BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family
protein [Candidatus Liberibacter asiaticus str. psy62]
         (963 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|86356622|ref|YP_468514.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280724|gb|ABC89787.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 965

 Score =  974 bits (2519), Expect = 0.0,   Method: Composition-based stats.
 Identities = 520/965 (53%), Positives = 694/965 (71%), Gaps = 2/965 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           ML  +           + +         + A EP+ IS  D  LDLT+ T IY NQGE F
Sbjct: 1   MLPKSPSGRVIAVIAALFLAVFALSAGVTQAAEPVKISRDDTALDLTATTEIYANQGEAF 60

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QV TAA  DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F P
Sbjct: 61  QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 120

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN 
Sbjct: 121 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 180

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDT+N+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VLGYI +DFGFL 
Sbjct: 181 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 240

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + +  +A+LF ++
Sbjct: 241 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 300

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            Y P + A IAR++ A         IIY G   Y+RA+LL+PAW L  +W  G W+ +T 
Sbjct: 301 IYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGAWLTVTG 360

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F QG+FSD ERQSLA+ GSGD+VWD
Sbjct: 361 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 420

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +RRGRL 
Sbjct: 421 WDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 480

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           +EFR+RA D  FHW++IR RP+  SNG+I+R +G   D+TEQK S+E +L +A  DNLTG
Sbjct: 481 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLQDALHDNLTG 540

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNRQ FLDRL  +L L+   D LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ 
Sbjct: 541 LPNRQVFLDRLQAVLALAPGGDTLRPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLR 600

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            L+K  D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TASIG 
Sbjct: 601 RLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADAVSKAIMVPINFSNREIILTASIGL 660

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
           ASW   + ++S +L +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  
Sbjct: 661 ASWVDRQESASGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERR 720

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL +VY PI RL D E+ G EAL++W+HPK GNI  SEF+ IAE   +I  + +F LE+ 
Sbjct: 721 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAESSDLIGPLGMFALEQA 780

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D++SW++Q    PIF+ IN++S  LL+NEL + ++++++KT  +PSR+KL  +ES+VM
Sbjct: 781 TNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCTPSRLKLELTESMVM 840

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898
            NPE++RL+L +L++ GI L LDDFGT  S L+YL   PFDT+K + +L+  S++K+  +
Sbjct: 841 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDSSDKKATV 900

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           LRS+I MA+ +E  ++A+ I    D  EL +MGC Y Q      P+  +S+L+LL++RFP
Sbjct: 901 LRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPMPSDSVLRLLRDRFP 960

Query: 959 LVKNT 963
           L K  
Sbjct: 961 LTKRA 965


>gi|222085144|ref|YP_002543674.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221722592|gb|ACM25748.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 970

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/942 (56%), Positives = 691/942 (73%), Gaps = 2/942 (0%)

Query: 24  WMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIR 83
           ++   + A EP+ IS  D  LDLT+ T IY NQGE FQV TAA  DGI RRIEV +SS  
Sbjct: 29  FLAGMAQAAEPVKISRDDTALDLTATTEIYTNQGEAFQVSTAAGADGIRRRIEVRSSSPN 88

Query: 84  HRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPN 143
           H+GDWAVFALAN S+ QLER+IV PH+RLV S  F PDLGS+RI+++TPSEGF+LDR P+
Sbjct: 89  HQGDWAVFALANVSEEQLERVIVAPHFRLVNSKMFWPDLGSQRIVAITPSEGFALDRQPS 148

Query: 144 SDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLA 203
            ++DVFRIT+NPGAVVTF+ E+S+PNLPQ+YLWEPN YKDTVN+FTLYRGI++G+A LLA
Sbjct: 149 DEADVFRITLNPGAVVTFVAELSSPNLPQLYLWEPNAYKDTVNAFTLYRGIVLGIAGLLA 208

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
           +FLTI ++V  +SML  T A+AW VLGYI +DFGFL KL+++ S +  IWRAC+E+AL+S
Sbjct: 209 VFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLGKLISITSSDQRIWRACAEVALAS 268

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
           SL+IFLF YL+ NRWHA +GY+T + I  +A+LF ++ Y P + + IAR++LA       
Sbjct: 269 SLVIFLFTYLNLNRWHAHLGYVTLAWILGLALLFGVAIYDPSIASGIARLSLALTATAGL 328

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             IIY G   Y+RA+LL+PAW LI +W  G WM IT +LDNDIIQPAL GGLVLIV+LIG
Sbjct: 329 LLIIYLGFSRYDRAILLVPAWALILVWLFGGWMTITGKLDNDIIQPALGGGLVLIVLLIG 388

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           FTV+QH  A G F QG+FSD ERQSLA+ GSGD VWDWD+ RDRV TTPDI+T LGL+ G
Sbjct: 389 FTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDTVWDWDVARDRVVTTPDISTKLGLSPG 448

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +MHG  RNWLP +H +DRD FR  LD  + +RRGRL +EFR+RA D  FHW+ IR RP+ 
Sbjct: 449 TMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLNHEFRIRAEDGHFHWLSIRARPVL 508

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            SNG+I+R +G   D+TEQK S+E +L +A  DNLTG+PNRQ FLDRL  +L L+   + 
Sbjct: 509 GSNGEIIRCVGTIVDVTEQKNSIERLLHDALHDNLTGLPNRQVFLDRLQAVLTLAPEGNQ 568

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+  L+K  D LARLSG++FG+IL+S
Sbjct: 569 LRPTVMVIDIDRYKLVNDTLGVAAGDNILIALTRRLRRLMKPQDTLARLSGDQFGLILVS 628

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E +  K+ADFA A+ K+I +PIN   REI +TASIG  SW   +  +S +L +AELAMY 
Sbjct: 629 ERDPAKVADFADAISKAIMVPINFANREIILTASIGLTSWVDQQENASGLLSDAELAMYR 688

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GGN VE F+ +      DR+ ++ DL  AVE  EL LVY PI+RL D E+ G EAL
Sbjct: 689 AKRAGGNRVEPFQPAFRSFGTDRLQLETDLRRAVERKELSLVYQPIVRLEDAEVAGFEAL 748

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HPK GNI  SEF+ IAE   +I  + +F LE+   D+++W+ Q    P+F+ IN++
Sbjct: 749 MRWEHPKRGNIPPSEFIPIAEASDIIGPLGMFALEQATNDLMAWQRQTGDLPLFVSINLS 808

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S  LL+NEL + ++AL++KT   P RIKL  +ES VM NPE++RL+LG+LR  GI L LD
Sbjct: 809 SVQLLNNELYDDIRALLAKTHCEPHRIKLELTESQVMENPEQARLVLGKLRDAGIGLALD 868

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           DFGT  S LSYL   PFDT+K + +++   ++K+  +LRS+I MA+ +   ++A+ I  E
Sbjct: 869 DFGTGYSSLSYLTRFPFDTIKLDKTMVCDESDKKAILLRSVISMARELNMRVVAEGIESE 928

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            D  EL +MGC Y Q      P+G +S+L+LLKERFPL K  
Sbjct: 929 EDALELAKMGCAYGQSFIFGPPMGTDSVLRLLKERFPLTKRA 970


>gi|190890692|ref|YP_001977234.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695971|gb|ACE90056.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|327192550|gb|EGE59501.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 970

 Score =  968 bits (2502), Expect = 0.0,   Method: Composition-based stats.
 Identities = 518/965 (53%), Positives = 691/965 (71%), Gaps = 2/965 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           ML  +           I +         + A EP+ IS  D  LDLT+ T IY NQGE F
Sbjct: 6   MLPKSPSGRVIAVIAAIFLAAFALSAGLARAAEPVKISRDDTALDLTATTEIYANQGEAF 65

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QV TAA  DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F P
Sbjct: 66  QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 125

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN 
Sbjct: 126 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 185

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDT+N+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VLGYI +DFGFL 
Sbjct: 186 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 245

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + +  +A+LF ++
Sbjct: 246 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 305

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            Y P + A IAR++ A         IIY G   Y+RA+LL+PAW L  +W  G W+ +T 
Sbjct: 306 IYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGAWLTVTG 365

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F QG+FSD ERQSLA+ GSGD+VWD
Sbjct: 366 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 425

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +RRGRL 
Sbjct: 426 WDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 485

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           +EFR+RA D  FHW++IR RP+  SNG+I+R +G   D+TEQK S+E +L +A  DNLTG
Sbjct: 486 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLQDALHDNLTG 545

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNRQ FLDRL  +L L+   + LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ 
Sbjct: 546 LPNRQVFLDRLQAVLALAPGGETLRPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLR 605

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            L+K  D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TASIG 
Sbjct: 606 RLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADAVSKAIMVPINFSNREIILTASIGL 665

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
           ASW   + ++S +L +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  
Sbjct: 666 ASWVDRQESASGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERR 725

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL +VY PI RL D E+ G EAL++W+HPK G I  SEF+ IAE   +I  + +F LE+ 
Sbjct: 726 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGTIPPSEFIPIAEASDLIGPLGMFALEQA 785

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D++SW++Q    PIF+ IN++S  LL+NEL + ++++++KT  +PSR+KL  +ES+VM
Sbjct: 786 TNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCAPSRLKLELTESMVM 845

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898
            NPE++RL+L +L++ GI L LDDFGT  S L+YL   PFDT+K + +L+   ++K+  +
Sbjct: 846 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDGSDKKATV 905

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           LRS+I MA+ +E  ++A+ I    D  EL +MGC Y Q      P+   S+L+LL++RFP
Sbjct: 906 LRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPIPSESVLRLLRDRFP 965

Query: 959 LVKNT 963
           L K  
Sbjct: 966 LTKRA 970


>gi|241203436|ref|YP_002974532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857326|gb|ACS54993.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 965

 Score =  959 bits (2480), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/965 (53%), Positives = 696/965 (72%), Gaps = 2/965 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           ML  +           + +    ++   + A EP+ IS  D  LDLT+ T IY NQGE F
Sbjct: 1   MLPKSPSGRVIAVIAALFLAAFAFVAGVAQAAEPVKISRDDTALDLTATTEIYANQGEAF 60

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QV TAA  DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F P
Sbjct: 61  QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 120

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN 
Sbjct: 121 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 180

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDT+N+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VLGYI +DFGFL 
Sbjct: 181 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 240

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + +  +A+LF ++
Sbjct: 241 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 300

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            Y P + A IAR++ A         IIY G   Y+RA+LL+PAW LI +W  G W+ +T 
Sbjct: 301 IYDPSIAAGIARLSFALTATMGLLLIIYLGFNRYDRAILLVPAWALILVWLFGAWLTVTG 360

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F QG+FSD ERQSLA+ GSGD+VWD
Sbjct: 361 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 420

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +RRGRL 
Sbjct: 421 WDVARDRVVTIPDVSIKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 480

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           +EFR+RA D  FHW++IR RP+  SNG+I+R +G   D+TEQK S+E +L +A  DNLTG
Sbjct: 481 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLHDALHDNLTG 540

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNRQ FLDRL ++L L+   D LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ 
Sbjct: 541 LPNRQVFLDRLQSVLALAPGGDTLRPTVMVIDIDRYKLVNDSLGVAAGDNILIALTRRLR 600

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LLK  D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TAS+G 
Sbjct: 601 RLLKPQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASVGL 660

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
           ASW   + +++ +L +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  
Sbjct: 661 ASWVDRQESATGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERK 720

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL +VY PI RL D E+ G EAL++W+HPK GNI  SEF+ IAE   +I  + +F LE+ 
Sbjct: 721 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQA 780

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D++SW+ Q    PIF+ IN++S  LL+NEL + ++++++KT   PSR+KL  +ES+VM
Sbjct: 781 TNDLMSWQHQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCQPSRLKLELTESMVM 840

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898
            NPE++RL+L +L++ GI L LDDFGT  S L+YL   PFDT+K + +L+  S++K+  +
Sbjct: 841 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKTLVRDSSDKKAIV 900

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           LRS+I MA+ ++  ++A+ I    D  EL +MGC+Y Q      P+   S+L+LL++RFP
Sbjct: 901 LRSVISMARELDMKVVAEGIESNEDAIELAKMGCNYGQSYLFGPPIPSESVLRLLRDRFP 960

Query: 959 LVKNT 963
           L K  
Sbjct: 961 LTKRA 965


>gi|116250832|ref|YP_766670.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255480|emb|CAK06556.1| putative transmembrane sensory box GGDEF/EAL domain protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 970

 Score =  959 bits (2478), Expect = 0.0,   Method: Composition-based stats.
 Identities = 517/965 (53%), Positives = 696/965 (72%), Gaps = 2/965 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           ML  +           + +    ++   + A EP+ IS  D  LDLT+ T IY NQGE F
Sbjct: 6   MLPKSPSGRVIAVIAALFLAAFAFVAGVAQAAEPVKISRDDTALDLTATTEIYTNQGEAF 65

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QV TAA  DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F P
Sbjct: 66  QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 125

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPG+V+TF+ E+STP LPQIYLWEPN 
Sbjct: 126 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGSVITFVAELSTPELPQIYLWEPNA 185

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDT+N+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VLGYI +DFGFL 
Sbjct: 186 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 245

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + +  +A+LF ++
Sbjct: 246 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 305

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            Y P + A IAR++ A         IIY G   Y+RA+LL+PAW LI +W  G W+ +T 
Sbjct: 306 IYDPSIAAGIARLSFALTATMGLLLIIYLGFNRYDRAILLVPAWALILVWLFGAWLTVTG 365

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G + QG+FSD ERQSLA+ GSGD+VWD
Sbjct: 366 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAYQQGLFSDLERQSLALTGSGDMVWD 425

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +RRGRL 
Sbjct: 426 WDVARDRVVTIPDVSIKLGLSQGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 485

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           +EFR+RA D  FHW++IR RP+  SNG+I+R +G   D+TEQK S+E +L +A  DNLTG
Sbjct: 486 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLHDALHDNLTG 545

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNRQ FLDRL ++L L+   D LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+ 
Sbjct: 546 LPNRQVFLDRLQSVLALAPGGDTLRPTVMVIDIDRYKLVNDSLGVAAGDNILIALTRRLR 605

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LLK  D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TAS+G 
Sbjct: 606 RLLKPQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASVGL 665

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
           ASW   + +++ +L +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  
Sbjct: 666 ASWVDRQESATGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERK 725

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL +VY PI RL D E+ G EAL++W+HPK GNI  SEF+ IAE   +I  + +F LE+ 
Sbjct: 726 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQA 785

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D++SW+ Q    PIF+ IN++S  LL+NEL + ++++++KT   PSR+KL  +ES+VM
Sbjct: 786 TNDLMSWQHQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCQPSRLKLELTESMVM 845

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898
            NPE++RL+L +L++ GI L LDDFGT  S L+YL   PFDT+K + +L+  S++K+  +
Sbjct: 846 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDSSDKKATV 905

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           LRS+I MA+ ++  ++A+ I    D  EL +MGC+Y Q      P+   S+L+LL++RFP
Sbjct: 906 LRSVIAMARELDMKVVAEGIESNEDAIELAKMGCNYGQSYLFGPPIPSESVLRLLRDRFP 965

Query: 959 LVKNT 963
           L K  
Sbjct: 966 LTKRA 970


>gi|209548238|ref|YP_002280155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533994|gb|ACI53929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 965

 Score =  952 bits (2462), Expect = 0.0,   Method: Composition-based stats.
 Identities = 518/965 (53%), Positives = 691/965 (71%), Gaps = 2/965 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           ML  +           + +     +   + A EP+ IS  D  LDLT+ T IYVNQGE F
Sbjct: 1   MLPKSPSGRVIAVIAALFLAAFALVAGAAQAAEPVKISRDDTALDLTATTEIYVNQGEAF 60

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QV TAA  DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F P
Sbjct: 61  QVSTAAGADGIRRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWP 120

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIYLWEPN 
Sbjct: 121 DLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIYLWEPNA 180

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDT+N+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VLGYI +DFGFL 
Sbjct: 181 YKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICVDFGFLG 240

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + +  +A+LF ++
Sbjct: 241 KLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLALLFGVA 300

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            Y P + A IAR++ A         I+Y G   Y+RA+LL+PAW L  +W  G WM +T 
Sbjct: 301 IYDPSIAAGIARLSFALTAATGLLLIVYLGFNRYDRAILLVPAWALTLVWLFGAWMTVTG 360

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F QG+FSD ERQSLA+ GSGD+VWD
Sbjct: 361 RLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWD 420

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +RRGRL 
Sbjct: 421 WDVARDRVVTIPDVSAKLGLSPGTMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLN 480

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           +EFR+RA D  FHW++IR RP+  SNG+I+R +G   D+TEQK S+E +L +A  DNLTG
Sbjct: 481 HEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSIERLLHDALHDNLTG 540

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNRQ FLDRL  +L L+   D L+PTVMVIDID+YK +ND LG+A GD++L++LTRR+ 
Sbjct: 541 LPNRQVFLDRLQAVLALAPGGDTLKPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLR 600

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LLK  D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TASIG 
Sbjct: 601 RLLKPQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASIGL 660

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
            SW   + +++ +L +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  
Sbjct: 661 TSWVDRQESATGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERK 720

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL +VY PI RL D E+ G EAL++W+HPK GNI  SEF+ IAE   +I  + +F LE+ 
Sbjct: 721 ELSMVYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAESSDLIGPLGMFALEQA 780

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D++SW++Q    PIF+ IN++S  LL+NEL + ++++++KT   PSR+KL  +ES+VM
Sbjct: 781 TNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCQPSRLKLELTESMVM 840

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898
            NPE++RL+L +L++ GI L LDDFGT  S L+YL   PFD +K + +L+   ++K+  +
Sbjct: 841 ENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDMIKLDKALVRDGSDKKATV 900

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           LRS+I MA+ +E  ++A+ I    D  EL +MGC Y Q      P+   S+L+LL+ERFP
Sbjct: 901 LRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPIASESVLRLLRERFP 960

Query: 959 LVKNT 963
           L K  
Sbjct: 961 LTKRA 965


>gi|15888127|ref|NP_353808.1| hypothetical protein Atu0784 [Agrobacterium tumefaciens str. C58]
 gi|15155761|gb|AAK86593.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 971

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/963 (52%), Positives = 681/963 (70%), Gaps = 2/963 (0%)

Query: 3   LSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQV 62
              S R       +   L  +   S S+A EP+ IS  D  LDLT+ T IY NQGE FQV
Sbjct: 8   PCLSKRLAAIALAVPFFLLFVLFASHSYAFEPVKISRDDTALDLTATTDIYANQGEAFQV 67

Query: 63  FTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122
            TA   DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F PDL
Sbjct: 68  STAPGPDGIRRRIEVRASSEDHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDL 127

Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYK 182
           GS+RII++TPSEGF+LDR P+ D+DVFRIT+NPG+V+TF+ E+STP LPQIYLWEP  YK
Sbjct: 128 GSQRIIAITPSEGFALDRQPSPDADVFRITLNPGSVITFVAELSTPQLPQIYLWEPEAYK 187

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           DT+N+FTLYRGI++G+A LLA+ LTI ++V  +S+L  + A+AW VL YI +DFGFL KL
Sbjct: 188 DTINAFTLYRGIVLGIAGLLAVLLTILFVVKGTSVLPASAALAWAVLAYICVDFGFLEKL 247

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
           + + S +  IWRA +E+AL+SS ++FLF YL+ NRWHA +GY TF+ +  +A+LF ++ Y
Sbjct: 248 ITVTSSDQRIWRAGAEVALASSFVVFLFTYLNLNRWHAHLGYATFAWVVGLALLFGVAIY 307

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
            P V + IAR++ A         IIY G   Y+RA+LL+P+W LI +W  G W+ +T +L
Sbjct: 308 DPSVASGIARVSFALTATAGIALIIYLGFNRYDRAILLVPSWALILVWLFGSWLTVTGQL 367

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
           DNDI+QPAL GGLVLIV+LIGFTVIQH  A   + QG+FSD ERQSLA+ GSGD VWDWD
Sbjct: 368 DNDIVQPALGGGLVLIVLLIGFTVIQHAFAGSAYQQGLFSDLERQSLALTGSGDTVWDWD 427

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           + RDR+ TTPDI+  LGL  G+MHG  RNWLP +H +DRD F+  LD  + +R+GRL +E
Sbjct: 428 VTRDRIVTTPDISNRLGLEPGTMHGAARNWLPRLHPDDRDRFKATLDVLLDHRKGRLNHE 487

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           FR+RA D  FHW+ IR RP+  SNG+I+R +G   DITEQK S+E +L +A  DNLTG+P
Sbjct: 488 FRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTITDITEQKNSVERLLQDAMNDNLTGLP 547

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ FLDRL +IL+LS   + +RPTVM IDID+YK +ND LGIA GD++L++LTRR+  L
Sbjct: 548 NRQVFLDRLQSILNLSPDSEGVRPTVMAIDIDRYKLVNDTLGIAAGDNILIALTRRLRRL 607

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           LK  D LARL G+ FG+IL SE +  ++ADFA A+ K+I +PIN   REI +TASIG  S
Sbjct: 608 LKPQDTLARLGGDEFGLILTSERDPQRVADFADAVNKAIMVPINFANREIILTASIGLVS 667

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSEL 720
           W   + +++ +L +AELAMY AK  GGN VE FR +     +DR+ ++ DL  A+E  EL
Sbjct: 668 WIDQQESAAGLLSDAELAMYRAKRAGGNRVEPFRPAFRTSGTDRLQMESDLRRAIERKEL 727

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI++L D  + G EAL++W+HPK GNI  SEF+ IAE   +I+ + +F LER A 
Sbjct: 728 SLAYQPIVKLDDGALAGFEALMRWEHPKRGNIPPSEFIPIAEASGLIEPLGMFALERAAT 787

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           D++ W+   +  PIFI +NI+S  LL+NEL   ++ ++++T  +P ++KL  +ESVVM N
Sbjct: 788 DLMDWQHAIDKMPIFISVNISSAQLLNNELYNDVRGMLTRTRCNPQQLKLELTESVVMEN 847

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900
           PE++RL+L +L++ G+SL +DDFGT  S L+YL   PFDT+K + +L+  +++KR  +LR
Sbjct: 848 PEQARLVLSKLKETGLSLAMDDFGTGYSSLAYLTRFPFDTIKLDKALVANTSDKRNVLLR 907

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           S+I MA+ ++  ++A+ I    D  EL RM C + Q     +P+  ++ LKLL+ERF   
Sbjct: 908 SVIAMARALDMQVVAEGIETPEDAAELARMNCHFGQSFMFGTPVSGDAALKLLRERFQPT 967

Query: 961 KNT 963
           K  
Sbjct: 968 KRA 970


>gi|325292168|ref|YP_004278032.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
 gi|325060021|gb|ADY63712.1| putative sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
          Length = 971

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/936 (53%), Positives = 674/936 (72%), Gaps = 2/936 (0%)

Query: 30  FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89
           +A EP+ IS  D  LDLT+ T IY NQGE FQV TA   DGI RRIEV ASS  H+GDWA
Sbjct: 35  YAFEPVKISRDDTALDLTATTDIYANQGEAFQVSTAPGPDGIRRRIEVRASSTDHQGDWA 94

Query: 90  VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149
           VFALAN S+ QLER+IV PH+RLV S  F PDLGS+RII++TPSEGF+LDR P+ D+DVF
Sbjct: 95  VFALANVSEEQLERVIVAPHFRLVNSKLFWPDLGSQRIIAITPSEGFALDRQPSPDADVF 154

Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209
           RIT+NPG+V+TF+ E+STP LPQIYLWEP  YKDT+N+FTLYRGI++G+A LLA+ LTI 
Sbjct: 155 RITLNPGSVITFVAELSTPQLPQIYLWEPEAYKDTINAFTLYRGIVLGIAGLLAVLLTIL 214

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
           ++V  +S+L  + A+AW VL YI +DFGFL KL+ + S +  IWRA +E+AL+SS ++FL
Sbjct: 215 FVVKGTSVLPASAALAWAVLAYICVDFGFLEKLITVTSSDQRIWRAGAEVALASSFVVFL 274

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           F YL+ NRWHA +GY TF+ +  +A+LF ++ + P V + IAR++ A         IIY 
Sbjct: 275 FTYLNLNRWHAHLGYATFAWVVGLALLFGVAIFDPSVASGIARVSFALTATAGIALIIYL 334

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
           G   Y+RA+LL+P+W LI +W  G W+ +T +LDNDI+QPAL GGLVLIV+LIGFTVIQH
Sbjct: 335 GFNRYDRAILLVPSWALILVWLFGSWLTVTGQLDNDIVQPALGGGLVLIVLLIGFTVIQH 394

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             A   + QG+FSD ERQSLA+ GSGD VWDWD+ RDR+ TTPDI+  LGL  G+MHG  
Sbjct: 395 AFAGSAYQQGLFSDLERQSLALTGSGDTVWDWDVTRDRIVTTPDISNRLGLEPGTMHGAA 454

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           RNWLP +H +DRD F+  LD  + +R+GRL +EFR+RA D  FHW+ IR RP+  SNG+I
Sbjct: 455 RNWLPRLHPDDRDRFKATLDVLLDHRKGRLNHEFRIRAEDGHFHWLQIRARPVLGSNGEI 514

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +R +G   DITEQK S+E +L +A  DNLTG+PNRQ FLDRL +IL+LS   D +RPTVM
Sbjct: 515 IRCVGTITDITEQKNSVERLLQDAMNDNLTGLPNRQVFLDRLQSILNLSPESDGVRPTVM 574

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            IDID+YK +ND LGIA GD++L++LTRR+  LLK  D LARL G+ FG+IL SE +  +
Sbjct: 575 AIDIDRYKLVNDTLGIAAGDNILIALTRRLRRLLKPQDTLARLGGDEFGLILTSERDPQR 634

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +ADFA A+ K+I +PIN   REI +TASIG  SW   + +++ +L +AELAMY AK  GG
Sbjct: 635 VADFADAVNKAIMVPINFANREIILTASIGLVSWIDQQESAAGLLSDAELAMYRAKRAGG 694

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N VE FR +     +DR+ ++ DL  A+E  EL L Y PI++L D  + G EAL++W+HP
Sbjct: 695 NRVEPFRPAFRTSGTDRLQMESDLRRAIERKELSLAYQPIVKLDDGALAGFEALMRWEHP 754

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K GNI  SEF+ IAE   +I+ + +F LER A D++ W+      PIFI +NI+S  LL+
Sbjct: 755 KRGNIPPSEFIPIAEASGLIEPLGMFALERAATDLMDWQHSIEKMPIFISVNISSAQLLN 814

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           NEL   ++ ++++T  +P ++KL  +ESVVM NPE++RL+L +L++ GISL +DDFGT  
Sbjct: 815 NELYNDVRGMLTRTRCNPQQLKLELTESVVMENPEQARLVLSKLKETGISLAMDDFGTGY 874

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           S L+YL   PFDT+K + +L+  +++KR  +LRS+I MA+ ++  ++A+ I    D  EL
Sbjct: 875 SSLAYLTRFPFDTIKLDKALVANTSDKRNVLLRSVIAMARALDMQVVAEGIETPEDAAEL 934

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +RM C + Q     +P+  ++ LKLL+ERF   K  
Sbjct: 935 SRMNCHFGQSFLFGTPVSGDAALKLLRERFQPTKRA 970


>gi|153007941|ref|YP_001369156.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151559829|gb|ABS13327.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ochrobactrum anthropi ATCC 49188]
          Length = 965

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/946 (47%), Positives = 658/946 (69%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           FL L++FL   V  + AIEPI IS  D  LDL+    +  N+GE  QV TA   DGI RR
Sbjct: 15  FLALMVFLTVSVVQASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTAPGPDGIVRR 74

Query: 75  IEVSA-SSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV A  + +  GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQADQNSKASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+VVTF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVVTFVAELSSHNLPQLYLWEPEAYKDAVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMEITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + +  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWVLGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V+     I Y  +KGY+RAV+LIPAW+L  IW +G WM ++ RLDNDI+QPAL G
Sbjct: 315 SLALTVVSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLLGAWMTVSGRLDNDIVQPALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGALQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTANSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL+ 
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSN 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV +IDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 VMNMARGESNLHPTVFIIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE++  +IA FA A+R+++  PI   +REI +TAS+G  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASESDPGRIASFAEALRQAVRAPIAYAKREIVLTASVGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAMY AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMYQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLD 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  I G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTIAGFEALMRWEHPRRGAISPSEFIPIAENSGLIIQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSTHVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKATLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESESDALQLRQMGCEYVQSFMFGQPTSRDEATRMIREQL 960


>gi|319784685|ref|YP_004144161.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170573|gb|ADV14111.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 962

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/957 (47%), Positives = 663/957 (69%), Gaps = 2/957 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           LR+    A ++  L  LW  S +FA+EPI I+  D  LDL+    IY NQGE+FQV TA 
Sbjct: 5   LRNGPLFAIVLATLLTLWAASSAFAVEPIKIARDDVALDLSGAVEIYRNQGENFQVSTAP 64

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RRIEV A+  R  GDWAVFALANT+D QL+RLIV PH+RLV S  F PDLGS R
Sbjct: 65  GPDGIVRRIEVEANDARSTGDWAVFALANTTDQQLDRLIVAPHFRLVNSGIFWPDLGSTR 124

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPSEGF+LDR  + D+DVFR+T+NPG V+TFI E+++P LPQ+YLW+P  YKD+VN
Sbjct: 125 IAAITPSEGFALDRQTSPDADVFRVTLNPGTVITFIAELASPKLPQVYLWDPESYKDSVN 184

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           S+TL+RGI+IG+A LLA+FLTI ++V  +SM   T A+AW VL YI +DFGFL+K++ + 
Sbjct: 185 SYTLFRGIVIGIAGLLALFLTILFVVKGTSMFPATAALAWAVLAYICVDFGFLNKVIEIS 244

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
            G   +WRA +E+AL+ + ++FLF YL+ NRWH    Y     I  + ++  ++   P V
Sbjct: 245 PGNEQMWRAGTEVALAGTFVVFLFAYLNLNRWHGHFSYGALVWILGLVLIAGVAIVDPAV 304

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            A IAR++ A+  L     II+ G++GY+RA++L+P+W+++ +W  G WMAIT  LDNDI
Sbjct: 305 AAGIARLSFAATALTGLGLIIFLGIRGYDRAIMLVPSWVMVLLWLCGSWMAITGMLDNDI 364

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
            QPAL GGL+LI++LIGFTV+QH  A G   QG+FSD ERQ+LAV GSGD VWDWD++RD
Sbjct: 365 AQPALGGGLILIILLIGFTVMQHAFAGGALHQGLFSDLERQALAVAGSGDTVWDWDVLRD 424

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           RV T PD++  LGLA  S+ G  RNWLP +H +DRD FRT LD  + +RRGR+   FR+R
Sbjct: 425 RVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDVVLEHRRGRVSQNFRLR 484

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            AD  +HW  +R RP+  S+G+++R +G   D+TEQKKS E +L +A  DNLTG+PNR+ 
Sbjct: 485 GADGHYHWFSLRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLLHDAVHDNLTGLPNREL 544

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            ++RL  I+ ++ T++ +RPTV VIDID++K++ND LGI+ GD +L+++ RR+  LLK  
Sbjct: 545 LMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDTILLTIARRLHRLLKPK 604

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D L+R +G++F ++L+SE +  +IA  A A++ +I  PI   +REI +TASIG  +W S 
Sbjct: 605 DSLSRFAGDQFALMLLSEQDPARIAAVADAIKHAINNPITFAKREIVLTASIGLITWNSP 664

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724
           ++++ +M+K+AELAM+ AK  GG+ +E FR +     +DR+  + DL  A+E  E  L Y
Sbjct: 665 QMSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIERREFTLAY 724

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  + G EAL++WDHP+ G I  ++F+ +AE   +I  + LF +++ A D+ S
Sbjct: 725 QPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQQAAEDLAS 784

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W+ Q    P+ + +N++S+ L+  +L   ++++I++    P   +L  +ES+VM NPE++
Sbjct: 785 WQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCFRLELTESLVMDNPEQT 844

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIP 904
             +L +L+++GI L+LDDFGT  S L+YL   PFDT+K + S +  +T KR  +L+S++ 
Sbjct: 845 AHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFVDDNTPKRAVLLKSMVN 904

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           MA  +  +++A+ I  E D  EL +MGC+Y+Q     +P+  + +LK LKE++PL +
Sbjct: 905 MAHELGLSVVAEGISDESDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQYPLTQ 961


>gi|110633114|ref|YP_673322.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium sp. BNC1]
 gi|110284098|gb|ABG62157.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chelativorans sp. BNC1]
          Length = 949

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/949 (47%), Positives = 673/949 (70%), Gaps = 2/949 (0%)

Query: 16  LILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRI 75
           ++L L L+++ +P+FA+EPI IS  D  LDL+    I+ +QGE+FQV TA   DGI RRI
Sbjct: 1   MLLWLVLVFVAAPAFAVEPIKISREDVALDLSQAVEIHRDQGENFQVSTAPGADGIVRRI 60

Query: 76  EVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEG 135
           EV A   R  GDWAVFALANT+D QL+RLIV PH+RLVGS    PDLGS+RI ++TPSEG
Sbjct: 61  EVEAQDSRSTGDWAVFALANTTDEQLDRLIVAPHFRLVGSGIIWPDLGSQRIAAITPSEG 120

Query: 136 FSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGII 195
           F+LDR P+SD+D F +T+NPG VVTF+ E+S+PNLPQIYLW+P  YKDTVNS+TL+RGI+
Sbjct: 121 FALDRQPSSDADEFLVTLNPGTVVTFVAELSSPNLPQIYLWDPAAYKDTVNSYTLFRGIV 180

Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRA 255
           IG+A LLA+FLT+ ++V  +SM   T A+AW +L YISIDFGFLS+++++  G   +WRA
Sbjct: 181 IGIAGLLALFLTVLFVVKGTSMFPATAALAWAILAYISIDFGFLSRIIDISPGNEQLWRA 240

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
            +E+AL+++ ++FLF YL+  RWH    Y T + I  + I+  ++ + P + A IAR +L
Sbjct: 241 GTEVALAATFVVFLFAYLNLARWHNHFSYGTLAWILVLVIIAGVAVFDPPIAAGIARFSL 300

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
           A+  +     I+Y GM+GY+RA++L+P+W+++ +W  G WMA+T  L+NDI+QPA+ GGL
Sbjct: 301 AATAVIGLGLIVYMGMQGYDRAIMLVPSWLMVLVWLTGAWMAVTGTLNNDILQPAISGGL 360

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +LIV+LIGFTV+QH L+     QG+FSD ERQ+LA+ GSGD+VWDWD++RDRVTT PDI+
Sbjct: 361 ILIVLLIGFTVMQHALSGSAIFQGLFSDMERQALAISGSGDVVWDWDVLRDRVTTKPDIS 420

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             LGLA+ ++HGP R+WLP +H +DRD FRT LD  + +RRGR+   FR+R AD  +HW+
Sbjct: 421 KQLGLAANTLHGPARSWLPLLHSDDRDTFRTTLDMVLEHRRGRIAQNFRLRGADGHYHWL 480

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +R RP+  S+G+++R +G   D+TEQKK+ E +L +A  DNLTG+PNR+ FL+RL   +
Sbjct: 481 SLRARPVVGSDGEVIRCVGTMVDVTEQKKAEERLLHDAVHDNLTGLPNRELFLNRLDATI 540

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            ++  +  +RPTV+VIDID++K +ND LGI+ GD +L+++ RR+  LLK  D L+R++G+
Sbjct: 541 AMAGKERKIRPTVLVIDIDRFKHVNDELGISAGDTILLTIARRLHRLLKPGDALSRVAGD 600

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           +F ++L+SE    +IA  A A+R +I  PI   +REI +TASIG  SWT+ + ++ EM+K
Sbjct: 601 QFAVMLLSEQEPAQIAAIADAVRLAIRSPITFAKREIILTASIGLVSWTAVQASAEEMIK 660

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +AELAMY AK  GG+ +E FR +      DR+ ++ DL  AV+  EL + Y PI+RL D 
Sbjct: 661 DAELAMYQAKRFGGDRIEPFRPAFRSIGTDRLQMESDLRRAVDRKELRVAYQPIVRLEDG 720

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + G EAL++WDHP+ G I  ++F+ IAE   +I  + LF +++ A D+ SW+ Q    P
Sbjct: 721 TVAGFEALLRWDHPRRGTIPPADFIPIAESSGLIVQLGLFAMQQAAEDLYSWQKQLGDVP 780

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++S+  +  +L   +++++++    P   +L  +ESVVM NPE+S  +L +L++
Sbjct: 781 LFMSVNLSSRQFIRRDLVGDVRSIVARANIKPRCFRLELTESVVMDNPEQSSHVLAKLKQ 840

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI 913
           +GI L+LDDFGT  S LSYL   PFDT+K + + +   + K   +L+S+I MA ++  ++
Sbjct: 841 LGIGLSLDDFGTGYSSLSYLTRFPFDTIKIDKTFLNNPSSKGNVLLKSMITMAHDLGLSV 900

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +A+ +  E D+ +L +MGC+Y Q  ++ +P    S LKLL E+ P+  +
Sbjct: 901 VAEGVTDEHDLSQLRQMGCEYGQSFYLGAPSDAESCLKLLTEQNPVTAS 949


>gi|150395757|ref|YP_001326224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Sinorhizobium medicae WSM419]
 gi|150027272|gb|ABR59389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium medicae WSM419]
          Length = 970

 Score =  938 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/970 (52%), Positives = 690/970 (71%), Gaps = 9/970 (0%)

Query: 3   LSNSLRSHFEKAFLILVLFLLWMV-------SPSFAIEPINISSSDRVLDLTSITRIYVN 55
           +    + H   A  +  + +  +V         + A+EP+ IS  D  LDLT+ T IY  
Sbjct: 1   MPLPRKPHAWPATWLTAILVALVVFALGFGGGVAHALEPVKISREDTALDLTATTEIYSG 60

Query: 56  QGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGS 115
           +G+ FQV TA   DGI RRIEV +S+  H+GDWAVFALAN S+ QLER+IV PH+RLV S
Sbjct: 61  RGDAFQVSTAPGTDGIVRRIEVRSSTESHQGDWAVFALANVSEEQLERVIVAPHFRLVNS 120

Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175
             F PDLGS+RI+S+TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E++TP LPQIYL
Sbjct: 121 KLFWPDLGSQRILSITPSEGFALDRQPSEEADVFRITLNPGAVITFVAELTTPELPQIYL 180

Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISID 235
           W+P+ YKDTVN+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VL YI +D
Sbjct: 181 WQPDAYKDTVNAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLAYICVD 240

Query: 236 FGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAI 295
           FGFLSKL+ + + +  IWRA +E+ L++ L++FLF YL+ NRWH  +GY T + I  + +
Sbjct: 241 FGFLSKLITVTADDERIWRAGTEVFLAAGLVVFLFTYLNLNRWHQHLGYATLAWILGLGL 300

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           LF ++ Y P + + IAR++ A         I Y G   Y+RA+LL+PAW+LI +W  G W
Sbjct: 301 LFGVAVYDPAIASGIARLSFALTATVGILLIAYLGFNRYDRAILLVPAWLLILVWLFGAW 360

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +A+T +L NDI+QPAL GGLVLIV+LIGFTV+QH  A G + QG+FSD ERQ+LA+ GSG
Sbjct: 361 LAVTGQLANDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAYQQGLFSDLERQALALTGSG 420

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D VWDWD+ RDRV T PDI+  LGL+ G+M+GP+RNWLP +H +DRD FR  LD  + +R
Sbjct: 421 DTVWDWDVARDRVVTIPDISHQLGLSLGTMNGPVRNWLPRLHPDDRDRFRATLDVLLEHR 480

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           RGRL +EFRVRA D  +HW+ IR RP+  +NG+I+R +G   DITEQ+ S+E +L NA  
Sbjct: 481 RGRLNHEFRVRAEDGHYHWLSIRARPVLGANGEIIRCVGTIIDITEQRNSVERLLHNALL 540

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           DNLTG+PNRQ FLDRL  IL +      +RPTV+ IDID+YK++ND+LGIA GD++L++L
Sbjct: 541 DNLTGLPNRQVFLDRLQAILLMGDGSSPIRPTVLAIDIDRYKQVNDMLGIAAGDNILIAL 600

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           TRR+  LL+  D LARL G++FG+IL+SE +  KIADFA A+ K+I +P+N   REI +T
Sbjct: 601 TRRLRRLLRPQDTLARLGGDQFGLILMSERDPAKIADFADAISKAIMVPLNYGNREINLT 660

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
           ASIG  +W   + +++ +L +AELAM+ AK  GGN VE FR +     SDR+ ++ DL  
Sbjct: 661 ASIGLVAWLDQEQSAAGLLDDAELAMFRAKKAGGNRVEPFRPAFRTSGSDRLQLETDLKR 720

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E  EL LVY PI+RL D EI G EAL++W+HPK GNIS +EF+ IAE   +I  + LF
Sbjct: 721 AMERKELSLVYQPIVRLSDAEIAGFEALMRWEHPKRGNISPTEFIPIAENSELISHLGLF 780

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
             ++   D+  W+ Q    PIF+ IN++S  LL+NEL + M+A++SK+   PS+IK+  +
Sbjct: 781 AFDKATSDLAEWQTQTGDLPIFVSINLSSAQLLNNELYDDMRAILSKSRCDPSQIKMELT 840

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES+VM NPE++RL+L +LR+ G+ L LDDFGT  S LSYL   PFDT+K + +L+   ++
Sbjct: 841 ESLVMENPEQARLVLEKLREAGLRLALDDFGTGHSSLSYLTRFPFDTIKIDKALVRDPSD 900

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           KR  ILRS+I MA+ ++  ++A+ I  E D  +L +MGCDY Q      P+G  SIL+LL
Sbjct: 901 KRAVILRSVITMARELDMRVVAEGIESEEDAIQLAQMGCDYGQSFLFGPPVGSESILRLL 960

Query: 954 KERFPLVKNT 963
           KERFPL+K  
Sbjct: 961 KERFPLMKRA 970


>gi|256060615|ref|ZP_05450781.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261324611|ref|ZP_05963808.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
 gi|261300591|gb|EEY04088.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
          Length = 964

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KLV +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLVQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 IKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|163760346|ref|ZP_02167428.1| hypothetical protein HPDFL43_03546 [Hoeflea phototrophica DFL-43]
 gi|162282297|gb|EDQ32586.1| hypothetical protein HPDFL43_03546 [Hoeflea phototrophica DFL-43]
          Length = 976

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/942 (49%), Positives = 665/942 (70%), Gaps = 2/942 (0%)

Query: 24  WMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIR 83
           +    + AIEP+ I   D  LDLT+ T IY  +GE FQV TAA  DGI RRIEV A+S +
Sbjct: 35  FSAPAAQAIEPVKIGRDDTALDLTATTEIYNQRGEAFQVSTAAGADGIVRRIEVRANSAQ 94

Query: 84  HRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPN 143
           H GDWAVFALAN +D Q++RLIV PH+RLV S    PDLGS RI+ +TPSEGF+LDR+P+
Sbjct: 95  HSGDWAVFALANVTDEQIDRLIVAPHFRLVASGLLWPDLGSARILGITPSEGFALDRVPS 154

Query: 144 SDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLA 203
           S+ DVFRIT+NPG V+TF+ E++ P LPQIYLWEP  YKDTVN++TLYRGI++G+A LLA
Sbjct: 155 SEDDVFRITLNPGTVITFVAELAAPELPQIYLWEPEAYKDTVNAYTLYRGIVLGIAGLLA 214

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
           +FLTI ++V  +SML  T A+AW VL Y+S+DFGFLSKL+ +  G+  IWRA +E+ L++
Sbjct: 215 VFLTILFVVKGTSMLPATAALAWAVLAYVSVDFGFLSKLILITPGDERIWRAGTEVLLAT 274

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
            L++FLF YL+ NRWH  + Y+T + I  +  LF ++ Y P V + IARI+ A+  +   
Sbjct: 275 GLVVFLFTYLNLNRWHTNLSYVTVAWILGLGALFAVAIYDPPVASGIARISFAATAIAGV 334

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             I Y G   Y+RAV+LIP W LI  W  G W+ +T +L NDI+QPAL GGLVLIV+L+G
Sbjct: 335 ALIAYLGFNRYDRAVMLIPTWALILCWLFGAWVTVTGQLANDIVQPALGGGLVLIVLLMG 394

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           FTV+QH  A G + QG+FSD ERQ++A+ GSGD VWDWD+ RDRV T+PD++  LGL+ G
Sbjct: 395 FTVMQHAFAGGAYHQGLFSDMERQAMALAGSGDTVWDWDVTRDRVVTSPDLSPQLGLSPG 454

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ GP RNWLP +H +DRD FRT LD  + +R+GRL ++FR+RA D  +HWM +R RP+ 
Sbjct: 455 ALAGPARNWLPRVHADDRDRFRTTLDVLLEHRKGRLNHQFRMRAEDGHYHWMALRARPVI 514

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            SNG+++R +G   D+TEQK S + +L +A  DNLTG+PNRQ F+DRL T++ ++A    
Sbjct: 515 GSNGEVIRCVGTIIDVTEQKTSEDRLLHDAVHDNLTGLPNRQLFVDRLQTMISIAAQSPE 574

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +RP+V +IDID++K++ND LG++VGD +L++LTRR+  LLK  D LAR+SG++FG++L+S
Sbjct: 575 VRPSVFMIDIDRFKQVNDKLGMSVGDTILLALTRRLKRLLKPLDTLARISGDQFGLVLVS 634

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E +++K+A  A A+ K+I+ PI+   ++I +TASIG  +W  S     +++K+AELAMY 
Sbjct: 635 EQDAVKVAALAEAISKAISAPIDFAGQDIRLTASIGLVTWVESDAQPEDLIKDAELAMYQ 694

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GGN +E FR +      DR  ++ DL  A+E  EL LVY PI+ L D EI G EAL
Sbjct: 695 AKRFGGNRIEPFRPAFRTVGSDRQRLESDLRRALERKELTLVYQPIVELKDAEIAGFEAL 754

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+ PK G +  SEF+ +AE   +I  + ++ L+R A D+  W++     P+F+ +N++
Sbjct: 755 LRWEDPKRGTVPPSEFIPVAETSDLILELGMYALKRAADDLAIWQETIGEVPVFMSVNLS 814

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S  LL ++LC  +   IS +   PS+ +L  +ES+VM NP+++ + L RL + GI LTLD
Sbjct: 815 SAQLLKSDLCNDVIKAISASRCEPSQFRLELTESLVMHNPQQALMTLARLSEAGIGLTLD 874

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           DFGT  S L+YL   PF T+K + SL+   TEK   ++RSI+ +AK+++ +++A+ +  E
Sbjct: 875 DFGTGHSSLAYLTRFPFQTIKIDKSLVIDQTEKGGILIRSIVNLAKHLDMSVVAEGVASE 934

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            D  +L+ MGCDY Q      P+G +S+ KLLKERFP+ K++
Sbjct: 935 DDAIQLSEMGCDYGQSFLFGPPIGADSVQKLLKERFPVAKSS 976


>gi|15964671|ref|NP_385024.1| putative transmembrane signal peptide protein [Sinorhizobium
           meliloti 1021]
 gi|307304249|ref|ZP_07584001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti
           BL225C]
 gi|307320554|ref|ZP_07599969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti
           AK83]
 gi|15073849|emb|CAC45490.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306893830|gb|EFN24601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti
           AK83]
 gi|306902717|gb|EFN33310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Sinorhizobium meliloti
           BL225C]
          Length = 970

 Score =  932 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/957 (52%), Positives = 687/957 (71%), Gaps = 2/957 (0%)

Query: 9   SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68
                   ++V  L      + A+EP+ IS  D  LDLT+ T IY  +G+ FQV TA   
Sbjct: 14  RLAAFLVALVVFALGLGGGVAHALEPVKISREDTALDLTATTEIYSGRGDAFQVSTAPGT 73

Query: 69  DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128
           DGI RRIEV +S+  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F PDLGS+RI+
Sbjct: 74  DGIVRRIEVRSSTENHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDLGSQRIL 133

Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188
           S+TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E++TP LPQIYLW+P+ YKDTVN+F
Sbjct: 134 SITPSEGFALDRQPSEEADVFRITLNPGAVITFVAELTTPELPQIYLWQPDAYKDTVNAF 193

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
           TLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VL YI +DFGFLSKL+ + + 
Sbjct: 194 TLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLAYICVDFGFLSKLITVTAD 253

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
           +  IWRA +E+ L++ L+IFLF YL+ NRWH  +GY T + I  + +LF ++ Y P + +
Sbjct: 254 DERIWRAGTEVFLAAGLVIFLFTYLNLNRWHQHLGYATLAWILGLGLLFGVAVYDPAIAS 313

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
            IAR++ A         I Y G   Y+RA+LL+PAW+LI +W  G W+A+T +L NDI+Q
Sbjct: 314 GIARLSFALTATVGIVLIAYLGFNRYDRAILLVPAWLLILVWLFGAWLAVTGQLANDIVQ 373

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
           PAL GGLVLIV+LIGFTV+QH  + G +  G+FSD ERQ+LA+ GSGD VWDWD+ RDRV
Sbjct: 374 PALGGGLVLIVLLIGFTVMQHAFSGGAYQLGLFSDLERQALALTGSGDTVWDWDVARDRV 433

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
            T PDI+  LGL+ G+M+GP+RNW+P +H +DRD FR  LD  + +RRGRL +EFRVRA 
Sbjct: 434 VTIPDISHQLGLSLGTMNGPVRNWVPRLHPDDRDRFRATLDVLLEHRRGRLNHEFRVRAE 493

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D  +HW+ IR RP+  +NG+I+R +G  NDITEQ+ S+E +L NA  DNLTG+PNRQ FL
Sbjct: 494 DGHYHWLSIRARPVLGANGEIIRCVGTINDITEQRNSVERLLHNALLDNLTGLPNRQVFL 553

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL  IL +    +++RPTV+ IDID+YK++ND+LGIA GD+VL++LTRR+  LL+  D 
Sbjct: 554 DRLQAILLMGDGSNSIRPTVLAIDIDRYKQVNDMLGIAAGDNVLIALTRRLRRLLRPQDT 613

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LARL G++FG+IL+SE +  KIADFA A+ K+I +P+N   REI +TASIG  SW   + 
Sbjct: 614 LARLGGDQFGLILMSERDPAKIADFADAVSKAIMVPLNYGNREINLTASIGLVSWLDQEQ 673

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHP 726
           +++ +L +AELAM+ AK  GGN VE FR +     SDR+ ++ DL  A+E  EL LVY P
Sbjct: 674 SAAGLLDDAELAMFRAKKAGGNRVEPFRPAFRTSGSDRLQLEADLKRAMERKELSLVYQP 733

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+RL D EI G EAL++WDHPK GNIS +EF+ IAE   +I  + LF  ++   D+  W+
Sbjct: 734 IVRLSDAEIAGFEALMRWDHPKRGNISPTEFIPIAENSDLINQLGLFAFDKATSDLAEWQ 793

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            Q    PIFI IN++S  LL+NEL + M+A++SK+   P++IK+  +ES+VM NPE++RL
Sbjct: 794 TQTGDLPIFISINLSSAQLLNNELYDDMRAILSKSRCDPAQIKMELTESLVMENPEQARL 853

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMA 906
           +L +LR+ G+ L LDDFGT  S LSYL   PFDT+K + +L+   ++KR  ILR++I MA
Sbjct: 854 VLEKLREAGLRLALDDFGTGHSSLSYLTRFPFDTIKIDKALVRDPSDKRAVILRAVITMA 913

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + ++  ++A+ I  E D  +L +MGCDY Q      P+G  SIL+LLKERFPL+K  
Sbjct: 914 RELDMRVVAEGIESEEDAIQLAQMGCDYGQSFLFGPPVGSESILRLLKERFPLMKRA 970


>gi|163842762|ref|YP_001627166.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163673485|gb|ABY37596.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 964

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/946 (47%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVTTFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|23501382|ref|NP_697509.1| sensory box protein [Brucella suis 1330]
 gi|148559584|ref|YP_001258498.1| diguanylate cyclase/phosphodiesterase [Brucella ovis ATCC 25840]
 gi|161618452|ref|YP_001592339.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|254703830|ref|ZP_05165658.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|256368934|ref|YP_003106440.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM
           4915]
 gi|260566916|ref|ZP_05837386.1| PAS domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261754481|ref|ZP_05998190.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella suis bv. 3 str. 686]
 gi|23347277|gb|AAN29424.1| sensory box/GGDEF domain/EAL domain protein [Brucella suis 1330]
 gi|148370841|gb|ABQ60820.1| diguanylate cyclase/phosphodiesterase domain 2 [Brucella ovis ATCC
           25840]
 gi|161335263|gb|ABX61568.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|255999092|gb|ACU47491.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM
           4915]
 gi|260156434|gb|EEW91514.1| PAS domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261744234|gb|EEY32160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella suis bv. 3 str. 686]
          Length = 964

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|265983636|ref|ZP_06096371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella sp. 83/13]
 gi|306837796|ref|ZP_07470660.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|264662228|gb|EEZ32489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella sp. 83/13]
 gi|306407137|gb|EFM63352.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 964

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDTILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|306842235|ref|ZP_07474898.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306287615|gb|EFM59062.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 964

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNTNASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ +VY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISIVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|306845109|ref|ZP_07477689.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
 gi|306274524|gb|EFM56319.1| GAF/GGDEF domain-containing protein [Brucella sp. BO1]
          Length = 964

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ +VY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISIVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ SW++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFSWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|17987736|ref|NP_540370.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|225852017|ref|YP_002732250.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457]
 gi|256044195|ref|ZP_05447102.1| GGDEF domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113010|ref|ZP_05453907.1| GGDEF domain protein [Brucella melitensis bv. 3 str. Ether]
 gi|256264478|ref|ZP_05467010.1| PAS domain-containing protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260563554|ref|ZP_05834040.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990610|ref|ZP_06103167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994442|ref|ZP_06106999.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
 gi|17983456|gb|AAL52634.1| diguanylate cyclase/phosphodiesterase domain 2 (eal) [Brucella
           melitensis bv. 1 str. 16M]
 gi|225640382|gb|ACO00296.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|260153570|gb|EEW88662.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765555|gb|EEZ11344.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
 gi|263001394|gb|EEZ13969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094809|gb|EEZ18547.1| PAS domain-containing protein [Brucella melitensis bv. 2 str. 63/9]
          Length = 964

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  +  + GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASPLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRS++ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSVVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|254718655|ref|ZP_05180466.1| diguanylate cyclase [Brucella sp. 83/13]
          Length = 952

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/946 (47%), Positives = 650/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 3   FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 62

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 63  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 122

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 123 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 182

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 183 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 242

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 243 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 302

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 303 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 362

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 363 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 422

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 423 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDTILENRRGRIGQIFRLRANDGHYH 482

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 483 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 542

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 543 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 602

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 603 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 662

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 663 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 722

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 723 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 782

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 783 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 842

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 843 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 902

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 903 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 948


>gi|62289462|ref|YP_221255.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699388|ref|YP_413962.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023711|ref|YP_001934479.1| PAS domain protein [Brucella abortus S19]
 gi|237814949|ref|ZP_04593947.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254688773|ref|ZP_05152027.1| PAS domain protein [Brucella abortus bv. 6 str. 870]
 gi|254693257|ref|ZP_05155085.1| PAS domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|254696903|ref|ZP_05158731.1| PAS domain protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729806|ref|ZP_05188384.1| PAS domain protein [Brucella abortus bv. 4 str. 292]
 gi|256257020|ref|ZP_05462556.1| PAS domain protein [Brucella abortus bv. 9 str. C68]
 gi|260545785|ref|ZP_05821526.1| PAS domain-containing protein [Brucella abortus NCTC 8038]
 gi|260754259|ref|ZP_05866607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 6 str. 870]
 gi|260757479|ref|ZP_05869827.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 4 str. 292]
 gi|260761304|ref|ZP_05873647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883284|ref|ZP_05894898.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|261213506|ref|ZP_05927787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 3 str. Tulya]
 gi|297247875|ref|ZP_06931593.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 5 str.
           B3196]
 gi|62195594|gb|AAX73894.1| sensory box/GGDEF domain/EAL domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615489|emb|CAJ10463.1| PAS domain:GGDEF:PAS-associated C-terminal domain:PAC motif:EAL
           domain [Brucella melitensis biovar Abortus 2308]
 gi|189019283|gb|ACD72005.1| PAS domain protein [Brucella abortus S19]
 gi|237789786|gb|EEP63996.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260097192|gb|EEW81067.1| PAS domain-containing protein [Brucella abortus NCTC 8038]
 gi|260667797|gb|EEX54737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 4 str. 292]
 gi|260671736|gb|EEX58557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674367|gb|EEX61188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 6 str. 870]
 gi|260872812|gb|EEX79881.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|260915113|gb|EEX81974.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella abortus bv. 3 str. Tulya]
 gi|297175044|gb|EFH34391.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 5 str.
           B3196]
          Length = 964

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 443/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  +  + GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASPLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ +L  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESELRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRS++ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSVVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|254707791|ref|ZP_05169619.1| diguanylate cyclase [Brucella pinnipedialis M163/99/10]
 gi|254709625|ref|ZP_05171436.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|254712959|ref|ZP_05174770.1| diguanylate cyclase [Brucella ceti M644/93/1]
 gi|254716687|ref|ZP_05178498.1| diguanylate cyclase [Brucella ceti M13/05/1]
 gi|256031118|ref|ZP_05444732.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|256159191|ref|ZP_05457004.1| diguanylate cyclase [Brucella ceti M490/95/1]
 gi|256254521|ref|ZP_05460057.1| diguanylate cyclase [Brucella ceti B1/94]
 gi|261218492|ref|ZP_05932773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella ceti M13/05/1]
 gi|261221698|ref|ZP_05935979.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|261315277|ref|ZP_05954474.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella pinnipedialis M163/99/10]
 gi|261317157|ref|ZP_05956354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella pinnipedialis B2/94]
 gi|261320658|ref|ZP_05959855.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella ceti M644/93/1]
 gi|265988195|ref|ZP_06100752.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           M292/94/1]
 gi|265997660|ref|ZP_06110217.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
 gi|260920282|gb|EEX86935.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|260923581|gb|EEX90149.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella ceti M13/05/1]
 gi|261293348|gb|EEX96844.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella ceti M644/93/1]
 gi|261296380|gb|EEX99876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella pinnipedialis B2/94]
 gi|261304303|gb|EEY07800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella pinnipedialis M163/99/10]
 gi|262552128|gb|EEZ08118.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
 gi|264660392|gb|EEZ30653.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           M292/94/1]
          Length = 964

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LA++G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAIIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++ R+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISWRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|227821119|ref|YP_002825089.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Sinorhizobium fredii NGR234]
 gi|227340118|gb|ACP24336.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Sinorhizobium fredii NGR234]
          Length = 971

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/962 (51%), Positives = 687/962 (71%), Gaps = 2/962 (0%)

Query: 4   SNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63
           ++S            V         + A+EP+ IS  D  LDLT+ T IY  +GE FQV 
Sbjct: 10  ASSTARLAAFLVAFAVFIFGVAGGVAHALEPVKISREDTALDLTATTEIYSGRGEAFQVS 69

Query: 64  TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123
           TA   DGI RRIEV +S+  H+GDWAVFALAN S+ QLER+IV PH+RLV S  F PDLG
Sbjct: 70  TAPGTDGIVRRIEVRSSTEHHQGDWAVFALANVSEEQLERVIVAPHFRLVNSKLFWPDLG 129

Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKD 183
           S+RI+S+TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E++TP LPQIYLW+P+ YKD
Sbjct: 130 SQRILSITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELATPELPQIYLWQPDAYKD 189

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243
           TVN+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VL YI +DFGFLSKL+
Sbjct: 190 TVNAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLAYICVDFGFLSKLI 249

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
           ++ +G+  IWRA +E+ L++ L+IFLF YL+ NRWH  +GY T + I  +A+LF ++ Y 
Sbjct: 250 SVTAGDERIWRAGTEVFLAAGLVIFLFTYLNLNRWHQHLGYATLAWILGLALLFGVAVYD 309

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P + + IAR++ A         I Y G   Y+RA+LL+PAW+LI +W  G W+A+T +L 
Sbjct: 310 PAIASGIARLSFALTATVGIVLIAYLGFNRYDRAILLVPAWLLILVWLFGAWLAVTGQLA 369

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           NDI+QPAL GGLVLIV+LIGFTV+QH  A G + QG+FSD ERQ+LA+ GSGD VWDWD+
Sbjct: 370 NDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAYQQGLFSDLERQALALTGSGDTVWDWDV 429

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            RDRV T PDI+  LGL+ G+M+GP+RNW+P +H +DRD FR  LD  + +RRGRL +EF
Sbjct: 430 ARDRVVTIPDISHQLGLSLGTMNGPVRNWVPRLHPDDRDRFRATLDVLLEHRRGRLNHEF 489

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R RA D  +HW+ IR RP+  +NG+I+R +G   DITEQ+ S+E +L NA  DNLTG+PN
Sbjct: 490 RARAEDGHYHWLSIRARPVLGANGEIIRCVGTIVDITEQRNSVERLLQNALLDNLTGLPN 549

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           RQ FLDRL  IL +S   + +RPTV+ IDID+YK++ND+LGIA GD++L++LTRR+  LL
Sbjct: 550 RQVFLDRLQAILLMSDGTNAVRPTVLAIDIDRYKQVNDLLGIAAGDNILIALTRRLRRLL 609

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D LARL G++FG+IL+SE +  KIADFA A+ K+I +P+N   REI +TASIG  SW
Sbjct: 610 RPQDTLARLGGDQFGLILMSERDPAKIADFADAVSKAIMVPLNYGNREINLTASIGLVSW 669

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721
              + +++ +L +AELAM+ AK  GGN VE FR +     SDR+ ++ DL  A+E  EL 
Sbjct: 670 LDQEQSAASLLDDAELAMFRAKKEGGNRVEPFRPAFRTSGSDRLQLEADLKRAIERKELS 729

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           LVY PI+RL D E+ G EAL++WDHPK GN+S +EF+ IAE   +I  + +F  ++   D
Sbjct: 730 LVYQPIVRLSDAEVAGFEALMRWDHPKRGNVSPTEFIPIAENSDIINQLGMFAFDQATSD 789

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W+ Q    PIF+ IN++S  LL++ L + ++A+++K    P+++K+  +ES+VM NP
Sbjct: 790 LSEWQIQTGDLPIFVSINLSSAQLLNSGLYDDVRAILNKNRCDPAKVKMELTESLVMENP 849

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRS 901
           E++RL+L +LR+ G+ L LDDFGT  S LSYL   PFDT+K + +L+   ++KR  +LRS
Sbjct: 850 EQARLVLEKLREAGLRLALDDFGTGHSSLSYLTRFPFDTIKIDKALVRDPSDKRGVVLRS 909

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           +I MA+ ++  ++A+ I  E D  +L +MGCDY Q      P+G  SIL+LLKERFPL+K
Sbjct: 910 VIAMARELDMRVVAEGIESEEDAIQLAQMGCDYGQSFLFGPPVGSESILRLLKERFPLMK 969

Query: 962 NT 963
             
Sbjct: 970 RA 971


>gi|326408511|gb|ADZ65576.1| GGDEF domain-containing protein [Brucella melitensis M28]
 gi|326538228|gb|ADZ86443.1| ggdef domain protein [Brucella melitensis M5-90]
          Length = 964

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLTVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  +  + GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASPLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRS++ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSVVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|294851857|ref|ZP_06792530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella sp. NVSL 07-0026]
 gi|294820446|gb|EFG37445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Brucella sp. NVSL 07-0026]
          Length = 964

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/946 (47%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+ ELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDVELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMKNPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|225626986|ref|ZP_03785025.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|260168249|ref|ZP_05755060.1| sensory box/GGDEF domain/EAL domain protein [Brucella sp. F5/99]
 gi|261757712|ref|ZP_06001421.1| PAS domain-containing protein [Brucella sp. F5/99]
 gi|225618643|gb|EEH15686.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|261737696|gb|EEY25692.1| PAS domain-containing protein [Brucella sp. F5/99]
          Length = 964

 Score =  928 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/946 (46%), Positives = 649/946 (68%), Gaps = 3/946 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAIHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LA++G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAIIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++ R+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISWRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  + G EAL++W+HP+ G IS SEF+ IAE   +I  + LF ++R A D+ +W++Q   
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSEFIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPK 794

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N++S  L+  +L   +++++S+   +P  +KL  +ESV+M NPE+S  +L RL
Sbjct: 795 LDLFVSVNLSSTQLIRQDLINDVRSVLSRIHLNPGSLKLELTESVLMENPEQSAYVLARL 854

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           + +GI L+LDDFGT  S L+YL   PFD +K + S + G   ++  +LRSI+ MA ++  
Sbjct: 855 KAMGIGLSLDDFGTGYSSLAYLTRFPFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGL 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ + +  E D  +L +MGC+Y+Q      P   +   ++++E+ 
Sbjct: 915 AVVTEGVESETDALQLRQMGCEYVQSFMFGQPTSHDEATRMIREQL 960


>gi|254472035|ref|ZP_05085436.1| PAS fold family protein [Pseudovibrio sp. JE062]
 gi|211959237|gb|EEA94436.1| PAS fold family protein [Pseudovibrio sp. JE062]
          Length = 962

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/955 (39%), Positives = 602/955 (63%), Gaps = 5/955 (0%)

Query: 13  KAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGIS 72
           +A L+  L L+ + S + A+E I +      LDLT    IY N  +  QV TA D DGI 
Sbjct: 6   QAVLLSALLLIVVASQALALEAIVVPKDVDALDLTGSVDIYPNTSKSIQVSTAPDSDGIV 65

Query: 73  RRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTP 132
           RRIEV +        WAVFAL+N  + Q++RL+V P+Y++ G     PDLG RRI+S+TP
Sbjct: 66  RRIEVRSVDDTASS-WAVFALSNPGEEQIDRLLVAPYYKMTGGGVLVPDLGQRRIVSLTP 124

Query: 133 SEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYR 192
           S+G    R  ++++D++RIT++PGA VTFI E++TP+LP+I LW+P  YKD +N++TLYR
Sbjct: 125 SQGIPPIRERSTEADIYRITLDPGANVTFIAEVNTPSLPEIRLWKPEAYKDNINAYTLYR 184

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252
           GI++G+A LLA+FLTI ++V  + +   T A+AW VL Y+ IDFGF + +     G+  +
Sbjct: 185 GIVLGIAGLLALFLTILFVVKGTVLFPATAALAWAVLVYLCIDFGFWNLVFGRTLGDDQL 244

Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312
           +RA +EI+L+++L++FL+ YL  NRWH    ++       +  LF ++ + P + A I+R
Sbjct: 245 YRAVAEISLTAALVVFLYAYLGLNRWHIHYTHLAIGLFITVISLFGLALWDPTIAAGISR 304

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
           I +  + +     I+   ++G+ERA++L+P W L   W    WMA T  L +D++QPAL 
Sbjct: 305 ILMGGVAIAGFGVILMLTVRGFERAIMLLPTWFLFLAWLFAAWMATTGMLQSDLVQPALA 364

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           GGLVL V+L+GFTV+QH  A    S  + SD ER++LA+ GSGDI+WDWD+ RD++ T+ 
Sbjct: 365 GGLVLFVLLLGFTVMQHAFAGSGLSHSVVSDVERRALALTGSGDIIWDWDVDRDKIHTSG 424

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +   LG+  G + GP R WL  +H  DRD FR  LD+ + +RRGR+   FR+R  D  +
Sbjct: 425 GLEEALGIKPGLLDGPARLWLEILHPQDRDLFRGTLDAVIDHRRGRVNQAFRLRGEDGHY 484

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W  +R RP+  S+G+++R +G   DIT QK + E ++ +A  DNLTG+PNR+ F+DRL 
Sbjct: 485 RWFKMRARPVLGSDGEVIRCVGTLLDITSQKTAEERLMHDAVHDNLTGLPNRELFMDRLV 544

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L  S  + +  PTV++ID+D++K++ND +G   GD +L++  RR+  L+K  D L+R+
Sbjct: 545 AALARSRAEGSGNPTVILIDLDRFKQVNDSIGQTAGDSMLLTAARRLSRLIKPQDSLSRI 604

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
           S + F +++ISE ++ +IA FA  +RKS+  P+   ++E+ +TASIG + +      +++
Sbjct: 605 SADTFAVLMISEQDATRIASFADELRKSLRTPVTFGDQEVFLTASIGASIFDGGPEKATD 664

Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++++AE+A+ HAK  GG+ +E FR       S+ + +  DL  A+E  E+ +V+ PI+RL
Sbjct: 665 LMRDAEIALNHAKRLGGDRIEIFRPTLKPVASNTLALDNDLRSALEKDEIKVVFQPIVRL 724

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D+   G EAL +W+HP  G I  SEF+ +AE+  +I  + L ++E+ AR +  W+ +  
Sbjct: 725 SDKTTAGFEALARWEHPSRGLIPPSEFIPVAEQSGLINELGLRVMEKGARQLAQWQREFK 784

Query: 791 M-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              P+F+ +NI+S+ LL  +L   ++A++++T  +P  +KL  +ES+VM NPE S  +L 
Sbjct: 785 HALPLFVSVNISSRQLLKPDLINDVKAVLARTALTPGSLKLELTESLVMQNPEFSVQVLE 844

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKN 908
           RL+ +G  L+LDDFGT  S LSYL    FDT+K + S +  + +     ILR+I+ +  +
Sbjct: 845 RLKGLGAGLSLDDFGTGYSSLSYLQRFQFDTIKIDQSFVRPNGQSARPVILRTIVALGHD 904

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +   ++A+    E D  EL ++GC+Y+Q  H   P+      ++LKE+F     +
Sbjct: 905 LGMEVVAEGAETESDALELFQLGCEYVQGFHFGQPMRAAEAGRMLKEQFAQQDRS 959


>gi|39933991|ref|NP_946267.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|192289411|ref|YP_001990016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|39647838|emb|CAE26358.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Rhodopseudomonas palustris CGA009]
 gi|192283160|gb|ACE99540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 959

 Score =  920 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/961 (42%), Positives = 617/961 (64%), Gaps = 6/961 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A L L + L+     + A++ +++ S    +DLT +     +  +  Q+ TA 
Sbjct: 1   MRLIRCLALLALGVMLVAAAPQAHALDAVSVRSDAPAIDLTGVLEHLHSDNDRVQISTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RR+EV A       +W VFALAN SD QL+RLIV PHYR+VGS    PDLG  R
Sbjct: 61  GNDGIVRRVEVRAREGGQ--NWVVFALANNSDDQLDRLIVAPHYRMVGSGLLWPDLGMSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   +R  ++ +D+FR+T++PG+V+TF+ E+ T  LPQ+YLWEP  YKD VN
Sbjct: 119 IATITPSTGDRPERQDSATADIFRVTLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI IDFGF  K++++ 
Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWGKVLDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           SG   +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 SGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IARI+L +I       I+Y    G++RAVLLIP W L+ +W +   MA+   + NDI
Sbjct: 299 ASGIARISLVAIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVASGMAVAGTVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  + G  + G+ SD ER++LA++GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFSGGGATGGVISDVERRALALIGSGDLIWDWDVSAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+   +LGL  G++ G   +WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 419 KVFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  ++G++ R +G   D+TE K + E +L ++  DNLTG+PNR+ 
Sbjct: 479 TPDGHFMWFSLKARPVVGTDGEVTRVVGTLTDVTEIKNAEERMLHDSVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  + + + T   LRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 539 FIDRLGAVSNFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRILKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LAR++G++FG+IL+SE +  KI  FA  +RK+I  PI   +REI +TASIG A     
Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              S E++K+AELAMYH+K  GG+ ++ ++ +      DR+ ++ +L  A+E  E+ ++Y
Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERKEITILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  I G EAL +WDHPK G +S SEF+ IAEE+ +I  +  F+L++ A+ +  
Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVELGTFVLDQTAKQLSI 778

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +N++S+ LL ++L   ++ + S++  +   +KL  +ES+VM NPE 
Sbjct: 779 WQRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVTSRSSVARGTLKLELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++G+ L LDDFGT  S LSYL   PFDT+K + S +  ++      IL+SI
Sbjct: 839 AAQMLQRIRELGVGLALDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           I +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ +KLL E   L   
Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDVDAAMKLLTEEQRLEAA 958

Query: 963 T 963
           +
Sbjct: 959 S 959


>gi|209886437|ref|YP_002290294.1| multi-sensor diguanylate cyclase/phophodiesterase [Oligotropha
           carboxidovorans OM5]
 gi|209874633|gb|ACI94429.1| multi-sensor diguanylate cyclase/phophodiesterase [Oligotropha
           carboxidovorans OM5]
          Length = 984

 Score =  918 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/963 (42%), Positives = 604/963 (62%), Gaps = 10/963 (1%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +RS    A L L   +L    P+ A++ I++ +    +DLT +     +  +  QV TA 
Sbjct: 1   MRSIRCYALLALSFLILAAAQPAHAVDAISVRTDAPAIDLTGVLEFQHSDTDRIQVSTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RRIEV A       +W VFAL NT+D Q++RLIVVPHYR+V S    PDLG  R
Sbjct: 61  GPDGIVRRIEVRAREGG--KNWLVFALTNTTDEQIDRLIVVPHYRIVASGLLWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   DR  ++ +D+FRIT++PGAVVT++ E+ T  +PQ+YLWEP  YKD VN
Sbjct: 119 IATITPSAGDRPDRQDSATADIFRITLDPGAVVTYVAELRTDAIPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI IDFGF  K+ ++ 
Sbjct: 179 SFTLYHGIVIGISGLLALVLTILFVVKGSIMFPAASALAWAVLVYIGIDFGFWGKVFDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
                +WRA  E  L+++ ++FLF YL+ +RWH +  +IT   +  +  L  ++ + P V
Sbjct: 239 VDAERVWRASGEAMLTAAFLVFLFAYLNLSRWHVRYSHITLGWLVFLGALVGLALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IARI+L  I       I+    +G++RAVLLIP W L  IW I   M +T  + NDI
Sbjct: 299 ASGIARISLLLIAAAGFVLIVTLSTQGFDRAVLLIPTWFLFLIWVIAAGMTVTGAVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A G  + GI SD ER++LA+ GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGATT-GIVSDVERRALALTGSGDLIWDWDVSAD 417

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+   +LGL  G++ GP   WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 418 KVFTSPETEGLLGLKRGTLEGPAARWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLR 477

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  S+G++ R +G  +D+TE K + E +L ++  DNLTG+PNRQ 
Sbjct: 478 TPDGHFMWFALKARPVVGSDGEVARVVGTLSDVTEIKNAEERMLHDSVHDNLTGLPNRQL 537

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRLT +     T  NLRPTVMVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 538 FIDRLTALAGFIKTAPNLRPTVMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 597

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LAR+ G++FG++L SE+   +I   A  +RK+I  PI   EREI +TASIG A     
Sbjct: 598 DTLARIGGDQFGLLLTSEHEPARITALAETIRKTIRAPIAFNEREIFLTASIGLALSDPQ 657

Query: 667 KITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
              + E++K+AELAMYH+K  G     V    + S ++DR+ ++ DL  A+E  E+ ++Y
Sbjct: 658 APLTDEIIKDAELAMYHSKRLGGDRIDVYKPPMRSRKTDRLTLESDLRRAIERQEIAILY 717

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  + G EAL +WDHP+ G +S SEF+ IAEE+ +I  + LF+++  A+ + +
Sbjct: 718 QPIMRLEDRTVAGFEALARWDHPRLGRMSPSEFISIAEEIGLIVDLGLFVMDATAKQLST 777

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       P+F  +N++S+ LL ++L   ++ ++S++  +   +KL  +ES+VM NPE 
Sbjct: 778 WQRATRTRVPLFASVNVSSRQLLRHDLIHDVRGVLSRSAVARGSLKLELTESLVMENPEH 837

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSI 902
           +  +L R++++G  L+LDDFGT  S LSYL   PFDT+K + S +  +    R  +L+SI
Sbjct: 838 AAQMLQRIKELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTRNGARPTLLKSI 897

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL---KERFPL 959
           I MA ++   ++A+    + D  EL ++GC Y Q      P+   S  +LL   K   P 
Sbjct: 898 IAMAHDLGMEVVAEGAETDSDAVELYQLGCQYAQGFAFGEPMDAASATRLLTGDKTEAPR 957

Query: 960 VKN 962
            + 
Sbjct: 958 ARR 960


>gi|118590740|ref|ZP_01548141.1| hypothetical protein SIAM614_06218 [Stappia aggregata IAM 12614]
 gi|118436716|gb|EAV43356.1| hypothetical protein SIAM614_06218 [Stappia aggregata IAM 12614]
          Length = 969

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/960 (41%), Positives = 622/960 (64%), Gaps = 6/960 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFL-LWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGED 59
           +++ + +RS F    + L LF  L    P+ A+EPI +      LD+T+   ++   G  
Sbjct: 3   IVIPDPIRSVFRNLVIALALFATLLGSLPARALEPIPVPIDVEALDITNSVDLHREAGTR 62

Query: 60  FQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFS 119
            QV TA   DGI RRIEV +       +WAVFALANTSD Q++RLIV P+Y+LVGS  F 
Sbjct: 63  LQVSTAPGADGIVRRIEVPSRE-GTNTNWAVFALANTSDEQIDRLIVAPNYKLVGSDLFW 121

Query: 120 PDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPN 179
           PDLGS RI+++TPS+G + +R  + ++DVF +T++PG++VTF+ E++TPNLP+I +WEP+
Sbjct: 122 PDLGSSRILAITPSQGIAPERQKSLEADVFLVTLDPGSIVTFVAEMTTPNLPEIRIWEPD 181

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239
            Y++TVN++TLYRGII+G++ LLA+FLTI ++V  + M   T A+AW VL Y+ IDFGF 
Sbjct: 182 VYEETVNAYTLYRGIILGISGLLALFLTILFVVKGTVMFPATAALAWSVLAYLCIDFGFW 241

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
             + NL  G   + RAC+E+ L++SLIIFL+ YL+ NRW+    ++  + +  I  L  +
Sbjct: 242 GMVFNLEGGGSQLARACAEVMLAASLIIFLYAYLNLNRWNIHYSHLALTTLILILGLLGV 301

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + + P + A IAR+ LA I +     I     + Y+RA+LLIP W L+  W +G  M +T
Sbjct: 302 AVWDPSIAAGIARLALAVIGILGFVTIAVLAFQHYDRAILLIPTWCLLMAWLVGAAMTVT 361

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
             L NDI+QPAL GGLVLIV+LIGFTV+QH  A G  +QG+ SD ER++LA+ G+GDI+W
Sbjct: 362 GYLSNDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAIAQGLISDVERKALALTGAGDIIW 421

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           DWDI RDR+ T  ++  +L L  G++ GP R+WL  +H  DRD FR  LD+ +  RRG++
Sbjct: 422 DWDIDRDRIYTGNEVEDLLNLKRGTLEGPARDWLDILHPQDRDRFRATLDAVIDQRRGKV 481

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
              FR+R+ D  F W  +R RP+  S+G+++R +G   D+TE++ + E +L +A  DNLT
Sbjct: 482 TQTFRLRSEDGHFRWFRLRARPIIGSDGEVIRCVGTLLDVTEERTAEERLLHDAVHDNLT 541

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+ F+DRL T +  S  ++  +PT++V+++D++K++ND +G++ GD +L+++ RR+
Sbjct: 542 GLPNRELFVDRLRTSVIRSRAEETTKPTLLVLNLDRFKQVNDSIGLSAGDSILLTVARRL 601

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
           G L+   D L RLSG+++G++L+SE    +I   A ++RK++  PI   +REI +T S+G
Sbjct: 602 GRLIGQQDTLGRLSGDQYGLVLLSEQEPDRIVALADSLRKAVRAPITFGDREIFLTCSVG 661

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVEN 717
            A +   K    +M+ NAE+A+ HAK  GG+  E FR        + V ++ DL  A++ 
Sbjct: 662 IAFFEGGKQAVEDMVTNAEIALNHAKRLGGDRQEVFRPILRPLDKNIVDLEADLREAIKK 721

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L + + PIIRL D+ + G E L +W+H K G IS SEF+ +AE+  +I  + ++ML++
Sbjct: 722 ETLGVYFQPIIRLEDQSVAGFEVLARWNHAKRGKISPSEFIPVAEQSGLINELGIYMLDK 781

Query: 778 IARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            A+ +  W+ +  +P P+F  +N++S+ LL  +L   ++A++S+T  +P  +KL  +ES+
Sbjct: 782 GAQQLAFWQREFPLPQPLFASVNLSSRQLLKQDLINDVKAVLSRTSLTPGTLKLELTESL 841

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKR 895
           VM NPE S  +L RLR +G  L+LDDFGT  S LSYL   PFDT+K + S +    +  R
Sbjct: 842 VMSNPEYSAKVLERLRGLGAGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVKPNGSSAR 901

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +LR+I+ M  ++  +++A+    E D  EL ++GC++ Q  +    +      K+L++
Sbjct: 902 PVLLRTIVAMGHDLGMSVVAEGAESENDALELYQLGCEFAQGFYFGEAVTAAEATKILRK 961


>gi|316932456|ref|YP_004107438.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315600170|gb|ADU42705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Rhodopseudomonas
           palustris DX-1]
          Length = 959

 Score =  917 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/961 (42%), Positives = 615/961 (63%), Gaps = 6/961 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A L L + ++     + A++ +++ S    +DLT +     +  +  Q+ TA 
Sbjct: 1   MRLIRCLALLALGVMMIAAAPQAHALDAVSVRSDAPAIDLTGVLEHLHSDNDRIQISTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RR+EV A       +W VFALAN +D QL+RLIV PHYR+VGS    PDLG  R
Sbjct: 61  GNDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRMVGSGLLWPDLGMSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   +R  +  +D FRIT++PG+V+TF+ E+ T  LPQ+YLWEP  YKD VN
Sbjct: 119 IATITPSTGDRSERQESPTADTFRITLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI IDFGF  K++++ 
Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWGKVLDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           SG   +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 SGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IARI+L  I       I+Y    G++RAVLLIP W L+ +W +   MA+   + NDI
Sbjct: 299 ASGIARISLVLIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVASGMAVAGAVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  + G  + G+ SD ER++LA++GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFSGGGATGGVISDVERRALALIGSGDLIWDWDVSAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+   +LGL  G++ G   +WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 419 KVFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  ++G++ R +G   D+T+ K + E +L ++  DNLTG+PNR+ 
Sbjct: 479 TPDGHFMWFSLKARPVVGTDGEVTRVVGTLTDVTDIKNAEERMLHDSVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  + + + T   LRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 539 FIDRLGAVANFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRILKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LAR++G++FG+IL+SE +  KI  FA  +RK+I  PI   +REI +TASIG A     
Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              S E++K+AELAMYH+K  GG+ ++ ++ +      DR+ ++ +L  A+E  E+ ++Y
Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERKEITILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  I G EAL +WDHPK G +S SEF+ IAEE+ +I  +  F+L++ A+ +  
Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVELGTFVLDQTAKQLSI 778

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +N++S+ LL ++L   ++ + S++  +   +KL  +ES+VM NPE 
Sbjct: 779 WQRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVTSRSSVARGTLKLELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++GI L+LDDFGT  S LSYL   PFDT+K + S +  ++      IL+SI
Sbjct: 839 AAQMLQRIRELGIGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           I +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ +KLL E   L   
Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDVDAAMKLLTEEQRLEAA 958

Query: 963 T 963
           +
Sbjct: 959 S 959


>gi|90422309|ref|YP_530679.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104323|gb|ABD86360.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Rhodopseudomonas palustris BisB18]
          Length = 958

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/954 (42%), Positives = 619/954 (64%), Gaps = 6/954 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A   L   ++   SP+ A++ +++      +DLT++     ++G+  QV TA 
Sbjct: 1   MRLIRCLALAALGFMMIAAGSPANALDAVSVRGDAPAIDLTAVLDHQRSEGDRIQVSTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RRIEV A       +W VFALAN +D QL+RLIV PHYR+V S  F PDLG  R
Sbjct: 61  GTDGIVRRIEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRIVSSGLFWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I +VTPS G   +R  +  +DVFR+T++PGAV+TF+ E+ T  LPQ+YLWEP  YKD VN
Sbjct: 119 IATVTPSTGDRPERQDSPTADVFRVTLDPGAVITFVAELRTDKLPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K++++ 
Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           SG   +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 SGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IAR++L  I       I+Y    G++RAVLLIP W L+ +W I   MA+   + NDI
Sbjct: 299 ASGIARMSLVLIAFAGFALILYLSTHGFDRAVLLIPTWFLLVVWVIAAGMAVAGSVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A G    G+ SD ER++LA+ GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGSAPTGVVSDIERRALALTGSGDLIWDWDVSAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+  T+LGL  G++ G    WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 419 KVFTSPETETLLGLKRGTLEGSAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLTQDFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D +F W  ++ RP+  S+G++ R +G   D+TE K + E +L ++  DNLTG+PNR+ 
Sbjct: 479 TPDGRFMWFALKARPVVGSDGEVSRVVGTLTDVTEIKNAEERMLHDSVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  + + +    NLRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 539 FIDRLNAVANFAKAMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LARL+G++FG+IL+SE +  KI  FA  +RK+I  PI   +REI +TASIG A     
Sbjct: 599 DTLARLAGDQFGLILMSEQDPAKITAFAETIRKTIRAPIAFNDREIFLTASIGLALSDPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724
              + E++K+AELAMYH+K  GG+ ++ ++  + + ++DR+ ++ +L  A+E  E+ ++Y
Sbjct: 659 TQLTDEIIKDAELAMYHSKRIGGDRIDVYKPVMRARKTDRLTLESELRRAIERQEITILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  I G EAL +WDHPK G +S SEF+ IAEE+ +I  + +F++++ A+ +  
Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFISIAEEIGLIVDLGMFVMDQTAKQLAI 778

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +N++S+ LL ++L   ++ ++S++  +   +KL  +ES+VM NPE 
Sbjct: 779 WQRAMRSREPIFASVNVSSRQLLRHDLLHDIRTVLSRSTVARGTLKLELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++G  L+LDDFGT  S L+YL   PFDT+K + S +  ++      IL+SI
Sbjct: 839 AAQMLHRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ +KLL E 
Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMKLLTEE 952


>gi|92119009|ref|YP_578738.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91801903|gb|ABE64278.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrobacter hamburgensis X14]
          Length = 960

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/956 (42%), Positives = 620/956 (64%), Gaps = 6/956 (0%)

Query: 5   NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64
            +LR     A L L   +    SP+ AI+ +++ S    +DLT+I     +  +  QV T
Sbjct: 1   MTLRPVRWLACLALAFMIFVAASPARAIDAVSVRSDAPAIDLTAILDHQHSDSDRIQVST 60

Query: 65  AADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124
           A   DGI RR+EV A       +W VFALAN +D QL+RLIV PHYRLV S    PDLG 
Sbjct: 61  APGTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRLVSSGLLWPDLGQ 118

Query: 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDT 184
            RI ++TPS G   +R  ++ +DVFRIT++PGAV+TF+ME+ T  LPQ+YLWEP+ YKD 
Sbjct: 119 SRIATITPSTGDRPERQESATADVFRITLDPGAVITFVMELRTDKLPQLYLWEPDAYKDK 178

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
           +NSFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K+++
Sbjct: 179 INSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLD 238

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
           + +G   +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P
Sbjct: 239 MSAGAERVWRASGEAMLAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDP 298

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
            V + IAR++LA I ++    I+Y  + G++RAVLLIP W L+ +W     M +   + N
Sbjct: 299 AVASGIARMSLALIAVFGFGLIVYLAIHGFDRAVLLIPTWFLLVVWVGAAGMTVEGNVTN 358

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           DI+ PAL+GGLVLIV+LIGFTV+QH  A G  + G+ SD ER++LA+ GSGD+VWDWD+ 
Sbjct: 359 DIVGPALLGGLVLIVMLIGFTVMQHAFAGGGATAGVVSDVERRALALTGSGDLVWDWDVS 418

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D+V T+P+  ++LGL  G++ GP  +WL  +H  D+D FR  LDS +  RRGRL  +FR
Sbjct: 419 ADKVFTSPETESLLGLKRGTLEGPAASWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFR 478

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +R  D  F W  ++ RP+  S+G++ R +G   D+TE +K+ E +L ++  DNLTG+PNR
Sbjct: 479 LRTPDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEARKAEERMLHDSVHDNLTGLPNR 538

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F+DRL  +   + T  NLRPT+MVID+D++K++ND +G+A GD +L++L RR+  +LK
Sbjct: 539 KLFIDRLNAVATFAKTMPNLRPTLMVIDLDRFKQVNDSVGVAEGDSILLTLARRLTRILK 598

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D LARL+G++FG+IL+SE +  +I  FA  +RK+I  PI   +REI +TASIG A   
Sbjct: 599 AQDTLARLAGDQFGLILMSEQDPARITAFAETIRKTIRAPIAFNDREIFLTASIGLALSD 658

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722
                + E++K+AELAMYH+K  GG+ ++ ++ +      DRV ++ +L  A+E  E+ +
Sbjct: 659 PQTQLTEEIVKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRVTLEAELRRAIERREIAI 718

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           +Y PI+RL D  + G EAL +WDHPK G ++  EF+ IAEE  +I  I  F++++ AR +
Sbjct: 719 LYQPIVRLEDRAVAGFEALARWDHPKLGRMAPDEFITIAEEAGLIVDIGTFVMDQTARQL 778

Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             W+       PIF  +N++S+ LL ++L   ++A++S++  +   +KL  +ES+VM NP
Sbjct: 779 AVWQRAMRSQTPIFASVNVSSRQLLRHDLINDIRAVLSRSSIARGTLKLELTESLVMENP 838

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILR 900
           E +  +L R+R++G+ L+LDDFGT  S LSYL   PFDT+K + S +  ++      IL+
Sbjct: 839 EHAAQMLQRIRELGVGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILK 898

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           SII +A ++   ++A+    + D  EL ++GC+  Q      P+  ++ ++LL + 
Sbjct: 899 SIIALAHDLGMDVVAEGAETDSDAVELYQLGCECAQGFAFGEPMDADATMRLLAQE 954


>gi|254504341|ref|ZP_05116492.1| hypothetical protein SADFL11_4380 [Labrenzia alexandrii DFL-11]
 gi|222440412|gb|EEE47091.1| hypothetical protein SADFL11_4380 [Labrenzia alexandrii DFL-11]
          Length = 970

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/968 (40%), Positives = 617/968 (63%), Gaps = 7/968 (0%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPS-FAIEPINISSSDRVLDLTSITRIYVNQGED 59
           + +   + +    A L+    +L +   +  A+EPI++      LD+T+   ++ + G  
Sbjct: 3   ISVPVHIFNLIRSAILVAAAMMLIVAPQAARALEPISVPLDIEALDITNAIDMHRDAGTR 62

Query: 60  FQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFS 119
            QV TA   DGI RRIEV + S     +WAVFALANTSD Q++RLIV P+Y+ VGS  F 
Sbjct: 63  LQVSTAPGADGIVRRIEVPSRS-GENTNWAVFALANTSDEQVDRLIVAPNYKFVGSDLFW 121

Query: 120 PDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPN 179
           PDLGS RI S+TPS+G +  R  + ++DVF +T++PG+VVTF+ E++TPNLP+I +WEP+
Sbjct: 122 PDLGSSRIASITPSQGIAPSRQKSLEADVFLVTLDPGSVVTFVAELTTPNLPEIRVWEPD 181

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239
            YK+TVN+++LYRGII+G++ LLA+FLTI ++V  + M   T A+AW VL Y+ IDFGF 
Sbjct: 182 VYKETVNAYSLYRGIILGISGLLALFLTILFVVKGTVMFPATAALAWSVLAYLCIDFGFW 241

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
             +  L  G   + RA +E+ L++SLIIFL+ YL+ NRW+    ++  + +  +  L  +
Sbjct: 242 GMVFKLEGGSSQLARASAEVMLAASLIIFLYAYLNLNRWNIHYSHLALTTLILLLGLLGV 301

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + + P + A IAR++L  I L     I     + Y+RA+LLIP W L+  W IG  M +T
Sbjct: 302 AVWDPSIAAGIARLSLGIIGLLGFVTIAVLAYQHYDRAILLIPTWCLLIAWLIGAAMTVT 361

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            RL NDI+QPAL GGLVLIV+LIGFTV+QH  A G  +QG+ SD ER++LA+ G+GDI+W
Sbjct: 362 GRLSNDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAIAQGLISDVERKALALTGAGDIIW 421

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           DWDI RD++ T  ++  +L L  G++ GP R+WL  +H  DRD FR  LD+ +  RRG++
Sbjct: 422 DWDIDRDKIYTGNEVEDLLNLKHGTLEGPARDWLEILHPQDRDRFRATLDAVIDQRRGKI 481

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q  FR+R+ D  F W  +R RP+  ++G+++R +G   D+TE++ + E +L +A  DNLT
Sbjct: 482 QQTFRLRSEDGHFRWFRLRARPIVGADGEVIRCVGTMLDVTEERTAEERLLHDAVHDNLT 541

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+ F+DRL T +  +  ++  +PTV+VI++D++K++ND +G++ GD +L+++ RR+
Sbjct: 542 GLPNRELFVDRLQTSVVRAQAEETTKPTVLVINLDRFKQVNDSIGLSAGDSILLTVARRL 601

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
           G L+   D L RLS +++G++L+SEN   +I   A A+RK++  PI   +REI +T S+G
Sbjct: 602 GRLIGQQDTLGRLSSDQYGLVLLSENEPDRIVALADALRKAVRAPITFSDREIFLTCSVG 661

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVEN 717
            + +   K    +ML NAE+A+ HAK  GG+  E +R        + V ++ DL  A++ 
Sbjct: 662 ISFFEGGKQAVEDMLTNAEIALNHAKRLGGDRQEVYRPILRPLGKNIVDLEADLREAIKK 721

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L + + PIIRL D+ I G E L +W+HPK G IS +EF+ IAE+  +I  + ++ML++
Sbjct: 722 ETLGVFFQPIIRLEDQAIAGFEVLARWNHPKRGKISPAEFIPIAEQSGLINDLGMYMLDK 781

Query: 778 IARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            A  +  W+ +  MP P+F  +N++S+ LL  +L   ++A++S+       +KL  +ES+
Sbjct: 782 GASQLAFWQREFPMPRPLFTSVNLSSRQLLKQDLINDVKAILSRNSLEVGTLKLELTESL 841

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKR 895
           VM NPE S  +L RLR +G  L+LDDFGT  S LSYL   PFDT+K + + +    +  R
Sbjct: 842 VMSNPEYSAKVLERLRSLGAGLSLDDFGTGHSSLSYLQRFPFDTIKIDQAFVKPDGSAAR 901

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +LR+I+ M  ++  +++A+    E D  EL ++GC Y Q  +    +      K+L+ 
Sbjct: 902 PVLLRTIVAMGHDLGMSVVAEGAESENDALELFQLGCQYAQGFYFGEAVSAAEATKMLR- 960

Query: 956 RFPLVKNT 963
           + P+ +  
Sbjct: 961 KMPVAEAA 968


>gi|299134147|ref|ZP_07027340.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Afipia sp. 1NLS2]
 gi|298590894|gb|EFI51096.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Afipia sp. 1NLS2]
          Length = 995

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/952 (43%), Positives = 606/952 (63%), Gaps = 7/952 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +RS    A L L   +L  + P+ A++ I++ +    +DLT +     +  +  QV TA 
Sbjct: 1   MRSIRCYALLALSFLMLAALQPAHAVDAISVRTDAPAIDLTGVLEFQHSDTDRIQVSTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RRIEV A       +W VFAL NT+D Q++RLIVVPHYR+V S    PDLG  R
Sbjct: 61  GPDGIVRRIEVRAREGG--KNWVVFALTNTTDEQIDRLIVVPHYRIVSSGLLWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   DR  +S +D+FRIT++PGAVVT++ E+ T  +PQ+YLWEP  YKD VN
Sbjct: 119 IATITPSAGDRPDRQDSSTADIFRITLDPGAVVTYVAELRTDAIPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG+A LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K+ ++ 
Sbjct: 179 SFTLYQGIVIGIAGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVFDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
                +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 IDAERVWRASGEAMLAATLLVFLFAYLNLSRWHVRYSHITIGWLAFLGALVALALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IARI+L  I       I+Y   +G++RAVLLIP W L  +W I   M +T  + NDI
Sbjct: 299 ASGIARISLFLIAGAGFALIVYLATQGFDRAVLLIPTWFLFLVWVIAAGMTVTGAVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A G  S G+ SD ER++LA+ GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGTTS-GVVSDVERRALALTGSGDLIWDWDVSAD 417

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+   +LGL  G++ GP   WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 418 KVFTSPETEGLLGLKRGTLEGPAARWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLR 477

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  S+G++ R +G  +D+TE K + E +L ++  DNLTG+PNRQ 
Sbjct: 478 TPDGHFMWFALKARPVVGSDGEVARVVGTLSDVTEIKNAEERMLHDSVHDNLTGLPNRQL 537

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  +     T  NLRPTVMVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 538 FMDRLNAMASFIKTAPNLRPTVMVIDLDRFKQVNDSVGIAVGDSILLTLARRLARILKPQ 597

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LARL+G++FG++L SE+   KI   A  +RK+I  PI   EREI +TASIG A     
Sbjct: 598 DTLARLAGDQFGLLLTSEHEPAKITALAETIRKTIRAPIAFNEREIFLTASIGLALSDPQ 657

Query: 667 KITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
              + E++K+AELAMYH+K  G     V    + + ++DR+ ++ +L  A+E  E+ ++Y
Sbjct: 658 APLTDEIVKDAELAMYHSKRIGGDRIDVYKPPMRARKTDRLTLESELRRAIERQEITILY 717

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  + G EAL +WDHPK G +S SEF+ IAEE+ +I  +  F+++  AR + +
Sbjct: 718 QPIMRLEDRAVAGFEALARWDHPKLGRMSPSEFITIAEEIGLIVDLGQFVMDTTARQLSA 777

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       P+F  +N++S+ LL ++L   ++ ++S++  +   +KL  +ES+VM NPE 
Sbjct: 778 WQRATRTRVPLFASVNVSSRQLLRHDLIHDVRGVLSRSAVARGSLKLELTESLVMENPEH 837

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSI 902
           +  +L R++++G  L+LDDFGT  S LSYL   PFDT+K + S +  +    R  +L+SI
Sbjct: 838 AAQMLHRIKELGTGLSLDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTRNGVRPTLLKSI 897

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I MA ++   ++A+    + D  EL ++GC+Y Q      P+   S  +LL 
Sbjct: 898 IAMAHDLGMEVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDAASATRLLT 949


>gi|90420104|ref|ZP_01228012.1| putative signaling protein, EAL, GGDEF, and 7TM-DISM domains
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335438|gb|EAS49188.1| putative signaling protein, EAL, GGDEF, and 7TM-DISM domains
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 977

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/963 (44%), Positives = 635/963 (65%), Gaps = 4/963 (0%)

Query: 4   SNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63
              L + +  +   +++ L+    PS A+E ++IS  D  +D+     +Y  +G  FQV 
Sbjct: 15  PIGLAARWFLSLAFVLVALIVSAPPSLALEAVSISRGDTAIDMLPAVDVYRGKGRAFQVA 74

Query: 64  TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123
           T    DGI RRIE+ A S +  GDWAVFALAN +D Q++RL+V PH+RLVGS    PDLG
Sbjct: 75  TVPGADGIVRRIEIEAQSAQASGDWAVFALANNTDKQIDRLVVAPHFRLVGSGVVWPDLG 134

Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKD 183
           S+RI S+TPS+GF+L+R P++D+DVF +T++PGA+VTF+ E+++PNLP + LWEPN YKD
Sbjct: 135 SQRIASITPSQGFALERQPSTDADVFLVTLDPGAIVTFVAELASPNLPDLRLWEPNAYKD 194

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243
           TVN+FTLYRGI++G+A LLA+FLTI ++V  S+M   T ++AW VL YI IDF F  KLV
Sbjct: 195 TVNAFTLYRGIVLGIAGLLAVFLTILFVVKGSAMFPATASLAWAVLAYICIDFDFWQKLV 254

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
            +  G+  +WRA +E++L+ +L++FLF YL+ NRWH  +   T   +A +  +  ++ + 
Sbjct: 255 PILPGQERVWRAGTEVSLAFTLVLFLFAYLNLNRWHGVLSIFTIMWLAALGTVGVVAAFD 314

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P+V + IARI+LA+  +     I    ++  +RA++LIP W L+ +W    W  +T R+D
Sbjct: 315 PVVASGIARISLAATAVLGLGIIGTLAVQRSDRAIMLIPTWCLVILWVFAGWSTVTGRID 374

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           NDIIQPAL GGLVLIV+LIGFTV+QH  A G F+QG+ SD ER+SLA+ G+GD ++DWD+
Sbjct: 375 NDIIQPALGGGLVLIVLLIGFTVMQHAFAGGGFAQGLLSDLERRSLALAGTGDAIFDWDV 434

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            RDR+    D  T+ G+  G+M+GP R+WLP +H +DRD F+  LD+ + +RRGR+  +F
Sbjct: 435 SRDRIFAGADGDTLAGMPVGTMNGPARDWLPVLHPDDRDRFKVTLDTILEHRRGRIIQDF 494

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R+R  D  +HW+ +R RP+  S+G+++R +G   D+T+ KK+ E +L +A  D LTG+PN
Sbjct: 495 RLRDEDGHYHWVSLRARPVLGSDGEVVRCVGTLKDVTDAKKAEERLLHDALHDQLTGLPN 554

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+ F DRL  I  L+ T  +++PT++VID+D++K++ND  GIA GD +L+++ RR+  LL
Sbjct: 555 RELFRDRLEAIGVLAMTRADVQPTIIVIDLDRFKQVNDDFGIATGDTILLTIGRRLKRLL 614

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           K  D LARL  ++FG+IL+SE     +ADFA  +R +I  PI    REI +T SIG   W
Sbjct: 615 KPQDSLARLGSDQFGLILLSETEVTAVADFAEGLRNAIKAPIAFANREIVLTGSIGLTGW 674

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721
           T    TS E LK AELAMY AK  GG+ +E FR +       R+ ++ DL  A E +EL 
Sbjct: 675 TE-ASTSDEALKEAELAMYQAKRNGGDSIEPFRPAYRSVGYGRLELESDLRRAFERNELS 733

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L + PI+ L  E+I G EAL++W+HP+ G IS +EF+ IAE   +I  +  F LE   R 
Sbjct: 734 LAFQPIVTLESEDIAGFEALLRWEHPRRGAISPAEFVPIAESTGLIVQLGQFALEEACRR 793

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W+       +F+ +NI+S+ L+  +L   ++ ++ +   SP+ +KL  +ES+VM NP
Sbjct: 794 LGDWQRMTGDENLFVSVNISSRQLIRQDLIGDVKTVLERYRISPNSLKLELTESLVMDNP 853

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILR 900
           ERS  LL RL+ +G+ L+LDDFGT  S L+YL   PFDT+K + S +  ++  +R  IL 
Sbjct: 854 ERSAQLLTRLKALGVGLSLDDFGTGYSSLAYLMGFPFDTLKIDQSFLKNNSQPQRPIILH 913

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           SI+ MA ++   ++A+ I  + D+ +L ++GC+Y Q    + PLG + + K+L +R   +
Sbjct: 914 SIVTMAHDLGLKVVAEGIESDADVMQLRQLGCEYAQSFKFSPPLGSDQVRKILDDRAVGL 973

Query: 961 KNT 963
           K  
Sbjct: 974 KRA 976


>gi|146338203|ref|YP_001203251.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS278]
 gi|146191009|emb|CAL75014.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Bradyrhizobium sp. ORS278]
          Length = 968

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/957 (42%), Positives = 618/957 (64%), Gaps = 7/957 (0%)

Query: 5   NSLRSHFEKA-FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63
            +LR     A  + L L +   V+P+ A++ +++ S    +DLT I     ++ +  QV 
Sbjct: 8   LTLRLVRCLASLVALGLVMCGAVAPAQAVDAVSVRSDAPAIDLTGILDHQRSENDRIQVS 67

Query: 64  TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123
           TA   DGI RRIEV A       +W VFALAN +D QL+RLIV PHYR+VGS    PDLG
Sbjct: 68  TAPGTDGIVRRIEVRAREGGQ--NWIVFALANNTDDQLDRLIVAPHYRVVGSGVLWPDLG 125

Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKD 183
             RI ++TPS G   +R  +  +DVFR+T++PG+VVTF+ E+ T  LPQ+YLWEP  YKD
Sbjct: 126 LSRIATITPSIGDLPERQESPTADVFRVTLDPGSVVTFVAELRTDKLPQLYLWEPEAYKD 185

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243
            VNSFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K++
Sbjct: 186 KVNSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVL 245

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
           ++ +    +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +  +  L  ++ + 
Sbjct: 246 DMSNNAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLFFLGSLVAVALFD 305

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P V + IARI+L  I +     I+Y    G++RAVLLIP W L+ +W     M +  ++ 
Sbjct: 306 PAVASGIARISLLLIAVVGFALIVYLSSHGFDRAVLLIPTWFLLTVWVGAASMTVAGQVT 365

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           NDI+ PAL+GGLVLIV+LIGFTV+QH  A G  + GI SD ER++LA+ GSGD++WDWD+
Sbjct: 366 NDIVGPALLGGLVLIVMLIGFTVMQHAFAGGGATTGIVSDVERRALALAGSGDLIWDWDV 425

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             D+V T+P+  ++LGL  G++ GP   WL  +H  D+D FR  LDS +  RRGRL  +F
Sbjct: 426 SADKVFTSPETESLLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDF 485

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R+R  D  F W  ++ RP+  S+G++ R +G   D+TE K + E +L ++  DNLTG+PN
Sbjct: 486 RLRTPDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNAEERLLHDSVHDNLTGLPN 545

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+ F+DRL  + + + T   LRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +L
Sbjct: 546 RKLFIDRLAAVANFAKTMPALRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRIL 605

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           K  D LARL+G++FG+IL+SE +  +I  FA  +RK+I  PI   EREI +TASIG A  
Sbjct: 606 KPHDTLARLAGDQFGLILLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALS 665

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721
                 S +++K+AELAMYH+K  GG+ ++ ++ +     +DR+ ++ +L  ++E  E+ 
Sbjct: 666 DPQTQLSEDIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLTLESELRRSIERQEIT 725

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           ++Y PI+RL D  I G EAL +WDHPK G +S SEF+ IAEE+ +I  +  F+L++ AR 
Sbjct: 726 ILYQPIVRLEDRSIAGFEALARWDHPKLGRMSPSEFITIAEEIGLIVDLGTFVLDQTARQ 785

Query: 782 IISWRDQ-ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  W+       PIF  +N++S+ LL ++L   ++++++++  +   +K+  +ES+VM N
Sbjct: 786 LSVWQRATRLREPIFASVNVSSRQLLRHDLIHDIRSVLARSSVARGSLKIELTESLVMEN 845

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AIL 899
           PE +  +L R+R++G+ L++DDFGT  S L+YL   PFDT+K + S +  +       IL
Sbjct: 846 PEHAAQMLARIRELGVGLSIDDFGTGHSSLAYLQRFPFDTLKIDQSFVRTTARGTRPVIL 905

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +SII +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ ++LL E 
Sbjct: 906 KSIIALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGYAFGEPMDADAAMRLLTEE 962


>gi|298293032|ref|YP_003694971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Starkeya novella DSM
           506]
 gi|296929543|gb|ADH90352.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Starkeya novella DSM
           506]
          Length = 1084

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/937 (41%), Positives = 583/937 (62%), Gaps = 8/937 (0%)

Query: 26  VSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHR 85
              + A+E + I     V+DL        ++ +  QV T    DGI RRIEV + +    
Sbjct: 41  APKAMALEAVAIRLEALVVDLAPAVERRTSETDRIQVSTVPGADGIVRRIEVRSVAPGPN 100

Query: 86  GD-WAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNS 144
           G  WA+FALAN +D Q++RLIV PHYR+VGS  F PDLG+RRI++VT S+GF  +R    
Sbjct: 101 GSKWAIFALANNTDEQVDRLIVAPHYRMVGSGVFWPDLGNRRILNVTASQGFRPERQNAP 160

Query: 145 DSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAI 204
           D+DVF IT++PG  VT + E+    LPQ+YLWEP  YKD VNSFTLY GI+IG+A LLA+
Sbjct: 161 DADVFLITLDPGTTVTLVAELGDGGLPQLYLWEPEAYKDKVNSFTLYNGIVIGIAGLLAL 220

Query: 205 FLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSS 264
           FLTI ++V  S+M     A+AW VLGYI +DFGF SK+  +       WRA  E  L+++
Sbjct: 221 FLTILFVVKGSAMFPAAAALAWAVLGYIGLDFGFWSKVFGISPLAQQFWRAAGEAILAAT 280

Query: 265 LIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
           L++FLF YL+ NRWH +  ++T   +  +A +  ++   P   A IAR +L  + L    
Sbjct: 281 LVVFLFAYLNLNRWHVRYAHVTAGWLVFLAAIVGLALLDPSAAAGIARPSLLVVSLMGFG 340

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
            +++  +  Y+RAVL+IP   L+ +W I   MA++ R+ ND++ PAL+GGLVLIV+LIGF
Sbjct: 341 VVMWLALHRYDRAVLIIPTLFLLVVWVITAGMAVSGRIGNDLVAPALLGGLVLIVMLIGF 400

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           TV+QH  A      G   + ER++LAV GSGDIVWDWD+  DR+  +P+   +LGL  G+
Sbjct: 401 TVMQHAFAGIGSVAGSAQELERRALAVAGSGDIVWDWDVDTDRIHVSPEAEHMLGLKQGT 460

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +      WL  IH  DRD FR  LD  +  RRGR+  +FR+RA D  + W  +R RP+  
Sbjct: 461 LETEAAGWLDIIHPGDRDRFRATLDGLLDQRRGRIDQDFRLRAHDGHYLWFNLRARPVVG 520

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++G+++R IG  +D+T+ + + E +L +A  DNLTG+PNR+ FLDRL+    LS TD+ +
Sbjct: 521 TDGEVVRCIGTLSDVTDSRTAEERMLHDAVHDNLTGLPNRELFLDRLSAANGLSRTDEQI 580

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           RPTVM+ID+D++K++N  LG+  GD +L+++ RR+  L K  D LARL  + F +IL+SE
Sbjct: 581 RPTVMLIDLDRFKQVNASLGMPAGDSILLTVARRLMRLAKQQDTLARLGSDHFALILLSE 640

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +I  FA  +R+++  PI   +REI +TASIG       K   +EMLK+AELAMY A
Sbjct: 641 RDPERITAFADTLRRTLRAPITFGDREIFITASIGLLLADGQKRAPTEMLKDAELAMYFA 700

Query: 685 KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  GG+ +E FR S      DR+ ++ DL  A+E +E+ +VY P++ L    + G EA++
Sbjct: 701 KRVGGDRIEVFRPSMRTHKLDRLTMEADLRQALERNEISVVYQPVVDLSTRAVAGFEAMV 760

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +   +F+ +AE+  +I  + LF+L+  AR +  W+      PIF+ +NI+S
Sbjct: 761 RWQHPSLGTLGPDDFLGLAEDTGLIVDLGLFVLDTAARQLGVWQRSLRGEPIFVCVNISS 820

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + +L ++L + ++A++++ + +P  +KL  +ES+ M NPE +  +L R+R++G  LTLDD
Sbjct: 821 RHMLRHDLLQDLKAVLARNVVAPGTLKLELAESLAMENPEYASQILLRMRELGAGLTLDD 880

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT-----GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           FGT  S L+YL   PFD++K + + M      G+  +R  ILR+II MA ++   I+A+ 
Sbjct: 881 FGTGYSSLAYLQRFPFDSIKVDRTFMKALGRSGNKAQRPIILRTIINMAHDLGMDIVAEG 940

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I  E     L ++GC Y Q      P+      K L+
Sbjct: 941 IETEQVAAALAKLGCRYGQGRLYGEPMTAEDARKRLQ 977


>gi|91978806|ref|YP_571465.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91685262|gb|ABE41564.1| GGDEF domain [Rhodopseudomonas palustris BisB5]
          Length = 958

 Score =  908 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/954 (42%), Positives = 613/954 (64%), Gaps = 6/954 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A L L L L+ +   + A++ +++ S    +DLT +     +  +  QV TA 
Sbjct: 1   MRLIRCLALLALGLMLIAVAPQAHALDAVSVRSDAPAIDLTGVLEHQRSDTDRIQVSTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RRIEV A        W VFALAN +D QL+RLIVVPHYR+V S  F PDLG  R
Sbjct: 61  GNDGIVRRIEVRAREGGQ--HWVVFALANNTDDQLDRLIVVPHYRMVASGLFWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   +R  ++ +D+FR+T++PG+V+TF+ E+ T  LPQ+YLWEP  YKD VN
Sbjct: 119 IATITPSTGDRPERQDSTTADIFRVTLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI IDFGF SK+ ++ 
Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWSKVFDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           +G   IWRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 AGAERIWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IAR++L  I       I+Y    G++RAVLLIP W L+ IW I   M +   + NDI
Sbjct: 299 ASGIARMSLVLIAFAGFTLIVYLSTHGFDRAVLLIPTWFLLVIWVIASGMTVAGSVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A    + G+ SD ER++LA++GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGSGATGGVVSDVERRALALIGSGDLIWDWDVSAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+   +LGL  G++ G    WL  +H  D+D FR  LDS +  RRGRL   FR+R
Sbjct: 419 KVFTSPETEALLGLKRGALEGSAATWLEVLHPLDQDRFRAALDSVLDQRRGRLTQHFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  ++G++ R +G   D+TE K + E +L +A  DNLTG+PNR+ 
Sbjct: 479 TPDGHFMWFALKARPVVGADGEVTRVVGTLTDVTEAKNAEERMLHDAVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  + + + T  NLRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 539 FMDRLGAVANFAKTMPNLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LAR++G++FG+IL+SE +  KI  FA  +RK+I  PI   +REI +TASIG A     
Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              S E++K+AELAMYH+K  GG+ ++ ++ +      DR+ ++ +L  A+E  E+ ++Y
Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERQEITILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  + G EAL +WDHPK G ++  EF+ IAEE+ +I  + +F++++ A+ +  
Sbjct: 719 QPIVRLEDRSVAGFEALARWDHPKLGRMAPGEFISIAEEIGLIVELGMFVMDQTAKQLAI 778

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +NI+S+ LL ++L   ++ ++S++  +   +KL  +ES+VM NPE 
Sbjct: 779 WQRAMRSREPIFASVNISSRQLLRHDLIHDVRTVLSRSSIARGTLKLELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++G  L+LDDFGT  S L+YL   PFDT+K + S +  ++      IL+SI
Sbjct: 839 AAQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ ++LL E 
Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMRLLTEE 952


>gi|85714424|ref|ZP_01045412.1| multi-sensor diguanylate cyclase/phophodiesterase [Nitrobacter sp.
           Nb-311A]
 gi|85698871|gb|EAQ36740.1| multi-sensor diguanylate cyclase/phophodiesterase [Nitrobacter sp.
           Nb-311A]
          Length = 985

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/956 (42%), Positives = 627/956 (65%), Gaps = 6/956 (0%)

Query: 5   NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64
            +L +    A+L L   +    SP+ A++ +++ S    +DLT+I     +  +  QV T
Sbjct: 26  MTLHAVRWLAWLTLAFMIFVAASPARAVDAVSVRSDAPAIDLTAILDHQHSDSDRIQVST 85

Query: 65  AADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124
           A   DGI RR+EV A       +W VFALAN +D QL+RLIV PHYRLV S    PDLG 
Sbjct: 86  APGTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRLVSSGLLWPDLGQ 143

Query: 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDT 184
            RI ++TPS G   +R  ++ +DVFRIT++PGAV+TF+ME+ T  LPQ+YLWEP+ YKD 
Sbjct: 144 SRIATITPSTGDRPERQESATADVFRITLDPGAVITFVMELRTDKLPQLYLWEPDAYKDK 203

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
           +NSFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K+++
Sbjct: 204 INSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLD 263

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
           +P+G   +WRA  E  L+++L++FLF YL+ NRWH +  +IT   +A +  L  ++ + P
Sbjct: 264 MPAGAERVWRASGEAILAATLLVFLFAYLNLNRWHVRYAHITLGWLAFLGSLVALALFDP 323

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
            V + IAR++LA I ++    I+Y  + G++RAVLLIP W L+ +W     MAI   + N
Sbjct: 324 AVASGIARMSLALIAVFGFGLIVYLAVHGFDRAVLLIPTWFLLVVWVAAAGMAIEGEVIN 383

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           DI+ PAL+GGLVLIV+LIGFTV+QH  A G  + G+ SD ER++LA+ G+GD+VWDWD+ 
Sbjct: 384 DIVGPALLGGLVLIVMLIGFTVMQHAFAGGGGASGVVSDIERRALALTGAGDLVWDWDVS 443

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D+V T+P+  ++LGL  G++ GP   WL  +H  D+D FR  LDS +  RRGRL  ++R
Sbjct: 444 ADKVFTSPETESLLGLKRGTLEGPAAAWLEVLHPLDQDRFRAALDSVLEQRRGRLVQDYR 503

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +R +D  F W  ++ RP+  S+G++ R +G   D+T+ +K+ E +L ++  DNLTG+PNR
Sbjct: 504 LRTSDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTDTRKAEERMLHDSVHDNLTGLPNR 563

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F+DRL  +   + T  +LRPT+MVID+D++K++ND +G+AVGD +L++L RR+  +LK
Sbjct: 564 KLFIDRLNAVATFAKTMPSLRPTLMVIDLDRFKQVNDSVGVAVGDSILLTLARRLTRILK 623

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D LAR++G++FG+IL+SE +  +I  FA  +RK+I  PI   +REI +TASIG A   
Sbjct: 624 PQDTLARIAGDQFGLILMSEQDPPRITAFAETIRKTIRAPITFNDREIFLTASIGLALSD 683

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
                + E++K+AELAMYH+K  GG+ ++ ++ +     +DR+ ++ DL  A+E  EL +
Sbjct: 684 PQTQLTQEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLSLEADLRRAIERRELAI 743

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           +Y PI+RL D  I G EAL +WDHPK G ++  EF+ IAEE  +I  +  F++++ AR +
Sbjct: 744 LYQPIVRLEDRSIAGFEALARWDHPKLGRMAPDEFITIAEEAGLIVDLGTFVMDQTARQL 803

Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             W+      PPIF  +N++S+ LL ++L   +++++S++  +   +KL  +ES+VM NP
Sbjct: 804 AVWQRAIRSQPPIFASVNVSSRQLLRHDLIHDIRSVLSRSSIARGTLKLELTESLVMENP 863

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILR 900
           E +  +L R+R++G+ L+LDDFGT  S LSYL   PFDT+K + S +  +T      IL+
Sbjct: 864 EHAAQMLQRIRELGVKLSLDDFGTGYSSLSYLQRFPFDTIKIDQSFVRTTTHGTRPVILK 923

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           SII +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ ++LL + 
Sbjct: 924 SIIALAHDLSMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADATMRLLAQE 979


>gi|148258155|ref|YP_001242740.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410328|gb|ABQ38834.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Bradyrhizobium sp. BTAi1]
          Length = 958

 Score =  907 bits (2345), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/954 (42%), Positives = 615/954 (64%), Gaps = 6/954 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A L L L +    +P+ A++ +++ S    +DLT I     ++ +  QV TA 
Sbjct: 1   MRLIRCLASLALGLVMCGAAAPAQAVDAVSVRSDAPAIDLTGILDHQRSENDRIQVSTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RRIEV A        W VFALAN +D QL+RLIV PHYR+VGS  F PDLG  R
Sbjct: 61  GTDGIVRRIEVRAREGGQ--HWIVFALANNTDDQLDRLIVAPHYRVVGSGVFWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   +R  +  +DVFR+T++PG+VVTF+ E+ T  LPQ+YLWEP  YKD VN
Sbjct: 119 IATITPSIGDLPERQESPTADVFRVTLDPGSVVTFVAELRTDKLPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K++++ 
Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           +    +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +  +  L  ++ + P V
Sbjct: 239 NNAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLFFLGSLVAVALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IAR++L  I +     I+Y    G++RAVLLIP W L+ +W     M +  ++ NDI
Sbjct: 299 ASGIARMSLLLIAVLGFALIVYLSSHGFDRAVLLIPTWFLLAVWVGAAGMTVAGQVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A G  S GI SD ER++LA+ GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGGASTGIVSDVERRALALAGSGDLIWDWDVSAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+  ++LGL  G++ GP   WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 419 KVFTSPETESLLGLKRGTLEGPAAKWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  S+G++ R +G   D+TE K + E +L ++  DNLTG+PNR+ 
Sbjct: 479 TPDGHFMWFALKARPVVGSDGEVSRVVGTLTDVTEFKNAEERLLHDSVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  + + + +   LRPT+MVID+D++K++ND +GIAVGD +L++L RR+   LK  
Sbjct: 539 FIDRLAAVANFAKSMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRTLKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LARL+G++FG+IL+SE +  +I  FA  +RK+I  PI   EREI +TASIG A     
Sbjct: 599 DTLARLAGDQFGLILLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALSDPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724
              S +++K+AELAMYH+K  GG+ ++ ++ +     +DR+ ++ +L  ++E  E+ ++Y
Sbjct: 659 VQLSEDIIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLTLESELRRSIERQEITILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  I G EAL +WDHPK G +S +EF+ IAEE+ +I  +  F+L++ AR +  
Sbjct: 719 QPIVRLEDRSIAGFEALARWDHPKLGRMSPNEFITIAEEIGLIVDLGTFVLDQTARQLSV 778

Query: 785 WRDQ-ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +N++S+ LL ++L   ++++++++  +   +K+  +ES+VM NPE 
Sbjct: 779 WQRATRLREPIFASVNVSSRQLLRHDLIHDIRSVLARSSVARGSLKIELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++G+ L++DDFGT  S L+YL   PFDT+K + S +  +       IL+SI
Sbjct: 839 AAQMLTRIRELGVGLSIDDFGTGHSSLAYLQRFPFDTLKIDQSFVRTTARGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ ++LL E 
Sbjct: 899 IALAHDLGMDVVAEGAESDSDAVELYQLGCEYAQGYVFGEPMDADAAMRLLTEE 952


>gi|115522696|ref|YP_779607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115516643|gb|ABJ04627.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 958

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/953 (42%), Positives = 618/953 (64%), Gaps = 6/953 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A L L L ++   SP++A++ +++ S    +DLT++     ++ +  QV TA 
Sbjct: 1   MRLIRCLALLALGLMMVAAGSPAWAVDAVSVRSDAPAIDLTAVLDHQRSEADRIQVSTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RR+EV A       +W VFALAN +D QL+RLIV PHYR+V S  F PDLG  R
Sbjct: 61  GTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRIVSSGLFWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   +R  +  +D+FR+T++PGAV+TF+ E+ T  LPQ+YLWEP+ YKD VN
Sbjct: 119 IATLTPSTGDRPERQESPTADIFRVTLDPGAVITFVAELRTDKLPQLYLWEPDAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K++++ 
Sbjct: 179 SFTLYQGIVIGISGLLALVLTILFVVKGSVMFPAAAALAWAVLVYIGVDFGFWGKVLDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           SG   +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 SGAERVWRAAGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IAR++L  I       I+Y    G++RAVLLIP W L+ +W +   M +   + NDI
Sbjct: 299 ASGIARMSLVLIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A G    G+ SD ER++LA+ GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGGGAPTGVVSDVERRALALTGSGDLIWDWDVAAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+  ++LGL  G++ G    WL  +H  D+D FR  LDS +  RRGRL  +FR+R
Sbjct: 419 KVFTSPETESLLGLKRGTLEGSAARWLEVLHPLDQDRFRAALDSVLDQRRGRLAQDFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  + W  ++ RP+  S+G++ R +G   D+TE K + E +L ++  DNLTG+PNR+ 
Sbjct: 479 TPDGHYMWFALKARPVVGSDGEVARVVGTLTDVTEFKNAEERMLHDSVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  +   S T  NLRPTVMVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 539 FIDRLNAVATFSKTMPNLRPTVMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LARL+G++F +IL+SE +S +I  FA  +RK+I  PI   EREI +TASIG A     
Sbjct: 599 DTLARLAGDQFALILLSEQDSARITAFAETIRKTIRAPIAFNEREIFLTASIGLALADPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              + E++K+AELAMYH+K  GG+ ++ ++ +      DR+ ++ +L  A+E SEL ++Y
Sbjct: 659 AQLTDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKTDRLTLESELRRAIERSELTILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  + G EAL++WDHPK G +S  EF+ IAEE  +I  +  F+L++ A+ +  
Sbjct: 719 QPIVRLEDRAVSGFEALVRWDHPKLGRMSPVEFISIAEETGLIIDLGTFVLDQTAKQLSV 778

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +N++S+ LL ++L   +++++S+   +   +KL  +ES+VM NPE 
Sbjct: 779 WQRAMRSREPIFASVNVSSRQLLRHDLLHDIRSVLSRNSVARGTLKLELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++GI L+LDDFGT  S L+YL   PFDT+K + S +  ++      IL+SI
Sbjct: 839 AAQMLQRIRELGIGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I +A ++   ++A+    + D  EL ++GC++ Q      P+  ++ ++LL E
Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEFAQGFAFGEPMDADAAMRLLTE 951


>gi|222147812|ref|YP_002548769.1| hypothetical protein Avi_1072 [Agrobacterium vitis S4]
 gi|221734800|gb|ACM35763.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 985

 Score =  905 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/936 (53%), Positives = 684/936 (73%), Gaps = 2/936 (0%)

Query: 30  FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89
            A EP+ IS  D  LDLT+ T I++NQGE FQV TAA  DGI RRIEV ASS +H+GDWA
Sbjct: 50  HAAEPVKISRDDTALDLTATTEIHLNQGEAFQVSTAAGSDGIRRRIEVRASSAQHQGDWA 109

Query: 90  VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149
           VFALAN SD QLER+IV PHYRLV S  F PDLGS+RIIS+TPSEGFSLDR+P+ D+DVF
Sbjct: 110 VFALANVSDEQLERVIVAPHYRLVNSKVFWPDLGSQRIISITPSEGFSLDRVPSDDADVF 169

Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209
           RIT+NPGAVVTF+ E++TPNLPQIYLWEP+ YKDT+NSFTLYRGI++G++ LLA+FLTI 
Sbjct: 170 RITLNPGAVVTFVAELATPNLPQIYLWEPDAYKDTINSFTLYRGIVLGISGLLAVFLTIL 229

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
           ++V  +SML    ++AW VL YI +DFGFL KL+++ +    IWRA +E+ L+S  +IFL
Sbjct: 230 FVVRGTSMLPAAASLAWAVLAYICVDFGFLGKLISITTHSEQIWRAGAEVGLASGFVIFL 289

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           F YL+ NRWH  +GY TF+ I  + +LF ++ Y P + A IAR++ A         I+Y 
Sbjct: 290 FTYLNLNRWHVNLGYATFAWILGLVLLFGVAIYDPSIAAGIARLSFALTATAGIALIVYL 349

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
           G+  Y+RA+LL+P W LI +W I  WM +T RL NDIIQPA  G LVLIV+LIGFTV+QH
Sbjct: 350 GLNRYDRAILLVPTWTLIIVWLIAGWMTVTGRLSNDIIQPAHGGALVLIVLLIGFTVMQH 409

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             A G ++QG+FSD ERQSLA+ G+GDIVWDWD+ RDRV T PDI+T LGL+ G++HG  
Sbjct: 410 AFAGGGYNQGLFSDLERQSLALTGAGDIVWDWDVARDRVVTIPDISTRLGLSHGALHGAA 469

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           RNW+P +H +DRD FR  LD  + ++RGRL +EFR+RA D  FHW+ IR RP+  +NG+I
Sbjct: 470 RNWIPSLHPDDRDRFRATLDVLLEHKRGRLNHEFRIRADDGHFHWLHIRARPVLGANGEI 529

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +R IG   D+TEQK +++ +L +A  DNLTG+PNR+ FLDRL T+L ++AT D +RPTVM
Sbjct: 530 IRCIGTIADVTEQKNTVDRLLQDAINDNLTGLPNREVFLDRLQTLLTVTATADTVRPTVM 589

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++DID + ++ND+LGI+ GD++L++LTRR+  LLK  D LARLSG++FG+ILISE +  K
Sbjct: 590 IVDIDNFGRVNDMLGISAGDNILIALTRRLRRLLKPQDTLARLSGDQFGLILISERDPAK 649

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +ADFA AM K+I +PIN   REI +TASIG  SW   + +++ +L +AELAMY AK  GG
Sbjct: 650 VADFADAMNKAIMVPINFANREINLTASIGLVSWVDQQESAAGLLSDAELAMYRAKRGGG 709

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N VE FR +     S+++ ++ +L  AVE  EL +VY PI+RL DEE+ G EAL++W+HP
Sbjct: 710 NKVEPFRPAFRGTVSEKLQLETELARAVERGELTMVYQPIVRLDDEELAGFEALMRWEHP 769

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G IS SEF+ +AE   +I  + +F LER A D++ W  Q    PIF+ +N++S  L++
Sbjct: 770 KRGTISPSEFIPLAESCDLIMPLGMFALERAATDLVEWEKQTGEMPIFVSVNLSSAQLIN 829

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L   +++L+S+   +P+R+KL  +ESVV+ NPE++RL+L +L+ IG+SL LDDFGT  
Sbjct: 830 NTLYTDIRSLLSRVNCNPARLKLELTESVVVENPEQARLVLEKLKDIGLSLALDDFGTGY 889

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           S LSYL   PFDT+K +  L+T ++E+R  +LRS+I MAK++   ++A+ I  E D  EL
Sbjct: 890 SSLSYLTRFPFDTLKLDRELVTDTSERRNILLRSVIGMAKDMGMDVVAEGIASEDDGDEL 949

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +MGC Y Q     +P+G  ++++LLK++    K  
Sbjct: 950 AQMGCHYGQSFLYGAPVGPEAVMRLLKDQQQRAKRA 985


>gi|86751593|ref|YP_488089.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86574621|gb|ABD09178.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 958

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/954 (41%), Positives = 612/954 (64%), Gaps = 6/954 (0%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R     A L L L ++     + A++ +++ S    +DLT +     +  +  Q+ TA 
Sbjct: 1   MRLTRCLALLALGLMMIAAAPQAHALDAVSVRSDAPAIDLTGVLDHQRSDTDRIQISTAP 60

Query: 67  DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
             DGI RR+EV A       +W VFALAN +D QL+RLIV PHYR+V S  F PDLG  R
Sbjct: 61  GSDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRMVSSGLFWPDLGLSR 118

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVN 186
           I ++TPS G   +R  +  +D+FR+T++PG+V+TF+ E+ T  LPQ+YLWEP  YKD VN
Sbjct: 119 IATITPSTGDRPERQDSGTADIFRVTLDPGSVITFVAELRTDKLPQLYLWEPEAYKDKVN 178

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
           SFTLY GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI IDFGF SK+ ++ 
Sbjct: 179 SFTLYHGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGIDFGFWSKVFDMS 238

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           +G   +WRA  E  L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V
Sbjct: 239 AGAERVWRASGEAILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVGLALFDPAV 298

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IAR++L  I       ++Y    G++RAVLLIP W L+ IW I   MA+   + NDI
Sbjct: 299 ASGIARMSLVLIAFAGFGLVVYLSTHGFDRAVLLIPTWFLLVIWVIASGMAVAGSVTNDI 358

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PAL+GGLVLIV+LIGFTV+QH  A    + G+ SD ER++LA++GSGD++WDWD+  D
Sbjct: 359 VGPALLGGLVLIVMLIGFTVMQHAFAGSGATGGVVSDVERRALALIGSGDLIWDWDVSAD 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +V T+P+   +LGL  G++ G   +WL  +H  D+D FR  LDS +  RRGRL   FR+R
Sbjct: 419 KVFTSPETEALLGLKRGALEGSAASWLEVLHPLDQDRFRAALDSVLDQRRGRLTQHFRLR 478

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  F W  ++ RP+  ++G++ R +G   D+TE K + E +L ++  DNLTG+PNR+ 
Sbjct: 479 TPDGHFMWFALKARPVVGADGEVTRVVGTLTDVTEAKNAEERMLHDSVHDNLTGLPNRKL 538

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+DRL  + + + T   LRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +LK  
Sbjct: 539 FMDRLGAVANFAKTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQ 598

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D LAR++G++FG+IL+SE +  KI  FA  +RK+I  PI   +REI +TASIG A     
Sbjct: 599 DTLARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASIGLALSDPQ 658

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              S E++K+AELAMYH+K  GG+ ++ ++ +      DR+ ++ +L  A+E  E+ ++Y
Sbjct: 659 TQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLTLESELRRAIERQEITILY 718

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+RL D  + G EAL +WDHPK G ++ SEF+ IAEE+ +I  + LF++++ A+ +  
Sbjct: 719 QPIVRLEDRSVAGFEALARWDHPKLGRMAPSEFIAIAEEIGLIVELGLFVMDQTAKQLAI 778

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       PIF  +N++S+ LL ++L   ++ ++S++  +   +KL  +ES+VM NPE 
Sbjct: 779 WQRAMRAREPIFASVNVSSRQLLRHDLLHDIRTVLSRSSIARGTLKLELTESLVMENPEH 838

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
           +  +L R+R++G  L+LDDFGT  S L+YL   PFDT+K + S +  ++      IL+SI
Sbjct: 839 AAQMLTRIRELGTGLSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSI 898

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A ++   ++A+    + D  EL ++GC+Y Q      P+  ++ ++LL E 
Sbjct: 899 IALAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDADAAMRLLTEE 952


>gi|27376613|ref|NP_768142.1| hypothetical protein bll1502 [Bradyrhizobium japonicum USDA 110]
 gi|27349754|dbj|BAC46767.1| bll1502 [Bradyrhizobium japonicum USDA 110]
          Length = 944

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/939 (42%), Positives = 603/939 (64%), Gaps = 6/939 (0%)

Query: 21  FLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSAS 80
            +L    P+ A++ +++      +DLT +     +  +  QV TA   DGI RRIEV A 
Sbjct: 1   MILVAALPARALDAVSVRGDAPAIDLTGVLEHQRSDADRIQVSTAPGTDGIVRRIEVRAR 60

Query: 81  SIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDR 140
                 +W VFALAN +D QL+RLIV PHYR+V S    PDLG  RI ++TPS G   +R
Sbjct: 61  EGGQ--NWVVFALANNTDDQLDRLIVAPHYRIVSSGLLWPDLGLSRIATITPSTGDRPER 118

Query: 141 IPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVAS 200
             +  +DVFR+T++PGAV+TF+ E+ T  LPQ+YLWEP  YKD VNSFTLY+GI+IG++ 
Sbjct: 119 QESPTADVFRVTLDPGAVITFVAELRTDKLPQLYLWEPEAYKDKVNSFTLYQGIVIGISG 178

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
           LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K++++ +    IWRA  E  
Sbjct: 179 LLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLDMSNNAERIWRAAGEAI 238

Query: 261 LSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL 320
           L+++L++FLF YL+ +RWH +  +IT   +A +  L  ++ + P V + IARI+L  I  
Sbjct: 239 LAATLLVFLFAYLNLSRWHVRYSHITVGWLAFLGSLVALALFDPAVASGIARISLVLIAF 298

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
                I+Y    G++RAVLLIP W L+ +W +   M +   + NDI+ PAL+GGLVLIV+
Sbjct: 299 AGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVAAGMTVAGSVTNDIVGPALLGGLVLIVM 358

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           LIGFTV+QH  A G  + G+ SD ER++LA+ GSGD++WDWD+  D+V T+P+   +LGL
Sbjct: 359 LIGFTVMQHAFAGGGATTGVVSDIERRALALAGSGDLIWDWDVSADKVFTSPETEALLGL 418

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             G++ GP  +WL  +H  D+D FR  LDS +  RRGRL  +FR+R  D  F W  ++ R
Sbjct: 419 KRGTLEGPAASWLEVLHPLDQDRFRAALDSVLDQRRGRLVQDFRLRTPDGHFMWFALKAR 478

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+  S+G++ R +G   D+TE + + E +L ++  DNLTG+PNR+ F+DRL  +   + T
Sbjct: 479 PVVGSDGEVSRVVGTLTDVTELRNAEERLLHDSVHDNLTGLPNRKLFMDRLGAVAHFAKT 538

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              LRPT+MVID+D++K++ND +GIAVGD +L++L RR+  +LK  D LARL+G++FG+I
Sbjct: 539 MPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLTRILKPQDTLARLAGDQFGLI 598

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+SE +  +I  FA  +RK+I  PI   EREI +TASIG A        + E++K+AELA
Sbjct: 599 LLSEQDPARITAFAETIRKTIRAPIAFNEREIFLTASIGLALSDPQTQLTDEIIKDAELA 658

Query: 681 MYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MYH+K  GG+ ++ ++ +      DR+ ++ +L  A+E  EL ++Y PI+RL D  + G 
Sbjct: 659 MYHSKRIGGDRIDVYKPAMRARKTDRLTLESELRRAIERQELTILYQPIVRLEDRSVAGF 718

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFIL 797
           EAL +WDHPK G ++ SEF+ IAEE  +I  + +F+L++ A+ +  W+       PIF  
Sbjct: 719 EALARWDHPKLGRMAPSEFITIAEETGLIVDLGMFVLDQTAKQLSIWQRAMRSREPIFAS 778

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++S+ LL ++L   ++ ++S++  +   +KL  +ES+VM NPE +  +L R+R++G  
Sbjct: 779 VNVSSRQLLRHDLIHDIRTVLSRSSVARGTLKLELTESLVMENPEHAAQMLTRIRELGTG 838

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAK 916
           L+LDDFGT  S L+YL   PFDT+K + S +  +       IL+SII +A ++   ++A+
Sbjct: 839 LSLDDFGTGHSSLAYLQRFPFDTIKIDQSFVRTTNRGTRPVILKSIIALAHDLGMDVVAE 898

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + D  EL +MGC+Y Q      P+  ++ ++LL E
Sbjct: 899 GAETDSDAVELYQMGCEYAQGFAFGEPMDADAAMRLLTE 937


>gi|328545002|ref|YP_004305111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC-like protein
           [polymorphum gilvum SL003B-26A1]
 gi|326414744|gb|ADZ71807.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 979

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/932 (41%), Positives = 610/932 (65%), Gaps = 6/932 (0%)

Query: 29  SFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDW 88
           ++A+EPI +      L+LT +   + + G   QV TA   DGI RRIEV +       +W
Sbjct: 42  AYALEPIQVPLDVDALELTDVVEFHRDAGSRLQVSTAPGADGIVRRIEVMSRD-GENTNW 100

Query: 89  AVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDV 148
           AVFAL N+SD Q++RLIV P ++LVGS    PDLGS R+ S+TPS+G + +R  + ++DV
Sbjct: 101 AVFALTNSSDEQIDRLIVAPFFQLVGSRLIWPDLGSSRVASITPSQGIAPERQKSLEADV 160

Query: 149 FRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTI 208
           F IT++PGA+VTF+ E++TP LPQ+ +WEP+ YK+TVN++TLYRGII+G++ LLA+FLTI
Sbjct: 161 FLITLDPGAIVTFVAELTTPELPQLRVWEPDAYKETVNAYTLYRGIILGISGLLALFLTI 220

Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF 268
            ++V  ++M   T A+AW VL Y+ IDFGF S++ NL  GE  ++RA +E+ L++SLIIF
Sbjct: 221 LFVVKGTAMFPATAALAWAVLAYLCIDFGFWSRVFNLTQGEDQLYRASAEVMLAASLIIF 280

Query: 269 LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328
           L+ YL+ NRWH +  ++  + +  +  L  ++ + P + A IARI L  I +     +I 
Sbjct: 281 LYTYLNLNRWHIRYSHLALATLTMLLGLLGVAVWDPSIAAGIARIALGIIGVLGFVTVIV 340

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++GY+RA++LIP W L+ +W +G  M +T  L NDI+QPAL GGLVLIV+LIGFTV+Q
Sbjct: 341 LALQGYDRAIMLIPTWFLLMVWLVGAAMTVTGALANDIVQPALGGGLVLIVLLIGFTVMQ 400

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H  A G   QG+ SD ER++LA+ G+GDI+WDWD+ RDR+ T  ++  +L L  G++ GP
Sbjct: 401 HAFAGGAIVQGLISDVERRALALTGAGDIIWDWDVDRDRIYTGNEVEDLLNLRHGTLDGP 460

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R WL  +H  DRD FR  LD+ +  RRG++Q +FR+R+ D  F W  +R RP+  S+ +
Sbjct: 461 AREWLDVLHPQDRDRFRATLDAVIDQRRGKVQQDFRLRSEDGHFRWFRLRARPILGSDAE 520

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPT 567
           ++R +G   DIT+QK + E +L +A  DNLTG+ NR+ F+DRL   L  +  D    +P 
Sbjct: 521 VIRCVGTLLDITDQKTAEERMLHDAVHDNLTGLANRELFMDRLNAALARARVDAAAIKPA 580

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+++++D++K++ND +GI+ GD +L+++ RR+  LL+  D LARLSG+++G+IL+SE  +
Sbjct: 581 VLILNLDRFKQVNDGIGISAGDSILLTVARRLDRLLQPQDSLARLSGDQYGLILLSEQEA 640

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +IA  A ++RK++  PI   +RE+ +T SIGFA     + ++ E++ +AE+A+ HAK  
Sbjct: 641 DRIAQVADSLRKAVRAPITFGDREVFLTCSIGFALHDGGRQSAEELVTDAEIALNHAKRL 700

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG+  E FR        + + ++ +L  +++   L + + PI+RL D+ + G E L +W 
Sbjct: 701 GGDRQEVFRPILRPLGRNVIDLESELRKSIKEETLGVFFQPIVRLADKSVAGFEVLARWK 760

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKD 804
           HPK G IS SEF+ IAE+  +I  + L++LE+ A+ +  W+ +  MP P+F+ +N++S+ 
Sbjct: 761 HPKRGQISPSEFIPIAEQSGLINELGLYVLEKGAKQLAEWQQRLPMPQPLFVSVNMSSRQ 820

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           LL ++L   ++A++S++      +KL  +ESVVM NPE S  +L RLR +G  L+LDDFG
Sbjct: 821 LLRHDLINDVKAILSRSSIVHGTLKLELTESVVMANPEYSAKVLERLRALGAGLSLDDFG 880

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           T  S L+YL   PFDT+K + S +       R  ILRSI+ +  ++   ++A+   GE D
Sbjct: 881 TGYSSLAYLQRFPFDTIKIDQSFVRPNGRAARPVILRSIVALGHDLGMAVVAEGAEGESD 940

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             EL ++GC+Y Q  +    +       L+++
Sbjct: 941 ALELLQLGCEYAQGYYFGQAMSAEEATALIRK 972


>gi|75676935|ref|YP_319356.1| multi-sensor diguanylate cyclase/phophodiesterase [Nitrobacter
           winogradskyi Nb-255]
 gi|74421805|gb|ABA06004.1| multi-sensor diguanylate cyclase/phosphodiesterase [Nitrobacter
           winogradskyi Nb-255]
          Length = 960

 Score =  900 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/956 (43%), Positives = 625/956 (65%), Gaps = 6/956 (0%)

Query: 5   NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64
            +L      A+L L L +    SP+ A++ +++ S    +DLT+I     +  +  QV T
Sbjct: 1   MTLHLVRRLAWLTLALMIFVAASPARAVDAVSVRSDAPAIDLTAILDHQHSDSDRIQVST 60

Query: 65  AADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGS 124
           A   DGI RR+EV A       +W VFALAN +D QL+RLIV PHYRLV S    PDLG 
Sbjct: 61  APGTDGIVRRVEVRAREGGQ--NWVVFALANNTDDQLDRLIVAPHYRLVSSGLLWPDLGQ 118

Query: 125 RRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDT 184
            RI ++TPS G   +R  ++ +DVF+IT++PGAV+TF+ME+ T  LPQ+YLWEP+ YKD 
Sbjct: 119 SRIATITPSTGDRPERQESATADVFQITLDPGAVITFVMELRTDRLPQLYLWEPDAYKDK 178

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
           VNSFTLY+GI+IG++ LLA+ LTI ++V  S M     A+AW VL YI +DFGF  K+++
Sbjct: 179 VNSFTLYQGIVIGISGLLALVLTILFVVKGSIMFPAAAALAWAVLVYIGVDFGFWGKVLD 238

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
           +P+G   IWRA  E  L+++L++FLF YL+ NRWH +  +IT   +  +  L  ++ + P
Sbjct: 239 MPAGAERIWRASGEAILAATLLVFLFAYLNLNRWHVRYSHITLGWLFFLGSLVALALFDP 298

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
            V + IARI+LA I ++    I+Y  + G++RAVLLIP W L+ +W     MAI  ++ N
Sbjct: 299 AVASGIARISLALIAVFGFGLIVYLAVHGFDRAVLLIPTWFLLVVWVAAAGMAIEGKVVN 358

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           DI+ PAL+GGLVLIV+LIGFTV+QH  A G  + G+ SD ER++LA+ G+GD+VWDWD+ 
Sbjct: 359 DIVGPALLGGLVLIVMLIGFTVMQHAFAGGGGASGVVSDIERRALALTGAGDLVWDWDVS 418

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D+V T+ +  ++LGL  G++ GP   WL  +H  D+D FR  LDS +  RRGRL  +FR
Sbjct: 419 ADKVFTSLETESLLGLKRGTLEGPAAGWLEVLHPLDQDRFRAALDSVLEQRRGRLVQDFR 478

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +RA+D  F W  ++ RP+  S+G++ R +G   D+TE +K+ E +L ++  DNLTG+PNR
Sbjct: 479 LRASDGHFMWFALKARPVVGSDGEVSRVVGTLADVTETRKAEERMLHDSVHDNLTGLPNR 538

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F+DRL  +  L+ T   LRPT+MVID D++K++ND +G+AVGD +L++L RR+  +LK
Sbjct: 539 KLFIDRLNAVATLAKTMPGLRPTLMVIDFDRFKQVNDSVGVAVGDSILLTLARRLTRILK 598

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D LARLSG++FG+IL+SE +  +I  FA  +RK+I  PI   +REI +TASIG A   
Sbjct: 599 AQDTLARLSGDQFGLILMSEQDPPRITAFAETIRKTIRAPIAFNDREIFLTASIGLALSD 658

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
                S +M+K+AELAMYH+K  GG+ ++ ++ +     +DR+ ++ +L  A+E  E+ +
Sbjct: 659 PQTQLSDQMIKDAELAMYHSKRIGGDRIDVYKPAMRARKNDRLSLEAELRRAIERQEITV 718

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           +Y PI+RL D  I G EAL +WDHPK G ++  EF+ IAEE  +I  +  F++++ AR +
Sbjct: 719 LYQPIVRLQDRSIAGFEALARWDHPKLGRMAPDEFITIAEEAGLIVDLGTFVMDQTARQL 778

Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             W+      PPIF  +N++S+ LL ++L   +++++S++  +   +KL  +ES+VM NP
Sbjct: 779 AVWQRAMRSQPPIFASVNVSSRQLLRHDLIHDIRSVLSRSSIARGTLKLELTESLVMENP 838

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILR 900
           E +  +L R+R++G+ L+LDDFGT  S LSYL   P DT+K + S +  ST      IL+
Sbjct: 839 EHAAQMLQRIRELGVGLSLDDFGTGYSSLSYLQRFPLDTIKIDQSFVRTSTRGTRPVILK 898

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           SII +A ++   ++A+    + D  EL +MGC+Y Q      P+  ++ ++LL + 
Sbjct: 899 SIIALAHDLGMDVVAEGAETDSDAVELYQMGCEYAQGFAFGEPMDVDATMRLLAQE 954


>gi|217977438|ref|YP_002361585.1| diguanylate cyclase/phosphodiesterase [Methylocella silvestris BL2]
 gi|217502814|gb|ACK50223.1| diguanylate cyclase/phosphodiesterase [Methylocella silvestris BL2]
          Length = 965

 Score =  893 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/932 (41%), Positives = 594/932 (63%), Gaps = 5/932 (0%)

Query: 27  SPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRG 86
            P+ AIE + +    +V+DLT     Y + G+   V TA   DGI RRIEV A     R 
Sbjct: 27  GPANAIESVRVPLDSQVIDLTKAVESYNSDGDRLLVSTAPGSDGIVRRIEVRAREEGTRP 86

Query: 87  DWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDS 146
           +W VFAL N +  Q+ERLIV PH+RLVGS    PDLG+ RI ++T S+GF  +R  + D+
Sbjct: 87  NWIVFALTNDTSEQIERLIVAPHFRLVGSGVIWPDLGATRISAITASQGFPPEREDSEDA 146

Query: 147 DVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206
           DVFR+T++PG  +T++ E+ TPNLPQ++LWEP+ YKD + S  LY+GIIIGVA LLA+FL
Sbjct: 147 DVFRLTLDPGTTITYVAELRTPNLPQLHLWEPDAYKDRMTSLALYKGIIIGVAGLLALFL 206

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
           TI ++V  + +     A+AW VL Y+ IDFGF  +++        IWRA +E  L+++L+
Sbjct: 207 TIVFVVRGAVIFPAAAALAWTVLAYVCIDFGFWGRIIGSEGQSDRIWRAGTESILAATLL 266

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           +FLF YL+ NRWH +  ++    +  +A L  +S Y   V A +ARI++A+I       +
Sbjct: 267 VFLFAYLNLNRWHVRASHVAAIWLIFLAALVGLSVYDAPVAAGVARISIATIGAVGFVLV 326

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +Y  + GY+RAV+LIP W L+  W +G    +T  L ND++ PAL+GGLVLIV+LIGFT+
Sbjct: 327 LYLAIHGYDRAVMLIPTWFLLLAWIVGAAFTVTGALTNDLVSPALIGGLVLIVMLIGFTI 386

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q+       + G   D ER++LA  GSGDI++DWD+  DRV  +P++   LGL  G++ 
Sbjct: 387 MQNAFVGAGLAHGAVPDAERKALAFTGSGDIIFDWDVSADRVYVSPEVEAQLGLQRGALE 446

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           GP  NW   +H ++RD +R  LD+ +  RRGR+  +FR+RAAD Q  W  ++ RP+  ++
Sbjct: 447 GPASNWFDVLHQSERDRYRACLDAMLEQRRGRINQDFRLRAADGQHFWFRLKARPVIGAD 506

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+++R +G+ +DITE K + E +L +A  DNLTG+PNR+ F DRL   L L+ +D  +RP
Sbjct: 507 GEVVRIVGVLSDITEIKTAEERLLHDAVHDNLTGLPNRELFFDRLDAALSLAQSDPKIRP 566

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            VM IDID++K+IN+ +G++ GD +L+++ RR+G +LK  D LARLSG++F ++++SE+ 
Sbjct: 567 AVMSIDIDRFKQINEQVGLSAGDSILLTVARRLGRILKPQDTLARLSGDQFILLIVSESE 626

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAK 685
           + +I   A   R+  + P++  ++EI +TASIG A +         +MLK+AE+AM H K
Sbjct: 627 ADQITALANTARRVASTPVSFSDKEIPLTASIGLAFYDPQLHGKREDMLKDAEIAMRHGK 686

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             GGN +E FR +          +  DL  A++  E+ +V+ PI+RL D  + G EAL++
Sbjct: 687 RLGGNRIEVFRATMRSLRSDRFGLAADLKRALDRGEMKVVFQPIVRLEDRTVAGFEALLR 746

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIAS 802
           WDHP+ G ++  EF+ +AEE  +I  + +F ++R AR++  W+   +  PPIF+ +N++S
Sbjct: 747 WDHPRLGRLNPGEFISVAEETGVIIDLGIFAMDRAARELAVWQRALDVDPPIFVSVNVSS 806

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + LL ++L + +++++S+   +P  +KL  +ES+VM NPE +  +L R+R +G  L+LDD
Sbjct: 807 RQLLRHDLLQDVKSVLSRVEIAPGSLKLELTESLVMENPEYAAQILTRIRDLGAGLSLDD 866

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           FGT  S L+YL   PFDT+K + S +  +    R  ILRSI+ +A ++   ++A+    E
Sbjct: 867 FGTGYSSLAYLQRFPFDTIKIDRSFVRQNGNGARPVILRSIVALAHDLGMEVVAEGAEAE 926

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            D  EL ++GC++ Q      P+      KL+
Sbjct: 927 SDAIELYQLGCEFAQGFAFGHPISAAEARKLV 958


>gi|220920316|ref|YP_002495617.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylobacterium nodulans ORS 2060]
 gi|219944922|gb|ACL55314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC-like protein
           [Methylobacterium nodulans ORS 2060]
          Length = 959

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/933 (40%), Positives = 583/933 (62%), Gaps = 5/933 (0%)

Query: 26  VSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHR 85
            S + A+E + +    + +DLT     Y + G+  Q+ TA   DGI RRI V A     R
Sbjct: 20  PSAARALEAVRVGLDAQAIDLTPAIERYRSDGDLIQISTAPGKDGIVRRIAVKARETGAR 79

Query: 86  GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSD 145
            DW VFAL N +D Q++RL+V PH+RLVGS    PDLG  RI ++T S+G   +R  + D
Sbjct: 80  PDWIVFALTNDTDEQIDRLLVAPHFRLVGSGIIWPDLGGSRIAAITASQGIRPERDESPD 139

Query: 146 SDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIF 205
           +D F +T++PG  VTF+ E+ TPN+PQ+YLW+ + Y+      TLY+GIIIG+A LLA+F
Sbjct: 140 ADQFTVTLDPGTTVTFVAELRTPNVPQLYLWDQDAYRKKATGLTLYKGIIIGIAGLLALF 199

Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265
           LT+ ++V  + +     A+AW VL Y  IDFGF  ++  +      ++RA +E  L ++L
Sbjct: 200 LTVVFVVKGAIIFPAAAALAWSVLAYTCIDFGFFQRIFPVTEAAERVYRASAEAVLGATL 259

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325
           ++FLF YL+  RWH +  ++    +  +A L  ++   P V A +ARI++A++       
Sbjct: 260 LVFLFAYLNLARWHVRYSHVALLWLIFLAGLVALAVVDPPVAAGVARISIATVAGVGLLL 319

Query: 326 IIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
           ++Y     GY+RA+LLIP W+L+  W +    AIT +L ND++QPAL+GGLVLIV+LIGF
Sbjct: 320 VVYLAAHNGYDRAILLIPTWLLLTAWVVAAGFAITGQLRNDLVQPALIGGLVLIVMLIGF 379

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           TV+QH  A G     + SD ER++LA+ G+GD+V+DWD+  DRV   P+I + LGL  G+
Sbjct: 380 TVLQHAFAGGGIGTAVVSDTERRALALTGAGDVVFDWDVPGDRVFAGPEIESQLGLKRGA 439

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + GP  NWL  +H  D D +   LD+ +  RRGR+  +FR+RAA   ++W  ++ RP+  
Sbjct: 440 LEGPAANWLALLHPFDVDRYSAALDTVIEERRGRICQDFRLRAAAGPYYWFRLKARPVIG 499

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++G+++R +G   D+TE K + E +L +A  DNLTG+PNR+ F DRL   L L+A D  L
Sbjct: 500 ADGEVIRIVGTIADVTEVKIAEERLLHDAVHDNLTGLPNRELFNDRLDAALTLAAQDPRL 559

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +PTV V+DID++K++ND +G++ GD +L++L+RR+G LL+  D LAR++G+   +IL+SE
Sbjct: 560 KPTVFVLDIDRFKQVNDAIGLSAGDSILLTLSRRLGRLLRPQDTLARIAGDELAVILVSE 619

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYH 683
            +  +I  FA  +R++I  PI   +REI +T SIG     +       ++ KNAE+AM  
Sbjct: 620 RDPDRIIAFADMIRRAITTPITYADREIFLTPSIGVVLHEAGSNPKRDQIFKNAEIAMIQ 679

Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +GG+ +E +R +       R+M++ DL  A+E +E+ +++ PI+RL D  + G EAL
Sbjct: 680 AKRQGGDRIEVYRPTMRSDRGDRLMLESDLRQALERNEIKVLFQPIVRLEDRTVAGFEAL 739

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINI 800
           ++WDHPK G I    F+ IAEE  +I  + +F LER A ++ +W+      PP+F  +N+
Sbjct: 740 LRWDHPKHGRIPPQTFIPIAEESGLIVDLGVFALERTAAELAAWQQALVVEPPLFASVNV 799

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +S+ LL ++L   ++ ++++T  +P  +KL  +ES+VM NPE +  +L R+ ++G  L+L
Sbjct: 800 SSRQLLRHDLLHDVKTVLARTGVAPGSLKLELTESLVMENPEYAAQMLARIAELGAGLSL 859

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   PFDT+K + S +      R  ILRSI+ MA+ +   I+A+    
Sbjct: 860 DDFGTGYSALAYLQRFPFDTIKIDQSFVRQMANGRSVILRSIVRMAQELGLEIVAEGAET 919

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           E D + L  +GCDY Q      P+  +   +L+
Sbjct: 920 EADARALAEIGCDYAQGFAFGEPMSVHQARQLV 952


>gi|182677712|ref|YP_001831858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633595|gb|ACB94369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 950

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/943 (41%), Positives = 610/943 (64%), Gaps = 7/943 (0%)

Query: 18  LVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEV 77
           +VL+ L +  P+ A+E + +    + +DLT     Y ++G+  QV TA   DGI RRIEV
Sbjct: 1   MVLWALGLSLPAAAVEAVRVPLDAQAIDLTHSVVSYRSEGDRLQVSTAPGSDGIVRRIEV 60

Query: 78  SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137
           SA     +  W VFAL N +D Q+ERLIV PH+RLVGS    PDLG+ RI ++T S+GF+
Sbjct: 61  SAREAGTQPSWIVFALTNDTDEQIERLIVAPHFRLVGSGVIWPDLGATRISAITASQGFA 120

Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG 197
            +R  N+D+DVFR+T++PG  +T++ E+ TPNLPQIYLWEP+ YKD + S TLY+GI+IG
Sbjct: 121 PEREDNNDADVFRLTLDPGTTITYVAELRTPNLPQIYLWEPDAYKDKITSLTLYKGIVIG 180

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
           +A LLA+FLTI ++V  + +     A+AW VL Y+ IDFGF SKL +L      IWRAC+
Sbjct: 181 IAGLLALFLTIVFVVRGAVIFPAAAALAWTVLAYVCIDFGFWSKLFDLEGPAERIWRACT 240

Query: 258 EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLAS 317
           E  L+++L++FLF YL+ NRWH +  +IT   +  +  L  ++ Y   V A +ARI+LA+
Sbjct: 241 ETVLAATLLVFLFAYLNLNRWHVRASHITAIWLVFLTALVGLAIYDAPVAAGVARISLAT 300

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
           I       +IY    GY+RAV+LIP W L+  W +G    +T +L ND++ PAL+GGLVL
Sbjct: 301 IAGIGFILVIYLAAHGYDRAVMLIPTWFLLLAWIVGAAFTVTGKLTNDLVSPALIGGLVL 360

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           IV+LIGFT++Q+        Q   SD ER++LA+ G GD ++DW++  D+V   P++   
Sbjct: 361 IVMLIGFTIMQNAFTGLALGQHAVSDVERKALALSGCGDNIFDWNVPADQVYVAPEVEAH 420

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LGL  G++ GP   WL  +H  DRD ++  LD+ +  RRGR+  EFR+RA D Q+ W + 
Sbjct: 421 LGLDRGALEGPASAWLDLLHPLDRDRYQASLDTMLEQRRGRIHQEFRLRAVDGQYFWFLF 480

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + RP+   +G+++R IG   D+TE + S E +L +A  DNLTG+PN+  F DR+   L  
Sbjct: 481 KARPVVAQDGEVIRIIGTLADVTENRISQERLLHDAVHDNLTGLPNQALFFDRIDAALVF 540

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +A D  ++P+++ +DID++K +N+ +G++ GD +L+++ RR+G +LK  D LAR+SG++F
Sbjct: 541 AANDPEIQPSIISLDIDRFKTVNETIGLSAGDSILLTIARRLGRILKPQDALARISGDQF 600

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKN 676
            I+++SE++   I  FA  +++ ++ P++  EREI +TASIG A +      +  +++KN
Sbjct: 601 AILILSEHDPQAITAFANVVQRVVSTPVSFAEREIPLTASIGVALFDPYQPQSREDLVKN 660

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AE+AM+HAK  GGN +E FR S    RSDR+ ++ DL   +E  E+ + + PIIRL D  
Sbjct: 661 AEIAMHHAKRGGGNRIELFRASLRGLRSDRIALEADLRRCLERGEMKVYFQPIIRLEDRT 720

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPP 793
           + G E +++WDHP+ G ++++EF+ +AEE   I  + +F LER  R++ +W++  N  PP
Sbjct: 721 VAGFETVLRWDHPRLGRLTAAEFLPLAEETGFIVDLGIFALERTGRELATWQNALNVDPP 780

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           IF  +NI+S+ LL ++L   ++ L+++   +P  +KL  SES++M NPE +  +LGR+R+
Sbjct: 781 IFASVNISSRQLLRHDLLHDIKTLLARFHVAPGTLKLEVSESLIMENPEYAAQMLGRIRE 840

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIE 910
           +G  L+LDDFGT  S L+YL   PFDT+K + S +  + +    R  ILR+++ +A ++ 
Sbjct: 841 LGAGLSLDDFGTGYSSLAYLQRFPFDTIKIDRSFVHQNGQGQGSRSVILRAMVTLAHDLG 900

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             ++A+    E D  EL ++GC+Y Q      P+      KL+
Sbjct: 901 MDVVAEGAESESDAIELYQLGCEYAQGHAFGHPISMADARKLV 943


>gi|323136603|ref|ZP_08071684.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Methylocystis sp. ATCC
           49242]
 gi|322397920|gb|EFY00441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Methylocystis sp. ATCC
           49242]
          Length = 956

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/948 (41%), Positives = 598/948 (63%), Gaps = 5/948 (0%)

Query: 11  FEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDG 70
             + FL  +  L    +   A+E + +    R +DLT +   + +QG+  QV TA   DG
Sbjct: 2   RLQTFLTALFLLFVSATAVLAMESVRVPQGARAIDLTHVVEKHSSQGDRLQVSTAPGSDG 61

Query: 71  ISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISV 130
           I RRIEV A     R +W VFAL N +D Q+ERLIV PH+RL GS    PDLGS RI ++
Sbjct: 62  IVRRIEVGAREAGSRPNWIVFALTNDTDEQIERLIVAPHFRLQGSGVIWPDLGSTRINAI 121

Query: 131 TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTL 190
           T S+GF  +   ++D+DVFR+T++PG  VT++ E+ TPNLPQ+YLWEP  YKD V S TL
Sbjct: 122 TASQGFPPEAEDSADADVFRLTLDPGTTVTYVAELRTPNLPQLYLWEPEAYKDKVTSLTL 181

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250
           Y+GI+IG+A LLA+FLTI ++V  + +     A+AW VL Y+ IDFGF  K+    +   
Sbjct: 182 YKGIVIGIAGLLALFLTIVFVVKGAVIFPAAAALAWAVLAYVVIDFGFWDKIFGSDANTD 241

Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
            IWRA +E  LS++L++FLF YL+ NRWH +  ++    +  +A L  ++ +   V A +
Sbjct: 242 RIWRAGAETVLSATLVVFLFAYLNLNRWHVRAWHVAALWLLILADLIGLAMFDAPVAAGV 301

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
           ARI+LA+I +     ++Y    G+ERA++LIP W L+ +W      A+   + ND++ PA
Sbjct: 302 ARISLATIAVVGFVLVLYLASHGFERAIMLIPTWFLLVVWVATAGFAVAGWMTNDLVSPA 361

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           LVGGLVLIV+LIGFTV+Q+  ATG  S G  SD ER++LA+ G+ +IV+DWD+  D +  
Sbjct: 362 LVGGLVLIVMLIGFTVMQNAFATGGLSHGAISDVERKALAMTGANEIVFDWDVPSDHIYV 421

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           +P+    LGL  G + G   +WL  +H  ++D +R  LD+ +  RRGR+  EFR+RAAD 
Sbjct: 422 SPEAEAALGLDRGGLEGAASSWLDLLHPFEQDRYRACLDALLEQRRGRINQEFRLRAADG 481

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            +    +R RP+   +G+++R +G   D+T+++ + E +L +A  DNLTG+PNR+ F DR
Sbjct: 482 HYLCYRLRARPVVGPDGEVIRVVGTLTDVTDERNAQERLLHDAVHDNLTGLPNRELFFDR 541

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L  +  D ++RPTV+VIDID++K+IN+ +GIA+GD +L+++  R+  LL+  D LA
Sbjct: 542 LEAALVFARMDKDVRPTVLVIDIDRFKQINEQVGIAMGDSILLTVAHRLTRLLQPQDTLA 601

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KIT 669
           RL+G+ F IIL+SE ++  +   A ++R+S+A P+   +REI + ASIG A +       
Sbjct: 602 RLNGDAFAIILVSETHADHVITLADSVRRSLATPVRFTDREIALFASIGIALYDQQMHPG 661

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           + +ML++AE+AM HAK  GGN +E FR  + + RSDR+ ++ D+  A+E  E+ + + PI
Sbjct: 662 ADDMLEDAEIAMRHAKRSGGNRIEVFRPAMRAQRSDRLTLEADMRRALERGEVKVFFQPI 721

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +RL D  I G EAL++WDHP+ G +  S+F+ IAE+  +I    L  LER AR++ +W+ 
Sbjct: 722 VRLEDRTIAGFEALLRWDHPRLGRLEPSQFIPIAEQTGLIIDFGLLALERTARELAAWQR 781

Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                PPIF  +N++S+ LL ++L   +++++ +       +KL  +ES+VM NPE +  
Sbjct: 782 ALAVDPPIFASVNVSSRQLLRHDLLRDVKSVLMRHDIVKGSLKLELTESLVMENPEYAAQ 841

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPM 905
           +L R++++G  L+LDDFGT  S L+YL   PFDT+K + S +  S +     ILRSII +
Sbjct: 842 MLARIKELGAGLSLDDFGTGYSSLAYLQRFPFDTIKIDRSFVKQSGKGARPVILRSIIAL 901

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+++   ++A+    E D  EL ++GC Y Q      P+      +L+
Sbjct: 902 AQDLGMDVVAEGAETESDAIELYQLGCGYAQGYAFGRPISSQEARRLV 949


>gi|307941653|ref|ZP_07657008.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307775261|gb|EFO34467.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 931

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/923 (41%), Positives = 593/923 (64%), Gaps = 6/923 (0%)

Query: 38  SSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTS 97
                 L+LT    +Y       QV TA   DGI RRIEV +        W VFALANTS
Sbjct: 2   PPDIDALELTDSVDLYREAVPRLQVSTAPGADGIVRRIEVPSRD-GSSRSWTVFALANTS 60

Query: 98  DSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGA 157
           D Q++RL+V P +RLVGS  F P+LGS RI+++TPS+G +  R  + ++DVF IT++PGA
Sbjct: 61  DEQVDRLLVAPFFRLVGSKLFWPELGSSRIVAITPSQGLAPVREHSLEADVFLITLDPGA 120

Query: 158 VVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSM 217
           +VTF+ E+++P+LPQ+ LW+P  YK+T+N +TLYRGII+G++ LLA+FLTI ++V  + M
Sbjct: 121 IVTFVAELNSPDLPQLRLWKPEVYKETINGYTLYRGIILGISGLLALFLTILFVVKGTVM 180

Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNR 277
              T A+AW VL Y+ IDFGF S L  L  G   ++RA +E+ L+SSLIIFL+ YL+ NR
Sbjct: 181 FPATAALAWSVLAYLCIDFGFWSLLFKLEHGGEPLYRASAEVMLTSSLIIFLYAYLNLNR 240

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           W+    ++  + +  +  L  ++ + P V A IAR+ +  I +     I+    +GY+RA
Sbjct: 241 WNIHYSHLALTSLVLLLGLLGVAVWDPSVAAGIARLAMGIIGILGFVTILVLAWQGYDRA 300

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
           +LLIP+W L+  W IG  M +T  L NDI+QPAL GGLVLIV+LIGFTV+QH  A G  +
Sbjct: 301 ILLIPSWFLLLAWLIGAAMTVTGTLANDIVQPALGGGLVLIVLLIGFTVMQHAFAGGAIA 360

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           QG+ SD ER++LA+ G+GDI+WDWDI RDR+ T  ++  +L L  G++ GP R+WL  +H
Sbjct: 361 QGLISDVERRALALTGAGDIIWDWDIDRDRIFTGNEVEDLLNLRRGTLEGPARDWLDVLH 420

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DRD FR  LD+ +  R G++   FR+R+ D  F W  +R RP+  ++G+++R +G   
Sbjct: 421 PQDRDRFRATLDAVIDKRGGKIVQTFRLRSEDGHFRWFRLRARPIVGADGEVIRCVGTLL 480

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVMVIDIDKY 576
           D+TE++ + E +L +A  DNLTG+PNR+ F+DRL T  +  +A    ++PTV+++++D++
Sbjct: 481 DVTEERTAEERLLHDAVHDNLTGLPNRELFMDRLRTAVIQTNAEQSGVKPTVIMLNLDRF 540

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND +GI+ GD +L+++ RR+G L+   D LARL+G+ +G++++SE    ++   A +
Sbjct: 541 KQVNDSIGISAGDSILLTVARRLGRLIGRQDTLARLNGDLYGLVVLSEKEPDRVVALADS 600

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +RK++  PI   EREI +T S G A +   K    +++ NAE+A+ HA+  GG+  E FR
Sbjct: 601 LRKAVRSPITFGEREIFLTCSAGIALFEGGKQDVEDLMANAEIALNHARRLGGDRQEVFR 660

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   + V ++ DL  A++   L + Y PI+RL ++ + G E L +W HPK G IS 
Sbjct: 661 PILRPLGKNVVDLEADLREAIKKENLGVFYQPIVRLENQSVAGFEVLARWKHPKRGQISP 720

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEG 813
           SEF+ IAE+  +I  + ++MLE+ A  +  W+ +     P+F+ +N++S+ LL+++L   
Sbjct: 721 SEFIPIAEQSGLIHELGMYMLEKGAHQLAYWQREMKTSTPLFVSVNLSSRQLLNHDLIND 780

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A++S++  +P  +KL  +ES+VM NPE S  +L RLR +G  L++DDFGT  S LSYL
Sbjct: 781 VKAVLSRSSVAPGTLKLELTESLVMSNPEYSVKVLERLRGLGAGLSIDDFGTGHSSLSYL 840

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAI-LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              PFDT+K + S +  S +   +I LR+I+ M  ++  +I+A+    E +  EL ++GC
Sbjct: 841 QRFPFDTLKIDQSFVKPSADSSRSILLRTIVAMGHDLGMSIVAEGAESEDEALELYQLGC 900

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           +Y Q       +  +   K L++
Sbjct: 901 EYAQGFFFGQAVSSDEATKTLRK 923


>gi|170740577|ref|YP_001769232.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168194851|gb|ACA16798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 959

 Score =  881 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/933 (40%), Positives = 585/933 (62%), Gaps = 5/933 (0%)

Query: 26  VSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHR 85
            S + A+E + +S   + +DLT     Y + G+  Q+ TA   DGI RRI V A     R
Sbjct: 20  PSAARALEAVRVSLDAQAIDLTPAIERYRSDGDLIQISTAPGKDGIVRRIAVKARETGAR 79

Query: 86  GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSD 145
            DW VFAL N +D Q++R++V PH+RLVGS    PDLG  RI ++T S+G   +R  + D
Sbjct: 80  PDWIVFALTNDTDEQIDRILVAPHFRLVGSGIVWPDLGGSRIAAITASQGIRPERDESPD 139

Query: 146 SDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIF 205
           +D F +T++PG  VTF+ E+ TPN+PQIYLW+ + Y+      TLY+GIIIG+A LLA+F
Sbjct: 140 ADQFTVTLDPGTTVTFVAELRTPNVPQIYLWDQDAYRKKATGLTLYKGIIIGIAGLLALF 199

Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265
           LT+ ++V  + +     A+AW VL Y  IDFGF  ++  +      I+RA +E  L ++L
Sbjct: 200 LTVVFVVKGAIIFPAAAALAWSVLAYTCIDFGFFQRIFPVTEAAERIYRASAEAVLGATL 259

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325
           ++FLF YL+  RWH +  ++    +  +A L  ++   P V A +ARI++A++       
Sbjct: 260 LVFLFAYLNLARWHVRYSHVALLWLIFLAGLVALAVVDPPVAAGVARISIATVAGVGLLL 319

Query: 326 IIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
           ++Y     GY+RA+LLIP W+L+  W +    AIT +L ND++QPAL+GGLVLIV+LIGF
Sbjct: 320 VLYLAAHNGYDRAILLIPTWLLLTAWVVAAGFAITGQLRNDLVQPALIGGLVLIVMLIGF 379

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           TV+QH  A G     + SD ER++LA+ G+GD+V+DWD+  DRV   P+I   LGL  G+
Sbjct: 380 TVLQHAFAGGGIGATLVSDTERRALALTGAGDVVFDWDVPGDRVFVGPEIEGQLGLKRGA 439

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + GP  NWL  +H  D D +   LD+ +  RRGR+  +FR+RAA   + W  ++ RP+  
Sbjct: 440 LEGPAANWLALLHPFDVDRYSAALDTVIEERRGRISQDFRLRAAAGPYFWFRLKARPVIG 499

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++G+++R +G   D+TE K + E +L +A  DNLTG+PNR+ F DRL   L L+  D  L
Sbjct: 500 ADGEVIRIVGTIADVTELKIAEERLLHDAVHDNLTGLPNRELFHDRLDAALTLAGQDPRL 559

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +PTV V+DID++K++ND +G++ GD +L++L+RR+G LL+  D LAR++G+ F IIL+SE
Sbjct: 560 KPTVFVLDIDRFKQVNDAIGLSAGDSILLTLSRRLGRLLRPQDTLARIAGDEFAIILVSE 619

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAMYH 683
            +  +I  FA ++R++I  PI   +REI +T SIG A   +       ++ KNAE+AM  
Sbjct: 620 RDPDRIIAFAESIRRTITTPITYADREIFLTPSIGVALHETGANAKRDQVFKNAEIAMIQ 679

Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +GG+ +E +R +       R++++ DL  A+E +E+ +++ PI+RL D  + G EAL
Sbjct: 680 AKRQGGDRIEVYRPTMRADRGDRMLLENDLRRALERNEIKVLFQPIVRLEDRTVAGFEAL 739

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINI 800
           ++WDHPK G IS   F+ IAEE  +I  + +F LER A ++ +W+      PP+F  +N+
Sbjct: 740 LRWDHPKHGRISPQTFIPIAEESGLIVDLGVFALERTAAELAAWQQALVVEPPLFASVNV 799

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +S+ LL ++L   ++ ++++T  +P  +KL  +ES+VM NPE +  +L R+ ++G  L+L
Sbjct: 800 SSRQLLRHDLLHDVKTVLARTGVAPGSLKLELTESLVMENPEYAAQMLARIAELGAGLSL 859

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   PFDT+K + S +      R  ILRSI+ MA+ +   I+A+    
Sbjct: 860 DDFGTGYSALAYLQRFPFDTLKIDQSFVRQMASGRTVILRSIVRMAQELGLEIVAEGAET 919

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           E D + L  +GCDY Q      P+  +   +L+
Sbjct: 920 EADAQALAELGCDYAQGFAFGEPMSIHQARQLV 952


>gi|154246351|ref|YP_001417309.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
 gi|154160436|gb|ABS67652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
          Length = 980

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/954 (40%), Positives = 596/954 (62%), Gaps = 8/954 (0%)

Query: 9   SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68
                  L++   L      + A+E I +    +V+DL    +    +   FQ+ TA D 
Sbjct: 12  PMALLVALVVAPLLTLPAGSARAMEAIALRLDAKVVDLLPAVQRETTEDGRFQISTAPDA 71

Query: 69  DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128
           +G+ RRIEV  S  R  GDW  FAL N +D Q++RLIV PHYR+ GS  F PDLG+RRI 
Sbjct: 72  EGVVRRIEVPTSDGRSHGDWIAFALTNNTDEQVDRLIVAPHYRMSGSGLFWPDLGNRRIT 131

Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188
           S+TPS+GF  +R    D+DVF IT++PG+ VTF+ E+ +P LPQ+YLWEP+ YKD VN+F
Sbjct: 132 SLTPSQGFKPERQTAPDADVFLITLDPGSTVTFVAELGSPTLPQLYLWEPDAYKDRVNAF 191

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
           TLY GI+IG+A LLA+FLTI ++V  S M     A+AW VLGYI +DF F SK+  L   
Sbjct: 192 TLYHGIVIGIAGLLALFLTILFVVKGSVMFPAAAALAWAVLGYIGLDFAFWSKVFGLSPI 251

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
               WRA  E  L+ +L++FLF YL+ NRWH +  ++    +  +A L  ++     V A
Sbjct: 252 AEQFWRAAGEAILTGTLLVFLFAYLNLNRWHVRYVHVAAGWLTFLAALVAVALLDAPVAA 311

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
            IAR++L ++ +     II+    GY+RAVL+IP W L+ +W +   + +   + ND+  
Sbjct: 312 GIARLSLLAVAVAGLGVIIWLSQHGYDRAVLIIPTWSLLVVWVLMAGLTVAGFVTNDLAA 371

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
           PAL GGLVLIV+LIGFTV+QH  A     QG  S+ ER++LA+ GSG IVWDWD+  DR+
Sbjct: 372 PALSGGLVLIVMLIGFTVMQHAFAGIGGIQGSTSELERRALALAGSGLIVWDWDVDTDRI 431

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
            T+P+    LGL   S+      WL  +H  DRD FR  LD  +  RRGR+  +FR+RA 
Sbjct: 432 YTSPEAEEALGLKRHSLETEAAGWLEVLHPADRDRFRATLDGIIDQRRGRIDQDFRLRAI 491

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D  +    ++ RP+  ++G+++R +G   D+T ++ + E +L +A +DNLTG+PNR+ FL
Sbjct: 492 DGHYLTFNLKARPVVGADGEVVRCVGTLMDVTGERIAAERLLHDAVRDNLTGLPNRELFL 551

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL+  L ++  DD ++PTVMVID+D++K++N  +G+AV D +L+++ RR+  LLK  D 
Sbjct: 552 DRLSQALTMARLDDKVKPTVMVIDLDRFKQVNVQVGMAVADSILLTVARRLMRLLKPQDT 611

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LAR+SG++FG+IL+SE ++ +I  FA  +R+S+  PI   +RE+ VTASIG       + 
Sbjct: 612 LARISGDQFGMILMSERDAERITTFADTLRRSLRAPIAFADREVFVTASIGLVLAGPDQS 671

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
              E+LK+AELAMY+AK  GG+ +E FR +  +       ++ +L  A+  +++ + Y P
Sbjct: 672 KREEVLKDAELAMYYAKRIGGDRIEVFRPAMRQQKIDRVVLEGELREALARNQISVRYQP 731

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+RL D  I G EA ++W+HP+ G +++SEF+L+AEE  +I  + LF+L+  AR +  W+
Sbjct: 732 IVRLGDRAIGGFEAYMRWNHPRLGELAASEFLLLAEETGLILDLGLFVLDAAARQLGQWQ 791

Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                 PP+F+ +N++S+ LL ++L + +++++++   +P  +KL  +ES+VM NPE + 
Sbjct: 792 RTLRVDPPLFMHVNVSSRQLLRHDLIQDLKSVLARNAVAPGSLKLEVTESLVMENPEYAA 851

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-----RIAILR 900
           ++LGR+R++G  L LDDFGT  S LSYL   PFD+VK +   +  + +      R  I+ 
Sbjct: 852 VVLGRMRELGAGLCLDDFGTGYSALSYLQRFPFDSVKIDPRFVRDTAKGAARAARPVIVG 911

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++I +A ++   ++A+ +  E +  E+ R GC+Y Q      PL       L++
Sbjct: 912 AMIDLAHDLGMDVMAEGLEKETEAAEMARFGCEYGQGVVFGEPLTAEECRTLIE 965


>gi|218530265|ref|YP_002421081.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
            chloromethanicum CM4]
 gi|218522568|gb|ACK83153.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
            chloromethanicum CM4]
          Length = 1050

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%)

Query: 19   VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78
            +  L+   +P+ A+E + ++     +DLT     Y + G+  Q+ TA   DGI RRI V 
Sbjct: 96   LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 155

Query: 79   ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138
            A     R DW VFAL N +D Q++RL+V PH+RLVGS    PDLG  RI ++T SEG   
Sbjct: 156  AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 215

Query: 139  DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198
            +R  + D+D F ITI+PG  VT++ E+  PN+PQ+YLW+ + Y+   +  TLY+GIIIG+
Sbjct: 216  ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 275

Query: 199  ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258
            A LLA+FLTI ++V  + +     A++W VL Y  IDFGFL ++  +      I+RA +E
Sbjct: 276  AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 335

Query: 259  IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318
              L ++L++FLF YL+ +RWH +  ++ F  +  +A L  ++ + P V A +ARI++A++
Sbjct: 336  AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 395

Query: 319  VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
                   I+Y  +  GY+RA+LL+P W+L+ +W +    AIT ++ +D++QPAL+GGLVL
Sbjct: 396  AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 455

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            IV+LIGFTV+QH  A G  S  + SD ER++LA+ G+GDIV+DWD+  DRV   P+I   
Sbjct: 456  IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 515

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            LGL  G++ GP  NWL  +H  D + +   LD+ +  RRGR+ ++FR+R+AD  + W  +
Sbjct: 516  LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 575

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            + RP+  ++G+++R +G  +D+TE K + E +L +A  D+LTG+PNR+ F DRL   L +
Sbjct: 576  KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 635

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            ++ D  L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+  D LAR++G+ F
Sbjct: 636  ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 695

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668
             +IL+SE    +I  FA  +R++IA P+   +RE+ +T SIG A   +          + 
Sbjct: 696  AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEATQGVGNQGSGQT 755

Query: 669  TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726
               E+ KNAE+AM  AK  GG+ +E FR +    RSDR+M++ DL  A+E +E+ +++ P
Sbjct: 756  RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 815

Query: 727  IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I+RL D  + G E L++WDHPK G I  S F+ +AEE  +I  +  F +ER A ++ +W+
Sbjct: 816  IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 875

Query: 787  DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
               +  PPIF  +N++S+ LL ++L   ++ +I++T   P  +KL  +E +VM NPE + 
Sbjct: 876  RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 935

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
             +L R+  +G  L LDDFGT  S +SYL   PFDT+K + S +    + R A+LRS++ M
Sbjct: 936  QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 995

Query: 906  AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             + +    IA+    E D + L   GCDY Q +    P+      +L+
Sbjct: 996  GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 1043


>gi|158422113|ref|YP_001523405.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158329002|dbj|BAF86487.1| diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 965

 Score =  870 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/962 (40%), Positives = 596/962 (61%), Gaps = 8/962 (0%)

Query: 9   SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68
             F    L+L+  L      +FA++ + +    +V DL           E  Q+ TA   
Sbjct: 2   RSFLAFCLVLLGALSLAAPSAFAVDAVAVRLDAKVTDLLPAVERLHTDNERVQISTAPGT 61

Query: 69  DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128
           DGI RRIEV +S  +   +W  FAL+N +D Q++RLIV P YR+VGS  F PDLG+RR++
Sbjct: 62  DGIVRRIEVRSSDGQPNANWVAFALSNNTDEQVDRLIVAPFYRMVGSGLFWPDLGNRRVL 121

Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188
           S+TPS+GF  +R    D+DVF +T++PG  VTF+ E++ P LPQ+YLW+P+ YKD VNSF
Sbjct: 122 SLTPSQGFKPERQNAPDADVFLVTLDPGTTVTFVAELAGPKLPQLYLWQPDAYKDKVNSF 181

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
           TLY GI+IG+A LLA+FLTI ++V  S M     A+AW VLGYI +DF F SK+  L   
Sbjct: 182 TLYHGIVIGIAGLLALFLTILFVVKGSVMFPAAAALAWAVLGYIGLDFSFWSKVFGLSPI 241

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
               WRA  E  L+++L++FLF YL+ NRWH +  ++    +  +A L  ++     V A
Sbjct: 242 AEQFWRASGEAVLTATLLVFLFAYLNLNRWHVRYMHVAAGWLVFLAALVAVALLDAPVAA 301

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
            IAR++LA + +     +I+    GY+RAVL+I  W+L+ +W +   M +T  + ND++ 
Sbjct: 302 GIARLSLAMVAVAGLLVVIWLSQHGYDRAVLIILTWMLLVVWVVMAGMTVTGVVTNDLVA 361

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
           PAL GGLVLIV+LIGFTV+QH  A     QG  SD ER++LA+ GSG IVWDWD+  DR+
Sbjct: 362 PALSGGLVLIVMLIGFTVMQHAFAGVGAVQGSASDLERRALALAGSGYIVWDWDVDSDRI 421

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +P+    LGL   S+      WL  +H  DRD FR  LD  +  RRGR+  +FR+RA 
Sbjct: 422 YVSPEAEEALGLKRHSLETEAAGWLEVLHPGDRDRFRATLDGIIEQRRGRIDQDFRLRAI 481

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D  +    +R RP+  ++G+++R IG+ +D+T  + + E +L +A +DNLTG+ NR+ FL
Sbjct: 482 DGHYLTFNLRARPVVGADGEVVRCIGVLSDVTGDRIAAERLLHDAVRDNLTGLANRELFL 541

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL   L  + TD+++RPTVM+IDID++K++N  +G+AVGD +L+++ RR+  LLK  D 
Sbjct: 542 DRLDQALAFAKTDESIRPTVMIIDIDRFKQVNVSVGMAVGDSILLTVARRLMRLLKPQDT 601

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LAR+SG++FG+IL+SE +  +I  FA  +R+S+  PI+  EREI +TASIG    ++   
Sbjct: 602 LARISGDQFGLILLSERDPERITTFADTLRRSLRAPISFAEREIFITASIGLVLSSADPG 661

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
              ++LKNAELAM+ AK  GG+ +E FR  +   + DR  ++ DL  A+E  E+ + Y P
Sbjct: 662 KREDVLKNAELAMFFAKRIGGDRIEVFRPAMRQQKIDRTSLESDLRRALERDEITVRYQP 721

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           ++RL D  I G EA ++W HP  G +++++F+ +AEE  +I  + LF+LER AR +  W+
Sbjct: 722 VVRLHDRAIGGFEAFMRWKHPSLGELAAADFLHVAEESGVILELGLFVLERAARQLGQWQ 781

Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                 PP+F+ +N++S+ LL ++L + +++++++ +  P  +KL  +E++ M NPE S 
Sbjct: 782 RILKVDPPLFMTVNVSSRQLLRHDLIQDLKSVLARNVVEPGSLKLEVTEALAMENPEYSA 841

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILR 900
           ++L R+R +G  L +DDFG   S L+YL  +PFD +K +   +  +        R  I+ 
Sbjct: 842 VMLQRMRDLGAGLVMDDFGVGQSSLAYLPRLPFDAIKIDNRFIRNTVKGSVRAARPIIVG 901

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           S+I +A  +   ++++ +  E +  EL R+GC+Y Q +    PL       LL+      
Sbjct: 902 SMIELAHQLGIEVMSEGLEREQEAAELGRLGCEYGQGTLFGEPLTAEECRALLEPSPAEA 961

Query: 961 KN 962
           + 
Sbjct: 962 RR 963


>gi|114706691|ref|ZP_01439592.1| sensory box/GGDEF domain/EAL domain protein [Fulvimarina pelagi
           HTCC2506]
 gi|114538083|gb|EAU41206.1| sensory box/GGDEF domain/EAL domain protein [Fulvimarina pelagi
           HTCC2506]
          Length = 979

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/937 (43%), Positives = 598/937 (63%), Gaps = 4/937 (0%)

Query: 30  FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89
            A++ + +S ++ V+DL     +Y N G  FQV      +GI RRIE+ A++ +  GDWA
Sbjct: 43  HALDVVAVSPNESVIDLRPAIEVYRNAGRSFQVSAVPGPEGIVRRIEIDATTQQANGDWA 102

Query: 90  VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149
           VFAL N SD Q++RLIV PH+   GS   +PDLGS+RI ++TPS+GF+L+R  +S++D F
Sbjct: 103 VFALTNESDEQIDRLIVAPHFTPAGSGVLNPDLGSQRIAAITPSQGFALERQVSSEADEF 162

Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209
            +T++PGA+VTF+ E++   LP + LWEP  Y++ VN+FTLYRGI++G+A LLA+FLTI 
Sbjct: 163 LVTLDPGAIVTFVAELTAERLPDVRLWEPGTYRENVNAFTLYRGIVLGIAGLLAVFLTIL 222

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
           ++V  S+M     A++W VL YI IDF F  KL+    G+  +WRA  E+A   +LI+FL
Sbjct: 223 FVVKGSAMFPAAAALSWSVLAYICIDFQFWEKLMPFAPGQEPLWRAGVEVAFLFTLILFL 282

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           F YL  NRWH  +  ++   +A +  +   +   P+  A I R++LA         II  
Sbjct: 283 FAYLSLNRWHGYLTIVSGVVLAAVGAIGAYTLVDPVSAAGITRVSLAFTAALGLAAIISL 342

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            ++ ++RAV+L+P W+L+ +W    WM +T R+ NDIIQPAL G LVLIV+LIGFTV+QH
Sbjct: 343 SIQRFDRAVMLLPTWLLLIVWIWAAWMTVTGRISNDIIQPALGGSLVLIVLLIGFTVMQH 402

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             A G  +QG+ SD ER+SLA+ GSGD V+DWD++RDR+    + A +  L   +M+GP 
Sbjct: 403 GFAGGTLAQGLVSDLERRSLALAGSGDAVFDWDVIRDRIFIDSESAMLSALPVDAMNGPA 462

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           RNWLP +H +DRD F+  LD+ + +RRGR+  +FRVR  D  +HW+ +R RPM  ++G++
Sbjct: 463 RNWLPVLHPDDRDRFKLTLDTIIEHRRGRMHQDFRVRDGDGHYHWLALRARPMLGTDGEV 522

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +R +G   DIT  KK+ + +L +A  D LTG+PNR+ F+DRL  I  L+A  + + PTV 
Sbjct: 523 MRCVGTLKDITSAKKAEDRLLQDAMVDQLTGLPNREVFMDRLEAINTLAAHSEGISPTVF 582

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           VIDID++K++ND  G+A GD +L+++ RR+   LK  D LARLSG++FG IL+SE +S  
Sbjct: 583 VIDIDRFKQVNDDYGLATGDTILLTIGRRLKRTLKPQDTLARLSGDQFGAILVSETSSDA 642

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +A FA  MR++I  PI   ER+I +TASIG   W+S   T  E L  A+LAM+ AK  GG
Sbjct: 643 VASFAEHMREAIRAPIAFAERDIVLTASIGLTGWSSD-QTPPEALTEADLAMHQAKRMGG 701

Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           + +E FR +      +RV ++ DL  A E  EL L + PI+ L DE I G EAL++WDHP
Sbjct: 702 DRIEPFRPAYKAIGSNRVALETDLRRAFERHELALAFQPIVALEDETIAGFEALLRWDHP 761

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G IS +EF+ +AE   +I  +  F LE  A+ +  W        +F+ +N++S+ L+ 
Sbjct: 762 RRGKISPAEFVPLAERSGLIVQLGQFALEEAAKRLSDWHRATGDTKLFMSVNVSSRQLIT 821

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L   +  ++ +     S +KL  +ES+VM NPERS  LL R+ + G+ L+LDDFGT  
Sbjct: 822 QDLIADVDTVLQRYRLPASALKLEMTESLVMDNPERSAQLLDRIVERGVGLSLDDFGTGY 881

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           S L+YL   PFDT+K + S +  ++  +R  IL+SI+ MA ++   I+A+ +  E D+  
Sbjct: 882 SSLAYLMRFPFDTLKIDQSFLKHNSQPQRPVILKSIVTMAHDLGLKIVAEGVETEADVAT 941

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           L +M C+Y Q    A PL      ++L  + P ++ T
Sbjct: 942 LRQMKCEYAQSFLYAKPLNQEEARRMLVAKEPGLRRT 978


>gi|240138621|ref|YP_002963093.1| diguanylate cyclase (GGDEF domain)/phosphodiesterase (EAL domain)
           with PAS/PAC and GAF sensor domains [Methylobacterium
           extorquens AM1]
 gi|240008590|gb|ACS39816.1| diguanylate cyclase (GGDEF domain)/phosphodiesterase (EAL domain)
           with PAS/PAC and GAF sensor domains [Methylobacterium
           extorquens AM1]
          Length = 976

 Score =  866 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%)

Query: 19  VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78
           +  L+   +P+ A+E + ++     +DLT     Y + G+  Q+ TA   DGI RRI V 
Sbjct: 22  LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 81

Query: 79  ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138
           A     R DW VFAL N +D Q++RL+V PH+RLVGS    PDLG  RI ++T SEG   
Sbjct: 82  AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 141

Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198
           +R  + D+D F ITI+PG  VT++ E+  PN+PQ+YLW+ + Y+   +  TLY+GIIIG+
Sbjct: 142 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 201

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258
           A LLA+FLTI ++V  + +     A++W VL Y  IDFGFL ++  +      I+RA +E
Sbjct: 202 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 261

Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318
             L ++L++FLF YL+ +RWH +  ++ F  +  +A L  ++ + P V A +ARI++A++
Sbjct: 262 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 321

Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
                  I+Y  +  GY+RA+LL+P W+L+ +W +    AIT ++ +D++QPAL+GGLVL
Sbjct: 322 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 381

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           IV+LIGFTV+QH  A G  S  + SD ER++LA+ G+GDIV+DWD+  DRV   P+I   
Sbjct: 382 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 441

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LGL  G++ GP  NWL  +H  D + +   LD+ +  RRGR+ ++FR+R+AD  + W  +
Sbjct: 442 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 501

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + RP+  ++G+++R +G  +D+TE K + E +L +A  D+LTG+PNR+ F DRL   L +
Sbjct: 502 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 561

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           ++ D  L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+  D LAR++G+ F
Sbjct: 562 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 621

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668
            +IL+SE    +I  FA  +R++IA P+   +RE+ +T SIG A   +          + 
Sbjct: 622 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEATQGVGNQGSGQT 681

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726
              E+ KNAE+AM  AK  GG+ +E FR +    RSDR+M++ DL  A+E +E+ +++ P
Sbjct: 682 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 741

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+RL D  + G E L++WDHPK G I  S F+ +AEE  +I  +  F +ER A ++ +W+
Sbjct: 742 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 801

Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
              +  PPIF  +N++S+ LL ++L   ++ +I++T   P  +KL  +E +VM NPE + 
Sbjct: 802 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 861

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
            +L R+  +G  L LDDFGT  S +SYL   PFDT+K + S +    + R A+LRS++ M
Sbjct: 862 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 921

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            + +    IA+    E D + L   GCDY Q +    P+      +L+
Sbjct: 922 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 969


>gi|163851456|ref|YP_001639499.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663061|gb|ABY30428.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 976

 Score =  866 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%)

Query: 19  VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78
           +  L+   +P+ A+E + ++     +DLT     Y + G+  Q+ TA   DGI RRI V 
Sbjct: 22  LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 81

Query: 79  ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138
           A     R DW VFAL N +D Q++RL+V PH+RLVGS    PDLG  RI ++T SEG   
Sbjct: 82  AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 141

Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198
           +R  + D+D F ITI+PG  VT++ E+  PN+PQ+YLW+ + Y+   +  TLY+GIIIG+
Sbjct: 142 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 201

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258
           A LLA+FLTI ++V  + +     A++W VL Y  IDFGFL ++  +      I+RA +E
Sbjct: 202 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 261

Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318
             L ++L++FLF YL+ +RWH +  ++ F  +  +A L  ++ + P V A +ARI++A++
Sbjct: 262 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 321

Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
                  I+Y  +  GY+RA+LL+P W+L+ +W +    AIT ++ +D++QPAL+GGLVL
Sbjct: 322 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 381

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           IV+LIGFTV+QH  A G  S  + SD ER++LA+ G+GDIV+DWD+  DRV   P+I   
Sbjct: 382 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 441

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LGL  G++ GP  NWL  +H  D + +   LD+ +  RRGR+ ++FR+R+AD  + W  +
Sbjct: 442 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 501

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + RP+  ++G+++R +G  +D+TE K + E +L +A  D+LTG+PNR+ F DRL   L +
Sbjct: 502 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 561

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           ++ D  L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+  D LAR++G+ F
Sbjct: 562 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 621

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668
            +IL+SE    +I  FA  +R++IA P+   +RE+ +T SIG A   +          + 
Sbjct: 622 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEATQGVGNQGSGQT 681

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726
              E+ KNAE+AM  AK  GG+ +E FR +    RSDR+M++ DL  A+E +E+ +++ P
Sbjct: 682 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 741

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+RL D  + G E L++WDHPK G I  S F+ +AEE  +I  +  F +ER A ++ +W+
Sbjct: 742 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 801

Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
              +  PPIF  +N++S+ LL ++L   ++ +I++T   P  +KL  +E +VM NPE + 
Sbjct: 802 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 861

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
            +L R+  +G  L LDDFGT  S +SYL   PFDT+K + S +    + R A+LRS++ M
Sbjct: 862 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 921

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            + +    IA+    E D + L   GCDY Q +    P+      +L+
Sbjct: 922 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 969


>gi|254561219|ref|YP_003068314.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254268497|emb|CAX24454.1| diguanylate cyclase (GGDEF domain) /phosphodiesterase (EAL domain)
           with PAS/PAC and GAF sensor domains [Methylobacterium
           extorquens DM4]
          Length = 976

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/948 (39%), Positives = 593/948 (62%), Gaps = 13/948 (1%)

Query: 19  VLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS 78
           +  L+   +P+ A+E + ++     +DLT     Y + G+  Q+ TA   DGI RRI V 
Sbjct: 22  LAGLIGTAAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQISTAPGKDGIVRRIAVK 81

Query: 79  ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138
           A     R DW VFAL N +D Q++RL+V PH+RLVGS    PDLG  RI ++T SEG   
Sbjct: 82  AREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPDLGGSRIAAITASEGIRP 141

Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGV 198
           +R  + D+D F ITI+PG  VT++ E+  PN+PQ+YLW+ + Y+   +  TLY+GIIIG+
Sbjct: 142 ERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAYRKKTSGLTLYKGIIIGI 201

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258
           A LLA+FLTI ++V  + +     A++W VL Y  IDFGFL ++  +      I+RA +E
Sbjct: 202 AGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQRVFPVTELAERIYRASAE 261

Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318
             L ++L++FLF YL+ +RWH +  ++ F  +  +A L  ++ + P V A +ARI++A++
Sbjct: 262 AVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAVFDPPVAAGVARISIAAV 321

Query: 319 VLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
                  I+Y  +  GY+RA+LL+P W+L+ +W +    AIT ++ +D++QPAL+GGLVL
Sbjct: 322 AGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITGQIGSDLVQPALIGGLVL 381

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           IV+LIGFTV+QH  A G  S  + SD ER++LA+ G+GDIV+DWD+  DRV   P+I   
Sbjct: 382 IVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIEAQ 441

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LGL  G++ GP  NWL  +H  D + +   LD+ +  RRGR+ ++FR+R+AD  + W  +
Sbjct: 442 LGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRITHDFRLRSADGPYAWYRL 501

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + RP+  ++G+++R +G  +D+TE K + E +L +A  D+LTG+PNR+ F DRL   L +
Sbjct: 502 KARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAALAM 561

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           ++ D  L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+  D LAR++G+ F
Sbjct: 562 ASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEF 621

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS---------SKI 668
            +IL+SE    +I  FA  +R++IA P+   +RE+ +T SIG A   +          + 
Sbjct: 622 AVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGIALHEAAQGVGNQGSGQT 681

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726
              E+ KNAE+AM  AK  GG+ +E FR +    RSDR+M++ DL  A+E +E+ +++ P
Sbjct: 682 RREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQP 741

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+RL D  + G E L++WDHPK G I  S F+ +AEE  +I  +  F +ER A ++ +W+
Sbjct: 742 IVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLGNFAIERTALELAAWQ 801

Query: 787 DQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
              +  PPIF  +N++S+ LL ++L   ++ +I++T   P  +KL  +E +VM NPE + 
Sbjct: 802 RSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYAA 861

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
            +L R+  +G  L LDDFGT  S +SYL   PFDT+K + S +    + R A+LRS++ M
Sbjct: 862 QMLTRIHDLGAGLVLDDFGTGYSAISYLQRFPFDTIKIDQSFVRQMGQGRTAMLRSVLRM 921

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            + +    IA+    E D + L   GCDY Q +    P+      +L+
Sbjct: 922 GQELGLATIAEGAESEEDAQVLQEFGCDYAQGAAFGEPMTVLQARQLV 969


>gi|296445908|ref|ZP_06887859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Methylosinus
           trichosporium OB3b]
 gi|296256576|gb|EFH03652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Methylosinus
           trichosporium OB3b]
          Length = 956

 Score =  865 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/944 (39%), Positives = 591/944 (62%), Gaps = 5/944 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           +LI +LF+++  S + AI+ + +      +DLT     Y +QG+  QV TA   DGI RR
Sbjct: 6   YLIALLFVVFWASRALAIDSVRVPQDAAAIDLTHAVETYSSQGDRLQVSTAPGSDGIIRR 65

Query: 75  IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134
           IEV A     R  W VFAL N +D QLERLIV PH+RL GS    PDLG+ R+ +VT S+
Sbjct: 66  IEVGAKEPGTRPSWIVFALTNDTDEQLERLIVAPHFRLQGSGVVWPDLGAIRLSAVTASQ 125

Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194
           GF+ +R  ++D+DVFR+TI+PGA +T++ E+ TPNLPQ+YLWEP+ YKD V S TLY+GI
Sbjct: 126 GFAPEREDSADADVFRLTIDPGATITYVAELRTPNLPQLYLWEPDAYKDKVTSLTLYKGI 185

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           +IG+A LLA+FLTI ++V  + +     A+AW VL Y+ IDFGF +K+         IWR
Sbjct: 186 VIGIAGLLALFLTIVFVVKGAVIFPAAAALAWTVLAYVCIDFGFWAKIFGADPNADRIWR 245

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
           A +E  LS++L++FLF YL+ NRWH +  ++    +  +A L  ++ +   V A +ARI+
Sbjct: 246 AGAETVLSATLVVFLFAYLNLNRWHVRAWHVAALWLLILADLVGLAVFDAPVAAGVARIS 305

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
           LA++ +     ++Y    G++RA++LIP W L+ +W       +   L ND++ PALVGG
Sbjct: 306 LATVAVVGFVLVLYLATHGFDRAIMLIPTWFLLLLWVCAAGFTVGGWLTNDLVSPALVGG 365

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LVLIV+LIGFTV+Q+  A+G    G  S+ ER++LA+ G+ +IV+DWD+  D +  +P++
Sbjct: 366 LVLIVMLIGFTVMQNAFASGGLGHGAISEVERKALALTGANEIVFDWDVPADYIYVSPEV 425

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
              LGL  G + G   +WL  +H  + D +R  LD+ +  RRGR+  EFR+R AD  +  
Sbjct: 426 EEQLGLDRGGLEGAASSWLALLHPFEHDRYRACLDAILEQRRGRINQEFRLRGADGHYMC 485

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +R RP+   +G+++R +G   D+T+ + + E +L +A  DNLTG+PNR+ F DRL   
Sbjct: 486 YRLRARPVIGQDGEVIRVVGALTDVTDMRNAQERLLHDAVHDNLTGLPNRELFCDRLAAA 545

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +  D  +RPTV+ ID+D++++ N+ +G+A GD VL+++  R+  LL+  D LARL G
Sbjct: 546 LVFAGLDSGVRPTVLSIDVDRFRQTNEQVGMATGDSVLLTVAHRLTRLLQKQDTLARLGG 605

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEM 673
           +RF IIL+SE +   +   A A+R+++A P+   +REI ++ SIG A +        ++M
Sbjct: 606 DRFAIILVSETHVDHVIALADAVRRALATPVRFTDREIALSVSIGVALFDKELHPDHNDM 665

Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L++AE+A+ HAK  GGN +E FR  + S RSDR+ ++ +L  A+E  E+ + + P++RL 
Sbjct: 666 LEDAEIALRHAKRNGGNRIEVFRPAMRSQRSDRLTLEAELRRALERGEVKVFFQPVVRLE 725

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN- 790
           D  I G EA+++WDHP+ G +   EF  +AE+  ++    L  LER AR++ +W+     
Sbjct: 726 DRTIAGFEAVLRWDHPRLGQLDPREFGQVAEQTGLVVDFGLLALERTARELAAWQRALAV 785

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            PPIF  + +AS+ LL ++L   +++++ +   +   +KL  +ES+VM NPE +  +L R
Sbjct: 786 DPPIFATVEVASRQLLRHDLLRDVKSVLMRNDIARGSLKLGLTESLVMENPEYTVEMLAR 845

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNI 909
           ++++G  L+L+DFG+  S L+YL   PFD +K + + +  +     A ILRS+I +A ++
Sbjct: 846 IKELGAGLSLEDFGSGYSSLAYLQRFPFDAIKIDRNFVRQTGRASRAVILRSLIALANDL 905

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+    E D  EL ++GC Y Q      P+      +L+
Sbjct: 906 GMDVIAEGAETESDAIELYQLGCAYAQGYAFGRPITPMEARRLV 949


>gi|188581246|ref|YP_001924691.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179344744|gb|ACB80156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 970

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/963 (39%), Positives = 599/963 (62%), Gaps = 16/963 (1%)

Query: 7   LRSHFEKAFLI-----LVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQ 61
           +R+      ++      +  LL   +P+ A+E + ++     +DLT     Y + G+  Q
Sbjct: 1   MRTLSLVLAILTAVAGALAGLLGTTAPAHAVEAVRVTLDAPAIDLTPTIERYRSDGDLIQ 60

Query: 62  VFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPD 121
           + TA   DGI RRI V A     R DW VFAL N +D Q++RL+V PH+RLVGS    PD
Sbjct: 61  ISTAPGKDGIVRRIAVKAREAGARPDWMVFALTNDTDEQIDRLLVAPHFRLVGSGVIWPD 120

Query: 122 LGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFY 181
           LG  RI ++T SEG   +R  + D+D F ITI+PG  VT++ E+  PN+PQ+YLW+ + Y
Sbjct: 121 LGGSRIAAITASEGIRPERDESLDADQFLITIDPGTTVTYVAELKGPNIPQVYLWDQDAY 180

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
           +   +  TLY+GIIIG+A LLA+FLTI ++V  + +     A++W VL Y  IDFGFL +
Sbjct: 181 RKKTSGLTLYKGIIIGIAGLLALFLTIIFVVKGAIIFPAAAALSWAVLAYACIDFGFLQR 240

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
           +  +      I+RA +E  L ++L++FLF YL+ +RWH +  ++ F  +  +A L  ++ 
Sbjct: 241 VFPVTELAERIYRASAEAVLGATLLVFLFAYLNLSRWHVRYSHVAFFWLTFLAGLVALAV 300

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLLIPAWILIFIWFIGLWMAITK 360
           + P V A +ARI++A++       I+Y  +  GY+RA+LL+P W+L+ +W +    AIT 
Sbjct: 301 FDPPVAAGVARISIAAVAGVGLLLILYLAVHNGYDRAILLVPTWLLLLVWVVAAGFAITG 360

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           ++ +D++QPAL+GGLVLIV+LIGFTV+QH  A G  S  + SD ER++LA+ G+GDIV+D
Sbjct: 361 QIGSDLVQPALIGGLVLIVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFD 420

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+  DRV   P+I   LGL  G++ GP  NWL  +H  D + +   LD+ +  RRGR+ 
Sbjct: 421 WDVPGDRVFAGPEIEAQLGLKRGALEGPAANWLGLLHPFDVERYSAALDTVIEERRGRII 480

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           ++FR+R+AD  + W  ++ RP+  ++G+++R +G  +D+TE K + E +L +A  D+LTG
Sbjct: 481 HDFRLRSADGPYAWYRLKARPVIGTDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTG 540

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+ F DRL   L L++ D  L+P V+ +DID++K IND +G++ GD +L++L+RR+G
Sbjct: 541 LPNRELFHDRLEAALALASQDPRLKPAVIALDIDRFKAINDAIGLSAGDSILLTLSRRLG 600

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LL+  D LAR++G+ F +IL+SE    +I  FA  +R++IA P+   +RE+ +T SIG 
Sbjct: 601 RLLRPQDTLARVAGDEFAVILLSEREPDRILSFAEMIRRAIATPVTYADREVFLTVSIGI 660

Query: 661 AS---WTSSKITS----SEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDL 711
           A       +   +     E+ KNAE+AM  AK  GG+ +E FR +    RSDR+M++ DL
Sbjct: 661 ALHEAAPGAGQGAQPRREEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADL 720

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E +E+ +++ PI+RL D  + G E L++WDHPK G I  S F+ +AEE  +I  + 
Sbjct: 721 RKALERNEIKVLFQPIVRLEDRTVAGFETLLRWDHPKLGRIPPSTFLPVAEETGVIVPLG 780

Query: 772 LFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            F +ER A ++ +W+   +  PPIF  +N++S+ LL ++L   ++ +I++T   P  +KL
Sbjct: 781 NFAIERTALELAAWQRSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKL 840

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E +VM NPE +  +L R+  +G  L LDDFGT  S +SYL   PFDT+K + S +  
Sbjct: 841 EMAEGLVMENPEYAAQMLTRIHDLGAGLILDDFGTGYSAISYLQRFPFDTIKIDQSFVRQ 900

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             + R A+LRS++ M + +    IA+    E D + L  +GCDY Q +    P+      
Sbjct: 901 LGQGRTAMLRSVLRMGQELGLATIAEGAESEEDAQGLQELGCDYAQGAAFGEPMTVLQAR 960

Query: 951 KLL 953
           +L+
Sbjct: 961 QLV 963


>gi|300024403|ref|YP_003757014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526224|gb|ADJ24693.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and
           periplasmic/7TM domain sensor(s) [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 1240

 Score =  843 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/954 (33%), Positives = 543/954 (56%), Gaps = 8/954 (0%)

Query: 14  AFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR 73
              + +L++L +   + A+ PI I      +++T++   Y  +G+  QV T+A  DG+S 
Sbjct: 18  VLAVAILWMLGLAGHAAALTPIPIQDDQDRVEITNLGEAYEGRGDSLQVETSAGQDGVSG 77

Query: 74  RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           R+ V AS      +W VFAL N +D  LERL+    Y +VGS    PDL +RRI SVTPS
Sbjct: 78  RMTVRASVPGTSPNWMVFALTNKTDKSLERLLAADRYSIVGSGTVWPDLDARRIESVTPS 137

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
            GF  +RI +  +DVFRIT+ PG  +T++ E++  +  ++YLW+P  Y+       L+ G
Sbjct: 138 VGFVPERIKSDKADVFRITLEPGQTITYVAELAGEHFSRLYLWKPIDYEIKSRDRQLFNG 197

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
            ++G+  LLAIFLT  +  N   +      ++W VL Y+ +DFGF  KL NL   +  ++
Sbjct: 198 AMLGLTGLLAIFLTAIFAANHKLIFPAAALVSWTVLSYLCVDFGFFHKLFNLRPEDNAVY 257

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA  E A++SS +IFL  +L    WH  V  +    +     L  ++   P + A+ AR+
Sbjct: 258 RAAGEAAMASSFVIFLSTFLRLGLWHGMVRMMIGVWMVAQLTLIAVAVIDPRLAATFARL 317

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +   I      F ++   KG +RA+ L+P W+L+ +W     M ++ R+  D++  +L+ 
Sbjct: 318 SFLMIGGVGGLFTLFLAFKGQDRALSLVPTWLLLLVWIFATGMTLSGRMSGDVVVSSLIA 377

Query: 374 GLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           GLVL+VIL+GFTV Q+   +   +  G  ++ + +SLA+  SG  VW+W+I RD +  +P
Sbjct: 378 GLVLVVILMGFTVTQYAFRSSDAAYAGAPTELQGRSLALAASGSTVWEWNIRRDEIKVSP 437

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
           ++   L L  G +   + ++L ++H  D++ FR ++ S       R++ +FR+R +DN +
Sbjct: 438 EVEIALSLMPGELSTKVEDFLRHVHPTDKERFRVMMMSAQERSGVRIRTDFRLRHSDNSW 497

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W  +    + NS+G  LR +G+  D+++ K++ E +L +A   +LTG+PNR+ FLDRL 
Sbjct: 498 RWFELEAASVPNSDGRTLRCVGLLRDVSDMKRAHERLLHDAVNCSLTGLPNRELFLDRLK 557

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++  + TD  +RP V+ ID+DK+K IN   G+  GD +L+++ RR+   L   D +AR+
Sbjct: 558 GVVSRAKTDGGVRPAVIFIDLDKFKSINSSFGLVRGDSLLLTVARRLQRHLGPHDTVARV 617

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G++F ++ + E  +  +   A  +R+S+  PI L  +E+ +T SIG A+W  ++    +
Sbjct: 618 GGDQFAMLFVGEREARNLPALAERVRRSLRAPIPLANQEVILTGSIGVAAWDENQSADGD 677

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +LK+AELAMY AK  G + +E F  S  R     I  +L  A+E  +L +VY PI+ L  
Sbjct: 678 LLKDAELAMYRAKRAGADRIEVFDASMRRDRDSNIGAELAKAIEKGQLKVVYQPIVYLPT 737

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +E+ G EA  +W+HPK G ++ +  +  A E   +  ++ ++L R A+D   W  +   P
Sbjct: 738 KELAGFEAFARWEHPKLGLVNPASVIDEANEPDAMVKVSAYLLLRAAKDASRWLAELPRP 797

Query: 793 --PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+F+ +NI+S  +   E  + ++ ++ + +  P  ++L  +E+++MGNPE++  +L  
Sbjct: 798 ERPLFVTVNISSPHIFKPESIQEIRHILGRNIVPPGTLRLEIAENLMMGNPEQAIEVLKV 857

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNI 909
           LR  G  L+LD+FGT  S L+YL   PFDT+K    L+ GS T    AI+RS++ +A  +
Sbjct: 858 LRGSGAELSLDEFGTGYSSLAYLNRFPFDTIKVCRGLVRGSGTANGAAIMRSMVALAHEL 917

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             T++A+ +    +   L  +GC+Y Q  H   P+   ++ +LLK    +V+ +
Sbjct: 918 SKTVVAEGVERADEATFLRSIGCEYAQGYHFGEPIPERAVAQLLK----MVRRS 967


>gi|304393515|ref|ZP_07375443.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Ahrensia
           sp. R2A130]
 gi|303294522|gb|EFL88894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Ahrensia
           sp. R2A130]
          Length = 949

 Score =  841 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/945 (40%), Positives = 601/945 (63%), Gaps = 4/945 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F++ VL      + + A++P++++S    +DL   T  +   G    V TA D  G+  R
Sbjct: 4   FILAVLLTCLATTSARALDPVDVTSQATAIDLKGTTDFHPAAGARLAVQTAPDAGGVINR 63

Query: 75  IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134
           IEV ++     GDW  FALAN SD Q++RLIV PHYRL GS F  PDLG +RI+S+TPS+
Sbjct: 64  IEVRSTGNEGSGDWLSFALANKSDRQIDRLIVAPHYRLPGSGFMWPDLGRQRIVSITPSQ 123

Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194
           GF+LDR  +  +D+FR+T++PGAVVTF+ E+ + ++P + LWEP+ YKD VNSFTLY GI
Sbjct: 124 GFALDRQLDGGADIFRVTLDPGAVVTFVAELGSADVPSLTLWEPDAYKDAVNSFTLYEGI 183

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           ++G++ LLA+FLTI ++V  S+M   T A+AW VL YI +DFGF+SK+V+L  G+L  WR
Sbjct: 184 VLGISGLLAVFLTILFVVKGSAMFPATAALAWAVLAYICVDFGFISKIVDLAPGDLNRWR 243

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
           A +E+AL+++L+IF + YLH  RW+++  ++    IA +  LF  + + P   + IAR+ 
Sbjct: 244 AGTEVALAATLLIFPYAYLHLGRWNSRWNWLMLGWIAAMGALFAAAIFMPERASGIARMA 303

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
            A  V      II    + Y+RA+L++P W+L   W +G W  I+ +LDNDIIQPAL GG
Sbjct: 304 FAGAVGVTLLLIIILCFQRYDRAILIVPTWLLTIAWTVGGWWTISGQLDNDIIQPALGGG 363

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LVL+V+L+ FTV+QH  A G  +Q + SD ERQ+LA+ GSGD V+DWD+ RDR+   P++
Sbjct: 364 LVLLVLLLAFTVMQHAFAGGAIAQNLVSDVERQALALTGSGDAVFDWDVDRDRIHAGPEV 423

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           AT LGL  G++ G   +WLP++H  DR  FR+ LD  + +R+GRL+ + R+R  D  + W
Sbjct: 424 ATALGLKQGALDGAPADWLPHLHPEDRSPFRSALDVILDHRKGRLKLDIRLRGDDAHYTW 483

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +R RP+  ++G++LR +G   ++T+Q+ + E +L +A  DNLTG+PN+Q FLDR+ + 
Sbjct: 484 YALRARPVIGNDGEVLRCVGSLTNVTDQRVAQERLLHDAVHDNLTGLPNKQIFLDRIESA 543

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           + ++    +LRP++ +ID D++ ++N   G+A GD VL+++ RRI  +L+  D LARLS 
Sbjct: 544 IAIAQQTSDLRPSLFIIDFDRFAQLNKDAGVAAGDAVLLTMARRIRRILRPQDCLARLSN 603

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++FG++L+S+    K+   A A++++I  PI+  E  I+VTAS+G  SW++ + T   + 
Sbjct: 604 DQFGLLLLSQGEPEKVVVLADALQRAIRAPISFAEEGISVTASVGLVSWSNDRSTVEPLY 663

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+AE AM  AK  GG+ +E FR +             DL  A++ ++L +VY PI+ L  
Sbjct: 664 KDAETAMLQAKRLGGDRIEPFRPAFRHGQAPVGDFNHDLRSALDLNQLEMVYQPIVDLKT 723

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            ++VG EAL++W HP+ G +  SEF+  AE+  +I  +  F LE+ A ++          
Sbjct: 724 RQLVGFEALMRWQHPERGAVMPSEFIPAAEKSGLIVRLGQFALEQAATELARMIA-TGDE 782

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            +F+ +N++S+ LL ++L   ++ ++++       ++L  +ES++M NPE +  +L R+R
Sbjct: 783 NLFVSVNVSSRQLLRHDLINDVKTILARHSLPRDALRLELTESLIMDNPEHATRVLARVR 842

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIET 911
             G  L LDDFGT  S LS+L   PFDT+K + + +   +  +R  IL+SI+ MA ++  
Sbjct: 843 DAGAGLALDDFGTGFSSLSHLMRFPFDTIKIDRAFLDKQAGPERPIILKSIVTMAHDLGM 902

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +IA+    E D  EL +MGC++ Q  H    +  +  ++LL  +
Sbjct: 903 QVIAEGAESERDALELEQMGCEFAQGFHFGPGVSADDAMQLLTRK 947


>gi|170748008|ref|YP_001754268.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654530|gb|ACB23585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 976

 Score =  839 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/929 (39%), Positives = 582/929 (62%), Gaps = 5/929 (0%)

Query: 30  FAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWA 89
            A+E + ++    V+DLT+    Y + G+  Q+ TA   DGI RRI V A     R DW 
Sbjct: 41  RAVEAVRVTLDAPVIDLTTAIERYRSDGDLIQISTAPGKDGIVRRIVVKARDAGARPDWI 100

Query: 90  VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149
           VFAL N +D Q++R++V PH+RLV S    PDLG  RI ++T S+G   +R  N ++D F
Sbjct: 101 VFALTNDTDEQIDRILVAPHFRLVDSGVIWPDLGGSRIAAITASQGIRPERDENPEADQF 160

Query: 150 RITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIF 209
            IT++PGA VT++ E+   N+PQ+ LW+ + Y+      TLY+GIIIG++ LLA+FLTI 
Sbjct: 161 TITLDPGATVTYVAELRGSNVPQLRLWDQDAYRRKTAGLTLYKGIIIGISGLLALFLTIV 220

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
           ++V  + +     A+AW VL Y  IDFGFL ++  +      ++RA +E  L ++L++FL
Sbjct: 221 FVVKGAIIFPAAAALAWSVLAYACIDFGFLQRVFPVTELAERVYRASAEAVLGATLLVFL 280

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           F YL+  RWH +  ++ F  +A +A L  ++ + P V A +ARI++A++       I+Y 
Sbjct: 281 FAYLNLARWHVRYSHVAFFWLAFLAGLVGLAVFDPPVAAGVARISIAAVAGIGLLLIVYL 340

Query: 330 GMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
               GY+RA+LL+P W+L+ +W      A+T ++ +D++QPAL+GGLVLIV+LIGFTV+Q
Sbjct: 341 AAHNGYDRAILLVPTWLLLVVWVTAAGFAVTGQIGSDLVQPALIGGLVLIVMLIGFTVLQ 400

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H  A G  S  + SD ER++LA+ G+GD+V+DWD+  DRV   P+I   LGLA G++ GP
Sbjct: 401 HAFAGGGLSHALVSDTERRALALTGAGDVVFDWDVPADRVFVGPEIEGQLGLARGTLEGP 460

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             NWL  +H  D + +   LD+ +  RRGR+ ++FR+R+    F W  ++ RP+  ++G+
Sbjct: 461 ATNWLGALHPFDVERYSAALDTVIEERRGRIVHDFRLRSEAGTFFWYRLKARPVIGADGE 520

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++R +G   D+TE K + E +L +A  D+LTG+PNR+ F DRL   L  +  D  L+PTV
Sbjct: 521 VIRVVGTIADVTEIKTAEERLLHDAVHDSLTGLPNRELFGDRLDAALAFAGQDQRLKPTV 580

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +V+D+D++K IND +G++ GD +L++L+RR+G LL+  D LAR++G+ F +IL+SE +  
Sbjct: 581 IVLDVDRFKGINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGDEFAVILLSERDPD 640

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHR 687
           +I  FA  +R++IA PI   +REI +T SIG A + +       E+ K+AE+AM  AK  
Sbjct: 641 RILAFAEMIRRAIATPITYADREIFLTVSIGLALYEAGANLKRDEVFKSAEIAMIQAKRN 700

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG+ +E F   + + RSDR+M++ DL  A+E +E+ +++ P++RL D  + G E +++WD
Sbjct: 701 GGDRIEVFRAHMRTDRSDRLMLESDLRKAIERNEMRVLFLPVVRLEDRTVAGFETVLRWD 760

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKD 804
           HPK G I +S F+ +AEE   +  + +F LER A ++ +W+      PPIF   N++S+ 
Sbjct: 761 HPKLGRIPASTFLPLAEESGFVVNLGIFALERTALELAAWQRSLEVEPPIFAACNLSSRQ 820

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           LL ++L   ++ +++++   P  +KL FSES+VM NPE +  +L R+  +G  L L DFG
Sbjct: 821 LLRHDLLHDVKTVLARSGALPGSLKLEFSESLVMENPEYAAQMLARIHDLGAGLCLSDFG 880

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           T  S LSYL   PFDT+K + + +      + AILRSI+ MA  +   I+A+    E D 
Sbjct: 881 TGYSALSYLQRFPFDTIKVDATFVRQIGTGQTAILRSIVRMASELNLAIVAEGCESEADA 940

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + L  +GC+Y        P+      +++
Sbjct: 941 QALAGLGCEYALGPAFGEPMTMLQARQIV 969


>gi|49475243|ref|YP_033284.1| hypothetical protein BH04460 [Bartonella henselae str. Houston-1]
 gi|49238048|emb|CAF27255.1| hypothetical protein BH04460 [Bartonella henselae str. Houston-1]
          Length = 961

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/955 (40%), Positives = 595/955 (62%), Gaps = 3/955 (0%)

Query: 6   SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65
           SLR      F+I++   + + S   AIEP+ ISS D  LDL+    I+      FQ  T 
Sbjct: 3   SLRKIINIIFVIVLSSFVHLTSV-QAIEPVKISSQDAALDLSRAIEIHHTDNSIFQTSTV 61

Query: 66  ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
              DGI  RIEV A + +  G+WAVF+LAN +D Q++RLIV PHYR+  S F  PDLGS 
Sbjct: 62  PGPDGIVWRIEVQAKNEKFSGNWAVFSLANPTDEQIDRLIVAPHYRMAHSGFLWPDLGSA 121

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185
           RI S+TPSEGFSLDR  +++ D+FRIT+NPGA+VTF+ E+++ NLPQIYLW+P  YKD +
Sbjct: 122 RIQSITPSEGFSLDRQSSANFDIFRITLNPGAIVTFVAELNSANLPQIYLWKPEAYKDAI 181

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           NS+TLY GI++G++  LA+ LT+ ++V  + +   T A+AW VL YI IDF FL+K   +
Sbjct: 182 NSYTLYHGILLGISGFLALLLTVLFVVRGTVLFPATAAIAWAVLFYIGIDFNFLNKFFAV 241

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
                 IWRA +E+AL+++L IFLF YL  NRWH    Y        +  L   + Y P 
Sbjct: 242 TLTTQPIWRAGTEVALAATLFIFLFTYLCLNRWHYHFSYGAIVWTITLCGLGAFAVYDPT 301

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
             A IAR++     +     I Y  ++ Y+RA++LIP W+LI  W +G +  I   L+ND
Sbjct: 302 RAAGIARLSFGLTAVLGIILISYFSIRNYDRAIMLIPTWLLISCWCLGAYACIAGYLNND 361

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           IIQPAL GGLVLIV+LI FTV+Q   +   F +GIFSD E+Q LA  G+G+I+WDW++ R
Sbjct: 362 IIQPALSGGLVLIVLLISFTVMQQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNVER 421

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
           DR+   PD+ ++ G  +  ++GP++NW+  +H +DR+ F+ +LD  +  ++GR+   FR+
Sbjct: 422 DRIIVHPDMKSLFGTETHKLNGPMQNWISALHHDDRERFQAVLDIILKNKKGRIDQIFRL 481

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            +    +HW  +R RP    +G I R IG   +IT  KK+ E +L +A  D+LTG+PN+Q
Sbjct: 482 SSGGGYYHWFSLRARPAMQKDGKITRVIGTIVNITNHKKAEERLLYDAIHDSLTGLPNQQ 541

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL     L+  +  +RPTV +ID D +++IN  LGIAVGD VL+ + RR+  L+ F
Sbjct: 542 IFFDRLQNYTSLAKANIKIRPTVFMIDFDNFRQINHKLGIAVGDTVLLIIARRLSRLINF 601

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D L+RLS +RF IIL+SE    KIA FA  + K+I+ PI L E++I ++ SIG  +W+ 
Sbjct: 602 QDTLSRLSADRFAIILLSETEPQKIAAFADRLHKTISAPIALTEKKIMLSPSIGLVTWSE 661

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
           ++ T+ ++L ++ELAM  AK  GGNH+E FR +      +   + +D+  A++ +E+ ++
Sbjct: 662 NRSTAKDILNDSELAMIRAKQMGGNHIEPFRPNFRTLGLEHNTMGQDVHYAIKRNEIKIL 721

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           YHPI+ L D  I+G E +++W HP +GN++ S+F+ I E   ++  +  F+++    D+I
Sbjct: 722 YHPILNLSDGHIIGFETIVEWHHPNYGNLNISDFIQILENEQIVMDLAEFIIDNAVIDLI 781

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           + +++      FI IN+ S +++       +++ + +   +   + +  SE V+  NPE+
Sbjct: 782 NVQEKFFQQSFFISINLPSPEMVHPRFISQLRSTLLRHPLNKGGLMIEISEFVLRKNPEQ 841

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           S   L +++ +G++L LD+FGT  S L+YL   PFD VK + SL++  + K+  IL+SII
Sbjct: 842 SAHFLEQIKALGLNLALDNFGTGYSSLAYLVRYPFDMVKLDRSLISIDSPKKKLILKSII 901

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            MA ++   IIA+ +  E +   L + GC Y+Q + V  P+    ++ L++  FP
Sbjct: 902 NMAIDLNLQIIAEGVENEKEAISLRQEGCKYVQSTLVTKPIAIEELITLVQNHFP 956


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040145|gb|ACT56941.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 963/963 (100%), Positives = 963/963 (100%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60
           MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF
Sbjct: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF 60

Query: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP
Sbjct: 61  QVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180
           DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF
Sbjct: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF 180

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS
Sbjct: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
           KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS
Sbjct: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
           FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK
Sbjct: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD
Sbjct: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ
Sbjct: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG
Sbjct: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG
Sbjct: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF
Sbjct: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL
Sbjct: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR
Sbjct: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN
Sbjct: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900
           PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR
Sbjct: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV
Sbjct: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960

Query: 961 KNT 963
           KNT
Sbjct: 961 KNT 963


>gi|49474006|ref|YP_032048.1| hypothetical protein BQ03650 [Bartonella quintana str. Toulouse]
 gi|49239509|emb|CAF25865.1| hypothetical protein BQ03650 [Bartonella quintana str. Toulouse]
          Length = 961

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/955 (41%), Positives = 599/955 (62%), Gaps = 3/955 (0%)

Query: 6   SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65
           SLR      F+++V F + + S   AIEP+ ISS D  LDL+    IY      FQ  T 
Sbjct: 3   SLRKIINITFVVIVSFFVHLTSV-QAIEPVKISSQDAALDLSKAIEIYHTNNSIFQTSTV 61

Query: 66  ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
              DGI  RIEV A S    G+WAVF+LAN ++ Q++RLIV PHYR+  S F  PDLGS 
Sbjct: 62  PGPDGIVWRIEVQAKSENFSGNWAVFSLANPTNEQIDRLIVAPHYRMAYSGFLRPDLGSA 121

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185
           RI S+TPSEGFSLDR  + +SD+FRIT+NPGAV+TF+ E+++ NLPQIYLW+P  YKD +
Sbjct: 122 RIQSITPSEGFSLDRQSSVNSDIFRITLNPGAVITFVAELNSANLPQIYLWQPEAYKDAI 181

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           NS+TLY GI++G++ LLA+ LT+ +++  + +   T A+AW VL YI IDF FL+K   +
Sbjct: 182 NSYTLYHGILLGISGLLALLLTVLFVIRGTGLFPATAAVAWAVLFYIGIDFNFLNKFFAV 241

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
                 IWRA +E+AL+++  IFLF YL  NRWH +  Y   +    +  L   + Y P 
Sbjct: 242 TLTTQPIWRAGTEVALAATFFIFLFTYLCLNRWHYRFSYGAIAWTIALCGLGAFAIYDPT 301

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
             A IAR++    V+     I Y  ++ Y+RA++LIP W+LI  W  G +  I   L+ND
Sbjct: 302 RVAGIARLSFGLTVVLGIVLISYFSIRSYDRAIMLIPTWLLISFWCFGAYACIAGYLNND 361

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           IIQPAL GGLVLIV+LI FTV+Q   +   F +GIFSD E+Q LA  G+G+I+WDW++ R
Sbjct: 362 IIQPALAGGLVLIVLLISFTVMQQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNVER 421

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
           DR+   PD+ T+ G  +  ++G +RNW+  +H +DR+ F+ +LD  +  ++GR+   FR+
Sbjct: 422 DRIVVHPDMKTLFGTETKKLNGTMRNWISALHYDDRERFQAVLDIILKNKKGRIDQIFRL 481

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            A    +HW  +R RP    +G I R IG   +IT  KK+ E +L +A  D+LTG+PN+Q
Sbjct: 482 SAGGGYYHWFSLRARPAMQKDGKITRVIGSIVNITNHKKAEERLLHDAIHDSLTGLPNQQ 541

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL     L+  +  +RP+V +ID D +++IN  LGIAVGD VL+ + RR+  L+ F
Sbjct: 542 IFFDRLQNYTSLAKANIKVRPSVFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINF 601

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D L+RLS +RF IIL+SE    KIA FA  + K+I+ PI+L E++IT++ SIG  +W+ 
Sbjct: 602 QDTLSRLSADRFAIILLSETEPQKIAAFADHLHKTISAPISLTEKKITLSTSIGLVTWSE 661

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLV 723
           S+ T+ ++L ++ELAM  AK  GGNH+E FR +    D     + +D+  A++ +E+ ++
Sbjct: 662 SRSTAKDILNDSELAMIRAKQMGGNHIEPFRPNFRSLDLGHNTMGQDIHYAIKRNEIKIL 721

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           YHPI+ L D +I+G E +++W HP +GN++ S+F+ I E   ++  +  F+++    D+I
Sbjct: 722 YHPILNLSDGQIIGFETILEWHHPNYGNLNVSDFIKIVENEQIVMDLAQFIIDNAVIDLI 781

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           + +++      FI IN+ S +++       +++ + +   +   + +  SE V+  NPE+
Sbjct: 782 NVQEKFLQQSFFISINLPSAEMIHPRFINQLRSTLLRHPLNKESLMIEISEFVLRKNPEQ 841

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           S   L +++ +G++L LD+FGT  S L+YL   PFD VK + SL++  + K+  +L+SII
Sbjct: 842 SAHFLEQIKTLGMNLALDNFGTGYSSLAYLVRYPFDMVKLDRSLISIDSPKKKLVLKSII 901

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            MA ++   IIA+ +  E +   L + GC Y+Q + V  P+    ++ L++  FP
Sbjct: 902 NMAIDLNLQIIAEGVENEKEAIFLRQEGCKYVQSTLVTKPIAIEELITLVQNHFP 956


>gi|240850093|ref|YP_002971486.1| sensor diguanylate cyclase/phosphodiesterase [Bartonella grahamii
           as4aup]
 gi|240267216|gb|ACS50804.1| sensor diguanylate cyclase/phosphodiesterase [Bartonella grahamii
           as4aup]
          Length = 961

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/933 (42%), Positives = 596/933 (63%), Gaps = 2/933 (0%)

Query: 28  PSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGD 87
            + AIEP+ ISS D  LDL+    I+      FQ  TA   DGI  RIEV A + +  G+
Sbjct: 24  SAQAIEPVKISSQDAALDLSQAIEIHHTNSSIFQTSTAPGPDGIVWRIEVQAKNEKFSGN 83

Query: 88  WAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSD 147
           WAVF+LAN +D Q++RLIV PHYR+  S FF PDLGS RI S+TPSEGFSLDR  +++SD
Sbjct: 84  WAVFSLANPTDEQVDRLIVAPHYRMARSGFFWPDLGSARIQSITPSEGFSLDRQLSANSD 143

Query: 148 VFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLT 207
           +FRIT+NPGAVVTF+ E+++ NLPQIYLW+P  YKD +NS+TLY GI++G++ LLA+ LT
Sbjct: 144 IFRITLNPGAVVTFVAELNSANLPQIYLWQPEAYKDAINSYTLYHGILLGISGLLALLLT 203

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           + ++V  + +   T A+AW VL YI IDF FL+K   +      IWRA +E+AL+++L I
Sbjct: 204 VLFVVRGTGLFPATAAVAWAVLFYIGIDFNFLNKFFAVTLTTQPIWRAGTEVALTATLFI 263

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           FLF YL  NRWH    Y   +       L   + Y P+  A IAR++     +     II
Sbjct: 264 FLFTYLSLNRWHYHFSYGAIAWTIAFCSLGAFAIYDPIRAAGIARLSFGLTAVLGIILII 323

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           Y  ++ Y+RA++LIP W+LI  W IG +  I   L+NDIIQPAL GGLVLIV+LI FTV+
Sbjct: 324 YFSIRSYDRAIMLIPTWLLISFWCIGAYACIAGYLNNDIIQPALAGGLVLIVLLISFTVL 383

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q   +   F +GIFSD E+Q LA  G+G+I+WDW+I RDR+   P++AT+LG    +++G
Sbjct: 384 QQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNIERDRIVVHPNMATLLGTEIHNLNG 443

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           P+RNW+  +H +DR+ F+ +LD  +  ++GR+   FR+ +    +HW  +R RP    +G
Sbjct: 444 PMRNWISALHHDDRERFQAVLDIILKNKKGRIDQIFRLSSGGGYYHWFSLRARPAMQKDG 503

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I R IG   +IT  KKS E +L +A  D+LTG+PN+Q F DRL     L+  +  +RPT
Sbjct: 504 KITRVIGTIVNITNHKKSEERLLHDAIHDSLTGLPNQQIFFDRLQNYTSLAKANIKIRPT 563

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V +ID D +++IN  LGIAVGD VL+ + RR+  L+ F D L+RLS +RF IIL+SE   
Sbjct: 564 VFMIDFDNFRQINRKLGIAVGDTVLLIIARRLNRLINFQDTLSRLSADRFAIILLSETEP 623

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            KIA FA  + K+I+ PI+L E +I ++ SIG  +W+ S+ T+ ++  ++ELAM  AK  
Sbjct: 624 QKIAAFADHLHKTISAPISLSENKIILSTSIGLVTWSESRSTAKDIFNDSELAMIRAKQM 683

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGNH+E FR +      +   +++D+  A++ +E+ ++YHPI+ L D  I+G E +++W 
Sbjct: 684 GGNHIEPFRPNFRTLGLEHNTLEKDVHYAIKRNEIKILYHPILNLSDGHIIGFETIVEWH 743

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP +GN++ S+F+ I E   ++  ++ F+++    D+I+ +++ +    FI IN+ S ++
Sbjct: 744 HPTYGNLNVSDFIKIVENEQIVMNLSQFIIDNAIIDLINVQEKFSQQSFFISINLPSAEM 803

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +       ++A + +      R+ +  SE V+  NPE+S   L +++ +G++L LD+FGT
Sbjct: 804 IHPRFISQLRAALLRHPLHKGRLMIEISEFVLRNNPEQSAHFLEQIKTLGMNLALDNFGT 863

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             S L+YL   PFD VK + SL++  + K+  +L+SII MAK++   IIA+ +  E +  
Sbjct: 864 GYSSLTYLVRYPFDMVKLDRSLISIDSLKKKIVLKSIINMAKDLNLQIIAEGVENEKEAI 923

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            L + GC Y+Q + V  P+    ++ L++  FP
Sbjct: 924 FLRQEGCKYVQSTLVTKPIAIEELITLVQSHFP 956


>gi|121602305|ref|YP_988729.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Bartonella bacilliformis KC583]
 gi|120614482|gb|ABM45083.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Bartonella bacilliformis KC583]
          Length = 958

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/954 (41%), Positives = 605/954 (63%), Gaps = 4/954 (0%)

Query: 6   SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65
           SLR      F  + LF+    S + AIEP+ ISS D  +DL+   +I+      FQ  T 
Sbjct: 3   SLRKIVSVIFFAINLFIHL--SLAQAIEPVKISSQDAAIDLSKAVQIHRTNSSIFQTSTV 60

Query: 66  ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
              DG+  RIEV AS     G+WAVF+LAN ++ Q++RLIV PHYR+  S F  PDLGS 
Sbjct: 61  PGPDGVIWRIEVQASHENFSGNWAVFSLANPTNEQIDRLIVAPHYRIANSGFLWPDLGSA 120

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185
           RI S+TPSEGFSLDR  +++SDVFRIT+NPGAV+TF+ E+S+ NLPQIYLW+P  YKDT+
Sbjct: 121 RIQSITPSEGFSLDRQASTNSDVFRITLNPGAVITFVAELSSENLPQIYLWKPEAYKDTL 180

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           NS+TLY GI++G++ LLA+ LT+ ++V  + +   T A+AW VL YI IDF FL+KL  +
Sbjct: 181 NSYTLYHGILLGISGLLALLLTVLFVVRGTGLFPATAAVAWAVLFYIGIDFNFLNKLFAI 240

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
                 IWRA +E++L+++L IFLF YL  NRWH    Y   + I  +  L   + Y P 
Sbjct: 241 TPITEPIWRAATEVSLAATLFIFLFTYLCLNRWHYHFSYGAIAWIIALCGLGAFAIYDPT 300

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
             A IAR++     +  T  I Y  ++ Y+RA++LIP W+LI  W  G ++ I   L+ND
Sbjct: 301 RAAGIARLSFGLTTILGTILISYFSIRNYDRAIMLIPTWLLIIFWSFGAYICIAGNLNND 360

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           II  AL GGLVLIV+LI FT++Q   +   F +GIFSD ERQ+LA  G+G I+WDW++ R
Sbjct: 361 IIPSALAGGLVLIVLLISFTIMQQTFSNEPFHEGIFSDLERQALAARGAGSIIWDWNVER 420

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
           D +   PD+  I G     ++G + NW+  +H +DR++F+  LD  +  + GR+   FR+
Sbjct: 421 DHIAIHPDMTAIFGKNIPQLNGTMHNWISALHHDDREHFQATLDIILKNKNGRINQIFRL 480

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            + D  +HW+ +R RP    +G + R IG   +IT  KK+ E +L +A  DNLTG+PN+Q
Sbjct: 481 SSGDGYYHWLSLRARPAIQKDGKVTRVIGTIINITNHKKAEERLLYDAIHDNLTGLPNQQ 540

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL +   L+  +  +RPTV++ID D +++IN  LGIA+GD VL+ + RR+  L+  
Sbjct: 541 IFFDRLQSYTTLAKENIKIRPTVLMIDFDNFRQINRKLGIAIGDTVLLIIARRLNRLINV 600

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D L+RLS +RF IIL+SE +  KIA FA  +RK I+ PI+++E++IT++ SIG  +W  
Sbjct: 601 QDTLSRLSADRFAIILLSETDPKKIAAFANHLRKIISAPIDIVEKKITLSTSIGLVTWNE 660

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLV 723
           S+ T+  +L + ELAM HAK +GGNH+E FR +    D     I++D+  A++ +E+ ++
Sbjct: 661 SRPTAKNILNDCELAMIHAKQKGGNHIEPFRPNLRNLDLGYRNIEQDIHYAIKRNEMKIL 720

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           YHPI  L D +I+G EA+++W HP +G+++ S+F+ +AE   ++  +  F+++     +I
Sbjct: 721 YHPIFNLSDGQIIGFEAVLEWHHPNYGHLNVSDFIKVAENEQIVLNLAQFIIDEAVTSLI 780

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           + +++      FI IN+ S D+++ +L   +++ +     +   + +  SE V+  NPE+
Sbjct: 781 NIQEKCFQQSFFISINLPSADMINPDLINQLRSTLLCHPLNEGSLMIEISEFVLRKNPEQ 840

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           S   L +++ +GI+L LD+FGT  S L+YL   PF+ +K + SL++ ++ ++  +LRSII
Sbjct: 841 SAHFLEKIKALGINLALDNFGTGYSSLTYLVRYPFNMIKLDRSLVSINSPEKQLVLRSII 900

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +A ++   IIA+ +  E +   L + GC YIQ + +  P+   +++ L++ RF
Sbjct: 901 NIATDLNLQIIAEGVENEKEAIFLKKEGCQYIQSTIITKPVTVEALISLVQNRF 954


>gi|319898536|ref|YP_004158629.1| hypothetical protein BARCL_0362 [Bartonella clarridgeiae 73]
 gi|319402500|emb|CBI76043.1| conserved membrane protein of unknown function [Bartonella
           clarridgeiae 73]
          Length = 961

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/936 (41%), Positives = 585/936 (62%), Gaps = 2/936 (0%)

Query: 27  SPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRG 86
           + + AIEPI IS  D  +DL+    I+      FQ  TA   DGI  RIEV A S    G
Sbjct: 23  ASAQAIEPIKISPQDIAIDLSKAIEIHHTNNSIFQTSTAPGPDGIIWRIEVQAKSENFSG 82

Query: 87  DWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDS 146
           +WAVFALAN +D Q++RLIV+PHYR+  S F  P+LGS RI S+TPS GFSLDR  N++S
Sbjct: 83  NWAVFALANPTDEQIDRLIVIPHYRMAHSGFLWPNLGSVRIQSITPSAGFSLDRQTNANS 142

Query: 147 DVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206
           D+FRIT+NPG V+TF+ E+S+ NLPQIYLW+P  YKDT+NS+TLY GI++G++ LLA+ L
Sbjct: 143 DIFRITLNPGTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGILLGISGLLALLL 202

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
           TI ++V  +S+   T A+AW VL YI IDF F +K+  +      IWRA +E+AL+++L 
Sbjct: 203 TILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKIFAITPITEPIWRAGTEVALAATLF 262

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           IFLF YL  NRWH    Y     I  +  L   + Y P   A IAR++     +     I
Sbjct: 263 IFLFTYLCLNRWHYHFSYGAIIWIISLCGLGAFAIYDPSRAAGIARLSFGLTTILGIILI 322

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
            Y  ++ Y+RA++LIP W+LI  W +  +  I   LDNDI+QPAL GGLVLIV+LI F V
Sbjct: 323 GYFSIRRYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVQPALAGGLVLIVLLISFLV 382

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q   +   F +GIFSD ERQ LA  G+G I+WDW++ RDR+   PD+ T+ G  +  ++
Sbjct: 383 MQQTFSNDAFHEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDMTTLFGPETCKLN 442

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G + +W+  +H +DR+ F+ +L+  + +++GR+   FR+ +    +HW  +R RP    +
Sbjct: 443 GTMSDWISALHYDDRERFQAVLNIILEHKKGRIDQIFRLSSGGGHYHWFSLRARPAIQKD 502

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G I R IG   +IT  KK+ E +L +A  D+LTG+PN+Q FLDRL     L+  +  +RP
Sbjct: 503 GKITRVIGSIVNITNHKKAEERLLYDAIHDSLTGLPNQQIFLDRLQNYASLAKANIKIRP 562

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           T+ +ID D +++IN  LGIAVGD VL+ + RR+  L+   D L+RLS +RF IIL+SE  
Sbjct: 563 TIFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSADRFAIILLSETE 622

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             KIA FA  + K+I+ PI L ++ I ++ASIG  +W+ +++T+  +  ++ELAM HAK 
Sbjct: 623 PKKIAMFANHLHKTISAPITLEKKTIMLSASIGLVTWSDNRLTAQNIFNDSELAMIHAKQ 682

Query: 687 RGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GGNH+E FR +    D     I +D+  A++ +E+ ++YHPI+ L D +I+G E +++W
Sbjct: 683 MGGNHIEPFRPNFRTLDLEHNNINKDIHHAIKRNEIKILYHPILNLSDGQIIGFETIVEW 742

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  GN++  +F+ I E   ++  +  F+++    D+I+ +++    P FI IN+ S +
Sbjct: 743 HHPNHGNLNVHDFIKIVESEQLVMDLVQFIIDHAIVDLINIQEKCTKHPFFISINLPSAE 802

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           ++  +    +++ + +   +  R+ +  SE V+  NPE+S     +++ +G++L LD+FG
Sbjct: 803 MIHPDFISQLRSTLLRNPVNKGRLMIEISELVLRKNPEQSAHFFEQIKSLGMNLALDNFG 862

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           T  S L+YL   PFD VK + SL++  + K+  +L+SII MA ++   IIA+ +  E + 
Sbjct: 863 TGYSSLTYLVRYPFDMVKLDRSLISIDSPKKKLVLKSIIRMATDLNLQIIAEGVENEKEA 922

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
             L + GC Y+Q + V  P+    ++ L++  F   
Sbjct: 923 IFLRQEGCKYVQSTIVTKPIAIEELVALVQNHFSHT 958


>gi|319406870|emb|CBI80505.1| conserved membrane hypothetical protein [Bartonella sp. 1-1C]
          Length = 960

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/948 (40%), Positives = 585/948 (61%), Gaps = 2/948 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
            L++++ L   +S + AIEPI IS  D  LDL+    I+      FQ  TA   DGI  R
Sbjct: 11  VLVIIINLFVCLSSARAIEPIKISPQDIALDLSKAIEIHHTNNPIFQTSTAPGPDGIIWR 70

Query: 75  IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134
           IEV A S    G+WAVF+LAN +D Q++RLIVVPHYR+  S F  PDLGS RI S+TPS 
Sbjct: 71  IEVQAKSENFSGNWAVFSLANPTDEQIDRLIVVPHYRMAHSGFLWPDLGSVRIQSITPSA 130

Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194
           GFSLDR  N+++D+FRIT+NP  V+TF+ E+S+ NLPQIYLW+P  YKDT+NS+TLY GI
Sbjct: 131 GFSLDRQTNANADIFRITLNPNTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGI 190

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           ++G++ LLA+ LTI ++V  +S+   T A+AW VL YI IDF F +KL  +      IWR
Sbjct: 191 LLGISGLLALLLTILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKLFAITPITEPIWR 250

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
           A +E+AL+++L  FLF YL  NRWH    Y     I     L   + Y P   A IAR++
Sbjct: 251 AGTEVALAATLFTFLFTYLCLNRWHYHFSYGAIIWIISFCGLGAFAIYDPTKAAGIARLS 310

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
                +     I Y  ++ Y+RA++LIP W+LI  W +  +  I   LDNDI+  AL GG
Sbjct: 311 FGLTTILGIILISYFSIRRYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVPQALAGG 370

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LVLIV+LI F V+Q   +   F +GIFSD ERQ LA  G+G I+WDW++ RDR+   PD+
Sbjct: 371 LVLIVLLISFLVMQQTFSNDAFHEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDM 430

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            ++ G  +  ++G + +W+  +H +DR+ F+ +L+  + +++GR+   FR+ +    +HW
Sbjct: 431 TSLFGAYTRKLNGTMSDWISALHYDDRERFQAVLNIILEHKKGRIDQIFRISSGGGHYHW 490

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +R RP    +G I R IG   +IT  KK+ E +L +A  D+LTG+PN+Q FLDRL   
Sbjct: 491 FSLRARPAIQKDGKITRVIGSILNITNHKKAEERLLHDAIHDSLTGLPNQQIFLDRLQNY 550

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
             L+  +  ++PT+ +ID D +++IN  LGIAVGD VL+ + RR+  L+   D L+RLS 
Sbjct: 551 SSLAKANIKIKPTIFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSA 610

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +RF IIL+SE    KIA FA  + K+I+ PI L E+ IT++ SIG  +W+ +K T+  + 
Sbjct: 611 DRFAIILLSETEPKKIAMFANHLHKTISAPITLEEKTITLSTSIGLVTWSDNKSTAQNIF 670

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            ++ELAM HAK  GGNH+E FR S      +   I +D+  A++ +E+ ++YHPI+ L D
Sbjct: 671 NDSELAMIHAKQMGGNHIEPFRPSFRTLDIEHNNINKDIHHAIKRNEIKILYHPILNLSD 730

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I+G E +++W HP  GN++  +F+ I E   ++  +  F+++R   D+I+ +++    
Sbjct: 731 GNIIGFETIVEWQHPNHGNLNIHDFIKIVESEQLVMDLVQFIVDRALADLINIQEKCAKH 790

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P FI IN+ S +++  +    +++ + +   S  R+ +  SE V+  NPE+S      ++
Sbjct: 791 PFFISINLPSAEMIHPDCIRQLRSALLRNPVSKGRLMIEISELVLRKNPEQSAHFFEEIK 850

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912
            +G++L LD+FGT  S L+YL   PFD VK + SL++  + K+  +L+SII MA ++   
Sbjct: 851 ALGMNLALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSHKKKLVLKSIIRMATDLNLQ 910

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           IIA+ +  E +   L + GC Y+Q + V  P+    ++ L++  F   
Sbjct: 911 IIAEGVENEKEAIFLRQEGCKYVQSTTVTKPIAVEELIALVQNHFSHT 958


>gi|163867886|ref|YP_001609090.1| hypothetical protein Btr_0661 [Bartonella tribocorum CIP 105476]
 gi|161017537|emb|CAK01095.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 961

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/959 (41%), Positives = 603/959 (62%), Gaps = 3/959 (0%)

Query: 6   SLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTA 65
           SLR       +I+V F + + S + AIEP+ ISS D VLDL+    I+      F+  TA
Sbjct: 3   SLRKIINIICIIVVSFFVHLTS-AHAIEPVKISSQDAVLDLSKAIEIHHTNNSIFKTSTA 61

Query: 66  ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
              DGI  RIEV A S +  G+WAVF+LAN +D Q++RLIV PHYR+  S FF PDLGS 
Sbjct: 62  PGPDGIVWRIEVQAKSEKFSGNWAVFSLANPTDEQVDRLIVAPHYRMARSGFFWPDLGSA 121

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTV 185
           RI S+TPSEGFSLDR P+++SD+F IT+NPGAVVTF+ E+++ NLPQIYLW+P  YKD++
Sbjct: 122 RIQSITPSEGFSLDRQPSTNSDIFHITLNPGAVVTFVAELNSENLPQIYLWQPEAYKDSI 181

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           NS+TLY GI++G++ LLA+ LT+ ++V  + +   T A+AW VL YI IDF FL+K   +
Sbjct: 182 NSYTLYHGILLGISGLLALLLTVLFVVRGTGLFPATAAVAWSVLFYIGIDFNFLNKFFAV 241

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
                 IWRA +E+AL+++L IFLF YL+ NRWH    Y   + I     L   + Y P+
Sbjct: 242 TLTTQPIWRASTEVALAATLFIFLFTYLNLNRWHYHFNYGAIAWIIAFCSLGAFAIYDPI 301

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
             A IAR++     +     IIY  ++ Y+RA++LIP W+LI  W +G    I   L+ND
Sbjct: 302 RAAGIARLSFGLTAVLGILLIIYFSIRSYDRAIMLIPTWLLISFWCVGAHACIKGHLNND 361

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           IIQPAL GGLVLIV+LI FTV+Q   +   F +GIFSD E+Q LA  G+G+I+WDW+I R
Sbjct: 362 IIQPALAGGLVLIVLLISFTVLQQTFSNDAFHEGIFSDLEQQVLAAKGAGNIIWDWNIER 421

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
           DR+   P++ T+ G    +++G +RNW+  +H +DR+ F+ +LD  +  ++GR+   FR+
Sbjct: 422 DRIVVHPNMTTLFGTEIHNLNGTMRNWISALHYDDRERFQAVLDIILKNKKGRIDQIFRL 481

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            +    +HW  +R RP    +G I R IG   +IT  KKS E +L +A  D+LTG+PN+Q
Sbjct: 482 SSGGGYYHWFSLRARPAMQKDGKITRIIGTIVNITNHKKSEERLLHDAIHDSLTGLPNQQ 541

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL     L+  +  +RPTV +ID+D +++IN  LGIAVGD VL+ + RR+  L+ F
Sbjct: 542 IFFDRLQNYTSLAKANIKIRPTVFMIDLDNFRQINRKLGIAVGDTVLLIIARRLNRLINF 601

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D L+RLS +RF IIL+SE  S KIA FA  + K+I+ PI+L E +I ++ SIG  +W+ 
Sbjct: 602 QDTLSRLSADRFAIILLSETESEKIAAFADHLHKTISAPISLSENQIILSTSIGLVTWSE 661

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723
           S+ T+ ++  ++ELAM  AK  GGNH+E FR +          +++D+  A++  E+ ++
Sbjct: 662 SRSTAKDIFNDSELAMIRAKQMGGNHIEPFRPNFRTLGLEQNILEKDIHYAIKRHEMKIL 721

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           YHPI+ L D  I+G E +++W HP +G ++ S+F+ I E   ++  ++ F+++    D+I
Sbjct: 722 YHPILNLSDGHIIGFETIVEWHHPTYGKLNISDFIKIVENEQIVMDLSQFIIDNAIVDLI 781

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +  ++      FI IN+ S +++       ++A + +      R+ +  SE V+  NPE+
Sbjct: 782 NVEEKFFQQSFFISINLPSAEMIHPRFISQLRAALLRHPLHKGRLMIEISEFVLRNNPEQ 841

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           S   L +++ +G++L LD+FGT  S L+YL   PFD VK + SL++  + K+  +L+SII
Sbjct: 842 SAHFLEQIKTLGMNLALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSLKKKLVLKSII 901

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            MA ++   IIA+ +  E +   L + GC Y+Q + V  PL    ++ L++  FP    
Sbjct: 902 NMATDLNLQIIAEGVENEKEAIFLRQEGCKYVQSTLVTKPLAIEELITLVQSHFPYKTR 960


>gi|319403858|emb|CBI77444.1| conserved membrane hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 960

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/948 (41%), Positives = 584/948 (61%), Gaps = 2/948 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
            L++++ L   +S   AIEPI IS  D  LDL+    I+      FQ  TA   DGI  R
Sbjct: 11  VLVIIISLFVCLSSVQAIEPIKISPQDIALDLSKAIEIHHTNNPIFQTSTAPGPDGIIWR 70

Query: 75  IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134
           IEV A S    G+WAVF+LAN +D Q++RLIVVPHYR+  S F  PDLGS RI S+TPS 
Sbjct: 71  IEVQAKSENFSGNWAVFSLANPTDEQIDRLIVVPHYRMAHSGFLWPDLGSVRIQSITPSA 130

Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGI 194
           GFSLDR  N+++D+FRIT+NP  V+TF+ E+S+ NLPQIYLW+P  YKDT+NS+TLY GI
Sbjct: 131 GFSLDRQTNANADIFRITLNPNTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGI 190

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           ++G++ LLA+ LTI ++V  +S+   T A+AW VL YI IDF F +KL  +      IWR
Sbjct: 191 LLGISGLLALLLTILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKLFAITPITEPIWR 250

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
           A +E+AL+++L  FLF YL  NRWH    Y     I     L   + Y P   A IAR++
Sbjct: 251 AGTEVALAATLFTFLFTYLCLNRWHYHFSYGAIIWIISFCGLGAFAIYDPTRAAGIARLS 310

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
                +     I Y  ++ Y+RA++LIP W+LI  W +  +  I   LDNDI+  AL GG
Sbjct: 311 FGLTTILGIILISYFSIRKYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVPQALAGG 370

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LVLIV+LI F V+Q   +   F +GIFSD ERQ LA  G+G I+WDW++ RDR+   PD+
Sbjct: 371 LVLIVLLISFLVMQQTFSNDAFHEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDM 430

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            ++ G  +  ++G + +W+  +H +DR+ F+ +L+  +  + GR+   FR+ +    +HW
Sbjct: 431 TSLFGKHARKLNGTMNDWILALHYDDRERFQAVLNIILENKTGRIDQIFRISSGGGHYHW 490

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +R RP    +G I R IG   +IT  KK+ E +L +A  D+LTG+PN+Q FLDRL   
Sbjct: 491 FSLRARPAIQKDGKITRVIGSILNITNHKKAEERLLHDAIHDSLTGLPNQQIFLDRLQNY 550

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
             L+  +  ++PT+ +ID D +++IN  LGIAVGD VL+ + RR+  L+   D L+RLS 
Sbjct: 551 SSLAKANIKIKPTIFMIDFDNFRQINHKLGIAVGDTVLLIIARRLSRLINLQDTLSRLSA 610

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +RF IIL+SE    KIA FA  + K+I+ PI L E+ IT++ SIG A+W+ +K T+  + 
Sbjct: 611 DRFAIILLSETEPKKIAMFANHLLKTISAPITLEEKTITLSTSIGLATWSDNKSTAQNIF 670

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            ++ELAM HAK  GGNH+E FR S    D     IK+D+  A+E +E+ ++YHPI+ L D
Sbjct: 671 NDSELAMIHAKQMGGNHIEPFRPSFRTLDLEHNNIKKDIHHAIERNEIKILYHPILNLSD 730

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I+G E +++W HP  GN++  +F+ I E   +I  +  F+++R   D+I+ +++    
Sbjct: 731 GNIIGFETIVEWQHPNHGNLNIHDFIKIVESEQLIMDLVQFIVDRALVDLINIQEKCAKH 790

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P FI IN+ S +++  +    +++ + +   S  R+ +  SE V+  NPE+S      ++
Sbjct: 791 PFFISINLPSAEMIHPDCIRQIRSALLRNPVSKGRLMIEISELVLRKNPEQSAHFFEEIK 850

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912
            +G++L LD+FGT  S L+YL   PFD VK + SL++  + K+  +L+SII MA ++   
Sbjct: 851 ALGMNLALDNFGTGYSSLTYLVRYPFDMVKLDRSLISIDSHKKKLVLKSIIRMATDLNLQ 910

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           IIA+ +  E +   L + GC Y+Q + V  P+    ++ L++  F   
Sbjct: 911 IIAEGVENEKEAIFLRQEGCKYVQSTTVTKPIAVEELIALVQNHFSHT 958


>gi|319408226|emb|CBI81879.1| conserved membrane hypothetical protein [Bartonella schoenbuchensis
           R1]
          Length = 963

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/938 (40%), Positives = 577/938 (61%), Gaps = 3/938 (0%)

Query: 28  PSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGD 87
            + AIEPI IS  D  +DL+    I+      FQ  TA   DGI  RIEV A++    G 
Sbjct: 24  SAQAIEPIKISPQDTAIDLSKAIEIHHTNNPIFQTSTAPGPDGIIWRIEVQANNENFSGS 83

Query: 88  WAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSD 147
           WAVFALAN +D Q++RLIV PHYR+  S  F PDLGS RI S+TP+EGFSLDR  +++SD
Sbjct: 84  WAVFALANPTDEQIDRLIVAPHYRIANSGLFWPDLGSTRIQSITPNEGFSLDRQASTNSD 143

Query: 148 VFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLT 207
           +FRIT+NPGAV+TF+ E+++ NLP+IYLW+P  YKDT+NS+TLY GI++G++ LLA+ LT
Sbjct: 144 IFRITLNPGAVITFVAELNSANLPKIYLWKPEAYKDTINSYTLYHGILLGISGLLALLLT 203

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           + ++V  + +   T A+AW +L YI IDF FL+KL  +      IWRA +EIAL+++L I
Sbjct: 204 VLFVVRGTGLFPATAAVAWAILFYIGIDFNFLNKLFAITPTIEPIWRASTEIALAATLFI 263

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           FLF YL  NRWH    Y     I  +  L   + Y P   A IAR++     +     I 
Sbjct: 264 FLFTYLCLNRWHYHFSYGAIIWIIALCGLGTFAIYDPTRAAGIARVSFGLTTILGIILIS 323

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           Y  ++ Y+RA++LIP W+LI  W I  +  I   LDNDIIQPAL GGLVL V+LI FT++
Sbjct: 324 YFSIRRYDRAIMLIPTWLLISFWSIAAFACIEGYLDNDIIQPALAGGLVLTVLLISFTIM 383

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q   +   F +GIFSD E+Q+LA  G+G+I+WDWD+ RDR+   PD+  + G  +  ++G
Sbjct: 384 QQTFSHDAFYEGIFSDLEQQALAAKGAGNIIWDWDVERDRIVVHPDMTPLFGTEAHKLNG 443

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSN 506
            + +W+  +H +DR++F  +LD  +  ++GR+   FR+      +HW  +R  P +   +
Sbjct: 444 TMNDWISALHHDDREHFHAMLDIILKNKKGRIDQIFRLSCGGGHYHWFSLRASPAIVKKD 503

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G + R IG   +IT  KK+ E +L NA  DNLTG+PN+Q FLDRL   + L+  +  ++P
Sbjct: 504 GKVTRVIGTIINITNHKKAEERLLHNAIYDNLTGLPNKQIFLDRLQHYISLAKVNIKIKP 563

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           TV++ID D +++IN  LGIAVGD VL+ + RR+  L+   D L RL  +RF IIL+SE  
Sbjct: 564 TVLMIDFDNFRQINHKLGIAVGDTVLLIIARRLSRLINTQDTLTRLFADRFAIILLSEIE 623

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             KIA F   + K+I+ PI+L E+EI+++ SIG  +W   ++ + ++  ++ELAM  AK 
Sbjct: 624 PQKIAAFVNHLHKTISAPISLAEQEISLSTSIGLVTWNECRLNAKDIFHDSELAMIQAKQ 683

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GGN +  FR +          I+ D+  A++++E+ ++YHPI  L D +I+G EA+++W
Sbjct: 684 MGGNDIVPFRPNFRTLGLKHNNIEHDIHSAIKHNEIKILYHPIFNLSDGQIIGFEAIVEW 743

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  GN++ ++F+ I E   +   +  F+++    D+I  + +    P FI IN+ S +
Sbjct: 744 HHPYHGNLNVNDFIKIVESEQITTDLAQFIIDNAIADLIKIKKKCAQQPFFISINLPSVE 803

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           ++       +++ + +   +   + +  SE V+  NPE+S   L +++ +G++L LD FG
Sbjct: 804 MIHPNFISQLRSTLLRNPLNKGHLMIEVSEFVLRKNPEQSAHFLEQIKALGMNLALDHFG 863

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           T  S L+YL   PFD VK + S ++  + K+  +L+SII MA ++   IIA+ +  E   
Sbjct: 864 TGYSSLAYLVRYPFDMVKLDRSFVSLDSPKKKLVLKSIINMATDLNLQIIAEGVEDEKVA 923

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             L + GC YIQ + +  P+    ++ L++ +F   K+
Sbjct: 924 LFLRQEGCKYIQSTIITKPITAEELITLIQNQFSYKKS 961


>gi|319405299|emb|CBI78913.1| conserved membrane hypothetical protein [Bartonella sp. AR 15-3]
          Length = 957

 Score =  798 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/940 (41%), Positives = 587/940 (62%), Gaps = 2/940 (0%)

Query: 22  LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASS 81
           L   +S + AIEPI IS  D  LDL+    I+      FQ  TA   DGI  RIEV A S
Sbjct: 18  LFVCLSSAQAIEPIKISPQDIALDLSKAIEIHRTNNPIFQTSTAPGPDGIIWRIEVQAKS 77

Query: 82  IRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRI 141
               G+WAVF+LAN +D Q++RLIVVPHYR+  S    PDLGS RI S+TPS GFSLDR 
Sbjct: 78  ENFSGNWAVFSLANPTDEQIDRLIVVPHYRMAHSGLLWPDLGSVRIESITPSAGFSLDRQ 137

Query: 142 PNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASL 201
            N+++D+FRIT+NPG V+TF+ E+S+ NLPQIYLW+P  YKDT+NS+TLY GI++G++ L
Sbjct: 138 TNANADIFRITLNPGTVITFVAELSSKNLPQIYLWQPEAYKDTINSYTLYHGILLGISGL 197

Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
           LA+ LTI ++V  +S+   T A+AW VL YI IDF F +KL  +      IWRA +E+AL
Sbjct: 198 LALLLTILFVVRGTSLFPATAAVAWAVLFYIGIDFNFWNKLFAITPITEPIWRAGTEVAL 257

Query: 262 SSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLY 321
           +++L IFLF YL  NRWH    Y     I  +  L   + Y P   A IAR++     + 
Sbjct: 258 AATLSIFLFTYLCLNRWHYHFSYGAIIWIISLCGLGAFAIYDPTRAAGIARLSFGLTAIL 317

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
               I Y  ++ Y+RA++LIP W+LI  W +  +  I   LDNDI+QPAL GGLVLIV+L
Sbjct: 318 GIILISYFSIRRYDRAIMLIPTWLLISFWSLEAYACIIGYLDNDIVQPALAGGLVLIVLL 377

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I F V+Q   +   F +GIFSD ERQ LA  G+G I+WDW++ RDR+   PD+A I G  
Sbjct: 378 ISFLVMQQTFSNDAFYEGIFSDLERQVLAARGAGSIIWDWNVERDRIVVHPDMAAIFGAN 437

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  ++G + +W+  +H +DR+ F+ +L+  + +++GR+   FR+ +    +HW  +R RP
Sbjct: 438 NCKLNGTMSDWISALHYDDRERFQAVLNIILAHKKGRIDQIFRLSSGGGHYHWFSLRARP 497

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               +G I R IG   +IT  KK+ E +L +A  D+LTG+PN+Q FLDRL     L+  +
Sbjct: 498 AIQKDGKITRVIGSIVNITNHKKAEERLLYDAIHDSLTGLPNQQIFLDRLQNYSSLAKAN 557

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             ++PT+ +ID D +++IN  LGIAVGD VL+ + RR+  L+   D L+RLS +RF IIL
Sbjct: 558 IKIKPTIFMIDFDNFRQINRKLGIAVGDTVLLIIARRLSRLINLQDSLSRLSADRFAIIL 617

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +SE    KIA FA  + K+I+ PI L E+ IT+++SIG  +W+ +K T+  +  ++ELAM
Sbjct: 618 LSETEPQKIAMFANHLHKTISAPITLEEKTITLSSSIGLVTWSDNKSTAQNIFNDSELAM 677

Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            HAK  GGNH+E FR +    +     I +D+  A++ +E+ ++YHPI+ L D +I+G E
Sbjct: 678 IHAKQMGGNHIEPFRPNFRTLNLEHNNINKDIHHAIKRNEIKILYHPILNLSDGQIIGFE 737

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            +++W HP  GN++  +F+ I E   ++  +  F+++R   D+I+ +++    P FI IN
Sbjct: 738 TIVEWHHPNHGNLNVHDFIKIVESEQLVMDLVEFIVDRAIIDLINIQEKCAKNPFFISIN 797

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + S +++  +    +++ + +   S  R+ +  SE V+  NPE+S     +++ +G++L 
Sbjct: 798 LPSAEMIHPDFISQLRSSLLRNPVSKGRLMIEISELVLRKNPEQSAHFFEQIKALGMNLA 857

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           LD+FGT  S L+YL   PFD VK + SL++  +  +  +L+SII MA ++   IIA+ + 
Sbjct: 858 LDNFGTGYSPLTYLVRYPFDMVKLDRSLISIDSHNKKLVLKSIIRMATDLNLQIIAEGVE 917

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            E +   L + GC Y+Q + V  P+    ++ L++  F L
Sbjct: 918 NEKEAIFLRQEGCKYVQSTTVTKPIAVEELIALVQNHFSL 957


>gi|218509971|ref|ZP_03507849.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 745

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/745 (52%), Positives = 532/745 (71%), Gaps = 2/745 (0%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276
           ML  T A+AW VLGYI +DFGFL KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ N
Sbjct: 1   MLPATAALAWAVLGYICVDFGFLGKLISVASADQRIWRACAEVALASSFVIFLFTYLNLN 60

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           RWHA +GY T + +  +A+LF ++ Y P + A IAR++ A         IIY G   Y+R
Sbjct: 61  RWHAHLGYATLAWVLGLALLFGVAIYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDR 120

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+LL+PAW L  +W  G W+ +T RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F
Sbjct: 121 AILLVPAWALTLVWLFGAWLTVTGRLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAF 180

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            QG+FSD ERQSLA+ GSGD+VWDWD+ RDRV T PD++  LGL+ G+MHG  RNWLP +
Sbjct: 181 QQGLFSDLERQSLALTGSGDMVWDWDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRL 240

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +DRD FR  LD  + +RRGRL +EFR+RA D  FHW++IR RP+  SNG+I+R +G  
Sbjct: 241 HPDDRDRFRATLDVLLEHRRGRLNHEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTI 300

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TEQK S+E +L +A  DNLTG+PNRQ FLDRL  +L L+   + LRPTVMVIDID+Y
Sbjct: 301 VDVTEQKNSVERLLQDALHDNLTGLPNRQVFLDRLQAVLALAPGGETLRPTVMVIDIDRY 360

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND LG+A GD++L++LTRR+  L+K  D LARL+G++FG+IL+SE+N  K+ADFA A
Sbjct: 361 KLVNDALGVAAGDNILIALTRRLRRLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADA 420

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K+I +PIN   REI +TASIG ASW   + ++S +L +AELAMY AK  GGN VE F+
Sbjct: 421 VSKAIMVPINFSNREIILTASIGLASWVDRQESASGLLSDAELAMYRAKRAGGNRVEPFQ 480

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +      DR+ ++ DL  A+E  EL +VY PI RL D E+ G EAL++W+HPK G I  
Sbjct: 481 PAFRDFGTDRLQLETDLRRAIERRELSMVYQPIARLEDVEVAGFEALMRWEHPKRGTIPP 540

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           SEF+ IAE   +I  + +F LE+   D++SW++Q    PIF+ IN++S  LL+NEL + +
Sbjct: 541 SEFIPIAEASDLIGPLGMFALEQATNDLMSWQNQTGELPIFVSINLSSVQLLNNELYDDV 600

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +++++KT  +PSR+KL  +ES+VM NPE++RL+L +L++ GI L LDDFGT  S L+YL 
Sbjct: 601 RSVLAKTHCAPSRLKLELTESMVMENPEQARLVLQKLKEAGIGLALDDFGTGYSSLAYLT 660

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             PFDT+K + +L+   ++K+  +LRS+I MA+ +E  ++A+ I    D  EL +MGC Y
Sbjct: 661 RFPFDTIKLDKALVRDGSDKKATVLRSVIAMARELEMKVVAEGIESNEDAIELAKMGCSY 720

Query: 935 IQDSHVASPLGFNSILKLLKERFPL 959
            Q      P+   S+L+LL++RFPL
Sbjct: 721 GQSYLFGPPIPSESVLRLLRDRFPL 745


>gi|315122076|ref|YP_004062565.1| sensory box/GGDEF family protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495478|gb|ADR52077.1| sensory box/GGDEF family protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 965

 Score =  772 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 710/961 (73%), Positives = 821/961 (85%), Gaps = 13/961 (1%)

Query: 10  HFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADID 69
             +  F ILV+F LWM  PSFAIEPI ISSSD  LDLT++T IYVN+GE+FQVFTAADID
Sbjct: 11  ILKNNFSILVMFFLWMALPSFAIEPIKISSSDSALDLTAVTEIYVNRGENFQVFTAADID 70

Query: 70  GISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIIS 129
           GISRRIEVSASSI+H+GDWAVFALANTSDSQLERLIVVPH+RLVGS FF PDLGSRRIIS
Sbjct: 71  GISRRIEVSASSIKHQGDWAVFALANTSDSQLERLIVVPHFRLVGSRFFLPDLGSRRIIS 130

Query: 130 VTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFT 189
           VTPSEGFSLDR+PN D+DVFRITINPGA+VTF+MEI++ NLPQIYLWEP+FYKDTVNSFT
Sbjct: 131 VTPSEGFSLDRVPNPDADVFRITINPGAIVTFVMEITSSNLPQIYLWEPDFYKDTVNSFT 190

Query: 190 LYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGE 249
           LY+GIIIG+ASLLA+FLT+ YMVN+SSML+  F MAWVVLGYI IDFGF+SKL+N PSGE
Sbjct: 191 LYQGIIIGIASLLAVFLTVLYMVNKSSMLVSAFTMAWVVLGYICIDFGFISKLINSPSGE 250

Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309
           L IWRACSE+ALS SL+IFLF Y + NRW  K+G+ITF+ I C+AILFC+SFYYP +TA 
Sbjct: 251 LPIWRACSEMALSLSLLIFLFTYFNLNRWRTKLGHITFAWITCLAILFCISFYYPSLTAG 310

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
           IAR++   IVL  T  I Y G KGYER++LLIPAW+LI IW IG WMAITKRLDNDIIQ 
Sbjct: 311 IARLSFGGIVLLGTCCIFYLGKKGYERSILLIPAWMLIVIWSIGSWMAITKRLDNDIIQS 370

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           AL GGLVLI++LIGFTVIQHVL +G  SQGIF D E QSLAVLGSGDI+W+WD+V D+VT
Sbjct: 371 ALDGGLVLIILLIGFTVIQHVLTSGNISQGIFPDVECQSLAVLGSGDIIWNWDVVHDKVT 430

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
           TTPDIAT LGLA+GSMHG IRNWLP+IH++D+D+FRTILDSF+ YRRGRL++EFR+ A D
Sbjct: 431 TTPDIATTLGLAAGSMHGAIRNWLPHIHLDDQDSFRTILDSFLEYRRGRLKHEFRIFAKD 490

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            QFHW+++RIRP+ N NG+ILR IGIANDIT QKKS++GIL NA QDNLTGIPN QSFLD
Sbjct: 491 GQFHWIMLRIRPVLNVNGEILRCIGIANDITVQKKSIDGILYNALQDNLTGIPNLQSFLD 550

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RLTTI+ LS  D+NL P VMV+DIDKYK+IN  LGIA+GDDVLV LTRRI  LL+  D L
Sbjct: 551 RLTTIISLSV-DNNLHPAVMVLDIDKYKQINRTLGIAIGDDVLVVLTRRIRSLLRSQDTL 609

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARLSG+RFGIIL SE +  KIADFA+ + K++ MPI+LL REI VTASIGF SWTSSKIT
Sbjct: 610 ARLSGDRFGIILTSEKDRTKIADFAMTVSKAVVMPIHLLNREIIVTASIGFVSWTSSKIT 669

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           S+EMLKNAELAMYHAK+RGGN +ESFR S  SFRSD++ IKEDL  A+ NSELYLVY+PI
Sbjct: 670 STEMLKNAELAMYHAKNRGGNCIESFRPSLISFRSDKLRIKEDLSRAIINSELYLVYNPI 729

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           IRL DEEIVGLEAL+QW+HPK+GNI SS+FM IAEEL +IK+INLFMLERIA DII+WRD
Sbjct: 730 IRLADEEIVGLEALLQWNHPKFGNIPSSKFMSIAEELSIIKSINLFMLERIAADIINWRD 789

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           QANMPPIF+ INI S  LLD+ LCE +QA+ISKTL SPS IKL+FSES+VM NPE+S LL
Sbjct: 790 QANMPPIFVSINIGSTVLLDDSLCEYIQAIISKTLCSPSGIKLAFSESIVMENPEKSCLL 849

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907
           L +LRK+GI LTLDDFGTKCSLLSYLGY+PFD +KFNGSLMTGST KRI++LRS++ +AK
Sbjct: 850 LDKLRKMGIGLTLDDFGTKCSLLSYLGYMPFDAIKFNGSLMTGSTTKRISMLRSLVSIAK 909

Query: 908 NIETTIIA-----KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            +E  IIA     + I  +     L RMGCDYIQ SH+ SPL  +SILKLLK+RFPLVKN
Sbjct: 910 KLEVMIIAKDIYGE-IDTKE----LARMGCDYIQGSHITSPLRSSSILKLLKDRFPLVKN 964

Query: 963 T 963
           T
Sbjct: 965 T 965


>gi|154251136|ref|YP_001411960.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155086|gb|ABS62303.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Parvibaculum lavamentivorans DS-1]
          Length = 991

 Score =  747 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/966 (25%), Positives = 435/966 (45%), Gaps = 30/966 (3%)

Query: 22  LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT------------AADID 69
           +    + S A++ + +     V+DLT     +   G    +              A D+D
Sbjct: 24  MTLAPTMSRALDAVAMDDKRPVVDLTPYVENFAAAGRKLTIEPPSNGTADIDTAPARDMD 83

Query: 70  GISR---------RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
           G             I +S       G W   AL N S+  + RL+V          FF P
Sbjct: 84  GEENADAASMEDGSIVLSDGEGNASGMWRAVALRNRSEDLVTRLLVADRRSDGLLGFFWP 143

Query: 121 DL--GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEP 178
                  R ++    +             VF +T NP   +T  +         IYLW  
Sbjct: 144 QPHIEIGRAVTAGGEDPIPAPAEAWPGFAVFSLTGNPETSMTVALHAEEETDAGIYLWHA 203

Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238
             +       +L  G ++ V +  AI++    ++   +    T A+       +  +FG+
Sbjct: 204 EAWSSFTRRLSLIEGGMLAVVAAFAIYMAALGVLTGVAAARATAALLGAGFLVLLGEFGY 263

Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC 298
           L+ + +L     L++R  +     S++ +    +L   R  A +  ++      +     
Sbjct: 264 LAMIFSLSPWWDLVFRTIALALFGSAVFMLERFFLESERHSATLAMVSRWLGYAVLAGIP 323

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           ++F      A   R+ LA  +L     ++   ++G   A LLIP   L  I         
Sbjct: 324 LAFLTASGAALYVRLFLAVALLAGAPLVVMAALRGVRPAQLLIPGAALFAIAGFFSAFHA 383

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT--GYFSQGIFSDGERQSLAVLGSGD 416
              +          GG+    + +      +           G     +R + A+ G+  
Sbjct: 384 AGWVPGTFAGTVFAGGIFTTALTLFAFAAAYHAQGGRRRADIGTLRSEQRHAFALSGARM 443

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            VWDWDI  D++  +P +  +LGL +G++ G    W  ++H  DR+ +R  L++++    
Sbjct: 444 GVWDWDIAGDKLYVSPSVEAMLGLDAGTLDGNEVAWREHMHPADRETYRNALNAYIERGT 503

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                +FR+R +D  F W+ +    ++       R IG   DI+ QK + E ++ ++  D
Sbjct: 504 VSFTLDFRMRHSDGVFRWVALNASCVAGPENYATRCIGTVRDISAQKHAEERLMHDSVHD 563

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+PNR  F+DR++  +      +  R  +++ID+D++K +ND LG + GD +L+++ 
Sbjct: 564 SLTGLPNRALFMDRMSRAIRRRGLLERPRAALLLIDLDRFKTVNDSLGHSGGDALLIAIA 623

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR+  L+   D +AR+ G+ F ++L +         FA    + +  PI +   E+  T 
Sbjct: 624 RRLESLVTQDDTVARIDGDAFAVLLTTRTEREDALAFAEQASEFLRQPIEVAGHEVYPTC 683

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA 714
           S+G A    +     E+   AE+AMY AK  G   +E F   + S   D + ++ DL  A
Sbjct: 684 SVGVAICEDAHEHPEELFTEAEIAMYRAKRSGKARIELFEPGMRSETDDHLTLETDLRHA 743

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E  E+ L Y PI+ L D  + G EALI+W+HPK G ++   F+ +AEEL +I  I  F 
Sbjct: 744 IERREMELYYQPIMSLTDGGVRGFEALIRWNHPKEGLLAPDNFVPLAEELGVITEIGRFA 803

Query: 775 LERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           L   + ++ +W+        + + +N++S+ LL ++L + ++ ++++       +KL  +
Sbjct: 804 LRAASEELATWQKLFPMERALTVSVNVSSRQLLRHDLIDDVKRVLNRIDIERGTLKLEVT 863

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES+VM NPE +  +L R++ +G  L+LDDFGT  S LSYL   PFDT+K + S + G + 
Sbjct: 864 ESLVMENPEFAASMLTRIKALGAGLSLDDFGTGYSSLSYLQRFPFDTLKVDRSFVAGMSV 923

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            R    I+RS++ +A ++   ++A+    E   ++L  MGCDY Q  +   P+     L 
Sbjct: 924 DRETPLIIRSMVTLAHDLGMEVVAEGTESESQARDLADMGCDYGQGYYFGQPMRAAEALD 983

Query: 952 LLKERF 957
            +   +
Sbjct: 984 FIAHHW 989


>gi|312114494|ref|YP_004012090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219623|gb|ADP70991.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 1096

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/969 (30%), Positives = 513/969 (52%), Gaps = 17/969 (1%)

Query: 7   LRSHFEKAFLILVLF---LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVF 63
           LR        +   +    L   SP+ A+EPI + S+   +D+T +   Y  +G+     
Sbjct: 16  LRGVARMVLCLCAAWTAAALMSSSPASAVEPIVVGSAQEKIDITLLGEFYERRGDKIAAE 75

Query: 64  TAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123
           TAA+ DGI+ R+ VSA +      W VFAL+N +D  + R +    Y +V S  F PDL 
Sbjct: 76  TAANADGIAGRMTVSAKTPGTNPSWIVFALSNPTDKPVMRFLSAQRYDIVNSGVFKPDLD 135

Query: 124 SRRIISVTPSEGFSLDRIPNSDS-DVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYK 182
           + RI +VTPS GF  +R+ + D  D++R++I PG  VTFI+E+++ ++P++YL     + 
Sbjct: 136 APRITNVTPSLGFRPERVEDYDFLDIYRLSIEPGTTVTFIVELASASVPRLYLSSAQNFG 195

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
             +    L  GI++G+  LLA+F T+ + VN  S+      +AW  L Y+ +DFGF  KL
Sbjct: 196 KRLRDVNLLNGILLGITGLLALFFTVIFAVNHKSIFPAAALLAWSALAYLCVDFGFWHKL 255

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
             L S +   +RA +E + ++SL+IFL+ +L+   WH+ +    F  I     L      
Sbjct: 256 FQLSSEDNGTYRAMTEASFAASLVIFLYAFLNLRLWHSWISMAFFGWIVAQLGLIFFGLV 315

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
               T S+AR++L  I +  T  I++  ++G ERA+ L+P W+L  +W     + +T ++
Sbjct: 316 DAQATMSLARLSLIPISVIGTAVIVFLALRGQERALSLLPVWMLFLLWLFAAAVIVTGKM 375

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVW 419
             D+   A+  GLV+ V+LIG TV Q+   +         D  +  L   A+  SG  VW
Sbjct: 376 SGDVAVVAISAGLVVFVMLIGLTVTQYAFQSADPG-ASGEDPGQFKLRVMALEASGASVW 434

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           +WD  R+ +   P++   LG+  G++      WL  +H +DR+  R  L +    + G +
Sbjct: 435 EWDGRRNEINAGPEVENALGVPPGTLRCSQDAWLQNLHASDRERMRLTLWTLRERQGGDI 494

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             EFR++ AD  + W  +R           LR +G+  ++  QK++ E +L NA +D LT
Sbjct: 495 NLEFRMKRADGGYLWYELRAAVTPQRTTRQLRGVGLLRNVNAQKRAQERLLHNAIRDGLT 554

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+ FLDRL   +  +   +NL+PTV  +D+D  K  +     A  D VL++++RR+
Sbjct: 555 GLPNRELFLDRLQFAVARAQQ-ENLKPTVFFVDLDALKNQSRSADFATNDGVLLTISRRL 613

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              +   D LAR+S  +F I++  +     IA  A  +R+S+  P+ +  R++ +T SIG
Sbjct: 614 QRYISQQDTLARVSALQFAILISDDTEPRHIAMLAERVRRSLRTPMKVGGRDLVLTGSIG 673

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
            A +  ++  + ++L+ AE AMY AK  G + +E F+     +      ++ DL  A+E 
Sbjct: 674 IAMYDGTQEHAEDLLREAESAMYRAKRAGPDRIELFKPEMRGATDERAIVQADLKHAIER 733

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            ++ ++Y PI+R+ DE + G+EA + W+HP  G +S  EF   AE   +   +  ++ ER
Sbjct: 734 RQIRILYQPIMRIADERLAGMEAFVVWEHPTLGKLSLPEFEAAAEAAGLSGELWSYVFER 793

Query: 778 IARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
             R    W        PI++ IN++S+ L  ++L + ++ +I +       ++L  +E++
Sbjct: 794 CIRQGARWHRILQRDDPIYLSINMSSQQLFHHDLVQNLRLIIGRETLPKGALRLEIAETL 853

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR- 895
           +  NPE++  +L  L+ + +S+ LD+FG   S LSY   +  D +K + SL+T S + R 
Sbjct: 854 INANPEQAIEILDWLKSLNVSIALDEFGVSFSSLSYWNRLSIDAIKIDRSLVTLSDKDRS 913

Query: 896 -IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +L++++ +A  +   ++A  I  E D+  +  +GCDY Q    A  +    ++ LL 
Sbjct: 914 SAMVLKAVLSIAHELGKDVVAVGIDSEEDLAYVRALGCDYGQGFFYADLMSDKDVVNLL- 972

Query: 955 ERFPLVKNT 963
               + ++T
Sbjct: 973 --NAIARST 979


>gi|254701285|ref|ZP_05163113.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|261751826|ref|ZP_05995535.1| GGDEF domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261741579|gb|EEY29505.1| GGDEF domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 759

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/745 (50%), Positives = 528/745 (70%), Gaps = 3/745 (0%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F  L +FL      + AIEPI IS  D  LDL+    +  N+GE  QV T    DGI RR
Sbjct: 15  FFALFVFLTLSAVHASAIEPIKISKEDTALDLSRAVELLRNKGESVQVSTMPGPDGIVRR 74

Query: 75  IEVS-ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
           IEV    +    GDWA F++AN +D Q++RLIV PH+RLVGS    PDLGS RI S+TPS
Sbjct: 75  IEVQSDQNANASGDWAAFSIANPTDEQIDRLIVAPHFRLVGSGVIWPDLGSPRIASITPS 134

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRG 193
           EGF+LDR P++D+DVFRIT+NPG+V+TF+ E+S+ NLPQ+YLWEP  YKD VNS+TLYRG
Sbjct: 135 EGFALDRQPSADADVFRITLNPGSVITFVAELSSHNLPQLYLWEPEAYKDMVNSYTLYRG 194

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           I++G++ LLA+FLTI ++V  +S+   T A+AW VL YI +DFGF +KL+ +  G   IW
Sbjct: 195 ILLGISGLLALFLTILFVVKGTSLFPATAALAWAVLAYICVDFGFWNKLMQITPGNEQIW 254

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           RA +E+AL++SL+IFLF YL+ NRWH    Y   + I  +  L  ++ + P V + IARI
Sbjct: 255 RAGTEVALAASLVIFLFTYLNLNRWHDHFSYGAVTWILGLLALAGVAVFDPPVASGIARI 314

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +LA  V      I Y  +KGY+RAV+LIPAW+L  IW IG WMA++  LDNDI+Q AL G
Sbjct: 315 SLALTVFSGVAIIGYLAVKGYDRAVMLIPAWLLTLIWLIGAWMAVSGHLDNDIVQSALGG 374

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           GLVLIV+LIGFTV+QH  A G   QG+ SD ERQ+LAV+G+GDIVWDWD+ RDRV TTPD
Sbjct: 375 GLVLIVLLIGFTVMQHAFAGGGLQQGLLSDMERQALAVIGAGDIVWDWDVPRDRVVTTPD 434

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           IA  LG  + S+ GP+RNWLP +H +DRD FR+ LD+ +  RRGR+   FR+RA D  +H
Sbjct: 435 IANYLGNTASSLQGPVRNWLPAMHADDRDRFRSTLDAILENRRGRIGQIFRLRANDGHYH 494

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +R RP+  S+G+++R +G   ++TEQKK+ E +L +A  DNLTG+PNR+ FLDRL++
Sbjct: 495 WYALRARPVIGSDGEVVRCVGTLVNVTEQKKAEERLLHDAVHDNLTGLPNRELFLDRLSS 554

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +++++  + NL PTV VIDID++K++ND LG++ GD +L++++RR+  L+K  D L+RLS
Sbjct: 555 MMNMARGESNLHPTVFVIDIDRFKQVNDSLGMSAGDTILLTISRRLARLMKPQDTLSRLS 614

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++FG++L SE +  +IA FA A+R+++  PI   +REI +TASIG  +WT +  T+ + 
Sbjct: 615 SDQFGLLLASEVDPGRIATFAEALRQAVRSPIAYAKREIVLTASIGLITWTKTATTAEDF 674

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+AELAM+ AK  GG+ +E FR +      D++ ++ DL  A+E  E+ LVY PI++L 
Sbjct: 675 VKDAELAMFQAKRFGGDRIEPFRPAFRAIGSDKLQLESDLRRALERDEISLVYQPIVKLE 734

Query: 732 DEEIVGLEALIQWDHPKWGNISSSE 756
           +  + G EAL++W+HP+ G IS SE
Sbjct: 735 EGTVAGFEALMRWEHPRRGAISPSE 759


>gi|304310557|ref|YP_003810155.1| PAS sensor protein [gamma proteobacterium HdN1]
 gi|301796290|emb|CBL44498.1| PAS sensor protein [gamma proteobacterium HdN1]
          Length = 986

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 176/967 (18%), Positives = 353/967 (36%), Gaps = 42/967 (4%)

Query: 14  AFLILVLFLLWMV-------SPSFAIEPINISSSDRV-LDLTSITRIYVNQGEDFQVFTA 65
           AF  L+ F   +        + + A++   + +     ++L  + R   +  +   V   
Sbjct: 27  AFCALLFFAALIGVLGVPERAMAQALDGHRVDAQQPGGINLGRLVRYLEDSTDRLTVDQV 86

Query: 66  ADIDGISRRI---EVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122
                   R    +V      H   W   ++   +D Q +RL+ V +  L     +    
Sbjct: 87  MAQPPQRWRTFQHDVPNLGYNHSAIWFNVSIDGLNDGQ-DRLLEVGYALLDHVDIWFVSE 145

Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNF 180
           G       T        R       +F +  +    V   M + T         LW    
Sbjct: 146 GQLLQHVRTGDHEPFSSREVAHRHFLFPVPHSESRSVDVWMRVRTEGTVEVPFTLWRTTD 205

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           +        + +G+  GV +++  +    Y+  R    +     A  +L +     GF  
Sbjct: 206 FMQNEQHVLVLKGLYYGVIAVMIFYNCFIYLSVREVAYLYYVLYATSLLLFQVSLDGFAF 265

Query: 241 KL-VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
           +                  I +   + +F   +L       K+  +         IL   
Sbjct: 266 QWFWPEQIAFNEASFNLLIIFVLIFICLFSNSFLQLKDNFPKLSQLMIGTSVGGIILAAS 325

Query: 300 SFYYPMVTASIARITLAS-IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           S       A    +  +  ++ +     ++        A   +  W       + + ++ 
Sbjct: 326 SPLIAYADAIRMTMVFSISVLTFCLGAGVHLLFYKVSMARYYVAGWCFFLAGTVVVALSK 385

Query: 359 TKRLD-----NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
              +      N+ IQ       V+  + +   +           Q    + E        
Sbjct: 386 FGVVPTTFFSNNAIQLGSSLEAVIFSLALADRINIDRHEKLLAKQEAIQNLEMFKSLYEN 445

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           + + ++   +    V+  P +A +LG      +   + +        DRD++R  ++  +
Sbjct: 446 AIEGIFQCTVEGRFVSANPSMAQLLGYLTEEELVRNLPSVEEQTV-LDRDHYREFIEQVL 504

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R   L YE + R  D    W  +  + M ++ G+ L   G   DI+ +KKS E +   
Sbjct: 505 K-RGQVLNYEAKGRRRDGTPFWASLSAKLMRSA-GEPL-IEGFTVDISSRKKSEEQLQYL 561

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR+ F  RL  +L  +   + +   ++ +D+D++K +ND  G   GD++L
Sbjct: 562 AHHDPLTGLVNRREFEVRLQRMLFTAHR-EKVEHALLYMDLDQFKLVNDSCGHVAGDELL 620

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLERE 651
             +T ++ + ++  D LARL G+ FG++L    +       A  ++  +        ++ 
Sbjct: 621 RQITWQLQQQMRSGDTLARLGGDEFGVLLERC-DRQNAFKVASKLKSVVQDFRFVWDDKF 679

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMI 707
             +  SIG  S  S   + +++L  A+ A Y AK  G N +  ++            +  
Sbjct: 680 FVLGVSIGLVSINSGSRSVADLLSLADSACYAAKDGGRNRIHEYQPGDKNLLLAQSEMQW 739

Query: 708 KEDLCLAVENSELYLVYHPII----RLMDEEIV--GLEALIQWDHPKWGNISSSEFMLIA 761
              +  A++ +   L    I+      M  E +    E LI+      G +    F+  A
Sbjct: 740 VGRINEALDQNLFVLYQQAIVPVVGDPMTGEEIWGHCEVLIRMRDAGGGILPPGAFLPAA 799

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   ++ AI+ ++++ +   + S  +      ++  +N++   L   E    +    S  
Sbjct: 800 ERYNLMPAIDRWVIKTLFSFLASHPELTTPNHLY-AVNLSGASLGGEEFENYVLEQFSLW 858

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I    +E++ + N   +   + +L+ IG S +LDDFG+  S   YL  +P D +
Sbjct: 859 NIPPQLICFEITETMAVTNLAVTSQFMTKLKAIGCSFSLDDFGSGFSSYGYLKSLPVDYL 918

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G  +    +     A++ SI  +A+ +    IA+ +      K L R+G DY Q   
Sbjct: 919 KIDGLFVVDIVDDKIDFAMVESINRIAQVMGKKTIAEFVENNEIRKRLKRLGVDYAQGYG 978

Query: 940 VASPLGF 946
           +A P   
Sbjct: 979 IAKPQPL 985


>gi|220910322|ref|YP_002485633.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219866933|gb|ACL47272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Cyanothece sp. PCC 7425]
          Length = 877

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 169/576 (29%), Positives = 302/576 (52%), Gaps = 5/576 (0%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +         +    ER +LA+ G+ D +WDW++V + +  +    TILG +   + 
Sbjct: 293 LADISERKRTEAALMETKERYALAIQGANDGIWDWNLVNNEIYFSSRWKTILGYSESEVD 352

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +  W   IH  D +  +  L+     +    + E+R+R  + ++ W++ R   + NS 
Sbjct: 353 NCLEEWFSRIHPQDLERVKLKLNLHQQGQSSHFEEEYRLRHKNGKYRWVLSRGIAVRNSE 412

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G   R  G  +DI+EQ+ + E ++ +A  D LTG+PNR  F+DRL  ++  +    N   
Sbjct: 413 GKAYRMAGSLSDISEQRLAQEQLMHDALHDPLTGLPNRTLFMDRLRQVIHHARRHRNYNF 472

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K IND LG   GD +L+ L  R    L+  D +ARL G+ F I+L     
Sbjct: 473 AVLFVDLDRFKVINDSLGHLAGDTLLIELAHRFQIGLRPDDTVARLGGDEFVILLDDLLE 532

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +    A  ++  +  P  +  + +  +ASIG A   +        L+NA++AMY AK 
Sbjct: 533 VEESIRIAHRIQTLVQQPFIINGQTVFTSASIGIAPKDTHHHKPEHYLRNADIAMYRAKA 592

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GG+    F   + +    R+ ++ DL  A+E  EL L Y PI+ L  ++IVG EAL++W
Sbjct: 593 AGGSRHVLFTSVMHTSALVRLQLETDLRQALERQELRLQYQPILCLNTDQIVGFEALVRW 652

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASK 803
            HP+ G I+   F+ +AEE  +I  I  ++L+   R +  W  Q     P+ + +N++SK
Sbjct: 653 QHPRDGLIAPGHFITVAEETGLIVPIGEWVLQEACRQMQCWHTQFGQVLPLMVSVNLSSK 712

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   +L + +  ++++T   P ++KL  +ES+++ N E +R  L +L++  I L++DDF
Sbjct: 713 QLSQPDLLQQVDRMLAETGLRPQQLKLEITESMILDNTEVARQTLLKLKERQIQLSMDDF 772

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL  +P D +K + S +      E+   ++R+II +A +++  +IA+ I   
Sbjct: 773 GTGYSSLNYLHRLPIDLLKIDRSFIHEMDSGEESRELVRAIISIAHSLKMQVIAEGIETR 832

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             +++L  +GC++ Q    ++PL        L++ F
Sbjct: 833 SQLEQLHELGCEFGQGYLFSTPLDPEPAADFLQQAF 868



 Score = 42.6 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 39/146 (26%), Gaps = 16/146 (10%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +             +    ++    +       +  +   +     P    +L  +  
Sbjct: 173 VALALEARDRQQAEAELQKTNQQLRNILESLTSGFFSLNETAEFTYINPQAEPLLQHSRA 232

Query: 444 SMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQFHWMIIRIRP 501
            + G     + P +   D   F    ++       + +  + R+        W+ I I P
Sbjct: 233 ELLGHNLWQFFPALR--DSSFFPYYQEAITDQVTVKFEDYYPRLN------RWLEIHICP 284

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
                           DI+E+K++  
Sbjct: 285 FQ------TGVAVYLADISERKRTEA 304


>gi|22298169|ref|NP_681416.1| hypothetical protein tll0627 [Thermosynechococcus elongatus BP-1]
 gi|22294348|dbj|BAC08178.1| tll0627 [Thermosynechococcus elongatus BP-1]
          Length = 845

 Score =  635 bits (1639), Expect = e-179,   Method: Composition-based stats.
 Identities = 185/710 (26%), Positives = 316/710 (44%), Gaps = 21/710 (2%)

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
            +R+   +   +    A  +     S         I  + L+S      Y II     G 
Sbjct: 123 LDRYTRALERCSLPDQAVASWGTAFSSSEMSEATEIQLLRLSSFPELSPYPIIELAANGQ 182

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
              +          +  +     +  RL +  +Q        + V    + V  H+L   
Sbjct: 183 LTYLNPAAIQEFPDLGELDGQHPLLSRLKSWFLQEKRFAVEEINVGDRTYEVTIHLLQES 242

Query: 395 YFSQ--------------GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
              +               +    ER +LA   + D +WDW I    V  +P    ++G 
Sbjct: 243 QLIRCYLTDITERKRSELALRISEERYALAAEAANDGLWDWHIGNRSVYYSPRWELLIGE 302

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             GS+   I  W   +H +D +  R  +   +   R     EFR+R  D  + WM  R +
Sbjct: 303 PPGSLQPTIEEWWRRVHPDDLEQLRQNIKEHLFGSRPCFDCEFRIRHRDGSYRWMRSRGK 362

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + N  G   R  G   D+TE     E IL +A  D +TG+ NR   +DRLT  +     
Sbjct: 363 ALRNQKGQPYRMGGSMTDVTEYHLIQEKILHDALHDAMTGLANRVLLIDRLTQAIARRQR 422

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             N    V+ +D+D++K IND LG   GD +L+ + +R+    +  D +ARL G+ F I+
Sbjct: 423 RPNSLFAVLFLDVDRFKVINDSLGHLAGDQLLIGIGQRLRACTRPEDTIARLGGDEFAIL 482

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   ++  +    A  +   +  P  L   EI  TASIG A       T+ ++L++A+ A
Sbjct: 483 LEDLSDPAQAMKVAERILMVLGRPFLLEGHEIFTTASIGIAFPWEDSQTAEDLLRDADTA 542

Query: 681 MYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G    E F ++        + ++ +L  A E  E  + Y PI+ L   ++VG 
Sbjct: 543 MYRAKSLGKARYEVFSMTMRAQTIALMQMETELRRAAEREEFLVYYQPIVDLATLKMVGF 602

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFIL 797
           E L++W HP+ G IS  EFM +AEE  +I  I+ +++    R +  W         + I 
Sbjct: 603 ETLLRWQHPERGIISPGEFMAVAEETGLILPISWWVMAEACRQMQRWAVIFPRSRKLRIG 662

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ +     +L   +++++++T +   R+ L  +E +++ N E +   L  +R +GI 
Sbjct: 663 VNLSGRHFQQADLLPNLRSILAETGFPAQRLCLEVTEGILIDNKEVAIATLEEIRAMGIG 722

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIA 915
           +++DDFGT  S LSYL   P DT+K + + ++   S E    I+ +I+ +A ++   ++A
Sbjct: 723 VSMDDFGTGYSSLSYLHRFPIDTLKIDRTFISALNSEESSATIVHAILMLAHSLRLQVVA 782

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF--PLVKNT 963
           + I      + L  +GC+Y Q    A PL    + KLL  +   PLV+ +
Sbjct: 783 EGIETREQYRALQALGCNYGQGYFFARPLSARQVEKLLARQSLPPLVRPS 832


>gi|20807551|ref|NP_622722.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516086|gb|AAM24326.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 793

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 150/581 (25%), Positives = 280/581 (48%), Gaps = 5/581 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++     + Q+++        +    ER  L V G+ D +WDWD++ D    +     I+
Sbjct: 179 LMAREEELRQNLIEIKRQQDELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDII 238

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL    ++     W+ +IH  D       L + +  +      E+R++  D ++ W++ R
Sbjct: 239 GLDKEVVNNYYETWIKFIHPRDIKIVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSR 298

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + + +  G  +R  G   DITE+K+    +   AF D LTG+P R+ F+DRL   +  +
Sbjct: 299 GKALWDEEGRAIRIAGSHTDITERKQMESKLKYMAFYDPLTGLPRREVFMDRLKIAMADA 358

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +   +  V  +D+D +K IND LG  +GD +L  + R++   L+  D ++R+ G+ F 
Sbjct: 359 KRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKVARKLKACLRESDTVSRVGGDEFV 417

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L    N       A  + +    PI     E+ VT SIG A +         ++KNA+
Sbjct: 418 ILLPDIINIDDTNKVANRILELFNQPIKFNNYELYVTISIGIAIYPDHGKNERAIVKNAD 477

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N  + F             I+ DL  A+E  + +L Y PI+     ++V
Sbjct: 478 IAMYKAKRDGKNSFQYFDSITKKEVEIASTIRRDLRFALEKGQFFLHYQPIVDARTGKVV 537

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W HPK G IS   F+ IAEE   I +I  ++L    + +  WR+        +
Sbjct: 538 SMEALLRWQHPKKGLISPIHFIPIAEETRQIISIGEWVLRTACKQMKEWRNMGYY-GFSV 596

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L   +  + +  ++++    P  ++L  +E+V++   +     L RL+++G+
Sbjct: 597 SVNVSVHQLQQPDFAKVVFDILNEIELEPRFLELEITETVLIEAMDTVVRNLYRLKEMGV 656

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIA 915
            + +DDFGT+ S   YL     D +K + S ++    E   AI+ +I  +   ++  + A
Sbjct: 657 KIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAITFLGHRMKLGVTA 716

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +  +  +  L   GCD +Q  + + PL  +  ++++++ 
Sbjct: 717 EGVETKEQLDCLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 757


>gi|158337195|ref|YP_001518370.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158307436|gb|ABW29053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF domains
           [Acaryochloris marina MBIC11017]
          Length = 862

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 163/561 (29%), Positives = 279/561 (49%), Gaps = 4/561 (0%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +       Q +    ER + A  G+ D +WDW +  +RV  +P    ++G     + 
Sbjct: 287 LVDITQRKRAEQILRESEERYAAAARGANDGLWDWHLRSNRVYFSPRWKAMIGYEEDEIS 346

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                WL  +H +DRD  +  L   +       Q EFR+R  + ++ W   R   + +++
Sbjct: 347 DRCEEWLDRLHPSDRDRLKQELSMHLKGETNHFQSEFRLRHKNGEYRWFRSRGMALRDTD 406

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               R  G   DITE   + E ++ +A  D LT +PNR  F+DRLT  +         + 
Sbjct: 407 QQPYRIAGSQTDITEYHLAREQLVHDALHDALTCLPNRVLFMDRLTQAIKQYQRHPEDQF 466

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             + +D+D++K IND LG  +GD +L+ +  R+   L+  D +AR+ G+ F I+L +  N
Sbjct: 467 ATLFLDLDRFKIINDSLGHMIGDRLLIEVGNRLQFCLRDQDTVARIGGDEFVILLNTIQN 526

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +   A  +++ +    ++   EI    SIG A  +     + E+L++A+ AMY AK+
Sbjct: 527 MEHVLQTAERIQQQLKQAFSIEGHEIFTGTSIGIALSSPEYQHAEELLRDADTAMYRAKN 586

Query: 687 RGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  E F  S          ++ DL  A++  E  L Y PI+ L  + +VGLEAL++W
Sbjct: 587 LGKNRYEIFSSSMRSQVLALSQLENDLRRAIDRQEFQLFYQPIVSLDTQNLVGLEALVRW 646

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASK 803
            HP+ G I  SEF+ +AEE  +I  +  ++L +  R +  W+        + + +NI+S+
Sbjct: 647 HHPERGLILPSEFVPMAEEAGLIIPLGGWVLAQACRQMQLWQQHYSLATDLQLNVNISSR 706

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                     + A++  T     R+KL  +E V+M +       L  ++ +GI L +DDF
Sbjct: 707 QFSQPNFVNDIHAVLEDTNLPCHRLKLEITEGVLMDHASDVADKLDAIKTLGIKLGIDDF 766

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           GT  S L+YL   P DT+K + S +   S+E+   I+R+I+ +A N+   ++A+ +  E 
Sbjct: 767 GTGYSSLNYLNAFPVDTLKIDRSFVGRMSSEEGFEIVRTIVNLAHNLHMDVVAEGVELEE 826

Query: 923 DIKELTRMGCDYIQDSHVASP 943
             +ELT+M C+Y Q    + P
Sbjct: 827 QAEELTQMNCEYAQGYLFSEP 847


>gi|108803341|ref|YP_643278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
 gi|108764584|gb|ABG03466.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
          Length = 754

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 187/706 (26%), Positives = 319/706 (45%), Gaps = 12/706 (1%)

Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316
             +A    L+ +  + L   R       +      C+ +L        +    +A + + 
Sbjct: 52  GLLAAGVILLTYGGLLLFARRRVGAGERVEAVWTICVGLLLAALLMSAVQPGWLAVLAVT 111

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL-WMAITKRLDNDIIQPALVGGL 375
            ++           ++G +   L+  AW+ + +  I    +    R     +     G L
Sbjct: 112 PLISVAVALP---YVRGGDLLRLIFLAWLTVVVMAILSRALPPLSRPPAWFVDAFTAGAL 168

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                ++   + Q             +  ER +LA  G  D +WDWD+ RDRV  +    
Sbjct: 169 AAATAVVLLLLWQFSTRLNETLARTRAAEERYALAERGVNDGLWDWDLRRDRVYYSSRWK 228

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +LG     +      W   +H  DR      +   +  RR  L  E+R+R  D  + WM
Sbjct: 229 EMLGWREDEVGEEPDEWFRRVHPQDRKRLLEEVREHLRGRREHLNVEYRIRHRDGSYRWM 288

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           + R   + +  G+ +R  G   DIT +K++ E +L  A  D LTG+PNR  F++RL   L
Sbjct: 289 LTRGLAVRDGEGNPVRMAGSQTDITRRKQAEEKLLHEASHDALTGLPNRAFFMERLGEAL 348

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                 D  R  V+ ID+D++K IND LG A+GD +LV+   R+   L+  D LARL G+
Sbjct: 349 RRPG--DGDRVAVLFIDLDRFKMINDSLGHAMGDRLLVAAAERLKGCLRPQDTLARLGGD 406

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L   ++    A  A  + + +  P  L   E+   AS+G       +    E+L+
Sbjct: 407 EFTVLLEGVSSEE-AASVADRLLERLREPFRLDGYELFTAASVGVVLGGRERAGPEELLR 465

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A++AMY AK  GG     F   + +   +   ++ +L  A+E  E    Y PI+ L   
Sbjct: 466 DADIAMYRAKALGGGRKGIFEAGMHTRAMELFRLENELRRAIEREEFTAHYQPIVSLKTG 525

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP- 792
            I G EAL++W HP+ G I   EF+ +AEE  +I  + L ++      ++SW+ +     
Sbjct: 526 LISGFEALVRWRHPERGLIRPDEFVPVAEETGLIVPLELSVVREACASLVSWQREFPQHR 585

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P+ + +N++   L   EL E ++ ++ +T      ++L  +ES +M N   +   L RLR
Sbjct: 586 PLTMSVNLSRNQLARPELPEQVERILLETGLDARSLRLEVTESAIMENVGSAAATLSRLR 645

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIE 910
            + I + +DDFG   S LS L  +P D +K + S +         + I+++II +A N+ 
Sbjct: 646 DMNIRVHIDDFGMGYSSLSVLHQLPIDALKVDRSFVGRMDGANDDVEIVQTIITLAHNLG 705

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++A+ +  E  +  L R+GCDY Q    + PL      +LL   
Sbjct: 706 LDVVAEGVEREEHLDRLRRLGCDYAQGFLFSEPLDAAGARRLLSAY 751


>gi|220909032|ref|YP_002484343.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865643|gb|ACL45982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 842

 Score =  620 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 154/574 (26%), Positives = 282/574 (49%), Gaps = 5/574 (0%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +       Q +    ER + A  G+ D +WDWD+  +++  +P    ILG     + 
Sbjct: 252 MVDITQRKLTEQALRESEERYAAAARGANDGLWDWDLRTNQIYFSPRWKLILGWHEDEIG 311

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W   IH  DR+  +  L   +   +   + E R+   D  + W+  R   + + +
Sbjct: 312 KNPEEWFDRIHHEDRERVKAELHYHLNGSKAHFESEHRLLHRDGSYRWVRSRGLALCDED 371

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               R  G   DIT  + + E IL +A  D LTG+PNR   LDRL   +       + + 
Sbjct: 372 AIPYRIAGSLTDITAYRLAQEQILHDALHDALTGLPNRVLLLDRLAQAIHRGRRRSDYQF 431

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K IND LG   GD +LV + +R+   L+  D +ARL G+ F I++    +
Sbjct: 432 AVLFLDLDRFKVINDSLGHMAGDRLLVEIAQRLQLCLRSEDTIARLGGDEFAILVEDIQS 491

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +      +   +  P++L  ++I  TASIG A  +       E+L++A++AMY AK 
Sbjct: 492 VEAVLQLVEQLHAELNRPLSLDNQDIFTTASIGIAFNSPQTEQPEELLRDADVAMYRAKS 551

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  E F   +      ++ ++ +L  A+E  EL + Y PII+L +  + G E L++W
Sbjct: 552 LGKNRHEIFSAGMRLEAIAQLQVETELRHALERQELRVFYQPIIQLNEGTLYGFETLVRW 611

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASK 803
           +HP+ G +   EF+ IAEE  +I  I+ ++L++    + +W+ Q      + I +N   +
Sbjct: 612 EHPQRGLVLPLEFLPIAEETGLIVPISWWVLQQACEQMQAWQQQFPCSQFLNISVNFTPQ 671

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                   + +  ++++T + P R++L  +E++ M + E +  +L  L+  GI + LDDF
Sbjct: 672 HFAQPSFLQKLNRILAETGFPPHRLRLEVTENLFMKSTETTIDILQELQDWGIQIYLDDF 731

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P +T+K +   +          +I+++I+ +A  +   +IA+ +   
Sbjct: 732 GTGYSSLNYLHRFPINTLKIDRCFIGHLNSNGSHASIVQAIMTLAHVLGLAVIAEGVETV 791

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + +L ++ C++ Q    + PL    I + L +
Sbjct: 792 EQLNQLCQLQCEFGQGYLFSLPLSQTQIAEYLAK 825


>gi|158338665|ref|YP_001519842.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158308906|gb|ABW30523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [Acaryochloris marina MBIC11017]
          Length = 880

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 160/575 (27%), Positives = 296/575 (51%), Gaps = 4/575 (0%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +       Q +     R + A  G+ D +WDWD+  + +  +     +LG +   + 
Sbjct: 294 LIEITQHRRTEQQLRLSEARYAAAAKGANDGLWDWDLHGNTIYFSDRWKAMLGFSEEEIG 353

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W   IH  D+D     L + +     + + E+R+  ++ ++ W   R   + N  
Sbjct: 354 ASPDEWFNRIHPQDQDRVTEDLSAHLRGDTPQFECEYRILHSNGEYLWFKGRGLALRNDQ 413

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               R  G   D+T    +   +   A  D +T +PNR  F++RLT    ++    +   
Sbjct: 414 NQAFRIAGSQTDVTAYYSTRAQLEFKAQHDEMTQLPNRVLFMERLTHAFRMAKHQQSRLF 473

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K IND LG  VGD +L+ +++R+ + L+  D +AR  G+ F I+L +  +
Sbjct: 474 AVLFLDLDRFKIINDSLGHRVGDQLLIEVSKRLQQCLRKQDTIARFGGDEFAILLDTVED 533

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           + +    A  + +++   I+L E E+  +ASIG    +       E+L++++ AMY AK 
Sbjct: 534 ADEAIHVAQRILQALKAKISLEEHEVYTSASIGITVSSPDYQAPEELLQDSDTAMYRAKK 593

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           +G N  E F   + +  + ++ ++ DL  A+ N+EL+LVY PI+ L  E IVG EAL++W
Sbjct: 594 QGKNCFEVFSSGMRAQVNSQLQLETDLQRAISNNELHLVYQPIVDLNTENIVGFEALLRW 653

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASK 803
           +HP+ G +  SEF+ +AE+  ++ +I+ ++L    + +  W +       + I +NI++ 
Sbjct: 654 NHPERGLVPPSEFIPVAEDAGLMVSIDWWVLTEACQQMAHWLNIYPGSTELTINVNISAH 713

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L +  CE + A+I +T   P  +KL  +E V++ N       L  L+K+GI L +DDF
Sbjct: 714 QFLQSTFCEKVNAIIQETGMKPHHLKLEITEGVILSNAPNISEQLNNLKKLGIHLAIDDF 773

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEI 922
           GT  S LSYL   P D +K + S ++   +   +AI+R+I+ + +N+   ++A+ +  +I
Sbjct: 774 GTGYSSLSYLYAFPLDVLKVDYSFVSRMDQDNGLAIVRTIVNLGQNLNMKVVAEGVETKI 833

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             + L  MGC++ Q    + PL   S+  +L  + 
Sbjct: 834 QQEYLQEMGCEFAQGYLFSRPLKKESVESILTNKN 868


>gi|163795826|ref|ZP_02189790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [alpha
           proteobacterium BAL199]
 gi|159178859|gb|EDP63395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [alpha
           proteobacterium BAL199]
          Length = 829

 Score =  616 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 168/577 (29%), Positives = 295/577 (51%), Gaps = 5/577 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 V   G   + +    ER +LA  G+ D +WDW++  +R+  +     +LG A+ 
Sbjct: 249 VATYSDVTERGKAERALRESEERYALAAAGANDGLWDWNLGSNRIFFSDRWKQMLGYATD 308

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      W   IH  D       +D+ +       + E RVR  D+ + WM++R   + 
Sbjct: 309 EIEDGAEEWFSRIHPEDVQRVTAQIDAHLNGTATNFESEHRVRHFDDTYRWMLVRGLAVR 368

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +   +  R  G   D+TE+K++ E  + +A  D+LTG+ NR  FL+R+   L       +
Sbjct: 369 DGENNAYRIAGSMTDVTERKRAEEQAIHDALHDSLTGLANRTLFLERVRQALARQRRSLS 428

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V+ +D+D++K +N+ LG   GDD++++  RR+ + LKF D +ARL G+ F I+L  
Sbjct: 429 AQFAVIYLDLDRFKVVNESLGHVHGDDLIIAAARRLEQNLKFGDTVARLGGDEFAIMLED 488

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++  +    +  ++K+++ P  L  +E+  TAS+G A  T + +   ++L+++ELAMY 
Sbjct: 489 VHDKEEGTALSEMLQKALSTPFVLGGKEVFTTASMGIAHSTDNYVRPEDILRDSELAMYR 548

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G     +F  +        + ++ DL  A++ +E+ L + PI+ L D  I G EAL
Sbjct: 549 AKELGKARSVAFDPAMRGTTVTPLDVETDLRRALDRNEMILNFQPIVSLADGRIRGFEAL 608

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINI 800
            +W H + G+I  SEF+ IAEE  MI  +  ++L      ++ W  +     P  I +N+
Sbjct: 609 SRWRHKERGDIPPSEFIPIAEETGMIVELGQWVLRNACAQMVEWNKEFPDQGPFEISVNL 668

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +     +L + +   +  T    S +KL  +ES +M N +RS  +L  L+ + I + +
Sbjct: 669 SGRQFTQLDLVKMVTNSLDGTGLDASFLKLEITESALMENAQRSAQMLRHLKDLHIKVCV 728

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P DT+K + S +      R    I+R+I  +A+N+   +IA+ +
Sbjct: 729 DDFGTGYSSLSYLHKFPIDTLKIDKSFVQDMGRNRHNLEIVRTIAVLAQNLRLDVIAEGV 788

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                + +L  +GC Y Q    + PL  +++  LL E
Sbjct: 789 ETPEQLAQLRAIGCGYAQGFLFSRPLTADNVRHLLAE 825


>gi|148656467|ref|YP_001276672.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148568577|gb|ABQ90722.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus sp. RS-1]
          Length = 921

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 157/586 (26%), Positives = 286/586 (48%), Gaps = 6/586 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +     +++ V       + + +  ER +LA  G+ D +WDWD+V  ++   P    +L
Sbjct: 337 GLSGSVAIVRDVTEAKRAEEALRASEERYALAAQGANDGLWDWDLVSGKIYFAPRWKAML 396

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     +      W   +H +DR+     L +         + E+R+   D  + WM+ R
Sbjct: 397 GYDDTDIGTSPDEWFRRLHPDDRERVEWRLLAHTRRLITSFELEYRILHRDGNYRWMLCR 456

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              + + +G   R +G   DIT +K++ E +   A  D LTG+PNR  F+DRL+  L  +
Sbjct: 457 GMAVWDEHGRATRMVGSQTDITGRKQAEEQLAYGALHDALTGLPNRTLFMDRLSLALKRA 516

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             + +L   V+ +D+D++K IND LG A GD++L+++ RR+  +L+  D +ARL G+ F 
Sbjct: 517 QREKHL-FAVLFLDLDRFKTINDSLGHAAGDELLIAVARRLESVLRPGDTVARLGGDEFA 575

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L   N   +       + +++  P+++    +  TASIG A          E+ ++A+
Sbjct: 576 VMLDRLNAPEEAEWIVERIHQALQAPLSVRGHTVYTTASIGLALGNEGYERPEELARDAD 635

Query: 679 LAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK +       F     R       ++ DL  A+E +EL + Y PI+ L    +V
Sbjct: 636 TAMYQAKMQRRARHVVFDPDMRRKAVSHFQLENDLRSAIERNELRVHYQPIVALNGRRVV 695

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIF 795
             EAL +W HP+ G IS  +F+ ++EE+ +I  I  ++L  +   +  WR +      ++
Sbjct: 696 AFEALARWQHPQHGLISPDQFIPLSEEIGLINTIGHWVLRDVCHQVREWRRRRPRHFDMW 755

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++  L   +L   +   I+     P+ IK+  +E+  + + E +   L  LR +G
Sbjct: 756 VNVNLSAHQLAQPDLVAQIAHAIADAGIPPNAIKIELTENTFVTHREIAIAQLNELRSLG 815

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           + + +DDFG   S L YL   P DT+K +   +   G   +   I+++II +A ++  T+
Sbjct: 816 VGVCIDDFGAGYSSLGYLSQFPVDTLKIDRVFIARLGMMREHYEIVKAIITLAHSLGMTV 875

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  E     L+ + C+Y Q       L  + +   L  R  L
Sbjct: 876 VAEGVETEEQATMLSALRCEYAQGWLFGRALPADQVEAFLDSRSSL 921



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 16/149 (10%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH- 446
           Q   A     + +          +   GD V   D     +   P    ILG    S+  
Sbjct: 215 QRAEALKRSEEALRQQTNLLRAILDSMGDAVVVTDTDGHLIHHNPAAVQILGDRLASLLP 274

Query: 447 -------GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIR 498
                      +   ++  +D    R +      +       E R+ A D     W+ I 
Sbjct: 275 GSSSAPVAQSPDGRSWLTPHDLPFARAL------HGESVDAAEVRLPATDCHPEQWLSIT 328

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527
            RP+ +++G +   + I  D+TE K++ E
Sbjct: 329 ARPLRDTDG-LSGSVAIVRDVTEAKRAEE 356


>gi|156743079|ref|YP_001433208.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234407|gb|ABU59190.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 919

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 158/585 (27%), Positives = 285/585 (48%), Gaps = 6/585 (1%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             +     +++ V         + +  ER +LA  G+ D +WDWD+V DR+        +
Sbjct: 336 EGLSGSVAIVRDVTEAKRAEAALRASEERYALAAQGANDGLWDWDLVNDRIYFASRWKAM 395

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG     +      W   +H +DR+     L +         + E+R+   D  + WM+ 
Sbjct: 396 LGYGDDEIGTSPDEWFSRVHPDDRERVELRLLAHTRRLIASFELEYRILHRDGAYRWMLC 455

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R   + +++G   R +G   DIT++K++ E +      D LTG+PNR  F+DRL+  L  
Sbjct: 456 RGIAVWDASGRATRMVGSQTDITDRKRAEERLEYGILHDTLTGLPNRTLFMDRLSLALRR 515

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S   +     V+ +D+D++K IND LG A GD++LV + RR+  +L+  D +ARL G+ F
Sbjct: 516 SQR-ERSLFAVLFLDLDRFKTINDSLGHAAGDELLVVVARRLEGVLRPGDTVARLGGDEF 574

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L   +        A  +++++  P+ +  R +  TASIG          + E+ ++A
Sbjct: 575 AVMLDRLDAPEDAEWIAERIQQALRAPLTIGGRTVYTTASIGLVLSNQGYERAEEIARDA 634

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK         F     R       ++ DL  A+E+ EL + Y PI+ L    I
Sbjct: 635 DTAMYQAKMGQRARYVVFDPDMRRKALSHFQLENDLRSAIEHGELCVYYQPIVALTSGRI 694

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPI 794
           V +EAL +W HP++G I+  +F+ +AEE+ +I AI  ++L+   R +  WR        +
Sbjct: 695 VAVEALARWQHPQYGLIAPDQFIALAEEVGLINAIGQWVLQEACRQLRVWRTYYPHYADM 754

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           ++ +N+++  L   +L   +   I++       +KL  +E+  + + + +   L  LR +
Sbjct: 755 WVNVNLSAHQLAQPDLVAQVADTIARNDVPARALKLEITENTFITHRDVAAAQLNDLRSL 814

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912
           G+ + +DDFGT  S LSYL   P DT+K +   +   G+  +   I+++II +A ++  T
Sbjct: 815 GVGVCIDDFGTGYSSLSYLSQFPVDTLKIDRVFINRLGAAREHREIVKAIITLAHSLGMT 874

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++A+ +       EL  + C+Y Q            + ++L    
Sbjct: 875 VVAEGVETLDQANELRALRCEYAQGWLFGCTAPPEQMEQMLAAHQ 919



 Score = 58.0 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 102/364 (28%), Gaps = 49/364 (13%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           AL   L   V        Q   A       +          +   GD V   D     + 
Sbjct: 197 ALNLMLEQRVAERTMLAEQRAEALKRSEASLRQQTNLLLAVLDSMGDAVVVTDAAGRLIL 256

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQ-YEFRVRA 487
                  +LG    S+     +       + R +     L      R   +   E  + A
Sbjct: 257 YNSAAVHMLGDRLMSLLPSAPDTQVAQSPDGRSSLTPRDLPFARALRGESVNAAEVHLPA 316

Query: 488 AD-NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            D     W+ I  RP+ ++ G +   + I  D+TE K++   +               ++
Sbjct: 317 GDAGAEQWLSITARPLRDTEG-LSGSVAIVRDVTEAKRAEAAL---------------RA 360

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             +R    L     +D L           +  +ND           +    R   +L + 
Sbjct: 361 SEER--YALAAQGANDGLW---------DWDLVNDR----------IYFASRWKAMLGYG 399

Query: 607 DILARLSGNR-FGIILISENNSLKIADFAI--AMRKSIAMPINLLEREITVTASI--GFA 661
           D     S +  F  +   +   +++   A    +  S  +   +L R+      +  G A
Sbjct: 400 DDEIGTSPDEWFSRVHPDDRERVELRLLAHTRRLIASFELEYRILHRDGAYRWMLCRGIA 459

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
            W +S   +  +    ++            G  H     + +       +   L  +   
Sbjct: 460 VWDASGRATRMVGSQTDITDRKRAEERLEYGILHDTLTGLPNRTLFMDRLSLALRRSQRE 519

Query: 718 SELY 721
             L+
Sbjct: 520 RSLF 523


>gi|78044640|ref|YP_360725.1| sensory box protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996755|gb|ABB15654.1| sensory box/GGDEF domain/EAL domain protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 769

 Score =  613 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 152/581 (26%), Positives = 276/581 (47%), Gaps = 5/581 (0%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++     V Q+++        +    ER  L V G+ D +WDWD+  D    +     +
Sbjct: 178 ELMAREEEVRQNLIEIQRQQDELKKSEERYRLVVEGASDGLWDWDLETDTAYISERWRDL 237

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G     ++     W+ +IH  D       L + +  +      E+R++  D ++ W++ 
Sbjct: 238 IGFDKEVINNYCETWIKFIHPRDVKAVINNLRNHLEKKTPFYLCEYRIKTKDGKYIWILS 297

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R + + N  G  +R  G   DIT++K+    +   AF D LT +P R  FL+RL   +  
Sbjct: 298 RGKALWNKEGKAIRMAGSHTDITQRKQMESKLEYMAFHDPLTNLPRRDVFLERLKVAMAD 357

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  +   +  V  +D+D +K IND LG   GD +L  + + + + ++  D ++R+ G+ F
Sbjct: 358 ARRNGK-KLAVFFVDLDNFKIINDSLGHHTGDRLLKKIAKELTKCVRETDTISRVGGDEF 416

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L   N+       A  + +    PI L   E+ VT SIG A +     +   +LKNA
Sbjct: 417 IILLPDVNSIEDTDKVAKRILELFDQPIKLNNYELPVTISIGIAIYPDHGKSERAILKNA 476

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK +G N  + F ++          +K DL LA+E ++  L Y P+I L   +I
Sbjct: 477 DIAMYTAKRKGKNGFQYFDIAMKSEVEFANTVKRDLRLALEKNQFILYYQPLIDLKTGKI 536

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             +EAL++W HPK G IS   F+ IAEE   I +I  ++L    R +  W          
Sbjct: 537 ASMEALLRWQHPKKGMISPFHFIPIAEETRQIISIGEWVLRTACRQMKEWLGM-GYSGFS 595

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++   L      + +  ++ +    P  ++L  +E+V++   E     L  L+K G
Sbjct: 596 VSVNVSVHQLEQPNFAKVVCDILKEIELEPRYLELEITETVLIEAVETVVENLYHLKKAG 655

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTII 914
           + + +DDFGT+ S   Y+     D +K + S + G       AI+ +II +   ++  + 
Sbjct: 656 VKIIIDDFGTENSSFRYMQKFTVDGLKIDRSFVNGIKIDVNKAIIDAIILLGHRLKLPVT 715

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +     ++ L   GCD +Q  + + PL  + ++ L+++
Sbjct: 716 AEGVETREQLECLIESGCDKVQGFYFSKPLPPDEVIHLVQK 756



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 3/131 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E  S  +     ++  W +    V        +  +A       I   +  I   
Sbjct: 25  LKQKEEFLSKILENEQLLIVVWTLESGVVWFNRYTQNLFDIAIEEQLEKID--VSLIIPE 82

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +  ++        G R  R   E  +   + +  +++      S+  G     +    D+
Sbjct: 83  NLISYLKEQLDDTGERSFRYIDEKPMVLKNGREIYIMWHNSIFSDEEGH-KYIVSTGIDV 141

Query: 520 TEQKKSLEGIL 530
           TE KK+ +   
Sbjct: 142 TELKKTEKRFE 152


>gi|296132516|ref|YP_003639763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermincola sp. JR]
 gi|296031094|gb|ADG81862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermincola potens JR]
          Length = 1349

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 149/591 (25%), Positives = 274/591 (46%), Gaps = 8/591 (1%)

Query: 373  GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
              L LI       V++ +       Q I+ + ER  + +   GD V   D         P
Sbjct: 759  VSLTLIEGGGTVCVVRDITERKQAEQAIWEEKERAQVTLHSIGDAVITTDGQGIITYLNP 818

Query: 433  DIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADN 490
                + G  +    G         I+          +   +       L     +     
Sbjct: 819  VAEVLTGWTNDEACGRPLLEVFNIINETTGQVVENPVTKCLREGNIVGLANHTVLIHRSG 878

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            + + +     P+ N  G+I+  + + +D++E++  +E +   A+ D LT IPNR  F DR
Sbjct: 879  RRYAIEDSAAPIKNREGEIIGVVLVFHDVSEKRNMIEQLTHQAYHDPLTDIPNRVLFNDR 938

Query: 551  LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
            L   L  +  + N    VM +D+D++K +ND+LG ++GD +L  + +++   L+  D +A
Sbjct: 939  LNVALAHAKRN-NEMLAVMFLDLDRFKLVNDMLGHSIGDRLLQEVAKKLSICLRKGDTIA 997

Query: 611  RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            RL G+ F ++L    +  + A  A  + K+   P+ L   E  +TASIG A + S    +
Sbjct: 998  RLGGDEFTLLLPQIKSEKEAAKIAQKILKAFQKPVTLSGHEFYITASIGVALYPSDGEKA 1057

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728
              ++KNA+ AMY AK +G N  + +  +  +    R+ ++  L  A+E  EL + Y P++
Sbjct: 1058 EILMKNADTAMYRAKEQGRNTYQLYTPAMNKKIVERMAMENSLRHALERRELVVYYQPLV 1117

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
             +    I G+EALI+W H + G +  +EF+ +AEE  +I  I  ++L        +W+D 
Sbjct: 1118 CIRTGRITGMEALIRWRHKELGLVPPAEFIPLAEETGLIIPIGEWVLRTACAQNKAWQDA 1177

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                P+ + +N+++       L   +   + +T   P  ++L  +ES+ M + + +  +L
Sbjct: 1178 -GYMPVRVTVNLSAYQFQHQNLVNTVAKTLKQTGLHPQYLELEITESIAMQDVDYTVDVL 1236

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             +LR++G+ + +DDFGT  S L YL   P +T+K + S +          AI+ +II + 
Sbjct: 1237 RKLREMGVQIAIDDFGTGYSSLRYLKRFPINTLKIDRSFVRDIACDPNDAAIVSTIIVLC 1296

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +N+   +IA+ +  E  +  L    C  +Q    + P+      +LLK   
Sbjct: 1297 RNMNLKVIAEGVETEEQLNFLKNQHCYEMQGYFFSQPVPEKEFEELLKRYN 1347



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442
            T    V+      +       +QS A+  S D +   +   + +      A I G A  
Sbjct: 648 ITGAIEVVRDITERKKTEELLRQQSAAMRASMDGMAILNTNGEYIYMNEAHARIYGYANP 707

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G    W       +RD F   +   + Y++G ++ E   R AD       + +  +
Sbjct: 708 AQLIGK--TWHILYDEEERDRFEKEVLPAL-YKQGYIRTEAVGRKADGSLFPQEVSLTLI 764

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530
                     + +  DITE+K++ + I 
Sbjct: 765 EGG-----GTVCVVRDITERKQAEQAIW 787



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 8/238 (3%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           L     + P +   +   T     +     + +       + +    A +      +   
Sbjct: 443 LAIEIPFAPYLKEMLHNTTDYLAGMLGFTLVAFLLGSLLSKHLTGPLAKLASVTTDLPCR 502

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           ++  + +         +  LV+    +   + Q+ L           +  +    V G G
Sbjct: 503 ISNREEIKWPYSPFTEMNSLVVNFRSMAGKLQQNFLELQQARMKAEEEKNKIEAIVAGIG 562

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D +   D     +        ++G       G             RD         V  +
Sbjct: 563 DGISIQDTNYRVIFQNRIQRELMG----EAVGQYCYQAY----EGRDQVCPGCPVAVSLQ 614

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            G +Q   R         ++ +   P+ ++ G I   I +  DITE+KK+ E +   +
Sbjct: 615 EGTIQTVERCPELKKGSLYIEVTSAPLKDAAGKITGAIEVVRDITERKKTEELLRQQS 672


>gi|13476242|ref|NP_107812.1| hypothetical protein mll7513 [Mesorhizobium loti MAFF303099]
 gi|14027003|dbj|BAB53957.1| mll7513 [Mesorhizobium loti MAFF303099]
          Length = 554

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 236/553 (42%), Positives = 374/553 (67%), Gaps = 2/553 (0%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           + GSGD VWDWD++RDRV T PD++  LGLA  S+ G  RNWLP +H +DRD FRT LD 
Sbjct: 1   MAGSGDTVWDWDVLRDRVVTKPDVSIQLGLAPNSLGGAARNWLPVLHADDRDTFRTTLDV 60

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            + +RRGR+   FR+R AD  +HW  +R RP+  S+G+++R +G   D+TEQKKS E +L
Sbjct: 61  VLEHRRGRVAQNFRLRGADGHYHWFALRARPVIGSDGEVIRCVGTMVDVTEQKKSEERLL 120

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
            +A  DNLTG+PNR+ F++RL  I+ ++ T++ +RPTV VIDID++K++ND LGI+ GD 
Sbjct: 121 HDAVHDNLTGLPNRELFMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDT 180

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L+++ RR+  LLK  D L+R +G++F ++L+SE +  +IA  A A++ +I  PI   +R
Sbjct: 181 ILLTIARRLHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKR 240

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIK 708
           EI +TASIG  +WTS++ ++ +M+K+AELAM+ AK  GG+ +E FR +     +DR+  +
Sbjct: 241 EIVLTASIGLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFE 300

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+E  E  L Y PI+RL D  + G EAL++WDHP+ G I  ++F+ +AE   +I 
Sbjct: 301 SDLRRAIERREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIV 360

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + LF +++ A D+  W+ Q    P+ + +N++S+ L+  +L   ++++I++    P   
Sbjct: 361 QLGLFAMQQAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCF 420

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+VM NPE++  +L +L+++GI L+LDDFGT  S L+YL   PFDT+K + S +
Sbjct: 421 RLELTESLVMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFV 480

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +T KR  +L+S++ MA  +  +++A+ I  E D  EL +MGC+Y+Q     +P+  + 
Sbjct: 481 DDNTPKRAVLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQ 540

Query: 949 ILKLLKERFPLVK 961
           +LK LKE++PL +
Sbjct: 541 VLKTLKEQYPLTQ 553


>gi|317127772|ref|YP_004094054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
 gi|315472720|gb|ADU29323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
          Length = 1016

 Score =  608 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 156/610 (25%), Positives = 285/610 (46%), Gaps = 17/610 (2%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               +        LV      +  + FTV    L      Q I S  E+  +    + D +
Sbjct: 409  WGFIAIVGQVDELVLISAADITQVSFTVSAASLERDELFQQIESIAEQLEIVSSTTNDGI 468

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
            WDWDI  +++        I      S+     ++L  +H  D +N          Y    
Sbjct: 469  WDWDINTNQIHWNVRSLDIFRSVDESLPTDSESFLNLVHPEDCENVIESFKRH-QYEGSS 527

Query: 479  LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            L+ EFR++    +  W+ +    + N NG+++R IG   +I+E+K+  + I+  AF D L
Sbjct: 528  LKMEFRIQGGKEEEMWVYLTGDSIRNENGEVIRIIGSITNISEKKQQEKQIMHLAFHDGL 587

Query: 539  TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
            TG+PNR+   DRL   +  +    + +  +++ID+D++K IND LG   GD+++  +   
Sbjct: 588  TGLPNRRLLRDRLEIAMAQADRY-HFKLGILMIDLDRFKVINDTLGHHAGDELIQKVAEV 646

Query: 599  I----------GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            +              +    +ARL G+ F I+L       ++   A  + +    P  + 
Sbjct: 647  LELTIRSSDTISRGKQENATVARLGGDEFIILLTHITEVTELQTVANRIIEKFKEPFFIQ 706

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706
              ++  +ASIG + +  +      +   A++AMY AK  G N +E +         +R  
Sbjct: 707  NHDVFTSASIGISVYPDNGRDFDSLTGCADIAMYRAKENGKNQMEIYSSEINTLTMERFT 766

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            ++  L  A+E  E  L Y P   L + E++G+EAL++W+    G +S  EF+ +AEE  +
Sbjct: 767  MENQLRKALEREEFVLHYQPQFNLKNTEVIGIEALLRWNSSDRGIVSPMEFIPLAEETGL 826

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  I L++L+   R    W DQ + P I + +NI+++ L   +  + +++++  T     
Sbjct: 827  IIPIGLWVLKEACRQNKYWIDQGHRPKI-VSVNISARQLQQKDFVQTVKSILEVTQLPTQ 885

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             + L  +ES  + N + S  +L  L ++GI + +DDFGT  S L+ L  +P   +K + S
Sbjct: 886  YLCLEITESTAIKNIDISMNMLKELGELGIKIAIDDFGTGYSSLAMLKQLPISNIKIDKS 945

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +      +   AI+++II MA ++E T+ A+ +  E     L +  C+Y+Q    + PL
Sbjct: 946  FIRDMDVDKDDAAIVKAIIAMAHSLELTVTAEGVETEDQKNILLQEKCNYLQGYLYSKPL 1005

Query: 945  GFNSILKLLK 954
                 L+ ++
Sbjct: 1006 PAEECLRFVQ 1015


>gi|83648396|ref|YP_436831.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636439|gb|ABC32406.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 966

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 177/954 (18%), Positives = 365/954 (38%), Gaps = 33/954 (3%)

Query: 16  LILVLFLLWMVSPSFAIEP-INISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           +  +  L  M   + A +  ++       +      R +  +    ++  A     I+ +
Sbjct: 23  VAAMALLCLMSLHAQADDVNVHAGEFPPTI---PQVRHFAAEIGSSELEQARQSLRIAPK 79

Query: 75  IEVS--ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISV-- 130
           I  S        +  W  F L N S    E  + + +  L     F   LG  +      
Sbjct: 80  ISASQINFGFTGKEHWFAFGLLNRSSDSRELFLNLGNPLLDNIELFLFRLGESQPEYAIS 139

Query: 131 TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSF 188
           + ++    +R  N  + VF + +        ++++   +     + LWEP+ +    +  
Sbjct: 140 SGAQRPFHERPINHPNFVFPLQLAGDTGYEVVIKVDATSSIQVPMSLWEPSQFTAYNHKE 199

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT-FAMAWVVLGYISIDFGFLSKLVNLPS 247
               G ++GV  ++A +  + ++  R    +    A+    L   S+     +       
Sbjct: 200 ASLSGALLGVIGIMAAYNLMLFLFLRDKGYLYFTAALGGYALAEASLCGLAYAYFWPDNP 259

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
                          ++L +F   +L        +            +   ++F+     
Sbjct: 260 TWNAKSLVFFINLCLAALALFTRSFLSLPERLPAIARGFAHIAGWCLLCALLAFFASNTA 319

Query: 308 AS-IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-ND 365
              ++ + +A   ++     +Y     +  A     A+  +    I         L  N 
Sbjct: 320 MLKLSLLNIAITPMFGYLTGLYLLRSNFRPARYFTLAYTFLVFASIVFCAGKVGLLPLNS 379

Query: 366 IIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +   A   G+V +V+ +   +   +     A  +       + E+       S + ++  
Sbjct: 380 LTGHATQFGVVGMVLALSLALADRLKGEKSAREFAQLQATENLEKYRAIYENSLEGMFRL 439

Query: 422 DIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           D     +   P  A +LG      +    R+    I +   ++ R +    +        
Sbjct: 440 DAKGALMACNPAFAQLLGACNEKELVSNTRDLSGMIPLQ--EDARRLFFLSLKQYGHVFG 497

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           +E R +  D +  W  I  R +    G      G   DITE+K++ + +   A  D LTG
Sbjct: 498 FEARCQRLDGKQFWATIFARQVVTPGG-AGFVEGSIVDITEKKENEQQLHYLARHDPLTG 556

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR  F  RL   L  S  +  L+  ++ +D+D++K +ND  G A GD++L  +     
Sbjct: 557 LLNRTEFEYRLNNALVRS-REQGLQHALLFMDLDQFKIVNDTSGHAAGDELLRQIAVMFR 615

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIG 659
           + L+  D LARL G+ FGI+L       K ++ A  +R  ++     L E+  +V  SIG
Sbjct: 616 QHLRERDSLARLGGDEFGILLERCG-IEKASEIAHRLRNEVSEFRFALKEKVFSVGVSIG 674

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCLAV 715
               T++  +  E+   A+ A Y AK  G N +            R   + +   L  A+
Sbjct: 675 IVPITAATPSIEEIFSLADTACYAAKDAGRNRIIVHNEKTGEIIRRQSEMQVVTALQEAI 734

Query: 716 ENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           + ++L L    I  L  E      E L++        +    F+  AE   +I++++ ++
Sbjct: 735 KQNQLVLYKQNIGALKPELRGERYEILVRLKQGAD-ILPPGAFLPAAERYNIIRSLDRWV 793

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++   + + +   Q       + IN++S+ + D+E  + +    +K      ++    +E
Sbjct: 794 IDAYFKWLHARPGQLERLS-QVNINLSSQTINDSEFADFLLTAFTKYSIPLDKVCFEITE 852

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S  + +   +  L+  +R  GI   LDDFG+  S  SYL  +P +++K +GS +      
Sbjct: 853 SSAISSLVETTALVQNMRAKGIKFALDDFGSGFSSYSYLKSLPVNSLKIDGSFVRDILSD 912

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              +A++RSI  +A  +   ++A+ +  E  ++ L  +  D++Q  H+  P+  
Sbjct: 913 PVDLAMVRSITEVAHIMGLNVVAEFVENEETVERLKSLDVDFVQGYHIHKPMPL 966


>gi|148657976|ref|YP_001278181.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148570086|gb|ABQ92231.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus sp. RS-1]
          Length = 892

 Score =  606 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 164/582 (28%), Positives = 297/582 (51%), Gaps = 5/582 (0%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I+    + + +  +   +Q + +  ER +L V  +GD VW+W++    +T +     +LG
Sbjct: 309 IIGSVAIFRDITVSFQMAQALRASEERYTLTVQATGDGVWEWELRTGIMTFSRRWKEMLG 368

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                +      W   +H +DRD     L +++       ++E+R+   D  + WM  R 
Sbjct: 369 FQDQEIGNLPSEWFNRVHPDDRDGLDVRLTAYLRRLITSFEHEYRILHRDGAYRWMRCRG 428

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +++G+    +G   DIT++K + + +  NAF D+LTG+ NR  F+DRL  ++  + 
Sbjct: 429 IAIWDADGNAAHIVGSQTDITDRKLAEQRLWYNAFHDSLTGLANRARFMDRLGHVIARAR 488

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +    V+++D+D++K IND LG  VGD +L+++ RR+ + L+  D LA L G+ F +
Sbjct: 489 RSASPPYAVLILDLDRFKLINDSLGHLVGDQLLIAIARRLEQSLRPGDTLAHLGGDEFAV 548

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAE 678
           +L   +      + A  +      P +L E E+  +ASIG A   +    + S+ML++A+
Sbjct: 549 LLEDLSEPHAAVNVAERILHLFEEPFHLNEHEVFSSASIGIALSDNLRYHSPSDMLRDAD 608

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM+HAK  G      F   +      R+ I+ DL   +E +E ++VY PI+ L  +  V
Sbjct: 609 TAMHHAKMEGRARYAVFHPTMHDRARPRLQIEIDLRRGIERNEFFVVYQPIVELSTQRTV 668

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP+ G ++ +EF+ IAEE  +I  I   +L    R + +W+ +     + +
Sbjct: 669 GFEALLRWRHPQRGIVTPAEFIAIAEETGLIVPIGQMVLREACRQLSAWKQRHPERTLAM 728

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++ + + D +L     ALI +       ++L  +E+ ++ + + +  +L +LR +G+
Sbjct: 729 NINLSPRQIADPDLVHRTAALIDEYRLDADALRLEITETAIIEHGDAAGRVLQQLRALGV 788

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S LSYL   P  T+K + S ++      +   I+RSII +A+++   +I
Sbjct: 789 QICIDDFGTGYSSLSYLHRFPIATIKIDRSFVSQIHRSHENTEIVRSIISLARSLGMAVI 848

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+    E  +  L  M C Y Q    A  L       +L   
Sbjct: 849 AEGTETEEQLLRLRSMSCAYGQGWLFAHALEPAEATAMLDRE 890



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 3/141 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   + ++       +  +          +    D V   D   + V   P   T+ G  
Sbjct: 181 LETRIAEYSATVEDTALALRQQTITLHAILESLSDAVVVIDREGNLVHANPVAHTLFGDR 240

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAAD-NQFHWMIIRI 499
              +          +  +        L   +  R   +   EF + + D +    +    
Sbjct: 241 LLDVTPQATAPA-LLDTDGVPCATDQLPLAIALRGVEVDSSEFLLASVDPDAVRRIRATA 299

Query: 500 RPMSNSNGDILRYIGIANDIT 520
           RP+ +SNGDI+  + I  DIT
Sbjct: 300 RPLRDSNGDIIGSVAIFRDIT 320


>gi|172036947|ref|YP_001803448.1| hypothetical protein cce_2032 [Cyanothece sp. ATCC 51142]
 gi|171698401|gb|ACB51382.1| hypothetical protein cce_2032 [Cyanothece sp. ATCC 51142]
          Length = 1250

 Score =  606 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 163/581 (28%), Positives = 282/581 (48%), Gaps = 8/581 (1%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILG 439
            L    +I  +       Q +    +R    +    D+VW +D      +   P     LG
Sbjct: 657  LGSLGMITDISQRKKMEQALSESEQRLEGILNSIQDVVWSFDANFSKLIYINPVAQMTLG 716

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +   ++     WL  IH  D++  +      +    G  +Y++R+   +++  W+  R+
Sbjct: 717  FSLEKLYDNPHLWLQLIHPEDQELVQ--YHRQIVKEIGYTEYKYRIIRNNDKIRWLSSRM 774

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            R + N   +++R  GI +DITEQK++ E +  NA  D LT +PNR  F+DRL   ++   
Sbjct: 775  RCVYNDKNNLIRIDGIDSDITEQKRAEEQLQYNATHDPLTNLPNRILFMDRLEHAIERQK 834

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                    V+ +D+D++K IND LG A+GD +L  +  R+   L+  D LARL G+ F I
Sbjct: 835  RHPKFIFAVLFLDLDEFKVINDSLGHAIGDQLLQEIALRLQNGLRSDDTLARLGGDEFTI 894

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L    +       A  +   +  P  L ++ I +  SIG A  +S    ++E+L++A+ 
Sbjct: 895  LLEDIEDIKDAIKIAKRIHLDLTQPFILEDQNIFINTSIGIALNSSGYQEAAEILRDADT 954

Query: 680  AMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK  G      F          R+ ++ DL + +   E  L Y PII L    + G
Sbjct: 955  AMYRAKADGKACYAIFDHKMHERAVSRLQLETDLRIGINKQEFCLYYQPIISLKTGHLTG 1014

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFI 796
             EALI+W HP+   IS  +F+ IAEE  +I  I  + L+   + +  W++Q      + +
Sbjct: 1015 FEALIRWYHPQKNLISPGQFIPIAEETGLIIPIGEWTLKEACQQLKKWQNQFPHYSHLKV 1074

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N++SK L    L + +  ++  T      +KL  +E+++M N + +  +L ++++  I
Sbjct: 1075 AVNLSSKQLKYTNLIDTIDQILRDTQLDSKNLKLEITETLLMENLQAATEILLKIQERDI 1134

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
             + LDDFGT  S LSYL   P +T+K + S +           I+R+I+ +A  +   II
Sbjct: 1135 EICLDDFGTGYSSLSYLHRFPVNTLKIDRSFVMRMEPDNENAEIVRAIVSLAHILGLDII 1194

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +  E+ + +L R+GC+  Q    A PL  + +   L+ 
Sbjct: 1195 AEGVETELQLAQLRRLGCEQGQGYLFAKPLPASEVENWLRN 1235



 Score = 94.6 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++ +       + +    E+    V  + + +W  D           +A +LG     M
Sbjct: 537 SLRDITENYEAQEALLESEEKYRQIVETATEGIWIIDQDNKTTFVNQQMAKMLGYEMNEM 596

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                N   ++   D    +  +            ++FR R  D Q  W I+   P+ + 
Sbjct: 597 MDK--NLFDFVDFEDNIRVQEKIQQRRQGIAETHDFKFRCR--DGQELWTIVSTNPLFDH 652

Query: 506 NGDILRYIGIANDITEQKKSLE 527
            G+ L  +G+  DI+++KK  +
Sbjct: 653 QGNYLGSLGMITDISQRKKMEQ 674



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + V + V         +    E+  L    S   +   ++    +     +  ++G ++ 
Sbjct: 302 YAVARDVTEWKKIELALRKSEEKFRLLFDKSPTAMGLANMEGKLINVNEALCQLVGYSAE 361

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +           H +D +  + + +  +         E R      Q  + + +   + 
Sbjct: 362 ELLTKGCA--DITHPDDLEKEKKLFNQLLSGTINSFSLEKRYITKSKQIIYGLHQATLIR 419

Query: 504 NSNGDILRYIGIANDITEQ 522
           +  G+ L  +G   DIT+Q
Sbjct: 420 DIEGNPLHLLGQTIDITQQ 438



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                +  LG +   +      +L ++H +D+ +    L++    ++     E R R  D
Sbjct: 226 INRVFSRTLGYSVAELKSKP--FLEFVHPDDQLSTVAELENLTQGKQNC-HCENRYRCQD 282

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             + W+               +   +A D+TE KK
Sbjct: 283 GSYRWLAWTSVANIEEK----KIYAVARDVTEWKK 313



 Score = 42.6 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 23/129 (17%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    ER    +    D +   +              + G ++  +           H 
Sbjct: 444 ALQESEERLGRIISTISDGLLVVNTQGKVRFINDAGVKLFGRSAKQLMD---------HP 494

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                    L                ++    +     +R+  ++   G+   Y+    D
Sbjct: 495 LGLPLGNDQLTEIF------------IQQPQGKLIIAQMRVADITW-QGE-SAYLLSLRD 540

Query: 519 ITEQKKSLE 527
           ITE  ++ E
Sbjct: 541 ITENYEAQE 549


>gi|289579240|ref|YP_003477867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter italicus Ab9]
 gi|289528953|gb|ADD03305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter italicus Ab9]
          Length = 792

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 149/572 (26%), Positives = 281/572 (49%), Gaps = 5/572 (0%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q+++      + +    ER  L V G+ D +WDWD++ D    +     I+GL    ++ 
Sbjct: 190 QNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDIIGLDKEVVNN 249

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W  +IH  D       L + +  +      E+R++  D ++ W++ R + + N  G
Sbjct: 250 YRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSRGKALWNEEG 309

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +R  G   DITE+K+    +   AF D LT +P R+ F+DRL   +  +  +   +  
Sbjct: 310 RAIRMAGSHTDITERKQMESKLKHMAFYDPLTDLPRREVFMDRLKIAMANAKRNGK-KLA 368

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V  +D+D +K IND LG  +GD +L  + +++   L+  D ++R+ G+ F I+L    + 
Sbjct: 369 VFFLDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFVILLPDIIDI 428

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  + +    PI     E+ VT SIG A +         ++KNA++AMY AK  
Sbjct: 429 EDTNKVANRILELFNQPIKFNNHELYVTISIGIAIYPDHGKNEKAIVKNADIAMYRAKRD 488

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N  + F   + +   V   I+ DL +A+EN + +L Y P++ +   ++  +EAL++W 
Sbjct: 489 GKNGFQYFDSITRKEVEVANTIRRDLRVALENGQFFLCYQPLVDIKTGKVASMEALLRWQ 548

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HPK G IS   F+ IAEE   I +I  +ML    R +  W +        + +N++   L
Sbjct: 549 HPKKGLISPIHFIPIAEETRQIISIGEWMLRTACRQMKEWLNM-GYSGFSVSVNVSVHQL 607

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +  + +  ++++    P  ++L  +E+V++   +     L RL+++G+ + +DDFGT
Sbjct: 608 QQPDFAKVVLDILNEIDLEPRFLELEITETVLIEAMDTVARNLYRLKEVGVKIIIDDFGT 667

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           + S   Y+     D +K + S ++    E   AI+ +II +   ++  + A+ +  +  +
Sbjct: 668 ENSSFKYIQKFMVDGLKIDRSFVSNIKVEVNKAIVDAIIFLGHRMKLGVTAEGVETKEQL 727

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L   GCD +Q  + + PL  +  ++++++ 
Sbjct: 728 DYLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 759


>gi|297545418|ref|YP_003677720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843193|gb|ADH61709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 792

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 149/572 (26%), Positives = 281/572 (49%), Gaps = 5/572 (0%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q+++      + +    ER  L V G+ D +WDWD++ D    +     I+GL    ++ 
Sbjct: 190 QNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISKRWKDIIGLDKEVVNN 249

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W  +IH  D       L + +  +      E+R++  D ++ W++ R + + N  G
Sbjct: 250 YRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWVLSRGKALWNEEG 309

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +R  G   DITE+K+    +   AF D LT +P R+ F+DRL   +  +  +   +  
Sbjct: 310 RAIRMAGSHTDITERKQMESKLKHMAFYDPLTDLPRREVFMDRLKIAMANAKRNGK-KLA 368

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V  +D+D +K IND LG  +GD +L  + +++   L+  D ++R+ G+ F I+L    + 
Sbjct: 369 VFFLDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFVILLPDIIDI 428

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  + +    PI     E+ VT SIG A +         ++KNA++AMY AK  
Sbjct: 429 EDTNKVANRILELFNQPIKFNNHELYVTISIGIAIYPDHGKNEKAIVKNADIAMYRAKRD 488

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N  + F   + +   V   I+ DL +A+EN + +L Y P++ +   ++  +EAL++W 
Sbjct: 489 GKNGFQYFDSITRKEVEVANTIRRDLRVALENGQFFLCYQPLVDIKTGKVASMEALLRWQ 548

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HPK G IS   F+ IAEE   I +I  +ML    R +  W +        + +N++   L
Sbjct: 549 HPKKGLISPIHFIPIAEETRQIISIGEWMLRTACRQMKEWLNM-GYSGFSVSVNVSVHQL 607

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +  + +  ++++    P  ++L  +E+V++   +     L RL+++G+ + +DDFGT
Sbjct: 608 QQPDFAKVVLDILNEIDLEPRFLELEITETVLIEAMDTVARNLYRLKEVGVKIIIDDFGT 667

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           + S   Y+     D +K + S ++    E   AI+ +II +   ++  + A+ +  +  +
Sbjct: 668 ENSSFKYIQKFMVDGLKIDRSFVSNIKVEVNKAIVDAIIFLGHRMKLGVTAEGVETKEQL 727

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L   GCD +Q  + + PL  +  ++++++ 
Sbjct: 728 DYLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 759


>gi|254559422|ref|YP_003066517.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
            DM4]
 gi|254266700|emb|CAX22483.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
            GAF and two PAS/PAC sensor domains [Methylobacterium
            extorquens DM4]
          Length = 1028

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 165/592 (27%), Positives = 300/592 (50%), Gaps = 11/592 (1%)

Query: 375  LVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            L ++ + +  T  +        SQ  + +  ER +LA+    D ++DW++   +V  +  
Sbjct: 424  LRVVGLNLDITDRRTTEDALAQSQTHLRASEERLALALDSGNDGLFDWNVTTGKVWYSDR 483

Query: 434  IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              T+LG   G +   I +W   +H +D    RT+L    G        E R+R+   ++ 
Sbjct: 484  WQTMLGYKPGEIEPHILSWERLVHPDDLHQARTLLTEHFGELSATYSSEHRLRSKSGEYT 543

Query: 494  WMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W++ R R +  +  G  LR +G + DITE+K S + I   A  D LTG+PNR  F + L 
Sbjct: 544  WVLGRGRVVARDEQGAPLRMVGTSIDITERKASEQRIAYMARHDVLTGLPNRTVFHEHLE 603

Query: 553  TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
              L         +  ++ +D+D++K IND+LG   GD++L  +  R+   ++  D++ RL
Sbjct: 604  QRLAEVRR-GRGQAALLCLDLDRFKSINDMLGHPAGDELLCQIATRLRATVRGGDVVVRL 662

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             G+ F II+   +++ + +  A  +  ++  P++L    +TV  SIG A   ++  TS  
Sbjct: 663  GGDEFAIIVSHLDHARQASVLAQRVIDAVGQPLDLGGHLVTVGISIGIAFAPTNGDTSET 722

Query: 673  MLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
            + KNA+LA+Y AK    N    +   + +    R+ ++ ++  A+      L Y P++RL
Sbjct: 723  LFKNADLALYRAKASARNTYCFYEAGMDAAVEARMQLEFEMREAITCGSFALHYQPVLRL 782

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             D  IVG EAL++W HPK G I+  EF+  AEE  +I  +  + L+   R+  SW D   
Sbjct: 783  ADHRIVGFEALMRWPHPKRGMIAPDEFIPSAEETGLIVPLGSWALQEACREAASWPDH-- 840

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
               + I +N+++       L +G+ + ++ +  +P R+ L  +ESV++ + E     L R
Sbjct: 841  ---LRIAVNVSAVQFQQPGLEQGVMSALAASGLAPHRLVLEVTESVLVQDAEAVIACLHR 897

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNI 909
            L+ +G+ + LDDFGT  S LSYL   PFD +K + S ++        AI+R+++ +A  +
Sbjct: 898  LKSLGVRIALDDFGTGYSSLSYLRRFPFDRIKIDRSFISEIGDPGAAAIVRAVVGIAMQL 957

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              T+ A+ +     ++++   GC  +Q   V+ PL  +  ++ +     + +
Sbjct: 958  GATVTAEGVETTAQLEQVRSEGCMEVQGYLVSRPLPADRAIEFISSSASIER 1009



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +         +    +   LA   +G  VW  D+  D V  +P  A + G    
Sbjct: 291 LGTALDIEDIVTARSTLEHTTDLLRLAQEAAGAGVWQRDLDDDVVRHSPMSARMHGFLGE 350

Query: 444 -SMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMI 496
             + G     I  W   +H +D    R +    +       + EFRVR +   + + W++
Sbjct: 351 PDLSGWIAVSIAEWAARVHPDDLAQVRAMHAGALRN-GTTYKVEFRVRQSADMDDYRWLM 409

Query: 497 IRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              R + +  +G  LR +G+  DIT+++ + +     A   + T +   ++  +RL   L
Sbjct: 410 GFGRVIRDETSGRPLRVVGLNLDITDRRTTED---ALAQ--SQTHL---RASEERLALAL 461

Query: 556 D 556
           D
Sbjct: 462 D 462



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 16/287 (5%)

Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316
           +  AL S  I F+ +     +W      I   G          +     V   +    + 
Sbjct: 39  TAAALFSVPIAFVSLVDSDRQWFKAKCGIAAEGTPRDVAFCAYAILSDDVLV-VENAAVD 97

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA---ITKRLDNDIIQPALVG 373
                    +    ++ Y  A L++     I +  I ++         +    +Q     
Sbjct: 98  PRFAINPLVVGDLAVRFYAGAPLIL--RSGIRVGTICIFDTKPCSFSEMQRTQLQDLARI 155

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVW-DWDIVRDRVTTT 431
            +  I +  G   I+  LA    S+ + +  E R          +VW         + T 
Sbjct: 156 VVAHIELHQGRLTIEAALAERTRSEALIAANEARYRALADALPQMVWVMTSADGSAIYTN 215

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
               T  G    S+           H  D +         V +       E R+R  D  
Sbjct: 216 ERFRTYYG----SIGPQREERTSRNHPADTERMAEEWQRAVTHE-HTYAVEGRLRRHDGT 270

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           + W  + + P+   NG ++ ++G A DI +   +   +      D L
Sbjct: 271 YRWHKLVMVPVR-QNGTVVEWLGTALDIEDIVTARSTLEH--TTDLL 314


>gi|254478017|ref|ZP_05091401.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214036021|gb|EEB76711.1| PAS fold family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 793

 Score =  605 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 147/581 (25%), Positives = 285/581 (49%), Gaps = 5/581 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++     + Q+++        +    ER  L V G+ D +WDWD++ D    +     I+
Sbjct: 179 LMAREEELRQNLIEIQRQQDELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDIV 238

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL    ++     W  +IH  D     + L + +  +      E+R++  + ++ W++ R
Sbjct: 239 GLDKEVVNNYYETWTKFIHPRDVKTVISNLRNHLEKKTPFYLCEYRIKTKEGRYIWVLSR 298

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + + +  G  +R  G   DITE+K+    +   AF D LTG+P R+ F+DRL   +  +
Sbjct: 299 GKALWDEEGRAIRMAGSHTDITERKQMESKLKYMAFYDPLTGLPRREVFMDRLKIAMADA 358

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +   +  V  +D+D +K IND LG  +GD +L  + +++   L+  D ++R+ G+ F 
Sbjct: 359 KRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEFV 417

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L +  N       A  + +    PI     E+ VT SIG A +         ++KNA+
Sbjct: 418 ILLPNIINIDDTNKVANRILELFNQPIKFNNHELYVTISIGIAIYPDHGKNERAIVKNAD 477

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N  + F   + +   V   I+ DL LA+E  + +L Y P++ +   ++ 
Sbjct: 478 IAMYKAKRDGKNSFQYFDSITRKEVEVASTIRRDLRLALEKGQFFLCYQPLVDIRTGKVT 537

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W HPK G I+   F+ IAEE   I +I  ++L    + +  W +        +
Sbjct: 538 SMEALVRWQHPKKGLINPIHFIPIAEETRQIISIGEWVLRTACKQMKEWLNMGYY-GFSV 596

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L   +  + +  ++++    P  ++L  +E+V++   +     L RL+++G+
Sbjct: 597 SVNVSVHQLQQPDFAKVVFDILNEIELEPRFLELEITETVLIEAMDTVVRNLYRLKEMGV 656

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIA 915
            + +DDFGT+ S   YL     D +K + S ++    E   AI+ +II +   ++  + A
Sbjct: 657 KIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAIIFLGHRMKLGVTA 716

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +  +  +  L   GCD +Q  + + PL  +  ++++++ 
Sbjct: 717 EGVETKEQLDYLVESGCDKVQGYYFSKPLPPDEAIRMVQKE 757


>gi|82617851|gb|ABB84845.1| Multidomain signal-transduction protein [uncultured delta
           proteobacterium DeepAnt-32C6]
          Length = 955

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 158/568 (27%), Positives = 285/568 (50%), Gaps = 5/568 (0%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           V A     + +    ER  LAV GS D +WDW +    V  +     +LG     +   I
Sbjct: 360 VHALEQAEEALRQSKERYELAVRGSNDGIWDWSLDSGVVHYSTRWKQMLGCELTDVKETI 419

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             W   IH +D    + +L+  +       + E R+R  D ++ WM+ R   + + +G  
Sbjct: 420 PEWFDRIHPDDLVRVKRLLNKHLSGELPHFEAEHRMRHRDGKYSWMLTRGEAVRHPDGTP 479

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            R  G  +DIT +K + + +  +A+ D L G+ NR  F++RL   +      D+    V+
Sbjct: 480 YRIAGSQSDITARKIAEDQLRHDAYHDVLCGLANRALFMERLERAIKRLNRRDDYLYAVL 539

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG   GD +L+ L+ R+   ++  D LARL G+ F ++L    + L 
Sbjct: 540 FVDLDRFKNINDGLGHLAGDSLLIELSTRLSGYVRETDTLARLGGDEFAVLLEDICSPLD 599

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A   ++++  P  L  +E+ VTASIG A    S   + E+L++A+ A+++AK  G 
Sbjct: 600 AQRAAQRFQEALTTPFQLKGQEVFVTASIGIALGNRSYSGAEEVLRDADTALFYAKDGGR 659

Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              E+F+  +      R+ ++ DL  +V+  + +LV+HPI+ +   EI G EAL++W H 
Sbjct: 660 ARHETFQRGMHLRAQARLQLENDLRRSVDRGDFHLVFHPIVDVESCEIAGFEALVRWMHH 719

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLL 806
             G +S  +F+ + EE  +I  +   ++E     I  WR +     P  I IN++ + L 
Sbjct: 720 DRGQVSPEDFIGVCEETGLIIPLGKLVIEGACEAIAEWRQRHPELSPPTISINVSPRQLS 779

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              L + ++  + +   +P  + L  +ES ++ + + S  +L  L+ +G+ L +DDFGT 
Sbjct: 780 AEGLVDDVRHALERWKLAPQLLTLEITESALLDDIDSSIQVLKDLKDLGVGLQIDDFGTG 839

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL  +P D +K + S +        +  I+ +II +A +++  + A+ +     +
Sbjct: 840 YSSLSYLSQLPIDALKIDRSFLRDMTSDTNQFNIVSAIITLAHSLDLEVTAEGVEHVAQL 899

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952
            EL R+ C++ Q  +  +P+  +    L
Sbjct: 900 DELRRLRCNHAQGYYFTTPISSDQACAL 927


>gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 900

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 165/566 (29%), Positives = 281/566 (49%), Gaps = 5/566 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + V  T   ++ + +  ER +LA   + D +WDWD+   ++  +      +G    
Sbjct: 323 VAVFRDVTITRQAAEALRASEERYALAAQAANDGLWDWDLTTGKIYFSQRWKASIGFQDH 382

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      W   +H +DR+     L + +       +YE+R+R  D  + WM  R   + 
Sbjct: 383 EIGNDPSEWFDRVHPDDREGLEVRLVAHLHRLISGFEYEYRMRHHDGAYRWMSCRGIAVW 442

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N+ G  +R +G   DI  +K   + +L  A  D+LTG+ NR  F+DRL  ++  +    +
Sbjct: 443 NAGGQAVRIVGSQTDINARKLVEQRLLHEALHDSLTGLANRSCFMDRLEHVVARTRRGAS 502

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D++K IND LG  VGD +L+++ RR+   L+  D LARL G+ F ++L  
Sbjct: 503 SPFAVLFLDLDRFKLINDSLGHVVGDQLLIAIARRLERCLRPGDTLARLGGDEFAVLLED 562

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMY 682
            +        A  + + +  P +L   E+  +ASIG A   S    + +++L++A+ AMY
Sbjct: 563 LSEPQAALTVAERILRLLEEPFHLAGHEVFSSASIGIALNDSTRYHSPADVLRDADTAMY 622

Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  G +    F   +      R+ I+ DL   VE +E ++VY PI+ L  ++ VG EA
Sbjct: 623 HAKMEGRSRYAVFHSAMHDRARHRLQIETDLRRGVERNEFFVVYQPIVELNTQQTVGFEA 682

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G IS +EF+ +AEE  +I  I   +L    R +  WR +     I + IN+
Sbjct: 683 LLRWRHPHRGIISPTEFIDVAEETGLIVPIGQMVLREACRQLSEWRQRHPARTITMHINL 742

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + + + D  L +   AL++        + L  +E+ ++ + + +   L  LR +G  + +
Sbjct: 743 SPRQIADPHLVDDTIALLNAYHLDAGSLHLEITETAIIEHGDIASRALMHLRSLGAQICI 802

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG   S LSYL   P  T+K + S ++      +   I+R+II +A ++  T+IA+  
Sbjct: 803 DDFGAGYSSLSYLHRFPIGTIKIDRSFISQIHHSHENAEIVRTIIALAHSLGMTVIAEGA 862

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPL 944
             E  +  L  M C Y Q    A  L
Sbjct: 863 ETEEQLARLRSMSCPYGQGWLFARAL 888



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +   L  +   +   V +   A    +  +      Q   +   GD +   D     +  
Sbjct: 179 VEAELRRLNATLEERVAERSAAAEQSAAALRQQMLTQQSILDSIGDAIVVIDGDGRLLHV 238

Query: 431 TPDIATILGLASGSMHGPIRNWLPYI--------HINDRDNFRTILDSFVGYRRGRLQYE 482
            P    + G     +          +          +       +    +         E
Sbjct: 239 NPAARDLFGDRVVDLTPQATARASVLLLADDTSCPPDTLPLAVALRGEALDG------AE 292

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           F + + D+   W+ +  RP+ + +G I   + +  D+T  +++ E
Sbjct: 293 FLLASPDSAKRWLSVTARPLRDLDGAISGAVAVFRDVTITRQAAE 337


>gi|253996788|ref|YP_003048852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253983467|gb|ACT48325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 651

 Score =  602 bits (1552), Expect = e-169,   Method: Composition-based stats.
 Identities = 162/624 (25%), Positives = 288/624 (46%), Gaps = 10/624 (1%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY- 395
            + L    + IF     L+  I+   +  I+        + +  L+ +++ +  L     
Sbjct: 21  GIYLAFGLLWIFATDSALFSLISSYEEFSILNTYKGVAFIFVTALLLYSLFRRTLKKQQS 80

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q + +  ER   A+ GSGD VWDWDI  D V  +   + I G A   +          
Sbjct: 81  IEQSLQASEERWKFALEGSGDGVWDWDIPSDHVFRSARWSEIYGYAENEIIATAVAGREL 140

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIG 514
           +H +D     + + ++          EFR+R  D  + W + R   +  +++G  LR IG
Sbjct: 141 VHPDDLAILISDVQNYFAGNSNVYISEFRLRCKDGSWKWTLARGMTVSKSADGKPLRMIG 200

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DIT +K+S   +   A  D LTG+PNR  FLDR    +  +     +  T+M +D+D
Sbjct: 201 THTDITNRKRSEAQVTHLAHYDQLTGLPNRVLFLDRFKQDIKKAQRTGQI-VTLMFLDLD 259

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           K+K++ND LG  +GD +L  + RR+   ++  D +AR+ G+ F IIL   N+ + I   A
Sbjct: 260 KFKEVNDSLGHDIGDMLLKDVARRLENCVRDSDTVARMGGDEFTIILNDINSQVNIERIA 319

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   + MP +L +  I V+ SIG +++         +LKNA+ AMY AK +G N  + 
Sbjct: 320 QDILNQLTMPFHLGDEVIHVSTSIGISNYPKDDTEVELLLKNADQAMYVAKEQGRNRYQY 379

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   +      R+ +  DL  A+ +++  + Y PI+ L    I   EALI+W HP  G +
Sbjct: 380 FTPVMQEEALKRMRLISDLWGALNDNQFRVYYQPIVELATGAIFKAEALIRWQHPTRGLV 439

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELC 811
             ++F+ +AE+  +I  I  ++   +A  ++ W+     P + + +N +       ++ C
Sbjct: 440 GPNDFIPVAEDTGLIVDIGDWLFNEVASQMVKWKQHY--PNLQVSVNKSPVQFRSVHDNC 497

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
                 + +   S     +  +E +++   +     L   R+ G+ + +DDFGT  S L+
Sbjct: 498 SNWIERLEQLGLSGENFIVEITEGLLLDARDSVVSQLNAFREAGMKIAIDDFGTGYSSLA 557

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL     D VK + S  +  T     ++   +II M+  +   +IA+ +  +     L  
Sbjct: 558 YLRKFDIDFVKIDRSFTSNITPNSSDMVLCEAIIEMSHKLGMKVIAEGVETDEQRDLLRN 617

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
             CD+ Q    + P+  +   +LL
Sbjct: 618 ADCDFAQGYLYSKPITVDQFEQLL 641


>gi|257062218|ref|YP_003140106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8802]
 gi|256592384|gb|ACV03271.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8802]
          Length = 1143

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 175/579 (30%), Positives = 286/579 (49%), Gaps = 8/579 (1%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
               +I  +       Q ++   +R    +    D++W  D    + +   P I  + G  
Sbjct: 560  TLGLITDITKRKRTEQALYDSEKRLEGILNSLQDVIWSADPKTRQSLYLNPAIQLVYGRP 619

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                      WL  +H  D++     L   +   +G  +  +R+   D +  W+  R R 
Sbjct: 620  MEDFFRDPHLWLCMVHPEDQELVSHHLK--LLEDKGSTEVHYRIIRPDGETRWLHSRSRL 677

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +  G  LR  GI +DITE+K++ E +  NA  D LT +PNR  F+DRL   L+     
Sbjct: 678  VYDEQGKSLRIDGINSDITERKQAEEQLQYNATHDTLTQLPNRLLFMDRLEHALERRRRY 737

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +    V+ +D+D++K IND LG A+GD++L  + RR+ + L+  D LARL G+ F I+L
Sbjct: 738  SDPLFAVLFLDLDEFKVINDSLGHALGDELLREIARRLQKSLRADDTLARLGGDEFTILL 797

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               ++       A  + K +  P NL  +EI    SIG A        +SE+L++A+ AM
Sbjct: 798  EEIHDVKDAIKIAERIHKDLTRPFNLEGQEIFTNTSIGIALSNGEYEAASEILRDADTAM 857

Query: 682  YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G      F          R+ ++ DL  A+E  E  + Y PII L  + + G E
Sbjct: 858  YRAKAGGKACYAIFDQQMHASAVSRLQLETDLRRAIERQEFLVYYQPIISLQHDTLTGFE 917

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILI 798
            ALI+W HP+ G +  + F+ IAEE  +I  I  ++LE+ A+ +  W+ Q      + + +
Sbjct: 918  ALIRWQHPQQGLVPPARFIPIAEETGLIVPIGEWILEQAAQQLKIWQTQYRNYESLKMSV 977

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++SK L D  L   +  ++SKT    + +K+  +ES++M N + +  +L  LR+  I +
Sbjct: 978  NLSSKQLRDASLLGTIDRILSKTEIDNNALKVEITESILMENVQVAADVLIALRERNIEI 1037

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916
             LDDFGT  S LSYL   P +T+K + S +           I+R+I+ +A  +   IIA+
Sbjct: 1038 CLDDFGTGYSSLSYLHRFPVNTLKIDRSFVMRMRPNDENSEIVRAIVSLAHILGMEIIAE 1097

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I  E+ + +L  +GC+  Q    A PL  + +  LLK 
Sbjct: 1098 GIETELQLAQLKWLGCEQGQGYFFAKPLATSEVEALLKN 1136



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++++  +   +Q +    E+    V  + + +W  D           ++ ILG    
Sbjct: 436 LISLRNITDSYQANQKLAESEEKYRKIVETTNEGIWISDHHNKITFVNHQMSEILGYTVD 495

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M G   + L +I                    G   ++ ++R  D    W I+    + 
Sbjct: 496 KMMG--MSLLTFIDAAQLSLVEKSGQKTEQSLPGT--HDLKLRRQDGSELWAIVSTNALF 551

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDN---LTGIPN 543
           N  GD +  +G+  DIT++K++       A  D+   L GI N
Sbjct: 552 NPEGDYMGTLGLITDITKRKRTE-----QALYDSEKRLEGILN 589



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           T  P    ILG +S  +      ++ +IH +DR      L +    +   + +E R R  
Sbjct: 253 TLNPVFERILGYSSRELLAQP--FIEFIHPDDRSTSLAELANLRQGK-ETIHFENRYRCR 309

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           D  + W+     P             +A DITE+KK
Sbjct: 310 DGSYRWLSWTSAPYMEEK----LIYAVARDITEEKK 341



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 2/133 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +             +   +   ++    V        ++G  S  +           
Sbjct: 101 HQELKRVNPHFQNIFNQAKVAIALVNLQGKFVQVNQAFCDLIGYTSQELI--KLQLSKIT 158

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  +R +    L+  +         E R    D    W  + +  M +       +I I 
Sbjct: 159 HPEERLSDSQWLNQLLKNSCEAFSREKRYVKKDGSIIWGQVTVSVMKDQAKKPQYFIVII 218

Query: 517 NDITEQKKSLEGI 529
           N I++++++    
Sbjct: 219 NAISDRQETERHR 231



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/68 (7%), Positives = 17/68 (25%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           + + V + +         +    ER    V    D +   ++  +          +   +
Sbjct: 328 LIYAVARDITEEKKIEIALKDSEERFRQIVTTISDGLIVVNLEGNIRFVNLAAQELFVRS 387

Query: 442 SGSMHGPI 449
              +    
Sbjct: 388 ETELLEHP 395


>gi|89519310|gb|ABD75787.1| sensory box/GGDEF family protein [uncultured bacterium]
          Length = 874

 Score =  600 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 151/583 (25%), Positives = 275/583 (47%), Gaps = 16/583 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T  + +       + +    ER  + +  + D V  +D         P  + + G    
Sbjct: 295 VTSCEDITERKQAEEALRKSEERYRIVLESAPDPVVVYDTEGKVAYFNPAFSRVFGWTLD 354

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G   ++LP     +    + I +     +       + +   D +   + I      
Sbjct: 355 ESIGRNIDFLPV---ENVPENKLIFEKINCGKTLSGIETYCL-TKDGKKVGVNISGAGFF 410

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS----- 558
           +++  +   I    DITE+KK+ E I   A+ D LTG+ NR+SF  RL   L  S     
Sbjct: 411 DNHDKLQGSIITLQDITERKKTEEEIKFLAYHDVLTGLLNRKSFYTRLEDELIRSYSYDG 470

Query: 559 --ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                   +  +  +D+D++K +ND LG  VGD++L  +  R+   L+  D + RL G+ 
Sbjct: 471 DRRRIKGHKWALFFLDVDRFKYVNDTLGHDVGDELLKVVAVRLKNCLRKSDYIFRLGGDE 530

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F IIL    +   +A  A  +RK+IA P  + + E+ +T SIG + +         ++KN
Sbjct: 531 FTIILNDLTDDTDMAKVAQKIRKAIARPCRIKDHELYITVSIGISIYPDDGDDVETLVKN 590

Query: 677 AELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           A++AMY AK    G       ++    +R+M++ +L  A+++ +L + Y P++     +I
Sbjct: 591 ADIAMYAAKEENQGYRFFIEEMNRKTLERMMLENNLRNALQHDQLIIYYQPLVD-STNQI 649

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EAL++W HP+ G IS S+F+ +AEE  +I  I  ++L    +    W +       +
Sbjct: 650 VGMEALLRWHHPELGLISPSQFIPLAEETGLIVPIGKWVLRCACQQARKWHEM-GYTRFY 708

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ +   + +L E ++ ++  T   P  +KL  +ES +M +PE++   +  LR  G
Sbjct: 709 VAVNLSVRQFREPDLVETIEQILEATDLPPDCLKLEVTESGIMEHPEQAIAKMKMLRAKG 768

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913
           I  ++DDFGT  S LSYL   P DT+K + S +    + +    I+++II MA+N+    
Sbjct: 769 IHFSIDDFGTGYSSLSYLKRFPIDTLKIDRSFVIDSTTNKDDQEIIKTIIAMARNLGMDT 828

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +A+ +  +     L   GC  +Q  +   P+       +L+ R
Sbjct: 829 VAEGVEAKEQQDFLIHHGCHMMQGYYFGRPMPAEKFEDMLQTR 871



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           + ++ +   +I+ +L      +       +   AV      +   D+ R  +   P  A 
Sbjct: 165 VELMNMNEHLIEELLEEIDERKRAEKHLRQLKQAVETMQLGITITDLDRKIIYMNPAGAE 224

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + G     + G   +    +    R          +   +G ++    +R  D     + 
Sbjct: 225 MHGYQVEELLGQDVSMF--VPPEHRKPLTL---ERIKEWKGLIRESVNIR-KDGTTFLVW 278

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +    + N+ G+    +    DITE+K++ E
Sbjct: 279 LMSEIVKNAKGEPFAIVTSCEDITERKQAEE 309


>gi|218249132|ref|YP_002374503.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 8801]
 gi|218169610|gb|ACK68347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8801]
          Length = 1143

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 175/579 (30%), Positives = 286/579 (49%), Gaps = 8/579 (1%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
               +I  +       Q ++   +R    +    D++W  D    + +   P I  + G  
Sbjct: 560  TLGLITDITKRKRTEQALYDSEKRLEGILNSLQDVIWSADPKTRQSLYLNPAIQLVYGRP 619

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                      WL  +H  D++     L   +   +G  +  +R+   D +  W+  R R 
Sbjct: 620  MEDFFRDPHLWLCMVHPEDQELVSHHLK--LLEDKGSTEVHYRIIRPDGETRWLHSRSRL 677

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +  G  LR  GI +DITE+K++ E +  NA  D LT +PNR  F+DRL   L+     
Sbjct: 678  VYDEQGKSLRIDGINSDITERKQAEEQLQYNATHDTLTQLPNRLLFMDRLEHALERRRRY 737

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +    V+ +D+D++K IND LG A+GD++L  + RR+ + L+  D LARL G+ F I+L
Sbjct: 738  SDPLFAVLFLDLDEFKVINDSLGHALGDELLREIARRLQKSLRADDTLARLGGDEFTILL 797

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               ++       A  + K +  P NL  +EI    SIG A        +SE+L++A+ AM
Sbjct: 798  EEIHDVKDAIKIAERIHKDLTRPFNLEGQEIFTNTSIGIALSNGEYEAASEILRDADTAM 857

Query: 682  YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G      F          R+ ++ DL  A+E  E  + Y PII L  + + G E
Sbjct: 858  YRAKAGGKACYAIFDQQMHASAVSRLQLETDLRRAIERQEFLVYYQPIISLQHDTLTGFE 917

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILI 798
            ALI+W HP+ G +  + F+ IAEE  +I  I  ++LE+ A+ +  W+ Q      + + +
Sbjct: 918  ALIRWQHPQQGLVPPARFIPIAEETGLIVPIGEWILEQAAQQLKIWQTQYRNYESLKMSV 977

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++SK L D  L   +  ++SKT    + +K+  +ES++M N + +  +L  LR+  I +
Sbjct: 978  NLSSKQLRDASLLGTIDRILSKTEIDNNALKVEITESILMENVQVAADVLIALRERNIEI 1037

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916
             LDDFGT  S LSYL   P +T+K + S +           I+R+I+ +A  +   IIA+
Sbjct: 1038 CLDDFGTGYSSLSYLHRFPVNTLKIDRSFVMRMRPNDENSEIVRAIVSLAHILGMEIIAE 1097

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I  E+ + +L  +GC+  Q    A PL  + +  LLK 
Sbjct: 1098 GIETELQLAQLKWIGCEQGQGYFFAKPLATSEVEALLKN 1136



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++++  +   +Q +    E+    V  + + +W  D           ++ ILG    
Sbjct: 436 LISLRNITDSYQANQKLAESEEKYRKIVETTNEGIWISDHHNKITFVNHQMSEILGYTVD 495

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M G   + L +I                    G   ++ ++R  D    W I+    + 
Sbjct: 496 KMMG--MSLLTFIDAAQLSLVEKSGQKTEQSLPGT--HDLKLRRQDGSELWAIVSTNALF 551

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDN---LTGIPN 543
           N  GD +  +G+  DIT++K++       A  D+   L GI N
Sbjct: 552 NPEGDYMGTLGLITDITKRKRTE-----QALYDSEKRLEGILN 589



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           T  P    ILG +S  +      ++ +IH +DR      L +    +   + +E R R  
Sbjct: 253 TLNPVFERILGYSSRELLAQP--FIEFIHPDDRSTSLAELANLRQGK-ETIHFENRYRCR 309

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           D  + W+     P             +A DITE+KK
Sbjct: 310 DGSYRWLSWTSAPYMEEK----LIYAVARDITEEKK 341



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 2/133 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +             +   +   ++    V        ++G  S  +           
Sbjct: 101 HQELKRVNPHFQNIFNQAKVAIALVNLQGKFVQVNQAFCDLIGYTSQELI--KLQLSKIT 158

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  +R +    L+  +         E R    D    W  + +  M +       +I I 
Sbjct: 159 HPEERLSDSQWLNQLLKNSCEAFSREKRYVKKDGSIIWGQVTVSVMKDQAKKPQYFIVII 218

Query: 517 NDITEQKKSLEGI 529
           N I++++++    
Sbjct: 219 NAISDRQETERHR 231



 Score = 40.7 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/68 (7%), Positives = 17/68 (25%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           + + V + +         +    ER    V    D +   ++  +          +   +
Sbjct: 328 LIYAVARDITEEKKIEIALKDSEERFRQIVTTISDGLIVVNLEGNIRFVNLAAQELFVRS 387

Query: 442 SGSMHGPI 449
              +    
Sbjct: 388 ETELLEHP 395


>gi|209966703|ref|YP_002299618.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960169|gb|ACJ00806.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 979

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 154/604 (25%), Positives = 271/604 (44%), Gaps = 8/604 (1%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
            W  I  R   ++      G   + +        V+Q +       Q +    ER  LAV
Sbjct: 366 TWSEIQGRTGRNVTFSMAFGVSQMRLGDRRTAICVVQDITRRKQAEQALRDSEERLKLAV 425

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +   V+D D        +P+   +LG            +   +H +DR      ++ +
Sbjct: 426 RATRSGVFDVDYANGIFWWSPEFIEMLGYEGSPPGQADLLFREILHPDDRPAALAQIERY 485

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +  + G     +R+R  D    W+  R + + +  G  +R  G   D+T++K+  E ++ 
Sbjct: 486 LAGKSGDYHAFYRLRHRDGSLIWIEARGQAIRDDRGRPVRITGTMTDVTDRKRFEEQLMY 545

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D LTG+PNR    DRL    D +    N    V+++D+D++K +ND LG  VGD +
Sbjct: 546 VSTHDPLTGLPNRTLLQDRLQHAADQAERKGN-SVAVLLLDLDRFKLVNDSLGHQVGDKL 604

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L ++++R+   ++  D + RL  + F II          A  A  +   ++ P  L  ++
Sbjct: 605 LRAISQRLASSVRPADTIGRLGADEFLIIAEDLTEPQMAARVAETVLAGLSQPFGLDGQQ 664

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKE 709
           + +T SIG   +         +L++A+ AM+ AK  GGN    F          R+ ++ 
Sbjct: 665 LFITCSIGITLFPGDATDIGALLRDADTAMHTAKSAGGNGYRFFTPEMNEAAVARLSLEH 724

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++  +  L Y P   L   + VG+EAL++W HP+ G I  S F+ +AEE  MI A
Sbjct: 725 ALREAIDQGQFELHYQPKASLETMQTVGVEALLRWRHPEMGMIPPSTFIPVAEETGMILA 784

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L      I  W       P+ + +N++ + +  +   + +Q+L+ +    P  ++
Sbjct: 785 IGDWVLRAALEQINRWERAGL-EPLPVAVNVSVRQITSSHFADRIQSLLDEYGVRPDLLE 843

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+ +M N       L  LR  GI + +DDFGT  S LSYL  +P  T+K + S ++
Sbjct: 844 LEITETAMMSNMAFIADGLAELRGRGIRIAVDDFGTGYSSLSYLRRLPITTLKVDRSFVS 903

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              S     AI  +II M + +  T++A+ I  +  +  L R  C   Q   +  P+   
Sbjct: 904 EAPSNADTGAIAATIIAMGRQLGLTVVAEGIETQEQLDFLRRHRCHEAQGFLIGFPVPAA 963

Query: 948 SILK 951
            +  
Sbjct: 964 ELEA 967



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 9/152 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + ++        +     R S  +    D +   D      T       + G A+  + G
Sbjct: 273 RSLVERRRAEAALRERETRLSGIMDNVADGIITLDEDLRIETMNRAALELFGHAAADVVG 332

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNS 505
               ++  I   D       L + +       + E    ++    +     +        
Sbjct: 333 KP--FVTLIDEGDWTRVAMALMACLRQSGDGRRRETWSEIQGRTGRNVTFSMAFGVSQMR 390

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            GD    I +  DIT +K++       A +D+
Sbjct: 391 LGDRRTAICVVQDITRRKQAE-----QALRDS 417


>gi|326390990|ref|ZP_08212539.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992935|gb|EGD51378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 769

 Score =  598 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 149/582 (25%), Positives = 283/582 (48%), Gaps = 5/582 (0%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++     + Q+++      + +    ER  L V G+ D +WDWD++ D    +     I
Sbjct: 177 ELMAREEELRQNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDI 236

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G     +      W  +IH  D       L + +  +      E+R++  D ++ W++ 
Sbjct: 237 IGFDKEVISNYRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKTKDGRYIWILS 296

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R + + + +G  +R  G   DITE+K+    +   AF D LTG+P R+ F+DRL   +  
Sbjct: 297 RGKALWDEDGRAIRMAGSHTDITERKQMESKLKYMAFYDPLTGLPRREIFMDRLKIAMAD 356

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  +   +  V  +D+D +K IND LG  +GD +L  + +++   L+  D ++R+ G+ F
Sbjct: 357 AKRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEF 415

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L    N       A  + +    PI     E+ VT SIG A +         ++KNA
Sbjct: 416 VILLPDIINMDDTNKVANRILELFNQPIKFNNHELHVTISIGIAIYPDHGKNERVIVKNA 475

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK  G N  + F   + +   V   I+ DL LA+E  + +L Y P++ +   ++
Sbjct: 476 DIAMYRAKRDGKNGFQYFDSITRKEVEVASTIRRDLRLALEKGQFFLCYQPLVDIRTGKV 535

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             +EAL++W HPK G IS   F+ IAEE   I +I  ++L    R +  W +        
Sbjct: 536 TSMEALLRWQHPKKGLISPIHFIPIAEETRQIISIGEWVLRAACRQMKEWLNM-GYSGFN 594

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++   L   +  + +  ++++    P  ++L  +E++++   E     L RL+++G
Sbjct: 595 VSVNVSVHQLQQPDFAKVVFDILNEIELEPRYLELEITETILIEAMETVVRNLYRLKEVG 654

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTII 914
           + + +DDFGT+ S   YL     D +K + S ++    E   AI+ +II +   ++  + 
Sbjct: 655 VKIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAIIFLGHRMKLGVT 714

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  +  +  L   GCD +Q  + + PL  +  ++++++ 
Sbjct: 715 AEGVETKEQLDCLIESGCDKVQGYYFSKPLPPDEAIRMVQKE 756


>gi|17230662|ref|NP_487210.1| hypothetical protein alr3170 [Nostoc sp. PCC 7120]
 gi|17132265|dbj|BAB74869.1| alr3170 [Nostoc sp. PCC 7120]
          Length = 1021

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 164/586 (27%), Positives = 289/586 (49%), Gaps = 9/586 (1%)

Query: 378  IVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435
            + +L   + +   L     ++  +    ER    +     ++W       + +     + 
Sbjct: 435  LGMLTNISDVYDELRLRKQAEASLQESKERLDGILNSLEAVIWSIAADTFEMLYLNSAVV 494

Query: 436  TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             + G +    +   + W   IH  D+      +   +    G  + E+R+   D Q  W+
Sbjct: 495  QVYGRSVCEFYDNPKLWFDLIHPEDQQRVSQSIKPLLAN--GSHELEYRILRQDGQVRWL 552

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                  + ++ G  +R  G+A DITE+K   E ++ +AF D+LTG+PNR  F+DRL   +
Sbjct: 553  YNHSHVIYDAVGQPIRIEGVATDITERKNMEEKLVYHAFYDDLTGLPNRVLFMDRLAQTI 612

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            D +    N    V+ +D+D++K +ND L   VGD +LVS  +R+   L+  D LARL G+
Sbjct: 613  DQAKESPNDLFAVLFLDLDRFKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGD 672

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F I+L    +       A  + +++ +P NL   E+  T SIG A  T+  + ++++L+
Sbjct: 673  EFTILLSHIQSIDDATRIAEKIHQALKLPFNLSGYEVFTTVSIGIALSTNDYVQAADLLR 732

Query: 676  NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +A+ A+Y AK +G      F   +       + ++ DL  A+   ELY+VY PI+ +   
Sbjct: 733  DADTALYCAKEQGKAWHIVFDSTMYDRAVALLQLETDLRWAIARQELYVVYQPIVSVATG 792

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-P 792
            +I G EAL++W HP+ G IS  EF+ +AEE  +I  I  F+L    + +  W  +     
Sbjct: 793  KITGFEALVRWQHPERGLISPVEFIPVAEETGLIIQIGQFVLRESCQQLKQWHLEFPEFQ 852

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + I +N++ K      L E ++ L+ +    PS IKL  +ES +M +P ++  +L +L+
Sbjct: 853  HLSINVNLSGKQFSQPYLVEEIEQLLQEFDLDPSSIKLEITESAIMASPGQAATILQQLK 912

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
             +GI L +DDFGT  S L+YL   P D +K + S            AI+R+I+ +A N+E
Sbjct: 913  TLGIQLCIDDFGTGYSSLAYLHCFPIDILKIDRSFTKRIDSDSEQLAIIRAIVTLASNLE 972

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +++A+ +     + +L  + CD  Q    + PL  + +  LL  +
Sbjct: 973  MSVVAEGVETVNQLVQLQLLKCDQAQGYLFSKPLSSDKVSLLLAAK 1018



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 4/142 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +     V   +       + +    E+    V  + + +W  +   +       +AT+LG
Sbjct: 306 LTHFIGVQNDITQHLQVLETLQQQKEQYRRIVETASEGIWLLNQNNETTFVNQQMATMLG 365

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                M G   +   ++     D  + +L       + + +++FR    D    W II  
Sbjct: 366 YTIEEMLG--ASLFSFMDAEGLDMAQDLLSQRRQGIQEKHKFKFR--CKDGSDLWAIISC 421

Query: 500 RPMSNSNGDILRYIGIANDITE 521
            P+ +   +    +G+  +I++
Sbjct: 422 TPLFDEQRNYTGALGMLTNISD 443



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 407 QSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
               +    + +   D        +       T+ G ++G + G    +L   +  D+  
Sbjct: 204 MEQVLATISNGIVLTDANQPDNPIIYVNQAFETMTGYSAGEVIGQNCRFLQT-NETDQPG 262

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L S +  ++       +    D    W  + I P+ +S   +  +IG+ NDIT+  
Sbjct: 263 LWE-LRSALREKKEC-HVIIKNFRKDGTEFWNELYIAPVFDSCEQLTHFIGVQNDITQHL 320

Query: 524 KSLEGILCN 532
           + LE +   
Sbjct: 321 QVLETLQQQ 329


>gi|170750583|ref|YP_001756843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657105|gb|ACB26160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 703

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 146/577 (25%), Positives = 278/577 (48%), Gaps = 11/577 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 + A     + +     R +LA     D +WD D+      ++     +LG   G
Sbjct: 118 VRTFTDITARKRAEETLQVSETRLALAQDAGSDGLWDCDLTTGEAWSSDRWWGVLGYEPG 177

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
            +    R W   +H  D       L   +  R      E R+R  D  + WM+ R + + 
Sbjct: 178 ELASHARTWRALLHPEDAGAAERALVEHLSGRAPTYASEHRMRRKDGSWAWMMTRGKVVA 237

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             ++G  LR+IG   DIT +K +   +   A  D LT +PNR  F +RL   L     + 
Sbjct: 238 RAADGRALRFIGTQIDITARKAAEGQVAHMARHDGLTDLPNRALFYERLEIRLADLHLNG 297

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V+ +D+D++K +ND LG A GD +L ++  RI  +L+  D++ARL G+ F +++ 
Sbjct: 298 GA-CAVLCLDLDRFKTVNDSLGHAAGDFLLRAVAHRIRAVLRADDMVARLGGDEFAVLVA 356

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             ++  +    A  +  ++  PI   +R + V  S+G A   S    S  + + A+LA++
Sbjct: 357 DADDPARAETLAARLIAAVQAPIPFGKRRLKVGLSVGIAQAPSHGFDSETLFRRADLALH 416

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    F  +   ++  R  ++ DL  A+E  EL L Y P +      ++G EA
Sbjct: 417 RAKTEGRNTHRVFEPAMDEAEAARRDLERDLRQAIEGDELILYYQPQVSTGTGRLLGFEA 476

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP  G +  + F+ +AEE  +I  +  ++L    R+   W       P+ + +N+
Sbjct: 477 LVRWEHPTRGLVPPNAFIPLAEESGLILPLGEWVLRAACREAARWA-----HPLKVAVNL 531

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +     +L E + A++++T  +P+R++L  +E++++ +  R+  +L RL+  G+S+ +
Sbjct: 532 SPRQFQQADLPERVLAILTETGLAPTRLELEITETLIINDMARALGILRRLKAFGVSIAM 591

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+ L   PFD +K + S +     + +   I+R+++ + +++  +++A+ +
Sbjct: 592 DDFGTGYSSLATLQAFPFDKIKIDRSFVGHVEVSPQAAVIVRAVLGLGRSLGMSVVAEGV 651

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  ++ L    CD  Q   ++ P       + +  
Sbjct: 652 ETDAQMRFLAAEACDEAQGYLISKPQPIERFAEQIDA 688


>gi|220935844|ref|YP_002514743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997154|gb|ACL73756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 862

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 132/571 (23%), Positives = 270/571 (47%), Gaps = 7/571 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +         +    +R + A   +    W+W+I   R+  + ++  +LGL       
Sbjct: 295 REIEERTRVESALRLSEQRLANAQRIARLGHWEWEIATGRLYWSAEVYNLLGLGPEFTTP 354

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               +L  I  +DR   +  +   + +     + + R+   D     +      + +  G
Sbjct: 355 DYERFLEMIPGDDRQRLQEAIARCLEH-GLPYEIDHRITCPDGSERILHEDGELVYDDEG 413

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             L   G A DITE+      +   A  D +TG+PNR  F DRL   L  +  +  L   
Sbjct: 414 KPLLLRGTAQDITERHDYQNRLRHLANFDPVTGLPNRTLFKDRLQHALANATRNQRL-VA 472

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K +ND LG  +GD++L     R+   ++  D +AR  G+ F I+L +  +S
Sbjct: 473 LLFLDMDQFKNVNDSLGHMMGDELLRQTAERLLGCVREGDTVARFGGDEFIILLENIEHS 532

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            + +  A  + +++  P  L E E     SIG + +        +++++A+ AMY AK +
Sbjct: 533 EQASLSAERVVQAMRRPFRLGEHEHFCNVSIGISLYPEDDEHPEDLVRHADSAMYLAKAQ 592

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG     +         +R++++  L  A+E  +  + Y P + L    I G+EAL++W 
Sbjct: 593 GGAGYRFYTPDMNTRAMERLLLQNQLHQALELGQFQVHYQPQMDLRSGRICGVEALVRWQ 652

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +  +EF+ +AE+  +I+ +  ++L   AR++  W+D+   P + + +N++ +  
Sbjct: 653 HPERGLVPPAEFIPMAEDTGLIEPLGEWVLRTAAREVRGWQDRGL-PALNLSVNLSPRQF 711

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L   ++ +++++     R++L  +E +++ + E +   L R+ ++G+ +++DDFGT
Sbjct: 712 RHPDLPGMVERVLAESGLEAERLELEITERLIIVDLEHTVDTLSRIARLGVRVSIDDFGT 771

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P   +K +   + G        AI  ++I + + +   +IA+ +     
Sbjct: 772 GHSSLAYLKRLPVHALKIDREFVDGIGQDSDDAAIAEAVIALGRTLRLQVIAEGVETREQ 831

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              L   GCD +Q   +A P+    +   L 
Sbjct: 832 ASFLREHGCDAVQGFFIARPMPAGELTGWLS 862



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 10/191 (5%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            IG+   +  +  +       +   V  V   G  +   ++                  A
Sbjct: 92  IIGVGRTVHGQRKDG--SLFPMELAVSEVKAGGEHLFAGIVRDISERHQFHQTLALFRRA 149

Query: 411 VLGS--GDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +  +  G  + D D   +R+       A I G+ +  + G     L      D      +
Sbjct: 150 MDSAYNGIAIADVDAEGERISYANAAFAQITGIPAVDLLGRSLTLLA-CEGEDGQTCTAM 208

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +        G ++   R +  D    W  + + P+ N  G+I + I +  D T  K+S +
Sbjct: 209 VSQMRTG--GSMRRTLRCQRPDGSLFWNDVTLSPIFNERGEISQCIAVLADATALKESEQ 266

Query: 528 GILCNAFQDNL 538
            +     +D L
Sbjct: 267 ALRR--SRDAL 275



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +    D V   + +       P +  I G     M G   + L  +   DR+    
Sbjct: 22  LRAVLEEMVDGVVLINRLGIIREVNPAVTRIFGYERKEMLGANVSLL--VPSPDRERHDQ 79

Query: 467 ILDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            L +++    GR+    R    +  D     M + +  +    G    + GI  DI+E+ 
Sbjct: 80  YLRNYLQTGEGRIIGVGRTVHGQRKDGSLFPMELAVSEVK--AGGEHLFAGIVRDISERH 137

Query: 524 KSLE 527
           +  +
Sbjct: 138 QFHQ 141


>gi|78224277|ref|YP_386024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
 gi|78195532|gb|ABB33299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
          Length = 905

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 167/581 (28%), Positives = 282/581 (48%), Gaps = 19/581 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGL 440
            T+I  + A     Q +         A+  S + +   D        +   P    I G 
Sbjct: 315 ITIISDISARKRNEQELVL----LKRAMESSINGITITDATHPDNPIIYVNPAFERITGY 370

Query: 441 ASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
               +      +L     +DRD    + ++ +F   R G      R    D    W  + 
Sbjct: 371 GVDEVIDKNPRFLRG---DDRDQAELKKLVQAFKEEREGCFVL--RNYRKDGSPFWNELF 425

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+ + +G +  YIG+ NDITE ++  E ++  A  D LTG+PNR    DRL   L L 
Sbjct: 426 IAPVRDRDGVVTNYIGVMNDITEHRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALE 485

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A        VM +D+D +KK+ND LG  VGD +L ++  R+   L+  D +ARL G+ + 
Sbjct: 486 AFRRRNPICVMFLDLDNFKKVNDTLGHTVGDMLLKAVANRLKNCLRGGDTVARLGGDEYI 545

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L +      +   A  M    A P+ L+  EI VTASIG A + +   T   +LKNA+
Sbjct: 546 IVLPNVREVPDVITVAKKMINVFAAPLLLMGNEIYVTASIGIALFPTDGETVDALLKNAD 605

Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMYHAK +G N+ + +   ++    +R+ ++  L  AV+N E  L Y P + L +  I 
Sbjct: 606 AAMYHAKEQGKNNYQFYSAEMNIRVFERLSLETSLHRAVKNQEFLLHYQPRVDLRNGRIC 665

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL++W+HP+ G +S ++F+ +AEE  +I  +  ++L        +W+D    PP+ +
Sbjct: 666 GVEALVRWNHPEMGLVSPAKFIPLAEETGLIVPMGEWVLRTACAQNKAWQDAGL-PPLRM 724

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      L   ++ ++ +T  +P  ++L  +ES+VM   E+S  +L  L   GI
Sbjct: 725 AVNLSARQFRQENLIAMVEEILMETGLAPQWLELELTESLVMQEAEKSAAILRELTDRGI 784

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S LSYL   P   +K + + +           ++++II MA  +    I
Sbjct: 785 EVAIDDFGTGYSSLSYLKRFPIANLKIDQAFIRDMTRDPDDATLVKTIITMAHGLGMKTI 844

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +     I  L R  C+ +Q  + + P+    + +LL +
Sbjct: 845 AEGVELAEQIDFLCRHQCEEMQGYYFSRPITAEELGRLLAD 885



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 4/145 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +++ V  +    + +    E+    +  S   +   D              I G ++ 
Sbjct: 190 LGIVRDVTESRETGERLRETNEKLDTLIQASPQGIVAVDCGGKVTLWNRAAVEIFGWSAE 249

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G        +   +R      L   V   +     E R R  D     + +   P+ 
Sbjct: 250 EVLGKPYP----VAPAERAAEHRKLRELVLQGKRITDVELRRRRKDGSPIDVSLSAAPIC 305

Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528
           + +G  L  I I +DI+ +K++ + 
Sbjct: 306 DGSGTPLGVITIISDISARKRNEQE 330



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG----FTVIQHVLATGYF 396
           + A +LI        M +  R  +     A+     L+++++     +  I   L +  F
Sbjct: 21  LLALLLIVFVIELFLMVLLPRTADGGTPLAISLLDALLLVILSAPIIWLSIVRPLRSVAF 80

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +  + +D     L +    D +  +D     ++  P    + G  S    G     +  I
Sbjct: 81  TASLHTD-----LLLDHIADGIISFDGAGRLLSLNPAAEQLFGYQSAEATGRSLGDILAI 135

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               +DN         G    RL  E     +D       + +  +      +  ++GI 
Sbjct: 136 RSTGKDNPLLTPLVCCGEEHSRLTCEAEGIRSDGSRFPAALSLSRVQMKG--VWHFLGIV 193

Query: 517 NDITEQKKSLEGIL 530
            D+TE +++ E + 
Sbjct: 194 RDVTESRETGERLR 207


>gi|307266512|ref|ZP_07548046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918492|gb|EFN48732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 770

 Score =  596 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 148/582 (25%), Positives = 283/582 (48%), Gaps = 5/582 (0%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++     + Q+++      + +    ER  L V G+ D +WDWD++ D    +     I
Sbjct: 178 ELMAREEELRQNLIEIQRQQEELKRSEERYRLVVEGASDGLWDWDLITDTAYISERWKDI 237

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G     +      W  +IH  D       L + +  +      E+R++  D ++ W++ 
Sbjct: 238 IGFDKEVISNYRETWTKFIHPRDVKTVINNLRNHLEKKTPFYLCEYRIKIKDGRYIWILS 297

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R + + + +G  +R  G   DITE+K+    +   AF D LTG+P R+ F+DRL   +  
Sbjct: 298 RGKALWDEDGRAIRMAGSHTDITERKQMESKLKYMAFYDPLTGLPRREIFMDRLKIAMAD 357

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  +   +  V  +D+D +K IND LG  +GD +L  + +++   L+  D ++R+ G+ F
Sbjct: 358 AKRNGK-KLAVFFVDLDNFKTINDSLGHHIGDRLLKKIAKKLKACLRESDTVSRVGGDEF 416

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L    N       A  + +    PI     E+ VT SIG A +         ++KNA
Sbjct: 417 VILLPDIINMDDTNKVANRILELFNQPIKFNNHELHVTISIGIAIYPDHGKNERVIVKNA 476

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK  G N  + F   + +   V   I+ DL LA+E  + +L Y P++ +   ++
Sbjct: 477 DIAMYRAKRDGKNGFQYFDSITRKEVEVASTIRRDLRLALEKGQFFLCYQPLVDIRTGKV 536

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             +EAL++W HPK G I+   F+ IAEE   I +I  ++L    R +  W +        
Sbjct: 537 TSMEALLRWQHPKKGLINPIHFIPIAEETRQIISIGEWVLRAACRQMKEWLNM-GYSGFN 595

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++   L   +  + +  ++++    P  ++L  +E++++   E     L RL+++G
Sbjct: 596 VSVNVSVHQLQQPDFAKVVFDILNEIELEPRYLELEITETILIEAMETVVRNLYRLKEVG 655

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTII 914
           + + +DDFGT+ S   YL     D +K + S ++    E   AI+ +II +   ++  + 
Sbjct: 656 VKIIIDDFGTENSSFKYLQKFTVDGLKIDRSFVSEIKVEVNKAIVDAIIFLGHRMKLGVT 715

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  +  +  L   GCD +Q  + + PL  +  ++++++ 
Sbjct: 716 AEGVETKEQLDCLIESGCDKVQGYYFSKPLPPDEAIRMVQKE 757


>gi|150017320|ref|YP_001309574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149903785|gb|ABR34618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 981

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 172/568 (30%), Positives = 293/568 (51%), Gaps = 7/568 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + +    E+  LA+  + D +W+W++V D    +  +  I G     ++     
Sbjct: 417 ELQQNEEALRVSEEKYKLALECANDSIWEWNLVTDTFFASDKLIDITGYKLDEINNLRNF 476

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +H +D D  +    + +         EFR+R   + + W++   + + NS G +++
Sbjct: 477 VYENVHSDDLDKVKKDFKNHINQLTDVYSSEFRIRTKSSSYVWILSCGKALRNSEGKVIK 536

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             G   DI+E+K S + I   AF D+LT +PNR  F++RL   L LS    N +  V  I
Sbjct: 537 ITGSIRDISERKISEDRIKFMAFYDSLTKLPNRTLFMNRLNEQLQLSN-YANKQGIVFFI 595

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND +G   GD +L+SL ++   L++  D ++RL G+ F I+L  ++   +I 
Sbjct: 596 DLDNFKNINDTMGHEYGDKLLISLAKQFENLIEEKDTISRLGGDEF-ILLHPDSKEDEIQ 654

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            +A  +         +  + + +TAS+G A +      SS +L+NA+ AMY AK  G N 
Sbjct: 655 TYANKLLGLFDKVFKIDNKHMYITASVGIALYPKDGRDSSTILRNADAAMYRAKELGKNR 714

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F    + S      I+  L  AV+N+EL + Y P   L   +I G EAL++ +  + 
Sbjct: 715 FSLFDPEMYLSLERKTSIERILRTAVDNNELIINYQPQYDLQANKIFGFEALLRLNSREL 774

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS +EF+ IAEE   I  + L++L+   R    W +        I +NI+S DL +  
Sbjct: 775 GFISPAEFIPIAEECGYITQLTLWVLKESCRQSAKWFEAGYKFN-SISVNISSVDLQETN 833

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + ++ +I  +  +P+ I+L  +E+V+M + + S  +L +L  +GI + LDDFGT  S 
Sbjct: 834 FLDNVKEIIESSSVNPNMIELEITETVLMKSFDSSIGILKKLMDMGIRIALDDFGTGYSS 893

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL  IP +T+K + S +   +  +   AI+++II MA ++E  +IA+ +  E  +  L
Sbjct: 894 LSYLRRIPINTLKIDKSFIDNISSNKKEEAIIKNIIQMAHSMELKVIAEGVETEGQLLIL 953

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            RM CDYIQ  + + PL  N + +LL++
Sbjct: 954 ERMKCDYIQGYYFSKPLLANQLEELLEK 981


>gi|75910072|ref|YP_324368.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Anabaena variabilis ATCC 29413]
 gi|75703797|gb|ABA23473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Anabaena variabilis ATCC 29413]
          Length = 1021

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 161/586 (27%), Positives = 290/586 (49%), Gaps = 9/586 (1%)

Query: 378  IVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435
            + +L   + +   L     ++  +    ER    +     ++W       + +     + 
Sbjct: 435  LGMLTNISDVYDELRLRKQAEASLQESKERLDGILNSLEVVIWSIAADTFEMLYLNSAVV 494

Query: 436  TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             + G +    +   + W   IH  D+      +   +    G  + E+R+   D Q  W+
Sbjct: 495  QVYGRSVCEFYDNSKLWFELIHPEDQQRVSQSIKPLLAN--GSHELEYRILRQDGQVRWL 552

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                  + ++ G  +R  G+A DITE+K   E ++ +AF D+LTG+PNR  F+DRL   +
Sbjct: 553  YNHSHVIYDAVGQPIRIEGVATDITERKNMEERLVYHAFYDDLTGLPNRVLFMDRLAQTI 612

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            + +    N    V+ +D+D++K +ND L   VGD +LVS  +R+   L+  D LARL G+
Sbjct: 613  NQAKESPNDLFAVLFLDLDRFKVVNDSLSHLVGDQLLVSFAQRLQSCLQPEDTLARLGGD 672

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F I+L    +       A  + +++ +P NL   E+  T SIG A  ++  + ++++L+
Sbjct: 673  EFTILLSHIQSIDDATRIAEKIHQALKLPFNLSGYEVFTTVSIGIALSSNDYVQAADLLR 732

Query: 676  NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +A+ A+Y AK +G      F   +       + ++ DL  A+   ELY+VY PI+ +   
Sbjct: 733  DADTALYCAKEQGKAWHIVFDSTMYDRAVALLQLETDLRWAIARQELYVVYQPIVSVATG 792

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-P 792
            +I G EAL++W+HP+ G IS  EF+ +AEE  +I  I  F+L    + +  W  +     
Sbjct: 793  KITGFEALVRWEHPERGLISPVEFIPVAEETGLIIQIGQFVLRESCQQLKQWHLEFPEFQ 852

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + I +N++ K      L E ++ L+ +     + IKL  +ES +M +PE++  +L +L+
Sbjct: 853  HLSINVNLSGKQFSQPYLVEEIEQLLQEFELDANSIKLEITESAIMASPEQAATILQQLK 912

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
             +GI L +DDFGT  S L+YL   P D +K + S            AI+R+I+ +A N+E
Sbjct: 913  TLGIQLCIDDFGTGYSSLAYLHCFPIDILKIDRSFTKRIDSDSEQLAIIRAIVTLASNLE 972

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +++A+ +     + +L  + CD  Q    + PL  + +  LL  +
Sbjct: 973  MSVVAEGVETVNQLVQLQLLKCDQAQGYLFSKPLSSDKVSLLLAAK 1018



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +    E+    V  + + +W  +   +       +A++LG     M G   +   
Sbjct: 321 QALETLQEQKEQYRRIVETASEGIWLLNENNETTFVNQQMASMLGYTIEEMLG--ASLFS 378

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           ++     D  + +L       + +  ++FR    D    W I+   P  +  G+    +G
Sbjct: 379 FMDAEGLDIAQDLLLGRQQDIQEKHNFKFR--CKDGSDLWAILSCTPFLDEQGNYTGALG 436

Query: 515 IANDITE 521
           +  +I++
Sbjct: 437 MLTNISD 443



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 6/129 (4%)

Query: 407 QSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
              A+    + +   D        +        + G ++G + G    +L     +    
Sbjct: 204 MEQALAAISNGIVLTDANQPDNPIIYVNQAFEAMTGYSAGEVIGQNCRFLQANETD--QL 261

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             + L S +  ++       +    D    W  + I P+ +S G +  +IG+ NDIT   
Sbjct: 262 SLSELRSALQEKKEC-HVVIKNFRKDGTEFWNELYIAPVFDSCGQLTHFIGVQNDITHHL 320

Query: 524 KSLEGILCN 532
           ++LE +   
Sbjct: 321 QALETLQEQ 329


>gi|320162150|ref|YP_004175375.1| putative signaling protein [Anaerolinea thermophila UNI-1]
 gi|319996004|dbj|BAJ64775.1| putative signaling protein [Anaerolinea thermophila UNI-1]
          Length = 820

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 168/562 (29%), Positives = 296/562 (52%), Gaps = 5/562 (0%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    ER  LA L + D +WDW+I   RV  +P    ILG   G +   + +W   I  
Sbjct: 251 ALRESQERFMLATLAANDGIWDWNIKSGRVYYSPRWKEILGFTEGEIGHRMEDWYARILP 310

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D D+F++ L+S +     RL+ E R+   D    W+++R   M N  G+  R  G  +D
Sbjct: 311 EDLDSFQSALNSLLSGATSRLECEIRMVLKDGGTVWVLVRGLAMRNREGEAYRIAGSMSD 370

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+K+++E +   A  D LTG+PNR   LDRL   ++ S         V+ +D+D++K 
Sbjct: 371 ITERKQAIEQLTRAALYDTLTGLPNRTLLLDRLGMAIERSRRAGGTFGAVLFLDLDQFKV 430

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD++L+ +  R+ + L+  D LAR  G+ F I+L S ++   +   A  ++
Sbjct: 431 VNDSLGHPAGDEMLIQVGHRLQKCLRASDTLARFGGDEFVILLESVSSRRDVLQVADRVQ 490

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            +++ P  +  R++  T S+G         T  E+L++A++AMY AK  G      F   
Sbjct: 491 HALSEPFEIAGRKVFTTVSMGIVIGLKQYNTREEVLQDADIAMYRAKSSGKARYVIFDAT 550

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     +R+ ++ DL  A+E + LYLVY PI+ L    ++G EAL +W HP+ G I  ++
Sbjct: 551 MRKRAINRLSLEMDLRHAIEQNHLYLVYQPILELQSGALIGFEALARWQHPEHGLILPAD 610

Query: 757 FMLIAEELCMIKAINLFMLERIARDII-SWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           F+ IAEE  +I+ +  ++L    R     +    ++ P+ I IN++S+ + ++   E ++
Sbjct: 611 FIPIAEETSLIREVGRWVLREACRQFAPIFYQTKHIRPLVISINVSSRQITESGFVEYIR 670

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +      P+ +KL  +ES ++ + + +R +  +LR++G+ + +DDFGT  S LSY+  
Sbjct: 671 ETLEGYRLPPTCLKLEITESALIESVDIARHVFHQLRQMGVDIHVDDFGTGYSSLSYIHR 730

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + +    E   +  I RSI+ MA+++    +A+ I  +     L +M C+
Sbjct: 731 LPVDVIKIDQAFVQKLGEDEQSLEITRSILHMARSLGIKTVAEGIESQQQYLFLQQMACE 790

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y Q   ++ P+    +   LK 
Sbjct: 791 YGQGYFLSQPMTIAQVEDFLKS 812



 Score = 74.2 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            + L    ++ L+  +I   L G  +    +     I+ +L+          +     L 
Sbjct: 77  LVLLEKPHSEILEGILIAQGLRGIEIPTTTVQLVAQIETLLSRHEILNQQRQNEAYFRLL 136

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  S ++++  D        +P +   LG     +    RN+L ++H  D    +  L  
Sbjct: 137 LENSLEVIFVLDADYRIRFASPSLRLTLGYPPDQVFQ--RNFLEWLHPEDAPQAKDTLQW 194

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQK------ 523
            V +         R++  D  +H         + +    I   I  + DITEQ+      
Sbjct: 195 AVEHPESIQALRVRLQHLDGSWHIFEVFSKSRLQDE--QIKGIILNSRDITEQQLVYNAL 252

Query: 524 KSLEGILCNAF 534
           +  +     A 
Sbjct: 253 RESQERFMLAT 263


>gi|296129272|ref|YP_003636522.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cellulomonas flavigena DSM 20109]
 gi|296021087|gb|ADG74323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cellulomonas flavigena DSM 20109]
          Length = 1126

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 156/585 (26%), Positives = 283/585 (48%), Gaps = 5/585 (0%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++   L      + +    ER +LA   + D +WDWD+    V  +     +LG    
Sbjct: 539  AVLLAVALDQDRAVEALRVSEERYALAAEAANDGMWDWDLETGAVYYSARWKALLGYRDH 598

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             + G    WL  +H  DR      L   +  R   ++ E+R+R AD  + WMI     + 
Sbjct: 599  EIEGTSHEWLSRVHPADRGAVDRALAHHLDGRDPAMEVEYRLRTADGSYRWMITSALSVR 658

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +++G   R +G   D+TE+K+  + +  +A  D LTG+PNR  FL+RL   +  +    +
Sbjct: 659  DADGTATRLVGSMTDVTERKQLEDQLRHDAHYDLLTGLPNRALFLERLNQSILRTRRHPD 718

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             R  V+ +D+D +K +ND LG  VGD++L+ +  R+   ++  D ++R  G+ F +++  
Sbjct: 719  YRFAVIFLDLDGFKVVNDSLGHQVGDELLIEVAARLSSEVRATDTVSRFGGDEFALLVDD 778

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +   + D    +   +++P+ L +R  TV+A+ G A   S   T+ E L++A+ AMY 
Sbjct: 779  VKDVAGLPDVVRRLLSVVSVPVVLEDRTRTVSAAAGIAVSASGYDTADEYLRDADTAMYR 838

Query: 684  AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G   V  F   + +    R+ ++  L   +   E  L Y PI+R+   +IVG+EAL
Sbjct: 839  AKAEGPGAVVLFDTAMHARAMARLQMESALDQGIAEDEFELFYQPIVRMDTRQIVGMEAL 898

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINI 800
            I+W HP+ G ++ ++F+ +AE     + I  + +    R I  W D         + +N+
Sbjct: 899  IRWRHPQRGLVAPNDFLPVAEATGHTRPIGQWTIGEACRQIREWLDVVPGFEACTVSVNL 958

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +++   D +L   +++ + +     S I    +E V+M N + +   L +LR+ G+ L +
Sbjct: 959  SNRQFWDPDLRPTLRSALDRYAVPTSSIVFEVTEGVIMDNQDVAVSFLHQLREEGVELHV 1018

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S LS L  +P   +K + S +     + +   ++  ++ M       +IA+ I
Sbjct: 1019 DDFGTGHSSLSSLHELPVGALKIDRSFVQRMQTSPRSHELVGLMVTMGTRFGLDVIAEGI 1078

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              E +   L+R+GC Y Q    + PL       LL  +  +  ++
Sbjct: 1079 ETEEEAAALSRLGCPYAQGYLFSRPLPATEATALLLAQTAVTASS 1123


>gi|291613934|ref|YP_003524091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584046|gb|ADE11704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 995

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 159/569 (27%), Positives = 272/569 (47%), Gaps = 11/569 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +     R S A+ G GD VWDW++  + V+ +     + G A   +   +  W  
Sbjct: 426 QAEEALRESEARWSFALEGGGDCVWDWNVSNNEVSLSKGGKGMFGFADDEIGNDMSEWNA 485

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYI 513
            +H  D     + +  F   +  R   E+RVR  D+ + W++ R      +++G + R I
Sbjct: 486 RVHPEDISRLLSRISDFFHSKADRFSAEYRVRCKDDSWKWILTRGMVAHRSTDGRVTRMI 545

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G   D++E+K + E I   A  D+LT +PNR+ F DRL   + L+  D +    +M+ID+
Sbjct: 546 GTHTDLSERKLAEETIRRQANYDSLTQLPNRRLFRDRLEQTIRLAKRDQS-SFALMLIDL 604

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K++ND +G   GD +LV   +RI   ++  D +AR+ G+ F +IL   N+   I   
Sbjct: 605 DHFKEVNDTMGHDAGDFLLVDAAQRIQHCVRESDTVARMGGDEFVVILPDVNDPDNIERI 664

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   +A P  L E +  ++ASIG   + S   +   +LKNA+ AMY AKH G N + 
Sbjct: 665 AQNIITKLAAPFVLGEEKAFISASIGITLYPSDADSMETLLKNADQAMYVAKHLGRNRMS 724

Query: 694 SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F          R+ +  DL  A+ +++L + Y PI+ L   +I   EALI+W HP  G 
Sbjct: 725 YFTPVLQENAQKRMRLVNDLRDALSSNQLRVFYQPIVELATGDIHKAEALIRWLHPTRGM 784

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-- 809
           +S SEF+ +AEE  MI  I  ++L +    +   +   +     I +N +     ++   
Sbjct: 785 VSPSEFIPLAEETGMIIEIGDWVLRQAMHQVKRLQAS-HHKGFQISVNKSPVQFHNDNPL 843

Query: 810 -LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              E +   + +     S + +  +E V++ +    +  L   R  GI + +DDFGT  S
Sbjct: 844 KAAEWLGE-LEQNGLLASSLVVEITEGVLLDDDGNVKDRLLASRDAGIQVAIDDFGTGYS 902

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL     D +K + + +         +A+  +II MA  +   +IA+ +  E     
Sbjct: 903 SLAYLKKFDIDYLKIDQTFVNNLGNQSDDMALCEAIIVMAHKLGLKVIAEGVETEQQRDL 962

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L + GCDY Q    +  +    +  LL++
Sbjct: 963 LKQAGCDYAQGFLFSKAIPAEELEDLLRQ 991



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/359 (9%), Positives = 99/359 (27%), Gaps = 9/359 (2%)

Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232
           + +W        + S  +   +       L       +   R  + +     A  +   +
Sbjct: 76  LVIWRSVPLSFFIASSNVLEALTAVWLLSLIKTFDSGFKQPRDYLWL---IFAGSIAAML 132

Query: 233 SIDFGFLSKLVNLPSGELLIWR-ACSEIALSSSLIIFLFMYLHWNRWHA-KVGYITFSGI 290
           +   G ++ +         I+      +  +   I     +L   R    +      S  
Sbjct: 133 AATIGVVTLVFANVLPIADIFHAWGYWVMGNLLGIALGTPFLLIWRKQPSRWINKEQSRW 192

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV-LLIPAWILIFI 349
             +++   ++F   +V       +    +       ++            +    +L  +
Sbjct: 193 LELSLFAVLAFLTSLVAFHGWTSSSFEDIPLGYLMYLFVTWAAIRLGRHGVTLVLLLTAV 252

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVI-LIGFTVIQHVLATGYFSQGIFSDGERQS 408
             +   +        DI        L +I + L+G  +   +         +     R  
Sbjct: 253 QGVLGALDGVGFFAGDIHSGLANFWLYMISLSLVGVVLESTIRQHRRDGDALRESESRLH 312

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +  +   +W                   G+   +      +    +            
Sbjct: 313 AILDHAPVGIWLVGKDGRYQFVNKRFCDATGIPESAFLATT-HLPDLMGEQIAAACLASD 371

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            + +      +  E  +   D + H + +    + +SNG+++  IGI+ D+T + ++ E
Sbjct: 372 QACLSQDEPYVSVET-LPLVDGKLHQLEVTKAQLRDSNGEVIGAIGISVDVTGRNQAEE 429


>gi|309792653|ref|ZP_07687106.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
 gi|308225281|gb|EFO79056.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
          Length = 717

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 162/617 (26%), Positives = 300/617 (48%), Gaps = 9/617 (1%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSD 403
            +  I +          + +       + L    +     +            +  +   
Sbjct: 92  VVTCIQMGAEDYLFKPFNPLLLQTKVSVSLAKKRLQDQERRQRAELERQIAERAVELERS 151

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA  G+ D +WDWD+  + +  +    ++LG     +    + W+  IH +D++ 
Sbjct: 152 EERYALAARGANDGLWDWDVPNNHLFLSTRWKSMLGYRDEDIGNNPQEWMHLIHPDDQEL 211

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F+  L +         ++E+R+R  D  + W++ R   + + N  +LR  G   DI+ ++
Sbjct: 212 FKVRLAAHFRRLLDSFEHEYRIRNYDGSYRWVLCRGLAVWDENDQVLRIAGSQTDISLRR 271

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + +  +A  D LTG+PNR  FLDRL   + +S      R  V+ ID+D++K IND L
Sbjct: 272 AAEQQLQHDALHDLLTGLPNRGLFLDRLERAITISRRHPERRFAVLFIDLDRFKTINDSL 331

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+++ +RI   L+  D +AR+ G+ F I++    +   I      +  SIA 
Sbjct: 332 GHTAGDQLLIAVAQRILGCLRPSDTVARIGGDEFTILIEDIADFQMIQAIVERIHASIAE 391

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           PI L       TASIG  +      +++EM+++A+ AMYHAK  G      F   + +  
Sbjct: 392 PIQLGGHRTISTASIGVTTSDLQYTSATEMIRDADTAMYHAKMGGKARHVIFTPAMHAQA 451

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ ++ DL  A+   EL L Y PI+ L    ++G EALI+W HP+ G +    F+ IA
Sbjct: 452 MEKLQMESDLRGALGAGELRLHYQPIMSLEHGTVIGFEALIRWQHPQRGLLYPGAFLDIA 511

Query: 762 EELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISK 820
           EE  +I  I+ ++L     +  +W+ +    PP+ + +N++++   +  + + +  ++++
Sbjct: 512 EETGLIVPISWWVLRTSCLEASNWQREFPGDPPLSVNVNLSARLFAEPSIVDQIADVLAE 571

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   PS +KL   E  +M    ++  +L R+R++G+ L +DDFGT  S LSYL   P  T
Sbjct: 572 SGIPPSSLKLELIEHSLMTLSNQTSDVLRRIREMGVQLCIDDFGTGYSSLSYLHSFPVST 631

Query: 881 VKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       ++  I+++II +A+ +   ++A+ I  E   ++L  + C   Q  
Sbjct: 632 LKIDRSFINRMGPLGEQGEIVQTIIGLARTLNLDVVAEGIETEQQYQQLRDLQCGLGQGL 691

Query: 939 HVASPLGFNSILKLLKE 955
             A  L    +  LL  
Sbjct: 692 LFAPGLDSEGVRALLSN 708


>gi|22299402|ref|NP_682649.1| hypothetical protein tll1859 [Thermosynechococcus elongatus BP-1]
 gi|22295585|dbj|BAC09411.1| tll1859 [Thermosynechococcus elongatus BP-1]
          Length = 712

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 162/600 (27%), Positives = 289/600 (48%), Gaps = 10/600 (1%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            ++   I           ++     T ++   A       +    +R +L      D +W
Sbjct: 115 GQVLEMIWAFVRFPNGEGLICGYNITDMKLTQA------ALLETSDRYALLTRSINDGIW 168

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           DW++  +    +    +ILG     +   I +WL  IH  D D  +  L   +  +    
Sbjct: 169 DWNLTTNETFYSSRWKSILGYQDDEIGNHIDDWLKRIHPQDGDRVKLNLMLHIRGQTPHF 228

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             EFR++  +  + W++ R   + + +G+  R  G   D+TE +     +L +   D LT
Sbjct: 229 HQEFRIQHRNGAYRWVLARGLVLRDVHGNATRVAGSLTDLTEHRLGEAQLLHDGLHDWLT 288

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR    DR+           + +  ++ IDID++K IND LG + GD +L+ L  R+
Sbjct: 289 GLANRTLLFDRIEQAARHGRRRPDYKLAILFIDIDRFKVINDSLGHSSGDLILIELANRL 348

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +++  D +AR+ G+ F I+L   +++         +   +  P  + ++ I +  SIG
Sbjct: 349 TRIVRADDTVARIGGDEFVILLDDISDNNDALAVCDRIHSELDKPFVVNDQPIALRVSIG 408

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVEN 717
            A  ++    +   L+NA++AMY AK  GGN  + F         DR+ ++  L  A+E 
Sbjct: 409 VALRSAHIEKAENYLRNADIAMYRAKLAGGNRYQVFSEDMHLMARDRLSLEIGLRQAIER 468

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L+Y PI RL D  + G EALI+W HP  G +    F+ +AEE  +I  I  +++ R
Sbjct: 469 DEFTLLYQPIYRLRDNALYGFEALIRWQHPTQGFLLPDRFIPLAEETGLILPIGDWVIWR 528

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             RD+  W +Q     + + +N++++ L+   L E + A + +T   P  + L  +ESV 
Sbjct: 529 ACRDLQYWHEQFPQCQLSVNVNLSNRQLMHPALPEQVLAALEQTQIPPHCLHLEMTESVG 588

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           +  P++ R  L +L+  GI L+LDDFGT  S L YL ++P D +K + S +     TE+R
Sbjct: 589 IDQPDQVRETLCKLKAQGIKLSLDDFGTGYSSLRYLTHLPIDILKVDRSFVKLITETEQR 648

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ +I+ +AK +   ++A+ +     +  L  +GCDY+Q  + + PL    +  LL +
Sbjct: 649 PLVIDAIVSLAKGLALEVVAEGVEHPYQVTRLRELGCDYVQGYYFSRPLTTEQVSALLAQ 708


>gi|158319674|ref|YP_001512181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkaliphilus oremlandii OhILAs]
 gi|158139873|gb|ABW18185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkaliphilus oremlandii OhILAs]
          Length = 703

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 140/576 (24%), Positives = 278/576 (48%), Gaps = 8/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++Q     G     +    +R SL V G+ D +WDWD++ +    +     + G A   +
Sbjct: 127 MLQQYDEIGKHRDALMVSNQRYSLVVEGANDGLWDWDLINETYFFSLKHKGVFGYAPEEL 186

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 W    H  D       + +++   + G  +  +R+R  + ++ W++ R + +  
Sbjct: 187 ENTFEAWKSLFHPEDLKEALEKVAAYLENPKEGIYENIYRIRCKNGEYRWILSRGKAVW- 245

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G  +R  G   DITEQ+     +   A+ D LTG+ N++   + +  +L  +   +  
Sbjct: 246 EDGKAIRIAGSHTDITEQQNLQNKLHTMAYYDTLTGLYNKEMLKEEMEKLLREA-ETEKK 304

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++ +DID +K IND+LG  +GD ++  +   +   +K P+++ARL G+ F ++L   
Sbjct: 305 KMALIYLDIDNFKHINDILGHEIGDKMITYIANILSHQVKAPNLVARLGGDEFAVVLGEI 364

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +          +  P NL ++E  ++ SIG A +     T + +++NA+ AM+H 
Sbjct: 365 KTIEDVLQEIEKFSSYLRRPWNLNKQEFFISTSIGVALYPDHGKTLATLMQNADTAMFHI 424

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G + V  +   ++    D + +   L   + N E  + Y P I L   E++G EALI
Sbjct: 425 KENGRDGVGIYAPYMTEKTLDYIQMSSQLRYGIHNEEFTVYYQPQIDLKTNEVIGTEALI 484

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HPK G I  ++F+  AE    I  I  ++ + +    + W+ +       + +N++S
Sbjct: 485 RWLHPKKGFIPPNDFIPFAETTGYITEIEKWVFKTVVEQKVKWQKEGYD-NFKVSVNLSS 543

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K L   +L   ++ ++ +   S   I++  +E+ ++ N E++  +L +L+++ I++ LDD
Sbjct: 544 KMLTHPQLLAYIKKILDEYNISGDYIEMEVTETAIIDNLEKATDVLKQLKELNITIALDD 603

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K +   +    +      IL+ +I +A ++   ++A+ +  
Sbjct: 604 FGTGYSSLTYLQKLPIDILKIDRDFIKNIQDINDEAHILKLVIDLAHSLGLKVVAEGVET 663

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           E  +  L +  CD +Q  + + PL    I   L+ R
Sbjct: 664 EAQLDYLRKNHCDIVQGYYFSKPLPEADIKTFLENR 699


>gi|170742049|ref|YP_001770704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168196323|gb|ACA18270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 990

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 163/594 (27%), Positives = 277/594 (46%), Gaps = 13/594 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           ++ I I  T  +        S+  +    ER +LA+    D +WD D+       +    
Sbjct: 381 VVGISIDVTDRKRAEQARQASEAALRVSEERLALALESGSDGLWDCDLTTGTSWVSDQWL 440

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           T+LG   G +      WL  +H +DR+     +   +  R    + E R+R  D  + W+
Sbjct: 441 TMLGYRKGELDAGYETWLRLLHPDDREAVLARVRDHLEGRTPSYECEQRMRRKDGGWAWI 500

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + R + +    +G   R +G   DIT +K++   +   A  D LT +PNR  F +RL   
Sbjct: 501 LERGKVVSRAPDGTARRVVGTHIDITARKEAEARVTHMARHDTLTDLPNRALFRERLEQR 560

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L            ++ +D+D +K +ND LG   GD +L  + RR   +L+  D +ARL G
Sbjct: 561 LAEIRRHGG-HCVLLALDLDAFKAVNDSLGHLAGDALLREIARRFRSVLRAEDTVARLGG 619

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I+L        + DFA  +  S+  P+ L  +++ V  SIG A        +  + 
Sbjct: 620 DEFAILLGGTPRLESVMDFAERLVASVREPVTLEGQQVGVGVSIGIAIGPEHGEDADTLF 679

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+ A+Y AK  G N    F   +     +R  ++ DL LA+   E  L Y P++ +  
Sbjct: 680 RHADRALYRAKSDGRNTFRFFEPAMDRAAEERRRLELDLQLALRRGEFVLHYQPVLDVAS 739

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IV +EAL++W+HP  G +    F+ +AEE  +I A+  ++L    RD     +     
Sbjct: 740 RAIVAVEALVRWNHPTRGQLGPGVFIPLAEETGLIVALGEWVLRTATRDARHLPEH---- 795

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +NI++  +    L + ++A +     SP R++L  +ESV+MG+    R  L  LR
Sbjct: 796 -VRVAVNISAVQVRHASLGQTVRAALDAAALSPDRLELEITESVLMGDSSLVRDALSGLR 854

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911
           ++G  L LDDFGT  S LSYL   PFD +K + S +     +  + ILR+I+ +   +  
Sbjct: 855 ELGTHLALDDFGTGYSSLSYLRQYPFDRLKVDRSFIASIPDQGTVTILRAIVGLGTGLGM 914

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF--PLVKNT 963
           T+ A+ +        +   GC  +Q      P     +L  L+ R   P +++T
Sbjct: 915 TVTAEGVETPAQFAFVEAEGCAQVQGYLTGKPQPLPDLLATLEGRNDQPPLQDT 968



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 2/148 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +       + +    +R  LA   +G  ++DW ++      +P+   +  L   
Sbjct: 253 LGTALDIEEIVAGREALRVTTDRLRLAQEAAGAGLFDWSLIDGSALLSPETLRLFNLPED 312

Query: 444 SM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                    W   +H +D           V      L+ EFR+   D    W++   R M
Sbjct: 313 RATRVTQAEWAAAMHPDDLPVLAAETRRAVAT-GTTLRVEFRIPLPDGSDRWIMGTGRVM 371

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530
           ++ +G  +R +GI+ D+T++K++ +   
Sbjct: 372 ADGDGRAVRVVGISIDVTDRKRAEQARQ 399



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 9/156 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLAS 442
                 +       Q + +   R      G   +VW       + +      A   G   
Sbjct: 129 VRTYTDITDRKRAEQQVAASEARYRALADGLPQMVWVMRASDGELLYRNARFAHYYG--- 185

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +       +   H +D                   + E R+R  D    W  +   P+
Sbjct: 186 -EIGTARGERVERSHPDDAARVAAEWARCRAE-GCPFEIEVRLRRHDGVHRWHKLVKIPV 243

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            ++ G+ + ++G A DI E     E +      D L
Sbjct: 244 RHA-GETVEFLGTALDIEEIVAGREALRV--TTDRL 276



 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 37/138 (26%), Gaps = 16/138 (11%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +      +   D           +  +L L    M           +   RD FR    
Sbjct: 29  VLETMDQGLMMIDAEGVVRVCNGRVIEMLDLPPEMMRAQPSFDQVRQYQLGRDEFRRSPK 88

Query: 470 SFV----GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            F             + +     + +   + IR  P+          +    DIT++K++
Sbjct: 89  EFRQWVADTGLRPRHHVYERERPNGRI--LEIRTVPLPGG-----GAVRTYTDITDRKRA 141

Query: 526 LEGI-----LCNAFQDNL 538
            + +        A  D L
Sbjct: 142 EQQVAASEARYRALADGL 159


>gi|256005420|ref|ZP_05430384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum DSM 2360]
 gi|281417124|ref|ZP_06248144.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum JW20]
 gi|255990646|gb|EEU00764.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum DSM 2360]
 gi|281408526|gb|EFB38784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum JW20]
 gi|316940835|gb|ADU74869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum DSM 1313]
          Length = 862

 Score =  589 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 154/569 (27%), Positives = 272/569 (47%), Gaps = 9/569 (1%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               + +    E   + +   G+ V   D       +  +I  +LGL+   + G   + L
Sbjct: 286 SKAYRELRKQHEWLRITLSSIGEAVITTDENGTVTFSNYEIQKMLGLSEEEILGKKLDKL 345

Query: 454 PYIHINDRDNFRTI-LDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               ++ R+    I ++  V      +L+ +  +     +   +   + P+ N +  I+ 
Sbjct: 346 LSGLVDKREKVYKIPIEEVVNRGSMIKLETDLSLVTPGGR-RLVEGTVAPIRNDSDVIIG 404

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +    DITE KK  E +    + D LTG+PNR  F DRL   L  S  + N    ++++
Sbjct: 405 TVVALKDITEIKKKDEILYNMEYYDPLTGLPNRSLFSDRLKMALAQSKRN-NEMCALIIL 463

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND LG +VGD +L  +  +I   L+  D +AR+ G+ F II     +     
Sbjct: 464 DLDNFKAINDTLGHSVGDMLLKQVAEKIKGYLREVDTVARIGGDEFIIIQPQIKDINDAT 523

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + K    P  L  +E  +TAS+G   + +       + KNA+ A+Y AK  G N+
Sbjct: 524 RAADRILKKFQQPWILEGKEYYITASMGIGIYPNDGEDPQTIFKNADTALYRAKELGRNN 583

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + +  S  +     +  +  L  A+E  E  L Y P I +   +IVG EAL++W HP +
Sbjct: 584 YQLYTESMNQKVLQRLDIENSLRRAIEKEEFVLFYQPQIDIKTGKIVGFEALLRWYHPDY 643

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ +AE+  +I  I  ++LE   R    W +    P + I +N++++    + 
Sbjct: 644 GLMPPMEFIPVAEDSGLIVVIGEWVLETACRQNKKWIECGLEPHL-ISVNLSARQFQRSN 702

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           + E +  + S T  +P  ++L  +ES  M +   +  +L +LRK GI ++LDDFGT  S 
Sbjct: 703 IVEVIDRIRSSTGLAPELLELEITESTAMQDLSFTIDVLNQLRKKGIRVSLDDFGTGYSS 762

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P DT+K + S +       K  AI +++I +A  ++ T++A+ +  +  +  L
Sbjct: 763 LNYLRQLPIDTLKIDKSFVQDIRANSKEEAIAKTVISLAHKLDLTVVAEGVETKEQLLFL 822

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  CD  Q    + PL    I K+L+++
Sbjct: 823 KKEKCDKAQGYLFSKPLPAEEIEKMLRDK 851


>gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075689|gb|ADJ65088.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains
           protein [Herbaspirillum seropedicae SmR1]
          Length = 701

 Score =  589 bits (1518), Expect = e-165,   Method: Composition-based stats.
 Identities = 148/576 (25%), Positives = 268/576 (46%), Gaps = 11/576 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           +Q V      +Q +     R       + + V+        +   P +A I G  +   +
Sbjct: 121 LQDVTERKEAAQALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPEDL 180

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +R+    +++      R      +  +     +E RV   D +  W+    R + + 
Sbjct: 181 IVGLRDISHQLYVE--PERRQEFMRLMEEQGSVSNFESRVYRRDGEIIWISENARAVYDE 238

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G +  Y G    ITE+K     +   A  D LTG+PNR    + L   L ++       
Sbjct: 239 AGKLSCYEGTVEAITERKAHEAEMRHQATHDALTGLPNRNMLHEHLQRALRVA-RQKGAL 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  +D+D++K IND LG  VGD++L ++ +R+   L+  D++AR  G+ F ++L ++ 
Sbjct: 298 TAVAFVDLDQFKFINDSLGHQVGDELLKTVAQRLQACLREADMVARQGGDEFVLVLQNQT 357

Query: 626 NSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                IA+    +  ++A P    +RE  VTASIG + + +       +LK+A+ AMY A
Sbjct: 358 EGEAGIAEVMQRILAAVARPWQAGDREFQVTASIGVSRYPADGKDVESLLKHADSAMYRA 417

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N+ + F           ++    L  A++  E  L Y P + L D  ++G EALI
Sbjct: 418 KEQGRNNFQFFAPWMDSQVSNRLEMLINLRRALDQDEFKLYYQPKLSLQDGRLIGAEALI 477

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+ P+ G +    F+  AEE  +I  I  ++L    R   +W+     PPI + +N++ 
Sbjct: 478 RWESPQQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACRQNQAWQQAGL-PPIPVAVNLSP 536

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L    L + +  +++++  + S ++L  +E+VVM + E+S   L  L+++G+ +++DD
Sbjct: 537 RQLNQ-SLPDFVAGVLAQSGLAASWLELEITENVVMKDAEKSVATLHALKRLGLQISVDD 595

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S +          AI+++II +A  +   +IA+ +  
Sbjct: 596 FGTGYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHILNLRVIAEGVED 655

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           E     L    CD +Q  +   P+        + E+
Sbjct: 656 EEQHAFLKENACDEVQGYYFGKPMEVAVFTAWMSEQ 691



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 429 TTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             +     + G     +      ++L   H  DR   R  +D+ +  RR R+  E+R+  
Sbjct: 34  FVSEGCLALTGYLPEDLLLNQRLSFLELTHPEDRTLVRNHVDACMRERR-RIDIEYRIVR 92

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           AD    W+  R   + N+NG +    G   D+TE+K++ +
Sbjct: 93  ADGAVRWVWERGVGIYNANGQVEAIEGFLQDVTERKEAAQ 132


>gi|302037835|ref|YP_003798157.1| sensory response regulator with diguanylate cyclase domain
           [Candidatus Nitrospira defluvii]
 gi|300605899|emb|CBK42232.1| Sensory response regulator with diguanylate cyclase domain
           [Candidatus Nitrospira defluvii]
          Length = 708

 Score =  588 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 163/620 (26%), Positives = 293/620 (47%), Gaps = 19/620 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            +   +     +       A       +   I    ++++L T      +     R  LA
Sbjct: 83  LVLTGLDDANSIARAYQHGATDFITKPVNATILCHHVRYMLRTNNVLHALIRSESRLELA 142

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +    WDW+   +R++ + ++  +LG+      G    +L  IH +DR      L+ 
Sbjct: 143 QRIARIGNWDWNPKTNRLSMSNELCRLLGVRPQDFGGTFEAFLNLIHPDDRPVVTGALER 202

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            V         + RV   +     + ++   +     D L  IG A DITE+K++   I 
Sbjct: 203 LVSQHTPC-DIDHRVVLPNGTDFIIHLQAEGVREEETDELTVIGTAQDITERKQAERAIH 261

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A+ D+LTG+ NR  F DRL+  L  +          + ID+D++K IND LG  VGD 
Sbjct: 262 QLAYYDSLTGLANRVLFKDRLSNALSYAERYHQ-HLATLFIDLDRFKIINDTLGHTVGDR 320

Query: 591 VLVSLTRRIGELLKFPDIL------------ARLSGNRFGIILISENNSLKIADFAIAMR 638
           +L  +  R+ E ++  D +            ARL G+ F I+L +          A  + 
Sbjct: 321 LLTHVAERLSESVRQSDSVGRHADHEPTHALARLGGDEFTILLTALPTPEDAGRVARRIL 380

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           +++A P ++   EI ++ASIG + + S   T   +LKNA+ AMYHAK +G N+ + +   
Sbjct: 381 EALAHPFSIDGHEIFISASIGISIFPSDGATVEALLKNADTAMYHAKEQGRNNCQFYSSG 440

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            ++  ++R+ ++ +L  A+E  E  + Y P + +   +I+G EAL++W HPK G +    
Sbjct: 441 LNAAAAERLDLENELRRALEREEFVVFYQPKLNIHSRKILGAEALVRWKHPKRGLVPPGV 500

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A +  +I+ ++ ++L    R + +W + A + PI +  N+++       L   +  
Sbjct: 501 FLNAAIDTGLIRPMDEWVLREACRQVKAW-ETAGLAPITVSANVSNSLFHGRTLPATVAD 559

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  +  +PS+++L  +ES+ M + E S  +L  LR +G+ L++DDFGT  S LSYL   
Sbjct: 560 ALRDSGLNPSQLELELTESIAMRDVEASVTMLEGLRTMGVRLSIDDFGTGYSSLSYLQRF 619

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E  + I R+II MA ++  +++A+ +  E  +  L   GCD 
Sbjct: 620 PLSRLKIDQSFVRDLLTNENNVKITRAIIAMAHSLNLSVLAEGVETEGQLARLREEGCDE 679

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q    + P+       LL+
Sbjct: 680 VQGYLFSRPVCAEEFETLLR 699


>gi|125972929|ref|YP_001036839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium thermocellum ATCC 27405]
 gi|125713154|gb|ABN51646.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Clostridium thermocellum ATCC 27405]
          Length = 862

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 154/569 (27%), Positives = 272/569 (47%), Gaps = 9/569 (1%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               + +    E   + +   G+ V   D       +  +I  +LGL+   + G   + L
Sbjct: 286 SKAYRELRKQHEWLRITLSSIGEAVITTDENGTVTFSNYEIQKMLGLSEEEILGKKLDKL 345

Query: 454 PYIHINDRDNFRTI-LDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               ++ R+    I ++  V      +L+ +  +     +   +   + P+ N +  I+ 
Sbjct: 346 LSGLVDKREKVYKIPIEEVVNRGSMIKLETDLSLVTPGGR-RLVEGTVAPIRNDSDVIIG 404

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +    DITE KK  E +    + D LTG+PNR  F DRL   L  S  + N    ++++
Sbjct: 405 TVVALKDITEIKKKDEILYNMEYYDPLTGLPNRSLFSDRLKMALAQSKRN-NEMCALIIL 463

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND LG +VGD +L  +  +I   L+  D +AR+ G+ F II     +     
Sbjct: 464 DLDNFKAINDTLGHSVGDMLLKQVAEKIKGYLREVDTVARIGGDEFIIIQPQIKDINDAT 523

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + K    P  L  +E  +TAS+G   + +       + KNA+ A+Y AK  G N+
Sbjct: 524 RAADRILKKFQQPWILEGKEYYITASMGIGIYPNGGEDPQTIFKNADTALYRAKELGRNN 583

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + +  S  +     +  +  L  A+E  E  L Y P I +   +IVG EAL++W HP +
Sbjct: 584 YQLYTESMNQKVLQRLDIENSLRRAIEKEEFVLFYQPQIDIKTGKIVGFEALLRWYHPDY 643

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ +AE+  +I  I  ++LE   R    W +    P + I +N++++    + 
Sbjct: 644 GLMPPMEFIPVAEDSGLIVVIGEWVLETACRQNKKWIECGLEPHL-ISVNLSARQFQRSN 702

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           + E +  + S T  +P  ++L  +ES  M +   +  +L +LRK GI ++LDDFGT  S 
Sbjct: 703 IVEVIDRIRSSTGLAPELLELEITESTAMQDLSFTIDVLNQLRKKGIRVSLDDFGTGYSS 762

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P DT+K + S +       K  AI +++I +A  ++ T++A+ +  +  +  L
Sbjct: 763 LNYLRQLPIDTLKIDKSFVQDIRANSKEEAIAKTVISLAHKLDLTVVAEGVETKEQLLFL 822

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  CD  Q    + PL    I K+L+++
Sbjct: 823 KKEKCDKAQGYLFSKPLPAEEIEKMLRDK 851


>gi|253999306|ref|YP_003051369.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985985|gb|ACT50842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 910

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 164/597 (27%), Positives = 271/597 (45%), Gaps = 10/597 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFT--VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           + +I  A +   VL+ +L        Q +       + +    +R   A+ GSGD VWDW
Sbjct: 314 SSLIAGAGLAVSVLLYLLSRLFAYRTQTLKTMRDMHKDLILSEQRWKFALEGSGDGVWDW 373

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           DI ++ V  +    T+LG+    M   +  W   IH  D     + L+ ++     +   
Sbjct: 374 DIEKNEVIRSSRWKTMLGMEDWEMGPELEAWKERIHPEDVSRVLSDLEKYMNGETTQYIN 433

Query: 482 EFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           E R+   D  + W++ R   +   ++G  LR +G   DIT+ K+S   +   A  D LT 
Sbjct: 434 EHRLLCKDGSWKWILARGMVVDWAADGRPLRMVGTHTDITKLKESESLVWKQANFDQLTE 493

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+ F DRL   +  S          + +D+D +K++ND LG   GD +L    RRI 
Sbjct: 494 LPNRRMFYDRLAQEIKKSNRLGLPLAL-LFLDLDHFKEVNDTLGHDKGDQLLQEAARRIN 552

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             ++  D +ARL G+ F +IL    +   I   A A+   ++    L E    V+AS+G 
Sbjct: 553 HCVRDTDTVARLGGDEFIVILSELEDLNSIDRIAQAILCKLSASFKLGEDIAFVSASMGI 612

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718
             + +   +   +LKN + AMY AK  G N +  F  S       +++I  DL LA++  
Sbjct: 613 TLYPTDANSIDNLLKNVDQAMYSAKASGRNRISYFTPSMQQAAHQKMLITNDLRLALQEQ 672

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +L + Y PII L    I   EAL++W HP+ G +S +EF+ IAE+  +I  I  ++ E+ 
Sbjct: 673 QLQVHYQPIIHLASGTIQKAEALLRWHHPQRGMVSPAEFIPIAEDTGLIMEIGDWVFEQA 732

Query: 779 ARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
              +  W+ Q       I +N +      D+   +     + +       + +  +E ++
Sbjct: 733 MVQVKKWQQQRGAH-FQISVNKSPVQFKNDSSTHDQWLDYMKQLGLVGQSLVVEITEGLL 791

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKR 895
           +   +     L   R  GI + LDDFGT  S L+YL     D +K + S +   +     
Sbjct: 792 LDTSQNVSKKLLAFRDAGIQVALDDFGTGYSSLAYLRRFDIDYIKIDQSFVRNISTQPDD 851

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +A+  SII MA  +  ++IA+ I  E     L   GCDY Q    +  +  +    L
Sbjct: 852 LALCESIIAMAHKLGLSVIAEGIETEEQCALLKAAGCDYGQGYWFSPAVPADKFETL 908


>gi|302344379|ref|YP_003808908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
 gi|301640992|gb|ADK86314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 972

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 146/562 (25%), Positives = 260/562 (46%), Gaps = 10/562 (1%)

Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + +    ++ +  V   S + +   D              I G  S  + G   + L  
Sbjct: 413 QRKLAEQEQKMAATVFENSIEGIVVADADGKVRLVNSAFTAITGYGSDDVIGKEMDVL-R 471

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               D   +  I      +  G+   E+  R  + + +   + +  + +S+G ++ Y+ I
Sbjct: 472 AEAMDLALYEEIWGQLAEH--GQWSGEYWNRRKNGEAYPEWLTVTVIRDSHGRVINYLAI 529

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE K+S E I   A+ D LTG+PNR  F DRL   L  +    + +  V+ +D+D 
Sbjct: 530 FYDITEIKRSQEQIRYQAYHDALTGLPNRNLFKDRLGQALHHAERRGS-KVAVLFVDLDN 588

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG  VGD VL  +  R+   ++  D +AR+ G+ F ++L   +  L     A 
Sbjct: 589 FKLINDSLGHDVGDHVLRDIAGRLRRCVRDEDTVARIGGDEFLMVLEEIDGELGADRVAR 648

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  + A P  +   E  + ASIG   +         ++KNA++AMY AK RG N+ + F
Sbjct: 649 RVLDNFARPFGVGGHEFHLGASIGVTVFPDDGQDVETLIKNADMAMYRAKERGKNNYQMF 708

Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +      + ++ +  L  A+E  E  + Y   +  +   +VG+EAL +W  P  G + 
Sbjct: 709 TPAMQAKTNLRMEMERALRQALERDEFVVHYQAKVETVSGRVVGMEALARWQSPGKGLVM 768

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AEE  +I AI   +L +  R    W+       + + +N+++K L   E  E 
Sbjct: 769 PGQFIPVAEESGLITAIGKVILRQACRQASRWQTMTGR-DLRLAVNVSAKQLYQPEFVET 827

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T  +P  ++L  +ESVVM     +   L  L  +G+SL +DDFGT  S L YL
Sbjct: 828 VETILRETGLAPGLLELEVTESVVMHQDTAANRTLLELAALGVSLAIDDFGTGYSSLYYL 887

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P DT+K +   +          AI+ +I+ +  ++  +++A+ +     +  L  +G
Sbjct: 888 KHFPIDTLKIDRGFVRDIGRDANDAAIVGAIVSLGHSLGLSVVAEGVETAEQLAYLRALG 947

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           CD  Q  + + P       +LL
Sbjct: 948 CDLCQGYYFSEPAPAEQFAELL 969


>gi|307155030|ref|YP_003890414.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306985258|gb|ADN17139.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7822]
          Length = 1188

 Score =  585 bits (1509), Expect = e-164,   Method: Composition-based stats.
 Identities = 170/599 (28%), Positives = 293/599 (48%), Gaps = 9/599 (1%)

Query: 366  IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            I+    VG ++          ++ +       + +    +R    +    D+VW      
Sbjct: 590  IVAEMRVGLIIWEQQKAHLISLRDITERKQIEKALSESEQRLESILNSIEDVVWSTSATT 649

Query: 426  -DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
             + +   P    + G +   +      W   +H +D+        +      G  +YE+R
Sbjct: 650  LNLIYLNPATERVYGCSIEQLLAEGNLWFNLVHPDDQALIDAHFKAL--EDTGHSEYEYR 707

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            +   D    W+  R R + +  G  +R+ GI +DITE+K   E +  NA+ D LT +PNR
Sbjct: 708  IVRPDGTVRWLYSRSRTIYDPTGKPIRFEGIDSDITERKSFTEQLQYNAYHDPLTSLPNR 767

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               L++L   L  +   +N+   V+ +D+D +K +ND LG  VGD +L+++ +R+   L 
Sbjct: 768  IFLLEKLEEALKKNQNRENIFFAVLFLDLDDFKVVNDSLGHIVGDQLLIAIAQRLKTSLS 827

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             P  LAR  G+ F I+L    ++ +    A  +   +  P +L  +++ ++ SIG A   
Sbjct: 828  VPHTLARFGGDEFTILLEEIQSTDEPLKAAQKIHNDLTQPYDLNGQQVFISTSIGIALSD 887

Query: 665  SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYL 722
             S I   E+L++A+ AMY AK  G      F          R+ ++ +L  A+E  E  L
Sbjct: 888  PSYIHPQEILRDADTAMYQAKRWGKGGYAVFDQQMHLRAVKRLHLEIELRQAIELKEFLL 947

Query: 723  VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
             Y PI+ L    + G EALI+W HPK G IS  EF+ IAEE  +I  +  ++ ++  R +
Sbjct: 948  YYQPIVSLSTGYLTGFEALIRWQHPKKGLISPVEFIPIAEETGLIVPMGKWITQQACRQL 1007

Query: 783  ISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W++Q N+  P+ I +N++SK L ++ L E +  ++++T   PS +KL  +ES++M N 
Sbjct: 1008 KLWQEQYNLKNPLQISVNLSSKQLRNSHLIEEIDEILAQTGIDPSSLKLEITESMLMENV 1067

Query: 842  ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAIL 899
            + +  +L  LRK  I L LDDFGT  S LSYL   P  TVK + S +           I+
Sbjct: 1068 DIAMNILIELRKRNIELCLDDFGTGYSSLSYLHRFPVTTVKIDRSFVMQMQPGNSNAEIV 1127

Query: 900  RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             +II +A ++E T+ A+ +  ++ +++L  + C+  Q    + PL       L++  FP
Sbjct: 1128 HAIITLAHSLEMTVTAEGVETQLQLQQLQWLECEQAQGYFFSKPLPPKEAGTLIQA-FP 1185



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 2/143 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +       + +    E+  L    S   +         V      + ++G    
Sbjct: 375 LCISEDITERKRAEEALKKSEEQFRLVFQHSPIGIAIATPEGKLVRVNEAFSQMMGFTEA 434

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +           + +D  N   +    +       + E R      Q  + ++ +  + 
Sbjct: 435 ELLKRTCG--DLTYPDDLKNEIPLHQKLLAGEIAYYRLEKRYLTKKGQVLYGMLHVGLIR 492

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
           +     L  +G   DI+E+ ++ 
Sbjct: 493 DEQDKPLNLVGQVVDISEKTQAE 515



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P   T LG ++  +      ++  IH ++R+   T ++     +     +E R R  +
Sbjct: 168 LNPAWETTLGYSTEELISQP--FIELIHPDEREAALTEIERLGRGQL-TYHFENRYRTRE 224

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             + W+ +   P             +A+DIT++K++   I  
Sbjct: 225 GTYRWLTLTAVPYVEEG----LIYAVAHDITKRKQTEAEIQQ 262



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +    +R S  +    D +   +   +     P    + G +   +         
Sbjct: 513 QAEIALRESEDRLSRIITTISDGLIVVNNQGNIKFINPAGEKLFGRSQEELLEQHFGV-- 570

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                           FV  +      E  +R A+ Q     +R+  +         ++ 
Sbjct: 571 ---------------PFVDGKTT----EIFIRHANQQLIVAEMRVGLIIWEQQKA--HLI 609

Query: 515 IANDITEQKK 524
              DITE+K+
Sbjct: 610 SLRDITERKQ 619



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 44/182 (24%), Gaps = 22/182 (12%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
               R              V   ++  + V   +         I          +     
Sbjct: 219 RYRTREGTYRWLTLTAVPYVEEGLI--YAVAHDITKRKQTEAEIQQTRNFLQTMIDHLPL 276

Query: 417 IVWDWDIV----RDRVTTTPDIATILGLASGSMHGPI------RNWLPYIHINDRDNFRT 466
            V+  D         +        I G+++    G         +   + +  DR+ F  
Sbjct: 277 AVFVKDGKPETFSQIILWNKTCEKIFGISATEAIGSTTFEHFSDSQAEFFYQKDRETFAR 336

Query: 467 ILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +                R+               P+ +        + I+ DITE+K++
Sbjct: 337 RMPLEIPEEEADSYSLGKRLLH---------TVKIPLYDEQDQPQYLLCISEDITERKRA 387

Query: 526 LE 527
            E
Sbjct: 388 EE 389


>gi|307592283|ref|YP_003899874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Cyanothece sp. PCC 7822]
 gi|306985928|gb|ADN17808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Cyanothece sp. PCC 7822]
          Length = 1152

 Score =  584 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 140/604 (23%), Positives = 289/604 (47%), Gaps = 15/604 (2%)

Query: 356  MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
            +  T  +    +   L G L  +V+ +     Q        +  +    ER  LA+  + 
Sbjct: 552  LKYTGIIAAT-VGILLTGVLTNVVVTLTHRRTQLEQQIQLRTAELKKMAERLRLALEAAN 610

Query: 416  DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
              ++D+D++ ++ T +P+ A IL            + +   H +DR+    + ++++  +
Sbjct: 611  QGIFDFDLLTNQATVSPEYALILDYNPEKFQETFSSLIERTHEDDREKIMAMYEAYLNGK 670

Query: 476  RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              +   EFR + A   + W++   + +  ++    +R +G   DIT  K+S   I   A+
Sbjct: 671  ISQHNLEFRQKTATGNWKWIMSVGKIVQWDAQHQPIRLLGTHTDITGHKQSEAKIKHLAY 730

Query: 535  QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
             D LT + NR+ FL+ L + L ++         ++ ID+D++K +ND  G   GD +L+ 
Sbjct: 731  YDPLTSLANRRLFLEHLESALSVA-RSKGEYGAILFIDLDQFKTLNDARGHDAGDHLLIE 789

Query: 595  LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMRKSIAMPINLLE 649
            + +R+ + ++  D +ARL G+ F ++L   ++    A       A  +R+ ++ P     
Sbjct: 790  VAKRLKQSVRKSDTVARLGGDEFVVLLPQLHHEPTTAAHLSREVAEKVRQKLSTPFVFQH 849

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
             E  ++ASIG   +  +  T S++LK A+ AMY  K +G N V  F  +       R  +
Sbjct: 850  EEFIISASIGITIFPKANETVSDLLKEADTAMYQVKEKGRNGVCFFDTTMLVQVESRFTL 909

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +++L  A+E  E  L   P + + +E IVG E L++W HP  G +    F+ +AE+  +I
Sbjct: 910  EKELRRALERQEFRLYLQPQVDI-NERIVGAEVLLRWQHPSLGLVPPCAFIPLAEDTGLI 968

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +I  ++L++    +  ++ +   P   + +NI+ + L   E    ++ +I+ T    + 
Sbjct: 969  ISIGEWVLQQACFFLADFQAK--NPDFHLSVNISPRQLSQAEFVSNLKQIINITAVQANS 1026

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            + L  +E +++ + +    ++ +L+ +GI+L+LDDFGT  S L+YL  +P + +K + + 
Sbjct: 1027 LTLEITERLIIQDVDYVSSVMSKLQDLGINLSLDDFGTGYSSLAYLKRLPLNEIKIDKNF 1086

Query: 888  MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +           ++ +I+ +A++   T++A+ +        L + GC + Q      P  
Sbjct: 1087 VQDIGNYSNHAPLIEAILAVARHFNLTVVAEGVETIEQANFLKKRGCHFYQGYLYGKPQP 1146

Query: 946  FNSI 949
              + 
Sbjct: 1147 LETF 1150


>gi|313201397|ref|YP_004040055.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440713|gb|ADQ84819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 879

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 164/597 (27%), Positives = 272/597 (45%), Gaps = 10/597 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFT--VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           + +I  A +   VL+ +L        Q +       + +    +R   A+ GSGD VWDW
Sbjct: 283 SSLIAGAGLAVSVLLYLLSRLFAYRTQTLKTMRDMHKDLILSEQRWKFALEGSGDGVWDW 342

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           DI ++ V  +    T+LG+    M   +  W   IH  D     + L+ ++     +   
Sbjct: 343 DIEKNEVIRSSRWKTMLGMEDWEMGPELEAWKERIHPEDVSRVLSDLEKYMNGETTQYIN 402

Query: 482 EFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           E R+   D  + W++ R   +   ++G  LR +G   DIT+ K+S   +   A  D LT 
Sbjct: 403 EHRLLCKDGSWKWILARGMVVDWAADGRPLRMVGTHTDITKLKESESLVWKQANFDQLTE 462

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+ F DRL   +  S          + +D+D +K++ND LG   GD +L    RRI 
Sbjct: 463 LPNRRMFYDRLAQEIKKSNRIGLPLAL-LFLDLDHFKEVNDTLGHDKGDQLLQEAARRIN 521

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             ++  D +ARL G+ F +IL    +   I   A A+   ++    L E    V+AS+G 
Sbjct: 522 HCVRDTDTVARLGGDEFIVILSELEDLNSIDRIAQAILCKLSASFKLGEDIAFVSASMGI 581

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718
             + +   +   +LKN + AMY AK  G N +  F  S       +++I  DL LA++  
Sbjct: 582 TLYPTDANSIDNLLKNVDQAMYSAKASGRNRISYFTPSMQQAAHQKMLITNDLRLALQEQ 641

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +L + Y PII L    I   EAL++W HP+ G +S +EF+ IAE+  +I  I  ++ E+ 
Sbjct: 642 QLQVHYQPIIHLASGTIQKAEALLRWHHPQRGMVSPAEFIPIAEDTGLIMEIGDWVFEQA 701

Query: 779 ARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
              +  W+ Q       I +N +      D+   +     + +       + +  +E ++
Sbjct: 702 MVQVKKWQQQRGAH-FQISVNKSPVQFKNDSSTHDQWLDYMKQLGLVGQSLVVEITEGLL 760

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKR 895
           +   +     L   R  GI + LDDFGT  S L+YL     D +K + S +   +     
Sbjct: 761 LDTSQNVSKKLLAFRDAGIQVALDDFGTGYSSLAYLRRFDIDYIKIDQSFVRNISTQPDD 820

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +A+  SII MA  +  ++IA+ I  E     L   GCDY Q    +  +  ++   L
Sbjct: 821 LALCESIIAMAHKLGLSVIAEGIETEEQCALLKAAGCDYGQGYWFSPAVPADTFETL 877


>gi|226310687|ref|YP_002770581.1| signaling protein [Brevibacillus brevis NBRC 100599]
 gi|226093635|dbj|BAH42077.1| probable signaling protein [Brevibacillus brevis NBRC 100599]
          Length = 708

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 146/578 (25%), Positives = 286/578 (49%), Gaps = 11/578 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++   + A       +    E+  +    + DI+   ++  + +  +P    +      
Sbjct: 137 LSIRSDITARKQMEDELKRSEEKYRIIAENTSDIISIINLDGEFLYLSPSHKRV--WEHT 194

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                I N   +I  +DRD F   +      R+     E R+    N   W   +I P+ 
Sbjct: 195 VPDEEIHNLFEWIVEDDRDIFAYAIQHAFSTRKE-YMVECRINTQRNDVIWTESKINPIM 253

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G++ + + I  D+T++K+S E I   A+ D LT +PNR+ ++ +L+  +  +    +
Sbjct: 254 DEEGNVTKLLLITRDVTDRKQSEETIHHLAYHDALTDLPNRRMYVQQLSKEMMQAKRFQS 313

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D++K +ND  G  VGD +L+  ++R+   LK  D++ARL G+ F I+   
Sbjct: 314 -SLAVLFLDLDRFKDVNDSFGHDVGDMLLIEASKRLQACLKPGDVVARLGGDEFTIMQNQ 372

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  +  + A  +   +  P  L      V+ SIG A +        ++LK A+ A+Y 
Sbjct: 373 LLDRNEATELAEQIMYQLQRPFELDGHVFNVSCSIGIALYPQDGDNPEDLLKRADTALYT 432

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K RG N  + F  S      +R++++ ++  A+E  +  + Y P I +    + G+EAL
Sbjct: 433 VKSRGKNGYDFFDPSMEAKSLERILMENEMRKAIEQEQFQIYYQPKIDIATSAMTGMEAL 492

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G I  + F+ IAEE  MI A+  ++L++  +   +W DQ     + + +N++
Sbjct: 493 VRWVHPELGIIPPNRFIPIAEETGMILALGEWILKQACKQNKNWHDQGYT--LKVSVNLS 550

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ +   +L E ++ ++ +T  SP  ++L  +ES+ +   E +  +L ++R IGI +++D
Sbjct: 551 ARQIYQKDLVEMIKDILQETKLSPHWLELEITESIFVK-MEEATAVLQQIRDIGIQISID 609

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S  SY+  +P DT+K + S +          AI+++I+ +A+++   +IA+ I 
Sbjct: 610 DFGTGYSSFSYIKSLPVDTIKIDASFIRDIHHNQESQAIVKAIVTIAQSLNMNVIAEGIE 669

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               +  L   GCD+ Q    + PL  +   +LL++  
Sbjct: 670 LHDQVAALKENGCDHGQGYLFSKPLPTDDFDQLLRQEL 707



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRT 466
             A+  S  I+   D     +        I       + G     L    H   +  F+ 
Sbjct: 36  KYALDQS-TILAITDHKGIILRANEQFCRISKYERSELIGNDHRILNSGYHP--KSFFKE 92

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +       +    + E R  A D  ++W+   I P  N  G+I +Y+ I +DIT +K+  
Sbjct: 93  MWSCIRSGQ--VWRGEIRNCAKDGSYYWVDTTIVPFKNQAGEIYQYLSIRSDITARKQME 150

Query: 527 EG 528
           + 
Sbjct: 151 DE 152


>gi|222054122|ref|YP_002536484.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221563411|gb|ACM19383.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 709

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 281/580 (48%), Gaps = 15/580 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDG---ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            VI+  L      Q +        R S AV  S   +   D   +     P    + G +
Sbjct: 122 AVIKECLECSRLEQQLREQEVFIRRLSRAVEQSPVSIMITDTSGNIEYVNPRFTKLTGYS 181

Query: 442 SGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                G   + L      +D  ++R + +       G    EF  R  D  ++W++  I 
Sbjct: 182 LQEAAGNKPSMLKSGQSPDD--DYRRLWEIISSG--GEWWGEFHNRKKDGTYYWVLTSIS 237

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ + +  I  +I    DITE+K++ + I   A+ D LTG+PNRQ F + +   L  +  
Sbjct: 238 PIIDGDNHITHFIAFQEDITERKQAEDTIKQMAYYDALTGLPNRQLFNELMHLALAQAQR 297

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGI 619
              L   ++ +D+D++K IND LG  VGD++L +   R+ E  +   D +AR  G+ F I
Sbjct: 298 HGRL-LAILFLDLDRFKVINDTLGHGVGDELLKAAALRLRECCRRDIDTVARRGGDEFII 356

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L   ++  +    A  +  S      L + E+ V+  IG + +      +  ++KNA++
Sbjct: 357 LLPDLDSVQEAVRVAQKIIVSFNRLFTLPDIELFVSTCIGISIYPDDGKDAETLIKNADM 416

Query: 680 AMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK +G N    +   +      R+ ++ DL  A++N E  L Y P I +    IV 
Sbjct: 417 AMYRAKEQGRNRYHLYTSSMDEQALQRLTMENDLRRALQNGEFLLYYQPKINITSGRIVC 476

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W HP+ G +S ++F+ +AE++ +I  +  ++L    R   SW++    PP+ + 
Sbjct: 477 FEALVRWQHPEIGLVSPNQFIPLAEDIGLIVPLGQWVLRAACRQNKSWQEMN-YPPMRVA 535

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N + K  L   +   ++ ++++    P  +++  +E+V++ N +++   L RL  +GI 
Sbjct: 536 VNFSPKQFLQPMMVNMVEQVLAEEDMDPRWLEMEVTENVMLQNVDKTIDTLNRLNNLGIH 595

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIA 915
           +++DDFGT  S LSY+  +P  T+K + S ++     +   AI  ++I MA+++   +IA
Sbjct: 596 ISIDDFGTGYSSLSYIKKLPIQTLKIDQSFVSDIDTNKDDAAIATAVINMARSLRLNVIA 655

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +     +K L+ + C  +Q    + P+    +  LLK 
Sbjct: 656 EGVETVEQLKMLSDLDCQEMQGYLFSKPVSAEEVTHLLKS 695


>gi|269928610|ref|YP_003320931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787967|gb|ACZ40109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
          Length = 760

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 167/700 (23%), Positives = 306/700 (43%), Gaps = 25/700 (3%)

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
                  +  +  + +A  AI   ++ +     +   R  L  + + +T   I++     
Sbjct: 50  LLLPSRPLHVLGVALVATAAIGIGIAVWLLPWGSWSRRAPLTLVPVAFTLIAIHNYFARD 109

Query: 335 ERAVL-----LIPAWILI---------FIWFIGLWMAITKRLDNDIIQPALVGGLVLI-V 379
           E A       +   WI +         F+  + +       +    I  AL   +    V
Sbjct: 110 EPARFGLFFIVTFTWIGLACPRWTSLPFVPLMIVAYVTPLVVTGTSIATALSAAVCTAPV 169

Query: 380 ILIGFTVIQHVLAT-GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++    I  V A      + +     R    V  + D+V            +P I  +L
Sbjct: 170 CVLVAEAIAWVGARLRVAQRSLRESEVRFRSLVQHASDVVAVLGPDGTARYVSPAIQHVL 229

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     + G   +    IH +D  + R  L   V  R      +FR R AD  + ++   
Sbjct: 230 GYRPEDLIGT--SVFDRIHPDDLPHARAQLTEIVLGRGAMPPTQFRYRRADGSWVYVEAT 287

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              + + N  +   +  A DI+E+K+  + ++  A+ D LTG+PNR     RL   L  +
Sbjct: 288 ATNLLD-NPAVGGIVINARDISERKRFEKELVHQAYHDPLTGLPNRVFLQRRLADSLAQA 346

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A  +  R  ++ ID+D +K IND LG   GD VL  L +R+   ++  D+ AR  G+ F 
Sbjct: 347 AR-ERTRVALLFIDLDNFKLINDSLGHDAGDRVLSELGKRLLGCIRCGDMAARFGGDEFM 405

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++     +      A  +  ++A P  +   E+ +T SIG A          ++++NA+
Sbjct: 406 VLINGTPGTDAALAAADRLAATLAEPFVVDGHELVITTSIGVALGGDPDDRPEDLIRNAD 465

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM+ AK  G      F  +      +R+ ++ DL   +E  E  + Y P++ +     V
Sbjct: 466 AAMHRAKLLGKARRVVFDPAMYAQAVERLALERDLRHGLERGEFQIYYQPVLDVRTRRPV 525

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIF 795
            +EAL++W HP+ G IS  EF+ IAEE  +I  +  ++L    R + +WR       P  
Sbjct: 526 EVEALVRWHHPERGLISPGEFIPIAEETGLIVPLGHWVLAEACRQLAAWRTAFPDCAPSA 585

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++++      L   +  ++++T   P+ +KL  +ESV+M +   +   L  L+++G
Sbjct: 586 VSVNLSARQFRHPSLTADIAQILAETGLPPASLKLEITESVMMDDTASTLEALRDLKQLG 645

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S LSYL   P D +K + S   G  +  +  A++ ++I  A  +   +
Sbjct: 646 VQLAVDDFGTGYSSLSYLKRFPTDAMKIDRSFARGLDQSREDQALVEAMIAAANALRLQV 705

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             + +  E  ++ L R+GCD +Q    A P+  + + + L
Sbjct: 706 TVEGVETEEQLEFLERVGCDLVQGFLFAPPMPPDEVARFL 745


>gi|108805572|ref|YP_645509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Rubrobacter xylanophilus DSM 9941]
 gi|108766815|gb|ABG05697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Rubrobacter xylanophilus DSM 9941]
          Length = 1101

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 163/580 (28%), Positives = 280/580 (48%), Gaps = 10/580 (1%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILG 439
            +  T ++ V       + +    E+    V     +V+    D     V ++P    I G
Sbjct: 505  VRITAMRDVTERKRAERELREAQEQYRRLVEQLPAVVYIDRLDETSSNVYSSPQTEKIFG 564

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +          +   +H  DR++      +    R   L+ E+R+ A D +  W+    
Sbjct: 565  YSPQEWASDPEMFPRVLHPADRESVLAA-HARANARGEPLELEYRLIARDGRVVWVRDSS 623

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + ++ G+     G+  DITEQK     ++  AF D LTG+PNR  F+DRL   L  + 
Sbjct: 624  IVLRDAEGNPRWRQGLMVDITEQKNLEARLVHLAFHDPLTGLPNRALFMDRLEHALARAG 683

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               ++   V+ ID+D +K +ND LG   GD +L  + RR+    +  D +ARL G+ F +
Sbjct: 684  RSGDV-LAVLFIDLDNFKFVNDSLGHEAGDRLLALVARRLSGATRPGDTVARLGGDEFTV 742

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L    +  + A  A  + + +  P  +  RE+ V+AS+G +  T+   +  E+++ A+L
Sbjct: 743  LLEGIADGGEAARVAGRVAEVLREPFRVAGRELFVSASVGISVSTAGSGSVEELMRGADL 802

Query: 680  AMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK  G     V  F +S    DR+ ++ DL  AV   EL L Y P++RL D  +V 
Sbjct: 803  AMYEAKREGKDRYRVFDFGMSRTAHDRLRLENDLRRAVGRDELRLYYQPVVRLGDGRVVA 862

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EAL++W+HP+ G +    F+ +AEE  MI  I   +LE        WR Q   P + + 
Sbjct: 863  FEALLRWEHPRRGILLPDRFVPLAEETGMIVGIGRRVLELACSRAAGWRRQ--EPSLAVS 920

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            +NI+++ L+  +  E +  ++ +T   P  + L  +ES  M  P  +   L RLR+ G+ 
Sbjct: 921  VNISARQLVRPDFVEEVGRILQRTGLEPEGLVLEVTESAAMDEPGEAARALQRLRERGVR 980

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIA 915
            L LDDFGT  S LSYL  +P   +K + S + G      +  ++  +I +++ +    +A
Sbjct: 981  LALDDFGTGYSSLSYLRRLPVCFLKIDRSFVEGLGGDSGSGVLVGGVIALSRELGFEPVA 1040

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + I     ++ L  +GC+  Q  + ASP+   +  +L++ 
Sbjct: 1041 EGIETPGQLERLLELGCELGQGYYFASPMPEGAAGELVRS 1080



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 31/149 (20%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               +        ILG     + G     L  +    R+  R  + +          YE 
Sbjct: 427 RGRILEVNRAYTEILGYEPEEVVGAP--VLGRVVPEHREIARRRIAAGYDRP-----YEV 479

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
                D +   + IR R  +   G  +R   +  D+TE+K++                  
Sbjct: 480 EAVRKDGRRVHLEIRGR-QATYRGRRVRITAM-RDVTERKRA------------------ 519

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVID 572
                  L    +         P V+ ID
Sbjct: 520 ----ERELREAQEQYRRLVEQLPAVVYID 544



 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 14/175 (8%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                    +A    +  ++    L+    +  ++   T +   +A     + +      
Sbjct: 234 ALAGECLASVAEFGEVVLELHLSPLLREGRVEGVIGVATDVTGRVA---AERRLRESESE 290

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FR 465
                    D V   D     +  +    ++L  A     G +   +  +   ++   F 
Sbjct: 291 LRAVFAAMTDAVLVLDREGRYLRVSSADPSLL-YAPAE--GRVGKTVHEVLPREQARLFM 347

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             +   +   R  +  E+ +     +  W   R+ PM        R + +A DIT
Sbjct: 348 DAIRRALEGGR-TIGVEYELPTG-GRSRWFSARVSPMPGG-----RVVWVARDIT 395



 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 50/185 (27%), Gaps = 15/185 (8%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVI---LIGFTVIQHVLATGYFSQGIFSDGE 405
           +  I +        + ++        L  + +    +     + + A     + +     
Sbjct: 113 VGVISVARPEGGFGERELQVLVECAELAAVALENARLYAEAREELAARRRAEEALRRSEA 172

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R    V GS   ++  D               +GL    + G        I  +      
Sbjct: 173 RLRAVVAGSPVTMFALDPSGVFTLAEGRGLERMGLLPEEVVGRSA--FEVIGGD--PRLA 228

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   +         EF           + + + P+    G +   IG+A D+T +  +
Sbjct: 229 ADLRRALAGECLASVAEF-------GEVVLELHLSPLL-REGRVEGVIGVATDVTGRVAA 280

Query: 526 LEGIL 530
              + 
Sbjct: 281 ERRLR 285


>gi|158333247|ref|YP_001514419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158303488|gb|ABW25105.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 754

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 155/598 (25%), Positives = 277/598 (46%), Gaps = 8/598 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +Q   + G    +  +   +   +       Q +     R    +    D+VW   +
Sbjct: 129 RSHLQDEQLIGQNRTLRAMNAQLQGEIDERQLVQQKLQESETRLESILNSLDDVVWSAAV 188

Query: 424 VR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +   P    + G    S       WL  +H  DR       D  +    G L  E
Sbjct: 189 EEFQLLYLNPAAEAVHGYPVSSFLSNPDLWLEVVHPADRHQMIHFFDQLL--VAGSLNIE 246

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           +R+   D +  W+  R   ++   G   R  GI  DITEQK++   ++ +AF D LTG+P
Sbjct: 247 YRILRPDGEIRWLKNRGHVITGDQGRPHRLDGIIYDITEQKRAQAQLIHDAFHDELTGLP 306

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR   ++R++  L       + +  ++ ID+D++K IND LG  VGD +LV++   +   
Sbjct: 307 NRNLMMERISQSLKRQHRTSDYQFALLFIDLDRFKIINDSLGHIVGDQLLVAIAHLLENC 366

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D +ARL G+ F I+L            A  + +++  P  + E  +   +SIG A 
Sbjct: 367 VRTSDTVARLGGDEFTILLDGIQGIEDAIHVAERILETLKSPFQVGEHSVFTGSSIGIAY 426

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSEL 720
            +      + +L++A++AMY AK  G      F           + ++ DL  AV+  E 
Sbjct: 427 NSVQYDDPTLLLRDADIAMYRAKSLGKGCFVVFSPEMHAQTLSLLKLERDLRSAVDRQEF 486

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PII L   ++  +E L++W HP  G +  SEF+ +AEE  +I  I  ++L+   +
Sbjct: 487 VLYYQPIIDLQSGDLTDVEVLVRWQHPDRGLVMPSEFIPLAEETGLIVEIGQWVLQEACQ 546

Query: 781 DIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            +  ++ Q      +   +N++S+ L D    + +  ++S++      +KL  +ES++M 
Sbjct: 547 TLRDYQQQFASATELKFSVNLSSEQLQDPNFIQTVDRVLSQSGLDGRYLKLELTESMLMS 606

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           + E+    L +LR   I+++LDDFGT  S LSYL   P DT+K + S ++      K   
Sbjct: 607 HEEKHIKTLQQLRDRSITISLDDFGTGYSSLSYLYRFPLDTLKIDQSFVSRMISEPKDAE 666

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ +II +A+ +   +IA+ I  E ++  L ++GC+  Q    + P+    + + L+ 
Sbjct: 667 IVNTIISLARTLNMDVIAEGIETEEEVLHLKKLGCERGQGYWFSPPMSQEKLEEHLQA 724


>gi|322419792|ref|YP_004199015.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320126179|gb|ADW13739.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 1097

 Score =  582 bits (1501), Expect = e-163,   Method: Composition-based stats.
 Identities = 162/669 (24%), Positives = 299/669 (44%), Gaps = 24/669 (3%)

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF-IGLWMAITKRLDN 364
                  +  + + +     + +   +   R+V     +        + + M      + 
Sbjct: 293 RLTGWTIVATSLLAILAGSMVAFFTSRSITRSVKGCMDFAGRLAGGDLAVRMEAGGDNEF 352

Query: 365 DIIQPALVGGLVLIV---ILIGFTVIQHVLATGYF------SQGIFSDGERQSLAVLGSG 415
             +  AL      +    +L      +   A           +       ++  A+  S 
Sbjct: 353 GRLATALNCMADELQGHRLLQEERTAELAGANSALETEIAEHRDAEEALRQRQRAIDSSS 412

Query: 416 DIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSF 471
           + +   D   +    +   P    I G A+  + G     L      DR+     ++   
Sbjct: 413 NGIMITDALELDHPIIYVNPAFERITGYAASEVLGRNPRLLCS---GDREQLGLEVIRVA 469

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +   R     E R    D    W  + + P+ N+ G++  Y+GI NDITE+K+  E +  
Sbjct: 470 LCELREG-HAELRNYRKDGSLFWNALSVSPVLNAAGEVTNYVGIVNDITERKRYEEQLEY 528

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D LTG+PNR    DR+   L  +      +  V  ID+D +K IND LG  +GD +
Sbjct: 529 QSNHDGLTGLPNRNLLGDRIGQALTYAERYQR-QTAVFFIDLDHFKFINDSLGHDMGDKL 587

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L    RR+ E ++  D +AR  G+ F I+L     S   A  A  ++ ++  P  + E E
Sbjct: 588 LQIAARRLSECVRSIDTVARHGGDEFVIVLSDLAVSEDAAKVARKIQDAVCRPYQIGEHE 647

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKE 709
           + V+ S G + +      +  +LKNA++AMY AK  G N+ + +          R+ +++
Sbjct: 648 LVVSCSTGISLYPKDGSDAQVLLKNADVAMYRAKQCGRNNFQFYTGDLNDIVLARLTMEK 707

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+E  E  + Y P + L+   I G+EAL++W  P+ G IS + F+ +AEE  +I A
Sbjct: 708 YLRRALERDEFLVHYQPKVDLLSGRITGMEALVRWQSPELGFISPASFIPLAEETGLIVA 767

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L        +W+D    PP+ + +N++ +     +L + +  +  +T  +P  I+
Sbjct: 768 IGEWVLRTACAQNKAWQDDGL-PPMVVAVNLSPRQFRQEDLADTVHRIAEETGLAPRYIE 826

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L   ES++M + + +  +L  L+++G+ LT+DDFGT  S LSYL   PFD +K + S + 
Sbjct: 827 LEVVESLLMDDVDGAVAMLDALKELGVQLTMDDFGTGYSSLSYLKRFPFDMMKIDQSFVR 886

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI+R++I +A  +   ++A+ I  E  +  L  + CD +Q  + + P+   
Sbjct: 887 DITRDPGSAAIVRTVISLAHTLNLRVVAEGIETEGQLGYLRGLACDEMQGFYFSRPVPAA 946

Query: 948 SILKLLKER 956
              ++L+++
Sbjct: 947 EFEQMLRDQ 955


>gi|296133232|ref|YP_003640479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296031810|gb|ADG82578.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 798

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 270/568 (47%), Gaps = 7/568 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            +    + +  + +     V  +  I+  W +             + G  +  + G    
Sbjct: 206 DSKQALEELRQERDFSQSLVDNARTIIMLWAMDGTITLFNKYAEELTGYTAAEVIGKK-- 263

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W       +       L             E    A D     ++       ++ G  L 
Sbjct: 264 WWEIFTPKEIKPAIPELLERFQQGEVIETGEHPWIAKDGGRIEILWTHTLSYDAEGKPLA 323

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I +  DIT++K++ E I   A+ D LT +PNR  F DRL   L  +  +  L   VM I
Sbjct: 324 IISMGIDITDRKRAEEIINHMAYHDPLTDLPNRALFNDRLKLALAHAKRNKQL-LAVMFI 382

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG A+GD VL  + +R+ E L+  D +AR+ G+ F +I         +A
Sbjct: 383 DLDRFKLINDTLGHAMGDRVLKDVAQRLTECLREGDTVARIGGDEFILIFPQIAKEQDVA 442

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A+ + +++  P  +  +E  +T SIG A +      +  ++KNA+ A+Y AK +G  +
Sbjct: 443 KIALKIIETMKRPFKVEMQEFHLTTSIGVAIYPHDGQDAETLVKNADSALYLAKEQGNTY 502

Query: 692 V-ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
              +  ++    +R+  ++ LC A+EN E  + Y P + ++  +I G+EAL++W HP+ G
Sbjct: 503 QLYTPSMNDKAYERLNTEQALCKALENDEFEVHYQPQVNIITGQITGMEALVRWKHPEKG 562

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   +F+ IAEE  +I  I  ++L        +W+D    PP+ +++N++++  L   L
Sbjct: 563 LVYPGDFIQIAEETGLIIPIGEWVLRTACLQSKAWQDA-GYPPVTVVVNLSARQFLQQNL 621

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E +  ++ +T   P  ++L  +E V+M + + +  +L  L K+GI + +DDFGT  S L
Sbjct: 622 VETITRILQETGMDPKWLELEITEGVIMKDVDYTVKVLQELAKMGIRIAIDDFGTGYSSL 681

Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL   P +T+K + S + G  S  +  AI+ +II +A+N+   ++A+ +  E     L 
Sbjct: 682 NYLKRFPINTLKIDRSFIQGVVSDIQDAAIVSTIIVLARNLNLKVVAEGVETEEQYLFLR 741

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
              C  +Q    + P+       LLK +
Sbjct: 742 GKQCYDMQGYWFSRPVPAEEFEGLLKRQ 769



 Score = 38.0 bits (87), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 19/163 (11%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---------VT 429
             L+   + ++V A       ++   E        S +    +  +R+            
Sbjct: 65  GFLLYLLMRRYVSALAQSEMELYVREELFRTVQETSHEGFMIFTSIRNEQRKIIDFEVAY 124

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
              + A I+G    ++ G        +       F   ++          ++ +R+   +
Sbjct: 125 CNSEAARIMGFRVENIIGHSLLKAIPVFKE-NGLFEIFVNIVETGVSKHFEHSYRL---N 180

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               W       +   +G    +    +DIT+ K++LE +   
Sbjct: 181 GCNLWFRNTA--VKAGDG----FAVCFSDITDSKQALEELRQE 217


>gi|291614045|ref|YP_003524202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584157|gb|ADE11815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 694

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 149/698 (21%), Positives = 293/698 (41%), Gaps = 30/698 (4%)

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L  +  +    Y+    +  +A+   ++     V A +  +T    V        Y    
Sbjct: 8   LGTDERNGVHHYLLPVVLMTLALWVRLT--IAPVQAGLQYLTFFPAVALSCILGGYRAG- 64

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
               AV++                +I       +    +     +  +++ F V      
Sbjct: 65  --LVAVIIGATCATYIFTPPYYSFSIESF-QASLWSNTVFF---MDGLIVSFAVEAMHRY 118

Query: 393 TGYFSQGIFSDGE-----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              ++  + +  E     R +     S + +   D     +          G +   + G
Sbjct: 119 RQKYASELKTAEESAAWLRIASVAFESQEGIMITDSKGRILRVNKAFTESTGYSVDEIIG 178

Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              R      H  D   +  + +S    R G  Q E   R  + + +   + I  + +++
Sbjct: 179 QTPRLLKSNRH--DSAFYAAMWESI--TRSGSWQGEVWDRRKNGEIYPKWLSITAIKDAD 234

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G++  Y+G   DI+E+K + E I   AF D LT +PNR+   DRL   +  +  +     
Sbjct: 235 GNVTNYVGTHTDISERKTAEEEIRNLAFYDPLTQLPNRRLLQDRLQHAMSSTERNRKG-G 293

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K IND LG   GD++L  + +R+   ++  D ++R+ G+ F ++L   +N
Sbjct: 294 ALLFLDLDNFKSINDTLGHTAGDNLLQQVAQRLTSCVREDDTVSRIGGDEFVVMLEYLSN 353

Query: 627 S-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                  +       +   +  P  L  +E+  T SIG   +  ++    ++ K A++AM
Sbjct: 354 EVLEAAAQAETIGEKIIAELNQPYYLGGQELYNTPSIGITLFDDNRNGYEDLFKQADIAM 413

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N +  F        + RV ++ +L  A+++ +  L Y   +        G+E
Sbjct: 414 YQAKKSGRNTLRFFDPKMQGSINTRVALERELRKALDSQQFRLHYQIQVD-SSGLPFGVE 472

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP+ G +   EF+ +AEE  +I  I  ++LE   + +  W        + + +N
Sbjct: 473 ALIRWLHPERGLVPPFEFISLAEETGLICPIGEWVLETACKQLKLWERHELTQDLIMSVN 532

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++K    ++    +   I +   +PS +KL  +ES+++   E +   +  L+ +G+  +
Sbjct: 533 VSAKQFYQSDFVVKVLEAIHRHDVNPSLLKLELTESMLLDKIEDTISTMNALKAVGVRFS 592

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S L YL  +P + +K + S +          AI+ +II MA ++   +IA+ 
Sbjct: 593 LDDFGTGYSSLQYLKRLPLNQLKIDRSFVRDIAVDSSDEAIVSTIIAMAHSLNLDVIAEG 652

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +   + L   GC + Q      P+    +  +LK+
Sbjct: 653 VETDEQKQILLNKGCIHYQGYLFGKPVPIEQLEVMLKQ 690


>gi|327538467|gb|EGF25131.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopirellula baltica WH47]
          Length = 739

 Score =  581 bits (1499), Expect = e-163,   Method: Composition-based stats.
 Identities = 166/587 (28%), Positives = 294/587 (50%), Gaps = 22/587 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    I   L      Q +    ER +L   G+ D +WDW++V   +  +P   +++GL 
Sbjct: 163 VTIARISTQLQLKSALQRLRQSEERYALTARGTNDGMWDWNLVTGELYLSPRWRSMVGLD 222

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             S       W+  IH  DR   +  L++ +       + E R++     + WM+ R   
Sbjct: 223 GVSWTPHGSEWMDLIHHEDRRRVQLDLEAHLCGETDHFETELRMQDGHQTYRWMLCRGLA 282

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +S+G   R  G   DITE K +          D LTG+PNR  F DR+   +D  A +
Sbjct: 283 VKDSHGTAYRIAGSLTDITEGKVA----------DALTGLPNRMLFNDRVQRCVDHQARN 332

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGII 620
              R  V+ +D+D +K +ND  G   GDD LVS+  R+   L+  D I+AR+ G+ F ++
Sbjct: 333 PQNRFAVIFMDVDDFKLVNDHFGHDAGDDFLVSIASRLDTSLRKSDAIIARMGGDEFAVL 392

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS------SEML 674
           L +  +  +    A+ +   +  P  + +REI   AS+G         +S       E+L
Sbjct: 393 LENIRHVDEAVAVAMRLHDKMRAPFPVGDREILTRASMGIVVSEFDPESSVPQATGEELL 452

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMD 732
             A+ AMY AK++       F       + + ++    L  ++E  EL L+Y P+++L D
Sbjct: 453 VRADTAMYFAKNQSELPYAIFNDDMLAENMLRLELGSQLRHSLERDELALLYQPMVQLCD 512

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +  G EAL++W+HP+ G +S + F+ IAE   +I  I  ++L +  +  + W+ +    
Sbjct: 513 GKTAGFEALLRWEHPEHGTVSPNTFIPIAESNGLIIEIGKWVLRKACQQAMQWQKEFGR- 571

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           PI I +N++ + L      E +   + +T   P  +KL  +ES +M +PE +  LL +LR
Sbjct: 572 PIMISVNVSVRQLSSTGFVEAVTETLEETKLQPECLKLEVTESFLMQDPESTIELLHQLR 631

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           +IG+++ +DDFGT  S LSYL  +P D +K + S +     +EK  +++RSI+ +AK++E
Sbjct: 632 RIGLTIGIDDFGTGYSSLSYLHRMPLDILKVDRSFVESMFDSEKNASLIRSILALAKSLE 691

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             ++A+ +     ++ L  +GC ++Q  + + P+      +L+  R+
Sbjct: 692 LNVVAEGVETLAQLQRLQDLGCHFVQGFYFSQPVKPECASELINHRW 738


>gi|32472401|ref|NP_865395.1| hypothetical protein RB3251 [Rhodopirellula baltica SH 1]
 gi|32443637|emb|CAD73079.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 739

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 166/587 (28%), Positives = 295/587 (50%), Gaps = 22/587 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    I   L      Q +    ER +L   G+ D +WDW++V   +  +P   +++GL 
Sbjct: 163 VTIARISTQLQLKSALQRLRQSEERYALTARGTNDGMWDWNLVTGELYLSPRWRSMVGLD 222

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             S       W+  IH  DR   +  L++ +       + E R++     + WM+ R   
Sbjct: 223 GVSWTPHGSEWMDLIHHEDRRRVQLDLEAHLCGETDHFETELRMQDGHQTYRWMLCRGLA 282

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +S+G   R  G   DITE K +          D LTG+PNR  F DR+   +D  A +
Sbjct: 283 VKDSHGTAYRIAGSLTDITEGKVA----------DALTGLPNRMLFNDRVQRCVDHQARN 332

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGII 620
              R  V+ +D+D +K +ND  G   GDD LVS+  R+   L+  D I+AR+ G+ F ++
Sbjct: 333 PQNRFAVIFMDVDDFKLVNDHFGHDAGDDFLVSIASRLDTSLRKSDAIIARMGGDEFAVL 392

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS------SEML 674
           L +  +  +    A+ +   +  P  + +REI   AS+G         +S       E+L
Sbjct: 393 LENIRHVDEAVAVAMRLHDKMRAPFPVGDREILTRASMGIVVSEFDPESSVPQATGEELL 452

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMD 732
             A+ AMY AK++       F       + + ++    L  ++E  EL L+Y P+++L D
Sbjct: 453 VRADTAMYFAKNQSELPYAIFNDDMLAENMLRLELGSQLRHSLERDELALLYQPMVQLCD 512

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +  G EAL++W+HP+ G +S + F+ IAE   +I  I  ++L +  +  + W+++    
Sbjct: 513 GKTAGFEALLRWEHPEHGTVSPNTFIPIAESNGLIIEIGKWVLRKACQQAMQWQEEFGR- 571

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           PI I +N++ + L      E +   + +T   P  +KL  +ES +M +PE +  LL +LR
Sbjct: 572 PIMISVNVSVRQLSSTGFVEAVTETLEETKLQPECLKLEVTESFLMQDPESTIELLHQLR 631

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           +IG+++ +DDFGT  S LSYL  +P D +K + S +     +EK  +++RSI+ +AK++E
Sbjct: 632 RIGLTIGIDDFGTGYSSLSYLHRMPLDILKVDRSFVESMFDSEKNASLIRSILALAKSLE 691

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             ++A+ +     ++ L  +GC ++Q  + + P+      +L+  R+
Sbjct: 692 LNVVAEGVETLAQLQRLQDLGCHFVQGFYFSQPVKPECASELINHRW 738


>gi|189426377|ref|YP_001953554.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422636|gb|ACD97034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 965

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 146/585 (24%), Positives = 285/585 (48%), Gaps = 10/585 (1%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +VL            +         +    ER  + V    D+V   D+  + +  +P  
Sbjct: 373 VVLDGREHLLESFVDISRRKQVENSLKESEERYRMLVENQADLVIKTDMTGNLLFVSPSF 432

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             + G     + G     +  +           ++  +       + E+     + +  W
Sbjct: 433 CKLFGQTEEKLLGKALLPVIML-PEQLATA-AGMEQMICSDTSYYR-EYLSPTREGK-RW 488

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +   +R + N +G     IG+  DIT++K +   I   A+ D +TG+PNR    DRL   
Sbjct: 489 IGWALRCIFNQSGQAEAIIGMGRDITDRKTAESTIEQLAYHDPVTGLPNRTLLHDRLQLA 548

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++ +  D      ++ +D+D++K IND LG A+GD +L  +  R+ + ++  D +ARL G
Sbjct: 549 INRAERDSQG-VAILFLDLDRFKAINDSLGHAMGDQLLRLVGNRLLDCVRSSDTVARLGG 607

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++ + +N   +    + + + +  P  + + E+  ++SIG + +      + E+L
Sbjct: 608 DEFVVLISALDNDHAVGSVVMKILEQLCEPYQIDDHEVYTSSSIGISLFPRDGRDAEELL 667

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           KNA++AMY AK  G N    F    +   ++R++++  +  A+E  E +LVY P + L  
Sbjct: 668 KNADMAMYQAKEAGRNTCHFFSPELNMRATERLLLESTMRRALEREEFFLVYQPQMELRS 727

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G+EAL++W HP  G +  + F+ IAEE  +I  +  ++L    R  + W+ +   P
Sbjct: 728 GHIAGIEALLRWRHPDLGVVPPNNFIPIAEETGLIVPLGEWVLAEACRQAVRWQQE-GQP 786

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P+ + +N++++      L   ++ ++ +T   P+ ++L  +ES VM NPE + L L +L+
Sbjct: 787 PLRMAVNVSARQFRQRNLGLRIEKILMETGLDPALLELELTESAVMENPEEAILTLRQLK 846

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           K+GI+L++DDFGT  S LS+L + P D +K + S +           I  +II +A +++
Sbjct: 847 KMGITLSIDDFGTGYSSLSHLKHFPIDRLKIDRSFVKHVTRDHNDATIAEAIIALAHSMK 906

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            T++A+ I     ++ + +  CD +Q  +++ P+        LK 
Sbjct: 907 LTVVAEGIEHSEQMEFMHQRHCDTMQGYYLSRPVTAEEFGTFLKR 951


>gi|317127773|ref|YP_004094055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
 gi|315472721|gb|ADU29324.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
          Length = 1016

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 156/611 (25%), Positives = 284/611 (46%), Gaps = 17/611 (2%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               +        LV      +  +GFT+   +L        I +  E+  +    + D +
Sbjct: 409  WGFIAIVGPIDDLVLISAADITQVGFTISAALLERDELFLQIQTIAEQLEIVSSTTNDGI 468

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
            WDWDI+ ++VT       I       +     ++L  +H  D  N          Y    
Sbjct: 469  WDWDIITNQVTWNVRSLDIFSSVGEPLPTDSESFLNLVHPEDYYNVIESFKMH-QYEGSS 527

Query: 479  LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            L+ EFR++       W+ +    + + NG  +R IG   +I+E+K+  + I+  AF D L
Sbjct: 528  LKMEFRIQGEKEGEMWVYLTGDSIRDENGQAIRIIGSITNISEKKQQEKQIMHLAFHDGL 587

Query: 539  TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
            TG+PNR+    RL   +  +    N +  +++ID+D++K IND LG   GD+++  +   
Sbjct: 588  TGLPNRRLLRSRLELAMTDADRY-NYKLGLLLIDLDRFKVINDTLGHQAGDELIQKVADV 646

Query: 599  I----------GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            +              +    +ARL G+ F I+L    +   +   A  + +    P  + 
Sbjct: 647  LELTMRSPDTHSRAKQEHTTVARLGGDEFIILLTHITDVSDLQASANLIIEKFKEPFFIQ 706

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706
             +++  +ASIG + +         +  NA++AMY AK  G N +E +         +R  
Sbjct: 707  NQDVFTSASIGISVYPDHGRDYDSLTGNADIAMYRAKENGKNQMEMYSSEINTLTMERFQ 766

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            ++  L  A+E  E  L Y P   L + E++G+EAL++W+    G +S  EF+ +AEE  +
Sbjct: 767  MENQLRKALEREEFVLHYQPQFHLENNEVLGIEALLRWNSSDRGIVSPMEFIPLAEETGL 826

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  I  ++L+   R    W DQ + P I + +NI+++ L + +  + +++++  T     
Sbjct: 827  IIPIGYWVLKEACRQNKRWMDQGHRPKI-VSVNISARQLQEKDFVQAVKSILEDTQLPTQ 885

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             + L  +ES  + N + S  +L  L ++GI + +DDFGT  S L+ L  +P   +K + S
Sbjct: 886  YLCLEITESTAIKNIDISMNMLKELGELGIKIAIDDFGTGYSSLAMLKQLPISNIKIDKS 945

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +      +   AI+R+II MA ++E T+ A+ +  E     L +  C+Y+Q    + PL
Sbjct: 946  FIRDMDVDKDDGAIVRAIIAMAHSLELTVTAEGVETEDQKNILLQEKCNYLQGYLYSKPL 1005

Query: 945  GFNSILKLLKE 955
                 L+ ++E
Sbjct: 1006 PAEECLRFVQE 1016


>gi|83310313|ref|YP_420577.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945154|dbj|BAE50018.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 880

 Score =  579 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 157/576 (27%), Positives = 279/576 (48%), Gaps = 17/576 (2%)

Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A       +    +  +LA   +  S D +   D  +      P    + G  +  + G 
Sbjct: 301 ALKERDAALLRSRKDLNLARKVIEASLDGIMIVDSTQKIEFVNPAFTHMTGYTAEEIIGK 360

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             N L   H +  + F   + + +  +    Q E   R  + + +   + I  + +  GD
Sbjct: 361 NPNVLKSGHHD--ETFYKHMYTVLEAQ-DYWQGEIWNRRKNGEIYPEWLTINVIRDDTGD 417

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I +Y  I +DITE+KK+ E I   A+ D LT +PNR+ F DRL   +  +      +  +
Sbjct: 418 ITQYAAIFSDITERKKTEERIKNLAYFDVLTALPNRRLFTDRLQIAIANAHRHGQ-QLAI 476

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D +K+IND LG  VGD VLV    RI   ++  D +ARL G+ F ++L   ++  
Sbjct: 477 MFLDLDLFKRINDSLGHGVGDQVLVETAARISHCVREGDTVARLGGDEFTVLLPELDHLE 536

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  +   +  P  + + E+ VT SIG A +     T   ++KNA+ AMY AK  G
Sbjct: 537 DVAKLAERVIAHVKQPFLVDDNELYVTTSIGIAVYPEDGTTVEALIKNADTAMYRAKDLG 596

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N  + +   +++   +R+ ++  L  A+   E  LVY   +   D  + G+EAL++W H
Sbjct: 597 RNSYQLYTAAMNARSFERLTMESSLRHALTREEFRLVYQVKVDSEDGRMSGVEALVRWHH 656

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S  +F+ +AE + +I  I  ++L    R    W D   +PP+ I +N++++  +
Sbjct: 657 PEMGLVSPVDFIPLAEAMGVISDIGEWVLRTACRQCKHWMD-LGLPPVRIAVNVSAQQFV 715

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + ++ E +   + +T   P  ++L  +E+V+M   +    +L  LR +G+ +++DDFGT 
Sbjct: 716 ETDVPEVVARALRETGLPPQYLELELTETVLMQRVDEVVAVLKSLRAMGVRISIDDFGTG 775

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS-------TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            S LSYL  +P D +K + S +          TE    I+ +II +A N++   IA+ + 
Sbjct: 776 YSSLSYLKRMPIDALKVDRSFVNDIFDGQSKVTEDGAEIVSTIINLAHNLKLKAIAEGVE 835

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                + L   GCD +Q   ++ P+    ++ L   
Sbjct: 836 TPEQAEFLRSKGCDEVQGYLISRPVSGEDLISLFDR 871


>gi|16331091|ref|NP_441819.1| hypothetical protein sll0267 [Synechocystis sp. PCC 6803]
 gi|1653584|dbj|BAA18497.1| sll0267 [Synechocystis sp. PCC 6803]
          Length = 1578

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 149/586 (25%), Positives = 279/586 (47%), Gaps = 14/586 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            +      IQ   A       +  + ER  LA+  +    +D ++   +   +P    ILG
Sbjct: 996  LSFALDAIQLDQANQRAQNQLGENEERLRLALEAANQGFYDLNLQTGQAVVSPQYGQILG 1055

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                      + WL  IH  D+   R I D ++  +  R   E R R    Q+ W++   
Sbjct: 1056 YDPQYFQETEQRWLERIHPQDQQRVREIYDQYIQGKIPRYAVECRQRTMAGQWKWLLSLG 1115

Query: 500  RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + +  +S G  LR +GI  D+TE+K++   I   A+ D LT +PNR+  LDR    L L+
Sbjct: 1116 KIVEWDSQGKPLRMLGILTDVTERKQAEAQIENLAYYDPLTALPNRRLLLDRAENALALA 1175

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                +    +++ID+D +K +ND  G   GD +L  + +R+ + L+  D +ARL G+ F 
Sbjct: 1176 QRSKHF-GAIVLIDLDGFKTLNDARGHDSGDRLLQMVAKRLADSLRDSDTVARLGGDEFI 1234

Query: 619  IILISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L    +  ++A          +R+++A P  L   ++ ++ SIG   +       S++
Sbjct: 1235 VLLPELAHDRELAARLGLGVGEKIRQALATPFTLEAEQVQISGSIGITLFPKLNEKVSDL 1294

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
             K A+ AMY AK  G + V  F          R  ++ DL  A+E  +  +   P +   
Sbjct: 1295 FKEADTAMYQAKKAGRDKVCLFESQMQLEVESRFALEADLRSALEQKQFQVYLQPQVD-S 1353

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
                +G EAL++W+HP  G I  + F+ IAEE+ +I  I  F+LE++ + +   +     
Sbjct: 1354 HGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEIGLIGGIGDFVLEQVCQYLARLQQLGLT 1413

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
              + I IN++ +        + ++ L++ T   P R+ L  +E +++ +  ++   +  L
Sbjct: 1414 --LRIAINVSPRQFRQANFAKEIKNLLACTGVDPYRLTLEVTEGLIVEDTHQAIATMFEL 1471

Query: 852  RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
            + +GI  ++DDFGT  S LSYL  +P + +K + + +  + +     A++ +II +A+  
Sbjct: 1472 QTLGIHFSVDDFGTGYSSLSYLKRLPLNELKIDRAFVQDAPQDLNNAALVEAIISVARTF 1531

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               I+A+ +  E  ++ L ++GC++ Q      P+  +   + L  
Sbjct: 1532 NLAIVAEGVETEEQVQFLAQLGCNFYQGYFYGRPMPIDEFHQKLTA 1577



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 70/214 (32%), Gaps = 28/214 (13%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDI-VRDRVTTTPDIAT 436
            +L   +         ++++ I    ER        + + ++  D      +     + T
Sbjct: 685 ALLNTVSQFLSRFLESHYTEIILERNERNYREIFNSTHEAIFIQDAHQATVLDVNQPMLT 744

Query: 437 ILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFH 493
           + G      + G                    ++  +   R      +E+  +  D    
Sbjct: 745 MYGYGNKEEVIGRPIGDFSADKP---GKTEAEIEQKLRQARNAEPQMFEWLAKKQDGSLF 801

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP------NRQSF 547
           W  + I+P    +G   R + +  DI+E+K++ + I   +       +       NR   
Sbjct: 802 WAEVSIQPTV-IDGK-SRLLAVVRDISERKQNQQRIEYLSR------LYATLSQVNRAII 853

Query: 548 LDRLTTILDLSATDDNL---RPTVM---VIDIDK 575
            +R    L  +  D  +   + +++   +ID D+
Sbjct: 854 ENRERDDLFRAICDVGVAVGQFSLIWFGLIDPDR 887


>gi|56476956|ref|YP_158545.1| hypothetical protein ebA2702 [Aromatoleum aromaticum EbN1]
 gi|56312999|emb|CAI07644.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 1039

 Score =  579 bits (1492), Expect = e-162,   Method: Composition-based stats.
 Identities = 149/560 (26%), Positives = 253/560 (45%), Gaps = 16/560 (2%)

Query: 404  GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             ER   A+     S   +   D      +  P   TI G  +  + G   +         
Sbjct: 472  EERMRQAMVVFKASSQGIMTTDAQGVITSVNPAFCTITGYLAAEVIGRKSSMFK---PER 528

Query: 461  RDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             +   F  +  S V    G    E   R +D   +   + I  + +++G I  Y+ + +D
Sbjct: 529  HEATFFDAMWTSIVE--SGSWAGEVWSRRSDGDRYPQWVTITAVRDTDGRIAEYVTLFSD 586

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            ITE+K+    +   A  D LTG+ NR    DRL   L  +      +  ++ +D+D +K 
Sbjct: 587  ITERKQQEVAMWRQANFDPLTGLANRSLLQDRLDRALAHARRH-GCKVGLLFLDLDGFKW 645

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++LV + RR+   ++  D +ARL G+ F +++    +   +   A  + 
Sbjct: 646  INDSLGHDVGDELLVDVARRLNSCVRDEDTVARLGGDEFTVVVHDLADRADLGAIADKLV 705

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +  P  L      ++ S+G   +         +L+NA++AMY AK  G N  + +   
Sbjct: 706  AVLREPFALRGARHHISGSVGITVFPDDGDDVQTLLRNADIAMYKAKQAGKNRAQPYAPH 765

Query: 699  SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                      ++ DL +AVE     L Y PI+      +VG EALI+W HP+ G IS  E
Sbjct: 766  MQADALARVHLEADLRMAVEQRAFELHYQPIVDCASGALVGAEALIRWKHPERGMISPLE 825

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I  ++L  + R    W  +   PP+ + +N++     +  L E ++ 
Sbjct: 826  FIPVAEECGLIVPIGEWVLREVVRQRRDWLAR-GHPPLRLTLNVSGVQFREAGLPELVRT 884

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+++   + S +    +ESV+MG  E     +  +++ GI   LDDFGT  S LSYL   
Sbjct: 885  LLAEFGTARSSLVFEITESVLMGGSENVEARMCDIKEQGICFALDDFGTGFSSLSYLKRF 944

Query: 877  PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D VK + S +           ++ +II MA ++   + A+ +      + L  +GCDY
Sbjct: 945  PVDIVKIDRSFVRDCPDDRNDATLVEAIINMAHSLGLRVTAEGVESAEQREFLRALGCDY 1004

Query: 935  IQDSHVASPLGFNSILKLLK 954
            +Q   +  PL  ++   L+ 
Sbjct: 1005 LQGYLIGKPLAADAFEALMA 1024



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 8/233 (3%)

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
           +        +  +      +     ++  G  G    + L     ++ ++ + L     +
Sbjct: 7   YVRQRRPLVVGIVVFLVAAMVSGVLVLGLGHPGDN--LGLSLNAAVVLLFSLLLGGLANQ 64

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                  +  L   +      +     +   A      G      + S A+  S   +  
Sbjct: 65  MAQLRAHRADLQRLVAARSAEVRAREAELDRAQSVAHVG-EQQLRKLSTAIECSPASIVI 123

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D         P      G  +  + G   R         D       + + + +     
Sbjct: 124 TDRSGTIEYVNPQFERSTGYTAQEVVGKNPRILKSGNRSADE---YAAMWATITH-GHVW 179

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           + EF     D   +W    I P+   +G I  ++ +  DIT QK++   +   
Sbjct: 180 RGEFENVRKDGAHYWERASIAPIRADDGMISGFVAVKEDITLQKRAERELRDR 232



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 10/149 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLAS 442
             +++ +       Q +     R       S  ++   D +    V          G   
Sbjct: 338 IVLVRDLTERVRMEQALIESELRYRELFANSRVVMLVIDPVDGRIVEANAKACEYYGYDP 397

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            S+       +       R+  R   +     +    +   R+  A  Q   + +   P+
Sbjct: 398 VSLTRMKIEDINV--PG-REPLR--FEMVQARKPDTFRCCHRL--AGGQLRDVEVASSPI 450

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILC 531
             +   +L    I  D+TE+K+  E +  
Sbjct: 451 EIAGRKLLY--SIVRDVTERKRFEERMRQ 477


>gi|95930766|ref|ZP_01313499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133246|gb|EAT14912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 678

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 149/575 (25%), Positives = 280/575 (48%), Gaps = 9/575 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            + + A     + + +  ER       S   +         +         LG     + 
Sbjct: 108 FRDITARKKTEKALQTSEERFRTIYESSVAGIAMLAPDGHFLQANSAFCNFLGYNEEELL 167

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                     H +D ++  +  +     R   +  E R    D    W  +      ++N
Sbjct: 168 QMKIT--DVTHPDDIEDTLSRRNIARANRLHSIVCEKRYIRKDGSVFWAQLSSTWFFDAN 225

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+ L  + +  DIT +K++ E I   A+ D+LTG+ NR  F DRL  ++  S    + R 
Sbjct: 226 GNPLYTVPVIQDITRRKEAEERIRELAYYDSLTGLANRTLFNDRLDQVMARSRRRQS-RF 284

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M +D+D++K +ND LG AVGD +L     R+ E L+  D +ARL G+ F IIL     
Sbjct: 285 ALMFLDLDRFKGVNDTLGHAVGDAMLRQAAERLNECLRENDTVARLGGDEFVIILSDYKE 344

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +   A  + K+++ P +L  RE+  + S+G A +      ++++L++A++AMY AK 
Sbjct: 345 DANLPRVADKILKALSSPFDLGVREVYSSTSVGIAIYPDDGDEATDLLRHADMAMYAAKE 404

Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GG+    +   +++    R+ ++ +L  A+E  E ++ Y P I L+  ++ G+EAL++W
Sbjct: 405 SGGDTFRFYSSEMNARAVSRMDMEANLRRALEQEEFFIEYQPQIDLITNKVAGVEALLRW 464

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G I  ++F+ +AEE  +I  +  +++ R+    + W  Q    P  + IN++ + 
Sbjct: 465 QHPQLGVIPPTQFIGLAEETNLILPLGEWVMRRVFEQCVMW-KQEGYLPFRVGINVSGRQ 523

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            +  +  + +  L+ +T  +P  ++   +ESVVM + + + L L  L+K+GI++ +DDFG
Sbjct: 524 FVQPDFVDMVCRLLDETGAAPELLEFEITESVVMKDVDAAVLTLEALKKLGINMAIDDFG 583

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LS L ++P + +K + S ++         AI+ + I MAK +E  + A+ +  E 
Sbjct: 584 TGYSSLSCLKHLPLNRLKIDKSFISDLQDNADDRAIVEATIAMAKRLELGVTAEGVETEG 643

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956
               + +  CD +Q  + + PL  + +    L +R
Sbjct: 644 QYGFVQKRECDEVQGFYFSRPLSPSEVADAWLIKR 678



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 4/122 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           + +  +  S D++         +         LG     +     N+   +H +   + +
Sbjct: 2   QYADLLENSNDLIQVVGFDGRIIYANRMWQETLGYGKNDL--TQLNFFDLLHADFHCDCQ 59

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   +       ++E   +            I  +   NG+     G   DIT +KK+
Sbjct: 60  DRIQRLMSGETVP-RFEVEYKTRYGHKIIAEGSIS-LYKENGEPCGIQGFFRDITARKKT 117

Query: 526 LE 527
            +
Sbjct: 118 EK 119


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC
            8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8801]
          Length = 1514

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 157/583 (26%), Positives = 269/583 (46%), Gaps = 7/583 (1%)

Query: 377  LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
            L V      + Q +       + +         A+  +    W++D+  ++V  +  +  
Sbjct: 928  LRVAERTAKLSQTIAELHQVEEILRGKETHYRQALNLTNTGSWEFDLASEKVFWSEQVEI 987

Query: 437  ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            I G+  G+  G        IH  D D ++  + + +   +     EFRV   D   HW+ 
Sbjct: 988  IWGMKPGTFRGEFDQVKAGIHPQDFDLWQQNVQACIEEGKEH-NLEFRVVHPDGSIHWVQ 1046

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                   +S G  +R  G+  D+TE+K S E +   A  D+LT +PNR     RL   + 
Sbjct: 1047 AIGNAEYDSQGHPIRLRGLVMDVTERKTSQERLNYMAHHDHLTDLPNRLLLKARLDQSIQ 1106

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             +      +  V+ ID+D++K IND +G A GD +L  L +R+ ++L+  D +AR+SG+ 
Sbjct: 1107 QATR-KRTKLAVVFIDLDRFKHINDSMGHAAGDALLQQLAQRLRQVLRSSDTVARISGDE 1165

Query: 617  FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            F  +L    +    +     +      P  L  + I +T+S+G + +    + ++ +L+N
Sbjct: 1166 FVAVLEDIEDIQHASMVVAKLMTVFEEPFPLEGQIIHMTSSMGLSLFPDDGMDTAILLRN 1225

Query: 677  AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A+ AMY AK  G N    +         + V+ +  L  A++ +E YLVY P I L    
Sbjct: 1226 ADSAMYRAKEEGRNTYCFYAEEMTSAAFEYVLFENALRGALKRNEFYLVYQPQIDLSSHR 1285

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             VG+E L++W HP+ G +S ++F+ IAE+  +I+ I  ++L R      +W DQ      
Sbjct: 1286 WVGMEVLLRWHHPELGIVSPAQFIPIAEQSGLIQEIGTWVLYRACCQAKTWLDQGIDFG- 1344

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             I +N+A+  +  N     +Q  +  +      ++L  +E +VM   E     L  L+ +
Sbjct: 1345 HIAVNVAAPQIQQNNFVHLVQDALDSSGLPSPHLELELTEGLVMHQTEDRIKQLEVLQDM 1404

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            GI L +DDFGT  S LSYL  +P + +K + S +         +AI  ++I + K +   
Sbjct: 1405 GIYLAIDDFGTGYSSLSYLKRLPINKLKIDKSFVRDIPHDTNDMAISEAVIALGKALNLR 1464

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            IIA+ +  EI    L   GC   Q    + PL    I +L  E
Sbjct: 1465 IIAEGVEQEIQATFLREKGCHEAQGYLYSKPLPPEEITQLFAE 1507


>gi|78485566|ref|YP_391491.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363852|gb|ABB41817.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 815

 Score =  578 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 154/580 (26%), Positives = 286/580 (49%), Gaps = 14/580 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++  T+++         Q +    +R +  +  + + +WDWDI  D+VT     A ++GL
Sbjct: 233 IMLDTLVKRENEIVESHQALEQSEKRLNQIMAVNHEGIWDWDIKADKVTHNQSWADMIGL 292

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRI 499
               +  P + +   +H +DR+     +      +      E+R V+    +  W+  R 
Sbjct: 293 DDNLLVHPAQVFFDAVHPDDRERVSRAVGECFKSKS-HYHMEYRFVQRNTGKEVWVQDRG 351

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             +  ++  + LR +G   ++TE+KK+ E I   AF D LT +PNR+   DRL   + ++
Sbjct: 352 DVVEWDAEENPLRMVGGFYEVTERKKAEEAIQNLAFYDPLTQLPNRRLLQDRLQQEMAVT 411

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               ++   +M ID+D +K +ND LG   GD +L  +  R+ E ++  D +AR+ G+ F 
Sbjct: 412 ERSKHV-CALMFIDLDDFKTLNDTLGHDTGDKLLRQVATRLRENVREFDTVARIGGDEFV 470

Query: 619 IILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           +IL S ++     +      A  + + +  P  L       T SIG   ++  + T  E+
Sbjct: 471 LILPSLDDDWKDAATHAELVAQKVLRVLNKPYLLDSTPYHSTPSIGVKLFSGHQETLEEL 530

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731
           LK+A+LAMY AK +G N V  +  +          ++  +  A+   +  L Y P I   
Sbjct: 531 LKHADLAMYQAKAKGRNTVRFYDTTMQEVVNAKSVMEASMRQAITGQQFVLFYQPQIN-S 589

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           + +I+G EAL++W HP+ G I+ ++F+ +AEE   I +I  ++L+     ++ W  Q   
Sbjct: 590 NGQIIGAEALVRWRHPQKGLIAPNKFIPLAEENGFILSIGRWVLQTACEQLVEWARQPAT 649

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + +N++++     +L E ++ +I +T  +P  +KL  +ES+++ + E     +  L
Sbjct: 650 AQITMAVNVSARQFHQIDLVEEVERIICQTGANPQLLKLELTESLLVKDIEDVVDKMQAL 709

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +K+G+S +LDDFGT  S L+YL  +P D +K + + +          AI R++I +AK++
Sbjct: 710 KKLGVSFSLDDFGTGYSSLAYLKRLPLDQLKIDQTFVRDIIDDSNDAAIARAVIALAKSM 769

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E  +IA+ +      + L  MGC   Q      P+     
Sbjct: 770 EFNVIAEGVENIEQHQMLIDMGCRVFQGYLFGRPVPIEEF 809


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 8802]
          Length = 1514

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 157/583 (26%), Positives = 269/583 (46%), Gaps = 7/583 (1%)

Query: 377  LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
            L V      + Q +       + +         A+  +    W++D+  ++V  +  +  
Sbjct: 928  LRVAERTAKLSQTIAELHQVEEILRGKETHYRQALNLTNTGSWEFDLASEKVFWSEQVEI 987

Query: 437  ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            I G+  G+  G        IH  D D ++  + + +   +     EFRV   D   HW+ 
Sbjct: 988  IWGMKPGTFRGEFDQVKAGIHPQDFDLWQQNVQACIEEGKEH-NLEFRVVHPDGSIHWVQ 1046

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                   +S G  +R  G+  D+TE+K S E +   A  D+LT +PNR     RL   + 
Sbjct: 1047 AIGNAEYDSQGHPIRLRGLIMDVTERKTSQERLNYMAHHDHLTDLPNRLLLKARLDQSIQ 1106

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             +      +  V+ ID+D++K IND +G A GD +L  L +R+ ++L+  D +AR+SG+ 
Sbjct: 1107 QATR-KRTKLAVVFIDLDRFKHINDSMGHAAGDALLQQLAQRLRQVLRSSDTVARISGDE 1165

Query: 617  FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            F  +L    +    +     +      P  L  + I +T+S+G + +    + ++ +L+N
Sbjct: 1166 FVAVLEDIEDIQHASMVVAKLMTVFEEPFPLEGQIIHMTSSMGLSLFPDDGMDTAILLRN 1225

Query: 677  AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A+ AMY AK  G N    +         + V+ +  L  A++ +E YLVY P I L    
Sbjct: 1226 ADSAMYRAKEEGRNTYCFYAEEMTSAAFEYVLFENALRGALKRNEFYLVYQPQIDLSSHR 1285

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             VG+E L++W HP+ G +S ++F+ IAE+  +I+ I  ++L R      +W DQ      
Sbjct: 1286 WVGMEVLLRWHHPELGIVSPAQFIPIAEQSGLIQEIGTWVLYRACCQAKTWLDQGIDFG- 1344

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             I +N+A+  +  N     +Q  +  +      ++L  +E +VM   E     L  L+ +
Sbjct: 1345 HIAVNVAAPQIQQNNFVHLVQDALDSSGLPSPHLELELTEGLVMHQTEDRIKQLEVLQDM 1404

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            GI L +DDFGT  S LSYL  +P + +K + S +         +AI  ++I + K +   
Sbjct: 1405 GIYLAIDDFGTGYSSLSYLKRLPINKLKIDKSFVRDIPHDTNDMAISEAVIALGKALNLR 1464

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            IIA+ +  EI    L   GC   Q    + PL    I +L  E
Sbjct: 1465 IIAEGVEQEIQATFLREKGCHEAQGYLYSKPLPPEEITQLFAE 1507


>gi|297538783|ref|YP_003674552.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258130|gb|ADI29975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 710

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 151/578 (26%), Positives = 272/578 (47%), Gaps = 13/578 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           IQ++       Q +     R       + + ++        +   P +A I G +    +
Sbjct: 136 IQNITQRKAAEQSLHDAEFRYRSIFENAIEGIFQTSPNGHYLIVNPALAKIYGYSSPEEL 195

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              + N    ++     R+ F   + +     +    +E  V   DN   W+    R + 
Sbjct: 196 ISVLNNIQQQLYVTPGRREEFVQAMLA----NQSVHNFESLVYKKDNSTIWISENARMVH 251

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G++L Y G   DIT +K     I   A  D+LTG+PNR    DRL   ++ +    N
Sbjct: 252 DKAGNLLYYEGTVEDITARKNYDHKIEHQAKHDSLTGLPNRYMLNDRLQQSINFADRYKN 311

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V  +D+D++K IND +G  VGD +L+ +++R+   ++  D + RL G+ F I+L +
Sbjct: 312 -KMAVAFVDLDQFKLINDSMGHEVGDQLLLIMSKRLSSCIREVDTVVRLGGDEFVILLTN 370

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N   +      +  ++A P  + E +  VT+SIG + +    I  + +LKNA+ AMY 
Sbjct: 371 IENVNDVLISMQRVLTAVAAPCVINELDYVVTSSIGISIYPDDGIEPNTLLKNADTAMYK 430

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+ + +        ++RV ++  L LA+EN EL L Y P +      I G EAL
Sbjct: 431 AKKAGRNNYQIYTQELNEALTERVTMEYRLRLAIENGELLLHYQPKVDFATGLISGAEAL 490

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W  P+   I   +F+ IAEE  +I++I  ++L    +     +++    PI I +N++
Sbjct: 491 IRWQTPEGELIPPVKFIHIAEETGLIESIGEWVLIEACKKAKELKEKMGR-PIPIAVNVS 549

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L + ++  +  T   P  ++L  +ES ++ +  +    L  L+ IGI L +D
Sbjct: 550 PRQFKQPNLAQTIKNTLELTNLDPDCLELEITESTLIDDAAKFIQTLHALKTIGIKLAID 609

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D +K + + ++         AIL++II + +++   +IA+ + 
Sbjct: 610 DFGTGYSSLAYLKDFPIDRLKIDKAFVSNLENDPANTAILKAIIVLGQSLGMKVIAEGVE 669

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                  L  +GCD +Q  + + P+       LL+ + 
Sbjct: 670 TRFQHDYLQSIGCDELQGYYFSKPIPAIEFEALLQNQL 707



 Score = 84.6 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 55/143 (38%), Gaps = 10/143 (6%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMH-GPIRNWLP 454
               D +R    ++ + + +   ++       +  +     + G     +    + ++  
Sbjct: 16  AFVHDRQRMLDTLVDNLEGLVYCNLYDQHWTMIYVSDGCKDLTGYFPDDLIFNNLVSYEE 75

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I  +DR   R  +D  V   + R + E+R+R A+    W+  R  P+ N+ G +    G
Sbjct: 76  IIFKDDRALVRYAIDEAVKQGK-RFEVEYRIRHANTDIIWVCERGNPIYNAKGKVHAIEG 134

Query: 515 IANDITEQKKSLEGILCNAFQDN 537
              +IT++K +       +  D 
Sbjct: 135 FIQNITQRKAAE-----QSLHDA 152


>gi|302342228|ref|YP_003806757.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
 gi|301638841|gb|ADK84163.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 966

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 146/570 (25%), Positives = 270/570 (47%), Gaps = 14/570 (2%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
           GI +  E+  L       + + +   D              I G  +    G        
Sbjct: 403 GIRASEEQMRLLARVFENTVEGIIVTDADGVIEMVNAAFCAITGFDAAEAVGARPSILSS 462

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D + ++ +  S      G  Q E   R  + + +   + I  + + +      +G
Sbjct: 463 GRH--DAEFYQRMWRSLADQ--GHWQGEVWNRRKNGEAYPEWLTITAIKDKSDRTTHLVG 518

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +DITE K++ E I   A+ D LTG+PNRQ F DRL   +  +    +    ++ +D+D
Sbjct: 519 VFHDITEAKRNEERITHQAYHDALTGLPNRQLFNDRLAMAIAQAHRGGHG-LALLFLDLD 577

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND LG AVGD +L ++ +R+   L+  D +ARL G+ F +++   ++   I   A
Sbjct: 578 NFKNINDSLGHAVGDMLLQAVAQRLTRWLREEDTVARLGGDEFVMLIQGASDPDYIMQVA 637

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  S++ P  +   E+ VTASIG          +  ++ NA+LAM+ AK  G N+++ 
Sbjct: 638 RRILDSMSQPFAVGPHELYVTASIGVTIHPHDGHDAQTLVANADLAMFRAKDEGRNNIKL 697

Query: 695 FRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +        ++ +  L  A+E  E  + Y P + L  +++VG+EAL++W  P    +
Sbjct: 698 FTPAMNAKVMRRMELEANLRKALEREEFEVFYQPKVELRSDKVVGVEALVRWRRPDSVVV 757

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ I EE  +I  +  ++LE+       W D      + + +N++ +   DN L +
Sbjct: 758 SPDEFIPICEETGLILPLGKWVLEQACSRAKYWHDMGFD-GLNVSVNLSPRQFQDNHLVD 816

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++++T  +P  ++L  +E VVM + + +   + RL  +G+ L+LDDFG   S L Y
Sbjct: 817 HVGEILAQTGLAPHCLELEITEGVVMHSVDEAIETMNRLSSMGVRLSLDDFGRGYSSLYY 876

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P  ++K + S +          +I+ +II M++++   ++A+ +  +  +  L   
Sbjct: 877 LKRFPMSSLKIDRSFVADIATDPDDASIVNTIISMSRSLNLQVVAEGVETKEQLDFLRSK 936

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            CD +Q  + + PL    + +LL+   P V
Sbjct: 937 RCDQMQGYYFSRPLPARELTELLEGLRPAV 966



 Score = 96.2 bits (238), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/481 (11%), Positives = 138/481 (28%), Gaps = 53/481 (11%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L    ++  V      ++ +    +R       + DI++                 ILG
Sbjct: 137 LLWIDGILTDVSQRRQAAEALRQSEQRFRGLSENAPDIIYTLSPDGRFTYVNRAWRRILG 196

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            A+  + G    ++ +   +  D++R +  +    ++        +   + +   + +  
Sbjct: 197 HAAEEVLGRY--FIEFAPPDSVDDYRRLFKAVRDGKKTLYGA-HPMLHKNGEVRHLAMSG 253

Query: 500 RPMSNSNGDILRYIGIANDIT----EQKKSLEGILCNAFQDNLTGIPN--------RQSF 547
            P  +  G +   +G+  D++     ++         A    L G+ N        R S 
Sbjct: 254 APNIDDMGRVTGMVGMLKDMSSQIQAERALRHSEASLARAQKLAGLGNWELKLSNSRLSC 313

Query: 548 LDRLTTILDLSATDDNLRPT--VMVIDIDKYKKINDVL-----------------GIAVG 588
            D +  I DL   D        V  +  D    +                          
Sbjct: 314 SDEVFNIYDLPRRDPASLFGEIVSCMHDDDIDYVTRCFEKAFLQDEAVSFEHRIKRHDGQ 373

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           + VL  +   + +     + ++ +   +   I     +  ++   A     ++   I   
Sbjct: 374 ERVLRQVASVLRD--DRGEPISMIGAVQ--DITGIRASEEQMRLLARVFENTVEGIIVTD 429

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MI 707
              +    +  F + T     ++E    A  A       G +  E ++            
Sbjct: 430 ADGVIEMVNAAFCAIT--GFDAAE----AVGARPSILSSGRHDAEFYQRMWRSLADQGHW 483

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + ++    +N E Y  +  I  + D+       +  +        +       A    + 
Sbjct: 484 QGEVWNRRKNGEAYPEWLTITAIKDKSDRTTHLVGVFHDITEAKRNEERITHQAYHDALT 543

Query: 768 KAINLFML--ERIARDIISWRDQANMPPIFI------LINIASKDLLDNELCEGMQALIS 819
              N  +           + R    +  +F+       IN +    + + L + +   ++
Sbjct: 544 GLPNRQLFNDRLAMAIAQAHRGGHGLALLFLDLDNFKNINDSLGHAVGDMLLQAVAQRLT 603

Query: 820 K 820
           +
Sbjct: 604 R 604



 Score = 68.4 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 389 HVLATGYFSQGIFSDGERQSLAV--------LGSGDIVWDWDI--VRDRVTTTPDIATIL 438
           H        + I    ++ + A            G  V+   +      +   P +A +L
Sbjct: 11  HCRDLASAQRRIAMLEDKLAQAAGDAYRGLFENLGVGVFRLTMAGQGRFLQANPALAALL 70

Query: 439 GL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G  ++  +       +  ++ + R+         V        +E  +   D +  W   
Sbjct: 71  GYDSAEELMSTP---VSQVYPDQRER--AFFARQVLQNGFVADFELPLCRKDGRTIWAEA 125

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                 ++ G +L   GI  D+++++++ E +  
Sbjct: 126 SAAAQRDAEGRLLWIDGILTDVSQRRQAAEALRQ 159


>gi|158334888|ref|YP_001516060.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158305129|gb|ABW26746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 705

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 175/621 (28%), Positives = 303/621 (48%), Gaps = 20/621 (3%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLV------LIVILIGFTVIQHVLATGYFSQG 399
           ++ +      + +T + D +I   A+  G        +I   +    I++ +        
Sbjct: 77  VVALGHRIPIILLTGQEDREIDLAAMTAGATDYLVKGMITSALLERSIRYAINHTRTLVA 136

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E+ +L    S D +WDW++   +V  +P  A I+G A  ++   I+ W   IH  
Sbjct: 137 LQEREEQYNLVAQASNDGLWDWNLQTHQVYYSPRWAAIIGQAEVTLQPSIQEWFDRIHPE 196

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D++ FR  L   +       + ++R+   D  + W+  R   +      ++R  G   D+
Sbjct: 197 DKERFRIDLRRHLRRETTAFECQYRMLHRDQSYRWVSSRGMAVFGPKNRVVRMAGSHTDL 256

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T            A  D+LTG+P+R  FLD+L   L       N    V+ +D D++K I
Sbjct: 257 TNHV---------ALYDHLTGLPSRALFLDQLHRTLTRVNRQTNYLFAVLFLDCDRFKVI 307

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A+GD +L+ + +R+   L+  D++ARL G+ F I+L +     +    A  + +
Sbjct: 308 NDSLGHAIGDQLLIEVAQRLTTALRPGDVIARLGGDEFAILLENIAGQDQAEQVASRLNR 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            +     L    + ++ASIG A  +     +  +L++A+ AMY AK  G +    F   +
Sbjct: 368 ELEKAFELQGHTVYISASIGIALNSDHSPQAENLLRDADNAMYRAKALGKSRYVVFEAAM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++ DL  A+ N E  L Y PII L   EIV LEALI+W HP+ G IS  EF
Sbjct: 428 RDRVQALLRVETDLRAAIANQEFQLYYQPIISLKTHEIVSLEALIRWQHPQRGLISPQEF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQA 816
           + +AEE  +I AI  ++LE   + +  W       PP+ I +N++ K      L + +Q+
Sbjct: 488 IPVAEETGLILAIGQWVLEESCQQLWQWHQTLTEIPPLSISVNLSRKQFSQASLGKQIQS 547

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++S+T  S   +KL  +E+++M N      L+ +LR +G+ L +DDFGT  S LS+L   
Sbjct: 548 ILSETGVSARHLKLEITETMIMENEVMVSELISQLRALGLQLQIDDFGTGYSSLSFLHNF 607

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P DT+K + S + G     ++  I+R++I +A N+  T IA+ +  +  ++ L +  CD 
Sbjct: 608 PLDTLKIDRSFIEGLVTDTEKSEIVRTMITLAHNLGMTAIAEGVETQAQLQWLQQHHCDC 667

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   ++ PL    + K L +
Sbjct: 668 VQGYLLSKPLSAAQMQKALMQ 688


>gi|226941473|ref|YP_002796547.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Laribacter hongkongensis HLHK9]
 gi|226716400|gb|ACO75538.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Laribacter hongkongensis HLHK9]
          Length = 839

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 160/611 (26%), Positives = 271/611 (44%), Gaps = 16/611 (2%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSG 415
                 +     LVG   ++  +    V +   A     + +    +   LA      + 
Sbjct: 233 LGITSENNQLTGLVGFADIMASIEHEYVHELQYALKERDEALNLSQQNLRLADKVFEATL 292

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--HINDRDNFRTILDSFVG 473
           + +   D      T  P    I G     + G     L           +    L     
Sbjct: 293 EGIIITDAEGIIETVNPAFTRITGWRREEVVGKNPRILSSSQQPPEFYRHLWQSLREH-- 350

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              G  Q E   R  D +F+   + I  +   +G    Y GI +DIT++K + E +   A
Sbjct: 351 ---GFWQGEVINRRKDGKFYTEHLTITGIRGPDGTFTHYAGIFSDITQRKLNEERLHYLA 407

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR   ++RL   L  +      R  +M +D+D++K IND LG AVGD +L 
Sbjct: 408 NHDPLTDLPNRTLLMERLGAALTRAHRQGK-RVALMFLDLDRFKFINDTLGHAVGDKLLQ 466

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++  R+   L+  D +ARL G+ F I+L    +   +A  A  +   +   + L   ++ 
Sbjct: 467 TVASRLTGSLRASDTVARLGGDEFNIVLEDIRDLRGVAQTAQKLIDRVQGMVTLDGHDVY 526

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDL 711
           VTAS+G A +     T   +  NA+ AMY AK RG N+ + F      S   R+ ++ +L
Sbjct: 527 VTASVGIAIYPDDGSTPEVLRMNADTAMYRAKERGKNNFQFFTADMNASTLARLRLESNL 586

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   E  L + P + L    I G+EAL++W   + G +S ++F+ IAEE  +I  I 
Sbjct: 587 HRALARQEFQLHFQPKVDLAHGHIYGMEALLRWRSHELGPVSPADFIPIAEESNLISTIG 646

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++LE+  R    W +   + P  + +N++SK +   ++   ++ ++  +      ++L 
Sbjct: 647 EWVLEQACRQARHWLN-LGLLPGTVAVNLSSKQMTQGDIVATVRRILEHSNLPGHYLELE 705

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ESV M N       L  L+ +G+ + +DDFGT  S LSYL  +P D +K + S +T  
Sbjct: 706 ITESVAMDNTGEMIRTLKNLKALGVRIAIDDFGTGYSSLSYLKQLPIDVLKIDRSFVTDL 765

Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            E     AI  +II M +++    +A+ +  E   + L   GC Y Q    + P+   ++
Sbjct: 766 HEDRDDAAIASAIISMGQSLNLQPVAEGVEREEHRQFLLDHGCQYGQGYLFSRPVPAATM 825

Query: 950 LKLLKERFPLV 960
            +LL E   L 
Sbjct: 826 EQLLLESQALS 836


>gi|220908927|ref|YP_002484238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865538|gb|ACL45877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 905

 Score =  576 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 167/679 (24%), Positives = 319/679 (46%), Gaps = 27/679 (3%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           V  ++F   + +      ++   ++ A +    +  I+L+     +   ++   +A+++ 
Sbjct: 245 VAQLSFKSASPLLGQLDAAYDDQLLQAVVVGGLMCLILLFALVVWVVLPLRSLSQALVVE 304

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            A     I  +         L   I++      L+L            +         + 
Sbjct: 305 DAS---LIHKLSTAKTEFGELAQLILKFFHQKELLL----------SEIAVRKSVETELR 351

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              ER  LA  G+ D +WDWD+ ++++  +    ++LG A   +   +  WL  IH  DR
Sbjct: 352 QSEERYVLAAAGANDGLWDWDLQQNQIYFSNRWKSMLGFAELEIPNQVEAWLERIHPEDR 411

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  +  L   +  +    +YE+R+R  D  + WM+ R   + +  G   R  G   D+T+
Sbjct: 412 EQMQHCLQEHLEGKSEHFEYEYRMRLKDGSYRWMLCRGLAVRDQVGQAYRIAGSQTDLTD 471

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K         A  D LT + NR   ++RL   + +          V+ +D+D++K +ND
Sbjct: 472 RK---------ALYDPLTHLANRSLLMERLRQAMQIRERYPARLFAVLFLDLDRFKWVND 522

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  +GD +L+ +  R+  L +  D +ARL G+ F ++L + +   +    A  ++ ++
Sbjct: 523 SLGHWIGDRLLIEIAARLKALSRSEDTVARLGGDEFVLLLANLSTPAEAIAVASRIQHTL 582

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
           A    +    I    SIG A     +    E+L+ A++AMY +K RGGN+V+ F  +   
Sbjct: 583 AQVFEIEGHTIYTGTSIGIAFADHLEQKGEELLQYADMAMYQSKSRGGNNVQVFDTAMRV 642

Query: 701 -RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             S+R+ ++ +L  A+E  +L L Y PI+ L    + G EAL++W HP+ G +S  +F+ 
Sbjct: 643 GTSNRLKLELELRQALEQQQLLLYYQPIVCLSTGTLQGFEALVRWQHPQAGLLSPVDFLP 702

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNELCEGMQALI 818
           +AEE  +I  I  ++L+     + SW+ Q     P+ I +N +++        + +Q ++
Sbjct: 703 LAEETGLILPIGTWILQTACSQMYSWQQQIQADVPLSISVNFSTRQFFHPNFLQQIQTIL 762

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+T  +P  +KL  +E  ++ + ER+  LL +L  +GI + LDDFGT  S LS+L   P 
Sbjct: 763 SETGLAPHCLKLELTEHTMIEDAERAARLLSQLNALGIDIQLDDFGTGFSSLSHLHEFPI 822

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K +         + +   I+++++ +A N+  +++A+ I  +   ++L  +GCDY Q
Sbjct: 823 HTLKIDRCFTQQALDSSRHKEIVQAVVTLAHNLGLSVVAEGIETKAQYEQLRNLGCDYGQ 882

Query: 937 DSHVASPLGFNSILKLLKE 955
                 PL        +  
Sbjct: 883 GYFFTPPLDLFQATAWMTA 901


>gi|89899894|ref|YP_522365.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89344631|gb|ABD68834.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 731

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 163/580 (28%), Positives = 252/580 (43%), Gaps = 9/580 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 V         +  + ER  LA+  +GD VWDW I       +  +  ILG   G
Sbjct: 145 VRTFTDVTDYVQAQATLQKNEERWKLALESTGDGVWDWHIQSGVEFYSKRLLEILGYDVG 204

Query: 444 SMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +H   R      IH +D         +           E RVR  D  + WM+ R   +
Sbjct: 205 DVHLQARGEFDKLIHPDDMAQLLRARQAHFDGLTSTYADEHRVRCKDGSWKWMLSRGMVI 264

Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             ++ G  LR IG   D+TE+KKS   I   A  D LTG+PNR    DR+   +  S  D
Sbjct: 265 SRDAQGLPLRMIGTHTDVTERKKSEALIWRQAHFDTLTGLPNRHMLRDRVAQEIKKSKRD 324

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             L+  V+ ID+D +K++ND LG   GD +LV   RRI + ++  D +AR+ G+ F +IL
Sbjct: 325 -GLQLAVLFIDLDHFKEVNDTLGHNSGDRLLVEAARRISDCVRESDTVARMGGDEFAVIL 383

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               ++  +      + +++     L   +  V+ASIG   +        ++ KNA+ A+
Sbjct: 384 TELLDASSLERILQKILRALECVFQLDGEQAFVSASIGVTMYPLDAGDIEDLFKNADQAL 443

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F         +RV +  DL   +   +  LVY PI+ L    +   E
Sbjct: 444 YVAKGAGRNRFSFFTPALQQAAQNRVRLANDLHAGLIGQQFRLVYQPIVELASGAVCKAE 503

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP  G IS  EF+ IAE   +I AI  ++ ++ AR + +WR     P   I +N
Sbjct: 504 ALIRWQHPTRGLISPVEFIPIAEASGLIVAIGEWVFQQAARQVQAWRTAL-DPDFQISVN 562

Query: 800 IASKDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            +          +      +       + I +  +E +++         L  L   GI +
Sbjct: 563 KSPVQFYQRGKTKTPWAQQLQAMGLPGNSIVVEITEGLLLDTSSSVADQLLDLHDAGIQV 622

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
           +LDDFGT  S LSYL     D VK + S +     +   +A+ ++II MA  +   +IA+
Sbjct: 623 SLDDFGTGYSSLSYLQRFDIDFVKIDQSFVRYLIPESTDLALCQAIIAMAHALGMKVIAE 682

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +        L   GCDY Q    + P+        +  +
Sbjct: 683 GVETAQQRDLLAAAGCDYGQGYLFSKPVSAPDFEAFMAAQ 722


>gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151280917|gb|ABR89327.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 699

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 153/574 (26%), Positives = 272/574 (47%), Gaps = 9/574 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           IQ V       + +     R       + + ++        +   P +A + G  +  ++
Sbjct: 130 IQDVTERKQADEALREAERRYRSIFENAIEGIYQSTPSDGYLAVNPALARMYGYDSPQAL 189

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +R+    ++++     R      +        +E RV   + +  W+    R + NS
Sbjct: 190 ISTLRDIDNQVYVD--PQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENARSVYNS 247

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G +L + G    ITE+K     I   A  D LTG+PNR    DR+   +  S     L 
Sbjct: 248 DGTLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLT 307

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +  +D+D++K IND LG  VGD++L    +R+   L+  D +AR  G+ F ++L  + 
Sbjct: 308 -AIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQP 366

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           N   I      +   ++ P    + E  +T SIG          +  +LKNA+ AMY AK
Sbjct: 367 NEEAITHTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAK 426

Query: 686 HRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N+ + F      S    ++    L  A+ N +  L Y P + L   +I+G EAL++
Sbjct: 427 ELGRNNFQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVR 486

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+    G +S + F+ +AEE  +I  +  ++L    R   +W+D    PPI I +N++ +
Sbjct: 487 WNSAHSGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDA-GYPPIPISVNLSPR 545

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   ++ E ++ ++++T      ++L  +ESV+  + E+S  LL +LR +G+ ++LDDF
Sbjct: 546 QLARGDIVEVVERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDF 605

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P DT+K + S +      +   AI+++II + +N+  T++A+ I  E
Sbjct: 606 GTGYSSLSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETE 665

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + L   GCD  Q   ++ P+   + + LL +
Sbjct: 666 DQFQFLLANGCDEGQGYLMSKPVPNKNFVDLLTQ 699



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             +     + G     +    R     I H +DR + R  +   V   R R   E+R+  
Sbjct: 43  FVSEGCFALTGYTEEDLLFNSRVSYDQITHPDDRRHVRDTILEAVRNNR-RFDIEYRIVR 101

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           AD     +  R   +S+ N       G   D+TE+K++ E
Sbjct: 102 ADGSIRHVWERGTNISHDNKAWDILEGFIQDVTERKQADE 141


>gi|254518217|ref|ZP_05130273.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
 gi|226911966|gb|EEH97167.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
          Length = 960

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 153/560 (27%), Positives = 277/560 (49%), Gaps = 6/560 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +  ER  LAV G+ DI+W++D        +     +LG    +    I  +   I  
Sbjct: 403 EVQASEERYKLAVDGANDIIWEYDFRNKEHYLSNKFEGLLGYTIYNSENLIDTFKKIILK 462

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D     ++ +  +  +      E RV    N   W+ IR + + +S  + ++  G  +D
Sbjct: 463 EDLGKVLSLFEEHLNRKSSYFYVECRVVDRFNNIKWVFIRGKALIDSENNPVKISGSISD 522

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+KK+ E I   AF D LTG+PN+  FLD++   L     ++ +     +IDID +K 
Sbjct: 523 ITERKKAEEKIETLAFYDQLTGLPNKHMFLDKIDDELLRGLKNEYIGVA-FLIDIDNFKN 581

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD+ L  + +   +LL   + + +L G+ F I+++  N   +  + A  + 
Sbjct: 582 INDTLGHDYGDEFLKCIAKEFIKLLDNDEFICKLDGDEFLILMLDVNGKAEAEEMANKIL 641

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +    P  + E+ I  + SIG +   +     SE+LKN+++AMY AK  G N    +R S
Sbjct: 642 ELFKNPFKVKEKNIFTSVSIGISIIPNDARNKSELLKNSDIAMYKAKENGKNRYLFYRES 701

Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +       + + L  A+  SE  L+Y P I + D +++G EAL++W    +GN+S  E
Sbjct: 702 MAKDIVRKSQLIDGLRNAICKSEFELLYQPQINMNDSKVIGAEALLRWRSNSFGNVSPIE 761

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I +I  ++L+        W D+  + P+ I +N++   L  +     ++ 
Sbjct: 762 FIPLAEQSELIISIGKWVLKNACIKNKEWIDK-GITPMTIAVNVSVIQLYQSNFLNTVRD 820

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ ++      +++  +ES+VM N E +  +L  ++ +G+ + LDDFGT  S LSYL  +
Sbjct: 821 ILDESGLPAEYLEIEITESIVMNNIEENLKVLNDIKDLGVKIALDDFGTGYSSLSYLRLL 880

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +      E    I+  II +A  +   ++A+ +  +     L +MGCD 
Sbjct: 881 PIDKLKLDKSFIDNIHISENDRVIVECIIKLAHEMNILVVAEGVEIKEQFDILYKMGCDR 940

Query: 935 IQDSHVASPLGFNSILKLLK 954
           IQ  + + P+  +    ++K
Sbjct: 941 IQGYYFSKPISPDKFELIMK 960


>gi|254414962|ref|ZP_05028725.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178109|gb|EDX73110.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1393

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 159/566 (28%), Positives = 277/566 (48%), Gaps = 7/566 (1%)

Query: 393  TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                   +    E+  L    +   +    +    +     +   LG  +  +      +
Sbjct: 824  RKQAEAALLKSEEQFRLTFELAPIGMAMTSLEGQFLKVNQALCDALGYTAQELL--ALTF 881

Query: 453  LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                H  +R    T   S +      LQ E R+ +   +    I+++  + ++ G  L Y
Sbjct: 882  TEISHPTERALHFTQHQSLLQGELSHLQTERRLISKSGRIVNAILKVVLVRDAQGQPLHY 941

Query: 513  IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            I    DI+++K+  E +L +AF D LTG+PNR  F+DRL   L  +    +    V+V+D
Sbjct: 942  ISQVVDISDRKRMEEQLLHDAFHDVLTGLPNRALFMDRLEYALRRAGQRWDYLCAVIVLD 1001

Query: 573  IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            +D++K IND LG  VGD +L ++  R+   L+  D LARL G+ F I+L    N+    D
Sbjct: 1002 LDRFKVINDSLGHLVGDRLLSAIAERLQGCLRPSDTLARLGGDEFTILLDDIPNTAAATD 1061

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A ++ +++    NL   E+  TASIG A        + ++L++A+ AM+ AK +G    
Sbjct: 1062 IAKSIHQTLESSFNLDGYEVFATASIGIALSGMGYHRAEDLLRDADTAMHRAKLQGTACY 1121

Query: 693  ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
              F   +S     ++ ++ +L  A+E  EL + Y PII L   +I G EAL++W HP+ G
Sbjct: 1122 VMFDTAMSGRALAQLRLETELRWAIERQELEVYYQPIISLGTGKITGFEALVRWQHPEQG 1181

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNE 809
             IS   F+ +AEE  +I  I  ++L      +  W+ Q    PP+ + +N++ K      
Sbjct: 1182 MISPGAFIPLAEETGLIIPIGQWVLRTSCYQLRQWQQQFPHYPPLTMSVNLSGKQFSQTN 1241

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E +  +I +T  +PS +KL  +ES +M + + +  LL RL+ + I L +DDFGT  S 
Sbjct: 1242 LIEQIAQIIQETEVNPSTLKLEITESGIMEHSDSASALLERLKALNIQLYIDDFGTGYSS 1301

Query: 870  LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LS L   P D +K + S ++   +  +   I+++I+ +A N+   ++A+ I   + + +L
Sbjct: 1302 LSRLHQFPIDALKIDRSFVSRMGDAGENGEIVQAIVTLAHNLGMDVVAEGIETNMQLAQL 1361

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLL 953
                C+Y Q    + PL   +  +L+
Sbjct: 1362 RGRRCEYGQGYFFSKPLNRQAAEQLM 1387



 Score =  107 bits (268), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATIL 438
           +     +   +       + +    E+    +    D+VW   +   + +   P    + 
Sbjct: 683 LTHFVGIQTDITKRKQAEEALRQSEEKLDSILRSLDDVVWSASLENQQFIYLNPATERVY 742

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G            W   IH +DR       +  +    G    E+RV   D +  W+  R
Sbjct: 743 GRPVSDFVDCPSLWQFVIHPDDRQRVERASNRMMHQ--GSKDLEYRVVRPDGEVRWLRDR 800

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527
            R + +  G  +R  GIA D+T++K++  
Sbjct: 801 ARLIYDHRGIAIRMDGIATDMTKRKQAEA 829



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 6/154 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATI 437
           +     + +VLA     Q   ++      A+  S + V   D        +   P   ++
Sbjct: 555 IHFLQAVANVLALAIGHQQSEANLYLMQRAIAASNNGVIITDPNQPDNPVIYVNPAFESM 614

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G  +  + G    +      +      T L + +  +R       +    D    W  +
Sbjct: 615 TGYTAKEVIGHNCRFWQ--EPDYNQAGVTKLATAIQEQREC-HVILQNYRKDGSTFWNEL 671

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
            + P+ + +G +  ++GI  DIT++K++ E +  
Sbjct: 672 YVSPVFDGDGYLTHFVGIQTDITKRKQAEEALRQ 705



 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 67/237 (28%), Gaps = 11/237 (4%)

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           +  +     L C+  +  +V  +    TL   ++     +    + G+    + +  W+ 
Sbjct: 23  WFYMLAGYGLICLDGFMDLVNRTFGLTTLNLNLIDTPIPMTLVYLLGFALLSIGLWQWLP 82

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L +       N               I     + Q +    + +  +    E+
Sbjct: 83  FVAKVKKLDILSPSY-SNSEEYYTCKLYDQGSAIAQSDELKQEIANCLHTNAELQQQEEQ 141

Query: 407 QSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF 464
                      V    +     V        + G+A+  + G    ++       D    
Sbjct: 142 FRAITQAFPVPVAIARVSDGTIVYGNSHANVLFGVATSELVGNSMPDFYEN--PADWQRL 199

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              LD     +      E  V   +    W+ + ++ ++ +       + + +DI++
Sbjct: 200 LARLD----QKGVVQNEELCVHTINGTPLWVTVSMQVLTLNQEKA--ILSVFHDISD 250


>gi|317130492|ref|YP_004096774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475440|gb|ADU32043.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 696

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 144/557 (25%), Positives = 268/557 (48%), Gaps = 10/557 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  S  +        + +  +P I  +LG     + GP   +   +H ++ D  R+
Sbjct: 146 FRSLLKNSSSVNCILSAEGNVMYRSPSIEKVLGYKPEELAGP---FFTIVHPDEHDYVRS 202

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             ++ +       + + R+R  +  +  + +      + +  I   I   +D+TE +++ 
Sbjct: 203 RFENLLENPDKPQKLDVRLRHKEGNWRTVHVIANNRMD-DPHIEGVIINYHDVTEMREAQ 261

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + I   A+ D LT +PNR+ F ++L   L  + T+   +  V+ IDID++K IND LG  
Sbjct: 262 QKIHHMAYHDYLTDLPNRRYFEEQLEAELQDAKTN-RSKLAVLFIDIDRFKFINDTLGHH 320

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD  L  +   +  L+   D++AR++G+ F I++        + + A ++ K +  PI 
Sbjct: 321 VGDKALKEIAEMLVSLVSEKDLIARMAGDEFMILVPHIEALDYVKELADSILKRMESPIV 380

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDR 704
               E+ VT SIG +++  S    S +LKNA+LAMY AK    N  E F           
Sbjct: 381 FDHYELFVTGSIGISTYPESGEDISVILKNADLAMYKAKETKENSFEFFTPEMEENSYKN 440

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ DL  A+ N+E  L Y P +    E++VG+EALI+W+HP  G +S   F+ IAE+ 
Sbjct: 441 FALQNDLRRAITNNEFELYYQPKVSASTEKVVGVEALIRWNHPTLGMVSPGHFIPIAEDT 500

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I  ++ + + + +  W +    PP+ + +N ++  +L   L   ++ L+ K    
Sbjct: 501 GLIVPIGEWVFDAVCKQVKRW-ENTGFPPLVVSLNFSAIQMLQKGLVTKVKNLLEKNQVE 559

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              I++  +ES+++ +       L  L+++GI + +DDFGT  S LSYL    F+T+K +
Sbjct: 560 GHWIEVEMTESLILEHDNDILNKLEGLKQLGIHIAIDDFGTGYSSLSYLKKYKFNTIKLD 619

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +          AI+  II ++  +   ++A+ +  +     L ++ CD +Q  + + 
Sbjct: 620 KSFINDIHTSADNQAIITFIIQLSNQLNMKVVAEGVEIKEQHDILQKLNCDELQGFYFSR 679

Query: 943 PLGFNSILKLLKERFPL 959
           P       +LL  +  L
Sbjct: 680 PKPVKEFEELLLNQQQL 696



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +    + ++  ++  + +      ++++G     +H    ++L  +H  D +  + 
Sbjct: 21  YKELLENFTEAIYVINLEGNFIDYNHGFSSLVGPGEKYLHT---SFLEIVHPEDIELAKK 77

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                +     +     R+ + +     ++    P+   +G ++  +GIA DIT
Sbjct: 78  GFVQTLKGEVLQ-DERLRIYSIEGNEKSIVTSKVPLFGKSGQLVGVLGIAKDIT 130


>gi|144901289|emb|CAM78153.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 833

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 156/594 (26%), Positives = 286/594 (48%), Gaps = 14/594 (2%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRD 426
            L+    ++  L    V +   A     + +    +   LA   +  S D +   +    
Sbjct: 243 GLLSFSDILASLQYEYVQRLDEALRERDEALLKSRKDLHLARKVIEASLDGIMICNPKGL 302

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                P  + + G     + G     L   +H      F   +   + + +G  Q E   
Sbjct: 303 IEFVNPAFSQLTGYQFDEVVGQNPAILQSGLHE---KAFYDRMWQSL-HVQGIWQGEIWN 358

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R    + +   + I  + + +G I +Y  + +DI+E+KK+ E I   A+ D LTG+PNR+
Sbjct: 359 RRKTGEVYPEWLTINVIRDEDGAITQYAAVFSDISERKKTEERIKNLAYFDVLTGLPNRR 418

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL   +  +    + +  +M +D+D +K+IND LG  +GD VL  +  R+   ++ 
Sbjct: 419 LFTDRLQVAIANAHRHGS-QLAIMFLDLDLFKRINDSLGHGIGDQVLCEVAVRLEHCVRE 477

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARL G+ F ++L   ++    A  A  +   +  P+ + E E+ VT S+G A +  
Sbjct: 478 GDTVARLGGDEFVVLLPELDHVEDAAKLADRVISHVKQPLRIDEHELYVTTSVGIAVYPD 537

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLV 723
             +T   ++KNA+ AMY AK  G N  + +   +++   +R+ ++  L  A+   E  LV
Sbjct: 538 DGLTDETLIKNADTAMYRAKDLGRNSYQLYTPAMNARSFERLAMESSLRHALSRHEFTLV 597

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y   I L+   + G+EAL +W HP+ G +S  EF+ +AE + +I  I  ++L+   R   
Sbjct: 598 YQGKIDLISGRMSGVEALARWRHPEMGLVSPVEFIPLAENMGLISEIGAWVLKAACRQCQ 657

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           SW +   +P + + +N+++    + ++ E ++  + ++   P  ++L  +ESV+M   E 
Sbjct: 658 SWHE-LGLPRVRMAVNVSTLQFREGDVVELVKQALDESGLPPQYLELEITESVLMQRVEE 716

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +  +L  LR +GI +++DDFGT  S LSYL  +P D +K + S +          AI+ +
Sbjct: 717 NAQVLQELRAMGIHISIDDFGTGYSSLSYLKRMPIDALKIDRSFVNDITEDGDGAAIVST 776

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           II +A N++   +A+ +  +     L   GCD IQ   V+ P+    ++ L   
Sbjct: 777 IINLAHNLKLRAVAEGVETQEQADFLRERGCDEIQGFLVSRPVSGEDLVSLFDR 830


>gi|292493169|ref|YP_003528608.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291581764|gb|ADE16221.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 948

 Score =  574 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 156/588 (26%), Positives = 283/588 (48%), Gaps = 12/588 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTP 432
           ++  +    +    +L   +  Q       R  L       + + V   D     V    
Sbjct: 356 LIEYLDPLLSTCGSILDAYHNDQRRRDAESRLRLTAKVFESTIEGVIIVDARAYIVDVNK 415

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
               I G+    + G   + L      +  +F+ I  S      G+ Q E   +  + + 
Sbjct: 416 AFTHITGMVRQEIIGQHLSVL-RAKQEEPISFQKIWRSIKS--TGQWQGELWSQRKNGET 472

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           + + + +  + NS  +I  Y+ + +DIT +K++ + +   A  D LTG+PNR  FLDRL 
Sbjct: 473 YPVWMTVSSVRNSKEEITHYVAVFSDITIRKQTEQRLYYLAHHDTLTGLPNRTLFLDRLK 532

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             ++ +    N R  V+ ID+D++K IND LG  +GD +L  + +R+   ++  D +ARL
Sbjct: 533 HAINHAHRR-NYRVAVLFIDLDRFKFINDTLGHRIGDILLKQVAKRMQANIRAEDTIARL 591

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F +I+ S  ++  I   A  +  +   P N+  +E+ V+ASIG + + +    +  
Sbjct: 592 GGDEFTVIIESFTDTSVIPLIARKIINACEKPFNINGKELFVSASIGISLYPTDGYDAGM 651

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRL 730
           +L++A+ AMY AK +G N  + F      +    +     L  A+   E  L Y PI+ +
Sbjct: 652 LLQHADAAMYRAKEKGKNSYQFFTTEINAAAAEHLALENRLRKAIAQGEFQLYYQPIMDM 711

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               IV +EALI+W +P+ G I+  +F+ +AEE  +I  I  ++L+        W  +  
Sbjct: 712 ESGAIVSVEALIRWVNPELGLINPDKFIPLAEETGLIIPIGEWVLQTACAQAKIWNQENT 771

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ I IN++++     +  E +  ++ KT   P+R++L  +ES++M N E S   L  
Sbjct: 772 Y-PLRIAINLSARQFQQIDFLERILEILKKTDLLPNRLELELTESMIMDNMEASLETLNA 830

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+K+G  ++LDDFGT  S L+YL   P DTVK + S +          AI  ++  MA +
Sbjct: 831 LKKMGCQISLDDFGTGYSSLAYLKRFPIDTVKIDHSFVRDISTDPDDAAITTAVTTMAHS 890

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +   ++A+ +     ++ L  +G + +Q   ++ P    +  +LL+ER
Sbjct: 891 LRRKVVAEGVETREQLEFLDNIGVNGVQGYFISYPAPAENFTRLLQER 938


>gi|307824193|ref|ZP_07654419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
 gi|307734573|gb|EFO05424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacter tundripaludum SV96]
          Length = 856

 Score =  574 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 262/563 (46%), Gaps = 10/563 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R       + + +   D  +  V        I G ++    G   + L     
Sbjct: 298 KLAEQEQRIFATAFQTQEGIIVTDANQIIVRVNQAFTIITGYSTEEAIGNKPSMLKSGRH 357

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  + F   +   + +  G  Q E   R  D + +   + I  + +S+     Y+G  +D
Sbjct: 358 D--NFFYHAMHKTL-HSEGYWQGEIMDRHKDGRIYPKWLTITAVKDSDDKTTHYVGNFSD 414

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+K++ E I   A  D LTG+PNR    D L   L L+   +     +M +D+D +K 
Sbjct: 415 ITERKRAEEHIHYLANFDWLTGLPNRTQLNDHLKYALSLAKRSNG-HLALMFLDLDHFKD 473

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG ++GD +L+ L +R+   L+  D + RL G+ F ++L    +++  A  A  + 
Sbjct: 474 INDSLGHSIGDALLIKLAKRLRAALREEDTVTRLGGDEFILLLPGV-DAIGAAHVAQKLL 532

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +IA    +   ++ +TASIG A +         + K+A+ AMY AK  G      F   
Sbjct: 533 DTIAESYRIEHYDLILTASIGIALYPEDGEDLEALSKSADTAMYRAKQEGRQCYRFFTQE 592

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + +   L  A++ S+L + Y P I + D  I+G EAL++W HP+ G +S +E
Sbjct: 593 MQARSARNLQLVNALRHALDRSQLQVHYQPQISMRDGAIIGAEALLRWQHPELGMVSPAE 652

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  I  ++L    +   +W ++    P+ + +N+++      +L E +  
Sbjct: 653 FIPVAEGSGLILPIGEWVLRCAVQQAKAWVNEGFG-PLIMAVNLSAVQFRHPDLPELVTR 711

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +    P  ++L  +E V M NP+ +  ++  L++ G+ +++DDFGT  S LSYL   
Sbjct: 712 ILDEEGLPPEYLELELTEGVAMHNPQSAIAVMNNLQERGVRMSIDDFGTGYSSLSYLKEF 771

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K + S +       +   I+ +II +AK++    IA+ +  E     L   GCD 
Sbjct: 772 KVYKLKIDQSFVRDISTDPEDKVIVSAIINLAKSLGLKTIAEGVETEGQQAFLREQGCDE 831

Query: 935 IQDSHVASPLGFNSILKLLKERF 957
           +Q    + P+       LLK+ F
Sbjct: 832 MQGYLFSKPVSAEQFDALLKQGF 854



 Score = 91.2 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 64/157 (40%), Gaps = 5/157 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +     +++      S+ +  + +R   A L SG  V++     D +  +P++ T  G  
Sbjct: 154 MEIERKRNLEEKERVSEVLRLNEDRLYQATLVSGTGVFEQTYGNDSIYCSPELRTHFGWD 213

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500
           +  +    + +   I+ +DR      +         G L  ++R+   + +  W+  R +
Sbjct: 214 ADELVTT-QTFTASIYPDDRKRVIEAVRHAQNSSGNGLLDIDYRIFCRNGEVGWLATRSQ 272

Query: 501 PMSNSNGDILRY---IGIANDITEQKKSLEGILCNAF 534
               ++GD+ R    +G   DIT++K + +     A 
Sbjct: 273 TFFETDGDVSRAVRTVGAVRDITKKKLAEQEQRIFAT 309


>gi|189423772|ref|YP_001950949.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420031|gb|ACD94429.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 703

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 165/665 (24%), Positives = 309/665 (46%), Gaps = 15/665 (2%)

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
                +      ++  +    + +    FI     +G +   +++            L +
Sbjct: 44  AAALIWLASHPVNLLLLDYTLVDMTGEAFIAAMAEQGSQVPFVVVTGR-----DDSNLAV 98

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQSLAVLGSG 415
            + K+  +D +         L V++         +    +  Q +     R + A   + 
Sbjct: 99  QMIKQGASDFVVKDTALLDRLPVVVSRTLQEAATMQRLCHAEQALRQSELRLARAQRIAR 158

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474
              W+WD+  + +  +P++ +ILG    +       W    I+ +D    R  L + +  
Sbjct: 159 IGSWEWDLQSNGLYFSPELFSILGYDGTAPPDVSLEWFYRQINPSDTCFVRKALSAAIES 218

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R  L   FR+     +   +  +     +S+G     +G   D+T++ ++ + I   A 
Sbjct: 219 GRN-LNQTFRIVTCSGEEIVVASQAELEYDSDGRPELLVGTLLDVTDRTRAEQEIHHLAN 277

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR    DRL   +  +A        V+ +D+D++K +N++LG   GD +L +
Sbjct: 278 YDTLTGLPNRNLLHDRLQQAIVQAARVQG-SVGVLFLDLDRFKGVNELLGHRAGDQLLRT 336

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+   ++  D LAR  G+ F IIL   ++   I+  A  +   I+ P  + ERE+ +
Sbjct: 337 VAERLRVCVRESDTLARAGGDEFVIILSVVSDEDGISSAASKILAIISEPFVIEERELYL 396

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           TASIG A + +       +LK+A+LAMY AK    N+ + F    +    +R++++  L 
Sbjct: 397 TASIGVAVYPTDGADVQSLLKHADLAMYQAKDMDRNNFQFFSSDLNVKVMERMVLESSLR 456

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  E  L+Y P + ++   +VG EAL++W HP  G IS  +F+ +AEE  +I +I  
Sbjct: 457 RALERDEFQLLYQPQVDVITGSVVGFEALLRWHHPDLGTISPEKFIPLAEETGLILSIGE 516

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R    W+D     P+ + +N++ +      L E + A++ +T + P  ++L  
Sbjct: 517 WVLRTACRQAKIWQDAGLR-PVRMAVNLSGRQFRMK-LDEIVAAILLETGFDPRWLELEL 574

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +ES++M N   +  LL  L  +G SL++DDFGT  S L+YL + P + +K + S +    
Sbjct: 575 TESILMRNASDNIELLQALTAMGCSLSIDDFGTGYSSLAYLKHFPLERLKIDRSFVRDVT 634

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +     AI + II MA  ++  + A+ +     ++ L R GC  +Q    + P+   S  
Sbjct: 635 TNPDDRAIAKIIIDMAHTLKMEVTAEGVEEREQLELLKRYGCREMQGFFFSRPVPAASAE 694

Query: 951 KLLKE 955
           KLL++
Sbjct: 695 KLLRK 699


>gi|296134149|ref|YP_003641396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296032727|gb|ADG83495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 692

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 279/586 (47%), Gaps = 20/586 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            I+ G    + +       + +    ER       +   +   D   + +         L
Sbjct: 105 AIIGGIETFEDITERKKTEEALAESEERYRTLFERTASPILVTDTKGNYIDCNEAACQFL 164

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            L+   +    +R+ L        +              G ++ E+ ++        M +
Sbjct: 165 ELSREELLTLNVRDLL----PKGWEKRPQAHKILWKTE-GVIEAEYLIKNR---IKIMEL 216

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            + P     G  +   G+  DITE+K++ E +   A+ D+LTG+PNR  F ++LT  +  
Sbjct: 217 TVTPAIW-QGKAV-VFGVGKDITERKQAEEKMRRMAYYDSLTGLPNRAFFKEKLTAAIIK 274

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S      +  ++ +D+D++K +ND++G  VGD +L  + +R+ + +    ++ARLSG+ F
Sbjct: 275 S-RSKKQKLAILFLDLDRFKTVNDIMGHDVGDQLLKDVAKRLKKRVGKGRVVARLSGDEF 333

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L + +    +  FA  + +++  P  +  R   VT SIG   +  +   +  +LKNA
Sbjct: 334 IILLPNVSRIEDVRKFAEDVCENLRKPFTIAGRNFHVTTSIGITVFPDNGEDAKTLLKNA 393

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK +GGN  E +  +        + ++  L  A+E  E  L Y P +  M  EI
Sbjct: 394 DIAMYKAKEQGGNSYEVYTFAMNEMAMAKLELENSLRAALERHEFTLFYQPQVHGMTGEI 453

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EALI+W HP+ G IS +EF+ +AEE  +I  I  ++L         W+ Q    PI 
Sbjct: 454 VGMEALIRWKHPEKGLISPAEFIPVAEETGLIVPIGEWVLYTACMQNKYWQ-QKGYAPIR 512

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++++      L   +  ++ +T   P+ ++L  +ESV M N E +  L+ +L+ +G
Sbjct: 513 VAVNLSARQFQQRNLVSMIARVLKQTGLDPNCLELEITESVAMQNLENTIKLVKQLKDLG 572

Query: 856 ISLTLDDFGTKCSLLSYLGYIPF-DTVKFNGSLMTGSTEK----RIAILRSIIPMAKNIE 910
           + +++DDFGT  + LSYL   P  DT+K + S +   ++       A++ ++I +AKN++
Sbjct: 573 VHISIDDFGTGYASLSYLKLFPPIDTLKIDRSFVRDISQNPRNASDALVATMIVLAKNLK 632

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++A+ +  E  +K L    CD  Q      P+      + L  +
Sbjct: 633 LKVVAEGVENEKQLKFLLERQCDEFQGFFFGKPVPAKEFEQFLTRQ 678



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 6/114 (5%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
               ++  +  R   +     A + G  +  + G       Y          +    F  
Sbjct: 17  IPSAIFTVNTNRIITSINNKAANLFGYPAEEIVGRSCTEFCY------GPCCSHCRLFDD 70

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                   E  ++        ++  I  + ++ G I+  I    DITE+KK+ E
Sbjct: 71  GVPKPATGEGIIKTRSGLVRIILKNIDLLRDNEGAIIGGIETFEDITERKKTEE 124


>gi|332528694|ref|ZP_08404671.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332041760|gb|EGI78109.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 907

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 173/747 (23%), Positives = 323/747 (43%), Gaps = 22/747 (2%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           VL       G L  ++ +                +    +   M L  +   + +     
Sbjct: 151 VLTDSQTGGGTLRLILPILDAWGRPRHFVVAELSADYFNMLQRMALETDDTWSSLSMADG 210

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           + +  +A     +              + S  +   + +   G          + +  L+
Sbjct: 211 TLLGLLASDPRTAQAAATWRLDTTASAVRSSPVPGVHIVDVAGQPRRLLVRRTVGSRELM 270

Query: 348 FIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFS--------- 397
               + L ++      +   Q  A V  + L V+++    +  +                
Sbjct: 271 LDQPLVLTLSRELSPLDGPWQRLATVYAITLAVLILAGCGMLRLAQIRRARWDGLMHAQD 330

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                  +R  LA+ G+   +W+  I  D +      A I G   G +     +W   +H
Sbjct: 331 HERIEHLQRMELALEGAVLGLWELSIPDDHMRVDARAAAIQGYQFGEIEARGFDWRADLH 390

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIA 516
            +D D F       +G    + + E R+R  D  + W+    R +  +++G  L  +G  
Sbjct: 391 PDDADFFLQQFAQHLGGNTSKFEVECRLRRKDGGWVWVQCLGRVIQRDASGQPLHVLGTR 450

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+ +K+    I   AF D+LTG+PNR+   +RL   L  S     +   +++ID+D +
Sbjct: 451 MDISARKQHETEIERLAFYDSLTGLPNRRLLHERLDRGLVASEERGQI-GAIVLIDLDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIA 631
           K +ND LG  +GD +LVS++ R+ ++++  D +ARL G+ F ++L S             
Sbjct: 510 KSLNDTLGHDLGDQLLVSVSARLRQIVRAQDTVARLGGDEFVLLLESLGGSWAEARRNAE 569

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + + ++ P +L +R+I  T S+G   +        ++L+ A++AMY AK +G N 
Sbjct: 570 TLGRNLLQRLSHPYHLADRQIYSTPSLGITLFAGGSSKLDDLLRQADMAMYEAKAQGRNT 629

Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F             ++ DL  A+E  EL L Y PI+      I+G+E+L++W HP+ 
Sbjct: 630 LSFFEPEMQAHTSANAQLQSDLHRALERCELLLHYQPILD-RKRRIIGVESLVRWQHPEM 688

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S + F+ +AE+  +I  +  ++LE+  R +++W   A+   +F  +NI+++ L   +
Sbjct: 689 GMVSPARFIPVAEQCGLILPLGDWVLEQTCRQLVAWAAHASTAELFAAVNISARQLSQPD 748

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +   + +T  SPSR+KL  +ES+ + + E     +  L++ GI  +LDDFGT  S 
Sbjct: 749 FVVKVLETVRRTGASPSRLKLELTESMFLLDVEGVIEKMAALKRHGIGFSLDDFGTGYSS 808

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P D +K + S ++         AI  +II +A N+   +IA+ +  +   + L
Sbjct: 809 LCYLQRLPLDRLKIDKSFVSDLPDNANSAAIGAAIIGLAHNLGLQVIAEGVENQEQWQFL 868

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954
               CD  Q    A PL    + + L 
Sbjct: 869 LEGQCDAFQGYLFAPPLPVEELDRRLS 895


>gi|77918947|ref|YP_356762.1| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus DSM
            2380]
 gi|77545030|gb|ABA88592.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pelobacter carbinolicus DSM 2380]
          Length = 1274

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 150/557 (26%), Positives = 266/557 (47%), Gaps = 13/557 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHIN 459
            S  ++ S A+  S   V   D         P    + G     +       L    +  +
Sbjct: 684  SQLKKLSRAIEQSPVSVVITDPEGRIEYVNPKFTQLTGYTLEEVIAQNPRILKSGNLLPS 743

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
              D+    +             E   +  D    W    I P+ + +G I+ +IG+  DI
Sbjct: 744  VYDSLWKTI-----TSGKEWYGELENKRKDGSIFWESASISPLFDESGKIINFIGVKEDI 798

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K + + +   A  D LTG+ NR    D L   L  S     L   V+++D+D++K I
Sbjct: 799  TQRKLNEKRLEYMATHDGLTGLANRTLLYDHLEIALHQSQRSKKL-VAVILLDLDRFKVI 857

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG  VGD VL ++ +R+ + ++  D +ARL G+ F ++L    ++      A  + +
Sbjct: 858  NDSLGHLVGDQVLKAVGQRLKQYVRSTDTVARLGGDEFVVLLTDVRDTTAAGKIAHNLLR 917

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
             +  P  L  RE+ V+AS G     +  +  + +L+NA++AMY AK  G G +  S  ++
Sbjct: 918  KLNEPFFLHGRELYVSASFGICLSETDNVDGTILLRNADIAMYKAKAEGCGLYFYSHEMN 977

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  + ++  L  A+E +E  L Y P +      I+G EAL++W HP+ G I  SEF+
Sbjct: 978  EHLIKTLEMENSLRQALEKNEFQLYYQPKVEHATGRIIGCEALLRWRHPQRGMIPPSEFI 1037

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQAL 817
             +AEE  +I  I  ++L    R    W +   +PP+ + +NI+++       L + +++ 
Sbjct: 1038 PLAEETGLIVQIGHWVLAEACRQSKIW-ETEGLPPLTMAVNISARQFYQGENLIQAVKST 1096

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + ++   PS+++L  +ES+VM +   +   + +++++G+SL+LDDFGT  S L+YL   P
Sbjct: 1097 LERSQLVPSQLELELTESMVMKDAVNAERTMRKIKQLGVSLSLDDFGTGYSSLNYLRSFP 1156

Query: 878  FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D++K + S +          AIL SII +A  +    +A+ +     +  +   GC+YI
Sbjct: 1157 VDSLKIDRSFILDIASDASSAAILNSIIAIAHTLGLQTVAEGVENNDQLALVANCGCNYI 1216

Query: 936  QDSHVASPLGFNSILKL 952
            Q    + PL     + L
Sbjct: 1217 QGYLFSRPLPPEDFVAL 1233



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 18/174 (10%)

Query: 406 RQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           + +L V  S  +++ W        V+ + +I+   G A   +     ++   +H  D D 
Sbjct: 141 QANLIVDNSPAVLFHWKAEDGWPIVSVSKNISQ-FGYAQEELMSGDFSYATLVHPKDLDR 199

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L + +       Q E+R+     +  W+  R     ++ G +  Y G   DI E+K
Sbjct: 200 LEEELQAQINRGERIFQTEYRIITKQKEVRWVDERTFVERDAAGKVSHYQGFIIDIDERK 259

Query: 524 K------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +      +   +L  A  + L  +         L   LD +      R      
Sbjct: 260 RTELVMAARMRLLQLATNNTLAQL---------LEATLDEAEALTESRMGFYHF 304



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 6/150 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSM 445
           ++ +       Q +  + +        +  +++++++  ++     P +  I G      
Sbjct: 546 LEDITEQLETQQTLQKNKKNIQQLAENTEAVLYEYNLSDNKWTYMAPQVERIFGYKPEDW 605

Query: 446 HGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
               + WL  +H  D     R  L          +  E+R    D    W+   IR  S+
Sbjct: 606 IDN-QFWLDRVHEADWGKASREELSKLNQQEAHSI--EYRFYKKDGSIVWVRDIIRIESD 662

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   +    G+  DIT+ K+S   +   + 
Sbjct: 663 AENKLC-LHGLLIDITDSKQSESQLKKLSR 691



 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 13/178 (7%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            +A+    +              ++    +T ++  L      + +    ++    V  +
Sbjct: 388 IVAVLGMANKAEAYTQRDAEAASLLADFAWTTLERKLT----EESLQVSEQKYRHIVDHA 443

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNWLPYI---HINDRDNFRTILD 469
              +         ++  P +A IL    +   +    R+ L  +   +  DR+    ++D
Sbjct: 444 PFGITRTTRDGKLISANPAMANILKYDSSQELLETIGRSSLQEVIFSNPADRE---DMVD 500

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +      L     +R  D       +  R +S        Y     DITEQ ++ +
Sbjct: 501 KVIISNSWCLHN-LSLRCKDGSLATCRVHSRRLSEKGSQNWEYENFLEDITEQLETQQ 557


>gi|220933673|ref|YP_002512572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994983|gb|ACL71585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 685

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 159/679 (23%), Positives = 274/679 (40%), Gaps = 17/679 (2%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            IT  G   +A L  +S +            +    L  +           +R +     
Sbjct: 9   RITLIGGVLLAALTLVSGFAVYAVMQRQLEAVLVNSLQSSL--------HSDRRLFETEI 60

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
              +             +    + +          +  +   +++    T   +  +   
Sbjct: 61  RGSVVNALTVSTRPFVIQNLARLREAPEDASAAHSLQRLVRRLVKSQQQTAEANARLRDL 120

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER   A+  +G  VWD D+   ++  +     +LG     +      W   +H +D   
Sbjct: 121 EERWRFALDSAGAGVWDLDLSAGKILLSVRCKHMLGYEEHEIGASAEEWQALVHRDDAPA 180

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522
                   V        +E R R  D  + W+  R      + NG   R IG   DI+E+
Sbjct: 181 LIAACQRLVDGEVQSFTHEHRKRCKDGSWKWVQARGMVAARDENGAPTRLIGTYIDISER 240

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K++ E I   A  D LT +PNR+ FLDRL   +             ++ID+D++K++ND 
Sbjct: 241 KRAEEIIQQQANFDPLTKLPNRRLFLDRLDQQIAKCQRTGAALAL-LLIDLDEFKEVNDT 299

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L    RRI   ++  D +ARL G+ F +IL        + + A  +   +A
Sbjct: 300 LGHDVGDVLLQEAARRISGCIRDTDTVARLGGDEFTVILSDLTGKAHVEEIAQKLISRVA 359

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
            P  L E    ++ASIG   +        E++K+A+ AMY AK  G N    F  +    
Sbjct: 360 EPYYLREGVAHISASIGITLYPGDAEDMGELMKHADQAMYSAKRLGRNRFCYFTHALQEA 419

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +  +L  AV   +    + PI+ L    I   EAL++W HP+ G +  +EF+ +
Sbjct: 420 AQKRLRLSRELRQAVNQGQFEAHFQPIVELASGRIQKAEALLRWHHPERGLVGPAEFIPL 479

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL--CEGMQALI 818
           AE+  +I+ +  ++     R    WRD+     I + +N++            E     +
Sbjct: 480 AEDTGLIEGVGDWVFREAVRRARVWRDRFG-TDIQVSVNMSPLQFRSEGAERVESWLYHL 538

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +      +I +  +E++++   +     L R R  GI + +DDFGT    LSYL   P 
Sbjct: 539 EEMGVRGEQIVIEITENLLLHAHDEVTRQLFRFRDAGIQIAIDDFGTGYCTLSYLKQFPI 598

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +         +A+ ++II MA  +   +IA+ +  E   + L+  GCD+ Q
Sbjct: 599 DYLKIDRSFVRNLENDPNDVALSKAIIVMAHELGLKVIAEGVETEGQRRLLSDAGCDFAQ 658

Query: 937 DSHVASPLGFNSILKLLKE 955
               A  L       LL +
Sbjct: 659 GYLFARALPAEDFEDLLND 677


>gi|186686857|ref|YP_001870050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Nostoc punctiforme PCC 73102]
 gi|186469209|gb|ACC85009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Nostoc punctiforme PCC 73102]
          Length = 1043

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 160/584 (27%), Positives = 286/584 (48%), Gaps = 8/584 (1%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442
              ++ ++         +    +R    +    D++W       + +   P    + G + 
Sbjct: 461  LGMVTNITDRKLAEAALQESKQRLDGILCSLEDVIWSISADTFETLYLNPAALKVYGYSV 520

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                     W   IH  D+      +         + + E+R+   D Q  W++ R   +
Sbjct: 521  SEFFENSNLWFEVIHPEDQQQVHAAIQPLF--LTEKQELEYRIVRPDGQVRWLLNRSHLI 578

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             N++G  +R  GIA DITE+K   E ++ NAF D LTG+PNR  F+DRL   +     + 
Sbjct: 579  YNASGLPIRIDGIATDITERKLLEEKLVHNAFYDALTGLPNRILFIDRLEQAIAQMKHNP 638

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +    V+ +D+D++K +ND LG  VGD +LV+L +R+ + L+  D +ARL G+ F I+L 
Sbjct: 639  DDLFAVLFLDLDRFKVVNDSLGHLVGDQLLVTLAQRLQQCLQPDDTVARLGGDEFTILLS 698

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                     D A  + +++  P NL   E+ +TASIG A  T+  +  +++L++A+ A+Y
Sbjct: 699  HIQTIEDATDIAKHIHQALKPPFNLCGYEVFMTASIGIALGTNKYVQPADLLRDADTALY 758

Query: 683  HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK +       F   +     + + ++ DL  AVE  EL + Y PII +   +I G EA
Sbjct: 759  RAKEQSQAGHIVFDTTMYDRAVELLQLETDLRWAVERQELCIFYQPIICIKTGKITGFEA 818

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILIN 799
            L++W HP+ G IS +EF+ +AEE  +I  I  ++L    + +  W+ Q     P+ + +N
Sbjct: 819  LVRWQHPERGLISPTEFIPVAEETGLIIPIGQWVLTESCKQLRQWQLQFPAIKPLTLNVN 878

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++ K      L E +  ++  T  S S +KL  +E+ ++ +P+++  +L +L+  G+ L 
Sbjct: 879  LSGKQFSQPHLIEQISQILQDTGLSSSNLKLEITETAIIASPQKATSILKQLKAFGLQLC 938

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S L+YL   P D +K + S +          AI+R+I+ +A N+  +++A+ 
Sbjct: 939  IDDFGTGYSSLAYLHNFPIDVLKIDRSFVNRIDSDTEQFAIVRAIVTLADNLGMSVVAEG 998

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +     + +L  + C   Q    + PL       LL      ++
Sbjct: 999  VETINQLAQLQLLQCQQAQGYLFSKPLDQEQARNLLASGQSFLR 1042



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 4/133 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +    E+    V  + + +W  D           +AT+LG     M G       
Sbjct: 347 QALEALGKQEEQYRRIVQTATEGIWLLDKDNCTTFVNQQMATMLGYTIEEMLG--ATLFS 404

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           ++     +   + L       +    ++F+ R  D    W II   P+ +  G+    +G
Sbjct: 405 FMDSEGLEIANSCLSRRYQGIQE--AHDFKFRCQDGSDLWAIISCAPLLDDQGNYAGALG 462

Query: 515 IANDITEQKKSLE 527
           +  +IT++K +  
Sbjct: 463 MVTNITDRKLAEA 475



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 8/143 (5%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSM 445
             +      Q    D      A+  S + +   D        +   P    I G  +  +
Sbjct: 212 QSVEKISPLQEPEVDLHLMERAIAASSNGIILTDPNQPDNPIIYVNPAFELITGYCASEV 271

Query: 446 HGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G    +L     ND +      L S +  +R       R    DN   W  + + P+ +
Sbjct: 272 IGRNCRFLQG---NDLEQVALQELRSAIQEQREC-HVILRNYRKDNFLFWNELYLAPVFD 327

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
           ++G +  +IGI  DIT   ++LE
Sbjct: 328 NSGYLTNFIGIQTDITHHLQALE 350


>gi|119776759|ref|YP_929499.1| signal transduction protein [Shewanella amazonensis SB2B]
 gi|119769259|gb|ABM01830.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 709

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 145/580 (25%), Positives = 264/580 (45%), Gaps = 12/580 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L   T    + A  +  + + +  ER +L + G+ D  WDWD+ +  V  +P    ++G 
Sbjct: 115 LQVITCFTDISALKHAEEALKASEERLNLMLQGANDAAWDWDLRQHTVYYSPRWWQMIGR 174

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRI 499
               +      W+  +H +D       ++             EFR++     +  ++ R 
Sbjct: 175 EPDELEPTEDLWVKLLHPDDYQKVMDKMNGLFDRSGPSSFDTEFRLQTKSGSYLPVLCRG 234

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +  ++G  LR  G   D+TE+K+S   I   A+ D LTG+ NR   ++RL   + L  
Sbjct: 235 VILRGADGTPLRMSGTNMDLTERKESEARIYQLAYYDVLTGLANRTLLMERLKAAIALCE 294

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               +   +++ID+D +K +ND +G  VGD +L  +  R+ + ++  +++ARL G+ F I
Sbjct: 295 RSKQI-GALLIIDLDNFKILNDTMGHDVGDALLKMVADRLLQAVRRCELVARLGGDEFVI 353

Query: 620 ILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++ +     +            +R  +  P  L  +++  + SIG A +   +    E+L
Sbjct: 354 VMENLGIDERGAALKAKSVGQKVRGLLNDPFMLAGKQLRTSPSIGIALFAEGRPGLEELL 413

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K A++AMY AK  G N +  F  +      +RV ++ DL   V  +E  L   P +    
Sbjct: 414 KQADVAMYQAKEAGKNALRFFDPAMQAAVEERVALENDLRNGVLENEFRLFCQPQVD-AC 472

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G E LI+W HP  G +  ++F+ +AE+  +I  I  ++L +    ++ W    ++ 
Sbjct: 473 GRLCGGEVLIRWQHPVRGLVMPNQFIPLAEQTDLIIPIGEWVLRKTCETLVEWESHPSLA 532

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I + +N++   + D+   E + A+I     +P+RI L  +ES++  N E   L +  LR
Sbjct: 533 QISLSVNVSVNQVRDHNFVERVLAIIDDCGANPARIMLELTESLMAENVEEIILKMNALR 592

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
             G+  ++DDFGT  S LSYL   P   +K + S +      +    I   II +AK + 
Sbjct: 593 VRGVRFSVDDFGTGYSSLSYLKRFPLSELKIDQSFVREIALNQHDAVITEIIITLAKKLG 652

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             ++A+ +  E  +  L    C Y Q      P       
Sbjct: 653 LGVLAEGVETEDQLNFLLAHDCSYFQGYLFGKPCAIELFA 692



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR---NWLPYIHINDRDN 463
            S  +      +       + +      + ILGL++  M G +     W      +    
Sbjct: 7   FSDLIEYIPVGIVVHGPQSEILYANDRASEILGLSTAQMLGKVDIDPAWRFDF-PDGTPM 65

Query: 464 FRTI--LDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                 ++  +  + G      +V         W++    P    +G++L+ I    DI+
Sbjct: 66  SLADYPVNRVLKCKEGVWGMILKVHRPVAKDVAWVLCNAFPSIGEDGEVLQVITCFTDIS 125

Query: 521 EQKKSLE 527
             K + E
Sbjct: 126 ALKHAEE 132


>gi|326794109|ref|YP_004311929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326544873|gb|ADZ90093.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 718

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 151/558 (27%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +     R + A+  +   VW+WDI +D    TP   T+LG +     G  +  L  IH 
Sbjct: 152 ELVEADARMNEALKVTNIGVWEWDIEKDVWFATPSYFTMLGYSPIDGLGDRQKELAKIHP 211

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIAN 517
           +DR++    + S +   R    Y+ R+  A+  + W+ +R      N +G   R +G+  
Sbjct: 212 DDREDVLNTIKSVLNGARTSYHYQCRICHANGAYRWIGVRCTVTEMNDDGKPSRMLGVRI 271

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI   KK+ + +   A  D+LT +PNR S  D     +D        R  ++ +D+D++K
Sbjct: 272 DIDALKKTQQQVEWLAKHDSLTQLPNRASLFDFFQKCID----HGTDRMALLFVDLDRFK 327

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG  +GD +LV++ +R+   +     + R  G+ F I+L +  +       A  +
Sbjct: 328 NVNDTLGHRIGDQLLVAVAKRMLSTIAEGSCVVRQGGDEFIILLPN-TSESDAQKVATDL 386

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R +++    L + ++ +T SIG + +         + K A+ AMY AK  G N    F  
Sbjct: 387 RMALSKRFQLEQHQLIITPSIGISLYPKDGRDLDTLYKRADTAMYRAKQSGRNRFAMFTQ 446

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                    ++I+  L  A+EN+EL L Y P   L D+++V  EALI+W+    G +S  
Sbjct: 447 EMQAHSTRVLLIENALHSALENNELSLHYQPQFSLSDKKLVASEALIRWNSHSLGRVSPG 506

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAE+   I AI  +++    R I  W D    PP+ + IN++     + +L   + 
Sbjct: 507 EFIPIAEDSGQIVAIGEWVITESIRQIREWID-LGYPPLKVAINLSYAQFQEPDLANFIA 565

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +       S ++L  +E + M +PE +  ++     IG+  ++DDFGT  S LSYL  
Sbjct: 566 QTLEACRVPSSLLELELTERIAMDDPESAIEVINAFHDIGLETSIDDFGTGYSSLSYLQK 625

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +      E  ++I+ +II +AK +    IA+ +  +  + ++T +GCD
Sbjct: 626 LPVYKLKVDQSFVRNMINDENNLSIVSAIIALAKKLGMRTIAEGVETQEQLDKITSLGCD 685

Query: 934 YIQDSHVASPLGFNSILK 951
            +Q   +  P+  +   +
Sbjct: 686 EVQGYLLGHPVPPDEFEQ 703


>gi|254000138|ref|YP_003052201.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986817|gb|ACT51674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 751

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 162/732 (22%), Positives = 303/732 (41%), Gaps = 18/732 (2%)

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-RWHAKVGYITFSGIACIAI 295
                 +        +  A +  ++  +L+ F+         W   +  I         +
Sbjct: 20  YLWQPPLLWTYIISDLMIAVAYYSIPMALVYFVRKRPDLQFNWIFVMFSIFIFACGTTHL 79

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------IFI 349
           L   + + P      A  ++ ++    +        +   +A+ +     L      +  
Sbjct: 80  LSLWTIWNPD---YWADASMKAVTGVASLVTAIMLWRLMPQALRIPSTRQLEETVERLEH 136

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                 +A       +     LV      +  I   +   +       Q ++++ +R  +
Sbjct: 137 EVEERELAERSLAAFNDTLETLVQQRTAELEEINRLLKLEIDLRREAEQTLYAEKQRAVV 196

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTIL 468
            +   GD V   D         P    + G ++    G         ++ + R      +
Sbjct: 197 TLQSIGDGVITTDKQSRVNYLNPVAERMTGWSNAEAQGKPLLEVFRIVNESSRKLVPNPV 256

Query: 469 DSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           D  + +     L     +       + +     P+ + +G++L  + + +D++E +    
Sbjct: 257 DVVLQHGEIYGLANHTALIGRHGNEYAIEDSAAPIRDQDGNVLGVVLVFHDVSEARNMAN 316

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+PNR    DRL   L ++  D      +M +D+D +K IND LG  V
Sbjct: 317 KMTYLAEHDYLTGLPNRLLLNDRLNQALTIARRDQEF-IALMFLDLDHFKNINDSLGHEV 375

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  + RR+   L+  D ++R  G+ F I+L    N    A+ A  +  +  +P  +
Sbjct: 376 GDQLLKMVARRLESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKLLAAATVPYEI 435

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
              EITV+ASIG A +         + KNA+ AMYHAK  G N+ + F   ++    +  
Sbjct: 436 GSHEITVSASIGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFTRAMNERVMEIA 495

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L  AVE +E  L Y P I +   ++VG EALI+W HP WG ++   F+ IAE+  
Sbjct: 496 ELESKLRRAVERNEFVLYYQPKIDIRTGQVVGAEALIRWQHPSWGLVAPDRFIPIAEDSG 555

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ I L+++    R    W+       I + +N+++  L  +   + +  ++  +   P
Sbjct: 556 LIRPIGLWVMREACRQNQEWQAAGLAR-IPVAVNLSTVQLRQHNFLQEVSEILLMSGLEP 614

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ESV +         L +LR +G+ L LDDFGT  S LSYL  +P + VK + 
Sbjct: 615 DYLELEVTESVAIHAETEVINWLHKLRSMGVKLALDDFGTGYSSLSYLKRLPINNVKIDK 674

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           I+ +II M+  +   +IA+ +     ++ L + GCD +Q    + P
Sbjct: 675 SFIRDIETDPDDATIITAIIRMSHGLRLNVIAEGVENINQLEFLKKEGCDQMQGFIASRP 734

Query: 944 LGFNSILKLLKE 955
           +  +    LL+ 
Sbjct: 735 VPADEFALLLQN 746


>gi|126658376|ref|ZP_01729525.1| hypothetical protein CY0110_27490 [Cyanothece sp. CCY0110]
 gi|126620308|gb|EAZ91028.1| hypothetical protein CY0110_27490 [Cyanothece sp. CCY0110]
          Length = 1242

 Score =  572 bits (1475), Expect = e-160,   Method: Composition-based stats.
 Identities = 166/580 (28%), Positives = 285/580 (49%), Gaps = 8/580 (1%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILG 439
            L    +I  +       Q ++   +R    +    D+VW +D      +   P      G
Sbjct: 657  LGSLGMITDISQRKKTEQALYESEQRLEGILTSIQDVVWSFDANFSRLIYINPAAQITFG 716

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                 ++     W   I  +D++  +      +    G  +Y++R+   DNQ  W+  RI
Sbjct: 717  FLLEELYKNPNLWWQLIDTDDQELVQ--YHRQIVKEMGHTEYKYRIIRKDNQIRWLSSRI 774

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            R + +  GD++R  GI +DITE+K++ E +  NA  D LT +PNR  F+DRL   +    
Sbjct: 775  RCVYDDKGDLIRIDGIDSDITEKKRAEEQLQYNATHDPLTNLPNRILFMDRLEHAIARQK 834

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               N    V+ +D+D++K IND LG A+GD +L  + RR+ + L   D LARL G+ F I
Sbjct: 835  RHLNFTFAVLFLDLDEFKVINDSLGHAIGDQLLQEIARRLEDGLCSDDTLARLGGDEFAI 894

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L    +  K    A  +   +  P  L  ++I +  SIG A  + +   +SE+L++A+ 
Sbjct: 895  LLEDIEDIKKAIKIAQQIHLDLIKPFVLQGQDIFINTSIGIALNSPAYEAASEILRDADT 954

Query: 680  AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK  G      F  ++      R+ ++ DL + +   E  L Y PII L   ++ G
Sbjct: 955  AMYRAKADGKACYAIFDRQMHERAVSRLKLETDLRIGINKQEFSLYYQPIISLKTGKLTG 1014

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFI 796
             EALI+W+HP    IS  +F+ +AEE  +I  I  + L+   + +  W  +      + +
Sbjct: 1015 FEALIRWNHPHKKLISPDQFIPVAEETGLIIPIGEWTLKEACQQLKIWHQKYPRYSHLKV 1074

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N++SK L    L + +   +  T      +KL  +E+++M N + +  +L ++++  I
Sbjct: 1075 GVNLSSKQLKYTNLLDTIDQTLKDTQLDSRYLKLEITETLLMENLQAATKILLKIQERDI 1134

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
             + LDDFGT  S LSYL   P +T+K + S +           I+R+I+ +A  +   +I
Sbjct: 1135 EICLDDFGTGYSSLSYLHRFPVNTLKIDRSFVRLMEPHNENVEIIRAIVTLAHILGLDVI 1194

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            A+ +  ++ + +L R+GC+  Q    A PL  + + KLLK
Sbjct: 1195 AEGVETQLQLTQLQRLGCEQGQGYFFAKPLPVHEVEKLLK 1234



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 4/144 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++ +       Q +    E+    V  + + +W  D           +A +LG    
Sbjct: 535 LVSLRDITENYEAQQALSDSEEKYRQIVETATEGIWITDQDNKTTFVNQQMAQMLGYKIE 594

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M     N   ++   D    +  +            ++FR R  D +  W I+   P+ 
Sbjct: 595 EMIDK--NLFDFVDFEDNARVQKNIQDRSRGITETHDFKFRCR--DGKELWTIVSTNPLF 650

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +   + L  +G+  DI+++KK+ +
Sbjct: 651 DHQENYLGSLGMITDISQRKKTEQ 674



 Score = 86.9 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 4/160 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            +           V   ++  +TV   V         +    E+  L    S   +   D
Sbjct: 283 GSYRWLAWTSVASVEEKMI--YTVAHDVTEWKKIEAALRKSEEKFRLLFDKSPTAMGLVD 340

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +    +        ++G  +  +           H +D +  + + +  +       + E
Sbjct: 341 MKGQLINVNEAFCQLVGYGAEELLTKGCA--DITHPDDLEKEKQLFNQLLSGEINSFRLE 398

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            R    + Q  + + +   + +  G+ L  +    DIT+Q
Sbjct: 399 KRYIKKNKQIIYGLHQATLIRDIEGNPLHLLSQIIDITQQ 438



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P  A  LG +   +      +L ++H  D       L++ +  ++    +E R R  D
Sbjct: 226 INPIFARTLGYSVAELKSKP--FLEWVHPEDVTTTLEQLENLIKGKQVPY-FENRYRCHD 282

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             + W+                   +A+D+TE KK
Sbjct: 283 GSYRWLAWTSVASVEEK----MIYTVAHDVTEWKK 313


>gi|71907676|ref|YP_285263.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71847297|gb|AAZ46793.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 827

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 150/633 (23%), Positives = 279/633 (44%), Gaps = 10/633 (1%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--FTV 386
             +   +R  +L+               A   R D  I+   L    +L  + +      
Sbjct: 186 MAIHPDDRQRVLLEWRAAALGEATFQTEARFLRADGSIVWARLNAAAMLDGLHLRGHVQT 245

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++ +         +F + ER  + +   GD V   ++  D          + G    +  
Sbjct: 246 VEDISERKITEDALFEEKERAQVTLNSIGDAVLTTNLKGDVTYLNLVAEMMTGWPREAAI 305

Query: 447 GPIRN-WLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G   +     ++   R+        +    R   L  +  +   D     +     P+ N
Sbjct: 306 GQPLSEVFRILNGTTREVAPNPAQLAIRENRTVGLAADSILIHRDGLEAAIEDSAAPIHN 365

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G +   + + +D++E +     +   A  D LTG+PNR    +RL+  +  +   +  
Sbjct: 366 RDGQVAGAVIVFHDVSESRAMALKMAHLAQHDFLTGLPNRALLTERLSRAIGQARRHNK- 424

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  ++ +D+D +K IND LG AVGD +L  +  R+   ++  D + R  G+ F I+L   
Sbjct: 425 RVGMLFLDLDYFKHINDSLGHAVGDQLLQQVAERLIVCIRDTDTVCRQGGDEFVILLAEI 484

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +   A  A  +  + A P  +   E+ V+ SIG + +    + +  ++KNA+ AMYHA
Sbjct: 485 EQARDAAPIAEKLLAAFAEPCLIAGNELHVSLSIGISIYPDDGMDADTVMKNADTAMYHA 544

Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N+ + F           +  + +L  A+   E  L Y P I L    ++G EALI
Sbjct: 545 KANGRNNYQFFTTEMNTRAVRRLFIEGNLRRALRQGEFMLYYQPKIDLASGMMIGSEALI 604

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G +   +F+ IAEE  +I  I  ++L    R + +W++      + + +NI++
Sbjct: 605 RWQDPEHGLVYPKQFVPIAEESGLIVPIGSWVLREACRQVRAWQESGL-VAVPVSVNISA 663

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +    +  EG+  ++ +T   PS ++L  +ES++M + E S  +L  L+ +G+ L +DD
Sbjct: 664 VEFRHKDFLEGVALILKETGMLPSYLELELTESILMHDAESSATVLEALKTMGMQLAIDD 723

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P +T+K + S +          +I+ ++I M KN++  ++A+ +  
Sbjct: 724 FGTGYSSLSYLKRFPINTLKIDQSFVHDIAIDPDDASIVGAMIGMGKNLKQRVVAEGVET 783

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           E  +  L  + CD  Q      PL  +   +LL
Sbjct: 784 EEQLAFLRTLHCDEGQGFLFGRPLPADEFARLL 816



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 6/193 (3%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--TVIQHV 390
           G   AV    + +      + L  A  + +    +Q      LV  ++   +    ++++
Sbjct: 65  GQGIAVFEQVSRLAANALILILSSADDEEVARLAVQNGADDYLVKGLVDAHWLPRTLRYL 124

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           +      Q +     R       S   ++  DI  + V T      I GL      G   
Sbjct: 125 IERKTTRQALTLSEARFRAMSDASPLGIFVSDIHGECVYTNAAYHKISGLNLEQTLGT-- 182

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           NW   IH +DR        +         Q E R   AD    W  +    M +    + 
Sbjct: 183 NWSMAIHPDDRQRVLLEWRAAALGE-ATFQTEARFLRADGSIVWARLNAAAMLDGL-HLR 240

Query: 511 RYIGIANDITEQK 523
            ++    DI+E+K
Sbjct: 241 GHVQTVEDISERK 253


>gi|220908650|ref|YP_002483961.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7425]
 gi|219865261|gb|ACL45600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7425]
          Length = 1094

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 144/579 (24%), Positives = 277/579 (47%), Gaps = 13/579 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442
              VI+++         +    E+       + + ++        ++  P +A I G  + 
Sbjct: 503  IAVIRNITKRKRAENELRQAEEKYRSIFENATEGIFQSSPSGSYISANPALARIYGYDSP 562

Query: 443  GSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              +   + +    ++   + R  F   + S +   +    +E +V   D    W+    R
Sbjct: 563  QELQHHLTDIGRQLYVNPDRRQQF---VHSILEQGQVT-DFESQVYRKDGSVIWISENAR 618

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             + +  G+IL + G   DI+ +K++   I   AF D LTG+PNR  F DRL   L  +  
Sbjct: 619  AVRDRQGNILYFEGTVEDISARKQAELTIHYQAFHDLLTGLPNRALFDDRLNQALADARR 678

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              +L   V  +D+D++K IND LG A+GD +L  + +R+   L+  D +AR  G+ F ++
Sbjct: 679  YQHL-LAVFFLDLDRFKVINDTLGHAIGDQLLQQVAQRLLPCLREIDTIARWGGDEFTLL 737

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L            A  +  S+  P +L    + +TAS+G A +       + +L+NA+ A
Sbjct: 738  LPHVQTPADSVKIAERLLASLKPPFSLKGHNLHITASLGIALYPHDGEDGTTLLRNADAA 797

Query: 681  MYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +Y AK  G N +  +   ++S   + + ++ +L  A+E  EL + Y P I     EI+ L
Sbjct: 798  LYRAKEEGRNGLYCYTPMLNSRGHELLALESELHKALEQQELDVYYQPQINAATGEILRL 857

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W H + G +S   F+ +AEE  +I  I  ++LE        W+ +   P +   +
Sbjct: 858  EALVRWQHSQLGLVSPQTFIGLAEENGLIMPIGQWVLETACHQCRQWQAR-GFPGLGTAV 916

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++ +      L + +   +  T  +  R++L  +E+  M N   +R LL  L ++G+ +
Sbjct: 917  NLSVRQFQQPHLVQQVAETLQYTGLAADRLELEITETTAMQNVNLTRTLLHELDQMGVGI 976

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             LDDFG+  S L+YL   P  ++K + + +     + +  AI++++I + + +  +++A+
Sbjct: 977  ALDDFGSGYSSLNYLRQFPLHSIKIDRTFIQELPYSVQDQAIVKAVIALGRGLNLSVVAE 1036

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  +  +K L  +GCD IQ      P+   ++ +LL++
Sbjct: 1037 GVESQSQLKVLRSLGCDIIQGYFFGPPIAAAAMTQLLEQ 1075



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 4/139 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +     R    +  S D++   D     +  +P +  +LG    +  G       
Sbjct: 140 RAEAALIQAEARWRSLIHNSSDLITILDAQGTVLYHSPVLKRLLGYHPQNCEGKSA--FG 197

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H  DR   +      + +    L  E+R R  D  + ++    R +  ++  +   + 
Sbjct: 198 LVHPQDRKQVQQTFQQAITHTEFTLTVEYRFRHQDGSWRFLESTGRNLL-ADPAVAGIVV 256

Query: 515 IANDITEQKKSLEGILCNA 533
              DIT+ K++ E  L  A
Sbjct: 257 NTRDITDHKRT-ESALRQA 274



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 62/184 (33%), Gaps = 4/184 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-IQHVLATGYFSQGIFSDGERQS 408
           + + +      +  +     +    L+    + G  V  + +         +    E+  
Sbjct: 220 FTLTVEYRFRHQDGSWRFLESTGRNLLADPAVAGIVVNTRDITDHKRTESALRQAEEKYR 279

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTI 467
                + + ++        +   P +A + G  +   +   + +    ++++     R  
Sbjct: 280 SIFENAVEGIFQSSPEGRYIRVNPALARMYGYDSPEELLAHLTDIGRQLYVD--PERRAE 337

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               +  +     +E +V   D    W+    R + +  G +L Y G   +IT++K++  
Sbjct: 338 FQRLIDQQTIVTHFEAQVYRRDGSIIWITEHARAVRDGTGKLLYYEGTVENITDRKRTEL 397

Query: 528 GILC 531
            +L 
Sbjct: 398 QLLQ 401



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 8/120 (6%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTI 467
           +   GS D  W           +     + G +S  +          I H  D       
Sbjct: 31  IVFSGSNDAQWS------MQYLSRGCLALTGYSSDELAQKGGEAFNAITHPEDLPRVLAT 84

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L + +       + E+R+R    +  W++ +   + + +       G   DIT  K++  
Sbjct: 85  LSAAIA-SSEPYEVEYRIRTKSGEEKWVLEKGHRVLDEDQCTCGIEGFITDITPLKRAEA 143


>gi|291612949|ref|YP_003523106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583061|gb|ADE10719.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 751

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 174/727 (23%), Positives = 311/727 (42%), Gaps = 28/727 (3%)

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
             + + L + ++ F   ++ W +    +G I F       +L      +       A I 
Sbjct: 24  FLNSVFLLAGIVAFGMGFIRW-QTSVAMGEIDFGFAGLCFVLLAYLRRHRSQADMFASIV 82

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIP--------------AWILIFIWFIGLWMAITK 360
           L      +    I         ++  +                W+   +  I +   +  
Sbjct: 83  LVLCYGLFLSIYISASYNTMRLSLFFLLAAAAFFLKGRIAGRIWLAFILLTIVIVHVLPY 142

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG----IFSDGERQSLAVLGSGD 416
                         L L+ + I F   +    + + S+     +    ER   A+ G+GD
Sbjct: 143 FETGYSHIDIFTTCLYLLALFIIFENYETFKESQHTSEEEQALLRLTEERWRHALEGTGD 202

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            VWDW         +   + +LG A G +     +    IH +D    R  L  F+  R 
Sbjct: 203 AVWDWRPETGEFHYSRRFSEMLGYAEGELGKHAEHIFNIIHPDDEPRVRDELHDFIQRRA 262

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           G    E R+ A D  + WM+ R +    +        +G  +DIT  K+    +   A  
Sbjct: 263 GNYVSEMRLSARDGSWKWMLCRGKVAQRDDEHSAGLMVGTFSDITLLKQHERQLEHIAHY 322

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTGIPNR    DRL   L  S   +     V  +D+D +K +ND +G   GD VL+ +
Sbjct: 323 DALTGIPNRVLLADRLQQALAHSKR-EGTILAVCYLDLDGFKLVNDTMGHEAGDKVLIEV 381

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           T+RI + ++  D +ARL G+ F ++L+  +   + +     + + I+ PI +  R   V+
Sbjct: 382 TQRIKKSIRGDDTVARLGGDEFAVLLLGLHAPEECSASLNRLLEEISQPIEIKNRLFEVS 441

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713
           ASIG + +      +  +L++A+ AMY AK  G N    +   + +  R   +    L L
Sbjct: 442 ASIGVSIYPGDDHDADTLLRHADQAMYTAKQSGKNRYYLYDTENDQRARSHHEFLRRLAL 501

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +E  L Y P + +   ++VG EALI+W HP+ G ++  +F+   E   +   +  +
Sbjct: 502 ALGRNEFELYYQPKVDMRTLQLVGAEALIRWHHPERGLLAPGDFLHAIEGTTLEVELGDW 561

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKLSF 832
           ++      + +W +     P+ + INI+ + L  N+    ++  + +        +++  
Sbjct: 562 VVATALAQLEAWHEAG--LPMELSINISVRHLQANDFAWKLKRKMLRYSHLPKGCLQVEV 619

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
            E+  + +  R    + R RKIGIS  LDDFGT  S LSYLG +P D +K + S +    
Sbjct: 620 LETAALEDIPRVSDTIERCRKIGISFALDDFGTGYSSLSYLGRLPVDALKIDQSFIRDML 679

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +   AI++ +I +AK     I+A+ +  E   ++L  MGC+Y Q   +A P+  + + 
Sbjct: 680 KDKGDRAIVQGVIALAKVFNRKIVAEGVESEELFRDLVEMGCEYGQGYGIARPMPASELP 739

Query: 951 KLLKERF 957
             L++  
Sbjct: 740 AWLEKWN 746


>gi|313202102|ref|YP_004040760.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441418|gb|ADQ85524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 751

 Score =  571 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 162/732 (22%), Positives = 303/732 (41%), Gaps = 18/732 (2%)

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-RWHAKVGYITFSGIACIAI 295
                 +        +  A +  ++  +L+ F+         W   +  I         +
Sbjct: 20  YLWQPPLLWTYIISDLMIAVAYYSIPMALVYFVRKRPDLQFNWIFVMFSIFIFACGTTHL 79

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------IFI 349
           L   + + P      A  ++ ++    +        +   +A+ +     L      +  
Sbjct: 80  LSLWTIWNPD---YWADASMKAVTGVASLVTAIMLWRLMPQALRIPSTRQLEETVERLEH 136

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                 +A       +     LV      +  I   +   +       Q ++++ +R  +
Sbjct: 137 EVEERELAERSLAAFNDTLETLVQQRTAELEEINRLLKLEIDLRREAEQTLYAEKQRAVV 196

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTIL 468
            +   GD V   D         P    + G ++    G         ++ + R      +
Sbjct: 197 TLQSIGDGVITTDKQSRVNYLNPVAERMTGWSNAEAQGKPLLEVFRIVNESSRKLVPNPV 256

Query: 469 DSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           D  + +     L     +       + +     P+ + +G++L  + + +D++E +    
Sbjct: 257 DVVLQHGEIYGLANHTALIGRHGNEYAIEDSAAPIRDQDGNVLGVVLVFHDVSEARNMAN 316

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+PNR    DRL   L ++  D      +M +D+D +K IND LG  V
Sbjct: 317 KMTYLAEHDYLTGLPNRLLLNDRLNQALTIARRDQEF-IALMFLDLDHFKNINDSLGHEV 375

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  + RR+   L+  D ++R  G+ F I+L    N    A+ A  +  +  +P  +
Sbjct: 376 GDQLLKMVARRLESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKLLAAATVPYEI 435

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
              EITV+ASIG A +         + KNA+ AMYHAK  G N+ + F   ++    +  
Sbjct: 436 GAHEITVSASIGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFTRAMNERVMEIA 495

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L  AVE +E  L Y P I +   ++VG EALI+W HP WG ++   F+ IAE+  
Sbjct: 496 ELESKLRRAVERNEFVLYYQPKIDIRTGQVVGAEALIRWQHPSWGLVAPDRFIPIAEDSG 555

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ I L+++    R    W+       I + +N+++  L  +   + +  ++  +   P
Sbjct: 556 LIRPIGLWVMREACRQNQEWQAAGLAR-IPVAVNLSTVQLRQHNFLQEVSEILLMSGLEP 614

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ESV +         L +LR +G+ L LDDFGT  S LSYL  +P + VK + 
Sbjct: 615 DYLELEVTESVAIHAETEVINWLHKLRSMGVKLALDDFGTGYSSLSYLKRLPINNVKIDK 674

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           I+ +II M+  +   +IA+ +     ++ L + GCD +Q    + P
Sbjct: 675 SFIRDIETDPDDATIITAIIRMSHGLRLNVIAEGVENINQLEFLKKEGCDQMQGFIASRP 734

Query: 944 LGFNSILKLLKE 955
           +  +    LL+ 
Sbjct: 735 VPADEFALLLQN 746


>gi|158337063|ref|YP_001518238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158307304|gb|ABW28921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 1015

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 156/558 (27%), Positives = 266/558 (47%), Gaps = 8/558 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDN 463
               +     IV+  +      R + +    T+ G A   + G     +   I  +D   
Sbjct: 177 LQSLIDSLPGIVFTCNSDLGWSRRSLSQGCLTLTGYAPEELLGTFNLTYNTLIDPDDLPQ 236

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               + + +  ++     E+R+R    Q  W + +   + +  G  L   G   DI++ K
Sbjct: 237 LTAAITTAIATQQV-YTVEYRIRTKSGQLKWFLEQGNGIFDKQGQALGLEGFITDISKLK 295

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +  +AF D LTG+PNR  F+DRL   +       +    V+ +D+D++K +ND L
Sbjct: 296 QAETQLRHDAFYDKLTGLPNRSLFMDRLEYCIKRVKRHPDQIFAVLFLDLDRFKVVNDSL 355

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +LV +  R+   ++  D LARL G+ F ++L    +          +++S+  
Sbjct: 356 GHAAGDQLLVEIAERLTACVRESDTLARLGGDEFTVLLEGIKDLSDALLVCGRIQQSLNC 415

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P NL  RE+ +T S G A  T       ++L NA+ AMY AK  G    E F      + 
Sbjct: 416 PFNLNGREVLITVSTGVALSTMGYDDPEQLLHNADAAMYRAKALGKAQWEVFTADMHSNA 475

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ ++ DL  A+E  E  L Y PI  L    IVG EAL++W HP  G IS  EF+ +A
Sbjct: 476 SAQLQLEVDLRRAIERQEFQLHYQPIFHLETAAIVGFEALLRWHHPLRGLISPVEFIPVA 535

Query: 762 EELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISK 820
           EE  +I  I+ ++L+   R +  W+ Q     P+F+ +N +SK   +  L   ++ ++  
Sbjct: 536 EETGLILPISWWVLQEACRQLSRWQTQFPLEVPLFVSVNFSSKQFSEVGLIPQIEDILHT 595

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P  +KL  +ES +M N E +   L  ++ +GI L +DDFGT  S LSYL   P D 
Sbjct: 596 TGLAPQSLKLEITESAIMENAEATAAKLLEIKALGIQLGIDDFGTGYSSLSYLHRFPVDI 655

Query: 881 VKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S ++     + + I+ +I  +++N+    +A+ +       +L  M C Y Q   
Sbjct: 656 LKVDRSFVSAMDSHENLQIVHTITMLSQNLGMRAVAEGVETAEQAAQLRAMNCQYAQGYF 715

Query: 940 VASPLGFNSILKLLKERF 957
            + P+  +S+  LL   +
Sbjct: 716 FSKPIDASSMEHLLAHHY 733


>gi|119490050|ref|ZP_01622674.1| hypothetical protein L8106_20760 [Lyngbya sp. PCC 8106]
 gi|119454202|gb|EAW35354.1| hypothetical protein L8106_20760 [Lyngbya sp. PCC 8106]
          Length = 923

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 156/588 (26%), Positives = 289/588 (49%), Gaps = 12/588 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   + Q   +     Q +    +R  LA+ GS D +WDW++  + +  +P    +LG  
Sbjct: 335 LEQRIQQRTSSLKQLDQALKISEDRWKLALQGSNDGIWDWNVQTNEIFFSPRAKEMLGYE 394

Query: 442 SG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                   +  W   IH +DR      +   +  +      E+R+R  D Q+ W++ R +
Sbjct: 395 EDNETTNHLAEWEKQIHPHDRKRVLKAIWDHLDQQTEYYSTEYRIRCKDGQYKWVLHRGQ 454

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + N  GD +R +G   D++EQK+    +   A+ D+LT +PNR  F+DRL   L+    
Sbjct: 455 ALWNEIGDPIRMVGSQTDLSEQKQVETQLFYYAYHDSLTCLPNRAFFMDRLHLALEQVRQ 514

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ ID+D++K +ND LG   GD++L+ +  ++ + +   D LARL G+ F I+
Sbjct: 515 YSEHLFAILFIDLDRFKLVNDGLGHLAGDELLIRVGHKLQQCISVHDTLARLGGDEFAIL 574

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-----SSKITSSEMLK 675
           L            A  +   +  P  L ++ +++TASIG           S   S+++L+
Sbjct: 575 LDPIQGISDSIIVAERILAILQQPFILEDQTVSITASIGITFSHYYTANHSYKHSTDILR 634

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A++AMYHAKH   +    F   +      R+ ++ DL  A+E+S+L + Y PI+ L   
Sbjct: 635 DADIAMYHAKHHSTSKYAIFDSKMQMDTLIRLRLENDLRAAIESSQLKVYYQPIVCLKTG 694

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMP 792
           +I   EAL++   PK G IS  EF+ IAEE  +I  +  ++L    + +  W+ Q     
Sbjct: 695 KIKSFEALVRLPDPKKGLISPGEFIPIAEETGLIIPLGEWVLRAACQQLRQWQIQGWIDV 754

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N+A +     ++   +Q ++ +T  SP+ ++L  +ES +  + E     L +LR
Sbjct: 755 NVSVSVNVAGQQFSQKKIVNLVQQILQETELSPANLRLEVTESAIAEHLEWVARRLSQLR 814

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
           ++G+ + +DDFGT  S L  L   P DT+K + S +   T +      + +I   A ++ 
Sbjct: 815 QMGVQILIDDFGTGYSSLDRLQRFPIDTLKIDRSFVAKMTSQSSNSKFVEAIANFAHSLG 874

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +++A+ I      + +  +GC+Y Q +  +  +   ++  L+ +R P
Sbjct: 875 FSVVAEGIETVEQQQLIQYIGCEYGQGNLFSPAVDVATMTALI-QRNP 921


>gi|77920158|ref|YP_357973.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546241|gb|ABA89803.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 703

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 138/561 (24%), Positives = 264/561 (47%), Gaps = 8/561 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  +        +   +         +   P +  +LG +   + G   + L   H  D 
Sbjct: 139 NSEKLFRSIFQNAVTGMATCSPDGRFLKVNPALCEMLGYSENELFGV--SVLDITHPTDI 196

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +    +    +G +     YE R    D +  W  +      N +G     + + ++IT 
Sbjct: 197 ELTERLFAEAMGGQTRSHDYEKRYIRRDGETLWAHVSTSWHYNEDGTPSYSVALISNITP 256

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++ + I   A+ D LTG+PNRQ FL+   + L  +  +      V +IDID++K +ND
Sbjct: 257 HHQAKQKIRQLAYFDGLTGLPNRQLFLEHCNSSLTQARRN-RSPLGVCIIDIDRFKGVND 315

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L ++++R+ + +   D+LARL  + F  ++ S  +  + +  A  M   +
Sbjct: 316 TYGYESGDALLKTVSQRLSDCMSREDVLARLGSDEFAAVIASVGSQDEFSVLAQKMLHCL 375

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             PI + E+++  +  +G A +    + +  +LKNA  AM+ AK  G N+   F     R
Sbjct: 376 TEPIQIGEQKLYCSGGMGIALFPVDGVDAEALLKNAATAMHQAKQHGSNNFRFFSKGMNR 435

Query: 702 SDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                I+ +  L  A++  +L L Y P + L    I+G+EAL++W+ P+ G +S   F+ 
Sbjct: 436 MAWERIEIETGLRRALDLQQLALHYQPQVDLKTGHIIGMEALLRWESPELGRVSPMRFIP 495

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++LE   R   +W      P + + +NI+++        + + A+I 
Sbjct: 496 LAEETGLILPIGNWVLESACRQAKAWHRA-GFPSLRMAVNISARQFKQAGFIDRLDAIIQ 554

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++  +P  +++  +ES++M   + + + L  ++  GI L +DDFGT  S+LSYL + P D
Sbjct: 555 RSGINPELLEMELTESLIMEKSDETLMTLVDIKSRGIKLAIDDFGTGYSMLSYLKHFPID 614

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +          AI  +II MA +++  +IA+ I     +  L    C+  Q 
Sbjct: 615 RIKVDRSFVRDIPENTDDAAITEAIIAMAHSLKIEVIAEGIETREQLAFLKDRACEEGQG 674

Query: 938 SHVASPLGFNSILKLLKERFP 958
            +   P+   +  ++L +++P
Sbjct: 675 YYFGRPVPVETAAEILAQQYP 695


>gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain-containing protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076827|gb|ADJ66226.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Herbaspirillum seropedicae
           SmR1]
          Length = 948

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 146/655 (22%), Positives = 286/655 (43%), Gaps = 14/655 (2%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL-DNDIIQ 368
           + R    ++  +      +H         L    +  + I  +G+  ++        +  
Sbjct: 294 LFRHPSTTVSSFDIAGQTWHLEISVPPRSLFADHYGSLLILLVGVIASLLGAAYMRALSM 353

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVR-- 425
            +     ++            +L+    ++ +     R    A+  S + +         
Sbjct: 354 RSHRIQQLVEERTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSAQEPD 413

Query: 426 -DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                  P  A I G +S    G    +L     +D + F T+  +    R        R
Sbjct: 414 YTIEYVNPAFARITGYSSTEAVGKSIRFLEGRD-SDPEGFETVWIAMREQR--EHNVVLR 470

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
               D    W    I P+ + +G++  ++    DIT  K+    +   A +D LTG+ NR
Sbjct: 471 NYHKDGSELWNDFYIAPVRDESGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINR 530

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                 L   + ++         V+ +D+D++K +ND LG   GD +L ++  R+   ++
Sbjct: 531 HMLRHHLEQAIGVAERQKQALW-VVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVR 589

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +ARL G+ F +IL  ++           +  ++A P+ L    + +T S+G A + 
Sbjct: 590 EADTVARLGGDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSVGVACYP 649

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
           +       ++K+A++AMY  K  G N+ + +   ++    +R+ I+ DL  A+++ E  L
Sbjct: 650 NDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLL 709

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + L    ++G EALI+W HP+ G +S + F+ +AEE  +I  I  ++L       
Sbjct: 710 HYQPKVDLASGRVIGSEALIRWQHPQLGMVSPARFIGLAEETGLILPIGAWVLRAACTQC 769

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+       I + +N++    L  +L   +  ++  T   P  ++L  +ES++M + E
Sbjct: 770 RQWQ-LGGYADISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVE 828

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900
            +  +L  L+K+G+ L++DDFGT  S L+YL   P D +K + S +          AI  
Sbjct: 829 HAIGILAGLKKLGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITA 888

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           SII +A++++  +IA+ +  +  +  L   GCD IQ    + P+  +   ++L++
Sbjct: 889 SIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQILRQ 943


>gi|119491300|ref|ZP_01623354.1| hypothetical protein L8106_21924 [Lyngbya sp. PCC 8106]
 gi|119453464|gb|EAW34626.1| hypothetical protein L8106_21924 [Lyngbya sp. PCC 8106]
          Length = 1266

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 152/576 (26%), Positives = 278/576 (48%), Gaps = 8/576 (1%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +I  +         +    ER  L      D+V   +     +  +P    +LG     
Sbjct: 687  GLILDISDRKRAEMALRESEERYRLLAENMSDLVCIHNAEGQYLYVSPSCQLLLGYDDKE 746

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            + G   +   + H  DR                 +   +R+R     + W+     P+ N
Sbjct: 747  LIG--EDPYTFFHPEDRSRILQT-SHLAALSGDPIPMTYRMRKKSGDYIWLETLTTPILN 803

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              G ++R    + D+T++ +  + +  +A  D+LTG+PNR   + R+   L       + 
Sbjct: 804  IRGQVVRLQTTSRDVTDRVQVEQQLRHDALHDSLTGLPNRDLLISRIELALQRLKRYQDF 863

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            +  ++ +D+D++K IND LG  VGD++L+S+ + +  L++  D++AR  G+ F I+L   
Sbjct: 864  QFAILFLDLDRFKVINDSLGHLVGDELLISVAQTLQGLIRPVDLVARFGGDEFVILLEEI 923

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +N  +    A  M   +  P  L ++E+ +T SIG    +S    + ++L++A+ AMY A
Sbjct: 924  DNINEAILIAKRMITKLQSPFILNQQEVFITPSIGIVYGSSDYHQAIDLLRDADTAMYRA 983

Query: 685  KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K +GG   E F  S       R+ ++ DL  A++  E  L Y PII +   +I G+EALI
Sbjct: 984  KAKGGERYEIFDPSMYLQALKRLHLENDLRQALDREEFILYYQPIISIETGKITGMEALI 1043

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801
            +W HP+ G I  SEF+ +AEE  +I  + +++L+     + +W         + I +N++
Sbjct: 1044 RWQHPQNGLIPPSEFIPVAEETGLIVPMGMWVLKTACSQMKTWHQHFPNTQNLKISVNLS 1103

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            ++ L +  L E +   +++  + P  + L  +ES+++ + E    LL  +R   I L+LD
Sbjct: 1104 ARQLREPTLIEQINQALTEIDFPPQLLTLELTESMLLDDIENIMTLLSNIRSHSIQLSLD 1163

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S LSYL  +P +T+K + S +    E  +  AI+  I+ +A  +   +IA+ I 
Sbjct: 1164 DFGTGYSSLSYLQRLPLNTLKIDQSFVNCIGEQGENSAIIDIIMTLATKLNLEVIAEGIE 1223

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 + L  +GC + Q   +A PL   ++  L ++
Sbjct: 1224 TRTQFEYLKNIGCPFAQGYLIAKPLTVEALTALFQD 1259



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 13/146 (8%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLP 454
            +    +R          +++ + +  D        +P   T+  + S  +   ++    
Sbjct: 570 ALKQAEKRLQNLAANLPGVIYRYVLSADDSDAVTYMSPGSRTLWEIESSEIEQDVKVLWE 629

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH  D    +  L            YE+R+        W+    +P    NGD++ + G
Sbjct: 630 LIHPEDLSRMQESL-QVSAETLEPWTYEWRITTPSGDQKWLQTLAKPEKQPNGDVI-WEG 687

Query: 515 IANDITEQKKS-------LEGILCNA 533
           +  DI+++K++        E     A
Sbjct: 688 LILDISDRKRAEMALRESEERYRLLA 713



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 46/139 (33%), Gaps = 6/139 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLP 454
            +     R           ++ + +  D     +  +P    +  + +  +         
Sbjct: 446 ALKQAETRFQNLAANIPGAIFRYILHSDGSDSVIYMSPGCYKLWEIEAREVEHNTEILWK 505

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H +D    +  +            YE+R+        ++    +P   +NGD++ +  
Sbjct: 506 LVHPDDLPGMQQSV-LLSAQTLEPWSYEWRIIMPSGIHKYVQSAGKPEQQTNGDVI-WDT 563

Query: 515 IANDITEQKKSLEGILCNA 533
           +  ++T  K++ + +   A
Sbjct: 564 MIIEVTALKQAEKRLQNLA 582



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 45/151 (29%), Gaps = 8/151 (5%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT----TTPDIATILGLAS 442
            + +         +  + +        +   ++  D++ +         P    + G+++
Sbjct: 312 FREITERKQSQIALKENEQFLQTIYDNTQYGIFIIDVLENGTFEYVELNPIHEQLTGIST 371

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G        +               V         EF       Q  W +  + P+
Sbjct: 372 AEIQGKTPA--QILPPEIAQAVEQNYRRCVETETIITYEEF--LPFRGQDLWWLTSLAPL 427

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            N  G I++ IG A +IT  K++       A
Sbjct: 428 KNDTGRIVQIIGTATNITALKQAETRFQNLA 458



 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 3/132 (2%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +  E     V  S + ++  +                      + G   +W   +    
Sbjct: 76  QTTEELYRQTVENSPNPIFSVNKQGKIKIWNVACQQNYHY-HQEIIGQ--SWKILLADES 132

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                +IL      ++     E   R AD   H+ I R+ P+ +S+  + + +     IT
Sbjct: 133 LSPLESILTQVFQEQKSFSGVEITYRGADQTKHFAISRLYPLFDSHQQVSQCVIANTHIT 192

Query: 521 EQKKSLEGILCN 532
           E+K++       
Sbjct: 193 ERKQAELERDKL 204


>gi|16331282|ref|NP_442010.1| hypothetical protein slr0359 [Synechocystis sp. PCC 6803]
 gi|1001455|dbj|BAA10080.1| slr0359 [Synechocystis sp. PCC 6803]
          Length = 1244

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 164/582 (28%), Positives = 279/582 (47%), Gaps = 8/582 (1%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLA 441
               ++  +       Q + +  +R    +    D+VW  D V    +   P  A + G +
Sbjct: 646  ELAMLTDITKRKSAEQALSASEQRLEGILGSIQDVVWSADAVSFATLYLNPTTAMVYGQS 705

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                +     W   +H  DR      L   +   + + + E+R+     +  W+  R + 
Sbjct: 706  LEVCYQSQNFWFEQVHPGDRLLLEYHLQLLME--KDQTELEYRIVQPGGKERWLFRRSQL 763

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +     LR   I +DITE+K + E +  NA  D+LT +PNR  FLDRL   L  +   
Sbjct: 764  VRDGEHQPLRIDSIDSDITERKLAAEKLHYNANHDSLTNLPNRSMFLDRLGHALQRNLRR 823

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +LR  V+ +D+D +K IND LG + GD +L  +  R+ + L+  D LARL G+ F +++
Sbjct: 824  RDLRFAVLFLDLDGFKIINDSLGHSCGDLLLQGIAHRLRQCLRPEDTLARLGGDEFTMLI 883

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
             +      +   A  + + +  P NL  +EI    SIG A          ++L++A+ AM
Sbjct: 884  ENITCPEDVIAVAQRIHQELQKPFNLNGQEIFTNTSIGIALNHPHYGHPQDVLRDADTAM 943

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G      F  +        +  + DL  A++  EL L Y PI+ L   ++ G+E
Sbjct: 944  YRAKAAGKGRYAIFNQTMHHHAVQRLQRENDLRRAIDRQELQLHYQPIVCLKTGQLQGVE 1003

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILI 798
            AL++W HP+ G I   EF+ IAEE  +I  +  ++L   +R I+  +        + + I
Sbjct: 1004 ALVRWQHPEEGLILPEEFVAIAEETGLIVPMGDWILWEASRQILELKQSFPQLSHLQVSI 1063

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++S+ L D  L + +  ++S T  +P  +KL  +ES+++ N   +  +L  LR+  I +
Sbjct: 1064 NVSSRQLRDQRLLKTVDEILSSTNLAPQDLKLEITESLLIDNLNLAADVLKSLRQRNIQI 1123

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916
            +LDDFGT  S LSYL   P +T+K + S +          AI+ +I+ +A  +   +IA+
Sbjct: 1124 SLDDFGTGYSSLSYLHRFPINTIKVDRSFVNTMEPNNQNTAIVHTIVTLAHTLGLDVIAE 1183

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             I  E  + +L  +GCD  Q  + A P+    +L  L  + P
Sbjct: 1184 GIETERHLTQLHWLGCDAGQGYYFARPIPSEDLLDFLTIQIP 1225



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 63/185 (34%), Gaps = 5/185 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
           F+      + +T    + ++    V  +           ++ +         +    ++ 
Sbjct: 477 FVADQATEITLTPLDGSMVVAEMRVSPIHWQKGKAFLVSLRDITEQHQARLALAESEKKY 536

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIH--INDRDNF 464
              V  + + +W  D  +        +A +LG +    +   I  ++  IH     +++ 
Sbjct: 537 RYIVELTSEGIWILDQDQQTTFANQQLADMLGYSVQEILEKNITAFVLVIHHLPESQNSH 596

Query: 465 RTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +  L SF           Y+ + +  D    W ++      +  G+    + +  DIT++
Sbjct: 597 QKTLQSFPRCVLPNHGQVYDVQFQRRDGSVLWGLVSRSAWYDQWGNYRGELAMLTDITKR 656

Query: 523 KKSLE 527
           K + +
Sbjct: 657 KSAEQ 661



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLAS 442
           V  H+LA     Q           A+  S + +   D        V       TI G   
Sbjct: 277 VASHILAAAIDRQEYEERLLLLQQAIDASSNGILITDALGSDNAVVYANQGFETITGFNR 336

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIR 500
             + G    +L  ++ + +      L+          + E  ++    D    W  + + 
Sbjct: 337 EEVIGQNCRFL--LNEDRQGEQNKQLEKLRTAIAHGQECEVVLKNYRKDGASFWNHLYLS 394

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           P+ N    ++ +IGI  D+T+QK + + + 
Sbjct: 395 PIYNQQNFLVNFIGIQTDVTQQKLAEQQLR 424



 Score = 46.5 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 35/143 (24%), Gaps = 23/143 (16%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +   V       Q + +  E  S  ++   D +   D         P    +     G
Sbjct: 407 IGIQTDVTQQKLAEQQLRASEEFFSSMIVTITDGLLIVDQEGIIQFVNPAAREMFKRQEG 466

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +                      +             E  +   D       +R+ P+ 
Sbjct: 467 ELLQQPFG----------------IPFVADQAT-----EITLTPLDGSMVVAEMRVSPIH 505

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
              G    ++    DITEQ ++ 
Sbjct: 506 WQKGKA--FLVSLRDITEQHQAR 526


>gi|39997114|ref|NP_953065.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984004|gb|AAR35392.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298506127|gb|ADI84850.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 799

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 162/752 (21%), Positives = 325/752 (43%), Gaps = 27/752 (3%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
           W++L  + I          +    L +  +     + ++  +  +  L  + ++ ++   
Sbjct: 49  WLLLTLVGIYCLVAGSTYYVSRIGLFLSPSQVMFLVVTASTVIAYNLL-LHLFYQRIICC 107

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
                    +L  +     +  +  A      + L  T    +      +R V  + A+ 
Sbjct: 108 FRFINVFQIVLDLLLVTVLVHLSGGASSWFWPVYLIVTIEAAFLIEG--KREVWFVGAFG 165

Query: 346 LIFIWFIGLWMAITKRLDND---IIQPALVGGLVLIVILIGFTVIQHVLATG-------- 394
            I    +   +     + N     ++P L      I+++  +  + +  A          
Sbjct: 166 GILYGALL-ALEHFGFIPNVPMPFVEPGLHQDPHYILLVWLWVSLLNAAAAVIGSYFVSV 224

Query: 395 --YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S+      ER    +  + D++  +               +LG  +        ++
Sbjct: 225 IERESEATRQSEERLMGFLDTANDLILSFSPEGRLRYVNEAWQQVLGYTAEE--AKELSF 282

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              IH + R+     L+  +         E  + A   +   +   +    +  G     
Sbjct: 283 FGIIHPDSRERCNAELERILAGDVLS-PLEATLVAKGGRSIIVEGSLTCGVDGEGS-TAV 340

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            GI  DITE+K+  E +   A  D LTG+PNR  FLDRL      +    +    +M +D
Sbjct: 341 WGICRDITERKQVEEQLYRLAHHDTLTGLPNRILFLDRLQQAKAHANRYRH-HVALMFLD 399

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K IND LG  VGD +L  + +R+ + ++  D +AR+ G+ F ++L++ ++   +  
Sbjct: 400 LDRFKIINDTLGHPVGDKLLQEVAKRLVDCVREVDTVARIGGDEFTVVLVNIDSVEDVKR 459

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + KS+++P  +   E+ +T SIG A +         ++K A++AMYHAK  G N  
Sbjct: 460 VAQKILKSLSVPFMVDSFELYITTSIGIALYPGDDENPDNLVKKADIAMYHAKGEGRNTF 519

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +      +   R++++  L  A++N E  + Y P + +  ++I  +EAL++W HP  G
Sbjct: 520 KFYVPKMDANADKRLLLETSLRKALDNEEFRVYYQPKVDITTKQITAMEALLRWQHPTLG 579

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            ++ SEF+ +AEE  +I  I  ++L         W +    PP+ + +N++        L
Sbjct: 580 LVAPSEFIPLAEETGLIVPIGEWVLRAACLQNRKWLEMGL-PPMKVAVNLSGYQFQQPNL 638

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++ +++ T   P  ++L  +ESV+M NP+ +  +L  +R +GI +++DDFGT  S L
Sbjct: 639 LDIIRTVLADTGLDPGLLELEITESVIMQNPDFAVAVLAEIRDLGIHISIDDFGTGYSSL 698

Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++L     +T+K + S +          AI  +II M  ++   +IA+ +  E  +  L+
Sbjct: 699 AHLKRFSINTLKIDKSFVRDVEINSADAAIATAIIAMGNSLNLKVIAEGVETEGQLTFLS 758

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              CD +Q    ++P+    +   L+ R  LV
Sbjct: 759 ENKCDEVQGFLFSTPMPSEDVADFLRGRTTLV 790


>gi|237746066|ref|ZP_04576546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacter formigenes HOxBLS]
 gi|229377417|gb|EEO27508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacter formigenes HOxBLS]
          Length = 1049

 Score =  569 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 158/610 (25%), Positives = 276/610 (45%), Gaps = 15/610 (2%)

Query: 354  LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
              +    R  N I        ++         ++  ++    F+   F   E+  L    
Sbjct: 440  SAILPLHRNGNVIGVMFFYSNVLNAFTESSQRLLLELVEDIDFALEHFEKEEQLQLSAQI 499

Query: 411  VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILD 469
               S + +   D     V        I G +     G   +      H  DR NF   + 
Sbjct: 500  FAQSSEGIMLLDPNCHIVMVNSAFTHITGYSEEETLGRNPKMLASGQH--DR-NFYATMW 556

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              +    GR Q E   R  D   +   + I+ M +S G +  YIG   D+TE+K++ E +
Sbjct: 557  EAIETE-GRWQGEVWNRRKDGSLYPEWLLIQTMRDSRGTLTHYIGTFTDLTERKETEERV 615

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LTG+PNR     R    + L+    +    +M +D+D +K +ND LG  VGD
Sbjct: 616  QWLAHFDPLTGLPNRTLLHIRSNLAISLAQRR-HEPLALMFLDLDNFKNVNDSLGHGVGD 674

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            ++L   ++R+   ++  D ++RL G+ F ++L    ++   A  A  +    A   N+  
Sbjct: 675  ELLKQFSQRLVNAVREQDTISRLGGDEFVLVLPG-TDTDGAAYLAERLLNIAARQYNIER 733

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707
             EI +T SIG A + +       + ++A+ AMY AK  G N    F           + I
Sbjct: 734  HEINLTVSIGIAMYPTDGTDFDTLWRSADAAMYRAKQSGRNDYCFFTTEMQARSARTLQI 793

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
               L  A+E ++  LVY P + L    IVG EALI+W HP++GN    EF+ IAE    I
Sbjct: 794  DNALRRALERNQFSLVYQPQLSLNTNRIVGFEALIRWTHPQFGNTPPDEFIPIAESNGQI 853

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I  ++L+   R +  W+D   +  + I +N+++       L E + A++ +   SP  
Sbjct: 854  IPIGEWVLKTAVRQLRLWQD-NGLKDVTISVNLSAVQFRHPRLPELVMAILEEAGVSPEC 912

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +E V M NP  +  ++  LRK GI +++DDFGT  S L+YL      ++K + S 
Sbjct: 913  LQLELTEGVAMENPLAAITVIDELRKKGIRISIDDFGTGYSSLTYLKRFNVYSLKIDRSF 972

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +       + +AI+ ++I +A ++    +A+ +  +  ++ L   GC  IQ  +++ PL 
Sbjct: 973  VQDLPNDTEDMAIVSAVISLADSLGMITVAEGVETKEQLEFLRSRGCTEIQGYYLSRPLQ 1032

Query: 946  FNSILKLLKE 955
             +++   +++
Sbjct: 1033 ADAVFSFIED 1042



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 7/108 (6%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRV 485
           +     +  I G          + W       D         ++S         + E   
Sbjct: 12  IHFNDKLCEIFGYTPEEFG--KKGWNELC---DTPCAEENRGIESLKRGDIDEFREEKAF 66

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           R  + +     +  R ++  +G     +    DITE+KK+   I   +
Sbjct: 67  RRKNGRNAIAEVHFRCVAKDDGAPDYLVVTVEDITERKKAQTEIYRLS 114


>gi|237807132|ref|YP_002891572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Tolumonas auensis DSM 9187]
 gi|237499393|gb|ACQ91986.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Tolumonas auensis DSM 9187]
          Length = 1098

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 147/567 (25%), Positives = 279/567 (49%), Gaps = 12/567 (2%)

Query: 403  DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDR 461
               + ++    + + +   D  R+ +     +  + G     + G   R +    H  D 
Sbjct: 526  QLRQAAIVFESTREGIVITDAERNIIKVNRALIDLFGYPENELLGQRPRIFHSGKH--DG 583

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              ++ +L +   +  G  + E   R  + +   M+  I P+ +SNG+IL YI I  DI++
Sbjct: 584  HFYQQMLQALDEH--GFWRGEMWNRRQNGELLPMMTSINPVCDSNGEILYYISIYTDISQ 641

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             K S   +   A  D LTG+PNR     +L + L  +  + + R  ++++D+D +K +ND
Sbjct: 642  LKDSEARLEHMALHDPLTGLPNRAMLGQKLDSALQHAMLN-STRVALLMLDLDHFKNVND 700

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              G   GD++L  ++ R+ + L+  D++ RL G+ F ++L +  +   ++  A  +  ++
Sbjct: 701  SFGHHFGDELLHQVSARLKQQLRESDVVCRLGGDEFTVLLQNNPSPDDVSLLAERIIHAL 760

Query: 642  AMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
              P  L   RE+ +  SIG + +     T+ E+++ A+ AMY AKH G +    F     
Sbjct: 761  HQPFLLSNAREVMIGTSIGISLYPEHGSTAEELMQQADTAMYRAKHDGRDGYRYFSEELF 820

Query: 700  -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+ +++ L  A+   E  + Y P I +   +I+G EAL++WD P++G I  SEF+
Sbjct: 821  LKAKARLELEQRLHRAITGQEFKVFYQPQISIKTNQIIGAEALLRWDDPEYGLIPPSEFI 880

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             +AEE  +I+ I  ++L    R    W DQ ++PPI + +N++   L   ++ + +  ++
Sbjct: 881  SVAEETGLIQNIGEWVLYETCRQGRDWLDQ-HLPPINLAVNLSPLQLHHGDVRQLIGTIL 939

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
              + +    ++L  +ES +M   E +  +L  LR+ GI + +DDFGT  S L+YL   P 
Sbjct: 940  HNSGFPAHHLELELTESALMEQQEETVKILQGLRQQGIRIAIDDFGTGYSSLAYLKQFPL 999

Query: 879  DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K +   +         + I  +I+ M  ++  T++A+ +  +  ++ L + GCDY Q
Sbjct: 1000 DVLKIDKRFVEDIPHERDDMEIAATIVAMGHSLRLTVLAEGVETKAQLEFLEQQGCDYYQ 1059

Query: 937  DSHVASPLGFNSILKLLKERFPLVKNT 963
                + PL      +LL ++ P V   
Sbjct: 1060 GYLYSMPLPAEEFAQLLSQQNPPVTQA 1086



 Score = 89.6 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 10/207 (4%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
               G++ A   +       I  + L+       + D   P +   L  +V+ + + +  
Sbjct: 333 ATRAGFQSAGYFVIREKGQVIGALNLYA-----DEPDFFSPEVRATLNDMVMDVTYALDM 387

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASGSMH 446
            + A    +       +  +  +  S  I++ W           + ++    G  +    
Sbjct: 388 LLQAKERAN--ALIALQNAAEVIDASPTILFRWQPNSSWKMEYVSSNVQR-WGYQADDFI 444

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    +H  D       +   +  R      E RVR A  ++ W+   +    +  
Sbjct: 445 NGKLTMSDLLHPEDLQRVWAEVIHHIETRHKEYILECRVRTAAGEYLWVENHVTTSFDRK 504

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
           G   R+ G+  DIT+QK +   +   A
Sbjct: 505 GKPQRFTGVMTDITQQKNNELQLRQAA 531



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 99/355 (27%), Gaps = 32/355 (9%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           L  AW     + +           + +   +        + + +       QH +     
Sbjct: 23  LSVAWFYFSGYSLSPSATKGAPPFDSLTFWVSLTTFITGITVGVFFLLVWRQHYMQHRQA 82

Query: 397 SQGIFSDGERQS---LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                ++ +R       +   G  +   +     +     ++T+  L+   +        
Sbjct: 83  LSRRVAEKDRLLHHFFDLPLLGMAI-TTNANGSWLRFNDHLSTLFNLSRDELAELNLL-- 139

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H +DR   R              + E R    D    + ++  R + + +G I   I
Sbjct: 140 ALTHPDDRPYDRQEWMRMQDGESQGYRREKRFVRPDGSMLFALVDTRCIRHPDGSIDCMI 199

Query: 514 GIANDITEQKKSLEGILCNAF-QDNLTGIPNRQSFLDR-----LTTILDLSATDDNLRPT 567
            +  DI+ +K S   ++      D L+ + N+     +     L  I  ++  +      
Sbjct: 200 NVIEDISARKNSELRLIRQNNLYDMLS-LTNQAIVRSQDRLVLLQNICRIAVRNGGFVFA 258

Query: 568 -VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V   + +    +    G   G            + ++      RLS      +L+   +
Sbjct: 259 WVSATEQEHSSHV-ASYGHDNG----------FLQFIRDYQQQHRLSAGSHAPVLMP-TD 306

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTA---SIGFASWTSSKITSSEMLKNAE 678
               A+  + +   +         E    A   S G+            +   A+
Sbjct: 307 RAIAAESHVILNHFLTDESVQPFHEAATRAGFQSAGYFVIREKGQVIGALNLYAD 361


>gi|322421927|ref|YP_004201150.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320128314|gb|ADW15874.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 715

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 164/617 (26%), Positives = 285/617 (46%), Gaps = 23/617 (3%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSDGERQSLAVLGSGDIV 418
            + I +    G    I   I + +++H     L +    + +     R + A   +    
Sbjct: 94  THAIEKAYHAGATDFITKPIHWAILRHRVRYMLRSSKAMRDLRVSEARLNNAHRIAHMGS 153

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W+WDI+ D+   + +I TI  + S         +L  IH  D++ F    +     ++  
Sbjct: 154 WEWDILNDKFYWSQEICTIFAVDSVGFDSCYPAFLNCIHPLDKELFNKSFEDACASKK-P 212

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +  +  +     Q  +         +  G ++R  G   DITE+K+  + +   A+ DN+
Sbjct: 213 ISIDHNILLPGGQERFCHTEGEVSVDEFGRVMRISGTIQDITERKRIEDQVRSLAYYDNI 272

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR  F + L   L  +      +  V+ +D+D++K+IND LG A GD++L  +  R
Sbjct: 273 TGLPNRVLFGELLDRALTFARRYHR-KVAVLFLDLDRFKEINDTLGHAPGDELLKEVAER 331

Query: 599 IGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +   ++  D             +ARL G+ F II+    N+  +      + K +A P  
Sbjct: 332 LKHSIRGYDSLWQGGGVEESTPVARLGGDEFTIIMEDIQNTKGVIASTQRILKLLAEPFL 391

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           L + E+ VTASIG + +      +  ++KNA+ AMYHAK  G N+ + F    +    +R
Sbjct: 392 LGDVEVCVTASIGISIYPDDGEDAMTLVKNADTAMYHAKREGRNNAQFFMQALNDAACER 451

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           ++++  L  A+ N E  L Y P +      IVGLEALI+W  P+ G +    F+  AEE 
Sbjct: 452 LLLERQLRKALANEEFILYYQPQVDATSGRIVGLEALIRWQSPELGFVPPVNFIPFAEES 511

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  I+ ++++   R I +W  +   PP  + +N++    L   L E +   +      
Sbjct: 512 GQIMLIDEWVVQAACRQIGAWIARGITPP-RVAVNLSGCHFLKRNLVEMVSDCLRNFGIP 570

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +++  +E V+M + E++   L  L+ +G+S+++DDFGT  S LSYL   P DT+K +
Sbjct: 571 PRYLEVELTEGVIMRDVEQATASLAELKAMGVSVSIDDFGTGYSSLSYLKRFPIDTLKID 630

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +T         AI  +II MA ++   IIA+ +     +  L    C  +Q      
Sbjct: 631 RSFITEVTKDADSAAITTAIISMATSMRLDIIAEGVETMDQMGFLLTHSCAVMQGYLFCR 690

Query: 943 PLGFNSILKLLKERFPL 959
           PL    + + L E  P+
Sbjct: 691 PLPPEEVARFLTEGLPM 707


>gi|83646741|ref|YP_435176.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634784|gb|ABC30751.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 637

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 147/637 (23%), Positives = 291/637 (45%), Gaps = 17/637 (2%)

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKR-----LDNDIIQPALVGGLVLIVILIGFT 385
           M+ +     ++P  +L+      + +A         L   I+    +  +   + LI   
Sbjct: 1   MRKHGEFWDVLPISLLMLGSVATIHLASLYYFEGESLSWPILTTLSIAVIFAFLSLIQIR 60

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + + A            ++ S AV  SG  +   D +            + G      
Sbjct: 61  LNRQLAAKVKALHERDFKLKKLSSAVTNSGCSIIITDRLGRIEFVNNKFVNVTGYGQEEA 120

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G    +L  ++  D D      +            + E   R  D    W  + +  + 
Sbjct: 121 RGR---FLDILNPKDMD-AEKPQEQIWESDILYDGWEGEVLSRRRDGYDFWWAVTVSTVC 176

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S+  +  Y+    D++E K++   +   A  D+LTG+ NR+ F+DRL   +  ++ D  
Sbjct: 177 DSDNTVTNYVISGVDVSELKEANRKMQQMALYDSLTGLANRRLFVDRLEQAVKAASRDRK 236

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ +D+D++K+IND LG   GD +L ++ +R+   ++  D +ARL G+ F ++L  
Sbjct: 237 -QIALLFLDLDQFKRINDTLGHDAGDSLLQTVAQRLKNCVRAKDTVARLGGDEFTVLLTD 295

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +   A  + K++  PI L + E+ V+ SIG     +    +  ++KNA+LA+Y 
Sbjct: 296 IVDTFSVTPVATQILKALKEPIKLKKHEVIVSTSIGVTLAPTDGANADVLMKNADLALYR 355

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G +    +          +++++++L  A++  E  L + P + L   +IV +EAL
Sbjct: 356 AKEHGRDRYHFYTEELNAHALKQLLMEQELRHALQFEEFTLGFQPQVNLTTGKIVSVEAL 415

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +    F+ +AEE  +I  I  ++L+     +   +D      I I +N++
Sbjct: 416 IRWHHPSKGLVMPDSFISVAEETGLINPIGRWVLKNACMQMKMLQDLTG-SAIKIAVNLS 474

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++   D +L + ++  +++T   P  ++L  +ES++MG+ +     L RLR+ G+SL +D
Sbjct: 475 ARQFDDPKLEQSIEEALNETGLEPEWLELEVTESMLMGDIQAVTNKLKRLRQTGVSLAID 534

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S LSYL  +P + +K +   +         + I  +II +A  ++  ++A+ + 
Sbjct: 535 DFGSGYSSLSYLKKLPVNALKVDREFVRDIPEDSNDMEITSAIIAVAHKLQLKVVAEGVE 594

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                + L    CD+ Q    + PL F  +   L E 
Sbjct: 595 TAEQKEYLLANQCDFAQGYFFSKPLSFEDLYIYLNEH 631


>gi|119944868|ref|YP_942548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119863472|gb|ABM02949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
          Length = 954

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 153/584 (26%), Positives = 286/584 (48%), Gaps = 8/584 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LAS 442
           T + ++ A   +   +    ER +L    + + +WDW+I ++ +  +P    +LG  +  
Sbjct: 366 TSLDNLEARELYENALRESEERYALVANATNEGLWDWNITKNEMYFSPRFFALLGKNVDE 425

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            S    I +W   IH  D    ++ ++  +  +    Q E+R+   D ++ W++ R   +
Sbjct: 426 NSSLNTIEDWYKLIHPKDIILVKSAINDCLNGKTAHFQCEYRLLHHDGRYRWILSRGLAI 485

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +S+G+ +R     +DI++Q+ + + +  +AF D+LTG+ NR  F+  L  +L   + + 
Sbjct: 486 WDSSGEAIRMAASHSDISDQRDAKDKLRYDAFHDSLTGLYNRSWFVSYLQELLSGHSRNK 545

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           NL   V+ +D+D++K +ND LG A GD +L+ +  R+ + L+  D+LAR  G+ F I+L 
Sbjct: 546 NLNFAVLFLDLDQFKLVNDTLGHAAGDKLLIYVAERLKKCLRETDMLARFGGDEFVILLK 605

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S+ N  +    A  + + +++  ++    I   ASIG     +    + EML++A++AMY
Sbjct: 606 SDENY-RFIQIAERIIEQLSLSFSINNNYIHTGASIGITLLETGYQDAYEMLRDADIAMY 664

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    F           +  ++ L  A+EN EL L Y PII L D  + G EA
Sbjct: 665 RAKLNGKNCHIVFDEEMRSQLLKQVDTEKLLRQAIENDELTLYYQPIISLSDGRLTGFEA 724

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILIN 799
           L++W++P  GN+S   F+ +AE    I  +  ++ E     + +W+++      + + IN
Sbjct: 725 LLRWNNPILGNVSPDVFIPLAEANGTIIQLGQWVFESAFIQLKAWKEEFTGFDNLVLSIN 784

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++    LD    +    L+       S I +  +E+ ++     +  ++   +K GI + 
Sbjct: 785 MSPVQFLDKLFLKNFPKLMDTYNIKGSEIAIEITETAIIHKKALAIKVINDFKKYGIHIH 844

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S +S+L     D +K + S +   G   K   ++++II  A N+     A+ 
Sbjct: 845 LDDFGTGYSSISHLVGFQIDLIKIDRSFIELLGVNSKEDKLVQAIINFAHNLGIKCTAEG 904

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           I      + L+   CDY Q   +A P   + + + ++E     K
Sbjct: 905 IEEAAQQRLLSIANCDYAQGYFIAKPAPASQLTEFIREHLSRSK 948


>gi|71906314|ref|YP_283901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71845935|gb|AAZ45431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 925

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 152/561 (27%), Positives = 271/561 (48%), Gaps = 11/561 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462
            +  ++    S + +   D     + T P    + G     + G   R         +  
Sbjct: 347 LQLMAMVFSNSNEAIIVTDASNRIIATNPAFTCLTGYQPDDVIGKNPRILSAGTTPTE-- 404

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              + + + + +R G  Q E   R  + + +   + I  + + +G I  +IG   DI+E 
Sbjct: 405 -VFSDMWTCL-HREGAWQGELWDRKKNGEAYPKWLSISLVRDEDGQIRNHIGSFIDISEL 462

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K + E I   A  D LT + NR S  ++L   L     +  ++  +M+ID+D++K IND 
Sbjct: 463 KATQERIRHLAHHDTLTNLANRFSLHEKLAQALAFCKRN-RMQLALMLIDLDRFKTINDT 521

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD++LV + +R+   ++  DI+ARL G+ F I L    +    A  A  + + I+
Sbjct: 522 LGHQAGDELLVQVAKRLSHAVRESDIVARLGGDEFVIALPGIGSPADAAHLADDITREIS 581

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  +E+  + SIG   +        ++LKNA++AMYHAK  G  + + F      +
Sbjct: 582 APYLIKGQELRTSPSIGICVYPGDGSEIGDLLKNADVAMYHAKANGRGNYQFFTEDMNIA 641

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 ++ DL LA+   E  L Y P + L    IVG+EALI+W HP  G +S ++F+ I
Sbjct: 642 TTERMCLESDLRLAITRREFLLHYQPQLDLRSGTIVGVEALIRWQHPTRGLVSPADFIPI 701

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  MI AI  ++LE   R +  W+++  +  + + IN+++   LD  L   +  L++ 
Sbjct: 702 AEESGMIAAIGDWVLEEACRQLKVWQNR-GITHLRMSINLSAGQFLDKTLPARIHELLAA 760

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              S  R+ L  +ES+ M +P+ S  ++  L   G++L++DDFGT  S L+YL  +P  T
Sbjct: 761 NDLSADRLDLEVTESMSMASPDESISVMKTLSSSGLTLSIDDFGTGYSSLAYLKLLPIHT 820

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +           I    + +A  +   ++A+ +  E  +K L  +GC+ +Q  
Sbjct: 821 LKIDRSFVKDIESDPNDADICDVTVLLAHKLGLEVVAEGVETEAQLKFLLSIGCEKVQGY 880

Query: 939 HVASPLGFNSILKLLKERFPL 959
            ++ PL  +   + ++   P+
Sbjct: 881 LISKPLPADQAERFIRNNPPM 901



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           I+ +       + + +  +R       + + ++        +   P +A + G   + ++
Sbjct: 206 IEDISVRRTTLEALEAAEQRYRNIFEHASEGIFQSTRDGHYLAANPALAKLYGYDNAQAL 265

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              + +    ++   N R+ F     + +      L +E  V   D    W+      + 
Sbjct: 266 MTDLADIERRLYVQPNRREEFL----TLIEKNGAILNFESEVYRRDGSRIWISENAHVVF 321

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              G+ + Y G   DI+E+K++   +   A 
Sbjct: 322 GPQGEFICYEGTVQDISERKRTEAHLQLMAM 352



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           D     V  +     + G AS  + G    +W    H  DR   R  ++  +     R  
Sbjct: 113 DADWTMVFVSDGCQELSGYASSEILGKTGVSWEEITHPQDRGRVRACIEDAI-GSGQRFA 171

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            ++R+     Q  W+I R   + +   + +   G   DI+ ++ +LE
Sbjct: 172 VQYRIVCKSGQVKWVIERGVAIRDELDESV-IEGFIEDISVRRTTLE 217


>gi|77165089|ref|YP_343614.1| multisensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254433953|ref|ZP_05047461.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883403|gb|ABA58084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosococcus oceani ATCC 19707]
 gi|207090286|gb|EDZ67557.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 944

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 155/576 (26%), Positives = 272/576 (47%), Gaps = 16/576 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +L   +  Q   +   R  L       + + V   D     V        I G+A   + 
Sbjct: 371 ILDAYHNDQRRKNAESRLRLTAKVFESTVEGVIITDTKAYVVDVNEAFTHITGIARSEIM 430

Query: 447 GPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G   + L             R  + S      G+ Q E   +  + + + + +    + N
Sbjct: 431 GRHLSTLQTKQEKPISFQRVRHAIKS-----TGQWQGELWSQRKNGEIYPLWVTANAVRN 485

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S  +I  ++ I +DIT +K++ + +   A  D LTG+PNR  FLDRL   +  +    + 
Sbjct: 486 SKEEITHFVAIFSDITLRKQTEQRLYYLAHHDALTGLPNRSLFLDRLEHAIHHAQRHHH- 544

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  V+ ID+D++K IND LG  +GD +L  +  R+   ++  D +ARL G+ F +I+ + 
Sbjct: 545 RIAVLFIDLDRFKFINDTLGHPIGDILLKQVAERMRLNIRAEDTIARLGGDEFTVIIENF 604

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            ++  I+     +  +   P N+   E+ V+ASIG + +      +S +L+ A+ AMY A
Sbjct: 605 TDTSAISLITQKIISACEKPFNIKGNELFVSASIGVSLYPEDGHEASMLLQRADAAMYQA 664

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG +  + F        ++++ +K  L  A+   E  L Y PII +    IV +EALI
Sbjct: 665 KKRGKSCCQFFTTEINTAATEQLALKNLLRRALARKEFQLYYQPIINMESGAIVSVEALI 724

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G IS + F+ +AEE  +I  +  ++L+        W       P+ I IN+++
Sbjct: 725 RWVDPELGLISPNTFIPLAEENGLILPLGEWVLQTACTQAKIWNQSNPY-PVRIAINLSA 783

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L   +  E +  ++ KT +    ++L  +ES+++   E S   L  L+K+G  L+LDD
Sbjct: 784 RQLEQTDFSERVSEILKKTPFPTDHLELELTESMLINRMESSLKTLNTLKKMGCRLSLDD 843

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P DTVK + S + G        AI  ++  MA +++  +IAK +  
Sbjct: 844 FGTGYSPLAYLKRFPIDTVKIDRSFVQGISIDPDDAAITTAVTTMAHSLKRAVIAKGVET 903

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L  +  D  Q   ++ P+    + + L+E+
Sbjct: 904 REQLNFLNEIKVDEAQGYFISYPVPAEELTQKLREK 939


>gi|237654383|ref|YP_002890697.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237625630|gb|ACR02320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 748

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 153/575 (26%), Positives = 266/575 (46%), Gaps = 14/575 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            A    SQ +          V  S D+++  D         P I  +LG    ++     
Sbjct: 160 RANKLMSQRLKDSERLHRYLVESSPDMIFTLDGSGRFTYINPRIKALLGYDRSALVKRP- 218

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-----DNQFHWMIIRIRPMS-- 503
            +   +   D D   T+L             E R+R+      +     + +   PM   
Sbjct: 219 -FTTLVMPEDLDRIDTLLSQPSSLPGESFHVELRLRSRRDGGGEGGSVTVSLTGIPMVTQ 277

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++  ++   G+A DI+E+K++ E I   A+ D LT +PNR  F DRL   +  +     
Sbjct: 278 ENDRRVIGLYGVARDISERKRAEEIISFQAYHDQLTHLPNRVLFKDRLELAIAQAQRRTG 337

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               VM IDID++K +ND  G A GD +L ++  R+   L+  D LARL G+ F ++L  
Sbjct: 338 A-LAVMFIDIDRFKLVNDTFGHAEGDLLLRAIASRLSATLRRGDTLARLGGDEFTVLLPD 396

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            N        A  +  ++A P+ L + E   T S+G A +     T+ ++ ++A+ AMY 
Sbjct: 397 INQPEDAEVIARKVLDALATPVRLSQGEFRATVSVGIALFPRDGTTAEDLTRHADAAMYQ 456

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K  G N    F    ++   DR+ ++ DL  AV   EL L Y P + L    IVGLEAL
Sbjct: 457 VKRSGKNAFRFFDPELNTRHRDRIALENDLRGAVARGELDLHYQPQVSLATRGIVGLEAL 516

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G I  + F+ +AEE+ +I  I+ ++LE     +  W+ +    P  + IN++
Sbjct: 517 LRWNHPGLGAIPPATFIQVAEEVGLISEISNWVLETACAQLARWQAEGVGAP-RVSINLS 575

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + D    ++   ++A + +   +PS +++  +E ++M +       +  LR+ GIS+ +D
Sbjct: 576 ACDFQRGDVVGRIRACLDRHGVAPSCLEVEITEGLMMDDTADIAAKVRALREAGISVAID 635

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DFGT  S L+YL   P  T+K + S +          I+ +I  +A+  +  ++A+ +  
Sbjct: 636 DFGTGYSALAYLQRFPVSTLKIDRSFVRDLEGPMTNPIISAITGIARGFDLDLVAEGVEN 695

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 L  +GC+ +Q    A P     +   L++
Sbjct: 696 LEQADALRALGCEVMQGYLFARPAPAGEVPGWLRQ 730


>gi|163849063|ref|YP_001637107.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222527033|ref|YP_002571504.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Chloroflexus sp.
           Y-400-fl]
 gi|163670352|gb|ABY36718.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450912|gb|ACM55178.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus sp. Y-400-fl]
          Length = 695

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 139/576 (24%), Positives = 266/576 (46%), Gaps = 6/576 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               + ++      Q +          +  S D +   D        +P   T+LG  + 
Sbjct: 118 LRERRLIIERQQAEQALRRSERLFRAMIERSSDAISIVDRDGFIRYASPSTQTLLGYPTE 177

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                      +IH  DR+  + +    +         EFR R A+  + W+        
Sbjct: 178 GFLTQPVEGFAFIHPADRERVQRLFLDIIQQSGASAMVEFRARHANGGWRWIEATASNWL 237

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +  +   I    DITE+K     +      D LTG+PNR    DRL   +  S  +  
Sbjct: 238 D-DPAVQGVIVNYRDITERKLMELRLQHGVLHDALTGLPNRVLLSDRLAQAIKRSQRNPQ 296

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D +K IND  G  VGD  LV+   R+   L+  D  ARL G+ F I+L  
Sbjct: 297 YHFAVLFLDLDHFKVINDSFGHPVGDRFLVTAASRLHSCLRSIDTCARLGGDEFVILLDD 356

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++   +   A  + + +++P+ +  + +  + SIG    ++     +E+L++A++AMY 
Sbjct: 357 IHSLDAVVQVARRIIQQLSLPVEIDGQMLHSSVSIGIVFGSAEYNDPAEVLRDADIAMYR 416

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G +  E F  +       R+ ++ +L  AV   E  + Y PI+ +    ++G EAL
Sbjct: 417 AKASGKSRYEVFHPAMREAAQARLALENELRRAVAQREFIVYYQPIMNISSGGLIGFEAL 476

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINI 800
           ++W HP  G ++ + F+ +AEE+ +  AI   +LE + + + +W+    +   + + +N+
Sbjct: 477 VRWQHPTRGILTPAAFLDVAEEVGLGDAIGWQVLEHVCQQLATWQHTFSHAAHLSVSVNL 536

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++  +  +L   +  L+++    P+ +KL  +ES +M   + +  +L RLR  GI + +
Sbjct: 537 SARQFMQPDLYARIVQLLTQYNIPPNCLKLELTESALMEYSQEAAAVLARLRSYGIQIAI 596

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG   S LSYL  +P D +K + + +    +     AI+ +I+ +A+++   ++A+ +
Sbjct: 597 DDFGVGYSSLSYLIQLPIDQIKIDRNFIIQLDQAHHSQAIVSAIVNLARSLNLEVVAEGL 656

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                +  +  +GC Y Q   +  PL      +LL+
Sbjct: 657 ETAEQVDRMRTVGCHYGQGYLLGYPLPAAEASRLLQ 692


>gi|218885318|ref|YP_002434639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756272|gb|ACL07171.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1076

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 158/577 (27%), Positives = 276/577 (47%), Gaps = 11/577 (1%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444
            ++          Q +     R       + + ++        ++  P +A ILG      
Sbjct: 488  LMLENAERRTVEQALRRAEARFRGIFEHALEGIFQSTPEGRFLSVNPAMARILGYEGVQE 547

Query: 445  MHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +   + +    ++     RD F   ++           +EFR R       W+ +  R +
Sbjct: 548  LLEGVESIGDGVYADPARRDEFVARMEEHGQVNA----FEFRGRRKGGDLIWLSVNARRV 603

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              ++G  + Y G   D+T   +S E +   AF D LTG+PNR  F DRL   L  +A   
Sbjct: 604  PGADGATMYYEGFLEDVTMGHESRERLEHQAFHDPLTGLPNRVLFHDRLQMALKRAARRR 663

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            N    ++ +D+D++K IND LG  VGD +L  ++ ++ E ++  D +AR  G+ FG++L 
Sbjct: 664  NYTFAMLYLDLDRFKVINDSLGHDVGDALLKVVSAKLRECVRDVDTVARFGGDEFGVLLE 723

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                       A  +R  +A P+ +   E+  TASIG    T    T  E++++A+ AMY
Sbjct: 724  ETPTRGTAVRVARRIRAHLAEPVRIGPHEVFTTASIGIVLRTDQYSTPEELVRDADTAMY 783

Query: 683  HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK +G +  + F           + I+ DL  AVE  E+ L Y P++ L D  + G+EA
Sbjct: 784  RAKEQGQSRFKVFNKRMREEALRLLTIETDLRRAVERQEMRLHYQPVVALEDGGLHGVEA 843

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++W   + G+IS +EF+ +AE+  +I +I  F LE +   +  W +    PP  + +NI
Sbjct: 844  LLRWTRTEGGDISPAEFVPVAEDTGLITSIGAFALEEVCLQLRRWNEAGLPPPGVVHVNI 903

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            + +  +   L   ++ L+ +T   P  ++   +ESV+M +  ++  ++ +LR +GI L L
Sbjct: 904  SGRQFMQPGLPHAVEMLLERTGTDPRSLRFEVTESVLMRHGSQAITVMAQLRDLGIRLCL 963

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S L YL  +P D++K + S + G    R   AI+RSI+ +  ++   I+A+ +
Sbjct: 964  DDFGTGYSSLGYLKRLPVDSIKIDRSFVAGLEHDRDGQAIVRSIVSLGLHLGLEIVAEGV 1023

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  + L  +GC Y Q    A P+  + +  +L  
Sbjct: 1024 ETPTQAEMLASLGCRYAQGFLYAPPVSADDLAAMLDA 1060


>gi|269925562|ref|YP_003322185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermobaculum terrenum ATCC BAA-798]
 gi|269789222|gb|ACZ41363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermobaculum terrenum ATCC BAA-798]
          Length = 1785

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 146/637 (22%), Positives = 288/637 (45%), Gaps = 13/637 (2%)

Query: 329  HGMKGYERAVLLIPA---WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
                 Y   +  + +      I +   G        L    ++P +     +  +     
Sbjct: 1150 ASFNIYPPEIRYLQSGVIRSAISVGIGGQSSPY-GLLCAYSLEPRIFSPDDINFLQSVSN 1208

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGLASG 443
            ++   +     +Q +     R    V     +  + +  +       +P +  +LG    
Sbjct: 1209 ILAAAIEYRRAAQDLMRAEARYRKLVEQIPAVTYIEEMGMRGVVSYISPQVEDMLGYTPE 1268

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                    W   IH +D ++  T ++          + E+R+ +   +  W+      + 
Sbjct: 1269 EWTSNPDPWSRIIHPDDYEDVATSMEKA-EELGIPFRKEYRMISKSGEIVWVRDEAVIVR 1327

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++ G  L + G+  +IT++KK  + +   AF D LTG+PNR  F+DRL   L  +   ++
Sbjct: 1328 DAEGQPLFWQGVLVNITDKKKLEDKLAYQAFHDALTGLPNRALFMDRLKGALARAKRYNS 1387

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                V+ +D+D++K +ND LG   GD +L+ +  R+  +++  D +AR  G+ F I+L  
Sbjct: 1388 C-CAVLFLDLDRFKHVNDSLGHQYGDQLLIEVGNRLLSVVRSADTVARRGGDEFTILLEP 1446

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                      A  + K +  P  +  +E+ ++ SIG A        + E++ NA++AMY 
Sbjct: 1447 ICELEYAKQVAERVIKELEKPFLINGQELYISTSIGIALSNE-YSDAEELIHNADVAMYW 1505

Query: 684  AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK RG    E + +S       ++ ++ +L  AV+  E  LVY P++RL D+E+V LEAL
Sbjct: 1506 AKSRGRARYEVYDLSMSTFTLEKLKLESELRRAVQREEFSLVYQPVVRLRDKEVVALEAL 1565

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W HP+ G +   +F+   E+  +I  +  +ML  + R    W+ +       + +N  
Sbjct: 1566 LRWHHPERGLLLPDQFLKELEDTGLIMPLTDWMLREVCRQHKEWQKRVAGELPLVSVNFT 1625

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            ++      + E + +++     SPS ++L  +E+V M +   +   +  L+ +G+ L LD
Sbjct: 1626 ARQFQKATMLEDLASILQDMDVSPSCLQLEITETVAMDDAASTARTMKGLKDLGVKLALD 1685

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            D GT  S LSYL   P D +K + + + G        AI+ +++ +AK++   + A+ + 
Sbjct: 1686 DVGTGYSSLSYLRKFPLDVLKVDRTFVMGLGVDPDSTAIVHALVMLAKSLGMLVTAEGVE 1745

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++ +  L+ +GCD  Q    + P+  + I  +L   
Sbjct: 1746 KQVQVDALSTLGCDLAQGYFFSRPMEPDRITDILVRH 1782



 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  I L      + DN+ +Q  +   ++     I     + V      ++ +    ER 
Sbjct: 457 VVGVITLSKVGLNQFDNEDLQLLV---ILADQAAIAIENAKLVEKLSLEAEALRKSEERN 513

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRT 466
            L    + D +WDWD+  +R+     I  + G  +       I  W    H +D +  R 
Sbjct: 514 QLISRATNDAIWDWDLSTNRIIWNDAIQRLFGYEADHEFETSIEWWEERCHPDDIERLRE 573

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            L   +         E+R R AD  + +++ R   + +++G  +R +G   DIT + ++
Sbjct: 574 SLYGAINSDADVWAEEYRFRKADGSYAYVLDRGYIVRDASGKAIRAVGSMLDITHRIEA 632



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 2/155 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            +     +  +      ++ +    ER       S   +   D     + T   +  ILG
Sbjct: 616 AIRAVGSMLDITHRIEAAKALRESEERFKAIFEDSAIGMALIDQEGRILKTNKALTKILG 675

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                +     N+L  +H +     R         +      E R    D    W  + +
Sbjct: 676 YTQNDLIEK--NFLELVHPDHESTLRGRFTRIFSGKNTHYHVEQRYIHKDGHEIWGNLTV 733

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             + + +GD+   + +  DIT +K++   IL  A 
Sbjct: 734 SAIRSHSGDVDLAVCMLEDITSRKQADSRILFQAR 768



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 53/179 (29%), Gaps = 16/179 (8%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              I   L    I+       + + +L   T  +   +   F   +          +   
Sbjct: 724 GHEIWGNLTVSAIRSHSGDVDLAVCMLEDITSRKQADSRILFQARL----------LDQV 773

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVG 473
              V   D+    V      + + G       G  +      I  +  +N R ++   + 
Sbjct: 774 PVAVIACDMQMRVVHWNSAASDLFGYTPQEAIGKEVFELASTI--DKSENIREVIQVVLR 831

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               R + +F +           + I  + +    ++  + +  D+++QKK  E +   
Sbjct: 832 EGSWRGEVDFPLEDR---VVPAQVEISAVRDKRRMLVGLVAVIVDLSDQKKVEERLRRQ 887


>gi|120553189|ref|YP_957540.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120323038|gb|ABM17353.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 890

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 147/565 (26%), Positives = 275/565 (48%), Gaps = 13/565 (2%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDW--DIVRD--RVTTTPDIATILGLASGSMHGPIRNWL 453
           +      +    A+  S + +     D  RD   +      + + G +   + G    +L
Sbjct: 328 ESRARKLQLYDRAIEESSNGIVICLADKTRDNPVIYANRAFSIMTGYSHDEIIGLSPRFL 387

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +  +        L + + +  G  +   R    D    W  + +  + N +G+I  +I
Sbjct: 388 --LANDLAQPGLERLRNCMRH-GGSARAILRNYRKDGSLFWNEVALAAVHNEHGEIAHFI 444

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            + ND+T++K+    +   A  D+LTG+PNR    DRL   +  +   ++ +  V+++D+
Sbjct: 445 SVFNDVTDRKRYEAALEYQANHDDLTGLPNRNLLRDRLEHAITKATR-EHTKLAVLLLDL 503

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K++ND LG  +GD ++  +  R+ + ++  D +ARL G+ F I+     +    A  
Sbjct: 504 DQFKRVNDGLGHKIGDTLIQRVASRMSQCVRDSDTVARLGGDEFMILSTDIRDERAAATL 563

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + +     + +   EI  +ASIG A +        E+ +NA+ AMY AK  G N  +
Sbjct: 564 AQKLLRQFRQKVAINGHEIIASASIGIAMFPKDGDNGDELFRNADTAMYRAKDVGRNGFQ 623

Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +   +++   +R+ +++ L  A+   +L L Y P + L    +   EALI+W HP+ G 
Sbjct: 624 FYSAEMNNRMRERLYLEQSLRNAIGLHQLSLWYQPKLDLASGSVKSAEALIRWRHPQLGM 683

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  +F+ IAEE  +I  I  +++E  +R +  WRDQ     I + INI++  L   +L 
Sbjct: 684 ISPGDFIPIAEETGLILPIGAWVIEEASRQLAKWRDQE-NQDIRVAINISAYQLSHGKLT 742

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +   +      P  + +  +E+ +M   +++   L  LR++GI + LDDFGT  S L+
Sbjct: 743 DQVIQALDSLGLDPQSLTIEVTETAIMPQMDKAVCELQSLREMGIRVALDDFGTGYSSLT 802

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P D +K + S ++     E+  AI+++II +A N+  T++A+ +  E  ++ L  
Sbjct: 803 YLKRFPIDILKIDRSFVSDIADDEESGAIVKTIINLAHNLNMTVVAEGVETEAQLEFLRT 862

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
            GCD +Q  +   PL     L+ L+
Sbjct: 863 NGCDEVQGYYFCKPLPSEECLEFLR 887


>gi|253701315|ref|YP_003022504.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
 gi|251776165|gb|ACT18746.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
          Length = 704

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 150/588 (25%), Positives = 288/588 (48%), Gaps = 23/588 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++G+ V   + A+G   Q +       + A   +    W+WD+    +  + ++ +I  +
Sbjct: 119 VLGYRVSYMLRASGALEQ-LRESRAGLAHAQSLAHIGSWEWDLATGEIRCSEEVYSICSI 177

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     L  +H  D    +  ++  +  +R  L +++R+     +   +   + 
Sbjct: 178 DRSLKGGNPI--LDPVHPLDLGFVQGAIEEAI-GKRAPLSFDYRITLGAGE-RTLHAELV 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G+ +   G   DITE+K + E I   A+ D LTG+PNR+ FL +L   L  +  
Sbjct: 234 TVLDEQGEPVCLTGTIQDITERKHAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANR 293

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------- 611
            D +   V+ +D+D++K +ND LG  VGD +L  +  R+   ++  D LAR         
Sbjct: 294 HDRM-LAVLFLDLDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSL 352

Query: 612 ---LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              L G+ F I+L    +   +A  A  + +++++P +L  +E+ V+ SIG + +     
Sbjct: 353 VSRLGGDEFTIMLCDIEHFQDVAKIARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDAT 412

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
           T+S++++NA+ AMY AK +G N  + +  S          ++  L  A++  E  + Y P
Sbjct: 413 TASDLIRNADGAMYQAKEQGRNGYQIYDESMNAKALERIILESQLHKALKEEEFTVYYQP 472

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +      +VG+EAL++W+  + G +    F+ +AEE+ ++  I+ +++    R    W 
Sbjct: 473 QVSSQTGLVVGIEALVRWNSKELGLVEPGRFLPLAEEIGLVIQIDQWVMREACRQHKLWL 532

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D    PP+ + INI+ +  + NEL E + +++ ++   P  ++L  +E V+M + ER+  
Sbjct: 533 DAGL-PPVTLAINISGQQFMKNELLETVTSVLKESGLDPGLLELELTEGVLMAHTERTVK 591

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            L  L+ +G+ L +DDFGT  S LSYL   P D +K + + +          AI  + I 
Sbjct: 592 TLQALKGMGVRLAIDDFGTGFSSLSYLKRFPLDVLKIDRTFINDITTDPDDAAITLATIE 651

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           MA  ++  +IA+ +  +  ++ LT+ GCD  Q    + P+    + +L
Sbjct: 652 MAHTLKLKVIAEGVETKPQLEFLTKNGCDMYQGYLFSKPVPSTELPRL 699


>gi|291614129|ref|YP_003524286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291584241|gb|ADE11899.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1152

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 141/616 (22%), Positives = 268/616 (43%), Gaps = 17/616 (2%)

Query: 357  AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
             +         Q        + +I     +    +      + +    +R       +G+
Sbjct: 539  QVLGTFAIYHHQAYTPTESDIQLIEQSARLASIAIERKRSEEALHYSEKRFRDVNDAAGE 598

Query: 417  IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             VW+          +     + G     + G     + ++ + D  + R I++  +    
Sbjct: 599  YVWEMGTDMVYTYVSNRSVDVKGYVPDELLGHTP--MEFMPVEDIPHVREIVNRAIA-SN 655

Query: 477  GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
               + + R         W  +   P  + +G+++   G   +IT++K++ E I   AF D
Sbjct: 656  TSFKLQHRDITKSGTLLWEEVNGVPFFDEHGELMGLRGTGMNITDRKRAEEEIKSLAFYD 715

Query: 537  NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
             LT +PNR+  +DRL   L  S         ++ ID+D +K +ND LG  +GD +L  + 
Sbjct: 716  PLTHLPNRRLLVDRLQHALASSTRSGR-EGALLFIDLDNFKTLNDTLGHDIGDLLLQQVA 774

Query: 597  RRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLERE 651
             R+   ++  D +ARL G+ F ++L   +      + +       +  ++  P  L   E
Sbjct: 775  LRLASCVREGDTVARLGGDEFVVMLEELSEQTLEAAAQTESIGEKILLTLNQPYLLAAHE 834

Query: 652  ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
               + SIG   + +   +  E+LK A++AMY AK  G N +  F      +      ++ 
Sbjct: 835  YRNSPSIGATLFGNKPQSIEELLKQADIAMYQAKKAGRNTLRFFDPQMQETVIARALLER 894

Query: 710  DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +L  A+EN +  L Y  I      E  G EALI+W HP+ G I  + F+ +AEE+ +I  
Sbjct: 895  ELSKALENDQFQLYY-QIQMTDLNEPFGAEALIRWIHPERGLIPPNHFIPLAEEVGLILP 953

Query: 770  INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            I L++L+     I  W   A+   + + +N++++    ++    +Q ++ +   +P R+K
Sbjct: 954  IGLWVLDTACNQIKIWEKNASTRELVLAVNVSARSFFQDDFVTQIQTVLQRHAINPKRLK 1013

Query: 830  LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
            L  +ES+++ + E++   +  L+K+G+   +DDFGT  S L YL  +P D +K + S + 
Sbjct: 1014 LEITESMMLNSIEQTIEKMNALKKLGVQFAMDDFGTGYSSLQYLKRLPLDQLKIDQSFVR 1073

Query: 890  GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     AI+ +I+ MA ++   +IA+ +  E   + L   GC   Q      P    
Sbjct: 1074 DIATDSSDKAIVTTIVAMAHSLNLDVIAEGVETEQQRQLLIESGCSQYQGYLFGKPAPIR 1133

Query: 948  SILKLLKERFPLVKNT 963
               + LK   P ++  
Sbjct: 1134 QFEESLK---PGLRQA 1146


>gi|332702569|ref|ZP_08422657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552718|gb|EGJ49762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 684

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 153/627 (24%), Positives = 305/627 (48%), Gaps = 15/627 (2%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLATGYFS 397
           L+P      +  +   +A   +  + +   +  G  V    V+L     +  VL      
Sbjct: 61  LVPERDAGILQGLLGRLAADGQARDTVHLVSRDGLCVAFTLVLLRENGNVVGVLRRHADD 120

Query: 398 QGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
           +      E + L        + + +   D     +   P  + I G  +    G   + L
Sbjct: 121 ETRMRAAEHERLVADEVYRNAIEGITVTDSHARILFVNPAFSKITGYTAEEALGQTPSIL 180

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H++D+  ++ +  + + +  G+ + E   R  + + +   + I  + +  G + RY+
Sbjct: 181 KS-HLHDQAFYKAMWQALINH--GQWEGEIWNRRKNGEVYPEWLSISSVRDGLGKLQRYV 237

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            + +DITE K S E +   A  D LTG+PNR    DRL T L   A     +  ++ +D+
Sbjct: 238 AVFHDITEIKASQEKVRHQAHHDVLTGLPNRLLLKDRLATSLTHMARSGQ-KVALLFMDV 296

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IND LG  +GD +L ++  R+ E+++  D +ARL G+ F I++ +  +       
Sbjct: 297 DNFKHINDSLGHPLGDLLLQAVAARLKEVMRDDDTVARLGGDEFVILVEALESENLAIAT 356

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A+ + ++  +P ++    +TVT S+G A +      +  ++KNA++AMY AK +G N  +
Sbjct: 357 AMRLLEAFRVPFHIKGHALTVTPSVGIALYPDDGDDAETLIKNADMAMYRAKEKGRNTFQ 416

Query: 694 SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +    +     R+ ++ +L  A+E  ++   + P + L +  +VG EAL +W  P    
Sbjct: 417 LYTSALNERAVRRMTMEGELRKALERGDIQPWFQPRVGLRNGSVVGSEALARWIKPDGTV 476

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +   +LE+  R + +++D    P  ++ +N++ +     +L 
Sbjct: 477 ISPGEFIPLAEETGLILPLGEQILEQACRRVRAFQDA-GFPEQYVSVNLSPRQFRQKDLV 535

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++ ++ +T +    ++L  +ES ++ + +++   L RLR++G+++ +DDFGT  S L+
Sbjct: 536 GMVERVLQRTGFDSRLLELEITESSLVQDIDQTMATLRRLREMGLAVAIDDFGTGYSSLA 595

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL + P   +K + S + G       IAI  +II MA+++   +IA+ +     +  +  
Sbjct: 596 YLKHFPLGALKIDQSFIRGIPTDPSDIAITTTIISMAQSLNLKVIAEGVETLQQLNFILG 655

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           + CD  Q  + + PL   + L+LL++R
Sbjct: 656 LRCDEYQGYYFSKPLPPEAYLELLRQR 682


>gi|186475160|ref|YP_001856630.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
            [Burkholderia phymatum STM815]
 gi|184191619|gb|ACC69584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia phymatum STM815]
          Length = 1040

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 146/567 (25%), Positives = 268/567 (47%), Gaps = 16/567 (2%)

Query: 407  QSLAVLGSGDIVWDWDI--VRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +   +     + +    P    I G     + G     L     +DRD 
Sbjct: 478  QSRALDASVNAILITEPSKEGNLIEYVNPAFKRITGYDPQEVIGQDCRLLQR---DDRDQ 534

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                 +   +   R  +    R    D    W  + I P+ +++G    +I + ND+T  
Sbjct: 535  EGIAAIRQALAANRE-VSAVLRNYRKDGALFWNQLYIAPVPDADGQTTHHIAVINDVTAL 593

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ ID+D +K +ND 
Sbjct: 594  IRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFIDLDGFKNVNDS 652

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SI+
Sbjct: 653  LGHSVGDRLLSVVADRLARCARASDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRASIS 712

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++      
Sbjct: 713  EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNVS 772

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ ++E  L Y P + +   ++VG+EAL++W  P+ G I  S+F+ +
Sbjct: 773  AGARLNLERRLRRALRDNEFLLHYQPQVDIETGQVVGMEALVRWHDPEVGLIPPSQFIPV 832

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+D+   PP  + +N++++     ++ + +  ++ +
Sbjct: 833  AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARQFQQRDIAKLVMQVLEE 891

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 892  TGLDPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 951

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A ++   +IA+ +     +  L    CD +Q  
Sbjct: 952  LKIDRSFVSDIGESSDDETITSAIIALAHSLNLQVIAEGVETSTQLDFLKERACDEMQGY 1011

Query: 939  HVASPLGFNSILKLLKE--RFPLVKNT 963
              A PL  ++I  +L+   + P ++  
Sbjct: 1012 FFAKPLPHHAIPGMLQRGSQSPAMETA 1038



 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 20/181 (11%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           ++  DI   A+       + ++       V              +     +      ++ 
Sbjct: 313 QISADISYHAMTFMGRPALFVLAD----DVTEQINAEAEAQRSNQMLETVIDNIPQRIFW 368

Query: 421 WDIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVG 473
            D     +      A   GLA    + G      P R +   +   D D   + +     
Sbjct: 369 KDKELRYLGCNMAFARDAGLAYPEQVIGKRDEDMPWRAFAEALGRQDTDVMLSGVPKM-- 426

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 + +  +   D      +    P ++S+G ++  +G   DITE+K++   +   +
Sbjct: 427 ----NYETDLVI---DGVHRTTVTSKLPFTDSDGRVIGVLGSYTDITERKRADLALRLQS 479

Query: 534 F 534
            
Sbjct: 480 R 480


>gi|283138910|gb|ADB12513.1| putative signal transduction protein [uncultured bacterium 9F08]
          Length = 965

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 186/831 (22%), Positives = 336/831 (40%), Gaps = 53/831 (6%)

Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISID 235
           W          +       + G A +L     +          +         L  +   
Sbjct: 9   WREERSMAAWATDMSLIYFVYGAAFILMGVSILRQPKPVEGCHLGQIIWLLA-LFALFHG 67

Query: 236 FGFLSKLVNLPSGELLIWRACSEIALSSS---LIIFLFMYLH--WNRWHAKVGYITFSGI 290
                 L+N+  G   +  A   + L  S   L+ F    L     RW +    I    +
Sbjct: 68  INEWLDLLNIVHGASPLLDALRGLILPFSFLPLLEFARRLLQPWLGRWASPWLLIVPIAV 127

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY------HGMKGYERAVLLIPAW 344
             +  L     +  +  AS   I L   +L     + Y          G  RA L++   
Sbjct: 128 VVLTALISQLDWLAISVASRYAIGLPGALLAGIGLLRYSRTDEPWADHGRVRAALVVVGL 187

Query: 345 ILIFIWFIGLWMAITKRLD-----NDIIQP--------------ALVGGLVLIVILIGFT 385
            L     +   +     +      N                   AL  G  +  +L  F 
Sbjct: 188 ALAIYGLLTGLIVPPLDIPLARSLNSQWFLEQTGVPVQLFRALCALTAGAAIWYVLHTFE 247

Query: 386 V------IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +       Q    T          G+ Q + +  + D +   D       + P    + G
Sbjct: 248 IGRERQLHQMASETQQALHQARQLGQEQQMILDAAADAIIGLDNRGRVTFSNPAATALFG 307

Query: 440 LASGSMHGPIRNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            ++  + G   +    IH+             L   + +          +R  D     +
Sbjct: 308 YSAEELQG--EDLHALIHLCKEGEAHPREECGLWRLLRFGGQYHSGHETLRHKDGTPLPV 365

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +    + +  G ++  +    DI+E+    + +   A  D LTG+ NR     RL    
Sbjct: 366 EMNGSAIDDEKGVVIGAVLTFRDISERLSYEQELERRAHYDELTGLANRVLLKARLQQTT 425

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +         V+ +D+D +K +ND LG   GD +LV++ +R+  +++  D +AR  G+
Sbjct: 426 AQAHRHGK-SVAVLFLDLDHFKIVNDGLGHDCGDRLLVAIAQRLQTVVREADTVARHGGD 484

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L   +N    A+    + + IA P+ + E E+  TAS+G + +         +L+
Sbjct: 485 EFVIVLSEPDNGEDAAEIGRRLLQRIAEPVWIDEHELYTTASVGVSLFPRDGTDVDTLLR 544

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ AMY AKH G N+++ +      S   R+ +   L  AVE +EL L Y P   L   
Sbjct: 545 NADAAMYRAKHLGRNNLQFYSEEMNLSLSKRLRMLSQLRQAVERNELCLHYQPQASLPGG 604

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            ++G+EAL++W HP+ G +S +EF+ +AEE  +I+ I  ++L    R  ++W       P
Sbjct: 605 RLLGVEALVRWQHPELGMVSPAEFIPLAEESGLIEPIGEWVLREACRQGVAWDRA-GFMP 663

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + I +N++++   + +L + ++ ++ +T  +P R++L  +E+ ++ NP++S   L  +R 
Sbjct: 664 LRISVNLSARQFDNPKLDDTIRDVLEQTGLAPERLELELTETALIANPQQSVQRLSAIRD 723

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G+ L LDDFGT  S L+YL    FD +K + S +  +       AI+R++I MA+ + +
Sbjct: 724 LGVRLALDDFGTGYSSLAYLQRYTFDLIKIDRSFVADAIRNPGNAAIVRTVIAMARLLGS 783

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             IA+       I  L R GCD +Q  +++ PL    I +L    FP+   
Sbjct: 784 ETIAEGAETAETITFLGRNGCDAVQGYYISRPLPAGEIEQL----FPIDNR 830


>gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille]
 gi|151282196|gb|ABR90606.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 956

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 152/675 (22%), Positives = 296/675 (43%), Gaps = 31/675 (4%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
             L    FY                            +K    A+    A+++  +  + 
Sbjct: 287 FGLPAWLFYDQPEPYDHVFDVAGKTWSMVVSTPSMLFLKNSSSALW---AFLVGLLLSVV 343

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
             + +   +D       LV      +  +   +I  + A  +    +    + +  A+  
Sbjct: 344 SAIYVQLIVDRSRRIQLLVDDRTAQLRTVNDDLIADIAARKHAEHEL----QLRERAIEA 399

Query: 414 SGDIVW-------DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--F 464
           S + +        D+ +        P    I G +     G    +L      D +    
Sbjct: 400 SANAIIIARAVAPDYPLE----YVNPAFTRITGYSPEEALGRNIGFLWG---KDWEQPGI 452

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +    +  R G      R    D    W  + I P+ +  G++  ++    DIT  K+
Sbjct: 453 EELRSIALEKREG--HAVLRNYRKDGALFWSDLYIAPVKDDTGEVSHFVVALYDITATKR 510

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +     +D LTG+ NR    DRL+  +  +   ++    +  +D+D++K +ND LG
Sbjct: 511 YESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNH-PIWIAFVDLDRFKFVNDTLG 569

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L ++  R+   ++  D ++R+ G+ F +IL    ++         +   IA P
Sbjct: 570 HQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQP 629

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           + +   E  +++SIG A + +  +T  E++K+A++AMY AK  G N+ + +   ++    
Sbjct: 630 LTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFYTSSMNERAL 689

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ ++ DL  A+E  E  L Y P + L   +IVG+EALI+W HP+ G I    F+ +AE
Sbjct: 690 ERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAE 749

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  +++    R    W++      + + +N++++     +L E +   + +T 
Sbjct: 750 ETGLIVPIGAWVIREACRQNKVWQEHGLG-SLRMSVNLSARQFAQQDLLESIALALEETQ 808

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  +++  +ES+VM + + +  +L  L+ +G+ L++DDFGT  S LSYL   P D +K
Sbjct: 809 LPPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLK 868

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +          AI+ SII +A ++  T+IA+ +  E  +  L +  CD IQ    
Sbjct: 869 IDRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFF 928

Query: 941 ASPLGFNSILKLLKE 955
           + P+  +++  +LK+
Sbjct: 929 SRPITADAMEVMLKD 943


>gi|197117893|ref|YP_002138320.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087253|gb|ACH38524.1| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 704

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 153/591 (25%), Positives = 289/591 (48%), Gaps = 23/591 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++G+ V   + A+G   Q +       + A   +    W+WD+V   +  + ++ +I  +
Sbjct: 119 VLGYRVSYMLRASGALEQ-LRESRAGLAHAQSLAHIGSWEWDLVTGEIRCSEEVYSICSI 177

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     L  +H  DR   +  +D  +  +R  L +++R+         +   + 
Sbjct: 178 ERSFKGGNPI--LDPVHPLDRGFVQGSIDEAI-GKRAPLSFDYRI-TLGGGERTLHAELV 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G+ +   G   DITE+K++ E I   A+ D LTG+PNR+ FL +L   L  +  
Sbjct: 234 TVLDEQGEAVCLTGTIQDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANR 293

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------- 611
            D +   V+ +D+D++K +ND LG  VGD +L  +  R+   ++  D LAR         
Sbjct: 294 YDRM-LAVLFLDLDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSL 352

Query: 612 ---LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              L G+ F I+L    +   +A  A  + +++++P +L  +E+ V+ SIG + +     
Sbjct: 353 VSRLGGDEFTIMLSDIEHFQDVAKIARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDAT 412

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
           T+S++++NA+ AMY AK +G N  + +  S          ++  L  A++  E  + Y P
Sbjct: 413 TASDLIRNADGAMYQAKEQGRNGYQIYDESMNAKALERIILESQLHKALKEEEFIVYYQP 472

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +      +VG+EAL++W+  + G +    F+ +AEE+ ++  I+ +++    R    W 
Sbjct: 473 QVSNQSGRVVGIEALVRWNSKELGLVEPGRFLPLAEEIGLVIQIDQWVMREACRQHKLWL 532

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D    PP+ + INI+ +  + NEL E + +++ ++   P  ++L  +E V+M + ER+  
Sbjct: 533 DA-GFPPVTLAINISGQQFMKNELLETVTSVLKESGLDPGLLELELTEGVLMAHTERTVK 591

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            L  L+ +G+ L +DDFGT  S LSYL   P D +K + + +          AI  + I 
Sbjct: 592 TLQALKGMGVRLAIDDFGTGFSSLSYLKRFPLDVLKIDRTFINDITTDPDDAAITLATIE 651

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           MA  ++  +IA+ +  +  +  LT+ GCD  Q    + P+    + +L   
Sbjct: 652 MAHTMKLKVIAEGVETKPQLDFLTKNGCDMYQGYLFSKPVPSTELPRLFNR 702


>gi|288958667|ref|YP_003449008.1| hypothetical protein AZL_018260 [Azospirillum sp. B510]
 gi|288910975|dbj|BAI72464.1| hypothetical protein AZL_018260 [Azospirillum sp. B510]
          Length = 769

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 175/579 (30%), Positives = 296/579 (51%), Gaps = 7/579 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 V       Q +    ER +LA  G+ D +WDW I    V  +P    +LG    
Sbjct: 182 VGSQADVTDRKTAEQRLRQSEERYALAAAGAADGLWDWYIESGEVYYSPRWKAMLGFGEA 241

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G I  W   +   D    RT +D  +   R  LQ+EFR+R       WM++R   + 
Sbjct: 242 EIAGSIEEWFQRVVPGDLAGLRTAIDLHLSGERPHLQHEFRIRDKAGLELWMLVRGLAVR 301

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G  +R  G   DIT  KK+ + IL +A  D++TG+PNR   LDR+   LD +     
Sbjct: 302 DDRGGAVRMAGSMTDITAGKKAEQQILFDAVHDSMTGLPNRTLMLDRIGQALDRNRRAGA 361

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                +++D+D++K IND LG + GD VL  + +R+    +  D LARLS + F +++  
Sbjct: 362 RPFAAIILDLDRFKAINDALGTSAGDRVLRIVAKRLDASRRVGDTLARLSADEFAVLVDD 421

Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +++ +    A  M ++I+ P+ L   R++ +TASIG A   +    + +ML++A LAMY
Sbjct: 422 LDDAGEALAAAERMARAISRPVMLEEGRDVVLTASIGVALSQTGYDRAEDMLRDASLAMY 481

Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G   ++ F  +        + ++ DL  AVE   L L Y PI+ L    I G EA
Sbjct: 482 RAKSGGRARIDLFDANLRRQAMTAMRMEADLRGAVEQGHLCLHYQPIVLLETGAIAGFEA 541

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILIN 799
           L++W+HP  G +  +EF+ +AEE  +I  +  + LE+  R + +W+ +   P P+F+ +N
Sbjct: 542 LMRWNHPDRGLVPPAEFIPLAEETGLIAPMGRWALEQAVRQLAAWQARFPRPVPLFMSVN 601

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ +   D+++   ++ L+      PS +KL  +ES+++ +P+  R+LL  LR +G+ L+
Sbjct: 602 VSIRQFRDDDIVGAVRDLLDAVPIPPSSLKLELTESLLVQDPDECRMLLQSLRDMGVRLS 661

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL  +P + +K + S +   +  E   AI++ I  +A  +    +A+ 
Sbjct: 662 IDDFGTGYSSLAYLHKLPVNVLKIDRSFVRALSTGEGNAAIVQVIAGLATILRLDAVAEG 721

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +    +   L  + C Y Q  H A P    ++ +LL   
Sbjct: 722 VETAEEAVYLRGL-CKYAQGYHFARPAPPEAVERLLAAE 759



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +    +  Q +    ER +LA   S D ++DWD+V DRV  +P  A++LGL+  
Sbjct: 50  VGSVADITDLKHAEQELRRSEERYALAAAASNDGLYDWDLVTDRVYYSPRWASLLGLSPA 109

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR---LQYEFRVRAADNQFHWMIIRIR 500
            +    + WL  I   DR      +              Q E+R+R A     WM  R  
Sbjct: 110 ELTDHPQEWLGRILPADRGILTDAMAFLGAEGGDPNAAFQVEYRMRNAAGAIRWMACRGI 169

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILC 531
            + ++ G  +R +G   D+T++K + + +  
Sbjct: 170 AVLDAAGKAIRLVGSQADVTDRKTAEQRLRQ 200



 Score = 45.3 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 474 YRRGRLQYEFRVRAADN--------QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                 Q E RV  A +        ++ W++ R   + +  G+ +R +G   DIT+ K +
Sbjct: 3   GLSVPFQIEHRVCRAGSGQAAGGKPRWRWLVCRGMAVMDDAGEPVRLVGSVADITDLKHA 62

Query: 526 LEGIL 530
            + + 
Sbjct: 63  EQELR 67


>gi|119899351|ref|YP_934564.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Azoarcus sp. BH72]
 gi|119671764|emb|CAL95678.1| GGDEF/EAL/PAS/PAC/GAF-domain containing protein [Azoarcus sp. BH72]
          Length = 1006

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 148/646 (22%), Positives = 260/646 (40%), Gaps = 20/646 (3%)

Query: 329  HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
                GY  +  L           +                   +   + + I       +
Sbjct: 363  GARHGYRASAALPLHRGGKVFGVL---NLYAGECHAFDEAAQRLLVEMAMDIDFALDRFE 419

Query: 389  HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHG 447
                    +  I    E+         D++W  D         +P +  + G A   +  
Sbjct: 420  QDAERARLAAAIVDSEEKYRELTESINDVIWTVDPETRCFSYVSPAMRRLSGYAPHELID 479

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGY-------RRGRLQYEFRVRAADNQFHWMIIRIR 500
                    +        R  +   +                E  +   D    W  +   
Sbjct: 480  APIE--RLLKPEYVAEMRERMALHLAEFHVGKRKSEDYSVEEVELGRRDGGTVWAEVVTT 537

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
               N     + +  +A DI+E++ +   I   A  D LTG+PNR    DR      L+  
Sbjct: 538  LGLNRRSGRVEFRAVARDISERRAAEAEIQRLAHYDQLTGLPNRSLVKDRFRYAASLTQR 597

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                +  VM  D+D +K IND LG   GD +LV + RR+  +L+  D + RL G+ F  +
Sbjct: 598  RRG-QLAVMFFDLDHFKNINDTLGHDFGDRLLVEVARRLESVLRGGDTVCRLGGDEFVFL 656

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L    ++   A  A  + +++A P+ L  +E+TVT SIG A +         + +NA+ A
Sbjct: 657  LPD-TDAEGAARVAAKLLEAVAQPLVLDHQELTVTPSIGIAMYPDDGTDFDTLSRNADAA 715

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            MY AK  G N    F  +        +     L  A++  +  L Y P + L D  +VG 
Sbjct: 716  MYQAKREGRNGFRFFTEAMQARSTRTLLLANALRHALDRGQFSLHYQPQVSLADGRVVGA 775

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W HP++G +S  EF+ IAE   +I  I  ++L         W D+   PP+ + +
Sbjct: 776  EALLRWTHPEFGPVSPGEFVPIAESNGLIAQIGEWVLREAVAQSRRWLDEGL-PPLVMAV 834

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N+++    +  L E +  +I +    P +++L  +E+V M +P+ +  ++  L   GI +
Sbjct: 835  NLSAAQFRNPNLPELVSQVIEEAGLPPHQVELELTEAVAMDDPQSAVRVMDALFARGIRM 894

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            ++DDFGT  S L YL       +K + S +          AI+ +II +A ++    +A+
Sbjct: 895  SIDDFGTGYSSLGYLKRFKVGKLKIDQSFVRDIGDDPDDKAIVSAIIHLAGSLGMLTVAE 954

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             +     +  L + GCD +Q  + + PL   + +  L+E   L  +
Sbjct: 955  GVETLDQLDFLRQQGCDTVQGYYFSRPLPAEAFVGYLQESGALTPS 1000



 Score = 58.0 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 79/260 (30%), Gaps = 15/260 (5%)

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            R    +     + +  +A    ++F     +A +  +  A    +      +   KG+ 
Sbjct: 9   RRHAPGLARSAPARVRALASALSLAFVLGTASAPVCALPPAVFQTHLDPGGDW-SGKGHP 67

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
               L+ A   +        +          +    + GL     L+   V+        
Sbjct: 68  GEGGLLGALAHVVGHDAAHAL-------FSPVARNTLLGLAGTGALLFGGVLLLRARVRA 120

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++ +     +    +    D++++ D     +    +    L     ++ G     +  
Sbjct: 121 RTRELEGVNRQLGATLDAIPDLLFEMDGEGRYLAVHANREAQLQRPVEALLGRR---VDE 177

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +        +T L +     R       ++    DNQ  W  + +      +G    +I 
Sbjct: 178 VLPA--PAAQTCLAALAEAGRHGWSSGQQIEITIDNQPQWFELSVAR-KADDGGPAHFIV 234

Query: 515 IANDITEQKKSLEGILCNAF 534
           ++ DIT ++++   +   + 
Sbjct: 235 LSRDITARRRAEASVQRLSR 254


>gi|297538889|ref|YP_003674658.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258236|gb|ADI30081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera sp. 301]
          Length = 2044

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 147/584 (25%), Positives = 255/584 (43%), Gaps = 14/584 (2%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            I        LA+    +    D  R +     S + +   D     +        I G  
Sbjct: 1466 ITLIEQSANLASIAIERKQAEDDLRIASIAFESQEGMMVTDAKNIILKVNQAFCDITGYT 1525

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            S    G     L        + F   +   V +  G    E   R  + +     + +  
Sbjct: 1526 SEEAVGHTPRLLSS--SQHSEGFYDAMWECV-HATGHWAGEVYNRRKNGEVFPQHLTVTV 1582

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + ++NG +  ++    DIT  K + E I   AF D+LTG+PNR+  +DRL   L  +A  
Sbjct: 1583 VKDANGIVTNHVATLTDITMNKAAAEEIKHLAFYDSLTGLPNRRLMVDRLNQALVFNART 1642

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                  V+ +D+D +K +ND LG  VGD +L  +  R+   ++  D +ARL G+ + ++L
Sbjct: 1643 GR-DGAVLFLDLDHFKTLNDSLGHDVGDLLLQQVAERLVSCVREGDTVARLGGDEYVVLL 1701

Query: 622  ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
             S +        ++      +  S+     L + E   T SIG A +++   +  E+LK+
Sbjct: 1702 ESLSEDAPEAATQVEVIGEKILASLNQAYQLGQHEYHCTPSIGVALFSNHNQSQEELLKH 1761

Query: 677  AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++AMY AK  G N +  F             ++ +L  A++  +L+L Y   + +    
Sbjct: 1762 ADIAMYQAKKAGRNTIRFFDPKMQEVINTRVDLERELRKAIDKQQLHLYYQIQVDVA-GR 1820

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             +G E LI+W HP+ G +S   F+ +AEE  +I  I  ++LE     +  W        +
Sbjct: 1821 PMGAEGLIRWLHPEHGLVSPFHFIPLAEETGLILPIGQWVLETACHQLKLWEKDEMTSAL 1880

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             + IN+++K     +    +Q  + +   +P  +KL  +ES+++ N E +   + RL+++
Sbjct: 1881 TLSINVSAKQFRQADFVNQVQEAVQRYDVNPMLLKLELTESMLLDNIEDTVTTMNRLKEV 1940

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            GI  +LDDFGT  S L YL  +P   +K + S +          AI+R+I+ MA  +   
Sbjct: 1941 GIRFSLDDFGTGYSSLQYLKRLPLYQLKIDQSFVRDIAVDSSDQAIVRTIVAMAHTLNLN 2000

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +IA+ +  E     L   GC + Q      P+       LLK  
Sbjct: 2001 VIAEGVETEEQQGLLLNNGCTHYQGYFFGRPVPIEQFEVLLKSH 2044



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +         + +  +R   A+ GSGD VWDWDI  + +  +     ILG +  
Sbjct: 667 VGTASDISLRKQLEVELKAKDDRWKFAIEGSGDGVWDWDIQSNTIEHSARWKEILGYSPS 726

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
                  +W    H +D+      +  ++  +    + E R++  D  + W++ R   + 
Sbjct: 727 DTLPTGEDWENRFHPDDKARVAEAMRLYLEGKTSVYRVECRIKCKDGSYKWILGRGMVVS 786

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + +G  LR IG + D++++K++   +   A 
Sbjct: 787 RDEDGKPLRMIGTSIDVSKRKQAEIELSIAAT 818



 Score =  142 bits (359), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               +  +       + +     R   A+ GSGD VWD ++  +  T +   A +LG  + 
Sbjct: 918  VGTVLDITERKKTEEALIESEYRSKFAIEGSGDGVWDVNVQTEEATYSKRWAEMLGYEAS 977

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
             +      W   IH  D+        +++  +      E+R+R  D ++ WM+ R   + 
Sbjct: 978  EILPTRDEWRALIHPEDKPRVLAAGTAYLEGKTEIYVVEYRIRCKDGEYKWMLSRGILVS 1037

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCN 532
             + +G+ LR IG   DITE+K + E +   
Sbjct: 1038 RDEHGNPLRMIGTQIDITERKLAEEKLKRM 1067



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 1/144 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F  +  +       Q +     R   A+ G GD +WD D V   +T +     I+G A  
Sbjct: 537 FISVVDITELKKIQQDLMERDARWKFAIEGFGDYLWDSDEVSRTITYSKAWIDIVGYAED 596

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
            +   +  W   IH +D+      L S +         E+R+   +N + W+  R   + 
Sbjct: 597 ELDHKLNEWESRIHPDDKVAVFANLQSCLDGDTPTYDCEYRILCKNNSYKWIHDRGIVLD 656

Query: 503 SNSNGDILRYIGIANDITEQKKSL 526
            + NG  LR +G A+DI+ +K+  
Sbjct: 657 RSVNGKPLRMVGTASDISLRKQLE 680



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 7/124 (5%)

Query: 407 QSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-N 463
            S+A     S   +   D  R  V    +     G  +  + G     +  +  +  D  
Sbjct: 813 LSIAATAFESQQSIIIADAKRKIVRVNSEFTKTTGYTAEEVVGQS---IDILKSDKHDTA 869

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F   + + + +  G    E   +  +   +   + +  + + + ++  Y+G   DITE+K
Sbjct: 870 FYKTMWTTISH-VGTWSGEVWNKRKNGDIYPGQLTLTAVKDEHDNVSYYVGTVLDITERK 928

Query: 524 KSLE 527
           K+ E
Sbjct: 929 KTEE 932



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              ++ V       Q +      Q   +     +VW  D     +      A   G  S S
Sbjct: 1183 VTLEDVTQLKQAEQVMQLRESYQRSLLDNFPFMVWLKDKKHRYLAVNQAFAKASGYDSES 1242

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +   + + L          +R+   + +     R   E  +   + + +W  I   P++ 
Sbjct: 1243 LLPGLTD-LEVWPKEVAKKYRSDDIAVLKNGVPRASEE--IVEINGRKNWYEIYKSPVT- 1298

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNA 533
             +G+++  +G A DI ++K +       +
Sbjct: 1299 IDGEVVGTVGFARDINDRKHAEMFEQFRS 1327



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 5/158 (3%)

Query: 375  LVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            L +I   I  T  +         Q  +    ER       +                   
Sbjct: 1045 LRMIGTQIDITERKLAEEKLKRMQLELLESHERYVDLYEFAPIGYLSVTKHGMITEVNWK 1104

Query: 434  IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQF 492
            +  +LGL    ++    +   ++  +D+  +R         + G  L    ++ +A+   
Sbjct: 1105 VTAMLGLQRKDINQHRFD--EFVVDDDKSFWRRQFTMIKEMQGGEELTLSLKLASANGSI 1162

Query: 493  HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                +    M + +   +  +    D+T+ K++ + + 
Sbjct: 1163 FNANLHCLRMDDDDDQPILRV-TLEDVTQLKQAEQVMQ 1199


>gi|114320258|ref|YP_741941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226652|gb|ABI56451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 696

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 136/577 (23%), Positives = 253/577 (43%), Gaps = 7/577 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               Q V       + +       + A   +    W  D VR+ +  + ++  I GL  G
Sbjct: 112 VVSFQDVRERQVAREALERREAELAEAQQIAHLGSWVSDFVRNEIRWSDEVYRIFGLTPG 171

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    ++  +H  DR   R  +D  +         E R++  D     +  +     
Sbjct: 172 EWGGTEAAFMEAVHPEDRARVRQAIDESMRPNGPPYDIEHRIQRPDGSVRIVHQKGTVAF 231

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +++G  LR  G+ +DITE +++   +   +  D LT +PNR  F  RL   +  +  +  
Sbjct: 232 DADGRPLRMAGVVHDITEMREAERRLQYLSHHDVLTELPNRTLFQIRLRQAISEAQAEKG 291

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ I +D+++ +N+ +G   GD VL  + RR+   L+  + LARL G+ F ++L  
Sbjct: 292 C-FALVHIGLDRFRSVNEGVGHHAGDQVLQQVARRLEACLRPGETLARLGGDEFAVLLAG 350

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  ++A     +   +     + E E  V  S G A +     +  E+++ AE AM+ 
Sbjct: 351 AGDDAEVAAGVDRLLAPLQELFRVGEDEFYVPGSAGVALYPHDCSSPGELMQRAEAAMHR 410

Query: 684 AKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEA 740
           AK          S  ++     RV ++  L  AV+  E  YL Y P +      I+GLEA
Sbjct: 411 AKQEESTRLAYYSAEMNQRARARVALESRLRRAVDRMEGFYLDYQPRVETATGRIIGLEA 470

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W   +    S + F+ + E+  +I  +  +++    R   +WR     PP+ + +N+
Sbjct: 471 LLRWREGEGPVHSPATFVPVLEQTGLIMELGEWIVGEACRQARAWRQAGL-PPVQLAVNL 529

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A+    D  +   ++  + +    P  ++L  +ES++M         LG+ R +G+ + +
Sbjct: 530 AAPQFRDPAMPGIIEGALGEAGLPPGNLELEVTESMLMREVTSVIDTLGQFRDMGVRVAM 589

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P D +K + S +      E   AI+R+I+ +A N+    +A+ +
Sbjct: 590 DDFGTGYSSLAYLRRFPIDVLKIDRSFVNDLYADESGAAIIRTILSLADNLGMESVAEGV 649

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L R GC  +Q    + P       ++L+ 
Sbjct: 650 ERPEQHAFLCREGCHAVQGYLFSRPASPEVCARMLRR 686



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 4/125 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDN- 463
           +   +    + V+  D   +          +LGLA     +    + W  +   + +   
Sbjct: 2   REQLLESLAEGVFSVDAEGNFTFLNRAACRLLGLADEQVALRANHQEWALHSGPDSQPLP 61

Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              + +D  +         E R R +D     +++   P+    G I   +    D+ E+
Sbjct: 62  PRSSPIDQVLRTGCVLKGCELRFRHSDGHPVPVLVNAAPLYGEEGRIAGAVVSFQDVRER 121

Query: 523 KKSLE 527
           + + E
Sbjct: 122 QVARE 126


>gi|307634951|gb|ADI84765.2| response receiver sensor diguanylate cyclase/phosphodiesterase, PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 708

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 148/622 (23%), Positives = 273/622 (43%), Gaps = 19/622 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            +   +  T  +D      A       I  ++    I+++L        +         A
Sbjct: 88  LVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLLRAKLAFDELHKSRTMLYNA 147

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +    W++D+  +  T + +   I G+         R  +  +H  DR   +  +  
Sbjct: 148 QRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQ 207

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 G    + R+   D     +      +S  +G   R +G  +DITE+  + E I 
Sbjct: 208 AFRTGVG-YCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIR 266

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LT +PNR  F +R+   L  +  +      V+ +D+D +KK+ND LG   GD 
Sbjct: 267 YLAHHDTLTALPNRFQFEERMEQALAFAQRN-GFMMAVLFLDLDHFKKVNDTLGHHAGDR 325

Query: 591 VLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMR 638
           +L     R+ + L+  D             ++R+ G+ F I+L    +    A  +  + 
Sbjct: 326 LLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILLTDLAHPQDAARVSQRII 385

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +++    +   E+ V ASIG + + S      ++L+NA+ AMYHAK  G N  + +  S
Sbjct: 386 TALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGS 445

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ ++ +L  A++ +E  L Y P +      +VG+EAL+ W  P    +   +
Sbjct: 446 MNAMALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDD 505

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I +I  ++L       ++W  +   PP+ + +N++S       L E ++ 
Sbjct: 506 FIPLAEETGLIASIGEWVLWNACAQAVTWLHEGL-PPVRVAVNLSSLQFRSRRLAELVRK 564

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T   PS ++L  +E V M N E + +++  L+K+G+  ++DDFGT  S LS L   
Sbjct: 565 VLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSVDDFGTGYSSLSRLSRF 624

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +   +    A  +  +II MA+N+   +IA+ +        L   GC  
Sbjct: 625 PLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAE 684

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q    + PL  ++    L+ R
Sbjct: 685 VQGFLFSQPLNPDAAAAFLRAR 706


>gi|313201431|ref|YP_004040089.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440747|gb|ADQ84853.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 679

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 151/577 (26%), Positives = 278/577 (48%), Gaps = 13/577 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           IQ +       Q +     R       S + ++        +   P +A I G  +   +
Sbjct: 105 IQDITQRKLNEQALQEAERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGYESPEEL 164

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              + N    ++     R  F T++   +  R   + +E ++   D    W+    R + 
Sbjct: 165 IQSLNNIAQQLYVQPESRQAFLTLMQ--LEDR--VVNFESQIYRRDGSTIWISENARAVR 220

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N  G +L + G   DITE+K     I   A  D+LTG+PNR    DRL   +  +    +
Sbjct: 221 NDEGKLLYFEGTVEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTAS 280

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V+ +D+DK+K IND +G  +GD +L+++ RR+   ++  D +AR  G+ F ++L +
Sbjct: 281 -KLAVVFVDLDKFKDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSN 339

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +    ++     +    + P ++  ++ TVT+SIG + +     TS  +LKNA+ AMY 
Sbjct: 340 IHGMDALSQTLQRVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYK 399

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+ + +         +R+ ++  +  A+ ++E +L Y P + L  + I G+EAL
Sbjct: 400 AKQEGKNNFQFYTRELNSILVERLEMEYQMRNALGHNEFHLHYQPKLNLRTQRITGVEAL 459

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W +P+ G IS + F+ IAEE  +I+ I  ++LE+   +      Q +   + + +N++
Sbjct: 460 IRWHNPRQGLISPNRFIPIAEESSLIEQIGSWVLEKACME-SIALSQLSGYDVPVSVNVS 518

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +    + L   +  ++ +T   PS ++L  +E  +     +   +L  L+ +GI L +D
Sbjct: 519 PRQFQQSNLVGNISRVLQETGLKPSLLELEITEGTLADTSPQFIKVLNDLKGLGIKLAID 578

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL + P D +K + S + G        AIL++I+ +  N+   ++A+ + 
Sbjct: 579 DFGTGYSSLGYLKHFPIDNLKIDRSFVMGLESDTANQAILKAIVALGHNLGINLVAEGVE 638

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E     L  +GCD +Q    + PL F+   KLL  +
Sbjct: 639 TERQRDFLLSIGCDEMQGFLFSQPLPFDQAGKLLLAQ 675



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 25/179 (13%)

Query: 427 RVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            +  +     + G     +    R ++       DR   R  +D  +  RR R + E+R+
Sbjct: 16  MLFISDGCFDLTGYRPDELLHNGRTSFEELTLPEDRARIRNTVDDALS-RRERFEIEYRI 74

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D Q  W+  R   + N  G +    G   DIT++K   E  L  A +        R 
Sbjct: 75  MTIDGQIRWVNERGTGIFNPQGQVEALEGFIQDITQRK-LNEQALQEAERRY------RN 127

Query: 546 SFLDRLTTILDLSATDD--NLRPTVMVIDIDKYKKINDVLGIAVGDDV---LVSLTRRI 599
            F + +  I   S      N  P +  I            G    +++   L ++ +++
Sbjct: 128 IFENSIEGIFQTSQDGQYINANPALARI-----------YGYESPEELIQSLNNIAQQL 175


>gi|89097342|ref|ZP_01170232.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Bacillus sp. NRRL B-14911]
 gi|89088165|gb|EAR67276.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Bacillus sp. NRRL B-14911]
          Length = 1106

 Score =  564 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 148/577 (25%), Positives = 269/577 (46%), Gaps = 11/577 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLAS 442
             + + V         +  + E+       S   VW  D    +V   +  I  I G   
Sbjct: 383 VGISRDVTEQREIEDRLAENTEQFKSFYNNSDVGVWSLDPAGKKVLICSNAILAIYGYTK 442

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             ++   R W   IH +D        +         ++ ++R+   D +  W+   + P+
Sbjct: 443 KELYRDPRIWNRSIHPDDVQEVINNQNKISEGNI--IRQQYRIITRDGKLKWVSDHLIPI 500

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G ++R  GI  DIT QK++   +   A+ D +TG+PNR+ F   L  + +     +
Sbjct: 501 YDEKGRLIRLDGIVADITAQKQAEAQMEFLAYHDYMTGLPNRRLFDQTLNGLFE---GKN 557

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  +M +D+D++K IND LG  +GD VL     RI   ++  D  +R+ G+ F II  
Sbjct: 558 PEKFAIMYLDLDRFKHINDTLGHPIGDQVLKEAADRITASIRKGDFASRMGGDEFAIIAR 617

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +    +  A  +  +I  P  +   E+ +TASIG + + ++  T  E+ +NA+ A+Y
Sbjct: 618 NVESIEDASRLAAKITGTIQKPYEIEGYELFITASIGISLYPNNGSTPEELARNADAALY 677

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  G +  + +  S          ++ D+  A+++ + Y+ + P I     ++ G EA
Sbjct: 678 HAKQMGKSSHQVYNASMNIESFKKYCLERDMRNALKDDQFYVEFQPKIEPRTHKLAGAEA 737

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP WG +S  EF+ +AEE  +I  I  +++E +   +  W+    +  + I IN+
Sbjct: 738 LLRWNHPDWGIVSPMEFIPVAEESGLIVEIGDWVIENVIAKMEEWQK-GGLSLVPISINV 796

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +    N L E +  L  K   SP  ++L  +ES ++   ++    L +L ++ I L+L
Sbjct: 797 SGQRFYKNNLAEMIGDLCQKHGISPKLLELELTESSLIHYSDQVLQELEKLGQLKIKLSL 856

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L++L    F+T+K + S         +   I  S+I MA  +   ++A+ +
Sbjct: 857 DDFGTGFSSLTHLRKFRFNTLKIDKSFTKNIISNLEDATITSSLIDMAHGLNMKVVAEGV 916

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                +  L + GCD IQ    + P+        LKE
Sbjct: 917 EEFEQLDFLKKKGCDEIQGFLFSRPVSGIVFRDFLKE 953



 Score =  115 bits (287), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 1/145 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + + +       + +    ER +LA   +    WD+    D    +  +  + G++  
Sbjct: 255 FGIAKDITELAEKERKLQKAEERLNLAQKTANFGYWDYYFKEDSAYWSEHMYEMFGVSKD 314

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   +  +IH  D   F     + +  +      E+R+   D Q   +  +   + 
Sbjct: 315 EFIPSFDYYKDFIHPEDLAPFLKNYHASLEEKT-PADLEYRIIRKDGQVRRLHHQSTLIL 373

Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528
           + +G   R +GI+ D+TEQ++  + 
Sbjct: 374 DGDGCPERAVGISRDVTEQREIEDR 398



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D+ +  D     +          G ++  +    R + P++   D     T   + +
Sbjct: 37  NTSDLAYILDKEGQILKVNEAAVKATGFSAEEI--QKRGFFPFVCKEDLPKAETSFQAVL 94

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                   + FR+   D     +     P+   N   +  IGI+ DIT ++   + 
Sbjct: 95  QGSTQT--HIFRINRRDGGLILLNSVAIPIIQEN-QTIGIIGISKDITAEENLKQK 147



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 15/179 (8%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            + +   +   IIQ     G++ I   I         A     Q +    +         
Sbjct: 111 GLILLNSVAIPIIQENQTIGIIGISKDIT--------AEENLKQKLSISEQMYRSLFDNH 162

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D V+  D+  D       +  +       MHG   ++  ++          +       
Sbjct: 163 PDAVYSLDLNGDVTAFNDSLVRLFHYDPD-MHG--ISFRQFVAPESMSLVMCMFKLAAKG 219

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +               +     I   P+  ++  I    GIA DITE     E  L  A
Sbjct: 220 KPQNYNMT--GINRSGEKFDANITNIPII-TDNQITGVFGIAKDITEL-AEKERKLQKA 274


>gi|224588186|gb|ACN58810.1| GGDEF family protein [uncultured bacterium BLR9]
          Length = 765

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 147/642 (22%), Positives = 291/642 (45%), Gaps = 11/642 (1%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
           +++         G++    A    P   L+ +  +      +  L+       L G +  
Sbjct: 120 VMVLDLGLPDAQGLEAVRAARACTPNIPLVVLTGLDDGHLASLALEEGAQDYLLKGEINA 179

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             +      +++ +      + +F++ E   + +    D V   D+  +          +
Sbjct: 180 RGLR---RALRYAIDRKAIEEKLFAEQESARVTLNSIADAVISADLSGNITFLNSVAEKL 236

Query: 438 LGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWM 495
            G       G    + L  +    R+   + ++     +R  +      +   D     +
Sbjct: 237 TGWQQNEALGRPIADILKVVDEITREPRGSTVERPNQLHRSTKAPSNSILVRRDGSELPI 296

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                P+ +  G I   + + +D++  +     +   A  D LT +PNR+   DRL   +
Sbjct: 297 DESRAPILDRQGQIAGTVTVLHDVSVTRAMELKMAHLAQHDFLTDLPNRRVLDDRLRQAI 356

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            L+      +  V+ +DID++K IND LG  +GD  L S+  R+   ++  D +AR  G+
Sbjct: 357 SLARRQGK-QLAVLFVDIDRFKHINDSLGHGMGDKALQSMAERLTTCVRASDTVARQGGD 415

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L     +   A  A  +  ++A+P  +   E+ ++ASIG ++  +    +  ++K
Sbjct: 416 EFVILLAEVTTADDAAIVAKKILSAVALPHRIGRHELQISASIGISTCPNDADDAETLIK 475

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A++AMY AK +G N+ + FR  ++     R  ++  L LA+E  E  L Y P + L   
Sbjct: 476 HADIAMYQAKEKGRNNYQFFRADMNERVLQRQSLESSLRLALERQEFLLHYQPKMNLETG 535

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G+EALI+W HP+ G +  + F+ +AE+  +++ I  ++L+   R +  W       P
Sbjct: 536 HITGMEALIRWRHPELGLVPPASFIGVAEDCGLMQPIGRWVLQEACRQVKEWMVAGLN-P 594

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N+++ +       +G+ + + +T   P  ++L  +E+V+M   E +  +L  L+ 
Sbjct: 595 VPVAVNVSAVEFRRKHFFDGVISTLRETDLDPRYLELELTETVLMKEAEPTIAVLHALKS 654

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
            G+ L +DDFGT  S LSYL  +P DT+K + S +T  T      AI+ +II M K++  
Sbjct: 655 AGVKLAIDDFGTGYSSLSYLTRLPVDTLKIDRSFVTDVTTRTDNAAIVSAIIGMGKSLNL 714

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +IA+ +  +  +  L    C   Q  + + P+   ++ +LL
Sbjct: 715 NVIAEGVETQEQLALLRSHCCAEGQGYYFSRPVSVPAVAELL 756


>gi|119476185|ref|ZP_01616537.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
 gi|119450812|gb|EAW32046.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [marine gamma proteobacterium
           HTCC2143]
          Length = 799

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 165/655 (25%), Positives = 300/655 (45%), Gaps = 21/655 (3%)

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
              ++    +A +        ++       R    + +        I           N 
Sbjct: 149 PLQALYLGIIACLSFLGFAIALWLANVSSNRLSQRLLSLETTAHNIISNG--------NY 200

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            ++   V    +  +   F  +            +    E+  L    S   ++  DI  
Sbjct: 201 SLRAQKVENDTISNVTTNFNQMLDFFQQQDTQ--LRDSEEKFRLINETSKVGIFQLDING 258

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             V    +++ I GL    +     NWL  IH  DR          +   +  L    R+
Sbjct: 259 TCVYANTELSLITGLPVNEILES--NWLTAIHPEDRSTVEEQWQVMLDNNQ-SLDLNCRL 315

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           +    Q  ++   +R +  S+G ++ YIG  ND++E K +       A+ D LTG+ NR+
Sbjct: 316 KTP--QTKFIAAYVRLLRRSDGRLIGYIGAINDVSEIKNAQTQFEEMAYYDMLTGLANRR 373

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F +RL  ++     + +    ++++D+D++K +ND +G   GD +L  +  R+ + ++ 
Sbjct: 374 LFRNRLEHVVSNLKKEQS-SLGLILVDLDRFKSVNDAMGHDAGDKLLKIVAGRLQQCVRA 432

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARLS + F IIL    NS   A  A  +  +I  P+ + E E  +TASIG A    
Sbjct: 433 SDTVARLSSDEFAIILPGIKNSRTTAHVAEKVLTAIQQPVLINETEQRLTASIGIAIAPQ 492

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLV 723
           +   +  ++KNA+LA++HAK  G N+ + F   ++    DRV +  DL  AV+NS+  LV
Sbjct: 493 NGTDAKTIIKNADLALFHAKDNGRNNYQFFTVEMNIQLIDRVALTHDLKQAVKNSDFTLV 552

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P I L    +VG EALI+W+H   G +  +EF+ +AE+  +I  +  +++      + 
Sbjct: 553 YQPKICLKQGNLVGFEALIRWNHKIRGAVGPTEFIPVAEQTGLIIPLGRWVITTACEQLR 612

Query: 784 SWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           +  D+      + + +N+++    D  L + ++  I+     P + ++  +ESV+M N +
Sbjct: 613 TMYDEEIVNDSVSMAVNLSAHQFQDEHLVDFIRDRINTFDIKPGQFEIELTESVLMENFD 672

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +   L  LR++GI +++DDFGT  S L YL  +P +TVK + S +T     +  + I  
Sbjct: 673 NAIEKLEALRQLGIQISIDDFGTGYSSLGYLKRLPVNTVKVDRSFVTDIPNDKSDMEITS 732

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++I MA N+  T++A+ +  E  ++ L   GCDY Q    + PL  + +      
Sbjct: 733 AVIAMAHNLNYTVVAEGVETEQQLQFLEHSGCDYGQGYFFSKPLPDHELELFCAN 787


>gi|17227715|ref|NP_484263.1| hypothetical protein all0219 [Nostoc sp. PCC 7120]
 gi|17135197|dbj|BAB77743.1| all0219 [Nostoc sp. PCC 7120]
          Length = 585

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 154/573 (26%), Positives = 268/573 (46%), Gaps = 14/573 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +     +    +  S DI+  ++        +P I  ILG     + G    
Sbjct: 10  DGNQAEAALRESEAKFRSLIQNSSDIIGIFEPDGTIRYESPSIERILGYKPEELVGKNA- 68

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +IH +D  +     +  +      +  E R R  D  + ++      +  +   +  
Sbjct: 69  -FDFIHPDDITSNSQSFNYLIQNLGATVLVESRFRRKDGSWCFLESTGSNLL-AEPSVKG 126

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  + DIT++K + E ++ +A  D LTG+PNR  F+DRL   ++ +    +    V+ +
Sbjct: 127 IVINSRDITDRKLAEERLVHDALHDVLTGLPNRVLFIDRLRRAVEYAKRYSDHLFAVLFL 186

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  +GD +LV + +R+ E L+  DI AR  G+ F I+L    +     
Sbjct: 187 DLDRFKFINDSLGHTIGDQLLVIIAQRLIECLRPTDIAARFGGDEFIILLEGIQDISDTV 246

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +++ + +P+ L   EI  TASIG +   +      ++L+NA++AMY AK RG   
Sbjct: 247 RVVERIQEKLLVPVVLSGHEIFTTASIGISLSATGYEQPEDLLRNADIAMYRAKARGKAC 306

Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            E F          R+ ++ DL  A+E  E  + Y PI+ L    I G EAL++W HP+ 
Sbjct: 307 YEIFNSDMHVQIVERLQLENDLRRAIERHEFLVYYQPIVSLTTGRITGFEALVRWLHPEQ 366

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-------ANMPPIFILINIAS 802
           G +   EFM IA+E  +I  I+ ++L    R    W++Q        +  P+ I IN+ S
Sbjct: 367 GIVFPEEFMPIAQETGLIIPIDAWVLREACRQTRQWQEQIPSLSTDLHKQPLSISINLCS 426

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                 +L E +  ++  T      +KL  +ESV+M N E +  +L +LR +GI L +DD
Sbjct: 427 SRFSQKKLLEDINQVLQDTGLDAQSLKLEITESVIMENGENATTMLNQLRNLGIELAIDD 486

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L  L   P + +K + S +   G     + I+ +I+ ++  +   + A+ +  
Sbjct: 487 FGTGYSSLGRLHNFPINGLKIDQSFVSGRGVEAGNLHIVETIVTLSSKLGVDVTAEGVET 546

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++ L  + C+Y Q    + PL  +S   L+
Sbjct: 547 PAQLQRLRELKCEYGQGYFFSEPLDSDSAKALI 579


>gi|307155019|ref|YP_003890403.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306985247|gb|ADN17128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7822]
          Length = 1342

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 157/619 (25%), Positives = 288/619 (46%), Gaps = 18/619 (2%)

Query: 351  FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-----GIFSDGE 405
             +G  + I   ++N      L     LI++ +    I       + +       I    E
Sbjct: 718  LMGQILGIPIIVNNYSEIEILQPSGKLIIVRMRLVKIIWQEKNAFLASLVDVTDIQQAQE 777

Query: 406  RQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            +  +   A   S   V   D         P    I G     + G     L        +
Sbjct: 778  QLKILYQATEQSPVSVVITDAEGTIEYVNPKFEKITGYQRAEVIGQNPRILKS-GETTTE 836

Query: 463  NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             ++ I  +    +      EF  +  + +  W    I P+ N+ G I  ++ +  DITE+
Sbjct: 837  EYKQIWKTITSGQ--EWHGEFHNKKKNGELFWEAASISPIKNAEGIITHFVAVKEDITER 894

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            K     +   A  D LTG+PNR   +DRL   +  +      R  VM ID+D +K +ND 
Sbjct: 895  KAQQTTLTYQANYDALTGLPNRFLAIDRLKQAILQADRQKK-RVAVMFIDLDHFKDVNDT 953

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG   GD +L  +++R+ + L+  D +ARL G+ F IIL +   +      A  +  S+ 
Sbjct: 954  LGHEYGDLLLQKVSQRLKQCLRKSDTVARLGGDEFLIILPNLRETHHCKLIASKILSSLE 1013

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
             P NLL  E  ++ASIG   +       S +++NA+ AMY  K  G N  + +   ++  
Sbjct: 1014 KPFNLLTEEAFISASIGITLYPDDGNDVSVLMRNADAAMYLGKRGGRNDFKFYTMGMNEE 1073

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ I++ L  A++ +E YLVY PII L  + ++G EAL++W++P+ G +S  +F+ I
Sbjct: 1074 AQSRLRIEKLLRYALKKNEFYLVYQPIIDLRFQTVIGAEALLRWNNPELGRVSPDQFISI 1133

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  +  +++ +  +++++W+ Q    PI++ +N++ +   +++L E +   I+ 
Sbjct: 1134 AEETGLISELGAWVISQACQEVVNWQTQG--SPIWVAVNLSPRQFRESKLLEIISNAITL 1191

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               +   ++L  +E +++ +   S+ ++ +L ++   L++DDFGT  S LSYL   PF+ 
Sbjct: 1192 NGITNHYLELEITEKLLLEDFPGSKGIIEQLHEMDFRLSIDDFGTGYSALSYLIKFPFNR 1251

Query: 881  VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S +      +   A++++II M   ++  +IA+ +        L   GCDY Q  
Sbjct: 1252 LKIDRSFIADIPHNQEVLALVKTIIAMGHGLKLQVIAEGVETTEQANILEAEGCDYAQGY 1311

Query: 939  HVASPLGFNSILKLLKERF 957
              + PL      + L+   
Sbjct: 1312 FFSRPLLSEEFRRYLQSHQ 1330



 Score = 92.3 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 9/176 (5%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +   LV     I I I  +V+  V       + +       +     +   ++  D    
Sbjct: 395 VSANLVKNEANIAIYIMISVM-DVSQQQGTEESLQKLLRLYTNLTQAAPVGIFRADESGK 453

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +        I G++     G    W  Y+H +DR          +  +    + E+R R
Sbjct: 454 WLYANEKALLISGISLDKAIG--MGWANYVHNDDRARVFNEWIKSIQTQT-SWRTEYRYR 510

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-----GILCNAFQDN 537
            +D    W++++  P  +  G I+ Y+G   DITE+K + E          A  D 
Sbjct: 511 HSDGNNTWVLVQAIPEMDEQGKIVGYLGTLTDITERKNAEEATNKINAQMQAIFDA 566



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/184 (9%), Positives = 53/184 (28%), Gaps = 23/184 (12%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
               G  ++I   L   + +      +V +  +    V++ +         +    ER  
Sbjct: 622 ALVSGEIVSIEYFLIIALQKRFFDARIVRLSPVETIAVVRDISDRKQTELALRESEERLK 681

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +  + + +   D+    +   P    + G     + G I                  +
Sbjct: 682 TIISTNPNGLLILDLQGKVLFVNPAAEILFGRKQEDLMGQILG----------------I 725

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              V         E  +     +   + +R+  +     +   ++    D+T+ +++ E 
Sbjct: 726 PIIVNNYS-----EIEILQPSGKLIIVRMRLVKIIWQEKNA--FLASLVDVTDIQQAQEQ 778

Query: 529 ILCN 532
           +   
Sbjct: 779 LKIL 782



 Score = 39.2 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRT 466
             A+  S   +   D+  +          +        + G    +L +  I+      T
Sbjct: 311 EFAITSSISAIAIGDLQGNLTYVNQAFLEMWRYDNDDEVLGKP--FLNFWQID--QQGET 366

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++ +     RG+   E   +  D       +    + N     +  +    D+++Q+ + 
Sbjct: 367 LIQTIRT--RGQWIGELIAKKKDKSLFKAQVSANLVKNEANIAIYIMISVMDVSQQQGTE 424

Query: 527 EGILCN 532
           E +   
Sbjct: 425 ESLQKL 430


>gi|313682755|ref|YP_004060493.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155615|gb|ADR34293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 923

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 144/600 (24%), Positives = 278/600 (46%), Gaps = 15/600 (2%)

Query: 365 DIIQPALVGGLVLIVILIG---FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
             I  +   G++LI   +G   F + +  LA       +    ER       S   +W+ 
Sbjct: 323 RFIAMSATFGMILIGAFLGSVFFLLRRTDLAIRTQQSNLKESEERFEQLAEQSRTFIWEV 382

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D        +  +  +LG  S  + G  + +  +     +++F+  +      +     +
Sbjct: 383 DSKGKLTYVSDTVEKVLGYRSDELVGK-KYFYDFHPPEGKESFKKTVCEVFEGKESFENF 441

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
                  + +  W+      M +++G  L Y G   DI+E+K S E I   +F D LT +
Sbjct: 442 TNLAVDREGETVWLTTNGIAMVSNDGTFLGYRGSNTDISERKYSEEKINGLSFFDQLTAL 501

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR   +DRL   +   + +      ++ ID+D +K +ND LG  +GD +L  + +R+  
Sbjct: 502 PNRTLLMDRLKQAMAAGSRNGKY-GALLFIDLDNFKTLNDTLGHEIGDSLLKLVAQRLSG 560

Query: 602 LLKFPDILARLSGNRFGIIL----ISENNSLKI-ADFAIAMRKSIAMPINLLEREITVTA 656
            ++  D ++R  G+ F ++L    +SE ++       A  +  S+  P  L       +A
Sbjct: 561 CVREGDTVSRFGGDEFVVVLGELSVSETDAATAGELVAEKILGSLNQPYFLGGINHRSSA 620

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG   +     ++ +++K A+LAMY +K  G N +  F  +   + +    ++ DL + 
Sbjct: 621 SIGITLFKGDDTSTDDLMKQADLAMYKSKDAGRNGLSFFDPNMEHTLKERALLEHDLRIG 680

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E  +  L Y   + +    I G EAL++W+HPK G IS  EF+ +AEE+ +I  +  ++
Sbjct: 681 IEEKQFILYYQAQV-VNHGHIAGAEALVRWEHPKRGIISPMEFIPVAEEIGLIIPLGEWI 739

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++     + +W     M  I I +N++++    N+  E + +++ +   +P ++KL  +E
Sbjct: 740 MKTACAQLAAWSHIPEMADITIAVNVSARQFSQNDFVEQVLSILHENGANPKKLKLELTE 799

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           S+ + + E     +  L+  G+S +LDDFGT  S LSYL  +P D +K + S +      
Sbjct: 800 SLFLQDVEEVIEKMVALKNEGVSFSLDDFGTGYSSLSYLKRLPLDQLKIDKSFVRDLLID 859

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                I +S I +A+++  ++IA+ +  +     L+ +GC   Q    + P+  +    L
Sbjct: 860 PNDAIICKSTIALAESMGLSVIAEGVETQEQHHALSEIGCFSYQGYWFSRPVPLSEFEAL 919


>gi|304309898|ref|YP_003809496.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1]
 gi|301795631|emb|CBL43830.1| hypothetical protein HDN1F_02470 [gamma proteobacterium HdN1]
          Length = 993

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 167/792 (21%), Positives = 317/792 (40%), Gaps = 19/792 (2%)

Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT--FAMAWVVLGYIS 233
           W P  +               G+ ++ AI   +      +     +    +    L  ++
Sbjct: 197 WLPTLFTSNAGQTLFKLLFEYGITAINAITALVLLRRMANKHDPASRESGLNITALFTVT 256

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL--HWNRWHAKVGYITFSGIA 291
           I         +  S           I  + +  +                +        A
Sbjct: 257 ILLILSQLCFSRYSNFNDYLLILGHIYKALAYFVIYRTIFVSTVELPFDHLHASQEQLKA 316

Query: 292 CIAILF-CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
            ++ L   +              +   ++       + H         +       +   
Sbjct: 317 TLSALPDLLFEVDQDGRYVDFHTSQDDLLFVSPKDFLGHTYDEVMPPAISAIIRKALQEA 376

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE--RQS 408
            +       +   +  +        V +         + ++ T   S+ I ++    + S
Sbjct: 377 SVQGISRGHQYAIDLPMGTRWFEASVSLKSTDSSGNQRFIMLTRDISERIEANMRVRQLS 436

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTI 467
            AV  S   +   DI        P  +T+ G ++  + G   R             +  +
Sbjct: 437 HAVEQSPLPIIITDINGHIEYANPAFSTVSGYSTDEVIGKNPRELQSKRTQESV--YVEL 494

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             + +  +    + EF  R  + + +     I P+   +G +  Y+GI  D+TE+K++  
Sbjct: 495 WQTLLKGQT--WKGEFVNRRKNGEHYVARAIISPVRRPDGSVSHYVGITEDVTEKKRTEA 552

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A  D LTG+ NR   +D   + L L+    +L   +M +D+D++K IND LG +V
Sbjct: 553 HIHKLAHYDPLTGLANRVLLVDHFDSALALAQRH-SLPLALMFMDLDRFKIINDTLGHSV 611

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+VL+ + ++    ++  D +AR  G+ F  I    N+  +  + A  + +SI+ P   
Sbjct: 612 GDEVLIHVAKQFKTSIRDEDTVARRGGDEFVFIFPGINS-QQARNVAQKLSRSISEPFRS 670

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
             +E+ +T+SIG A +         + + A++AMY AK  G N    +           +
Sbjct: 671 EHQELNITSSIGIAMYPDDGGDFETLARKADVAMYRAKQNGRNQFAFYTQEMQIHSLRIL 730

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +   L  A+E ++LYLVY P I L   EI G+EAL++W HP+WG IS  EF+ +AEE  
Sbjct: 731 QLGNGLRHAIERNQLYLVYQPQICLERSEICGVEALVRWRHPEWGEISPGEFIPVAEETG 790

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  ++L+   +    W  +   P I + IN+++    ++ L + +QA + +     
Sbjct: 791 AISQIGEWVLQTALQQAAEWVKRGL-PAIKVAINLSALQFRNSNLPDRIQASLEEYQVPA 849

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +E   M +P  +  +L  L  +GI + +DDFGT  S L+YL       +K + 
Sbjct: 850 SQVELELTEGTAMEDPLGAIEMLKNLHALGIQIAIDDFGTGYSSLNYLKKFQVSKLKIDQ 909

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +      ++  AI+ +II MA+++    IA+ +     +  L   GCD +Q  + + P
Sbjct: 910 SFVRDISVDQEDRAIVTTIIHMAESLGFRTIAEGVETHEQLTFLREHGCDEVQGYYFSKP 969

Query: 944 LGFNSILKLLKE 955
           L        L++
Sbjct: 970 LLPAQFEFFLEQ 981


>gi|291614482|ref|YP_003524639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291584594|gb|ADE12252.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1011

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 145/569 (25%), Positives = 262/569 (46%), Gaps = 18/569 (3%)

Query: 399  GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
                  ++  +A     S + +   D V   +        I G  +  + G   R     
Sbjct: 448  ASMHAKQQLRIAATAFESQEGMLVTDAVGAILRVNQAFTRITGYTADEVIGKNPRILNSG 507

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             H  D   ++ + +     R G  + E   R  +   +   + I  + ++ G+++ Y+  
Sbjct: 508  RH--DAYFYKEMWERIK--RTGEWEGEIWNRRKNGDVYPEHLTITAVKDAGGNVVNYVAT 563

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              DIT  K S E I   AF D LT +PNR+   DRL   L            ++ ID+D 
Sbjct: 564  LMDITASKASEEEIRNLAFFDPLTRLPNRRLLQDRLQQALASCGRSGK-SGAILFIDLDN 622

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKI 630
            +K +ND LG  +GD +L  +  R+   ++  D +AR+ G+ F ++L   ++     + + 
Sbjct: 623  FKNLNDTLGHDIGDLLLEKVAIRLSSCVREGDTVARIGGDEFVVMLEDLSDNILDAAEQT 682

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                  +  S+ +P  L       + SIG   +  +  +  E+LK A++AMY AK  G N
Sbjct: 683  ESVGSKILASLNVPYQLGIHTYDNSPSIGATLFNDNHNSIDELLKQADIAMYQAKKAGRN 742

Query: 691  HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +  F     +S   R+ ++ +L  A+E  +  L Y   +       +G EAL++W HP+
Sbjct: 743  TMRFFDPRMQQSLSARLALELELRKAIEKDQFQLYYQIQVD-ETHRPLGAEALLRWMHPE 801

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G ++ +EF+ +AEE  +I  I  ++LE     + +W        + + IN+++K     
Sbjct: 802  HGLMAPAEFIPMAEETGLIVPIGWWVLETACTQLKAWEKDPLTRNLVLSINVSAKQFHQP 861

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +  + +QA +      P+ +KL  +ES+++ N + +   +  L+K G+  +LDDFGT  S
Sbjct: 862  DFVDQVQAAVDHYGIDPALLKLELTESILLENVDTTIKRMSALKKTGVGFSLDDFGTGYS 921

Query: 869  LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L YL  +P D +K + S M   T     +AI+ +II MA++++  +IA+ +  E   + 
Sbjct: 922  SLQYLKRLPLDQLKIDQSFMQEITSDSSDMAIVSTIIAMAQSMQMGVIAEGVETEEQRQL 981

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R GC++ Q    + P+      KLL  
Sbjct: 982  LLRKGCNHFQGYLFSKPVPVEQFEKLLHR 1010



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 5/150 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +++H       S  +    +R         + +   D   + V        +L   + ++
Sbjct: 316 IVRHAQRLQATSNDLQESEKRLRTIFETEPECIKVVDRNGELVEMNQAGLAML--EAATL 373

Query: 446 H-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                +  + Y+   D+  F  +    +      L  EF++       H +     PM +
Sbjct: 374 EEARQKKLIDYVAPEDQAAFLALHRRVMNGESAVL--EFKITGLKGTLHHLETHATPMPD 431

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +NG+I   +GI  D+T    + + +   A 
Sbjct: 432 ANGNISLLLGITRDVTASMHAKQQLRIAAT 461


>gi|226939063|ref|YP_002794134.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9]
 gi|226713987|gb|ACO73125.1| Sensory box/GGDEF family protein [Laribacter hongkongensis HLHK9]
          Length = 1041

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 154/580 (26%), Positives = 281/580 (48%), Gaps = 11/580 (1%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444
            + + V      +  + +   R  LA+  SG  +++ ++    +T T  I   L +     
Sbjct: 442  IARDVSELKQAAAALANSDARLRLALQASGTGLYELELATGAITITGAIRQRLDIRVPEQ 501

Query: 445  MHGPIRNWLPYIHINDRDNFRTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               P   WL ++H +D+   R   +      +   RL+  FRV     +  W+  R + +
Sbjct: 502  QPIPAALWLAWVHPDDQARIRQAFEHWQQEPHAPDRLETSFRVCPPGGRMRWVHARGQYI 561

Query: 503  SNSNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +      R +G  ND+T+QK++ E I   A  D LTG+ NR +   RL   +      
Sbjct: 562  AAAEDTAAARLVGTVNDVTDQKENEEQIERYAHFDALTGLANRHALYRRLGQAITSVHQH 621

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +    V+ +D+DK+K IND LG AVGD VL  +  R+ +     DILARL G+ F ++L
Sbjct: 622  QH-PLAVLFVDLDKFKTINDTLGHAVGDVVLREVAGRLSDFAGPDDILARLGGDEFLLVL 680

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                +    ++ A  +  ++++P+ +  RE+  T +IG + +      + ++++NA++AM
Sbjct: 681  PG-ADERAASEVAACILTAMSVPVRVDGRELPTTPTIGVSLYPRDGEEADDLIRNADIAM 739

Query: 682  YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK RG N  + +      +  +R+ ++ +L  A    E+ L Y P I + D  +VG E
Sbjct: 740  YQAKARGRNTFQLYTPDMNAAAAERLQLQGELRNAHLRGEIMLHYQPQIDVTDGHVVGCE 799

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W HP  G +S   F+ +AEE  +I  +  + +    R  + W+     PP+ + +N
Sbjct: 800  ALMRWKHPTLGMVSPGRFIPLAEESGLIITLGNWAIREACRQAMVWQRAGL-PPLTVAVN 858

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++      +     +   ++ T   P  ++L  +ES+VM + E+    L  L+ +G+ L+
Sbjct: 859  LSGCQFQQSNFTAVVADALADTSLPPQYLELELTESIVMHDVEQVIATLTELKALGVQLS 918

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S L+YL   P D +K +   +    +     AI+R+II + K +   +IA+ 
Sbjct: 919  IDDFGTGYSSLNYLKRFPVDLLKIDQGFVRDVETDPSDAAIVRAIIALGKILNLRLIAEG 978

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +  +  +  L   G D+IQ  + + PL    +   L +R 
Sbjct: 979  VETQGQLDYLHAAGVDFIQGYYFSRPLPAEDMATYLAQRL 1018



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 19/212 (8%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG---I 400
            +L   W  G  +AI       ++       +    +LI   +    L  G   +    +
Sbjct: 270 RLLTLTWLSGQSLAIGISRSYSVLLKRWYQDMRAKALLISLLLCGSGLLLGVLLRQLRRV 329

Query: 401 FSDGERQSLA----VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
                +  L       G   I+W  D+              LG     ++G     L  I
Sbjct: 330 EHSERQLRLTQYSVDHGVDLILWV-DLNSRVRYANLRAQKQLGWHPHELYGRP---LSRI 385

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +        L   +  R   +  E      + Q   + +    ++++ GD L  + IA
Sbjct: 386 APSLGGAAWMSLQQRIA-RGDNVTLETSFSCRNGQTLAVEVTASVLTHTEGDGLLCL-IA 443

Query: 517 NDITEQKK------SLEGILCNAFQDNLTGIP 542
            D++E K+      + +  L  A Q + TG+ 
Sbjct: 444 RDVSELKQAAAALANSDARLRLALQASGTGLY 475


>gi|39997025|ref|NP_952976.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
 gi|39983913|gb|AAR35303.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
          Length = 660

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 148/622 (23%), Positives = 273/622 (43%), Gaps = 19/622 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            +   +  T  +D      A       I  ++    I+++L        +         A
Sbjct: 40  LVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLLRAKLAFDELHKSRTMLYNA 99

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +    W++D+  +  T + +   I G+         R  +  +H  DR   +  +  
Sbjct: 100 QRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQ 159

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 G    + R+   D     +      +S  +G   R +G  +DITE+  + E I 
Sbjct: 160 AFRTGVG-YCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIR 218

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LT +PNR  F +R+   L  +  +      V+ +D+D +KK+ND LG   GD 
Sbjct: 219 YLAHHDTLTALPNRFQFEERMEQALAFAQRN-GFMMAVLFLDLDHFKKVNDTLGHHAGDR 277

Query: 591 VLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMR 638
           +L     R+ + L+  D             ++R+ G+ F I+L    +    A  +  + 
Sbjct: 278 LLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILLTDLAHPQDAARVSQRII 337

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +++    +   E+ V ASIG + + S      ++L+NA+ AMYHAK  G N  + +  S
Sbjct: 338 TALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGS 397

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ ++ +L  A++ +E  L Y P +      +VG+EAL+ W  P    +   +
Sbjct: 398 MNAMALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDD 457

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I +I  ++L       ++W  +   PP+ + +N++S       L E ++ 
Sbjct: 458 FIPLAEETGLIASIGEWVLWNACAQAVTWLHEGL-PPVRVAVNLSSLQFRSRRLAELVRK 516

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T   PS ++L  +E V M N E + +++  L+K+G+  ++DDFGT  S LS L   
Sbjct: 517 VLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSVDDFGTGYSSLSRLSRF 576

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +   +    A  +  +II MA+N+   +IA+ +        L   GC  
Sbjct: 577 PLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAE 636

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q    + PL  ++    L+ R
Sbjct: 637 VQGFLFSQPLNPDAAAAFLRAR 658


>gi|83311376|ref|YP_421640.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82946217|dbj|BAE51081.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 831

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 160/619 (25%), Positives = 276/619 (44%), Gaps = 11/619 (1%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
                +   +                I   A+  G   +V + G  +I    A     + 
Sbjct: 207 FPNGSVRGAVGVSVPMQPYQAMEGQAIRIQAISHGAFWLVGVAGILLIGRRSAGRLTEKA 266

Query: 400 IFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +  +  R +      + +     D     +   P    + G     + G     +   H 
Sbjct: 267 LADEETRLAAHVFSNALEATLITDPKGRILRINPMFTELTGYGEAEVVGGNPRIIRSNH- 325

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D D +  I  +    R GR Q E   R  D Q       I  + +  G I  +IG   D
Sbjct: 326 HDADFYAEIWQAIF--RDGRWQGEIWNRRKDGQVFVAWESIVAVYDEAGAIRYFIGSFRD 383

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITEQ ++   IL  A  D LT +PNR  F DRL   +  +   D  +  ++ +D+D +KK
Sbjct: 384 ITEQVEAQRHILRLAHYDVLTDLPNRVLFQDRLERAVVHALRHDR-QAALLFLDLDGFKK 442

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GDD+L  +  R+   ++  D +ARL G+ F +IL   + +   +  A  + 
Sbjct: 443 VNDTMGHRAGDDLLKEVAVRLRGCVRMTDTIARLGGDEFTVILDEISAANDASMVADKIL 502

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            S+  PI +  R++ +  SIG + +     +  E+LK+A+ AMY AK  G      +   
Sbjct: 503 ASLHAPIFIDGRDVFIGTSIGISLFPIDGTSGDELLKHADTAMYQAKAAGKGRFNFYSAE 562

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R+ ++  L  AVE  +  + Y P   L    + G EAL++W HP+ G IS  +
Sbjct: 563 MTKREEHRLELETALRQAVEEGQFQVHYQPQKNLATNRVSGFEALVRWQHPRLGMISPVD 622

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE+ +I  I++F++ +  R    WRDQ     I + +N++  +   ++L E ++ 
Sbjct: 623 FIPLAEEMHLIDRIDMFVMRQACRKGRQWRDQGYD--ICMAVNLSGVNFSRDDLPEQVRQ 680

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T +    ++L  +ES V+      R +L RLR +G+ L +DDFGT  S LSYL  +
Sbjct: 681 VLEDTGFPAENLELEITESFVIDLEVDQREVLQRLRALGVKLAIDDFGTGYSSLSYLKRL 740

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K + S +       + + ++ SII +A ++   ++A+ I     +  L    CD 
Sbjct: 741 PVNTLKIDRSFVRDIARDSRDMMLVSSIIGIAHSLGLKVVAEGIEERDQLAILLSQECDE 800

Query: 935 IQDSHVASPLGFNSILKLL 953
           IQ   +A P+        L
Sbjct: 801 IQGYLIAKPMPAEQAGIFL 819


>gi|95929050|ref|ZP_01311795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134951|gb|EAT16605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 766

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 146/585 (24%), Positives = 266/585 (45%), Gaps = 14/585 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T    ++      +       R   ++  + + ++  +     +         LG ++ 
Sbjct: 191 ITGAMALVQDITEKRKTDEVLRRFRFSIEQASEAIFWINDEGRFLFVNDQACHSLGYSAS 250

Query: 444 SMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +   +  W   I  +   + +    +      +     E R +  D +   + +     
Sbjct: 251 ELE-SLHLW--DIDPDFPAERWAEQWERMKSDPKQVF--ETRHQRKDGRIFPVEVSASQC 305

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +N +   ++    DIT +KK  + +   +  D LTG+ NR    DR+   +  +    
Sbjct: 306 LFNNEE--NHVAFVRDITIRKKYEKELEHQSNHDALTGLANRVLLDDRIQQAIVHAERAQ 363

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V ++D+D++K IND LG + GD VL+++  R+   +   D L+RL G+ F I++ 
Sbjct: 364 R-NTAVFLLDLDRFKVINDSLGHSQGDAVLLAVAERLSACISPGDTLSRLGGDEFAIVMT 422

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N+       A  +  +   P  L  RE+ +T SIG + +      S ++L++A+ AMY
Sbjct: 423 HVNHPADARIMAQKILNAFEQPFPLGNRELRITTSIGASLYPRDGEQSEDLLRHADAAMY 482

Query: 683 HAKHRGG--NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +GG      S  + +     + ++ DL  A++     L Y P +++   +I G EA
Sbjct: 483 QAKKQGGNGFQFCSEEMDTRAHKALELEGDLRQALQLGSFVLHYQPKVKIASGKIDGCEA 542

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP  G IS  +F+ +AEE  +I A+  ++L    R   +W+ Q   PPI I +N+
Sbjct: 543 LVRWNHPDKGMISPDDFIPLAEETGLIIALGEWVLREACRQFKAWQAQGL-PPIKIAVNL 601

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++  L ++  E +Q ++ +    P  + L  +ES+VM +P+R   LL  L++IG +L+L
Sbjct: 602 SARQFLQSDFVESIQTILHEFDIDPHWLDLELTESMVMEDPDRIAKLLAELKQIGFALSL 661

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P D +K + S +        A  +  S+I +A ++    IA+ +
Sbjct: 662 DDFGTGYSSLNYLRRFPIDCLKIDRSFILDVASDATAASVANSVIGIAHSLGIHAIAEGV 721

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                   L    CD IQ    + PL  N +  LL    P    T
Sbjct: 722 ETREQYAFLAMCECDSIQGYLFSKPLPANDLAALLANPTPFKPTT 766



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 21/171 (12%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +Q       V    ++ F ++++ +    + + +F         V      +W  D   +
Sbjct: 50  LQTWKGSVFVFCTAMVLFFLLRNAIKRALYGEALFRK------VVETIPTGIWVVDREGN 103

Query: 427 RVTTTPDIATIL---GLAS-------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V        +L   G+ +         + G   +    +H ++       +   +    
Sbjct: 104 VVDCNFAAHGLLQEFGIQAYNDIQGYAEIQGWWSDNGQPVHPDEWG-----ISRSLSRGE 158

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             L+ +  +   D     ++    P+ + NG I   + +  DITE++K+ E
Sbjct: 159 TCLREKIDIACTDGVRRTVLYTSLPLKSENGAITGAMALVQDITEKRKTDE 209


>gi|332701949|ref|ZP_08422037.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552098|gb|EGJ49142.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 736

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 159/575 (27%), Positives = 277/575 (48%), Gaps = 7/575 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++Q V  +    + +    +R S     +G  +   D     +        ILG +   +
Sbjct: 156 IVQDVTESRRVKRRLLGSEQRFSTLFEHAGFGIALIDPNGRILDMNKAGVAILGYSLNEI 215

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                ++  YI+  D    +         RR   +   R    D    W    +  +   
Sbjct: 216 --RALHYSDYIYPEDVQRTKQFFRELQAGRRDYFELTKRYLRKDGALVWGRQIVTLVRKE 273

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N +   +I +  DITE +++ + +   AF D LT + NR  FLDRL T +     + +  
Sbjct: 274 NDEPDYFISMLEDITEHRRADDMLRHLAFHDALTELANRALFLDRLGTAIRRGKRNPDFI 333

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            +V+ +D+D++K +ND LG   GD +L  +  R+ E ++  D LAR  G+ F I+L   +
Sbjct: 334 FSVLFLDLDRFKLVNDSLGHPAGDAMLCEIAARLTECVRDSDTLARFGGDEFAILLDGLS 393

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           + L+       +RK++A P  L + E+   ASIG    T    +  E++++A++AMY AK
Sbjct: 394 DPLETLKIIERIRKALARPFFLDDHELFAGASIGVVLDTERYDSPEEIVRDADIAMYRAK 453

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G    E F  R+     + + ++ DL  A+E  E  L + PII L    I G+EALI+
Sbjct: 454 ENGNAVYEIFDSRMHEQAREVLRMETDLRKALERGEFELYFQPIISLRGNRITGMEALIR 513

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802
           W HP+ G +S  EF+  AEE  +I  I+ ++L      +  W ++      + + IN+++
Sbjct: 514 WRHPERGLVSPGEFIPQAEEAGLIFDIDRWVLANACSILDLWSERYTAAHDLLLNINLSA 573

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K  L  +  +    ++  T   PSR++L  +E++++   E     L +LR +G+SL LDD
Sbjct: 574 KYFLKRDAVDDFSEILRVTGVRPSRLRLEITENLILDGDEHVTGKLLKLRAMGVSLALDD 633

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   PFD +K + S +    EK   +AI++S++ + KN+   ++A+ +  
Sbjct: 634 FGTGYSSLSYLVRYPFDAIKIDRSFILSMLEKSGDLAIVQSVLALGKNLGLEVVAEGVET 693

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                +L   GCD+ Q      P+  + ++ LL +
Sbjct: 694 LEQAAKLREWGCDFAQGYFYFRPMPASDVMDLLAK 728


>gi|253996222|ref|YP_003048286.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982901|gb|ACT47759.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 699

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 137/574 (23%), Positives = 274/574 (47%), Gaps = 13/574 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           IQ++       Q + +   +       + + ++        +     +A + G +    +
Sbjct: 122 IQNIAKRKGIEQSLLAAELKYRSIFENTLEGIFQTTADGHYLIVNQSLAHMYGYSSPDEL 181

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +    ++     R+ F       +       ++E  V   D    W+    R ++
Sbjct: 182 IHAFNSIQEQLYVKPGRREEFVQ----LLKENESVEKFESLVYRKDKSTIWISENARVVN 237

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G+IL Y G   +IT +K   E +   A  D+LTG+PNR    DRL   ++ +    N
Sbjct: 238 DESGNILYYEGTVENITARKNYEEKLEYQAMHDSLTGLPNRNMLNDRLQLCINFANRYKN 297

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V  +D+D++K IND +G  VGD +LV + +R+   ++  D + RL G+ F I+L +
Sbjct: 298 -KMAVAFLDLDQFKLINDSMGHEVGDQLLVIMAKRLSSAVREIDTVVRLGGDEFVIVLTN 356

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +++  I      + +++A+P+ +   +  VT SIG + +    + ++ +L+NA+ AMY 
Sbjct: 357 IDDTNDIFMSMQRILEAVAVPLTINNMDYLVTCSIGVSIYPDDGLDANLLLRNADTAMYK 416

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+ + +  +     ++RV ++ +L  A+E  E  L Y P +     ++ G EAL
Sbjct: 417 AKKAGRNNFQIYTQALNAALTERVTLEYNLRQAIELEEFILHYQPKVDFATGKVCGAEAL 476

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W       IS  +F+ IAEE  +I+ I  ++L        + + +     + I +N++
Sbjct: 477 IRWQPEGQDLISPLKFINIAEETGLIETIGEWVLATACYKAKALQQKTG-LHVPIAVNVS 535

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +    + L   ++ +++ T   PS ++L  +E+ ++ +  +    L  L+K+G+ L +D
Sbjct: 536 PRQFRQSNLANTIKKILAVTQLDPSYLELEITENTLIDDSSKFIETLHSLKKLGVKLAID 595

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D +K +   ++   E     AIL++I+ + +++   +IA+ + 
Sbjct: 596 DFGTGYSSLAYLKDFPIDRLKIDKVFVSSIEEDPTNKAILKAIVVLGQSLGIEVIAEGVE 655

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +     L  +GCD +Q  + + PL      + L
Sbjct: 656 TQYQYDYLKSIGCDQLQGYYYSKPLPEQQFEQFL 689



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 31/221 (14%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           +D     V  +     + G A   + H    ++       DR   R  + + +     R 
Sbjct: 27  YDQDWTMVFVSNGCKELTGYAPEDLLHNQYISYEAVTFAEDRVMVRDTIQNALTEGN-RY 85

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E+R+  AD    W++ R  P+ N+ G ++   G   +I ++K  +E  L  A      
Sbjct: 86  EVEYRINHADGSVIWVLERGNPIYNNAGMVIALEGYIQNIAKRK-GIEQSLLAAE----- 139

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG----DDVLVSL 595
            +  R  F + L  I   +A                Y  +N  L    G    D+++ + 
Sbjct: 140 -LKYRSIFENTLEGIFQTTADG-------------HYLIVNQSLAHMYGYSSPDELIHAF 185

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
              I E L       R     F  +L    +  K       
Sbjct: 186 -NSIQEQLY--VKPGRR--EEFVQLLKENESVEKFESLVYR 221


>gi|75908922|ref|YP_323218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Anabaena variabilis ATCC 29413]
 gi|75702647|gb|ABA22323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Anabaena variabilis ATCC 29413]
          Length = 585

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 153/573 (26%), Positives = 269/573 (46%), Gaps = 14/573 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +     +    +  S DI+  ++        +P +  ILG     + G    
Sbjct: 10  DGNQAEAALRESEAKFRSLIQNSSDIIGIFEPDGTIRYESPSVERILGYKPEELVGKNA- 68

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +IH +D        +  +      +  E R R  D  + ++      +  +   +  
Sbjct: 69  -FDFIHPDDIAGSSESFNYLIQNLGATVLVESRFRRKDGSWCFLESTGSNLL-AEPSVKG 126

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  + DIT++K + E ++ +A  D LTG+PNR  F+DRL   ++ +    +    V+ +
Sbjct: 127 IVINSRDITDRKLAEERLVHDALHDVLTGLPNRVLFIDRLRRAVEYAKRYSDHLFAVLFL 186

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  +GD +LV + +R+ E L+  DI AR  G+ F I+L    +     
Sbjct: 187 DLDRFKFINDSLGHTIGDQLLVIIAQRLIECLRPTDIAARFGGDEFIILLEGIQDISDTV 246

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +++ + +P++L   EI  TASIG +   +      ++L+NA++AMY AK RG   
Sbjct: 247 RVVERIQEKLLVPVDLSGHEIFTTASIGISLSATGYEQPEDLLRNADIAMYRAKARGKAC 306

Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            E F          R+ ++ DL  A+E  E  + Y PI+ L    I+G EAL++W HP+ 
Sbjct: 307 YEIFNSDMHVQIVERLQLENDLRKAIERHEFLVYYQPIVSLASGRIIGFEALVRWLHPEQ 366

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-------ANMPPIFILINIAS 802
           G +   EFM IA+E  +I  I+ ++L    R    W++Q        +  P+ I IN+ S
Sbjct: 367 GIVFPEEFMPIAQETGLIIPIDAWVLREACRQTRQWQEQIPSQSVNLHQQPLSISINLCS 426

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                 +L E +  ++  T      +KL  +ESV+M N E +  +L +LR +GI L +DD
Sbjct: 427 SRFSQKKLLEDINQVLQDTGLDAQSLKLEITESVIMENGENATTMLYQLRNLGIELAIDD 486

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L  L   P + +K + S +   G     + I+ +I+ ++  +   + A+ +  
Sbjct: 487 FGTGYSSLGRLHNFPINGLKIDQSFVSGRGVEAGNLHIVETIVTLSSKLGVDVTAEGVET 546

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++ L  + C+Y Q    + PL  +S   L+
Sbjct: 547 PAQLQRLRELKCEYGQGYFFSEPLDSDSAKALI 579


>gi|253996421|ref|YP_003048485.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983100|gb|ACT47958.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Methylotenera mobilis JLW8]
          Length = 1329

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 150/563 (26%), Positives = 277/563 (49%), Gaps = 13/563 (2%)

Query: 401  FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             S  E+  L       S D +   D     ++      TI G  +  + G   + L    
Sbjct: 773  LSAEEKLRLNAKVFESSRDGIVITDKNNKIISVNNAFTTITGYEAKEVVGKNPHMLASEK 832

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +   ++F + +   +    G  Q E   +  + + +   + I  + +++G I ++IGI +
Sbjct: 833  LE--ESFYSAMWDSI-GVMGYWQGEVINQRKNGEIYTQWLSISTIKDADGKISQHIGIIS 889

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DI+E+K + E I   +  D LT +PN+    DR    L  +        T+M +D+D++K
Sbjct: 890  DISERKVAEERIQFLSNFDPLTNLPNKNLLNDRTKLALATAKRL-KTAVTLMFVDLDRFK 948

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             IN+ LG ++GD V+  L  R    ++  D + R  G+ F ++L +  ++   A  A  +
Sbjct: 949  FINESLGPSIGDQVVKELAERFVAYMRPEDTVCRQGGDEFILLLPN-TDAEGAAHVAKKL 1007

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
               +A P N   ++I +TASIG +++     +  ++ ++A+ A+Y AK+ G N+ + F  
Sbjct: 1008 LDIVAQPFNFHGQKIVLTASIGISAYPQDGESFEQLAQSADAALYRAKYEGRNNFQFFAR 1067

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            ++     D ++++ +L  A+E+ E  L Y P       +I+GLEALI+W HP+ G +S +
Sbjct: 1068 QMHEQAHDILLLESELRSAIEHEEFLLYYQPQYDSKTSKIIGLEALIRWQHPEKGLVSPA 1127

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+ IAEE  +I  I  ++L    + + SW++      + + +N++      + L   + 
Sbjct: 1128 VFIPIAEESGLIAEIGDWVLRTAVKQLASWQEAGLG-AVPVAVNLSVVQFHQDTLYGSVC 1186

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++  T   PS ++L  +E + M + ER+  +L +L  +G+ L++DDFGT  S LSYL  
Sbjct: 1187 QILRDTKVDPSMLELELTEGIAMEDSERTLNVLNQLNSLGVRLSIDDFGTGYSSLSYLKK 1246

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
               D +K + S + G     +  AI+ +II MAK++    IA+ +     +  L    CD
Sbjct: 1247 FKIDKLKIDQSFVRGIGSHPQDAAIITAIISMAKSLSFKTIAEGVETLEQLNFLIANSCD 1306

Query: 934  YIQDSHVASPLGFNSILKLLKER 956
             IQ  + + PL    + KLL  +
Sbjct: 1307 EIQGYYFSKPLPSTEVTKLLANQ 1329



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             + +I  I G A          WL +IH  D                G L +++R   A
Sbjct: 682 FISENIYQITGYAKDEWLKDNF-WLDHIHTEDLAAALDSKKILFE--TGSLNHQYRFMHA 738

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  + W+  ++    ++NG  L  +G   DIT++  + E +  NA
Sbjct: 739 NGGYIWIEDQLTLTRDNNGKPLEIVGAWLDITDRLSAEEKLRLNA 783



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 75/245 (30%), Gaps = 31/245 (12%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
               +ERA+  I +     I   G    +  +         L  G  ++V L+G T+   
Sbjct: 280 SKHNHERALTQIISR---VIEVGGTKWTLFFQTTPAFETRILPYGKPMLVALLGSTLTIL 336

Query: 390 VLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                +F        E R       + D V   D     +        +LG   G + G 
Sbjct: 337 SAFLAWFLLSSRQLAESRYQKLFDQASDGVLVLDHQHQFIAANLAATNMLGYQQGELLGM 396

Query: 449 --IRNWLPYI--HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 +  +  H     N  + +           + E++ R  D       +  R +  
Sbjct: 397 RLPDVLINNVTKHPEFNTNLISDI---------PTKDEWQYRRKDGSRFIAEVNCRKL-- 445

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              D   Y  I  D+TE+K +   IL       LT +   Q+  + +   +     D  L
Sbjct: 446 ---DKNYYFTIIRDLTERKLAENRILH------LTQLY--QALSE-VNQAIVRMGDDHEL 493

Query: 565 RPTVM 569
            P V 
Sbjct: 494 FPVVC 498


>gi|291613922|ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291584034|gb|ADE11692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1149

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 146/587 (24%), Positives = 270/587 (45%), Gaps = 14/587 (2%)

Query: 376  VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            +L+ + +  +            + +     + SLAV  S + +   D+  +      +  
Sbjct: 569  LLLEMAMDISFALERFDAETERKKMSETLLKLSLAVEQSPNSIVITDLDANIEYANSNFT 628

Query: 436  TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFH 493
             + G +   + G    ++           +   +    +  R    + E   R  D   +
Sbjct: 629  KVTGYSLDEVLGKNPRFMQS-----GKTPKATYEDMWAHLTRGEPWKGELFNRRKDGTEY 683

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
               + I P+S  +G ++ Y+ I  DITE++ + E I      D+LTG+PNR    +R   
Sbjct: 684  IESVLISPVSQVDGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGLPNRTQLNERFKY 743

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             L L+      + TVM +D+D +K IND LG ++GD +L+ + +R+ E L+  D ++R  
Sbjct: 744  ALSLAQRSGE-QMTVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKETLRDEDTVSRQG 802

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+ F +IL    +    A  A  + ++++      + E+  T SIG A +         +
Sbjct: 803  GDEFILILPG-TDENGAAHVAAKLMEAVSQAFQFEQHELVATCSIGIAIYPHDGENFETL 861

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
             KNA+ AMY  KH G N    F           + +   L  A+   +L+L Y P I   
Sbjct: 862  SKNADTAMYRVKHDGRNGFCFFTSEMQAHSARTLQLGNALRHALTRGQLHLHYQPQISTQ 921

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            D  +VG EAL++W HP+ G+IS +EF+ IAE+   I  I  ++L    + +  W D    
Sbjct: 922  DGHVVGAEALLRWQHPELGSISPAEFIPIAEDNGQIIPIGEWVLRTAIKQLKDWMDSGL- 980

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            PP+ + +N+++     + L E + +++ ++      ++L  +E+V M +P+ +  ++ +L
Sbjct: 981  PPMIMAVNLSAAQFRQSNLMELVTSILDESKVPHRYLELELTEAVAMDDPQLAIGVMDKL 1040

Query: 852  RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
               GI +++DDFGT  S LSYL       +K + S +          AI+ +II MA ++
Sbjct: 1041 HTGGIKMSIDDFGTGYSSLSYLKRFKVYKLKIDQSFVHDITDDPDDKAIVAAIINMASSL 1100

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                IA+ +     +  L   GC+ +Q  + + PL     +  L+++
Sbjct: 1101 GMQTIAEGVETAGQLSFLRLQGCNEVQGYYFSKPLPAEQFVSYLQKQ 1147



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 69/214 (32%), Gaps = 18/214 (8%)

Query: 360 KRLDNDIIQP---ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            R    I+ P     +GG+  +++     ++         +Q +     +    +    D
Sbjct: 247 GRTPASIVPPVVWRTLGGVSGVLLFSLLGLLFMRKQIRLRTQQLADSSSQLRATLDAIPD 306

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           ++++  +     +       +L   + S  G        +  +  D   + L        
Sbjct: 307 LLFEIGLDGHFYSYHSSRNDLLTAPATSFIGKKIG--DVLPPDAADICMSALQEA--NMT 362

Query: 477 GRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           GR     + +     +  W  + I    ++     R+I +  D+T++K +   IL     
Sbjct: 363 GRSNGKTYALSLPQGES-WFELSISKKQDAKNQAPRFIVLVRDVTQRKVNETHILR---- 417

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             LT +    + L +    +   +    L P + 
Sbjct: 418 --LTKLY---AALSQCNQAIVRCSNKTELFPIIC 446


>gi|253999408|ref|YP_003051471.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986087|gb|ACT50944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 718

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 151/577 (26%), Positives = 278/577 (48%), Gaps = 13/577 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           IQ +       Q +     R       S + ++        +   P +A I G  +   +
Sbjct: 144 IQDITQRKLNEQALQEAERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGYESPEEL 203

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              + N    ++     R  F T++   +  R   + +E ++   D    W+    R + 
Sbjct: 204 IQSLNNIAQQLYVQPESRQAFLTLMQ--LEDR--VVNFESQIYRRDGSTIWISENARAVR 259

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N  G +L + G   DITE+K     I   A  D+LTG+PNR    DRL   +  +    +
Sbjct: 260 NDAGKLLYFEGTVEDITERKSYNALIEYQATHDDLTGLPNRTLMQDRLLQAISYADRTAS 319

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V+ +D+DK+K IND +G  +GD +L+++ RR+   ++  D +AR  G+ F ++L +
Sbjct: 320 -KLAVVFVDLDKFKDINDSMGHFIGDQLLIAMARRLESCIRDSDTVARPGGDEFVLLLSN 378

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +    ++     +    + P ++  ++ TVT+SIG + +     TS  +LKNA+ AMY 
Sbjct: 379 IHGMDALSQTLQRVLALTSEPCSIEGKDFTVTSSIGISLYPDDGKTSETLLKNADTAMYK 438

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+ + +         +R+ ++  +  A+ ++E +L Y P + L  + I G+EAL
Sbjct: 439 AKQEGKNNFQFYTRELNSILVERLEMEYQMRNALGHNEFHLHYQPKLNLRTQRITGVEAL 498

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W +P+ G IS + F+ IAEE  +I+ I  ++LE+   +      Q +   + + +N++
Sbjct: 499 IRWHNPRQGLISPNRFIPIAEESSLIEQIGSWVLEKACME-SIALSQLSGYDVPVSVNVS 557

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +    + L   +  ++ +T   PS ++L  +E  +     +   +L  L+ +GI L +D
Sbjct: 558 PRQFQQSNLVGNISRVLQETGLKPSLLELEITEGTLADTSPQFIKVLNDLKGLGIKLAID 617

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL + P D +K + S + G        AIL++I+ +  N+   ++A+ + 
Sbjct: 618 DFGTGYSSLGYLKHFPIDNLKIDRSFVMGLESDTANQAILKAIVALGHNLGINLVAEGVE 677

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E     L  +GCD +Q    + PL F+   KLL  +
Sbjct: 678 TERQRDFLLSIGCDEMQGFLFSQPLPFDQAGKLLLAQ 714



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 25/179 (13%)

Query: 427 RVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            +  +     + G     +      ++       DR   R  +D  +  RR R + E+R+
Sbjct: 55  MLFISDGCFDLTGYRPDELLHNGCTSFEELTLPEDRARIRNTVDDALS-RRERFEIEYRI 113

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D Q  W+  R   + N  G +    G   DIT++K   E  L  A +        R 
Sbjct: 114 MTIDGQIRWVNERGTGIFNPQGQVEALEGFIQDITQRK-LNEQALQEAERRY------RN 166

Query: 546 SFLDRLTTILDLSATDD--NLRPTVMVIDIDKYKKINDVLGIAVGDDV---LVSLTRRI 599
            F + +  I   S      N  P +  I            G    +++   L ++ +++
Sbjct: 167 IFENSIEGIFQTSQDGQYINANPALARI-----------YGYESPEELIQSLNNIAQQL 214


>gi|88857654|ref|ZP_01132297.1| sensory box protein [Pseudoalteromonas tunicata D2]
 gi|88820851|gb|EAR30663.1| sensory box protein [Pseudoalteromonas tunicata D2]
          Length = 725

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 146/585 (24%), Positives = 270/585 (46%), Gaps = 9/585 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++     ++ V       Q +  + +R  LA+  SG  +WDWDI+ D V  +   + +LG
Sbjct: 139 LIAFIGCVEDVTELCLSQQQLKDNQQRYELALKSSGAGIWDWDILNDVVHYSAKFSDLLG 198

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +        +W   IH +D D F T L + +         E R+ +   +  W  +  
Sbjct: 199 FDNLLFGTSWSSWTDQIHPDDLDIFETQLQNHLDDADKPFNIECRLISQKKKVLWFTVVG 258

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + + +G   R +G   DIT + +S + I   A  D+LTG+PNR  F +RL   +  S 
Sbjct: 259 EALRDEHGYPTRMVGSMVDITLKHQSQQMIWQQANFDHLTGLPNRNMFTERLKQEISESK 318

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                +  +  ID+D +K++ND LG   GD +L+ +  R+  +L+  D + R+ G+ F  
Sbjct: 319 RYQQ-KFALFFIDLDHFKEVNDTLGHGAGDQLLIEVAERLQLILRESDTIGRIGGDEFTA 377

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++   N +  I   A  + ++I +P  +    I ++ASIG   +        E+LK A+ 
Sbjct: 378 LIPHINQTCDIDSLAQKLIQTIELPFYIDGESIFISASIGITLFPDHSEKIDELLKFADQ 437

Query: 680 AMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY +K  G       +F +         + ++L LA+     ++VY PI+ L   +I  
Sbjct: 438 AMYRSKENGRKRFSYFTFAMQEQADHTRNLTQELHLAIIEQHFHVVYQPIMALPSRKITK 497

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++WDHP+ G IS ++F+ +AE   +I  I  ++    A+  + W+ +   P   I 
Sbjct: 498 AEALVRWDHPELGLISPADFIPLAERSGVIIEIGNWVFYNAAKQALKWQQE-IDPSFEIS 556

Query: 798 INIASKDLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           IN +     + +    +    L+         I +  +E +++ + +  +  L   +  G
Sbjct: 557 INRSPVQFQNPDPNADQKWVELLKNLGLIKG-ICIEITEGLLLDDTQGIKDKLLYFQNNG 615

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           + ++LDDFGT  S LSYL     + +K + + +      +   A+  +II MA  +   +
Sbjct: 616 MDISLDDFGTGYSSLSYLTKFDINFLKIDRAFINDLEHNQNNQALCEAIIVMAHKLGLKV 675

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           IA+ +  +  +  L +  CD++Q   ++ P+   +    LK   P
Sbjct: 676 IAEGVESQRQLDFLAQAQCDFVQGYFISKPISAAAFEHQLKSPAP 720



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                      +++ D+      +      +LGL      G   ++  + H +D+     
Sbjct: 41  YQHLAEHVPTGIFEVDLAGHCTFSNATFKQLLGLDDQLSLG--FSYTRHFHPDDKMAVVK 98

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +   +    Y FRV   +    ++ I   P+   +  ++ +IG   D+TE   S 
Sbjct: 99  HWCRCIKKEQA-FNYTFRVHLPEQVELYLTINAVPVF-KDQQLIAFIGCVEDVTELCLSQ 156

Query: 527 EG 528
           + 
Sbjct: 157 QQ 158


>gi|114045641|ref|YP_736191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113887083|gb|ABI41134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1077

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 165/644 (25%), Positives = 300/644 (46%), Gaps = 16/644 (2%)

Query: 323  TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
            T   +Y     +  A+ L     +I  + + +   I   +      P L   +       
Sbjct: 428  TLLGLYLFSALFTAAITLWLGRKIIRSFMVKIT-RIANDMQRMAADPQLNINIDASGSDE 486

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               + Q +       Q       R +     S + +   D         P  + I G + 
Sbjct: 487  LARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQITGYSL 546

Query: 443  GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G   + L    H     +F T +   +  + G+ + E   +  D Q +   + I  
Sbjct: 547  EEVKGRSPSLLSSNRHP---SHFYTAMWEAL-QKEGKWEGEIWNKRKDGQVYPEYLAITV 602

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + N  G+I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F +RL   + L+  D
Sbjct: 603  VRNERGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHD 662

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +++ID+D++K INDV G A GD +L  + +R+  +    D LAR+ G+ F +IL
Sbjct: 663  SR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDFLARIGGDEFVLIL 721

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                N   I   A  + +++A P NL EREI ++AS G   +    +  S + +N E+AM
Sbjct: 722  PRVTNEFAIEHMASRIIETLAAPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAM 781

Query: 682  YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y PI+ +   +I  +E
Sbjct: 782  YQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFTLHYQPIVDMKTGQICSVE 841

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            ALI+W  P  G I   +F+ IAEE  +I+ +  ++L +   D+  W+       + + IN
Sbjct: 842  ALIRWQDPDLGLIPPDQFIGIAEETGLIEPMGEWVLNQAMHDLRQWQHMGLN--LNVAIN 899

Query: 800  IASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            ++S+  ++       + +Q   ++   +P  + +  +ES++MG+       L  +R +G 
Sbjct: 900  VSSRQCINTRGLGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLESIRHLGS 959

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
             + +DDFGT  S LSYL   P   +K + S +           ++++I+ M +++E  ++
Sbjct: 960  QIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALDNSSNANLVKAIVMMGQSLEMELV 1019

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            A+ I  E   K L  +GC Y Q   ++ PL F+ I  LL +  P
Sbjct: 1020 AEGIETEAQWKFLRDLGCHYAQGYLISKPLPFDEITPLLNQTLP 1063


>gi|113968479|ref|YP_732272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113883163|gb|ABI37215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1077

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 165/644 (25%), Positives = 301/644 (46%), Gaps = 16/644 (2%)

Query: 323  TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
            T   +Y     +  A+ L     +I  + + +   I   +      P L   +       
Sbjct: 428  TLLGLYLFSALFTAAITLWLGRKIIRSFMVKIT-RIANDMQRMAADPQLNINIDASGSDE 486

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               + Q +       Q       R +     S + +   D         P  + I G + 
Sbjct: 487  LARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELVNPAFSQITGYSL 546

Query: 443  GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G   + L    H     +F T +   +  + G+ + E   +  D Q +   + I  
Sbjct: 547  EEVKGRSPSLLSSNRHP---SHFYTAMWEAL-QKEGKWEGEIWNKRKDGQVYPEYLAITV 602

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + N  G+I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F +RL   + L+  D
Sbjct: 603  VRNERGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHD 662

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +++ID+D++K INDV G A+GD +L  + +R+  +    D LAR+ G+ F +IL
Sbjct: 663  SR-KLAILLIDLDQFKYINDVQGHAMGDLLLQDVAKRLENIAGKNDFLARIGGDEFVLIL 721

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                N   I   A  + +++A P NL EREI ++AS G   +    +  S + +N E+AM
Sbjct: 722  PRVTNEFAIEHMASRIIETLAAPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAM 781

Query: 682  YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y PI+ +   +I  +E
Sbjct: 782  YQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFTLHYQPIVDMKTGQICSVE 841

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            ALI+W  P  G I   +F+ IAEE  +I+ +  ++L +   D+  W+       + + IN
Sbjct: 842  ALIRWQDPDLGLIPPDQFIGIAEETGLIEPMGEWVLNQAMHDLRQWQHMGLN--LNVAIN 899

Query: 800  IASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            ++S+  ++       + +Q   ++   +P  + +  +ES++MG+       L  +R +G 
Sbjct: 900  VSSRQCINTRGLGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLESIRHLGS 959

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
             + +DDFGT  S LSYL   P   +K + S +           ++++I+ M +++E  ++
Sbjct: 960  QIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALDNSSNANLVKAIVMMGQSLEMELV 1019

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            A+ I  E   K L  +GC Y Q   ++ PL F+ I  LL +  P
Sbjct: 1020 AEGIETEAQWKFLRDLGCHYAQGYLISKPLPFDEITPLLNQTLP 1063


>gi|71907174|ref|YP_284761.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
 gi|71846795|gb|AAZ46291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
          Length = 1006

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 145/572 (25%), Positives = 265/572 (46%), Gaps = 13/572 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                  Q + +  +  + AV  SG+ +   D+    +T  P    + G  S    G   +
Sbjct: 441  QEVTAQQEMLAQMQLLASAVQYSGEAILITDVKNKILTVNPAFTRLTGYTSEEAVGRDPS 500

Query: 452  WLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +L        + +     +       RG  Q E   R  D   +   + I  +   +G I
Sbjct: 501  FLSAGRTMPEEYERMWNGIAE-----RGFWQGEIWDRRKDGGIYPKWMSISVIRGEDGMI 555

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              ++    D++ ++ + E +   A  D LTG+ NR S   RL   L  +  D + R  V+
Sbjct: 556  RYHVAHFTDVSSERAAEERLHHMAHHDVLTGLLNRLSLKGRLDQALAAARRDGS-RVAVL 614

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             +D+D++K IND LG  VGD++L+ +  R+ + ++  D++AR+ G+ F I+L    ++  
Sbjct: 615  FVDLDRFKVINDTLGHHVGDELLIEVANRLRDGVRDSDVVARVGGDEFVIMLSGVEHTSA 674

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            +A  A  +  S+     +   ++  T SIG A + +       ++KNA+ AMYHAK  G 
Sbjct: 675  VAMVAEKLVFSVGQSYQIGGYDLYSTPSIGIAIYPTDGEDGDILMKNADAAMYHAKMAGR 734

Query: 690  NHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            N+ + F      +    +  +  L  A+ N E  L Y P+I L    +  LEALI+W+HP
Sbjct: 735  NNFQFFDAKMNEAALERLNTEHALRRALANQEFCLYYQPVIDLASNRVASLEALIRWNHP 794

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            + G +   +F+ IAEE  +I+ +  ++L    R +  +   A +  I + +NI++  + +
Sbjct: 795  EKGLLLPGKFIGIAEETGLIQPLGEWVLWAACRQLADF-AAAGISGIKMGVNISAIQMRN 853

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L    + +I      P  +    +ESV M  P  +  +L  L  +G+S+ +DDFGT  
Sbjct: 854  GNLPLLARGVIEAYDIDPRNLIFEITESVAMEQPTETVRILDLLNAMGVSVAIDDFGTGY 913

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S LSYL   P + +K + S +    E      I  + I +A ++E  ++A+ +  +  + 
Sbjct: 914  SSLSYLRMFPINHLKLDRSFVEQIGEEIDGCVICDATIGLAHSLELKVVAEGVETQAQLD 973

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             L   GCD +Q    + P+  + +L  +++  
Sbjct: 974  YLRSRGCDMVQGFLFSRPVPADEVLAFIRQYN 1005



 Score = 89.6 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 2/196 (1%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF-S 397
                    +         +   L   +I  AL+G  + + ++     +          S
Sbjct: 263 YRALERYPFYAAAALSEAEVMATLRQRVIFVALLGCSMFVCLIAVVVGLYRSQRREQLVS 322

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           Q +    ER + A   +    W+  +    VT + ++  I            +++L  IH
Sbjct: 323 QQLLLKEERLTAAQRIAQLGSWEIHLPSMHVTCSDELYRIFEFTKRETGYQYQDFLAKIH 382

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR      L   +  R+     + R+   D +  +++         +G  LR IG + 
Sbjct: 383 PEDRSVVDKTLHESIASRQ-PASLKHRLLMPDGRVKYVLESCETEYGRDGTPLRVIGTSQ 441

Query: 518 DITEQKKSLEGILCNA 533
           ++T Q++ L  +   A
Sbjct: 442 EVTAQQEMLAQMQLLA 457


>gi|89092410|ref|ZP_01165364.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Oceanospirillum sp. MED92]
 gi|89083498|gb|EAR62716.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Oceanospirillum sp. MED92]
          Length = 594

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 275/568 (48%), Gaps = 6/568 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q V+      + +     R +LA+ G+ + +WDWD V   +  +  +   +G+   + 
Sbjct: 15  LKQRVIGLSKAEKVLRETEARYALAMQGANEGLWDWDPVSKELYLSARLLRTIGMGKDTF 74

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 WL ++H  DR++++ +L   +       + E+RV+ +   + W++     + N 
Sbjct: 75  KTTSNEWLSWVHEEDREHYQQVLCHHLKGETEYFRCEYRVQNSSGGYVWVLAHGMALRND 134

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                R +G   DITEQK+  + +L  A  D+LTG+PNR   LDRL+  +  S  +    
Sbjct: 135 QNIAYRMVGSIGDITEQKEYQDKLLHQATYDHLTGLPNRALALDRLSVAISRSRRN-KTS 193

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +D+D +KKIND LG  VGD  L  ++ R+G   +  D +ARL G+ F +IL   +
Sbjct: 194 VGLLFVDLDNFKKINDTLGHEVGDLHLKEISNRLGYCFREEDTIARLGGDEFLVILPDLD 253

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++ +    +  +   P+ +   E + +ASIG   +       S +L+NA+ AMY AK
Sbjct: 254 SPKQVEEVCERILATAMQPVTINGYEFSTSASIGVTIYPDDGYEPSGLLRNADAAMYQAK 313

Query: 686 HRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +G +    F     +       ++  L  A+   +L L Y  I+     ++VG EAL++
Sbjct: 314 AQGKDTFCFFTPEMDQETVRKFTMESYLRQALSKDQLSLHYQSIVSASSGDVVGAEALLR 373

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  P++G +   +F+ +AEE  +I  I  ++LE        W       P  I +N++  
Sbjct: 374 WHCPEYGQVPPDQFIPLAEESGLIVTIGDWVLETACLQAAEWMA-TACVPFKIAVNVSYP 432

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D  +   ++ ++ K+      ++L  +E ++M +       L +L  +G+ L++DDF
Sbjct: 433 QFRDGHIVSTVEKVLKKSGLPAQCLELELTERLLMEDERGCAEALKKLSAMGVQLSIDDF 492

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P +T+K + S +     +++  A++ +II MA  +   ++ + +   
Sbjct: 493 GTGFSALNYLQRFPVNTLKIDRSFVAELDCSKESPALISAIIQMAHALGIEVVGEGVETR 552

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +  LT   CDY+Q  H A P+  +  
Sbjct: 553 QQVNFLTLQTCDYLQGYHFARPVPADQF 580


>gi|149180281|ref|ZP_01858786.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Bacillus sp. SG-1]
 gi|148852473|gb|EDL66618.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Bacillus sp. SG-1]
          Length = 988

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 161/565 (28%), Positives = 292/565 (51%), Gaps = 10/565 (1%)

Query: 401 FSDGERQSLAVLGSGD-IVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            ++ ERQ L +  S D  +W  D+ +++ +  +    TI G ++      +  W   I+ 
Sbjct: 275 LAETERQVLKISNSLDVGIWSMDVKKNQYIFVSKGFETICGYSAEDFKQGLLQWEDLIYC 334

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D   F    ++    +  +   ++R+   +    W+   +    N+ GD++R  GI +D
Sbjct: 335 EDLHLFEQRKEALHTGKVPK--QQYRIVHKNGNTKWVQDELITTFNTKGDLVRIEGILSD 392

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITEQK++ E +   A  D LT +PNR+ F   L   ++ S   +     VM ID+D +K+
Sbjct: 393 ITEQKEAEEKVNYIAHHDYLTDLPNRRKFEQELQKFIEQSKMANQ-EFGVMYIDMDGFKR 451

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG A+GD +LV ++ R+ + +   D +AR+ G+ F +++   ++  +    A  + 
Sbjct: 452 VNDTLGHAIGDKLLVEISTRLLDCVPQNDFVARIGGDEFSVLIDKMHSLEQSTTIAKKIV 511

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            ++ +P  +   E+ VTAS+G A++      +  +L+ A+ A+Y AK  G N+ + +   
Sbjct: 512 AALEVPYKIHGYELFVTASVGVAAYPQDGHDAQTILQKADKALYRAKEMGKNNYQIYNSS 571

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++        ++ DL  AV+N ELY  Y P +    E++VG EALI+W+HP+WG +S +E
Sbjct: 572 MNIEAYKLYSLENDLRRAVKNKELYFHYQPKVDAQTEKLVGAEALIRWEHPEWGQVSPAE 631

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  +  + I   I +W D+   P + I IN++ K  + NE  E +  
Sbjct: 632 FIPLAEENDLIFKVTSWTFQTICTQIKNWTDRNL-PLVPISINVSPKIFIKNEWQEELIY 690

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I+ +   P  I+L  +E  ++ N E     + +L+++G+ ++LDDFGT  S L YL   
Sbjct: 691 IINNSNVDPRLIELEITEQALIKNEESFSAGIEKLKQLGVKISLDDFGTGYSSLLYLKKF 750

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             DTVK + S +    + +  I ++II MA   + T+IA+ +        L +  CD IQ
Sbjct: 751 KLDTVKIDKSFVDDILKGKPTITKAIINMAHEFDMTVIAEGVETRAQQSFLQKQDCDQIQ 810

Query: 937 DSHVASPLGFNSILKLLKERFPLVK 961
               + P+    + +L   R P++K
Sbjct: 811 GYLYSKPILPEDLEELF--RNPVLK 833



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 2/143 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            I   VI  + A     +   S   R + A   +    W++DI  D  + +     +LG+
Sbjct: 129 FIISGVITDISALAIQKEHAESLEIRLNTAQQLADIGTWEYDIANDECSLSYKSYEMLGM 188

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    +  L   H  D+D F     S +  +R     + R+  +D     +     
Sbjct: 189 -PYGITPTFQMLLETAHPEDKDIFLNEFVSALNEKRN-FHCQNRIIRSDGAERILAHFGE 246

Query: 501 PMSNSNGDILRYIGIANDITEQK 523
            + + N   ++YIG   DITEQK
Sbjct: 247 VILDDNQKPVKYIGTTYDITEQK 269


>gi|313111782|ref|ZP_07797575.1| hypothetical protein PA39016_004010078 [Pseudomonas aeruginosa 39016]
 gi|310884077|gb|EFQ42671.1| hypothetical protein PA39016_004010078 [Pseudomonas aeruginosa 39016]
          Length = 1245

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             + ++R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEKNRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVVLDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|53804176|ref|YP_113988.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53757937|gb|AAU92228.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 965

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 161/571 (28%), Positives = 271/571 (47%), Gaps = 12/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455
            Q   +       A   + D V   D     +   P   TI G ++G + G     L   
Sbjct: 401 RQKATAQLRLIETAFQHTRDAVLITDARARILRVNPAFETITGYSAGEVVGRTPRMLQSG 460

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D   +R    +      G    E   R  D         +  +   +G    Y+ I
Sbjct: 461 RH--DGAFYRRFWRAL--ETEGHWSGEIWNRHRDGHIFPAWQSVSAVKGPDGSTTHYVSI 516

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E K++   I   ++ D+LTG+PNR  F  RL  +++ +A D   +  ++V+D+D+
Sbjct: 517 FTDISEFKRAEAQIRYLSYHDDLTGLPNRAYFQARLDQLIEAAARDRK-QIALVVLDLDR 575

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG +VGD++L  +  RI +     D +AR  G+ F +IL   +++++ A  A 
Sbjct: 576 FKTINDSLGHSVGDELLCQVAERIQDCTGQGDFVARQGGDEFVVILAD-SDAVRAARVAN 634

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           AM  +IA P     R + VT S+G + +      S  ++K+A+ AMYHAK  G N  + F
Sbjct: 635 AMISAIAKPAVAGGRTLIVTPSLGISLYPHDAGDSESLIKSADAAMYHAKSLGRNTYQFF 694

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   ++R+ ++  L  A+ N E  L Y P I +    ++GLEALI+W HP+ G + 
Sbjct: 695 SAEMSAVATERLALENALHQALSNGEFRLYYQPQIEVCSRRLIGLEALIRWRHPEVGWVP 754

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE  +I  I  ++LE   R    W+       + + +N++   L  ++  E 
Sbjct: 755 PLRFIPLAEETGIIHRIGRWVLEEACRQQREWQAAGLCI-VPVAVNLSPLQLQKDDFPEQ 813

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++AL+S    +P  ++L  +E+ VM +  R   +L +L++ G   ++DDFGT  S L YL
Sbjct: 814 VEALLSGCRLAPGLLELELTETAVMRDVGRMSDMLRKLKERGTRFSIDDFGTGYSSLGYL 873

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K + S +   T  E   AI R+II +AK +   ++A+ +     ++ L R G
Sbjct: 874 NRFPVDKLKIDQSFIRDVTRREDHAAITRAIIALAKQLHLKVVAEGVETAEQLEFLERAG 933

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           CD  Q  + + P+  + I   L     +   
Sbjct: 934 CDGAQGFYFSRPVPADEIAGWLSREGAVQDR 964



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 6/169 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           D +  AL    V I +  G      +L        +         A   +    W+ D+V
Sbjct: 2   DYLILALGVAFVPIALAYGL-----LLKPKRAEAALRRSAFHLREAQQVANLGSWELDLV 56

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           + R+  +  +  I  +           +L  +H +DR+         +   RG  +   R
Sbjct: 57  QGRLEWSDQVFRIFEIDPERFEASYEAFLALVHPDDRERVDAAYRRSIA-DRGSYEIVHR 115

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   D +   +  R +   + +G  LR +G   D+T   ++ E +   A
Sbjct: 116 LLMPDGRVKHVRERCQTFYSEDGRPLRSVGTVWDVTSFHETEEKLHRLA 164



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                   R +  V  +GD V   D+     T       + G A+  + G     LP + 
Sbjct: 154 HETEEKLHRLAAIVESTGDTVIVSDLQGRIRTWNKGAERMWGYAAEEIIGQPVTVLPPLA 213

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                    IL   +      +++E R    D +   + + + P+ ++   +     I  
Sbjct: 214 KQGEPG--QILRRVIDE-HEVVRFESRGLHKDGRDFPISLTVSPLFDAENRLTGVSAIIR 270

Query: 518 DITEQKKSLE 527
           DITE ++   
Sbjct: 271 DITEMERLKA 280



 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 11/155 (7%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +     +I+ +         +    +   +    S   +   D   + +   P  A    
Sbjct: 262 LTGVSAIIRDITEMERLKATLQERLKLVEMVFQYSVSCLVVLDPQFNFIRVNPAYARACR 321

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD----NQFHWM 495
                  G     L   + +D    R I +  V  RR            D       +W 
Sbjct: 322 RDVAEFEGRNHFEL---YPSD---ARFIFEEVVRTRRPFEAVARPFTFPDQPERGVTYW- 374

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              + P+ +  G++   +    D+T+++K+   + 
Sbjct: 375 DWNLVPVLDGKGEVEYLLFSLVDVTDRQKATAQLR 409


>gi|329910718|ref|ZP_08275360.1| Sensory box/GGDEF family protein [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546109|gb|EGF31171.1| Sensory box/GGDEF family protein [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1127

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 143/661 (21%), Positives = 288/661 (43%), Gaps = 16/661 (2%)

Query: 302  YYPMVTASIARITLASIVLYYTYFIIYHG----MKGYERAVLLIPAWILIFIWFIGLWMA 357
            + P  TA    +T     +     +         +GY  A+ +      I    + +  +
Sbjct: 471  WTPAATALRTGLTGVVGDVMAILPLQAWQELACARGYRCAISMPLLDDGIVFGVLTICAS 530

Query: 358  ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
                 D   I    +   +   I  G   +++        + + +  E+ S  +    ++
Sbjct: 531  YAHAFDASQID---MFEELACDIAYGVIHLRNKDGRANAERSLQASEEKLSKIMESIDNV 587

Query: 418  VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
            VW        +  +P +  + G  +       + W   IH +D    R      +    G
Sbjct: 588  VWSHS-GSHLLYLSPIVKQVYGRPAEDFFADAKLWYAVIHPDDAARVRNRRGKLL--LNG 644

Query: 478  RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             +  EFR+   D    W+  R + + +++G ++R+ G+  DIT +K+     +  A  D 
Sbjct: 645  SITQEFRILRPDGSIRWIEDRAKAVRDASGTVIRFDGVEIDITGRKEDEARFVHMANHDA 704

Query: 538  LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            LTG+ NR    DRL   +  +     L   +M +D+D +K++ND  G  +GD +L ++  
Sbjct: 705  LTGLANRNLLSDRLAQSMLQARRAHGL-LALMFMDLDHFKEVNDNGGHLLGDLLLKAVAA 763

Query: 598  RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            R+ + ++  D +AR  G+ F ++L + +   ++      +  +   P  +  + + V+ S
Sbjct: 764  RLRDTIRDNDTVARQGGDEFIVLLTNLHTQAEVVVVVDKILAAFIPPFLVDGQTLMVSVS 823

Query: 658  IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
            +G   +         +L+NA+ AMY AK + G  V+ +             ++  L +A 
Sbjct: 824  VGVTVFPDDSDDMPALLRNADTAMYRAKAQDGTSVQYYSKEMGVLSVERSDLEARLRVAA 883

Query: 716  ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            ++ +  + Y P + +  E I+G+EALI+W       IS + F+ +AEE+ +I  I  ++L
Sbjct: 884  DHRDFTVFYQPKVNIDSECIIGVEALIRWPQADGSMISPALFIPVAEEIGLITQIGEWVL 943

Query: 776  ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                    +W+D    P I + +N++++  +   L E +   +  +      ++L  +ES
Sbjct: 944  RTACAQNKAWQDAGL-PRICVAVNLSARQFMQPGLLESVSRALRDSGLDACHLELELTES 1002

Query: 836  VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            ++M + E     L  L+ +G+ L++DDFGT  S LSYL   P D +K + S +       
Sbjct: 1003 IMMNSAEHFITTLHALKSMGVQLSIDDFGTGYSSLSYLKRFPIDRLKIDQSFIRDIATDP 1062

Query: 894  KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                I R++I +  ++   +IA+ +     +  L    CD IQ  + + P+   ++ +LL
Sbjct: 1063 GDATITRAVIALGHSLNLKVIAEGVETAEQLAFLRANQCDEIQGYYFSRPVAAGALAELL 1122

Query: 954  K 954
            +
Sbjct: 1123 E 1123


>gi|15595772|ref|NP_249266.1| hypothetical protein PA0575 [Pseudomonas aeruginosa PAO1]
 gi|9946445|gb|AAG03964.1|AE004493_9 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 1245

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 78.8 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISSLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|78485494|ref|YP_391419.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
            XCL-2]
 gi|78363780|gb|ABB41745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thiomicrospira crunogena XCL-2]
          Length = 1466

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 150/565 (26%), Positives = 267/565 (47%), Gaps = 12/565 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
             +   +  E  S     S + +   D  +  +      + I G +     G   R     
Sbjct: 906  HKKTEAQIELASKVFEQSREGIMITDSNQKILMVNEAFSEISGYSVEETLGKTPRMLASG 965

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             H   R+ ++ +  S     +G  Q E   R  + +     + I    +++G++  Y+GI
Sbjct: 966  RHS--REFYQNVWKSIKE--KGHWQGEIWNRRKNGEIFPEWLSISRGLDTSGNVTEYVGI 1021

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             NDI++ K+S E I   A  D LTG+ NR+  +DRL   +  +  + N    ++ ID+D 
Sbjct: 1022 FNDISKVKESEEKIKHLAHYDPLTGLVNRELLMDRLNHSISTADRN-NTPLALLFIDLDH 1080

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND LG  VGD +L+ + +RI ++L+  D +AR  G+ F ++L            A 
Sbjct: 1081 FKNVNDTLGHQVGDQLLIEVGQRILKILRDEDTIARQGGDEFIVVLPD-TGENGAVHVAE 1139

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             + +SI+  +NL   ++ +T SIG A +      +  +LKNA+ AMY AK+ G N    F
Sbjct: 1140 KILESISDQLNLKPYKLFITPSIGIAVYPQDGKDADSLLKNADTAMYQAKNDGRNVYRFF 1199

Query: 696  RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +         + I+  L +A+ + +  L Y P        I+G+EALI+W+HP+ G +S
Sbjct: 1200 TMEMQAHSSRIMQIESALRVALFDQQFELYYQPQTCAKSGSIIGVEALIRWNHPEMGPVS 1259

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              EF+ +AE+   I AI  ++L    R I  W +    P I + +N+++      +L + 
Sbjct: 1260 PQEFIPVAEQSGQILAIGWWVLRTAIRQIKIWSEH-GKPCIKVAVNLSAVQFRYEDLPKQ 1318

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  ++ +   SP  ++L  +ESV M NPE    ++ +L   GI +++DDFGT  S LSYL
Sbjct: 1319 VMKILEEEGVSPEFLELELTESVAMANPEAVIEMMDKLVGHGIKMSIDDFGTGYSSLSYL 1378

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                   +K + S +          +I+ +II ++K +    IA+ +  +  +  L    
Sbjct: 1379 KRFKVSKLKIDQSFIRDLAVDSDDRSIIEAIISLSKALGLKTIAEGVETQAQLDFLQEKQ 1438

Query: 932  CDYIQDSHVASPLGFNSILKLLKER 956
            CD IQ  + +  L   +     +++
Sbjct: 1439 CDEIQGFYYSKALTPEAFDAFYEKQ 1463



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 6/159 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTT 431
           + I I        H               +R          +++ +    D        +
Sbjct: 758 MAIDIGFALNDFYHAKERKIIEASRQEALDRLQKIADRLPGVIYQFRLMPDGTSSFPFAS 817

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +  I  +    +          IH  D D+ +  ++    +       E+RVR  ++ 
Sbjct: 818 DALYEIYRVKPEDVTEDSSKVFEVIHPEDVDDVQKSIEESAEHLT-PWYQEYRVRFKNDD 876

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             W+     P    +G IL + G   DI++ KK+   I 
Sbjct: 877 VRWLSGNAMPEKQPDGSIL-WHGFITDISQHKKTEAQIE 914



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 13/167 (7%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG----------DIVWDW 421
           +   +++V      +I          +      ER +                   +   
Sbjct: 307 LVFWIVLVSFSALFLIGIAFLIVLKKERDLQVLERYAEKTEAEKVLQKFYELPFIGMAIL 366

Query: 422 DIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           D   D+ +     +  IL  +S  +     ++   IH  D       L      +     
Sbjct: 367 DAQHDKWIRFNDRLPKILRYSSQDLAQK--SFNEIIHPKDLAEVNAQLTDIESGKSEGFT 424

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            E  + A+D+   +  I ++ +   NG +  Y+    D+TE K   E
Sbjct: 425 TELHLLASDDSIVFGTINVKCVRGENGRVQYYLMTVQDVTELKHLAE 471



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 24/167 (14%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V    + ++       + +  V    D+VW  D     +   P      G    
Sbjct: 457 LMTVQDVTELKHLAELNIEHQNQLNALVHTIPDLVWLKDTEGLYLACNPSFERFFGAKEA 516

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-------RGRLQYEFRVRAADNQFHWMI 496
            + G            D D     L  F              ++ E  +  ++N +  + 
Sbjct: 517 DIIGKT----------DYDFVDKALADFFRENDCNAMAAEESIENEEWLTFSENGYRGLF 566

Query: 497 IRI-RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             I  PM N  G ++  +G+A DI+++K+    +        LT + 
Sbjct: 567 STIKTPMKNEEGQVIGVVGVARDISKRKEDEAQLER------LTKLY 607


>gi|34495997|ref|NP_900212.1| hypothetical protein CV_0542 [Chromobacterium violaceum ATCC 12472]
 gi|34330278|gb|AAQ58219.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 633

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 143/579 (24%), Positives = 265/579 (45%), Gaps = 16/579 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            ++ AT     G      +  LA      S + +   D     +T       I G     
Sbjct: 55  AYLCATARDISGRRQTERQLRLAAQVFESSNEAILISDPDNRILTVNRAFGHITGYGEAE 114

Query: 445 MHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           + G   + L      DR    F   +   +  R G+   E   R    +     + I  +
Sbjct: 115 VRGSKASMLFS----DRHEPAFFQQMWQTLQQR-GQWSGEIWNRRKSGEHFPCWVNISVL 169

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G+I  ++ +  DI+E+K+    +   A  D LT +PNR    DRL   +  +    
Sbjct: 170 QDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAELQH 229

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N +  V+ +D+D +K IND LG   GD++L  + RR+   ++  D + R  G+ F +IL 
Sbjct: 230 N-QLAVLFVDLDHFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLILP 288

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S N   + A  A  + ++I  P  + E  + V  SIG +           +L NA+LAMY
Sbjct: 289 SINQPGEAAQIAERILRTIQQPFQIGEHSLVVGCSIGISLMPDDGSDIQTLLMNADLAMY 348

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  G N    +        ++R++++  L  A+E  +LYLVY P   +  + ++G EA
Sbjct: 349 HAKAHGRNTFRFYTREMNTQVAERLLMENRLRRAMEQEQLYLVYQPQYDMAGQRLLGCEA 408

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W  P  G I    F+ +AE+  +I  +  ++L++  R    W       P+ + +N+
Sbjct: 409 LLRWRDPDEGLIMPGRFIPVAEDTGLIVPLGRWVLDQACRQASLWLRAGL-EPMRVAVNV 467

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++  L+ ++  + ++  + +       ++L  +ES +M + + +   L  ++ +G+ L +
Sbjct: 468 SAHQLMRHDFIDDVREALQRHALPGHCLELEVTESTLMADADLASRQLAVIKAMGVRLAI 527

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL     D VK + S ++     E+  AI+ +I+ +A  +    +A+ +
Sbjct: 528 DDFGTGYSSLAYLKRFAPDLVKIDRSFISDLPGDEENAAIVSAIVHLAGALGMETLAEGV 587

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             E   + L  +GC+ +Q   + SPL    + + L+++ 
Sbjct: 588 ENENQQRFLQTLGCEAMQGYLLGSPLAEEMMTRRLEQQQ 626


>gi|218889316|ref|YP_002438180.1| hypothetical protein PLES_05721 [Pseudomonas aeruginosa LESB58]
 gi|218769539|emb|CAW25299.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 1245

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVNRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|119897569|ref|YP_932782.1| EAL/GGDEF/PAS/PAC-domain-containing signalling protein [Azoarcus
           sp. BH72]
 gi|119669982|emb|CAL93895.1| EAL/GGDEF/PAS/PAC-domain containing signalling protein [Azoarcus
           sp. BH72]
          Length = 880

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 154/609 (25%), Positives = 278/609 (45%), Gaps = 18/609 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF------SDGERQSLAVLGSGDIVW 419
           ++   L G L++ ++ +  T +    A  +  + I       S+    +     + + + 
Sbjct: 272 VVALGLAGYLMIAILRLQRTSLALAGANEHLEERIQTLRLTESELHLYANVFTNASEGMA 331

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D     V   P    I G +   +HG     L      D   +R +  +    +RG+ 
Sbjct: 332 ITDAQARIVAVNPAFTDITGYSIEEIHGRTPAVLAS-GRQDAAFYREMWATL--GKRGQW 388

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q E   R    + +   + I  ++  +G +  YIGI +DIT++K+S   I   A  D LT
Sbjct: 389 QGEIWNRRRSGEIYPEWLSITAITEGDGGVSHYIGIFSDITDRKESEARIRHLAHHDALT 448

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    DRL   +  +  + + +  V+ +D+D++K IND LG  +GD +L  +T+R 
Sbjct: 449 GLPNRLLLQDRLGQAILKARRN-STQAAVLFLDLDRFKTINDTLGHEIGDGLLRQVTQRC 507

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              ++  D +AR  G+ F I+L    +       A  +  ++  P  L   E+TVT SIG
Sbjct: 508 LGAVRETDTVARQGGDEFVIVLPDLEHGQDAGTIARKILAALTEPCRLGPHELTVTGSIG 567

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVEN 717
            A +       S +L+NA+ AMY AK  G N  + +           ++++  L  A++ 
Sbjct: 568 IALYPGDGADPSMLLRNADAAMYRAKADGRNGFQFYAADMNTHSLGELLLEHQLRGALDR 627

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
           +EL L + P +   D  I G EAL++W HP  G ++   F+  AEE  +I  I  ++L  
Sbjct: 628 NELRLYFQPKVNAADGCIEGCEALLRWQHPDLGLLAPGRFVPAAEESGLIVPIGEWVLRE 687

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R + +W D     P+ + +N++ +     ++   ++  +++       ++L  +E+++
Sbjct: 688 ACRQLRAWIDAGLA-PVPVAVNLSGQQFAHQDIVALVREALAEHRLPAPMLELELTETML 746

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KR 895
           M + ER+   L  LR +G++L +DDFGT  S L+YL     + +K + S +         
Sbjct: 747 MRDLERTIATLAELRAMGVTLAIDDFGTGYSSLAYLRQFDVNALKIDRSFVHDIRPGSSD 806

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK- 954
             I  ++I +A N+  T+ A+ +        L R GCD +Q      P    +  + L  
Sbjct: 807 GKIATAVIALAHNLGLTVTAEGVETAAQQHFLARHGCDQLQGFLFGQPEPAEAFAQRLAD 866

Query: 955 --ERFPLVK 961
              R P V+
Sbjct: 867 DDRRAPHVR 875


>gi|291612540|ref|YP_003522697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291582652|gb|ADE10310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 716

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 143/576 (24%), Positives = 269/576 (46%), Gaps = 13/576 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SM 445
           +Q V              ER       + + ++        +   P +A I G  S   +
Sbjct: 142 MQDVTQRKLSEVAARDAEERYRSIFENALEGIYQTTPDGHYLNFNPALARIYGYESAVDL 201

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              I +    ++   + R  F T+++           +E +V     +  W+      + 
Sbjct: 202 VCSISDIQQQLYVDPDKRQEFITLMNVH----GQVSNFEAQVYRKGGEIIWISENAHEVK 257

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G +L Y G   DITE+K   + I   A  D LTG+PNR    DRL   + ++    +
Sbjct: 258 DRDGKLLFYEGTVEDITERKNYEQQIEYQATHDALTGLPNRTLLADRLQQYIGIADRYTS 317

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V  +D+D++K IND +G   GD++L  +  R+   ++  D + RL G+ F ++L  
Sbjct: 318 -KLAVAFVDLDQFKLINDSMGHHAGDELLKIMAARLASCVRESDTVVRLGGDEFVLLLTG 376

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +    I++    +  S+A P  + +R+  V+ SIG + +      ++ +LK A+ AMY 
Sbjct: 377 LHKIEDISESMQRVLSSVAGPCTIEDRDFVVSCSIGISIYPDDARDTTTLLKYADSAMYK 436

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           +K  G N+ + +    +    +R+ ++  L LA+EN E  L Y P + L+   I G EAL
Sbjct: 437 SKQSGRNNFQFYTDELNQRLMERLDLEYRLRLALENEEFLLHYQPKLALVSGAICGAEAL 496

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W       IS + F+ IAEE  +I+ I L++L    R  +          + I +N++
Sbjct: 497 IRWQPAGESMISPASFIPIAEETGLIEDIGLWVLHEACRQAVKLNRLYGRE-LPIAVNVS 555

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +    ++L   +++ +  +  +P+ ++L  +ES ++ +       L  L+ +G+ L +D
Sbjct: 556 PRQFRQSDLVSMVRSALLNSGLNPACLELEITESSLVHDTGSFIKTLQELKNLGVGLAID 615

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S ++YL   P D +K +   ++        IAIL++I+ +  ++   +IA+ + 
Sbjct: 616 DFGTGYSSMAYLKDFPVDRLKIDQVFVSNLEAEPSNIAILKAIVALGHSLNMKVIAEGVE 675

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  L  +GCD +Q  H + PL  ++  KLL +
Sbjct: 676 TAYQKAFLLGIGCDEMQGYHFSKPLHMDTFGKLLSD 711



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 398 QGIFSDGERQSLAVLGSGDIVW---DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           Q    + ER   A+L + D +     +D     V        + G  + +          
Sbjct: 22  QAKLENSERMLKALLNNLDGMVYCCLYDADWTMVFVGDGCKQLTGYDAQAFVSSEICLEA 81

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                DR+     +   +   + R   E+R+  AD +  W+  R  P+ + NG++    G
Sbjct: 82  ITIPEDREPVNKAIGDAISNGK-RFAVEYRIIHADGRTRWVSERGCPLYDDNGEVEAIEG 140

Query: 515 IANDITEQK 523
              D+T++K
Sbjct: 141 FMQDVTQRK 149


>gi|302879727|ref|YP_003848291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302582516|gb|ADL56527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 900

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 143/564 (25%), Positives = 258/564 (45%), Gaps = 14/564 (2%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F    R S     + + +   D     + T      I G  +    G     L     N 
Sbjct: 331 FESELRVSATAFETQEGILITDENNVMLRTNAAFTAITGYTNKEAIGQNPRLLSSGRQN- 389

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             +F + +   +    G  + E   R  + + +   + +  + + NG +  Y+G+ +D+T
Sbjct: 390 -ASFYSAMWKAI-NTTGVWEGEIWNRRKNGEIYPEHLTVTAVKDRNGMVTNYVGVLSDLT 447

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K + E I   AF D LT +PNR+  LDRL   +  +         V+ ID+D +K +N
Sbjct: 448 QRKAAEEKIENLAFFDPLTKLPNRRLLLDRLKQAMASATRSV-TNGAVLFIDLDNFKALN 506

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAI 635
           D  G  +GD +L  + +R+   ++  D ++R  G+ F ++L   +      + +      
Sbjct: 507 DTYGHPMGDLLLQQVAKRLVSSVRDGDTVSRFGGDEFVVLLEGFDENPLDAASQAETVGE 566

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++  P  +   E   T+SIG   +   + +  E++K A++AMY AK  G N +  F
Sbjct: 567 QIFAALRQPYLIGTHEYHGTSSIGATLFNDKQQSIDELMKQADIAMYQAKKEGRNVLRFF 626

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 +      ++ DL  A+EN +  L Y   +        G EALI+W HP+ G +S
Sbjct: 627 DPQMQETIAKRTALEGDLRKAIENHQFQLHYQIQVD-ESRHPFGAEALIRWFHPEHGMVS 685

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AEE  +I  I  ++LE     I  W+  A      + +N+++K     +    
Sbjct: 686 PDQFIPLAEESDLILPIGYWVLETACARIQRWQHDAKTSGFVLSVNVSAKQFRQTDFVNQ 745

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q+LI +   +PS +KL  +ES+++ N E +   +  L+++G+  +LDDFGT  S L YL
Sbjct: 746 VQSLIQQYEINPSLLKLELTESMLLDNIEDTIATMSALKELGVKFSLDDFGTGYSSLQYL 805

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +          AI+R+II MA +++  +IA+ +  E   K L+  G
Sbjct: 806 KRLPLDQLKIDQSFVRDIAVDASDRAIVRTIIAMAHSLDLDVIAEGVETEEQQKHLSSKG 865

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C   Q      P+        L++
Sbjct: 866 CKNFQGYLFGKPVPIEQFETSLRK 889



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 6/196 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG-----LVLIVILIGFTVIQHVLA 392
            L +       +W       +   + +               +V+   L+ F   Q +  
Sbjct: 10  RLALIYAAFGLLWISLSDRFLASVITDSASLTKFQTYKGFCYVVITSALVYFLAKQTMKQ 69

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +    ER   A+ G+GD VWDW+   D    +     I+G            W
Sbjct: 70  NFLTEEKLHDSEERWKFALEGAGDGVWDWNPQTDEAFFSKRWNEIIGYTEHEFPATGSAW 129

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511
           + ++H +D+D   +++  ++   R     E+R+R  D  + W++ R   +  +  G  LR
Sbjct: 130 VAHLHPDDKDRVLSVIQGYLTDSREIYDVEYRIRCKDGSWKWILARGMLVSRDVYGKPLR 189

Query: 512 YIGIANDITEQKKSLE 527
            IG  +DIT++K   E
Sbjct: 190 MIGTHSDITQRKVDEE 205



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 27/335 (8%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGEL--LIWRACSEIALSSSLIIFLF------MY 272
               A   L +IS+   FL+ ++   +       ++    + ++S+L+ FL        +
Sbjct: 12  ALIYAAFGLLWISLSDRFLASVITDSASLTKFQTYKGFCYVVITSALVYFLAKQTMKQNF 71

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSF-----YYPMVTASIARITLASIVLYYTYFII 327
           L   + H       F+       ++  +      ++      I   T        + ++ 
Sbjct: 72  LTEEKLHDSEERWKFALEGAGDGVWDWNPQTDEAFFSKRWNEIIGYTEHEFPATGSAWVA 131

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +      +R + +I  ++        +   I  +  +     A    +   V      +I
Sbjct: 132 HLHPDDKDRVLSVIQGYLTDSREIYDVEYRIRCKDGSWKWILARGMLVSRDVYGKPLRMI 191

Query: 388 ---QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                +       + +  + E+           V   +     V   P +  ILG++   
Sbjct: 192 GTHSDITQRKVDEELVLKNLEKWKKLFDILPIGVSIVNSKNGIVDFNPSLEAILGISKEG 251

Query: 445 -MHGPIRNW----LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            + G   NW        H  D D F ++    +  +R        V+       W  +  
Sbjct: 252 LLQGDYDNWEYLRTDNTH-MDADEFPSL--RAIKEQRVVKDVVIGVKKESGDIIWTSVSA 308

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            P+S  +      + +  DIT++K+    +  +A 
Sbjct: 309 APLSYDSNS---CVTVTTDITKRKQFESELRVSAT 340


>gi|172060668|ref|YP_001808320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
 gi|171993185|gb|ACB64104.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
          Length = 860

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 150/574 (26%), Positives = 266/574 (46%), Gaps = 8/574 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I+++L      + + +       A   +    W++   R     +P++  ILGL +   
Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLMHAQALAHVGNWEFQAGRTEGYWSPELYRILGLDAAHA 180

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L  +  +++        + +         E R+  AD     ++ +     + 
Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTERCVLHQAESGRDP 239

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  I+   GI  DITE+K     I   A  D LTG+PNR    DR+   +  +     L 
Sbjct: 240 DHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL- 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VMV+D+D++K IND  G +VGD +L  +  R+   ++  D +ARL G+ F ++L++  
Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   A  +  +   P  L E ++ VT S+G +   +    +  +LK A+ A+Y AK
Sbjct: 358 TQADADVIARKILDTFIEPFTLDEHDLHVTTSVGVSLCPTDGANAETLLKTADAALYAAK 417

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +             ++  L  AV N EL L Y P + L   +I G+EALI+
Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  P  G I    F+ IAE+  +I  I  ++L       ++WR +   PPI I +N++++
Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACLQAVAWRRE-GHPPIRIAVNLSAR 536

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                ++   ++  + +T  +P  ++L  +ESV+M + +     L  L+ +G+ L+LDDF
Sbjct: 537 QFRQQDVAAMVRTTLEETGLAPDSLELELTESVLMQDCDAIAHTLRELKALGVVLSLDDF 596

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D VK + S +    ++ +  ++ RSII MA+++    +A+ +  E
Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  L R  C  +Q  + + P+  + I  +L  
Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEIADMLSA 690


>gi|114049396|ref|YP_739946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. MR-7]
 gi|113890838|gb|ABI44889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. MR-7]
          Length = 1209

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 168/595 (28%), Positives = 285/595 (47%), Gaps = 16/595 (2%)

Query: 370  ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            A+     L+    G  +I  ++      +   +     +     SG+ +   D     V 
Sbjct: 624  AVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGIAIMDAHDIIVD 683

Query: 430  TTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVR 486
                   I G +   + G     L      DR      R  LD       G  Q E   R
Sbjct: 684  VNSAFTQITGYSRDEIIGKNCRSLEA-ERTDRSIDARVRAALDQ-----TGFWQGEVWDR 737

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              D       + +  + +  G +  YIG   DI+E+K + E I   A  D+LT +PNR S
Sbjct: 738  HKDGYDFPKWLMMSVVRDETGSVSHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLS 797

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               RL T+   +      +  VM ID+D +K IND LG  VGD +L+ + RR+  ++   
Sbjct: 798  LQSRLETVFQEAFVSQ-TQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIVSSD 856

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            DI+ARL G+ F ++L S+ +  ++A  A A+R  +     +  + +  + SIG + + + 
Sbjct: 857  DIVARLGGDEFVVVL-SDTDHDEVAKVAEALRSGLNQTYIIDNKPLHSSPSIGISLFPTD 915

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724
              +   ++KNA++AMY AK  G N+ + F   +++  ++R  I+  L  A+   EL L Y
Sbjct: 916  GDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIARDELRLHY 975

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             P I +   ++VG+EALI+W HP+ G ++   F+ IAEE+ MI  I  ++LE+    +  
Sbjct: 976  QPQIDINTGQMVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLEQALAQLAE 1035

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            WR++     + + +N+++  L  + +   +  +++K       ++L  +ESV M  PE++
Sbjct: 1036 WREK-GAKGLRMAVNLSAHQLRKDTIVADIINVLTKHKLPKGALELEITESVAMQYPEQN 1094

Query: 845  RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +          AI  + 
Sbjct: 1095 AKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAAT 1154

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            I MA  +  T++A+ +  E  +  L+ MGCD +Q  + + PL     L+ ++  F
Sbjct: 1155 ISMAHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLAAEDCLRFIERNF 1209



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 7/153 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLA 441
              + + +  +  F   +    +R       +        +     V        I G  
Sbjct: 515 TMALSKEIARSQTFQATLVESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMDITGYT 574

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500
              +     +      I  R +    L+     RR G  Q  +R    D Q   + +   
Sbjct: 575 LEEL--QALDPWELTPIRYRVSETEQLERLKQTRRYGPYQKHYR--HKDGQMVAVRLNGS 630

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ +NG+ L  + I  DITEQ++++  +   A
Sbjct: 631 LVTAANGEQL-ILFIVEDITEQERTVARVNLLA 662


>gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans]
 gi|133737783|emb|CAL60828.1| conserved hypothetical protein; putative exported protein
           [Herminiimonas arsenicoxydans]
          Length = 944

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 148/648 (22%), Positives = 283/648 (43%), Gaps = 20/648 (3%)

Query: 320 LYYTYFIIYHGMKGYERAVLLI---PAWILIFIWFI--GLWMAITKRLDNDIIQPALVGG 374
           ++      +H       A   +    A                  + + +   +  L   
Sbjct: 294 VFSVAGQTWHMEVSTPPAWFAMERSNALWAFLAGLFFTAAAAIYLQAVLDRSRRIQLQVD 353

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTT 431
                + I    +   +A    ++      ER   A+  S + +                
Sbjct: 354 ERTAQLRIANEDLSADIAARKRAEYALQLRER---AIEASANSIIIISAEAPHYAIEYVN 410

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           P    I G ++    G    +L    + D+     I  +    R G      R    D  
Sbjct: 411 PAFERITGYSAEEAIGVNLCFLWGTDV-DQPGIEEIRATASAEREG--HAVLRNYRKDGT 467

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             W  + I P+ +  G +  +I +  DIT  K+    +     +D LTG+ NR    DRL
Sbjct: 468 LFWSDLYIAPVKDDTGTVSHFIVVQYDITATKRYESELEFQTNRDALTGLANRSLMRDRL 527

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              +  +    +    ++ +D+D++K +ND LG   GD +L +++ R+   ++  D +AR
Sbjct: 528 GQAVSYAHRYGHP-IWILFVDLDRFKFVNDTLGHQAGDILLKAVSARLQAAVRDTDTVAR 586

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G+ F +IL    ++         + +SIA P+ +   E  ++ SIG A + +   T  
Sbjct: 587 MGGDEFVLILPERTDAGLSTGIMQRIMESIAQPLTIEGHEFFISGSIGVAVYPADGETPE 646

Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           E++K+A++AMY AK  G N+ + +   ++    +R+ I+ DL  A+E  E  L Y P + 
Sbjct: 647 ELIKHADIAMYRAKETGRNNFQFYTPAMNERALERLHIEGDLRNALEREEFTLHYQPQVD 706

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L   +IVG+EALI+W HP+ G +    F+ +AEE  +I  I  +++         W++  
Sbjct: 707 LRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLIVPIGAWVIRTACLQNKVWQESG 766

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + +N++++     +L + +   + +   +P  +++  +ES+VM + +R+  +L 
Sbjct: 767 FGH-LRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYLEIELTESLVMADVDRAIGILR 825

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
            L+ +G+ L++DDFGT  S LSYL   P D +K + S +          AI+ S+I +A 
Sbjct: 826 ELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITIDPDDAAIVASVISLAH 885

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++   +IA+ +  E  +  L    CD IQ    + P+   +   +LK+
Sbjct: 886 SLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVTAEAFSVMLKD 933


>gi|296387080|ref|ZP_06876579.1| hypothetical protein PaerPAb_03054 [Pseudomonas aeruginosa PAb1]
          Length = 1245

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--AQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|288940064|ref|YP_003442304.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Allochromatium
            vinosum DSM 180]
 gi|288895436|gb|ADC61272.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Allochromatium vinosum DSM 180]
          Length = 1069

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 264/562 (46%), Gaps = 10/562 (1%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               +   + +     + + V   D+    +        I G +   + G   + L   + 
Sbjct: 507  RADTRLRQAATVFESTREGVIITDLEGRILDVNRAFTEISGYSEPEVLGRNPSLLRS-NR 565

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D   ++ +  S      G  Q E   R    + +  I+ I  +++S G    Y+G+  D
Sbjct: 566  QDHAFYQAMWHSLKT--TGHWQGEIWNRRKSGELYPQILTINTVADSQGRPSHYVGVMTD 623

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I++ K+S   +      D LT +PNR+    RL   L+ +      R  V+ +D+D++K 
Sbjct: 624  ISQLKQSEARLEHLVHYDPLTNLPNRRLVQSRLEHALERADRQGG-RVAVLFVDLDRFKT 682

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND LG   GD +L  L RR+ E ++  D LARL G+ F ++L +       A  A ++ 
Sbjct: 683  VNDSLGHPSGDVLLELLARRLSERVREDDTLARLGGDEFLVLLENLQRPEDAAAVAESLL 742

Query: 639  KSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P +L   +E+ V ASIG + +     T ++++++A++AMY AK  G N    +  
Sbjct: 743  SLLQQPFHLPNGQELYVGASIGISLYPDDGHTVTDLIQHADVAMYQAKEEGRNTYRFYTP 802

Query: 698  S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S      +R+ ++  L  A+ + E  L Y   I + D  ++G EAL++W     G ++  
Sbjct: 803  SLTQTARERLGLEARLHRALASEEFVLHYQAQIDMRDGRLIGCEALVRWHSATEGLVAPD 862

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+ +AEE  +I  +  ++L +   D  SWR +     + + +N++ + L   +L E + 
Sbjct: 863  RFIPLAEETGLIVPLGEWVLRQACADCQSWRARGL-TDLTVAVNLSGRQLRSPDLVERVT 921

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++ +T     R+KL  +ES++M   E++   L  L+ +G+ L++DDFGT  S L+YL  
Sbjct: 922  RVLRETGLPAERLKLELTESMIMDQREQALERLRALKALGVRLSIDDFGTGYSSLAYLKR 981

Query: 876  IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K +   +    E    + I  +II MA+N+   +IA+ +        L R GC 
Sbjct: 982  LPIDELKIDRDFVRDIPEDSSDMEIAATIIAMARNLRLNVIAEGVETPEQCDFLIRQGCT 1041

Query: 934  YIQDSHVASPLGFNSILKLLKE 955
              Q      PL   +  ++++ 
Sbjct: 1042 AGQGYLFGRPLPAEAFAQVMRA 1063



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMH 446
           +         + +  ER +LA+  S  I++   +  D       + +IA +LG +  ++ 
Sbjct: 260 LTQLERERANLRAASERLALALATSPVILYSRRLGPDERPLTWISENIARLLGYSP-TLA 318

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W   +H  DR+     L      R G + + +R+  A  +  W+   +  +    
Sbjct: 319 LQPGWWNSRLHPEDREAALDWLREL--DRGGAMVHAYRLIDAQGRVRWIQDEVTLLETDG 376

Query: 507 GDILRYIGIANDITEQKK-SLEGILCNAFQDNL 538
           G      G  +DIT  K          A  D L
Sbjct: 377 GTTHEATGAWHDITATKTGEQMRETRLAVLDAL 409


>gi|239826223|ref|YP_002948847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239806516|gb|ACS23581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 951

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 146/580 (25%), Positives = 272/580 (46%), Gaps = 18/580 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSG-------DIVWDWDIVRDRVTTTPDIATIL 438
           + Q V+           + ER  + V  S        DIV+  D+  +     P    IL
Sbjct: 375 MFQGVMTLANLMSTSSREMERLRVHVQISQSLFEHNTDIVYSTDLHGNFTNVNPAFEKIL 434

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     +       L Y+H ND           +  +      E  +     +     I+
Sbjct: 435 GYTKEEILHTNA--LKYMHPNDVPRVSRHFYRALRGKIQYYNLE--IPTKSGETLLFQIK 490

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             P+   +G  +   GI  DITEQKK+ E I   A+ D  T +PNR  F++ +   L+ +
Sbjct: 491 NVPII-VDGKKVGIYGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIIDEQLEKA 549

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               N +  V+ ID+D++K +ND +G   GD++L  + +RI  +L     L R  G++F 
Sbjct: 550 KQ-KNRKLAVVFIDLDRFKLVNDSIGHYAGDEILKQVVQRIQHVLPAGAYLGRFHGDKFC 608

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    +S  +   A  + K +  PI    +E  +T SIG + + +  +    +LKNA+
Sbjct: 609 LLLTERTDSEGVFKTAAHISKEVMKPIVYENKEFFITISIGISFYPNDGVDKHSLLKNAD 668

Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+  AK  GGN ++ +  +++     R+ ++  L  A+EN E +L Y PII +    IV
Sbjct: 669 IALNKAKQSGGNRIQFYSAKMNEETLYRLEMERYLRKALENQEFFLCYQPIIDIHKGVIV 728

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HPK G +  +EF+ +AEE  +I  I  ++L    +    W+ Q     +F+
Sbjct: 729 GNEALIRWRHPKLGLVRPNEFISLAEETGLIHEIGRWVLVTACKQTKKWQ-QLWNQQLFV 787

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++        + ++  + ++  SP+ + L  +E+ ++ N   S  ++  L+++G+
Sbjct: 788 SVNVSARQFQHEGFIDDVKQALEQSQLSPNCLHLELTENSMLRNLHYSIQVMKELQQLGV 847

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
            + +DDFG+  +  SYL  +P + +K + S +         IAI+++II M   +    +
Sbjct: 848 GIAIDDFGSGYASFSYLKNLPVNILKIDRSFVEQMHTNSSDIAIVKAIITMGHGLGLKTV 907

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +     ++ L  + C + Q   +  P+    +   + 
Sbjct: 908 AEGVETVEQLELLKMLHCHHAQGYALYRPVTAEELSTYMT 947


>gi|253999561|ref|YP_003051624.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylovorus sp. SIP3-4]
 gi|253986240|gb|ACT51097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylovorus sp. SIP3-4]
          Length = 1126

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 141/582 (24%), Positives = 285/582 (48%), Gaps = 12/582 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +  V+     S+   +D          + + +   D     +        I G     
Sbjct: 543  AELVGVMLDITASKAAEADLRLARQVFDNTAEGIVITDPAFRVLEVNQAYQQITGYDKEE 602

Query: 445  MHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G + + +   +H      +   +   +  R G+   E   R    + +   + I  ++
Sbjct: 603  IIGKLPSVMQAGLHE---AAYYEGIWQTLR-REGQWVGEIWNRRKSGESYPEWLSISQVA 658

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++ G +  Y+ +  DIT++K S E +   A  D LT +PNR    +R+   L  +  +  
Sbjct: 659  DAKGSVQNYVAVFTDITQRKLSEERLQFLANHDALTHLPNRALLQERIDQALFRAQRN-K 717

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                V+ ID+D++K IND LG   GD +L    +R+ E L+  D +AR  G+ F +++  
Sbjct: 718  TAIAVLFIDLDRFKIINDTLGHQTGDMLLQEAAKRLKECLRETDTVARQGGDEFVVLVED 777

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              ++  +   A  +  ++A P  L+ RE+ ++ASIG + +    + ++ +LK+A+ AMY 
Sbjct: 778  CGDTDYLNTIARKIMATLAQPFILVGRELFISASIGISVYPDDGLDTASLLKHADAAMYR 837

Query: 684  AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G N    +    ++   + + ++ +L  AVE +E  L Y P + L  ++I+G EA+
Sbjct: 838  AKESGKNTFRFYAAEANTNSVELLTLENNLRRAVERNEFVLHYQPKVDLRSQKIIGAEAV 897

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W HP+ G +S  +F+ +AEE  +I  I  +++    R  + W+       + + +N++
Sbjct: 898  VRWQHPELGMLSPMQFIPLAEETGLIIDIGAWIMRESCRQAVEWQQLTGQ-NVRVAVNLS 956

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            ++   D  L + +   ++++  +P  ++L  +ES++M N ER+R +L     +G  + +D
Sbjct: 957  ARQFRDETLRQTIADALTESGLTPDCLELEITESMIMHNAERAREVLQHFHDLGAHVLID 1016

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S   YL + P D++K + S +         +AI ++II MA +++  ++A+ + 
Sbjct: 1017 DFGTGYSSFGYLKHFPIDSLKIDRSFVRDIPDDVDDMAITQAIIAMAHSLQIKVVAEGVE 1076

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             +  +  L + GCD IQ    + PL  +  +++LK + P+++
Sbjct: 1077 TQEQLAFLKKQGCDQIQGFLFSEPLHSHDFVRMLKLQ-PMLR 1117



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 3/153 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T+I  + +       +    +     V     IVW           + +   +LG    
Sbjct: 417 VTLIIDISSRKKAEAELVKSQQDYRELVESVQAIVWRAIPGGKFTFVSKEAEALLGYPLA 476

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W+  IH +DRD            +     +++R+ AAD +  WM   ++ + 
Sbjct: 477 QWTTDPGFWVDKIHPDDRDWVVE-YCRTESLKLQSFDFDYRMIAADGRVVWMKDIVKVIP 535

Query: 504 N-SNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           N SN      +G+  DIT  K + E  L  A Q
Sbjct: 536 NMSNTRPAELVGVMLDITASKAA-EADLRLARQ 567



 Score = 81.2 bits (199), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 101/332 (30%), Gaps = 28/332 (8%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           +  R  + +  FA+    L   ++    +  +V   +  L      S +  + S ++F  
Sbjct: 115 IRLRDFLTLVFFAVGISPLV-SALINVLMLVVVGADTTALANSFTNSWLEDAFSYLLFTP 173

Query: 271 MYLHWNRWHA-KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI--VLYYTYFII 327
             L +  +   +  +        +A L   S    M+ A    ++             I+
Sbjct: 174 AVLAFYHYEPIRWSWARVGEALILAGLVVFSCLLTMLGAMDKSMSQLMQPQAFMLFPLIM 233

Query: 328 YHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +  ++     A L +    +  +W     +       +D  Q  L+   + +++L    V
Sbjct: 234 WAALRFHQRGAALSVLFVAMTALWGGAHGL---GTFAHDFAQSNLLDYWMYVLVLSSTGV 290

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGS----------GDIVWDWDIVRDRVTTTPDIAT 436
                A    + G      R    +              + V         V     +  
Sbjct: 291 -----ALSGLNAGRIRSEARLKEQLDTYDALLHAQADVNEGVAIIH-RGKIVYGNDALWR 344

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G + G +     ++   IH +DR     I    +       +YE      + +   + 
Sbjct: 345 IGGYSPGDI-PLGSDFFSLIHPSDRKRVSEIYQQRLQDMDVPTRYEALGLGKNGRAIHIE 403

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           I      + +    R + +  DI+ +KK+   
Sbjct: 404 IAAAQYRDDS---QRIVTLIIDISSRKKAEAE 432


>gi|254243669|ref|ZP_04936991.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197047|gb|EAZ61110.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 1242

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 160/568 (28%), Positives = 277/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 672  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 730

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 731  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 788

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 789  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 847

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 848  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 907

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 908  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 967

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 968  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1027

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1028 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1086

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1087 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1146

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1147 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1206

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1207 EQIQGFVLSPPLPAELFASKFLKPRQPI 1234



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 265 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 324

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 325 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 382

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 383 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 431



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 484 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 543

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 544 ITHLVETQELLRISEEKFANAFHAYPDGLLISHLEDGTLIDVNEGFTRLTGYRRDEVISR 603

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 604 STLELGLWVDTEDRKRLISLVRHHTLTQG----FIAPVRDRNGGIRQCEMSAHRI-SIDG 658

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 659 E-DCVLTIARDITERQLMQEKLQQAAT 684


>gi|152987701|ref|YP_001346112.1| hypothetical protein PSPA7_0717 [Pseudomonas aeruginosa PA7]
 gi|150962859|gb|ABR84884.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 1245

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 162/573 (28%), Positives = 276/573 (48%), Gaps = 10/573 (1%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                  Q +    ++ +     + + V   D  +         + I G +     G    
Sbjct: 670  RDVTERQLMEEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGQSPR 729

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             L     +DR  +  + +     R G  Q E   R    + +   + I  + N  G+I  
Sbjct: 730  LLSS-GQHDRAFYLAMWNQL--EREGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITH 786

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            ++G+  DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ I
Sbjct: 787  FVGVFADISTLKYAQARLDYQAHHDPLTGLPNRLLFEHRLDHALDEA-REESRPGAVLFI 845

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K IND LG   GD +L ++  R+ + L+  D +ARL G+ F I+L   +      
Sbjct: 846  DLDRFKHINDSLGHPTGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAE 905

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +  +   P      E  V+ASIG A +      +  ++KNA+ AMY AK RG + 
Sbjct: 906  HVARKLLNAFTAPFQADGHEFFVSASIGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSR 965

Query: 692  VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            +E +        ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +
Sbjct: 966  IEYYTRELTFLATERMALETELRRALERDELLLYYQPKLSLESGLLVGAEALVRWHHPLF 1025

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G IS   F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +
Sbjct: 1026 GEISPERFIPLAEDCGLILPLGDWVLEHACQQMGDWQK-LHAPFGPLSVNLAGAQLGQPQ 1084

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E ++ L++++   PSR++L  +ES +M   E +  +L  L+ +G+ L +DDFGT  S 
Sbjct: 1085 LIERLRQLLAQSGLEPSRLQLEITESFIMNQTEEALGVLRGLKDLGVQLAIDDFGTGYSS 1144

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LSYL  +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     L
Sbjct: 1145 LSYLKRLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFL 1204

Query: 928  TRMGCDYIQDSHVASPLGFNSIL-KLLKERFPL 959
            T  GC+ IQ   ++ PL       K LK R P+
Sbjct: 1205 THEGCEQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 84.2 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 10/183 (5%)

Query: 349 IWFIGLWMAITKRLDND-IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
           +  +         L    I    L+   V +++ +   + + V       Q +    +  
Sbjct: 255 VGGLLDRRPAWGALARYGIPVALLILVSVAVLLAMNRRLRREVSRRRQLEQDLRDSEQHY 314

Query: 408 SLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              V     I W+  +  +R    +P    +LG            W   +H +D ++   
Sbjct: 315 RGLVESLNAIAWEMRLTENRFTYVSPHAERLLGYPLAEWL-EPGFWQRTLHPDDAEH--- 370

Query: 467 ILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            +D  +   +      +++R+ AAD +  W+   +  +    G  L   G+  DITE K 
Sbjct: 371 AIDYCLSESQAGRDHSFDYRMLAADGRVVWIRDLVTLI--GQGHELLLRGLMIDITETKH 428

Query: 525 SLE 527
           + +
Sbjct: 429 TEQ 431



 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLAS 442
             VI+ +       + +    E+ + A   S D +    +     +      + + G   
Sbjct: 541 VVVIRDITRLLETQELLRISEEKFANAFHASPDGLLISRLEDGTLIDVNEGFSRLTGYRR 600

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +       L   +   DR    +++      +        R    +       +    
Sbjct: 601 DEVTSRSTLELGLWVDPEDRKRLMSLVRHHTLTQGFTAPVLIR----NGSIRQCEMSAHQ 656

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  S G     + IA D+TE++   E +   A 
Sbjct: 657 I--SIGGEDCVLTIARDVTERQLMEEKLQQAAT 687



 Score = 39.9 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 23/167 (13%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILG 439
           L+   ++  +  T +  Q +    ++ +       D+V   +      +         +G
Sbjct: 414 LLLRGLMIDITETKHTEQALRLSEQKFASVFHHCPDMVVLANGADGRFLAVNSTFEQQIG 473

Query: 440 LASGSMHGPIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           +A+    G     L       +          +L+            E  +R  D     
Sbjct: 474 IAATEALGKTATELGIWGAPGLGP-------QVLEKLAQGNLA--NLEVPLRRRDGDTFS 524

Query: 495 MIIRIRPMSNSNGDILRYIGIANDIT------EQKKSLEGILCNAFQ 535
            ++  + ++  +      + +  DIT      E  +  E    NAF 
Sbjct: 525 ALLSAQHVT-LDQRPALVV-VIRDITRLLETQELLRISEEKFANAFH 569


>gi|257093757|ref|YP_003167398.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046281|gb|ACV35469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 1003

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 187/912 (20%), Positives = 365/912 (40%), Gaps = 35/912 (3%)

Query: 63  FTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122
            T ++       +E+   S+          +     +    ++ +          F+ D+
Sbjct: 68  DTVSEPRAGCHALELPDLSLTKPARAFQIKIEREQFAAGSPIVYLQEPIAQFFIVFATDV 127

Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRIT-INPGAVVTFIMEISTPNLPQIYLWEPNFY 181
                 S++        R   S     R+  +   A +T I++      P I L +   +
Sbjct: 128 NGCPWFSISGRGLPFAKRDIVSPFPYARLPALARDATITAIVQDYKAIRPWIMLADETSF 187

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
                   +  G   G+  ++ +    F     S + +        +  ++  +FG  S 
Sbjct: 188 VRDNAVLWVALGAASGILLMMIVVALGFDAYAGSRVALAYAFYCVALQVWLVQNFGIGSA 247

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
            V    G    +     ++++  ++      L + +   +V       +   A+ F  S 
Sbjct: 248 FVPFWPGPE-YFPILQAVSVAGVVLGIGCAVLEFLQLRGRVRAAIGGFVVLSALCFLGSA 306

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
           ++     + A   L+ + +     ++     G     L         +       ++   
Sbjct: 307 WHATGYRAGAA-VLSVLAVATMVLLVRGVFSGDASLRLFTLGLGATMVGGGVQAFSVVG- 364

Query: 362 LDNDIIQPALVGGLVLIVIL--IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
             + +    L      +  L    F +   ++      + +     +Q+  +    D++ 
Sbjct: 365 --SGLEVGRLAAFAFPLGSLCQAAFWLAALIIRLRSEHRELHELEGKQAAIMWAMPDLIL 422

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D     +      AT   +    + G   +    +        R  ++  +    G L
Sbjct: 423 VIDRQGICLDYKQPYATRFFVTGDELLGK--DVSAVLPSATAGTIRQGIERALHQ--GDL 478

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q  F     +   H    RI P         + + +  DIT QK S E I   A+ D LT
Sbjct: 479 QSVFLDLPVEGSMHHYEARIAP-----HGPDKVVVVVRDITLQKHSEEKIRRLAYFDTLT 533

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNRQSFL+RL   L  +   ++ R  ++ +D+D +K+IND LG + GD +L ++  R+
Sbjct: 534 GLPNRQSFLERLDRELLRARRTNH-RMALLFLDLDGFKRINDTLGHSAGDCLLQTVADRL 592

Query: 600 GELLKFPDILAR------------LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            E L+    +AR            L G+ F ++L   +        A  +++ +  P  +
Sbjct: 593 QEKLRAGAFIARPALDESSLHFARLGGDEFTVVLPDVDTVETACLIAQRIQELLGRPTLI 652

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
            E+EI VT+SIG A +      ++ +LK+A+ AMY+AK +G N+ + +  +        +
Sbjct: 653 GEQEIAVTSSIGIALFPDDGADAATLLKHADTAMYYAKEQGRNNWQLYDRTLTTRTTARL 712

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + D+   +E  E  L Y P +   D  IVG+EALI+W HP+ G +S + F+ +AEE  
Sbjct: 713 ALEGDIRKGLERGEFRLFYQPQVSADDGTIVGVEALIRWQHPQQGLVSPARFIPVAEESG 772

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++L    R +  W+      P  + +N++++ L      + + A+I  T  + 
Sbjct: 773 LIVPIGEWVLTAACRQVRQWQQSGVPVP-RVAVNVSARQLGAAGFLDTVAAIIVATGIAA 831

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +ES++M    +    L RLR +G+  ++DDFGT  S LSY+   P  T+K + 
Sbjct: 832 DRLELELTESILMDPEAKRIKGLSRLRAMGVHFSIDDFGTGYSSLSYIKRFPIGTLKIDQ 891

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G         I  +II MA+++   ++A+ +     +  L R  C  +Q    + P
Sbjct: 892 SFVHGLPQDADDAGITTAIISMARSLNLEVVAEGVETREQLAFLQRALCPKLQGYLFSYP 951

Query: 944 LGFNSILKLLKE 955
           L  + +  +L+ 
Sbjct: 952 LPPDEMEAILRR 963


>gi|324324413|gb|ADY19673.1| sensor histidine kinase (sporulation kinase), C-terminal protein
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 926

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 147/571 (25%), Positives = 276/571 (48%), Gaps = 14/571 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446
           + +       Q +  + E   L +  +G+ ++  D+  +     P  A++LG      + 
Sbjct: 366 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 422

Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   +     I    +    +  D        + +  FR    D     +   I  +   
Sbjct: 423 GKPSSMVFNGIEAGKKKQVASGCDRNW-NLYDKTEQFFR---KDQSCFPVEYVISSIK-E 477

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +I+  +    DIT++K+  E I  +A+ D+LT +PNR    DRLT  L  +      +
Sbjct: 478 GNEIVGEVVTFKDITQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 536

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG + GD +L  +  R+   +     ++R  G+ F I L +  
Sbjct: 537 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 596

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++      +  S + P  L++ EI +  SIG + +  +  T+  ++KNA+ AMY +K
Sbjct: 597 SEKEVLKVVNCVIDSFSRPFQLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 656

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G+    F   + +   + + ++ DL  A+E  EL + Y P I     +I G+EALI+
Sbjct: 657 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 716

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+H + G I   +F+ IAEE  +I  I  ++L+   R +  W DQ   P I + +N++++
Sbjct: 717 WNHREHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 775

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               ++L   ++ ++ +   SP  I+L  +E++++ N E +   + +L+ +GI+L +DDF
Sbjct: 776 QFEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 835

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           GT  S L YL  +P  T+K + S +   T+   AI  +II +AKN+   +IA+ +  +  
Sbjct: 836 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 895

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ L+   C  +Q    + P+    I KL K
Sbjct: 896 VEFLSARNCYLMQGYFFSRPMAAEDIEKLFK 926


>gi|46202515|ref|ZP_00053091.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 778

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 150/573 (26%), Positives = 277/573 (48%), Gaps = 11/573 (1%)

Query: 390 VLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            + +   +Q      + + L  A+  +   V   D              + G +   + G
Sbjct: 209 AVFSRDVTQIHQRRLQLRKLETALEQAPVAVMITDAQGAIEYVNRAFVLVSGYSEDEVLG 268

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                L         +    +   +       Q E   RA D    W    I P+ + +G
Sbjct: 269 RNPRLLKSG--ETVASVFRDMWQCLSG-GATWQGELCNRAKDGSLFWEYATISPIRDDDG 325

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               Y+ +  +IT++K++ + ++  A  D LTG+PNR    DR+   ++++  +   R  
Sbjct: 326 VTTHYMAVKENITQRKETEQQLVHQATHDTLTGLPNRLLLEDRVHHAIEVAKREGR-RIG 384

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M +D+D++K +ND LG   GD +L  +  R+   L+  D +ARL G+ F ++L    +S
Sbjct: 385 LMFLDLDRFKIVNDSLGHVAGDQLLKVVADRLRHTLRRSDTVARLGGDEFVVVLTHFQSS 444

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++A+ A  +  ++  P+ L   ++ V ASIG A +       + ++K+A+ AMY AK +
Sbjct: 445 SELAEVAEKISTALDEPVELSGHKVHVGASIGIALFPEDGDDFNSLMKDADTAMYRAKQK 504

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    +   ++    DR+ ++E L  A+   E  L Y P + L       +EALI+W+
Sbjct: 505 GRNTFCFYDSNMNDEALDRLKLEEALRHALVRGEFQLFYQPQVDLQTGVTSSVEALIRWN 564

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P+ G +S + F+ IAEE  +I  I  ++LE   R +  WR+      I + +N++ +  
Sbjct: 565 SPERGQVSPALFIPIAEESNLISMIGWWVLEESCRQLAVWREAGL-TGIKVAVNVSGRQF 623

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           L++ L E +  L+++    PS++++  +ES VM  P+R+   L RLR+IGI +++DDFGT
Sbjct: 624 LNHALVECISDLMTQYGVLPSQLEIELTESTVMAEPDRAIEQLTRLREIGIQVSVDDFGT 683

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P +T+K + S +          AI+ +I+ +A  ++ +I+A+ +  E +
Sbjct: 684 GYSSLSYLKKLPLNTIKVDRSFVRDVNNQSDNAAIVSAILGLADALDMSIVAEGVETEGE 743

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              L   GC  +Q    A P+    +   ++  
Sbjct: 744 EIHLKEAGCIKVQGFRYAKPMPAEQLATWMQRE 776



 Score = 41.5 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 104/363 (28%), Gaps = 64/363 (17%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
                    +    L    +    I  V       Q I          +  S D +   +
Sbjct: 67  GTSFWSVLTIRSASLNGEAVNLAWIYDVSKRKQAEQTILDGKALIRAMLDSSTDGIVLVN 126

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +      ++     S  + G   +   ++     +   + +      RRG  +  
Sbjct: 127 AAGTILALNAAASSFFEKKSDDLPGK--SIWDHLP----EAVTSSM------RRGVERVL 174

Query: 483 FRVRAADNQF----HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            R    +  +        I +  + N++G+  R    + D+T+  +              
Sbjct: 175 ARGETVEGHYAIGARLFDIHMHLVDNASGNHDRVAVFSRDVTQIHQ-------------- 220

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKINDVL----GIAVGDDVLV 593
                R+  L +L T L+ +         VM+ D     + +N       G +  D+VL 
Sbjct: 221 -----RRLQLRKLETALEQA------PVAVMITDAQGAIEYVNRAFVLVSGYSE-DEVLG 268

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              R +       + +A +  + +  +        ++ + A              +  + 
Sbjct: 269 RNPRLLKS----GETVASVFRDMWQCLSGGATWQGELCNRAK-------------DGSLF 311

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
              +          +T+  M     +       +   H  +    +   +R+++++ +  
Sbjct: 312 WEYATISPIRDDDGVTTHYMAVKENITQRKETEQQLVHQATHDTLTGLPNRLLLEDRVHH 371

Query: 714 AVE 716
           A+E
Sbjct: 372 AIE 374


>gi|239827282|ref|YP_002949906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239807575|gb|ACS24640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 568

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 270/549 (49%), Gaps = 12/549 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
               S + +   D     +   P    + G ++  + G   R     +H  D+  ++ + 
Sbjct: 21  IFEYSNESIIITDAQNRILFVNPAFEIVTGYSAEEVIGKNPRILQSGMH--DKQFYKKMW 78

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +    +  G  + E   +  D + +   + I  + +  G++  Y+ + +DITE K+++E 
Sbjct: 79  NDIKQH--GVWKGEIWNKRKDGELYLEWLTISVVKDQKGNMTNYVAMFSDITEHKRNVEQ 136

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR     RL +I+ +S   +     ++ +D+D++K IND LG  VG
Sbjct: 137 LTRLALYDTLTNVPNRYLLEKRLESIIRMSKKHNQ-SFALLFLDLDRFKNINDTLGHRVG 195

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L    +R+  +L+  D +AR  G+ F IIL +  +  + A  A  + +S+  P    
Sbjct: 196 DMLLKETAQRLKRMLRKQDTIARFGGDEFVIILPNLKHIREAAYMAEKIVESLKRPFCFN 255

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
            +EI ++ SIG + +         +++ A+ AMY AK  G N    +   +         
Sbjct: 256 HQEIYISTSIGISVYPYDGTDKETLIRMADRAMYQAKKNGRNQYALYHAGMHGNGKQLFQ 315

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+E  E  L Y P + +  ++I  +EALI+W+HP+ G IS   F+ +AEE  +
Sbjct: 316 LETALRKALERGEFELYYQPQLDIKTKQIRAVEALIRWNHPEKGFISPGMFIPLAEESGL 375

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I+ +++ +    +   + +     + + INI+       +  + +Q  I     +P 
Sbjct: 376 ITPISDWIMMQACEHLKQLQLRFPY--VKMSINISPIYFQQIDFLKKLQKTIESVNVNPR 433

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I+L  +ES VM + E+S   L +L+ +G+S+ +DDFGT  S LSYL   P D +K + S
Sbjct: 434 LIELELTESAVMPHAEQSVERLTKLKTMGMSIAIDDFGTGFSSLSYLHRFPIDILKIDRS 493

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                +  ++  AI+++II MA +++  ++A+ +  +   + L +  CD++Q  +V+ PL
Sbjct: 494 FTKQLSRYQQDSAIVKAIIMMAHSLQIRVVAEGVETKKQYQILEKQSCDFVQGYYVSKPL 553

Query: 945 GFNSILKLL 953
             + + + L
Sbjct: 554 SISELYEFL 562


>gi|209524005|ref|ZP_03272557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Arthrospira maxima CS-328]
 gi|209495677|gb|EDZ95980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Arthrospira maxima CS-328]
          Length = 1092

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 151/561 (26%), Positives = 254/561 (45%), Gaps = 15/561 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP---YIHI 458
               +  S A   S   +   D   D     P    I G  +G + G     L        
Sbjct: 538  DQLKMFSRACDQSPVSIVITDSEGDIQYVNPKFEEITGYKAGEVIGQNPRILKSGYTTEP 597

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 +  +       ++     EF  +  + +  W    I PM +  G I  +I +  D
Sbjct: 598  E----YDVLWRQITSGKQ--WSGEFHNKKKNGELFWEHASICPMRDEEGYITHFIAVKED 651

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT+QK + E +   A  D LT +PNR    DRL   +  +    +    VM ID+D +K 
Sbjct: 652  ITQQKHNEEILAHQANYDALTDLPNRTLIFDRLRQAITEAQVH-HSNVAVMFIDLDHFKN 710

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L     R+   ++  D + RL G+ F +I+   ++ ++    A  + 
Sbjct: 711  INDTLGHELGDFLLKEAGMRLRGCIRKTDTVGRLGGDEFLLIIPKLDDLVQAEYIANQVL 770

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +  P NL   E  ++ASIG AS+       S +++NA+ AMY AK  G N    F  +
Sbjct: 771  DVLGEPFNLCGEEAFISASIGIASYPQDGKNVSTLVRNADTAMYAAKQEGRNVFAFFTQN 830

Query: 699  SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +  I  +  L  A+  +EL +VY P I L   +IVG EAL++W +P+ GNI   +
Sbjct: 831  MNDEAQSRIIIENQLRHAISRNELSVVYQPFIHLNTSQIVGAEALMRWYNPELGNIRPDQ 890

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  +  ++L +  +++ +W  Q N   +++ +N++ + L    L   +  
Sbjct: 891  FIAIAEESRLIVDLGEWILSQACQEVANWHQQGNN-GLWVAVNMSPRQLRTPNLVNVIIE 949

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             I+    S   ++L  +E  ++      + L+ +L  + I L +DDFGT  S LSYL   
Sbjct: 950  AIANNGLSSDCLELEITERSLVEEVPGVQSLIKQLNHLKIRLAIDDFGTGYSSLSYLKRF 1009

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            PF  +K + S ++     +  IA+++++I MA  +   ++A+ I     +  L   GCDY
Sbjct: 1010 PFSVLKIDKSFISDLPDDQDAIALVKTMITMAHGLGLVVVAEGIETTAQLDFLCNQGCDY 1069

Query: 935  IQDSHVASPLGFNSILKLLKE 955
             Q    + PL        L+ 
Sbjct: 1070 GQGYLFSKPLPPAQFRAYLQR 1090



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W  ++    +  +  +  ILGL            L  IH+ D   +     + +  ++
Sbjct: 317 GSWCLNMNTGEMIVSEQLYHILGLTPQPTSINFEQLLNQIHVEDLYGWVQNYATSLFVKQ 376

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                 +R+   D+  HW+     P+S+ +G +   I     I
Sbjct: 377 N-YSLNYRIIQPDSSVHWVSQESTPVSDRHGQVTHIISTIKAI 418



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 44/168 (26%), Gaps = 23/168 (13%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           +  +         +I  +      + V  +      +     R    +  S + +   + 
Sbjct: 398 STPVSDRHGQVTHIISTIKAIENPEIVNPSITAEAALRESEARLRTIISTSTNGLVVVNR 457

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               +   P    + G  +  + G +                                E 
Sbjct: 458 KGRALFINPAAEALFGRPASQLEGELIG---------IPLVTKE------------STEL 496

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
            +   D Q   + +R+  +S        Y+    D+T+ KK+ + +  
Sbjct: 497 EILRQDGQLKIVRMRVVEISWE--QETAYLASLTDVTDFKKTEDQLKM 542



 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 16/123 (13%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            S  ER    +      ++  +     +         L + +  +   +  WL       
Sbjct: 188 ASQMER---ILNAINLPIFILNQEHKIIFANRKAHETL-VVNSQIPPELETWLRERSP-- 241

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                             +  E  +   DN   W  +R+ P+ + +G   R I I  DIT
Sbjct: 242 ---------QIADTNISEIVAEIPI-TKDNITEWFCLRLYPIDSQDGSDFRAIAICEDIT 291

Query: 521 EQK 523
           + K
Sbjct: 292 DSK 294


>gi|296132513|ref|YP_003639760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola sp. JR]
 gi|296031091|gb|ADG81859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermincola potens JR]
          Length = 706

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 145/556 (26%), Positives = 258/556 (46%), Gaps = 11/556 (1%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I ++  +         + V   +   +  +     A   G     +    R     + 
Sbjct: 152 ESIQNEKIKYLTIFESLPNPVIILNSKNEIESYNHAAAETFG---DLLMPSARGRKLLL- 207

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +        +  F      +  +E  + +   + +   I++  M +        I    
Sbjct: 208 -DAFPWLEQEMKDFAAGTANQYFFEKELNSKTAKSY-FEIKLMRMFDIGDKSRYTIIFFY 265

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+K + E I   A+ D LTG+PNR  F DRLT  L  +     +   +M +D+D++K
Sbjct: 266 DITERKMAEEAIKHQAYHDPLTGLPNRILFKDRLTQTLAQAKRSKQM-LALMFLDLDRFK 324

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG A GD  L  +++R+   ++  D +ARL G+ F ++L   N+       A  +
Sbjct: 325 NINDTLGHATGDQFLQGISKRLTGCIRSGDTVARLGGDEFTLLLPQINHVEDAIKVAQKI 384

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFR 696
             +   P  L   E  +T SIG A + +    +  ++K+A+ AMY AK RG N+   S  
Sbjct: 385 IDTFKKPWILGGHEFYITTSIGIALYPNDGEDAETLMKHADTAMYRAKERGNNYQLYSPS 444

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++    +R+ ++  L  A+E  E  + Y P I     EI+G+EAL++W HP+ G I  ++
Sbjct: 445 MNEKAINRLEMEGALRKALEREEFTVYYQPQINTDTGEIIGMEALVRWRHPERGIIPPAD 504

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  ++L    R    W+     PP+ + +N+++      +L + +  
Sbjct: 505 FIALAEETGLILPLGEWVLRTACRQNKEWQMA-GYPPLRVTVNLSASQFQQQDLADRVSR 563

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  ++L  +ES+ M +   +   L +LR +GI + +DDFGT  S LSYL  I
Sbjct: 564 ILKETGLDPQWLELEITESIAMKDVAFTIKTLRQLRDMGIKIAIDDFGTGYSSLSYLKQI 623

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P  T+K + S +       +  +I  +II MA+N++  +IA+ +  E  +  L +  CD 
Sbjct: 624 PSHTLKIDKSFVRDIAKNTEDGSIASAIIAMAQNLKLKVIAEGVETEEQLAFLKKQKCDE 683

Query: 935 IQDSHVASPLGFNSIL 950
           IQ      P+      
Sbjct: 684 IQGFLFGKPVPPQEFE 699


>gi|171317409|ref|ZP_02906602.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5]
 gi|171097426|gb|EDT42267.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria MEX-5]
          Length = 860

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 152/574 (26%), Positives = 267/574 (46%), Gaps = 8/574 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I+++L      + + +     + A   +    W++   R     +P++  ILGL +   
Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLTHAQALAHLGNWEFQAGRTDGYWSPELYRILGLDAAHA 180

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L  +  +++        + +         E R+  AD   H ++ +     + 
Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTEHCVLHQAESGRDP 239

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N  I+   GI  DITE+K     I   A  D LTG+PNR    DR+   +  +      R
Sbjct: 240 NHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLGDRMEQAMSQARRTGQ-R 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VMV+D+D++K IND  G +VGD +L  +  R+   ++  D +ARL G+ F ++L++  
Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   A  +  +   P  L   ++ VT S+G +   +    +  +LK A+ A+Y AK
Sbjct: 358 TQSDADAIARKILDTFVEPFTLDGHDLHVTTSVGVSLCPTDGADAETLLKTADAALYSAK 417

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +             ++  L  AV N EL L Y P + L   +I G+EALI+
Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  P  G I    F+ IAE+  +I  I  ++L       ++WR     PPI I +N++++
Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACMQAVAWRRD-GHPPIRIAVNLSAR 536

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                ++   ++A + +T  +P  ++L  +ESV+M + +     L  L+ +G+ L+LDDF
Sbjct: 537 QFRQQDVAAMVRATLEETGLAPDSLELELTESVLMQDCDAIAHTLRELKALGVVLSLDDF 596

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D VK + S +    ++ +  ++ RSII MA+++    +A+ +  E
Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  L R  C  +Q  + + P+  + I  +L  
Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEISDMLSA 690


>gi|113972148|ref|YP_735941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. MR-4]
 gi|113886832|gb|ABI40884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. MR-4]
          Length = 1209

 Score =  559 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 168/595 (28%), Positives = 284/595 (47%), Gaps = 16/595 (2%)

Query: 370  ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            A+     L+    G  +I  ++      +   +     +     SG+ +   D     V 
Sbjct: 624  AVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGIAIMDAHDIIVD 683

Query: 430  TTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVR 486
                   I G +   + G     L      DR      R  LD       G  Q E   R
Sbjct: 684  VNSAFTQITGYSRDEIIGKNCRSLEA-ERTDRSIDARVRAALDQ-----TGFWQGEVWDR 737

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              D       + +  + +  G +  YIG   DI+E+K + E I   A  D+LT +PNR S
Sbjct: 738  HKDGYDFPKWLMMSVVRDETGSVSHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLS 797

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               RL T+   +      +  VM ID+D +K IND LG  VGD +L+ + RR+  ++   
Sbjct: 798  LQSRLETVFQEAFVSQ-TQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIVSSD 856

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            DI+ARL G+ F ++L S+ +   +A  A A+R  +     +  + +  + SIG + + + 
Sbjct: 857  DIVARLGGDEFVVVL-SDTDHDSVAKVAEALRSGLNQTYIIDNKPLHSSPSIGISLFPTD 915

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724
              +   ++KNA++AMY AK  G N+ + F   +++  ++R  I+  L  A+   EL L Y
Sbjct: 916  GDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIARDELRLHY 975

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             P I +   ++VG+EALI+W HP+ G ++   F+ IAEE+ MI  I  ++LE+    +  
Sbjct: 976  QPQIDINTGQMVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLEQALAQLAE 1035

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            WR++     + + +N+++  L  + +   +  +++K       ++L  +ESV M  PE++
Sbjct: 1036 WREK-GAKGLRMAVNLSAHQLRKDTIVADIINVLTKHKLPKGALELEITESVAMQYPEQN 1094

Query: 845  RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +          AI  + 
Sbjct: 1095 AKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAAT 1154

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            I MA  +  T++A+ +  E  +  L+ MGCD +Q  + + PL     L+ ++  F
Sbjct: 1155 ISMAHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLAAEDCLRFIERNF 1209



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 7/153 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLA 441
              + + +  +  F   +    +R       +        +     V        I G  
Sbjct: 515 TMALSKEIARSQTFQATLVESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMDITGYT 574

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500
              +     +      I  R +    L+     RR G  Q  +R    D Q   + +   
Sbjct: 575 LEEL--QALDPWELTPIRYRLSETEQLERLKQTRRYGPYQKHYR--HKDGQMVAVRLNGS 630

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ +NG+ L  + I  DITEQ++++  +   A
Sbjct: 631 LVTAANGEQL-ILFIVEDITEQERTVARVNLLA 662


>gi|107099561|ref|ZP_01363479.1| hypothetical protein PaerPA_01000574 [Pseudomonas aeruginosa PACS2]
          Length = 1245

 Score =  559 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 159/568 (27%), Positives = 277/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   ++ E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQMIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|222055390|ref|YP_002537752.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221564679|gb|ACM20651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 912

 Score =  559 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 163/669 (24%), Positives = 293/669 (43%), Gaps = 23/669 (3%)

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
               A    +  Y P+ T  I  IT+ ++    T   ++  M+     + LI        
Sbjct: 256 WILAASYPIVEAYAPLKTNRIYFITVMAVGTSVTLLFVWFLMQRLTSPLSLI-------- 307

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                   +    D   +   +       +  +       +L+       +         
Sbjct: 308 -----TRHVEAIPDKSGLHNLINLERKDELGTLINAFNSMILSLDQHQNALRESESNFRA 362

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               + D +                A I+G +   M          IH +          
Sbjct: 363 LADNANDGLQIITDSSHLAYVNKRAAEIVGYSVEEMLLTTIE--TIIHPDHLQMIIERKA 420

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                     Q+E  +   +     + +           +   + I  DIT++KK+ + I
Sbjct: 421 KTDAGEFVPKQFEIMLAHRNGSCVPVEVTTARTIWQGKQVE--LAIVRDITDRKKAEDEI 478

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+PNR    DRL   +  +  D+  +  +M +D+D++K IND LG   GD
Sbjct: 479 QQLAYYDTLTGLPNRSLLQDRLGQGIVQAVRDNR-KVAIMFLDLDRFKSINDTLGHVAGD 537

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L ++  R+ E ++  D +AR+ G+ F II+ +  ++  +   A  +  +I+ P+ L +
Sbjct: 538 SLLATVAERLTECVRETDTVARIGGDEFVIIISAIEHAEDLNKIAEKILAAISKPLVLND 597

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
           +EI +TASIG A +         +LKNA+LAMY AK +G N  + F         + +++
Sbjct: 598 QEIFITASIGIAIYPEDGTDVQGLLKNADLAMYKAKDQGKNAFQYFSREMNVQALEHLIL 657

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+E +E  + Y P + L    +VG+EALI+W HP  G +  S F+ +AEE  +I
Sbjct: 658 ENSLRRALERNEFVIFYQPQMDLKSGRLVGMEALIRWQHPDLGLLPPSRFIPMAEETGLI 717

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  + L+       +W D     P+ + +N+        +  E ++A++ KT  +PS+
Sbjct: 718 LPIGEWALQTACAKNRAWMDA-GFMPLRVAVNLCGIQFRQKKFIELIEAVLKKTGLAPSQ 776

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES++M   E S  +L +L+++G+SL +DDFGT  S LSYL   P + VK + S 
Sbjct: 777 LELELTESMLMSKAEESTTVLHKLKEMGVSLAIDDFGTGYSSLSYLKNFPINRVKIDRSF 836

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    +     AI+ +II MA N+   + A+ +     ++ L+   C+ IQ   ++SPL 
Sbjct: 837 IRDVPNNPDDTAIVSAIIAMAHNLNLKVTAEGVENHSQLEFLSTRNCNEIQGYLLSSPLP 896

Query: 946 FNSILKLLK 954
                + L+
Sbjct: 897 EAEFTRFLR 905


>gi|146291244|ref|YP_001181668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145562934|gb|ABP73869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1077

 Score =  559 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 152/599 (25%), Positives = 291/599 (48%), Gaps = 15/599 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 473  PTLNININISGSDELARMARAMNRMISERQKASHALSRAAAVFNYSAEGIVVTDAENHIE 532

Query: 429  TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H   + +F T +   +  + G+ + E   + 
Sbjct: 533  LINPAFTQITGYTLNEIKGHNPSILSAKRH---QPHFYTAMWQSL-QKEGKWEGEIWNKR 588

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             D + +   + I  + N  G+I+++IG+  DI+++K+  + +   A  D+LTG+PNR+ F
Sbjct: 589  KDGEVYPEYLAITVVKNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDSLTGLPNRKLF 648

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + L+  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 649  NERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLESIGGQND 707

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +AR+ G+ F +IL    N L I   A  + +++A P +L EREI ++AS G   +    
Sbjct: 708  FIARIGGDEFVLILPRLTNELAIEHMATRIIETLATPFSLNEREIQISASFGIGVYPEDG 767

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E+AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 768  LDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFALHYQ 827

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +   ++  +EALI+W  P  G I    F+ IAEE  +I+ +  ++L +   D+  W
Sbjct: 828  PIVDMKTGQVCSVEALIRWQDPDLGLIPPDHFIGIAEETGLIEPMGEWVLNQAMSDLRQW 887

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 888  QKSGLN--INVAINVSGRQCINTRGMSFDQVLQECFNRHHINPRNVHIEITESMLMGDAS 945

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R++G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 946  HCLSTLNAIRQLGSQIYIDDFGTGYSSLSYLKKYPISVIKIDRSFVEHALESTSNANLVK 1005

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +I+ M +++E  ++A+ I        L  +GCD+ Q   ++ PL F+ +  LLK+++ +
Sbjct: 1006 AIVMMGQSLEMKLVAEGIETPAQWNFLKDLGCDFAQGYLISKPLPFDDVTPLLKQKYQI 1064


>gi|148262949|ref|YP_001229655.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter uraniireducens Rf4]
 gi|146396449|gb|ABQ25082.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter uraniireducens Rf4]
          Length = 709

 Score =  559 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 147/583 (25%), Positives = 267/583 (45%), Gaps = 16/583 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            +IG  +           Q  F      S AV  S   +   D         P    + G
Sbjct: 122 AVIGQCMTSIKWERQIREQEKFIRK--LSRAVEQSPVAIIITDTSGTIEYVNPRFTQLTG 179

Query: 440 LASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             S    G   + L        +      I+        G    EF  R  + + +W   
Sbjct: 180 YTSAETIGKKPHILKSGETPPEEYRKLWEIIS-----GGGEWWGEFHNRKKNGELYWASA 234

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I P++N N  I  +I    DITE+K++ E I   A+ D LTG+PNR  F + +   L  
Sbjct: 235 SISPITNGNEQITHFIAFQEDITERKQAEETIKQMAYYDTLTGLPNRHLFNELMHLALAQ 294

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNR 616
           +   + L   V+ +D+D++K IND LG  VGD +L +   R+ E  +   D +AR  G+ 
Sbjct: 295 AHRHNRL-LAVLFLDLDRFKHINDTLGHTVGDQLLQASAHRLKECCRRDRDTVARRGGDE 353

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L   ++  +    A  +  +      L + E+ ++  IG + + +    +  ++KN
Sbjct: 354 FIILLPDIDDVQEAVRVAQKIIDAFTQVFVLPDIELFISTCIGISIFPNDGRDTETLIKN 413

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK +G +    +   +      R+ ++  L  A++  E  L Y P + +   +
Sbjct: 414 ADMAMYRAKEQGRSRYHLYTSSMDEQAFRRLTMENSLRKALQREEFSLYYQPKVNIKTGQ 473

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IV LEAL++W +P+ G I  ++F+ +AE+  +I  +  ++L        +W+   N PP+
Sbjct: 474 IVCLEALVRWQNPEMGLILPNQFIPLAEDTGLIIPLGEWVLRTACAQNKTWQ-LLNYPPM 532

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N + +      L + ++ ++ +   +P  ++L  +E+V++ N E++   L RL  +
Sbjct: 533 RVAVNFSPRQFQQPRLTDMVEQILGEADLAPCWLELELTENVMLQNVEKTVQTLNRLSNL 592

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           GI +++DDFGT  S LSY+  +P  T+K + S +          AI  ++I MA+++   
Sbjct: 593 GIHISIDDFGTGYSSLSYIKKLPIQTLKIDRSFVHDINTNADDAAIAIAVITMAQSLRLN 652

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +IA+ +     +K L  + C  +Q    + PL    +  LL  
Sbjct: 653 VIAEGVETLEQMKLLDGLNCPEMQGYLFSKPLPVAEMTTLLSN 695


>gi|313201594|ref|YP_004040252.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylovorus sp. MP688]
 gi|312440910|gb|ADQ85016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylovorus sp. MP688]
          Length = 1126

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 281/568 (49%), Gaps = 12/568 (2%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIH 457
               +D          + + +   D     +        I G     + G + + +   +H
Sbjct: 557  AAEADLRLARQVFDNTAEGIVITDPAFRVLEVNQAYQQITGYDKEEIIGKLPSVMQAGLH 616

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                  +   +   +  R G+   E   R    + +   + I  ++++ G +  Y+ +  
Sbjct: 617  E---AAYYEGIWQTLR-REGQWVGEIWNRRKSGESYPEWLSISQVADAKGSVQNYVAVFT 672

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DIT++K S E +   A  D LT +PNR    +R+   L  +  +      V+ ID+D++K
Sbjct: 673  DITQRKLSEERLQFLANHDALTHLPNRALLQERIDQALFRAQRN-KTAIAVLFIDLDRFK 731

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             IND LG   GD +L    +R+ E L+  D +AR  G+ F +++    ++  +   A  +
Sbjct: 732  IINDTLGHQTGDMLLQEAAKRLKECLRETDTVARQGGDEFVVLVEDCGDTDYLNTIARKI 791

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
              ++A P  L+ RE+ ++ASIG + +    + ++ +LK+A+ AMY AK  G N    +  
Sbjct: 792  MATLAQPFILVGRELFISASIGISVYPDDGLDTASLLKHADAAMYRAKESGKNTFRFYAA 851

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              ++   + + ++ +L  AVE +E  L Y P + L  ++I+G EA+++W HP+ G +S  
Sbjct: 852  EANTNSVELLTLENNLRRAVERNEFVLHYQPKVDLRSQKIIGAEAVVRWQHPELGMLSPM 911

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            +F+ +AEE  +I  I  ++++   R  + W+       + + +N++++   D  L + + 
Sbjct: 912  QFIPLAEETGLIIDIGAWIMQESCRQAVEWQQLTGQ-NVRVAVNLSARQFRDETLRQTIA 970

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              ++++  +P  ++L  +ES++M N ER+R +L     +G  + +DDFGT  S   YL +
Sbjct: 971  DALAESGLTPDCLELEITESMIMHNAERAREVLQHFHDLGAHVLIDDFGTGYSSFGYLKH 1030

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P D++K + S +         +AI ++II MA +++  ++A+ +  +  +  L + GCD
Sbjct: 1031 FPIDSLKIDRSFVRDIPDDVDDMAITQAIIAMAHSLQIKVVAEGVETQEQLAFLKKQGCD 1090

Query: 934  YIQDSHVASPLGFNSILKLLKERFPLVK 961
             IQ    + PL  +  +++LK + P+++
Sbjct: 1091 QIQGFLFSEPLHTHDFVRMLKLQ-PMLR 1117



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 3/153 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T+I  + +       +    +     V     IVW           + +   +LG    
Sbjct: 417 VTLIIDISSRKKAEAELVKSQQDYRELVESVQAIVWRAIPGGKFTFVSKEAEALLGYPLA 476

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W+  IH +DRD            +     +++R+ AAD +  WM   ++ + 
Sbjct: 477 QWTMEPDFWVDKIHPDDRDWVVE-YCRTESLKLQSFDFDYRMIAADGRVVWMKDIVKVIP 535

Query: 504 N-SNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           N SN      +G+  DIT  K + E  L  A Q
Sbjct: 536 NMSNTRPAELVGVMLDITTSKAA-EADLRLARQ 567



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 100/332 (30%), Gaps = 28/332 (8%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           +  R  + +  FA+    L   ++    +  +V   +  L      S +  + S ++F  
Sbjct: 115 IRLRDFLTLVFFAVGISPLV-SALINVLMLVVVGADTTALANSFTNSWLEDAFSYLLFTP 173

Query: 271 MYLHWNRWHA-KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI--VLYYTYFII 327
             L +  +   +  +        +  L   S    M+ A    ++             I+
Sbjct: 174 AVLAFYHYEPIRWSWARAGEALLLTGLVVFSCLLTMLGAMDKSMSQLMQPQAFMLFPLIM 233

Query: 328 YHGMK-GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +  ++     A L +    +  +W     +       +D  Q  L+   + +++L    V
Sbjct: 234 WAALRFHQRGAALSVLFVAMTALWGGAHGL---GTFAHDFAQSNLLDYWMYVLVLSSTGV 290

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGS----------GDIVWDWDIVRDRVTTTPDIAT 436
                A    + G      R    +              + V         V     +  
Sbjct: 291 -----ALSGLNAGRIRSEARLKEQLDTYDALLHAQADVNEGVAIIH-RGKIVYGNDALWR 344

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G + G +     ++   IH +DR     I    +       +YE      + +   + 
Sbjct: 345 IGGYSPGDI-PLGSDFFSLIHPSDRKRVSEIYQQRLQDMDVPTRYEALGLGKNGRAIHIE 403

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           I      + +    R + +  DI+ +KK+   
Sbjct: 404 IAAAQYRDDS---QRIVTLIIDISSRKKAEAE 432


>gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans]
 gi|133738459|emb|CAL61504.1| Conserved hypothetical protein; putative EAL, GAF, PAS/PAC, GGDEF
           domains [Herminiimonas arsenicoxydans]
          Length = 859

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 159/605 (26%), Positives = 266/605 (43%), Gaps = 14/605 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             + + ++   +              L       H LA     +       + S AV  S
Sbjct: 257 IFSASAQILGALTVYHREPFQPSESDLQLLETATHFLAIAIERKQSEVFMRKLSQAVEQS 316

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFV 472
            + +   D+           +T  G A   + G   N    +H + +        + + +
Sbjct: 317 SNAIIITDLNGTIEYANTTFSTNTGYALHDIIGKKPN----MHKSGKTSRATYADMWAHL 372

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R    Q EF  R  + +    ++R+ P+  ++G I  Y+ I  DIT QK +   I   
Sbjct: 373 -GRGESWQGEFINRRHNGEERIDLVRVSPVREADGRITHYLAIEEDITNQKNAQARIESL 431

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR    +R    L L+  D      VM +D+D +K IND LG  +GD +L
Sbjct: 432 AHFDVLTGLPNRALLDERAQRALRLAEEDQ-ATLAVMFLDLDHFKNINDTLGHNLGDTLL 490

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V L +R+  +L+  D L+RL G+ F ++L    N       A  + ++I  P  +   E+
Sbjct: 491 VELAQRLRAVLRRDDTLSRLGGDEFVLLLPG-ANRESAKKIAQELMRAINEPYRIGSHEL 549

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
            V ASIG A + +  +    + KNA++AMY AK  G N   SF           + +   
Sbjct: 550 NVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQAYSTRYLQVLNA 609

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   +L++ Y P I L+  +++G EAL++W HP+ GNIS +EF+ IAEE  +I  I
Sbjct: 610 LRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAEFIPIAEESGLILQI 669

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L         W        + I +N+++       L   +  ++ +  + P  ++L
Sbjct: 670 GEWVLRVAVAQAKKWHQLGLD-KLIIAVNLSAVQFRHAGLPNLVMQILKEEDFPPQYLEL 728

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E V M +P+ +  ++  L + G+ +++DDFGT  S LSYL       +K + S +  
Sbjct: 729 ELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFKAYKLKIDQSFVRD 788

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            +      AI+ +II MAKN+    IA+ +        L   GC   Q  H + PL    
Sbjct: 789 ISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHYSKPLPAAD 848

Query: 949 ILKLL 953
               +
Sbjct: 849 FETFI 853


>gi|120600723|ref|YP_965297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120560816|gb|ABM26743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1077

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 152/599 (25%), Positives = 291/599 (48%), Gaps = 15/599 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 473  PTLNININISGSDELARMARAMNRMISERQKASHALSRAAAVFNYSAEGIVVTDAENHIE 532

Query: 429  TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H   + +F T +   +  + G+ + E   + 
Sbjct: 533  LINPAFTQITGYTLNEIKGHNPSILSAKRH---QPHFYTAMWQSL-QKEGKWEGEIWNKR 588

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             D + +   + I  + N  G+I+++IG+  DI+++K+  + +   A  D+LTG+PNR+ F
Sbjct: 589  KDGEVYPEYLAITVVKNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDSLTGLPNRKLF 648

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + L+  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 649  NERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLESIGGQND 707

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +AR+ G+ F +IL    N L I   A  + +++A P +L EREI ++AS G   +    
Sbjct: 708  FIARIGGDEFVLILPRLTNELAIEHMATRIIETLATPFSLNEREIQISASFGIGVYPEDG 767

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E+AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 768  LDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFALHYQ 827

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +   ++  +EALI+W  P  G I    F+ IAEE  +I+ +  ++L +   D+  W
Sbjct: 828  PIVDMKTGQVCSVEALIRWQDPDLGLIPPDHFIGIAEETGLIEPMGEWVLNQAMSDLRQW 887

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 888  QKSGLN--INVAINVSGRQCINTRGMSFDQVLQECFNRHHINPRNVHIEITESMLMGDAS 945

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R++G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 946  HCLSTLNAIRQLGSQIYIDDFGTGYSSLSYLKKYPISVIKIDRSFVEHALESTSNANLVK 1005

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +I+ M +++E  ++A+ I        L  +GCD+ Q   ++ PL F+ +  LLK+++ +
Sbjct: 1006 AIVMMGQSLEMKLVAEGIETPAQWNFLKDLGCDFAQGYLISKPLPFDDVTPLLKQKYQI 1064


>gi|83646563|ref|YP_434998.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83634606|gb|ABC30573.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 1092

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 164/626 (26%), Positives = 278/626 (44%), Gaps = 24/626 (3%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI--------QHVLATGYFSQG 399
            I  + +     +R   + ++     G    V L    +         Q   A       
Sbjct: 316 VIGLLNVARTEGERWAEESLRALQSLGHQFSVALGRARLFDSLESLVEQRTSALKAEMAE 375

Query: 400 IFSDGERQSL---AVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                E+  L   AV  S + +   D        V   P    I G     + G  RN+L
Sbjct: 376 KERAQEQLKLRNRAVDASVNAIIIADKSEPDNPIVYANPAFERISGYNLEDVTG--RNFL 433

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +           +   +           +    D    W  +++ P++++ GD+  ++
Sbjct: 434 FLLGNETSQLGVANIKRALKSNTEGYAL-LKNYRKDGTLFWSELKVAPVTDAKGDVTHFV 492

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I ND+TE  +    +      DNLTG+PNR    DR+   +  +A  +     + V D+
Sbjct: 493 AILNDVTESIQYQAQLEYKTKYDNLTGLPNRNLLNDRIQQAIAYAARRNKG-FALAVFDL 551

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IND +G   GD +L  +   +   L+  D LARL G+ F I++  E     +   
Sbjct: 552 DNFKYINDSMGHETGDQLLTEVAESLRSCLREGDTLARLGGDEFVILMHKEECDRPLGLM 611

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +++ ++ P  L ++EI VT SIG   +      +S +LKNA+ AMY AK RG N + 
Sbjct: 612 LNRIQQLVSQPRRLKDKEILVTPSIGVCQFPEDGEDASTLLKNADTAMYKAKERGRNRIC 671

Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           S+          RV +++DL   +EN EL L Y P +       VGLEAL++W       
Sbjct: 672 SYTQEMNESIQKRVQMEQDLRRGIENGELELYYQPQLDPHGGGAVGLEALVRWRKGDR-M 730

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   EF+ IAEE  +I  ++ ++L      +  WRDQ     + + +N++ +   D    
Sbjct: 731 VPPLEFIPIAEETGLITEVDAWVLRAACLQLKMWRDQKQQM-VPVSVNLSPRQFQDAYCV 789

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E ++ ++ ++   P  +K+  +ES+VM N E +   + +L+ +G+ L++DDFGT  S LS
Sbjct: 790 ELVRKVLQESNIEPGCLKIEVTESMVMHNAEEALRTMTQLKAMGVQLSMDDFGTGYSSLS 849

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   PFD +K + S +    +  +  AI+R+II + K +   I+A+ +        L R
Sbjct: 850 YLKMFPFDQLKIDKSFVRNVTNDPQEAAIIRAIIGLGKTLGIKIVAEGVETVEQYSFLVR 909

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GCD IQ    + PL   + +  L+E
Sbjct: 910 AGCDLIQGYFYSPPLPVAACMHFLQE 935


>gi|319428399|gb|ADV56473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1077

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 153/599 (25%), Positives = 291/599 (48%), Gaps = 15/599 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 473  PTLNININISGSDELARMARAMNRMISERQKASHALSRAAAVFNYSAEGIVVTDAENHIE 532

Query: 429  TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H   + +F T +   +  + G+ + E   + 
Sbjct: 533  LINPAFTQITGYTLNEIKGHNPSILSAKRH---QPHFYTAMWQSL-QKEGKWEGEIWNKR 588

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             D + +   + I  + N  G+I+++IG+  DI+++K+  + +   A  D+LTG+PNR+ F
Sbjct: 589  KDGEVYPEYLAITVVKNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDSLTGLPNRKLF 648

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + L+  D   +  +++ID+D++K INDV G A GD +L  + RR+  +    D
Sbjct: 649  NERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLQDVARRLESIGGQND 707

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +AR+ G+ F +IL    N L I   A  + +++A P +L EREI ++AS G   +    
Sbjct: 708  FIARIGGDEFVLILPRLTNELAIEHMATRIIETLATPFSLNEREIQISASFGIGVYPEDG 767

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E+AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 768  LDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQNEFALHYQ 827

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +   ++  +EALI+W  P  G I    F+ IAEE  +I+ +  ++L +   D+  W
Sbjct: 828  PIVDMKTGQVCSVEALIRWQDPDLGLIPPDHFIGIAEETGLIEPMGEWVLNQAMSDLRQW 887

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 888  QKSGLN--INVAINVSGRQCINTRGMSFDQVLQECFNRHHINPRNVHIEITESMLMGDAS 945

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R++G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 946  HCLSTLNAIRQLGSQIYIDDFGTGYSSLSYLKKYPISVIKIDRSFVEHALESTSNANLVK 1005

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +I+ M +++E  ++A+ I        L  +GCD+ Q   ++ PL F+ +  LLK+++ +
Sbjct: 1006 AIVMMGQSLEMKLVAEGIETPAQWNFLKDLGCDFAQGYLISKPLPFDDVTPLLKQKYQI 1064


>gi|170701267|ref|ZP_02892234.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
 gi|170133826|gb|EDT02187.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
          Length = 859

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 150/574 (26%), Positives = 266/574 (46%), Gaps = 8/574 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I+++L      + + +     + A   +    W++   R     +P++  ILGL +   
Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLTHAQALAHVGNWEFHAGRTDGYWSPELYRILGLDAAHA 180

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L  +  +++        + +         E R+  AD     ++ +     + 
Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTERCVLHQAESGRDP 239

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N  I+   GI  DITE+K     I   A  D LTG+PNR    DR+   +  +     L 
Sbjct: 240 NHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL- 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VMV+D+D++K IND  G +VGD +L  +  R+   ++  D +ARL G+ F ++L++  
Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   A  +  +   P  L + ++ VT S+G +   +    +  +LK A+ A+Y AK
Sbjct: 358 TQADADVIARKILDTFIEPFTLDKHDLHVTTSVGVSLCPTDGANAETLLKTADAALYAAK 417

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +             ++  L  AV N EL L Y P + L   +I G+EALI+
Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  P  G I    F+ IAE+  +I  I  ++L       ++WR     PPI I +N++++
Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACMQAVAWRRD-GHPPIRIAVNLSAR 536

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                ++   ++  + +T  +P  ++L  +ESV+M + +     L  L+ +G+ L+LDDF
Sbjct: 537 QFRQQDVAAMVRTTLEETGLAPDSLELELTESVLMQDCDAIAHTLRELKALGVVLSLDDF 596

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D VK + S +    ++ +  ++ RSII MA+++    +A+ +  E
Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  L R  C  +Q  + + P+  + I  +L  
Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEIADMLSA 690


>gi|95930396|ref|ZP_01313133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133648|gb|EAT15310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 904

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 149/628 (23%), Positives = 275/628 (43%), Gaps = 22/628 (3%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI-------VILIGFTVI 387
            + +L +    LI    + +      +   + +                   ++  F ++
Sbjct: 277 RQGILSVFFATLISAGGVIIIFRYLTQRSLNTVLQMTEAAFRNTEPARYKPTLVSEFNIL 336

Query: 388 QHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            H +             ++  L       + + +   ++        P    + G     
Sbjct: 337 GHSI--VDLDHQRKESEKQLLLSSSVFDNAVEGIVITNLDGIIEQVNPACEAMSGYRLKE 394

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G         H N    ++ +  S +    GR + E   R  + + + + + I   +N
Sbjct: 395 LIGENPRIFRSDHHNS-AFYQQMWQSLIEE--GRWEGEVWNRRKNGEVYPLNVSISRCTN 451

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S G    Y+ I +DI+E K+S E +   A+ D LT +PNR+ F DRL+  +  +      
Sbjct: 452 SAGIPSHYVAIFHDISEIKRSEEKLQHQAYHDALTNLPNRKLFHDRLSVAVAHARQH-KT 510

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +DID +K IND LG   GD +L  ++ R+    +  D  ARL G+ F I++   
Sbjct: 511 KLAVIYLDIDNFKYINDSLGHHYGDKLLQQISERLLSCTRQEDTTARLGGDEFIILMPEI 570

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   I      + K + +P  L  R+ TV  S+G   +     T  +++KNA++AMY A
Sbjct: 571 EDPHDITVLCRRILKQLELPHALSGRDYTVNVSMGVTVFPDDADTPEDLIKNADIAMYRA 630

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + F  +  ++      ++  L  A+  +E  L Y P + L  E ++G EALI
Sbjct: 631 KEAGKNGYQLFTAAMQQTIMQRIELEARLSDALCRNEFVLFYQPQVDLESEHVIGAEALI 690

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P    +   EF+ IAEE  +I  I+ ++L+   R    WR+Q+      + +N++S
Sbjct: 691 RWQKPDGQLVYPDEFIPIAEECGLITQIDHWVLKAACRQANKWREQSGR-NFKMSVNLSS 749

Query: 803 KDLL-DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +    D EL + ++ +++KT      + L  +E+ VM + E +  ++ +L  +G+S+ +D
Sbjct: 750 EQFAKDQELVQRVKNVLNKTGLPAECLTLEVTENAVMSDTESAIAIMTQLTALGVSIAID 809

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSY+   P   +K + S +         +AI  SII + +N+   +IA+ + 
Sbjct: 810 DFGTGYSSLSYVKNFPARYLKIDRSFVKDIPGDSDDMAIAASIISLGRNLNMEVIAEGVE 869

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  I  L +  C  +Q      P    
Sbjct: 870 EQTQIDFLKQHRCQQVQGYFYGKPCAAE 897


>gi|254237209|ref|ZP_04930532.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169140|gb|EAZ54651.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 1245

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 161/568 (28%), Positives = 276/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  ++N    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REENRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++LE   + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLEHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+  +   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLELSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--TQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|115351650|ref|YP_773489.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
 gi|115281638|gb|ABI87155.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
          Length = 860

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 151/574 (26%), Positives = 266/574 (46%), Gaps = 8/574 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I+++L      + + +     + A   +    W++   R     +P++  ILGL +   
Sbjct: 121 RIRYLLRAAAAVEKLATTEVSLTHAQALAHVGNWEFQAGRTDGYWSPELYRILGLDAAHA 180

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L  +  +++        + +         E R+  AD     ++ +     + 
Sbjct: 181 PPTFERLLQAVPADEQPLLVQSF-TSLRTEGVPFSLEHRLVHADGTERCVLHQAESGRDP 239

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N  I+   GI  DITE+K     I   A  D LTG+PNR    DR+   +  +     L 
Sbjct: 240 NHAII-LRGIVQDITERKMQQGRIEYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL- 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VMV+D+D++K IND  G +VGD +L  +  R+   ++  D +ARL G+ F ++L++  
Sbjct: 298 VAVMVLDLDRFKHINDSFGHSVGDGLLRVVAARLKRSVRDGDTVARLGGDEFVVMLVNLA 357

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   A  +  +   P  L E ++ VT S+G +   +    +  +LK A+ A+Y AK
Sbjct: 358 TQADADVIARKILDTFIEPFTLDEHDLHVTTSVGVSLCPTDGTNAETLLKTADAALYAAK 417

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +             ++  L  AV N EL L Y P + L   +I G+EALI+
Sbjct: 418 EHGRNCYRFYTRELGARVEEQTILENALHQAVANHELELYYQPKVDLKTGQISGVEALIR 477

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  P  G I    F+ IAE+  +I  I  ++L       ++WR +   PPI I +N++++
Sbjct: 478 WRRPGIGVIPPDRFIPIAEDCGLILPIGEWVLRTACMQAVAWRRE-GHPPIRIAVNLSAR 536

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                ++   ++  + +T  +P  ++L  +ESV+M +       L  L+ +G+ L+LDDF
Sbjct: 537 QFRQQDVAAMVRTTLEETGLAPDSLELELTESVLMQDCNAIAHTLRELKALGVVLSLDDF 596

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D VK + S +    ++ +  ++ RSII MA+++    +A+ +  E
Sbjct: 597 GTGYSSLSYLKDLPIDVVKIDRSFLDDVTTSAEGASLTRSIIAMAESLHMETVAEGVETE 656

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  L R  C  +Q  + + P+  + I  +L  
Sbjct: 657 AQLSFLNRHRCHAMQGYYFSHPVTGDEIADMLSA 690


>gi|119493631|ref|ZP_01624280.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106]
 gi|119452551|gb|EAW33735.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106]
          Length = 776

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 160/598 (26%), Positives = 274/598 (45%), Gaps = 18/598 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW--DWDIVRDRV----TTTPDIA 435
           I   + Q +       + +     +         ++ W   +D    +       +P  A
Sbjct: 158 INHALQQEIAERQRIEESLRESESKFRQLSEHIQEVFWLMGYDATSKQFTAIEYVSPAFA 217

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           TI G    S++     WL  IH +D +              G    E+RV   D    W+
Sbjct: 218 TIWGKTCESLYENPWEWLSSIHSDDHERVEKAFTE--KAILGSFDEEYRVVHPDGTVRWI 275

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             R  P+++  G++ R  GIA DIT  K++   ++     D+LTG+ NR  F+ RL   +
Sbjct: 276 RDRGFPVTDDKGEVYRVAGIAEDITNLKRAEAHLVRETLHDSLTGLANRTYFMQRLEMAI 335

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                 +N R  V+ ID+D +K+IND LG  +GD +L+ ++R +   ++  D +ARL G+
Sbjct: 336 KKRNRHNNYRFAVLFIDLDDFKRINDTLGHLIGDQLLMQISRILTGSVRDIDSVARLGGD 395

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I++    +   + +    +++ +   + L   EI  + SIG    T +    +E+++
Sbjct: 396 EFTILVEDVQDWQDVLNITQRIQEQLTSAVQLEHHEIFTSTSIGIVFSTPNYQNGTEVVR 455

Query: 676 NAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A++AMY AK  G    E F  S        V ++  L  A+ N EL+L Y PI+ L D 
Sbjct: 456 DADIAMYRAKADGKGCYEVFDRSMYDQVLHLVELENALRQAIANQELHLYYQPIVSLRDN 515

Query: 734 E-----IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 I G E L +W HPK G IS+SEF+ IAE+   I  I  ++L++        R  
Sbjct: 516 SQDHLIIEGFEVLSRWHHPKKGLISASEFISIAEDTGQINEIGEWVLQQACIQFQQLRSH 575

Query: 789 ANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 ++  INI+ + L ++ L   +   +  T   P  +KL  +ES ++ N   +  +
Sbjct: 576 YPDVTNLYFSINISGRQLRESSLLNLLDHTLQTTQIPPHCLKLELTESSLIENTTIAAKI 635

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPM 905
           L  +++ GI ++LDDFGT  S L YL   P + +K + S +       +   I+ SI+ +
Sbjct: 636 LKEIQQRGIEISLDDFGTGFSSLRYLHQFPLNVIKIDRSFVETLDLGTRERCIIHSIVTL 695

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           A+ +    +A+ I     +++L  + CD  Q    + P+    I   L +R  LVK  
Sbjct: 696 ARALGFATVAEGIETRQQLEKLRSLECDSGQGYFFSKPIPGEQIADFLLKRGVLVKPA 753


>gi|313682174|ref|YP_004059912.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
            [Sulfuricurvum kujiense DSM 16994]
 gi|313155034|gb|ADR33712.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sulfuricurvum kujiense DSM 16994]
          Length = 1056

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 155/565 (27%), Positives = 272/565 (48%), Gaps = 12/565 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
             +  + S A+  S + V   D   +            G     + G              
Sbjct: 498  RELRKLSQAIEQSPNSVIITDSEANIEYVNAAFTAATGYTLDDVIGKNPRLFQS-GKTSP 556

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              +  + D     +      EF  R  D       ++I P+  ++G +  Y+ I +DITE
Sbjct: 557  SAYIALWDQLREGK--SWHGEFINRGKDGNEFIEEVKIAPIYQTDGSLSHYMAIKDDITE 614

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K++ E +   A  D LTG+PNR   ++R+T  ++++   D     VM +D+D +K IND
Sbjct: 615  KKRTEERVHYLANYDLLTGLPNRVQLIERITYFINVAKRHDG-EFAVMFLDLDHFKDIND 673

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +LG ++GD +L+ L +RI   ++  D ++RL G+ F  IL S  +   +A+    + ++I
Sbjct: 674  MLGHSIGDILLIELAKRIQSTIREEDTVSRLGGDEFIFILPS-TSVHGVANVVEKLLETI 732

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              P ++ + E+ VTASIG A +         +LKNA+ AMY AK  G N+   F  +   
Sbjct: 733  TKPFSIEQNELIVTASIGIAIYPIDGTDPETLLKNADTAMYQAKQNGRNNYRFFTKAMQE 792

Query: 702  S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +    + +   L  A+E  EL++VY P + + D  I+G EAL++W+HP+ G IS +EF+ 
Sbjct: 793  TLARNIQLTNALRHALEKDELHVVYQPQVDISDAHIIGAEALLRWNHPELGAISPAEFIP 852

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            +AEE  +I  I  ++L         W D    PPI + +N+++       L E +  ++ 
Sbjct: 853  LAEESGLILPIGEWVLRTAVTQAKMWIDS-GFPPIIVAVNLSAVQFRHPHLPELVTTILE 911

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +    P  ++L  +E+V M +P+ +  ++  L   GI +++DDFGT  S LSYL      
Sbjct: 912  EVGLPPEYLELELTEAVAMHDPKSAYAIMDNLHDRGIRMSIDDFGTGYSSLSYLKKFKVY 971

Query: 880  TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             +K + S +       +  AI+ ++I MA ++    IA+ +     +K L   GCD +Q 
Sbjct: 972  KLKIDQSFIRDISTDPEDKAIVNAVISMAHSLGLKAIAEGVETVEQLKYLREQGCDEVQG 1031

Query: 938  SHVASPLGFNSILKLLKERFPLVKN 962
             + + PL   S  + +  +  + K 
Sbjct: 1032 YYFSKPLSPESFTEFITAQ--VTKR 1054



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 76/299 (25%), Gaps = 14/299 (4%)

Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLF----MYLHWNRWHAKVGYITFSGIACIA 294
            S L           R      L    I F+     ++++     + + +   + I    
Sbjct: 216 YSMLWGATWWYWHFIRLSGFFFLLLYFIRFIEEKNQLFINREIQSSIIEFSADAIITKSM 275

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +++     +                 +     M   E    +     +     + +
Sbjct: 276 DGLILTWNAAAESLFGYTADEVIGKSVSILYSPSAAMMERENIRQIRDGASVKQFETVFI 335

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                       + P       +I +      I     T      +F    R    +   
Sbjct: 336 AKNGAYVDVAVTLSPIKDSSNTIIGLSKIVRDITERKKTAEAFNRLFL---RNEAILDSV 392

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            DI+   D  +  +          G     + G   ++          +     +     
Sbjct: 393 PDIIMQVDNDKKYIWANKSGIAFFG---DDVIGKEASYYF----EGEQDTYETTNPLFEG 445

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +  +  E   R  D +   +    R +++ NG  +  +  A DITE K+S   +   +
Sbjct: 446 DQNIIYVESFQRRCDGEIRLLAWWCRALNDENGHPIGALSTAQDITEHKQSERELRKLS 504


>gi|116749639|ref|YP_846326.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698703|gb|ABK17891.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobacter fumaroxidans MPOB]
          Length = 844

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 148/551 (26%), Positives = 257/551 (46%), Gaps = 11/551 (1%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
           +    GS + +   D   + +        + G A   + G   R      H    + F  
Sbjct: 286 ATVFEGSTEAIIITDARANILRVNSAFTAMTGYADHEVVGKNPRLLKSGNH---HEEFYR 342

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +    G+ Q E   R  +       + +  + NS   I  Y+GI+ DIT +K++ 
Sbjct: 343 AMWATLS-STGQWQGEIWNRRKNGDIFPAWLTLCAVRNSEDKITNYVGISRDITLRKEAE 401

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LTG+PNR  F DRLT  L  +  D +    ++ +D+D++K IND LG  
Sbjct: 402 ERLSYQASHDALTGLPNRARFHDRLTHALARAGRDRH-EFAILFLDLDRFKVINDTLGHT 460

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L  +T+R+    +  D LAR  G+ F I+L S   +   A  A  +   +A P +
Sbjct: 461 VGDFLLQGVTKRLLGGTRESDTLARWGGDEFIILLESIRGAEDAAVAARRILDVLAEPFS 520

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704
           +   E+ V+ SIG + +         +L+ A++AMY AK  G N  + +  +      +R
Sbjct: 521 VQGHEVFVSGSIGISVYPRDGEDVQALLRCADIAMYRAKDSGKNDYQFYESTMSTGGLER 580

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++ DL  A++ +E  L Y P + +    IVG EALI+WD P  G +   +F+ +AEE 
Sbjct: 581 LKLEGDLRYALKRNEFVLHYQPRVNINTGLIVGAEALIRWDLPDRGLLWPLDFIPLAEES 640

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  I  ++L         W+D     P  + +N+++     + L   +  ++ +T  S
Sbjct: 641 GFIIPIGEWVLRTACLQCRKWQDAGVPHP-RVSVNLSTHQFKKDNLTSTVDRILKETGLS 699

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  ++L  +ES +M N E++   L  L ++G+++ +DDFGT  S L YL   P   +K +
Sbjct: 700 PGLLELEITESAMMENLEKAVATLQGLAELGVNVAIDDFGTGYSSLGYLKRFPIGALKID 759

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +          AI  SII + K +   ++A+ +  +  +  L    CD  Q    + 
Sbjct: 760 QSFVRHIPSNIDDTAIAMSIISLGKTLNLKVVAEGVETQEQLTVLRNYQCDEAQGYLFSQ 819

Query: 943 PLGFNSILKLL 953
           P+  + + + L
Sbjct: 820 PVDADRMTEFL 830



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 4/164 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFS--QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
              V + + I   +  +          + +    E+  +    +   +   +     +  
Sbjct: 126 INEVELFMRIHSALALYRERVIRHHKTRELRESEEKFRVTFDQAPVGIAHVNADGRLLLI 185

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
              +  +LG     +     ++       +RD     L   V        +E  +   D 
Sbjct: 186 NRRLCEMLGFQERELIES--SFPDLCVPENRDVHERELKKSVEQGLEYHGFEIPLVHKDG 243

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  W  + + PM ++ G    +I I  DITE+K   + +  +A 
Sbjct: 244 RIIWTKLTLSPMKDAAGVPKYFIHIVEDITERKNFEDNLRLSAT 287


>gi|330505712|ref|YP_004382581.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919998|gb|AEB60829.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 746

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 159/614 (25%), Positives = 286/614 (46%), Gaps = 12/614 (1%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFSDGE 405
             W++G +     RL  +++  ++       +I   F  I   L +   +Q   +     
Sbjct: 117 LKWYLGAYRLYLDRLLGELLGSSVASDCFSSLIKKVFFDIGLALDSYGAAQRKALQDSEA 176

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R + A+ G+ D +W+W + +D++  +     +L L   S+    ++W   +H +D    R
Sbjct: 177 RYARAMRGANDGLWEWQLEQDQLYLSERWIRMLDLDRDSLSPTSQSWFSRVHSDDLPGLR 236

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D+ +      L +E+R+R  D  + W+++R    + S+G + R  G  +DI++++ +
Sbjct: 237 QAIDNHLRGLSPFLHHEYRIRRRDGSYLWVLVRGVADTCSSG-LRRMAGSQSDISQRRAA 295

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D LTG+ NR    + L   +            ++ ID+D++K IND LG 
Sbjct: 296 EEQLHHAARHDPLTGLANRARLSELLQQAVQRRQRPGAREAALLFIDLDRFKLINDSLGH 355

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VLV +  R+   L+  D LAR  G+ F  +L            A  M  S+ +P+
Sbjct: 356 QTGDRVLVEVAERLSHCLRPGDHLARFGGDEFVALLDDLACMGDAERVAQRMLDSLHVPL 415

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L E+ + V+ASIG A    S     + L+ A+LA+Y AK  G      +     +  + 
Sbjct: 416 RLPEQTLAVSASIGIAGLQESGQ-PLDPLQAADLALYRAKSAGKAQFARYSNELQQQAQR 474

Query: 706 MIK--EDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            ++    L  A    EL LVY PI         ++G+EAL++W H +   IS  EF+   
Sbjct: 475 QLELQNALAQAGARGELRLVYQPICQLDGNQPRLIGVEALLRWQH-QGREISPLEFIPCL 533

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I A+  ++L++    + +W+  A  P +   +N++S+ L  ++    +  ++  +
Sbjct: 534 EESGEILAVGDWVLQQACSQVRAWQ-LAGQPHLRCSVNLSSRQLQQSDFAARVADILRHS 592

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS + L  +ES +M +  ++   L  L  +GI L LDDFGT  S L YL   P   +
Sbjct: 593 GLPPSSLVLEITESQLMEDSAQNLACLRELASLGIQLALDDFGTGYSSLGYLKRFPLHII 652

Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G+ +     AI R+II +  ++   ++A+ +  +  +  L   GC Y Q   
Sbjct: 653 KVDKSFIAGAPQDSESLAITRAIIGLGHSLGLAVVAEGVEKQAQLDFLYSEGCHYAQGYW 712

Query: 940 VASPLGFNSILKLL 953
            + P     + +LL
Sbjct: 713 FSQPRAPRELQRLL 726


>gi|222094092|ref|YP_002528149.1| sensor histidine kinase (sporulation kinase), c-terminal region
           [Bacillus cereus Q1]
 gi|221238147|gb|ACM10857.1| sensor histidine kinase (sporulation kinase), C-terminal region
           [Bacillus cereus Q1]
          Length = 925

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 146/569 (25%), Positives = 276/569 (48%), Gaps = 14/569 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446
           + +       Q +  + E   L +  +G+ ++  D+  +     P  A++LG      + 
Sbjct: 366 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 422

Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   +     I    +    +  D        + +  FR    D     +   I  +   
Sbjct: 423 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 477

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +I+  +    D+T++K+  E I  +A+ D+LT +PNR    DRLT  L  +      +
Sbjct: 478 GTEIVGEVITFKDVTQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 536

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG + GD +L  +  R+   +     ++R  G+ F I L +  
Sbjct: 537 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 596

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++      +  S + P +L++ EI +  SIG + +  +  T+  ++KNA+ AMY +K
Sbjct: 597 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 656

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G+    F   + +   + V ++ DL  A+E  EL + Y P I     +I G+EALI+
Sbjct: 657 EISGSSYHFFSEGMDTRTFESVKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 716

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+H + G I   +F+ IAEE  +I  I  ++L+   R +  W DQ   P I + +N++++
Sbjct: 717 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 775

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               ++L   ++ ++ +   SP  I+L  +E++++ N E +   + +L+ +GI+L +DDF
Sbjct: 776 QFEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 835

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           GT  S L YL  +P  T+K + S +   T+   AI  +II +AKN+   +IA+ +  +  
Sbjct: 836 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 895

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++ L+   C  +Q    + P+    I KL
Sbjct: 896 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 924


>gi|229142706|ref|ZP_04271180.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|228640769|gb|EEK97126.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 936

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 146/569 (25%), Positives = 277/569 (48%), Gaps = 14/569 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446
           + +       Q +  + E   L +  +G+ ++  D+  +     P  A++LG      + 
Sbjct: 377 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 433

Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   +     I    +    +  D        + +  FR    D     +   I  +   
Sbjct: 434 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 488

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +I+  +    D+T++K+  E I  +A+ D+LT +PNR    DRLT  L  +      +
Sbjct: 489 GTEIVGEVITFKDVTQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 547

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG + GD +L  +  R+   +     ++R  G+ F I L +  
Sbjct: 548 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 607

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++      +  S + P +L++ EI +  SIG + +  +  T+  ++KNA+ AMY +K
Sbjct: 608 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 667

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G+    F   + +   + + ++ DL  A+E  EL + Y P I     +I G+EALI+
Sbjct: 668 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 727

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+H + G I   +F+ IAEE  +I  I  ++L+   R +  W DQ   P I + +N++++
Sbjct: 728 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 786

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  ++L   ++ ++ +   SP  I+L  +E++++ N E +   + +L+ +GI+L +DDF
Sbjct: 787 QLEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 846

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           GT  S L YL  +P  T+K + S +   T+   AI  +II +AKN+   +IA+ +  +  
Sbjct: 847 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 906

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++ L+   C  +Q    + P+    I KL
Sbjct: 907 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 935


>gi|217957893|ref|YP_002336437.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           cereus AH187]
 gi|217066990|gb|ACJ81240.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           cereus AH187]
          Length = 925

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 146/569 (25%), Positives = 277/569 (48%), Gaps = 14/569 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446
           + +       Q +  + E   L +  +G+ ++  D+  +     P  A++LG      + 
Sbjct: 366 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 422

Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   +     I    +    +  D        + +  FR    D     +   I  +   
Sbjct: 423 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 477

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +I+  +    D+T++K+  E I  +A+ D+LT +PNR    DRLT  L  +      +
Sbjct: 478 GTEIVGEVITFKDVTQRKQMEEEIKYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 536

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG + GD +L  +  R+   +     ++R  G+ F I L +  
Sbjct: 537 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 596

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++      +  S + P +L++ EI +  SIG + +  +  T+  ++KNA+ AMY +K
Sbjct: 597 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 656

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G+    F   + +   + + ++ DL  A+E  EL + Y P I     +I G+EALI+
Sbjct: 657 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 716

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+H + G I   +F+ IAEE  +I  I  ++L+   R +  W DQ   P I + +N++++
Sbjct: 717 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 775

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  ++L   ++ ++ +   SP  I+L  +E++++ N E +   + +L+ +GI+L +DDF
Sbjct: 776 QLEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 835

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           GT  S L YL  +P  T+K + S +   T+   AI  +II +AKN+   +IA+ +  +  
Sbjct: 836 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 895

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++ L+   C  +Q    + P+    I KL
Sbjct: 896 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 924


>gi|291615262|ref|YP_003525419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585374|gb|ADE13032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 814

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 154/724 (21%), Positives = 285/724 (39%), Gaps = 26/724 (3%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
               +   C  + L+S L   L       R               I ++   + +     
Sbjct: 95  PSSELLVWCLLMVLASLLRAALVYSPQTLRLDDAAAVQARLQKFRIGVVVAGAVWGSAGL 154

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
                     ++                 +  L+ A     +  + + + +    D+   
Sbjct: 155 LLFPAHHPQYVMFLIFTLAGMTAGGVISFSADLVSAVAFSVLLSLPVAIRLFVTGDHLSE 214

Query: 368 QPALVGGLVLIVILIGFTVIQH--------VLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
              +   L L  ++     I           +        +    ER  L +      ++
Sbjct: 215 AMGVAVLLYLGFMIASIRRINQNICENIILRIEAAAREGKVRESEERYRLLLSHLPVGIF 274

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            ++           +A +L  +   + G     +      D+      L   +   R   
Sbjct: 275 HYNTDLVITYCNDRLAELLHNSVEHVIGLDMKLVK-----DQA-ILPSLRKALEGERSNF 328

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           +  + +    +   W  I   P  + NG I   I I  DITE K + E I   AF D LT
Sbjct: 329 EGHY-LATYSDAEGWAYITCTPFHDHNGQIAGGIAIVQDITEHKAAEEKINNLAFYDPLT 387

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+  LDRL   L  SA        ++ ID+D +K +ND LG  +GD +L  + +R+
Sbjct: 388 GLPNRRLLLDRLQHALASSARSGR-EGALLFIDLDNFKALNDTLGHDMGDLLLRQVAQRL 446

Query: 600 GELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITV 654
              ++  D +ARL G+ F ++L            +       +   + +P  L+  E   
Sbjct: 447 ASCVREGDSIARLGGDEFVVMLEDLGGHDLEAAAQTEAVGEKILAMLGLPYQLVAHEYRC 506

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
           T SIG   ++  ++   E+LK A++AMY AK  G N V  F      +      ++ +L 
Sbjct: 507 TPSIGATLFSGHELAKEELLKRADIAMYQAKQAGRNTVRFFDQQMQDAVTARVALEGELH 566

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  +  L Y   +       +G EALI+W HP+ G +   +F+ +AEE  +I  I  
Sbjct: 567 KALDRQQFRLHYQIQVD-ASGRPLGAEALIRWMHPERGLVPPDQFIGMAEETDLILPIGQ 625

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++++     + +W+  A    + + +N+++      +    ++A + +    P  +KL  
Sbjct: 626 WVMDTACAQLKTWQQHAPTRDLVLAVNVSATQFHQLDFVFQVRATVQRHAIDPKLLKLEL 685

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES+++ N E +   +  L++IG+  +LDDFGT  S L YL  +P D +K + S +    
Sbjct: 686 TESMLLENIEDTIRTMNALKEIGVQFSLDDFGTGYSSLQYLKRLPLDQIKIDQSFVRDIA 745

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  I+ +II MA+N+   +IA+ +  E   + L   GC + Q      P+      
Sbjct: 746 SDSNDREIVGTIIAMAQNLYLDVIAEGVETEEQRQFLQDNGCTHFQGYLFGKPVPVEQFE 805

Query: 951 KLLK 954
            +L+
Sbjct: 806 AMLQ 809


>gi|302879164|ref|YP_003847728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581953|gb|ADL55964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 935

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 145/659 (22%), Positives = 280/659 (42%), Gaps = 23/659 (3%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + + P          + + +     ++ +       R + LI                + 
Sbjct: 290 TAFAPARQLQQHIWLVGAALGLLFAWLGWLMAGRIARPISLI----------SQAADKVA 339

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   L  G V  +      ++ ++       +         +     + + + 
Sbjct: 340 GGDLEYELPARLGEGEVAHLSTAIHDMVVNLTHEIKQRKEAEQGLRLSAKVFESNTEAIM 399

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRG 477
             D  ++ V        I G  +  + G     L          + F   L +       
Sbjct: 400 ITDAEQNIVMVNQAFTQITGYGADEVLGQRPKLLSSGRHGPEFYEAFWHALRA-----ND 454

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             + E   +  + +     + I  + +    I  Y+ +  DITE+KK  E I   A  D 
Sbjct: 455 LWRGEIWNKRKNGEIFPEWVTISALRDETSQISHYVAVFLDITERKKEEERINYLANYDV 514

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR    DR+      +  + N +  V+ ID+D +K IND LG  +GD +L  +  
Sbjct: 515 LTGLPNRYLLSDRIEQAFSSAQRN-NFKVAVLFIDLDYFKNINDSLGHDIGDALLKLVAA 573

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D +ARL G+ F  +L   ++S ++   A  M +S+     L E ++++T S
Sbjct: 574 RLKTCLRRSDTIARLGGDEFVALLSELDSSEEVIFVAEKMIESLTEKFTLGEYQLSITPS 633

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAV 715
           IG   +     TS E+L+NA+LAMY AK  G N+ + +     R   +R+ ++  L +A+
Sbjct: 634 IGICIYPDDGETSVELLRNADLAMYQAKDDGRNNFKFYSPDMNRKALERLKLETFLRVAI 693

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              +L + Y P + ++  ++ G+EAL++W HP+ G IS + F+ IAEE  +I  I  ++L
Sbjct: 694 VQQQLSVYYQPKVSVLSGKMTGMEALLRWQHPELGFISPAVFIPIAEETGLINEIGDWVL 753

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
            +       W+ Q     + I +N++++ L  +     +  ++ +       + L  +ES
Sbjct: 754 RQSCLQARLWQAQGYDI-VPIAVNLSARQLKQDNFAARVVTILREAGLDAHYLVLEITES 812

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           ++M   E    +L +LR  G+ L LDDFGT  S LS L  +P D++K + S +       
Sbjct: 813 MLMSTGESGLQILEQLRDDGVRLALDDFGTGYSSLSRLKNLPLDSLKIDQSFVRDIVTDP 872

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              +I+ +   +A  +   + A+ +  +  +  +  + C+  Q    + P+  + ++K 
Sbjct: 873 NDASIVSATAVLAHALNLKVTAEGVETQEQLDFIRMLNCEEYQGYLFSRPIPASEVVKY 931


>gi|206974300|ref|ZP_03235217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Bacillus cereus H3081.97]
 gi|206747540|gb|EDZ58930.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Bacillus cereus H3081.97]
          Length = 936

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 146/569 (25%), Positives = 277/569 (48%), Gaps = 14/569 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMH 446
           + +       Q +  + E   L +  +G+ ++  D+  +     P  A++LG      + 
Sbjct: 377 KELERVITELQQLSREKE---LILNSAGEGIFGLDLDGNITFCNPAGASMLGYDIKNELI 433

Query: 447 GPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   +     I    +    +  D        + +  FR    D     +   I  +   
Sbjct: 434 GKPSSMVFNGIEKGKKKQVASGCDEDW-NLYDKTEQFFR---KDQSSFPVEYVISSIK-E 488

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +I+  +    D+T++K+  E I  +A+ D+LT +PNR    DRLT  L  +      +
Sbjct: 489 GTEIVGEVITFKDVTQRKQMEEEINYHAYFDSLTDLPNRVLLKDRLTQGLTYAQLHAE-K 547

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG + GD +L  +  R+   +     ++R  G+ F I L +  
Sbjct: 548 LAVLYLDLDRFKFVNDTLGHSFGDLLLREVANRLSACVPKSATVSRQGGDEFTIYLPNIK 607

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++      +  S + P +L++ EI +  SIG + +  +  T+  ++KNA+ AMY +K
Sbjct: 608 SEKEVLKVVNRVIDSFSRPFHLVDNEIYMKTSIGISIFPDNGDTTEILVKNADTAMYKSK 667

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G+    F   + +   + + ++ DL  A+E  EL + Y P I     +I G+EALI+
Sbjct: 668 EISGSSYHFFSEGMDTRTFESIKLENDLYKALEQEELVIYYQPQINGKTNKIEGVEALIR 727

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+H + G I   +F+ IAEE  +I  I  ++L+   R +  W DQ   P I + +N++++
Sbjct: 728 WNHQEHGMIPPDKFIPIAEETGLIVPIGEWVLKEACRQLKKWHDQ-GSPLISMSVNLSAR 786

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  ++L   ++ ++ +   SP  I+L  +E++++ N E +   + +L+ +GI+L +DDF
Sbjct: 787 QLEQSDLFAMVKNVLEEVELSPKYIQLELTENLIVRNTESTLKTMKKLKGLGINLAIDDF 846

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           GT  S L YL  +P  T+K + S +   T+   AI  +II +AKN+   +IA+ +  +  
Sbjct: 847 GTGYSSLGYLKKLPISTLKIDKSFVQDMTKDDAAITNTIITLAKNLNLDVIAEGVETKEQ 906

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++ L+   C  +Q    + P+    I KL
Sbjct: 907 VEFLSARNCYLMQGYFFSRPMAAEDIEKL 935


>gi|74316103|ref|YP_313843.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055598|gb|AAZ96038.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 738

 Score =  558 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 148/664 (22%), Positives = 292/664 (43%), Gaps = 26/664 (3%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
           +  + L    L     + +   +  +  V+++          I   +   +    D ++ 
Sbjct: 75  VILLDLGMPDLSGAEVLRFVADRSADTPVIVVSGD-----STIDAAIRALRGGAADFVRK 129

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
                 +L  +    T  +      +  Q +    +     V  S D ++  D       
Sbjct: 130 PYEPEELLRRVDNTLTRRRLERENNHILQRLQQSEKWHRFLVNSSPDFIYTLDCDGRFTF 189

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV---- 485
               + ++LG     + G   ++   IH  D      + +      R     E R+    
Sbjct: 190 VNDRVESLLGYTREDLLGQ--HYSTIIHEEDLARAEHVFNERRAGDRSARNIEIRLKCNP 247

Query: 486 -----RAADNQFHWMIIRIRPMSNSN-----GDILRYIGIANDITEQKKSLEGILCNAFQ 535
                R  + +   + +    M + +        +   G+A D+TE+K++ E +   A+ 
Sbjct: 248 GMRRPRLMNGRCKAVELTATGMYDEDATLFERRFIGSYGVAKDVTERKQAEETVHYQAYH 307

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR  F D L  +L  +         V+ +D+D +K IND LG  +GD++L+++
Sbjct: 308 DLLTGLPNRALFRDHLALMLAQAKRSHKT-LAVLSLDLDHFKVINDSLGHTIGDELLLAV 366

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ + L+  D LARL G+ F ++L +  +   +      + + ++ P+ +   EI ++
Sbjct: 367 GARLRQCLREGDTLARLGGDEFAVLLPTLLSRGDVEQICRKIIQVLSRPVYVKGHEIYIS 426

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCL 713
            SIG             +++ AE+AMY AK +G + ++ +          R+ I+ DL  
Sbjct: 427 VSIGACVAPDDGEMIDSLIRQAEIAMYQAKAQGRSRLQFWEAGMQAPYSERMQIEADLRR 486

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +E  L Y P +  +  E+ G EAL++W HP+ G +S +EF+ +AEE  +I  I  +
Sbjct: 487 ALARNEFVLFYQPQVDTVSGEVRGFEALLRWWHPQRGFLSPAEFIPVAEESGVIVPIGDW 546

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L   +  +  WR     P + + +NI+++ L   +  E +   +        +I+L  +
Sbjct: 547 VLREASAQMAEWRRAGL-PQVRLSVNISARQLESPDFVESVMRAVQVHALDGQQIELEIT 605

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           ES++M + E + + LGRL   GI L +DDFGT  S   YL   P  T+K + S +     
Sbjct: 606 ESLLMRDFEANAIKLGRLSASGIRLAIDDFGTGYSSFKYLSRFPIHTLKIDQSFIQELER 665

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           E+ ++I+ +++ M + +   ++A+ +  +  +  L +M C  +Q  + + P+  +    L
Sbjct: 666 EENLSIVNAMVAMGRGMNLNVVAEGVETQSQLACLQQMQCHEMQGHYYSVPMSGHDATAL 725

Query: 953 LKER 956
           L   
Sbjct: 726 LGRH 729


>gi|256830096|ref|YP_003158824.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Desulfomicrobium baculatum DSM 4028]
 gi|256579272|gb|ACU90408.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfomicrobium baculatum DSM 4028]
          Length = 1158

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 159/655 (24%), Positives = 290/655 (44%), Gaps = 10/655 (1%)

Query: 305  MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
               ASI        ++      +   +   +R  LL  A  L       L   +      
Sbjct: 503  PAMASIFGYDSLDSLMAGAKGFLQRAISSSDRVRLLSQALKLGTAQNFELDAFMAGGKKT 562

Query: 365  DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             I             I      ++ V       + +             S   +      
Sbjct: 563  WISINMRTVKRSDGSISHLEGSVRDVSKRKKAERRLAIQKGLFQQLFDNSPQGILLLGKD 622

Query: 425  RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
               +   P   ++ G A   +H     +   +H +  D     + + +      +  E +
Sbjct: 623  GAPMDINPSFTSLFGYARSDLHAL---FEMLLHPDSLDESYAFVSTVLSG--TSVSTETQ 677

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             R  D +   + +   P    +G I     I +DI+E+K     +   A +DNLTG+PNR
Sbjct: 678  RRTKDGRIIPVSMLGYPYV-LDGTISGAFFIFSDISERKNYEAQLTRQALRDNLTGLPNR 736

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
              F+DRL   +     +   R  V++ID+D +K++ND LG   GD +L  +  R+   L+
Sbjct: 737  VLFMDRLNRAMTRQQRNGEYRFAVLMIDLDSFKRVNDTLGHQAGDHLLQEVAARLTHCLR 796

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              D +AR+ G+ F ++L    N+ +       +  +I  P+ + +R++ V+AS+G    T
Sbjct: 797  TMDTVARMGGDEFAVLLEDFQNNHEAIGITRRLLDTIRQPLKIQDRDVLVSASVGVVLQT 856

Query: 665  SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYL 722
            +   + +++L++A+++MY +K  G N  + F  S        V ++ DL  A+   E  L
Sbjct: 857  ARYTSPNDLLRDADISMYRSKELGKNQFKVFSKSMYEQVVQTVQLENDLRQALVEDEFEL 916

Query: 723  VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
             + PI  L  +++ G EALI+W+HP+ G++   EF+ +AEE  ++  I  +++ R  R +
Sbjct: 917  FFQPIYALSGQKLRGFEALIRWNHPQRGHLPPGEFIPVAEETGLVTEIGKWVMRRGCRVL 976

Query: 783  ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
              W+ Q     I + +N++ KDLL   L   +  L+ +T      +KL  +E+ VM NPE
Sbjct: 977  AGWQSQFPGLDISLSLNLSPKDLLQASLVPVLTELLHETGLDARHLKLEITETAVMDNPE 1036

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            ++   L RL+K+G  + +DDFGT  S LSYL  +P D +K + S +         + I++
Sbjct: 1037 QATSRLERLQKMGFQIAMDDFGTGYSSLSYLQRLPIDILKIDRSFVQTMLENPNNLEIIK 1096

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +II + K ++  I+A+ +     ++ L  +GCD  Q   +  P+       L+  
Sbjct: 1097 AIIGLGKILDLRIVAEGVETRQQLETLQELGCDLAQGFLLGRPMSKEQTESLISA 1151



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 6/148 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSM 445
           +   ++     + +    ++       + + ++   +  D ++  P +A+I G  S  S+
Sbjct: 458 LALAISRNATEKALSQSEKKHRAIFENATEGIFQISLDHDLLSANPAMASIFGYDSLDSL 517

Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
               + +L   I  +DR      L   +     +  +E     A  +  W+ I +R +  
Sbjct: 518 MAGAKGFLQRAISSSDRVRL---LSQALKLGTAQ-NFELDAFMAGGKKTWISINMRTVKR 573

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN 532
           S+G I    G   D++++KK+   +   
Sbjct: 574 SDGSISHLEGSVRDVSKRKKAERRLAIQ 601



 Score = 46.1 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 12/155 (7%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +I+ +       + +    +     +    D     D     +     +  + G+ 
Sbjct: 158 LILVLIRDISDRAMAEEALLGVQQHLDHIIEFLPDATLVVDNEHRVIAWNRAMEGMTGVP 217

Query: 442 SGSMHGPIRNWLP---YIHI---------NDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
              + G          Y H           D  +   + +       G     F    + 
Sbjct: 218 KEEILGKSGYEYGTPFYGHPRPILLDFIGKDPSHDYPMYEPTQSNLEGLATEIFVPLLSG 277

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            +  ++  +   + + +G+I   I    DIT++K+
Sbjct: 278 GRGAYVWAKASALYDKDGNIAGAIQTIRDITDKKR 312


>gi|307153992|ref|YP_003889376.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
 gi|306984220|gb|ADN16101.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 905

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 147/575 (25%), Positives = 279/575 (48%), Gaps = 9/575 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +         +     R    +  + DI+   D        +P +  ILG  S  +   
Sbjct: 331 ELAQRQRVEMTLRQSERRFRALIENAADIIVILDAQLRFSYLSPSVERILGYHSHELMHT 390

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNG 507
             +    IH ++   F   L+  +      L   E+R+R   N +  +   +  + N + 
Sbjct: 391 --SIFTLIHPDEAAEFTKALNRIIENPATTLNPLEYRIRTYHNTWLIVETLLSNLLN-DP 447

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   +   ++IT++K+    +  +A  D LTG PNR   +DRL   +            
Sbjct: 448 CVQGIVLNCHEITQRKQIEAQLRHDALHDTLTGFPNRALLMDRLAQAIKREKRRFGSNFA 507

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D++K +ND LG  +GD++LV+   R+ ++ +  D +ARL G+ F I+L      
Sbjct: 508 VLFLDLDRFKLLNDSLGHLIGDELLVAFAERLQQVRRSTDTIARLGGDEFVILLEDLCKV 567

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +    A  + + ++    + ++E+ +TASIG A         +++L++A+ AMY+AK+R
Sbjct: 568 EEAILVAERINQVLSSSFIIDQQEVFITASIGVAFSAYRYQQPAQILRDADTAMYYAKNR 627

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G    E F  S       ++ ++ DL  A+E  EL + Y PII L    + G+EAL++W 
Sbjct: 628 GRARYEVFDPSMHIHALRQLHLENDLRRAIERDELVVYYQPIISLTTGSLQGVEALVRWR 687

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKD 804
           HP+ G +S +EF+ IAEE  +I A++ ++L      +  W+ +     PI + +N++ + 
Sbjct: 688 HPQQGMVSPAEFIPIAEETGLIVALDQWVLNAACEQMRLWQQEYPYLEPITVSVNLSGRQ 747

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L + + +++++T      +KL  +E+V++ NP  +  +L +L +  I + LDDFG
Sbjct: 748 FSQPDLIKKIDSILNQTGLEGKYLKLEITETVLIENPNSAAEMLQQLIERKIQVCLDDFG 807

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L YL   P D +K + S ++   + R   +I+R+II +A+ +   +IA+ +  + 
Sbjct: 808 TGYSSLGYLHRFPLDILKIDRSFVSNIEQNRSNSSIIRTIITLARELGIRVIAEGVETQE 867

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               L  +GC Y Q    + P+    +  L+  + 
Sbjct: 868 QRLFLQSLGCHYGQGYWFSPPIDSTKLSNLMTNKL 902


>gi|119897781|ref|YP_932994.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119670194|emb|CAL94107.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 1089

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 159/576 (27%), Positives = 279/576 (48%), Gaps = 15/576 (2%)

Query: 389  HVLATGYFSQGIFSDGERQSLAVLGSGDIVW----DWDIVRDRVTTTPDIATILGLASGS 444
              L      Q + +  E ++ A+  S + +     D       +   P      G  +  
Sbjct: 510  RTLRARVEQQQLAATLELRNRAIEESTNAIVISHADRAADNPIIYVNPAFTVTTGYGADE 569

Query: 445  MHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G    +L  I  + D+     + ++      G  +   R    D Q  W  I +  + 
Sbjct: 570  VLGRNARFL--IDNDWDQPAVERLREAVREG--GDARVTLRTYHKDGQLLWNEISLASIR 625

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++ G++  +I I ND+TE+ +    +   A  D LTG+ NR    DR+   +  +A D +
Sbjct: 626  DAQGEVSHFIAIFNDVTERVRYEAELEQQATHDALTGLANRNLLNDRMQRAIIRAARDGH 685

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                VM++D+D++K IND LG A GD +L    RR+   ++  D +ARL G+ F +++  
Sbjct: 686  A-VAVMLLDLDRFKLINDSLGHAAGDALLQETARRLSASVRRGDTVARLGGDEFMVVMSD 744

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +     A  A  + +S+A P+ L  REI  T SIG + +      ++ +LK+A++AMY 
Sbjct: 745  MSAEDAAAALAAKVLESLAEPMLLNGREIVATGSIGVSLYPRDGEAAATLLKHADVAMYR 804

Query: 684  AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G N  + +          R+ ++  L  A+EN EL L Y P + L D  ++G EAL
Sbjct: 805  AKELGRNRFQFYAPEMNERILERLELENSLRRALENDELELHYQPKVSLRDGRVIGAEAL 864

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            I+W HP+ G +S ++F+ +AEE  +I  I  ++++   R + +W D    P I + +N++
Sbjct: 865  IRWRHPQLGMVSPADFIPLAEETGLIVPIGEWVVDHACRQLRAWLDAGL-PQISVAVNVS 923

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            ++     +L   +   ++     P ++ +  +ES VM  PER+   L  L+ IG+ ++LD
Sbjct: 924  ARQFQHEQLTHVLARALAAHRLPPGQLHVEVTESAVMCEPERTIFTLRELKNIGVRISLD 983

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT    L+YL   P D++K +   +T    + +  AI   I+ +A ++  T+IA+ + 
Sbjct: 984  DFGTGYCSLNYLKRFPIDSIKIDRCFVTDLATSAEDAAIALMIVSLAHSLNQTVIAEGVE 1043

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             E  +  L R GCD +Q    + PL      +LL  
Sbjct: 1044 NEAQLDFLRRHGCDEMQGFLFSRPLPAAEFARLLAA 1079


>gi|117918591|ref|YP_867783.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117610923|gb|ABK46377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1077

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 161/643 (25%), Positives = 300/643 (46%), Gaps = 16/643 (2%)

Query: 324  YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
               +Y     +  A+ L     +I  + + +   I   +      P L   +        
Sbjct: 429  LLGLYLFSAIFTAAITLWLGRKIIRSFMVKIT-KIANDMQQMAADPQLNINIDASGTDEL 487

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              + Q +       Q       R +     S + +   D         P  + I G +  
Sbjct: 488  ARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELINPAFSQITGYSLE 547

Query: 444  SMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L    H      +  + ++   ++ G+ + E   +  D Q +   + I  +
Sbjct: 548  EVKGRSPSILSSNRHP--HHYYTAMWEAL--HKEGKWEGEIWNKRKDGQVYPEYLAITVV 603

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             N  G+I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F +RL   + L+  D 
Sbjct: 604  RNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPNRKLFNERLQHEIQLAQHDS 663

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              +  +++ID+D++K INDV G A GD +L  + +R+  +    D +AR+ G+ F +IL 
Sbjct: 664  R-KLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAGKNDFVARIGGDEFVLILP 722

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               N   I   A  + +++A P NL EREI ++AS G   +    +  S + +N E+AMY
Sbjct: 723  RVTNEFAIEHMASRIIETLATPFNLNEREIQISASFGIGVYPEDGLDVSSLTRNTEMAMY 782

Query: 683  HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G N+ + F   ++     R+ +++ L  AV   E  L Y PI+ +   +I  +EA
Sbjct: 783  QAKDAGRNNFKYFTSGMNQAMFARMELEQRLRRAVAQDEFTLFYQPIVDMKTGQICSVEA 842

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+W  P  G I   +F+ IAEE  +I+ +  ++L +   D+  W+       + + IN+
Sbjct: 843  LIRWQDPDLGLIPPDQFIAIAEETGLIEPMGEWVLNQAMHDLRQWQHMGLN--LNVAINV 900

Query: 801  ASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            +S+  ++       + +Q   ++   +P  + +  +ES++MG+       L  +R +G  
Sbjct: 901  SSRQCINTRGIGFDQVLQECFNRHHINPRNVHIEITESMLMGDASHCLSTLESIRHLGSQ 960

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + +DDFGT  S LSYL   P   +K + S +  + E      ++++I+ M +++E  ++A
Sbjct: 961  IYIDDFGTGYSSLSYLKKFPISVIKIDRSFVEHALENCSNANLVKAIVMMGQSLEMELVA 1020

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + I  E   + L  +GC Y Q   ++ PL F+ I  LL +  P
Sbjct: 1021 EGIETEAQWQFLRDLGCHYAQGYLLSKPLPFDEITPLLGQTLP 1063


>gi|295402578|ref|ZP_06812526.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975377|gb|EFG51007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 953

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 157/630 (24%), Positives = 286/630 (45%), Gaps = 24/630 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALV------GGLVLIVILIGFTVIQHVLATGY 395
           P +       +                 AL        G    V L     +Q V+   +
Sbjct: 327 PTFTPFSFAELVTKDRYAPMHPATFSMVALSEKNRHRAGSGASVSLPIPKSLQGVMTLAH 386

Query: 396 FSQGIFSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                  + ER  +           + DIV+  D+  +     P    +LG     +   
Sbjct: 387 LLSATSREMERLHVCRQISQSLFEHNTDIVYSTDLHGNLTNVNPAFEKVLGYKREEVLHT 446

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L YIH ND           +  +      E  +     +     I+  P+   +G 
Sbjct: 447 NA--LKYIHPNDVRRVSMHFYRALRGKIQYYNLE--IPTKSGKPLLFQIKNVPIV-VDGK 501

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +   GI  DITEQKK+ E I   A+ D  T +PNR  F++ +T  L+ +    N +  V
Sbjct: 502 KVGIYGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIITEQLEKAKR-KNRKLAV 560

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D++K+IND +G   GD++L  + +RI  +L     L R  G++F ++L  + +S 
Sbjct: 561 VFIDLDRFKRINDSIGHYAGDEILKQVVQRILHVLPIEAHLGRFHGDKFCLLLTGQIHSE 620

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           K+ + A  + K +  PI    +E  +TASIG + + S  + +  +LKNA++A+  AK  G
Sbjct: 621 KVFETATRIAKEVTKPIVYDGKEFFITASIGISFYPSDGVDAHSLLKNADIAVSRAKRSG 680

Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           GN V+ +  +++     R+ ++  L  A+E  EL+L Y PI+ +   +IVG EALI+W H
Sbjct: 681 GNRVQFYSAKMNDETLHRLEMERYLRKALEKRELFLCYQPIVDITTGKIVGNEALIRWRH 740

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK G +   EF+ +AEE  +I  I  ++LE   +    W+       + I +N+++    
Sbjct: 741 PKLGLVRPDEFISLAEETGLIHEIGRWVLETACKQTKKWQA-LGNQQLSIFVNVSAAQFQ 799

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  ++  ++++  SP  + L  +E+ ++ N   S  ++  L++IG+ + +DDFG+ 
Sbjct: 800 HESFINDVKRALAQSQLSPDCLHLELTENSMLRNLHHSIQVMKELQRIGVGIAIDDFGSG 859

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  SYL  +P + +K + S +         IAI++++I M   +   I+A+ +  +  +
Sbjct: 860 YASFSYLKNLPANILKIDRSFIKQIHTNSSDIAIVKAMITMGHGLGMKIVAEGVETDEHL 919

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + L  + C Y+Q   +  P     +   + 
Sbjct: 920 QLLKMLRCHYVQGYALYRPATAEELSAHIT 949


>gi|127514356|ref|YP_001095553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella loihica PV-4]
 gi|126639651|gb|ABO25294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella loihica PV-4]
          Length = 1484

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 134/563 (23%), Positives = 265/563 (47%), Gaps = 14/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  D +  + A   + + V   D       +     +ILG+++  +      +   +
Sbjct: 925  QRMLEDDVKLLAQAFANTSEGVLILDADERVRVSNKAAQSILGMSADDLIDRY--FAQLV 982

Query: 457  HI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H   DR      ++  +         E   + A+     + + +  M +  G+I  Y+ +
Sbjct: 983  HSSEDRS---DEINILLEQGI-TWTGEHEFQCAEGLICPVWLNLSTMKDDRGNISHYVAV 1038

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   +  +   ++ +  ++ +D+D+
Sbjct: 1039 FSDITERKQTEADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTED-KLALIFLDLDR 1097

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV    R+   +     L R  G+ F I++    +  ++     
Sbjct: 1098 FKNVNDSYGHSMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVNHLCE 1157

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            A+ + I  P  L  RE  ++ SIG + W         ++KNA+ AMYHAK  G  + + F
Sbjct: 1158 ALIRQIEKPFELYGREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGNFQYF 1217

Query: 696  --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                ++     + ++ +L  A++  E  L + P I +  D+++VG+EAL++W HPK G I
Sbjct: 1218 SAERNAEALYHLKLEAELRKAMDRQEFELYFQPQIDILKDDKVVGMEALLRWHHPKEGYI 1277

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                F+ +AE   +I  I+ +++++       W +      + + +N+++      +  +
Sbjct: 1278 RPDIFIRVAESCGLIIEIDRWVIKQACLQGAKWAEHFGDE-LKLSVNVSAVHFRQPDFIQ 1336

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             +Q  + ++      + L  +E V+M     ++  L  LR+IGI + +DDFGT  S L+Y
Sbjct: 1337 DVQQALKESGMPAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAIDDFGTGYSSLAY 1396

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L      T+K + S +      E   AI  SII +A+N++  ++A+ +  +  ++++   
Sbjct: 1397 LRSFDVSTLKIDRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGVETQEQLEQVFSR 1456

Query: 931  GCDYIQDSHVASPLGFNSILKLL 953
            GC  IQ  + A P+  +   K L
Sbjct: 1457 GCYIIQGYYFAKPMTIDEFEKYL 1479



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 37/232 (15%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             + + A    ++ +    +R   ++ GS   +W+W    +       +    G      
Sbjct: 790 RQKQIGAFRRVNKKLKESEDRLRQSLRGSDSELWEWHSESETFL----LENRGGYFPDRG 845

Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                    + I+ +D++   T     +  +  RL  ++R R  D  + W  +R R +  
Sbjct: 846 DAFELKMDEFPIYADDQEKVFTAWKRLLSKQDDRLDVDYRYRRPDESWGWTRVRGRALEF 905

Query: 505 S--NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +G + +  GI  DIT Q+   + +   A           Q+F               
Sbjct: 906 DPVSGRVKKVAGIYTDITTQRMLEDDVKLLA-----------QAF--------------A 940

Query: 563 NLRPTVMVIDIDKY-----KKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           N    V+++D D+      K    +LG++  D +     + +       D +
Sbjct: 941 NTSEGVLILDADERVRVSNKAAQSILGMSADDLIDRYFAQLVHSSEDRSDEI 992


>gi|218442025|ref|YP_002380354.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218174753|gb|ACK73486.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 897

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 151/574 (26%), Positives = 290/574 (50%), Gaps = 9/574 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +         +    +R    +  + DI+   D        +P I  +LG +   + G 
Sbjct: 323 ELAQRQQIETALRQREQRFKALIENAADIIIILDAQFCFSYLSPSIKKVLGYSCEELIGQ 382

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             + L  IH ++   FR  L+  +      + + E+  R   + +  M   ++ + N  G
Sbjct: 383 --SILTLIHEDEEFVFRETLNKVIENPEISVSEVEYHFRTRHHTWSIMEGVVKNLLNEPG 440

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   +   ++IT++K +   +  +A  D+LTG+PNR   +DRLT  ++           
Sbjct: 441 -VEGIVLNFHEITQRKLAEAQLRHDALHDSLTGLPNRALLMDRLTQAINREKGRFYTHFA 499

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D++K +ND LG  VGD +L+S    + ++ +F D +ARL G+ F I+L   +  
Sbjct: 500 VLFLDVDRFKLLNDSLGHLVGDQLLISFANCLKKIRRFTDTIARLGGDEFVILLEDLSEV 559

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +    A  + + ++    + ++EI +TASIG A   SS    S++L++A+ AMY+AK+ 
Sbjct: 560 GQAIKVAQRINEILSSSFLIDDQEIFITASIGIAFSNSSYEHPSQILRDADTAMYYAKNN 619

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G    + F  S       ++ ++ DL  A+E  EL + Y PII L +  ++G+EAL++W 
Sbjct: 620 GRGKYQVFDSSMHIHALKQLQLENDLRRAIERDELVVYYQPIICLKNGTLIGVEALVRWQ 679

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKD 804
           HP+ G IS +EF+ IAEE  +I  ++ ++L    + +  W+++ +    I + +N++ + 
Sbjct: 680 HPQEGMISPAEFIPIAEETGLIIELDQWVLNTACQQMRFWQEKYSDFKSITLSVNLSGRQ 739

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L + +  ++++       +KL  +E+V++ NP  +  +L +L +  +++ LDDFG
Sbjct: 740 FSQPDLIKNIDNILTQNKLEKQYLKLEITETVLIENPNSAAEMLEQLIERKVTVCLDDFG 799

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L YL   P D +K + S ++          I+R+II +A+ +E  +IA+ I  E 
Sbjct: 800 TGYSSLGYLHRFPLDVLKIDRSFVSNIETNTSNSTIIRTIITLARELEIEVIAEGIETEQ 859

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + L  +GC Y Q    + P+    ++ L+  +
Sbjct: 860 QREFLQSLGCHYGQGYWFSPPVDGRELISLVNHK 893


>gi|116054303|ref|YP_788748.1| hypothetical protein PA14_07500 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115589524|gb|ABJ15539.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1245

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 159/568 (27%), Positives = 276/568 (48%), Gaps = 10/568 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +    ++ +     + + V   D  +         + I G +     G   + L   
Sbjct: 675  RQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSS- 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D   +  + +     R G  Q E   R    + +   + I  + N  G+I  ++G+ 
Sbjct: 734  GQHDSSFYLAMWNQL--ERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F  RL   LD +  +++    V+ ID+D++
Sbjct: 792  ADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEA-REESRPGAVLFIDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  +GD +L ++  R+ + L+  D +ARL G+ F I+L   +        A  
Sbjct: 851  KHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARK 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P      E  V+AS+G A +      +  ++KNA+ AMY AK RG + +E + 
Sbjct: 911  LLNAFTAPFQAEGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYT 970

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   ++R+ ++ +L  A+E  EL L Y P + L    +VG EAL++W HP +G IS 
Sbjct: 971  RELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE+  +I  +  ++L    + +  W+   + P   + +N+A   L   +L E +
Sbjct: 1031 ERFIPLAEDCGLILPLGDWVLGHACQQMGEWQK-LHAPFGPLSVNLAGAQLGQPQLIERL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + L+ ++   PSR++L  +ES +M   E +  +L  L+++G+ L +DDFGT  S LSYL 
Sbjct: 1090 EQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G        AI R+II + ++++ T+IA+ +  E     LT  GC
Sbjct: 1150 RLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGC 1209

Query: 933  DYIQDSHVASPLGFNSIL-KLLKERFPL 959
            + IQ   ++ PL       K LK R P+
Sbjct: 1210 EQIQGFVLSPPLPAELFASKFLKPRQPI 1237



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 5/171 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L+   V I++ +   + + V       + +    +     V     I W+
Sbjct: 268 MATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWE 327

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +  +R    +P    +LG   G        W   +H  D +       S     R   
Sbjct: 328 MRLEENRFTYVSPHAERLLGYPLGEWL-QPGFWQRTLHPMDAEYAIHYCMSESQAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++R+ AAD +  W+   + P+  + G  L   G+  DITE K + + + 
Sbjct: 386 SFDYRMLAADGRVVWIRDLVTPI--AQGRDLLLRGLMIDITEAKLTEQAMR 434



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 58/207 (28%), Gaps = 19/207 (9%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W L  +    L       L N  +      G     +L               VI+ 
Sbjct: 487 LGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
           +       + +    E+ + A     D +    +     +        + G     +   
Sbjct: 547 ITHLVETQELLRISEEKFANAFHAYPDGLLISRLEDGTLIDVNEGFTRLTGYRRDEVISR 606

Query: 449 IRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L   +   DR    +++      +     +   VR  +       +    + + +G
Sbjct: 607 STLELGLWVDTEDRKRLISLVRHHTLTQG----FTAPVRDRNGGIRQCEMSAHRI-SIDG 661

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF 534
           +    + IA DITE++   E +   A 
Sbjct: 662 E-DCVLTIARDITERQLMQEKLQQAAT 687


>gi|91794771|ref|YP_564422.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716773|gb|ABE56699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1502

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 145/550 (26%), Positives = 273/550 (49%), Gaps = 10/550 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +    + V   ++     +  P    I G     +      +L  I    RD +  +  
Sbjct: 958  VLYSMNEAVVVGELDYRVRSVNPAFTRITGFEPDEVTNKHFLFLA-ISSQGRDFYNQVET 1016

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              + ++      E ++R  D +     + I  + ++ G+   ++ +  DIT +KK+ E +
Sbjct: 1017 QLLKHK--HWAGELKIRTRDKKGILAWLEINQVIDNKGETSHFVAVFTDITARKKAEEDL 1074

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LT +PNR  F DRL   +  +  + N+   +  +D+D++K IND +G  +GD
Sbjct: 1075 RILANFDPLTHLPNRTLFQDRLDQAITKAHRNQNI-VALFFLDLDRFKHINDSMGHHIGD 1133

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L ++  R+   ++  D +ARL G+ F IIL        +   A  +  +   P  L +
Sbjct: 1134 LLLKAVAHRLQRAVREGDTVARLGGDEFTIILEGVTKLNAVTLVAEKILNAFQKPFLLDD 1193

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
            + +T++ SIG + +       S ++K A+ AMYHAK  G N+ + +    + + +  V +
Sbjct: 1194 KNLTISPSIGISLYPDDANDVSSLIKYADTAMYHAKSVGRNNFQFYTDQLNQYATRHVQL 1253

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +  L LA++ +EL LVY P   +  ++IVG EAL++W++P  G IS +EF+ +AEE   I
Sbjct: 1254 EAGLKLAIQENELSLVYQPKYDIFTKKIVGFEALLRWNNPSLGFISPAEFIPLAEETGFI 1313

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I  + + +    +  W +      + I +N++++ L   ++   ++  ++ +    S 
Sbjct: 1314 NQIGHWAINQACNQLAQWHELGFR-DVSIAVNLSARQLK-ADIISTIEVALAVSGLPASA 1371

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K +   
Sbjct: 1372 LELELTESMIMGNPQDSVAILSQLKSLGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1431

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +          AI  +II +A +++  +IA+ +     +  L   GCD +Q   ++ PL 
Sbjct: 1432 VRDITEDPDDAAITSAIIALAHSLDLNVIAEGVETPEQLDFLLNEGCDQVQGFLLSKPLS 1491

Query: 946  FNSILKLLKE 955
                L LLK+
Sbjct: 1492 AKDALALLKK 1501



 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 14/164 (8%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQG-------IFSDGERQSLAVLGSGDIVWD 420
                   ++ ++L    ++Q + +     Q        I +  ER  LA+  SGD +WD
Sbjct: 789 IYRTTLAYIIYILLGCIFILQAIHSRQKKQQKQNEFETSIKASEERLKLALWASGDGMWD 848

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           W+I  ++V  T            S+       +  IH  DR   + +L+  +       +
Sbjct: 849 WNIPDNQVFRTNMS------NPQSLSRSKSTLINSIHPEDRPKVQLLLNEHIAGNSEFYE 902

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
            E+R+R     + W++ R + +  ++NG  +R  G   DIT +K
Sbjct: 903 AEYRIRDEVGSWIWLLDRGKVVEKDTNGAPIRMAGTHKDITSRK 946


>gi|322418862|ref|YP_004198085.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320125249|gb|ADW12809.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 705

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 159/588 (27%), Positives = 289/588 (49%), Gaps = 23/588 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++G+ V   + A+G   Q +       + A   +    W+WD+    +  + ++ +I  L
Sbjct: 119 ILGYRVNYMLRASGALEQ-LRESRAGLAHAQSLAHIGSWEWDLTTGEIRCSEEVYSICCL 177

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     L  +H  DR   +  +D  +  RR  L +++R+   +     +   + 
Sbjct: 178 DRDRRDGNPI--LDPVHHQDRTFVQGSIDDAIA-RRAPLSFDYRIML-EGGERTLHAELV 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G+ +   G   DITE+K++ E I   A+ D LTG+PNR+ FL +L   L  +  
Sbjct: 234 TVLDEEGEAVCLTGTIQDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANR 293

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------- 611
           +D +   V+ +D+D++K +ND LG  VGD +L  +  R+   ++  D LAR         
Sbjct: 294 NDRM-LAVLFLDLDRFKLVNDTLGHGVGDRLLQDVADRLLRCVRRSDCLARAEGDCPPSL 352

Query: 612 ---LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              L G+ F I+L    +   +A  A  + +++++P +L  +E+ V+ SIG + +     
Sbjct: 353 VSRLGGDEFTIMLSDIEHFQDVAKVARRILEAVSVPYSLEGQEVFVSTSIGISLYPFDAS 412

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
           T+S++++NA+ AMY AK +G N  + +  S          ++  L  A++  E  + Y P
Sbjct: 413 TASDLIRNADGAMYQAKEQGRNGYQIYDESMNAKALERIILESQLHRALKEGEFAVYYQP 472

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I     E+VG+EAL++W+  + G +    F+ +AEE+ ++  I+  ++    R    W 
Sbjct: 473 QISCRTGEVVGIEALVRWNSKELGVVEPCRFLPLAEEIGLVIQIDQLVMRESCRQHKLWI 532

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           DQ   PP+ I +NI+ +  L NEL E + A++ ++   P  ++L  +E V+M + ER+  
Sbjct: 533 DQGL-PPVGIAVNISGQQFLKNELLETVTAVLEESGLDPGLLELELTEGVLMAHTERTVK 591

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            L  L+ +G+ L +DDFGT  S LSYL   P D +K + + +          AI  + I 
Sbjct: 592 TLQALKGMGVRLAIDDFGTGFSSLSYLKRFPLDVLKIDRTFIKDITSDPDDAAITLATIE 651

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           MA  ++  +IA+ +     +  L   GCD  Q    + P+    +L+L
Sbjct: 652 MAHTLKLLVIAEGVETRPQLDFLASNGCDTYQGYLFSRPVPPEELLRL 699


>gi|291614471|ref|YP_003524628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584583|gb|ADE12241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 807

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 140/567 (24%), Positives = 260/567 (45%), Gaps = 16/567 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            +  F    R +     S + +   D     +          G  +  + G   R +   
Sbjct: 239 ERKRFETDLRIAATAFESQESLMITDANSVILRVNNAFCKCTGYTTEEVVGKTPRIFKSG 298

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D++ +R + DS    R G  + E   R  + + +   + I  +  ++G +  Y+G 
Sbjct: 299 RH--DKEFYRAMWDSI--NRTGSWKGEIWDRRKNGETYPKWLTISAVRGNDGCVTHYVGS 354

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE+K + E I   AF D LT +PNRQ  LDRL   L  +A +   +  ++ ID+D 
Sbjct: 355 HVDITERKAAEEQIRRLAFHDPLTHLPNRQLLLDRLQQSLISTARNGK-KGALLFIDLDN 413

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKI 630
           +K +ND LG A+GD +L     R+   ++  D +AR+ G+ F ++L          + + 
Sbjct: 414 FKTLNDTLGHAMGDMLLQQAAERLTSCMREGDTVARIGGDEFVVMLEELSGQAIEAAEQT 473

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +  +++ P +L       + SIG   ++     + E+LK A++AMY AK    N
Sbjct: 474 EVVGEKILAALSQPYHLDNHTFRSSGSIGATLFSGDHQEAEELLKQADIAMYQAKKADRN 533

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F      +      ++ +L  A+E+ +  L Y   +      + G EALI+W+HP 
Sbjct: 534 TLRFFDHKMQDAINARAELEAELHKALEHQQFELHYQIQVDCASRAL-GAEALIRWNHPT 592

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G ++ ++F+ +AEE  +I  I L+++E     + +W        + + +NI+++    +
Sbjct: 593 RGLVAPAQFIPLAEETGLILPIGLWVIETACAQLHAWARDEKTRHLVLAVNISARQFHQS 652

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    ++A + +    P+  KL  +ES+++ + E++   +  L+  G+ L+LDDFGT  S
Sbjct: 653 DFVAQVRAAVQRNAIDPNLFKLELTESLLLDDTEKTVATMNALKATGVQLSLDDFGTGYS 712

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P + +K + S +          AI+++II MA  +   +IA+ +  E  ++ 
Sbjct: 713 SLQYLKILPLNQIKIDRSFVRDIATDPNDAAIVQTIIAMAGTLGLDVIAEGVETEAQLEF 772

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L   GC   Q      P+        L
Sbjct: 773 LDLRGCHACQGYLFGKPVSIREFESSL 799



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 8/125 (6%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + ER    +  SGD  W  D+    +      A + G ++  +     + L     +D +
Sbjct: 3   ESERYKRLIEDSGDGYWVVDLKGRLLEVNQVYARMAGYSADELVNRHVSELDA--QDDEE 60

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             +  ++  +     R   E R R        + + I  +  SN    R++    DI+E+
Sbjct: 61  AVKARMERLLAQGHDRF--ESRHRHKKGHLFEVDVAINFIHESN----RFLVSFRDISER 114

Query: 523 KKSLE 527
               +
Sbjct: 115 NMYEQ 119



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 55/151 (36%), Gaps = 3/151 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               + +     + Q +    E+       +GD+ +  D+       +  + T+ G    
Sbjct: 105 LVSFRDISERNMYEQALRESEEKYRRLFENAGDLAYGTDLNGAFTAVSESLLTVTGYGRN 164

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +     +    +   + +  R +  + +   +   +YE  + + D +   + + +  ++
Sbjct: 165 ELINAPIS--KILTPENLELARRMTAAKLAAEKQVTRYELEITSKDGRQIPLEL-VTTLT 221

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             NG  +   GI  DI+E+K+    +   A 
Sbjct: 222 YRNGVPVGVQGIGRDISERKRFETDLRIAAT 252


>gi|71909200|ref|YP_286787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848821|gb|AAZ48317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 827

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 160/566 (28%), Positives = 265/566 (46%), Gaps = 14/566 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              +  ER+ LA      +   +   D     ++  P    + G     + G     L  
Sbjct: 264 ERRASAEREQLAQKVYSHTPAGIIFTDDQHRILSINPATTEMTGYEPFELIGQTVFGLIS 323

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIG 514
           +   D    +      +  R G    E  V   +        RI  + +   G    Y+ 
Sbjct: 324 L---DEGISQKDFQEQISMR-GSWSSELEVTQKNGSNFPAGARINRVDDPQSGLPAHYVW 379

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DITE+K++ + +   A  D LTG+PNR + L RL  +L  +         VM ID+D
Sbjct: 380 ILADITERKQAEDRMRHIAQHDALTGLPNRLALLMRLAQLLPEARRH-GWTVAVMFIDLD 438

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD++L  +  R+  LL+  D +ARL G+ F IIL S ++    A  +
Sbjct: 439 RFKIINDTLGHQVGDEMLREVACRLSNLLRETDFVARLGGDEFVIILPSISSPADAAIVS 498

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  +++  I     E+  + SIG + +         +LKNA+ AMYHAK  G N+ + 
Sbjct: 499 GKIISALSTAIEAEGHELHTSPSIGISIFPDDGPDGDIVLKNADTAMYHAKAAGRNNYQF 558

Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   ++   ++R+ I+  L  A+  +EL LV+ P  R  D    G+EAL++W HP  G I
Sbjct: 559 FAADMNRTAAERLNIERKLRHAIARNELSLVFQPQFRAEDTTPTGVEALLRWHHPTDGMI 618

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+ +AEE  MI  I  ++L     ++  W +     P+ I +N++++ L   + CE
Sbjct: 619 SPARFIPVAEETGMIVEIGDWVLATACHEMARWINAGLK-PLRIAVNVSARQLRRRDFCE 677

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   ++ +      ++L  +ES VM NP+ +  +L RL ++G++L +DDFGT  S L+Y
Sbjct: 678 TVANALTTSGLPAELLELEITESSVMENPQEAIHILERLGRMGVTLAIDDFGTGYSSLAY 737

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K + S +          AI    I +A ++   +IA+ +  E   + L   
Sbjct: 738 LKLFPIDHLKIDRSFVADIEHDLNDRAIAFGTIALAHSLGLNVIAEGVETEDQHELLRAN 797

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD +Q    + PL   +    L  R
Sbjct: 798 GCDEVQGFLFSKPLTGAAAFAFLHAR 823



 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 47/176 (26%), Gaps = 21/176 (11%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            + +    L     L+  +  +T I    A       + +   +    +      V  +D
Sbjct: 111 THLVQGEPLFIDQQLVGFITTYTDITDRKA---AETALRTQHNQLQTVIESIPSAVSLFD 167

Query: 423 IVRDRVTTTPDIATILGLASG--------SMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              + V        +L + +                         D +     L      
Sbjct: 168 SAGNLVLFNTAFPRLLDVPAELAKPGVSMETLFRFNAMRGEYGPGDPEKIVATLMERAKN 227

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                   F     + +   + +R  P+  + G    ++ +  DI+E++ S E   
Sbjct: 228 PSHHY---FERTRPNGKT--LEVRGVPL--AEG---GFVTVYTDISERRASAEREQ 273


>gi|32492876|gb|AAP85527.1| MorA [Pseudomonas putida]
          Length = 1282

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 150/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G + G +   + N L   
Sbjct: 714  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYSVGEVLDQLPNMLTVD 773

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               D  + R +L     +     + E  ++  + + +   + I  + +  GD+  Y+   
Sbjct: 774  EQQD-AHLRYVLKQLHEHST--WEGEVWMKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 830

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL T L  +    +    +M +D+D +
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSW-VVLMFLDLDHF 889

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L   +N      +   
Sbjct: 890  KPINDSLGHAAGDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSNRELACNRAIH 949

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 950  VAEQILASLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1009

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP+ G
Sbjct: 1010 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1069

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  +++    R + +W  Q    P  + +NI+++   D +L
Sbjct: 1070 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQQRVRVP-KVSVNISARQFSDGQL 1128

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ +T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1129 GTRIATILRETGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSL 1188

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     +  L 
Sbjct: 1189 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1248

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1249 EHGCDEVQGYLFGRPMPAGRFEA 1271



 Score = 71.1 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 13/163 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      S+ +    +R  +      D+++  D        +P +  +LG  + 
Sbjct: 565 IGVAKDITEQIEASESLRDSEQRYRMLAESISDVIFSTDSKLSLNYVSPSVQAVLGYNAE 624

Query: 444 SMHGP-------IRNWLPYIHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQ 491
            +              L  IH+   D     LD     + +  +     + F    AD +
Sbjct: 625 WIFQNGWQSIIANPGQLNGIHVL-MDRVSKALDKPEQLALLRSQVQTQLFLFDCLRADGR 683

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              + +R+  + + +G     +G+  DI++Q+++ + +   A 
Sbjct: 684 KIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726



 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  V    D ++  D++  R + +   +   LG   
Sbjct: 432 ILSINDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNR 491

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +H     +    +H  D D +     L          LQ + R R  D ++    IR 
Sbjct: 492 TELHQMGEYFWEILLHPEDADYYHRSRQLQRH-AGYSQLLQCQLRFRHRDGKWRRFDIRE 550

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           + +  + +  + R IG+A DITEQ ++ E + 
Sbjct: 551 QALARDKHDQVTRIIGVAKDITEQIEASESLR 582


>gi|291613927|ref|YP_003524084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291584039|gb|ADE11697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 727

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 145/569 (25%), Positives = 269/569 (47%), Gaps = 16/569 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455
           ++G+    +        S   V   D   + V   P    I G  S  + G   + L   
Sbjct: 164 TRGLIDQRDLLETVFESSYSGVMITDAKGNIVEVNPAFTRITGYQSEEVQGRNPHLLASG 223

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D   +R + D  +    G  + E   R  + + +   + I P+ + +G++L Y+GI
Sbjct: 224 RH--DHTFYREMWDDILAN--GHWEGEIWDRRKNGEVYPSWMNINPVRDISGNLLYYVGI 279

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+T++K++   I   AF D LT +PNR+   +RL     + A   +    V+ +D+D 
Sbjct: 280 FSDVTKRKEAEAQIHQLAFYDPLTELPNRRLLNERLQQAFSVGARSGH-HGAVLFLDLDN 338

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKI 630
           +K +ND  G  +GD +L+ + +R+   ++  D +ARL G+ F ++L S ++     + + 
Sbjct: 339 FKTLNDTKGHDIGDQLLIEVAKRLNSCVRNGDTVARLGGDEFVVVLESLSSVPDEAATQA 398

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  +R +++ P  L       T SIG   +   + +  E+LK A+ AMY AK  G N
Sbjct: 399 DLVAEKIRYALSQPYQLANHVHRTTPSIGVVMFRGHQQSLEEVLKFADTAMYQAKTAGRN 458

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  +          R  ++E+L   VE ++L L Y   +       +G E L++W HP+
Sbjct: 459 AIRFYDPVMQASIEARAELEEELRQVVERNQLRLYYQVQMD-SSNRPLGAEVLLRWQHPE 517

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S ++F+ +AEE   I  I L++L+     +  W+       + + +N+++K     
Sbjct: 518 RGLVSPAQFIPMAEETGHIVPIGLWVLQTACTQLKVWQSDPLTCDLTLAVNVSAKQFRSM 577

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +Q  ++++   PS +KL  +ES+V+ N E +   +  L+ +G+S ++DDFGT  S
Sbjct: 578 DFVSQVQRTLAQSGAKPSLLKLELTESLVLENVEDTIAKMRELKLLGVSFSMDDFGTGYS 637

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P D +K + S +          AI+++II M++ +   +IA+ +  E   + 
Sbjct: 638 SLQYLKRLPLDQIKIDQSFVRDIASDSNDAAIVQTIIAMSEVLGLNVIAEGVETEAQREF 697

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L   GC   Q      P        +L++
Sbjct: 698 LDLRGCHAFQGYLFGRPAPLAEFEAILRK 726


>gi|300868717|ref|ZP_07113328.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300333278|emb|CBN58520.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1089

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 149/619 (24%), Positives = 266/619 (42%), Gaps = 59/619 (9%)

Query: 393  TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                 + +    +R    +  + DI    +        +P +  ILG       G     
Sbjct: 465  RKQAEEALRQREQRFRSLIENATDITVILNASGKYDYISPSVKRILGYTPQIAIGRNA-- 522

Query: 453  LPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L   H +D+      L   +      +   E+RVR     +  +      +   +  +  
Sbjct: 523  LSLAHPDDKAAIAQTLSKAIQNPGISQSPIEYRVRHRTGSWCVLEAVATNLL-HDPAVNG 581

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             +   +DIT +K + + +L +AF D LTG+ NR  F +RL     ++    +    V+ +
Sbjct: 582  IVINCHDITARKLAEQQLLHDAFHDGLTGLANRALFSERLDHAFAIAKRRKDYLFAVLFL 641

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND LG A+GD +L+++ RR+ + L   D +ARL G+ F I+L   ++     
Sbjct: 642  DLDRFKVVNDSLGHAIGDRLLIAIARRLEKSLHPGDTVARLGGDEFVILLEDIDSLSSAT 701

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            + A  + + +  P  L   E+ +T SIG A  +     ++ +L++A+ AMY AK +G   
Sbjct: 702  NLANLLHQELTSPFTLDGHEVFITVSIGIALSSPECEDAANLLRDADTAMYRAKEQGRAR 761

Query: 692  VESFRVSSFRS--DRVMIKEDLCLAVENS------------------------------- 718
             E F  S        + I+ DL  A+E                                 
Sbjct: 762  HEIFNTSMHAHALRLLQIENDLRKAIEAIKKEQYINSTAPKLQNSAATESNEQNIILSQL 821

Query: 719  ------------ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
                        +  + Y PI+ L+  +I G EAL++  HP+ G +S +EF+ +AEE  +
Sbjct: 822  PITNHHQPITIPQFLIHYQPIVSLLTGKITGFEALVRLQHPERGLVSPAEFIPVAEETGL 881

Query: 767  IKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  ++L    R I  W+ Q      + + +N++ K     +L   +  ++ +T    
Sbjct: 882  IIPIGQWVLRESCRQIRQWQQQFPHRLSLTVSVNLSVKQFSQPDLIAQIDRILRETDLDG 941

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
              +KL  +ESV+M N +    LL  L+   I L +DDFGT  S LSYL   P DT+K + 
Sbjct: 942  RSLKLEITESVLMENSKSVTALLKELKARNIHLCIDDFGTGYSSLSYLHRFPTDTLKIDR 1001

Query: 886  SLM------TGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            S +      +   +       I+RSI+ +A N+   ++A+ +     +  L  + CD  Q
Sbjct: 1002 SFVSRMGVESNINQGSIDPTEIVRSIVTLAHNLGMEVVAEGVEKASQLALLRALKCDGGQ 1061

Query: 937  DSHVASPLGFNSILKLLKE 955
                + P+   +   L+ +
Sbjct: 1062 GYFFSRPVDSWAAAALIAK 1080



 Score = 71.1 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIV----WDWDIVRDRVTTTPDIATILGLASG 443
             +       + +    ++ +         V     D D     +  +P +  I G++  
Sbjct: 322 AELAERKRAEETVLLIQQQFAAIATNIPGSVYRIAIDPDGKMSLLYISPGVQEITGISPA 381

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                  + +  IH +D+  F T L + +   +   + E+RV +   Q  W+        
Sbjct: 382 EAIARPESLIEIIHPDDKAMFDTSLQTSIETLQPCHR-EYRVISTSGQVKWVQDSGHFSK 440

Query: 504 NSNGDILRYIGIANDITE 521
           +SNG+++   G+A DI++
Sbjct: 441 DSNGNVI-VDGVALDISD 457


>gi|312112082|ref|YP_003990398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311217183|gb|ADP75787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 953

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 157/630 (24%), Positives = 286/630 (45%), Gaps = 24/630 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALV------GGLVLIVILIGFTVIQHVLATGY 395
           P +       +                 AL        G    V L     +Q V+   +
Sbjct: 327 PTFTPFSFAELVTKDRYAPMHPATFSMVALSEKNRHRAGSGASVSLPIPKSLQGVMTLAH 386

Query: 396 FSQGIFSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                  + ER  +           + DIV+  D+  +     P    +LG     +   
Sbjct: 387 LLSATSREMERLHVCRQISQSLFEHNTDIVYSTDLHGNLTNVNPAFEKVLGYKREEVLHT 446

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L YIH ND           +  +      E  +     +     I+  P+   +G 
Sbjct: 447 NA--LKYIHPNDVRRVSMHFYRALRGKIQYYNLE--IPTKSGKPLLFQIKNVPIV-VDGK 501

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +   GI  DITEQKK+ E I   A+ D  T +PNR  F++ +T  L+ +    N +  V
Sbjct: 502 KVGIYGIGRDITEQKKAEEKISYLAYYDPDTHLPNRTKFMEIITEQLEKAKR-KNRKLAV 560

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D++K+IND +G   GD++L  + +RI  +L     L R  G++F ++L  + +S 
Sbjct: 561 VFIDLDRFKRINDSIGHYAGDEILKQVVQRILHVLPIEAHLGRFHGDKFCLLLTGQIHSE 620

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           K+ + A  + K +  PI    +E  +TASIG + + S  + +  +LKNA++A+  AK  G
Sbjct: 621 KVFETATRIAKEMTKPIVYDGKEFFITASIGISFYPSDGVDAHSLLKNADIAVSRAKRSG 680

Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           GN V+ +  +++     R+ ++  L  A+E  EL+L Y PI+ +   +IVG EALI+W H
Sbjct: 681 GNRVQFYSAKMNDETLHRLEMERYLRKALEKRELFLCYQPIVDITTGKIVGNEALIRWRH 740

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK G +   EF+ +AEE  +I  I  ++LE   +    W+       + I +N+++    
Sbjct: 741 PKLGLVRPDEFISLAEETGLIHEIGRWVLETACKQTKKWQA-LGNQQLSIFVNVSAAQFQ 799

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  ++  ++++  SP  + L  +E+ ++ N   S  ++  L++IG+ + +DDFG+ 
Sbjct: 800 HESFINDVKRALAQSQLSPDCLHLELTENSMLRNLHHSIQVMKELQRIGVGIAIDDFGSG 859

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  SYL  +P + +K + S +         IAI++++I M   +   I+A+ +  +  +
Sbjct: 860 YASFSYLKNLPANILKIDRSFIKQIHTNSSDIAIVKAMITMGHGLGMKIVAEGVETDEHL 919

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + L  + C Y+Q   +  P     +   + 
Sbjct: 920 QLLKMLRCHYVQGYALYRPTTAEELSAHIT 949


>gi|56750401|ref|YP_171102.1| hypothetical protein syc0392_d [Synechococcus elongatus PCC 6301]
 gi|56685360|dbj|BAD78582.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1059

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 152/573 (26%), Positives = 278/573 (48%), Gaps = 8/573 (1%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +I  +         + +  ER  L      D+V         +  +P    +LG +S  
Sbjct: 486  GLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGTYLYVSPSAEALLGFSSEE 545

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            M G       + H  D D  R      V      L   +R+R     + W     +P+ +
Sbjct: 546  MVGQNPY--DFFHPEDCDRIRDEAHQAVL-MGAELPIVYRMRKKLGGYIWFETLTKPIMD 602

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              G ++     + D+T++ +    +  +A  D+LTG+ NR   ++RL   L  S    N 
Sbjct: 603  DQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRLQNY 662

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            +  V+ +D+D++K IND LG   GD +LVS+ +++  +++  D+ ARL G+ F +++   
Sbjct: 663  KYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLVEDI 722

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +    A  +  +I +P+ L ER I  + SIG    +    +++++L++A+ AMY A
Sbjct: 723  QTFDEPIKVAERILAAIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRDADTAMYRA 782

Query: 685  KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K RG    E F   + S    R+ ++ DL  A+   E  L Y PII+L   +I G EALI
Sbjct: 783  KSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGKITGFEALI 842

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801
            +W HP  G     + + IAEE  +I +I+ ++L +  R +  W+   +    + + +N++
Sbjct: 843  RWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQACRQLSEWQASYSQAADLSMSVNLS 902

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +++L  + L + +Q+++  T   P  + L  +ES+++ N +++  LL  + + GI +++D
Sbjct: 903  AQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLAAINEQGIEISID 962

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S LSYL  +P + +K +GS +   T +     I+ +II +   +    IA+ I 
Sbjct: 963  DFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNNQLGLKAIAEGIE 1022

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                +  L+++G  Y Q    A PL    + +L
Sbjct: 1023 THEQLDLLSQLGYQYGQGYLFARPLNAKDVEQL 1055



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLA 441
           + Q +         +     R          I++ +    D        +     + G+ 
Sbjct: 356 IQQELSDRSKAELALQESQTRFQRIADNLPGIIYGYKLRQDGTDQFTYISSGFREVYGID 415

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +           IH  D +  +T +           + E+R+   + +  WM  R RP
Sbjct: 416 PETALENSNVVWGMIHPEDIEYLKTSIIKS-QQTLKTWKVEYRIITKNGELKWMQGRARP 474

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
               NG+   + G+  DI+++KK    + 
Sbjct: 475 TRQENGE-TFWDGLIIDISDRKKIEAELQ 502



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            +L    +     +            F +  R    V    D++         V     +
Sbjct: 42  ALLAESDLVTEESEQASTGRLAIDQYFRESLRYQQVVEAQTDLILRSRSDTTVVFANKPL 101

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG   G + G    W   +  ND       +   +       +   R   AD +  W
Sbjct: 102 CQVLGWQDGDISGQ--TWGNLVPPNDLSELHEKIAG-LSLENPTFESLNRNYGADQRIKW 158

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    + + N  G+++    +  D+T   + +       +
Sbjct: 159 IQWVNQGIFNDRGELIEIQSVGRDVTTLIEQITREKTLNY 198


>gi|189424128|ref|YP_001951305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Geobacter lovleyi SZ]
 gi|189420387|gb|ACD94785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Geobacter lovleyi SZ]
          Length = 1027

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 154/578 (26%), Positives = 270/578 (46%), Gaps = 16/578 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             I  + A    S    S+   + L   +  S   V   D              + G +  
Sbjct: 453  RIGAIEAIRDISDRKQSELFLKKLTHGIENSASAVVITDTQGVIEYVNKKFIQLTGFSLE 512

Query: 444  SMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               G     L            F  +  + +  R    + E   R  + + +W I  I P
Sbjct: 513  EAVGKNPRILKSEATPPE---VFVDLWKTILSGR--EWRGELLNRRKNGEVYWSITSISP 567

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + N +G+I  +I    DI E+K +   I   A+ D LT +PNR+   DRL   L  S   
Sbjct: 568  LRNDSGEITHFIANVEDINERKNAEATIEHLAYFDPLTDLPNRRMLQDRLELALRRSRRH 627

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +    +M +D+D +K +ND +G   GD +L  +  R   +++  D++ RL G+ F +IL
Sbjct: 628  GS-NVALMYLDLDSFKHVNDSMGHPAGDLLLKEMAGRFSGVVRDDDVVCRLGGDEFALIL 686

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +    +   A  + +++A P+ L  RE+ VTASIG A +         + K+A++A+
Sbjct: 687  HDIHQDQDVVPIAQKLIEAVAQPVPLDGREVVVTASIGIALFPRDGGDVKNLEKHADIAL 746

Query: 682  YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            YHAK  G N    +      +   R+ +++ L  A E  EL L Y P + +   ++ G+E
Sbjct: 747  YHAKEEGKNTFRFYLEELNSTISTRIALEQGLRYAKERQELELHYQPKVCVASGKVSGVE 806

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W  P +G +S   F+ +AE+  +I  I  ++L       + WR+Q  +  + + +N
Sbjct: 807  ALLRWHSPDFGLVSPIRFIPLAEQTRLIIPIGEWVLRTACLQQVQWREQGLL--LNMAVN 864

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +++  L    L E + A+I +T   P  ++L  +ES ++ NP+    LL RLR +G S++
Sbjct: 865  LSAIQLKSPGLVERVAAIIDETGIQPEHLELELTESALVNNPDEVVQLLERLRTLGCSIS 924

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S LSYL   P   +K + S +          AI RS++ +A N++   +A+ 
Sbjct: 925  IDDFGTGYSSLSYLKSFPVTILKIDRSFVRDLAHNSGDRAIARSVVDLANNLDMKTVAEG 984

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  E  +  L ++GC YIQ    + P+  + +  +++ 
Sbjct: 985  VESEEQLTILQQIGCTYIQGFIYSRPVQADQVSAVVRR 1022



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 14/193 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDGERQSLAVLG 413
            A   +   +      +   + I  LIGF   Q   +       Q +    ++ +  +  
Sbjct: 286 HAGWHKHAVNQAITFSIIVALSISALIGFQGYQREQLAKARAVEQALLDARQQLNDIIDF 345

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFV 472
             D V+  D  +        I  + G+    M G   +      +   R     +LD   
Sbjct: 346 FPDAVFVIDRNKRVTIWNRAIEKMSGVPKEEMLGKGDHEYSIPFYGQRRTQLLDLLDLDD 405

Query: 473 GYRRGRLQYEFRV-----------RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +     RV              D +  ++     P+ N+ G+ +  I    DI++
Sbjct: 406 AELAAKYSNIRRVGEVLDAETFCPALHDGKGAYVWATGVPLYNAAGERIGAIEAIRDISD 465

Query: 522 QKKSLEGILCNAF 534
           +K+S   +     
Sbjct: 466 RKQSELFLKKLTH 478


>gi|118579162|ref|YP_900412.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Pelobacter propionicus DSM
            2379]
 gi|118501872|gb|ABK98354.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
            2379]
          Length = 1238

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 156/567 (27%), Positives = 261/567 (46%), Gaps = 12/567 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLP 454
              +   +  E        + + +   D  +  V+         G  +  + G        
Sbjct: 671  ARRRAEATLELWGRVFECTSESIMITDAAQRIVSVNQAFCATTGYRAEEIIGQSSLALRS 730

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             +H  D   FR +       +RG  Q EF  R  + +     + +  + +  G +  YI 
Sbjct: 731  DVH--DGIYFRQLWRGIR--KRGSWQGEFWCRHKNGEVSPQWMVVNTVHDRQGTVTNYIA 786

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            +  DI+ QK   + I   A  D LT +PNR   ++RL   L  +  +      V+ ID+D
Sbjct: 787  LFTDISAQKSQEQRIQHIAHHDALTNLPNRLLCMERLILALQQAHRNGR-HVAVIFIDLD 845

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K IND LG  VGD VLV+   R+   ++  D ++RL G+ F IIL    +S +I +  
Sbjct: 846  HFKNINDSLGHHVGDCVLVTAANRLSMGVRDGDTVSRLGGDEFVIILADIEDSHQIEEIM 905

Query: 635  -IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
               +   +  P +    E+  + SIG + +    +    +L+NA+ AMY AK  G N+  
Sbjct: 906  KHRLLPLMRQPYDAGGYELHCSCSIGISIFPEDGLDKDTLLRNADTAMYRAKEVGRNNYH 965

Query: 694  SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             +    +S    R+ I+  L   +E +EL L Y P + L   +  GLEAL++W HP  G 
Sbjct: 966  FYTEELNSRAMQRLSIETSLRKGIERNELLLHYQPKLDLHTGKPYGLEALLRWQHPDHGM 1025

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            IS  EF+ IAEE  +I  I   ++    R +  W     M  I + +N+++    D    
Sbjct: 1026 ISPMEFIPIAEETGLIIPIGKQVIRNACRQLSRW-SSVGMSHICLSLNVSAVQFRDRRFV 1084

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            E +  L+ +   SP RI+L  +E+++M +  R+  ++  L+  G   ++DDFGT  S L+
Sbjct: 1085 EDLVQLVREEGVSPHRIELELTETMLMEDAVRTIRVMETLKDEGFLFSIDDFGTGYSSLN 1144

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL   P D +K + S + G       +AI+++II +   ++  +IA+ +  E + + L  
Sbjct: 1145 YLHRFPIDCLKIDRSFIRGMLERPADLAIIKAIIGLGHTLDMQVIAEGVEKEDEYRALRA 1204

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKER 956
             GCD IQ   VA PL    + + L  R
Sbjct: 1205 AGCDGIQGYFVARPLTPEQVPEWLLAR 1231


>gi|91203280|emb|CAJ72919.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 857

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 147/555 (26%), Positives = 264/555 (47%), Gaps = 11/555 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI--NDRDNF 464
            SLAV  S  ++   D         P    + G     + G   N +  I          
Sbjct: 302 LSLAVEQSPAMIAVTDTDGRIDYINPKFCKVTGFEPEEVLGK--NLIDIIQPGGESLSMA 359

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L   +  + G  +  F  R    +  W  + +  + ++ G I  Y+ I  DITE K+
Sbjct: 360 DKTLWKAITSK-GEWKEAFSSRKKHGELFWTSLSLSAIKSNEGFISHYLAIMEDITEHKQ 418

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E I   A+ D+LT +PNR+ F DRL   +  +     +   V  IDID++KK+ND LG
Sbjct: 419 AEERIHYLAYYDSLTALPNRELFHDRLNMAIIHAHRKQQM-LAVAFIDIDRFKKVNDTLG 477

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + GD +L  +  R+   ++  D ++R  G+ F ++L   +      D    + K +  P
Sbjct: 478 HSTGDRLLKIIADRLKSCIREEDTVSRQGGDEFVLLLTEISRMEDANDVTQRILKKLKEP 537

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           + + + ++ ++ASIG A +     T+  +LKNA+ AMY +K  G ++   +  +      
Sbjct: 538 VIIDDHDLCISASIGIALYPGDGTTAEALLKNADSAMYISKESGRDNYHFYSSTVQEKAY 597

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +  +  L  A+EN EL L Y P + +    +VG+EAL++W HPK G IS +EF+ +AE
Sbjct: 598 EQLLEEMYLRRALENRELVLYYQPQVNIATGRLVGMEALLRWKHPKKGLISPAEFIPLAE 657

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  I+ ++L    +  ++W+     P + I +NI+        L + +  ++  T 
Sbjct: 658 DTGQIVPIDFWVLHTACKQNMAWQRAGL-PSVPIAVNISGHTFGRENLIDFVNNVLHDTR 716

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SP  + L  +E + + N + +   L +L+ +GI +T+DDFGT  S LSYL   P   +K
Sbjct: 717 MSPDALDLEITEGIAIQNLQTTIYKLNKLKSLGIQITIDDFGTGFSSLSYLSKFPIQKLK 776

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
              + +    +     AI++++I MAK+++ T+IA+ +  +   + L  + CD  Q    
Sbjct: 777 IGMTFIHNLHKDPTNSAIVKAVIAMAKSLQLTVIAEGVETDEQFEFLQGLQCDEFQGYLC 836

Query: 941 ASPLGFNSILKLLKE 955
           +  +    + + L +
Sbjct: 837 SKAVTSEEMGRFLAK 851



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 51/192 (26%), Gaps = 45/192 (23%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +++ +        +    +R    V    DI++  D           +  + G    
Sbjct: 117 ARTMRYSMERKQIELELQDGKQRYKRLVEILPDIIYRIDANGYFTFINEAV-QVFGYEPD 175

Query: 444 SMHGPIRNWLPYIHINDRDNF-------------------RTILDSFVGYRRGRLQYEFR 484
            + G   ++   IH +D                         + D     +R     + R
Sbjct: 176 ELIGK--HFSELIHPDDLKKVSRSEVLSEYSGKTSDYKTTPKLFDERRTGQRKTTGLQIR 233

Query: 485 VRAADNQFHWMIIRIRPMSNS----------------------NGDILRYIGIANDITEQ 522
           V++      +M   I+ +                         +   +  +G+  DIT  
Sbjct: 234 VKSKK-SPEYMEYTIQIIKWPKKHEKIIEVAATGHYDSDIMKNDKRFVGTVGVIRDITGS 292

Query: 523 KKSLEGILCNAF 534
           K + E I   + 
Sbjct: 293 KHAEEMICTLSL 304


>gi|218886625|ref|YP_002435946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757579|gb|ACL08478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 896

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 141/627 (22%), Positives = 257/627 (40%), Gaps = 16/627 (2%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G        P                    + ++    L   L L    +   V+ H ++
Sbjct: 268 GANPGSGFCPTGGFCMEGICTAAH---GPHEAEVSVEPLPLSL-LRGKGMTALVVVHDIS 323

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               ++      ER       + + +   D     V   P   TI G  +    G     
Sbjct: 324 GRRTAERQARLFER---VFRNALEGICITDPEGIIVAVNPAFTTITGYPADDAVGQSPRL 380

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L   H +D   +  +  + V    GR + E   R  + + +   + I  +    G    Y
Sbjct: 381 LKS-HHHDSAFYEDMWRALVEE--GRWEDEIWNRRRNGEVYPEWLSISAIPGPTGRTEYY 437

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +DITE K     I   A  D LTG+PNR    DRL   ++ +  +D  +  V+ +D
Sbjct: 438 VAVFHDITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDR-KVAVLSVD 496

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K++ND LG  VGD  L     ++ ++++  D LAR+ G+ F ++L         A 
Sbjct: 497 LDNFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQ 556

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +      P+ + E E+ V AS+G A +         +++NA++AM  AK +G    
Sbjct: 557 VAERLLARFTDPVRVQEHELFVGASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRY 616

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++     R+ ++ DL  A+   ++   Y P + L    I G+EAL +W      
Sbjct: 617 HLFTPAMNDRAVRRLSLEGDLHRALAAGDITAHYQPRVDLNTGLITGMEALARWIRADGS 676

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
               +EF+ +AE   +I  +   ML        +  D      + + +N++        L
Sbjct: 677 QEHPAEFIPLAESTGLIVPLGEHMLRLACAKTRALCDA-GHADLHVAVNLSVHQFRHRNL 735

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  ++++T   P  ++L  +ES ++ + + +   L +L ++GI+L++DDFGT  S L
Sbjct: 736 VGMVADVLAETGLPPHLLELEITESTIVTDVDHTIRKLNQLAEMGIALSVDDFGTGYSSL 795

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P  ++K + S +          AI  +II MA  +   ++A+ +     +  L 
Sbjct: 796 YQLKNLPLTSLKIDRSFIRDIPDDPNDAAIAATIITMADRLGLRVVAEGVETPEQLNFLL 855

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
             GC  +Q    + PL  +    LL  
Sbjct: 856 LEGCHEVQGFLFSRPLPPDEFTALLAR 882


>gi|291614988|ref|YP_003525145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585100|gb|ADE12758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 935

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 152/669 (22%), Positives = 277/669 (41%), Gaps = 16/669 (2%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
              A L           A   R  +  + +       + G        LL        + 
Sbjct: 278 LGWASLVRQDVSQAFAPAHQLRQRILMMGVALGLLFAWLGW-------LLAEHIARPIVR 330

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                  +        +     G  V  +      ++ ++       +         +  
Sbjct: 331 ISRAANKVATGDLAYDVPEQQGGDEVAQLSRAIHAMVSNLTREIRQRRKAEESMRLSAAV 390

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              + + +   D   + V        I G     + G     L       ++ +R    +
Sbjct: 391 FANNTEAIMITDADHNIVMINRAFTEINGYTEAEVLGKNPRLLAS-GKQGKEFYRDFYAA 449

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              + +   + E   +  + +     + +  + +    I  YI I  DITE+KK  E I 
Sbjct: 450 L--HNKDAWRGEIWNKRKNGEIFPEWVTVSVIRDQQAAITHYIAIYMDITERKKEEERIQ 507

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR    DRL   L L+      +  VM ID+D +K IND LG  VGD 
Sbjct: 508 YLANYDVLTGLPNRYLLNDRLEQGLSLAQRHQ-TKVAVMFIDLDHFKNINDSLGHDVGDA 566

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +++R+   L+  D +AR  G+ F  +L   N+  ++      M  S+     + E 
Sbjct: 567 LLKMVSQRLKGCLRRSDTIARQGGDEFVALLGDLNSEDEVTFVCEKMLHSLREEFEVAEY 626

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIK 708
            ++V  SIG + +     TS ++L+NA+LAMY AK  G N  E ++         R+ ++
Sbjct: 627 HLSVGTSIGVSIYPDDGETSVQLLRNADLAMYRAKDAGRNRFEYYKPEMNTKALQRLHLE 686

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+  ++L +   P + +    +VGLEAL++W HP+ G +S +EF+ +AEE  +I 
Sbjct: 687 NALRSAIAENQLMVYCQPKVNVNSGAVVGLEALLRWKHPQLGFVSPAEFIPVAEESGLIN 746

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L + A     W+       + I +N++++     +L E +Q ++  T   P  I
Sbjct: 747 EIGDWVLRQTALQQRLWQSHGYAI-VPIAVNLSARQCGQKDLVEKIQTIVRDTGLPPQFI 805

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   +ES++M        L+ +L   G SL LDDFGT  S LS L  +P  T+K + S +
Sbjct: 806 EFELTESMLMDMGVNCLELMNKLSSAGFSLALDDFGTGYSSLSRLKLLPVKTLKIDQSFV 865

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 E    I+ +   +A  +E  ++A+ +  +  ++ +  + C+  Q    + P+  
Sbjct: 866 RDIATDENDEIIVNATAVLAHAMEMKVVAEGVETQQQLEFIRDLQCEEYQGYLFSRPVPP 925

Query: 947 NSILKLLKE 955
           +   + L++
Sbjct: 926 DEAEQFLRQ 934


>gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 711

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 161/638 (25%), Positives = 287/638 (44%), Gaps = 34/638 (5%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIV--------ILIGFTVIQHVLATGYFSQGI 400
              +   +  T + D D ++ A   G    V        +      +          + +
Sbjct: 72  CGKLVPILMATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMVRASDITEQLEEL 131

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                R   A   +    W+WD+  + +  +  +  +L L  G      R ++  +   +
Sbjct: 132 QKSESRLGNAQRIARLGNWEWDLKSNEIYWSEQLYHMLWLRRGVAKPSFRGFISRLPHGE 191

Query: 461 RDNFRTILDSFV----GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           R +F   +          +RG   +   +  AD     +  +     + NG      G  
Sbjct: 192 RKDFMGWIQGLRHGAKEEQRGGWNHS--LNQADGSRLNVQHQAEVFYDENGAAKVVSGTV 249

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE  ++ + IL  A  D+LTG+ NR +F  R+   ++ +    +L   V+ +D+D +
Sbjct: 250 VDVTELTQAQDQILQLAHFDSLTGLANRNAFRKRVELAMERAKQYGHL-GAVLFLDLDNF 308

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA--------------RLSGNRFGIILI 622
           K+IND LG ++GD +L  + RR+ ++++  D +               RL G+ F ++L 
Sbjct: 309 KRINDTLGHSIGDQLLQEVARRLTDIVRGSDSICGTNFNHAIDDNLISRLGGDEFTVLLP 368

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                      A  +  SI   INL   +I VT SIG A +         +LKNA+ AMY
Sbjct: 369 EIGKIKDAEHAARRVLNSIGDIINLSGHDIVVTPSIGIAIFPHHGENVDSLLKNADAAMY 428

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           + K  G N  E F  S     +  ++ +  L  A++N EL + Y P I +    I+G EA
Sbjct: 429 YVKRAGKNDYELFVNSMNVVAKRRLELESFLRHAIDNKELSVNYQPQIDIPTGRIIGAEA 488

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+  + G +S  EF+ IAEE  +I  I  ++L    R +  WRD    P I I +NI
Sbjct: 489 LLRWNSAELGMVSPVEFIPIAEETGLISPIGEWVLREACRQVKEWRDDGL-PEIQIAVNI 547

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +      L + +  ++ +T      ++L  +E+++M + E +   L +L+ +GI+L +
Sbjct: 548 SVQQFAKQSLDKLVSKVLLETGLPVHCLELEITENMLMDDVEGAVETLHKLKDLGINLAI 607

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P D +K + S +T   +     A+ ++II MA N+  T+IA+ +
Sbjct: 608 DDFGTGYSSLSYLKRFPIDKLKIDRSFITYVTTEPSDAAVTQAIISMAHNLGLTVIAEGV 667

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                ++ L +  C+ +Q  + + PL  + +  LL+  
Sbjct: 668 EEASQLEFLRQHHCEEMQGYYFSRPLIASDMEALLRSH 705


>gi|289628325|ref|ZP_06461279.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            aesculi str. NCPPB3681]
 gi|289650123|ref|ZP_06481466.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            aesculi str. 2250]
 gi|330869001|gb|EGH03710.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. aesculi str. 0893_23]
          Length = 1250

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 267/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 682  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 741  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 798

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 799  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 857

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 858  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 917

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 918  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 977

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 978  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1096

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1097 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1217 EHGCDEVQGYLFGRPMPASQFEA 1239



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 592

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 593 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 650

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 651 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 694



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 400 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 459

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 460 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 519

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 520 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 560


>gi|71907605|ref|YP_285192.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71847226|gb|AAZ46722.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 963

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 158/578 (27%), Positives = 282/578 (48%), Gaps = 12/578 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           Q VL +    + I     R       + +  W  D    RV   +     ILG    +++
Sbjct: 123 QQVLVSPERIEQIDQGVARFFQLASNTPECYWLTDAATQRVTYVSAGYEKILGRHVEALY 182

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               +WL Y+H  D+D     + ++   R G L  +FRVR   +   W+  R  P+ +  
Sbjct: 183 ADSHDWLNYVHPEDQDRVLAAVRTY---RLGGLDAKFRVRRPGDVQCWLHARNFPVRDEE 239

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+I+   G+A DIT            A  D LT +PN+  F D++  ++ LS    +L  
Sbjct: 240 GNIVSVGGVATDITSLLADQWKSPYFAHFDALTALPNQLMFYDQVKRMIALSKR-KDLPL 298

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           ++MV+DID+++++N  LG A GD++L  +  R+   L+  DIL RL  + FGI+L    +
Sbjct: 299 SLMVVDIDRFRQLNQTLGHASGDELLRQVAGRLSGSLRESDILGRLGTDVFGILLPDVAD 358

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           + + +  A  +  ++ MP+ +  +++  TA +G   +        E++ NA +A  HAK+
Sbjct: 359 THQASIVARRIIDTMIMPVRVAGQDVFATAGVGIVFYPQDGNDVHELVTNAGIAGRHAKN 418

Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + +         DR+ ++ DL  A   +E  L Y P     D  I G+EAL++W
Sbjct: 419 LGRNSYQYYFPGMHEGARDRMFLEIDLRHATLRNEFVLYYQPKASCADGRITGVEALLRW 478

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G +S  +F+ + EE  +I  +  ++LE   R  + W+      P  + +N++++ 
Sbjct: 479 QHPERGIVSPDQFIPLLEETGLIVQVGRWVLEEACRQAVEWQAAGLNIP-SVSVNLSARQ 537

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    L   + A + KT  + + + L  +ES++M N + +   L  L+K+G++++LDDFG
Sbjct: 538 LQAETLLTDVAATLEKTGLNAACLDLEITESMLMDNADMAIQTLSALKKMGVTISLDDFG 597

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P D +K + S +          +I R++I MA +++  ++A+ +    
Sbjct: 598 TGYSSLAYLKRFPLDAIKVDRSFVQDIAADSDDASITRAVITMAHHLKLKVVAEGVETPE 657

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL--KERFP 958
            +  L    CD IQ    + P+  + + +LL    R P
Sbjct: 658 QLALLISHQCDVIQGYFFSRPMPASGMTELLVSDRRLP 695


>gi|298504600|gb|ADI83323.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAC
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 792

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 160/604 (26%), Positives = 281/604 (46%), Gaps = 17/604 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R  +  +    V  +V         +++ + A     Q +         A+  S + +  
Sbjct: 163 RDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLV----FKRAIESSVNGITI 218

Query: 421 WDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRR 476
            D        +   P    + G A   + G    +L     +DRD      L   +  RR
Sbjct: 219 TDATNGENLIIYVNPAFERMTGYAGHEVLGKNPRFLRG---DDRDQVELRKLAMALEERR 275

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
               +  R    D       + + P+ + +G +  YIGI NDI++Q++  E ++  A  D
Sbjct: 276 EGY-FVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQRRYEEQLVYQATHD 334

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR    DRL   L L +        VM +D+D +KKIND LG  VGD +L ++ 
Sbjct: 335 PLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVA 394

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+   ++  D ++RL G+ + +IL +      +   A  +    + P  L+  E+ +TA
Sbjct: 395 NRLRNCVRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITA 454

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714
           SIG   + S   T   +LKNA+ AMYHAK +G N+ + +   +++   +R+ ++  L  A
Sbjct: 455 SIGITLFPSDGDTVDALLKNADAAMYHAKEQGKNNYQFYSEEMNTRVFERMALETSLHRA 514

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y P + L    I G+EAL++W+HP+ G +  + F+ +AEE  +I  I  ++
Sbjct: 515 IRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPLAEETGLIVPIGEWV 574

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L        +W+D    PP+ + +N++++      L + +   +++T   P  ++L  +E
Sbjct: 575 LRTACAQNKAWQDAGL-PPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTE 633

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S++M   E+S  +L  L  +GI + +DDFGT  S L YL   P   +K + S +      
Sbjct: 634 SLLMEQAEQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASD 693

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                ++R+II MA  +    + + +     I  L R GC+ +Q  + + PL      +L
Sbjct: 694 PDDAILVRTIITMAHGLGMKTVGEGVESLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEEL 753

Query: 953 LKER 956
           L+E 
Sbjct: 754 LREE 757



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 7/202 (3%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           I     +        I   + I      L MA+  ++    +       +  + ++    
Sbjct: 6   ISALHYRLPSPVRQFIV-LLSIIFLIEMLLMAVLPQVTGREV-EFKDALVDSMGLVTVAA 63

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                       +   +   R+ + +    D V  +       +  P    + G      
Sbjct: 64  PFLWAFIVRPLRRTAVAAVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEA 123

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     +  +   D   FR  + +  G+   +L YE      D       + +  +   
Sbjct: 124 AGMA---IDCLLSADGGYFRFAVQASGGHGTRQLAYELEGIRRDGSRFVADLSVSRIVFE 180

Query: 506 NGDILRYIGIANDITEQKKSLE 527
           +      IGI  DIT +K+  +
Sbjct: 181 DHRA--VIGIVRDITARKRDEQ 200


>gi|172036792|ref|YP_001803293.1| hypothetical protein cce_1877 [Cyanothece sp. ATCC 51142]
 gi|171698246|gb|ACB51227.1| hypothetical protein cce_1877 [Cyanothece sp. ATCC 51142]
          Length = 699

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 155/586 (26%), Positives = 276/586 (47%), Gaps = 16/586 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++  L      Q +    +  S  +   GD V   DI        P    + G      
Sbjct: 114 TLEIALYKHEIKQQLIEQKQWLSTILNSVGDGVLTTDINHQITYLNPMAEQLTGWTLSEA 173

Query: 446 HGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G         I+     +  + ++  +   +   L     +   D Q   +     P+ 
Sbjct: 174 IGKPVTEVFKLINETTHQSLPSPIEQVLENGQMLTLPSHTLLVKKDGQAIAIGDNAAPIY 233

Query: 504 NSN---------GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                             + +  DITE K + + +   AF D+LT +PNR+ F +RL   
Sbjct: 234 EYKQTTSLSHNGDQCTGVVLVFRDITEYKLTTQKLHRQAFYDSLTNLPNRRWFQERLIDA 293

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++    + N    V+ +D+D++K IND LG  +GD +L  ++RR+  LL+  D +AR  G
Sbjct: 294 IERVKRNSNYLFAVLFLDLDRFKVINDSLGHQMGDRLLNEVSRRLTHLLRSIDTVARFGG 353

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I+L   ++       A  +  S+  P  +  +E+   +SIG    ++  ++   ++
Sbjct: 354 DEFAILLEDIHSRDDAIHVAQRINDSLNSPFIIDGKEVFTNSSIGIVLSSNGYLSMDNLI 413

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A++AMY AK +G      F    +        ++ DL  A+E  EL L Y PI  L  
Sbjct: 414 RDADIAMYRAKAKGRACYAIFDPVVAQEIISASRLENDLKGAIEKEELTLYYQPIFDLET 473

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I G+EAL++W HP+ G IS   F+ IAEE   I AI+ ++LE     +  W    +  
Sbjct: 474 QMIQGVEALVRWQHPQNGLISPQFFIPIAEETGYILAIDNWVLETACHQMKQWLTLGSNC 533

Query: 793 PI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + INI+S   L   L + ++ ++S T  +PS I L  +E+ ++ +P+ + ++L +L
Sbjct: 534 QFSKVSINISSYQCLQKNLTQKIRKILSTTGLNPSNITLEITETALIQDPDSAIVILNQL 593

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNI 909
           + +GI L+LDDFGT  S LSYL Y P DT+K + S ++  ++ +    I+++II + +N+
Sbjct: 594 KDLGIILSLDDFGTGYSSLSYLHYFPVDTLKIDRSFISNLSKNKEGLEIVKTIINLGRNL 653

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              I+A+ I  +  +K L ++ C Y Q    + PL  + + +L+  
Sbjct: 654 NMDIVAEGIETDEQLKLLKQLNCQYGQGYLFSKPLAVDDMNQLINS 699


>gi|237653347|ref|YP_002889661.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237624594|gb|ACR01284.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 790

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 166/586 (28%), Positives = 272/586 (46%), Gaps = 13/586 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V L        +           ++    +     + + +   D     +   P  + I 
Sbjct: 209 VSLTVSKAHADLQEHAAALGRAEAELRLYATVFTNASEGMLITDAHSRIIAANPAFSRIT 268

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   + G     L      D   +R +  +     RG+ Q E   R  D   +   + 
Sbjct: 269 GYSPAEVAGRSPALLNS-GRQDAGFYRRMWSTLAS--RGKWQGELWNRRRDGSIYPEWLS 325

Query: 499 IRPMSNS----NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           I  +       +G    YIGI +DITE+K++   IL  A  D LT +PNR    DRL+  
Sbjct: 326 ITAVPGEGEGADGQPCNYIGIFSDITERKEAEARILHLAHHDPLTNLPNRALLNDRLSQS 385

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +  D      V+++D+D++K IND LG   GD +L+ +  R   +L+  D LARLSG
Sbjct: 386 LLQARRDGRG-AAVLLLDLDRFKTINDTLGHERGDSLLLEICARCRRVLRDTDTLARLSG 444

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I+L     +   AD A  +  +IA+P  L E EI++TASIG A +       S +L
Sbjct: 445 DEFVIVLPDATTADVSADTARRILDAIALPCRLGEHEISITASIGIALFPRDGGDESTLL 504

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +NA+ AM+ AK  G N  E +      S   R++++  L  A E  EL L Y P +   D
Sbjct: 505 RNADAAMHRAKEAGRNGFEFYTEDMNTSSLGRLLLEHQLRGAAERGELLLHYQPKVSAAD 564

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP+ G ++  +F+ +AEE  +I  I  ++LE   R   +W D     
Sbjct: 565 GRLGGFEALLRWQHPELGMVAPGQFIPLAEESGLIVPIGQWVLEETCRQQRAWLDAGFDV 624

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P  + +N+++  L   ++   + A I     +P  I+L  +E+++M + +R+   L RLR
Sbjct: 625 P-PLAVNLSAHQLAQPDIVATVAAAIECHRLAPGLIELELTETMLMRDVDRTIRTLVRLR 683

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S L+YL   P + +K + S ++          I  +I+ MA ++ 
Sbjct: 684 EMGVRLAIDDFGTGYSSLNYLRQFPVNALKIDRSFVSDIGSDGAEGKIAAAIVGMAHSLG 743

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +A+ +  E     L   GC  +Q   +A P     I + L  R
Sbjct: 744 LDAVAEGVESEAQRAFLQMHGCHQLQGFLIARPAPAREIERFLSRR 789


>gi|323524751|ref|YP_004226904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Burkholderia sp. CCGE1001]
 gi|323381753|gb|ADX53844.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. CCGE1001]
          Length = 1036

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 147/556 (26%), Positives = 268/556 (48%), Gaps = 14/556 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G     + G     L     +DRD 
Sbjct: 477  QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDPAEVMGHDCRVLQR---DDRDQ 533

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ N+ G I  +IG+ ND+T+ 
Sbjct: 534  EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNAEGVITHHIGVINDVTDL 592

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ +D+D +K +ND 
Sbjct: 593  MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFMDLDGFKNVNDS 651

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SI+
Sbjct: 652  LGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRVSIS 711

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++     S
Sbjct: 712  EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771

Query: 703  D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ +++ L  A+ +++  L Y P + +   +IVG EAL++W  P+ G +  S F+ +
Sbjct: 772  AGARLALEQRLRRALRDNQFLLHYQPQVDIHTGQIVGTEALVRWSDPEAGLVPPSSFIPV 831

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W++   +PP  + +N++++     ++ + +  ++ +
Sbjct: 832  AEESGLIGPLSEWVLREACRQNKAWQN-LGLPPARVSVNLSARVFQQRDIAKLVMQVLDE 890

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 891  TGLEPQYLELELTESAIMRNAEEAVSMLNELSALGIGLAIDDFGTGYSSLSYLKRFPVDR 950

Query: 881  VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 951  LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010

Query: 939  HVASPLGFNSILKLLK 954
            + A PL   +I +L+K
Sbjct: 1011 YFAKPLSTEAISELMK 1026



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L  +     F +   V              +     +      ++  D+    +      
Sbjct: 322 LNFLGRAAFFVLADDVTEQINAEAEAQRSNQMLETVIDNIPQRIFWKDLESRYLGCNMAF 381

Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           A   GL+    + G      P R +   ++ +DR+  +         R  ++ +E  V  
Sbjct: 382 ARDAGLSYPEQVVGKSDADMPWRAFAELLNAHDREVVQ--------TRVPKMNFEVDVVI 433

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                   +    P ++S+G ++  +G   DITE+K++   +   + 
Sbjct: 434 G-GVHRTTVTSKLPFTDSDGRVIGVLGSYTDITERKRADLALRLQSR 479


>gi|237654605|ref|YP_002890919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237625852|gb|ACR02542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 855

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 150/582 (25%), Positives = 282/582 (48%), Gaps = 13/582 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGER-QSLA---VLGSGDIVWDWDIVRDRVTTTPD 433
           I+  +    +  +           S  +R   LA   +  S + V   D     ++  P 
Sbjct: 273 ILSGMELAYVHELHDALRARDLALSASQRDLYLAEKVIESSLEGVMVTDAHARILSVNPA 332

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              + G A   + G   + L          +  + D  +    G+ Q E   R    + +
Sbjct: 333 FTRMTGYAPEEVVGLNPSVLNS-GRQSPAFYARMWDGLL--GDGQWQGEVWNRRKTGEVY 389

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             ++ I  + +  G +  Y  +  DI+  K++   I   A+ D LTG+PNR+   DRL  
Sbjct: 390 PQLLHITAIRDREGVLTHYAALFTDISRLKETEARIRDLAYYDPLTGLPNRRLLDDRLQV 449

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L  +A     R  VM +D+D++K+IND LG AVGD +LV +  R+   L+  D +AR+ 
Sbjct: 450 ELAHAARL-RCRLAVMFVDLDRFKRINDSLGHAVGDKLLVEIAARLRASLRDDDTVARMG 508

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L + +   + A  A  M   +  P+N+  RE+ VT S+G A +      +  +
Sbjct: 509 GDEFLVVLNNLSGPDEAATMARRMVAELRRPVNVEGRELVVTTSVGVAVYPDDSRDADTL 568

Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +K+A++AMY AK  G N  + F   +++   +R+ ++  L  A+   EL L + P+++  
Sbjct: 569 VKHADVAMYRAKDEGRNSFQLFEPAMNARSLERLALETALHRALPRDELQLYFQPVMKAE 628

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             E+V +EAL++W HP  G +S ++F+ +AE+  +I  I  ++L         W +    
Sbjct: 629 GGELVAVEALLRWRHPDLGLVSPADFIPLAEDTGLIVPIGEWVLRSACEHHRRWCEAGGA 688

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P+ +++NI+++   +      + +++++T  +P  + L  +ES++M + +R+   L  L
Sbjct: 689 -PLHMMVNISARQFREEGFAAMVGSVLAETGMTPGDLTLELTESMLMDDTDRALARLDHL 747

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909
           R +G+ L +DDFGT  S L+YL   P D +K +   + G     +  A++ +I+ +  ++
Sbjct: 748 RALGVCLAIDDFGTGYSSLAYLKRFPIDELKIDRLFVRGIDRNTRDAALVSAIVSLGHSL 807

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              ++A+ +     +  L R GCD  Q  H + PL +   +K
Sbjct: 808 GLRVVAEGVETAAHLDVLRRQGCDLAQGFHFSPPLPWEEFVK 849


>gi|118443039|ref|YP_878420.1| diguanylate cyclase/phosphodiesterase [Clostridium novyi NT]
 gi|118133495|gb|ABK60539.1| Diguanylate cyclase/phosphodiesterase domain 2 [Clostridium novyi
           NT]
          Length = 961

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 152/569 (26%), Positives = 273/569 (47%), Gaps = 7/569 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIR 450
           A     + +    ++  L V GS D +W+WDI  D++  +  +  I G +    ++   R
Sbjct: 390 ALEKSKETLEKGRQKYKLVVDGSNDAIWEWDIKEDKLFMSNKLNIIKGSSKYTDINENKR 449

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +   I   D           +      +  E R+    N  +W  I+ + + +  G++L
Sbjct: 450 YFSKIIKEEDYKKIIEKFKEILYKNENYIDVECRILDEFNYENWFNIKGKALRDGEGNVL 509

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           +  G   DIT++K++++ I   A+ D+LTG+PNR ++   +  I+     D+ +   +M 
Sbjct: 510 KIAGSITDITDRKEAIKKIEYLAYNDSLTGLPNRVAYSRDIYGIIQNVKKDNKI-GAIMF 568

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DID +K +ND LG   G+++L  + +RI  +L   +   RL G+ F I+     N   I
Sbjct: 569 LDIDNFKNVNDTLGHDYGNELLKKVNKRISNILTEDERFYRLGGDEFIIVQCGSYNEKDI 628

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  + K  +    +    I  T S+G + +       S +LK A+ AMY AK+ G +
Sbjct: 629 ELLADNILKLFSKSFIVKNEHIYTTVSLGISFFPKDSCDQSVLLKYADTAMYSAKNLGKS 688

Query: 691 HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +      +      ++E L  A+E  EL LV+ P +     EI G+E L++W+  K
Sbjct: 689 KYLIYNKEMSSNLIRRSQLEEGLRHAIERKELKLVFQPQVNANTGEIKGVEVLLRWNSEK 748

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           +G +S SEF++IAE+  +I +I  ++L         W+ +     I I +N++   L  +
Sbjct: 749 FGFVSPSEFIVIAEKSGLINSIGEWVLRESCLKRKQWQIENLK-DITISVNVSVIQLQQD 807

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E ++ ++ KT   P  ++L  +ESV+M + E +  +L  +R IG+ + LDDFGT  S
Sbjct: 808 DFIEKLKEILEKTKLPPECLELEITESVMMESKETNLDILNSIRDIGVKIALDDFGTGYS 867

Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P + +K + S +      +    I+  II +A  I   +IA+ +     +  
Sbjct: 868 SLSYLKMLPINKIKLDKSFIDTIHINKNDKFIVEGIIDLAHKIGLNVIAEGVELNEQLDV 927

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L    CD IQ  + + P+      +LLK+
Sbjct: 928 LCEANCDEIQGYYFSKPVEEFEFKELLKK 956


>gi|117925517|ref|YP_866134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
 gi|117609273|gb|ABK44728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
          Length = 1275

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 157/581 (27%), Positives = 271/581 (46%), Gaps = 15/581 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               +Q V       +G+        +    +G+ +   D   D     P    I+G    
Sbjct: 696  VGTLQDVTRRKMAEEGLVLA----KMIFDNAGEAIVITDAQGDITDVNPAYQRIMGYTRD 751

Query: 444  SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L    H  D   +  + +  +    G  Q E   R    +     + I  +
Sbjct: 752  EIVGQNPSILKSGRH--DEQFYEQMWNEMLSE--GHWQGEIWDRRKSGEIFPKWLTIDAI 807

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +  G I  ++G+  DIT+QK++ E +   A+ D LT +PNR  F DRL   + LSA   
Sbjct: 808  RDEQGVISNFVGLFMDITQQKETEEQLEKLAYYDPLTELPNRALFRDRLEQEMRLSAR-G 866

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 +  ID+D++K +ND LG   GDD+L+ +  RI   L+  D +ARL G+ F +IL 
Sbjct: 867  GKSLGLFFIDLDRFKYVNDSLGHDKGDDLLIQVAGRIKHHLRTSDTVARLGGDEFTVILP 926

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                +  +A  A A+ KS+     L   E+ +  SIG A           + K+A+ AMY
Sbjct: 927  GIEQTNDVARIAGAIVKSLGEVFVLQGHEVFIGGSIGIAMHPDDGEDYETLTKHADTAMY 986

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G    + F       +   +  +  L  AVE ++L L Y P + +    I G+EA
Sbjct: 987  RAKEEGRGTYKFFTSDMNEINGRRLSLERALRQAVECNQLTLHYQPKVDVKQCRITGMEA 1046

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++W+HP+ G +S  +F+ IAEE  +I  I  +++++   D       +   P+ + IN+
Sbjct: 1047 LVRWNHPEQGLVSPVDFIPIAEETGLIITIGEWVMQQACMDAKRLARSSRH-PLQVAINL 1105

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++K   D  L   ++  + ++  +P  +++  +ES+ MG+  R+   +G LR +G+ +++
Sbjct: 1106 SAKQFQDALLVAKLERSLQQSGLAPELLEVEITESLAMGDVNRTIEQIGELRALGVKVSI 1165

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S LSYL  +P + +K + S +          AI+ SI+ MA  +  +++A+ +
Sbjct: 1166 DDFGTGYSSLSYLKKLPLNALKIDKSFIQDLYLDSDDTAIVSSILSMASALGLSVVAEGV 1225

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
              +  I  L    C  IQ    + PL F +  K L +  P+
Sbjct: 1226 ENQAQIHFLCEKECPTIQGYFFSKPLPFEAFEKFLLDWDPV 1266



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++        + I  D E        +    W WD+ +D +  + ++  +LGL   + H 
Sbjct: 573 KYRAQQLKQLEQIHQDLENAQSV---AKIGSWHWDMQKDNLHWSKELVRLLGLEGDTSHA 629

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR-AADNQFHWMIIRIRPMSNSN 506
               +L  IH +DR      + +     + R + + R+      +   +        +S 
Sbjct: 630 SYSTYLELIHPDDRAKINRQMAAVTRGMQDRFEADHRIICHKSGELLHIHALGIVSRDSR 689

Query: 507 GDILRYIGIANDITEQKKSLE 527
           G   + +G   D+T +K + E
Sbjct: 690 GVPSQMVGTLQDVTRRKMAEE 710


>gi|237748475|ref|ZP_04578955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacter formigenes OXCC13]
 gi|229379837|gb|EEO29928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacter formigenes OXCC13]
          Length = 1021

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 274/580 (47%), Gaps = 15/580 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILG 439
               ++  ++    F+   F   E+  LA      S + +   D   + V        I G
Sbjct: 438  SQRLLLELMEDIDFALQHFEKEEQLQLAAQVFSQSSEAIMLLDSCSNIVMINRAFTHITG 497

Query: 440  LASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             +     G   R      H  DR+ + T+ +S    + GR Q E   R  +   +   + 
Sbjct: 498  YSEEEALGKNPRMLASGQH--DREFYSTMWESI--EKEGRWQGEIWNRRKNGSIYPEWLL 553

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            ++ M +S  ++  YIG   D+TE+K++ E +   A  D LTG+PNR     R    + L+
Sbjct: 554  VQTMRDSQNEVTHYIGTFTDLTERKETEERVQWLAHFDPLTGLPNRTLLHIRSNLAISLA 613

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                +    +M +D+D +K +ND LG  +GD++L     R+   ++  D ++RL G+ F 
Sbjct: 614  HRR-HEPLALMFLDLDNFKNVNDSLGHGIGDELLKQFAERLKNAVRDQDTISRLGGDEFV 672

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            ++L +  ++      A  +    A P ++   E+ +TASIG A + +       +  +A+
Sbjct: 673  LVLPN-TDTGGATSIAEKLLAIAAEPYHIDPHELNLTASIGIAMFPADGADFETLSCSAD 731

Query: 679  LAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIV 736
             AMY  K  G N+   F          M++ D  L  A+E ++  L+Y PI+ L     V
Sbjct: 732  TAMYRTKQNGRNNYCFFTAEMQAKSSRMLELDSALRRALERNQFTLLYQPIMSLNYGVNV 791

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            G EAL++W+HP+ G+IS  EF+ +AE    I  I  ++L  + + +  W D  N   + +
Sbjct: 792  GFEALLRWEHPQLGSISPEEFIPVAESNGQIIPIGEWILRSVVKQLKEWVDAGNDR-LMV 850

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N+++    D  L E +  ++ +    P  + L  +ESV M  PE + +++  L++ GI
Sbjct: 851  SVNLSAVQFRDRRLTEQIAEILKENDLDPKHLVLELTESVAMEKPESAIVIIDSLKERGI 910

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
             +++DDFGT  S L+YL      ++K +GS +       + +AI+ +I+ +AKN+  T I
Sbjct: 911  KVSIDDFGTGYSSLAYLKRFAAHSLKIDGSFIQNVPHDPENMAIVGAIVSLAKNLGITTI 970

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            A+ +     ++ L   GC  IQ  + + P+   +    L 
Sbjct: 971  AEGVENIKQLEFLKETGCTAIQGHYFSRPMTAAAASDFLA 1010



 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 8/66 (12%), Positives = 23/66 (34%)

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +++           E  +   +       +  R ++  +G     +    DITE+K++  
Sbjct: 18  INALKEGISDEFCEEKSLHRKNGDDAITEVHFRLVTKEDGTPDYLVVTVEDITERKRAEA 77

Query: 528 GILCNA 533
            +   +
Sbjct: 78  EVFRLS 83


>gi|262089630|gb|ACY24727.1| PAS-PAS-GGDEF-EAL domain protein [uncultured organism]
          Length = 838

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 153/578 (26%), Positives = 275/578 (47%), Gaps = 29/578 (5%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTT-------TPDIATILGLASGSMHGPIRNWLPY 455
              R    +  S D  W+ +     +         +     +LG     + G       +
Sbjct: 272 SEARFRSLIELSSDWYWEQNADLQFIEFEDPNNKSSYKRDEVLGKHLRELPGTALLSESW 331

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I  +D           V  R      E R  A + + +++ +   P  + NG    Y GI
Sbjct: 332 IEYDD----------LVAERNPFRDLELRRVADNGKAYFISLTGLPAFDENGKFRGYRGI 381

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT++K+S + I   A  D+LT +PNR  F   L   ++ +      +  V  ID+D+
Sbjct: 382 GRDITDRKRSEQHIHFLATHDSLTSLPNRFMFSQILNLAIESAHRYHR-KLAVFFIDLDR 440

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG   GD +L  +  R+ + L+  D++ RL G+ F I+L    N+ +IA  A 
Sbjct: 441 FKNINDTLGHEAGDFLLCEMAARLKQCLRASDVVGRLGGDEFVILLPEPENTEQIATVAQ 500

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +   PI++  +E  VTASIG   +         ++KNA++AMY AK  G N+ + +
Sbjct: 501 KILSASINPIDINGQECRVTASIGICVYPEDGKDEQTLMKNADIAMYRAKEEGKNNYQFY 560

Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                    +R+M++ +L +A+E +E +L Y     L   EI G+EAL++W HP+ G IS
Sbjct: 561 SPDIEARSLERLMLENNLRMALERNEFFLHYQAKRNLQTGEIAGVEALVRWQHPELGVIS 620

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AEE  +I  I  ++L+      ++W  Q   PP+ + +N++ +   D  L + 
Sbjct: 621 PAQFIPLAEETGLIVLIGRWVLKTACAQNVAWLKQGL-PPLCMAVNLSVRQFFDEHLIQD 679

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   +S++   P  +++  +E +VM + ER+  +L  ++ +G+ L +DDFG   S L+ +
Sbjct: 680 VADALSESGMQPELLEMEITEGMVMQDAERAIRILTAIKALGVRLAIDDFGVGYSSLAQI 739

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P DT+K + S +       +  AI  +II M + +  T+IA+ +  +     L    
Sbjct: 740 KRFPIDTLKVDSSFIRDIPQNREDRAITEAIIAMGRTLSLTVIAEGVETKEQETFLRDHN 799

Query: 932 CDYIQDSHVASPLGFNSILKLLKER------FPLVKNT 963
           CD  Q  + + P+     +  +K++      +P V +T
Sbjct: 800 CDQSQGYYFSKPISPEDFVSFMKKQAACTIVYPPVAST 837



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 3/149 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
                + I +   V +        S  +  +       V    D ++  D+    +    
Sbjct: 114 FNARDLNIELEKRVAERTTELSAISATLEQERNLMRTLVDAVPDSIFVKDLNSKFLLANN 173

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQ 491
            +A  +G +  ++ G   +   +       NF     + V      +  E      +   
Sbjct: 174 AVARGMGTSPENLIGK--DDFDFFPEEMAQNFFDDEQAIVRTGEALVNREELAVNKETGN 231

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             W +    P+ N  G+ +  +GI  DIT
Sbjct: 232 MRWFLTTKLPVRNDKGETVALVGIGRDIT 260



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           D+++  D     +     +  + G  ++  + G     L            +  D  V  
Sbjct: 3   DLIYAKDEKGRFIYVNLALVNMTGAESADDILGKTDFDLN---PPTAAQAYSDDDQLVMR 59

Query: 475 RRGRL--QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               L  + E        +  W      P+ +  G ++  IGI  DIT+ K++       
Sbjct: 60  SGQPLVGREELLENFKTGESRWHSTTKVPLRDDKGKVIGIIGITRDITQIKQAEFNARDL 119


>gi|39995582|ref|NP_951533.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982345|gb|AAR33806.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
          Length = 792

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 160/604 (26%), Positives = 281/604 (46%), Gaps = 17/604 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R  +  +    V  +V         +++ + A     Q +         A+  S + +  
Sbjct: 163 RDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLV----FKRAIESSVNGITI 218

Query: 421 WDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRR 476
            D        +   P    + G A   + G    +L     +DRD      L   +  RR
Sbjct: 219 TDATNGENLIIYVNPAFERMTGYAGHEVLGKNPRFLRG---DDRDQVELRKLAMALEERR 275

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
               +  R    D       + + P+ + +G +  YIGI NDI++Q++  E ++  A  D
Sbjct: 276 EGY-FVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQRRYEEQLVYQATHD 334

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR    DRL   L L +        VM +D+D +KKIND LG  VGD +L ++ 
Sbjct: 335 PLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVA 394

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+   ++  D ++RL G+ + +IL +      +   A  +    + P  L+  E+ +TA
Sbjct: 395 NRLRNCVRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITA 454

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714
           SIG   + S   T   +LKNA+ AMYHAK +G N+ + +   +++   +R+ ++  L  A
Sbjct: 455 SIGITLFPSDGDTVDALLKNADAAMYHAKEQGKNNYQFYSEEMNTRVFERMALETSLHRA 514

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y P + L    I G+EAL++W+HP+ G +  + F+ +AEE  +I  I  ++
Sbjct: 515 IRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPLAEETGLIVPIGEWV 574

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L        +W+D    PP+ + +N++++      L + +   +++T   P  ++L  +E
Sbjct: 575 LRTACAQNKAWQDAGL-PPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTE 633

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S++M   E+S  +L  L  +GI + +DDFGT  S L YL   P   +K + S +      
Sbjct: 634 SLLMERAEQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASD 693

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                ++R+II MA  +    + + +     I  L R GC+ +Q  + + PL      +L
Sbjct: 694 PDDAILVRTIITMAHGLGMKTVGEGVESLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEEL 753

Query: 953 LKER 956
           L+E 
Sbjct: 754 LREE 757



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 7/202 (3%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           I     +        I   + I      L MA+  ++    +       +  + ++    
Sbjct: 6   ISALHYRLPSPVRQFIV-LLSIIFLIEMLLMAVLPQVTGREV-EFKDALVDSMGLVTVAA 63

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                       +   +   R+ + +    D V  +       +  P    + G      
Sbjct: 64  PFLWAFIVRPLRRTAVAAVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEA 123

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     +  +   D   FR  + +  G+   +L YE      D       + +  +   
Sbjct: 124 AGMA---IDCLLSADGGYFRFAVQASGGHGTRQLAYELEGIRRDGSRFVADLSVSRIVFE 180

Query: 506 NGDILRYIGIANDITEQKKSLE 527
           +      IGI  DIT +K+  +
Sbjct: 181 DHRA--VIGIVRDITARKRDEQ 200


>gi|330505281|ref|YP_004382150.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919567|gb|AEB60398.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1244

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 153/559 (27%), Positives = 273/559 (48%), Gaps = 9/559 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +  + ++ +     + + V   D+ +           I G +     G     L   
Sbjct: 674  RQQMQEELQQAATVFESTAEGVLITDLEQRITAVNRAFTQITGYSEAEALGQRPTLLSS- 732

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D+  +  +  S      G  Q E   R  + + +   + I  + N +  I  ++G+ 
Sbjct: 733  GQHDKAFYAAMWHSLAAN--GHWQGEIWNRRKNGELYPEWLTISAVRNRDNQITHFVGVF 790

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F +RL   LD +  DD L   V+ +D+D++
Sbjct: 791  ADISSLKHAQARLDHQAHHDPLTGLPNRLLFENRLRGALDGTRADDQL-GAVLFLDLDRF 849

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K+IND LG  VGD +L ++  R+   L+  D +ARL G+ F I+L   +        A  
Sbjct: 850  KQINDSLGHPVGDQLLKAIAERLRLQLRDIDTVARLGGDEFIILLPGLHQPQDAEQIAQK 909

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            + +       L   E  ++ASIG + + +     + ++KNA+ AMY +K +G N  E + 
Sbjct: 910  LLECFGASFQLDNHEFFISASIGISLYPTDGQDVATLVKNADAAMYQSKAKGRNRCEFYT 969

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             S     ++R+ ++++L  A+E +EL L Y P   L  + +VG EAL++W HP +G+I  
Sbjct: 970  RSLTFQVNERMAMEQELRRALERNELCLYYQPKFCLRSQSLVGAEALVRWPHPLFGDIPP 1029

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AEE  +I  +  ++LE+  R +  W++        + +N+A   L    L   +
Sbjct: 1030 DRFIPVAEESGLILPLGDWVLEQACRQLQEWQESGRGFGA-LSVNLAGAQLHQPSLLPRI 1088

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             AL+ +   +P  ++L  +E+ +M   E +  +L RL+++G+ L +DDFGT  S LSYL 
Sbjct: 1089 GALLQRYNLAPELLQLEITENFIMNQAEEALDILHRLKQLGVQLAIDDFGTGYSSLSYLK 1148

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G       +AI R+II +  +++ T+IA+ +  +     L   GC
Sbjct: 1149 RLPLDVLKIDQSFVRGLPDDPHDLAITRAIIALGNSMQLTVIAEGVETKAQELCLAAEGC 1208

Query: 933  DYIQDSHVASPLGFNSILK 951
              IQ   V+ PL  ++  +
Sbjct: 1209 LQIQGYVVSRPLSADAFAR 1227



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 369 PALVGGLVLIVILIGF--TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR- 425
           PA++G L +I  ++     + + +       Q + S  +     V     I W+ +    
Sbjct: 273 PAVLGLLAIIAAILSINRRLKREMRNREALEQELRSREQHFRDMVESLCAITWETESSGL 332

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG--RLQYEF 483
                +P    +LG            W  ++H +D       L   +           E+
Sbjct: 333 TYTYVSPHAEKLLGYPLHEWL-EPGFWQRHLHPDDHQR---TLRDCLEQSSAGKDHALEY 388

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           R+ AAD +  W+   +  +   +  ++R  G+  DI+E K++ + +  
Sbjct: 389 RLLAADGRIVWVRDIVTLLQRGDQQVIR--GLMIDISEAKQTEQALRQ 434



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 55/185 (29%), Gaps = 22/185 (11%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
               T  +            LV++V  I               Q +    E+ + A   S
Sbjct: 519 GSLFTGLISASPYILDNTPALVMVVRDIS--------QLKSTQQQLQISEEKFAKAFHAS 570

Query: 415 GDIVWDWDI-VRDRVTTTPDIATILGLA----SGSMHGPIRNWLPYIHINDRDNFRTILD 469
            D +    +     +      + I G +           +  W       DR+N    + 
Sbjct: 571 PDGLLITRLRDGRLIEANEGFSHITGHSFDQNGEQSTLSLGIWAD---PKDRENMVQCIR 627

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                R         VR    Q     +  +P+ + NG+    + IA DITE+++  E +
Sbjct: 628 EHGSVR----DMIAPVRTKSGQLRLCELSAQPL-SINGE-ECLLTIARDITERQQMQEEL 681

Query: 530 LCNAF 534
              A 
Sbjct: 682 QQAAT 686



 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 40/163 (24%), Gaps = 23/163 (14%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASG 443
            ++  +       Q +    ++ +       DI +         +          G++  
Sbjct: 417 GLMIDISEAKQTEQALRQSEQKFASVFRQCPDILIIARRADGVLLEVNTAFTEQTGISIE 476

Query: 444 SMHGPIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              G     L       I          + D  +         E   R AD      +I 
Sbjct: 477 QAVGKTATELDLWGVPGIGP---SLLLRLQDECLR------NLELPFRRADGSLFTGLIS 527

Query: 499 IRPMSNSNGDILRYIGIANDITEQK------KSLEGILCNAFQ 535
             P    N      + +  DI++ K      +  E     AF 
Sbjct: 528 ASPYILDN--TPALVMVVRDISQLKSTQQQLQISEEKFAKAFH 568


>gi|81299967|ref|YP_400175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Synechococcus elongatus PCC 7942]
 gi|81168848|gb|ABB57188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Synechococcus elongatus PCC 7942]
          Length = 1047

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 152/573 (26%), Positives = 278/573 (48%), Gaps = 8/573 (1%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +I  +         + +  ER  L      D+V         +  +P    +LG +S  
Sbjct: 474  GLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGTYLYVSPSAEALLGFSSEE 533

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            M G       + H  D D  R      V      L   +R+R     + W     +P+ +
Sbjct: 534  MVGQNPY--DFFHPEDCDRIRDEAHQAVL-MGAELPIVYRMRKKLGGYIWFETLTKPIMD 590

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              G ++     + D+T++ +    +  +A  D+LTG+ NR   ++RL   L  S    N 
Sbjct: 591  DQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRLQNY 650

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            +  V+ +D+D++K IND LG   GD +LVS+ +++  +++  D+ ARL G+ F +++   
Sbjct: 651  KYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLVEDI 710

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +    A  +  +I +P+ L ER I  + SIG    +    +++++L++A+ AMY A
Sbjct: 711  QTFDEPIKVAERILAAIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRDADTAMYRA 770

Query: 685  KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K RG    E F   + S    R+ ++ DL  A+   E  L Y PII+L   +I G EALI
Sbjct: 771  KSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGKITGFEALI 830

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801
            +W HP  G     + + IAEE  +I +I+ ++L +  R +  W+   +    + + +N++
Sbjct: 831  RWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQACRQLSEWQASYSQAADLSMSVNLS 890

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +++L  + L + +Q+++  T   P  + L  +ES+++ N +++  LL  + + GI +++D
Sbjct: 891  AQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLAAINEQGIEISID 950

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S LSYL  +P + +K +GS +   T +     I+ +II +   +    IA+ I 
Sbjct: 951  DFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNNQLGLKAIAEGIE 1010

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                +  L+++G  Y Q    A PL    + +L
Sbjct: 1011 THEQLDLLSQLGYQYGQGYLFARPLNAKDVEQL 1043



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLA 441
           + Q +         +     R          I++ +    D        +     + G+ 
Sbjct: 344 IQQELSDRSKAELALQESQTRFQRIADNLPGIIYGYKLRQDGTDQFTYISSGFREVYGID 403

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +           IH  D +  +T +           + E+R+   + +  WM  R RP
Sbjct: 404 PETALENSNVVWGMIHPEDIEYLKTSIIKS-QQTLKTWKVEYRIITKNGELKWMQGRARP 462

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
               NG+   + G+  DI+++KK    + 
Sbjct: 463 TRQENGE-TFWDGLIIDISDRKKIEAELQ 490



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            +L    +     +            F +  R    V    D++         V     +
Sbjct: 30  ALLAESDLVTEESEQASTGRLAIDQYFRESLRYQQVVEAQTDLILRSRSDTTVVFANKPL 89

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG   G + G    W   +  ND       +   +       +   R   AD +  W
Sbjct: 90  CQVLGWQDGDISGQ--TWGNLVPPNDLSELHEKIAG-LSLENPTFESLNRNYGADQRIKW 146

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    + + N  G+++    +  D+T   + +       +
Sbjct: 147 IQWVNQGIFNDRGELIEIQSVGRDVTTLIEQITREKTLNY 186


>gi|300855041|ref|YP_003780025.1| putative signal transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300435156|gb|ADK14923.1| predicted signal transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 622

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 142/607 (23%), Positives = 283/607 (46%), Gaps = 12/607 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
           ++ I   + I   +        +    V IV ++   VI  +       + +    +R  
Sbjct: 9   LFSIIENLKIAGYVSFYSRYKTVFFIAVTIVAVLLSFVI--IFYINIKKRNLM--EQRYK 64

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI- 467
           LA   S   +W++DI ++    +     I G      +  ++  L  +  ++        
Sbjct: 65  LAAESSNIAIWEYDIEKNNFFASDKWKEITGYKVSK-NDNLKIILEKLLPDENKKIMLNY 123

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L++ +       + EF++     +  W+ IR + + N+ G  L+  G   DITEQK   +
Sbjct: 124 LENHLAGITPFYECEFKLTTKGGKKKWIFIRAKALRNAKGKALKIAGYVTDITEQKLIQD 183

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                 + D+LT +PNR+ F D+L  +L  S+ +D  +  ++ ID+D +K++ND LG   
Sbjct: 184 KNKYLGYYDSLTDLPNRKMFQDKLNKVLKSSSENDK-KGALLFIDVDNFKRVNDTLGHQC 242

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +   +  +++  + + RL G+ F II     +   I      +  +   P  +
Sbjct: 243 GDKLLQYVANTLKNIMEEDNTVFRLGGDEFLIIQHDIKDKNDIVKVCNKIIFAFKAPFKI 302

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
            E  I ++ASIG + +     T+  +LKN+++AMY AK       + +   +S   S + 
Sbjct: 303 NENLIHISASIGISMYPQDGTTADSLLKNSDIAMYKAKDSCKGIYKFYNRRMSYEVSRKA 362

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++E L  A+EN++  L Y P I     +I  +EAL++W   +   +S  EF+ +A++  
Sbjct: 363 ELEEGLRTALENNQFQLYYQPEIDCKTGKIKAMEALLRWKVGENEFVSPIEFIPVAKDTS 422

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++LE   +    W D+     I I IN++   L      + ++ ++ ++   P
Sbjct: 423 LIVPIGKWVLETACKQHKQWLDKGYDFGI-ISINVSKVQLQHPSFFKMVKTVLHESNLPP 481

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +++  +ES VM + + +   L +LR++GIS+ LDDFGT  S L+YL  +P +T+K + 
Sbjct: 482 ELLEIEITESEVMQSLQSNIAALEKLRRLGISIALDDFGTGYSSLNYLRLLPINTLKIDK 541

Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +          +++  II ++  +  +++A+ +      + L  M C+ ++    + P
Sbjct: 542 FFINRIHLNSRDCSVVDGIINLSHKMNISVVAEGVEFVKQFQILRSMNCNKVEGYLFSKP 601

Query: 944 LGFNSIL 950
           +   +I 
Sbjct: 602 MPVENIE 608


>gi|239787383|emb|CAX83859.1| conserved uncharacterized protein [uncultured bacterium]
          Length = 922

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 140/560 (25%), Positives = 262/560 (46%), Gaps = 15/560 (2%)

Query: 402 SDGERQS---LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457
              E+      AV  S   V   +         P  + + G AS  + G   + L     
Sbjct: 360 QSEEKLRHLSQAVEQSPADVVITNAEGIIQYVNPRFSQVTGYASKEVIGKKPSILKSGRT 419

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                 + ++ ++    +    + E   R  D    W    I P+ +++G I  YI +  
Sbjct: 420 PA--ALYDSLWETISAGK--EWRGELMNRKKDGSLFWQHAIISPIRDNSGVITHYISVKE 475

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+ +K+  E ++  A  D LTG+PNR   +DRL   +  +   +  +  +M++D+D +K
Sbjct: 476 DISIRKEYEERLVRQANYDALTGLPNRILAMDRLKQAIAQAQRYNR-KVALMLLDLDDFK 534

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND LG A GD +L     R+ + L+  D +ARL G+ F ++L    ++      A  +
Sbjct: 535 KVNDTLGHAAGDLLLKEAALRLVDCLREGDTVARLGGDEFVLLLPDLTDTSSAEVVAEKI 594

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +   P ++   E  +  SIG A +   +     +++NA+ AMY +K  G      F  
Sbjct: 595 LAACNQPFDVGGHEAYIAGSIGIAIFPDDERDPILLMRNADAAMYRSKREGKGVFRYFTP 654

Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  + + ++  L  A+E +E+ + Y P++      +VG EAL++W +P  G +S  
Sbjct: 655 EMNARALEHMRMESQLRHAIERNEMKVHYQPLVDSGTGRLVGAEALLRWSNPVLGEVSPE 714

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I +I  ++L    RD  SW+       IF+ +NI+ K      L E ++
Sbjct: 715 QFIPLAEETGLILSIGAWVLRTACRDAASWQR--PDHEIFVAVNISGKQFQKRTLVEIVR 772

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + ++++   P+ ++L  +ESV++ + + +  ++  L  +G+   +DDFGT  S +SYL  
Sbjct: 773 SSLNESGLPPACLELELTESVLLEHTQETLSIIQELESLGVGFAIDDFGTGFSSISYLRR 832

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFDT+K + S +      E    +++SII MA ++   ++ + +      + L   GC 
Sbjct: 833 FPFDTLKIDRSFIKDLGDNEGDADLVKSIIAMANSMSLKVVGEGVETHGQREFLRLSGCH 892

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q    + P+      +L+
Sbjct: 893 IAQGWLYSRPIPGKDFQELI 912



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 41/151 (27%), Gaps = 10/151 (6%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + + A         +  +        + D +  +D     V+       + G     + G
Sbjct: 224 RDISARKQAEAASQAAKDHFLAFARSTPDALIAFDEEGRIVSWNEGAEAVYGFRQDEILG 283

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-----EFRVRAADNQFHWMIIRIRPM 502
                L  +               +   RGR  +     E        +   +   +   
Sbjct: 284 SP---LSRLIPERYHAINAAWVKRMAKDRGRHNFTGKPIEAHGLRKSGEEFPVEYSVGR- 339

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               G     +  A DI+++K+S E +   +
Sbjct: 340 WREAGRNFFSVA-ARDISKRKQSEEKLRHLS 369



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 12/157 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442
            T    +         +    ER    V  + D +         V        ++G    
Sbjct: 96  ITTYTDISERRNAEVRLRESEERFRRLVELAPDAILVHQ-GGTIVYANRQAQIMMGAPTP 154

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G  R+ +  I     D     L       +  L  E R+   D     +   +   
Sbjct: 155 TDLIG--RSIIEIIDPACHDLVAKRLKLLARGEQLPL-VEMRLVRLDGGQVEVESTMG-- 209

Query: 503 SNSNGDILRYIGIANDITEQKKSL-----EGILCNAF 534
             + G       +  DI+ +K++            AF
Sbjct: 210 MTTYGGHRAMQSVWRDISARKQAEAASQAAKDHFLAF 246


>gi|124265854|ref|YP_001019858.1| signal transduction protein [Methylibium petroleiphilum PM1]
 gi|124258629|gb|ABM93623.1| signal transduction protein [Methylibium petroleiphilum PM1]
          Length = 1006

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 138/590 (23%), Positives = 264/590 (44%), Gaps = 10/590 (1%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            L    V++ V      +  + ++ ER  + +   GD V   D         P    ++G 
Sbjct: 419  LRTLAVLKDVTEQKRLALELAAEKERIEVTLHSIGDGVISTDEAGRITYLNPVAEQMVGC 478

Query: 441  ASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIR 498
                  G      +            + ++  +  R    ++    +R    + + + I 
Sbjct: 479  LLAQARGLPFAQVVQLFDQESGAPLPSPVEQCLQDREVYGVRESAALRHRSGRDYGVQIS 538

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              P++  +G +L  + +  D+TE +   + +   A  D LTG+PNR  F DR+       
Sbjct: 539  AAPIAGRDGRVLGAVMVFQDVTEARGLAQKMSYLAHHDGLTGLPNRVLFQDRVHQACQSG 598

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                  R  V+ +D+D +K +ND LG AVGD++L ++ +R+   L+  D + RL G+ F 
Sbjct: 599  RRHGR-RFAVIFMDLDHFKHVNDSLGHAVGDELLKAVAQRLTGALRASDTICRLGGDEFV 657

Query: 619  IILISENNSL--KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L   ++     +A+ A  + + +A P  L   E+ V AS+G A +         ++K 
Sbjct: 658  VLLSDLDDVEVDGVAEVAKKILRQVAQPCVLGGTEVNVGASLGIALFPGDGEDPDTLMKR 717

Query: 677  AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A+ AMY +K  G N    F        S R+ ++ D+  A+   +  + Y P++     +
Sbjct: 718  ADAAMYRSKREGRNRYHFFSKAVDDAASARLQLEADMRRALAAGQFIVHYQPVVHGRTRD 777

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             V +EAL++WD    G  S + F+ +AEE  +I  +  ++L +    + +W   A    I
Sbjct: 778  AVAVEALLRWDRAGQGLQSPAVFIPVAEESGLIVPMGHWVLRQACEQLRAWSGTALG-GI 836

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             + +N++   L   +  + +  ++  T    SR++   +ES +M +PE +  +L RL+ +
Sbjct: 837  SVAVNVSPVQLAQADFVDTVADVLHATGVDGSRLEFEITESTLMQDPEATLEMLRRLKGL 896

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            G+ + +DDFGT  S L +L   P DT+K + + +           ++R+I+ MA+++   
Sbjct: 897  GVRIAIDDFGTGYSSLGHLKRFPVDTLKIDHTFVRDLEADADDRELVRAILAMARSLRLH 956

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            ++A+ +  E     L  M C   Q    A P G       L++R   +  
Sbjct: 957  VVAEGVETEAQAAILAAMECPAFQGYLFARPAGAAVTAAWLQDRAATLAR 1006



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 61/209 (29%), Gaps = 3/209 (1%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
            Y    +         A       +      I + + + +    +     +   L +++ 
Sbjct: 231 VYVSVALMLVAAVGGFAGAATGGLLASLSVGIVIALGLFQPGPGEGWLETVAFYLPVVLT 290

Query: 381 LIGFTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           L+   ++   +         I     +       +  ++   D+ R  V         LG
Sbjct: 291 LVPPLLLAAAMERNRQHVHEIEDREAQFRTLYERTPVMMHSVDVERRLVAVNDAWLARLG 350

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G       ++    R+     +             ++++     +   + I  
Sbjct: 351 YERSEVLGRRST--EFLTAESRERAERSIIPRFMREGELRDMDYQMVTRSGEVLDVQISA 408

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEG 528
              ++++G  LR + +  D+TEQK+    
Sbjct: 409 IWETDAHGQPLRTLAVLKDVTEQKRLALE 437


>gi|146309323|ref|YP_001189788.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas mendocina ymp]
 gi|145577524|gb|ABP87056.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas mendocina ymp]
          Length = 766

 Score =  556 bits (1432), Expect = e-155,   Method: Composition-based stats.
 Identities = 153/556 (27%), Positives = 274/556 (49%), Gaps = 9/556 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +       + +     + + V   D  +  V   P  + I G ++  + G     L   
Sbjct: 196 QRANDESLRQAAAVFDATQEGVLVTDPEQRIVHVNPAFSRITGYSAEEVLGQHPTLLKSG 255

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +    F   L   + + R     E   R    + +     IR + + +G I  Y+ + 
Sbjct: 256 RHD--AAFYQSLWQAL-HNRDAWSGEVWNRRKSGEIYPQWQCIRVIHDEHGRISHYVAVF 312

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT  K+S   +   A  D L+ +PNR  F +R+   L+ S   + LR  V++ID+D +
Sbjct: 313 SDITALKRSQRELDYLAHHDPLSNLPNRLLFTERIAHALERSK-SEQLRGAVLLIDLDHF 371

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IN+ LG  VGD +L S+  R+ + L     LARL G+ FG++  +  ++ + A+ A  
Sbjct: 372 KHINESLGHNVGDLLLKSVGERLQQDLPGGCTLARLGGDEFGLLSETCADAPQAAELAQN 431

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + +  P  L E E+ + ASIG + +     +  ++L+NA+ A++ AK  G      + 
Sbjct: 432 LLRCLEAPFRLDEHELYIGASIGISLFPDDADSVEQVLRNADSALFKAKSSGREGYAFYV 491

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +   RV +   L  A++N EL + Y P+  L +   VG+EAL++W HP+ G I  
Sbjct: 492 QELTDYARQRVELASSLRHALDNHELRVFYQPLHDLENGNPVGMEALVRWQHPQRGLIPP 551

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ IAE+  MI  I+ ++LE+    ++ W  + +    F+ +N++S+     EL   +
Sbjct: 552 AEFIPIAEDNGMIGPIDAWVLEQACGQMMRWNAEGSALR-FVAVNVSSRLFSRGELDLKV 610

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++++T  SP +++L  +ES +M +P+ +  LL RLR +G+ L +DDFGT  S L+ L 
Sbjct: 611 AQVLAETGLSPQQLELEVTESAIMEDPDAALSLLTRLRALGVRLAIDDFGTGYSSLARLK 670

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S + G  +     AI R++I +  ++   ++A+ I     +  L  +GC
Sbjct: 671 RLPVDKLKLDQSFVRGLPDDIEDAAIARAVIALGHSLGLNVLAEGIESPAQVDFLRALGC 730

Query: 933 DYIQDSHVASPLGFNS 948
           DY Q  H   P    +
Sbjct: 731 DYGQGYHFGRPAPVTA 746



 Score =  152 bits (385), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  +GL +A  +RL +      +     L+ +++     +H          + S+ ER 
Sbjct: 28  LLTVLGLSLAQLERLQSLKGLIFVGLTAALLYLVLH----RHAQQYRRARLQLTSNEERL 83

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            LA+  + D +WDWD    RV  +P  A +LGL   ++      W   +H  DR+     
Sbjct: 84  RLALDATRDGLWDWDFAAQRVFFSPSYAALLGLTPQALGDTRDAWAERLHPEDRERVLQA 143

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +  +       +R+R AD  + W   R R + +  G   R+IGIA+DIT+Q+ + E
Sbjct: 144 L--ALDQQYDSYDNVYRLRHADGTYRWFHSRGRLLRDEGGRPQRFIGIASDITQQRANDE 201

Query: 528 GILCNA 533
            +   A
Sbjct: 202 SLRQAA 207


>gi|118581402|ref|YP_902652.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118504112|gb|ABL00595.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pelobacter propionicus DSM 2379]
          Length = 876

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 161/589 (27%), Positives = 279/589 (47%), Gaps = 16/589 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TT 430
             G  LI  L G+ +   +LA+           +R    +  + DI+   DI   R+   
Sbjct: 281 FLGFCLISSLTGYILYAKLLASRK---ERKDTEKRYRSVISQASDIILLVDIDSRRILEA 337

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +L  A              I  +DR      ++  +  +   L  E  VRA D 
Sbjct: 338 NLAFQRLLNYAPDKATQLTLYD---IMEDDRSGVDWRINRILSEKVCFL-GEHTVRAEDG 393

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +    +  S G+      +  DI+E+K+    ++  A  D LTG+PNR  F DR
Sbjct: 394 SMVEVDLNANLV--SYGEQQVICMVLRDISERKRFEGELMHMAHHDALTGLPNRTLFFDR 451

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L        +   V+ +D+D++K IND LG   GD +L  +  R+  +++  D ++
Sbjct: 452 LRQGLYKKERSGKM-LAVIYLDLDRFKIINDTLGHHTGDMLLKEVADRLRGVVRKADTIS 510

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ F II+            A  +    + P  L + E+ +TAS+G   + +   T+
Sbjct: 511 RLGGDEFTIIIDEIATPADSLLVAEKILHVFSAPFRLEKHEMFITASMGVTLYPNDGDTA 570

Query: 671 SEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
            ++LKNA+ AMYHAK  G N  + F   ++S  S+R+ ++  L  A+  +E  L Y P +
Sbjct: 571 EKLLKNADTAMYHAKEEGRNTYQFFSEEMNSRVSERLSMETGLRHALARNEFLLHYQPRV 630

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 IVG+EALI+W  P+ G I    F+ +AEE  +I  I  ++L        +W++ 
Sbjct: 631 NTTTGRIVGVEALIRWQQPQKGLILPDAFIPLAEETGLIIPIGEWVLRNTCTQARAWQEA 690

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + I +NI+ +    + L + ++ ++ +T   PS ++L  +ESV+M NPER+  LL
Sbjct: 691 -GFAQMRISVNISCRQFTHDNLPDTIRGILRETGLQPSCLELEITESVIMLNPERAISLL 749

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+++GIS+ +DDFGT  S LS L  +P D +K + S ++G    +    ++ +II + 
Sbjct: 750 NELKEMGISIAIDDFGTGYSSLSLLKRLPADILKIDKSFVSGIPGNKSDETLVATIINLG 809

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            N+   ++A+ +  +  +  L    C  +Q  + + PL   ++  LLK 
Sbjct: 810 HNMGLGLVAEGVERQEQLHFLEERNCQEVQGYYFSKPLPAETLQPLLKN 858


>gi|289208678|ref|YP_003460744.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288944309|gb|ADC72008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 944

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/584 (25%), Positives = 260/584 (44%), Gaps = 13/584 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V A    +  +     R    V    ++++  D         P    + G       G 
Sbjct: 360 DVTAHRRAAAALKESENRYQDVVNHISEVIFRTDAEGRWTLLNPAWEALTGFKVEETLGQ 419

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                 ++   DRD+ ++   + +         E R+R  D    W+ I      + +G 
Sbjct: 420 P--MCAFVDPEDRDDAQSFCSTLLEGGTHAQSEEIRLRTHDGSHRWVSIYASARFDEDGH 477

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+   G   DI+++K++ E I   AF D LTG+PNR    DRL   L  +A   +    V
Sbjct: 478 IMATFGTMMDISDRKEAEEEIRRLAFFDGLTGLPNRTLLHDRLGQALANTARTRH-HGAV 536

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--- 625
           + ID+D +K IND LG AVGDD+L  + RR+   ++  D LARL G+ F IIL   +   
Sbjct: 537 LFIDLDNFKDINDTLGHAVGDDLLCQVARRMENSVREADTLARLGGDEFVIILNDLHPDP 596

Query: 626 --NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              + +       +   +  P  L  +   VT SIG   ++   +   E+LK A+LAMY 
Sbjct: 597 ARAATEAEAVGRKLINLLREPFQLAGQNRHVTPSIGATLFSGRSLGVEEVLKQADLAMYR 656

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK+ G N V  +     R    R  ++ +L  A++     +VY P +      ++G E L
Sbjct: 657 AKNAGRNTVRFYDPELHRAVEARFELENELRHALDEDRFSVVYQPQVDAE-GRVIGAELL 715

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+H + G IS +EF+ +AE+  +I  I   +L      + +W+  A    + + +NI+
Sbjct: 716 LRWEHAQRGAISPAEFIPVAEQTGLIVPIGRKVLRTACAQLGAWQHTAAFRDLTLSVNIS 775

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++   D      ++ ++ +T     R+KL  +ES+++   +     +  LR +G+   LD
Sbjct: 776 ARQFRDPHFVPHLREILQETGAPGDRLKLELTESMLLEEIDTVVAHIDELRALGVEFALD 835

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P   +K + S +          AI + ++ +A+ ++  +IA+ + 
Sbjct: 836 DFGTGYSSLAYLKQLPLAQLKIDQSFVRDVLDDPNDAAIAQMVVNLARTLDLDVIAEGVE 895

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                  L  +GC + Q      P     + + +    P  ++ 
Sbjct: 896 TVEQRAFLFGLGCRHFQGFLYGYPGDLADLERAVLGASPSFESA 939



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 6/130 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPY 455
           +Q +     R    + G+  I+W+ +           D   +LG  S ++ G       +
Sbjct: 243 NQQLNRSVARLESMLGGANAILWESNPESHEWEFVAGDTRKLLGFPSRNL-GRGELRARH 301

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           IH +D    R    +           ++R    + Q+ W+   +    +  G      G+
Sbjct: 302 IHPDDLPRVREAAHAA---GNEPQVVDYRFAHRNGQWIWLRDILSSAEDP-GSRRSLRGL 357

Query: 516 ANDITEQKKS 525
             D+T  +++
Sbjct: 358 TLDVTAHRRA 367


>gi|83312716|ref|YP_422980.1| hypothetical protein amb3617 [Magnetospirillum magneticum AMB-1]
 gi|82947557|dbj|BAE52421.1| Hypothetical protein yddU [Magnetospirillum magneticum AMB-1]
          Length = 802

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 152/598 (25%), Positives = 290/598 (48%), Gaps = 15/598 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWD 422
            A+   L  + + +    +        FS+ +    +R+        A+  +   V   D
Sbjct: 206 HAIGAKLFDVHMHLVADSVGQRDRVAIFSRDVTQSHQRRQQLRKLETALEQAPVSVMITD 265

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                         + G +   + G     L         +    +   +       Q E
Sbjct: 266 SHGAIEYVNRAFVLVSGYSEDEVLGRNPRLLKSG--ETVASLYRDMWHCLA-SGATWQGE 322

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              RA D    W    I P+ + +G +  ++ +  +IT++K++ + ++  A  D LTG+P
Sbjct: 323 LCNRAKDGSLFWEYATISPIRDDDGVVTHFMAVKENITQRKETEQQLVHQATHDTLTGLP 382

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DR+   ++++  +   R  +M +D+D++K +ND LG   GD++L  ++ R+   
Sbjct: 383 NRLLLEDRVHHAIEVAKREGR-RIGLMFLDLDRFKIVNDSLGHVAGDELLKVVSDRLRHT 441

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D +ARL G+ F ++L    ++ ++A+ A  +  ++  P+ L   ++ V ASIG A 
Sbjct: 442 LRRSDTVARLGGDEFVVVLTHFQSTTELAEVAEKISAALDEPVELSGHKVHVGASIGIAI 501

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSEL 720
           +       + ++K+A+ AMY AK +G N    +   ++    DR+ ++E L  A+   E 
Sbjct: 502 YPDDGDNFNALMKDADTAMYRAKQKGRNTFCFYDSNMNDEALDRLKLEEALRRALVRGEF 561

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P + L      G+EALI+W+ P+ G +S + F+ +AEE  +I  I  ++LE   R
Sbjct: 562 QLFYQPQVDLQTGRTSGVEALIRWNSPERGQVSPALFIPVAEESNLISMIGWWVLEESCR 621

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I +WR+      I + +N++ +  L++ L E +  L+++    PS++++  +ES VM  
Sbjct: 622 QIAAWREAGL-TGIKVAVNVSGRQFLNHALVECISDLMAQYAVLPSQLEIELTESTVMAE 680

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898
           P+R+   L RLR+IGI +++DDFGT  S LSYL  +P  T+K + S +          AI
Sbjct: 681 PDRAIEQLTRLREIGIQVSVDDFGTGYSSLSYLKRLPLSTIKVDRSFVRDVNNQSDNAAI 740

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +I+ +A  ++ +I+A+ +  E + + L   GC  +Q    A P+  + +   +  +
Sbjct: 741 VSAILGLADALDMSIVAEGVETEGEEQHLKDAGCIKVQGFRYAKPMPADQLAAWMLRQ 798



 Score = 42.2 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 48/170 (28%), Gaps = 8/170 (4%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            +       +    L    +    +  V       Q I          +  S D +   +
Sbjct: 89  GSSFWSVLTIRSATLNGEAVNLAWLYDVSKRKQAEQAILDGKTLIRAMLDSSTDGIVLVN 148

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +      + I    S  + G       ++  +     R  +D  +  RR  ++  
Sbjct: 149 AEGTILAVNAAASAIFEKNSDDLPGKAI--WDHLPDSVVAPMRRGIDRVLD-RRETVESH 205

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             + A         + +  +++S G   R    + D+T+  +  + +   
Sbjct: 206 HAIGAK-----LFDVHMHLVADSVGQRDRVAIFSRDVTQSHQRRQQLRKL 250


>gi|171059694|ref|YP_001792043.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Leptothrix cholodnii SP-6]
 gi|170777139|gb|ACB35278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptothrix cholodnii SP-6]
          Length = 1147

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/568 (26%), Positives = 260/568 (45%), Gaps = 13/568 (2%)

Query: 401  FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                ER  LA      + + V   D  R  V+      T+LG     + G     L    
Sbjct: 584  LQAEERLRLAAQVFDSTQEGVMITDARRRIVSVNRAFTTLLGYTETEVLGQTPRMLSS-G 642

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +DRD F   + + + +  G  Q E   R  D      ++ I  + + +G +  Y+G+  
Sbjct: 643  RHDRD-FYEAMQAQLDH-TGLWQGEIWNRHKDGSPVPELLSISAVRDPHGQVTHYVGVFT 700

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DIT  K+S   +   A  D LT +PNR  F +RL   L  +  +   R  V+++D+D++K
Sbjct: 701  DITHLKESEARLEFLAHHDPLTHLPNRLLFNNRLDQALHQAEREGR-RLAVLLLDLDRFK 759

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             IND  G   GD++L  + +R+ + L+  D LARL G+ F +++    +    A  A  +
Sbjct: 760  DINDSYGHLAGDELLKYVAQRLTQRLRQSDTLARLGGDEFALLMHDLRHDDDAARLASEL 819

Query: 638  RKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
               ++ P  +    E++V  SIG   +     T   +L+ A+ A+Y AK  G      + 
Sbjct: 820  LSGLSEPWRSSEGVEVSVGVSIGICIYPDHGRTPQTLLQGADAALYRAKGDGRGVYRYYA 879

Query: 697  VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                R   +R+ I+  L  A+ + +L L Y P + L    I+G EAL++W  P+ G I  
Sbjct: 880  DEMTRIARERLHIEARLRRALADGQLLLHYQPQVDLRSGRIIGAEALVRWQDPEQGLIPP 939

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AE   +I  I  ++L    R   +W D    P + + +N++ +     +L   +
Sbjct: 940  VRFIPVAEATGLIGEIGAWVLGEACRQARAWLDAGL-PALTVAVNVSPRQFHQADLATQV 998

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              ++ +T   P+ ++L  +E  +M     +  +L RLR +G+ + +DDFGT  S L+ L 
Sbjct: 999  MQVLVETGLPPTHLELELTEGALMEREAEALQVLQRLRGLGVGVAIDDFGTGYSSLASLK 1058

Query: 875  YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P D +K + S +T   +      I  +II M  ++   ++A+ +     +  L +  C
Sbjct: 1059 RFPIDVLKIDRSFITDIPDDPDDMEIAAAIIAMGHSLGILVLAEGVETAEQLAFLQQRNC 1118

Query: 933  DYIQDSHVASPLGFNSILKLLKERFPLV 960
            D  Q    + PL   +  +LL+E+  L 
Sbjct: 1119 DRYQGFLRSRPLPAQAFEQLLREQASLT 1146



 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + + A       +        LAV GSGD +WDWD++ D+++     A +L     
Sbjct: 447 LAIARDITAERDARAALQRSEASLRLAVDGSGDGLWDWDLITDKISFGAAYARLLRYPGN 506

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +    R +   +H +DRD     + + + Y        +R+R  D ++ W   R     
Sbjct: 507 DLARDFR-FRERLHPDDRDRSIAAVRNSIEY-GTPFVATYRMRCFDGEYRWFQGRGMCHR 564

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +++G   R+ G+  D+T++ ++ E +   A
Sbjct: 565 DAHGTPQRFSGVLTDLTDRLQAEERLRLAA 594



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 10/182 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
             + +     W+    +  +       +    L   LI               +      
Sbjct: 8   ATLILLLGTAWLVAGPQPASWFTAIQTLLCASLAGWLI--------RRAARAQEQAEQAH 59

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R +  V  +   +    +           A I+G            +    H +D    
Sbjct: 60  KRVADVVADAAVGISLTALDGRLTEVNRRFAEIVGRTVEE--TQRLRFQDITHPDDLAAD 117

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +   +  R  R + E R    D+   W+ + +     ++G   ++I +  DIT  K+
Sbjct: 118 LDKVADLLAGRIDRYRMEKRYLRPDSSTIWVTLTVSLARGADGQPRQFISVVQDITAVKQ 177

Query: 525 SL 526
           + 
Sbjct: 178 AE 179



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
              D V   D+    +   P    ++GL+   + G     L  I+           D   
Sbjct: 195 SIPDCVAVRDLDGRYLLANPAAERLIGLSEAEICGRT---LEQIYPEPEAGQARRADRLA 251

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             + G ++ E    AAD     + + I P+   +G     I +  D++ +++    +L  
Sbjct: 252 LSQNGLVRREASYTAADGSVATVDLAISPLLGIDGRATGIISVGRDVS-RERHNLRLLEQ 310

Query: 533 AFQ 535
           A +
Sbjct: 311 AHR 313


>gi|77920527|ref|YP_358342.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77546610|gb|ABA90172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pelobacter carbinolicus DSM 2380]
          Length = 1141

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 156/576 (27%), Positives = 270/576 (46%), Gaps = 13/576 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                 L        I +   R  L +  S   ++ +          P  A I G     +
Sbjct: 548  EKHQRLRVQELIDNIDAAESRYQLLIENSLVGIFVYQ-HHRYTYVNPRFAEIFGYTPEEI 606

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMII-RIRPMS 503
                      +H +D+          +G      L+YEF       Q   + I   R + 
Sbjct: 607  VDSAPQP-QLVHPDDQLFVDANNLKILGGVNANHLRYEFVGLRKTGQPIDVEILIGRGI- 664

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             S G     IG   DITE+K++ + I   AF D LTG+ NR  F+DR+   +  +    +
Sbjct: 665  -SEGQPA-LIGSLLDITERKEAEKTIEHLAFHDPLTGLANRLLFMDRIEQAIAHAHRH-H 721

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                +M +D+D++K IND LG + GD  L  + +R+   L+  D ++R  G+ F ++L  
Sbjct: 722  ESFALMFLDLDRFKTINDSLGHSAGDAALKEVAQRLTTCLRETDTVSRFGGDEFNVLLSG 781

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +I   A  + KS+A P ++ + E+ +T SIG AS+      +  ++KNA+ A+Y 
Sbjct: 782  PSHEEEIELIAHKILKSLAWPYDINDHEVFMTCSIGIASYPKDGREAITLVKNADTALYR 841

Query: 684  AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G N+ + +   +++   +R+ ++  L    E  EL + Y P + L    I GLE L
Sbjct: 842  AKDLGRNNFQFYSSSMNARALERMAMESSLRRMFERQELRVHYQPQVGLQSGRITGLEGL 901

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W+HP    I+ S F+ +AEE  +I  +  ++L+     + +W D     P+ + IN++
Sbjct: 902  VRWEHPVGNMIAPSVFVPLAEETGLIVPMGEWVLQAGCYQLKTWLDA-GFAPMRLGINVS 960

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L  ++  E +  ++ +    P  + L  +E+V+M N   +   L RLR +GI++++D
Sbjct: 961  AHQLQKSDFAELVMQVLKECDLPPHYLNLEITETVIMHNMNEAFETLRRLRAVGITISID 1020

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S LSYL  +P D +K + + +           I R II MA  +   +IA+ + 
Sbjct: 1021 DFGTGFSSLSYLKDLPADHLKIDRAFVQNLPFGNNEANIARHIIEMAHGLNLKVIAEGVE 1080

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  +  L   GCD IQ   V+ PL    I ++L  
Sbjct: 1081 NQAQLDFLREAGCDEIQGFLVSRPLAAEDITEILTN 1116


>gi|213966757|ref|ZP_03394908.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato T1]
 gi|213928607|gb|EEB62151.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato T1]
          Length = 1278

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 710  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 769  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 826

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 885

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 886  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 945

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 946  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 1005

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 1006 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1065

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1245 EHGCDEVQGYLFGRPMPPKQFEA 1267



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 620

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 621 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 678

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 679 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +      +    +H +D  +++ + L          LQ
Sbjct: 468 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 527

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 528 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 587

Query: 533 A 533
           A
Sbjct: 588 A 588


>gi|288957149|ref|YP_003447490.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510]
 gi|288909457|dbj|BAI70946.1| GGDEF-domain-containing signaling protein [Azospirillum sp. B510]
          Length = 1021

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 149/648 (22%), Positives = 283/648 (43%), Gaps = 13/648 (2%)

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
            ++            +     + L    W+++ +    L ++    L    ++   +   
Sbjct: 343 LNLAAIAAQTGPIDRLVNKPFSFLETYRWLVLSVGGALLLLSGMVLLLAFALRQRRMAEA 402

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL-----AVLGSGDIVWDWDIVRDRVTT 430
            L V        +  L           D  R+           S DI+W WDIV D    
Sbjct: 403 ALQVSNQALGESRRELQGKVEELTASKDALRERERRMRLVAESSRDILWTWDIVNDIRVL 462

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           +  +  +LG+ + S+    R W   IH  D+      L   +       + E+RVR  D 
Sbjct: 463 SGRVEELLGIDALSIDSR-RAWTDRIHPEDQALAAEALQRHLSGELPDYRAEYRVRHRDG 521

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            + W+    +   ++ G      G   DIT+QK+    +   A  D LTG+PNR +    
Sbjct: 522 NYLWIYATGKATFDAGGKPTMMAGSYTDITDQKRQQAWLDHLAHFDPLTGLPNRLTLEQH 581

Query: 551 LTTILDLSATDDNL-RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           +  ++  +    N     ++ +D+D +K IND  G   GD++L+ L  RI +       L
Sbjct: 582 VDRLIADNKASGNAAPLALLFLDMDNFKFINDGFGHKSGDELLMMLGLRIRKGAGDGVFL 641

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F +++    ++ +  + A  + +++A P  +  +   V+ S+G A +      
Sbjct: 642 ARLGGDEFVVVVQG-GDAEEPVEVARRVEQAMAAPFLVEGQHFFVSCSVGIARYPWDGRC 700

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727
             ++L+NA+ AMY AK  G   + +F     R+  +R+ +     LA E     L Y P 
Sbjct: 701 FDDLLQNADTAMYRAKDSGRGRICTFTSDMNRNVVERMRLLSRARLAFERQTFSLHYQPQ 760

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +   D  + G EAL++W   + G +S   F+ + E+  +I  +  ++LE    + +    
Sbjct: 761 VATADGRVRGFEALVRWTDSELGPVSPDRFIPVCEDSGLIVPLGFWVLETACIEAVGL-A 819

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +N+++  L  ++    +  +++ T   P R++L  +ES ++G+ + +   
Sbjct: 820 CRGAGEVTMSVNMSAVQLAQHDFVPRVLEILANTGLPPHRLELEITESQMIGSLDAAIEK 879

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905
           L  LR+ GI + LDDFGT  S L+YL  +P +T+K + + +          +++ SI  +
Sbjct: 880 LNLLRRAGIHIALDDFGTGYSSLTYLRTLPINTLKLDKAFINDVHRRPDARSMVSSISRI 939

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A ++   ++A+ +      + L +MGCD IQ   V+ PL  + I   L
Sbjct: 940 AHDLTRKVVAEGVEDTAQWEVLAQMGCDLIQGYFVSRPLPADRIDAFL 987


>gi|77461097|ref|YP_350604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas fluorescens Pf0-1]
 gi|77385100|gb|ABA76613.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
            fluorescens Pf0-1]
          Length = 1282

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   + N L   
Sbjct: 714  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPNMLTVD 773

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               D  + R +L     ++    + E  ++  + + +   + I  + +  GD+  Y+   
Sbjct: 774  EQQD-AHLRYVLKQL--HQHSTWEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 830

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL T L  +    +    +M +D+D++
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSW-VVLMFLDLDRF 889

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L   ++      +   
Sbjct: 890  KPINDSLGHAAGDRMLKDMATRLLACVDDDDTVARMGGDEFTLLLQHRSSREMALNRAIH 949

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 950  VAEQILGSLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1009

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP+ G
Sbjct: 1010 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1069

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  +++    R + +W       P  + +NI+++   D +L
Sbjct: 1070 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQSRVRVP-KVSVNISARQFSDGQL 1128

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ +T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1129 GTRIATILKETGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSL 1188

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     +  L 
Sbjct: 1189 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1248

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1249 EHGCDEVQGYLFGRPMPAGRFEA 1271



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      S+ +    +R  +      D+++  D        +P +  +LG  + 
Sbjct: 565 IGVAKDITEQIEASESLRDSEQRYRMLAESISDVIFSTDSQLSLNYVSPSVQAVLGYDAE 624

Query: 444 SM--------HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADN 490
            +            +      H+ DR      L         R Q + ++       AD 
Sbjct: 625 WIFQNGWQSTIANPQQLSGIYHLMDR--VSKALGKPEQLVTLRSQVQTQMFLFDCLRADG 682

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G     +G+  DI++Q+++ + +   A 
Sbjct: 683 RKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726



 Score = 62.3 bits (150), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  V    D ++  D++  R + +   +   LG   
Sbjct: 432 ILSINDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNR 491

Query: 443 GSMHGPIRNWLP-YIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H  D D + R+            LQ + R R  D ++    IR +
Sbjct: 492 TELHQMGEYFWEILLHPEDADYYHRSRQMQRHAGYSQLLQCQLRFRHRDGKWRRFDIREQ 551

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  + +  + R IG+A DITEQ ++ E + 
Sbjct: 552 ALARDKHDQVTRIIGVAKDITEQIEASESLR 582


>gi|149374686|ref|ZP_01892460.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter algicola DG893]
 gi|149361389|gb|EDM49839.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter algicola DG893]
          Length = 724

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 145/576 (25%), Positives = 270/576 (46%), Gaps = 22/576 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A  +    +    E     V  S DIV+  D           I ++LG     + G  
Sbjct: 137 LRAHEHIRMRLEKSEELHRYIVNSSPDIVFMLDGDGHFCFVNSKIESLLGYQPTELCG-- 194

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIRPMSNS-- 505
           R++   +   D       L             E R++   ++       I   P+     
Sbjct: 195 RHFRHILDDRDIARGTYALKGPNISADNPRTLEVRLKTRGSRKATRHFEITAFPIDPETW 254

Query: 506 ----------NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                     NG   RY G A D+TE+K++   I   A+ D LT +PNR  F DRL   +
Sbjct: 255 PHTNHDDGKYNGREARYYGTARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLDLAI 314

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +   +  +  VM +D+D++K IND LG A+GD +L ++T+R+   L+  D L+R  G+
Sbjct: 315 THARRSEQ-KLAVMFLDLDRFKVINDTLGHAMGDRLLQAVTQRLERCLRKGDTLSRFGGD 373

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L S +        +  + K++  P  L + E+ V  SIG A++  +  +  ++++
Sbjct: 374 EFTLLLPSIHGYEDARQISKKLIKALRAPFQLGDHEVFVGVSIGIATYPEAGESMDQLIQ 433

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA++AMYH K RG +    +   +S   ++R+ ++ DL +A+E  EL + Y P +     
Sbjct: 434 NADIAMYHVKARGKDGYRFYSESMSIDTANRLSLERDLRMALERDELRVFYQPQVCSSSN 493

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VGLEAL++W HP+ G +   +F+ +AEE  +I  ++  +L++   D+  W  +     
Sbjct: 494 RVVGLEALVRWQHPERGLLYPRDFLPLAEETKLIAKLSECVLDQACHDVGQWIRE-GHSD 552

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++   +      E + A +    + P  +++  +E+V+M + E+    L  L  
Sbjct: 553 LRLAVNLSPVQVEHPRFVETLMAQLQAHGFPPQNLEIEITENVIMNDLEQISQKLRELAS 612

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G+ + +DDFGT  S L+Y+  +P  T+K + S +      E    I+ +I+ MA  ++ 
Sbjct: 613 LGVRIAIDDFGTGYSSLNYIHRLPIHTLKVDQSFVKAIRRGEDGACIVNAIVAMAHGLKL 672

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            I+A+ +  +  +  L  +GC  +Q          +
Sbjct: 673 QIVAEGVETDEQLTYLKSLGCHQVQGFFYGPARPAD 708


>gi|119773224|ref|YP_925964.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119765724|gb|ABL98294.1| GGDEF domain protein [Shewanella amazonensis SB2B]
          Length = 817

 Score =  554 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 152/648 (23%), Positives = 297/648 (45%), Gaps = 17/648 (2%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI---VILIGFT 385
             ++ +    LLI  ++ +F +     +    RL        L   + +    V  +   
Sbjct: 170 RFLQIWGGGALLILMFLTVFHYVGVRPLRSLLRLARLKQAEPLAQTVPMASSEVAKLQQY 229

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q  L      + +    +R   AV GS   +WDW I    +  +     +LG     +
Sbjct: 230 MYQTELKLKRTLKQLRDSEQRWLFAVEGSQTGIWDWQISSGELFLSDRWKEMLGYGPTEL 289

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
                +W   +H +D+      L S++       +   R++     + W++ R   +   
Sbjct: 290 KNEYSSWEGRLHPDDKARVLERLQSYLKGEADVYESRHRLKHRQGHYIWVLDRGMVVEWQ 349

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G   R IG   D++E  ++ + I   A  D+LT + NR++ +D L             
Sbjct: 350 EDGRPARVIGSQRDVSEDMRNQQAIAHQANHDSLTNLANRRAVMDALFEFQQAGPGSMLR 409

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS- 623
              +++ID+D +K +ND LG   GD +L+    R+        ++ARL G+ F I+++  
Sbjct: 410 LGALLLIDLDNFKLVNDALGHHHGDRLLIQAAARLSGFFSGNALVARLGGDEFAIMVLDL 469

Query: 624 ----ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAE 678
               E  + +       +++ IA    L +++I VTAS+G   + +      +++LK+A+
Sbjct: 470 ATDTEQAAHQAMQLGAELKQQIARSFQLSDQQINVTASVGVCLFDNHHPVEPAQLLKHAD 529

Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N    +        ++ + ++ +L  A+E  +L LV+ PI    D E+V
Sbjct: 530 MAMYAAKDGGRNGCALYSDELEDKATENLWLQNELRHAIEREQLSLVFQPIFNH-DGELV 588

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EAL +W HP+ G IS ++F+ +AE+  +I  I  ++L  + R + +  ++    P  +
Sbjct: 589 CCEALCRWHHPERGPISPAQFIPVAEDSGLIIGIGQWVLLEVCRTLKAMSEKGTPMPA-V 647

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+++     +  E + AL+     SP++I+L  +E  ++ N       + RLR  G 
Sbjct: 648 AVNISARHFNQIDFVERLLALLKAHQVSPAQIELELTEYALLSNLNAISERMQRLRSAGF 707

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIA 915
           S+ +DDFGT  S LSYL  +P   +K + + +     +   AI+R+I+ MA ++   ++A
Sbjct: 708 SIAIDDFGTGYSSLSYLQSLPLSRLKLDAAFVGRIGTEAGNAIVRAIVDMAHSLMLKVVA 767

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  E     L+ + CD+ Q   +  P+  + ++   +   P  ++ 
Sbjct: 768 EGVETEAQQAYLSSLECDFFQGYLLGKPMPASELVA--RRIAPSAQSA 813


>gi|74317474|ref|YP_315214.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Thiobacillus denitrificans ATCC 25259]
 gi|74056969|gb|AAZ97409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC
            25259]
          Length = 1212

 Score =  554 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 154/555 (27%), Positives = 268/555 (48%), Gaps = 9/555 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +     SG+ +   D  R  +   P    + G A   + G     L        +++R+
Sbjct: 661  YASIFEHSGEAILIADQARHIIAVNPAFTNLTGYALDDIRGEEPTILAG-GQASEESYRS 719

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
               S    + G  Q E   R  D   +   + +  + +++G +  Y+    DITE+K + 
Sbjct: 720  TWASL--EQTGYWQGEIIDRRKDGTLYPKWMAVSVVRDADGVLTHYVASFTDITERKLAE 777

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
              I   A+ D LTG+ NR S   +L   L L+  +      V+ +D+D++K IND LG A
Sbjct: 778  AQIKHLAYHDPLTGLSNRFSLQTQLDQTLALARREQRT-LAVVFLDLDRFKSINDSLGHA 836

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            +GD +LV + RR+ + ++  DI+ARL G+ F ++L    ++   A  A  +  ++     
Sbjct: 837  LGDQLLVEVARRLRDNVRDSDIVARLGGDEFVVVLTEVGDAAGAARVADKLLGALVPRYR 896

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
            +    +  TASIG + +      +  ++KNA+ AMYHAK +G ++V+ F     +S    
Sbjct: 897  IGGHALHTTASIGISLYPHDGDDADALMKNADTAMYHAKSQGRDNVQFFTPEMNQSVLKR 956

Query: 707  IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            ++   DL +AVE  +  L Y P I      +V +EAL++W HP+ G +S +EF+ IAEE 
Sbjct: 957  LQFDHDLRVAVEAGQFELHYQPQINSTSGRVVKVEALVRWQHPREGLVSPAEFIPIAEET 1016

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  +  ++L    R +  WRD   +  + + +N+++  L    L   +   +      
Sbjct: 1017 GLILPLGEWVLNEACRQLRLWRDA-GITDLTVAVNLSAHQLHSPALIPMVARTLGNHGLE 1075

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             + + L  +ESV M +   S   L  LR +GI L++DDFGT  S LSYL  +P DT+K +
Sbjct: 1076 GADLCLEITESVAMRDTTASIAQLQALRDLGIHLSIDDFGTGYSSLSYLKLLPIDTLKLD 1135

Query: 885  GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S +         +AI  + I +A ++   ++A+ I  E   + L    CD++Q    ++
Sbjct: 1136 QSFVCEIEFNPSDVAICAATIALAHSLGLEVVAEGIETETQRRLLASHRCDFMQGYLFSA 1195

Query: 943  PLGFNSILKLLKERF 957
            PL     L  ++E+ 
Sbjct: 1196 PLPAERALAYIREQQ 1210



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 1/139 (0%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +     R   A   +    W  D+V  ++  + ++  I      +       +L 
Sbjct: 525 RAEAALKESESRLKEAQRIAQVGSWALDLVTGKLIWSDEMFRIFETDEAAFGQSYEAFLD 584

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H  DR++        V           R+   D +  W+  R       NGD +   G
Sbjct: 585 ALHPEDREHVNKAYMHSVTNHT-PYDLVHRLLLPDGRVKWLHGRGETRYGKNGDPIASCG 643

Query: 515 IANDITEQKKSLEGILCNA 533
              DIT +KK  + +   A
Sbjct: 644 TVQDITARKKQEDALRLYA 662



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 42/133 (31%), Gaps = 4/133 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+ +      Q   +  +G +V   D              +   +   + G  R    +I
Sbjct: 398 SRELRELSALQGAILEHAGALVVVLDREGRIRRFNRACEALTQYSFSEVEG--RQVWDFI 455

Query: 457 HINDRDNFRTILDSFV--GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
              +R   +    + +     + R        A D     +      + ++ G +   + 
Sbjct: 456 PPEERRIVQDEAFAVLFNDPEQSRSTLTNHWVARDGGRRLIEWSNSVLHDAQGKVEFVVA 515

Query: 515 IANDITEQKKSLE 527
           + ND+T++ ++  
Sbjct: 516 VGNDVTDKMRAEA 528


>gi|28871763|ref|NP_794382.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. tomato str. DC3000]
 gi|28855015|gb|AAO58077.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1278

 Score =  554 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 265/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 710  QRRAEKDLRMAATVFEHSASAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 769  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 826

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 885

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 886  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 945

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 946  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 1005

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 1006 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1065

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1245 EHGCDEVQGYLFGRPMPPSQFEA 1267



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 620

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 621 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 678

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 679 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +      +    +H +D  +++ + L          LQ
Sbjct: 468 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 527

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 528 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 587

Query: 533 A 533
           A
Sbjct: 588 A 588


>gi|330987546|gb|EGH85649.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. lachrymans str. M301315]
          Length = 1250

 Score =  554 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 682  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 741  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 798

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 799  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 857

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 858  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 917

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 918  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 977

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 978  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1096

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1097 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+  +    
Sbjct: 1217 EHDCDEVQGYLFGRPMPASQFEA 1239



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 592

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 593 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 650

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 651 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 694



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 400 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 459

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 460 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 519

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 520 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 560



 Score = 38.0 bits (87), Expect = 8.5,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 34/188 (18%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+     
Sbjct: 226 LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 285

Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459
                 V T  D   +L                            +    + W P I   
Sbjct: 286 QLEALEVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 345

Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            R        ++ + +     RL+ E  +  A  Q   + + +R +  S  D    I   
Sbjct: 346 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR-LPESRSDFDAVILSI 403

Query: 517 NDITEQKK 524
            DIT +K+
Sbjct: 404 GDITSRKQ 411


>gi|295400041|ref|ZP_06810021.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977820|gb|EFG53418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 574

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 142/549 (25%), Positives = 275/549 (50%), Gaps = 12/549 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
            +  S + +   D     +   P    + G ++  + G   R     +H  D+  +  + 
Sbjct: 21  ILEYSSESMIVTDAQNRILFVNPAFEIVTGYSADEVIGKNPRILQSGMH--DKSFYEKMW 78

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           ++    + G  + E   +  D + +   + I  + +  G++  Y+ I +DITE K+++E 
Sbjct: 79  NAL--NQYGVWKGEIWNKRKDGELYLEWLTISAVKDQRGNVTNYVAIFSDITEHKRNMEQ 136

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR  F  RL +I+ +S   +     ++ +D+D++K IND LG  +G
Sbjct: 137 LTKLALYDPLTNVPNRYLFEKRLESIIRMSKKHNQ-SFALLFLDLDRFKNINDTLGHHMG 195

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L    +R+  +L+  D +AR  G+ F IIL +  +  +    A  + +S+  P N+ 
Sbjct: 196 DMLLKETAQRLNGMLRKQDTIARFGGDEFVIILPNLKHIREAVYMAENIIESLKRPFNVN 255

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
            +E+ ++ SIG + +         +++ A+ AMY AK  G N    +   +++       
Sbjct: 256 HQEVYISTSIGISVYPYDGTDKETLIRMADRAMYQAKTNGRNQFVLYHDGMNNNGRHLFQ 315

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A +  E  L Y P + +  ++I  +EALI+W+H + G IS  +F+ +AEE  +
Sbjct: 316 LETALRKAFDLGEFALYYQPQVDMKTKQIRAVEALIRWNHHEKGFISPGQFIPLAEESGL 375

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I+ +++ +   D+   + Q     + + INI+       +  E +Q  I     +P 
Sbjct: 376 ITPISDWIIMQACEDLKQLQWQFPY--VKMSINISPIYFQQIDFLEKLQKTIESVNVNPR 433

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES +M + E+S   L  L+ +GIS+ +DDFGT  S LSYL   P D +K + S
Sbjct: 434 SLELELTESAIMPHAEQSVGRLTTLKTMGISIAIDDFGTGFSSLSYLHRFPIDVLKIDQS 493

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +   +  ++ +AI+++II MA +++  ++A+ +  E   + L    CD++Q  +V++PL
Sbjct: 494 FIKQLSQYQEDLAIVKAIIMMAHSLQIQVVAEGVETEKQYQILEEQRCDFVQGYYVSNPL 553

Query: 945 GFNSILKLL 953
               + + L
Sbjct: 554 TIGELYEFL 562


>gi|257482140|ref|ZP_05636181.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1250

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 266/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 682  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 741  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 798

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 799  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 857

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 858  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 917

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 918  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 977

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 978  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1096

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1097 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+  +    
Sbjct: 1217 EHDCDEVQGYLFGRPMPASQFEA 1239



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 592

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 593 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 650

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 651 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 694



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 400 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 459

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 460 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 519

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 520 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 560



 Score = 37.6 bits (86), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 34/188 (18%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+     
Sbjct: 226 LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 285

Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459
                +V T  D   +L                            +    + W P I   
Sbjct: 286 QLEALQVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 345

Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            R        ++ + +     RL+ E  +  A  Q   + + +R +  S  D    I   
Sbjct: 346 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR-LPESRSDFDAVILSI 403

Query: 517 NDITEQKK 524
            DIT +K+
Sbjct: 404 GDITSRKQ 411


>gi|237746065|ref|ZP_04576545.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377416|gb|EEO27507.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Oxalobacter
           formigenes HOxBLS]
          Length = 895

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 156/576 (27%), Positives = 276/576 (47%), Gaps = 15/576 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           +++ ++ +  F+   F   ++  L       S + +   D     V       TI G + 
Sbjct: 315 LLKELVTSIDFALDNFDRKQQLQLSAQIFTQSNEGLMLLDSACHIVMVNKAFTTITGYSD 374

Query: 443 GSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               G   R      H  DRD +  + +    +  G  Q E   R  D  F+   + I+ 
Sbjct: 375 TEALGHNPRILSSGRH--DRDFYENMWNRIDKH--GSWQGEIWNRRKDGTFYPEWLSIQT 430

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           M +S G +  YIG+  D+TE+KK+ E +   A  D LTG+PNR    DR    + L+   
Sbjct: 431 MRDSFGKLTHYIGLFADMTERKKTEEKVQWLAHFDALTGLPNRTLLRDRSNLAISLAQRR 490

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +    +M +D+D +K +ND LG   GD++L     R+  +++  D ++R  G+ F ++L
Sbjct: 491 -HEPLALMFLDLDGFKNVNDSLGHNTGDELLKQFASRLKSVVREQDTVSRQGGDEFVLVL 549

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +  ++      A  +    A P ++   E+ +TASIG A + +  I    +  +A+ AM
Sbjct: 550 PN-TDTGGATSIAEKLLAIAAEPYHIEPHELNLTASIGIAMYPADGIDFDTLSCSADTAM 608

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y  K  G N+   F          M++ D  L  A+E  +  L Y PI+ L    IVG E
Sbjct: 609 YRTKQGGRNNYCFFTTEMQARSARMLELDSALRRALEREQFTLHYQPIMSLKHHIIVGFE 668

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP+ G +S  EF+ +AE    I  I  ++L  +   +  W D  +   I + +N
Sbjct: 669 ALLRWEHPQLGPVSPEEFIPVAESNGQIIPIGEWILRSVISQLRKWIDAGHEE-IMVSVN 727

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++    D  L + +  L+ +   SP R+ L  +E V M  P+ + +++  L++ G+ ++
Sbjct: 728 LSAIQFRDRRLSDMVSTLLKEAQVSPDRLVLELTEGVAMEKPDAAIVVVDSLKERGVKVS 787

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL      ++K +GS +       + +AI+ +I+ +AKN+    IA+ 
Sbjct: 788 VDDFGTGYSSLAYLKRFSAHSLKIDGSFIRNIPDDTENMAIVSAIVSLAKNLGIKTIAEG 847

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  E  I  LT +GC  IQ  +++ P+  ++    L
Sbjct: 848 VETEEHIAFLTEIGCTAIQGHYLSRPMTADAASDFL 883


>gi|297537222|ref|YP_003672991.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256569|gb|ADI28414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera sp. 301]
          Length = 1026

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 140/571 (24%), Positives = 268/571 (46%), Gaps = 13/571 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                F   +    E   L +  S D + + +     +  +     + G       G   +
Sbjct: 458  EREQFKGKLLESEEISRLVLENSLDAIINMNSDGLVIEWSGAAYKMFGYKREDALGQKLS 517

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             L  I + DR+     ++  +   +  +   + E     +D+    + + +  +    G+
Sbjct: 518  NL-IIPVRDREAHIKGMNRVIATNQSNMTGRRVEVSALRSDDTEIPVEMSVAKI--ETGN 574

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            ++ +     DIT++K+S   I   A  D LT +PNR    D     L L   ++  +  V
Sbjct: 575  LVFFSAFVRDITDRKESESQIQKLAHFDALTSLPNRILLQDHFKYALSLIKRNNG-KLAV 633

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            + +D+D +K IND LG ++GD +L+ + +R+   L+  D L+RL G+ F +IL    +S 
Sbjct: 634  IFLDLDHFKDINDTLGHSIGDLLLIEVAKRLQLTLREEDTLSRLGGDEFILILPG-TDSR 692

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              A+ A  +   +A P ++   E+TVT S+G A + +       + + A+ AMY AK  G
Sbjct: 693  GAANVAQKLLSIMAKPYHIDSFELTVTGSVGVALYPNDGTDFEILSQKADTAMYRAKQEG 752

Query: 689  GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             N+   F      +    + +   L  A+E ++L L Y P + L    ++G EAL++W H
Sbjct: 753  RNNYRFFTAEMQATSSRNLQLVNALRYALERNQLSLHYQPQVSLHQNCVIGTEALLRWHH 812

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            P+ G+IS +EF+ IAE+  +I +I  ++L +  +    W ++    P+ + +NI++    
Sbjct: 813  PELGSISPAEFIPIAEDSGLIISIGEWVLRQAVKQAKLWMEE-GHAPLIMAVNISAIQFR 871

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              +L   +  ++ +   +P  ++L  +E V M +P+ +  ++  L ++GI +++DDFGT 
Sbjct: 872  HPDLPNLVTQILEEIGLAPEYLELELTEGVAMYDPQAAIEMMNNLHELGIRVSIDDFGTG 931

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S LSYL       +K + S +       +  AI+ +II M+K++    IA+ +     +
Sbjct: 932  YSSLSYLKKFKVYKLKIDQSFVRDISTDPEDKAIVSAIISMSKSLGLQTIAEGVETVEQL 991

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L   GCD +Q    + P+      +  +E
Sbjct: 992  TYLRAQGCDEVQGYFYSKPMPAEQAEEYFRE 1022


>gi|330888757|gb|EGH21418.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. mori str. 301020]
          Length = 1258

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 266/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   +     V        + G     +   +   L  +
Sbjct: 690  QRRAEKDLRMAATVFEHSTSAILITNPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 748

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 749  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 806

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 807  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 865

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 866  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 925

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 926  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 985

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 986  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRCG 1045

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1046 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1104

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1105 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1164

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1165 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1224

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+  +    
Sbjct: 1225 EHDCDEVQGYLFGRPMPASQFEA 1247



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 541 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 600

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 601 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 658

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 659 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 702



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 408 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 467

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 468 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 527

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 528 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 568


>gi|330961617|gb|EGH61877.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. maculicola str. ES4326]
          Length = 1508

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   + + L  +
Sbjct: 686  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVRANEAFTRVSGYEVAQVVDQLPSMLT-V 744

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R I+       RG  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 745  EAEQEAHLRYIIRQL--SGRGTWEGEVRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 803  TDISERKASEDRIHRLAYFDALTHLPNRTLFQDRLYSALQQAERQQ-AWVGLMFLDLDRF 861

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L   +   +       
Sbjct: 862  KPINDSLGHAAGDRMLQEMATRLLACVDVNDTVARMGGDEFTLLLQQGSTREEALNRAIH 921

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ 
Sbjct: 922  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKNNF 981

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 982  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  +EF+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1042 LVPPNEFIPVLEELGLVVEVGDWVLTEACRQLKHWHQHKVRVP-KVSVNISARQFSDGQL 1100

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1101 GKRIATILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1160

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+       
Sbjct: 1221 EHNCDEVQGYLFGRPMPPKQFEA 1243



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P + +ILG +  
Sbjct: 537 IGIAKDITDQVASSQSLRDSEQRYRMLAESISDVIFSTDNQLRPNYVSPSVESILGYSPD 596

Query: 444 SMHGP--------------IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
            +                     +  IH          L S       RL + F    AD
Sbjct: 597 WILENGWAGAIATQQQLSGFYALMSRIHK--VLKKPKELASLRSEVTTRL-FLFDCLRAD 653

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +   + +R+  + + + +    +G+  DI++Q+++ + +   A 
Sbjct: 654 GRKIPVELRVVLVWDEHDNFEGILGVGRDISQQRRAEKDLRMAAT 698



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  +    D ++  D++  R + +       LG + 
Sbjct: 404 ILSIGDITSRKQIELSLQDRESFWSDVLRTVPDHLYVQDVLSQRMIYSNHHFGHTLGYSK 463

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H  D  +++ + L          LQ   R R  +N +    IR +
Sbjct: 464 PELKAMGEFFWEVLLHPEDAKSYQDMRLRQRHYGHNELLQSVLRFRDRENNWRCFDIREQ 523

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DIT+Q       + S +     A
Sbjct: 524 ALAWDAEHRVTRIIGIAKDITDQVASSQSLRDSEQRYRMLA 564


>gi|312963150|ref|ZP_07777635.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311282661|gb|EFQ61257.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 1283

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 265/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   + N L  +
Sbjct: 715  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSDVLDQLPNMLT-V 773

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R +L     ++    + E  ++  + + +   + I  + +  GD+  Y+   
Sbjct: 774  DEQQEAHLRYVLKQL--HQHSTWEGEVWLKRRNGEHYPAWVGITAVFDDEGDLASYVCFF 831

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL T L  +    +    +M +D+D++
Sbjct: 832  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSW-VVLMFLDLDRF 890

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L    N      +   
Sbjct: 891  KPINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRVNREMALNRAIH 950

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 951  VAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1010

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP+ G
Sbjct: 1011 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1070

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  +++    R + +W       P  + +NI+++   D +L
Sbjct: 1071 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNKVRVP-KVSVNISARQFSDGQL 1129

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++  T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1130 GTRIATILKDTGLPPACLELELTESILMREVNEALHILDSLKNLGLSIAVDDFGTGYSSL 1189

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     +  L 
Sbjct: 1190 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1249

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1250 EHGCDEVQGYLFGRPMPAHRFEA 1272



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      S+ +    +R  +      D++   D        +P +  +LG    
Sbjct: 566 IGVAKDITDQIEASESLRDSEQRYRMLAESISDVICSTDSRLALNYVSPSVNAVLGYDVD 625

Query: 444 SMHGPIRNWLPYI-HINDR-------DNFRTILDSFVGYRRGRLQYEFRV-----RAADN 490
            +      W   I +           +     L         R + + ++       AD 
Sbjct: 626 WVFKN--GWQSIIANPKQLAGIYSLMERVSRALGDVQALNTLRDEVQTQLFLFDCLRADG 683

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G     +G+  DI++Q+++ + +   A 
Sbjct: 684 RKVPIELRLVLVWDEHGAFEGILGVGRDISQQRRAEKDLRMAAT 727



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 3/111 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           I +  + +   +   LG     +      +    +H  D +++  +           +L 
Sbjct: 473 ISQRMIFSNHHLGHTLGYTKAELQQMGEYFWEILLHPEDAEHYHDLRQQQRQAGYCAQLH 532

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            + R R  +N +    IR + +  + +  + R IG+A DIT+Q ++ E + 
Sbjct: 533 CQLRFRHRNNAWRRFDIREQALARDKSSQVTRIIGVAKDITDQIEASESLR 583


>gi|83312428|ref|YP_422692.1| hypothetical protein amb3329 [Magnetospirillum magneticum AMB-1]
 gi|82947269|dbj|BAE52133.1| Hypothetical 1041 kDa protein in hypE 3'region [Magnetospirillum
            magneticum AMB-1]
          Length = 1510

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 153/573 (26%), Positives = 264/573 (46%), Gaps = 20/573 (3%)

Query: 402  SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457
               E+  LA      +G+ +   D   + +T       I G +   + G    +L    H
Sbjct: 945  HAEEQLRLAAKVFDRAGEAITITDSSGNIITVNDSFCRITGYSHQEVIGKNPRFLQSGKH 1004

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               +D +  +  S +    G  Q E   R  + + +   + +  + + NG ++ Y+ I +
Sbjct: 1005 --GKDFYDAMWRSLIEQ--GCWQGEIFNRRKNGEIYPEWLTVNSVRDENGSVVNYVAIFS 1060

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DI+  K S   I   A  D LTGIPNR   +DRL   +  +      +  V+ ID+D +K
Sbjct: 1061 DISAIKSSQRRIEFLATHDELTGIPNRSLLMDRLKHAVAQAKR-QKTKLAVLFIDLDNFK 1119

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             IND LG  VGD +L   T R+   ++  D LARL G+ F  +L    +  K+   A  +
Sbjct: 1120 VINDSLGHDVGDQLLKQATERLKHCVRDSDTLARLGGDEFVAVLTDV-SLEKVNSVAARI 1178

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
               +    ++ ++ + V+ASIG + +      S  +LK+A+ AMY AK RG N  + F  
Sbjct: 1179 VDFLGASFSINDKSLFVSASIGISVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQFFAD 1238

Query: 698  SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                    R+ ++  L LA+E     + Y P + +   E+VG EAL++W  P  G +S +
Sbjct: 1239 EMKVIALQRLTLETGLRLALETKSFRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEVSPA 1298

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+ IAE   +I AI   +   +   I  WR++    P  I IN+++  L D      + 
Sbjct: 1299 HFIPIAESCGLIGAIGETVFTMVLEQIAYWREKGLTVP-RIAINVSAHQLRDAGFAAKVG 1357

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            + +  +  S   I +  +ES +M   +  + +L     +G+ +++DDFGT  S LSYL  
Sbjct: 1358 SWLDSSGISSELIGIELTESALMERIDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYLKK 1417

Query: 876  IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P   +K + S + G        +I ++II M++ +   ++A+ +  E  +  L   GCD
Sbjct: 1418 LPIHELKIDRSFVDGIALERDDRSIAKAIIDMSRALGMRVVAEGVESEEQLGVLKEEGCD 1477

Query: 934  YIQDSHVASPLGFNSILKLLK-----ERFPLVK 961
             +Q      PL   +  K+++      R PL +
Sbjct: 1478 MVQGYLFHRPLSPEAFAKVIETGGKSSRKPLKR 1510



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 4/142 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + I    ER    +  S   V   D              + GL++  + G    
Sbjct: 817 DLVEAQEQIRESQERLLSIMNHSTSAVSLKDAAGRYEFINMRFEELFGLSAEEVIGKTDQ 876

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L      D        D  V  +   +Q+   +        W+     P+ +SNG +  
Sbjct: 877 QLFSR---DIAQLLRSRDLEVMGQLSAIQHLEEMVFPT-SKVWLDSVRFPIFDSNGVVRA 932

Query: 512 YIGIANDITEQKKSLEGILCNA 533
               + D+T +  + E +   A
Sbjct: 933 VCSQSTDVTMKHHAEEQLRLAA 954


>gi|311693697|gb|ADP96570.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [marine
           bacterium HP15]
          Length = 724

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/662 (22%), Positives = 286/662 (43%), Gaps = 27/662 (4%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
           +A + L    +     + +  +   +  V+++                  +R   D I+ 
Sbjct: 62  LALLDLRMPEVTGFDVMAHLAIGQPDCGVIVVSGESSF-----SAVSRALRRGALDYIRK 116

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
                 +L  +         + A  +    +          V  S DIV+  D       
Sbjct: 117 PFDPEELLATVESVIGKKSLLEAHEHIQMRLEKSEALHRYIVNSSPDIVFMLDQDGHFCF 176

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
               + ++LG     + G   ++   +   D       L             E R++   
Sbjct: 177 VNSKVESLLGYKPAELCGQ--HFRHILDDRDVTRGTLALKGPNITADNPRTLEVRLKTRG 234

Query: 490 NQF--HWMIIRIRPMS------------NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           ++       I   P+               +G+   Y G A D+TE+K++   I   A+ 
Sbjct: 235 SRRATRHFEITAFPIDPQTWPHSGNTQGGGSGNGATYYGTARDVTERKEAEAFINFQAYH 294

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNR  F DRL   +  +      +  VM +D+D++K IND LG A+GD +L ++
Sbjct: 295 DLLTRLPNRALFKDRLELAITHANR-GGQKLAVMFLDLDRFKVINDTLGHAMGDRLLQAV 353

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           T R+ + L+  D L+R  G+ F ++L S +N       A  +  ++  P  L + E+ V 
Sbjct: 354 THRLEKCLRKGDTLSRFGGDEFTLLLPSIHNHEDARQIAKKLIDALRAPFQLGDHEVFVG 413

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713
            SIG A +  +  T  ++++NA++AMYH K +G +    +  S     ++R+ ++ DL  
Sbjct: 414 VSIGIAIFPEAGETMDQLIQNADIAMYHVKGKGKDGYRFYSDSMSIDTANRLNLERDLRQ 473

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E  EL + Y P +      +VGLEAL++W HP+ G +   +F+ +AEE  +I  ++  
Sbjct: 474 ALERDELRVFYQPQVCSTTNRVVGLEALVRWQHPERGLLYPRDFLPLAEETKLIGQLSER 533

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L++  +D+  W  +     + + +N++   +      E +   +    +    +++  +
Sbjct: 534 VLDQACQDVGRWIQE-GHTHLRLAVNLSPIQVEHPRFVETLMQQVKAHNFPAGNLEIEIT 592

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+V+M + E+    L  L  +G+ + +DDFGT  S L+YL  +P  T+K + S +     
Sbjct: 593 ENVIMNDLEQISQKLRELAALGVRIAIDDFGTGYSSLNYLHRLPIHTLKVDQSFVKAIRS 652

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +    I+ +I+ MA  ++  I+A+ +  +  +  L  +GC  +Q            I +
Sbjct: 653 GDDGACIVNAIVAMAHGLKLEIVAEGVETDEQLDYLRSLGCHQVQGFFYGPARPAAEISR 712

Query: 952 LL 953
            L
Sbjct: 713 TL 714


>gi|312110709|ref|YP_003989025.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311215810|gb|ADP74414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 574

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 274/549 (49%), Gaps = 12/549 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
            +  S +     D     +   P    + G ++  + G   R     +H  D+  +  + 
Sbjct: 21  ILEYSSESTIVTDAQNRILFVNPAFEIVTGYSADEVIGKNPRILQSGMH--DKSFYEKMW 78

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           ++    + G  + E   +  D + +   + I  + +  G++  Y+ I +DITE K+++E 
Sbjct: 79  NAL--NQYGVWKGEIWNKRKDGELYLEWLTISAVKDQQGNVTNYVAIFSDITEHKRNMEQ 136

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR  F  RL +I+ +S   +     ++ +D+D++K IND LG  +G
Sbjct: 137 LTKLALYDPLTNVPNRYLFEKRLESIIRMSKKHNQ-SFALLFLDLDRFKNINDTLGHHMG 195

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L    +R+  +L+  D +AR  G+ F IIL +  +  +    A  + +S+  P N+ 
Sbjct: 196 DMLLKETAQRLNGMLRKQDTIARFGGDEFVIILPNLKHIREAVYMAENIIESLKRPFNVN 255

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
            +E+ ++ SIG + +         +++ A+ AMY AK  G N    +   +++       
Sbjct: 256 HQEVYISTSIGISVYPYDGTDKETLIRMADRAMYQAKTNGRNQFVLYHDGMNNNGRHLFQ 315

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A +  E  L Y P + +  ++I  +EALI+W+H + G IS  +F+ +AEE  +
Sbjct: 316 LETALRKAFDLGEFALYYQPQVDMKTKQIRAVEALIRWNHHEKGVISPGQFIPLAEESGL 375

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I+ +++ +   D+   + Q     + + INI+       +  E +Q  I     +P 
Sbjct: 376 ITPISDWIIMQACEDLKQLQWQFPY--VKMSINISPIYFQQIDFLEKLQKTIESVNVNPR 433

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES +M + ++S   L  L+ +GIS+ +DDFGT  S LSYL   P D +K + S
Sbjct: 434 SLELELTESAIMPHADQSVGRLTTLKTMGISIAIDDFGTGFSSLSYLHRFPIDVLKIDQS 493

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +   +  ++ +AI+++II MA +++  ++A+ +  E   + L    CD++Q  +V++PL
Sbjct: 494 FIKQLSQYQEDLAIVKAIIMMAHSLQIQVVAEGVETEKQYQILEEQRCDFVQGYYVSNPL 553

Query: 945 GFNSILKLL 953
               + + L
Sbjct: 554 TIGELYEFL 562


>gi|82701336|ref|YP_410902.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC
            25196]
 gi|82409401|gb|ABB73510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Nitrosospira multiformis ATCC 25196]
          Length = 1054

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/587 (25%), Positives = 262/587 (44%), Gaps = 19/587 (3%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
              + + F  I     +    Q       +Q+  +  + D +  + +             +
Sbjct: 470  EGLTVYFRDITERKESEQARQEAHVRIRQQASLLDKATDAIIVFGMDNCIEFWNQGAERL 529

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             G  S  + G     L     ++   F     + +    G  + E   R  D     +  
Sbjct: 530  YGWTSEEVMGREVEMLY----DNVAVFDEANRALLS--SGEWRGELAQRRRDQSMLNVEA 583

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                + N +G+      I  DIT++K +   IL  A  D+LTG+PNR+  LDRL   L +
Sbjct: 584  HWTLVRNDDGEPQAIFAINTDITQRKSAENEILHLALYDSLTGLPNRRLLLDRLGHALAV 643

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            SA +  +   ++ ID+D +K +ND LG  +GD +L  +  R+   ++  D +ARL G+ F
Sbjct: 644  SARNQRM-GALLFIDLDNFKLLNDTLGHDMGDLLLRQVAPRLSSCVRESDTVARLGGDEF 702

Query: 618  GIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
             +IL+ +          +I+     +R +   P NL      +T SIG A +     T++
Sbjct: 703  VVILMGDFGEDHDEALTQISTICERIRSAFIQPFNLDPYIHHITPSIGIALFNDQSQTTN 762

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            E+LK A+LAMY AK  G N +  F      +      ++ +L  + E +E  L Y   + 
Sbjct: 763  ELLKRADLAMYQAKASGRNAMRFFDPDMQAAMNARAILESELYKSWERNEFILHYQLQVD 822

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                 I+G EAL++W HP+ G +  SEF+  AEE  +I  +  ++LE     + SW  Q 
Sbjct: 823  --SRGIIGAEALVRWQHPRRGLLPPSEFIPQAEETGLILPLGEWVLETACNQLASWALQP 880

Query: 790  NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                + + +N++S      +  E + +++ +T  +P R+KL  +ES+++ + + +   + 
Sbjct: 881  ETVQLNLSVNVSSLQFCQPDFVEQVISILDRTGANPQRLKLELTESILVHDMDDTIAKMM 940

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
             L+  G+   LDDFG   S L YL  +P D VK + S +    +      I+R+I+ +AK
Sbjct: 941  TLKARGVGFALDDFGIGYSSLYYLKRLPLDWVKIDRSFVRDVLTDNNDATIVRTILLLAK 1000

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++   +IA+ +        L   GC   Q    + PL      + ++
Sbjct: 1001 SMGLAVIAEGVETGAQKDFLASHGCTAYQGYLFSRPLPLEQFERFVQ 1047



 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 17/190 (8%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +L+ +    + M          +          +   +   ++  +      ++ + +  
Sbjct: 321 LLVLLGGFVVSMLTAMV---SFVLSGNKEKAAALG-HVNKKLLLAMEEQQATTRELSNAK 376

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            R    +    D  +  D          +   +L      + G +  W  +         
Sbjct: 377 LRTERILESITDAFYTLDREWRFTYVNKEAENLLQRNREDLLGRVC-WEEFKETAGTTFD 435

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R    + +  R    +  +          W  +   P  +  G  +       DITE+K+
Sbjct: 436 REYHRALMENRTVTFEEFYVPLDE-----WFEVHAYP--SEEGLTVY----FRDITERKE 484

Query: 525 SLEGILCNAF 534
             E     A 
Sbjct: 485 -SEQARQEAH 493


>gi|283852651|ref|ZP_06369917.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
 gi|283571942|gb|EFC19936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
          Length = 827

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 149/579 (25%), Positives = 276/579 (47%), Gaps = 8/579 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  +         + +     +     S   +   D+ R+ V        + G  +  
Sbjct: 253 GTVVDITDRKRAEAALATQRAYFTQLFANSPQAIALIDMHRNIVDANKAFEALFGYRTAD 312

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G       +I      +    +   V   +  ++   R R  D +   + +   P+  
Sbjct: 313 IQG--FGMRAFIVPEHLLSECENMRCAVLAGKPVVRETVR-RHCDGRLIPVSMIGFPIEI 369

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G+    + I  DI+E+K   E I   AF D LTG+PNR  F DRL   L  +    + 
Sbjct: 370 A-GETQGIVYIYQDISERKAFEEQITHQAFHDALTGLPNRSLFADRLERALTRARRRGDS 428

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V++ID++K+K +ND LG   GD +LV + RR+   ++  D +ARL G+ F +IL   
Sbjct: 429 QYAVLMIDLNKFKGVNDTLGHQAGDQLLVEVARRLSGCVRSMDTVARLGGDEFAVILEEF 488

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               ++      +   +  P  L  + +T  ASIG    T     + ++L++A++AMY A
Sbjct: 489 KTKKEVMTVVERIGVGLGKPFVLCGKTVTPEASIGIVLHTRDYAAADDLLRDADIAMYRA 548

Query: 685 KHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           K +G   +   R       + + ++ DL  A+E  EL L Y PI+ + D  IVG EAL++
Sbjct: 549 KEQGRASMIFDRKMHQEILEAISLETDLRQALEAGELLLHYQPIVDVKDSRIVGFEALVR 608

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802
           WDHP  G +   +F+ +AEE  +I  +  F+++   R + +W+ +      + + +N++ 
Sbjct: 609 WDHPDRGLVPPGQFIPLAEETGLILPLGRFVIDEACRQLRAWQLEMPEAADLSVSVNVSC 668

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +  + + L E +  +++ T   P+ +KL  +ESV+M + E +   L RL+ +G+ + +DD
Sbjct: 669 RQFVKDGLVEHVAQVLAATGLPPACLKLEITESVLMHDAEHTARELNRLKALGVKIAIDD 728

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P D +K + S +   G   +   I++SII +A+++  T+IA+ +  
Sbjct: 729 FGTGYSSLSYLRQLPIDHLKIDRSFISGQGCDGESQEIVKSIISLARSLGLTVIAEGVEC 788

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
              +  L    CD  Q    + P+   +  +L+++   +
Sbjct: 789 PDQLDRLRLADCDKAQGFMFSRPVEATAAGRLIRQHPAV 827



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 77/244 (31%), Gaps = 37/244 (15%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLG 413
           W A      +  +    VG L    I     ++   +A+   ++    D ER        
Sbjct: 97  WAAGEGDAADVRVSQFPVGMLGDRPIT---CMLFRDIASRLLAEDRLRDAERKYRSIFEN 153

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDNFRTILDS 470
           + + ++        +     +A I G  +   M    R+    ++     RD+F   L +
Sbjct: 154 AVEGIFQTTPAGRYLEVNRTLARIYGFESVAEMREFFRDIRNQLYVDPRRRDDFVRELAA 213

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R     +E  +R  D    W+    R +  ++G    Y G   DIT++K++     
Sbjct: 214 HDQVR----DFESEIRKKDGTVIWISENARVVRGADGLPAYYEGTVVDITDRKRAEA--- 266

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID-----IDKYKKINDVLGI 585
             A Q        R  F               N    + +ID     +D  K    + G 
Sbjct: 267 ALATQ--------RAYFTQLFA----------NSPQAIALIDMHRNIVDANKAFEALFGY 308

Query: 586 AVGD 589
              D
Sbjct: 309 RTAD 312


>gi|192360999|ref|YP_001981756.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190687164|gb|ACE84842.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 772

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 137/574 (23%), Positives = 265/574 (46%), Gaps = 16/574 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +         Q +++     +  +  S  ++   D+  + V  +     +  +      G
Sbjct: 179 EQSERHRLAEQALWASETYLNAILHYSPALISVKDLDGNVVLASDHFKHMADIDESGFVG 238

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +  +   D       +D      +   + E  +   D   H  ++   P+    G
Sbjct: 239 KN---VFDVFPRDIAQSMWDIDIATKTNQQTYEVELDLMHKDGSLHTYLMVKFPLRGKEG 295

Query: 508 DILRYIGIANDITEQKKS-------LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     I  DI+E+K +          +   AF D LT +PNR  F DR+   L  +  
Sbjct: 296 KVFGVCTIGTDISERKLAENALREQQSRLNYMAFHDALTSLPNRSLFYDRIYHGLARARR 355

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             N R  +M++DID++K +ND LG   GD +L ++  R+ E ++  D +ARL G+ F ++
Sbjct: 356 S-NSRVALMLLDIDRFKIVNDSLGHDAGDILLKAIAMRLTEGVRDMDTVARLGGDEFVVV 414

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   ++   +   A  +  +++ P+++    I+ T SIG + +      + E+LKNA++A
Sbjct: 415 LEGIHDVDDVIFVANKLLATLSRPLDISGHSISATVSIGVSIFPEDGADTDELLKNADIA 474

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N+ + +   +++   + ++++ DL  A+E ++L L Y P I L   ++ G+
Sbjct: 475 MYKAKEAGKNNCQFYTKGMNATAVNYLLLENDLRRAIEQNQLALYYQPQIDLKTGDMTGV 534

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G +S + F+ +AEE  +I  I  ++L    +    W D        + +
Sbjct: 535 EALVRWQHPERGLVSPAHFIPLAEETGLIVPIGEWVLREACKQKKIWLDTGKNVG-KVAV 593

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ +          ++A++ +T      ++L  +ES  M +   +   L +L ++G  L
Sbjct: 594 NLSPRQFRQKNFPGKVEAILQETGLEAKYLELEITESCAMEHAGETINQLNQLNQMGTFL 653

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S L+YL   P   +K + S +    +     AI ++II +A N++  ++A+
Sbjct: 654 AIDDFGTGYSSLAYLQRFPIQKLKIDRSFIHDIHDDANDAAIAKTIIGLAHNMQLRVVAE 713

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +  E   + L   GCD +Q    A P+    + 
Sbjct: 714 GVETESQAEWLRAKGCDQVQGFLYAKPMTAKQLE 747


>gi|242277880|ref|YP_002990009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio salexigens DSM 2638]
 gi|242120774|gb|ACS78470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio salexigens DSM 2638]
          Length = 716

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 146/575 (25%), Positives = 263/575 (45%), Gaps = 16/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             A       +    E+  LA      S + V   D   +          I G +   + 
Sbjct: 143 RKAKDQLKITVDQQTEQLKLATAVFKHSSEGVTITDSNNNIRYINDAFTHITGYSEEEVI 202

Query: 447 GPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G   + L    H  +        + +      G  + E   R  + +     I I+ +++
Sbjct: 203 GQNPSILKSNRHKPSFYKGVWKSIKT-----NGMWEGEIWNRRKNGEVFPEWISIKAITD 257

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G+++ YI +  DI+E K S   I   A+ D LTG+PNR   +DR+   +  S+ D   
Sbjct: 258 VKGEVVNYIAVFRDISEAKASQRKIQHQAYHDALTGLPNRTLLIDRIRKAIA-SSNDRKS 316

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ ID+D +K IND LG  +GD VL     RI E +   D ++R+ G+ F I+L   
Sbjct: 317 CIALLFIDLDNFKNINDSLGYVIGDSVLQQAAARIREFIDEKDTVSRIGGDEFVIMLKDL 376

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +    A  A  +    A  + +   + T+T SIG A +     T   +++NA+ AM  A
Sbjct: 377 QDKHDAAVMADTIINLFAQALTVESHQFTITPSIGIALYPEDGKTPYSLVRNADTAMNKA 436

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F      S      ++  L     ++   + Y P + L D  IVG+EALI
Sbjct: 437 KQEGRNRYHLFTPGLTESALRRISMENQLRQTASDNGFTVYYQPKVNLHDNTIVGMEALI 496

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P    IS +EF+ +AEE  +I  I   +LE    D +    +     + + +N++ 
Sbjct: 497 RWIQPDGTIISPAEFIPLAEETGLIVPIGEQVLEAACLDTVELNQRFG-TNLKVSVNLSL 555

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     +L + +  +I+ T   PS ++L  +ES VM + E+++ +L ++ K+GI+L++DD
Sbjct: 556 RQFKQEQLMKNIMDIIAMTAICPSCLELEITESTVMDDIEQTKTILEKMDKLGITLSIDD 615

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS+L  +P  T+K + S + G    +    ++++I+ +A++ + + +A+ I  
Sbjct: 616 FGTGYSSLSHLKNMPMHTLKIDQSFVAGLPHNKSDQKLVKAIMSLARSFDLSTVAEGIET 675

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 +  +GC+ +Q  + + P+       L++ 
Sbjct: 676 PEQYNYMRELGCEVMQGYYYSPPVPLEEFAALIEA 710



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 10/179 (5%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  + D+    D     +   P      GL      G   +   +IH  D++      + 
Sbjct: 26  IENTDDLFTQVDTDGRFLYVNPSAQKYFGLPPEKCVG--LSIFDFIHPEDKETTAQDFNK 83

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +         Y  R    +  F++M+  I  + +S   IL +  I  DIT  K++ E + 
Sbjct: 84  WQKDPSTNFSYINRQMHLNGSFYYMLWTITAVKDSEQKILWFNCIGRDITSHKETEEELR 143

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI-DKYKKINDVLGIAVG 588
               +D L     + +   +   +   +A   +    V + D  +  + IND      G
Sbjct: 144 KA--KDQL-----KITVDQQTEQLKLATAVFKHSSEGVTITDSNNNIRYINDAFTHITG 195


>gi|104780040|ref|YP_606538.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109027|emb|CAK13723.1| putative sensory box protein(GGDEF domain/EAL domain) [Pseudomonas
            entomophila L48]
          Length = 1276

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 151/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   +   L   
Sbjct: 708  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVAEVLDQLPGMLTVE 767

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H  D  +   +L      +RG  + E  ++  + + +   + I  + +  GD+  Y+   
Sbjct: 768  HQQD-AHLGYVLKQL--NQRGSWEGEVFLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 824

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL T L  +         +M +D+D++
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYTALQQAER-QKAWVVLMFLDLDRF 883

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +        +   
Sbjct: 884  KPINDSLGHAAGDRMLKDMAERLLACVDNDDTVARMGGDEFTLLLQPKATRELALNRAIH 943

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 944  VAEHILDSLVTPFVLENREFFVTASIGIALSPQDGGELSQLMKNADTAMYHAKERGKNNF 1003

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP  G
Sbjct: 1004 QFYQADMNASALERLELESDLRHALEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  ++L    R + +W       P  + +NI+++   D +L
Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREACRQLKAWHKDKVRVP-KVSVNISARQFSDGQL 1122

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ +T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1123 GTRIATILEETGLPPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSL 1182

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ L 
Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  N    
Sbjct: 1243 EHGCDEVQGYLFGRPMPANQFEA 1265



 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D+   R+  +   +   LG   
Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVQSQRMIFSNRHLGQTLGYDR 485

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  ++R +         G  L  + R R  D  +    IR +
Sbjct: 486 AELAQMGERFWELLLHPEDAAHYRALRQQQQDTCHGQSLHCQLRFRHRDGGWRCYDIREQ 545

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +   S+G + R IG+  D+T Q ++ E + 
Sbjct: 546 VLTRASDGQVTRIIGVGKDVTVQIEASESLR 576



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 52/154 (33%), Gaps = 15/154 (9%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              S+ +    +R  +      D+++  D        +P +  +LG  +  +      W 
Sbjct: 569 IEASESLRDSEQRYRMLAESISDVIFSTDNQLRLDYVSPSVQAVLGYQADWIFAN--GWQ 626

Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQYE------------FRVRAADNQFHWMIIRIR 500
             I +         +++     +    Q              F    AD +   + +R+ 
Sbjct: 627 SIIANPAQLTGVYGLIERVSKAQGDTEQLAQLRATLPTQLFLFDCLRADGRKIPIELRLV 686

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + + +      +G+  DI++Q+++ + +   A 
Sbjct: 687 LVWDEHERFEGVLGVGRDISQQRRAEKDLRMAAT 720


>gi|302062495|ref|ZP_07254036.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato K40]
          Length = 1254

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 686  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 744

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 745  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 803  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 861

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 862  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 921

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 922  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 981

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 982  QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1100

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1101 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1160

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1221 EHGCDEVQGYLFGRPMPPKQFEA 1243



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 596

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 597 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 654

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 655 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 698



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +      +    +H +D  +++ + L          LQ
Sbjct: 444 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 503

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 504 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 563

Query: 533 A 533
           A
Sbjct: 564 A 564


>gi|284050110|ref|ZP_06380320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Arthrospira platensis str. Paraca]
          Length = 1091

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/561 (26%), Positives = 253/561 (45%), Gaps = 15/561 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP---YIHI 458
               +  S A   S   +   D   D     P    I G  +  + G     L        
Sbjct: 537  DQLKMFSRACDQSPVSIVITDSEGDIQYVNPKFEEITGYKAAEVMGQNPRILKSGYTTEP 596

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 +  +       ++     EF  +  + +  W    I PM +  G I  +I +  D
Sbjct: 597  E----YDVLWKQITSGKQ--WSGEFHNKRKNGELFWEHASICPMRDEEGYITHFIAVKED 650

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT+QK + E +   A  D LT +PNR    +RL   +  +  + +    VM ID+D +K 
Sbjct: 651  ITQQKHNEEILAHQANYDALTDLPNRTLIFERLRQAIIQAQVN-HSNVAVMFIDLDHFKN 709

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L     R+   L+  D + RL G+ F +I+ + ++ ++    A  + 
Sbjct: 710  INDTLGHELGDFLLKEAGMRLKGCLRTTDTVGRLGGDEFLVIIPNLDDLIQAEYIATQVL 769

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +  P NL   E  ++ASIG AS+      +S +++NA+  MY AK  G N    F  +
Sbjct: 770  GVLGEPFNLCGEEAFISASIGIASYPQDGNNASTLVRNADTGMYAAKQEGRNVFAFFTQN 829

Query: 699  SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +  I  +  L  A+   EL +VY P I L   +IVG EAL++W +P+ GNI   +
Sbjct: 830  MNDEAQSRIIIENHLRHAINRDELSVVYQPFINLATAQIVGAEALMRWYNPELGNIRPDQ 889

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  +  ++L +  +++  W  Q     +++ +N++ + L    L   +  
Sbjct: 890  FIAIAEESRLIVDLGEWILSQACQEVAIWHQQ-GNSGLWVAVNMSPRQLRTPNLVNVIIE 948

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             I+    S   ++L  +E  ++      + L+ +L  + I L +DDFGT  S LSYL   
Sbjct: 949  AIANNGLSSDCLELEITERSLVAEVPGVQSLIKQLHSLKIRLAIDDFGTGYSSLSYLKRF 1008

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            PF  +K + S ++     +  IA+++++I MA  +   ++A+ I     +  L   GCDY
Sbjct: 1009 PFSVLKIDKSFISDLPDDQDAIALVKTMITMAHGLGLVVVAEGIETSAQLDFLCNQGCDY 1068

Query: 935  IQDSHVASPLGFNSILKLLKE 955
             Q    + PL        L++
Sbjct: 1069 GQGYLFSKPLPPAEFRAYLQK 1089



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W  ++    +  +  +  ILG    ++     ++L +I+I+D  ++       +  ++
Sbjct: 316 GSWCLNMNTGEMIISDQLYHILGENPQNVSINFEDFLNHIYIDDLYSWVQTYSQSLFTQQ 375

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              +  +R+   D+  HW+  +  P+S+ +  I     I  +I   + +   I   A
Sbjct: 376 N-YRLNYRIIQPDSSMHWVSQQSTPVSDRHNKITHITSIIQEIDSHQIANPSITAEA 431



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 23/144 (15%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q    +      +     R    +  S + +   D     +   P    + G  +  + G
Sbjct: 421 QIANPSITAEAALRESEARLRTIISTSTNGLVVVDCQGRALFINPAAEALFGRQARELEG 480

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                                +        +   E  +   D +   + +R+  +S    
Sbjct: 481 ---------------------EMIGIPLVTKESTELEIFRHDGKLKIVRMRVVEISWE-- 517

Query: 508 DILRYIGIANDITEQKKSLEGILC 531
               Y+    DIT+ KK+ + +  
Sbjct: 518 QETAYLASLTDITDFKKTEDQLKM 541


>gi|24371741|ref|NP_715783.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24345524|gb|AAN53228.1|AE015464_10 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1077

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 159/673 (23%), Positives = 302/673 (44%), Gaps = 28/673 (4%)

Query: 294  AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
              L            ++  + +  +   +T  I     +   R+ +              
Sbjct: 410  ITLSMARQSDIQQHHALMLLGIYLLSALFTATITLWLGRKIIRSFMFKITQ--------- 460

Query: 354  LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
                I   +      P L   + +        + + +       Q       R +     
Sbjct: 461  ----IANDMQQMAADPQLNIHIDVSGSDELARMSRAMNRMLSERQKANQALSRAAAVFNY 516

Query: 414  SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFV 472
            S + +   D         P  + I G +   + G   + L    H     +F T +   +
Sbjct: 517  SAEGIMVTDADNHIELVNPAFSQITGYSLEDVKGRSPSMLSSKRHP---SHFYTAMWEAL 573

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +  + + E   +  D Q +   + I  + N  G+I+++IG+  DI+++K+  + +   
Sbjct: 574  -QKDSKWEGEIWNKRKDGQVYPEYLAITVVRNERGEIIQHIGLFMDISKRKQYEQDLWYQ 632

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D LTG+PNR+ F +RL   + L+  D   +  +++ID+D++K INDV G A GD +L
Sbjct: 633  AHFDTLTGLPNRKLFNERLQHEIQLAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLL 691

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              + +R+  +    D++AR+ G+ F +IL    N   I   A  + ++++ P NL EREI
Sbjct: 692  QDVAKRLENIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLSTPFNLNEREI 751

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKED 710
             ++AS G   +    +  S + +N E+AMY AK  G N+ + F   ++     R+ +++ 
Sbjct: 752  QISASFGIGVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAMFARMELEQR 811

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L  AV   E  L Y PI+ +   ++  +EALI+W  P  G I   +F+ IAEE  +I+ +
Sbjct: 812  LRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQFIGIAEETGLIEPM 871

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSR 827
              ++L +   D+  W+       + + IN++S+  ++       + +Q   ++   +P  
Sbjct: 872  GEWVLNQAMHDLRQWQQLGLQ--LNVAINVSSRQCVNARGMGFDQVLQECFNRHHINPRN 929

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            + +  +ES++MG+       L  +R++G  + +DDFGT  S LSYL   P   +K + S 
Sbjct: 930  VHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSF 989

Query: 888  MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +    S      ++++I+ M +++E  ++A+ I  E     L  +GC Y Q   ++ PL 
Sbjct: 990  VENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHYAQGYLISKPLP 1049

Query: 946  FNSILKLLKERFP 958
            F +I  LL +  P
Sbjct: 1050 FAAITPLLSQTLP 1062


>gi|120555138|ref|YP_959489.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120324987|gb|ABM19302.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 725

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 144/584 (24%), Positives = 266/584 (45%), Gaps = 22/584 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A       +          V  S DIV+  D           + ++LG     + G  
Sbjct: 137 IRAHEMVQSRLEKSEALHRYIVNSSPDIVFMLDETGHICFINNKVESLLGYQPSELCGQ- 195

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIRPMS---- 503
            ++   +   D       L             E R++   ++       I   P+     
Sbjct: 196 -HFRHILDDRDVARGTYALQGPNISADNPRVLEVRLKTRGSRKATRHFEITAFPVDPQTW 254

Query: 504 --------NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                      G   RY GIA D+TE+K++   I   A+ D LT +PNR  F DRL   +
Sbjct: 255 PQTGKTQGGCTGQPARYYGIARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLELAI 314

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +      +  VM +D+D++K +ND LG A+GD +L ++T R+ + L+  D L+R  G+
Sbjct: 315 THARRSQQ-KLAVMFLDLDRFKVVNDTLGHAMGDRLLQAVTHRLEKCLRRGDTLSRFGGD 373

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L S +      + A  +  ++  P  L + E+ V  SIG + +  +  T   +++
Sbjct: 374 EFTLLLPSIHGHDDARNIARKLIHALKAPFQLGDHEVFVGVSIGISVFPEAGETMDLLIQ 433

Query: 676 NAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA++AMYH K RG +    +  S     ++R+ ++ DL LA+E +EL + Y P +     
Sbjct: 434 NADIAMYHVKARGKDGYRFYSDSMSINTANRLSLERDLRLALERNELRVFYQPQVCSRSN 493

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VGLEAL++W HP+ G +   +F+ +AEE  ++  ++  ++++  RD+  W        
Sbjct: 494 RVVGLEALVRWQHPERGLLYPGDFLPLAEETRLVGKLSEQVIDQACRDVGRWISS-GHSD 552

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++   +      E +   ++   +    +++  +E+V+M + E+    L  L  
Sbjct: 553 LRLAVNLSPSQVEHPRFVETLMNRVAAHNFPADNLEIEITENVIMNDLEQISRKLKELAA 612

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + +DDFGT  S L+YL  +P  T+K + S +      E    I+ +II MA  ++ 
Sbjct: 613 TGVRIAIDDFGTGYSSLNYLHRLPIHTLKVDQSFVKAIRSGEDGACIVNAIIAMAHGLKL 672

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I+A+ +  +  +  L  +GC  +Q            I +LL +
Sbjct: 673 EIVAEGVETDDQLAYLKSLGCHQVQGFFYGPARPAADITRLLAK 716


>gi|212639188|ref|YP_002315708.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus
           flavithermus WK1]
 gi|212560668|gb|ACJ33723.1| Multidomain signal transduction protein (contains PAS, GGDEF and
           EAL domains) [Anoxybacillus flavithermus WK1]
          Length = 594

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 143/550 (26%), Positives = 273/550 (49%), Gaps = 11/550 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTIL 468
            +  + + +   D     +   P   T+ G     + G         +H  DR  +  + 
Sbjct: 44  IIQEADEGIIVTDSEGHILLANPAFETVTGYTQEEVLGKKPNILRSGLH--DRKFYENMW 101

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           ++   +  G  + E   +  + +     + I+ + +  G+   Y+ I +D+T+ K+++E 
Sbjct: 102 ETIRDH--GVWKGEIWNKRKNGELFVEWLTIKAVYDVAGNPTHYVAIFSDVTQHKRTMEQ 159

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   +  D LT +PNRQ F  RL  +LD +   +  +  ++ +D+D++K IND LG   G
Sbjct: 160 LARLSNYDLLTNVPNRQLFTKRLQHLLDTARRYNQ-QLAILFLDLDRFKYINDELGHYSG 218

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  +  R+ +LL+  D LAR+ G+ F +IL    +  +    A  + +S+  P  L 
Sbjct: 219 DILLQKVANRLKKLLRTKDTLARIGGDEFVVILPKLKDIQEAVSIAEQIIESLQAPFLLH 278

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRVMI 707
            ++I ++ASIG + + +       +L+ A+ AM  AK  G N  E +     ++S+ V +
Sbjct: 279 HKDIYISASIGISVYPNDGDDGEMLLRRADRAMQKAKESGRNRFELYTAKLDYQSEVVTL 338

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+E +EL++ Y PI+ +  ++I  LEAL++W  P  G +S ++F+ +AEE  +I
Sbjct: 339 ENYLRKAIERNELFVCYQPIVNIKTKKIEALEALMRWKQPNIGFVSPAQFIPLAEETGLI 398

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++ E+    I +    A    + I INI++     ++  + +  ++ K    P  
Sbjct: 399 VPMTKWLFEQACVHIKAIHQFAPH--VKIGINISAVHFQQDDFVQQLSTIVKKHDVHPRF 456

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            KL  +ES +M N E S   L +L++ G  L +DDFGT  S LSYL   P D +K + S 
Sbjct: 457 FKLELTESTIMPNAEESVQKLVQLKQCGFKLAIDDFGTGFSSLSYLHRFPIDILKIDQSF 516

Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   +       I+ +II MA ++  +++A+ +  E   + L +  CD  Q  ++A P+ 
Sbjct: 517 IRRLSLYSDDATIVSTIIMMAHHLHLSVVAEGVETEQQYEFLNKQQCDMAQGYYIAKPMP 576

Query: 946 FNSILKLLKE 955
            + + + ++E
Sbjct: 577 IDEVQQFVQE 586


>gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151281061|gb|ABR89471.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 910

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 150/589 (25%), Positives = 279/589 (47%), Gaps = 16/589 (2%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTT 431
            +L+ +    TV        +  Q   +    +  A+  S + V                
Sbjct: 318 ALLVSLAQRVTVEIRAHRDRHGRQAAEAALRLRERAIECSANAVIISSAQVPEFAIEYVN 377

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADN 490
           P    I G  +    G   ++L     ND +      + + +  +R   +   R    + 
Sbjct: 378 PAFERITGYTAAEAIGRSSSFLLR---NDHEQAGLYEIRAALAEKREG-KAVLRNYRKNG 433

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  + I P+ +  G    ++   +DIT  K+    +   A  D LTG+PNR    DR
Sbjct: 434 SLFWNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDR 493

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   +  SA + +    V+++D+D++K +ND +G   GD +L  ++ R+   ++  D +A
Sbjct: 494 LENAIAYSARNGHA-VWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVA 552

Query: 611 RLSGNRFGIILISENN--SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           RL G+ F ++L    +  S   +D    + +++  P+ +   E  ++ S+G A + +   
Sbjct: 553 RLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGA 612

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
             + +L +A++AMY +K  G N+ + +   ++    +R+ I+ +L  A+E +EL L Y P
Sbjct: 613 DPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQALERLRIEGELRHAIELNELVLHYQP 672

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + L    IVGLEAL++W+HP  G +    F+ +AEE  +I  I  ++L+   R   +W+
Sbjct: 673 QVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAKAWQ 732

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D      + I +N++++      L E ++  + +T      +++  +ES VM + ER+ L
Sbjct: 733 DM-GFTQLRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEIELTESSVMADIERNIL 791

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIP 904
            L  L+ +G+ L++DDFGT  S L+YL   P DT+K + S +      +   +I+ SII 
Sbjct: 792 TLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSSIIS 851

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A N++  +IA+ +     +  L   GC+ IQ  +   PL  + I  LL
Sbjct: 852 LAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLPSDQIETLL 900



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 411 VLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           +L +  IVW   I     +  +  +  + G +    +   R WL  I   DR+    +L 
Sbjct: 51  LLAADKIVWVLRIPDGQVIYASKTVEALYGSSPERFYANSRLWLENIAPADREPALELLG 110

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK----- 524
           S +   +  L+   R+  +D    W+    R + +++G       I  DIT +       
Sbjct: 111 SILHEPQQTLR--LRINRSDGSPRWIEYHARFIPDTDGRSGHVKLIGTDITTRHHLEIAL 168

Query: 525 SLEGILCNAFQD 536
           +       A  D
Sbjct: 169 ARSNRALRAIHD 180


>gi|291613649|ref|YP_003523806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583761|gb|ADE11419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 837

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 165/787 (20%), Positives = 326/787 (41%), Gaps = 43/787 (5%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
           V + +  +L +               +A  +L    +D             +   +    
Sbjct: 56  VIAAMVAYLLLRLHAIGEGS-SFNHQIAAALLAMSGLDGLHAMM------PDGESFVWLH 108

Query: 258 EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI-----AR 312
            +A +   ++F  ++L  + +   + +   +     A +   S   P     +       
Sbjct: 109 SLATAFGGLLFAMIWLPGHWFKPVMRHWPLNAFLMAAAMGIYSILQPGQIPQMLASGQFT 168

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAW-ILIFIWFIGLWMAITKRLDNDII---- 367
                + +    F++   +K +        +  +L F   + L  A    + + I     
Sbjct: 169 QAAVIMNIGGGLFLLLAAVKLFLTYRHSAKSEDLLFFFQCLILASAAITFMQSSIWDMPW 228

Query: 368 -------QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE---RQSLAVLG--SG 415
                         L L+V        + +L+     Q I    +   +  +A     + 
Sbjct: 229 WGWHMQRLAGYTLTLWLVVKTAKTIEGKTLLSNRLLKQQIEDRKQAENQLRIAATAFETH 288

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           + +   D   + +        I G +   + G     L        + +  +    +   
Sbjct: 289 EAIMITDAHANIIRVNQAFQNITGYSPEDVIGKNPRVLSS-GRQGSEFYAAMWKRLL--G 345

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G    E   +  + + +   + I  + ++ G    Y+ I +DIT +K + E I   AF 
Sbjct: 346 SGSWTGEIWDKRKNGEVYPKWLTITAVKDNEGVTTEYVAIFSDITLRKHAEEEIYTLAFY 405

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT +PNR+  LDR+     +SA  ++    ++ +D+D++K +ND LG   GD  LV +
Sbjct: 406 DSLTKLPNRRHLLDRINQARSISARSNHY-GALLFLDMDRFKILNDTLGHDYGDLFLVEV 464

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLER 650
           +RR+   ++  D +AR+ G+ F +++       +     +A  A  +R ++  P  L ++
Sbjct: 465 SRRMRNCVRDMDTVARIGGDEFVVLIEEIGTDNEEVSTKVALIAEKIRAALTEPYLLKDK 524

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIK 708
           E   + SIG   +  ++ +   +L++A+LAMY AK  G N V  F  +       R  ++
Sbjct: 525 EHHSSPSIGVCLYLGNEESVDTLLRHADLAMYQAKESGRNGVRFFDPAMQLAVETRAALE 584

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            D+  AV   +L L Y   +   D   +G EALI+W HP  G +S ++F+ IAEE  +I 
Sbjct: 585 ADMRHAVTGKQLRLYYQIQL-TSDHRPLGAEALIRWMHPVRGLVSPAQFIPIAEESSLIL 643

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++LE   + ++ W        + + IN++++    ++  + +  L+     +P+R+
Sbjct: 644 EIGHWVLETACKQLVLWSKHERTRNLILAINVSAQQFNKHDFVDTVSTLLHLHQLNPNRL 703

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           KL  +ESVV+ +       +  L+ +G+ L LDDFGT  S LSYL  +P D +K + S +
Sbjct: 704 KLELTESVVLSDVADVVSKMHALKALGVKLALDDFGTGYSSLSYLKQLPLDQIKIDRSFV 763

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +   +      ++++II +A N    +IA+ +  E  +  L + GC   Q      P+  
Sbjct: 764 SDVTTDPSDAVMVQTIINLAHNFRMNVIAEGVETEDQLNFLKQNGCMAYQGFLFGKPMPI 823

Query: 947 NSILKLL 953
           +    LL
Sbjct: 824 DEFEALL 830


>gi|220908932|ref|YP_002484243.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219865543|gb|ACL45882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Cyanothece sp. PCC 7425]
          Length = 1051

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/582 (25%), Positives = 277/582 (47%), Gaps = 9/582 (1%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            +I   +I  +         +     R  L      D+V   D+    +  +P   T+LG 
Sbjct: 469  VIWDGLIIDISDRKQVEVALQESEARYRLLAENMNDLVCLHDLEGHYLYVSPSCETLLGY 528

Query: 441  ASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                M G +     + H +D+   ++      +      +   +R+R     + W     
Sbjct: 529  RQDEMLGQVP--FNFFHPDDQGRIYQEAFIPALSGEPRPI--TYRMRQKSGNYIWFETLT 584

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            +P+    G I++    + D+TE+ +  E +  +A  D LTG+PNR   ++RL   +  + 
Sbjct: 585  KPIFGQTGQIVQLQTTSRDVTERIQVQEQLKYDALHDALTGLPNRLLLMERLELAIHRAQ 644

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                    V+ +D+D++K IND LG   GD +L ++  ++   L+  D++ARL G+ F I
Sbjct: 645  RLPGYHFAVLFLDLDRFKIINDSLGHLAGDQLLTAVAEKLCSTLRDIDLVARLGGDEFVI 704

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L    +  +I  F   +   + +PI +   E+ +TASIG          +S +L+NA++
Sbjct: 705  LLEEVKDIQEIIKFVDEIFAGLQIPILIAGCEVYITASIGIVFSDDKPAQASHLLRNADI 764

Query: 680  AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK +G +  E F +       +R+ ++ DL  AVE  EL L Y PI+ L    IVG
Sbjct: 765  AMYRAKAKGKDRYEIFNMEMHAQALNRLHLENDLRRAVERQELILHYQPILALDTGHIVG 824

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++W HP  G    ++F+ +AEE  +I  I+++ +      +  W+       + + 
Sbjct: 825  FETLVRWKHPIQGLKFPADFIAMAEETGLITHIDIWAISMACHQLAKWQAAFPGTKMKVS 884

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            +N+++ DL  + L E +  ++++       + L  +ES+++ + E +  LL +L++ G+ 
Sbjct: 885  VNLSAHDLRRSNLLEDIDNVLAQANIDGCCLCLEITESMLIEDIESTIKLLNQLKERGVQ 944

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            + +DDFGT  S LSYL  +P D++K + S +       +   I+ +I  ++ ++    IA
Sbjct: 945  ILIDDFGTGYSSLSYLHRLPVDSLKVDRSFVNQIQVDNRNAKIVETIASLSVSLGLDAIA 1004

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            + I     +K L ++G  + Q    + PL    +  LL  ++
Sbjct: 1005 EGIETPKQLKRLQKLGYKFGQGYLFSQPLTHKEVEILLGSQY 1046



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 12/205 (5%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD--NDIIQPALVGGLVLIVILIGFTVI 387
             +    A LLIP  I   +W      A+ +     ++ +Q A      L V +    + 
Sbjct: 281 LARDTPGAWLLIPLVIEGQLWGSFTVTAVQRPFTWNHNQVQLAQAVAAQLEVAIHQANLY 340

Query: 388 QHVL----ATGYFSQGIFSDGERQSLAVLGSGDIV----WDWDIVRDRVTTTPDIATILG 439
           Q +             +     R          I+    +  D        +     + G
Sbjct: 341 QQLQMELAERCQAEAALRESESRFQNIAANIPGIIYGYRFCADGSDQFTYISSGFCEVYG 400

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                            H +D +  +  +       + R + ++RV     Q  W+    
Sbjct: 401 FEPDEALQDSSIIWQMTHPDDLERLKQSVIESYQTLQ-RWRCQYRVMTPAGQLKWLEGVS 459

Query: 500 RPMSNSNGDILRYIGIANDITEQKK 524
           RP    NGD++ + G+  DI+++K+
Sbjct: 460 RPTRQPNGDVI-WDGLIIDISDRKQ 483



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 15/125 (12%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG---------SMHGPIRNWLPYIHINDR 461
           +  +   +   D             TIL +             +    R     ++    
Sbjct: 48  LDATPIGIAVHDATGQLTYINQAGQTILSIDRAYQVSTDQLSEVFQVYRQGTQKLYPA-- 105

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           ++  + L +  G   G    E        Q   + +   P+ ++ G++   I    DI+ 
Sbjct: 106 ESLPSTL-ALAGQVVGVDDLEL---HRRGQVIPLEVWASPIFDAQGEVTHTIATFQDISA 161

Query: 522 QKKSL 526
           +++  
Sbjct: 162 RRQLE 166


>gi|109900259|ref|YP_663514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
 gi|109702540|gb|ABG42460.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
          Length = 965

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 162/951 (17%), Positives = 339/951 (35%), Gaps = 31/951 (3%)

Query: 15  FLILVLFLLWMVSPSFA-IEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR 73
            ++L++  L +V  +      +NI+ S   ++L + +   V      Q+    ++     
Sbjct: 13  LMLLLIMQLGLVLKAQTTQTSVNINDSTPSVNLITSSHWLV-ADNKVQLSDVQELKTWRD 71

Query: 74  RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI-ISVTP 132
                  +      W    L+  S+      I + + R+     +  D   R I      
Sbjct: 72  TFSPQPLNDNQS-LWGRVTLSTDSNH-RPFFISIDNPRIDALDIYVLDERDRIINSYRLG 129

Query: 133 SEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSFTL 190
           +     +R       V  + I         ++I    P +    +             + 
Sbjct: 130 TTRPHDNRPFEHRLFVVPVDIPYAQPRNIYIKIRDEGPLVFAFDVKSETALIQKEQRNST 189

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250
              +  G  +++ ++  I Y + RS      F  +     Y+ + F     +V+  +G  
Sbjct: 190 IFSLFSGALTMMVLYFLITYTLLRS---PVRFWFSVASTAYLLL-FLNSQGVVSHVTGFN 245

Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
                 S I  +  L     +     R            +  ++               +
Sbjct: 246 QYIDNLSTILCALLLFSLAKITFTIFRPLPTYYRYFLYAMGWLSAASAFVLNSYQQILLV 305

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-----ND 365
           +  +++SIV+     I Y          +      LI +  +         +      + 
Sbjct: 306 SGASISSIVVIAVLAIFYRYKGHTISNRVFALGLTLISLTTVAHIGLYLNWVAFPEQLSL 365

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            +   +V G+VLI + I               Q      ++       + +  +   +  
Sbjct: 366 TLSTLIVIGIVLIAVAIAAHEKVIAFRHYNEQQTSIRALQQFVDMFEEAPEGRFISSLDG 425

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEF 483
             +     +A I G    +        +  ++   N+R+     L       +  L  E 
Sbjct: 426 QLLRANLAMAKIFGYEDVAQMKAHLPTMSALYAEPNERELLLGELHK----NQSTLSKEL 481

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R R   NQ  W+ +  +   N + D     G   DI+ +K   + I   A  D LTG   
Sbjct: 482 RGRTRQNQDLWLSVSAQLSKNGDTDEKLICGSVVDISARKSDHQSIEYMASHDTLTGFYQ 541

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           RQ+F   L   +  +        T++ ++ID++K IND  G   GD VL  L++ + +++
Sbjct: 542 RQAFEKSLHEAILFAKQQQE-ELTLLHVNIDQFKAINDTHGHKAGDAVLRQLSQLMKKIV 600

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               ++ RL G+ FGI+L+  N           +           ER +T+  SIG   W
Sbjct: 601 SDDGMIGRLGGDEFGILLVGNNAQNSFMLANKLLNAVQVHEFTWEERPLTLGVSIGQVPW 660

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCLAVENSE 719
             +  +S ++L  A+ A Y AK  G N + ++  +  +      ++     +  A+ ++ 
Sbjct: 661 NDTISSSEQLLSMADSACYMAKKHGRNRLHTYSSTDKQIAKYESQLSWLPRIQHALSHNG 720

Query: 720 LYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
             L   P + +    +    E L++        I  SEF+  AE   +   I+ ++++  
Sbjct: 721 FELHCQPYMPMTSIAKGHHYEILLRLVDEHDQRILPSEFLPAAERYNLSAKIDRWVIDTY 780

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +           +   IN++   L + +L   + +   K     ++I    +ES+ +
Sbjct: 781 FAWLAQNPQHKADL-MRCNINLSGHSLGEQDLKLFILSAFEKYQVPHNKICFEITESMAI 839

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
              + +   +   + +G +  LDDFG+  S  +YL  +P D VK +G  +         +
Sbjct: 840 LKLDETIEFIDTFKALGCTFALDDFGSGFSSYNYLKNLPVDQVKIDGEFVKNILIAPVDM 899

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           A++ SI  +A  ++   +A+ +  +  + EL ++G D++Q   V  P+  +
Sbjct: 900 AMVNSIKDIASAMKIQTVAEYVESKEIMVELGKIGVDFVQGFGVNKPISLS 950


>gi|170079056|ref|YP_001735694.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886725|gb|ACB00439.1| two-component response regulator (ABC transporter) / (GGDEF domain
           protein) [Synechococcus sp. PCC 7002]
          Length = 868

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 137/597 (22%), Positives = 269/597 (45%), Gaps = 10/597 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
             +I       L   ++   +++ + +         +    +R +         ++  ++
Sbjct: 266 FSLIVYLPFLFLGWFILR-NYSLKKEIKRRNQIETNLLESQQRYANLANTVSIGIFRTNL 324

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             + +        +L +           WL  ++ +D D  R      +  +      E+
Sbjct: 325 RHECIYVNDYYCKLLAIQPEEALHK--GWLEKVYPDDIDYVREQWLKSITNQ-ELFTLEY 381

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R + +D    W+  +     +S G+   Y+    DI+ + K  + +  +A  D LTG+ N
Sbjct: 382 RFQRSDGSILWVYGQGTAELDSKGEPQGYVATITDISTRIKMEQQLKHDALHDRLTGLAN 441

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R   ++RL   L             + +D+D +K +ND LG  VGD++L+ +   +   +
Sbjct: 442 RNLLIERLNLALKRYKRYPIHEFAALFLDLDNFKVVNDSLGHVVGDELLIEVAHLLKSFI 501

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D+ ARL G+ F I+L   +        A  +  ++ MP  +    + +T SIG    
Sbjct: 502 RDTDVAARLGGDEFVILLEEIHGVEDAVHIADRILNALNMPFQISNYGVFITTSIGIIIG 561

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721
            S   ++ ++L++A++AMY AK  G +    F          R+ ++ ++  A+E  +  
Sbjct: 562 DSRHESAQDLLRDADIAMYRAKQNGKSQYAIFDPQMHLQAMQRLQLEGEIRSAIEEKQFV 621

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y PII L    I G EALI+W HP+ G +S  EF+ +AEE  +I  +  ++L+   R 
Sbjct: 622 LYYQPIINLEQGNIEGFEALIRWQHPQRGLLSPYEFIDVAEETGLIIPLGEWILDAACRQ 681

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W+      P+ + +N++ K L D  L   +  L+ +    P+ + L  +ES+++ N 
Sbjct: 682 LFEWQQAF-KTPLKVHVNLSVKQLQD-SLLFSLDRLLERYPVFPNTLGLEITESMLIQNI 739

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAIL 899
           + +  LL ++R  G+ +++DDFGT  S LSYL  +P D +K + S +  +   ++   I 
Sbjct: 740 DITCRLLNQIRLKGVFISVDDFGTGYSCLSYLHQLPIDALKIDRSFVNISELNDRNRVIA 799

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            SI+ ++K+I    +A+ I  +   + L    C + Q    + P+  +    LL+  
Sbjct: 800 ESILALSKSIGIKTVAEGIETKQQYQWLKSQDCQFGQGYLFSRPVSLDQATDLLQGH 856


>gi|152998292|ref|YP_001343127.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Marinomonas sp. MWYL1]
 gi|150839216|gb|ABR73192.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas sp. MWYL1]
          Length = 734

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 147/586 (25%), Positives = 280/586 (47%), Gaps = 15/586 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +       Q +         +     R + A+  +   +W+W++ +D    TP   T+LG
Sbjct: 147 LFSSVGYAQKITPFKERESELIDAEIRVNEALKLTKVGIWEWNVDKDIWFATPSYFTMLG 206

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMII 497
            A        +  L  IH  DR +    +++ +  +      +Y+ R+R  D  + W+ +
Sbjct: 207 YAPVEGMADRKAELEKIHPEDRQHVMDSVNNILTSKSESNYYKYQARIRHIDGNYRWIGV 266

Query: 498 RIRP-MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           R      +      R +G+  DI E +K+ + +   A  D+LT +PNR +       I+ 
Sbjct: 267 RCIVTEFDQEDKPARMLGVRIDIDEIQKAHDQVEWLAHHDSLTKLPNRVALNKTFHKIIK 326

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 N +  ++ ID+D +K +ND LG ++GD +L+++  R+  L+     +AR  G+ 
Sbjct: 327 -----PNTKIALLFIDLDHFKNVNDTLGHSIGDQLLLTVADRMRTLVNNIGYVARQGGDE 381

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L ++N    I     A++++++   N+ + +  +T SIG + +  +      + + 
Sbjct: 382 FIILLPADNEECLIEKTC-AIKEALSARYNIDQHQFFITPSIGVSLYPRNGEDFDTLYQR 440

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMYHAKH G N    F           +     L  A+E  E  L Y P I L+  +
Sbjct: 441 ADAAMYHAKHTGRNRYAFFTEEMQAISTRALTLGNALHDAIERQEFSLHYQPQISLITGK 500

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G EALI+W   + G++S  EF+ +AEE   I AI  ++L   AR +  W ++  + P+
Sbjct: 501 IIGAEALIRWHSLELGHVSPGEFIPLAEENGQILAIGEWVLRETARQLKQWLEE-GITPV 559

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++      N+L   ++A++++       ++L  +E +   +PE +  +L   +++
Sbjct: 560 RIAVNLSYAQFQVNDLPSIVEAILNEYAVPAQYLELELTERIATKDPEHTITILESFQQL 619

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           GI  ++DDFGT  S LSYL   P   +K + S +           I+ +II +A+ +  T
Sbjct: 620 GIHTSIDDFGTGYSSLSYLQRFPVYKLKIDQSFVRNMTTNTNDQVIVGTIILLAQQLGMT 679

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957
            IA+ +  +  ++ L  +GCD IQ  +++ P+      +  L+++ 
Sbjct: 680 TIAEGVETKAQLEMLYNIGCDDIQGYYISRPIPAEEFKIGFLQKKQ 725



 Score = 41.1 bits (95), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 4/161 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
             I+   L    +LI I +   +           +   +   + + ++    D +W  D 
Sbjct: 6   GTILGYFLALCFLLIFIYVYIRIKVERNILFQQLEHAENYKNQLTSSLDALSDPMWIKDK 65

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            +  +   P     +GL+   + G     +   H       + I+ +           E+
Sbjct: 66  DQTYIYCNPAFEQFIGLSKLEIIGYKDEEIQSQH---VQLSQNIIPAITSNEETGATEEY 122

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            V        +  +    + + +  +   +G A  IT  K+
Sbjct: 123 -VCLPCGNVDYFQVSTERIYDISDQLFSSVGYAQKITPFKE 162


>gi|229592709|ref|YP_002874828.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas
            fluorescens SBW25]
 gi|229364575|emb|CAY52459.1| putative putative sensory box GGDEF/EAL domain protein [Pseudomonas
            fluorescens SBW25]
          Length = 1283

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G     +   + N L  +
Sbjct: 715  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYEVSDVLDQLPNMLT-V 773

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R +L     ++    + E  ++  + + +   + I  + +  GD+  Y+   
Sbjct: 774  DEQQEAHLRYVLKQL--HQHSTWEGEVWLKRRNGEHYPAWVGITAVFDDEGDLASYVCFF 831

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL T L  +    +    +M +D+D++
Sbjct: 832  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSW-VVLMFLDLDRF 890

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L    +      +   
Sbjct: 891  KPINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRISREMALNRAIH 950

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 951  VAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1010

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A++ +E  L Y P      + + G EAL++W HP+ G
Sbjct: 1011 QFYQADMNASALERLELESDLRHALDQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1070

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  +++    R + +W       P  + +NI+++   D +L
Sbjct: 1071 LVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNKVRVP-KVSVNISARQFSDGQL 1129

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++  T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1130 GTRIATILKDTGLPPACLELELTESILMREVNEALHILDSLKNLGLSIAVDDFGTGYSSL 1189

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     +  L 
Sbjct: 1190 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1249

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  N    
Sbjct: 1250 EHGCDEVQGYLFGRPMPANRFEA 1272



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      S+ +    +R  +      D++   D        +P +  +LG    
Sbjct: 566 IGVAKDITDQIEASESLRDSEQRYRMLAESISDVICSTDSQLALNYISPSVNAVLGYDVD 625

Query: 444 SMHGPIRNWLPYI-HIND-------RDNFRTILDSFVGYRRGRLQYEFRV-----RAADN 490
            +      W   I +           +     L       + R + + ++       AD 
Sbjct: 626 WVFKN--GWQSIIANPQQLTGIYSLVEQVSRALGDIEALNKLRDEIQTQLFLFDCLRADG 683

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G     +G+  DI++Q+++ + +   A 
Sbjct: 684 RKVPIELRLVLVWDEHGAFEGILGVGRDISQQRRAEKDLRMAAT 727



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  V    D ++  D++  R + +   +   LG   
Sbjct: 433 ILSISDITSRKLIELSLVERESFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGHTLGYNK 492

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H  D +++  +           +LQ + R R  +NQ+    IR +
Sbjct: 493 AELQQMGEYFWEILLHPEDAEHYHDLRQQQRQVGYTTQLQCQLRFRHRNNQWRRFDIREQ 552

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  + +  I R IG+A DIT+Q ++ E + 
Sbjct: 553 ALARDKSAQITRIIGVAKDITDQIEASESLR 583


>gi|301383265|ref|ZP_07231683.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato Max13]
 gi|302133478|ref|ZP_07259468.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            tomato NCPPB 1108]
          Length = 1250

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 682  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 740

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 741  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 798

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 799  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 857

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 858  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 917

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 918  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 977

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 978  QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1096

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1097 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1217 EHGCDEVQGYLFGRPMPPKQFEA 1239



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 592

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 593 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 650

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 651 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 694



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +      +    +H +D  +++ + L          LQ
Sbjct: 440 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 499

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 500 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 559

Query: 533 A 533
           A
Sbjct: 560 A 560


>gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans]
 gi|133738226|emb|CAL61271.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Herminiimonas arsenicoxydans]
          Length = 710

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 157/574 (27%), Positives = 274/574 (47%), Gaps = 10/574 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           IQ +       + +     R       + + ++        +   P +A + G      +
Sbjct: 142 IQDITERKQADEALREAERRYRSIFENAIEGIYQSTPSNGYLAVNPALARMYGYDTPQDL 201

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +R+    ++++     R      +        +E R+  ++    W+    R +  S
Sbjct: 202 ISMLRDIEHQLYVD--PQRRIEFMRQMAENGIVTNFESRIYKSNGDIIWISENARAVHTS 259

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G++L + G    ITE+K     I   A  D LTG+PNR    DR+   +  SA   NL 
Sbjct: 260 TGELLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLT 319

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +  +D+D++K IND LG  VGD++L    +R+   L+  D +AR  G+ F ++L S+ 
Sbjct: 320 -AIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQP 378

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   I      +   +A P      E  +T S+G          +  +LKNA+ AMY AK
Sbjct: 379 SEESITHTMQRVLHEVAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAK 438

Query: 686 HRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N+ + F        +DR+ +   L  A+ N E  L Y P I L + +I+G EALI+
Sbjct: 439 ELGRNNFQYFATEMNDTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIR 498

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+  + G +S   F+ +AEE  +I  I +++LE   R   +W+  A   PI I +N++S+
Sbjct: 499 WNSAE-GMVSPGSFIPLAEETGLIIPIGVWVLETACRQNRAWQ-LAGYAPITISVNLSSR 556

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   ++ E ++ ++++T      ++L  +ESV+  + E+S  LL RLR +G+ ++LDDF
Sbjct: 557 QLARGDIVEQVEQVLAETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDF 616

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P DT+K + S +     ++   AI+++II +  N+  T++A+ I  E
Sbjct: 617 GTGYSSLSYLKRFPVDTLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETE 676

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + L +  C+  Q   ++ P+       LL+ 
Sbjct: 677 EQFQFLLKSACNEGQGYLMSRPVSHQHFELLLQR 710



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 429 TTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             +     + G      +     ++    H +DR+  RT +   V   R R   E+R+  
Sbjct: 55  FVSEGCLALTGYTEEDILFNSRVSYDDITHPDDREYVRTAVMQAVTGNR-RFDVEYRIVR 113

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           AD +  W+  R     + N       G   DITE+K++ E
Sbjct: 114 ADGEVRWVWERGTNAMHDNKKWGVLEGFIQDITERKQADE 153


>gi|323703086|ref|ZP_08114741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531980|gb|EGB21864.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 619

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 135/573 (23%), Positives = 255/573 (44%), Gaps = 13/573 (2%)

Query: 393 TGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                +  + +  R     +  + DI+   D+  + +      + + G +          
Sbjct: 50  GVEEERKQYQEELRFKSKLLDEANDIILAHDLKGNIIYCNKAASRLHGYSYEEFKSLNLR 109

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L              +   +   +G L +E      D     + +  R +      I  
Sbjct: 110 DLDT--PEFASLIEARMQELLA--KGELAFESAHFRKDKTILPVEVHARVIELQGKKI-- 163

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + I  DITE+K + E I   A+ D LT +PNR    ++L   L  +      R  V+ +
Sbjct: 164 VLAINRDITERKNAEEKIYYMAYYDPLTNLPNRWLIKNQLAQELARARLYQQ-RLAVLFL 222

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+ ++K  ND LG +VGD +L  +  R+   L+    + R+  + F I+L + +      
Sbjct: 223 DLHRFKLTNDTLGHSVGDRLLQGVADRLRSCLRKGCFIGRMGDDEFIIVLPNISYIEDAT 282

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + +++ +P N+   ++ V A IG A +         +LKNA  AMY+AK  GG+ 
Sbjct: 283 GMAGEIIQTLQLPFNIDGHKLHVNARIGIAVYPDHGDNPESLLKNANNAMYYAKDHGGSG 342

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            +        +    +  +  L  A++  E  L Y P + L   +I+G+EALI+W HP  
Sbjct: 343 YQVCTSHMNDNFSRSLILENSLRQALKRQEFILYYQPQVDLKTGQIIGMEALIRWQHPDL 402

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G ++  EF+ +AE   +I  I  ++L+       +W+     PP  + +N++++     +
Sbjct: 403 GMVAPDEFISLAESTGLIGPIGEWVLKTACVQNKAWQAAGL-PPFLMAVNMSARQFRQRD 461

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++ +T  +P+ + L  +ESV M N +     L +L+++GI + +DDFG   S 
Sbjct: 462 LVHTVDEVLKETGLNPAWLTLEITESVAMQNTQNIISALKQLKEMGIQIAMDDFGKGYSS 521

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           LS+L  +P D +K + S            I+++ I M K++   ++A+ +     ++ L 
Sbjct: 522 LSHLRQLPIDKIKIDRSFTWDINTVNGANIMKAAIAMGKSLNLRVLAEGVENGEQLEFLK 581

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             GCD  Q    + PL    ++KLL +++ + K
Sbjct: 582 THGCDEAQGYLFSRPLPAIEVIKLL-DKYQVTK 613


>gi|330961078|gb|EGH61338.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 829

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 149/563 (26%), Positives = 262/563 (46%), Gaps = 12/563 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            Q +       +     + + V   D  +           I G       G   R     
Sbjct: 256 HQQMQEKLHLAATVFESTAEGVLITDTDQRITAVNRAFTEITGYGESDAIGLTPRLLASG 315

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D   + ++         G  Q E   R  D + +   + I  + + +G +  ++ +
Sbjct: 316 QH--DSAFYASMWHQLTAE--GHWQGEISNRRKDGELYPSWLTISAVRSKDGLLTHFVAV 371

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+  K++   +   A  D LTG+PNR  F +RL + L        L   V+ +D+D+
Sbjct: 372 FADISSLKQAQARLDYQAHHDPLTGLPNRTLFENRLQSALLHCEESGGL-GAVLFLDLDR 430

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG  VGD +L  +  R+ E L+  D +AR+ G+ F ++L            A 
Sbjct: 431 FKHINDSLGHPVGDLLLKGIAHRLKESLRDIDTVARVGGDEFIVLLPGLLQPSDALTIAN 490

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +      P    E E+ ++ SIG   +       + ++KNA+ AMY +K +G N VES+
Sbjct: 491 KLLACFNAPFEAGEHELFISPSIGSCLFPDDGTDVATLVKNADAAMYRSKAKGRNRVESY 550

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   S+R+ ++++L  A++ ++  L Y P I L+ + +VG EALI+W HP +G++ 
Sbjct: 551 TRDLTVQASERIALEQELRRALDRNQFSLAYQPKICLLTQALVGAEALIRWSHPTFGDVP 610

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E 
Sbjct: 611 PENFIPLAEENGMILQIGDWVLEQACRQMGKWRK-TRQPFGPLSVNLAGAQLRQPNLVEH 669

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L +DDFGT  S LSYL
Sbjct: 670 IETLLADNGLIPGCLQLEITENFIMSQTQEALAVLHKLKTLGVQLAIDDFGTGYSSLSYL 729

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S + G        AI+R+II + ++++ T+IA+ +      + L   G
Sbjct: 730 KRLPLDILKIDQSFVRGLPDDTHDAAIVRAIIALGRSLQLTVIAEGVETREQQQFLASEG 789

Query: 932 CDYIQDSHVASPLGFNSI-LKLL 953
           C+ +Q    + PL       + L
Sbjct: 790 CEQMQGYLTSLPLPAEEFSARFL 812



 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 18/158 (11%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   + D +          +        I G + 
Sbjct: 122 LVIVRDITQLKQAQQQLQLSEEKFANAFHATPDGLSITRQNDGMLLEVNEGFCRITGYSE 181

Query: 443 G-SMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +     +   W      NDR      L S    R     +  R+R A        + 
Sbjct: 182 QYCLEHSTFDLGVWADL---NDRHTMIERLKSHGQVR----DFRTRLRDASGNIRICEVS 234

Query: 499 IRP--MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +P  ++  +      + I  DIT+ ++  E +   A 
Sbjct: 235 SQPLVIAGED----CVLTITRDITQHQQMQEKLHLAAT 268


>gi|239909085|ref|YP_002955827.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798952|dbj|BAH77941.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 821

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 143/567 (25%), Positives = 264/567 (46%), Gaps = 8/567 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  +       + + +           S   +   D+ R+ V        + G  +  
Sbjct: 242 GTVVDITDRKRAEEQLAAQRAYFDQLFANSPQAIALIDMRRNIVDVNHAFEDLFGFKAAE 301

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G       YI               +   +  ++  FR +  D +   + +   P+  
Sbjct: 302 IKG--YGMRAYIVPKHLLGECESTRGAILSGKPMVRETFR-QHRDGRLIPVSMIGFPIEF 358

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G     + I  DI+E+K   E I   AF D LTG+PNR  F DRL   L  +    + 
Sbjct: 359 G-GQPQGIVYIYQDISERKAFEEQITHQAFHDALTGLPNRSLFADRLDRALTRARRRGDY 417

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V++ID++K+K IND LG   GD +LV ++RR+   ++  D +ARL G+ F +IL   
Sbjct: 418 QYAVLMIDLNKFKGINDTLGHQAGDQLLVEVSRRLMACVRSMDTVARLGGDEFAVILEEL 477

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  ++      +  ++  P  L    +T  AS+G    T    +  ++L++A++AMY A
Sbjct: 478 KSKKEVMAVVDRIGAALGKPCMLCGTTVTPGASVGIVLRTRDYQSPEDILRDADIAMYRA 537

Query: 685 KHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           K  G   +   R       D + ++ DL  A++  EL L Y PI+ +    I G EAL++
Sbjct: 538 KESGRPSMIFDRRMHQEILDAINLEADLRAALDRGELLLHYQPIVDVQTGRIEGFEALVR 597

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802
           WDHP  G +   +F+ +AEE  +I+ +  F++    R + +W+ +      + + +N++ 
Sbjct: 598 WDHPDRGLVPPVQFIPLAEETGLIQPLGRFVIAEACRQLRAWQLELPEAEQLSVSVNVSC 657

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              +   L + +  ++  T   P+ +KL  +ESV+M + + +   L RL+ +G+ + +DD
Sbjct: 658 HQFVKEGLVDHVAGVLETTGLDPACLKLEITESVLMHDAQHTAGELSRLKALGVKIAIDD 717

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P D +K + S +       +   I++SII +A+++  T+IA+ +  
Sbjct: 718 FGTGYSSLSYLRQLPIDHLKIDRSFISGDDVNGESQEIVKSIIALARSLGLTVIAEGVEH 777

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFN 947
           +  + +L    CD  Q    + P+  +
Sbjct: 778 QDQLDKLRNADCDKAQGFMFSRPVDKD 804



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 8/161 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440
           +   + + +       + + +   +       + + ++        +     +A I G  
Sbjct: 111 VSCVIFRDISGRRRAEEQLDAAERKYRAIFENAVEGIFQTTPGGRYLEVNRTLARIYGFD 170

Query: 441 ASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           +   M    R+    ++     RD+F   L +    R     +E  +   D    W+   
Sbjct: 171 SVDEMTEHFRDIKNQLYVEPKRRDDFVRELSAHDQVR----NFESAIHKKDGSVIWISEN 226

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538
            R + +++G +  Y G   DIT++K++ E +    A+ D L
Sbjct: 227 ARVVRDADGAVAYYEGTVVDITDRKRAEEQLAAQRAYFDQL 267



 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 8/123 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-NDRDNFR 465
                  S +     D     +        + GL +  + G  R+    +   +D +   
Sbjct: 13  YRRIFESSPNAALVRDASGVVLAVNASFEALFGLDAAEVVG--RDLRQVVRPADDGETAG 70

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                             R  A D           P    +G  +  + I  DI+ ++++
Sbjct: 71  GDW----SLGGAAFSRRTRWTAGDGVTVDACPCQFPAGQVDGKPVSCV-IFRDISGRRRA 125

Query: 526 LEG 528
            E 
Sbjct: 126 EEQ 128


>gi|192360831|ref|YP_001982921.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190686996|gb|ACE84674.1| EAL domain protein [Cellvibrio japonicus Ueda107]
          Length = 798

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 157/689 (22%), Positives = 292/689 (42%), Gaps = 14/689 (2%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH-GMKGYE 335
           ++  +            +    +    P +   + R      +   +Y       +   E
Sbjct: 101 QYLLRASRAFADLSLSESKTRALLSNLPDIIIRLHREGAVLDMQVGSYVFDMGEWLHSAE 160

Query: 336 RAVLLIPAWILIFIWF-IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
                +P+ I   I   I   +        +         +      I     Q VL   
Sbjct: 161 DGSYHLPSDIAALIGTRIDAALRGKGMQMLEFQWSRDPMCVRHWEARIVPRDRQEVLLVV 220

Query: 395 YFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                      +  L       S + +   D     ++      TI+G     + G   +
Sbjct: 221 REITQRRQQENQLRLWAKVFEASNEAILITDANFRIISVNRAYETIMGYREQDVLGV--D 278

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L         +F   L S +  R G  Q E   +    +       +  ++NS G+   
Sbjct: 279 TLEVGAKLQTYSFYRNLVSLLKER-GHWQGELINQRKSGEEFPSWFSVTQVTNSRGEPEH 337

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           YI I NDITE K S   I   A  D LTG+PNR    DRL   +         +  ++ I
Sbjct: 338 YIAIFNDITEHKNSRAQIEFLAHHDALTGLPNRILLNDRLEMAITQVRR-QGEKLGILFI 396

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG  VGD +L    +R+   ++  D ++RL G+ F ++         +A
Sbjct: 397 DLDRFKNVNDSLGHGVGDQILQEAAKRLTANVRTGDTVSRLGGDEFVVLFPRVRTEGNLA 456

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D  I +R+ + +P  +    + +T SIG A +       + ++KNA+ AMY AK +G N+
Sbjct: 457 DLTIKLREQLQLPYTVDGISLHITPSIGIAVYPDDGEDPNTLIKNADAAMYLAKEKGRNN 516

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + +  +      DR+ ++ DL  A++  +  L Y P I     ++ GLEALI+W H + 
Sbjct: 517 YQFYTPTLNAKTLDRLKLESDLRSAIDAGDFELHYQPQIIGSSGQLWGLEALIRWRHRER 576

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS +EF+ +AEE  +I  +  ++L +  + +  WR Q +   + + +NI++      +
Sbjct: 577 GLISPAEFIPLAEETGLIVGLGDWVLVQAVKQLAEWRRQGHNH-LVVSVNISALQFRQGD 635

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + ++ ++ +    P  I+L  +E+++M + + +   L  LR++G  + +DDFGT  S 
Sbjct: 636 FLDRVKHILQEAQLVPDAIELELTETMLMQDVQSAIQTLKGLRELGFRIAIDDFGTGFSS 695

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL ++P + +K + S +       + +AI+ SII +A+ +    IA+ +    +   L
Sbjct: 696 LNYLRHLPINVLKIDQSFVREMLQEPESLAIVESIIALAQALGKETIAEGVETRAEFDVL 755

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              GC  +Q    A P+      +  +++
Sbjct: 756 QARGCRLMQGYFFARPMPPVIFDQWYQQQ 784


>gi|118579339|ref|YP_900589.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118502049|gb|ABK98531.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter propionicus DSM 2379]
          Length = 718

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 154/597 (25%), Positives = 289/597 (48%), Gaps = 21/597 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I    + ++  +    + + +   R S A   +    W+W+ + D V  +     I+G+ 
Sbjct: 116 ILAYRVNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLDVVQLSEPCRQIMGID 175

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIR 500
           S +    I + +   H   R   R  LD+ +  R   L  + +   AD +   ++ +   
Sbjct: 176 SATQVRDIASLIALAHPLGRPYLRKGLDALME-RGRPLSLDCQTATADEEDKRFIHLEAE 234

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              +++G I    G   DIT +K + E I   A+ D+LTG+PNR  F + L   L  S  
Sbjct: 235 EHRDASGRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQ 294

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL----------- 609
               +  +M++D+D++K IND LG   GD +L  +  R+   ++  D +           
Sbjct: 295 HKR-QLAIMLLDLDRFKGINDSLGHDAGDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSL 353

Query: 610 -ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ARL G+ F I+L         A  A  + +++  P  L   E+ ++ SIG + +     
Sbjct: 354 IARLGGDEFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFISCSIGISIYPHDGT 413

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHP 726
               ++KNA++AMY AK  G +  + +           +  +  L  A E  E +L Y P
Sbjct: 414 DLEILVKNADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQP 473

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I  +   I+GLEAL +W++P+ G +S   F+ +AEE  +I A++ ++L  + + + +W+
Sbjct: 474 QIDCVTNRIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQ 533

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
               +P + + +N++++  L   L + +Q + S+   +   + L  +E ++M N E    
Sbjct: 534 AA-GIPLVRVAVNLSARHFLKANLNKTIQQIRSRGAAARDHLDLEITEGMLMENAEEVVS 592

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904
           +LG L++ G+++++DDFGT  S LSYL  +PF T+K + S ++ S +     +++ +II 
Sbjct: 593 VLGMLQETGVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDNVESASVVTAIIA 652

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960
           +A ++   ++A+ +     ++ L   GC  IQ    + PL  + I +LL+E R P  
Sbjct: 653 LAHSLGKEVVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGA 709


>gi|212640028|ref|YP_002316548.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus
           flavithermus WK1]
 gi|212561508|gb|ACJ34563.1| Multidomain signal transduction protein (contains PAS, GGDEF and
           EAL domains) [Anoxybacillus flavithermus WK1]
          Length = 647

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 148/571 (25%), Positives = 279/571 (48%), Gaps = 11/571 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +    +        + DIV+  ++  +  +  P    + G  +  +       L 
Sbjct: 84  ELRQKMKISEQYYRSLFEHNPDIVYSTNLEGNFTSVNPAFERVFGYKAEEILHTNA--LD 141

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           YI   D    R      +  +  R   E  + +   + +   I+  P+   +G  +   G
Sbjct: 142 YIKREDIPRVRRYFYRALKGKVQRYNLE--IPSKSGEVYLFQIKNVPII-VDGKKVGIYG 198

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DITEQK++ E I   A+ D  TG+PNR  F + +   ++ +         V+ ID+D
Sbjct: 199 IGRDITEQKRAEEHIKYIAYHDVDTGLPNRLKFTNIVKQAINEAKETGGT-LAVLFIDMD 257

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND +G   GDD+L  +  RI ++L       R  G++F ++L    ++  + ++ 
Sbjct: 258 RFKIVNDTIGHYGGDDILKQMAERIKKILPDGAHFGRFGGDKFSLLLTKRTDAQTVIEWT 317

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + IA+PI   E+E  +TAS+G + + +  + +  +LKNA+ A+  AK +GGN V  
Sbjct: 318 KKLLQHIALPIVYEEKEFFLTASVGVSFYPADGVDAQSLLKNADTAVNRAKQKGGNSVML 377

Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +  +++     RV ++  L  A+E +E +LVY P++ L+  +IVG EAL++W+HPK G +
Sbjct: 378 YATKMNEQVIYRVELERYLRKALEKNECFLVYQPLLDLVTGKIVGSEALLRWNHPKIGLV 437

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE+  I  +  ++L         W D      + + +N+++         E
Sbjct: 438 SPLEFIPLAEEIGFIHDLGRWVLTEACMQTKKWHD-LGFHSLMVSVNVSASQFQHPTFFE 496

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q  + ++      + L  +ES +M N   S  ++ +L+++G+ +++DDFGT  S LSY
Sbjct: 497 DVQRALKQSQLPAHCLHLELTESSMMRNMYYSIQVMKQLQQLGVHVSIDDFGTGYSSLSY 556

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P +T+K + S +    + R   AI++SII M   +   ++A+ +     +K L R+
Sbjct: 557 LKDLPINTLKIDRSFIYQLHKDRSDIAIVKSIITMGHGLRLKVVAEGVETAEQMKLLKRL 616

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            C Y Q   +  PL      K + +   +++
Sbjct: 617 KCHYAQGYAIFKPLSAEQFEKQVLQGNAVIQ 647


>gi|254457492|ref|ZP_05070920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207086284|gb|EDZ63568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 794

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 136/583 (23%), Positives = 287/583 (49%), Gaps = 10/583 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++   + +++  T   +  I         A   +    W+++++   +  + ++  ILG+
Sbjct: 215 IMVQKLTKYIDNTQKLNDTILQKEAHLKEAQRIAKVGSWEYNVIDGSLLLSDEVYRILGV 274

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             G+     +++L +I  +D DN   +++  + +   +   ++ +        ++  R +
Sbjct: 275 KFGTAI-TWKDFLDFISKDDYDNVVKVIEDAIKH-GSKFNIKYALILKSKNEIYVQTRGK 332

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +    G ++R   ++ DIT   K+ + I   A+ D+LTG+ NR    DR+   +  +  
Sbjct: 333 -VRKKAGGMVRITAVSMDITNDIKNKKTIEKLAYYDSLTGLANRTLLKDRMHKAIQYAKR 391

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     VM +D+D +K IND LG +VGDD+L+ +   +   ++  D L+RL G+ F I+
Sbjct: 392 -EQTNLAVMFLDLDHFKLINDTLGHSVGDDMLIHIAEILKIHIRESDTLSRLGGDEFVIL 450

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L S  +     + A  ++ ++    ++ + ++ +T+SIG + +      S E+++NA+ A
Sbjct: 451 LPSVKSIFDAQNIASKIQHTLQSKHDIGDHQLYITSSIGVSLYPDHGDNSEELIRNADTA 510

Query: 681 MYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVG 737
           MY AK+ G N+   +  S   +   ++ +++DL  AV++   + + Y   I   +  I G
Sbjct: 511 MYEAKNSGRNNYRIYSQSMGNYVDQQLHLEQDLIQAVKHKAGIEVFYQAKIDSENNFISG 570

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL +W HP  G I   +F+ IAE   ++  +   ++E     +  W     +  + I 
Sbjct: 571 AEALARWRHPTNGLIFPDQFIHIAESTGLMIELGNIIIEESIFQLQEWNK-LGLVGLKIA 629

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++++   D  L   + +++     SPS+++   +E++ M N   +  +L  L+ IG+S
Sbjct: 630 INLSARQFQDPNLVSFISSMLHNYQVSPSQVEFEITETLSMTNMTNTLRILTELKAIGVS 689

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S L+YL   P +T+K + S +      +    I+++I+ MA ++    +A
Sbjct: 690 IAIDDFGTGHSSLAYLKKFPINTLKIDRSFVLDIIEDDDDKTIVQTIVSMAHSLGFNTVA 749

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           + +     +  L  MGCD +Q  + + P+  +   K +++  P
Sbjct: 750 EGVETLEHVALLKTMGCDQLQGYYFSKPIPKDEFTKFIQDYMP 792


>gi|332528558|ref|ZP_08404546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hylemonella gracilis ATCC 19624]
 gi|332042069|gb|EGI78407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hylemonella gracilis ATCC 19624]
          Length = 607

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 142/590 (24%), Positives = 270/590 (45%), Gaps = 36/590 (6%)

Query: 388 QHVLATGYFSQGIFSDGE--RQSLAVLGSGDIVWDWDIV-------RDRVTTTPD---IA 435
           +H +   Y +Q      E  R       S +  W+ D            +  +     + 
Sbjct: 24  RHAVEARYQAQMAQLRAEQVRLRELAEMSSEWFWEMDEELRFSKVYGGGLLVSSSSTDVE 83

Query: 436 TILGLASGSMHGP---IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQ 491
           + LG     +         W  +                +  R+    + +++ +    Q
Sbjct: 84  SPLGKRRWELPITNVAPEKWTEH-------------RQMLETRQPFKDFVYQIHSPLTGQ 130

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            HW  I  +P+   NG    Y G+  DITE+K+    +   A+ D LTG+PNR    DR+
Sbjct: 131 LHWCSISGKPIF-ENGKFKGYHGMGVDITERKRVEMRVEFLAYHDALTGLPNRALLQDRM 189

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              +  +    +    +  ID+D +K+IND LG A GD +L  +  R+   ++  D ++R
Sbjct: 190 QQAIAQAERAQDG-LALAFIDLDNFKRINDSLGHAAGDALLREIATRLKGCVRESDTVSR 248

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            SG+ F ++L   +   +       + +++  P++   +EI+ +ASIG A +     T  
Sbjct: 249 QSGDEFIVVLSGVDGVQRCIPTLDKIMRTLQEPMHFEGKEISASASIGVAFYPQDGTTFD 308

Query: 672 EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           E+ K A+LAMY +K  G N    +   +++   + ++++  L LA+E  EL L Y P + 
Sbjct: 309 ELRKKADLAMYRSKDTGRNAYYFYDEAMNNDAEEHLLLRNGLRLAIERGELVLHYQPQMD 368

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           +    +VG+EAL++W  P +G +    F+ +AE+  +I  I  ++LE+  R   +W+D  
Sbjct: 369 IRSGRMVGVEALLRWQSPTFGLVEPGRFIPVAEDSGLIVPIGAWVLEQACRQARAWQDDG 428

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P + + +N+++     +++   +   + ++   P  ++L  +ES+++ + E+   L+ 
Sbjct: 429 L-PALTVAVNLSAVQFRRDDVEATVDQALERSGLPPHCLELELTESILLQDVEQVLALVQ 487

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAK 907
           RLR+ G+  ++DDFGT  S L+YL  +  D +K + S +    +     AI+ +I+ MA 
Sbjct: 488 RLRQRGMHFSIDDFGTGYSSLAYLKRLDIDKLKIDRSFVHDLDQTADAAAIVEAIVEMAH 547

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +    IA+ +     +  L  +GCD  Q    A P+      + L   F
Sbjct: 548 KLGLRTIAEGVESPELLDRLRDIGCDEAQGYLHARPMPAQDFSRYLHAHF 597


>gi|330505534|ref|YP_004382403.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919820|gb|AEB60651.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 765

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 155/554 (27%), Positives = 271/554 (48%), Gaps = 9/554 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + I     + +     + + V   D  +  V   P  + I G +S  + G     L   
Sbjct: 196 QRAIDDSLRQAAAVFDATQEGVLVTDAKQCIVHVNPAFSRITGYSSEEILGQHPTLLKSG 255

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +    F   L   +  R G    E   R    + +     IR + +  G +  Y+ + 
Sbjct: 256 RHD--AAFYHSLWHALENR-GAWSGEVWNRRKSGEIYPQWQCIRVIHDEQGRVSHYVAVF 312

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT  K+S   +   A  D L+ +PNR  F +R+   L+ S  ++ LR  V++ID+D +
Sbjct: 313 SDITALKRSQRELDYLAHHDPLSNLPNRLLFTERVAHALERSTLEE-LRGAVLLIDLDHF 371

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IN+ LG  VGD +L  +  R+ + L     LARL G+ FG++  +   + + A+ A  
Sbjct: 372 KHINESLGHNVGDLLLKGVGERLQQDLPSGSTLARLGGDEFGLLSENCAEAAQAAELAQR 431

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + +S+  P  L   E+ + ASIG + +     +  ++L+NA+ A++ AK  G      + 
Sbjct: 432 LLRSLEPPFRLDGHELYIGASIGISLFPEDADSVEQILRNADSALFKAKSSGREGYAFYV 491

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +   RV +   L  A++N EL + Y P+  L D   VG+EAL++W HP+ G I  
Sbjct: 492 QELTDYARQRVELASSLRHALDNQELRVYYQPLHDLRDGRQVGMEALVRWQHPQRGLIPP 551

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ IAE+  MI  I+ ++LE+  R ++ W  + +    F+ +N++S+     EL   +
Sbjct: 552 GEFIPIAEDNGMIGVIDAWVLEQACRQMVRWNAEEHALS-FVAVNVSSRLFSRGELDLKV 610

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++++T   P +++L  +ES +M +P+ +  LL  LR +GI L +DDFGT  S L+ L 
Sbjct: 611 ASVLAETGLPPEQLELEVTESAIMEDPDAALKLLTSLRALGIRLAIDDFGTGYSSLARLK 670

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S + G     +  AI R++I + K++   ++A+ I        L  +GC
Sbjct: 671 RLPVDKLKLDQSFVRGLPDDPEDAAIARAVIALGKSLGLKVLAEGIEQPAQADFLRELGC 730

Query: 933 DYIQDSHVASPLGF 946
           +Y Q  H   P   
Sbjct: 731 NYGQGYHFGHPQPV 744



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 2/182 (1%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           +   + ++      +     +  + L   L+   + +H          +  + ER  LA+
Sbjct: 28  LLAALGLSVAQQERLQSFKGLFFVTLTSSLLYLVLHRHARQYRSARLQLAGNEERLRLAL 87

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             + D +WDWD+   RV  +   A +LGL   ++      W   +H +D++     L++ 
Sbjct: 88  DATRDGLWDWDVSSRRVFFSEGYAKLLGLTPQTLGDTREAWAERLHPDDQERALHALNA- 146

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             +     +  +R+R AD  + W+  R R + + NG   R+IGIA+DIT Q+   + +  
Sbjct: 147 -EFGEQHYENIYRLRHADGSYRWIHSRGRLLRDENGQPQRFIGIASDITRQRAIDDSLRQ 205

Query: 532 NA 533
            A
Sbjct: 206 AA 207


>gi|66047492|ref|YP_237333.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258199|gb|AAY39295.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 1278

 Score =  552 bits (1423), Expect = e-154,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 262/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 710  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                    R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 769  ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 826

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 885

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 886  KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIH 945

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 946  VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 1005

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 1006 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 1065

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1124

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +   SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1125 GKRIAHILEQAGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+       
Sbjct: 1245 EHDCDEVQGYLFGRPMPPAQFEA 1267



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 620

Query: 444 S-----MHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV-----RAADNQF 492
                     I N    +  +        +LD      R R +   R+       AD + 
Sbjct: 621 WIIQNGWSAAIANPQQIVGFDALMSRIDKVLDKPQELARLREEVTTRMFLFDCLRADGRK 680

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 681 IPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 428 ILSIGDITSRKQVELSLLDRESFWSDVVQTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 487

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H +D  +++ + L          LQ   R R  ++ +    IR +
Sbjct: 488 SELHAMGEFFWEVLLHPDDARHYQDMRLRQRHHGHNELLQSVLRFRDRESNWRSFDIREQ 547

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 548 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 588


>gi|253999917|ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           SIP3-4]
 gi|253986596|gb|ACT51453.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 821

 Score =  552 bits (1423), Expect = e-154,   Method: Composition-based stats.
 Identities = 154/555 (27%), Positives = 273/555 (49%), Gaps = 15/555 (2%)

Query: 410 AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FR 465
           A+  S   +   D+       +        + G +S    G    +L     +DR+    
Sbjct: 265 AIEASATPILIVDVTQPAMPLIYVNRAFELVTGYSSQEAVGRNCRFLQG---HDREQPEL 321

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKK 524
             + + +  R        R    D    W  + + P+ + +G +   ++G+  DITE ++
Sbjct: 322 EKIRTAIRERCPGYAI-LRNYRKDGSLFWNELYVAPVPDPHGGEPRYFVGVQKDITEIRQ 380

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   A  D LTG+ NR    +R+   +  +    N   +V  IDID +K++ND +G
Sbjct: 381 YQEALERQANYDTLTGLANRNLLKERMQQAISEARRH-NWTFSVAFIDIDNFKRVNDSMG 439

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + GD+++  L +R+   L+  D +ARL G+ F ++L S++    I      +R +I  P
Sbjct: 440 HSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTVVQRIRNTIINP 499

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
             +  R++TVT SIG A++      +  +L NA+ AMY AK  G N+   +         
Sbjct: 500 FIITGRQLTVTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSNNFRFYAKEMNAELG 559

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ ++ DL  A+EN +L L Y P + + + +I+G+EALI+W HPK G I   +F+ ++E
Sbjct: 560 HRLSLENDLWHALENQQLVLHYQPQVCMRNSQIIGMEALIRWQHPKLGMIPPLQFIPLSE 619

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I ++++E  A      +  A  PPI + +N++ + L   +L   ++  +  + 
Sbjct: 620 DDGLIVPIGIWVMETAAHQNRQLQ-LAGYPPIRVAVNLSVRQLEQKDLVHCIEKTLQHSG 678

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  ++L  +ES++M N E S + L R+  +G+ L+LDDFGT  S LSYL  +P + +K
Sbjct: 679 LDPQCLELEITESMLMHNIEESIITLNRISDLGVQLSLDDFGTGYSSLSYLKRLPINRLK 738

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +   T       I RSII +A ++E  +IA+ +        L   GCD +Q   +
Sbjct: 739 IDKSFINDITTTYNDAIIARSIIALAHSLEIQVIAEGVESADQYAFLLENGCDEVQGYLL 798

Query: 941 ASPLGFNSILKLLKE 955
           + P  F  +  LL++
Sbjct: 799 SRPRPFEEMEALLRD 813



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 6/193 (3%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--VIQHVLATG 394
           A  L P    IF+            L N      +   L  +   +       +  +   
Sbjct: 69  ARELAPEIPFIFVSGTIGEETAIHSLKNGAADYIIKNNLSRLPSAVTSALERAEEKIMHK 128

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + + +      + +     I +  D     +         L L    + G     L 
Sbjct: 129 RMERELENSNRLFRVFMQNLPAIAFIKDQQGQYIFANASTVDALQLPHEQIIGKHDTLL- 187

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                     R      +      +Q+  +   AD+   W++    P+ + +G+     G
Sbjct: 188 -FPPQLAQEMRAAEQQTLAQGEA-IQHVRQFPLADDVKLWLLTTF-PVQDMDGNFNHIGG 244

Query: 515 IANDITEQKKSLE 527
           I  DITEQ+K+ E
Sbjct: 245 IGIDITEQRKAEE 257


>gi|168186555|ref|ZP_02621190.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum C str. Eklund]
 gi|169295410|gb|EDS77543.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum C str. Eklund]
          Length = 961

 Score =  552 bits (1423), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/569 (25%), Positives = 276/569 (48%), Gaps = 7/569 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIR 450
           A     + +    ++  L + GS D +W+WDI  ++   +   + I G ++   ++   +
Sbjct: 390 ALEKSKEKLEKGKQKYKLVIEGSNDAIWEWDIKENKFFMSNKWSKITGHSTYTDINENKK 449

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +   I   D  N     +  +   +  +  E R+    N   W+ I+ + + ++  +++
Sbjct: 450 YFSKVIEEEDYKNIIDEFEKVLYEGQNCIDVECRILNKFNYQKWINIKGKALRDNKENVI 509

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           +  G   DITE K++++ I   A+ D+LTG+PNR ++L  +  I+     +  +   ++ 
Sbjct: 510 KIAGSITDITEGKEAIKRIEYLAYNDSLTGLPNRAAYLRYIYNIIQKVKENKKI-GAIIF 568

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DID +K +ND LG   G+++L  +  RI  +L   +   RL G+ F I+     +   I
Sbjct: 569 LDIDNFKNVNDTLGHDYGNELLKRVNERISYVLTENEKFYRLGGDEFIIVQCGSYDERDI 628

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  + K       +    +  T S+G + + +     + + KNA++AMY AK+ G N
Sbjct: 629 ELLADKILKVFNKSFIVKNERVYTTVSLGISFFPNDSCDHNVLFKNADIAMYSAKNLGKN 688

Query: 691 HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +             ++E L  A+E  EL L + P +     EI G+E L++W   K
Sbjct: 689 KYLVYNKDMSHDLIRRSQVEEGLRHAIERGELKLAFQPQVNANTGEIKGVEVLLRWKSKK 748

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           +G +S +EF++IAE+  +I +I  ++L         W +  N+  I I +N++   L  +
Sbjct: 749 FGFVSPAEFIIIAEKSGLINSIGEWVLRESCLKKKQW-ELENLKDITISVNVSVIQLQQD 807

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E ++ ++ KT   P+ ++L  +ESV+M + E +  +L  +  IG+ + LDDFGT  S
Sbjct: 808 DFIEKLKRILEKTKLPPACLELEITESVMMESKETNLDILNSISDIGVKIALDDFGTGYS 867

Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P + +K + S +      +    I+  II +A+ I   +IA+ +     +  
Sbjct: 868 SLSYLRMLPINKIKLDKSFIDTIHINKNEKFIVEGIIDLAQKIGFNVIAEGVELSEQLDV 927

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L +  CD IQ  + + P+  +   +LLK+
Sbjct: 928 LCKANCDEIQGYYFSKPVEEDKFKELLKD 956


>gi|24371939|ref|NP_715981.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24345777|gb|AAN53426.1|AE015481_9 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1515

 Score =  552 bits (1423), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/555 (25%), Positives = 275/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P  + I G + G +          IH       RD F 
Sbjct: 962  VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKF-----LIHLAYSRQQRDLFN 1016

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +I    + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+
Sbjct: 1017 SIEQQLLRHK--HWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1074

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1075 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1133

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             +GD +L ++  R+   ++  D +ARL G+ F IIL     +      +  + K+   P 
Sbjct: 1134 HIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1193

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ + ++ SIG + + +       ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1194 LLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1253

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             + ++  L  A+ ++EL LVY P   L +  + GLEAL++W H + G IS +EF+ +AEE
Sbjct: 1254 HMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEE 1313

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              MI  I  +++ +  + +  W +      I + +N++++ L   ++   ++  ++ +  
Sbjct: 1314 TGMINQIGHWVINQSCQQLAEWNE-LGFSDISMAVNLSARQLK-ADIISTIEVALAVSGL 1371

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1372 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1431

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1432 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1491

Query: 942  SPLGFNSILKLLKER 956
             PL       LL++R
Sbjct: 1492 KPLSAQDCQTLLQQR 1506



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 41/257 (15%)

Query: 350  WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGERQS 408
            + + + + +           A      L+ +        Q       F   I +  ER  
Sbjct: 781  YALLVNLTVKAPFYRTPFAYAFYVLFTLVSMGWALRWRKQKRSQQQEFETSIRASEERLK 840

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            LA+  SGD +WDW+I   +V  T     +       +           H  DR+ F+  L
Sbjct: 841  LALWASGDGMWDWNIQEQQVYRTNTDIAVPQWNGHQLLHDNA------HPEDRERFKYEL 894

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLE 527
               +  R    + E+R+  +  ++ W++ R + + +N+    +R  G   +IT +K    
Sbjct: 895  TEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTTRNITSRKLIE- 953

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVL--- 583
                                      ++  S   +++   V+V  +D + + +N      
Sbjct: 954  ------------------------NELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAI 989

Query: 584  -GIAVG---DDVLVSLT 596
             G + G   D  L+ L 
Sbjct: 990  TGYSEGQISDKFLIHLA 1006


>gi|146309043|ref|YP_001189508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas mendocina ymp]
 gi|145577244|gb|ABP86776.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pseudomonas
            mendocina ymp]
          Length = 1244

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/559 (26%), Positives = 269/559 (48%), Gaps = 9/559 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             Q +  + ++ +     + + V   D+ +           I G A     G   + L   
Sbjct: 674  RQQMQEELQQAATVFESTAEGVMITDLEQRITAVNRAFTEITGYAEAEALGQRPSLLAS- 732

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +D+  +  +         G  Q E   R  + + +   + I  + N++  I  ++G+ 
Sbjct: 733  GQHDQAFYNAMWHCLATN--GHWQGEIWNRRKNGELYPEWLTISAVRNADNQITHFVGVF 790

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+  K +   +   A  D LTG+PNR  F +RL + LD S  +D     V+ +D+D++
Sbjct: 791  ADISSLKHAQARLDHQAHHDPLTGLPNRLLFENRLRSALDGSRAEDRA-GAVLFLDLDRF 849

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K+IND LG  VGD +L ++  R+   L+  D +ARL G+ F I+L     +      A  
Sbjct: 850  KQINDSLGHPVGDQLLRAIAARLKLQLRDIDTVARLGGDEFIILLPGLQQAEDADQVAQK 909

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +      P ++   E  V+ASIG + +       + ++KNA+ AMY +K +G N  E + 
Sbjct: 910  LLDCFTAPFDIDHHEFFVSASIGISLYPKDGADVATLVKNADAAMYQSKAKGRNRSEFYT 969

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             S     ++R+ ++++L  A+E  EL L Y P   L  + +VG EAL++W HP +G+I  
Sbjct: 970  RSLTFQVNERMAMEQELRRALERDELCLYYQPKFCLRSQRLVGAEALVRWPHPVFGDIPP 1029

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AEE  +I  +  ++L+   R +  W++        + +N+A   L    L   +
Sbjct: 1030 DRFIPVAEESGLILPLGDWVLQEACRQLQCWQENNQGFG-TLSVNLAGAQLHQPSLVSRI 1088

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              L+ +   +   ++L  +E+ +M     +  +L RL+++G+ L +DDFGT  S LSYL 
Sbjct: 1089 GELLQQHGLAAGLLQLEITENFIMNQAGDALDILHRLKELGVQLAIDDFGTGYSSLSYLK 1148

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S + G       +AI R+II + ++++ T+IA+ +  +     L   GC
Sbjct: 1149 RLPLDVLKIDQSFVRGLPDDPHDLAITRAIIALGQSMQLTVIAEGVETKAQELCLAAEGC 1208

Query: 933  DYIQDSHVASPLGFNSILK 951
              IQ   ++ PL   +  +
Sbjct: 1209 LQIQGYVISRPLSAEAFTR 1227



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRN 451
                Q + S  +     V     I W+ +         +P    +LG            
Sbjct: 299 REALEQELRSREQHFRDMVESLSAITWEAESSGLTYTYVSPHAEKLLGYPLEDWL-QPGF 357

Query: 452 WLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           W  ++H +D+      L   +           E+R+ AAD    W+   +  +   +  +
Sbjct: 358 WQRHLHPDDQQR---ALRRCLEQCAAGEDHALEYRLLAADGHVVWVRDIVTLLQRGDQQV 414

Query: 510 LRYIGIANDITEQKKSLE 527
           +R  G+  DI+E K++  
Sbjct: 415 VR--GLMIDISEAKQTEH 430



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442
             V++ +       Q +    E+ + A   S D +    +     +        I G   
Sbjct: 540 VVVVRDISQLKATQQQLQISEEKFARAFHASPDGLLISRMRDGLLIEANDGFTRITGYQL 599

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +       L       DR      +      R        RVR    Q     +  +P
Sbjct: 600 DEVANQSTLSLGIWADPQDRQRLVERIRQHGSVR----DMIARVRTKSGQLRLCELSAQP 655

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    G     + IA DITE+++  E +   A 
Sbjct: 656 L--PVGGEDCLLTIARDITERQQMQEELQQAAT 686


>gi|323699258|ref|ZP_08111170.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. ND132]
 gi|323459190|gb|EGB15055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans ND132]
          Length = 826

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 152/572 (26%), Positives = 269/572 (47%), Gaps = 11/572 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPI 449
                 + +    ER         D  W+  I  D      +P    I G          
Sbjct: 236 QREKLVRVLQESEERYRTIADFGYD--WEIWIGTDNSIHYCSPACQRITGYPPERFFEDP 293

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 I  +D+D +   L      R   L  +FR+  AD +  W+ +  R +S   G  
Sbjct: 294 GLVREIIINDDQDAWDAYLVEADSDRGDSL--DFRILTADGKVRWLGVVGRSVSGIGGKP 351

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L       DIT++K   E +   A  D LT + NR   LDRL   +  +   +N    V+
Sbjct: 352 LGMRLSFRDITDRKTMEEQLRHQALHDPLTNLANRTLCLDRLGQAMRRAKRRENYFFAVV 411

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG   GD VL     R+   ++  D ++R  G+ F ++L   ++  +
Sbjct: 412 FLDLDRFKIINDSLGHRFGDMVLAETAIRLSGEMRGLDTVSRFGGDEFVLLLDELSSPGE 471

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +R+ ++ P      E+  TAS G          + ++L++A +AM+ AK  G 
Sbjct: 472 AIRIIKRVRERLSEPFRFNGNEVQTTASFGIVLSPVVDGKAPDVLQHANIAMHRAKEAGR 531

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + F         D++ ++ D+   + N E ++VY PI+ L   ++VG EAL +WDHP
Sbjct: 532 NRFKVFTERMLETAVDQLTLENDMRRGLANDEFHVVYQPIMDLNGSDVVGFEALARWDHP 591

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLL 806
             G I  +EF+ +AEE  +I  +  ++L++  R +  WR+       IF+ +N++SK   
Sbjct: 592 DRGAIPPAEFIPMAEESGLIVELGEWVLQQALRTLAGWRNDTPGVDDIFMSVNLSSKQFA 651

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             EL + +   + +    PS +KL  +ES +MGNPE S  +L RLRK G+  ++DDFGT 
Sbjct: 652 RIELDKIVVRTLERYGLPPSCLKLEITESSIMGNPESSLRILNRLRKAGVRFSIDDFGTG 711

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LS L  +P DT+K + + ++      + + I++++I +  +++  ++A+ +     +
Sbjct: 712 YSSLSQLQQLPVDTLKVDRTFISRMRTDPENMEIVKAVIALGHSLDLNVVAEGVENPEQL 771

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L  + C+ +Q  +   P+      ++L++R
Sbjct: 772 CSLLNLSCNCVQGFYFHEPMNAALAREMLRQR 803


>gi|330969542|gb|EGH69608.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1254

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 686  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 744

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                    R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 745  ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 802

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 803  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 861

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 862  KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDESREAALNRAIH 921

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 922  VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 981

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 982  QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 1041

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1100

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1101 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1160

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+       
Sbjct: 1221 EHDCDEVQGYLFGRPMPPAQFEA 1243



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 596

Query: 444 S-----MHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV-----RAADNQF 492
                     I N    +  +        +LD      R R +   R+       AD + 
Sbjct: 597 WIIQNGWSAAIANPQQIVGFDALMSRIDKVLDKPQELARLREEVTTRMFLFDCLRADGRK 656

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 657 IPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 698



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 404 ILSIGDITSRKQVELSLLDRESFWSDVVQTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 463

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H +D  +++ + L          LQ   R R  ++ +    IR +
Sbjct: 464 SELHAMGEFFWEVLLHPDDARHYQDMRLRQRHHGHNELLQSVLRFRDRESNWRSFDIREQ 523

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 524 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 564



 Score = 41.1 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 34/188 (18%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR- 427
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+   + 
Sbjct: 230 LAPLIGKCLIGVLLSILPLIALMSLRRRQRQMLQSHRRYRDIFEGAGVAICVMDMSGLQE 289

Query: 428 ------VTTTPDIATILGLASGSMHGPIRNW---------LPYIHINDRDNFRT------ 466
                 V    D   +L     S+   ++           L  + I  R+          
Sbjct: 290 QLEALDVRNGEDFERLLKSQPASLKRLLQQLRISELNEVALSLLDIEHREQAWQPLIEGE 349

Query: 467 ----------ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                     ++ + +  +  RL+ E  +  A  Q   + + +R +  + GD    I   
Sbjct: 350 SRSRPGVGIPVIQAVLAGQ-PRLELEICLTRAGGQDQHLWLVMR-LPETRGDFDAVILSI 407

Query: 517 NDITEQKK 524
            DIT +K+
Sbjct: 408 GDITSRKQ 415


>gi|39995644|ref|NP_951595.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982407|gb|AAR33868.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
          Length = 682

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 151/631 (23%), Positives = 289/631 (45%), Gaps = 17/631 (2%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV--------GGLVLIVILIGFTVIQHV 390
           L     + + +   G           +++ P  V          L   ++ I        
Sbjct: 43  LFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRRPLGDSELAETMLRIFAARASAE 102

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      Q          + +      ++  D  R  +     + + +G     + G   
Sbjct: 103 LERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGKT- 161

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +  I    R      +D  +    G   Y+  +   D     +I       N++G I 
Sbjct: 162 --VFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIG 219

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +G   DITE+K++ E I   A+ D LTG+PNR    DR++ +L  +  +      V+ 
Sbjct: 220 GIVGTILDITERKRAEEAIQQLAYFDALTGLPNRTLLRDRVSQLLSQARREGGG-FGVLH 278

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D++K +ND LG A GD +L ++  RI   ++  D +ARL  + F +IL    +   +
Sbjct: 279 LDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARLGSDEFVVILPGVGHEEDV 338

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + + +  PI +   +I  TASIG A + +   ++  +LKNA++AM+ AK  GG+
Sbjct: 339 VAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGD 398

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             + +    +    +R+ ++  L  A+E  E  L Y P++ +    IVG+EAL++WD P+
Sbjct: 399 GYQFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPE 458

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S + F+ +AEE  +I  I  ++L      + +  +      + + +N++++    +
Sbjct: 459 LGMVSPARFIPLAEETGLIVPIGEWVLRSACEQLRALHE-LGYTELCVSVNVSARQFRHD 517

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             C  + A+++     P  ++L  +ESV+M   E ++ +L +L+++G+SL +DDFGT  S
Sbjct: 518 GFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKLKQMGVSLAIDDFGTGYS 577

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL + P D +K + + +      +   AI  +I+ +A  +   ++A+ +     +  
Sbjct: 578 SLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAF 637

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           L  + CD +Q  H+A PL   ++L+ L+ R 
Sbjct: 638 LAALRCDVVQGYHIARPLPPRNLLEFLEARQ 668


>gi|291571958|dbj|BAI94230.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 1091

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/561 (26%), Positives = 254/561 (45%), Gaps = 15/561 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP---YIHI 458
               +  S A   S   +   D   D     P    I G  +  + G     L        
Sbjct: 537  DQLKMFSRACDQSPVSIVITDSEGDIQYVNPKFEEITGYKAAEVMGQNPRILKSGYTTEP 596

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 +  +       ++     EF  +  + +  W    I PM +  G I  +I +  D
Sbjct: 597  E----YDVLWKQITSGKQ--WSGEFHNKRKNGELFWEHASICPMRDEEGYITHFIAVKED 650

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT+QK + E +   A  D LT +PNR    +RL   +  +  + +    VM ID+D +K 
Sbjct: 651  ITQQKHNEEILAHQANYDALTDLPNRTLVFERLRQAIIQAQVN-HSNVAVMFIDLDHFKN 709

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L     R+   L+  D + RL G+ F +I+ + ++ ++    A  + 
Sbjct: 710  INDTLGHELGDFLLKEAGMRLKGCLRTTDTVGRLGGDEFLVIIPNLDDLIQAEYIATQVL 769

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +  P NL   E  ++ASIG AS+      +S +++NA+  MY AK  G N    F  +
Sbjct: 770  GVLGEPFNLCGEEAFISASIGIASYPQDGNNASTLVRNADTGMYAAKQEGRNVFAFFTQN 829

Query: 699  SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +  I  +  L  A+   EL +VY P I L   +IVG EAL++W +P+ GNI   +
Sbjct: 830  MNDEAQSRIIIENHLRHAINRDELSVVYQPFIHLATAQIVGAEALMRWYNPELGNIRPDQ 889

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  +  ++L +  +++ +W  Q     +++ +N++ + L    L   +  
Sbjct: 890  FIAIAEESRLIVDLGEWILSQACQEVATWHQQ-GNSGLWVAVNMSPRQLRTPNLVNVIIE 948

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             I+    S   ++L  +E  ++      + L+ +L  + I L +DDFGT  S LSYL   
Sbjct: 949  AIANNGLSSDCLELEITERSLVAEVPGVQSLIKQLHSLKIRLAIDDFGTGYSSLSYLKRF 1008

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            PF  +K + S ++     +  IA+++++I MA  +   ++A+ I     +  L   GCDY
Sbjct: 1009 PFSVLKIDKSFISDLPDDQDAIALVKTMITMAHGLGLVVVAEGIETSAQLDFLCNQGCDY 1068

Query: 935  IQDSHVASPLGFNSILKLLKE 955
             Q    + PL        L++
Sbjct: 1069 GQGYLFSKPLPPAEFRAYLQK 1089



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W  ++    +  +  +  ILG    ++     ++L +I+I+D  ++       +  ++
Sbjct: 316 GSWCLNMNTGEMIISDQLYHILGENPQNVSINFEDFLNHIYIDDLYSWVQTYSQSLFTQQ 375

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              +  +R+   D+  HW+  +  P+S+ +  I     I  +I   + +   I   A
Sbjct: 376 N-YRLNYRIIQPDSSMHWVSQQSTPVSDRHNKITHITSIIQEIDSHQIANPSITAEA 431



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 23/144 (15%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q    +      +     R    +  S + +   D     +   P    + G  +  + G
Sbjct: 421 QIANPSITAEAALRESEARLRTIISTSTNGLVVVDCQGRALFINPAAEALFGRQARELEG 480

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                                +        +   E  +   D +   + +R+  +S    
Sbjct: 481 ---------------------EMIGIPLVTKESTELEIFRHDGKLKIVRMRVVEISWE-- 517

Query: 508 DILRYIGIANDITEQKKSLEGILC 531
               Y+    DIT+ KK+ + +  
Sbjct: 518 QETAYLASLTDITDFKKTEDQLKM 541


>gi|218441831|ref|YP_002380160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
 gi|218174559|gb|ACK73292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
          Length = 1027

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 152/565 (26%), Positives = 272/565 (48%), Gaps = 11/565 (1%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            G     +    A   S   V   D              + G     + G     L    I
Sbjct: 467  GAQKQLKILKQATEQSPVSVIITDAEGHIEYVNRKFEKLTGYTRQEVIGKNPRLLKSGKI 526

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            + +D ++ +  +    +      EF  +  + +  W    I P+ N  G I  +I I  D
Sbjct: 527  S-QDQYKQLWRTLTSGQ--EWHGEFHNQKKNGELFWESASISPIKNEEGVITHFIAIKED 583

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT +K     +   A  D LTG+PNR   +DRL   +  +   +  R  VM ID+D++K 
Sbjct: 584  ITRRKAQDRILAYQANYDALTGLPNRFLAIDRLKLAILQAERQEQ-RVAVMFIDLDRFKN 642

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND LG   GD +L  +  R+ + L+  D +ARL G+ F II+ +          A  + 
Sbjct: 643  VNDTLGHEYGDLLLKQVAERLKKCLRKSDTVARLGGDEFLIIIPNLKQPSHCKGIAKKIL 702

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             S+  P NLLE E  ++ASIG   +       + +++NA+ AMY  K  G N  + + + 
Sbjct: 703  SSLEKPFNLLEEEAFISASIGITLYPDDGDDVNALMRNADTAMYLGKRGGRNDFKFYTLG 762

Query: 699  SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               ++R    I+  L  A++  E+YLVY PI+ L  E+++G EAL++W++P+ G +S  +
Sbjct: 763  MNETNRTRIIIENLLHQALKKKEIYLVYQPIMELKTEKVIGAEALLRWNNPQLGQVSPDQ 822

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  +  +++ +  ++++ W+ Q    PI + +N++ +   D++L + +  
Sbjct: 823  FIPIAEETGLINQLGAWVISQACQEVVQWKAQG--TPISVAVNLSPRQFRDSKLLKIITD 880

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             I+    +   ++L  +E +++ +   S+ +L +L ++   L++DDFGT  S LSYL   
Sbjct: 881  AIAVNGITNHDLELEITEKLLLEDSPGSQGILSQLHQMNFPLSIDDFGTGYSALSYLIKF 940

Query: 877  PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            PF+ +K + S +T  T  + A+  +++II M+  +   +IA+ +     +  L   GCDY
Sbjct: 941  PFNRLKIDRSFITDMTHSQKAMGLVKTIIAMSHGLNLQVIAEGVETSEQLNSLKSQGCDY 1000

Query: 935  IQDSHVASPLGFNSILKLLK-ERFP 958
             Q    + PL        L+  + P
Sbjct: 1001 AQGYFFSRPLTGEEFRYYLQLNKNP 1025



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 23/149 (15%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             VI+ + A  +    +    ER S  +  + + +   D     +   P    + G    
Sbjct: 350 IAVIRDISARKHTELALRESEERLSTIISTNPNGLLILDREGKVLFVNPAAEILFGRPKK 409

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G I                  L   V         E  +     +     IR   + 
Sbjct: 410 DLMGQILG----------------LPIIVNNYS-----EIEILQPTGKMVIARIRQVKIL 448

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
               +   ++    D+T+ K + + +   
Sbjct: 449 WEEKEA--FLASLVDVTDLKGAQKQLKIL 475


>gi|114561602|ref|YP_749115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114332895|gb|ABI70277.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1486

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/550 (26%), Positives = 281/550 (51%), Gaps = 10/550 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +    + V   ++     +  P  + I G     + G    +L  +    R+ + ++  
Sbjct: 935  VLFSMNEAVVVGELDYQIRSINPAFSRITGFKHRDVVGKHFLFLT-MGKQSREFYNSVET 993

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              + ++      E  +R  + +     + I  + ++ G+   ++ +  DIT +KK+ E +
Sbjct: 994  QLLRHK--HWAGEIHIRTRNRRGILAWLEINQVIDNKGETSHFVAVFTDITARKKAEEDL 1051

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LTG+PNR  F DRL   +  +   +++   ++ +D+D++K IND +G  +GD
Sbjct: 1052 RVLANFDPLTGLPNRTLFQDRLNQAVTKAHRANSI-VALLFLDLDRFKHINDSMGHHIGD 1110

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L ++  R+   ++  D +ARL G+ F IIL     +      A  +  +   P  L +
Sbjct: 1111 LLLKAVAHRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATIIAEKVLHAFQTPFLLDD 1170

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
            + +T++ SIG + +      ++ ++K A+ AMYHAK  G N+ + +    + + +  V +
Sbjct: 1171 KILTISPSIGISLYPEDADDTTSLIKYADTAMYHAKSLGRNNFQFYTEQLNQYATRHVQL 1230

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +  L  A++++ELYLVY P   +  E+I+GLEAL++W+ P+ G IS  EF+ +AEE  +I
Sbjct: 1231 EAGLKKAIQDNELYLVYQPKYDVKTEKIIGLEALMRWESPELGFISPVEFIPLAEETGII 1290

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I  + +++    +  W  Q     I I +N++++ L   ++   ++  ++ +    S 
Sbjct: 1291 NQIGHWAIQQACNQLAQWHQQ-GFEHISIAVNLSARQLK-ADIISTIEVALAVSGLPASA 1348

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K +   
Sbjct: 1349 LELELTESMIMGNPQDSVTVLSQLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1408

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++ PL 
Sbjct: 1409 VRDITEDPDDAAITSAIITLAHSLELNVVAEGVETQAQLNFLREGGCDQVQGFLLSKPLS 1468

Query: 946  FNSILKLLKE 955
                L LL +
Sbjct: 1469 AVDCLALLTQ 1478



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           + + +     + +      +  GL++I+    +   + V     F   I +  ER  LA+
Sbjct: 758 VNVSVVPPMYMTSTAYILYVTVGLLIIIWFF-YARQKKVAKQREFDNSIRASEERLKLAL 816

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             SGD +WDW+I  D+V  T  +  +      S     +  +  I   DR   + +L+  
Sbjct: 817 WASGDGMWDWNIKDDKVYRTNMVEPM------SFSLKDQLLIKNIDPEDRPRVQKLLNDH 870

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
           +       + E+RV     Q+ W++ R + +  +SN   +R  G   DIT +K
Sbjct: 871 LNGESEFFEAEYRVETKPGQWAWVLDRGQIVERDSNNIPVRMAGTHKDITSRK 923


>gi|313201890|ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           MP688]
 gi|312441206|gb|ADQ85312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 821

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 154/555 (27%), Positives = 273/555 (49%), Gaps = 15/555 (2%)

Query: 410 AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FR 465
           A+  S   +   D+       +        + G +S    G    +L     +DR+    
Sbjct: 265 AIEASATPILIVDVTQPAMPLIYVNRAFELVTGYSSQEAVGRNCRFLQG---HDREQPEL 321

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKK 524
             + + +  R        R    D    W  + + P+ + +G +   ++G+  DITE ++
Sbjct: 322 EKIRTAIRERCPGYAI-LRNYRKDGSLFWNELYVAPVPDPHGGEPRYFVGVQKDITEIRQ 380

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   A  D LTG+ NR    +R+   +  +    N   +V  IDID +K++ND +G
Sbjct: 381 YQEALERQANYDTLTGLANRNLLKERMQQAISEARRH-NWTFSVAFIDIDNFKRVNDSMG 439

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + GD+++  L +R+   L+  D +ARL G+ F ++L S++    I      +R +I  P
Sbjct: 440 HSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTVVQRIRNTIINP 499

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
             +  R++TVT SIG A++      +  +L NA+ AMY AK  G N+   +         
Sbjct: 500 FIITGRQLTVTCSIGLANFPHDGRNADTLLSNADSAMYQAKASGSNNFRFYAKEMNAELG 559

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ ++ DL  A+EN +L L Y P + + + +I+G+EALI+W HPK G I   +F+ ++E
Sbjct: 560 HRLSLENDLWHALENQQLVLHYQPQVCMRNSQIIGMEALIRWQHPKLGMIPPLQFIPLSE 619

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I ++++E  A      +  A  PPI + +N++ + L   +L   ++  +  + 
Sbjct: 620 DDGLIVPIGIWVMETAAHQNRQLQ-LAGYPPIRVAVNLSVRQLEQKDLVHCIEKTLQHSG 678

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  ++L  +ES++M N E S + L R+  +G+ L+LDDFGT  S LSYL  +P + +K
Sbjct: 679 LDPQCLELEITESMLMHNIEESIITLNRISDLGVQLSLDDFGTGYSSLSYLKRLPINRLK 738

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +   T       I RSII +A ++E  +IA+ +        L   GCD +Q   +
Sbjct: 739 IDKSFINDITTTYNDAIIARSIIALAHSLEIQVIAEGVESADQYAFLLENGCDEVQGYLL 798

Query: 941 ASPLGFNSILKLLKE 955
           + P  F  +  LL++
Sbjct: 799 SRPRPFEDMEALLRD 813



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 6/193 (3%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--VIQHVLATG 394
           A  L P    IF+            L N      +   L  +   +       +  +   
Sbjct: 69  ARELAPEIPFIFVSGTIGEETAIHSLKNGAADYIIKNNLSRLPSAVTSALERAEEKILHK 128

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + + +      + +     I +  D     +         L L    + G     L 
Sbjct: 129 RMERELENSNRLFRVFMQNLPAIAFIKDQQGQYIFANASTVDALQLPHEEIIGKHDTML- 187

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                     R      +      +Q+  +   AD+   W++    P+ + +G+     G
Sbjct: 188 -FPPQLAQEMRAAEQQTLAQGEA-IQHVRQFPLADDVKLWLLTTF-PVQDMDGNFNHIGG 244

Query: 515 IANDITEQKKSLE 527
           I  DITEQ+K+ E
Sbjct: 245 IGIDITEQRKAEE 257


>gi|330811842|ref|YP_004356304.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327379950|gb|AEA71300.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1282

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   + N L  +
Sbjct: 714  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLT-V 772

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R +L     +     + E  ++  + + +   + I  + +  GD+  Y+   
Sbjct: 773  DEQQEAHLRYVLKQLQQHST--WEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 830

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL T L  +         +M +D+D++
Sbjct: 831  SDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSADR-QKTWVVLMFLDLDRF 889

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L    +      +  +
Sbjct: 890  KPINDSLGHAAGDRMLKEMATRLLGCVADDDTVARMGGDEFTLLLQPRASREMALNRAIN 949

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 950  VAEQILASLVRPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNNF 1009

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP+ G
Sbjct: 1010 QFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1069

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  +++    R + +W       P  + +NI+++   D +L
Sbjct: 1070 LVPPGDFIPVLEELGLVVDVGDWVIAEACRQLRTWHQAKVRVP-KVSVNISARQFSDGQL 1128

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++  T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1129 GTRIANILRSTGLPPACLELELTESILMREVSEAMQILAGLKNLGLSIAVDDFGTGYSSL 1188

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     +  L 
Sbjct: 1189 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLR 1248

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1249 EHGCDEVQGYLFGRPMPATRFEA 1271



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + V      S+ +    +R  +      D+++  D        +P +  +LG  + 
Sbjct: 565 IGVAKDVTEQIEASESLRDSEQRYRMLAESISDVIFSTDNKLSLNYVSPSVQAVLGYTAD 624

Query: 444 SMHGPIRNWLPYI-HINDR-------DNFRTILD--SFVGYRRGRLQYE---FRVRAADN 490
            +      W   I +           D     LD    +   R ++Q +   F    AD 
Sbjct: 625 WIFQN--GWQSIIANPQQLTGIYSLMDRVSKALDKPEQLAELRNQMQTQLFLFDCLRADG 682

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G     +G+  DI++Q+++ + +   A 
Sbjct: 683 RKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  V    D ++  D++  R + +   +   LG   
Sbjct: 432 ILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYDR 491

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H +D D++  +  +         LQ + R R  + ++    IR +
Sbjct: 492 TELHQMGEYFWEILLHSDDADHYHGLRQAQRRGGYTQLLQCQLRFRHRNGKWRCFDIREQ 551

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  + +  + R IG+A D+TEQ ++ E + 
Sbjct: 552 ALARDRDNQVTRIIGVAKDVTEQIEASESLR 582


>gi|82701763|ref|YP_411329.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82409828|gb|ABB73937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 699

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/585 (25%), Positives = 277/585 (47%), Gaps = 9/585 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              V+          +   S   + +  V  S D +   D+             + G  S
Sbjct: 113 SDIVLVWSFRDITERRQGESYKAQLAAIVESSNDAIIVKDLNGIITGWNAAAEELFGYRS 172

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G + G   + L  I  +  +    I++     +R       R      +   + + I P+
Sbjct: 173 GEIIGS--SILTLIPPDRLEEEDRIMNLVKSGKRTDHFETVRW-GKGKKSIDVSVTISPV 229

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +S G+I+    IA DIT++K+S E I   A  D LTG+PNR  F DR+   ++ ++   
Sbjct: 230 KDSAGNIIGASKIARDITQRKESQERIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYA 289

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             R  ++ +D+D++K IND LG A+GD +L ++  R+   ++  D ++RL G+ F ++L 
Sbjct: 290 -FRLALLFVDLDRFKLINDSLGHAIGDKLLKAVAERMQSTVRQADTVSRLGGDEFVVLLG 348

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             + + + A  A  +   ++ P  + + E+ +TAS+G + +  S    + +++NA+++MY
Sbjct: 349 RIHTATEAARVAEKLIAVLSQPYQIEQHELLLTASVGISIYPDSGKDVNSLMRNADVSMY 408

Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N  + +         +R+ ++ DL  A+   E++ VY P + L    +VG+EA
Sbjct: 409 SAKGQGRNRYQFYSEDLTSGADERLRLEYDLRSALARDEIFPVYQPQLELATGRVVGVEA 468

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G +S + F+ +AE+  +I ++   +L         W +Q       I +N+
Sbjct: 469 LMRWKHPERGLVSPASFIPVAEDSGLILSLGEHILRESCLQARQWHEQQGFEG-TIAVNV 527

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++     N+  + +   ++ +  SP  ++L  +ESVVM   E +   +  L   GI L +
Sbjct: 528 SAVQFRQNDFTDVVLRALADSGLSPECLELELTESVVMHGVESATQKMCFLESRGIKLAI 587

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL     D +K + S +          AI+R+ + M +++   ++A+ +
Sbjct: 588 DDFGTGYSSLSYLRQFAIDRLKIDRSFVRDLPQDTDAKAIIRATVAMGRSLGLRVMAEGV 647

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             E   + L  + CD  Q    A P+  +     LK R P  + +
Sbjct: 648 ETEGQAEYLRSVQCDESQGYLYARPMRPDDFEAWLKGRKPDFRGS 692



 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 38/153 (24%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-----DRVTTT-----------PDIATILGLAS 442
            +         A+  + D +   D        +++                   ILG  +
Sbjct: 6   ELNYSLSVLKAAIEATVDGLLVTDRRGKVLCYNQLYVNMWPIPGELLAHARHQAILGYCA 65

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRIR 500
           G +              D + F   ++             +EFR    + +      R  
Sbjct: 66  GQLR-------------DPEQFLRSIEEIYATLAPESFNVFEFR----NGRVF---ERCA 105

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +    G  +  +    DITE+++        A
Sbjct: 106 KVKTLEGSDIVLVWSFRDITERRQGESYKAQLA 138


>gi|117926670|ref|YP_867287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117610426|gb|ABK45881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 834

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 146/586 (24%), Positives = 269/586 (45%), Gaps = 16/586 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGE---RQSLAV---LGSGDIVWDWDIVRDRVTTTPD 433
             +         +     Q +    +   R  L       + + +   D     +   P 
Sbjct: 228 ATVAQRTAALKTSNEQLKQQMIEREQAQHRLRLTAGVFENTSEAIIITDAANRVMEVNPA 287

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              I G  +  + G    ++   H +  + +  +         G+ Q E   R  + + +
Sbjct: 288 FVRITGYPADEVIGRDPGFMKS-HRHTHEFYAEMWKKIWQ--TGQWQGEIWDRRHNGEIY 344

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              + I  + +  G ++  IGI +DI+  K + E +   AF D LT +PNR  F  RL  
Sbjct: 345 PKWLTINAVYDERGHLVNCIGIFSDISRLKATEERLEQLAFFDCLTKLPNRAHFQSRLDH 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L  +    N +  ++ ID+D +K IND +G   GD +L+   +RI   ++  D +AR+ 
Sbjct: 405 ALTAANRRQN-KVGLIFIDLDHFKHINDSMGHNAGDQLLIEAAKRIQSCVREEDTVARMG 463

Query: 614 GNRFGIILISENNSLKIAD-FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
           G+ F IIL    ++ K+    A+ + +S   PI L ++++ +  S+G A +      ++ 
Sbjct: 464 GDEFTIILADLTDTAKVMTNVALTILESFTHPIVLEDKKLFIGCSLGMAIYPDDSGNAAL 523

Query: 673 MLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++K+A+ AMY AK  G N    +   +++    R+ ++ +L  A+++    L Y P +  
Sbjct: 524 LIKHADTAMYRAKESGRNRYSFYTAEMNAQAQSRISLESELRYAIDHKAFELYYQPKVDA 583

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              EIVG EAL++W HP  G IS ++F+ IAEE  +I AI   ++E   + +        
Sbjct: 584 HSSEIVGFEALLRWIHPTEGVISPNQFIPIAEESGLIAAIGNQVVEMACQGLQRINRCTP 643

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ + IN++ + L  + L       ++       +++L  +ES +    E+S  LL  
Sbjct: 644 K-PLPVAINLSVRQLRQDNLVNYFSQTLANYGIEAEQLELEVTESFLAKPIEKSAALLQA 702

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKN 908
           L ++G  + +DDFGT  S LSYL   P  T+K + S +      ++   I+++II MA  
Sbjct: 703 LHQLGYKIAIDDFGTGYSSLSYLKNFPIHTLKIDRSFVMEVAHNQESRTIVQAIISMAHA 762

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +   ++A+ +     +  L  +GC  +Q  H A P   + IL++L 
Sbjct: 763 LGYDLVAEGVETAAQVNVLQGLGCGIMQGFHYARPAPLHEILEILS 808



 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 94/361 (26%), Gaps = 78/361 (21%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      Q   S   R       + +     D+    +        +LG     +     
Sbjct: 58  LRLEKAKQVQESALARFEALFNSAPEGFILIDVSGMVLECNHTTLEMLGCKREDLIRKP- 116

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +  ++HI D+  F     SF          E R+                  + +    
Sbjct: 117 -FSAFVHIEDQPKFYASYPSFFK-STYPKPIEIRLIHK----------GSAFKHKDH--- 161

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDN---LTGIPNRQSFLDRLTTILDLSATDDN-LRP 566
                  ++T      + +  + + DN   L  I N  +    L   L  +         
Sbjct: 162 ---SFIAELTGCSTLKQDLFKDLYHDNPFILVSIYNINA-HKLLERELADAKQAAELANH 217

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR----------IGELLKFPDILA---RLS 613
            ++                   D +  ++ +R          + + +   +      RL+
Sbjct: 218 ALL----------------ESHDKLEATVAQRTAALKTSNEQLKQQMIEREQAQHRLRLT 261

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
              F     + + ++ I D A  + +     + +                      + E+
Sbjct: 262 AGVF----ENTSEAIIITDAANRVMEVNPAFVRITGYP------------------ADEV 299

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +      M   +H    + E ++           + ++     N E+Y  +  I  + DE
Sbjct: 300 IGRDPGFMKSHRHTHEFYAEMWKKIWQTG---QWQGEIWDRRHNGEIYPKWLTINAVYDE 356

Query: 734 E 734
            
Sbjct: 357 R 357


>gi|237801442|ref|ZP_04589903.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. oryzae str. 1_6]
 gi|331024301|gb|EGI04358.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. oryzae str. 1_6]
          Length = 1254

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L   
Sbjct: 686  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLTV- 744

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               +++     +   +  R G  + E R+R  + + +   + I  + +  GD+  Y+   
Sbjct: 745  -ETEQEAQMRHILKQLDGR-GTWEGEIRLRRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 803  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAER-QKAWVVLMFLDLDRF 861

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L               
Sbjct: 862  KPINDSLGHAAGDRMLQEMATRLLACVDIDDTVARMGGDEFTLLLQPAITREAALNRAIH 921

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ 
Sbjct: 922  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKECGKNNF 981

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 982  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1100

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M   E +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1101 GKRIAGILEQTGLSPACLELELTESILMREVEEAMHILDGLKNLGLSIAVDDFGTGYSSL 1160

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1161 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1220

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
            + GCD +Q      P+       
Sbjct: 1221 QHGCDEVQGYLFGRPMPPGQFEA 1243



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D + D    +P +   LG ++ 
Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGLLDINYVSPSVERALGYSAD 596

Query: 444 SM-----------HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RA 487
            +              +  +   +          +L       R R +   R+       
Sbjct: 597 WIVQNGWSAVLANRQQLAGFDALM-----SRIGKVLKKPRELARLRDEVTTRMFVFDCLR 651

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           AD +   + +R+  + + +G      G+  DI++Q+++ + +   A 
Sbjct: 652 ADGRKIPVELRVVLVWDEHGHFEGIFGVGRDISQQRRAEKDLRMAAT 698



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  V    D ++  D++  R + +       LG ++
Sbjct: 404 ILSIGDITSRKQVELSLQDRESFWSDVVRTVPDHLYVQDVLSQRMIYSNHHFGHTLGYSA 463

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H  D  +++ + L          LQ   R R + N +    +R +
Sbjct: 464 PELRAMGEFFWEVLLHPEDAKSYQDMRLRQRHHGHNELLQSVLRFRDSQNNWRSFDVREQ 523

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  +S   + R IGIA DITEQ       + S +     A
Sbjct: 524 ALAWDSEHRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 564


>gi|297538651|ref|YP_003674420.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257998|gb|ADI29843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 965

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 143/583 (24%), Positives = 258/583 (44%), Gaps = 16/583 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I        LA+    +         +     S + +   D     +   P      G  
Sbjct: 387 IAIIEQYADLASIAIERDRAESELTIAATAFQSQESLLITDANCIILRVNPAFTQSTGYP 446

Query: 442 SGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +  + G     +   +H  D   +  + DS   ++ G  Q E   R  + + +   + I 
Sbjct: 447 ADEVIGKNAYMFKSNLHPAD--FYLEMWDSI--HKTGAWQGEIWARRKNGEVYPKWLTIS 502

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +S  +G +  Y+G   DIT++K + E I   AF D+LTG+PNR+  +DRL   L  SA 
Sbjct: 503 AVSGKDGVVSHYVGSGIDITQRKAAEEEIRNLAFYDSLTGLPNRRLLIDRLKHALAASAR 562

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              +   V+ +D+D +K +ND LG  VGD +L  + +R+    +  D +AR+ G+ F +I
Sbjct: 563 S-KMYGAVLFLDLDNFKTLNDTLGHDVGDLLLQQVAKRLSATSREDDTIARIGGDEFVVI 621

Query: 621 LISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           L + ++     +             +     L + E   + SIG   +   +    E+LK
Sbjct: 622 LENLSDKPMEAAEHAKVICDKYLSILNESYTLSKYECLSSPSIGVTLFNDHQSGIEELLK 681

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A++AMY AK  G N +  F        +  V +  +L +A+E  +  L +   + +   
Sbjct: 682 QADIAMYQAKKAGRNAIRFFDPKMQDAINHLVNLDRELRVAIERQQFQLYFQVQVDIA-G 740

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             +G E LI+W HP+ G I    F+ +AE+  +I  I  ++L+     + +W  +A+   
Sbjct: 741 RPLGAEVLIRWIHPEHGTIFPPTFIPLAEDNGLIFTIGKWVLDMACAQLKAWELEASTRN 800

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + IN+++K     +  + ++  I     +P+ +KL  +ES+++ N E +   +  L++
Sbjct: 801 LKLSINVSAKQFHQADFIKQVKTAIKNHAINPAMLKLELTESMLLDNIEDTIRTMNILKE 860

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           IGI  +LDDFGT  S L YL  +P   +K + S +          AI+R+ I MA+ +  
Sbjct: 861 IGIQFSLDDFGTGYSSLQYLKQLPLTQLKIDKSFVHDIAVDNSDQAIVRTTIVMAQTLNL 920

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +IA+ +        L   GC   Q      P+     +  +K
Sbjct: 921 EVIAEGVETIEQRNVLINSGCTCFQGFLFGQPMPIEQFVDQVK 963


>gi|317152638|ref|YP_004120686.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942889|gb|ADU61940.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 958

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 139/570 (24%), Positives = 268/570 (47%), Gaps = 14/570 (2%)

Query: 392 ATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG- 447
                        +R  L       + + +   D     V   P   TI G  S  + G 
Sbjct: 384 ELRAEIDERTRAEQRLRLYEKVFENALEGISITDKSGVMVAVNPAFTTITGFTSEEVIGK 443

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             R     +H    + F   + + +  R G    E   R  + + +  I+ I  + + +G
Sbjct: 444 NPRVLKSDMH---GEEFYGEMWTTLKAR-GSWHGEIWNRRKNGESYPEILSISSIRDDDG 499

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +I  Y+ + +DI++ K   E +  + + D LTG+PNR   LDRL+  L  +      +  
Sbjct: 500 EIANYVAVFHDISDMKHKEEQLAHHLYHDGLTGLPNRVLVLDRLSMALSHANRT-GTKVA 558

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D +KKIND  G A GD +L ++  R+  L +  D +AR  G+ F ++++  +  
Sbjct: 559 VLFLDLDNFKKINDSFGHAQGDTLLKAVAERLVALYRDEDTVARQGGDEFLVVVVDVHEE 618

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ D A  +++    P  +  +E+ +T SIG   +       + ++KNA++AMY +K +
Sbjct: 619 REVVDLAEGLQRVFEEPFVIKGQEVFITPSIGVTLYPDDGQDPASLVKNADMAMYQSKAK 678

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F        + R+ ++ D+  A++  E  + + P + L   E+ GLEAL++W 
Sbjct: 679 GRNSYFLFTQQMSERIAQRLTLESDMRRALKEREFTVYFQPKVDLASGEVSGLEALVRWV 738

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P    +S  +F+ +AEE  +I  +  F+L+   + +   +       + + +N++    
Sbjct: 739 KPDGIIVSPEDFIPMAEETGLIVPLGEFVLDASCKAMQVLQ-GVGCSALTVAVNLSPIQF 797

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L E + A + +     SR++L  +ES +M + + S   L RL ++GI++++DDFGT
Sbjct: 798 GQEDLVEMVVANLERNGLPASRLELEITESTLMTDVQSSVAQLNRLVELGITISIDDFGT 857

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL   P  T+K + S +      +    I+ +++ MA+ +   ++A+ +  +  
Sbjct: 858 GYSSLYYLKNFPISTLKIDRSFIRDITIDDSDAKIVETVVLMARTMGIGVVAEGVETKEQ 917

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  L   GC  +Q  + + PL    I++ L
Sbjct: 918 LDLLATFGCATVQGYYYSRPLPLEKIIEFL 947


>gi|94265516|ref|ZP_01289264.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93453957|gb|EAT04303.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 1052

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/567 (26%), Positives = 268/567 (47%), Gaps = 13/567 (2%)

Query: 399  GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                  ER  L+   +  + + V   D     +        + G +     G     L  
Sbjct: 490  ERQKREERMRLSSRFLEDTNEAVVITDADARIIEVNRAFEKLTGYSRQEAIGQNPRILQS 549

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             H  D D +R + D+ +    G  + E   R  +N+ H   + I  + +  G I  Y+GI
Sbjct: 550  GHY-DADFYREMWDTLLT--TGHWEGELWSRRKNNELHPKWLSISAVYDQRGRITHYVGI 606

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +ND+T  K++ E +      D LT +PN   F DRL   +  +  +++ +  +++ D+D+
Sbjct: 607  SNDLTATKQTQEKLEELTHYDQLTSLPNILLFRDRLQQAMARARREEH-KVALLIFDLDR 665

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K++ND LG +VGD VL  + +R+ + L   D + R  G+ F ++L    +       A 
Sbjct: 666  FKEVNDSLGHSVGDLVLTEVAQRLRQQLSLADTICRPGGDEFYLLLGRLTDIDTAVQAAQ 725

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             + +  + P    + ++ +T SIG   +         ++++ E AMYHAK  GGN  + F
Sbjct: 726  NVLELFSKPFQAADHQLYLTPSIGITLFPDDGEEVESLIQSVETAMYHAKKDGGNSFQFF 785

Query: 696  RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNI 752
            + +       R+ +K  L  AVE  E  L Y P I      +VG EALI+W  P+  G +
Sbjct: 786  QETMFTAALGRMTMKNRLRRAVELEEFELYYQPKIAADGRTVVGAEALIRWVQPERGGPV 845

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            S +EF+ +AEE  +I  I  ++L +  R  + W+     PP+ I +N+++       L +
Sbjct: 846  SPAEFIPLAEETGLIIPIGEWVLRQACRQSLLWQQAGL-PPLRIAVNLSAVQFKQPGLDD 904

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             +  ++ +       ++L  +ES++M +   +   L +L+ +GI L LDDFGT  S LSY
Sbjct: 905  EINWILQEIGLPAELLELEITESLLMEDVTTANATLWKLKDMGIHLALDDFGTGYSSLSY 964

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P DT+K +   +      ++  A++ +II +A +++  ++A+ +     +  L + 
Sbjct: 965  LKNFPLDTLKIDREFVRDLSTDDEDRAVIITIITLAHSLKMEVVAEGVEDADQVAFLRQR 1024

Query: 931  GCDYIQDSHVASPLGFNSILKLLKERF 957
            GCD  Q  H + PL      + L+ + 
Sbjct: 1025 GCDVFQGYHFSRPLPAKEFEQFLRSQN 1051



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 14/205 (6%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
             + I    +    L+  LI + ++  + +     Q +     +   A   +    W+W 
Sbjct: 41  PANRITLLWLLAAALVTNLIFWLILHQIQSHRRVQQELMVSSSQLRKAQQIAKMGHWEWK 100

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +  + ++  I G    S     + +L  I  +DR   +  + +            
Sbjct: 101 HDDQPLHWSAELYRIFGQDPESYTPDYQAFLATIPEDDRRQVQEAV-AHTQREGVPYDIT 159

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R+R  + +   +  R   + +  G  ++ +G A D+T QK++ E             + 
Sbjct: 160 HRIRLPNGREKIIHERGELIRDEQGRPVKMMGTAQDVTAQKQAEEE------------LQ 207

Query: 543 NRQSFLDRLTTILDLSATDDNLRPT 567
           NR   L  L   + ++ T D     
Sbjct: 208 NRLRLLA-LNAEMGMALTQDRSLEA 231



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 48/155 (30%), Gaps = 8/155 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQ---SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            +  +            +  R    +  V    D +   D     +T       + G  +
Sbjct: 353 SLASLADLIALGLERKQNENRLLTQARIVDQIRDAIITTDPAGLIMTWNQGAQRLFGYTA 412

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                   ++L  +  ++ D ++  +   +  R    Q E  V+       +    +   
Sbjct: 413 QEASHRPLSFL--LAPHELDFYQGQVLPQLRERL-SYQIEIEVQTKHGDRRFADFSLTQF 469

Query: 503 SNSNGDILR--YIGIANDITEQKKSLEGILCNAFQ 535
           S   G   R   I  A DITE++K  E +  ++  
Sbjct: 470 SPEGGGSTRGGIICYARDITERQKREERMRLSSRF 504


>gi|126666371|ref|ZP_01737350.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter sp. ELB17]
 gi|126629172|gb|EAZ99790.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter sp. ELB17]
          Length = 723

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 152/599 (25%), Positives = 278/599 (46%), Gaps = 22/599 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +   +           A     Q +          V  S DIV+  D           I 
Sbjct: 123 MFATLDAALGKQLLFRAHTDVQQRLEKSEALHRYIVNNSPDIVFMLDDKGRFCFINSKIE 182

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--H 493
           ++LG  S  ++G   ++   +   D       L            +E +++   +Q    
Sbjct: 183 SLLGYNSEELNGK--HFRHLLDEQDIARGTHTLQDPSVTPENPRTFEVKLKTRGSQKANR 240

Query: 494 WMIIRIRPMSNSN------------GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           +  I   P+ +              G   R+ G A D+TE+K++   I   A+ D LT +
Sbjct: 241 YFEITAFPIDHETLPLGADFNACTTGPKARFYGTARDVTERKEAEAFINFQAYHDLLTRL 300

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F DRL+  +  ++     +  VM +D+D++K +ND LG A+GD +L  +T+R+  
Sbjct: 301 PNRALFTDRLSLAITQASRSKQ-KLAVMFLDLDRFKVVNDTLGHAMGDVLLQVVTQRLEH 359

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L+  D L+R  G+ F ++L + NNS      A  +  ++  P  L E E+ V  SIG +
Sbjct: 360 CLRKGDTLSRFGGDEFTLLLPAINNSNDARRIAKKLIDALKAPFQLGEHEVFVGVSIGIS 419

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719
            +  + I+  ++++NA++AMYH K RG +    +   ++   ++R+ ++ DL  A+EN+E
Sbjct: 420 LYPEAGISMDQLIQNADIAMYHVKARGKDGYRFYSESMNIDTANRLSLERDLRQALENNE 479

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L + Y P +      IVGLEAL++W HP  G +   +F+ +AEE  +I A++  +L +  
Sbjct: 480 LRVYYQPQVCAKSGRIVGLEALVRWQHPDRGLLYPKDFLPLAEETKLIVALSEQVLAQAC 539

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R +  W        + + +N++   +      E +   +    +  S +++  +E+V+M 
Sbjct: 540 RQVKGWI-LDGNRDLRLAVNMSPIQVEHPRFVEILIRQLKNEEFPASHLEIEITENVIMN 598

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           + E+    L +L   G+ + +DDFGT  S L+YL  +P  T+K + S + G    E    
Sbjct: 599 DLEQISQKLRQLADYGVRIAIDDFGTGYSSLNYLHQLPIHTLKVDQSFVRGIGNGEDGAC 658

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+ +I+ MA  ++  IIA+ +  +  +  L  +GC  IQ           +I ++L  +
Sbjct: 659 IVNAIVAMAHGLKLDIIAEGVETDAQLAYLRGLGCQQIQGFLYGPAQPPEAISRMLDGQ 717


>gi|71906994|ref|YP_284581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846615|gb|AAZ46111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 862

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 152/563 (26%), Positives = 262/563 (46%), Gaps = 19/563 (3%)

Query: 402 SDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI 458
              E+  +A     S   +   D  R             G ++    G   R      H 
Sbjct: 267 QSEEQLRIAAAAFESQTCMIITDANRVIQRVNRAFIETTGYSAEEAVGQTPRLLQSGRHG 326

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D   +R + ++   +R G  Q E   R  + + +   + I  +  +NG +  YIG  ND
Sbjct: 327 AD--FYREMWETI--HRTGAWQGEIWGRRKNGEVYPKWLSISAVVGTNGRVSHYIGTHND 382

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+KK+ E I   AF D LTG+PNR   LDRL   +  S   D+    ++ ID+D +K 
Sbjct: 383 ITERKKAEERINALAFFDQLTGLPNRTLLLDRLKQTILSSGRSDS-HGALLFIDLDNFKT 441

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADF 633
           +ND LG  VGD +L  +  R+   ++  D +ARL G+ F ++L + N      +      
Sbjct: 442 LNDTLGHDVGDQLLKQVALRLTHCVRDGDTVARLGGDEFVVVLANLNTNDKEAAQDTETV 501

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  ++     L       +ASIG   +    I   +++K A+L+MY AK  G N V 
Sbjct: 502 AEKILATLNQTYQLGHVTHHSSASIGATLFKGPLIPIDDLMKQADLSMYKAKAAGRNAVR 561

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  S   + +V   +++DL  A+   +  L Y    +++ E + G E L++W HP+ G 
Sbjct: 562 FFDPSMEIAVKVRAEMEDDLLRALAEKQFLLHY--QAQMVGERLTGAEVLLRWQHPQRGM 619

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S +EF+ +AEE  +I  +  ++LE     +  W  +  +  + + +N+++     N+  
Sbjct: 620 VSPAEFIPLAEETGLILPLGHWVLETACTQLAQWAGRPEVAHLTLAVNVSAHQFRQNDFV 679

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  ++ KT  +P R+KL  +ES+++ N E     +  L+  G+  +LDDFGT  S LS
Sbjct: 680 DQVLGVLEKTGANPQRLKLELTESLLVENVEDIIDKMAALKHRGVGFSLDDFGTGYSSLS 739

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +    +     +I R+I+ +A ++   +IA+ +  E     L  
Sbjct: 740 YLKRLPLDHLKIDQSFVRDVLTDSNDASIARTIVALANSLGLGVIAEGVETEAQRDFLAS 799

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
            GC   Q  + + PL        
Sbjct: 800 SGCHTYQGYYFSRPLPIEDFESF 822



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++        Q + +   R       + D +   D           +  +LG  +  + G
Sbjct: 4   RYRRLVIRLEQALRTSEARLHSFFDATPDALLISDAHGTITMANQQVEKLLGYVAAELVG 63

Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             I + +P          R+   +    RR       + R  D     + + +  +    
Sbjct: 64  KSIEDLVPNRFKASHPVLRSEFTASPRARRMGNGMAVKARRKDGSECDVDVSLSRIETDE 123

Query: 507 GDILRYIGIANDITEQKKSLEGILCN 532
           G  + +     DI+E+K+  E +   
Sbjct: 124 G--MFFASALRDISERKRKEEELRRQ 147



 Score = 39.5 bits (91), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 48/161 (29%), Gaps = 19/161 (11%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              + ++ +       + +       S         +  +D     V        +L L 
Sbjct: 126 FFASALRDISERKRKEEELRRQNGVLSTIFQSFPGGITLFDADLRLVAFNDQFKALLDLP 185

Query: 442 SGSMHGPIRNWLPYIH---------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
                 P  ++   I            D +     +   +   +  + ++      D   
Sbjct: 186 DVLFEQPEPDFETLIRYNAARGEYGPGDPEQQVAAI---IARTKKFVPHKIERVRPDGT- 241

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               + IR +  ++G    ++ I  DIT++K+S E +   A
Sbjct: 242 ---SLSIRGVPLASG---GFLSIYTDITDRKQSEEQLRIAA 276


>gi|304412197|ref|ZP_07393806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307306941|ref|ZP_07586681.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304349463|gb|EFM13872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306910519|gb|EFN40949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1508

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P    I G     +         +IH       R+ F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            TI    + ++      E  +R    Q   + + I  + +  G+   ++ +  DIT++KK+
Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD +L ++ RR+   ++  D +ARL G+ F IIL     +      +  + ++   P 
Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A++ +EL LVY P   L D  + G+EAL++W H + G IS  EF+ +AEE
Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++ +  + +  W        I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A +++  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LLK +
Sbjct: 1488 KPLSAADFLTLLKNQ 1502



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
             F   I +  ER  LA+  SGD +WDW+I  ++V  T   ++I    S ++        
Sbjct: 822 REFETSIRASEERLKLALWASGDGMWDWNIPENQVYRTNMDSSIPHWNSSNIVH------ 875

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512
             +H  DR+ F+  L+  +  R    + E+RV  +   + W++ R + +  +S  + +R 
Sbjct: 876 ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDNPIRM 935

Query: 513 IGIANDITEQK 523
            G   +IT +K
Sbjct: 936 TGTNRNITSRK 946


>gi|53804441|ref|YP_113700.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758202|gb|AAU92493.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 712

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 156/642 (24%), Positives = 286/642 (44%), Gaps = 12/642 (1%)

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
           V        Y  + G   +V++  A            +         +    +   +V  
Sbjct: 73  VTLIILLGKYLWIAGILASVVMSEAVTAAMGLLFKGEVTYDYLATGMVAALFVSAIMVTA 132

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATI 437
           ++ +     +        ++ + +   R    +  + D +   D     +        T+
Sbjct: 133 IMKMEELE-RRRQEEVAKNRALRASERRYRTLIEVASDAILVTDSETGTLVDCNRQAETL 191

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG++   + G     L     +       +L   +  + G +  E  +  AD     + +
Sbjct: 192 LGMSRNEIIGRHLCNLQQTGNDADGAETDLLGHMLRGKTGTI--ELSLVRADGTTVPVEV 249

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                   +G      G   DIT+++++ + I   A  D LT +PNR     RL   ++L
Sbjct: 250 SSST-FEMDGR-RYVHGAFRDITQRREAEDRIKHLAHHDPLTNLPNRVFLHGRLEQAIEL 307

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  + N +  VM ID+D +K+IND LG  +GD +L  +  R+ E +    ++ RL G+ F
Sbjct: 308 ARREQN-QVAVMFIDLDNFKRINDTLGHRIGDALLEQVAARLTENVPGSQVVGRLGGDEF 366

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +++     S   A  A  + +S+  P  + + ++   ASIG A + +   ++  ++K+A
Sbjct: 367 IVVITGNRVSTTSAAMAERILESLCRPYTVEDYQLHSGASIGIAIYPADGNSAETLMKHA 426

Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMYHAK RG N  E F  +  R   +R+ I+  L  A+++    L Y P I L    I
Sbjct: 427 DAAMYHAKSRGRNTFEFFSQAINRGVRERLDIENGLRDALKHGGFKLHYQPQIDLTTGSI 486

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             +EAL++W HP  G I+   F+ IAEE  +I  + L++++R    + +WR+   +  + 
Sbjct: 487 CSVEALLRWRHPLLGVIAPDRFIPIAEETKLILPLGLWVIDRACHQLRAWRND-GIAGVR 545

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ K L D    E + +++ +   S S I+L  +ES +M N  R + LL  L+  G
Sbjct: 546 MAVNVSVKQLQDESFFEALGSIVERHGLSGSDIELEITESAIMENLSRVQALLKSLQDYG 605

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           I+L++DDFGT  S L  L  +P  ++K + S +           I   II +  ++   I
Sbjct: 606 ITLSIDDFGTGYSSLGRLKLLPIQSLKIDRSFVHDIETDHGNAKICDGIIALGHSLGLKI 665

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           IA+ +  +     L   GCD IQ   +A PL  + + KL+ +
Sbjct: 666 IAEGVETDAQKNLLQNSGCDAIQGFLIAKPLPADDVAKLITQ 707


>gi|126176238|ref|YP_001052387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125999443|gb|ABN63518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1508

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P    I G     +         +IH       R+ F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            TI    + ++      E  +R    Q   + + I  + +  G+   ++ +  DIT++KK+
Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD +L ++ RR+   ++  D +ARL G+ F IIL     +      +  + ++   P 
Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A++ +EL LVY P   L D  + G+EAL++W H + G IS  EF+ +AEE
Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++ +  + +  W        I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A +++  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LLK +
Sbjct: 1488 KPLSAADFLTLLKNQ 1502



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
             F   I +  ER  LA+  SGD +WDW+I  ++V  T   ++I    S ++        
Sbjct: 822 REFETSIRASEERLKLALWASGDGMWDWNIPENQVYRTNMDSSIPHWNSSNIVH------ 875

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512
             +H  DR+ F+  L+  +  R    + E+RV  +   + W++ R + +  +S  + +R 
Sbjct: 876 ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDNPIRM 935

Query: 513 IGIANDITEQK 523
            G   +IT +K
Sbjct: 936 TGTNRNITSRK 946


>gi|331018900|gb|EGH98956.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            lachrymans str. M302278PT]
          Length = 1250

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V          G     +   +   L  +
Sbjct: 682  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRASGYEVAQVLDQLPGMLT-V 740

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 741  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 798

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 799  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 857

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 858  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 917

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 918  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKERGKNNF 977

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 978  QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1037

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1038 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1096

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1097 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1156

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1157 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1216

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+       
Sbjct: 1217 EHGCDEVQGYLFGRPMPPKQFEA 1239



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 533 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 592

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 593 WI--TRNGWSAAIANPQQLTGFDALISRISKVLHKPQELARLRDEVTTRMFLFDCLRADG 650

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 651 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 694



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +      +    +H +D  +++ + L          LQ
Sbjct: 440 LSQRMIYSNHHFGHTLGYNKFELRAMGEFFWEILLHPDDAKSYQDMRLRQRHHGHNELLQ 499

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 500 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 559

Query: 533 A 533
           A
Sbjct: 560 A 560


>gi|291614972|ref|YP_003525129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291585084|gb|ADE12742.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1347

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/570 (25%), Positives = 264/570 (46%), Gaps = 10/570 (1%)

Query: 391  LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                   +       + +     S + +   D+    +      A I G     + G   
Sbjct: 777  FRDITERKQTEDALRQGAAVFESSHNGIIITDLDGHILAANQAYADISGYTESELLGQNP 836

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
              L       RD +R +  +      G  Q E   R  + + +   + +  + N  G   
Sbjct: 837  RILNS-GRQSRDFYRKMWANIKE--AGSWQGELWNRRKNGEIYPTWLAVSAVRNDQGKAT 893

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             Y+GI++D+++ +++       A  D LT +PNR      LT  L  +    N +  V+ 
Sbjct: 894  HYVGISSDLSQLRQTEAEREHLAHYDPLTDLPNRLLLRSHLTHALAQAKRHHN-QVGVLY 952

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            +D+D++K IND LG  VGD++LV+LT R+   ++  D+LARL G+ F ++L   N     
Sbjct: 953  LDLDRFKNINDSLGYQVGDELLVTLTERLTMHMRSEDLLARLGGDEFLLVLEHINEPEDS 1012

Query: 631  ADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A ++ +++A P  L   REI + ASIG + + +   ++ +++++A+ AM+ AK  G 
Sbjct: 1013 AIVARSLLETLAQPFVLHGEREIFIGASIGISIFPNDGDSAEQLIQHADAAMHQAKTLGR 1072

Query: 690  NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            N    +        ++ + ++  L  A+  ++L + Y P + +    I+G EAL++W  P
Sbjct: 1073 NTYHFYTEDLSRASNEHLELENRLRHAITANQLRVYYQPQVDIATGHIIGAEALVRWQDP 1132

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            + G +   +F+ +AEE  +I AI  ++L+      + W D    P + + +N++    L 
Sbjct: 1133 ERGLVQPGQFIPLAEETGLIGAIGEWVLKETCLQGMRWIDAGL-PFLTLAVNLSPHQFLR 1191

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              +   +  ++++T +   R++L  +ES +M   E    +L  LR   I L +DDFGT  
Sbjct: 1192 GNIAGLISKVLAETGFPADRLELELTESALMQQGEDVIKMLHLLRAQDIRLAIDDFGTGY 1251

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S LSYL   P D +K + S +      +  + I  +II M   +   ++A+ +     ++
Sbjct: 1252 SSLSYLKRFPLDILKIDKSFVDDIPFHQDDMEIAATIIAMGHILGFKVLAEGVETREQLE 1311

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             L   GCD  Q    + P+      KLLKE
Sbjct: 1312 FLQARGCDLYQGYLTSPPIPAEEFEKLLKE 1341



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 12/199 (6%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           MA+   +   +   A++   V+   ++     Q  L     +       ++  L      
Sbjct: 367 MALPNEMIFWLGLVAILIVFVVTSAVMLIWRQQQRLHRMELANRSSEQDKQLKLFYDLPF 426

Query: 416 DIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +        R V     +  +LG +   +      W+   H +D        +  V  
Sbjct: 427 IGMAITSPATKRWVYANDRLCDMLGYSRDDLLKT--AWIDLTHPDDVAGNLKEFERMVAG 484

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-CNA 533
                  E R    D     + + ++    ++G     + + +DIT++K++   +    A
Sbjct: 485 ETDGFNIEKRFIRKDGSPITVNLDVKCTRRADGKPDLIVALVDDITQRKQTELALRAKEA 544

Query: 534 FQDNLTGIPNRQSFLDRLT 552
                     R  F + L 
Sbjct: 545 TY--------RSLFDNMLN 555



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 8/152 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLAS 442
             V + +         +    +R       + D +   D    +       IA +LG ++
Sbjct: 649 VVVSEDITERKQAETALRDSEDRFRSIFNNAIDGILLADSGTRKFIMGNSAIARMLGYSN 708

Query: 443 GSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +   ++     IH   D++ +       V      L     V+  D    +  I+  P
Sbjct: 709 EEL---LQLGTEDIHPEQDKEYYIAQFAMMVRGES-TLSSNAVVKRKDGSVFYADIKASP 764

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +    GD +  +G   DITE+K++ + +   A
Sbjct: 765 LRI--GDKVYLMGFFRDITERKQTEDALRQGA 794


>gi|39997142|ref|NP_953093.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984032|gb|AAR35420.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298506155|gb|ADI84878.1| sensor diguanylate cyclase/phosphodiesterase, GAF and PAS_4
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 762

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 151/603 (25%), Positives = 272/603 (45%), Gaps = 25/603 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWD-- 420
           + Q A    +VL  + +   +  H       +       ++ +     +    D V +  
Sbjct: 150 LQQYAHTASMVLRTVRLMVDLRHHAAMLEEENDERTRAEQKLAETNVFLNSVVDGVAEPM 209

Query: 421 --WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT------ILDSFV 472
               + R  + T         ++     G        IH  D    R       +LD   
Sbjct: 210 VVVGLDRRVIMTNRAARDFFQISD---VGSDEACHRLIHHRDTPCVREEGMQCPLLDVRT 266

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R      E R R+ D +   ++    P+  S+G  +  I    DIT+++++ E I   
Sbjct: 267 AKRPVIATQEHRDRSGDKRVVEVMTS--PLLGSDGVAIGIIEAFRDITDRRQAEETIRQM 324

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D+LTG+PNR+ F DRL   L L+  +  L  +V+ +D+D++K IND LG AVGD +L
Sbjct: 325 AYYDSLTGLPNRRLFNDRLRQSLALAQRNKRL-LSVLFLDLDRFKLINDTLGHAVGDKLL 383

Query: 593 VSLTRRIGE-LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           + + +R+     +  D +AR  G+ F I L   ++       A  +  S+  P  +   E
Sbjct: 384 MQVAKRLKGVCRRDGDTVARQGGDEFIINLSVISDVKDALKVAQKIIDSLRTPFVIDGHE 443

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKE 709
           + +T SIG + +     TS  ++KNA+ AMY AK +G N+ + +         +R+ ++ 
Sbjct: 444 LFITTSIGISVFPYDGRTSDALVKNADFAMYRAKEQGRNNCQLYTPEMNSKAFERLSLEN 503

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L   +E  EL L Y P + + D +I  +EAL++W HP  G +  + F+ +AEE  +I  
Sbjct: 504 NLRKGLEREELVLYYQPKVNVEDGQISCMEALVRWQHPTMGLVPPARFIPLAEETGLIVP 563

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L    R    W+     PP+ + +NI+ + L    L + ++  +S +  +P  + 
Sbjct: 564 LGEWVLRTACRQNREWQKA-GYPPMQVAVNISPRQLQQGNLVDVVERALSDSGLAPRWLV 622

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++M   E +      L ++GI + +DDFGT  S L YL   P   +K + S + 
Sbjct: 623 LEVTESIMMDGTESTLATFRVLERMGIHIAIDDFGTGYSSLHYLKKFPIHALKIDRSFIR 682

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI  ++I MAK +   ++A+ +     ++ L  + C ++Q    + P    
Sbjct: 683 DITTNPDDEAITSAVITMAKGLNLKVVAEGVETVEQLEVLRALQCTHMQGHLFSRPAPAE 742

Query: 948 SIL 950
              
Sbjct: 743 QFA 745


>gi|302187996|ref|ZP_07264669.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 1251

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 262/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 683  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 741

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                    R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 742  ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 799

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 800  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 858

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 859  KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 918

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 919  VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 978

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 979  QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 1038

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1039 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1097

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1098 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1157

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1158 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1217

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+       
Sbjct: 1218 EHDCDEVQGYLFGRPMPPAQFEA 1240



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 534 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 593

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490
            +      W   I +      F  ++D             RL+ E  +R        AD 
Sbjct: 594 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 651

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 652 SKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 695



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 401 ILSIGDITSRKQVELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 460

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H +D  N++ + L          LQ   R R  ++ +    IR +
Sbjct: 461 SELHAMGEFFWEVLLHPDDARNYQDMRLRQRHHGHNELLQRVLRFRDRESNWRSFDIREQ 520

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 521 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 561



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 32/187 (17%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+     
Sbjct: 227 LAPLIGKCLIGLLLSILPLIALMSLRRRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 286

Query: 426 --DRVTTT--PDIATILGLASGSM----------------------HGPIRNWLPYIHIN 459
             + +  +   D   +L     S+                          + W P I   
Sbjct: 287 QLEALEVSTEEDFERLLKSQPASLRRLLQQLHISELNEVALSLLNIEHSEQAWQPLIEGE 346

Query: 460 DRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            R        +   V   + RL+ E  +  AD Q   + + +R +  +  D    I    
Sbjct: 347 SRSRPGVGIPIIQAVLTGQPRLELEICLTRADGQDQHLWLVMR-LPETRSDFDAVILSIG 405

Query: 518 DITEQKK 524
           DIT +K+
Sbjct: 406 DITSRKQ 412


>gi|119472850|ref|ZP_01614757.1| putative orphan protein; putative conserved domain [Alteromonadales
           bacterium TW-7]
 gi|119444682|gb|EAW25989.1| putative orphan protein; putative conserved domain [Alteromonadales
           bacterium TW-7]
          Length = 985

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 154/644 (23%), Positives = 290/644 (45%), Gaps = 11/644 (1%)

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
           +    + + Y   +     +  +  VL     ++  +   G     T+  + +  +   +
Sbjct: 336 LKFFGLFILYAILVALLLHQALQHLVLRRLHSLVYAVSSFGQGKLDTQFPEENKDEIGTL 395

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            G    + +    +I  +       +       R S AV  SG  V   D         P
Sbjct: 396 NGSFKDMTVEIRKLIDGLNQRITEKEIAEKAANRLSKAVAFSGTGVVITDENFVIEYVNP 455

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +  + G          R  L  I  +D       +D  +  R    + +  + + D Q 
Sbjct: 456 KMLEMTGYPESHFT---RAPLLNIIASDMAILVEDIDIDLRSRN-YWRGDTLIESKDKQP 511

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W+ + + P+    G+I  Y+  A DI+  K+S   +   A+ D LTG+ NR  F  +L 
Sbjct: 512 IWVSLSVSPIREEGGNITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLR 571

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L L+    +   ++   D+D++K+IND LG   GD +L+ +  R+ + L+  D +ARL
Sbjct: 572 KSLALAER-GHYAFSLFYFDLDEFKRINDTLGHDAGDQLLIQVANRLKKRLRSEDTIARL 630

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L    +     D A  +++++ MPI L   E+ ++ASIG        +   +
Sbjct: 631 GGDEFAVLLSGIESQEHATDVANTIQQTLNMPIMLGNNEVIISASIGITMAPYDSLEEDQ 690

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730
           +LK+A+LAMY AK +G N    +      +    +  + +L +A++  +  + Y P I  
Sbjct: 691 LLKHADLAMYEAKEKGRNTFHFYSQELNAAANERLFIENELRIALKEDQFVVYYQPQIDS 750

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             +++VG EAL++W HP  G I   +F+ IAE   +I  +  ++L+     ++   +Q  
Sbjct: 751 RTQKVVGYEALLRWFHPTEGLIPPDKFIPIAEATGLIVELGEWVLQESCDFVVRLTEQNR 810

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + IN++++   D+ L   +  +I  +  S  R+ L  +ES++MGN E +   L  
Sbjct: 811 ENN--VSINLSARQFKDSNLVPTLSKMIITSGVSAKRLHLELTESMLMGNVEAAIAQLHE 868

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+ +GIS+++DDFGT  S LSYL   P D +K + S +         + I  +II MA+ 
Sbjct: 869 LKALGISISIDDFGTGYSSLSYLKRFPVDILKIDRSFVQDIPEDSNDMEITAAIIAMAQK 928

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   ++A+ +     ++ L    C  +Q  + + P+  + +  L
Sbjct: 929 LNLDVVAEGVETIEQVEFLQNNNCFIVQGYYYSRPIPESDLPDL 972


>gi|94264524|ref|ZP_01288311.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93455083|gb|EAT05310.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 694

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/567 (25%), Positives = 268/567 (47%), Gaps = 13/567 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 ER  L+   +  + + V   D     +        + G +     G     L  
Sbjct: 132 ERQKREERMRLSSRFLEDTNEAVVITDADARIIEVNRAFEKLTGYSRQEAIGQNPRILQS 191

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D D +R + D+ +    G  + E   R  +N+ H   + I  + +  G I  Y+GI
Sbjct: 192 GHY-DADFYREMWDTLLT--TGHWEGELWSRRKNNELHPKWLSISAVYDQRGRITHYVGI 248

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           +ND+T  K++ E +      D LT +PN   F DRL   +  +  +++ +  +++ D+D+
Sbjct: 249 SNDLTATKQTQEKLEELTHYDQLTSLPNILLFRDRLQQAMARARREEH-KVALLIFDLDR 307

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND LG +VGD VL  + +R+ + L   D + R  G+ F ++L    +       + 
Sbjct: 308 FKEVNDSLGHSVGDLVLTEVAQRLRQQLSLADTICRPGGDEFYLLLGRLTDIDTAVQASQ 367

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + +  + P    + ++ +T SIG   +         ++++ E AMYHAK  GGN  + F
Sbjct: 368 NVLELFSKPFQAADHQLYLTPSIGITLFPDDGEEVESLIQSVETAMYHAKKDGGNSFQFF 427

Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNI 752
           + +       R+ +K  L  AVE  E  L Y P I      +VG EALI+W  P+  G +
Sbjct: 428 QETMFTAALGRMTMKNRLRRAVELEEFELYYQPKIAADGRTVVGAEALIRWVQPERGGPV 487

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ +AEE  +I  I  ++L +  R  + W+     PP+ I +N+++       L +
Sbjct: 488 SPAEFIPLAEETGLIIPIGEWVLRQACRQSLLWQQAGL-PPLRIAVNLSAVQFKQPGLDD 546

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +       ++L  +ES++M +   +   L +L+ +GI L LDDFGT  S LSY
Sbjct: 547 EINWILQEIGLPAELLELEITESLLMEDVTTANATLWKLKDMGIHLALDDFGTGYSSLSY 606

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P DT+K +   +      ++  A++ +II +A +++  ++A+ +     +  L + 
Sbjct: 607 LKNFPLDTLKIDREFVRDLSTDDEDRAVIITIITLAHSLKMEVVAEGVEDADQVAFLRQR 666

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GCD  Q  H + PL      + L+ + 
Sbjct: 667 GCDVFQGYHFSRPLPAKEFEQFLRSQN 693



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 8/149 (5%)

Query: 392 ATGYFSQGIFSDGERQ---SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                      +  R    +  V    D +   D     +T       + G  +      
Sbjct: 1   DLIALGLERKQNENRLLTQARIVDQIRDAIITTDPAGLIMTWNQGAQRLFGYTAQEASHR 60

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             ++L  +  ++ D ++  +   +  R    Q E  V+       +    +   S   G 
Sbjct: 61  PLSFL--LAPHELDFYQGQVLPQLRERL-SYQIEIEVQTKHGDRRFADFSLTQFSPEGGG 117

Query: 509 ILR--YIGIANDITEQKKSLEGILCNAFQ 535
             R   I  A DITE++K  E +  ++  
Sbjct: 118 STRGGIICYARDITERQKREERMRLSSRF 146


>gi|74318446|ref|YP_316186.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057941|gb|AAZ98381.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 954

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 138/575 (24%), Positives = 260/575 (45%), Gaps = 14/575 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                 S+ +    +    A   +    WDW I  +R+  +  I  + GL  G       
Sbjct: 367 RQIALASRQLGETKDSLDRAQRIAQMGNWDWYIAENRLFWSEGIYRLFGLRQGQFEASYE 426

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +L  ++ +DR      +   +         + R+   D     +      + ++ G   
Sbjct: 427 AFLVRVYPSDRAAVDAAVQRAL-NTGAPYALDHRIVRPDGSVRVVHETGEVLLDALGKPS 485

Query: 511 RYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           R IG   D+T  +++ +        +   A+ D LT +PNR   LDRL   +  +     
Sbjct: 486 RMIGTVQDVTHWREAEQALREKDAHLEHVAYHDPLTDLPNRALLLDRLRAAVSRNGRTGG 545

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  V+ ID+D++K IND LG AVGD VL +   R+  L +  D LARL G+ F ++L  
Sbjct: 546 -RLAVVFIDLDRFKTINDSLGHAVGDAVLQAAASRLRSLTRDGDTLARLGGDEFVLLLDG 604

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++      A  +  ++   +++    + ++ASIG + +      +  +L++A+ AMY 
Sbjct: 605 LRDNAAAGAVAEKIITALERMLHVGSYPLHISASIGISLYPEDGRDAEALLRHADAAMYK 664

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           +K RG N    +    +     R+ ++  L  A ++  L + Y P++RL    I G EAL
Sbjct: 665 SKERGRNTFHFYEHGITERAMRRLQLESRLRRAFDDRTLQVHYQPLVRLDTGHICGAEAL 724

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINI 800
           ++W+ P+ G I    F+ +AE+  +I  I  +++      +  W  +  +P    + +N+
Sbjct: 725 LRWNDPEAGAIPPDHFIALAEDTGLIVPIGEWVVGEACEALKRWETEILLPADFALHVNL 784

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + K LL  +L   +    ++   SP+R+ L  +ES +M +      ++  LR+ G+ + +
Sbjct: 785 SGKQLLQKDLPTRLSDAFTRAGVSPARVVLELTESSIMESEATGVAVMTALREFGVEIAI 844

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LS L  +P   +K + S +          AI+++I+ ++  +   +IA+ +
Sbjct: 845 DDFGTGHSSLSRLKLLPISELKIDRSFIRDIAVDSDDAAIVQAILALSAKLGLGVIAEGV 904

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                   L + GC   Q    A P+  + +++LL
Sbjct: 905 EHAEQEAFLMQHGCLRAQGYRYARPMPEDELIRLL 939


>gi|253998253|ref|YP_003050316.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253984932|gb|ACT49789.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylovorus sp. SIP3-4]
          Length = 984

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 139/614 (22%), Positives = 269/614 (43%), Gaps = 13/614 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           + I             +I+       V    L     I          +       +  +
Sbjct: 373 FVIIPIFVHAHWWGVIMIERDHAASTVTSQELGALMSIGRSFGVAIQRESSDHRLHQAKI 432

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467
           A   + + ++  D     +        I G     + G I N L                
Sbjct: 433 AFESTAEGIFITDDELRTIAINQGFTDITGYTEDDVLGNIPNVLEADLKKPEPHREIWKA 492

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L      R GR + EF  +  +N+ +   + +  ++N  G ++ Y+G+  DI+E K S  
Sbjct: 493 L-----TREGRWRGEFWNQRKNNEQYAEWVTLTAVNNEEGKVINYVGVFADISEIKHSQS 547

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +     +D LTG+PNR+   + L   +  +  + N    ++ +D+D++K IND LG  +
Sbjct: 548 RLNELVNRDPLTGLPNRRLMHELLDHAIKYAEREQN-EIALLFVDLDRFKAINDTLGHQM 606

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +++RI   ++  D +ARL G+ F +++         A  A  +  S+     +
Sbjct: 607 GDKLLFEVSQRIRAAVRDSDAVARLGGDEFIVMMDVLREREDAAKVAKKIISSLQNEFLI 666

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705
             RE+ ++AS+G + +    +    ++K A++AMY  K++G N+   +         +R 
Sbjct: 667 DGRELFISASVGISVYPDDSLDVDGLIKAADIAMYQVKNKGKNNHCFYSADLSQNAVERF 726

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L  A+   +  + Y   + L    I+G E+LI+W HP+ G +S ++F+ +AEE  
Sbjct: 727 TLENQLRRALARDQFEVYYQAQVSLETGRIIGAESLIRWIHPELGVVSPAKFIPLAEETG 786

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++L + A  +  W DQ      ++ +N++   +  +   + +  ++ +T    
Sbjct: 787 LIIPIGEWVLRQSAMQVKEWHDQGFDID-WVSVNVSGVQIQRSNFADTVYGILVETDCES 845

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES VM N E    +  R++ +G+ L +DDFGT  S LS+L  +P D +K + 
Sbjct: 846 HLLELEITESTVMHNTEYVIDVFDRIKHLGVRLAIDDFGTGYSSLSHLKRLPLDKIKIDQ 905

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          AI  +I  MA+++  T+IA+ +        L ++GC   Q    + P
Sbjct: 906 SFVRDLPNNSDDAAIATAINAMAQSLGFTVIAEGVETRQQASFLKKIGCQQGQGYLYSRP 965

Query: 944 LGFNSILKLLKERF 957
           +  +    LL+   
Sbjct: 966 VTASEFTALLRAEQ 979



 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           +Q V         + S        +  S D +   D     +       ++L L    + 
Sbjct: 106 MQDVTERFASEYELRSMLNLLRKLIDASPDYICLKDGAGRWLHANTSGLSLLHLNGVNTQ 165

Query: 446 HGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               R      H N RD  +     D +V      L+ E  V         + +   P+ 
Sbjct: 166 GKTDRELADLTHPNLRDFMQHWQAADEYVWETGQLLREEETVPLPGGD-RVLDVIKVPLF 224

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538
           + +G     + +  DIT++K+    +    A  D L
Sbjct: 225 HDDGSRHGIVTLGRDITDRKQVESQLRQRSAILDAL 260


>gi|115265595|dbj|BAF32857.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            actinidiae]
          Length = 1278

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 710  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 769  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 826

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 885

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 886  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 945

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ 
Sbjct: 946  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNNF 1005

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G  AL++W HP+ G
Sbjct: 1006 QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAGALLRWRHPRRG 1065

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1185 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1244

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1245 EHGCDEVQGFLFGRPMPPSQFEA 1267



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDTHLTVNYVSPSVERALGYSAD 620

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 621 WI--TRNGWSAAIANPQQLTGFDALISRISKVLNKPQELARLRDEVTTRMFLFDCLRADG 678

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 679 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 722



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +H     +    +H  D  +++ + L          LQ
Sbjct: 468 LSQRMIYSNHHFGHTLGYNKFELHAMGEFFWEILLHPEDAKSYQDMRLRQRHHGHNELLQ 527

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 528 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 587

Query: 533 A 533
           A
Sbjct: 588 A 588


>gi|82702732|ref|YP_412298.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410797|gb|ABB74906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 688

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 273/575 (47%), Gaps = 9/575 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                    +   S   + +  +  S D +   D+             I G  +  + G 
Sbjct: 119 WSFRDITERRQGESYKAQLAAILDSSNDALIIKDLNGIISGWNTGAERIFGYRASEIIGS 178

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +    I  +  +    I++     ++       R      +   + + I P+ ++ G 
Sbjct: 179 PIS--RLIPPDRLEEEDRIMNLVKSGKQTNHLETVRW-GKGKKPIDVSVTISPVKDNAGH 235

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+    IA+DIT++K+SL+ I   A  D LTG+PNR  F DR+   ++ ++     R  +
Sbjct: 236 IVGAYKIAHDITQRKESLKRIEYLAHYDLLTGLPNRALFTDRMRIAIENASRYA-FRLAL 294

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K IND LG A+GD +L ++  R+   ++  D ++RL G+ F ++L   + + 
Sbjct: 295 LFVDLDRFKLINDSLGHAIGDKLLRAVAERMQSTVRQADTVSRLGGDEFVVLLGRIHTAT 354

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           + A  A  +   ++ P  + + E+ +TAS+G + +  S    + +++NA+++MY AK +G
Sbjct: 355 EAARVAEKLIAVLSQPYQIEQHELLLTASVGISIYPDSGKDVNSLMRNADVSMYSAKGQG 414

Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N  + +         +R+ ++ DL  A+   E++ VY P + L    +VG+EAL++W H
Sbjct: 415 RNRYQFYSEDLTSGADERLRLEYDLRSALARDEIFPVYQPQLELATGRVVGVEALMRWKH 474

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S + F+ +AE+  +I ++   +L         W +Q       I +N+++    
Sbjct: 475 PERGLVSPASFIPVAEDSGLILSLGEHILRESCLQARQWHEQQGFEG-TIAVNVSAVQFR 533

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            N+  + +   ++ +  SP  ++L  +ESVVM   E +   +  L   GI L +DDFGT 
Sbjct: 534 QNDFTDVVLRALADSGLSPECLELELTESVVMHGVESATQKMCFLESRGIKLAIDDFGTG 593

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL     D +K + S +          AI+R+I+ M +++   +I + +  E   
Sbjct: 594 YSSLSYLRQFAIDRLKIDRSFVRDLPQDTDAKAIIRAIVGMGRSLGLRVIVEGVETEGQA 653

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           + L  + CD  Q    A P+  +     +K R P+
Sbjct: 654 EYLRSVQCDESQGYLYARPMRPDDFEAWVKTRNPV 688


>gi|294677710|ref|YP_003578325.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476530|gb|ADE85918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 831

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 149/576 (25%), Positives = 266/576 (46%), Gaps = 12/576 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           T+++ +  T      +    E+   A+  +    W W  + DRV  +       GL   +
Sbjct: 256 TILRDITETMQIFDALRQSEEKLRFALEAARAGWWQWHCLEDRVICSERFLQQHGLDPAA 315

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMS 503
               +  WL  +H  DR   R ++   +         ++RV   D +   W+    R   
Sbjct: 316 GPVTLAGWLARLHPEDRSGVRALVLGALESGGRDQALQYRVALPDGRGPRWIEAFGRIER 375

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G   R  GI+ D+T++ +++E I   A  D LTG+PNR  FLDRL   L        
Sbjct: 376 DAAGRAQRVNGISFDVTDRFEAVERIAYLAHHDGLTGLPNRALFLDRLEAALGRVRHARG 435

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V++ID+D++K++N+ LG A GD +L ++  R+   +   D LARL G+ F ++L  
Sbjct: 436 --CAVLLIDLDRFKEVNETLGHAAGDRLLCAVAARLRAEVSAADTLARLGGDEFAVLLTE 493

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 ++  A  +  +I    +L  R I + AS+G A   S  ++   ++K A++A+  
Sbjct: 494 TEAPQTVSALAERLIAAIEAEFDLDGRRIGIGASLGIAMAPSDGLSPKALVKAADVALCR 553

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G   +  F   S    +    ++ DL  A    +  L + PI+ +    +  LEAL
Sbjct: 554 AKADGSGCLRFFAPESDSRMQQRRALESDLRRAWAARDFQLFFQPIVEMKTRRVSCLEAL 613

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +S   F+ +AEE+ +I  I  ++L         W        + + +N++
Sbjct: 614 LRWHHPERGWVSPETFIPLAEEMGLIVPIGEWVLTEACAAAARWP-----GSLRVAVNLS 668

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L    L E + A + +T  + +R++L  +E+V+M     +   L RL+ IG+ + +D
Sbjct: 669 PVQLAHIGLAEAIAAALRRTGLAANRLELEITETVMMKETPATLATLERLKGIGLRIAMD 728

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S L  L   PFD VK + +   G   +++  AI+R++  M +++     A+ + 
Sbjct: 729 DFGAGYSSLRNLQRFPFDKVKIDRAFTAGLGTSQQSAAIVRAVTGMCQSLGMVSTAEGVE 788

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E  +  L R GC  +Q    + P+    +  LL  
Sbjct: 789 TETQLAALAREGCSEVQGYLFSKPVPAAQVGALLAR 824


>gi|171059262|ref|YP_001791611.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Leptothrix cholodnii SP-6]
 gi|170776707|gb|ACB34846.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptothrix cholodnii SP-6]
          Length = 1066

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 146/578 (25%), Positives = 263/578 (45%), Gaps = 14/578 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            + + H LA             R  L   A+  + D V   D+    V+       I G +
Sbjct: 480  SDMSHALAQFTREAQWQESLARTRLHAAALESTQDGVMVTDLRPRIVSVNRAFTEITGYS 539

Query: 442  SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G   R      H  +   F  + +  + +  GR Q E + R  + + +   + + 
Sbjct: 540  ETEAVGMSPRLLQSGRH--EPAFFTRLWNQLLTH--GRWQGEVQNRRKNGELYTQWMSVS 595

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             + + +     Y+ +  DIT QK++ + +   A  D LT +PNR   L RL   +  +A 
Sbjct: 596  TVRDEHDQPTHYVSVFTDITPQKEAEQRLQHLAHFDPLTQLPNRLMVLSRLEHAIASAAR 655

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             +  R  V+ ID+D +K +ND LG + GDD+L ++  R+G   +  D L RL G+ F ++
Sbjct: 656  AER-RVAVLFIDLDNFKTVNDSLGHSAGDDLLRAVADRLGTRTRREDTLGRLGGDEFILM 714

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L         A  A  +   +  P  +  +E+ V ASIG + +    +   E++++A+ A
Sbjct: 715  LEHLREPQDAAQVAQELIGLLETPFRVAGQEVYVQASIGISLYPDDGLEVGELVRDADAA 774

Query: 681  MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            MY AK  G      +  S  +    R+ +   L  A+EN E  L Y P+ RL D  ++GL
Sbjct: 775  MYQAKRAGRGVYRFYTESLTTAAQSRLALDTRLRRALENKEFVLWYQPLYRLADRCLIGL 834

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++ + P    I  +EF+ + EE   I  +  ++ +   R   +W D+       I I
Sbjct: 835  EALVRLNQPGLPPIGPAEFIPLLEETGQITTLGAWVTQEACRQGRAWLDEGLDFG-RIAI 893

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++ +++   +  E ++  + ++     R++L  +ES +M   ER+   L RLR +G+ L
Sbjct: 894  NLSPQEIRRGQTDERVREALERSGLPAERLELELTESGLMEQGERAEAFLHRLRALGVRL 953

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             +DDFGT  S L+YL   P   +K + S +           ++++++ M +N+  +++A+
Sbjct: 954  AIDDFGTGYSSLAYLKRFPVSKLKIDRSFVRDLPADANDAQLVQTMVSMGRNLGISVLAE 1013

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +  E     L  +GCD  Q    + P   +     L+
Sbjct: 1014 GVETEAQFDYLRSLGCDAAQGYFFSPPRPADEARHWLR 1051



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 33/199 (16%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +    L     L + L+G  +++           + +        +    D+ + +D
Sbjct: 175 QRWLTLFTLGLLSALAITLMGV-LMRLSRQRNESDAALAASEAHLRTFMRAMPDVSFLFD 233

Query: 423 IVRDRVTT-TPD------IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
                +    P       +  +LG     +HG              + F +++   +  R
Sbjct: 234 RDGRYLDVFGPAEKLAEPVERMLGRRIADVHGERH----------VELFMSVIRLALETR 283

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             + + EF +        W   R+  + +      + + ++ DI+E++ +   +      
Sbjct: 284 EPQ-RCEFALEVQQGT-RWFEARVCAVPDRE----QVVWVSWDISERRAAELRVT----- 332

Query: 536 DNLTGIPNRQSFLDRLTTI 554
             LT +    SF+ ++   
Sbjct: 333 -ELTRLY---SFISQVNQA 347


>gi|209519031|ref|ZP_03267839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. H160]
 gi|209500543|gb|EEA00591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. H160]
          Length = 1028

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 267/555 (48%), Gaps = 14/555 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G     + G     L     +DRD 
Sbjct: 469  QSRALDASVNAILITAPSPSGNLIEYVNPAFMRITGYDPAEVIGQDCRVLQR---DDRDQ 525

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ N+NG I  +IG+ ND+TE 
Sbjct: 526  EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNANGVITHHIGVINDVTEL 584

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D LT +PNR    DRL   L ++    +    V+ +D+D +K +ND 
Sbjct: 585  IRYQEQLEYQANYDGLTRLPNRNLLRDRLEHALVVAQRH-HAGVAVVFLDLDGFKNVNDS 643

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SIA
Sbjct: 644  LGHSVGDRLLGVVAERLARCSRTSDTVARHGGDEFVIVMTDVVDEQSLIAWMERVRASIA 703

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A++AMY AK  G N  + ++     S
Sbjct: 704  EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADVAMYRAKDMGRNTYQFYQPEMNAS 763

Query: 703  D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ + E  L Y P + +   +IVG+EAL++W  P+ G +  S F+ +
Sbjct: 764  AGARLNLERRLRRALRDKEFLLHYQPQVDIGSGQIVGIEALVRWHDPEVGLVPPSSFIPL 823

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+D+   PP  + +N++++     ++ + +  ++ +
Sbjct: 824  AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLDE 882

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 883  TGLEPKYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 942

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 943  LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLRERACDEMQGF 1002

Query: 939  HVASPLGFNSILKLL 953
            + A PL   +I +LL
Sbjct: 1003 YFAKPLSTEAISELL 1017



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 16/167 (9%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L  +     F +   V              +     +      ++  D+    +      
Sbjct: 314 LNFVGRDASFVLADDVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWKDLNSRYLGCNMAF 373

Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           A   GLA    + G      P R +   +  +D +   T +           + +F +  
Sbjct: 374 ARDAGLAYPEQVVGKSDADLPWRAFADMLTEHDHEVASTGVPKM------NFEVDFMI-- 425

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            D      I    P ++ +G ++  +G   DITE+K++   +   + 
Sbjct: 426 -DGVHRTTITSKLPFTDVDGRVIGVLGSYTDITERKRADLALRLQSR 471


>gi|332702442|ref|ZP_08422530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332552591|gb|EGJ49635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1249

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 274/577 (47%), Gaps = 11/577 (1%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               +  +       Q +             S   +   D     +     +  + G    
Sbjct: 672  LFSLMDLSDVKQAEQALVEQRAFFQELFESSPLGIMLLDTEGQILNVNRGLERLFGYGRE 731

Query: 444  SMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G        +   +R           V  R    Q E   +  + +   + +   P+
Sbjct: 732  ELRGHFS--RSALVPEERAMEAENFFRLVVAGR--PFQSETWRKHKNGELIPVSVVGYPV 787

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                G I     I +DI+E+K   E +   AF D LTG+PNR  F +RL   L+ +    
Sbjct: 788  LME-GKIKGVYSIFSDISERKAFEEQLTHQAFHDALTGLPNRLLFHERLERALERAKRRP 846

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            + R  V+++D+D++K +ND LG   GD++LV ++RR+   L+  D +ARL G+ FG++L 
Sbjct: 847  DYRFAVLLVDLDRFKWVNDSLGHMAGDELLVGISRRMECCLRSMDTVARLGGDEFGVLLE 906

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               N  +I      +   I  P  +    +  +ASIG    T   +T+ ++L++A++AMY
Sbjct: 907  EFRNHREIVQITKRILSVIEEPFIVEGTTVFTSASIGMVLRTREYMTAEDLLRDADIAMY 966

Query: 683  HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G    + F   +       + ++ +L  AV+N EL + Y PI+ ++   + G EA
Sbjct: 967  RAKEMGKARFKVFNRLMHENAVRVLRLETELRHAVQNEELRVHYQPIVSVLSGRLEGFEA 1026

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILIN 799
            L +W+HP+ G +  +EF+ +AEE  +I ++  ++L    R +  W  +      + + +N
Sbjct: 1027 LARWEHPERGLVQPAEFIPLAEETGLIVSLGKWILTEACRQLACWDVECPEACGLNMSVN 1086

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            I+ K L+  +L E +Q ++ +T  +P R+KL  +ESVVM + + +   L  L+ +G++L 
Sbjct: 1087 ISGKQLMQEDLVEFIQGVLRETGIAPQRLKLEITESVVMQDVKATVDKLNELKTLGVALV 1146

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S LSYL   P D +K + S ++G   T   + I+R+I+ +A+N+   ++A+ 
Sbjct: 1147 IDDFGTGYSSLSYLQRFPIDMLKIDRSFISGLQGTGDNLEIIRTILSLARNLGLGVVAEG 1206

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +     ++ L  + CD  Q    + P+       L++
Sbjct: 1207 VELASQLQTLRDLDCDEAQGFMFSRPVAREEAKALIR 1243



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 12/98 (12%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P      G    ++ G   + +         N   ++   +  R      E     AD
Sbjct: 476 CNPAAEAAFGYNQANLAGKPLSTILG------GNGSGLMRELLAGR----SLEVLCHRAD 525

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                    +   +  +G     IG   DITE++++ E
Sbjct: 526 GSRFPAEALVTEATTGSGR--FCIGTFRDITERRRAEE 561


>gi|313200326|ref|YP_004038984.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312439642|gb|ADQ83748.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylovorus sp. MP688]
          Length = 984

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 139/614 (22%), Positives = 269/614 (43%), Gaps = 13/614 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           + I             +I+       V    L     I          +       +  +
Sbjct: 373 FVIIPIFVHAHWWGVIMIERDHAASTVTSQELGALMSIGRSFGVAIQRESSDHRLHQAKI 432

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467
           A   + + ++  D     +        I G     + G I N L                
Sbjct: 433 AFESTAEGIFITDDELRTIAINQGFTDITGYTEDDVLGNIPNVLEADLKKPEPHREIWKA 492

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L      R GR + EF  +  +N+ +   + +  ++N  G ++ Y+G+  DI+E K S  
Sbjct: 493 L-----TREGRWRGEFWNQRKNNEQYAEWVTLTAVNNEEGKVINYVGVFADISEIKHSQS 547

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +     +D LTG+PNR+   + L   +  +  + N    ++ +D+D++K IND LG  +
Sbjct: 548 RLNELVNRDPLTGLPNRRLMHELLDHAIKYAEREQN-EIALLFVDLDRFKAINDTLGHQM 606

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +++RI   ++  D +ARL G+ F +++         A  A  +  S+     +
Sbjct: 607 GDKLLFEVSQRIRAAVRDSDAVARLGGDEFIVMMDVLREREDAAKVAKKIISSLQNEFLI 666

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705
             RE+ ++AS+G + +    +    ++K A++AMY  K++G N+   +         +R 
Sbjct: 667 DGRELFISASVGISVYPDDSLDVDGLIKAADIAMYQVKNKGKNNHCFYSADLSQNAVERF 726

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L  A+   +  + Y   + L    I+G E+LI+W HP+ G +S ++F+ +AEE  
Sbjct: 727 TLENQLRRALARDQFEVYYQAQVSLETGRIIGAESLIRWIHPELGVVSPAKFIPLAEETG 786

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++L + A  +  W DQ      ++ +N++   +  +   + +  ++ +T    
Sbjct: 787 LIIPIGEWVLRQSAMQVKEWHDQGFDID-WVSVNVSGVQIQRSNFADTVYGILVETDCES 845

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES VM N E    +  R++ +G+ L +DDFGT  S LS+L  +P D +K + 
Sbjct: 846 HLLELEITESTVMHNTEYVIDVFDRIKHLGVRLAIDDFGTGYSSLSHLKRLPLDKIKIDQ 905

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          AI  +I  MA+++  T+IA+ +        L ++GC   Q    + P
Sbjct: 906 SFVRDLPNNSDDAAIATAINAMAQSLGFTVIAEGVETRQQASFLKKIGCQQGQGYLYSRP 965

Query: 944 LGFNSILKLLKERF 957
           +  +    LL+   
Sbjct: 966 VTASEFTALLRAEQ 979



 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           +Q V         + S        +  S D +   D     +       ++L L    + 
Sbjct: 106 MQDVTERFASEYELRSMLNLLRKLIDASPDYICLKDGAGRWLHANTSGLSLLHLNGVNTQ 165

Query: 446 HGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               R      H N RD  +     D +V      L+ E  V         + +   P+ 
Sbjct: 166 GKTDRELADLTHPNLRDFMQHWQAADEYVWETGQLLREEETVPLPGGD-RVLDVIKVPLF 224

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538
           + +G     + +  DIT++K+    +    A  D L
Sbjct: 225 HDDGSRHGIVTLGRDITDRKQVESQLRQRSAILDAL 260


>gi|153002528|ref|YP_001368209.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367146|gb|ABS10146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1508

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P    I G     +         +IH       R+ F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            TI    + ++      E  +R    Q   + + I  + +  G+   ++ +  DIT++KK+
Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD +L ++ RR+   ++  D +ARL G+ F IIL     +      +  + ++   P 
Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A++ +EL LVY P   L D  + G+EAL++W H + G IS  EF+ +AEE
Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++ +  + +  W        I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A +++  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LLK +
Sbjct: 1488 KPLSAADFLTLLKNQ 1502



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
             F   I +  ER  LA+  SGD +WDW+I  ++V  T   ++I    S ++        
Sbjct: 822 REFETSIRASEERLKLALWASGDGMWDWNIPENQVYRTNMDSSIPHWNSSNIVH------ 875

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512
             +H  DR+ F+  L+  +  R    + E+RV  +   + W++ R + +  +S  + +R 
Sbjct: 876 ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDNPIRM 935

Query: 513 IGIANDITEQK 523
            G   +IT +K
Sbjct: 936 TGTNRNITSRK 946


>gi|114776422|ref|ZP_01451467.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
 gi|114553252|gb|EAU55650.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
          Length = 644

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/637 (22%), Positives = 267/637 (41%), Gaps = 14/637 (2%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           +I+  +        L P      +               ++        +V +++L G  
Sbjct: 9   MIWLAILLAFVYWFLEPTIYAFVLQKGTFTDKWLHPDAEEL---RTRMSVVSLLLLFGVY 65

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
               +       + + +  ++    +  + D     D         P    I G      
Sbjct: 66  AQTMLKRQQQIMESLQASKQKIRQIIDTANDAFITIDAEGSISDWNPMAEMIFGWPEDLA 125

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPM 502
            G     L  ++   R+     +  F+          Q        D       + I P 
Sbjct: 126 IGKSMMDL-IMNQAPRNALIDDIQEFINTGSAPFTQGQIVITALHRDGHEFPAEMSISPQ 184

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             + G    +     DI+++K   E +   A +D LTG+ NR S+   L   + L+    
Sbjct: 185 --AVGASFIFNIFVRDISQRKADEEKLETLATRDELTGLINRFSYNHLLKKEVALAKRH- 241

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V+ +D+D +K IND LG  VGD +L     R+   ++  D +AR+ G+ F II+ 
Sbjct: 242 MESLAVLFLDLDGFKNINDSLGHDVGDQLLRETANRLSACIRESDTVARIGGDEFLIIMP 301

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +          +   I  P  +  +E  V ASIG + +         ++KNA+ AMY
Sbjct: 302 GIKDVHDPRFLCERILNMIGQPYLIGTQECFVGASIGISLYPLDGDNVESLVKNADTAMY 361

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N  + F  +       R+ ++  L  A+E ++  L+Y P + L    I+G+EA
Sbjct: 362 QAKDSGRNAYKFFTPAMGEEAFKRMEMERALRYAIEKNQFKLLYQPQVELSSGRILGVEA 421

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+WG IS S F+ + E   +I  I  ++L+   +   +W+      P+ + +N 
Sbjct: 422 LLRWTHPEWGPISPSVFISLIENTNLILPIGEWVLDEACKQNKAWQALHPGFPLRMAVNF 481

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A++     +L E +   + K+  +   ++L  +E   M + E +   +  L+++G+S+ +
Sbjct: 482 AARQFAQADLVETVAKALQKSGLAAEFLELEITEGSAMNDIELNIRKMQALKELGVSIAI 541

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P D +K + S +      +K  AI+ +I  MA ++   +IA+ +
Sbjct: 542 DDFGTGFSSLAYLKRFPIDILKIDKSFLDEIQHGKKDAAIVATISEMAHSLGMEVIAEGV 601

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  ++ L   GCD IQ    + P+    I ++L++
Sbjct: 602 ETKYQLEFLRGHGCDMIQGYLFSRPVPPEQIAEILQK 638


>gi|160877248|ref|YP_001556564.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862770|gb|ABX51304.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315269453|gb|ADT96306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1508

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/555 (26%), Positives = 274/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P    I G     +         +IH       R+ F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            TI    + ++      E  +R    Q   + + I  + +  G+   ++ +  DIT++KK+
Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD +L ++ RR+   ++  D +ARL G+ F IIL     +      +  + ++   P 
Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A++ +EL LVY P   L D  + G+EAL++W H + G IS  EF+ +AEE
Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKDGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++ +  + +  W        I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A +++  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LLK +
Sbjct: 1488 KPLSAADFLTLLKNQ 1502



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                 F   I +  ER  LA+  SGD +WDW+I  ++V  T   ++I    S ++    
Sbjct: 818 RQQQREFETSIRASEERLKLALWASGDGMWDWNIAENQVYRTNMDSSIPHWNSSNIAH-- 875

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508
                 +H  DR+ F+  L+  +  R    + E+RV  +   + W++ R + +  +S  +
Sbjct: 876 ----ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDN 931

Query: 509 ILRYIGIANDITEQK 523
            +R  G   +IT +K
Sbjct: 932 PIRMTGTNRNITSRK 946


>gi|114319850|ref|YP_741533.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226244|gb|ABI56043.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 723

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 139/606 (22%), Positives = 268/606 (44%), Gaps = 17/606 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R  ++ I+       +L  +       +           +          V  S D ++ 
Sbjct: 112 RGASEFIRKPFAPEAMLATLENTLERRRLSRQNEQIRHRLKRSERLYRFIVDNSPDFIYV 171

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D              +LG+   ++ G   ++   I   DR       +     +R    
Sbjct: 172 LDAEGRFTFINRSAERLLGMTPDTLLG--EHFQCLIADEDRAVAERRFNERRTGQRATHN 229

Query: 481 YEFRVRAAD--NQF-HWMIIRIRPMSNSN-----GDILRYIGIANDITEQKKSLEGILCN 532
            E ++       Q    + +    +         G  L   GIA D+T++K +   +   
Sbjct: 230 LELQLAPPGAAGQPTRTVDLTAMGIYADGDAPHPGQFLGTYGIARDVTDRKHAESIVHYQ 289

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR    DRL   L  +    N    V+ +D+D++K +ND LG +VGD +L
Sbjct: 290 AHHDLLTGLPNRALLKDRLAQALARARR-GNEEVAVLFLDLDRFKVVNDSLGHSVGDQLL 348

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + +R+   L+  D LARL G+ F ++L +  +   +   A     ++  P  +    +
Sbjct: 349 QQVAQRLRACLREGDTLARLGGDEFTLLLPAIPDRPAVERVAQKCIDALEQPFMVHNHRL 408

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710
            +  SIG A +     T   ++K+A++AMYH K  G  H   F  +        + ++  
Sbjct: 409 FLGVSIGIALFPEHGETLETLIKHADVAMYHVKEHGKGHYTFFDQAMGSRIDHHLNMETG 468

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  E  + Y P + ++   + G+EALI+W HP+ G +S  EF+ +AE+  +I  I
Sbjct: 469 LRRALEQHEFRVAYQPQVDVVSGRVTGMEALIRWQHPETGEVSPREFIPVAEQTGLILPI 528

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L     +++ W D      + + +N++   +   +  + ++A+  +T +   R+ L
Sbjct: 529 GEWLLRSACEELLRWPD--GNEGLRLAVNLSPLQVHQRDFVDRVRAICDETGFPLRRLDL 586

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+++M + E     L  L ++G+++T+DDFGT  S L YL  +P   +K + S +  
Sbjct: 587 EITENLLMRDVESVVEKLRTLSRLGVTITIDDFGTGYSSLGYLQRLPIHALKIDQSFVHA 646

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               E++  ++ +II MA  +   ++A+ +  +  +  L R+ C  +Q  + + PL  + 
Sbjct: 647 IRENEEKGTLVETIIAMAHGLGLNVVAEGVETKRQLDYLRRLQCGRMQGFYFSYPLSGHE 706

Query: 949 ILKLLK 954
            + LL+
Sbjct: 707 AVDLLE 712


>gi|23957808|gb|AAN40821.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 592

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 152/573 (26%), Positives = 278/573 (48%), Gaps = 8/573 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +I  +         + +  ER  L      D+V         +  +P    +LG +S  
Sbjct: 19  GLIIDISDRKKIEAELQTSEERYRLLAENMNDLVCLHQADGTYLYVSPSAEALLGFSSEE 78

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           M G       + H  D D  R      V      L   +R+R     + W     +P+ +
Sbjct: 79  MVGQNPY--DFFHPEDCDRIRDEAHQAVL-MGAELPIVYRMRKKLGGYIWFETLTKPIMD 135

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G ++     + D+T++ +    +  +A  D+LTG+ NR   ++RL   L  S    N 
Sbjct: 136 DQGVVIGLQTTSRDVTQRIEIQNQLQYDACHDSLTGLANRNLLIERLELSLKRSKRLQNY 195

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K IND LG   GD +LVS+ +++  +++  D+ ARL G+ F +++   
Sbjct: 196 KYAVLFLDLDRFKVINDSLGHITGDQLLVSIAQKLQSIIRSHDLAARLGGDEFVVLVEDI 255

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    A  +  +I +P+ L ER I  + SIG    +    +++++L++A+ AMY A
Sbjct: 256 QTFDEPIKVAERILAAIQVPLELEERSIYTSTSIGIVFGSHEYESATQLLRDADTAMYRA 315

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG    E F   + S    R+ ++ DL  A+   E  L Y PII+L   +I G EALI
Sbjct: 316 KSRGRARYEVFDSAMHSQALARLHLENDLRQAIARQEFVLYYQPIIQLQTGKITGFEALI 375

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIA 801
           +W HP  G     + + IAEE  +I +I+ ++L +  R +  W+   +    + + +N++
Sbjct: 376 RWQHPTEGIKLPIDLIPIAEETGLITSIDYWVLNQACRQLSEWQASYSQAADLSMSVNLS 435

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +++L  + L + +Q+++  T   P  + L  +ES+++ N +++  LL  + + GI +++D
Sbjct: 436 AQNLQHDHLMDEIQSVLQATKIKPGSLTLEITESMLIENTDQTIQLLAAINEQGIEISID 495

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P + +K +GS +   T +     I+ +II +   +    IA+ I 
Sbjct: 496 DFGTGYSSLSYLHKLPVNNLKVDGSFVRKITTESTNYQIVNTIIALNNQLGLKAIAEGIE 555

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               +  L+++G  Y Q    A PL    + +L
Sbjct: 556 THEQLDLLSQLGYQYGQGYLFARPLNAKDVEQL 588


>gi|291612794|ref|YP_003522951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291582906|gb|ADE10564.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 812

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 166/643 (25%), Positives = 284/643 (44%), Gaps = 32/643 (4%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--- 395
           LLI   I++ I        +  R    I++       + +   +   V   +        
Sbjct: 170 LLILGHIMLQILLFFAINWLINRFTRPIVKLQSTMESMQLSGSMEQFVPVKLEQGEQDEI 229

Query: 396 ---------FSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                     S+ + +      LA      + D +   D     V   P    I G    
Sbjct: 230 GKLGLAFNQMSEALSNSERSMKLAASIYQSNADAIMVTDENNLIVDVNPAFTRITGYTLD 289

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G   R      H  D + +R +  + +    G  Q E   +    + +  +  I  +
Sbjct: 290 EVRGKNPRIMQSGKH--DNEFYRHMWQAILNE--GHWQGEIWDKRKTGEIYAKLAHISIL 345

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             S+G + R++   +DITE+K+  E I   A  D LT +PNR+   DRL   L  +  ++
Sbjct: 346 RRSDGGVYRHVAQFSDITEKKQKDELIFWQANYDALTCLPNRRLLNDRLAHALAANKRNE 405

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    +M +D+DK+K +ND LG A GD +LV + RRI   ++  D +AR+ G+ F ++L 
Sbjct: 406 DC-GALMFLDLDKFKTLNDTLGHAYGDMLLVEVARRIKSCVREVDTVARIGGDEFVVLLE 464

Query: 623 SE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           +      + +   A  A  +R S++ P  L ++    + SIG +    +  ++ E++K A
Sbjct: 465 NLGADIKDATQAAAHIAEKIRASLSTPYQLHDKMHHSSPSIGVSLIHCNGESAEELIKQA 524

Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK  G N V  F     +       ++ DL  AV   +L L Y   +       
Sbjct: 525 DMAMYQAKEAGRNAVRFFDPQMQQSVETIAALESDLRHAVHERQLQLFYQIQLDH-THHP 583

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EAL++W HP  G +S ++F+  AEE  +I  I  ++L+   R I +W  Q     + 
Sbjct: 584 VGAEALLRWIHPVRGMVSPAQFIPFAEESSLILDIGHWVLDEACRQIAAWSHQERTRDLV 643

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-I 854
           + +NI+++     +  E + A+I K    P+R+KL  +ES+ +   +     +  LR  +
Sbjct: 644 LAVNISARQFKQPDFVEQVGAMIRKHAIQPARLKLELTESIALEELDVIITKMHALRNGL 703

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           GISL+LDDFGT  S LSYL  +P D +K + S +           ++++II MA N    
Sbjct: 704 GISLSLDDFGTGYSSLSYLKRLPLDQIKIDQSFVRDMTVDSGDAVMVKTIIDMAHNFGIE 763

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +IA+ +        L + GC   Q      P+       LL++
Sbjct: 764 VIAEGVETAGQFFLLKQYGCLLFQGYLFGRPVPLREFEALLQQ 806


>gi|119896980|ref|YP_932193.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669393|emb|CAL93306.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 818

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/583 (24%), Positives = 267/583 (45%), Gaps = 17/583 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             L G   +Q +       Q +       +     +G+ V   D     +        I 
Sbjct: 244 AALAGIGTVQDITDRKLAEQSLRQA----ATVFENTGEGVIIADAKNRIIAVNRAFTVIT 299

Query: 439 GLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G     + G   N L    H  D   +  +      +  G  Q E   R  + +    ++
Sbjct: 300 GYGPEEVIGRSPNLLRSGRH--DAAYYDAMWRGV--HEAGHWQGEIWNRRKNGEIFPELL 355

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + + NG +  Y+G+ +DI+  K++   +   A  D LT +PNR     RL   ++ 
Sbjct: 356 TLSVVRDHNGKVSHYVGVFSDISRMKETEARLQRLAHYDALTDLPNRVLLNLRLAHGVER 415

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                 +   V+ +DID++K +ND LG  VGD++L+ + RR+   ++  D LARL G+ F
Sbjct: 416 VQRSGEM-LAVLFLDIDRFKNVNDSLGHPVGDELLIEIARRLRSRIRAEDTLARLGGDEF 474

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKN 676
            I+L    ++  +ADFA  +   +     L   +E+ V ASIG + +      +++++ N
Sbjct: 475 VILLDRIRSANDVADFAQEIIDLLNQSFQLASGQEVFVGASIGISLYPLDTDDATQLISN 534

Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ A+Y AK  G N    +         +R+ ++  L   +E  E  L + P++ L   E
Sbjct: 535 ADAALYQAKEAGRNVYRFYTADLTRAAHERLGLEAALRRGLERGEFVLHFQPVVALDKGE 594

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG EAL++W+HP  G I+   F+ +AEE  +I  +  ++LE   R    W D     P+
Sbjct: 595 VVGAEALVRWNHPTEGMIAPLRFIPLAEETGLIVPLGEWVLESACRQGREWLDCGR--PL 652

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++++     +L   ++ ++ +T +  + ++L  +ES VM + +R+   L  L+ +
Sbjct: 653 TIAVNLSTRQFRAGDLTATVRDILDRTGFPAALLELEITESTVMEDADRAVATLAALKGL 712

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ L++DDFGT  S L+YL     D +K + S +      E    I+ +++ MA  +   
Sbjct: 713 GVRLSIDDFGTGYSSLAYLKRFAVDALKIDRSFVRDIADDENDRMIVATVVAMAHQMRLG 772

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +IA+ +     +  L  +GC+  Q   V  P      L  ++ 
Sbjct: 773 VIAEGVETAEQLAFLRSLGCEAYQGYLVGRPQAAADFLGAVER 815



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + V      ++ +    E    A   +    W  D V  ++  + +   + G A G
Sbjct: 124 VGISRDVTVFRETAEALRRSQENLERAQAVARTGSWYVDFVSGQMDWSAETCRLFGQAPG 183

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   +L  +H  D+          V   RG      RV     +  W+  R     
Sbjct: 184 C-VPSYELFLSVVHPEDQALVEAAWRQAVA--RGDYDLTHRVI-VGGEVRWVHERAEFRR 239

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            ++G  L  IG   DIT++K + + +   A 
Sbjct: 240 AADGAALAGIGTVQDITDRKLAEQSLRQAAT 270



 Score = 42.6 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 3/121 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +    D+V+  D     +          G     + G     L  +   D      
Sbjct: 21  LRALIDVIPDLVFFKDEAGRYLGCNRAFEAYTGRREAELIGYTDRDLFDLSTADSYRGYD 80

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             ++ +   R     E  +   D +   +     P  ++       +GI+ D+T  +++ 
Sbjct: 81  --NAVLASGRSSRNEE-WIVYPDGRRVLVDTLKTPFRDAASGRRGVVGISRDVTVFRETA 137

Query: 527 E 527
           E
Sbjct: 138 E 138


>gi|329911378|ref|ZP_08275486.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545945|gb|EGF31041.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 831

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 157/599 (26%), Positives = 276/599 (46%), Gaps = 12/599 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                +  ++  +P     L   +   G  +   V+      +         +     S 
Sbjct: 230 HRYDWQYLSNQGKPFWTEVLSTDIPAAGQRLQYVVVRDISTRKAAEMSLHLAARVFENSQ 289

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474
           + +   D  R  ++    +  I G  +  + G     L    H  D+  F+ IL+S + +
Sbjct: 290 EGIMIADEHRRVISINRALTDITGYTADEVIGNPPQILCSGTH--DKALFQAILESVLKH 347

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                Q E   R  D + + + + +  + +S+  +L YIGI  DI+++K S E +   A 
Sbjct: 348 --DHWQGELWGRHRDGRGYPLWLSVTAVRDSHHAVLNYIGIVTDISDRKASEEQMRHLAE 405

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR   LDRL   + ++      R  V+ +D+D++K IND  G  VGD +L +
Sbjct: 406 HDFLTGLPNRVLLLDRLQQAIAVAERS-RTRLAVLFLDLDRFKNINDSFGHHVGDKLLQT 464

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ + ++  D ++RL G+ F I+L+   +   IA  A  + ++I  P ++   E +V
Sbjct: 465 VAERLKKCVRGIDTVSRLGGDEFVIMLVDTGSGEPIAHVAGKILQAIGTPYSIEGCEFSV 524

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
           T  IG +++ +       ++K+A+ AMYHAK +G N  + F             ++  L 
Sbjct: 525 TTCIGVSTYPADGTDMDVLIKSADTAMYHAKSKGSNRYQFFNNDMNTRVVERIVLEHSLR 584

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+++SE  L Y P I +    ++G EALI+W HP  G +    F+ +AEE  +I  I  
Sbjct: 585 SALKSSEFILEYQPQIHIASNRLIGAEALIRWRHPTLGRMMPDRFITVAEECGLIVPIGD 644

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L +      +W+DQ     + + +N++        L   +   +      P  ++L  
Sbjct: 645 WALRQACLQARAWQDQGLE--LVMAVNLSVAQFHQQNLVRSVTDALQAARLEPQWLQLEI 702

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES++M   + +  +L  LR +GI L +DDFGT  S LSYL  IP D +K + S +    
Sbjct: 703 TESIMMEEAKGAIDMLRSLRDLGIRLAIDDFGTGFSSLSYLKRIPIDKLKIDQSFVRDIT 762

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +  AI+ +II MAK++  T+IA+ +      + L   GCD  Q    +  L     
Sbjct: 763 LDPEDAAIINAIIVMAKSLNLTVIAEGVETLEQFRFLEAHGCDEYQGFLASKVLSVADF 821



 Score = 41.1 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 46/157 (29%), Gaps = 15/157 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-- 441
           F +   +       Q + + G         S D +   +     +   P    + G A  
Sbjct: 133 FCMDIDISVRKREEQALLTVGANFRTLFDNSSDAIMLLE-DNHFLDVNPAALALFGYASK 191

Query: 442 -----SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
                  S           +   D+      L      ++G  +Y+++  +   +  W  
Sbjct: 192 TDMVGRASAEISPPQQPDGLASADKSRQMQDL----VQQKGNHRYDWQYLSNQGKPFWTE 247

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +    +  +   +   +    DI+ +K + E  L  A
Sbjct: 248 VLSTDIPAAGQRLQYVV--VRDISTRKAA-EMSLHLA 281



 Score = 40.3 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 25/152 (16%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                A I G+ +    G   N L   H++    F T+++      +  L  +++VR   
Sbjct: 52  WNATSAGIYGIVARDAIGKPLNQL-LQHVDKEAEFATMVEHIWQTGQPVLPRDWQVRTVT 110

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN-RQSFL 548
               W+   + P+      + +   +  DI+ +K+        A    LT   N R  F 
Sbjct: 111 GHELWVYSTMFPVF-RQNAVHQIFCMDIDISVRKR-----EEQAL---LTVGANFRTLF- 160

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                        DN    +M+++ + +  +N
Sbjct: 161 -------------DNSSDAIMLLEDNHFLDVN 179


>gi|113971961|ref|YP_735754.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113886645|gb|ABI40697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1504

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/555 (26%), Positives = 273/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P  + I G +   +          IH       RD F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY-----LIHLAYSRQQRDLFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             I    + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+
Sbjct: 1013 GIEQQLLRHK--HWAGEIWIRNKARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             +GD +L ++  R+   ++  D +ARL G+ F IIL     +      +  + K+   P 
Sbjct: 1130 HIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +       ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A+  +EL LVY P   L +  + GLEAL++W H + G IS +EF+ +AEE
Sbjct: 1250 HVQLEAGLKQAISRNELSLVYQPKFCLRNGSLTGLEALLRWHHSELGPISPTEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++    + +  W +      I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIINQIGHWVINHACQQLAEWNELGLG-DISMAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LL++R
Sbjct: 1488 KPLSAQDCLALLQQR 1502



 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            I +  ER  LA+  SGD +WDW+I   +V  T     +    S S+           H 
Sbjct: 827 SIRASEERLKLALWASGDGMWDWNIQEQQVYRTHTDIPVPQWNSHSLLHDNA------HP 880

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
            DR+ F+ +L   +  R    + E+R+  +   + W++ R + + +N+    +R  G   
Sbjct: 881 EDRERFKQVLTEHLLGRSPFFEVEYRIEHSPGNWLWILERGKVVETNAQAQPVRMTGTTR 940

Query: 518 DITEQK 523
           +IT +K
Sbjct: 941 NITSRK 946


>gi|117922460|ref|YP_871652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. ANA-3]
 gi|117614792|gb|ABK50246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. ANA-3]
          Length = 1228

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 165/595 (27%), Positives = 285/595 (47%), Gaps = 16/595 (2%)

Query: 370  ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            A+     L+    G  +I  ++      +   +     +     SG+ +   D     V 
Sbjct: 643  AVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGITIMDANDIIVD 702

Query: 430  TTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVR 486
                   I G +   + G    +L      DR      R  L+       G  Q E   R
Sbjct: 703  VNSAFTQITGYSRDEIIGKNCRFLEA-ERTDRSIDAQVRAALEQ-----TGFWQGEVWDR 756

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              +       + +  + +  G I  YIG   DI+E+K + E I   A  D+LT +PNR S
Sbjct: 757  HKEGFDFPKWLMMSIVRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLS 816

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               RL  +   +      +  VM ID+D +K IND LG  VGD +L+ + RR+  ++   
Sbjct: 817  LQSRLEKVFQEAFISQ-TQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIMGND 875

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            DI+ARL G+ F ++L S+ +  ++A  A A+R  +     +  + +  + SIG + + + 
Sbjct: 876  DIVARLGGDEFVVVL-SDTDHDRVAKVAEALRSGLNQTYLIDNKPLHSSPSIGISLFPTD 934

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724
              +   ++KNA++AMY AK  G N+ + F   +++  ++R  I+  L  A+  +EL L Y
Sbjct: 935  GDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIACNELLLYY 994

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             P + +   ++VG+EALI+W HP+ G ++   F+ IAEE+ MI  I  ++LE     +  
Sbjct: 995  QPQVDISSGQVVGVEALIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLENALAQLAE 1054

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            WRD+     + + +N+++  L  + +   +  +++K       ++L  +ESV M  PE++
Sbjct: 1055 WRDK-GAKGLRMAVNLSAHQLRKDTIVADIINVLTKHKLGKGALELEITESVAMQYPEQN 1113

Query: 845  RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +          AI  + 
Sbjct: 1114 AKLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAAT 1173

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            I MA  +  T++A+ +  E  +  L+ MGCD +Q  + + PL  +   + ++  F
Sbjct: 1174 ISMAHELGLTVVAEGVENEAQLVLLSGMGCDLVQGYYFSKPLAADDCFRFIERNF 1228



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 7/153 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLA 441
              + + +  +  F   +    +R       +        +     V        I G  
Sbjct: 534 TMALSKEIARSQTFQATLMESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMEITGYT 593

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500
              +     +      I  + +    L+     RR G  Q  +R    D Q   + +   
Sbjct: 594 LEEL--QAIDPWELTPIRYQSSETEQLERLKQTRRYGPYQKHYR--HKDGQLVAVRLNGS 649

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ +NG+ L  + I  DITEQ++++  +   A
Sbjct: 650 LVTAANGEQL-ILFIVEDITEQERTVARVNLLA 681


>gi|115265648|dbj|BAF32909.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            phaseolicola]
          Length = 1067

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 499  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 557

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 558  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 615

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 616  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 674

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 675  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALNRAIH 734

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 735  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 794

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 795  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 854

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  +  NI+++   D +L
Sbjct: 855  LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKQWHQARVRVP-KVSANISARQFSDGQL 913

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 914  GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 973

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA  +  ++IA+ +     ++ L 
Sbjct: 974  NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHRLNLSVIAEGVETHEQLEFLR 1033

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+  +    
Sbjct: 1034 EHDCDEVQGYLFGRPMPASQFEA 1056



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 350 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 409

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 410 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 467

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 468 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 511



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 217 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 276

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 277 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 336

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   I R IGIA DITEQ       + S +     A
Sbjct: 337 ALAWDAENLITRIIGIAKDITEQVASSQSLRDSEQRYRMLA 377



 Score = 38.0 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 34/188 (18%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+     
Sbjct: 43  LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 102

Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459
                 V T  D   +L                            +    + W P I   
Sbjct: 103 QLEALEVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 162

Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            R        ++ + +     RL+ E  +  A  Q   + + +R +  S  D    I   
Sbjct: 163 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR-LPESRSDFDAVILSI 220

Query: 517 NDITEQKK 524
            DIT +K+
Sbjct: 221 GDITSRKQ 228


>gi|330722368|gb|EGH00221.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           GAF sensor [gamma proteobacterium IMCC2047]
          Length = 715

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 142/578 (24%), Positives = 269/578 (46%), Gaps = 20/578 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                +  +    +     V  S DIV+  D           IA +LG     + G   +
Sbjct: 128 QNQVINDRLARSEKLHRYLVNSSPDIVYMIDNKGCFTFVNDRIAELLGYDKEELIG--MH 185

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRIRPM------- 502
           +   + I D +    +              E R ++ D      +  I+  P+       
Sbjct: 186 YRDLVFIADAEQASYVFSPRAAADTSPRNVELRFKSRDGDRPPRFFEIKTIPIELQADDE 245

Query: 503 --SNSNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + S+G   +   G+A DI+++K++   I   A+ D LT +PNR  F DRL   +  + 
Sbjct: 246 AETESDGATEVGIYGVARDISDRKEAERTINFQAYHDLLTRLPNRALFKDRLNLAVAQAK 305

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              + +  VM +D+D++K +ND LG   GD++L  +++ + + L+  D LAR  G+ F +
Sbjct: 306 RAGH-QMAVMFLDLDRFKLVNDTLGHIYGDELLQLVSQSLQDCLRDGDTLARFGGDEFTL 364

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++   ++       A  + + +  P  +  +EI VT S+G A +     +   ++KNA++
Sbjct: 365 LMPEVDSKDDATVVAKKIIERLRQPFTIEGQEIYVTISVGIAMYPQDGSSMDSLVKNADI 424

Query: 680 AMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMYH K RG N  + +          R+ ++ D+  A+E+ +  L + P I ++   IV 
Sbjct: 425 AMYHIKGRGKNDYQFYCREMNEATMQRLSLERDMRKALESEQFVLHFQPQIDVISGRIVA 484

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W HP  G IS ++F+ +AEE  +I  +  ++L +    + +WR+Q     + + 
Sbjct: 485 FEALVRWQHPSLGMISPTDFISVAEETGLILPLGEWVLRKACSVLSNWREQGIH-DVRMA 543

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++S  +        +  ++ +   S   +++  +E+++M + E S   L +L ++G+ 
Sbjct: 544 INLSSMQIEHKNFIGLVHEVLRENHLSGHDLEMEITENLIMQDMENSIKKLMQLNELGVQ 603

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S LSYL  +P  T+K + S +           I+ ++I MA  +   +IA
Sbjct: 604 IAIDDFGTGYSSLSYLQKLPIHTLKIDRSFVNEIEKDGDDACIVDAVIAMASGLRLNLIA 663

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  E  ++ L   GC  +Q  +   P      + LL
Sbjct: 664 EGVEDEYQVEYLRDKGCCEMQGFYFGKPAPEKESVALL 701


>gi|331269821|ref|YP_004396313.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum BKT015925]
 gi|329126371|gb|AEB76316.1| Diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum BKT015925]
          Length = 963

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/567 (26%), Positives = 279/567 (49%), Gaps = 8/567 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLP 454
            + +    E+  LA+ G+ D +W+WD+ +D    +     I G              +  
Sbjct: 396 QEKLRKSREKYKLAIEGANDAIWEWDVKKDTFFVSEKWTNITGYKLKDSCYIKNRNFFKQ 455

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   D       + + +  +   L  +  ++ + N   W+ ++ + + +  G+ ++  G
Sbjct: 456 IVVKQDYHILMKKIKNILRGKSIYLDVDCEIKDSLNHKKWITVKGKALKDKKGNTIKIAG 515

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DITE+KKS + I   A+ D LTG+PNR +FL      ++     + +   ++ IDID
Sbjct: 516 SITDITERKKSNKKIEFLAYNDILTGLPNRIAFLKTAYKKIEEVKLHNKI-GAMIFIDID 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND LG   G+++L  +++RI ++L   +I  RLSG+ F I+    N    I   A
Sbjct: 575 NFKNVNDTLGHDYGNELLKEVSKRISDVLSDNEIFYRLSGDEFLILQCGCNEVNYINKIA 634

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  +     N+    I  +AS+G + +    ++ S +LKNA++AMY AK  G N    
Sbjct: 635 DMVLGTFNKSFNIGNEYIYTSASMGISLFPKDNVSQSILLKNADIAMYKAKELGKNKYLF 694

Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           + +S          ++E L  A++ +EL LVY P +  ++  I G E L++W  PK+G +
Sbjct: 695 YDISMSEDIIRKTQLEEGLRYAIDRNELKLVYQPQVDAINGNIKGGEVLLRWISPKFGFV 754

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S SEF+ +AE+  +I +I  ++L++       W  + N   + + +N++   L   E  +
Sbjct: 755 SPSEFIPVAEKSGLINSIGKWVLKKACLKNKQWLQKYNN-KVTVSVNVSVIQLQQEEFLQ 813

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ ++++T      ++L  +ESV+M   +     L  ++K+G+ + LDDFGT  S LSY
Sbjct: 814 DLKNILNETKLPSETLELEITESVMMDCDKEILDKLNDIKKLGVKIALDDFGTGYSSLSY 873

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P + VK + + +      +    I+ +II +A  I   +IA+ +  +  ++ L   
Sbjct: 874 LRMLPINKVKLDKAFIDRIHMNKSDRFIVENIIHLAHGIGFNVIAEGVELKEQLQILNEG 933

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
            CD IQ  + + P+      KLLK ++
Sbjct: 934 KCDEIQGYYFSKPVTEEEFDKLLKNKY 960


>gi|297537744|ref|YP_003673513.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257091|gb|ADI28936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 985

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 146/605 (24%), Positives = 282/605 (46%), Gaps = 17/605 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              I +R  + I       G ++ +       IQ   A     Q          +A   +
Sbjct: 394 GNIIIERCHDLIKTTPQELGSLMAIGRSLGVAIQRENAGKRLHQA--------KIAFDSA 445

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            + +   D     V        I G +   + G     L   + +DR  F   + + +  
Sbjct: 446 SEGIMITDDKVRIVAINKGFTEITGYSEEEVLGKSPKILQSGNQDDR--FYKDMWAILK- 502

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  R   E   +    + ++  + I  + ++ G ++ Y+G+  DIT+ K+S   +     
Sbjct: 503 KEERWHGEVFNKRKSGENYYEWLTITAVKDNAGQVVNYVGVFADITDVKRSQNRLHELVN 562

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR+   + L   +  +  D++ +  ++ ID+D++K +ND LG  VGD +L+ 
Sbjct: 563 HDPLTGLPNRRLLNELLEHSIKRAERDNH-KIALLFIDLDRFKAVNDTLGHQVGDKLLLE 621

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            +RRI   ++  D++ARL G+ F +++   +     +  A  +  ++ +  N+   EI +
Sbjct: 622 ASRRISLSMRDSDVVARLGGDEFVVMMDMISKPSDASLVAKKIIHALQIEFNIDGHEIYI 681

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
           +AS+G +++         ++K A++AMY  K++G N+   +         +R  ++  L 
Sbjct: 682 SASVGISTFPKDCADVEGLIKAADIAMYQVKNKGKNNHCFYSDDLSKSAVERFTLEGQLR 741

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   +  + Y P + L+  EI+G EALI+W+HPK G +S + F+ +AEE  +I  I  
Sbjct: 742 HALVRKQFEVYYQPQVSLITGEIIGAEALIRWNHPKLGLVSPATFIPMAEETGLIVQIGE 801

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L   A  I+ W    +    +I +N++   ++ +   + +  ++ +T  +P  ++L  
Sbjct: 802 WVLREAAHQIVRWHKAGHAIQ-WIAVNVSGVQIMRSNFADTVYGILMETDCNPHMLELEI 860

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES VM N E       R++++G+ L +DDFGT  S LS L  +P D +K + S +    
Sbjct: 861 TESTVMQNTEYVIDTFNRIKQLGLKLAIDDFGTGYSSLSNLKRLPLDKIKIDQSFVRDLP 920

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 AI  +I  MA ++  ++IA+ +  +     L+ MGC   Q    + P+      
Sbjct: 921 DDLDDAAIANAIYAMAGSLGFSVIAEGVETQAQADFLSAMGCKEGQGYLYSKPVTATEFS 980

Query: 951 KLLKE 955
           KLL +
Sbjct: 981 KLLTK 985



 Score = 42.2 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 6/157 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  V         +    +     +  S D++   D     +        +  L      
Sbjct: 107 MHDVTDRVSTELQLRHTEKLLRNLIDASPDLICFKDEKNRWLEANASSIELFQLDQLDYQ 166

Query: 447 GPIRNWLPYIH-INDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                 L  +     ++ FR      D      R     E  +         + +   P+
Sbjct: 167 HKTDMELATLSSPAFKEAFRHSKVSDDQAWKLGRSIRNEEV-ISLPHGGAKVLDVIKVPL 225

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538
            N +G     + +  DITE+K +   +    A  D L
Sbjct: 226 FNDDGSRHGLVTLGRDITERKMAESHLRDRSAILDAL 262


>gi|298504666|gb|ADI83389.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 739

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 151/631 (23%), Positives = 289/631 (45%), Gaps = 17/631 (2%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV--------GGLVLIVILIGFTVIQHV 390
           L     + + +   G           +++ P  V          L   ++ I        
Sbjct: 100 LFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRRPLGDSELAETMLRIFAARASAE 159

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      Q          + +      ++  D  R  +     + + +G     + G   
Sbjct: 160 LERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGKT- 218

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +  I    R      +D  +    G   Y+  +   D     +I       N++G I 
Sbjct: 219 --VFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIG 276

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +G   DITE+K++ E I   A+ D LTG+PNR    DR++ +L  +  +      V+ 
Sbjct: 277 GIVGTILDITERKRAEEAIQQLAYFDALTGLPNRTLLRDRVSQLLSQARREGGG-FGVLH 335

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D++K +ND LG A GD +L ++  RI   ++  D +ARL  + F +IL    +   +
Sbjct: 336 LDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARLGSDEFVVILPGVGHEEDV 395

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + + +  PI +   +I  TASIG A + +   ++  +LKNA++AM+ AK  GG+
Sbjct: 396 VAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGD 455

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             + +    +    +R+ ++  L  A+E  E  L Y P++ +    IVG+EAL++WD P+
Sbjct: 456 GYQFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPE 515

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S + F+ +AEE  +I  I  ++L      + +  +      + + +N++++    +
Sbjct: 516 LGMVSPARFIPLAEETGLIVPIGEWVLRSACEQLRALHE-LGYTELCVSVNVSARQFRHD 574

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             C  + A+++     P  ++L  +ESV+M   E ++ +L +L+++G+SL +DDFGT  S
Sbjct: 575 GFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKLKQMGVSLAIDDFGTGYS 634

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL + P D +K + + +      +   AI  +I+ +A  +   ++A+ +     +  
Sbjct: 635 SLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAF 694

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           L  + CD +Q  H+A PL   ++L+ L+ R 
Sbjct: 695 LAALRCDVVQGYHIARPLPPRNLLEFLEARQ 725


>gi|170723673|ref|YP_001751361.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida W619]
 gi|169761676|gb|ACA74992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida W619]
          Length = 1276

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 150/565 (26%), Positives = 270/565 (47%), Gaps = 17/565 (3%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G +   +   + + L   
Sbjct: 708  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYSVSDVLDQLPSMLTV- 766

Query: 457  HINDRD--NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
              +D+   + R +L     + RG  + E  ++    + +   + I  + +  GD+  Y+ 
Sbjct: 767  --DDQQEGHLRYVLKQL--HLRGSWEGEVWLKRRSGEHYPAWVGITAVLDDEGDLASYVC 822

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               DI+E+K S + I   A+ D LT +PNR  F DRL T L  +    +    +M +D+D
Sbjct: 823  FFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERQKSW-VVLMFLDLD 881

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KI 630
            ++K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S         + 
Sbjct: 882  RFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQSRATREMALNRA 941

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N
Sbjct: 942  IHVAENILASLVRPFVLEGREFFVTASIGIALSPQDGGELSQLMKNADTAMYHAKERGKN 1001

Query: 691  HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            + + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP 
Sbjct: 1002 NFQFYQAEMNASALERLELESDLRHALEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPT 1061

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G +   +F+ + EEL ++  +  ++L   +R + +W       P  + +NI+++   D 
Sbjct: 1062 RGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDG 1120

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +L + +  ++ +T   P+ ++L  +ES++M +   +  +L  L+ +G+S+ +DDFGT  S
Sbjct: 1121 QLGKRIATVLEETGLPPACLELELTESILMRDVNEAMQILDSLKVLGLSIAVDDFGTGYS 1180

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L+YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ 
Sbjct: 1181 SLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEF 1240

Query: 927  LTRMGCDYIQDSHVASPLGFNSILK 951
            L   GCD +Q      P+  +    
Sbjct: 1241 LREHGCDEVQGYLFGRPMPASQFEA 1265



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  R+  +   +   LG   
Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGETLGYDR 485

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  +++ +         G  L  + R R  D  +    IR +
Sbjct: 486 TELAQMGERFWELLLHPEDAAHYQALRQQQRANGHGQSLHCQLRFRHRDGGWRCYDIREQ 545

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  +S+G + R IG+  D+T Q       + S +     A
Sbjct: 546 VLTRDSDGQVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 23/158 (14%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL------------- 440
              SQ +    +R  +      D+++  D        +P +  +LG              
Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDSKLQLNYVSPSVQAVLGYNTDWIFENGWQSI 628

Query: 441 --ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
                 + G   + +  +     DR+     L   +  +            AD +   + 
Sbjct: 629 VANPSQLTGIY-SLMERVSKAMGDREQL-AQLRQHLPNQLFLFDC----LRADGRKIPIE 682

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +R+  + +        +G+  DI++Q+++ + +   A 
Sbjct: 683 LRLVLVWDDRERFEGVLGVGRDISQQRRAEKDLRMAAT 720


>gi|26987408|ref|NP_742833.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24982066|gb|AAN66297.1|AE016258_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 1276

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   +   L  +
Sbjct: 708  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R ++     ++RG  + E  ++  D   +   + I  + +  GD+  Y+   
Sbjct: 767  DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL   L  +         +M +D+D++
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           +   
Sbjct: 884  KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 944  VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP  G
Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  ++L   +R + +W       P  + +NI+++   D +L
Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ ++   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ L 
Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ +    +R  +      D+++  D        +P + ++LG  +  +      W 
Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626

Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQ------------YEFRVRAADNQFHWMIIRIR 500
             + +        ++++          Q            + F    AD +   + +R+ 
Sbjct: 627 SIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLV 686

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + + +      +G+  DI++Q+++ + +   A 
Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D+   R+  +   +   LG   
Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  +++ +            L  + R R  D  +    IR +
Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLHCQLRFRHRDGSWRCYDIREQ 545

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  N+ G + R IG+  D+T Q       + S +     A
Sbjct: 546 VLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586


>gi|148545949|ref|YP_001266051.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida F1]
 gi|148510007|gb|ABQ76867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida F1]
          Length = 1276

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   +   L  +
Sbjct: 708  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R ++     ++RG  + E  ++  D   +   + I  + +  GD+  Y+   
Sbjct: 767  DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL   L  +         +M +D+D++
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           +   
Sbjct: 884  KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 944  VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP  G
Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  ++L   +R + +W       P  + +NI+++   D +L
Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ ++   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ L 
Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ +    +R  +      D+++  D        +P + ++LG  +  +      W 
Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626

Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQ------------YEFRVRAADNQFHWMIIRIR 500
             + +        ++++          Q            + F    AD +   + +R+ 
Sbjct: 627 SIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLV 686

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + + +      +G+  DI++Q+++ + +   A 
Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D+   R+  +   +   LG   
Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  +++ +            L  + R R  D  +    IR +
Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRQQQRDSGHDQPLHCQLRFRHRDGSWRCYDIREQ 545

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  N+ G + R IG+  D+T Q       + S +     A
Sbjct: 546 VLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586


>gi|167588509|ref|ZP_02380897.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Burkholderia ubonensis Bu]
          Length = 859

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 146/550 (26%), Positives = 258/550 (46%), Gaps = 8/550 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A   +    W +   R     +P++  ILGL            L  +  +++        
Sbjct: 145 AQALAHVGNWAYQAGRPDGYWSPELYRILGLEPERTPATFDRLLQAVPADEQPLLFQSF- 203

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + +         E R+  AD     ++ +     + N  I+   GI  DITE+K     I
Sbjct: 204 TSLRTEGAAFSLEHRLIHADGTERHVLHQAESGRDLNHAII-LRGIVQDITERKAQQGRI 262

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR    DR+   +  +     L   VMV+D+D++K +ND  G +VGD
Sbjct: 263 EYLANHDALTGLPNRNLLSDRMEQAMSQARRTGQL-VAVMVLDLDRFKHVNDTFGHSVGD 321

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L ++  R+   ++  D +ARL G+ F ++L++ +           +  +   P     
Sbjct: 322 GLLRAVAARLKAAVRDGDTVARLGGDEFVVMLVNLSTPADADAIGRKILGTFVAPFAFDG 381

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707
            ++ VT S+G +        +  +L+ A+ A+Y AK RG N    +     +   +R  +
Sbjct: 382 HDLHVTTSVGVSLCPIDGADAETLLRTADAALYCAKERGRNCYSFYTRELGARVEERAEL 441

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  AVEN EL L Y P + L   +I G+EALI+W  P  G I    F+ IAEE  +I
Sbjct: 442 ENALHQAVENGELELYYQPKVDLKTGQISGVEALIRWRRPGVGVIPPDRFIPIAEETGLI 501

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L       ++W+      PI + +N++++     ++   ++A + +T  +P+ 
Sbjct: 502 VPIGEWVLRTACAQAVAWQQA-GHAPIPVAVNLSARQFRQQDVARMVRATLDETGLAPAW 560

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV+M +       L  L+ +G+ L+LDDFGT  S LSYL  +P D VK + S 
Sbjct: 561 LELELTESVLMQDRRAIAHALRELKALGVVLSLDDFGTGYSSLSYLKDLPIDVVKIDKSF 620

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++   ++ +  ++ RSII MA+++    +A+ +  E  +  L R  C  +Q  + + P+ 
Sbjct: 621 LSDVTTSAEGASLTRSIIAMAESLNMETVAEGVETEAQLSFLNRHRCHAMQGYYFSHPVT 680

Query: 946 FNSILKLLKE 955
              I  +L  
Sbjct: 681 GAEIAGMLSA 690


>gi|313497034|gb|ADR58400.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas putida BIRD-1]
          Length = 1276

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   +   L  +
Sbjct: 708  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R ++     ++RG  + E  ++  D   +   + I  + +  GD+  Y+   
Sbjct: 767  DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL   L  +         +M +D+D++
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           +   
Sbjct: 884  KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 944  VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP  G
Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  ++L   +R + +W       P  + +NI+++   D +L
Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ ++   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ L 
Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ +    +R  +      D+++  D        +P + ++LG  +  +      W 
Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626

Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQ------------YEFRVRAADNQFHWMIIRIR 500
             + +        ++++          Q            + F    AD +   + +R+ 
Sbjct: 627 SIVANPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLV 686

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + + +      +G+  DI++Q+++ + +   A 
Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D+   R+  +   +   LG   
Sbjct: 426 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVPSQRMIFSNRHLGQTLGYDR 485

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  +++ +            L  + R R  D  +    IR +
Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRQQQRDSGHDQPLHCQLRFRHRDGSWRCYDIREQ 545

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  N+ G + R IG+  D+T Q       + S +     A
Sbjct: 546 VLSRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586


>gi|94499837|ref|ZP_01306373.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
 gi|94428038|gb|EAT13012.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
          Length = 800

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 140/562 (24%), Positives = 260/562 (46%), Gaps = 10/562 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + S  E+       S   ++  ++  D        + I G+     +  + +WL +I   
Sbjct: 236 LTSSEEKFRQLASLSPVGIFQINLKHDITYVNNRWSDITGIR--QPNATLEHWLSHIRQE 293

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR        + +   +     E       +Q  W II    + +  G+I  Y+G  +DI
Sbjct: 294 DRRAAVRAWRNLIENHQE-FVVEVGFERNRDQITWAIIEASVLYDGQGEIYGYMGAISDI 352

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+ K +   +   AF D LTG+ NR+ F DRL   +  S    +    ++ +D+D++K+I
Sbjct: 353 TDLKVAQLQMENLAFFDPLTGLSNRRLFKDRLHKSISESKRRGSF-VALLFLDLDQFKRI 411

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L    RR+   ++  D ++R+ G+ F ++L    N+  +   A  + K
Sbjct: 412 NDSLGHDAGDVLLEETARRLENSVRESDTVSRIGGDEFTVLLNDVENTHGVRHIAEKILK 471

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
            +  PI +  +EI  T SIG     +     + +++NA++AMY AK  G N+ + F   +
Sbjct: 472 KVCRPIMVKNQEIINTVSIGITLAPTDGDDVNTLMRNADMAMYQAKAMGRNNYQFFSEEM 531

Query: 698 SSFRSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +      + I++DL  +++  E   + Y P I L     VG EALI+W       I    
Sbjct: 532 NKEMMGYLEIEKDLRHSIDYPEDFIIYYQPKIELHSGRFVGAEALIRWKPEGKDMIPPDR 591

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815
           F+ IAEE  +I  I   ++ +    +    +    P    + IN++++   D +L   +Q
Sbjct: 592 FIPIAEESGLIVPIGAHVIRQACLQVKYMINTGIWPEDGKVAINLSARQFSDPDLICKLQ 651

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T      ++   +ES +M N E +   + +++++GIS+ +DDFGT  S L+YL  
Sbjct: 652 EILEQTKCPVHVLEFEITESTLMDNVENAIFTMRQIKEMGISIAIDDFGTGYSSLAYLKR 711

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S +         + I  ++I MA  +   ++A+ I  +  I  L    C+
Sbjct: 712 FPIDVLKVDRSFVMDIPNDLNDMEITAAVIAMAHKLHLQVVAEGIETQEQIDFLKSNYCE 771

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y Q   +A P+  + + + ++ 
Sbjct: 772 YGQGFMIARPMPSDELERFIQR 793


>gi|187922673|ref|YP_001894315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia phytofirmans PsJN]
 gi|187713867|gb|ACD15091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia phytofirmans PsJN]
          Length = 1036

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/556 (26%), Positives = 270/556 (48%), Gaps = 14/556 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G  +  + G     L     +DR+ 
Sbjct: 477  QSRALDASVNAILITAPSPTGNLIEYVNPAFMRITGYDATEVIGHDCRVLQR---DDREQ 533

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ N +G I  +IG+ ND+T+ 
Sbjct: 534  EGVALIRQALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNQDGVITHHIGVINDVTDL 592

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ +D+D +K +ND 
Sbjct: 593  MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFMDLDGFKNVNDS 651

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SI+
Sbjct: 652  LGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRASIS 711

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++     S
Sbjct: 712  EPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771

Query: 703  D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ ++E  L Y P + +   +IVG EAL++W  P+ G +  S F+ +
Sbjct: 772  AGARLNLERRLRRALRDNEFLLHYQPQVDIESGQIVGTEALVRWRDPEVGLVPPSSFIPV 831

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+D+   PP  + +N++++     ++ + +  ++++
Sbjct: 832  AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLAE 890

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 891  TGLEPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 950

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 951  LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010

Query: 939  HVASPLGFNSILKLLK 954
            + A PL  ++I +LL+
Sbjct: 1011 YFAKPLSTDAISELLQ 1026



 Score = 47.6 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 54/167 (32%), Gaps = 16/167 (9%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L  +     F +   V              +     +      ++  D+    +      
Sbjct: 322 LNFMGRAAFFVLADDVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWKDMESRYLGCNMAF 381

Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           A   GLA    + G      P R++   ++ +D++               ++ +E  +  
Sbjct: 382 ARDAGLAYPEQVVGKSDADMPWRDFSTLLNDHDKEVV--------STGVPKMNFEVDLV- 432

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            D      +    P ++ +G ++  +G   DITE+K++   +   + 
Sbjct: 433 IDGVHRTTVTSKLPFTDGDGRVIGVLGSYTDITERKRADLALRLQSR 479


>gi|330895491|gb|EGH27803.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 1002

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 262/563 (46%), Gaps = 13/563 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 434 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 492

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                   R IL       +G  + E R+R  + + +   + I  + +  GD+  Y+   
Sbjct: 493 ESEQETRLRHILRQL--NGQGTWEGEIRLRRRNGEHYPAWVGITAVLDDEGDLASYVCFF 550

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DI+E++ S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 551 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 609

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
           K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 610 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 669

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 670 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 729

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 730 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 789

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 790 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 848

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 849 GKRIALILEQTGLSPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSL 908

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 909 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 968

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
              CD +Q      P+       
Sbjct: 969 EHDCDEVQGYLFGRPMPPAQFEA 991



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 285 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 344

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490
            +      W   I +      F  ++D             RL+ E  +R        AD 
Sbjct: 345 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 402

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 403 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 446



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 152 ILSIGDITSRKQVELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 211

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H  D  N++ + L          LQ   R R  ++ +    IR +
Sbjct: 212 SELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQRVLRFRDRESNWRSFDIREQ 271

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 272 ALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 312


>gi|303240874|ref|ZP_07327386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
 gi|302591602|gb|EFL61338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
          Length = 852

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 270/568 (47%), Gaps = 10/568 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWL 453
              + +    E   + +   G+ +   D     + T  +   +  L+        +   L
Sbjct: 287 RAYRELRKHHEWLEVTISSIGEAIIATDEKGVIMFTNLEAQKMFSLSEDEFMKKCLNEVL 346

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDILR 511
             +   +       ++  +  R  +L  E    + + D   H +   I P+ N  G+I+ 
Sbjct: 347 GGLMDENGAPCSFSVEEVI-NRGVKLNLESISVLASTDGNEHLVTGAILPIRNELGEIIG 405

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +    DITE K+S + I    + D+LTG+PN+  F DRL   L  +     L+  ++++
Sbjct: 406 TVSAIKDITEIKRSEKRIYDMEYYDSLTGLPNKALFSDRLNMALANARRS-GLKCAIIIL 464

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND LG A GD++L  +  +I   ++  D +AR +G+ F I+  +      I 
Sbjct: 465 DLDNFKTINDTLGHACGDEILKQMGEKIKGYIREVDTVARFAGDEFIILQPNVRLLTDIT 524

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + +    P  L  RE  VTASIG A + +       +++NA++AMY AK  G N 
Sbjct: 525 RAVERIIEKFQKPWILEGREYYVTASIGIAVYPNDGEDEQTLIRNADIAMYKAKETGKNS 584

Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            E F  S  ++    + ++  L  A+E  E  L Y P I +    I+G+EALI+W+    
Sbjct: 585 YEMFMESMNKNIIDKLDMENSLRHALEKEEFVLFYQPQIDIKTGNIIGVEALIRWNREGI 644

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ + EE  +I  +  ++L       + W  +   P + I +N+++K      
Sbjct: 645 GLVPPMEFIPMIEESGLIIPLGEWVLRAACMQNVEWIRKGIKPVL-IAVNLSAKQFQQQN 703

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + ++ ++++T   P  ++L  +ES+ M + + +  +L  LR+ GI ++LDDFGT  S 
Sbjct: 704 LVKIIENVLNETGLDPKLLELEITESIAMQDIDFTIAVLKELREKGIRISLDDFGTGYSS 763

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P DT+K + S +          AI +S+I +A  +  +++A+ +  +  ++ L
Sbjct: 764 LNYLKMLPIDTLKIDKSFVRDITSNSNEEAIAKSVISLAHKMHLSVVAEGVETKEQLEFL 823

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               CD +Q   ++ PL  N    LL++
Sbjct: 824 KEHMCDKVQGFLLSKPLQANEAEILLRK 851


>gi|95928735|ref|ZP_01311481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
 gi|95135080|gb|EAT16733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
          Length = 1288

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 141/586 (24%), Positives = 265/586 (45%), Gaps = 16/586 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGL 440
               +   L      Q      ++  LA      S + +   D     V+     + I G 
Sbjct: 709  VQDVAFALDVHEHEQQQAFSMKQLQLAATVFDNSREGIVLTDKNEKIVSVNRAFSDITGY 768

Query: 441  ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G   R      H   RD ++ +      +  G  Q E   R  D Q +  ++ +
Sbjct: 769  RDDEVLGQTPRILKSNRH--GRDFYQNMWHCLAEH--GCWQGEIWNRRKDGQVYPELMSM 824

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + +   ++  YI +  DI++ K+S E +   ++ D LT +PNR  F   L   +  + 
Sbjct: 825  SAVCDDQQEVSHYIAVFTDISQAKESQEKLDYLSWHDPLTDLPNRSLFCTHLDQAVKHAE 884

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               +    V+  D+D +K +ND  G  VGD +L  +  R+   L+  D+LARL G+ F +
Sbjct: 885  RKHH-SFAVLCFDLDHFKDVNDSFGHLVGDALLRKIADRLRSCLRESDMLARLGGDEFVL 943

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNA 677
            +L    +S ++   A  +   +  PI L   + E+ V+ S+G A +      + E+L+ A
Sbjct: 944  LLEDVADSHRVTMMAEEILHQLQQPICLTETDLEVQVSVSVGIAVYPEHGRDALELLQRA 1003

Query: 678  ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            + A+Y AK  G      +         +RV +   L  A+E  E  + Y P + L   +I
Sbjct: 1004 DSALYRAKQHGRARFAYYNEEMTEQAQERVQLSFHLRQALEKKEFAVYYQPQVDLGTGQI 1063

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            VG EAL++W+ P+ G ++   F+ +AEE+  I ++  ++L ++     +W D    PP+ 
Sbjct: 1064 VGAEALMRWNSPELGLVTPDRFIPLAEEIGCICSMGTWILRQVCEQGKAWLDA-GYPPLT 1122

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            + +N+++    + ++   ++  + +T Y    ++L  +ES +M   +++  LL  L ++G
Sbjct: 1123 LAVNLSAVQFAEEDIACRLKETLQETGYPAEYLELEVTESTLMHKEQQTIDLLKSLNELG 1182

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
            + L LDDFGT  S L+YL Y P   +K + S +           ++ +I+ M   +   +
Sbjct: 1183 VRLALDDFGTGYSSLAYLKYFPLHLLKVDKSFIDDLPADANDCKMVTAIVQMGHGLGFDL 1242

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +A+ +        L ++GCDY Q  + + P+       L + + PL
Sbjct: 1243 LAEGVETVAQRDCLAQLGCDYYQGYYCSPPVPACEFAALRQSQKPL 1288



 Score = 42.6 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 10/149 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT-PDIATILGLASGSM-HGPIRNWL 453
            S+                 D++W  DI    + T   +  T+L + S  +  G    + 
Sbjct: 416 ASERHQETARLLQHICDNVPDLIWAKDIEHHYIFTNKSNCRTLLCVDSTDIAIGKNHEFF 475

Query: 454 P--YIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVR---AADNQFHWMIIRIRPMSNS 505
               +     D      + L         R +   R +           + +   P   +
Sbjct: 476 SDKILKEFPEDPLAYQFSELCCQSDSEVLRTRQSMRFQEVGHVKGTLICLDVYKAPFYGA 535

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAF 534
           +G+++  +G A  IT +K+  +  +  + 
Sbjct: 536 DGELIGTVGSARIITREKQLEQETMRLSR 564


>gi|146295101|ref|YP_001178872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145408677|gb|ABP65681.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
            [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 1015

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/569 (26%), Positives = 279/569 (49%), Gaps = 11/569 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            ++ +  + ER    V    D +W++D+   R+    ++         +       WL   
Sbjct: 445  TELLKEEEERYKFIVENISDCIWEFDVAEKRIEFYGNLKDYFETDKINPKIDYYAWLELY 504

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +D       +      R  +++YE R++  +  + W+ + I+   ++ G   + IGI 
Sbjct: 505  HPDDIKAVMEKIQRAFELRDEKIEYEARIKDKNGNYKWVSVHIKVFYDNRGKPEKLIGIN 564

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D + +K+  + I   A+ D+LT +PNR+ F ++L+ ++  +A    +   V++IDID +
Sbjct: 565  IDYSAKKEYEDRIKYLAYYDDLTNLPNRKLFENKLSELIKKAAQTGKI-GAVILIDIDNF 623

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633
            K IND+ G  VGD+ L +++++I E LK     +  +R+ G+ F IIL        + + 
Sbjct: 624  KDINDLYGHEVGDECLRTISQKIAEYLKGLEVQNYFSRVGGDEFAIILNGLEKKDFVIEV 683

Query: 634  AIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               ++K     I L + E  +  T S+G + +      + E+L+N ++A+  AK  G N 
Sbjct: 684  CTEIQKIFENEIFLEKIERGLYTTISMGISFYPDDGRDTKEILRNVDMALSLAKENGKND 743

Query: 692  VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + F         +++ I+++L  A+EN E  L Y P++ L + EI  +EALI+W  P  
Sbjct: 744  FQIFMPFLLLKNLNKIEIEKNLRKAIENDEFVLYYQPVVNLENMEIHSVEALIRWFLPHK 803

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +S  EF+ +AEE  +I  I   ++E+  +D+  W  +     I I IN++++      
Sbjct: 804  GMVSPLEFIPVAEESGLIVRIGEMVIEKALKDLKDWERKGIN-DIHIAINLSARQFKTKY 862

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                +  L+ K    P ++    +E+  + N + S  +LG L ++GI   +DDFGT  S 
Sbjct: 863  FENTVAKLLEKYSVDPVKVSFEITETGAVENFDVSLKILGFLCQMGIKFLIDDFGTGYSS 922

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L YL  +P   VK + S ++    +++  AI+  II MA  +   ++A+ I     ++ L
Sbjct: 923  LIYLRKLPISGVKIDKSFISELMFSKESRAIVEGIILMAHKLGLKVVAEGIENNKQLEIL 982

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +GCD+ Q    + P+    + K L ++
Sbjct: 983  KEIGCDFGQGYLFSKPVPKEEVEKFLLQK 1011



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 2/145 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T+           QG  +  +   L    +  IV   ++  + +        + G   
Sbjct: 276 SITIFVMRGINKKLQQGKEAYEKYAELLASNANVIVLTLNLKGEIIFFNRFAEEVTGYKK 335

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G    W+       R      L S +  ++    YE  +   +    W+I     +
Sbjct: 336 EEVVGK--RWVDLFVPEFRREDAEKLFSEIAEKKVLNNYESEIITKNGDTCWIIWNNVVV 393

Query: 503 SNSNGDILRYIGIANDITEQKKSLE 527
            NS  +    I    DIT  KK+  
Sbjct: 394 ENSYLNEPLIISTGLDITPIKKNQR 418


>gi|217975096|ref|YP_002359847.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217500231|gb|ACK48424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1508

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/555 (25%), Positives = 274/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P    I G     +         +IH       R+ F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFCAITGYTERQITDRH-----FIHLAFGRQQRELFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            TI    + ++      E  +R    Q   + + I  + +  G+   ++ +  DIT++KK+
Sbjct: 1013 TIEQQLLRHK--HWVGELWIRNKQRQAILVWLEINQVIDIKGETSHFVAVFTDITQRKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD +L ++ RR+   ++  D +ARL G+ F IIL     +      +  + ++   P 
Sbjct: 1130 HVGDLLLKAVARRLQNAVRDGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKTLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSSGRNNFQFYTSKLNEIATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A++ +EL LVY P   L +  + G+EAL++W H + G IS  EF+ +AEE
Sbjct: 1250 HVQLESGLKEAIQRNELSLVYQPKFCLKNGSLTGIEALLRWHHTELGPISPVEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++ +  + +  W        I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIITQIGHWVINQACQQLAEWNSLGFN-GITVAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAQSLELELTESMIMGNPQESVSILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A +++  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLDLNVVAEGVETQEQLNFLAMQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LLK +
Sbjct: 1488 KPLSGADFLTLLKNQ 1502



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                 F   I +  ER  LA+  SGD +WDW+I  ++V  T   ++I    S ++    
Sbjct: 818 RQQQREFETSIRASEERLKLALWASGDGMWDWNIAENQVYRTNMDSSIPHWNSSNIAH-- 875

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508
                 +H  DR+ F+  L+  +  R    + E+RV  +   + W++ R + +  +S  +
Sbjct: 876 ----ESMHSEDRERFKLELNEHLQGRSPFFEAEYRVERSPGNWVWILDRGKVVEKDSLDN 931

Query: 509 ILRYIGIANDITEQK 523
            +R  G   +IT +K
Sbjct: 932 PIRMTGTNRNITSRK 946


>gi|253997490|ref|YP_003049554.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylotenera mobilis JLW8]
 gi|253984169|gb|ACT49027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylotenera mobilis JLW8]
          Length = 1250

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 148/595 (24%), Positives = 261/595 (43%), Gaps = 21/595 (3%)

Query: 373  GGLVLIVILIGFTVIQHVLATGYFSQGI----FSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            G   ++      T ++        S+ +      + + Q  A+     IV   D+     
Sbjct: 663  GTAAILGWFYDVTDLRRAQDALLLSEALAKQSLEELKYQKYALDK-HAIVAVTDVKGRIT 721

Query: 429  TTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                  + I G +   + G     L    H   +  F+ +  +    +      E   RA
Sbjct: 722  YANDKFSEISGYSIEELLGQDHAILNSGYHP--KGYFKEMYRTVANGQ--VWHDEICNRA 777

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             D   +W+   I P    +G    YI I  DIT++K + +     A  D LT +PNR+  
Sbjct: 778  KDGSLYWVDTTIAPFIGDDGKPQSYISIRTDITQRKAAEDKSNYLALYDPLTNLPNRRLL 837

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            LDRLT  L  +         ++ +D+D +K +ND LG  VGD +L  +   +   ++  D
Sbjct: 838  LDRLTHALASAMRTGRG-GALLFLDLDHFKTLNDTLGHDVGDLLLQQVAECLTACVREGD 896

Query: 608  ILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
             +ARL G+ F +IL   +        +       +      P      E  +T+S+G   
Sbjct: 897  TVARLGGDEFVVILEGLSEQEVEAAAQAEVVGEKILNKFIEPYQFKGYEYHITSSVGITL 956

Query: 663  WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
            +  + + S E+LK A++AMY AK  G N +  F        +    ++ +L  A++ +E 
Sbjct: 957  FGKNNLKSDELLKQADIAMYQAKKLGRNALSFFDPKMQEGIQARVDMEHELRKALDKNEF 1016

Query: 721  YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
             L Y   + L D  + G EALI+W HP+ G I  +EF+ IAE+  MI +I  ++++    
Sbjct: 1017 QLFYQMQVGLSDRAV-GAEALIRWIHPERGLIPPNEFVSIAEDCGMILSIGAWVIDTACA 1075

Query: 781  DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
             +  W        + + +N+++K     +  E +   I++   +P  +KL  +ES ++ +
Sbjct: 1076 QLKRWEQSERTRSLTLSVNVSAKQFRQADFVEQVTTAIARHGINPMLLKLELTESALLDH 1135

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898
             E +  ++  L+ IGI  +LDDFGT  S L YL  +P   +K + S +          AI
Sbjct: 1136 IEDAVAIMNALKDIGIRFSLDDFGTGYSSLQYLRLLPLYQLKIDRSFVRDIASSIGNQAI 1195

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +R+II MA  +   +IA+ +  ++    L   GC + Q    + P+  ++   LL
Sbjct: 1196 VRTIIAMAHTLNLNVIAEGVETQVQQGILLDSGCMHYQGYLFSEPVPIDAFEALL 1250



 Score = 90.8 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 4/236 (1%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           A         + +   ++ I++  + Y RA+          ++     +          +
Sbjct: 214 AKWVATIFRILFILVAFWSIFYLWRAY-RALHSTLGASADEVYQHIFRVGAGDFSIPITV 272

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           +PA    ++  +  +   +  H +   +  Q +         A   +    W  D +   
Sbjct: 273 KPAQDNSVLAELAKMQSLLHAHDVERTHAEQSLHRSKALLVEAQHIAQVGSWSLDWLTGE 332

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  + +I  I        H     +L  +H  DR+       + V       +   R+  
Sbjct: 333 LIWSEEIYHIFETDQHQFHANYEAFLNAVHPCDREAVDCAFKASV-VSHTPYEITHRLLL 391

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           AD    W+  R     ++ G+     G   D+TE++ S   I        LT I N
Sbjct: 392 ADGSVKWVHERGTSDYDAAGNPTYSRGTVQDVTERQNSEALIRKTESY--LTNILN 445



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASG 443
             +Q V         I       +  +    +++W       RV      I  + GL+  
Sbjct: 418 GTVQDVTERQNSEALIRKTESYLTNILNSVEEVIWTASAPDFRVNHVNAAIEKLCGLSQQ 477

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++   I  W+  IH +D    +  + +        +  E+R+  AD    W+      + 
Sbjct: 478 ALIDDIEVWINLIHPDDCAQAKLAMKAVFEQ--SSVALEYRIVLADGTVRWVSDSRHVVY 535

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
             +G+    + + +D+T ++ + +   
Sbjct: 536 GESGESAELVCVIHDVTAKRLAADADR 562


>gi|189425827|ref|YP_001953004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422086|gb|ACD96484.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 860

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 150/613 (24%), Positives = 263/613 (42%), Gaps = 14/613 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           W                    + GG +L+ I       +    T   +  +    ER+ L
Sbjct: 249 WLGIEGAGYLMPRWIWWTLGGVAGGALLLGIFALLLRREVRRKTADLNHEV---EERRKL 305

Query: 410 --AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S + V   D         P    + G  S  + G   + L   H    + +  +
Sbjct: 306 FAAVEQSANSVVITDTEGVIEYVNPHFCMVTGYRSEEVIGQKPSLLKSGH-QSAELYADL 364

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +    R    + EFR +  +   +W +  I P+ N  G+I  ++ I  DIT +K   E
Sbjct: 365 WKTISAGR--EWRGEFRNKRKNGSLYWDLCSIAPIRNEAGEITNFVAIKEDITSRKAQEE 422

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR    + LT  +           ++++IDID  K +ND  G   
Sbjct: 423 ILTWQAGHDTLTGLYNRYFLENHLTAEIKRMDRQHQT-LSLLLIDIDNLKFVNDTFGHDF 481

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LV +  R+ +      I+ R  GN F ++                +++ ++    +
Sbjct: 482 GDRLLVQIAERLKQAACPLSIVGRFLGNEFALVPPLAEGREHAVTLVNRIKQQMSELFVM 541

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705
              E+ +T SIG   +      +  +L+NAE AMY AK +G N +  +          R+
Sbjct: 542 DGAEVVITVSIGVVVFPDDGEDADTLLRNAEAAMYEAKRQGRNTIVWYTTDFHKRAQYRL 601

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           M+   L  A ENS+  L Y P I   D  ++G+EAL++W       +S  EF+ I EE  
Sbjct: 602 MLAARLHRAFENSDFTLQYQPQISTQDNTVIGVEALLRWTPADLPPVSPMEFIPILEETG 661

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L +      +W+     P + + +NI++      +L E ++ ++++T   P
Sbjct: 662 LIVPVGTWVLYQACHQAAAWQRAGL-PRMRLSVNISAVQFQRGDLGETVRMVLAETGLDP 720

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + + L  +ES++M +  +S+  L  LR +G+ L LDDFGT  S L+YL  +P   +K + 
Sbjct: 721 ALLCLELTESMLMIDTAQSQQKLQELRDLGVRLALDDFGTGYSSLAYLSRLPVQELKVDQ 780

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          A++ ++I MA+ +  T+IA+ +  E     L   GC  IQ      P
Sbjct: 781 SFVRRLHDTPSDTAVVNTVIAMAQELGLTLIAEGVESEEQKSHLIGRGCTIIQGFLFCRP 840

Query: 944 LGFNSILKLLKER 956
           L  + +   + + 
Sbjct: 841 LPPDQLALFVGQE 853


>gi|330981875|gb|EGH79978.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 1178

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 262/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 610  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 668

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                    R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 669  ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 726

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E++ S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 727  SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 785

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 786  KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 845

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  +TASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 846  VAERILTSLITPFVLEGREFFLTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 905

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 906  QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 965

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 966  LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 1024

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1025 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1084

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1085 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1144

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+       
Sbjct: 1145 EHDCDEVQGYLFGRPMPPAQFEA 1167



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 461 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 520

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490
            +      W   I +      F  ++D             RL+ E  +R        AD 
Sbjct: 521 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 578

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 579 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 622



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG +   +H     +    +H  D  N++ + L          LQ
Sbjct: 368 LSQRVIYSNHHFGYTLGYSKSELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQ 427

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  ++ +    IR + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 428 RVLRFRDRESNWRSFDIREQALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRML 487

Query: 533 A 533
           A
Sbjct: 488 A 488



 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+     
Sbjct: 154 LAPLIGKCLIGLLLSILPLIALISLRRRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 213

Query: 426 ----DRVTTTPDIATILGLASGSMHGPIRNW---------LPYIHINDRDNFRTIL---- 468
                 V T  D   +L     S+   ++           L  + I  R+     L    
Sbjct: 214 QLEALEVRTGEDFERLLKSQPASLKRLLQQLRISELNEVALSLLDIEHREQAWQPLIEGE 273

Query: 469 ------------DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                        + +  +  RL+ E  +  A  +   + + +R +  +  D    I   
Sbjct: 274 SRSRPGVGIPIIQAVLAGQ-PRLELEICLTRASGEDQHLWLVMR-LPETRSDFDAVILSI 331

Query: 517 NDITEQKK 524
           +DIT +K+
Sbjct: 332 DDITSRKQ 339


>gi|323699469|ref|ZP_08111381.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. ND132]
 gi|323459401|gb|EGB15266.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans ND132]
          Length = 857

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 143/588 (24%), Positives = 272/588 (46%), Gaps = 13/588 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++     +   +         +    ++       + + ++          T P +A I
Sbjct: 271 ELMRTNTQLKIEIAERKVIGDALRKAEKKYRTIFENAVEGIYQSSYSGRFQDTNPALARI 330

Query: 438 LGL-ASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           LG  +   +   I +    ++++ DR   R      +  R     +  +VR  D +  W+
Sbjct: 331 LGYKSPEDLMSSIYDIGTQMYVDPDR---RKEFLRLIEERNEVKNFVSKVRKRDGRIIWV 387

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               R + + NG+I+ + G   DIT +KK+ + +   AF D LTG+PNR  FLD L   +
Sbjct: 388 AENARKIVDENGNIVCFEGSIEDITMRKKAEDQLKRQAFHDPLTGLPNRALFLDHLRMAM 447

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           + S    ++   V+ +D+D++K +ND LG   GD++L  + R + +  +  D +AR  G+
Sbjct: 448 ERSRRRKHM-FAVLYMDLDRFKVVNDSLGHDAGDELLRGVARVLEQCGRSVDTIARFGGD 506

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+    +        A  + + +  P  +   E+  +AS+G    T        +L+
Sbjct: 507 EFAILQEEISAPKDAIAIARRILEGVRQPFTIGGNEVFTSASLGIVLKTDGYDRPEALLR 566

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A+ AMY AK  G +  + F   +       + ++ DL  AV+  E  +VY PI+ L   
Sbjct: 567 DADTAMYRAKELGKSRFKVFNRKMHDQALQLMELETDLRRAVDLREFEVVYQPIVELATR 626

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + G EAL++W HP+ G I   +F+ +AE+  +I AI+  +LE     +  W+    +  
Sbjct: 627 RVCGFEALVRWRHPEHGIIGPGDFISLAEDTGLIYAIDNLVLEEACAQVRRWQTLVGVTD 686

Query: 794 ---IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + INI+ K    + L   +   +  +  S   + +  +ES +M NP  +  +L +
Sbjct: 687 GGELTVNINISGKHFGQSMLAGQISRALDDSGLSADALNIEITESALMDNPNVAEDILQQ 746

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKN 908
           L+ +G+ + +DDFGT  S LSYL   P D VK + S +    + +   AI+R++  + ++
Sbjct: 747 LKDLGVHICIDDFGTGYSSLSYLQRFPIDVVKVDRSFIVAVDTDQDSQAIVRTVFSLGES 806

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +   I+A+ +     ++ L R GC ++Q      P+    +  LL+ +
Sbjct: 807 MGLKIVAEGVETSGQLEFLEREGCRFVQGYFFYKPMSVADVDHLLEGQ 854


>gi|291569888|dbj|BAI92160.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 990

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 144/583 (24%), Positives = 298/583 (51%), Gaps = 11/583 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +I  T+I  +         +    ER  L      D+V         +   P    +LG 
Sbjct: 399 IIWDTLIMDISDRKQIEIALAESEERLRLVTENMSDLVCLHAPDSSYLYVNPSSEILLGY 458

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRI 499
               + G     +       ++ ++  ++  +    G  +   +++R  + ++ W+    
Sbjct: 459 TPEELIGKKPTDIF----QSQELYQVCMEYSLSILPGISRPIIYQIRKKNGEYIWLETLT 514

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           + + ++ G++      + D++++ K+ E +  +A  D+LTG+PNR   + +L   L  + 
Sbjct: 515 KVILDNQGEVRHLQSASRDVSDRIKAEEQLKYDALHDSLTGLPNRTHLMAQLDMALKRAQ 574

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            ++NL+  ++ +D+D +K +ND LG  +GD +L  + + I   ++  D+LA L G+ F I
Sbjct: 575 NNENLQLAILFLDLDNFKVVNDSLGHLIGDKMLSLVAKIIKNFVRDTDLLAHLGGDEFVI 634

Query: 620 ILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +L       +    A  + +S+   P+ + ERE+ V +SIG  + T+    + ++L++A+
Sbjct: 635 VLEYLEVIHEAIRVAERILESLRTSPLQIGEREVFVNSSIGIVARTNRHEKAEDLLRDAD 694

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAMY AKH G      F   +      ++ ++ DL  A++N+EL L Y PI+ +  ++I 
Sbjct: 695 LAMYRAKHEGRGRYAIFDPLMHFHAVQQMHLENDLRKAIKNNELVLYYQPIVNIKTQKIQ 754

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           GLEAL++W HP+ G +S   F+ IAE   +I  I  ++L +  + +  W++Q     + +
Sbjct: 755 GLEALVRWQHPERGLLSPGHFIEIAENTGLIIPIGKWLLHKACQQLEEWKNQFPSHCLKM 814

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ K L    L E +  +++    + + + +  +ES+++ N +++  LL +++  GI
Sbjct: 815 SVNLSVKQLE-GFLLEQLDEVLNSYNLNHNSLVMEITESMLVANVQKTCDLLSQIQAKGI 873

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S LSYL  +P +++K + S ++    +++   I +SII ++K ++  +I
Sbjct: 874 GLSIDDFGTGYSSLSYLHQLPVNSLKIDRSFVSPENLSDRHQVIAKSIIALSKLLKLHVI 933

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +        L ++GC+  Q    + P+  + I +LL ++F
Sbjct: 934 AEGVETPEQFYWLKKLGCEAAQGYLFSRPVPASEITELLSQQF 976



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/159 (9%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVR 425
                 V+++++    +   +       + +    +R           ++ +    D   
Sbjct: 257 YTTIAGVVVLLVWNRLLGVEIKRRNQVEKALIQSEQRFQKMAANVPGAIFQYVLHPDGSD 316

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +     +  + + ++    +     +H +D ++    +            +++R+
Sbjct: 317 QVLYMSEGCYELWEVRADTVVKDAKILWDMVHPDDLESMYESV-LISANNLAPWFWQWRI 375

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                +  W+    +P  + NGDI+ +  +  DI+++K+
Sbjct: 376 TTPSGKLKWLQSAGQPERHDNGDII-WDTLIMDISDRKQ 413


>gi|91781813|ref|YP_557019.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400]
 gi|91685767|gb|ABE28967.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Burkholderia xenovorans LB400]
          Length = 1036

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 148/556 (26%), Positives = 269/556 (48%), Gaps = 14/556 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G  +    G     L     +DRD 
Sbjct: 477  QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDAAEAIGHDCRLLQR---DDRDQ 533

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ + +G I  +IG+ ND+T+ 
Sbjct: 534  EGVALIRQALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPDQDGVITHHIGVINDVTDL 592

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ ID+D +K +ND 
Sbjct: 593  MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRHHKG-VAVVFIDLDGFKNVNDS 651

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SI+
Sbjct: 652  LGHSVGDRLLSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEKSLIAWMERVRVSIS 711

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++     S
Sbjct: 712  EPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771

Query: 703  --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ +++  L Y P + ++  +IVG EAL++W  P+ G +  S F+ +
Sbjct: 772  AGTRLNLERRLRRALRDNQFLLHYQPQVDIVSGQIVGTEALVRWRDPEVGLVPPSSFIPV 831

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+D+   PP  + +N++++     ++ + +  ++ +
Sbjct: 832  AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLDE 890

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 891  TGLEPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 950

Query: 881  VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 951  LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010

Query: 939  HVASPLGFNSILKLLK 954
            + A PL  ++I +LL+
Sbjct: 1011 YFAKPLSTDAISELLQ 1026



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 57/180 (31%), Gaps = 20/180 (11%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +  DI   AL         ++       V              +     +      ++  
Sbjct: 313 ISADISYHALNFMGRAAFFVLAD----DVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWK 368

Query: 422 DIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGY 474
           D+    +      A   GLA    + G      P R++   ++ +DR+            
Sbjct: 369 DLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRDFSSLLNDHDRE--------VAST 420

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              ++ +E  +   D      +    P ++ +G ++  +G   DITE+K++   +   + 
Sbjct: 421 GVPKMNFEVDLM-IDGVHRTTVTSKLPFTDGDGRVIGVLGSYTDITERKRADLALRLQSR 479


>gi|296161002|ref|ZP_06843813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. Ch1-1]
 gi|295888701|gb|EFG68508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. Ch1-1]
          Length = 1036

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 149/556 (26%), Positives = 269/556 (48%), Gaps = 14/556 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G  +    G     L     +DRD 
Sbjct: 477  QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDAAEAIGHDCRLLQR---DDRDQ 533

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ N +G I  +IG+ ND+T+ 
Sbjct: 534  EGVALIRQALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNQDGVITHHIGVINDVTDL 592

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ ID+D +K +ND 
Sbjct: 593  MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKG-VAVVFIDLDGFKNVNDS 651

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SI+
Sbjct: 652  LGHSVGDRLLSVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRVSIS 711

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++     S
Sbjct: 712  EPVWLDGTELYVGCSMGASLFPQDGEDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771

Query: 703  --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ +++  L Y P + ++  +IVG EAL++W  P+ G +  S F+ +
Sbjct: 772  AGTRLNLERRLRRALRDNQFLLHYQPQVDIVSGQIVGTEALVRWRDPEVGLVPPSSFIPV 831

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+D+   PP  + +N++++     ++ + +  ++ +
Sbjct: 832  AEESGLIGPLSEWVLREACRQNKAWQDEGL-PPARVSVNLSARVFQQRDIAKLVMQVLDE 890

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 891  TGLEPQYLELELTESTIMRNAEEAVSMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 950

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 951  LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010

Query: 939  HVASPLGFNSILKLLK 954
            + A PL  ++I +LL+
Sbjct: 1011 YFAKPLSTDAISELLQ 1026



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 20/180 (11%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +  DI   AL         ++       V              +     +      ++  
Sbjct: 313 ISADISYHALNFMGRAAFFVLAD----DVTDQINAEAEAQRSNQMLEAVIDNIPQRIFWK 368

Query: 422 DIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGY 474
           D+    +      A   GLA    + G      P R++   ++ +DR+   T +      
Sbjct: 369 DLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRDFSSLLNDHDREVVSTGVPKM--- 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                + +  +   D      +    P ++  G ++  +G   DITE+K++   +   + 
Sbjct: 426 ---NFEVDLMI---DGVHRTTVTSKLPFTDGEGRVIGVLGSYTDITERKRADLALRLQSR 479


>gi|119945725|ref|YP_943405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119864329|gb|ABM03806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 703

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 144/564 (25%), Positives = 266/564 (47%), Gaps = 21/564 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R    +  SG+ +WDW+I  + V      A I G+           +   +   D+    
Sbjct: 145 RLGHVLEVSGEGMWDWNIQTNEVFQNQKWADITGVKHS--KRSFSEFQDCLVEEDKKYVL 202

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
           T L + +  ++     E+R R  D +  W+  R + +  +  G     +GI  DITE+K 
Sbjct: 203 TSLQALIE-KKIPYDIEYRFRRPDGKVIWIWDRGQVLEYDDQGKPKLLVGIMQDITEKKF 261

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   AF D LT +PNR    DRL   ++ S   +     V+ +D+D +K +ND  G
Sbjct: 262 NQSEIELMAFYDTLTMLPNRALLNDRLNLAIEHSKRFEKY-GAVLFLDLDNFKILNDSYG 320

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRK 639
              GDD+LV + +RI  +++  D +AR  G+ F I+L   ++       K    A ++  
Sbjct: 321 HQAGDDLLVIVAQRIQSVIRKDDTVARFGGDEFVIVLNELDSEPVKAAIKAQRLAQSICH 380

Query: 640 SIAMPINL------LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           SI   IN+       + +  +TAS+G   +       SE+L+ A+LA+Y AK  G +   
Sbjct: 381 SIKQKINIKISNMAADIDYFITASVGITIFYGQSKVPSELLQLADLALYQAKKNGRDDSA 440

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F             + ++L  +++  +  L Y P        +V  EALI+W+HP+ G 
Sbjct: 441 MFDPVMQEKLDYSTCLDKELRQSLKQKDFVLYYQPQYDAKQN-LVSAEALIRWNHPELGL 499

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++  +F+ +AEE  +I  I  ++L    + +  W+       + + +NI++K +   +  
Sbjct: 500 VNPGDFIKVAEESNLILPIGDWVLSEACQQLKKWQSDPQYQHLSLSVNISAKQIWQKDFV 559

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            G++ ++S +  + S++KL  +ES+++ +   +   L  L   G++ +LDDFGT  S L 
Sbjct: 560 AGIKRIVSDSDINVSKLKLEITESILLRDINGTAEKLNDLVAFGLTFSLDDFGTGYSSLG 619

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +  + +++SII + KN    ++A+ +  E   + L  
Sbjct: 620 YLKNLPIDELKIDQSFIRDLFDNKMDLIMVKSIIDLGKNFGINVVAEGVETEAHFEILKE 679

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
            GC   Q  + + P+  +  + L+
Sbjct: 680 FGCKIYQGYYFSRPVPVSEFVTLI 703


>gi|254558955|ref|YP_003066050.1| sensory box-containing diguanylate cyclase/phosphodiesterase,
           PAS/PAC, GGDEF and EAL domains [Methylobacterium
           extorquens DM4]
 gi|254266233|emb|CAX21991.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase, PAS/PAC, GGDEF and EAL
           domains [Methylobacterium extorquens DM4]
          Length = 737

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 164/734 (22%), Positives = 307/734 (41%), Gaps = 23/734 (3%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           ++  I+      +   +     L IW     +     ++  +       R  A       
Sbjct: 1   MIAVIACAGALYAFQRHAHPTVLPIWFGAVLVVCGWRVVATVRRNARPPRRTASAS-AMR 59

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           + IA   +        P    S    T  +I++     I++ G             ++  
Sbjct: 60  NLIAEATLTVACLMSVPSWLLSQTTGTTYAILVCLLTGILWAGCLTLATVRAAAMVYVGT 119

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               + + +    +    ++  +L     L  +    T  +  L      Q +    +  
Sbjct: 120 GAAIVVIGLLWDNQDVEHLMLASLFPLGALTAMRSVDTQAKMFLDNQRQQQSLTKQSDLI 179

Query: 408 SLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD- 462
            L +      + D +W+ D        +      LG  S ++ G +      +   +   
Sbjct: 180 GLLLKDYEEQTSDWLWETDASLRYANPSDRFVEALGRPSHAIRGVVLG--SLLEDEEIAG 237

Query: 463 --NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               R  + +    R+           A  +  W  I  RP+ +     L Y G+ +D+T
Sbjct: 238 NATARLEVRACAEARQPFRDMVVPFTRA-GERRWWSISGRPVYDETRTFLGYRGVCSDVT 296

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             K +   I   A  D LTG+PNR    + L   L        +   V+ +D+D +K +N
Sbjct: 297 TAKAAELRIAHLAHHDALTGLPNRTFLSESLHQSLRDPDR---VCLAVLSLDLDGFKAVN 353

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +LV +  R+   +   DI+AR  G+ F ++ ++  +  ++ D A  + +S
Sbjct: 354 DRYGHPGGDALLVCVAERLQTKVSGGDIVARFGGDEFVVLNVAFTSPSEVEDLAHRLIES 413

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ PI L    +T+  SIG A   +   T+ E+LKNA+ A+Y AK  G      F     
Sbjct: 414 LSTPIPLDNESVTIGVSIGIAFAPTDGRTAEELLKNADAALYRAKTAGRGTFRFFEPEMD 473

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R    R  + +DL  A+   EL L Y P +R     I G EAL++W HP+ G IS +EF+
Sbjct: 474 RKLQARQRLVQDLRNALTRDELRLDYQPFVRSETGVISGCEALLRWRHPERGMISPAEFI 533

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I ++++++  R+  SW          I +N++       +L + + A +
Sbjct: 534 PLAEESGLIVPIGMWVIQQACREAASWPSTH-----RISVNVSPVQFRSRDLPQVILAAL 588

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + +  +P+R+++  +E+V++ + + +  +L ++R +G+ + LDDFGT  S LSYL   PF
Sbjct: 589 TSSGLAPARLEVEVTEAVLIDDADTALDILRQIRSLGVRVALDDFGTGYSSLSYLRRFPF 648

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           I+++I  MA+ +  T+ A+ +  E   K L + GC+ +Q
Sbjct: 649 DKIKIDRSFVRELDTRHDSQVIVQAIHDMAQGLGMTVTAEGVETEDQAKRLRQTGCEELQ 708

Query: 937 DSHVASPLGFNSIL 950
               + P   + + 
Sbjct: 709 GFLYSRPRPASELT 722


>gi|254470292|ref|ZP_05083696.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062]
 gi|211960603|gb|EEA95799.1| sensory box/ggdef family protein [Pseudovibrio sp. JE062]
          Length = 1031

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 182/785 (23%), Positives = 336/785 (42%), Gaps = 71/785 (9%)

Query: 197 GVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRAC 256
           G++  L +     +   R  M           L     +   L        G   +    
Sbjct: 228 GISVALGV--LFGFFAPRKVMYPTILLSLIGGLASALGNAQHL-----TIEGVAALSLLA 280

Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM--VTASIARIT 314
           S ++++++ I+F+       + H    Y T  GI  +  LF  +   P   V A      
Sbjct: 281 SALSVTAARIVFIRT-----KTHKVTIYYTSLGIGSLVGLFGYTLALPSDSVLAGWTFDN 335

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
                +  +   ++  M G             IF +      A    L++  I   +   
Sbjct: 336 FVLQAVGASLTTLWAFMTG--------LILFSIFKYSGMFQKADEIDLNDSPIVSTISQM 387

Query: 375 LVLIVILI------------GFTVIQHVLATG--YFSQGIFSDGERQSLA---------- 410
             LI  L+              T  Q  LA+    F   + SD +R+ ++          
Sbjct: 388 ENLIGKLVWHDAKLDERLPVRDTDPQERLASLFNSFLDKLQSDEKRRKISETSDSKQQEE 447

Query: 411 ---VLGSGDIVWD---WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
              +    +  ++          V     +  +LG ++G M G   + L ++  + R+  
Sbjct: 448 LSKLATFAEGAFEGLAISTDGIIVECNHVLYELLGYSAGEMRGS--SLLSHVAPDYREKA 505

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R  + +           E  + +   +   + +R R M    GD    +    D+ +QK+
Sbjct: 506 RAAIQA-----NEPTPNEVILLSKTGERIPIEVRGRLM--EVGDENLRVSAVRDMRKQKE 558

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               IL  A  D LTG+PNR  F +R    ++  A  +     VMV+D+D++K IND+ G
Sbjct: 559 DEARILHLAQHDMLTGLPNRTYFRERFQQAIENQACAEETISAVMVLDLDRFKDINDLYG 618

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD ++ ++ RR+   +   D +ARL G+ F II ++   + ++      + + ++ P
Sbjct: 619 HPVGDKLIQTVARRLNACVTHHDTVARLGGDEFAIIQVNLKTTAEVGLLTNKIIEVLSKP 678

Query: 645 INLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           I++     I  +ASIG A          E++  A++A+Y AK  G N    F      + 
Sbjct: 679 IHVGNNITIRTSASIGIALIPEHGTDPDELMSKADIALYEAKEAGRNTFAFFEDKMEEAI 738

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   ++ DL  A+EN EL L + P  R     IVG EAL++W+HP+ G I+ + F+ +A
Sbjct: 739 LLRRTMEGDLRNALENEELQLHFQPQARSDTRSIVGFEALLRWNHPEKGLIAPNNFIPVA 798

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  ++L         W ++       + +N++     D  L + ++  ++++
Sbjct: 799 EESGLIIPIGRWVLNEACAQASQWPERY-----RVGVNLSPVQFCDEYLIQEVEGALARS 853

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P R++L  +ESV++ +  R+   L +L+++GI++ LDDFGT  S LSYL   PFD +
Sbjct: 854 GLTPERLELEITESVLIHDDRRALNTLRQLKELGITIALDDFGTGYSSLSYLRRFPFDRL 913

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++G   T +  AI+R++I + + +   +IA+ +  E +++ L    CD +Q   
Sbjct: 914 KIDRSFVSGVTQTPELAAIIRAVIDLGQALGMEVIAEGVETEPELELLRNESCDEVQGYL 973

Query: 940 VASPL 944
           +  P 
Sbjct: 974 IGRPQ 978


>gi|70732650|ref|YP_262413.1| developmental regulator MorA [Pseudomonas fluorescens Pf-5]
 gi|68346949|gb|AAY94555.1| developmental regulator MorA [Pseudomonas fluorescens Pf-5]
          Length = 1282

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 150/565 (26%), Positives = 267/565 (47%), Gaps = 17/565 (3%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   + N L   
Sbjct: 714  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSQVLDQLPNMLTV- 772

Query: 457  HINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
              +D+   + R +L     +     + E  ++  + + +   + I  + +  GD+  Y+ 
Sbjct: 773  --DDQQEAHLRYVLKQLNQHST--WEGEVWLKRRNGEHYPAWVGITAVLDDEGDLASYVC 828

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              +DI+E+K S + I   A+ D LT +PNR  F DRL T L  +    +    +M +D+D
Sbjct: 829  FFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQSAERQKSW-VVLMFLDLD 887

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KI 630
            ++K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L   ++      + 
Sbjct: 888  RFKPINDSLGHAAGDRMLKEMATRLLGCVDDDDTVARMGGDEFTLLLQPRSSREMALNRA 947

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N
Sbjct: 948  IHVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKN 1007

Query: 691  HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            + + ++     S  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+
Sbjct: 1008 NFQFYQADMNASALERLELESDLRHALEQEEFVLYYQPQFSGDGKRLTGAEALLRWRHPR 1067

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G +   +F+ + EEL ++  +  +++    R + SW       P  + +NI+++   D 
Sbjct: 1068 RGLVPPGDFIPVLEELGLVVDVGDWVISEACRQLKSWHQAKVRVP-KVSVNISARQFSDG 1126

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +L   +  ++  T   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S
Sbjct: 1127 QLGMRIATILKDTGLPPACLELELTESILMREVSEAMQILDGLKNLGLSIAVDDFGTGYS 1186

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L+YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ 
Sbjct: 1187 SLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEF 1246

Query: 927  LTRMGCDYIQDSHVASPLGFNSILK 951
            L   GCD +Q      P+  N    
Sbjct: 1247 LREHGCDEVQGYLFGRPMPANRFEA 1271



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      S+ +    +R  +      D+++  D        +P +  +LG    
Sbjct: 565 IGVAKDITDQIEASESLRDSEQRYRMLAESISDVIFSTDSKLSLNYVSPSVHAVLGYDVE 624

Query: 444 SMHGPIRNWLPYI-HINDR-------DNFRTILD--SFVGYRRGRLQYE---FRVRAADN 490
            +      W   I +           D     LD    +   R ++Q +   F    AD 
Sbjct: 625 WIFQN--GWQSTIANPQQLSGIYTLMDRVSKALDKPEQLAQLRSQVQTQLFLFDCLRADG 682

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G     +G+  DI++Q+++ + +   A 
Sbjct: 683 RKIPIELRLVLVWDEHGAFEGVLGVGRDISQQRRAEKDLRMAAT 726



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              I  + +       +       S  V    D ++  D++  R + +   +   LG   
Sbjct: 432 ILSISDITSRKLIELSLLEREGFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGQTLGYNK 491

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H  D D +  +          +L Q + R R    Q+    IR +
Sbjct: 492 TELHQMGEYFWEILLHPEDADLYHRLRQEQRHSAYAQLLQCQLRFRHRSGQWRRFEIREQ 551

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  +    + R IG+A DIT+Q ++ E + 
Sbjct: 552 ALARDRYDQVTRIIGVAKDITDQIEASESLR 582


>gi|167031719|ref|YP_001666950.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida GB-1]
 gi|166858207|gb|ABY96614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida GB-1]
          Length = 1276

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   +   L  +
Sbjct: 708  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLT-V 766

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R ++     ++RG  + E  ++  D   +   + I  + +  GD+  Y+   
Sbjct: 767  DEQQEGHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 824

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL   L  +         +M +D+D++
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 883

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           +   
Sbjct: 884  KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 944  VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP  G
Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  ++L   +R + +W       P  + +NI+++   D +L
Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 1122

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ ++   P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1123 GTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 1182

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++   +IA+ +     ++ L 
Sbjct: 1183 NYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLR 1242

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1243 EHGCDEVQGYLFGRPMPAHQFEA 1265



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ +    +R  +      D+++  D +      +P + ++LG  +  +      W 
Sbjct: 569 IEASQSLRDSEQRYRMLAESISDVIFSTDSLLKLNYVSPSVQSVLGYQADWIFAN--GWQ 626

Query: 454 PYI-HINDRDNFRTILDSFVGYRRGRLQYE------------FRVRAADNQFHWMIIRIR 500
             I +        ++++          Q              F    AD +   + +R+ 
Sbjct: 627 SIIANPAQLTGIYSLMERVSKAMGEPSQLAQLRSQLPTQLFLFDCLRADGRKIPIELRLV 686

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + + +      +G+  DI++Q+++ + +   A 
Sbjct: 687 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 720



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  R+  +   +   LG   
Sbjct: 426 ILSISDITSRKQVELSLLEREGFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGQTLGYDR 485

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  +++ +            LQ + R R  D  +    IR +
Sbjct: 486 TELAQMGDRFWELLLHPEDAAHYQALRQQQRDSGHDQPLQCQLRFRHRDGGWRCYDIREQ 545

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++ G + R IG+  D+T Q       + S +     A
Sbjct: 546 VLTRDAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 586


>gi|307151595|ref|YP_003886979.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
            [Cyanothece sp. PCC 7822]
 gi|306981823|gb|ADN13704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7822]
          Length = 1409

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 147/579 (25%), Positives = 283/579 (48%), Gaps = 8/579 (1%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +   +       + +    ER   A++ +   +       + V        + G   
Sbjct: 832  RLVLAHDITERLKAEKALQESKERFHRAIVDAPLPILIHAEDGEIVQVNHAWTELSGYHL 891

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              +   I +W    +   +D  R+++D          + EF +     +         P+
Sbjct: 892  DELS-TIADWTEKAYGERKDIVRSVIDQLYEIDGKVEEGEFAITIKSGETRIWDFSSAPL 950

Query: 503  -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               ++G  L  I +A DITE+K++ E +  +   D LTG+PNR   LDR+   +      
Sbjct: 951  GKLADGRRL-IISMAIDITERKQAEEQLRHSVLHDGLTGLPNRTLLLDRVEQAIKRKQQQ 1009

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             N    ++ ID+D++K +ND LG  VGD +L ++  ++   ++  D +AR  G+ F I+L
Sbjct: 1010 PNYLFAILFIDLDRFKVVNDSLGHLVGDQLLKTIADKLQRCVRPTDTVARFGGDEFVILL 1069

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                        A  + +       L E+E   +ASIG    +S + T SE+++NA++AM
Sbjct: 1070 EDLTIWTDATKMAQRITEEFESSFTLQEQEYFTSASIGITFCSSPEQTPSELVRNADIAM 1129

Query: 682  YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y +K  G      F   + +  +  + ++ +L LA+E  E  + Y PI+ LM+  ++G E
Sbjct: 1130 YRSKEAGRARYTMFDPIMHTQATQLLELETNLRLALEREEFIVYYQPIVSLMNRNLLGFE 1189

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILI 798
            AL++W HP+ G IS + F+ +AEE  +I  +  ++L    R + +W++Q      + + +
Sbjct: 1190 ALVRWIHPEKGVISPANFIPVAEETGLIIPLGEWVLRESCRQMKAWQEQFIGAENLRVSV 1249

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++ K L    L   +  ++++T      +KL  +ES++M N E+   LL +++   I +
Sbjct: 1250 NLSGKQLQQPNLINRIDNILTETGLEGKNLKLEITESMLMNNKEQVSELLLQMKAKKIQV 1309

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916
            ++DDFGT  S LSYL Y+P DT+K + S ++  ++  +   I+ +II +A +++  ++A+
Sbjct: 1310 SIDDFGTGYSSLSYLHYLPVDTLKIDRSFVSRMSQVGENFEIVEAIITLAHHLQMDVVAE 1369

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  E  +++L ++GC++ Q    + PL    I+  L+ 
Sbjct: 1370 GVETEQHLRQLQQLGCEFGQGYFFSKPLESEKIVSWLER 1408



 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I   +I+         + +    ER  LA+ GSGD +W+W++    +   P+    LG  
Sbjct: 458 IETALIKSQAKYEQLVEKLSKSEERLQLALEGSGDTIWEWNLGTGELYCDPNWIRRLGYD 517

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                  I  W   I      +    L++++  +   L  E++++  + ++ W+  R + 
Sbjct: 518 PREEAINIEWWRSKIDPETLSDHEAALENYLNGKTEYLALEYKIQTLEGEWLWIGGRGKC 577

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  +     L+ +G   DITE K++ E +   
Sbjct: 578 IAYDQQRKPLKILGTHRDITETKQTQENLRQQ 609



 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 3/166 (1%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +   L+   +L++ L  +  ++           + +   R    V    + +  +     
Sbjct: 271 LMSGLLITTILLMSLWRYISLRPFYRLQQIEAALRASESRYRGIVEDQSEFICRYRPGGT 330

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                            ++      +   I+  D+      + + +      + +E RVR
Sbjct: 331 LTFVNQAYCRYFQKTPAAVLDN--TFWDLIYSEDQPQVAQNI-ASLTPENPMITHEHRVR 387

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  +  W     R + +   +I+ +  +  DIT+ K+    +   
Sbjct: 388 LSSGEIRWNQWTNRVIMDEKRNIIEFQAVGRDITQLKQVEAALRQL 433



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 11/148 (7%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLA 441
              + Q +       + +    E+  L    + + +W +D+     +          G  
Sbjct: 708 SIAIGQDITERKRIEEILRESEEKYRLFFDANPNPLWVYDLETFAFLEVNQATIEHYGYT 767

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRI 499
                             D      +L+ ++           ++R R A+ +   + I  
Sbjct: 768 REEFL--AMTIRDIRPPEDVP----LLEQYILQINPHFNRSGQWRHRKANGEIIDVEITS 821

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527
             +    G   R + +A+DITE+ K+ +
Sbjct: 822 HGL-EYAGRKARLV-LAHDITERLKAEK 847



 Score = 47.6 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +  T    + +    E     V     ++  +D   + +    +   I G +    + 
Sbjct: 594 RDITETKQTQENLRQQQELLKTIVEQIPVMLAYFDQHYNLLWVNREWEKIWGWSLE--NR 651

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              + L          +R  + +++   +G+ + +F++   D +          +  S+G
Sbjct: 652 QKGDLLAEFEPE--SEYRQSVLNYIKSAQGKWR-DFKILVRDGRIIDTSW--ANVKLSDG 706

Query: 508 DILRYIGIANDITEQKKSLE 527
                I I  DITE+K+  E
Sbjct: 707 TS---IAIGQDITERKRIEE 723


>gi|114045822|ref|YP_736372.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113887264|gb|ABI41315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1504

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 144/555 (25%), Positives = 272/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P  + I G +   +          IH       RD F 
Sbjct: 958  VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY-----LIHLAYSRQQRDLFN 1012

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             I    + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+
Sbjct: 1013 GIEQQLLRHK--HWAGEIWIRNKARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1070

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1071 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1129

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             +GD +L ++  R+   ++  D +ARL G+ F IIL     +      +  + K+   P 
Sbjct: 1130 HIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1189

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +       ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1190 LLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1249

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A+  +EL LVY P   L +  + GLEAL++W H + G IS +EF+ +AEE
Sbjct: 1250 HVQLEAGLKQAISRNELSLVYQPKFCLRNGSLTGLEALLRWHHSELGPISPAEFIPLAEE 1309

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++    + +  W +      I + +N++++ L   ++   ++  ++ +  
Sbjct: 1310 TGIINQIGHWVINHACQQLAEWNELGLG-NISMAVNLSARQLK-ADIISTIEVALAVSGL 1367

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++M NP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1368 PAKVLELELTESMIMANPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1427

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1428 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1487

Query: 942  SPLGFNSILKLLKER 956
             PL     L LL++R
Sbjct: 1488 KPLSAQDCLALLQQR 1502



 Score =  102 bits (254), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            I +  ER  LA+  SGD +WDW+I   +V  T     +    S S+           H 
Sbjct: 827 SIRASEERLKLALWASGDGMWDWNIQEQQVYRTHTDIPVPQWNSHSLLHDNA------HP 880

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
            DR+ F+ +L   +  R    + E+R+  +   + W++ R + + +N+    +R  G   
Sbjct: 881 EDRERFKQVLTEHLLGRSPFFEVEYRIEHSPGNWLWILERGKVVETNAQAQPVRMTGTTR 940

Query: 518 DITEQK 523
           +IT +K
Sbjct: 941 NITSRK 946


>gi|297539270|ref|YP_003675039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylotenera sp. 301]
 gi|297258617|gb|ADI30462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylotenera sp. 301]
          Length = 1036

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 145/589 (24%), Positives = 262/589 (44%), Gaps = 18/589 (3%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +   ++     Q +     ++S     +  IV   D+             I G     
Sbjct: 451  AELALSISELSAKQSLAELKYQKSAVDEHA--IVSVTDVQGIITYANSKFCKISGYTEEE 508

Query: 445  MHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G   + L    H   +  F+ +  +    +      E   R  D   +W+   I P  
Sbjct: 509  LLGQDHHILSSGYHP--KGFFKEMYLTLATGK--PWHDEICNRTKDGHLYWVDTTITPFM 564

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              +G    YI I  DIT++K + E     A  D LT + NR+  LDRL   L  SA    
Sbjct: 565  ADDGKPKSYISIRTDITQRKAAEEKNNILALYDTLTNLANRRLLLDRLKQALASSARSSR 624

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             R  ++ +D+D +KK+ND LG  VGD +L ++  R+   ++  D +AR  G+ F ++L  
Sbjct: 625  -RGALLFLDLDHFKKLNDTLGHDVGDTLLQAVASRLTSCIREGDTVARFGGDEFVVLLAD 683

Query: 624  ENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
             +      + +  D A  M  ++  P  L       TASIG   +   ++   E+LK A+
Sbjct: 684  LSEHAFEAAAQTKDIAEKMIITLNQPYQLKTNIYHNTASIGATLFVGHELEIDELLKQAD 743

Query: 679  LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            +AMY +K+ G N +  F      +      ++ +L  A++  +  L Y   +     +  
Sbjct: 744  IAMYQSKNEGRNTLCFFDPKMQEAIAARVDLENELRKAIQEQQFQLHYQIQVS-STGQAF 802

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            G EALI+W HP+ G I    F+ +AEE  +I  I  ++L+     + +W+       + +
Sbjct: 803  GAEALIRWQHPERGMIPPYNFITLAEETGLILQIGQWVLDTACAQLKTWQQIPLTQNLLL 862

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N+++K     +  + ++A + K   +P+ +KL  +ES+++ N       +  L KIG+
Sbjct: 863  AVNVSAKQFFQVDFVDQVKATLQKYDVNPTYLKLELTESMLVYNINDIITKMNALSKIGV 922

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
              +LDDFGT  S L YL  +P   +K + S +      +   AI+R+II MA ++   +I
Sbjct: 923  IFSLDDFGTGYSSLQYLKMLPLSQLKIDQSFVRDIATDKSDAAIVRTIITMAHSLGIDVI 982

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            A+ +  +   + L   GC   Q    + P+  +    L++ +  ++K+ 
Sbjct: 983  AEGVETDEQKQFLLDNGCVQYQGYLFSRPVQIDEFDYLIRTKMQILKSA 1031



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 7/160 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +   L   + +++I I        L      Q      E    +V  + D ++  +    
Sbjct: 300 VVDLLKYLMPIVLIFICILGYILYLRHRERKQA-EESLEMMRFSVDNAHDSIFWINREGH 358

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +            +   M       L     + +    T     +  RRG +  E R R
Sbjct: 359 ILYVNLAACMEREYSLKEMLQMRIFDLD---PDYQPGIWTPHFEDLS-RRGSISLETRHR 414

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             + +   + +    + N NG    +  +  DITE+K++ 
Sbjct: 415 TKNGRIFPVEVSANYI-NLNGKEFNF-AVLRDITERKQAE 452


>gi|56419233|ref|YP_146551.1| hypothetical protein GK0698 [Geobacillus kaustophilus HTA426]
 gi|56379075|dbj|BAD74983.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 947

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 144/664 (21%), Positives = 269/664 (40%), Gaps = 15/664 (2%)

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357
            M  YY    +   R     +   +    ++  ++   +               +    A
Sbjct: 294 GMLLYYSAALSGYTRPLFDGVAAVFGQAALFPAVEVLVKDAYTAVRPAAFAAISLAETAA 353

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
             +            G     ++ +   +             +    +R       + DI
Sbjct: 354 SAESGLLSPWSSPPEG-----MMTLAQLMSTSSRDMERLHVRLQMSEQRYKSLFEHNTDI 408

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  D+     +  P    +LG     +       L YIH ND           +     
Sbjct: 409 VYSTDLHGRLTSVNPAFEQVLGYKKEEILYTNS--LKYIHPNDIPRVTRYFYRALRGNIQ 466

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E  +     +     ++  P+   +G  +   GI  +ITEQKK+ E I   A+ D 
Sbjct: 467 TYNLE--IPTKSGERLLFQMKNIPII-VDGKKVGIYGIGRNITEQKKAEEKISYLAYYDI 523

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            T +PNR  +++  +  LD +      +  V +ID+D++K IND +G   GDD+L  L  
Sbjct: 524 DTNLPNRTKWMELFSEQLDKAKQKRR-KMAVALIDLDRFKWINDSVGHYAGDDILRQLVE 582

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           RI  +L     L R  G++F ++   +       + A+ + + +A PI    +E  VTAS
Sbjct: 583 RIRRVLPPSAELGRFHGDKFCLLFPLKTEVQAATEAALRIVREVARPIVYDGKEFFVTAS 642

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715
           +G A +         +L++A++A+  AK  GGN VE +           ++    L  A+
Sbjct: 643 VGLAMFPDDGEDEHALLRHADMAVNMAKKGGGNRVERYCAQMNEEAMHRLEMGGHLRRAI 702

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E +EL+L Y PI+ +    +   EALI+W HPK G +   EF+ +AEE  +I  I  ++L
Sbjct: 703 EENELFLCYQPIVDVHTGAVKATEALIRWRHPKLGLVRPDEFIPLAEETGLIHEIGRWVL 762

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   R    W++      + I +N++          + ++  + ++  SPS + L  +E 
Sbjct: 763 KTACRQTKQWQEITGNNRLSIFVNVSPVQFQHERFVDNVKQALKQSRLSPSCLHLELTEH 822

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            ++     +   +  LRK+G+ + +DDFG+  S   YL  +P   +K + + +       
Sbjct: 823 SMLRYLSSTMRTMDELRKLGVGIAVDDFGSGYSSFHYLKRLPATILKIDRAFIEQLHANA 882

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI++++I M   +    IA+ +     +  L  + C Y Q      PL    +++ +
Sbjct: 883 SDEAIVKAMITMGHGLGLETIAEGVETPEQLNRLRDLQCTYAQGYVFCPPLLAEEVMQYV 942

Query: 954 KERF 957
            E+ 
Sbjct: 943 TEKQ 946


>gi|152999827|ref|YP_001365508.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151364445|gb|ABS07445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 921

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 143/560 (25%), Positives = 268/560 (47%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G     + G   R +    H  
Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F  + ++ +    G+   E   R  +       I I  + +  GD+  ++ +  DI
Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK++   +   A+ D LT +PNR  F+ +L   +  +    NL+   ++ID+D +K I
Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   +   D+L+R+ G+ F  ++   +N+         +R+
Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 602

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + +    +  +L+NA+ AMY AK+ G N+   +  S
Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 662

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG EAL++W  P+ G IS + 
Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 722

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE   R  + W  +       I +N+A + L  +   + ++ 
Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLREGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T      ++L  +ESV+M NP+ +   L RL  +GI L++DDFGT  S L+YL  +
Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKRLGDLGIELSVDDFGTGYSSLNYLKKL 841

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  IIA+ +  +     L +  CD 
Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P     +   L 
Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921


>gi|257095583|ref|YP_003169224.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257048107|gb|ACV37295.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1399

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 147/581 (25%), Positives = 278/581 (47%), Gaps = 10/581 (1%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            + L G  ++  +       +   +     + A   S + +   D     +        + 
Sbjct: 820  ITLRGEVILHTLWRDISERRVTETRLRLLAAAFEHSAEAIMVSDRDNRILEVNDAFCRLT 879

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            G A+  + G     L        + +RT+  +      G  Q E   R  D  ++   + 
Sbjct: 880  GYAADEVRGSDPRLLSS-GRTSAEEYRTMWQAI--NSTGHWQGEVWDRRKDGSYYPKWLS 936

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            I  +  + G+   YIG   DI+E+K + E I   A  D LT +PNR +   RL   L  +
Sbjct: 937  ISTIRGAEGNTEYYIGSFVDISERKAAEEKISHLAHFDTLTDLPNRSNLQGRLDQALASA 996

Query: 559  ATDDNLR-PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
              + + R   VM +D+D++K IND LG  VGD +L+ +  R+   ++  D++ARL G+ F
Sbjct: 997  RREGHGRSVAVMFLDLDRFKNINDTLGHHVGDALLLEVAARLRSSVRDSDVVARLGGDEF 1056

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++L    ++L     A  + K+++    +    +  T+SIG A + +   +   +++NA
Sbjct: 1057 VVVLTG-ADALAAERVAGKILKALSRAYQIEGHALHSTSSIGIAVFPADGESVEVLMQNA 1115

Query: 678  ELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            + AMYHAK  G N+V+ F   ++   SDR  ++EDL LA++  +  L Y P +      +
Sbjct: 1116 DAAMYHAKSAGRNNVQFFTASMNEAASDRRQLEEDLHLALQQKQFVLHYQPQVDAQ-RRV 1174

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              +EAL++W HP  G +  + F+ +AE+  +I  I  ++LE     I +W   A    + 
Sbjct: 1175 FAVEALLRWQHPHHGLVPPARFVPLAEDTGLIVPIGQWVLETACAQIKAWSVDARTRKLQ 1234

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            + +N++++     +  E ++  I  +  +P+R+KL  +ES+V+ N   +   +  ++ +G
Sbjct: 1235 VAVNVSARQFRQPDFVELLRQAIDNSGANPARLKLELTESLVLDNVADTIDKMNAIKLLG 1294

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
            ++ ++DDFGT  S LSYL  +P D +K + + +    E      I ++I+ M +++   +
Sbjct: 1295 VTFSMDDFGTGYSSLSYLTRLPLDQLKIDRAFVCRLPENRSDAVIAQTIVTMGRSLGLKV 1354

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +A+ +  E   + L   GCD  Q    + PL  ++    L+
Sbjct: 1355 VAEGVETEAQRQFLDSHGCDGYQGFLFSRPLAVDAFEDFLQ 1395



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 16/164 (9%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V A     +    +      AV  S   +   +   +     P    + G +     G 
Sbjct: 579 WVFADISERREAEEESRNLLQAVEQSPVAIVITNRNAEIEYVNPSFTRVTGYSRLEAIGQ 638

Query: 449 -IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             R        +D   +R++  + +  +       F  R  + +  W    I P+   +G
Sbjct: 639 NPRILQSGEAPSD--TYRSLWQTLLEGK--VWTGLFHNRRKNGELFWEKASIAPIIGDHG 694

Query: 508 DILRYIGIANDITEQKKSLE--GILCNAFQDNLTGIPNRQSFLD 549
           ++  Y+ +  D+TE+ ++ +       AF         R+ F D
Sbjct: 695 EVTHYLAVKEDVTERLRADKLLQESEEAF---------RRLFED 729



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 51/151 (33%), Gaps = 5/151 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              + V       + + ++ ER  +       +G  +    +    +   P +  ++ + 
Sbjct: 324 REAKVVADLVERDRQLRANSERLEIFQRLAENAGQGIGMAQLDGSLLYANPALRRMIDMP 383

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            G+      ++  +    + +  +  +   +    G+   E  +R+   +    I  +  
Sbjct: 384 QGAACSDY-SFKQFYSREEANRLQHAVLPMLL-PAGQWTGEIELRSLSGRTTPAIHTLFV 441

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           + N+  +      +  DI+E+K+  E     
Sbjct: 442 VHNTADEPPVIATVLADISERKEMEERNRQL 472



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           VI      I         ++ + ++ E     +LG+  +       R  V+    +  I 
Sbjct: 451 VIATVLADISERKEMEERNRQLLAEME----TLLGNALVGIVHLRQRCVVSCNRRLEEIF 506

Query: 439 GLASGSMHGPIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           G A G + G         +      +       + V   R     E  +R  D    W  
Sbjct: 507 GYAPGELIGKSSQVF---YPSIEVFEKIGARAYAVVAENRN-FSGELTLRRKDGSLFWGA 562

Query: 497 IRIRPMSNSNGDILRYIGIANDI 519
           +  R + + +      I +  DI
Sbjct: 563 LTGRAI-DPSQPHAGSIWVFADI 584



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 6/153 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442
             V + V       + +    E        + D +         +        +LG  + 
Sbjct: 700 LAVKEDVTERLRADKLLQESEEAFRRLFEDAKDPLLLL-KDGSFIDCNRATLELLGYGSK 758

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR 500
             + G     +      + + +            R G  ++E+  + AD     + + + 
Sbjct: 759 AQLLGRDAADISPARQPDGQASGEKAAALIAAALRIGYHRFEWTHQRADGSPVPVEVTLT 818

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           P++     IL  +    DI+E++ +   +   A
Sbjct: 819 PITLRGEVILHTL--WRDISERRVTETRLRLLA 849


>gi|124267849|ref|YP_001021853.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylibium petroleiphilum PM1]
 gi|124260624|gb|ABM95618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylibium petroleiphilum PM1]
          Length = 1063

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 157/601 (26%), Positives = 273/601 (45%), Gaps = 11/601 (1%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            PA        V   G   +    A     + +    E  +     S + +   D  R  +
Sbjct: 467  PAWAVLSARRVRYQGQDAVLTAFAPINHLKLMERRLELWAKVFEASSEGILIVDAQRRIL 526

Query: 429  TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
            T     +   G     + G   + +  +   D           V  R G  Q E +VR  
Sbjct: 527  TANQAFSRHTGYELQEVVGEKPSLMLAVEQTDEQ--SAAFWQSVSNR-GTWQGELQVRRR 583

Query: 489  DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
            +   +   + +  +  S GDI  YI  + DI+++KKS + I   A  D LT +PNR    
Sbjct: 584  NGSEYPAWLMVNAVRQSQGDISHYIFTSIDISDRKKSEQRIRFLADHDVLTELPNRSLCT 643

Query: 549  DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            +RL   +  +      +  VM ID+D++K IND LG  +GD +L S+ RR+ E ++  D 
Sbjct: 644  ERLRMAVQQAQRSGQ-QVAVMFIDLDRFKDINDSLGHHIGDGLLRSVARRLLEAVRAGDT 702

Query: 609  LARLSGNRFGIILISENNSLKIADFA-IAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            ++RL G+ F I+L    +  ++       +   I  P  +   E+ V+ S+G A +    
Sbjct: 703  VSRLGGDEFVIVLNGVQHIDEVTHIVDQRLIPLIRQPHLVEGAELHVSCSVGIAVFPDDA 762

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
                E++K+A+ AMY AK  G +  E F   ++     R+ +  DL  A+E  +  L + 
Sbjct: 763  TDIDELMKHADTAMYQAKAGGKDAAEFFTAEMTQRAESRMQLDADLRRALELGQFELHWQ 822

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P +      ++G+E L++W HP+ G +S + F+ +AEE  +I  I  +++E   R + +W
Sbjct: 823  PRVSAAGGVLLGVEGLLRWQHPQRGLVSPAHFIPLAEETGLIVPIGAWVIEEACRQVAAW 882

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            R Q   P   + IN++++ L D+ L + ++A + +    P  ++L  +ES+VM + ER+ 
Sbjct: 883  RAQGL-PSFGVSINLSARQLRDDGLTDLVRASLLRHGVPPGVLELELTESMVMDDAERNL 941

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
              +  LR +G+ L +DDFGT  S L+YL   P D +K + S +          AI  +II
Sbjct: 942  RQMHTLRDLGVGLAIDDFGTGYSSLAYLNRFPIDKLKIDRSFVHDMLADPTDRAITMAII 1001

Query: 904  PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF-PLVKN 962
             +   +   ++A+ +        L    CD +Q      P+   +    L ER  P+ + 
Sbjct: 1002 GLGHALGLQVVAEGVEEPRAAALLREARCDELQGYLFGRPMPVPAFEAWLAEREAPVTRV 1061

Query: 963  T 963
            T
Sbjct: 1062 T 1062


>gi|320322619|gb|EFW78712.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
            glycinea str. B076]
          Length = 1245

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 267/563 (47%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 677  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 735

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 736  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 793

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 794  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 852

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 853  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 912

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 913  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 972

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 973  QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1032

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL +++ +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1033 LVPPNDFIPVLEELGLVEEVGDWVLTEACRQLKQWHQARVRVP-KVSVNISARQFSDGQL 1091

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1092 GKRIANILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1151

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D ++ + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1152 NYLKQFPIDVLEIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1211

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
               CD +Q      P+  +    
Sbjct: 1212 EHDCDEVQGYLFGRPMPASQFEA 1234



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 528 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 587

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 588 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 645

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 646 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 689



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 395 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 454

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 455 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 514

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 515 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 555


>gi|298506546|gb|ADI85269.1| sensor diguanylate cyclase/phosphodiesterase, CHASE4 and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 873

 Score =  548 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 146/595 (24%), Positives = 272/595 (45%), Gaps = 18/595 (3%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VR 425
           +   L    V+ V  +    +          QG     ER  L V  +   +   +    
Sbjct: 281 VTYFLTWFAVVGVCFVFVINLFWRRLLESLQQG-RRSEERNRLVVERTNQAILLLEPGAG 339

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +   P    +LG +   + G   + L            + L+  +   R     E  +
Sbjct: 340 TIIDANPATCVLLGFSRNELAGSDIHAL-LSGP--VQEVDSELERCLRETR-----ELSL 391

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D     +      + + +   L    + +DITE+++  E +L  A  D LTG+PNR 
Sbjct: 392 CHRDGAELVVEAMATQIPHGDDQALCL--MFHDITERRRFQEELLHQATHDTLTGLPNRS 449

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              DRL   ++ +     +   +++ D+D +K +ND LG   GD +L S+  RI   ++ 
Sbjct: 450 LLEDRLNQAVEGARRRGQM-VALLMFDLDNFKVVNDTLGHTAGDQLLRSVAARIRSFVRS 508

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D  ARL G+ F I+L +          A + R  +AMP +L  REI +TAS+G + +  
Sbjct: 509 CDTFARLGGDEFVIVLTNLTRMDDAVTVAESFRNILAMPFSLGGREIFITASMGISLFPD 568

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723
              T   ++K A+ AMYH K  G N  + F   ++   + R+ I+  L  A+E  E+ L 
Sbjct: 569 DGDTMEALIKKADTAMYHIKESGRNSFQFFAEEMNQKVNARLAIETGLRRALEKGEMLLH 628

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P +      +VG+EAL++W+ P  G IS ++F+ IAE+  +I  +  ++L       +
Sbjct: 629 YQPRLEPGTGAVVGMEALVRWNSPDMGLISPADFIPIAEDSGLIVEVGDWVLATACCQAL 688

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W    +   + + +NI+++  + ++  + +  +I ++  +P  ++L  +E+ +  N + 
Sbjct: 689 EWHRMGHD-SLRVSVNISARQFVRHDFVDRVVRIIEQSGLAPHFVELELTETALTHNVDE 747

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +  ++ RLR+ GI++++DDFGT  S L+YL   P D +K + S +       +  AI+ +
Sbjct: 748 TVKIMSRLREQGITISIDDFGTGYSSLNYLKRFPVDVLKIDKSFIDDMVKRREDAAIVAT 807

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           II +A ++   ++A+ +     +K L    C+ IQ  + + PL        +  R
Sbjct: 808 IIGIAHHMHMKVVAEGVETAEQMKLLMEGDCEEIQGFYFSRPLPPEEFESYITGR 862


>gi|120596930|ref|YP_961504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. W3-18-1]
 gi|120557023|gb|ABM22950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella sp. W3-18-1]
          Length = 1216

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 164/607 (27%), Positives = 281/607 (46%), Gaps = 22/607 (3%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               L  +    A+     L+    G  ++  ++      +   +     +     SG+ +
Sbjct: 620  KHYLHKNGQSVAVRLNGALVTGANGEQLVLFIVEDITEQERTVARVNLLAQVFQQSGEGI 679

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY------IHINDRDNFRTILDSFV 472
               D     V      + I G +   + G    +L        I        R  L+   
Sbjct: 680  TIIDANDIIVDVNTAFSQITGYSREDIIGKNCRFLEAKRTDKSIDPQ----VRAALEQ-- 733

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                G  Q E   R  D       + +  + + +G +  YIG   DI+E+K S E I   
Sbjct: 734  ---TGFWQGEVWDRHKDGYDFPKWLMMSVVRDESGAVSHYIGSFTDISERKMSEERIHFL 790

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D+LT +PNR S    L  +   +    + +  VM ID+D +K IND LG  VGD +L
Sbjct: 791  AHHDSLTLLPNRLSLQSSLEIVFGEALASQS-QIAVMFIDMDHFKNINDTLGHHVGDQLL 849

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + RR+  ++   DI+ARL G+ F ++L S+ N  ++A  A A+R  ++    +    +
Sbjct: 850  LEVARRLKNIVDNNDIVARLGGDEFVVVL-SDTNHDEVASLAEALRSGLSQTYIIDNNSL 908

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
              + SIG + + +   T   ++KNA++AMY AK  G N+ + F  +     ++R  I+  
Sbjct: 909  HSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLITERQHIETG 968

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L   + N EL L Y P I +   ++V +EAL++W HP++G IS   F+ IAEE+ MI  I
Sbjct: 969  LRQVLANEELQLHYQPQIDIRTGQVVSVEALVRWQHPEFGLISPDRFISIAEEIDMIIPI 1028

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++LE     + +WR       + + +N+++  L  + +   +  ++ K       ++L
Sbjct: 1029 GQWVLETAMAQLAAWRAA-GATRLRMAVNLSAHQLRKDTIVADITNVLLKHQLGKGALEL 1087

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ESV M  PE++  LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 1088 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1147

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    AI  + I M+  +  T++A+ +  E  +  L+ MGCD +Q  + + PL    
Sbjct: 1148 IETDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLPAEE 1207

Query: 949  ILKLLKE 955
              + ++ 
Sbjct: 1208 CFRFIQR 1214



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 7/153 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGL 440
              + + +  +  F   +    +R       +     +   D     V        I G 
Sbjct: 522 TMALSKEIARSQAFQATLVESEQRYRNLFDKAPVGHVLKQVD-NGRFVAINQAFTDITGY 580

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   +   +  W   +               +   R    Y+      + Q   + +   
Sbjct: 581 SLDEL-NQLDPWE--LTPKRYQLSEAEQLERLKQTRRYGPYQKHYLHKNGQSVAVRLNGA 637

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ +NG+ L  + I  DITEQ++++  +   A
Sbjct: 638 LVTGANGEQL-VLFIVEDITEQERTVARVNLLA 669


>gi|39997606|ref|NP_953557.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39984498|gb|AAR35884.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
          Length = 873

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 148/596 (24%), Positives = 270/596 (45%), Gaps = 20/596 (3%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VR 425
           +   L    V+ V       +          QG     ER  L V  +   +   +    
Sbjct: 281 VTYFLTWFAVVGVCFAFIINLFWRRLLESLQQG-RRSEERNRLVVERTNQAILLLEPGAG 339

Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
             +   P    +LG +   + G  I   L            + L+  +   R     E  
Sbjct: 340 TIIDANPATCVLLGFSRNELTGADIHALLSG--P--VQEVDSELERCLRETR-----ELS 390

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +   D     +      + + +   L    + +DIT++++  E +L  A  D LTG+PNR
Sbjct: 391 LCHRDGAELVVEAMATQVPHGDDQALCL--MFHDITDRRRFQEELLHQATHDTLTGLPNR 448

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               DRL   +  +     +   +++ D+D +K +ND LG   GD +L S+  RI   ++
Sbjct: 449 SLLEDRLNQAVAGARRRGQM-VALLMFDLDNFKVVNDTLGHTAGDQLLRSVAARIRSFVR 507

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D  ARL G+ F I+L +          A + R  +AMP  L  REI +TAS+G + + 
Sbjct: 508 NCDTFARLGGDEFVIVLTNLTRMDDAVTVAESFRNLLAMPFFLGGREIFITASMGISLFP 567

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYL 722
               T   ++K A+ AMYH K  G N  + F   ++   + R+ I+  L  A+E  E+ L
Sbjct: 568 DDGDTMEALIKKADTAMYHIKESGRNSFQFFAEEMNQKVNARLTIETGLRRALEKGEMLL 627

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +      +VG+EAL++W+ P  G IS ++F+ IAE+  +I  I  ++L       
Sbjct: 628 HYQPRLEPGTGAVVGMEALVRWNSPDMGLISPADFIPIAEDSGLIVEIGDWVLATACCQA 687

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           + W    +   + + +NI+++  + ++  + +  +I ++  SP  ++L  +E+ +  N +
Sbjct: 688 LEWHRMGHD-SLRVSVNISARQFVGHDFVDRVVRIIEQSGLSPHFVELELTETALTHNVD 746

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +  ++ RLR+ GI++++DDFGT  S L+YL   P D +K + S +       +  AI+ 
Sbjct: 747 ETVKIMNRLRERGITISIDDFGTGYSSLNYLKRFPVDVLKIDKSFIDDMVKRREDAAIVA 806

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +II +A ++   ++A+ +     +K L    C+ IQ  + + PL      + +  R
Sbjct: 807 TIIGIAHHMHMKVVAEGVETAEQMKLLMEGNCEEIQGFYFSRPLPPEEFERYIAGR 862


>gi|56477015|ref|YP_158604.1| hypothetical protein ebA2811 [Aromatoleum aromaticum EbN1]
 gi|56313058|emb|CAI07703.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 813

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 151/576 (26%), Positives = 264/576 (45%), Gaps = 27/576 (4%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP------- 448
               D ER  LA      S + +   D+    V+  P    I G+A+ +  G        
Sbjct: 241 ARKRDKERLQLADKVFENSREAIVITDLGHRIVSVNPAYTEITGIAATAAQGTCFRPGSD 300

Query: 449 ----IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                         + R  +       +    G    E        Q +   + I  + +
Sbjct: 301 DGDSGEEGEGAGGPDSRTVW------AIVGEHGSWSGETTGVRCGGQRYPRTLMINGVRD 354

Query: 505 SN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               +I  +I I +DIT +K++   I   A+ D LTG+ NR S   RL   +  +  +  
Sbjct: 355 PETREITHFIAIFSDITARKRAEADIQHLAYHDTLTGLANRFSLTARLQLSVAEARRNGQ 414

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  VM +D+D++K IND LG  VGD++L  + RR+ + ++  D +ARL G+ F ++L  
Sbjct: 415 -RLAVMFLDLDRFKHINDSLGHPVGDELLKQVARRLRDAVRETDTVARLGGDEFVVVLQG 473

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +  +   A  +   ++ P  +   E+  TASIG + +       + +++NA+ AMYH
Sbjct: 474 IGGAHDVTHVAAKLLAQLSAPYCVDTTELHTTASIGISLFPDDSADPAALMRNADTAMYH 533

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G    + +     R  + R+ ++  L  AV   E  L Y P        + GLEAL
Sbjct: 534 AKAAGRAKFQFYTDEMNRAATARLDLERKLRGAVARGEFELWYQPQFDSRHGHLTGLEAL 593

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G I+   F+ +AEE  +I  I  ++L    R    W D    P + I +N++
Sbjct: 594 VRWRHPQDGLIAPLRFIPLAEETGVIVEIGTWVLREACRQARQWLDAGL-PELRISVNLS 652

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + L +  L + +   ++ +   P  ++L  +ES VM NP+ +  LL  L+ +G+ + +D
Sbjct: 653 VRQLREKCLVDTVWTTLAASGLRPGLLELEITESAVMDNPDEAVALLQALKNLGVRIAID 712

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P D +K + S ++          I+ + + +A N+  ++IA+ + 
Sbjct: 713 DFGTGHSSLSYLKLFPLDHLKIDRSFISDIEHDANDTMIVAAAVSLAHNLGLSVIAEGVE 772

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + +  L  +GCD +Q  H + P+  + +  LL+ 
Sbjct: 773 SAVQVARLRELGCDELQGFHFSRPVTADVVENLLRS 808



 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 19/141 (13%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457
            +          +      V   D     V    +   +L        G + +       
Sbjct: 120 EVVQRAAMLETILDSIPCAVSLVDRELQLVACNEEFKRLLDFPPHLFAGSLPSLETLFRY 179

Query: 458 --------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                     D D     L +   +        F  R  D     ++I+ RP+       
Sbjct: 180 NAARGEYGPGDPDEVVASLLARALHPAPHS---FERRRRDGTV--LLIQGRPLPQG---- 230

Query: 510 LRYIGIANDITEQKKSLEGIL 530
             ++    DIT +K+  E + 
Sbjct: 231 -GFVTTYTDITARKRDKERLQ 250


>gi|56476521|ref|YP_158110.1| hypothetical protein ebA1965 [Aromatoleum aromaticum EbN1]
 gi|56312564|emb|CAI07209.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 1020

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 143/608 (23%), Positives = 277/608 (45%), Gaps = 9/608 (1%)

Query: 348  FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
             +         T  +    ++P       + V+ +  +     LA    S  +    ER 
Sbjct: 409  LVMVPVGGAIPTGAVGAYWLEPHRSDDEEVAVLEVLASAAGTALARQLASDRLRQSEERF 468

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             + V  +   VW+ D     V  +P  +   G     M G    WL  IH +DR      
Sbjct: 469  RVLVEETAQAVWEGDAAGALVVHSPSWSAYTGQTFEEMAG--FGWLDAIHPDDRARVERE 526

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              + V  RR     E R+R    ++ W  +R  P+  ++G++ +++G+  DIT++K++ +
Sbjct: 527  WRAAVAGRRV-FDTELRLRHYLGEWRWANVRAAPLVGADGEVEKWVGMNIDITDRKEAEQ 585

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                 A  D+LT +PNR+   +    +L  +    + +   + ID++++K +ND+ G   
Sbjct: 586  RAHEAALHDSLTALPNRRLIFEYAEHLLAAAGR-KHSQGAFLFIDLNRFKPVNDLYGHEA 644

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +L  +  R+   ++  DI+ RL G+ F ++L     + +  + A  + +S++ P  +
Sbjct: 645  GDRLLQEVACRLKAGVRKEDIIGRLGGDEFIVLLPYLEQTQEAMNIAQYIVESVSQPFMI 704

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705
             + E++V+ SIG + +    +T   +++ A+LAMY AKH  RG   V    +        
Sbjct: 705  RDAEVSVSPSIGISLFPQHGMTVDGLIRAADLAMYQAKHCSRGAYCVYEPNLEHRDDVST 764

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             ++  L  A+  +   L Y P+I L    + G EAL+++       +    F+ +AE   
Sbjct: 765  SVEGRLKQALAKNTFALHYQPVIDLRTGAVRGAEALLRFAGEDCEALGPGLFIPVAESSG 824

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I AI  ++     R  I+W  +    P+ I IN++          + +  ++     +P
Sbjct: 825  LIGAIGEWVTAEACRQHIAWAAEGL-EPVPIAINVSPVQFRQRRFVQRLADILRDGGMNP 883

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            + + L  +ES VM N + +  +L  +R +G+ + LD FGT CS L++LG +P D +K + 
Sbjct: 884  ASLLLEITESAVMDNADDAAGILAAVRALGVKVVLDGFGTGCSSLAHLGSLPLDKLKIDR 943

Query: 886  SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S + G  +     A++ ++I + + +   ++A+ I     +  L   GCD  Q   +  P
Sbjct: 944  SFVEGIGQDSTSRAVVEAVIALGRTLGLEVVAEGIESGDVLAYLEAHGCDQGQGYFLGRP 1003

Query: 944  LGFNSILK 951
            L  +   +
Sbjct: 1004 LPRDEFAR 1011


>gi|149182402|ref|ZP_01860878.1| hypothetical protein BSG1_09378 [Bacillus sp. SG-1]
 gi|148849865|gb|EDL64039.1| hypothetical protein BSG1_09378 [Bacillus sp. SG-1]
          Length = 975

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 259/566 (45%), Gaps = 11/566 (1%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              S+ I    E        + D V+  D+     +  P      G +   + G +   +
Sbjct: 408 RKLSENIQISEEYYRSLFENNTDFVYSTDLEGRFNSVNPTFLKTFGYSEEELIGKLS--I 465

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            +I   D    +      +  +      E  + +   +     I+  P++  +G  +   
Sbjct: 466 SFIFEEDIPRIKRHFYRTLSGKEQFY--EIWIPSKSGEVQLFHIKNIPIT-VDGHCVGLF 522

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI  +ITEQKK+ E I   A+ D  TG+PNR  F +     +  +      R  V+ +DI
Sbjct: 523 GIGRNITEQKKTEEKITYLAYFDAETGLPNRIKFRELAEEFISRAKKKKR-RIGVLFLDI 581

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG + GD +L+ L  RI   L     L R   ++F I++     + K+   
Sbjct: 582 DRFKLINDTLGHSAGDQILIELAERIKNALPKGAYLGRFGSDKFTILISKNVTNEKLKQV 641

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + ++I MPI    +E  + ASIG   +       +++LKNA+ A+  AK  GG+ + 
Sbjct: 642 AELIAENIQMPIIQGNQEFYIKASIGVGVYPDHGTDLADLLKNADTALNWAKSNGGDQIV 701

Query: 694 SFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +           V ++  L  A+E  ELY+VY PI+ L D+ ++G EAL++W+HP  G 
Sbjct: 702 FYTNEMNIMAMEKVKMESYLRKALEREELYIVYQPIVELNDKRVIGAEALLRWNHPYLGV 761

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  EF+ +AEE  +I +I  ++L    +    W+++   P  +I +N+++         
Sbjct: 762 VSPMEFIPLAEETGLIGSIGNWVLTEACKQAKEWQEK-GFPDFYISVNVSANQFQQPSFT 820

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +  S   + L  +ESV++ +   +   +  L  +G+ + +DDFGT  S L 
Sbjct: 821 NEINHALKTSGLSAESLCLELTESVMIQHSGHTIDRMEELAALGVKIAIDDFGTGYSSLG 880

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL ++P   +K + S +    E     AI++++  M K +   ++ + I     +  L+ 
Sbjct: 881 YLKHLPLHVLKIDKSFVQNIEESSPDYAIVQAVSMMGKGLGMQVVVEGIETSEQMVLLSH 940

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           + CD  Q   ++ P+  + + K ++ 
Sbjct: 941 LNCDLGQGYFISRPVFPDEMEKWMRN 966


>gi|56477116|ref|YP_158705.1| diguanylate cyclase/phosphodiesterase domain-containing protein
            [Aromatoleum aromaticum EbN1]
 gi|56313159|emb|CAI07804.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
            [Aromatoleum aromaticum EbN1]
          Length = 1121

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 146/552 (26%), Positives = 266/552 (48%), Gaps = 10/552 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +  + D V   D+ +  V+       I G +     G   + L     +D   F   L 
Sbjct: 573  VIESTRDGVMVTDLSQRIVSVNRAWCEITGFSEEEALGKTPSMLKSGLQDD--AFYRQLW 630

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              V +  G  Q E   R  + + +   + +  + + +   +RY+G+  DI++ K+S   +
Sbjct: 631  DSVAH-TGHWQGEIWNRRKNGELYPQWLSVSTVYDEDHKPVRYVGVMTDISQLKQSQAQL 689

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LT +PNR     RL   ++ ++    L   V+ ID+D++K IND LG A GD
Sbjct: 690  ERLAHYDPLTNLPNRLLVQSRLEHAIEQASRQQ-LGLGVLFIDLDRFKNINDSLGHATGD 748

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-L 648
            ++LV+++ R+   L+  D LAR  G+ F +I+ +     + A  A  +   +  P +L  
Sbjct: 749  ELLVAISWRLRTRLRPEDTLARWGGDEFLVIIDNLRKPDESASVAQNLIDLMGEPFSLPG 808

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706
               + V AS+G + +     +++E++++A+ A+  AK +G N    F    S      V 
Sbjct: 809  GEVVYVGASVGISLYPQDGTSAAELIQHADAALNQAKAQGRNTFRFFTEALSQAAQRHVD 868

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            ++  L +A+E     + Y P I +    + G EAL++W     G +S + F+  AEE  +
Sbjct: 869  LERRLRVALEQQAFVVHYQPQIDITTGRVTGCEALVRWQATDEGAVSPNRFIPFAEESGL 928

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  +  ++LE   R   +WRD     P+ + +N++++ L   EL + + A++ +T   P 
Sbjct: 929  IVPLGEWVLETACRQARTWRDAGLA-PLRVGVNLSARQLWQAELPDRIAAILQRTGLPPE 987

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +ES++MG+  ++   LG L+ +G+ L +DDFGT  S L+YL   P + +K +  
Sbjct: 988  CLELELTESMIMGHEAQAEQRLGLLKSMGLGLAIDDFGTGYSSLAYLKNFPIEMLKIDQG 1047

Query: 887  LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +    + R    I   II +A+ +   ++A+ +  +  +  LT  GCD  Q    + PL
Sbjct: 1048 FVRHIPDDRKDMEITAGIIALARKLNIKVLAEGVETDAQLAFLTEQGCDAYQGYLFSRPL 1107

Query: 945  GFNSILKLLKER 956
                  KLL +R
Sbjct: 1108 PAEDFAKLLAQR 1119



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 99/311 (31%), Gaps = 23/311 (7%)

Query: 273 LHWNRWHAKVGYIT--FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
           L   R H  + +           +    ++     +  +     L           +   
Sbjct: 145 LEALRTHRHLAHYAPHIHLTIATSAAEVLARLPAALDTASDFDVLLFDHAPGDLDGLELA 204

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                   L +P  ++       L     +   +D I         L   L        +
Sbjct: 205 RIVRHERRLALPLVLVSAHGGEDLVARTMELGVDDFIAKYPGYLHALPATLEKVRERAEL 264

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMH 446
           +        + +     +  +  S  +++   I  D        + +I +ILG++S    
Sbjct: 265 IRERA---ELRATTAHLTHLLSASPTVLYTLQIRDDGKPQTSWVSDNIVSILGVSSADAL 321

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                WL ++H ++R  +       +  R G   +E+R+     Q  W+    R + + +
Sbjct: 322 -SPGWWLAHVHPDERAAWIATQTVLL--REGHRSHEYRLLGGKEQVTWIRDDARVLRDDS 378

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD----- 561
           G  +  +G   +IT QK++       +       + NR    D L  ILD  A       
Sbjct: 379 GTAVEVVGTWTEITAQKQTELLQAARSA------VLNRLIGDDPLPVILDDVARRLESLA 432

Query: 562 DNLRPTVMVID 572
             +R +++++D
Sbjct: 433 PEMRVSILLLD 443


>gi|319650647|ref|ZP_08004787.1| hypothetical protein HMPREF1013_01392 [Bacillus sp. 2_A_57_CT2]
 gi|317397828|gb|EFV78526.1| hypothetical protein HMPREF1013_01392 [Bacillus sp. 2_A_57_CT2]
          Length = 861

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 271/575 (47%), Gaps = 11/575 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442
              IQ +       + ++ +  +           ++  D++  +V   +  +  I G  +
Sbjct: 138 IATIQDITEKRRMEEKLYENERKIGQIYENLDVGIYSADLIERKVFHFSRGVEGIFGYTA 197

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +      W   IH +D  +      + +  +   ++ ++R+     +  W+     P 
Sbjct: 198 DELIDNFDLWDEVIHPDDLQSLEANRVNLIHGK--SIRCQYRIFNKSGELRWVNDHSIPY 255

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G+++R  G   DITEQK+  E +   AF D+LT +PNR+ F  +L +++     ++
Sbjct: 256 LDERGELIRVDGFVTDITEQKRLEEKMRHMAFYDHLTDLPNRRYFDQKLQSLV---KDNE 312

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             R  V+  D+++ K+IND  G + GD++L  + +RI E L      AR+SG++F +I  
Sbjct: 313 KHRFAVLFFDLERLKQINDTFGHSAGDELLRLVAKRIREKLNVTFFSARISGDQFAVIKE 372

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                   A     + +  + P ++   E+ +T SIG + + ++ +++ EM++N E ++Y
Sbjct: 373 HIQEVEDPAQLGDCIYQIFSEPFHIESFELKITPSIGISIYPNNGVSAEEMVRNTETSLY 432

Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK +G N  + +   +         +++D+  A+ N E  L Y P +     +I+  EA
Sbjct: 433 HAKQKGKNRFQVYHPSMDIESYKLFTLEQDMRKALVNDEFILEYQPRVDTKTGKILSAEA 492

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+WG +S  EF+ +AEE   I  I  +++ ++ R +  W+++     + I +NI
Sbjct: 493 LLRWSHPEWGRVSPLEFIPVAEESGFIINIGEYVIRKVCRQLFDWKEKGLSI-VPISVNI 551

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +    L N L   ++  + +       I++  +ES ++   E    +L  L  +G+ + L
Sbjct: 552 SPLSFLKNSLVSMIKEALDEYHLEAELIEIELTESSLINYSENVISVLKELGSMGVKIAL 611

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S ++ L    FD +K + + +    +  +   I  ++I +A  +   ++A+ +
Sbjct: 612 DDFGTGYSSITQLKNYKFDVLKIDKTFIQAMDKTAEDAIITANLIQLAHGLNMKVVAEGV 671

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                   L +  CD IQ    + P+  +S  + L
Sbjct: 672 ETFEQFYSLRKNECDQIQGYLFSKPIPPSSFEQKL 706



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 3/123 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFR 465
            + A   +     ++D+  DR   +  +  I GL +        R +L Y+H +DR  F 
Sbjct: 33  LNQAQKIANIGSLEYDVENDRGFWSDQLFRIFGLKSQKGFFPDYRMYLSYLHPDDRPAFE 92

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                 +      +    R+   D +  ++  R    +  +G   + I    DITE+++ 
Sbjct: 93  DQFQKLLKEMN-SVDLICRIIRQDGEERYIHQRANYFAEDSGSP-KIIATIQDITEKRRM 150

Query: 526 LEG 528
            E 
Sbjct: 151 EEK 153


>gi|78222207|ref|YP_383954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
 gi|78193462|gb|ABB31229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
          Length = 739

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 165/743 (22%), Positives = 319/743 (42%), Gaps = 25/743 (3%)

Query: 228 VLGYISIDFGFLSK----LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           +  Y  +  GF       L   PS  +L+  A + +   + L+ F       +R      
Sbjct: 1   MGVYCVMAGGFFYFSRFGLFLSPSQHILLLAALAAVVCYNLLLQFSR-----DRLARGFR 55

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVL-YYTYFIIYHGMKGYERAVLLIP 342
            + F  I    +L  +  +     AS        + +           +        L+ 
Sbjct: 56  LLNFLQIILDLVLVSVLIHTSGGAASWFWPAYLFVTIEASFLIEDRREVWLVGGLGGLLY 115

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA-----TGYFS 397
             +L+      +       + +++    L   L  + + +    +  + +         +
Sbjct: 116 GAVLVLEHLNIVPYVRMPFVGSELHHDHLYLLLTWLWVSLLNAAMAAIASYFMTVIRRET 175

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             +    ER +  +  + D++         +         LG ++         +   +H
Sbjct: 176 DAVREGEERLATFLDTANDLIHSVTPDGRLLYVNEAWQRTLGYSAEEADAVP--FFDILH 233

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            + R+     L   V         E    A D +   +   +      + +      I  
Sbjct: 234 PDSREQCCAELQRVVSGDALS-PMEAVFTAKDGRSVIVEGSLSCAHGGD-ESSVIWSICR 291

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+K + E +   A  D LTG+PNR  F+DRL     L+      +  V+ +D+D++K
Sbjct: 292 DITERKHAEEQLYRLAHHDTLTGLPNRILFMDRLQQAKALANRY-RYQVAVLFLDLDRFK 350

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG  VGD +L  +  RI   ++  D +AR+ G+ F IIL++ +    +      +
Sbjct: 351 IINDTLGHPVGDHLLQQVAHRIAGCVREVDTVARIGGDEFTIILVNVDTVEDVKRMGQKI 410

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            K++A P N+   E+ VTASIG + + S      +++K A++AMY  K  G N+V+ +  
Sbjct: 411 LKTLAAPFNIDTHELFVTASIGISLFPSDGDNLDQLVKKADIAMYCVKGEGRNNVQFYSP 470

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +   R++++  L  A++N E  + Y P + ++ + I  +EALI+WDHP  G +S  
Sbjct: 471 QMDANADKRLLLETSLRKALDNREFRVYYQPKVDIVSKRITAMEALIRWDHPILGLVSPG 530

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  +I  I  ++L         W  Q  +PP+ + +N++        L E ++
Sbjct: 531 EFIPLAEETGLIIPIGEWVLRAACFQNCEWVRQ-GIPPMRVAVNLSGYQFQQKNLLETIR 589

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  +   ++L  +ESV+M NP+ +  +L +LR +G+ +++DDFG   S L++L  
Sbjct: 590 GILDETGLTADLLELEITESVIMQNPDFAVSVLNQLRDLGVHISIDDFGIGYSSLAHLKR 649

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              +T+K + S +          AI  +II M  ++   +IA+ +  E  +  L+   CD
Sbjct: 650 FSVNTLKIDKSFVRDVEINSADAAIATAIIAMGNSLNLKVIAEGVETEGQLSFLSDNKCD 709

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            +Q    ++P+    + + ++E 
Sbjct: 710 EVQGYLFSTPMPPEKVAEFMREH 732


>gi|330966724|gb|EGH66984.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. actinidiae str. M302091]
          Length = 1243

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 263/563 (46%), Gaps = 13/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 675  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 733

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 734  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 792  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 851  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 910

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ 
Sbjct: 911  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNNF 970

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G  AL++W HP+ G
Sbjct: 971  QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAGALLRWRHPRRG 1030

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1031 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1089

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1090 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1149

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L 
Sbjct: 1150 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLR 1209

Query: 929  RMGCDYIQDSHVASPLGFNSILK 951
              GCD +Q      P+  +    
Sbjct: 1210 EHGCDEVQGFLFGRPMPPSQFEA 1232



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 526 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDTHLTVNYVSPSVERALGYSAD 585

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 586 WI--TRNGWSAAIANPQQLTGFDALISRISKVLNKPQELARLRDEVTTRMFLFDCLRADG 643

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 644 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 687



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +H     +    +H  D  +++ + L          LQ
Sbjct: 433 LSQRMIYSNHHFGHTLGYNKFELHAMGEFFWEILLHPEDAKSYQDMRLRQRHHGHNELLQ 492

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 493 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 552

Query: 533 A 533
           A
Sbjct: 553 A 553


>gi|226311854|ref|YP_002771748.1| signaling protein [Brevibacillus brevis NBRC 100599]
 gi|226094802|dbj|BAH43244.1| probable signaling protein [Brevibacillus brevis NBRC 100599]
          Length = 815

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 155/572 (27%), Positives = 275/572 (48%), Gaps = 23/572 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVW--DWDIVRDRVT--TTPDIATILGLASGS 444
            + A    ++ + +D  R    V    + V+    D   +         IA  LGL S  
Sbjct: 250 RIEAETALAEALQNDFRR---TVQNLQNCVFKIVTDQRGNITYTLCEGKIAEELGLTSER 306

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           M                +   +               E ++   D       I + P+  
Sbjct: 307 MLRKTSY--EIFPYEVAEQMESYFRRAFAGESVTF--ELKLSGND-----YYITLSPI-E 356

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            NG+I+  +G   DITE+KK+ E I   A  D+LT +PNR  F ++L   +  +   D  
Sbjct: 357 ENGEIVEMVGSMIDITERKKAEETIRYMAHYDSLTNLPNRTLFHEKLAEAMLKAKQKDE- 415

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  VM ID+D++K IND LG ++GD +L ++  R+   L+  D ++RL G+ F I L   
Sbjct: 416 KIGVMFIDLDRFKNINDTLGHSIGDVLLQAVANRLICCLRKEDSVSRLGGDEFAIFLTGV 475

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +     + A  +  S++  I L   EI +T SIG + +         +LK+A+ AMY A
Sbjct: 476 THRE-AGEIAQRIITSMSESITLDHIEIFITPSIGISMYPDDGDDIEALLKHADAAMYLA 534

Query: 685 KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N+ + F     +    ++ ++ +L  A++  +  L Y P I L   +I+G+EALI
Sbjct: 535 KEQGKNNYQFFSEELHQVLAKKLQLERELRKALDEKQFTLHYQPKIHLQTGQIIGMEALI 594

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +WDHP  G I   +F+ IAEE  +I  +  +++    +   +W++      + + +NI+ 
Sbjct: 595 RWDHPDLGLIPPIQFIPIAEETGLIVPLGEWVMRTACQQTKAWQEA-GFTQLAVAVNISL 653

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +  + N L E + +++ +T  +P  ++L  +ES+ + N + +  +L RL+ +G+S+++DD
Sbjct: 654 RQFMQNNLIEMITSILEETGLAPQYLELEITESMAL-NVDYTIRILNRLKALGVSISIDD 712

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           FGT  S LSYL   P D +K + S +     +  AI+++II MA N++  +IA+ +    
Sbjct: 713 FGTGYSSLSYLSQFPIDRLKIDQSFLRNLNPQNQAIIKTIIHMAHNMKIAVIAEGVETHE 772

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  L    C+ +Q    + PL    I   L+
Sbjct: 773 HVDFLKEQLCNEVQGYFYSKPLPTKEIDSFLQ 804



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
           A+  S  IV   D              I       + G     +    H   +  F+ + 
Sbjct: 142 ALDESS-IVAITDDKGVITYVNDKFCEISRYEVDELVGNTHRVINSRYHS--KSFFKLMW 198

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++    R    + E + RA D   +WM   I P  +  G   +Y+ I  DIT++ ++ 
Sbjct: 199 ETIKQGR--VWKGEVKNRAKDGTEYWMNTTIVPFLDDRGVPYQYVSIRTDITDRIEAE 254



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTIL 468
           A+  S  ++   D          +   +       + G   N +    H   R+ F+++ 
Sbjct: 14  ALEESS-VISITDEKGIITYVNHNFCQLSKFNREELIGKSHNIVDSGFHP--RNYFKSLW 70

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           D+    +    + E + R  D   +W+ + + P  N +G + +Y+ I  DIT++K   E
Sbjct: 71  DTISRGK--VWKGEMKNRGKDGTEYWLSMTLVPFMNDSGFLYQYVAIGTDITKRKLMEE 127


>gi|257094976|ref|YP_003168617.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257047500|gb|ACV36688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1399

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 144/552 (26%), Positives = 254/552 (46%), Gaps = 13/552 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
                 G+ +   D   + V        I G +   + G   + L    H  D+  ++++ 
Sbjct: 855  VFEQGGEGIAITDAACNIVMINQAFTRITGYSEVEVLGRNPSLLASGRH--DQAFYQSMW 912

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            +S      G  Q E   R  D   +   + I  + + +G    YIG   DIT+ K++   
Sbjct: 913  ESI--ESLGHWQGEIWNRRKDGSVYPEWLLISRV-DGDGAPTHYIGTFIDITQHKEAEAS 969

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            I   A  D LTG+PNR    +R+   L  +         +M +D+D++K +ND LG  VG
Sbjct: 970  IQRLAHFDALTGLPNRSLLEERVRHDLARAHR-GREALALMFVDLDRFKNVNDSLGHRVG 1028

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D +L+ +  R+   ++  D ++RL G+ F ++L S  ++   A  A  + + +A    + 
Sbjct: 1029 DALLIQVAERLRRAVRDEDTVSRLGGDEFIVVLPS-TDADGAAHVAAKLLEVMAPAYRIE 1087

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
            + E+T + S G A + +   +   +  +A+ AMY AK  G N    F           + 
Sbjct: 1088 QHELTCSLSAGIAMYPADGESFEALSMSADTAMYRAKQSGRNAYCFFTAEMQERSARNLQ 1147

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            I+ DL  A+EN EL L Y P   L D  +VG EAL++W HP+ G +S  EF+ IAEE  +
Sbjct: 1148 IENDLRRALENGELRLHYQPQFTLADRRLVGAEALLRWQHPQLGMVSPVEFIPIAEECGL 1207

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  I  ++L      +  W+ +   PP+ + +N+++       L + +  ++     +  
Sbjct: 1208 ILPIGEWVLRAAVSQLRVWQQEGL-PPMTVAVNLSAVQFRQASLTDVVSRILDAEGLAAQ 1266

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +ESV M NP  +   + +LR +G+ +++DDFGT  S +SYL       +K + S
Sbjct: 1267 FLELELTESVAMDNPLAAIATMDKLRALGVRMSIDDFGTGYSSMSYLKRFRVHKLKIDRS 1326

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +       +  AI+ + I +A+++    IA+ +  E  +  L   GCD  Q    + PL
Sbjct: 1327 FVADLAADPEDEAIVTATISLARDLGLQTIAEGVESEAQLAFLRAKGCDEAQGYLFSRPL 1386

Query: 945  GFNSILKLLKER 956
                    ++  
Sbjct: 1387 APAQFAAFVRAH 1398



 Score = 89.6 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 1/138 (0%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                  R  +A   +  + W+ D++ D++     +  +LGL  G   G     +  +H 
Sbjct: 403 ERKRAEARLRMATEATQLVFWELDLLSDQLRYDTSMLQVLGLDHGEDPGSTGALMELVHP 462

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIAN 517
           + R        + +        +E ++     +  W+  R R    ++ G  +  +G A 
Sbjct: 463 DHRAALTESFRAAMASAEPVFSFEHQIVTHSGEGVWLQTRGRVAQRDAAGRAVLAVGTAM 522

Query: 518 DITEQKKSLEGILCNAFQ 535
           +IT++K++   +L  + Q
Sbjct: 523 NITDRKRAEAALLRRSEQ 540



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 14/148 (9%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-- 447
           +       Q +      ++  +  +   +   D         P    I G A+  + G  
Sbjct: 696 LAERRQVEQALRESEALKASVLASAACGIVATDPQGLITVFNPGAEAIFGYAAHEVVGKV 755

Query: 448 PIRNWLPY---------IHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWM 495
               W            +  +         D+ V   R   Q + R       D +   +
Sbjct: 756 TPTLWHDAEEIAAAAVALSRDLGCRVEAGFDALVARARCSGQVDERETAGVRKDGRRITI 815

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQK 523
            + +  M ++ G +  Y+G   DIT QK
Sbjct: 816 RLAVTVMRDAQGALAGYLGTIVDITAQK 843



 Score = 45.3 bits (106), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 53/164 (32%), Gaps = 9/164 (5%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
              +G  +L   L+G  ++  V+      +   +  E     +    D +++  +     
Sbjct: 258 TRYLGYALLAGSLVGALLLIWVVTLRRLVRQRTATLE---ATLDAIPDPLFELGLDGRYH 314

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRA 487
                 A +L     ++ G +      +         + L            Q+E  +R 
Sbjct: 315 DCHTPRADLLAAPPDALIGRLLT--DVLPAAAAATCLSALREAQATGHSAGQQFELPLR- 371

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                 W  + +       G   R++ +A DI+E+K++   +  
Sbjct: 372 --GGNFWFELSVARKPTGVGREPRFVVLARDISERKRAEARLRM 413


>gi|118578941|ref|YP_900191.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pelobacter
           propionicus DSM 2379]
 gi|118501651|gb|ABK98133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 705

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 154/597 (25%), Positives = 277/597 (46%), Gaps = 8/597 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           + +++       +L V++     ++           +     R + A   +    W+WD+
Sbjct: 108 DYLLKDTSFLDRLLAVVVRALQEVETRERLDRAKHSLRLSEARLARAQKIARLGSWEWDV 167

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYE 482
               +  + ++  I G   G      + W+   IH  D   F+  L + V   +      
Sbjct: 168 RAGEIYWSDELYRIFGFTPGEPKRISKEWIYSLIHPADLPAFKQQLLTSVKTLQ-SFNMI 226

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           +   +       + I+       +G      G   DIT + K+   I      D LTG+P
Sbjct: 227 YHTTSRSGGELVVNIQGEVERGEDGRAWLISGTVLDITARIKAESEIHHLINYDTLTGLP 286

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DRL   +  +A D ++   V+ +D+D++K +ND LG   GD +L  + RR+   
Sbjct: 287 NRSLLHDRLRQAIAQAAQDRHM-VWVLCLDLDRFKGVNDTLGHRSGDKLLQEVARRLAAC 345

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D LARL G+ F ++L    +    +  A  +   IA PI + + E+  TASIG A+
Sbjct: 346 VRESDTLARLGGDEFVVVLDGVVSEKGASIVAKKILTLIAEPIPIDDHELYTTASIGIAA 405

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720
           +         +LK+A+LAMY AK    N+   F         +R+M++  +  A+E  E 
Sbjct: 406 YPMDGEDGHTLLKHADLAMYKAKELDRNNFHFFSHDMNIKVMERMMLENSMRKALERDEF 465

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +LVY P +      I G+EAL++W+HP  G ++   F+ +AEE   I  +  ++L    R
Sbjct: 466 FLVYQPQVDARSGRITGVEALLRWNHPDMGLLTPDRFIYLAEETGFIVPLGEWVLMTACR 525

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
              +W+     PP+ + +N++ K    + L E + A++ +T   P  ++L  +ES +M N
Sbjct: 526 QNRAWQK-LGFPPLRVAVNLSGKQFGQHRLDEMISAILLETGLEPEWLELEITESAIMRN 584

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            +++  +L  L++ GISL +DDFGT  S LSYL + P   +K + + +          AI
Sbjct: 585 ADQNIAILRSLKEKGISLAIDDFGTGYSSLSYLKHFPITRLKIDKTFVQDITTNPDDAAI 644

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              II MA+ ++  +IA+ +     ++ L+   C  +Q    + PL  +  + LL++
Sbjct: 645 AEIIIAMAQTLKLNVIAEGVETRAQMEFLSTHTCFEMQGYLFSRPLTTDKFVYLLRD 701


>gi|302388230|ref|YP_003824052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium saccharolyticum WM1]
 gi|302198858|gb|ADL06429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium saccharolyticum WM1]
          Length = 845

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 144/609 (23%), Positives = 282/609 (46%), Gaps = 7/609 (1%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVL 412
             +     L   I    L    +LI + +G       L       + +    E  +LA+ 
Sbjct: 239 SSINANGALIGFISLLVLFLMGILIYMQMGLFKKDENLQHLASLHKELERLKESYTLALD 298

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D +W+W+++ D + T+     I G A              IH  D    R   D+ +
Sbjct: 299 SANDALWEWNLITDEIITSDKWIDITGNALEGHGISGILQKETIHQEDYPAVRAAFDACL 358

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E+R+R  D+ + W++ R +   +  G   +  G  ++I E+K+    I   
Sbjct: 359 KGETREFNQEYRIRNRDDTYTWVLNRGKVYFDGEGLPGKVAGAVSNIEERKQRESKIEYM 418

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LTG+PN+ +F+  L   L  S  +   R ++++ID+D +K  ND+LG+   D +L
Sbjct: 419 AFYDTLTGLPNKMNFMSTLEETLG-SIENSLCRDSILMIDLDNFKIHNDLLGLDFCDQLL 477

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +  R+  +L   +++AR  G+ F I++    +  ++      +      P  L+E+ +
Sbjct: 478 QQVGDRLTGILGQKNMVARFGGDEFLILIRDCKDMSEVKKLCQNILSIFGAPFVLMEKSV 537

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKED 710
            ++ SIG      +  T++++L+NA+ A+  AK  G N    +             ++  
Sbjct: 538 YLSVSIGVVHCMEAGQTANDVLRNADTALNKAKESGKNQYCIYDAQMHDEIIRKSNVELC 597

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+   +L + Y P   L   +I G+EAL +    + G IS  EF+ +AE   +I  +
Sbjct: 598 IREALAKDDLLIYYQPQQDLFRNKIRGVEALARLHSKELGMISPFEFISVAEYTGLIIPL 657

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+   +   +W D        + +NI+   L +    + ++ ++++T +  ++++L
Sbjct: 658 GSWILKNACKQGKAWIDSGCKFG-KLSVNISVHQLRNENFYDLLKEVLNETQFPVNQLEL 716

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV++   + +  +L +LR +G+S+ LDDFGT  S L+YL  +P D +K + S +  
Sbjct: 717 EITESVLLEFSQNNIEILKKLRSLGVSIALDDFGTGYSSLNYLTVLPIDILKIDKSFLGR 776

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  +E    +++SI  +A  +   ++++ +      + L  MGCDYIQ  + A P    S
Sbjct: 777 ALESETEHQVIKSITELAHGLSLKVVSEGVETAEQKQILKDMGCDYIQGYYFAKPGDAKS 836

Query: 949 ILKLLKERF 957
           + K  +   
Sbjct: 837 VEKWFRREQ 845


>gi|317128931|ref|YP_004095213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473879|gb|ADU30482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 1071

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 270/568 (47%), Gaps = 16/568 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + ++ +     +  S D++   +     +  +P +A +LG     + G        IH N
Sbjct: 21  VQNNVQEFEALLRYSTDVIGIINKDGGIIYQSPALAKVLGYTQNEIKGLNS--FQLIHPN 78

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +    R + D  V  +  ++  E R+R AD  + +  +        +  I   I    DI
Sbjct: 79  ELHTVRNLFDDLVNNKISKVTKEMRLRHADGSWIFCEVTATNHLF-DKKIKGIIVNYRDI 137

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+K   E I    + DNLTG+PN+      L + +  +   +  R  +++ID+D++K I
Sbjct: 138 TERKLYEEEIHQLVYHDNLTGLPNQYMLDSFLESEIYKAK-YECTRLALLIIDLDRFKVI 196

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G  +GD +L  + +R+  ++   D+L R  G+ F I+L S     ++      +  
Sbjct: 197 NDSIGHTIGDQLLKEVGKRLVSIVSKSDLLVRKGGDEFVIVLPSIK-KDQVLKVVDNIIN 255

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P  +   +I  + SIG + +     T   + K+AE AMY AK  G      F  + 
Sbjct: 256 LLTSPFKIKSYDIFTSPSIGVSIFPEDGKTKDLLYKHAEFAMYQAKKSGNGQYHFFSSAE 315

Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           F    +   I+ +L  A+E  +  L Y P I L   E++G+EALI+W+HPKWG IS + F
Sbjct: 316 FNGDMNPYTIEVELRKAIEQKQFTLHYQPRINLSTGELIGVEALIRWEHPKWGLISPASF 375

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I  I  ++LE   +    W+         + +N++ K      L   ++  
Sbjct: 376 IPIAEDSGLIVPIGNWVLEEACKQNKIWQVSG--MSCVVSVNLSPKQFAHTNLASVIKNT 433

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T   P  +++  +ES +  +  R+   L  ++K+GI +++DDFGT  S L YL   P
Sbjct: 434 LFNTGLDPHLLEIEITES-MTADITRTVATLEEIKKLGIQVSIDDFGTGFSSLYYLKKFP 492

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +T+K + S ++   +      I+++II MA+N+   ++A+ I  +  +  L +  C   
Sbjct: 493 VNTLKIDRSFVSELHNNPDEETIVKTIISMARNLNLNVVAEGIETKEQLAFLQQHLCHEG 552

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q    + PL  +    +L+E+FP ++ +
Sbjct: 553 QGFLFSKPLPPS----VLEEKFPTIQKS 576



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 3/136 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    E+  L      D++   ++       +P     +G    ++ G +  
Sbjct: 710 DRKKAEDALQKSEEKYRLIAENMSDLILLLNVEGRVKYVSPSHKKYIGPKYENLLGKLS- 768

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              Y H  D    +  L   +   +   Q EFR       +  +     P+   +G +  
Sbjct: 769 -FEYCHPEDIMKLKENL-VVIMQSKETSQVEFRCWDETRNWRIIEATGTPIIGKDGYVEH 826

Query: 512 YIGIANDITEQKKSLE 527
            + +  DITE++K+ E
Sbjct: 827 IVVVGRDITEKRKTEE 842


>gi|82701959|ref|YP_411525.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410024|gb|ABB74133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 705

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 270/573 (47%), Gaps = 9/573 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             L      +   +   + +  V  S D +   D+     +       + G  +  + G 
Sbjct: 138 WSLRNITERREADAYKAQLAAIVESSNDAIIVQDLNGIITSWNAGAEGLFGYRASEVIGS 197

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L  I  + R+    I+      RR       R      +   + + I  M +  G+
Sbjct: 198 SVEIL--IPPDLREEEGDIMCLIKSGRRADHFETVRW-GKGRKPIDVSVTISAMKDRAGN 254

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+    I  DIT++K+S E I   A  D+LTG+PNR    DRL   ++ +    ++R  +
Sbjct: 255 IIGASKIVRDITQRKESQERIEYLAHYDSLTGLPNRTLLSDRLRIAIENARRY-SIRLAL 313

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +DID++K +ND LG  +GD +L ++ +R+   ++  D ++R+ G+ F ++L     + 
Sbjct: 314 LFVDIDRFKLVNDSLGHEIGDKLLKAVAQRMQSTVRQADTVSRVGGDEFVVLLSRIETAT 373

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A  A  +  SI+ P  + E E+ +TASIG + +  +   +S + +NA+ AMY AK +G
Sbjct: 374 DAARSAEKLITSISQPYQIEEHELLLTASIGISIYPDNGKDASSLTRNADAAMYSAKGQG 433

Query: 689 GNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N  + +        ++R+ ++ DL  A+   E++ +Y P I L    ++G+EAL++W+ 
Sbjct: 434 RNRYQFYSEDLTYAAAERLRLEHDLRGALSRDEIFPLYQPQIELATGRVIGVEALMRWNR 493

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
              G IS + F+ +AE+  +I A+  ++L +       W +        I +N+++    
Sbjct: 494 AGQGLISPASFIPVAEDSGLILALGEYILRKACLQARQWHEHQGFQG-TIAVNVSAVQFR 552

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            N+  + +  ++S+T + P  ++L  +ESVVM   E     +G L   GI L +DDFGT 
Sbjct: 553 QNDFTDVVLRVLSETGFPPECLELEVTESVVMQGLESVVQKMGILESHGIKLAIDDFGTG 612

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL     D +K + S +          AI+R+I+ M +++   ++A+ +  E   
Sbjct: 613 YSSLSYLRQFAIDRLKIDQSFVRDLPGDADAQAIIRAIVAMGRSLGLRVMAEGVETEAQA 672

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + L  + C   Q    A P+  N     LK R 
Sbjct: 673 RFLQDIECTESQGYLYARPMKSNDFEAWLKTRN 705


>gi|253998125|ref|YP_003050188.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           SIP3-4]
 gi|313200192|ref|YP_004038850.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylovorus sp.
           MP688]
 gi|253984804|gb|ACT49661.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
 gi|312439508|gb|ADQ83614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 738

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 151/585 (25%), Positives = 266/585 (45%), Gaps = 23/585 (3%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L        +          +  S DI++  D   +       + T+LG +  +M G   
Sbjct: 143 LQNKSIHARLEESETLYQYLIDSSPDIIYTLDDNGNFTFINNRVETLLGYSRETMLGKHY 202

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA---------ADNQFHWMIIRIRP 501
             L  IH  D +      +      R     E R+R           +  +  ++I    
Sbjct: 203 TLL--IHEEDYERAHHAFNERRTGNRAAKNVELRLRCQERRSERRQPEQNYITVVINAMG 260

Query: 502 MSN---SNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           +      +G       G+A DITE+KK+ + I   A+ D LT +PNR  F DRLT  +  
Sbjct: 261 IYGTHPEHGTPFNGTYGVARDITERKKAEQAITHQAYHDTLTDLPNRMLFKDRLTVAIHH 320

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  + + +  +M +D+D++K +ND LG   GD++L  +  R+   ++  D LAR+ G+ F
Sbjct: 321 AKRNKH-KLAIMFLDLDRFKWVNDTLGHLYGDELLKQVAARLRNCMREQDTLARMGGDEF 379

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L   N        A  +   +  P  L +REI +++SIG A +     +   ++K A
Sbjct: 380 TMLLHELNQPDDATVIAQKIFDELKRPFMLDDREIFISSSIGIAIYPDHGDSIENLIKRA 439

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMYH K RG N  + +  S        + ++ +L  A+E  ++ L Y P I L    +
Sbjct: 440 DIAMYHVKWRGKNGFQYYDPSMNSMFHKKLSLENELRRAIEKRQIVLYYQPKIHLDGHCV 499

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +GLEAL +W HP+ G +S  EF+ +AEE  +I A+   +LE     +  W+D        
Sbjct: 500 IGLEALARWHHPELGLVSPLEFIPLAEETGLIHALGEMLLEEACVQMRQWQDAGLN-NFS 558

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+ + + ++     +   I     S    ++  +E+++M + E S   L  L   G
Sbjct: 559 LAINISPQLVEEDAFVSRILTPIRHHQLSEDLFEIEITENLLMRDVESSISKLKELGSHG 618

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           I + LDDFGT  S L+YL   P  +VK + S ++  +   +  +I+ +I  +A   +  +
Sbjct: 619 IKIALDDFGTCYSSLAYLRRFPIHSVKIDKSFVSDISSTSENASIISAIAGIANGFKLDL 678

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           IA+ +     +  L  +GC  +Q    + PL    + ++L    P
Sbjct: 679 IAEGVETIPQMHTLQSLGCTKMQGFLFSKPLPAKEMTQVL--HNP 721


>gi|303248369|ref|ZP_07334630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302490277|gb|EFL50191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 820

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 149/604 (24%), Positives = 291/604 (48%), Gaps = 14/604 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              I    +  +++ A          ++  T  +    +    +  FS           S
Sbjct: 224 GAVIWISENARVVREADGKAAYYEGTVVDITDRKRAEESAAAQRAYFSQL------FANS 277

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              +   D+ R+ V        + G  +  + G       +I           + + +  
Sbjct: 278 PQAISLIDMHRNIVDVNAAFEDLFGFRAVDLKG--FGMRAFIVPEPLLTECENVRTAILS 335

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  ++   R R  D +   + +   P+  + G+    + I  DI+E+K   E I   AF
Sbjct: 336 GKSVVRETSR-RHQDGRLIPVSMIGFPIRIA-GETQGIVYIYQDISERKAFEEQITHQAF 393

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR  F DRL   L  +   D+ +  V++ID++K+K IND +G A GD +L  
Sbjct: 394 HDALTGLPNRSLFADRLERALTRTRRRDDYQYAVLMIDLNKFKGINDTMGHAAGDLLLRE 453

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + RR+   ++  D +ARL G+ F +IL    +  ++      +  ++  P  L    ++ 
Sbjct: 454 VARRLAGCVRSMDTVARLGGDEFAVILEELKSKKEVMAVVDRIGVTVEQPFCLCGTTVSP 513

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFRSDRVMIKEDLCL 713
            ASIG    T     S ++L++A++AMY AK +G  + +   ++     + + ++ DL  
Sbjct: 514 GASIGIVLHTRDYAASEDVLRDADIAMYRAKEQGRLSMIFDRQMHQEILEAITLEVDLRN 573

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E ++L L Y PI+ +   +I G EAL++WDHP  G +   +F+ +AEE  +I  +  +
Sbjct: 574 ALEQNQLLLHYQPIVDVKTGDIAGFEALVRWDHPSRGLVPPVKFIPLAEETGLIVPLGRY 633

Query: 774 MLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++   R + +W+ +      + + +N++ +  + + L E +  ++++T  +PS +KL  
Sbjct: 634 VIDEACRQLRAWQLEMPEAAHLTVSVNVSCRQFVKDGLVEHVAGVLAETGLAPSCLKLEI 693

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ESV+M +   +   L RL+ +G+ + +DDFGT  S LSYL  +P D +K + S ++G  
Sbjct: 694 TESVLMHDARVTARELQRLKDLGVKIAIDDFGTGYSSLSYLRQLPIDQLKIDRSFISGHE 753

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             ++   I++SII +A+++  T++A+ +     +  L    CD  Q    + PL  ++  
Sbjct: 754 CNDESQEIVKSIISLARSLGLTVVAEGVECPDQLDRLRLADCDKAQGFMFSRPLDKDAAH 813

Query: 951 KLLK 954
           +L++
Sbjct: 814 RLIR 817



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 31/262 (11%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           AW L     +              +  +      +    +   + + +       + + +
Sbjct: 78  AWNLCGAALLRCTRWSAGENGAVDVSVSNFTVGAVDGRPVSCMLFRDISTRRRAEENLRA 137

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--IN 459
              +       + + ++        +     +A I G  +   M    R+    ++    
Sbjct: 138 AERKYRSIFENAVEGIFQTTPEGRYLEANRTLARIYGFVSVVEMTQHFRDIGSQLYVDPG 197

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            RD+F   L +    R     +E ++R  D    W+    R +  ++G    Y G   DI
Sbjct: 198 RRDDFVRQLSAHDQVR----DFESQIRKKDGAVIWISENARVVREADGKAAYYEGTVVDI 253

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT---TILDLSATDDNLRPTVMVIDIDKY 576
           T++K++ E                R  F          + L     N      ++D++  
Sbjct: 254 TDRKRAEESAAAQ-----------RAYFSQLFANSPQAISLIDMHRN------IVDVN-- 294

Query: 577 KKINDVLGIAVGDDVLVSLTRR 598
               D+ G    D  L     R
Sbjct: 295 AAFEDLFGFRAVD--LKGFGMR 314


>gi|330943926|gb|EGH46137.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 983

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 147/563 (26%), Positives = 261/563 (46%), Gaps = 13/563 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 415 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 473

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                   R IL       +G  + E R+R  + + +   + I  + +  GD+  Y+   
Sbjct: 474 ESEQETRLRHILRQL--NGQGTWEGEIRLRRRNGEHYPAWVGITAVLDDEGDLASYVCFF 531

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DI+E++ S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 532 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 590

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
           K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 591 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALNRAIH 650

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ 
Sbjct: 651 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKECGKNNF 710

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 711 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 770

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 771 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 829

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 830 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 889

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL   P D +K + + + G    E+   I R+II MA ++  ++IAK +     ++ L 
Sbjct: 890 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAKGVETHEQLEFLR 949

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
              CD +Q      P+       
Sbjct: 950 EHDCDEVQGYLFGRPMPPAQFEA 972



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 266 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 325

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490
            +      W   I +      F  ++D             RL+ E  +R        AD 
Sbjct: 326 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 383

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 384 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 427



 Score = 58.0 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  +         LG +   +H     +    +H  D  N++ + L          LQ
Sbjct: 173 LSQRVIYRNHHFGYTLGYSKSELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQ 232

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  ++ +    IR + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 233 RVLRFRDRESNWRSFDIREQALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRML 292

Query: 533 A 533
           A
Sbjct: 293 A 293


>gi|307826353|ref|ZP_07656557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307732594|gb|EFO03467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1020

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 133/564 (23%), Positives = 253/564 (44%), Gaps = 10/564 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +     R +     S + +   D  +  +        + G +     G     L   
Sbjct: 449  RRKLSETDLRIASTAFESQEAMAITDKDQVILRVNQAFVRVTGYSVEEAVGKTPALLKS- 507

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               D   ++ +  S    R G  Q E   R  + + +   + I  +++  G +  Y+   
Sbjct: 508  GRQDAPFYQAMWKSL--SRDGHWQGEIWNRRKNGEVYPEWLNITAVTDEGGQVTNYVASF 565

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K +   I   AF D+LT +PNR+  L+RL   ++     +  +  ++++D+D++
Sbjct: 566  SDITERKTAEYEIQHLAFHDSLTQLPNRRLLLERLKHGIE-VERREGKQLALLMLDLDRF 624

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G   GD++L  + RRI   L+  D++ARL G+ F ++L    +    A  A  
Sbjct: 625  KAVNDSFGHQAGDELLQQVARRITSRLREVDMVARLGGDEFIVLLEDITHPDDAARVAEG 684

Query: 637  MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   ++    L    ++ +  SIG + +    +    +L  A+ A+YHAK  G      F
Sbjct: 685  IIADLSKSFQLPQSDDVQIGVSIGISLYPQHAVNPEMLLDYADTALYHAKDNGRGCFAYF 744

Query: 696  RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     +R+ ++  L  A++  EL + Y P + +    IVG EAL++W  P  G I 
Sbjct: 745  SEDLTIAVRERIALEVRLRKAIKQQELRVFYQPQMDIASGRIVGAEALVRWQDPVEGLIP 804

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ IAEE  +I  I  ++L    R    W +    PP+ + +N++      +++   
Sbjct: 805  PCRFIPIAEETNLIVEIGEWVLRETCRQGRQWLNMGL-PPLTLAVNVSPHQFRRSDINAL 863

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  ++  T +   +++L  +ES +M N +++  +L  L   G+ L +DDFGT  S L+YL
Sbjct: 864  VATVLRDTGFPAGQLELEITESGLMENQDKTTNILNSLHAQGVHLAIDDFGTGYSSLTYL 923

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             + P D +K + S +      +  + I  +I+ M   +   ++A+ +     +  L    
Sbjct: 924  KHFPLDVLKIDKSFIDDIPHNKDDMEIAATIVAMGHILGFKVLAEGVETLEQLAFLQEQS 983

Query: 932  CDYIQDSHVASPLGFNSILKLLKE 955
            CD  Q    + PL  +  + LL+ 
Sbjct: 984  CDLYQGYLKSHPLPADDFVALLQA 1007



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 13/160 (8%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I  V      +  +     R       +  ++W     +             G       
Sbjct: 318 ITDVTERKRATASLLESEARFRTMADSAPVLIWIASPDKFFHYFNKGWLEFTGRTMEQEI 377

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G    W+  +H  D         +    R      E+R+R  D ++ W++    P+ +  
Sbjct: 378 GN--GWIANVHPEDFQRCFNTYVTSFDAR-HEFSMEYRLRRFDGEYRWLLDHGVPLYDEQ 434

Query: 507 GDILRYIGIANDITEQK----------KSLEGILCNAFQD 536
              L YIG   DIT +K           + E     A  D
Sbjct: 435 DTFLGYIGSCIDITRRKLSETDLRIASTAFESQEAMAITD 474



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIA 435
           I     V + +         +    +R          +V+ + +  D        +  I 
Sbjct: 180 ITALLAVTRDITEHKASETALQEALDRLQKIASRVPGLVFQFQMRPDGSSCFPFASEAIR 239

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            I  ++   +          +H +D D     + +    R    ++E+RV+  D    W+
Sbjct: 240 DIYRVSPEDVRDDASRVYAVLHPDDYDGIVASIQAS-ARRLTPWRHEYRVKFDDGTVRWL 298

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                P   ++G +L + G   D+TE+K++  
Sbjct: 299 FGNSLPQREADGSVL-WHGFITDVTERKRATA 329



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 15/200 (7%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +I + +L  +    + + +   +  D +   LV    +  +++           GYF + 
Sbjct: 22  VILSVLLTEVIVAVMGLLLKGEVPPDYLLTGLVASCFVASLVVAM--------LGYFLEK 73

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHI 458
           +     +    +    + V         +        +  + + S+   +   +   +  
Sbjct: 74  LTESQLQLYAIIEAEPECVKLVAADGTLLQMNRAGLNM--IEADSLDQVLGQQIPQLMTA 131

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             +D F T+         G L++E R       + WM     P+ +S+G I   + +  D
Sbjct: 132 EYQDAFITLTKRVFEGESGNLKFEMRGLK--GTYRWMDTHAVPLRDSHGHITALLAVTRD 189

Query: 519 ITEQKKSLEGILCNAFQDNL 538
           ITE K + E  L  A  D L
Sbjct: 190 ITEHK-ASETALQEAL-DRL 207


>gi|117925008|ref|YP_865625.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117608764|gb|ABK44219.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 720

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 159/553 (28%), Positives = 262/553 (47%), Gaps = 11/553 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
               + + +   D         P    I G   GS+ G   + L    H  DR  +  + 
Sbjct: 164 VFENTTEGIVVTDSTACITNVNPSFEAITGYDRGSVLGQNISILQSGRH--DRRFYGKMW 221

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            + +    G+ Q E   R  + + +   + I  +   +G    Y+G+  D+T  K+S E 
Sbjct: 222 QTLLT--AGKWQGEVWNRRKNGEIYPQWVNISAIRTGDGQTESYVGVFTDLTRIKESEEN 279

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +L  +  D LT +PNR  F DRL   L  SA D      V+++D+D++K IND +G  VG
Sbjct: 280 LLYLSGHDALTELPNRLLFHDRLNQTLVESA-DSGSIVAVLIVDLDRFKVINDSMGHEVG 338

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  +  R+  +      LARL G+ FGI+L +   +   A  A  +   +A PI + 
Sbjct: 339 DSLLCEVATRLRAICPAKATLARLGGDEFGIVLPNMTQNRDAALLAQEVLTRVAQPITIS 398

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
           E E  V ASIG   +       S +++NAE AMYHAK  G N+ + +R     +      
Sbjct: 399 EVEFAVGASIGMTVYPLDGEKPSVLMRNAESAMYHAKQSGRNNFQFYRSELNTASLARIL 458

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  AV+  E  L Y P + L   +++G+EALI+W HP+ G +S  EF+ +AEE  +
Sbjct: 459 LESGLRNAVDRQEFLLFYQPQMELATGKLIGMEALIRWQHPEQGMVSPGEFIPLAEETGL 518

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  +  + L+   R    W DQ    P+ I +N++       +  E +   + ++   P 
Sbjct: 519 VIPMGQWALKEACRQSKVWMDQTG-VPLRISVNLSGIQFRLPDFTEMVMRTVGESGLPPH 577

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES+ MG+ E +   L  L + G+ L +DDFGT  S LSYL   P DT+K + S
Sbjct: 578 CLELELTESIAMGDVEETLEKLTILSRFGVLLAIDDFGTGFSSLSYLKKFPIDTLKIDQS 637

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +       +  AI+R+ I +A ++   +IA+ +     ++ L +  CD IQ      PL
Sbjct: 638 FVRNCTRDPEDAAIIRAFINLAHSLNLEVIAEGVEHLEQLEFLAQESCDEIQGYFYGRPL 697

Query: 945 GFNSILKLLKERF 957
             +     + + F
Sbjct: 698 SGDKFEMFMLDAF 710


>gi|229587761|ref|YP_002869880.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229359627|emb|CAY46469.1| putative sensory box GGDEF/EAL domains protein [Pseudomonas
           fluorescens SBW25]
          Length = 662

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 166/654 (25%), Positives = 285/654 (43%), Gaps = 23/654 (3%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILI-FIWFIGLWMAITKRLDN----DIIQPALVGGL 375
            +   I  H +  Y  A      ++L+   W       + + LDN    +          
Sbjct: 18  VFLVRITDHMLFSYRGARWAGLVYLLVSMTWISLTERLLIEFLDNPSALNHWLQVRGYVW 77

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTP 432
           V +  L+ + +I    A     Q +  + ER   A      + + V   D     V    
Sbjct: 78  VALSALVIY-LICARFARANQQQPLKENRERLRQAAAVFDCTREGVLVTDAQGLIVHVNR 136

Query: 433 DIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
               I G +   + G     +    H     NF   +   +  R G    E   R    +
Sbjct: 137 AFMEITGYSREDVMGRQPSLFKSGRHS---SNFYQQMFQSLE-RCGEWSGEIWNRRKSGE 192

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            +     IR + +  G +  Y+ + +DI+  K S   +   A  D LT +PNR  F DR 
Sbjct: 193 IYPQWQTIRVIHDDLGQVSHYVAVFSDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRA 252

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L  +         ++++D+D +K IND LG  VGD +L  +  R+  L      LAR
Sbjct: 253 QQALASAQVHKRG-CALLLLDLDHFKIINDSLGHNVGDQLLKLVGERLKALFGPGVTLAR 311

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F ++  S     + A  A  M +++  P      ++ ++ASIG + + +  +++ 
Sbjct: 312 LGGDEFAVLAESCPQVAQAASLAQRMLEAMKQPFLFDGHQLFISASIGISLFPNDALSAE 371

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           ++L+NA+ A++ AK  G      +     +   +RV I  +L  A+E  EL + Y P+  
Sbjct: 372 QLLRNADSALFKAKSTGREGYALYTEELTAHAQNRVEIASELRRALEQKELRVYYQPVHD 431

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    ++G+EAL++W HP  G +   EF+ IAE   +I  I+ +++++  R +  W  Q 
Sbjct: 432 LNGSRLIGVEALVRWQHPARGLVPPGEFIPIAERTGLIADIDAWVMDQACRQMCDWLAQG 491

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                FI IN++S+     EL E +  ++  T   P+ ++L  +ES VM +PE +   L 
Sbjct: 492 APLS-FIAINVSSRLFARRELYEQVAQVLHDTGLDPAFLELEVTESAVMDDPEVALEQLH 550

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           RLR++G+ L +DDFGT  S L  L  +P   +K +   + G    E   AI+R +I +AK
Sbjct: 551 RLRELGLRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVVIALAK 610

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           ++   + A+ I  E   + L    CD  Q      P+    I      R P+++
Sbjct: 611 SMGMQVHAEGIEQEEQARFLLDQQCDMGQGYWFGKPMPAQEI-DW--SRAPVIR 661


>gi|294497855|ref|YP_003561555.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus megaterium QM B1551]
 gi|294347792|gb|ADE68121.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium QM B1551]
          Length = 814

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 145/583 (24%), Positives = 280/583 (48%), Gaps = 9/583 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATIL 438
           I+    V+  +  +   +  +    ++           +W  D+  +  +  +  ++ I 
Sbjct: 235 IVQLIGVVHDITESKVITNELKQKEQQFQTIYNNLDAGIWSVDVQSNEMIVCSSGVSNIY 294

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  +    G    W  +IH  D+             +   ++ ++R+     +  W+  R
Sbjct: 295 GEDAAKFLGNRDLWESFIHPEDKPAVAKGQHQLQKGK--MIRQQYRIYTKTGEMKWVKDR 352

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             P  + NG ++R  GI  DIT +KK ++ +   A  D++T +PNR+ F   L   +   
Sbjct: 353 CIPTLDENGKLMRIDGIVEDITAEKKYMDHVEYLATHDHVTNLPNRRKFERELKNFIRQM 412

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             + +L   V  + ++++K IND LG  VGD +L  +  R+ + +    +LAR   +   
Sbjct: 413 KKERDL-LAVFYLGLNRFKHINDTLGHDVGDRLLRRIANRLKKCVTLDVMLARAGEDELA 471

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I  +S  +  +    A A+ + I   I + +  + VTASIG + +      +  +L NA 
Sbjct: 472 ICFLSLAHIHECQKLAAALLQEIEKEITIDDFSLCVTASIGISIYPHDGEDAKMLLTNAN 531

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAM  AK  G +  + +   + S       +++ L  A+   E ++ Y P +     EI 
Sbjct: 532 LAMRRAKEVGRSDWQLYSPLMDSETYKSYHLEKGLRNALLQDEFFIEYQPKVHTNSREID 591

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EALI+W+HP+WG +S  +F+ +AEE  +I  +  ++++ + + +  W++Q     + +
Sbjct: 592 SIEALIRWNHPEWGRVSPEDFIPLAEETHLIIELGDWVIQHVCKQLQQWKNQGLQI-VPV 650

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++SK LL +   E +Q  ++     PS I+   +ES ++   E  + ++  L+KIG+
Sbjct: 651 SINVSSKHLLKSGFVEHVQQTLAHYNIDPSFIEFEVTESSIIQYEEHVKKVMDELKKIGV 710

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTII 914
           +  LDDFGT  S LS+L    F+T+K + + +  +T+  K+ AI +SI+ +A  +   +I
Sbjct: 711 TFALDDFGTGFSSLSHLKDFEFNTLKIDKTFIQHATDKGKQQAITKSILYLAHALNMKVI 770

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +  +  +  L +  C +IQ   V+ P     I + LK+ F
Sbjct: 771 AEGVETKEQLAFLQKHECSFIQGYIVSQPAAPQKIAEYLKKPF 813



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 2/111 (1%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFV 472
           +    W +D+  D+   +P +  I GL         ++N L +++   +      +   +
Sbjct: 140 ANVGSWYYDVREDKSYWSPQLYNIYGLNPNQHFTPSLKNVLQFVNRCGQKRLEKAVMEAL 199

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               G    E+ +     +   +  +   + +  G+I++ IG+ +DITE K
Sbjct: 200 ST-GGSYTIEYTLLRPSGEERTVFEQADALVDEQGNIVQLIGVVHDITESK 249



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/137 (8%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 400 IFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           I    +R +   +    + ++  +   D + +      + G          +     IH 
Sbjct: 2   IMKRLDRLNTQLLKEYSEGIFFINCEGDIMFSNEAAFKLTGNEHKE---KSQQLTALIHT 58

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           + +   +      +   + +      +     +   + I + P+  S   +     +  D
Sbjct: 59  SKQQQAQDFFQRALQGEKVQFSTT--INHNTKKELHLDITLIPIIVSE-QVAGVYAVCRD 115

Query: 519 ITEQKKSLEGILCNAFQ 535
            +++++    I      
Sbjct: 116 DSKEQERSNHISKLETH 132


>gi|317152066|ref|YP_004120114.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942317|gb|ADU61368.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 849

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 158/604 (26%), Positives = 276/604 (45%), Gaps = 18/604 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG-------SGDIVWDW 421
             L   ++LIV  + F V++ +  +      I    ER   A+           D  +DW
Sbjct: 202 TILFVSILLIVAGLEFYVLRQISRSAREKAKIRQQRERLLEALRTGEERYRTIADFAYDW 261

Query: 422 DI----VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +I        +  +P    I G                I   DRD +   L        G
Sbjct: 262 EIWLGTEGGVLYCSPACERISGHPPERYFEQPELLREIIVSEDRDAWDKYLLFINNEVGG 321

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L  +FR+     Q  W+ +  R +S      L       DIT++K+  E +   A  D 
Sbjct: 322 SL--DFRIVTRSGQTRWLCVAGRAVSGIGMKPLGIRCSFRDITDRKEMEEQLRHQALHDP 379

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT + NR   LDR+   +  +   +N    ++ +D+D++K IND LG   GD VL+    
Sbjct: 380 LTELANRTLCLDRVGQAMRRAGRRENYYFALVFLDLDRFKVINDSLGHRFGDLVLMETAN 439

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+ + ++  D ++R  G+ F ++L    +  +       +R ++A P      E+  TAS
Sbjct: 440 RLAQHVRTLDTVSRFGGDEFVLLLDELASPGEAIRIVKRIRDALAKPFIFTGHEVQTTAS 499

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
            G        I +S++L+ A +AM+ AK  G N  + F         D++ ++ D+   +
Sbjct: 500 FGIVLSPIPDIRASDVLQRANIAMHQAKEAGRNRFKVFTTRMLESAVDQLTMENDMRRGL 559

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E+ E ++ Y PI+ L   +I+G EAL +WDHP+ G I  +EF+ +AEE   I  +  ++L
Sbjct: 560 ESGEFHVQYQPIMDLDGSDIMGFEALARWDHPERGPIPPAEFIPMAEESGTIIKLGEWVL 619

Query: 776 ERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
                 +  WR        IF+ +N++SK     EL + +   +      P  +KL  +E
Sbjct: 620 RESLLTLARWRAATPGAQDIFMSVNLSSKQFARMELDKLVIDALRAADLPPEVLKLEITE 679

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           + +M +P+ +  +L RLRKIG+  ++DDFGT  S LS L  +P DT+K + S ++     
Sbjct: 680 TALMEHPDAAINVLKRLRKIGVRFSIDDFGTGYSSLSQLQQLPVDTLKVDRSFISRMKSD 739

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            + + I+R++I +A ++   ++A+ +     +  L  + C+ +Q  +   PL       L
Sbjct: 740 PENMEIVRAVIALAHSLGLDVVAEGVEDAGQLCSLMELKCESVQGFYFHRPLSPTDAEDL 799

Query: 953 LKER 956
           L +R
Sbjct: 800 LHKR 803


>gi|117925126|ref|YP_865743.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117608882|gb|ABK44337.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 754

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 137/606 (22%), Positives = 266/606 (43%), Gaps = 12/606 (1%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGS 414
           +   ++L     Q        +    +  T     L+     +     G R        +
Sbjct: 137 LQAAEQLRRIEEQARQQLEQRVRERTLELTQSNERLSNEVAVRMRAESGLRLIHKVFENT 196

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVG 473
            + +   D     +   P    I G +     G   R++    H  D   +  +      
Sbjct: 197 SEAIILTDPQGMILDINPAFTEITGFSREEALGHNPRSFKSDRH--DATFYTNMWRKIAE 254

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              G  Q E   R  + + +   + I  + N  G++  YIGI +DI+E K +   +   A
Sbjct: 255 E--GFWQGEIWDRRKNGEIYPKRLTINAVRNQAGEVENYIGIFSDISESKATELKLERLA 312

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR  F DRL      +      +  V  ID+D++K++ND LG + GD++L 
Sbjct: 313 YYDALTQLPNRMLFHDRLEHEFYNAQRHRK-QVAVFFIDLDRFKQVNDTLGHSAGDELLQ 371

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+   ++  D +AR+ G+ F +IL   +++  +A  A  + + +   I++   +I 
Sbjct: 372 HVAQRLEGCVRAADTVARMGGDEFTVILADISDNESVARVARKVLEELQKSISIKGHDIF 431

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDL 711
           V ASIG A +  +      + KNA++AMY AK  G  + + F        S R+ ++  L
Sbjct: 432 VGASIGIALYPDNGNDVETLTKNADMAMYRAKESGRGNYKFFSEEMNVSTSQRLSLESQL 491

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AV  + L + Y P + +    +VG+EAL++W       I   +F+ +AEE  +I  + 
Sbjct: 492 HHAVNANLLEVYYQPKLNMQSGIMVGMEALVRWPQADGSMIPPIQFIPVAEETGLIVPLG 551

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             ++ +   D   W  +     + + +N+++++     L   ++  +++        ++ 
Sbjct: 552 RLVMRQAMLDCARWVRETG-MNLRVAVNLSAREFQSPGLVVEIEQTLAECGLDARHFEVE 610

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES++M + E +   L ++ ++GI + +DDFGT  S LSYL   P  ++K + S +   
Sbjct: 611 ITESLMMHDVENAIATLEQISRLGIHIAMDDFGTGYSSLSYLKKFPIHSLKVDRSFVKDI 670

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                 I I+ +I+ +AK +   ++A+ +  +  +  L +  CD  Q    + PL     
Sbjct: 671 PDDPNDIEIVAAILSLAKVLNLKVVAEGVETQEQLSFLRQNLCDECQGYSFSKPLSAVDF 730

Query: 950 LKLLKE 955
              L +
Sbjct: 731 TAFLAD 736


>gi|317130370|ref|YP_004096652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475318|gb|ADU31921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 840

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 153/567 (26%), Positives = 286/567 (50%), Gaps = 11/567 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIR 450
                +Q +  + ++  +      +I+W  DI   +V   +     + G     +    +
Sbjct: 271 EQKEANQRLVDNEKQARIIFNNLDEIIWSIDISSRKVIFCSNGFEQLFGYCLDDLIDERQ 330

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   IH  D       L +     +  L++E RV+    +  W+ I+  P+ +  GD +
Sbjct: 331 LWQKVIHEEDIKGIPEKLITLSQGNQ--LKFECRVQHTSAEVRWIEIKALPIIDDLGDFI 388

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R  GI  DITE+KK    +   A  D+LT +PNR+SF  +L  ++  +    ++  +V  
Sbjct: 389 RVDGIIRDITEKKKLDAKMHHIAHHDHLTNLPNRRSFDIKLHELIHHAKKTKSI-FSVFY 447

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DID++K +ND+LG   GDD+L  ++ R+ ++L+    +AR SG+ F ++L       ++
Sbjct: 448 LDIDRFKHVNDMLGHNYGDDLLKEISYRLKQVLQSH-FIARTSGDEFAVLLHDVT-EEEV 505

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             FA  +   +    ++ E E  VTASIG A +      +  +LKNA+ A+  AK  G +
Sbjct: 506 IVFAHNIVNVMRQAFHISEVESYVTASIGIAFYPKDGENAVTLLKNADTALSFAKIDGKD 565

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + + +          +  +++D+ LA+E  E YL Y P I +  ++++G EALI+W HPK
Sbjct: 566 NYKHYIPEMNEDSHNIYFLEKDMRLALEKEEFYLEYQPKIDVKTKKVIGCEALIRWTHPK 625

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S ++F+ IAEE  +I  I  ++++++ + +  W  +     + + INI+++ LL  
Sbjct: 626 RGIVSPAQFIPIAEESDLICDIGNWVIKKVCKQLKKWHLEGINT-VPVSINISAQHLLKT 684

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +   +     SPS ++L  +E+ ++   +     +  L+K+G+ L+LDDFG   S
Sbjct: 685 SLLDTIFTALKANHVSPSLLELEITETSLIQPNQSVFSTIRSLKKLGVKLSLDDFGVGYS 744

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+++   P DT+K + S ++   + +    I+ SII MA  +  TI+A+ +  E  +  
Sbjct: 745 SLTHIRKFPLDTLKIDKSFISKVPTEKDDAVIISSIIEMAHGLGLTILAEGVETEEQLLF 804

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L    CD+IQ    + P+  +   + L
Sbjct: 805 LEEKNCDHIQGFLFSKPISNDHFKQAL 831



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFV 472
           +    WD+D   D++  +  +  I GL   +   P    +L Y+H +DR      +   +
Sbjct: 164 ANIGSWDYDPHNDKLYWSKQMFRIFGLDEKTNTAPSMEQYLKYVHHDDRLRDIVAIQDAM 223

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++    YE R+   D     + I+  P+ ++ G++++ IG  +DITEQK++ + 
Sbjct: 224 EKKK-SFNYESRIFRKDGMKRIVKIQGNPIIDNEGNVVKIIGNTHDITEQKEANQR 278


>gi|218531280|ref|YP_002422096.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218523583|gb|ACK84168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 772

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 153/683 (22%), Positives = 288/683 (42%), Gaps = 26/683 (3%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
              +  +       +  L  +  +    T       +   +L    +     +     A 
Sbjct: 90  APAMRNLIAEATLTVVCLMSVPSWLLSQTTG-TTYAILVCLLTGILWAGCLTLATVRAAA 148

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           ++  A     +    + +    +    ++  +L     L  +    T  +  L      Q
Sbjct: 149 MVYVATGAAIV---VIGLLWANQDFEHLMLASLFPLGALTAMRSVDTQAKMFLDNQRQQQ 205

Query: 399 GIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
            +    +   L +      + D +W+ D        +      LG  S ++ G       
Sbjct: 206 SLTKQSDLIGLLLKDYEEQTSDWLWETDSSLRYTNPSDRFVEALGRPSDAIRG--ATLGS 263

Query: 455 YIHINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +   +          + +    R+           A  +  W  I  RP+ +  G  L 
Sbjct: 264 LLQDEEATGNGAACLQVRACAEARQPFRDIVVPFTRA-GEMRWWSISGRPVYDETGTFLG 322

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G+ +D+T  K +   I   A  D LTG+PNR    + L   L            V+ +
Sbjct: 323 YRGVCSDVTATKDAELRIAHLAHHDALTGLPNRAFMSESLHQALRDPDR---ACLAVLSL 379

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G   GD +L S+  R+   +   DI+AR  G+ F ++ ++  +  ++ 
Sbjct: 380 DLDGFKAVNDRYGHPGGDALLTSVAERLQNEVSGGDIVARFGGDEFVVLNVAFTSPSEVE 439

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D A  + +S++ P+ L    +T+  SIG A   +   T+ E+LKNA+ A+Y AK  G   
Sbjct: 440 DLARRLIESLSTPVPLDNESVTIGVSIGIAFAPTDGRTAEELLKNADAALYRAKTAGRGT 499

Query: 692 VESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F     R    R  + +DL  A+   EL L Y P ++     I G EAL++W HP+ 
Sbjct: 500 FRFFEPEMDRKLQARQRLVQDLRNALTRDELRLDYQPFVKSETGVISGCEALLRWRHPER 559

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF+ +AEE  +I  I ++++++  R+  SW          I +N++       +
Sbjct: 560 GMISPVEFIPLAEESGLIVPIGMWVIQQACREAASWPSTY-----RISVNVSPVQFRSRD 614

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + + A ++ +  +P+R+++  +E+V++ + + +  +L ++R +G+ + LDDFGT  S 
Sbjct: 615 LPQVILAALTSSGLAPARLEVEVTEAVLIDDADTALEILRQIRSLGVRVALDDFGTGYSS 674

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PFD +K + S +           I+++I  MA+ +  T+ A+ +  +   K L
Sbjct: 675 LSYLRRFPFDKIKIDRSFVQELDTRHDSQVIVQAIRDMAQGLGMTVTAEGVETDDQAKRL 734

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
            + GC+ +Q    + P   N + 
Sbjct: 735 RQTGCEELQGFLYSRPRPANELT 757


>gi|146309464|ref|YP_001189929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145577665|gb|ABP87197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 765

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 159/577 (27%), Positives = 274/577 (47%), Gaps = 12/577 (2%)

Query: 384 FTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           F  I   L +   +Q   +     R + A+ G+ D +W+W + +D++  +    ++LGL 
Sbjct: 170 FFDIGLALDSYGAAQRKALQDSEARYARAMRGANDGLWEWQLEQDQLYLSERWTSMLGLD 229

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             S+    R+W   +H +D    R  +D+ +      L +E+R+R  D  + W+++R   
Sbjct: 230 RDSLAPTSRSWFSRVHGDDLPGLRQAIDNHLRGLSPTLHHEYRIRRRDGSYLWVLVRGVA 289

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + S G + R  G  +DI++++ + E +   A  D LTG+ NR    + L   L      
Sbjct: 290 ETCSGG-VRRIAGSQSDISQRRAAQEQLHHAARHDPLTGLANRARLGELLQQALQRQQRP 348

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ID+D++K IND LG  +GD VLV +  R+   L+  D LAR  G+ F  +L
Sbjct: 349 GAREAALLFIDLDRFKLINDSLGHQIGDRVLVEVAERLSHCLRPGDHLARFGGDEFVALL 408

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                       A  M  S+  P+ L E+ + VTASIG A+         + L+ A+LA+
Sbjct: 409 DDLACMGDAERVAQRMLDSLHPPLRLQEQTLAVTASIGIAALQERGH-PLDPLQAADLAL 467

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIV--G 737
           Y AK  G      +     +  +  ++    L  A    EL LVY PI RL   + V  G
Sbjct: 468 YRAKSAGKAQFARYSSELQQQAQRQLELQNALAQACSCGELRLVYQPICRLDQGQPVLMG 527

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W H     IS  EF+   EE   I A+  ++L +    + +W+  A    +   
Sbjct: 528 VEALLRWQH-DGREISPLEFIPCLEESGEILAVGDWVLRQACTQVRAWQ-LAGQTQLRCS 585

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++S+ L   +    +  ++ +T    + + L  +ES +M +  ++   L  L  +G+ 
Sbjct: 586 VNLSSRQLQQGDFAARVADVLRETGLPAASLVLEITESQLMQDSAQNLACLRELASLGVQ 645

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L LDDFGT  S L YL   P   +K + S + G+    + +AI R+II +  ++  T++A
Sbjct: 646 LALDDFGTGYSSLGYLKRFPLHIIKVDKSFIAGTPQDAESLAISRAIIGLGHSLGLTVVA 705

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +  +  I  L R GC Y Q    + P   + + +L
Sbjct: 706 EGVEQQAQIDFLGREGCLYAQGYWFSRPRSPDDLQRL 742


>gi|83312079|ref|YP_422343.1| hypothetical protein amb2980 [Magnetospirillum magneticum AMB-1]
 gi|82946920|dbj|BAE51784.1| Hypothetical 918 kDa protein Y4LL [Magnetospirillum magneticum
           AMB-1]
          Length = 830

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 143/598 (23%), Positives = 271/598 (45%), Gaps = 13/598 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
            +I+   L    +             V+      + +       +     +G+ ++  D 
Sbjct: 227 GNILWARLTVTAMREGSDNELRFTVAVVEDVTEKKRLEDHMRLAATVFESTGEGLFVTDE 286

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQY 481
            R  +   P    + G  +  + G    +L    H     D     L        G+ Q 
Sbjct: 287 KRQIIHVNPAFTELTGYPADEVIGRTPKFLASGRHTPEFYDAVFKTLAEC-----GKWQG 341

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E   R    +     + I  + N  G++  Y+ + +DIT +K+  E +   A  D LT +
Sbjct: 342 EIWNRRKTGEMFAEWLNISVVRNERGELTNYVAVFSDITSRKQDEERLNYQANHDPLTRL 401

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F +RLT  L  +  +  +   ++ ID+D +K++ND LG   GD +L  +  R+  
Sbjct: 402 PNRTLFQERLTRALTRAHRNQAI-VALLFIDLDFFKQVNDTLGHLAGDILLQQVAERLTS 460

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            ++  D +ARL+G+ F +IL   +     A  A  +   +A P +L   E  +++SIG A
Sbjct: 461 CVRQGDTVARLAGDEFTVILEEISEPRDGAVVAHKILSLLAEPFDLQGHEARISSSIGVA 520

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSE 719
            + S    +  ++K A+ AMY AKH+G N        +++   +R+ ++  L  AVE  E
Sbjct: 521 LYPSDGGDAQTLIKLADAAMYRAKHQGRNACRFHSESINAQAFERLALESALRHAVERRE 580

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y PI       +V +EAL++W HP +G I  ++F+ +AEE  +I  +  F+L+   
Sbjct: 581 FLLHYQPIFDARSGSVVAVEALLRWRHPDFGMIMPNQFLPLAEETGLIMPVGKFVLDEAC 640

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R   +W D      + + IN++S+ L   EL E + A +  +   PS ++L   ES ++ 
Sbjct: 641 RQAKAWLDA-GHTGLKVGINLSSRQLRAPELIEDIAAALEGSGLPPSALELDVPESAIID 699

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIA 897
             +    +  + + +G+ + +D FG+  S  ++L  +P +T+K +   +  +    +   
Sbjct: 700 KGQDVDAIFTQFKTLGVRMAIDAFGSGYSSFAFLRKLPSNTLKIDQGFVRDAASGAEESE 759

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ +I+ +A+ +  +++A  I  E  +  L +  CD +Q    A P+    + + L+ 
Sbjct: 760 IVTAIVAVARGLHLSVVAPGIETEEQLAHLVKYDCDMVQGFLFAHPMPAEELTEFLRA 817



 Score = 93.5 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             I++ +        + +   R       +G  V   D     +   P   T++G +   
Sbjct: 124 RAIRYAIGRSAADAALRTSESRFRALFDNAGTGVILSDAAGAYIHCNPAFCTMVGYSDAE 183

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS- 503
           +      +    +  D +    + D  +  R    +   R    D    W  + +  M  
Sbjct: 184 L--QKMTYRDITYPEDMNAHTQMRDDMMAGRTDSYELTKRYIRRDGNILWARLTVTAMRE 241

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            S+ ++   + +  D+TE+K+  + +   A 
Sbjct: 242 GSDNELRFTVAVVEDVTEKKRLEDHMRLAAT 272


>gi|71907211|ref|YP_284798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
 gi|71846832|gb|AAZ46328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
          Length = 1093

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 150/605 (24%), Positives = 272/605 (44%), Gaps = 51/605 (8%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            +       +      Q   +  +  ++   D     ++  P    +L   S  + G    
Sbjct: 481  SRKVAEDSLRESVMLQRAILNSAKLMILSTDSEGRVISCNPATEQMLAYPSAELLGRTPV 540

Query: 452  WLPYIHINDRDNFRTI-----------LDSFVGY-RRGRLQY-EFRVRAADNQFHWMIIR 498
               ++    ++  R +           +D  +   R G +   ++  +  D +   + + 
Sbjct: 541  ECFFLREEIQERRRALSSETGFDPASDIDVLLARVRLGSVDQGQWTFQRKDGEKFIVELS 600

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLE------------------------------- 527
            I  +   +     ++ +A+DITE+K++ +                               
Sbjct: 601  ISALHPEDKKAQGFLFVASDITERKRAEDALLRSRDELELRVKERTSELESEVLERRRIE 660

Query: 528  -GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
              +   A  D LTG+ NR     RL   +D +A DD  +  ++ ID+D++K IND LG  
Sbjct: 661  SKLRYLAHHDALTGLANRTLLQQRLGEAMDNAAQDD-TKVAILFIDLDRFKTINDSLGHH 719

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            +GD +L ++  R+ E L+  D +ARL G+ F IIL  + N       A  +  ++  PI 
Sbjct: 720  IGDTLLKNVASRLTETLRSNDTIARLGGDEFMIILPLKANEALAGKLASKILDALRPPIR 779

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDR 704
            +   E+ VT SIG   + +  +T + +++NA+ AMY AK  G N    F         + 
Sbjct: 780  IDGHELFVTPSIGICFYPNDGVTVNALMRNADTAMYQAKANGRNTYCYFTAEMNAAADNY 839

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              I+ DL  AV+ +E  + Y P+I L    I   EAL++W HP  G +  ++F+ +AEE 
Sbjct: 840  FQIESDLRRAVDRNEFEVFYQPVIDLKTHRITSYEALVRWRHPTKGLVGPAQFITVAEES 899

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  I   +L +    + SW D+    PI + +N++     D  L EG+  ++     +
Sbjct: 900  GLIGEIGTIVLRQACSQLRSWIDEGFTSPI-LALNLSPIQFNDPNLTEGICRILRDYDLT 958

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            P RI+L  +E+V+M + E +   L  L   G  L++DDFGT  S L+YL   P DT+K +
Sbjct: 959  PDRIELEITETVIMQDGELALGTLQNLSSRGFRLSIDDFGTGYSSLAYLKRFPVDTLKID 1018

Query: 885  GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S +T     E   AI+ +I+ +A ++  ++IA+ +  +     L+ + C++ Q  ++A 
Sbjct: 1019 RSFITDMTANENDRAIVTAIMALANSLHLSVIAEGVETKEQYDLLSALNCNFAQGYYMAK 1078

Query: 943  PLGFN 947
            P+   
Sbjct: 1079 PMPAE 1083



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 4/136 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +I  +       + +    +        +   +   +     +        I+G AS  +
Sbjct: 100 IINDISERKQAERNLHETVQELQSIFNNASVGIVFTNRRT-VLRCNRRFEEIVGYASDEL 158

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           HG     L     +  +  R         +        + R  D    W  +  + + + 
Sbjct: 159 HGMPTANLYASAESHEELGRQSSPLLSAGKA--FSATKQFRRKDGHLIWCQVFAKAI-DP 215

Query: 506 NGDILRYIGIANDITE 521
           N      + IA D+TE
Sbjct: 216 NDPSRGIVWIAADVTE 231



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 5/152 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +   V       + +          +  S   +      R  V        + G    + 
Sbjct: 225 IAADVTEAVSTREALEKSSREMEALMANSSVGIVVTH-DRKIVRYNQRFGKLFGFPGENG 283

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L        +  R    +    +    Q E  +R  D    W+ +    +++ 
Sbjct: 284 IGMDTAGLYRSAEEHTELNRRAAPALFQAK--PFQTELYMRRQDGSDIWVNLIGY-VADP 340

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               +    IA D T  K++ E  L  A+ D 
Sbjct: 341 TDPSMGVFWIAEDRTAFKQAEEE-LKKAYFDQ 371



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 15/176 (8%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
           +  +DI    +          +G   + +   A     + +      Q L        + 
Sbjct: 324 QDGSDIWVNLIGYVADPTDPSMGVFWIAEDRTAFKQAEEELKKAYFDQRLIFDNCVAGIA 383

Query: 420 DWDIVRDRVT--TTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGY 474
               VR+RV          + G   G + G       +    H         +L      
Sbjct: 384 ---FVRNRVFQQCNRRFEELYGYGPGELTGKPTRVTYFSDKAHAEIGTTAYEML-----G 435

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           R      E   R  +    WM I  R + +        I    DIT +K + + + 
Sbjct: 436 RGETFVSEVVHRRQNGDPIWMRITGRAI-DPANPNDGSIWNYEDITSRKVAEDSLR 490



 Score = 48.0 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 7/121 (5%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILD 469
           +  +   +  +    + +      + I G  +  +    R        +D        + 
Sbjct: 1   MNNAPVGIL-YTKNGEILRYNAKFSEIFGFDTEIIGKSARQLC----PSDAAYEALGEVA 55

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +         E ++R  D    W       + +        I I NDI+E+K++   +
Sbjct: 56  GPILSAGKPFHQEIQLRHHDGHTFWADAVAY-LFDPRHPAEGTIWIINDISERKQAERNL 114

Query: 530 L 530
            
Sbjct: 115 H 115


>gi|157376476|ref|YP_001475076.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157318850|gb|ABV37948.1| signal transduction protein containing a membrane domain an EAL and a
            GGDEF domain-like protein [Shewanella sediminis HAW-EB3]
          Length = 1055

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 150/578 (25%), Positives = 269/578 (46%), Gaps = 14/578 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  + +A     Q    + E  +     S + +   D     +   P    I G +  
Sbjct: 475  LGLFANRVALELQRQSTHKEMEMAASVFKESAEAIVICDSEDKILRVNPAFYKITGYSQI 534

Query: 444  SMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G     L      DR   +++L        +    Q E      + +       + P
Sbjct: 535  EVVGQSPQLLQS----DRP-IQSMLHNREAALKKNDIWQCEVSGYRKNGEHFLSWQTVIP 589

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + + NGD  + I I +DITE+K   E I   A  D+LT +PNR +F  ++ T L+ +   
Sbjct: 590  VKDENGDTQQIIYIFSDITERKLFEEHIYNLAHHDSLTQLPNRVAFQLQMNTALERAKRS 649

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  VM ID+D +K IND  G  VGD +L  +  R    L+  D+++R  G+ F ++L
Sbjct: 650  -KTQMAVMFIDLDHFKMINDTSGHPVGDLLLQQVAERFKRALRKEDVISRFGGDEFTVLL 708

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
             +          A  +      P  L   E+ ++ASIG   +  +  +   ++ NA+ AM
Sbjct: 709  SNTRTDNATTVVARKLLACFYEPFKLPSSEVVISASIGIGVFPDNGDSVDSLMMNADSAM 768

Query: 682  YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK +G N  + +   ++ +  +R+ ++ DL  A+E  E  L Y P     +  I+G E
Sbjct: 769  YRAKEKGRNCFQFYTKEMNQYAQERLELELDLRKALERDEFVLHYQPQFDP-NGRIIGCE 827

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            ALI+W HP  G +S  EF+ +AE   +I  I  ++++        W  Q   P + I +N
Sbjct: 828  ALIRWQHPDKGLLSPGEFINMAEITGLIVPIGKWVIDTACMQHKMWLSQ-GYPALNISVN 886

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++ +  L ++L E ++  I+ +  +PS ++L  +ES++M N E +   L  +  +GI ++
Sbjct: 887  LSGRQFLHHDLLETVKNAITTSGITPSCLELELTESIMMVNVEETIRTLNAISSLGIHMS 946

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S +S L   P + +K + S + G    ++ +AI++SII MA  +  T+IA+ 
Sbjct: 947  IDDFGTGYSSMSCLKRFPVNKLKIDQSFVRGLPQDKEDVAIVKSIIVMAHALNLTVIAEG 1006

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     ++ L    C+  Q  + + P+    I + L+ 
Sbjct: 1007 VETLEQLEFLKSSRCEEFQGYYFSRPILAADIEQYLQA 1044


>gi|311692959|gb|ADP95832.1| sensory box/FOG: EAL domain/GGDEF domain containing protein [marine
            bacterium HP15]
          Length = 1162

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 149/584 (25%), Positives = 275/584 (47%), Gaps = 20/584 (3%)

Query: 390  VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRD---RVTTTPDIATILGLASG 443
            V A            E+Q +    V  S + V   +        V   P  + I G  S 
Sbjct: 583  VFAIAKDITKRVRTEEQQRIMQRSVEASSNAVVITNARDPGFPVVYVNPAFSQITGFGSE 642

Query: 444  SMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G    +L       +D +  +  +          +    R    D    W  + + P
Sbjct: 643  EVEGQSLGFLIGEGSEDDDIERIKVAVREHRS-----VSVTMRSYRKDGAPFWYQLFLSP 697

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +  G++  ++ + NDI+E+K+  E +   A  D LTG+ NR  F DRL    +L+   
Sbjct: 698  VRDDEGEVTHFVAVINDISEKKEQDEEMAYQATHDLLTGLANRSLFNDRLKHDFELAKRH 757

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                  V+ ID+D++K IND LG  VGD +LVS+  R+  L++  D LAR  G+ F ++L
Sbjct: 758  SQ-SMAVLFIDLDEFKPINDTLGHRVGDKLLVSVAERLNSLIRPSDTLARFGGDEFVLLL 816

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 +    + A  + + +A P  +   E+ ++ASIG A+ + S     ++L+ A++AM
Sbjct: 817  PDLEETGLAEEIAERILQELAKPHQIDNNELHISASIGIATNSHSSRFPEKLLQRADMAM 876

Query: 682  YHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK +G +  E +        S RV ++ DL  A++  +L L Y P++   D  IV LE
Sbjct: 877  YKAKQQGRDTYEIYSADLDEALSTRVTLRNDLQEAIKGDQLRLHYQPLVN-ADGSIVSLE 935

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W HP+ G+IS ++F+ IAEE   I  +  ++  +   D +   ++       + +N
Sbjct: 936  ALVRWQHPQKGSISPADFIPIAEETGQIVPLGKWVTRKACEDALILIERGLRMGC-MAVN 994

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++            ++ ++ +T   P  ++L  +E ++M +   ++ +L  LR +G+   
Sbjct: 995  LSPMQFHRPNFLNVLRQILEETGLPPEYLELELTEGILMKDTGGAKNILNDLRGMGVKTA 1054

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S   YL  +P D +K + S +   T  EK  A+ + +I +A+ +   ++A+ 
Sbjct: 1055 IDDFGTGFSSFGYLRELPVDKIKIDRSFVEDVTSCEKDAAVCKGVITLARELGMRVVAEG 1114

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +  E   + L + GC   Q  + A P+  + ++  ++E    ++
Sbjct: 1115 VETEEQYRYLAKHGCTGFQGYYFAKPMALDELIVWVEENAGGLR 1158



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 9/186 (4%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            I   +     +DN +       GL+    LI    + H+      +  +    +R    
Sbjct: 423 LIARALPRFDAIDNQLPVAIFFFGLMFTHQLILSRSLSHIRHEQSKTLAL--SEQRFRSL 480

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTIL 468
              + D V+  D         P     LG+ +  + G  R++   I+         + + 
Sbjct: 481 YDHNPDAVFSLDADGRYRDINPATKHSLGVPNCELRG--RHFTERINKETVPEGDLKEVF 538

Query: 469 DSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++    RG  + +F +  R + ++     +   P+   +  I     IA DIT++ ++ 
Sbjct: 539 RAYTEATRGYPRTDFSMSLRTSGHEVRHFDVTFLPIVIQD-RIDGVFAIAKDITKRVRTE 597

Query: 527 EGILCN 532
           E     
Sbjct: 598 EQQRIM 603


>gi|226941282|ref|YP_002796356.1| hypothetical protein LHK_02365 [Laribacter hongkongensis HLHK9]
 gi|226716209|gb|ACO75347.1| Predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Laribacter hongkongensis
            HLHK9]
          Length = 1092

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 148/576 (25%), Positives = 269/576 (46%), Gaps = 17/576 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +Q V +     + +    +          + V+  D     +   P    I G A+G 
Sbjct: 521  GSVQDVTSLRRAERELMLSAQ----VFEHGSEAVFITDASHRILRVNPAFEAITGYAAGE 576

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            + G   ++          +     +  +  + GR Q E   R    + ++    +  + +
Sbjct: 577  VLGLTPDFRCVSSPGG-TSISQRWE--LAEQTGRWQGEIVCRRRSGEHYYEWSALSVVRH 633

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +NG +L +IG  +DI+  K +    L  A  D LTG+PNR    DRL  +L+    +   
Sbjct: 634  ANGSVLYFIGQFSDISAVKAAEARALRLACFDPLTGLPNRSLLFDRLQEVLNREPHNG-- 691

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
               V+  D+D++K IND LG  +GD VL  + RR+   ++  D + R  G+ F ++L   
Sbjct: 692  --AVLFCDLDRFKNINDSLGHTLGDAVLKEVARRLVARVRPGDTVCRYGGDEFVLVLPGL 749

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            ++ + +   A  +   ++ PI L   ++ VT S+G A +         +L++A+ A+YHA
Sbjct: 750  SDCVVLEQLAEQLLADVSSPILLDGLDLRVTPSLGVAVFPRDGNDCDALLRHADAALYHA 809

Query: 685  KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K RG N    F        S+ + I+  L  A+E  E  L Y P + +    +VG+EAL+
Sbjct: 810  KSRGRNTYRFFTREIDDRVSEYLHIEHGLRSALERGEFELHYQPQVDMAFGRVVGVEALL 869

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W HP+ G IS   F+ IAEE  +I  I ++++    R  + WR      P+ + +N++ 
Sbjct: 870  RWKHPEQGMISPVRFVPIAEETGLIVPIGMWVIREACRQAMLWRRAGLR-PMTMAVNLSG 928

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +      + E +   ++ +   P  +++  +ESV+M + + +  +L  LR  G+++ +DD
Sbjct: 929  RQF-SRSVIEAIDEALADSGLDPRWLQVEVTESVIMEDTQEAYTVLEALRARGLTVAVDD 987

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S L+YL   P D +K + S +      E    I+ +II MA N+   ++A+ +  
Sbjct: 988  FGTGYSSLAYLKRFPIDKLKIDRSFIRDIDLDEDNPVIVDAIIGMAHNLRIKVLAEGVET 1047

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                  L + GCD +Q   V+ P    ++ + + ER
Sbjct: 1048 RAQWDYLRQQGCDEVQGYLVSRPQPAAALGQWMLER 1083



 Score = 95.8 bits (237), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 2/150 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +       + +     R       SGD+ +D+D+   R+   P    +LGL   
Sbjct: 145 VVTFVDITRERQRQESLQRMEARWQALFETSGDVAYDFDVATRRLELAPAWMQMLGLGR- 203

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
                 ++WL  +    RD+    L + +         E+ +      +  +  R R   
Sbjct: 204 MPDDHYQDWLERVDPQVRDDVEAALCAHLQGETADYSVEYPLLHESGDWLHVFERGRVYQ 263

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +++G  LR  G+  D++ Q  + E     
Sbjct: 264 RDADGKPLRMHGVIIDLSRQLHAEEAQRRL 293



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 7/144 (4%)

Query: 394 GYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              S+ + ++  ++ L   V  S D +   D        +P +  +L + +  + G    
Sbjct: 278 IDLSRQLHAEEAQRRLEGIVAASSDAMAFIDTEGLVGFASPALCHLLSIGTQEVRGRQLE 337

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L   + N R+     ++  +  R   L+ +  +         +     P  N+ G ++ 
Sbjct: 338 ELLAAYANRRE-LMQGIEGALAGRN--LRMQTWLTLPGGGVRCLESSFDPYRNTEGQVVG 394

Query: 512 YIGIANDITE--QKKSLEGILCNA 533
            + +  D+T+  +K  L      A
Sbjct: 395 AVCVLRDMTDNARKTLLFEQAERA 418



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 37/146 (25%), Gaps = 20/146 (13%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-----HGPIRNWLPYIHI- 458
           E    A+    + V         V   P+   I+ + S  +      G            
Sbjct: 32  EYYRTALAHLNEGVLFVSPSGCMVPGNPEAVRIIAVPSAELSHVTREGEWETLTENGEPL 91

Query: 459 --NDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSN-SNGDILRYIG 514
              DR   R              +    +R     +  W+ +   P+      + +  + 
Sbjct: 92  AMADRPGARACFA-----GETVERQVVGMRRPGAAEVQWLRMNAAPVYQPEQQEPVGAVV 146

Query: 515 IANDITEQKKSLE-----GILCNAFQ 535
              DIT +++  E          A  
Sbjct: 147 TFVDITRERQRQESLQRMEARWQALF 172


>gi|254417659|ref|ZP_05031392.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196175551|gb|EDX70582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 776

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 157/597 (26%), Positives = 275/597 (46%), Gaps = 38/597 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444
           V + +       Q +     +       + + ++        ++  P +A + G +    
Sbjct: 171 VARDITERKQAEQALKQAEAKYRSIFENALEGIFQSTADGHYISANPALARLYGYSSPDE 230

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +   + +    ++++     R      +        +E +V   D    W+    R + +
Sbjct: 231 LMVRLTDIEHQLYVD--PQRRAEFSRLLQENDAVADFESQVYRKDGSVIWIAENARAVRD 288

Query: 505 S-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G++L Y G   DITE K + + +   AF D LTG+PNR  F+DRL+  ++ +     
Sbjct: 289 MMTGELLYYEGTVEDITEHKLAKDQLQTRAFYDTLTGLPNRALFMDRLSHTVERAKRHPT 348

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  ++ +D+D++K +ND LG  VGD +L+ + RR+   L+  D +ARL G+ F I+L  
Sbjct: 349 YRFALLFLDLDRFKVVNDSLGHLVGDQLLIGIARRLESCLRTEDTVARLGGDEFTILLED 408

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS--------SKITSSEMLK 675
             +       A  +++ +A P NL   E+   AS+G              +     ++L+
Sbjct: 409 IEDIHHATRVAERIQQELAAPFNLDGHEVFTGASVGIVLSREIRKEGDITNYDCPEDLLR 468

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A+ A+Y AK  G +  E F   +       + ++ +L  AVEN E  + Y PI+ L   
Sbjct: 469 DADTALYRAKALGRSRYEIFDLTMHQNALSVLQLETELRRAVENQEFEIYYQPIVSLSTH 528

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD------ 787
           +I G EAL++W HP  G +   EF+ +AEE  +I  +  +ML +  R +  W D      
Sbjct: 529 QIAGFEALLRWHHPSRGLVYPGEFIPMAEETGLIIPMGWWMLRQACRQLELWHDTVQESE 588

Query: 788 --QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q     + I +N++SK  L  EL E +  ++ +T   PS +KL  +ES ++ +PE + 
Sbjct: 589 LNQELAHQLTIYVNLSSKQFLQPELLEHLDKILHETHLHPSHLKLEITESCLLADPEIAE 648

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--------- 896
             L  LR   I L +DDFGT  S LSYL   P DT+K + SL++  +             
Sbjct: 649 ERLKELRDRQIGLCIDDFGTGYSSLSYLHRFPIDTIKIDQSLISNISIDVQGHCEAGMIN 708

Query: 897 -------AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   I+R+II +A ++   +IA+ +  +  + +L  + CDY Q     +PL  
Sbjct: 709 RTKGLPLQIVRTIIMLADSLGMKVIAEGVETKEQLTQLRLLDCDYAQGYLFQAPLDA 765



 Score = 39.9 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 378 IVILIGFTVIQH--VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +V LI     Q    +        + S             D ++  D     +   P   
Sbjct: 39  LVNLISTVAAQLGVAIERKQAEVALRSSEAELRALFAAMTDSIFVLDSQGCFLKIAPTNP 98

Query: 436 --TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              +L   +    G   +   +      D F T +   +     RL  E+ +   D +  
Sbjct: 99  DPRLLPENANEFVGKTLH--QFFAPTQADQFLTYIQEAIAT-SSRLNIEYSLTVRD-REV 154

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           W    I P    +      + +A DITE+K++ E  L  A
Sbjct: 155 WFAATISPTLEDS-----VVWVARDITERKQA-EQALKQA 188


>gi|313681964|ref|YP_004059702.1| diguanylate cyclase/phosphodiesterase with pas/pac and chase
            sensor(s) [Sulfuricurvum kujiense DSM 16994]
 gi|313154824|gb|ADR33502.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Sulfuricurvum kujiense DSM 16994]
          Length = 1172

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 149/631 (23%), Positives = 272/631 (43%), Gaps = 14/631 (2%)

Query: 330  GMKGYERAVLLIPAWILI-FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-- 386
              +    A     A +       +     +     N    P+    L  + + I F +  
Sbjct: 543  WHERAMTAGWKASAALPFHLFGEVVGAFTVYSYKRNAF-DPSSQELLKEMTMDISFAMEN 601

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
              H          +    +        +    W+ ++  + VT T + A I  +      
Sbjct: 602  FDHETNRALSEVRLHQTEQLLEEMSAIAHIGGWEINLKTNAVTWTKEAAQIFDMDPNDTI 661

Query: 447  GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              +   L   H    +  +T LD  +         E  +        W+ +   P+   N
Sbjct: 662  -TLETGLSVFHGEWHEKVKTALDQAIYQATSS-DLELYIVTLKGNEKWIRVISTPLV-RN 718

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G+++   G   DIT QK + E +   A  D LTG+PNR    DR+   + ++  ++    
Sbjct: 719  GEVIDIHGSVQDITVQKTTEEKVHWLAHFDPLTGLPNRTLLNDRVDYAIHIA-ENNQSSL 777

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             ++ +D+D +K IND LG  VGD++LV +  RI  +L   D L+R  G+ F I+L S  +
Sbjct: 778  ALLYVDLDHFKYINDTLGHHVGDEMLVQVASRILSVLNEADTLSRQGGDEFMILLPS-AD 836

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            S   A  A  + + ++ P  L   +++VT SIG A +       +E+ + A+ AMY AKH
Sbjct: 837  SDHAAHVAEKLVEYVSQPYQLQNHDLSVTLSIGIALYPIDGTNLTELSQAADAAMYRAKH 896

Query: 687  RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G N    F           + ++  L  A+  +++ L Y P + +  ++++G EAL++W
Sbjct: 897  DGRNCYRFFAPEIQERSTRNLELENALRSALVRNQMELYYQPQLSIETQQLIGAEALLRW 956

Query: 745  DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             HP  G IS SEF+ IAEE   I AI  ++L +    +  W D+    P  + +N+++  
Sbjct: 957  THPTLGAISPSEFIPIAEESGQIIAIGEWVLRQALGQLKLWIDEGL-EPFIMAVNLSAIQ 1015

Query: 805  LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
              D  L   +  ++ +    P  ++L  +E +   NP ++  ++  L   GI +++DDFG
Sbjct: 1016 FRDPNLVSQIVGILDELHLPPQYLELELTERIASENPLQAIDIMNTLHDHGIRMSIDDFG 1075

Query: 865  TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
            T  S L+YL       +K + S +       +   I+ +I+ MA ++    IA+ +    
Sbjct: 1076 TGYSSLNYLKKFRVYKLKIDQSFIHDIADNAEDQTIVNTIVNMAHSLNMITIAEGVETAE 1135

Query: 923  DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  L + GC  +Q  + + P+   +    +
Sbjct: 1136 QLDLLRQNGCKEVQGYYFSKPIPAETFKTFV 1166



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 12/193 (6%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL----------ATGYFSQGIF 401
                       + +I          I  L+G+   QH                 +  I 
Sbjct: 248 TLNIAPANGWHTSWVILALQGTLGFFISFLMGYIAKQHFELRNHRRILEKRVQERTSEIL 307

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                    +    D++W  +     +   P      G     + G       ++  +  
Sbjct: 308 ETKNHLHTLLDTIPDLIWLKNSNGIYLLCNPPFERFFGAKEEEIVGKSDY--DFVDKDLA 365

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D FR      +      +  E+     D     +     PM +  G++L  +GIA DITE
Sbjct: 366 DFFRQKDRIVMQSNMPAINEEWVTFRDDGHRALLETVKTPMMDEKGNLLGVLGIARDITE 425

Query: 522 QKKSLEGILCNAF 534
           +      I   + 
Sbjct: 426 RHNHEVRIEQLSL 438


>gi|326790142|ref|YP_004307963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
 gi|326540906|gb|ADZ82765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
          Length = 949

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 155/564 (27%), Positives = 271/564 (48%), Gaps = 11/564 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    +R    +    +++W++++       T     ++G +S ++          +
Sbjct: 390 KEALLISEKRYKTTLNAIEEVIWEYNVKTKTFFATEKWEELVGCSSNNIK-IFNVIKDTL 448

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +  + F  +L   +  R      E  ++    +  W++ +   + + NG + + IGI 
Sbjct: 449 EPHHIEVFMLVLKGCIEGRNDSFSQELYMKN---EHRWLLCKGHVVRSENGKLDKLIGIL 505

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + E +   AF D LTG  N+Q+F++ L T L  S  +      ++ ID+D +
Sbjct: 506 TDITDNKANEERVRKLAFFDVLTGCLNKQTFMESLETWL--SPGEAIKDAALLFIDLDDF 563

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KKIND LG  +GD +L  + + +  ++     ++R  G+ F I   S ++  +I +   +
Sbjct: 564 KKINDTLGHEMGDKLLNYVAKVLRHIIPQDSFISRFGGDEFVIFKTSVSDLGEIQEMVYS 623

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      PI +  ++I +T SIG A +     +   +LKNA+ AMY AK  G N    + 
Sbjct: 624 ILNIFQDPIRIDGKDIHITCSIGIALYPLDGTSGDILLKNADTAMYKAKDNGKNSYSFYA 683

Query: 697 VSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +S    +  +  L  A+  + LYL Y PII L   + V  EAL++    + G IS 
Sbjct: 684 PDMSKSLDRKLLVEGALREAIGKNTLYLQYQPIIELKTGKTVAAEALLRLKDDELGFISP 743

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ IAEE  +I     +++E   R++  +        + I IN++S  + D    + +
Sbjct: 744 GEFIPIAEETGLIIPTGDWVIENALRELS-YYRLVGYESLSITINVSSLQMKDRNFIDKL 802

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++      P  IKL  +ESV M N E+S  L   ++K+GI L LDDFGT  S L+YL 
Sbjct: 803 KLMVQNAKIPPEFIKLEVTESVFMENVEKSINLFREIKKMGIKLALDDFGTGYSSLNYLR 862

Query: 875 YIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            IP D +K + S +   T  R    I+ SII MA  ++  ++A+ +  E  +  L   GC
Sbjct: 863 SIPLDILKIDKSFIDEITTSRVLSEIVDSIIGMAHTLDILVVAEGVESEEQLSILKEKGC 922

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D+IQ    + PL  N + + L+E 
Sbjct: 923 DFIQGYFFSKPLMPNQLEERLQEE 946


>gi|217975287|ref|YP_002360038.1| PAS/PAC and Chase sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217500422|gb|ACK48615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica OS223]
          Length = 1215

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 161/607 (26%), Positives = 280/607 (46%), Gaps = 22/607 (3%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               +  +    A+     L+    G  +I  ++      +   +     +     SG+ +
Sbjct: 619  KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------YIHINDRDNFRTILDSFV 472
               D     V      + I G +   + G    +L        I        R  L+   
Sbjct: 679  TIMDANDIIVDVNSAFSQITGYSREEIIGKNCRFLEAERTDKGIDPQ----VRAALEQ-- 732

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                G  Q E   R          + +  + +  G +  YIG   DI+E+K S E I   
Sbjct: 733  ---TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFL 789

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D+LT +PNR S   RL  ++   A   + +  VM ID+D +K IND LG  VGD +L
Sbjct: 790  AHHDSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLL 848

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + RR+  ++   D +ARL G+ F + L S+ N  ++A  A A+R  ++    +  + +
Sbjct: 849  LEVARRLKNIVGDTDTVARLGGDEFVVAL-SDTNHDEVASLAEALRSGLSQTYIINNQAL 907

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
              + SIG + + +   +   ++KNA++AMY AK  G N+ + F  +     ++R  I+  
Sbjct: 908  HSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETG 967

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L   + N EL L Y P I +   ++V +EAL++W HP++G ++   F+ IAEE+ MI  I
Sbjct: 968  LRQVLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPI 1027

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++LE     + +WR       + + +N+++  L  + +   +  ++ K       ++L
Sbjct: 1028 GQWVLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHKLGKGALEL 1086

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ESV M  PE++  LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 1087 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1146

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    AI  + I M+  +  T++A+ +  E  +  L+ MGCD +Q  + + PL    
Sbjct: 1147 IESDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLAAEE 1206

Query: 949  ILKLLKE 955
              + ++ 
Sbjct: 1207 CFRFIQR 1213



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +H +     AVL+   + L  +  +  ++         ++       +   V      + 
Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + +     F   +    +R       +    V         V   P    + G +   + 
Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLDDGQFVAINPAFEAMTGYSLDEL- 584

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +  W   +         T     +   R    Y+      + Q   + +    ++ ++
Sbjct: 585 NQLDPW--DLTPKRYQLSETEQLERLKQTRRYGPYQKHYVHKNGQLVAVRLNGALVTGAD 642

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
           G+ L  + I  DITEQ++++  +   A
Sbjct: 643 GEQL-ILFIVEDITEQERTVARVNLLA 668


>gi|66047869|ref|YP_237710.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258576|gb|AAY39672.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 828

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 154/561 (27%), Positives = 265/561 (47%), Gaps = 14/561 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGKTPRLLAS 313

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 314 GQH--DSAFYAAMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVA 369

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K++   +   A  D LTG+PNR  F  RL   L  S    +L   V+ +D+D
Sbjct: 370 VFADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIA 488

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +    + P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 489 NKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L+   + G EALI+W+HP +G +
Sbjct: 549 YTCDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E
Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGIWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L +DDFGT  S LSY
Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 727

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LT  
Sbjct: 728 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 787

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GC+ IQ   ++ PL       
Sbjct: 788 GCEQIQGYIISLPLDAEEFRA 808



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +          G + 
Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++   D      +++    +   +     R+R  +       +  +P
Sbjct: 181 KYCLDHSTFDLGIWV---DLSERSKLIERMKKHGFVK-DMRVRIRNNNGDIRLCELSSQP 236

Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             ++  +      + I  DITE ++  E +   A 
Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +       + +       D +    +     +          G+    + G     L  
Sbjct: 10  REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANESFVERTGIPLDEVIGKTPTELNL 69

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    ++  +P    +  I   + 
Sbjct: 70  WAVPGIGPKVLLQL-----QTGDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122

Query: 515 IANDITEQK------KSLEGILCNAFQ 535
           I  DIT+ K      +  E     AF 
Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149


>gi|95930949|ref|ZP_01313678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132958|gb|EAT14628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 927

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 151/552 (27%), Positives = 262/552 (47%), Gaps = 10/552 (1%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R   A+  S   +    +    V    D     G +       +     +I    R+   
Sbjct: 379 RLLQAIDQSPICILMATVDGTPVYVNQDFTRRKGFSLEECKNRLNPINIFI----RERVN 434

Query: 466 TILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            + ++            E + R  D + +W  I I P  + N     ++ I  DITE+K+
Sbjct: 435 ALGNNDNKYTSTDPWTEERQARTKDGKMYWERISIAPAYDLNQKCSHFVFIGEDITEEKE 494

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +       A  DNLTG+ NR    DRL  ++  +    +L   VM++D+D++K IND LG
Sbjct: 495 NALHFEYLATHDNLTGLANRLLLHDRLDQLVLKAKRSHSLVF-VMLLDLDRFKVINDSLG 553

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L  +  R+ + ++  D +ARL G+ F ++    ++       A  + + ++ P
Sbjct: 554 HDCGDRLLQLVAERLLDAVRESDTVARLGGDEFVVVFQETDSLADALHVAELILQKLSNP 613

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSD 703
            NL  R++ VTAS G + +    I+S E+L++A++AMY AK  +    V    +      
Sbjct: 614 FNLDGRQLLVTASAGISYYPDHGISSLELLRHADVAMYKAKETQSDICVFEPSMDQHLLQ 673

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + ++ DL  A+  +EL + Y P +    E++VGLEAL++W  P  G IS   F+ +AE+
Sbjct: 674 SMELEADLRQAITRNELQVYYQPKVDASSEKVVGLEALLRWFSPDRGMISPGVFIPLAEQ 733

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  I L+++E + R +  W DQ     + + +N+++K     +L E +  +  +   
Sbjct: 734 NGMILDIGLWVIEEVCRQLRQWCDQGYSV-VPVAVNLSAKQFQSLDLPEQVSTIFDRYQI 792

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             S  +   +ES++M NP  +  ++  L+K+GI L +DDFGT  S L+YL  +P D +K 
Sbjct: 793 DSSWFEFELTESMIMQNPVSAIRIMEDLKKLGIRLAVDDFGTGYSSLNYLRRLPLDYLKI 852

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +          A+  SII +AK++    IA+ +     +  L    CD+IQ  +  
Sbjct: 853 DRSFIDDVTMDFSADAVATSIIGIAKSLGMQTIAEGVETSAQLMFLRDNQCDFIQGFYFY 912

Query: 942 SPLGFNSILKLL 953
            P+    I K L
Sbjct: 913 KPMPAADISKQL 924



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435
           ++++++ F V   +       Q +    E+  +    S   +   D    + V     +A
Sbjct: 226 VVLLVLRFQVQDRLRREDEVKQELGRSEEKYRVLFEESLIGICVADFESAEIVECNNYLA 285

Query: 436 TILGLASGSMHGPIRNWLPYIHIN---DRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQ 491
            ++      + G  +     +H +   D+            G   G +    ++   + +
Sbjct: 286 HLVERHPDELIGQPQ---RILHPDSEIDKSTGVSITFQKHHGEDFGTI-LNSQLITKNGK 341

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              + ++   +  S G+     G+  D+TE+ K  +     
Sbjct: 342 LRDVEVQGGVV--SFGEKEYQYGLFLDVTERNKYEQQSYRL 380


>gi|146294937|ref|YP_001185361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella putrefaciens CN-32]
 gi|145566627|gb|ABP77562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella putrefaciens CN-32]
          Length = 1216

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 163/607 (26%), Positives = 281/607 (46%), Gaps = 22/607 (3%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               L  +    A+     L+    G  ++  ++      +   +     +     SG+ +
Sbjct: 620  KHYLHKNGQSVAVRLNGALVTGANGEQLVLFIVEDITEQERTVARVNLLAQVFQQSGEGI 679

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY------IHINDRDNFRTILDSFV 472
               D     V      + I G +   + G    +L        I        R  L+   
Sbjct: 680  TIIDANDIIVDVNTAFSQITGYSREDIIGKNCRFLEAKRTDKSIDPQ----VRAALEQ-- 733

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                G  Q E   R  D       + +  + + +G +  YIG   DI+E+K S E I   
Sbjct: 734  ---TGFWQGEVWDRHKDGYDFPKWLMMSVVRDESGAVSHYIGSFTDISERKMSEERIHFL 790

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D+LT +PNR S    L  +   +    + +  VM ID+D +K IND LG  VGD +L
Sbjct: 791  AHHDSLTLLPNRLSLQSSLEIVFGEALASQS-QIAVMFIDMDHFKNINDTLGHHVGDQLL 849

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + RR+  ++   +I+ARL G+ F ++L S+ N  ++A  A A+R  ++    +    +
Sbjct: 850  LEVARRLKNIVDNNEIVARLGGDEFVVVL-SDTNHDEVASLAEALRSGLSQTYIIDNNSL 908

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
              + SIG + + +   T   ++KNA++AMY AK  G N+ + F  +     ++R  I+  
Sbjct: 909  HSSPSIGISLFPTDGNTVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLITERQHIETG 968

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L   + N EL L Y P I +   ++V +EAL++W HP++G IS   F+ IAEE+ MI  I
Sbjct: 969  LRQVLANEELQLHYQPQIDIRTGQVVSVEALVRWQHPEFGLISPDRFISIAEEIDMIIPI 1028

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++LE     + +WR       + + +N+++  L  + +   +  ++ K       ++L
Sbjct: 1029 GQWVLETAMAQLAAWRAA-GATRLRMAVNLSAHQLRKDTIVADITNVLLKHQLGKGALEL 1087

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ESV M  PE++  LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 1088 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1147

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    AI  + I M+  +  T++A+ +  E  +  L+ MGCD +Q  + + PL    
Sbjct: 1148 IETDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGYYFSKPLPAEE 1207

Query: 949  ILKLLKE 955
              + ++ 
Sbjct: 1208 CFRFIQR 1214



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGL 440
              + + +  +  F   +    +R       +     +   D     V        I G 
Sbjct: 522 TMALSKEIARSQAFQATLVESEQRYRNLFDKAPVGHVLKQVD-NGRFVAINQAFTDITGY 580

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRI 499
           +   +   +  W        + +    L+     RR G  Q  +     + Q   + +  
Sbjct: 581 SLDEL-NQLDPW-ELTSKRYQLSEAEQLERLKQTRRYGPYQKHY--LHKNGQSVAVRLNG 636

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             ++ +NG+ L  + I  DITEQ++++  +   A
Sbjct: 637 ALVTGANGEQL-VLFIVEDITEQERTVARVNLLA 669


>gi|167589118|ref|ZP_02381506.1| hypothetical protein BuboB_27536 [Burkholderia ubonensis Bu]
          Length = 761

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 156/585 (26%), Positives = 273/585 (46%), Gaps = 21/585 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLA 441
            +++ V+      Q +    E    A+  S + ++  +            P    I G A
Sbjct: 189 ALLEQVIERKLAEQALRLKHE----AIEASINGIFLINNRLPDNPIEYVNPAFERITGYA 244

Query: 442 SGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           S  + G  RN    +  + D+   R IL+     R G      R    D    W    + 
Sbjct: 245 SDEVKG--RNIRCLLGEDQDQPGIRAILEVMRDGREG--HEVLRSYRKDGTPFWSECYVA 300

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +++ +I  ++ I NDI+E K+  E +   A  D LT +PNR   +DR+   +  +  
Sbjct: 301 GIRDNSEEITHFVVILNDISEAKRLEELLHNRANYDTLTKLPNRLLMMDRIAEAVAKAQR 360

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D   R  V  +D+D++K IND LG   GD +L  + RR+ E ++  D +ARL G+ F I+
Sbjct: 361 DHG-RVAVAFVDLDRFKFINDSLGHDAGDVLLQEIARRLCECVRESDTVARLGGDEFVIL 419

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +    +   ++     +   I  P+ L   E  VT SIG + +      +  +LKNA+ A
Sbjct: 420 MEVAGD---VSPVMQRIVDRIGQPVTLAGEEHAVTCSIGVSVYPQDGRDAETLLKNADTA 476

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N  + F+            ++ DL  A+E  E  L Y P+I L    I+G 
Sbjct: 477 MYQAKEIGRNSFQFFKDDMNARLNERILLETDLRHAMERGEFELYYQPVIELRGGTIIGF 536

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP  G +  S F+ IAE+  +I  I  ++L +      +W        + +L+
Sbjct: 537 EALIRWHHPSKGLVLPSSFIPIAEQSDLILRIGEWVLRQACTQNQTWVRAGIST-VPVLV 595

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++++     ++   +Q ++ +T  +P  ++L  +E++ M  P R+   + +L+ IG+ +
Sbjct: 596 NLSARQFDRQDIVRLVQRVLLETGLAPGLLELEITETLSMQAPRRTIEFIEKLKAIGVKV 655

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S L+YL   P D +K + S M+     +  +AI  ++I M  ++  T++A+
Sbjct: 656 AIDDFGTGYSNLTYLKKFPVDKLKLDSSFMSEITSNKDSMAIASAVIDMGHSLNLTVVAE 715

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +  E  +  L   GCD +Q    +  L  +    L++    LV+
Sbjct: 716 GVEQESQLSLLCARGCDLMQGHLFSPALPADEFAALVRSGRKLVR 760


>gi|304412077|ref|ZP_07393687.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica OS183]
 gi|307305972|ref|ZP_07585718.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica BA175]
 gi|304349627|gb|EFM14035.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica OS183]
 gi|306911465|gb|EFN41891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica BA175]
          Length = 1215

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 160/607 (26%), Positives = 279/607 (45%), Gaps = 22/607 (3%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               +  +    A+     L+    G  +I  ++      +   +     +     SG+ +
Sbjct: 619  KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------YIHINDRDNFRTILDSFV 472
               D     V      + I G +   + G    +L        I        R  L+   
Sbjct: 679  TIMDANDIIVDVNSAFSQITGYSREEIIGKNCRFLEAERTDKGIDPQ----VRAALEQ-- 732

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                G  Q E   R          + +  + +  G +  YIG   DI+E+K S E I   
Sbjct: 733  ---TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFL 789

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D+LT +PNR S   RL  ++   A   + +  VM ID+D +K IND LG  VGD +L
Sbjct: 790  AHHDSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLL 848

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + RR+  ++   D +ARL G+ F + L +  N  ++A  A A+R  ++    +  + +
Sbjct: 849  LEVARRLKNIVGDTDTVARLGGDEFVVALSN-TNHDEVASLAEALRSGLSQTYIINNQAL 907

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
              + SIG + + +   +   ++KNA++AMY AK  G N+ + F  +     ++R  I+  
Sbjct: 908  HSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETG 967

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L   + N EL L Y P I +   ++V +EAL++W HP++G ++   F+ IAEE+ MI  I
Sbjct: 968  LRQVLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPI 1027

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++LE     + +WR       + + +N+++  L  + +   +  ++ K       ++L
Sbjct: 1028 GQWVLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHQLGKGALEL 1086

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ESV M  PE++  LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 1087 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1146

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    AI  + I M+  +  T++A+ +  E  +  L+ MGCD +Q  + + PL    
Sbjct: 1147 IESDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLAAEE 1206

Query: 949  ILKLLKE 955
              + ++ 
Sbjct: 1207 CFRFIQR 1213



 Score = 58.0 bits (139), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 17/213 (7%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +H +     AVL+   + L  +  +  ++         ++       +   V      + 
Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + +     F   +    +R       +    V         V   P    + G +   + 
Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLEDGQFVAINPAFEAMTGYSLDEL- 584

Query: 447 GPIRNW------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +  W               +  +         R G  Q  +     + Q   + +   
Sbjct: 585 NQLDPWDLTPKRYQLSEPEQLERLKQT------RRYGPYQKHY--VHKNGQLVAVRLNGA 636

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ ++G+ L  + I  DITEQ++++  +   A
Sbjct: 637 LVTGADGEQL-ILFIVEDITEQERTVARVNLLA 668


>gi|160877450|ref|YP_001556766.1| PAS/PAC and Chase sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862972|gb|ABX51506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica OS195]
 gi|315269652|gb|ADT96505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica OS678]
          Length = 1215

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 279/605 (46%), Gaps = 22/605 (3%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               +  +    A+     L+    G  +I  ++      +   +     +     SG+ +
Sbjct: 619  KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------YIHINDRDNFRTILDSFV 472
               D     V      + I G +   + G    +L        I        R  L+   
Sbjct: 679  TIMDANDIIVDVNTAFSQITGYSREEIIGKNCRFLEAERTDKNIDPQ----VRAALEQ-- 732

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                G  Q E   R          + +  + +  G +  YIG   DI+E+K S E I   
Sbjct: 733  ---TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFL 789

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D+LT +PNR S   RL  ++   A   + +  VM ID+D +K IND LG  VGD +L
Sbjct: 790  AHHDSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLL 848

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + RR+  ++   D +ARL G+ F + L S+ N  ++A  A A+R  ++    +  + +
Sbjct: 849  LEVARRLKNIVGDTDTVARLGGDEFVVAL-SDTNHDEVASLAEALRSGLSQTYVINNQAL 907

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
              + SIG + + +   +   ++KNA++AMY AK  G N+ + F  +     ++R  I+  
Sbjct: 908  HSSPSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETG 967

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L   + N EL L Y P I +   ++V +EAL++W HP++G ++   F+ IAEE+ MI  I
Sbjct: 968  LRQVLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPI 1027

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++LE     + +WR       + + +N+++  L  + +   +  ++ K       ++L
Sbjct: 1028 GQWVLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHKLGKGALEL 1086

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ESV M  PE++  LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 1087 EITESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKD 1146

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    AI  + I M+  +  T++A+ +  E  +  L+ MGCD +Q  + + PL    
Sbjct: 1147 IESDPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLPAEE 1206

Query: 949  ILKLL 953
              + +
Sbjct: 1207 CFRFI 1211



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +H +     AVL+   + L  +  +  ++         ++       +   V      + 
Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + +     F   +    +R       +    V         V   P    + G +   + 
Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLDDGQFVAINPAFEAMTGYSLDEL- 584

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +  W   +         T     +   R    Y+      + Q   + +    ++ ++
Sbjct: 585 NQLDPW--DLTPKRYQLSETEQLERLKQTRRYGPYQKHYVHKNGQLVAVRLNGALVTGAD 642

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
           G+ L  + I  DITEQ++++  +   A
Sbjct: 643 GEQL-ILFIVEDITEQERTVARVNLLA 668


>gi|300114166|ref|YP_003760741.1| GAF/PAS/PAC sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299540103|gb|ADJ28420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosococcus watsonii C-113]
          Length = 946

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 154/574 (26%), Positives = 271/574 (47%), Gaps = 12/574 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +L   +  Q   +   R  L       + + V   D     V        I G+    + 
Sbjct: 367 ILDAYHNDQRRKNAESRLRLTAKVFESTVEGVIITDTQAYIVDVNEAFTHITGITRAEIM 426

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G     L  +                    G+ Q E   +  + + + + +    + NS 
Sbjct: 427 GQH---LSRLQPKQGKPISFQRIRRSIKSTGQWQGELWSQRKNGELYPLWVTANAVRNSQ 483

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             I  ++ I +DIT +K++ + +   A  D LTG+PNR  FLDRL   +  +   D+ R 
Sbjct: 484 EAITHFVAIFSDITLRKQTEQRLYHLAHHDALTGLPNRSLFLDRLEHAIHHAQRHDH-RL 542

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D++K +ND LG  +GD +L  +  R+   ++  D +ARL G+ F +I+ +  +
Sbjct: 543 AVLFIDLDRFKFVNDTLGHPIGDSLLKQVAERMRLNVRAEDTIARLGGDEFTVIIENFTD 602

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +  ++  A  + ++   P N+  +E+ ++ASIG + +      ++ +L++A+ AMY AK 
Sbjct: 603 TSALSLIAQKIIEACKEPFNIKGKELFISASIGISLYPEDGHEANMLLQHADAAMYRAKK 662

Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG +  + F        ++++ ++  L  A+   E  L Y PII L    IV +EALI+W
Sbjct: 663 RGKSCYQFFTTDINTAATEQLALENLLREALARKEFQLYYQPIIDLESGAIVSVEALIRW 722

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P+ G IS   F+ +AEE  +I  +  ++L         W       PI I IN+++  
Sbjct: 723 LDPQLGLISPDTFIPLAEETGLILPLGEWVLLTACTQASIWNQCNPY-PIRIAINLSAHQ 781

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L   +  E +  ++ KT   P  ++L  +ES+++   E S   L  L+K+G  L+LDDFG
Sbjct: 782 LEQADFSERVSKILKKTALLPHHLELELTESMLINRMESSLKTLNTLKKMGCRLSLDDFG 841

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P DTVK + S +          AI  ++  MA +++  +IA+ +    
Sbjct: 842 TGYSSLAYLKRFPIDTVKIDRSFVQDISIDPDDAAITTAVTTMAHSLKRKVIAEGVETRE 901

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  L ++  D  Q   ++ PL  + + +LLKER
Sbjct: 902 HVDFLNKINVDEAQGYFISHPLPASDLSQLLKER 935


>gi|312623566|ref|YP_004025179.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
            [Caldicellulosiruptor kronotskyensis 2002]
 gi|312204033|gb|ADQ47360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor kronotskyensis 2002]
          Length = 1016

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 147/569 (25%), Positives = 275/569 (48%), Gaps = 11/569 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            S+ +  + E+    V    D +W+ D    ++     +     +           WL + 
Sbjct: 446  SEMLQEEKEKYKFLVENVSDCIWEIDFNEKKIEFYGRLKDQFDIDVIKSKNDFSAWLEFF 505

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +DR      L   +     ++++E R+R     + W+   ++ + N  G   + I + 
Sbjct: 506  HEDDRSTVFKKLQDAILLHEEKVEFESRIRDKHGNWRWISSHVQILYNEEGKPEKIIAVN 565

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D T +K+    I   A+ D LTG+PNR+ F +RL ++++ +   +  +  V++IDID +
Sbjct: 566  IDWTAKKEYEHRIEYIAYYDTLTGLPNRKLFEERLESLIEKAEA-EKTQGAVVLIDIDNF 624

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633
            K IND+ G   GD+ L+++T+++ E L         AR+ G+ F +IL       ++ + 
Sbjct: 625  KDINDLYGHEAGDEYLIAVTKKVLEYLNSIKLDTFFARVGGDEFAVILDGLAKKEEVIEV 684

Query: 634  AIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               +       I + + E  I  +ASIG + +     +  E+ +N ++A+  AK  G N 
Sbjct: 685  CTKLLGIFESEIYIQKIEGCIFTSASIGVSFYPDDGKSVKEIFRNVDMALSSAKENGKND 744

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + F   +      ++ I++ L  A+E  +  L Y P+I L + EI  +EAL++W  P  
Sbjct: 745  FQIFMPFMLMKNFKKIEIEKSLKKAIEADQFELYYQPVINLRNMEIHSVEALLRWHLPGK 804

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G IS  EF+ +AEE  +I  I   ++E+   D+  W ++     + I IN++++      
Sbjct: 805  GIISPLEFIPVAEESGLIVRIGEMVIEKAFSDLKEWENKGIDY-LHIAINLSTRQFKTKF 863

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
              + +Q  I +   +P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S 
Sbjct: 864  FEKMVQKQIERYGVNPQKISFEITETGAVENFDVSLKILSFLCQLGIKFLIDDFGTGYSS 923

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L YL  +P   VK + S ++    +++  AI+  II MA  ++  +IA+ +  + +++ L
Sbjct: 924  LIYLRRLPIGGVKIDRSFISEIELSKESRAIVEGIILMAHKLDLKVIAEGVETKRELEIL 983

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +GCD+ Q    + P+    I KLL ER
Sbjct: 984  KEIGCDFAQGYLFSKPVPKTEIEKLLIER 1012



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 2/164 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           N  I  + +  L++I+      +           +G  +  +   L    +  IV   ++
Sbjct: 258 NRQILLSALYLLIIILFATSVIIFVMTRINRGLERGKQAYEKYAQLLAENANAIVLTLNL 317

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             + +        I G  S  + G    W+     + R  +   L   +   +    +E 
Sbjct: 318 KGEIIYFNKFAEQITGYKSEEVVGKK--WVDIFIPSHRREYIENLFKRIAEVKILNDHEN 375

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +   +    W++     + +S  +    I    DIT+ K++ +
Sbjct: 376 EIVTKNGDIRWILWNNTLIESSYLNEPLIISTGLDITQIKRTQQ 419


>gi|312963435|ref|ZP_07777917.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
            WH6]
 gi|311282241|gb|EFQ60840.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
            WH6]
          Length = 1247

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 153/576 (26%), Positives = 267/576 (46%), Gaps = 12/576 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +  +       Q +    ++ +     + + V   D  ++        + I G +     
Sbjct: 664  MLTIARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITGYSEAEAL 723

Query: 447  G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   R     +H  D   +  +         G  Q E   R  +   +   + I  + N 
Sbjct: 724  GQTPRLLASGLH--DSAFYAAMWHQLTAQ--GHWQGEISNRRKNGALYPSWLTISAVRNP 779

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            +  I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL   L+        +
Sbjct: 780  DQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFENRLQAALNGHQETGK-Q 838

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F I+L    
Sbjct: 839  GAVLFLDLDRFKHINDSLGHPVGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 898

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            ++   A  A  +     +P    E E  ++ASIG + +       + ++KNA+ AMY +K
Sbjct: 899  HANDAAYLANKLLACFTLPFQAGEHEFFISASIGTSLYPQDGTDVATLVKNADAAMYRSK 958

Query: 686  HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G N VE +     +   +RV ++ +L  A+E  EL L Y P   L  + ++G EALI+
Sbjct: 959  AKGRNRVEHYTRDLTAQAKERVALEHELRRAIERDELSLYYQPKRSLKTQALIGAEALIR 1018

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP +G++    F+ +AEE  MI  I  ++LE+  R + +W+   +     + +N+A  
Sbjct: 1019 WHHPTFGDVPPEHFIALAEENGMILQIGDWVLEQACRQLHAWQGTYHDFG-SLSVNLAGA 1077

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L    L   ++ L+     +P  ++L  +E+ +M   E +  +L +L+ +G+ L +DDF
Sbjct: 1078 QLRHPNLLTRIEQLLRDYHLAPGCLQLEITENFIMSQAEEALEVLHQLKHLGVQLAIDDF 1137

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P D +K + S + G        AI+R+II +  +++ TIIA+ +   
Sbjct: 1138 GTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGVENT 1197

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKER 956
                 L   GC+ +Q   V+ PL         L+ R
Sbjct: 1198 AQQAFLAAEGCEQMQGYIVSLPLPPELFAASFLRRR 1233



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +    L+  ++ IVI I   +   +       Q + S        V     I W+
Sbjct: 267 LLMYGLPTVLLLSTVLAIVIRINRRLSSEISRRVALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             I        +P    +LG            W   IH  D     T         R   
Sbjct: 327 ASISDFTYSYVSPHAEDLLGYPRAHWL-IPGFWRNIIHPADLTRAETYCYRETRANRDH- 384

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD +  W+   +  +   +G      G+  DI+E K++ E
Sbjct: 385 SVDYRVITADGRCLWVRDIVSLI--EHGHEPVLRGLMIDISEAKRTEE 430



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 13/182 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +    +    +I  A      +  I++    I  +  T    Q + +  E+ + A   S 
Sbjct: 515 LRSNGQAFTGLISAAPFQLDTVEAIVVVVRDITQLKET---QQQLQTSEEKFAKAFHASP 571

Query: 416 DI-VWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           D  +         +      + I G A+  S+         ++ +N+R +   ++     
Sbjct: 572 DGLLLSRQHDGLLIEVNEGFSRITGFAAATSLDQSTLELGIWVDLNERKHMLELM----- 626

Query: 474 YRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +R G ++ +   +R AD Q     +  RP+   + D    + IA DITE++   E +   
Sbjct: 627 HRDGFVRDFICHIRRADGQIRLCEVSSRPLPIGDDDC--MLTIARDITERQLMQEKLQQA 684

Query: 533 AF 534
           A 
Sbjct: 685 AT 686


>gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 994

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 262/569 (46%), Gaps = 12/569 (2%)

Query: 397 SQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454
            + +     R + L   G G+ +   D  R+ +      +TI G  +  + G   R    
Sbjct: 287 ERKLAEAEHRLADLVFTGIGEGICITDAKRNILRINDAFSTITGYQADEIVGQNPRLLKS 346

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H      F   +   +    G  Q E   R  D       + I  + ++ G    YIG
Sbjct: 347 GVHS---PAFYAEIWKTIDQY-GNWQGEITNRHKDGSLVTEWLSISSLRDTTGTASHYIG 402

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D++E++ + E I   +  D LT +PNR  F DRL   L  +   +     ++++D++
Sbjct: 403 IFSDLSERQAAAERIQYLSSYDTLTELPNRHLFDDRLNQALLTARRFERGT-ALILLDLN 461

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           +++ IND LG   GD++LV +TRR+   ++  D + R +GN FG ++ + ++       A
Sbjct: 462 RFRLINDTLGPPAGDEILVEVTRRLKLQVREGDTVGRRAGNEFGFVMANLSHERDALALA 521

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             M  +I++P ++  + + +TASIG + +  +      ML++A+ A+  AK  G N    
Sbjct: 522 QRMLDAISVPFSVAGQSVAITASIGISVFPKNGENGEAMLRSADAALLRAKQSGRNTFSF 581

Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +           +  +  L  A+   E  + Y P + L    ++G+EAL++W+    G I
Sbjct: 582 YSPEMDADAARRLSIESALRDALARDEFCVHYQPQVSLDSGHMIGMEALLRWNSALLGPI 641

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ IAEE  +I  I  ++L        +W D   + P+ + +N++ +     +L  
Sbjct: 642 SPVEFIPIAEETGLIMQIGDWVLRTACHQTKAWLD-LGLLPLHVAVNLSPRQFRQADLPA 700

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   ++++      ++L  +ES  + + + +  +  +L+ +GI L+LDDFGT  S L+Y
Sbjct: 701 QVAHALAESGLPAGALELEITESAFIDDIDDAVAMCSKLKSLGIKLSLDDFGTGYSSLAY 760

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +   PFD +K + S +          AI  + I M +++  +++A+ +  E     L   
Sbjct: 761 VSRFPFDKIKIDQSFVRDIVNNPVNAAIASAAIVMGRSLNLSVLAEGVETEAQAAFLRSR 820

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPL 959
            CD IQ    + PL       LL    PL
Sbjct: 821 RCDAIQGYLFSRPLPPEEFAPLLLSCKPL 849



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGER-----------QSLAVLGSGDIVWDWDIVRDRVTT 430
           +     Q +LA       +  + ER            +LA+  SG  +W+ D VR+R   
Sbjct: 140 LEVRRAQWLLANQKAW--LEQEVERRIAENTQLDRHLTLALERSGFGIWEHDPVRNRNRW 197

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           +  +  +LG         +   +  IH  DR      + + +  R   L  EFR+R  D 
Sbjct: 198 SEGLRQMLGYEQE--PEQLAESMNLIHPEDRPAVEAQVTASLRDRNSILIGEFRIRHHDG 255

Query: 491 QFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            + W+  R R +  +  G     IG   DITE+K +     
Sbjct: 256 GWRWVESRGRIVEFDEAGQPTLMIGTMLDITERKLAEAEHR 296


>gi|218437596|ref|YP_002375925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
 gi|218170324|gb|ACK69057.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
          Length = 1471

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 146/587 (24%), Positives = 285/587 (48%), Gaps = 6/587 (1%)

Query: 374  GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            G+          ++  +       Q +     R   AV+ +   +       + +     
Sbjct: 885  GIEFAGRQARLVLVNDITEQLKAQQKLQESENRFRRAVIDAPLPILIHAEDGEIIQVNHA 944

Query: 434  IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
               + G     +   I +W    +   ++  R+++D          + EF +     +  
Sbjct: 945  WTELTGYTHEDI-PTIADWTEKAYGERKEIVRSVIDELYKIDGKVEEGEFTITIKTGETR 1003

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
                   P+     +    + +A DITE+K++ E +   A  D LTG+PNR   LDR+  
Sbjct: 1004 IWNFSSAPLGRLADNRRLIMSMALDITERKQAEEQLRHAAVHDQLTGLPNRILLLDRIEQ 1063

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             +  +  ++     ++ ID+D++K +ND LG  VGD +L ++  ++   ++  D +AR  
Sbjct: 1064 AIKRTQQEEKYLFALLFIDLDRFKVVNDSLGHWVGDQLLGAIADKLKACVRPMDTVARFG 1123

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+ F I+L +  +  +    A  +   +     L  ++  ++ SIG    +S + ++SE+
Sbjct: 1124 GDEFVILLENLTSRTEATKMAQQITDELRSSFCLQGQDFFISVSIGITFPSSYEESASEL 1183

Query: 674  LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            L+NA++AMY AK +G      F   +    +  + ++ +L LA+E  EL + Y PI+ L 
Sbjct: 1184 LRNADIAMYRAKEKGRARYTIFDSKMHIQATRLLELETNLRLALEREELIVHYQPIVSLT 1243

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-N 790
              +++G EAL++W+HPK G IS  EF+ IAEE  +I  +  ++L    R + +W+ +   
Sbjct: 1244 TGKLLGFEALVRWEHPKKGLISPGEFIPIAEETGLIIPLGEWVLLESCRQMKAWQKEFSG 1303

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            +  I + +N++ K L    L   +++++ +T      +KL  +ES++M N E    LL +
Sbjct: 1304 LDKIRVSVNLSGKQLEYPHLINCLESILKQTGLEGKNLKLEITESMLMNNKEVVSDLLLQ 1363

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKN 908
            ++   I +++DDFGT  S LSYL Y+P DT+K + S +   T+  +   I+ +II +A +
Sbjct: 1364 IKGKNIQISIDDFGTGYSSLSYLHYLPVDTLKIDRSFVNRMTQLGENFEIVEAIINLAHH 1423

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++  ++A+ +  E  IK+L ++GC+  Q    + PL    +    ++
Sbjct: 1424 LQMDVVAEGVETEQHIKQLKQLGCESGQGYFFSKPLDSQKVTSWFEK 1470



 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 126/369 (34%), Gaps = 36/369 (9%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
             T  + +     ++       ++ I  +++  V         +    ER  LA+ GSGD
Sbjct: 496 TKTGEIIDCKWYNSVQYDQSGEILSI-LSLVLDVSEQKRAEAALQVSQERLQLALEGSGD 554

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +W+W++    +         LG            W   +           L  ++  + 
Sbjct: 555 SIWEWNLQTGEIYCDQSWWQKLGYEPDHETMSYEWWRSQVAPEFLPIHEASLQDYLAGKT 614

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             L  E++++++   + WM  R + ++ +  G+ L+ +G   DITE K+  E +      
Sbjct: 615 EYLTLEYKIQSSSGDWVWMSARGKSVANDEEGNPLKIVGTHRDITESKEIEEELKQQ--- 671

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGIAVGDDVLVS 594
                        + L TI+D       +   +  ID +  +  +N+       + +L  
Sbjct: 672 ------------GELLQTIVDY------IPVMLAYIDPNYNFLWVNEEF-----ERILGW 708

Query: 595 LTRRIGELLKFPDILARL--SGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLERE 651
               I  L    +ILA+L    +    ++    ++ +   DF   +R    +  +    +
Sbjct: 709 SLEEIKNL----NILAQLYPDPDERQYVMNYIQSAEEKWEDFKTRLRNGTTIDTSWANVK 764

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
           ++  A IG     + +    E L+ +E       +   N +  + V +     V      
Sbjct: 765 LSNGAIIGIGQDITVRKHIEEALRESEQKYRLLFYANPNPLWVYDVKTLAFLEVNQAAIE 824

Query: 712 CLAVENSEL 720
                  E 
Sbjct: 825 HYGYSREEF 833



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 5/148 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             +       + +     +    V     +++ +   + ++  +  + +ILG ++  +  
Sbjct: 272 AQIQERQAVEKALMESEAKYERLVERLPAVIYQFSPTKGKLYCSSYVKSILGYSTDEIDL 331

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           P   W+  IH  D    + ++  FV  +    + E+RV+ A  Q+HW++ R      ++ 
Sbjct: 332 PWL-WINSIHPEDLPKVKEMIQEFVQGKN--FEIEYRVKDAQGQWHWILDRSIGRQAADQ 388

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQ 535
           + +   G+A DITE KK+ +  L  A Q
Sbjct: 389 E-MMIEGVAIDITETKKT-QMALQQAHQ 414



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 43/143 (30%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V   +  T      +    +  +  V  S   V +WD        +     I G     
Sbjct: 394 GVAIDITETKKTQMALQQAHQCLTFHVDNSPLGVIEWDNDYRVKRWSSQAEKIFGWKEEE 453

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G       +++  D D     +   +     R     R      +            +
Sbjct: 454 VVGKGWQEWQFVYEEDLDLIVAKVSEIIKKETSRHFVTNRNYTKTGEIIDCKWYNSVQYD 513

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
            +G+IL  + +  D++EQK++  
Sbjct: 514 QSGEILSILSLVLDVSEQKRAEA 536



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 3/166 (1%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           I    +  ++++V +     +  +       Q +     R    V    +++  +     
Sbjct: 93  IINGALLTMMIVVTVGRQLYLGQLNILKKIKQALKKSRSRYRAIVEEQTELICRFRPDGT 152

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                             +   I  +LP I   D+      L S    +R  + +E RV 
Sbjct: 153 LTFVNEAYYRYFEKTPEYLLEKI--FLPLIPFPDQQQVLDNLKSLNQQKRV-ITHEHRVI 209

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  +  W     R + +  G I+ +  +  DITE K+    +   
Sbjct: 210 ISSGEMRWHQWTNRAIVDRQGKIIEFQAVGRDITELKQIETALREL 255


>gi|89098032|ref|ZP_01170918.1| hypothetical protein B14911_20928 [Bacillus sp. NRRL B-14911]
 gi|89087195|gb|EAR66310.1| hypothetical protein B14911_20928 [Bacillus sp. NRRL B-14911]
          Length = 974

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 141/563 (25%), Positives = 261/563 (46%), Gaps = 11/563 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +        + D V+  D+  +  +  P      G     + G     L 
Sbjct: 410 MLNNSLSVSEQYYRSLFDNNADFVYSTDMQGNFTSINPAFKRNFGFNEKEVIGKPA--LR 467

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D    R      V  +      E  +++ +   +   ++  P++   G+      
Sbjct: 468 FIDSRDVARVRRHFYRTVNGKEQYYNLE--IQSKNGARNLYELKNIPIT-VEGEPAGIYC 524

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  +ITEQK+  + +   A+ D  TG+PNR  F++ L  +L  +         V+ +DID
Sbjct: 525 IGRNITEQKRIEQEMTQLAYYDKDTGLPNRLKFMEELDDLLQKAKKKKR-PLAVLFMDID 583

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L  +  RI  +L       R SG++F +IL  E +S ++   +
Sbjct: 584 RFKLINDSLGHYAGDQILRQIAGRIEAILPPGSFFGRFSGDKFTLILAKEADSSRVTKLS 643

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++I+ P+   E+E  +T SIG + +         ++KNA++AM  +KH+GGN +  
Sbjct: 644 NHILQAISSPVYYGEQEFFITGSIGASLYPGDGHEKETLMKNADIAMNRSKHQGGNRLTY 703

Query: 695 FRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +         + ++ +  L  A++  E +L Y P+  L    I G EALI+W+HPK G +
Sbjct: 704 YSTEMNEQTLLKLELESYLRKALQKKEFFLCYQPLTNLETGAIYGSEALIRWNHPKLGLV 763

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ +AEE  +I  I  ++L+   R    W ++     + + +N++           
Sbjct: 764 SPGDFIPLAEETGLINEIGHWVLQTACRQTKEWHNKGLG-SLTVSVNVSVHQFQQPGFVH 822

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T+  P  + L  +ES ++ N E S L++  L++ GI + +DDFGT  S LSY
Sbjct: 823 KVLQVLKETMLEPQFLVLELTESSMLRNMENSILVIQELQRNGIRVAIDDFGTGYSSLSY 882

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++P D +K + S +         IAI+ +II M   +   ++A+ +     ++ L  +
Sbjct: 883 LKHLPIDALKIDRSFIDNLRSGSPDIAIVNAIITMGLGLHVKVVAEGVETAEQMRLLKDL 942

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
            C + Q   +  PLG     + L
Sbjct: 943 KCHFAQGFFIHRPLGAEQFEEEL 965


>gi|78223826|ref|YP_385573.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
 gi|78195081|gb|ABB32848.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Geobacter metallireducens GS-15]
          Length = 821

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 166/815 (20%), Positives = 345/815 (42%), Gaps = 37/815 (4%)

Query: 157 AVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSS 216
             V     ++      +  +    ++    + +    +++G ++ LA  L +  M     
Sbjct: 24  DEVAVYFVLAGAMWLNLLFF--ALWRRRNEANSREALLVLGFSAGLARELFMLAMAIGQK 81

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI-------IFL 269
            L               +D   L            +    + + ++++ +          
Sbjct: 82  AL--------------MVDPRHLHAFFP---PVEHVLSGVATVIVAAAFMRYLTGDFFLA 124

Query: 270 FMYLHWNRWHAKVGYIT-FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328
             YL          YI  FS  A        S +       +     A ++++ T+ +  
Sbjct: 125 RNYLGIGITLTLSCYIATFSWWADYITTNPASKFGQTWCDVLFHTIAALLLVFPTWHLFR 184

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
           H        +        +      + +A  +R +           L+ I +L    + +
Sbjct: 185 HRTGWLRNIICFALVCFFLTETLKLVDIAYGERYEYIFTPIRRSFNLIGIYVLGYVYIRE 244

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                   +  +    +R    V      +   D     V     +  +    +  + G 
Sbjct: 245 QESRRRRATAKVVESEKRYRTLVENVNMGISLIDGNNRIVMNNGYLEKMFRKNAEKLTGR 304

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              +  + + ++  +    +++    R    + E R+   D +   + +   P+ N  G 
Sbjct: 305 FC-YQEFENRDECCDNCLGVEAMTTGRAVSREVE-RILD-DGEPSGLRLSAFPVFNEQGK 361

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             ++I +  DIT++K++ E I   A+ D+LTG+PNR   +DRL+  +  +     +   +
Sbjct: 362 ATKFIKVVEDITDRKRAEEKIRRLAYYDSLTGLPNRPLMMDRLSQAIRHARRHGEV-VAL 420

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +ND  G  VGD +L  +  R+    +  D LARL G+ F II      + 
Sbjct: 421 LFLDLDRFKDVNDSQGHRVGDRLLQEVAARLSGCTRESDTLARLGGDEFVIIAPGVRAAT 480

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             +  A  +  ++A P  L  + + +  SIG   + S       +L+ A++AMY AK RG
Sbjct: 481 DASLLADKILAALAEPFTLDRQTLHIATSIGIVLFPSDGGNGEMLLQRADMAMYAAKDRG 540

Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           GN    F   +++   +R  ++ED+  A+ N E +L+Y P +     ++VG+EAL++W+H
Sbjct: 541 GNSYRFFSAEMNTRAVERHELEEDMRQALTNGEFFLMYQPQVNTGTWKVVGVEALVRWNH 600

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G I  S F+ +AEE   I  +  ++LE   R    W+     PP+ + +N+ ++   
Sbjct: 601 PRKGVILPSRFIPVAEETGFISKLGRWVLEEACRQGAQWQHDGL-PPLQMGVNLCARQFT 659

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             E+   +  ++ KT      +++  +E+++M + E +   LG+L+ +G+ L +DDFGT 
Sbjct: 660 HEEIVGTVSDVLQKTGLPSELLEIELTETMLM-DSETAVSTLGQLKALGVRLAIDDFGTG 718

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S  +YL + P D +K + S +    + R   AI+ +I+ +A+++   ++A+ +  E  +
Sbjct: 719 YSSFNYLKHFPLDRIKIDQSFIRDIGQSRGNGAIIEAIVAVARSLGPEVLAEGVETEEQL 778

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           + L  + C  IQ  + + PL  + + +L++E  P 
Sbjct: 779 RYLMSITCADIQGFYFSRPLLPDDVSRLIRESLPG 813


>gi|229592969|ref|YP_002875088.1| putative signaling GGDEF/EAL domain-containing protein [Pseudomonas
            fluorescens SBW25]
 gi|229364835|emb|CAY52875.1| putative signalling GGDEF/EAL domains containing conserved protein
            [Pseudomonas fluorescens SBW25]
          Length = 1247

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 151/574 (26%), Positives = 266/574 (46%), Gaps = 12/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +  +       Q +    ++ +     + + V   D  ++        + I G +     
Sbjct: 664  MLTIARDITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITGYSEAEAL 723

Query: 447  G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   R     +H  D   +  +         G  Q E   R  + + +   + I  + N 
Sbjct: 724  GQTPRLLASGLH--DSAFYAAMWHQLTAQ--GHWQGEISNRRKNGELYPSWLTISAVRNR 779

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
               I  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL   L+        +
Sbjct: 780  EQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGK-Q 838

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              V+ +D+D++K IND LG  +GD +L  +  R+ E L+  D +ARL G+ F I+L    
Sbjct: 839  GAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 898

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            ++      A  +      P    E E  ++ASIG + +       + ++KNA+ AMY +K
Sbjct: 899  HASDAQHLANKLLACFTPPFQAGEHEFFISASIGTSLYPEDGTDVATLVKNADAAMYRSK 958

Query: 686  HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G N VES+     +  ++RV ++ +L  A+E  EL L Y P + L  ++++G EALI+
Sbjct: 959  AKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLYYQPKLSLATQQLIGAEALIR 1018

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP +G++    F+ +AEE   I  I  ++LE+  R + +W+   +     + +N+A  
Sbjct: 1019 WHHPTFGDVPPEHFIALAEENGTILQIGDWVLEQACRQLHAWQGTFDDFG-PLSVNLAGA 1077

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L    L   ++ L+      P R++L  +E+ +M   E +  +L +L+ +G+ L +DDF
Sbjct: 1078 QLRHPGLLGRIEQLLRDYGLDPGRLQLEITENFIMSQAEEALEVLHQLKHLGVQLAIDDF 1137

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P D +K + S + G        AI+R+II +  +++ TIIA+ +   
Sbjct: 1138 GTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGVENP 1197

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
                 L   GC+ +Q   V+ PL         L+
Sbjct: 1198 AQQAFLAAEGCEQMQGYIVSLPLPPALFATTFLR 1231



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 7/169 (4%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +    L+  ++ IVI I   +   +       Q + S        V     I W+
Sbjct: 267 LLLYGLPAVLLLITVLAIVIRINRRLSSEISRRVALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVRDRVT--TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
             +  D      +P    +LG            W   IH  D               R  
Sbjct: 327 ASV-TDFTYSYVSPHAEELLGYPRAHWL-IPGFWRNIIHPADLLRAEAYCYRETRANRDH 384

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              ++RV  AD +  W+   +  +   +G      G+  DI+E K++ E
Sbjct: 385 -SIDYRVITADGRCLWVRDIVSLI--EHGHEPVLRGLMIDISEAKRTEE 430



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGL-A 441
             V++ +       Q + +  E+ + A   S D  +         +      + I G  +
Sbjct: 540 VVVVRDITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQRDGLLLEVNDGFSRITGFNS 599

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF--RVRAADNQFHWMIIRI 499
           + S+     +   ++ +N+R +   ++       R     +F   +R  D Q     +  
Sbjct: 600 AASLDQSTLDLGIWVDLNERKHMLELMA------RDGFVRDFICHIRRNDGQIRLCELSS 653

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           RP+   + D    + IA DITE++   E +   A 
Sbjct: 654 RPLPIGDDDC--MLTIARDITERQLMQEKLQQAAT 686



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 17/152 (11%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASG 443
            ++  +       + +    ++ +       DI+    +     +         +GL + 
Sbjct: 417 GLMIDISEAKRTEEALQLSEQKFASVFQQCPDILVIARLSDGCLLEVNKAFEDQVGLKAE 476

Query: 444 SMHGPIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            + G     L       I  +                      E      + Q    +I 
Sbjct: 477 DVIGKTATALNIWGIPGIGPDLLKRV---------QTTSIRNLEMPFLRNNGQAFTGLIS 527

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             P      +    + +  DIT+ K++ + + 
Sbjct: 528 AEPFQLDTTEA--IVVVVRDITQLKETQQQLQ 557


>gi|322421398|ref|YP_004200621.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geobacter sp. M18]
 gi|320127785|gb|ADW15345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 855

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 154/611 (25%), Positives = 279/611 (45%), Gaps = 17/611 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           + ++ R   ++    +  G  +    +    I+ +       + +    E+    V    
Sbjct: 236 LRLSARDGRNVAVEVVCTGYRIDQTKVLQFNIRDITVRKNAEEALLKSEEQCRTIVSNIN 295

Query: 416 DIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           + V+           V  +P    I G      +     W   IH  DRD     L+S  
Sbjct: 296 EYVYSVRFEHGDIKSVYHSPKCLDITGYTPEDYYKDPLLWFTMIHEEDRDQVVQFLNSIF 355

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD---ILRYIGIANDITEQKKSLEGI 529
                +     R+   D    W++          G+   I R  G   DITE K++ E I
Sbjct: 356 AGE-DQEPIRHRIVHKDGTVRWILNNCAVQKTRKGERVAISRLDGFILDITEIKRAEENI 414

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR +   R+  +L ++         ++ +DID +K+IND +G  VGD
Sbjct: 415 FFLAHHDPLTRLPNRSTLYARIEQVLSVAQKSRR-NVALLFLDIDGFKQINDSMGHDVGD 473

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L S+ R++G+  +  D+++RL G+ F ++L        +A+  +   K I     L  
Sbjct: 474 RLLQSVARKLGDCTRSCDVVSRLGGDEFVVVLWDCG----VAETTMVAEKIINAGFPLPG 529

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
             +TVT SIG + +         +LK+A++AMYHAK  GGN+ E F    +    +R  I
Sbjct: 530 TNVTVTPSIGISVYPDDGRDYLALLKHADIAMYHAKKSGGNNFEFFTHKLNELAHERFAI 589

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + +L  A+E  E  L Y P + L+     G+EALI+W HP  G I   +F+ IAEE  ++
Sbjct: 590 EAELRRALEREEFVLHYQPKVDLITGRFSGMEALIRWQHPVRGLIMPEQFISIAEESGLL 649

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ +++  + R I  W+ Q     +   +N+++      +  E ++A + +T   P  
Sbjct: 650 HQISKWIIPTVCRQIQQWQRQGIR-SVSAAVNLSASFFQHRDFEETIEASLLETGIPPEC 708

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E+ +M +P+R    +  ++ +G+ L++DDFG   S LSYL  +P D +K + S 
Sbjct: 709 LELELTEATIMSDPQRVLGSMAAMKALGLQLSIDDFGIGYSSLSYLKKLPVDKLKIDQSF 768

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          A++R++I + ++++  +IA+ +     +  L   G +  Q  + + PL 
Sbjct: 769 IRNIARDSDNAAVVRAVISIGRSMQLKVIAEGVENASQLAWLQAEGSEEAQGYYFSRPLP 828

Query: 946 FNSILKLLKER 956
              +  LL +R
Sbjct: 829 VQKMTALLVQR 839



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 6/146 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLA 441
           G  +   ++      + +     R       + D +   D     +    P +  +LG A
Sbjct: 138 GSEIRLALIEITESEKALQVSEARYRGLFEAAKDGIMIIDSATGEIGDVNPFLIEMLGYA 197

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              M G  R W   +             + +  R      + R+ A D +   + +    
Sbjct: 198 RDEMVGR-RLWE--VPPFTAIAATETEFAVLQDRDYLHSDDLRLSARDGRNVAVEVVCTG 254

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
                  +L++     DIT +K + E
Sbjct: 255 YRIDQTKVLQF--NIRDITVRKNAEE 278


>gi|307822937|ref|ZP_07653167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307735712|gb|EFO06559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1045

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 145/614 (23%), Positives = 268/614 (43%), Gaps = 11/614 (1%)

Query: 350  WFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFSQGIFSDGERQS 408
              +     +     N   + A      + + I       +      +    +        
Sbjct: 435  GAVIGVFTLYAAEINAFDRSARDLLAEMAMDIDYALNSFEREAQRRHAESSLADSHHLLK 494

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTI 467
            + +  +   ++  D     +   P  A   G +    + G     L +   +  + +R  
Sbjct: 495  MIIDTAPMRIFWKDKELRYLGCNPAFAKDAGESVLQDVVGKDDYQLAW--KDQAEYYRAD 552

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                +     +L +E +    D    W+     P+ N   + +  +GI  DITEQK   E
Sbjct: 553  DRLVMDSNTPKLAFEEQQTTPDGTTIWLRTSKVPLQNEAKETIGVLGIYEDITEQKCIEE 612

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I   A  D LTG+PNR    D L   L L+   +     +M +D+D +K IND LG ++
Sbjct: 613  RIHYLANFDPLTGLPNRTQLNDHLKYALSLAKRSNG-HLALMFLDLDHFKDINDSLGHSI 671

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +L+ L +R+  +L+  D + RL G+ F ++L    +++  A  A  +  +IA    +
Sbjct: 672  GDALLIELAKRLRLVLRTEDTVTRLGGDEFILLLPGV-DAIGAAHVAQKLLDAIAGSYWI 730

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
               ++ +TASIG A + +  +    + K+A+ AMY AK  G      F           +
Sbjct: 731  ELYDLALTASIGIALYPADGVDLETLSKSADAAMYRAKQEGRQCYRFFTQEMQARSARNL 790

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             +   L  A+E  +L + Y P + + +  ++G EAL++W HP+ G +S +EF+ +AE   
Sbjct: 791  QLVNALHHALERDQLQVYYQPQVAMQNGHVIGAEALLRWQHPELGMVSPAEFIPVAEGSG 850

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I +I  ++L    R   +W D+    P+ + +N+++      +L E +  ++ +     
Sbjct: 851  LILSIGEWVLRSAVRQAKTWIDEGFG-PLIMAVNLSAVQFRHPDLPELITRILDEEGLPH 909

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
              ++L  +E V M NP+    ++  L + G+ +++DDFGT  S LSYL       +K + 
Sbjct: 910  EYLELELTEGVAMHNPQGVIAVMNNLHERGVRMSIDDFGTGYSSLSYLKKFKVYKLKIDQ 969

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +       +  AI+ +II +AK +    IA+ +     +  L   GCD +Q    + P
Sbjct: 970  SFVRDISTDPEDKAIVSAIISLAKGLGLKTIAEGVETAGQLAFLREQGCDEMQGYLFSKP 1029

Query: 944  LGFNSILKLLKERF 957
            +       LLK+ F
Sbjct: 1030 VPIEQFEALLKQGF 1043


>gi|171060372|ref|YP_001792721.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Leptothrix
           cholodnii SP-6]
 gi|170777817|gb|ACB35956.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 863

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 151/585 (25%), Positives = 275/585 (47%), Gaps = 10/585 (1%)

Query: 382 IGFTVIQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I  + +Q  L      +   +    E+  +    S +  +        +  +P    + G
Sbjct: 267 IELSRLQRCLEELVAQRTALLEKSEEKYRILAEYSPNWEYWVAPDGSHLYVSPACGDVSG 326

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +              IH +DR  +       V           R+R  D    W+   +
Sbjct: 327 YSPADFFADPALMASIIHPDDRTQWAAQQARAVPGEAS--ATVLRIRTRDGGERWLEHVV 384

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +P+ +  G +L   G   DIT+++++ + +     +D LTG+PNR  F + L   +  +A
Sbjct: 385 KPVFSPAGQLLGLRGSYGDITQRRQAEQQLDYVTHRDALTGLPNRALFTEFLDQAVQKAA 444

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  +++ I++D +K IN+ LG + GD +L+ + RR+ ELL   D +AR+ G+ F +
Sbjct: 445 HSRG-EFSLLFINLDGFKTINESLGRSAGDQLLIEVARRLRELLPGVDAVARVGGDEFNV 503

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I+  +   L I   A  +  +++    L  +   + A IG A + +    +  +L +A+ 
Sbjct: 504 IVEHDVAGLGIDLVAQRIINALSHSYQLGAQSAYIGACIGIAQYPADGPAAESLLNSADA 563

Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A++ AK +G N +  F         +R+ ++ DL  A++  EL L Y P + L    IVG
Sbjct: 564 ALHRAKAQGRNVLRFFSPELTIRARERLSLEADLRRALQQGELALHYQPQVDLRSGRIVG 623

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W HP+ G I+   F+ +AEE  +I  +  ++L      I  W D    P     
Sbjct: 624 VEALLRWRHPQRGWIAPGAFIPLAEECGLIIELGDWVLRAACEQIRHWSDAGVAPRQT-A 682

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI++  +    L + ++  ++ T  +P R++L  +ES VM   ERS  LL  LR +G+ 
Sbjct: 683 VNISAVQISSGGLLDTVRRTLAATGIAPDRLELEITESFVMFERERSFKLLADLRALGVQ 742

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL  +    +K + S +   T  R   +I++++I M  ++   +IA
Sbjct: 743 LSIDDFGTGYSSLAYLQQLEVHKLKIDISFVRNMTRNRGNASIVKAVIAMGHSLGLEVIA 802

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           + +        L  + CD +Q   V+ PL  + I +LL+   P+V
Sbjct: 803 EGVEEIEQAAHLLALQCDVMQGYLVSKPLPVDDITRLLESFEPIV 847


>gi|91775536|ref|YP_545292.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
 gi|91709523|gb|ABE49451.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
          Length = 722

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 153/582 (26%), Positives = 268/582 (46%), Gaps = 21/582 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +          V  S DI++  D           + T+LG    S+ G   +
Sbjct: 127 QNRSIHARLEESENLYRYLVNSSPDIIYTLDDSGHFTFINHRVETLLGYRRESLIGK--H 184

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIR-IRPMSNSNGD 508
           +   I+ +D D      +      R     E R++  D  +      I  I  + N+ G 
Sbjct: 185 YTEIIYSDDFDRASYAFNERRTGNRATRNIELRLKCKDLESDIRHFEINFITVVLNATGT 244

Query: 509 ----------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                          G+A DI+++KK  E I   A+ D LTG+PNR  F DRL   L+ +
Sbjct: 245 YGGTHESGTPFSGTYGVARDISDRKKVEEVITRQAYHDTLTGLPNRALFKDRLNVALNHA 304

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +   +  +M +D+D++K +ND LG   GD++L  + +R+   L+  D LAR+ G+ F 
Sbjct: 305 KRNQQ-QLAIMFLDLDRFKWVNDTLGHFYGDELLKHVAQRLSGCLRAQDTLARMGGDEFT 363

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L         +  A  +   +  P  L EREI +++SIG A +     T   ++K+A+
Sbjct: 364 LLLHDLQQPEDASLVAAKIVDELKRPFLLDEREIFISSSIGIALYPDHGDTIETLIKSAD 423

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMYH K RG N  + +  S        + ++ +L  A+E  ++ L Y P + +   +I+
Sbjct: 424 IAMYHVKWRGKNGYQYYEASMNAMFHKKLSMENELRRAIEKKQIMLHYQPQVDVETRKII 483

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           GLEAL +W HP+ G IS +EF+ +AEE  +I +++  +L    + +  W          +
Sbjct: 484 GLEALARWHHPELGIISPTEFIPLAEETGLIFSLSEMLLGEACKQMQLWEAAGL-LNFRL 542

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ + + +        + I      P   ++  +E++++ + E +   L  L K GI
Sbjct: 543 ALNVSPQLVEEESFVSKTLSYIQSHHLKPEFFEIEITENLLVRDLENTVAKLKALGKHGI 602

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914
            + LDDFGT  S LSYL   P   +K + S +        +  I+ +I  +AK  +  +I
Sbjct: 603 RIALDDFGTCYSSLSYLRQFPIHNIKIDKSFVGDINTHDESVPIITAISGIAKGFKLDLI 662

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +     +K L +MGC+ +Q    + PL   +I  LLK +
Sbjct: 663 AEGVETLQQMKTLHKMGCNIMQGYLFSKPLPAQNITTLLKRQ 704


>gi|257093231|ref|YP_003166872.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045755|gb|ACV34943.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 734

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 152/584 (26%), Positives = 266/584 (45%), Gaps = 23/584 (3%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                 +  + +        V  S DI++  D     +     +  +LG     + G   
Sbjct: 143 REHALMTVRLENSERLHRFLVEQSPDIIYTLDKKGHFIFVNGRVHGLLGYTREELLGK-- 200

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR-IRPMSNSNG-- 507
           ++   +H +D+++ R   +      R     E R++   ++      R I  + ++ G  
Sbjct: 201 HYSTIVHPDDQEHARFAFNERRIGDRASTNVEIRLQTKTHRVRHFENRTIVAILSAQGLY 260

Query: 508 ----------DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                       +   G+A DIT++KK+ E I   AF D LTG+PNR  F DRL   L  
Sbjct: 261 AAAHDGPATRHFMGTSGVARDITDRKKAEETIAFQAFHDLLTGLPNRVLFKDRLAVALTQ 320

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +      R  VM IDID++K +ND  G   GD++L S  +R    L+  D LAR  G+ F
Sbjct: 321 ARRKGK-RLGVMFIDIDRFKLVNDTYGHHEGDELLKSFAQRARSCLRSGDTLARQGGDEF 379

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L    +    A  A  +   +  P  +   +   T SIG + +  S  T   +L+NA
Sbjct: 380 TVLLPDLTSGEDAAVIAAKVLAEVKRPFRIAGLDFFTTVSIGISLFPDSGETPETLLRNA 439

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS-ELYLVYHPIIRLMDEE 734
           ++AMY  K RG N    +         +   ++ DL  A+E   +  L Y P IR     
Sbjct: 440 DIAMYQIKGRGKNGYLQYAPEMHSGHSMRITLESDLRAALEGGDQFELHYQPQIRFSQGL 499

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            +G+EALI+W HP+ G ++   F+ +AEE  +I A++ ++L+R    +  WR Q     +
Sbjct: 500 TIGMEALIRWRHPQHGLMAPDTFIPLAEETGLIVALSDWVLDRALGQLAVWRRQ-GFTSL 558

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + IN++ KD   N+L E +   ++        I +  +E+++M   E++  ++ +LR  
Sbjct: 559 QLAINLSPKDFERNDLPERLVGRLAAHAIPADAIDIEITENLLMKEAEKNIDIVKQLRGC 618

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---AILRSIIPMAKNIET 911
           G+ + +DDFGT+ S L+YL   P +++K + S +     +     AI+ +I  +A +   
Sbjct: 619 GLRVAIDDFGTRYSSLNYLRRFPINSIKIDQSFVRDLNPQNQSSTAIIHAISCIAHSFGL 678

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++A+ +  E   K L+ + CD +Q    + PL        L  
Sbjct: 679 RVLAEGVETEAQRKLLSTLDCDDMQGFLFSRPLAAAEFEDFLTA 722


>gi|192360753|ref|YP_001982450.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190686918|gb|ACE84596.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 595

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 266/563 (47%), Gaps = 12/563 (2%)

Query: 403 DGERQSLAV--LGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHIN 459
             E   LA     S D+++  D     +     +  ++G      + G           +
Sbjct: 22  SMEAFLLAALADNSPDLIYAKDTRGRFIFLNKTLMAVMGAQDLQDVLGKTDFDFNT--PD 79

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  N+     + +   +  +  E  V      +  W++    P+ N  G  +  +GI  D
Sbjct: 80  NAQNYYQDDQTVIQSGQPLINREEPVVDRQSGRIRWLLTSKFPVFNDTGKTIGLVGIGRD 139

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+K+S E I   A  D+LT +PNR  F   L   ++ +      +  V+ ID+D++K 
Sbjct: 140 ITERKQSEEQIQYLATHDSLTALPNRFMFSKLLAVAIESARRHQR-QLAVLFIDLDRFKN 198

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L+++  R    L+  DI+ RL G+ F I+L    +  + A  A  + 
Sbjct: 199 INDTLGHDAGDQLLITMANRFRTCLRTSDIVGRLGGDEFVILLPELESHDQAARVAQKIL 258

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +   P+++  +E  VTASIG   +         ++KNA++AMY AK  G N+ + +   
Sbjct: 259 SAAIQPLDVHGQECRVTASIGICLYPEDAEDEQALMKNADIAMYRAKEEGKNNYQFYSPD 318

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+M++ +L  A+E  E +L Y     L   +I G+EAL++W HP+ G IS + 
Sbjct: 319 LKVRSLERLMLENNLRKALERHEFFLHYQAKRNLKTGKIAGVEALVRWQHPELGTISPAH 378

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  ++L       + W+ Q   PPI I +N++++   D+ L   +  
Sbjct: 379 FIPLAEETGLIVHLGRWVLRAACTQGVIWQQQGL-PPICIAVNLSARQFFDDNLINDIAN 437

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + ++  +P  +++  +E ++M + ER+  +L  ++ +G+ L +DDFG   S L+++   
Sbjct: 438 ALRESGLAPELLEMEITEGMIMQDAERAIRILTGIKALGVRLAIDDFGVGYSSLAHIKRF 497

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P DT+K + S +       +  AI  +II M K +  T+IA+ +  +     L    CD 
Sbjct: 498 PIDTLKVDSSFIRDIPANREDRAITEAIIAMGKTLSLTVIAEGVETQEQENFLRDSACDQ 557

Query: 935 IQDSHVASPLGFNSILKLLKERF 957
            Q  + + P+      + +    
Sbjct: 558 TQGYYFSKPVSPEEFTRFMLAHM 580


>gi|254417547|ref|ZP_05031285.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196175645|gb|EDX70671.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 709

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 143/574 (24%), Positives = 274/574 (47%), Gaps = 17/574 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            + + +         +  + +     +  S   +   D   + +        +LGL    
Sbjct: 126 GIARDITQRKQAEVQLCPENDLLQGIMQTSIAAITVVDTQGNIIFANARSQQVLGLTQSE 185

Query: 445 MHGP--------IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +           I ++       +    +      +   +     +  +  AD    ++ 
Sbjct: 186 LVERRYNCPTWQITDFQGGPFPEE----QLPFQQVMVTGQPVFDVQHAIEWADGTRKYLS 241

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +   P+ +++G I   +    DI+  K   E +  +A  DNLT +PNR  F++R+   + 
Sbjct: 242 VNGAPLKDADGVITHIVFSVTDISHHKHVEEQLCHDALHDNLTRLPNRTLFMERVNHAIK 301

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
           L+  + +    V+ +D+D++K +ND LG  VGD +L +  R++ + ++  D +A LSG+ 
Sbjct: 302 LAKRNQDYLFAVLFLDLDRFKVVNDSLGHDVGDQLLTATARQLEKCVRTTDTVAHLSGDE 361

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L    +       A  ++ ++  P NL   E+  +ASIG A  ++    S ++L++
Sbjct: 362 FTILLEDIKDIKDATRVAERIQATLKAPFNLNNHEVFTSASIGIALSSTGYERSEDILRD 421

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK  G    E F   + +   + + ++ DL  A+E  E  + Y PI  L+   
Sbjct: 422 ADIAMYRAKELGKARHEIFDKIMHARALELLRLENDLRRALERQEFEVYYQPITSLVTGM 481

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-P 793
           + G EAL++W HP+ G +S +EF+ +AE+  +I  +  ++L    R +  W  Q   P P
Sbjct: 482 LTGFEALVRWRHPELGLVSPAEFIPVAEDTGLIIPLGEWVLHEACRQLRMWHTQFPTPEP 541

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++ K + + +L E +  ++++T    S +KL  +ES++M N E    +L +LR 
Sbjct: 542 LKMSVNLSGKQIKEPDLIEQIDHILAETGLDGSFLKLEITESILMENAETVTKMLLQLRA 601

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIET 911
             I L++DDFGT  S LSYL   P +T+K + S ++    K     I+R+II +A ++  
Sbjct: 602 RNIQLSVDDFGTGYSSLSYLHRFPVNTLKIDRSFVSKMNPKNRNTEIIRTIITLAHSLRM 661

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +IA+ +     + EL  + C+  Q    + PL 
Sbjct: 662 DVIAEGVETLEQLTELKLLNCEQGQGYLFSKPLT 695



 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
              +R  L    +    ++VW         +       TILG     ++     W   IH
Sbjct: 12  KSQKRHQLIPAILNSLDEVVWSASAQTYKLLYINQAAETILGRTLCELYDQPTLWELMIH 71

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +DR   +    S      G    E+R+   D +  W+  R+  +++  G ++R  GIA 
Sbjct: 72  PDDRQRVQQQFQSL--GESGNQAVEYRIVRPDGEVRWIHNRVCAIADETGTVIRIDGIAR 129

Query: 518 DITEQKKSL 526
           DIT++K++ 
Sbjct: 130 DITQRKQAE 138


>gi|153002714|ref|YP_001368395.1| PAS/PAC and Chase sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367332|gb|ABS10332.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Shewanella baltica OS185]
          Length = 1215

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 161/604 (26%), Positives = 282/604 (46%), Gaps = 16/604 (2%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               +  +    A+     L+    G  +I  ++      +   +     +     SG+ +
Sbjct: 619  KHYVHKNGQLVAVRLNGALVTGADGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGI 678

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYR 475
               D     V      + I G +   + G    +L      D+      R  L+      
Sbjct: 679  TIMDANDIIVDVNSAFSQITGYSREEIIGKNCRFLEA-ERTDKGIDPQVRAALEQ----- 732

Query: 476  RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             G  Q E   R          + +  + +  G +  YIG   DI+E+K S E I   A  
Sbjct: 733  TGFWQGEVWDRHKHGYDFPKWLMMSVVRDDAGAVSHYIGSFTDISERKVSEERIHFLAHH 792

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D+LT +PNR S   RL  ++   A   + +  VM ID+D +K IND LG  VGD +L+ +
Sbjct: 793  DSLTLLPNRLSLQSRLE-VVFREALASDSQIAVMFIDMDHFKNINDTLGHHVGDQLLLEV 851

Query: 596  TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             RR+  ++   D +ARL G+ F + L S+ N  ++A  A A+R  ++    +  + +  +
Sbjct: 852  ARRLKNIVGDTDTVARLGGDEFVVAL-SDTNHDEVASLAEALRSGLSQTYIINNQALHSS 910

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
             SIG + + +   +   ++KNA++AMY AK  G N+ + F  +     ++R  I+  L  
Sbjct: 911  PSIGISLFPTDGDSVEALMKNADMAMYRAKSAGRNNYQFFTAAMNTLITERQQIETGLRQ 970

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
             + N EL L Y P I +   ++V +EAL++W HP++G ++   F+ IAEE+ MI  I  +
Sbjct: 971  VLANDELRLHYQPQIDIRTGQVVSVEALVRWQHPEFGMVAPDRFIPIAEEIDMIIPIGQW 1030

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +LE     + +WR       + + +N+++  L  + +   +  ++ K       ++L  +
Sbjct: 1031 VLETAMAQLAAWRAAGATE-LRMAVNLSAHQLRKDSIVADITNVLLKHKLGKGALELEIT 1089

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
            ESV M  PE++  LL  LR+ GI L +DDFGT  S LSYL  +P D +K + S +     
Sbjct: 1090 ESVAMQYPEQNARLLAELRQHGIELAIDDFGTGYSSLSYLKLLPLDRLKLDRSFVKDIES 1149

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 AI  + I M+  +  T++A+ +  E  +  L+ MGCD +Q  + + PL     ++
Sbjct: 1150 DPNDAAISAATISMSHELGLTVVAEGVENEAQLVLLSSMGCDLVQGFYFSKPLAAEECVR 1209

Query: 952  LLKE 955
             ++ 
Sbjct: 1210 FIQR 1213



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 5/207 (2%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +H +     AVL+   + L  +  +  ++         ++       +   V      + 
Sbjct: 466 WHIVIYQSYAVLMGDTFSLSLLMLLLAFITCAVVGGMTLVSSGERQRIAEKVTEKTMALS 525

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + +     F   +    +R       +    V         V   P    + G +   + 
Sbjct: 526 KEIARRQAFQATLVQSEQRYRNLFDKAPVGHVLKRLDDGQFVAINPAFEAMTGYSLDEL- 584

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +  W   +         T     +   R    Y+      + Q   + +    ++ ++
Sbjct: 585 NQLDPW--DLTPKRYQLSETEQLERLKQTRRYGPYQKHYVHKNGQLVAVRLNGALVTGAD 642

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
           G+ L  + I  DITEQ++++  +   A
Sbjct: 643 GEQL-ILFIVEDITEQERTVARVNLLA 668


>gi|56752244|ref|YP_172945.1| hypothetical protein syc2235_c [Synechococcus elongatus PCC 6301]
 gi|81300668|ref|YP_400876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
 gi|56687203|dbj|BAD80425.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169549|gb|ABB57889.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
          Length = 917

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 164/613 (26%), Positives = 294/613 (47%), Gaps = 17/613 (2%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSDGERQSL- 409
           +GL + +   +  D++QP      V + I+ I +   +  LA       +    +R  L 
Sbjct: 303 LGLPLTLNVTVQLDLVQPDGSLRYVEVSIVPIPWQQSKAYLALLTDITSLQQTQQRLKLL 362

Query: 410 --AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFR 465
             A   S   +             P    + G  +  + G    +L    +  +   +  
Sbjct: 363 QEATENSPASILITSAEGIIEYVNPAFELMTGYGADEVIGKNPRFLKSGLMSPSFYQDLW 422

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             + +         + E   R    +  W    I P+ +  G I+ ++ +  DITEQK++
Sbjct: 423 ETITA-----GETWRGELYNRRKTGELFWDRTSISPVKDLAGQIIHFVAVKEDITEQKRN 477

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D+LT +PNR   LDRL     LS   ++    VM++D+D++K IND LG 
Sbjct: 478 RELLDHQANYDSLTDLPNRSLALDRLRQATALSERSNDT-VIVMLLDLDRFKNINDTLGH 536

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD +L  + +R+   L     ++RL G+ F II  +   ++ +   +  + K I+ PI
Sbjct: 537 SYGDCLLQEIAKRLRYHLPREITISRLGGDEFLIICPAVKENIHLEKLSQQLLKIISQPI 596

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSD 703
            +   E+ +TASIG A + +  +T   +++NA+ AMY AK  GGN  + F   +++    
Sbjct: 597 TIEAEELVITASIGVACYPNDGVTPEVLMRNADTAMYSAKRNGGNDFQLFMPTMNAEAHA 656

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++  L  A+E  +L + Y PII L D  +VGLEAL +W  P+ GNI    F+ IAEE
Sbjct: 657 RIQLETHLRHALEQYQLKVFYQPIISLQDNHVVGLEALARWHDPELGNIPPDRFIPIAEE 716

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   ++E+  +D+  W+ + N  P ++ +N++ + L  N   +    ++ +  +
Sbjct: 717 TGLIIPLGYRVIEQACQDVAIWQQKYNY-PFWVAVNLSPRQLRSNRFTQITAKILQRHNF 775

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P+ +KL  +E +++ N      +L  L + GI+L LDDFGT  S LSYL   PF ++K 
Sbjct: 776 RPNYLKLEVTEQMLLDNTSTIAQMLDTLHRKGIALALDDFGTGYSALSYLRRYPFQSLKV 835

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +     + +  A++++I+ MA  +    +A+ +     ++ L  +GC+Y Q    +
Sbjct: 836 DQSFLRDIPHSTESCALVKTIVAMAHGLGMQAVAEGVETAEQVEFLKAIGCEYGQGYWFS 895

Query: 942 SPLGFNSILKLLK 954
            PL    I   L 
Sbjct: 896 RPLPAVEIDSFLA 908



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 8/164 (4%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +   +    L         L+     Q      +         E Q L         W W
Sbjct: 92  IPLTLELQWLADVESEASFLLVTGSCQDSHQNLFLDWQQLQSLEVQRL---SHKVGHWSW 148

Query: 422 D-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +    D     P I T +G +       + ++L + H +  ++ +      +G +R    
Sbjct: 149 NRSQADEFLAPPHIYTQIGRSLHE-PFTLTSFLQHCHSS-LESLQAN-AISLGNQRSHYL 205

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           ++F V+ A     W         +  G++L  +G   DITE+  
Sbjct: 206 WDFPVKTAH-SDRWFECHCLLHHDETGELLSLVGNIRDITEEHH 248


>gi|313107253|ref|ZP_07793449.1| motility regulator [Pseudomonas aeruginosa 39016]
 gi|310879951|gb|EFQ38545.1| motility regulator [Pseudomonas aeruginosa 39016]
          Length = 1111

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    +    +     S   +   D     V      + + G +   +       L   
Sbjct: 541  QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 598

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +          G  + E   +    + +   + I  + +  GD++ ++  
Sbjct: 599  --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 656

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +M +D+D+
Sbjct: 657  FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 715

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +      +  
Sbjct: 716  FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 775

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHAK  G N+
Sbjct: 776  QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 835

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL++W HP+ 
Sbjct: 836  FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 895

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N++++   D +
Sbjct: 896  GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 954

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DDFGT  S 
Sbjct: 955  LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1014

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  +  +  L
Sbjct: 1015 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1074

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               GCD +Q      P+       L   
Sbjct: 1075 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1102



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 261 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 320

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 321 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 380

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 381 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 419



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 392 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 451

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486
                    L  +H              +L         R +  E R             
Sbjct: 452 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 505

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            AD +   + +RI  M + +      +GIA DI++Q+++   +   A 
Sbjct: 506 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 553


>gi|119899788|ref|YP_935001.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119672201|emb|CAL96115.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 726

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 151/575 (26%), Positives = 260/575 (45%), Gaps = 16/575 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            A    SQ + +        V  S D+++  D         P +  +LG     +     
Sbjct: 146 RANRAMSQRLRTSERLHRYLVESSPDLIFTLDAEGRFSYLNPRVKALLGYDRNVLMRRP- 204

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-------DNQFHWMIIRIRPMS 503
            +   +   D D   T+L + V         E R+R           ++  + +   PM 
Sbjct: 205 -FTTLVMPEDVDRIATLLYAPVAGPGESFHVELRLRRNRELLAGDSPEWITVALTGIPMP 263

Query: 504 N-SNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
              +G     + G+A DI+E+K++ E I   A+ D LT +PNR  F DRL   +  +   
Sbjct: 264 AREDGRRGGGLYGVARDISERKRAEEIISFQAYHDQLTRLPNRVLFKDRLELAIAQAQRR 323

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 VM ID+D++K +ND  G A GD +L  +  R+   L+  D LARL G+ F ++L
Sbjct: 324 TGA-LAVMFIDVDRFKLVNDTFGHAEGDMLLRGIAARLAGTLRRGDTLARLGGDEFTVLL 382

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              N        A  +  S++ P  L   +   TASIG A +      + ++ ++A++AM
Sbjct: 383 PDINGPQDAEVIARKILDSLSAPFPLSHGDFRATASIGIALFPRDGDGAEDLTRHADIAM 442

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y  K  G N    F ++     R    ++ DL  A+E  E  L Y P I L    +VG+E
Sbjct: 443 YQVKRSGKNGFRFFDIALNSHYRERIVLENDLRTALERREFELHYQPQISLTQHRVVGME 502

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G +S + F+ +AEE+ +I  I+ ++LE     +  WR+  +   + + +N
Sbjct: 503 ALLRWNHPNLGLVSPATFIPVAEEMGLIGDISRWVLEEACGQLARWREAGHN-DLRMSLN 561

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++  D    ++   +   + +    PS+++L  +ES++M +       +  LR+ G+S+ 
Sbjct: 562 LSPHDFDSQDVVTMVTECVERHRLPPSQLELEITESMMMQDAAGVAAKVRGLREAGLSVA 621

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDI 918
           +DDFGT  S L+YL   P  T+K + S +          I+ +I  +A+     +IA+ +
Sbjct: 622 IDDFGTGYSALAYLQKFPVSTLKIDRSFVRELEGPNTNPIISAITGIARGFGLQLIAEGV 681

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                 + L  +GCD +Q    A P         L
Sbjct: 682 ERSEQAETLRTLGCDVMQGFLYARPAPAAEATAWL 716


>gi|114565155|ref|YP_752669.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114336448|gb|ABI73830.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 696

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 149/580 (25%), Positives = 274/580 (47%), Gaps = 23/580 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I +VL      + +     + + A   +    W+WD   D++  + ++  +LG+    +
Sbjct: 120 RIHYVLKANKTIKELTKSKNKLARAQSIAHLGSWEWDFTSDKLDCSDEVYRMLGMQPQEI 179

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L  IH +DR+  +  + + + +R+     E+RV     +   +  R     + 
Sbjct: 180 DITFSKLLEIIHPDDREFLKLTVKTALKHRQ-PYDIEYRVLHGSGEIITLHDRTDITYD- 237

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G+  R  G  +DI+ +KKS + I   AF D LT +PNR+ FL +L + +  +    + +
Sbjct: 238 FGEP-RINGTLHDISSRKKSEQEIAYYAFYDTLTDLPNRRKFLLQLDSAIASAKRH-STK 295

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-------------KFPDILARL 612
             ++ ID+D +K+IND LG   GD++L     RI   +                + LARL
Sbjct: 296 LALLFIDLDHFKRINDTLGHKAGDELLCETATRIKSSVRISDELSVGSRVDYENEHLARL 355

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L        +A  A  +  +++ P  +  ++  ++ASIG + +     +   
Sbjct: 356 GGDEFTLLLCELEAFDNVAIIAQRVLDALSKPFVIQGQQTFISASIGISFYPDDGESGDI 415

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENS-ELYLVYHPIIR 729
           +L++A+ AMY  KH G N  + F     +   DR+ I+ +L  A+    +  L Y P I 
Sbjct: 416 LLQHADTAMYEVKHNGKNGYQLFSHEMHKSLMDRLKIEVELREAIRLGDQFVLYYQPQID 475

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
             ++ IVG EAL++W+HP  G ++  +F+ IAE   +I  I  + L              
Sbjct: 476 SANDNIVGYEALLRWNHPTRGLLTPIDFLAIAESSGLIIPIGEWALLEACSKAKQIHIAD 535

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                 + +N+++       + + ++  + +T   P+ ++L  +ES ++ N + +  LL 
Sbjct: 536 ANFQ-RMAVNLSALQFNHANIFDHVKRALVETGLPPNLLELEITESAIISNVDEAIALLF 594

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            L+K+G+ L +DDFGT  S L+YL   P DT+K + S + G    +K  AI R+I+ +A 
Sbjct: 595 MLKKLGVKLAIDDFGTGYSSLNYLKSFPIDTLKIDKSFVDGIVSNQKDAAIARTIVQLAL 654

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           N+E + IA+ +      + L  MGC  +Q    + PL   
Sbjct: 655 NLELSTIAEGVEYIEQHELLKAMGCTNLQGYLYSKPLPPE 694


>gi|307728462|ref|YP_003905686.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. CCGE1003]
 gi|307582997|gb|ADN56395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. CCGE1003]
          Length = 1036

 Score =  546 bits (1406), Expect = e-152,   Method: Composition-based stats.
 Identities = 145/556 (26%), Positives = 267/556 (48%), Gaps = 14/556 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G     + G     L     +DR+ 
Sbjct: 477  QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDPAEVIGHDCRVLQR---DDREQ 533

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ N+ G I  +IG+ ND+T+ 
Sbjct: 534  EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNAEGVITHHIGVINDVTDL 592

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ +D+D +K +ND 
Sbjct: 593  MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKG-VAVVFMDLDGFKNVNDS 651

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R S++
Sbjct: 652  LGHSVGDRLLGVVAERLARCTRTSDTVARHGGDEFVIVMTDTVDEQSLIAWMERVRASVS 711

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++     S
Sbjct: 712  EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771

Query: 703  D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ +++  L Y P + +   +IVG EAL++W  P+ G +  S F+ +
Sbjct: 772  AGARLNLERRLRRALRDNQFLLHYQPQVDIHTGQIVGTEALVRWHDPEGGLVPPSSFIPV 831

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W++   +PP  + +N++++     ++   +  ++ +
Sbjct: 832  AEESGLIGPLSEWVLREACRQNKAWQN-LGLPPARVSVNLSARVFQQRDIARLVMQVLDE 890

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 891  TGLEPQYLELELTESAIMRNAEEAVSMLNELSALGIGLAIDDFGTGYSSLSYLKRFPVDR 950

Query: 881  VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 951  LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010

Query: 939  HVASPLGFNSILKLLK 954
            + A PL  ++I +L+K
Sbjct: 1011 YFAKPLSTDAISELMK 1026



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 20/181 (11%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            +  DI   AL         ++       V              +     +      ++ 
Sbjct: 312 LISADISYHALNFMGRAAFFVLAD----DVTEQINAEAEAQRSNQMLETVIDNIPQRIFW 367

Query: 421 WDIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVG 473
            D+    +      A   GLA    + G      P R +   ++ +DR+   T +     
Sbjct: 368 KDLESRYLGCNMAFARDAGLAYPEQVVGKSDADMPWRAFAELLNAHDREVVETGVPKM-- 425

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 + +  +   D      +    P ++  G ++  +G   DITE+K++   +   +
Sbjct: 426 ----SFEVDVVI---DGVHRTTVTSKLPFTDGEGRVIGVLGSYTDITERKRADLALRLQS 478

Query: 534 F 534
            
Sbjct: 479 R 479


>gi|218893698|ref|YP_002442567.1| motility regulator [Pseudomonas aeruginosa LESB58]
 gi|218773926|emb|CAW29740.1| motility regulator [Pseudomonas aeruginosa LESB58]
          Length = 1415

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    +    +     S   +   D     V      + + G +   +       L   
Sbjct: 845  QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +          G  + E   +    + +   + I  + +  GD++ ++  
Sbjct: 903  --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +M +D+D+
Sbjct: 961  FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +      +  
Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHAK  G N+
Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL++W HP+ 
Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N++++   D +
Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DDFGT  S 
Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  +  +  L
Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               GCD +Q      P+       L   
Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486
                    L  +H              +L         R +  E R             
Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            AD +   + +RI  M + +      +GIA DI++Q+++   +   A 
Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857



 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425
           GG + I +L+    +  +L      QG+            + + A+    + V       
Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312

Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477
                 P    + G++S       +   LP +          D +    +L   V     
Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    A+          +R      G     + +  D+TE++ +
Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 416


>gi|116052743|ref|YP_793060.1| motility regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587964|gb|ABJ13979.1| motility regulator [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1415

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    +    +     S   +   D     V      + + G +   +       L   
Sbjct: 845  QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +          G  + E   +    + +   + I  + +  GD++ ++  
Sbjct: 903  --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +M +D+D+
Sbjct: 961  FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +      +  
Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHAK  G N+
Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL++W HP+ 
Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N++++   D +
Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DDFGT  S 
Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  +  +  L
Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               GCD +Q      P+       L   
Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486
                    L  +H              +L         R +  E R             
Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            AD +   + +RI  M + +      +GIA DI++Q+++   +   A 
Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857



 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 74/282 (26%), Gaps = 43/282 (15%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425
           GG + I +L+    +  +L      QG+            + + A+    + V       
Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312

Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477
                 P    + G++S       +   LP +          D +    +L   V     
Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                    A+          +R      G     + +  D+TE++ +L  +        
Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHALGVLEET----- 423

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
                 R+ + D              +   + V+D+   ++     G+     +   L  
Sbjct: 424 ------RRRYQDIFE----------GVGVALCVLDLSALRQALVEQGLDSCAALRAWLAG 467

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
              E  +   +L R+       +                +  
Sbjct: 468 ---EPGRQQALLERIRITEINDVSRRLLQIESTEQAWQRLLD 506


>gi|315266684|gb|ADT93537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 920

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G     + G   R +    H  
Sbjct: 367 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 424

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F  + ++ +    G+   E   R  +       I I  + +  GD+  ++ +  DI
Sbjct: 425 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 482

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK++   +   A+ D LT +PNR  F+ +L   +  +    NL+   ++ID+D +K I
Sbjct: 483 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 541

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   +   D+L+R+ G+ F  ++   +N+         +R+
Sbjct: 542 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 601

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + +    +  +L+NA+ AMY AK+ G N+   +  S
Sbjct: 602 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 661

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG EAL++W  P+ G IS + 
Sbjct: 662 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 721

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE   R  + W  +       I +N+A + L  +   + ++ 
Sbjct: 722 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 780

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T      ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 781 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 840

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  IIA+ +  +     L +  CD 
Sbjct: 841 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 900

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P     +   L 
Sbjct: 901 AQGYLFSRPQLPEDLDAFLS 920


>gi|291613862|ref|YP_003524019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583974|gb|ADE11632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 923

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 158/561 (28%), Positives = 282/561 (50%), Gaps = 13/561 (2%)

Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +     LA      SG+ +   D     V        + G  S  + G     L     
Sbjct: 364 QEEATLRLAARVFDSSGEAILITDENVRVVAVNHSFVAMSGYRSEEVMGKNPRMLSS-GR 422

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D + +R + D    +  G  Q E   +    + +   + I  + + +G ++ YI IA D
Sbjct: 423 HDAEFYRAMWDDINQH--GYWQGEIWDKHKSGRIYPKWMSITAVRDEHGKVVNYISIARD 480

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            TEQ ++ + I   A+ D LTG+PNR    DRL  ++ ++  D + + +++ +D+D++K 
Sbjct: 481 TTEQTEAEKNIHFLAYYDVLTGLPNRTLLRDRLGQMIAVAHRDKH-QFSLIFLDLDRFKY 539

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G +VGD +L S+  RI + ++  D +ARL G+ F ++L  E      +  A  + 
Sbjct: 540 INDSMGHSVGDRLLQSVALRIQDCVREGDTVARLGGDEFIVLLR-EAGESAASVVAQKLL 598

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++A P +L  + I+  ASIG + +      +  ++KNA++AMY AK  G N+ + F   
Sbjct: 599 IALATPYDLDGQVISTQASIGISIYPDQAQDADTLIKNADMAMYRAKEEGRNNFQFFVPE 658

Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +   +++DL LA+E  EL+L Y P   L    + G+EALI+WDHP  G +S +E
Sbjct: 659 MNFRVDLLFSMEKDLRLALERGELFLQYQPQADLASGTLSGVEALIRWDHPVKGQVSPAE 718

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I AI  ++L      +  WR    M  + I +N++ + L   +L E +++
Sbjct: 719 FIPVAEETGQIVAIGEWVLRTACSQMAEWRK-TGMHDLTIAVNLSIRQLRQPDLAELIKS 777

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T      ++L  +E ++MG+ + +   L  ++ +G+ L++DDFGT  S L+YL  +
Sbjct: 778 VLLETGLDARHLELEITEGIMMGDNQAAFRFLSEMQDLGVQLSIDDFGTGFSSLNYLKQM 837

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + S +      E   AI+RSII +   +   +IA+ +  +  +  L   GCD 
Sbjct: 838 PVNKLKIDQSFIRDIETDEGDAAIIRSIISLGHRLNLRVIAEGVETQEQLDFLRIRGCDE 897

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL     ++ +K 
Sbjct: 898 IQGYFYSRPLLAEDFMRFVKA 918



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 114/371 (30%), Gaps = 28/371 (7%)

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLI---------PTFAMAWVVLG 230
            +   + +     G   G+A   A+   + Y + R  +                 +  L 
Sbjct: 16  EFFANLGTELTPLGAF-GLACGNALEALLGYYLLRHRVSFNERLSTIRDVGLLFVFGALA 74

Query: 231 --YISIDFGFLSKLVNLPSGELLIWRACSEIAL--SSSLIIFLFMYLHWNRWHAKVG--- 283
              ++   G     ++                +  +  + +F    L W R  + V    
Sbjct: 75  SPLVAALNGAWWIKLSTGESWQDYIHTVQYWWMGDALGIALFTTTILAWTRGDSIVWSYE 134

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +    +A + +L      +  +   +    L   +L +               ++ + +
Sbjct: 135 RVRRGVLAAVVLLLTCWILFLDLPGRLLEFGLFFPLLIWIALNFDLRCVSGALLLIFLSS 194

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
            + +         ++   ++   +   L G   L V ++                 +   
Sbjct: 195 ILGLLSLGDLRGSSLDTLVNFVWLYNLLFGLTALSVAVLNA-------QHRRSEHALKLS 247

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +  + A    G   W  DIV + +  + +   I G+A G+       +L ++H +DRD 
Sbjct: 248 EDNLNRAQSIVGIGSWHLDIVNNCLQWSDETYHIFGVAEGTPL-NYEVFLEHVHADDRDL 306

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                   +   R     E R+   + +  W+  +     +++G+ +  IG   DIT  K
Sbjct: 307 VNRTWQQAL--LRQPYDIEHRIL-VNGEIRWVREKANLDFDAHGNAVYAIGTVRDITRYK 363

Query: 524 KSLEGILCNAF 534
           +    +   A 
Sbjct: 364 QEEATLRLAAR 374


>gi|160874448|ref|YP_001553764.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160859970|gb|ABX48504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
          Length = 921

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G     + G   R +    H  
Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F  + ++ +    G+   E   R  +       I I  + +  GD+  ++ +  DI
Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK++   +   A+ D LT +PNR  F+ +L   +  +    NL+   ++ID+D +K I
Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   +   D+L+R+ G+ F  ++   +N+         +R+
Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 602

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + +    +  +L+NA+ AMY AK+ G N+   +  S
Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 662

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG EAL++W  P+ G IS + 
Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 722

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE   R  + W  +       I +N+A + L  +   + ++ 
Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T      ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 841

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  IIA+ +  +     L +  CD 
Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P     +   L 
Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921


>gi|34496829|ref|NP_901044.1| hypothetical protein CV_1374 [Chromobacterium violaceum ATCC 12472]
 gi|34102684|gb|AAQ59049.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 842

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/572 (25%), Positives = 268/572 (46%), Gaps = 14/572 (2%)

Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A     + +        LA      + + +   D      +  P  A I G +     G 
Sbjct: 270 ALRQRDEALQQSRHSLLLADKVFESTMEGIIITDRNGVIQSVNPAFARITGYSREEALGQ 329

Query: 449 IRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L         + ++ +  S +  R GR Q E   R      +   + I  + ++ G
Sbjct: 330 TPALLKSGKQP--PEFYQQLWRSLL--RDGRWQGEVVNRRKGGLLYTEHLSITAIRDAAG 385

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           + L Y+ + +DIT++K++ E +   A  D LT +PNR  FL++L   ++ +      R  
Sbjct: 386 ECLHYVAVFSDITQRKQAEERLHFLANHDALTSLPNRTLFLEKLQGAVERAGL-GGQRLA 444

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D++K +ND LG   GD +L+ + R++   L   + +ARL G+ F ++L      
Sbjct: 445 LLFIDLDRFKLVNDTLGHYAGDQLLIHIARQLQSRLLPGETVARLGGDEFTLLLEGVGGE 504

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++A  A AM  +I     +  +++ ++ASIG + +      +  +L +A+ AMY AK  
Sbjct: 505 AQVAARAQAMLDAITELSGVAGQQMFISASIGISMFPLDGRDADTLLVHADTAMYRAKDG 564

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N  + +         +R+ ++  L  A+   EL L Y P + L   +++G EAL++W 
Sbjct: 565 GKNGFQFYTPDMNARALERLKLEYSLHRALAQQELELWYQPKVALDSGQLIGAEALLRWR 624

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +    F+ IAEE  +I  I  ++LE    D   WR+    P   + +N++ + L
Sbjct: 625 HPELGLVPPDRFIPIAEESALIAQIGAWVLETACADARRWRNAGLAPG-RLAVNVSGRQL 683

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +    ++  +++       ++L  +ESVVM +       L RL+K+G+ L++DDFGT
Sbjct: 684 KHGDFVAELEQALARHGLDSDALELEITESVVMEDAGGMVDTLFRLQKLGMYLSIDDFGT 743

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P   +K + S +          AI R+II +A+++   ++A+ +  E  
Sbjct: 744 GYSSLSYLKRLPVRGLKIDRSFIDDLHCDGDDAAITRAIISIARSLGLDVVAEGVEEEAQ 803

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + L   GC+  Q    + PL  ++   LL  
Sbjct: 804 RRFLLEQGCNCAQGYLFSKPLPRDAYEALLSR 835


>gi|300864011|ref|ZP_07108917.1| PAS fold family (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300337988|emb|CBN54063.1| PAS fold family (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 966

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 159/597 (26%), Positives = 292/597 (48%), Gaps = 26/597 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442
              +  +       + +    E+       + + ++        ++  P ++ I G  + 
Sbjct: 369 LGTLTDITDRKQAEESLKRAEEKYRSIFENAIEGIFQSTPEGRYLSANPALSKIYGYNSP 428

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +   I++    +++N     R      V  +    ++E  V  AD    W+    R +
Sbjct: 429 EELIEQIQDIKTQVYVN--PRRRAEFVREVETKCSISEFESEVYCADGSTIWISENARTV 486

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            N+NG++L Y G   DIT +K + E +L +A  D LTG+PNR  F+DRL   ++L     
Sbjct: 487 RNNNGELLYYEGTVEDITVRKMAEEKLLHDALHDTLTGLPNRALFMDRLGHAIELGKRRP 546

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +   V+ ID+D++K +ND LG  VGD +L+++ +R+   L+  D +ARL G+ F I+L 
Sbjct: 547 EILFAVLFIDLDRFKVVNDSLGHLVGDQLLIAIAQRLKICLRTGDTVARLGGDEFAILLE 606

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS------------------WT 664
           +  ++      A  ++  +A P +L   +I  +ASIG                       
Sbjct: 607 NIKDASDATIIAERVQNELAAPFHLSAHKIFSSASIGIVCSGLAPFRDGEATTLPHLQCP 666

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYL 722
                  ++L++A+ AMYHAK +G    E F +S        + ++ DL  AVE  E  L
Sbjct: 667 ILYDRPEDLLRDADAAMYHAKAQGKARHEIFDMSMHTRAVALLELENDLRRAVERQEFQL 726

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI+ L++ +I G E L++W HP+ G ++ +EF+ +AEE  +I  I  +ML      +
Sbjct: 727 YYQPIVSLVNGKISGFEVLLRWQHPQRGLVTPAEFIRVAEETRLIVPIGWWMLRSACHQM 786

Query: 783 ISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             W+ +    PP+ I +N++++     +L + ++ ++ +T  +P  +KL  +ESV+M N 
Sbjct: 787 YQWQQEFPTDPPLTISVNLSNQQFTQPDLIDQIRKILLETDLNPRSLKLEITESVIMDNA 846

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
           E +  LL +LR + I L +DDFGT  S LS L   P D +K + + ++     E   AI+
Sbjct: 847 ESAAALLLQLRALEIQLYIDDFGTGYSSLSRLHSFPTDALKIDRAFVSRMADDEGNEAIV 906

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++I+ +A ++   +IA+ +     + +L  + C+Y Q    + P+  N+   L+  +
Sbjct: 907 QTILILAGHLGMDVIAEGVETAEQLAQLRALQCEYGQGYFFSKPIDCNAATVLVAAQ 963



 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 4/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +    ++  +  +    + +     R           ++  +   + +   P    + GL
Sbjct: 241 IFLQGLMLDITESKVTERALQESEYRYYTLAKMLPVGIFRTETAGECLYVNPRFCEMAGL 300

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                      W+  +H +DRD   T     +  +    + E+R +   ++  W+  +  
Sbjct: 301 TPAEALKS--GWVRSLHPDDRDRVLTAWYRAITEKM-PFKLEYRFQ-KGSEVTWVYCQAV 356

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
           P    NG++  Y+G   DIT++K++ E
Sbjct: 357 PEVEKNGEVTGYLGTLTDITDRKQAEE 383



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 73/267 (27%), Gaps = 18/267 (6%)

Query: 280 AKVGYITFSGIACIAILFCMS--FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
             +     + +  + + F ++   Y          +T+ +I         +         
Sbjct: 6   PFLSNGIPAYLLGLLVTFAIALIAYTNKGLLKSTTVTVGTISDRSFAIGNFWTSDRLVLP 65

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
             L P+  L          +      +D+++      L   +  +  T+           
Sbjct: 66  RQLPPSKTLAAWQCNSQEESSA--TGSDLVKTGAQSLLAQEIAAVNLTI----EEQQRLE 119

Query: 398 QGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +   +          + +    +    R+  +  I  +LG +              
Sbjct: 120 AALRTSEAKYRALSEQIAAVTYIAPLERPSHRLYISSQIVKLLGYSLEEWKACPNLLSKI 179

Query: 456 IHINDRDNFR---TILDSFVGYRRG----RLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +H +DRD          +    +          E+R  A + +  W   R   + +    
Sbjct: 180 LHPDDRDRLLVEDATRRAASVGKESINDQSFTVEYRAIAKNGRVLWFCDRAVAVRDEVNQ 239

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQ 535
            +   G+  DITE K   E  L  +  
Sbjct: 240 SIFLQGLMLDITESK-VTERALQESEY 265


>gi|15599797|ref|NP_253291.1| motility regulator [Pseudomonas aeruginosa PAO1]
 gi|107099735|ref|ZP_01363653.1| hypothetical protein PaerPA_01000753 [Pseudomonas aeruginosa PACS2]
 gi|254238656|ref|ZP_04931979.1| motility regulator [Pseudomonas aeruginosa C3719]
 gi|9950851|gb|AAG07989.1|AE004874_2 motility regulator [Pseudomonas aeruginosa PAO1]
 gi|126170587|gb|EAZ56098.1| motility regulator [Pseudomonas aeruginosa C3719]
          Length = 1415

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    +    +     S   +   D     V      + + G +   +       L   
Sbjct: 845  QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +          G  + E   +    + +   + I  + +  GD++ ++  
Sbjct: 903  --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +M +D+D+
Sbjct: 961  FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +      +  
Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHAK  G N+
Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL++W HP+ 
Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N++++   D +
Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DDFGT  S 
Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  +  +  L
Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               GCD +Q      P+       L   
Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486
                    L  +H              +L         R +  E R             
Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            AD +   + +RI  M + +      +GIA DI++Q+++   +   A 
Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857



 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425
           GG + I +L+    +  +L      QG+            + + A+    + V       
Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312

Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477
                 P    + G++S       +   LP +          D +    +L   V     
Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    A+          +R      G     + +  D+TE++ +
Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 416


>gi|254244505|ref|ZP_04937827.1| motility regulator [Pseudomonas aeruginosa 2192]
 gi|126197883|gb|EAZ61946.1| motility regulator [Pseudomonas aeruginosa 2192]
          Length = 1415

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    +    +     S   +   D     V      + + G +   +       L   
Sbjct: 845  QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 902

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +          G  + E   +    + +   + I  + +  GD++ ++  
Sbjct: 903  --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 960

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +M +D+D+
Sbjct: 961  FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 1019

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +      +  
Sbjct: 1020 FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1079

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHAK  G N+
Sbjct: 1080 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1139

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL++W HP+ 
Sbjct: 1140 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1199

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N++++   D +
Sbjct: 1200 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1258

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DDFGT  S 
Sbjct: 1259 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1318

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  +  +  L
Sbjct: 1319 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1378

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               GCD +Q      P+       L   
Sbjct: 1379 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1406



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 565 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 624

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 625 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 684

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 685 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 723



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 696 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 755

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486
                    L  +H              +L         R +  E R             
Sbjct: 756 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 809

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            AD +   + +RI  M + +      +GIA DI++Q+++   +   A 
Sbjct: 810 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857



 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425
           GG + I +L+    +  +L      QG+            + + A+    + V       
Sbjct: 253 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 312

Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477
                 P    + G++S       +   LP +          D +    +L   V     
Sbjct: 313 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDAGGDGETRSELLPLRVRGEPR 372

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    A+          +R      G     + +  D+TE++ +
Sbjct: 373 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 416


>gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans]
 gi|133738068|emb|CAL61113.1| putative two-component response regulator [Herminiimonas
           arsenicoxydans]
          Length = 818

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 153/531 (28%), Positives = 270/531 (50%), Gaps = 10/531 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +       TI G +S    G    +L  +   D+     +  +    R   +    R   
Sbjct: 286 IYVNGAFETITGYSSEEAIGRNCKFLQGMD-TDQPELGKLRAAIREQRPASVLL--RNYH 342

Query: 488 ADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            D       + I P+S+++G  +  ++G+  D+T+ K+  E +   A  D LTG+ NR  
Sbjct: 343 KDGSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRNL 402

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             +R    L  +   D+   +++ ID+D +K +ND +G   GD+++ ++  R+   ++  
Sbjct: 403 LNERTQQALLQARRHDHF-LSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDG 461

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D +AR+ G+ F ++L +++ S   A     ++  +  P+ +  +EI VT S+G A +   
Sbjct: 462 DTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQAELIKPMWIRGQEIVVTCSMGVARFPED 521

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              S  +L NA+ AMY AK  G N+ + +      +  +R+ ++ DL  A++N EL+LVY
Sbjct: 522 GEDSESLLANADTAMYRAKSSGRNNFQFYTKEMNATSGERLSLESDLWHALKNDELFLVY 581

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P I L D  ++G+EALI+W HPK G I+  +F+ +AE   +I  I +++LE   R  + 
Sbjct: 582 QPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIWVLETACRHNLQ 641

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            + +   PPI + IN++++ L D    E +Q++I      P  ++L  +ES+VM N E  
Sbjct: 642 LQKEGL-PPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLELEVTESMVMHNVEDV 700

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSI 902
            + L  L K+GI L+LDDFGT  S L+YL   P D +K + S +    S      I ++I
Sbjct: 701 VVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDSDPGDAIIAQTI 760

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I +A  ++  +IA+ +     +  L + GCD  Q   ++ PL F+ +   L
Sbjct: 761 IALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPLTFDDLRMFL 811



 Score = 38.4 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 38/141 (26%), Gaps = 4/141 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++   A       +          +       +  D     +     +     +  G   
Sbjct: 121 VEQRDARRRIETELLESNLMFRTFMENLPGAAFIKDQDGRYLYCNHGLDKAFNVEKGCSI 180

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G +      + +      R +    +       + E  +       +W+     P+   N
Sbjct: 181 GKLDT--ELVPLEVAYKLREMEARVLKAGTALQELEV-MSMPSGASYWLS-TKFPLVGEN 236

Query: 507 GDILRYIGIANDITEQKKSLE 527
            D     GIA DITE+ K  +
Sbjct: 237 SDSQHVGGIAIDITERMKVEQ 257


>gi|291614778|ref|YP_003524935.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291584890|gb|ADE12548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1135

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 141/552 (25%), Positives = 266/552 (48%), Gaps = 16/552 (2%)

Query: 414  SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472
            + + +   D  R+ +        I G ++  + G   R     +H  D   +  + ++ V
Sbjct: 584  AQEGMLITDADRNILRVNRAFTDITGYSAEEVIGKNPRILSSGLH--DSHFYAAMWNTLV 641

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                G  + E   +  + + +   + I  + ++ G ++ Y+   +DIT  K + + I   
Sbjct: 642  A--TGAWKGEIWNKRKNGEVYPERLAITAVKDARGVVINYVASLSDITLHKAAEDEIRSL 699

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            AF D LTG+PNR+  +DRL   L  S+        ++ +D+D +K +ND LG  +GD +L
Sbjct: 700  AFFDPLTGLPNRRLLMDRLQQALVASSRSGKA-GALLFLDLDNFKNLNDTLGHDIGDLLL 758

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINL 647
              + +R+   ++  D +AR+ G+ F ++L   +        +       +  ++  P +L
Sbjct: 759  QQVAQRLKNCVREGDTVARIGGDEFVVMLEDLSAESIEAASQTEAVGWKIISTLNKPYHL 818

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
             + E+  T SIG   + S      ++ K A++AMY AK  G N +  F      +     
Sbjct: 819  EKFEVHSTPSIGATLFDSRPQIIDDLFKQADIAMYQAKKAGRNTMRFFDPQMQDTLNTRT 878

Query: 707  -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             ++ DL  ++E  E  L Y   +       VG EALI+W HPK G +S +EF+ +AEE  
Sbjct: 879  ALEADLRKSIERREFNLFYQIQVD-EMNRPVGAEALIRWIHPKRGMVSPAEFIPLAEETD 937

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  I L++L+     + +W++      + + +N+++K    ++    ++  + K    P
Sbjct: 938  LILNIGLWVLQEACAQLKTWQNNPLTRNLVLAVNVSAKQFRQSDFATQVRVFVEKYAIDP 997

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S++KL  +ES++  N E + L++  L++IG+  +LDDFGT  S L Y+  +P + +K + 
Sbjct: 998  SKLKLELTESMLQENIEDTILIMNALKEIGVQFSLDDFGTGYSSLQYIKKLPLNQLKIDQ 1057

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +          AI+R+II MAK+++  +IA+ +  +   + L   GC + Q    + P
Sbjct: 1058 SFVHDLDFDRDDKAIVRAIIAMAKSLQLDVIAEGVETQEQRQLLLNKGCTHFQGYLFSKP 1117

Query: 944  LGFNSILKLLKE 955
            L       LL+ 
Sbjct: 1118 LPIREFDALLER 1129



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLA----VLGSGDIVWDWD 422
             A     V+I +L+  +++           +    + ER           S + +   D
Sbjct: 288 AEAKTLLAVVIPVLLAISLLAMAFYRRLAQNEAQRREAERLQRINATVFDSSAEAIIITD 347

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  + ++  P    I G +   + G     L       +  +R + ++ +  R    Q E
Sbjct: 348 LNANIISVNPAFTQITGYSPEDVLGKNPRILSS-GQQSKGFYRELWEALL--RDNFWQGE 404

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              R  +   + + + I    +  G +  +IG+  DITE+K+    +   +
Sbjct: 405 LVNRHKNGSLYNIHLSISASRDGTGQLQHFIGVTTDITERKQHESELRMES 455



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 5/155 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +     V   +         +  + E+  + +  + D +   D   + +  +    ++LG
Sbjct: 431 LQHFIGVTTDITERKQHESELRMESEKNMVLLRNASDGIHILDPDGNIIEASDSFCSMLG 490

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                M G           +       +       + GR Q+E R R  D     + I  
Sbjct: 491 YQRNEMLGMNVCQWDADFSD--PRIVKLFRDQFTNK-GRTQFETRHRRKDGTVIDVEISG 547

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            P+   +G    +   + DITE+KK    I   A 
Sbjct: 548 YPLQ-LHGKPALF-NSSRDITERKKIEVEIQIAAT 580


>gi|126173489|ref|YP_001049638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125996694|gb|ABN60769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
          Length = 921

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G     + G   R +    H  
Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F  + ++ +    G+   E   R  +       I I  + +  GD+  ++ +  DI
Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK++   +   A+ D LT +PNR  F+ +L   +  +    NL+   ++ID+D +K I
Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   +   D+L+R+ G+ F  ++   +N+         +R+
Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNNEDATVAINQLRQ 602

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + +    +  +L+NA+ AMY AK+ G N+   +  S
Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPNDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 662

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG EAL++W  P+ G IS + 
Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAV 722

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE   R  + W  +       I +N+A + L  +   + ++ 
Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T      ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 841

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  IIA+ +  +     L +  CD 
Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P     +   L 
Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921


>gi|312128780|ref|YP_003993654.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
            [Caldicellulosiruptor hydrothermalis 108]
 gi|311778799|gb|ADQ08285.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor hydrothermalis 108]
          Length = 1016

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/569 (25%), Positives = 271/569 (47%), Gaps = 11/569 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            S+ +  + E+    V    D +W+ D    ++     +  +  + +         WL + 
Sbjct: 446  SEMLLEEKEKYKFLVENVSDCIWEIDFQEKKIEFYGRLKDLFDIDAIKSKNDFSAWLEFF 505

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +DR      L   +      L++E R+R  +  + W+   ++ + N      + I + 
Sbjct: 506  HEDDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWRWISSHVQILYNEEDKPEKIIAVN 565

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D T +K+    I   A+ D LT +PNR+ F +RL +++  +  D+  +  V++IDID +
Sbjct: 566  IDWTAKKEYEHKIEYIAYYDALTSLPNRKLFEERLESLIKKA-EDEKTQGAVVLIDIDNF 624

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633
            K IND+ G   GD+ L ++  ++ E L+        AR+ G+ F +IL       ++ + 
Sbjct: 625  KDINDLYGHEAGDEYLKAVGEKVLEYLENLNLKTFFARVGGDEFAVILHGLAKKEEVIEV 684

Query: 634  AIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               +       I +   E  I  +AS+G + +     +  E+ +N ++A+  AK  G N 
Sbjct: 685  CTQLLSIFESEIYIQKLEGHIFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKND 744

Query: 692  VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + F       +  ++ I++ L  A+E  +  L Y P+I L D EI  +EAL++W  P+ 
Sbjct: 745  FQIFMPFMLMKNLKKIEIEKSLKKAIEADQFELYYQPVINLKDMEIHSVEALLRWVLPEK 804

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G IS  EF+ +AEE  +I  I   ++E+   D+ +W  +     + + IN++++      
Sbjct: 805  GIISPLEFIPVAEESGLIVKIGEMVIEKAFSDLKNWERKGISY-LHMAINLSARQFKTKF 863

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                +Q LI +    P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S 
Sbjct: 864  FENMVQKLIEQYGVDPKKISFEITETGAVENFDVSLKILSFLCQLGIRFLIDDFGTGYSS 923

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L YL  +P   VK + S ++    +++  AI+  II MA  ++  ++A+ +  + +++ L
Sbjct: 924  LIYLKKLPIGGVKIDRSFISEIEFSKENRAIVEGIILMAHKLDLKVVAEGVETKRELEIL 983

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +GCD+ Q    + PL    + KLL  R
Sbjct: 984  KEIGCDFAQGYLFSKPLPKTQVEKLLLAR 1012



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 43/145 (29%), Gaps = 2/145 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +            G  +  +   L    +  IV   ++  + +        + G  S
Sbjct: 277 SMAIFVMTRINRRLEHGKQAYEKYAQLLAENANAIVLTLNLNGEIIYFNKFAEQLTGYKS 336

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G    W      + R  +   L   +   +    +E  +   +    W++     +
Sbjct: 337 EEVVGKK--WTDIFIPSHRREYIENLFKRIAEEKVLNDHENEIITKNGDIRWILWNNTLI 394

Query: 503 SNSNGDILRYIGIANDITEQKKSLE 527
            +   +    I    DIT+ KK+ +
Sbjct: 395 ESPYLNEPLIISTGLDITQIKKTQQ 419


>gi|149180252|ref|ZP_01858757.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1]
 gi|148852444|gb|EDL66589.1| sensory box protein/GGDEF domain protein [Bacillus sp. SG-1]
          Length = 706

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 162/586 (27%), Positives = 288/586 (49%), Gaps = 12/586 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           I         ++    + F  +  +       Q +    E+       S D ++  D   
Sbjct: 120 IYTEIQSYMEIICDKRVLFGSVIDITEQIEAQQMLEESNEKYKSLFESSPDAMYSMDENG 179

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +   P    ++G ++  M G    ++P +   D        +S           E  +
Sbjct: 180 ILIDVNPAGEQLIGYSTKEMKGMP--FMPLVASEDLPEAIKHFESAKVGE--PSSAELVL 235

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D+Q   +     PM   NG+I+   G A DIT++K   E +   AF D LT +PNR+
Sbjct: 236 IRKDSQKIHVEATHYPMK-VNGEIVGTYGTARDITKKKLYDEKMRELAFYDPLTRLPNRK 294

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL  I+ L+  ++ L  +V+ +D+D++K IND +G  +GD+ L  +  R+ + ++ 
Sbjct: 295 LFEDRLGQIIKLAKIEEKL-FSVIFLDLDRFKFINDSMGHHIGDEFLKLVADRLKQSIRS 353

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D L+RL+G+ F I+L        +   A  + +S+A P  +    ++V+ASIG A  T 
Sbjct: 354 TDTLSRLAGDEFTILLPDIT-EEDVISIAERINQSLAEPFQVSGHWLSVSASIGIAFSTG 412

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLV 723
             +  SE++  A+ AMY  K    +    +           ++I+ DL LAV N+EL L 
Sbjct: 413 KNVGVSEIIHRADTAMYQTKKFRRSQYTIYSDEMEVDTSYNLIIERDLPLAVINNELELY 472

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+ L  E+++ +EALI+W HP+ G ++ ++F+ +AEE   I  I  ++LE       
Sbjct: 473 YQPIMNLESEKVIAMEALIRWHHPELGMVAPNDFIRVAEECGQIIPIGNWVLETACIQNK 532

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W+D    PP  + +N+++K L   +  + ++ +++K+      ++L  +ES+++ + E 
Sbjct: 533 KWQDS-GKPPFKVAVNVSTKQLQQYDFVDSVKKVLAKSGLEAKWLELEVTESILLDDVEE 591

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901
            +  L RLR IG+S+++DDFGT  + LSYL   PFDTVK + S +   +       I  +
Sbjct: 592 IKESLTRLRGIGVSISIDDFGTGYTSLSYLRQYPFDTVKIDKSFIDDISRDLHGKRITSA 651

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           II +A ++   ++A+ I GE ++  L R  CD  Q  + + P+  +
Sbjct: 652 IISLAHSLNMNVVAEGIEGETELIFLKREKCDAGQGYYFSKPIPVH 697



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  +   V+  +            + +LG         + +    IH  D    + 
Sbjct: 35  FESLIEKAPIGVYILE-EGSVSYINNYYSDLLGYTREEFTQGLVSLQQIIHPEDYPTVQA 93

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++      +   +Y  R      +  +  I+       +  +L   G   DITEQ ++ 
Sbjct: 94  RIEGRNQGNKKVERYRVRNINKQGKLIYTEIQSYMEIICDKRVLF--GSVIDITEQIEAQ 151

Query: 527 EGIL 530
           + + 
Sbjct: 152 QMLE 155


>gi|172036436|ref|YP_001802937.1| hypothetical protein cce_1521 [Cyanothece sp. ATCC 51142]
 gi|171697890|gb|ACB50871.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 724

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 151/574 (26%), Positives = 278/574 (48%), Gaps = 9/574 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q  L        +    +R    +  + DI+       +    +P +  ILG    S+ G
Sbjct: 146 QATLERQKAETALRESEQRFRALIENAIDIILIVSSEGNLTYLSPSVKRILGYDPVSLMG 205

Query: 448 PIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               +   IH +D++  + + D       +     EFRV+  DN++  +    + + N +
Sbjct: 206 Q--GFWDLIHPDDQEAVKLVFDRIKGKANQSTAISEFRVQTDDNRWIILEAIAKNLEN-D 262

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +  ++   +DITE+  + + +  +A+ D LTG+ NR + L++L   +  +        
Sbjct: 263 PTVAGFVINCHDITERHYTAQQLRYDAYHDKLTGLANRSALLEQLKQAITRNQRRREDHF 322

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D++K IND LG  +GD++L +  +R+    +  D+LAR  G+ F  +L     
Sbjct: 323 ALLFLDLDRFKVINDSLGHLMGDELLKNTAQRLEHCHREGDLLARFGGDEFVFLLRDIQQ 382

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +    A  + + +  P  L  REI ++ASIG    T       ++L++A+ AMY AK 
Sbjct: 383 PQEAIIVAQRIHEVLKAPFTLNNREIFISASIGITISTDRYDHPEQILRDADAAMYRAKA 442

Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           +G    E F  +        + ++ DL  A++  EL + Y PI RL  ++I+G EAL++W
Sbjct: 443 KGKACHEIFAPTMHLSALKELHLESDLRQAIQRKELVVYYQPIFRLDTQQIIGAEALVRW 502

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASK 803
             P    I  ++F+ IAEE  +I  I+ ++L+   + +  W+ +     P FI +N++ K
Sbjct: 503 HPPGKSLIPPNDFIPIAEETGLIIDIDRWVLQCACQQLHQWQKEFKDLAPHFISVNLSPK 562

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D  L   +  +IS T      +KL  +E+V + N      +L +L+++ I + LDDF
Sbjct: 563 QFSDPYLTNTITEIISATELPKEYLKLEITETVFLKNSNTVLEILSQLQQLNIQICLDDF 622

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P +++K + S ++   +  K  AI+R +  +A  +E  +IA+ I   
Sbjct: 623 GTGYSSLSYLHRFPLNSLKIDRSFVSHLGQTTKNDAIVRIVGSLANELELELIAEGIEES 682

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I+ L  +G  + Q  + + P+   +   LLK+
Sbjct: 683 YQIEALNHLGYQWGQGYYFSPPIDDQAFSLLLKK 716


>gi|146305795|ref|YP_001186260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas mendocina ymp]
 gi|145573996|gb|ABP83528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas mendocina ymp]
          Length = 1404

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 152/563 (26%), Positives = 272/563 (48%), Gaps = 17/563 (3%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G ++G +   +   L   
Sbjct: 836  QRRAEKDLRMAATVFEHSTAAILVTDPAGYIVQVNKAFSRVSGYSAGQVLDQLPGMLT-- 893

Query: 457  HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               DR      L   +    +RG  + E  ++    +     + I  + +  GD++ Y+ 
Sbjct: 894  --ADRQQA-AHLQYILSQLNQRGSWEGEVWLKRKGGENFPAWVGITAVHDEEGDLVSYVC 950

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +    N    +M +D+D
Sbjct: 951  FFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERH-NEWVVLMFLDLD 1009

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KI 630
            ++K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           + 
Sbjct: 1010 RFKPINDSLGHAAGDRMLKDVAVRLSACVDGDDTVARMGGDEFTLLLQPRATREGALNRA 1069

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  +  S+A P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N
Sbjct: 1070 IHVAEQILDSLARPFVLEGREFFVTASIGIALAPQDGDELSQLMKNADTAMYHAKERGKN 1129

Query: 691  HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            + + ++     S  +R+ ++ DL  A E  +  L Y P        + G+EAL++W+HP 
Sbjct: 1130 NFQFYQADMNASALERLELESDLRHAQEQGQFVLHYQPQFSGDGRRLTGVEALLRWNHPG 1189

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G +  ++F+ + EEL ++  +  ++LE   R + +W D+    P  I +N++++   + 
Sbjct: 1190 RGLVPPTDFIPVLEELGLVVQVGEWVLEEACRQLKAWHDEKIRIP-KISVNLSARQFAEG 1248

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +L   + A++ +T  +P+ +++  +ES++M +   +   LG L+++G+ + +DDFGT  S
Sbjct: 1249 DLSARIAAILERTGVAPACLEVELTESILMRDVASAMQTLGELKRLGLCIAVDDFGTGYS 1308

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +     ++ 
Sbjct: 1309 SLNYLKQFPIDVLKIDRSFVDGLPDGEQDAQIARAIIAMAHSLNMMVIAEGVESHAQLEF 1368

Query: 927  LTRMGCDYIQDSHVASPLGFNSI 949
            L   GCD +Q   +  P+     
Sbjct: 1369 LREHGCDEVQGYLLGRPMQPRQF 1391



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      +Q +    +R  L      D+++  D        +P +  +LG +  
Sbjct: 687 IGVAKDITEQIERNQSLRDSEQRYRLLAESISDVIFSTDSALHLNYVSPSVEPVLGYSVD 746

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR-------------AADN 490
            +       L   +    +    +L+        R + E R+R              AD 
Sbjct: 747 WVMANSFYSLAA-NPQQLNGLNLLLERIRDSLGERDRLE-RLREELPDQLFVFDCLRADG 804

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               + +R+  M + NG     +G+  DI++Q+++ + +   A 
Sbjct: 805 HKIPVELRLVLMWDENGRFEGILGVGRDISQQRRAEKDLRMAAT 848



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGS 444
            I  + +       +       S  V    D+++  D+   RV  +   +   LG +   
Sbjct: 556 SISDITSRKRIELSLIERERFWSEVVRSVPDLLYVHDMQNKRVLFSNHSLGLQLGYSKTE 615

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     + W   +H +D D +  I +   V      L+   R R  D Q+ W  IR + +
Sbjct: 616 LKAMEGDFWERVLHPDDSDYYWRIRNLQKVVGDGLLLESVLRWRHRDGQWRWFSIREQAL 675

Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             +  G + R IG+A DITEQ +        + +D+
Sbjct: 676 ARDERGRVSRLIGVAKDITEQIE-----RNQSLRDS 706


>gi|224827145|ref|ZP_03700241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Lutiella nitroferrum 2002]
 gi|224600654|gb|EEG06841.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Lutiella nitroferrum 2002]
          Length = 2093

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 151/595 (25%), Positives = 291/595 (48%), Gaps = 13/595 (2%)

Query: 368  QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              A    + L   ++  ++   +       + +     +       + + ++        
Sbjct: 1490 MLASQVAISLQNAMLYASLSTEITEHTRTEEELRLAEAKYRDIFDNATEGIFRTSADGQL 1549

Query: 428  VTTTPDIATILGL-ASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            +   P +A ILG  +   + G  +  L   ++H  + +    ++      R     +EF 
Sbjct: 1550 LMANPSMARILGYDSPDQLVGHGQAGLVQHFVHGEEMEELLRVIRRHDAIR----NFEFH 1605

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             R  D     + +    + +  G++  Y G+  DI+E+K+    +   A  D LT +PNR
Sbjct: 1606 GRRTDASVVELSLSAHAIRDVRGEVQFYEGMLQDISERKRLEAQLQHQATHDALTCLPNR 1665

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               LDRL   +  +      +  V  ID+D++K IND  G  VGD++L  + +R+   L+
Sbjct: 1666 NVLLDRLAQAIAHAKCHGE-QCAVCFIDLDRFKWINDSFGHDVGDELLKIVAQRMSASLR 1724

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              D++AR+ G+ F ++L    ++  +A     +   +  P+ L  R +TVT S+G++ + 
Sbjct: 1725 ESDMIARIGGDEFVLLLRGFGDAESVAHIVNRVADCLTEPLLLAGRYLTVTCSMGYSIYP 1784

Query: 665  SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYL 722
            +   T++E+L+ A++AM+HAK RG N+V+++R       +++V ++ +L  A+  ++L L
Sbjct: 1785 ADGQTAAELLRFADMAMFHAKERGRNNVQAYRPELSQRVNEKVRMEAELRHAIARNQLVL 1844

Query: 723  VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
             Y P + L   +IVG+EAL++W HP+ G +  S F+ +AEE  +I+ I  +++ +     
Sbjct: 1845 YYQPQVDLCSGDIVGVEALLRWQHPELGLVLPSRFIALAEETHLIEPIGEWVIRQSCLQG 1904

Query: 783  ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             +W++    P I + +N+++  L  + L   +   ++ +   P  ++L  +ES  M +PE
Sbjct: 1905 KAWQEAGL-PAIPVSVNLSTVQLQGSGLEAMVAQCLADSGLDPHCLELELTESASMSDPE 1963

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900
            ++  L+ RL+  GI L +DDFGT  S + YL   P D +K +GS +   T     +AI+ 
Sbjct: 1964 KNTALMHRLKAQGIGLAIDDFGTAYSNMYYLKNFPVDKLKLDGSFVREITSDVRSLAIVD 2023

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +I  MA  +   +IA+    E  +  L    CD +Q  + + PL      +LL+ 
Sbjct: 2024 AITVMAHRLGVKVIAEMAETEQQVVLLRAHDCDQVQGYYFSEPLPAEDCARLLRA 2078


>gi|222530683|ref|YP_002574565.1| PAS/PAC sensor-domain containing diguanylate
            cyclase/phosphodiesterase [Caldicellulosiruptor bescii
            DSM 6725]
 gi|222457530|gb|ACM61792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor bescii DSM 6725]
          Length = 1016

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 149/569 (26%), Positives = 275/569 (48%), Gaps = 11/569 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            S+ +  + E+    V    D +W+ D    ++     +     +           WL + 
Sbjct: 446  SEMLMEEKEKYKFLVENVSDCIWEIDFNEKKIEFYGKLKDQFDIDVIKSKNDFSAWLEFF 505

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +DR      L   +     ++++E R+R     + W+   ++ + N      + I + 
Sbjct: 506  HEDDRATVFKKLQDAILLHEEKVEFESRIRDKHGNWRWISSHVQILYNEEDKPEKIIAVN 565

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D T +K+    I   A+ D LT +PNR+ F DRL +++  +  D+  +  V++IDID +
Sbjct: 566  IDWTAKKEYEHRIEYIAYYDALTNLPNRKLFEDRLESLIKKA-EDEKTQGAVVLIDIDNF 624

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633
            K IND+ G   GD+ L+++T++I E L         AR+ G+ F +IL       ++ + 
Sbjct: 625  KDINDLYGHEAGDEYLIAVTKKILEYLNSIKLNTFFARVGGDEFAVILDGLAKKEEVIEV 684

Query: 634  AIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               +       I + + E  I  +ASIG + +     +  E+ +N ++A+  AK  G N 
Sbjct: 685  CTKLLGIFESEIYIQKIEGCIFTSASIGVSFYPDDGRSVKEIFRNVDMALSSAKENGKND 744

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + F   +      ++ I++ L  A+E  +  L Y P+I L D EI  +EAL++W  P+ 
Sbjct: 745  FQIFMPFMLMKNFKKIEIEKSLKKAIEADQFELYYQPVINLKDMEIHSVEALLRWVSPEK 804

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G IS  EF+ +AE+  +I  I   ++E+   D+ +W  +     + + INI+++ L    
Sbjct: 805  GIISPLEFIPVAEDSGLIVKIGEMVIEKAFSDLKNWEKKGISY-LHMAINISARQLKTKF 863

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
              + +Q  I +   +P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S 
Sbjct: 864  FEKMIQKQIERYGVNPQKISFEITETGAVENFDVSLKILSFLCQLGIKFLIDDFGTGYSS 923

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L YL  +P   VK + S ++    +++  AI+  II MA  ++  +IA+ +  + +++ L
Sbjct: 924  LIYLRRLPIGGVKIDRSFISEIELSKESRAIVEGIILMAHKLDLKVIAEGVETKRELEIL 983

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +GCD+ Q    + P+    I KLL ER
Sbjct: 984  KEIGCDFAQGYLFSKPVPKTEIEKLLIER 1012



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 54/164 (32%), Gaps = 2/164 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           N  I  + +  L++I+      +           +G  +  +   L    +  IV   ++
Sbjct: 258 NRQILLSALYLLIIILFAASVIIFVMTRINRGLERGKQAYEKYAQLLAENANAIVLTLNL 317

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             + +        I G  S  + G    W+     + R  +   L   +   +    +E 
Sbjct: 318 KGEIIYFNKFAEQITGYKSEEVVGKK--WVDIFIPSHRREYIENLFKRISEVKILNDHEN 375

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +   +    W++     + N   +    I    DIT+ K++ +
Sbjct: 376 EIVTKNGDTRWILWNNTLIENPYLNEPLIISTGLDITQIKRTQQ 419


>gi|320353529|ref|YP_004194868.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122031|gb|ADW17577.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 996

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 143/578 (24%), Positives = 269/578 (46%), Gaps = 13/578 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  +       Q +    +    A+ G G      D     V        I G +   +
Sbjct: 415 ILTEIRERIQAEQQLMLYHKAFEHALEGIGI----TDQEGTLVAVNQAFCDITGYSQPEL 470

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L   H  D+  +R +  S      GR   E   R  + + +  I+ I  + + 
Sbjct: 471 LGRNMRLLKS-HRQDQSFYRQMWTSLRT--TGRWTGEIWNRRKNGEIYPEILSISTIYDE 527

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              +  ++ + +DITE K+  E I+  A+ D LTG+PNR    DR+   +  +    + +
Sbjct: 528 RRAVAHHVAVFHDITEMKRQEEQIIHQAYHDMLTGLPNRLLANDRIEVSIAHARRSGS-K 586

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K  ND LG   GD +L+ +  R+   ++  D +ARL G+ F I++ +  
Sbjct: 587 LAVLFLDLDNFKNTNDSLGHEWGDKLLLGVANRLVSQVREEDTVARLGGDEFLILVAALA 646

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   + D A  + +S+A P N+ + E+ VT SIG A +     ++  + K+A++AMY AK
Sbjct: 647 SEEVVIDLAKRLLRSLAAPFNIDDTELFVTVSIGVAFFPEDGSSAGILTKHADIAMYEAK 706

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N    F             ++ +L  AV N E  + + P I  ++  + G EAL++
Sbjct: 707 ARGKNRYCLFTSDLSERIVFLRQLENNLRQAVGNREFTVFFQPKIDPVNGTMTGAEALVR 766

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       ++ ++F+ +AEE  +I  +   +LE+    + +  ++   P + I +N++  
Sbjct: 767 WRKEDGTIVNPADFIPLAEETGLIIPLGEQVLEQACHML-TILERLGRPELSIAVNLSPL 825

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             + N L E + A++ +   +  R++L  +E+ +M N  ++   L +L   GI++ +DDF
Sbjct: 826 QFVQNNLVERILAMLDRHGIAHDRLELEITETAMMTNLAKTVDTLNQLAGAGIAIAVDDF 885

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P  T+K + S +           ++ +II MA N+   ++A+ +   
Sbjct: 886 GTGYSSLSYLKRFPIRTLKIDRSFIRDLTRDPSDDQLVETIILMAHNLGIHVVAEGVESA 945

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
             ++ L +  C+ IQ    + PL   + L  ++   P+
Sbjct: 946 EQLEWLKQRRCEQIQGYVCSRPLPHEAFLAFIERSVPV 983


>gi|224827054|ref|ZP_03700151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224600720|gb|EEG06906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 887

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 152/591 (25%), Positives = 272/591 (46%), Gaps = 15/591 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVT 429
             L   ++       ++ +             E Q LA+       + V   D  R  + 
Sbjct: 295 ANLTAALMRDEGGRPEYFILVVEDISARKQSEEAQQLALTVFDSMLEGVIITDHHRRILA 354

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                  I      ++ G         H  D   +R I    +    GR + E   R  D
Sbjct: 355 VNAAFGEITRYPVEALLGRTPPLWRTAH-QDAAFYRRIWRQLLA--SGRWEGELWHRKRD 411

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                + + I  + +  G   +Y+ + NDI++ K S E +   A  D LTG+PNR   L 
Sbjct: 412 GTPFPLWLSISCVRDEQGRPRQYVFVFNDISQLKDSQEQLERLAHYDPLTGLPNRHLALA 471

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL   L+ +         VM ID+D++K IND LG   GD++LV++ +R+ + L+  D L
Sbjct: 472 RLEHALERARRHA-FPLAVMFIDLDRFKTINDSLGHQAGDELLVAIAQRLHQRLRQEDTL 530

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKI 668
           ARL G+ F +++  E    ++A  A A+ K +  P       E  V ASIG + +     
Sbjct: 531 ARLGGDEFLVVIE-EAPVQQVASIAHALLKVVDQPFGFSGGGEAYVGASIGISLYPGDGR 589

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHP 726
           ++SE+++NA+ AMY AK +G N    +  S     ++R+ ++  L  A+   E  L Y P
Sbjct: 590 SASELIRNADAAMYLAKAQGSNAYRFYTESLTRAANERLSMETSLRRALRCEEFVLHYQP 649

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           ++ L    ++G E L++W  P    +  S F+ +AEE  +I  +  ++L    R   +W 
Sbjct: 650 LVELASGRVLGAEVLVRWQPPGEALVPPSRFIPLAEETGLIVPLGDWVLHEACRQGKAWL 709

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D     P+ + +N++ +  L ++L   ++  +  +   P++++L  +E  +M   E++  
Sbjct: 710 DAG--LPLLLAVNLSPRQFLRHDLVGQVRKALQGSGLPPAQLELELTEGALMEQAEQAVK 767

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            L  L+++G+SL +DDFGT  S L+YL   P D +K + S +           I+ +II 
Sbjct: 768 TLHALKRLGVSLAIDDFGTGYSSLAYLKRFPLDKLKIDRSFVRDLPRDSSDAEIVTTIIA 827

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           M +N++   +A+ +     +  L ++GCD  Q    + PL   +  + L++
Sbjct: 828 MVRNLKLEALAEGVETPQQLAFLRQLGCDSGQGYLFSPPLPAEAFERWLRD 878



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/327 (10%), Positives = 85/327 (25%), Gaps = 15/327 (4%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF---LFMYLHWNRWHA 280
            A   + +I +   FL+ L       +++        ++   ++    +   L       
Sbjct: 14  FALAGVLWIVLSDRFLASLPVSTQTLMMLQTYKGMGFVAGISLLLYYLVRRALKSQAQLL 73

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY------ 334
                  +      +   +  +           + A+  L           +G       
Sbjct: 74  VQLRRNQALFQEAQLSAQLGSWEYDSARREFLWSGAARQLLGLPASETRTERGTLLQRVA 133

Query: 335 --ERAVLLIPAWILIFIWFIGLWMAITKRLDNDII-QPALVGGLVLIVILIGFTVIQHVL 391
             +RA +      ++      +           +  +      L      +   V+Q + 
Sbjct: 134 AGDRARVATVLDAMLAEGSGSVEFCRAGTGAAPVWLRLHYQVHLDEEAPGLVLGVLQDIS 193

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    +        +   +    +    +     +  ILG +   +      
Sbjct: 194 VQKAQDDALREREQLFRGTFEQAAVGIAHLGLDGHWIRVNQRLCDILGYSREELL--RLT 251

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H  D+D+   +    +         E R R    Q  W  +    M +  G    
Sbjct: 252 LQDITHPADQDSDLVMTRRLLSGEIPSFSIEKRYRQRRGQLVWANLTAALMRDEGGRPEY 311

Query: 512 YIGIANDITEQKKSLE-GILCNAFQDN 537
           +I +  DI+ +K+S E   L     D+
Sbjct: 312 FILVVEDISARKQSEEAQQLALTVFDS 338


>gi|56476628|ref|YP_158217.1| hypothetical protein ebA2147 [Aromatoleum aromaticum EbN1]
 gi|56312671|emb|CAI07316.1| conserved hypothetical protein, contains PAS domains [Aromatoleum
           aromaticum EbN1]
          Length = 740

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 151/563 (26%), Positives = 273/563 (48%), Gaps = 15/563 (2%)

Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH 457
            + +R +L       S D +   D +   V+      T+ G ++  + G   +      H
Sbjct: 185 REEDRLNLIAQVFERSTDAIMITDSLNRIVSVNRAFTTVTGYSADEVLGRNPKLLASGRH 244

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DRD +R +  +    R G    E   R  + + +   + I  + N +G I   I I  
Sbjct: 245 --DRDFYREMWSAI--ERNGSWSGEISNRRKNGEIYNEWLTIHAVRNESGGIENCIAIYA 300

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +IT+Q+ +   I   A  D LT +PNR    DR+   L  +A  +  R  V+ +D+D++K
Sbjct: 301 EITDQRAAASRIQFLAHYDPLTLLPNRALLQDRMHQGLAHAAR-EGTRAAVLFLDLDRFK 359

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG  VGD +L  + +R+   ++  D +AR  G+ F ++L   +++ + A  A  +
Sbjct: 360 TINDSLGHLVGDHLLQEVAQRLKASVREDDTVARRGGDEFIVMLPHVDSAEQAAHVAGKI 419

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +++   I +    + V+ SIG + +    +    +++NA++AMY +K  G N  + F  
Sbjct: 420 IEAMEQTIPVNGYVLNVSFSIGISVFPDDAMDPDTLIRNADIAMYRSKASGRNQFQFFTA 479

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +R+ ++ DL  AVE  E  L++ P        I+G EAL++W HP+ G ++ +
Sbjct: 480 DMNAHALERLALENDLHRAVERGEFRLMFQPQFEG-SGSIIGAEALLRWQHPQRGLVTPA 538

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  +I  I  ++LER  + + +WRD      I + +NI++       L E ++
Sbjct: 539 EFIPVAEETGLIVPIGTWVLERACQQVRAWRDAGLK-KITVSVNISALQFSQKNLLELIR 597

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++ +   P  ++L  +ESV+M +   +  L+  L+++G+ + +DDFGT  S LSYL  
Sbjct: 598 RLLAVSNIEPGTLELELTESVLMHDHVATSGLMSELKEMGVRMAIDDFGTGYSSLSYLRS 657

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P   +K + S +   ++     AI  +II +AKN+   +IA+ +        L    CD
Sbjct: 658 FPISKLKIDQSFVRDLSDGGDAGAITGAIIGLAKNLNMRVIAEGVETAQQASFLQAQCCD 717

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q    + P+      +LL+  
Sbjct: 718 EFQGHFFSQPVSPEKFAELLRAE 740


>gi|302341977|ref|YP_003806506.1| diguanylate cyclase/phosphodiesterase [Desulfarculus baarsii DSM
           2075]
 gi|301638590|gb|ADK83912.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfarculus baarsii DSM 2075]
          Length = 703

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/615 (23%), Positives = 266/615 (43%), Gaps = 12/615 (1%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATGYFSQGIFSDGE 405
               +   +                  L++ V         +  V+      Q      E
Sbjct: 80  LGGCLAAALGPEPWAVQWADSQGRRRLLLVAVTKDDCRARGLAGVIVDQTGQQAHRERAE 139

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                +  + + +   D     +      + + G  +  + G    +L Y H +      
Sbjct: 140 LLDQVLECASEGIMVTDRDGHIIMVNRGFSELTGFDAVEVIGRTPEFL-YPHDDHHGGHG 198

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            I         GR + E      + Q +  ++ ++ +    G +  Y+G  +DIT  K++
Sbjct: 199 QIWRELAA--TGRWRGEVASLRKNGQAYPQLLHLQAIKGPGGQVRNYVGDMHDITSIKRT 256

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I    + D LTG+PNR  F DRL   L  +    +    V+ +D+D +K +ND LG 
Sbjct: 257 EEQIAHQVYHDPLTGLPNRLLFQDRLEMALAHAKRQRDG-VAVLFMDLDNFKHVNDSLGH 315

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD +LV++ RR+   ++  D +ARL G+ F  +L       +    A  M   +A P 
Sbjct: 316 AAGDKLLVAVARRLLAKVRREDTMARLGGDDFLFLLPETAGEDEAGQVAQQMLDELARPF 375

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
            L  +++ + AS+G A + +   T  +++ NAELAMY AK         F    +     
Sbjct: 376 RLGGKKLHIRASVGIALFPNDGQTPEKLIANAELAMYRAKEGCREGYCFFEPALNQKVRH 435

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++  L  A++  E  + Y P I L     VG+EAL++W  P  G IS  EF+ +AEE
Sbjct: 436 RLELENRLRTALQKEEFLVCYQPKIDLASLRTVGVEALVRWRRPGVGLISPGEFIPVAEE 495

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  ++L +  +    WR+Q     + + +N++ + LLD +L   +   + ++  
Sbjct: 496 TGLIIPLGRWVLRQACQQAQRWREQGRQ--LSVAVNLSPRQLLDPDLTRAVAEALEESGL 553

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P +++L  +E+ VM + E +   L  L  +G  L +DDFG   S L +L  +P D +K 
Sbjct: 554 PPEQLELEITENAVMPSLELALGRLAELAALGARLAMDDFGRGYSSLYHLHRLPIDILKV 613

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +   T      +I+ +++ M +++   ++A+ +  +  ++ L  MGC  +Q    +
Sbjct: 614 DQYFIKEMTPHSRVSSIVEAMVAMGRSMGLVVVAEGVENKRHLEMLAGMGCHQLQGFLFS 673

Query: 942 SPLGFNSILKLLKER 956
            PL    +   L   
Sbjct: 674 RPLEPPRLEDYLARE 688


>gi|117922261|ref|YP_871453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117614593|gb|ABK50047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1505

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 146/555 (26%), Positives = 273/555 (49%), Gaps = 18/555 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----INDRDNFR 465
             +    + V    +     +  P  + I G +   +          IH       RD F 
Sbjct: 959  VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKY-----LIHLAYSRQQRDLFN 1013

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +I    + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+
Sbjct: 1014 SIEQQLLRHK--HWAGEIWIRNRARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKA 1071

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G 
Sbjct: 1072 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNI-VALLFLDLDRFKHINDSMGH 1130

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             +GD +L ++  R+   ++  D +ARL G+ F IIL     +      +  + K+   P 
Sbjct: 1131 HIGDLLLKAVAHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF 1190

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
             L ++ +T++ SIG + + +       ++K A+ AMYHAK  G N+ + +    +   + 
Sbjct: 1191 LLDDKSLTISTSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATR 1250

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V ++  L  A+  +EL LVY P   L    + GLEAL++W H + G IS +EF+ +AEE
Sbjct: 1251 HVQLEAGLKQAISRNELSLVYQPKFCLRKGSLTGLEALLRWHHSELGPISPAEFIPLAEE 1310

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  +++    + +  W +      I + +N++++ L   ++   ++  +S +  
Sbjct: 1311 TGIINQIGHWVINHACQQLAEWNELGFG-DISMAVNLSARQLK-ADIISTIEVALSVSGL 1368

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K 
Sbjct: 1369 PAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKI 1428

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++
Sbjct: 1429 DREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLS 1488

Query: 942  SPLGFNSILKLLKER 956
             PL     L LL++R
Sbjct: 1489 KPLSAQDCLALLQQR 1503



 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 11/182 (6%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
               + +           ++   +     +G +  IV+       Q       F   I +
Sbjct: 776 GSYALLVDLTVKAPFYRSQIAYALYVLLALGLMGWIVL----WRKQKREQQQEFETSIRA 831

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ER  LA+  SGD +WDW+I   +V  T     +   +S ++           H  DR+
Sbjct: 832 SEERLKLALWASGDGMWDWNIQEQQVYRTHTDIPVSQWSSHTLLHDNA------HPEDRE 885

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITE 521
            F+ +L   +       + E+R+  +   + W++ R + + +N+    +R  G   +IT 
Sbjct: 886 RFKQVLTDHLQGHTPFFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTGTTRNITS 945

Query: 522 QK 523
           +K
Sbjct: 946 RK 947


>gi|295675479|ref|YP_003604003.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. CCGE1002]
 gi|295435322|gb|ADG14492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. CCGE1002]
          Length = 1055

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 152/555 (27%), Positives = 268/555 (48%), Gaps = 14/555 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G     + G     L     +DRD 
Sbjct: 496  QSRALDASVNAILITAPSPSGNLIEYVNPAFMRITGYDLDEVIGHDCRVLQR---DDRDQ 552

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ N+ G I  +IG+ ND+TE 
Sbjct: 553  EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPNAEGVITHHIGVINDVTEL 611

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D LT +PNR    DRL   L ++    +    V+ +D+D +K +ND 
Sbjct: 612  IRYQEQLEYQANYDGLTRLPNRNLLRDRLEHALVVAQRH-HTGVAVVFLDLDGFKNVNDS 670

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  D +AR  G+ F I++    +   +  +   +R SIA
Sbjct: 671  LGHSVGDRLLGVVAERLARCSRTSDTVARHGGDEFVIVMTDTVDEQSLITWMERVRASIA 730

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A++AMY AK  G N  + ++     S
Sbjct: 731  EPVWLDGTELYVGCSMGASLFPQDGDDAETLMKKADVAMYRAKDMGRNTFQFYQPEMNAS 790

Query: 703  D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ ++E  L Y P + ++  +IVG+EAL++W  P+ G +  S F+ +
Sbjct: 791  AGARLNLERRLRRALRDNEFLLHYQPQVDIVSGQIVGIEALVRWHDPEAGLVPPSSFIPL 850

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+DQ   PP  + +N++++      + + +  ++++
Sbjct: 851  AEESGLIGPLSEWVLREACRQNKAWQDQGL-PPARVSVNLSARVFQQRNIAKLVMQVLAE 909

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E + L+L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 910  TGLEPRYLELELTESTIMRNAEEAVLMLNELHALGIGLAIDDFGTGYSSLSYLKRFPVDR 969

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 970  LKIDRSFVSDIGVSGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1029

Query: 939  HVASPLGFNSILKLL 953
            + A PL    I +LL
Sbjct: 1030 YFAKPLSTEGISELL 1044



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 16/167 (9%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L  +     F +   V              +     +      ++  D+    +      
Sbjct: 341 LNFMGRDASFVLADDVTDQINAEAEALRSNQMLEAVIDNIPQRIFWKDLNSRYLGCNMAF 400

Query: 435 ATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           A   GLA    + G      P R +   ++ +DR+   T +           + +F +  
Sbjct: 401 ARDAGLAYPEQVVGKSDTDLPWRAFADLLNEHDREVASTGVPKM------NFEVDFVI-- 452

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            D      +    P ++ +G ++  +G   DITEQK++   +   + 
Sbjct: 453 -DGVHRTRVTSKLPFTDGDGQVIGVLGSYTDITEQKRADLALRLQSR 498



 Score = 42.6 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++   ++ G VL+++  G      V      ++ +  + ER           ++ +D   
Sbjct: 206 VLLVTMLSGSVLLMLTFGVRENS-VREKLRSARALARNDERFRSLFDDHTVPMYIFDRDT 264

Query: 426 -DRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVG-YRRGRLQYE 482
              +          G       G     +  I    +       L       +   +   
Sbjct: 265 LRFLAVNTAAIEQYGYTESEFLGMT---IRAIRPTSEVARLERHLARSADLRQSHTMAGI 321

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +R R  D     + +    + N  G    ++ +A+D+T+Q  +    L
Sbjct: 322 WRHRRKDGSIISVNVSYHAL-NFMGRDASFV-LADDVTDQINAEAEAL 367


>gi|257093885|ref|YP_003167526.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046409|gb|ACV35597.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 978

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 146/566 (25%), Positives = 265/566 (46%), Gaps = 12/566 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454
               +       + A+  + D V   D+    ++  P  + + G  +    G   R    
Sbjct: 272 AGHALAERQRLHATALESTRDGVLIADLTGRIISVNPAFSEMTGYTAAEAIGRNPRLLQS 331

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  DR  ++ +  S    + G  Q E   R AD + +     +  + + +G    Y+ 
Sbjct: 332 GRH--DRAFYQAMWASL--TQAGHWQGELWNRRADGEIYPQWATLSVVKDEHGQPTHYLA 387

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D+++ K   E +   A  D LT +PNR      L   L+ +         V+VI++D
Sbjct: 388 VFTDLSKLKHREEELEHLAHYDPLTDLPNRLLLRSLLQHALERAQRQGGKS-AVLVINLD 446

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG A+GD++L+ +T R+   L+  D++ RL  + F  IL +  ++      A
Sbjct: 447 QFKNVNDSLGHALGDELLLGVTARLKARLRHEDVVGRLGADEFVAILEASQDAENAGSIA 506

Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  ++A P  L    E    ASIG + +      ++++L++A++AM+ AK RGGN   
Sbjct: 507 GDLLAALAPPFVLADGHETYARASIGISVFPQDGKGANDLLRSADVAMHRAKQRGGNQYA 566

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +          R+ ++  L  A+   EL L Y P + L    IVG EAL++W  P +G 
Sbjct: 567 FYTGELGHGALQRLEMETALRRALIQGELVLHYQPKLDLASGVIVGGEALLRWQRPGFGL 626

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AEE  +I  I  +++    R I +W  +A  P + + +N++++     EL 
Sbjct: 627 VPPYRFIPLAEETGLIVPIGAWVINETCRQIRAW-AEAGQPSVMVAVNVSARQFAGGELE 685

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   + K    P  + L  +ES++M  PE++   L  LR++G+++ LDDFGT  S LS
Sbjct: 686 AVLATALRKHAVDPRMLGLELTESMLMAAPEQATERLDALRRVGVAVALDDFGTGYSSLS 745

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P D +K + S +T      K   I  ++I +A  +   ++A+ +  E  +  L +
Sbjct: 746 YLSRFPVDELKIDRSFITHIVSDPKAANIATAVIALAHRMALKVVAEGVETETQLSYLRK 805

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
             CD IQ    ++P+  +    L+ +
Sbjct: 806 NRCDQIQGYLFSAPVPADEFATLVSQ 831



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 52/160 (32%), Gaps = 8/160 (5%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDI 434
           +  +I     Q        S  +      + L +     +++   +    +     + +I
Sbjct: 131 LAGVIEDAARQARF--RQESSSVRPATTHRQLVLSAGPTVLYACGVDGQSLVPLWVSDNI 188

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +          W+ ++H  DR +        +    G L  E+R R       W
Sbjct: 189 TRVLHFSPAECLA-PDWWVSHVHDADRAHVLETWPRLLA--DGSLLQEYRFRDGQGVVRW 245

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    R + ++N   L  +G  +D+T      E    +A 
Sbjct: 246 LRDHKRLLFDANHQPLAVVGNWDDVTAGHALAERQRLHAT 285


>gi|83594467|ref|YP_428219.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577381|gb|ABC23932.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 855

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 146/570 (25%), Positives = 260/570 (45%), Gaps = 12/570 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +                 + +   +      T  P    + GL    M G  
Sbjct: 273 TVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRP 332

Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R +   +H ND   F   + + V  R G  + E      +   +   + +  +    G+
Sbjct: 333 ARLFASGLHEND---FLATVAAEVD-RAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGE 388

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              Y+    DIT++K+  E I   A  D LT +PNR   +DRL   +  +      +  V
Sbjct: 389 TTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGR-QVCV 447

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D++K+IND  G + GD+VL    RR+   ++  D + RL G+ F +IL +  +  
Sbjct: 448 MFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQH 507

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A  A  +  S++ P  +   E+    S+G   +     T+ ++L+NA++AMYHAK  G
Sbjct: 508 AGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGG 567

Query: 689 GNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 F     R     + ++ DL  A+   E  L + P +R  D  ++G EALI+W H
Sbjct: 568 ERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVR-ADLTLIGAEALIRWRH 626

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G I+  +F+ +AEE  +I  I  + L      ++SWR +    P  + +N++ +   
Sbjct: 627 PEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIP-SVSVNVSPRQFQ 685

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E ++ ++ +T   P  + L  +E+V+ G+ E +   L  L+ +G++L++DDFGT 
Sbjct: 686 DQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTG 745

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P DT+K + + +     + K  AI+ +II +A+N+  +++A+ +      
Sbjct: 746 YSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQA 805

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + L    C   Q    + PL        L+
Sbjct: 806 EFLGSRDCQNFQGFLYSRPLPPAEFTTFLR 835



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 70/261 (26%), Gaps = 15/261 (5%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           I     A +      +            I  A+  L          + G      L PA 
Sbjct: 32  IAEGLSAALFQSVVEALPVGTALLRDGVIVHANATLAGQIGETIDTLIGSPLTSYLTPAD 91

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------------TVIQHVLA 392
            L     +   +A+   +    I           V  + F             + + + A
Sbjct: 92  ALAVQKVVEGAIALHGGVPVRRIAHIRHISGSERVYSLRFSPLDNGPHPLLVVITRDMTA 151

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRN 451
                  + +   +       + + ++        +   P +A I G  +   +     +
Sbjct: 152 QVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTD 211

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               ++++            +        +   V   D    W+    R +   + ++L 
Sbjct: 212 IASQLYVDGTKRGE--FQRLMRETGEVRDFTAEVWRCDGHTIWITENARCVRGPDNEVLY 269

Query: 512 YIGIANDITEQKKSLEGILCN 532
           Y G   DIT Q++S E +   
Sbjct: 270 YEGTVEDITAQRQSQETMRLL 290


>gi|296391416|ref|ZP_06880891.1| motility regulator [Pseudomonas aeruginosa PAb1]
          Length = 1385

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 147/568 (25%), Positives = 265/568 (46%), Gaps = 15/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    +    +     S   +   D     V      + + G +   +       L   
Sbjct: 815  QRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQPRLLT-- 872

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +          G  + E   +    + +   + I  + +  GD++ ++  
Sbjct: 873  --ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAVRDEEGDLVSFVCF 930

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +M +D+D+
Sbjct: 931  FSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVLMFLDLDR 989

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +      +  
Sbjct: 990  FKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDREIALKRAI 1049

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHAK  G N+
Sbjct: 1050 QVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHAKEMGKNN 1109

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL++W HP+ 
Sbjct: 1110 FQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRR 1169

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N++++   D +
Sbjct: 1170 GLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSARQFADGQ 1228

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DDFGT  S 
Sbjct: 1229 LGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSS 1288

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  +  +  L
Sbjct: 1289 LNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFL 1348

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               GCD +Q      P+       L   
Sbjct: 1349 REHGCDEVQGYLFGRPMPAEQFGMLYAS 1376



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 535 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLHARRVIFSNHHLGQQLGYNQEE 594

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 595 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 654

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 655 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 693



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 23/168 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 666 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE 725

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRRGRLQY-EFR-----------VR 486
                    L  +H              +L         R +  E R             
Sbjct: 726 W------ALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDCL 779

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            AD +   + +RI  M + +      +GIA DI++Q+++   +   A 
Sbjct: 780 RADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 827



 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425
           GG + I +L+    +  +L      QG+            + + A+    + V       
Sbjct: 223 GGELAIFLLLVGVTVYMLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 282

Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRG 477
                 P    + G++S       +   LP +          D +    +L   V     
Sbjct: 283 RLSYLNPQAERLFGISSAQARQHHLLGLLPDLEPGWLTDTGGDGETRSELLPLRVRGEPR 342

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    A+          +R      G     + +  D+TE++ +
Sbjct: 343 TFTLSRHPLASYPALADQAWTLREQILQGGQ----VWVLRDVTEEQHA 386


>gi|320353827|ref|YP_004195166.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122329|gb|ADW17875.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 740

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 149/576 (25%), Positives = 272/576 (47%), Gaps = 9/576 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  + A       +       S     S   +   D  R+ V        + G  +  
Sbjct: 163 GTVMDITARKEAELELEVQRAYFSQLFANSPQAIVIIDTQRNVVNCNHGFEQLFGYRAVD 222

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G        I   +       L + +      +Q E + R  +     + +   P+  
Sbjct: 223 IIG--FGMRALIVPEELLVECEKLRNAIL-DGETVQCETQRRHRNGTLIPVDMIGFPIR- 278

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
               I   I I  DI+E+K   + I   AF D LTG+PNR  F +RL   L+ S     L
Sbjct: 279 VGQSINGIIYIYQDISERKSFEDQITHQAFHDALTGLPNRTLFGERLQRALERSRRRPEL 338

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID++K+K IND LG   GD +L+ + +R+   ++  D +ARL G+ F IIL   
Sbjct: 339 YYAVLMIDLNKFKAINDSLGHPAGDQLLIEVAKRLSVCVRSVDTVARLGGDEFAIILEEF 398

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               ++   A  M   +  P +L   +IT  ASIG     +   ++ E+L++A++AMY A
Sbjct: 399 TARKELLKAARRMHSILCEPFSLYGNDITPGASIGIVPKIADYTSAEEILRDADIAMYRA 458

Query: 685 KHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           K +G   V    R+     + + ++ +L   + +  L L Y PI+ ++DE + G EAL++
Sbjct: 459 KQQGKGIVLFDKRMHQELVESISLEAELREVLAHDGLILHYQPIVSVLDECLQGFEALVR 518

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802
           W+HP  G +    F+ +AEE  +I  +  +++    R + SW+        + + +N++ 
Sbjct: 519 WNHPLRGMVPPDRFIPLAEENGLIVDLGKWVIAEACRALKSWQQSIDGTAGLTMSVNVSC 578

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L    L E +  ++     +P  +K+  +ESV+M + +R+   L RLR +G+ + +DD
Sbjct: 579 RQLTKPGLVEHVTEVLEHNQLNPRCLKIEVTESVLMHDVDRAINELNRLRALGVQIAIDD 638

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIY 919
           FGT  S L+YL  +P D +K + S ++G  E   +   I+RSII +A+++   ++A+ + 
Sbjct: 639 FGTGYSSLAYLRRMPIDHLKIDRSFISGVEEGIKENDQIVRSIISLARSLGLGVVAEGVE 698

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L ++ CD  Q    + P+      +L+++
Sbjct: 699 SREQLEWLRQLNCDRAQGFMFSRPVDNAKAQELIRK 734



 Score = 84.6 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 106/350 (30%), Gaps = 44/350 (12%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIR 450
                 Q      ER       S + ++        +   P +A I G +    +    R
Sbjct: 42  ELVAAKQDEQKRLERYRSLFNNSLEGIFLTTPDGRYLDVNPTLARIYGFSTPHELINHFR 101

Query: 451 NWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +    ++   N RD F   L          + +E +VR  + +  W+    R + +  G+
Sbjct: 102 DIKHQLYVTPNRRDEFVLTLAR----DNKVIGFESQVRKRNGEVIWISENARAVYDERGN 157

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I  Y G   DIT +K++   +              R  F               N    +
Sbjct: 158 ISYYEGTVMDITARKEAELELEVQ-----------RAYFSQLFA----------NSPQAI 196

Query: 569 MVIDIDKYKKINDVLGIA--VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           ++ID  +   +N   G     G   +  +   +  L+   ++L          +  +  +
Sbjct: 197 VIIDTQR-NVVNCNHGFEQLFGYRAVDIIGFGMRALIVPEELLV-----ECEKLRNAILD 250

Query: 627 SLKIA-DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              +  +     R    +P++++   I V  SI    +       SE     +   + A 
Sbjct: 251 GETVQCETQRRHRNGTLIPVDMIGFPIRVGQSINGIIYI--YQDISERKSFEDQITHQA- 307

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
                H     + +       ++  L  +    ELY     I     + I
Sbjct: 308 ----FHDALTGLPNRTLFGERLQRALERSRRRPELYYAVLMIDLNKFKAI 353


>gi|301382751|ref|ZP_07231169.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302064026|ref|ZP_07255567.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302130707|ref|ZP_07256697.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 825

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 154/581 (26%), Positives = 275/581 (47%), Gaps = 12/581 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++ G   +  +      SQ +       +     + + V   D  +           I 
Sbjct: 234 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 293

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G +     G   R      H  D   + ++         G  Q E   R  + + +   +
Sbjct: 294 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 349

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + N    +  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL + L  
Sbjct: 350 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLH 409

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +L   V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F
Sbjct: 410 SEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEF 468

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L            A  +    + P    E E+ ++ SIG   + +     + ++KNA
Sbjct: 469 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 528

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY +K +G N VES+        S+R+ ++++L  A++ ++L L Y P I L+   +
Sbjct: 529 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQPKISLLTHTL 588

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EALI+W HP +G +    F+ +AEE  MI  I  ++LE+  R + +WR     P   
Sbjct: 589 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAWRK-TCTPFGP 647

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A   L    L E ++ L++     P  ++L  +E+ +M   + +  +L +L+++G
Sbjct: 648 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 707

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S LSYL  +P D +K + S + G  E     AI+R+II + ++++ T+
Sbjct: 708 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 767

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
           IA+ +      + L+  GC+ IQ   ++ PL  +    + L
Sbjct: 768 IAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 808



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 14/156 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA- 441
             V++ + A     Q +    E+ + A   + D +          +        I G + 
Sbjct: 118 LVVVRDITALKQAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 177

Query: 442 SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +     +   W      ++R      L            +  R+R  +       + 
Sbjct: 178 RHCLEHSTFDLGIWADL---SERSRLIEQLKQH----GVVHGFRARLRNVNGSIRVCELS 230

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             P+  S    L  + I+ DITE +   E +   A 
Sbjct: 231 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 264



 Score = 42.6 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 35/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + +     R +       D +     I    +          GL+   + G     L  
Sbjct: 7   REALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEVIGKTPTELDL 66

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    ++  +P     G     + 
Sbjct: 67  WAVPGIGPKVLQQL-----QTGNIHNLEIPFRRKNGRTFSGLMSAQPF--DQGSTPAVLV 119

Query: 515 IANDITEQKKSL------EGILCNAFQ 535
           +  DIT  K++       E     AF 
Sbjct: 120 VVRDITALKQAQQQLQLSEEKFAKAFH 146


>gi|222056656|ref|YP_002539018.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221565945|gb|ACM21917.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 845

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 138/573 (24%), Positives = 258/573 (45%), Gaps = 12/573 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +   L      +      ER       + D ++  D     +        + G      
Sbjct: 279 TLSMTLKNYLLYEERQKSEERYRYLFQNANDPIFIIDRELKFINVNRRAMDLFGYGLDEF 338

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                N +  +        +  L          +L    R          + I   P   
Sbjct: 339 V--AMNMVDLVPEEQIPRIQGELKKMESMEALDKLSTNIR--TKWGYSLNVEISSSPFVE 394

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +++  I I  D+TE KK  + I   A  D LTG+ NR  F+D L   +      + +
Sbjct: 395 RN-NVMGSIHIVRDVTESKKMEDEIRYQATHDILTGLANRMLFMDHLALSISQGHRYNEI 453

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  VM +D+D++K IND LG A GD +L  ++ R+ E ++  D +AR+ G+ + I++   
Sbjct: 454 Q-AVMFLDLDRFKSINDSLGHAAGDKLLQLISGRLKECVRETDTVARIGGDEYNILITQM 512

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +       A  +  S+  P  +   ++ VT SIG + + +    +  +LKNA++A+YHA
Sbjct: 513 AHPEDATAIANKILSSMNKPFAIDGHQLHVTISIGISLYPTDGEDAETLLKNADIALYHA 572

Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N+ + +    ++   +RV ++  L  A+E  EL ++Y P + +   ++ G EAL+
Sbjct: 573 KEQGRNNYQFYNPALNTRTLERVKMENRLRQALERHELVVLYQPQVAMDTGQVTGAEALV 632

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            W HP+ G +S   F+ +AEE+  I  I+ ++LE       +W+D+       + +N++S
Sbjct: 633 YWLHPELGLLSPGHFIPMAEEIGFITDIDEWVLETACAQNKAWQDE-GYRSFNVTVNMSS 691

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K     +L + ++ +++ T   P  ++L  +E   M + E +   L  L  + +   +DD
Sbjct: 692 KQFRRPDLVDQVRRVLNATGLPPRFLELEITEGTAMKDIEYTIPSLNTLTGMEVGFAIDD 751

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS L  +P   +K + S +    +     AI+ +II MA N++  +IA+ +  
Sbjct: 752 FGTGYSSLSCLKKLPIRKLKIDKSFIFGVNTDPNDKAIVATIIAMAHNLKLEVIAEGVED 811

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++ L +  CD +Q    + P+      +L+
Sbjct: 812 ADQLEFLHQNHCDQMQGFLYSRPIPAEDFRRLI 844


>gi|291613347|ref|YP_003523504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583459|gb|ADE11117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 927

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 253/571 (44%), Gaps = 13/571 (2%)

Query: 390 VLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG- 447
           V +T    Q    +  R + +    S + +   D     +   P    + G A+  + G 
Sbjct: 361 VFSTDLTEQKRAEESLRLAAMVYENSSEAILVTDADNLIIAVNPAFEQMTGYAAAEVLGK 420

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             R +    H  DR  F   +   +    G    E   +  + + +  ++ I  + + +G
Sbjct: 421 NPRIFKSGRH--DRA-FYHSMWLALDTE-GYWHGEVWDKRKNGEEYIKLLTINVIRDDDG 476

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I R++ +  DITE+KK  E I   A  D+LT +PNRQ F DRL      +     L   
Sbjct: 477 AIYRHVALFTDITERKKVEELIWRQANYDSLTKLPNRQMFHDRLEQEAKKAHRA-GLSMA 535

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +++ID+D++K++ND LG   GD +L+   RRI   ++  D +ARL G+ F +IL    + 
Sbjct: 536 LLLIDLDRFKEVNDTLGHDKGDILLIEAARRISACVRESDTVARLGGDEFIVILSELEDM 595

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             I   A  +  S+A P  L      ++ASIG + + +       + K+A+ AMY AK+ 
Sbjct: 596 ASIDRVAQDILGSLAEPFKLDAEPAYISASIGISLYPNDATELDVLFKHADQAMYVAKYA 655

Query: 688 GGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F          R+ +  DL +AV   +  + Y PI+ +   +I   EALI+W 
Sbjct: 656 GRNRFNYFTKDMQEAAQARMHLANDLRIAVAAGQFRVYYQPIVEMSSGQIYKAEALIRWQ 715

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +S +EF+ +AEE  +I  I  ++  +  + ++ WR + +     I +N +    
Sbjct: 716 HPVRGMVSPAEFIPLAEETGLIVPIGEWVFRQAVQQVVQWRRKFHR-SFQISVNKSPVQF 774

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              E        + +   S   I +  +E +++         L R R  GI + +DDFGT
Sbjct: 775 RHAESLSW-PEYLEQQHVSGDSIIVEITEGLLLDAEVEVNKKLLRFRDAGIQVAIDDFGT 833

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL     D +K + S +         +A+  +II MA  +   +IA+ +     
Sbjct: 834 GYSSLSYLKEFDIDYLKIDQSFVRNLGPGTSDLALCEAIIVMAHKLGFKVIAEGVETSTQ 893

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + L   GCDY Q    + PL      + L 
Sbjct: 894 HELLAAAGCDYGQGYLYSRPLPPEEFERQLA 924



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 388 QHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           Q  +     ++ +  + E +   A+  + D  W  D+    +      A + G +   + 
Sbjct: 240 QRDITKRKLTEAVMLEKESQYRAAIDTAADGFWLVDMQGRLLEVNDAYARLSGYSREELI 299

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G     L  I  ++ +  R  ++  +    G L+++   +  D     + I     S S 
Sbjct: 300 GMSIPELDAI--DNSELVRARIEEIIRN-GGYLEFDTMHKRKDGSLWPVHISTTYSSVSG 356

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G   R    + D+TEQK++ E +   A 
Sbjct: 357 G---RCFVFSTDLTEQKRAEESLRLAAM 381



 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 4/129 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +    V       +  D     V          G+    + G   +   +      + FR
Sbjct: 8   QVQDIVDSIPAATFIKDAGGRIVYMNHACEEQWGITFDVLGGTDGS--QFFPPEQIERFR 65

Query: 466 TILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                 +   +    +  F   A   +         P  ++ G +L  + I  D+TE KK
Sbjct: 66  EKDREVIAGGKQIEYEAPFWN-AKLKENRIGFFIKNPTFDAEGKLLFLVCITFDVTEDKK 124

Query: 525 SLEGILCNA 533
           +   +   +
Sbjct: 125 AAAALRLQS 133



 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 11/120 (9%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYE 482
                 T     T+ G A G + G   + +      ++    T  +      + G    E
Sbjct: 150 DSTIQYTNRQFETLFGYAPGELIGKHISIINA--PGNKSQMETAQEINRQLEKEGVWSGE 207

Query: 483 FRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQK-----KSLEGILCNAFQD 536
              R  D       +      +   GD+  +IG   DIT++K        +     A  D
Sbjct: 208 VFNRRKDGTTINTFLNASSFQHPELGDL--WIGYQRDITKRKLTEAVMLEKESQYRAAID 265


>gi|170691421|ref|ZP_02882586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia graminis C4D1M]
 gi|170143626|gb|EDT11789.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia graminis C4D1M]
          Length = 1036

 Score =  544 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/556 (25%), Positives = 267/556 (48%), Gaps = 14/556 (2%)

Query: 407  QSLAVLGSGDIVWDW--DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            QS A+  S + +         + +    P    I G     + G     L     +DR+ 
Sbjct: 477  QSRALDASVNAILITAPSPAGNLIEYVNPAFMRITGYDPAEVIGHDCRVLQR---DDREQ 533

Query: 464  -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++   +   R  +    R    D    W  + I P+ ++ G I  +IG+ ND+T+ 
Sbjct: 534  EGVALIREALAANRE-VSAVVRNYRKDGALFWNQLFIAPVPDAEGIITHHIGVINDVTDL 592

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +  E +   A  D+LT +PNR    DRL   L ++         V+ +D+D +K +ND 
Sbjct: 593  MRYQEQLEYQANYDSLTRLPNRNLLRDRLQHALIVAQRQHKG-VAVVFMDLDGFKNVNDS 651

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG +VGD +L  +  R+    +  + +AR  G+ F +++    +   +  +   +R SI+
Sbjct: 652  LGHSVGDRLLGVVAERLARCTRTSNTVARHGGDEFVVVMTDTVDEQSLIAWMERVRASIS 711

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ L   E+ V  S+G + +      +  ++K A+LAMY AK  G N  + ++     S
Sbjct: 712  EPVWLDGTELYVGCSLGASLFPQDGDDAETLMKKADLAMYRAKDMGRNTFQFYQPEMNAS 771

Query: 703  D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               R+ ++  L  A+ +++  L Y P + +    IVG EAL++W  P+ G +  S F+ +
Sbjct: 772  AGARLNLERRLRRALRDNQFLLHYQPQVDIHTGRIVGTEALVRWRDPEVGLVPPSSFIPV 831

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  ++ ++L    R   +W+D   +PP  + +N++++     ++ + +  ++ +
Sbjct: 832  AEESGLIGPLSEWVLREACRQNKAWQD-LGLPPARVSVNLSARVFQQRDIAKLVMQVLDE 890

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P  ++L  +ES +M N E +  +L  L  +GI L +DDFGT  S LSYL   P D 
Sbjct: 891  TGLEPRYLELELTESAIMRNAEEAVSMLNELSALGIGLAIDDFGTGYSSLSYLKRFPVDR 950

Query: 881  VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S ++    +     I  +II +A +++  +IA+ +     +  L    CD +Q  
Sbjct: 951  LKIDRSFVSDIGISGDDETITSAIIALAHSLKLQVIAEGVETSAQLDFLKERACDEMQGF 1010

Query: 939  HVASPLGFNSILKLLK 954
            + A PL  ++I +L+K
Sbjct: 1011 YFAKPLSTDAISELMK 1026



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 20/180 (11%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +  DI   AL         ++       V              +     +      ++  
Sbjct: 313 ISADISYHALNFMGRAAFFVLAD----DVTEQINAEAEAQRSNQMLEAVIDNIPQRIFWK 368

Query: 422 DIVRDRVTTTPDIATILGLA-SGSMHG------PIRNWLPYIHINDRDNFRTILDSFVGY 474
           D+    +      A   GL+    + G      P R +   ++ +DR+   T +      
Sbjct: 369 DLESRYLGCNMAFARDAGLSYPEQVVGKSDADMPWRAFAELLNAHDREVVGTGVPKM--- 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                + +  +   D      +    P ++ +G ++  +G   DITE+K++   +   + 
Sbjct: 426 ---NFEVDVVI---DGVHRTTVTSKLPFTDGDGRVIGVLGSYTDITERKRADLALRLQSR 479


>gi|163782780|ref|ZP_02177776.1| preprotein translocase ATPase subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881901|gb|EDP75409.1| preprotein translocase ATPase subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1010

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/553 (25%), Positives = 267/553 (48%), Gaps = 17/553 (3%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
             SLAV  + D V   D   +       +  I G +   + G   + +    H   ++ ++
Sbjct: 469  LSLAVEQTSDWVLITDKEGNIQYANRAVEEISGYSVRELIGDTPKIFKSGRH--GKNFYK 526

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             + +  +       +  F  R  D +  ++   I P+ +S G+++ ++    DIT +K+ 
Sbjct: 527  RLWEKVLAGET--FRSVFINRGKDGKLFYLDQTITPIKDSFGNVVGFVATGKDITHEKEL 584

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E +   A+ D +T +PNR +F++RL   +  +   +     V+ ID+D++K +ND  G 
Sbjct: 585  KEKLNYIAYYDPVTELPNRTNFIERLKFSISRTKLLNR-NLAVLFIDVDRFKYVNDTYGY 643

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD+VL  + +RI + ++  D +ARL  + FG++L+   +   I      +  ++  PI
Sbjct: 644  PVGDEVLKVIAQRIKDAVREGDTIARLGSDEFGVVLVDIAHKEDIPKVMDKIFSNMEKPI 703

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR- 704
             +  +E+ +T S+G A +      + +++K AE+A+ HAK    N  + FR         
Sbjct: 704  EVEGKEVVLTLSVGIAVFPEDGTEAEDLVKKAEMALAHAKEDVRNSYQFFREDMNTHITE 763

Query: 705  -VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             V+++  L  A+E +E  + Y P   L   + VG EAL++W+    G +  S+F+ I E 
Sbjct: 764  LVLMERHLFRALERAEFVVHYQPYFDLKSMKAVGFEALLRWNSDDLGFVFPSKFIPILES 823

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  +  ++L+   R   +           + +N++     D +    ++  I +   
Sbjct: 824  TGLIIKVGEWLLKEACRLAET-------TGKSVSVNVSPVQFKDKDFPRKVERAIEECGI 876

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                I L  +ES +M + E ++  L RL+K+G+ + +DDFGT  S L+YL  +P D +K 
Sbjct: 877  EGGYITLEITESTIMDDVEFAKKSLRRLKKLGVKVAIDDFGTGYSSLAYLKLLPVDFLKI 936

Query: 884  NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +          AI+ +II +AKN+    +A+ I  E  ++ L  MGCD  Q  H+A
Sbjct: 937  DVSFVRDIDRDPDDRAIVNAIIQLAKNLGLRTVAEGIENEKHLEILKSMGCDIGQGYHLA 996

Query: 942  SPLGFNSILKLLK 954
             P+     L++L+
Sbjct: 997  RPMPEEEALRVLE 1009



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 404 GERQSLAVLGSGDIVWDW------DIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYI 456
            E +SL +    DI++        +    +V      +  + G +          W+  +
Sbjct: 2   LEGKSLFLEIINDIIYMVSFEDSDNPATAQVQYINSKVKDLTGYSPEEFIKDPSLWMTLV 61

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D +         +  R+  +  E+RV+  +  + W+  R+ P+   +  ++ ++G+A
Sbjct: 62  HPKDTERVMKATLKLIK-RKESITREYRVKTKEGSYIWVEDRLIPVLEKD-RLIGFVGVA 119

Query: 517 NDITEQK 523
            DIT++K
Sbjct: 120 RDITKRK 126


>gi|213967691|ref|ZP_03395838.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213927467|gb|EEB61015.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 829

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 154/581 (26%), Positives = 275/581 (47%), Gaps = 12/581 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++ G   +  +      SQ +       +     + + V   D  +           I 
Sbjct: 238 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 297

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G +     G   R      H  D   + ++         G  Q E   R  + + +   +
Sbjct: 298 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 353

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + N    +  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL + L  
Sbjct: 354 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLH 413

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +L   V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F
Sbjct: 414 SEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEF 472

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L            A  +    + P    E E+ ++ SIG   + +     + ++KNA
Sbjct: 473 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 532

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY +K +G N VES+        S+R+ ++++L  A++ ++L L Y P I L+   +
Sbjct: 533 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQPKISLLTHTL 592

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EALI+W HP +G +    F+ +AEE  MI  I  ++LE+  R + +WR     P   
Sbjct: 593 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAWRK-TCTPFGP 651

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A   L    L E ++ L++     P  ++L  +E+ +M   + +  +L +L+++G
Sbjct: 652 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 711

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S LSYL  +P D +K + S + G  E     AI+R+II + ++++ T+
Sbjct: 712 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 771

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
           IA+ +      + L+  GC+ IQ   ++ PL  +    + L
Sbjct: 772 IAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 812



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 14/156 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA- 441
             V++ + A     Q +    E+ + A   + D +          +        I G + 
Sbjct: 122 LVVVRDITALKQAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 181

Query: 442 SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +     +   W      ++R      L            +  R+R  +       + 
Sbjct: 182 RHCLEHSTFDLGIWADL---SERSRLIEQLKQH----GVVHGFRARLRNVNGSIRVCELS 234

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             P+  S    L  + I+ DITE +   E +   A 
Sbjct: 235 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 268



 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 15/157 (9%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSM 445
           +  ++      + +     R +       D +     I    +          GL+   +
Sbjct: 1   MAGLMIDISDREALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEV 60

Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G     L               L             E   R  + +    ++  +P   
Sbjct: 61  IGKTPTELDLWAVPGIGPKVLQQL-----QTGNIHNLEIPFRRKNGRTFSGLMSAQPF-- 113

Query: 505 SNGDILRYIGIANDITEQKKSL------EGILCNAFQ 535
             G     + +  DIT  K++       E     AF 
Sbjct: 114 DQGSTPAVLVVVRDITALKQAQQQLQLSEEKFAKAFH 150


>gi|28867764|ref|NP_790383.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850999|gb|AAO54078.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 829

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 154/581 (26%), Positives = 276/581 (47%), Gaps = 12/581 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++ G   +  +      SQ +       +     + + V   D  +           I 
Sbjct: 238 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 297

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G +     G   R      H  D   + ++         G  Q E   R  + + +   +
Sbjct: 298 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 353

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + N    +  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL + L  
Sbjct: 354 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLH 413

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +L   V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F
Sbjct: 414 SEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEF 472

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L            A  +    + P    E E+ ++ SIG   + +     + ++KNA
Sbjct: 473 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 532

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY +K +G N VES+        S+R+ ++++L  A++ ++L L Y P I L+ + +
Sbjct: 533 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQPKISLLTQTL 592

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EALI+W HP +G +    F+ +AEE  MI  I  ++LE+  R + +WR     P   
Sbjct: 593 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAWRK-TCTPFGP 651

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A   L    L E ++ L++     P  ++L  +E+ +M   + +  +L +L+++G
Sbjct: 652 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 711

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S LSYL  +P D +K + S + G  E     AI+R+II + ++++ T+
Sbjct: 712 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 771

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
           IA+ +      + L+  GC+ IQ   ++ PL  +    + L
Sbjct: 772 IAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 812



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 14/156 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA- 441
             V++ + A     Q +    E+ + A   + D +          +        I G + 
Sbjct: 122 LVVVRDITALKQAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 181

Query: 442 SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +     +   W      ++R      L            +  R+R  +       + 
Sbjct: 182 RHCLEHSTFDLGIWADL---SERSRLIEQLKQH----GVVHGFRARLRNVNGSIRVCELS 234

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             P+  S    L  + I+ DITE +   E +   A 
Sbjct: 235 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 268



 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 15/157 (9%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSM 445
           +  ++      + +     R +       D +     I    +          GL+   +
Sbjct: 1   MAGLMIDISDREALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEV 60

Query: 446 HGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G     L               L             E   R  + +    ++  +P   
Sbjct: 61  IGKTPTELDLWAVPGIGPKVLQQL-----QTGNIHNLEIPFRRKNGRTFSGLMSAQPF-- 113

Query: 505 SNGDILRYIGIANDITEQKKSL------EGILCNAFQ 535
             G     + +  DIT  K++       E     AF 
Sbjct: 114 DQGSTPAVLVVVRDITALKQAQQQLQLSEEKFAKAFH 150


>gi|312876185|ref|ZP_07736172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797000|gb|EFR13342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor lactoaceticus 6A]
          Length = 1016

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/567 (25%), Positives = 268/567 (47%), Gaps = 11/567 (1%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +  + E+    +    D +W+ D     +     +  +  + +         WL + H 
Sbjct: 448  ALEEEKEKYKFLIENGSDCIWEIDFKEKNIEFYGRLKDLFDIKAVKSKNDFSAWLDFFHP 507

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +DR      L   +      L++E R+R  +  +HWM   ++   N  G   + I +  D
Sbjct: 508  DDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWHWMSAHVQIFYNEEGKPEKIIAVNID 567

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             T +K+  + I   A+ D LT +PNR+ F + L   +  +  ++  +  V++IDID +K 
Sbjct: 568  WTAKKEYEQKIEYIAYYDALTSLPNRKLFEEVLEDFIKKA-EEEKAQGAVILIDIDNFKD 626

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAI 635
            IND+ G   GD+ L ++ +++ E LK        AR+ G+ F ++L       ++ +   
Sbjct: 627  INDLYGHEAGDEYLKAVCQKVLEYLKSLNLNTFFARVGGDEFAVVLHGLAKKEEVIEVCT 686

Query: 636  AMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             +       I +   ER++  +AS+G + +     +  E+ +N ++A+  AK  G N  +
Sbjct: 687  HLLNIFESEIYIEKLERDLFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKNDFQ 746

Query: 694  SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F   + +    ++ I++ L  A+E  +  L Y P+I L D EI  +EAL++W  P+ G 
Sbjct: 747  IFLPFMLTKNLKKIEIEKGLKKAIETDQFELYYQPVINLKDMEIHSVEALLRWISPEKGM 806

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            IS  EF+ +AEE  +I  I   ++E+   D+  W  +     + + IN++++        
Sbjct: 807  ISPLEFIPVAEESGLIVKIGEMVIEKAFSDLKEWEKKGIDY-LHMAINLSARQFKTKFFE 865

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              +Q LI +    P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S L 
Sbjct: 866  NMVQKLIERYSIDPKKISFEITETGAVENFDVSLKILSFLCQMGIKFLIDDFGTGYSSLI 925

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P   VK + S ++    +++  AI+  II MA  I+  ++A+ +  +  ++ L  
Sbjct: 926  YLKRLPIGGVKIDRSFISELEVSKENKAIVEGIILMAHKIDLKVVAEGVETKRQLEILKE 985

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKER 956
            +GCD  Q    + PL    + KLL  R
Sbjct: 986  VGCDLAQGYLFSKPLPKAEVEKLLIAR 1012



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 4/165 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           N  I  + +  L++I+      +            G  +  +   L    +  IV   ++
Sbjct: 258 NRQIVISSLYLLLIILFAASVAIFVMTRINRRLEHGKQAYEKYAQLLAENANAIVLTLNL 317

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYE 482
             + +        + G  S  + G    W+   I  + R+    +       +     +E
Sbjct: 318 NGEIIYFNKFAQELTGYKSEEVVGKK--WVDIFIPPHRREYIENLFKRIAEEKILN-NHE 374

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +   D    W++     + +   +    I    DIT+ K + +
Sbjct: 375 NEIVTKDGDIKWILWNNTLIESPYLNEPMIISTGLDITQIKTTQQ 419


>gi|149375006|ref|ZP_01892779.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149360895|gb|EDM49346.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 804

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 160/586 (27%), Positives = 273/586 (46%), Gaps = 21/586 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL----------AVLGSGDIVWDWDIVRDRVTTTPDIA 435
           + Q  +A     + +  D ERQ            A+  S   V   D            +
Sbjct: 217 LAQVTVAINQMRERLNDDLERQERDAQEIRKFSKAIEQSPSSVLICDRQWRIEYANQKFS 276

Query: 436 TILGLASGSMHGPIRNWLP---YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            + G  +  + G     +      H  +R  +++I       R G  Q E      + + 
Sbjct: 277 QLTGYDNAVICGKHPGMVSEDAQAHRENRQLWQSI--RLQVQRVGVWQGEINSVRKNGER 334

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W  + + P+ NS GD   Y+ +  DI+ +K+  + +L  A  D LTG+PNR   LDRL 
Sbjct: 335 FWEQLIVTPIKNSKGDATGYLILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLK 394

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L  +  + +L   VM +D+D +K IND LG   GD++L+   RRI   L+    +ARL
Sbjct: 395 LALAQARRESSL-VGVMFLDLDNFKHINDTLGHDAGDNLLIEAARRISSCLRGTSTVARL 453

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F +IL         +  A  + K+ A P  L  +E+ VT SIG + + +    S  
Sbjct: 454 GGDEFLVILPGLTGPEATSQVAERILKTFAPPYLLNGQEVFVTTSIGISIFPNDSDNSGT 513

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +L++A+ AMY AKH+G +    F         +R+ ++  +  A+E  E  L Y PI+R 
Sbjct: 514 LLQHADAAMYQAKHKGKSAYAHFAPEMTEVSHERLQMESLMRRALEQKEFELYYQPIVRT 573

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              ++   EAL++W++P  G +    F+ +AEE  +I  I  ++L+      + W+    
Sbjct: 574 ESGQLCSAEALLRWNNPGMGMVMPDRFIPLAEETGLITPIGEWVLQEACLAAMRWKASTG 633

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              I I +N++ +   D    + +   +  +   P +++L  +E +++ N   +  +L +
Sbjct: 634 -TDIGISVNVSPRQFRDPGFVDTVMNALDASGLPPQQLELEITERLILDNTIETADILRQ 692

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L + GI L++DDFGT  S LSYL   PFDT+K + S +       +  +++++II MA +
Sbjct: 693 LDQSGIRLSVDDFGTGYSALSYLKSYPFDTLKIDKSFVQDVMKEREDASLVKAIINMAHS 752

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +   +IA+ +  E     L   GCDY Q    + PL  N   + LK
Sbjct: 753 LGLRVIAEGVEEEAQTHFLQHEGCDYSQGYFYSRPLPENEFQQWLK 798


>gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300074656|gb|ADJ64055.1| EAL domain containing protein [Herbaspirillum seropedicae SmR1]
          Length = 1036

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 141/556 (25%), Positives = 258/556 (46%), Gaps = 18/556 (3%)

Query: 414  SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
            S + +   D     +        I G ++  + G   N L      DR +          
Sbjct: 483  SREGMLITDANSKILRVNKAFTEITGYSAEEIVGKHPNLLRS----DR-HGPAFFQEMRE 537

Query: 474  --YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
               R G+ Q E   R  + + +   + I  + N +  +  Y+   +DI+++K + E I  
Sbjct: 538  SIRRFGKWQGEIWDRRKNGEVYPEWLTISAVKNKDQQVTHYVSTHHDISDRKLAEERIRE 597

Query: 532  NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             AF D LT +PNR   LDRL   + LS         ++ ID+D +K +ND +G   GD +
Sbjct: 598  LAFFDALTRLPNRTLLLDRLKQAIALSLRT-KTCAALLFIDLDHFKTLNDTIGHEKGDTL 656

Query: 592  LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA-----MRKSIAMPIN 646
            L  + +R+   ++  D +AR+ G+ F ++L   N   + A          +  ++     
Sbjct: 657  LKQVAQRLLANVRENDTVARVGGDEFVVVLEGLNELQQEAATQTRAIGEKILTALGSTYQ 716

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704
            L + E   TASIG   +     +  E++K A+LAMY AK  G N +  F  +   +  +R
Sbjct: 717  LDDVEYRTTASIGATVFLGRAASVDELMKQADLAMYKAKETGRNALRFFDPAMQTAVLER 776

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              ++  L  A++ ++L L Y P + +    + G E L++W HP+ G +   +F+ +AEE 
Sbjct: 777  ATLEAGLRKAIDGNQLLLHYQPQV-VEGGRVTGAEVLVRWQHPQRGMVPPGDFIPLAEET 835

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I ++  ++LE   R + +W  Q  M  + I +N+++  L + +  + +   I +T  +
Sbjct: 836  GLILSLGNWVLETACRQLATWAAQPQMADLSIAVNVSAPQLREPDFVQTVLDTIERTGAN 895

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            P R+KL  +ES+++ N E     +  L+  G+  +LDDFGT  S LSYL  +P + +K +
Sbjct: 896  PRRLKLELTESLLVDNVEDIIQKMFALKAYGVEFSLDDFGTGYSSLSYLKRLPLNQLKID 955

Query: 885  GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S +          +I ++I+ +A+++   +IA+ +  +     L   GC   Q      
Sbjct: 956  QSFVRDVLIDPNDASIAKTIVNLAQSLGLGVIAEGVETDAQRSFLADAGCHAYQGYFFCR 1015

Query: 943  PLGFNSILKLLKERFP 958
            P+   +  K  +E  P
Sbjct: 1016 PVTVEAFEKFAQEFDP 1031



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 7/194 (3%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS---QGI 400
           W L        + A   R    +I    +   + + +L    V   V A          +
Sbjct: 288 WTLTLRTN-AAFHAQFGRNAEPLIATTGIAMSLSLALLAWLMVSSRVRAVRLAQKMTAEL 346

Query: 401 FSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +  E+       + +  VW W +          +    G                 H  
Sbjct: 347 RASEEQFRAIADCTVNWEVW-WGLDGRPRWINHAVLDYTGYTVEECLAMDDFIGTIAHPE 405

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D    R  L   +  ++ R   E R    D    W+ +   P+ ++ G    +   + DI
Sbjct: 406 DEPRIRAELARCMDGQK-REDVELRCVRKDGSVFWLALSCAPIHDAQGRFTGFRTSSRDI 464

Query: 520 TEQKKSLEGILCNA 533
           T++K+    +  +A
Sbjct: 465 TDRKQIEAELRISA 478


>gi|126176406|ref|YP_001052555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125999611|gb|ABN63686.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
          Length = 733

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 149/593 (25%), Positives = 281/593 (47%), Gaps = 15/593 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
           P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 129 PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 188

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
              P    I G     + G   + L    H     +F T +   +    G+ + E   + 
Sbjct: 189 LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 244

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            + Q +   + I  + N  G I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F
Sbjct: 245 KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 304

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL   + ++  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 305 NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 363

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +AR+ G+ F +IL    N L I   A  + +++ MP +L +REI ++AS G   +    
Sbjct: 364 FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 423

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           +  S + +N E AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 424 LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNEAMFARMELEQRLRRAVAQNEFALHYQ 483

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+ +    +  +EALI+W  P +G I   +F+ +AEE  +I+ +  ++L +   D+  W
Sbjct: 484 PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 543

Query: 786 RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 544 QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 601

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L  +R +G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 602 HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 661

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +I+ M +++E  ++A+ I  E     L  +GC + Q   ++ PL F+ I  LL
Sbjct: 662 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 714


>gi|217974216|ref|YP_002358967.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217499351|gb|ACK47544.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 921

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G     + G   R +    H  
Sbjct: 368 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 425

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F  + ++ +    G+   E   R  +       I I  + +  GD+  ++ +  DI
Sbjct: 426 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 483

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK++   +   A+ D LT +PNR  F+ +L   +  +    NL+   ++ID+D +K I
Sbjct: 484 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 542

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   +   D+L+R+ G+ F  ++   +NS         +R+
Sbjct: 543 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQ 602

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + S    +  +L+NA+ AMY AK+ G N+   +  S
Sbjct: 603 VFEQPFIVSTGDHLRLTASMGVSLYPSDGADADTLLRNADAAMYRAKNDGRNNYAFYTES 662

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG EAL++W  P+ G IS + 
Sbjct: 663 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVTRKTVGFEALLRWHDPQLGLISPAI 722

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE   R  + W  +       I +N+A + L  +   + ++ 
Sbjct: 723 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 781

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T      ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 782 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 841

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  IIA+ +  +     L +  CD 
Sbjct: 842 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 901

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P     +   L 
Sbjct: 902 AQGYLFSRPQLPEDLDAFLS 921


>gi|304409412|ref|ZP_07391032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|307303770|ref|ZP_07583523.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
 gi|304351930|gb|EFM16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|306912668|gb|EFN43091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
          Length = 920

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/560 (25%), Positives = 267/560 (47%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G     + G   R +    H  
Sbjct: 367 EEQLTLATNVFKNSVEGVVVTDRHGNITDVNGAFFEITGYVREELLGQNPRIFSSGRH-- 424

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F  + ++ +    G+   E   R  +       I I  + +  GD+  ++ +  DI
Sbjct: 425 DKAFFDKLWNALLAN--GKWNGEIWNRRKNGTIFPQNITISTIYDEVGDVRYFVAVFADI 482

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK++   +   A+ D LT +PNR  F+ +L   +  +    NL+   ++ID+D +K I
Sbjct: 483 SAQKENEAQLTHLAYFDPLTHLPNRMKFMMQLKQEVRQAKRL-NLQLATVMIDVDLFKHI 541

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   +   D+L+R+ G+ F  ++   +NS         +R+
Sbjct: 542 NDSFGHSIGDEMLVELAKRLRSQVGDQDVLSRIGGDEFVALISGIDNSEDATVAINQLRQ 601

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + S    +  +L+NA+ AMY AK+ G N+   +  S
Sbjct: 602 VFEQPFIVSTGDHLRLTASMGVSLYPSDGTDADTLLRNADAAMYRAKNDGRNNYAFYTES 661

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG EAL++W  P+ G IS + 
Sbjct: 662 LTQQSFEHLKLQSALYGAIEQNALYLMYQPKLDLVSRKTVGFEALLRWHDPQLGLISPAI 721

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE   R  + W  +       I +N+A + L  +   + ++ 
Sbjct: 722 FIPVAEKIGLIHEIGLWVLETACRQGMRWLSEGKHFG-RIAVNVAGQQLQRSSFVDDVKR 780

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T      ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 781 VLAETGLPAKHLELEVTESVMMQNPDLAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 840

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  IIA+ +  +     L +  CD 
Sbjct: 841 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLDIIAEGVETKEQADFLQQNQCDQ 900

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P     +   L 
Sbjct: 901 AQGYLFSRPQLPEDLDAFLS 920


>gi|89899824|ref|YP_522295.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89344561|gb|ABD68764.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1051

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 148/628 (23%), Positives = 269/628 (42%), Gaps = 22/628 (3%)

Query: 340  LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
             +   +       G+ + +                L       G  +     A     + 
Sbjct: 433  FMQGVMATGQSLEGIELRLRHLDGGWRWFHTNAVPLKNET---GKVIGLQGSAMDVTVRK 489

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +  +  R +     S   +   +  +  +        I G       G     L      
Sbjct: 490  LAEEDTRIAATAFESQQGMIITNAEKVILRVNKAFTEITGYTMEEALGQTPRLLKS---- 545

Query: 460  DR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            DR    F   + + V  R G  Q E   +    + +   + I  + ++ G +  Y+G+ +
Sbjct: 546  DRHDAGFYGAMWASVA-RSGSWQGEIWRQRKSGEQYPEWLSINAVKDAAGLVTHYVGVFS 604

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DITE+K S E I   AF D LTG+PNR+  +DRL   L  +A   + +  ++++D+D +K
Sbjct: 605  DITERKISEEKIDRLAFYDALTGLPNRRLMIDRLQQALAATARH-HCKGALLLVDLDNFK 663

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IAD 632
             +ND LG   GD +L    RR+   L+  D +AR+ G+ F +++   + S +        
Sbjct: 664  TLNDTLGHDQGDLLLQHAARRLSACLRESDTVARVGGDEFIVLMEDMSQSDQEVATQAKA 723

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNH 691
                +  ++  P          TASIG   +    + ++ E +K  ELAMY AK  G N 
Sbjct: 724  LGEKIIDTLGQPYQFGSSSHYSTASIGITLFDGAQQESTEEPMKQVELAMYQAKAAGRNT 783

Query: 692  VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            +  F             ++  L  A+E ++  L Y   + +   +I G+EAL++W  P+ 
Sbjct: 784  LRFFDPQMQAVVTARAVLENGLREALEQNQFLLHYQAQM-VGGRQITGVEALVRWRDPRR 842

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +S  EF+ +AEE  +I ++  ++LE     +  W  +A M  + + +N+++      +
Sbjct: 843  GMVSPVEFIPLAEETGLILSLGQWVLETACTQLARWATRAEMEHLTVAVNVSANQFQQGD 902

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
              E + A++ +T  +P+R+KL  +ES+++ N E     +  L+  G+  +LDDFGT  S 
Sbjct: 903  FVEQVLAVLERTGANPNRLKLELTESMLISNVEGVIAKMSALKGRGVCFSLDDFGTGYSS 962

Query: 870  LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LSYL  +P D +K +   +          AI + +I +A+++  ++IA+ +  E     L
Sbjct: 963  LSYLKRLPLDQLKIDQGFVRDILIDSNDAAIAKMVIALAESLGLSVIAEGVETEAQRDFL 1022

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +GC   Q      PL        L+ 
Sbjct: 1023 AGLGCHAYQGYLFCKPLPLEEFEAFLQR 1050



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 15/251 (5%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +  +G   IA+L     + P+       +     +      + +  ++           
Sbjct: 265 RVPVAGWVAIALLPTAEAFAPINVMHQRMLLTTLFLTLLAGALTWWVLRRE--------- 315

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                +       ++  + + D +   L          +     + +       + +   
Sbjct: 316 ----LLPLFKAARSLATQAETDQLPQPLPLTRQDETDQLISGFNRLLQTLTRREESLKES 371

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E+    +  S D+++           +     +LG     + G       ++H  D   
Sbjct: 372 EEQHRRLIDNSHDVIYTLTKAGVFTFMSSAWTALLGHPLNQVVGQ--TVFTFVHPEDVAV 429

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +   +     E R+R  D  + W      P+ N  G ++   G A D+T +K
Sbjct: 430 CTAFMQGVMATGQSLEGIELRLRHLDGGWRWFHTNAVPLKNETGKVIGLQGSAMDVTVRK 489

Query: 524 KSLEGILCNAF 534
            + E     A 
Sbjct: 490 LAEEDTRIAAT 500


>gi|330878420|gb|EGH12569.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 825

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 151/581 (25%), Positives = 272/581 (46%), Gaps = 12/581 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++ G   +  +      SQ +       +     + + V   D  +           I 
Sbjct: 234 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 293

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G +     G   R      H  D   + ++         G  Q E   R  + + +   +
Sbjct: 294 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 349

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + N    +  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL + L  
Sbjct: 350 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYRAHHDPLTGLPNRTLFESRLQSALLH 409

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +L   V+ +D+D++K IND LG  +GD +L  +  R+ E L+  D +ARL G+ F
Sbjct: 410 SEESGSL-GAVLFLDLDRFKHINDSLGHPIGDLLLKGIAHRLKETLRDIDTVARLGGDEF 468

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L            A  +    + P    E E+ ++ SIG   + +     + ++KNA
Sbjct: 469 IVLLPGLLQPGDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNA 528

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY +K +G N VES+         +R+ ++++L  A++  +L L Y P I ++   +
Sbjct: 529 DAAMYRSKAQGRNRVESYTRDLTEQARERIALEQELRRALDRKQLSLAYQPKISILTHTL 588

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EALI+W HP +G +    F+ +AEE  MI  I  ++LE+  R + +WR     P   
Sbjct: 589 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGEWVLEQACRQMGAWRK-TCTPFGP 647

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A   L    L E ++ L++     P  ++L  +E+ +M   + +  +L +L+++G
Sbjct: 648 MSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDALAVLHKLKQLG 707

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S LSYL  +P D +K + S + G  E     AI+R+II + ++++ T+
Sbjct: 708 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 767

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
           IA+ +      + L   GC+ IQ   ++ PL  +    + L
Sbjct: 768 IAEGVETREQQQFLCEEGCEQIQGYIISLPLQPDEFSERFL 808



 Score = 42.2 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 14/156 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   + D +          +        I G + 
Sbjct: 118 LVIVRDITRLKLAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYSE 177

Query: 443 -GSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +     +   W      ++R      L+           +  R+   +       + 
Sbjct: 178 LHCLEHSTFDLGIWADL---SERSRLIEQLEQH----GVVHGFRARLCNVNGSIRVCELS 230

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             P+  S    L  + I+ DITE +   E +   A 
Sbjct: 231 SHPLLISGDACL--LTISRDITESQLMQEKLHLAAT 264



 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + +     R +       D +     I    +          GL+   + G     L  
Sbjct: 7   REALRLSDGRFASVFTQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEVIGKTPTELDL 66

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + Q    ++  +P     G     + 
Sbjct: 67  WAVPGIGPKVLKQL-----QTGNIHNLEIPFRRKNGQTFSGLMSAQPF--EQGSTPAVLV 119

Query: 515 IANDITEQKKSL------EGILCNAFQ 535
           I  DIT  K +       E     AF 
Sbjct: 120 IVRDITRLKLAQQQLQLSEEKFAKAFH 146


>gi|325981725|ref|YP_004294127.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Nitrosomonas sp. AL212]
 gi|325531244|gb|ADZ25965.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Nitrosomonas sp. AL212]
          Length = 1136

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 159/613 (25%), Positives = 285/613 (46%), Gaps = 22/613 (3%)

Query: 349  IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
               +    AI  R   +  Q  L  GL+    L+    +Q V A     Q          
Sbjct: 521  AGKVLGTFAIYHRTPREPSQADL--GLINEFALLTALAVQKVYAAESLKQAAA------- 571

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTI 467
                 + + V   D+    V      A I G +   + G   R      H  D+  ++ +
Sbjct: 572  -VFESTREGVVITDLQPRIVAINRAYAEITGYSEEQVLGKNPRIIKSGRH--DKLFYQAM 628

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              S    + G  + E   R      +   + I  + N   +   Y+G+  DIT+ K+S  
Sbjct: 629  WASL--TKAGYWRGEVWNRRRSGDIYPQWLTISTVFNDRNEPCNYVGVFTDITQIKQSEA 686

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +   A  D LTG+PNR     RL   ++ +    N +   + +D+D++K +ND LG  +
Sbjct: 687  RLAHLAHYDALTGLPNRLLVQSRLHHAIERTLRHGN-QIAALYLDLDRFKNVNDSLGHPI 745

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD++LV L  R+ + L+  D LARL G+ F ++L    +S + A  A  +   +A P +L
Sbjct: 746  GDELLVMLALRLKKRLREEDTLARLGGDEFLVVLEDIKDSNEPAMVAQTLIDLLATPFSL 805

Query: 648  -LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
                EI +  SIG + + +   + +E++++A++AMY AK  G N         S   ++R
Sbjct: 806  PSGHEIFINTSIGISLFPTDANSVTELIQHADMAMYLAKQEGRNTYRYHTDALSIAANER 865

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            ++++  L  A+   E  L Y P+I     +++G+EAL++W  P    +S  +F+ IAEE 
Sbjct: 866  LVLETQLRQALSAGEFVLHYQPLIDARKGQVMGVEALVRWQPPDKAMVSPGKFIPIAEET 925

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  +  ++L        +W D  + PP+ + +N++ +      L E ++ ++ +T   
Sbjct: 926  GLIVPLGEWVLRTACAQGRAWMDA-DFPPLVMAVNLSVRQFQSENLVELIRQVLEETKLP 984

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             + ++L  +ES+ M + E+S  +L  L+ +G+ L++DDFGT  S L+YL   P D +K +
Sbjct: 985  AACLELELTESMFMEHAEQSIEILKTLKSLGVRLSIDDFGTGYSSLTYLKRFPIDKLKID 1044

Query: 885  GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S + G         I  +II MA+N++  ++A+ +  E  +  L + GCDY Q      
Sbjct: 1045 QSFVHGLAYDPNDREIAATIIAMARNLKLDVLAEGVESEQQLDILNQHGCDYYQGYLFHR 1104

Query: 943  PLGFNSILKLLKE 955
            P+    +    +E
Sbjct: 1105 PVPAQELEVWFRE 1117



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 93/268 (34%), Gaps = 15/268 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
           H   +   +     + +     L  +    PM  A+   + L    +  T  +    +  
Sbjct: 152 HLALYAPHIHLTAVTDVHHALALLPI---DPMEQATQFDVLLLENCISGTDDLALIKLLR 208

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
            ER  L +P  ++                 +D +         L         +QH    
Sbjct: 209 NER-RLDLPIVLVTDQGSEIAVARALHMGVDDYLTKHAGY---LYETTAILEKVQHQAEL 264

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTTPDIATILGLASGSMHGPIR 450
                 +     R S  +  S  I+++  +V      V  + +I  +LG     +     
Sbjct: 265 ARERISLKKTSLRLSDLLAASPTILYNLRVVGTTFQLVWVSENIERLLGYTQEEVMAE-G 323

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W  ++H +DR+   T     +    G+L Y++R+   + Q  W+   +R + + NG  L
Sbjct: 324 WWNLHVHPDDREAALTHQSELLA--VGQLTYDYRLLHRNGQSVWIHDELRLVRSINGKPL 381

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNL 538
             +G   D++E K++   ++  A Q  L
Sbjct: 382 EVVGAWLDVSEHKRT--ELIRQAHQSAL 407


>gi|317152447|ref|YP_004120495.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942698|gb|ADU61749.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 857

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 143/585 (24%), Positives = 266/585 (45%), Gaps = 11/585 (1%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++     +   +         +    ++       + + ++        ++  P +A I
Sbjct: 270 ELLRANTQLKIEIAERKVIGDALRKAEKKYRTIFENALEGIYQTSPSGRFLSANPSLARI 329

Query: 438 LGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           LG  ++  M G + +    +++      R      +        +  +VR  D +  W+ 
Sbjct: 330 LGFKSADEMMGSVYDIGTQMYLE--PGRRKEFLRLIEETGEVKNFVSKVRRRDGRIIWIS 387

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              R +++++G ++ Y G   DIT +KK+ + +   AF D LTG+PNR  FLD L   ++
Sbjct: 388 ENARRITDADGSVMCYEGSVEDITLRKKAEDQLKRQAFHDPLTGLPNRALFLDHLRMAME 447

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +L   V+ +D+D++K IND LG   GD++L S+ R + +  +  D +AR  G+ 
Sbjct: 448 RGRRRRHL-FAVIYMDLDRFKVINDSLGHETGDELLRSVARVLEKCGRSVDTIARFGGDE 506

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I++   + S      A  +   +  P  +   E+  +AS+G    T        +L++
Sbjct: 507 FAILIEEISASRDAIAIARRILDGVRQPFTINGNEVFTSASLGIVLKTDGYDRPEALLRD 566

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G +  + F   +       + ++ DL  AV+  E  + Y PI+ L    
Sbjct: 567 ADTAMYRAKEHGKSRFKVFNQKMHDQALRLMALETDLRRAVDLREFEVAYQPIVCLDTRR 626

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-- 792
           + G EAL++W HP+ G I   +F+ +AE+  +I AI+ F+L      +  W+        
Sbjct: 627 VCGFEALVRWRHPEHGVILPGDFISLAEDTGLIYAIDNFVLVAACAQVKLWQTTFGHLMG 686

Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + INI+ K      L   +   +  +  +P  + +  +ES +M NP  +  +L +L
Sbjct: 687 ELLTLNINISGKHFGQPMLLSQVTRALDDSGLNPQALNIEITESALMDNPAVAEEVLKQL 746

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909
           + +G  + +DDFGT  S LSYL   P D VK + S + G        AI+R++  + +++
Sbjct: 747 KSLGAKVCIDDFGTGYSSLSYLQRFPIDVVKVDRSFIDGVEGNLDSQAIVRTVFSLGESL 806

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+A+ +     +  L   GC Y+Q      PL    + +LL 
Sbjct: 807 GLKIVAEGVETPAQLAFLENEGCRYVQGFLFYRPLSATEVDELLA 851


>gi|253995796|ref|YP_003047860.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982475|gb|ACT47333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 976

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/557 (25%), Positives = 251/557 (45%), Gaps = 16/557 (2%)

Query: 404 GERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            ++  +A     S + +   +   + +        I G  +    G   N L        
Sbjct: 408 EQQLRIAATAFESQEGIVVTNENFNILRVNQAFIDITGYEAEEATGKKPNILKS-GRQSG 466

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + +R I  S      G    E   R  + + +   + I  + +++G    Y+G+  DI+ 
Sbjct: 467 EFYRNIYTSLRE--TGSWSGEIINRRKNGEIYPEHLTITAVKDADGQTTNYVGMFTDISV 524

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K + E I   AF D LT +PNR+ F DRLT  L  S    N    ++ +D+D +K +ND
Sbjct: 525 AKAASERIENLAFFDPLTNLPNRRLFSDRLTQALVNSTRSGNY-GALVFLDLDHFKSLND 583

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-----SENNSLKIADFAIA 636
            LG   GD +L  +  R+   ++  D +ARL G+ F +++          + +I      
Sbjct: 584 TLGHDYGDMLLKQVALRLSNCVREGDSVARLGGDEFVLLVENLSANDVEAAHQIEAIGDK 643

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  S+  P  L   E   T SIG + +   + +S ++LK+A++AMY AK  G N +  F 
Sbjct: 644 ILMSLNQPYQLQSHEYLSTPSIGISLFNGHQESSEDLLKHADIAMYQAKKAGRNTLRFFD 703

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +  +   ++ +L  A+E  +  L Y   +     +  G EALI+W HP+ G IS 
Sbjct: 704 PLMQETINMRVDLERELKKAIEQKQFELYYQVQMN-SAGQPSGAEALIRWRHPERGIISP 762

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++L +    + +W+         + IN+++K  L  +    +
Sbjct: 763 IQFIPVAEETGLITQIGEWVLNQACLQLQAWQLDQASKDFSLAINVSAKQFLQPDFANQV 822

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  I       +++KL  +ES+++ N E     +  L +IGI  +LDDFGT  S L YL 
Sbjct: 823 KNSIRSFHIDNTKLKLELTESMLIDNIEYVIHTMNTLGEIGIQFSLDDFGTGYSSLQYLK 882

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +           I+ +II MA ++   +IA+ +  +  ++ L   GC
Sbjct: 883 MLPLSQLKIDQSFVRDLATDNSNKTIVLTIITMAHSLGLNVIAEGVETDEQLQLLNAHGC 942

Query: 933 DYIQDSHVASPLGFNSI 949
              Q  + + PL  N  
Sbjct: 943 GNYQGYYFSEPLSINEF 959



 Score =  147 bits (371), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 1/154 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   V +   A     + + +   R   A+ G+GD VWDW+I  D    +     +LG  
Sbjct: 263 LEEEVARRTQALKENIEELKNSEFRWKFAIEGAGDGVWDWNIATDEAQYSKRWKEMLGYD 322

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +    + W   +H +D    +  +  ++  +      E+R++  DN++ W++ R   
Sbjct: 323 ENELLPTNQEWADRVHHDDVAYVKQTMQDYLEGKTALYVVEYRLKCKDNRYKWILGRGMI 382

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  G+ LR IG   DITE+KK  + +   A 
Sbjct: 383 VSRDDQGNPLRMIGTHTDITERKKIEQQLRIAAT 416


>gi|271501902|ref|YP_003334928.1| PAS/PAC sensor-containing diguanylate cyclase [Dickeya dadantii
           Ech586]
 gi|270345457|gb|ACZ78222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dickeya dadantii Ech586]
          Length = 689

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 144/563 (25%), Positives = 259/563 (46%), Gaps = 11/563 (1%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E+  +A      + + +   D  R+ ++  P    + G +   + G   N    
Sbjct: 122 ERQKAREQMKIAATVYESTQEAIIVIDTNRNIISINPAFTRLTGYSEADIVGKPSNIFQS 181

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +D   +  I  +      G    E   R  D   +   + I  + ++ G  + Y+G+
Sbjct: 182 -DRHDIAFYNAIWRTV--NEDGLWVGEMWDRKKDGSDYLRELTINMVKDAAGTPINYVGV 238

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +DIT++KK  E I   A  D +T +PNR  F D+L   ++ +         +M+ID+D 
Sbjct: 239 FSDITQRKKQEELIWRQANYDAVTALPNRHRFQDKLERAVERAKQTGR-PMALMLIDLDH 297

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG   GD +L +++ RI + ++  D +AR+ G+ F IIL     +      A 
Sbjct: 298 FKSVNDSLGHRAGDALLFAVSTRITDCIQNADTIARIGGDEFAIILSDLLRTDDCGRLAN 357

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +A P N+    + V+ASIG A + +   T  E+ K+A+ AMY AK  G N    F
Sbjct: 358 TLLQRLAKPFNIDGENMLVSASIGIAFYPNDSDTLEELFKHADQAMYSAKSAGRNGFHYF 417

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R+ +  DL  A+E+++  + Y PII L    I   EAL++W HP+ G +S
Sbjct: 418 TPALHQAARARLRLTNDLRQALESAQFEVYYQPIIELATNRITKAEALVRWHHPERGLVS 477

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE- 812
            +EF+ +AE+  +I  +  ++ ++    +  WR+    P   I IN +   L   +  E 
Sbjct: 478 PAEFIPLAEDTGLIVPLGDWVAQQAIIQLAQWRN-TLDPHFQIAINQSPIQLRSKDFTEM 536

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                +++     + + +  +E +++    R    L  LR  GI + +DDFGT  S L+Y
Sbjct: 537 TWVQELARYGLDGNAVIIEITEGLLLNAELRVNNNLHLLRDAGIQIAIDDFGTGYSSLAY 596

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           L     D +K + S +       + +  +II MA ++   ++A+ +  +     LTR+GC
Sbjct: 597 LRKFNIDCLKIDRSFIEDLDGIGLELCVAIIAMAHSLGLNVVAEGVETQHQCDILTRLGC 656

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           DY Q    + P+    +  +L+ 
Sbjct: 657 DYAQGFLFSRPVPAPELTTMLQA 679



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 6/137 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             ++        +      +   +     VT  P  + I G     M          +  
Sbjct: 4   SAWNSESLFQGILDRCPVGIAVINYDGKYVTVNPAYSAIYGYTQEEMVNHP---FTMVFP 60

Query: 459 ND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              R +      SF+    G+L  E+ V   D     +     P +       R + +  
Sbjct: 61  ESTRPSVLARHQSFLDE-GGKLGGEWTVVRHDGAVLTVWSESVPFAQHGQKADRLVYVL- 118

Query: 518 DITEQKKSLEGILCNAF 534
           DITE++K+ E +   A 
Sbjct: 119 DITERQKAREQMKIAAT 135


>gi|307825343|ref|ZP_07655562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733518|gb|EFO04376.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 827

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 175/834 (20%), Positives = 329/834 (39%), Gaps = 66/834 (7%)

Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238
           + ++  +           G+A   A+ L I       S    +    W+    +      
Sbjct: 2   DNFRLLIEQHMDVVFFTYGLAF-FALGLAILVQPKEESRYEISQLAGWLASFGLVHGTLE 60

Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY------------LHWNRWHAKVGYIT 286
              L  +  G+  +    + + L  S  +FLF +                    ++    
Sbjct: 61  WLSLWKIIHGDSAVLSLLNIVFLLVS-YVFLFEFGRRLTRSILDKIPSIPNLVKRMLGAP 119

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE----------- 335
             G+  +A LF +      + A           +      I   +   +           
Sbjct: 120 IYGVVALAFLFELLTVPDRMLAMTIATRYFLGCIGSFLTGIGFLLSINKKSSMYIEKSVF 179

Query: 336 --RAVLLIPAWILIFIWFIGL------WMAITKRLDNDIIQP-------------ALVGG 374
                  + A    F + +           ++  + ND                 + V  
Sbjct: 180 SWSTKYFVLATAAFFFYGVLSCFVAYPANIVSGSVFNDQWFLEKFHFPVQMFRAASAVLA 239

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTP 432
            + I  ++    ++         +       +  ++       + +   D     V    
Sbjct: 240 AIAIGNILRLFHMEVREKLLSSLKSAKEAEAKLRISAHAFDVQEGILITDTNNVIVRVNR 299

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADN 490
               I G  +  +       L       R N  F   +   +    G  + E   +  + 
Sbjct: 300 AFTHITGYTTEDVMDKNPRILSS----GRQNTSFYAAMWESI-NTNGAWKGEVWNQKKNG 354

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +++   + +  + +++ ++  Y+GI  DIT  + + + I   AF D LT +PNR    DR
Sbjct: 355 EYYLEDLTVSAVKDTHANVTHYVGILTDITMNRAAADKIEHQAFYDTLTDLPNRLMLRDR 414

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           LT  L LS  +++    ++ ID+D +K +ND LG  +GD +L  +  R+   ++  D +A
Sbjct: 415 LTPALALSQRNNH-NGALLFIDLDNFKTLNDTLGHDIGDLLLQQVAERLVACVREGDTVA 473

Query: 611 RLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
           RL G+ F I+L   +        +I      +    +    L       T SIG   +  
Sbjct: 474 RLGGDEFVIMLEDLSEHANEAIVQIEVIGNKVLGVFSQSFKLTTHNYHCTPSIGITLFKG 533

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLV 723
             +T  E+LK A++AMY AK  G N +  F      +  +RV +++DL LA+  ++  L 
Sbjct: 534 QNLTIDELLKQADIAMYQAKASGRNAMCFFDPQMQTNITNRVALEKDLKLALAENQFMLY 593

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P + L  ++I+G EALI+W HP+ G +   +F+ +AEE  +I  I  ++LE     I 
Sbjct: 594 YQPQV-LHSQKIIGAEALIRWHHPQRGLVPPVDFIPLAEETGLILPIGQWVLETACAQIK 652

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           SW D  +   + I +N++++     +  E +  ++S    +P+ +KL  +ES+V+G+   
Sbjct: 653 SWEDNEHTRHLQIAVNVSARQFHQTDFVEQVSHILSHNDINPANLKLELTESLVLGDINN 712

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           + L + +LR+IGI  ++DDFGT  S LS L  +P + +K + S +           I+++
Sbjct: 713 TILKMRKLREIGIRFSMDDFGTGYSSLSSLKKLPINQLKIDQSFIRDITSDHDDAIIVQT 772

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           II MA ++   +IA+ +  E     L  +GC  IQ      P+       LLK+
Sbjct: 773 IIAMATSLGMEVIAEGVETEEQRAFLELLGCPAIQGYLFGRPMPIEQFEALLKK 826


>gi|311029427|ref|ZP_07707517.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus sp. m3-13]
          Length = 585

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 155/573 (27%), Positives = 272/573 (47%), Gaps = 10/573 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  ++ + +  ++       +GDI +  D++   ++  P    I G     M    
Sbjct: 16  ARDIVKLNRMMKTSDQQYKSLFEHNGDIAFSVDLLGRIISVNPKFKEIFGFTEKKMLRKS 75

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L +I   D +         +       + E  +   D +    +I+  P+   +G  
Sbjct: 76  A--LNFIKAKDIERVTDHFFKALNGMEQTYEIE--LIQKDGEESTYLIKHIPIV-IDGVR 130

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
               GI  DIT QKK+ E +   A+ D  T +PNRQ+F + L   L+ S      +  V+
Sbjct: 131 TGVFGIGRDITAQKKAEEKVAYLAYYDPATALPNRQNFHESLKVKLEESKKS-KEKLAVL 189

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID D++K IND LG  VGD++L     RI  LL     LAR  G++F +      +  +
Sbjct: 190 FIDFDRFKLINDSLGHLVGDELLKWEIERISALLPANCYLARFGGDKFSLSYTGFESIDE 249

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A A+  +I  PI  LE+E  VTASIG + + +  IT+  +LKNA+ AM  AK  GG
Sbjct: 250 VITMAKAILTTIKQPIRYLEKEFYVTASIGVSLYPNDGITAESLLKNADAAMNQAKKLGG 309

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N ++ +          R+ ++  L  A+E +E +L Y P I +  + ++G EALI+W+HP
Sbjct: 310 NRIKFYSDEMNSQALYRIELESYLRKALEKNEFFLCYQPFIDIDSDTVIGAEALIRWNHP 369

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G +  ++F+ +AEE  +I  I  ++LE       +W+       + I +N++++    
Sbjct: 370 KLGLVPPADFIPLAEETGLIIEIGGWVLETACVHTKNWQQVEGYQELNISVNVSAQQFQQ 429

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                 ++  ++ +  S   + L  +ES ++ N   S  ++  L+ +G+ +++DDFGT  
Sbjct: 430 PSFVSEVKHALTTSGLSACHLHLELTESAMLKNASYSIEVMKELQGLGVKISVDDFGTGY 489

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P + +K + S +       K +AI+ +II M K +   +IA+ I  E  + 
Sbjct: 490 SSLSYLRDLPINNLKIDRSFIKNLRAESKDLAIVHAIITMGKGLNLNVIAEGIETEEQLS 549

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            L ++ CD  Q  +++ P       K + +  P
Sbjct: 550 ILRQLTCDVAQGYYLSKPKEQTEFEKFMNDSQP 582


>gi|119471269|ref|ZP_01613772.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales
           bacterium TW-7]
 gi|119445735|gb|EAW27018.1| PAS sensor diguanylate cyclase/phophodiesterase [Alteromonadales
           bacterium TW-7]
          Length = 739

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 133/625 (21%), Positives = 271/625 (43%), Gaps = 8/625 (1%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              R   ++ + + +      + + I   +     +   +G L  I+  +  ++ Q    
Sbjct: 117 KDGRKRTVLGSAVPLKNGDASIILNIFYDITELEYENGQIGELSNIITELTLSLEQQKND 176

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                Q    + ER SLA+ G+ D +WDWDI  +++  +P   ++LG     +      W
Sbjct: 177 LILEKQKASVNTERLSLAMKGANDGLWDWDIANEKMYYSPRWKSMLGYKEDELTNSFATW 236

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +H +D       + SF+  +    + EFR+R  +  +  ++ R   + +  G+I R 
Sbjct: 237 ERLVHPDDLAPAVAKIHSFMESKTKHYEAEFRMRHKNGSYVNILSRAFVVESEEGEITRL 296

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +G   DIT +KKS E +   +  D+LTG+ NR+ F  R+  +L ++A    +   +  +D
Sbjct: 297 VGTHVDITARKKSEEKLSYQSSHDSLTGLANRREFKRRVELLLSVAAE-KRVDHALCYMD 355

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K +ND  G   GD++L  L   + ++++  D++ARL G+ F +++ + +       
Sbjct: 356 LDQFKVVNDTCGHLAGDELLRQLGSLLQKVVRKTDVVARLGGDEFAVLMENCSFDNAHRV 415

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            ++  ++          R   +  S+G    T   +  +E+LK A++A Y AK +G N +
Sbjct: 416 TSLIQKEIEDYRFVWEGRSFRIGVSMGLIQITDKYVDFTEVLKLADVACYIAKEKGRNRI 475

Query: 693 ESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                           +     +  A++ +   +    I  L  ++    E L++    +
Sbjct: 476 HVHYDDDEELAVHQGEMQWVNRVQDAIDENRFKIYAQLIEPLACDKNKHYELLLRMVDDQ 535

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I    F+  AE   +I  ++ +M+E   + I++  +       F+ IN++ + L + 
Sbjct: 536 GGIIPPGAFLPPAERYQLIVKVDSWMIENAFKMILNNPNFLKGVN-FLSINLSGQSLTNE 594

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +   ++       +I    +E+  + N E +   + +L+ +G    LDDFG+  S
Sbjct: 595 DFLIFVTEQLTLLGEHSEKICFEITETAAISNLELASKFISQLKVLGCCFALDDFGSGLS 654

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
              YL  +  D +K +G  +          A+++SI  +   +    IA+ +      + 
Sbjct: 655 SFGYLKNLKVDYLKIDGIFVKDIEVDPIDHAMVKSINEIGHVMGMKTIAEFVETSRIKQT 714

Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951
           L  MG DY Q   V  P     +LK
Sbjct: 715 LLEMGVDYAQGYAVHKPQPIEELLK 739


>gi|167031260|ref|YP_001666491.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166857748|gb|ABY96155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 631

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 146/623 (23%), Positives = 279/623 (44%), Gaps = 15/623 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+ ++ + + + +  + L       L   + +   +   VL   ++ +     +L     
Sbjct: 13  ALYVVLSILWLALAEVMLHGMTDDPLALTVGRQINIVLWVLFSAVLIYVSRVRLLNFIGA 72

Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451
              +   D ER  +A      + + V   D     V        I G     + G     
Sbjct: 73  GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVMGQRPSK 132

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    H      ++ I  +      G    E   R    + +     I  + + +G++  
Sbjct: 133 FKSGRH--GLAFYQQIFATLAEQ--GEWSGEIWNRRKSGEIYPQWQTICAIRDDDGELSH 188

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ + +DI+  K + + +   A  D LTG+PNR  F DR+   L  +  +      ++++
Sbjct: 189 YVAVFSDISAIKHTEQELAYLAHHDPLTGLPNRLLFTDRVEQALAAAQANKRG-CALLLL 247

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D ++ IND LG  +GD +L  +  R+GE+L     LARL G+ F ++  +     +  
Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKRVGERLGEVLGSGVTLARLGGDEFAVLAENCQQVGQAG 307

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + + +  P    E  + ++AS+G + + S  + + ++L+NA+ A+Y AK  G   
Sbjct: 308 KLAQCIIERMREPFLCEENRLFISASVGISLFPSDALGAEQLLRNADAALYKAKSNGRAC 367

Query: 692 VESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +        +  ++   +L  A+E  EL + + P+  L     VG+E L++W HP+ 
Sbjct: 368 YALYTEELTAHAQHRVETAGELRRALEQDELRVYFQPVHDLATGRQVGVETLVRWQHPQR 427

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ IAE   +I  I+ ++L +  R ++ W+ +      F+ +NI+S+    +E
Sbjct: 428 GLVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAEGRQLA-FVAVNISSRLFGQHE 486

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   + A++ +T   P+ ++L  +ES VM +PE +   L RLR++G++L +DDFGT  S 
Sbjct: 487 LYRQVAAVLHETGLPPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 546

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +P   +K +   + G    E  IAI+R II +A+++   + A+ I        L
Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPLDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFL 606

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
            +  C   Q      P+    + 
Sbjct: 607 LQEQCQLGQGYWFGRPVPAGDLR 629


>gi|119946743|ref|YP_944423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119865347|gb|ABM04824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 777

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 145/559 (25%), Positives = 263/559 (47%), Gaps = 14/559 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R +  V  + + ++  D     +        I G +   + G            D+  ++
Sbjct: 223 RVAATVFETQEGMFVTDANLCILRVNKAFTNISGYSGEEVIGQSPKLFNS-GRQDKAFYK 281

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + +S         + E   R+     +   + I  + +  G +  Y+    DIT  K +
Sbjct: 282 EMWNSI--NTTDAWRGEVSNRSKSGDIYAKNLTITAVRDGKGVVSNYVATFRDITTSKAA 339

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A+ D LT +PNR+  LD L  +L +SA  +     ++ +D+D +K +ND LG 
Sbjct: 340 SEKINNLAYFDPLTQLPNRRMLLDSLRHVLTISARSNQ-HCALLFLDLDNFKTLNDTLGH 398

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKS 640
            VGD +L  +  R+ + ++  DI+ARL G+ F ++L +        + K    A  +   
Sbjct: 399 DVGDLLLQQVATRLTDCVREGDIVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFE 458

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A    L       T SIG   ++ ++    E+LK A++AMY +K  G N    F  +  
Sbjct: 459 LAQYYQLNMHRYHSTTSIGVTIFSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQ 518

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            S      ++ DL  A+E+++  L Y   +     + +G EALI+W HP+ G +S   F+
Sbjct: 519 ESIIARADMERDLRKAIEDNQFQLHYQAQVS-SSGQTLGAEALIRWQHPERGQVSPFNFI 577

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++L+     + +W+       + + +NI++K L   +  E ++A +
Sbjct: 578 PLAEETGLILPIGQWVLDSACAQLKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATL 637

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P+R+KL  +ES+++ N       +  L KIGIS +LDDFGT  S L YL  +P 
Sbjct: 638 KRHDINPARLKLELTESMLVENISDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPL 697

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +          AI+R+II M+ +++ ++IA+ +    + + L   GC + Q
Sbjct: 698 NQIKIDQSFVRDLITDASDRAIVRTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQ 757

Query: 937 DSHVASPLGFNSILKLLKE 955
               + P+  N    LLK+
Sbjct: 758 GYLFSKPVPINEFEVLLKK 776



 Score = 41.5 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 16/175 (9%)

Query: 387 IQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           I+  +      Q   ++    R +     +    + +++           A++L +   +
Sbjct: 51  IELEMQNEELKQARIAEKLHYRYTELFEFAPIGYFSFNLKGVINQVNLRGASLLDIERAN 110

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G    +   +   DR+ F   L        G   +E  +        W+ I       
Sbjct: 111 LVGK--QFSNCLTAQDRNKFNRCLAKAFAGD-GIQSFEV-LAQVGKHKCWLNIEANLGIT 166

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN-----AFQDNLTGIPNRQSFLDRLTTI 554
                   +    DIT++K++ E +L          D L  I N++ F       
Sbjct: 167 E----TDCLAAVIDITDRKRADEELLFQNDEKGKRTDELV-IANKELFFQNAEKE 216


>gi|77458114|ref|YP_347619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas fluorescens Pf0-1]
 gi|77382117|gb|ABA73630.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
            fluorescens Pf0-1]
          Length = 1092

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 148/587 (25%), Positives = 276/587 (47%), Gaps = 26/587 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             T ++ +         + +  E+ + A   S D +   +    R +        + G  +
Sbjct: 516  VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITERDTGRYLEVNDGFCRLTGYRA 575

Query: 443  GSMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + G     +  W         +  R+ L + +  +      E   R    +   + + 
Sbjct: 576  DEVVGKTVYQVGIWAE-------EKQRSALLAELQIKGRVHHQEMLGRNKRGEILTVEVS 628

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + P++    +    +  A D++  K +   I   A+ D LT +PNR   +DRL+  + L 
Sbjct: 629  VEPITL--NETACLLLTARDVSLLKNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 686

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F 
Sbjct: 687  KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFV 745

Query: 619  IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L     +      ++ + A  +R+ ++ P+ L  + + VT SIG A       T +++
Sbjct: 746  VLLSGLEGTRNEVSAQVRELADTIRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDL 805

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            LK A++A+Y AK  G N  + +  +     S+R+ ++ DL LA+   E  + Y P I   
Sbjct: 806  LKRADIALYRAKDSGRNTTQMYHNTMQKAASERLRMETDLRLALSRGEFDVHYQPQIDAR 865

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            D  I+G EAL++W+HP+ G  S +EF+ + E+  +I  +  ++L+           +  +
Sbjct: 866  DNRIIGAEALVRWNHPELGAQSPTEFIKVLEDSGLILEVGTWILDEACEAFKQLIAEKLI 925

Query: 792  PPIFIL--INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P+     +NI+ +    N+  E ++  +S      S +KL  +E +V+ N E +   + 
Sbjct: 926  DPLAFSLCVNISPRQFRQNDFVERIEHSMSSHGLPCSLLKLEITEGIVIQNLEDTISKMR 985

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
            RL+K+G+S  +DDFGT  S L+YL  +P DT+K + S +    +      I+R+I+ MA+
Sbjct: 986  RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFIRDATTDPNDAEIIRAIVAMAR 1045

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++E  +IA+ +     +  L  +GC   Q    + PL    +  LL+
Sbjct: 1046 SLELEVIAEGVETPEQLAFLQGLGCHLYQGYLHSRPLPLEGLKGLLE 1092



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 3/181 (1%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +     + A   ++ + I+    V       +L  F       A       +    ER 
Sbjct: 229 LVSMEVQFRASNGQIHDGILSAQKVELEGQPYLLSTFLDTTERKA---AEHALKDSQERL 285

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            LA+  +    WDW I    +  +   A + GL     H     +   +   +RD+ R  
Sbjct: 286 DLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPKPFHESFEEFFEGVPGEERDSMRDA 345

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S      G  Q  +RV+  D    ++  R R   + NG  LR  G   DIT+Q +  +
Sbjct: 346 YRSLREGPAGNYQLTYRVQLPDGSSRYLESRARLYRDDNGVPLRMAGTLLDITDQVEREQ 405

Query: 528 G 528
            
Sbjct: 406 R 406



 Score = 98.1 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 1/133 (0%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             S+  +    +   A+ G+    W WDI R +++ +     + G            +L 
Sbjct: 20  RRSEQSWESAPQLLAALNGARLGAWYWDIERGQISWSRGTQALFGFDPRQPLPEDLEYLD 79

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   DR        + +           R+R  D   HW+ I    + + +G   R IG
Sbjct: 80  LLPPEDRAKTIRAFHAVIAGAPLEQAMHHRIRWPDGSLHWLEINGSLLPDKHGRP-RMIG 138

Query: 515 IANDITEQKKSLE 527
           +  +IT Q++  +
Sbjct: 139 VIREITHQRQREQ 151



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 15/166 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +          +      +   G ++
Sbjct: 391 AGTLLDITDQVEREQRLVASEEKFATLFQVSPDPICVTRQETGEFIEINSSFSQTFGWSA 450

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     +     +        ++  +  + G       V+  D Q    +I  R +
Sbjct: 451 SDVIGHTAEEIGLW--DASAKSLQRIERVIREQ-GLSNVAIIVQHKDGQSLTCVISSRQI 507

Query: 503 SNSNGDILRYIGIANDITEQKK------SLEGILCNAFQ---DNLT 539
             S G+    +    DIT+Q++      + E     AF    D +T
Sbjct: 508 --SVGNQPCIVTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAIT 551


>gi|289676144|ref|ZP_06497034.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 828

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 155/561 (27%), Positives = 262/561 (46%), Gaps = 14/561 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 313

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 314 GQH--DSAFYAAMWHQLTAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVA 369

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL   L  S    +L   V+ +D+D
Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L    + G EALI+W+HP +G +
Sbjct: 549 YTCDLSEQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGEV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E
Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L +DDFGT  S LSY
Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 727

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LT  
Sbjct: 728 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 787

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GC+ IQ   V+ PL       
Sbjct: 788 GCEQIQGYIVSLPLDAEEFRA 808



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +          G + 
Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ +++R      +      +        R+R  +       +  +P
Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIERMKKHGFVK----DMRVRIRHNNGDIRLCELSSQP 236

Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             ++  +      + I  DITE ++  E +   A 
Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +       + +       D +    +     +          GL    + G     L  
Sbjct: 10  REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGLPLDEVIGKTPTELNL 69

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    ++  +P    +  I   + 
Sbjct: 70  WAVPGIGPKVLLQL-----QTDDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122

Query: 515 IANDITEQK------KSLEGILCNAFQ 535
           I  DIT+ K      +  E     AF 
Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149


>gi|291613133|ref|YP_003523290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gi|291583245|gb|ADE10903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1044

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 140/589 (23%), Positives = 259/589 (43%), Gaps = 20/589 (3%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATI 437
            +     ++  +             E   LA      S D +   D     +   P    I
Sbjct: 460  IRSHGEMEGAVVVFEDISERRQKDEALKLASSVYQSSNDGILVTDEKNRILDVNPAFTRI 519

Query: 438  LGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G     + G     +    H  D   ++ +  S +    G  Q E      + + H   
Sbjct: 520  TGYTLEDVRGKDPGIFQSGKH--DAQFYQQMWQSILD--DGHWQGEIWDLKKNGELHAKW 575

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            + I  +  ++G I R++G  +DITE+K+  E I   A  D LT +PNR+ F DR    + 
Sbjct: 576  LSISVIRRADGSIYRHVGQFSDITEKKRKDELIWEQANFDTLTNLPNRRLFADRFRQAIS 635

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
              A        ++ +D+D++K++ND  G ++GD +L+ + RR+   ++  D +AR+ G+ 
Sbjct: 636  AGARSGRY-GALLSLDLDQFKRLNDTFGHSMGDKLLIEVARRLTSCVREEDTVARMGGDE 694

Query: 617  FGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            F +IL    +       +    A  +R  +  P  L + E   ++SIG   +        
Sbjct: 695  FLVILNGLGSEQNEAAIRAELIAEKIRNELCRPYQLDKTEHHSSSSIGIVLFRGHSDDPE 754

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIR 729
             +L + + AMY +K +G N +  F  S          ++  L  A+E  E  L Y   + 
Sbjct: 755  RLLAHVDTAMYQSKAKGRNAICFFDSSMQEILEKRGQLETALRGALERKEFLLHYQLQMD 814

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                  +G EAL++W++ K G++S  +F+ +AEE  +I  I  ++LE     +  W+   
Sbjct: 815  -SSGRPIGAEALLRWNNAKLGSVSPVQFIPVAEESGLILPIGHWVLETACAQLARWQSDP 873

Query: 790  NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                + I +N+++    +      ++ ++ ++   P  +KL  +ES+V+ +   S L + 
Sbjct: 874  RFNRLCIAVNVSAIQFREAAFVAKVRNVLQQSGIQPWLLKLELTESLVLDDINDSILKME 933

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMA 906
             L+ +G+  ++DDFGT  S LSYL  +P D +K + S +       +   AI+++II MA
Sbjct: 934  ALKNLGVKFSMDDFGTGYSSLSYLSRLPLDQLKIDQSFVRDITTTDQHDAAIVQTIISMA 993

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++   +IA+ +  E   + L   GC   Q    A P+    +   L +
Sbjct: 994  LSLGMEVIAEGVETEEQREFLDLRGCQAYQGYLYAKPMPIEELEIKLAQ 1042



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           ++ +   L+G + L+ ++      + +  +      + +  +R  L +    + +W  D 
Sbjct: 322 SNFLLLWLLGSVTLLTVVSLTFYFRSIRQSRS---AVAASEQRLRLILGSVSNGIWGLDK 378

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH---IN--DRDNFRTILDSFVGYRRGR 478
             +        A +LG     +     +    IH    +       R  + + +   + R
Sbjct: 379 DGNTTFVNAAAADMLGYTPEELFDKPMH--ATIHHSYPDGTHYPAERCPMHATLVDGKPR 436

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  +  +   D    ++     P+  S+G++   + +  DI+E+++  E
Sbjct: 437 MGIDEVLWRKDGSELYVDYSSHPIR-SHGEMEGAVVVFEDISERRQKDE 484


>gi|77456420|ref|YP_345925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
 gi|77380423|gb|ABA71936.1| putative sensory box GGDEF/EAL domains protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 643

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 153/624 (24%), Positives = 274/624 (43%), Gaps = 21/624 (3%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDND----IIQPALVGGLVLIVILIGFTVIQHVLA---T 393
           +   +L  +W  G    +    D+       Q       V +   + F     +      
Sbjct: 17  LLYLVLAVVWLQGTGYLLNSFFDSSDELLRWQLINGYLFVALSAGLIFLARARLFECLGI 76

Query: 394 GYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-I 449
           G   +   +D ER   A      + + V   D     V        I G     + G   
Sbjct: 77  GARLRERQADRERLRQAAAVFDCTREGVLVTDRQGLIVHVNRAFMEITGYQRDEVIGQQP 136

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    H      F   + + +  R      E   R    + +     IR + + +  +
Sbjct: 137 SLFKSGHHP---PGFYQAMFASLQAR-DEWSGEIWNRRKSGEIYPQWQTIRVIRDDDNRL 192

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+ + +DI+  K S   +   A  D LT +PNR  F DR    L  + T       ++
Sbjct: 193 SHYVAVFSDISAIKDSEHELKHLAHHDPLTDLPNRLLFSDRAEQALASAQTHKRG-CALL 251

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +ID+D +K IND LG  +GD +L ++  R+  L      LARL G+ F ++L S     +
Sbjct: 252 MIDLDHFKLINDSLGHTIGDRLLKAVAARLQALFGPGITLARLGGDEFAVLLESCPQPAQ 311

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  ++  P  L   E+ + AS+G + + S  +++ ++L+NA+ A++ AK  G 
Sbjct: 312 AAALAQRILDALKEPFCLDGHELFINASLGISLFPSDALSAEQLLRNADAALFKAKSSGR 371

Query: 690 NHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +        +  ++   +L  A+E  EL + Y P+  L    ++G+EAL++W+HP
Sbjct: 372 NGYALYTEELTAHAQQRVEIAFELRRALEQQELRVYYQPVHDLQTSRLIGVEALVRWEHP 431

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S +EF+ IAE   +I  I+ +++++  R +  W+    +   F+ +N++S+    
Sbjct: 432 QRGLVSPAEFIPIAERTGLISEIDAWVMQQACRQMCQWQQAGVVLS-FVAVNVSSRLFAR 490

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            EL + +  ++ +T   P+ ++L  +ES VM +PE +   + RLR++GI L +DDFGT  
Sbjct: 491 RELYQQVAQVLHETGLDPAYLELEVTESAVMDDPEVALEQMHRLRELGIRLAIDDFGTGY 550

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G    E   AI+R II +A+++   + A+ I       
Sbjct: 551 SSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALARSMGMQVHAEGIEQVEQAA 610

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L    CD  Q      P+    I
Sbjct: 611 FLLGQACDLGQGYWFGRPVPEAQI 634


>gi|302879176|ref|YP_003847740.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302581965|gb|ADL55976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1134

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 149/563 (26%), Positives = 262/563 (46%), Gaps = 16/563 (2%)

Query: 404  GERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
             E+  +A     + + +   D     +        I G +   + G     L     N++
Sbjct: 572  EEQLRVAAAAFETHEAIMITDAHGTIIKVNQAFQRITGYSQEEVLGENPRILSA-GRNEK 630

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              +  +         GR + E   +    Q +   + I  + + NG    Y+ I +DIT+
Sbjct: 631  SFYSAMWQQL--TTLGRWRGEIWDKRKSGQIYPKWMTITAVRDENGKTTEYVAIFSDITQ 688

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K + E I   AF D LT +PNR+  LDRL   L +SA        V+ +D+D++K +ND
Sbjct: 689  RKLAEEEIRNLAFYDALTRLPNRRLLLDRLHAALSVSARSRRF-GAVLFLDMDRFKTLND 747

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636
             +G   GD +L+ +  RI   ++  D +ARL G+ F I++   +   +     IA  A  
Sbjct: 748  TMGHDYGDLLLIEVAERIKLCVREIDTVARLGGDEFVILVEEIDTRAEETSKHIAAIAEK 807

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +R ++++P  L E+    + SIG   +   + ++ ++LK+A++AMY AK  G N V  F 
Sbjct: 808  IRSALSVPYRLKEKHHHSSPSIGVCLYRGIEESTDDLLKHADMAMYQAKDSGRNAVRFFD 867

Query: 697  VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                ++      ++ DL  A+ N +L L Y   +   D   +G EAL++W HP  G +S 
Sbjct: 868  PLMQQAVEARVTLENDLRHALPNDQLQLYYQIQVD-NDRRAIGAEALVRWIHPIRGMVSP 926

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            + F+ IAEE  +I  +  ++L+     +  W D+     + + +N++ +        E +
Sbjct: 927  AHFIPIAEETSLILEVGAWVLKTACLQLAVWADRPMTCNLILAVNVSVQQFKQVGFVEHI 986

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              LI      P R+KL  +ESVV+ +       +  L+ +G+ L++DDFGT  S LSYL 
Sbjct: 987  AELIRAYCIVPQRLKLELTESVVLNDVSDIVQKMCALKSLGVRLSMDDFGTGYSSLSYLK 1046

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S +      E    ++++II MA+N    +IA+ +  E  +  L + GC
Sbjct: 1047 NLPLDQLKIDQSFVRNIATDENDAVMVKTIIAMAQNFRLNVIAEGVETEAQLAFLKQNGC 1106

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
               Q  +   P         L+ 
Sbjct: 1107 MCYQGYYFGKPAPIEQFQSQLEA 1129



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +         +    +R       SG+ +W+ DI       +     + G     + G
Sbjct: 437 RDITERKKSEAALRYSEQRLRDVSEASGEYLWEIDINLGYTYVSNRSIEVKGYTPEQLLG 496

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                  ++   D D    I++  +  +    + + R         W  +   P  +  G
Sbjct: 497 HAPA--EFMPPEDIDMAARIVNLAIS-KNQPFKLQHRDITPSGAILWEEVSGVPFYDDAG 553

Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533
            +L   G   +IT +K   E +   A
Sbjct: 554 HLLGLRGTGRNITGRKLKEEQLRVAA 579



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +D  R         D+VW        +   P +  +LG A  ++ G       +I     
Sbjct: 71  TDEARLRTLFNTIKDLVWLKAPDGVYLACNPVVERMLGTAEAAIVGRTDY--DFISREQA 128

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           D+FR    + +      +  E  +   D            P+ +  G ++   GIA DIT
Sbjct: 129 DSFREHDRAAMNTGTVCIN-EGWLTFKDTGYCGLFETSKTPVYDDTGQLIGVFGIARDIT 187

Query: 521 EQKKSLE 527
           E+K++  
Sbjct: 188 ERKRAEA 194



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            ER  L   A   + D +   +                G +   +     + L     + 
Sbjct: 327 EERLELTQFASDYAPDCILWVNEQARICYANEAALHCHGFSKEELLSMTIHDLD---PDF 383

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             +        + ++ G +  E R R  D     + +    +   + +    I    DIT
Sbjct: 384 PPDVWLAHWHELQHKGG-ITIETRHRRRDGSIFPIEVSANFVKFGDKE--YNIAYHRDIT 440

Query: 521 EQKK--SLEGILCNAFQD 536
           E+KK  +         +D
Sbjct: 441 ERKKSEAALRYSEQRLRD 458



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 62/206 (30%), Gaps = 9/206 (4%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
             + ++RA +      +   W            +          G     ++  F + + 
Sbjct: 130 SFREHDRAAMNTGTVCINEGWLTFKDTGYCGLFETSKTPVYDDTGQ----LIGVFGIARD 185

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-- 447
           +         + +  ++    +      V       + +        +LGL+   + G  
Sbjct: 186 ITERKRAEAALKNSEQQARNLIDKLQVGVLLQSARAEILLCNQIALDLLGLSEAQLLGKS 245

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPMSN 504
                   IH +      +     V      L ++  +   R +     W+++   P  N
Sbjct: 246 SFDPDWNVIHEDGSPFPGSEHPVPVSIATKSLVHDVVMGVYRPSKRDRVWLLVSAAPQLN 305

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
            N ++ + +    DITE+KK  E + 
Sbjct: 306 PNNEVEQVVCTFVDITERKKMEERLE 331


>gi|89902139|ref|YP_524610.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346876|gb|ABD71079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 860

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 146/622 (23%), Positives = 281/622 (45%), Gaps = 14/622 (2%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
              +      W     +A    +   ++   L+  L  ++       I         +  
Sbjct: 247 WSLSVAPRLGWGDRAGLAGKTFIG--LLFSWLLAYLAKLLTRQRAYKINLEQQVTERTAE 304

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLPYIHI 458
           I +   + S  +    D++++ D+    +   +P  A +L     ++ G   +    +  
Sbjct: 305 IQASERQLSATLDAIPDLLFEMDLNGRYLLCHSPRAADLLDAPVQALLGKTVS--EVLPP 362

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +     L             +F + + + Q  W  + +   + S G   R+I I+ +
Sbjct: 363 AAAEVVLQALKQA-HELGLAHGQQFELASPE-QDRWFELSVARKAVSAGQEPRFIVISRE 420

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+K++ + I   A+ D LT +PNR    DR+   L  +         +M +D+D +K 
Sbjct: 421 ITERKQAEKDIQKLAYFDALTSLPNRSLLNDRIRHALSEADRRQE-SLALMFLDLDHFKN 479

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +LV+L  R+  +++  D +ARL G+ F ++L    +       A  + 
Sbjct: 480 INDTLGHGVGDQLLVALAARMQSVVREQDTVARLGGDEFILLLPDTGSKGAA-RVAQKLL 538

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++I++P+ +   E+TVT S+G A +         + + A++AMY AK  G N  + +   
Sbjct: 539 QTISLPVQIGPHELTVTPSMGIAQYPRDGDDLETLSRRADIAMYRAKQSGRNGYQFYTTE 598

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I+  L  A+E  +L L Y P + L    IVG+EAL++W HP+ G ++ +E
Sbjct: 599 MQLTTDRALQIENALRRALERDQLRLHYQPQLSLSTNRIVGVEALLRWQHPELGQVAPAE 658

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE    I+ I  ++L   A+    WRD   + P+ + +N+++      +L E +  
Sbjct: 659 FIAIAEASGQIQGIGEWVLRTAAQQAKQWRD-LGLAPMTMSVNLSAVQFRHPDLPELVAR 717

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++    P  ++L  +E V + +P  +  ++  + + G+ +++DDFGT  S LSYL   
Sbjct: 718 ILAEAQLPPQFLELELTEGVALHDPLGAIAVMEHMHQQGVKISIDDFGTGYSSLSYLKRF 777

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K + S +       + +AI+ +II MA ++    IA+ +  +  +  L   GCD 
Sbjct: 778 HAHQLKIDQSFVRDITDDPEDLAIVNAIISMAHSLGMNTIAEGVETQAQLTLLRAQGCDE 837

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q      P     ++  L+  
Sbjct: 838 VQGYFFCRPQPPEELVAFLRAH 859


>gi|319760758|ref|YP_004124695.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330822678|ref|YP_004385981.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Alicycliphilus denitrificans
            K601]
 gi|317115319|gb|ADU97807.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329308050|gb|AEB82465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Alicycliphilus denitrificans K601]
          Length = 1206

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/610 (23%), Positives = 267/610 (43%), Gaps = 20/610 (3%)

Query: 357  AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                 +     +P      V   + I        L        I      Q+  +  + D
Sbjct: 601  TPMGMVMVMFREPLAQVEFVCSALQIFAARASAELQRQMDDARIRH----QASLLDRARD 656

Query: 417  IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             +   D+             + G +     G  R+    +H +D ++F       + +  
Sbjct: 657  AIIVRDLEHRITFWNEGAERMYGWSREEALG--RSMASLLH-HDPEDFLHATAQVLQH-- 711

Query: 477  GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
            G    E   R+ + +   +  R   + N  G+    + I +DI  +K     I   AF D
Sbjct: 712  GDWSGEIVQRSRNGRSIEVEGRWTLVRNDQGEPESILAIDSDIGPRKSHEREIQRLAFFD 771

Query: 537  NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
             LTG+PNR  F+ R+   L  +         ++ ID+D +K +ND LG   GD +L  + 
Sbjct: 772  PLTGLPNRAQFMQRMGHALATARRQHQG-GALLFIDLDNFKTLNDTLGHDQGDRLLQLVA 830

Query: 597  RRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLERE 651
            +R+   ++  D +ARL G+ F ++L          +         +   + +P  L   +
Sbjct: 831  QRLSTCVRSVDTVARLGGDEFVVLLEQLTAHAATLAEHANKVGEKILNVLCVPYALAGHQ 890

Query: 652  ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
               T SIG A +  +  +  ++LK A+LAMY AK+ G + +  F     R   +R  ++ 
Sbjct: 891  YRSTPSIGIALFDDTPTSMGDLLKQADLAMYQAKNAGRSTLRFFDPGMQRAVDERATLEA 950

Query: 710  DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            DL  A+   E  L Y P +      I+G+EAL++W HP+ G +S ++F+ +AEE  +I  
Sbjct: 951  DLRNALSQQEFTLHYQPQVDSRGG-ILGVEALLRWTHPQRGMVSPAQFIPVAEETGLILP 1009

Query: 770  INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            +  ++L +    + +W+    +  + + +N++S+   D      +  +++ T    +++K
Sbjct: 1010 LGRWVLHKACTLLAAWQKFPGLAHLTMAVNVSSRQFRDPGFVGDVARVLAVTGAPSAQLK 1069

Query: 830  LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
            L  +ES+++ +   +   +  LR  G+  +LDDFGT  S L+YL  +P + +K + S + 
Sbjct: 1070 LELTESLLVEDMVSTIATMEALRAHGVGFSLDDFGTGYSSLAYLKRMPLEQLKIDRSFVR 1129

Query: 890  GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 E   AI+R+I+ +A ++  ++IA+ +  +     LTR GC   Q      PL  +
Sbjct: 1130 DLLADENNAAIVRTIVALAASLGLSVIAEGVETDEQRNWLTRAGCTVYQGYFFNRPLSSD 1189

Query: 948  SILKLLKERF 957
             +  LL+   
Sbjct: 1190 RLDGLLRSYL 1199


>gi|149920383|ref|ZP_01908853.1| hypothetical protein PPSIR1_08781 [Plesiocystis pacifica SIR-1]
 gi|149818825|gb|EDM78267.1| hypothetical protein PPSIR1_08781 [Plesiocystis pacifica SIR-1]
          Length = 696

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 149/600 (24%), Positives = 285/600 (47%), Gaps = 12/600 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            ND+I  A +G   L         ++  +        +        L +  + D  W+WD
Sbjct: 100 ANDLITTAELGTAAL------SRAVRQTVEQSRTLAALTEARANHDLLLDATYDGTWEWD 153

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  D+V  +P  AT+ G+ +        +W   +H +D    R  L + +  R    QYE
Sbjct: 154 VRGDQVHYSPRCATLFGIRNVEGEHGGESWFGRVHPDDLPGLRDNLTALIEGRVTVHQYE 213

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R+   D  +  ++ R     ++ G+ +   G   DI  +K + +  + +   D LTG+P
Sbjct: 214 HRIARGDGSYMRVLSRGLARRDARGEAISLAGSFTDINRRKPAEDQSVPSTRNDELTGLP 273

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           +R+     L   +  +  D   + +V+ +++D++K +ND +G+   D VL  L RR+   
Sbjct: 274 SRRVLHSELEQAIKRTHADAEHKFSVLFLNLDRFKVLNDSIGLDSADQVLTQLARRLQAT 333

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFA 661
           +    ++ R  G+ F I+L +     +    A A+ + +   P  +  + I  TASIG A
Sbjct: 334 VSGKALVCRYGGDEFAILLDALEQFDEADTLAEAIHEDLRRQPFEIDGQTIFTTASIGIA 393

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719
           +   +    +E++++A +A   AK  G +   +F   +     + +  +  L  A+   +
Sbjct: 394 NSDRNYERPAEVIRDAGVATSRAKRHGKSQSSTFDKTMRQEALNTLRTQMQLREAIVRQQ 453

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             + Y PI+ L   ++ G EAL++W+HPK G I   EF+ +AEE  +I  I  F+L++  
Sbjct: 454 FEVYYQPIVSLASSKLTGFEALVRWNHPKRGIIGPIEFIALAEETGLIVPIGQFVLKQAC 513

Query: 780 RDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             + +W  + +    + I +N++   L    L   ++A++++T   PS +KL  +ES ++
Sbjct: 514 TQMAAWHAKYDEAKDVSISVNLSGHQLNSPTLVAEIEAVLAETALPPSAVKLELTESTLI 573

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRI 896
            +P  ++ +L RLR  GI L +DDFGT  S LSYL     D +K + S +   G  +++ 
Sbjct: 574 DDPTSAQRILKRLRDRGIQLYIDDFGTGYSSLSYLHRFAIDGLKIDKSFVDMVGRDDRKA 633

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           AI+ SI+ +A N+   ++A+ +      + L  + C   Q    + P+  +   KL++ +
Sbjct: 634 AIVPSIVGLAHNLGVGVVAEGVETRDQAQTLALLDCAEAQGYLYSRPVPQDQAAKLIERK 693


>gi|302185958|ref|ZP_07262631.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 828

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 156/560 (27%), Positives = 269/560 (48%), Gaps = 13/560 (2%)

Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              E+  LA      + + V   D  +           I G +     G   + L     
Sbjct: 257 QMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEITGYSEDEAIGQTPSLLAS-GQ 315

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D   + ++         G  Q E   R  + + +   + I  + N +  +  ++ +  D
Sbjct: 316 HDSAFYASMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNFLTHFVAVFAD 373

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+  K +   +   A  D LTG+PNR  F +RL   L  S    +L   V+ +D+D++K 
Sbjct: 374 ISSLKHAQARLDYQAHHDPLTGLPNRILFENRLQAALLHSEESGSL-GAVLFLDLDRFKH 432

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A  + 
Sbjct: 433 INDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIANKLL 492

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VE +   
Sbjct: 493 ACFNTPFQAGEHELYISPSIGSCVFPTDGNDVATLVKNADAAMYRSKAKGRNRVERYTCD 552

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +  S+R+ ++++L  A+E ++L LVY P I LM + + G E LI+W HP +G++    
Sbjct: 553 LTAQASERIALEQELRRALERNQLTLVYQPKIDLMTQTLAGAETLIRWSHPTFGDVPPEH 612

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E ++ 
Sbjct: 613 FIPLAEENGMILQIGDWVLEKACRQMGVWRK-TCKPFGPLSVNLAGAQLRQTNLLERIEQ 671

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L +DDFGT  S LSYL  +
Sbjct: 672 LLNDNGLEPGCLQLEITENFIMSQTQEALAVLHKLKHLGVQLAIDDFGTGYSSLSYLKRL 731

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LT  GC+ 
Sbjct: 732 PLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSEGCEQ 791

Query: 935 IQDSHVASPLGFNSI-LKLL 953
           IQ   V+ PL       + L
Sbjct: 792 IQGYIVSLPLDAEEFCARFL 811



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 50/153 (32%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +        I G + 
Sbjct: 121 LVIVRDITQLKQARQQLQLSEEKFAKAFHASLDGLAITRQQDGMLLEVNEGFCRITGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ +++R      +      R        R+R A+       +  +P
Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLVERMKKHGFVR----DLRVRLRNANGDIRLCELSSQP 236

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  D L  + IA D+TE  +  E +   A 
Sbjct: 237 LIIAGDDCL--LTIARDVTEGSQMQEKLHLAAT 267



 Score = 44.6 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 15/153 (9%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY- 455
           +       + +       D +    +     +          GL    + G     L   
Sbjct: 11  EASCLSEGKFASVFAQCPDAMIIASLADGHIMDVNDAFVERTGLTLDEVVGKTPTELNLW 70

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                       L             E   R  + +    ++  +P       I   + I
Sbjct: 71  AVPGIGPKVLQQL-----QTGDIHNLEIPFRRKNGETFSGLMSAQPF--EQSSIPAVLVI 123

Query: 516 ANDITEQKKSLEGIL------CNAFQDNLTGIP 542
             DIT+ K++ + +         AF  +L G+ 
Sbjct: 124 VRDITQLKQARQQLQLSEEKFAKAFHASLDGLA 156


>gi|114564545|ref|YP_752059.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114335838|gb|ABI73220.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 829

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 133/580 (22%), Positives = 255/580 (43%), Gaps = 13/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  V    +  Q ++S+ ER  + +   GD V   D         P    + G    
Sbjct: 242 LVTVVDVSEVKHAKQALYSEKERLRVTLNSIGDAVIATDTRGLITFMNPIAERMTGWRLK 301

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILD----SFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                       +H+ D D  + +L+    +    R   +     + +      ++    
Sbjct: 302 DALHQKIE--DVMHLKDSDTQQPLLNPLYLALREQRIVAMALNSLLTSRGGHVFYVEDSA 359

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ N NG+++  I + +D++E       +   A  D LT +PNR    DRL+     + 
Sbjct: 360 APIRNENGEMIGAIMVFHDVSEAMAMAMKMSHLANHDQLTDLPNRILLQDRLSVACSTAR 419

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           +       ++ IDID +K +ND LG   GD+++  + RR+  L+     LARL G+ F I
Sbjct: 420 SYGTKAAALL-IDIDHFKFLNDSLGHQYGDELICMMARRLRSLIPASYTLARLGGDEFVI 478

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++    +    +  A  + +++  P  L  ++  V+ SIG + + +  + + E++++A++
Sbjct: 479 LMSETRSVEASSQLASTLVEAMHEPFVLDNQKFNVSISIGVSVFPNDAVDAEELMRHADV 538

Query: 680 AMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N    F         +R  ++  L  A+ N EL++ Y P I L    I+G
Sbjct: 539 AMYRAKQEGRNRFCFFSHDLESSLMERHHLETRLRKALINDELFVHYQPKIDLQTNIIIG 598

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++  + +   IS +EF+ +AEE  +I  +   +L +   +   W +  +   I I 
Sbjct: 599 AEALVRLANDEGELISPAEFIPLAEESGLIIMLGKQVLNKACAEAKRWLEMGHT--IPIS 656

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+A+    D +L   ++  +         ++L  +E+ +M +    +  L  L  +GI 
Sbjct: 657 VNVAAAQFADPDLAGMIKKALLDHNLPAHLLELEITETALMIDAADMQNKLSELISLGIK 716

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S L+YL     D +K + S +      +    I+++II + K++   +IA
Sbjct: 717 IAIDDFGTGYSSLAYLKKFNVDVMKIDMSFVKDMLNNKHDYEIVKTIISLGKSMGLVLIA 776

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  +     L  +GC   Q    + PL        + +
Sbjct: 777 EGVETKEQSHALVELGCFMGQGYLFSRPLNSTDFEAFISQ 816


>gi|170724692|ref|YP_001758718.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella woodyi ATCC 51908]
 gi|169810039|gb|ACA84623.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella woodyi ATCC 51908]
          Length = 1481

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 260/566 (45%), Gaps = 12/566 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  D +  + A   + + V   D       +      ILGL   + H    + L   
Sbjct: 923  QRQLEDDVKLLAQAFENTSEGVLILDAKERIKVSNKAAQIILGLDVEAFHSKTFSSLMVA 982

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 D    +L      R      E     A+     + + I  M    GDI+ Y+ + 
Sbjct: 983  KEGRLDEVAKLL-----GRGDSWTGEREFICANGNNCPVWLNISTMLGGKGDIVHYVAVF 1037

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K+S   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D++
Sbjct: 1038 SDITERKRSEAELRRLANYDVLTGLPNRSLFSTRLAQSIHRA-EHSGEKLALIFLDLDRF 1096

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV    R+   +     L R  G+ F I+L   ++   I      
Sbjct: 1097 KHVNDSFGHSMGDALLVEAASRLQSCIHDGHTLCRFGGDEFVILLRDVSDIDMINHICTE 1156

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            + K I  P  L  RE  ++ SIG + W      +  ++KNA+ AMYHAK  G  + + + 
Sbjct: 1157 LLKQIETPFELYGREFFISTSIGVSLWPDDATQAENLIKNADQAMYHAKEEGKGNFQYYS 1216

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
               +S     + ++ +L  A+E  E  L Y P + +  D++++G+EAL++W H + G I 
Sbjct: 1217 SERNSEALYHLHLEAELRRAIERDEFELHYQPQVDILKDDKLIGMEALLRWRHHQDGLIR 1276

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +  F+ +AE   +I  I+ ++L +       W          + +NI++      +  EG
Sbjct: 1277 TDIFIKVAESCGLIIDIDRWVLRQACIQGAQWASVYG-ESFKLSVNISAVHFRQPDFIEG 1335

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++A+I +T      +    +E V+M     ++  L  L+ +GI + +DDFGT  S L+YL
Sbjct: 1336 VKAIIHETQIPAKILNFEITEGVLMKELNIAKAHLKELKCLGIDVAIDDFGTGYSSLAYL 1395

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +    T+K + S +      E   AI  SII +A+N++ +++A+ +  +  ++++   G
Sbjct: 1396 RHFDVTTLKIDRSFLIDIATNEADQAIASSIIELARNLKLSVVAEGVETKAQLEQVFSRG 1455

Query: 932  CDYIQDSHVASPLGFNSILKLLKERF 957
            C  IQ  + + PL    + + +K + 
Sbjct: 1456 CYIIQGYYFSKPLTQPEMERYMKSQN 1481



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              + + A    ++ +    +R   ++ GS   +W+W             A + G  S +
Sbjct: 788 GRQRQISAFRVVNEALVESEDRLRQSLKGSDSELWEWRYDTQMFNLENQGAALTG--SKN 845

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503
           +   + ++   +H +++       +S +     R + E+R R  D  + W  +R RP+  
Sbjct: 846 ILLTLDDFP--VHRDEKKGVLESWESMLNGDSDRFEVEYRYRREDKSWGWTRVRGRPVDF 903

Query: 504 NSN-GDILRYIGIANDITEQKKSLEGILCNA 533
           +   G I R  GI +DIT Q++  + +   A
Sbjct: 904 DPETGRITRVAGIYSDITTQRQLEDDVKLLA 934


>gi|297538683|ref|YP_003674452.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258030|gb|ADI29875.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Methylotenera sp. 301]
          Length = 1591

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 142/611 (23%), Positives = 276/611 (45%), Gaps = 15/611 (2%)

Query: 349  IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQ 407
            +  +   +    R +  +     +   + ++       I+    +   ++   ++ E R 
Sbjct: 980  LATLIGSIQFESRTNPSLGAVRTLSNSIKVIRDASGRAIRATGTSLDITERKLAELEFRI 1039

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            +     S + +   D+ +  +        I G  +    G     +   H    ++F   
Sbjct: 1040 AATAFESQEGMMVTDVNKIILRVNKAFTKISGYTAEEAVGQTPRLVSSGH--HHEDFYAS 1097

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +   +    G  + E   R  + + +   + I  +   NG +  Y+    D+T +  +  
Sbjct: 1098 MWQNIDA-SGYWEGEVWNRRKNGEVYPQHLTITAVMGDNGIVTNYVATFTDVTLRNAAEA 1156

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I   AF D LT +PNR+  +DRL   L  +         ++ +D+D +K +ND LG  V
Sbjct: 1157 EINHLAFYDVLTRLPNRRLLIDRLNHALS-AGARLGWGGALLFLDLDHFKTLNDTLGHDV 1215

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIA 642
            GD +L  +  R+ + ++  D +ARL G+ F ++L   +      + +    A  +  SI+
Sbjct: 1216 GDLLLRQVADRLTDCVREGDTVARLGGDEFVVMLEDLSKHPLEAAGQAETIANKILISIS 1275

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P  L       TASIG   ++ ++ +   +LK+A++AMY AK  G N +  F  +   +
Sbjct: 1276 QPYQLGASAYQTTASIGVVLFSENEHSQDVLLKHADIAMYQAKKMGRNTLCFFDPNMQEA 1335

Query: 703  DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +   ++ DL  A++N++  L Y   +     + +G EALI+W HP+ G +S  EF+ +
Sbjct: 1336 INMRAALEVDLRKALDNNQFELYYQVQVD-RLGKALGAEALIRWIHPERGLVSPLEFIPL 1394

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AEE  +I  I  ++LE     + +W+ +     + + IN+++K    N   + +QA +  
Sbjct: 1395 AEETGLILPIGQWVLETACAQLKAWQTKRQTQALTLSINVSAKQFYQNTFAKQVQAAVKH 1454

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            +  +P R+KL  +ES+++ N E +   +  L+ IG++ +LDDFGT  S L YL  +P   
Sbjct: 1455 SGINPIRLKLELTESIMLENIEATITKMMELKNIGVNFSLDDFGTGYSSLQYLKLLPLYQ 1514

Query: 881  VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S +          AI+R++I MA+ +   +IA+ +  +   + L   GC+  Q  
Sbjct: 1515 LKIDRSFVREIAIDTSDQAIVRTVIAMAETLNLDVIAEGVETDEQRELLMNCGCNAYQGF 1574

Query: 939  HVASPLGFNSI 949
                P+     
Sbjct: 1575 LFGRPMPIAQF 1585



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            + V         +       + A   +    W+ D+     + + +   +  L       
Sbjct: 897  RDVTERKQSELKLLESSASLAKAQASAHLGSWELDLTTMVGSWSDENFRLYDLDPELGTP 956

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +L  IH +DRD     +   +    G +Q+E R   +      +   I+ + +++G
Sbjct: 957  SFAEYLELIHPDDRDLVTD-IQRQLATLIGSIQFESRTNPSLGAVRTLSNSIKVIRDASG 1015

Query: 508  DILRYIGIANDITEQKKSLEGILCNAF 534
              +R  G + DITE+K +       A 
Sbjct: 1016 RAIRATGTSLDITERKLAELEFRIAAT 1042



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 50/145 (34%), Gaps = 6/145 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  V    +  +       R    +    D++++ DI     +       +L +   +
Sbjct: 769 VAMLDVTQLKHTEEEKQRSDVRLQAIIDAIPDLLFEIDIHGRYFSAHSPSKHLLPVPPEA 828

Query: 445 MHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + G     +  +      N   + +       R + +  F +     +  W  + +    
Sbjct: 829 LIGKT---VREVMPEGAANIVMSAISEAYDTDRSQGRQ-FELTLPGGK-FWFELSVAKKP 883

Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528
              G+ +R+I ++ D+TE+K+S   
Sbjct: 884 KVAGEDIRFILLSRDVTERKQSELK 908



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 9/132 (6%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                R       SG  +   +     +   P    + G           +    +   +
Sbjct: 349 QVAKNRYLKLFKQSGSGILVLNQEHRILDANPAALEMFGYQREEFL--SLHLPRVLVDAE 406

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +    +L+S +         E+     D       +  R + +       Y  I +++T
Sbjct: 407 VERVNPVLESMMAGESHT--GEWVHVRKDGTKFMAEVNARKLDDHT-----YFAILHNLT 459

Query: 521 EQKKSLEGILCN 532
            +KK+   IL  
Sbjct: 460 NRKKNEHRILRL 471



 Score = 46.1 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 57/217 (26%), Gaps = 11/217 (5%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
            +  +  +  A    P  I I                 + +   +   L          +
Sbjct: 586 GWKALGAFPIARNGKPFAIFIVYSPEIDAFDQETIALLNEMTSDISFALDNFDREAQRRL 645

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q  L             +R       +                   + ++LG+  G + 
Sbjct: 646 AQDKLQLAQLEAA--ESRDRYRDLYEFAPIGYLSISKHGMITEVNWKVTSMLGVKRGEL- 702

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +++  ++   ++  ++ +  S      G  L ++ ++           +    M + 
Sbjct: 703 -NEQHFSQFVIDEEKSRWQKLFLSMQDLDGGEELNFDIKLTHVSGAIITANLNCLRMDDD 761

Query: 506 NGDILRYIGIANDITEQKKSLEGILC-----NAFQDN 537
               +  + +  D+T+ K + E          A  D 
Sbjct: 762 AEQPILRVAML-DVTQLKHTEEEKQRSDVRLQAIIDA 797


>gi|120608735|ref|YP_968413.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax citrulli AAC00-1]
 gi|120587199|gb|ABM30639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax citrulli AAC00-1]
          Length = 1499

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 139/627 (22%), Positives = 254/627 (40%), Gaps = 17/627 (2%)

Query: 342  PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
             A +    +      +   +    +            +++    +     A     Q   
Sbjct: 878  VARLGAQAYVGLQLRSAEGQPIGFVFVVFREPLQQPGMVISTLRIFAARAAAEMARQASD 937

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +   RQ+  +  + D +   D+             + G       G   +    ++ + +
Sbjct: 938  AHIRRQASLLDKARDAIIVRDLDHRITFWNEGAERLYGWTREEATGQ--SIAELLYQDTQ 995

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +  R          +G    E      D +   +  R   +    G     + I  DI +
Sbjct: 996  EFLRAT---RATQEQGEWAGEIVQFHRDGRRLDVEGRWTLIQGEQGQPDAILAIDTDIGQ 1052

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K +   I   AF D+LTG+PNR   +DR+   L  +         ++ ID+D +K +ND
Sbjct: 1053 RKATEREIQRLAFYDSLTGLPNRMLLMDRMRHALATAQRRRQG-GALLFIDLDNFKTLND 1111

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIA 636
             LG   GD +L  +  R+   ++  D +ARL G+ F +++   +      ++        
Sbjct: 1112 TLGHDQGDVLLQQVAARLNTCVRSVDTVARLGGDEFVVMIEGLSTHPGELAMSARTVGEK 1171

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   +A P  L       T SIG A +      T  E+LK A+LAMY AK  G N +  F
Sbjct: 1172 ILAVLATPYVLQGYHYRSTPSIGVAPFGDGRTSTVGELLKQADLAMYQAKTAGRNTLRFF 1231

Query: 696  RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                         ++ DL  A+   +  L Y P I      + G+EAL++W HP+ G +S
Sbjct: 1232 DPGMQAVVTARAELENDLRTALAREQFMLHYQPQIDRR-GSVTGVEALVRWPHPQRGMVS 1290

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              EF+ +AEE  ++  +  ++L      +  W+       + + +N++S+        E 
Sbjct: 1291 PGEFIPLAEETGLVLPLGRWVLHTACAQLARWQHVPGRGHLSMAVNVSSRQFHHEAFVED 1350

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +   I+ T    SR+KL  +ES+ + + E +   +  LR  G+  +LDDFGT  S LSYL
Sbjct: 1351 VVRAITATGAPASRLKLELTESLFVEDMETTIATMAALRSHGVGFSLDDFGTGYSSLSYL 1410

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              +P D +K + S +          AI+ +II +++++   +IA+ +        L + G
Sbjct: 1411 KRMPLDQLKIDQSFVRDLLADPNDAAIVDTIIALSRSLGLDVIAEGVETAEQRTRLEQAG 1470

Query: 932  CDYIQDSHVASPLGFNSILKLLKERFP 958
            C   Q    + PL   ++   L ++ P
Sbjct: 1471 CRAYQGYFFSRPLPETALEDFLVQKLP 1497



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 76/205 (37%), Gaps = 7/205 (3%)

Query: 334 YERAVLLIPAWILI-----FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              + + + A + I           + +   +R   +  + ALV      + L+     +
Sbjct: 105 QGPSRMRMAACMPIKTTDGLTLGAVVVLDTARRALEESHREALVAIASQAMALLELRRQR 164

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +A     + +    ER  L    + D +WDW++  D +     +  + G+   ++   
Sbjct: 165 RDVARRAQERAL--SEERFHLVARATADAIWDWNLTDDSMWWNEGMEVLFGVPLHTLPHD 222

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +W   +H  D D     + + +         E+R R  D  + W+  R   + ++ G 
Sbjct: 223 STSWTQRLHPEDSDRVLESIHAAIEGDALHWMDEYRFRRQDGTYAWIRDRGFVIRDAQGQ 282

Query: 509 ILRYIGIANDITEQKKSLEGILCNA 533
             R +G   DI+ QK+S      +A
Sbjct: 283 GQRMVGGMTDISAQKQSALQAQRDA 307


>gi|311694391|gb|ADP97264.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 809

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 163/652 (25%), Positives = 285/652 (43%), Gaps = 11/652 (1%)

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
            +  +T      + +  II+   + +    L   A              +T    N    
Sbjct: 160 GVILLTQFLKTFFVSILIIWI-FQHFVARHLTTMANYARDFSLTTTSKPLTLERPNT--- 215

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
           P+     +  V      + + + A     Q   ++  + S A+  S   V   D      
Sbjct: 216 PSNRNDELGRVTDAINQMRERLNADMERQQKDAAEIRKFSKAIEQSPSSVLICDRQWRIE 275

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRA 487
                   + G  + S+ G     L    I +RD             R G  Q E     
Sbjct: 276 FANQKFTQLTGYEAASIIGKHPGALGDNDIENRDSRHLWQSIRLQVQRVGVWQGEVNSVR 335

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            + +  W  + + P+ +  G    Y+ +  DI+ +K+  + +L  A  D LTG+PNR   
Sbjct: 336 RNGERFWEQLIVTPIKDEAGGTTGYLILGEDISIRKRYEQQLLRQANYDILTGLPNRMLA 395

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           LDRL   L  +   ++    VM +D+D +K IND LG   GD++L+   RRI   L+   
Sbjct: 396 LDRLKLALAQARR-ESTLVGVMFLDLDNFKHINDTLGHDAGDNLLIEAARRISSCLRGTS 454

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL G+ F +IL         +  A  + K+ + P  L  +E+ VT SIG A + +  
Sbjct: 455 TVARLGGDEFLVILPGLTGPEASSQVAERILKTFSPPYILNGQEVFVTTSIGIAIFPTDS 514

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYH 725
             S  +L++A+ AMY AKH+G +    F         +R+ ++  +  A+E  E  L + 
Sbjct: 515 DNSGTLLQHADAAMYQAKHKGKSSFAHFAPEMTEVSHERLKMESSMRRALELKEFELYFQ 574

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+      +  +EAL++W++P  G +    F+ +AEE  +I  I  ++L    R  + W
Sbjct: 575 PIVNTDSGTLCSVEALLRWNNPAMGMVMPDRFIPLAEETGLITPIGEWVLLEACRAAMGW 634

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           ++      I I +N++ +   D    E +   ++ +  +P +++L  +E +++ N   + 
Sbjct: 635 KEATGK-DIGISVNVSPRQFRDPGFTEAVMHALATSGLAPEQLELEITERLILDNSIETA 693

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            +L +L K GI L++DDFGT  S LSYL   PFDT+K + S +       +  +++R+II
Sbjct: 694 EILRQLDKAGIRLSVDDFGTGYSALSYLKSYPFDTLKIDKSFVQDVMKEPEDASLVRAII 753

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            MA ++   +IA+ +  E     L + GCD+ Q    + PL        L  
Sbjct: 754 NMAHSLGLRVIAEGVEEEAQTHFLKKEGCDFSQGYFYSRPLPAADFDAWLAN 805


>gi|330501786|ref|YP_004378655.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328916072|gb|AEB56903.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1376

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 148/562 (26%), Positives = 268/562 (47%), Gaps = 15/562 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G ++G +   +   L   
Sbjct: 808  QRRAEKDLRMAATVFEHSTAAILVTDPAGYIVQVNKAFSRVSGYSAGQVLDQLPGMLT-- 865

Query: 457  HINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +        +RG  + E  ++    +     + I  + +  GD++ Y+  
Sbjct: 866  --ADRQQATHMQYILGQLNQRGSWEGEVWLKRKGGENFPAWVGITAVHDEEGDLVSYVCF 923

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +    N    +M +D+D+
Sbjct: 924  FSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERH-NEWVVLMFLDLDR 982

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIA 631
            +K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           +  
Sbjct: 983  FKPINDSLGHAAGDRMLKDVAVRLSACVDGDDTVARMGGDEFTLLLQPRATREGALNRAI 1042

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  +  S+A P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+
Sbjct: 1043 HVAEQILSSLARPFVLEGREFFVTASIGIALAPQDGNELSQLMKNADTAMYHAKERGKNN 1102

Query: 692  VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + ++     S  +R+ ++ DL  A E  +  L Y P        + G+EAL++W+HP  
Sbjct: 1103 FQFYQADMNASALERLELESDLRHAQEQGQFVLHYQPQFSGDGRRLTGVEALLRWNHPTR 1162

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +   EF+ + EEL ++  +  ++LE   R + +W ++    P  + +N++++   + +
Sbjct: 1163 GLVPPDEFIPVLEELGLVVQVGEWVLEESCRQLKAWHEEKIRIP-KVSVNLSARQFGEGD 1221

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            L   +  ++ +T  +P+ +++  +ES++M +   +   L  L+++G+ + +DDFGT  S 
Sbjct: 1222 LTARIATILERTGVAPACLEVELTESILMRDVSSAMQTLNELKRLGLCIAVDDFGTGYSS 1281

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +     ++ L
Sbjct: 1282 LNYLKQFPIDVLKIDRSFVDGLPDGEQDAQIARAIIAMAHSLNMMVIAEGVESHAQLEFL 1341

Query: 928  TRMGCDYIQDSHVASPLGFNSI 949
               GCD +Q   +  P+     
Sbjct: 1342 REHGCDEVQGYLLGRPMQARQF 1363



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 58/163 (35%), Gaps = 13/163 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +      +Q +    +R  L      D+++  D   +    +P +  +LG +  
Sbjct: 659 IGVAKDITEQIERNQSLRDSEQRYRLLAESISDVIFSTDSALNLNYVSPSVEPVLGYSVN 718

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQ----------YEFRVRAADNQ 491
            +       L   +    +    +L+        R RL           + F    AD  
Sbjct: 719 WVIANSFYSLAA-NPQQLEGLNLLLERIRDALGERDRLNRLRDELPDQLFVFDCLRADGH 777

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              + +R+  M + +G     +G+  DI++Q+++ + +   A 
Sbjct: 778 KIPVELRLVLMWDESGRFEGILGVGRDISQQRRAEKDLRMAAT 820



 Score = 73.1 bits (178), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 9/156 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGS 444
            I  + +       +       S  V    D+++  D+   +V  +   +   LG +   
Sbjct: 528 SISDITSRKRIELSLIERERFWSEVVRSVPDLLYVHDMQNRQVLFSNHSLGLQLGYSKAE 587

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     + W+  +H +D + +  I +   V      L+   R R  + Q+HW  IR + +
Sbjct: 588 LRAMREDFWVQVLHPDDAEYYWRIRNLQKVVGDGLLLESVLRWRHRNGQWHWFSIREQAL 647

Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             + +G + R IG+A DITEQ +        + +D+
Sbjct: 648 ARDDHGRVSRLIGVAKDITEQIE-----RNQSLRDS 678


>gi|224371380|ref|YP_002605544.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
 gi|223694097|gb|ACN17380.1| GGDEF domain family protein [Desulfobacterium autotrophicum HRM2]
          Length = 708

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 158/620 (25%), Positives = 294/620 (47%), Gaps = 24/620 (3%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVI-----LIGFTVIQHVLATGYFSQGIFSDGERQSL 409
            + +T   D D    A   G    +      ++     +++L  G   + ++ +  R   
Sbjct: 87  ILMVTGMDDTDSTARAFEAGANDFIAKPINWVMLGYRAKYMLRAGQAFRELYLNENRLIK 146

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               +    W  D+V +  + +P+  ++ GL           +   I  N +D  +  + 
Sbjct: 147 TQKLAKLGNWQIDLVNNVFSCSPEACSLQGLNPMDKPVTFDGFFEPIIANQQDMVKQTIS 206

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + V  +       ++V   +     ++ +     + NG     +G+  D+++ K++ E I
Sbjct: 207 NAVKAKEN-FSLNYQVMNLNGTQKHILNQGEVFVDDNGVPEIMLGVVQDLSQLKQAEERI 265

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              AF D LTG+ NR  F+DRL T +  +   +  +  +  +D+D++KKIND LG  +GD
Sbjct: 266 RFLAFYDGLTGLANRMLFMDRLDTQIKKATRYNQ-KFALFFLDLDQFKKINDTLGHHIGD 324

Query: 590 DVLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAM 637
            +L ++   +   ++  D             +ARL G+ F ++L    +    A  A  +
Sbjct: 325 LLLKTVAETLKSCIRKTDTAARRDKDESGSMIARLGGDEFTVLLSDIKSPENSAIIAQRI 384

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +I    ++  +E++VT SIG + + +   T   +LKNA+ AMYHAK RG N+ + +  
Sbjct: 385 LDAIPEAYSIEGKEVSVTTSIGISVFPADGSTPETLLKNADSAMYHAKDRGKNNYQFYME 444

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +    +R  ++ DL  +    EL L Y P IR  D +IVG EALI+W HP  G I   
Sbjct: 445 SLNRAAIERFSMERDLKKSFARDELVLYYQPQIRFADRKIVGAEALIRWIHPHKGMIPPD 504

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  ++  IN ++L+  +R    W        I + +N++   L    + + ++
Sbjct: 505 KFIPLAEETGLVIDINKWVLKTASRQNDEWTRAGLN-SIRVAMNLSGYKLATQNIIQDIK 563

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +    +   +++L  +E+++M + + +  +  ++R++ IS+ LDDFGT  S LSYL  
Sbjct: 564 EALKTVKFDSKKLELEITENILMQDDDETMQIFQQIREMNISIALDDFGTGYSSLSYLTS 623

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P +T+K + S + GS        I+++II M  ++  TIIA+ I  +     L R GCD
Sbjct: 624 FPVNTIKIDRSFIMGSALQVDNRVIIKAIIAMGHSLGKTIIAEGIETKEQFDLLKRYGCD 683

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q  +++ P+  +   KLL
Sbjct: 684 EAQGYYLSPPIPADEFAKLL 703


>gi|78355597|ref|YP_387046.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218002|gb|ABB37351.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 595

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 140/558 (25%), Positives = 273/558 (48%), Gaps = 8/558 (1%)

Query: 402 SDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
              +   + +  S D  +W  D        +P  A+I G     ++         +  +D
Sbjct: 29  EKEQLFRVLLEYSADCEIW-IDACGVVRFVSPSFASITGYTPECLYRNPDYLAAIMVQSD 87

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              FR   +  +  R G    E R+R A  +  W++   R +++  G          D+T
Sbjct: 88  LPAFRAQ-ERILAERGGSFDVEVRIRTASGRECWVLCICRSITDDEGRPQGRRLTCRDVT 146

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++     +   A  D LTG+PNR  FL++L   ++      +   +V++ID+D++K+IN
Sbjct: 147 RRRLLAMQLQHQAGHDPLTGLPNRSLFLEKLDARVNGGRAARDGGASVVMIDVDRFKQIN 206

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DVLG   GD VL  +  R+  +L   D L RL G+ F ++L     + ++      +++ 
Sbjct: 207 DVLGHEAGDGVLRVVADRLRGILGGNDALCRLGGDEFCLLLAGGGRAEEVLARVQQIQQR 266

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           +   ++   R + +T S+G A+    +    +M++N  +A+ HAK  GG  +E F   + 
Sbjct: 267 LMDSVDTGGRRLHLTVSVGVATHRPGQNAPEDMMRNGGIALQHAKRAGGGGLEVFSDWML 326

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +   ++ +L  A++++  +L + P++ L     V +EAL +WDHP+ G +S ++F+
Sbjct: 327 ESALNHARLEMELHHALKDNAFHLEFQPLVDLHSGRPVRVEALARWDHPQRGAVSPADFI 386

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQAL 817
            + EE   I  +  ++LE        W+ +      + + +N++++ L    L + + A+
Sbjct: 387 PVLEETGQILRLGSWVLENACMAAARWQRRHPELRSVGVSVNLSARQLAQPALVDQVAAV 446

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S++   P+ +KL  +E+++M NPE S L+L RL+ +G+ L +DDFGT  S L+YL   P
Sbjct: 447 LSRSGLEPASLKLEVTETMLMDNPELSNLVLRRLKDLGVFLAIDDFGTGYSSLAYLQSFP 506

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S + G      +  I++++  +A ++   ++A+ +  +     L  +GC+Y 
Sbjct: 507 IDTLKIDKSFVMGMTSDPGKFNIVKAVTALAHSLGLDVVAEGVEEQEQRIMLHAVGCEYA 566

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    A P+    +   L
Sbjct: 567 QGFLFARPVPEKDLAAQL 584


>gi|297538407|ref|YP_003674176.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297257754|gb|ADI29599.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 933

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 159/675 (23%), Positives = 283/675 (41%), Gaps = 28/675 (4%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           +             +A      I       I+   +    R +++ P      +    + 
Sbjct: 269 VVVAYPLSEARAIGLAHSWFIIITAVVLGTILLVIILWQLRRLVVNPIGGDPALAIDVVK 328

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVL 412
                 L+ND        GL      +   V+            +    ER  L      
Sbjct: 329 RIAAGDLEND--------GLEAKPNTLMSNVLNMRQKLREGIAALRESSERMVLSASVFE 380

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D +   D+  + +   P    I G +  +  G     + ++  ND   F  I     
Sbjct: 381 HAHDGILITDVDLNILNVNPAFCKITGYSREAALGTHPKNIGFVD-NDPQFFEKIQQE-- 437

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G  + E +      + +   I I  + +    I  Y+ + +DITE+K++ + I   
Sbjct: 438 SEYAGEWRGEAKNLNNKGESYDAWIDIFAVRDDAQKITNYVCLFSDITERKQAADEIEHL 497

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D+LT + NR+  +DRL      S         ++ +D+D +K +ND LG AVGD +L
Sbjct: 498 AFYDSLTHLANRRMLIDRLKRAFFSSKRTGK-DGALLFLDLDHFKTLNDSLGHAVGDLLL 556

Query: 593 VSLTRRIGELLKFPDILAR---LSGNRFGIILISENN-----SLKIADFAIAMRKSIAMP 644
             +  R+ E L+  D +AR   L G+ F ++L   ++     + +       +  ++  P
Sbjct: 557 QQVASRLTECLRGGDTVARVARLGGDEFVVMLEDLSSHPIEAAAQAEAVGQKILATLNQP 616

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L   E   T SIG A +        +++K+A++AMY AK  G N +  F      +  
Sbjct: 617 YQLATHEYHSTVSIGVALFGDHVDAQDDLVKHADIAMYQAKRAGRNTMRFFDPLMQEAID 676

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++ +L  A++  +  L Y   +       +G EALI+W HP+ G I    F+ +AE
Sbjct: 677 TRADLERELRKALDRQQFQLYYQIQVD-QLNRPLGAEALIRWIHPERGMIPPFNFISLAE 735

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++L+     I +W+       + I IN+++K    N     +QA + +  
Sbjct: 736 ETGLILPIGEWVLDTACAQIKAWQTNELTRDLTISINVSAKQFYQNNFVNQVQAAVYRHG 795

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +PS +KL  +ES+++ N E + + +  L++IGI  +LDDFGT  S L YL  +P   +K
Sbjct: 796 INPSLLKLELTESMLLENIEDTIVTMTALKEIGIRFSLDDFGTGYSSLQYLKRLPLTQLK 855

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +          AI+R+II MAK++E  +IA+ +      + L ++ C   Q    
Sbjct: 856 IDQSFVRDIVCDSSDKAIVRTIIAMAKSMELEVIAEGVETRDQQELLLKIHCKQFQGYLF 915

Query: 941 ASPLGFNSILKLLKE 955
             P+  + +   LK 
Sbjct: 916 GKPITIDELDASLKA 930


>gi|320107292|ref|YP_004182882.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Terriglobus
           saanensis SP1PR4]
 gi|319925813|gb|ADV82888.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 695

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 140/571 (24%), Positives = 264/571 (46%), Gaps = 7/571 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +++ +      + +F++ ER  + +    D V   D   +          + G +  
Sbjct: 118 LRALRYAVERKAMEESLFTEKERAQVTLNCIADGVVCTDSSGNITFLNVVAERMTGWSLE 177

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPM 502
              G   + +  I          + +       G        ++  D     +   I P+
Sbjct: 178 EASGRPMSEVYRIFDATTGIATNLANPLAFGNDGIYDKPNSALQRRDGIMTPIENSISPI 237

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G     + ++ D++  ++    ++ +A  D LTG+PNR    DR++  + L+    
Sbjct: 238 LDRLGCTTGAVMVSRDVSAARRMAIEMIHSAEHDFLTGLPNRMLLHDRVSQAIALAIRQQ 297

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           + +  ++ ID+D +K IND LG   GD +L SL  R+   ++  D ++R  G+ F ++L 
Sbjct: 298 H-KVALLFIDVDGFKHINDSLGHPAGDKLLQSLAHRLVGCVRSSDTVSRQGGDEFVVLLS 356

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S   +   A  A  +  +IA P  +  R++ VTASIG + +      +  ++KNA+ AMY
Sbjct: 357 SVRLAEDTAVAAKKLLAAIADPHLVDRRDLHVTASIGVSVYPDDGTDAETLIKNADTAMY 416

Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G    + F+  ++    +R   +E L  A++  E ++ Y P + L   +I+G EA
Sbjct: 417 QAKAHGRQGYQFFKAVMNVKAVERQSTEESLRSALKRQEFHVHYQPRVDLRTGQIIGAEA 476

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ GNI   +F+ IAE+  +I  I  ++L         W  +   PPI I +NI
Sbjct: 477 LLRWSHPERGNIPPDQFIPIAEDCGLILPIGEWILREACAQTQKWLQEGL-PPITIAVNI 535

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +     + +    + A++ +T   P  ++L  +ESV+M + E + ++L  LR  GI +++
Sbjct: 536 SGVQFGNEDFLADVFAILEETGLDPRHLELELTESVLMKHAESTEVILKTLRSKGIQVSV 595

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL     D +K + S +     + +  AI+ +II M +++   ++A+ +
Sbjct: 596 DDFGTGYSSLSYLSKFSLDALKIDQSFVRRIISSPEDTAIVTAIISMGRSLSLQVVAEGV 655

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               ++  L    CD  Q      P    ++
Sbjct: 656 ETLEELAFLQAHQCDEAQGYFFGRPSPPKNL 686


>gi|254513869|ref|ZP_05125930.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium
           NOR5-3]
 gi|219676112|gb|EED32477.1| ggef/eal/pas/pac-domain containing protein [gamma proteobacterium
           NOR5-3]
          Length = 810

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 138/567 (24%), Positives = 255/567 (44%), Gaps = 18/567 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL- 453
              QG+F      +     SG+ +   D            + I G +     G   + L 
Sbjct: 250 AAKQGLFQA----AAVFKNSGEGILISDEKGLIRDVNAAFSQITGYSRDEAIGQATSLLR 305

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H  D + ++ +  +      G  + E   R         ++ I  +   +G    ++
Sbjct: 306 SGRH--DAEFYKKMWHALKE--TGTWRGEIWNRRKSGAVFPELLTISKI---DGQNSGFV 358

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  DIT+ K++ E +   A  D LT +PNR    +RL   +  +      R  V  +DI
Sbjct: 359 AIFTDITQLKETEEQLQKLAHYDPLTELPNRYLINERLQQSIRRAQRRSE-RLAVFFLDI 417

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IND LG   GD +L     R+ ELL+  D + R+ G+ F ++L   N+     + 
Sbjct: 418 DSFKNINDSLGHLAGDKLLAMTANRLRELLRDDDTVGRIGGDEFLMLLEDINSPDVATNI 477

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  ++  P  L  R ++V+AS+G + +     T+  ++ NA+ AMY AK +G N   
Sbjct: 478 AEKIIGALRKPTILEGRSVSVSASVGISIYPDDGQTAETLMSNADAAMYSAKEQGRNTFR 537

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  +        V+I   L  A   +E  L + P I ++   ++GLE L++W HP  G 
Sbjct: 538 FYSENLTRAAFQNVLIDSALREAKSRNEFRLAFQPQIDIVTNSLLGLEVLLRWHHPTLGT 597

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S ++F+  AE   +I+ I  ++LE+       W  +   P   + +N+++      +  
Sbjct: 598 VSPAQFIPQAERTGLIRDIGQWVLEQACLQGNKWLAEGL-PFGRLAVNVSAPQFRAEDFV 656

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + ++ ++    + P+R++L  +ESV++ + E+    +  LR +GI   +DDFGT  S LS
Sbjct: 657 DQVRQVLEYANFPPNRLELELTESVLVQDTEQLIGNMDELRAMGIQFAIDDFGTGYSSLS 716

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I  +++ + + +   +IA+ I  E   + L  
Sbjct: 717 YLKKMPIDRLKLDKSFVDNISTDDNDRIIAEAVVALGQAMGLEVIAEGIEYEEQARALRD 776

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GC   Q      P+  + I  +L++ 
Sbjct: 777 IGCTQFQGFLYGMPMYTSRIEGVLRKE 803



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I  D           LG     + G   N+L  +H  DR      + +     +    +E
Sbjct: 156 IEGDIKLANSAWELALGYTPEELIGK--NFLELVHEEDRAVTVKEMQNLSKGLKTLY-FE 212

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R R  +  +  +             I+  +G   DI+++  + +G+   A
Sbjct: 213 NRYRHKNGSYRVIAWSAAA--ADQDSIICAVG--RDISKENAAKQGLFQAA 259



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 1/117 (0%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +G   W W+        + D   +L +    +   +   L  +   D   F   +   + 
Sbjct: 24  AGISTWRWEAHSGEFQLSDDGIRMLQVRDDELPLSLDTILGQVVNEDVAGFEAAMARLIT 83

Query: 474 YRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              G+  + +FR      +  W     R  +NS   +    G+  D+T Q+ + +  
Sbjct: 84  EPEGKAQEVDFRADLDSGEQRWFRAIGRSYANSEQTVTHAAGVLLDVTAQQSAQQYY 140


>gi|70733696|ref|YP_257336.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68347995|gb|AAY95601.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 639

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/594 (25%), Positives = 274/594 (46%), Gaps = 15/594 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS---DGERQSLAV---LGSGDIVWD 420
            Q        ++  ++ F     +L      + +     D ER   A      + + V  
Sbjct: 43  WQLVGGYAWAVVSAVLIFFARARLLRVLGADRWLRHQQKDRERLRQAAAVFDCTREGVLV 102

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     V        I G     + G   +     H +    ++++ DS    +     
Sbjct: 103 SDTQGQIVHVNRAFIEITGYQREEVLGRQPSLFKSGH-HSAQFYQSMFDSL--QKTDEWS 159

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E   R    + +     IR + +  G++  Y+ + +DI+  K S   +   A  D LT 
Sbjct: 160 GEIWNRRKSGEIYPQWQTIRAIRDEQGELTHYVAVFSDISAIKDSEHELAHLAHHDPLTD 219

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  F DR    L  +         +++ID+D +K IND LG  VGD +L ++  R+G
Sbjct: 220 LPNRLLFTDRAEQALASAQIHKRG-CAMLMIDLDHFKMINDSLGHNVGDQLLKAVAERLG 278

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            +      LARL G+ F ++  S    ++ A  A  +   +  P  L E+++ + ASIG 
Sbjct: 279 GMFGPGITLARLGGDEFAVLAESCPQLVQAAALAQRIIDGLKEPFQLGEQQVVINASIGI 338

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENS 718
           + + S  +++S++L+NA+ A++ AK  G N    +        +  ++   +L  A++  
Sbjct: 339 SLFPSDALSASQLLRNADAALFKAKSAGRNGYALYTEELTAHAQQRVEIAFELRRALDQQ 398

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL + Y P+  L    +VG+EAL++W+HP+ G +S +EF+ IAE   MI  I+ +++++ 
Sbjct: 399 ELRVYYQPVHDLKTSRLVGVEALVRWEHPERGLVSPAEFIPIAERTGMIAEIDAWVMQQA 458

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R +  W+    +   FI +N++++    +EL + +  ++ +T   P+ ++L  +ES VM
Sbjct: 459 CRQMCQWQADGVVLS-FIAVNVSTRLFARSELYQQVAQVLHETGLDPAYLELEVTESAVM 517

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            +PE +   + RLR++GI L +DDFGT  S L  L  +P   +K +   + G    E   
Sbjct: 518 DDPEVALEQMHRLRELGIRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPFDEDDA 577

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           AI R II +A+++   + A+ I      + L    CD  Q      P+    ++
Sbjct: 578 AISRVIIALAQSMGMQVHAEGIEQVEQARFLLEHACDLGQGYWFGRPMPAAQLV 631


>gi|89902164|ref|YP_524635.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89346901|gb|ABD71104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1169

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/569 (24%), Positives = 255/569 (44%), Gaps = 18/569 (3%)

Query: 399  GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
                  E   +A     S + +   D     +        I G ++  + G   R     
Sbjct: 606  ERKQAEEALRIAATAFESQEGMTVTDAQGAVLRINRAFTEITGYSADEVVGHNPRLLQSG 665

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             H  D+  +  + +S    R G  Q E   R  + + +  ++ I  +  + G +  Y+G 
Sbjct: 666  RH--DKAFYAAMWESIR--RTGSWQGEIWNRRKNGEAYPELLSITAVKENGGIVTHYVGT 721

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              DIT +K + + I   AF D  TG+PNR+  LDRL   L  SA     +  +++ID+D 
Sbjct: 722  FMDITRRKAAEDEIRNLAFFDLQTGLPNRRLLLDRLQQALAASARHRR-QGALLLIDLDN 780

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKI 630
            +K +ND LG   GD +L  + +R+   +     +ARL G+ F ++L + +      + + 
Sbjct: 781  FKTLNDTLGHDKGDLLLQQVAQRLASCVHEGGTVARLGGDEFVVMLENLSEHLEAAATQA 840

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  +  S+    +L   E   TASIG   ++  + T+ ++LK A+LAMY AK  G N
Sbjct: 841  ETLAKRILASLKQTYSLDGYEYQSTASIGITLFSEQQETTEDLLKRADLAMYQAKAVGRN 900

Query: 691  HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +  F             ++  L  AV + E  L Y   +      + G EAL++W HP+
Sbjct: 901  TLRFFDPEMQAVVTSRAALEAGLRRAVTSDEFLLYYQAQVDGQ-GHLTGCEALLRWQHPE 959

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G ++  EF+ +AE+  +I  +  ++L+     +  W  +  M  + + +N++ +     
Sbjct: 960  RGLVAPGEFIALAEDTGLILPLGRWVLDAACTQLAQWATRPEMAHLTVAVNVSVRQFHQA 1019

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +    +  ++  T  +P R+KL  +ES+++G+ E     +  L++ G+  +LDDFGT  S
Sbjct: 1020 DFVNQVLTVLDSTGTNPQRLKLELTESLLIGDVEDVIAKMSILKEKGVGFSLDDFGTGYS 1079

Query: 869  LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             LSYL  +P D +K +   +          AI R +I +  ++   +IA+ +  E     
Sbjct: 1080 SLSYLKRLPLDQLKIDQGFVRNILIDPNDAAIARMVIALGDSLGLAVIAEGVEIEAQRDF 1139

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R+GC   Q      PL  +     ++ 
Sbjct: 1140 LARLGCHACQGYLFCRPLPLDQFEAFVRR 1168



 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 54/171 (31%), Gaps = 7/171 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDI 423
               ++GG  L+     + +++   +          +     +         D ++   +
Sbjct: 453 WLWTVLGGSALVFAGSAYFLLRLRRSNRMLEALNTQVQRSQNQLQATFDAIPDPLFVLGL 512

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                      A +L   +  + G   +    +         + L      +      +F
Sbjct: 513 DGRYYDCRSSRADLLAAPAEDLIGKTVS--DVLPPEAASICLSALREA-NEKGTSTGKQF 569

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            ++ A  +  + +   R       +  R+I ++ DITE+K++ E +   A 
Sbjct: 570 ELQLAHGRAWFELSVARKSVGQRQEP-RFIVLSRDITERKQAEEALRIAAT 619


>gi|89900840|ref|YP_523311.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89345577|gb|ABD69780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1034

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 158/760 (20%), Positives = 301/760 (39%), Gaps = 29/760 (3%)

Query: 215  SSMLIP--TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
              +       +   +VL  ++    F  +     + +  +W A     L   L + L  Y
Sbjct: 280  ERLYHFKQLASYPVLVLVGLASKDVFAQQ---EDTLQHRVWEAVILSVLLLVLGVLLSWY 336

Query: 273  LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
            +   R H+         +  +        +  ++    +     +    +  F +     
Sbjct: 337  VVIRRRHSTAQRQALVQLQSLTHHVPGVVFQYLLRPDGSSCFPFASAGLHKIFRLSPEAV 396

Query: 333  GYERAVLLIPA----WILIFIWFIGLWMAITKRLDNDII------QPALVGGLVLIVILI 382
              + A L           +         A+T  +D   +         L        +  
Sbjct: 397  AQDAAPLFALMHPDDAAGVAASIQASSRALTPWVDEYRVKFGDGTVRWLSSKAAPQKLDD 456

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            G  +    ++     +         S AV  S   +   D         P    + G   
Sbjct: 457  GSVLWHGFVSDVTAHKQAEESLITLSAAVEQSPVSIVISDPRGLIEYVNPMFEQVSGYRR 516

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G     L   H    D +R +  + +         EF  R  D    W    I P+
Sbjct: 517  AEVMGQNPRILSS-HEKSEDEYREMWATLLAG--DIWHGEFHSRRKDGSLFWEQAAIAPI 573

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             + +G  + Y+ I  DIT++K +   I   AF D LTG+PNR+   DRL  +L +     
Sbjct: 574  FDDHGRPIHYLAIKEDITKRKAAEAEIEHLAFYDLLTGLPNRRLLNDRLQQVLAVGTRSR 633

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 ++ ID+D +K +ND  G   GD +L  + +R+   ++  D +ARL G+ F ++L 
Sbjct: 634  R-HGALLFIDLDNFKNLNDTQGHEQGDVLLQQVAQRLNFCVRECDTVARLGGDDFVVMLQ 692

Query: 623  SENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
              +        +       +  ++  P          +AS+G A + +S+ T  E+LK A
Sbjct: 693  DLSEQQTEAATQAEGVGQKILDALHQPYPFGHFTHHGSASVGVALFNASQDTVEELLKRA 752

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            +LA+Y AK  G N +  F             ++ D+ L ++ ++  L Y P +      +
Sbjct: 753  DLALYQAKDAGRNTLRFFDPDMQAVISARAEMEADMRLGLQENQFLLYYQPQVNHA-GRL 811

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            +G+EAL++W HP  G ++ + F+ +AE+  +I  +  +++E   R +  WR QA+   + 
Sbjct: 812  IGVEALVRWQHPLRGLVAPAHFIPLAEDTGLILPLGQWVMEAACRQLQLWRTQAHTAQLT 871

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I +N+++           + A +++T     R+KL  +ES+++ + +     +  L+  G
Sbjct: 872  IAVNVSALQFHGESFVSDVLATLARTGAPADRLKLELTESLLVKDVDGVIAKMVALKAHG 931

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913
            +  +LDDFGT  S LSYL  +P D +K + S ++   S  K  A++R+ + M + +   +
Sbjct: 932  VGFSLDDFGTGYSSLSYLKRLPLDQIKIDQSFVSDALSNPKDAALVRATVAMGRGLGMMV 991

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            IA+ +  ++    L   GC   Q      P+    +   L
Sbjct: 992  IAEGVETQMQRDFLEGEGCLNFQGYFFGRPVPVAELACFL 1031


>gi|313496581|gb|ADR57947.1| Sensory box protein [Pseudomonas putida BIRD-1]
          Length = 631

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 148/622 (23%), Positives = 281/622 (45%), Gaps = 13/622 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+ ++ + + + +  + L       L   + +   V   VL+  L+ +     +L     
Sbjct: 13  ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSALLIYVSRVRLLNFIGH 72

Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              +   D ER  +A      + + V   D     V        I G     + G   + 
Sbjct: 73  GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSK 132

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
               H      ++ +  +     +G    E   R    + +     I  + +  G++  Y
Sbjct: 133 FKSGHHG-LAFYQEVFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHY 189

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +DI+  K S + +   A  D LTG+PNR  F DR+   L  +  +      ++++D
Sbjct: 190 VAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRVEQALAAAQANKRG-CALLLLD 248

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D ++ IND LG  +GD +L  +  R+GE+L     LARL G+ FG+++ +     +   
Sbjct: 249 LDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGK 308

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + +  P       + ++AS+G + + S  + + ++L+NA+ A+Y AK  G    
Sbjct: 309 LAQCIIERMREPFQFEGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACY 368

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +        +  ++   +L  A+E  EL + + P+  L     VG+E L++W HP+ G
Sbjct: 369 ALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRG 428

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE   +I  I+ ++L++  R ++ W+ Q      F+ +NI+S+    +EL
Sbjct: 429 LVPPGEFIPIAERTGLIAEIDTWVLQQACRQMVQWQAQGRQLT-FVGVNISSRLFGQHEL 487

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  ++  T  +P+ ++L  +ES VM +PE +   L RLR++G++L +DDFGT  S L
Sbjct: 488 YRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSL 547

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P   +K +   + G    E  IAI+R II +A+++   + A+ I        L 
Sbjct: 548 LRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLL 607

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
           +  C   Q      P+    + 
Sbjct: 608 QEECQLGQGYWFGRPVPAEDLR 629


>gi|226311730|ref|YP_002771624.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599]
 gi|226094678|dbj|BAH43120.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599]
          Length = 805

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 152/808 (18%), Positives = 322/808 (39%), Gaps = 47/808 (5%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTI------FYMVNRSSMLIP-TFAMAWVVLGYISIDFG 237
             S+++    +    S +A +  +       Y   R  + +    A++  +  +      
Sbjct: 5   DQSYSMTLFFLSYFISAMASYTALDLGARLHYAKGRGRVFLLCAGAVSMGLGIWAMYFVA 64

Query: 238 FLSKLVNLPSGELLIWRACSEIA--LSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC--- 292
            L+  + +      +    S +   LSS+L +++      ++     G +          
Sbjct: 65  MLALHLPIAVEYDHLIVFFSIVLAVLSSALTLWIVSEQSMSKTRVVKGSVVIGTGIAGMH 124

Query: 293 ---IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
              +A +   +            I +A +       + +          L    +  + +
Sbjct: 125 YTGMAAMMMNAVILYDWLWFTVSIFVAILFSMVALILTFQLRSVDPVEGLWRKIFAGLLM 184

Query: 350 WFIGLWMAITKRLDNDIIQP-----------------ALVGGLVLIVILIGFTVIQHVLA 392
                 M  T       +                    ++G + ++++++    +     
Sbjct: 185 GASITGMHYTGMYATTFVAHEHMTIAVIPYDDSGLIATMIGIVSVLILVVTLASVYVDKQ 244

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +  +    +R       + D V  + I   +    P    +          P+   
Sbjct: 245 FAGKTLRVLESDQRYKSLFEHNYDGVIFYSIDGTQSVMNPAAMRLT----KEQSLPLEKL 300

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                  D +   T   + V         +  +   +     + +   P+   +  I   
Sbjct: 301 KTMCISTDAELISTHFTNAVQGDAR--NCDITLTTREGCQLHLNMTHTPVF-VDQQITGV 357

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
             I  DIT +K+    I   AF D+LTG+PNR+    +L  ++  +   D  +  V+ +D
Sbjct: 358 FMIVRDITNKKEYEAKINYLAFHDSLTGLPNRRFVEQQLDQVIMEAQKTDQ-QVYVLFLD 416

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +ND LG   GD +L   + R+ E +     + RL G+ F +IL        ++ 
Sbjct: 417 LDHFKLVNDSLGHDFGDLLLQEASLRLRECVGKKGTVYRLGGDEFMVILTDVTERE-VSS 475

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + ++I     +   E+ +T SIG + +       S +++NA+ AMY AK +G N  
Sbjct: 476 MANEINETIEQAFFIHGHELYITTSIGISRYPEDGQDRSVLMRNADAAMYAAKDKGKNSF 535

Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +  +  +  +D++ I+ +L  A+   E  L Y P +      IVG+EALI+WDHP+ G
Sbjct: 536 HLYVPNLEQAVNDKMNIQNELNRALARQEFLLHYQPQVSAKSGAIVGVEALIRWDHPERG 595

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   +F+ +AEE  +I  I  ++L    +    W+DQ    P+ + +N++++  L  + 
Sbjct: 596 LLLPDQFISVAEETGLIVPIGEWVLRTACKQNKQWQDQGLK-PLRVAVNLSARQFLKQDF 654

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  ++ +T  +P  ++L  +ES ++ +  R+   L  L+++G+ + +DDFGT  S L
Sbjct: 655 TQMIAEILHQTRLAPEYLELEITESSMI-DVHRATQALKELKQLGVHVAIDDFGTGYSSL 713

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL   P + +K + S +          AI+ +II MA +++  +IA+ +  + ++  L 
Sbjct: 714 YYLKEFPLNRLKIDRSFVRDMIEQPSNQAIVSTIISMAHHLQMHVIAEGVETKEELAFLQ 773

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
              C+ +Q    + PL    +   L+ +
Sbjct: 774 EHLCEEVQGYLFSRPLPSEDVAFYLQAQ 801


>gi|82702267|ref|YP_411833.1| response regulator receiver /GGDEF/PAS/PAC domain-containing
           protein [Nitrosospira multiformis ATCC 25196]
 gi|82410332|gb|ABB74441.1| response regulator receiver (CheY-like) modulated diguanylate
           cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196]
          Length = 756

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/574 (25%), Positives = 277/574 (48%), Gaps = 32/574 (5%)

Query: 415 GDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
             + W WD+         P+   + G   G     +      +H  D +     L     
Sbjct: 177 PQVFWIWDVHDQTFRYINPEWEKMTGQRVGR-GDRLEKIFEAVHPEDMERV---LREAAD 232

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             RG + +++R+   D    W+  R  P+ +S G + R +G+ +DIT++K++ + +L  +
Sbjct: 233 LPRGGVDHDYRLLLPDMSIRWVHSRTFPIKDSAG-VHRIVGVMDDITQRKQADQQLLQVS 291

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR  F + L  ++  S  +  +  +V+ +DID +K IND LG A+GD++L 
Sbjct: 292 RYDALTHLPNRILFYESLRKVIKQSEMNHRI-VSVLFLDIDNFKNINDTLGFALGDELLR 350

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
             + R+ E L+  DI+AR+ G+ FG IL+S ++       A  +R+++  P +L   ++T
Sbjct: 351 EFSLRLLECLRVTDIVARIGGDEFGCILVSADDLGNAGLVASKIREALRQPFDLQGHQVT 410

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711
           VTASIG + +    I +  ++KN + AMY +K  G +    F         +++  +  L
Sbjct: 411 VTASIGISVYPIDSIDADTLVKNGDTAMYQSKTAGRDTYRFFTPEMNIRAIEKLDQENAL 470

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++  E  L Y P + L +  + G+EAL++W  P+ G +   EF+   E+  +I  + 
Sbjct: 471 RKALDREEFVLHYQPKVDLSNGWVTGMEALLRWKRPEHGVVEPLEFIPALEQTGLITRVG 530

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM----------------- 814
            +++E + R I  WR       I + +N++ +    + L + +                 
Sbjct: 531 AWVIESVCRQIAEWRHAGIGE-IPVSVNVSGRQFSRSTLNQDVIRATQANGIQPALLEFE 589

Query: 815 ---QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              +  + +       ++L  +ES +M + +++  +L RL+ +GI +++DDFGT  S L+
Sbjct: 590 LQTERALRENSIDSDLLELELTESSLMMHAKKTVSILQRLKALGIQISIDDFGTGYSSLA 649

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           Y+   P D +K + S +   T      AI  +II MA ++   ++A+ +        L  
Sbjct: 650 YVKRFPIDVLKIDRSFIQEITTNSADAAITTAIIDMAHSLHVRVVAEGVETAEQFDFLKG 709

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            GCD +Q  +++ PL  N I +LL      +K T
Sbjct: 710 RGCDEVQGFYLSPPLPANEISQLLLSGNRRLKPT 743


>gi|118581541|ref|YP_902791.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pelobacter
           propionicus DSM 2379]
 gi|118504251|gb|ABL00734.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter propionicus DSM 2379]
          Length = 754

 Score =  542 bits (1397), Expect = e-151,   Method: Composition-based stats.
 Identities = 141/581 (24%), Positives = 261/581 (44%), Gaps = 22/581 (3%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                 +  +    +     V  S D+++  D           I ++LG +   + G   
Sbjct: 143 RDHVLITSRLQHSEQLHRFLVESSPDLIFTLDNSGCFTFINSRIESLLGFSREELIGSCY 202

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-------RAADNQFHWMIIRIRPMS 503
           +    +   D    +          R     E R+       R  +N    +++    + 
Sbjct: 203 D--TIVLAEDLKTAQHPFTERRRGNRATTNLEIRLKCTPSHYRNFENHHIVVMMSSTGIY 260

Query: 504 NSNGD-------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             + +            G+A DIT++K + E I   AF D+LT +PN++ F DRL   + 
Sbjct: 261 GEHDNDFPLARCFSGTYGVARDITDRKIAEETIAFQAFHDHLTHLPNQRLFKDRLEMAIT 320

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            S     +   VM ID+D++K +ND  G A GD++L ++  R+   ++  D LAR  G+ 
Sbjct: 321 HSKRHGGM-VGVMFIDLDRFKIVNDTHGHAAGDELLKNVAHRLRHCIRAVDTLARKGGDE 379

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++L     +   A  A  +   + +P ++  ++  V+ASIG A       +   +LK+
Sbjct: 380 FTVLLPDLMRAEDAALIAEKIMHELGIPFSVAGQKFHVSASIGIAIVPRDGESIDTLLKS 439

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY  K  G N    F             ++ +L  A+ NSE  L Y P + +    
Sbjct: 440 ADIAMYRVKASGKNGYRFFTPDMNICYTKRISLENELRQAIPNSEFELFYQPQVSINGAS 499

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+GLEALI+W HP  G ++  +F+ +AEE  MI  I  ++L    R +  WR       +
Sbjct: 500 IIGLEALIRWRHPTHGLLNPGDFIELAEETGMIGTITDWVLAEACRQLAHWRSM-GFSDL 558

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++ K+   +++ E +   +S     P  +++  +E +++ +       +  LR+ 
Sbjct: 559 RIAVNVSPKEFERDDMVEQLSRFMSTFQLPPDSLEVEITEKILLRDTPSVINKMKTLRER 618

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETT 912
           GI +++DDFGT  S L+YL   P  T+K + S +   +E+     I+++II +A      
Sbjct: 619 GIRISIDDFGTCYSSLNYLRQFPISTIKIDQSFVRDLSEEHRISPIIQAIIGIANGFGLH 678

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++A+ +     ++ L  +GC+ +Q    + P     I ++L
Sbjct: 679 LLAEGVETHCQMQTLHALGCNEMQGYLFSRPAPAEQIEQML 719


>gi|332527012|ref|ZP_08403097.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111447|gb|EGJ11430.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 687

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 146/574 (25%), Positives = 264/574 (45%), Gaps = 14/574 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448
           V       +   +     +     S + +   D+    V        I G A   + G  
Sbjct: 117 VQRDVTARRDAMNKLSLAARVFEQSNEALAIADVDGRFVAVNDAFTRITGYAEHEVIGQN 176

Query: 449 IRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            R     +H +D    F   L +     RGR + E   R  D   +   + +  + +  G
Sbjct: 177 PRLLKSGLHDDDFYHRFWQELRT-----RGRWEGEIWNRRKDGTVYPEWLSVGRVVDEAG 231

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             L Y+   +DIT +K + E +   A+ D LTG+PNR    +R +  L ++         
Sbjct: 232 RTLNYVASFSDITARKHAEENVRRLAYYDPLTGLPNRALLQERASQALQIAVRTGE-PVA 290

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M +D+D +K +ND LG  +GD +LV+L +R+   L+  D LAR+ G+ F ++L S  ++
Sbjct: 291 LMFLDLDHFKNVNDTLGHPIGDRLLVALAQRMRPALRDQDTLARVGGDEFVLVLPS-TDA 349

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +  A  + + +  P+ L   ++TVT SIG A + +       +   A+ AMY AK  
Sbjct: 350 TGASYVAQKLLQIVQEPVQLDGHDLTVTPSIGVAVFPTDAADYDTLFAFADAAMYRAKMS 409

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      +           +  +  L  A+E  E+ L Y P  +  D  IVG+EAL++W 
Sbjct: 410 GRATFSFYTAEMQAQMARTLRVENALRRALERDEMQLHYQPQCQAADGRIVGVEALLRWQ 469

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G I  +EF+ +AE    I  I  ++L+   R + +W+  A +PP+ + +N+++  L
Sbjct: 470 HPELGWIGPAEFVPLAETNGQIAVIGRWVLDTALRQLRAWQ-LAGLPPLRMAVNLSAVQL 528

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L E +  L+ +    P+ ++L  +E++   +PE S   + RLR +G+ + LDDFG 
Sbjct: 529 RQPGLAELVGELLRRHEVDPAWLELELTETMAWDDPEGSARQIARLRAMGLRIALDDFGA 588

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             +  S+L      T+K + SL+ G      + +++ +I+ +A+ +    +A+ +     
Sbjct: 589 GYTSFSHLSLFQAGTLKIDRSLVAGIERGSHQASVVAAIVNLARTLRMHTVAEGVETPGQ 648

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            + L   GC+  Q      P+   +   L++ER 
Sbjct: 649 REALLAAGCESAQGWLYGRPMPAEAFEALIRERQ 682



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 65/221 (29%), Gaps = 32/221 (14%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               +    +    A+      V   D  R           + G ++  M G     L  
Sbjct: 1   MHDAVLRLLKLHQNALDAISQGVLITDANRRTTYVNAAFVELTGYSAEEMIGSSCALLQG 60

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                  +    + + +  R      E      D    W  ++I P+   +G + +++G+
Sbjct: 61  --PGTSADTVQAMRAALD-RGEPFHAELLNYRKDGTPFWNELKIVPVHADDGTLTQFVGV 117

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID- 574
             D+T ++ ++  +   A           + F                    + + D+D 
Sbjct: 118 QRDVTARRDAMNKLSLAA-----------RVFEQ--------------SNEALAIADVDG 152

Query: 575 KYKKINDVLGIAVG---DDVLVSLTRRIGELLKFPDILARL 612
           ++  +ND      G    +V+    R +   L   D   R 
Sbjct: 153 RFVAVNDAFTRITGYAEHEVIGQNPRLLKSGLHDDDFYHRF 193


>gi|260219535|emb|CBA26380.1| Uncharacterized signaling protein PA1727 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 649

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 137/620 (22%), Positives = 266/620 (42%), Gaps = 22/620 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI------QHVLATGYFSQGIFSDG 404
            +   M  + R         L      + +L G   +      + +              
Sbjct: 25  SLIAGMLESGRAPEAREMLLLHRTGREVPVLTGHAAVTGHRNDKELFRFDIDLSERKQTE 84

Query: 405 ERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
               +A     + + +   D  R  +        I G     + G           +  +
Sbjct: 85  AELRVAATAFEAQEGMMVTDAHRRILRVNEAFTRISGYEDVEVIGNTPTMFSSGWHD--N 142

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L++ +    G  Q E   R  + + H   + I  +++  G +  ++    DIT++
Sbjct: 143 AFYEELNASLA-STGTWQGEMWNRRKNGEIHPQWLHITAVNDETGAVSHFVATVTDITQR 201

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K + + I   AF D LTG+PNR+  +DRL   L  SA   +    ++ ID+D +K +ND 
Sbjct: 202 KAAEDQIRQLAFYDPLTGLPNRRMLIDRLRHALASSARSAHC-GALLFIDLDHFKNLNDT 260

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAM 637
           LG   GD +L  + +R+ + ++  D +ARL G+ + ++L   +    IA          +
Sbjct: 261 LGHDKGDLLLQQVAQRLLDTVREEDTVARLGGDEYVVMLEGLDEFHDIAASQATAVGEKI 320

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P  L   E   T S+G   +   ++   ++LK A+LAMY AK  G N +  +  
Sbjct: 321 IAKLNWPYQLAGHEFHSTPSMGLTLFNGHEVEVEDLLKQADLAMYQAKGAGRNGLRFYDP 380

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 + R  ++ D+   +   +  L + P +      ++G EAL++W+HP  G +S +
Sbjct: 381 QMQAAVTKRAELEADIRQGILFGQFVLFFQPQVD-KSGCVMGAEALLRWNHPTRGMVSPA 439

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+   I  +  ++LE     +++W        + + +N++S+     +  + + 
Sbjct: 440 EFIPVAEDSGQILTLGSWILEAACAQLVAWAADPETRALTLAVNVSSRQFRQQDFAQHIL 499

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++  T  +P  +KL  +ES++  N +   + +  LR  G+  +LDDFGT  S LSYL  
Sbjct: 500 DMLDYTGANPHCLKLELTESLLADNLDDVIVKMSALRARGVGFSLDDFGTGYSSLSYLKR 559

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + S +    +     AI+++I+ + K +   +IA+ +        L   GC+
Sbjct: 560 LPLDQLKIDQSFVRDVLTDPNDAAIVQTILALGKTLGLKVIAEGVETGEQRDFLVANGCN 619

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q    + P+  +  L+ +
Sbjct: 620 SYQGYLYSRPVPADEFLRYV 639


>gi|78356398|ref|YP_387847.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218803|gb|ABB38152.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 904

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/617 (24%), Positives = 278/617 (45%), Gaps = 14/617 (2%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-L 409
            +    A  + ++ D+       GL+ +   + F ++         ++ +    E    L
Sbjct: 289 LVVGLAAAVQDINADMYALNRQQGLLAVTAFLFFALMALGFLREQRTRALRRSAELYRQL 348

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A       +W  D     +  +P    I G  +             +H  D   FR  + 
Sbjct: 349 ADTAYDIELW-HDAEGKLLYVSPSCERITGYPAADFMADAGLLERVVHREDLPAFRMHMS 407

Query: 470 S--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +   +         E+R+     +  W+ +  R +  S+G          D+TE K   +
Sbjct: 408 APGMLEGE----SLEYRLLHRTGKVRWVSVVAREIWTSDGICQGVRSSVRDVTESKLMEK 463

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   +  D LTG+ NR   L R+   +  +A    +   V+ +DID++K IND LG   
Sbjct: 464 ELDYKSQHDELTGVANRSLCLARIRKAMVRTAPRPEVGFAVLFLDIDRFKIINDSLGHEQ 523

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +  R+   ++  D +AR  G+ F I+L       +    A  ++K    P+ L
Sbjct: 524 GDMVLAEMAERLVASVRPCDTVARFGGDEFVIVLEELPGPREAVRMARLIKKRFKEPLLL 583

Query: 648 LEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
              E+ +T SIG    +    + +   ++NA +AMY AK  G + ++ FR       +  
Sbjct: 584 EGHEMRITCSIGMIFEYGGDSVGAQAAVRNANIAMYRAKAAGRDKLKVFRPKMLAAAASV 643

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++ D+   ++  E ++ Y P+ R  D  + G EALI+W HP+ G I    F+ +AEE 
Sbjct: 644 MTLENDMRSGLQRDEFFMEYQPVQRSDDGTLTGFEALIRWRHPEKGIIGPDHFIPLAEES 703

Query: 765 CMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLY 823
            +I  I L  L +   ++  W  +      +F+ +N++++     +L   +  ++  +  
Sbjct: 704 GLIVDIGLSALRKSCCEMARWCRRYPGCEELFLAVNLSARQFSQPDLVTCVSGILQDSGL 763

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P ++KL  +ES +M N E +  ++ RL++IG+ L +DDFGT  S L+YL  +P DT+K 
Sbjct: 764 DPRQLKLEITESTIMSNAETALAMMHRLKQIGVQLAIDDFGTGYSSLAYLQKLPVDTLKV 823

Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   ++   E+   + I+RSII +A +++   +A+ +     ++ L  +GC Y+Q  +  
Sbjct: 824 DRMFVSAMEEQAGCLEIVRSIIVLANSLQLNTVAEGVENSRQLEMLRNLGCSYVQGFYFH 883

Query: 942 SPLGFNSILKLLKERFP 958
            PL   +   LL  R P
Sbjct: 884 KPLPVAAAELLLNGREP 900


>gi|237807254|ref|YP_002891694.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Tolumonas auensis DSM 9187]
 gi|237499515|gb|ACQ92108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Tolumonas auensis DSM 9187]
          Length = 1101

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 141/559 (25%), Positives = 258/559 (46%), Gaps = 12/559 (2%)

Query: 404  GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462
              + +     + + +   D     +   P  A + G +   + G     +    H     
Sbjct: 543  LRQSATVFDNTREGIMITDKNAQIIRVNPAFAELFGFSQHELQGKTPVIFKSGKH---TH 599

Query: 463  NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             F   +   +       + E   R  DN    +I  I  + N    +  Y+ + +DI++ 
Sbjct: 600  EFYQHIRDSL-NTSAFWRGEIWNRRKDNHIIPLICSISAVRNDKQQLTHYVSVYSDISKL 658

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            K S   +   A  D LT +PNR      L+  +DL+  + + R  ++++D+D++K +ND 
Sbjct: 659  KASEAKLAHLAHHDPLTQLPNRTLLTINLSHAIDLAVRNHH-RIALLMLDLDRFKDVNDS 717

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G  +GD +L  + RR+   ++  D + RL G+ F +++        +  FA  + + + 
Sbjct: 718  FGHQIGDALLQEVARRLRRRVRISDTICRLGGDEFTVLIEGNPALHDVEHFAEDILQLLK 777

Query: 643  MPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
             P +L   RE+ + ASIG + +     T  E+L+ A+ AMY AK  G +    F      
Sbjct: 778  DPFSLPNGREVIIGASIGISLYPEHGQTPKELLQQADAAMYRAKAHGRSCFRYFSDELTR 837

Query: 700  FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                R+ ++  L  A+  +EL L + P I +    I+G EAL++W  P  G IS ++F+ 
Sbjct: 838  AAEQRLDLEVRLQRALRLNELCLYFQPQIDISSNRIIGAEALVRWQDPAHGLISPAQFIP 897

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            +AEE  +IK +  ++L    R    W+ Q  +P I + +NI+     ++ + E +   + 
Sbjct: 898  VAEETGLIKQLGEWVLLEACRQGKEWQ-QKGLPAINLAVNISPVQFRNSNILESVFNALK 956

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +T Y  S ++L  +ES +M +   +  +L  LRK GI L +DDFGT  S L+YL   P D
Sbjct: 957  QTGYPASLLELELTESALMTHENEAVEILSALRKYGIRLAIDDFGTGYSSLAYLKRFPLD 1016

Query: 880  TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             +K + S +         + I  +I+ MA  +   ++A+ +  E  +  L   GCD  Q 
Sbjct: 1017 VLKIDKSFVDDIPHKKDDMEIAAAIVAMAHTLRLKVLAEGVETEEQLTFLKEQGCDCYQG 1076

Query: 938  SHVASPLGFNSILKLLKER 956
              ++ P+  +   +LL+ +
Sbjct: 1077 YLMSPPVPADQFEQLLRAQ 1095



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 5/205 (2%)

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
           +  Y         W ++         A    L   I       GL++I ++      Q  
Sbjct: 348 VASYIPVRY--SGWHILVQQDRAEIYAPLHNLVYWITLVVFFAGLLVIFVVSLLWRQQQY 405

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPI 449
                  +                   +          +     ++ +LG +   M    
Sbjct: 406 TNQLELQRQTSEKDRLLKHFFELPLFGMAITHGQTGHWIRFNHQLSDLLGYSHSEMAEH- 464

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L       ++     +             E ++R  D Q  ++ +  R +  ++ +I
Sbjct: 465 -TLLSLTANEYQEADIAAMYQMTQDLCDGYLCEKQLRRKDGQLIYVNVDTRCVRTADRNI 523

Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534
              I +  DI+ QK++   +  +A 
Sbjct: 524 AFIISVIEDISSQKENEAILRQSAT 548


>gi|77918534|ref|YP_356349.1| sensory box protein [Pelobacter carbinolicus DSM 2380]
 gi|77544617|gb|ABA88179.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pelobacter carbinolicus DSM 2380]
          Length = 1063

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 146/567 (25%), Positives = 256/567 (45%), Gaps = 17/567 (2%)

Query: 399  GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454
             I    ++   A   +  S   +   D+             + G A    + G       
Sbjct: 496  EIKKTQQQFHQAKWSIDASLTPMLMADLQGRLTYANQAALDLWGYAGEEEVLGKNIVEFQ 555

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                 D    R I++      RG  + E R +  +     + ++ + + + NG  L  + 
Sbjct: 556  ----EDPQRTRIIMEILKA--RGVWRGEGRGKQKNGNGFDVELQAQVVKDQNGGPLSILA 609

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             A DIT+++K+   I   A+ D+LTG+PNR    D +   L  +   +     V+++D+D
Sbjct: 610  SAIDITDKRKTELQIKKLAYFDSLTGLPNRTLLKDHMELALGQARRLNKF-VAVLLLDLD 668

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K IND LG A GD ++ S+  R+    +  D LAR  G+ F ++L   ++        
Sbjct: 669  NFKHINDTLGHATGDLLIRSVAERLRTECRTCDTLARWGGDEFVLLLTDLDDIQNTTSAT 728

Query: 635  IAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                  +   P    E +I  TASIG A +         +LK A+ AMY AK  G N   
Sbjct: 729  EKFMALLTERPFATSECDINTTASIGIALYPQDGQDPETLLKRADTAMYEAKKNGRNGYH 788

Query: 694  SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F +        R  ++ +L  A++  E+ LVY P I L    I G+EAL++W  P+ G 
Sbjct: 789  FFSLQLAEQAERRHRMEINLRSALKEGEMQLVYQPQIDLGKVRITGMEALLRWQSPEEGT 848

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            IS + F+ +AEE  +I  +  ++L++  R    W+      P+ + +N+++K     +L 
Sbjct: 849  ISPARFIPLAEETGLIYPLGEWVLQQACRQGAIWQKTEA-SPLCVAVNLSAKQFHQPDLA 907

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            + ++ ++ +T  SP  ++L  +ESV + N E +   L  L+K+G+  ++DDFGT  S LS
Sbjct: 908  KNIKKILRETGLSPHLLELEITESVFLENMEAAIEALTELKKLGVQFSIDDFGTGYSSLS 967

Query: 872  YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P D +K     +          AI+++ I MAK++   +IA+ +     +  L  
Sbjct: 968  YLKKLPIDRIKIAQEFVRDIDTDDGDKAIIKATIAMAKSLGMKLIAEGVENHQQLAFLLL 1027

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKER 956
             GC  +Q  + A P+    +   +   
Sbjct: 1028 HGCHAMQGYYFAKPMPAQEVPSFIHSE 1054



 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 49/163 (30%), Gaps = 6/163 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            +   +  + + +  T+   ++      Q +          +    D +   D   + + 
Sbjct: 349 TIALLIAGVFLCLSCTLTLMIMRYKKTLQALRQSEGTLKAMLESIADPIHMVDRDLNILW 408

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                  + G    ++ G       +      D     + +F        +  F     +
Sbjct: 409 ANDIAKQLFG---KNLVGQKCYAALHRSPTPCDPMCHAIKAFSDGHAHSSENLF--FDIN 463

Query: 490 NQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILC 531
           ++    ++      ++S G     + I+ D+TE KK+ +    
Sbjct: 464 DEERCFLVTANVASTDSQGQPSAVLTISRDVTEIKKTQQQFHQ 506


>gi|330812147|ref|YP_004356609.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327380255|gb|AEA71605.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1239

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 158/574 (27%), Positives = 270/574 (47%), Gaps = 12/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +  +         +    ++ +     + + V   D  +           I G +     
Sbjct: 656  MLTIARDITERHLMQEKLQQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYSETEAL 715

Query: 447  G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   R     +H  D   +  +         G  Q E   R  + + +   + I  + N 
Sbjct: 716  GHTPRLLASGLH--DSAFYAAMWHQLTAE--GHWQGEISNRRKNGELYPSWLTISAVRNR 771

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            +  I  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL   L+    +   +
Sbjct: 772  DRQITHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLAALNGQQENGG-Q 830

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F I+L    
Sbjct: 831  GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLREQLRDIDTVARLGGDEFIILLPGLQ 890

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                    A  +      P    E E  ++ASIG + +       + ++KNA+ AMY +K
Sbjct: 891  QPSDAEHIAQKLLNCFGAPFQAGEHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSK 950

Query: 686  HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G N VES+     +  S+RV ++ +L  A+E +EL L + P I L+D ++VG EALI+
Sbjct: 951  AKGRNRVESYTRDLTAQASERVALEHELRRAIERNELSLSFQPKISLIDNQLVGAEALIR 1010

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP +G++    F+ +AEE  MI  I  ++LER  R +  W D  +     + +N+A  
Sbjct: 1011 WTHPTFGDVPPEHFIPLAEENGMILQIGDWVLERACRQLCEWNDAYDSLG-PLSVNLAGA 1069

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L    L   ++ L+ +    P  ++L  +E+ +M   E +  +L +L+K+G+ L +DDF
Sbjct: 1070 QLRQPNLLGRIEQLLRENQLEPGLLQLEITENFIMSQAEEALTVLHQLKKLGVQLAIDDF 1129

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P D +K + S + G        AI+R+II + ++++ T+IA+ +   
Sbjct: 1130 GTGYSSLSYLKRLPLDILKIDQSFVRGLPDDPHDAAIVRAIIALGRSMQFTVIAEGVETL 1189

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
               + LT  GC+ IQ   V+ PL  +      L+
Sbjct: 1190 AQQQFLTEEGCEQIQGYIVSLPLCADEFAATFLR 1223



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 7/157 (4%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTT 431
            G++ +VI I   +   +       Q + S        V     I W+  +        +
Sbjct: 271 VGILAVVIRINRRLSSEIARRVELEQELRSSEYHYRGLVESLSAIAWEARVSDFTYSYVS 330

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADN 490
           P    +LG            W   IH  D    +T  D   +  R   +  ++RV  AD 
Sbjct: 331 PHAEDLLGYPLSHWL-IPGFWRNIIHPADLIRAQTYCDHEVLAGRDHCI--DYRVITADG 387

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  W+   +  +   +G      G+  DI+E K++ E
Sbjct: 388 RCLWVRDIVSLI--EHGHEPVMRGLMIDISEAKRTEE 422



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 25/210 (11%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W +  +    L       + N  +      G V   ++               V++ 
Sbjct: 478 LNIWGIQGVGPALLQRLQAGSIRNLEMPFRRSNGQVFTGLISAEPFDLDTTPALVVVVRD 537

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGL----ASGS 444
           +       Q + +  E+ + A   S D +          +      + I G     +   
Sbjct: 538 ISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLIEVNEGFSRITGFNSALSVDR 597

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
               +  W+         N R  +   +        +   +R  D Q     +  RP+  
Sbjct: 598 STLDLGIWVNL-------NERKQMLDLLKRDGFVRDFSCHIRRNDGQIRLCEVSSRPL-- 648

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534
             G+    + IA DITE+    E +   A 
Sbjct: 649 PIGNEDCMLTIARDITERHLMQEKLQQAAT 678


>gi|91774883|ref|YP_544639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Methylobacillus flagellatus KT]
 gi|91708870|gb|ABE48798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Methylobacillus flagellatus KT]
          Length = 858

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/573 (26%), Positives = 264/573 (46%), Gaps = 16/573 (2%)

Query: 398 QGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           Q +     R  LA      S + +   +   + +   P +  + G +   + G   ++L 
Sbjct: 295 QQLRRRDARMRLATSVFASSSEGILIANPNDEVIGINPAVTALTGYSVQELLGRPVSFLA 354

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                          SF    +G  Q E  ++        + + I  ++  +G +  YI 
Sbjct: 355 ---PEQTVAESRRQASFSISEKGVWQGEALIKHKQGYTFPVALTITTVTGEDGRVECYIN 411

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             +DI+E+K +   I   A  D LTG+PNR S    L   L            VM++D+D
Sbjct: 412 TFSDISERKANEARIHDLAHTDTLTGLPNRMSLYSGLEERLANVQ-----PIGVMILDLD 466

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND LG  VGD +LV + RR+   +    ++ARL G+ F I+L     +  +   A
Sbjct: 467 NFKIINDTLGHHVGDQLLVEVARRLVCCVGEQGMVARLGGDEFVIVLDCPQATQIVGRVA 526

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +A P  +   E+  ++SIG             +LKN + AMY AK  G N+ + 
Sbjct: 527 KEVLQRLAQPYLIEGYELHSSSSIGIGVSPHDGSDPYSLLKNIDTAMYAAKSSGKNNFKF 586

Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  ++    ++R+ ++  L  A+  +E  L Y P + L    I+G+EAL++W+HP+WG +
Sbjct: 587 FTEKMREQINERMQMENHLRQAILRNEFELHYQPQVDLGTGRIIGMEALVRWNHPEWGMV 646

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  ++  +  ++L    R I  W  Q     + I +NI+++ L    L  
Sbjct: 647 HPEKFIRVAEECNLVIPLGEWVLCEACRQISQWSRQGL-EAVCISVNISARQLKSRYLFT 705

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L+      P  ++L  +ES VM +PE++   +  L+  G++L +DDFGT  S LSY
Sbjct: 706 LIDNLMMTHQIKPGMLELEITESAVMDDPEQTIPRMKELKNKGVALAIDDFGTGYSSLSY 765

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S +          AI  + I +A+ +   ++A+ +  E  ++ L   
Sbjct: 766 LKLLPLTRLKIDRSFVKDIETDPNDAAICAATIALARTLGLGLVAEGVETEAQLEYLRAQ 825

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           GCD  Q  + + PL  N+I+  +      V ++
Sbjct: 826 GCDSAQGYYFSKPLPANNIMAFVSRHQQEVMSS 858


>gi|302878855|ref|YP_003847419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581644|gb|ADL55655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 925

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 153/601 (25%), Positives = 276/601 (45%), Gaps = 20/601 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++   L+    L++ LI F+ ++H          +     R +     S + +   D   
Sbjct: 326 VLGERLIPVSTLLLGLIFFSSLKHARTHVRAQ--LAETDLRIAATAFESEESMIITDSRG 383

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEF 483
             +          G  S    G   + L      DR    F   +   +    G+ Q E 
Sbjct: 384 IILKVNQVFTATTGYTSEEAVGKTPSLLKT----DRHSAEFYHEMWRQIKQ-TGKWQGEI 438

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             +  + + +  ++ I  + + NG +  Y+G   D+TE+K + E I+  AF D LTG+PN
Sbjct: 439 WDKRKNGEIYPKLLNIYAVKSKNGVVTHYVGSYTDLTERKMAEEKIISLAFYDTLTGLPN 498

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+  LDRL   L  S         ++ ID+DK+K +ND LG  +GD +L  +  R+   +
Sbjct: 499 RRLLLDRLNYALA-SGLRTGKNGALLFIDLDKFKTLNDTLGHDIGDLLLKQVAHRLKACV 557

Query: 604 KFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  D +AR+ G+ F ++L   N      + +       +  ++ MP  LL  E   + SI
Sbjct: 558 REIDTVARIGGDEFVVMLEDLNIESVEAAAQTEVIGEKILAALRMPYQLLTNEFHSSVSI 617

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G + ++++  +  E LK A++AMY AK  G N +  F      +      ++ +L  A+ 
Sbjct: 618 GISLFSNNGQSQDEPLKQADIAMYQAKKSGRNKLRFFDQRMQDTISSRANLEAELRKALA 677

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N +L L Y   +    + I G E L++W HP  G IS ++F+ +AEE  +I  I L++LE
Sbjct: 678 NEQLQLHYQIQVDSAHQTI-GAEVLLRWIHPVNGIISPAQFVPVAEETGLILPIGLWVLE 736

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                +  W+D      + + IN++++    N     ++++I +   +P+ +KL  +E +
Sbjct: 737 TACAQLKKWQDNPATAQLILAINVSARQFHQNGFATEVRSVIERHDINPALLKLELTEGM 796

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--K 894
           ++ N + +   +  L++ G+  +LDDFGT  S L YL  +P   +K + S +        
Sbjct: 797 LLNNLDDTIATMRSLQEFGVQFSLDDFGTGYSSLQYLKRLPLAQLKIDQSFVRDLATGYN 856

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             AI+R+II MA ++   +IA+ +  EI  + L +  C + Q      P+       LL 
Sbjct: 857 DQAIVRTIIAMAHSLNLNVIAEGVETEIQRQILLKNQCSHFQGYLFGKPMPIEQFESLLS 916

Query: 955 E 955
            
Sbjct: 917 S 917


>gi|257095482|ref|YP_003169123.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257048006|gb|ACV37194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 922

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 153/681 (22%), Positives = 285/681 (41%), Gaps = 39/681 (5%)

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            +          + L  +V      ++    +   +A+ ++ A  L+             
Sbjct: 244 IWAVSTLPEFPEVGLHVVVGVSKQDLLAAANRNLVQALAILLAVWLLVFGG-------AW 296

Query: 361 RLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATGYFSQGIFSD-GER------QSLAV 411
            L   ++   L   + +  +   +   V++        +Q +  +  ER        +A 
Sbjct: 297 VLARGVMDRGLAEEMRIRELNEQLEQRVLERTARLESANQELNREIAERSRAEAELRIAA 356

Query: 412 LG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           +   S + +   D     +          G ++  + G  R  L      D      + +
Sbjct: 357 IAFDSQEGMMVTDAHGVILRVNRAFVEETGYSAEDVVGRKRTMLTS-GREDAALDDAMWE 415

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +    R G  Q E   R  + + + + + I  +    G +  Y+    DIT++K   + +
Sbjct: 416 TV--QRCGAWQGEVWDRRKNGEVYPVWLTISAVKGQGGLVTHYVATHIDITQRKAVEDQL 473

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              AF D LT +PNR+  LDRL  +L  S    N +  +M ID+D +K +ND  G  VGD
Sbjct: 474 HKLAFYDPLTQLPNRRLLLDRLGHVLAGSTRSRN-QGAIMFIDLDNFKALNDTQGHDVGD 532

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS----LKIADFAIAMRKSIAMPI 645
            +L  + +R+   ++  D +ARL G+ F +++           ++   A  +  ++  P 
Sbjct: 533 RLLAEVAQRLKSSVRQCDTVARLGGDEFVVMVQDLAADSMVVAQVEAVAGKILAALDCPY 592

Query: 646 NL---------LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            L                TASIG   + +      E+LK A+LAMY AK  G N +  F 
Sbjct: 593 RLVFDAELGRRNALNYHCTASIGITLFGAHSTNVDELLKQADLAMYQAKDSGRNAIRFFD 652

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +      ++ DL  AVE  +  L Y P +      + G EAL++W H + G +  
Sbjct: 653 PEMQAAITSRVALEADLREAVEAGQFQLYYQPQVVGESHRLTGAEALLRWHHSRRGMVPP 712

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           SEF+ +AEE  +I  +  ++LE     + +W  Q  M  + + +N+++  +   +  + +
Sbjct: 713 SEFIPLAEETGLILPLGQWVLETACAQLATWASQPEMAQLTVAVNVSAHQIRQTDFVDQV 772

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A+++    +P R+KL  +ES+++ N E     +  L+  G+  +LDDFGT  S LSYL 
Sbjct: 773 LAVLADAGANPQRLKLELTESLLVSNVEDIIAKMTLLKSRGVGFSLDDFGTGYSSLSYLK 832

Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +    +     AI + I+ +A+++   +IA+ +  E     L   GC
Sbjct: 833 RLPLDQLKIDQSFVNEVLTDANDAAIAKMIVALAESLGLAVIAEGVETEEQRNFLAESGC 892

Query: 933 DYIQDSHVASPLGFNSILKLL 953
              Q    + PL      + +
Sbjct: 893 HAYQGYLFSKPLPLAGFEQWI 913


>gi|217971350|ref|YP_002356101.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217496485|gb|ACK44678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1074

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/593 (25%), Positives = 281/593 (47%), Gaps = 15/593 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 470  PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529

Query: 429  TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H     +F T +   +    G+ + E   + 
Sbjct: 530  LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             + Q +   + I  + N  G I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F
Sbjct: 586  KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + ++  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 646  NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +AR+ G+ F +IL    N L I   A  + +++ MP +L +REI ++AS G   +    
Sbjct: 705  FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 764

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 765  LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNEAMFARMELEQRLRRAVAQNEFALHYQ 824

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +    +  +EALI+W  P +G I   +F+ +AEE  +I+ +  ++L +   D+  W
Sbjct: 825  PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 885  QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R +G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 943  HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +I+ M +++E  ++A+ I  E     L  +GC + Q   ++ PL F+ I  LL
Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055


>gi|323488506|ref|ZP_08093750.1| sensor histidine kinase (sporulation kinase) [Planococcus
           donghaensis MPA1U2]
 gi|323397723|gb|EGA90525.1| sensor histidine kinase (sporulation kinase) [Planococcus
           donghaensis MPA1U2]
          Length = 924

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 131/565 (23%), Positives = 255/565 (45%), Gaps = 22/565 (3%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + +  + E   L +    + ++ +D+            +ILG  +G + G        I 
Sbjct: 376 ESLSREKE---LILNSVDEGIFGFDLDNKITFCNRAAESILGYRNGELIGQS---YKSIL 429

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             + D   T +          L+ + +    D     +   +  +   N  ++  +    
Sbjct: 430 PANHDLIITSV---------SLEEDLKFVKKDGNDFSVEYVVSSIK-ENEQVIGEVVTFR 479

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT++K+  + I   A+ D+LT +PNR    D L    + +      +  V+ +D+D++K
Sbjct: 480 DITKRKQLEKEISHLAYYDHLTDLPNRILLEDYLKKKTEKAKVSGQ-KVAVLYLDLDRFK 538

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G + GD +L ++  RI   +     ++R  G+ F I+L   +N+ ++ +    +
Sbjct: 539 IINDSFGHSYGDMLLKNVANRIRRSVPADAFVSRQGGDEFTIVLPGYDNNQEVLNLVDNL 598

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S   P +L   E+ +  SIG + +     T+  ++KNA+ AMY +K + G +   F+ 
Sbjct: 599 IASFTEPFSLKGNEVYIKTSIGISVFPEHGKTAEVLIKNADAAMYKSKEKSGTYHHFFKS 658

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      ++  L  A+EN EL L Y P +      I+G EAL++W+HP  G +S  
Sbjct: 659 EMSDWSMESIYLENALYKALENDELSLHYQPQVDSETNRIIGAEALLRWNHPTRGMVSPI 718

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  +I  I  ++L    + +     Q     + + +N++ +   +++L   ++
Sbjct: 719 EFIPVAEETGLIVPIGKWVLLNACKQLKKLHAQ-GNSNMSVSVNLSGRQFEEDDLIPMIE 777

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  +P  + +  +E+ +  N   +   +  ++ +GI + LDDFGT  S L YL  
Sbjct: 778 NILVETGIAPEFLHIELTENQIFKNTHVTLEKMREIKALGIKIALDDFGTGYSSLGYLKN 837

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P DT+K + S M          AI  +II +A+N+   +IA+ +     +  L    C 
Sbjct: 838 FPIDTLKIDRSFMFDILTDSDNAAITSTIITLAQNLNLNVIAEGVETAEQLDFLMAKNCF 897

Query: 934 YIQDSHVASPLGFNSILKLLKERFP 958
            IQ  + + PL   ++   + +  P
Sbjct: 898 NIQGYYYSKPLPAEALENYIGQSTP 922


>gi|304412630|ref|ZP_07394234.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307307241|ref|ZP_07586978.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304348974|gb|EFM13388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306910296|gb|EFN40728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1074

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/593 (25%), Positives = 281/593 (47%), Gaps = 15/593 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 470  PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529

Query: 429  TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H     +F T +   +    G+ + E   + 
Sbjct: 530  LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             + Q +   + I  + N  G I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F
Sbjct: 586  KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + ++  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 646  NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +AR+ G+ F +IL    N L I   A  + +++ MP +L +REI ++AS G   +    
Sbjct: 705  FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 764

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 765  LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNEAMFARMELEQRLRRAVAQNEFALHYQ 824

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +    +  +EALI+W  P +G I   +F+ +AEE  +I+ +  ++L +   D+  W
Sbjct: 825  PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 885  QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R +G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 943  HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +I+ M +++E  ++A+ I  E     L  +GC + Q   ++ PL F+ I  LL
Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055


>gi|119944709|ref|YP_942389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119863313|gb|ABM02790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 962

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 147/575 (25%), Positives = 253/575 (44%), Gaps = 12/575 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +   +      +       + SLAV  S + +   D+             + G +   + 
Sbjct: 378 MVGTVQDITEQKRASDSLLKLSLAVEQSPNSIVITDLDGKIEYVNNMFIKVTGYSRDEVL 437

Query: 447 GP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   R             F+ +       R      E   R  D   +     I P+  +
Sbjct: 438 GQNPRILKSGKTPQ--TTFKEMWAHL--TRGDIWHGEIINRRKDKSIYIESATITPVKQA 493

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G I  Y+ I  DITE+KK+       A+ D LTG+PNR+    ++   L+++ ++    
Sbjct: 494 DGKITNYVAIKEDITEKKKAEAYTENLAYFDQLTGLPNRRMLQAQVKYRLNMAQSNHQ-P 552

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            TVM +D+D +K IND LG  VGD VL+ + +RI + ++  D ++RL G+ F ++  +  
Sbjct: 553 LTVMFLDLDNFKNINDSLGHTVGDQVLIKIAKRIKKAIREVDTVSRLGGDEFIMLFPN-T 611

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++      A  + + I+    +   E+T+T SIG A + +       +LKNAE AMY  K
Sbjct: 612 DANAAMHIATTLIQEISKASVVEHNELTITPSIGIAIYPNDGNDFKTLLKNAETAMYRVK 671

Query: 686 HRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           +   N             S  + ++  L  A++ +EL L Y P I   + +I+G EAL++
Sbjct: 672 NDSRNGFHFVTPEMQLSASRNLQLENALRHALKRNELQLYYQPQISTSNGQIIGAEALLR 731

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G IS +EF+ IAE    I  I  ++L    R   +W D     P+ I +N++  
Sbjct: 732 WHHPELGMISPAEFIPIAESSGQIIEIGEWVLRTAIRQTKNWMDD-GFTPMIIAVNLSVV 790

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +  ++++       ++L  +E+V M +PE    ++    + GI +++DDF
Sbjct: 791 QFRQKNLLTLITDILAEVQLPNEYLELELTEAVTMHDPESVINVMNTFHEQGIRMSIDDF 850

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL       +K + S +          AI+ +II MA N+    IA+ +   
Sbjct: 851 GTGYSSLSYLKKFKVYKLKIDQSFIRDISNDPDDRAIVSAIIDMASNLGLQTIAEGVETA 910

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  L   GC  +Q  + + PL      +     
Sbjct: 911 EQLAFLRLHGCHEVQGYYFSKPLPSVEFEQFRHNH 945



 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/458 (14%), Positives = 142/458 (31%), Gaps = 50/458 (10%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI-- 232
           L     +  + +  T    I   +A  + I   I Y  N+S+ L    A+ +    ++  
Sbjct: 24  LLRSIEWHGSTHLHTFMEIIATLLALFVGILSFIHYHTNKSNQLFLLIAVGFFGTAFLDG 83

Query: 233 ---SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH----WNRWHAKVGYI 285
               +   F ++        L+ W   +     S  + + +++             +   
Sbjct: 84  YHAIVTSLFFAEYFPSIPSSLIPWSWIASRLFLSIFLFWSYIHFRYMHSTTINERHLYTF 143

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLA---SIVLYYTYFIIYHG---MKGYERAVL 339
                    + F                 +A     + +      Y      K       
Sbjct: 144 ASLSTLTTFLFFAFVPLSNAYNTEFIFHRMAEWVPGLFFSLALCGYLVKGNWKKDIFEYW 203

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           L  + I+  I  I    +     D +     L+  +  I++LIG     + L      Q 
Sbjct: 204 LTLSLIVSVISQIVFMSSSEVLFDIEFDAAHLLKKISYILVLIGLLKSIYKLVLYGVIQR 263

Query: 400 IFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                +   L      +G   +  +      T++  +  + G+   S +     W   +H
Sbjct: 264 AELIKQTYKLKRYQRIAGLGSYLLNFKTGIWTSSEILDELFGIDQ-SYNHSTEGWTLIVH 322

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +DR      L + V  +      E+R+    D    W+    +   +++G  ++ +G  
Sbjct: 323 PDDRIKMDDYLKNEVLAKGKPFDKEYRIVRQTDQSIRWLHGLGKLEFDNDGLPVKMVGTV 382

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK- 575
            DITEQK++          D+L                L LS   +    ++++ D+D  
Sbjct: 383 QDITEQKRAS---------DSL----------------LKLSLAVEQSPNSIVITDLDGK 417

Query: 576 YKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDIL 609
            + +N++     G +  D+VL    R +          
Sbjct: 418 IEYVNNMFIKVTGYSR-DEVLGQNPRILKSGKTPQTTF 454


>gi|226311855|ref|YP_002771749.1| signaling protein YkoW [Brevibacillus brevis NBRC 100599]
 gi|226094803|dbj|BAH43245.1| probable signaling protein YkoW [Brevibacillus brevis NBRC 100599]
          Length = 816

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 184/798 (23%), Positives = 325/798 (40%), Gaps = 39/798 (4%)

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           SF +    +I VA+  +       +         + +   A    +  +     G L+  
Sbjct: 11  SFLVILSYLIAVAASFSALNLAARVSKSKGKHQLLWLMFGATTMGLGIWSMHFVGMLALT 70

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL------ 296
           + +     + +   S I       I LF     N    ++G       A I+ +      
Sbjct: 71  LPIKVLYDMEYVILSVILAIFVSSIALFTITKRNLHARQLGIAGILMAAGISGMHYVGMA 130

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
             M          I  I +A+       +++++  +   +   L      + +      M
Sbjct: 131 AMMIEITYDTRIVILSIMIAATASAAALWLLFYFRRDQSKYAYLYKLGSSLIMGAAIAGM 190

Query: 357 AITKRLDNDIIQP--------------ALVGGLVLIVILIGFTVIQHVLATGYFSQG--- 399
             T  +                     +L   +VL   L+    +  +      SQ    
Sbjct: 191 HYTGMVAAHFYGTEQPTKQVGTQIEPESLAYIIVLATFLLIGITLFGLFINKRLSQKDTV 250

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHI 458
           I             +   +   D     +   P +  I GL          +    +I  
Sbjct: 251 IQESESWYRSLYKNNEYGIISLDTGGCIIKMNPAVTKIGGLREEEFINQHVSKIRMHIVE 310

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             R+  +          R    +E  +   +     + +   P+    G+++    I  D
Sbjct: 311 EQRELTKDSFAQSFAPNRN--NFETTIFHPNGNRVELSVLNVPV-EIEGEVVGNHIIVKD 367

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+ +  E I   A+ D LT +PNR+ F   L   ++ S+ D +    VMVIDID++K 
Sbjct: 368 ITEENRVKEKIRYLAYHDELTDLPNRRKFNQVLHQSIEKSSQDSS-SFAVMVIDIDRFKM 426

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637
           IND LG + GD  L  ++ RI +  K     +AR+ G+ F I+  +  +  + A  A  +
Sbjct: 427 INDSLGHSYGDIFLQGVSDRISKSAKGYHATIARMGGDEFTILCETGADGREAASLADKI 486

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +++  P  L + E  ++ASIG A +      +  +LK A+ AMY  K +G N    +  
Sbjct: 487 IEALKQPFTLKDSEFYISASIGTAIFPDHGTDAVALLKKADTAMYEVKKQGKNGHLFYTT 546

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  + + I+ DL  A+E  EL + Y P        ++G+EAL++W+HP  G +S  
Sbjct: 547 DFDAQLLENIEIERDLRKAIERKELVVYYQPQFHSESNRMIGVEALVRWNHPTKGMLSPG 606

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAEE  +I  I  ++L    R +  W D+   P I + +N++S       L + ++
Sbjct: 607 VFIPIAEETGLIYEIGTWVLREACRQMKQWHDKGG-PLIPVSVNLSSHQFHQRNLVQYIK 665

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  +P  ++L  +ES++M +P  S  +L  L KIG  ++LDDFGT  S LSYL  
Sbjct: 666 NILEETKLAPHFLELEITESMMM-DPAVSISILHELNKIGTRISLDDFGTGYSSLSYLKK 724

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P   +K + S +T     E   AI+ +II MAK+++  +IA+ I  +  +  LT   C 
Sbjct: 725 FPIHKLKIDRSFITDLSRNENDKAIVATIISMAKHLKLDVIAEGIETKDQLDILTENHCK 784

Query: 934 YIQDSHVASPLGFNSILK 951
            IQ  + + PL  N + +
Sbjct: 785 EIQGYYYSRPLSANEVEQ 802


>gi|330970857|gb|EGH70923.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 798

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 155/561 (27%), Positives = 265/561 (47%), Gaps = 14/561 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 224 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 283

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 284 GQH--DSAFYAAMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVA 339

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K++   +   A  D LTG+PNR  F  RL   L  S    +L   V+ +D+D
Sbjct: 340 VFADISSLKQAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 398

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 399 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQTSDAQAIA 458

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +    + P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 459 NKLLACFSTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 518

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L+   + G EALI+W+HP +G +
Sbjct: 519 YTCDLSDQASERIALEQELRRALERNQLTLAYQPKIDLLTHTMAGAEALIRWNHPTFGEV 578

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E
Sbjct: 579 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 637

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L +DDFGT  S LSY
Sbjct: 638 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 697

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LT  
Sbjct: 698 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 757

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GC+ IQ   V+ PL       
Sbjct: 758 GCEQIQGYIVSLPLDAEEFRA 778



 Score = 39.2 bits (90), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 14/119 (11%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYE 482
               +          G+    + G     L               L             E
Sbjct: 8   DGHIMDANEAFVERTGIPLDEVIGKTPTELNLWAVPGIGPKVLLQL-----QTGDIHNLE 62

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK------KSLEGILCNAFQ 535
              R  + +    ++  +P    +  I   + I  DIT+ K      +  E     AF 
Sbjct: 63  IPFRRKNGETFSGLMSAQPF--EHSPIPAVLVIVRDITQLKLARQQLQLSEEKFAKAFH 119


>gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 840

 Score =  541 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/569 (26%), Positives = 259/569 (45%), Gaps = 12/569 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           V+      +      +  S A   S   +   D+  +     P    I G  S  + G  
Sbjct: 270 VMRDITERRKAEKQLKILSQACEQSPASIVITDVQGNITYVNPKFEEISGYKSAEVLGRN 329

Query: 450 RNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              L   +    D +     L S           EF  R  + + +W    I P+SN  G
Sbjct: 330 PRILKSGNKTQEDYELMWKTLAS-----GRNWHGEFHNRRKNGELYWERASISPISNQQG 384

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +  Y+ +  DIT++K+  E +   A  D+LTG+PNR    DRL   ++ +    ++   
Sbjct: 385 IVTHYVAVKEDITKEKQQAEALFHQAHYDHLTGLPNRILAKDRLQQAIESALRQKHI-FG 443

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M +D+D +KK+ND LG   GD +LV ++ R+   L+  D +ARL G+ F IIL   ++S
Sbjct: 444 LMFLDLDNFKKVNDTLGHDAGDQLLVEVSERLQRALRQTDTVARLGGDEFLIILDQVSHS 503

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            K+   A  + + +  P+NL   E  V  SIG   +      +  +L+NA+ AMY AK  
Sbjct: 504 RKLMAIAQRLLRVMRQPVNLQGLEFFVHGSIGITVFPDDGFHADVLLRNADTAMYAAKLA 563

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F   ++     R+ I+ +L   +   E  ++Y PI+ L   +IVG EAL++W 
Sbjct: 564 GRNMFRFFTPHMNQAAQQRMAIESELRQGLSRQEFQILYQPIVSLESGQIVGAEALMRWH 623

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +   G +   +F+ IAEE+ +I  +  ++L+ +      W         ++ +N++ + L
Sbjct: 624 NRLLGTVPPDQFIPIAEEVGLIVELGEWLLDNVCCQAAHWHSALGEQTFWVSVNVSPRQL 683

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D+     +Q  + +    P  ++L  +E++++         L  L +  I+L+LDDFGT
Sbjct: 684 KDSYFVAILQGFLQRYQVRPEWLELEITENLILEENGDLLKNLSDLEEENIALSLDDFGT 743

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL    F+++K + S +           ++R+II MA ++E  +IA+ I     
Sbjct: 744 GYSSLNYLRKFNFNSLKIDRSFVELLPHDNNTVGLVRAIIAMAHHLELKVIAEGIETPEQ 803

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
              L   GCDY Q    +  +       L
Sbjct: 804 WNFLRLQGCDYGQGYLFSPAIAVEEWESL 832



 Score = 43.0 bits (100), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           + +  T      +       ++A   S D ++ +      +           GL    + 
Sbjct: 142 EQIEKTARTQAALMQSEINFAVAFNQSPDPIFIYGRNSGCIMDVNQPFCQFFGLTKQELV 201

Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPM 502
           G   + +  ++    R +F   L   +  + G +++E R   V   + Q   M++   PM
Sbjct: 202 GVSRQQFYFWVDEQQRQSFLRDL--LLWQKDGLVKFENREIEVYDQEKQVRTMLLSGEPM 259

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 +   + +  DITE++K+ + +   +
Sbjct: 260 --EFNRVDCLLFVMRDITERRKAEKQLKILS 288


>gi|297531107|ref|YP_003672382.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
 gi|297254359|gb|ADI27805.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
          Length = 947

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 146/664 (21%), Positives = 272/664 (40%), Gaps = 15/664 (2%)

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357
            M  YY        R     +   +    ++  ++   +               +    A
Sbjct: 294 GMLLYYSAALGGYTRPLFDGVAAAFGQAALFPAVEVLVKDAYTAVRPAAFAAISLAETAA 353

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
             +            G     ++ +   +             +    +R       + DI
Sbjct: 354 SAESGLLSPWSSPPEG-----MMTLAQLMSTSSRDMERLHVRLQMSEQRYKSLFEHNTDI 408

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  D+     +  P    +LG     +       L YIH ND           +     
Sbjct: 409 VYSTDLHGRLTSVNPAFEQVLGYKKEEILYTNS--LKYIHPNDIPRVTRYFYRALQGNIQ 466

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E  + A   +     ++  P+   +G  +   GI ++ITEQKK+ E I   A+ D 
Sbjct: 467 TYNLE--IPAKSGERLLFQMKNIPII-VDGKKVGIYGIGHNITEQKKAEEKISYLAYYDI 523

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            T +PNR  +++  +  LD +      +  V +ID+D++K IND +G   GDD+L  L  
Sbjct: 524 DTNLPNRTKWMELFSEQLDKAKQKQR-KMAVALIDLDRFKWINDSVGHYAGDDILRQLVE 582

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           RI  +L     L R  G++F ++   +  +    + A+ + + +A PI    +E  VTAS
Sbjct: 583 RIRRVLPPSAELGRFHGDKFCLLFPLKTEAQAATEAALRIVREVARPIVYDGKEFFVTAS 642

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715
           +G A +         +L++A++A+  AK  GGN VE +           ++    L  A+
Sbjct: 643 VGLAMFPDDGEDEHALLRHADMAVNMAKKGGGNRVERYCAQMNEEAMHRLEMGGHLRRAI 702

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E +EL+L Y PI+ +    +   EALI+W HPK G +   EF+ +AEE  +I  I  ++L
Sbjct: 703 EENELFLCYQPIVDVHTGVVKATEALIRWRHPKLGLVRPDEFIPLAEETGLIHEIGRWVL 762

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   R    W++      + I +N++          + ++  + ++  SPS + L  +E 
Sbjct: 763 KTACRQTKQWQEMTGNNRLAIFVNVSPVQFQHERFVDNVKQALKQSRLSPSCLHLELTEH 822

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            ++     +   +  LRK+G+ + +DDFG+  S   YL  +P   +K + + +       
Sbjct: 823 SMLRYLSSTMRTMEELRKLGVGIAVDDFGSGYSSFHYLKRLPATILKIDRAFIEQLHANA 882

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI++++I MA  +    IA+ +     +  L  + C Y Q      PL    +++ +
Sbjct: 883 SDEAIVKAMITMAHGLGLETIAEGVETPEQLNRLRDLQCTYAQGYVFCPPLLAEEVMRYV 942

Query: 954 KERF 957
            E+ 
Sbjct: 943 TEKQ 946


>gi|289627703|ref|ZP_06460657.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289649022|ref|ZP_06480365.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868476|gb|EGH03185.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 829

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 156/564 (27%), Positives = 269/564 (47%), Gaps = 15/564 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   D  +           I G +     G   R    
Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   + ++         G  Q E   R  + + +   + I  + N       ++ 
Sbjct: 315 GQH--DSAFYASMWHQLAA--DGHWQGEISNRRKNGELYPSWLTINAVRNKANLTTHFVA 370

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL + L  S    +L   V+ +D+D
Sbjct: 371 VFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSL-GAVLFLDLD 429

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L            A
Sbjct: 430 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIA 489

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 490 NKLLACFNTPFEAGEHELFISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 549

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +     +  S+R+ ++++L  A++ ++L L Y P I L+   ++G EALI+W+HP +G++
Sbjct: 550 YTCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDV 609

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  + +  WR     P   + +N+A   L    L E
Sbjct: 610 PPEHFIPLAEENGMILQIGEWVLEQACQQMGKWRK-TCQPFGPVSVNLAGAQLRQTNLVE 668

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+K+G+ L +DDFGT  S LSY
Sbjct: 669 HIEQLLADNGLEPGCLQLEITENFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSY 728

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LTR 
Sbjct: 729 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSMQLTVIAEGVENSEQQQFLTRE 788

Query: 931 GCDYIQDSHVASPLGFNSI-LKLL 953
           GC+ IQ   ++ PL       + L
Sbjct: 789 GCEQIQGYIISLPLQPEEFSARFL 812



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +        I G + 
Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ + DR      L      R     +  R+R  D       +   P
Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIRLCELSSHP 237

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  D L  + IA DITE ++  E +   A 
Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268


>gi|144899934|emb|CAM76798.1| sensory box/GGDEF family protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 768

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 144/681 (21%), Positives = 294/681 (43%), Gaps = 15/681 (2%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
              I  + ++ +  +   S +   + A I         +     + +   +        +
Sbjct: 93  WLLIAVTTVSLMGWVVWASIHIAPMAAIIPSSLYIGAAMLAAALVFWRRARRIPGNGYSL 152

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            A +        L       +   +    ++  ++ I + +   +     +    ++G  
Sbjct: 153 VALLFALWGLHKLDYPWLAAVPQAVPYGFMLTQVLSIGLGVALLIAADRESRARENEGRR 212

Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                  L   A+  + + ++  D            + + G A     G     L     
Sbjct: 213 RSQALLHLQGEAMAATANAIFITDRAGRIEWCNKAFSQLTGWAETEAMGRGARRLLMGAE 272

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            DR      L      R    + E  +R  D   + +   + P+ +  G I  Y+ +  D
Sbjct: 273 RDR-RMDEALK-----RGENWRGELNLRRRDGTLYVVDQNVTPIRDDRGRISHYVVVQED 326

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE++++ E I   +  D LT +PNR  F +++   +  + T+ +    V+++D+D +  
Sbjct: 327 VTERRRAEERIRFLSNHDALTALPNRLLFREQIQRAIGRAKTERHG-LAVLILDLDDFSH 385

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            NDVLG   GD +L+++T R+    +  + LAR+ G+ FG +L++ +    + + A ++ 
Sbjct: 386 YNDVLGHDGGDHLLLAITERLMSTARGIESLARVGGDEFGFLLLTTDGGESVVELAGSLT 445

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K++  P ++   ++ V A+IG   +      +  +LKNA++AMY A     N    F  +
Sbjct: 446 KAMRRPFDINGHDVQVGAAIGITLYPDDGADADTLLKNADMAMYRAIEDNPNGYRFFAPT 505

Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  ++ DL  A++  EL L Y PI+      I+  EAL++W+H   G IS  E
Sbjct: 506 MDAELALRRRLESDLRKAIQRDELELHYQPIVDTQSRRIISFEALLRWNHADDGWISPVE 565

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  I  ++L R  + +  W D+  +PP+ + +N+++  L   ++   ++ 
Sbjct: 566 FIPMAEGNGMIGPIGEWVLRRACQQMRDW-DRMGIPPVPVAVNMSALQLKRQDVPMLVRK 624

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++      R++L  +E+ VM + + ++ +   +  +G+ L +DDFGT  S L+ L   
Sbjct: 625 MLTEAGVPSHRLELELTETTVMEDADAAQRIFADIAGLGVRLAVDDFGTGYSSLARLKRF 684

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +    E     AI R+II M   +   ++A+ +     +  L   GCD 
Sbjct: 685 PVGKLKIDRSFVGDLAEDEGDAAIARAIISMGHAMGLKVVAEGVETPEQLAILAEAGCDA 744

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    +  +  +   +LL+ 
Sbjct: 745 IQGFLFSRAVPADQAAELLRR 765


>gi|126651947|ref|ZP_01724139.1| sensor histidine kinase; possible sporulation kinase [Bacillus sp.
           B14905]
 gi|126591216|gb|EAZ85325.1| sensor histidine kinase; possible sporulation kinase [Bacillus sp.
           B14905]
          Length = 934

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/569 (24%), Positives = 273/569 (47%), Gaps = 18/569 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMH 446
           + +       Q +  + E   L +  +G+ ++  D+ R+     P  A +LG  +   + 
Sbjct: 375 KELERVVAELQQLSREKE---LILNSAGEGIFGLDLDRNITFCNPAGALMLGYETDRELI 431

Query: 447 GP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G  +   +      D       L++         +  FR    D+    +      +   
Sbjct: 432 GQSVEIIMSGCEAEDNMTVSPFLNANFN----SYEVFFR---KDHSNFPVEYVTSLIKEG 484

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  ++  +    DIT++K+  E I  +A+ D+LT +PNR   +DRLT  L  +  +   +
Sbjct: 485 D-KVVGEVITFKDITQRKQLEEKIKYHAYFDSLTDLPNRVLLIDRLTQGLKYAKVNGE-K 542

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG + GD +L S+ +R+   +     ++R  G+ F I L +  
Sbjct: 543 LAVLYLDLDRFKLVNDSLGHSYGDLLLQSVAKRLSACVPEDATVSRQGGDEFTIYLPNIK 602

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               I      +  S + P NL++ EI +  SIG + +  +  T+  ++KNA+ AMY +K
Sbjct: 603 CENDILKVINCINASFSQPFNLIDNEIYIKTSIGISLFPKNGDTTETLIKNADTAMYKSK 662

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G     F   + +   + + ++ DL  A+E  EL + Y P I     +I G+EAL++
Sbjct: 663 ETPGTSYHFFSEGMDTRTFESIKLENDLYKALERDELIIFYQPQINYKTNKIKGVEALLR 722

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+H + G I+   F+ +AEE  +I  I  ++L+   + +  W +Q   P I + +N++  
Sbjct: 723 WNHREHGMITPDRFIPLAEETGLIVPIGEWVLKEACKQLKEWHNQ-GYPLISMSVNLSVH 781

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               N L   ++ ++ +T  SP  ++L  +E++++ N E +   + +L  +G++L +DDF
Sbjct: 782 QFEQNNLFSIIENVLYETDLSPEYLQLELTENLIVKNTEVTLKTMTQLNGLGVNLAIDDF 841

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           GT  S L YL  +P  T+K + S +    T+   AI  +II +A+N++  +IA+ +  + 
Sbjct: 842 GTGYSSLGYLKNLPISTLKIDKSFVQEMLTDDAAAITNTIITLAQNLKLEVIAEGVETKE 901

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
               L    C  +Q    + P+    I+K
Sbjct: 902 QADYLLEQNCHLMQGYFFSKPMKAGEIMK 930


>gi|144901030|emb|CAM77894.1| Two-component sensory box protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 828

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 148/571 (25%), Positives = 268/571 (46%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454
            +    D  R +  V   SGD ++  D     +   P    I G  +  + G   R    
Sbjct: 257 ERKRLEDNMRLAATVFENSGDGLFVTDAENRIIHVNPAFTRITGFTADEVLGRNPRLLAS 316

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D D F  +    +  R G+ Q E   R  D +       I  + +++G +  ++ 
Sbjct: 317 GRH--DHDFFIQLWTVLL--RDGKWQGEIWDRRKDGEMFAGWQNIAVVRDTDGKVQNFVA 372

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +DIT +K+  E +   A  D LT +PNR  F +RLT  +  ++ + NL   ++ ID+D
Sbjct: 373 VISDITTRKQVEERLSYAANHDPLTRLPNRTLFQERLTRAIARASRNHNL-VALLFIDLD 431

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K++ND +G   GD +L  +  R+   ++  D +ARLSG+ F IIL    +    A   
Sbjct: 432 RFKQVNDTMGHLAGDMLLQQVAERLSSCIRQGDTVARLSGDEFTIILEDVQDPRDAAVVG 491

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +  P+ L   E  +++SIG + + +       +LK A+ AMY AKH G N  + 
Sbjct: 492 HKVLRLLQEPVALTGGEAHISSSIGVSLYPTDAGDPQTLLKLADAAMYRAKHLGRNSCQF 551

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                ++   +R+ ++  L  AV+  +  L Y PI  +     V +EAL++W HP+ G +
Sbjct: 552 HSEAVNAEAFERLALENALRGAVDQGQFLLHYQPIFDVKSGRAVAVEALLRWRHPEVGVV 611

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           + ++F+ +AEE  MI  I  ++ ++  R    WRD      + + IN++ + L   +L E
Sbjct: 612 APNQFLALAEETGMIVPIGRWVFDQACRQAKLWRDA-GHVDLRLHINLSPRQLRQPDLIE 670

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A +  +   P  + L   E+ V+        L  R   +G+ L +D+FG+  S  ++
Sbjct: 671 MVAAALEVSQLPPQALVLEVMETCVIDKAFDPSALFARFAALGVGLAIDEFGSGYSSFAF 730

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K   S +     +E    I+ +I+ +A+ +  T++A  I  +  +  LT  
Sbjct: 731 LRRLPVTILKVAQSFVRNLSSSEDESEIVTAIVALARGLHMTVVAPGIENKAQLDFLTGF 790

Query: 931 GCDYIQDSHVASPLGFNSILKLLK-ERFPLV 960
           GCD +Q   ++ PL    + + L  +R P  
Sbjct: 791 GCDKVQGFLLSKPLPGTEMTEFLDLKRSPAA 821



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 2/150 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             I + +   + +  +     R       +G  V   D     V   P   +++G     
Sbjct: 123 RAIFYAIERSHAASALKRSEGRFRALFANAGLGVVLADAHGRMVEANPAFLSMVGYGEVE 182

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G    +    H +D     T+    +   R   Q   R  A D +  W  +    M  
Sbjct: 183 LRG--EKFRDITHPDDIGLNDTLRAEVLDGSRDGFQLTKRYIAKDGRIIWAKLTCTVMRE 240

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534
           ++G     + +  DITE+K+  + +   A 
Sbjct: 241 ADGQQPFTVTVVEDITERKRLEDNMRLAAT 270


>gi|242238801|ref|YP_002986982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dickeya dadantii Ech703]
 gi|242130858|gb|ACS85160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dickeya dadantii Ech703]
          Length = 685

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 138/558 (24%), Positives = 253/558 (45%), Gaps = 14/558 (2%)

Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459
            E+Q +A      S + ++  D   + ++  P  + + G     ++G   R +    H  
Sbjct: 127 HEQQQIAAAVYDASHEAIFVTDADNNIISVNPAFSRLTGYHFDDVNGKNPRMFKSSRHP- 185

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
              +F   +   + + +G    E   R  +   +   + +  + ++ G I+ ++G+ +DI
Sbjct: 186 --PSFYAEMWHAL-HEKGLWIGEVWDRHKNGHDYLKELTVTVIRDAAGHIINHVGMFSDI 242

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T +KK  E I   A  D +T +PNR  F  +L      +    NL   +M+ID+D +K +
Sbjct: 243 TLRKKQEELIWRQANYDAITDLPNRHLFQSKLEQAAQHARRTGNL-MALMLIDLDHFKAV 301

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND +G   GD +L  +++R+ + ++  D + ARL G+ F +I+            A A+ 
Sbjct: 302 NDSMGHRAGDMLLTRVSQRLIDSVQHADTIIARLGGDEFAVIISDLFQPHDCDALAKALL 361

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           ++++ P N+    + V+ASIG A + +       + KNA+ AMY AK+ G N    +   
Sbjct: 362 ENLSHPFNIDGENMFVSASIGIACFPTDSDNLEALFKNADQAMYAAKNAGRNGFSYYSPA 421

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R+ +  DL  A+   +  + Y PI+ L    I   EAL++W HP  G +S +E
Sbjct: 422 LHDAARTRLRMTNDLRKAIREEQFEVYYQPIVALDTGHITKAEALVRWHHPTHGLVSPAE 481

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE-GMQ 815
           F+ +AEE  +I  +  ++  +    +  WR Q   P   + IN++   L   +  +    
Sbjct: 482 FIPLAEETGIIIPLGNWVARQAIAQLARWR-QFCDPRFQMTINLSPIQLRSQDFADMDWL 540

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +   S   I +  +E +++    R    L   R  GI + +DDFGT  S L+YL  
Sbjct: 541 RELDRHGLSGDAIAIEITEGLLLNAEPRVNRNLHMFRDAGIQIAIDDFGTGYSSLAYLRR 600

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              D +K + S +         +  +I+ MA ++   ++A+ +        L R+GCDY 
Sbjct: 601 FNIDYLKIDRSFIEDMDGVGHELCVAIVAMAHSLGLQVVAEGVETLQQSAMLKRIGCDYA 660

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    + P     I +LL
Sbjct: 661 QGFLFSRPQSAADITQLL 678



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +      +   D   + +T  P    I G     M    R++        + +   
Sbjct: 12  FQAILDRCPVGIAVIDYSGNYLTVNPAYCNIYGYTQQEMLH--RSFTMVFPPEAQGSVLE 69

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
               F+    G+L  E+ V   D     +     P + +     R + +  DI+E+KK+ 
Sbjct: 70  RHQRFLDE-GGKLGGEWTVTRRDGTLLTVWSESVPFAQAGHKADRLVYVL-DISERKKTH 127

Query: 527 EGILC-NAFQDN 537
           E      A  D 
Sbjct: 128 EQQQIAAAVYDA 139


>gi|218289743|ref|ZP_03493951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240200|gb|EED07384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 799

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 169/795 (21%), Positives = 327/795 (41%), Gaps = 61/795 (7%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           +T  +  L   ++ GVA  + I+  + ++   + ML       W ++         LS +
Sbjct: 36  ETRANRQLVWVVLGGVAMGIGIWS-MHFVAMLALMLPAQMTYNWGIVA--------LSLV 86

Query: 243 VNLPSGELLIW---RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
             +      ++   RA S   L+   ++     +  +        +   G    A  F +
Sbjct: 87  FAMAGPGAALYVVARATSPAKLAYGALLMGAGIVFMHYTGMAAMAVENGGFYYRAGPFVL 146

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP---AWILIFIWFIGLWM 356
           S                 I +  +Y  ++   +       L         + +      M
Sbjct: 147 S---------------VVIAIVASYVALWLSFRLATARGWLAQMAKVACALVMGIAIAGM 191

Query: 357 AITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
             T       + PA          G L L+V +    ++   +AT    + + +D  R  
Sbjct: 192 HYTGMWATVFVLPAHRRAAPMAYSGPLALVVAVFSAFILLAAIATVMLDRRLQADRRRFQ 251

Query: 409 LAVL-------GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           LA            D ++  D     V   P    +  +    +    R +   I   DR
Sbjct: 252 LADERFRSLYTHHSDAIFTLDTRGAIVDQNPRAKEL--VPEHELRKSARAFARMIDRRDR 309

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                     +         EF +RA D   H     I  + +   +I     +A D+T 
Sbjct: 310 PRVFEDYRRALSGSTT--NGEFLLRAGDKALHMSATHIPIVLDD--EIEGVFLVARDVTA 365

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K + E +   AF D LT + NR+ F  R+   +  +         ++ +D+D++K +ND
Sbjct: 366 EKVAAERMNYLAFHDTLTHLANRRHFEARVDEFIHDAQ--PGDEMQILFVDLDRFKSVND 423

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L  + R + E+     ++AR+ G+ F I L       +    A A+   +
Sbjct: 424 TLGHEFGDKLLQEIARILKEVAGEDALVARMGGDEFTITLFH-QPMERAVAVADAILNRL 482

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ + +R + +TAS+G AS+    +T   +L++A+LAMY AK  G +    F   +  
Sbjct: 483 RKPVRVEDRPLYMTASVGIASFPRHGVTRDMLLRHADLAMYTAKAEGRSTYRLFEERTAA 542

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +   R+ ++++L  A +  +  + Y P I + D+ +VG+EAL++W       +  SEF+ 
Sbjct: 543 NAKSRLELEQELRTAAQRGDFEIHYQPKIDMRDKSVVGVEALLRWRRAGGEYVPPSEFIP 602

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  I  + L    R   +W D     P+ + +N++   +L +   + ++ ++ 
Sbjct: 603 IAEETGLIAPIGEWCLRAACRQAKAWLDAGR--PLRVAVNLSPYQVLTDGFLDVVREVLE 660

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T      +++  +ES +M + ER+   L   + +GI ++LDDFGT  S LS L ++P +
Sbjct: 661 ETGLPAQYLEIEVTESAMM-DAERAERFLAGCQALGIEVSLDDFGTGYSSLSRLTHLPLN 719

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + +         +  A++ SI+ +A N+    +A+ +  +  +  +  +GCD  Q 
Sbjct: 720 VVKIDRAFTQRAVDGGRARALVASIVDIAHNLGMRCVAEGVETKEQLSVIEALGCDEAQG 779

Query: 938 SHVASPLGFNSILKL 952
            + A P+  + +  L
Sbjct: 780 FYFARPVPPSDLEAL 794


>gi|187921353|ref|YP_001890385.1| PAS/PAC/Chase sensor-containing diguanylate cyclase/phosphodiesterase
            [Burkholderia phytofirmans PsJN]
 gi|187719791|gb|ACD21014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Burkholderia phytofirmans PsJN]
          Length = 1037

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/587 (25%), Positives = 266/587 (45%), Gaps = 19/587 (3%)

Query: 390  VLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
              +    ++    + E R +     S + +   D     +          G  +  + G 
Sbjct: 457  RTSGRDITERKQVEAELRIAAVAFDSMEPMMITDASATILRVNSAFTECTGYTAEEIVGQ 516

Query: 449  IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                L     +D   F+ + +    +  G  Q E   R  + + +   + I  + + NG 
Sbjct: 517  TPRVLRSGRHDD-AFFQEMWEEI--HSAGGWQGEVWDRRKNGEVYPKWLTISAVMSDNGT 573

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +  Y+G  +DITE+K + E I   AF D LT +PNR   LDRL   +  SA ++     +
Sbjct: 574  VSHYVGTHHDITERKIAEERIKELAFFDALTRLPNRTLLLDRLRQAITASARNE-ACGAL 632

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--- 625
            + ID+D +K +ND LG   GD +L  + RR+ + +   D +AR+ G+ F ++L + +   
Sbjct: 633  LFIDLDHFKTLNDTLGHDKGDLLLQQVARRLADSVLESDTVARVGGDEFVVVLGNLHKNR 692

Query: 626  --NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
               + +       +   +  P +L + E   +ASIG   +   + +  E+LK A+LAMY 
Sbjct: 693  QEAANQTEAVGERILAVLGSPYHLGKIEYRTSASIGATVFRGHQASIDELLKQADLAMYK 752

Query: 684  AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            +K RG N V  F             ++  L  A+E+++  L Y    +++   + G EAL
Sbjct: 753  SKERGRNAVRFFDPDMQTVVVQRAALEAGLRNAIEDNQFLLHY--QAQVVGTRVTGAEAL 810

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W HP+ G +  +EF+ +AEE  +I A+  ++LE     +  W  + +M  + I +N++
Sbjct: 811  VRWQHPQRGIVPPAEFIPLAEETGLIVALGSWVLEAACAQLARWAARPDMAHLTIAVNVS 870

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             +     +  + +  +I +T   P R+KL  +ESV++ N +     +  L+  GI   LD
Sbjct: 871  VQQFRKADFVDNVLTIIGRTGARPDRLKLELTESVLVDNVQDIIEKMSALKAKGIVFALD 930

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFG   S LSYL  +P D +K + S +           I R+I+ +A+++   +IA+ + 
Sbjct: 931  DFGIGYSSLSYLKRLPLDQLKIDRSFVRDVLVDSNDAVIARTIVALARSLGLGVIAEGVE 990

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE---RFPLVKNT 963
             E     L   GC   Q  +   PL       LL     R  + + T
Sbjct: 991  TEAQRDFLAAAGCYAYQGYYFCRPLPIEDFEALLNNVETRQCVAERT 1037



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 3/142 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
               ++ +  + E+       + +  +W W            +   +G            
Sbjct: 338 ASAMTKELRENEEKFRAIADCTVNWEIW-WGTDGKPRWINSAVEAYIGYTVDECMALPDF 396

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I+  D           +   RG    EFR    D    W+     P+++S G+ + 
Sbjct: 397 AGTVIYPADIPRVAPEFQKALQGLRGD-DLEFRCVRKDGSLMWLSASWVPITDSKGEFIG 455

Query: 512 YIGIANDITEQKKSLEGILCNA 533
           +     DITE+K+    +   A
Sbjct: 456 FRTSGRDITERKQVEAELRIAA 477


>gi|118581136|ref|YP_902386.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pelobacter
           propionicus DSM 2379]
 gi|118503846|gb|ABL00329.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter propionicus DSM 2379]
          Length = 858

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/572 (24%), Positives = 264/572 (46%), Gaps = 11/572 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGP 448
           +         +     R    +     I +  + +               G ++G   G 
Sbjct: 132 LRKHRQAELSLCESESRFRRILQEIPSIAFKGYGVDGTVRYWNLASELFYGYSAGEAIG- 190

Query: 449 IRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            RN L  +     R   +  +       R     E  +   D     ++     +    G
Sbjct: 191 -RNLLDLVIPEGMRAEEKRRMLRMAETGRADPPSEQCLLRRDGSRITVL-SCHAVVRRPG 248

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +     G+  DI+E+K + E +   A  D LTG+ NR  F DRL   L  +     +   
Sbjct: 249 EAPELYGLDIDISERKINEEQLEYLATHDELTGLANRALFHDRLEQSLHYAKRSGRI-VA 307

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+++D+D++K IND LG + GD +L ++ +R+  +++  D +ARL G+ F ++L      
Sbjct: 308 VLLLDLDRFKIINDSLGHSFGDRLLSAVAQRLDRVVRDTDTVARLGGDEFVLLLAEVTEP 367

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +   A  +   +A+P  +  REI ++AS+G + +       S +++NA++AMY AK  
Sbjct: 368 DDVGLLASRILHELAVPHRIEGREIVMSASLGISLYPKDSGDGSTLIRNADIAMYRAKQE 427

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG     +   ++    + + I+  L LA+E  E  L Y P + L    I G EALI+W 
Sbjct: 428 GGGVFSFYAPEMNQRAMETMEIESALRLALERGEFTLYYQPKVDLASGRISGCEALIRWL 487

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G ++ ++F+ +AEE  +I  I  ++L+   R + +W+ +  +P   + +N++++  
Sbjct: 488 HPRRGVVAPADFIPLAEETGLIVPIGTWVLKEACRQVRAWQAE-GVPIANVAVNLSARQF 546

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L   ++ ++ +T   P  ++L  +ES+VM +  +   ++  L  IG+ L+LDDFGT
Sbjct: 547 RTGDLPGLVREVLGETGLDPHLLELEMTESMVMADHAQVVAVMEELTAIGVRLSLDDFGT 606

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S  ++L + P + +K + S +           I  SII MA  +    IA+ +  E  
Sbjct: 607 GYSSFAHLSHFPINHLKIDRSFIKQIVTDPNSATIATSIIAMAHRMRLKAIAEGVETEAQ 666

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  L + GCD IQ   ++ PL  +    L++ 
Sbjct: 667 LAYLRKQGCDEIQGYLLSRPLPASEYAALVRR 698


>gi|152991498|ref|YP_001357220.1| hypothetical protein NIS_1758 [Nitratiruptor sp. SB155-2]
 gi|151423359|dbj|BAF70863.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 793

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 157/568 (27%), Positives = 270/568 (47%), Gaps = 12/568 (2%)

Query: 395 YFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +      ER ++    +  S D V   D  ++ V        + G     + G    
Sbjct: 230 RLIEAQKQAIERATVMKNVIQNSDDAVLITDHAKNIVDCNRAFEKMSGYTKEEIIGKKPE 289

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510
                 + D   ++ +  + +  ++G    E   +  D    + +  I  + +     I 
Sbjct: 290 EFLKSGLQDSSFYQKMWKNIL--KKGEWSGEIVDKRKDGSLFYALQSIFAIKDPLTNKIT 347

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y  I  DITE  K  E I   AF D LT + NR SFL  L   + L    ++    ++ 
Sbjct: 348 HYAAITKDITELAKKQETIQKLAFYDPLTKLANRVSFLQTLDEFIALGKR-ESFPFALLF 406

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K+IND LG   GD +L +  +R+  LL+  DI ARL G+ F ++    ++  K 
Sbjct: 407 IDLDNFKEINDTLGHDTGDKLLQAFVKRLKSLLREEDIAARLGGDEFVVLAPGISSPSKA 466

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGG 689
            + A  ++ +   P+ + +R ITV  SIG A +      ++E+LK A++AMY AK  +  
Sbjct: 467 LELACRLQNAFQQPLMVDDRPITVQMSIGIALFPQDAKNANELLKAADIAMYKAKEKKNR 526

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    +     ++V +K++L  A+E +EL L   P I +  +++ G EALI+W+HP  
Sbjct: 527 CVLFQENMQQEALEKVTLKQELKKAIEKNELMLYLQPKISVRTKKVEGFEALIRWNHPTR 586

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I  S+F+ +AEE  +I  +  ++ + + R +   +      P  I INI+++    ++
Sbjct: 587 GFIPPSKFIPLAEESALIIPLTEWIFQEVDRLLDQLQQNGIESP--IAINISARHFATDK 644

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +   I K       I+L  +ES VM +  ++   L +L   GI + LDDFGT  S 
Sbjct: 645 LIEQITTNIKKEYIQKGLIELEVTESAVMEDINKAMHYLQKLHSFGIKVALDDFGTGHSS 704

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P DT+K + + +       K  AI+ S I MA  +    +A+ +  +   + L
Sbjct: 705 LQYLKKLPIDTIKIDKTFIDHIINDNKDQAIVESTIEMADKLGMDTVAEGVETKEQAQFL 764

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++G DYIQ  + A P+ F  +L+ L++
Sbjct: 765 EKIGIDYIQGYYYAKPMPFEEMLEFLQK 792


>gi|152988008|ref|YP_001350574.1| motility regulator [Pseudomonas aeruginosa PA7]
 gi|150963166|gb|ABR85191.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 1410

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 148/575 (25%), Positives = 266/575 (46%), Gaps = 15/575 (2%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            V       +    +    +     S   +   D     V      + + G +   +    
Sbjct: 833  VARDISQQRRAERELRMAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSPADVLDQQ 892

Query: 450  RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L      DR     +          G  + E   +    + +   + I  + +  GD
Sbjct: 893  PRLLT----ADRQEANQLKHVLASLQHSGSWEGEILQKRKTGELYPSWVGITAIRDEEGD 948

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            ++ ++   +DI+E+K S   I   A+ D LT +PNR  F DRL T L  +  +      +
Sbjct: 949  LVSFVCFFSDISERKASERRIHRLAYYDALTHLPNRTLFQDRLHTALQQAERNGQW-VVL 1007

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            M +D+D++K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L S+ +  
Sbjct: 1008 MFLDLDRFKPINDSLGHAAGDRMLQEVATRLSACVSQDDTVARMGGDEFTLLLPSQGDRE 1067

Query: 629  ----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +    A  +   +A P  L  RE  VTASIG A         S ++KNA+ AMYHA
Sbjct: 1068 IALKRAIQVAELILGRLARPFTLEGREFFVTASIGVALSPQDGAELSLLMKNADTAMYHA 1127

Query: 685  KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K  G N+ + ++  +++   +R+ ++ DL  A+E  E  L Y P        + G EAL+
Sbjct: 1128 KEMGKNNFQFYQAEMNARALERLELESDLRRALELGEFVLHYQPQFTGDGRRLTGAEALL 1187

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W HP+ G +  SEF+ + EE+ ++  +  ++L    + + SW       P  + +N+++
Sbjct: 1188 RWQHPRRGLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVP-KVSVNLSA 1246

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +   D +L E + A++ +T   P+ ++L  +ES++M +   +  +L  L+++G+++ +DD
Sbjct: 1247 RQFADGQLGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDD 1306

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S L+YL   P D +K + S + G    E+   I R+II MA ++   +IA+ +  
Sbjct: 1307 FGTGYSSLNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVES 1366

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  +  L   GCD +Q      P+       L   
Sbjct: 1367 QAQLDFLREHGCDEVQGYLFGRPMPAEQFGMLYAS 1401



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 11/159 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLASGS 444
            +  V +       +    +  S AV    D ++  D+   RV  +   +   LG     
Sbjct: 560 SLSDVTSRKEVELSLIEREKFWSDAVQAVPDTLYIHDLNARRVIFSNHHLGQQLGYDQEE 619

Query: 445 MHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +     N W   +H +D++ +  I +   V      L  + R R  D ++HW  IR +  
Sbjct: 620 LARMGENFWETLLHPDDQEYYWRIRNLQHVVGDGLLLDSQLRWRHRDGRWHWFDIREQAF 679

Query: 503 -SNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
             + +G + R IG+A DIT         +++       A
Sbjct: 680 SRDRSGRVARLIGVAKDITFTVEANNALRENGRRYRMLA 718



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +  T   +  +  +G R  +      D+++  D   +    +P +  + G +  
Sbjct: 691 IGVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNANYVSPSVQHVFGYSPE 750

Query: 444 SM--------------HGPIRNWLPYI-H-INDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                            G +   L  + H I DR+         +     +  +      
Sbjct: 751 WALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDREKLAE-----LRENPAQHLFALDCLR 805

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           AD +   + +R+  M + +      +G+A DI++Q+++   +   A 
Sbjct: 806 ADGRKIPIELRLVLMWDEHDRFEGLLGVARDISQQRRAERELRMAAT 852



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 50/163 (30%), Gaps = 10/163 (6%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGI-------FSDGERQSLAVLGSGDIVWDWDIVR 425
           GG +LI +L+    +  +L      QG+            + + A+    + V       
Sbjct: 249 GGELLIFLLLVGVTVLTLLRLHREQQGLRAMTLASQRSLRQAATALAAIDERVLVTRADG 308

Query: 426 DRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                 P    + G++S       +   LP +      +     ++       R++ E R
Sbjct: 309 RLSYLNPQAEQLFGISSAQARQHHLLGLLPDLEPGWLSDAAGDGETRSELLPLRVRGEPR 368

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDITEQKKS 525
           V                       IL    + +  D+TE++ +
Sbjct: 369 VFTLSRHPLASHTEAAQAWTLRERILQGGQVWVLRDVTEEQHA 411


>gi|89255347|ref|NP_659900.2| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|89213301|gb|AAM54913.2| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 932

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/570 (26%), Positives = 270/570 (47%), Gaps = 7/570 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +    +          R    +    D+VW  D+    +        ++G A  
Sbjct: 330 LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 389

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G                FR   +  +   R  +  E      D +   +  R  P+ 
Sbjct: 390 EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 447

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + G ++  +G+A DITE   S + I   AF D+LTG+PNR  F +RL  ++  +A+   
Sbjct: 448 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 506

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  VM+ID+D +K IND +G  VGD++L  +  R+ + ++  D +ARL G+ F ++L +
Sbjct: 507 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 565

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +A  A  M  +      L +REI V+ SIG + + +      +++K A+ AMY 
Sbjct: 566 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 625

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G ++   +          R+ ++ DL LA+++ +L L Y P + L + +++G EAL
Sbjct: 626 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 685

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HPK G I   EF+ +AEE  +I  +  ++L                PP  I IN++
Sbjct: 686 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEACCTAAVMNADGL-PPHKIAINLS 744

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K      L + +  ++ +T      I++  +ES+++ N E     L +L   GIS+ +D
Sbjct: 745 PKQFQCPRLSQTVADVLQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISIAID 804

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           DFGT  S LSYL   P DT+K + S +  S ++   ++++I+ +A+ +   ++A+ +   
Sbjct: 805 DFGTGYSSLSYLANFPIDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVVAEGVETV 864

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K L   GC   Q  + + P+  + +L 
Sbjct: 865 DQEKFLAESGCAVAQGFYYSKPIPKSELLA 894



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +         +    E     +    D++++ +     +        IL     
Sbjct: 204 VGAMLDITERKRAEHDLKEALEFAEGIIAAIPDVLFEVNADGRYLQVWARNQEILAQRKE 263

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G +      +  +  D     L+              R+   + +  W  + +    
Sbjct: 264 VLLGKL--VRDVLPPDQADIAMLALEEA-DETGASYGRCVRIALPNGESRWFELSVARRP 320

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
           +SN   + ++ ++ DITE+K + 
Sbjct: 321 SSNHSTVTFLVLSRDITERKHAE 343



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           ++ +      V+  +     +       +  G + G + G        +           
Sbjct: 102 AVVLDAIPLPVFFKNRDGIHLGCNRAFESFSGRSKGDIIGK--TVFDLV-PAPIAETYAA 158

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           LD  +    G  QYE +    +     +++    +++  G+ +  +G   DITE+K+   
Sbjct: 159 LDEALFANGGVQQYEAKATTENGGVVDLLLSKTAITDIAGNRIGLVGAMLDITERKR--- 215

Query: 528 GILCNAFQD 536
                A  D
Sbjct: 216 -----AEHD 219


>gi|91775155|ref|YP_544911.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
            KT]
 gi|91709142|gb|ABE49070.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Methylobacillus flagellatus KT]
          Length = 1070

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 146/584 (25%), Positives = 283/584 (48%), Gaps = 18/584 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            F V+  +       + +    +        + + +   D  R+ +        + G    
Sbjct: 481  FGVMLDITDRKAAEESLNLSKQ----VFDNTSEAILIADRDRNILEVNQAYLDMTGYGRE 536

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               G     L      D       L   +  + G+   E   +    +++   + I  + 
Sbjct: 537  DCVGTYLALL------DEPAGGGQLIGNLVQQHGKWMGELLAQKRSGEYYPAWVSISTVH 590

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +++G +  Y+ +  DI+++K++ E +   A  D LTG+PNR    +R+   +  +     
Sbjct: 591  DNHGSLQNYVVVLTDISQRKQAEERLQFLATHDGLTGLPNRTLLQERMELAVLRAQRYQQ 650

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                V+ ID+D++K IND LG   GD +L  +  R+GE L+  D +AR  G+ F +++  
Sbjct: 651  C-VGVLFIDLDRFKIINDTLGHQAGDVLLQEVAGRLGECLRQTDTIARQGGDEFVVLVED 709

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  + + A  +  ++A P  L+++E+ ++ASIG + +    +  S +LKNA++AMY 
Sbjct: 710  FIEQQYLVNVARKIMHALAQPFILMQQELYISASIGISVYPDDGVDISSLLKNADMAMYR 769

Query: 684  AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G N    +      +   R+ ++  L  A+E +E  L+Y   + L ++ I+G EAL
Sbjct: 770  AKDDGKNTFHFYSADGNANSVSRLTLENSLRRALERNEFSLLYQAKLDLAEQNIIGAEAL 829

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            I+W   + G +S  +F+ +AEE  MI  I  ++L++  RD   W++ A   PI + +NI+
Sbjct: 830  IRWHSAELGMVSPQDFIPVAEETGMIIEIGEWVLQQACRDACHWQEVAGR-PIRVGVNIS 888

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            ++   ++ L + +   + ++  +P+ ++L  +ES++M N ER+  +L   R +G  + +D
Sbjct: 889  ARQFREDSLYQAISNALEESGLTPNCLELEITESMIMQNAERASQMLQHFRNLGSYVLID 948

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S L YL + P D++K + S +         +AI ++II MA +++  ++A+ + 
Sbjct: 949  DFGTGYSSLGYLKHFPIDSLKIDRSFVRDIPQDSDDMAITQAIIAMAHSLKINVVAEGVE 1008

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             +  ++ L   GCD +Q    + PL     + LL  RF   +  
Sbjct: 1009 TQAQLEFLRGQGCDQLQGYIFSRPLVVEDFVGLL--RFDTARRA 1050



 Score = 95.0 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 1/144 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I  + +     + +          V     +VW           + +  ++LG    
Sbjct: 353 VVLIIDISSRKQAEEALLQSRAEYRKLVESVKAVVWRATPEAAFTFVSQEAESLLGYPVR 412

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W+  +H +DR              +  +  E+R+RAAD +  W+   +R + 
Sbjct: 413 EWTSNTSFWVDKLHPDDRPWVVDFCARETRQLKDHV-LEYRMRAADGRTVWLQDIVRVIP 471

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +  G      G+  DIT++K + E
Sbjct: 472 DRFGKPQELFGVMLDITDRKAAEE 495



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 99/351 (28%), Gaps = 40/351 (11%)

Query: 200 SLLAIFLTIFYMV-------NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS----- 247
           + L  +L   ++         R  M +         L   +     L +L  +       
Sbjct: 34  AALGYYLLKRFIRFEPEMTRLRDLMGMVLVGAVISPLLSATSGALGL-RLFGVVPDSDLH 92

Query: 248 -GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
              L  W   +   +  +  I    +    RW         S  + +  L  ++F   + 
Sbjct: 93  VTWLQWWMGDALGIILLTPAILACFHYEPIRWTRAKLLEAVSLASMLLGLCFLAFNDLLS 152

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            A         +     + ++    +G   A LLI    L                  +I
Sbjct: 153 QAGELEAKAFLVFPLVIWAVLSFHQRGAAAASLLIVMTALWGGGG------YHGFFSMEI 206

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL------AVLGS----GD 416
              AL    +  ++ +   V            G     ER         A+  +    G+
Sbjct: 207 SNAALFNYWMFALVTVSIGV-----GLSGLHVGRLQADERLRQQLGLYNALSNAQSDAGE 261

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V   +     +     +  I G  +  +     ++L  IH +DR+         +    
Sbjct: 262 GVMVIE-DGKIIYANEAVRKIGGYDARDIS-MGSSFLSLIHPSDRERVAQHYKQRIRGEY 319

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              +YE    +   +   + +      + +    R + +  DI+ +K++ E
Sbjct: 320 TPSRYEALAISKLGKPIPIEVAAANYRDGS---ERIVVLIIDISSRKQAEE 367


>gi|261418942|ref|YP_003252624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|319765760|ref|YP_004131261.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
 gi|261375399|gb|ACX78142.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|317110626|gb|ADU93118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
          Length = 947

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 144/664 (21%), Positives = 270/664 (40%), Gaps = 15/664 (2%)

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357
            M  YY    +   R     +   +    ++  ++   +               +    A
Sbjct: 294 GMLLYYSAALSGYTRPLFDGVAAAFGQAALFPAVEVLVKDAYTAVRPAAFAAISLAETAA 353

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
             +            G     ++ +   +             +    +R       + DI
Sbjct: 354 SAESGLLSPWSSPPEG-----MMTLAQLMSTSSRDMERLHVRLQMSEQRYKSLFEHNTDI 408

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  D+     +  P    +LG     +       L YIH ND           +     
Sbjct: 409 VYSTDLHGRLTSVNPAFEQVLGYTKEEILYTNS--LKYIHPNDIPRVTRYFYRALRGNIQ 466

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E  +     +     ++  P+   +G  +   GI  +ITEQKK+ E I   A+ D 
Sbjct: 467 TYNLE--IPTKSGERLLFQMKNIPII-VDGKKVGIYGIGRNITEQKKAEEKISYLAYYDI 523

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            T +PNR  +++  +  LD +      +  V +ID+D++K IND +G   GDD+L  L  
Sbjct: 524 DTNLPNRTKWMELFSEQLDKAKQKRR-KMAVALIDLDRFKWINDSVGHYAGDDILRQLVE 582

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           RI  +L     L R  G++F ++   +  +    + A+ + + +A PI    +E  VTAS
Sbjct: 583 RIRRVLPPSAELGRFHGDKFCLLFPLKTEAQAATEAALRIVREVARPIVYEGKEFFVTAS 642

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715
           +G A +         +L++A++A+  AK  GGN VE +           ++    L  A+
Sbjct: 643 VGLAMFPDDGEDEHALLRHADMAVNMAKKGGGNRVERYCAQMNEEAMHRLEMGGHLRRAI 702

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E +EL+L Y PI+ +    +   EALI+W HPK G +   EF+ +AEE  +I  I  ++L
Sbjct: 703 EENELFLCYQPIVDVHTGAVKATEALIRWRHPKLGLVRPDEFIPLAEETGLIHEIGRWVL 762

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   R    W++      + I +N++          + ++  + ++  SPS + L  +E 
Sbjct: 763 KTACRQTKQWQEITGNNRLAIFVNVSPVQFQHERFVDNVKQALKQSRLSPSCLHLELTEH 822

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            ++     +   +  LRK+G+ + +DDFG+  S   YL  +P   +K + + +       
Sbjct: 823 SMLRYLSSTMRTMDELRKLGVGIAVDDFGSGYSSFHYLKRLPATILKIDRAFIEQLHANA 882

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI++++I M   +    IA+ +     +  L  + C Y Q      PL    +++ +
Sbjct: 883 SDEAIVKAMITMGHGLGLETIAEGVETPEQLNRLRDLQCTYAQGYVFCPPLLAEEVMRYV 942

Query: 954 KERF 957
            E+ 
Sbjct: 943 TEKQ 946


>gi|312794722|ref|YP_004027645.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
            [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181862|gb|ADQ42032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 1016

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 143/567 (25%), Positives = 268/567 (47%), Gaps = 11/567 (1%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +  + E+    +    D +W+ D     +     +  +  + +         WL + H 
Sbjct: 448  ALEEEKEKYKFLIENGSDCIWEIDFKEKNIEFYGRLKDLFDIKAVKSKNDFSAWLDFFHP 507

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +DR      L   +      L++E R+R  +  +HWM   ++   N  G   + I +  D
Sbjct: 508  DDRSTVFKKLQDAILLHEENLEFEARIRDKNGNWHWMSAHVQIFYNEEGKPEKIIAVNID 567

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             T +K+  + I   A+ D LT +PNR+ F + L   +  +  ++  +  V++IDID +K 
Sbjct: 568  WTAKKEYEQKIEYIAYYDALTSLPNRKLFEEALEDFIKKA-EEEKAQGAVILIDIDNFKD 626

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAI 635
            IND+ G   GD+ L ++ +++ E LK        AR+ G+ F ++L       ++ +   
Sbjct: 627  INDLYGHEAGDEYLKAVGQKVLEYLKNLNLNTFFARVGGDEFAVVLHGLAKKEEVIEVCT 686

Query: 636  AMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             +       I +   ER +  +AS+G + +     +  E+ +N ++A+  AK  G N  +
Sbjct: 687  QLLSIFEREIYIQKLERHLFASASMGISFYPDDGRSVKEIFRNVDMALSSAKENGKNDFQ 746

Query: 694  SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F   +      ++ I++ L  A+E  +  L Y P+I L D EI  +EAL++W  P+ G 
Sbjct: 747  IFLPFMLMKNLKKIEIEKGLKKAIETDQFELYYQPVINLKDMEIHSVEALLRWISPEKGM 806

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            IS  EF+ +AEE+ +I  I   ++E+   D+  W  +     + + IN++++        
Sbjct: 807  ISPLEFIPVAEEIGLIIKIGEMVIEKAFSDLKEWEKKGIDY-LHMAINLSARQFKIKFFE 865

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              +Q LI +    P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S L 
Sbjct: 866  NMVQKLIERYSIDPKKISFEITETGAVENFDVSLKILSFLCQMGIKFLIDDFGTGYSSLV 925

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P   VK + S ++    +++  AI+  II MA  ++  ++A+ +  +  ++ L  
Sbjct: 926  YLKRLPIGGVKIDRSFISELEVSKENKAIVEGIILMAHKLDLKVVAEGVETKRQLEILKE 985

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKER 956
            +GCD+ Q    + PL    + KLL  R
Sbjct: 986  VGCDFAQGYLFSKPLPKTEVEKLLIAR 1012



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 4/165 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           N  I  + +  L++I+      +            G  +  +   L    +  IV   ++
Sbjct: 258 NRQIVISTLYLLLIILFAASVAIFVMARINRRLEHGKQTYEKYAQLLAENANAIVLTLNL 317

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYE 482
             + +        + G  S  + G    W+   I  + R+    +       +     +E
Sbjct: 318 NGEIIYFNKFAQELTGYKSEEVVGKK--WVDIFIPPHRREYIENLFKRIAEEKILN-NHE 374

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +   +    W++     + +   +    I    DIT+ K + +
Sbjct: 375 NEIVTKNGDIKWILWNNTLIESPYLNEPMIISTGLDITQIKTTQQ 419


>gi|330985811|gb|EGH83914.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 829

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 155/563 (27%), Positives = 267/563 (47%), Gaps = 13/563 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E+  LA      + + V   D  +           I G +     G     L  
Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +    F   +   +    G  Q E   R  + + +   + I  + N       ++ +
Sbjct: 315 GQHD--SAFYASMWYQLAAD-GHWQGEISNRRKNGELYPSWLTINAVRNKANLTTHFVAV 371

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+  K +   +   A  D LTG+PNR  F  RL + L  S    +L   V+ +D+D+
Sbjct: 372 FADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSL-GAVLFLDLDR 430

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L            A 
Sbjct: 431 FKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIAN 490

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES+
Sbjct: 491 KLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVESY 550

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +  S+R+ ++++L  A++ ++L L Y P I L+   ++G EALI+W+HP +G++ 
Sbjct: 551 TCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDVP 610

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE  MI  I  ++LE+  + +  WR     P   + +N+A   L    L E 
Sbjct: 611 PEHFIPLAEENGMILQIGEWVLEQACQQMGKWRK-TCQPFGPVSVNLAGAQLRQTNLVEH 669

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++     P  ++L  +E  +M   + +  +L +L+K+G+ L +DDFGT  S LSYL
Sbjct: 670 IEQLLADNGLEPGCLQLEITEHFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSYL 729

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LTR G
Sbjct: 730 KRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSMQLTVIAEGVENSEQQQFLTREG 789

Query: 932 CDYIQDSHVASPLGFNSI-LKLL 953
           C+ IQ   ++ PL       + L
Sbjct: 790 CEQIQGYIISLPLQPEEFSARFL 812



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +        I G + 
Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ + DR      L      R     +  R+R  D       +   P
Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIKLCELSSHP 237

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  D L  + IA DITE ++  E +   A 
Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268


>gi|77461371|ref|YP_350878.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens Pf0-1]
 gi|77385374|gb|ABA76887.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Pseudomonas
            fluorescens Pf0-1]
          Length = 1248

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 158/574 (27%), Positives = 265/574 (46%), Gaps = 12/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +  +         +    ++ +     + + V   D  +           I G +     
Sbjct: 665  MLTIARDITERHLMQEKLQQAATVFESTAEGVLITDTQQHISAVNRAFTEITGYSESEAL 724

Query: 447  G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   R     +H  D   +  +         G  Q E   R  + + +   + I  + N 
Sbjct: 725  GHTPRLLASGLH--DSAFYAAMWHQLTDE--GHWQGEISNRRKNGELYPSWLTISAVRNR 780

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            +  I  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL T L+ S  ++  +
Sbjct: 781  DKFITHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRTLFESRLLTALN-SQQENGGQ 839

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F I+L    
Sbjct: 840  GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLQ 899

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                  + A  +      P    E E  ++ASIG + +       + ++KNA+ AMY +K
Sbjct: 900  QPGDADNIATKLLNCFGAPFQAGEHEFFISASIGTSLYPRDGCDVATLIKNADAAMYRSK 959

Query: 686  HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G N VES+     +  S+RV ++ +L  A+E  ELYL Y P I L D  +VG EALI+
Sbjct: 960  AKGRNRVESYTRDLTAQASERVALEHELRRAIEREELYLYYQPKISLDDHSLVGAEALIR 1019

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP +G +    F+ +AEE  MI  I  ++LE   R +  W          + +N+A  
Sbjct: 1020 WRHPNFGEVPPEHFIPLAEENGMILQIGDWVLETACRQMFEWGQIYESLG-PLSVNLAGA 1078

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L    L   ++ L+      P  ++L  +E+ +M   E +  +L +L+ +G+ L +DDF
Sbjct: 1079 QLRQPNLLGRIEQLLKDNRLRPELLQLEITENFIMSQAEEALAVLHQLKHLGVQLAIDDF 1138

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P D +K + S + G        AI+R+II + ++++ T+IA+ +  +
Sbjct: 1139 GTGYSSLSYLKRLPLDILKIDQSFVRGLPDDPHDAAIVRAIIALGRSMQFTVIAEGVETQ 1198

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
               + L   GC+ IQ   V+ PL         L+
Sbjct: 1199 AQQQFLAAEGCEQIQGYIVSLPLPPEEFAATFLR 1232



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +   +L+  ++ +VI I   +   +       Q + S        V     I W+
Sbjct: 268 LLIYGLPGLSLLVIVLAVVIRINRRLSSEIARRIDLEQELRSSEYHYRGLVESLSAIAWE 327

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             I        +P    +LG            W   IH  D    ++  D  V   R   
Sbjct: 328 ARISDFTYSYVSPHAEDLLGYPLSHWL-IPGFWRNIIHPADLTRAQSFCDHEVLAGRDH- 385

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD +  W+   +  +   +G      G+  DI+E K++ E
Sbjct: 386 SLDYRVITADGRCLWVRDIVSLI--EHGHEPVMRGLMIDISETKRTEE 431



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVIQH 389
           +  W +  +    L       + N  +      G V   ++               V++ 
Sbjct: 487 LNIWGIPGVGPGLLQRLQAGSIRNLEMPFRRNNGQVFTGLISAEPFELDTTPALVVVVRD 546

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGL-ASGSMHG 447
           +       Q + +  E+ + A   S D +          +      + I G  ++ S+  
Sbjct: 547 ITQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSDGLLLEVNEGFSRITGFNSAMSVDR 606

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSN 506
              +   ++++N+R     +L     +R G ++ +   +R +D Q     +  RP+    
Sbjct: 607 SALDLGIWVNLNERKQMLDLL-----HRDGFVRDFSCHIRRSDGQIRLCEVSSRPL--PI 659

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           GD    + IA DITE+    E +   A 
Sbjct: 660 GDEDCMLTIARDITERHLMQEKLQQAAT 687


>gi|241763480|ref|ZP_04761533.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241367321|gb|EER61652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 830

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 134/589 (22%), Positives = 262/589 (44%), Gaps = 17/589 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDI 434
            + +   V+Q V      ++ +                 ++++ +  D        +  +
Sbjct: 243 GMRVEMGVVQDVTEEHRSAEQLREQLLFIQRIASRIPGFIYEYRMHNDGASSVPYISDAV 302

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
              +G+    +       +  +  +D  + R    + +       Q E+RV   D    W
Sbjct: 303 REFMGVNPEDVMRDHGLLMRSVVPDDAAHVRRSAVASLRN-LAPWQCEYRVSMPDGSVRW 361

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
            I    P    +G ++ + G   DIT++K++ + I   AF D LTG+PNR+  LDRL   
Sbjct: 362 HITNAIPHREPDGSVVSH-GFTMDITDRKRAEQEIERLAFYDALTGLPNRRMLLDRLQRA 420

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  ++        ++ ID+D +K +ND LG  +GD +L  +  R+   ++  D +AR  G
Sbjct: 421 VAATSRTQQF-GALLFIDLDNFKDLNDTLGHDMGDHLLSQVAARLLACVRETDTVARFGG 479

Query: 615 NRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           + F ++L +          +    A  +  S+  P  L  ++   T SIG   +   +++
Sbjct: 480 DEFVVMLETLRPELTEAASQAEIVAEKLLASLNQPFALGGQQHYSTPSIGITLFGDERLS 539

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
             E+LK A+LAMY AK  G N    F      +      ++ DL   +   EL + Y P+
Sbjct: 540 VDELLKRADLAMYQAKGAGRNTQRFFDPDMQAAVNARSNLEADLRQGLARGELCVYYQPV 599

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +      ++G+EAL++W HP  G IS ++F+ +AE+  +I  +   +L+     +  W +
Sbjct: 600 VDHRA-RLLGVEALVRWRHPVRGMISPADFIPLAEQTGLILPLGQQVLQTACGQLQRWGE 658

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +     + + +N++++          +   +      P ++KL  +ES+++G+ E +   
Sbjct: 659 RKQTRHLSVSVNVSARQFRQPGFVAEVLQTLQGCGADPRKLKLELTESLLLGDVEDTIAR 718

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905
           + +L++ G+   LDDFGT  S LSYL  +P D VK +   +    +     AI+R+I+ +
Sbjct: 719 MEQLKREGVGFALDDFGTGYSSLSYLKRLPLDQVKIDQGFVRDVLTDPNDAAIVRTILAL 778

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A++++  ++A+ +     +  L   GC+  Q      P     I   L 
Sbjct: 779 AQSLDLEVVAEGVETTGQLAFLRLHGCEGFQGYLFGRPGPVEDIDAYLS 827



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 12/181 (6%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL--AVLG- 413
            +   L    +    +   V  V  +               +      E+  +   + G 
Sbjct: 94  VLAWELSARRVAGCSIMVTVRDVSEVETLRAALAACERSLEETRRELREQSDVFNTMEGL 153

Query: 414 SGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
           +    W    D     +  +P +  I G        P R  +  I   DR  F       
Sbjct: 154 ARTGHWRRIEDPGETVLLWSPGLCDIAGFDRQEWVSPERA-VSGILPEDRHVFEKA---- 208

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
              +      E+R R  D +  WM  R+R   + +G  +   G+  D+TE+ +S E +  
Sbjct: 209 -REKVAGADIEYRWRRPDGEVRWMRSRVRRARSGDGMRVEM-GVVQDVTEEHRSAEQLRE 266

Query: 532 N 532
            
Sbjct: 267 Q 267


>gi|220933826|ref|YP_002512725.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995136|gb|ACL71738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1082

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 138/559 (24%), Positives = 259/559 (46%), Gaps = 9/559 (1%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             I       +     + + V   D     ++       + G ++  + G   + L     
Sbjct: 517  RIEESLRLHAQVFDTATEGVMIADARGRILSVNRAFEQVTGYSAEEVVGRNPSILSS-GR 575

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D+  +R + D+      G    E   R  D + +   + I  ++  NG+   ++ + +D
Sbjct: 576  QDKAFYRRMWDTIK--GEGIWSGEIWNRRKDGEIYPEWLTISSIAGPNGEASHFVAVFSD 633

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT QK+S + I   A  D LTG+ NR  F DRL   + ++  +      ++++D+D+++ 
Sbjct: 634  ITAQKRSEQEIDFLANHDPLTGLANRNLFEDRLAHAISMAGRNGQ-HVGLLLVDLDRFRL 692

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND +G   GD +L    RR+G  ++  D +ARL G+ FGIIL    ++      A  + 
Sbjct: 693  INDGMGHGPGDALLRETGRRLGHCVRDSDTVARLGGDEFGIILEGLADAADAGMQAERIL 752

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            +++  P+ L  +E+  T SIG A + +    ++ +L++A+ AM  AK  G N+ + +   
Sbjct: 753  EAMRAPLRLGGQELFCTVSIGIAVFPADGTDAATLLRHADTAMALAKREGRNNFQFYTHA 812

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     R+ I+  L  A+E  EL L Y PI+      I  +E+L++W HP+ G +S   
Sbjct: 813  LTEAVFSRLNIETGLRHALERDELRLHYQPILDAASGRIAAMESLMRWQHPERGLVSPGV 872

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AE+  +I A+  + L      + +W D     P+ + +NI +         E +  
Sbjct: 873  FIPVAEQSDLILALGRWALVSACAQVRAWSDAGL-EPVPVSVNIPACHFRQPGFVEEVLG 931

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +T   P  + +  +ES +M     +   + RLR  G+ + +DDFGT  S L YL   
Sbjct: 932  VVRETGVQPQSLIIELTESALMEPVSLAEERIRRLRDTGVVVAIDDFGTGYSSLGYLQRF 991

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              + +K + S ++G    E   AI  ++I ++ ++   ++A+ +  +  +  L   GCD 
Sbjct: 992  HVNYLKVDRSFVSGLPGDENARAITEAVIGVSHSLGLQVVAEGVETQAQLDHLRATGCDK 1051

Query: 935  IQDSHVASPLGFNSILKLL 953
            +Q      P+       LL
Sbjct: 1052 VQGYLTGRPVTAEVAATLL 1070



 Score = 59.2 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 8/161 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           ++ + V         + +   RQ+  +    + ++  D         P    + G + G 
Sbjct: 375 SLQREVEQRRQAEAEVLAQSRRQAQVLEAVDEAIFGLDADCRVEFANPAAEALAGCSIGQ 434

Query: 445 MHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQ----YEFRVRAADNQFHWMIIRI 499
           M G   + +  I  +D+       D   +      +     ++  +   D +   +    
Sbjct: 435 MRGQRLSGVLQI-RDDQGRSAWEPDGDCLAEDPMPVSIRRAFDQTLYHRDGRVLVVDYAF 493

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-QDNLT 539
           RP+    G +   +    DIT +K+  E +  +A   D  T
Sbjct: 494 RPIL-EGGQVRGGVFSCRDITGRKRIEESLRLHAQVFDTAT 533


>gi|251798349|ref|YP_003013080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Paenibacillus sp. JDR-2]
 gi|247545975|gb|ACT02994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Paenibacillus sp. JDR-2]
          Length = 1095

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 146/578 (25%), Positives = 285/578 (49%), Gaps = 15/578 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +++ + +         +     +    V  S   V+        +   P +  +LG    
Sbjct: 366 YSIAKDITTKKQAENALIEAESKYRSLVEKSIVGVYIIQ-KNIILYANPYLIDMLGYKEA 424

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +     +    ++ +D    +  +   +      +++  RV  A+ +   + +    + 
Sbjct: 425 IIG---MSIWDIVYPDDYSVVKQNIQ-ILYNETDAIRHPLRVLTAEGKLLDVEMYSNRIM 480

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G     IG   D+TE+K++ E     A+ D+LT +PNR+ F + L   L+ + T   
Sbjct: 481 -YQGSPA-VIGTILDVTERKRAEELNAFLAYHDSLTELPNRRKFEEMLENALETAKTARR 538

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               VM +D+D++K IND LG AVGD +L++ ++R+ E ++  D  AR+ G+ F +IL  
Sbjct: 539 -HFAVMYLDMDRFKYINDSLGHAVGDQLLIAFSKRLQEQIRETDFAARMGGDEFTVILPH 597

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++    + A  + +    P  + + E+ +T SIG + + +    SS ++KNA+ A++ 
Sbjct: 598 IRDNNSAIEVARRIIERTREPFYIEDYELFITTSIGISIYPNDGDDSSTLMKNADSALFR 657

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N  + F   ++        +++DL  A++  EL + Y P + +   EIVG EAL
Sbjct: 658 AKDLGKNGYQIFTSSMNVQTYKVFTLEKDLRKAIQRDELEMYYQPKVNIHTGEIVGAEAL 717

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+HP+WG +S +EF+ I+EE  +I ++  ++   + R    W+  A + PI I IN+ 
Sbjct: 718 IRWNHPEWGLVSPNEFIPISEETGLILSLGNWVKRTVCRQNKEWQ-LAGLKPIPISINVT 776

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +K  L  +  + +Q ++++T   P  +++  +ES ++ N E     L  L K+G++++LD
Sbjct: 777 AKRFLSKDFMDAIQQILAETGLEPHYLEIEITESSLLENAETVMHTLDSLNKLGVTISLD 836

Query: 862 DFGTKCSLLSYLGYIP--FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917
           DFGT  S LSYL       + +K + S +    +     AI+ +II +A+++  +++A+ 
Sbjct: 837 DFGTGYSSLSYLKRFKHTINILKIDRSFIHDLHQGSDDNAIISAIIQLAQHMNMSVVAEG 896

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +     +  L  + CD +Q    + P+   +  +LLK 
Sbjct: 897 VETGEQLHILKLLKCDLVQGYLFSRPVQAEAFAQLLKR 934



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +R    +       +  D+  + +        + G           ++  +I+  D + 
Sbjct: 140 EQRYITLLKNMFSAAFIIDLQGNILDVNDAAVKLTGYNKQE----HVHFSQFINPEDLEQ 195

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                   +      L ++  +   +     ++  + P+   +  I   IGI+NDI+++ 
Sbjct: 196 AMAYNQRALEGET--LSFQISILHKNGHNVDVMTTLSPIYMHD-QITGIIGISNDISDET 252

Query: 524 KSLE 527
           ++ +
Sbjct: 253 RNKQ 256



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q    + +R       + D +  +D+  + +     +  ILG +   +     N+   +
Sbjct: 255 KQLFQINKQRYESLFEQNPDAISYFDLNGNFMDCNSALENILGYSREELL--YSNYSHLV 312

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +RD  R   D  +       +             +M +   P++  +  I+    IA
Sbjct: 313 AEYERDRARFYFDQALQGTVQSYELVC--LHKQGHLVYMKLTKLPIT-VDNRIVGIYSIA 369

Query: 517 NDITEQKKSL 526
            DIT +K++ 
Sbjct: 370 KDITTKKQAE 379


>gi|257483091|ref|ZP_05637132.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331011675|gb|EGH91731.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 829

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 155/564 (27%), Positives = 268/564 (47%), Gaps = 15/564 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   D  +           I G +     G   R    
Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   + ++         G  Q E   R  + + +   + I  + N       ++ 
Sbjct: 315 GQH--DSAFYASMWHQLAA--DGHWQGEISNRRKNGELYPSWLTINAVRNKANLTTHFVA 370

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL + L  S    +L   V+ +D+D
Sbjct: 371 VFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLSALLHSEESGSL-GAVLFLDLD 429

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L            A
Sbjct: 430 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIA 489

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 490 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 549

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +     +  S+R+ ++++L  A++ ++L L Y P I L+   ++G EALI+W+HP +G++
Sbjct: 550 YTCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDV 609

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  + +  W      P   + +N+A   L    L E
Sbjct: 610 PPEHFIPLAEENGMILQIGEWVLEQACQQMGKWHK-TCQPFGPVSVNLAGAQLRQTNLVE 668

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+K+G+ L +DDFGT  S LSY
Sbjct: 669 HIEQLLADNGLEPGCLQLEITENFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSY 728

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LTR 
Sbjct: 729 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSMQLTVIAEGVENSEQQQFLTRE 788

Query: 931 GCDYIQDSHVASPLGFNSI-LKLL 953
           GC+ IQ   ++ PL       + L
Sbjct: 789 GCEQIQGYIISLPLQPEEFSERFL 812



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +        I G + 
Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ + DR      L      R     +  R+R  D       +   P
Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIKLCELSSHP 237

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  D L  + IA DITE ++  E +   A 
Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268


>gi|56476428|ref|YP_158017.1| hypothetical protein ebA1830 [Aromatoleum aromaticum EbN1]
 gi|56312471|emb|CAI07116.1| hypothetical protein ebA1830 [Aromatoleum aromaticum EbN1]
          Length = 815

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 163/692 (23%), Positives = 294/692 (42%), Gaps = 24/692 (3%)

Query: 269 LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328
           +   L   R          S     A    ++    ++      +T A +          
Sbjct: 130 VRRPLLLERNEIGFLQFGVSVSVLAAARKAITEQGAVIALVEILLTFALLSGIGFLLTRK 189

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
                            L+          +  RL  D             V+        
Sbjct: 190 LSR--------------LLASSQAIAEGRLNHRLPEDGHDELSRLSQHFNVMAANLQD-- 233

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +      +  + +  +R  LA+ G+ D +WDWDI    V  +P    I GL++      
Sbjct: 234 RIGELQDTAARLKASEQRYELAIQGAHDGLWDWDIAAGSVYCSPRCCEITGLSADRPLQS 293

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             + L  IH  D   +R  L   +     + + E+R+R  D  + W++ R   +   +G 
Sbjct: 294 PTDILGRIHPLDVSAYRNELVQHLKGNSAQFKAEYRMRQHDGSYCWVMKRGVALRGPHGR 353

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPT 567
             R  G  +DI   K +   +  +A  D+LTG+PNR  FL+ + + L       ++    
Sbjct: 354 AFRMAGSISDIHLHKLAQMQLQFDALHDSLTGLPNRALFLEHVHSALGQQQRRANHFGFA 413

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+++++ +ND  G A GD++L  +   I   L+  D+ AR+ G++F ++L   ++ 
Sbjct: 414 VLAIDLERFRLVNDSFGHAAGDELLKKVAEAIRATLRQGDVAARVGGDQFALLLNGIDDP 473

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH- 686
            +      A+R++IA P  L    +     IG A  T        +L++A+ A+  A+  
Sbjct: 474 AESLRLVEALRENIAKPTWLAGHTLYPKCRIGVALSTDH-DDGEALLRDADNALQQAREG 532

Query: 687 --RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
              G   +    + +     + ++ +L  A+ N  L + + PI+ L D  I   EAL++W
Sbjct: 533 GCEGRVAMFHASMHTHALQTLRLEGELRTALRNDGLAVHFQPIVALADGSISSFEALVRW 592

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASK 803
            HP  G ++   F+ +AE L +I  +++ +L R    ++ W+ +AN  P+  + +N+++ 
Sbjct: 593 PHPTEGMLAPDLFIPLAETLGLIHELDMLVLRRACEHLLQWQRRANGEPVPRVSVNLSAL 652

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +L   + A + +    P  +++  +ESV+      +  +L RLR IG+S+ +DDF
Sbjct: 653 QFSRPDLAGEIIAEVRRHGLPPGLLRVEVTESVLAETSGPATQVLQRLRDIGMSVLIDDF 712

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  IP D VK +GS +           I+   I +A ++   ++A+ I   
Sbjct: 713 GTGYSALSYLHTIPCDLVKLDGSFVRSLEHDERLRKIVARSIELAHDLGIRVVAECIETP 772

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                L  MGCDY Q  H + PL   +   LL
Sbjct: 773 EQDALLRAMGCDYGQGYHYSRPLDPLAAEHLL 804


>gi|152998686|ref|YP_001364367.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151363304|gb|ABS06304.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1074

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 148/593 (24%), Positives = 281/593 (47%), Gaps = 15/593 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 470  PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529

Query: 429  TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H     +F T +   +    G+ + E   + 
Sbjct: 530  LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             + Q +   + I  + N  G I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F
Sbjct: 586  KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + ++  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 646  NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             + R+ G+ F +IL    N L I   A  + ++++MP +L +REI ++AS G   +    
Sbjct: 705  FITRIGGDEFVLILPRLTNELAIEHMATRIIETLSMPFDLNDREIQISASFGIGVYPEDG 764

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 765  LDVSSLTRNTETAMYQAKDAGRNNFKYFTAGMNQAMFARMELEQRLRRAVAQNEFALHYQ 824

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +    +  +EALI+W  P +G I   +F+ +AEE  +I+ +  ++L +   D+  W
Sbjct: 825  PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++ +  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 885  QKSG--LKINVAINVSGRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R +G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 943  HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +I+ M +++E  ++A+ I  E     L  +GC + Q   ++ PL F+ I  LL
Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055


>gi|71909355|ref|YP_286942.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848976|gb|AAZ48472.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 722

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/596 (25%), Positives = 270/596 (45%), Gaps = 21/596 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           ++I +       Q        S  +          V  S D+++  D           + 
Sbjct: 127 MIIAVERALVHRQRKKEHALISAQMQHSERLHRFLVEQSPDMIFTLDPQGRFTFINGRVN 186

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA------- 488
            +LG   G + G   ++   +   D ++ +          R     E R R         
Sbjct: 187 ALLGYTPGELTGQ--HYSQVVDSRDYEHVQYAFIERRVGERATSNLEVRFRRKPSSPALR 244

Query: 489 DNQFHWMIIRIRPMSNSN--GDILRYIGI---ANDITEQKKSLEGILCNAFQDNLTGIPN 543
           +      I+  + +  +   G    ++G    A DI+E+KK+ E I   AF D LT +PN
Sbjct: 245 NGAVVTSILSSQGVYETQQFGQPSAFLGTSGVARDISERKKAEETITFQAFHDLLTKLPN 304

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  FLDRL   +  ++  +  +  VM +DID++K +ND  G  VGD +L     R+   L
Sbjct: 305 RILFLDRLEMAIAQASRREE-KLAVMFLDIDRFKLVNDTYGHQVGDQLLREFAARVRRCL 363

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D LAR  G+ F  +L +  N       A  +      P  + E +   T SIG A +
Sbjct: 364 RTGDTLARQGGDEFTALLPTLTNRDDANVVAEKILSETRRPFVVAETQFLATTSIGIAIY 423

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENS-EL 720
                 + ++++ A++AMY  K +G N    F+     +   R+ I+ DL  A++   + 
Sbjct: 424 PDDGTNAQDLIRCADMAMYQVKAQGKNGYVVFQEHMHTAHLDRLSIENDLRKALKEGNQF 483

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L + P I       VG+EALI+W HP+ G IS   F+ IAEE  +I AI+ ++L     
Sbjct: 484 ELHFQPQIDATVGRAVGVEALIRWHHPREGLISPEIFIPIAEETGLIIAISDWVLREACA 543

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +   R+Q     + I +N++ ++    +L E ++  + +   SP  +++  +ES++M +
Sbjct: 544 QLAHLREQGFGT-LRIGVNLSPREFDRADLLERIRIPLDEFGISPESLEIEITESLLMKD 602

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            E     + RLR  G+ +++DDFGT+ S L+YL     + +K + S +     ++   AI
Sbjct: 603 VENIVAQVKRLRSTGVHVSIDDFGTRYSSLNYLRRFSVNRIKIDQSFVRDLQTSQDSYAI 662

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +++++ +A+N    +I + +  E  +  L ++GC  +Q    + PL    +++ LK
Sbjct: 663 IQAMVGIARNFNLHVIVEGVETEHQVAVLGQLGCHEMQGYFFSRPLPARQLVEFLK 718


>gi|330938481|gb|EGH42084.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 828

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 154/561 (27%), Positives = 261/561 (46%), Gaps = 14/561 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 313

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 314 GQH--DSAFYAAMWHQLAAE--GHWQGENSNRRKNGELYPSWLTISAVRNKDDLLTHFVA 369

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL   L  S    +L   V+ +D+D
Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  V D +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 429 RFKHINDSLGHPVCDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLIKNADAAMYRSKAKGRNRVES 548

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L    + G EALI+W+HP +G +
Sbjct: 549 YTCDLSEQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGEV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E
Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L +DDFGT  S LSY
Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQLAIDDFGTGYSSLSY 727

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S + G  E     AI+R+II + ++++ T+IA+ +      + LT  
Sbjct: 728 LKRLPLDILKIDQSFVRGLPEDTHDAAIVRAIIALGRSLQLTVIAEGVENSEQQQFLTSE 787

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GC+ IQ   V+ PL       
Sbjct: 788 GCEQIQGYIVSLPLDAEEFRA 808



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +          G + 
Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ +++R      +      +        R+R  +       +  +P
Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIERMKKHGFVK----DMRVRIRHNNGDIRLCELSSQP 236

Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             ++  +      + I  DITE ++  E +   A 
Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267



 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +       + +       D +    +     +          GL    + G     L  
Sbjct: 10  REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGLPLDEVIGKTPTELNL 69

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    ++  +P    +  I   + 
Sbjct: 70  WAVPGIGSKVLLQL-----QTDDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122

Query: 515 IANDITEQK------KSLEGILCNAFQ 535
           I  DIT+ K      +  E     AF 
Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149


>gi|190894121|ref|YP_001984415.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
 gi|190699782|gb|ACE93865.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 932

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/570 (26%), Positives = 270/570 (47%), Gaps = 7/570 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +    +          R    +    D+VW  D+    +        ++G A  
Sbjct: 330 LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 389

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G                FR   +  +   R  +  E      D +   +  R  P+ 
Sbjct: 390 EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 447

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + G ++  +G+A DITE   S + I   AF D+LTG+PNR  F +RL  ++  +A+   
Sbjct: 448 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 506

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  VM+ID+D +K IND +G  VGD++L  +  R+ + ++  D +ARL G+ F ++L +
Sbjct: 507 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 565

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +A  A  M  +      L +REI V+ SIG + + +      +++K A+ AMY 
Sbjct: 566 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 625

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G ++   +          R+ ++ DL LA+++ +L L Y P + L + +++G EAL
Sbjct: 626 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 685

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HPK G I   EF+ +AEE  +I  +  ++L                PP  I IN++
Sbjct: 686 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEACCTAAVMNADGL-PPHKIAINLS 744

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K      L + +  ++ +T      I++  +ES+++ N E     L +L   GIS+ +D
Sbjct: 745 PKQFQCPRLSQTVADVLQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISIAID 804

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           DFGT  S LSYL   P DT+K + S +  S ++   ++++I+ +A+ +   ++A+ +   
Sbjct: 805 DFGTGYSSLSYLANFPIDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVVAEGVETV 864

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K L   GC   Q  + + P+  + +L 
Sbjct: 865 DQEKFLAESGCAVAQGFYYSKPIPKSELLA 894



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +         +    E     +    D++++ +     +        IL     
Sbjct: 204 VGAMLDITERKRAEHDLKEALEFAEGIIAAIPDVLFEVNADGRYLQVWARNQEILAQRKE 263

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G +      +  +  D     L+              R+   + +  W  + +    
Sbjct: 264 VLLGKL--VRDVLPPDQADIAMLALEEA-DETGASYGRCVRIALPNGESRWFELSVARRP 320

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
           +SN   + ++ ++ DITE+K + 
Sbjct: 321 SSNHSTVTFLVLSRDITERKHAE 343



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           ++ +      V+  +     +       +  G + G + G        +           
Sbjct: 102 AVVLDAIPLPVFFKNRDGIHLGCNRAFESFSGRSKGDIIGK--TVFDLV-PAPIAETYAA 158

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           LD  +    G  QYE +    +     +++    +++  G+ +  +G   DITE+K+   
Sbjct: 159 LDEALFANGGVQQYEAKATTENGGVVDLLLSKTAITDIAGNRIGLVGAMLDITERKR--- 215

Query: 528 GILCNAFQD 536
                A  D
Sbjct: 216 -----AEHD 219


>gi|327193499|gb|EGE60393.1| two-component sensor histidine kinase protein [Rhizobium etli
           CNPAF512]
          Length = 932

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/570 (26%), Positives = 270/570 (47%), Gaps = 7/570 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +    +          R    +    D+VW  D+    +        ++G A  
Sbjct: 330 LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 389

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G                FR   +  +   R  +  E      D +   +  R  P+ 
Sbjct: 390 EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 447

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + G ++  +G+A DITE   S + I   AF D+LTG+PNR  F +RL  ++  +A+   
Sbjct: 448 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 506

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  VM+ID+D +K IND +G  VGD++L  +  R+ + ++  D +ARL G+ F ++L +
Sbjct: 507 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 565

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +A  A  M  +      L +REI V+ SIG + + +      +++K A+ AMY 
Sbjct: 566 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 625

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G ++   +          R+ ++ DL LA+++ +L L Y P + L + +++G EAL
Sbjct: 626 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 685

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HPK G I   EF+ +AEE  +I  +  ++L                PP  I IN++
Sbjct: 686 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEACCTAAVMNADGL-PPHKIAINLS 744

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K      L + +  ++ +T      I++  +ES+++ N E     L +L   GIS+ +D
Sbjct: 745 PKQFQCPRLSQTVADVLQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISIAID 804

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           DFGT  S LSYL   P DT+K + S +  S ++   ++++I+ +A+ +   ++A+ +   
Sbjct: 805 DFGTGYSSLSYLANFPIDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVVAEGVETV 864

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K L   GC   Q  + + P+  + +L 
Sbjct: 865 DQEKFLAESGCAVAQGFYYSKPIPKSELLA 894



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 3/143 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +         +    E     +    D++++ +     +        IL     
Sbjct: 204 VGAMLDITERKRAEHDLKEALEFAEGIIAAIPDVLFEVNADGRYLQVWARNQEILAQRKE 263

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G +      +  +  D     L+              R+   + +  W  + +    
Sbjct: 264 VLLGKL--VRDVLPPDQADIAMLALEEA-DETGASYGRCVRIALPNGESRWFELSVARRP 320

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
           +SN   + ++ ++ DITE+K + 
Sbjct: 321 SSNHSTVTFLVLSRDITERKHAE 343



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 11/129 (8%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           ++ +      V+  +     +       +  G + G + G        +           
Sbjct: 102 AVVLDAIPLPVFFKNRDGIHLGCNRAFESFSGRSKGDIIGK--TVFDLV-PAPIAETYAA 158

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           LD  +    G  QYE +    +     +++    +++  G+ +  +G   DITE+K+   
Sbjct: 159 LDEALFANGGVQQYEAKATTENGGVVDLLLSKTAITDIAGNRIGLVGAMLDITERKR--- 215

Query: 528 GILCNAFQD 536
                A  D
Sbjct: 216 -----AEHD 219


>gi|326314856|ref|YP_004232528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371692|gb|ADX43961.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1499

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 139/626 (22%), Positives = 252/626 (40%), Gaps = 17/626 (2%)

Query: 342  PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
             A +    +      +   +    +            +++    +     A     Q   
Sbjct: 878  VARLGAQAYVGLQLRSAEGQPIGFVFVVFREPLQQPGMVISTLRIFAARAAAEMARQASD 937

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +   RQ+  +  + D +   D+             + G       G   +    ++ + +
Sbjct: 938  AHIRRQASLLDKARDAIIVRDLDHHITFWNEGAERLYGWTREEAMGQ--SIATLLYQDTQ 995

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +  R    +     +G    E      D +   +  R   +    G     + I  DI +
Sbjct: 996  EFLRATQAT---QEQGEWAGEIVQFHRDGRRLDVEGRWTLVQGEQGQPDSILAINTDIGQ 1052

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K +   I   AF D+LTG+PNR   +DR+   L  +         ++ ID+D +K +ND
Sbjct: 1053 RKATEREIQRLAFYDSLTGLPNRMLLMDRMRHALATAQRRRQG-GALLFIDLDNFKTLND 1111

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636
             LG   GD +L  +  R+   ++  D +ARL G+ F +++   +                
Sbjct: 1112 TLGHDQGDVLLQQVAARLNTCVRSVDTVARLGGDEFVVMIEGLSPHPDDLALSARTVGEK 1171

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   +A P  L       T SIG A +      T  E+LK A+LAMY AK  G N +  F
Sbjct: 1172 ILAVLATPYVLQGYHYRSTPSIGVAPFGDGRASTVGELLKQADLAMYQAKTAGRNTLRFF 1231

Query: 696  RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                         ++ DL  A+   +  L Y P I      + G+EAL++W HP+ G +S
Sbjct: 1232 DPGMQAVVTARAELENDLRTALAREQFMLHYQPQIDHRGG-VTGVEALVRWPHPQRGMVS 1290

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              EF+ +AEE  ++  +  ++L      +  WR       + + +N++S+        E 
Sbjct: 1291 PGEFIPLAEETGLVLPLGRWVLHTACAQLARWRHVPGRGHLSMAVNVSSRQFHHEAFVED 1350

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +   I+ T    SR+KL  +ES+ + + E +   +  LR  G+  +LDDFGT  S LSYL
Sbjct: 1351 VVRAITATGAPASRLKLELTESLFVEDMETTIATMAALRSHGVGFSLDDFGTGYSSLSYL 1410

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              +P D +K + S +          AI+ +II +++++   +IA+ +        L + G
Sbjct: 1411 KRMPLDQLKIDQSFVRDLLADPNDAAIVDTIIALSRSLGLDVIAEGVETAEQRSRLEQAG 1470

Query: 932  CDYIQDSHVASPLGFNSILKLLKERF 957
            C   Q    + PL   ++   L ++ 
Sbjct: 1471 CRAYQGYFFSRPLPETALEDFLVQKL 1496



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 73/201 (36%), Gaps = 2/201 (0%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
               A  +  +          + +    R   +  + ALV      + L+     +  +A
Sbjct: 109 RMRMAACMPISTADGLTLGAVVILDAAPRHLEESQREALVAIASQAMALLELRRQRRGMA 168

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +    ER  L    + D +WDW++  D +     +  + G+   ++     +W
Sbjct: 169 QRAQERAL--SEERFHLVARATADAIWDWNLTDDSMWWNEGMEVLFGVPLHTLPHDSTSW 226

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +H  D D     + + +         E+R R  D  + W+  R   + ++ G  LR 
Sbjct: 227 TQRLHPEDSDRVLESIHAAIEGDALHWMDEYRFRRQDGTYAWIRDRGFVIRDAQGQGLRM 286

Query: 513 IGIANDITEQKKSLEGILCNA 533
           +G   DI+ QK+S      +A
Sbjct: 287 VGGMTDISAQKQSALQAQRDA 307


>gi|89091982|ref|ZP_01164937.1| hypothetical protein MED92_07441 [Oceanospirillum sp. MED92]
 gi|89083717|gb|EAR62934.1| hypothetical protein MED92_07441 [Oceanospirillum sp. MED92]
          Length = 944

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 143/596 (23%), Positives = 276/596 (46%), Gaps = 14/596 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLA---VLGSGDIVW 419
           + +     +    +  +         +              +R  SLA      + + + 
Sbjct: 350 DQVQIYIFLLLATIFSLGFSLLFSGWLNRKFTEYHREIESKQRALSLASQVFDNASEGIM 409

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   +T       I G ++  + G    +L     +  + F   +   +    G  
Sbjct: 410 VTGSDNRLLTVNDAFVDITGYSADEVVGKNPKFLQSGRHD--ETFYRSMWQMI-NTSGYW 466

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E   R  + +     + I+ +++S G    YI    D+TE+K+  E +   +  D LT
Sbjct: 467 RGEIWNRRKNGEVFPQWLSIQAVTDSAGMARNYIASITDLTERKQVEEKLRYLSDFDPLT 526

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PNR+    R+   L LS    + +  ++ ID+D +K IND LG   GD++L  + +RI
Sbjct: 527 NLPNRRLLGYRVDQTLSLSRRQPDQQFALLYIDLDHFKNINDSLGHRFGDEILQKVAKRI 586

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            EL++  D ++RL G+ F I++   +   + A+ A  +  +IA P+   +  + +T S+G
Sbjct: 587 TELVREGDTVSRLGGDEFMILMPELHKLEQAANLAERILHNIAQPLE-NDSHLMITPSVG 645

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN 717
            A + +   +  ++L+NA+ A++ AK +G N+ + +   ++   S+R+ ++  L  AVEN
Sbjct: 646 IAVYPNDGDSFDKLLRNADAAVHFAKRQGRNNYQFYTAEMNQRASERLQVEISLRKAVEN 705

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P + L D  + G+EALI+W HP  G +  + F+ +AEE  +I  I  ++L  
Sbjct: 706 QEFELFYQPQLNLRDGSLAGVEALIRWRHPNEGLVPPNRFIPLAEETGLILQIGSWVLVE 765

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R    W    +  P  + +N++ +     EL E +++ +  +  SP  + +  +ES +
Sbjct: 766 ACRQGAEW-AAKSTEPFTMSVNVSVRQF-RPELVEEVRSALLTSGLSPKSLVIEITESTL 823

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           M + E++  LL  L+++G+ L+LDDFGT  S ++YL     D +K + + ++        
Sbjct: 824 MQDEEKTLTLLHELKELGVQLSLDDFGTGYSSMAYLKRFNLDQLKIDRAFISDLPQNPDD 883

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            AI  +II +A +     +A+ I      + L  +GC   Q  +   P+  N + +
Sbjct: 884 AAITSAIIDVASHFGLVTVAEGIEKPEQAEFLASVGCIEGQGYYYEKPIPANDLTE 939


>gi|326315980|ref|YP_004233652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372816|gb|ADX45085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 850

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 145/574 (25%), Positives = 268/574 (46%), Gaps = 22/574 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-- 453
               +     R       S D  W+ D     V     I   LG++   + G  R  L  
Sbjct: 281 LQSELRLSEARFRSLCDLSSDWYWEQDAEHRFVHVNQGIKG-LGISEDEVVGRTRWELGA 339

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +   D    R +L +    R+     E +  AAD + +W+ +   P+ +++G  L Y 
Sbjct: 340 NNLSAQDWIEHRRLLAA----RQPFRDLELQRTAADGRIYWVSVSGIPVFSADGAFLGYR 395

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+  DITE+K+    I   AF D LTG+PNR+   DRL   +  +A  ++    ++ +D+
Sbjct: 396 GVGRDITERKRVDAEIERLAFFDPLTGLPNRRLLTDRLHRAIGTAAQ-EHSHGALLFLDL 454

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSL 628
           D +K +ND LG  +GD +LV   +R+   +   D ++R  G+ F ++             
Sbjct: 455 DNFKDLNDTLGHDMGDRLLVQAAQRLLACVGAGDTVSRFGGDEFVVLAEGLPGDMHRARA 514

Query: 629 KIADFAIAMRKSIAMPINLLEREIT-VTASIGFASW---TSSKITSSEMLKNAELAMYHA 684
             A  A  +  ++  P  +        T SIG A +   T       ++LK+A+LAMY +
Sbjct: 515 DAAVLANRITAALGRPYAVGGMGYHHSTPSIGLALFGGGTGDAAGVDDLLKHADLAMYQS 574

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N +  F  S  ++      ++ +L  A+E+ EL L Y P++   D  ++G EAL+
Sbjct: 575 KAAGRNTIRFFDPSMLQAVLARAALESELRHALESDELLLHYQPLVNG-DGSMLGAEALV 633

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +   +F+  AE+  +I  +  ++LER    +++W   A    + + +N++ 
Sbjct: 634 RWRHPQRGLVMPGDFIPAAEQGGLIVPLGQWVLERACAQLVAWSRNAATAQLVLAVNVSV 693

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     +  + +   + ++   P  +K+  +ES++M + E     + +LR  G+   +DD
Sbjct: 694 RQFRQPDFVDQLLQTLRRSGAQPRLLKIELTESLLMADVEEVIARMEQLRAHGVGFAIDD 753

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +    +     AI+R+I+ +A++++  ++A+ +  
Sbjct: 754 FGTGYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIVRTILALARSLDLDVVAEGVET 813

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +K L R GC   Q      P     + + L+
Sbjct: 814 TGQLKFLQRHGCKAFQGHLFGRPAPAAVLERALR 847


>gi|160873264|ref|YP_001552580.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160858786|gb|ABX47320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315265489|gb|ADT92342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1074

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/593 (25%), Positives = 282/593 (47%), Gaps = 15/593 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            P L   + +        + + +       Q       R +     S + +   D      
Sbjct: 470  PKLNINIRVSGTDELARMARAMNRMISERQKANHALTRAAAVFDYSAEGIMVTDADNHIE 529

Query: 429  TTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     + G   + L    H     +F T +   +    G+ + E   + 
Sbjct: 530  LVNPAFCNITGYTLEEVKGRSPSILSSSRHSQ---HFYTTMWESL-QTEGKWEGEVWNKR 585

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             + Q +   + I  + N  G I+++IG+  DI+++K+  + +   A  D LTG+PNR+ F
Sbjct: 586  KNGQVYPEYLAITVVRNEQGQIIQHIGLFMDISKRKQYEQDLWYQANFDALTGLPNRKLF 645

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +RL   + ++  D   +  +++ID+D++K INDV G A GD +L  + +R+  +    D
Sbjct: 646  NERLQHEIHVAQHDSR-KLAILLIDLDQFKYINDVQGHATGDLLLKDVAKRLEGIAGKTD 704

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +AR+ G+ F +IL    N L I   A  + +++ MP +L +REI ++AS G   +    
Sbjct: 705  FIARIGGDEFVLILPRLTNELAIEHMATRIIETLGMPFDLNDREIQISASFGIGVYPEDG 764

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  S + +N E AMY AK  G N+ + F   ++     R+ +++ L  AV  +E  L Y 
Sbjct: 765  LDVSSLTRNTETAMYQAKDAGRNNFKYFTTGMNEAMFARMELEQRLRRAVAQNEFALHYQ 824

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            PI+ +    +  +EALI+W  P +G I   +F+ +AEE  +I+ +  ++L +   D+  W
Sbjct: 825  PIVDMQTGVVCSVEALIRWQDPDFGLIPPDQFIPLAEETGLIEPMGEWVLNQAMHDLRQW 884

Query: 786  RDQANMPPIFILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +       I + IN++S+  ++       + +Q   ++   +P  + +  +ES++MG+  
Sbjct: 885  QKSG--LKINVAINVSSRQCINTRGMGFDQVLQECFNRHHVNPRNVHIEITESMLMGDAS 942

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                 L  +R +G  + +DDFGT  S LSYL   P   +K + S +  +  +     +++
Sbjct: 943  HCLSTLESIRHLGSQIYIDDFGTGYSSLSYLKKFPISVIKIDRSFVENALESNANANLVK 1002

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +I+ M +++E  ++A+ I  E     L  +GC + Q   ++ PL F+ I  LL
Sbjct: 1003 AIVMMGQSLEMELVAEGIETEAQWHFLRDLGCHFAQGYLISKPLPFDEITPLL 1055


>gi|89900556|ref|YP_523027.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89345293|gb|ABD69496.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 716

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 144/569 (25%), Positives = 262/569 (46%), Gaps = 16/569 (2%)

Query: 400 IFSDGERQSLAVLG-----SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           I  + +R  L +       SG+ +   D     V       T+ G     +      +L 
Sbjct: 130 IQRNADRIQLRLAAHVFEYSGEAIMITDRDNQIVDVNAAFTTLTGYHKSEVLSKNPKFLS 189

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                 R  ++ +  +      G  Q EF  R  D      ++ +  + +  GDI  Y+ 
Sbjct: 190 S-GRTTRKEYQAMWAAIRTG--GFWQGEFWDRRKDGSVFPKMMTVSVVLDRAGDIDFYLA 246

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              D++  K++   I   A  D LTG+PNR      L   + ++      +  V+ +D+D
Sbjct: 247 NFVDVSHYKETERRIEHLAHHDTLTGLPNRLHLQVFLEQSILIAKRMSE-QLAVVFLDLD 305

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGDD+L+ +  R+   ++  D++ARL G+ F +IL   +     +  A
Sbjct: 306 RFKTINDTLGHPVGDDLLIQVADRLKTSVRQYDMVARLGGDEFVMILRGHDMPSVASAVA 365

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +R  +  P  + +  +    SIG A +  +     +++K+A+ AMY  K  GGN    
Sbjct: 366 EKIRLHLNQPFQIGQHTLRTATSIGIALYPGNGERMDDLMKHADTAMYFTKSEGGNGFCF 425

Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   ++    +++ ++  L  A+EN +  L Y P + L +++++G E L++W HP+ G I
Sbjct: 426 FSSDMNLHAHEKLELENLLHGALENQQFELYYQPQLSLPEQQVIGAEVLLRWHHPEKGFI 485

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+ +AE    I AI  ++LE   R    W       P  I +N++ +   D  L  
Sbjct: 486 SPAVFIPLAEATNQIGAIGEWVLENACRQASQWLRDGLPLP-RIGVNVSGRQFQDKNLFT 544

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ ++++T     R++L  +E+ V  +P+ +  LL  LR+ GI + LDDFG   S L  
Sbjct: 545 LVKRVLAETGLPADRLELEITETAVTASPDEAARLLQSLRECGIMVALDDFGQGYSSLGQ 604

Query: 873 LGYIPFDTVKFNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           L  +P D +K + + +   T++      AI  + I +  N+  ++IA+ +  +  +  L 
Sbjct: 605 LRDLPIDRLKIDAAFVRDITDEPGHPGGAIAAATIGLGHNLGFSVIAEGVETQAQLSFLM 664

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
             GCD +Q  + A P+        L+ R 
Sbjct: 665 AHGCDEVQGYYFAKPMPREQFEAFLRARM 693


>gi|257091944|ref|YP_003165585.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257044468|gb|ACV33656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1327

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 150/569 (26%), Positives = 261/569 (45%), Gaps = 13/569 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              V+  +         +       +     S + +       + +        I G    
Sbjct: 760  VGVMLDITERKRMEARLLQA----ATVFDSSAEGITITAPDGNIIAVNRAFTEITGYTED 815

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             + G     L      DR  +  +  +     +GR + E   R  D Q     + I  + 
Sbjct: 816  EVIGRNPRMLQS-GFQDRRFYLDMWQAL--GTQGRWRGELWNRRKDGQTFLESLTISAVK 872

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++ G +  Y+G+ +DITE +++ + +   A  D LTG+PNR    DRL   L  +  D+ 
Sbjct: 873  DAQGKVAHYVGVFSDITELRRAHDQLDHQAHHDPLTGLPNRLLLGDRLHKALQRAHRDET 932

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                V  ID+D++K IND LG  VGD VL  +  R+G L++  D + RL G+ F I++  
Sbjct: 933  G-LAVFFIDLDRFKNINDTLGHQVGDRVLCEVAWRLGRLMRESDTVGRLGGDEFLIVIED 991

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  ++  A  +   +      +E E  V ASIG + +      +  ++KNA++AMY 
Sbjct: 992  VGEPTAVSHIAEKILNVLQASPVTVEHEFFVGASIGISVFPQDGADAETLMKNADVAMYR 1051

Query: 684  AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK RG N  E F     ++   R+ ++ DL  A+E  EL +   P   L   ++VG EAL
Sbjct: 1052 AKERGRNTYEFFTKDLTQTSLARLQMETDLRRAIERGELRVYLQPQFSLATGKVVGAEAL 1111

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W  P+ G +   EF+ +AEE  +I  I  ++    A    +W      P + + +N++
Sbjct: 1112 VRWLRPQQGLVLPGEFIKLAEESGLIVPIGEWVQGTAACQWATWVAAGLAPGV-LSVNVS 1170

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              +     + +  +  +  +      ++L  +ES +M + E S  +L  LR +GISL +D
Sbjct: 1171 GVEFARGRIQQTARRTLELSGLPARFLELEITESAIMSHAENSVQVLDNLRAMGISLVID 1230

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S L+YL  +P + +K + S + G     +  AI R++I +  +++ T+IA+ + 
Sbjct: 1231 DFGTGYSSLAYLKRLPLNKLKVDQSFVRGLPNDTEDCAIARAVIALGHSLQLTVIAEGVE 1290

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             E   + LT  GCD +Q      P+ F+ 
Sbjct: 1291 TEAQREFLTGEGCDEMQGYLRGRPMPFDD 1319



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 51/175 (29%), Gaps = 4/175 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
             I   A V         +  + ++        +  +          +      V+    
Sbjct: 614 TWIWAYADVTAQRAAEQALRQSHLELEQRVADRTLELSQQLHFMRQLIEAIPGPVFYKSQ 673

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               +        ++G +   + G        +   D  +     D  +  R G   YE 
Sbjct: 674 EGRYLGCNQAFLELIGKSRDEVVGATVYD---VAPADLADRYKAADDELLARLGSQVYEA 730

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-QDN 537
           RV  AD  +  +I           +    +G+  DITE+K+    +L  A   D+
Sbjct: 731 RVLDADGHYRDVIFHKATYGKPGENGGGLVGVMLDITERKRMEARLLQAATVFDS 785



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 4/142 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + V       + + +    Q+L    +   +      R      P    I G A G +
Sbjct: 368 LFEDVTEKRQADRAMEALLREQALIFERAPTGIAFLR-DRVIQRCNPSFERIFGYAPGQL 426

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G             R+         V    G+   E     AD    W  +    + N 
Sbjct: 427 LGQSTRVCFASEAAWREAGERAY--AVADESGKFIGELEYCRADGTPIWCQVTGS-LLNP 483

Query: 506 NGDILRYIGIANDITEQKKSLE 527
                 Y+ +  D+T ++ + E
Sbjct: 484 ANPAEGYVWLFEDVTARRAAEE 505



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDR--DN 463
               +  SG  V         V    P    + G  +G++ G +         +D   D 
Sbjct: 14  YKAILDHSGIAVVCT--RSRLVYRCNPRAEELFGWPAGTLVGQLDAVFL---PDDASCDA 68

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R  +   +   +  +  E R+   D       +  R + +     L  + I  D+T++ 
Sbjct: 69  LRGTVRPQLRVGK-IVDLETRLARRDGSTFVAHLIARAI-DPAAPRLGTVWIVRDVTQEV 126

Query: 524 KSLEGILCN 532
            + +     
Sbjct: 127 LTRDTSARL 135



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 10/148 (6%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT--TTPDIATILGLASGSM 445
           + V      +  + +    Q+L    +   +     VRDR+     P +  I G + G +
Sbjct: 245 EDVSEKRASAAAMDALLREQTLIFEAAPIGIA---FVRDRIIQRCNPSLERIFGYSPGQL 301

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G             R+         +    G    E +   +D    W  +       +
Sbjct: 302 IGQSTRCFFASEEAWREKGERA--QLLIDECGSFVGEVQYCKSDGLPIWCRVTGS--LAN 357

Query: 506 NGDI-LRYIGIANDITEQKKSLEGILCN 532
            G+     + +  D+TE++++   +   
Sbjct: 358 PGEPGDGLVWLFEDVTEKRQADRAMEAL 385



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 4/146 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + V A     + +      Q L    +   +  +   R  +        I G   G +
Sbjct: 493 LFEDVTARRAAEEALVESLWEQQLIFDNAMIGI-SYHRNRMILRCNRRCEEIFGYLEGGL 551

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L           R +              E   +  D    W+    R +   
Sbjct: 552 AGQPTRVLFASDEAWEAVGRQVYGESASGET--FDGELLYQRRDGTPIWVHAIGRTI-GE 608

Query: 506 NGDILRYIGIANDITEQKKSLEGILC 531
           + D   +I    D+T Q+ + + +  
Sbjct: 609 SADSETWIWAYADVTAQRAAEQALRQ 634



 Score = 47.6 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 24/184 (13%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
           +   +   I   A   G V IV  +   V+    +     +        Q L    +   
Sbjct: 98  VAHLIARAIDPAAPRLGTVWIVRDVTQEVLTRDTSARLLRE--------QQLIFENAETG 149

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGY 474
           +      R         A +LG A+  + G         + ++    +  R    +    
Sbjct: 150 IVILR-ERIIQRCNRRFAELLGYAADELVGQS---TRLYYPSEEAWLETGRRAYAAIAE- 204

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             G    +   R  + +     I    M N       Y+ +  D++E++ S       A 
Sbjct: 205 -TGIYHGDTIFRRRNGESFCCHITGS-MMNRANPDEGYVWLYEDVSEKRASA------AA 256

Query: 535 QDNL 538
            D L
Sbjct: 257 MDAL 260


>gi|53804221|ref|YP_114116.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53757982|gb|AAU92273.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus
            str. Bath]
          Length = 1346

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 144/552 (26%), Positives = 256/552 (46%), Gaps = 12/552 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
                  + +   D  R  V   P  + + G +     G    +L    H      +   +
Sbjct: 790  VFEAVRESIIVTDANRVIVAVNPAFSDMTGYSPEEAVGRTPAFLQSGRH---GKEYYAAM 846

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
               V    G  Q EF  R  + +   ++  I  + +  G ++ YIG+A DI+  K++ E 
Sbjct: 847  WRAVDQE-GSWQGEFWNRRKNGELFAVLETIVTVRDETGAMVNYIGVAADISSLKEAEEH 905

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            I   A+ D L+ +PNR+  ++R    L L+         V+ +D+D +K +ND LG  VG
Sbjct: 906  IHHLAYYDPLSALPNRRYLMERAEYALALAERR-KEELAVVFLDVDHFKDVNDSLGHQVG 964

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D++LV +  +I E  +  D +ARL G+ F ++L        ++  A  +  ++  P    
Sbjct: 965  DELLVRVATQIKEFTRETDTVARLGGDEFALLLPDLG-RDAVSQVADKILAALRKPFEHS 1023

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
             +   VT SIG + +         +L+NA+ AMYHAK +G N    +           + 
Sbjct: 1024 GQTFAVTGSIGISLYPHDGTDFETLLRNADTAMYHAKQQGRNQFRFYDPGMNVDILARLT 1083

Query: 709  --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               +L  A+   EL   + P I L +  +VG EAL++W HP  G +S  +F+ +AE   +
Sbjct: 1084 VLSELREAIPAGELRTFFQPEIDLANGTLVGAEALVRWQHPTRGLLSPDQFIPVAESNDL 1143

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I AI+ ++LE   R +  W+   +  PI + +N+A++   D  L   +++L+ +     S
Sbjct: 1144 IIAISDWVLEDTCRHLAQWKKA-DQAPITVGVNLAARHFRDPRLVPRVKSLLCRYGVPGS 1202

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +ES ++    ++ ++L  L  +G SL++DDFGT  S LSYL  +P  T+K + S
Sbjct: 1203 SLQLELTESTLLDADAQTMIVLQELIALGCSLSIDDFGTGYSSLSYLKNLPIATLKIDQS 1262

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +           I  +++ +  ++   +IA+ +  E   + L   GCD+ Q    + PL
Sbjct: 1263 FVRDIAFDADDRTISGTVVALGHSLGLKVIAEGVETEEQRRILLEQGCDFGQGYLFSRPL 1322

Query: 945  GFNSILKLLKER 956
                 +K   E 
Sbjct: 1323 SSKEFIKWRMEH 1334



 Score =  107 bits (268), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 6/199 (3%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
               G   +           +  I L+         DI+  A++  + + V      + +
Sbjct: 590 GLAAGVRASGAFPIRRFGKVVGAINLYAGERGFFSEDIV--AVLDTMAMDVSFALDILAR 647

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                    + +    ER  LA   +  ++W  D  R             G +     G 
Sbjct: 648 DAERERSEMR-LRESEERFRLAANSAPVLIWMGDTARGCTFFNDMWLNFTGRSLEYELG- 705

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              WL  +H  DR  +     +    R+   + E+R+R  D ++  ++ +  P  ++ G+
Sbjct: 706 -DGWLEGMHPEDRSRWICAYSAAFDARK-PFEIEYRLRRRDGEYRTILGKATPRFDAGGE 763

Query: 509 ILRYIGIANDITEQKKSLE 527
            + YIG   DI+++KK  E
Sbjct: 764 FIGYIGSCIDISDRKKGDE 782



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 23/191 (12%)

Query: 392 ATGYFSQGIFSDGERQSLA------VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              +    + ++ ER  L+      V  + D +   D     V        + G +   +
Sbjct: 340 ERHHMQAALEAEKERADLSRRFEYFVRYANDAILLADRDHRIVDVNDRALDLYGYSREEL 399

Query: 446 HGPIRNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G     L  +   D +      LD  +    G  +        D     + + +R + +
Sbjct: 400 AGMT---LADVVAGDVEGVEHGRLDEALARGGGVWESVH--TRKDGVPVPVELSVRSI-S 453

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G       I  D+TE+K+    +             N  S L +   I+    ++  L
Sbjct: 454 VEGS-DFVQAIVRDVTERKRIELALARQK---------NLYSLLAQTNQIIVRHTSEQEL 503

Query: 565 RPTVMVIDIDK 575
             +V  I I  
Sbjct: 504 FDSVCRIAIRN 514


>gi|258512579|ref|YP_003186013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479305|gb|ACV59624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 799

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 169/795 (21%), Positives = 328/795 (41%), Gaps = 61/795 (7%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           +T  +  L   ++ GVA  + I+  + ++   + ML       W V+         LS +
Sbjct: 36  ETRANRQLVWVVLGGVAMGIGIWS-MHFVAMLALMLPAQMTYNWAVVA--------LSLV 86

Query: 243 VNLPSGELLIW---RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
             +      ++   R+ S + L+   ++     +  +        +   G    A  F +
Sbjct: 87  FAMAGPGAALYVVARSASPVKLAYGALLMGAGIVFMHYTGMAAMTVEGGGFYYRAGPFVL 146

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW---ILIFIWFIGLWM 356
           S                 I +  +Y  ++   +       L  A      + +      M
Sbjct: 147 S---------------VVIAIVASYVALWLSFRLATARGWLAQAAKVACALVMGIAIAGM 191

Query: 357 AITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
             T       + PA          G L L+V +    ++   +AT    + + +D  R  
Sbjct: 192 HYTGMWATVFVLPAHRRAAPMAYSGPLALVVAVFSAFILLAAIATVMLDRRLQADRRRLR 251

Query: 409 LAVL-------GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           LA            D ++  D     V   P    +  +    +    R +   I   DR
Sbjct: 252 LADERFRSLYTHHSDAIFTLDTRGAIVDQNPRAKEL--VPEHELRKSARAFARMIDRRDR 309

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                     +G        EF +RA D   H     I  + +   +I     +A D+T 
Sbjct: 310 PRVFKDYRRALGGSTT--NGEFLLRAGDRALHMSATHIPIVLDD--EIEGVFLVARDVTA 365

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K + E +   AF D LT + NR+ F  R+   +  +         ++ +D+D++K +ND
Sbjct: 366 EKVAAERMNYLAFHDTLTQLANRRHFEARVDDFIRDAR--PGDEMQILFVDLDRFKSVND 423

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L  + R + E+     ++AR+ G+ F I L       +    A A+   +
Sbjct: 424 TLGHEFGDKLLQEIARILKEVAGEDALVARMGGDEFTITLFR-QPMERAVAVADAILNRL 482

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ + +R + +TAS+G AS+    +T   +L++A+LAMY AK  G +    F   +  
Sbjct: 483 RKPVRVEDRPLYMTASVGIASFPRHGVTRDMLLRHADLAMYTAKAEGRSTYRLFEERTAA 542

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +   R+ ++++L  A +  +  + Y P I +  + +VG+EAL++W       +   EF+ 
Sbjct: 543 NAKSRLELEQELRTAAQRGDFEIHYQPKIDMRQKAVVGVEALLRWRRATGEYVPPCEFIP 602

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  I  + L    R   +W D     P+ + +N++   +L +   + ++ ++ 
Sbjct: 603 IAEETGLIAPIGEWCLRAACRQAKAWLDAGR--PLSVAVNLSPYQVLTDGFLDVVREVLD 660

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T      +++  +ES +M + ER+   L   + +GI ++LDDFGT  S LS L ++P +
Sbjct: 661 ETGLPAHYLEIEVTESAMM-DAERAERFLAGCQALGIEVSLDDFGTGYSSLSRLTHLPLN 719

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + +         +  A++ SI+ +A N+    +A+ +  +  +  +  +GCD  Q 
Sbjct: 720 VVKIDRAFTQRAVDGGRARALVASIVDIAHNLGMRCVAEGVETKEQLSVIEALGCDEAQG 779

Query: 938 SHVASPLGFNSILKL 952
            + A P+  + +  L
Sbjct: 780 FYFARPVPPSDLEAL 794


>gi|30249662|ref|NP_841732.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC
            19718]
 gi|30139025|emb|CAD85611.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas
            europaea ATCC 19718]
          Length = 1128

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 156/606 (25%), Positives = 280/606 (46%), Gaps = 23/606 (3%)

Query: 362  LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
            + +  ++      LVL+     FT +   +   Y ++ +       +       + +   
Sbjct: 531  IYHRTVREPTSADLVLVEEFASFTAL--AVQKVYAAEALRLA----ATVFESIREGIVVT 584

Query: 422  DIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D+    V        I G ++  + G   +      H  D+  ++ +  S      G   
Sbjct: 585  DLEPRIVAVNRAYTEITGYSAAQVVGKNPKIIRSGRH--DKSFYQAMWSSL--QEEGYWS 640

Query: 481  YEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             E   R  + + +   + I  +S     N   ++  Y+G+  DI++ K+S   +   A  
Sbjct: 641  GEIWNRRKNGEIYPQWLTISAVSISSASNGRKELCNYVGVFTDISQIKQSEAQLAHLAHY 700

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D LTG+PNR     RL   ++ +    NLR   + ID+D++K +ND LG  +GD++L+ L
Sbjct: 701  DPLTGLPNRLLVQSRLHHAVERAQRY-NLRVATLYIDLDRFKNVNDSLGHPIGDELLIKL 759

Query: 596  TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITV 654
            T R+   L+  D LARL G+ F +++    +  + A  A  +   +A P  L    EI +
Sbjct: 760  TERLKNRLREEDALARLGGDEFLLVMEDVKDPSESAIVAQTLIDLLATPFVLPSGHEIFI 819

Query: 655  TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
             ASIG + +      ++E++++A++AMY AK  G N         S   ++R++++  L 
Sbjct: 820  NASIGISLFPDDASNATELIQHADMAMYQAKKEGRNTYRYHTEALSIAANERLIMENRLR 879

Query: 713  LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             A+   E  L Y P+I      ++G+EAL +W  P    +   +F+ IAEE  +I  +  
Sbjct: 880  HALAAGEFILHYQPLIDARAGHVIGVEALARWQPPDNTIVPPGKFIPIAEETGLIVPLGE 939

Query: 773  FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++L        +W D   +PP+ + +N++ +      L E +Q ++ +T      ++L  
Sbjct: 940  WVLRTACEQGRAWID-TGLPPLVMAVNLSVRQFQSENLVELVQRILEETRLPAVCLELEL 998

Query: 833  SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
            +ES+ M + ERS   L RL+ +GI L +DDFGT  S L+YL   P D +K + S + G  
Sbjct: 999  TESMFMEHAERSIETLNRLKALGIQLAIDDFGTGYSSLTYLKRFPIDKLKIDQSFVRGLA 1058

Query: 892  -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                   I  +II MA+ ++  ++A+ I  E  +  L + GCDY Q      P+    + 
Sbjct: 1059 HDPNDREIAATIIAMARGLKLGVLAEGIESEQQLDFLRQQGCDYYQGFLFHRPVPAIELE 1118

Query: 951  KLLKER 956
              L+E 
Sbjct: 1119 AWLREH 1124



 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 90/268 (33%), Gaps = 15/268 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
           H  +    +     +       L  +    P  TA    + +   +      + +  +  
Sbjct: 153 HLAQHAPHLHLTAMTSAQDALALLPV---NPDQTADFDIVLVDYCLSGGMDGLEFIRLLR 209

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
            ER  L IP  ++       +          D +         L  +       + +   
Sbjct: 210 EER-KLDIPIVLITRQGSEMIAARALHLGVEDYLSRHEGY---LFEVPATLEKARWLAEL 265

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIR 450
                 +     R S  +  S  ++++     +    V  + +I  ++G   G       
Sbjct: 266 TRERINLKQTNLRLSHLLAASPMVLYNLRFTGNVLQPVWVSENIERLIGYTPGEALA-PG 324

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            WL +++ +DR+         +    G+L +++R    D +  W++  +R + N++G   
Sbjct: 325 WWLSHLYPDDREQVLERQPILLS--DGQLTHDYRFYHRDGRIIWILDELRLIRNADGQPH 382

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNL 538
             +G   DI+E K++   ++  A Q  L
Sbjct: 383 EVVGTWLDISEHKQA--ELIRQAHQSAL 408


>gi|307822698|ref|ZP_07652929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307736302|gb|EFO07148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1183

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 140/558 (25%), Positives = 250/558 (44%), Gaps = 12/558 (2%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
            R +     S + +   D     +          G       G   + L    H      +
Sbjct: 630  RIAAVAFESQEAMVITDTTSVILRINKAFTESTGYTEEEAVGQKISILKSGRH--GAAFY 687

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +    +    G  Q E   R  + + +   + I  +  S+G +  Y+G   DITE+K 
Sbjct: 688  AAMWKGILS--VGAWQGEIWDRRKNGEIYPKWLSITAVKGSDGVVSHYVGTHTDITERKA 745

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            + E I   AF D LT +PNR+   +RL   +++   D   +  ++++D+D++K IND LG
Sbjct: 746  AEEQIKLLAFYDPLTRLPNRRLLQERLKHGINVERRDGK-QLGLLMLDLDRFKAINDSLG 804

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               GDD+L  +  RI   L+  D++ARL G+ F ++L         A  A  +   +  P
Sbjct: 805  HLAGDDLLQQVAERIKARLRDVDMVARLGGDEFIVLLEDIAQPEDAARVAKEIIADLTKP 864

Query: 645  INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
              L     + +  SIG + +     TS  ++ +A+ A+Y AK  G      F        
Sbjct: 865  FCLTHSDNVQIGVSIGISLYPQHGDTSELLMDHADAALYQAKDAGRGCFAYFSEDLTIAA 924

Query: 702  SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             +R+ ++  L  A+E  EL + + P + +    IVG EAL++W  P  G I    F+ IA
Sbjct: 925  RERIALETRLRHAIEQQELRVFFQPQVDIASGRIVGAEALVRWQDPVEGLIPPIRFIPIA 984

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            EE  +I  +  ++L    R    W D    PP+ + +N++S     +++C  +  ++S T
Sbjct: 985  EETGLIVEVGEWVLRETCRQGRQWLDAGL-PPLTLAVNVSSHQFRRSDICALVATVLSDT 1043

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   +++L  +ES +M N + +  +L  LR  G+ L +DDFGT  S L+YL + P D +
Sbjct: 1044 GFPSQQLELEITESGLMENQDNATAILNSLRAQGVRLAIDDFGTGYSSLAYLKHFPLDVL 1103

Query: 882  KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K +   +      +  + I  +I+ M   +   ++A+ +     +  L   GCD  Q   
Sbjct: 1104 KIDKRFIDDIPFQQDDMEIAATIVAMGHILGFKVLAEGVETMAQLAFLQEKGCDMYQGYI 1163

Query: 940  VASPLGFNSILKLLKERF 957
             + P+  +   +LL+ + 
Sbjct: 1164 KSKPVPAHEFAELLRAQQ 1181



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/384 (12%), Positives = 114/384 (29%), Gaps = 32/384 (8%)

Query: 165 ISTPNLPQ---IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           + T +       YLW P      + S ++       +   L       Y V + + L   
Sbjct: 10  VGTSSFMPHGACYLWLPPMLWLHIISDSIIAIAYFSIPFAL------LYFVKKRTDLAYR 63

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL-------H 274
           +      +         L  +  +       +     + L+++L+  +   L        
Sbjct: 64  WVFVLFGVFICLCGTTHLISIWTI---WHPDYWLDGLVKLATALVSIVTALLIWPLIPKL 120

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM--- 331
                 +    + + +  I      +         I      +  L         G+   
Sbjct: 121 LRLPSPQALQTSETYLRAIFDATPDAMLISNEHGIITMANQQAERLLGYSINELLGLSIE 180

Query: 332 ----KGYERAVLLIPAWILIFIW----FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
               + +  A   +               G  + + ++  +++     +  +     L  
Sbjct: 181 TLVPESFRAAHPGLRTQFAAVAVTRPMGAGQTVKVLRKDGSELDVEISLSPIRTEQGLFF 240

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            + ++ +         + +  ER       S  ++W  +   +            G  S 
Sbjct: 241 ASALRDITERKQAEATLRASEERFRRMANSSPIMIWITNAEGEPTFVNQSWLDFTGFDSM 300

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                  +W+  IH +DR+            +   +  E+R+R A   + W++ +  P+ 
Sbjct: 301 QTM-THGDWISSIHPDDRETAFVAYYQNTEVQAA-ITTEYRLRNATGDWRWILDKGMPLY 358

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           + +G    YIG A DITE+K+  E
Sbjct: 359 DESGVFNGYIGSAIDITERKQVQE 382



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 1/144 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +       + +    +  S +   +    W  ++    ++ + ++  I G+A  
Sbjct: 368 IGSAIDITERKQVQEILQDKEQMLSESQRIAHVGSWSMELATGCISWSDEMYRIFGVAQQ 427

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +    ++ +L  I+ +DR   +  L      +  + + +F +R  D    ++        
Sbjct: 428 TFGLSLKTFLDLIYPDDRAAMKRWLSDCRAGKESQ-ELDFHIRLPDGAVRFIRGSGGLQY 486

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +     LR +G A DITE+K++  
Sbjct: 487 DEMNRPLRMVGSAQDITERKQAER 510



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 14/154 (9%)

Query: 386 VIQHVLATGYFSQGIFSDGE------RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            +   L     +Q I    +      +    +  S D  W  D++ + +      A I+G
Sbjct: 488 EMNRPLRMVGSAQDITERKQAERVLNQIKAMIDISLDGFWVADLMGNVLQANEAYAKIIG 547

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   +     + L        +  +  +   V         E R    D     + +  
Sbjct: 548 YSIDELVNMRISQLEA--KEGSEQIKAHIVKIVTQGYDLF--ETRHLHKDGHTIDIEVSA 603

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             +S    +  ++     DITE+K+    +   A
Sbjct: 604 AFLS----EFQQFCVFCRDITERKRIEMDLRIAA 633


>gi|224826492|ref|ZP_03699593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224601093|gb|EEG07275.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 836

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/554 (25%), Positives = 269/554 (48%), Gaps = 13/554 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--HINDRDNFRTI 467
               + + +   D      +  P    I G ++    G     L          ++    
Sbjct: 286 VFESTLEGIAITDGAGIIQSVNPAFERITGYSAQESIGKTPALLKSGKQPPEFYEHLWHS 345

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L      R G  Q E   R  +   +   + I  +   NG+   Y+ + +DIT++K++ E
Sbjct: 346 LK-----RDGVWQGEVINRRKNGLLYTEHLSITGIRGDNGEYAHYVAVFSDITQRKQAEE 400

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+PNR  FL+RL   ++ +  +   R  ++ ID+D++K +ND LG   
Sbjct: 401 RLHFLANHDALTGLPNRTLFLERLEAGVEQA-REFGQRMALLFIDLDRFKLVNDTLGHHA 459

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++LV +   + ++     ++ARLSG+ F +++ + ++  ++A  A ++  +IA    +
Sbjct: 460 GDELLVWIAEEMRKVAPPLAMVARLSGDEFTLLMPAVDSVQQVASRAQSVLDAIAGETVV 519

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
             +E+ V+ASIG + +     ++  +L NA+ AMY AK RG ++ + +      S  +R+
Sbjct: 520 AGQEVFVSASIGISMFPEDGASADVLLVNADTAMYRAKERGKSNFQFYTPDMNASALERL 579

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L  A+   EL + Y P + L    + G EALI+W HP+ G +S + F+ IAE+  
Sbjct: 580 RLEYSLHKALAQDELEVWYQPKVELATGRLDGAEALIRWRHPELGLVSPARFIPIAEDSS 639

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++L+   R +  WR++       + +N++ + L    + E ++  + +     
Sbjct: 640 LIVPIGEWVLKTACRQVREWRERRLFGG-RVAVNVSGRQLKFAGVVELVERTLEECGLPS 698

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S ++L  +ESV M        +L RL ++G+ L++DDFGT  S LSYL  +P   +K + 
Sbjct: 699 SALELEITESVAMDEDSGMVEVLRRLHELGVYLSIDDFGTGYSSLSYLKRLPVHGLKIDQ 758

Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +    +     AI ++II +A+++   ++A+ +  +   + L   GC   Q    + P
Sbjct: 759 SFVADLHQNRDDAAITQAIISIARSLGLGLVAEGVELDEQRRYLVEQGCGTGQGYLFSRP 818

Query: 944 LGFNSILKLLKERF 957
           L       LL+  +
Sbjct: 819 LPAAEFEALLEREY 832


>gi|224824691|ref|ZP_03697798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Lutiella nitroferrum 2002]
 gi|224603184|gb|EEG09360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Lutiella nitroferrum 2002]
          Length = 1086

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 147/583 (25%), Positives = 270/583 (46%), Gaps = 18/583 (3%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
             +IG  V          +Q + S           + + +         +        I G
Sbjct: 506  AIIGVVVDISDRVQADANQKLASK------VFENAAEGILITGADYRIIAVNQAFTRITG 559

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                 + G +      I  ++      +LD    +  G  Q E   R   ++++   + I
Sbjct: 560  YPPELVIGRV----SRIFRDNTSWSVAMLDGLARH--GHWQGEMLDRRRSHEWYPAELSI 613

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + +  G I  Y+G+  DIT +K++ E +   A  D LT +PNR   +  L   +   A
Sbjct: 614  SAVRDDAGAITNYVGVFADITVRKQAEERLQFLANHDPLTRLPNRSWLIACLEDRIQQIA 673

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +    +  VM +D+D++K IND  G   GD++L     R+ +++     +ARL G+ F +
Sbjct: 674  SSGQ-QVAVMFLDLDRFKLINDSFGHQTGDELLRETASRLEQVVGGRGQIARLGGDEFTL 732

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            ++    +   ++  A  +   +A P+ L  +E+ VT S+G + +      +  +LKNA++
Sbjct: 733  LVSHFASQATLSTLAEDILAVLAQPLWLEGQELIVTGSLGISVYPHDGSDARTLLKNADV 792

Query: 680  AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK  G N  + F   +++   +R+ ++  L  A+E  E  L + PI+      +  
Sbjct: 793  AMYRAKEAGKNTYQFFAAEMNAQAIERLQLERGLRQALERGEFELHFQPIVAAATYRLEA 852

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            LE L++W HP+ G +S   F+ +AEE  +I+ I  +++ +  R +  W       P  + 
Sbjct: 853  LEVLLRWRHPELGLVSPVRFIPLAEETGLIRPIGDWVIRQACRQLAEWDCLGLHVP-RLA 911

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++++      L   +   +++   +  R++L  +ES+VM NP  +  LLG L+ +G+ 
Sbjct: 912  INLSARQFEQQGLIMQVAGALAEAGIAAGRLELEMTESMVMQNPSEAVSLLGELKALGVR 971

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L++DDFGT  S LSYL   P DT+K + S + G        AI  +I+ MA+ +  +++A
Sbjct: 972  LSIDDFGTGYSSLSYLKRFPLDTLKIDRSFIEGLPGDGDNAAIAEAILAMARKLSFSVVA 1031

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + +  E     L   GC  +Q    + PL    +   L++R P
Sbjct: 1032 EGVETEAQAAFLCAKGCQLLQGYLFSRPLPAAELPAFLQQRSP 1074



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 20/260 (7%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA------ 337
            +    +A   +L   + +  +  +    + L  I L      +   + G+         
Sbjct: 143 LLQCGALALALVLCVPAAFAGVEYSRRRYLELLLIALVTLALWVAVFVAGHVSLVPIHLL 202

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDND----------IIQPALVGGLVLIVILIGFTVI 387
           +     W        G  +     L             +  PA    L L ++L    V 
Sbjct: 203 LYPCLLWAACRAGIGGATLLGLLILVLATFLDGPSFQPVPLPANGIVLNLALVLSAQLVA 262

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
               A     + +     R    +  S +++   D+    +      +  LG A   + G
Sbjct: 263 TQSEAAARRIRQLQDSLARFEAWLRNSPNVMSLKDLEGRYLLVNRAYSRALGKAPAELIG 322

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                  ++   +        D  V       QYE +    D      ++   P+ +++G
Sbjct: 323 KKSA--DFLPPEE-ARATAEQDRQVLSALESRQYE-QTLTLDGLPGDFLVTKFPLFDADG 378

Query: 508 DILRYIGIANDITEQKKSLE 527
                  IA DIT+ K+  +
Sbjct: 379 LPAGIGCIATDITQNKRERQ 398



 Score = 61.1 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            + +     + ++    +     +   IG  +   +       Q       R    +  S
Sbjct: 356 TLTLDGLPGDFLVTKFPLFDADGLPAGIG-CIATDITQNKRERQAKQEAENRYHALIEQS 414

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              ++              +A +LG     + G        +   +R   R  +   +  
Sbjct: 415 LVGIYILQ-DECLAYVNDKLAEMLGYPGEELQG--ERIETVLAHEERQRLRQQITQRLSE 471

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               + +  R+   D Q   + I  R +    G     IG+  DI+++ ++  
Sbjct: 472 NISIMHFSARLVRKDGQLLDVEIHSR-LFEYRGR-SAIIGVVVDISDRVQADA 522


>gi|169830141|ref|YP_001700299.1| putative signaling protein [Lysinibacillus sphaericus C3-41]
 gi|168994629|gb|ACA42169.1| Hypothetical signaling protein [Lysinibacillus sphaericus C3-41]
          Length = 906

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/568 (25%), Positives = 274/568 (48%), Gaps = 16/568 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMH 446
           + +       Q +  + E   L +  +G+ ++  D+ R+     P  A +LG  +   + 
Sbjct: 347 KELERVVAELQQLSREKE---LILNSAGEGIFGLDLDRNITFCNPAGALMLGYETDRDLI 403

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G     +  I           +  F+       +  FR    D+ +  +      +   +
Sbjct: 404 GKS---VEIIMSGCEAEVNIPVSPFLNTNFNSYEVFFR---KDHTYFPVEYVTSFIKEGD 457

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             ++  +    DIT++K+  E I  +A+ D+LT +PNR   LDRLT  L  +  +   + 
Sbjct: 458 -KVVGEVITFKDITQRKQLEEKIKYHAYFDSLTDLPNRVLLLDRLTQGLKYAKVNGE-KL 515

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K +ND LG + GD +L S+ +R+   +     ++R  G+ F I L +   
Sbjct: 516 AVLYLDLDRFKLVNDSLGHSYGDLLLQSVAKRLSACVPEDATVSRQGGDEFTIYLPNIKC 575

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              I      +  S + P NL++ EI +  SIG + +  +  T+  ++KNA+ AMY +K 
Sbjct: 576 ENDILKVINCINASFSQPFNLIDNEIYIKTSIGISLFPENGDTTDTLIKNADTAMYKSKE 635

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G     F   + +   + + ++ DL  A+E  EL + Y P I     +I G+EAL++W
Sbjct: 636 TPGTSYHFFSEGMDTRTFESIKLENDLYKALERDELMIFYQPQINYKTNKIKGVEALLRW 695

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +H + G I+  +F+ +AEE  +I  I  ++L+   + +  W +Q   P I + +N++   
Sbjct: 696 NHREHGMITPDKFIPLAEETGLIVPIGEWVLKEACKQLKEWHNQ-GFPLISMSVNLSVHQ 754

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
              N L   ++ ++ +   SP  ++L  +E++++ N E +   + +L+ +G++L +DDFG
Sbjct: 755 FEQNNLFSIIENVLHEADLSPEYLQLELTENLIVKNTEVTLKTMKQLKGLGVNLAIDDFG 814

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           T  S L YL  +P  T+K + S +    T+   AI  +II +A+N++  +IA+ +  +  
Sbjct: 815 TGYSSLGYLKNLPISTLKIDKSFVQEMLTDDAAAITNTIITLAQNLKLEVIAEGVETKEQ 874

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
              L    C  +Q    + P+    I+K
Sbjct: 875 ADYLLVQNCHLMQGYFFSKPMKAGEIMK 902


>gi|296159333|ref|ZP_06842158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia sp. Ch1-1]
 gi|295890317|gb|EFG70110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia sp. Ch1-1]
          Length = 932

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 152/578 (26%), Positives = 260/578 (44%), Gaps = 14/578 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + +      ++ +    E+       +    +W W          P +    G       
Sbjct: 334 RAIRLASEMTRELRESEEKFRAIADCTVNLEIW-WGPDGKPRWINPSVEHYTGYTVAECM 392

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    IH +D +         +   RG    EFR    D    W+ +   P+SN+ 
Sbjct: 393 AMPNFARTLIHPDDVERVAPEFQKGLQGFRGD-DLEFRCVRKDGSLLWLSLSWVPISNAR 451

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           GD + +     DITE+KKS E I   AF D LT +PNR   LDRL   +  ++ ++N+  
Sbjct: 452 GDFVGFRTSGRDITERKKSEEKIRELAFYDTLTRLPNRALLLDRLRESMA-ASRENNVCG 510

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN- 625
            +M ID+D +K +ND LG   GD +L  +  R+   +   D +AR+ G+ F ++L + + 
Sbjct: 511 ALMFIDLDHFKTLNDTLGHDKGDLLLRHVAYRLSSSVSKGDTVARVGGDEFVVVLGNLSL 570

Query: 626 ----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                + +       +   +     L   +   TASIG   + + + ++ E+ K A+LAM
Sbjct: 571 NKAAATAETEAVGEKILAVLGRAYELNGVQFRSTASIGVTVFDAEQTSTDELFKQADLAM 630

Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y +K RG N +  F  +   +   R  ++  LC A+E +   L Y   + +  + I G E
Sbjct: 631 YKSKERGRNAMCFFDPAMQTTVLKRAELEVGLCNAIEENRFVLHYQAQV-VDGDHITGAE 689

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G I  +EF+ +AEE  +I  I   +LE     +  W  Q  M  + I +N
Sbjct: 690 ALVRWEHPVCGLIPPAEFIPLAEETGLILEIGRMVLESACAQLALWATQPQMAHLSIAVN 749

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++   + +  E +  +I++      R+KL  +ESV++ N E     +G LR  G++ +
Sbjct: 750 VSARQFREPDFVESVLDVINRKGARADRLKLELTESVLVENVEDIIEKMGALRARGVTFS 809

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFG   S LSYL  +P D +K + S +           I R+I+ +A++ +  +IA+ 
Sbjct: 810 LDDFGIGYSSLSYLKRLPLDQLKIDRSFVRDILEDPNDADIARTIVALARSFDLGVIAEG 869

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  E     L   GC   Q      PL   S  + +  
Sbjct: 870 VETEAQRDFLAVAGCHAYQGFLFCKPLPVRSFEQFVAS 907


>gi|22299155|ref|NP_682402.1| hypothetical protein tlr1612 [Thermosynechococcus elongatus BP-1]
 gi|22295337|dbj|BAC09164.1| tlr1612 [Thermosynechococcus elongatus BP-1]
          Length = 1292

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 267/566 (47%), Gaps = 8/566 (1%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                    +    ER  L    + DI+   D     +  +P   T+LG  + ++ G   +
Sbjct: 725  ERKATELALRESEERYRLLAENTSDIICLLDCQGSCLYVSPSYETLLGWPTETLIG--EH 782

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +    H  +R   +  L   +  R+      ++V  A     W+   ++P  +S G + +
Sbjct: 783  FTQLCHPEERSRVKQELQQMIEQRQ-FWPITYQVCTARGDVLWLETLVKPRYDSQGHVQQ 841

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
                + D+T + +    +  +A+ D+LTG+PNR  F+++L   +  + T+      V+  
Sbjct: 842  LQTTSRDVTSRVQVQMQLHHDAYHDSLTGLPNRLYFMEQLAAAISQAQTNPQFHYAVLFF 901

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K IND LG  VGD VL++    +  L+     +AR  G+ F I+L    +  +  
Sbjct: 902  DLDRFKVINDSLGHGVGDQVLIAFATWLRRLVGNQYTVARFGGDEFVILLTHVPHPQRAI 961

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +  S+  P+ + ER+I ++ SIG     +   T   +L++A+ AMY AK + G  
Sbjct: 962  ALCEELIHSLQQPLRVGERQIFLSTSIGVVFAQNEYETGMAVLRDADTAMYAAKRQSGRR 1021

Query: 692  VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
               F         +R+ ++ DL  A+    L L+Y P++ L  + +VG+EAL++W HP+ 
Sbjct: 1022 YAVFDTQMYEQVLERLHLEHDLRQALNQGGLQLLYQPVVHLQSQRLVGMEALVRWQHPER 1081

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDN 808
            G +S + F+ IAE+  +I A++ + L +    + +WR Q +    + + +N+++K L D 
Sbjct: 1082 GLVSPAHFIPIAEDTGLIVALDQWALAQACWQLWTWRQQYSTAANLVLSVNVSAKTLQDP 1141

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
               + +  +  +      ++ L  +E + +        LL  LR   + +++DDFGT  S
Sbjct: 1142 TFLQHLDTIRQRYPLPKGQLLLELTERIGIELGSEMLSLLESLRHRHVEISIDDFGTGYS 1201

Query: 869  LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             LSYL  +P   +K + S ++   E      I+R I+ ++K +   +IA+ I     ++ 
Sbjct: 1202 CLSYLHSLPIQHLKVDRSFVSQLEENERNLQIIRMILLLSKQLGYRVIAEGIETPKQLQI 1261

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKL 952
            L  +GCD  Q    A PL   +   L
Sbjct: 1262 LQELGCDEGQGYLFARPLPPETFASL 1287



 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 19/202 (9%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLI-----------VILIGFTVIQHVLATGYFSQ 398
             +     +T       I     G +  +             ++  TVI  V        
Sbjct: 544 SVLRSAETLTPWFAQWRIIHPTTGEIRWLEGAGQPTRDADGAVVWHTVILDVTDRHLAEA 603

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +     +  LA   S    +  D+       +P     LG  + +    + +W   +H 
Sbjct: 604 RLKEQQAQLELAARVSNIGFYFCDLHTGTFYVSPSYKAQLGYPATTQEVNLEDWEERLHP 663

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            DRD        F+         + R+R  +  + W       + +  G   + +G   D
Sbjct: 664 EDRDRALAAYRQFLRGE-AHYSIDLRLRHCNGTYRWFHSEAVLIHDEQGQPSKVVGTNVD 722

Query: 519 ITEQK-------KSLEGILCNA 533
           ITE+K       +S E     A
Sbjct: 723 ITERKATELALRESEERYRLLA 744



 Score = 81.9 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 60/210 (28%), Gaps = 13/210 (6%)

Query: 334 YERAVLLIPAWILIFIWFIGLWMAIT--KRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           +  A LLIP  +   +W                  I  A      L V +   T+ Q   
Sbjct: 401 FPGAWLLIPLIVADRVWGSLTLFNYPEPHEWSRTEIDLARAVATQLEVAIYQATLYQQAQ 460

Query: 392 A----TGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLASG 443
                       +    E   L        ++ +    D         P    + G+ + 
Sbjct: 461 QELAERRRIEATLRQSEECFRLTATNVPGAIFRYIQYPDGRNRVFYLNPMCERLWGVPAE 520

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPM 502
           +      +    +H  DR+     +              +R+      +  W+    +P 
Sbjct: 521 AAAEDGEHLWQLVHPEDREATWQSVLRSAETLTPWFAQ-WRIIHPTTGEIRWLEGAGQPT 579

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +++G ++ +  +  D+T++  +   +   
Sbjct: 580 RDADGAVV-WHTVILDVTDRHLAEARLKEQ 608



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 3/132 (2%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +   R    +    D+V                       +  + G    W  ++   D
Sbjct: 171 QAQANRYYEILQSQSDLVLCSRADTTITFANDAFCQFFSRPASVVIGCP--WSEFVLAED 228

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                  +   +         E RV        W       + ++ G++     +  DIT
Sbjct: 229 LPPLLEKVAQ-LRPDAPTFVNENRVYHPQYGLRWTQWMNTAIFDAEGNLREIQSVGRDIT 287

Query: 521 EQKKSLEGILCN 532
             K+ L      
Sbjct: 288 ALKEQLLREQAL 299



 Score = 45.3 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 396 FSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL 453
               +  D E    A +      V  +D+  + V   P    +LG+    +    I   L
Sbjct: 27  LQGRVGYDLEHYLAAVLSVLPVGVALYDVTGEIVYMNPAGRALLGVEDPATTASQICADL 86

Query: 454 PYIH-INDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +  +DR   +  L      +   +   E  V+  D Q   + ++  P+ N  G +  
Sbjct: 87  RIFYCGSDRPYPKDELPGIQALQGLTVPPMELEVQYGDRQL-TVEVQASPILNPAGQVEF 145

Query: 512 YIGIANDITEQKKSLEGILCNAFQ 535
            I    +IT +K+S          
Sbjct: 146 SISTFWEITARKRSELEQQILKNY 169


>gi|319427966|gb|ADV56040.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1502

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 140/551 (25%), Positives = 268/551 (48%), Gaps = 11/551 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +    + V    +     +  P  + I G +   +       +   +   R+ F +I  
Sbjct: 953  VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYSERQITDKY--LVHLAYKQQRELFNSIEQ 1010

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+ + +
Sbjct: 1011 QLLRHK--HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDL 1068

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G  VGD
Sbjct: 1069 RFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGHHVGD 1127

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L +  +R+   ++  D +ARL G+ F IIL     +      +  + ++   P  L +
Sbjct: 1128 LLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLED 1187

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
            + +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +             +
Sbjct: 1188 KSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLNEIATRHVLL 1247

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +  L  A+  +EL LVY P   L D  + GLEAL++W H + G IS  EF+ +AEE  +I
Sbjct: 1248 EAGLKQAIHRNELSLVYQPKFSLRDGSLTGLEALLRWHHTELGPISPVEFIPLAEETGII 1307

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I  +++    + +  W        I + +N++++ L   ++   ++  ++ +      
Sbjct: 1308 NQIGHWVINHACQQLAEWNALGFN-NISMAVNLSARQLK-ADIISTIEVALAVSGLPAQS 1365

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K +   
Sbjct: 1366 LELELTESMIMGNPQDSVSILSKLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1425

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++ PL 
Sbjct: 1426 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQAQLNFLGLQGCDEVQGFLLSKPLS 1485

Query: 946  FNSILKLLKER 956
                L LL  +
Sbjct: 1486 AKDCLTLLGNQ 1496



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 7/175 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             +                       + ++I       Q       F   I +  ER  L
Sbjct: 773 TLLVNLKVQAPFYRTPFAYTLYCLLAIGLLIWGLHWRKQKRQQQREFETSIRASEERLKL 832

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  SGD +WDW+I  ++V  T   A++   +S ++          +H  DR+ F+  L 
Sbjct: 833 ALWASGDGMWDWNIKENKVYRTNMDASVSHWSSHNLLH------ENMHPEDREKFKYELA 886

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
             +  R    + E+R+  A  ++ W++ R + + ++++   +R  G   +IT +K
Sbjct: 887 EHLQGRTPFFEIEYRIEGAFGKWIWILDRGKVVETDAHMQPMRMTGTNRNITSRK 941


>gi|280984553|gb|ACZ99253.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas putida]
          Length = 631

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/623 (23%), Positives = 281/623 (45%), Gaps = 15/623 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+ ++ + + + +  + L       L   + +   V   VL+  ++ +     +L     
Sbjct: 13  ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSAVLIYVSRVRLLNFIGH 72

Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451
              +   D ER  +A      + + V   D     V        I G     + G     
Sbjct: 73  GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQHDEVIGQRPSK 132

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    H      ++ I  +     +G    E   R    + +     I  + +  G++  
Sbjct: 133 FKSGRH--GLAFYQEIFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSH 188

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ + +DI+  K S + +   A  D LTG+PNR  F DR+   L  +  +      ++++
Sbjct: 189 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRVEQALAAAQANKRG-CALLLL 247

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D ++ IND LG  +GD +L  +  R+GE+L     LARL G+ FG++  +     +  
Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGMTLARLGGDEFGVLAENCQQVGQAG 307

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + + +  P       + ++AS+G + + S  + + ++L+NA+ A+Y AK  G   
Sbjct: 308 KLAQCIIERMREPFQFEGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRAC 367

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +        +  ++   +L  A+E  EL + + P+  L     VG+EAL++W HP  
Sbjct: 368 YALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLATGRQVGVEALVRWQHPGR 427

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  SEF+ IAE   +I  I+ ++L++  R ++ W+ +      F+ +NI+S+    +E
Sbjct: 428 GLVPPSEFIPIAERTGLIAEIDTWVLQQACRQMVQWQAEGRQLA-FVGVNISSRLFGQHE 486

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++  T  +P+ ++L  +ES VM +PE +   L RLR++G++L +DDFGT  S 
Sbjct: 487 LYRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 546

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +P   +K +   + G    E  IAI+R II +A+++   + A+ I        L
Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFL 606

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
            +  C   Q      P+    + 
Sbjct: 607 LQEECQLGQGYWFGRPVPAADLR 629


>gi|148545489|ref|YP_001265591.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148509547|gb|ABQ76407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 631

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 149/623 (23%), Positives = 283/623 (45%), Gaps = 15/623 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+ ++ + + + +  + L       L   + +   V   VL+  ++ +     +L     
Sbjct: 13  ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSAVLIYVSRVRLLNFIGH 72

Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451
              +   D ER  +A      + + V   D     V        I G     + G     
Sbjct: 73  GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSK 132

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    H      ++ I  +     +G    E   R    + +     I  + +  G++  
Sbjct: 133 FKSGRH--GLAFYQEIFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSH 188

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ + +DI+  K S + +   A  D LTG+PNR  F DR+   L ++  +      ++++
Sbjct: 189 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRVEQALAVAQANKRG-CALLLL 247

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D ++ IND LG  +GD +L  +  R+GE+L     LARL G+ FG++  +     +  
Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGMTLARLGGDEFGVLAENCQQVGQAG 307

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + + +  P       + ++AS+G + + S  +++ ++L+NA+ A+Y AK  G   
Sbjct: 308 KLAQCIIERMREPFQFEGNRLFISASVGISLFPSDALSAEQLLRNADSALYKAKSNGRAC 367

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +        +  ++   +L  A+E  EL + + P+  L     VG+EAL++W HP  
Sbjct: 368 YALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLATGRQVGVEALVRWQHPGR 427

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  SEF+ IAE   +I  I+ ++L++  R ++ W+ +      F+ +NI+S+    +E
Sbjct: 428 GLVPPSEFIPIAERTGLIAEIDTWVLQQACRQMVQWQAEGRQLA-FVGVNISSRLFGQHE 486

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++  T  +P+ ++L  +ES VM +PE +   L RLR++G++L +DDFGT  S 
Sbjct: 487 LYRQIAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 546

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +P   +K +   + G    E  IAI+R II +A+++   + A+ I        L
Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQTEQASFL 606

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
            +  C   Q      P+    + 
Sbjct: 607 LQEECQLGQGYWFGRPVPAEDLR 629


>gi|120600574|ref|YP_965148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120560667|gb|ABM26594.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1511

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 140/551 (25%), Positives = 268/551 (48%), Gaps = 11/551 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +    + V    +     +  P  + I G +   +       +   +   R+ F +I  
Sbjct: 962  VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYSERQITDKY--LVHLAYKQQRELFNSIEQ 1019

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+ + +
Sbjct: 1020 QLLRHK--HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDL 1077

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G  VGD
Sbjct: 1078 RFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGHHVGD 1136

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L +  +R+   ++  D +ARL G+ F IIL     +      +  + ++   P  L +
Sbjct: 1137 LLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLED 1196

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
            + +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +             +
Sbjct: 1197 KSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLNEIATRHVLL 1256

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +  L  A+  +EL LVY P   L D  + GLEAL++W H + G IS  EF+ +AEE  +I
Sbjct: 1257 EAGLKQAIHRNELSLVYQPKFSLRDGSLTGLEALLRWHHTELGPISPVEFIPLAEETGII 1316

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I  +++    + +  W        I + +N++++ L   ++   ++  ++ +      
Sbjct: 1317 NQIGHWVINHACQQLAEWNALGFN-NISMAVNLSARQLK-ADIISTIEVALAVSGLPAQS 1374

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K +   
Sbjct: 1375 LELELTESMIMGNPQDSVSILSKLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1434

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++ PL 
Sbjct: 1435 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQAQLNFLGLQGCDEVQGFLLSKPLS 1494

Query: 946  FNSILKLLKER 956
                L LL  +
Sbjct: 1495 AKDCLTLLGNQ 1505



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 7/175 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             +                       + ++I       Q       F   I +  ER  L
Sbjct: 782 TLLVNLKVQAPFYRTPFAYTLYCLLAIGLLIWGLHWRKQKRQQQREFETSIRASEERLKL 841

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  SGD +WDW+I  ++V  T   A++   +S ++          +H  DR+ F+  L 
Sbjct: 842 ALWASGDGMWDWNIKENKVYRTNMDASVSHWSSHNLLH------ENMHPEDREKFKYELA 895

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
             +  R    + E+R+  A  ++ W++ R + + ++++   +R  G   +IT +K
Sbjct: 896 EHLQGRTPFFEIEYRIEGAFGKWIWILDRGKVVETDAHMQPMRMTGTNRNITSRK 950


>gi|146294731|ref|YP_001185155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145566421|gb|ABP77356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1511

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 140/551 (25%), Positives = 268/551 (48%), Gaps = 11/551 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +    + V    +     +  P  + I G +   +       +   +   R+ F +I  
Sbjct: 962  VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYSERQITDKY--LVHLAYKQQRELFNSIEQ 1019

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              + ++      E  +R    +   + + I  + +  G+   ++ +  DITE+KK+ + +
Sbjct: 1020 QLLRHK--HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDL 1077

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LTG+PNR  F DRL   +  +   +N+   ++ +D+D++K IND +G  VGD
Sbjct: 1078 RFLASFDTLTGLPNRTLFQDRLNHAITQAHRANNI-VALLFLDLDRFKHINDSMGHHVGD 1136

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L +  +R+   ++  D +ARL G+ F IIL     +      +  + ++   P  L +
Sbjct: 1137 LLLKAAAKRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLED 1196

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
            + +T++ SIG + + +    +  ++K A+ AMYHAK  G N+ + +             +
Sbjct: 1197 KSLTISTSIGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLNEIATRHVLL 1256

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +  L  A+  +EL LVY P   L D  + GLEAL++W H + G IS  EF+ +AEE  +I
Sbjct: 1257 EAGLKQAIHRNELSLVYQPKFSLRDGSLTGLEALLRWHHTELGPISPVEFIPLAEETGII 1316

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I  +++    + +  W        I + +N++++ L   ++   ++  ++ +      
Sbjct: 1317 NQIGHWVINHACQQLAEWNALGFN-NISMAVNLSARQLK-ADIISTIEVALAVSGLPAQS 1374

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES++MGNP+ S  +L +L+ +G+++ +DDFGT  S LSYL   P DT+K +   
Sbjct: 1375 LELELTESMIMGNPQDSVSILSKLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREF 1434

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +          AI  +II +A ++E  ++A+ +  +  +  L   GCD +Q   ++ PL 
Sbjct: 1435 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQAQLNFLGLQGCDEVQGFLLSKPLS 1494

Query: 946  FNSILKLLKER 956
                L LL  +
Sbjct: 1495 AKDCLTLLGNQ 1505



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 70/175 (40%), Gaps = 7/175 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             +                       + ++I       Q       F   I +  ER  L
Sbjct: 782 TLLVNLKVQAPFYRTPFAYTLYCLLAIGLLIWGLHWRKQKRQQQREFETSIRASEERLKL 841

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  SGD +WDW+I  ++V  T   A++   +S ++          +H  DR+ F+  L 
Sbjct: 842 ALWASGDGMWDWNIKENKVYRTNMDASVSHWSSHNLLH------ENMHPEDREKFKYELA 895

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
             +  R    + E+R+  A  ++ W++ R + + ++++   +R  G   +IT +K
Sbjct: 896 EHLQGRTPFFEIEYRIEGAFGKWIWILDRGKVVETDAHMQPMRMTGTNRNITSRK 950


>gi|288957506|ref|YP_003447847.1| signaling protein [Azospirillum sp. B510]
 gi|288909814|dbj|BAI71303.1| signaling protein [Azospirillum sp. B510]
          Length = 1077

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 136/553 (24%), Positives = 243/553 (43%), Gaps = 16/553 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTI 467
                + + ++  +  R  V      + I G     + G    +L      DR    F   
Sbjct: 516  VFDNASEGMFVANDQRQIVAANDAFSRITGYGRDEVLGQGPGFLRS----DRNPPGFYAE 571

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            L + +  R G    E        +     + +  + N +G +  YI    DITE +   E
Sbjct: 572  LWAQLR-RDGHWAGEIWSTRKSGEVFPEWLSVTVVRNEDGAVANYIAAFTDITETRAQEE 630

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I   A  D LT +PNR    DRL   +  +    + R  ++ +D+D++K IND LG  V
Sbjct: 631  RIRHLAQFDFLTDLPNRFLLRDRLERAMLAAGRHGS-RVGLLFVDLDRFKTINDSLGHQV 689

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +L  +  R+   ++  D ++R  G+ F I++   ++       A  + +S++ P  +
Sbjct: 690  GDSLLREVAARLVGTVRASDTVSRQGGDEFIILIGDMDDGEAAGIVARKVLRSVSEPYLI 749

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
               E+ VT SIG A +         +LK+A++AMY AK  G      F     R     +
Sbjct: 750  DGHELQVTPSIGIAIYPDDGTGIDALLKSADMAMYAAKEGGRATYRFFTPELNRRASDRL 809

Query: 708  --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
              + +L  A+ N+EL L + P   +    ++G EAL++W  P    I   +F+ +AE+  
Sbjct: 810  WTENNLRRALANNELELHFQPQFSMDGRRLIGAEALVRWRQPDGTLIMPGQFIPVAEDTG 869

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  +  ++L    R             + I +N+++  +    L E +   ++      
Sbjct: 870  LILPLGDWVLGEACRRAAELMRHR---TLVIAVNLSAVQVRRPGLAERVAGWLAAYGVPS 926

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S ++L  +ESV+M   +       +LR++G+ + +DDFGT  S L+YL     D +K + 
Sbjct: 927  SALELEVTESVLMDESDVVSETFAQLREMGVPVAIDDFGTGYSSLAYLKRFRVDKLKIDR 986

Query: 886  SLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S ++G         AI  +II MA+++    +A+ +  E     L R+GCD  Q   +  
Sbjct: 987  SFVSGLRAGNPDSGAIAEAIIGMARSLRMQTLAEGVETEEQYDCLARLGCDQCQGYLLGR 1046

Query: 943  PLGFNSILKLLKE 955
            P+ +   L L++ 
Sbjct: 1047 PMPYEEFLALVRR 1059


>gi|119776430|ref|YP_929170.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768930|gb|ABM01501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella amazonensis SB2B]
          Length = 1494

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 140/553 (25%), Positives = 274/553 (49%), Gaps = 10/553 (1%)

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            +  +    + V    +     +  P  + I G     + G   ++L   H   + +    
Sbjct: 944  AQVLASMNEAVVVGGLDYRIASVNPAFSLITGFNPEQVQGK--HFLFLTHDRKQRHIYEA 1001

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            ++  +  R      E ++R  D +   + + I  + +S  +   ++ +  DIT++KK+ E
Sbjct: 1002 IEQQLL-RNKHWAGELKIRTRDQRAILIWLEINQVLDSKAEASHFVAVFTDITDRKKAEE 1060

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +   A  D LT +PNR  F DRL   L  +    N+   ++ +D+D++K IND +G  +
Sbjct: 1061 DLRLLASYDPLTNLPNRTLFQDRLDHALAQAHRTGNM-VALLFLDLDRFKHINDSMGHHI 1119

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +L ++  R+   ++  D +ARL G+ F IIL     +      A  + ++   P  L
Sbjct: 1120 GDLLLKAVAHRLQNCVREGDTVARLGGDEFTIILEGVAKTKAATVIAEKLIRAFQTPFIL 1179

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705
             ++ + ++ SIG + +      S+ ++K A+ AMYHAK  G N+ + +  R++ +    V
Sbjct: 1180 EDQALNISPSIGISLYPMDASDSTSLVKYADTAMYHAKSLGRNNFQFYTLRLNEYAMRHV 1239

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             ++  +  A+   EL LV+ P  R+ D  I G EAL++W+  + G IS +EF+ +AEE+ 
Sbjct: 1240 QLEAGIKQAIVRQELSLVFQPKFRVSDGSITGFEALLRWNSKELGPISPAEFIPLAEEIG 1299

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  +  +++    R +  +        + + +N++++ L   ++   ++  ++      
Sbjct: 1300 IINQLGHWVVNEACRHMAQFAAAGFD-DLHVAVNLSARQLK-ADILSTIEVALAVAGLPA 1357

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
              ++L  +ES++M +P+ S  +L RL+ +G+SL +DDFGT  S L+YL   P DT+K + 
Sbjct: 1358 KCLELELTESMIMKSPQESVAVLQRLKALGVSLAVDDFGTGYSSLAYLKRFPLDTLKIDR 1417

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              +          AI  +II +A ++E  ++A+ +  E  ++ L + GCD +Q   +  P
Sbjct: 1418 EFVRDISTDPDDAAITGAIIALAHSLELNVVAEGVENEAQLEHLRKHGCDQVQGFLLGKP 1477

Query: 944  LGFNSILKLLKER 956
            +     + LLK R
Sbjct: 1478 MAARDAMALLKSR 1490



 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 10/185 (5%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSL 409
            L + +T         PA V   + +V ++G+              F   I +  ER  L
Sbjct: 766 ILTVPLTVVAPWYRTPPAYVLYTLTLVAILGWFWRERRVKRRQRREFETSIRTSEERLKL 825

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  SGD +WDWDI   +V  T     +       ++GP+   L  IH  D+      ++
Sbjct: 826 ALWASGDGMWDWDIPSGQVFRT----RMHPHTEQQLNGPV--LLDRIHPEDKPRVLHAIE 879

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
             +   R   + E+R+      + W+  R + +  +  G  +R +G   DIT +K +   
Sbjct: 880 QHIDGSRAFYEAEYRIENKPGHWIWITDRGKVVERDKQGKPVRMVGTHKDITSRKNAENE 939

Query: 529 ILCNA 533
           +  +A
Sbjct: 940 LRLSA 944


>gi|71908712|ref|YP_286299.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
 gi|71848333|gb|AAZ47829.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
          Length = 1038

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 249/565 (44%), Gaps = 17/565 (3%)

Query: 399  GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
                  E   +A +   + + +   D     +        + G ++    G     L   
Sbjct: 470  EARKADELMRIAAIAFETQEAMLVTDAKSQILRVNRAFTEVTGYSAAEAIGQTPALLKSG 529

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +  D  +F   L + +    G  + E   R  + + +   + I  +   +G+I  ++   
Sbjct: 530  YHED--SFYKDLWTSLKE-NGLWRGEIWNRRKNGEIYPEWLTISAVRGQHGEITHFVSSF 586

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DIT++K++ E I   A  D LT +PNR+   +RL+  L  S         ++ ID+D +
Sbjct: 587  LDITKRKEAEEQIQFLALYDPLTHLPNRRLLNERLSKALTSSGRQRR-HAALLFIDLDNF 645

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIA 631
            K IND +G  +GD +L  +  R+ E ++  D ++RL G+ F I+L        + + +I 
Sbjct: 646  KMINDSMGHDIGDLLLRQVALRLRESVRSNDTVSRLGGDEFVILLEELSPNIHDATTQIE 705

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              A  M  S+  P    E     TASIG   +  +  T   +LK+A++AMY AK  G N 
Sbjct: 706  HIAQKMLDSLVQPYKFGEFSHHCTASIGAIPFMDATETIESLLKSADMAMYKAKAAGKNR 765

Query: 692  VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            +  F  +          ++ DL  A    +  L   P +      + G EALI+W HP  
Sbjct: 766  LFFFDPAMQTEVEARAALERDLRQAQREKQFVLYLQPQVD-QSGHVSGAEALIRWQHPTH 824

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G I   EF  +AEE  +I  I  ++LE   + ++ W+   +   + + IN+++    + +
Sbjct: 825  GLILPGEFTHVAEETRLILPIGQWVLEEACKQLVIWQKNPDTAHLTLAINVSALQFRNPD 884

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR-KIGISLTLDDFGTKCS 868
              + +   I ++    SR+KL  +ES+++ + + +   +  L+ ++G+ L+LDDFGT  S
Sbjct: 885  FVDDVARAIHESGALASRLKLEITESLLLEDIDGTIERMQVLKNQLGVGLSLDDFGTGYS 944

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             LSYL  +P D +K + S +          AI  ++I + ++    +IA+ +        
Sbjct: 945  SLSYLKQLPLDQIKIDRSFVKDIHCNPNDAAIAEAVIALGRSFSLNVIAEGVETIEQRDA 1004

Query: 927  LTRMGCDYIQDSHVASPLGFNSILK 951
            L   GC   Q      P   ++   
Sbjct: 1005 LIARGCLTFQGYLFGRPGPIDAFPA 1029



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           +  +   L   L+L ++ + + +    L             ER SL +   G+ V+  D 
Sbjct: 320 STQVVGGLSTLLILSMLAVAYLIRSKRLVGAALR-------ERASL-LDSLGEGVYGIDQ 371

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI----LDSFVGYRRGRL 479
                   P    +LG  +  + G  ++   + H  D   + +       +    +  R 
Sbjct: 372 NGQCTFINPKALEMLGWTADEVIGSDQHARFHHHRPDGSIYPSADCPVYQTLRDGQ--RR 429

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           Q E      D +   +   + P+S         +    DI+E +K+ E +   A
Sbjct: 430 QGEEWFFNKDGRGFPVQYSVTPISRQEDK-EGAVVTFRDISEARKADELMRIAA 482


>gi|127514652|ref|YP_001095849.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
 gi|126639947|gb|ABO25590.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 830

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 133/573 (23%), Positives = 269/573 (46%), Gaps = 17/573 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +    +R   AV  S   +WDW++  + V  +     +LG     +   +  
Sbjct: 252 RFQQGAKQLKDSEQRWLFAVEVSRYGIWDWNLEDNSVFLSDRWKDMLGYGPEDLVPELAT 311

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510
           W   +H  D++     L++++       +   R+R     + W++ R   +  N  G  L
Sbjct: 312 WESRLHPEDKEGILKNLNAYLNGETEEFESVHRLRHQQGHYIWVLDRGMTVEWNEKGKPL 371

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R IG  +D+TE  ++ +  +  A  D LT + NR++ +D     L     +      + +
Sbjct: 372 RMIGTLSDVTEDIRNQKAAMHQAKHDPLTDLANRRALMD----ALYQQQDESGSCTALFM 427

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--- 627
           +D+D +K +ND LG   GD +L+ +  R+        ++AR++ + F +++         
Sbjct: 428 LDLDNFKVVNDALGHHGGDRLLIQIAARLSSYFSSNSLIARVAADEFVVLVKKLPEDLLG 487

Query: 628 --LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684
              +    A  MR+ IA   ++      ++AS+G A    S+     + LK   +A+  A
Sbjct: 488 AQRRAQALASQMRQLIARSFHISGHTFNLSASVGIAIIDPSETIPPEQQLKRVNMALAQA 547

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G +    +   +    +  +MI+ +L  AV   +L L Y P++     EI  +EAL+
Sbjct: 548 KESGRDACVVYSSEMDKRAAQNLMIRTELVHAVTRHQLSLFYQPLLNAK-GEIASVEALL 606

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS ++F+ +AE   +I  +  ++L    R I   ++Q   PP+ + IN+++
Sbjct: 607 RWHHPQHGAISPADFIPVAEGSALIVELGEWVLLEACRFIRGLQEQGIRPPM-VSINVSA 665

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    +E    +  ++     SP+ I+L  +E V++ + ++ R  + +LR+ G+S+ +DD
Sbjct: 666 RQFHQDEFAPKLLVMLKDQGISPAHIELELTEHVLLTDLQQVRQTMTQLREAGVSIAVDD 725

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P + +K + S +      +   +I++++I M+ ++    +A+ +  
Sbjct: 726 FGTGYSSLSYLQELPLNRLKLDASFIRDMGNGDASASIVKAMIDMSHSLNLEFVAEGVEI 785

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   ++L    CD  Q      P+    + +LL
Sbjct: 786 QSQFEQLKAYRCDLYQGYLFHRPMPGEELARLL 818


>gi|220934471|ref|YP_002513370.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995781|gb|ACL72383.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 926

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 142/578 (24%), Positives = 254/578 (43%), Gaps = 13/578 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              +  +     R    +    ++++  D         P    + G +     G   +  
Sbjct: 353 RQAALALKDSESRYREVIEHVSEVIFRTDHQGRWTLLNPAWEELTGYSIAESLGRPVS-- 410

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            ++   D      + +  +   + +L+ E R+     +  W+ + +R   ++ G ++   
Sbjct: 411 EFVSAEDSPLLEALTNQLLHGNKSQLRDELRLLTRAGEPRWVSVFVRSSQDAEGRVIATF 470

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G   DITE+K++ E I   AF D+LT +PNR    DRL   +  +A   +    ++ +D+
Sbjct: 471 GTLTDITERKRAEEEIRRLAFYDSLTELPNRSLLYDRLRLAMASAARSRH-HGAILFLDL 529

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----- 628
           D +K IND LG  VGD++L  +  R+   ++  D LARL G+ F IIL   +        
Sbjct: 530 DNFKDINDTLGHDVGDELLRQVASRMQGTIRETDTLARLGGDEFVIILNDLHPEQAQAAV 589

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +       +   +A P  L E E   T SIG   +   ++   E+LK A+LAMY AK  G
Sbjct: 590 EAETLGSKLLHLLAEPFRLGEHERHCTPSIGATLFGDGEVNVDELLKQADLAMYRAKDSG 649

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +  F     +  +    ++ D   A+   +L+L Y P +      I+G EAL++W H
Sbjct: 650 RNTLCFFEPEMHQVVKARAALEADFRKALREDQLHLHYQPHVDDQ-GHILGAEALLRWSH 708

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +   EF+ +AE+  +I  +  ++L+   + +  W  ++    I + +N+++K   
Sbjct: 709 PERGMVPPMEFIAVAEQTGLIIKLGRWVLQTACQQLALWHRESQWMRINMAVNVSAKQFR 768

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +    +  ++  T      + L  +ES+++ + E     +  LR++G+   LDDFGT 
Sbjct: 769 HPDFVREVAEILQSTGAPAQHLVLELTESLLLEDTETVITRMNALRELGVGFALDDFGTG 828

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL  +P   +K + S +          AI   II +AK +   +IA+ +      
Sbjct: 829 YSSLSYLKRLPLSLLKIDQSFVRDILVDANDAAIAEMIITLAKTLGLEVIAEGVETPEQR 888

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             L  MGC   Q      P   + + K L  R     N
Sbjct: 889 DFLLEMGCHQFQGYLFGRPGPVDQLEKRLVGRRTGTHN 926



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 80/241 (33%), Gaps = 29/241 (12%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           +     VT  IA + L+ +       +I   ++  +                 G      
Sbjct: 148 ALLERNVTLGIAMLALSILAAVLFGLVITRRLRRLD----------------AGARAFRA 191

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDI 417
            RLD+ I   A      L   L           +    Q   +    ER    + G+  +
Sbjct: 192 GRLDHRIPPLANDEMGDLARTLNALASDLGQSQSTLRQQNLKLNRSVERMEALLRGAEAV 251

Query: 418 VWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           +W+ +    +      D   ILG+++  + G        +H +D    R           
Sbjct: 252 LWEAEPATGQWRFVNGDTQAILGISAQQI-GQPGIREARVHADDLPRLRETYRQA---GP 307

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                ++R R+ +  + W+   +   S+S+G  +   G+  D++ Q+++       A +D
Sbjct: 308 TPSSVDYRYRSNEASWVWLRDIVSSASDSDGHAV-LRGLTLDVSPQRQAA-----LALKD 361

Query: 537 N 537
           +
Sbjct: 362 S 362


>gi|197116854|ref|YP_002137281.1| sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
 gi|197086214|gb|ACH37485.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 853

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 146/611 (23%), Positives = 268/611 (43%), Gaps = 17/611 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           + +      DI    +          +    I+ +       Q + +  E+    V    
Sbjct: 234 LLLATVGGRDIPVEVVSNCYQSEQSSVVQFNIRDISIRKNAEQALLTSEEQCRTIVSNIN 293

Query: 416 DIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           + V+           V  +P    I G      +     W   IH  DR+     L+   
Sbjct: 294 EYVYSVRFEEGDITSVYHSPKCFDITGYTPDEYYRDPLLWFTMIHEEDRNLVVEFLNGIF 353

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD---ILRYIGIANDITEQKKSLEGI 529
                      R+   D    W++          GD   I R  G   DIT+ K++ E I
Sbjct: 354 AG-LDHEPIRHRIIHKDGSVRWIVNNCAVQRQRRGDRLSITRLDGFILDITDIKRAEENI 412

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR +  +R+  ++  +         ++ +DID +K+IND +G  VGD
Sbjct: 413 FFLAHHDPLTKLPNRSTLYERMEQVICAAQKSSR-NVALLFLDIDGFKQINDSMGHDVGD 471

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L S+ +R+ +  +  D+++RL G+ F ++L     +           K I     +L 
Sbjct: 472 RLLQSVAKRLSDCTRSCDVVSRLGGDEFVVMLWDCGETETTVVA----EKVINAGFPVLG 527

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             +TVT SIG + +         +LK+A++AMYHAK  GGN+ + F             +
Sbjct: 528 SNVTVTPSIGISVFPDDGRDYLTLLKHADIAMYHAKKSGGNNFQFFTHRLNEIAHERFVL 587

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + +L  A++  E  L Y P + L      G+EALI+W HP  G +    F+ IAEE  ++
Sbjct: 588 EAELRRALDREEFVLYYQPKVDLSTGRFSGMEALIRWQHPAHGLMLPESFIRIAEESGLL 647

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ +++  + R I  W+ Q     +   +N+++      +  E ++  + +T  +P  
Sbjct: 648 TQISKWIIPTVCRQIQQWQQQGIN-SVSAAVNLSASFFQHPDFEETIEDSLLQTGIAPEC 706

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E+ +M +P+R    +  ++ +G+ L++DDFGT  S LSYL  +P D +K + S 
Sbjct: 707 LELELTEATIMSDPQRVLGSMAAMKALGLQLSIDDFGTGYSSLSYLKKLPVDKLKIDQSF 766

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          A++R++I + ++++  +IA+ +     +  L   G +  Q  + + PL 
Sbjct: 767 IHNIARDADNAAVVRAVISIGRSMQLRVIAEGVENASQLAWLQAEGSEEAQGYYFSRPLP 826

Query: 946 FNSILKLLKER 956
              +  LLK+R
Sbjct: 827 VAKMTALLKQR 837



 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 37/133 (27%), Gaps = 12/133 (9%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPI---RNWLP 454
            +     R       + D +   +     +    P +  ILG    ++ G       +  
Sbjct: 152 ALQRSEARYRRLFETAKDGIMIVEADSGAIAEVNPFLVDILGCKREALLGKTVWELGFFA 211

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I     D         +  +      +  +     +   + +      +    ++++  
Sbjct: 212 RIVPGASDF------KAMQQKEYFHGDDLLLATVGGRDIPVEVVSNCYQSEQSSVVQF-- 263

Query: 515 IANDITEQKKSLE 527
              DI+ +K + +
Sbjct: 264 NIRDISIRKNAEQ 276


>gi|297623706|ref|YP_003705140.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297164886|gb|ADI14597.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Truepera radiovictrix DSM 17093]
          Length = 685

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/704 (24%), Positives = 305/704 (43%), Gaps = 37/704 (5%)

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
                  V  + ++       L  ++F  P   A +     A    ++   +    + G+
Sbjct: 2   TRLRQRSVLRLLYASTLGFGALVGLAF--PPFAALLLDTERALEPSFFALCLAAGLLVGW 59

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITK--------RLDNDIIQPALVGGLVLIVILIGFTV 386
               L            +   M              D D+I P  V    +I  + G   
Sbjct: 60  ANCRLFGRVIAREL-GCVVRRMRALHEEVLRSPELTDGDLIAPLPVTSHDVIGEIAGAFN 118

Query: 387 IQHVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                      + +    E   R  L     GD+V   +        +P  A +LG A  
Sbjct: 119 TLAQGVIDRLQRALRDARESEARFRLLTENVGDVVCLHEPNDPLAYVSPSCAALLGYAPE 178

Query: 444 SMHGPIRNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           ++     + L ++H +D    R   L   +   R  L   +R R  D +  W+  R+R +
Sbjct: 179 TLLHT--DPLSWLHPDDAVRLRQGALREVLAGTRDTL--TYRARHKDGRDVWLETRVRAV 234

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G  ++ I  + DI+E+  +   +  +   D LTG+PNR  F DRL   ++      
Sbjct: 235 RDETGRTVQLISSSRDISERVAAQAALERSTLYDALTGLPNRVLFHDRLAGAIEREKRRP 294

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    V+ +D D++K +ND  G  VGD +L ++  R+   ++  D +ARL G+ F ++L 
Sbjct: 295 DNGFAVLSLDFDRFKAVNDAFGHGVGDALLGAIAERLRRCVRPSDTVARLGGDEFTLLLT 354

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              ++ +    A  + ++   P+ +    + ++ASIG     +      E+L++A++AMY
Sbjct: 355 DLADAGEALRAAERVLRAFQTPLTVRGHTLKISASIGVTVSATGYDHPEEVLRDADIAMY 414

Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G      F   +     +R+ ++ DL   +    L +VY PII +     VG+EA
Sbjct: 415 QAKTQGRAGYRLFSPTMRDRVLERLALEHDLRATLAYGALEVVYQPIIAVQRGVTVGVEA 474

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILIN 799
           L++W HP  G +S + F+ +AEE  +I  ++ F+L R    I   R +  M PPI + +N
Sbjct: 475 LVRWPHPLRGPVSPAVFVPLAEEAGLIPELDRFVLRRACAQISQLRARYPMAPPITLSVN 534

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++S                       S +KL  +E  +M   E    +L +LR +G+ L 
Sbjct: 535 LSSHSFAQPGFA-------------ASDLKLEITERTLMDQTETVAQVLSQLRDLGVGLH 581

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LSYL ++P  T+K + S +   TE  +   ++R+++ MAK +E  ++A+ 
Sbjct: 582 LDDFGTGYSSLSYLQHLPVSTLKIDRSFVERMTESAESAELVRTVVAMAKTLELEVVAEG 641

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           I     ++ L  +GCDY Q   ++ PL    + +LL+      +
Sbjct: 642 IETPEQLRALQELGCDYAQGHLLSKPLPLAGLEQLLRAPLATTR 685


>gi|114330442|ref|YP_746664.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas eutropha C91]
 gi|114307456|gb|ABI58699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas eutropha C91]
          Length = 791

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 138/578 (23%), Positives = 261/578 (45%), Gaps = 21/578 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
            +     ++ +       +       + V   D+    V        I G +   + G  
Sbjct: 219 AVQKVRATEALRLS----ATVFASIREGVVITDLEPRIVAVNRAYMRITGYSEEQVLGKN 274

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIRPMSN-- 504
            +     +H  D+  ++ +  +      G    E   R  + + +  W+ I    + +  
Sbjct: 275 PKIIKSGLH--DKTFYQAMWATLKA--TGHWSGEVWNRRKNGEIYPQWLTINAVCIDSSC 330

Query: 505 -SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               +   Y+G+  DI++ K+S   +   A  D LTG+PNR     +L   ++ +     
Sbjct: 331 CDESNSCNYVGVFTDISQIKQSEAQLAQLAHYDPLTGLPNRLLAQSQLHQAIERAQRHGR 390

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   V+ ID+D++K +ND LG  VGD++L+ L  R+ + ++  D LARL G+ F ++L  
Sbjct: 391 L-VGVLYIDLDRFKNVNDSLGHPVGDELLIKLAERMKKRVREEDTLARLGGDEFLLVLED 449

Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +    A  A ++   +  P  L    EI + ASIG + +      ++E+++++++AMY
Sbjct: 450 VRDLGDPAFVAQSLINLLTSPFVLPSGHEIFINASIGISLFPEDASNATELIQHSDMAMY 509

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N         S   ++R++++  L  A+   EL L Y P++      +VG+EA
Sbjct: 510 QAKKEGRNTYRYHTEALSVAANERLIMENRLRYALSAEELILHYQPLVDARTGYVVGVEA 569

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W  P    +   +F+ IAEE  +I  +  ++L    +   +W D     P+ + +N+
Sbjct: 570 LVRWQPPGKAMVPPGKFIPIAEETGLIVPLGEWVLRTACKQARAWIDAGL-SPLVMAVNL 628

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +      L   +Q ++ +T      ++L  +ES+ M + E+S   L +L+ +G+ L +
Sbjct: 629 SVRQFQSENLVGMVQRILEETQLPADYLELELTESMFMEHVEQSIETLNKLKTLGVHLAI 688

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL   P D +K +   +           I  +II MA+ ++  ++A+ I
Sbjct: 689 DDFGTGYSSLIYLKRFPIDKLKIDQRFVRDLADDHNDREIAATIIAMARGLKLGVLAEGI 748

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             E  +  L +  CDY Q      P+    +   L+E 
Sbjct: 749 ESEEQLAFLRQQDCDYYQGYLFHRPVPAIELEAWLREH 786



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 28/58 (48%)

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             G+L +++R    D +  W++ +++ + ++       +G   DI+E+K++       
Sbjct: 9   SEGQLVHDYRFYHRDGRIVWLLDQLQLIRDAGDRPYEVVGTCLDISERKRTELIRQAQ 66


>gi|56750209|ref|YP_170910.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300164|ref|YP_400372.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
 gi|56685168|dbj|BAD78390.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169045|gb|ABB57385.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus elongatus PCC 7942]
          Length = 929

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 155/567 (27%), Positives = 275/567 (48%), Gaps = 17/567 (2%)

Query: 398 QGIFSDGERQSLA---VLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRN 451
               +  ++  L    +  S + V   D        +   P    I G +   M G    
Sbjct: 360 AERKASEQQLRLLKESLEASFNGVVIVDAIEPDMPVIYVNPAFERITGYSEAEMLGRNCR 419

Query: 452 WLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            L     N+RD+ +   +   +      +    R    D Q  W  + I P+ N+ G++ 
Sbjct: 420 ILQG---NERDSLQIEEIHRGLSQ-AENVHVVIRNFRKDGQPFWNDLYISPIFNAQGNVT 475

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +IG+ NDITEQK+  E +  +A  D LTG+PNR    DRL     ++    +    ++ 
Sbjct: 476 HFIGVQNDITEQKRYEEELSFSASHDVLTGLPNRAVLEDRLRQGCKMALRQKH-SLAILF 534

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND +G   GD +LV + +R+ E ++  D +AR+ G+ F I+L+       +
Sbjct: 535 IDLDGFKLINDSIGHRSGDLLLVEVAQRMCEQVRAGDTVARIGGDEFIILLVDLKLENDV 594

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  +  S+A P ++    + VTAS+G           +++++ A+LAMY AK  G N
Sbjct: 595 ISIADRLLASVARPYHIQGIYLHVTASMGITLSDGDIEQPTQLIQQADLAMYKAKQEGRN 654

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + + +    +    +RV ++ +L  A+E     L + P I     +++GLEAL++W HP+
Sbjct: 655 NYQWYTNDLNLRLRERVHLRNELQKAIETEAFELYFQPKIEGCSGQVIGLEALLRWQHPQ 714

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS + F+ IAE+   I  ++ ++LE   R +     Q    P  + +NI++      
Sbjct: 715 MGFISPATFVPIAEDTGQIIPLSQWVLETACRQLRDLLQQGIAAP-SVAVNISTVQFRRI 773

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + +Q+ + K       +++  +E+V+  N E++   L RL+++G+++++DDFGT  S
Sbjct: 774 NFVKSVQSALQKYQLKSEHLEIEITENVLFDNTEKAIEKLQRLKELGVNISIDDFGTGFS 833

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P DTVK + S +          AI + II MA ++   ++A+ +  E   K 
Sbjct: 834 SLSYLKELPIDTVKIDRSFVQEINTDSRDAAITQGIISMAHHLRLNVVAEGVETEQQFKF 893

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L +  CD  Q  + A P+ F ++ + L
Sbjct: 894 LQQSNCDQYQGYYFAKPMPFEALKQYL 920



 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 45/166 (27%), Gaps = 15/166 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442
              I++ +     +  +     R  L    + + +W +       +      +   G + 
Sbjct: 120 LRSIRYAIDRNLATTRLAESESRYRLLFEANPEPMWVFAKQGLQFLAVNQAASQFFGYSQ 179

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                     L      ++  F    +S +           +  R       +  + I  
Sbjct: 180 QEFL--AMTVLDIQSEEEKTRFLQFFESLICNQIVDPAVGVWAYRHKQGHLVFADVLIHD 237

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE--GILCNAF-------QDNL 538
               N      + I  DITE++ + E       AF       +D L
Sbjct: 238 FEFDNQPCCLILAI--DITEKQAARELAHQREQAFRKLLNDNRDPL 281


>gi|315182729|gb|ADT89642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio furnissii NCTC 11218]
          Length = 993

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 137/579 (23%), Positives = 275/579 (47%), Gaps = 11/579 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L ++ +       +  +    +      ++  + +  S D +W WD++ +R++    +  
Sbjct: 409 LDILSLFVERDALIETSVQRHKKSQQLLQQLKVVLNSSNDGIWQWDLLANRLSWNGRLTK 468

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +L LA  S     +  L  +H +DR  F  +L +++       +   R+R  D  + W+ 
Sbjct: 469 MLKLADTSDAINPQVLLNRVHPDDRPAFEEMLQTYLDV-SEPFKCILRLRRDDGHYIWVQ 527

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +    + N+ G  +R +G   DITEQ++S + I   A+ D LTG+ NR+  ++ +   + 
Sbjct: 528 LSGAVIHNTQGRPIRLVGSMTDITEQQESADKIHQMAYYDGLTGVANRRKLMEVIEHHI- 586

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 N    VM++D++++K IND  G  VGD +L  +   + + L+  DI+ R  G+ 
Sbjct: 587 --QHHPNSTKAVMMMDLNRFKIINDTFGHQVGDALLCHVAEALQQTLRAEDIIGRFGGDE 644

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F      +N+     + A  + +++  P+     E+   ASIG A +    +   E++KN
Sbjct: 645 FVFFCDVQNDYQ-AHELANRLLRAVKRPMQYDNMELVGEASIGVAFYPQHGVDGDELIKN 703

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK  GG  V  F  +        + I+  L LA++  E+ + Y P+     + 
Sbjct: 704 ADVAMYRAKQLGGGEVVLFNSNMHEPFKTHLRIEHLLGLAIDQGEIQVHYQPVFSRQHDH 763

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+ +E L +W     G ++ SEF+++AE   +I  +  ++++R+ +D+ +     N+   
Sbjct: 764 IIAVEVLARWHSATLGQVNPSEFIVVAENSFLIMKLGDYIIDRVCQDVKTSPWLQNLQ-- 821

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++++ L  +   + +   ++      S   L  +E+  M + E+    L  L+  
Sbjct: 822 HISVNVSARQLGHSRFADNLAQKVNDYGLPASLFCLEMTETAAMADKEQCLRTLIALKNA 881

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G +L+LDDFGT  S LS L  +P   VK + S +         ++ ++ +I M +++   
Sbjct: 882 GFTLSLDDFGTGFSSLSLLKRLPISEVKIDRSFIADIEAHPANLSFVKGLISMVQSLGHR 941

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++A+ +  E   + L  +G D +Q  ++A P       +
Sbjct: 942 VVAEGVETESQTQLLRALGVDLMQGFYLARPASLREFEQ 980


>gi|220935752|ref|YP_002514651.1| hypothetical protein Tgr7_2589 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997062|gb|ACL73664.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 759

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 258/562 (45%), Gaps = 13/562 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               + + +   D     +        I G + G + G     L   H +    F   + 
Sbjct: 195 VFESTAEGIAITDSRMRFLQVNEAYCRITGYSDGELLGRTPRMLKSGHHD--AAFYADIS 252

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  R G  + E   R  D +   ++  I  + ++ G +  YI I  DI+  K++   +
Sbjct: 253 KTLEVR-GHWRGEILDRTRDGRVIPLLQTISVVRDTQGAVSHYITIVTDISSIKETQSRL 311

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR  F  RL   +D +  +      ++ ID+D++K IND LG  +GD
Sbjct: 312 DFLAHHDPLTELPNRLLFTARLEHAIDWAVRNQ-AHFGLLFIDLDRFKTINDSLGHQLGD 370

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +LV + RR+  L++  D +ARL G+ F +++   +N+ +    A  +  ++  P  L E
Sbjct: 371 RLLVQVARRLRGLVRKSDTIARLGGDEFVVLVEGIHNAGEAELLAEKLVHAMRQPFFLEE 430

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707
            E+ +  SIG   +         +LKNA+ AMY  K  G +    F         +R+ +
Sbjct: 431 TELHIGCSIGITLYPEDGEDPVTLLKNADAAMYRVKDFGRDGFCKFSQDLAEAVDERLAL 490

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+  ++L + Y P+I L    +V +EAL +W H + G I+   F+ +AEE  +I
Sbjct: 491 ETALRQALRENQLQVHYQPVIDLAQGRMVAVEALARWRHAERGEIAPCSFIRLAEETKLI 550

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  +M          WR++      ++ IN +  +L D    +G+   + +       
Sbjct: 551 LPLGGWMARTAIGQFRLWRERGMELD-YVSINTSGIELFDPGFVDGLFEALDEHGLEGRH 609

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E+V+M + E  R +L RLR+ G+ + +DDFGT  S L+YL  +P D +K + S 
Sbjct: 610 LQIELTENVLMQDYEACRRVLLRLRQQGVRIAIDDFGTGYSSLAYLKQLPIDMLKIDRSF 669

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          AI+ +II MA  +    +A+ +  E     L  +GC+ +Q    A PL 
Sbjct: 670 IKDVPGDPGDCAIVETIIAMAHRLGLATVAEGVETEEQEDYLLAIGCERLQGYRYARPLD 729

Query: 946 FNSILKL----LKERFPLVKNT 963
             S+ +L    +++  P   ++
Sbjct: 730 PVSLERLHADSVRQAAPDSASS 751


>gi|77919642|ref|YP_357457.1| motility repressor MorA [Pelobacter carbinolicus DSM 2380]
 gi|77545725|gb|ABA89287.1| motility repressor MorA [Pelobacter carbinolicus DSM 2380]
          Length = 643

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 158/596 (26%), Positives = 272/596 (45%), Gaps = 24/596 (4%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI----VR 425
           AL  G   ++      + ++ +     +Q +    +          D ++DW++      
Sbjct: 39  ALTAGFTFLIAAFCVAMGRYTIT----AQKLHESEKLFR----TFADFIYDWELWISAEG 90

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             + T+P    I G A+ +           IH  D   +    D          + EFR+
Sbjct: 91  SLIHTSPACERISGYATTAFKNDSDLLRRIIHPEDLQRY----DRCENEATPGFR-EFRM 145

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D Q  W+ +  R + N  G  L       DIT +K     I   A+ D LTG+PNR 
Sbjct: 146 IRRDGQLRWVELLSRQLRNEEGKDLGRRLTIRDITGKKAREHEIRQIAYSDALTGLPNRL 205

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +    +   L  ++ +      V+++D+D +K+IND  G A GD++L+ LT R+ E L  
Sbjct: 206 ALKMDMDKALAKASRN-TAMVAVLMLDLDDFKQINDTTGHAKGDEMLLLLTSRLREQLGE 264

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWT 664
            D LARL G+ F ++L   +++   A     +  S+   P +L+  ++  +ASIG A + 
Sbjct: 265 KDSLARLGGDEFVVVLNEIDSATCAAKKTEKILASLRDNPFDLVVAKVFASASIGIALFP 324

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYL 722
            +   +  +LK+A++AMY AK+ G N    F         +R  ++  L  AV   E +L
Sbjct: 325 QNGRDAETLLKHADMAMYEAKNVGRNTYRFFSDELHRRTIERHKLEVGLRRAVRKKEFFL 384

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           VY P + L    IV LEAL++W HP+ G +  S F+ +AEE  +I  +  ++L       
Sbjct: 385 VYQPQVDLGTGRIVALEALVRWQHPEAGVLLPSTFIPVAEETGLIHIMGEWILRTACHQA 444

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           + W+     PP+ I +N +++     +L E ++ ++ ++   P  ++L  +ESV M N E
Sbjct: 445 MQWQRMGL-PPMRIAVNFSARQFRQPDLVERIEQILLESGLPPHHLELEITESVFMENLE 503

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +   L  L+   I + +DDFGT  S L+YL   P D +K     +      E    I+ 
Sbjct: 504 SAIETLVDLKTRAIQIAIDDFGTGYSSLNYLKNFPLDRLKIAQDFVRDIPDDEDDATIIE 563

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +I+ MA  +   ++A+ +     +  L R GC  +Q  + A P+    I   L +R
Sbjct: 564 TIMAMANRLGIKVLAEGVETMEQVTFLRRKGCHEMQGFYFARPMQAEEIAGFLNQR 619


>gi|260770222|ref|ZP_05879155.1| hypothetical protein VFA_003289 [Vibrio furnissii CIP 102972]
 gi|260615560|gb|EEX40746.1| hypothetical protein VFA_003289 [Vibrio furnissii CIP 102972]
          Length = 993

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 137/579 (23%), Positives = 275/579 (47%), Gaps = 11/579 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L ++ +       +  +    +      ++  + +  S D +W WD++ +R++    +  
Sbjct: 409 LDILSLFVERDALIETSVQRHKKSQQLLQQLKVVLNSSNDGIWQWDLLANRLSWNGRLTK 468

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +L LA  S     +  L  +H +DR  F  +L +++       +   R+R  D  + W+ 
Sbjct: 469 MLKLADTSDAINPQVLLNRVHPDDRPAFEEMLQTYLDV-SEPFKCILRLRRDDGHYIWVQ 527

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +    + N+ G  +R +G   DITEQ++S + I   A+ D LTG+ NR+  ++ +   + 
Sbjct: 528 LSGAVIHNTQGRPIRLVGSMTDITEQQESADKIHQMAYYDGLTGVANRRKLMEVIEHHI- 586

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 N    VM++D++++K IND  G  VGD +L  +   + + L+  DI+ R  G+ 
Sbjct: 587 --QHHPNSTKAVMMMDLNRFKIINDTFGHQVGDALLCHVAEALQQTLRAEDIIGRFGGDE 644

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F      +N+     + A  + +++  P+     E+   ASIG A +    +   E++KN
Sbjct: 645 FVFFCDVQNDYQ-AHELANRLLRAVKRPMQYDNMELVGEASIGVAFYPQHGVDGDELIKN 703

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK  GG  V  F  +        + I+  L LA++  E+ + Y P+     + 
Sbjct: 704 ADVAMYRAKQLGGGEVVLFNSNMHEPFKTHLRIEHLLGLAIDQGEIQVHYQPVFSRQHDH 763

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+ +E L +W     G ++ SEF+++AE   +I  +  ++++R+ +D+ +     N+   
Sbjct: 764 IIAVEVLARWHSATLGQVNPSEFIVVAENSFLIMKLGDYIIDRVCQDVKTSPWLQNLQ-- 821

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++++ L  +   + +   ++      S   L  +E+  M + E+    L  L+  
Sbjct: 822 HISVNVSARQLGHSRFADNLAQKVNDYGLPASLFCLEMTETAAMADKEQCLRTLIALKNA 881

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G +L+LDDFGT  S LS L  +P   VK + S +         ++ ++ +I M +++   
Sbjct: 882 GFTLSLDDFGTGFSSLSLLKRLPISEVKIDRSFIADIEAHPANLSFVKGLISMVQSLGHR 941

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++A+ +  E   + L  +G D +Q  ++A P       +
Sbjct: 942 VVAEGVETESQTQLLRALGVDLMQGFYLARPASLREFEQ 980


>gi|302878359|ref|YP_003846923.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302581148|gb|ADL55159.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1301

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 151/608 (24%), Positives = 274/608 (45%), Gaps = 14/608 (2%)

Query: 355  WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             ++   ++              +   L       H+ +         +   + S AV  S
Sbjct: 698  ILSTKGQVLGTFALYYSKSRSPMADELAALERGAHLASLAIERAQTGAWLNKLSQAVEQS 757

Query: 415  GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFV 472
             + +   D+  +            G     + G        +H      + +  +     
Sbjct: 758  PNSIVITDLNANIEYANDAFVKTTGYTLPEVMGKNP---RILHSGKTTVETYAAMWTQLN 814

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +    + E   R  D   +  + RI P+ +++G +  Y+ I  DITEQK+    I   
Sbjct: 815  SGQ--MWRGELINRRKDGTEYVELARISPLRHTDGRVTNYLSIKEDITEQKQVEARIRQL 872

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D LTG+PN+    DR    + ++    +    V+ +DID +K IND LG  +GD++L
Sbjct: 873  AHFDLLTGLPNQTLLKDRAGFAMQMAQRSAH-HLAVLFLDIDHFKNINDTLGHRIGDELL 931

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            V L +R+  LL+  D L+R  G+ F ++L    ++   A  A  + +++A    + + E+
Sbjct: 932  VHLAKRMKLLLRDEDTLSRFGGDEFILVLPD-TDADGAAHVAEKILETVAKTCYIEQHEL 990

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KED 710
             VT SIG A + S  +   ++ ++A++AMY AK  G N+   F           +  +  
Sbjct: 991  VVTPSIGIAMYPSDGMDFDKLYQSADVAMYRAKQDGRNNFRFFTSEMQARSARRLLLENA 1050

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L  A+  ++  L Y P I + D +IVG EAL++W HP+ G+IS +EF+ +AEE  +I +I
Sbjct: 1051 LRQALSRNQFELHYQPQISMQDGKIVGAEALLRWYHPELGSISPAEFIPVAEESGLILSI 1110

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++L    + +  W+D    PP+ + IN+++       L E +  ++ +   +P  I+L
Sbjct: 1111 GEWVLRTAVQQVKRWQDA-GHPPVTVAINLSAVQFRQARLSELVMQILHEANLAPHWIEL 1169

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ESV M NP  +  ++  L   GI +++DDFGT  S LSYL     + +K + S +  
Sbjct: 1170 ELTESVAMDNPLVAIGVMNDLHGCGIRMSIDDFGTGYSSLSYLRKFKVNKLKIDQSFVRD 1229

Query: 891  STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +     AI+ +II +A ++    IA+ +     +  L   GC+ +Q  + + PL    
Sbjct: 1230 LADDIESRAIVTAIITLASSMGFQTIAEGVETAGQLAFLRLQGCNEVQGYYFSRPLTVAL 1289

Query: 949  ILKLLKER 956
                +   
Sbjct: 1290 FEAFVLGH 1297



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 11/201 (5%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVG-GLVLIVILIGFTVIQH--VLATGYFSQGIFS 402
           +  +  +         +  D     L    L  ++  I  TV+    +         +  
Sbjct: 215 VFEMAGLMQASRYRHLVVVDDAGLVLGMVTLHKLMARIAATVMNEETLRRQESLEHSMHH 274

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              +  L V    D++W  D+    ++  P      G     + G       ++     D
Sbjct: 275 AESQLRLIVKTIPDLIWLKDVEGVYLSCNPMFERFFGAIEADIVGKTDY--DFVSREQAD 332

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            FR    + +   +  +  E+   A D     +     PM N+ G ++  +GIA+DITE+
Sbjct: 333 FFRAHDRAAMLADKPSINEEWVTFADDGHRACLETTKSPMFNAVGQLIGVLGIAHDITER 392

Query: 523 KKSLEGILCNAFQDNLTGIPN 543
             + + I        LT + N
Sbjct: 393 LAAAKKIER------LTQLYN 407


>gi|94266037|ref|ZP_01289757.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93453397|gb|EAT03822.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 751

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 259/563 (46%), Gaps = 13/563 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            Q +     + ++      +     D     +   P  + I G A   + G   R     
Sbjct: 194 RQQLEEWLRQSAMVYENMWEGAVITDPAGTILDVNPAFSRITGYAKDEVIGKNPRILKSD 253

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H      ++ +    +   +G+ + E   R  + + +   + I  +S++ G    Y+G+
Sbjct: 254 RHEQ--AFYQHMWRELIE--KGQWRGEIWNRRKNGEVYPEWLSISGVSDARGQTSYYVGV 309

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+++ K+S   +   A+ D LT +PNR     RL   L+ +      +  V  ID+D+
Sbjct: 310 FTDLSQLKQSEAKLESLAYYDPLTALPNRLLLHSRLEHALEWAERHQ-TKVGVYFIDLDQ 368

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           ++ +N+ L    GD +LV +++R    L+  D LAR  G+ F +I  +  +  +  + A 
Sbjct: 369 FRVVNESLSYQAGDQLLVMVSKRFLSCLRVDDTLARPGGDEFVLIQEALADPQEATETAR 428

Query: 636 AMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            +  S+  P  L   +EI + ASIG   +     T  ++LKNAE AMYHAK  G N    
Sbjct: 429 ELLASLDQPFQLDGGQEIYLGASIGITVFPGDGTTPPDLLKNAEAAMYHAKENGRNRFSF 488

Query: 695 F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGN 751
           +  ++++    R+ ++  L  AVEN EL L Y P  +L D   ++G EALI+W + +   
Sbjct: 489 YAEQMNADALARLQMEMALRQAVENRELLLYYQPQWQLADSPSVIGAEALIRWRNKEGEL 548

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I+  +F+ +AE+  +I AI  ++++   R +  WRDQ     + + +N++++      L 
Sbjct: 549 IAPDQFIPLAEKSGLIGAIGDWVIDEACRQLRIWRDQ-GKKQLRVAVNVSARQFRAGNLA 607

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +   + K        +L  +ES++M  PE +  LL R   +G+ + LDDFGT  S L+
Sbjct: 608 EVVAQALRKHEIPAHCFELELTESILMEKPEEAAELLNRCAALGVGIALDDFGTGYSSLA 667

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P   +K + S +     +  A  I  SII +A  +   ++A+ +  E     L  
Sbjct: 668 YLSRFPITVLKIDRSFVRDLNHRSEAALIADSIIALAHRMGLQVVAEGVETEEQRAYLQS 727

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
            GCD  Q    + PL      + 
Sbjct: 728 RGCDLAQGFLFSPPLPAEQFAEF 750


>gi|307822295|ref|ZP_07652527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736861|gb|EFO07706.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 874

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 141/563 (25%), Positives = 262/563 (46%), Gaps = 17/563 (3%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454
            + +   +  L       S + ++  D     +       +I G     + G   R    
Sbjct: 310 ELKNRETQLQLSAKVFENSSEAIFITDPQGTIMEVNAAFCSITGYERSEVLGRNPRILKS 369

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H  D+  ++ +  S +    G  + E   R  + +F  M++ I  +++  G +  Y+ 
Sbjct: 370 KLH--DKPFYKRLWRSLLDE--GGWKGEIWDRRKNGEFCPMLLSINAVADKLGQLTHYVA 425

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I+ DI++QK++   +   A+ D LT +PNR  F +R    + L+  + N R  +  +D+D
Sbjct: 426 ISTDISQQKQTERELKQLAYYDVLTSLPNRSLFKNRFEHEICLAERN-NTRLALFFLDLD 484

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND LG   GD +L   + RI   L+  D +AR+ G+ F IIL          + A
Sbjct: 485 HFKNVNDTLGHWAGDCLLQITSTRIQSCLRKTDTVARMGGDEFTIILPGLTGITDATELA 544

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ + +  + V  SIG A +         + K+A+ AMY AK +G    + 
Sbjct: 545 RKLIDAMTKPVQIKDHTVFVGVSIGIAIFPDDGNDFYTLTKHADTAMYAAKAKGRGLFQY 604

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +   ++     R++++  L LA+E  E  L Y P        I G EALI+W  P +G I
Sbjct: 605 YEEGMNEAAHQRLLLENALRLAIEREEFQLYYQPKADSNLSRITGAEALIRWRRPGFGII 664

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ IAEE  +I  +  ++L+        W +Q   P   + IN++   LL ++   
Sbjct: 665 PPDRFIAIAEETALIIPLGKWILKTACLQAKVWVNQL--PGFRLAINLSPLQLLADDFIV 722

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++++T   P  I+L  +E ++M +  ++   L ++R+ GI + +DDFGT  S LSY
Sbjct: 723 VLDRILAETDTKPEWIELEVTEGLIMLDIVKATERLHQIRERGIHVAMDDFGTGYSSLSY 782

Query: 873 LGYIPFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           L  +P  T+K + S +            A +++I+   + +  T++A+ +  E  +  L 
Sbjct: 783 LQKLPIHTLKIDRSFIMAYTNDPASSEAAFIKTIVSFGQVLNMTVVAEGVETESQLALLQ 842

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
             GCD IQ  +++ PL  +   +
Sbjct: 843 SYGCDEIQGYYLSPPLPADEFQR 865



 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 47/158 (29%), Gaps = 21/158 (13%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +    +  Q +    +R    +    D++   D     +     +   LGL    + G  
Sbjct: 172 LKEKVHQQQALSRFVDR---VMDTIDDLLVVIDTEGRILRLNTAVERELGLTEAELLGTG 228

Query: 450 RNWLPYIHINDRDNFRTIL--------DSFVGYRR--GRLQYEFRVRAADN----QFHWM 495
            +    +   ++ +    L           +   R  G    E  +   +       +W+
Sbjct: 229 ID--ELLTPLEQQHLAGQLPGLPWPIRSVLLETIRLNGYYAGEHELLGKNRDNAKSIYWL 286

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 + +  G +   +  A +ITE K     +  +A
Sbjct: 287 KSS--LLHSEQGKLEGAVVTALNITELKNRETQLQLSA 322


>gi|70732952|ref|YP_262723.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
            Pf-5]
 gi|68347251|gb|AAY94857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
            fluorescens Pf-5]
          Length = 1241

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 154/574 (26%), Positives = 273/574 (47%), Gaps = 12/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
            +  +       + +    ++ +     + + V   D  +         + I G +   ++
Sbjct: 658  MLTIARDITDRRLMQEKLQQAATVFESTAEGVMITDTQQRISAVNRAFSEITGYSEREAL 717

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                R     +H  D   +  +         G  Q E   R  + + +   + I  + N 
Sbjct: 718  GHTPRLLASGLH--DSAFYAAMWHQL--TLEGHWQGEISNRRKNGELYPNWLTINAVRNR 773

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
               I  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL + L+ S  D+  +
Sbjct: 774  ENQITHFVAVFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLLSALN-SQQDNGSQ 832

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F I+L   +
Sbjct: 833  GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAVRLKEQLRDIDTVARLGGDEFIILLPGLH 892

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
             +      A  +      P    E E  ++ASIG + +       + ++KNA+ AMY +K
Sbjct: 893  QASDADHIATKLLNCFTAPFQAGEHEFFISASIGTSLYPKDGCDVATLIKNADAAMYRSK 952

Query: 686  HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G N VE +     +  S+RV ++ +L  A+E +EL L + P I L + E+VG EALI+
Sbjct: 953  AKGRNRVERYTRDLTAQASERVALEHELRRAIERNELSLYFQPKISLSNHELVGAEALIR 1012

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP +G++    F+ +AEE  MI  I  ++LE+    + +W  +       + +N+A  
Sbjct: 1013 WHHPTFGDVPPEHFIPLAEENGMILLIGDWVLEQACLQLNNWNRRFEDFG-PLSVNLAGA 1071

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L    L   ++ L+      P  ++L  +E+ +M   E +  +L +L+++G+ L +DDF
Sbjct: 1072 QLRQPNLLGRIEQLLRDYDLQPGMLQLEITENFIMSQAEEALEVLHQLKRLGVQLAIDDF 1131

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P D +K + S + G       +AI+R+II + ++++ T+IA+ +  +
Sbjct: 1132 GTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDVAIVRAIIALGRSMQFTVIAEGVENQ 1191

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
                 LT  GC+ IQ   V+ PL         L+
Sbjct: 1192 EQQTFLTLEGCEQIQGYIVSLPLEAEEFCTTFLR 1225



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATIL 438
           I I   +   +       Q + S        V     I W+  I        +P    +L
Sbjct: 280 IRINRRLSSEISRRVALEQELRSSEYHYRSLVESLSAIAWEARISDFTYSYVSPHAEALL 339

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G            W   IH  D    +   D  V   R     ++RV AAD +  W+   
Sbjct: 340 GYPLAHWL-IPGFWRNIIHPADLTRAQAFCDHEVQAGRDH-SLDYRVIAADGRCLWVRDI 397

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  +   +G      G+  DI+E K + E
Sbjct: 398 VSLI--EHGHEPVMRGLMIDISETKHTEE 424



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGL-A 441
             V++ +       Q + +  E+ + A   S D +          +      + I G  +
Sbjct: 534 VVVVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLTRQRDGLLIEVNEGFSRITGFNS 593

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           + S+     +   ++++N+R     +L            +   +R  D Q     +  RP
Sbjct: 594 AMSLDRSTLDLGIWVNLNERKQMLDLLQR----DGFVRDFNCHIRRNDGQIRLCELSSRP 649

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    G     + IA DIT+++   E +   A 
Sbjct: 650 L--PIGGDDCMLTIARDITDRRLMQEKLQQAAT 680


>gi|307823159|ref|ZP_07653389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735934|gb|EFO06781.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 709

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 147/571 (25%), Positives = 272/571 (47%), Gaps = 12/571 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    E+    +      +          +       +LGL    + G +  
Sbjct: 140 ELIQIEDALRQSEEKHRFLLEQINAGIMIHAPDTRVASCNRQTCNLLGLNEQQILGKVAA 199

Query: 452 WLP---YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSN 506
                          F     +  +   +        +  +D +   W++    P  N  
Sbjct: 200 DFECAFICEDETPMRFDQFPANQVIRQNKAVKNLVIGIVRSDLSDNRWVMANAFPEFNDE 259

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+IL       DITE  KS E I   A  D+LT +PNR    +R+   +  S+  +N   
Sbjct: 260 GEILNITVTLIDITEHVKSQEEIHRLAHYDSLTQLPNRFLIHERIDQAI-HSSRRENQSF 318

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K +ND LG   GD +L  ++ R+ + L+  D+  RL G+ F ++L +   
Sbjct: 319 ALLFLDLDNFKIVNDSLGHHRGDLLLQQVSDRLKDCLRKGDMAGRLGGDEFVVLLPN-TG 377

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +   A  +  + ++I  P ++ E  + +  SIG + + +  + S  + ++A++AMYHAK 
Sbjct: 378 ADGAAHVSSKIIEAINAPFDVEEYLLNIGTSIGISIYPNDGLESDTLTRHADIAMYHAKA 437

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GG     F          R++++ D+ LA++  +  L Y P I L   ++V +EALI+W
Sbjct: 438 SGGGRNCFFDSEMNARIEYRLVMERDMYLALDQHQFQLHYQPQIDLSSGKMVAVEALIRW 497

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS +EF+ IAE+  +I  I L++L+R  RDI +W  +   P I + IN++ + 
Sbjct: 498 PHPQRGMISPAEFIPIAEDSGLIMQIGLWVLQRACRDIKTWLAE-GHPRIKVAINLSLRQ 556

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L + +L   +  +I +T   P+ ++L  +ESV+M N + +   + + R  GI+ ++DDFG
Sbjct: 557 LQNPQLFAQIIDIIDETGIPPACLELELTESVMMENHDVTLDFMAQCRNFGINFSIDDFG 616

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL  +P D +K + + +    +   A  I+ +II MAK++   I+A+ +  E 
Sbjct: 617 TGYSSLSYLTKLPLDKIKIDRAFVKDIAKDSDANTIVSAIISMAKSLRLKIVAEGVETEE 676

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  L   GCD +Q  + +  + +  + +++
Sbjct: 677 QLNYLKECGCDTVQGFYFSPAISYAMLTQMI 707



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 11/138 (7%)

Query: 404 GERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +R +  +  +   ++             + +I  + G  +         W+  IH  DR
Sbjct: 23  LDRLAHLLSQAPVTIYTCKPNGVFGITFLSDNIKDLFGYKAEEFLHNPDFWINNIHPEDR 82

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D   + +++    +   L  ++R +  ++ + W+  R R +++ +G  +  IG   D++E
Sbjct: 83  DLVISGMNAIHAGK--SLLRKYRFKMKNSHWKWIRDRARLVTDQSGKPIEIIGAWTDMSE 140

Query: 522 -------QKKSLEGILCN 532
                   ++S E     
Sbjct: 141 LIQIEDALRQSEEKHRFL 158


>gi|332535743|ref|ZP_08411489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034851|gb|EGI71383.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 967

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 152/654 (23%), Positives = 285/654 (43%), Gaps = 11/654 (1%)

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
           +    + + Y   +     +   + VL     ++  +   G     T+    +  +   +
Sbjct: 317 LKFFGLFILYAILVALLLHQALYQLVLRRLHTLVYAVTSFGKGQLTTEFPPENKDEIGTL 376

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            G    + +    +I  +       +       R S AV  SG  V   D         P
Sbjct: 377 NGSFRDMTVEIRKLIDGLNQRITEKEIAEKAANRLSKAVAFSGTGVVITDENFVIEYVNP 436

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +  + G      +      L  I          I        R   + +  +   + + 
Sbjct: 437 KMLEMTGYPESHFNRAP--LLNIIASEMSILVEDI--DIDLRSRNYWRGDTLIAGLNKEP 492

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W+ + + P+    G+I  Y+  A DI+  K+S   +   A+ D LTG+ NR  F  +L 
Sbjct: 493 IWVSLSVSPIREEGGEITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLR 552

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             + L+    +    +   D+D++K+IND LG   GD +L+ +  R+ + L+  D +ARL
Sbjct: 553 KSMALAER-GHYAFALFYFDLDEFKRINDTLGHDAGDQLLIEVANRLKKRLRAEDTIARL 611

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L    +    AD A  ++K++ +PI L   E+ V+ASIG        +   +
Sbjct: 612 GGDEFAVLLSGIESQSHAADVANTIQKTLNVPIKLGSNEVIVSASIGITMAPYDSLEEDQ 671

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730
           +LK+A+LAMY AK +G N    +      +    +  + +L + ++  +  + Y P +  
Sbjct: 672 LLKHADLAMYEAKAKGRNTFHFYSQELNAAANERLFIENELRIGLKEKQFVVYYQPQVDS 731

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              ++VG EAL++W HP  G I   +F+ IAE   +I  +  ++L+      +    Q  
Sbjct: 732 RTHQVVGYEALLRWFHPTEGAIPPDKFIPIAEATGLIVELGEWVLQESCDFAVRLAKQGL 791

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I IN++++   D+ L   +  +I K+  S  R+ L  +ES++MGN E +   L  
Sbjct: 792 ENN--ISINLSARQFKDSSLVTTLSKMIIKSGVSAKRLHLELTESMLMGNVEAAITQLHE 849

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+ +GIS+++DDFGT  S LSYL   P D +K + S +         + I  +II MA+ 
Sbjct: 850 LKALGISISIDDFGTGYSSLSYLKRFPVDILKIDRSFVKDIPEDTNDMEITAAIIAMAQK 909

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           ++  ++A+ +     ++ L    C  +Q  + + P+  + +  L +    L  +
Sbjct: 910 LKLDVVAEGVETIEQMQFLQNNNCFIVQGYYFSKPIAEHELPNLYERLNELANS 963


>gi|104779485|ref|YP_605983.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95108472|emb|CAK13166.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 643

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 146/625 (23%), Positives = 280/625 (44%), Gaps = 19/625 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDII----QPALVGGLVLIVILIGFTVIQHVLAT 393
            +     +L  +W     + +    ++ +     +   V   VL+  L+ F     +L  
Sbjct: 22  RMAGLYVVLSILWLALSELVLHGMTEDPLALTVGRQINVVVWVLLSALLIFVSRARLLNF 81

Query: 394 GYFSQGIFS-DGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
                 + S D ER  +A      + + V   D     V        I G     + G  
Sbjct: 82  IGIGARLRSEDRERLRMAAAVFDSTLEGVLVTDRNGLIVHVNRAFMRITGYQQDEVVGQR 141

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              +    H  D   ++ I  +     +G    E   R    + +     I  + + +G+
Sbjct: 142 PSKFKSGRH--DAPFYQQIYAALAD--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDSGE 197

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  Y+ + +DI+  K + E +   A  D LTG+PNR  F DR+   L  +  +      +
Sbjct: 198 LSHYVAVFSDISAIKHTEEELAYLAHHDPLTGLPNRLLFNDRVEQALAAAQANKRG-CAL 256

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D ++ IND LG  +GD +L  +  R+ E+L     LARL G+ FG++  +     
Sbjct: 257 LLLDLDHFQSINDGLGHTIGDQLLKLVGERLREVLGNGVTLARLGGDEFGVLAENCQQVG 316

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +    A  + + +  P       + ++ASIG + + S  +++ ++L+NA+ A++ AK  G
Sbjct: 317 QAGKLAQTIIEQLKEPFGFEGNRLFISASIGISLFPSDALSAEQLLRNADSALFKAKGNG 376

Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 +        +  ++   +L  A+E  EL + + P+  L    ++G+E L++W H
Sbjct: 377 RACYALYTEELTAHAQQRVETAGELRRALEQQELRVFFQPVHDLFTSRMIGVETLVRWQH 436

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +   EF+ IAE   +I  I+ ++L +  R ++ W+ +  +   F+ +NI+S+   
Sbjct: 437 PTRGLVPPGEFIPIAERTGLIAEIDAWVLGQACRQMVQWQAEGRVLE-FVAVNISSRLFN 495

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             EL   +  ++  T  +P+ ++L  +ES VM +PE +   + RLR++G++L +DDFGT 
Sbjct: 496 QRELYRQVADVLHDTGLNPALLELEVTESAVMEDPEVALEQMHRLRELGLNLAIDDFGTG 555

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L  L  +P   +K +   + G    +  IAI+R II +A+++   + A+ I      
Sbjct: 556 YSSLLRLKRLPVQKLKIDQGFVAGLPHDDDDIAIVRVIIALARSMGMQVHAEGIEQAEQA 615

Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949
           + L    C   Q      P+    +
Sbjct: 616 RFLLEQQCQMGQGYWFGRPVPAGEL 640


>gi|107099266|ref|ZP_01363184.1| hypothetical protein PaerPA_01000278 [Pseudomonas aeruginosa PACS2]
          Length = 760

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 142/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           Q +  D  RQ+ AV   + + V   D     V   P    I G  S  + G     L   
Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D+  ++ +  +           E   R    + +   + IR + N  G +  Y+G+ 
Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++  K+S   +   A  D+LTG+PNR    +R+   L+    D  +   +++ID+D +
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ ++ +   +A  +  
Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + I ++AS+G + +         ++++A+ A++ AK  G N    + 
Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     V ++  L  A+++ EL + Y P+  L    IVG+E+L++W HP+ G +  
Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I A++ ++L+R  R +  W+ +      F+ +N++S+      L E +
Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +DDFGT  S L  L 
Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G        AI R+I+ +A+++   ++A+ I  +     L   GC
Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731

Query: 933 DYIQDSHVASPLGFNSIL 950
           D+ Q      P    ++ 
Sbjct: 732 DFGQGYWYGRPQPAEALR 749



 Score =  140 bits (354), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +  AW  +    +   +    +L   +    L        +L+   +++           
Sbjct: 17  IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R + A+    D +WDWD+V DR+  +P  A ++GLA   +  PI  W   +H  
Sbjct: 76  LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +         + +      L + +R+R  D  + W+  R R + ++ G  L Y G+A DI
Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195

Query: 520 TEQKKSLEGILCNA 533
           T Q+   + +   A
Sbjct: 196 TLQRLKEDHLRQAA 209


>gi|251788399|ref|YP_003003120.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Dickeya zeae Ech1591]
 gi|247537020|gb|ACT05641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dickeya zeae Ech1591]
          Length = 689

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 253/562 (45%), Gaps = 13/562 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLP 454
                 E+  +A      + + +   +  R  ++  P    + G ++  + G     +  
Sbjct: 122 ERQKAREQMKIAAAVYESTQEAIIVINTSRSIISINPAFTRLTGYSAADVVGQPSYIFRS 181

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   F T +   V    G    E   R  D   +   I I  + ++ G  + Y+G
Sbjct: 182 DRHDAD---FYTAMWRTVDED-GVWVGEMWDRKKDGSDYLKEITINVIKDAAGTPINYVG 237

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +DIT++KK    I   A  D +T +PNR  F D+L   ++ +         +M+ID+D
Sbjct: 238 VFSDITQRKKQEALIWRQANYDAVTTLPNRHHFQDKLERAVEHAKQSGR-PMALMLIDLD 296

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND LG   GD +L++++ R+ + ++  D +ARL G+ F IIL   + +      A
Sbjct: 297 HFKSVNDSLGHRAGDALLLAVSNRLTDCVQGADTIARLGGDEFAIILTDLHQNGDSGCLA 356

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +A P N+    + V+ASIG A + +   T  E+ KNA+ AMY AK  G N    
Sbjct: 357 RTLLAQLAQPFNIDGESMLVSASIGIALFPNDSDTLEELFKNADQAMYAAKSAGRNCFNY 416

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +          R+ +  DL  A++  +  + Y PII L   ++V  EAL++W HP  G I
Sbjct: 417 YTPALHQAARARLRLTNDLRTAIQCGQFEVYYQPIIELSTNKVVKAEALVRWRHPIRGMI 476

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ +AE+  +I  +  ++  +    +  WR     P   + IN +   L   +  E
Sbjct: 477 SPAEFIPLAEDTGLIVPLGDWVARQAITQLAQWRKIF-DPHFQVAINQSPVQLRSKDFTE 535

Query: 813 -GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
                 +++     + + +  +E +++    R    L   R  GI + +DDFGT  S L+
Sbjct: 536 MTWVQELAQHGLEGNAVIIEITEGLLLNAESRVNDNLHLFRDTGIQIAIDDFGTGYSSLA 595

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           YL     D +K + S +         +  +II MA ++   ++A+ +  +     L R+G
Sbjct: 596 YLRKFDIDCLKIDRSFVEDLDGVGFELCVAIIAMAHSLGLKVVAEGVETQQQCDTLARIG 655

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           CDY Q    + P+    +  LL
Sbjct: 656 CDYAQGFLFSRPVPAPELTILL 677



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 4/135 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             ++        +      +   +     VT  P    I G     M G  R++      
Sbjct: 4   SAWNSESLFQAILDRCPVGIAVINYDGHYVTVNPAYGAIYGYTQEEMAG--RSFTMVFPE 61

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           + RD+       F+    G L  E+ V   D     +     P +       R + +  D
Sbjct: 62  SARDSVLARHRQFLDE-GGTLGGEWTVMRRDGVILTIWSESVPFAQHGHRADRLVYVL-D 119

Query: 519 ITEQKKSLEGILCNA 533
           ITE++K+ E +   A
Sbjct: 120 ITERQKAREQMKIAA 134


>gi|153833810|ref|ZP_01986477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio
           harveyi HY01]
 gi|148869868|gb|EDL68836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Vibrio
           harveyi HY01]
          Length = 815

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 148/554 (26%), Positives = 269/554 (48%), Gaps = 13/554 (2%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +        I G A+  + G   N L   H +DR+
Sbjct: 267 QLSLASKIFDNSHEGMVITDRKANILDVNSAFTHITGYAAEEVIGKNPNILRSGH-HDRE 325

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++ +        +G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 326 FYQQLWRQL--ESKGQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   ++      +     + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHA-FATLFLDIDHFKHINDS 442

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F IIL +  +  ++ D    +     
Sbjct: 443 MGHFCGDQLLTKLAERLQDVLHLRAHVARIGGDEFVIILPNIESDSQLIDTIEDILCLFN 502

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P  + + E + ++ S+G A +      S  +LKNA+ AMY AK  G N    +      
Sbjct: 503 RPFEVSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V ++  L  A+E ++L+L Y P   L   E+VG+EAL++W HP  G IS ++F+ 
Sbjct: 563 KSVSHVRMQSALHEAIEKNQLHLAYQPQYNLSANELVGVEALLRWQHPDLGMISPADFIP 622

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++LE+      +W D        + +N+++  L  ++    + A++ 
Sbjct: 623 IAEKTGLIQSIGKWVLEQACLQGRAWLDNGIEFG-KLAVNVSALQLQQSDFISKLGAILK 681

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R++L  +ES ++ +P+++   L  LR++GI ++LDDFGT  S LSYL  +P +
Sbjct: 682 ETEFPAHRLELEITESFLLIDPQQAIASLNLLREMGIEISLDDFGTGYSSLSYLKGLPIN 741

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   S     AI+ +II M + +   ++A+ I  +   + L   GC Y Q 
Sbjct: 742 KLKIDRSFVSDVPSNTDSNAIVNAIIAMGQTLSLKVVAEGIETDEQAQYLFERGCIYGQG 801

Query: 938 SHVASPLGFNSILK 951
              ++P+    + K
Sbjct: 802 FRFSAPVRAEKLFK 815



 Score = 41.9 bits (97), Expect = 0.57,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 50/194 (25%), Gaps = 7/194 (3%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
             P W+            +     N +I   L      +   +  T  +           
Sbjct: 85  YCPVWLP-SGELFAALALVHPTEQNTVISGWLSALAGRVGFDVAQTYHKEQKRHDVQLPE 143

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +     +    D  W          T   +     +    + G            
Sbjct: 144 LLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEDSWQMTGSEIVGKND--FELFSSR 198

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               F       +         E  +   +N   W+     P+ N  G+++  +G+  ++
Sbjct: 199 RAKKFIDTDQLVIATGSQNTVEECTLIDDNNNPTWLETIKSPIRNQTGELIGILGMTRNV 258

Query: 520 TEQKKSLEGILCNA 533
           T ++K +E  L  A
Sbjct: 259 T-RRKMVETQLSLA 271


>gi|295798109|emb|CAX68931.1| Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(S) precursor [uncultured bacterium]
          Length = 944

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 134/581 (23%), Positives = 269/581 (46%), Gaps = 9/581 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++Q +              ++       S D +   ++  + +   P    ++G +  
Sbjct: 369 VALVQDITDQVRIEHERIRSEQKYKGLYNSSRDGILFLNMNGNIIDANPAFLEMIGYSRE 428

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G  +              R I+ + +        YE   R  D     + +R   +S
Sbjct: 429 EVIGVNQ--FHITPPQWHSLERDIIKNQISMTGYSPIYEKEFRRKDGSATPVTVR-MWIS 485

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G         +DI+E+KK+ E +   ++ D LT +PNR  F+DRL   + ++A    
Sbjct: 486 KESGLTAGMWCTVHDISERKKTQEQLTHLSYYDVLTDLPNRMLFVDRLQQAI-IAARYAG 544

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ I +D +K++ND LG  VGD +L  + +R+   L+    + R++G+ F ++L +
Sbjct: 545 TAVAILFIGLDHFKRVNDTLGRTVGDHLLQEVAKRLKTCLEEMQTVTRVAGDEFAVLLPN 604

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +    +    +  +   P  + + E+ ++  IG + + +       +L+NA  AM  
Sbjct: 605 VEKADDAINICNQIFFAFKEPFKIDDHELFLSCCIGISLFPTDGKEPEILLRNANAAMDR 664

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    +  +          ++  L  AV+ +EL LVY P I L   +I+G+EAL
Sbjct: 665 AKGFGRNQYRLYSATMHEKTHERFILENSLRHAVDRNELCLVYQPQINLSTGDIMGVEAL 724

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G I+ +EF+ +AEE  +I +I+ +++         W +     PI + +N+ 
Sbjct: 725 VRWKHPELGLITPTEFLPLAEETGLIVSIDDWVMREACLQAKKWLEM-GFSPIRMAVNLT 783

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++     ++ + ++ ++ +T  SP  +++  +E V+M N E +   L +L  +G+ +++D
Sbjct: 784 ARQFQYTDVVDSVKKILRETSLSPYNLEIELTEHVIMQNVEETVQCLKQLSDMGVKISID 843

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P  ++K + + +          AI+++II +A +++  ++A+++ 
Sbjct: 844 DFGTGYSSLSYLKRFPIHSLKIDEAFVRDITTDPDDAAIVKAIISLAHHLKLEVVAENVE 903

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            E     L    CD +Q    + P+  N    LL  +  LV
Sbjct: 904 TEPQRMFLKTEQCDRMQGFLYSRPVAPNVFTDLLTTQNKLV 944



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 42/143 (29%), Gaps = 2/143 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++ +       + +    +R       S   +     ++  +     +  +LG +   + 
Sbjct: 245 MEVITEKKKALEALAESEKRFRTYFNLSLLGIAIISPLKGWLEVNDKLCELLGYSRDEL- 303

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W+   +  D        D     +        R    +         IR +  S+
Sbjct: 304 -KSMTWVELTYPEDLVQDLKHFDLLFSGKVDSYSLSKRFIRKNGDMMHASTNIRCVRKSD 362

Query: 507 GDILRYIGIANDITEQKKSLEGI 529
           G +  ++ +  DIT+Q +     
Sbjct: 363 GSVDYFVALVQDITDQVRIEHER 385



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +I +V+    F + +    E+  L +  +   +   D   + +  +        L 
Sbjct: 115 VLSRLISYVIQRNKFEEAVKKGEEQLKLFIEHAPAAIAMLDRNLNYLVISRRWVEDFKLQ 174

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           S ++ G        +     D ++ +L+  +  +  R + +F    AD    W+   +RP
Sbjct: 175 SQNIIGKNHYD---VFPEIPDRWKEVLNCALEGQVQRSEEDF-FIRADQTIQWVRWEVRP 230

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
                  I   +     ITE+KK+LE
Sbjct: 231 WYERRDVIGGVVIFMEVITEKKKALE 256


>gi|254237481|ref|ZP_04930804.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169412|gb|EAZ54923.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 760

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 142/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           Q +  D  RQ+ AV   + + V   D     V   P    I G  S  + G     L   
Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D+  ++ +  +           E   R    + +   + IR + N  G +  Y+G+ 
Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++  K+S   +   A  D+LTG+PNR    +R+   L+    D  +   +++ID+D +
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ ++ +   +A  +  
Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + I ++AS+G + +         ++++A+ A++ AK  G N    + 
Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     V ++  L  A+++ EL + Y P+  L    IVG+E+L++W HP+ G +  
Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I A++ ++L+R  R +  W+ +      F+ +N++S+      L E +
Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +DDFGT  S L  L 
Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G        AI R+I+ +A+++   ++A+ I  +     L   GC
Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731

Query: 933 DYIQDSHVASPLGFNSIL 950
           D+ Q      P    ++ 
Sbjct: 732 DFGQGYWYGRPQPAEALR 749



 Score =  140 bits (354), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +  AW  +    +   +    +L   +    L        +L+   +++           
Sbjct: 17  IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R + A+    D +WDWD+V DR+  +P  A ++GLA   +  PI  W   +H  
Sbjct: 76  LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +         + +      L + +R+R  D  + W+  R R + ++ G  L Y G+A DI
Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195

Query: 520 TEQKKSLEGILCNA 533
           T Q+   + +   A
Sbjct: 196 TLQRLKEDHLRQAA 209


>gi|171060138|ref|YP_001792487.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Leptothrix
           cholodnii SP-6]
 gi|170777583|gb|ACB35722.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 704

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/586 (24%), Positives = 275/586 (46%), Gaps = 13/586 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++   V   +      ++ +  +  R   AV G+   VWDWD+    VT +     +LG 
Sbjct: 112 VVHARVANVLRLYRDNAENLQRNEARWIFAVEGAEQGVWDWDLREHSVTLSQQWRILLGD 171

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             G+    +  W   +H +D    +  LD          + E R+R  D  + W++   R
Sbjct: 172 DEGAGDTSVDAWRARVHPDDAAAVQRRLDRHRRGISSGYESEHRMRCGDGSYVWVLEGGR 231

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            +  +  G  +R IG  +DI+ +K++       AF D +T +PNR+  ++ L   L +  
Sbjct: 232 VVQHDEAGRPMRMIGTLSDISRRKEAEAQAFSLAFYDPVTELPNRRRLVELLRFSL-VGD 290

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  T+ ++D+D +K +ND  G  VGD +L  +  R+   ++  DI+ARL G+ F +
Sbjct: 291 QLGQGSATLCLVDLDHFKLVNDAHGHDVGDQLLRQVAVRLKACVRQQDIVARLGGDEFAV 350

Query: 620 ILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEM 673
           +L+ E       +         +   +A P  + +     +AS+G  +  +     + ++
Sbjct: 351 LLMHERRSAVSPAAAAEAAGAKLLAVLAEPYAIGDHLHHCSASMGVVAVDADKAEQAEQL 410

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731
           LK A++A+Y AK  G   +  F  +   +      ++ +L  A+   +  LVY   +   
Sbjct: 411 LKWADIALYEAKRAGRGCLRFFDPAMQAAVEARSALEAELRTALACRQFQLVYQLQVGDR 470

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              + G EAL++W HP+ G I  +EF+ +AEE  +I  +   +LE++   + +W   A++
Sbjct: 471 SAAL-GAEALVRWHHPQRGVIGPTEFIALAEETGLIVPLGRVLLEQVCEQLCAWERDADL 529

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +NI++++L + +  + + A +++T     R+KL  +ES ++G+ +     + RL
Sbjct: 530 DDLTVALNISARELHEPDFVDFVLATLARTGAPVRRLKLELTESALVGDVDDIAARMHRL 589

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
           R  G+  +LDDFGT  S LSYL  +PFD +K + S +    E      + R+I+ +A ++
Sbjct: 590 RDHGVGFSLDDFGTGFSSLSYLKRLPFDQLKIDRSFVRDILEDTVDARLSRAIVALAASL 649

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +++A+ +        L   GC   Q      P+       +L+ 
Sbjct: 650 GLSVVAEGVELAAQGDMLREFGCRQFQGFLYGVPMPAAEFSSVLRA 695


>gi|253699121|ref|YP_003020310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
 gi|251773971|gb|ACT16552.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
          Length = 853

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 145/579 (25%), Positives = 266/579 (45%), Gaps = 17/579 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASG 443
           I+ +       Q + S  E+    V    + V+           V  +P    I G    
Sbjct: 265 IRDISIRKNAEQALLSSEEQCRTIVSNINEYVYSVRFEEGDITSVYHSPKCFDITGYTPE 324

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             +     W   IH  DR+     L+              R+   D    W++       
Sbjct: 325 EYYRDPLLWFTMIHEEDRNLVVEFLNGIFAG-LDHEPIRHRIIHKDGSVRWIVNNCAVQR 383

Query: 504 NSNGD---ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              GD   I R  G   D+T+ K++ E I   A  D LT +PNR +  +R+  ++  +  
Sbjct: 384 QRRGDRLSITRLDGFILDVTDIKRAEENIFFLAHHDPLTKLPNRSTLYERMEQVICAAQK 443

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ +DID +K+IND +G  VGD +L S+ +R+ +  +  D+++RL G+ F ++
Sbjct: 444 SSR-NVALLFLDIDGFKQINDSMGHDVGDRLLQSVAKRLSDCTRSCDVVSRLGGDEFVVM 502

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L     +           K I     +L   +TVT SIG + +         +LK+A++A
Sbjct: 503 LWDCGEAETTVVA----EKVINAGFPVLGSNVTVTPSIGISIFPDDGRDYLTLLKHADIA 558

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MYHAK  GGN+ + F    +    +R M++ +L  A++  E  L Y P + L   +  G+
Sbjct: 559 MYHAKKSGGNNFQFFTHKLNEIAHERFMLEAELRRALDREEFVLYYQPKVDLSTGKFSGM 618

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP  G +    F+ IAEE  ++  I+ +++  + R I  W+ Q     +   +
Sbjct: 619 EALIRWQHPAHGLMLPESFIGIAEESGLLTQISKWIIPTVCRQIQQWQQQGIN-SVSAAV 677

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++      +  E ++  + +T  +P  ++L  +E+ +M +P+R    +  ++ +G+ L
Sbjct: 678 NLSASFFQHPDFEETIEESLLQTGIAPECLELELTEATIMSDPQRVLGSMAAMKALGLQL 737

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LSYL  +P D +K + S +          A++R++I + ++++  +IA+
Sbjct: 738 SIDDFGTGYSSLSYLKKLPVDKLKIDQSFIHNIARDADNAAVVRAVISIGRSMQLRVIAE 797

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     +  L   G +  Q  + + PL    +  LLK+
Sbjct: 798 GVENASQLAWLQAEGSEEAQGYYFSRPLPVAKMTSLLKQ 836



 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/133 (7%), Positives = 39/133 (29%), Gaps = 12/133 (9%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPI---RNWLP 454
            +     R       + D +   +     +    P +  +LG     + G      ++  
Sbjct: 152 ALQRSEARYRRLFETAKDGIMIVEADSGAIAEVNPFLVDMLGCRRDELLGKTVWELHFFA 211

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           ++     D         +  +      + ++     +   + +      +    ++++  
Sbjct: 212 HVVPGAADF------KAMQQKEFFHGDDLQLATVRGRDIPVEVVSNCYQSEQSSVVQF-- 263

Query: 515 IANDITEQKKSLE 527
              DI+ +K + +
Sbjct: 264 NIRDISIRKNAEQ 276


>gi|330963830|gb|EGH64090.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 825

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 149/581 (25%), Positives = 273/581 (46%), Gaps = 12/581 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++ G   +  +      SQ +       +     + + V   D  +           I 
Sbjct: 234 LLISGDACLLTISRDITESQLMQEKLHLAATVFESTAEGVLITDTDQRISAVNRAFTEIT 293

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G +     G   R      H  D   + ++         G  Q E   R  + + +   +
Sbjct: 294 GYSESEAIGQTPRLLASGQH--DSAFYASMWHQLTAE--GHWQGEISNRRKNGELYPSWL 349

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + N    +  ++ +  DI+  K +   +   A  D LTG+PNR  F  RL + L  
Sbjct: 350 TVSAVRNKENLLTHFVAVFADISSLKHAQARLDYRAHHDPLTGLPNRTLFESRLQSALLH 409

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +L   V+ +D+D++K IND LG  + D +L  +  R+ E L+  D +ARL G+ F
Sbjct: 410 SEESGSL-GAVLFLDLDRFKHINDSLGHPIRDLLLKGIAHRLKETLRDIDTVARLGGDEF 468

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L            A  +    + P    E ++ ++ SIG   + +     + ++KNA
Sbjct: 469 IVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHDLYISPSIGSCVFPTDGTDVATLVKNA 528

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY +K +G N VES+        S+R+ ++++   A++ ++L L Y P I ++   +
Sbjct: 529 DAAMYRSKAQGRNRVESYTRDLTEQASERIALEQERRRALDRNQLSLAYQPKISILTHTL 588

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EALI+W HP +G +    F+ +AEE  MI  I  ++LE+  R + +WR     P   
Sbjct: 589 VGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGEWVLEQACRQMGAWRK-TCKPFGP 647

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A   L    L E ++ L++     P  ++L  +E+ +M   + +  +L +L+++G
Sbjct: 648 MSVNLAGAQLRQPNLVERIEQLLTDNGLMPDCLQLEITENFIMSQTQDALAVLHKLKQLG 707

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S LSYL  +P D +K + S + G  E     AI+R+II + ++++ T+
Sbjct: 708 VQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAIIALGRSMQLTV 767

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
           IA+ +      + L+  GC+ IQ   ++ PL  +    + L
Sbjct: 768 IAEGVETREQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 808



 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + +     R +       D +     I    +          GL+   + G     L  
Sbjct: 7   REALRLSEGRFASVFAQCPDAMIIASLIDGHIMDANQAFVEHTGLSIEEVIGKTPTELDL 66

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + Q    ++  +P     G     + 
Sbjct: 67  WAVPGIGPKVLKQL-----QTGNIHNLEIPFRRKNGQTFSGLMSAQPF--EQGSTPAVLV 119

Query: 515 IANDITEQKKSL------EGILCNAFQ 535
           I  DIT  K +       E     AF 
Sbjct: 120 IVRDITRLKLAQQQLQLSEEKFAKAFH 146



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 6/152 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   + D +          +        I G + 
Sbjct: 118 LVIVRDITRLKLAQQQLQLSEEKFAKAFHAAPDGLAITRQQDGMLLEVNEGFCRITGYS- 176

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +H             D    R+ L   +        +  R+   +       +   P+
Sbjct: 177 -ELHCLEHYTFDLGIWADLSE-RSKLTEQLEQHGVVHGFRARLCNVNGSIRVCELSSHPL 234

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             S    L  + I+ DITE +   E +   A 
Sbjct: 235 LISGDACL--LTISRDITESQLMQEKLHLAAT 264


>gi|34496488|ref|NP_900703.1| hypothetical protein CV_1033 [Chromobacterium violaceum ATCC 12472]
 gi|34102342|gb|AAQ58708.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 936

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 153/586 (26%), Positives = 271/586 (46%), Gaps = 14/586 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDI 434
           + +   F  I  V           +  ER  LA      + + +   D  R   +     
Sbjct: 350 VAMRDAFGRINAVWRMVRDISEKRAAEERVQLAAKVFENTVEGIMITDADRRIRSVNRAF 409

Query: 435 ATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
             I G     + G   + L    H  D   +  +  S   +  G  Q E   R  + + +
Sbjct: 410 TEITGYTQHEVLGQKTSILSSGRH--DEPFYEQMWQSIAEH--GSWQGELWNRRKNGEVY 465

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              + I  + NS G+I  Y+ I +D+TE+K + E I   A  D LT +PNR    DR+  
Sbjct: 466 PEWLAINAVRNSLGEITHYVAIFSDLTERKAADERIQFLAHFDVLTSLPNRIHMQDRVEL 525

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +  +  D+      +++D+D++K +N+ LG + GD +L     RI  ++   ++LAR  
Sbjct: 526 AIHNAVRDNQRLAL-LLLDLDRFKTVNESLGHSAGDTLLQVAADRIKSVMAPGEMLARQG 584

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I+L   ++  + A  A  +R   A PI L    +T+T SIG + +         +
Sbjct: 585 GDEFIILLPVISDPGEAALAAERVRDVFANPIELHNHVLTITPSIGISVYPDDGRDYETL 644

Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           ++NA+ AMYHAK  G N  + +    ++   + + I+  L  A+E  E  L Y P + + 
Sbjct: 645 VRNADAAMYHAKSSGRNSYKFYTADLNARAREILAIESQLRFALERDEFVLHYQPQVEME 704

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              IVG EALI+W+HP  G +    F+ +AEE   I  I  +++    R ++ WR     
Sbjct: 705 SGRIVGAEALIRWNHPSLGLLGPVRFIQVAEERGFIVQIGNWVIAEATRQLVEWRRAGL- 763

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P + + IN+++      +L   ++  +  +      + +  +ES++M + + +   +  +
Sbjct: 764 PELTLAINLSALQFRQPDLALQVKQALESSGLPGHALDIEVTESIIMEDAQATIQTIDNM 823

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           + +G+ L++DDFGT  S LSYL     D +K + S +          AI R+II MAKN+
Sbjct: 824 KNMGLRLSIDDFGTGYSSLSYLKRFKADKLKIDRSFVRDIPQDADDSAIARAIINMAKNL 883

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              ++A+ +      + L + GCD++Q   +A PL  +   +LL +
Sbjct: 884 NMQVVAEGVETMEQWQFLEQEGCDFVQGYLIAKPLPADDFAELLHK 929



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 49/159 (30%), Gaps = 2/159 (1%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LV  +      +   +         +     +       + D +    +    +   P  
Sbjct: 227 LVDELRAKTLALEADIARRREVEDALRRSENKYRELFWSNLDGIVISSLDGQVIDANPAF 286

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             ++  +   +    +N+   +        R  LD+ V       ++E       +    
Sbjct: 287 LNLMCYSLDQL--KQQNFWSLVAEESEALERFNLDNKVLRFGYCDEFEATYLNRFDNQVP 344

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           + ++   M ++ G I     +  DI+E++ + E +   A
Sbjct: 345 VSVKTVAMRDAFGRINAVWRMVRDISEKRAAEERVQLAA 383


>gi|242278997|ref|YP_002991126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio salexigens DSM 2638]
 gi|242121891|gb|ACS79587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio salexigens DSM 2638]
          Length = 938

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 141/587 (24%), Positives = 267/587 (45%), Gaps = 13/587 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRV-TTTPDIATILG 439
           + F  +  V       + + +  E        + D  W+ W      V   +P    I G
Sbjct: 357 LTFAFVTDVSGYKMMEKALRASEEEYRTIAEYTFD--WEMWIGPTGAVKYVSPSCERISG 414

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                           +H NDR+ ++  L        G    + R+   D    W+ +  
Sbjct: 415 YPKAYFMEGPVRVEHILHKNDREFWQKALRGTFPSADGT---DMRLFRRDGLLRWVSLTG 471

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +   +G  L       DIT++K   + +   A  D LTG+ NR    DR+   ++ S 
Sbjct: 472 HQVFADDGTSLGLRISLRDITKRKFMEKQLQYEALHDPLTGLANRTLCCDRILQAVERSR 531

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             DN    V+ +D+D++K IND LG  +GD +LV +++R+ + ++  D ++R  G+ F +
Sbjct: 532 RRDNYYFAVVFMDLDRFKIINDSLGHNIGDKLLVEVSKRLLQTIRELDTVSRFGGDEFIV 591

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L    +  +       +R  +  PI +   +I + AS G     +      E+++NA +
Sbjct: 592 VLEELASPREGIRIVRRIRDCLNDPIMIEGHKINIAASYGVLLSPTEYDKPEEIIQNANV 651

Query: 680 AMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIV 736
           AM+ AK  G + ++ F           + ++ DL  A+ +  ELYL Y PI  L  + +V
Sbjct: 652 AMHQAKESGRDRIKVFNKRMLEEAVQAMQLESDLRAAMLSGDELYLDYQPIYSLQSQSVV 711

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IF 795
           G EALI+W+HP+ G +   EF+ +AEE  +I  +  +++    R + SW+   +    + 
Sbjct: 712 GFEALIRWEHPRRGLVMPGEFIPMAEESGLIFELGSWVVSEACRQMKSWQVNYDSASEMM 771

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+ +      L + + + +S+       +K+  +E+ +M   ++S  +L RL+  G
Sbjct: 772 MSINISPRQFSQPALVDNILSKLSEFDLPARNLKIEITETAIMERAKQSVDMLNRLKSAG 831

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913
           + +++DDFGT  S +S L   P D +K + S +    E  + + I+R+I+ +A N+   +
Sbjct: 832 VLVSIDDFGTGYSSMSNLQEFPLDQLKIDLSFVRKMNESTENLEIVRAIVNLAHNLGLNV 891

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           +A+ +        L  +GC++ Q    + P+  + +    K    L 
Sbjct: 892 VAEGVEEIEQQDALRDLGCEFGQGYLFSKPISRSKVEAFFKNEIKLS 938



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 21/156 (13%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L     ++ +    +R    V  + +  +  D     +   P   T++GL    + G 
Sbjct: 245 EILMREKAARSLVKSEKRYRALVETTAEGFFMIDESSILLDVNPAFCTMIGLTREEVLG- 303

Query: 449 IRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                      D       T  + F        ++E     ++ +   + I    +  S+
Sbjct: 304 ----------GDIGAILGDTAAERFRNNEGHSHKFELSFVNSNGREVDIFINATNLFESD 353

Query: 507 GDILRYIGIANDIT-------EQKKSLEGILCNAFQ 535
            ++        D++         + S E     A  
Sbjct: 354 -NVKLTFAFVTDVSGYKMMEKALRASEEEYRTIAEY 388


>gi|83648653|ref|YP_437088.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636696|gb|ABC32663.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 157/579 (27%), Positives = 272/579 (46%), Gaps = 14/579 (2%)

Query: 391  LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHG 447
            L T +  +        ++ AV  + + +   +  R     V   P    I G +S  + G
Sbjct: 543  LRTRHAREKAEESLRLRNRAVESTPNGILILNARRPDLPLVYVNPAFERITGYSSDEVLG 602

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +L      D D  R  L   +  R        R +  D    W  + I P+ +   
Sbjct: 603  KGPFFLQS--DIDEDRRRESLHFLIRNREEGCVL-LRNQRKDGSPFWNELHIAPVYDDRR 659

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +  ++ + ND+TE +   E +   A  D+LTG+PNR    DRL   L  +A + + +  
Sbjct: 660  MLTHFVAVINDVTESRHYQEQLEYQATHDDLTGLPNRNMMRDRLGQELWRAARNKH-KVA 718

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++ +DID++K IND LG   GD +L  + +R+  + +  D + R  G+ F IIL   +  
Sbjct: 719  IVFLDIDQFKLINDSLGHNAGDAMLKVIAKRLTGMARASDTVVRYGGDEFVIILPDISPP 778

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             K+A F   + + IA  I L  R+I V+ASIG + +         ++KNA++AMY AK  
Sbjct: 779  EKVASFISRLMEVIAQSIQLDHRDIHVSASIGVSIYPQDGDHPEVLIKNADIAMYLAKEE 838

Query: 688  GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G N    F    +    +R+ ++  L  A++  + +L Y P + L    I G+EAL++W 
Sbjct: 839  GRNRFHFFTEDLNKTAMERLDLEVRLRAALDKQQFHLEYQPQVDLRSGVITGVEALLRWR 898

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             P+ G+I   +F+ IAEE  +I AI  ++L        +W D     P+ + IN+++K L
Sbjct: 899  EPELGDIPPGKFIPIAEETGLIGAIGEWVLHAACVQAKAWSDLVAH-PLTMSINLSAKQL 957

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                    + ++++ T      I++  +ES +M N    R  L  L++ G+ L +DDFG 
Sbjct: 958  TMARFDSALHSILTDTAVDCRYIEIELTESAIMRNVNEMRERLNILKEQGLKLAVDDFGV 1017

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S  S+L    FD +K + + +          +I R+++ MA+++   ++A+ I  E  
Sbjct: 1018 GYSSFSHLRSFSFDRLKLDITFVRDITTDPNTASIARTVMSMARSMHMQVVAEGIETEAQ 1077

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            ++ L R+GCD  Q   +  P    SI  LL    P +++
Sbjct: 1078 LRYLQRLGCDVGQGFFLGRPACAQSIEALLAS--PRIRS 1114



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 3/130 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             R    +    +++  W                 G +  ++ G   +        +   
Sbjct: 43  EARFQYILDDIPELICRWKPDGAITYVNAQYCRYFGSSRSALIGK--SIFTLSPPEECSV 100

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +       Q E RV        W++   R + +S G +L +  I  DIT+ +
Sbjct: 101 IHEQMRR-ISQTSPVSQQERRVIDGRGAQRWLLWTDRGIFDSQGRVLEFQSIGRDITDSR 159

Query: 524 KSLEGILCNA 533
           ++ E I   A
Sbjct: 160 ETNEQIGSMA 169



 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 29/139 (20%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +     R    V    D +   D         P    I G     + G           
Sbjct: 272 ALRQSENRLGALVSAEADSILVIDDAGVIRFANPAAERIFGKPKEMLIGQAFGV------ 325

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                        +      +++               +R +P+  ++  I  ++   +D
Sbjct: 326 -----------PCLTGDYAEVEF------PRGGKRIAEMRAQPLPWND--IQAHLITLHD 366

Query: 519 ITEQKK----SLEGILCNA 533
           +T+ +K            A
Sbjct: 367 VTDHRKREHLLQRRNRTLA 385


>gi|218889025|ref|YP_002437889.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa LESB58]
 gi|218769248|emb|CAW25008.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa LESB58]
          Length = 760

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 142/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           Q +  D  RQ+ AV   + + V   D     V   P    I G  S  + G     L   
Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D+  ++ +  +           E   R    + +   + IR + N  G +  Y+G+ 
Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++  K+S   +   A  D+LTG+PNR    +R+   L+    D  +   +++ID+D +
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ ++ +   +A  +  
Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + I ++AS+G + +         ++++A+ A++ AK  G N    + 
Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     V ++  L  A+++ EL + Y P+  L    IVG+E+L++W HP+ G +  
Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I A++ ++L+R  R +  W+ +      F+ +N++S+      L E +
Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +DDFGT  S L  L 
Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G        AI R+I+ +A+++   ++A+ I  +     L   GC
Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731

Query: 933 DYIQDSHVASPLGFNSIL 950
           D+ Q      P    ++ 
Sbjct: 732 DFGQGYWYGRPQPAEALR 749



 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +  AW  +    +   +    +L   +    L        +L+   +++           
Sbjct: 17  IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R + A+    D +WDWD+V DR+  +P  A ++GLA   +  PI  W   +H  
Sbjct: 76  LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +         + +      L + +R+R  D  + W+  R R + ++ G  L Y G+A DI
Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195

Query: 520 TEQKKSLEGILCNA 533
           T Q+   + +   A
Sbjct: 196 TLQRLKEDHLRQAA 209


>gi|189425831|ref|YP_001953008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422090|gb|ACD96488.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 933

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 152/659 (23%), Positives = 271/659 (41%), Gaps = 16/659 (2%)

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
                   AR       L      +   +      ++ +    L  +      +    R 
Sbjct: 277 DAYAPVRTARTWFIIATLLGMAVAVLLVL-----FMMRLLTRPLAQLASHVAELPEK-RG 330

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
               I   + G +  +           V      +Q + +  +R  +    + D  +   
Sbjct: 331 AERFIHLPVNGEIGNLTGAFN----SMVEEIDQSTQALRNSEQRYRIVTEFTNDFTYWRR 386

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQY 481
                   +P    + G +   +          IH  DR+ F  +             + 
Sbjct: 387 PDGSFEFISPACLEVTGYSREELFAQPSLMEEMIHPGDREMFDRMAAESGEEINCNNEEL 446

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E+R+        W+    RP+ + NG  L   G  +DITE K+  + +      D LTG+
Sbjct: 447 EYRIITKGGNTRWVRHTCRPIVDENGVFLGRRGCRSDITEHKQLADQVSHMVLHDLLTGL 506

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F DRL          D+    V+   ID++K IND LG   GD +L+ +  R+ +
Sbjct: 507 PNRSLFADRLFLATAQRERGDHDLTVVLFFGIDRFKLINDTLGHETGDRLLIMVAERLRK 566

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           LL   D L R  G+ F  IL    +  +    +  +  S+A P N   +++T++ SIG A
Sbjct: 567 LLHPNDTLCRFGGDVFAFILPGRESRHEAVTMSYRVLASLADPFNPSGQQVTLSGSIGIA 626

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSE 719
                   +  + KNAE AMY AK  G N    +        ++ + +   +   + N +
Sbjct: 627 ISPQDGTDAETLQKNAETAMYDAKRSGKNSFRFYAREMNAQAAEMLRLDNSMPQGLVNGD 686

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
            YL Y P + L D  +V +EAL++W HP+ G I    F+ +AEE   I  +  ++L    
Sbjct: 687 FYLHYQPQLNLEDNSVVAVEALLRWRHPELGMIPPDRFIPLAEESGFIIKLGEWVLRTAC 746

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               +W+      P+ I +N++     + +  + +   +S +  SP  ++L  +ES+++ 
Sbjct: 747 AQCAAWQQDGPA-PLRIAVNVSGCQFNEPDFVDMVSTALSSSGLSPEYLELELTESLLIS 805

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           N +++   L  L+ +GI L +DDFGT  S L+YL + P D +K + S +          A
Sbjct: 806 NEQQALQKLQLLKSMGIYLAIDDFGTGYSSLAYLKHFPLDRLKIDKSFINDILTDPDDAA 865

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I  +II M  +++  +IA+ +     +  L   GCD +Q  +++ PL  + +   +  R
Sbjct: 866 ITEAIIAMGHSLKLKVIAEGVETREQLLFLEDRGCDEMQGYYLSKPLSEHDLKVFITAR 924


>gi|15595482|ref|NP_248976.1| hypothetical protein PA0285 [Pseudomonas aeruginosa PAO1]
 gi|116054012|ref|YP_788454.1| sensory box GGDEF domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313112106|ref|ZP_07797889.1| putative sensory box/GGDEF domain-containing/EAL domain-containing
           protein [Pseudomonas aeruginosa 39016]
 gi|9946128|gb|AAG03674.1|AE004466_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115589233|gb|ABJ15248.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884391|gb|EFQ42985.1| putative sensory box/GGDEF domain-containing/EAL domain-containing
           protein [Pseudomonas aeruginosa 39016]
          Length = 760

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           Q +  D  RQ+ AV   + + V   D     V   P    I G  S  + G     L   
Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D+  ++ +  +           E   R    + +   + IR + N  G +  Y+G+ 
Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRAVRNDQGQLTHYVGVF 314

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++  K+S   +   A  D+LTG+PNR    +R+   L+    D  +   +++ID+D +
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ ++ +   +A  +  
Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + I ++AS+G + +         ++++A+ A++ AK  G N    + 
Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     V ++  L  A+E+ EL + Y P+  L    IVG+E+L++W HP+ G +  
Sbjct: 493 RVLTARARAHVQVESALRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I A++ ++L+R  R +  W+ +      F+ +N++S+      L E +
Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +DDFGT  S L  L 
Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G        AI R+I+ +A+++   ++A+ I  +     L   GC
Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731

Query: 933 DYIQDSHVASPLGFNSIL 950
           D+ Q      P    ++ 
Sbjct: 732 DFGQGYWYGRPQPAEALR 749



 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +  AW  +    +   +    +L   +    L        +L+   +++           
Sbjct: 17  IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R + A+    D +WDWD+V DR+  +P  A ++GLA   +  PI  W   +H  
Sbjct: 76  LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +         + +      L + +R+R  D  + W+  R R + ++ G  L Y G+A DI
Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195

Query: 520 TEQKKSLEGILCNA 533
           T Q+   + +   A
Sbjct: 196 TLQRLKEDHLRQAA 209


>gi|219854353|ref|YP_002471475.1| hypothetical protein CKR_1010 [Clostridium kluyveri NBRC 12016]
 gi|219568077|dbj|BAH06061.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 567

 Score =  537 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 149/559 (26%), Positives = 284/559 (50%), Gaps = 9/559 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           S+ +    A+ G+   +W+WD+ +  +  + +   ILG  + +           +   D+
Sbjct: 7   SNEQIYKRALTGANISLWEWDLEKCCIFFSDNFKNILGYNTENFKNLFDFIEEIVIPPDK 66

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            + +  L  F+       + EF++   +     ++++     NS G+I+   G  ND+T+
Sbjct: 67  LSAKNDLTFFIKGNTETYRSEFKISTKEKHIRSLLVKGAATRNSAGEIILLSGSINDVTQ 126

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K+  E I  +A+ D+LTG+PNR  F + L TILD           ++ IDID +K +ND
Sbjct: 127 KKRLEEYINYSAYYDSLTGLPNRILFRNDLKTILDNYK-----NGALIFIDIDDFKSVND 181

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +LV  ++ I   ++    L RL G+ F +++   N+  ++    + +   +
Sbjct: 182 TFGHDYGDLLLVIFSQLIAMCIEPYGTLYRLGGDEFMLLIDKLNSYNELKKLCMEISHYL 241

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I +T SIG A +       +E+ K A+LA++ +K +G N    F+   F 
Sbjct: 242 KNPFEVKEKQIYITISIGIALFPEDSSDVAELYKYADLAVFESKQKGKNTTTFFKKELFY 301

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R  +  +++L  A+EN+ELY++Y P I  ++ +++G E+L++W + K G IS  EF+ 
Sbjct: 302 FYRRKLIIEQELKTAIENNELYILYQPQIDAVENKVIGFESLLRWKNRKLGFISPQEFIP 361

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E   +I  I  ++L  + + I   + +       I +N++   L +++    +  +  
Sbjct: 362 ICESTGIIIDIGEWVLNSVCKMIYELQLKGFKIE-TISVNVSPIQLRNSDFITRLINICE 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K   SPS +++  +E  ++         L  L K G+ + +DDFGT  S L+YL  +P +
Sbjct: 421 KNQISPSLLEIEITEGTLIDLYACKIKTLDELLKKGVRVAIDDFGTGYSSLNYLTILPVN 480

Query: 880 TVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           T+K + S +    ++K  A+++SII + K++   IIA+ +  +  +  L  +GC+ IQ  
Sbjct: 481 TLKIDKSFIDNIESKKNKAVIKSIINLCKSLNYNIIAEGVETKRQLDCLLHIGCNIIQGY 540

Query: 939 HVASPLGFNSILKLLKERF 957
           + + PL  N I  +LKE+ 
Sbjct: 541 YFSKPLPVNKIENILKEKN 559


>gi|229130551|ref|ZP_04259507.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|228652890|gb|EEL08772.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
          Length = 885

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 28  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 85  L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 138

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 139 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 198

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 199 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 258

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 259 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 318

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 319 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 377 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 433

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKK-PFAVMFL 492

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 552

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 553 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 613 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 672

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 673 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 731

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 732 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 791

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 792 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 852 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 879


>gi|95930084|ref|ZP_01312823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133778|gb|EAT15438.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 928

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 257/566 (45%), Gaps = 26/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         V          G +               H +  
Sbjct: 375 QQNHRLLQAIDQSPICILMTTCDGRPVYLNQFFKEKTGYSLDECS----------HPD-- 422

Query: 462 DNFRTILDSFVGYRRG---------RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           +     +   +  + G             E  +R+ D   HW  I I  + +  G     
Sbjct: 423 NPIYQFIQQRIPAQCGSNDGRNYDEPWLEELEIRSKDGGIHWERISISLVYDLKGQCSHL 482

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I I  DITE+KK+ +     A  D+LTG+ NR    DRL   +  +         ++++D
Sbjct: 483 IVIGEDITEEKKNAQHFEFLATHDSLTGLANRLLLHDRLDQAILKAKRVHGTVF-LILLD 541

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K IND +G   GD +L  +  R+ ++++  D + RL G+ F ++L           
Sbjct: 542 VDRFKMINDSMGHDNGDRLLQLIADRLLKVVRESDTVVRLGGDEFVVLLSEVETLDDALC 601

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNH 691
            A A+ + ++ P  + ER+I +T S G  S+    ++S E+L++A++AMY AK       
Sbjct: 602 AAEAIHRELSEPFTVSERQIPLTVSAGICSYPDHGMSSLELLRHADVAMYKAKETHSQTC 661

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +    +     + + ++ +L  A+  +EL++ Y P +    E+IVG EAL++W H   G 
Sbjct: 662 IFESSMDGLVLESLELEAELRQAIVKNELHVYYQPKVDAGSEKIVGFEALLRWVHSDRGM 721

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS   F+ +AE+  +I  I L+++E + R +  W DQ     + + +N+++K     +L 
Sbjct: 722 ISPGVFIPLAEQTGLIHEIGLWVIEDVCRQLRQWADQDYAI-VPVAVNLSAKQFQSVDLA 780

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  ++       S  +   +ES++M NP  S  ++  L+ +G+ L +DDFGT  S L+
Sbjct: 781 KQVATILDSYHIDSSWFEFELTESMIMQNPLSSIRIMKELKDLGLRLAVDDFGTGYSSLN 840

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +   T+     A+  SII +A+++    IA+ +     +  L  
Sbjct: 841 YLRRLPLDYLKIDRSFIDDVTQDLSADAVATSIIGIARSLGMQTIAEGVETAEQLMFLKD 900

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
             CD+IQ  +   P+  +    LL+ 
Sbjct: 901 NNCDFIQGFYFYRPMPVDDATSLLER 926



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 11/169 (6%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDR 427
             L    V  ++ +   V   +       Q I    E+       S   +   D      
Sbjct: 218 ALLWALGVAGLLFLRHLVQSRLRREDEVQQEIALSEEKYRALFRDSLIGIAIADCTSGRI 277

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQYEF 483
           +     +A ++      + G  +     +H     +                 G +   +
Sbjct: 278 IECNKKLAHLVERTPEELIGKPQ---DILHPKFEKDQGSAVTQTFKKHQDEAHGEVLGSY 334

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +     Q   + I+   +  S G+     G+  D+TE+ K  +     
Sbjct: 335 -LITKSGQLKDVEIQGGTV--SFGNQNYQFGLFLDVTERNKFEQQNHRL 380


>gi|296505729|ref|YP_003667429.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296326781|gb|ADH09709.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 909

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 174/868 (20%), Positives = 349/868 (40%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             +I   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYIIYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +   S        +       +      L+  +      + A F   +Y++   ++ I T
Sbjct: 109 LFLFSFTFAFLYEI-----IYNRDLLEKLF-MLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +    I    +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKK-PFAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+ ++      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLEQIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|121608321|ref|YP_996128.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Verminephrobacter eiseniae
           EF01-2]
 gi|121552961|gb|ABM57110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Verminephrobacter eiseniae EF01-2]
          Length = 859

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 155/749 (20%), Positives = 299/749 (39%), Gaps = 22/749 (2%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279
              A A  +L  + + F      +   S ++ +W +          + F  M L      
Sbjct: 100 FGVAAACNLLHGMLLHFDAAHPPLLAGSADISLWLSSWARVAEVITLWFTAMRLSAPGLG 159

Query: 280 AKVGYITFSGIACIAIL-----FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
                +  +    I  L                         ++ L     ++    +  
Sbjct: 160 RTWLAVACAITLAIVGLSLGPLPGWFAQVAGSALHQPLALALALALIVAATVLQRSARRN 219

Query: 335 ERAVLLIPAWILIFIWF---IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           ++    I AW  +           + +   + + +     V    L+   +    I+   
Sbjct: 220 DQPRERILAWATMAFACGEITVGALGVHGSVASPLAHGLRVIAYALLYQAVFDAGIRRPF 279

Query: 392 ATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           A    ++    + E R +  V    D+V+  D     ++  P     +G     + G   
Sbjct: 280 ARIQEAESRLRESESRLARVVSAMPDMVFLKDADGVYLSVNPVFERFIGRPEHQIVGRND 339

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                        FR      +  R+  +  E    A D           P+ + +G + 
Sbjct: 340 --FDLTTPAQARQFRQNDQRAMQTRQPLVYEETLTFAEDGYQGRFETIKTPIRDLHGRVT 397

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +G+  DITE+K++ + I   AF D LTG+PNR+  LDRL   +        L   ++ 
Sbjct: 398 GVLGVCRDITERKRAAQEIERLAFYDALTGLPNRRLLLDRLQRSIATCQRTHKL-GALLF 456

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----N 625
           ID+D +K +ND LG  +GD +L  +  R+   ++  D +AR  G+ F ++L +       
Sbjct: 457 IDLDNFKDLNDTLGHDMGDQLLAQVATRLVASVRAADTVARFGGDEFVVMLEALAPDLRT 516

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            + +    A  +  S+  P  L   +   T SIG   +   +++  E+LK A+LA+Y AK
Sbjct: 517 ATAQAEMVADKLLASLNQPFALDGGQHYSTLSIGVTLFGEQRLSVDELLKRADLALYQAK 576

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F      +      ++ DL   +  +EL + Y P++      ++G EAL++
Sbjct: 577 AAGRNTQRFFDPDMQAAVNARSNLEADLRQGLARAELLVYYQPVVDHQA-RLMGAEALVR 635

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G I  ++F+ +AE+  +I  +  ++L+     +  W    +   + I +N++++
Sbjct: 636 WRHPQRGMIGPADFIPLAEQTGLILPLGQYVLQTACAQLQRWSQHPDTAGLSISVNVSAR 695

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                     +   +      P R+KL  +ES+++G+ E +   + +L+  G+   LDDF
Sbjct: 696 QFRQPGFVAQVLHQLKSHGADPRRLKLELTESLLLGDIEDTIARMAQLKSEGVGFALDDF 755

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D +K + S +    +     AI+R+I+ +AK+++  ++A+ +   
Sbjct: 756 GTGYSSLSYLKRLPLDQIKIDQSFVREVLADPNDAAIVRTILALAKSLDLQVVAEGVETT 815

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +  L   GC+  Q      P+      
Sbjct: 816 GQLSFLQLHGCEGFQGYLFGRPVPMEVFA 844


>gi|307825097|ref|ZP_07655318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733845|gb|EFO04701.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 741

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 145/567 (25%), Positives = 260/567 (45%), Gaps = 18/567 (3%)

Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
                 E   +A +   + + +   +  +  +        I G ++  + G     +   
Sbjct: 179 ESKRAEEELRIAAVAFEAQEGIMITNADKVMLRVNRAFTDITGYSAEELVGQMPHMFKSG 238

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H      F   +   +  R G  Q E   R      +   + I  + +S+G +  Y+G+
Sbjct: 239 RHSE---TFYAEMWECI-NRTGSWQGEIWDRRKSGDIYPKWVTITAVKDSDGTVTHYVGL 294

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+ +K S E I   A+ D LT +PNR+  +DRL   L  SA        ++ ID+D 
Sbjct: 295 HTDISTRKASEEVIKQLAYYDPLTALPNRRLLMDRLQQALAASARSKKY-GALLFIDLDN 353

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKI 630
           +K +ND LG  +GD +L  + +R+ + ++  D ++R  G+ F ++L       E  + K 
Sbjct: 354 FKSLNDHLGHDMGDVLLQQVAQRLIDCVREGDTVSRQGGDEFIVMLEDLSGSTEEAAAKA 413

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +  S+     L   E   T SIG   + + +   + +LK A++AMY AK  G N
Sbjct: 414 KTIGEKIITSLNQAYQLTSHEYRNTPSIGITLFINHQHEINMLLKRADIAMYGAKAAGRN 473

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F  +   +      ++ DL  A+  ++  L +    R  D + +G EAL++W HPK
Sbjct: 474 TLRFFDQNMQEAVTARAALEADLRFALTKNQFRLYFQRQARH-DGQTIGAEALLRWKHPK 532

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ +AEE+ +I  I  ++LE     +  W        + + +N+++      
Sbjct: 533 RGFVSPLEFIPLAEEIGLIIPIGQWVLETACAQLKRWESHPQTCNLQLAVNVSAHQFHQP 592

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E + A+++KT     R+KL F+ES+V  + + +   +  L+KIG+S ++DDFGT  S
Sbjct: 593 DFTEHVFAILNKTAIKAHRLKLEFTESLVFDDIDDTIAKMQVLKKIGVSFSIDDFGTGYS 652

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL  +PFD +K + S +           I+++II MA N+   IIA+ +  E  +  
Sbjct: 653 SLTYLTQLPFDQLKIDQSFVRNIGVKSTDTVIVQTIIGMATNLGMDIIAEGVETEEQLAF 712

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L   GC   Q + +   +      + L
Sbjct: 713 LELHGCHIYQGNLIGKTMPQEEFERSL 739



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    + +   R       +             +      A +LG+   ++    R+
Sbjct: 54  ELQHARVSLEASHNRYLNLYEFAPVGYLTLTPEGKIIEINLTAAALLGVERNNLVN--RH 111

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   +   D D +  +L + + +   +  +E  ++  D+ +    +   P+   +   + 
Sbjct: 112 FAGLVVPKDSDRWHRLLKNILEHEGEQKNFELMLKR-DDSYIHARLDCLPVITDDQTPVL 170

Query: 512 YIGIANDITEQKKSLEGILCNA 533
            I    DI+E K++ E +   A
Sbjct: 171 RI-TLTDISESKRAEEELRIAA 191


>gi|158522257|ref|YP_001530127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfococcus oleovorans Hxd3]
 gi|158511083|gb|ABW68050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfococcus oleovorans Hxd3]
          Length = 764

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 157/770 (20%), Positives = 316/770 (41%), Gaps = 49/770 (6%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271
             R    +  F      + + +I +      +      +L         ++  L +    
Sbjct: 13  TLRIKRFLMAF---GAYVIWSAICYVGYFLGLTKVPLYILSAGVAGSFIVNILLYLIFRT 69

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
            L+       +  I         ++     Y       +  + +    L+          
Sbjct: 70  GLNKKFQDKSLTLIQMVIATFWIMVVVYYAYEARSAVLLVYMVVLVFGLFRL-------- 121

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--H 389
               R    +   I   + F  +   + K     I     +  +V++  ++ +  +   +
Sbjct: 122 ----RIRQFLFLSIFALVNFSAVIFVLYKLQPGYINVRVDIFNIVVLAFILPWFSVVGGY 177

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +          F+  E   L      DIV+  D+  +    +P +  + G    ++    
Sbjct: 178 ITNLRASISRAFTTIE---LLTNNIEDIVFVVDLDLNYTYVSPSVKILRGYEPEAVMKQA 234

Query: 450 RNWLPYIHINDRDNFRTILDSFVG---------YRRGRLQYEFRVRAADNQFHWMIIRIR 500
            +       +  D     L   V           +   LQ E  ++  D    W   +  
Sbjct: 235 LS--DSFAPSSLDLAMRTLSEAVALGKSGGTEYNKSRTLQLE--IKKKDGTTVWTETKFS 290

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + N   +  +G++ DITE++ + E I   A  DNLT +PNR  F   L   +  +  
Sbjct: 291 FVRDKNKQTVGILGVSRDITERRLAEEKIRYLATHDNLTELPNRTLFGQMLGRAIKFAQR 350

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK----------FPDILA 610
               +  V+ ID+D++K IND +G   GD +L  +  R  + L+             ++ 
Sbjct: 351 YQR-QFAVLFIDLDRFKIINDTMGHDAGDQLLKEIASRFRQSLRAVDVVGRLNEKDSVVG 409

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ F +++    N  ++A  A  +  +   P+ LL  E  VTASIG + +       
Sbjct: 410 RLGGDEFVVLIEEVTNLSQVATVAQKILNTAIKPMVLLGEECRVTASIGISVYPDDGEDE 469

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728
             ++K A++AMY AK  G N+ + +  ++         ++ +L  A+E +ELYL Y   +
Sbjct: 470 RTLMKKADMAMYFAKEEGKNNFQFYSQNTHSPAFERFFVEAELRHALERNELYLDYQAKL 529

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 I G EAL++W +P  G ++ ++F+ +AEE  +I  I  ++++      ++W+ Q
Sbjct: 530 DFKTGAITGSEALLRWRNPGLGLVAPTQFLPVAEETGLIVPIGRWVMKTACAQNVAWQRQ 589

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              PP+ + +N++ + L+D++L E ++  +  +  +P+ ++L  +ES+VM  P     LL
Sbjct: 590 GL-PPVTVAVNLSLRQLMDDKLIEDIRTALEASGMAPNLLELEITESIVMHKPAPLIELL 648

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
            R++ +G+ + LDDFGT  S L+ + ++P DT+K + S +           I+ ++I M 
Sbjct: 649 ARIKSLGVRIALDDFGTGYSSLAQIKHLPVDTLKVDRSFIRNLQQNPDDREIIEAVIAMG 708

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +   +IA+ +        L    CD +Q  + + P+  +    LL + 
Sbjct: 709 RALSLNVIAEGVETLAQDTYLREHICDEMQGFYFSKPVAPDQFADLLSKH 758


>gi|89893970|ref|YP_517457.1| hypothetical protein DSY1224 [Desulfitobacterium hafniense Y51]
 gi|89333418|dbj|BAE83013.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1002

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 136/573 (23%), Positives = 277/573 (48%), Gaps = 10/573 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q         + +    E Q L +  + D +WDWD++RD        +++LG     +  
Sbjct: 432 QQFDELLSNQRQLKETQELQELVLEAAIDAIWDWDMIRDIRVYHSKNSSLLGYKGDEIR- 490

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            + +W   +H +D+  F+  L+  +  +  R   ++R++  D ++ W+    + + + +G
Sbjct: 491 SVEHWNALMHPDDKAEFQKKLNQHLFEKTARYSCDYRIKDKDGEYKWIRAFGKALYDQSG 550

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  R +G   DIT+ K+    I   A+ D LTG+PNR    + + + +  +  +      
Sbjct: 551 NPYRMVGSHRDITDIKEKEMHIKYLAYHDFLTGLPNRAQIQEIIKSEILKA-EEQGTLLG 609

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +DID +K IND  G   GD +L++++R + ++L    ++ARL+G+ F I++      
Sbjct: 610 VLFLDIDNFKAINDSFGHPTGDQLLITISRHLTQIL-DNHVVARLAGDEFLILIRDIQEK 668

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +  D+A  + K     + + ++   ++ SIG   +     +   +L NA+ AM+ AK  
Sbjct: 669 EQAIDYAERIMKLFETALVIYKQYCYISTSIGITFYPQDGESYESLLINADTAMHKAKEL 728

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G  +   F +   R   ++  I+ +L  A+E  E  L Y P +     +++GLEALI+W+
Sbjct: 729 GKRNYVVFNMEMKRAVVEKAEIQNNLRKAIEFEEFVLHYQPQVEPHTGKVLGLEALIRWE 788

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             +   I  ++F+ +AEE  +I  I  +++      +    D      + + +NI+++ L
Sbjct: 789 -KEHKLIPPNKFIGVAEETGLIVPIGDWVVATACAFLKKLHDLGYRE-LTMSVNISARQL 846

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFG 864
            ++   E +  ++      PS+++L  +E++++   +     +L RL +  I ++LDDFG
Sbjct: 847 QEDRFVEKVLKVLRDNDLDPSKLELEITETMLIEFLDAKISNVLARLIENDIKISLDDFG 906

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S L+Y+  +P  T+K + S +     T +   I   I+ MA  +   ++A+ +    
Sbjct: 907 LGYSSLNYIKQLPISTLKVDKSFIDDIQSTPESKNITGLIVIMAHQLGLKVVAEGVEKPE 966

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L +  CD IQ    + PL    ++K+L +
Sbjct: 967 QREYLIKYDCDAIQGYLASKPLPEEELIKVLNK 999


>gi|163802198|ref|ZP_02196093.1| hypothetical protein 1103602000603_AND4_17439 [Vibrio sp. AND4]
 gi|159174003|gb|EDP58813.1| hypothetical protein AND4_17439 [Vibrio sp. AND4]
          Length = 815

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 149/579 (25%), Positives = 271/579 (46%), Gaps = 16/579 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V ++G T              + S           S + +   D   + +        I
Sbjct: 248 LVGILGMTRNVTRRKMVEAQLSLASK------IFDNSHEGMVITDRKANILDVNGAFTHI 301

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G  +  + G   N L   H +    F   L   +  + G+ + EF  R  D   +  + 
Sbjct: 302 TGYTAEEVIGKNPNILRSGHHD--SQFYKQLWRQLESK-GQWKGEFINRKKDGSIYPQLA 358

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I  + +    ++ YI +  DI+ +K   E +   AF D LT +PNR   ++ L   ++ 
Sbjct: 359 TISAVMDDKDQLINYICVFEDISVRKTHEEKLQRMAFYDPLTNLPNRTHLINLLEQHIEN 418

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
              + ++    + +D+D +K IND +G   GD +L  L  R+ ++L     +AR+ G+ F
Sbjct: 419 GHKNQHI-FATLFLDLDHFKHINDSMGHFCGDQLLTKLGERLQDVLHLRAHVARIGGDEF 477

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKN 676
            ++L + ++  ++ D    +      P  +   E + ++ SIG A +      S  +LKN
Sbjct: 478 VVVLPNIDSESQLIDTIEDILSLFNHPFEVSNNESLRISTSIGVARYPQDGQDSETLLKN 537

Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N    +           V I+  L  A+E ++L+LVY P   L   E
Sbjct: 538 ADTAMYLAKKNGRNGYAFYSPDLTDKSVSHVRIQSALHEAIEKNQLHLVYQPQYNLSANE 597

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG+EAL++W HP  G IS ++F+ IAE+  +IK I  ++LE+      +W D       
Sbjct: 598 LVGVEALLRWQHPDLGMISPADFIPIAEKTGLIKNIGKWVLEQACLQGRAWLDDGIEFG- 656

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+++  L  +     ++ ++ +T +   R++L  +ES ++ +P+++   L  LR++
Sbjct: 657 KLAVNVSALQLQQSNFISKLEGILQETKFPTYRLELEITESFLLIDPQQAIASLNSLREL 716

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           GI ++LDDFGT  S LSYL  +P + +K + S ++         AI+ +II M K++   
Sbjct: 717 GIEISLDDFGTGYSSLSYLKGLPINKLKIDRSFVSDLPGDTDSNAIVNAIIAMGKSLSLK 776

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +IA+ I  E   + L    C Y Q    ++P+   ++ K
Sbjct: 777 VIAEGIETEEQAQYLCEHDCVYGQGFLFSAPVRAENLFK 815



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 54/200 (27%), Gaps = 7/200 (3%)

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
            ++ +   P W+          + I     + +I   L      I   +  T  +     
Sbjct: 79  QDQTLSYCPIWLP-SGELFAALVLIHPTAQDAVISGWLSALTGRISFDVSQTYYREQKRH 137

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                 +    +     +    D  W          T   +     +A   + G      
Sbjct: 138 DVQLAELLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEESWQMAGSDIVGKND--F 192

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                     F       +         E  +   +    W+     P+ N  G+++  +
Sbjct: 193 ELFSSRRARKFIDTDQLVIATGSQNTVEECTLIDDNKNPTWLETIKSPIRNRTGELVGIL 252

Query: 514 GIANDITEQKKSLEGILCNA 533
           G+  ++T ++K +E  L  A
Sbjct: 253 GMTRNVT-RRKMVEAQLSLA 271


>gi|119773519|ref|YP_926259.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119766019|gb|ABL98589.1| sensory box protein [Shewanella amazonensis SB2B]
          Length = 1491

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 138/559 (24%), Positives = 254/559 (45%), Gaps = 13/559 (2%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            + ++ +  + A   + + V   D             +ILG     + G     L   H  
Sbjct: 928  LQNEVDLLAQAFENTSEGVLILDADEQIKVANRAAQSILGAGMAELAGRKFIALLTEHGT 987

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            +R    T+L +           E  +R    Q   + + +  M    G +  Y+ + +DI
Sbjct: 988  NRSEIATLLAN-----GMSWTGERELRIGSGQVCPVWLNVSVMLGLQGKVQHYVVVFSDI 1042

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            TE+K+S   +   A  D LTG+PNR  F  RL   +  +  ++  +  +M +D+D++K +
Sbjct: 1043 TERKRSEADLRRLANYDVLTGLPNRSLFAARLNQAIHKATQNEE-KLALMFLDLDRFKHV 1101

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND  G  +GD +LV    R+   +     L R  G+ F +++        +   A  +  
Sbjct: 1102 NDSFGHGMGDALLVEAAARLQSCIDPEYTLCRFGGDEFVVLIHG-AEVDTLNHLANTILG 1160

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             I  P  L  RE  ++ SIG + W         ++KNA+LAMYHAK  G  + + +    
Sbjct: 1161 QIETPFKLFGREFYISTSIGISIWPDDARQPEALIKNADLAMYHAKEEGRGNFQYYSQER 1220

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + ++ DL  A+E  E  L Y P +    D +++G+EAL++W HPK G I +  
Sbjct: 1221 NAEALYHLRLEADLRKALERQEFCLHYQPQVDVNDDNQVIGMEALLRWQHPKDGYIRTDI 1280

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AE   ++  I+ ++L +   D   W  +    P  I +NI++      +  + ++ 
Sbjct: 1281 FIKVAEACGLVIDIDKWVLRQACLDGARWSRKLKR-PFKISVNISAVHFRQPDFIDHLRR 1339

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             + +T      + L  +E V+M     +R  L  LR++G+ + +DDFGT  S L+YL + 
Sbjct: 1340 TLEETCIPVENLALEITEGVLMKELHIARDHLRLLREMGVQVAIDDFGTGYSSLAYLRHF 1399

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              + +K + S +    +     AI+ SII +A+N++  ++A+ +     + ++   GC  
Sbjct: 1400 DVNLLKIDRSFLIDIADNQADQAIVSSIIELARNLKLKVVAEGVETREQLNQVLSRGCHV 1459

Query: 935  IQDSHVASPLGFNSILKLL 953
            IQ  + A P+  + +   L
Sbjct: 1460 IQGYYFAKPMARDDMDAYL 1478



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+  L+L+ + I     + V    + +  +    +R   ++ GS   +W W    +    
Sbjct: 775 LIVILMLLTLAIILIRHRQVERFRHMNTALLESEDRLRQSLRGSDSDLWMWTRKDNAFYM 834

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +L +    +      +   IH +DRD   +   + +     R + E+R +    
Sbjct: 835 DNR-NGVLSVEQQVLKVNFEEFP--IHPDDRDRVVSHWLAVINGEIERFEAEYRFQRRTG 891

Query: 491 QFHWMIIRIRP--MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP  ++   G++ +  GI +DIT+ K     +   A
Sbjct: 892 TWGWLRVRGRPSQLNKETGEVEKISGIYSDITQHKLLQNEVDLLA 936


>gi|163748913|ref|ZP_02156165.1| sensory box protein [Shewanella benthica KT99]
 gi|161331687|gb|EDQ02492.1| sensory box protein [Shewanella benthica KT99]
          Length = 807

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 146/609 (23%), Positives = 274/609 (44%), Gaps = 18/609 (2%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
           +   L      P  V    L  I   F      L        +    +R   A+  S + 
Sbjct: 197 VNGSLPKWQASPVTVAFSELEAIRNHFINFSDKLKRSEKQ--LEDSQQRWLFAIEVSRNG 254

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +WDW+   D V  +     +LG +   +   +  W   +H  D+ +    L+ ++     
Sbjct: 255 IWDWNFATDEVFLSDRWKEMLGYSEDELANELSTWEALLHPQDKKDALFSLNQYLNNEVD 314

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
             +   R+R     + W++ R   +  +  G   R IG   D+T    + + IL  A  D
Sbjct: 315 EFENVHRLRHKLGHYIWVLDRGMIVEWDEKGKATRMIGTHTDVTSDVINKQVILHQAKHD 374

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LT +PNR S    L  +  L  +   +   + +ID+D +K IND LG   GD +L+ + 
Sbjct: 375 LLTDLPNRSSL---LDALYSLKESKQEVSAGLFLIDLDNFKMINDALGHHYGDRLLIQVA 431

Query: 597 RRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLERE 651
            R+        ++ RL+ + F ++  +      +   +I   A  +R+ I    ++  + 
Sbjct: 432 ARLSSFFATNSLIVRLAADEFVVLAKNLPQDKNSAKRRIHALASQVRQIIGRSFHINNQT 491

Query: 652 ITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIK 708
            +V+AS+G     S  +I    +LK A++AM+  K RG +    +           + I+
Sbjct: 492 FSVSASVGACFIDSQIEIEPELLLKQADVAMHQVKERGRDGYLLYSAEMEEVAQHSLFIQ 551

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+   +L LVY PI+      +V +EAL++W+HP+ GNI  S F+ +AE   +I+
Sbjct: 552 SELRGAIAEKQLSLVYQPIVDCR-GLVVCVEALLRWNHPQMGNIPPSTFIPLAEGSGLIE 610

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++L      I + ++   +    + IN++++     E  E +  ++ +    P+ I
Sbjct: 611 ELGEWVLLEACAFINTLQETGVLLDA-VAINVSARQFNQGEFAEDLLKVLHRLGIKPNAI 669

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E  ++ N +  +  + +LR+ GIS+ +DDFGT  S LSYL  +P   +K + S +
Sbjct: 670 ELELTEYALLTNLDVVKQAMDKLRQAGISIAIDDFGTGYSSLSYLQSLPLSRLKLDASFV 729

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +     E   AI+++II MA  +   ++A+ +  +   + L + GCD  Q    + PL  
Sbjct: 730 SKIDVNESSNAIVKAIIDMAHGLNLNVVAEGVETQTQYEFLLQHGCDSFQGYLFSRPLKQ 789

Query: 947 NSILKLLKE 955
             I+  ++ 
Sbjct: 790 ADIVNYIES 798


>gi|219847495|ref|YP_002461928.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Chloroflexus
           aggregans DSM 9485]
 gi|219541754|gb|ACL23492.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus aggregans DSM 9485]
          Length = 699

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 144/565 (25%), Positives = 263/565 (46%), Gaps = 6/565 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +          +  S D +   D        +P    ++G A   M     N   
Sbjct: 129 QAEQALRQSERLFRAMIERSSDAISIVDRAGRVRYASPSTRHLIGYAVDGMLAVPINGFA 188

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH  DR+  R + +  + +    +  +FRVR A   + W+        + +  +   I 
Sbjct: 189 VIHPTDRERVRQLFNKLIQHSGSSVTADFRVRHAKGGWRWIEATASNWLD-DPAVQGVIV 247

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DITE+K     +      D+LTG+PNR    DRL   +  S  + + +  ++ +D+D
Sbjct: 248 NYRDITERKLMELRLQHGMLHDSLTGLPNRLLLNDRLLQAIKRSHRNLHYQFALLFLDLD 307

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND  G  +GD +LV++  R+   L+  D  ARL G+ F I+L    +        
Sbjct: 308 HFKFINDSFGHPLGDRLLVAIASRLSSCLRTVDTCARLGGDEFVILLDDIASPTDAIRIV 367

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +++P  +  R    + SIG     ++    S+ML++A++AMY AK  G      
Sbjct: 368 ERILRQVSLPFEIDGRLFHTSVSIGIVFGANNYTDPSQMLRDADIAMYQAKMAGKGRYRI 427

Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +       R+ ++ +L  AV N E  + Y PII L    +VG EAL++W HP  G +
Sbjct: 428 FEPAMREAAQIRLDLEHELRRAVANHEFCVYYQPIIHLPSGRLVGFEALVRWRHPTRGIL 487

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELC 811
             + F+ +AEE  +  +I   +LE++ + ++ WR        + + +N++++ ++   L 
Sbjct: 488 LPAAFLHVAEEAGLNDSIGWQVLEQVCQQLVVWRRLNPRAAALSVSVNLSARQVMQPNLY 547

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+++    P+ +KL  +ES  M        LL RLR+ GI + +DDFG   S LS
Sbjct: 548 DRLMQLLAQYQVPPTALKLELTESTFMEYSHDVAALLNRLREQGIQIAIDDFGVGYSSLS 607

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + + +     K    AI+ +I+ +A N+   ++A+ +  +  +  +  
Sbjct: 608 YLVQLPIDQIKIDRNFIVQLESKQHSQAIVNTIVNLAHNLNLEVVAEGVETQGQLDWIRA 667

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
           +GC Y Q   +  PL  +   ++++
Sbjct: 668 VGCQYGQGYLIGLPLTADEATQMVQ 692


>gi|89902019|ref|YP_524490.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Rhodoferax ferrireducens T118]
 gi|89346756|gb|ABD70959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Rhodoferax ferrireducens T118]
          Length = 1036

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 139/566 (24%), Positives = 249/566 (43%), Gaps = 18/566 (3%)

Query: 402  SDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI 458
                   +A +   S + +   D     +        I G ++    G   R      H 
Sbjct: 469  QAEAELRIAAVAFDSLEGMMMTDASSVILRVNKAFTEITGYSAEEAVGQTPRLIQSGRHG 528

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D   +R + D     R+G  Q E   R    + +  ++ I  + +++G +  YI   +D
Sbjct: 529  ED--FYRAMWDDIR--RKGGWQGEVWNRRKSGEVYPQLLSISVVKDADGTVTHYIAAHHD 584

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+E+K + E I   AF D LTG+ NR   LDR    +  S+ D +    +M ID+D +K 
Sbjct: 585  ISERKNAEERIKELAFFDQLTGLANRTLLLDRAVQTMAASSRDGSF-GALMFIDLDNFKM 643

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADF 633
            +ND LG  +GD +L  + +R+   ++  D +ARL G+ F + L                 
Sbjct: 644  LNDTLGHDMGDILLKQVAQRLNTCVRDGDTVARLGGDEFVVKLAGLGTVAGEAAVSAETV 703

Query: 634  AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            A  +  ++     L       T SIG   +    +   E++K A+LAMY AK    N V 
Sbjct: 704  ADKILTALNQTYQLGSVAYHSTPSIGVTLFKGQSVAIEELMKQADLAMYRAKAASRNTVR 763

Query: 694  SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F  +      V   ++ DL  A+E  +  L Y   +   D  + G E L++W HP+ G 
Sbjct: 764  FFDPAMESVMMVRAALERDLRQALEEHQFVLHYQAQVAG-DYHLTGAEVLVRWQHPQRGM 822

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            +   +F+  AEE  +I  +  ++L+     +  W  +     + + +N++++     +  
Sbjct: 823  VWPDDFIPAAEETGLILPLGHWVLQTACTQLTIWAARPETADLTVAVNVSAQQFRQPDFV 882

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              + A+++ T  +P R+KL  +ES+++ N +     +  L+  G+  +LDDFGT  S LS
Sbjct: 883  AQVLAVLAATGANPQRLKLELTESLLVSNVQDLIEKMAALKAKGVGFSLDDFGTGFSSLS 942

Query: 872  YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P D +K + S +    +     AI ++II +A+++   +IA+ +        L +
Sbjct: 943  YLKRLPLDQLKIDKSFVRDVLTDPNDAAIAKTIIALAQSLALGVIAEGVETSAQRDFLAQ 1002

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKE 955
             GC   Q    + P+      +L   
Sbjct: 1003 AGCQAYQGYFFSRPVPLEDFEQLCAA 1028



 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 4/153 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + V      ++ +    E+       +    VW W +        P +    G       
Sbjct: 334 RAVRLAATMTRELRESEEKFRAIADCTVNLEVW-WGLDGRPRWINPSVKDYSGYTVQECL 392

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    IH  D       L   +   RG    EFR    D    W+     P+ ++ 
Sbjct: 393 AMPDFAGTLIHPEDMPRVAPELQKGLQGLRGD-DLEFRCVRKDGSVFWLSASWVPIQDAK 451

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF-QDNL 538
           G    +     D+T++K++   +   A   D+L
Sbjct: 452 GVFTGFRTSGRDVTDRKQAEAELRIAAVAFDSL 484


>gi|89094624|ref|ZP_01167561.1| hypothetical protein MED92_00325 [Oceanospirillum sp. MED92]
 gi|89081094|gb|EAR60329.1| hypothetical protein MED92_00325 [Oceanospirillum sp. MED92]
          Length = 1217

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 128/563 (22%), Positives = 250/563 (44%), Gaps = 15/563 (2%)

Query: 404  GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIN 459
             +R   A      + + V   D+            ++ G     + G     L    H  
Sbjct: 661  EDRLRQAAAVFGSTNEGVMITDVDGQIQMVNEAFCSLTGYGKDEVIGQPAKILQSGRHSA 720

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
              + +  + +S      G  Q E   R  D   +   + I  + + +  +  Y+G+ +DI
Sbjct: 721  --EFYHEMWESI--NDVGSWQGEIWNRRKDGTTYPEWLSISAVKDDDNRVNHYVGVFSDI 776

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            ++ K+S + +   A  D LTG+PNR     RL   L  +   +      +++D+D++K +
Sbjct: 777  SQLKESEQKLNHLAHHDMLTGLPNRLMLQTRLDQALAQARRKNTSLAL-LLLDLDRFKDV 835

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND  G + GD++L  +   + E L+  D++ R+ G+ F I+L    +       A  +  
Sbjct: 836  NDSFGHSAGDELLKQVASILKEGLREVDLVCRMGGDEFAILLEDIQHPEDAGKVASKVTS 895

Query: 640  SIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A   N+    E+ +  S+G + +      S  +L++A+ A+Y AK  G      F   
Sbjct: 896  LLAKSWNISNGYEVAIGGSVGISLFPEQSGDSQALLQHADAALYRAKSEGRGRFHYFTEE 955

Query: 699  --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   R+ ++  L   +  +EL + Y P I +   ++VG EAL++W+ P+ G I  +E
Sbjct: 956  LTRDARKRLDLEARLIKGIARNELEVYYQPQIHIATGKLVGAEALVRWNDPEHGLIGPNE 1015

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AE+  +I  I L +L++    + +W D     P  + +N+++  L  +++   +  
Sbjct: 1016 FIPLAEQTGLINDIGLLVLKQGCSQLKAWLDA-GCEPFALAVNLSAVQLRHSDIRPVIAN 1074

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +T      ++L  +ES +M   + S  LL  LR +G+ + +DDFGT  S L+YL   
Sbjct: 1075 VLEETGLEAKYLELEITESALMEREQESIQLLDSLRSLGVRIAIDDFGTGYSSLAYLKKF 1134

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K + S +      +  + I  +I+ M  ++   ++A+ +  E  +  L    C Y
Sbjct: 1135 PLDVLKIDKSFVDDIPADKDDMVIAATIVAMGHSLGLQVLAEGVETEEQLAFLRSKNCHY 1194

Query: 935  IQDSHVASPLGFNSILKLLKERF 957
             Q    + P+  +     L    
Sbjct: 1195 YQGYLRSKPVPADQFANFLTYHN 1217



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 95/339 (28%), Gaps = 55/339 (16%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +++ +      S+ +    E     +  S D  W  D     +      A + G +  
Sbjct: 526 LAILEDITEQRLASEALKESAETYFSIITTSQDGFWIVDQQARFLDVNEAYAKMSGYSRE 585

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       L  I   D       ++        R   + R    +   + + +     S
Sbjct: 586 ELMSMSIGDLDAIETPDVTK--KRIELIKHQGGQRFLTKHR--RKNGDIYDVEVNATYWS 641

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G   R+     D+TE+                          DRL      +A   +
Sbjct: 642 GGGG---RFFVFLRDVTERINY----------------------EDRLRQA---AAVFGS 673

Query: 564 LRPTVMVIDIDK-YKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               VM+ D+D   + +N+      G    D+V+    + +           R S   + 
Sbjct: 674 TNEGVMITDVDGQIQMVNEAFCSLTGYGK-DEVIGQPAKILQS--------GRHSAEFYH 724

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +  S N+           RK                 SI           +  +   ++
Sbjct: 725 EMWESINDVGSWQGEIWNRRK--------DGTTYPEWLSISAVK-DDDNRVNHYVGVFSD 775

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
           ++      +  NH+    + +   +R+M++  L  A+  
Sbjct: 776 ISQLKESEQKLNHLAHHDMLTGLPNRLMLQTRLDQALAQ 814



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      +Q +  + +R  +    S   +       + ++       + G    
Sbjct: 398 VAIARDLTERMESTQKLIENEQRFRMLFDESPISMAYVSFSGEVLSLNKRFTEVFGYTKD 457

Query: 444 SMHGPIRNWLPYIHI--NDRDNFR----TILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
                + +W    H     RD  R      LD            E++V     +   +  
Sbjct: 458 D-VPTLEDWFIKAHPQQEYRDQVRTRWGHSLDGAKSGNHTIPAAEYQVICKQGKTKLI-- 514

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
               ++  +G    ++ I  DITEQ+ + E +  +A  
Sbjct: 515 TASGVTTEHG----FLAILEDITEQRLASEALKESAET 548



 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 7/173 (4%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +   L    I  +L G  +  +        + +L +    + I    E     V    D
Sbjct: 247 VLAGILTRHDIAKSLQGSYIEYLQETLDRKNRDLLDSESRLREIEQR-EFYQDLVDQVSD 305

Query: 417 IVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            ++  D      +      A  L +    +             N    F + L       
Sbjct: 306 SIFVIDAEDSRILDANQKAADNLRMPLAELLNLRVVDFSVAVPNLEYWFDSFLPKLREGE 365

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              +      R AD     + ++ R +    G+    + IA D+TE+ +S + 
Sbjct: 366 VLTISDH---RRADGSVFPVEVKARLV--QLGNREYVVAIARDLTERMESTQK 413


>gi|312962062|ref|ZP_07776559.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311283872|gb|EFQ62456.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 1092

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 147/586 (25%), Positives = 272/586 (46%), Gaps = 26/586 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             T ++ +         + +  E+ + A   S D +   +    R V        + G  +
Sbjct: 516  VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERETGRYVEVNDGFCRLTGYRA 575

Query: 443  GSMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                G     I  W         +N R+ L + +  +      E            + + 
Sbjct: 576  EEAIGLTLYQIGIWAD-------ENQRSALLAELQIKSRIHHMEMIWHNKRGDLLAVEVS 628

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + P++    +    +  A D++  K +   I   A+ D LT +PNR   +DRL+  + L 
Sbjct: 629  VEPITL--NETPCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 686

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F 
Sbjct: 687  KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFV 745

Query: 619  IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L   + S      ++      +R+ ++ P+ L  + + VT SIG A       T +++
Sbjct: 746  VLLSGLDGSRTQVSKQVQALTDTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPADL 805

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            LK A++A+Y AK  G N  + F  S  R+  +R+ ++ DL LA+   E  + Y P +   
Sbjct: 806  LKRADIALYRAKDSGRNTTQMFHNSMQRTASERLRMETDLRLALSRGEFSVHYQPQVDAR 865

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              +I+G EAL++W HP+ G  S SEF+ + E+  +I  +  ++L+           +  +
Sbjct: 866  GNKIIGAEALVRWHHPELGAQSPSEFIKVLEDSGLILEVGTWILDEACAAFEQLIKEGKV 925

Query: 792  PPIFIL--INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P+     +NI+ +    N+  E ++  +++     S +KL  +E +V+ N + +   + 
Sbjct: 926  DPLNFSLCVNISPRQFRQNDFVEKVEHSLNQHSLPYSLLKLEITEGIVIQNLDDTISKMR 985

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            RL+K+G+S  +DDFGT  S L+YL  +P D +K + S +  +        I+R+I+ MA+
Sbjct: 986  RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMAR 1045

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++   +IA+ +     +  L ++GC   Q    + PL      +LL
Sbjct: 1046 SLNLEVIAEGVETLEQLAFLQQLGCHLFQGYLHSRPLPIEGFRRLL 1091



 Score =  115 bits (287), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 11/169 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +            Q +    ER  LA+  +    WDW I    +  +   A + GL   
Sbjct: 262 ISTFLDTTERKNAEQALKDSQERLDLALDSAQLGTWDWHIPTGMLYGSARAAQLHGLPPE 321

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             H     +   +   +RDN R+   +      G  Q  +RV   D    ++  R R   
Sbjct: 322 PFHESFDAFFEGMPDEERDNMRSAYRTLREGPAGNYQLTYRVPMEDGTSRYLESRARLYR 381

Query: 504 NSNGDILRYIGIANDITEQKKSLEG---------ILCNAFQDN--LTGI 541
           +  G  LR  G   DIT+Q +  +           L  A  D   +TG+
Sbjct: 382 DERGAPLRMAGTLLDITDQVEREQRLSASEEKFASLFQASPDPICVTGL 430



 Score = 84.6 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 13/156 (8%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W W+I   +++ +     + G            +L  +   DR        + +      
Sbjct: 44  WYWEIDSGKISWSRGTQALFGFDPRQPLPKDLEYLDLLAPEDRARVIRAFHAVLAGEPFE 103

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK------SLEGILCN 532
                R+R  D   HW+ I    + +  G   R IG+  +IT Q++        E     
Sbjct: 104 QAMHHRIRWPDGSQHWLEINGSLLPDKAGR-RRMIGVIREITHQREREAALSHSEKRFAT 162

Query: 533 AFQDNLTGI-PNRQSFLDRLTTILDLSATDDNLRPT 567
            F      + PN      +   ++  +     +   
Sbjct: 163 LFH-----LCPNMVLLTRQSDGLISEANQYFEMLFG 193



 Score = 47.6 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 12/159 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +    +     V   P      G  +
Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQASPDPICVTGLDSGAFVEINPAFTQTFGWTA 450

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +     + +     +D +     ++  +  +         V   + Q    +I  R +
Sbjct: 451 AEVIDKSADQIGLW--DDSNQRVQRIERVIRDQALS-NVAVVVHHKNGQSLTCVISSRLI 507

Query: 503 SNSNGDILRYIGIANDITEQKK------SLEGILCNAFQ 535
               GD    +    DIT+Q++      + E     AF 
Sbjct: 508 K--VGDQPCIVTTLRDITQQQRSEAALKASEEKFAKAFH 544



 Score = 44.6 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 21/177 (11%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442
             VI+ +         +    +R +       ++V         ++        + G   
Sbjct: 137 IGVIREITHQREREAALSHSEKRFATLFHLCPNMVLLTRQSDGLISEANQYFEMLFGWPV 196

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G     L   H       R  L      +   +  E +  A++ Q H   +  + +
Sbjct: 197 ADAIGRTTLDLGLWH---HPEQRMQLVKATQRKGEPITMEVQFCASNGQIHDGTLSAQKV 253

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
               G+    I    D TE+K +       A +D+           +RL   LD + 
Sbjct: 254 ELE-GE-AYLISTFLDTTERKNAE-----QALKDS----------QERLDLALDSAQ 293


>gi|134103559|ref|YP_001109220.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008080|ref|ZP_06566053.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916182|emb|CAM06295.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 687

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 145/635 (22%), Positives = 282/635 (44%), Gaps = 23/635 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT----------VIQHVL 391
            A  +  I    L         +   + A + G V    +                  + 
Sbjct: 56  LARTVDLIGANLLRTLKLGPGPDWDCRIAALQGAVCSGFVQAVRKRTLDEQEAIRQAVLD 115

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     Q + +   R       +   +   D+    +     +  ILG  +  + G + N
Sbjct: 116 ARDSVEQALRTSEARFRAIFTEAAIGIGIADMSGRILEVNASLRRILGRPAEKLRGSMVN 175

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +IH  D      + +  V   R + + E +    D    W  + +  +   +G  L 
Sbjct: 176 --DWIHPADNAGIWRLYEEMVRGERDQYRVEKKFSRPDGGTVWTEMIVSLVRGEDGLPLY 233

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+T+++   E +   A  D LTG+PNR  FL++L   L+        R  +  +
Sbjct: 234 QVAMIEDVTDRRLLQERLRHQAMHDPLTGLPNRALFLEKLGVALEN--HGPGERVALCYM 291

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKI 630
           D+D +K IND LG  VGDD+L++++ R+         ++AR+ G+ F I++     + + 
Sbjct: 292 DLDGFKVINDSLGHHVGDDLLIAVSERLALSARGENRLVARMGGDEFVILVQDSPGTEQA 351

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A  +  ++  P+ +   E++V+ASIG         T++E++++A++ +Y AK  G  
Sbjct: 352 IEVADRVLDALVEPVRIGGHELSVSASIGIVERPVRGQTAAELMRDADVTLYWAKAEGKG 411

Query: 691 HVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F      ++  +  +   +  A+++ E Y+ Y P+I L D  +VG+EAL++W HP+
Sbjct: 412 QWALFDPDRNATEVAQFRLSAKMPAALDSEEFYVEYQPLIGLRDFGVVGVEALVRWWHPE 471

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +    F+ +AEE  +I  +  ++L +  R    W+D+      F+ +N+A +   D 
Sbjct: 472 LGRLGPDRFIGLAEETGLIVPLGRWVLRQACRQARQWQDEFGDAAPFVSVNLAVRQSRDP 531

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + + A++ +T   PSR++L  +ES +MG  +     L  L ++G+ + +DDFGT  S
Sbjct: 532 NLVDDVAAILRETGLEPSRLQLELTESAIMGTADEPLDALRALSRMGVRIAIDDFGTGYS 591

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
            L+YL ++P   +K  GS M G             I+ +++ +A  +  T+ A+ +    
Sbjct: 592 NLAYLRHLPVHELKIAGSFMEGLRDAERADPVDARIVGTLVDLAHALGLTVTAEGVETHA 651

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             + +  +GC+  Q    A P     I  ++ +  
Sbjct: 652 QARRVADIGCETGQGYFFARPCSPERINAIIADHL 686


>gi|224823444|ref|ZP_03696553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Lutiella nitroferrum 2002]
 gi|224603899|gb|EEG10073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Lutiella nitroferrum 2002]
          Length = 1054

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 139/551 (25%), Positives = 254/551 (46%), Gaps = 14/551 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467
                S   +   D     V        I G ++    G   + L                
Sbjct: 505  IFDTSSQAIVISDASNHIVMVNRAFTDITGYSAQEAIGRQPSLLSSGRQPPAFYQKMWQQ 564

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            L       RG    E   R  D   +   + I  + +  G +  ++ + +DI+E+K+   
Sbjct: 565  LAQ-----RGHWAGEIWNRRKDGTIYPEWLSISLLRDEAGQVSHHVALFSDISERKEQEA 619

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I   A  D LT +PNR    DRL   +  +A   N R  V+ +D+D +K IND LG A 
Sbjct: 620  HIRHMAEHDFLTDLPNRALIHDRLAQAIRAAARQKN-RLAVLFLDLDHFKNINDTLGHAH 678

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD++L  + +R+   ++  D + R  G+ F +I+    +  + A  A  +   +  P  +
Sbjct: 679  GDELLKQVAQRLQHTVRGSDTVGRNGGDEFVLIVPELASPAEAAQLAQRLLDDLRRPFQI 738

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
              + + ++ SIG + +  +     E+L +A+LAMYHAK +G N  + F    ++  ++R+
Sbjct: 739  DGQALAISTSIGISLFPDNGSELQELLVSADLAMYHAKAQGRNRYQFFTPELNAQVAERL 798

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             ++  L  A+E  +LYLVY P   + +  +VG EAL++W HP+ G IS + F+ +AEE  
Sbjct: 799  TLENHLRQALERQQLYLVYQPQFAIDNRRLVGCEALLRWQHPEQGLISPARFIPLAEETG 858

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  I  ++L+   R   +W       P+ + +N++++ L   +L   ++A +++     
Sbjct: 859  LIVEIGRWVLDEACRQAAAWLAAG--TPLRVAVNVSARQLGQPDLLAEVEAALARHRLPS 916

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
              ++L  +ES +M + E++   L   ++ GI L +DDFGT  S L+YL     D +K + 
Sbjct: 917  CWLELEVTESTLMEDAEQAVRHLQAFKERGIHLAVDDFGTGYSSLTYLKRFSPDLIKIDR 976

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            + +          AI+ +I+ +A+ +    +A+ +  E  +  L + GCD +Q      P
Sbjct: 977  AFVMNLPDNRDDAAIVSAIVQLAEALGMQTLAEGVESEEQLDFLAQAGCDVVQGYLTGRP 1036

Query: 944  LGFNSILKLLK 954
                 +   L 
Sbjct: 1037 QSAGELTAQLA 1047


>gi|254784772|ref|YP_003072200.1| signal transduction protein, with PAS, HAMP, GGDEF and EAL domainsl
           [Teredinibacter turnerae T7901]
 gi|237686658|gb|ACR13922.1| Predicted signal transduction protein, with PAS, HAMP, GGDEF and
           EAL domainsl [Teredinibacter turnerae T7901]
          Length = 807

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 142/664 (21%), Positives = 291/664 (43%), Gaps = 20/664 (3%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
             L  +      V  +  R ++           + + + G      L+P   L       
Sbjct: 147 FGLVEIYSNNHGVNQAFLRFSITLAFALTIALFVAYFVGGRLVGSSLVPLRDLFNTSQEV 206

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
                     N              +  +     Q +      +  +     R  +    
Sbjct: 207 AASPYANIRANKK--------SNDEIGDLVDVFNQILDTLETDNAALMESESRFRVLAEH 258

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +   ++  +       T      I GL     +     +   I   D   + ++ D    
Sbjct: 259 APIGIFLRNRKLIMEYTNDRWCEITGLTPSQAN----AFTNNIDPKDAALYESVQDKARS 314

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               ++  E+           ++  + P++N  G    ++G   D+TE K +   +   A
Sbjct: 315 QHTPQV-IEYTYTTPQGSRRTLMEHLAPLNNLQG-FQGFVGSLLDVTELKTAQMELEKLA 372

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LT +PNR+ F   L   +  +   D  R  VM+ D+D +KKIND  G   GD +L+
Sbjct: 373 FYDPLTDLPNRRFFRGHLELTIAAAKKYDK-RLAVMMTDLDDFKKINDTFGHDAGDQLLM 431

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+       D+++R+ G+ F +++ + ++S ++   A  + +++   + +  +++ 
Sbjct: 432 QIGKRLKAASASIDVVSRMGGDEFMLLVKNIDSSSQLDHKANNILRALREKMEINGQQVE 491

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
           V  SIG A + +  IT  E+++ A++A+Y+AK  GGN V  +         D++ +++ L
Sbjct: 492 VGGSIGIAVFPNDAITYEELIRYADIALYNAKSMGGNTVSYYSSDLDKRIKDKMRLEQKL 551

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            +A++   L +   PI      E++  EAL++W  P+ G IS   F+ +AEE  +I  + 
Sbjct: 552 RVALDKRLLEVYIQPIYDAATREMIKGEALVRWMDPEEGFISPEVFVSLAEESGLIYDLG 611

Query: 772 LFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +LE++   +     + ++  +  I +N++++    ++L   ++A   +    P +I+ 
Sbjct: 612 SLVLEKVCAYLHEHEGKLHLLGMRTIAVNLSARQFFASQLVTYIEATFKQYQIDPKQIEF 671

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+VM + +++  ++  +R +G SL++DDFGT  S LSYL   P +T+K + S +  
Sbjct: 672 ELTESMVMDDVDQAIDIMRAIRNLGCSLSIDDFGTGYSSLSYLKQFPINTLKIDRSFIKD 731

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +  + I  +II MA N+  T++A+ +  +   + L    CDY+Q  + A P+  + 
Sbjct: 732 IPEDKNDVEIAYTIIAMAHNLGLTVVAEGVETKEQWQLLRDKNCDYLQGYYFARPMPMSD 791

Query: 949 ILKL 952
           +L L
Sbjct: 792 VLML 795


>gi|296386776|ref|ZP_06876275.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           aeruginosa PAb1]
          Length = 760

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           Q +  D  RQ+ AV   + + V   D     V   P    I G  S  + G     L   
Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D+  ++ +  +           E   R    + +   + IR + N  G +  Y+G+ 
Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRAVRNDQGQLTHYVGVF 314

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++  K+S   +   A  D+LTG+PNR    +R+   L+    D  +   +++ID+D +
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ ++ +   +A  +  
Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + I ++AS+G + +         ++++A+ A++ AK  G N    + 
Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     V ++  L  A+++ EL + Y P+  L    IVG+E+L++W HP+ G +  
Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I A++ ++L+R  R +  W+ +      FI +N++S+      L E +
Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FIAVNVSSRLFNRGGLEERI 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +DDFGT  S L  L 
Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G        AI R+I+ +A+++   ++A+ I  +     L   GC
Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGC 731

Query: 933 DYIQDSHVASPLGFNSIL 950
           D+ Q      P    ++ 
Sbjct: 732 DFGQGYWYGRPQPAEALR 749



 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +  AW  +    +   +    +L   +    L        +L+   +++           
Sbjct: 17  IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R + A+    D +WDWD+V DR+  +P  A ++GLA   +  PI  W   +H  
Sbjct: 76  LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +         + +      L + +R+R  D  + W+  R R + ++ G  L Y G+A DI
Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195

Query: 520 TEQKKSLEGILCNA 533
           T Q+   + +   A
Sbjct: 196 TLQRLKEDHLRQAA 209


>gi|30023334|ref|NP_834965.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|218231224|ref|YP_002370076.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|229050972|ref|ZP_04194521.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|229153464|ref|ZP_04281642.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|29898895|gb|AAP12166.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|218159181|gb|ACK59173.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|228630068|gb|EEK86719.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228722349|gb|EEL73745.1| Sensory box/GGDEF [Bacillus cereus AH676]
          Length = 909

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|146284299|ref|YP_001174452.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145572504|gb|ABP81610.1| sensory box protein [Pseudomonas stutzeri A1501]
          Length = 642

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 153/620 (24%), Positives = 277/620 (44%), Gaps = 16/620 (2%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFS 397
               A + I +    L   ++       +   AL   L   ++ +              +
Sbjct: 12  YFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRA 71

Query: 398 QGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
           Q +     ++ +     + + V   D  +  V   P  + I G ++  + G   + +   
Sbjct: 72  QHLQETSLKQAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASG 131

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D   +R +  +      G    E   R  + + +     +R + ++ G +  Y+ +
Sbjct: 132 KH--DATFYRQMWQAL--QEDGVWSGEIWNRRKNGEVYPQWQNLRCIYDNEGQLSHYVAV 187

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D++  K+S E +   A  D L  +PNR  F +R    L+ +  +      +++ID+D 
Sbjct: 188 FSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKR-SGALLLIDLDH 246

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IN+ LG  +GD +L +++ R+ E L+    L RL G+ F ++      + K    A+
Sbjct: 247 FKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYG-AEKATALAL 305

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            +   +  P  L ERE+  +ASIG   +   +      ++++NA+ A++ AK  G +   
Sbjct: 306 RILDRLNEPFRLGERELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYA 365

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +     S    RV +   L  A+E  +L L Y PI  L    I G EAL++W HP+ G 
Sbjct: 366 FYSQELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGSISGFEALVRWQHPEKGL 425

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS + F+ IAEE  +I AI+ ++L++       W  Q   P  FI +NI+S+   + +L 
Sbjct: 426 ISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQ-GRPLGFIAVNISSRLFGNGDLD 484

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  +++ +  +   ++L  +ES VM +P+ +  LL RLR +G+ L +DDFGT  S L 
Sbjct: 485 LQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRTLGVQLAIDDFGTGYSSLQ 544

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +    +K +   + G     +  AI RS+I +A N+   ++A+ I        L  
Sbjct: 545 RLKRMNVHKLKIDQGFVRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLE 604

Query: 930 MGCDYIQDSHVASPLGFNSI 949
             CDY Q    A P   + I
Sbjct: 605 QNCDYGQGYGFARPRPADEI 624


>gi|144899370|emb|CAM76234.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 806

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 149/587 (25%), Positives = 259/587 (44%), Gaps = 12/587 (2%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPD 433
           LV +V L     +          Q    D  R +      + + +         V   P 
Sbjct: 215 LVWLVGLAALVFVTRRTLARLEEQARVEDENRLAEHVFANALEALVVTTGDGTIVRINPA 274

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              + G     + G   N L   H +D D +  +  S +    G  Q E + R  D    
Sbjct: 275 FTRLTGYQPDEVIGHKANVLRSYHHDD-DFYAQMWQSLLS--TGSWQGELKNRRKDGSIF 331

Query: 494 WMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
                I  +          Y+    DIT Q +S + I   A  D LT +PNR  F DRL 
Sbjct: 332 VARENIAALMEPGRDRPRYYVASFTDITAQVESQQHIEHLAHYDPLTDLPNRALFRDRLG 391

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             + L+   +  +  V+ +D+D +KK+ND +G   GD +LV + RR+    +  D + RL
Sbjct: 392 HAVTLANR-ERRKIAVLFLDLDGFKKVNDTIGHRAGDSLLVEVARRLKACTRSSDTICRL 450

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L   +    +   A  +  S+A P  L  RE+ V +SIG +        +  
Sbjct: 451 GGDEFALVLERLDEINDVVPVADKILTSLAAPFVLEGREVYVGSSIGISLHPIDGNDAET 510

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730
           +LK+A+ AMY AK  G    + +           +  +  L  A+++   ++ Y P ++L
Sbjct: 511 LLKHADTAMYQAKAEGKGRYKFYAADMTLRQERRLDMEGALRGAIDSRAFHVYYQPKLQL 570

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              +I G EAL++WDHP  G I   +F+ +AEEL +I  I+L +LE+     +    +  
Sbjct: 571 RGGDIAGFEALVRWDHPSLGLIPPMDFIPLAEELGLITQIDLLVLEQACTMGVQCLARGY 630

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ + +N++S DL + +L   +  ++++T    + + L  +ES  M        +L +
Sbjct: 631 --PVTMAVNLSSLDLKNPDLPTLVAGILAQTGLPANMLVLEITESFAMEAGLGQTSILEQ 688

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908
           L  +G+SL +DDFGT  S LSYL  +P ++VK + S +           ++ +I+ +A +
Sbjct: 689 LTALGVSLAIDDFGTGYSSLSYLKALPVNSVKIDRSFVRDIGTDSRDTMLVSTIVGLAHS 748

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   ++A+ +        L    CD  Q   VA P+  + +   L +
Sbjct: 749 LNLRVVAEGVEDHGQKDLLHHHHCDEAQGYLVARPMPADQVFAFLDQ 795


>gi|189426376|ref|YP_001953553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189422635|gb|ACD97033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 693

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 152/575 (26%), Positives = 267/575 (46%), Gaps = 10/575 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +       Q +    ER  + V    D+V   DI       +P    + G+   
Sbjct: 104 LITLHDISRHKRAEQALRLSEERYRMLVEHQSDLVVRVDIEGRLQFASPSFCMLFGIDEE 163

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G  R   P I+ + +   +  +     + +     E   +  D    W+   ++ + 
Sbjct: 164 QLVG--RELCPIINSSGQAVMKEAMQRLDCHPKSCYH-EICSQTLDG-LRWIGWAMKGVV 219

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G I   +GI  DIT++KK+ + IL  A  D LTG+PNR    DRL+  L L+    N
Sbjct: 220 DEKGHIEAIVGIGRDITDRKKAEQEILQLAHYDTLTGLPNRSLLQDRLSQALSLANR-GN 278

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   V+ +D+D++K +ND  G  +GD +L  ++RR+ + ++  D ++R+ G+ F IIL +
Sbjct: 279 VTLAVLFLDLDRFKHVNDAFGHQIGDLLLQEVSRRLKDCVRATDTVSRIGGDEFVIILTN 338

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                +    A  +  S++    L   E+    SIG A + +       +LK+A++AMY 
Sbjct: 339 LIKCSQAGSIAAKIISSMSRLFQLGGHELYSGTSIGIALYPTDGNDVDTLLKHADMAMYQ 398

Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G    + F          R+ +++ L  A+E+ EL L Y P I      I GLEAL
Sbjct: 399 AKASGRGTFKFFSPEHNEKMLQRMQLEQALRRAIEHQELSLDYQPQIDSATGSINGLEAL 458

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +    F+ IAEE  +I  +  ++L    R   +W+       + I +NI+
Sbjct: 459 LRWQHPQLGLLLPGLFITIAEETGLIIPLGEWVLRTACRQARAWQRA-GYHRLRIAVNIS 517

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L   + A++ +T   P  ++L  +E+ +M +P+ +  LL  L++ GISL +D
Sbjct: 518 PRQFQQRGLIPMIDAILQETGCDPRGLELELTETTLMDSPKEATALLKALKRRGISLAID 577

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS+L + P D +K + S +     + +  AI+ +II MA  +   ++A+ + 
Sbjct: 578 DFGTGYSSLSHLKHFPIDRLKIDRSFVNDLTRSREDSAIVEAIIAMAHRLGLEVVAEGVE 637

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                  L+  GC   Q    +  +       LL 
Sbjct: 638 HPDQHAILSDWGCKTCQGFLYSKAVSTEEATALLA 672


>gi|319650032|ref|ZP_08004181.1| hypothetical protein HMPREF1013_00786 [Bacillus sp. 2_A_57_CT2]
 gi|317398213|gb|EFV78902.1| hypothetical protein HMPREF1013_00786 [Bacillus sp. 2_A_57_CT2]
          Length = 973

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 151/566 (26%), Positives = 263/566 (46%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +        + D V+  D+  +  +  P      G     + G     L 
Sbjct: 410 ALNSSLKMSEQYYKSLFDNNADFVYSTDLKGNFTSINPAFEKTFGFMQDEIIGKTA--LS 467

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           Y+   D    R      +  +         +     + +   ++  P++  NG+ +   G
Sbjct: 468 YVCDADVPRVRMHFYRALRGKEQYYN--VYINTKSGETNLFQLKNIPIT-VNGECVGIYG 524

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  +ITEQKK  E I   AF D  TG+PNR  F ++L   L  +      +  V+ IDID
Sbjct: 525 IGRNITEQKKIEEKITELAFFDRDTGLPNRMKFTEQLEMQLKRARKKQK-KIAVLSIDID 583

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD VL  ++ RI  +L     L R SG++F ++L  E    K+ + +
Sbjct: 584 RFKIINDSLGHFAGDMVLKEISERIERVLPSGSYLGRFSGDKFTLVLSREATIEKVMNVS 643

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   I+ PI+   +E  VTASIG +           +LKNA++A   +K +GGN V  
Sbjct: 644 KKILDEISHPISQSNQEFIVTASIGASLHPDDGADEHLLLKNADIATNRSKQQGGNRVTF 703

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F +        R+ ++  L  A+  +E +L Y P+I L    + G EALI+W+HPK G +
Sbjct: 704 FSMEMNQQAMVRLELESYLRKALLKNEFFLCYQPLIDLDTGNLYGSEALIRWNHPKLGLV 763

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE  +IK I  ++L    +    W+       + I +N+++         +
Sbjct: 764 SPGEFIPLAEETGLIKDIGGWVLRSACKQNKRWQ-MLGYKSLSISVNVSAYQFQQPGFLQ 822

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  +  +   P  + L  +ES ++ N E S  ++  L+ IG+ +++DDFGT  S LSY
Sbjct: 823 EVKMALELSGMEPQYLTLELTESTMLRNVEHSIQVMQSLQNIGVKVSIDDFGTGYSSLSY 882

Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P +T+K + S +         +AI+++II M   +   ++A+ +  +  I+ L  +
Sbjct: 883 LKDLPINTLKIDRSFINNLRLNTSDVAIVKAIITMGHGLAVKVVAEGVETQEQIELLKEL 942

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            C Y Q  ++  PL  +   + L + 
Sbjct: 943 KCHYAQGFYIHKPLMTSEFEEGLSKY 968


>gi|89092665|ref|ZP_01165618.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
 gi|89083177|gb|EAR62396.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
          Length = 885

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 148/565 (26%), Positives = 269/565 (47%), Gaps = 16/565 (2%)

Query: 401 FSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--Y 455
               ER    S AV  S   V   ++  +         ++ G +   + G   + L    
Sbjct: 325 RKAEERILTLSQAVEQSPVSVVITNLKGEVEYVNSTFESVTGYSQAEVLGKDSSILKSGK 384

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                   +  +    V       Q EF+ +  + +  W    I P+ ++ G++  ++ +
Sbjct: 385 TPP---GRYADMWAKLVQGE--SWQGEFQNKKKNGEIFWEQAHIAPVLDAEGEVRHFLAV 439

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+T+QK   E IL  A  D LT +PNR   + RL T++  +  + + +  V+ +D+D 
Sbjct: 440 KQDVTKQKAQEEKILHQAHFDGLTELPNRFLAMHRLETMMHEAKRNQH-QIAVLFLDMDD 498

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KK+ND LG  +GD +LV   +R+   ++  D + RL G+ F +++       +    A 
Sbjct: 499 FKKVNDTLGHDMGDKILVEAAKRLQGSVRDSDTIGRLGGDEFIVLINHLERPEQALPIAQ 558

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + +     + +  R+I +T SIG A +     T SE+L+NA+ AMYH+K  G N    +
Sbjct: 559 NLLQQFRSSLTIDGRDILLTMSIGIALYPGDGTTPSELLRNADSAMYHSKAAGRNSFHFY 618

Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   + R+ ++E L  A++ +EL L+Y P++ L   +IVG EAL++WD  + G IS
Sbjct: 619 TQEMNIEANRRLQLEEQLHNALDRNELRLLYQPVVDLKTRKIVGAEALLRWDSKELGAIS 678

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE   +I  I  F+L+   R    W      P   I IN++ +   D  L + 
Sbjct: 679 PEEFIPVAEHTGLIVEIGKFVLDDALRTTSRWIKTFI-PDFHIAINLSPRQFRDPHLIDN 737

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +++ ++        ++L  +E V+M         + +L + GIS+++DDFGT  S LSYL
Sbjct: 738 IESFVNSYGLEGRNLELEITEGVLMSQHADVEEAIAKLTQKGISISMDDFGTGYSSLSYL 797

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PF+ +K + S +   +     + ++ + I MA  +   +IA+ +  E     L R  
Sbjct: 798 RSYPFNILKVDRSFINDISVDAADLELVNASIDMAHGLGLKVIAEGVETEEQTALLLRKN 857

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD  Q  + + P+  + + ++LK++
Sbjct: 858 CDMAQGYYFSKPIPADELEEILKKQ 882



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 106/332 (31%), Gaps = 28/332 (8%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA 280
              +  + + Y S+    + +   L  G   I      +A+  +    +       RW  
Sbjct: 13  VALLLAMGIVYDSLGLQNIHQRF-LREGITGILVGLLGMAVMLTPWELIPGVFFDARW-- 69

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
            +  +       I  L  +     +              +     +I  G + Y      
Sbjct: 70  VLISLCGLYFGVIPTLIAVVMTVTLRLYQGGAGIYVGSAVIICSALIGLGWRAYIEKHNK 129

Query: 341 IPAWILIFIWFIGLWMAIT---------------KRLDNDIIQPALVGGLVLIVILIGFT 385
              W  ++   + + + +                  +   I+    +G ++L +IL    
Sbjct: 130 ALTWWRLYFLGLSVQITVLCLMFFMPEHLRYKIIAAIAPTILIFYPIGTMLLGMILSRQE 189

Query: 386 VIQHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +      + S+ I +  ER      +    D ++  D     +       +  G    
Sbjct: 190 ERRLAERELHISRQILNR-ERGLLRGLIDALPDHIFIKDKEGKYLGCNKAFQSFTGHQEA 248

Query: 444 SMHGPIR-NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            + G    ++    H I D+ +   ++++ +   R    +E      D     +  ++ P
Sbjct: 249 DLIGKTDQDFSESNHAITDKSDTLQVINNLLPINREAWTHE-----QDGSPILLESQLAP 303

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             + +G+    +GI+ DITE++K+ E IL  +
Sbjct: 304 FLDMDGEPQGIVGISRDITEKRKAEERILTLS 335


>gi|228942448|ref|ZP_04104985.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975380|ref|ZP_04135936.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982017|ref|ZP_04142310.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228777681|gb|EEM25955.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228784362|gb|EEM32385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817190|gb|EEM63278.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 885

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 28  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 85  L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 138

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 139 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 198

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 199 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 258

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 259 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 318

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 319 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 377 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 433

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKK-PFAVMFL 492

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 552

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 553 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 613 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 672

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 673 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 731

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 732 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 791

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 792 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 852 QKHKCKYMQGYYFSKPLTSNQFIKFLQK 879


>gi|170727840|ref|YP_001761866.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169813187|gb|ACA87771.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 1012

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 139/556 (25%), Positives = 242/556 (43%), Gaps = 12/556 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                 +     S + +   D   + +T       I G     +     + L     +  
Sbjct: 449 ESLNLAASVYNNSSEAMSVQDKEGNIITINSAFTEITGYREDEIINQHISILQC---DSS 505

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +         GR   E  ++      H + + I  + ++ G++ R + + +DITE
Sbjct: 506 SKKTFVQMRSTIEETGRWNGEIWLKHKRGSEHIVRLTINTILDNRGEVYRRVALFSDITE 565

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++   I   A  D LT +PNR+  L+ L T L  S         +M +D+D +K++ND
Sbjct: 566 KKQAEHIIWKQANYDPLTSLPNRRMLLEYLGTELLKSDRSKQ-HFALMFLDLDFFKEVND 624

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  +GD +LV   +R+   ++  D++ARL G+ F ++L S  +   +   A  +   +
Sbjct: 625 ALGHDIGDLLLVETAKRLKGCIRESDVVARLGGDEFTVVLSSIADHKGVERVAEKILARL 684

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P +L      ++ASIG   +     T   +LK+A+ AMY AK  G N    F  S   
Sbjct: 685 SEPFSLGSETAYISASIGITLYPDDAQTIDSLLKHADQAMYAAKGLGRNRYHYFTPSMQE 744

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+++  DL  A+   E  + + PI+ +   +++  EALI+W HP+ G I  SEF+ 
Sbjct: 745 YAKYRMLLIGDLRKAITKQEFEVYFQPIVDMNTMKVLKAEALIRWHHPERGIIPPSEFIP 804

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQAL 817
           +AEE  +I  I  ++ E  A+    WR+Q  +  I I IN +     D        ++  
Sbjct: 805 VAEETGLIVDIGNWVFEEAAKQSAYWREQYGVE-IQISINKSPVQFRDERGCFESWIKR- 862

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       I +  +E +++         L   R  GI ++LDDFGT  S LSYL    
Sbjct: 863 LKELKLDSHGICIEITEGLLLDVDSGVSEKLLAYRDAGIQVSLDDFGTGYSSLSYLKKFD 922

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S             +  +II MA  +   +IA+ +  +  +  L   GCDY 
Sbjct: 923 IDYLKIDQSFTQNLASDSDDQTLCEAIIVMAHKLGMKVIAEGVETQFQLATLVEAGCDYG 982

Query: 936 QDSHVASPLGFNSILK 951
           Q    + P+   +  +
Sbjct: 983 QGYLFSKPIPAKAFEE 998



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 2/154 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+  + +  + +       + +  E+ +L +  S   +WDWDI  ++V      A++LG 
Sbjct: 302 LLVISGLLDITSQKLAESAMCASQEQLALVLDSSELGLWDWDIKSNKVERNTRCASLLGC 361

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   ++   R W+  IH +DR +    +D+ +         E+R+     +  W+    +
Sbjct: 362 SVEELNRDERVWINAIHRSDRVDVLHSIDAHLKGETSHHSIEYRLNTFSGETIWIQDSGK 421

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +  +  G  +R  G   DIT +K+  E  L  A
Sbjct: 422 VVSKDEQGSPVRMCGTHMDITARKR-GEESLNLA 454



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 77/326 (23%), Gaps = 29/326 (8%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF----------M 271
                V    + +   F+   V     +  ++     +      I               
Sbjct: 1   MIFTLVQNTALLLAMVFIYDAVPRKQRDEYLFLWQLSVGAIIGGITMTSVMASWEYSQGQ 60

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           Y         +  + F G+  +  +F  S +            +  +V       ++   
Sbjct: 61  YFDARSVILGISGVFFGGLPTLIAVFLASIFSFYEGGVGVWFEIGMMVSAGLLGCLWRYY 120

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
               RAV+ I          I   + +                 V    LI + V     
Sbjct: 121 CH--RAVVDISNIQFYSFGMILQCITLLWLFILPFEMAVNTLNSVAFPTLIIYPV---AF 175

Query: 392 ATGYFSQGIFSDGER-----------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
                      + ER                      +    + +  +   P +  +L  
Sbjct: 176 LLLSSLLARRLEMERDANIQLQDDLIFRSQFNIGNIGIAISSVDQHWIKVNPRVCQMLKY 235

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   +      W    +  D        D  +       + + R  A DN   +  + + 
Sbjct: 236 SEKELLAMK--WSDMTYFEDLQTGLNQFDRMLKGEIDEYEMDMRFVAKDNSIVYTHLTVA 293

Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526
                N  +L  I    DIT QK + 
Sbjct: 294 CQR-KNNKVLLVISGLLDITSQKLAE 318


>gi|327482683|gb|AEA85993.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 642

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 152/620 (24%), Positives = 277/620 (44%), Gaps = 16/620 (2%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFS 397
               A + I +    L   ++       +   AL   L   ++ +              +
Sbjct: 12  YFCLAMLWILLGDTLLGQLVSGDGQAWQMGKGALFVTLTSALLFVLGRRHVRRFDEQQRA 71

Query: 398 QGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
           Q +     ++ +     + + V   D  +  V   P  + I G ++  + G   + +   
Sbjct: 72  QHLQETSLKQAAAVFDSTQEGVLVTDPQQHIVHVNPAFSRITGYSTEEVLGQTPKLFASG 131

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D   +R +  +      G    E   R  + + +     +R + ++ G +  Y+ +
Sbjct: 132 KH--DAAFYRQMWQAL--QEDGVWSGEIWNRRKNGEVYPQWQNLRCIYDNEGQLSHYVAV 187

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D++  K+S E +   A  D L  +PNR  F +R    L+ +  +      +++ID+D 
Sbjct: 188 FSDLSALKRSREELDQLAHFDPLVNLPNRLLFTERAKQDLERARANKR-SGALLLIDLDH 246

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IN+ LG  +GD +L +++ R+ E L+    L RL G+ F ++      + K    A+
Sbjct: 247 FKDINESLGHNLGDTLLQAVSARLSEQLESGMTLGRLGGDEFALLCEDYG-AEKATALAL 305

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            +   +  P  L ERE+  +ASIG   +   +      ++++NA+ A++ AK  G +   
Sbjct: 306 RILDRLNEPFRLGERELFSSASIGIVLYPYPTDVQNVEQLMRNADSALFKAKSSGRSTYA 365

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +     S    RV +   L  A+E  +L + Y PI  L    I G EAL++W HP+ G 
Sbjct: 366 FYSQELTSQARQRVELVTALRQALEQGQLRMDYQPIYDLRQGSISGFEALVRWQHPEKGL 425

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS + F+ IAEE  +I AI+ ++L++       W  Q   P  FI +NI+S+   + +L 
Sbjct: 426 ISPAVFIPIAEETGLISAIDHWVLQQACHQAREWLGQ-GRPLGFIAVNISSRLFGNGDLD 484

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  +++ +  +   ++L  +ES VM +P+ +  LL RLR +G+ L +DDFGT  S L 
Sbjct: 485 LQIATVLASSGLAARHLELEITESAVMQDPDGALELLQRLRALGVQLAIDDFGTGYSSLQ 544

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +    +K +   + G     +  AI RS+I +A N+   ++A+ I        L  
Sbjct: 545 RLKRMNVHKLKIDQGFVRGLPADREDAAITRSVIGLAHNLGLKVVAEGIEIADQAAFLLE 604

Query: 930 MGCDYIQDSHVASPLGFNSI 949
             CDY Q    A P   + I
Sbjct: 605 QNCDYGQGYGFARPRPADEI 624


>gi|309779272|ref|ZP_07674034.1| sensory box protein/response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921830|gb|EFP67465.1| sensory box protein/response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 864

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 139/560 (24%), Positives = 254/560 (45%), Gaps = 10/560 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +  + +        +  S D +  +D    R+   P    + G +     G   + LP  
Sbjct: 295 TAELVTRERESRTLIENSPDTIARYDRESRRIYANPAFCALAGCSLTEALGKRPSELPG- 353

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D       + S V       Q+E R    D Q     +R+ P ++  G++   + + 
Sbjct: 354 --GDNARVYEKIISDVISSGTSAQFELRWAGKDGQEQCSHVRLTPETDQAGNVHSVLAVG 411

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D++++      I   A  D LTG+PNRQ F +RL             R  +M+ID+D++
Sbjct: 412 RDLSDRMAFEATIWKQANFDALTGLPNRQMFHERLAQEASEPGRIGR-RMALMLIDLDRF 470

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND LG   GD +L+   +RIG  ++  D +ARL G+ F +IL + +++  +   A  
Sbjct: 471 KEVNDSLGHDRGDTLLIEAGKRIGSCVRQSDTVARLGGDEFTVILPNVDDAESVERIART 530

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +A P  L   E  ++AS+G   +         + KNA+ AMY AK+ G N    F+
Sbjct: 531 IIGKLAEPFKLGADEAFISASVGVTFYPDDAHDLDVLFKNADQAMYAAKNAGRNRFSYFK 590

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    R+ +  DL  A+ + +  + Y PI+ L   E+   EALI+W HP+ G IS 
Sbjct: 591 PDMQVEAEQRLRLTSDLRTALPSGQFQVYYQPIVELATGEVCKAEALIRWLHPERGTISP 650

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEG 813
            +F+ +AE+  +I  I  ++ ++  R    WRD+ + P   I +N++   +  +  LC  
Sbjct: 651 HDFISVAEDTGLIVPIGDWVFKQAVRQARQWRDRFH-PSFQISVNMSPVQMRQDGQLCAR 709

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
               +++       + +  +E +++    R+   L  LR  GI +++DDFGT  S L+YL
Sbjct: 710 WPDFLAREGLPAQSVMVEITEGLLLQAESRTDETLLTLRSAGIGISIDDFGTGYSSLAYL 769

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K + S +      E   A+  +++ +A  +   +IA+ +        L  + 
Sbjct: 770 KRFDIDYLKIDRSFVHNLSFDEDNQALCEAMVVLAHKLGLKVIAEGVETAEQRDFLKAVD 829

Query: 932 CDYIQDSHVASPLGFNSILK 951
           CD+ Q    ++P+  +   +
Sbjct: 830 CDFAQGFLYSTPVPPHEFER 849


>gi|254243382|ref|ZP_04936704.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196760|gb|EAZ60823.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 760

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/558 (25%), Positives = 268/558 (48%), Gaps = 11/558 (1%)

Query: 398 QGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           Q +  D  RQ+ AV   + + V   D     V   P    I G  S  + G     L   
Sbjct: 198 QRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRS- 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D+  ++ +  +           E   R    + +   + IR + N  G +  Y+G+ 
Sbjct: 257 GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRVVRNDQGQLTHYVGVF 314

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++  K+S   +   A  D+LTG+PNR    +R+   L+    D  +   +++ID+D +
Sbjct: 315 SDLSSIKRSENELDFLAHHDSLTGLPNRVLLRERIEQALENGK-DRTVAGALLLIDLDHF 373

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ ++ +   +A  +  
Sbjct: 374 KHINDSLGHTTGDMLLKEVSKRLQHQLDERCLLSRLGGDEFAILVEND-DPEAVARLSQR 432

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + I ++AS+G + +         ++++A+ A++ AK  G N    + 
Sbjct: 433 ILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYT 492

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     V ++  L  A+++ EL + Y P+  L    IVG+E+L++W HP+ G +  
Sbjct: 493 RVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPP 552

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I A++ ++L+R  R +  W+ +      F+ +N++S+      L E +
Sbjct: 553 GEFVPVAEECGLIAALDNWVLKRACRQMREWQQRGVELE-FVAVNVSSRLFNRGGLEERI 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +DDFGT  S L  L 
Sbjct: 612 ANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLK 671

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G        AI R+I+ +A++I   ++A+ I  +     L   GC
Sbjct: 672 RLPVHKLKIDQGFVAGLPGAVDDAAIARAIVALAQSIGLRVVAEGIEHQDQALFLREHGC 731

Query: 933 DYIQDSHVASPLGFNSIL 950
           D+ Q      P    ++ 
Sbjct: 732 DFGQGYWYGRPQPAEALR 749



 Score =  140 bits (354), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +  AW  +    +   +    +L   +    L        +L+   +++           
Sbjct: 17  IAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAAT-GLLLYLYLVRQFRRKAQAYDE 75

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R + A+    D +WDWD+V DR+  +P  A ++GLA   +  PI  W   +H  
Sbjct: 76  LHGSEQRLNRALEAVRDGLWDWDLVTDRMFVSPGYAALIGLAPEELGDPIETWKKRLHPE 135

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +         + +      L + +R+R  D  + W+  R R + ++ G  L Y G+A DI
Sbjct: 136 EYATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDI 195

Query: 520 TEQKKSLEGILCNA 533
           T Q+   + +   A
Sbjct: 196 TLQRLKEDHLRQAA 209


>gi|229112714|ref|ZP_04242248.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|229147842|ref|ZP_04276183.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228635492|gb|EEK91981.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228670736|gb|EEL26046.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
          Length = 909

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVLM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|311697006|gb|ADP99879.1| sensory box/GGDEF/EAL family protein [marine bacterium HP15]
          Length = 811

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 262/574 (45%), Gaps = 12/574 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + +A       I  D  RQ+  V  S  + V   D+    +      + I G      
Sbjct: 239 LIYAVAIDVTEARIADDKLRQAATVFQSTVEGVMISDLDNRIIEVNDAFSQITGYTEEEA 298

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   + L     +D   F  I  S      G  + E   R  D      ++ I  + N 
Sbjct: 299 IGKTPDLLDS-GKHDPSFFNAIWQSVREN--GHWRGEIWSRRKDGSVFPELLTISTILNK 355

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           + + + Y+ + +DI+  K   E +   A  D LTG+PNR  F  RL   + LS       
Sbjct: 356 D-EPVGYVTVFSDISTLKAHQEKLDYLAHHDPLTGLPNRLLFNSRLQQSIRLSERTGR-S 413

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ IDID++K IND +G   GD++L  +  R+ E L+  D  ARL G+ F ++L    
Sbjct: 414 IAVLFIDIDRFKNINDSMGHPTGDELLKHVAARLREQLRASDTAARLGGDEFVVLLEDIE 473

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            +      A  + K+      +   EI VT S+G + +      ++E+L +A+ AMY AK
Sbjct: 474 GAEHAGQVADTLMKAFKETFAMDGVEIGVTVSMGISLFPQDSNDAAELLADADAAMYQAK 533

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +   S     + V  +  L  AV +++L+L Y P   L   ++ G+EALI+
Sbjct: 534 ENGRNTYAFYSSESTARALEYVFFENALRRAVSDNQLFLEYQPQFDLEPGKLTGMEALIR 593

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G I+   F+ IAE+   I+ I  ++L+       +W D        I IN+A+ 
Sbjct: 594 WQHPDKGLITPDRFIPIAEQNGTIRNIGQWVLQTACHQGKAWLDAGLDIG-RISINVAAS 652

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D      + A++ ++   P  ++L  +ES  M  PER+   L  LR+  I++ +DDF
Sbjct: 653 QFHDENFLAEVLAIVDESGLPPEHLELELTESSFMHQPERAIPKLHALRERNITIAIDDF 712

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D +K + S +      E+  AI+R+II + K ++   IA+ +  E
Sbjct: 713 GTGFSSLSYLKRLPIDKLKIDRSFVMDLPDDEEDKAIVRAIIGLGKTLKLKTIAEGVETE 772

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +    +  CD  Q  + + PLG +++   L+ 
Sbjct: 773 AQVAFFKQAKCD-AQGFYFSRPLGTDAMDAFLRS 805



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     V       T LG     + G    ++ ++H  DR+   +     +    G  ++
Sbjct: 156 DFEGKFVRVNGLWETKLGYRRDELEG--EVFIEFVHPEDREKTLSEAGRVIENSEGSSEF 213

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           E R R  D  + W+      +++    ++  + I  D+TE + + + +   A 
Sbjct: 214 ENRYRHKDGFYRWLSWSS--VTSPEAGLIYAVAI--DVTEARIADDKLRQAAT 262



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 8/130 (6%)

Query: 412 LGSGDIVWDW----DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            G    ++ +    D        +     +  + +  +          I   D +     
Sbjct: 22  DGIPGAIFQYILHPDGTDQLSYISRGCVDLWEIEAAELKRDPGPLWEMILPEDVEGLARS 81

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +           ++E+R++ A     W+     P    NGDI  +  +  D+T ++++ E
Sbjct: 82  IRGSAETMT-FWRHEWRIKPASGVVKWLSGTGTPKQRENGDIC-WNSVIIDVTRERQTQE 139

Query: 528 GILCNAFQDN 537
               ++F D 
Sbjct: 140 --ALDSFFDQ 147


>gi|269964567|ref|ZP_06178806.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B]
 gi|269830694|gb|EEZ84914.1| hypothetical protein VMC_02360 [Vibrio alginolyticus 40B]
          Length = 815

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 148/554 (26%), Positives = 258/554 (46%), Gaps = 13/554 (2%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +        I G  S  + G     L   H +   
Sbjct: 267 QLSLASQIFNNSQEGMVITDRNANIIDVNTAFTQITGYRSEEVIGKNPRILRSGHHD--Q 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 GFYQQLWHQLENK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   L  L   ++            + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKSQQT-FATLFLDIDHFKHINDS 442

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F IIL   ++ + + +    +     
Sbjct: 443 MGHFCGDQLLSKLAIRLQDVLHLNAHVARIGGDEFVIILPDIHSDVALLETVGDILSVFQ 502

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + V+ SIG A +      S  +LKNA+ AMY AK  G N    +      
Sbjct: 503 QPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L L + P   L    IVG+EAL++W HP++G +  ++F+ 
Sbjct: 563 KSVSHVRIQSALHQAIEKQQLRLEFQPQYNLEQNTIVGVEALLRWQHPEFGLVPPADFIP 622

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++L++      +W DQ       I +N+++  L  +   + ++ ++ 
Sbjct: 623 IAEKTGLIQSIGEWVLQQACLQGNAWLDQGIEFG-KIAVNVSALQLQQSNFIQRLRTILD 681

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T Y   R+ L  +ES ++ +P+++   L +LR++GI ++LDDFGT  S LSYL  +P +
Sbjct: 682 NTGYPAQRLDLEITESFLLIDPQQAIASLNQLRELGIEISLDDFGTGYSSLSYLKGLPIN 741

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   S     AI+ +II M K +   ++A+ I        L   GC Y Q 
Sbjct: 742 KLKIDRSFVSDVPSNSDSNAIVNAIIAMGKTLSLKVVAEGIETREQADYLFEKGCIYGQG 801

Query: 938 SHVASPLGFNSILK 951
              + P+    + +
Sbjct: 802 YLFSQPVSAEKLFR 815



 Score = 45.3 bits (106), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 7/187 (3%)

Query: 350 WFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
             +   + +T     + ++   L      I   I     Q                +   
Sbjct: 93  GELLAVLTLTHPNDQSTVVSAWLSAIAGRISFDINLHCQQEQTRHQSAEIKPTPTLQEFI 152

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +    D VW   +      T   +       +  + G   +          + F    
Sbjct: 153 DCLE---DHVWIKGMDGLYSMTNRSVENAWQKTNSEIIGK--DDFALFSHERAEKFIDAD 207

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              V      +  E R    +N   W+     P+ +  G+++  +G+  +IT ++K +E 
Sbjct: 208 KLVVATGTQNIVEECRQIDENNNPTWLETIKSPVRDHAGNLIGILGMTRNIT-RRKMVET 266

Query: 529 ILCNAFQ 535
            L  A Q
Sbjct: 267 QLSLASQ 273


>gi|297568270|ref|YP_003689614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924185|gb|ADH84995.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 979

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 149/578 (25%), Positives = 269/578 (46%), Gaps = 15/578 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  +         + +  +R  L   A+  S D +   D+    V   P   TI G    
Sbjct: 268 VARLAQLQREQAALRASEQRHRLLAAALDASRDGMVITDLKGKIVAINPAFTTITGYCQD 327

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              G   R      H  DR  ++ +  S    + G  Q E   R  + + +  ++ I  +
Sbjct: 328 EALGKNPRILQSGRH--DRAFYQAMWASLK--KNGHWQGEVWNRRKNGEIYPELLSISTV 383

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G    Y+G+  D+T  ++S E +   A  D LTG+PNR     RL   L+ +  + 
Sbjct: 384 YDDGGQPAYYVGVKTDLTSLRRSEEQLQYLAHHDPLTGLPNRLLLEARLEHGLERARREG 443

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  VMVI++D+++ IND LG A GD +L  +++R+ + ++  D LARL+G+ F ++L 
Sbjct: 444 G-KLAVMVINLDRFRTINDSLGYAAGDRLLEEISQRLRDCVRAEDTLARLAGDEFALVLE 502

Query: 623 SENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
             ++  +       +++++  P  L  E E  +  SIG + +     T   +L+ A++A+
Sbjct: 503 MIHDYREAEIMGRRLQQALDEPFTLPDEYEAFMHLSIGISVYPQDGDTVDILLRGADIAV 562

Query: 682 YHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             AK  GG  V      ++S     + ++  L  A E  E  L Y P + L    +VG+E
Sbjct: 563 GLAKEGGGGQVFYTSADLNSQARRTLELEGALRRAQEQGEFLLYYQPKVDLHSGRVVGVE 622

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W  P  G +S  EF+ +AE   +I  +  +++    R I +WR+      + + +N
Sbjct: 623 ALLRWRRPGHGLVSPGEFIPVAERSGLIADLGTWVIHEACRQIQAWREAGLGE-VRVAVN 681

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++     +L E +   +         + L  +ES++M NPE +   +  L+++G+ L 
Sbjct: 682 VSARQFNHGDLKEILAGALKTHDVKGELLTLELTESMLMLNPEEAITRMATLKELGVKLA 741

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S  S L   P D +K + S + G         I  SII MA  +   ++A+ 
Sbjct: 742 LDDFGTGFSSFSSLSRFPIDQLKIDRSFVAGLAVEADASTIAVSIIAMAHRMGLKVVAEG 801

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  E+    L + GC+ +Q    + PL    + +LL++
Sbjct: 802 VETEVQSGYLRQNGCEEMQGFLFSKPLPAEELAELLRQ 839


>gi|91782791|ref|YP_557997.1| putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Burkholderia xenovorans
           LB400]
 gi|91686745|gb|ABE29945.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Burkholderia xenovorans
           LB400]
          Length = 929

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 150/578 (25%), Positives = 258/578 (44%), Gaps = 14/578 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           + +      ++ +    E+       +    +W W          P +    G       
Sbjct: 331 RAIRLASGMTRELRESEEKFRAIADCTVNLEIW-WGPDGKPRWINPSVDHYTGYTVAECM 389

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    IH +D +         +   RG    EFR    D    W+ +   P+SN+ 
Sbjct: 390 AMPNFARTLIHPDDVERVAPEFQKGLQGFRGD-DLEFRCVRKDGSLLWLSLSWVPISNAR 448

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           GD + +     DITE+KKS E I   AF D LT +PNR   LDRL   +  ++ ++N+  
Sbjct: 449 GDFVGFRTSGRDITERKKSEEKIRELAFYDTLTRLPNRALLLDRLRESMA-ASRENNVCG 507

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN- 625
            +M ID+D +K +ND LG   GD +L  +  R+   +   D +AR+ G+ F ++L + + 
Sbjct: 508 ALMFIDLDHFKTLNDTLGHDKGDLLLRHVAYRLSSSVSKGDTVARVGGDEFVVVLGNLSL 567

Query: 626 ----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                + +       +   +     L   +   TASIG   +   + ++ E+ K A+LAM
Sbjct: 568 NKAAATAETEAAGEKILAVLGRAYELNGVQFRSTASIGVTVFNGEQTSTDELFKQADLAM 627

Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y +K RG N +  F  +   +   R  ++  L  A+E +   L Y   + +  + I G E
Sbjct: 628 YKSKERGRNAMCFFDPAMQTTVLKRAELEVGLRSAIEENRFVLHYQAQV-VDGDHITGAE 686

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G I  +EF+ +AEE  +I  I   +LE     +  W  +  M  + I +N
Sbjct: 687 ALVRWEHPVCGLIPPAEFIPLAEETGLILEIGRMVLESACAQLALWATEPQMAHLSIAVN 746

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++   + +  E +  +I++      R+KL  +ESV++ N E     +G LR  G++ +
Sbjct: 747 VSARQFREPDFVESVLGVINRKGARADRLKLELTESVLVENVEDIIEKMGALRARGVTFS 806

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFG   S LSYL  +P D +K + S +           I R+I+ +A++ +  +IA+ 
Sbjct: 807 LDDFGIGYSSLSYLKRLPLDQLKIDRSFVRDILEDPNDADIARTIVALARSFDLGVIAEG 866

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  E     L   GC   Q      PL   S  + +  
Sbjct: 867 VETEAQRDFLAVAGCHAYQGFLFCKPLPVRSFEQFVAS 904


>gi|241765653|ref|ZP_04763605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax delafieldii 2AN]
 gi|241364500|gb|EER59589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax delafieldii 2AN]
          Length = 1624

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 145/585 (24%), Positives = 255/585 (43%), Gaps = 17/585 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             +     I    A+    + +     R Q+  +  + D +   D+    +        + 
Sbjct: 1043 FVTSTLQIFATRASAEIDRQLADMRIRHQASLLDKAQDAIIVRDLDHRIIYWNKSAERLY 1102

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            G +     G     +  +  +D   FR    + V    G    E   R  D     +  R
Sbjct: 1103 GWSQLQALGQS---IETLLYDDPAQFRRATQTTVEQ--GEWTGEIVQRHRDGSPIDVEGR 1157

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
               + +  G     + I  DI E+K +   I   AF D LTG+PNR   +DR+   L  +
Sbjct: 1158 WTLVKDDAGRAHSVLAINTDIRERKATEREIQRLAFYDPLTGLPNRMLLMDRIGQALATA 1217

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                     ++ ID+D +K +ND LG   GD +L  +  R+   ++  D +ARL G+ F 
Sbjct: 1218 QRRHQG-GALLFIDLDNFKTLNDTLGHDQGDLLLQQVAHRLNNCVRSVDTVARLGGDEFV 1276

Query: 619  IILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L   +                +   +A+P  L   +   T SIG A +   + T  E+
Sbjct: 1277 VMLEELSPQPDELALDARAVGEKVLAMLAVPYALKGYQYRSTPSIGIAPFDGDQATVGEL 1336

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731
            LK A+LAMY AK  G N +  F  +          ++ED   A+ N E  L Y P + L 
Sbjct: 1337 LKQADLAMYQAKTAGRNTLRFFDPAMQDVVTARAALEEDFRTALANDEFLLHYQPQVNLA 1396

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              + VG+EAL++W HP+ G +S +EF+ +AEE  +I ++  ++L      +  W+D   +
Sbjct: 1397 -GQCVGVEALVRWAHPQRGLVSPAEFIPLAEETGLILSLGRWVLHTACTQLALWQDDPML 1455

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
              + + +N++S+        + +  +++ T      +KL  +ES+++ + E +   +  L
Sbjct: 1456 SELTMAVNVSSRQFRHASFVDDVARVLAITGAPSGLLKLELTESLLVEDMETTIATMAAL 1515

Query: 852  RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
               G+  +LDDFGT  S LSYL  +P D +K + S +          AI+ +II +++++
Sbjct: 1516 GAYGVGFSLDDFGTGYSSLSYLKRMPLDQLKIDQSFVRDLLTDPNDAAIVDTIIGLSRSL 1575

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               +IA+ +        L R GC   Q    + PL   S+   L+
Sbjct: 1576 GLEVIAEGVETPEQRDLLARAGCHLYQGYLFSRPLSAGSLEAFLR 1620



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 60/149 (40%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              Q + A     Q +    ER  L    + D +WDW++  D +     +  + G+  G 
Sbjct: 292 GAFQDITAHHQADQALRISEERFHLVARATADAIWDWNLATDAMWWNEGMQHLFGIPPGE 351

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +    R+W   +H  +       + + +         E+R R  D+ + W++ R   + +
Sbjct: 352 LLPDSRSWTLRLHPEESAALLQSIQAAIEGNDTHWTAEYRFRRRDDSYAWVLDRGFLIRD 411

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533
           + G  +R +G   DI+ QK +      +A
Sbjct: 412 AQGRAVRMVGGITDISAQKLAEIEAGRDA 440



 Score = 81.9 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 16/296 (5%)

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
           +  +     E    +  +  A   +  + +  +L  +R   K           +A+  C 
Sbjct: 18  AYAILDTPPEASFDQLATLAARLCNTPMAVVNFLDRDRQWFKAAVGVPFRQTELAVALCA 77

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           +         IA       +   +  +      G     L     ++    F+   +A+ 
Sbjct: 78  NALRGGREPLIAADARTHPLFASSPLVT-----GKPHIRLYACVPLVTPEGFVLGTLAVL 132

Query: 360 KRLDNDIIQPALVGGLVLI---VILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAV 411
             +   +    + G  +L    ++L+     Q +L             +   GE   +A 
Sbjct: 133 DTVPRMLTSEQVEGLKMLASQAMVLLELRRQQRLLSELVQERDRMHAELMDQGETLRVAG 192

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +    W  ++   R+T + +I T  GL   S  G +   L       R      L   
Sbjct: 193 RIARIGGWTLELPGRRLTWSQEIVTTFGLPGRS--GTLDEILALYAPPYRARLEKALADC 250

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  R      +  V+  D ++ W+      + +  G ++R  G   DIT   ++ +
Sbjct: 251 I-GRGTPFDLQAEVQMPDGRYFWVRTAGLAVHDEQGRVVRVQGAFQDITAHHQADQ 305


>gi|117925510|ref|YP_866127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Magnetococcus sp. MC-1]
 gi|117609266|gb|ABK44721.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Magnetococcus sp. MC-1]
          Length = 971

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 136/555 (24%), Positives = 267/555 (48%), Gaps = 12/555 (2%)

Query: 406 RQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDN 463
           R +  +   + + +             P  + I G     + G   + L    H  D   
Sbjct: 410 RLAQVLFRTTNEALMISSRDNKIEMVNPAFSRITGYQLDEVLGKGPDLLQSGRH--DAPF 467

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           +  +  +    + G  + E   R    + +   + I  ++N  G+ ++Y+   +DIT++K
Sbjct: 468 YTQMWHAL--QQDGAWEGEIWNRRKSGETYPEWLSIATVTNDKGETVQYVAAFSDITKRK 525

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E IL  A  D LT +PNR  F DRL T L  S      +  ++ ID+D++K +ND L
Sbjct: 526 QAEETILHQANYDFLTDLPNRNLFHDRLQTELKRSQRSGQ-QVALLFIDLDRFKFVNDTL 584

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +  R+G  ++  D +ARL G+ F +IL   +    +A  A  M   +  
Sbjct: 585 GHNVGDQLLREVAIRLGHCVRESDTIARLGGDEFTVILPELHGPEGVARLAQGMIDKLEE 644

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
              + + E+ ++ASIG   +        +++KNA++AMY AK  G      +   +++  
Sbjct: 645 RYCIQDHELFISASIGITIYPEDADNMMDLVKNADVAMYRAKENGRGSFCFYTAEMNADA 704

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I++ L +A+E  + ++ Y P ++     I G+EALI+W +     +   +F+ +A
Sbjct: 705 RQLHKIEQALRVALEEGQFWIHYQPYVQQSSGLITGVEALIRWRNSAGEIVYPDQFIPVA 764

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I L++L  +   I  W+ +   P I   +N++++   +  L   ++A + + 
Sbjct: 765 EETGLIVPIGLWVLRSVIGVIAQWQRE-GHPDITFSVNVSARQFQEGHLVGQIKAALQEN 823

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  + L  +ES+++ +PE +  +L  ++ +G+ + LDDFGT  S L YL   P D +
Sbjct: 824 QINPQSLMLEITESLMIRDPEHTLNMLKEIKALGVRVALDDFGTGYSSLGYLKQFPIDLL 883

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G   ++    ++ +I+ MA ++   +I + I  +  ++ +    CDY+Q   
Sbjct: 884 KIDRSFINGIANSQDDETMVSAIVSMAHSLGVGVIGEGIENDQQLQRVNLHACDYVQGFF 943

Query: 940 VASPLGFNSILKLLK 954
            + P+ ++ +    +
Sbjct: 944 YSRPMPYDELALFFE 958



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 80/249 (32%), Gaps = 14/249 (5%)

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           +  +    I      +     AS     + + +L      +  G            A + 
Sbjct: 176 WGWMVGSGIYVDDVEHIFQDAASAFMAVILTALLVVWAISVKIGRSITRPLFQTRQAMLR 235

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
           +    + + +    R +   +  AL        I  G      +       Q      E 
Sbjct: 236 LANGDLDVPLEDMDRSELGDLSQALRVFRDQFAINEGLR----LEREESLKQAAEKREE- 290

Query: 407 QSLAVLGSGDIV--WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            +  +  S  +V  W+ D        + +   IL     S+          ++  D    
Sbjct: 291 LARIIEISHTVVLSWENDEEWSLSYVSENCYRILQSGLKSLVLKP-----LVNPEDLPQM 345

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +L +     R  ++ EFR+     +  W    + P+ + + ++++Y G+ +DITE++K
Sbjct: 346 EALLAAGGDASR-WVKLEFRLCLGSEEPRWFECCVLPIKDDHAEVVQYHGVLHDITERRK 404

Query: 525 SLEGILCNA 533
             E  L  A
Sbjct: 405 -GEHDLRLA 412


>gi|229072768|ref|ZP_04205967.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228710259|gb|EEL62234.1| Sensory box/GGDEF [Bacillus cereus F65185]
          Length = 885

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 28  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 85  L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 138

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 139 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 198

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 199 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 258

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 259 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLRTE 318

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 319 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 377 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDTYYLHVTAVPIFLKE-KISG 433

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 492

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 552

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 553 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 612

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 613 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 672

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 673 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 731

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 732 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 791

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 792 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 852 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 879


>gi|170724420|ref|YP_001758446.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169809767|gb|ACA84351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 810

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 134/566 (23%), Positives = 266/566 (46%), Gaps = 16/566 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R   AV  S + +WDW++  + V  +     +LG     +   +  W   +H 
Sbjct: 236 QLNDSQKRWLFAVEISKNGIWDWNLKSNEVFLSDRWKEMLGYEVDELKHELNTWQELLHP 295

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
            D+     +L+ ++       +   R+R  +  + W++ R   +  +  G  +R IG   
Sbjct: 296 EDKIEALKLLNQYLNNEMEEFESVHRLRHKEGHYIWVLDRGMVVDWDETGAPVRMIGTHT 355

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+++  ++ + I+     D LTG+ NR + LD L  +             + VID+D +K
Sbjct: 356 DVSDDVRNQQAIIHQTKHDILTGLANRSALLDELYAL---KVQQQGDFAALFVIDLDNFK 412

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIAD 632
            IND LG   GD +L+ +  R+        ++ARL  + F +++ S  +       +   
Sbjct: 413 MINDALGHHRGDRILIKVAARLSSHFSTNVLIARLGSDEFVLLVKSLGDDLTSVNRRTVA 472

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNH 691
            A  +R+ +    ++  + I ++AS+G       + +   +ML++A+LAM+ AK +G + 
Sbjct: 473 LASQIRQMVGRSFHITNQTINISASVGICVLNDLANMEPEQMLQHADLAMHQAKEKGRDA 532

Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +        +  + I  +L  A+   +L LV+ PI+   D EIV  E L++W HP+ 
Sbjct: 533 HAIYNTEMEEIVQKSLWISSELKRAIVKEQLSLVFQPILD-RDGEIVCAEVLLRWTHPEK 591

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS +EF+ +AE   +I+ I  ++L+     I   + +  +    + IN++++    + 
Sbjct: 592 GPISPAEFIPVAEGSGLIQEIGYWVLKETCYFINRLKARGIVLS-SVAINVSARQFNQDL 650

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +   I +   +   I+L  +E  ++ N +  +  +  L++ GIS+ +DDFGT  S 
Sbjct: 651 FVENLLTEIMEQGLAADTIELELTEYALLTNLDIIKQRMHVLKESGISIAIDDFGTGYSS 710

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL  +P   +K + + ++   E     AI+++II MA ++   ++A+ +  +   + L
Sbjct: 711 LSYLQTLPLSRLKLDAAFVSKIGENDASNAIVKAIINMAHSLNLKVVAEGVETQEQHQFL 770

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
               CD  Q    + PL   + ++ L
Sbjct: 771 RDHDCDTFQGYLFSRPLDEEAFIQSL 796


>gi|228924036|ref|ZP_04087312.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835526|gb|EEM80891.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 909

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 344/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + +                +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLALVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+ ++      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLEKIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIESISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNEFIKFLQK 903


>gi|119775582|ref|YP_928322.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768082|gb|ABM00653.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella amazonensis SB2B]
          Length = 1036

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 143/561 (25%), Positives = 257/561 (45%), Gaps = 13/561 (2%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                E  +     S + +   D   + +T     A I G +   + G   +        +
Sbjct: 452  QEQMELAASVYNNSSEAMSVMDHKGNIITVNAAFADITGYSPKEVLGHHISQFYC--PRN 509

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +  F   ++  +    GR Q E   +  + + + + + +  + ++     R + + +DIT
Sbjct: 510  KPAFYDEVNQAIKE-TGRWQGEMWQQHKNGKEYLIWLTVNTIYDAYQRPHRRVALFSDIT 568

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K   + I   A  D LT +PNR+  LD L   + L++   N+R  ++ +D+D +K++N
Sbjct: 569  EKKAQEQLIWQQANYDPLTKLPNRRMLLDYLDREISLASR-QNVRFALLFLDLDFFKEVN 627

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG  +GD +L+    RI   ++  D++ARL G+ F +++   ++   +   A  + K+
Sbjct: 628  DTLGHDMGDKLLIECADRIKACIRDSDVVARLGGDEFTVLIRDIHDVGGVERAASNILKA 687

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
            IA P  L      ++ SIG   +     T   +LKNA+ AMY AK +G N    F   + 
Sbjct: 688  IAEPFQLGPDSAYISVSIGITLFPEDASTREALLKNADQAMYAAKEQGRNRFNYFTPSMQ 747

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+ + +DL +A+E+ +  LVY PI+ L   ++   EAL++W HP+ G IS +EF+
Sbjct: 748  EQAKYRMRLIQDLRIAIEHQQFNLVYQPIVHLQSGKVHKAEALLRWHHPERGYISPTEFI 807

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD--NELCEGMQA 816
             +AE+  +I  I  ++ E  AR    W  +     I + +N +     D        + A
Sbjct: 808  PVAEDTGLIMEIGSWVFEHAARQCRDWHHEFGTT-IQLSVNKSPVQFRDEGENFERWV-A 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+ +   +   I +  +E +++         L   R  GI ++LDDFGT  S L+YL   
Sbjct: 866  LLEELELTHGGICIEITEGLLLDASSGVAEKLLTYRDAGIQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA+ +   +IA+ +      + L  MGCDY
Sbjct: 926  DIDYLKIDQSFTRNLENDASDRTLCEAIIVMAQKLGMKVIAEGVETAKQQEILKAMGCDY 985

Query: 935  IQDSHVASPLGFNSIL-KLLK 954
             Q    ++P+       + LK
Sbjct: 986  AQGYLYSAPVSREEFETRFLK 1006



 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 1/153 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +       + A       + +  E+ SL +  +    WDWD+  D +      A +LG +
Sbjct: 307 LVIAGFMDISAQTQSEMSVRASREQLSLVLASAELGFWDWDLNNDVIDRNERCADMLGCS 366

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              M    R W+  IH +DR      +D  +         E+R+   + +  W+    R 
Sbjct: 367 VDEMRHNHRIWMDSIHPDDRMAVLKSIDRHLQGHTDSHNVEYRIIRKNGETLWVRDTGRV 426

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           M  +S+G  +R  G+  DIT+ + + E +   A
Sbjct: 427 MQKDSSGKAIRMCGVHLDITQVRHNQEQMELAA 459



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 79/287 (27%), Gaps = 12/287 (4%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFM-YLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            +    L +      + + S+   F    Y         V  + F  +  +     M+ Y
Sbjct: 36  WVWHIMLGLVIGAIGMTIMSARYEFAEGIYFDTRGVLLSVSGLYFGAVPTLIASAMMAIY 95

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
              +    A +   + + +     I   +   +  + +    +L+    + +   +   +
Sbjct: 96  RYGMG-GPAMVAGIAGIAFAAAMGILWRIPWQKNLIEVSTGSLLLLGMLVNIGSLLCFFI 154

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-------RQSLAVLGSG 415
               +   LV  +   V+L+       +         I  D +                 
Sbjct: 155 MPFDLAWELVSTIGTTVMLVCPLATLLLARLLARRLEIERDEKIKLQDDFLFRSQFNVGN 214

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
             +    + +  +   P +  +L  +   +     NW    H  D        +  +   
Sbjct: 215 IGIAITSVDKRWIKVNPRLCQMLKYSEKELL--SMNWEQMSHEEDISVDLAHFNQMLAGA 272

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             + +   R  A D    +  + +     + G +   I    DI+ Q
Sbjct: 273 IDQYELNKRFYAKDGSIVYTHMTVACKRIA-GKVQLVIAGFMDISAQ 318


>gi|326943099|gb|AEA18995.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 909

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHKCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|88860451|ref|ZP_01135089.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas tunicata D2]
 gi|88817649|gb|EAR27466.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas tunicata D2]
          Length = 963

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 154/568 (27%), Positives = 269/568 (47%), Gaps = 11/568 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 +       R S AV  SG  V   +   +     P +  + G  +    G    
Sbjct: 396 QRIIEKEQAEKSANRLSKAVEFSGSGVAIANANFEIEYVNPKLIEMSGFENDHFLGAP-- 453

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L  I  + +     I        R   + +  ++  +N   W+ + + P+   +  I  
Sbjct: 454 LLSIISSDMQILLDDIDLDIRS--RHHWRGDTVLKNKENHPIWVSLSVSPIRELDNSISS 511

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+  A DI+  K+S   +   A+ D LTG+ NR  F  +L   + L+    +    +   
Sbjct: 512 YVASAQDISFVKESQRKMEQLAYFDTLTGLANRAFFRMQLRKSMALAER-GHYAFALFYF 570

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K+IND LG   GD +L+ +  R+ + L+  D +ARL G+ F ++L   ++  K A
Sbjct: 571 DLDEFKRINDTLGHDAGDQLLLQVANRLKQRLRAEDTVARLGGDEFAVLLSGIDDKSKAA 630

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           + A+ ++++I+ PI L   E+ ++ASIG            ++LK+A+LAMY AK +G N 
Sbjct: 631 EVAMIIQETISQPIKLGSNEVIISASIGITMAPDDSPEEDQLLKHADLAMYEAKAKGRNT 690

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++   +R+MI+ +L +A++  +  L Y P +     E+VG EALI+W HP  
Sbjct: 691 YHFYNQELNAAAKERLMIENELRIAIKEQQFELYYQPQVDCRTNEVVGFEALIRWFHPTQ 750

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  +F+ IAE   +I  I  ++L    R      +Q       I IN++++   D+ 
Sbjct: 751 GMISPVKFIPIAEATGLIVEIGEWVLWEACRFAKRLEEQGRGNN--ISINLSARQFKDSN 808

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++ KT  S   + L  +ES++MG+ E +   L  L+ +G+SL++DDFGT  S 
Sbjct: 809 LKALLSRILVKTSISAQSLHLELTESMLMGDVEVAINQLLELKMLGVSLSIDDFGTGYSS 868

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   P D +K + S +         + I  +II MA+ +   ++A+ +     I  L
Sbjct: 869 LSYLKRFPVDILKVDRSFVKDIPADSNDMEITAAIIAMAQKLNLNVVAEGVETSEQITFL 928

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               C  +Q    + PL    + +L K+
Sbjct: 929 KNNNCYIVQGYFFSPPLAEAQVPELYKQ 956


>gi|326388958|ref|ZP_08210540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206558|gb|EGD57393.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 804

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 168/727 (23%), Positives = 299/727 (41%), Gaps = 34/727 (4%)

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
              +    +LI  +   +  +R    V                 +    +    I     
Sbjct: 81  VWLVLWGIALIGAVLGSIMLDRHLNPVDQRRIDLSVMRRQASGTAALALVWAVPILCFGP 140

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK--RLDNDIIQPALVG 373
                          +             +   ++ + L +A      L  +    A+  
Sbjct: 141 WLNTSQRGVVWAIMALLIAGMGFAFAAVPLGSLVFGLVLGLAGIGSFFLYGEYTAAAVAA 200

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVT 429
             V+ V +      +  L       G+    E  SL +     G  D +W  D  R    
Sbjct: 201 CFVIFVAVGVAEAARIFLDGKLAEAGLEDKEEVVSLLLREFEEGEADWLWQIDATRRVRN 260

Query: 430 TTPDIATILGLASGSMHGPI-------RNWLP-YIHINDRDNFRTILDSFVGYRRGRLQY 481
            +P  A  LG  +  + G           W   + H +        L   +  R      
Sbjct: 261 VSPRFAFALGYEADDVEGKPLIQLIAGETWETGFFHPS-----LHDLAERLKRRESFSNL 315

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             RV  +D Q  W  +   P ++ NG  + + G+ +D+TE+++S E I   A  D LTG+
Sbjct: 316 MVRVTLSD-QQRWWELSASPRTDGNGAFIGFRGVGSDVTERRESEEQIAYLARFDMLTGL 374

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR      L   +  +          ++ID+D++K +ND LG  VGD +L S+  R+  
Sbjct: 375 PNRMQLTAALDEAMRRADHWRGC-CAFLMIDLDRFKAVNDTLGHLVGDRLLKSVADRLRN 433

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           L+    +  RL G+ F I+L    ++ ++   A  +   ++ P  + +    + AS+G A
Sbjct: 434 LVGEYGLCGRLGGDEFAIVLGQGVDNERVHAVADRVIAGLSQPYTVDQHTFYIGASVGSA 493

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
                  T   +++NA+LA+Y AK  GG     +  S      +R  ++  L  A+E  E
Sbjct: 494 IGPRDGATVETLMRNADLALYRAKDGGGGVHCGYEPSLHADAEERRQLEFALRHALERDE 553

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             LVY P++      +V  EAL +W  P+ G IS S F+ IAE+  +I  I  + L    
Sbjct: 554 FSLVYQPVVDAETGTVVSFEALARWKSPELGPISPSRFVPIAEDTRLIVPIGAWALRTAC 613

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            +   W D     PI I IN++ + LL+    + + + ++ +   P R+++  +ESV + 
Sbjct: 614 FEAARWPD-----PIKIAINVSGEQLLEAGFADTVISALAASGLPPHRLEIEVTESVFLR 668

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRI 896
           +   +   L R+  +G  + LDDFGT  S L YL  I F T+K + S + G+     + +
Sbjct: 669 DGTVAEETLQRIIALGCGVALDDFGTGYSSLGYLRKIRFSTIKVDRSFVQGAARYNPESL 728

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           AI+R+++ MA ++E +  A+ +  E ++  + ++GC  IQ  +   P+      +L+   
Sbjct: 729 AIVRAVVAMADSLEMSTTAEGVETEEELAMVRQLGCRKIQGYYFGRPMTTEKARELVA-- 786

Query: 957 FPLVKNT 963
            PL + T
Sbjct: 787 -PLARQT 792


>gi|241763392|ref|ZP_04761447.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241367434|gb|EER61745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 948

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 150/592 (25%), Positives = 269/592 (45%), Gaps = 11/592 (1%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS--DGERQSLAVLGSGDIVWDWDIVRDR 427
                 V  +   GF   + V+ +   +Q +       +   AV  +   +   ++    
Sbjct: 355 HWFELSVARIQDPGFADPRFVVLSRDVTQRMQDLDALRKLRHAVEQTPHSIIITNLRGQI 414

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P   T+ G  S  + G     L        +    + +  +       + E   R 
Sbjct: 415 EYVNPSFTTVTGYGSDEVMGRNPRMLGA-GKTSAEVVAQMWERLLSGLA--WKGELLNRH 471

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
              +  W  + I PM +  G I  YI +  DI+E+K + E I   A  D LTG+PNR  F
Sbjct: 472 KTGREVWEYVSISPMRDEQGAITHYISVQEDISERKSNEERIRHLANFDALTGLPNRAMF 531

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R +  L LS   +     ++ +D+D++K +ND LG AVGD VL+ +  R+  LL+  D
Sbjct: 532 SARFSQALGLSQRSEG-SLALLYLDLDRFKNVNDSLGYAVGDGVLIDVAHRLKALLRDED 590

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            ++R  G+ F ++L     +     FA  +   ++    +    + VT S+G A +    
Sbjct: 591 TVSRYGGDEFLVVLP-LTTAQGAVHFAERLHGELSKACQVESHALLVTFSVGIAMYPGDG 649

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725
                +  +AE+AMY AK  G +H   F           + I+  L  A+   E+ L + 
Sbjct: 650 SDMEALTHHAEVAMYKAKEMGRDHYCFFSADMQAQSSRLLRIENGLRTAIAQGEMSLHFQ 709

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P  R+ D  +VG+EAL++W HP+ G +  +EF+ +AE    I  I L++L+     +  W
Sbjct: 710 PQWRVHDRRMVGVEALLRWTHPELGVVGPAEFIPVAESSGQIIDIGLWVLDTALACLRRW 769

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           RD      + + +N++       +L E +Q  + +       ++L  +ES+ M  PE++ 
Sbjct: 770 RDA-GHTDLTVAVNLSLAQFRHPDLVEVVQKALQRAGVPAEVLELELTESIAMHEPEKAI 828

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIP 904
             +  L  +G+ L+LDDFGT  S  SYL  +    +K + S +      R ++I+R+I+ 
Sbjct: 829 ACVRALADLGVQLSLDDFGTGYSSFSYLQRLRVHRLKIDQSFVRNLDTARGMSIVRAIVE 888

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           M++++    IA+ +     ++ L  + CD +Q  H++ PL   ++  LL++R
Sbjct: 889 MSRSLGLATIAEGVETPHQLEALAGLSCDMVQGYHLSRPLPVPALEALLEQR 940



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 78/261 (29%), Gaps = 10/261 (3%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSF----YYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           R       +   G    A+L+        + P    +  ++     ++     +    ++
Sbjct: 139 RLRPVAFMLLLVGAIHAAVLYYPWILPETFVPATGLTGFKVGAEYGLIVLHVLVFGLLLR 198

Query: 333 GYERAVLLIPAWILIFIWFIGLW-MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
              +        +L  +  +GL     T  +D       L     L+  L  +  I    
Sbjct: 199 QMRQPTTFNAPPLLAAVGTMGLGEFFFTLYVDAADHFNLLGHIYKLLGYLFLYRSIIQG- 257

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + +    +     +    D++++       +     +  +       + G   +
Sbjct: 258 TIEAPYRALARSEKSLKAVLDAVPDLMFEMTRSGRYLRVHTRVPGLTERVPEQIAGRTID 317

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +  +     RT L             +F +   D + HW  + +  + +      R
Sbjct: 318 --EVLPPDAAGVVRTALTQA-EATGHTQGQQFALEMTDGR-HWFELSVARIQDPGFADPR 373

Query: 512 YIGIANDITEQKKSLEGILCN 532
           ++ ++ D+T++ + L+ +   
Sbjct: 374 FVVLSRDVTQRMQDLDALRKL 394


>gi|256828836|ref|YP_003157564.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Desulfomicrobium baculatum DSM 4028]
 gi|256578012|gb|ACU89148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfomicrobium baculatum DSM 4028]
          Length = 1262

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 142/576 (24%), Positives = 264/576 (45%), Gaps = 9/576 (1%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +  +       Q +             S   +   D V           T+ G     
Sbjct: 683  GTVMDITQRRAMQQALDRQMALFGQLFEDSPLAIALVDTVGRIAQVNGGFETLFGYKRAE 742

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            + G        +         +I    +      +Q E   R +      + +   P+  
Sbjct: 743  ILGKDNRLF-IVPEEQLSEINSIRQRILDGET--VQRETLRRTSRGDIVPVNLLGHPVR- 798

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              G+I     I  DI+E+K+    I   AF D+LTG+PNR  F +RL   ++ +    + 
Sbjct: 799  IGGEITNIFWIYQDISERKEFERQITHQAFHDSLTGLPNRSLFRERLGRAVERTKRRPDY 858

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
                M+ID++K+K +ND LG   GD +LV +  R+   ++  D +ARL G+ F I+L   
Sbjct: 859  HFAAMLIDLNKFKWVNDSLGHQAGDALLVEIASRLKSCVRSVDTVARLGGDEFAILLEEF 918

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
              + ++   A  ++  +        +EI   AS+G    T     + ++L++A++AMY A
Sbjct: 919  RTNKEVISVASRIQNEVRRAFLWNGKEIVSGASVGIVLQTRDCAGAEDILRDADIAMYKA 978

Query: 685  KHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            K RG  H V   R+     + + ++ +L  A+E + L L Y PI  +   ++ G EAL++
Sbjct: 979  KERGRGHLVFHNRMRQEVLEVINMENELRRAIEGNSLELHYQPIFDVDGGKLEGFEALVR 1038

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801
            W HP+ G I    F+ +AEE  +I  +  +++    R + SW D++      + + +N++
Sbjct: 1039 WRHPEHGMIMPDRFIPLAEESGLIVPLGQWVVNAACRQLKSWDDESGTAEYGLTMSVNLS 1098

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             K    + L + +   + +   +P R+KL  +ES ++ +P  +   L RL++IG+ L +D
Sbjct: 1099 CKQFAQHTLVDMILRALRENDIAPPRLKLEITESAIILDPAAAAEKLRRLKEIGVLLAVD 1158

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S LSYL   P D +K + S ++G+   ++   I+RSI+ MA ++   + A+ + 
Sbjct: 1159 DFGTGYSSLSYLRQFPMDILKIDRSFISGTDTPKENAEIVRSIVDMAHSLGLRVTAEGVE 1218

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  ++ L  + CD  Q    + P+       ++++
Sbjct: 1219 TQEQLERLQSINCDRAQGYMFSKPMAPGDAGDMIRQ 1254



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 50/152 (32%), Gaps = 3/152 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440
                 + +     +   +    E        + + ++        +   P +A I G  
Sbjct: 552 FFIGTFRDISERKRYENELRKAEENFRGIFENAVEGMFRTTPHGRYLQANPALAKIYGFE 611

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   +     +    +++      R      +G +     +E  +R  D    W+    R
Sbjct: 612 SPAELMRHYDDISRQLYVE--AGRREEFIRLLGEKEEIFDFESAIRRKDGSVIWISENAR 669

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            + ++ G+++ Y G   DIT+++   + +   
Sbjct: 670 AVKDAAGNVVCYEGTVMDITQRRAMQQALDRQ 701



 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 410 AVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            V  + D +  +       ++  P  + I G  +  + G        +            
Sbjct: 454 IVKSAADAIIVFTTDTLRIISANPGASFIFGHPALRLEG--MTIPELLPAWGIPGSGDNE 511

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            S +   R   Q E   R A+     +   I   S   GD   +IG   DI+E+K+    
Sbjct: 512 ASLLHAMRSSNQVEVTGRRANGSQVTLEAVITQSSGRQGD--FFIGTFRDISERKRYENE 569

Query: 529 IL 530
           + 
Sbjct: 570 LR 571


>gi|302878381|ref|YP_003846945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302581170|gb|ADL55181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1013

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 266/575 (46%), Gaps = 16/575 (2%)

Query: 391  LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            LA     +       R + A   + + +   D     +       +I G  +  + G   
Sbjct: 445  LAADITERQKVESELRIAAAAFEAQEGMLITDRHNVIMRVNQAFTSITGYLAEEVLGKNP 504

Query: 451  NWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +L    H  D   ++++ +      +G+ + E   R  D + +   + I  + +   ++
Sbjct: 505  CFLASGRH--DAGFYQSMWEGL--NEKGKWEGEVWNRRKDGEIYPEYLLISAVKDIKNEV 560

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              Y+    DIT  K +   I   AF D LT +PNR+   DRL   L  SA + N+   ++
Sbjct: 561  ANYVATFRDITANKAAESEIKKLAFYDPLTLLPNRRLLTDRLNHALASSARNRNI-GALL 619

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--- 626
             ID+D +K +ND LG  +GD +L  +  R+   ++  D LARL G+ F +IL + +    
Sbjct: 620  FIDLDNFKTLNDTLGHDMGDALLKQVALRLKSCIREDDTLARLGGDEFVVILENLSELAM 679

Query: 627  --SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
              + K       +  ++     L  +E    ASIG   +    ++  E++K A++AMY +
Sbjct: 680  DAATKAELIGEKILAALNQVYPLASQEYHGAASIGVTLFAGHALSIDELMKQADIAMYQS 739

Query: 685  KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K  G N +  F + + +       ++ +L  AV+  +L+L Y   +       +  EALI
Sbjct: 740  KKSGRNTLRFFDLDTQKIINERAELEIELRKAVDKKQLHLHYQIQLN-SVGTPLSAEALI 798

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W HP  G IS + F+ +AE+  +I  I  ++L+     + SW+D+     + + +N+++
Sbjct: 799  RWVHPVRGLISPAHFIPLAEDTGLILPIGQWVLDTACAQLHSWQDERFTQDLTLAVNVSA 858

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            K          ++  + +   +P  +KL  +ES+++ N E   + +  LR++GI  +LDD
Sbjct: 859  KQFHQKNFVALVKETVQRHAINPKLLKLELTESMLVENIEDIIVTMNALREMGIQFSLDD 918

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S L YL  +P + +K + S +     +    AI+R+I+ MA+++   +IA+ +  
Sbjct: 919  FGTGYSSLQYLKRLPLNQLKIDQSFVRELSSSSSDRAIVRTIVAMAESLNLNVIAEGVET 978

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     L  +GC+Y Q      P+    +  +L  
Sbjct: 979  EEQHTLLQDIGCNYYQGYLFGKPMPIEQLDAILAR 1013



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 127/419 (30%), Gaps = 46/419 (10%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
            A++    F  +    I    SF          ++ L  ++   T   +         AV
Sbjct: 82  SARLMRFRFGVLVSGVIWGGASFLLFPQENLPHQMFLIFMLAGLTTASVVSYSADLVSAV 141

Query: 339 LLIPAWILIFI--WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           +   + +   I    I             ++    +   + ++       I+        
Sbjct: 142 IFALSIVTPLIARLLIVSDELAMAMAIAVLLYLGFLMVSLRLINRNLIENIRMRHEGELR 201

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +    ER  L +  S   ++ +D+           A ++G     ++G     L   
Sbjct: 202 EAAMNVSKERYRLLLAHSPVGIFHYDLNFVITYCNARFAELIGCPVAQVNG-----LDLY 256

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           +++D       L + +   RG  + +++    D    W+ +      ++ G+++  I I 
Sbjct: 257 NLSDNA-VLPALTAALAGDRGYFEGQYQAVFNDG---WIAMTCAASCDARGNVIGGIAIV 312

Query: 517 NDITEQKKSLEGILCNAF--QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             I E+K + E  L  +    D       R+ F   L           NL   + ++ +D
Sbjct: 313 ESIHERKMA-EMALALSNQKHDEE-----RKLFQTILD----------NLPLGMWMLGVD 356

Query: 575 K-YKKINDVL----GIAVGDDVLV-SLTRRI----GELLKFPDILARLSGNRFGIILISE 624
              K +N+      GIA  D       +  +     +  K  D    + G          
Sbjct: 357 GKIKFVNETFCNALGIAAHDFFDAGHYSDLLPLSIADKCKESDRACFMQGE-------PH 409

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++  +              + L +    VT  IG A+  + +      L+ A  A   
Sbjct: 410 YSTEWLPFTDGRAHLLEMTRVRLHDSANNVTGLIGLAADITERQKVESELRIAAAAFEA 468


>gi|241765598|ref|ZP_04763555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241364595|gb|EER59649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 695

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 133/587 (22%), Positives = 271/587 (46%), Gaps = 20/587 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L  F +I  +         +    ER       + + +  +            +  + G 
Sbjct: 121 LGSFVLITDITDRWRAEATVRQSEERMRKFTEATDEAI-VFHRDGVITDGNEALTRLTGY 179

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G  R+   +I       +R +   +    R    YE  +R  D     + +  +
Sbjct: 180 SLAEVLG--RSIFNFISPE----WRAVAYEYTRGGREH-PYEVTIRHKDGHTIPVEVVGK 232

Query: 501 --PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             P  +++  I+    +  DIT +K++ E     A  D LT +PNR+S +++L   L ++
Sbjct: 233 TMPQLHADYRIV----VVRDITARKEAQERETFLALHDTLTQLPNRRSLMEQLGKALSMA 288

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                 +  V+ I++D +K +ND LG   GD +L  +  R+ + ++  D++ARLSG+ F 
Sbjct: 289 RRR-KSQVAVLFINLDHFKTVNDSLGHHAGDQLLRDVAERLRQGVRETDLVARLSGDEFA 347

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +L    +    A  A  + +++     + +  +T++ SIG + +     T+  +L+ A+
Sbjct: 348 AVLTDIASPADAAMVADKLLEAMRGVFTVDQLPVTMSPSIGISMFPCDDATAEGLLRCAD 407

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMYHAK  G  + + ++        D +  +  L  A+      L Y P IRL D  + 
Sbjct: 408 TAMYHAKDSGRGNRQFYQPGMDASAKDVLQQERLLREAIAEGAFVLHYQPQIRLADGSLQ 467

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP+ G +  +EF+  +E   +I  I  +++    R + +W+D+     + +
Sbjct: 468 GFEALVRWRHPERGLVGPNEFITFSESRGLITPIGRWVMHEACRQLKAWQDEGLAM-VPV 526

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++ +    ++   + A++  T   P  +++  +ESV+M    +    L  ++ +G+
Sbjct: 527 AVNLSALEFRQRDVAGELAAVLHATGLQPQFLEVELTESVLMHQTGQVLETLQAIKTLGV 586

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S L+YL   P D +K + S +T +  +   +AI+ +II M ++++   I
Sbjct: 587 GVAIDDFGTGYSSLAYLKRYPIDKLKIDRSFVTDTPQSTDDVAIVTAIIQMGRSLQLQTI 646

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           A+ +     +  L ++GCD IQ   ++ P+   +    L+      +
Sbjct: 647 AEGVETPAQMDLLRQLGCDLIQGHAISPPMDAEAAHAWLQSHAAATR 693


>gi|228911140|ref|ZP_04074946.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228848503|gb|EEM93351.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 909

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 175/870 (20%), Positives = 352/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L +  +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWIILSTGALSYFIGDIVVAYQRLIVKDFYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  +       Y+   N   L +  ++      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLVSFAFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T +    + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              +L I    +     +   +       + + +++      L+  +        Q  L 
Sbjct: 281 VTLILFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+      I
Sbjct: 401 --YYSLIYEEDLEEMINSFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKE-KI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G 
Sbjct: 575 VQKIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   
Sbjct: 695 LLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           ++L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  
Sbjct: 754 DQLIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  N  +K L++
Sbjct: 874 FLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|219668345|ref|YP_002458780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfitobacterium hafniense DCB-2]
 gi|219538605|gb|ACL20344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfitobacterium hafniense DCB-2]
          Length = 981

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 136/573 (23%), Positives = 277/573 (48%), Gaps = 10/573 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q         + +    E Q L +  + D +WDWD++RD        +++LG     +  
Sbjct: 411 QQFDELLSNQRQLKETQELQELVLEAAIDAIWDWDMIRDIRVYHSKNSSLLGYKGDEIR- 469

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            + +W   +H +D+  F+  L+  +  +  R   ++R++  D ++ W+    + + + +G
Sbjct: 470 SVEHWNALMHPDDKAEFQKKLNQHLFEKTARYSCDYRIKDKDGEYKWIRAFGKALYDQSG 529

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  R +G   DIT+ K+    I   A+ D LTG+PNR    + + + +  +  +      
Sbjct: 530 NPYRMVGSHRDITDIKEKEMHIKYLAYHDFLTGLPNRAQIQEIIKSEILKA-EEQGTLLG 588

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +DID +K IND  G   GD +L++++R + ++L    ++ARL+G+ F I++      
Sbjct: 589 VLFLDIDNFKAINDSFGHPTGDQLLITISRHLTQIL-DNHVVARLAGDEFLILIRDIQEK 647

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +  D+A  + K     + + ++   ++ SIG   +     +   +L NA+ AM+ AK  
Sbjct: 648 EQAIDYAERIMKLFETALVIYKQYCYISTSIGITFYPQDGESYESLLINADTAMHKAKEL 707

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G  +   F +   R   ++  I+ +L  A+E  E  L Y P +     +++GLEALI+W+
Sbjct: 708 GKRNYVVFNMEMKRAVVEKAEIQNNLRKAIEFEEFVLHYQPQVEPHTGKVLGLEALIRWE 767

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             +   I  ++F+ +AEE  +I  I  +++      +    D      + + +NI+++ L
Sbjct: 768 -KEHKLIPPNKFIGVAEETGLIVPIGDWVVATACAFLKKLHDLGYRE-LTMSVNISARQL 825

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFG 864
            ++   E +  ++      PS+++L  +E++++   +     +L RL +  I ++LDDFG
Sbjct: 826 QEDRFVEKVLKVLRDNDLDPSKLELEITETMLIEFLDAKISNVLARLIENDIKISLDDFG 885

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S L+Y+  +P  T+K + S +     T +   I   I+ MA  +   ++A+ +    
Sbjct: 886 LGYSSLNYIKQLPISTLKVDKSFIDDIQSTPESKNITGLIVIMAHQLGLKVVAEGVEKPE 945

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L +  CD IQ    + PL    ++K+L +
Sbjct: 946 QREYLIKYDCDAIQGYLASKPLPEEELIKVLNK 978


>gi|254228524|ref|ZP_04921949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262392704|ref|YP_003284558.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|151938906|gb|EDN57739.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262336298|gb|ACY50093.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 815

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/554 (26%), Positives = 259/554 (46%), Gaps = 13/554 (2%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +        I G  S  + G     L   H +   
Sbjct: 267 QLSLASKIFNNSQEGMVITDRNANIIDVNTAFTQITGYRSEEVIGKNPRILRSGHHD--Q 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 GFYKQLWHQLETK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   L  L   ++    +       + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKNQQT-FATLFLDIDHFKHINDS 442

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F IIL   ++ + + +    +     
Sbjct: 443 MGHFCGDQLLSKLAIRLQDILHLNAHVARIGGDEFVIILPDVHSDVALLETVGDILSVFQ 502

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + V+ SIG A +      S  +LKNA+ AMY AK  G N    +      
Sbjct: 503 QPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L L + P   L    IVG+E L++W HP++G +  ++F+ 
Sbjct: 563 KSVSHVRIQSALHQAIEKQQLRLEFQPQYNLEQHAIVGVETLLRWQHPEFGLVPPADFIP 622

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++L    +   +W +Q       I +N+++  L  +   + +  +++
Sbjct: 623 IAEKTGLIQSIGEWVLLHACQQGNAWLEQGVEFG-RIAVNVSALQLQQSNFIQRLSDILN 681

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R+ L  +ES ++ +P+++   L +LR++GI ++LDDFGT  S LSYL  +P +
Sbjct: 682 QTGFPAQRLDLEITESFLLIDPQQAIASLNQLRELGIEISLDDFGTGYSSLSYLKGLPIN 741

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   S     AI+ +II M K +   ++A+ I  +     L   GC Y Q 
Sbjct: 742 KLKIDRSFVSDVPSNSDSNAIVNAIIAMGKTLSLKVVAEGIETQEQADYLFEKGCVYGQG 801

Query: 938 SHVASPLGFNSILK 951
              + P+    + +
Sbjct: 802 YLFSRPVSAEKLFR 815



 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 4/179 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD-GERQSLAVLGS 414
            A+      D     +   L  +V  + F V  H        Q   +         +   
Sbjct: 96  FAVLALTHPDDQITVVSAWLSALVGRMSFDVSSHYQQERTRHQTAATTPLPTLQEFIDCL 155

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D +W   +      T   +       +  + G   +          + F    +  V  
Sbjct: 156 EDHIWIKGMDGLYSMTNRSVENAWQKTNSEIIGK--DDFALFSHERAEKFIEADNLVVAT 213

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               +  E R    +N   W+     P+ +++G+++  +G+  +IT ++K +E  L  A
Sbjct: 214 GTLNIVEECRQIDENNNPTWLETIKSPVRDNDGNLIGILGMTRNIT-RRKMVETQLSLA 271


>gi|330808553|ref|YP_004353015.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376661|gb|AEA68011.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 858

 Score =  536 bits (1380), Expect = e-149,   Method: Composition-based stats.
 Identities = 141/627 (22%), Positives = 282/627 (44%), Gaps = 26/627 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF----------SQG 399
           + +   +    +     + P L G L ++ +L  +     +    +           +  
Sbjct: 242 FSLVSRLERPGQQLLWSLVPPLGGALFILALLTAYFSRYALRTARHVDASYDSLEQSAHA 301

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +  ER       + D +W+ D  +     +    T+ G +     G     L Y    
Sbjct: 302 LEASEERFRAVAEAASDWIWEIDGQQRITYLSGRFNTVTGFSDQQWLGQDIEQLLYC--- 358

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D       L      +          R    Q  +  +  RP+ N   +++ Y G A+DI
Sbjct: 359 DTTPIALWLGKLTEEQNAS-NLRCSYRDHSGQLRFCRVSARPIYNKA-EVVGYRGTASDI 416

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T++  +   +   +  D LTG+PNR      L   L   A + +   T++++D+D +K I
Sbjct: 417 TDEVAAHAQVQHLSMHDALTGLPNRNKLARHLDDAL--VAKEHSAPLTLLMVDLDNFKPI 474

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD VL+ + +R+ +  +  D++ARL G+ F ++L    ++ +I  F   +  
Sbjct: 475 NDSLGHPAGDAVLLEVAQRLRDCTREQDLVARLGGDEFVVVLNGMEHTTEIDRFCERLID 534

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           S+  PI      + + ASIG A          E+++ A++A+Y AK  G      F  ++
Sbjct: 535 SLQQPILYETHSLHIGASIGIAVSRRQGYVPGELIRCADIALYQAKSEGKKTWCYFASQM 594

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     R  ++ DL  AV+ +E  L + P   +   EIV +EAL++W HP  G +S   F
Sbjct: 595 NDQIQHRRQLESDLRQAVKKNEFVLHFQPRYTVDGREIVAVEALVRWQHPTQGLLSPDAF 654

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  ++ ++L       ++W  +     + + +N++      +++ E ++ +
Sbjct: 655 IPLAEQTDLIVPLSQWVLREACETALTWPGE-----LMVSVNLSPAQFERSDVVEDVRQV 709

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T +  SR++L  +E+V++ + + +  ++  L+++G+ L +DDFGT  S L YL   P
Sbjct: 710 LIETRFPASRLELEITENVMLNDVDGALQVMNALKELGVRLNMDDFGTGYSSLGYLRTYP 769

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +   +     +    A++++II + K +  T+ A+ +  +  +  L    C  +
Sbjct: 770 FDGIKIDKRFIASMSNSSNDRAVVQAIINLGKAMGLTVTAEGVETQAQLGSLGSDQCHEV 829

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKN 962
           Q   ++ P+   +   LL    PL K 
Sbjct: 830 QGYFLSRPIDKQAFAHLLASGLPLPKT 856


>gi|46202314|ref|ZP_00053429.2| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 723

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 169/708 (23%), Positives = 290/708 (40%), Gaps = 45/708 (6%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            I   G A IA +     + P+   +      A++       +++  ++           
Sbjct: 29  RIESVGWAVIATMPTSVAFAPIQRLTFEIYKDAALASLIIAILLWLFVRRQ--------- 79

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
              +      L    +    N  + P  V G   I  L+      H   +    Q +  +
Sbjct: 80  LAPLEHSAEMLNAMASG---NRPLSPLPVEGGPEIRQLLDSFNKFHDRISSQ-KQSLRDN 135

Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+  LA     G+ + +   D     V+       + G     + G   +      H  
Sbjct: 136 AEQLVLAASVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYDLEELVGQNPKILKSGRH-- 193

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D   +  +  S V    G    E   R  + + +   + I  + +  G + R + IA+DI
Sbjct: 194 DAAFYAEMWQSIVT--SGNWSGEVWNRRKNGEIYPERLTISTIYDGEGQVQRRVAIASDI 251

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T QKK+ E I   A  D LTG+PNRQ FLD L   L  +    +    V+++D+D++K+I
Sbjct: 252 TTQKKAEEIIWHQANHDLLTGLPNRQRFLDLLRKDLARADGLPDRVVGVLLVDLDRFKEI 311

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A+GD +L+ + RRI   L   D++  L  + F + ++ + ++ +I     A+R 
Sbjct: 312 NDTLGHAIGDQLLLEVVRRIRSCLSETDVVGHLGADEFIVSMVDDLSTARIEATVAAIRM 371

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +IA P +     + +TASIG  ++ +      E+L+N + A+  AK  G +    F  S 
Sbjct: 372 AIAEPFHSGSDTVHLTASIGITAYPTDGGDIEELLRNVDQAVREAKDGGRDRSCCFTESM 431

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R+ +  DL  A+   +  + Y PII +    IV  EAL++W HP+ G +S + F
Sbjct: 432 REAGQTRLQLANDLREALVAGQFEVYYQPIIDMPSRTIVKAEALLRWRHPERGFVSPALF 491

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-----------------IFILINI 800
           + IAEE  +I  I  ++  + A       D+                        I +N 
Sbjct: 492 IPIAEETGLISDIGNWVFRQAAATARRLCDRCPYVNGGICRKAEMAGPNAPCLFQIAVNK 551

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +              + +   SP  I +  +E +++G        L + R  G+ + L
Sbjct: 552 SPRQFFSGFSHLEWAEHLRQLNISPQCISIEVTEGLLLGQHADVMERLSKFRAAGMQIAL 611

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S +SYL     D +K + S +   T+     AI  +II MA  +   ++A+ I
Sbjct: 612 DDFGTGYSAMSYLKRFDIDYIKIDQSFVRDMTDDSSDRAIAEAIIVMAHRLGMKVVAEGI 671

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVKNT 963
             E     L   GCD+ Q    A P+  +   +L   L E   L + +
Sbjct: 672 ETEEQYALLAAAGCDFGQGYLFARPMPVDQFEQLVGRLDEPAALPQRS 719


>gi|312958311|ref|ZP_07772832.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens
           WH6]
 gi|311287375|gb|EFQ65935.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudomonas fluorescens
           WH6]
          Length = 637

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 157/629 (24%), Positives = 276/629 (43%), Gaps = 19/629 (3%)

Query: 334 YERAVLLIPAWILI-FIWFIGLWMAITKRLDN----DIIQPALVGGLVLIVILIGFTVIQ 388
           Y RA+     ++L+   W      A+ + LD+    ++         V    ++ + +  
Sbjct: 5   YRRALGTGLVYLLVSIAWIGLTEHALIEFLDDPSRLNLWLQVRGYVWVTFSAVLIYLMGA 64

Query: 389 HVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                    Q    + ER   A      + + V   D     V        I G     +
Sbjct: 65  RFAQGHPLPQSHHDNRERLRQAAAVFDCTREGVLVTDAQGLIVHVNRAFMEITGYQREDV 124

Query: 446 HGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G     +    H +    ++ +  +    R G    E   R    + +     IR + +
Sbjct: 125 MGRQPSLFKSGRHSS--SFYQQMFQTL--ERIGEWSGEIWNRRKSGEIYPQWQTIRVIHD 180

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G + +Y+ + +DI+  K S   +   A  D LT +PNR  F DR    L  +      
Sbjct: 181 DHGKVSQYVAVFSDISAIKDSEHELAHLAHHDPLTDLPNRLLFTDRAEQALASAQLHKRG 240

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++++D+D +K IND LG  VGD +L     R+  LL     LARL G+ F +I  S 
Sbjct: 241 -CALLLLDLDHFKIINDSLGHNVGDQLLKLAGERLKGLLGPGVTLARLGGDEFAVIAESC 299

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
              ++ A  A  M   +  P      ++ V+ASIG + + S  +++ ++L+NA+ A++ A
Sbjct: 300 PQVVQAAALAQRMLDVMKQPFIFDGHQLFVSASIGISLFPSDALSAEQLLRNADSALFKA 359

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      +     +   +RV I  +L  A+   EL + Y P+  L    ++G+EAL+
Sbjct: 360 KSVGREGYALYTEELTAHAQNRVEIASELRRALVQHELRVYYQPVYALHSGRLIGVEALV 419

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +  +EF+ IAE   +I  I+ +++++  R +  W         FI +N++S
Sbjct: 420 RWQHPERGLVPPAEFIPIAERTGLIADIDAWVMDQACRQMCQWLAAGVPLS-FIAVNVSS 478

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     EL   +  ++  T   P+ ++L  +ES VM +PE +   L  LR++G+ L +DD
Sbjct: 479 RLFARRELYGQVAQVLRDTGLDPAFLELEVTESAVMDDPEVALEQLHHLRELGLRLAIDD 538

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L  L  +P   +K +   + G    E  +AI+R +I +AK++   + A+ I  
Sbjct: 539 FGTGYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDVAIVRVVIALAKSMGMQVHAEGIEQ 598

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               + L    CD  Q      P+  N I
Sbjct: 599 VEQARFLLEQDCDMGQGYWFGRPVPANEI 627


>gi|330810802|ref|YP_004355264.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327378910|gb|AEA70260.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
            brassicacearum subsp. brassicacearum NFM421]
          Length = 1092

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 144/586 (24%), Positives = 273/586 (46%), Gaps = 26/586 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             T ++ +         + +  E+ + A   S D +   ++   R +        + G  +
Sbjct: 516  VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAITITELESGRYLEVNDGFCRLTGYRA 575

Query: 443  GSMHGP----IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + G     +  W         +  R  L + +  +   +  E   R    +   + + 
Sbjct: 576  DEVIGHTVYEVGIWAE-------EKQRAALLAELHLKGRVVHQEMLGRNKRGEILTVEVS 628

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + P++    +    +  A D++  + +   I   A+ D LT +PNR   +DRL+  + L 
Sbjct: 629  VEPITL--NETACLLLTARDVSLLRNAEAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 686

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F 
Sbjct: 687  KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFV 745

Query: 619  IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L     S      ++   A  +R+ ++ P+ L  + + VT SIG A       T +++
Sbjct: 746  VLLSGLEGSRNEVSKQVRTLADTLRELLSEPMFLDGQRLQVTPSIGIALIPDHGSTPTDL 805

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            LK A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   E  + + P +   
Sbjct: 806  LKRADIALYRAKDSGRNTSQMFHTTMQKAASERLRMETDLRLALARGEFSVHFQPQVDAR 865

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            D  I+G EAL++W HP+ G  S +EF+ + E+  +I  +  ++L+           +  +
Sbjct: 866  DNRIIGAEALVRWHHPELGAQSPNEFIKVLEDSGLILEVGTWILDEACDGFKQLIAKGKI 925

Query: 792  PP--IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P    + +NI+ +    ++  E ++  +       S +KL  +E +V+ N + +   + 
Sbjct: 926  DPQQFSLCVNISPRQFRQSDFVERIENSLVTHGLPFSLLKLEITEGIVIQNLDDTIAKMR 985

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
            RL+K+G+S  +DDFGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+
Sbjct: 986  RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVRDATSDPNDAEIIRAIVAMAR 1045

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++   +IA+ +     +  L  +GC   Q    + PL   +  +LL
Sbjct: 1046 SLNLIMIAEGVETLEQLHFLQGLGCHLYQGYLHSRPLPLEAFERLL 1091



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 3/150 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +            Q +    ER  LA+  +    WDW I    +  +   A + GL   
Sbjct: 262 LSTFLDTTEQKLAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPK 321

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             H     +   +   +R+N R    S      G  Q  +RV+  D    ++  R R   
Sbjct: 322 PFHESFDAFFEGVPTEERNNMRNAYRSLREGPAGNYQLTYRVQLPDGSSRYLESRARLYR 381

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNA 533
           N +G  LR  G   DIT+Q   +E     A
Sbjct: 382 NDDGSPLRMAGTLLDITDQ---VEREQSLA 408



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  +    +   A+ G+    W WDI   +++ +     + G           ++L  +
Sbjct: 22  SEQSWDSAPQLLAALNGARLGAWSWDIETGKISWSRGTQALFGFDPRQPLPADVDYLDLL 81

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR        + V           R+   D   HW+ I    + + +G   R IG+ 
Sbjct: 82  LPEDRARAVRAFHAAVAGAPLEQAMHHRIVWPDGSLHWLEISGSVLPDKHGRP-RMIGVI 140

Query: 517 NDITEQKKSLE 527
            +IT Q++  +
Sbjct: 141 REITHQREREQ 151



 Score = 39.5 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 19/168 (11%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        R +          G  +
Sbjct: 391 AGTLLDITDQVEREQSLAASEEKFATLFQVSPDPICVTHQDSGRFLEINSSFTQTFGWTA 450

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIR 500
             + G   + +        D   + L         +        V   + Q    +I  R
Sbjct: 451 SDVIGLDADEIGL-----WDASGSSLQRIERVIREQSLSNVAIVVHHKNGQPLTCVISSR 505

Query: 501 PMSNSNGDILRYIGIANDITEQKK------SLEGILCNAFQ---DNLT 539
            +  + G+    +    DIT+Q++      + E     AF    D +T
Sbjct: 506 QI--NVGNQPCIVTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAIT 551


>gi|83646582|ref|YP_435017.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83634625|gb|ABC30592.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 913

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 144/560 (25%), Positives = 267/560 (47%), Gaps = 14/560 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIND 460
            + ++ ++      + V   D  R+ V        I G     ++G   R      H  D
Sbjct: 339 KELQQAAVVFDAIREAVIITDDARNIVAVNNAFTDITGYTLDDVYGRNPRLQQSGRH--D 396

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  +R++  S   +  G  Q E   +  + + +     I  + + NG++  Y+ + +DI+
Sbjct: 397 KTFYRSLWRSITEH--GHWQGEIENKRRNGEIYPAWQNINVVYDKNGNVANYVSVFSDIS 454

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             K+  + +   A  D+LTG+PNR  F + L   L+ +     +   +M ID+D++K IN
Sbjct: 455 VIKEKEKQLRHLANHDSLTGLPNRLLFFNSLENSLERARRR-RMEVALMFIDLDRFKIIN 513

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G   GD +L ++ RR+ E ++  D++ARL G+ F I L   +N+   A  A  + ++
Sbjct: 514 DTMGHEAGDILLKTVARRLLEAVRGEDMVARLGGDEFTISLEELSNTEDAAAKAGKLIET 573

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           I  P+++   EI  +ASIG A +      +  + + A+ AMY AK    N  E +     
Sbjct: 574 IRQPVHIGGHEIVCSASIGIAIFPHDADNAQNLARAADAAMYRAKELHRNTFEFYTSELT 633

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + + +  ++  A+E +E  L Y P   L    +VG E L++W HP  G I+   F+
Sbjct: 634 ERAIEHLTLSSEMRQALERNEFELYYQPQFNLTSGRLVGAETLLRWRHPTRGLITPYCFI 693

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I  I  +++ ++ RD+  W       P  I  N++SK L   ++   ++  +
Sbjct: 694 NIAEDSALIDPIGGWVINQLCRDVAGWLKGGLKLP-RIAFNVSSKQLEHYDVKGRIEHAL 752

Query: 819 SKTLYSPS--RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +    PS   ++L  +E  +  + ERS  +L ++R +G+S+ +DDFGT  S LS L ++
Sbjct: 753 QRWGLEPSDLDLELEVTEGAL-QHEERSVEVLRQVRLLGLSVAIDDFGTGYSSLSRLKHM 811

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P DT+K +   +          A+   II + + +   ++A+ +     ++ L    CD 
Sbjct: 812 PIDTLKIDRMFIRDLPDDPNNQALASGIILLGRALGLKVVAEGVENVEQLRFLQERNCDE 871

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q   ++ PL   +  K+LK
Sbjct: 872 AQGFLLSKPLPKAAFEKMLK 891



 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 7/179 (3%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +Q A++  L+  V+LIG  V   + A    ++ +         A   +    W WD+ R+
Sbjct: 53  LQSAMLYILIACVVLIGGVVAWVLTANEARNKALRESRNNLDKAQQIARLGNWVWDLKRN 112

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V  +  +   LGL+          +L  +H +DR     ++D  +  ++     E RV 
Sbjct: 113 EVYWSDQVYRNLGLSLHDNKASYEKFLECVHPDDRARIVKLVDEALENKQV-YGIEHRVI 171

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF--QDNLTGIPN 543
             D +   +      + +  G+ ++  G   DITE+K+        A    D    + N
Sbjct: 172 WPDGEERIVCGAGEVIFDVQGNPVQMHGTIQDITERKRDENRKNEYAHLIYD----LYN 226



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 2/112 (1%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     V         LG +   + G +  +   +  +        L             
Sbjct: 236 DPRGVIVDINETALRWLGYSRSELVGKVM-FCDLLSEDCVQLCWDKLGQLKKGGALS-NL 293

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           E  +R  D +   +++    + + +G+      I  D TE+++  + +   A
Sbjct: 294 ELNIRCKDGRLFCVLLTSTALQSEDGEFRGSRCILVDYTERRRHEKELQQAA 345


>gi|229082515|ref|ZP_04214978.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228700947|gb|EEL53470.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
          Length = 909

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|114561776|ref|YP_749289.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114333069|gb|ABI70451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1144

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 148/555 (26%), Positives = 262/555 (47%), Gaps = 11/555 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465
             S A+  S   +   +I             I G A+  + G   + L   +    +  ++
Sbjct: 582  LSQAIEQSPISMILTNIDSKIEYVNSAFEKISGYAASEVIGQSASMLKSGLTP--KSLYK 639

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             + D+         Q E + R  +    W    I P+ ++ G    Y+ +  D+T+ K+ 
Sbjct: 640  QLWDAISTG--HAWQGELQNRKKNGDIFWEHAHIAPIFDNAGVTKHYLALKQDVTQYKQQ 697

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E IL  A  D+LTG+PNR   LDRL+ +L  +    N    V+ +D+D +KK+ND +G 
Sbjct: 698  EEKILHQAHYDSLTGLPNRLLSLDRLSQMLKDAHRAKN-NVAVLFLDLDDFKKVNDTMGH 756

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +VGD++L+    R+   ++  D++ RL G+ F IIL + N  +++   A  + +    P 
Sbjct: 757  SVGDELLIQAAVRLKNTIRESDVVGRLGGDEFIIILSNINEPIEVEIIASKLLEQFYQPF 816

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
             L  RE+  T SIG A +        E+L+ A+ AMYH+K RG N    +          
Sbjct: 817  RLENRELVSTISIGIALYPLDSEDPKELLRQADSAMYHSKDRGRNTYNFYTHQMNHDMDR 876

Query: 706  MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             +  +E L  A++  E  + + P + +   +I+G EAL++W++   G ++  EF+ IAE+
Sbjct: 877  RLKIEEQLRSALKQKEFEVYFQPFVDIKSRKIIGAEALLRWNNALLGQVTPDEFIPIAEQ 936

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I +I  +++E        W+ Q   P   I IN++ K   +N   + +   + K   
Sbjct: 937  TGLIVSIGQYVIEVAFATAKKWQ-QTYNPYFKIAINVSPKQFRENTFVDMLNIQLDKHQI 995

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              S I+L  +E V++ +       L  +  IG+S+++DDFGT  S LSYL   PF+T+K 
Sbjct: 996  HASTIELEITEGVLLSSDAVIDSNLISINDIGVSISMDDFGTGYSSLSYLRSYPFNTLKV 1055

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +         + ++ + I M   +  T++A+ +  E     L  + CDY Q    +
Sbjct: 1056 DKSFINDITVDPGDLELVGAAIAMGHGLNLTVVAEGVETEEQYHLLNALKCDYGQGYLFS 1115

Query: 942  SPLGFNSILKLLKER 956
             PL   +   LL ++
Sbjct: 1116 KPLPQAAFEALLLKQ 1130



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 79/274 (28%), Gaps = 20/274 (7%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAI---LFCMSFYYPMVTASIARITLASIVLYYTYFIIY 328
           +         +  + F  I  +       C   Y       +  + +         +  +
Sbjct: 62  FFDTRWVLLSLSGLFFGFIPTLIATILAACFRLYQGGAGLYVGTLIIFISSAIGLGWRYW 121

Query: 329 HGMKGYERAVLLIPAW-----ILIFIWFIGLWMAITKRLDNDIIQPALVG---GLVLIVI 380
                 +     + A      I + +  + + +A    +   I          G +LI +
Sbjct: 122 MKSANKQPNWQNLLAMGFVVEIGVLLCLLLMPVADKYDIILTISPTLFTVYTCGTMLIGL 181

Query: 381 LIGFTVIQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           L+     +  ++         + ++       + G  DI++        +      +  L
Sbjct: 182 LLKQHQQRQQISQELHHHKNLLETEKNLLQSIIDGIPDIIFYKSADGVYLGCNKAFSEAL 241

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L    +       L      DR    + +  D FV         E  +   D   H   
Sbjct: 242 KLNPEDIKHKTDYDLF-----DRQQADSFIKADRFVLQENQPWMDEEWITTPDGIAHIFK 296

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               P  +S+GDI   +G++ D+ ++K   E + 
Sbjct: 297 THKTPFVDSSGDIQGIVGVSRDMADRKLIEEQLR 330



 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 75/233 (32%), Gaps = 34/233 (14%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGL 440
           + F  I+ +       Q +     +          I    +D  R  +        + G 
Sbjct: 433 MFFCFIKDISQRINAEQKLLLSESKFRHIFENIPSISVQGYDKNRSVIFWNQASEKLYGY 492

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     L  I    R++    +++++      L  E  ++ AD     +     
Sbjct: 493 TKEQALGKKLEDL-IIPPPYREHVINNVNAWINEGVPILAEELLLQRADGSNVAVYSSHT 551

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            ++N++ +   Y  I  D++ QKK+ E          LT           L+  ++ S  
Sbjct: 552 LINNTDNEAEMY-CIDIDLSAQKKAEEQ--------ALT-----------LSQAIEQS-- 589

Query: 561 DDNLRPTVMVIDID-KYKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDI 608
                 ++++ +ID K + +N       G A   +V+      +   L    +
Sbjct: 590 ----PISMILTNIDSKIEYVNSAFEKISGYAAS-EVIGQSASMLKSGLTPKSL 637



 Score = 41.5 bits (96), Expect = 0.81,   Method: Composition-based stats.
 Identities = 8/145 (5%), Positives = 35/145 (24%), Gaps = 7/145 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +       + +          +  + D      +    + +    A + G    
Sbjct: 313 VGVSRDMADRKLIEEQLRRSESTYRNIISTAQDGFVIVSVDGKIIESNQSFADMTGYTLD 372

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       +      +       + +    +      +   +        + + I    
Sbjct: 373 ELFNKPIGDIET--SENHQFSTQNIITAKQVKAIHYTSQH--KHKLGYLFHVEVNISFWD 428

Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528
             +G    +     DI+++  + + 
Sbjct: 429 GDDG---MFFCFIKDISQRINAEQK 450


>gi|71906691|ref|YP_284278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846312|gb|AAZ45808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 585

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 139/561 (24%), Positives = 258/561 (45%), Gaps = 14/561 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +          +  +   ++   +   R     P +  + G ++  +   +   L  I 
Sbjct: 27  AMTEQETMFRSTMEAAQVGIFV--LQNQRFKYVNPFLVGMFGYSAEELLEQM-GPLDLIL 83

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                     +        G   YE      D     +++   P  +  G +   +G   
Sbjct: 84  PEQHAFVIEQMQLRAAGVLGH-NYELTGLRKDGSTLPIMVLGSP--SVIGGLPASVGTVL 140

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+ QK + + I   A  D LTG+PNR+   +R   +L  +   +     V+ +D+D +K
Sbjct: 141 DISAQKAAEQRIRELADYDVLTGLPNRRLLRERFEQLLAAAER-EKSEIAVIFLDLDHFK 199

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND LG +VGD++L  + RR+  +++  D LARL G+ F   +   + +  +   A  +
Sbjct: 200 RVNDSLGHSVGDELLCEVARRLDSVVRRIDTLARLGGDEFIFAMPGFHTAAAVE-VARRL 258

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  + P  +   E+TVT S+G + +         +L+NA+ AMY AK  G N  + +  
Sbjct: 259 VEVFSRPFEVAGHELTVTPSLGISIYPHDGRDLETLLRNADTAMYRAKEMGRNAFQFYSS 318

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +  DR++++ +L  A+  +E  L Y P++ L    I+G+EALI+W HP+ G I   
Sbjct: 319 EMNTTTLDRLLMESNLRRALVQNEFILHYQPLVNLETGLIIGVEALIRWLHPELGLIMPD 378

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  I  ++L    R   +W D    PPI + +N+A          E + 
Sbjct: 379 RFIHVAEETGLINPIGDWVLCEACRQAKAWCDAGL-PPICMAVNVAPVQFRQAGFVEMVA 437

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++ +    SR++L  +E  VM + + +   L  L ++G+ L+LDDFGT  S L+YL  
Sbjct: 438 GALATSGLDASRLELELTERTVMHDADINMGTLSALHRMGVELSLDDFGTGYSSLAYLKR 497

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P   +K + S +          AI  +I+ M +++  T++A+ +     +  L +MGCD
Sbjct: 498 FPVGKLKIDRSFVNDLETDPDDWAIASTIVSMGRSLRMTVLAEGVEKVEQLALLRKMGCD 557

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q  + + P+  + +  +L+
Sbjct: 558 MAQGYYFSRPMSADGMADMLR 578


>gi|294013319|ref|YP_003546779.1| putative diguanylate cyclase/phosphodiesterase [Sphingobium
           japonicum UT26S]
 gi|292676649|dbj|BAI98167.1| putative diguanylate cyclase/phosphodiesterase [Sphingobium
           japonicum UT26S]
          Length = 765

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 164/756 (21%), Positives = 312/756 (41%), Gaps = 37/756 (4%)

Query: 226 WVVLGYISIDFG--FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
             +L      FG  FL ++         +    + + LS ++   L       R +    
Sbjct: 26  VALLRQAMNLFGLLFLWQVFGHHGSAPGLMLWSAALLLSMAVGGILR-----RRRNGAAV 80

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
                 +     L     +   + +  A    A  V ++T             A   + A
Sbjct: 81  SAADLRVHGFTGLLHGLIWAACMMSLSAGHGAAQSVAHWTLISCIMVCGAISYAPTPLAA 140

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
              +    +GL      R    ++  A    L L+V    +   +        S  +   
Sbjct: 141 TGFLLPCIVGLGALFDPRDQAPLLALATSYALSLLVGCFLYA--RTFARQHSASVQLEEK 198

Query: 404 GERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-------NW 452
            E  SL +     G+ D +W  D  R     +P +A +LG A     G +         W
Sbjct: 199 SEVVSLLLREYEHGASDWLWQTDPARRLSGVSPRLAEMLGRAPAEAEGVLLVELLAGNAW 258

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +   +       L     +    L  E      D +  W  +   P  +  G  L +
Sbjct: 259 ESGLFPTELHELADHLKRRESFSNIVLPVEL-----DGKVRWWELSASPRYDEGGAFLGF 313

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT--VMV 570
            G+ +DITEQ++S E I   A  D LTG+PNR    D L   +               ++
Sbjct: 314 RGVGSDITEQRESAERIAQLARFDPLTGLPNRTHLRDVLDQAMGGGMAGAARAGGCAFLM 373

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D++K +ND LG  +GD +L  + RR+  +    +   R+ G+ F +++     +  +
Sbjct: 374 IDLDRFKAVNDTLGHQIGDKLLTQVARRLRHICSGAEFCGRIGGDEFAVVIPQLGETHGV 433

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  +   ++ P  + E  + V AS+G A        S  ++++A+LA+Y AK  GG 
Sbjct: 434 DKLAARIINGLSAPYQVEEHTLYVGASVGSAVSPQDGRESEALIRSADLALYRAKGDGGG 493

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              ++     +   +R  ++  L  A+E  +L++++ P++      +VG EAL++W HP 
Sbjct: 494 VHCAYEPQLHAQAEERRQLELALRDALEKKQLHVLFQPVVEAQAGTVVGFEALVRWTHPD 553

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS ++F+ +AEE  +I  I  ++L    ++   W +      + I +N++++ L   
Sbjct: 554 MGPISPAKFIPVAEEARLIGPIGEWVLRTACKEAACWPE-----DVRIAVNVSAEQLAHP 608

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                + + ++++     R++L  +ESV +     +  +L +LR +G+ L+LDDFGT  S
Sbjct: 609 SFVGAVVSALAQSGLEARRLELEVTESVFVNADTGALKILDQLRGLGVRLSLDDFGTGYS 668

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            L YL    FDT+K + S + G++  +    AI+R+++ +A ++     A+ +  E ++ 
Sbjct: 669 SLGYLSRTRFDTIKIDRSFVVGASNNKAESLAIIRAVVTLADSLGMATTAEGVETEAELA 728

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +  +GC  +Q  +   P+  +    L        +
Sbjct: 729 MVRGLGCRKVQGFYFGRPMPASDAAALFPAHQARAR 764


>gi|307822699|ref|ZP_07652930.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736303|gb|EFO07149.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 982

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 153/769 (19%), Positives = 294/769 (38%), Gaps = 19/769 (2%)

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
           +FL + +   R         +       +              +   L         LS 
Sbjct: 220 MFLFVTWAAVRMGPHALVIILVMAATQGLFGAQQGTGFFAEDIAKTYLTSYWSFMAILSV 279

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
           + +     ++   R    +   +      I      +         I ++   + ++   
Sbjct: 280 TGMTLATYFVARRRAEQTL-TASEGYQRAIFNATPDAMLISDKRGIITQVNRQAELMLGY 338

Query: 324 YFI--IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
                +   ++             L   +                 +        + + +
Sbjct: 339 KLGELVGQSIEVLVPEGFRPNHPELHAKYVAAPVARPLGVGRTVQARRKDGSSFDVDISV 398

Query: 382 IGFTVIQHVLATGYFSQGIF--SDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATI 437
                 Q +                    +A +   S + +   D     +         
Sbjct: 399 SPIKTEQGLFFASALRDVTLRKQADAHLRVAAIAFESNEPMVITDADNIILQVNRAFTES 458

Query: 438 LGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            G +     G   + L    H      F   +   +    G  Q E   R  + + +   
Sbjct: 459 TGYSKEEAVGQKISLLKSGRH---GAAFYAAMWETIK-STGTWQGEIWDRRKNGEIYPKW 514

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + I  +   +G I  Y+G   DITE+K + E I   AF D LT +PNR+   +RL   +D
Sbjct: 515 LIISVVKGDDGAITHYVGTHIDITERKAAEEQIKQLAFFDPLTQLPNRRLLQERLKHGID 574

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
           +   D   +  ++++D+D++K +ND LG   GD++L  +  RI   L+  D++ARL G+ 
Sbjct: 575 VERRDGK-QLALLMLDLDRFKSVNDSLGHLAGDELLQQVAARITARLRDVDMVARLGGDE 633

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLK 675
           F ++L    +    A  A  +   ++ P  +    +I ++ASIG + +       + ++ 
Sbjct: 634 FIVLLEDIAHPEDAARVAEEIIADLSKPFWVEQGEDIQISASIGISLYPQHGDNPALLMD 693

Query: 676 NAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ A+Y AK  G      F         +R+ ++  L  A+E  +L + Y P + ++  
Sbjct: 694 NADAALYQAKDAGRGCFAYFSEDLTLAARERIALESRLRRAIEQQDLRVFYQPQVDIISG 753

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I+G EAL++W     G I    F+ IAEE  +I  I  ++L    R    W D     P
Sbjct: 754 RIIGAEALVRWQDSVEGLIPPIRFIPIAEETGLILVIGEWVLRETCRQGRQWLDAGL-LP 812

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++      +++C+ +  ++S T +  S+++L  +ES +M N   +  +L  LR 
Sbjct: 813 LTLAVNVSPHQFRRSDICDLVATVLSDTGFPASQLELEITESGLMDNQGNATEILNCLRG 872

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
            GI L +DDFGT  S L+ L + P D +K + S +      +  + I  +II M   +  
Sbjct: 873 QGIRLAIDDFGTGYSSLACLKHFPLDLLKIDKSFIDDIPHLQDDMEIASTIIAMGHILGF 932

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            ++A+ +     +  L   GCD  Q    + P+     ++LL+ +  LV
Sbjct: 933 KVLAEGVETPEQLMFLQEKGCDMYQGYIKSCPVPAEEFVELLRNQQRLV 981


>gi|95929074|ref|ZP_01311819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134975|gb|EAT16629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 920

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 142/593 (23%), Positives = 289/593 (48%), Gaps = 14/593 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIV 424
           +   +      I++++ +   Q +    Y+ Q +      +R       + D+V   D  
Sbjct: 331 VTAIMFLAAASIMMMLWWRRQQALYQASYYQQQLQHQMLSQRFDNLTRFANDLVLLVDAQ 390

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +          G     +       L  +   + D F   L          +++E  
Sbjct: 391 GQIIDANERALDTYGYPEDELKTFKLKDLCDLSQQECDLFWEQLKV-----EQGVRFETM 445

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
               D     + I  R +    G +++   I  DI+E+K + + ++  A+ D LTG+PNR
Sbjct: 446 QFRQDGSTFPVEINARWIDLDRGHLVQ--AIIRDISERKAAEDQLVHQAYHDPLTGLPNR 503

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               DRL   +  +      +  ++++D+D++K IND LG AVGD +L +L +R+ E L+
Sbjct: 504 LLISDRLKLAIAKARRH-KTQAVLLLLDLDRFKNINDTLGHAVGDRILTTLAQRMQETLR 562

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +AR  G+ F ++L        +   A  +   ++ P+ +   E+ +T S+G +   
Sbjct: 563 DTDTVARFGGDEFLVLLEDIRELSDVVSLAQKLSDLVSQPVLIDGEEMCLTTSVGISVAP 622

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722
              I   ++++ A+ AMY AK +G N+ + +          R+ ++ +L  A++  E+ +
Sbjct: 623 EDSIEVDQLIRFADTAMYRAKEKGRNNFQFYTPDMNAHAGRRLQLENNLRKALQRQEMVV 682

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + +    I+G EAL++W HP+ G IS ++F+ +AEE  +I+ I  + LE+  +  
Sbjct: 683 YYQPQVEMDSGRIIGSEALLRWMHPEHGLISPNDFIPLAEETGVIEEIGAWALEQACQQT 742

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           ++W+   N P + I +N++++   +  L + ++ +++KT  +   +++  +ES++M + +
Sbjct: 743 VAWQK--NHPELKIAVNLSARQFRNENLVDDIEQILNKTGLAARHLEMELTESLLMEDVD 800

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902
            +  L+ RL K+GI+L +DDFGT  S LS+L   P D +K + S +   +     I R+I
Sbjct: 801 VAIDLMNRLTKLGITLAIDDFGTGYSSLSHLNRFPIDKLKIDRSFVNSMSLDNNGIARTI 860

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I + + +  +IIA+ +      + L ++GC   Q  + + P+  N+  ++L++
Sbjct: 861 ITLGRTLGLSIIAEGVENNEQRQLLLQLGCPQAQGYYFSRPVHDNAFSEMLEK 913


>gi|229591627|ref|YP_002873746.1| putative sensory box GGDEF/EAL domain-containing protein [Pseudomonas
            fluorescens SBW25]
 gi|229363493|emb|CAY50722.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
            fluorescens SBW25]
          Length = 1100

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 147/586 (25%), Positives = 270/586 (46%), Gaps = 26/586 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             T ++ +         + +  E+ + A   S D +   +    R V        + G  +
Sbjct: 518  VTTLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTGYRA 577

Query: 443  GSMHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                G     I  W         +N R+ L + +  +      E            + + 
Sbjct: 578  EEAIGLTLYQIGIWAD-------ENQRSALLAELQIKGRIHHLEMLWHNKRGDLLAVEVS 630

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + P++    +    +  A D++  K +   I   A+ D LT +PNR   +DRL+  + L 
Sbjct: 631  VEPITL--NETPCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 688

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F 
Sbjct: 689  KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFV 747

Query: 619  IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L   + S      ++ + A  +R+ ++ P+ L    + VT SIG A       T +++
Sbjct: 748  VLLSGLDGSRMEVSAQVQELADTLRELLSEPMFLDGHRLQVTPSIGVALIPDHGSTPADL 807

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            LK A++A+Y AK  G N  + F  S     S+R+ ++ DL LA+   E  + Y P +   
Sbjct: 808  LKRADIALYRAKDSGRNTTQMFHNSMQKTASERLRMETDLRLALSRGEFSVHYQPQVDAR 867

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              +IVG EAL++W HP+ G  S +EF+ + E+  +I  +  ++L+           +  +
Sbjct: 868  GNKIVGAEALVRWQHPQLGAQSPAEFIKVLEDSGLILEVGTWILDEACAAFQQLIAEGLV 927

Query: 792  PPIFIL--INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P+     +NI+ +    N+  E ++  + +     S +KL  +E +V+ N + +   + 
Sbjct: 928  DPLNFSLCVNISPRQFRQNDFVERVERSLKQHQLPFSLLKLEITEGIVIQNLDDTISKMR 987

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            RL+K+G+S  +DDFGT  S L+YL  +P D +K + S +  +        I+R+I+ MA+
Sbjct: 988  RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMAR 1047

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++   +IA+ +  +  +  L  +GC   Q    + PL      + L
Sbjct: 1048 SLNLEVIAEGVETQEQLAFLQGLGCHLYQGYLHSRPLPMLGFRERL 1093



 Score =  111 bits (277), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 142/471 (30%), Gaps = 62/471 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +            Q +    ER  LA+  +    WDW I    +  +   A + GL   
Sbjct: 264 LSTFLDTTERKNAEQALKDSQERLDLALDSAQLGTWDWHIPTGMLYGSARAAQLHGLPPE 323

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             H     +   +   +R+N R    +      G  Q  +RV   D    ++  R R   
Sbjct: 324 PFHESFDAFFEGMPGEERENMRNAYRTLREGPAGNYQLTYRVPMEDGSSRYLESRARLYR 383

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G  LR  G   DIT+Q +  +          LT      +  ++  ++   S     
Sbjct: 384 DAQGAPLRMAGTLLDITDQVEREQR---------LT------ASEEKFASLFQASPD--- 425

Query: 564 LRPTVMVIDIDKYKKIN----DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               V  +D   + +IN       G     +V+     +IG   +    L R+       
Sbjct: 426 -PICVTCLDGGAFIEINPAFTQTFGWTAA-EVIDKSAEQIGLWDESSKRLERIE-----R 478

Query: 620 ILISENNSLKIADFAIAMRKSIAMPIN-----LLEREITVTA---SIGFASWTSSKITSS 671
           ++  +  +           +S+   I+     + ++   VT            ++   S 
Sbjct: 479 VIREQTLNNVAIMVHHKNGQSLTCVISSRLIKVGDQPCIVTTLRDITQQQRSEAALKASE 538

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           E    A  +   A          +   +    R+        A E   L L    I    
Sbjct: 539 EKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTG----YRAEEAIGLTLYQIGIWADE 594

Query: 732 D------------EEIVGLEALIQWDHPKWGNISSSEFMLIAEELC--MIKAINLFMLER 777
           +              I  LE L          +  S   +   E    ++ A ++ +L+ 
Sbjct: 595 NQRSALLAELQIKGRIHHLEMLWHNKRGDLLAVEVSVEPITLNETPCLLLTARDVSLLKN 654

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
               I        +       N+ ++ LL + L + + AL+ +     + +
Sbjct: 655 AQAQIRHLAYHDPLT------NLPNRALLMDRLSQQI-ALLKRHNLRGALL 698



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 46/156 (29%), Gaps = 13/156 (8%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W W+I   R++ +     + G           ++L  +   DR        + +      
Sbjct: 46  WCWEIDTGRISWSRGTQALFGFDPRQPLPKDLDYLDLLAPQDRGRVIRAFHAVLAGEPFE 105

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK------SLEGILCN 532
                 ++  D   HW+ I      +  G   R IG+  + T Q++        E     
Sbjct: 106 QAMHHHIQWPDGTHHWLEINGSLAPDKAGR-RRMIGVIRETTRQREREHALSHSEKRFAT 164

Query: 533 AFQDNLTGI-PNRQSFLDRLTTILDLSATDDNLRPT 567
            F      + PN      +   ++  +     +   
Sbjct: 165 LFH-----LCPNMVLLTRQADGLISEANQYFEMLFG 195


>gi|224824518|ref|ZP_03697625.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224603011|gb|EEG09187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 943

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 160/585 (27%), Positives = 275/585 (47%), Gaps = 12/585 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDI 434
           + +   F  I  V              ER  LA      + + +   D  +   +     
Sbjct: 352 VAMRDSFGRINAVWRMVRDISEKRVAEERMQLAAKVFENTVEGIMITDADKRIRSVNRAF 411

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           + I G     + G   + L     +  + F   + S +    G  Q E   R  + + + 
Sbjct: 412 SQITGFGQQEVLGQKPDMLSSGRHD--ETFYEAMWSAI-NEHGSWQGELWNRRKNGEVYP 468

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             + I  + N+ G+I  Y+ I +D++E+K + E I   A  D LTG+PNR    DR+   
Sbjct: 469 EWLAISAVRNAVGEITHYVAIFSDLSERKAADERIQFLAHFDVLTGLPNRAHIQDRVELA 528

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +  D N R  ++++D+D++K IN+ LG + GD +L  L  RI   L   +++AR  G
Sbjct: 529 IQNATRD-NERLALLLLDLDRFKTINESLGHSAGDALLQVLAERIRSTLLTGEVVARQGG 587

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L    +    A  A  +R+ +  P+ L    I++T SIG + +         ++
Sbjct: 588 DEFIVLLPLIADPGSAALAAERIREVLEPPVELFNHSISITPSIGISVFPDDGRDFETLV 647

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +NA+ AMYHAK  G N  + +    ++   + + I+  L  A++  E  L Y P + L  
Sbjct: 648 RNADAAMYHAKSAGRNSYKFYTADLNARAREILEIESQLRYALDRDEFVLHYQPQVDLKT 707

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            EI+G EALI+W HP+ G +    F+ +AEE   I  I  ++++   R +  WR Q   P
Sbjct: 708 GEIIGAEALIRWQHPELGLLGPVRFIEVAEERGFIVQIGNWVIQEACRQLAQWRRQGL-P 766

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I + +N+++      +L   +Q  +S      S + +  +ESV+M + E +   + R++
Sbjct: 767 RISLAVNLSTLQFRQQDLAVHLQRALSAHGLVGSDLDVEVTESVIMDDVETTIHTIDRIK 826

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            +G+ L++DDFGT  S LSYL     D +K + S +          AI R+II MAKN+ 
Sbjct: 827 SMGLQLSIDDFGTGYSSLSYLKRFKADKLKIDRSFVRDIPMDADDSAIARAIINMAKNLN 886

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            T+IA+ +      K L R GC   Q   +A P+      +LL++
Sbjct: 887 MTVIAEGVETIEQWKFLDREGCHAAQGYLLAKPVPAKEFERLLEK 931



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 2/167 (1%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
              A +  L+  +      +   +         +     +       + D +    +   
Sbjct: 221 WTRAELKRLIDELRAKTLALESDIARRREVEDALRRSENKYRELFWSNLDGIVISSLDGQ 280

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +   P    ++  +   +   ++N+   I        R  LD+ V       ++E    
Sbjct: 281 VIDANPAFLNLMCYSLDQL--KLQNFWSLIAPESEGMERFNLDNKVLRFGYCDEFEASYI 338

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                   + ++   M +S G I     +  DI+E++ + E +   A
Sbjct: 339 NRFGNVVPVSVKTVAMRDSFGRINAVWRMVRDISEKRVAEERMQLAA 385


>gi|206970092|ref|ZP_03231045.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
 gi|206734669|gb|EDZ51838.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
          Length = 909

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 173/868 (19%), Positives = 345/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             +I   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYIIYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L  I            +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLFSITFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLIAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAITRAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L+  GI  ++DDFGT  S 
Sbjct: 756 LIENISQILNDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKDYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|119493194|ref|ZP_01624069.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
 gi|119452759|gb|EAW33936.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
          Length = 990

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/579 (25%), Positives = 263/579 (45%), Gaps = 28/579 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +         +    ER    V    D +   +I             +   +  
Sbjct: 431 IGIQKDISERKRSEANLKKSQERLKKIVSAISDALIVININGLIKFVNLAAEVLFDRSES 490

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G       ++   D+                    E  +     +  ++ IR     
Sbjct: 491 FLIGYPIG--NFLLEEDK-------------------IELTIVQPKGKLVFVEIR-SVEI 528

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G+    +    DITE+K++ E +  +AF D LT +PNR  F+D+L   +  + T + 
Sbjct: 529 DWEGEKATLV-SLRDITERKQAEEQLRHSAFYDALTNLPNRALFMDQLEQAITQTKTLNQ 587

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D +K +N+ LG  +GD +L+++  R+   L+  DILARL G+ F  +L  
Sbjct: 588 TSFAVVFLDLDSFKFVNESLGHIIGDQLLIAIADRLETCLRSGDILARLGGDEFTFLLKD 647

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                +       ++  +  P +L   ++   AS+G A  +       E+L++A++AMY 
Sbjct: 648 IEQVSQAITVVQNIQHKLTFPFDLSSHQLFSNASLGIALISPDYTYPEEVLRDADIAMYS 707

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK RG N    F          R+ ++ DL  A E  +  + Y PI+ L   +IVG EAL
Sbjct: 708 AKQRGKNCYAIFNSQMRKKSQHRLQLETDLRYAWEQQDFLVYYQPIVCLQTHQIVGFEAL 767

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINI 800
           I+W H   G IS  +F+ +AEE  +I  +  ++L+     + +W         + + +N+
Sbjct: 768 IRWQHLTKGLISPYQFIPVAEETGLIIELGSWVLKTACHQLKAWTRTNPRMQHLKMSVNL 827

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +S+ + D    + +  ++++T  +P  +KL  +ES++M NPE  +  L ++R   I L+L
Sbjct: 828 SSRQIQDYNFVKKINQVMTETQINPQNLKLEITESILMENPEDVKEKLIQIRSQNIQLSL 887

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P +T+K + S +       +  AI+++II +A  +   +IA+ I
Sbjct: 888 DDFGTGYSSLSYLHNFPINTLKIDRSFIVRMNLNPENTAIVQAIITLAHTLGMDVIAEGI 947

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                +K L  + C+Y Q    + P+      KLL+ + 
Sbjct: 948 ETVEHLKHLQALECEYGQGYLFSKPVSAIEADKLLESQQ 986



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S D+V   D         P   +ILG  +G +      W+ Y+H +D++      +  + 
Sbjct: 38  SPDLVGITDFNGYFKEVNPAFESILGYTAGQLLAQP--WIEYVHPDDQNATLQAFEQLLN 95

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                + +E R R  DN + ++      +++   +++  +    DIT QK +   +   
Sbjct: 96  QE-PIINFENRFRCQDNSYKYLSWTA--IADLENNLVYAVA--RDITMQKHTETQLRWR 149



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 31/207 (14%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDI 434
           I  L     I  +    + S+      ER   A+  + + +   D        +     +
Sbjct: 299 INFLQAIANILAMAVERHRSEEYLHLLER---AINSANNGIIITDPHQPDNPIIYFNTAV 355

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
               G  +  + G    +L      DR+     +       +       R    D    W
Sbjct: 356 EHSTGYPASEIMGKNCRFLQG---KDRNQPEINIIRAAISAKKECNVVLRNYRKDGSLFW 412

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             + I P+ N+ G +  +IGI  DI+E+K+S                 N +   +RL  I
Sbjct: 413 NELFISPVFNNKGKLTNFIGIQKDISERKRSE---------------ANLKKSQERLKKI 457

Query: 555 LDLSATDDNLRPTVMVIDIDKY-KKIN 580
           +   +        ++VI+I+   K +N
Sbjct: 458 VSAISD------ALIVININGLIKFVN 478


>gi|56477067|ref|YP_158656.1| putative sensory box/GGDEF family protein [Aromatoleum aromaticum
           EbN1]
 gi|56313110|emb|CAI07755.1| putative sensory box/GGDEF family protein [Aromatoleum aromaticum
           EbN1]
          Length = 698

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 146/551 (26%), Positives = 257/551 (46%), Gaps = 13/551 (2%)

Query: 410 AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           A+  S + V+  D        +   P    ILG A GS  G        +   +  N  T
Sbjct: 147 AIESSVNGVFIADASCADYPLIYVNPAFERILGFAPGSALGRACICRDGV-PGEVCNGYT 205

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +            +   +     + + + P+ N +GD+  +IG+ ND+T +  + 
Sbjct: 206 DICQAISRGTEGYTV-LNLERENGAQQSVELFLAPVENESGDVTHFIGVLNDVTARTHAE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + ++  A  D LTG+PNR    DR+T  +  S         VM +D+D++K +ND  G A
Sbjct: 265 KRLIHQASHDALTGLPNRNLLNDRITHAIARSR---GRLTAVMFLDLDRFKLVNDSYGHA 321

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD ++  +  R+   L+  D +ARL G+ F ++L    +    A  A  +R  ++  + 
Sbjct: 322 VGDALIREVANRVSACLRAGDTVARLGGDEFVVLLEDLASIEDAARLAAKLRDRLSESVR 381

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +   E+ ++ASIG A           +LKNA++AMY AK RG N+   +        R  
Sbjct: 382 IGSLELPLSASIGVALAPRDGRDPEMLLKNADIAMYRAKERGRNNYCFYGPEMDHHARRR 441

Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +  + +L  A+   EL   Y P + L    + G EAL++W HP+   +   EF+ +AEE 
Sbjct: 442 LTVESELRRALAGGELEAHYQPQVDLATGALTGAEALVRWRHPERCLLLPGEFIAVAEET 501

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +   +L    R    WR+    P + + +N++      ++L E +  ++++T   
Sbjct: 502 GLIVPLGEQVLRAACRQSTRWREA-GRPDLKVAVNLSGHQFRQHDLVEQVCDILAETGAH 560

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            ++++L  +ESV M + + S   L  LR+ GI+L +DDFGT  S LSYL   P DT+K +
Sbjct: 561 AAQLELEITESVAMADADGSVATLAGLRRQGIALAIDDFGTGYSSLSYLKRFPIDTLKID 620

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S + G        AI+++II MA+++  +++A+ +      + L   GC   Q      
Sbjct: 621 RSFIQGIPADGDDTAIVQAIIAMARSLRLSLLAEGVETPAQREFLVAQGCRSGQGFLFGR 680

Query: 943 PLGFNSILKLL 953
            +       ++
Sbjct: 681 AMPAEDFHHII 691


>gi|94265540|ref|ZP_01289287.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93453940|gb|EAT04290.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 940

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 143/587 (24%), Positives = 253/587 (43%), Gaps = 17/587 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ +++              E  +  +    +     D     V+     A   G  
Sbjct: 347 MLESLAEYLAPLLAARLESRRAEELVARILETIDEGFIIIDHEFKIVSANRAYAESAGYP 406

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498
              + G     +   H  D+  +    D  V +                A  +  ++  +
Sbjct: 407 LAEIIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPHTAIHTHYTAAGEPLYVETK 464

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             P+  +  G + R I +  DIT++K   + I   AF D LT +PNR+ F DRL   +  
Sbjct: 465 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAISA 524

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           SA        V+ +D+D +K +ND  G  +GD +L    +RI E ++  D ++R  G+ F
Sbjct: 525 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDIGDLLLTMAAKRIQETVREDDTVSRQGGDEF 583

Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            ++L + +     A       A  +R ++  P +L   E  +  SIG   +     +  E
Sbjct: 584 MVLLNNLSPDRHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGIGLFMGHDTSVDE 643

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +LK A+ AMY AK+ G N V  F             +  DL  A+   +  L Y P    
Sbjct: 644 LLKRADAAMYQAKNAGRNQVRFFDPEMQAELEQASALVMDLRQAIWQGQFQLHYQPQTA- 702

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EAL++W HP+ G +S  +F+ +AEE  +I AI  ++LE     + +W D   
Sbjct: 703 NDGRIIGAEALLRWTHPERGPVSPMQFIPLAEESNLILAIGRWVLEEACGQLAAWADLPA 762

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++++     E    ++ +++ T   P  +KL  +ES+VM     +   +  
Sbjct: 763 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMHE 822

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR +GI  ++DDFGT  S L+ L  +P + +K + + +          AI+ +II M + 
Sbjct: 823 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 882

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  +IA+ +  +  +  LTR GCD  Q    + P+       LL  
Sbjct: 883 LDFQVIAEGVETKEQLATLTRYGCDAYQGYLFSRPVPAAQFAHLLTS 929



 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 15/173 (8%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A       +    +R       +       D            AT+LG     ++   R 
Sbjct: 51  ALRKSQLELEESRDRYVELYDFAPVGYVTLDPKGRIREANLTAATMLGSERSRLYQ--RG 108

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN--QFHWMIIRIRPMSNSNGDI 509
              ++     + +   L +       R + E  ++  D    F   +   R +   +G+ 
Sbjct: 109 LGRFVSQEYLEPWYLHLAAARKGD-DRQECELLLQRDDKKTSFFAHLASKRVVKEESGE- 166

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                   DIT++K++       A    L       +F +R+  I      ++
Sbjct: 167 RFIHTTLTDITQRKET--ETELAAHHRKL-------AFRNRIAQIFLTRGHEE 210


>gi|315126116|ref|YP_004068119.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913]
 gi|315014629|gb|ADT67967.1| hypothetical protein PSM_A1022 [Pseudoalteromonas sp. SM9913]
          Length = 1000

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 151/581 (25%), Positives = 270/581 (46%), Gaps = 12/581 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           + I    +   L      + I      R S AV  SG  V   D         P +  + 
Sbjct: 419 MTIEIRKLIDGLNQRIIEKEIAEKAANRLSKAVAFSGTGVVITDENFVIEYVNPKMLEMT 478

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             A           L  I  N+       +D  +  R    + +  + A +    W+ + 
Sbjct: 479 DFAESDFLRQP---LLTIIANEMTMLVEDIDIDLRNRN-YWRGDTLIEAQNKPPIWVSLS 534

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + P+    G I  Y+  A DI+  K+S   +   A+ D LTG+ NR  F  +L   + L+
Sbjct: 535 VSPIREDGGKITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLRKSMALA 594

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    +   D+D++K+IND LG   GD +LV +  R+ + L+  D +ARL G+ F 
Sbjct: 595 ER-GRYSFALFYFDLDEFKRINDTLGHDAGDQLLVEVATRLKQRLRAEDTIARLGGDEFA 653

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    +  + ++ A  ++K++  PI L   E+ V+ASIG        +   ++LK+A+
Sbjct: 654 VLLSGIEHQKEASEVADTIQKTLNQPIKLGSNEVIVSASIGITLAPFDSLEEDQLLKHAD 713

Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAMY AK +G N    +        ++R+ ++ +L  A++  +L L Y P +   D  +V
Sbjct: 714 LAMYEAKAKGRNTFHFYSQDLNAAANERLFLENELRHAIKEKQLTLHYQPQVDCRDNSVV 773

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP    I  ++F+ IAE   +I  +  ++L++          Q       +
Sbjct: 774 GYEALLRWFHPTQEFIPPTKFIPIAEATGLIVELGKWVLQQACEFTKRLEQQGRASN--M 831

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++++   D  L   ++ +I +T  +   + L  +ES++MGN E +   L +L+K+GI
Sbjct: 832 SINLSARQFKDASLVPMLKKIIIETQINAKSLHLELTESMLMGNVEAAIDQLHQLKKLGI 891

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           S+++DDFGT  S LSYL   P D +K + S +      +  + I  +II MA+ ++  ++
Sbjct: 892 SISIDDFGTGYSSLSYLKRFPVDILKIDRSFVKDIPEDDNDMEITAAIIAMAQKLKLDVV 951

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +     ++ L    C  +Q  + + P+    I  L  +
Sbjct: 952 AEGVETIEQVEFLQNNNCFIVQGYYFSKPVAEADIPVLFDQ 992


>gi|134299209|ref|YP_001112705.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Desulfotomaculum reducens
           MI-1]
 gi|134051909|gb|ABO49880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfotomaculum reducens MI-1]
          Length = 947

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 130/435 (29%), Positives = 233/435 (53%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  E +   A+ D+LT +PNR  F DRL+  L+ +  + N +  VM +D+D +KK+N
Sbjct: 504 ERKRIEEILRYLAYHDSLTELPNRTLFNDRLSMALNQAHRNKN-KLAVMFLDLDHFKKVN 562

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  + +R  +LL+  D +AR+ G+ F I+L +   +   +  A  +  +
Sbjct: 563 DTLGHDIGDQLLKGIAQRFSKLLRKGDTIARIGGDEFTILLHNITRAENASIVADKIIDT 622

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P  +   E  +T SIG A +      +  +LKNA+ AMY AK  G N+ + +  +  
Sbjct: 623 LANPWIIGNHEFHITTSIGIALYPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTPTMN 682

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++ +L  A++  E  + Y P + +   +IVG+EALI+W HP+ G IS +EF+
Sbjct: 683 AQTLRRFELENNLRRALDRKEFVIYYQPQVEIHTGKIVGVEALIRWQHPQRGMISPAEFI 742

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++L R      +W+D+    P+ + +N++++  L   L + +  ++
Sbjct: 743 PMAEETGLIIPIGEWILRRACAQNKAWQDR-GFSPMRVTVNLSARQFLQPHLPQYISNVL 801

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P  ++L  +ES+ M +   +   L  LRK+GI+L +DDFGT  S L+YL  +P 
Sbjct: 802 EDTGLGPQWLELEITESLAMKDVAFTEKTLIELRKMGITLAIDDFGTGYSSLNYLKRLPI 861

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +         +AI+ +II +  N++  ++A+ +  +  +  L +  CD +Q
Sbjct: 862 DILKIDRSFIHDLNTESDDVAIISAIITLGHNLKMKVVAEGVETKEQLMFLRQQQCDLMQ 921

Query: 937 DSHVASPLGFNSILK 951
                 PL    + +
Sbjct: 922 GYLFTKPLPVRELEQ 936



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLP 454
           ++ I+   ER +  +    D  +  +   +      +   +L      + G    + +  
Sbjct: 211 NKEIYLAHERLNNILESITDAFYAVNHQWEVTYVNTEAEKLLHKKRLDIIGKNIWQEFSE 270

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H      F  IL   +  +  + Q+E+       +  W  I   P  +S+G  +    
Sbjct: 271 MVH----TKFYHILHQVMSEQIYQ-QFEY-FFQPTGK--WFNIHAYP--SSDGLSIY--- 317

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIP-------NRQSFLDRLTTILDLSATDDNLRPT 567
             +DITE K   E +        L+ +        NR +  + L  I+  SA        
Sbjct: 318 -FHDITEYKLVQEKMSLQNQY--LSSLHETTLALMNRLNLDELLKAIVTRSAELSGTDHG 374

Query: 568 VMVIDIDK 575
            + + ID 
Sbjct: 375 FIFL-IDN 381


>gi|228903775|ref|ZP_04067892.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228855864|gb|EEN00407.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 909

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 176/870 (20%), Positives = 353/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSD--LF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  +       Y+   N   L +  ++      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLVTFAFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y  +D  FL   +NL    L +        LSS+LI++      Y +
Sbjct: 161 FTTSYIDIFVQLTYPMVDLLFLLIGINLLFKPLSLLPKKVGALLSSALILYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T +    + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              +L I    +    I    +       + + +++      L+  +        Q  L 
Sbjct: 281 ITLILFILVEYVFGPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+      I
Sbjct: 401 --YYSLIYEEDLEEMINSFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKE-KI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIENYKKKPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 575 VQKMADIIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL +A+ N E +LVY P I     +I+G EALI+W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPIALVNKEFHLVYQPQIDTTTNKIIGAEALIRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   
Sbjct: 695 LLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-ILGYQNLKISVNLSAKEFRQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           ++L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  
Sbjct: 754 DQLIENISQILNNVSVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  N  +K L++
Sbjct: 874 FLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|56460100|ref|YP_155381.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179110|gb|AAV81832.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF and
            EAL domains [Idiomarina loihiensis L2TR]
          Length = 1230

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 139/569 (24%), Positives = 278/569 (48%), Gaps = 19/569 (3%)

Query: 399  GIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + S  ER    + ++    D +  +D    +         I G +   + G +      
Sbjct: 671  RLVSSEERITMLASSITNISDGICIFDRFFRKREVNNAFERISGFSRDQVLGQLLTLE-- 728

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             +     +F   +   V  + G  + E     A+ +   M + +  + + NG++   +  
Sbjct: 729  CYPE---SFVNQIKRSVI-KEGTWRGEITDVKANGEEFLMELTLDAVRDDNGEVSLIVAS 784

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE++ +   +   +  D LTG+PNR  F      +   +     +  T+++ D+D 
Sbjct: 785  FSDITERRHTENELRRLSNTDTLTGLPNRSYF-----QVSHSNLVRKKVSHTLLLFDLDD 839

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +KKIND LG  +GD++L  +  R+ ++ +  D L RL G+ FG+++    +   I D A 
Sbjct: 840  FKKINDSLGHEIGDELLCQVAERLMDIGRRQDTLYRLGGDEFGLLIEDSVDINLIGDLAN 899

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +A P  + + EI + +SIG   +     TS E+L+ A++AMYHAK RGGN  + F
Sbjct: 900  QINLKVAEPYFIEQHEIVIGSSIGIVLYPHDGQTSQELLQKADMAMYHAKQRGGNCYQFF 959

Query: 696  RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              S   +   R+ ++ +L  A+++  + + Y P I +    I GLEAL + +      I+
Sbjct: 960  SQSMNENAVKRLKLENELRAALKSHNIRVYYQPKIEIHSGHIAGLEALARIESEDGSMIN 1019

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             ++F+ +AEE  +I  +   +L    RD+  +      P   I +N++++  + + L   
Sbjct: 1020 PADFIPLAEETGLIIPLGEEVLRLACRDMKRFMACQGSPK-SIAVNLSARQFMQSSLALQ 1078

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++ ++ +    P  ++   +E +VM +PER+  ++  L  +G+ L LDDFGT  S LSYL
Sbjct: 1079 IEQILREEGLHPRHVEFEITEGMVMSDPERAITMMENLSDMGVKLALDDFGTGYSSLSYL 1138

Query: 874  GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               P +++K + + +      +K   ++ SII MA N+   ++A+ +  +  ++ L  + 
Sbjct: 1139 KRFPMNSLKIDKAFVDDITINDKDRNMVASIIAMAHNLGLKVVAEGVETKAQLQTLKSLK 1198

Query: 932  CDYIQDSHVASPLGFNSILKLLKERFPLV 960
            C+YIQ  + A P+  +++++ +++   + 
Sbjct: 1199 CEYIQGFYFAKPMPADALIEFIEQHNEVA 1227



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 57/184 (30%), Gaps = 4/184 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           W       +           A +G +++I++ +    +            +     RQ+ 
Sbjct: 504 WSPSAVAQLDVPAPFWKTPLAWLGYILIIILCLFSYWLYQRQRQAKMRHDLKQ-YRRQAQ 562

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            VL S    W+WD+    +            +   +   +      +H  D    +  L+
Sbjct: 563 GVLSSRYQCWEWDLESGELIRQNIWDNCPAFSIDGIRLGLSGGKSNVHPEDLKRLQKSLE 622

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +       +  +R+      + W++ R +   N+        G  +DI+    S E I
Sbjct: 623 DHLSGESELFECSYRL-DNQGNWLWVLDRGKIQVNNERRT--MFGTLSDISRLVSSEERI 679

Query: 530 LCNA 533
              A
Sbjct: 680 TMLA 683


>gi|83647143|ref|YP_435578.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83635186|gb|ABC31153.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 806

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 155/560 (27%), Positives = 275/560 (49%), Gaps = 7/560 (1%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            ++  + SLA+  S   V   D            + + G    S+ G     L +I  ++
Sbjct: 242 AAEIRKLSLAIEQSPSSVLICDKRWKITYANQKFSQLTGHNLNSIIGKHPKTLTHISPDE 301

Query: 461 RDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             N +   +  +   R G  Q E        +  W  + I P+ +++G+  +Y+ +  DI
Sbjct: 302 SQNEQLWHNIEIQVERAGMWQGEMHSTRHGGEKFWEQVVITPIRDTDGESSQYLILGEDI 361

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + +K+  + +L  A  D LTG+PNR   LDRL   L  S  D   +  +M +D+D +K I
Sbjct: 362 SVRKRYEQQLLRQANYDLLTGLPNRMLALDRLKLALAQSRRD-KSQVGLMFLDLDNFKHI 420

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+  +RRI   L+    +ARL G+ F IIL S  +       A  + +
Sbjct: 421 NDTLGHDNGDTLLIEASRRIASSLRGNSTVARLGGDEFLIILPSLESPEDSELVAARILQ 480

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           + + P  L  +EI V+ SIG A + +    SS +L+ A+ AMY AKH+G +    F    
Sbjct: 481 AFSSPFLLNNQEIFVSTSIGIAIYPTDSENSSTLLQQADAAMYQAKHKGKSAYHRFTPDL 540

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +    +R+ ++  L  A+E  EL L Y PI+   + ++VG EALI+WD+P  G ++  +F
Sbjct: 541 NQQSRERLKLETQLRKAIEQDELLLYYQPIVETANGQLVGAEALIRWDNPLLGLVAPDKF 600

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I +I  ++L    RD+  W +      + I +N++ +   D +  + +   
Sbjct: 601 IPLAEETGLITSIGEWVLHTACRDVKKWHEDTG-LKLTIAVNVSPRQFRDVKFIDTVMKA 659

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +   ++L  +E +++ +   +  +L +L  +G+ L++DDFGT  S LSYL   P
Sbjct: 660 LEVNDLAGEYLELEITERLLLDDSIETFEILHKLDAMGVKLSVDDFGTGYSALSYLKSYP 719

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD++K + S +       +  A++ +II MA ++   +I + +     ++ L   GCDY 
Sbjct: 720 FDSLKIDRSFVKDVNTEAEDAALVTAIITMAHSLGLKVIGEGVEDVAQMQFLRAKGCDYA 779

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  +   P+  +     + E
Sbjct: 780 QGYYYNRPVAESDFCNWISE 799


>gi|254000430|ref|YP_003052493.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylovorus sp. SIP3-4]
 gi|253987109|gb|ACT51966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylovorus sp. SIP3-4]
          Length = 1150

 Score =  534 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 143/578 (24%), Positives = 265/578 (45%), Gaps = 13/578 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             IQ ++ +           E   LA      S + +   D   + +T  P  + + G + 
Sbjct: 575  TIQGIIISSENISARKQAEEELRLAHTVFEHSSEAMLVTDADNNIITINPAFSEMTGYSL 634

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G     L       ++ ++ + ++      G  + E   R    + +   + I  +
Sbjct: 635  EEVIGKNPKILSS-GRQGKEFYQELWNTL--ETSGEWRGEIWNRRKSGEEYAEWLAINNI 691

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             + +G + R + + +DITE+K++   I   A  D LT +PNR+ F DRL   +  S   D
Sbjct: 692  YSEDGKLFRRVALFSDITEKKRADALIWNQANYDLLTQLPNRRLFSDRLQQEIKKSQ-HD 750

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            + +  ++ ID+D++K++ND LG + GD +L+  + RI   LK  D + RL G+ F +I+ 
Sbjct: 751  HSQFALLFIDLDRFKEVNDTLGHSHGDYLLIEASHRIQRHLKETDTVGRLGGDEFTVIIA 810

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +  +   +   A  +  ++A P +L    + ++ASIG   +     TS+E+LKNA+ AMY
Sbjct: 811  NLPDPSVMTLIAQRVLDALAAPYDLEGEIVYLSASIGITVFPEDATTSAELLKNADQAMY 870

Query: 683  HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G N    F        +  + +  DL  A+  ++  + + PI+ L  + I   EA
Sbjct: 871  EAKKNGRNRFSFFTPMMQAMAQARMRMMRDLRNALGLNQFTVYFQPIVDLSSQRIHKAEA 930

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+W HP+ G IS +EF+ +AEE  +I  I  ++ ++ A+ +             + +N 
Sbjct: 931  LIRWQHPELGFISPAEFIPLAEETGLIHEIGDWVFQQSAQLVKQCIPIVGD-DFQVSVNK 989

Query: 801  ASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +     D  +  +     +S    S   I +  +E +++         L   R  G+ + 
Sbjct: 990  SPVQFRDRTQAHQDWMEYLSGLGLSGHNIVVEITEGLLLNADSGISDKLLHFRDAGMQVA 1049

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S LSYL     D +K + S +   +   + +A+  +I  MA  ++  +IA+ 
Sbjct: 1050 IDDFGTGYSSLSYLKKFDIDYLKIDQSFVRNLSGEGEDLALCEAIATMAHKLDLRVIAEG 1109

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +        L ++GCDY Q    + P+     ++LL+ 
Sbjct: 1110 VETTAQRDLLAQIGCDYGQGYLFSRPVPAEEFMQLLER 1147



 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 3/175 (1%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L         +G L L+  ++   ++    +    +  + +  +R    + G+    W+
Sbjct: 301 LLPYSRYIAPALGLLSLVGAIVLLWILLLRRSVKTKTAELANQHQRLQQIIDGTAAGTWE 360

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           WDI        P  A +LG     +      +     H +D +     L++ +       
Sbjct: 361 WDIRSGDCIVNPRWAEMLGYTPDELEPCTADSCRALCHPDDLEQLVQALEAHLRGETDYF 420

Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             E R R  +  + W+  R R    +  G+ L   G   +IT+ K + E  L  A
Sbjct: 421 ASESRRRHKNGHWIWVADRGRVTRRSPQGEALTMSGTRLEITKLKLA-ETTLKQA 474



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               +    E+Q + +  +   V  +D     +  +       G   GS+ G        
Sbjct: 467 AETTLKQAVEQQKMFIQQAPICVAMFDRDMRYLACSNQWQEEFGHQQGSLLGLNHYD--- 523

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H +  + +R      +   R   + +  +R AD Q  W    I P  + +  I   I  
Sbjct: 524 VHPDIPEKWRQAHQRALAGERLEEEEDLWIR-ADGQHLWTRWMITPWMDDSQTIQGIIIS 582

Query: 516 ANDITEQKKSLEGILCNAFQ 535
           + +I+ +K++ E +   A  
Sbjct: 583 SENISARKQAEEELR-LAHT 601


>gi|152993068|ref|YP_001358789.1| hypothetical protein SUN_1481 [Sulfurovum sp. NBC37-1]
 gi|151424929|dbj|BAF72432.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 813

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 140/569 (24%), Positives = 273/569 (47%), Gaps = 19/569 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLP 454
           ++ I    E        S D +   D     +     +  IL   S    ++    + +P
Sbjct: 244 TREINKQKETFETLFEKSSDGILIVDGST-FIECNEKMVEILKYDSKEKLLNMHYTSMVP 302

Query: 455 YIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
               + R+++    +  +  ++ +  Q+E     AD +     + + P+      ++  +
Sbjct: 303 KFQPDGRNSYEKSKEMVLLAKKYKGYQFECVYIRADGEKFLAEVTLTPIMLGKRHVIYTV 362

Query: 514 GIANDITEQKKSLEGI-------LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               DI+++KK+ + +          A  D LTG+PNR  F DRL   L L+      + 
Sbjct: 363 --VRDISDKKKAQQELLKQKDILHHQAHHDALTGLPNRTLFSDRLEHGLKLAERHLG-KL 419

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +  ID+D +K+IND LG  +GD VLV +++R+   ++  D LARL G+ F II+ +  +
Sbjct: 420 ALFFIDLDNFKQINDSLGHQIGDKVLVVVSKRLKAKIRQEDTLARLGGDEFTIIMENFKD 479

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +++  A  ++K +  P+++    + ++ SIG + +      +++++K A+ AMY AK 
Sbjct: 480 VQQVSVLAQKIQKVLNQPMHIEGHTLYISCSIGISFYPQDTQNANDLVKYADAAMYKAKE 539

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N+ + +             ++  L  A++N E  L Y P +      + G+EALI+W
Sbjct: 540 EGRNNFQFYSTEMTTLAYERVVMEASLRQAIKNEEFILYYQPQVNAQTSRMTGMEALIRW 599

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP  G I   +F+ +AEE  +I  I+ +++    + +  W  +   P + + +N++ + 
Sbjct: 600 EHPHLGMILPDKFIPLAEESGLILEIDRWVMRTAMKQVREWYARGLDPGV-LSLNLSMRQ 658

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D    + ++  +    + P  ++   +E  +M  P+ +   LG ++ +GIS+ +DDFG
Sbjct: 659 LKDENFIDVIKEYLHMMSFEPEWLEFEVTEGQMMKRPDDAVASLGEIKSMGISIAIDDFG 718

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L YL  +P   +K + S + G  E R   AI+++ I +AK++  +IIA+ +  E 
Sbjct: 719 TGYSSLGYLKRLPVSRLKIDQSFIHGIPEDRENAAIVKATIALAKSLSLSIIAEGVENEE 778

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + L   GC  +Q  +   P+  + I K
Sbjct: 779 QKEFLLFNGCISMQGYYYGRPMTADQIEK 807


>gi|89093373|ref|ZP_01166322.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89082352|gb|EAR61575.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 932

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 147/612 (24%), Positives = 263/612 (42%), Gaps = 51/612 (8%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +++ +       + +      Q+L +  +   +      R           + G  +G +
Sbjct: 322 IVEDIDQQVKADEALKVILNEQNLILDYAMVGIVFL-KNRSVTRCNQRFEEMFGYNAGEL 380

Query: 446 HGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R W  Y+   D           +   +   Q E  +   D    W  +  + + +
Sbjct: 381 AGSSSRQW--YLTEQDWKAAGKACYKPLSQGKV-FQDEMLLSRKDGSPIWCEVTSKAI-D 436

Query: 505 SNGDILRYIGIANDITEQKKSL-------------------------------------- 526
            +      I I  DITE+K +                                       
Sbjct: 437 PDDLAKGSIWITMDITERKAADVALARAHEDLELRVKERTKELAKANMDLLVEINERKMA 496

Query: 527 -EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D LTG+PNR    +RL   L  + +    +  V+ ID+D++K +ND LG 
Sbjct: 497 EERVKHMALHDALTGLPNRLLLEERLENALSDAKSHQ-WQLAVLFIDLDRFKLVNDTLGH 555

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +LV +  R+ +++   D +ARL G+ F I+L     S +I      ++++    +
Sbjct: 556 HEGDQLLVEVANRLHQVIGANDTVARLGGDEFVIVLNEIAGSTEINGVIEDIQQNFKPAV 615

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            L  +++ VT SIG A +     T  +++KNA+ AMYHAK  G N  + F  S      +
Sbjct: 616 KLALQDMFVTPSIGVAIYPEDGETPVQLMKNADAAMYHAKASGRNCAQYFNRSLDDSLKE 675

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++  L  A++  +  L Y P + +    I+G EALI+W+HP+ G IS   F+ +AEE
Sbjct: 676 RISLENALNQALKLGQFELYYQPQLDVKSNRIIGAEALIRWNHPEKGMISPDAFIPLAEE 735

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L + +  +  WR Q     + + +N+++  +        +  +I +   
Sbjct: 736 SGLIVDIGSWVLHQASSQLAQWRKQGFDQ-LSVSVNLSALQVQKESFAREVADVIREYGV 794

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             + + L  +ES++M N E +   L ++  +GI +++DDFGT  S LSYL   P D +K 
Sbjct: 795 PEACLDLELTESMIMRNAEETIAALDKIHNLGIQISVDDFGTGYSSLSYLKRFPLDKLKI 854

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +           I ++II MA N+   +IA+ +     ++ L   GC+  Q    A
Sbjct: 855 DRSFVQDITVDTDDAMICKTIISMAHNLNLQVIAEGVETNAQLELLRDYGCEQYQGYLFA 914

Query: 942 SPLGFNSILKLL 953
            PL    + + L
Sbjct: 915 KPLPVEQMTEHL 926



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
           G ++  T       I        V    L+    +  +         + +  + Q +   
Sbjct: 160 GHFLTHTTDGPRWHIIQLNKSVAVNESWLVQLREL-DIDQFIQNEHSLRNTLKEQEVIFE 218

Query: 413 GSGDIVWDW----DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            +G  +       D  R  +      A I       + G        ++  D + F  + 
Sbjct: 219 HAGTGICFIKDSQDHERKIIRCNRKFADIYDYRVEELIGQSS---SILYP-DFEAFSELG 274

Query: 469 DSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525
           DS             + +++  D    W  IR   + SN  G  L YI I  DI +Q K+
Sbjct: 275 DSAYPSLMEGTLYTQKMKMKRKDGTLFWTQIRGNIISSNEPG--LGYIWIVEDIDQQVKA 332

Query: 526 LE 527
            E
Sbjct: 333 DE 334


>gi|296284370|ref|ZP_06862368.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum
           JL354]
          Length = 785

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 174/793 (21%), Positives = 337/793 (42%), Gaps = 55/793 (6%)

Query: 200 SLLAIFLTIFYMVNRSSMLIPTFAMA----WVVLGYISIDFGFLSKLVNLPSGELLIWRA 255
             LA+ L +  +       + +          +L  +    G L     L      +  A
Sbjct: 16  LPLAVLLGLRDIAGLDRAFLRSLQYDHLAGLSLLRVVGHSVGALVGFACLIPYAPPLLIA 75

Query: 256 CSEIALSSSLIIFLFMYL-------------HWNRWHAKVGYITFSGIACIAILFCMSFY 302
              + L+  ++ F  +                 NR      ++  + +    +LF  +  
Sbjct: 76  AWIMLLAGGVVYFARLERAMIAADLRKVTDRDVNRHLIGSAWLGLAWMLLPILLFVYADV 135

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
            P +    A I +    +     ++        RAV+ I    ++      L        
Sbjct: 136 -PGMLRGYALIGVIVTGVGTALAVVPL------RAVVFISPACIVATVCFALA------- 181

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIV 418
             DI+  ++ G   L          +  L  G     +    E  SL +        D +
Sbjct: 182 -GDIVMTSIAGIYYLANFAAILRRAESFLRAGVAETAMQQKSETVSLLLREFEENEADWL 240

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-----RTILDSFVG 473
           W  D  R   + +P  A  LG     + G    +   +  +  +         +L   + 
Sbjct: 241 WQIDRTRLIRSVSPRFAFALGSPPEQIEGKP--FFEVLSGDGWEVCNFAPSLRVLADRIK 298

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R        +V     Q  W  +   PM +  G  + + G+ +D+TEQ+KS E I   A
Sbjct: 299 ARESFSNLIVQVW-VGGQKRWWELSGTPMLDERGQEVGFRGVGSDVTEQRKSSEKIAYLA 357

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR    + L   +D +      R   +++D+D++K +ND LG  +GD +L 
Sbjct: 358 RYDTLTGLPNRLMLNESLGEAMDEA-RQWRRRCAFIMLDLDRFKAVNDSLGHQIGDRLLE 416

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++RR+ EL    +I  RL G+ F I++    +S  +   A  + + ++ P  + +  + 
Sbjct: 417 QVSRRLSELTGENEICGRLGGDEFAIVMRDAPDSCAVDALARKVIERLSQPYEVDQHTLF 476

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
           V AS G A       T  E+++NA+LA+Y AK  G     ++  S      +R  ++  L
Sbjct: 477 VGASAGSALAPRDGKTVEELMRNADLALYRAKDGGRGVHFAYEPSLHADAEERRQLEFSL 536

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  EL L + P++    E +V  EAL++W     G +S  +F+ +AE+  +I  I 
Sbjct: 537 RKALEKDELLLNFQPVVDANSERVVSFEALVRWQSEDHGFVSPGKFIPVAEDTRLIVPIG 596

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++++  R+ ++W        + + +N++ + L++ +  + +   ++++   P R+++ 
Sbjct: 597 TWVMQQACREAMAWPR-----GVKVNVNVSPEQLMEPDFADTVVDALTRSGLDPQRLEIE 651

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+ +G+ E +R  L ++  +G  + LDDFGT  S L YL  + F T+K + S + G+
Sbjct: 652 VTESIFLGDAEIARQALAKVMALGCQVALDDFGTGYSSLGYLRKLQFSTIKVDRSFVQGA 711

Query: 892 ---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + + +AI+R+++ MAK++E    A+ +  E + + + RMGCD IQ  +   P+    
Sbjct: 712 AQGSSESLAIVRAVVAMAKSLEMKTTAEGVETEDEARLVCRMGCDRIQGFYFGRPMSSAD 771

Query: 949 ILKLLKERFPLVK 961
              L    +  ++
Sbjct: 772 ARALFSNDYSQLR 784


>gi|156972882|ref|YP_001443789.1| signal transduction protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524476|gb|ABU69562.1| hypothetical protein VIBHAR_00559 [Vibrio harveyi ATCC BAA-1116]
          Length = 815

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 147/554 (26%), Positives = 265/554 (47%), Gaps = 13/554 (2%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +        I G  +  + G   N L   H +   
Sbjct: 267 QLSLASKIFDNSHEGMVITDRKANILDVNSAFTHITGYTAEEVIGKNPNILRSGHHD--S 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 KFYQQLWRQLESK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   ++      +     + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIESGQQHQHA-FATLFLDIDHFKHINDS 442

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F IIL +  +  ++ D    +     
Sbjct: 443 MGHFCGDQLLTKLADRLQDVLHLRAHVARIGGDEFVIILPNIESDSQLIDTIEDILCLFN 502

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P  + + E + ++ S+G A +      S  +LKNA+ AMY AK  G N    +      
Sbjct: 503 RPFEVSKNEPLRISTSVGVARYPQDGQESETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V ++  L  A+E ++L+L Y P   L   E+VG+EAL++W HP  G IS ++F+ 
Sbjct: 563 KSVSHVRMQSALHEAIEKNQLHLAYQPQYNLSANELVGVEALLRWQHPDLGMISPADFIP 622

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++LE+      +W D        + +N+++  L  ++    + A++ 
Sbjct: 623 IAEKTGLIQSIGKWVLEQACLQGRAWLDNGIEFG-KLAVNVSALQLQQSDFISKLGAILK 681

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R++L  +ES ++ +P+++   L  LR++GI ++LDDFGT  S LSYL  +P +
Sbjct: 682 ETEFPAHRLELEITESFLLIDPQQAIASLNLLRELGIEISLDDFGTGYSSLSYLKGLPIN 741

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   S     AI+ +II M + +   ++A+ I  +   + L   GC Y Q 
Sbjct: 742 KLKIDRSFVSDVPSNTDSNAIVNAIIAMGQTLSLKVVAEGIETDEQAQYLFERGCIYGQG 801

Query: 938 SHVASPLGFNSILK 951
              ++P+    + K
Sbjct: 802 FRFSAPVRAEKLFK 815



 Score = 39.2 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 7/194 (3%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
             P W+            +     N +I   L      I   +     +           
Sbjct: 85  YCPVWLP-SGELFAALALVHPTEQNTVISGWLSALAGRIGFDVAQIYHKEQKRHDVQLPE 143

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +     +    D  W          T   +     +    + G            
Sbjct: 144 LLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEDSWQMTGSDIVGKND--FELFSSR 198

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               F       +         E  +   +N   W+     P+ +  G+++  +G+  ++
Sbjct: 199 RAKKFIDTDQLVIATGSQNTVEECTLIDDNNNPTWLETIKSPIRSQTGELVGILGMTRNV 258

Query: 520 TEQKKSLEGILCNA 533
           T ++K +E  L  A
Sbjct: 259 T-RRKMVETQLSLA 271


>gi|220936310|ref|YP_002515209.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997620|gb|ACL74222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 842

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/570 (25%), Positives = 261/570 (45%), Gaps = 15/570 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ + +  ER S  +      ++  D           +  + G +   + G       + 
Sbjct: 277 TRQLRASEERLSTILNSVEACIYIKDTELRYQYANRKVCELFGASPERIIGRRDA--DFF 334

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGI 515
                       D  V  R  R   E   R  D +     + ++ P+  ++G I    GI
Sbjct: 335 DAETAARLEQN-DRLVLERGERFAEEEHNRTRDGRHVNTFLTVKLPLRRADGHIYALCGI 393

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           + DI+EQKK LE +   AF D LTG+PNR+  +D+L   L       +    ++ ID+D 
Sbjct: 394 STDISEQKKILEEVHQLAFFDPLTGLPNRRLLIDQLRHALANCDRTGH-EGALLFIDLDN 452

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKI 630
           +K +ND LG  +GD +L  +  R+ E ++  D LARL G+ F ++L            ++
Sbjct: 453 FKNLNDTLGHDMGDLLLQQIAERLREHVRENDSLARLGGDEFVVMLEGLQPEGGEAVHQV 512

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +   ++ P +L      +TASIG A ++ S  T  E+LK A+LAMY AK  G N
Sbjct: 513 RHVGEKLLGVLSEPFSLDRVVYRITASIGVAMFSDSDDTVEELLKRADLAMYEAKSAGRN 572

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F  S   +      ++ DL  A++  + +L   P +       VG EAL++W HP+
Sbjct: 573 GLRFFNPSMQAAVSARAALEADLREALQTEQFFLELQPQVDAA-GTAVGAEALLRWRHPE 631

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ +AE   MI  +  ++L +    + +W     M  + + IN++ +     
Sbjct: 632 RGLVSPGEFIPVAEATGMILPLGDWVLRQACAQLAAWSRDPAMVGLVLSINVSVRQFRHP 691

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +  ++  +   P R+++  +ES ++ N E    ++ RLR  G+  +LDDFGT  S
Sbjct: 692 DFVSRVLDVLEDSGADPRRLEMELTESQLVDNVEEMIGIMMRLRARGVRFSLDDFGTGYS 751

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P + +K + S +          AI+R+++ + ++++  +IA+ +  E    +
Sbjct: 752 SLSYLKRLPLNQLKIDQSFVRDLLVDSNDEAIVRTVVALGESLDLRVIAEGVEREAQRDK 811

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L  +GC Y Q      P    ++ + +   
Sbjct: 812 LLALGCRYFQGYLYGRPGPAGALSRCVARE 841


>gi|26988709|ref|NP_744134.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24983498|gb|AAN67598.1|AE016389_6 sensory box protein [Pseudomonas putida KT2440]
          Length = 1136

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 144/583 (24%), Positives = 266/583 (45%), Gaps = 18/583 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
              T ++ +         + S  E+ + A   S D +   +    R +        + G +
Sbjct: 553  SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYS 612

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     +  I  +D+    + L + +  R      E   R        + + + P
Sbjct: 613  TDEVIGHTVYEI-GIWADDKQR--SALLAELRERGRVHHREMLGRNKRGDILTVEVSVEP 669

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++    ++   +  A D+++ K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 670  ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 727

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 728  -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 786

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        K+ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 787  SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 846

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 847  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 906

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP+ G    S+F+ + EE  +I  +  ++L+                  
Sbjct: 907  IVGAEVLLRWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 966

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    N+    +   +         + L  +E +V+ N E +   +  L+
Sbjct: 967  DFNLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELK 1026

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + S +  +        I+R+I+ MA++++
Sbjct: 1027 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1086

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+ +     +  L R+GC   Q    + PL      ++L
Sbjct: 1087 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLPEFRQML 1129



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 288 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 347

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GL     H     +   +  ++R++ R    S      G  Q  +RV+  +  
Sbjct: 348 ARAAQLHGLPPIPFHESFDAFFEGVPEHERNSMRQAYRSLREGPAGNYQITYRVQLENGT 407

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   +  G  LR  G   DIT+Q +  + 
Sbjct: 408 SRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQR 444



 Score = 94.2 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  + +  +   A+ G+    W WDI   RV+ +     + G           ++L  +
Sbjct: 60  SEQAWQNAPQLLAALNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 119

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR   R +  + V           R+R  D   HW+ I      + +G     IG+ 
Sbjct: 120 PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVI 178

Query: 517 NDITEQKK 524
            +IT Q++
Sbjct: 179 REITRQRE 186



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442
             VI+ +         + +  +R +     S + +         +         + G   
Sbjct: 175 IGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFGWPG 234

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G     L   ++   R        +      G L  E + RA   + H  I+  + 
Sbjct: 235 SQVIGKTSLELGLWVNPEQRHQIVESTRA----NGGPLIMEVQFRATSGKVHDGILCTQG 290

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +      +   I    D TE+K++       A +D+           +RL   LD + 
Sbjct: 291 IELEG--VTFLISTFVDTTERKRAE-----QALKDS----------QERLDLALDSAQ 331



 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 15/166 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        + +   P      G +S
Sbjct: 429 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS 488

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     +  +     +  + I           +     +   +      +I  R +
Sbjct: 489 AQVLGRTAEEI-GLWAESVERAKRIEQVIREQALSNVAVV--LNHRNGDPLTCVISSRLI 545

Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539
           +  +      +    DIT+Q+++       E     AF    D +T
Sbjct: 546 TVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 589


>gi|119490567|ref|ZP_01623009.1| hypothetical protein L8106_08046 [Lyngbya sp. PCC 8106]
 gi|119453895|gb|EAW35051.1| hypothetical protein L8106_08046 [Lyngbya sp. PCC 8106]
          Length = 696

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 150/576 (26%), Positives = 271/576 (47%), Gaps = 7/576 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           T I+  L      Q +    +  S  +    D V   D +       P    + G +  +
Sbjct: 121 TTIEIALYKHQIEQQLRDQSQWLSTILDSIADGVIATDKMGKVNFMNPVAEELTGWSLQA 180

Query: 445 MHGP-IRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             G  I +    IH   R + +  IL +       +L     + + ++Q   +   I P+
Sbjct: 181 GIGQDITSIFNLIHEESRHSLQPLILKTIEQGHSIKLTEPTLLISRNSQEFPIDDSIAPI 240

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            NSN +I   + I  DIT QK + + +   AF D LTG+ NR  F+ +L         + 
Sbjct: 241 VNSNNEIQGSVLIFRDITHQKIATDKLRYQAFHDPLTGLLNRHGFMQKLQEADSYRLINP 300

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    +  +D+D++K IND LG  VGD +L  +  ++ + ++  D +ARL G+ F I++ 
Sbjct: 301 DFVFAIFFLDLDRFKVINDSLGHQVGDQLLQVIANKLIQSVRNIDEVARLGGDEFAILIE 360

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           + ++  +I   A  +R  I  PI++   E+    SIG    +       +++++A+LAMY
Sbjct: 361 NLDDLHEICQIAQRIRNEIIKPIDINGDEVFTNVSIGIVLSSIGYNQVDDLIRDADLAMY 420

Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G    E F   +         ++ DL  A++  E  + Y PI+ L    I G EA
Sbjct: 421 RAKTLGRGRYEVFNETMREQVRFIQKLESDLRRALDRKEFQVYYQPIVNLQTSVIYGFEA 480

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILIN 799
           L++W+HP+ G ++  +F+ IAEE  +I  ++  +++   + +  W +   N PP  I +N
Sbjct: 481 LVRWNHPERGLLTPGDFIPIAEETGLIMQLDWQVIQEACQQVYHWNENCKNRPPFVISVN 540

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++K  +   L + +  L+  T      +K+  +E+ ++  P++  + + +L+ +GI L+
Sbjct: 541 LSAKQFIQANLVDQVTKLLKDTGLESKCLKIEMTETALLEEPKKVAVTISQLKSLGIGLS 600

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LSYL     D +K + S +       +   I+R+II +A  +    IA+ 
Sbjct: 601 LDDFGTGYSSLSYLHRFSVDNLKLDISFIQTMNSEPQSFEIVRTIIVLAHALNINAIAEG 660

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I     +  L  + C   Q  + + PL   +I +LL
Sbjct: 661 IETADQLNTLQHLNCPLGQGYYFSKPLPAENIQQLL 696


>gi|160877155|ref|YP_001556471.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862677|gb|ABX51211.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315269359|gb|ADT96212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1497

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 265/563 (47%), Gaps = 12/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  +    + A   + + V   D+             I+G+ S  + G        +
Sbjct: 932  QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSADLVGQSFTQFVQM 991

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D   + +   +         E  +  A  Q   + + +  M ++NG +  Y+ + 
Sbjct: 992  N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1046

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D++
Sbjct: 1047 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1105

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + N+  +I   A  
Sbjct: 1106 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDEINHIAER 1165

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            + + I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + + 
Sbjct: 1166 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1225

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I +  +++++G+EALI+W HP  G I 
Sbjct: 1226 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1285

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W  +       + +NI++      +  E 
Sbjct: 1286 PDIFIKVAEACGLIVDIDRWVLRQACVQGAQWAKRYGAT-FKLSVNISAVHFRQPDFIED 1344

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q ++ +T    + + L  +E V+M     ++  L RL+ +GI + +DDFGT  S L+YL
Sbjct: 1345 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1404

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1405 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1464

Query: 932  CDYIQDSHVASPLGFNSILKLLK 954
            C  IQ  + A P+      + L+
Sbjct: 1465 CYIIQGYYFAKPMCVADFERYLE 1487



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + +      +Q +    +R   ++ GS   +W+W         
Sbjct: 782 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 841

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DR+      DS +     R + E+R +  D 
Sbjct: 842 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 898

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP++ +    +I R  GI +DIT Q++  + +   A
Sbjct: 899 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 943


>gi|294139038|ref|YP_003555016.1| sensory box protein [Shewanella violacea DSS12]
 gi|293325507|dbj|BAJ00238.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1486

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 143/582 (24%), Positives = 266/582 (45%), Gaps = 12/582 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                +  + +     + +  D +  + A   + + V   D       +     TI+G ++
Sbjct: 910  SILRVAGIYSDITLQRQLEDDVKLLAQAFGNTSEGVLILDGAERIKVSNKAAQTIVGASA 969

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              ++G   + L        D+   +L   +         E            + + +  M
Sbjct: 970  EMLNGKFFSELILAKEGRSDDIVCLLKQEIS-----WTGEQEFLREQGGSCPVWLNVSAM 1024

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              S G+I  Y+ + +DITE+K+S   +   A  D LTG+PNR  F  RLT  +D +    
Sbjct: 1025 LGSKGNITHYVAVFSDITERKRSEADLRRLANYDVLTGLPNRSLFATRLTQSIDGA-EHS 1083

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              +  ++ +D+D++K +ND  G ++GD +LV    R+   +     L R  G+ F I+L 
Sbjct: 1084 GEKLALIFLDLDRFKHVNDSYGHSMGDALLVEAANRLQSCISPEHTLCRFGGDEFVILLR 1143

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               N   I      + + I  P  L  RE  ++ SIG + W      +  ++ NA+ AMY
Sbjct: 1144 DAANLDTINHICTQLLEQIETPFELYGREFFISTSIGVSLWPDDAREAEVLINNADQAMY 1203

Query: 683  HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLE 739
            HAK  G  + + F    +S     + ++ +L  A+E  E  L Y P + +   +++ G+E
Sbjct: 1204 HAKEEGRGNFQYFSSERNSEALYHLRLEAELRKAIERDEFELHYQPQVNILKGDKLCGME 1263

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W H + G I +  F+ +AE   +I  I+L++L +       W       P  + +N
Sbjct: 1264 ALLRWHHHEDGLIRTDIFIKVAESCGLIVDIDLWVLRQACIQGKIWSKSYA-EPFKLSVN 1322

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            I++      +  +G++ ++ +T   P  +    +E V+M   + ++  L  LR +GI + 
Sbjct: 1323 ISAVHFRQPDFIQGVKRILQETELDPRLLGFEITEGVLMKELDTAKEHLLELRALGIDVA 1382

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S L+YL +   DT+K + S +      E   AI  SII +A+N++  ++A+ 
Sbjct: 1383 IDDFGTGYSSLAYLRHFDVDTLKIDRSFLIDIATNEADQAIASSIIELARNLKLNVVAEG 1442

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +  +  ++++   GC  IQ  + + PL    I K +    P+
Sbjct: 1443 VETKEQLEQVFSRGCYVIQGYYFSKPLTVVEIEKYMDNSSPI 1484



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             + V A    +  +    ER   ++ GS   +W+W       +                
Sbjct: 789 RQRQVQAFKRINTALVESEERLRQSLKGSDSELWEWRHDSQMFSLENQREE-----KEDD 843

Query: 446 HGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G I   L    IH  DRD      D+       R   E+R R  D  + W  +  RP+ 
Sbjct: 844 RGNIFLKLEDVPIHREDRDKVVNAWDNMQQGLSDRFDVEYRYRRKDKSWGWTRVLGRPVE 903

Query: 504 --NSNGDILRYIGIANDITEQKKSLEGILCNA 533
               +G ILR  GI +DIT Q++  + +   A
Sbjct: 904 VDAESGSILRVAGIYSDITLQRQLEDDVKLLA 935


>gi|16124993|ref|NP_419557.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233714|ref|YP_002516150.1| PAS family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|13421971|gb|AAK22725.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|220962886|gb|ACL94242.1| PAS family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 842

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 156/722 (21%), Positives = 297/722 (41%), Gaps = 26/722 (3%)

Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI---ACIAILFCMSFYYPMV 306
             +        + S  ++ L  ++   R       ++  G+      A L  + +    V
Sbjct: 102 HRVGIGIWAALVISYALLGLRGWVSAQRRKTGKAAVSARGVRRVVLQAALLGLLWGVLPV 161

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
                  T A  ++  +      G  G+    L   A        + L          D 
Sbjct: 162 LTFRLGDTSAMPMMVASVIAGMIGCGGFALLTLPAAALAY--STPMVLGSLYMLGTSGDP 219

Query: 367 IQPALVGGLVLIVILIGFTVIQHVL---ATGYFSQGIFSDGERQSLAV----LGSGDIVW 419
           I  AL G LV    ++  + + H          +  +    +  SL +     G+ D +W
Sbjct: 220 ILYALGGLLVFCYAVVIVSCLSHARIFAERLVAADELEKQKQVVSLLLSDFEEGASDWLW 279

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           + D        +  +A   G+   ++ G   + L              L +    ++   
Sbjct: 280 EVDAAGRLTYVSDRMAAAAGVDKDALLGQPMSDLCGAAEAPGGPV-AALSALFAEQKTFR 338

Query: 480 QYEFRVRAADNQ----FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                +  AD+      HW  +  +P+ + +G  + + G+  DIT+ ++  E I   A  
Sbjct: 339 DVVVSITVADDAGRPATHWWALSAKPVHDLDGLFVGFRGVGADITQAREDQERISHLAHY 398

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNR S L  L         D      V+ +D+D +K +ND LG  VGD +L+ +
Sbjct: 399 DVLTQLPNRLSLLQNLGKAWMDHGRDKTSGCAVLCLDLDHFKGVNDSLGHPVGDALLMQV 458

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+   +    ++ARL G+ F ++         ++  + ++ ++++ P ++L   + + 
Sbjct: 459 ASRLRSCVGETGMVARLGGDEFAVVCAPSPGHEALSALSQSIVETLSAPYDILGHNVLIG 518

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
           AS+G A           +LKNA+LA+Y AK  G      F  +      +R  ++ DL  
Sbjct: 519 ASVGIAVAPFDADDPDGLLKNADLALYRAKGDGRGAYRFFETAMDVWAQERRALEMDLRE 578

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   EL L + P+I   D E  G EAL++W HP  G +  S+F+  AE+  +I  I  +
Sbjct: 579 ALARDELKLFFQPLIGRRDNETTGFEALLRWQHPTRGLVPPSDFIECAEQWGLIGRIGEW 638

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L    R   +W        + + +N++       +L + ++A +  +  +P+R++L  +
Sbjct: 639 VLNEACRTAATWPSH-----LTVAVNLSPNQFASGDLVDQVRAALKASGLAPARLELEIT 693

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E +++ +  ++   L  L+ +G+ + +DDFGT  S L+YL   PFD +K + S +    +
Sbjct: 694 EGLLLHDSAKTLEQLAALKALGVKIAMDDFGTGYSSLAYLWRFPFDKIKIDRSFVAEMQD 753

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 ILR+I  + + +   + A+ +  +   + L  M CD  Q      P+    I  
Sbjct: 754 NVAIADILRTIALLGQTLNLEVTAEGVETQAQARLLAEMRCDQFQGFLFGRPMPVGDIPS 813

Query: 952 LL 953
            L
Sbjct: 814 FL 815


>gi|269959455|ref|ZP_06173838.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835892|gb|EEZ89968.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 836

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 146/554 (26%), Positives = 268/554 (48%), Gaps = 13/554 (2%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +        I G A+  + G   N L   H +DR+
Sbjct: 288 QLSLASKIFDNSHEGMVITDRKANILDVNSAFTHITGYAAEEVIGKNPNILRSGH-HDRE 346

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++ +        +G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 347 FYQQLWRQL--ENKGQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 404

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   ++      +     + +DID +K IND 
Sbjct: 405 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIENGQKHQHA-FATLFLDIDHFKHINDS 463

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F IIL +  +  ++ D    +     
Sbjct: 464 MGHFCGDQLLTKLAERLQDVLHLRAHVARIGGDEFVIILPNIESDSQLIDTIEDILCLFN 523

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P  + + E + ++ S+G A +      S  +LKNA+ AMY AK  G N    +      
Sbjct: 524 RPFEVSKNESLRISTSVGVARYPQDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 583

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V ++  L  A+E ++L+L Y P   L   E+VG+EAL++W HP  G IS ++F+ 
Sbjct: 584 KSVSHVRMQSALHEAIEKNQLHLAYQPQYNLSANELVGVEALLRWQHPDLGMISPADFIP 643

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++LE+      +W D        + +N+++  L  ++    +  ++ 
Sbjct: 644 IAEKTGLIQSIGKWVLEQACLQGRAWLDNGIEFG-KLAVNVSALQLQQSDFISKLGVILK 702

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R++L  +ES ++ +P+++   L  LR++GI ++LDDFGT  S LSYL  +P +
Sbjct: 703 ETGFPAHRLELEITESFLLIDPQQAIASLNLLRELGIEISLDDFGTGYSSLSYLKGLPIN 762

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   S     AI+ +II M + +   ++A+ I  +   + L   GC Y Q 
Sbjct: 763 KLKIDRSFVSDVPSNTDSNAIVNAIIAMGQTLSLKVVAEGIETDEQAQYLFERGCIYGQG 822

Query: 938 SHVASPLGFNSILK 951
              ++P+    + +
Sbjct: 823 FRFSAPVRAEKLFR 836



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/194 (11%), Positives = 51/194 (26%), Gaps = 7/194 (3%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
             P W+            +     + +I   L      +   +  T  +           
Sbjct: 106 YCPVWLP-SGELFAALALVHPTEQDTVISGWLSALAGRVGFDVAQTYHKEQQRHDVQLPD 164

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +     +    D  W          T   +     +    + G         +  
Sbjct: 165 LLPSLQEFIDCLE---DHTWIKSTDGRYAMTNRSVEDSWQMTGSEIVGKND--FELFNSR 219

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               F       +         E  +   +N   W+     P+ N  G+++  +G+  ++
Sbjct: 220 RAKKFIDTDQLVIATGSQNTVEECTLIDDNNNPTWLETIKSPIRNQTGELIGILGMTRNV 279

Query: 520 TEQKKSLEGILCNA 533
           T ++K +E  L  A
Sbjct: 280 T-RRKMVETQLSLA 292


>gi|312136202|ref|YP_004003540.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
            [Caldicellulosiruptor owensensis OL]
 gi|311776253|gb|ADQ05740.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor owensensis OL]
          Length = 1016

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            SQ +  + E+    V    D+V++ DI + ++     +     + +         WL Y+
Sbjct: 446  SQVLEEEKEKYKFFVDNVSDLVFELDINQKKIELYGKLKDSFDVETICSTKSSLVWLEYL 505

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +DR          +      ++ +FRV+    ++ W+  R     +   +  + + + 
Sbjct: 506  HEDDRGKVFRKFQDAIFLGDEYVELDFRVKDKCGRWRWLSSRAHINYDEQKNPEKIVAVC 565

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D T +K+    I   A+ D LTG+PNR+ F + L   L  +   +     V++IDID +
Sbjct: 566  VDWTAKKEYENKIEYLAYYDTLTGLPNRKLFEETLEDWLKKTKA-EKSTGAVVLIDIDNF 624

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADF 633
            K IND+ G   GD+ L +L  ++ E LK        AR+ G+ F II        ++ +F
Sbjct: 625  KDINDIYGHEAGDEYLKALGEKVSEYLKKLEVKTFFARVGGDEFAIIFHGLVKKEQVIEF 684

Query: 634  AIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               + K     I +   +R +  +AS+G + +        E+ +N ++A+  AK  G N 
Sbjct: 685  CAQLLKIFESEIYIESIDRHLFTSASMGISFYPDDGKNVKEIFRNVDMALSSAKDNGKND 744

Query: 692  VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + F       +  ++ I+++L  A+E  +  L Y P+I L D EI  +EAL++W+ P  
Sbjct: 745  FQIFMPFMLMKNLKKIEIEKNLKKAIEEDQFELYYQPVINLKDMEIHSVEALLRWNLPGK 804

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            G +S  EF+ +AEE  +I  I   ++E+   DI +W  +     I + IN++ +      
Sbjct: 805  GMVSPLEFIPVAEESGLIVKIGEMVIEKAFSDIKNWERKGIDY-INMAINLSVRQFKTKF 863

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
              + ++ LI +    P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S 
Sbjct: 864  FVDVVKKLIERYSVDPQKISFEITETGAVENFDVSLKILNFLCQMGIKFMIDDFGTGYSS 923

Query: 870  LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            L YL  +P   VK + S ++    +++  AI+  I+ +A  I+  ++A+ +  + +++ L
Sbjct: 924  LIYLRKLPIGGVKIDKSFISEIESSKESRAIVEGIVLLAHKIDLKVVAEGVETKKELEIL 983

Query: 928  TRMGCDYIQDSHVASPLGFNSILKLL 953
              +GCD+ Q    + PL    + KLL
Sbjct: 984  KEIGCDFAQGYLFSKPLPKTEVEKLL 1009



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 2/164 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           N       +  L +I   +  TV+  +        G  +      L    +  IV   ++
Sbjct: 258 NRETILTFLFILAIIFFAVSLTVLIMIKINKRLEHGKRAYESYAQLLADNANAIVLTLNL 317

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             + +        + G  S  + G    W      + R  +   L S +   +    +E 
Sbjct: 318 KGEIIYFNKFAEQLTGYTSEEVIGKK--WTDIFIPSHRREYIENLFSKIAEEKVLNDHEN 375

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +   +    W++     + +   +    I    D+T+ KK+ +
Sbjct: 376 EIITKNGDIRWILWNNALIESPYLNEPLIISTGLDVTQIKKTQQ 419


>gi|113969504|ref|YP_733297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113884188|gb|ABI38240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 878

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 143/561 (25%), Positives = 268/561 (47%), Gaps = 15/561 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      + + V   D   +          I G +   + G   R +    H  
Sbjct: 323 EEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRH-- 380

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           ++  F  + +  +    G+   E   R  D       I I  + +  GD+  ++ + +DI
Sbjct: 381 EKAFFDAMWNHLLE--TGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDI 438

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK+S   +   A+ D LT +PNR   + +L   L  +    N +   + ID+D +K I
Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRL-NAQLATVFIDVDLFKHI 497

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   L+  D+L+R+ G+ F  ++    +    A     +R+
Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQ 557

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + +      +  +L+NA+ AMY AK  G N+   +  S
Sbjct: 558 VFEQPFVVSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + +G+EAL++W+ P  G IS   
Sbjct: 618 LTKQSFEHLKLQSALYGALEQNALYLMYQPKLDLVSRKTIGVEALLRWNDPILGQISPGV 677

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE      + W  +   P   I +N+A + L  +   E ++ 
Sbjct: 678 FIPVAEKIGLIYDIGLWVLETACLQGVRWLAE-GKPFGRIAVNVAGQQLQRSSFVEDVKR 736

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T    + ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 737 ILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 796

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  I+A+ +  +   + LT+  CD 
Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGVETQAQAEFLTQNLCDQ 856

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + PL    +   L +
Sbjct: 857 AQGYLFSRPLLPADVEAFLAK 877



 Score = 38.8 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 3/117 (2%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +W  +           +     L    + G              + F       +     
Sbjct: 217 IWVKNTEGVYTICNHSVEKAWELPRSEIVGKTDE--DLFGKEIAEIFLNGDRLAIEAGTP 274

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  E       N+  W+     P + ++G +   IG+  +I++ K+ +E  L  A 
Sbjct: 275 IIVAECLDGEKQNKHLWLETLKIPATTADGALAGVIGMTRNISKHKE-VEEQLTLAT 330


>gi|138894279|ref|YP_001124732.1| sensory box/GGDEF family protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265792|gb|ABO65987.1| Sensory box/GGDEF family protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 946

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 135/617 (21%), Positives = 269/617 (43%), Gaps = 16/617 (2%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
               +  +   ++   R   DI QP      +  ++      ++ + A       +    
Sbjct: 342 AFAAVSLMEGAVSTQDRPTLDIPQPPEGITTLAQLMSTSSRDMERLHAR------LQMSE 395

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R       + DIV+  D+     +  P    +LG     +       L Y+H +D    
Sbjct: 396 QRYKSLFEHNTDIVYSTDLHGHFTSVNPAFERVLGYRKEEILYTNS--LKYVHSSDIPRV 453

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                  +         E  +     +     ++  P+   +G  +   GI ++ITEQKK
Sbjct: 454 TRYFYRALRGNVQTYDLE--IPTKSGERLLFQMKNIPII-VDGKKVGIYGIGHNITEQKK 510

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E I   A+ D  T +PNR  +++  +  L  +      +  + +ID+D++K IND +G
Sbjct: 511 AEEKISYLAYYDPDTNLPNRTKWMELFSKQLKRAKQKQQ-KVVIALIDLDRFKWINDSVG 569

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GDD+L  L  R+  +L     L R  G++F ++   + ++    + A+ + + ++ P
Sbjct: 570 HYAGDDILRQLVERMKRVLPAGAQLGRFHGDKFCLLFPLKTSAGAATETALQLVREVSKP 629

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
               ++E  +TASIG A +         +L++A++AM  AK  GGN VE +         
Sbjct: 630 TVYSQKEFFITASIGLAVFPDDGADEHTLLRHADMAMNSAKKSGGNRVERYCAQMNEEAV 689

Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             ++ D  L  AVE +EL+L Y PI+ +    ++  EALI+W +P+ G +   EF+ +AE
Sbjct: 690 HRLEMDSYLRKAVEKNELFLCYQPIVNVRTGAVIATEALIRWRNPQLGLVRPDEFIPLAE 749

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  I  ++L+   +    W++      + I +N+++         + ++  + ++ 
Sbjct: 750 ETGWIHEIGRWVLQTACQQTKRWQEMTGNDKLAIFVNVSAVQFQHERFVDDVKRALKQSN 809

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SPS + L  +E  ++ +   +   L  LR++G+ + +DDFG+  S   YL  +P   +K
Sbjct: 810 LSPSCLHLELTEHSMLRHLSSTMRTLDELRRLGVGIAVDDFGSGYSSFHYLKQLPATILK 869

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +          AI+ ++I M + +    +A+ +     ++ L  + C Y Q   +
Sbjct: 870 IDRAFIEHLHANASDAAIVSAMITMGRGLGLETVAEGVETLEQLERLRDLQCSYAQGYAL 929

Query: 941 ASPLGFNSILKLLKERF 957
             PL    +   +  + 
Sbjct: 930 CPPLMAEEVTPYVAGQQ 946


>gi|325291024|ref|YP_004267205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966425|gb|ADY57204.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 723

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 146/554 (26%), Positives = 266/554 (48%), Gaps = 11/554 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L +  S D VW                 +      + +  I  W   IH +DR++   
Sbjct: 167 LELIMRSSCDRVWYLKRNTGEKELAGRFLNVC----STENITIEEWEHRIHPDDREHVCK 222

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + + F   +      E+RVR+ D  + W+    R  S+ NG      G+  DI   K   
Sbjct: 223 LFNEFFNGKTEDYYDEYRVRSEDGSYKWIRSSGRSYSDQNGKPSILAGMHIDINNLKVHE 282

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A+ D+LT +PNR+ F DRL   L  +    N +  V+ +DID +KKIND +G  
Sbjct: 283 DQLAYIAYHDSLTSLPNRKLFFDRLDITLKKAKRL-NEKVAVLFLDIDNFKKINDSMGHD 341

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD++L     RI   ++  D LARL G+ F +   + + + +I      ++     P  
Sbjct: 342 CGDEILRQSAHRISSNIRDYDTLARLGGDEFVLSFQNASCNEEILALTKRVKDCFLKPFV 401

Query: 647 LLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           L +  +  ++ SIG + +    +T  E+LK A++AMY AK  G N V  F  +      +
Sbjct: 402 LGKNSVVHLSCSIGISVFPDHGVTKEELLKYADMAMYKAKESGKNTVRIFSFAIAEEVLL 461

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +++ L  A+E  E  L+Y P   +    I G+EAL++W++P  G++   +F+ +AEE
Sbjct: 462 KFNMEKGLRKALEKEEFELIYQPQYDIETGRIRGVEALLRWNNPFKGHLEPVDFINVAEE 521

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  +++++       W+ + +   + I +NI++  L + ++ + ++ ++S+T  
Sbjct: 522 TGLIIPIGEWVIKKACETAKKWKSEYDFQGM-ISVNISATQLRNGDIVKAIKDILSETEL 580

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SPS +++  SE+      + + L +  L+K+GI ++LD+FG   S L YL  +P   +K 
Sbjct: 581 SPSSLEIEISENTFADCLDETILKMIELKKMGIKISLDNFGKGYSSLGYLRRLPIHVLKI 640

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +           I+ SII +A++++  +IA+ I        L +  C +IQ    +
Sbjct: 641 DKSFVEEINPGYQGKKIVSSIISLAQDLDIDVIAEGIETSEQYDYLKKARCGFIQGHFTS 700

Query: 942 SPLGFNSILKLLKE 955
            P+    I +L+K 
Sbjct: 701 KPISEELIGELIKR 714


>gi|90021239|ref|YP_527066.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950839|gb|ABD80854.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 823

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 148/570 (25%), Positives = 268/570 (47%), Gaps = 16/570 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               ++ +     R       +   ++  +   + +        I G   G      + +
Sbjct: 251 LAKENEALVVSESRFRTLAESAPIGIFLRNENFETLYVNDRWCAITGQPHG---CSRQEY 307

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNG---- 507
           L  I   D  N+  +++       G+   E+R RA      H ++  + P+    G    
Sbjct: 308 LKSISDYDLRNYEGMIEGLRSGSVGQ-TIEYRYRAPGRLNDHILMEYVTPLEVKEGVSGE 366

Query: 508 -DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +  Y+G   D+TE K +   +   A+ D LT +PNR+ F D L   L L+  +D++  
Sbjct: 367 HQVRGYVGSVLDVTELKNAQHELEKLAYYDPLTHLPNRRYFKDYLVKQLQLAKEEDSI-M 425

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+++D+D +K+IND LG   GD +L  L  RI + L   D++AR+ G+ F ++L + ++
Sbjct: 426 AVLLVDLDNFKRINDTLGHDAGDILLSVLAGRIKQRLHSQDLVARMGGDEFYLVLRNLSS 485

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++      +R  +A PI +    + +TASIG AS+  +  T  E+++NA++A+Y AK 
Sbjct: 486 LAEVEKITKRVRSVLASPIRIKNHFVEITASIGVASYPENCDTPEELMRNADIALYKAKG 545

Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N V  F     S   D++ ++  L  AV      +   P       +    E LI+W
Sbjct: 546 DGRNRVAYFSAELDSQLRDKMRLESKLRQAVSCEAFEIYIQPQYDYKTSKFRWAEVLIRW 605

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASK 803
           + P+ G I   +F+ +AEE  +I  I+ ++L    +      +      I  + +N++++
Sbjct: 606 EDPEEGFIPPDKFIKLAEETGIINDIDQWVLRATCKLWAEHGEALRAIGIEGVSMNLSAR 665

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   ++A+  +   +PS I    +ES+V+ N E +   + RLR IG  +++DDF
Sbjct: 666 QFYSKTLFAYVEAVFEEYGINPSCISFEITESMVIENIEGAIETMERLRNIGSRISIDDF 725

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D++K + S +         +AI  +II MA+ +  ++IA+ I  +
Sbjct: 726 GTGYSSLSYLKRLPIDSLKIDRSFIMDIPGDTNDVAITSAIIAMAEKLNLSVIAEGIETK 785

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              + L   GC ++Q  + A P    + LK
Sbjct: 786 EQCEFLVEQGCFHMQGYYFAKPAPVRTFLK 815


>gi|89899270|ref|YP_521741.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89344007|gb|ABD68210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1037

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 152/611 (24%), Positives = 255/611 (41%), Gaps = 15/611 (2%)

Query: 351  FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
             IG +                +   + + I                   +    ER   A
Sbjct: 433  VIGAFTLYAGEACAFDEAAQNLLLEMALDISFALDRFADERERKIMQDDLRDSEERYRKA 492

Query: 411  VLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTIL 468
               S D V    +     V        I G     + G     L    +  DR      L
Sbjct: 493  FQTSPDAVNITRLVDGLYVDVNTGFERITGWRHDEVVGKTATELNLWGNPADRMRLVDAL 552

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             S    R   L+  F     +      ++    +   +  +   + I  DITE+K +   
Sbjct: 553  QS--EGRCNNLEATF--VKKNGDIFHGLMSAEKVRFKD--VDCILSITRDITEKKLAEAQ 606

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            I   A  D LTG+PNR    DR    L L+    + +  +M +D+D +K IND LG +VG
Sbjct: 607  IQQLAHFDQLTGLPNRSQLHDRFRYALSLAQRHGD-QLAIMFLDLDHFKNINDTLGHSVG 665

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D +LV ++RR+   L+  D L+RL G+ F ++L    +  + +  A  +  ++A P  + 
Sbjct: 666  DQLLVDVSRRLKAALREEDSLSRLGGDEFILLLPG-TDEAQASQVATKLLAAVAQPCQIE 724

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
            + E+  T SIG A + +       + KNA+ AMY  K    N    F           + 
Sbjct: 725  QNELVSTVSIGIALYPNDGQDFETLSKNADAAMYRVKQASRNDFRFFTQEMQTHSARTLQ 784

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +   L  A+   E  L + P + L D  IVG EAL++W HP+ G IS +EF+ IAE+   
Sbjct: 785  LVNALRHALPRHEFELHFQPQVALQDGHIVGAEALLRWRHPELGMISPAEFIPIAEDSGQ 844

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I AI  ++L    R +  W D     P+ I +N+++       L   +  ++ +    P 
Sbjct: 845  ILAIGEWVLRTAVRQLKQWLDAGLR-PMVIAVNLSAVQFRHPNLMALVTRILDEAALPPE 903

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +E+  M +P  +  ++ +L + GI +++DDFGT  S LSYL     + +K + S
Sbjct: 904  FLELELTEAAAMDDPPAAIAIMNKLDEHGIRMSIDDFGTGYSSLSYLKKFKVNKLKIDQS 963

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +          AI+ +II +A ++    IA+ +     +  L   GCD +Q  +V+ PL
Sbjct: 964  FVRDISDDPDDKAIVTAIINLASSLGMHTIAEGVETASQLAFLRLQGCDEVQGYYVSKPL 1023

Query: 945  GFNSILKLLKE 955
              +     ++ 
Sbjct: 1024 PKDQFEAFVRN 1034



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 67/211 (31%), Gaps = 37/211 (17%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQ----------GIFSDGERQSLAVLGSGDIVWDW 421
           V    L  +L+ ++  Q   A    ++           + +  +R    +    D++++ 
Sbjct: 145 VALAALFSVLLAYSAKQAGAARVRANELQVDVNAQAVELVALNQRLQSTLDALPDLLFET 204

Query: 422 DIVRDRV-TTTPDIATILGLASGSMHGPIRNW--LPYIHINDRDNFRTILDSFVGYRRGR 478
           D+    +   +P  + +LG     +         L  +H                     
Sbjct: 205 DMDGRYLAYHSPR-SELLGKTLHRVLPVAVADICLAAVHE-------------ANAVGYS 250

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              + ++   D   HW  +         GD   +I ++ DITE+KK+   I        L
Sbjct: 251 HGKQIQLALPDGA-HWFELSASRKPGLPGDAPTFIVLSRDITERKKAEIKIER------L 303

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           T +    + L +    +   +    L P + 
Sbjct: 304 TKLY---AALSQCNQAIVRCSDASELFPIIC 331


>gi|117925669|ref|YP_866286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
 gi|117609425|gb|ABK44880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
          Length = 1070

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/594 (24%), Positives = 280/594 (47%), Gaps = 11/594 (1%)

Query: 367  IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
            ++  L  G V          +   +      +    + +     +  + D V   D+   
Sbjct: 465  VRTVLQLGDVERSASGEPVRMTGTVQDITDLKRTQENLDLAKYILDTTSDAVIITDVNNR 524

Query: 427  RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV 485
             +        I G +   + G        +H  ++ + F + +   +    GR   E   
Sbjct: 525  IIDVNHAYTKITGFSRDEVMGQNP---QVVHNEEQGEAFYSRIWQSLLQE-GRWSGEVWE 580

Query: 486  RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            R  + + +   + +R M N  G+   ++G+  DI+ QK + E +   A+ D LT +PNR 
Sbjct: 581  RRKNGELYPKWMTMRRMLNQYGETAFFVGVFVDISTQKATEEQMERLAYYDPLTKLPNRA 640

Query: 546  SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             F +RLT  +  +         V+++D++++K IN+  G  VGD +L+ +  RI E L+ 
Sbjct: 641  LFHERLTQSITTAKRYKR-HVGVVMLDLNRFKLINESYGYGVGDGLLIQVAERIVERLRE 699

Query: 606  PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             DI+AR+  + F I L+      +I   A  + K   MP  +   E+ +  ++G   + +
Sbjct: 700  SDIVARIGADTFAITLVDLKQEGEITGVANNLLKQFVMPFLVNGHELMLRTAMGIVLYPT 759

Query: 666  SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723
                +  +L++ E A+  AK +G N+   +   +S+  + R+ +++++  A+E  +  L 
Sbjct: 760  DGQDAETLLRHVENALGQAKQQGVNNYRFYSEEMSNISNKRLALEQEMHTALEQRDFVLY 819

Query: 724  YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
            Y P + L    + G+E+LI+W H + G IS  EF+ +AEE  +I  + L++LE    +  
Sbjct: 820  YQPKVNLQRGVVSGVESLIRWQHKQKGMISPVEFIPVAEETGLIVPMGLWILETACAEAK 879

Query: 784  SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
               D     P  + +N++++      L E +   ++ +   PS ++   +ES++MGN E+
Sbjct: 880  RITDYLGQ-PFTVAVNLSARQFQSRNLLESISETLNNSAIDPSMLEFEITESMMMGNVEK 938

Query: 844  SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
            S   L  +R +G++L +DDFGT  S LSYL   P +T+K + S +          AI+ +
Sbjct: 939  SIETLVAIRNMGVTLAIDDFGTGYSSLSYLKRFPINTLKIDQSFIRDLGVDSDDAAIVSA 998

Query: 902  IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            II MA+++   ++A+       +  L   GC+ +Q  + + PL    + +LLK+
Sbjct: 999  IISMAQDLNLHVVAEGAEKAEQVLFLKERGCETVQGYYFSRPLPQTDLERLLKD 1052



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +         A   +G   W W++  D    + +I  +L      +     +
Sbjct: 365 EQKQAELKLLESRHHLDRAQRLAGLGYWSWNLQGDEQFWSEEIYRMLHRPRAHVSASFES 424

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           ++ ++H +DR   R ++   +       + E R+  +D     ++       +++G+ +R
Sbjct: 425 YMDHVHPDDRQRVRDMVARVLKEPDLFFRVEHRIVRSDGNVRTVLQLGDVERSASGEPVR 484

Query: 512 YIGIANDITEQKKSLEGILCNAFQ------DNL--TGIPNR 544
             G   DIT+ K++ E  L  A        D +  T + NR
Sbjct: 485 MTGTVQDITDLKRTQE-NLDLAKYILDTTSDAVIITDVNNR 524



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 4/201 (1%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
           E A++   A   +    +  +    +R     I   L+ G  L+V+  G+  +Q     G
Sbjct: 183 EMALMGFTAVPDLGWGVVVHYRLSYQRKPFLRIAWGLLLGSALVVVFGGWLFMQ---VGG 239

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
               G+     R  LA+  S   +W+WD+V  +V     +  I  L  G+  G    +L 
Sbjct: 240 PLISGLERYQARLGLAMAASRIGIWEWDVVTGKVEWDEGMHQIFDLPKGAFDGTWEGFLA 299

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                D           +  +  R + E R +        + +R       +G     IG
Sbjct: 300 LFDGEDSARLEQCRQESLTEQL-RFELECRTQPVAGVQKTLSLRGELRMPEHGVEAHLIG 358

Query: 515 IANDITEQKKSLEGILCNAFQ 535
              DI+EQK++   +L +   
Sbjct: 359 ACWDISEQKQAELKLLESRHH 379


>gi|320105704|ref|YP_004181294.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Terriglobus saanensis SP1PR4]
 gi|319924225|gb|ADV81300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 649

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 152/576 (26%), Positives = 268/576 (46%), Gaps = 18/576 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  V         +    ER  LA   + + VWD D++ D++  +     I+GL +    
Sbjct: 60  LSDVTEQRSLDLELRKVEERYRLAARSTTEGVWDRDMLTDQIYYSARWQEIVGLPAVDFI 119

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   +W   +H  D    +              + E+R+R  D  + W+      + +  
Sbjct: 120 GTSADWENRVHPKDLLLGQQAQREMEEQNTLEFRTEYRMRHEDRGWIWVRNEGIIIRDQE 179

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               R +G   +IT +K              LTG+PNR S ++++   +++ +  +    
Sbjct: 180 NRPTRKVGSMKEITSEKSIE----------PLTGLPNRASSVEQIDHRMEMPSK-EQATF 228

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP--DILARLSGNRFGIILISE 624
            V+V+ +D + +IND  G A GD +L+ + RR+   ++     I  R++G+ F ++L   
Sbjct: 229 AVIVVGLDVFNRINDSFGRASGDAILIEIARRLDSTIQKDPLSIAGRITGDEFVVLLGRI 288

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                   +A  ++  ++ PI    + +T++ASIG A       ++  ML++AE+AM+ A
Sbjct: 289 AGVDDAITYANLLQHVLSTPIEHQHQFLTISASIGIAMGDEGYHSAETMLEDAEVAMHQA 348

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F   +      RV ++ DL  A + +E  L Y P + L   ++VG EAL+
Sbjct: 349 KRAGKAQCILFGAHMRERTRRRVELETDLRGAFQRNEFILHYQPKVLLETGKLVGFEALV 408

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIA 801
           +W HP  G IS +EF+  AEE  +I  I  + L    R    WRD     P + + +N++
Sbjct: 409 RWQHPVKGMISPAEFIPYAEETGLIIDIGRWTLRNAIRQAKVWRDSGLVAPDVTMAVNLS 468

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +K      L   +   +++  +    + L  +ES +M N   ++  L  LR +G+ L LD
Sbjct: 469 TKQFERPGLIAEIAKKLAEEDFPADCLTLEVTESALMDNIAGAKKSLDGLRSLGVHLDLD 528

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +PFD++K + S +     +++  AI +SI+ + + +  T+IA+ I 
Sbjct: 529 DFGTGYSSLSYLNRLPFDSLKIDQSFVHELTDSQESKAIAQSILQLGRTLNMTVIAEGIE 588

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  L ++GC Y Q    + PL    I +LL  
Sbjct: 589 TAEQSLLLMQVGCLYGQGYLFSKPLDAEGIRELLTA 624


>gi|119896913|ref|YP_932126.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119669326|emb|CAL93239.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 815

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 160/691 (23%), Positives = 308/691 (44%), Gaps = 18/691 (2%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           R    +       +     +  ++     +      I LA I+L +        +  +  
Sbjct: 134 RRPLLLERNEVGFLQFGVSVSVLAAARQAIIQQGTLIALAEILLTFILLSGIGYLLTHNL 193

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLATG 394
             LL  +  +               LD+ + +        L     ++  T+ Q V    
Sbjct: 194 GRLLAGSRAI-----------AEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGELQ 242

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  + +  ER +LA+ G+ D +WDWD+   +V  +     I+G               
Sbjct: 243 RTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDALAS 302

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           Y+H ++ + +R ++ + +     +   E R+R  D +  W++ R     ++ G   R  G
Sbjct: 303 YLHPDELETYREVMRAHLRGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRMAG 362

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             +DI  +K++ + ++ +A  D LTG+PNR  F++ +   L     D+N R  V+ I+I+
Sbjct: 363 SISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQQALGHQRRDENARFAVLAINIE 422

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++  IND  G A GD++L  +   I   ++  D+ AR+ G++F ++L   + S +    A
Sbjct: 423 RFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALRVA 482

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++ +   +      R + +   IG A     +  +  +L++A+ A++ A+    + VE 
Sbjct: 483 ESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPVEF 542

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   + +     + ++ DL  A+    L + Y PI+ L D  +   EAL++W HP  G +
Sbjct: 543 FHASMHTQAVRALQLEADLRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHGLL 602

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELC 811
              EF+ +AE L +I  + + +L  + RD++ W        +  + +N++++ L    L 
Sbjct: 603 PPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYPGRALPSVSVNLSARQLSRPNLA 662

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  +I       S ++   +ESV+      ++ +L +LR+ G S+ +DDFGT  S LS
Sbjct: 663 DELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSALS 722

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  IP D VK +G+ +   T+      I+R  I +A ++   ++A+ I  E     L  
Sbjct: 723 YLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVLYG 782

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           M CDY Q    + PL  +   +LL    P  
Sbjct: 783 MDCDYGQGYLYSRPLEADDARRLLAPSNPGT 813


>gi|91224928|ref|ZP_01260187.1| hypothetical protein V12G01_10918 [Vibrio alginolyticus 12G01]
 gi|91190174|gb|EAS76444.1| hypothetical protein V12G01_10918 [Vibrio alginolyticus 12G01]
          Length = 815

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 148/554 (26%), Positives = 258/554 (46%), Gaps = 13/554 (2%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +        I G  S  + G     L   H +   
Sbjct: 267 QLSLASQIFNNSQEGMVITDRNANIIDVNTAFTQITGYRSEEVIGKNPRILRSGHHD--Q 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 GFYQQLWHQLENK-GQWKGEFINRKKDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   L  L   ++    +       + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLLSLLEQHIETGHKNQQT-FATLFLDIDHFKHINDS 442

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F IIL   ++ + + +    +     
Sbjct: 443 MGHFCGDQLLSKLAIRLQDVLHLNAHVARIGGDEFVIILPDIHSDVALLETVGDILSVFQ 502

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + V+ SIG A +      S  +LKNA+ AMY AK  G N    +      
Sbjct: 503 QPFDLANHDSLRVSTSIGIALYPRDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 562

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L L + P   L    IVG+EAL++W HP++G +  ++F+ 
Sbjct: 563 KSVSHVRIQSALHQAIEKQQLRLEFQPQYNLEQNTIVGVEALLRWQHPEFGPVPPADFIP 622

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++L++      +W DQ       I +N+++  L  +   + +  ++ 
Sbjct: 623 IAEKTGLIQSIGEWVLQQACLQGNAWLDQGIEFG-KIAVNVSALQLQQSNFIQRLSTILD 681

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T Y   R+ L  +ES ++ +P+++   L +LR++GI ++LDDFGT  S LSYL  +P +
Sbjct: 682 NTGYPAQRLDLEITESFLLIDPQQAIASLNQLRELGIEISLDDFGTGYSSLSYLKGLPIN 741

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   S     AI+ +II M K +   ++A+ I        L   GC Y Q 
Sbjct: 742 KLKIDRSFVSDVPSNSDSNAIVNAIIAMGKTLSLKVVAEGIETREQADYLFEKGCIYGQG 801

Query: 938 SHVASPLGFNSILK 951
              + P+    + +
Sbjct: 802 YLFSQPVSAGKLFR 815



 Score = 45.3 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 7/187 (3%)

Query: 350 WFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
             +   + +T     + ++   L      I   I     Q                +   
Sbjct: 93  GELLAVLTLTHPNDQSTVVSAWLSAIAGRISFDINLHCQQEQTRHQSAEIKPTPTLQEFI 152

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +    D VW   +      T   +       +  + G   +          + F    
Sbjct: 153 DCLE---DHVWIKGMDGLYSMTNRSVENAWQKTNSEIIGK--DDFALFSHERAEKFIDAD 207

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              V      +  E R    +N   W+     P+ +  G+++  +G+  +IT ++K +E 
Sbjct: 208 KLVVATGTQNIVEECRQIDENNNPTWLETIKSPVRDHAGNLIGILGMTRNIT-RRKMVET 266

Query: 529 ILCNAFQ 535
            L  A Q
Sbjct: 267 QLSLASQ 273


>gi|229181548|ref|ZP_04308874.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228601916|gb|EEK59411.1| Sensory box/GGDEF [Bacillus cereus 172560W]
          Length = 909

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 343/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKKPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L   +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLFAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R        +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKSRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVTAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIESISQILNDVQVDPKYVTLELTERIAMVDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|304311536|ref|YP_003811134.1| hypothetical protein HDN1F_19060 [gamma proteobacterium HdN1]
 gi|301797269|emb|CBL45489.1| Hypothetical protein HDN1F_19060 [gamma proteobacterium HdN1]
          Length = 916

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 146/582 (25%), Positives = 252/582 (43%), Gaps = 13/582 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +I+ + A     +               S   ++  +           ++ +       
Sbjct: 326 GIIEDITAHKQTEERSLQSESTLRQIFDTSNAGIFLVNKEGIITLANRRMSELFHCPHEQ 385

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G    ++ +IH +DR+  +  +   +      +  E      D    W  +  R   N
Sbjct: 386 LIGSK--YVAHIHPDDREAGQQKMLDLIASEIDSVDLERLYWREDGSQFWGNLCGRRFKN 443

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++G     +G+  D+T++ ++ E I   AF D LT +PNR+  LDRL   +  SA    L
Sbjct: 444 ADGTTAGLLGLIMDVTDRHQAEEEIRTLAFYDPLTQLPNRRLLLDRLQQGMTASARSQ-L 502

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ ID+D +K +ND LG  VGD +LVS+ RR+   ++  D +ARL G+ F ++L   
Sbjct: 503 HGALIFIDLDNFKSLNDTLGHDVGDQLLVSVARRLQTCVREGDTVARLGGDEFIVMLTEI 562

Query: 625 -----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
                ++          +  ++  P ++   E+  T S+G A +     +  EMLK A++
Sbjct: 563 HGTTNDSISIAETIGHKIISALNKPYSIGTHELRSTPSLGIALFLGHDTSVDEMLKRADM 622

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N +  F             ++ +L  A+E  E  L Y P I     +  G
Sbjct: 623 AMYQAKAVGRNTLRFFDPQMQARVNARAHMEAELYRAIEQQEFMLFYQPQIN-ATGDCTG 681

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W       IS ++F+ IAEE   I AI  +++    R    W+       + + 
Sbjct: 682 VEALLRWQPTAQSMISPAQFIPIAEETGQIIAIGGWVVLEACRQQAIWQKNPETRHLNVA 741

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI++K    +     +   I +T   P  IKL  +ES+++ +   +   +  L  +GIS
Sbjct: 742 INISAKQFQHSSFVHDLHEAIQQTGADPKHIKLELTESILLADIREATQKMATLGGLGIS 801

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            ++DDFGT  S LSYL  +P   +K + S +          AI ++II + K +  ++IA
Sbjct: 802 FSVDDFGTGYSSLSYLKLLPLQQIKIDQSFVRDILNDPNDRAICQAIIALGKALGLSVIA 861

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + +      K L   GC   Q    A PL        L  + 
Sbjct: 862 EGVESSPQWKMLLSDGCSEAQGYLFAMPLPAKEFTTWLNTKN 903



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 27/290 (9%)

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDND--IIQPALVGGLVLIVILIGFTVIQH 389
           KG   A L I   +L+ +    L             +    L G L+ +++ I     QH
Sbjct: 16  KGTAGARLTIATPLLLSVIASLLLFPSQGDQAEARLVWIVLLCGSLMSLLLWITLRSHQH 75

Query: 390 VLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASGSMH 446
                      +    +  S  +      V           +    +     G       
Sbjct: 76  YRRELEAQHAELQKSHDDFSALIASIPGTVIRCKTAPSWQVLYMNGERDISTGQPVNRFL 135

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                +   +H +D       +           + E+RV   D  + W  +  R   ++ 
Sbjct: 136 SGELTYRELVHPDDMPRIDRAVRRASAADHA-YELEYRVLHVDGNWRWASLNGRFEYDAQ 194

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G   ++ G+  D TE+  + + +               +   + L   +      ++  P
Sbjct: 195 GRPEQFEGVIFDTTERHLAQQEL---------------RELTEHLPVAIYHYQLKEDGTP 239

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            ++ I  D  ++I   +GI   +  +++ +  I +++   D  A +  +R
Sbjct: 240 RLIYIS-DNVERI---MGIPAAE--MIASSANIYDIVHPEDREAFIEADR 283


>gi|217975002|ref|YP_002359753.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217500137|gb|ACK48330.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1490

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 264/563 (46%), Gaps = 12/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  +    + A   + + V   D+             I+G+ S  + G        +
Sbjct: 925  QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSTDLVGQSFTQFVQM 984

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D   + +   +         E  +  A  Q   + + +  M ++NG +  Y+ + 
Sbjct: 985  N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1039

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D++
Sbjct: 1040 SDITERKQTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1098

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + N+   I   A  
Sbjct: 1099 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIAER 1158

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            + + I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + + 
Sbjct: 1159 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1218

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I +  +++++G+EALI+W HP  G I 
Sbjct: 1219 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1278

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W  +       + +NI++      +  E 
Sbjct: 1279 PDIFIKVAEACGLIVDIDRWVLRQACVQGAQWAKRYGAT-FKLSVNISAVHFRQPDFIED 1337

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q ++ +T    + + L  +E V+M     ++  L RL+ +GI + +DDFGT  S L+YL
Sbjct: 1338 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1397

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1398 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457

Query: 932  CDYIQDSHVASPLGFNSILKLLK 954
            C  IQ  + A P+      + L+
Sbjct: 1458 CYIIQGYYFAKPMCVADFERYLE 1480



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + +      +Q +    +R   ++ GS   +W+W         
Sbjct: 775 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 834

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DR+      DS +     R + E+R +  D 
Sbjct: 835 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 891

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP++ +    +I R  GI +DIT Q++  + +   A
Sbjct: 892 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 936


>gi|297537382|ref|YP_003673151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297256729|gb|ADI28574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 765

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/566 (25%), Positives = 258/566 (45%), Gaps = 20/566 (3%)

Query: 407 QSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDN 463
            S+A     S + +   D     +        I G +   + G   R +    H  + + 
Sbjct: 194 LSIAATAFESHEGILVTDANNVILRANQAFLKISGYSEEEVIGQSPRLFRSGKH--EVNF 251

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F  + +S      G  + E   +  + + + + + I  +  +NG +  Y+    DIT  K
Sbjct: 252 FDALWNSI--NNTGMWEGEIWNKRKNGEVYPVHLTITAVKANNGKVTNYVSTLTDITVSK 309

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + I   AF D LT +PNR+  +DRL   L  SA     R  ++ +D+D +K +ND L
Sbjct: 310 AASDEIQRLAFYDPLTQLPNRRLLVDRLNQALANSARSGQ-RGALLFLDLDHFKTLNDTL 368

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMR 638
           G  +GD +L     R+   ++  D +AR+ G+ F + + + ++     + +       + 
Sbjct: 369 GHDIGDLLLEQTATRLLACVREGDTVARIGGDEFVVFIENLSDQPFDAAAQAEIVGEKIL 428

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             + +P  L        +SIG   +  S++   E+LK A++AMY AK  G N +  F  +
Sbjct: 429 NELNLPYLLSSHRYFNASSIGITLFNGSELELEELLKQADIAMYQAKKAGRNTLRFFDPN 488

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     ++ DL  A+EN E  L Y   +   D   +G EALI+W+ PK G +S   
Sbjct: 489 MQEVINARVELERDLRQAIENKEFQLYYQLQVDG-DGRSLGAEALIRWNQPKRGLVSPFN 547

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  I  ++L+     + +W        + + IN++++     +    +Q 
Sbjct: 548 FIPLAEETGLILPIGQWVLDAACSQLKAWEQNPLTNHLSLSINVSAQQFKQADFVSQVQT 607

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     +P+ +K+  +ES+++ N E   + +  L+ IGI   LDDFGT  S L YL  +
Sbjct: 608 SVQHHAINPNLLKIELTESMLLDNVEHIIITMVALQAIGIRFELDDFGTGYSSLQYLKKL 667

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +   TE     AI+R+II MA+ +   +IA+ +  +  +  L   GC++
Sbjct: 668 PLQQLKIDQSFIQDITEDSSDQAIVRTIIAMARGLNIDVIAEGVETDNQLAYLRNYGCNH 727

Query: 935 IQDSHVASPLGFNSILKLLK--ERFP 958
            Q      P   N    LL+   R+P
Sbjct: 728 FQGYLFGRPAPINEFETLLESSRRYP 753


>gi|146278220|ref|YP_001168379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17025]
 gi|145556461|gb|ABP71074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 832

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 143/585 (24%), Positives = 254/585 (43%), Gaps = 21/585 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F +++ V         +     R       +  ++W  D+    V  +     + G +  
Sbjct: 244 FGILEDVHERHLSLDHLRESEARFRAFADDAPVMIWVTDVEGHNVFVSRSWLKVTGQSPE 303

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W   IH  DRD    I +S +  RR     EFRVR  D  + W+I   +P  
Sbjct: 304 EAVN--EGWAAVIHPEDRDAVVAIWESALR-RRVPFTNEFRVRRQDGSWCWVIDVGQPRV 360

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            ++G  + YIG   DI+ ++++ +        +   A  D LTG+PNR  F D     + 
Sbjct: 361 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYEEAV- 419

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +A        V ++D+D +K +ND  G  VGD VL  +  R+   ++  D +ARL G+ 
Sbjct: 420 -AALAGGRSVAVHMLDLDGFKAVNDTRGHPVGDQVLRQVADRLRTSVRSTDTVARLGGDE 478

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +I        +  D A  +  +++ P N+      V AS+G A       ++ E+++ 
Sbjct: 479 FAVIQTPVRTEQEACDLARRLIAAVSKPFNIDGTVPEVGASVGIAFARGRGDSAEEVMRF 538

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G      F          R  +K  L  A+   EL + Y P+I L D  
Sbjct: 539 ADVALYAAKQAGRGTFRVFDEATDIHLQSRQKMKSALRAALGQGELSVFYQPLIGLADGR 598

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W     G I+  +F+ +AEE  +I  +  ++L         W D      +
Sbjct: 599 VTACEALMRWHRKGAGWITPDQFIPVAEEAGLIGVMGEWVLHEACAHAARWPD-----NV 653

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++        L + + + +  +   P R++L  +ESV++   +R+  +L  LR +
Sbjct: 654 SLAVNLSPLQFHGGGLVDVVVSALRASGLPPERLQLEITESVLLDPTDRNITVLQELRAV 713

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G+ + +DDFGT  S L YL   PFD +K + S +      R   AIL+++  + ++++  
Sbjct: 714 GVKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPHAREALAILKAVAGLGRSLDMR 773

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              + +  +  +      G D  Q    + PL   +I   +  R 
Sbjct: 774 TTVEGVETQAQLDCAIAEGVDEAQGFFFSRPLPAPAITSFISGRL 818



 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 74/248 (29%), Gaps = 16/248 (6%)

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI---- 345
              +              + +  +  A+  L         G   +E    L  AW+    
Sbjct: 23  WVALFDGVAHPVLIKNSESRVIFMNSAACELLGCQRGELEGRAEHELVGGLTAAWLHDLD 82

Query: 346 --LIFIWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
              +    + +   +         +      G  L+V     T ++         + +  
Sbjct: 83  AEAMLSGSLTVEQVVPGPAGLRRFLVSRKPAGEHLVVTFFEITELRRT------EEALRE 136

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                   +  +  + +           +  +  + GL   +    + +W   +H +DR 
Sbjct: 137 REAHLRGLLDLNPLVPFSISPDGTLSDISDRLVDLTGLPRDT--SHVDDWWAAMHPDDRP 194

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R      V    G    E R+R  D Q+ W   R+    +  G I R+ GI  D+ E+
Sbjct: 195 ELRAAWAQAVR-DGGSFDAEHRLRMPDGQYRWFRARVVARRDEEGRIDRWFGILEDVHER 253

Query: 523 KKSLEGIL 530
             SL+ + 
Sbjct: 254 HLSLDHLR 261


>gi|114319238|ref|YP_740921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225632|gb|ABI55431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alkalilimnicola ehrlichii MLHE-1]
          Length = 857

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 145/580 (25%), Positives = 252/580 (43%), Gaps = 14/580 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            VI    A            E+  L      GS D +   D     +   P    I G  
Sbjct: 278 AVIALFAARAGTELARHQAEEQLQLIDQVFEGSRDAIIITDAQTRILQVNPAFEAISGYR 337

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G     L   H      F   +   +  R G  Q E   R AD + +  ++ +  
Sbjct: 338 EEELVGRTPRLLQSGHQG--PRFYREMWEALKSR-GHWQGELWNRRADGETYPSLLSVSA 394

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           ++N N ++  YIGIA+DIT  K + + I   A  D LTG+ NR+  L        L    
Sbjct: 395 VTNDNDEVTHYIGIASDITSHKAAEQHIDYLAHYDTLTGLGNRR--LLEEELERMLRNAR 452

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +  +D+D++K IND LG   GD +L  +  R+ +L      L R+ G+ F I+ 
Sbjct: 453 GGRPFALFFLDLDRFKNINDTLGHESGDRLLEEVADRLRDLAGPQATLCRIGGDEFAILA 512

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              ++       A  + + I+ P  + ER + VT S+G A           ++  A+ A+
Sbjct: 513 PGLSHRQTA-GIARQLVEGISRPYEITERPLVVTCSVGVAVHPRDGTRREALISAADTAL 571

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           ++ K  G NH +          ++R+ ++ DL  A+   E  L Y P++      + G E
Sbjct: 572 HYVKAHGSNHYQFHEPGMTAAAAERLHLENDLREALLRGEFELYYQPVLDTERLTVCGAE 631

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G I    F+ +AEE  +I+ I  ++L         WR    +  + + +N
Sbjct: 632 ALLRWHHPEAGLIPPDRFIPLAEETGLIRPIGTWVLREACAQAARWRR-LGLTGMTVSVN 690

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ +    +EL + ++  +     +P  + L  +ESV+M     +   L  L+ +G+ L+
Sbjct: 691 VSGEQFWRDELPQAVRQALEAQALAPDALVLEITESVLMHGSANTETRLRELKAMGVGLS 750

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LSYL   P DT+K + S +      E    + +++I M   +   ++A+ 
Sbjct: 751 LDDFGTGYSSLSYLKRFPIDTLKIDKSFVRDMVRDEHDRTLAQTVIAMGHGLGLQVVAEG 810

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +     +  L R  CD +Q  H + PL   ++ + +++  
Sbjct: 811 VESAEHLPLLRRARCDRVQGYHFSRPLPARALSRWIQQHQ 850



 Score =  101 bits (252), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 8/136 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
               +  S  + +           V  +  I  +LG          + W   +H +DR+ 
Sbjct: 21  LHRVLEASPAVTYALTRDGQSLRPVYISAHIEELLGYPVADWMADPQFWRQCLHPDDRER 80

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                   +    G + +E+RVR  D  + W+  R+R M   +G     +G+  DIT + 
Sbjct: 81  VLAQSARHL--PEGLVDHEYRVRHRDGSYRWVHDRLRLMPARDGRPAMAVGVWQDITHRA 138

Query: 524 KSLEGILCNAFQDNLT 539
           ++   +   +    LT
Sbjct: 139 RADRLLRTLSH---LT 151


>gi|229193553|ref|ZP_04320497.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228589858|gb|EEK47733.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 909

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 343/868 (39%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P      
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSDFFYL 108

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           +       L               +       +      + A F   +Y++   ++ I T
Sbjct: 109 L------FLVSFTFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHIFT 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T +    + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   +       + + +++      L   +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIIVIGLIITFSFVLIRHSLVRKQNKILLFAQMQFNSELEKQIKLRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R        +++ +   P+      I  
Sbjct: 401 YYSLIYEEDLEEMINAFHRVKKGY--SISLEIRAYHKSRDIYYLHVTAVPIFLKE-KISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERIATSNMKLARLAGDEFTILIENYKKKPDVQ 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N 
Sbjct: 577 KIADRIVTAMNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   ++
Sbjct: 697 GDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQ 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIESISQILNDVQVDPKYVTLELTERIAMVDEKETLLRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  N  +K L++
Sbjct: 876 QKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|42784471|ref|NP_981718.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42740403|gb|AAS44326.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 909

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 174/870 (20%), Positives = 351/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIIVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIYI 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  F    +NL    L +        L S+LI++      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPEKQEQVLLTPKLGEAIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 575 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITKKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L E +  +I+     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  +  +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 903


>gi|34496603|ref|NP_900818.1| hypothetical protein CV_1148 [Chromobacterium violaceum ATCC 12472]
 gi|34102457|gb|AAQ58823.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 795

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 147/553 (26%), Positives = 257/553 (46%), Gaps = 15/553 (2%)

Query: 407 QSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             LA      S + +   D     +        I G A     G              + 
Sbjct: 240 LRLAAKVFENSAEGILILDAGARIIAVNDAFTRITGYAEEEALGKASRIFSA------EQ 293

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                        G  Q E   R    Q++   + I  + + +G +  Y+ + +DIT++K
Sbjct: 294 QARAAMQQALADCGHWQGEMLDRRKGGQWYPAELSISALRDEDGLLSNYVAVFSDITQRK 353

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E +   A  D LT +PNR      L   L     +D  R  VM ID+D++K IND  
Sbjct: 354 EAEERLQFLANHDPLTRLPNRSRLTASLDEALTRMDGEDG-RLAVMFIDLDRFKLINDSF 412

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +  R+  ++    +LARL G+ F +++   ++  ++AD A  +  ++  
Sbjct: 413 GHQVGDQLLCEIAIRLSRVVGERGMLARLGGDEFTLLMSGFDSHHQLADMASDILAALGK 472

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P+ L   E+ +T SIG + +      +  +LKNA++AMY AK  G N  + F   +++  
Sbjct: 473 PLCLEAHEVFITGSIGISVFPHDGRDARTLLKNADVAMYRAKEAGKNTYQFFDIGMNTQT 532

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R++++  L +A+E  E  L Y P +   +  + G EAL++W HP+ G +  + F+ +A
Sbjct: 533 FERLLLENGLRMALERHEFELHYQPQLSAGERALAGAEALLRWRHPQLGLVPPARFIALA 592

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +IK I  ++L    R + +W  Q    P  + +N++ +      L   +   +   
Sbjct: 593 EETGLIKPIGDWVLREACRQLAAWDAQGLRVP-RLAVNLSPRQFGQPSLPAKVAGALQAA 651

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +  R++L  +ES++M +P  +  LL  L+ +G+ L++DDFGT  S LS+L   P DT+
Sbjct: 652 GLAAGRLELEITESMIMQSPTEAVSLLSELKSLGVWLSIDDFGTGYSSLSHLKRFPLDTL 711

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G    +   AI  +I+ MAK ++  ++A+ +  E     L   GC  +Q  H
Sbjct: 712 KIDQSFVEGLPDDDDNAAIAEAILAMAKKLKFQVVAEGVESEEQAAFLEGKGCHVLQGYH 771

Query: 940 VASPLGFNSILKL 952
              PL       L
Sbjct: 772 FGRPLPAGEFAAL 784



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 5/142 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 +      +R    V  S   ++            P +A I+G     M G    
Sbjct: 108 QARQEQKAKREAEDRYLALVEQSLVGIYIMQ-DEKLAYVNPKLAEIMGYQPEEMEG--MT 164

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +   + +  R  L          + Y  R    D     M +  R +   NG    
Sbjct: 165 MPQLLVPGEAERLRQQLLRRFRDNISVMHYATRGLRKDGVLVDMEVHSR-LFELNGR-KA 222

Query: 512 YIGIANDITEQKKSLEGILCNA 533
            IG+  DI+E+  +   +   A
Sbjct: 223 VIGVVMDISERLLADTNLRLAA 244



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 4/109 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+    +      A  +G+++ S+ G            D    R      +     R   
Sbjct: 13  DMDGRYLLVNAAYARRVGVSAESLLGRRPE--DVFDAEDARQIREQDQQVLNLLSPRQFD 70

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           E  V   +    +++    P+ +++G       +  DIT+ ++  +   
Sbjct: 71  EHFVL--NGVETYLLASKFPLFDADGRPAGVGSVDTDITQARQEQKAKR 117


>gi|119477208|ref|ZP_01617444.1| sensory box/GGDEF family protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449571|gb|EAW30809.1| sensory box/GGDEF family protein [marine gamma proteobacterium
           HTCC2143]
          Length = 700

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 281/642 (43%), Gaps = 12/642 (1%)

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                Y   +    A L       I + FI    A+T      +++      +    +  
Sbjct: 53  LIICDYLMPRFSAAAALSTLKASGIDLPFIIASGAVTAEDAVSLLKEGAHDFMDKGALAR 112

Query: 383 GFTVIQHVLATGYFSQGIFSDG---ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
               I+  L      +         E  S A+      V       +            G
Sbjct: 113 LVPAIERELREADVREQRRQAEAQVEVLSQALEQCPASVVITSPDGNIEYVNSYFEKASG 172

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            ++    G    +   +   + ++  + L   V   + R   E R   AD +  W  ++ 
Sbjct: 173 YSASDAKGRSLGFT--LQKEEHEHLMSELSQLVTEGQ-RWSGEMRSIRADGEMFWEYVKA 229

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ N +  +  YI +  DIT Q+   + +L  A  D+LTG+ NR   +++LT  L  + 
Sbjct: 230 SPLMNEDKSVSHYIVVKEDITVQRDYEQQLLRQAHYDDLTGLANRVLLVEKLTQALQNAQ 289

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            + N +  V+ ID+D +K +ND +G ++GD +L    +R+   ++  DI+AR+ G+ F +
Sbjct: 290 QN-NSQLAVLGIDLDDFKNVNDSVGHSIGDTLLKQAAQRLSSCIRSGDIVARMGGDEFVL 348

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L   +++      A  + +  + P N+  R+ +VT SIG + +      +  ML+NA+L
Sbjct: 349 VLPLLSDAKNAELMAQRIVQKFSKPFNIAGRQYSVTCSIGISVYPDDTSDAHMMLRNADL 408

Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY +K +G +  + F     R   +R+ ++E L   V+N EL L Y PI  L  ++I G
Sbjct: 409 AMYQSKDQGRDQYQFFTEDINRRLVERLDLEEKLRNVVDNGELALQYQPIFNLETQKIAG 468

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W       I    F+  AE + +I+ I+ ++L    R+   +   +    + + 
Sbjct: 469 FEALVRWPQADGSVIMPDSFIPAAENIGVIQKIDEWVLASACRETAPFL-LSGDDNLCLA 527

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+   L D      + A +      P  ++L  +E V++ + E +   +  L ++GI 
Sbjct: 528 INISPLQLEDPGYVAFVMAQLEANQLEPRHLELEITERVLVSDAETTDRNIKALTELGIR 587

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           +++DDFGT  S L YL   P  T+K + S +           ++ +II MAK ++  +IA
Sbjct: 588 MSVDDFGTGYSSLGYLKRYPLHTLKIDRSFVADMDVDDSARRLVETIILMAKGLQMDVIA 647

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + I  E     L  +GC   Q   ++ P+   S+ + +  + 
Sbjct: 648 EGIETESQQVLLHELGCSQAQGYFLSRPVSLQSLAQKISAQN 689


>gi|167590038|ref|ZP_02382426.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia ubonensis Bu]
          Length = 804

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 154/664 (23%), Positives = 274/664 (41%), Gaps = 14/664 (2%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI--WFIG 353
           L  +   Y      I        ++         G        +L     L     + + 
Sbjct: 122 LDAVLVVYDDGEHGILTERDIVRLIAGGGLQGAVGEHASRPLQMLATKQSLYAAHRYMMQ 181

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA--- 410
             M      D+      L+    ++  +    V +   A     + +        +A   
Sbjct: 182 QNMRHIGIHDDHGALTGLLSFADVLQGIEHEYVNELRSALRERDEALGLARFNLRMADRV 241

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              + + +   D              + G     + G   + L        D +R +  S
Sbjct: 242 FESALEGIMVTDRHARIERVNQAFTRLTGYTEDEVVGRDPSLLSS-GRQTPDFYRKLWHS 300

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 G  Q E   R    +     + I  + +++G I  Y  I +DIT+++++ E + 
Sbjct: 301 L--TTDGHWQGEIWNRRKSGELFLEYLTITSIRDNDGQISNYAAIFSDITQRRQAEERLG 358

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+ NR  F +RL   +  +      +  VM +D+D++K +ND LG   GD+
Sbjct: 359 YLATHDVLTGLANRTLFEERLAHAIVQAKRRSR-KVAVMYVDLDRFKLVNDTLGHNAGDE 417

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL  +  RI   ++  D +AR+ G+ F ++L   ++   +   A  +   +   I++  R
Sbjct: 418 VLKVVAGRIVAGVRASDTVARMGGDEFALVLEEFDDVRDVGRIARKLLDEVGQAIDIGGR 477

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE- 709
           EI VT SIG + +      + +++  A+ AMY AK RG N  + F      S    ++  
Sbjct: 478 EIFVTPSIGISIYPDDGTEAEQLMLLADQAMYGAKSRGRNVFQFFESKMTSSAMEQLETL 537

Query: 710 -DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E  L Y P   L    IVG+EAL++W HP  G +   +F+ +AE   +I 
Sbjct: 538 GELHRALEQNEFRLFYQPQYDLSSGRIVGVEALLRWLHPHKGLVPPGDFIGLAERSALIV 597

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R    W D+       I +N++++    +     +  ++S+T   P  +
Sbjct: 598 PIGKWVLREACRQARRWLDEGFEFG-RIAVNVSARQCFADSFLADLTTILSETALPPEYL 656

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L   ES+ M   E   +LL  L   GISL +DDFGT  S L YL  +P DT+K + S +
Sbjct: 657 QLELLESMAMNTREEIGILLRELATRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDRSFL 716

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI+R+I+ M + +   ++ + +  E  +  L  +GC  +Q   +A P   
Sbjct: 717 ADCGTDSPDDAIVRAIVAMGRALGLDVVMEGVETEKQLAFLQEIGCHQVQGFLLARPQPA 776

Query: 947 NSIL 950
             ++
Sbjct: 777 EQLV 780


>gi|253996028|ref|YP_003048092.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982707|gb|ACT47565.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 836

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 138/563 (24%), Positives = 248/563 (44%), Gaps = 18/563 (3%)

Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            + +      +A     S D +   D     +       TI G ++  + G   R     
Sbjct: 275 ALKNAETSLRIAATAFESSDGILITDAGCSILQVNSAFTTITGYSAEDVVGKNPRILSSG 334

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D+  ++ + D       G    E   R  +   +   I I  + + +G +  Y+ +
Sbjct: 335 RH--DQLFYQALWDRV--NTTGTWCGEIWNRRKNGDIYPERITISEVKDKDGKVTNYVSV 390

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E K S E I   AF D LT +PNR   LDR+      S+     +  ++ +D+D 
Sbjct: 391 FTDISESKASSEQIEHLAFYDPLTNLPNRLLLLDRVRQAFSSSSRTGK-KGALLFVDLDH 449

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKI 630
           +K +ND LG + GD +L     R+   ++  D +AR  G+ F ++L   +      +   
Sbjct: 450 FKVLNDTLGHSTGDLLLKLQAERLSHCVRAGDTVARFGGDEFVVVLEDLDRNATEAAAIA 509

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +  ++  P      +   T+SIG   ++  +    ++LK A+++MY AK  G N
Sbjct: 510 EQIGNKILSTLHEPCQFGTHQYQSTSSIGITLFSGDEHEIEDLLKQADISMYQAKKAGRN 569

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F  +      V   ++ +L  A+E  +L L Y   +   ++ +VG EALI+W HP+
Sbjct: 570 TLRFFDPAMQEKLSVRASLESELRYAIEKQQLALYYQVQVD-DNQRMVGAEALIRWIHPE 628

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAEE  +I  +  +++      +  W        + I +N+++      
Sbjct: 629 RGTVSPIEFIPIAEESALILDVGHWVINTACMQLAEWAKSVEKKHLMIAVNVSAHQFRAL 688

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  +  Q  I       SR+KL  +ESV++ + +     +  L+ +G+ L+LDDFGT  S
Sbjct: 689 DFVQSTQQAIDLHKIDASRLKLELTESVILEDVDDVIAKMHALKALGVKLSLDDFGTGYS 748

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P D VK + S +           ++++II +A N    +IA+ +  E+++  
Sbjct: 749 SLSYLKKLPLDQVKIDQSFVRDLAYDPNDAIMVKTIIDLANNFRINVIAEGVETELELDI 808

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   GC   Q      P+    +
Sbjct: 809 LKGYGCRLYQGYLFGRPVPIEQL 831



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 70/257 (27%), Gaps = 12/257 (4%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLLIPA 343
           I  S  +    L+  +   P +      +     ++      I+  +   Y        A
Sbjct: 37  IALSYFSIPFGLWYFAKKRPDIPYRWLMVVFGVFIVACGVTHIFDIVNIWYPSYWASAYA 96

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGYFSQ-GIF 401
                +      +A+   +   +  P+     VL   +      ++  +           
Sbjct: 97  KAFTGVVSFATAVAVWWIMPLALKAPSAQSLQVLNQALARSHAELETRVQQRTAELTSAL 156

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM--HGPIRNWLPYIHIN 459
           +   R S A+      V+  DI    V            +   +      + +       
Sbjct: 157 NQSHRLSEALDHIPAFVYIKDINGKYVYANRMTLDFFKCSVDDLVQIDEGKYFSARTLEK 216

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIAN 517
            R      +D  V  R      E    + D++    +    P+    ++  I    GI+ 
Sbjct: 217 SR-----SVDKSVIERGEDACEEIEAVSDDDKKRTFLQIKTPIYENEADRKIWGLCGIST 271

Query: 518 DITEQKKSLEGILCNAF 534
           DIT  K +   +   A 
Sbjct: 272 DITALKNAETSLRIAAT 288


>gi|119945428|ref|YP_943108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119864032|gb|ABM03509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
          Length = 674

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 148/552 (26%), Positives = 265/552 (48%), Gaps = 16/552 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFV 472
           S + +   D  +  +        I G +S    G   + L   +H      F   +   +
Sbjct: 119 SQEGMMVTDASKIILRVNHAFTHITGYSSDDAVGQTPSLLKSGMH---NKAFYATMWKKI 175

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G  + E   R  + + +   +RI  + N+ G +  Y+    DIT  K +   I   
Sbjct: 176 -NSTGLWEGEILTRRKNGEIYPEYLRITAVKNAQGIVTNYVATRTDITASKAASNEIEKL 234

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LT +PNR+ F+DRL   L LS T    R  ++ +D+D++K +ND LG  +GD +L
Sbjct: 235 AFYDPLTQLPNRRLFIDRLNQALALS-THSRQRGALLFLDLDQFKTLNDTLGHDIGDLLL 293

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINL 647
             +T R+   L+  D +AR  G+ F ++L + +      + +  D A  +  S+  P  L
Sbjct: 294 KKVTERLSASLRESDTVARFGGDEFVVLLENLSTYSIEAAAQTRDIATKISLSLNQPYQL 353

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
           L+     T SIG   +   ++T+ E+LK A++AMY +K +GGN +  F     ++     
Sbjct: 354 LDHVYHNTPSIGATLFIGHQLTAEELLKQADIAMYQSKAQGGNTLRFFDQMMQKAIIARV 413

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ +L  A++  +  L Y   +   + + +G E LI W HP+ G IS   F+ +AE++ 
Sbjct: 414 DLQNELRQAIKQQQFQLYYQIQVD-SNSQPLGAEVLISWQHPERGRISPRHFIPLAEDIG 472

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++LE +   + +W++      + + +N+++K L   +  E + A + +   +P
Sbjct: 473 LILPIGQWVLETVCAQLKTWQEDPLTEDLVLAVNVSAKQLHQVDFVEQVIATLQRHSTNP 532

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +R+KL  +ES+++ N       +  L KIGI  +LDDFGT  S L YL  +P D +K + 
Sbjct: 533 ARLKLELTESILLNNITDIIAKMKALNKIGIRFSLDDFGTGYSSLQYLKMLPLDELKIDQ 592

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          AI+ +II +A +++  +IA+ +        L + GC   Q    + P
Sbjct: 593 SFVRNIATDSSDRAIVHTIITIASSLDMNVIAEGVETNAQRLFLQKKGCLRYQGYLFSKP 652

Query: 944 LGFNSILKLLKE 955
           +    +  +LK 
Sbjct: 653 VPIKELEAILKR 664


>gi|114046737|ref|YP_737287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113888179|gb|ABI42230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 878

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 142/561 (25%), Positives = 268/561 (47%), Gaps = 15/561 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      + + V   D   +          I G +   + G   R +    H  
Sbjct: 323 EEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRH-- 380

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           ++  F  + +  +    G+   E   R  D       I I  + +  GD+  ++ + +DI
Sbjct: 381 EKAFFDAMWNHLLE--TGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDI 438

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK+S   +   A+ D LT +PNR   + +L   L  +    N +   + ID+D +K I
Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRL-NAQLATVFIDVDLFKHI 497

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   L+  D+L+R+ G+ F  ++    +    A     +R+
Sbjct: 498 NDSFGHSIGDEMLVELAKRLRCRLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQ 557

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + + +    +  +L+NA+ AMY AK  G N+   +  S
Sbjct: 558 VFEQPFVVSTGDHLRLTASMGVSIYPNDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L   + +G+EAL++W+ P  G IS   
Sbjct: 618 LTKQSIEHLKLQSALYGALEQNALYLMYQPKLDLASRKTIGVEALLRWNDPILGQISPGV 677

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L+++E      + W  +   P   I +N+A + L  +   E ++ 
Sbjct: 678 FIPVAEKIGLIYDIGLWVIETACLQGVRWLAE-GTPFGRIAVNVAGQQLQRSSFVEDVKR 736

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T    + ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 737 ILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 796

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  I+A+ +  +   + LT+  CD 
Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLEIVAEGVETQAQAEFLTQNLCDQ 856

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + PL    +   L +
Sbjct: 857 AQGYLFSRPLLPADVEAFLAK 877



 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 3/117 (2%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +W  +           +     L    + G              + F       +     
Sbjct: 217 IWVKNTEGVYTICNHSVEKAWELPRSEIVGKTDE--DLFGKEIAEIFLNGDRLAIEAGTP 274

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  E       N+  W+     P + ++G +   IG+  +I++ K+ +E  L  A 
Sbjct: 275 IIVAECLDGEKQNKHLWLETLKIPATTADGALAGVIGMTRNISKHKE-VEEQLTLAT 330


>gi|229020569|ref|ZP_04177311.1| Sensory box protein [Bacillus cereus AH1273]
 gi|229026787|ref|ZP_04183119.1| Sensory box protein [Bacillus cereus AH1272]
 gi|228734510|gb|EEL85172.1| Sensory box protein [Bacillus cereus AH1272]
 gi|228740733|gb|EEL90989.1| Sensory box protein [Bacillus cereus AH1273]
          Length = 688

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 151/566 (26%), Positives = 273/566 (48%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 127 EGASALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLLH 184

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D +  +  L S    R   L  E R +  +  ++++ I   P+   N +++   G
Sbjct: 185 FIDPQDHELLKKSLQSTKEGRPQTL--EIRTKEKEGYYYYLHITFIPIF-INKEVVGMFG 241

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L TIL+ +  + N    VM +D+D
Sbjct: 242 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQNNTN-DVAVMFLDLD 300

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    A  A
Sbjct: 301 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIA 360

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E++VT SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 361 EQILTILNKPYFIKDEELSVTPSIGIAMFPEYGTDVTELMKNADMAMYRAKANGKNRFIF 420

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 421 FSKEMSVAQNELHFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIV 480

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 481 SPAQFIPLAEETGFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLIP 539

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 540 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 599

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 600 LTKYPINTLKIAREFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWKFLHEQ 659

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ    + P+    +  LL E+
Sbjct: 660 NCDHIQGFLFSKPVSSQDVWMLLHEK 685


>gi|114321822|ref|YP_743505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228216|gb|ABI58015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 840

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 140/597 (23%), Positives = 267/597 (44%), Gaps = 17/597 (2%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRD 426
            L+G   L+       +     A     + +    +   LA   +  S + +   D    
Sbjct: 242 GLLGFQDLLAGAEQSYLKDLRRALEQRDKALAQSRKHLQLAERVIDSSLEGIVITDAHAR 301

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                P    + G +   + G     L    H     +F   +   +   +G  + E   
Sbjct: 302 IEFVNPAFTHLTGYSLEEVAGRTPAVLSSGRHP---PSFYREMWQAL-QEQGYWRGEIWN 357

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R      +  ++ I  ++N +GD   Y G+  DIT  +++   I   A+ D LT +PNR+
Sbjct: 358 RRKSGALYLELLTITAITNDDGDTTHYAGLFTDITHIRENERQIRQLAYYDPLTRLPNRR 417

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              DRL+  +  +      R  VM ID+D +K++ND LG AVGD++L+ ++ R+ E L+ 
Sbjct: 418 LLDDRLSLAIKHAHRHRQ-RLAVMFIDLDHFKQVNDTLGHAVGDELLLRVSERLREHLRE 476

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D LARL G+ F  +L       +       + ++I+ P  + + +  V  SIG + +  
Sbjct: 477 DDTLARLGGDEFLALLPDLQEVDEAIRVTQRLIEAISQPYTIGDHDFRVGCSIGLSLYPD 536

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSE-LYL 722
              +   +++NA+ AMY +K  G N    +   + +   +++ ++  L    E  E L +
Sbjct: 537 DGESPDALIRNADGAMYRSKTEGRNTYRLYAPEMDTRAKNQLALETALRDTAETGEGLSI 596

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI       +   EAL++W HP  G ++  EF+ +AE   +I  +   ++  +   +
Sbjct: 597 HYQPIFDWRTGALHSAEALLRWHHPTRGAVAPGEFIPLAERSGLIIPLGQAVMRMVCTQL 656

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+      P+ + IN+++K    +EL   ++ ++ +   +P  +    +ES +M + E
Sbjct: 657 KRWQAAGLR-PVPVAINLSAKQFWQDELPGFIRKMLQRCDLNPGLMGFELTESTLMHDIE 715

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---AIL 899
           R    L  LR +G S+ +DDFGT  S L+YL  +P  T+K + S ++     R    AI+
Sbjct: 716 RGLDTLAALRGMGCSVAIDDFGTGYSSLTYLQRLPVTTLKIDRSFVSDLGTCRKGGCAIV 775

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955
            ++  +A+ +E  ++A+ +  E  ++ L R     +Q      P+  ++     L+ 
Sbjct: 776 AAVTGLARELELQVVAEGVETEAQLRALDRYQVALVQGFKTGRPVPADAFSEAYLRA 832


>gi|24372022|ref|NP_716064.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24345889|gb|AAN53509.1|AE015491_1 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1491

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 267/569 (46%), Gaps = 12/569 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +    + A   + + V   D+  +          I+G    S+ G   +    
Sbjct: 925  LRRQLEDEVSLLAQAFENTSEGVLILDVDENIRVANHAAQHIIGSEQKSLVGLSFSQFVQ 984

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +    +D   T +   +  +      E  +   +     + + +  M + N + + Y+ +
Sbjct: 985  M----KDGLSTEVAQLL-GQETSWTGERELVGQNGLVCPVWLNVSVMQSVNQNAIHYVVV 1039

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F +RL   +  +  +   +  ++ +D+D+
Sbjct: 1040 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQNGE-KLALLFLDLDR 1098

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L +      I   A 
Sbjct: 1099 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDINHLAE 1158

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + +
Sbjct: 1159 QLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGNFKYY 1218

Query: 696  --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                ++     + ++ DL  A+E  E  L Y P I +   ++ +G+EALI+W HP  G +
Sbjct: 1219 SSERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPVDGFV 1278

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                F+ +AE   ++  I+ ++L     D   W  Q    P  + +NI++      +  +
Sbjct: 1279 RPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTI-EPFKMSVNISAVHFRQPDFID 1337

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G++ ++  T    S + L  +E V+M   + ++  L +L  +GI + +DDFGT  S L+Y
Sbjct: 1338 GVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSSLAY 1397

Query: 873  LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L     DT+K + S +          AI+ SII +A+N++ T+IA+ +     +++L   
Sbjct: 1398 LRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQLFSR 1457

Query: 931  GCDYIQDSHVASPLGFNSILKLLKERFPL 959
            GC  +Q  + A P+  +   K L+ ++PL
Sbjct: 1458 GCYIVQGYYFAKPMSVSDFEKYLQSQYPL 1486



 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + V      +Q +    +R   ++ GS   +W+W         
Sbjct: 776 LLLVFSIIALGLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQCFYL 835

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DR+      +  +     R + E+R    D 
Sbjct: 836 DNRGY-VLGNHANEIVLTLETLP--VHPLDREKVLIQWNRMLSGDLDRFEAEYRYHRRDG 892

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP++ +    +I R  GI +DIT +++  + +   A
Sbjct: 893 NWGWLRVRGRPVARNKQTQEIERVAGIYSDITLRRQLEDEVSLLA 937


>gi|320105855|ref|YP_004181445.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Terriglobus
           saanensis SP1PR4]
 gi|319924376|gb|ADV81451.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 696

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 256/577 (44%), Gaps = 8/577 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +++ +        ++ + +R  + +   GD V   D+    +        + G     
Sbjct: 122 RALRNAVERKSIEDALYVEKDRALVTLNSIGDAVLCTDLSGKIIFLNLVAEALTGWKRDE 181

Query: 445 MHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPM 502
             G         I    R      L   +   R   +     +         +     P+
Sbjct: 182 ALGKPLAEVFVIIDGETRQPAADPLKKAIEQNRAVSIASNSLLLRRGGGEATIEDSSAPI 241

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + +G ++  + + +D++  +     +   A  D +T +PNR    DR++  +  +    
Sbjct: 242 HDRSGAVIGAVIVFHDVSVARAMTIEMTYAAHHDAVTALPNRLLLNDRISHAITTAQRHK 301

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  VM +D+D +K IND LG AVGD +L ++ +R+   ++  D + R  G+ F ++L 
Sbjct: 302 Q-KFAVMFVDLDHFKSINDSLGHAVGDKLLQAVAKRLQASVRASDTVGRHGGDEFIVLLP 360

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                      A  +  +++ P    +  + +TA+IG + +      ++ +++NA+LAMY
Sbjct: 361 EIEEENDSEISAKKILAALSEPFLFDDVTLQITATIGISIYPRDGKDANSLIQNADLAMY 420

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G + V  F         +R  ++  L  A+E +E  L Y P + L   +I G EA
Sbjct: 421 EAKENGRDQVHFFSDEMKLQAIERQFVESGLRRALEQNEFLLYYQPKVNLKSGKITGAEA 480

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W  P  G +   +F+ +AE   +I  I  ++L  + R    W +  +   + I IN+
Sbjct: 481 LIRWQEPHRGLLLPDQFIRVAENRGLIIPIGRWVLHEVCRQARLW-ELTSGVVLPISINV 539

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +  +L D +  +G++A +++T  +P  I+   +E +++ +   S  +L  L+ +GI + +
Sbjct: 540 SEAELRDTDFIQGVRAALAETGLTPRSIQFELTEGILLKDLRTSIAVLNELKLMGIHMAV 599

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL     + +K + S +       +   ++ +II MAK ++  +IA+ +
Sbjct: 600 DDFGTGYSSLSYLHQFAINVLKIDKSFVHLLTADPRNSTLICAIIAMAKGLKYRVIAEGV 659

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             E     L + GC+  Q    + PL      +L+ +
Sbjct: 660 ETETQRDFLQKQGCEEGQGYLFSKPLPAAEFRELIHK 696


>gi|239787445|emb|CAX83917.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [uncultured bacterium]
          Length = 686

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 282/605 (46%), Gaps = 12/605 (1%)

Query: 358 ITKRLDNDIIQPALVGGLV-LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           IT   D++ +  A   G V  I   I + ++++ +     +     +    S     +G+
Sbjct: 86  ITGLNDDESVDRAFEAGAVDFITKPIHWAILRNRVHYLLTNIEAQRNLSLASRVYDNTGE 145

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            +   D     ++  P    I G  +    G   N L    H  D   F   L   + + 
Sbjct: 146 GIVVTDPYGMILSVNPAFTRITGFEAFEAVGRNMNMLKSGRHGGD---FYLKLWQALSHE 202

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            GR Q EF  R  D         I  + +  G I  YI + +D+T  K+S E +L     
Sbjct: 203 -GRWQGEFYNRRKDGSIFPQWSNISAIHSPTGRIENYISVFSDLTAIKESEENLLFVTGH 261

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR  F +RL   L+ +A        V+++D+D++K +N+ +G  VGD +++ +
Sbjct: 262 DALTGLPNRHLFHERLGFALEEAA-HAGEMVWVLLLDLDRFKVVNETMGHDVGDTLILEV 320

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           +RR+  L      L RL G+ FG+I+ S   S   A  A AM   +  P  L + E  V 
Sbjct: 321 SRRLASLSHVKGSLGRLGGDEFGVIIASAGESQIAAQTAQAMLDVLKTPFMLRDMEYFVG 380

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713
           ASIG   +      +  +++N + A+YHAK RG N+ + +R        + + ++  L +
Sbjct: 381 ASIGIGVYPLDGADAKTLMQNIDAALYHAKERGRNNFQFYRNEMNTRAMNLIRMETSLRV 440

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E  E  L + P + L    + G+EALI+W+ P  G +S  EF+ +AEE  +I  + L+
Sbjct: 441 ALEKDEFELYFQPQMHLSSGRLAGVEALIRWNRPGLGMVSPGEFIPVAEETGLIIPMGLW 500

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            L    +   SW       P  + +N++       +    +   +  +      ++L  +
Sbjct: 501 ALTDACQRAFSWISA-GHAPFRVAVNLSGIQFEQPDFVNLVTQTLKASGLDHQWLELELT 559

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES+ MG+ E + + L  L  +G++L +DDFGT  S L YL   P DT+K + S +    E
Sbjct: 560 ESIAMGDVEETLIKLKSLSSVGVALAIDDFGTGFSSLKYLKRFPIDTLKIDQSFVRNCAE 619

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                AI+R+ I +A ++  ++IA+ +  E  ++ L   GCD IQ    + PL   ++++
Sbjct: 620 DVEDAAIIRAFIGLAHSLGLSVIAEGVETEEQLEFLKSHGCDEIQGYIYSRPLSEAALME 679

Query: 952 LLKER 956
            L+  
Sbjct: 680 FLRSH 684


>gi|304412454|ref|ZP_07394060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307307113|ref|ZP_07586851.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304349096|gb|EFM13508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306910352|gb|EFN40783.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1490

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 265/563 (47%), Gaps = 12/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  +    + A   + + V   D+             I+G+ S  + G        +
Sbjct: 925  QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSADLVGQSFTQFVQM 984

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D   + +   +         E  +  A  Q   + + +  M ++NG +  Y+ + 
Sbjct: 985  N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1039

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D++
Sbjct: 1040 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1098

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + N+  +I   A  
Sbjct: 1099 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDEINHIAER 1158

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            + + I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + + 
Sbjct: 1159 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1218

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I +  +++++G+EALI+W HP  G I 
Sbjct: 1219 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1278

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W  +       + +NI++      +  E 
Sbjct: 1279 PDIFIKVAEACGLIVDIDRWVLRQACVQGAHWAKRYGAT-FKLSVNISAVHFRQPDFIED 1337

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q ++ +T    + + L  +E V+M     ++  L RL+ +GI + +DDFGT  S L+YL
Sbjct: 1338 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1397

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1398 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457

Query: 932  CDYIQDSHVASPLGFNSILKLLK 954
            C  IQ  + A P+      + L+
Sbjct: 1458 CYIIQGYYFAKPMCVADFERYLE 1480



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + +      +  +    +R   ++ GS   +W+W         
Sbjct: 775 LLLLFSIIALSLAWYRQRQINTFKQMNLALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 834

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DR+      DS +     R + E+R +  D 
Sbjct: 835 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 891

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP++ +    +I R  GI +DIT Q++  + +   A
Sbjct: 892 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 936


>gi|218900427|ref|YP_002448838.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218543433|gb|ACK95827.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 909

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 176/870 (20%), Positives = 354/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +   S  F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLSRLFWIILSVGALSYFIGDIVVAYQRLIVKDFYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  +       Y+   N   L +  ++      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLVTFAFAFLYEIIYNRDLLEKLFMLCDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL---FMYLH 274
            T +    +V L Y  +D  FL   +NL    L +        LSS+LI++     +Y +
Sbjct: 161 FTTSYIDIFVQLTYPMVDLLFLLIGINLLFKPLSLLPKKVGALLSSALILYATIDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T +    + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPFYQVTLVLVAIACILHTKEPEKQEQVLLTPKIGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              +L I    +    I    +       + + +++      L+  +        Q  L 
Sbjct: 281 ITLILFILVEYVFGPIIVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIKLR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+      I
Sbjct: 401 --YYSLIYEEDLEEMINSFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKE-KI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   L   +  +         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQHLEQAIARAKISKKP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIENYKKKPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 575 VQKMADIIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL +A+ N E +LVY P I     +I+G EALI+W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPIALVNKEFHLVYQPQIDTTTNKIIGAEALIRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS  EF+ I EE   +  +  ++L+     +  W        + I +N+++K+   
Sbjct: 695 LLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQLKIWH-ILGYQNLKISVNLSAKEFRQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           ++L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  
Sbjct: 754 DQLIENISQILNNVSVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  N  +K L++
Sbjct: 874 FLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 903


>gi|117919610|ref|YP_868802.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117611942|gb|ABK47396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 878

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 143/561 (25%), Positives = 268/561 (47%), Gaps = 15/561 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      + + V   D   +          I G +   + G   R +    H  
Sbjct: 323 EEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRH-- 380

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           ++  F  + +  +    G+   E   R  D       I I  + +  GD+  ++ + +DI
Sbjct: 381 EKAFFDAMWNHLLE--TGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDI 438

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK+S   +   A+ D LT +PNR   + +L   L  +    N +   + ID+D +K I
Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRL-NAQLATVFIDVDLFKHI 497

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   L+  D+L+R+ G+ F  ++    +    A     +R+
Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQ 557

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TAS+G + +      +  +L+NA+ AMY AK  G N+   +  S
Sbjct: 558 VFEQPFVVSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTES 617

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + +G+EAL++W+ P  G IS   
Sbjct: 618 LTKQSFEHLKLQSALYGALEQNALYLMYQPKLDLVSRKTIGVEALLRWNDPILGQISPGV 677

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I  I L++LE      + W  +   P   I +N+A + L  +   E ++ 
Sbjct: 678 FIPVAEKIGLIYDIGLWVLETACLQGVRWLTE-GKPFGRIAVNVAGQQLQRSSFVEDVKR 736

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T    + ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 737 ILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKL 796

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  I+A+ +  +   + LT+  CD 
Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLEIVAEGVETQAQAEFLTQNLCDQ 856

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + PL    +   L +
Sbjct: 857 AQGYLFSRPLLPADVEAFLAK 877


>gi|153002435|ref|YP_001368116.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367053|gb|ABS10053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1497

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 265/563 (47%), Gaps = 12/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  +    + A   + + V   D+             I+G+ S  + G        +
Sbjct: 932  QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSTDLVGQSFTQFVQM 991

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D   + +   +         E  +  A  Q   + + +  M ++NG +  Y+ + 
Sbjct: 992  N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1046

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D++
Sbjct: 1047 SDITERKQTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1105

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + N+   I   A  
Sbjct: 1106 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIAER 1165

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            + + I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + + 
Sbjct: 1166 LLEQIVAPFKLYGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1225

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I +  +++++G+EALI+W HP  G I 
Sbjct: 1226 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1285

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W  +       + +NI++      +  E 
Sbjct: 1286 PDIFIKVAEACGLIVDIDRWVLRQACVQGAHWAKRYGST-FKLSVNISAVHFRQPDFIED 1344

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q+++ +T    + + L  +E V+M     ++  L RL+ +GI + +DDFGT  S L+YL
Sbjct: 1345 IQSILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1404

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1405 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1464

Query: 932  CDYIQDSHVASPLGFNSILKLLK 954
            C  IQ  + A P+      + L+
Sbjct: 1465 CYIIQGYYFAKPMCVADFERYLE 1487



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + +      +Q +    +R   ++ GS   +W+W         
Sbjct: 782 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 841

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DR+      DS +     R + E+R +  D 
Sbjct: 842 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 898

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP++ +    +I R  GI +DIT Q++  + +   A
Sbjct: 899 NWGWLRVRGRPVARNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 943


>gi|119493186|ref|ZP_01624061.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
 gi|119452751|gb|EAW33928.1| hypothetical protein L8106_15704 [Lyngbya sp. PCC 8106]
          Length = 1653

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 147/575 (25%), Positives = 271/575 (47%), Gaps = 17/575 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTT--TPDIATILGLASGSMHG 447
                    +  + +       G+   ++  D+    D       P    +    +  + G
Sbjct: 1079 ERQQAEAQLRENEQFLQSIYQGAAVSIFVVDVLESGDFRYVGLNPIHEQLTQFTTAQLKG 1138

Query: 448  PIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                    I             +D     +    +     +         + ++ P+ + 
Sbjct: 1139 KTP---EQILPASYAKVVRQHYIDCVTAKKTISYEEVMPFQE---SISHWLTQLTPICDR 1192

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            N  I R +G + +ITE+K + E +  NA+ D+LT +PNR  F++RL   +    T     
Sbjct: 1193 NNHIYRIVGTSINITERKLAEEKLRYNAYHDSLTSLPNRPFFMERLQEAIQQVKTQKGCL 1252

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +V+  D+D +K IND LG A+GD +L++LT R+   L+  DILAR  G+ F I+L    
Sbjct: 1253 FSVLFFDLDDFKYINDSLGHAIGDQLLIALTDRLRSCLRKTDILARFGGDEFTILLGGIQ 1312

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               ++   A  +++ + +P  L   ++   ASIG A  T+      E+L++A++AMY AK
Sbjct: 1313 QIDQVIKVAQNIQQELNLPFVLGSHQVFTNASIGIALVTADYQQPEEILRDADIAMYSAK 1372

Query: 686  HRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G      F          R+ ++ DL  A+E  +  + Y PI+ L  + I G EALI+
Sbjct: 1373 AQGQGKSAIFNRQMHLKMLERLQLETDLRQAIEQKQFQVYYQPIVCLKTDNITGFEALIR 1432

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802
            W HP    +S ++F+ I E   +I  I  ++L +    + +W +Q    P + I +N++ 
Sbjct: 1433 WKHPNGNFVSPAKFIPITEITGLIVEIGQWVLHQACLQMKTWHEQFPNFPNLTISVNLSG 1492

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            + L + ++ + +  ++ +T      +KL  +ES++M NP   + LL +++   I L+LDD
Sbjct: 1493 RQLREPDVVDKIDDILQETGLKRDCLKLEITESMLMDNPSAVKSLLKQIKSRQIKLSLDD 1552

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S LSYL   P DT+K + + +  +  +    AI ++I+ +A+N+   +IA+ I  
Sbjct: 1553 FGTGYSSLSYLHSFPIDTLKIDRAFVVHANSEFKNKAITQAIVTLAQNLGMEVIAEGIET 1612

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               +++L ++ C++ Q    + PL       LL+ 
Sbjct: 1613 TDQLEQLKQLKCEFGQGYLFSKPLTQADAETLLQS 1647



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 13/148 (8%)

Query: 387 IQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDI---VRDRVTTTPDIATILGL 440
           +Q +      +       ER  L   A+  + + +   D        +     I  I G 
Sbjct: 583 LQAIANILATAVEKVESTERLRLLERAINFTSNGILITDPNQPDNPIIYANSAIERITGF 642

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIR 498
           +   M G    +         +  +  ++       +        +   AD    W+ + 
Sbjct: 643 SPSEMIGYNPRFFQQ-----NNRDQAGINELRQAVQQAKECNVILQNYRADGTPIWIELY 697

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL 526
           I P+ N  G +  +IG+ NDITE++++ 
Sbjct: 698 ISPVFNDAGLLTHFIGVQNDITERRQTE 725



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 32/207 (15%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI------QHVLATGYFSQGIFSDG 404
                     +  N  +   L+GG + I +L+G +        +        +Q    + 
Sbjct: 244 LQLASNLTLFKTQNLPLSEILLGGGMTISLLVGISTFLANLYREQAKKLHKINQDFLEEI 303

Query: 405 ERQSLAVLG--------------SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
             +  A+                S D++             P   T LG     +     
Sbjct: 304 HLREAALHQYQKVEQERDCLFLLSPDLLCIAGFDSYFKRINPCFETTLGYTQAQLLAQP- 362

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             + ++H  DR   +      +  +   +Q+E R R  +  + W+  +  P      +  
Sbjct: 363 -LITWVHPEDRAETQIKWQELLTGK--SIQFENRYRCQEGSYIWLSWKATPSL----ETS 415

Query: 511 RYIGIANDITEQKK----SLEGILCNA 533
               +A +ITE+K+        +   A
Sbjct: 416 LVYAVARNITERKQVETLLRSRVHQQA 442



 Score = 58.0 bits (139), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 41/148 (27%), Gaps = 8/148 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++     V   +         + +   R    +  + D +   D              I 
Sbjct: 707 LLTHFIGVQNDITERRQTEVALQASEARLRGLLDIAQDGIISIDQQDRIQLFNQGAEQIF 766

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +S ++ G     L  +        +      +     +   E   R  +         
Sbjct: 767 GYSSETVIGQP---LDLLIPQ--QYLQAYHSENIDQSLNK-PLEIIGRRQNGTEFPAEAS 820

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL 526
           +  +  + G  + +  I  DI+ +K++ 
Sbjct: 821 VSKLELAEG--IFFTIILRDISNRKQAE 846



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 54/203 (26%), Gaps = 8/203 (3%)

Query: 334  YERAVLLIPAWILIFIWFI--GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
               +  LI  W+      +     + I    +  I+    +  ++          +++V 
Sbjct: 888  NRSSSELIGYWLGSLCGKVEQATEVTIVHSPERLIMAEMQMVNIIWEGKPATLASLRNVT 947

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV----RDRVTTTPDIATILGLASGSMHG 447
                  Q +          +      V+  +                  + GL S  + G
Sbjct: 948  ERYEAMQKVRQTRNFLQTLIDHLPVAVFVKEGKPKHFGQFTFWNKTSERLFGLKSEQVIG 1007

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               +                    + +       E  V + ++    +     P+ +   
Sbjct: 1008 KTVH--ELFPPEQAKRMIQQDQEALNWGLMLDISEESVNSLNSGRRILHTVKVPLYDDEM 1065

Query: 508  DILRYIGIANDITEQKKSLEGIL 530
            +    + I  DITE++++   + 
Sbjct: 1066 EPEHLLCICEDITERQQAEAQLR 1088


>gi|89094950|ref|ZP_01167881.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
 gi|89080816|gb|EAR60057.1| PAS:GGDEF protein [Oceanospirillum sp. MED92]
          Length = 892

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 144/563 (25%), Positives = 258/563 (45%), Gaps = 21/563 (3%)

Query: 401 FSDGER-QSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456
               ER   +A     S + +   D     +        + G  +    G    +L    
Sbjct: 324 RKRHERELHIAATAFDSQEGMLITDAEHRILRVNNAFTRVTGYEAEEAIGNTPAFLQSGK 383

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D   F   +   +  +    Q E   +    + +   + I  +  S G+I  Y+G  
Sbjct: 384 HSED---FYQTMMESLS-KNNYWQGEVWNQRKSGEIYPQHLTITAVQTSAGEITNYVGAF 439

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT++K+    I   AF D+LTG+PNR+S  +RL + L  S         V  ID+D +
Sbjct: 440 TDITQRKQDEADIHQLAFYDSLTGLPNRRSLQERLDSALS-SCRHTRQLGAVFFIDLDNF 498

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIA 631
           K +ND  G   GD +LV +  R+   ++  D++ARL G+ F +IL +          ++ 
Sbjct: 499 KNLNDTAGHDQGDKLLVEVANRLNSCVRNADMVARLGGDEFIVILENLGVDESNVLAQVK 558

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D    +  +I  P+ +  +    T SIG A ++    +  E++K +++AMY AK  G N 
Sbjct: 559 DIVAKVILTIQAPLTIGTQAYHPTCSIGIALFSEKDFS-DEVMKRSDMAMYQAKSSGKNT 617

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F             +  DL  A+ N +L L Y P  R     ++G EAL++W HP  
Sbjct: 618 YRFFDPVAEEALCSLARMDADLRFALSNQQLELHYQPQYRCQT--LIGAEALLRWKHPDR 675

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S +EF+ +AE+  +I  I  +++ +  + +  W+++     +FI +N++++    + 
Sbjct: 676 GMVSPAEFIPLAEDTGLILPIGEWVIRQACKQLQQWQERPETAELFIAVNVSARQFCQDN 735

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E ++ L++    S  ++KL  +ES+V+ + E +   +  LR  GI   LDDFGT  S 
Sbjct: 736 FVESVRQLLNTYGVSAEKLKLELTESLVLMDVEDTIQKMQALRSYGIRFALDDFGTGYSS 795

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P D +K + S +      +    I+++II M +N+   ++A+ +  +  +  L
Sbjct: 796 LSHLKRLPLDQIKIDRSFIRDVPEDQDDSEIVQAIIAMGQNLGLNVLAEGVETDEQLAFL 855

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
           T + C  IQ   +  P   +   
Sbjct: 856 TELDCLDIQGFLLGRPSSIDKFE 878



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/345 (11%), Positives = 99/345 (28%), Gaps = 24/345 (6%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271
           ++   +L     +A ++   +  D    ++        +        IA++   +     
Sbjct: 1   MSGDILLPLVNNVALLLAMGVLFDAFAFNEAKPSLPKRITSGLILGCIAIAIMSMPLSIT 60

Query: 272 ---YLHWNRWHAKVGYITFSGIACIAILFCMSFY-YPMVTASIARITLASIVLYYTYFII 327
               +        V  + F  I  +      + +             L  +         
Sbjct: 61  SGVIIDTRSILLSVSGLFFGVIPTVIAASMAAVFRIMEGGQGTIAGLLIIMTSAGIGIYC 120

Query: 328 YHG--------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
           Y          +KGY+  ++ +   + + +  + L  +    L ++I  P +V   +  V
Sbjct: 121 YQWKQRLGHEVIKGYQLYLMGLTVHVSMMVCLLVLPYSTLGLLLSEITLPIIVIFPLATV 180

Query: 380 ILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +L G    Q        A     +       R         D++++ DI    +      
Sbjct: 181 LLGGLLSQQISRKKAEAALRESERTSNHARHRLEATFSAIPDLLFEMDIEGRYLACHASD 240

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFH 493
              L      + G   +   +I +++       +    +       Q   +V        
Sbjct: 241 PDDLVAKPEELIGK--SVFDFIPLDEAQIIVEAIREADLKGISKGRQVTLQVGR---GLR 295

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-QDN 537
              + +    +       +I ++ DITE+K+    +   A   D+
Sbjct: 296 EFELSVSRKHDDESSEHHFIVLSRDITERKRHERELHIAATAFDS 340


>gi|209546934|ref|YP_002278852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538178|gb|ACI58112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 730

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 140/582 (24%), Positives = 260/582 (44%), Gaps = 8/582 (1%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
                     + +         I S   +    +    D++W  D+    +        +
Sbjct: 139 AAATTLLAFSRDITERKQAEDAINSVRTQLLSVLQTMPDMIWVKDMNGVYLLCNHTFERL 198

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMI 496
            G+A   + G     L    I     F+    + +      L  E  V +  + Q   + 
Sbjct: 199 TGMAEAEVVGKTD--LELFDIERARFFQQSDKAAIKAGECILSDEEWVVSQENGQTILLE 256

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            R  P+ ++ G+++  +G+A D+TE   S + I   AF D LT +PNR  F DRL  ++ 
Sbjct: 257 TRKVPVIDAAGEVVGVLGVARDVTELNVSRQKIHQMAFYDPLTSLPNRSLFNDRLRQMIT 316

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            + +    R  +M+IDID +K +ND +G  VGDD+L     R+   ++  D +ARL G+ 
Sbjct: 317 SAGSRGQ-RAGLMLIDIDHFKVVNDTMGHPVGDDLLCQAAARLNASVRDHDTVARLGGDE 375

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L   +    +   A  +         L  +E+ V+ S+G A +      +++++K 
Sbjct: 376 FAILLPDISQGDDLGRIANNILDKFRERFLLDGQEVFVSCSVGIALYPDDSADANDLVKY 435

Query: 677 AELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N    +         +R+ ++ DL  A+E  EL L Y P + L    
Sbjct: 436 ADSAMYLAKRSGRNSFRFYSKDLTASAEERMRLESDLRRAIERGELELHYQPKVLLDSGA 495

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG EAL++W HP+ G I    F+ +AE+  +I  +  ++L    +        +  P  
Sbjct: 496 MVGCEALLRWRHPEMGMIPPVRFIPVAEDTGLIVELGRWVLHEACQTAAELNADSRSPH- 554

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + IN++ K      L + +  +I +T      +++  +ES+++   + +   L  LR +
Sbjct: 555 KVAINLSVKQFQSAGLVKSIAQIIDETGCRAEWVEIEITESLLLDQKDETLQALSELRSM 614

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII 914
           G S+ +DDFGT  S L+YL   P DT+K + S +  +  +   ++++I+ +A+ +  +++
Sbjct: 615 GFSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSTDRRNEELVKAILSIARCLGQSVV 674

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
           A+ +        L   GC   Q    +  +    I+   L+ 
Sbjct: 675 AEGVETAEQAAFLVANGCGTAQGFLYSKAVPKADIIALWLRS 716



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 42/140 (30%), Gaps = 4/140 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +       + +    E     +    D++++ D     +        +L      + G 
Sbjct: 23  DIAEHKQAERELKKALEFAEGIIAAIPDVLFEVDEDGRYLQVWTRNPELLAQQKEMLLGR 82

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG- 507
             N    +  +        L           +   R+   + +  W  + I    +++  
Sbjct: 83  TVN--DVLAPDQAAIAMEALRDAGKEGVAYGRC-IRISLPNGETRWFELSIAKRPSADPA 139

Query: 508 DILRYIGIANDITEQKKSLE 527
                +  + DITE+K++ +
Sbjct: 140 AATTLLAFSRDITERKQAED 159


>gi|332304717|ref|YP_004432568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172046|gb|AEE21300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 960

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 163/968 (16%), Positives = 352/968 (36%), Gaps = 38/968 (3%)

Query: 16  LILVLFLLWMVSPSF-AIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           ++L++  L     +   + P+N+S+S   ++L   ++  V      Q+    ++      
Sbjct: 1   MLLIVMQLSQAVSAQVELTPVNVSNSAAPINLMEHSQWLV-ADNRVQLSDIQELTTWRSE 59

Query: 75  IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI-ISVTPS 133
                 +      W    L + S S     I + + R+     +  D   R I      +
Sbjct: 60  FSPQPLNANQS-LWGKVTLTSES-SNKPFFISIDNPRIDALDIYILDERDRIINSYRMGT 117

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSFTLY 191
                +        V  + I         +++    P +    L       D     ++ 
Sbjct: 118 SRPLDNGPFAHRLFVIPLDIPYAQPRNIYVKVRDNGPLVFAFTLQTETALLDKEQRNSIV 177

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
             +I G  +++ ++  + Y + RS      F  +     Y+ + F     +V+  SG   
Sbjct: 178 FSLISGALAMMVLYFLVTYTLLRS---PVRFWFSVASTAYLLL-FLNSQGVVSYLSGYNA 233

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
                S I  +  L     +     R               I+               ++
Sbjct: 234 YIDNISTILCALLLFSLAKITFTIFRPLPTYYRYFLYATGWISAASAFVLNSYHQILLVS 293

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-----NDI 366
                ++V      I Y     +    +      LI +          K L      +  
Sbjct: 294 GAAALAVVTIAVLAIFYRYKGHHISNRMFALGLTLIALTTAAHTGLYLKWLAFPEQLSLT 353

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +   ++ G+VLI + I               Q    D ++       + +  +   +  +
Sbjct: 354 LSALIIIGIVLIAVAIAAHEKVIAFRHYTEQQDAIRDLQQFVDMFEDAPEGRFITSLDGE 413

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +     +A I G    +      + +  ++    +    +L   +   +  L  E + +
Sbjct: 414 LLRANRAMAKIFGYEDVAHMKAQLDSVSTLYAQSHER--ELLLGELHKNQSTLGKEIKGQ 471

Query: 487 AADNQFHWMIIRIRPMSNSNGDILR--------YIGIANDITEQKKSLEGILCNAFQDNL 538
              NQ  W+++  +   +S G              G   DI++QK + + I   A  D L
Sbjct: 472 TRQNQPLWLLVSAQLSDSSKGLAKGDGTSSDKIIYGSILDISKQKAADQNIEYMASHDTL 531

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG   RQ F  RL   ++ +  + +   T++ ++ID++K IND  G   GD +L   ++ 
Sbjct: 532 TGFYQRQEFEKRLHAAINQAKQEQD-ELTLLHVNIDQFKAINDTYGHKAGDAILRQFSQL 590

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + +++   +++ RL G+ FGI+L   N           +        +  ER +++  SI
Sbjct: 591 MLKIVTVDNMIGRLGGDEFGILLTGSNAQNSFMLANKLLNTVQNYDFSWEERRLSIGISI 650

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCLA 714
           G  SW     +S ++L  A+ A Y AK  G N + ++  +  +      ++     +  A
Sbjct: 651 GQVSWNEKVTSSEQLLSMADSACYMAKTLGRNRLHTYSSTDKQIAKYESQLSWLPRIQHA 710

Query: 715 VENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           + ++   L     + +    +    E L++        +  +EF+  AE   +   I+ +
Sbjct: 711 LTHNGFELHMQTYMPMTSIAQGHHYEILLRLVDEHDQRVLPNEFLPAAERYNLSAKIDRW 770

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++     +           +   IN++ + L + +L   + +   K     S+I    +
Sbjct: 771 VIDTYFTWLNQNPQHKEDL-VRCNINLSGQSLGNQDLKLFILSAFEKYHVPHSKICFEIT 829

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
           ES+ +   + +   +   + +G +  LDDFG+  S  +YL  +P D VK +G  +     
Sbjct: 830 ESMAILKLDETIEFINTFKALGCTFALDDFGSGFSSYNYLKNLPVDQVKIDGEFVKSILI 889

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL- 950
               +A++ SI  +A  ++   IA+ +  +  + EL ++G D++Q   V  P   +++  
Sbjct: 890 DSVDMAMVTSIKDIASAMKIQTIAEYVESKEIMVELGKIGVDFVQGFGVNKPAPLHTLKD 949

Query: 951 --KLLKER 956
             +LLK +
Sbjct: 950 DDQLLKSK 957


>gi|332528689|ref|ZP_08404666.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
 gi|332041755|gb|EGI78104.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
          Length = 968

 Score =  532 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 144/608 (23%), Positives = 259/608 (42%), Gaps = 35/608 (5%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
             I      +          +    L+ +  +  +       Q +     R       S 
Sbjct: 371 FRIIGEDGWERWLLGHAINRLEGDHLVAYGSVSDITDRKLAEQRLQDSEARFRSLTDLSS 430

Query: 416 DIVWDWDIVRDRVTT-----TPDI---ATILG---LASGSMHGPIRNWLPYIHINDRDNF 464
           D  W+ D     +          +   A ILG      G+++    +W            
Sbjct: 431 DWYWETDEQLRFIHFVGYQQNKILRSEAEILGKTRWEIGALNMSEEDW------------ 478

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +    +  R+     E     A  Q +W+ I   P+ ++      Y GI  DI+++K+
Sbjct: 479 -AVHRQVLESRQPFRDLELLRMGAHRQQYWVSISGAPIFDARQRFRGYRGIGRDISDRKR 537

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +       AF D LTG+PNR+  LDRL       A        +  +D+D +K +ND LG
Sbjct: 538 AEGETQRLAFYDTLTGLPNRRLLLDRLAQAQAACARTKR-HGALFFLDLDNFKDLNDTLG 596

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRK 639
             VGD +L  + +R+   L+  D  ARL G+ F ++L+  +                + K
Sbjct: 597 HDVGDLLLKQVAQRLLSCLRESDTAARLGGDEFVVMLLELDEDENEAAAHAERVGEKILK 656

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P  L  RE   + SIG   ++       E+LK A+LAMY AK  G N +  F    
Sbjct: 657 RLNAPYELAGREHNSSPSIGLTVFSGGAQGVDELLKRADLAMYQAKAAGRNTLRFFDPQM 716

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +      +  D+  AV+N EL L Y P++      + G EAL++W+HP+ G ++   F
Sbjct: 717 QAAVLARAALDADMRQAVQNQELLLHYQPVVDAAGG-VRGYEALLRWNHPRRGVLAPGSF 775

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L      +++W    +   + + +N++++     +  + + A+
Sbjct: 776 IGLAEQSGLILPIGQWVLRAACHQLVTWSRGLDTQGLSLAVNVSARQFRQRDFVDQVLAV 835

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +T  +P R++L  +ES+++   E +   +  LR  G+  +LDDFGT  S L+YL  +P
Sbjct: 836 IDETGVNPQRLRLELTESLLISEVEDAIRKMAELRARGVRFSLDDFGTGYSSLNYLKRLP 895

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++   +      I+R+I+ +A+++    +A+ +  E     L   GC   
Sbjct: 896 LDALKIDRSFVSDVLTDPNDAVIVRTILALAQSMGLQTVAEGVETEGQRDFLRDNGCTLF 955

Query: 936 QDSHVASP 943
           Q      P
Sbjct: 956 QGYLFGRP 963



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 8/168 (4%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDI 434
              + F VI  V A    +  +                +++ ++   D        +P +
Sbjct: 264 GSFLDFGVILDVTAETEAALVLREQLAFIEKITSHVPLMLFLYERRGDGTEVFPFLSPGV 323

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             + G+ +             +H  DRD  R  +D+   +  G   +EFR+   D    W
Sbjct: 324 RKLFGVEAEEARRDASLLFNRLHPEDRDGVRHSMDAA-HFDGGIWSHEFRIIGEDGWERW 382

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC-NAFQDNLTGI 541
           ++     ++   GD L   G  +DIT++K + + +    A   +LT +
Sbjct: 383 LL--GHAINRLEGDHLVAYGSVSDITDRKLAEQRLQDSEARFRSLTDL 428



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 9/180 (5%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
               ++     +D     L    +  V   G T    V+A    +  + +  +  +L   
Sbjct: 118 INASSLDGLRASDGRHVLLSMEDITAVRDTGGTSPSGVVAQNLANDRLAAQLDLYALTEE 177

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            +    W  D     V  +P +  + G  + +M   +      IH  D   +       +
Sbjct: 178 LARVGHWSSD--GKSVYFSPGLQKMSGAQTPAML-TVEEARRRIHPEDLQIYLEA-REAM 233

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R     +E+R+   +    W   RI    NS+G  L + G+  D+T + ++   +   
Sbjct: 234 DGR----VFEYRIMGPEGGVSWRRARIHRHCNSDGSFLDF-GVILDVTAETEAALVLREQ 288


>gi|90020307|ref|YP_526134.1| triosephosphate isomerase [Saccharophagus degradans 2-40]
 gi|89949907|gb|ABD79922.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 855

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 137/573 (23%), Positives = 255/573 (44%), Gaps = 8/573 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                ++ A       +    ER  LA+ G+   +WDW I    +     +  + G+   
Sbjct: 275 LISFVNITAETEAHTALEKASERLRLALDGASIGIWDWYISDAEMIWDDQMYRLYGMEPR 334

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W    H +D       L   +  ++  +  EFRV   D     +    R + 
Sbjct: 335 QYISVREAWEHVAHPDDNQRVLDELGELLKTKKDTIS-EFRVLLPDKSIRHLRAYARAVL 393

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G + R +G+  D+T++ ++ E +   AF D LT +PNR +F  +L   + L+     
Sbjct: 394 DEDGLVQRVVGMNWDVTKEVEAEERLAHIAFTDELTSLPNRLAFSKKLKNTMKLAEKYHG 453

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++++D+D +K IND  G  VGD ++  +  R+ E+L   + LAR+ G+ F +IL +
Sbjct: 454 -KVAMLIVDLDHFKDINDSYGHPVGDSLICEVVTRLKEVLVGDEYLARIGGDEFALILDN 512

Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +      ++  ++K +A PI L     +    S+G A +      +  ++K A+LAM+
Sbjct: 513 VRSHDAALHYSRRIQKIMAEPIYLMEGPVVNARVSMGVALFPDDGEDAVALIKAADLAMH 572

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N V  ++     S      ++E+L  A+ + EL L Y PII L  E+IVG EA
Sbjct: 573 QAKKSGRNTVLPYKQEYSSSLEKKIFLEEELRSAIRDEELMLYYQPIIDLSTEKIVGCEA 632

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W       +S  +F+ +AEE  +I  +  ++     + +  W+        +I +N+
Sbjct: 633 LLRWIDRAGKFVSPVDFIPVAEESGLIYELGNWINATAFKQLKLWQTLHTDMK-YISVNV 691

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L + +  + +Q L+      P  I+L  +E   +     ++  L  L ++G  L +
Sbjct: 692 SPHQLQNADFVKDIQRLLDIHNVDPRHIQLEITEGTFLQESLNTQSQLRILGEMGFRLAI 751

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL     D +K + S +           I+++II M  ++    + + +
Sbjct: 752 DDFGTGYSSLAYLKRFAVDVIKIDRSFVMDLEDDPADRDIVKAIIAMTTSLGFDTLVEGV 811

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                   +  +GC Y Q      P   +   +
Sbjct: 812 ETREQSLIVGALGCGYGQGYLYGKPTFADDYAE 844


>gi|254459357|ref|ZP_05072778.1| ggdef domain protein [Campylobacterales bacterium GD 1]
 gi|207083970|gb|EDZ61261.1| ggdef domain protein [Campylobacterales bacterium GD 1]
          Length = 744

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/584 (23%), Positives = 264/584 (45%), Gaps = 18/584 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +          Q +     +Q   +    D V   D+     +       +L     
Sbjct: 166 AVRMIGTHRDITNIQEMQLKYSQQVQIIEQIHDSVISTDLNGYITSWNKGSQILLEYTEE 225

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M     +        D    +      + +  G    + R+        ++ + +  + 
Sbjct: 226 EMLTKHVS--SLFLEEDHKALQEGTQELIKH--GEYHADKRLVKKSGDIIFVSLSLSILK 281

Query: 504 NSNGDILRYIGIANDITEQKKSLEGI-------LCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +  G+    +G   DIT++K++ E +          A  D LT +PNR  F +RL   ++
Sbjct: 282 DEKGNPTALVGYCQDITKRKEAEEKLYEQKNILHYQAHHDELTQLPNRTFFNERLEQAIE 341

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +  +      +  ID+D +K+IND LG  VGD VL     R+   ++  D L+RL G+ 
Sbjct: 342 KAKRN-KTLIALFYIDLDHFKQINDSLGHEVGDIVLKITAERLKNKIRKEDTLSRLGGDE 400

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +I+   N +  ++  A  + + +  PI +    + +++SIG + +      +  +LK 
Sbjct: 401 FTLIIEELNIAKDVSLLAQKIIEDLEKPIYIDTHTLYISSSIGISIYPDDDTDAKNLLKY 460

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N+ + +         + V ++  L  A++N E  + Y P +    + 
Sbjct: 461 ADSAMYKAKEEGRNNFQFYSSEMTELAFEHVAMEASLRQALQNEEFVVYYQPQMDGRTDR 520

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG+EAL++W+HP  G +   +F+ IAE+  +I  I+ ++++      ++W      P +
Sbjct: 521 LVGMEALVRWNHPTLGLVQPYKFIPIAEKNGLIVQIDQWVMKSAMTQFVAWYKDGLNPGV 580

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+A K L   +  + M  L+  T   P  I+L  +ES +M NP+ +  +L ++ ++
Sbjct: 581 -LAMNLAVKQLQKKDFIDTMSNLLKSTQCKPEWIELEVTESQIMTNPQEAIKILKQISEM 639

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           GI L +DDFGT  S LSYL  +P D +K + + +      E+ + I +S+I ++K++   
Sbjct: 640 GIELAVDDFGTGYSSLSYLKRLPIDKLKIDRTFIQDLPDDEEDVGITKSVIALSKSLNLK 699

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955
           +IA+ +  +     L   GC  IQ    + P+  N +  + LK 
Sbjct: 700 VIAEGVETDEQKNFLVENGCQNIQGYLYSKPITANEMKERFLKN 743



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER  LA+LGS D +WDW+I  D +  +P    +LG     +   + +W   +H  D  +
Sbjct: 61  HERIELALLGSNDGLWDWNITDDSIYFSPRWKEMLGFKDDELPNEMPSWQDRVHPEDLQS 120

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               ++  +       +   R+R  +  + W + R +   + NG  +R IG   DIT  +
Sbjct: 121 ALDEIEKNINGETDYYENIHRIRHKNGDWIWTLDRGKVQLDENGKAVRMIGTHRDITNIQ 180

Query: 524 KSLEGILCNAF-----QDNL--TGI 541
           +                D++  T +
Sbjct: 181 EMQLKYSQQVQIIEQIHDSVISTDL 205


>gi|307822245|ref|ZP_07652477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736811|gb|EFO07656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 742

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 247/562 (43%), Gaps = 10/562 (1%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             + +  +   L   + +   D     ++       + G  +        + L     N 
Sbjct: 182 VQELQLAATIYLALDEAIMVADANNQIISVNEAFTRLTGYTAAEAINQSTSLLKSGRQN- 240

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            + F   +   +    G  Q E      +       + I  + +  G+++  + + +DIT
Sbjct: 241 -EAFYQEMWHLL-NTTGHWQGEIWNLRKNGGEFIGWLSISTIYSDTGEVVHRVAMFSDIT 298

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K++ + I   A  D LTG+PNR+ F DRL   +  +   +  +  V+ +D+D++K IN
Sbjct: 299 DKKQTEDIIRKQADFDLLTGLPNRRLFYDRLQQAIKKAKR-EGQKLAVLFLDLDQFKDIN 357

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  + +R+   ++  D LAR  G+ F IIL + +    I   A  +  S
Sbjct: 358 DTLGHEIGDRLLNEVAQRLDACIRDSDTLARPGGDEFIIILDNLDEFNSIERVANCILGS 417

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A+P  L      V+ SIG   +    +   E++K A+ AMY AK +GG     F  S  
Sbjct: 418 MALPFQLEHESCYVSLSIGITLFPDDAVVVDELVKKADQAMYAAKRQGGKRFCYFAPSMQ 477

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ I  DL  A+ N + ++ Y PI+ L   +I   EALI+W HP  G IS +EF+
Sbjct: 478 AAADSRLRITNDLRNALANQQFWVAYQPIVDLATGDIHKAEALIRWQHPTQGLISPAEFI 537

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817
            IAE+  MI  I  ++  + A+ ++ WR + + P   I +N +       ++   G    
Sbjct: 538 PIAEDTGMIVEIGEWVFHQAAKQVLKWRSK-HHPHFQISVNKSPVQFESQHDNINGWFEH 596

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +       + I +  +E ++M         L   R  G+ ++LDDFGT  S +SYL    
Sbjct: 597 LQHLELPGASITVEITEGLLMDASSIVSEKLLIYRDTGMQVSLDDFGTGYSSMSYLKKFD 656

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +   T       +  ++I MA  +   +IA+ I        L + GCDY 
Sbjct: 657 IDYLKIDQSFVRNVTTDSTDRTLCETMIMMAHKLGMKVIAEGIETAEQRDFLMQAGCDYG 716

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q    + P+       L   R 
Sbjct: 717 QGYLFSRPVPAEEFELLFHPRN 738



 Score = 41.9 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 8/160 (5%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LV  +++    ++    A            ER +     +    +               
Sbjct: 39  LVHELLVHQVELVMQNEALQEARATTEIALERYTELFDFAPTAYFTLAADGGIHQANFRG 98

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG+  G +    + ++ ++    R  F+  L++       + Q E  ++       W
Sbjct: 99  ELLLGIERGKIV--RKQFINHVSGEYRQVFKRFLETVFTGEGAQ-QCEITLQ-VGGIPIW 154

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           + I        +      +    DI+EQK++++ +   A 
Sbjct: 155 VSIEATV----DASRKTCLASMIDISEQKRNVQELQLAAT 190


>gi|78776728|ref|YP_393043.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497268|gb|ABB43808.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 707

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 146/545 (26%), Positives = 263/545 (48%), Gaps = 10/545 (1%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S D +   D   + V+       + G +   + G     L      D + ++ +  S + 
Sbjct: 169 SSDGIVITDKNNNIVSVNKSFEKLTGYSKEEIIGKNPKLLSS-GWGDEEFYKNMWSSLLS 227

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 + E   R  D   + +   I  + + N DI+ YIG++ DITE K   E I   A
Sbjct: 228 N--DLWRDELWDRKKDGSLYAIEQTIICVRDKNQDIVNYIGMSRDITEAKNKEEKIHQLA 285

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LT +PN + F   +   +  S   +N    ++ +D+D +K +ND LG  +GD +L+
Sbjct: 286 FYDFLTKLPNAKLFQQEVEAYIK-STHYNNETFAILFLDLDNFKWVNDSLGHQIGDLLLI 344

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  ++ E++    I++RL G+ F I+   EN    I+  A  +  S+  PI +  RE+ 
Sbjct: 345 EIAAKLKEIISQDSIISRLGGDEFVILAPYENLLT-ISQLANTILCSVKDPIKVQNREVN 403

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--L 711
           V+ SIG + +  +    +++LKNA+ AMY +K+RG N    F     +     ++ D  L
Sbjct: 404 VSWSIGISLYPQNGENYNDLLKNADAAMYESKNRGKNTFRYFNDMMNQDAMYRLELDTKL 463

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N+  +L Y P       + +G+EALI+W     G I+  +F+ IAEE   I  I 
Sbjct: 464 RYAITNNSFFLNYQPKYSFEHGKTIGVEALIRWIDKDLGFIAPDKFIPIAEESSYINEIG 523

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++++   D+     +    PI I IN++ K L      +  + L+ ++   PS ++  
Sbjct: 524 SWVMKQALNDLKIINSKL-SSPISISINVSGKQLEHESFYDEARTLLKESGIEPSLVEFE 582

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-- 889
            +E+ +M N +    +L +++ +G+ +++DDFGT  S +SYL  +P DT+K +   +   
Sbjct: 583 ITETSIMQNIDHVVDILKKIKMLGVKISIDDFGTGYSSMSYLKKLPIDTLKIDREFIKEL 642

Query: 890 GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              E   +I+ +II +AK+ + T +A+ +  E     L  + CD  Q    + PL  + +
Sbjct: 643 EIDEDSKSIVNAIIALAKSFKLTTVAEGVENEEQKLILDGLNCDMTQGYLYSRPLSLDDL 702

Query: 950 LKLLK 954
           L  L 
Sbjct: 703 LAFLS 707



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 1/125 (0%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A   +    W  +I  + +  + +   I GL    +     N+  ++H +DR        
Sbjct: 41  AQEIAQIGHWKLNINTNELFWSDETYRIFGLKPKEVKPSYENFFTFVHEDDRSLVNDAYI 100

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +   +       R+   D +  ++  R     + +G++++ IG  +DITE+ +  + +
Sbjct: 101 KSLE-DKSPYSIIHRIITKDKKLKYVEERCVHKLDESGNVVKSIGTVHDITERVEHEKEL 159

Query: 530 LCNAF 534
              + 
Sbjct: 160 EIASN 164


>gi|26986961|ref|NP_742386.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24981574|gb|AAN65850.1|AE016213_6 sensory box protein [Pseudomonas putida KT2440]
          Length = 631

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/622 (23%), Positives = 280/622 (45%), Gaps = 13/622 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+ ++ + + + +  + L       L   + +   V   VL+  L+ +     +L     
Sbjct: 13  ALYVVLSILWLALAEVMLHSMTDDPLALTVGRQINVVVWVLLSALLIYVSRVRLLNFIGH 72

Query: 397 SQGIF-SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              +   D ER  +A      + + V   D     V        I G     + G   + 
Sbjct: 73  GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVIGQRPSK 132

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
               H      ++ +  +     +G    E   R    + +     I  + +  G++  Y
Sbjct: 133 FKSGHHG-LAFYQEVFATLAE--KGEWSGEIWNRRKSGEIYPQWQTICAIRDDEGELSHY 189

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +DI+  K S + +   A  D LTG+PNR  F DRL   L  +  +      ++++D
Sbjct: 190 VAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFTDRLEQALAAAQANKRG-CALLLLD 248

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D ++ IND LG  +GD +L  +  R+GE+L     LARL G+ FG+++ +     +   
Sbjct: 249 LDHFQSINDGLGHTIGDQLLKLVGERLGEVLGNGVTLARLGGDEFGVLVENCQQVGQAGK 308

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + +  P       + ++AS+G + + S  + + ++L+NA+ A+Y AK  G    
Sbjct: 309 LAQCIIERMREPFQFDGNRLFISASVGISLYPSDALGAEQLLRNADSALYKAKSNGRACY 368

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +        +  ++   +L  A+E  EL + + P+  L     VG+E L++W HP+ G
Sbjct: 369 ALYTEELTAHAQHRVETAAELRRALEQDELRVYFQPVHDLASGRQVGVETLVRWQHPRRG 428

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE   +I  I+ ++L +  R ++ W+ Q      F+ +NI+S+    +EL
Sbjct: 429 LVPPGEFIPIAERTGLIAEIDTWVLRQACRQMVQWQAQGRQLA-FVGVNISSRLFGQHEL 487

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  ++  T  +P+ ++L  +ES VM +PE +   L RLR++G++L +DDFGT  S L
Sbjct: 488 YRQVAEVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSSL 547

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P   +K +   + G    E  IAI+R II +A+++   + A+ I        L 
Sbjct: 548 LRLKRLPVQKLKIDQGFVAGLPVDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQASFLL 607

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
           +  C   Q      P+    + 
Sbjct: 608 QEECQLGQGYWFGRPVPAEDLR 629


>gi|313202137|ref|YP_004040795.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441453|gb|ADQ85559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 923

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/604 (24%), Positives = 273/604 (45%), Gaps = 20/604 (3%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-------QSLAVLGSGD 416
           N       V   +L V+L+    +Q        ++ + ++  R         ++   +  
Sbjct: 315 NTRWIAFGVAATLLCVMLVILWNVQMRRQVRMRTEALHAEIARREQTEAYLKISSRMARV 374

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W   +    +  + ++  I           + + L +     R      L+  +  + 
Sbjct: 375 GSWVLSLPEKTLYWSEEVLDIHECPP-EFAPTLDSALAFYPEEWRSRIVQALEECL-QKG 432

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                E  +    ++  W+ I  + + + +G+I R  G   DI+ QK +   I   AF D
Sbjct: 433 DSFDEELPILTCKDKLLWIRIIGQAVYDLHGNITRIEGAIQDISAQKVAESRIQHLAFYD 492

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LT +PNRQ F+DRL   L  SA        V+ ID+D +K +ND +G  +GD +L  + 
Sbjct: 493 SLTSLPNRQLFIDRLEHTLAYSARTSK-SGAVLFIDLDNFKTLNDTMGHDLGDMLLQQVA 551

Query: 597 RRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLERE 651
            RI   L+  D +AR  G+ F ++L   +      + +    +  +  S A P      E
Sbjct: 552 MRIAGCLRESDTVARFGGDEFVVLLHELSGNHQEAAAQARLVSEKILISFAHPFQFSGYE 611

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
              +ASIG   +     T  E+LK A+LAMY +K  G N +  F        +DRV ++E
Sbjct: 612 HHTSASIGVTLFDQQPTTVDEILKRADLAMYQSKAAGRNVIRFFDPEMQALIADRVEMEE 671

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL   + N E +L Y P +      ++G EAL++W +PK G I  S F+ +AE+  +I +
Sbjct: 672 DLRNGLRNDEFFLCYQPQVDNQ-GRLLGAEALLRWRNPKRGMIPPSTFIPLAEDSGLIVS 730

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++    + ++ W  Q     + + +N+++K L   +  + +  +++ T  +P R+K
Sbjct: 731 VGNWVMYAACKQLVLWAQQPLTSSLTLAVNVSAKQLRQMDFVDQIVEVLNVTGANPKRLK 790

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES+++ N E     +  L+ IG+  ++DDFG   S LSYL  +P D +K + S + 
Sbjct: 791 LELTESLMVNNIEDVIAKMTELKNIGVGFSIDDFGIGYSSLSYLKLLPLDQLKIDQSFVR 850

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +      I R+II + K++   +IA+ +      + L   GCD  Q    + P+  +
Sbjct: 851 DVLTDPNDAVIARTIIALGKSLNLQVIAEGVETLSQREFLDNYGCDAYQGYLFSKPVPAD 910

Query: 948 SILK 951
              +
Sbjct: 911 EFER 914


>gi|83310380|ref|YP_420644.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945221|dbj|BAE50085.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 831

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 136/568 (23%), Positives = 256/568 (45%), Gaps = 14/568 (2%)

Query: 398 QGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           + +    ER SL       + + ++  D     +   P    I G A+    G     L 
Sbjct: 22  EELSQQVERLSLYQAVFDNAFEGMFATDAANRIIAVNPAFTAITGYAAEEAIGNDPRMLS 81

Query: 455 -YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H  D   ++ + D       G+ Q E   R  D +   + + I     ++G + R I
Sbjct: 82  SGFH--DPAFYQEMWDQL--STTGQWQGEVVDRHKDGRPVRLWLSITSQRGADGKVARRI 137

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  D+TE +++ E +   +  D LT +PNR  FLDRL   L L+   +  +  ++ I +
Sbjct: 138 AVFRDVTEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGR-EGSKVAMLFIGL 196

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IND LG  +GD VL    RR    L+  D  AR  G+ F ++L     + ++   
Sbjct: 197 DGFKNINDSLGHWIGDKVLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGVRATAEVEAV 256

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             ++ + +  P  +    I ++ SIG   W         +++NA  A+  AK  G N   
Sbjct: 257 IRSVLEVLQEPFVVEHHHILISCSIGVCMWPGDGEDVDSLMRNATAALQQAKQAGRNTFR 316

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F   + +    R  + ++L  A+   E +LV+ P++ +   ++   EAL++W +   G 
Sbjct: 317 FFTPAMDARAQARSRLADELSGALSQGEFHLVFQPLVDVKSGKVNAAEALLRWHNRYLGV 376

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  +F+ +AEE+ +I+ I  ++L    R+ + W+       I I +NI+ +     ++ 
Sbjct: 377 VSPDQFVPLAEEIGLIRPIGEWLLTAACREALVWQGMGLGE-INIAVNISPRQFQQGDIV 435

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  +  T   P  + +  +E +++ N E     +  +R +G+SL++DDFGT  S LS
Sbjct: 436 GIIRRALEDTRLPPWLLTIEITEGLLLSNGEEILAKMEAIRTLGVSLSVDDFGTGYSSLS 495

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P D +K + S +           ++ +II +  ++   ++A+ +  +  +  +T 
Sbjct: 496 YLKSFPVDVLKIDRSFIADMGDHSDDATMVEAIIALGHSLHLEVVAEGVETKQQLDFITA 555

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
            GCD  Q  + + PL      + + ER 
Sbjct: 556 QGCDVAQGYYFSPPLSGPRFREFVLERL 583


>gi|217962790|ref|YP_002341366.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217065868|gb|ACJ80118.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 909

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 173/870 (19%), Positives = 351/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNLKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  F    +NL    L +        L S+LI++      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 575 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L E +  +I+     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  +  +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 903


>gi|229033933|ref|ZP_04188887.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228728359|gb|EEL79381.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 909

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 169/868 (19%), Positives = 351/868 (40%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F       +   +
Sbjct: 52  SYILYFSNRKEGLPRLFWTILSVGTLSYFIGDIVVAYQRLILKDYYTF----VDASDFFY 107

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           ++ + +     +Y        +      L+  I      + A F   +Y++   ++ + +
Sbjct: 108 LLFLISFAFAFLY----EIIYNRDLLEKLF-MICDICIIVTAQFTLSYYLLIERTIHVSS 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  F    +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMADLLFFLIGINLLFKPLSLLSKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T + +  + ++               +  +           +         
Sbjct: 223 YFTPEYSMFTVTPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   M       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRRQNKILLLAQMQFNSELEKQIELRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   ++  D +   +        +   +  E R    +   +++ +   P+   N  I  
Sbjct: 401 YYSLMYEEDLEEIISAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   +   +  S         VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEVSKR-PFAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  L      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLERLSTPNMKLARLAGDEFTILIENYKKRPDVK 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N 
Sbjct: 577 KIADTIVVAMNEPFEIENQHLHISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL LA+ N E YLVY P I +  ++I+G EALI+W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALIRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   N+
Sbjct: 697 GDIPPCEFIPIVEETPQVVPLGHWVLKESCRQLKIWH-TFGYQDLKISVNLSAKEFQQND 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S 
Sbjct: 756 LISDISQILTDVNVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  +  +K L++
Sbjct: 876 QKNNCKYMQGYYFSKPLTSHQFIKFLQK 903


>gi|171058506|ref|YP_001790855.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Leptothrix cholodnii SP-6]
 gi|170775951|gb|ACB34090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptothrix cholodnii SP-6]
          Length = 1069

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 147/587 (25%), Positives = 278/587 (47%), Gaps = 13/587 (2%)

Query: 375  LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTT 431
             VL    I F     VL T      +    +R  L       S + ++  D  +  +T  
Sbjct: 467  AVLSARRIVFQGRDAVLTTLAPINHLKQLEQRLELWAKVFETSSEGIFIVDAQQRILTAN 526

Query: 432  PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              +    G     + G     L     + R  ++++++      RG  Q E R+      
Sbjct: 527  WALTRSTGHDLIELMGGDPAEL-LAGADARQTWQSLVERV--QTRGSWQGEVRICRRAGG 583

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             +   +    + +  G +  ++  + DIT++K+S   I   A  D LT +PNR   ++RL
Sbjct: 584  DYPAWLLANAVRDRAGHVSHWVCTSIDITDRKESERRIRFLAEHDVLTELPNRALCIERL 643

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               L  +      +  V+ ID+D++K IND LG  VGD +L S+ +R+ + ++  D ++R
Sbjct: 644  RLALQQARRTGQ-KVAVLFIDLDRFKNINDSLGHHVGDGLLRSVAQRLVDGVRAGDTVSR 702

Query: 612  LSGNRFGIILISENNSLKIADFA-IAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            L G+ F ++L    +  ++A      +   +  P  +   EI V+ S+G + +       
Sbjct: 703  LGGDEFVVVLNGLADIEEVAHVVEQRLIPRVRQPHGVQGAEIHVSCSVGISVFPDDAQDI 762

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII 728
             E+++ A++AMY AK +G N  + F     +  +  +  +  L  AV   +L L Y P I
Sbjct: 763  DELMRQADVAMYQAKAQGRNGAQFFTAEMNQRAQARLMVENHLRSAVAQGQLSLHYQPRI 822

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
             + D  + G+E L++W  P+ G++    F+ +AEE  +I  I  +++E     I  WR Q
Sbjct: 823  HVADGRVAGVEGLLRWHSPELGHVPPDRFIPVAEETGLIIEIGAWVIEAACAQIERWRGQ 882

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                 + + IN+++  L D  L + ++A + +    P +++L  +ES++M   +   + L
Sbjct: 883  GLQE-VAVSINLSALQLRDPGLLDVLRASLERHAVPPGQLELELTESILMDQVDAHLVTL 941

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
              LR++G+ L++DDFGT  S L+YL   P D +K + S +       + +AI+++II + 
Sbjct: 942  HALRELGLRLSIDDFGTGYSSLNYLTRFPIDQLKIDRSFVRDMLDDPRDLAIIKAIIGLG 1001

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +   ++A+ +  E++++ L   GCD +Q  H A P+  ++    L
Sbjct: 1002 HTLGLKVVAEGVERELEVQALRAAGCDELQGYHFARPMAADTATAWL 1048


>gi|254000173|ref|YP_003052236.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253986852|gb|ACT51709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 950

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/604 (24%), Positives = 273/604 (45%), Gaps = 20/604 (3%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-------QSLAVLGSGD 416
           N       V   +L V+L+    +Q        ++ + ++  R         ++   +  
Sbjct: 342 NTRWIAFGVAATLLCVMLVILWNVQMRRQVRMRTEALHAEIARREQTEAYLKISSRMARV 401

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W   +    +  + ++  I           + + L +     R      L+  +  + 
Sbjct: 402 GSWVLSLPEKTLYWSEEVLDIHECPP-EFAPTLDSALAFYPEEWRSRIVQALEECL-QKG 459

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                E  +    ++  W+ I  + + + +G+I R  G   DI+ QK +   I   AF D
Sbjct: 460 DSFDEELPILTCKDKLLWIRIIGQAVYDLHGNITRIEGAIQDISAQKVAESRIQHLAFYD 519

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LT +PNRQ F+DRL   L  SA        V+ ID+D +K +ND +G  +GD +L  + 
Sbjct: 520 SLTSLPNRQLFIDRLEHTLAYSARTSK-SGAVLFIDLDNFKTLNDTMGHDLGDMLLQQVA 578

Query: 597 RRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLERE 651
            RI   L+  D +AR  G+ F ++L   +      + +    +  +  S A P      E
Sbjct: 579 MRIAGCLRESDTVARFGGDEFVVLLHELSGNHQEAAAQARLVSEKILISFAHPFQFSGYE 638

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
              +ASIG   +     T  E+LK A+LAMY +K  G N +  F        +DRV ++E
Sbjct: 639 HHTSASIGVTLFDQQPTTVDEILKRADLAMYQSKAAGRNVIRFFDPEMQALIADRVEMEE 698

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL   + N E +L Y P +      ++G EAL++W +PK G I  S F+ +AE+  +I +
Sbjct: 699 DLRNGLRNDEFFLCYQPQVDNQ-GRLLGAEALLRWRNPKRGMIPPSTFIPLAEDSGLIVS 757

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++    + ++ W  Q     + + +N+++K L   +  + +  +++ T  +P R+K
Sbjct: 758 VGNWVMYAACKQLVLWAQQPLTSSLTLAVNVSAKQLRQMDFVDQIVEVLNVTGANPKRLK 817

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES+++ N E     +  L+ IG+  ++DDFG   S LSYL  +P D +K + S + 
Sbjct: 818 LELTESLMVNNIEDVIAKMTELKNIGVGFSIDDFGIGYSSLSYLKLLPLDQLKIDQSFVR 877

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +      I R+II + K++   +IA+ +      + L   GCD  Q    + P+  +
Sbjct: 878 DVLTDPNDAVIARTIIALGKSLNLQVIAEGVETLSQREFLDNYGCDAYQGYLFSKPVPAD 937

Query: 948 SILK 951
              +
Sbjct: 938 EFER 941


>gi|94263467|ref|ZP_01287280.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93456197|gb|EAT06336.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 935

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 142/586 (24%), Positives = 252/586 (43%), Gaps = 17/586 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ +++              E  +  +    +     D     V+     A   G  
Sbjct: 347 MLESLAEYLAPLLAARLESRRAEELVARILETIDEGFIIIDHEFKIVSANRAYAESAGYP 406

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498
              + G     +   H  D+  +    D  V +                A  +  ++  +
Sbjct: 407 LAEIIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPRTAVHTHYTAAGEPLYVETK 464

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             P+  +  G + R I +  DIT++K   + I   AF D LT +PNR+ F DRL   +  
Sbjct: 465 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAISA 524

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           SA        V+ +D+D +K +ND  G  VGD +L    +RI E ++  D ++R  G+ F
Sbjct: 525 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAKRIQETVREDDTVSRQGGDEF 583

Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            ++L + +     A       A  +R ++  P +L   E  +  SIG   +     +  E
Sbjct: 584 MVLLNNLSPDRHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGIGLFMGHDTSVDE 643

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +LK A+ AMY AK+ G N V  F             +  DL  A+   +  L Y P    
Sbjct: 644 LLKRADAAMYQAKNAGRNQVRFFDPEMQAELEQASALVMDLRQAIWQGQFQLHYQPQTA- 702

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EAL++W HP+ G +S  +F+ +AEE  +I AI  ++L+     + +W D   
Sbjct: 703 NDGRIIGAEALLRWTHPERGPVSPMQFIPLAEESNLILAIGRWVLQEACGQLAAWADLPA 762

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++++     E    ++ +++ T   P  +KL  +ES+VM     +   +  
Sbjct: 763 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMHE 822

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR +GI  ++DDFGT  S L+ L  +P + +K + + +          AI+ +II M + 
Sbjct: 823 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 882

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++  +IA+ +  +  +  L R GCD  Q    + P+       LL 
Sbjct: 883 LDFQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAKFAHLLS 928



 Score = 44.6 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 15/173 (8%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A       +    +R       +       D            AT+LG     ++   R 
Sbjct: 51  ALRKSQLELEESRDRYVELYDFAPVGYVTLDPKGRIREANLTAATMLGSERSRLYQ--RG 108

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII--RIRPMSNSNGDI 509
              ++     + +   L +    R  R + E  ++  D +  +       R +   +G+ 
Sbjct: 109 LGRFVSQECLEPWYLHLAAA-RQRDDRQECELLLQRDDKKTTFFAHLASKRVVKEESGE- 166

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                   DIT++K++       A    L       +F +R+  I      ++
Sbjct: 167 RFIHTTLTDITQRKET--ETELAAHHRKL-------AFRNRIAQIFLTRGHEE 210


>gi|152992783|ref|YP_001358504.1| hypothetical protein SUN_1192 [Sulfurovum sp. NBC37-1]
 gi|151424644|dbj|BAF72147.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1223

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/558 (24%), Positives = 264/558 (47%), Gaps = 17/558 (3%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            Q+  +    D V   D+    +        +LG  +  M G     +  ++  D +  + 
Sbjct: 670  QAQILEQIHDAVISTDLDNKIIHWNHGATELLGYDASEMIGRN---IDILYPED-ELKKA 725

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-- 524
                      G  + + R +  + +  +  +    + +    I+     + DI+++K+  
Sbjct: 726  QWMKMQTLLYGSYRDQIRKQTKEGKMIYTDVSASVLRDEKKRIIGITRYSQDISQKKEIE 785

Query: 525  -----SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
                   + +   A+ D LT +PNR  F DRL   +  +    N +  V  ID+D +K I
Sbjct: 786  LELLEQTKQLNFQAYHDPLTQLPNRTLFNDRLEQTITYAHRH-NEKFGVFFIDLDNFKLI 844

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG  +GD+VL  ++ R  + ++  D L+RL G+ F +++   N     A  A  M  
Sbjct: 845  NDTLGHHLGDEVLKIVSHRFSKCIREEDTLSRLGGDEFTVLVHELNTPESAAKIAGKMMG 904

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            S+   + +  + + VTASIG + +    +  +++LK A+ AMY AK  G N+ + +    
Sbjct: 905  SLKEEVVVEGQTLHVTASIGISLYPRDAVYKNDLLKYADSAMYKAKEVGRNNYQFYSSEM 964

Query: 700  F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++  ++++L  A+  ++L + Y P I   +  +VGLEAL++W+HP+ G I    F
Sbjct: 965  TNLAMEKATMEKELRKAIAKNQLRVYYQPQINARNRSVVGLEALVRWEHPEKGLILPDAF 1024

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AEE  +I+ ++ +++ +   D++ W      P I + +N+    L+       +Q  
Sbjct: 1025 IPLAEETGLIREMDYYVMHQAMSDMVEWYHIGLNPGI-LSLNLPISQLMKENFFYTLQNT 1083

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            I KT +    +    +E+ VM NP+ S   L  L ++GI +++DDFGT  S L+YL  +P
Sbjct: 1084 ILKTGFKVKWLTFEITETQVMLNPKHSIKKLYMLNQMGIKISIDDFGTGYSSLAYLKRLP 1143

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + + +       +  AI  ++I +A+++   IIA+ +     ++ L   GC  I
Sbjct: 1144 VDKLKIDKTFIFDLPYNTEDCAITNAVIALAESLHLEIIAEGVEHRDQVRYLLENGCYII 1203

Query: 936  QDSHVASPLGFNSILKLL 953
            Q  H + P+    + + L
Sbjct: 1204 QGYHYSRPIPKQEMTQYL 1221



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 6/150 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLAS 442
           +Q         +      E Q  A+           W+ D+  +    +     I  L  
Sbjct: 403 MQEAQKEFQKLEEKTRVIEAQKEALHRIQQIGHFGSWEIDLKHNTAQWSKRSYDIYQLDP 462

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +    +  +L  +   DR      L S    +   +    RVR  D +   ++I  + +
Sbjct: 463 ENTQPTLDTFLSRVVKKDRHIAYEGLRSLQDGKVKSVS--LRVRREDGEIITVLINAKML 520

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  G+  R +G   DITEQ +  +     
Sbjct: 521 FDKQGEPDRIVGTTLDITEQLRLKQENKEL 550


>gi|126659426|ref|ZP_01730560.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126619262|gb|EAZ89997.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 643

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 157/580 (27%), Positives = 278/580 (47%), Gaps = 13/580 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIR 450
                 Q +    +R    +    D+VW      +++        T+ G         + 
Sbjct: 64  ELRMNEQALRLSQKRLHSILGSIDDVVWSIVPQTNQILYLNHATETVYGRPITDFLDNLN 123

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   I+ +D+   +      + Y+ G    E+R+   +   HW+ +R R + ++  + +
Sbjct: 124 LWTEIIYPDDQQRVKES--QQLLYKTGIQDIEYRILWPNQTIHWIRVRSRLIKDNQENPI 181

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R  G+  +ITE K+  E +  +A  DNLTG+PNR   +DRL   L     DDN R  V+ 
Sbjct: 182 RIDGLTTEITEHKQIKEQLRHDALHDNLTGLPNRTLLMDRLEQGLKRCQRDDNRRFAVLF 241

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D++K IND LG   GD +L+ L+ R  + L+  D L+RL G+ F I+L + +N  + 
Sbjct: 242 LDLDRFKLINDSLGHLTGDQLLIVLSHRFSQCLRAEDTLSRLGGDEFVILLENLSNIDEA 301

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-----SKITSSEMLKNAELAMYHAK 685
              A  +   +  PI L   EI ++ SIG           +    +E+L++A+ AMY AK
Sbjct: 302 IAIADRIHNILKEPILLQSEEIFISVSIGIVFGGEKPVYNNPDQVAELLRDADTAMYRAK 361

Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +G    E F+ S        +    +L  A+E  E  + Y PII L  + I G EAL++
Sbjct: 362 AKGPGTSEVFQPSMHTHVVKRLQVANELQKAIEREEFIVYYQPIISLESDRIDGFEALVR 421

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIAS 802
           W H + G I+ ++F+ IAEE   I  I+ ++L      +  W+ Q     P+ + +N++S
Sbjct: 422 WQHQEKGLIAPTDFIPIAEETEAILKIDKWVLRHACTQLGLWQQQFPNIQPLTMSVNLSS 481

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K L   +  E +  ++++T      +KL  +ES VM        +L  +++  I L LDD
Sbjct: 482 KHLTKPDFIEVLDKILAETGLREKSLKLEITESFVMEQSPTVLDILDEIKQRKIELCLDD 541

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL    F+ +K + S +        +  ++++I+ +A  +   ++A+ +  
Sbjct: 542 FGTGYSSLSYLDCFSFNILKIDRSFIKRLVGENDKCEMIKAIVNLAVTLNMKVVAEGVET 601

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            +   +L  + C Y Q   +  PL   +I +LL+++  ++
Sbjct: 602 NVQRDKLKALKCSYGQGYGLFPPLDSQTISRLLEKQNTII 641


>gi|152993212|ref|YP_001358933.1| signal transduction protein [Sulfurovum sp. NBC37-1]
 gi|151425073|dbj|BAF72576.1| signal transduction protein [Sulfurovum sp. NBC37-1]
          Length = 958

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 278/586 (47%), Gaps = 11/586 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           ++ I +   +IQ++      +  I      ++ +      GD +   D  +  ++  P  
Sbjct: 371 IVPIFMDGELIQYLAIKLDVTAYIRQQKILQQAATVYENIGDGIVITDENKKIISINPAF 430

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           + + G     + G     +  +   D+  +  +    +    GR          D +   
Sbjct: 431 SDLFGYTKEELVGKEPMIIMSL-KEDKVFYGNMWHQLLT--AGRWSGRVENVTKDGKVLP 487

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I  + N   DI  YI I  ++ E  K        A+ D+LTG+PNR SF  R+  I
Sbjct: 488 VWLTIAVVRNEKQDIQNYIAIYTNLEEIIKMETKANYLAYHDSLTGLPNRSSFEMRINEI 547

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L ++   +  +  V+ ID+D++K IND LG  +GD++L+ L  RI   L    +LAR+ G
Sbjct: 548 LSVADI-EKDKIAVLFIDLDRFKVINDTLGHHIGDEMLIELAHRIQTQLDNDTLLARIGG 606

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +I+  + +  +  + A  +   I  PI++    +  TASIG A +       +E++
Sbjct: 607 DEFVVIMKLKMHKKEAGEQAEKLLDVIREPIDIQNYHLNTTASIGIAIYPDDGKDKNEIV 666

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A+ AMYHAK +G +  + +          R+ ++++L  A+E  EL L + P   L  
Sbjct: 667 KHADSAMYHAKEKGKDTFQFYTKQLSLDVEARLNLEQELLHAIERKELLLHFQPQYALES 726

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I+G+EAL++W + + G +S  +F+ IAEE  +I +I  F+ E   +  + W+ +    
Sbjct: 727 RNIIGVEALLRWKNEQLGIVSPEKFIGIAEETGLIVSIGYFVFEEACKTYMHWQKEGIDI 786

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I IN++S    + ++ E +Q +I +      +I++  +E  +M     +  +L  LR
Sbjct: 787 D-SISINMSSIQFREEDIFERLQEIILRIGIPAHKIEIEITERFIMEYSTINLTILEDLR 845

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AIL-RSIIPMAKNIE 910
            IG  +++DDFGT  S +SYL  +  DT+K + S +T        A++ ++II ++K++ 
Sbjct: 846 NIGCKISIDDFGTGYSSMSYLKRLALDTIKIDKSFITDLPHDSHDAMVSKAIIALSKSLG 905

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +IA+ I        L + GCD  Q  + A P+     +    E 
Sbjct: 906 YQVIAEGIETPEQEAFLKKNGCDIGQGFYFAKPMTSEDFISFFNEY 951



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +  G  ++  L+ F +I   +     ++ + +       A+  S +++   D  R     
Sbjct: 250 IGIGFFVLAFLMLFLLILSYIRVKKNAKELLA----FRYAIENSDNVIVITDAQRHIEYV 305

Query: 431 TPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                   G     + G   N L    +      N    LDS       + Q E   +  
Sbjct: 306 NDAFELRTGYKKEEVLGENPNILKSDLVSPEIYKNLNETLDS-----GEKWQGELINKRK 360

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           D    +  + I P+   +G++++Y+ I  D+T   +  + +   A 
Sbjct: 361 DGSLIYEKVSIVPIF-MDGELIQYLAIKLDVTAYIRQQKILQQAAT 405


>gi|324329249|gb|ADY24509.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 909

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 174/870 (20%), Positives = 351/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNLKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  F    +NL    L +        L S+LI++      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGEAIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 575 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L E +  +I+     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  +  +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 903


>gi|71277969|ref|YP_270582.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71143709|gb|AAZ24182.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
            psychrerythraea 34H]
          Length = 1086

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 150/563 (26%), Positives = 267/563 (47%), Gaps = 14/563 (2%)

Query: 401  FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                E   LA      S + +   D   + +   P ++ I G +S  + G   N      
Sbjct: 515  RQQEEDLKLADIVYQNSSEAMMITDSKNEIIAINPALSEITGYSSSELIGKNPNVFSS-G 573

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              + + ++ + +       G  Q E      + + +   + I  + +  G++ R I + +
Sbjct: 574  KQNPEFYQLMWEEIK--LTGTWQGEIWNTKKNGKEYPEWLSISTIYDDYGNVFRRIALFS 631

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DITE+KK    IL  A  D+LT +PNR  F+DRL   + +S    N +  ++ ID+D +K
Sbjct: 632  DITEKKKKDALILRQAKYDSLTNLPNRIMFIDRLEQEIKVSHR-KNQKFALIFIDLDNFK 690

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            KIND  G   GD +L+   +RI   ++  D +ARL G+ F I+L    +   +      +
Sbjct: 691  KINDTRGHVYGDALLIEAGKRITHCIREVDTVARLGGDEFTILLSDIADIHNVESICQKV 750

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++++ P  + +    ++AS+G   + +   ++ E+LKNA+ AMY AK+ G N    F  
Sbjct: 751  LQTLSEPFFISKMYTYISASLGVTIYPNDASSTLELLKNADQAMYLAKNLGRNRFCYFTA 810

Query: 698  SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S      D + +  DL  A+  ++L + Y PI+ L    I   EAL++W HP  G +S +
Sbjct: 811  SMQEEALDHLELINDLRKAISLNQLEVFYQPIVELQTGVIRKAEALLRWKHPVRGMVSPA 870

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGM 814
            EF+ +AEE  +I  I  ++ ++  + I + +DQ     I I +N +     ++ +  + +
Sbjct: 871  EFIPLAEESGLIIEIGDWVFKQTVQHINTCKDQLG-LDIQISVNKSPVQFRESIDQLDWL 929

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             A +++       I +  +E ++M N   +   L + R  GI L++DDFGT  S LSYL 
Sbjct: 930  -AYLAENQLPGENIVIEITEGLLMNNNTSTMERLSKFRSAGIGLSMDDFGTGYSSLSYLK 988

Query: 875  YIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
                D +K + S           ++   +II MA+ +   +IA+ I  +  ++ L   GC
Sbjct: 989  KFALDYLKIDQSFTRNIAPGSEDMILSEAIITMAQKLGLKVIAEGIETKEQMELLIGAGC 1048

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
            DY Q  + + P+     L+LL  
Sbjct: 1049 DYGQGYYFSRPIPAEDFLQLLAS 1071



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 7/214 (3%)

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV--LIVI 380
               I      +   +  I    L  I  I     +T +     +   +       L  I
Sbjct: 315 LIVSIGFSSALFLIVLYFIIGLHLSTIRSINSLTKVTGKFYGGDLDARVTLDTHDELNNI 374

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            +GF  +          +   S   R    +  S   +W   I             + G+
Sbjct: 375 ALGFNEMATSFQNLMIDKEEISS--RLRAIIDNSPIGIWFTGIDGRYHFVNKTFCNLAGI 432

Query: 441 ASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               M     +     +      +      + +      + +E  +  ++ + + + I  
Sbjct: 433 KEEDMLNTPSSNLAELLGDEIAHHCLDSDKAALAQDSPHVSFET-IPRSNAKPYILEITK 491

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             + N+ G+++  IGI+ DIT  K+  E  L  A
Sbjct: 492 VKLKNAQGEVVGLIGISKDITN-KRQQEEDLKLA 524


>gi|289208760|ref|YP_003460826.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288944391|gb|ADC72090.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 706

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 145/584 (24%), Positives = 271/584 (46%), Gaps = 18/584 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +L       H       ++ + +  ER      L V  S DIV+  D           + 
Sbjct: 117 LLATVRNALHKKDLEDANRHMRARLERSERLHRLIVNNSPDIVFILDRDGRFRFVNSRVH 176

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF----RVRAADNQ 491
            +LG +   +       L  +  +D +      +            E     R  A   +
Sbjct: 177 ELLGYSRQDLLDT--RVLDLVETDDHEKAEYFFEQAGRSHAHIRSVELALKPREMARTRR 234

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           +  + +     S+  G+ L Y G A DIT++K+S   I   A+ D LT +PNR  F DR+
Sbjct: 235 YFEVAVWPTAASDDTGETLVY-GTARDITDRKESEAFINFQAYHDLLTRLPNRALFRDRV 293

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              +  +    +    VM ID++++K IND LG  +GD +L ++ +R+   ++  D L+R
Sbjct: 294 DVAIAQAQRQGHP-LAVMFIDLNRFKVINDSLGHTIGDRLLQAVAQRLLGCIRKGDTLSR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITS 670
             G+ F ++L   +      D A  + +S+  P +L    E+ V ASIG A +     T 
Sbjct: 353 FGGDEFTLLLPQISRQEAAVDVAEKILESLNEPFHLGGDHELYVGASIGIAIYPEGGDTL 412

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPII 728
             ++++A++AMY  K+ G N +  F          R+ +++DL  A+E  E +++Y P +
Sbjct: 413 ETLIRHADIAMYREKNTGKNGIRLFAPEMHGNTPHRLQLEQDLRKALEREEFHILYQPQV 472

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                +++G+EAL++W+HP  G +  +EF+ +AE+  +I  ++   L     DI      
Sbjct: 473 DGETGQLLGVEALVRWNHPDRGMLGPAEFIPVAEDTRLIVDLDRATLRNALGDIRKAHQH 532

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              P + + +N++   +  ++  +G+  L+ +T +    +++  +ES++M +   +   L
Sbjct: 533 V--PNLRLAVNLSPVLIERDDFVDGVLGLLVETGFPAELLEIEITESLLMSDTHDTVAKL 590

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAK 907
            RL + G+ + +DDFGT  S LSYL  +P  T+K + S          A I+ +I+ MA+
Sbjct: 591 NRLCEAGVQVAVDDFGTGYSSLSYLQKLPVHTLKIDRSFTLTICTDGEACIVNAIVSMAR 650

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++  I+A+ +      + L R+GC  +Q      P     +L+
Sbjct: 651 GLQMNIVAEGVETAAQQEYLRRLGCPMMQGFLFGHPSPLADLLQ 694


>gi|113971088|ref|YP_734881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113885772|gb|ABI39824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1009

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/563 (26%), Positives = 261/563 (46%), Gaps = 12/563 (2%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T       I G +   + G     L Y  +N
Sbjct: 451  IEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTEITGYSESEIRGQHIRML-YCDLN 509

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                +  + +      +G  Q E R R  +N+ + + + I  +++ +G   R + + +DI
Sbjct: 510  GHGFYTEMNNEIRE--KGEWQGEMRQRRKNNEEYVIWLTINTINDKDGQPYRRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K+S   I   A  D LTG+PNR+  L+ L   +  +  + N    +M +D+D +K++
Sbjct: 568  TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRN-HFALMFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L +  +   I   A  + +
Sbjct: 627  NDTLGHAMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             I+ P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RISEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ +   E++  EAL++W HP+ G +S +EF
Sbjct: 747  QEYAKYRMRLIQDLRQAVVNKEFELHYQPIVTMGTGEVLKAEALLRWFHPERGQVSPAEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR    WR    +  I I +N +     D   L      
Sbjct: 807  IPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVE-IQISVNKSPIQFRDEGTLLHNWLE 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+ +   + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLQELDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 926  DIDYLKIDQSFTRHIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLNAGCDY 985

Query: 935  IQDSHVASPLGFNSILK--LLKE 955
             Q    + P+         LLKE
Sbjct: 986  GQGYLFSKPVSAAEFTSQYLLKE 1008



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+       V A     + + +  E+  L +  S   VWDWDI  D +      A ILG 
Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGC 365

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R++  +    W++   +
Sbjct: 366 DIDMLNANSRQWMDSIVPEDRPKVLHSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGK 425

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 426 VVSRDTNNNALRMCGTYTDITEAKLIEESLKLSALVYD 463



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 16/320 (5%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286
           V  Y +I      +   L    + +      + + S+  ++              V  + 
Sbjct: 20  VFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMYEPGIIFDTRSVLLCVTGLF 79

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK--------GYERAV 338
           F G+  +  +     Y   +  +   + LA I+      +I+   +        G E   
Sbjct: 80  FGGLPTVVAVIITGAYRYSIGGAAMWVGLAVIISSGLIGVIWRQYRKSYLANISGREIFS 139

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
                 I++ +WF  L   +   +   I+ P L    +   +L    ++          Q
Sbjct: 140 FAFVVHIVMLLWFFLLPSHVAIPVLQKIMLPVLTIYPLATWLL--SRLLSRRFELERDEQ 197

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               D              +    + +  +   P +  +L  +   +      W    H 
Sbjct: 198 IRLQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHP 255

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D +      +  +  +    + + R  A D+   +  + +     +N  +L  I    D
Sbjct: 256 DDIEADIVKFELMLAGKIDNYEMDKRFIAKDSAIVYTHMTVAC-KRANHQVLLVIAGYLD 314

Query: 519 ITEQKKSLEGILCNAFQDNL 538
           +T Q  +L      A ++ L
Sbjct: 315 VTAQ--TLADREVLASREQL 332


>gi|77463595|ref|YP_353099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77388013|gb|ABA79198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 833

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 141/589 (23%), Positives = 256/589 (43%), Gaps = 21/589 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F +I+ V       + +     R       +  ++W  D     V  +       G +  
Sbjct: 245 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWVTDTEGRNVFVSRSWLGATGQSLD 304

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  +H +DRD    I    +  R      EFR+R  D  + W+I    P  
Sbjct: 305 EALGT--GWIDAVHPDDRDATAAITREAMRRRIA-YTNEFRIRRKDGGWCWVIDVGHPRL 361

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            ++G  + YIG   DI+ ++++ +        +   A  D LTG+PNR  F D     + 
Sbjct: 362 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 420

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            ++        V+++D+D +K +ND  G  VGD VL  +  R+   ++  D +ARL G+ 
Sbjct: 421 -ASLAPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 479

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +I     +  +  D A  +  +I+ P +L      V AS+G A       ++ E+++ 
Sbjct: 480 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGHGDSAEEIMRY 539

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G      F     +    R  +K  L  A+   EL + Y P+I L D +
Sbjct: 540 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 599

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W     G I+  +F+ +AEE  +I  +  ++L         W D      +
Sbjct: 600 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGDWVLHEACAQAARWPDS-----V 654

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++        L + + + +  +   P R++L  +ESV++   +R+  +L  LR +
Sbjct: 655 SVAVNLSPLQFHGGALVDQVASALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRAL 714

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G  + +DDFGT  S L YL   PFD +K + S +    + R   AIL+++  + ++++  
Sbjct: 715 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLDMR 774

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              + +  +  +      G D  Q    + PL    I   +    P  +
Sbjct: 775 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 823



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +      G  L+V     T ++           +          +       + +  
Sbjct: 104 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 157

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                  +  +  I GL +G+    +  W   +H  DR + R      V   +     E 
Sbjct: 158 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPCDRRDLRRAWIRSVRGGQ-SFDAEH 214

Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           R++  D  + W   RI     + +  + R+ GI  D+ E++ ++E + 
Sbjct: 215 RLQMPDGAYRWFRARIVARPRDQDQRVDRWFGIIEDVHERRTTVEQLR 262


>gi|330806854|ref|YP_004351316.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374962|gb|AEA66312.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 635

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 140/637 (21%), Positives = 274/637 (43%), Gaps = 16/637 (2%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            M+     ++L   W+ +  +    +          ++       L    ++        
Sbjct: 8   AMRVALLYLVLSVIWLQLTGYLSTSFFDQFADRQRWLLINGYAWALFSAGLVFLARARIS 67

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
                           + +     + + V   D     V        I G     + G  
Sbjct: 68  RFFAKGEHGADRERLRQAAAVFDCTREGVLVTDRNGLIVHVNRAFIAITGYVRDEVLGQR 127

Query: 449 IRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +    H      +    L+S     +G    E   R    + +     IR + + +G
Sbjct: 128 PSLFKSGRHGPEFYRDMFASLNS-----QGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSG 182

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  Y+ + +DI+  K S   +   A  D LTG+PNR  F DR    L  +         
Sbjct: 183 EVSHYVAVFSDISAIKDSEHELAYLAHHDPLTGLPNRLLFSDRTEQALASAQLHKRG-CA 241

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++D+D +K IND LG  VGD++L  +  R   L      LARL G+ F +++ + +  
Sbjct: 242 LLLLDLDHFKNINDSLGHNVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQP 301

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            + A  A  +  ++  P+   +  + + ASIG + +    +++ ++L+NA+ A++ AK+ 
Sbjct: 302 GQAAALARRILDALKEPLRFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKNA 361

Query: 688 GGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +    +        +  ++   +L  A++  EL + Y P+  L    ++G+EAL++W+
Sbjct: 362 GRDGYALYTEELTAHAQQRVEIAFELRRALQQQELRVHYQPVHELATSRLIGVEALVRWE 421

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +S +EF+ IAE   +I  ++ +++++  R +  W+        F+ +N++S+  
Sbjct: 422 HPTRGLVSPAEFIPIAERTGLIAQVDAWVMDQACRQMCQWQQAGVALS-FVAVNVSSRLF 480

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              EL + +  ++  T   P  ++L  +ES VM +PE +   + RLR++G+ L +DDFGT
Sbjct: 481 ARRELYDQVAQVLHDTGLDPGCLELEVTESAVMEDPEVALEQMHRLRELGVRLAIDDFGT 540

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L  L  +P   +K +   + G    E   AI+R II +A ++   + A+ I     
Sbjct: 541 GYSSLLRLKRLPVQKLKIDQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQCEQ 600

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              L    C+  Q      P+   ++L    +R P++
Sbjct: 601 AAFLLGQACELGQGYWFGRPV-AAALLDW--DRVPVI 634


>gi|126462427|ref|YP_001043541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17029]
 gi|126104091|gb|ABN76769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 833

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 142/589 (24%), Positives = 256/589 (43%), Gaps = 21/589 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F +I+ V       + +     R       +  ++W  D     V  +       G +  
Sbjct: 245 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWMTDTEGRNVFVSRSWLGATGQSLD 304

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  +H +DRD     +      RR     EFR+R  D  + W+I    P  
Sbjct: 305 EAMGT--GWIDVVHPDDRD-ATASITRDAMRRRIAYTNEFRIRRKDGGWCWVIDVGHPRL 361

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            ++G  + YIG   DI+ ++++ E        +   A  D LTG+PNR  F D     + 
Sbjct: 362 LADGTFIGYIGCCVDISARRQAEEDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 420

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            ++        V+++D+D +K +ND  G  VGD VL  +  R+   ++  D +ARL G+ 
Sbjct: 421 -ASLTPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 479

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +I     +  +  D A  +  +I+ P +L      V AS+G A       ++ E+++ 
Sbjct: 480 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRY 539

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G      F     +    R  +K  L  A+   EL + Y P+I L D +
Sbjct: 540 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 599

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W     G I+  +F+ +AEE  +I  +  ++L         W D      +
Sbjct: 600 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGDWVLHEACAQAARWPDS-----V 654

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++        L + + + +  +   P R++L  +ESV++   +R+  +L  LR +
Sbjct: 655 SVAVNLSPLQFHGGALVDQVASALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRAL 714

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G  + +DDFGT  S L YL   PFD +K + S +    + R   AIL+++  + ++++  
Sbjct: 715 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLDMR 774

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              + +  +  +      G D  Q    + PL    I   +    P  +
Sbjct: 775 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 823



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +      G  L+V     T ++           +          +       + +  
Sbjct: 104 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 157

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                  +  +  I GL +G+    +  W   +H  DR + R      V   +     E 
Sbjct: 158 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPGDRRDLRRAWIRSVRGGQ-SFDAEH 214

Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           R++  D  + W   R+     + +  + R+ GI  D+ E++ ++E + 
Sbjct: 215 RLQMPDGAYRWFRARVVARPRDQDQRVDRWFGIIEDVHERRTTVEQLR 262


>gi|46201536|ref|ZP_00054870.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 822

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/592 (23%), Positives = 265/592 (44%), Gaps = 13/592 (2%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            L    +             V+      + +       +     +G+ ++  D  R  + 
Sbjct: 225 RLTITAMREGSDNELRFTVAVVEDVTEKKRLEDHMRLAATVFESTGEGLFVTDEKRRIIH 284

Query: 430 TTPDIATILGLASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             P    + G  +  + G    +L    H     D     L        G+ Q E   R 
Sbjct: 285 VNPAFTELTGYPADEVIGRTPKFLASGRHKPEFYDQVFKTLAE-----TGKWQGEIWNRR 339

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
              +     + I  + +  GD+  Y+ + +DIT +K+  E +   A  D LT +PNR  F
Sbjct: 340 KTGEMFAEWLNISVVRDERGDLTNYVAVFSDITSRKQDEERLNYQANHDPLTRLPNRTLF 399

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL+  L  +  +  +   ++ ID+D +K++ND LG   GD +L  +  R+   ++  D
Sbjct: 400 QERLSRALTRAHRNQTI-VALLFIDLDFFKQVNDTLGHLAGDILLQQVAERLSSCVRQGD 458

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL+G+ F +IL         A  A  +   +A P +L   E  +++SIG A + S  
Sbjct: 459 TVARLAGDEFTVILEEITEPRDCAVVAHKILSLMAEPFDLQGHEARISSSIGVALYPSDS 518

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
             +  ++K A+ AMY AKH+G N        +++   +R+ ++  L  AVE  E  L Y 
Sbjct: 519 GDAQTLIKLADAAMYRAKHQGRNACRFHSESINAQAFERLALESALRHAVERQEFLLHYQ 578

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI      ++V +EAL++W H  +G I  ++F+ +AEE  +I  +  F+LE   R   SW
Sbjct: 579 PIFDARSGQVVAVEALLRWRHQDFGLIMPNQFLPLAEETGLIGPVGKFVLEEACRQTKSW 638

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            D      + + +N++++ L   EL E + + +  +   P  ++L   ES ++   +   
Sbjct: 639 LDA-GYSGLKVGVNLSNRQLRAPELIEDIASALEASGLPPGALELDVPESAIIDKGQDVD 697

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
            +  + + +G+ + +D FG+  S  S+L  +P +T+K +   +  +    +   I+ +I+
Sbjct: 698 AIFTQFKSLGVRMAIDAFGSGYSSFSFLRKLPSNTLKIDQGFVRDAAAGAEESEIVTAIV 757

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +  +++A  I  E  +  L +   D +Q    A P+    + + L+ 
Sbjct: 758 AVARGLHLSVVAPSIETEEQLAHLGKYDFDMVQGFLFAHPMPAEELTEFLRS 809



 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 3/151 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             I++ +        +     R       +G  V   D     +   P    ++G +   
Sbjct: 116 RAIRYAIGRSTADAALRQSESRFRALFDNAGTGVVLSDARGAYIHCNPAFCAMVGYSDAE 175

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS- 503
           +      +    H +D D    + +  +  R    +   R    D    W+ + I  M  
Sbjct: 176 L--QTMTYRDLTHPDDIDTHSQMREDMMAGRIDSYELTKRYIRRDGAAVWVRLTITAMRE 233

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            S+ ++   + +  D+TE+K+  + +   A 
Sbjct: 234 GSDNELRFTVAVVEDVTEKKRLEDHMRLAAT 264


>gi|114048322|ref|YP_738872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113889764|gb|ABI43815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1009

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/563 (26%), Positives = 261/563 (46%), Gaps = 12/563 (2%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T       I G +   + G     L Y  +N
Sbjct: 451  IEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTEITGYSESEIRGQHIRML-YCDLN 509

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                +  + +      +G  Q E R R  +N+ + + + I  +++ +G   R + + +DI
Sbjct: 510  GHGFYTEMNNEIRE--KGEWQGEMRQRRKNNEEYVIWLTINTINDKDGQPYRRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K+S   I   A  D LTG+PNR+  L+ L   +  +  + N    +M +D+D +K++
Sbjct: 568  TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIRSADRNRN-HFALMFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L +  +   I   A  + +
Sbjct: 627  NDTLGHAMGDLLLIETANRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             I+ P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RISEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ +   E++  EAL++W HP+ G +S +EF
Sbjct: 747  QEYAKYRMRLIQDLRQAVVNKEFELHYQPIVTMGTGEVLKAEALLRWFHPERGQVSPAEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR    WR    +  I I +N +     D   L      
Sbjct: 807  IPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVE-IQISVNKSPIQFRDEGTLLHNWLE 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+ +   + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLQELDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 926  DIDYLKIDQSFTRHIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLNAGCDY 985

Query: 935  IQDSHVASPLGFNSILK--LLKE 955
             Q    + P+         LLKE
Sbjct: 986  GQGYLFSKPVSAAEFASQYLLKE 1008



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+       V A     + + +  E+  L +  S   VWDWDI  D +      A ILG 
Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGC 365

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R++  +    W++   +
Sbjct: 366 DIDMLNANSRQWMDSIVPEDRPKVLHSIEAHIRGETPQHKMEYRLKTLNRNIRWILDTGK 425

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 426 VVSRDTNNNALRMCGTYTDITEAKLIEESLKLSALVYD 463



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 16/320 (5%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286
           V  Y +I      +   L    + +      + + S+  ++              V  + 
Sbjct: 20  VFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMYEPGIIFDTRSVLLCVTGLF 79

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK--------GYERAV 338
           F G+  +  +     Y   +  +   + LA I+      +I+   +        G E   
Sbjct: 80  FGGLPTVVAVIITGAYRYSIGGAAMWVGLAVIISSGLIGVIWRQYRKSYLANISGREIFS 139

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
                 I++ +WF  L   +   +   I+ P L    +   +L    ++          Q
Sbjct: 140 FAFVVHIVMLLWFFLLPSHVAIPVLQKIMLPVLTIYPLATWLL--SRLLSRRFELERDEQ 197

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               D              +    + +  +   P +  +L  +   +      W    H 
Sbjct: 198 IRLQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHP 255

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D +      +  +  +    + + R  A D+   +  + +     +N  +L  I    D
Sbjct: 256 DDIEADIVKFELMLAGKIDNYEMDKRFIAKDSAIVYTHMTVAC-KRANHQVLLVIAGYLD 314

Query: 519 ITEQKKSLEGILCNAFQDNL 538
           +T Q  +L      A ++ L
Sbjct: 315 VTAQ--TLADREVLASREQL 332


>gi|114775460|ref|ZP_01451028.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
 gi|114553571|gb|EAU55952.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
          Length = 1123

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 153/601 (25%), Positives = 280/601 (46%), Gaps = 13/601 (2%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               L   +          L        +I  +L   +  Q +     +    V  +   +
Sbjct: 527  LGLLHLQLQPEGPTPQEFLRFCQQAAEIISEMLLREHIRQALEESENKHRQLVETTPMGI 586

Query: 419  WDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
              +          P   T+LG + +G + G     L +I  +DR+     L +       
Sbjct: 587  VIYS-NNKICYINPAAVTMLGASGAGEILGQ--AVLSFIVPDDREAASADLHTLQQGGYV 643

Query: 478  RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            +   E R +  D    W  +R  P+   +   ++ +    DI+ +K++ E +   ++ D 
Sbjct: 644  QPTEE-RFQRLDGSTFWGELRGVPVEYESQPAVQLL--IQDISSRKEAQEQLRLLSYSDE 700

Query: 538  LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            LTG+PNR+ + DR+     ++        +++ +D+D++K IND  G A GD VL ++  
Sbjct: 701  LTGLPNRRLYSDRVEQACSMARRRKR-PISLLFLDLDRFKLINDTRGHACGDMVLKTVAN 759

Query: 598  RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            R+ + L+  D  AR+ G+ F ++L  E    K    A  +  ++  PI +  +E+ + AS
Sbjct: 760  RLLQTLRVSDTAARMGGDEFAVLLP-ETEPDKALRVAGKLIAALNQPILIGNQELIIGAS 818

Query: 658  IGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVE 716
            IG AS+ +       +LK+A+ AMY+AK      H  S  + +    R+ +++ L LA  
Sbjct: 819  IGLASFPADGEDGETLLKHADSAMYYAKQNRLNIHCFSSVMEAVAQRRMQLEDSLRLAAG 878

Query: 717  NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            + +L L Y     L +  I G+E+L++W HP+ GNIS  EF+ +AEE  +I++I  + + 
Sbjct: 879  SGQLSLHYQSQHSLAEGTITGMESLMRWHHPELGNISPGEFIPLAEETGLIRSITAWAIT 938

Query: 777  RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              +R  + W +    P   I INI++ +L+   L   +  LI  +   P  I++  +E+ 
Sbjct: 939  EASRQALVWEEAGIRPE-RISINISAAELMQQNLASEILTLIRGSGAKPEWIEIEITETA 997

Query: 837  VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
             M  PE    ++  L + G+S+ +DDFGT  S L+YL  +P D +K + + +       +
Sbjct: 998  AMNQPETGIGIMRELVEGGVSIAIDDFGTGYSSLAYLKQLPADHLKIDIAFIRNLPDDAE 1057

Query: 895  RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               I+R+II MA  +  T++A+ +  +  +  L + GCD IQ   +  PL  +    +L 
Sbjct: 1058 DAVIVRTIIAMAHALGMTVVAEGVETQAQLDFLRQEGCDGIQGYLLGKPLPADETSTMLA 1117

Query: 955  E 955
             
Sbjct: 1118 N 1118



 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 9/135 (6%)

Query: 403 DGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--- 457
             ER  LA  +  + + +   D     +   P    + G    +        L   H   
Sbjct: 303 SAERHKLAAVIDHALESILVTDEEGRILLANPASNELFGYDEQTWQELSVLKLLMDHNAS 362

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                N+ +  +    +    +  E + R  D       + I   + +N    R   +  
Sbjct: 363 PTSLHNWLS--EQAGNHSSTGVVREMQGRRRDGSIFPCEVAIHAFTAANKR--RCSIVVR 418

Query: 518 DITEQKKSLEGILCN 532
           D+TE  +        
Sbjct: 419 DMTELTRRQWVQTTL 433


>gi|121998228|ref|YP_001003015.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589633|gb|ABM62213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 698

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 134/587 (22%), Positives = 261/587 (44%), Gaps = 13/587 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +    ++  L L    +    ++ +       + +    +        + D +   D
Sbjct: 105 GGRLWFEIVLTPLHLDDETLCCATLRDISRRKEMERRLQLSAK----VFTATRDGILITD 160

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +        I G A   + G     L   H +D D +R + +S   +++G    E
Sbjct: 161 ADSRILQVNDAFTRITGYAEEELLGRTPRVLQSGH-HDADFYRVMWESI--HQQGSWSGE 217

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              R          + I  ++ + G+++ +I + +D+TE K+S E +   A+ D LTG+ 
Sbjct: 218 LWDRTKYGTLQPKWVTISKVTGAYGEVINFIAVFSDLTELKRSQERLQFQAYHDALTGLA 277

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F DR+   L+ S   +  +  V+ ID+D +K +ND LG   GD +L  +  R+   
Sbjct: 278 NRLLFKDRMARALERSRQSEE-QLAVLFIDLDHFKDVNDSLGHTAGDRILRQVAHRLQAR 336

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L   D LARL G+ F I L    +       A  + + +  P    +R      SIG + 
Sbjct: 337 LGADDTLARLGGDEFSICLAEIRDHRDALACAETVHQELERPFQYSQRWFQCRCSIGISM 396

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720
           +  +  T  E+++NA+ A+++AK  G N    +          R+ + +++   ++  EL
Sbjct: 397 YPDNGETVEELIRNADSALHNAKAEGRNTTCFYAEELTERAQRRLDLAQEMRQGLQRGEL 456

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
              +   + L    +VG+EAL++W HP+ G ++   F+ +AEE+  + A+   +L +  +
Sbjct: 457 IPYFQHQVDLTTGRVVGIEALVRWHHPERGLLTPGAFIPVAEEVGTMAALGEDILLQACQ 516

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
              +W DQ       + +N+++    + ++ + ++  + +T      ++L  +ES +M  
Sbjct: 517 QGRTWLDQRREFG-RVAVNLSAAQFHNGDIEKTVRRTLEQTGLPAQCLELEITESTIMDL 575

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
             R+   L  LR+ G+SL++DDFGT  S L YL  +P + VK +   +     T +  +I
Sbjct: 576 SPRTLERLAALRRAGVSLSIDDFGTGYSSLLYLKRLPINRVKIDRGFIWDMGTTPESRSI 635

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + +I+ +A  +   ++A+ +       +L   GC   Q    A P  
Sbjct: 636 VDTILQLAHVLGLEVVAEGVETIQQRDQLIDAGCRVAQGFLWARPEP 682



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHG-PIRNWLPYIHIND---RDNFRTI 467
            S D +         V   P  A +LG      + G       P I  +     D  +++
Sbjct: 26  QSEDGMLVL-RDGHFVACNPAAARMLGWDDPQQLIGLRPEAISPQIQPDGASAADRVQSL 84

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L + V     R   E+   + +    W  I + P+   +  +        DI+ +K+   
Sbjct: 85  LRAAVSEGAQRF--EWIHTSPEGGRLWFEIVLTPLHLDDETL--CCATLRDISRRKEMER 140

Query: 528 GILCNA 533
            +  +A
Sbjct: 141 RLQLSA 146


>gi|73539725|ref|YP_294245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
 gi|72117138|gb|AAZ59401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
          Length = 835

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 150/567 (26%), Positives = 251/567 (44%), Gaps = 12/567 (2%)

Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A     + +        LA      + D V   D+        P    + G       G 
Sbjct: 265 ALRERDEALLESAYHLKLADRVFQATLDGVMVTDLNGVIERVNPAFTQLTGYTQAEAIGR 324

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L     +    F   L   +    G  + E   R  + + +   + I  +   +G 
Sbjct: 325 TPKMLSSGKQS--AAFYQSLWRQLRENGG-WKGEIWNRRKNGELYLEYLSISGIYGQHGR 381

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              Y  I +DIT+++   E +   A  D LT +PNR  F +RL       A     R  V
Sbjct: 382 CTHYAAIFSDITQRRMDEERLNHLAMHDALTSLPNRTLFSERLKQA-IARAKRAARRVAV 440

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M ID+D++K IND +G  VGD+ L  + RR+ E ++  D +ARL G+ F +I+    +  
Sbjct: 441 MFIDLDRFKLINDTMGHGVGDEALKVIARRLKEAIRESDTVARLGGDEFTVIIEDVEDIR 500

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A A+   +  PI+   R + VT SIG + +    I   ++L  A+ AMY AK  G
Sbjct: 501 HVAQIAQALLNVVGQPIDAHGRTVFVTPSIGISIYPDDGIDRKQLLMQADRAMYEAKEEG 560

Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N+   F         +R+ ++ +L  A+   E  L Y P+  L   +IV +EAL++W H
Sbjct: 561 KNNFRFFATQMTSSSMERITLESELRNALAAGEFRLHYQPVFDLRSGDIVSVEALLRWQH 620

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G ++   F+  AEE  +I  I  ++L    R    W D+       I +N++++   
Sbjct: 621 PTRGLLAPGAFITTAEESALIVPIGAWVLREACRQARIWMDEGFEFG-RIAVNLSARQCR 679

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +    +  ++S     P+R++L   ES+ M     +  LL  L + G+SL +DDFGT 
Sbjct: 680 HAQFLHDLTTILSDAGVPPTRLQLELVESMAMTGNGVTESLLDELAQRGVSLAIDDFGTG 739

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S   YL  +P D +K + S +     +R    ILR+++ MA ++  T++A+ +     +
Sbjct: 740 YSSFIYLQTLPVDMLKVDRSFLAAIDGRRRDGTILRAMVAMAHSLGLTVVAEGVEQAEQV 799

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
           + L  +GCD  Q   +A P+      +
Sbjct: 800 QFLREIGCDRGQGFFLARPVPAEQFRR 826


>gi|320354834|ref|YP_004196173.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Desulfobulbus propionicus DSM 2032]
 gi|320123336|gb|ADW18882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfobulbus propionicus DSM 2032]
          Length = 1093

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 156/580 (26%), Positives = 260/580 (44%), Gaps = 14/580 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILG 439
            G    +H LA            E    A      S + +   D     +   P    I G
Sbjct: 500  GDQERRHNLAVIRDITKRKQAEEELVFAAKVFDNSIEGIVVTDADATILQVNPAFTVITG 559

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                   G     L          F   + + +  R G+   E   R  + + +   + I
Sbjct: 560  YGPAEAIGQNPRMLKS--DKHLPAFYQAMWNQLA-REGQWAGELWNRRKNGEVYPEWLTI 616

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + N  G +  YIG+ +DITE K+  E +   A  D LT +PNR    DRL   L    
Sbjct: 617  SAIRNPLGRVTHYIGLFHDITELKRQQEALEHQAQHDALTNLPNRVLLNDRLAMALARMK 676

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               +++  ++ +D+D +K IND  G   GD++LV L+RR+ E L+  D LAR  G+ F I
Sbjct: 677  R-KSVKAALLFLDLDHFKNINDGFGHVAGDNLLVELSRRLKEQLRIGDTLARQGGDEFLI 735

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   ++   +   A+ +  S+  P +  + E  + ASIG          +  ++KNA++
Sbjct: 736  LLPEVDSVDDVGLVALRLLNSLRQPFHHQDIEYFIGASIGVTIAPDDGTDADTLIKNADM 795

Query: 680  AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK  G N+ + F             ++  L   +E  EL L + P++     +I G
Sbjct: 796  AMYRAKQLGRNNYQFFTPELDAQAHRRISLESKLRRGIEQGELELHFQPVVSSGSGKIHG 855

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EAL++W H +   I+  EF+ +AEE  +I  +  ++L   A    +W+D        + 
Sbjct: 856  AEALVRWRH-EGELIAPGEFIPLAEESGLILPLGEWVLRTAAGRARAWQDAGYRLG--LS 912

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++S+   D EL +   A+++ T   P R+    +ES++M   +R++ +LG LR IG  
Sbjct: 913  INLSSRQFTDQELVKLYLAVLADTGLEPGRLYFEITESLLMKEIDRAQHILGALRDIGGK 972

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
              LDDFGT  S L+YL  +P D +K + S +          AI+ +I+ +A+ +   I+A
Sbjct: 973  FYLDDFGTGYSSLAYLKRLPLDGLKIDRSFIRDIESDADSRAIVEAIVSLAQTLHLAIVA 1032

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +     +  L  MG   IQ    + P+       LL++
Sbjct: 1033 EGVETTEQLGFLQGMGPMLIQGYLASPPVPAERFDALLRQ 1072



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 3/168 (1%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +   ++   + + +L+ F   +        +  + +           +   V   D    
Sbjct: 363 VLAGVLLAGMGVGVLLLFFNARLAHEVQKRTAALAASERSFRAFFELASVGVAQVDARTG 422

Query: 427 R-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
           R +        I+G +   M    R++    +  D    R      V  R      E R 
Sbjct: 423 RFLRINRKYCDIVGYSEQEML--ERSFRDITYPEDILLDRQQRRDLVAGRIPEFTVEKRY 480

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              +    W++I + P+ + + +    + +  DIT++K++ E ++  A
Sbjct: 481 IHKNGSIVWVLISVSPLWSGDQERRHNLAVIRDITKRKQAEEELVFAA 528


>gi|288962778|ref|YP_003453072.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
 gi|288915044|dbj|BAI76528.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
          Length = 819

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 145/589 (24%), Positives = 272/589 (46%), Gaps = 13/589 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
             L   L LI+ +   T  + +   G  +  +    E +   +  +   +         +
Sbjct: 229 TGLSIALALILRMGLVTHSRALELAGVMTASLRLREEERQQLLTQAPLGIALVGADGVLM 288

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
              P  A   G     + G            D+      L++ +    G+L+ +  +   
Sbjct: 289 ECNPAFAAAAGRPPRDLLGTDARLRFG----DQAAV-FALEAALQGESGKLESDQPLVLG 343

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
             +     +  +P++ S+G +   +  A DI E++++ + I   A  D LT +PNR    
Sbjct: 344 -GRRSHFSLHFQPVT-SDGVLKFVLAFAEDIGEKRRAEQHIQYLAHFDALTSLPNRVLLY 401

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DR+   L  +  D   +  V+ ID+D++K IND LG + GD+VL S+ RR+   L+  D 
Sbjct: 402 DRIAQALREARRD-GTKVAVLFIDLDRFKIINDSLGHSFGDEVLRSVARRLQAGLRDSDT 460

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + RL G+ F I+L         A  A  +   +A P  +  +   VT SIG + +     
Sbjct: 461 VGRLGGDEFLIVLRRVTEPADAARVAEKVVAHLASPFPVGGQSFVVTPSIGISLYPDDAD 520

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHP 726
            + E+++ A++AMYHAK +G N              +R+ ++  L  A+   +L+LVY P
Sbjct: 521 DAEELIRCADIAMYHAKEQGRNGFRFVTREMGAKSRERMDLEGSLRRAIREGQLFLVYQP 580

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +  +   IVGLEALI+W HP+ G I    F+ +AEE  ++ A+  ++L      I  WR
Sbjct: 581 QVDTLTGRIVGLEALIRWRHPEEGLILPGRFLPVAEETGLVVAMGDWVLFEACAQIRRWR 640

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            +     + + +NI+     D +L   +   +     S   +++  +ES ++G+ E +  
Sbjct: 641 QRF-DLSVPVAVNISGAQFRDGQLPAKIAHALDVHGLSGPELEIEVTESTLIGDVEAAAA 699

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIP 904
            L  L++ G+ + LDDFGT  S LSYL  +P D +K + S +      +   ++ R+I+ 
Sbjct: 700 TLMALKERGVLIALDDFGTGYSSLSYLHRLPIDKLKIDRSFIRDLATGDSDASVPRAIVG 759

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +++  ++IA+ +  +  ++ L  + C+  Q    + P+  + + +LL
Sbjct: 760 LGRSLGLSVIAEGVETQEQLQLLRDLACESYQGFLFSRPIPADEVERLL 808


>gi|295400746|ref|ZP_06810723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977327|gb|EFG52928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 842

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 152/810 (18%), Positives = 332/810 (40%), Gaps = 37/810 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLG---Y 231
           L+        ++  T+   + + V+  +AI   + +  + S   +    +  +V      
Sbjct: 36  LYFVAEANQYLSLHTILEFLSVTVSLSIAIQGWMIFPQHLSRYRLWYSVVFLIVGIIDLL 95

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA 291
            ++ +  +  L+ + S             L+ + ++F  ++    +  ++     F    
Sbjct: 96  HTLSYKGMPGLIVVESSPQKATWFWVAARLTQACMLFFIIFFPDRQVQSRQKKTMFIFSV 155

Query: 292 CIAILFCMSFYYPMVTASI-------------ARITLASIVLYYTYFIIYHGMKGYERA- 337
              ++             I                 +  +    T +++    K   +  
Sbjct: 156 LYVLVISYIIIRYEQKLPILVVDGKGTTNLKNFLEYIIILFYASTAYMLLCSYKKQPKKA 215

Query: 338 -VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATG 394
            + LI A++ + +      +        + +     G   +  +  +   T+ +   A  
Sbjct: 216 HLDLILAFVFLILSEFLFTLYKNVYDLQNFLGHLYKGISYIYFMKGIYIATIKEPYDAQK 275

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +    +         G+ V   D  +       +   +LG     + G       
Sbjct: 276 KAEEELKKREKYLKTITSSLGEGVIVLDKDKKITFINQEAERLLGYQKNELLGK--ALFQ 333

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADNQFHWMIIRIRPMSNSNGDI 509
            IH    ++    L      +   L+  +RV        D     +     PM + NG++
Sbjct: 334 KIHCGS-EHQCDSLRECPLCQTAELKKAYRVEEDFFVRKDGTLLPIAYVSTPMIDDNGEV 392

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  +ITE+KK  E I   A+ D LT +PNR+  +++L   L  +    N R  ++
Sbjct: 393 IGSVIVFRNITERKKYDEKIKYQAYHDALTDLPNRRYLIEKLKNELKKAEEH-NSRIAIL 451

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K IND  G  +GD +L ++ +R+  ++     +ARL G+ F ++L   +    
Sbjct: 452 YLDLDNFKNINDSFGHVMGDLLLKNVAQRL-TMIHPDCFIARLGGDEFAVLLSGND--FN 508

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I + A    +S+  PI L  +E+ +T S+G + +         ++++A++AMY AK +G 
Sbjct: 509 IEEIACKTIQSLNQPIKLENKEVFITTSVGISVYPKDGDDEMTLIRHADMAMYDAKKKGK 568

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +     +       I++ L  A+E  E+ L Y PII  + + I+GLEAL +W+HP
Sbjct: 569 NQFSFYTAELEQQKIRKSKIEQLLRTAIERKEVSLCYQPIIDTVSKRIIGLEALARWNHP 628

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G+I ++EF+ +AEE   I ++   +L+   + +    +      +++ +N++ + L  
Sbjct: 629 EIGDIPANEFIAVAEENGQIVSLGKHILKTALQHLKQLHEIGFDY-LYVSVNLSLRQLRH 687

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +E    +  L+ K     S +++  +E + + + +     +  L+ IG+ + +DDFG   
Sbjct: 688 HEFTALISQLLQKNKLQASHLEIEITEHIALSDEKCVIHNIQELKDIGVRIAIDDFGVGY 747

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S + YL     DT+K + S +    +      +  ++I  A N+   ++A+ +     + 
Sbjct: 748 SSIGYLRTFSVDTLKIDKSFIFDVATNPNTAQLTSALITFAHNLNLQVVAEGVESAEQLC 807

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C+ IQ    + P+ F  ++ LL  
Sbjct: 808 FLEQHHCNKIQGYLFSPPVSFEQLVSLLHS 837


>gi|126176100|ref|YP_001052249.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125999305|gb|ABN63380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1497

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 264/563 (46%), Gaps = 12/563 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  +    + A   + + V   D+             I+G+ S  + G        +
Sbjct: 932  QRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQIIGIDSADLVGQSFTQFVQM 991

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D   + +   +         E  +  A  Q   + + +  M ++NG +  Y+ + 
Sbjct: 992  N----DGLASEIKQLLS-DSQSWTGERELINASQQPCPVWLNVSVMQSANGKVTHYVVVF 1046

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D++
Sbjct: 1047 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQAAQQTGE-KLALLFLDLDRF 1105

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + N+   I   A  
Sbjct: 1106 KHVNDSYGHSMGDALLVEASSRLQSCIASEHMLCRFGGDEFVILLRNANSIDDINHIAER 1165

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            + + I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + + 
Sbjct: 1166 LLEQIVAPFKLYGREFYISTSIGISIWPDYAVQPEAFIKNADLAMYHAKEEGRGNFQYYS 1225

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I +  +++++G+EALI+W HP  G I 
Sbjct: 1226 SERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRNDKLIGMEALIRWKHPLDGFIR 1285

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W  +       + +NI++      +  E 
Sbjct: 1286 PDIFIKVAEACGLIVDIDRWVLRQACVQGAHWAKRYGAT-FKLSVNISAVHFRQPDFIED 1344

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q ++ +T    + + L  +E V+M     ++  L RL+ +GI + +DDFGT  S L+YL
Sbjct: 1345 IQRILHETQMPTASLGLEITEGVLMKELHVAKDHLSRLKSLGIEVAIDDFGTGYSSLAYL 1404

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1405 RHFEVNTLKIDRSFLIDIATNKADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1464

Query: 932  CDYIQDSHVASPLGFNSILKLLK 954
            C  IQ  + A P+      + L+
Sbjct: 1465 CYIIQGYYFAKPMCVADFERYLE 1487



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + +      +Q +    +R   ++ GS   +W+W         
Sbjct: 782 LLLLFSIIALSLAWYRQRQINTFKQMNQALTESDDRLRQSLRGSDSDLWEWHKNTQAFHL 841

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DR+      DS +     R + E+R +  D 
Sbjct: 842 DNR-GAVLGTHANEIVVSLAELP--VHPQDREKALAQWDSMISGEIDRFEAEYRYQRKDG 898

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP++ +    +I R  GI +DIT Q++  + +   A
Sbjct: 899 NWGWLRVRGRPVTRNKHSNEIERVAGIYSDITVQRQLEDEVNLLA 943


>gi|53804274|ref|YP_114093.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758035|gb|AAU92326.1| sensory box protein/GGDEF domain protein [Methylococcus capsulatus
           str. Bath]
          Length = 819

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/820 (18%), Positives = 308/820 (37%), Gaps = 57/820 (6%)

Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232
            Y W P      V S  +       ++  L       Y   R   ++         L  +
Sbjct: 19  CYAWVPELLWLHVISDLVIAAAYCAISIAL------LYFAKRRRDVVFRSVFLLFGLFIL 72

Query: 233 ---SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL------------FMYLHWNR 277
                 F     +           +  +      + I+                 L  N+
Sbjct: 73  ACAGTHFMGAWTVWYPAYWTDGAIKVITAAVSFGTAILVWPLIPRALEIPSPRQLLELNQ 132

Query: 278 WHA-----------KVGYITFSGIACIAILFC-MSFYYPMVTASIARITLASIVLYYTYF 325
             A           ++  +  +   C+  +    +               +   +     
Sbjct: 133 HLASEVSERKQAEQRLRMLIDAEPECVKTVGADGTLLDMNRAGLQMIEAESIEEVRGKPI 192

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
                 +  ER         ++      L   I            L    V      G  
Sbjct: 193 TSLVAPQDVERFKAFNQR--VLAGESGILEFQIIGLKGGRRW---LESHAVPFASRPGAP 247

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                +      + +  +  R +     + + +   D            + I G  S  +
Sbjct: 248 DAVLAVTRDVTERKLAEEAVRLAATAFETSEAIMITDAAGIVQRVNSGYSAITGYTSDEI 307

Query: 446 HGPIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G    +L   H    +       +   +       + E   R  +     + + I+ + 
Sbjct: 308 VGTPSEFL---HPGGEEGKTSPRAILEALKG-TDCWKGELTARRKNGDVCPVWLSIKAVR 363

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N    +  Y+    DI+E+K++ + I   A+ D LTG+PNR+ FL+RL   +  S  + +
Sbjct: 364 NDEQILTHYVVTFVDISERKRAQQEIEQLAYFDPLTGLPNRRLFLERLNQAIGESCVNGS 423

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R +++ +D+D++K +ND  G  VGD +L  +  R+ E +    ++ARL G+ F I+L  
Sbjct: 424 -RCSLLFVDLDRFKHLNDARGHTVGDQLLRKVAERLSEGVGRGGMVARLGGDEFVILLNG 482

Query: 624 ENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +        +  D A  +R  +  P  L   +  VTASIG A +     ++ ++LK A+
Sbjct: 483 LDEEFESACRRTMDVAENLRVILQRPFVLSSGQHYVTASIGTAIYPFDTDSADDLLKAAD 542

Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N V ++  +       R+ ++ D+  A+E  E  L     +   +  IV
Sbjct: 543 MAMYEAKASGRNTVRAYASTMQAAAETRLTLERDMHAALERREFRLYLQSQVDG-NGRIV 601

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W+HP  G +   +F+ +AEE  +I  I  ++ E++  + +      +   + +
Sbjct: 602 GAEALLRWEHPTEGILLPDKFIALAEETGLILPIGEWVFEQVCHENVRLSQAGHR--LSL 659

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+ +     +  + +Q ++ +T  +P  +    +E +++ + + +   +  L ++GI
Sbjct: 660 SVNISPRRFQQADFLDHVQRILKRTGANPHDLIFEITEGLLVSDFDDAIAKMSFLERLGI 719

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             ++DDFGT  S L+YL  +P   +K   + +         +A++++I+ MA ++    +
Sbjct: 720 RFSVDDFGTGYSSLAYLKRLPLSELKIAQTFVNDLPDDPSDVALVQTILSMAYHLNLETV 779

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +     ++ L   GC   Q  + + PL      + L 
Sbjct: 780 AEGVETRAQLEFLKARGCTRFQGYYFSPPLPATEFFEKLA 819


>gi|119899670|ref|YP_934883.1| signaling protein [Azoarcus sp. BH72]
 gi|119672083|emb|CAL95997.1| hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 952

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 267/566 (47%), Gaps = 14/566 (2%)

Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-P 454
            Q   ++  R + AV   + D V   D+    V        + G +   + G    +L  
Sbjct: 391 EQRQATELLRLNSAVIESTHDGVVLTDLDGAIVAVNRAFTEVTGYSRDEVVGQNPRFLQS 450

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  DR  + ++  +      G  Q E   R  + +     + +  + N  G +  Y+G
Sbjct: 451 GRH--DRGFYLSMWAALKE--AGHWQGELWNRRKNGELFPEWLTLNAVRNEVGHVTHYVG 506

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI++ K++ + +   A  D LT +PNR   L RL   LD +      R  VM +D+D
Sbjct: 507 VFTDISKLKQTEDRLDYLAHHDPLTDLPNRLLVLSRLEHALDGAQRR-GCRVAVMFLDLD 565

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG A GD++L ++  R+   L+  D L RL G+ F ++L         A  A
Sbjct: 566 RFKTVNDSLGHAAGDELLRAVAARLRGALREEDTLGRLGGDEFMVLLEHVEAPADAAVVA 625

Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             + + +A P  L    E+ + ASIG + +         +++NA+ AMY AK +G N   
Sbjct: 626 KNLVEVLAAPFALSNGHEVFIRASIGISFYPDDGDDFMTLVRNADAAMYRAKAQGRNTYG 685

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +        ++R+ ++  L  A+E+ E  + Y P++ + D  ++G EAL++W       
Sbjct: 686 FYTEDLIRSATERLALETRLRRALEHDEFVVYYQPVLGVKDGRLLGAEALVRWKPQGEPM 745

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S + F+ +AEE  +I A+  ++L    R +  W D        + +N++++     ++ 
Sbjct: 746 VSPAAFIPVAEETGLIVALGEWVLRDACRQVREWIDAGYAFG-QVAVNLSAEQFRRQDVS 804

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++++T    ++++L  +ES ++   E +  LL RL++ G+ L +DDFGT  S L+
Sbjct: 805 AMLATVLAETGLPATQLELEITESSLLEAGEHAVGLLERLKQQGVGLAIDDFGTGYSSLA 864

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL     D +K + S +         +AI  +I+ MA+ ++  + A+ + GE  ++ L  
Sbjct: 865 YLKRFSIDKLKIDRSFVQDIADDSNDLAIASAIVAMARALDMAVQAEGVEGEAQLELLRG 924

Query: 930 MGCDYIQDSHVASPLGFNSIL-KLLK 954
           +GC   Q    + PL  +    + L+
Sbjct: 925 LGCGSYQGYLCSPPLPADEFEARFLR 950



 Score = 91.2 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-----VTTTPDIATILGLASGSMH 446
                   + +  +R    +  S  +  ++ + R          + ++  + G +     
Sbjct: 262 ELVRERAALRTMTQRLEEVLDCSPSV--NYTLTRGEEGWVGTWMSHNLTRMTGFSVAEAL 319

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W   +H +D +     + +      G   +E+R+R AD    W+   +R + +  
Sbjct: 320 AQ-GWWARTVHPDDLERASRAVRAV--EEDGHYVHEYRIRCADGGVRWIRDELRAVRDEG 376

Query: 507 GDILRYIGIANDITEQKKSLEGIL-----CNAFQDN--LTGI 541
           G ++R  G+  DITEQ+++ E +        +  D   LT +
Sbjct: 377 GRVVRVAGVWIDITEQRQATELLRLNSAVIESTHDGVVLTDL 418


>gi|114320714|ref|YP_742397.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227108|gb|ABI56907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1017

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/582 (25%), Positives = 283/582 (48%), Gaps = 17/582 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATI 437
           +  F  ++  +     ++      ER   A+  + + +   D+       V   P    I
Sbjct: 423 ITHFVAVREDITESKRAESAIRLRER---ALESTANGILISDLRLRDNPIVYVNPAFERI 479

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            G     + G    +L     +D+D      + S +  RR       R    D    W  
Sbjct: 480 TGYPRDEVVGRNGRFLVR---DDKDQPGLEEIRSALRSRREA-HAVIRNYRKDGTLFWNE 535

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + + P+   +G +   + + ND+TE+K+    +      D LTG+PNR   +DRL   L 
Sbjct: 536 LFVAPVREDDGAVHYMVSVINDVTERKRYQAELEQRTHYDALTGLPNRNLLVDRLHQALL 595

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +         ++ +D+D+++ IN+ LG A GD +L ++  R+   L+  D +AR+ G+ 
Sbjct: 596 YARRSGR-HVALLNVDLDRFQIINESLGHAAGDQLLRTVADRLTAALRGFDTVARMGGDE 654

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L    N+      A  +++++A  I++  +++ ++ S+G+  +        ++++ 
Sbjct: 655 FNIVLTELRNTRDAELLAGELQEALAPSISVTGQDVFLSVSVGYTVFPDDGDGPEDLIRR 714

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A +AM+ AK +GG  +  +  R    + +R+ ++ DL  A+E  EL L   P + L    
Sbjct: 715 ASVAMHEAKRQGGGVIIRYSERSEPRQINRLTLESDLQRAIERGELRLHLQPQVDLDTGA 774

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EAL++W+HP+ G +S  +F+ +AEE+ +I  +  ++LE +A  +  W+ Q   P +
Sbjct: 775 MSGAEALLRWEHPRHGLVSPMQFIPLAEEVGLIIPMGRWVLETVATQLAHWQQQGL-PVV 833

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +NI+++  L  EL E ++ ++     +PS ++L  +ES++  NPE +  +L  L+ +
Sbjct: 834 PVALNISARQFLHAELVEDVRQILEGHGVAPSLLELELTESLMARNPEVAVQILRELKAM 893

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETT 912
           G+ L LDDFGT  S L++L   P DT+K + S +    E     AI+ + I MA ++   
Sbjct: 894 GLRLALDDFGTGYSSLAHLKRFPIDTLKIDQSFVRHVNEDGDDAAIINATIRMAHSLGLN 953

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++A+ +  E  ++ L R  CDY Q    + PL        L 
Sbjct: 954 VVAEGVEREDQLEHLKRQRCDYAQGYFFSRPLSLERFAARLA 995



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 10/192 (5%)

Query: 340 LIPAWILIFIWFIGLWMAITKRL---DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
                 L  +   G    +   L     D          VL  +    +           
Sbjct: 254 FSAICALPLVAGRGGEGPVFGVLVIHSRDPSALDAAAVRVLDNLAANLSHGVWAQRLRGR 313

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + + S+  + + A   S   V   D         P    + G A   + G     L   
Sbjct: 314 QRRMRSELRKHARATENSPVSVLITDAEARIEYVNPSFTRLTGYAPEEVIGRDPRMLGSG 373

Query: 457 H--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           H        +R + ++    R    Q   + R  D Q  W    I P+  ++G I  ++ 
Sbjct: 374 HTPPE---VYRELWETVRAGRT--WQGTVQNRRKDGQLIWERQVISPLRAADGTITHFVA 428

Query: 515 IANDITEQKKSL 526
           +  DITE K++ 
Sbjct: 429 VREDITESKRAE 440


>gi|229142041|ref|ZP_04270566.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
 gi|228641330|gb|EEK97636.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
          Length = 891

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 173/870 (19%), Positives = 351/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 34  SYILYFSNLKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 88

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 89  YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 142

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  F    +NL    L +        L S+LI++      Y +
Sbjct: 143 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAY 202

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 203 IKYFTPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISV 262

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 263 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 322

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 323 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 382

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 383 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 437

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM
Sbjct: 438 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 496

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 497 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 556

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 557 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 616

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 617 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 676

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   
Sbjct: 677 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 735

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L E +  +I+     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 736 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 795

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 796 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 855

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  +  +K L++
Sbjct: 856 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 885


>gi|313683571|ref|YP_004061309.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156431|gb|ADR35109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 974

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/599 (25%), Positives = 258/599 (43%), Gaps = 12/599 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L N +    L    ++ V        +         Q +          V    D++W 
Sbjct: 381 ILVNVVSITFLDHPYMMAVYRDITEQKKADQTLRERQQELAKQTAFLRTLVSTIPDLIWL 440

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +   P    +       + G       ++       FR   ++ +        
Sbjct: 441 KDTEGTYLACNPMFERLYNAKESEIIGKND--FDFVDPELAQFFRENDNAAMRLGASHHN 498

Query: 481 YEFRVRAADNQFHWMIIRI-RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            EF ++ AD  +      I  PM + +G ++  +G+A DI+E+KK  E +   A  D LT
Sbjct: 499 EEF-LQFADGSYAGTFDTIKTPMKDPSGKVIGILGVARDISERKKHEEQLEILANFDPLT 557

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR      L   +D +  D   +  +++ D+D++K IND  G + GD++L  ++ R 
Sbjct: 558 GLANRGLLHAHLQNSIDKANRD-KTQLALLMFDLDRFKDINDSYGHSAGDELLQMVSERF 616

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASI 658
              L+  D++ARL G+ F ++L +          A  M  ++A    L     I V AS 
Sbjct: 617 TSRLREGDLIARLGGDEFAVVLENITRPEDAGRLAQEMLGTLAEAYRLSAGALIHVGASA 676

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVE 716
           G   +      ++ +L++A+ A+Y AK  G      +      S R  I+ +  L  A+ 
Sbjct: 677 GIVLFPDHGSDAAILLQHADAALYKAKAEGRGVYHYYTDELTDSARQRIECETRLRRAIL 736

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N E  + Y P + +    IVG EALI+W+ P  G +S +EF+ IAEE+ +I  I  ++L 
Sbjct: 737 NQEFEVYYQPQVHIQTGRIVGAEALIRWNSPVKGLVSPAEFIPIAEEIGLIGEIGEWVLN 796

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R    W D  +   + + +N+++  +    +   ++  + K+ Y   R++L  +ES 
Sbjct: 797 ETCRQGKIWLDMGHR--LTLAVNVSAHQVRHQNVPHMVEEALKKSGYPADRLELELTESA 854

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
           +M   E +  +L  LR  GI L +DDFGT  S LSYL   P D +K + S +        
Sbjct: 855 LMQREEETVEMLHSLRAHGIRLAIDDFGTGYSSLSYLKRFPIDVLKIDKSFVDDIPYERD 914

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +AI+ +II M + +   ++A+       I  L   GC   Q    + PL      KLL
Sbjct: 915 DMAIVSAIIAMGQALGFQVLAEGTERIEQIDFLREKGCTMYQGYFKSQPLRATEFEKLL 973


>gi|307823577|ref|ZP_07653806.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735562|gb|EFO06410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 882

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 140/549 (25%), Positives = 253/549 (46%), Gaps = 13/549 (2%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D +   D     +        I G ++  + G   N L     +D+  + ++ +S    R
Sbjct: 336 DAMLVTDANNVILKVNQAFTRITGYSAEEVIGKTPNLLSS-GQHDKTFYSSMWESI--NR 392

Query: 476 RGRLQYEFRVRAADNQFH--WMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILCN 532
               Q E   R  + +    W+II      +   + +  Y+   +DIT +K + E I   
Sbjct: 393 TDAWQGEIWNRRKNGEMFPEWLIITAVKEPDEKNEHVNNYVASFSDITSRKAAEEEIKQL 452

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LT +PNR+   +RL   +D+   D   R  ++++D+D++K +ND LG   GD++L
Sbjct: 453 AFYDPLTQLPNRRLLQERLKHSIDVERRDGK-RLALLMLDLDRFKAVNDSLGHLAGDELL 511

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LERE 651
             +  RI   L+  D++ARL G+ F ++L    ++   A  A  +   +  P  L    +
Sbjct: 512 QQVAVRISARLRDVDMVARLGGDEFVVLLEDIAHAEDAARVAAEIIFVLGKPFQLTQSSD 571

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKE 709
           + + ASIG + +     +   ++ +A+ A+Y AK +G      F         +R+ ++ 
Sbjct: 572 VQIGASIGISLYPEHGASYEMLMDHADAALYQAKDQGRGCYAYFSEDQTLAARERIALET 631

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+E  EL + Y P + +    IVG EAL++W  P    I    F+ IAEE  +I  
Sbjct: 632 RLRRAIEQGELRVFYQPQMDIESGRIVGAEALVRWQDPIEELIPPLRFIPIAEETGLILE 691

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R    W D    PP+ + +N++ +     ++   +   +++T +    ++
Sbjct: 692 IGAWVLRETCRQGRLWLDAGL-PPLTLAVNVSPQQFRRGDISALVATALNETGFPAEYLE 750

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES ++ N +    LL +LR  GI L +DDFGT  S L+YL + P D +K + S + 
Sbjct: 751 LEMTESGLLENQDNVMALLNKLRSQGIRLAIDDFGTGFSSLAYLKHFPLDVLKIDKSFID 810

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                +  + I  +II M   +   ++A+ +     +  L    CD  Q    + P+   
Sbjct: 811 DIPNLQDDMEIAATIIAMGHILGFKVLAEGVETPEQLAFLREKKCDSYQGYIKSPPVPAE 870

Query: 948 SILKLLKER 956
           +   LL+E+
Sbjct: 871 AFALLLREQ 879



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 9/221 (4%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
             T+   +      +  + +    + +               +       L+  ++ +  
Sbjct: 112 ILTFLTQWLAFHILDTDMRMAKVVLAVQSGVPLNQAKEQADQEMSGAMKVLIETMLSMFD 171

Query: 381 LIGFTVIQ---HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPD 433
            +    +Q    V+      Q      +R          +V+ +    D           
Sbjct: 172 ALSSRTMQLAKEVVERQKAEQASQDALDRLQKIASQVPGLVFQFQLFPDGSSRIPYANEA 231

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           I ++  ++   +       L  +H +D +NF+T             + E+R++  D    
Sbjct: 232 IRSLYRVSPEEVSEDAAKVLAALHPDDLENFKTSFK-VSARDLTPWRQEYRLKFDDAPVC 290

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           W+     P   ++G +L + G   DIT+ K++   +   A 
Sbjct: 291 WLFGNALPQRQADGSVL-WHGFITDITKHKQTEVELRIAAT 330


>gi|117928688|ref|YP_873239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidothermus cellulolyticus 11B]
 gi|117649151|gb|ABK53253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidothermus cellulolyticus 11B]
          Length = 949

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 159/713 (22%), Positives = 292/713 (40%), Gaps = 25/713 (3%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             L ++   + + +     +F    L    W  +      +    + +   +        
Sbjct: 214 PFLALFLIGAGVIVCELGDLFSLRPLALGEWSPRHPSYLLAVAGRLVLGLAVLSRTAERA 273

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
             +       I +      +            L    +LI    + + +     +   ++
Sbjct: 274 DLVQLRRREYIAVLTPVLPV------------LAVGSLLIAAAVMRVSLRPATLILLGVL 321

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              L+   +   +                +  + +  +     V  S DI+   D     
Sbjct: 322 GILLLLAWLAARLDQLLLSRTLEHRVVERTLALRTHAKWFRSLVQNSSDIITIVDPSGVI 381

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
              TP    +LG    +M G    ++  +   D      IL   V   R     EF +R 
Sbjct: 382 RYQTPSATRVLGYDPNAMVGQ--RFVSLVAPADVHRLEAILLDAVLRPRSTHTIEFAMRH 439

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           A   +      I  + + + DI   +    D++E+K+    +   AF D LTG+ NR  F
Sbjct: 440 AAGHWRETETVITSLVD-DHDIRGLVLNTRDVSERKELERQLTRQAFSDPLTGLANRALF 498

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +R+   L   +        V+ +D+D +K +ND  G AVGD +L  +  R+   ++  D
Sbjct: 499 ANRVEHALSERSRQPG-EVAVLFLDLDGFKGVNDAQGHAVGDHLLTLVADRLRRCVRPSD 557

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL G+ F I+++         D A  +++++A P  L  RE+T+ ASIG A      
Sbjct: 558 TVARLGGDEFAILVVGPQAEAHGVDVAERVQRALAEPFLLSGREVTLAASIGIAVTDDGT 617

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725
            T  ++L+NA+LAMY AK         FR     +   RV  + DL  A+   EL L Y 
Sbjct: 618 ETVDQLLRNADLAMYRAKSSRKGTYVRFRTEMHDALLARVQTETDLRHALSRRELVLHYQ 677

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L   ++VG+EALI+W HP  G I   +F+ +AEE  ++++I  + +    R    W
Sbjct: 678 PTVNLRTGQVVGVEALIRWYHPTRGLIQPMDFIGMAEETGLVESIGAWAIRECCRQGARW 737

Query: 786 RD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +          + +N++ + L    L + ++  +++T   P  + +  +E++++   E +
Sbjct: 738 QRYAQPGGVFHVAVNVSGRQL-HPRLPDIVRTALTETGMPPGALVIEVTENILVKRSEEA 796

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-----AIL 899
             +L +L+  G+ + +DDFGT  S LSYL   P D +K + S +   T++        ++
Sbjct: 797 IAVLRQLKSFGVRVAIDDFGTGYSSLSYLARFPVDVLKIDKSFVEQITDRNSGTEGTELV 856

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           R+I+ + + +    +A+ I        L  M CDY Q    + PL    I  L
Sbjct: 857 RTILHLGRALRLGTVAEGIETREQYAALLAMSCDYGQGYLFSRPLPAEGIDTL 909


>gi|264677649|ref|YP_003277555.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262208161|gb|ACY32259.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 822

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 267/593 (45%), Gaps = 17/593 (2%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           Q  L  GL+++V  +    +            + ++ ER  + +   GD V   D     
Sbjct: 236 QSGLQAGLLMLVTDVTDRKLAET--------SLHNEKERLRITLNSIGDAVIATDAEGRV 287

Query: 428 VTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRV 485
               P    + G     ++  PI   +P     D    +  +   +   R   +    ++
Sbjct: 288 NFLNPIAEAMTGWYGRRAIGVPIEQVMPLRDSFDGHVLQNPIYLALKEQRIVGMALNSQI 347

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D +   +     P+ +  G +   I + +D++E +     +   A  D LT +PNR 
Sbjct: 348 ACRDGRVLEVEDSAAPIWDQAGKLTGAIIVFHDVSEARAMALKMTHLAHHDPLTNLPNRM 407

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              DR +  L  +  +   +  + ++D+D +K IND +G ++GD +L+ L +R+ + ++ 
Sbjct: 408 LLQDRTSQALQQAGRNGG-QVALFILDLDHFKTINDSVGHSIGDQLLLQLAKRLQQFVRN 466

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D ++R  G+ F I++    +  +++     + ++ A P  L      ++ SIG + +  
Sbjct: 467 GDTISRQGGDEFIILIPEIRHVDEVSQLGERLLEACAEPFLLDGVRYDLSMSIGISLYPD 526

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
                  + ++A+ AMY AK  G      F          R M++  + +AV   +  + 
Sbjct: 527 DADNQEALYRHADAAMYQAKQEGRGRFRFFSQEIEHTLYARHMLERHMRVAVAEGDFEVH 586

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P I L  +++VG EAL++W       IS ++F+ +AEE  +I  +   +L +  ++  
Sbjct: 587 YQPKIDLASQQVVGAEALVRWRRQDGSLISPAQFIPLAEETGLIVPLGRSVLLKACQEGR 646

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W +Q  +  I I +N+++  L  +     +  +I +T   P  ++L  +E V+  + + 
Sbjct: 647 RWHEQGYL--IHIAVNVSAVQLAKSNFTAMVSEIIEQTGIMPGYLELEITEGVLAKDVKN 704

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +  ++  L KIG+S+++DDFGT  S LSYL   P D +K + S        +   AI+ +
Sbjct: 705 TFAIINELHKIGVSISIDDFGTGYSSLSYLKQFPIDVLKIDQSFTREILTEKSSAAIVAA 764

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           II MA  ++  ++A+ +  +   + L +MGC  +Q    + PL    + + L+
Sbjct: 765 IINMAHGLDLRLVAEGVETQAQAELLQQMGCTVMQGYLYSRPLMPERLTEYLQ 817


>gi|307823946|ref|ZP_07654174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735240|gb|EFO06089.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 760

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 148/551 (26%), Positives = 231/551 (41%), Gaps = 12/551 (2%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L     G+ +   D     VT  P    + G +     G     L   H N  + F  I+
Sbjct: 213 LVYQAIGEAIMVADADNRIVTVNPAFTELTGYSLQEAVGQSTTLLKSGHQN--EAFYQIM 270

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              +    G  Q E   R    + +   + I  + +    +   +   +DIT+QK + + 
Sbjct: 271 WHALET-TGHWQGEIWNRRKSGEIYLEWLTINTVYDDQNKVRHRVATFSDITDQKHAEQT 329

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D+LTG+PNR  F +RL   +  S          + +D+D +K +ND LG   G
Sbjct: 330 IWQQANFDSLTGLPNRHLFYERLEQEMKKSRRVGLPLAL-LFLDLDHFKDVNDTLGHCKG 388

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  + +R+   ++  D +ARL G+ F IIL        I   A  +   +  P  L 
Sbjct: 389 DLLLKEMAQRLLNCVRSTDTVARLGGDEFTIILAELQEQDSIERLAQDILCQLTKPFELA 448

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVM 706
                V+ SIG   +         ++KNA+ AMY AK +G N    F +S       R+ 
Sbjct: 449 GEIAYVSVSIGITLYPEDTDDIDVLIKNADQAMYAAKDQGRNCRHYFTISMQEAALTRMR 508

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A+   + +L Y PI+ L    I   EALI+W HP  G IS ++F+ +AE   M
Sbjct: 509 LINDLRNALVERQFWLAYQPIVELTTGFIHKAEALIRWQHPTRGLISPADFIPVAETTGM 568

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCEGMQALISKTLYS 824
           I  I  ++    A+    WR + +     I IN +       DN      +  + +    
Sbjct: 569 IIDIGEWVFREAAQQAAQWRTKHHNE-FQISINKSPVQFQKEDNGHLAWFEH-LRELGLP 626

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E ++M         L   R  GI ++LDDFGT  S LSYL     D +K +
Sbjct: 627 GESVVIEITEGLLMDAGALITGQLLAFRDAGIQVSLDDFGTGYSSLSYLKKFDIDYLKID 686

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S     +     +A+  +II MA  +   +IA+ I  +     L   GCDY Q    + 
Sbjct: 687 QSFTRNLSPDANDLALCEAIIVMAHKLGIKVIAEGIETQEQCDLLMAAGCDYGQGYLFSK 746

Query: 943 PLGFNSILKLL 953
           P+      KLL
Sbjct: 747 PVAAGEFEKLL 757


>gi|70729435|ref|YP_259173.1| sensory box protein [Pseudomonas fluorescens Pf-5]
 gi|68343734|gb|AAY91340.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas fluorescens
            Pf-5]
          Length = 1114

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 146/587 (24%), Positives = 271/587 (46%), Gaps = 26/587 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             T ++ +         + +  E+ + A   S D +   +    R +        + G  +
Sbjct: 538  VTNLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYLEVNDGFCRLTGHRN 597

Query: 443  GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + G        W         +   + L + +  +      E   R    +   + + 
Sbjct: 598  DEVIGRTMYQIGIWAE-------EAQLSTLLAELQIKGRVHHLEMLGRNKRGEILTLEVS 650

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + P++    +    +  A D++  K +   I   A+ D LT +PNR   +DRL+  + L 
Sbjct: 651  VEPITL--NETPCLLMTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALL 708

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F 
Sbjct: 709  KRH-NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRMEDTVARLGGDEFV 767

Query: 619  IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            ++L     +      ++   A  +R+ ++ P+ L  + + VT SIG A       T +++
Sbjct: 768  VLLSGLEGTRNEVSEQVRQLADTLRELLSEPMFLDGQRLQVTPSIGVALIPDHGSTPTDL 827

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            LK A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   E  + + P +   
Sbjct: 828  LKRADIALYRAKDSGRNTTQMFHNTMQKAASERLRMETDLRLALSRGEFSVHFQPQVDAR 887

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            D  IVG EAL++W HP+ G  S +EF+ + E+  +I  +  ++L+          DQ  +
Sbjct: 888  DNRIVGAEALVRWQHPELGAQSPTEFIKVLEDSGLILEVGTWILDEACLAFSQLIDQKLV 947

Query: 792  PP--IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P    + +NI+ +     +  E ++  +       S +KL  +E +V+ N E +   + 
Sbjct: 948  DPQHFSLCVNISPRQFRQTDFVERVEHSLHAYALPSSLLKLEITEGIVIQNLEDTINKMR 1007

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            RL+K+G+S  +DDFGT  S L+YL  +P DT+K + S +  +        I+R+I+ MA+
Sbjct: 1008 RLKKLGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVRDATHDPNDAEIIRAIVAMAR 1067

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++   +IA+ +     ++ L  + C   Q    + PL  +   KLL+
Sbjct: 1068 SLNLKVIAEGVETPQQLEFLQGLECHLYQGFLHSRPLPLSEFKKLLE 1114



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/497 (15%), Positives = 161/497 (32%), Gaps = 45/497 (9%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
                  + A   ++ + I+    V       +L  F        +    Q +    ER 
Sbjct: 251 AASLEVQFRASNGQIHDGILSAQKVELEGKAYLLSTFLDTSERKRS---EQALKDSQERL 307

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            LA+  +    WDW I    +  +   A + GL     H     +   +   +R++ R  
Sbjct: 308 DLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLEPIPFHESFDAFFEGVPTEERNSMRDA 367

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S      G  Q  +RV+  D    ++  R R   +  G  LR  G   DITEQ +  +
Sbjct: 368 YRSLREGPAGNYQLTYRVQLEDGSSRYLESRARLYRDEQGSPLRMAGTLLDITEQVEREQ 427

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            ++ +                ++  ++  +S         V +++  ++ +IN       
Sbjct: 428 RLITS---------------EEKFASLFQVSPD----PICVTLLETGQFIEINSSFTQTF 468

Query: 588 G---DDVLVSLTRRIGELLKFPDILARLSG-------NRFGIILISENNSLKIADFAIAM 637
           G   D+VL     +IG        L R+         N   +++  +N        +  +
Sbjct: 469 GWTLDEVLNRSAEQIGLWEDAAPRLRRIEQVIREQALNNVAVVVHHKNGQPLTCIISSRL 528

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                 P  +             A+  +S+   ++   ++  A+   +   G ++E    
Sbjct: 529 ITVDKQPCIVTNLRDITQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYLEVNDG 588

Query: 698 SSFRSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               +     +       +      E  L        +   +  LE L +    +   + 
Sbjct: 589 FCRLTGHRNDEVIGRTMYQIGIWAEEAQLSTLLAELQIKGRVHHLEMLGRNKRGEILTLE 648

Query: 754 SSEFMLIAEELC--MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            S   +   E    ++ A ++ +L+         R  A   P+    N+ ++ LL + L 
Sbjct: 649 VSVEPITLNETPCLLMTARDVSLLKNA---QAQIRHLAYHDPLT---NLPNRALLMDRLS 702

Query: 812 EGMQALISKTLYSPSRI 828
           + + AL+ +     + +
Sbjct: 703 QQI-ALLKRHNLRGALL 718



 Score = 96.9 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 2/139 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H +      Q   +  +  + A+ G+    W WDI   +++ +     + G         
Sbjct: 37  HAVDPRESEQSWENAPQLLA-ALNGARLGAWYWDIESGQISWSRGTQALFGFDPRQPLPE 95

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              +L  + I DR        S +           R+R  D   HW+ I    + + +G 
Sbjct: 96  NLEYLDLLPIEDRARTIRAFHSVLAGAPLEHAMHHRIRWPDGSLHWLEINGSVLPDKHGK 155

Query: 509 ILRYIGIANDITEQKKSLE 527
             R IG+  +IT Q++  E
Sbjct: 156 P-RMIGVIREITHQRQREE 173


>gi|71281214|ref|YP_268031.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71146954|gb|AAZ27427.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 685

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 141/576 (24%), Positives = 260/576 (45%), Gaps = 11/576 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                I+ +      +  +    ER   +   +    WDWDI  + +  T +   I G+ 
Sbjct: 108 FTVCSIRLLSEQELVASTMQKLHERLEFSQSLAHVGTWDWDITNETLAWTDETYRIFGVK 167

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                     +L YIH +DR      ++  +         + RV     +   ++ + + 
Sbjct: 168 PQEFKATYEAFLFYIHADDRQAVIDAVNDAINNDS-SYSIKHRVIRPSGEIREVLEKGQV 226

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + + NG   R IG   DITE  +S E +   A  D  T +PNR      +   +  +  +
Sbjct: 227 LRDENGKASRIIGAVLDITELNQSKEKLEKLAHYDEKTQLPNRVLCRKEIEIRISHALLN 286

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +  +  ++ ID+D +K IND  G   GD+ L  +++++  ++     LA L G+ F II 
Sbjct: 287 NK-KFAILFIDLDHFKNINDTQGHLAGDEFLHEMSQKLLTIIPKGMFLAILGGDEFIIIT 345

Query: 622 ISENNSLKIADFAIAMRKSIAMPIN----LLEREITVTASIGFASWTSSKITSSEMLKNA 677
              ++  +I +    + K + + I          I +TASIG A + +     + +L +A
Sbjct: 346 DYSDDEEEIKNKVTRLAKQLILLIPTKKSYENFSIDITASIGIALYPNHGNNFTSLLSSA 405

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY  K+ G N+   +     +     + +  D+   ++  +  + Y     L  +E+
Sbjct: 406 DNAMYQVKNTGRNNYAMYHPDIEQKRLRELQLISDMRTGLKKGQFTVHYQAKQSLKTDEL 465

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EALI+W H   GNI   EF+ +AE   +I  I  F+LE+    I  W+   +   + 
Sbjct: 466 IGCEALIRWQHHTLGNIPPLEFISLAESSGLIIPIGKFVLEQSCLFIKQWQAH-SDKSLV 524

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++  L D    E +  +I+    S   I+L  +ES++M N E +   L  L++IG
Sbjct: 525 VSVNVSALQLKDPLFKEEVLQVINSAGISGHNIELELTESLLMENIEATIQTLHDLKEIG 584

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
           +S+++DDFGT  S LSYL  +P DT+K + S +   +       I+ + I +A  ++   
Sbjct: 585 VSISIDDFGTGYSSLSYLQKLPVDTLKIDKSFIDSLSSSDEDTWIVINTISLASGLKLKT 644

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +A+ +  +     L  +GCD +Q    + P+  N  
Sbjct: 645 VAEGVETQEQKSILADLGCDILQGYLYSKPIPKNEF 680


>gi|152999858|ref|YP_001365539.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151364476|gb|ABS07476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1015

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 263/568 (46%), Gaps = 10/568 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + + G     +       L Y  +N
Sbjct: 452  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + +      +G+ Q E   R  + + + + + I  +++  G   R + + +DI
Sbjct: 511  GRDFYTQMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L++ +  +  + N    ++ +D+D +K++
Sbjct: 569  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S ++   I   A  + +
Sbjct: 628  NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMDDHKGIERVAENILR 687

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 688  RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + G +S +EF
Sbjct: 748  QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WR +  +  I I +N +     D   L      
Sbjct: 808  IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 867  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 927  DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986

Query: 935  IQDSHVASPLGFNSILKLLKERFPLVKN 962
             Q    + P+      +   +  PLV  
Sbjct: 987  GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            L+       + +     Q + +  E+  L +  S   VWDWDI  DR+      A ILG
Sbjct: 306 ALLVIAGYLDITSQALADQEVLASREQLELVLSSSDLGVWDWDIRHDRIERNARSADILG 365

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                ++   R W+  I   DR      +++ +     + + E+R+   + +  W++   
Sbjct: 366 CDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTLNRKVRWILDTG 425

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
           + +  ++N + LR  G   DIT+ K   E +  +A   D
Sbjct: 426 KVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 10/273 (3%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +         +  + F G+     +   + Y   +  +   I +  IV      +I+   
Sbjct: 65  FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386
           +    A +      L       + +     L N I  P L    + ++ +          
Sbjct: 125 RKSYLANISGREIFLFAYAVHIIMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184

Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +          Q    D              +    I +  +   P +  +L  +   +
Sbjct: 185 LLSRRFELECDEQIRLQDDFLFRSQFNVGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 W    H +D ++     +  +       + + R    D    +  + +      
Sbjct: 245 L--RMTWAQITHPDDLESDTLQFELMLRGEIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +   L  I    DIT Q  +L      A ++ L
Sbjct: 303 SNTALLVIAGYLDITSQ--ALADQEVLASREQL 333


>gi|229020519|ref|ZP_04177266.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|228740790|gb|EEL91041.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 885

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 179/857 (20%), Positives = 352/857 (41%), Gaps = 34/857 (3%)

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGA--VVTFIMEISTPNLPQ 172
           S  F   L              +  R+   D   F   ++P     + F++  +   L +
Sbjct: 41  SRLFWIPLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSDFFYLLFLISFAFAFLYE 97

Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230
           I +++ N  +       +          + A F   +Y++   ++ I T +    +V L 
Sbjct: 98  I-IYDRNLLEQLSTICDI-------CIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 149

Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287
           Y   D  FL   +NL    L +        L S+LI++      Y +   +  +    T 
Sbjct: 150 YPMADLLFLLIGINLLFRPLFLLPKQVGALLGSALILYATTDAIYAYIKYFQPEHSMFTV 209

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           +    + ++               +  +           +          ++ I    + 
Sbjct: 210 APFYQVTLVLVAIACILHTKEPEKQEQVLLTPRLGESIRLSLPYISVVMLIVFILVENVF 269

Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLATGYFSQ---GIFS 402
             I  IGL +     L   ++       L+L  +        Q  L T    +    ++ 
Sbjct: 270 APIVVIGLMVTFAFVLIRHMLVRRQNKILLLAQMQFNSELEKQIELRTEDLVEQKNELYH 329

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +          D ++  D+  + +       T+LG  +  +      +   ++  D +
Sbjct: 330 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 387

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                       +   +  E R    +   +++ +   P+      I     +  DITE 
Sbjct: 388 EIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGVYLMIKDITES 444

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E I   A+ D LT + NR+SF   L   +  +         VM ID+D++K IND 
Sbjct: 445 KQQQEQINFLAYHDTLTELANRRSFHQHLEKAIARAKVSKRP-FAVMFIDLDRFKVINDT 503

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      +   A  +  ++ 
Sbjct: 504 LGHRVGDLLLIAVAKRLERISTQNMKLARLAGDEFTILIENYKKRTDVKRIADMIVVAMN 563

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N    +    ++ 
Sbjct: 564 EPFEIENQHLHISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKK 623

Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I++DL LA+ N+E YLVY P I     +I+G EALI+W HP  G+IS  EF+ I
Sbjct: 624 MERKARIEKDLPLALVNNEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPI 683

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   +  +  ++L    R +  W+       + + +N+++++   N+L E +  ++  
Sbjct: 684 VEETPQVVPLGHWVLRESCRQLKIWQS-FGYTSLKMSVNLSAREFQQNQLIENISRILKD 742

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S L+YL   P DT
Sbjct: 743 VEIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 802

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C+Y+Q  
Sbjct: 803 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLKKNNCNYMQGY 862

Query: 939 HVASPLGFNSILKLLKE 955
           + + PL     ++ L++
Sbjct: 863 YFSKPLTSKEFIRFLQK 879


>gi|91776976|ref|YP_546732.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
            KT]
 gi|91710963|gb|ABE50891.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC and GAF sensor(s) [Methylobacillus flagellatus
            KT]
          Length = 1238

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/622 (22%), Positives = 271/622 (43%), Gaps = 37/622 (5%)

Query: 357  AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLAVLG 413
                 L ++             V +     ++ V A  + +          E+  L +  
Sbjct: 620  WSMPILSSNQQVLGTFAVYSREVRVPEQREMELVSACSHIAGIAIERHHSEEQLKL-LET 678

Query: 414  S----GDIVW--DWDIVR----DRVTTTPDIATILGLASGSMHGPIRNWLPYIHI----N 459
            S     DIV   + D         +        ++G  +  + G    +L          
Sbjct: 679  SIARLNDIVLIAEADSEGKQNPRIIFVNKAFERLMGYTAEEVLGKDPGFLDG--PNTQME 736

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            +    + +L          ++ E      + +  W+ + I P++NS G    ++ +  DI
Sbjct: 737  ELWRVKALLKQ-----GESVRTELVNYRKNGEEIWLEMDILPIANSAGVFTHWVSVQRDI 791

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            TE+K +   I   AF D LT +PNR   LDRL   L  S         ++ +D+D +K +
Sbjct: 792  TERKAAESRIQHLAFYDMLTNLPNRLLLLDRLEQALLNSMRLKR-SGALLFLDLDNFKTL 850

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFA 634
            ND  G   GD +L  + +R+   ++  D +ARL G+ F +++ + +      + + +  A
Sbjct: 851  NDTHGHDFGDMLLEQVAQRLLNSVRITDTVARLGGDEFVVVVENLSEQGCNAAQEASLVA 910

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +  +++ P  L   E   + SIG A +    ++T  E+LK A+LAMY AK  G N   
Sbjct: 911  DKILLALSQPFRLSGYEHYSSCSIGVALFCNEQQVTVDELLKRADLAMYEAKAAGRNTFR 970

Query: 694  SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F  +          ++EDL  A+   E+ L Y P +      ++G EAL++W+HP+ G 
Sbjct: 971  FFDPAMQALITKRAAMEEDLRQALRRDEMRLYYQPQVD-SQGSLLGAEALVRWEHPQQGL 1029

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            +S + F+ +AEE  +I  I  ++L      +++W  +     + + +N++++ L  ++  
Sbjct: 1030 LSPAAFIELAEETGLILPIGEWVLRTACMQLVAWAGRPETAGLVLSVNVSARQLHQHDFI 1089

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            + + +++ +T  +P  +KL  +ES ++ N E     +  L+ +G+  ++DDFGT  S L+
Sbjct: 1090 DRVFSILKETGANPQSLKLELTESTLVENIEEMITKMNILKAMGVGFSMDDFGTGYSSLA 1149

Query: 872  YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P   +K + S +          +I+++II +   +   ++A+ +      + L +
Sbjct: 1150 YLKRLPLSQLKIDRSFVRDVLVDSNDASIVQTIIALGHGLGIEVVAEGVESWEQQQFLEK 1209

Query: 930  MGCDYIQDSHVASPLGFNSILK 951
             GC   Q      P     + +
Sbjct: 1210 HGCLEYQGYLFGRPQPAEQLER 1231



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 117/401 (29%), Gaps = 83/401 (20%)

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRL-----------DNDIIQPALVGGLVLIV 379
           +    RA     A     +  +    ++   L            N  +  AL  G+V  +
Sbjct: 289 LGRMSRARWDFIAHTFAELGLVEPGYSLDGFLWKDGDDATNPLVNWFMAGALFTGIVAGL 348

Query: 380 ILI------------GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           +L+               + + V         + S  E+  L    +   +    +    
Sbjct: 349 VLLWNLQIRRRVRERTQALHEEVRQRRMVEMELQSSQEQVRLTFHSASAGIAMTSVDGQF 408

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS------FVGYRRGRLQY 481
           +   P    I+G +   +          +H  D ++ R  LD+       +  +  R   
Sbjct: 409 LLVNPAFCEIVGYSEDEL--------KKMHCRDLNDGRNELDAWKNRQWLLEGKIDRSVV 460

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R      +  W+ I    +   +G     I +  +I +QK+     +           
Sbjct: 461 EKRYTTKSGRSVWVRISASLIKGPDGSPRNLIKVVENIEQQKRQETLQVEQ--------- 511

Query: 542 PNRQSFLDR-----------LTTILDLSATDDNLRPTVMVID-----------------I 573
              +  L+R           L T+  L     +L  ++M++D                 +
Sbjct: 512 ---RHLLERIAAGAVLDDVLLATVTLLEEQYPDLMFSIMLLDKANAFARGIALRLPKRYL 568

Query: 574 DKYKKIN-----DVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNS 627
           DK K +         G A  +   V +     +LL      LAR  G R    +   +++
Sbjct: 569 DKLKGLQIGPAAGSCGTAAYERRTVVVADIQQDLLWRNYRDLARRFGLRACWSMPILSSN 628

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ++        + + +P       ++  + I   +      
Sbjct: 629 QQVLGTFAVYSREVRVPEQREMELVSACSHIAGIAIERHHS 669


>gi|53802775|ref|YP_115468.1| sensory box protein/response regulator [Methylococcus capsulatus
           str. Bath]
 gi|53756536|gb|AAU90827.1| sensory box protein/response regulator [Methylococcus capsulatus
           str. Bath]
          Length = 710

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 137/577 (23%), Positives = 255/577 (44%), Gaps = 16/577 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +       +      +   +    S + +   +     V   P    + G     + G
Sbjct: 133 RRLQREIAEHKAAREQLQVAGMVFSASSEGMLLVNADNRIVAVNPAFVALTGYGPEDVVG 192

Query: 448 P-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              +      H      F   + + +    G  + E   R  + + +   + I  + +  
Sbjct: 193 KDPKLLQSGRH---GPAFYQAMWAALEA-TGTWRGEIWNRRRNGEEYAEHLTINTIYDEA 248

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +   + + +DITE+K S   I   +  D LT +PNR+   +RL    + +  D   R 
Sbjct: 249 GKVHLRVALFSDITEKKASEALIEFQSCYDALTRLPNRRLLAERLALASERAHRDRG-RV 307

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL--ARLSGNRFGIILISE 624
            ++ ID+D +K++ND LG   GD +LV +  R+   ++  + +  ARL G+ F +I+   
Sbjct: 308 ALLYIDLDHFKEVNDTLGHHQGDALLVQVAHRVRRCVRESETVTVARLGGDEFTVIVPDF 367

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               ++   A A+  S++ P  L ++   V+ASIG   +      +  +L+NA+ AMY A
Sbjct: 368 EGMDEVERLARAIIDSLSEPFRLGDQLAHVSASIGITVFPDDAADTDGLLRNADQAMYAA 427

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  ++F     R+  +   + + L  AV+  +L L Y PI+ L    +   EAL+
Sbjct: 428 KRAGRNGYQAFNPEMQRAMSMRVRLSQALRDAVQAGQLRLHYQPIVELASGRVRKAEALL 487

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP++G +S + F+ IAE+   I  I  ++ ER A     WR +       + IN++ 
Sbjct: 488 RWEHPEFGEVSPAAFIPIAEDCGSIHCIGDWVFERAACQAARWRSRFG-TDFQVSINVSP 546

Query: 803 KDLLD--NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +       +    ++  + +     S + L  +E+++M   +     L + R  G+ + L
Sbjct: 547 RQFQAGGRDFGRWLER-LGELGLDGSMLALEITETLLMDTDQAIADKLAQFRAAGVQIAL 605

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL     D +K + + +   T    + L   +I+ MA  +   +IA+ +
Sbjct: 606 DDFGTGYSSLAYLKEFRIDYLKIDRTFVRDMTPDSKSFLLSEAIVTMAHRLGLKVIAEGV 665

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L R+GCDY Q    + PL  ++   LL+ 
Sbjct: 666 ETPQQYALLERIGCDYFQGYLFSRPLPEDAFEGLLRS 702


>gi|302872893|ref|YP_003841529.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor obsidiansis OB47]
 gi|302575752|gb|ADL43543.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Caldicellulosiruptor obsidiansis OB47]
          Length = 1016

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 141/563 (25%), Positives = 269/563 (47%), Gaps = 11/563 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +  + E+    V    D++++ DI + ++     +     +        +  WL Y+H +
Sbjct: 449  LQEEKEKYKFLVENVSDLIFELDINQKKIELYGKLKDSFDVDIICSTKSLLVWLEYLHED 508

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            DR          +      ++ +FRV+    ++ W+ IR     +   +  + + +  D 
Sbjct: 509  DRGKVFRKFQDAIFLGDEDVELDFRVKDKCGRWRWLSIRAHINYDEQKNPEKIVAVCVDW 568

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T +K+  + I   A+ D LTG+PNR+ F + L   L  +   +     V++IDID +K I
Sbjct: 569  TAKKEYEDRIEHIAYYDTLTGLPNRKLFEEILEDWLKKT-ETEKSTGAVVLIDIDNFKDI 627

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAIA 636
            ND+ G   GD+ L ++  ++ E LK        AR+ G+ F +IL       ++ +F   
Sbjct: 628  NDIYGHEAGDEYLKAIGEKVLEYLKKLEVKTFFARVGGDEFAVILHGLAKKEQVIEFCAQ 687

Query: 637  MRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            + K     I +   +R +  +AS+G + +        E+ +N ++A+  AK  G N  + 
Sbjct: 688  LLKIFESEIYIESIDRHLFTSASMGVSFYPDDGKNVKEIFRNVDMALSSAKDNGKNDFQI 747

Query: 695  FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            F          ++ I+++L  A+E  +  L Y P+I L D EI  +EAL++W+ P  G +
Sbjct: 748  FMPFILMKNLKKIGIEKNLKKAIEEDQFELYYQPVINLKDMEIHSVEALLRWNLPGKGMV 807

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            S  EF+ +AEE  +I  I   ++E+   D+ +W  +     + + IN++ +        +
Sbjct: 808  SPLEFIPVAEESGLIVKIGEMVIEKAFSDLKNWERKGIDY-LHMAINLSVRQFKTKFFID 866

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++ LI +    P +I    +E+  + N + S  +L  L ++GI   +DDFGT  S L Y
Sbjct: 867  VVKKLIERYSVDPQKISFEITETGAVENFDVSLKILSFLCQMGIKFMIDDFGTGYSSLIY 926

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L  +P   VK + S ++    +++  AI+  I+ MA  I+  ++A+ +  + +++ L  +
Sbjct: 927  LRRLPIGGVKIDKSFISEIESSKESRAIVEGIVLMAHKIDLKVVAEGVETKKELEVLKEV 986

Query: 931  GCDYIQDSHVASPLGFNSILKLL 953
            GCD+ Q    + PL    + KLL
Sbjct: 987  GCDFAQGYLFSKPLPKTEVEKLL 1009



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 53/164 (32%), Gaps = 2/164 (1%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           N     + +  L +I   +  TV+  +        G  +      L    +  IV   ++
Sbjct: 258 NRETIFSFLFILAIIFFAVSITVLVMIKINKRLEHGKRAYEIYAQLLADNANAIVLTLNL 317

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             + +        + G  S  + G    W+     + +  +   L   +   +    +E 
Sbjct: 318 KGEIIYFNNFAQQLTGYKSEEVVGKK--WVDIFIPSHKREYMENLFKKIAEEKILNNHEN 375

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +   D +  W++     + +   +    I    DIT+ KK+  
Sbjct: 376 EIITKDGEIKWILWNNALIESPYLNEPLIISTGLDITQIKKTQR 419


>gi|114564926|ref|YP_752440.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114336219|gb|ABI73601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1487

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 142/568 (25%), Positives = 257/568 (45%), Gaps = 17/568 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--P 454
             + + S+    + A   + + +   D+ ++   +      IL      + G   + L   
Sbjct: 926  QRTLESEANLLAQAFENTSEGMLILDMKKNIKISNAAANLILAAKKSDLAGKPFSDLVFE 985

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             +   D +            +      E     +D     + + +  M N NG  L Y+ 
Sbjct: 986  TVEPFDMEEVFD--------KERFWTGECEFNCSDGSRCPVWVNVSTMFNMNGSALHYVV 1037

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            + +DITE+K +   +   A  D LTG+ NR  F  RL  +++ +         ++ +D+D
Sbjct: 1038 VFSDITERKHNELHLRRLANNDMLTGLANRAMFSRRLGQVIETAKQQKET-LALLFLDLD 1096

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++K +ND  G ++GD +LV    R+   L    +L R  G+ F I+L    +   I   A
Sbjct: 1097 RFKHVNDSYGHSMGDALLVEAASRLQSCLSEEHLLCRFGGDEFVILLRDAKDVDTINHIA 1156

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              + K I  P  L  RE  ++ SIG + W+    T   ++KNA+LAMYHAK  G  H + 
Sbjct: 1157 KQLLKQIETPFKLYGREFFISTSIGISIWSDDDQTPETLIKNADLAMYHAKEEGRGHFQY 1216

Query: 695  F--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGN 751
            +    ++     + I+ DL  A+  +E  L Y P I       IVG+EALI+W HPK G 
Sbjct: 1217 YSAERNAEALYHLRIEADLHRAILCNEFELYYQPQIDVDQQNSIVGVEALIRWKHPKDGM 1276

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            ++   F+ IAE   +I  I+ ++L +   D   W  Q     I + +N+++      +  
Sbjct: 1277 VNPDVFIGIAESCGLIVEIDRWVLTQACLDGADWH-QRYQSEITVSVNVSAMHFRQPDFI 1335

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            + + A + +T      + +  +E V+M   + +   L  L ++GI + +DDFGT  S L+
Sbjct: 1336 DFLTATLHQTGMPARCLSVEITEGVLMKEIDIASQHLRALEQLGIDVAIDDFGTGYSSLA 1395

Query: 872  YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL     + +K + S +      +   AI+ SII +A+N+   ++A+ +     + ++ +
Sbjct: 1396 YLRSFQVNILKIDRSFLIHIDTHQADQAIVSSIIELARNLSLEVVAEGVETSEQLAQVVQ 1455

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKERF 957
             GC  IQ  + A P+    +   +K + 
Sbjct: 1456 RGCHIIQGYYFAKPMPKAELELDIKRQM 1483



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             + +      +  +    ER   ++ GS   +W+W      ++       +LG    + 
Sbjct: 791 RQRQIHRFKQMNHALVESDERLRQSLKGSDSDLWEWHASTQVLSLDNR-GGVLG--PDTH 847

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSN 504
                  +P IH +D +   ++    V  +   +  E+R R   D+Q+HW+ I+ R +  
Sbjct: 848 INVKLEDIP-IHQDDVERITSVWQDLVNGKVEMIDAEYRYRNQHDHQWHWLRIKGRAIEV 906

Query: 505 S--NGDILRYIGIANDITEQKKSLEGILCNA 533
              NG ++   G+  DIT+Q+         A
Sbjct: 907 DINNGRLIYAAGMYTDITQQRTLESEANLLA 937


>gi|94495787|ref|ZP_01302366.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas sp. SKA58]
 gi|94424479|gb|EAT09501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas sp. SKA58]
          Length = 854

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 150/746 (20%), Positives = 297/746 (39%), Gaps = 32/746 (4%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276
                  +  ++L         L  LV    G            +   L+I       + 
Sbjct: 20  SFFHIARLWPLILLSKMCVILILGLLVFRQQGWSQFLLLGLMFLVDGMLMILPRQD-RFR 78

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
                +       +  ++ L   ++    +  +       + +      ++   + G  R
Sbjct: 79  SLLPHIQTWAMLPMLFLSGLSYSAWIAGALGWTQTASPALTALSQLVVALLVACIVGDRR 138

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-----TVIQHVL 391
               +          I  ++     +   ++   L+   V  V            +    
Sbjct: 139 ----LLGMSYFLGLLIAAFIGSAGLIPIGLLSSGLLVMAVATVRQASVDRDRAMAMHRQD 194

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                S  +  + ER            W+ D        +  +   + L  GS+ G +  
Sbjct: 195 LRAQRSDRLLQEHER------SGRGWFWETDRQGSLTYISDTLCETMNLPCGSLIGRV-- 246

Query: 452 WLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           +   +   DR        L   +  R G  +       +  +  W  I  +P+ N  G  
Sbjct: 247 FTDILRPGDRQAGDGERTLGFHLSARTGFSEIPVCAALSK-EERWWSISGQPVFNEYGQF 305

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             + G   D+TE ++S   +   A  D+LTG+ NR   L  L   +           T+M
Sbjct: 306 HGFRGSGTDLTEMRRSQAEVTRLAQYDSLTGLANRIQMLRSLEQAVAARHGRPG-ECTLM 364

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D++K +ND LG   GD +L  +++R+  ++    ++ R  G+ F I+L   ++   
Sbjct: 365 MLDLDRFKSVNDSLGHPAGDTLLRQVSQRLQRVVGEKGLVGRQGGDEFKILLPRHHDKSS 424

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A A+  ++A P  +    + +  SIG +      +T+  +++NA+LA+Y AK  G 
Sbjct: 425 LELLAKAIIATVAEPYTIEGTSVVIGVSIGVSMSPQDGVTAEALIRNADLALYAAKGDGR 484

Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +         DR  ++EDL  A+    L+LVY P++    E+I G EAL++W+H 
Sbjct: 485 GVHRFYAPEMHADAEDRRKLEEDLRHALAADGLHLVYQPVVSSRTEQITGYEALLRWNHA 544

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G IS + F+ IAE+  +I  +  ++L     D   W +      I + +N++     +
Sbjct: 545 TRGPISPALFIPIAEDTGLIGPLGEWVLRTACLDAAQWPE-----GIRVAVNVSPTQFAN 599

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                 +   ++    +P R++L  +ESV + +   +  +  RL+ +G+ L LDDFGT  
Sbjct: 600 PGFPSTVMNALAAAQLAPERLELEITESVFLNDDSDTDSMFARLKSLGVRLALDDFGTGY 659

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           S L YL   PFD +K + S + G+     +  AI+++I+ +A+ ++    A+    + ++
Sbjct: 660 SSLGYLKKAPFDKIKIDQSFVRGAAIKGSRNSAIIKAIVSLAEALDMDTTAEGAETQDEL 719

Query: 925 KELTRMGCDYIQDSHVASPLGFNSIL 950
             + ++GC +IQ      P+    +L
Sbjct: 720 ALIRQLGCSHIQGYIYGRPMPMEDVL 745


>gi|94265262|ref|ZP_01289021.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93454243|gb|EAT04559.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 989

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 145/586 (24%), Positives = 273/586 (46%), Gaps = 13/586 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPD 433
           L  +      +  +       + + +  ER  L   A+  S D V   D+    ++  P 
Sbjct: 256 LYGLPATLEQVAQLRQLQDEQRALRASEERHRLQVAALNASRDGVVITDLEPKIISVNPA 315

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
             TI G     + G   + L   H +DR  ++++         G  Q E   R  D + +
Sbjct: 316 FTTITGYHEKEVRGKSPSLLKSGH-HDRAFYQSMWAQLKQQ--GFWQGEVWNRRKDGEVY 372

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             ++ I  + +  G+   Y+G+  D+T  ++S E +   A  D+LTG+PNR      L  
Sbjct: 373 PELLSISTVYDEAGEPSHYVGVKTDLTNLRRSEERLQHLAHHDHLTGLPNRLLLEALLEH 432

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L+ +  + + R  V+V++ D+++ IN+ +G A GD++LV++ +R+  +L+  D LARL+
Sbjct: 433 ALERAQREQS-RLAVLVLNCDRFRTINESVGYAAGDELLVAVVKRLQSILRAEDTLARLA 491

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSE 672
           G+ F ++L   ++  ++      + + +  P  L    E+ + AS+G + +     T + 
Sbjct: 492 GDEFALVLEGLDDYREVEFTLQRLWQVLEQPFALPDGYEVHIQASVGISFYPQDDDTVAG 551

Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +L  A+ A+  AK  GGN         +      + ++  L  A++  E  L Y P + L
Sbjct: 552 LLVRADGAVNQAKDGGGNRCYYATSTLNEESRRGLELEAALRRALQQREFLLYYQPKVAL 611

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               I G EALI+W  P  G ++  EF+  AE   +I A+  ++++   R +  WR++  
Sbjct: 612 AGGRITGAEALIRWQRPGHGLVAPGEFIPAAERSGLIVAMGAWVIDEGCRQLRRWREEGL 671

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + +N+++       L   ++  +++   +  ++ L  +ES++M  PE +   +  
Sbjct: 672 G-DLRLAVNVSASQFRAPGLVTALKQALAEHRVAAGQLTLELTESMLMSEPEAAIARMEE 730

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+ +G+ L LDDFGT  S  + L   P D +K + S + G   +     I  SII MA  
Sbjct: 731 LKALGVGLALDDFGTGYSSFANLSRFPIDQLKIDRSFVEGIVSSPDAATIAASIIAMAHQ 790

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +   ++A+ +  +     L R GCD IQ    + PL      +LL+
Sbjct: 791 MRLKVVAEGVENQPQANYLRRNGCDEIQGFLFSKPLPAADFARLLE 836


>gi|302878206|ref|YP_003846770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302580995|gb|ADL55006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 908

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 146/588 (24%), Positives = 277/588 (47%), Gaps = 19/588 (3%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           G  V +V++      ++          + +   +         + V  +D     +    
Sbjct: 332 GQAVGVVMVFHDVSKRYA-----LLAELRAARAQFETLFEQLPEGVLLFDENLAVIMHNR 386

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
           + A +L  +S          +  +  +D+       +     + GR  +E R R    + 
Sbjct: 387 EAARLLEYSSKETLQLRVFDIEAM--DDQAAIVARREKL--QQTGRDDFESRYRTRSGRL 442

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             + + ++ +   +G I  +  +  DITEQK++   I   A+ D LTG+PNR+   DRL+
Sbjct: 443 LEVDVSVQVVQLPDGRIA-FQTLFRDITEQKQAALQIEHLAYHDQLTGLPNRRLLHDRLS 501

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +  +   D  +  V+ +D+D +K +ND LG   GD +L  +  R+   ++  D LAR+
Sbjct: 502 HAISSAVRRD-AQLAVIYLDLDHFKDVNDSLGHGTGDALLQVVAERLLGCIRADDTLARM 560

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L   N++   +  A  +   ++ P+ +   E+ +T S+G +        + E
Sbjct: 561 GGDEFVLMLNDLNDADSASTAAEKIMHELSRPVCIGGDELRITPSLGISLCPGDGRDADE 620

Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +LK A+ A+Y AK +G      +         +RV ++  L  A+E  E  L Y P + L
Sbjct: 621 LLKYADAALYQAKQQGRATYRFYTQALHDQSVERVQLERLLRHALERHEFELYYQPQVDL 680

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EALI+W+HP  G +S   F+ IAE   +I  I  ++++   R    W DQ  
Sbjct: 681 RDGRIIGCEALIRWNHPGMGQVSPGRFIPIAEHSGLIIDIGNWVMQEACRQPKRWHDQGR 740

Query: 791 MPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              I +  N++++  +   EL + ++A ++++    +R+++  +ES+++ +P+    +L 
Sbjct: 741 D--IKVSFNVSARQFMRPAELMQSLKAALAESGVDATRMEVELTESLLL-DPQGMGEVLH 797

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            +R +GI L LDDFGT  S LSYL   P + +K + S ++ +        ++++II MA 
Sbjct: 798 EIRALGIQLALDDFGTGYSSLSYLRRFPINILKIDQSFVSDADNNPDDAEMVKTIIGMAH 857

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           N+  +++A+ I  E     L   GC   Q  H + P+      +LL+ 
Sbjct: 858 NLRMSVVAEGIETEAHRALLAMQGCRVGQGYHYSRPVPAEEFSRLLQR 905



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/292 (10%), Positives = 78/292 (26%), Gaps = 46/292 (15%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-R 450
                 + I     R        GD V   D+     +       +LG   G   G +  
Sbjct: 215 QVYRALREIVLSDARIRAIYQAIGDAVLVADMQGRVESINATAQKLLGWREGEARGRLIS 274

Query: 451 NWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                  ++ +    +  +S +       +     +R  D     +     P+ + +G  
Sbjct: 275 EVFELYDVHHQQRVESPAESVLRDGCPIPMSNGMMLRRRDGSELAVEDSAAPVRDEHGQA 334

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + + +D++++   L  +              R  F      +             V+
Sbjct: 335 VGVVMVFHDVSKRYALLAELRAA-----------RAQFETLFEQL----------PEGVL 373

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           + D +    I           +      R+ E      +  R+        + + ++   
Sbjct: 374 LFD-ENLAVI-----------MHNREAARLLEYSSKETLQLRV------FDIEAMDDQAA 415

Query: 630 IADFAIAMRKSIAMPINL-----LEREITVTASIGFASWTSSKITSSEMLKN 676
           I      ++++              R + V  S+        +I    + ++
Sbjct: 416 IVARREKLQQTGRDDFESRYRTRSGRLLEVDVSVQVVQLPDGRIAFQTLFRD 467


>gi|229175975|ref|ZP_04303471.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228607468|gb|EEK64794.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 887

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 174/870 (20%), Positives = 353/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 30  SYILYFSNRKEGLPRLFWTVLSVGTLSYFIGDMVVAYQRLILKDYYTF---VDPSD--FF 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 85  YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 138

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +
Sbjct: 139 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLSKKVGALLGSALILYATTDAIYAY 198

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 199 IKYFTPEYSMFTVTPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISV 258

Query: 335 ERAVLLIPAWILI--FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +    +    +       + + +++      L+  +        Q  L 
Sbjct: 259 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 318

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 319 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 378

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +   +        +   +  E R    +   +++ +   P+   +  I
Sbjct: 379 --YYSLTYEEDLEEIISAFHRVKKGK--SISLEVRAYHKNRDIYYLHVTAVPIFLKD-HI 433

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   +   +  S         VM
Sbjct: 434 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEISKR-PFAVM 492

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  L      LARL+G+ F I++ +      
Sbjct: 493 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERLSTPNMKLARLAGDEFTILIENYKKRPD 552

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 553 VKKIADTIVAAMNEPFEIESQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 612

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EALI+W HP
Sbjct: 613 NGSSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALIRWKHP 672

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 673 LLGDIPPCEFIPIVEETPQVVPLGHWVLKESCRQLKIWH-TFGYTDLKISVNLSAKEFQQ 731

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M N + +   L +L++ GI  ++DDFGT  
Sbjct: 732 DHLIENISQILTDIKVDPKHVTLELTERIAMINEKETLSRLKQLKEYGIQTSIDDFGTGY 791

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 792 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 851

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  +  +K L++
Sbjct: 852 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 881


>gi|169827638|ref|YP_001697796.1| hypothetical protein Bsph_2091 [Lysinibacillus sphaericus C3-41]
 gi|168992126|gb|ACA39666.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 581

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/551 (25%), Positives = 270/551 (49%), Gaps = 12/551 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
                 + +   D  +  V   P    + G     + G         +H  +   +  + 
Sbjct: 27  IFENVSEGIMITDEYKKIVMVNPAFEFVTGYKRDDVVGKTPAVLQSGVH--ELPFYLEMW 84

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +       G  Q E   R      +   + I  ++N  G +  Y GI  D++E+K     
Sbjct: 85  EQIRQE--GIWQGEIWNRRKTGDVYPEWLTIVCVTNDEGKVTNYCGIFTDLSERKIVENE 142

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
           +      D+LT + NR ++++R+  +L+  SA   +++  V  +D+D++K+IND LG AV
Sbjct: 143 LEKRLLTDSLTEVSNRFAYIERMDNLLESTSAISHSVQHAVYFLDLDRFKQINDTLGHAV 202

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L+ + +R+ +LLK  DI+AR  G+ F I L +  N  + A FA  +  +I  P+ +
Sbjct: 203 GDSILIEVAKRLKQLLKNKDIIARYGGDEFVITLTNVKNVKEAAKFAEQIISNIEKPMMI 262

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
             +E+ ++ SIG + +      + E++  A+ AM ++K  G N    +           +
Sbjct: 263 NGQEVFISTSIGVSVYPVDGRNTEELINCADRAMTYSKKNGLNGYSFYFDELQTDAQRVL 322

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           ++  +L  A++N E  L + P I + +E+I GLEAL++W++ + G +S  EF+  AEE  
Sbjct: 323 LLDSELRRAIDNREFELHFQPKICMDNEQIQGLEALVRWNNERLGFVSPGEFIPYAEETG 382

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  ++  +LE+    +I  +       I + INI+S     +   + +Q ++ +     
Sbjct: 383 LIIPLSEVILEKACEAVIQMQKYGW--KIPVAINISSIHFKQHNFLDSIQTILERYNMPA 440

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +  ++  +E  VM +   +   L RL+++G  +++DDFGT  S LSYL   P D +K + 
Sbjct: 441 NNFEIEVTERTVMNSANETVSKLVRLKQLGFKISIDDFGTGYSSLSYLVRFPLDCLKIDR 500

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +      +++ A++ +II M+  ++  ++A+ +     +  L +M CD IQ  + + P
Sbjct: 501 SFIQHIGSLDEKQAVVDAIIQMSHRLKMKVVAEGVEQAQQVDILRKMNCDIIQGYYYSKP 560

Query: 944 LGFNSILKLLK 954
           L  N +++ ++
Sbjct: 561 LPLNDLMEFME 571


>gi|104780809|ref|YP_607307.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95109796|emb|CAK14501.1| putative sensory box/GGDEF domain/EAL domain protein [Pseudomonas
            entomophila L48]
          Length = 1124

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 144/585 (24%), Positives = 266/585 (45%), Gaps = 18/585 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLA 441
              T ++ +         + +  E+ + A   S D +   +      +        + G +
Sbjct: 541  SVTTLRDITQQQRAEAALKASEEKFAKAFHSSPDAIIITERQSGCYLEVNDGFCRLTGYS 600

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     +  I  +D+      L + +  R      E   R        + + + P
Sbjct: 601  ATEVVGRSVYDI-GIWADDKQR--AALLNELRERGRVHHREMLGRNKRGDILTVEVSVEP 657

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  S  +    +  A D++  K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 658  I--SLNETDCLLLTARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 715

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 716  -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 774

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        K+ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 775  SGLEGSRELVESKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKR 834

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 835  ADIALYRAKDSGRNTTQLFHSTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 894

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP+ G    ++F+ + EE  +I  +  ++L+          +       
Sbjct: 895  IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACARMLEDGLIDAD 954

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    N+  E +   +         + L  +E +V+ N E +   +  L+
Sbjct: 955  DFSLCVNISPRQFRQNDFVERVLRSLDDYRLPRRMLTLEITEGIVIQNLEDTISKMSELK 1014

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + + +  +        I+R+I+ MA+++E
Sbjct: 1015 RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQTFVRDAPVDPNDAEIVRAIVAMARSLE 1074

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +     ++ L R+GC   Q    + PL      ++L E
Sbjct: 1075 LAVIAEGVELTEQLEFLERLGCHLYQGYLHSRPLPLPEFRQMLME 1119



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 58/157 (36%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 276 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 335

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GLA    H     +   +  ++R+  R    S      G  Q  ++V+  +  
Sbjct: 336 ARAAQLHGLAPVPFHESFDAFFEGVPEDERNVMRQAYRSLREGPAGNYQITYQVQLENGT 395

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   + +G+ LR  G   DIT+Q +  + 
Sbjct: 396 TRFIESRARLYRDEHGNPLRMAGTLLDITDQVEREQR 432



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  + +  +   A+ G+    W WDI   RV+ +     + G           ++L  +
Sbjct: 48  SEQAWQNAPQLLAALNGARLGAWLWDIDSGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 107

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR   R    + V           R+R  D   HW+ I      ++NG     IG+ 
Sbjct: 108 PEEDRARTRQAFQAVVNGEPVEQAMRHRIRWPDGSVHWLEINGSLTHDANGHPQ-MIGVI 166

Query: 517 NDITEQKK 524
            +I+ Q++
Sbjct: 167 REISRQRE 174



 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 45/159 (28%), Gaps = 12/159 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        + +   P  + I G  +
Sbjct: 417 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFSQIFGWET 476

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     L  +     +  + I                 V   +      +I  R +
Sbjct: 477 DQVIGRTAEEL-GLWAESSERAQRIERVIRDQALS--NVAVGVNHRNGTPLTCVISSRLI 533

Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ 535
            + +      +    DIT+Q+++       E     AF 
Sbjct: 534 -SVDNQPCS-VTTLRDITQQQRAEAALKASEEKFAKAFH 570


>gi|229158861|ref|ZP_04286919.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228624845|gb|EEK81614.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 887

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 173/868 (19%), Positives = 349/868 (40%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 30  SYILYFSNMKEGLPRLFWTILSVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
            +           L+E    +D +    +   I I    + A F   +Y++   ++ I +
Sbjct: 85  YLLFLISFAFAF-LYEIIHNRDLLEKLFMICDICI---IVTAQFTLSYYLLIERTIHISS 140

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  F    +NL    L +        L S+LI++      Y +  
Sbjct: 141 TSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 200

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T + +  + ++               +  +           +         
Sbjct: 201 YFIPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 260

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   M       + + +++      L+  V        Q  L T 
Sbjct: 261 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQVQFNSELEKQIELRTE 320

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 321 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 378

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    +  D +            +   +  E R    +   +++ +   P+   N  I  
Sbjct: 379 YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 435

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM +
Sbjct: 436 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEIS-KVPFAVMFL 494

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 495 DLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVK 554

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N 
Sbjct: 555 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 614

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL LA+   E YLVY P I +  ++I+G EAL++W HP  
Sbjct: 615 SSLYTKELYKKMERKARIEKDLPLALVKEEFYLVYQPQIDISTKKIIGAEALLRWKHPLL 674

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   N 
Sbjct: 675 GDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQNN 733

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +  +I+     P  + L  +E + M + + +   L +L++ GI   +DDFGT  S 
Sbjct: 734 LIKNILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTAIDDFGTGYSS 793

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 794 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 853

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  +  +K L++
Sbjct: 854 QKNNCKYMQGYYFSKPLTSHQFIKFLQK 881


>gi|313499909|gb|ADR61275.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas putida BIRD-1]
          Length = 1098

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 144/583 (24%), Positives = 264/583 (45%), Gaps = 18/583 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
              T ++ +         + S  E+ + A   S D +   +    R +        + G +
Sbjct: 515  SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYS 574

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     +  I  +D+      L + +  R      E   R        + + + P
Sbjct: 575  TDEVIGHTVYEI-GIWADDKQRG--ALLAELRERGRVHHREMLGRNKRGDILTVEVSVEP 631

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++    ++   +  A D+++ K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 632  ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 690  -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        K+ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 749  SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP  G    S+F+ + EE  +I  +  ++L+                  
Sbjct: 869  IVGAEVLLRWHHPLLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    N+    +   +         + L  +E +V+ N E +   +  L+
Sbjct: 929  DFSLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMRELK 988

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + S +  +        I+R+I+ MA++++
Sbjct: 989  RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1048

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+ +     +  L R+GC   Q    + PL      ++L
Sbjct: 1049 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLLEFRQML 1091



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 250 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GL     H     +   +   +R++ R    S      G  Q  +RV+  +  
Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLENGT 369

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   +  G  LR  G   DIT+Q +  + 
Sbjct: 370 SRYIESRARLYRDDQGAPLRMAGTLLDITDQVEREQR 406



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  + +  +   A+ G+    W WDI   RV+ +     + G           ++L  +
Sbjct: 22  SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 81

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR   R +  + V           R+R  D   HW+ I      + +G     IG+ 
Sbjct: 82  PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVI 140

Query: 517 NDITEQKK 524
            +IT Q++
Sbjct: 141 REITRQRE 148



 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 15/166 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        + +   P      G +S
Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS 450

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     +  +     +  + I           +     +   +      +I  R +
Sbjct: 451 AQVLGRTAEEI-GLWAESVERAKRIEQVIREQALSNVAVV--LNHRNGDPLTCVISSRLI 507

Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539
           +  +      +    DIT+Q+++       E     AF    D +T
Sbjct: 508 TVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551


>gi|127511747|ref|YP_001092944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella loihica PV-4]
 gi|126637042|gb|ABO22685.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 837

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/568 (24%), Positives = 249/568 (43%), Gaps = 12/568 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
                 +      E  +     S + V   D   + +        I G +   + G   R
Sbjct: 275 RNITSHKAAQEQLELAANIFENSVEGVVITDASGNIIEVHGAFTEITGYSRDEVLGENPR 334

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                 H  D+  F  +  S +    G+   E   R      +   + I  M   +  + 
Sbjct: 335 ILNSGRH--DKAFFERLWRSLLTN--GKWHGEIWNRRKSGAIYPEQLTISSMYGDDHQVR 390

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ +  DI+ QK+S + +    + D LT +PNR      L   L  +A ++     ++ 
Sbjct: 391 YFVAVFADISAQKQSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREE-TELALIF 449

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND  G   GD +LV + RR+G+ L     LARL  + F  +L    +   +
Sbjct: 450 IDVDLFKHINDSYGHVTGDAILVEVARRLGQKLGEEATLARLGSDEFIAVLPHVESDDSV 509

Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +     +R++   P  L +   + +TAS+G A +     +   +L+NA+ AM+ AK  G 
Sbjct: 510 SLMVSRLREAFDAPFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGR 569

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+   +  S      + + ++  L  A+     YLVY P + L   + VG EAL++W+ P
Sbjct: 570 NNYAFYTQSLTLASVEHLKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDP 629

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G IS + F+ +AE + +I  I L++L++ A     W  +       I +N+A   L  
Sbjct: 630 QLGTISPAIFIPVAENIGLINEIGLWVLKQAATQGAQWLAEGKRFG-RISVNVAGPQLQQ 688

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            + C  ++ ++ +    P  ++L  +ES +M +P     +L +L ++G+ L++DDFGT  
Sbjct: 689 KQFCAQVKRVLDEAGLPPEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGY 748

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P   +K + S +          AI +++I +   +   IIA+ +       
Sbjct: 749 SSLNYLKRLPIHKLKIDQSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAA 808

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L   GCD  Q    + P     + + L
Sbjct: 809 FLEAAGCDQAQGYLYSKPRMVEELAEFL 836



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 2/128 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L +    + VW  D+    V     +    G +   +     +          + F  
Sbjct: 167 LQLFIDSLQEHVWMKDVAGRYVLINHSVEIAWGRSKEQLLNRTDD--EIFSPELAEEFVQ 224

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +         E   +  D    W+     P+ + +G +   IGI+ +IT  K + 
Sbjct: 225 GDYESIVRGVQVTAAECEAKDIDQSNSWLETTKVPVVSPDGTLEGVIGISRNITSHKAAQ 284

Query: 527 EGILCNAF 534
           E +   A 
Sbjct: 285 EQLELAAN 292


>gi|242278952|ref|YP_002991081.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio salexigens DSM 2638]
 gi|242121846|gb|ACS79542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio salexigens DSM 2638]
          Length = 1040

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 12/566 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + IF    R       S   +   D   + V T      + G ++  M     N    
Sbjct: 470  AERKIFRHKSRFMQLFESSPQAIALTDSKGNVVDTNRAFNKLFGYSTEEMAPCCEN---- 525

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +   +    R  L   +G      + E   R  + +   + I   P   +  +I     I
Sbjct: 526  LSPTNTGKIRANLKKILGGET--YRTEDMRRHKNGRLIPVSILGYPFLYNE-EISGTFII 582

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DI+++K+    +   +  D+LTG+PNR  FL+RL   LD+S         V+++DID 
Sbjct: 583  YDDISQRKEYERRLSYQSLHDSLTGLPNRTFFLERLEETLDMSRKIPERTFAVLMLDIDM 642

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K+IND LG   GD++L+ + +RI   L+  D +AR+ G+ F +++   +    +     
Sbjct: 643  FKRINDSLGHQAGDELLIEVGKRIKCCLRPVDTVARMGGDEFAVLIEDFSTPQMVIQIIR 702

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +R  I  P+++  RE+ +++SIG    TSS      ++++A+++MY AK +G N  + F
Sbjct: 703  DIRNEIRKPMSISSREVVISSSIGIVFKTSSYEHPEHIIRDADISMYKAKEQGVNKFKVF 762

Query: 696  RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +        ++I+ ++   +  +E +  + P+  + +  + G EAL++W+HP+ G ++
Sbjct: 763  NKTMHEKALQSLLIETEIRQGIPENEFFPYFQPVYSMQNRNLAGFEALVRWNHPERGFLT 822

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCE 812
              + + +AEE  +I  ++  +L    R + +W         +F+ +N++   L   +L E
Sbjct: 823  PDQIIPVAEETGLIVELDRIILFEACRFMSAWIRLYPNANDLFLTVNLSPSQLSKPDLAE 882

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++ ++ +T      +KL  +ES +M     S L L ++ ++GI L +DDFGT  S L+ 
Sbjct: 883  AIETIVQETKIPADNLKLEITESAIMERNAASSLNLKKIGEMGIRLAVDDFGTGYSSLAQ 942

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P  TVK + S ++      + + I+R++  +  ++   +IA+ +     +  L  +
Sbjct: 943  LQRFPASTVKIDRSFVSHMASDHESLEIVRAVNALGHSLSMDVIAEGVETREQLILLKDI 1002

Query: 931  GCDYIQDSHVASPLGFNSILKLLKER 956
            GCDY+Q  +   P       KL+K R
Sbjct: 1003 GCDYVQGYYFDKPQTNEDAEKLVKMR 1028



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 48/160 (30%), Gaps = 9/160 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++     +   L      + +    ++       +   ++            P +A I+
Sbjct: 326 LMVAISEQVAAALLRRQAEEALLESEKKFRSIFENATVAIFQISAAGRVTVANPALAAIM 385

Query: 439 GLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G      M         +++  + +  +  L   +           RV   + +  W+ +
Sbjct: 386 GYDNVDEMLAENDLASRFLY--NHEGRQKFLKRLLTDGAVNGML-LRVNHRNGKEKWVTV 442

Query: 498 RIRPMSNSNGDILRYIGIANDIT-----EQKKSLEGILCN 532
             R   +S G+ + Y G A D T     E+K         
Sbjct: 443 NARTSYDSRGNPVLYTGTAFDSTLEIVAERKIFRHKSRFM 482



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 12/135 (8%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH----INDRDNF 464
            +    D  +  +     V   P +  +    + ++ G      +  IH        D  
Sbjct: 52  ILHFIPDPAFIINKEGVIVAWNPALEQLTNTKAENVIGNGNFEHINLIHGKRTPGLIDLV 111

Query: 465 R------TILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                   I    +  R   L  E  ++   + +   + ++  P+ ++NG  +  I    
Sbjct: 112 NGCDEIGEIEYGAISRRGRALAAEICIQDLGNRKSTNLWVQAAPILDANGKTIGAIESLR 171

Query: 518 DITEQKKSLEGILCN 532
           DI+ +K++    L  
Sbjct: 172 DISARKQTENINLIL 186


>gi|56752384|ref|YP_173085.1| hypothetical protein syc2375_d [Synechococcus elongatus PCC 6301]
 gi|56687343|dbj|BAD80565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1238

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/623 (24%), Positives = 272/623 (43%), Gaps = 17/623 (2%)

Query: 345  ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFS 402
            +      I    +        + Q      ++    ++     + + A G       I +
Sbjct: 615  MASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYIVRDENGRAIRAVGAMQDISAIVA 674

Query: 403  DGERQSL---AVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              E+  L   A+  +G+ +   D        +   P    I G ++  + G    +L  +
Sbjct: 675  ANEQLRLWLRAIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                +      +   +       +   R    D    W  I + P+ +  G +   +   
Sbjct: 735  --ETQQAELEEMRRALEE-GTYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHLTHMVASQ 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D++E K   E +L  A  D LTG+PNR  FLDRL      +         V+ ID+D +
Sbjct: 792  TDVSESKAFEEMLLQQATHDALTGLPNRLLFLDRLDQAAARA-RGGGSPIAVLFIDLDNF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND    + GD VL     R+ + ++  + +ARLS + F I+L   +   K    A  
Sbjct: 851  KAINDGFSHSEGDAVLQIAAGRLQQCIQEHETVARLSSDEFVILLTDLDVQSKARVKAAM 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            ++  +A P  ++   I +TASIG A++     + SE+L+ A+LA+  AK +G N   SF 
Sbjct: 911  IQSLMAKPFEVMGNPIELTASIGVATFPHDGQSGSELLQAADLAVCAAKQQGKNLWCSFS 970

Query: 697  --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +      R+ I++DL  A+ ++ L L + P + L+   ++G E L++W+HP+ G ++ 
Sbjct: 971  EAMREQLRSRIDIEKDLRQALIDNSLELYFQPQVDLVTHRLLGFETLVRWNHPERGLVAP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             EF+ IAEE  +I AI L+++      +  W D        +  NI+++  +   +   +
Sbjct: 1031 GEFIPIAEESDLIDAIGLWVMRAAGLTLRRWIDHEGFTG-SLSFNISARQFIRQNIFLKL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              ++ +    P ++++  +ES ++ +PER    L   R +G  + LDDFGT  S L YL 
Sbjct: 1090 FDVLQEFQIPPHQLEIELTESSLIESPERFVQWLQEARSMGFQVALDDFGTGYSSLGYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P + +K + S +          AI+++I+ MAK ++   IA+ +        L  +GC
Sbjct: 1150 RLPINALKIDRSFIRDLPHDHDDQAIVQAIVAMAKVLKLRTIAEGVERLEQAAFLEAIGC 1209

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
            D +Q      PL     L  L  
Sbjct: 1210 DAVQGFFYGPPLPEAEALAFLHR 1232



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            + +       Q +    ER  L    + D VWD +++ + +  + + + + G     + 
Sbjct: 532 FRDISDRVMSRQLLEEMAERFQLVTRATNDAVWDRNLLTNEIWYSANYSRLFGGEEKEIT 591

Query: 447 GPI-----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +       W   +  + R+     L   +         ++R    D  +  ++ R   
Sbjct: 592 QKLVQTVDLQWRDRLDPDQRERIMASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYI 651

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
           + + NG  +R +G   DI+    + E + 
Sbjct: 652 VRDENGRAIRAVGAMQDISAIVAANEQLR 680



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W+ D+    V T+P +  +LG  S       + WL +  ++DR      +D+ +   R
Sbjct: 199 GYWELDVQSQLVQTSPLVNRLLGKPSDQCLFSWQQWLEHFQLSDRLRLEQAIDTGMQTGR 258

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +Q  + + +       + +R   + +  G++    G+  
Sbjct: 259 -PIQATYALASDSQDRQLVELRAVIVRDLAGNVRSLRGVLE 298


>gi|126173574|ref|YP_001049723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125996779|gb|ABN60854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1015

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 10/568 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + + G     +       L Y  +N
Sbjct: 452  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + +      +G+ Q E   R  + + + + + I  +++  G   R + + +DI
Sbjct: 511  GRDFYTQMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L++ +  +  + N    ++ +D+D +K++
Sbjct: 569  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S  +   I   A  + +
Sbjct: 628  NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 688  RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + G +S +EF
Sbjct: 748  QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WR +  +  I I +N +     D   L      
Sbjct: 808  IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 867  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 927  DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986

Query: 935  IQDSHVASPLGFNSILKLLKERFPLVKN 962
             Q    + P+      +   +  PLV  
Sbjct: 987  GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            L+       + +     Q + +  E+  L +  S   VWDWDI  DR+      A ILG
Sbjct: 306 ALLVIAGYLDITSQALADQEVLASREQLELVLSSSDLGVWDWDIRHDRIERNARSADILG 365

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                ++   R W+  I   DR      +++ +     + + E+R+   + +  W++   
Sbjct: 366 CDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTLNRKVRWILDTG 425

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
           + +  ++N + LR  G   DIT+ K   E +  +A   D
Sbjct: 426 KVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 10/273 (3%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +         +  + F G+     +   + Y   +  +   I +  IV      +I+   
Sbjct: 65  FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386
           +    A +      L       + +     L N I  P L    + ++ +          
Sbjct: 125 RKSYLANISGREIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184

Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +          Q    D              +    I +  +   P +  +L  +   +
Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNVGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 W    H +D ++     +  +       + + R    D    +  + +      
Sbjct: 245 L--RMTWAQITHPDDLESDALKFELMLRGEIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +   L  I    DIT Q  +L      A ++ L
Sbjct: 303 SNTALLVIAGYLDITSQ--ALADQEVLASREQL 333


>gi|313202388|ref|YP_004041046.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Methylovorus sp. MP688]
 gi|312441704|gb|ADQ85810.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylovorus sp. MP688]
          Length = 1150

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 143/578 (24%), Positives = 262/578 (45%), Gaps = 13/578 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             IQ ++ +           E   LA      S + +   D   + +T  P  + + G + 
Sbjct: 575  TIQGIIISSENISARKQAEEELRLAHTVFEHSSEAMLVTDADNNIITINPAFSEMTGYSL 634

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G     L       ++ ++ + ++      G  + E   R    + +   + I  +
Sbjct: 635  EEVIGKNPKILSS-GRQGKEFYQELWNTL--ETSGEWRGEIWNRRKSGEEYAEWLAINNI 691

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               +G + R + + +DITE+K++   I   A  D LT +PNR+ F DRL   +  S   D
Sbjct: 692  YGEDGKLFRRVALFSDITEKKRADALIWNQANYDLLTQLPNRRLFSDRLQQEIKKSQ-HD 750

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            + +  ++ ID+D++K++ND LG + GD +L+  + RI   LK  D + RL G+ F +I+ 
Sbjct: 751  HSQFALLFIDLDRFKEVNDTLGHSHGDYLLIEASHRIQRHLKETDTVGRLGGDEFTVIIA 810

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +  +   +   A  +  ++A P +L    + ++ASIG   +     TS+E+LKNA+ AMY
Sbjct: 811  NLPDPSVMTLIAQRVLDALAAPYDLEGEIVYLSASIGITVFPEDATTSAELLKNADQAMY 870

Query: 683  HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G N    F        +  + +  DL  A+  ++  + + PI+ L  + I   EA
Sbjct: 871  EAKKNGRNRFSFFTPMMQAMAQARMRMMRDLRNALGLNQFTVYFQPIVDLSSQRIYKAEA 930

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+W HP+ G IS +EF+ +AEE  +I  I  ++ ++ A+ +             + +N 
Sbjct: 931  LIRWQHPELGFISPAEFIPLAEETGLIHEIGDWVFQQSAQLVKQCIPIVGD-DFQVSVNK 989

Query: 801  ASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +     D           +S    S   I +  +E +++         L   R  G+ + 
Sbjct: 990  SPVQFRDRAHSHHDWMEYLSGLGLSGHNIVVEITEGLLLNADSGISDKLLHFRDAGMQVA 1049

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S LSYL     D +K + S +   +   + +A+  +I  MA  ++  +IA+ 
Sbjct: 1050 IDDFGTGYSSLSYLKKFDIDYLKIDQSFVRNLSGEGEDLALCEAIATMAHKLDLRVIAEG 1109

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +        L ++GCDY Q    + P+  +  + LL+ 
Sbjct: 1110 VETTAQRDLLAQIGCDYGQGYLFSRPVPADEFMLLLER 1147



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 3/175 (1%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L         +G L L+  ++   +     +    +  + +  +R    + G+    W+
Sbjct: 301 LLPYSRYIAPALGLLSLVGAIVLLWIFLLRRSVKTKTAELANQHQRLQQIIDGTAAGTWE 360

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           WDI        P  A +LG     +      +     H +D +     L++ +       
Sbjct: 361 WDIRSGDCIVNPRWAEMLGYTPDELEPCTADSCRALCHPDDLEQLVQALEAHLRGETDYF 420

Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             E R R  +  + W+  R R    +S G+ L   G   +IT+ K + E  L  A
Sbjct: 421 ASESRRRHKNGHWIWVADRGRVTRRSSQGEALTMSGTRLEITKLKLA-ETTLKQA 474



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               +    E+Q + +  +   V  +D     +  +       G   GS+ G        
Sbjct: 467 AETTLKQAVEQQKMFIQQAPICVAMFDRDMRYLACSNQWQEEFGHQQGSLLGLNHYD--- 523

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H +  + +R      +   R   + +  +R AD Q  W    I P  + +  I   I  
Sbjct: 524 VHPDIPEKWRLAHQRALAGERLEEEEDLWIR-ADGQHLWTRWMITPWMDDSQTIQGIIIS 582

Query: 516 ANDITEQKKSLEGILCNAFQ 535
           + +I+ +K++ E +   A  
Sbjct: 583 SENISARKQAEEELR-LAHT 601


>gi|291613650|ref|YP_003523807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
 gi|291583762|gb|ADE11420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sideroxydans lithotrophicus ES-1]
          Length = 912

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 142/570 (24%), Positives = 241/570 (42%), Gaps = 14/570 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                  +      +  +     S + +   D     +   P    I G A   + G   
Sbjct: 341 FDREVQRKAAEQSLQLAASIYENSSEGMMITDADNLIMAINPAFTRITGYAMEDVIGKNP 400

Query: 451 NWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             L    H  D D ++ + +  +    G+   E   R    + +   + I  + N +G +
Sbjct: 401 GILKSGRH--DMDFYQAMWNEIL--GTGKWIGEIWDRRKSGEVYPKWLTINTVFNDDGKV 456

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              I +  DI+++K+S E I   A  D+LTG+PN + F DRL   +  S   + L   V+
Sbjct: 457 HHRIALFTDISQKKESEELIWRQANFDHLTGLPNWRMFHDRLEQEIKKSRRVE-LPLAVV 515

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K++ND +G A GD +L     R+   ++  D +ARL G+ F ++L   ++   
Sbjct: 516 FLDLDHFKEVNDTMGHATGDLLLKEAALRLSSCVRESDTVARLGGDEFALLLGELSDQDS 575

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I      +    + P  L      ++ SIG   + S       +L+NA+ AMY AK+ G 
Sbjct: 576 IERVNECILNKFSAPFQLGNELAYISVSIGVTIYPSDATEIEALLRNADQAMYAAKNSGR 635

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +  +      +R+ +  DL  A+   +  LVY PI+ L    I   EALI+W HP
Sbjct: 636 NRSCYYTQAMQSVAQNRMSLSNDLHKALAQDQFRLVYQPIVELETGSIHKAEALIRWQHP 695

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S ++F+ IAE+  +I  I  ++  + A  +  WR       I I IN +      
Sbjct: 696 NRGLVSPADFIPIAEQSGLIIQIGDWVFRQAANQVKHWRGAYGK-DIQISINKSPVQFKS 754

Query: 808 NE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +        +  + +   S     +  +ES++M   +     L     IG+ + LDDFGT
Sbjct: 755 DSNTHLAWFEH-LKELDLSGGCFAIEITESLLMDASDTIVSKLMAFGNIGMQVALDDFGT 813

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL     D +K + S +         +A+  ++I MA  +   +IA+ +     
Sbjct: 814 GYSSLSYLKKFDIDYIKIDQSFVRNLAPDSSDLALCEAMIMMAHKLGIKVIAEGVETSEQ 873

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              L   GCDY Q    + PL       L+
Sbjct: 874 RDLLRTAGCDYGQGYLFSRPLSTEDFEGLV 903


>gi|217974179|ref|YP_002358930.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217499314|gb|ACK47507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1015

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 10/568 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + + G     +       L Y  +N
Sbjct: 452  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + +      +G+ Q E   R  + + + + + I  +++  G   R + + +DI
Sbjct: 511  GRDFYTKMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L++ +  +  + N    ++ +D+D +K++
Sbjct: 569  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S  +   I   A  + +
Sbjct: 628  NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 688  RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + G +S +EF
Sbjct: 748  QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WR +  +  I I +N +     D   L      
Sbjct: 808  IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 867  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 927  DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986

Query: 935  IQDSHVASPLGFNSILKLLKERFPLVKN 962
             Q    + P+      +   +  PLV  
Sbjct: 987  GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014



 Score =  111 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 134/410 (32%), Gaps = 50/410 (12%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIG-VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232
           ++++P  + DT +      G+  G + + +A+ +T+ Y   R S+      +   V+   
Sbjct: 58  WIYQPGVFFDTRSVILCISGLFFGGLPTFIAVVMTVLY---RISIGGAGMWIGVGVIVSS 114

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
            +      +        +              +++  F++L        +  +T   +  
Sbjct: 115 GLIGVIWRQYRKSYLANISGREIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTI 174

Query: 293 IAILFCMSFYYPMVTASIARI------------TLASIVLYYTYFIIY-----------H 329
             I   +          + R             +  +                       
Sbjct: 175 FPIATWLLSRLLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLC 234

Query: 330 GMKGYERAVLLIPAWIL------IFIWFIGLWMAITKRLDND------IIQPALVGGLVL 377
            M  Y  A LL   W        +    +   + +   +DN       I++   V    +
Sbjct: 235 QMLKYSEAELLRMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHM 294

Query: 378 IVI---------LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            V          L+       + A  +  Q + +  E+  L +  S   VWDWDI  DR+
Sbjct: 295 TVACKRGGNNAVLLVIAGYLDITAQAFADQEVLASREQLELVLSSSDLGVWDWDIRHDRI 354

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                 A ILG     ++   R W+  I   DR      +++ +     + + E+R+   
Sbjct: 355 ERNARSADILGCDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTL 414

Query: 489 DNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
           + +  W++   + +  ++N + LR  G   DIT+ K   E +  +A   D
Sbjct: 415 NRKVRWILDTGKVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 72/273 (26%), Gaps = 10/273 (3%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +         +  + F G+     +     Y   +  +   I +  IV      +I+   
Sbjct: 65  FFDTRSVILCISGLFFGGLPTFIAVVMTVLYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386
           +    A +      L       + +     L N I  P L    + ++ +          
Sbjct: 125 RKSYLANISGREIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184

Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +          Q    D              +    I +  +   P +  +L  +   +
Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 W    H +D +      +  +       + + R    D    +  + +      
Sbjct: 245 L--RMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           N  +L  I    DIT Q  +       A ++ L
Sbjct: 303 NNAVLLVIAGYLDITAQ--AFADQEVLASREQL 333


>gi|167032524|ref|YP_001667755.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida GB-1]
 gi|166859012|gb|ABY97419.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida GB-1]
          Length = 1098

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 143/583 (24%), Positives = 267/583 (45%), Gaps = 18/583 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
              T ++ +         + S  E+ + A   S D +   +    R +        + G +
Sbjct: 515  SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEINDGFCRLTGYS 574

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     +  I  +D+    + L + +  R      E   R        + + + P
Sbjct: 575  AAEVVGHTVYEI-GIWADDKQR--SALLAELRERGRVHHREMLGRNKRGDILTVEVSVEP 631

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++    ++   +  A D+++ K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 632  ITL--NEVDCLLLNARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 690  -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        K+ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 749  SGLEGSRELVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKR 808

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP+ G    ++F+ + EE  +I  +  ++L+                  
Sbjct: 869  IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    N+    +   +         +KL  +E +V+ N E +   +  L+
Sbjct: 929  DFSLCVNISPRQFRQNDFVGRVLRSLDDYRLPRHMLKLEITEGIVIQNLEDTISKMRELK 988

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + + +           I+R+I+ MA++++
Sbjct: 989  RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQTFVRDAPIDPNDAEIVRAIVAMARSLD 1048

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+ +     ++ L R+GC   Q    + PL      ++L
Sbjct: 1049 LAVIAEGVELTEQLEFLERLGCHLYQGYLHSRPLPLPEFRQML 1091



 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 250 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GL     H     +   +   +R++ R    S      G  Q  +RV+     
Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLESGI 369

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   +  G+ LR  G   DIT+Q +  + 
Sbjct: 370 SRYIESRARLYRDEQGNPLRMAGTLLDITDQVEREQR 406



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 1/128 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  + +  +   A+ G+    W WDI   RV+ +     + G           ++L  +
Sbjct: 22  SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 81

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR   R +  +             R+R  D   HW+ I      +  G     IG+ 
Sbjct: 82  PEEDRARTRQVFQAVFNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPQGRPQ-MIGVI 140

Query: 517 NDITEQKK 524
            +IT Q++
Sbjct: 141 REITRQRE 148



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442
             VI+ +         + +  +R +     S + +         +         + G   
Sbjct: 137 IGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRHDGMIFEVNQHFEDMFGWPG 196

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G     L   ++   R        +      G L  E + RA   + H  I+  + 
Sbjct: 197 SQVIGKTSLELGLWVNPEQRHQVMESTRA----NGGPLIMEVQFRATSGKVHDGILCTQG 252

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +      +   I    D TE+K++       A +D+           +RL   LD + 
Sbjct: 253 IELEG--VTFLISTFVDTTERKRAE-----QALKDS----------QERLDLALDSAQ 293



 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 23/170 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        + +   P      G   
Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWNG 450

Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             + G        W   I     +  + I           +     V   +      +I 
Sbjct: 451 EQVLGRTAEEIGLWAESI-----ERAQRIERVIREQALSNVAVV--VNHRNGAPLTCVIS 503

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539
            R ++  +      +    DIT+Q+++       E     AF    D +T
Sbjct: 504 SRLITVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551


>gi|327478848|gb|AEA82158.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 943

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 136/563 (24%), Positives = 266/563 (47%), Gaps = 12/563 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + S  E+Q LA      + + +   +     +       T+ G +   + G     +  
Sbjct: 386 ELRSQAEQQRLAATVFEAASEGIVIMNDRYRVLAVNDACCTLSGYSREELLGHSVARIAG 445

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                       +   +  R G  Q E        + +   +++R + ++NG +   +  
Sbjct: 446 -SPES-QRQYETMREALE-RHGHWQGELIETRKSGEVYPQWVQLREVRDANGSVTHVVAF 502

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D++ ++K  E +      D+LTG+ NR    +RL         +      V+ ID+D+
Sbjct: 503 VSDLSVRRKIEERLRYLTHYDDLTGLANRGLLKERLQEACQRVRRNGR-NMAVLYIDLDR 561

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N+ LG    D +L  ++RR+ + L   D +ARLSG+ F ++L +  +   +A    
Sbjct: 562 FKLLNESLGHEAADALLREVSRRLSQTLGEADTIARLSGDEFVVLLDAYGSLSGLAHLGS 621

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + I  PI + E+E+ ++ASIG +    +   +  +L+ A  AM  AKH GGN ++ F
Sbjct: 622 RLLQRIRKPIVIGEQELVISASIGVSLLPDNSRDAEVLLRQASTAMQQAKHLGGNTLQFF 681

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      + ++  L  A+E  +L + Y P + L D+ +   EAL++W HP+ G ++
Sbjct: 682 TDRPQASGMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPQRGLVT 741

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AEE  +I  +  F+L    R    W+ +     I + +N++ K L        
Sbjct: 742 PADFIPLAEETGLIIPLGEFVLREACRQARRWQQEGLA-DIRVSVNLSVKQLRQGNFVSL 800

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T   P+ ++L  +ES ++ + + +  +  +LR +G+ L +DDFGT  S LSYL
Sbjct: 801 VRQVLEETGLPPAMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYL 860

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D VK + S ++    + +  AI R+II M  ++E  ++A+ +  +  +  L    
Sbjct: 861 KRFPVDYVKIDRSFISEVEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANL 920

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD IQ   ++ P+      +LL+
Sbjct: 921 CDEIQGYLLSPPVPAEQFAELLR 943



 Score =  118 bits (295), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 100/275 (36%), Gaps = 27/275 (9%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG----MKGYERAVLL 340
           +T + +  +     ++       +  A  + A   L     ++        +G+    ++
Sbjct: 127 VTQALLYGLMGSVVLAASVAYGVSLPAFFSFAVPCLLPAGLLLMTSGEPLQQGWGVLAMI 186

Query: 341 IPAWILIFIWFI--GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           + A + +  W I   +  +I +RL    +   L        +L G  +   V    +  Q
Sbjct: 187 VLATLSLIAWQISRLVTDSIEQRLHRQRLIERLEKAGREADLLNG-RLATEVEQRRHAEQ 245

Query: 399 GIFS------------------DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + S                     R +LA+  S   +WDWD+  +RV  +  +  + G+
Sbjct: 246 QLRSAYDGLEQRVAERTAELGESEARLTLALEASDLGLWDWDLQNNRVHHS-RMQVVFGI 304

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              + +G   + LP IH +D    R  L + +         E+R   AD     +  R R
Sbjct: 305 GLENRYGKDGSRLPDIHPDDLQRVRATLIAHLKGETESFVIEYRALCADGSELCLEDRGR 364

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  ++NG  LR IG   DI+E +   E     A 
Sbjct: 365 VIQRDANGRALRMIGTRRDISELRSQAEQQRLAAT 399


>gi|170724151|ref|YP_001751839.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169762154|gb|ACA75470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 631

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/623 (24%), Positives = 285/623 (45%), Gaps = 15/623 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI-VILIGFTVIQHVLATGY 395
           A+ L+ + + + +  + L       L   + +   V   VL    LI FT  + +   G 
Sbjct: 13  ALYLVLSILWLVLSEVVLRSMSEDPLALAVGRQINVVLWVLSSAALIFFTRARLLNFIGV 72

Query: 396 FSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451
            ++    D  R  +A      + + V   D     V        I G     + G     
Sbjct: 73  GARLRSEDRARLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQDEVLGQRPSK 132

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    H  D   ++ I  +     +G    E   R    + +     IR + +  G++  
Sbjct: 133 FKSGRH--DVPFYQQIYATLAE--KGEWSGEIWNRRKSGEIYPQWQTIRAIHDDGGEMTH 188

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ + +DI+  K + + +   A  D LTG+PNR  F DR    L  +  +      ++++
Sbjct: 189 YVAVFSDISAIKHTEQELAYLAHHDPLTGLPNRLLFSDRAEQALASAQANKRG-CALLLL 247

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D ++ IND LG  +GD +L  +  R+ E++     LARL G+ FG++  +     +  
Sbjct: 248 DLDHFQSINDGLGHTIGDQLLKLVGERLAEVVGNGVTLARLGGDEFGVLAENCQQVGQAG 307

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A A+ + +  P +     + ++ S+G + + S  +++ ++L+NA+ A++ AKH G   
Sbjct: 308 KLAQALIERMREPFDFDGHRLFISVSVGISLFPSDALSAEQLLRNADSALFKAKHNGRAC 367

Query: 692 VESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +        +  ++   +L  A+   EL + Y P+  L   ++VG+EAL++W HP+ 
Sbjct: 368 YALYTEELTAHAQHRVETAGELRRALAQDELRVFYQPVFHLFTSKMVGVEALVRWQHPQR 427

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  SEF+ IAE   +I  I+ ++L    R ++SW+    +   F+ +NI+S+     E
Sbjct: 428 GLVPPSEFIPIAERTGLIADIDAWVLREACRQMVSWQADGRLLE-FVAVNISSRLFGQRE 486

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++ +T   PS +++  +ES VM +PE +   L RLR++G++L +DDFGT  S 
Sbjct: 487 LYRQVAGVLHETGLDPSLLEVEVTESAVMEDPEVALEQLHRLRELGLNLAIDDFGTGYSS 546

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +P   +K +   + G    +  +AI+R II +A+++   + A+ I      + L
Sbjct: 547 LLRLKRLPVQKLKIDQGFVAGLPMDDDDVAIVRVIIALARSMGMQVHAEGIEQPEQARFL 606

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
               C   Q      P+    + 
Sbjct: 607 LEQQCQLGQGYWFGRPVPAEGLR 629


>gi|288961804|ref|YP_003452114.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
 gi|288914084|dbj|BAI75570.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
          Length = 701

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 135/565 (23%), Positives = 242/565 (42%), Gaps = 14/565 (2%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E+  L         D +   D         P    + G     +          
Sbjct: 138 ERKQHEEKIRLLATVFDSVADGILIVDPELTVQAINPAYEIMTGFQREELLRRPLVLFA- 196

Query: 456 IHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                 +  F   + +      GR Q E              + +  +   NG +  Y+ 
Sbjct: 197 --PGSHERDFIDAIWTTARQ-SGRWQGEVTSFRHSGDAFAAALSVTSVRAPNGVLEHYVL 253

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DI+++K     I   A  D LT +PNR    +RL   +  +      +  V  +D++
Sbjct: 254 TIADISQRKSQEHQIRYQASFDRLTDLPNRWLVCERLEEAIIRAQR-GKSKVAVAFLDLN 312

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K++ND LG   GD++L  + RR+    +  D + RL G+ F I+     +    A   
Sbjct: 313 RFKQVNDTLGHHAGDELLKLVARRMRNCTRMTDTVGRLGGDEFLIVAPDAADRSAGARLV 372

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHV 692
             +  S++ P ++  +E+   ASIG A +     T+ ++L+NA+LAMYHAK         
Sbjct: 373 EKVLYSMSEPFSVHNQELFCGASIGIAFYPDDGDTADQLLRNADLAMYHAKRNPEHKYVF 432

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +       + ++ DL  A    E  L + P I L     +G EALI+W HP  G +
Sbjct: 433 YDSGMRERSGFTLGLESDLRRASGGDEFELHFQPKIDLAGNITIGAEALIRWRHPVRGMV 492

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ +AEE  MI  I  + L    R +  W ++    P  + +N++ +   D  L  
Sbjct: 493 SPAEFIPLAEETGMIWEIGAWTLIESCRRLADWIERGLPIP-SVSVNLSPRQFQDARLVG 551

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +++++        R++L  +E  ++G+ E++  +L  L+ IG+ L++DDFGT  S L+Y
Sbjct: 552 FVRSVVEAAGIPAERLELELTEGAMIGDIEKAVTILNGLKDIGVRLSIDDFGTGYSSLAY 611

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P DT+K + S +     +    AI+ +I+ +A+++    IA+ +      + L + 
Sbjct: 612 LKRFPIDTLKIDRSFVRDIVKSTTDPAIVGTIVNLAESLGFDTIAEGVETHEQAEMLRQQ 671

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
            C  IQ   ++ PL  +     L+ 
Sbjct: 672 RCTRIQGYLISRPLPVDQFEAFLRN 696



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 4/139 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHIND 460
              E+       + + ++   +    +   P +A I G  +   +   + +    ++++ 
Sbjct: 20  ETEEQYRSIFENAVEGIYQTTVDGRYLRVNPALAEIYGYASPEDLIANLTDIACQLYVD- 78

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               R      +  +   L +E RV   D    W+    R + +  G I  Y G   DIT
Sbjct: 79  -PGKREAFADLMARQDRVLSFEARVFRRDGSIIWISESARCVRDPAGRIRYYEGTVQDIT 137

Query: 521 EQKKSLEGILCNAF-QDNL 538
           E+K+  E I   A   D++
Sbjct: 138 ERKQHEEKIRLLATVFDSV 156


>gi|89901044|ref|YP_523515.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89345781|gb|ABD69984.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 853

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 144/588 (24%), Positives = 273/588 (46%), Gaps = 16/588 (2%)

Query: 382 IGFTVIQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +    ++  L      +   +    E+  +    S +  +        +  +P      G
Sbjct: 263 LELARLRFSLEQLVAQRTALLNKSEEKYRILADYSPNWEYWMAPDGSYLYVSPACVHESG 322

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMII 497
            A              IH +D     +  + +     G +     FR++A D    W+  
Sbjct: 323 YAPQDFFDNAELMDTIIHPDD----LSAWNKYGPAAAGTVSEPLIFRIKAKDGGERWIEH 378

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
               + +++G  L   G   DI+++ ++ + +     +D LTG+PNR  F + L   L  
Sbjct: 379 VSNRVLDTSGRSLGQRGSHRDISKRHETEQRLDFYINRDPLTGLPNRVLFREFLGRTLQR 438

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  D + +  ++++++D +  +N  LG + GD +L+  ++R+  LL   D +AR+SG+ F
Sbjct: 439 AERDQS-QFALLIVNLDNFNSVNQSLGHSQGDQLLIEASKRLRTLLPDLDAVARISGDEF 497

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            IIL    N+  I   A  M  ++ +P NL +  + V ASIG + + S       +  NA
Sbjct: 498 NIILNQGENAPPIDLVAQRMIDALGIPFNLNDSSVYVGASIGISMYPSDGRDVETLQSNA 557

Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
             A++ AK RG   +  F +        R+ ++  L  +VE  EL L Y P + L+  EI
Sbjct: 558 AAALHQAKSRGRGMLRFFSMEMMGRSKARLTLEAALRQSVERDELRLYYQPQVDLISGEI 617

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EAL++W H + G I  +EF+ +AEE   +  +  ++L    R I  W       P+ 
Sbjct: 618 VGVEALVRWQHAERGLIPPNEFIPLAEESGYVVTLGDWVLRTACRQIKQW--AGLGLPLR 675

Query: 796 -ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+++  L   +L E ++  + +T  +P  ++L  +ES VM + ERS   L  L+ +
Sbjct: 676 QVAVNVSAVQLSRGKLVESVKDALQETGIAPGMLELEITESSVMLDRERSLETLASLKAL 735

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ L++DDFGT  S L+YL  +  D +K + + +          AI++++I +  ++   
Sbjct: 736 GVQLSIDDFGTGYSSLAYLQQLEVDKLKIDIAFVRDMTTNSNNAAIVKAVIALGHSLGLE 795

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           II + +      + L  + CD +Q   V+ P+    + + ++   P+V
Sbjct: 796 IIGEGVETADQARHLRTLRCDIMQGYMVSRPIPGAEMTQFMRTFKPVV 843


>gi|117921369|ref|YP_870561.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117613701|gb|ABK49155.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1009

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 149/556 (26%), Positives = 255/556 (45%), Gaps = 10/556 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T       I G +   + G     L Y  +N
Sbjct: 451  IEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTAITGYSESEIRGQHIRLL-YCDLN 509

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                +  + +      +G  Q E R R  +N+ + + + I  + + +G   R + + +DI
Sbjct: 510  GHGFYTEMNNEIRE--KGEWQGEMRQRRKNNEEYVIWLTINTIKDKDGQPYRRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K+S   I   A  D LTG+PNR+  L+ L   +  +  + N    +M +D+D +K++
Sbjct: 568  TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKSADRNRN-HFALMFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S  +   I   A  + +
Sbjct: 627  NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMVDHKGIERVAEHILR 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RIAEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV + E  L Y PI+ +   E++  EAL++W HP+ G +S +EF
Sbjct: 747  QEYAKYRMRLIQDLRQAVVSKEFELHYQPIVTMTTGEVLKAEALLRWFHPERGYVSPAEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR    WR       I I +N +     D   L      
Sbjct: 807  IPVAEDTGLIVEIGNWVFEQAARQSALWRKTFG-VDIQISVNKSPIQFRDEGTLLHNWLE 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+ K   + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLQKLDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 926  DIDYLKIDQSFTRNIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLTAGCDY 985

Query: 935  IQDSHVASPLGFNSIL 950
             Q    + P+      
Sbjct: 986  GQGYLFSKPVSATEFA 1001



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+       V A     + + +  E+  L +  S   VWDWDI  D +      A ILG 
Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGC 365

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R++  +    W++   +
Sbjct: 366 DIDMLNANSRQWMDSIVAEDRPKVLHSIEAHIRGETLQHKMEYRLKTLNRDIRWILDTGK 425

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 93/318 (29%), Gaps = 12/318 (3%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286
           V  Y +I      +   L    + +      + + S+  ++              V  + 
Sbjct: 20  VFLYDAIPKKHQRQYFLLWRLGIGLLIGGIGVTIMSTPWMYEPGIIFDTRSVLLCVTGLF 79

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           F G+     +   + Y   +  +   + L  I+      +I+   +    A +       
Sbjct: 80  FGGLPTAIAVVMTAIYRISIGGAAMWVGLGVIISSGLIGVIWRQQRKSYLANISGREIFS 139

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL------IGFTVIQHVLATGYFSQGI 400
                  + +     L + +  P L   ++ ++ +      +   ++          Q  
Sbjct: 140 FAFVVHIVMLLWFFLLPDKVAIPVLQKIMLPVLTIYPLATWLLSRLLSRRFELERDEQIR 199

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             D              +    + +  +   P +  +L  +   +      W    H +D
Sbjct: 200 LQDDFLFRSQFNVGNIGIAITGVDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHPDD 257

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +      +  +  +    + + R  A DN   +  + +     +N  +L  I    D+T
Sbjct: 258 VEADIVKFELMLAGKIDNYEMDKRFIAKDNSIVYTHMTVAC-KRANHQVLLVIAGYLDVT 316

Query: 521 EQKKSLEGILCNAFQDNL 538
            Q  +L      A ++ L
Sbjct: 317 AQ--TLADREVLASREQL 332


>gi|289677665|ref|ZP_06498555.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 639

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 148/624 (23%), Positives = 277/624 (44%), Gaps = 19/624 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394
           +  + + +        L   +       + Q  +  G VL+  ++ F     + A     
Sbjct: 14  LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWVLLSTVMIFIARDRLKAIVGGE 73

Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133

Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    H           L S      G+   E   R    + +     IR +   +G  
Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 188

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++
Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 247

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D ++ IND LG  +GD+VL +   R+  L      +ARL G+ F +++ +  + + 
Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLKALADSGMTVARLGGDEFALLVKNCKHMVH 307

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  +   P  +   ++ V+ASIG + +    +T+ ++L+NA+ A++ AK  G 
Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVSASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     +    RV +  +L  A+E  +L + Y P+  L+   I  +EAL++W HP
Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHP 427

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  +F+ IAE+  +I  I+ ++L    R + +W  +       + +N++S+    
Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  
Sbjct: 487 GDVDRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I       
Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q    A P+   SI
Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630


>gi|77918660|ref|YP_356475.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544743|gb|ABA88305.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 734

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/592 (23%), Positives = 272/592 (45%), Gaps = 20/592 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L+ + V+ H+L +    + +     R SLA   +    W ++        +  + ++L 
Sbjct: 117 LLLRYRVM-HMLRSARLCEDLRVSQARISLAQRIAHLGHWHFNFKTKDFVCSDAVLSLLD 175

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                      + L  IH +D+   +  L++ +   R   Q  +R+     +   +  + 
Sbjct: 176 RRDDISVHNPESLLRNIHPDDKPRVQAALENAI-GNRQPYQENYRI-NVQGEERRINSQG 233

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              +N NG+     GI  D+T+   + + I   A  D LTG+  R+ F+++L   + L+ 
Sbjct: 234 EIQTNGNGEPEAITGIIQDVTDIYHAEQKIFRLAHFDALTGLAKRKFFMEKLAEAVFLT- 292

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-----------FPDI 608
              + +  VM++D+D++K+IN+ LG   GD +L  + +RI   L+               
Sbjct: 293 EHGHGQLAVMILDLDRFKRINENLGHVPGDQILRKMAKRIQRSLQQCHVLYPSSLTEDHC 352

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +AR  GN F I+L    ++ ++   A  + K IA P      E+ +T SIG   +     
Sbjct: 353 IARFGGNEFAILLPEVQDTHQVNRIAGHLLKDIAQPFTFDNCEVLITTSIGICLFPEGSD 412

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHP 726
              ++++NA++A+  AK +G +    +  S  +   DR++++ DL  A++N E  L + P
Sbjct: 413 DQQDIIRNADIALRQAKSQGRDTFRLYHPSMGKPTQDRLILENDLRNALKNDEFVLYFQP 472

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + +   +++G E LI+W HP+ G      F+ +A E  +I  I+ ++L +    I  W+
Sbjct: 473 QVDIRSGQLLGAETLIRWQHPQQGLKLPGAFLPLALESGLIIEIDQWVLRQACAQIARWQ 532

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  + + +N++ +      +   +  ++ ++      +++  +E+ +M N  ++  
Sbjct: 533 AAGYD-KLRLSVNVSGQLFAQEGVAALISDIVRQSGIPTGALEIELTENTLMQNNAQTIS 591

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            L  L+++G ++ +DDFGT  S LSYL   P DT+K + S +         IAI R+II 
Sbjct: 592 TLTDLKQLGTNIAIDDFGTGYSSLSYLKNFPIDTLKIDRSFIRDLENAPGDIAITRTIIA 651

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +N+  T I + I        L  +GC   Q    A P    +    L ++
Sbjct: 652 LGENLGLTTICEGIETHQQKDLLVDLGCYIGQGYLFARPENLEAFSLRLAQQ 703


>gi|170720732|ref|YP_001748420.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida W619]
 gi|169758735|gb|ACA72051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida W619]
          Length = 1098

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 146/583 (25%), Positives = 267/583 (45%), Gaps = 18/583 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
              T ++ +         + S  E+ + A   S D +   +    R V        + G +
Sbjct: 515  SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYVEVNDGFCRLTGYS 574

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     L  I  +D+    + L   +  R      E   R        + + + P
Sbjct: 575  TAEVIGHSVYEL-GIWADDKQR--SALLVELKERGRVHHREMLGRTKRGDILTVEVSVEP 631

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  S  +    +  A D+++ K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 632  I--SLNETDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLRRH 689

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 690  -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        K+ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 749  SGLEGSREAVENKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMESDLRLALARGELALHFQPQVDARDNR 868

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP+ G    ++F+ + EE  +I  +  ++L+                  
Sbjct: 869  IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACSRMLTDGLIDAD 928

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    N+  + +   +         +KL  +E +V+ N E +   +  L+
Sbjct: 929  DFSLCVNISPRQFRQNDFVQRVLRSLDDYRLPRHMLKLEITEGIVIQNLEDTISKMRELK 988

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + + +  +        I+R+I+ MA++++
Sbjct: 989  RHGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQTFVRDAPVDSNDAEIVRAIVAMARSLD 1048

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+ +     ++ L R+GC   Q    + PL      ++L
Sbjct: 1049 LAVIAEGVELTEQLEFLERLGCHLYQGYLHSRPLPLPEFRQML 1091



 Score =  111 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 55/157 (35%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 250 TQGIELEGVTFLLSTFVDTSERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GL     H     +   +  ++RD  R    S      G  Q  +RV+  +  
Sbjct: 310 ARAAQLHGLDPIPFHESFDAFFEGVPQDERDGMRQAYRSLREGPEGNYQITYRVQLENGA 369

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   +  G+ LR  G   DIT+Q +    
Sbjct: 370 SRYIESRARLYRDEQGNPLRMAGTLLDITDQVERELR 406



 Score = 95.8 bits (237), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 1/133 (0%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A    S+  + +  +   A+ G+    W WDI   RV+ +     + G           +
Sbjct: 17  ANPQESEQAWQNAPQLLAALNGARLGAWLWDIDSGRVSWSRGTQALFGFDPQRPLPNDID 76

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +L  +   DR   R +  + V           R+R  D   HW+ I      +  G    
Sbjct: 77  YLDLLPEEDRARTRQLFQAVVNGEPAEKAMRHRIRWPDGSLHWLEINGSLTHDRQGRPQ- 135

Query: 512 YIGIANDITEQKK 524
            IGI  +IT Q++
Sbjct: 136 MIGIIREITRQRE 148



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442
             +I+ +         + +  +R +     S + +         +         + G   
Sbjct: 137 IGIIREITRQRERETALINSEKRFATLFHLSPNAILLTRRQDGMIFEVNQHFEDMFGWPG 196

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G     L   +    R        S      G    E ++RA+  + H  I+  + 
Sbjct: 197 EQVIGKTSLELGLWVTPEQRHQVLDSTRS----SSGPTIMEVQLRASSGKIHDGILCTQG 252

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +      +   +    D +E+K++       A +D+           +RL   LD + 
Sbjct: 253 IELEG--VTFLLSTFVDTSERKRAE-----QALKDS----------QERLDLALDSAQ 293



 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 23/170 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +         + +  E+ +     S D +        + +   P      G ++
Sbjct: 391 AGTLLDITDQVERELRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTHTFGWSA 450

Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             + G        W   I     +  + I           +     V   +      +I 
Sbjct: 451 EQVIGRTAEKIGLWAESI-----ERAQRIERVIREQALSNVAVV--VNHRNGSPLTCVIS 503

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539
            R + + +      +    DIT+Q+++       E     AF    D +T
Sbjct: 504 SRLI-SVDNHPCS-VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551


>gi|95931184|ref|ZP_01313906.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132746|gb|EAT14423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 951

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 151/602 (25%), Positives = 278/602 (46%), Gaps = 26/602 (4%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              ++G  V+I  +I + V + V       +        + L +  +GD +   D     
Sbjct: 360 AYVVLGLFVVIGAVISWLVRRQVRQMFLLQRD-------KELILNAAGDGIVGVDRTGRA 412

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--- 484
               P  A +LG  +             + + + ++           R+       R   
Sbjct: 413 SFVNPAAARMLGYDAEDFLRRYVVETIPVVLANGEHVMEQDHPISQTRQLEQGLCVRSDL 472

Query: 485 --VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQ 535
              R  D     +     P+  S G     + I  D+T Q+++ E +          +  
Sbjct: 473 DAFRRRDGTIISVEYVATPLIGSAGQHEGAVLIFKDLTRQQQAEERLEEKKQLLDHMSNH 532

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+PNR+ F DRL   ++ +    +   +V+ ID+D++KKIND LG  +GD +L+S+
Sbjct: 533 DSLTGLPNRRLFQDRLYHAIERARRSSS-EMSVLFIDLDRFKKINDSLGHELGDKLLISV 591

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            RR+   L+  D LARL G+ F +IL   ++S   A  A  +   ++   ++    + VT
Sbjct: 592 ARRMQSHLRRSDTLARLGGDEFVVILEESSHSHFAAVIARNLLNELSEAFDVESHRLFVT 651

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713
           ASIG + +         ++ +A+ AMYHAK RG N+ + +         D + ++  L  
Sbjct: 652 ASIGISRYPYDAEDVVGLMSSADAAMYHAKSRGRNNFQFYAPEMNGRAQDFLEMETQLRD 711

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   +  + Y P   + D+ +VG EAL++W+HP+ G +   +F+ +AEE   I  I  +
Sbjct: 712 ALALEQFEVYYQPQYDMRDQTLVGAEALLRWNHPERGMVPPGDFIALAEETGAIVPIGEW 771

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L ++ R    W D+    P+ + +NI+        L + ++ ++ ++      ++L  +
Sbjct: 772 VLMQVCRQNRQWMDEGL-TPVRVAVNISIAQFRS-NLSQTLEQVLEQSGMPAELLELEIT 829

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
           ES++M + E +  LL  L++ G+ +++DDFGT  S LSYL  +P D +K + S +     
Sbjct: 830 ESMLMEDEEETITLLNELKEKGLHISIDDFGTGYSSLSYLRKLPVDKLKIDRSFIAHVVH 889

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +   AI  SII + +N++  I+A+ +  E     L +  C   Q    A P+     ++
Sbjct: 890 NQSDAAITGSIIALGQNMDLRILAEGVEHEEQRDFLLQHRCYIAQGFLYARPMTAEDFVR 949

Query: 952 LL 953
           LL
Sbjct: 950 LL 951


>gi|117918886|ref|YP_868078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117611218|gb|ABK46672.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1487

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 268/566 (47%), Gaps = 12/566 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +    + A   + + V   D+  +          I+G     + G   +    
Sbjct: 924  LQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHDLVGQSFSQFVQ 983

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +    +D   T +   +  +      E  +   +     + + +  M +++   + Y+ +
Sbjct: 984  M----KDGLSTEVHQLL-GQDSSWTGERELVGQNGLVCPVWLNVSVMQSASDSSVHYVIV 1038

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D+
Sbjct: 1039 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQTAQQTGE-KLALLFLDLDR 1097

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + NN  +I   A 
Sbjct: 1098 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAE 1157

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + +
Sbjct: 1158 RLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYY 1217

Query: 696  --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                ++     + ++ DL  A+E  E  L Y P I +   ++ +G+EALI+W HPK G I
Sbjct: 1218 SSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYI 1277

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                F+ +AE   ++  I+ ++  R   D   W  +    P  + +NI++      +  E
Sbjct: 1278 RPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCAA-PFKLSVNISAVHFRQPDFIE 1336

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G++ +++ T    S + L  +E V+M   + ++  L +L+++GI + +DDFGT  S L+Y
Sbjct: 1337 GLKKILADTQMPTSSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAY 1396

Query: 873  LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L +   +T+K + S +          AI+ SII +A+N++ T++A+ +     ++++   
Sbjct: 1397 LRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSR 1456

Query: 931  GCDYIQDSHVASPLGFNSILKLLKER 956
            GC  +Q  + A P+      + L ++
Sbjct: 1457 GCYIVQGYYFAKPMSVTEFERYLLQK 1482



 Score =  102 bits (254), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + V      +Q +    +R   ++ GS   +W+W         
Sbjct: 775 LLLIFSIIALSLAWYRQRQVRTFMTMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYL 834

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  +   +      +H  DRD      +S +     R + E+R +    
Sbjct: 835 DNR-GAVLGNHANEIVVTLETLP--VHPEDRDKALGQWNSMLAGEIDRFEAEYRYQRRSG 891

Query: 491 QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP+S +    +I R  GI +DIT Q++  + I   A
Sbjct: 892 NWGWLRVRGRPVSRNRTTHEIERVAGIYSDITLQRQLEDEINLLA 936


>gi|330823090|ref|YP_004386393.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329308462|gb|AEB82877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 888

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 136/566 (24%), Positives = 266/566 (46%), Gaps = 15/566 (2%)

Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
           + +  ERQ LA   +  + + V   D     ++  P +  +LG     + G   R +   
Sbjct: 328 LRTAEERQRLASTVLDNAVEGVVVADAHARILSINPVVTRVLGYTEEELLGRNPRVFQSG 387

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D+  + T+ ++    R G  Q E   R  + +     + +  + ++ G +  Y+ +
Sbjct: 388 RH--DKAFYETMWEAVR--RTGHWQGEIWNRRKNGEIFPERMSLSAVRDAQGAVTHYVCM 443

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +DI+++K   + +   + +D+LTG+PNR  F+++L   L  +      +  V+++++D+
Sbjct: 444 FSDISQEKAQHQRLEFLSHRDSLTGLPNRAWFVEQLGQALCQAQVHGE-QMAVLLLNLDR 502

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G AVGD+VL  +T ++   L+  D++ R++G+   ++  +  +S   A  A 
Sbjct: 503 FKDVNDSYGHAVGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQ 562

Query: 636 AMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            M  + + P       E+    S+G + +     T+ ++L+ A  A+Y AK RG      
Sbjct: 563 YMIAAASKPWRTPDGIEVVAGVSVGISMFPEHARTAEQLLQGAHSAVYGAKARGRGAHCF 622

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S      +R+ I+  L  A+    L L Y P + +    IVG EAL++W  P+ G I
Sbjct: 623 FDESMIQAARERLEIEARLRSALAQGHLRLYYQPQVDIATGRIVGAEALLRWLDPEEGVI 682

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+ +AE   +I  +  ++++        WR     P I + +N++       ++  
Sbjct: 683 SPARFISVAETSGVIGPLGRWVMQEACSQGQRWRAAGL-PGIRLAVNVSPYQFQLTDVAA 741

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                +  +   P  ++L  +ES +   PE  R +L RL+ +G+ + +DDFGT  S L++
Sbjct: 742 CAAQALEDSGLPPHCLELELTESALAERPEAMRQVLQRLQALGVRIAVDDFGTGYSSLAH 801

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K +   +     +   +AI  +II M +++  T++A+ +     +  L   
Sbjct: 802 LKRFPIDALKIDQGFIRDIPSSADDMAISATIIAMGRSLGLTVLAEGVETPEQLAFLRAR 861

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD  Q    + P+       LL+ +
Sbjct: 862 GCDSYQGYLCSRPVPAEQFGALLQAQ 887



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +        LA+ GSG  +WDWD+ + R+T +  +  +L      +     N L 
Sbjct: 203 AARAALARSENILRLALDGSGSGMWDWDLAQRRITGSQGLLRLLRYRGAEL-PRGLNLLR 261

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H  DR      +   +    G      R++  D  + W   R +   ++ G   R+ G
Sbjct: 262 RVHPEDRHRLHRAVQRAIAA-GGSFDETARLQRFDGSYCWFQARGQCHRDAQGRPERFSG 320

Query: 515 IANDITEQKKSLEGILCNAF 534
           I  D+T+ + + E     + 
Sbjct: 321 ILADLTDLRTAEERQRLAST 340


>gi|228988525|ref|ZP_04148613.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228771205|gb|EEM19683.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 891

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 173/868 (19%), Positives = 349/868 (40%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 34  SYILYFSNMKEGLPRLFWTILSVGTLSYFIGDIVVTYQRLILKDYYTF---VDPSD--FF 88

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
            +           L+E    +D +    +   I I    + A F   +Y++   ++ I +
Sbjct: 89  YLLFLISFAFAF-LYEIIHNRDLLEKLFMICDICI---IVTAQFTLSYYLLIERTIHISS 144

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  F    +NL    L +        L S+LI++      Y +  
Sbjct: 145 TSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 204

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T + +  + ++               +  +           +         
Sbjct: 205 YFIPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 264

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   M       + + +++      L+  V        Q  L T 
Sbjct: 265 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQVQFNSELEKQIELRTE 324

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 325 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 382

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    +  D +            +   +  E R    +   +++ +   P+   N  I  
Sbjct: 383 YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 439

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM +
Sbjct: 440 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEIS-KVPFAVMFL 498

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 499 DLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVK 558

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N 
Sbjct: 559 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 618

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL LA+   E YLVY P I +  ++I+G EAL++W HP  
Sbjct: 619 SSLYTKELYKKMERKARIEKDLPLALVKEEFYLVYQPQIDISTKKIIGAEALLRWKHPLL 678

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   N 
Sbjct: 679 GDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQNN 737

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +  +I+     P  + L  +E + M + + +   L +L++ GI   +DDFGT  S 
Sbjct: 738 LIKNILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTAIDDFGTGYSS 797

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 798 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 857

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL  +  +K L++
Sbjct: 858 QKNNCKYMQGYYFSKPLTSHQFIKFLQK 885


>gi|89902813|ref|YP_525284.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89347550|gb|ABD71753.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1052

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 138/574 (24%), Positives = 254/574 (44%), Gaps = 18/574 (3%)

Query: 394  GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRN 451
               +Q   ++ E R +     S   +   D     +      + I G ++    G   R 
Sbjct: 484  ADITQRRQTEAELRIAAIAFESEQGMAITDPQGVMLRVNRAFSAITGYSAPEAVGQNPRL 543

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                 H  D   +  + DS V  R G  Q E   R  + +     + I  + +  G    
Sbjct: 544  LSSGRH--DAAFYAAMWDSLV--REGAWQGEIWNRRKNGEVFPEWLTISAVKDPAGQATH 599

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            Y+    D++ +K + + I   AF D LTG+PNR+  LDRL   L   A     +  ++ I
Sbjct: 600  YVATFTDLSTRKSAEDQIKSLAFYDTLTGLPNRRLLLDRLKQALASGARHRR-QGALLYI 658

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-----SENN 626
            D+D +K +N+  G  VGD +L  + +R+   L+  D +AR  G+ F ++L      S   
Sbjct: 659  DLDDFKTLNNTYGHDVGDQLLQEVAQRLSHYLRAGDTVARPGGDSFVVLLEALSTNSVEA 718

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAK 685
            + +  +    +R +++ P  + +     TASIG   +    +    E LK AELAMY AK
Sbjct: 719  ATEAENTGEKIRLALSQPYQIADHAHRSTASIGVTLFDDRQQEGIDEPLKRAELAMYQAK 778

Query: 686  HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G N +  F             ++ DL  AV +++  L Y   +     ++ G+EAL++
Sbjct: 779  TAGRNTLRFFDPQMQTAVMAMAALEADLREAVRSNQFLLYYQAQVSGE-RQVAGVEALVR 837

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP  G +  +EF+ +AE+  +I  +  ++LE     + +W  Q     + + +N+++ 
Sbjct: 838  WQHPVRGLVPPAEFIPLAEQTGLILPLGQWVLETACAQLAAWASQPERAHLTVAVNVSAL 897

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 +    + A + +   +P R+KL  +ES+++ + E     +  L++ G+  +LDDF
Sbjct: 898  QFHQADFVAQVLAALKRAGANPQRLKLELTESLLVHDAEDVIAKMITLKEQGVGFSLDDF 957

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P + +K +   +          AI + ++ +A  +  ++IA+ +  E
Sbjct: 958  GTGYSSLSYLKRLPLNQLKIDQGFVRDILHDANDAAIAKMVVALADTLGLSVIAEGVETE 1017

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 L   GC   Q    +  L  ++    +++
Sbjct: 1018 AQRDFLAAQGCHAYQGHLYSRALPIDAFEAFMRQ 1051



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 78/249 (31%), Gaps = 22/249 (8%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           +  +G    A+L     + P+       +   S++      +++  +K    A LL  A 
Sbjct: 274 LPAAGWVLAAVLPTAEAFAPVRAMQQRMLLATSLLTLLAGLVVWWTIKRQL-APLLATAR 332

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
            L  +      +        D I   + G   L+                     +    
Sbjct: 333 RLAAMADEKQALRALPVTHPDEIGQVVKGFNRLLG-------------------TLGQRE 373

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
                 +  S   ++  D           +AT+ G     + G    ++  +H   R+  
Sbjct: 374 ALLQQILDTSSVAIFLVDRQGRITKANQRMATLFGYPLHELQG--MEYVALVHPAQRETG 431

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R  + + +      +  E     AD    W  +  +   + NG+    +G+  DIT++++
Sbjct: 432 RKNMLALLDSALQSVDLERLYWRADQTEFWGHLTGQRFVDGNGEEQGLVGVIADITQRRQ 491

Query: 525 SLEGILCNA 533
           +   +   A
Sbjct: 492 TEAELRIAA 500


>gi|332558451|ref|ZP_08412773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides WS8N]
 gi|332276163|gb|EGJ21478.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides WS8N]
          Length = 830

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 141/589 (23%), Positives = 256/589 (43%), Gaps = 21/589 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F +I+ V       + +     R       +  ++W  D     V  +       G +  
Sbjct: 242 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWVTDTEGRNVFVSRSWLGATGQSLD 301

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  +H +DRD    I    +  R      EFR+R  D  + W+I    P  
Sbjct: 302 EALGT--GWIDAVHPDDRDATAAITRDAMRRRIA-YTNEFRIRRKDGGWCWVIDVGHPRL 358

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            ++G  + YIG   DI+ ++++ +        +   A  D LTG+PNR  F D     + 
Sbjct: 359 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 417

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            ++        V+++D+D +K +ND  G  VGD VL  +  R+   ++  D +ARL G+ 
Sbjct: 418 -ASLAPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 476

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +I     +  +  D A  +  +I+ P +L      V AS+G A       ++ E+++ 
Sbjct: 477 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRY 536

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G      F     +    R  +K  L  A+   EL + Y P+I L D +
Sbjct: 537 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 596

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W     G I+  +F+ +AEE  +I  +  ++L         W D      +
Sbjct: 597 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGDWVLHEACAQAARWPDS-----V 651

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++        L + + + +  +   P R++L  +ESV++   +R+  +L  LR +
Sbjct: 652 SVAVNLSPLQFHGGALVDQVASALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRAL 711

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G  + +DDFGT  S L YL   PFD +K + S +    + R   AIL+++  + ++++  
Sbjct: 712 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLDMR 771

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              + +  +  +      G D  Q    + PL    I   +    P  +
Sbjct: 772 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 820



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +      G  L+V     T ++           +          +       + +  
Sbjct: 101 RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 154

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                  +  +  I GL +G+    +  W   +H  DR + R      V   +     E 
Sbjct: 155 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPGDRRDLRRAWIRSVRGGQ-SFDAEH 211

Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           R++  D  + W   R+     + +  + R+ GI  D+ E++ ++E + 
Sbjct: 212 RLQMPDGAYRWFRARVVARPRDQDQQVDRWFGIIEDVHERRTTVEQLR 259


>gi|254457729|ref|ZP_05071157.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086521|gb|EDZ63805.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 595

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 147/583 (25%), Positives = 270/583 (46%), Gaps = 34/583 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT--ILGLASGSMHGPIRNWLPYIHIN--- 459
           E   L      D++W  D+    +     I    ++   +    G    +          
Sbjct: 14  ELLKLLTQQLPDMLWVKDLNGKYLYANKAICDGLLMAKDTDEPIGKGDVFFALREREANS 73

Query: 460 DRDNFRTILDSFVGYRRGRLQ-------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           D+ N+ T  +      +  ++        E+       +  ++ +   P  + +G  +  
Sbjct: 74  DKLNWHTFGELCFNSDQVVIENGEAMKFEEYGNVK--GELLYLEVYKAPFYDEDGKTIGT 131

Query: 513 IGIANDITEQKKSL--------------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +G   DIT  KK+               E +   A  D+LT +PNR  F+DRL   ++++
Sbjct: 132 VGAGRDITNLKKTQLDLEKNLKILDEQREQLEYQANHDSLTDLPNRVLFMDRLQQSINIA 191

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              DN +  ++ ID+D +K+IND LG  VGD VL+ ++RR+   ++  D L+RL G+ F 
Sbjct: 192 QRYDN-KVALLFIDLDHFKEINDSLGHGVGDKVLIEVSRRMKNQMRKSDTLSRLGGDEFC 250

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           IIL    +   ++D   +  +++  P+ +    + V  SIG + + +   ++S +LKNA+
Sbjct: 251 IILNDIIDIEDMSDIITSGMEALKEPMEINGHTLYVGMSIGVSVYPNDGNSASSLLKNAD 310

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N    +  +          ++  L  A+E  EL + + P I   + ++V
Sbjct: 311 AAMYKAKGDGRNTYCFYDEAMTERAFERVFLETALRKALEEDELVVYFQPQIDARENKLV 370

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL++W+HP  G I   +F+ +AE   MI  ++  ++++       W      P   +
Sbjct: 371 GMEALVRWEHPIMGFIYPDKFIPLAEITGMIVQLDRLVMKKALTQFKKWDKAGLNPG-KL 429

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+A K + +N+  E ++ ++     S   I+   +E+ +M NPE S   L +L  +GI
Sbjct: 430 ALNLAIKQIEENDFIEFIENILDCEDCSYKNIEFELTENQIMNNPEASIETLQKLSDLGI 489

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           S+ +DDFGT  S L+YL  +P D +K + S +          AI ++II +  ++   +I
Sbjct: 490 SIAIDDFGTGYSSLAYLKRLPIDKLKIDRSFIKDLPQDADDAAITKTIISLCSSLNLKVI 549

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +  E     + + GC +IQ  + + PL    + K L E  
Sbjct: 550 AEGVETEKQKNFILQNGCQFIQGYYYSRPLSIEDMTKYLIEHN 592


>gi|119947315|ref|YP_944995.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119865919|gb|ABM05396.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 727

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 148/568 (26%), Positives = 270/568 (47%), Gaps = 17/568 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +   L +  + + +   D +       P    +L     ++ G     + Y HI
Sbjct: 141 ELKRVKDHNELLLKSTAEGIISLDPMGKINFANPAAKQLLMYNDDTILG-----IDYAHI 195

Query: 459 NDRDNFRTILDSFVGY-----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              DN  +       +     +R     +      D     +     P+  +N +    +
Sbjct: 196 QGTDNLTSPFKDCALHHTALSKRIIHDDQQSFHCFDGSSFPVEFTASPICKTNSESSGIV 255

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DI+E+KK+ + +   A  D LTG+PNR  F   L+  +  S    N +  ++ +D+
Sbjct: 256 LVFQDISERKKTEQQLTRLAQYDCLTGLPNRALFTSLLSQAISRSDRRKN-KLALLFLDL 314

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIAD 632
           D++K++ND LG  VGD +L  + +R+         ++RL G+ F +IL   N+   K A 
Sbjct: 315 DRFKQVNDSLGHDVGDLLLQQVAQRLQLATLEGGTVSRLGGDEFMVILEEVNSESHKAAK 374

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  M  S+  P N+L RE+ ++ SIG A  + S      +LK A++AMY AK +G N+ 
Sbjct: 375 LAQKMITSLDAPFNILGREVLISTSIGIALCSGSTQCIDSLLKRADMAMYRAKEQGRNNF 434

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +        S  + ++  L  A++  E +L Y P +     +I+GLEAL++W      
Sbjct: 435 QFYTAELQQQASKSIELENRLRHALQRKEFFLHYQPQVDTNSGQIIGLEALLRWQPDGQA 494

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNE 809
            IS  EF+ +AEE  +I  I  ++L      +  W     + P + + +N++ + L    
Sbjct: 495 LISPEEFIPVAEEAGLIVPIGEWVLREACSQLHRWHRSGLLSPTVKMAVNLSVRQLEHTS 554

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++ +T   PS+++L  +E+ VM +P+    +L  +  +GI L+LDDFGT  S 
Sbjct: 555 LLSTLTQILQETGLKPSQLELEITETAVMKDPDLVVNILHSIHAMGIQLSLDDFGTGYSS 614

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P   +K + S +      ++  AIL SII +++N++ T++A+ +  +  +  L
Sbjct: 615 LRYLKLLPLHVLKIDRSFINDIGGKQRDQAILESIIYLSRNLDLTVVAEGVETQEQLDFL 674

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +R  C  IQ  +++ P    +I KLL +
Sbjct: 675 SRFNCHSIQGYYISKPKSAANIEKLLHK 702


>gi|119897648|ref|YP_932861.1| EAL/GGDEF/PAS/PAC-domain-containing signalling protein [Azoarcus
           sp. BH72]
 gi|119670061|emb|CAL93974.1| EAL/GGDEF/PAS/PAC-domain containing signalling protein [Azoarcus
           sp. BH72]
          Length = 947

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 150/610 (24%), Positives = 261/610 (42%), Gaps = 18/610 (2%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG--------YFSQGIFSDGERQS 408
               RL+  ++  A+   + +IV L   + I    A+            +    + +  +
Sbjct: 330 TARHRLEFTLLLLAVASTVAVIVSLAFSSWIGRRFASYRGEIAQRNAALEAKNRELQLAA 389

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                  + +   D     +T     A + GL + ++ G     L   H  D   +  I 
Sbjct: 390 RVFECGNEAMMVLDADHRFITVNSACAQLAGLDAAALRGRPAAQLLNDH--DGAGWERIA 447

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                   G    E  VR  D       + +  + NS G    Y+G   D++  K++   
Sbjct: 448 RELAEQ--GAWSGEVTVRREDGPTLPAQLSVSAVLNSAGGATHYVGALTDMSAHKQTEAL 505

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR    DR    +  +A  D L   ++ ID+D++K +ND LG +VG
Sbjct: 506 LRHMAEYDALTDLPNRSLLHDRARAAIQGAARTDRL-AALLFIDLDRFKNVNDSLGHSVG 564

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L    +R+  LL   D +AR  G+ F ++L    +    A+ A  +  + + P  + 
Sbjct: 565 DALLRQAAKRLASLLHGGDTIARPGGDEFVMLLAEITDRAVAANRAAQIIDAFSTPFRVE 624

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
             E++VT SIG A      + +  +L+NA+ AMYHAK  G N    F         +R+ 
Sbjct: 625 HYELSVTPSIGIAIAPDDGVDADTLLRNADAAMYHAKESGRNTYRFFTDEMSLRVRERLE 684

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+   E  + Y P   L D  I+G EAL++W HP+ G I+   F+ +AE+  +
Sbjct: 685 LENLLRQAMSRDEFEVFYQPQFGLSDHRILGCEALVRWRHPERGLIAPERFIPLAEDTGL 744

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I AI   +LE        WR       I + +N +   +      E +  ++++T     
Sbjct: 745 IVAIGRRVLETACHTAQGWRAAGLG-DIPVAVNASPVQIHHGNFAETVAEVLAETGLPAR 803

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  +ES +M +       L  L+ +G+ L +DDFGT  S L+YL     D +K + S
Sbjct: 804 LLEIELTESTLMADAAPVAATLAALQDMGVRLAIDDFGTGYSSLAYLKRFQLDKLKIDRS 863

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           I  +II +A+++  ++IA+ +      + L   GC   Q    + P+
Sbjct: 864 FINDLPGDPDDANITVAIIGIARSLGMSVIAEGVETAAQERFLVDQGCAEGQGYLFSPPV 923

Query: 945 GFNSILKLLK 954
              S+  LL 
Sbjct: 924 PVESMTALLA 933


>gi|327440733|dbj|BAK17098.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 582

 Score =  529 bits (1363), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/576 (24%), Positives = 272/576 (47%), Gaps = 14/576 (2%)

Query: 387 IQHVLATGYFSQGIFSD---GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  + +     Q +       E          + +   D  R  ++       + G    
Sbjct: 1   MSELKSNRSIMQELALSQFPKELIERVFENIAEGIMITDRYRRILSINVAFEFVTGFKLE 60

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G         +H  DR  +  +       + G  Q E   R    + +   + I  +
Sbjct: 61  EVQGEKPSILQSGVH--DRAFYIDMWKQI--GKTGIWQGEIWNRRKTGELYPEWLTILAI 116

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATD 561
            +  G I  Y GI  D++E+K   + +   +  D+LT + NR ++++R+  +L+      
Sbjct: 117 KDEAGKITNYCGIFTDLSERKIVEDELEKRSLHDSLTEVCNRFAYIERMKALLEVTENQM 176

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             ++  V+ ID+D++K++ND+LG A+GD +L+ +++R+  L+K  DILAR  G+ F I L
Sbjct: 177 TPIQHAVLFIDLDRFKQVNDMLGHAIGDQLLIEVSKRVKALVKNKDILARFGGDEFVITL 236

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +  +  + A FA  + +    PI + ++++ ++ S+G + + +   T+ ++L  A+ AM
Sbjct: 237 ANIQHPREAAKFAEQVLRVFEAPIKVHDQDVYISTSMGISIYPADGTTTEQLLNRADRAM 296

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             +K  G N    +     +  +  + +  +L  A+EN E  L Y P I     EIVG+E
Sbjct: 297 SFSKDNGRNCYSFYFDELETDSNRVLTLDSELRKAIENREFTLAYQPKISTEKNEIVGIE 356

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+  K G +S +EF+  AEE  +I  ++  + E               P + I +N
Sbjct: 357 ALVRWNSEKLGFVSPAEFIEHAEESGLIIPLSELIFELACEGYHQLVSA-GYPNVPIAVN 415

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++S         + +Q ++ +   S    ++  +E  VM + + +   L +LR++G  L+
Sbjct: 416 VSSIHFQQQSFLDSVQTILERNNTSAQSFEIEVTERTVMNSAQETVSKLVKLRQLGFKLS 475

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      + + AI+ +II MA  ++  ++A+ 
Sbjct: 476 IDDFGTGYSSLSYLVRFPLDVLKIDRSFIQHICSLDDKQAIVDAIIQMAHRLKMKVVAEG 535

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +     ++ L  MGCDYIQ  + + PL    ++  +
Sbjct: 536 VETSQQVELLKSMGCDYIQGYYYSKPLPMEELIDFI 571


>gi|91786338|ref|YP_547290.1| diguanylate cyclase/phosphodiesterase [Polaromonas sp. JS666]
 gi|91695563|gb|ABE42392.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Polaromonas sp. JS666]
          Length = 989

 Score =  529 bits (1363), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/542 (26%), Positives = 249/542 (45%), Gaps = 14/542 (2%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             V          G     +   +   L       R +    + S +   + + + E  +
Sbjct: 453 QIVFVNDAFERHTGYTRDEVLSRMPGMLQG--PGTRQDELARIFSALQQWK-QARGELVI 509

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D    W+ + I  ++  NGD+  ++ +  DIT++K + E I   AF D LT +PNRQ
Sbjct: 510 YRKDGGSFWVDLEIVSVAAQNGDLTHWVAVGRDITQRKAADEKIHHLAFYDPLTELPNRQ 569

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             LDRL   L            +M ID+D +K +ND +G + GD +L  +  R+   ++ 
Sbjct: 570 LLLDRLEQALADCTITRQ-EGVLMFIDLDNFKILNDTVGHSKGDLLLQKVAVRLKGCVRK 628

Query: 606 PDILARLSGNRFGIILISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGF 660
            D +ARL G+ F ++L       + A       A  +  ++  P +L   +   T+SIG 
Sbjct: 629 LDTVARLGGDEFVVMLQDLGTQPEAATRKAQIVAEKVLATLREPYDLAGYQHYSTSSIGV 688

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENS 718
             + + + + SE+LK A+LAMY AK  G N V  F      S      +  DL   +   
Sbjct: 689 TPFNARQGSVSELLKQADLAMYQAKTMGRNTVCFFDPDMQASVSANAALSTDLRAGLREH 748

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +  + Y P +   ++ I G+EAL++W HP+ G +S +EF+ +AEE  +I  +  ++LE+ 
Sbjct: 749 QFLVHYQPQVD-REQRITGVEALLRWKHPQRGMVSPAEFIPVAEETGLILPLGQWVLEQA 807

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  W+ +     + I +N++ +     +  + + A I  T   P  +KL  +ES++ 
Sbjct: 808 CLQLAVWQKRPETAGLSIAVNVSVRQFRHPDFVDMVMAAIKHTGIQPHNLKLELTESLLA 867

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
              E +   +G L+ +G++L LDDFG   S LSYL  +P D +K + S +    S     
Sbjct: 868 DRMEIAIAKMGTLKALGVTLALDDFGMGYSSLSYLKRLPLDQLKIDKSFIADVFSDPNDA 927

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           AI  +II +A+++   +IA+ +  E     L  +GC Y Q      PL        ++  
Sbjct: 928 AICSAIISLAQSLGLDVIAEGVETEAQRSFLAGLGCGYYQGFLFCPPLPIAEFEAFMQGA 987

Query: 957 FP 958
            P
Sbjct: 988 AP 989



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 10/195 (5%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG------IFSDG 404
            +   M    R   D    AL      +V  +        LA     +       +    
Sbjct: 126 GVLAVMDAAARACRDGDLDALNILGRQVVAQLDLRRQHKFLADRSAEREQQSRMRLQHSE 185

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            R  +A+  +    W  ++  D +T + +   ILG  S +M   +   L +     R   
Sbjct: 186 NRLHIAMRTAQMGNWSLNLADDSLTLSSEFPAILG-TSAAMPQTLEELLLHYAAESRGRL 244

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R ++      +      E ++  A +   W+ I    + +  G I R  G   DI  +K+
Sbjct: 245 RHVISEC-ARKGTPFDEEAQMLTAQDGRRWVRIIGEVVRDGQGAITRIQGALQDINARKQ 303

Query: 525 SLEGILCNAFQDNLT 539
           + E  L  A +  LT
Sbjct: 304 AQEETLRLAMR--LT 316



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 37/233 (15%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +Q + A     +       R +  +    +     D          +   +L  ++  
Sbjct: 293 GALQDINARKQAQEETLRLAMRLTTTLASITEAFVTLDREGRFTYLNQESERLLQRSTAE 352

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G    W  +         R  +   +   R ++++E+   A   +  W+ +R  P   
Sbjct: 353 LLGQ-EIWQDF-GEEVSGRLRQHIQRALATNR-QVEFEY-FDAPLGK--WLEVRAYPF-- 404

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI--LDLSATDD 562
                        D++E++ S E ++        TGI        RL  I  +  ++   
Sbjct: 405 ----AEGLAVYFRDVSERRNSQEQLMLLE-----TGIA-------RLNDIVVIVEASPHH 448

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVG---DDVLVSLTRRIGELLKFPDILARL 612
              P ++         +ND      G   D+VL  +   +       D LAR+
Sbjct: 449 GSGPQIVF--------VNDAFERHTGYTRDEVLSRMPGMLQGPGTRQDELARI 493


>gi|39996049|ref|NP_952000.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|39982814|gb|AAR34273.1| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA]
 gi|298505072|gb|ADI83795.1| sensor diguanylate cyclase/phosphodiesterase, HAMP and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 842

 Score =  529 bits (1363), Expect = e-147,   Method: Composition-based stats.
 Identities = 151/652 (23%), Positives = 294/652 (45%), Gaps = 19/652 (2%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
             + L ++       +++    G   A+L+     L+            +++   I+   
Sbjct: 190 ITLALFTLSAASAVALLFAMGGGTLSAILISRPIALLQEGV--------EQVGQGILDTR 241

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +       +  +     +           I +        +    D +   D     +  
Sbjct: 242 IDISGNNEIGRLAGAFNRMTTELRAAKDEITTARNYLDNVICSMADALLVVDTNGTVMNV 301

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            P +  +LG     + G  R++   +   D  + ++I+       +     E   R+   
Sbjct: 302 NPALCGLLGYRENELIG--RSFSSIL--ADGGHGQSIIAEMAEQGQVP-DRELLYRSRQG 356

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +   +++    M N +G++   + IA+D+ E+K+S E I   A+ D LTG+PNR  F DR
Sbjct: 357 ELIPVVLSGGAMRNQDGEVCGIVCIAHDMRERKRSEEEIRRLAYFDPLTGLPNRALFQDR 416

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           ++  L ++  ++     ++ +D+D++K IND LG A+GD +L S+  R+   ++  D LA
Sbjct: 417 VSHALAVARREEGA-VALLFLDLDRFKDINDTLGHAMGDLLLTSVADRLKAHVRVSDTLA 475

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL  + F +IL    +   ++  A ++   +    +L  +E+ ++ SIG A + S     
Sbjct: 476 RLGDDEFVVILTGARDERGVSIVAQSLLDLLTPSFDLEGKEVFISTSIGIALFPSDGEDG 535

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728
           + +L  A++A++ AK  G N    +     R   DR  +++ L  A+ N E YL Y P I
Sbjct: 536 NVLLSRADMALHAAKEAGRNVYRFYSDDMNRSAQDRRGLEDRLRRALANEEFYLDYQPQI 595

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +    I G+EAL++W+HP+ G I    F+  AEE+  I+ I  ++L        +W++ 
Sbjct: 596 DMRTGGIFGVEALLRWNHPEEGLIPPGRFIPAAEEMGFIRRIGEWVLRAACLQCRAWQES 655

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              PP+ + +N++          + +  ++ +T   P+ ++L  +ES ++     + + L
Sbjct: 656 GL-PPVRVAVNVSGHQFNQPGFIDMVDRVLEETGLDPTLLELELTESTLLEGARDTIMTL 714

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+  GI L +DDFGT  S LSYL + P D +K + S +          AI+ +II MA
Sbjct: 715 IDLKVRGIHLAIDDFGTGYSSLSYLKHFPIDRLKIDRSFVRDIVSDLDDRAIVEAIIAMA 774

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            ++   ++A+ +  E +++ L   GCD +Q  +   P+    +   L    P
Sbjct: 775 HSLGLRVLAEGVEREEELELLRERGCDEVQGYYFGRPMSARDLEARLMAALP 826


>gi|291613404|ref|YP_003523561.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291583516|gb|ADE11174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 830

 Score =  529 bits (1363), Expect = e-147,   Method: Composition-based stats.
 Identities = 163/576 (28%), Positives = 268/576 (46%), Gaps = 15/576 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +    +  +LA   S    W++D++    T      ++    +  + G   +
Sbjct: 253 EVVKRTEELARTNDELALAAKMSTLGYWEYDVLAREFTFNDQYYSLHFTTASEVGGYRLS 312

Query: 452 WLPY----IHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRIRPMSNS 505
           +  +    IH  D       +   +         + E R   AD    WM IR +  S+ 
Sbjct: 313 YEDFAKRFIHHEDTQRISDHIQFELDSSEADFVVETEIRTLCADGSMRWMRIRFKSQSDE 372

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G   +  G++ DITE+K+S E I   A  D LTG+PNR+ F DRL   +  S   + L 
Sbjct: 373 HGRKYKLTGVSQDITEKKRSEETIWQQANFDPLTGLPNRRMFQDRLEHEIKKSNR-EGLP 431

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +M ID+DK+K++ND LG   GD +LV   +RI   ++  D +ARL G+ F +IL   +
Sbjct: 432 LALMFIDLDKFKEVNDTLGHDKGDILLVEAAQRISGCVRESDTVARLGGDEFTVILSELD 491

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++  I   A A+ +++  P  L E    V+ASIG   + +       ++ NA+ AMY +K
Sbjct: 492 DANSIERIAQAIIQALVAPFLLAEEVAFVSASIGITLYPNDAPNLELLMSNADQAMYASK 551

Query: 686 HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F  S   +  +R+ +  DL  A+  ++  L YHPI+ L    I   EALI+
Sbjct: 552 SAGRNRFSYFTPSMQAAALNRMHLINDLRDALSRNQFRLHYHPIVELSSGNIHKAEALIR 611

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           WDHP  G I+ +EF+ +AEE  MI  I  ++     R ++  R++ + P   I +N +  
Sbjct: 612 WDHPVRGLINPAEFVALAEESGMIVEIGDWVFRESVRQVLRLREE-HHPEFQISVNKSPI 670

Query: 804 DLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              +++    + +   + +       I +  +E +++   E  +  L  LR  GI + LD
Sbjct: 671 QFRNDDRYFRDWLPH-LQQLGLPGECITIEITEGLLLDATESVQAKLLDLRDAGIQVALD 729

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL     D +K + S +     T   + +  +II MA  +   +IA+ I 
Sbjct: 730 DFGTGYSSLSYLKKFDIDYIKIDRSFVRNLTATSDDMVLCEAIIVMAHKLGLKVIAEGIE 789

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  LT  GCDY Q    + PL  +    +LK 
Sbjct: 790 TATQRHLLTAAGCDYGQGHFFSRPLPSHEFESMLKN 825


>gi|206975811|ref|ZP_03236722.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|206745905|gb|EDZ57301.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
          Length = 604

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 43  EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 101 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 217 RFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       + ++KNA++AMY AK  G N    
Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFIF 336

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++++G EALI+W HPK G +
Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 396

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 397 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 455

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 456 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 515

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 516 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 575

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 576 NCDHIQGFFISKPVSSKDVWRLLHKK 601


>gi|312112576|ref|YP_003990892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311217677|gb|ADP76281.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 842

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 154/810 (19%), Positives = 334/810 (41%), Gaps = 37/810 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLG---Y 231
           L+        ++  T+   + + V+  +AI   + +  + S   +    +  +V      
Sbjct: 36  LYFVAEANQYLSLHTILEFLSVTVSLSIAIQGWMIFPQHLSRYRLWYSVVFLIVGIIDLL 95

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA 291
            ++ +  +  L+ + S             L+ + ++F  ++    +  ++     F    
Sbjct: 96  HTLSYKGMPGLIVVESSPQKATWFWVAARLTQACMLFFIIFFPDRQVQSRQKKTMFIFSV 155

Query: 292 CIAILFCMSFYYPMVTASI-------------ARITLASIVLYYTYFIIYHGMKGYERA- 337
              ++             I                 +  +    T +++    K   +  
Sbjct: 156 LYVLVISYIIIRYEQKLPILVVDGKGTTNLKNFLEYIIILFYASTAYMLLCSYKKQPKKA 215

Query: 338 -VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATG 394
            + LI A++ + +      +        + +     G   +  +  +   T+ +   A  
Sbjct: 216 HLDLILAFVFLILSEFLFTLYKNVYDLQNFLGHLYKGISYIYFMKGIYIATIKEPYDAQK 275

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +    +         G+ V   D  +       +   +LG     + G       
Sbjct: 276 KAEEELKKREKYLKTITSSLGEGVIVLDKDKKITFINQEAERLLGYQKNELLGK--ALFQ 333

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADNQFHWMIIRIRPMSNSNGDI 509
            IH    ++    L      +   L+  +RV        D     +     PM + NG++
Sbjct: 334 KIHCGS-EHQCDSLRECPLCQTAELKKAYRVEEDFFVRKDGTLLPIAYVSTPMIDDNGEV 392

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DITE+KK  E I   A+ D LT +PNR+  +++L   L  +    N R  ++
Sbjct: 393 IGSVIVFRDITERKKYDEKIKYQAYHDALTDLPNRRYLIEKLKNELKKAEEH-NSRIAIL 451

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K IND  G  +GD +L ++ +R+  ++     +ARL G+ F ++L   +    
Sbjct: 452 YLDLDNFKNINDSFGHVMGDLLLKNVAQRL-TMIHPDCFIARLGGDEFAVLLSGND--FN 508

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I + A    +S+  PI L  +E+ +T S+G + +         ++++A++AMY AK +G 
Sbjct: 509 IEEIACKTIQSLNQPIKLENKEVFITTSVGISVYPKDGDDEMTLIRHADMAMYDAKKKGK 568

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +     +       I++ L  A+E  E+ L Y PII  + ++I+GLEAL +W+HP
Sbjct: 569 NQFSFYTAELEQQKIRKSKIEQLLRTAIERKEVSLCYQPIIDTVSKQIIGLEALARWNHP 628

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G+I ++EF+ +AEE   I ++   +L+   + +    +      +++ +N++ + L  
Sbjct: 629 EIGDIPANEFIAVAEENGQIVSLGKHILKTALQHLKQLHEIGFDY-LYVSVNLSLRQLRH 687

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +E    +  L+ K     S +++  +E + + + +     +  L+ IG+ + +DDFG  C
Sbjct: 688 HEFTALISQLLQKNKLQASHLEIEITEHIALSDEKCVIHNIQELKDIGVRIAIDDFGVGC 747

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S + YL     DT+K + S +    +      +  ++I  A N+   ++A+ +     + 
Sbjct: 748 SSIGYLRTFSVDTLKIDKSFIFDVATNPNTAQLTSALITFAHNLNLQVVAEGVESAEQLC 807

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C+ IQ    + P+ F  ++ LL  
Sbjct: 808 FLEQHHCNKIQGYLFSPPVSFEQLVSLLHS 837


>gi|160874481|ref|YP_001553797.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160860003|gb|ABX48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315266718|gb|ADT93571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1015

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 10/568 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + + G     +       L Y  +N
Sbjct: 452  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYREFEVRDQHIRLL-YCDLN 510

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + +      +G+ Q E   R  + + + + + I  +++  G   R + + +DI
Sbjct: 511  GRDFYIKMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L++ +  +  + N    ++ +D+D +K++
Sbjct: 569  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S  +   I   A  + +
Sbjct: 628  NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 688  RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + G +S +EF
Sbjct: 748  QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WR +  +  I I +N +     D   L      
Sbjct: 808  IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 867  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 927  DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986

Query: 935  IQDSHVASPLGFNSILKLLKERFPLVKN 962
             Q    + P+      +   +  PLV  
Sbjct: 987  GQGYLFSRPVPAAEFTQKYLQDPPLVSR 1014



 Score =  111 bits (279), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 133/410 (32%), Gaps = 50/410 (12%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIG-VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232
           ++++P  + DT +      G+  G + + +A+ +T  Y   R S+      +   V+   
Sbjct: 58  WIYQPGVFFDTRSVILCISGLFFGGLPTFIAVVMTALY---RISIGGAGMWIGVGVIVSS 114

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
            +      +        +              +++  F++L        +  +T   +  
Sbjct: 115 GLIGVIWRQYRKSYLANISGGEIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTI 174

Query: 293 IAILFCMSFYYPMVTASIARI------------TLASIVLYYTYFIIY-----------H 329
             I   +          + R             +  +                       
Sbjct: 175 FPIATWLLSRLLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLC 234

Query: 330 GMKGYERAVLLIPAWIL------IFIWFIGLWMAITKRLDND------IIQPALVGGLVL 377
            M  Y  A LL   W        +    +   + +   +DN       I++   V    +
Sbjct: 235 QMLKYSEAELLRMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHM 294

Query: 378 IVI---------LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            V          L+       + A  +  Q + +  E+  L +  S   VWDWDI  DR+
Sbjct: 295 TVACKRGGNNAVLLVIAGYLDITAQAFADQEVLASREQLELVLSSSDLGVWDWDIRHDRI 354

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                 A ILG     ++   R W+  I   DR      +++ +     + + E+R+   
Sbjct: 355 ERNARSADILGCDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTL 414

Query: 489 DNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
           + +  W++   + +  ++N + LR  G   DIT+ K   E +  +A   D
Sbjct: 415 NRKVRWILDTGKVVSRDANDNALRMCGTYTDITDAKLIEESLKLSALVYD 464



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 10/273 (3%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +         +  + F G+     +   + Y   +  +   I +  IV      +I+   
Sbjct: 65  FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386
           +    A +      L       + +     L N I  P L    + ++ +          
Sbjct: 125 RKSYLANISGGEIFLFAYAVHIVMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184

Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +          Q    D              +    I +  +   P +  +L  +   +
Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNAGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 W    H +D +      +  +       + + R    D    +  + +      
Sbjct: 245 L--RMTWAQITHPDDLETDALKFELMLQGDIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           N  +L  I    DIT Q  +       A ++ L
Sbjct: 303 NNAVLLVIAGYLDITAQ--AFADQEVLASREQL 333


>gi|146309526|ref|YP_001189991.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas mendocina ymp]
 gi|145577727|gb|ABP87259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas mendocina ymp]
          Length = 960

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 140/580 (24%), Positives = 274/580 (47%), Gaps = 12/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGL 440
              ++ +L T           + Q LA      + + ++  D     +      + + G 
Sbjct: 380 AGRVRRMLGTRRDVSARRQQEQEQRLAATVFEAASEGIFILDPDYRVLAVNRAFSAVTGY 439

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G  R     I   +      ++   +    G  Q E        + +   +++ 
Sbjct: 440 SREEVVG--RTVTSLIGSREMRRQYQMIRQELDG-SGSWQGELIETRKSGELYPQWLQLN 496

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +++G     +G   D+T ++++ E +   +  D LTG+ NR  F +RL      +  
Sbjct: 497 LVRDASGRPSHIVGFFADLTARREAEERLRYLSHYDELTGLANRSLFKERLHEASQRARQ 556

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ ID+D++K +ND LG  V D +L  ++RR+ + +   D +ARLSG+ F I+
Sbjct: 557 SGR-SIALVHIDLDRFKLLNDSLGHEVADQLLRQMSRRLTQAVPEADCIARLSGDEFAIL 615

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L +  +   +A  A  +   + +P+++   E+ V+AS+G +           ++  A +A
Sbjct: 616 LDAYGSLSSLARVASRLLAKLRLPMDVGGHELVVSASLGISLLPDYAREIGALISQANMA 675

Query: 681 MYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           + HAKH GGN  + F  +       R+ ++  L  A+E  +L + Y P + L D+++   
Sbjct: 676 VQHAKHLGGNTFQFFTDNLQACTLERLQLENQLRKAIEEGQLEVFYQPKLNLADDQLNAA 735

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G ++  EF+ +AEE  +I  I  F+L +  R    W+ Q     I + +
Sbjct: 736 EALVRWRHPQQGLVAPGEFIGLAEETGLIAPIGEFVLRQACRQARQWQQQGLAE-IRVSV 794

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+   L    L   ++ ++ +T  +P  ++L  +ES ++ N +   +   +LR++G+ L
Sbjct: 795 NISVYQLRQGNLTSLVRQVLEETGLAPQYLELELTESQLLDNVDSVVVTFRQLRELGVKL 854

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL   P   VK + + +   +   +  AI R+II MA ++E  ++A+
Sbjct: 855 AIDDFGTGYSSLSYLKRFPVHYVKIDQTFIRDLSPGGEDAAITRAIIAMAHSLELKVVAE 914

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  +  +  L    CD IQ   ++ P+   +  +LL+ +
Sbjct: 915 GVETQAQMDFLKSQNCDEIQGYLISRPVEAAAFAELLRAQ 954



 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 122/380 (32%), Gaps = 31/380 (8%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLT--IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
             +  LY+G  +    +L + L   +      S+ L+  +    ++L  + +        
Sbjct: 30  ERTRLLYQGSRLPTLLMLLVGLACSLLLWREGSAPLLAGWLAWVLLLVLLRLTQVNAFNA 89

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
                     WR        +S +   F  +               G+   AIL     Y
Sbjct: 90  ALPSRQAESYWRRNFLFGAGASGLTLAFAVIVLVPPDVFYQQALVYGLIAAAILSASVAY 149

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW---------FIG 353
              ++A +       +       +  + ++     + +I    L+ +           + 
Sbjct: 150 AVSLSAFLTFALPCLLPSAAFLLLSDNSLQRGWGLLSVILFLALLVVAWQVNRLVQRSLL 209

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVIL------------------IGFTVIQHVLATGY 395
                   + N         GL   +                    +   V +  L    
Sbjct: 210 QRFHNQALIANLEHAKQRAEGLNEELAREVEQRRRAERELRGAHGELEMRVAERTLELDE 269

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +  +     R +LA+  S   +WDWD+  D+V  +  +  + GL    +   +R+  P 
Sbjct: 270 ATHALGKSQARLALALEASELGLWDWDLESDQVHHS-HLRELFGLEPEQVQVMLRDLTPR 328

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIG 514
           +H +D    R  L   +  R    Q E+RVR  D  + W+  R R +  ++ G + R +G
Sbjct: 329 LHPDDLPRLRRALVEHMKGRSEDYQIEYRVRHVDGHWVWVEDRGRAVERDAAGRVRRMLG 388

Query: 515 IANDITEQKKSLEGILCNAF 534
              D++ +++  +     A 
Sbjct: 389 TRRDVSARRQQEQEQRLAAT 408


>gi|330970417|gb|EGH70483.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 639

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 148/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLATGY 395
           +  + + +        L   +       + Q  +  G  L+  V++         +  G 
Sbjct: 14  LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 73

Query: 396 FS-QGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  AQFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133

Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    H           L S      G+   E   R    + +     IR +   +G  
Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQP 188

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++
Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSRRGCALL 247

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D ++ IND LG  +GD+VL +   R+  L      ++RL G+ F +++ +  + + 
Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVH 307

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  +   P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G 
Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     +    RV +  +L  A+E  EL + Y P+  L+   I  +EAL++W HP
Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVEALVRWQHP 427

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  +F+ IAE+  +I  I+ ++L    R + +W  +       + +N++S+    
Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  
Sbjct: 487 GDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I       
Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q    A P+   SI
Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630


>gi|46201519|ref|ZP_00054892.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 804

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 135/562 (24%), Positives = 253/562 (45%), Gaps = 14/562 (2%)

Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHIN 459
            ER SL       + + ++  D     +   P    I G  +    G   + L    H  
Sbjct: 1   MERLSLYQAVFDNAFEGMFATDCDNRIIAVNPAFTAITGYTAEEAVGNDPHMLSSGFH-- 58

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR  +  +         G  Q E   R  D +   + + I    ++ G   R I +  D+
Sbjct: 59  DRAFYEEMWAKLSS--TGLWQGEVIDRHKDGRPVRLWLSISSQRDAEGKTARRIAVFRDV 116

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE +++ E +   +  D LT +PNR  FLDRL   L L+   +  +  ++ I +D +K I
Sbjct: 117 TEARETAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGR-EGSKAAMLFIGLDGFKNI 175

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +GD VL   +RR    L+  D  AR  G+ F ++L     + ++     ++ +
Sbjct: 176 NDSLGHWIGDKVLQEASRRFQNCLRQGDTAARFGGDEFTVVLSGIRATAEVEAVIRSVLE 235

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            +  P  +    I ++ SIG   W         +++NA  A+  AK  G N    F   +
Sbjct: 236 VLQEPFTVEHHHILISCSIGVCLWPGDGEDVEALMRNATAALQQAKQAGRNTFRFFTPAM 295

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +    R  + ++L  A+   E +LV+ P++ +   ++   EAL++W +   G +S  +F
Sbjct: 296 DARAQARSRLADELSSALAQGEFHLVFQPLVDVKTGKVNAAEALLRWHNRYLGVVSPDQF 355

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE+ +I+ I  ++L    R+ + W+       I I +NI+ +     ++   ++  
Sbjct: 356 VPLAEEIGLIRPIGEWLLTAACREALVWQGMGLGE-INIAVNISPRQFQQGDIVGIIRRA 414

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P  + +  +E +++ N E     +  +R +G+SL++DDFGT  S LSYL   P
Sbjct: 415 LEETRLPPWLLTIEITEGLLLSNGEEILAKMETIRALGVSLSVDDFGTGYSSLSYLKSFP 474

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           ++ +II +  ++   ++A+ +  +  +  +T +GCD  
Sbjct: 475 VDVLKIDRSFIADMGEHSDDATMVEAIIALGHSLHLEVVAEGVETQHQMDFITNLGCDVA 534

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q    + PL      + + ER 
Sbjct: 535 QGYFFSPPLSAARFREFVLERQ 556


>gi|186683815|ref|YP_001867011.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc
           punctiforme PCC 73102]
 gi|186466267|gb|ACC82068.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc
           punctiforme PCC 73102]
          Length = 824

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 158/577 (27%), Positives = 277/577 (48%), Gaps = 12/577 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q +         +    +     V  + DI+  ++     V   P I  + G+++ 
Sbjct: 244 VLVFQDITERKQILAALARRQQEFKALVENAPDIISRFNTQLRYVYVNPAIEKVTGISAE 303

Query: 444 SMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  G     L      +      R +   F   +    +    + A   Q      R+ P
Sbjct: 304 TFIGKTNAELNL--PEEFCRMCDRKLGQVFQTKQETEFECTLAIAA---QTRHYHTRLVP 358

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
              S+  +   + I+ +IT  K +   ++ +AF D LT +PNR  F++RL   L L+   
Sbjct: 359 ELASDESVYFVLSISRNITALKLAEAQLIHDAFHDILTSLPNRALFMERLERALMLAKRR 418

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +    V+ +D+D++K +ND LG  +GD +L +L RR+   ++  D +ARL G+ F I+L
Sbjct: 419 ADYTFAVLFLDLDRFKVVNDSLGHMIGDQLLTALARRLENCVRAGDTVARLGGDEFTILL 478

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              NN          + +++     L   E+  T SIG      S     ++L++A++AM
Sbjct: 479 DDINNINDAIGVVERIHEALTSAFTLSGYEVFTTVSIGIVVSKGSYNLPEQILRDADIAM 538

Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G    E F   + +  +  + ++ DL  AVE  E  + Y PI+ L   +I+G E
Sbjct: 539 YRAKALGKARHEIFDSTMYTQITKLLELEMDLRRAVERQEFQVYYQPIVLLETCKIIGFE 598

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILI 798
           AL++W HP+ G +    F+ IAEE  +I  +  ++L    R + +W+ Q    PP+ I +
Sbjct: 599 ALVRWQHPQHGLVPPESFIPIAEETGLIIPLGYWVLGEACRQMRAWQIQFPTDPPLTISV 658

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++K  L  +L E +  ++ +T    S +KL  +ESV+M N + +  +L +L+++ I L
Sbjct: 659 NLSTKQFLQPDLIEQINQIMQETALEASNLKLEITESVLMENIQSATFMLLQLQQMNIQL 718

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFG   S LSYL   P   +K + S +T  G+  + + I+++II +A+++   +IA+
Sbjct: 719 HLDDFGIGYSSLSYLHRFPSHALKIDRSFITKIGANGENLEIVQAIITLAESLNIDVIAE 778

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            I     + +L  M C Y Q    + PL   SI  L+
Sbjct: 779 GIETVEQLSQLRAMKCKYAQGYFFSQPLDSKSIETLI 815



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SG 443
             I+  L+     + I  + +  +  +   GD V   D         P    + G   S 
Sbjct: 114 FTIEITLSKHRTEKKIKQNEQWLTTVLKSIGDAVITSDASGTVTFMNPIAEELTGWNYSD 173

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +            H   R    + +   +       L  +  +   +     +   I  +
Sbjct: 174 AFGKEATEVFNIAHEETRIIIESPITQVLQSGITVGLPEQTILITKNGAEIPIDDSIAAI 233

Query: 503 SNSNGDILRYIGIANDITEQKK 524
            + NG+I   + +  DITE+K+
Sbjct: 234 KDDNGNITGAVLVFQDITERKQ 255


>gi|304409445|ref|ZP_07391065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307303803|ref|ZP_07583556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304351963|gb|EFM16361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306912701|gb|EFN43124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1015

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 263/568 (46%), Gaps = 10/568 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + + G  +  +       L Y  +N
Sbjct: 452  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSVMTGYRAFEVRDQHIRLL-YCDLN 510

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + +      +G+ Q E   R  + + + + + I  +++  G   R + + +DI
Sbjct: 511  GRDFYTQMNNEIRE--KGQWQGEMWQRRKNGEEYVIWLTINTINDKEGHPYRRVALFSDI 568

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L++ +  +  + N    ++ +D+D +K++
Sbjct: 569  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLSSEVKNADRNRN-HFALLFLDLDFFKEV 627

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S  +   I   A  + +
Sbjct: 628  NDTLGHAMGDLLLIETAIRLKSCVRDADVVARLGGDEFTVVLSSMEDHKGIERVAENILR 687

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 688  RIAEPYVLGEETAYISASIGITLYPDDSTSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 747

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + G +S +EF
Sbjct: 748  QEYAKYRMRLIQDLRQAVANKEFELHYQPIVALATGEVTKAEALIRWHHAERGAVSPAEF 807

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WR +  +  I I +N +     D   L      
Sbjct: 808  IPVAEDTGLIVEIGNWVFEQAARQSAAWRHELGVE-IQISVNKSPIQFRDEGTLLNDWLK 866

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 867  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 926

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 927  DIDYLKIDQSFTRHIDTDSNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLAAGCDY 986

Query: 935  IQDSHVASPLGFNSILKLLKERFPLVKN 962
             Q    + P+      +   +  PLV  
Sbjct: 987  GQGYLFSRPVPAAEFTQKYLQNPPLVSR 1014



 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 2/159 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            L+       + +     Q + +  E+  L +  S   VWDWDI  DR+      A ILG
Sbjct: 306 ALLVIAGYLDITSQALADQEVLASREQLELVLSSSDLGVWDWDIRHDRIERNARSADILG 365

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                ++   R W+  I   DR      +++ +     + + E+R+   + +  W++   
Sbjct: 366 CDVDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETAQHKMEYRLNTLNRKVRWILDTG 425

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
           + +  +++ + LR  G   DIT+ K   E +  +A   D
Sbjct: 426 KVVSRDAHDNALRMCGTYTDITDAKLIEESLKLSALVYD 464



 Score = 81.9 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 74/273 (27%), Gaps = 10/273 (3%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +         +  + F G+     +   + Y   +  +   I +  IV      +I+   
Sbjct: 65  FFDTRSVILCISGLFFGGLPTFIAVVMTALYRISIGGAGMWIGVGVIVSSGLIGVIWRQY 124

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV----- 386
           +    A +      L       + +     L N I  P L    + ++ +          
Sbjct: 125 RKSYLANISGREIFLFAYAVHIIMLLWFVFLPNGIGMPLLEQVTLPVLTIFPIATWLLSR 184

Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +          Q    D              +    I +  +   P +  +L  +   +
Sbjct: 185 LLSRRFELERDEQIRLQDDFLFRSQFNVGNIGIAITGIDQKWIKVNPRLCQMLKYSEAEL 244

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 W    H +D ++     +  +       + + R    D    +  + +      
Sbjct: 245 L--RMTWAQITHPDDLESDALQFELMLQGEIDNYEMDKRFIVKDGSVVYTHMTVACKRGG 302

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +   L  I    DIT Q  +L      A ++ L
Sbjct: 303 SNTALLVIAGYLDITSQ--ALADQEVLASREQL 333


>gi|157373981|ref|YP_001472581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
 gi|157316355|gb|ABV35453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
          Length = 817

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 135/570 (23%), Positives = 257/570 (45%), Gaps = 12/570 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
           +       + +    E        S + V   D     + T    + I G +   + G  
Sbjct: 253 LSRNISQHKAVQEQLELSGRVFENSVEGVMITDRDGKIIETYGAFSEITGYSREEVLGKN 312

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              +    H  D+  +  +    +   +GR   E   R  +      ++ +  M   +G 
Sbjct: 313 PSMFSSGRH--DKAFYDDLWTGLLH--KGRWHGEIWNRRKNGAIFPQLVTLSSMLGDDGL 368

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  ++ +  DI+ QKK+ E +   A+ D LT +PNR +   ++   L  +      +  +
Sbjct: 369 VRYFVAVFTDISAQKKNEEQLAHLAYHDPLTNLPNRMTLTAQIEQELRHAQ-YQGSQLAI 427

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D +K+IND  G  +GD++LV L  R+       D LAR+ G+ F ++      S 
Sbjct: 428 VFIDVDLFKQINDSFGHLMGDEILVELANRLTAQKGAEDTLARIGGDEFVVLFPGGGGSE 487

Query: 629 KIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           ++      +R++   P ++ E + + +TAS+G + +         +L+NA+ A + AK  
Sbjct: 488 ELTLALSKLREAFEQPFSVGENDQVRLTASMGVSVYPHDGKDGYTLLRNADAAKHRAKQD 547

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             N    +  S      + + ++  L +A+E    +LVY P +     + VG EAL++W 
Sbjct: 548 SRNSYAFYTESLTLESREHLKLQSALHMALEEGNFHLVYQPKLNFNSLKTVGFEALLRWR 607

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P  G+IS   F+ IAE++ +I AI  ++L       + W +Q       I +NIA + +
Sbjct: 608 DPVLGDISPGVFIPIAEKIGLINAIGSWVLRAACLQGVKWIEQGKTFG-RIAVNIAGQQI 666

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +   E ++ ++++T +    ++L  +ES +M +PE +   L  L  +GI L++DDFGT
Sbjct: 667 KRSSFVEEVKQILNETGFPAQSLELEVTESFMMSDPEVAIRDLRVLGDLGIELSVDDFGT 726

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P   +K + S +          AI +++I +   +   +IA+ +  E  
Sbjct: 727 GYSSLNYLKKLPIHKLKIDQSFVRDIPSDANNTAIAKAVIALGHALNLQVIAEGVETEEQ 786

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              L   GCD +Q    + P    ++ + L
Sbjct: 787 ADFLRESGCDEVQGYLYSRPQLPEALQQFL 816



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 2/124 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L +    + VW  DI    V     +    G     +             +  + F  
Sbjct: 147 LQLFIDSLKEHVWMKDIEGRYVIFNRSVEKSWGKTREEIMNKTDE--ELFVADLAEEFIQ 204

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +         E   + A+   +W+     P+   +G +   IG++ +I++ K   
Sbjct: 205 ADTEAINKGEQITAGECEGQHAEIDRYWLETAKVPVVTDDGCLKGVIGLSRNISQHKAVQ 264

Query: 527 EGIL 530
           E + 
Sbjct: 265 EQLE 268


>gi|89092543|ref|ZP_01165496.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083055|gb|EAR62274.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 878

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/567 (24%), Positives = 248/567 (43%), Gaps = 14/567 (2%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +  E+  LA      + + +   D     +        I G     + G   + L   H 
Sbjct: 318 ASIEQLRLAGIAFSSTNEGIMITDKRNRIIDINRAYMNISGYGRDELIGKNPSILRSEHH 377

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIAN 517
           +  + F   +   +   R   Q E   R  + +     + I  + + N   +  ++ +  
Sbjct: 378 S--NEFYQSIWKSLEEER-HWQGEIWNRLKNGEVVPHWVNINAVHDPNTDALTHFVSVIA 434

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+  K S E +   A  D LT +PNR  F  RL   L      +     +  +D+D++K
Sbjct: 435 DISNIKASEEKLSHLAHHDALTNLPNRLLFSARLDHALTHREASEK--IVMFHLDLDRFK 492

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG   GD +L+ +T R+  +L   D LAR+ G+ F I++    +       A  +
Sbjct: 493 HINDSLGHKYGDQLLLQVTERLKGVLSDKDTLARVGGDEFAILVEELEHVSDAESIADRL 552

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +++  P  L  ++   TASIG A           + K+A++A+  AK  G N+   F+ 
Sbjct: 553 VEAMEQPFTLDGKDYFTTASIGLALAPDHGDDIDTLTKHADIALNQAKDSGRNNFAFFQP 612

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  + + ++ +L  A+  ++  L Y P +      IVG EALI+W HP+ G I  +
Sbjct: 613 ELSETVQEWIKLEPELRKALAENQFQLHYQPQVDSTGTAIVGAEALIRWHHPEMGIIPPN 672

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ IAEE+ ++  I  +++      +  WR +       + IN+A   +    L   + 
Sbjct: 673 QFLPIAEEIGLMNKIGEWVMNTALEQLSFWRSRGL-IGFRLAINLAGDQITKQNLPMVVM 731

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +         ++L   E+ +M + E +     +LR++G+ L+LDDFGT  S LSYL  
Sbjct: 732 QALEHFQIPAEMLELEILETFLMEHEEEATSTFKQLRELGVHLSLDDFGTGYSALSYLKK 791

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   VK + SL+          AI +++I +A  ++ T+ A+ +      + L    CD
Sbjct: 792 LPITKVKIDQSLVRDIPEDPNDEAIAKAVILLAHTLDLTVCAEGVETRAQREFLESENCD 851

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLV 960
            +Q    + P+  N+   LLK+   L 
Sbjct: 852 QLQGYLFSKPIEANAFTNLLKKHNKLA 878



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW-----DWDIVRDRVTTTPDI 434
           +L     I  ++   + SQ      ER    +  +   V      D ++ +      P I
Sbjct: 170 LLEAAANIAGIVLNRFSSQENLQHKERLLENITQAMPGVVYQYHLDDELKQSFTYIGPGI 229

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            TI G+ + +       +   +H +DR      +     +      +EFRV   + Q HW
Sbjct: 230 ETISGITAEAAIEDFSEFWEQVHPDDRSGLWASIVHTGKHGLA-WSHEFRVFHKNGQMHW 288

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +     P    + + L + GI  DIT +K S+E + 
Sbjct: 289 VRGSALPSKLGSQEGLLWNGIILDITPEKASIEQLR 324


>gi|222098772|ref|YP_002532830.1| sensory box/ggdef family protein [Bacillus cereus Q1]
 gi|221242831|gb|ACM15541.1| sensory box/GGDEF family protein [Bacillus cereus Q1]
          Length = 909

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 174/856 (20%), Positives = 348/856 (40%), Gaps = 34/856 (3%)

Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175
             F   L    +         +  R+   D   F   ++P     F +      L  I  
Sbjct: 66  RLFWAILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FFYL------LFLISF 114

Query: 176 WEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGY 231
                Y+   N   L +  +I      + A F   +Y++   ++ I + +    +V L Y
Sbjct: 115 AFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHISSTSYIDIFVQLTY 174

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFS 288
              D  F    +NL    L +        L S+LI++      Y +   +  +    T +
Sbjct: 175 PMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIKYFTPEYSMFTIT 234

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
            +  + ++               +  +     +     +          ++ I    +  
Sbjct: 235 PLYQVTLVLVAIACILHTKEPERQEQVLLTPKFGEAIRLSLPYISVVMLIVFILVEYVFA 294

Query: 349 IWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSD 403
              +   M       + + +++      L+  +        Q  L T    +    ++ +
Sbjct: 295 PIIVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELRTEDLVEQKNELYHN 354

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +          D ++  D+  + +       T+LG  +  +      +    +  D + 
Sbjct: 355 QQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLTYEEDLEE 412

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                      +   +  E R    +   +++ +   P+   +  I     +  DITE K
Sbjct: 413 IVNAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESK 469

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A+ D LT + NR++F   +   +  S     +   VM +D+D++K IND L
Sbjct: 470 QQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVMFLDLDRFKVINDTL 528

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+++ +R+  +      LARL+G+ F I++ +      +   A  +  ++  
Sbjct: 529 GHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVKKIADTIVAAMNE 588

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N    +    ++  
Sbjct: 589 PFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNGSSLYTKELYKKM 648

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP  G+I   EF+ I 
Sbjct: 649 ERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHPLLGDIPPCEFIPIV 708

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   +  +  ++L    R +  W        + I +N+++K+   N L E +  +I+  
Sbjct: 709 EETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQNNLIENILQIITDV 767

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S L+YL   P DT+
Sbjct: 768 KVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTL 827

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  +
Sbjct: 828 KVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGYY 887

Query: 940 VASPLGFNSILKLLKE 955
            + PL  +  +K L++
Sbjct: 888 FSKPLTSHQFIKFLQK 903


>gi|260902608|ref|ZP_05911003.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308109632|gb|EFO47172.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 811

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/552 (25%), Positives = 261/552 (47%), Gaps = 17/552 (3%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +      + I G ++  + G   N L   H +D  
Sbjct: 267 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   +++           + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 438

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F I+L   +    + +   ++     
Sbjct: 439 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 498

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + ++ SIG A + +    S  +LKNA+ AMY AK  G N    +      
Sbjct: 499 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 558

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L+LVY P   L    I+G+EAL++W+HP++G +  ++F+ 
Sbjct: 559 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 618

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I+ I  ++L+        W  +       I +N+++  L  +     ++ ++ 
Sbjct: 619 IAEKTGLIQNIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 677

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R++L  +ES ++ +P+++   L +L ++GI ++LDDFGT  S LSYL  +P +
Sbjct: 678 ETGFPAHRLELEITESFLLIDPKQAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 737

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   +     AI+ +II M   +   ++A+ I     +  L   GC Y Q 
Sbjct: 738 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 797

Query: 938 SHVASPLGFNSI 949
              + P+    +
Sbjct: 798 YLFSPPVAAEKL 809



 Score = 45.3 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 421 WDIVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W    D +       +      ++  + G              + F       V      
Sbjct: 160 WIKTTDGLYAMTNRSVEQAWKKSNDDIVGKND--FDLFSAERAEKFIDADRLVVATGTQN 217

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  E R    +N   W+     P+ N  GD++  +G+  +IT ++K +E  L  A
Sbjct: 218 IVEECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 271


>gi|330976493|gb|EGH76544.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 639

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394
           +  + + +        L   +       + Q  +  G  L+  ++ F     + A     
Sbjct: 14  LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 73

Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133

Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    H           L S      G+   E   R    + +     IR +   +G  
Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 188

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++
Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 247

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D ++ IND LG  +GD+VL +   R+  L      +ARL G+ F +++ +  + + 
Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLKALADSGMTVARLGGDEFALLVKNCTHMVH 307

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  +   P  +   ++ V+ASIG + +    +T+ ++L+NA+ A++ AK  G 
Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVSASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     +    RV +  +L  A+E  +L + Y P+  L+   I  +EAL++W HP
Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHP 427

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  +F+ IAE+  +I  I+ ++L    R + +W  +       + +N++S+    
Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  
Sbjct: 487 GDVDRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I       
Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q    A P+   SI
Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630


>gi|260220680|emb|CBA28474.1| hypothetical protein Csp_A07390 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 897

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 129/570 (22%), Positives = 249/570 (43%), Gaps = 16/570 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                  Q I   G  +   +    D +   D+     T       ++G    +     +
Sbjct: 324 RQIRQDRQAIEEAGLYRQAILDSMVDGLVTLDLNGRIHTFNNAACRMMGRDPEA--PRPQ 381

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                +      N +  LD             E   R A+     + +    + ++  D 
Sbjct: 382 TLSELLGTQLPLNVQGHLDLLSTVDGIEGASAEVNGRHANGAIRPISVSASRIPHTEHDT 441

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++    DIT+Q++  E I   AF D LTG+PNR+  +DR+   +  SA        +M
Sbjct: 442 --FVVTLRDITQQRQDEEEIRRLAFYDPLTGLPNRRLLMDRVRQAMVNSARLGQ-HGALM 498

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--- 626
            +D+D +K +ND LG  VGD++L  +  R+   ++  D +ARL G+ F ++L   ++   
Sbjct: 499 FLDLDHFKLLNDTLGHDVGDELLQQVAYRLRNCVREGDSVARLGGDEFVVLLEGLSDNRT 558

Query: 627 --SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             + +    A  +  ++A+P +L       T SIG   +     T  ++LK A++AMY A
Sbjct: 559 DAANQAEVVAHKILDALALPYSLRGHGYNSTPSIGIVVFMEDHETMDDLLKKADVAMYQA 618

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F        +    + +++ L ++  E  L Y   I        G EAL+
Sbjct: 619 KAAGRNTARFFDPVMQAAVTTHAELAKEIRLGLQRHEFVLHYQVQID-SQGRCTGAEALV 677

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H   G +S + F+ +AEE  MI  +  +++E   + ++ W          + +N+++
Sbjct: 678 RWNHRVRGLVSPAHFIPLAEETGMILPLGEWVMESACQQLVEWSRNPMTAHWTLAVNVSA 737

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   E    ++  + ++     ++KL  +ES+++ + E   + +  ++++G+S +LDD
Sbjct: 738 SQLAQPEFVASVREALQRSGAPAGQLKLELTESMLVDDVEDIIVKMMAIKELGVSFSLDD 797

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   +K + S +    +      I R+++ +  ++  T+IA+ +  
Sbjct: 798 FGTGYSSLSYLKRLPLSQLKIDQSFVRDVLTDPSDAVIARTVVALGHSLGLTVIAEGVET 857

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 L  M CD  Q  +   P   ++++
Sbjct: 858 AEQRDALAAMQCDAFQGYYFGRPAPADALI 887



 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIAT----ILGLASGSMHGPI--RNWLPYIHINDRDNF 464
           + G    ++  D     +             LG +  +    +     L   H  D + F
Sbjct: 44  LEGVPVPLFVKDTQGHVIYVNRTWRQSMAPALGGSPAAAVSDVLSAEQLASFHQRDLEAF 103

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                          + E      + Q      +  + P+ +++G     +G   DITEQ
Sbjct: 104 SA-------GTTVTHEDEV---KGNGQQSARHTLTTLVPLFDADGQPSLIVGSTVDITEQ 153

Query: 523 KKSLEGI 529
           ++  +  
Sbjct: 154 RQLQQQN 160


>gi|229916945|ref|YP_002885591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Exiguobacterium sp. AT1b]
 gi|229468374|gb|ACQ70146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Exiguobacterium sp. AT1b]
          Length = 819

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 173/804 (21%), Positives = 303/804 (37%), Gaps = 46/804 (5%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV---NLPSGELL 251
           I+ +A  +        + +R         + WVV G  S+  G  +              
Sbjct: 26  ILSIAVAIFAAGVALDISSRLKYAKHASRLGWVVAGAFSLGLGIWAMHFIGMLAFHLNDD 85

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHA--KVGYITFSGIACIAILFCMSFYYPMVTAS 309
           +      + LS    +       W   H   +   + F        +  M +        
Sbjct: 86  VTYHLGIVLLSIVPAVVASGLAFWIISHPETRPIQLVFGAFLISVGVVSMHYIGMEAMQM 145

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI---------FIWFIGLWMAITK 360
            A +T   ++   +  + +         +  IP               I      M    
Sbjct: 146 NAILTYDPVMWVASAIVAFVASLVGLYILFYIPNVSRFHWRRLASSVLIGVAVSGMHYVG 205

Query: 361 RLDNDII---------------QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
                                    L   +   V+ +   +   +               
Sbjct: 206 MGAARFTPMEGAAKPVSDYAVDSTLLAYVIAASVMTLFILMYISLRTASQLEAQSEELEL 265

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +    +  + D +   D  R  +        + G  +  M G   + +  I    R+   
Sbjct: 266 KFESIIESASDAIIVADHNRTILQWNQGATDLFGYTTDEMVGQ--SIVAIIPERFREAHE 323

Query: 466 TILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             +  +      R+     E      D     + + +       G  + +  I  DI+E+
Sbjct: 324 RGMRRYEATGEKRVIGQTVELIGLRKDGVEVPIEMSLGTWKTDKG--IFFSSIIRDISER 381

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    I    + D LTG+PNR+ F DRL  +L  S ++      +  ID+D +K IND 
Sbjct: 382 KRIEAQINDLVYLDPLTGLPNRRLFSDRLDALLGQSQSEQ---FALYYIDLDNFKVINDR 438

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G ++GD  L  +T RI   ++  D LARL G+ F I+     ++L     A  +   + 
Sbjct: 439 FGHSIGDQFLKQVTTRIQSTIQKTDTLARLGGDEFIILSPDTKSNLAAHR-AQELINVLH 497

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  L   E+   ASIG +   S   T+ E++KNA++AMY AK  G N  + F      S
Sbjct: 498 PPFELENEEVFTGASIGISLHPSDGDTAEELIKNADIAMYRAKADGKNGYQFFTNELNES 557

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +   L   +   E  + Y P I+L  E ++G+EAL++W+HP+ G IS  EF+ I
Sbjct: 558 VSRRSNLSMALRKGIGRGEFTVHYQPQIQLETEMVIGMEALVRWNHPELGMISPGEFIPI 617

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  +  F+L    R   +W+D +  PP  + +NI++      +L E +   ++ 
Sbjct: 618 AEETGSIHRLGEFVLNEACRQNKAWQDASI-PPFRVAVNISAVQFAQKDLPEVVSRALAA 676

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +      ++L  +ESV + + +R+   +  L  +G+ L++DDFGT  S LSYL   P DT
Sbjct: 677 SGLEAQYLELELTESV-IQSADRAIETMHELVALGVHLSIDDFGTGYSSLSYLKLFPIDT 735

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +          EK  A++++II MA  ++  +IA+ +  E  +  L    C+  Q  
Sbjct: 736 LKIDQHFTKNIESDEKDAALVKTIIRMAHELDLNVIAEGVETENQVAFLKAESCNQAQGY 795

Query: 939 HVASPLGFNSILKLLKERFPLVKN 962
               PL    I    ++      +
Sbjct: 796 FYNRPLPAEEIEVFFQQYKKASSS 819


>gi|171058297|ref|YP_001790646.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775742|gb|ACB33881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 771

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 162/692 (23%), Positives = 301/692 (43%), Gaps = 23/692 (3%)

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            R   +V   T + +   A +F  + +  +    +A+       L          + G  
Sbjct: 55  RRQAGRVSTRTLTALIAHAGVFA-TLWGAVPGWMLAQANAGQHALLAGSLTGMLCIGGVT 113

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-VLATG 394
            A +   A+  +    + L ++   +    +   A+       V++ G  ++   V A  
Sbjct: 114 LAAVPAAAYAYLGGLSLSLIVSQFMQPSAQLGAGAVQWAGCAAVMVGGVLMMSRTVRARV 173

Query: 395 YFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                    G+   L +        D++W  D        +  +A  LG     + G   
Sbjct: 174 QAEMQAEHQGQLIGLLLRDFGEQGSDLLWQIDERGCLSQVSRRLADALGRPLAELQGRPL 233

Query: 451 -----NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                     +   DRD  + +    +  +    +          Q  W  +  +P+ N 
Sbjct: 234 LEVLTELQQGLSDIDRDATQMLQTCLIEGQ--PFRDVLMPMRVKGQPRWWSLTAKPLVNE 291

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G  + + G+A D+T+ + +   +   A  D LTG+ NR  F   L   L  +       
Sbjct: 292 RGVAMGWRGVARDVTQARMADRRMAWLAHFDTLTGLTNRAHFRVLLEAALQQA-RSPEQG 350

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VM +D+D +K +ND LG   GD +LV + RR+   +   D++ RL G+ F ++L +  
Sbjct: 351 GAVMCLDLDHFKTVNDTLGHPTGDALLVEVARRLKAAVGPGDVVGRLGGDEFAVLLRNAA 410

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  +I+  A  +  ++  P   L  ++ V  SIG A +     +  E++++A+LA+Y AK
Sbjct: 411 DVQQISATAQRILDALREPCAALGAQVPVRLSIGIARFAQDGASVDELMQHADLALYDAK 470

Query: 686 HR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
               G     + R+      R++++ DL  A++  +L L Y P + L   E+ G EAL++
Sbjct: 471 ASAPGSMKFFAPRMGEQVRRRLVLERDLREAIDKQQLSLHYQPKVDLQTWEVTGFEALLR 530

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ GNI  SEF+ +AE+  +I  I  ++L +  +    W       P+ + INI+  
Sbjct: 531 WRHPEHGNIPPSEFIPVAEDSGLILPIGEWVLTQACQQAARWPA-----PMQVAINISPV 585

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            ++   L E +   +  +  +P R++L  +ESV +     +   L  LRK+G+ + LDDF
Sbjct: 586 QVMAQNLPEAVGRALKASGLAPRRLELEITESVFINETRGTVDRLHALRKVGVQIALDDF 645

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   PFDT+K + + +     +    AI+R+I+ +AK++  + +A+ +   
Sbjct: 646 GTGYSSLAYLRRFPFDTLKIDRAFVREVLLSRDARAIVRNILALAKSLRMSTVAEGVEEP 705

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                L   GCD +Q   V+ P+  + +   L
Sbjct: 706 AQASVLGNEGCDLVQGFLVSRPMPADEVTGFL 737


>gi|66043357|ref|YP_233198.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254064|gb|AAY35160.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 639

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 148/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394
           +  + + +        L   +       + Q  +  G  L+  ++ F     + A     
Sbjct: 14  LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 73

Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133

Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    H           L S      G+   E   R    + +     IR +   +G  
Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQP 188

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++
Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSRRGCALL 247

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D ++ IND LG  +GD+VL +   R+  L      ++RL G+ F +++ +  + + 
Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVH 307

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  +   P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G 
Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 367

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     +    RV +  +L  A+E  EL + Y P+  L+   I  +EAL++W HP
Sbjct: 368 EGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVEALVRWQHP 427

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  +F+ IAE+  +I  I+ ++L    R + +W  +       + +N++S+    
Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 486

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  
Sbjct: 487 GDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I       
Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 606

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q    A P+   SI
Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630


>gi|229164297|ref|ZP_04292229.1| Sensory box protein [Bacillus cereus R309803]
 gi|228619180|gb|EEK76074.1| Sensory box protein [Bacillus cereus R309803]
          Length = 730

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 167/735 (22%), Positives = 316/735 (42%), Gaps = 36/735 (4%)

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
            +LI    ++  +  ++I       + +   A +   T   +     LF ++      + 
Sbjct: 2   WVLIGYFVAQSLVIYAVISLYRREKYSSSRIALIIGFTIILVYGYVHLFRLNAGMKSSSE 61

Query: 309 SIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLWMA 357
               I  ASI+L     I+Y   K            ++    ++P + +I        + 
Sbjct: 62  VSYLIHTASILLIGLSSILYILDKPIRHETKTKYYRFDYVRFILPYFSIII--TFAFIVL 119

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL------------ATGYFSQGIFSDGE 405
                   +I   L   L+ +  L  +   Q ++                 +  +    +
Sbjct: 120 QPWDDQFMLIGLVLSLILLFLRQLYMWKDNQALIDTYEKLTTQLEDEVEEGASALSKSEQ 179

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R         D V+  ++      +     ++    +        + L +I   D +  +
Sbjct: 180 RYKSLFEDHPDAVFSLNMNGIFQRSNQACESLF--TAYYCEVASYSLLHFIDPKDHELLK 237

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   + 
Sbjct: 238 RALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEK 294

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   AF D LTG+PNR+ F   L  +L  + T  N    VM +D+D++KKIND LG 
Sbjct: 295 QKQVEHLAFHDALTGLPNRRKFEKDLKAMLTTAQTSAN-DIAVMFLDLDRFKKINDRLGH 353

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    +  A  +   +  P 
Sbjct: 354 DVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQILTILNKPF 413

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            + + E+++T SIG A +       +E++KNA++AMY AK  G N    F      +   
Sbjct: 414 FIKDEELSITPSIGIAMYPDYGTNVTELMKNADMAMYCAKANGKNRFVFFSKEMSIAQNE 473

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE
Sbjct: 474 SNFLEGELSKALQQNEFFLEYQPQVHTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEE 533

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  +  ++L +   +   W +Q     + + +N++       +L   +  ++ +T  
Sbjct: 534 TGFIIELGNWILHKACSEAKKWHNQ-GFSHLKVGVNLSVVQFNHPDLISTISKVLEETKL 592

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + +  +ES+ +         L  L+ +GI +++DDFGT  S L+YL   P +T+K 
Sbjct: 593 KPEALDIEITESIAINQNHSVVAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKI 652

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
               + G   +    AI+ SII ++K +   +IA+ +  E     L    CD+IQ    +
Sbjct: 653 AREFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWNFLRAQNCDHIQGFFFS 712

Query: 942 SPLGFNSILKLLKER 956
            P+    +  LL ++
Sbjct: 713 KPVSNKDVWMLLHKK 727


>gi|256380853|ref|YP_003104513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255925156|gb|ACU40667.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 720

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/575 (24%), Positives = 262/575 (45%), Gaps = 14/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A       + +   R       +   +   D+    +     +  +LG     M    
Sbjct: 151 LDARDQAEAALRASEARFRAMFTEAAIGIGIADVEGRILDVNQALQDMLGFGVEEMRQH- 209

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            N    +H  D  +   + D      R   + E R R AD +  W  + +  + + +GD 
Sbjct: 210 -NIRDLMHPEDGPSVWRLYDQLTAGERDHYRAEKRFRRADGEQVWTHLTLSLVRDDHGDP 268

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D+T++      +   A  D LTG+PNR  FLDRL+ +          R  + 
Sbjct: 269 QYQVAMIEDVTDRHLLQNRLRYQALHDPLTGLPNRALFLDRLSRVFGNPDKH---RAGLC 325

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSL 628
            +D+D +K IND LG  +GD +LV + RR+   +     ++AR+ G+ F I++     + 
Sbjct: 326 YLDLDGFKVINDSLGHDIGDQLLVEVGRRLDRSVSGDGKLVARMGGDEFVILVEDSTRTD 385

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            I   A  + + +  PI +   E+TV+ASIG         ++ +++++A++ +Y AK  G
Sbjct: 386 DIVAVADRVLRELESPIRIGGHELTVSASIGIVERGLEGTSAPDLVRDADITLYWAKADG 445

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +    +       +     +   +  A+E  E Y+ Y P++RL +  +VG+EAL++W H
Sbjct: 446 KSRWALYDPDRNAKEIARFTLSATMPAALERDEFYVDYQPLVRLENARVVGVEALVRWQH 505

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G ++   F+ +AEE  +I  +  ++L +       W D+      ++ +N+A +   
Sbjct: 506 PEFGRLAPDRFIELAEETGLIVPLGRWVLRKACEQGRRWLDEFAELAPYVSVNLAVRQSR 565

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D EL   ++ ++ +T   P  ++L  +ES +MG  +     L  L  +G+ + +DDFGT 
Sbjct: 566 DPELVRDVKRILDETGLPPRHLQLELTESAIMGTADEPLEALRALSDMGVRIAIDDFGTG 625

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            S L+YL ++P   +K  GS M G             I+ +++ +A  +   + A+ +  
Sbjct: 626 YSNLAYLKHLPVHELKIAGSFMEGLRAADEEDPVDAQIVSTLVQLAHALGLGVTAEGVET 685

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               K L R+GCD  Q    A P+    I ++L+ 
Sbjct: 686 PSQAKRLHRIGCDTGQGWFYAKPMAPEGIDEMLRR 720


>gi|217962838|ref|YP_002341416.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217065154|gb|ACJ79404.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 604

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 43  EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 101 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 217 RFKKINDRLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       + ++KNA++AMY AK  G N    
Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVF 336

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++++G EALI+W HPK G +
Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 396

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 397 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 455

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 456 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 515

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 516 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 575

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 576 NCDHIQGFFISKPVSSKDVWRLLHKK 601


>gi|118581126|ref|YP_902376.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118503836|gb|ABL00319.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 629

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/488 (28%), Positives = 253/488 (51%), Gaps = 7/488 (1%)

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R   Q E+R +    ++ W++   + +  +  G  LR +G   DI E+K++ + +   A 
Sbjct: 2   RDTYQVEYRRKTKTGEWKWILAYGKVVARDEAGAPLRMLGTIADIHERKQNEQQLAYLAT 61

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +R    DRL   L  +     +   V+++D+D++K IND LG   GD++L +
Sbjct: 62  HDELTGLASRALLYDRLEQSLYYARRSGRI-LAVLLLDLDRFKVINDSLGHEFGDNLLKA 120

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ ++++  D  AR  G+ F I+L    +   +   A  + + +  P  +  +E+TV
Sbjct: 121 VALRLQQVIREGDTAARFGGDEFVILLAEVADPDDVGMLAGRILRCLEPPHLIDGKEVTV 180

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LC 712
           +AS+G + +       + +++NA++AMY AK  GG     F     +     ++ +  L 
Sbjct: 181 SASLGISLFPRDSDDDATLIRNADIAMYRAKREGGGSFSFFSPEMNQRAMETLETENALR 240

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++ SE  L Y P + L    ++G EAL++W HP+ G +  +EF+ +AEE  +I  +  
Sbjct: 241 QALDRSEFLLHYQPKVELATGRMIGCEALVRWLHPQRGMVPPNEFIPLAEETGLIVPLGN 300

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R + +W+D+   P + + +N++++     +L   +  ++  T   P  ++L  
Sbjct: 301 WVLTEACRQVRAWQDERL-PIVSVAVNLSARQFRAGKLPWLVANVLLATGLDPCWLELEM 359

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES+VM NPER+  L+  L+ IG+ L++DDFGT  S L+ L   P D +K + S +T   
Sbjct: 360 TESLVMDNPERAIALMRELKDIGVRLSMDDFGTGYSSLASLSRFPIDYLKIDRSFVTDIV 419

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  I  SII +A  ++  +IA+ +  E  +  L + GCD IQ    + PL  N   
Sbjct: 420 TNPHSATIAASIIDIAHRMQLQVIAEGVEAEAQLGYLRKHGCDQIQGYFFSRPLAANDFA 479

Query: 951 KLLKERFP 958
            LL++  P
Sbjct: 480 ALLRKNTP 487


>gi|119944290|ref|YP_941970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119862894|gb|ABM02371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 980

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 130/579 (22%), Positives = 271/579 (46%), Gaps = 9/579 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
               + + +       + +         +   +    + +D+  ++ + +  +  +LG+ 
Sbjct: 402 FLLGISEDITERNAAKKALEESEHSLRESQRIARLGSYLFDLRSNQWSGSEILDNLLGID 461

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIR 500
           +      +  W   IH +DR          V  ++     E+R++   D    W+     
Sbjct: 462 AD-YQRTMEGWAQLIHPDDRSRIDHYFKEDVLNQKKSFNQEYRMKRQNDQAVRWVHGLGE 520

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              ++ G  +   G   DITE+K +   +   A  D LTG+PNR    D++T +  L+  
Sbjct: 521 LEFDNQGSPILMKGTIQDITERKLAEAHLQALANFDQLTGLPNRFMLKDKITYLFTLARR 580

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           + N   T+M +D+D +K +ND LG  +GD +L+ + +R+   ++  D+++R+  + F ++
Sbjct: 581 N-NESLTMMFLDLDHFKNVNDTLGHVIGDRLLIEIAKRLKSAIREVDLVSRIGSDEFILL 639

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +  ++    + A  + +++++P      E+ +TA+IG A + +       ++KNA+ A
Sbjct: 640 FPN-TDADSALNIATKLIETVSLPTVFEHHELFITATIGIAIYPNDGEEFETLIKNADTA 698

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M  AK    N    F        +  +K    +  A+  +E+ + Y P I  +   I+G 
Sbjct: 699 MSQAKRYSRNTFHFFTEEMQVHLQRKLKIVNAMRHALLRNEMQVHYQPQISAVKGHIIGA 758

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G+IS  EF+ IAE    I AI  ++L      +  W+++    P+ + +
Sbjct: 759 EALLRWRHPELGDISPGEFIPIAESSGQIVAIGEWVLRTAIDQMKVWQNEGLA-PMVVAV 817

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++       L   + ++++K   +   ++L  +E++ M +P+++  ++ +L   GI +
Sbjct: 818 NLSALQFKQANLIGMIISMLNKAQLAHQYLELELTEAITMDDPQQAINIMNQLHAKGIRM 877

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LSYL       +K + S +          A++ +II MAKN+    IA+
Sbjct: 878 SIDDFGTGYSSLSYLKQFKVYKLKIDQSFICNLARDSDDRAMVHAIIDMAKNLGMQTIAE 937

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     ++ L   GC+ IQ  + +  +  +   +  K+
Sbjct: 938 GVETAEQLEFLRLHGCNEIQGYYFSKAIPADEFSRFAKQ 976



 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 104/363 (28%), Gaps = 32/363 (8%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS-------IDFGFLSKLVNLPSGEL 250
           ++ ++A  +       R   L     +   V   +        + +  +   V   +   
Sbjct: 66  ISIIIAALIFAVGWTGRKRKLPGNIVLLASVFLGVGILDFSHILSYPGMPDYVTPSNPNK 125

Query: 251 LIWRACSE-IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309
            I    +  I  +  L++F+ + +  + +      I    +A   I+  +    P   + 
Sbjct: 126 TIGFWLAARILSTIGLLLFVILPIRLSSFRFFRYLILSIILAATGIVHWLILMNPDFLSH 185

Query: 310 IARITLASIVLYYT-----------YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           +     A +                  ++    + +        + +             
Sbjct: 186 LFFTPQAGLSALKINTEYIIIGLTLITVLLLLQQMHRPQTYHASSLLTGLCIIAMSEFFF 245

Query: 359 TKRLDNDIIQ-----PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVL 412
           T   D   I         V   + I   I  TVI+        ++    + +R     + 
Sbjct: 246 TLYADLTDIYNISGHLYKVIAYLFIYRAIFITVIERPYHNLELAKTQLREKKRLLDDIIE 305

Query: 413 GSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
                ++  D+   R++        + G +  ++ G       +      D F       
Sbjct: 306 NIPTAIFLKDVNNLRLSLINKSTEKLFGHSRETILGQSDY--DFFPKEQADFFTNKDRET 363

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ---KKSLEG 528
           +  R      E  +         +  +   +++ + +    +GI+ DITE+   KK+LE 
Sbjct: 364 IERRTLLEIPEEIIDTPFGS-RTLYTKKIIITDEHNNPKFLLGISEDITERNAAKKALEE 422

Query: 529 ILC 531
              
Sbjct: 423 SEH 425


>gi|319761223|ref|YP_004125160.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317115784|gb|ADU98272.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 888

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 266/566 (46%), Gaps = 15/566 (2%)

Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
           + +  ERQ LA   +  + + V   D     ++  P +  +LG     + G   R +   
Sbjct: 328 LRTAEERQRLASTVLDNAVEGVVVADAHARILSINPVVTRVLGYTEEELLGRNPRVFQSG 387

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D+  + T+ ++    R G  Q E   R  + +     + +  + ++ G +  Y+ +
Sbjct: 388 RH--DKAFYETMWEAVR--RTGHWQGEIWNRRKNGEIFPERMSLSAVRDAQGAVTHYVCM 443

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +DI+++K   + + C +  D+LTG+PNR  F+++L   L  +      +  V+++++D+
Sbjct: 444 FSDISQEKAQHQRLECLSQCDSLTGLPNRAWFVEQLGQALCQAQVHGE-QMAVLLLNLDR 502

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G AVGD+VL  +T ++   L+  D++ R++G+   ++  +  +S   A  A 
Sbjct: 503 FKDVNDSYGHAVGDEVLRHITAQVCMSLRPGDLVGRMAGDEIAVLARNLRHSDGAAAVAQ 562

Query: 636 AMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            M  + + P       E+    S+G + +     T+ ++L+ A  A+Y AK RG      
Sbjct: 563 HMIAAASKPWRTPDGIEVVAGVSVGISMFPEHARTAEQLLQGAHSAVYGAKARGRGAHCF 622

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S      +R+ I+  L  A+    L L Y P + +    IVG EAL++W  P+ G I
Sbjct: 623 FDESMIQAARERLEIEARLRSALAQGHLRLYYQPQVDIAMGRIVGAEALLRWLDPEEGVI 682

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+ +AE   +I  +  ++++        WR     P I + +N++       ++  
Sbjct: 683 SPARFISVAETSGVIGPLGRWVMQEACSQGQRWRAAGL-PGIRLAVNVSPYQFQLTDVAA 741

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                +  +   P  ++L  +ES +   PE  R +L RL+ +G+ + +DDFGT  S L++
Sbjct: 742 CAAQALEDSGLPPHCLELELTESALAERPEAMRQVLQRLQALGVRIAVDDFGTGYSSLAH 801

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K +   +     +   +AI  +II M +++  T++A+ +     +  L   
Sbjct: 802 LKRFPIDALKIDQGFIRDIPSSADDMAISATIIAMGRSLGLTVLAEGVETPEQLAFLRAR 861

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD  Q    + P+       LL+ +
Sbjct: 862 GCDSYQGYLCSRPVPAEQFGALLQAQ 887



 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 2/151 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V+Q +         +        LA+ GSG  +WDWD+ + R+T +  +  +L     
Sbjct: 192 LCVLQDMGEINAARAALARSENILRLALDGSGSGMWDWDLAQRRITGSQGLLRLLRYLGP 251

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +     N L  +H  DR      +   +           R++  D  + W   R +   
Sbjct: 252 EL-PRGLNLLRLVHPEDRHRLHRAVQRAIAA-GVSFDEAARLQRFDGSYCWFQARGQCHR 309

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           ++ G   R+ GI  D+T+ + + E     + 
Sbjct: 310 DAQGRPERFSGILTDLTDLRTAEERQRLAST 340


>gi|229118797|ref|ZP_04248147.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228664667|gb|EEL20159.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 909

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 184/855 (21%), Positives = 341/855 (39%), Gaps = 30/855 (3%)

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174
           S  F   L    +         S  R+   D   F   ++P      +       L    
Sbjct: 65  SRLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFA 115

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYI 232
           L          +       I      + A F   +Y++   ++ + T +    +V L Y 
Sbjct: 116 LAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYP 175

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSG 289
             D  FL   +NL    L +        L S+LI++      Y +   +       T + 
Sbjct: 176 MADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTP 235

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF- 348
              + ++               +  +     +     +          ++ I A  +   
Sbjct: 236 FYQVVLVLAAIACILHTKEPEKQEQVLLKPKFGESIRLSLPYISVVMLIIFILAEYVFAP 295

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDG 404
           I  IGL +  T  L    +       L+L  +        Q  L T    +    ++ + 
Sbjct: 296 IVVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQ 355

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +          D ++  D+  + +       T+LG  +  +      +   I+  D +  
Sbjct: 356 QMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEI 413

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                         +  E R    +   +++ +   P+   +  I     +  DITE K+
Sbjct: 414 INAFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQ 470

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E I   A+ D LT + NR++F   L   +  +         VM +D+D++K IND LG
Sbjct: 471 QQEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFLDLDRFKVINDTLG 529

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L+++ +R+  L      LARL+G+ F I++ +      +   A  +  ++  P
Sbjct: 530 HRVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVAAMNKP 589

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +  + + ++ SIG A +  +      +L++A++AMY AK++G N    +    ++   
Sbjct: 590 FEIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIE 649

Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I++DL LA+ N E YLVY P I     +I+G EALI+W HP  G+IS  EF+ I E
Sbjct: 650 RKARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVE 709

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   +  +  ++L+     +  W        + I +N+++K+   N+L E +  +++   
Sbjct: 710 ETPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQ 768

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +E + M N + +   L +L++ GI   +DDFGT  S L+YL   P DT+K
Sbjct: 769 VDPKHVTLELTERIAMINEKETLSRLKQLKEYGIQTAIDDFGTGYSSLAYLSIFPIDTLK 828

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
                        +  AI  +I+ +A  +  ++IA+ I  E  +K L +  C Y+Q  + 
Sbjct: 829 VPREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYF 888

Query: 941 ASPLGFNSILKLLKE 955
           + PL     +K L++
Sbjct: 889 SKPLTSKQFIKFLQK 903


>gi|330941311|gb|EGH44171.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 628

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394
           +  + + +        L   +       + Q  +  G  L+  ++ F     + A     
Sbjct: 3   LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGE 62

Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 63  ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 122

Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    H           L S      G+   E   R    + +     IR +   +G  
Sbjct: 123 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 177

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++
Sbjct: 178 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 236

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D ++ IND LG  +GD+VL +   R+  L      +ARL G+ F +++ +  + + 
Sbjct: 237 VVDLDNFRNINDSLGHNIGDEVLKAAAERLKALADSGMTVARLGGDEFALLVKNCTHMVH 296

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  +   P  +   ++ V+ASIG + +    +T+ ++L+NA+ A++ AK  G 
Sbjct: 297 AAALAQQVINAFKAPYPIAGHQLFVSASIGISLFPGDALTAEQLLRNADSALFKAKTDGR 356

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     +    RV +  +L  A+E  +L + Y P+  L+   I  +EAL++W HP
Sbjct: 357 EGFALYTEELTAQAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHP 416

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  +F+ IAE+  +I  I+ ++L    R + +W  +       + +N++S+    
Sbjct: 417 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSR 475

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  
Sbjct: 476 GDVDRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 535

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I       
Sbjct: 536 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQAS 595

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q    A P+   SI
Sbjct: 596 FLLSNGCELGQGYWFARPMAAQSI 619


>gi|77920645|ref|YP_358460.1| sensory box-containing protein [Pelobacter carbinolicus DSM 2380]
 gi|77546728|gb|ABA90290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 847

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/575 (24%), Positives = 261/575 (45%), Gaps = 10/575 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + + +      ++ + +  +        + D +  +D    R+   P +  +LG    
Sbjct: 278 FCLCRDITERCEANKALLAREQDFRSLAENAPDAIVRYDRQLRRLYINPVLERLLGQDKA 337

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D   ++  L+        ++  E +    D    W   R  P  
Sbjct: 338 TLLGKP---FENHAPVDMTAYQDALEKTFQTGLQQVT-EVQYPLPDGTLGWFHARFEPEF 393

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +  +   +GI  DITE  +  E     AF D LTG+PNR  F  R       + + D 
Sbjct: 394 AEDATVKSVMGIVRDITELVEQRELAQHLAFTDMLTGLPNRALFEKRFKEAAAEAKSTD- 452

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D +K +ND LG   GD++L  +T R+   +   D +AR+ G+ F I+L  
Sbjct: 453 CPFALLMLDLDHFKDVNDSLGHNCGDELLRQVTARLSHCVNECDTIARMGGDEFAILLAE 512

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              S +    A  +  ++A P  +  +E+ ++ SIG A +        E+   A+ AMY 
Sbjct: 513 SRGSDEAGQVADLILSTLAQPFFIESQELFISGSIGIAFFPHDSANLDELFTYADTAMYS 572

Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AKH+G N+ + +     R    ++ +   L  A  N EL L Y P ++L D  +VG+EAL
Sbjct: 573 AKHKGRNNFQCYDQELTRHVSAKLSLGASLRYACVNHELQLYYQPKVQLKDGRVVGVEAL 632

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G ++   F+ IAEE  +I  I  ++L+   +  + +       P  + +N++
Sbjct: 633 LRWWHPVLGMLTPDRFISIAEETGLIVEIGEWVLKTACQAAVDFNR-NATAPFKVAVNLS 691

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L N+L   ++A++  T      ++   +ES+++ +  +    L  LR +GI++ +D
Sbjct: 692 CRQFLQNDLAATIEAILKTTGCRGEWLECEITESLMIEDNPQVAKTLEALRSLGITIAID 751

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D +K + S +        ++ +++  I +  N+E  I+A+ + 
Sbjct: 752 DFGTGYSALNYLSRFPIDVLKIDRSFINHIDTDPCKVGLVKVFIALGTNLEMQIVAEGVE 811

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +   L ++GC   Q      P  F +++  L 
Sbjct: 812 TVSESASLQKLGCGLAQGYLFGKPQPFKALMATLS 846



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPD 433
           +  +  L  F V++ +       Q +  +     L +  S   +   D      +   P 
Sbjct: 144 IQWLDKLFVFCVVKDISQQKLQQQRLQQELTLWQLLMERSKGGIAVIDGETLKVLDVNPA 203

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGYRRGRLQ---YEFRVRAA 488
            A +LG   G M G        +H  + D    R  ++S     +   +   +E  ++  
Sbjct: 204 FAEMLGYEPGEMLG--------MHPWEWDACRSRAQIESRAFSSQVSYEEYFFETIMKRK 255

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           D     + +   PM   +        +  DITE+ ++ +
Sbjct: 256 DGTLRNVEVNSLPMMVGDRK--HVFCLCRDITERCEANK 292



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 13/137 (9%)

Query: 388 QHVLATGYFSQGIFSDGERQSLA-VLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSM 445
               A    S+G F +     LA +  S D +   D      V      A +LG +   +
Sbjct: 33  ARDFAGSGVSEGTFQETGALHLAFMESSIDGIVIMDGASGGVVEANAAFAEMLGYSMEEL 92

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMS 503
               + +W       D    +  L   +        ++E R R  D Q   + I    + 
Sbjct: 93  RRLHVWDW-------DAQWSKDELRLIIANTGFSNQRFETRHRRKDGQILDVEISATKIQ 145

Query: 504 NSNGDILRYIGIANDIT 520
             +   L    +  DI+
Sbjct: 146 WLDK--LFVFCVVKDIS 160


>gi|325271650|ref|ZP_08138151.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas sp. TJI-51]
 gi|324103222|gb|EGC00568.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas sp. TJI-51]
          Length = 1098

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 140/583 (24%), Positives = 265/583 (45%), Gaps = 18/583 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
              T ++ +         + S  E+ + A   S D +   +    R +        + G +
Sbjct: 515  SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITECNSGRYLEVNDGFCRLTGYS 574

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     +  I  +D+      L + +  R      E   R        + + +  
Sbjct: 575  AAEVVGQTVYEI-GIWADDKQRG--ALLAELRERGRVHHREMLGRNKRGDILTVEVSVER 631

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++    ++   +  A D+++ K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 632  ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 690  -NLRGALLFLDLDHFKHINDSLGHPVGDAVLKIITARLEASVRLEDTVARLGGDEFVVLL 748

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        ++ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 749  SGLEGSRELVEAQVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGATPADLLKR 808

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP+ G    ++F+ + EE  +I  +  ++L+                  
Sbjct: 869  IVGAEVLLRWHHPQLGQQPPAQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +     +    +   +         +KL  +E +V+ N E +   +  L+
Sbjct: 929  DFSLCVNISPRQFRQADFVGRVLRSLDDYRLPRKMLKLEITEGIVIQNLEDTISKMRELK 988

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + S +  +        I+R+I+ MA++++
Sbjct: 989  RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDATVDPNDAEIVRAIVAMARSLD 1048

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+ +     ++ L ++GC   Q    + PL      ++L
Sbjct: 1049 LAVIAEGVELTEQLEFLEQLGCYLYQGYLHSRPLPLAEFRQML 1091



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 250 TQGIELEGVTFLISTFVDTSERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GL     H     +   +   +R++ R    S      G  Q  +RV+  +  
Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLENGV 369

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   +  G+ LR  G   DIT+Q +  + 
Sbjct: 370 SRYIESRARLYRDDQGNPLRMAGTLLDITDQVEREQR 406



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  + +  +   A+ G+    W WDI   RV+ +     + G           ++L  +
Sbjct: 22  SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADADYLDLL 81

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR   R +  +             R+R  D   HW+ I      + +G     IG+ 
Sbjct: 82  PEEDRARTRQVFQAIFNGEPVERAMRHRIRWPDGSLHWLEINGSLTHDQHGRPQ-MIGVV 140

Query: 517 NDITEQKK 524
            +IT Q++
Sbjct: 141 REITRQRE 148



 Score = 44.6 bits (104), Expect = 0.085,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 50/178 (28%), Gaps = 23/178 (12%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLAS 442
             V++ +         + +  +R +     S + +         +         + G   
Sbjct: 137 IGVVREITRQREREAALINSEKRFATLFHLSPNAILLSRRHDGMIFEVNQHFEDMFGWPG 196

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G     L   ++   R        +        ++ +FR  +       +  +   
Sbjct: 197 SQVIGKTSLELGLWVNPEQRQQVIESTRA--NGDPQIMEVQFRAISGKVHDGILCTQGIE 254

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +      +   I    D +E+K++       A +D+           +RL   LD + 
Sbjct: 255 LEG----VTFLISTFVDTSERKRAE-----QALKDS----------QERLDLALDSAQ 293



 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 23/170 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        + +   P      G +S
Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQNFGWSS 450

Query: 443 GSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             + G        W   I     +  + I           +     V          +I 
Sbjct: 451 EQVLGRTAEEIGLWAESI-----ERAQRIERVIREQALSNVAVV--VNHRSGAPLTCVIS 503

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539
            R ++  +      +    DIT+Q+++       E     AF    D +T
Sbjct: 504 SRLITVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551


>gi|221639437|ref|YP_002525699.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
 gi|221160218|gb|ACM01198.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
          Length = 816

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 143/589 (24%), Positives = 256/589 (43%), Gaps = 21/589 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F +I+ V       + +     R       +  ++W  D     V  +       G +  
Sbjct: 228 FGIIEDVHERRTTVEQLRESEARFRAFADDAPVMIWVTDTEGRNVFVSRSWLGATGQSLD 287

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  +H +DRD    I    +  R      EFR+R  D  + W+I    P  
Sbjct: 288 EALGT--GWIDAVHPDDRDATAAITRDAMRRRIA-YTNEFRIRRKDGGWCWVIDVGHPRL 344

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            ++G  + YIG   DI+ ++++ +        +   A  D LTG+PNR  F D     + 
Sbjct: 345 LADGTFIGYIGCCVDISARRQAEDDRVMAQLQVFHMARHDMLTGLPNRHYFGDCYQEAV- 403

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            ++        V+++D+D +K +ND  G  VGD VL  +  R+   ++  D +ARL G+ 
Sbjct: 404 -ASLAPERSVAVLMLDLDGFKTVNDTRGHPVGDQVLCEVANRLRTSVRSTDTVARLGGDE 462

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +I     +  +  D A  +  +I+ P +L      V AS+G A       ++ E+++ 
Sbjct: 463 FAVIQTPIRSEQEACDLARRLIAAISKPFDLEGAVPEVGASVGIAFARGRGDSAEEIMRY 522

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G      F     +    R  +K  L  A+   EL + Y P+I L D +
Sbjct: 523 ADVALYAAKQAGRGTFRVFDEATDTHLQSRQKMKAALRAALGLGELSVFYQPLIGLRDGQ 582

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W     G I+  +F+ +AEE  +I  +  ++L         W D      +
Sbjct: 583 VTACEALMRWHRKGAGWITPDQFIPLAEEAGLIGDMGEWVLHEACAQAARWPDS-----V 637

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++        L + + A +  +   P R++L  +ESV++   +R+  +L  LR +
Sbjct: 638 SVAVNLSPLQFHGGALVDQVAAALRASGLPPERLQLEITESVLLDPTDRNIGVLQDLRSL 697

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G  + +DDFGT  S L YL   PFD +K + S +    + R   AIL+++  + +++E  
Sbjct: 698 GAKIVMDDFGTGYSSLGYLRSFPFDKIKVDRSFIRDLPDAREALAILKAVAGLGRSLEMR 757

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              + +  +  +      G D  Q    + PL    I   +    P  +
Sbjct: 758 TTVEGVETQAQLDCAIAEGVDEAQGYFFSRPLPAPGIASFISGCLPKRR 806



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +      G  L+V     T ++           +          +       + +  
Sbjct: 87  RRFLVSRRPAGEHLVVTFFEITDLRET------EGVLRQREAHLRNLLELHPVAPFSFTA 140

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                  +  +  I GL +G+    +  W   +H  DR + R      V   +     E 
Sbjct: 141 DGVLSDLSDRLVAITGLPAGT--RHVDAWWAAMHPGDRRDLRRAWIRSVRGGQ-SFDAEH 197

Query: 484 RVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           R++  D  + W   R+     + +  + R+ GI  D+ E++ ++E + 
Sbjct: 198 RLQMPDGAYRWFRARVVARPRDQDQQVDRWFGIIEDVHERRTTVEQLR 245


>gi|218249057|ref|YP_002374428.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169535|gb|ACK68272.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 726

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 145/644 (22%), Positives = 289/644 (44%), Gaps = 10/644 (1%)

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                    +      G +   +L+   +        +   +T  +  D +       + 
Sbjct: 74  LPGFNGLQALKMLQEAGQKIPFILVTGSLGEEAAVECMKAGVTDYIVKDRLFQLPTILMR 133

Query: 377 LIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            +         Q V+     ++  + +  +R    +  + DI+            +P + 
Sbjct: 134 SLEEFALRREQQRVMEERRQAEIALRASEKRFRALIENASDIILIVAPDSQLTYASPSVE 193

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHW 494
            +LG  + S+ G    +   IH +++       D         +L  +FRVR   + +  
Sbjct: 194 RVLGYDASSLTGQ--RFFDLIHPDEQGEIIGFFDKIKETSNLSQLLPDFRVRTQKDTWVI 251

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +    R + + +  +  ++   +DITE+ ++ E +  +A  D LTG+ NR + L +L   
Sbjct: 252 LEAIARNLQD-DPAVGGFVVNCHDITERHQTAEQLRYDASHDKLTGLANRSALLKQLKRA 310

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++           ++ +D+D++K IND LG  +GD +L  + +R+    +  D+LAR  G
Sbjct: 311 IEQKKRRKEDHFALLFLDLDRFKVINDGLGHLMGDQLLKEMAKRLQRCHREGDLLARFGG 370

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F   L       +    A  + +++  P  L  +E+ ++ASIG         +  +ML
Sbjct: 371 DEFVFFLKEIRQQEQAIVVAERIHQALREPFILNHQEVFISASIGITLSADHYDSPEQML 430

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+ AMY AK RG      F  +       ++ ++ DL  A++  EL + Y PI  L  
Sbjct: 431 RDADTAMYWAKARGQGGHTIFAPTMHLSALKQLHLESDLRQAIQRQELVVYYQPIFSLDT 490

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           ++IVG EAL++W  P+   I  ++F+ +AEE  +I  I+ ++L+   + +  W+ +    
Sbjct: 491 QKIVGAEALVRWQPPEKPLIPPNDFIPLAEETGLILEIDHWVLKSACQQLYQWQQEFKTL 550

Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P FI +N++ K      L E +   I +T  +   +K+  +E+V + N      +L +L
Sbjct: 551 APQFISVNLSPKQFSQPNLTEKIVQTIKETGLAEQCLKIEITETVFLENSTSVLEILCQL 610

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909
           +++ I + LDDFGT  S LSYL   P +++K + + ++   +  K   I+R +  +A  +
Sbjct: 611 QQLNIQICLDDFGTGYSSLSYLHQFPLNSLKLDRTFVSRLGKTNKNDTIVRIVATLANEL 670

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +IA+ I     I+ L  +G  + Q    + P+  NS ++ L
Sbjct: 671 DLELIAEGIEEIEQIQLLHYLGYQWGQGYCFSPPVDSNSFIEFL 714


>gi|81300525|ref|YP_400733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Synechococcus elongatus PCC 7942]
 gi|81169406|gb|ABB57746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Synechococcus elongatus PCC 7942]
          Length = 1238

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 152/623 (24%), Positives = 273/623 (43%), Gaps = 17/623 (2%)

Query: 345  ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFS 402
            +      I    +        + Q      ++    ++     + + A G       I +
Sbjct: 615  MASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYIVRDENGRAIRAVGAMQDISAIVA 674

Query: 403  DGERQSL---AVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              E+  L   A+  +G+ +   D        +   P    I G ++  + G    +L  +
Sbjct: 675  ANEQLRLWLRAIESTGNSIIIADAQQPDMPIIYVNPAFEKITGFSAAEVIGRNFRFLQGL 734

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                +      +   +       +   R    D    W  I + P+ +  G +   +   
Sbjct: 735  --ETQQAELEEMRRALEE-GTYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHLTHMVASQ 791

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D++E K   E +L  A  D LTG+PNR  FLDRL      +         V+ ID+D +
Sbjct: 792  TDVSESKAFEEMLLQQATHDALTGLPNRLLFLDRLDQAAARA-RGGGSPIAVLFIDLDNF 850

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND    + GD VL     R+ + ++  + +ARLS + F I+LI  +   K    A  
Sbjct: 851  KAINDGFSHSEGDAVLQIAAGRLQQCIQEHETVARLSSDEFVILLIDLDVQSKARVKAAM 910

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            ++  +A P  ++   I +TASIG A++     + SE+L+ A+LA+  AK +G N   SF 
Sbjct: 911  IQSLMAKPFEVMGNPIELTASIGVATFPHDGQSGSELLQAADLAVCAAKQQGKNLWCSFS 970

Query: 697  --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +      R+ I++DL  A+ ++ L L + P + L+   ++G E L++W+HP+ G ++ 
Sbjct: 971  EAMREQLRSRIDIEKDLRQALIDNSLELYFQPQVDLVTHRLLGFETLVRWNHPERGLVAP 1030

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             EF+ IAEE  +I AI L+++      +  W D        +  NI+++  +   +   +
Sbjct: 1031 GEFIPIAEESDLIDAIGLWVMRAAGLTLRRWIDHEGFTG-SLSFNISARQFIRQNIFLKL 1089

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              ++ +    P ++++  +ES ++ +PER    L   R +G  + LDDFGT  S L YL 
Sbjct: 1090 FDVLQEFQIPPHQLEIELTESSLIESPERFVQWLQEARSMGFQVALDDFGTGYSSLGYLK 1149

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P + +K + S +          AI+++I+ MAK ++   IA+ +        L  +GC
Sbjct: 1150 RLPINALKIDRSFIRDLPHDHDDQAIVQAIVAMAKVLKLRTIAEGVERLEQAAFLEAIGC 1209

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
            D +Q      PL     L  L  
Sbjct: 1210 DAVQGFFYGPPLPEAEALAFLHR 1232



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            + +       Q +    ER  L    + D VWD +++ + +  + + + + G     + 
Sbjct: 532 FRDISDRVMSRQLLEEMAERFQLVTRATNDAVWDRNLLTNEIWYSANYSRLFGGEEKEIT 591

Query: 447 GPI-----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +       W   +  + R+     L   +         ++R    D  +  ++ R   
Sbjct: 592 QKLVQTVDLQWRDRLDPDQRERIMASLSGAIANGFSTWSEQYRFLRQDGTYAHVLDRGYI 651

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
           + + NG  +R +G   DI+    + E + 
Sbjct: 652 VRDENGRAIRAVGAMQDISAIVAANEQLR 680



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W+ D+    V T+P +  +LG  S       + WL +  ++DR      +D+ +   R
Sbjct: 199 GYWELDVQSQLVQTSPLVNRLLGKPSDQCLFSWQQWLEHFQLSDRLRLEQAIDTGMQTGR 258

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +Q  + + +       + +R   + +  G++    G+  
Sbjct: 259 -PIQATYALASDSQDRQLVELRAVIVRDLAGNVRSLRGVLE 298


>gi|88858416|ref|ZP_01133058.1| hypothetical protein PTD2_13539 [Pseudoalteromonas tunicata D2]
 gi|88820033|gb|EAR29846.1| hypothetical protein PTD2_13539 [Pseudoalteromonas tunicata D2]
          Length = 847

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/571 (25%), Positives = 286/571 (50%), Gaps = 12/571 (2%)

Query: 393 TGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
               +Q + +  +   LA   +  S D V   D         P   T+ G ++  + G  
Sbjct: 268 LSQRNQALKTSQKNLFLAKQIINASLDGVMITDNKGTIFQVNPAFTTLTGYSAEDVVGQT 327

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            + L     +    F   +   +  R    Q E   +  + + +   + I  +   + D 
Sbjct: 328 PSLLSSGKHD--KIFYDHMWQCLR-REHMWQGEIWNKKKNGEVYLEWLTIIEIKEPDDDE 384

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L Y  I +DITE+KK+ + I+  A+ D LT +PNR+ F DRL   L  +  D N +  VM
Sbjct: 385 LLYAAIFSDITERKKAEKRIISLAYFDELTHLPNRRLFSDRLEMALATAHRD-NSKLAVM 443

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K+IND +G  VGD +L  +  R+   ++  D LARL G+ F +++   ++  +
Sbjct: 444 FLDLDHFKQINDTMGHNVGDILLRQVAERLQACVREGDTLARLGGDEFTLLITEISDVEQ 503

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +  FA  +   +  P  L   ++++T SIG A +    I S  +LK+A++AMY +K  G 
Sbjct: 504 LTIFAHKLIHQLQAPFKLNGLDVSITTSIGAAVYPDDGIDSQSLLKHADVAMYRSKDLGR 563

Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + ++  +++   +R+ ++     A+  +E  L + P I    + + GLEAL++W  P
Sbjct: 564 NSFQLYKPAMNARSLERLAMESKFKKALRTNEFKLCFQPQIDAKHQRLTGLEALVRWQSP 623

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G+IS ++F+ +AE L +I  ++++++ +  + I  W D+  +P   + IN+++     
Sbjct: 624 ELGSISPAQFIPLAENLGLIVELDIWVINKACQQIRLWLDE-GVPFAKVSINVSALHFSQ 682

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +Q  +      P  +++  +E+  + +   ++ +L  L+K+G+ + LDDFGT  
Sbjct: 683 GNLVLAVQNALHYWHVDPHWVEIEITETSFISSLPEAKKVLTNLKKLGVKIALDDFGTGY 742

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P DTVK + S +    ++     I+ +II +AK++   ++A+ +     ++
Sbjct: 743 SALSYLTQLPIDTVKIDASFIAKVPDEYGNSQIVTAIIALAKSLRLGLVAEGVEKAAQLR 802

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L ++ C  IQ  + + PL     ++ + ++
Sbjct: 803 FLEQLECYVIQGFYFSKPLYPCEYVRFIAQK 833


>gi|157376469|ref|YP_001475069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
 gi|157318843|gb|ABV37941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
          Length = 1020

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/556 (25%), Positives = 249/556 (44%), Gaps = 12/556 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               +  +     S + +   D + + +T       I G   G +       L     +  
Sbjct: 453  ESLQLAASVYNNSSEAMSVQDSLGNIITINSAFTDITGYLEGEVLSKHIRILEC---DRT 509

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +    +    + GR Q E  ++        + + I  + ++ G++ R + + +DITE
Sbjct: 510  SKNQYEQMNMQITQTGRWQGEVWLKHKSGTEFIVWLTINTILDNKGEVYRRVALFSDITE 569

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K++   I   A  D LTG+PNR+  L+ L T L  S  +      +M +D+D +K++ND
Sbjct: 570  KKQAEHIIWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKK-HFALMFLDLDYFKEVND 628

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             LG  +GD +LV   +R+   ++  D++ARL G+ F ++L +  +   +   A  +   +
Sbjct: 629  SLGHDIGDLLLVETAKRLKGCIRESDVVARLGGDEFTVVLSAIQDHKGVERVAENILSRL 688

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            A P NL      ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S   
Sbjct: 689  AEPFNLDNESAYISASIGITLYPDDASSIDGLLKHADQAMYAAKEQGRNRYHYFTPSMQE 748

Query: 702  S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                R+++  DL  A+   E  + Y PII L D ++   EALI+W HP  G +S  EF+ 
Sbjct: 749  YAKYRMLLIRDLRKAIIRKEFEIYYQPIIELTDSKVFKAEALIRWHHPVRGVVSPGEFIP 808

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQAL 817
            +AEE  +I  I  ++ E+ A+    WR++     I I IN +     D      + ++  
Sbjct: 809  VAEETGLIIEIGNWVFEQAAKQSAMWRERFG-VAIQISINKSPIQFRDEGESFVDWIEQ- 866

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + K     + I +  +E +++         L   R  G+ ++LDDFGT  S L+YL    
Sbjct: 867  LKKLNLESNGICVEITEGLLLDASMGVSEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFD 926

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + S           + +  +II MA  +   +IA+ +  E   K L   GCDY 
Sbjct: 927  IDYLKIDQSFTRNLETDSNDVTLCEAIIVMAHKLGMKVIAEGVETEYQKKILFEAGCDYG 986

Query: 936  QDSHVASPLGFNSILK 951
            Q    + P+       
Sbjct: 987  QGYLFSKPIPVADFEA 1002



 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    +  + +       +    E+ +L +  S   +WDWD+  D+V      A +LG  
Sbjct: 307 LVIAGLLDITSQKQAESAMSKSQEQLALVLDSSELGLWDWDLKSDKVDRNDYCAKLLGSG 366

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              ++   R W+  IH  DR      +D  +     +   E+R+     +  W++ R + 
Sbjct: 367 VEELNDDGRLWINAIHPQDRLEVLHAMDKHLKGENPQYTVEYRLNTFSGETRWILDRGKV 426

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              ++NG  LR  G   DIT++K+  E +   A
Sbjct: 427 ASKDANGAPLRVCGTNTDITDRKRGEESLQLAA 459



 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 93/340 (27%), Gaps = 47/340 (13%)

Query: 203 AIFLTIFYM---VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEI 259
           A+ L + ++   V R       F     V   I                   ++     I
Sbjct: 14  ALLLAMVFVYDAVPRKQRHEYFFLWRISVGTVIGGITVTTMMTHWEYQP--GVFFDARSI 71

Query: 260 ALSSSLIIF-------------LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
            L  S + F             ++ +L          +     I    +L   S++    
Sbjct: 72  ILGISGLFFGGLPTFVAMVIASVYRFLE----GGSGWWAGIGIIFSSGLL--GSYWRYYR 125

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + IA ++   +  +                       ++  +W   L   +   + + I
Sbjct: 126 KSFIADLSFKELYAFGFIL------------------QVITLLWMFVLPFEMAISILSRI 167

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
             PAL+   +  V+L      +  +      Q    D              +    + + 
Sbjct: 168 SFPALIVYPIAFVLLGLLLSRRLEIERDAKIQ--LQDDFIFRSQFNVGNIGIAISSVDQH 225

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +   P +  +L      +   ++ W    + +D      + +  +       + + R  
Sbjct: 226 WIKVNPRMCQMLQYTEEELL--LKTWAEMTYFDDLQTDLNLFNRMLDGEFDEYEMDKRYV 283

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           A D    +  + +      N  +   I    DIT QK++ 
Sbjct: 284 AKDGSIVYTHLTVACQR-VNNQVQLVIAGLLDITSQKQAE 322


>gi|86749282|ref|YP_485778.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86572310|gb|ABD06867.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 818

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 137/560 (24%), Positives = 259/560 (46%), Gaps = 17/560 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +W +D      +          G    +    +R  L  I 
Sbjct: 260 SLKKREESFRLLFDGNPMPMWVFDAATTEFLNVNDAAVQHYGYDRDAF---LRMTLREIW 316

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D +     L         +    +R   AD     ++   R +  ++ +   ++    
Sbjct: 317 PRD-EWAAHSLALLQVGDSYQSGGNWRHLKADGTEIQVMTFGRRVVFNDRE--GFLVAVV 373

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE++K+   I   A  D LT +PNR  + +RL   L+ +      R  V+ ID+D +K
Sbjct: 374 DVTERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQA-RGGGGRVAVLCIDLDLFK 432

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G  +GD +L  +  R+   +   D++ARL G+ F ++L S  +  + +D A  +
Sbjct: 433 NVNDSFGHPMGDRLLRCVADRLRAQIGGNDLVARLGGDEFAVVLASVASPNEASDVAARL 492

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + ++ P ++   E+ + ASIG A           ++++A++A+Y AK  GG     F  
Sbjct: 493 IELVSAPYDMDGLEVVIGASIGIALAPGDGDDCDVLMRSADMALYRAKAAGGGCHHFFEK 552

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              R  +    ++ DL  A    E  L Y P+I L ++ + G EAL++W HP+ G +S +
Sbjct: 553 EMDRQAQRRRDMERDLRHAFARGEFDLHYQPLIDLAEDRVSGFEALLRWHHPERGMVSPA 612

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ IAE++ +I  +  ++L +   +   W +      + I +N++        L + + 
Sbjct: 613 DFIPIAEDIGLIVGLGEWVLRQACLEAARWPN-----DVKIAVNLSPVQFRSRNLVQVVI 667

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + ++++  SP R++L  +ES+ + + E +   L +LR +G+ +++DDFGT  S LSYL  
Sbjct: 668 SALAQSGLSPRRLELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYLRS 727

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +   T     +AI+R+I  + +++  T +A+ +     +  L   GC 
Sbjct: 728 FPFDKIKIDRSFVKDLTERPDCLAIVRAIAGLGRSLNITTLAEGVETVEQLDALRAEGCH 787

Query: 934 YIQDSHVASPLGFNSILKLL 953
            +Q    +       I  LL
Sbjct: 788 EVQGFLFSPARPAAEIAGLL 807


>gi|157373187|ref|YP_001471787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sediminis HAW-EB3]
 gi|157315561|gb|ABV34659.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sediminis HAW-EB3]
          Length = 836

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/570 (24%), Positives = 276/570 (48%), Gaps = 16/570 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    +R   AV  S + +WDW+++ D V  +     +LG  S  +   ++ W   +
Sbjct: 262 EKQLNDSQQRWLFAVEVSRNGIWDWNLITDEVFLSDRWKEMLGYHSDELKDELKTWQAML 321

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGI 515
           H  D+      L  ++       +   R++     + W++ R   +  +S G  +R IG 
Sbjct: 322 HPEDKAEALNTLHKYLNGEVEEFESVHRLKHKSGHYIWVLDRGMIVDWDSKGRPVRMIGT 381

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+++  ++ + I+     D LT + NR++ LD L  I        +    + VID+D 
Sbjct: 382 HTDVSDDVRNQQAIMHQINHDLLTDLANRRALLDELYRI---KEQKQSGSVALFVIDLDN 438

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA---- 631
           +K IND LG   GD +L+ +  R+        ++ARLS + F I+    ++   +A    
Sbjct: 439 FKMINDALGHHHGDRLLIQVAARLSSYFSNNALIARLSADEFVILAQGLSDDQSVAKRRT 498

Query: 632 -DFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGG 689
              A  +R+ I    ++  + + ++AS+G       S I   ++L++A+LAM+ AK +G 
Sbjct: 499 MALASQIRQMIGRSFHINNQTLNISASVGICVLDKLSDIDPEQVLQHADLAMHQAKEQGR 558

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    +     R   + ++IK +L  A+E ++L LVY PI+   + EI+  EAL++W HP
Sbjct: 559 DAHVVYSADMERVAQNSLLIKSELKNAIELNQLSLVYQPIVD-REGEIICAEALLRWQHP 617

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + GNI  S F+ +AE   +I+ I  ++L    + I   + +       I IN++++    
Sbjct: 618 EKGNIPPSSFIPVAEGSELIQDIGHWVLSETCQYIKRLQGEDVELG-SIAINVSARQFNH 676

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           ++  E +  +I +       I+L  +E  ++ N +  R  +  L++ GIS+ +DDFGT  
Sbjct: 677 DDFVESLLGVIRQQGLGAGSIELELTEYALLTNLDIIRQRMEVLKEAGISIAIDDFGTGY 736

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P   +K + + ++     +   +I+ +II MA ++   ++A+ +  +   +
Sbjct: 737 SSLSYLQSLPLSRLKLDAAFVSQIGVNDASNSIVIAIINMAHSLNLQVVAEGVETQQQYE 796

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  CD  Q      PL  ++ ++ +K 
Sbjct: 797 FLLQHDCDTFQGYLFNRPLTADNFIRAVKS 826


>gi|254459398|ref|ZP_05072819.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
 gi|207084011|gb|EDZ61302.1| ggef/eal/pas/pac-domain containing protein [Campylobacterales
           bacterium GD 1]
          Length = 835

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 148/571 (25%), Positives = 270/571 (47%), Gaps = 12/571 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +  +    + +       + A   +    W  D+  + ++ + +   I G+  G+   
Sbjct: 271 EDLDESRKREEELQKKETAMNEAQSIARVGSWSIDLKTNTLSWSNECYNIFGIEHGTQM- 329

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               ++  IH +D++N     D  +     + + E RV     +  W+  + + + + +G
Sbjct: 330 NYELFVEMIHKDDKENALLAWDEALKG--AKFEIEHRVIVGS-ETKWVREKAKFVIDEDG 386

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I+  IG   DITE+K+    +   A  D LTG  NR      L  ++     ++ +   
Sbjct: 387 TIVSGIGTVQDITERKQYENKLERLANFDTLTGFANRTFLFSYLQKVVHRCKRNNKI-AA 445

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++V+D+D +K IND  G  +GD++L  + +R+   ++  D +ARL G++F IIL   NNS
Sbjct: 446 LLVLDMDHFKDINDSYGHDIGDELLALIAKRLSTRIRGGDFIARLDGDKFAIILEDINNS 505

Query: 628 LKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              A FA  + + +  P  L    E+ + ++ G      +  T+ E+++ A+ A+Y  K 
Sbjct: 506 DDAAMFAKEIMEEVEKPFYLSNTSEVHICSTAGIVIAPENAETAEELIQFADTALYKGKK 565

Query: 687 --RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             RGG    S  ++      + +   L  A+E+SE  L Y P + +  + IVG EALI+W
Sbjct: 566 DKRGGISYYSDELTELAKKHIELATRLRRAIEHSEFELYYQPQVHIKSKRIVGAEALIRW 625

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           + P  G IS ++F+ +AEE  +I AI  +++    R    W D+     + I +N+++  
Sbjct: 626 NDPIHGLISPNDFIPLAEETGLIGAIGEWVIRDACRQGKLWIDKGYN--LSISVNVSANQ 683

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    +   + + + +T ++  ++ +  +ES VM   E +  +L  +R  GI L +DDFG
Sbjct: 684 LRHQNITRLIDSTLKETGFTADKLVIELTESAVMQREEEAVAMLHAIRAKGIRLAIDDFG 743

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S  SYL   P D +K + S +         +AI+++II M   +   I+A+      
Sbjct: 744 TGYSSYSYLKRFPIDILKIDKSFIDEVPFENDDMAIVKAIIAMGSALGYKILAEGTEHIE 803

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            I  L   GC Y Q  + + PL  +   KLL
Sbjct: 804 QIDFLEEHGCQYYQGYYKSKPLKTSEFEKLL 834


>gi|313200984|ref|YP_004039642.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440300|gb|ADQ84406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 869

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/563 (25%), Positives = 248/563 (44%), Gaps = 11/563 (1%)

Query: 398 QGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           + +  D  R + L    S + +   D     ++  P    + G  +  + G     L   
Sbjct: 311 RKVAEDKMRLATLVFENSSEAIMVVDAESQILSVNPAFTEMTGYTAQEVVGKTPKILAS- 369

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR  +  +    +    G+ Q E   R  + + +   + I  + N +G+++R + + 
Sbjct: 370 GKQDRKFYEEMW--HLLDSNGKWQGEVWNRRKNGESYAEWLTIDTIYNEHGEVIRRVALF 427

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT+ K++ E I   A  D LTG+PNR+   DRL   +  +  +  +   V+ +D+D++
Sbjct: 428 SDITKNKQNQEVIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQM-LAVLFLDLDRF 486

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND  G  +GD +L     R+   ++  D +ARL G+ F +IL    +   + D A +
Sbjct: 487 KEVNDTYGHLMGDQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQS 546

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K    P  L      V+ SIG   +         + KNA+ AMY AK+ G N    F 
Sbjct: 547 ILKKFDTPFQLDNDLTHVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYFT 606

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            S      +R+ +  DL LA+   +  L Y PI+ L   ++   EAL++W HP  G I  
Sbjct: 607 ASMQAHAQNRMRLSNDLHLALPGQQFELYYQPIVELATGQVHKAEALLRWQHPTRGMIPP 666

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEG 813
             F+ +AEE  +I  I  ++    AR +   +   +     I IN +     +     E 
Sbjct: 667 DNFIPLAEETGLIVDIGNWVFYEAARQVKRLQS-LHHASFQISINKSPVQFHNETHGHEA 725

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
             + +         I +  +E ++M   E     L   R  G+ + LDDFGT  S LSYL
Sbjct: 726 WISFLLMNDLPRQSIVVEITEGLLMHTDESISAQLLGFRDAGVQVALDDFGTGYSSLSYL 785

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K +   +   +     +A+  +I+ MA  ++  +IA+ I  E   + L ++G
Sbjct: 786 KKFDIDYLKIDRIFVRNLSRNSSDMALCEAIVMMAHKLDIKVIAEGIETEEQRELLQQIG 845

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD+ Q    + PL   +    L+
Sbjct: 846 CDFGQGYLFSPPLPAPAFEAYLR 868



 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +++ +       + +    +  +     +    W++D+     + T ++A I G+    
Sbjct: 177 AIVRDITERLRVVEKLRESEQLLAHMSAIAHIGGWEFDVETGIGSWTREVAHIHGVEFKD 236

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +      L +     R+     +   + + +     E  +  A     W+     P   
Sbjct: 237 -NISAEFGLGFYEAESREKIEAAIQQAIDHGK-PYDLELELVTARGIRKWVRTVCTPHI- 293

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
            +G +L+  G   DI+++K + + + 
Sbjct: 294 IDGRVLKLQGSFQDISDRKVAEDKMR 319



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 13/198 (6%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
            Y    + +   +   +W +     +   L              L+ IL+   ++ H++ 
Sbjct: 9   RYAAIRIPLIYCVFAVLWIMASDQILALLLPEAASITHFQTLKGLLFILLTAALLYHLI- 67

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                Q + +   R +   + + D +  +D     V        + G     M       
Sbjct: 68  ---HRQQLLAS--RYNSLTVHANDSILLFDHQGKLVDANDRALRMYGYTREQMQHIHA-- 120

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +  +   ++R+   +   +     + E   + AD     + +    +    G     
Sbjct: 121 -RQLLPDATSDWRSCFLAEAQHNGIIFESEH--KHADGSTFSVEVSACLLKI--GGSDYI 175

Query: 513 IGIANDITEQKKSLEGIL 530
             I  DITE+ + +E + 
Sbjct: 176 QAIVRDITERLRVVEKLR 193


>gi|253998885|ref|YP_003050948.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985564|gb|ACT50421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 869

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/563 (25%), Positives = 248/563 (44%), Gaps = 11/563 (1%)

Query: 398 QGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           + +  D  R + L    S + +   D     ++  P    + G  +  + G     L   
Sbjct: 311 RKVAEDKMRLATLVFENSSEAIMVVDAESQILSVNPAFTEMTGYTAQEVVGKTPKILAS- 369

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR  +  +    +    G+ Q E   R  + + +   + I  + N +G+++R + + 
Sbjct: 370 GKQDRKFYEEMW--HLLDSNGKWQGEVWNRRKNGESYAEWLTIDTIYNEHGEVIRRVALF 427

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT+ K++ E I   A  D LTG+PNR+   DRL   +  +  +  +   V+ +D+D++
Sbjct: 428 SDITKNKQNQEVIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQM-LAVLFLDLDRF 486

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND  G  +GD +L     R+   ++  D +ARL G+ F +IL    +   + D A +
Sbjct: 487 KEVNDTYGHLMGDQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQS 546

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K    P  L      V+ SIG   +         + KNA+ AMY AK+ G N    F 
Sbjct: 547 ILKKFDTPFQLDNDLTHVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYFT 606

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            S      +R+ +  DL LA+   +  L Y PI+ L   ++   EAL++W HP  G I  
Sbjct: 607 ASMQAHAQNRMRLSNDLHLALPGQQFELYYQPIVELATGQVHKAEALLRWQHPTRGMIPP 666

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEG 813
             F+ +AEE  +I  I  ++    AR +   +   +     I IN +     +     E 
Sbjct: 667 DNFIPLAEETGLIVDIGNWVFYEAARQVKRLQS-LHHASFQISINKSPVQFHNETHGHEA 725

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
             + +         I +  +E ++M   E     L   R  G+ + LDDFGT  S LSYL
Sbjct: 726 WISFLLMNDLPRQSIVVEITEGLLMHTDESISAQLLGFRDAGVQVALDDFGTGYSSLSYL 785

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K +   +   +     +A+  +I+ MA  ++  +IA+ I  E   + L ++G
Sbjct: 786 KKFDIDYLKIDRIFVRNLSRNSSDMALCEAIVMMAHKLDIKVIAEGIETEEQRELLQQIG 845

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD+ Q    + PL   +    L+
Sbjct: 846 CDFGQGYLFSPPLPAPAFEAYLR 868



 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +++ +       + +    +  +     +    W++D+     + T ++A I G+    
Sbjct: 177 AIVRDITERLRVVEKLRESEQLLAHMSAIAHIGGWEFDVETGIGSWTREVAHIHGVEFKD 236

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +      L +     R+     +   + + +     E  +  A     W+     P   
Sbjct: 237 -NISAEFGLGFYEAESREKIEAAIQQAIDHGK-PYDLELELVTARGIRKWVRTVCTPHI- 293

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
            +G +L+  G   DI+++K + + + 
Sbjct: 294 IDGRVLKLQGSFQDISDRKVAEDKMR 319



 Score = 58.8 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 13/198 (6%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
            Y    + +   +   +W +     +   L              L+ IL+   ++ H++ 
Sbjct: 9   RYAAIRIPLIYCVFAVLWIMASDQTLALLLPEAASITHFQTLKGLLFILLTAALLYHLI- 67

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                Q + +   R +   + + D +  +D     V        + G     M       
Sbjct: 68  ---HRQQLLAS--RYNSLTVHANDSILLFDHQGKLVDANDRALRMYGYTRDQMQHIHA-- 120

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +  +   ++R+   +   +     + E   + AD     + +    +    G     
Sbjct: 121 -RQLLPDAASDWRSCFLAEAQHNGIIFESEH--KHADGSTFSVEVSACLLKI--GGSDYI 175

Query: 513 IGIANDITEQKKSLEGIL 530
             I  DITE+ + +E + 
Sbjct: 176 QAIVRDITERLRVVEKLR 193


>gi|119773284|ref|YP_926024.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119765784|gb|ABL98354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella amazonensis SB2B]
          Length = 1069

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 140/563 (24%), Positives = 264/563 (46%), Gaps = 12/563 (2%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                 R +     S + +   D         P  + I G +   + G   + L   H N 
Sbjct: 501  RQALVRAAAVFEYSAEGIMVTDADNHIELINPAFSQITGYSIEEVKGRNPSILSS-HRNP 559

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +  + +S      G+ + E   R  D + +   + I  + +  G I+ +IG+  DI+
Sbjct: 560  PHLYDAMWESLRS--TGKWEGEIWNRRKDGEVYPEYLAITLVRDDEGQIVHHIGLFMDIS 617

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +K+  + I   A  D LT +PNR+   +RL   L ++  D   +  VMV+D+D++K IN
Sbjct: 618  RRKQYEQDIWYKANFDTLTDLPNRKLLSERLGHELKMAEHDGR-KLAVMVLDLDRFKYIN 676

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G   GD +L ++ +R+  ++   D +ARL G+ F I+L        +  +A  + +S
Sbjct: 677  DTQGHDCGDLLLKAVAKRLQTVMGSTDFIARLGGDEFVIVLPRLAQEHAVEQYAKRLLQS 736

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +  P  + +  ++V+AS+G   +    +    +L NAE AMY AK  G NH + F     
Sbjct: 737  MGDPFKVEQGSMSVSASLGIGLYPQDGLDVETLLSNAETAMYGAKDEGRNHFKYFTQEMN 796

Query: 701  RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +    +  + DL  AV N E  L Y P++ +   E+  LEAL++W  P+ G +S   F+
Sbjct: 797  LALIERLGMERDLRRAVANDEFCLFYQPVVDMESGEVTSLEALLRWQDPEQGLVSPVRFI 856

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCEGMQA 816
             +AE++ ++  +  +++++   D+           + + IN+++         L E +++
Sbjct: 857  PVAEDMGLMGELGQWVMDKALADLARLHTLGFG--LSMAINVSACQCHCKRQSLDEQLRS 914

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +S+   +P  + +  +ES+++ N       L  +R +G ++ LDDFGT  S LSYL   
Sbjct: 915  ALSRHGIAPRHLHVEITESLLLDNSHHCLDTLNNIRDLGCAIYLDDFGTGYSSLSYLKKF 974

Query: 877  PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P   +K + S +      E   +++R+I+ M+K++   ++A+ I  +     L  +G  +
Sbjct: 975  PISAIKIDKSFVEQLPGCESDASLVRAIVNMSKSLGMKLVAEGIESKDQQAFLQALGSQF 1034

Query: 935  IQDSHVASPLGFNSILKLLKERF 957
             Q    + PL F  +L  L+   
Sbjct: 1035 GQGYLYSRPLPFEELLPWLERHQ 1057


>gi|229064998|ref|ZP_04200296.1| Sensory box protein [Bacillus cereus AH603]
 gi|228716299|gb|EEL68011.1| Sensory box protein [Bacillus cereus AH603]
          Length = 735

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 168/734 (22%), Positives = 318/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   + +   T   +     LF ++      +
Sbjct: 6   AWILIGYFIAQSLVIYAVISLYRRERYSSSRISLIIGFTIILVYGYIHLFQLNTGMGTSS 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLW- 355
                I  ASI+L     I+Y   K            ++    ++P + +I  +   +  
Sbjct: 66  EVSYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFAVIQ 125

Query: 356 ------MAITKRLDNDIIQPALVGGL---VLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                 M I   L   ++    +       +++        Q           +    +R
Sbjct: 126 PWDDKFMLIGLVLSLVLLFLRQLFMWKDNQVLIDTYEQLTTQLEGEVEEGVSALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        +   +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++ + I   P+   N +++   GIA DIT   +  
Sbjct: 244 SLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INREVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L TIL+L+  + N    VM +D+D++KKIND LG  
Sbjct: 301 KQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNNTN-DVAVMFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    +  A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQILTILNKPYF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           + + E++VT SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IKDEELSVTPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 HFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +         L  L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E   K L    CD+IQ    + 
Sbjct: 659 REFICGITNSPLEEAIIASIITLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|284041608|ref|YP_003391948.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283945829|gb|ADB48573.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 763

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 162/728 (22%), Positives = 292/728 (40%), Gaps = 21/728 (2%)

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
            +     + +  L    L          L    I    +     +   +      +    
Sbjct: 40  GLLILLWAHVPALFVFALATGNPLQHALLEVVPIALCALVGQREQLGRRGRAAAVTIGLL 99

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
                 +  +   + A      +   +  Y  +  Y    GY   V+L    + +     
Sbjct: 100 TCSAVLVHLWDGTIEAHFHYFVMVVALAAYEEWFPYLLAFGY---VVLQHGLMGMMEPDS 156

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
                               G     +  +GF  +    A       + +  +R   A  
Sbjct: 157 VYAHGTDDDRSPWFWAAIHGG----FIAALGFASMVTWRANESVRAHLAASEQRFHRAFD 212

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            +   +    +          +A++ G  +G +   +R W   +   D    R    +  
Sbjct: 213 DAPIGMALIGLDGRFREVNRSLASLTGYGAGKLV-QLRLW--DLSPAD---VRAEDHAAW 266

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G    E R + AD    W + R   + + +G    ++    D+T +K+  + +   
Sbjct: 267 PPSAGMEAVEQRFQRADGTIGWGLWRYSLVQDESGIASHWVVQLLDVTSRKQFEQQLAHQ 326

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR     RL   LDL+   D+    V+ +D+D +K IND LG   GD +L
Sbjct: 327 AHHDPLTGLPNRALLTKRLQEALDLAREHDSG-VAVIFVDLDNFKVINDSLGHDAGDRLL 385

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            +++ R+  +L+  D+LAR  G+   + L    ++      A  M  ++  P  L   + 
Sbjct: 386 RNVSERLRRVLRPEDLLARFGGDELAVCLERVADTEPANRIADRMATALRAPFVLDGEQR 445

Query: 653 TVTASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIK 708
            VTAS G A             +L++A+ AMY AK RG    E F   +     DR+ ++
Sbjct: 446 FVTASFGIALARPEDPDRSPDTLLRDADAAMYRAKERGKARTEIFDASMRRRAVDRLELE 505

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+  ++L +VY P + L    IV +EAL++W+HP+ G IS + F+ IAE+  +I 
Sbjct: 506 SGLREALARNQLRVVYQPEVSLESGRIVAVEALLRWEHPQHGPISPARFIPIAEQSGLIV 565

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R    W  ++    + + +N++ + L  ++L   ++  I        R+
Sbjct: 566 PIGAWVLREACRQAAHWNAESGGDGVVVAVNLSVRQLGASDLEATVRGAIDGARLPADRL 625

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY-IPFDTVKFNGSL 887
            L  +ES VM +P  +   L  L+++G+ L +DDFG   S LS+L   +P D +K + S 
Sbjct: 626 CLEITESAVMADPAAAIESLQTLKRVGVKLAIDDFGVGYSSLSHLRELLPIDVLKIDRSF 685

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G    E+  AI+ +I+ +A+++    +A+ +        L  M C   Q  H A P  
Sbjct: 686 IDGVVLREEDRAIVTAIVQLARSLGVDAVAEGVETSDQAAALRAMHCPIAQGFHFARPQP 745

Query: 946 FNSILKLL 953
              + +LL
Sbjct: 746 PADVAQLL 753


>gi|126651165|ref|ZP_01723375.1| hypothetical protein BB14905_00845 [Bacillus sp. B14905]
 gi|126592003|gb|EAZ86069.1| hypothetical protein BB14905_00845 [Bacillus sp. B14905]
          Length = 581

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/551 (25%), Positives = 270/551 (49%), Gaps = 12/551 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
                 + +   D  +  V   P    + G     + G         +H  +   +  + 
Sbjct: 27  IFENVSEGIMITDEYKKIVMVNPAFEFVTGYKRDDVVGKTPAVLQSGVH--ELPFYLEMW 84

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +       G  Q E   R      +   + I  ++N  G++  Y GI  D++E+K     
Sbjct: 85  EQIRQE--GIWQGEIWNRRKTGDVYPEWLTIVCVTNDEGEVTNYCGIFTDLSERKIVENE 142

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
           +      D+LT + NR ++++R+  +L+  SA   +++  V  +D+D++K+IND LG AV
Sbjct: 143 LEKRLLTDSLTEVSNRFAYIERMDNLLESTSAISHSVQHAVYFLDLDRFKQINDTLGHAV 202

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L+ + +R+  LLK  DI+AR  G+ F I L +  N  + A FA  +  SI  P+ +
Sbjct: 203 GDSILIEVAKRLKHLLKNKDIIARYGGDEFVITLTNVKNVKEAAQFAEQIISSIEKPMMI 262

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
             +E+ ++ SIG + +      + E++  A+ AM ++K  G N    +           +
Sbjct: 263 NGQEVFISTSIGVSVYPVDGKNTEELINCADRAMTYSKKNGLNGYSFYFDELQTDAQRVL 322

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           ++  +L  A++N E  L + P I + +E+I GLEAL++W++ + G +S  EF+  AEE  
Sbjct: 323 LLDSELRRAIDNREFELHFQPKIYMDNEQIQGLEALVRWNNERLGFVSPGEFIPYAEETG 382

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  ++  +LE+    +I  +       I + INI+S         E +QA++ +     
Sbjct: 383 LIIPLSEVILEKACEAVIQMQQYGW--KIPVAINISSIHFKQQNFLESIQAILERYNMPA 440

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +  ++  +E  VM +   +   L RL+++G  +++DDFGT  S LSYL   P D +K + 
Sbjct: 441 NNFEIEVTERTVMNSANETVSKLVRLKQLGFKISIDDFGTGYSSLSYLVRFPLDCLKIDR 500

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +      +++ A++ +II M+  ++  ++A+ +     +  L +M CD IQ  + + P
Sbjct: 501 SFIQHIGSLDEKQAVVDAIIQMSHRLKMKVVAEGVEQAQQVDILRKMNCDIIQGYYYSKP 560

Query: 944 LGFNSILKLLK 954
           L  N +++ ++
Sbjct: 561 LPLNDLMEFME 571


>gi|299069558|emb|CBJ40830.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 914

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/580 (24%), Positives = 264/580 (45%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LAV    + V    +    +        IL +  G + G  
Sbjct: 328 AVQKDATERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRN 387

Query: 450 R-NWLPYI---HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           R + +  +   H  D                  L   + +     +  W  + I P+   
Sbjct: 388 RLDMMQRVVNEHGKDVALDVLPSKLVRQSGEPILGRIYGMVLKTGELIWARVNIIPIRRH 447

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +    DIT+ K++ + +   A  D LTG+ NR  F+  L   ++ +  D++ 
Sbjct: 448 GDAAPSSIMVSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDAAIERA-RDESR 506

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 507 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 566

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +IA  A  +  ++  P + +     +  SIG A +    I+ S++L++A+ AMY A
Sbjct: 567 VEGKRIAQLAERLLSAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 626

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A +NSEL LVY P   L    IVG EAL+
Sbjct: 627 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 686

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G +S +EF+ +AEE  +I  I  ++L R     + W          + +N+++
Sbjct: 687 RWNSVKLGAVSPAEFIPVAEETGLIVPIGEWVLRRACEQAVQWYQALGY-DFRMAVNLSA 745

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  +++T   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 746 RQFQTGDVVPTIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 805

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S + G       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 806 FGTGYSSLSYLQRFPISNVKIDRSFILGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 865

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+  +   +LL+    +V
Sbjct: 866 ADQVEFLAKAGCQEIQGYYIGKPVTADGFDRLLRAHLAVV 905



 Score = 38.0 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 26/112 (23%), Gaps = 4/112 (3%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +    V        +L          +      IH +D       L             E
Sbjct: 55  VDGRIVQGNQAATHLLAAPVPEWLAGV-ALTSVIHPDDVGLVMPSLSRAAAGSVPADPIE 113

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R+  AD     +          +G     + +    +  + +LE     A 
Sbjct: 114 HRLVRADFTHVLVTSEAAR-CTHDGQPAVMLVLREAGS--RHALERNAVQAR 162


>gi|224825197|ref|ZP_03698303.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224602868|gb|EEG09045.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 709

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 136/587 (23%), Positives = 272/587 (46%), Gaps = 15/587 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +         A    +Q + +        V  S D+++  D              ++G +
Sbjct: 130 LALQRRSLARANLAMAQQLHTSERMHRSLVEASPDLIFTLDERFCFTFANERTHGLIGYS 189

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRI 499
              + G   + L  +   D +  R +L     +R G+   EFR+ +   +         +
Sbjct: 190 PQELLGQ--SLLDLVLPVDAERVRYVL----EHRTGQRAIEFRIASRGGEIAERHFEASL 243

Query: 500 RPMSNSNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            P++     +  R  G+A D+T++K +   +   A+ D LTG+PNR  F DRL   +  +
Sbjct: 244 VPVALDLPQLSSRLYGVARDVTDKKHAEHRMAYLAYHDLLTGLPNRALFRDRLGLAIMQA 303

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                 +  V+ +D+D++K  ND  G   GD++L  + +R+  +L+  D LARL G+ F 
Sbjct: 304 KRKGR-QVAVLFVDLDRFKLANDTFGHIKGDELLKQVGQRLQCVLRECDTLARLGGDEFT 362

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L   +     A  A  + K +A P ++   ++ +T SIG A +         +L++A+
Sbjct: 363 ILLPDLSGKEDAALLAGKLVKEVAAPFSIDGDDVFLTVSIGIAVFPDDGDDIETLLRHAD 422

Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY  K +G N    F   + +  S R+ ++ ++  A+E  +  L Y P +      I+
Sbjct: 423 IAMYQVKAQGKNGFGFFLPVMDAAASQRLRMENEVRRALELEQFELYYQPQVEFDSRRII 482

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP  G +    F+ + EE+ ++K +  +++ER  + +  W+         +
Sbjct: 483 GCEALIRWPHPTRGLVPPGAFLGVIEEIGLMKPLTYWVIERACQTLREWKLAGLELS-RM 541

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+  + L+D++  + + A + +        ++  +E+  + + +   L L  L + GI
Sbjct: 542 SVNVPPEVLVDDDFYDYLIATVDRYGIRRQSFEIEITENAFIADQQAMSLKLAGLAEEGI 601

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            + +DDFGT+ S LSYL ++P  T+K + S +      ++   I+R+I+ +A  +   ++
Sbjct: 602 RVAIDDFGTQYSSLSYLRHLPVTTLKIDQSFVREIEAGKEDSPIVRAIVAIAAGLNLNLV 661

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           A+ +  E+    L  +G   +Q      P+  +   +LL +   ++ 
Sbjct: 662 AEGVETEVQADYLGSLGAVEMQGYLFGKPMPASDFRRLLHQEAAVMS 708


>gi|229136167|ref|ZP_04264920.1| Sensory box protein [Bacillus cereus BDRD-ST196]
 gi|228647326|gb|EEL03408.1| Sensory box protein [Bacillus cereus BDRD-ST196]
          Length = 735

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 168/734 (22%), Positives = 317/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   + +   T   +     LF ++      +
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRRERYSSSRISLIIGFTIILVYGYIHLFQLNTGMGTSS 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLW- 355
                I  ASI+L     I+Y   K            ++    ++P + +I  +   +  
Sbjct: 66  EVSYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFVVIQ 125

Query: 356 ------MAITKRLDNDIIQPALVGGL---VLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                 M I   L   ++    +       +++        Q           +    +R
Sbjct: 126 PWDDKFMLIGLVLSLVLLFLRQLYMWKDNQVLIDTYEQLTTQLEDEVEEGVSALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        +   +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++ + I   P+   N +++   GIA DIT   +  
Sbjct: 244 SLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L TIL+L+    N    VM +D+D++KKIND LG  
Sbjct: 301 KQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNTTN-DVAVMFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    +  A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILNKPYF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           + + E++VT SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IKDEELSVTPSIGIAMYPDYGNDVTELMKNADMAMYRAKANGKNRFIFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 HFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +         L  L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E   K L    CD+IQ    + 
Sbjct: 659 REFICGITNSPLEEAIIASIITLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|163943036|ref|YP_001647920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163865233|gb|ABY46292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 892

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 178/843 (21%), Positives = 336/843 (39%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---LHWNRWHAKVGYITFSGIACI 293
           GF  K +   S   L   +   I +    I F   +   L   R      ++        
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDLSSFRMLTTDTWVLIGYFIAQ 173

Query: 294 AILFCMS-------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           +++            Y     + I   T+  +  Y   F +  GM+       LI    +
Sbjct: 174 SLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGMETSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDN------------DIIQPALVGGLVLIVILI------------ 382
           + I    +   + K + +              I P     +    ++I            
Sbjct: 234 LLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFVVIQPWDDKFMLIGL 293

Query: 383 -------------------------GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
                                         Q           +    +R         D 
Sbjct: 294 VLSLVLLFLRQLYMWKDNQVLIDTYEQLTTQLEDEVEEGVSALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        +   +I   D +  +  L      R  
Sbjct: 354 VFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKKSLQITKEGRPQ 411

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L  E R +  +  ++ + I   P+   N +++   GIA DIT   +  + +   AF D 
Sbjct: 412 TL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARDITTLYEKQKQVEHMAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L TIL+ +    N    VM +D+D++KKIND LG   GD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKTILNTAQNTTN-DVAVMFLDLDRFKKINDRLGHDFGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  DI+AR  G+ F I+L    +    +  A  +   +  P  + + E++VT S
Sbjct: 528 RLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILNKPYFIKDEELSVTPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F       +++   ++ +L  A+
Sbjct: 588 IGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIFFSKEMSIAQNEIHFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++      ++L   +  ++ +T   P  + +  +ES
Sbjct: 708 RTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNRSDLIPTISKVLEETELKPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +         L  L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITNSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ    + P+    + +LL
Sbjct: 827 LEEAIIASIITLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSKPVSSKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|212633073|ref|YP_002309598.1| sensory box protein [Shewanella piezotolerans WP3]
 gi|212554557|gb|ACJ27011.1| Sensory box protein [Shewanella piezotolerans WP3]
          Length = 1073

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/569 (24%), Positives = 269/569 (47%), Gaps = 13/569 (2%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
              +  ++ S     S + +   +         P    I G     + G   + L   H  
Sbjct: 500  ARTSLQQASAVFEHSSEGIMVTNADNRIELVNPAFTKITGYTLEEVKGQKPSVLSSNHHQ 559

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                F + L   +       + E   +  D   +   + I  + N+ G I +YIG+  D+
Sbjct: 560  --PEFYSQLWHSITT-TNHWEGEIWNKRKDGNVYPEYLSITAVENAQGQISQYIGLFLDV 616

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            +  K+  + +   +  D+LT +PNR  F  RL   +D ++   N +  V  ID+D++K I
Sbjct: 617  SNHKQYEQDLWYKSNYDSLTKLPNRHQFSSRLQHAIDGASQT-NSQVAVFFIDLDRFKFI 675

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            N++ G A G+++L     R+  +L   D +AR  G+ F II    N        A  +  
Sbjct: 676  NELHGHAAGNEILKQSATRLESVLGPEDSIARFGGDEFVIISPQHNAIETAEQLAHKLVD 735

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +  P+ L   E  ++AS+G A +         +L+N+E AMY AK  G  H + F    
Sbjct: 736  VLVQPLKLDAIESNISASVGIAFYPEDGQDIEMLLRNSETAMYQAKRDGRAHFQYFSPEM 795

Query: 700  FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ +++ L  AV+ SE YL Y P++ +    +  +EALI+W  P++G IS + F
Sbjct: 796  NVEMLERMQLEQRLRKAVKKSEFYLEYQPVVDMTHGTVSSVEALIRWRDPEFGIISPALF 855

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE---LCEGM 814
            + IAEE  +I+ +  ++L +   D+ SW  Q +M  + I IN++ +  +++      + +
Sbjct: 856  IPIAEETGLIEPLGEWVLNQALADLSSWHAQGHM--LKIAINVSGRQCINSNGLSFYQVL 913

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +  + +   +   + +  +ES+++ +   S  +L  +R +G+ + LDDFGT  S LSYL 
Sbjct: 914  EEALLRHKIAAHYVHIEITESLLIEDKPYSLEILQSIRNLGVDIYLDDFGTGYSALSYLN 973

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P   +K + S +  +  ++    ++++I+ M +++E T++A+ I  E     L  +GC
Sbjct: 974  QFPISVIKIDKSFIDNATVSQSDAKLVKAIVMMGQSLEMTLVAEGIETEEQWDFLQSLGC 1033

Query: 933  DYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +Y Q   ++ PL   ++L  L+    + +
Sbjct: 1034 NYAQGYLMSKPLSSENLLTFLENETAINR 1062


>gi|149182637|ref|ZP_01861106.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1]
 gi|148849660|gb|EDL63841.1| hypothetical protein BSG1_13231 [Bacillus sp. SG-1]
          Length = 737

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 151/563 (26%), Positives = 277/563 (49%), Gaps = 20/563 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHIND 460
              ++    V  S DI+         V      + +LG     S+ G   + L      D
Sbjct: 179 ESEDQYRSLVEMSPDIIAVIR-DGKFVYMNAAGSRVLGAKDPDSLIG--EDILKVASEKD 235

Query: 461 RDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               R  +  +    R G L +E +    D       +   P+   +   ++ +G   DI
Sbjct: 236 VGMIRKSISEYSERVRAGNLIFEIKATRFDGVEIDAEVSAMPILYGSKPAIQIVG--RDI 293

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+KK+ E I   A+ D LT +PNR  F  RL  +L+ S    +    ++ +D+D++K I
Sbjct: 294 TERKKTEETIREMAYYDTLTSLPNRNMFKLRLNKLLESS---PSTSLAILFLDLDRFKVI 350

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G + GD +LV +  R+ ++L     + R  G+ F ++L + ++  K A  ++ + +
Sbjct: 351 NDTKGHSTGDRLLVKVADRLTDVLNKEGEVFRQGGDEFILLLDN-SDKEKAASLSVRILQ 409

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S   PI++  ++  VT SIG + +    +    ++K+A+ AMY AK RG N+ + +  + 
Sbjct: 410 SFTKPIDISGQDFFVTPSIGISMYPDDGMDQETLIKHADTAMYLAKDRGKNNFQFYNRNL 469

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            R+      ++ +L  A+E  +L L Y P + L   E++G+EALI+W+HP  G +S +EF
Sbjct: 470 NRNTTRKMDLENELRKALELQQLVLFYQPKVNLETGEVLGVEALIRWEHPTLGMVSPAEF 529

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  ++L    R    W+       I + +NI+ + L D++  + +Q  
Sbjct: 530 IPLAEETGLIVPIGKWVLWEACRQSKEWKKSGIGC-ISVAVNISVRQLQDDDFVQHVQQA 588

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T   PS ++L  +ES +M + E+S  +L +L+ +G+++++DDFGT  S L+ L ++P
Sbjct: 589 MKDTGLEPSLLELEITES-IMQDFEKSSRILNKLKNLGVTISIDDFGTGYSSLTNLRFLP 647

Query: 878 FDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            D +K + S +          K  +I+++II +  N+   IIA+ +  E  +  L +  C
Sbjct: 648 IDHIKIDKSFVDDIIDHSKHSKNGSIVKTIIDLGHNMNFNIIAEGVEEEEQVDFLLQNSC 707

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
              Q    + PL    +   ++E
Sbjct: 708 SIGQGYFYSRPLPPEQLEAYIRE 730



 Score = 88.9 bits (219), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 4/187 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS--QGIFSDGE 405
            ++ +     +   L             + I + I    + + +  G F   + +    +
Sbjct: 3   IVFIVVFIQIVQLILGLYFPVENFFNLFIQIALTITTLSLVYFMLKGIFKTTKELSESNQ 62

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           + +         +W  D+  + +  T  I  + G      +     W   I   D  +  
Sbjct: 63  KLNHIFESVDVAIWSHDLKSNNLLITQGIEKLYGREMEDFYKDFYLWKKVILPEDLQSLE 122

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +             +R+   D    W+  R  P  +  G+++ +  +  DIT++K+S
Sbjct: 123 GRQEVLQNGETCT--STYRITKPDGNVRWIQDRGIPTLDEKGNLIYFSSVLFDITDRKES 180

Query: 526 LEGILCN 532
            +     
Sbjct: 181 EDQYRSL 187


>gi|163750968|ref|ZP_02158200.1| sensory box protein [Shewanella benthica KT99]
 gi|161329258|gb|EDQ00256.1| sensory box protein [Shewanella benthica KT99]
          Length = 1104

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 138/554 (24%), Positives = 259/554 (46%), Gaps = 12/554 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  D +  + A   + + V   D       +     TI+G +   ++G   + L  
Sbjct: 555  LQRQLEDDVKLLAQAFGNTSEGVLIMDAAERIKVSNKAAQTIVGASDKQLNGKFFSELIL 614

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +     D    +L      +      E            + + +  M  S G+I  Y+ +
Sbjct: 615  VKEGRADEIVHLL-----QQGVSWTGEREFLREQGGPCPVWLNVSAMLGSKGNITHYVAV 669

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   +  SA     +  ++ +D+D+
Sbjct: 670  FSDITERKRTEADLRRLANYDVLTGLPNRSLFSTRLAQSI-HSAEHSGEKLALIFLDLDR 728

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV    R+   +     L R  G+ F I+L   +N   I     
Sbjct: 729  FKHVNDSYGHSMGDALLVEAANRLQSCITEEHTLCRFGGDEFVILLRDASNLDTINHICA 788

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             + + I  P  L  RE  ++ SIG + W      +  ++KNA+ AMYHAK  G  + + F
Sbjct: 789  QLLEQIKTPFELYGREFFISTSIGVSLWPDDARQAEVLIKNADQAMYHAKEEGRGNFQYF 848

Query: 696  RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                       + ++ +L  A+E  E  L Y P + +   ++++G+EAL++W H + G +
Sbjct: 849  SSERNLEALYHLRLEAELRKAIERDEFELHYQPQVDILKGDKLIGMEALLRWRHHEDGLV 908

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             +  F+ +AE   +I  I+ ++L +     + W  Q+      + +NI++      +  E
Sbjct: 909  RTDIFIKVAESCGLIVDIDRWVLRQACLQGVIW-SQSYDEIFKLSVNISAVHFRQADFIE 967

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G++ ++++T   P  +    +E V+M   + ++  L  LR +GI + +DDFGT  S L+Y
Sbjct: 968  GVKKILAETGLDPHLLGFEITEGVLMKELDTAKEHLRELRVLGIEVAIDDFGTGYSSLAY 1027

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L +   DT+K + S +      E   AI  SII +A+N++  ++A+ +  +  ++++   
Sbjct: 1028 LRHFDVDTLKIDRSFLVDIATNEADQAIASSIIELARNLKLNVVAEGVETKEQLEQIFSR 1087

Query: 931  GCDYIQDSHVASPL 944
            GC  IQ  + + PL
Sbjct: 1088 GCYVIQGYYFSKPL 1101



 Score = 95.4 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 9/182 (4%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                      ++  L+  L+ I + I     + V A    +  +    ER   ++ GS 
Sbjct: 391 FVKQYWWQMTWVKSLLLFTLLCICVGIILYRQRQVKAFKRINTALVESEERLRQSLKGSN 450

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVG 473
             +W+W       +     A           G I   L    IH  DRD      +S + 
Sbjct: 451 SELWEWRQDSQMFSLENQWAE-----KEDDRGNIILRLEGFPIHREDRDQVLNAWESMLK 505

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIANDITEQKKSLEGILC 531
               R   E+R R  D  + W  +  RP+     +G ILR  GI +DIT Q++  + +  
Sbjct: 506 GSSDRFDVEYRHRREDKSWGWTRVSGRPVEVNAESGRILRVAGIYSDITLQRQLEDDVKL 565

Query: 532 NA 533
            A
Sbjct: 566 LA 567


>gi|163748444|ref|ZP_02155698.1| sensory box protein [Shewanella benthica KT99]
 gi|161332022|gb|EDQ02699.1| sensory box protein [Shewanella benthica KT99]
          Length = 819

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/570 (25%), Positives = 263/570 (46%), Gaps = 12/570 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
           V       + +  + E        S + V   D   + + T    + I G +   + G  
Sbjct: 255 VARNISQHKAVQEELEITGRIFENSVEGVLITDRKGEILETYGAFSEITGYSKDEVVGKN 314

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R +    H  D+  F  +    +   +G+   E   R  +      ++ +  +S  + +
Sbjct: 315 PRMFSSGRH--DKAFFTELWSRLIH--KGKWHGEIWNRRKNGAVFPQMLTVSSVSGEDSE 370

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  ++ + +DIT QKKS   +   A+ D LT +PNR + +  +   +  +        TV
Sbjct: 371 VRYFVAVFSDITLQKKSEAELAHQAYHDPLTQLPNRMALISLIEQDIRHAEVQQGQLATV 430

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             ID+D +K IND  G   GD +LV L  R+  L    D LAR+ G+ F ++L     + 
Sbjct: 431 -FIDVDFFKHINDSFGHLAGDKILVELAGRLTSLKGAEDTLARIGGDEFVVLLPQVEGNE 489

Query: 629 KIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           ++      +RK+   P  + + E I +TAS+G + +      S  +L+NA+ A + AK  
Sbjct: 490 ELTLALSKLRKAFEQPFIIDDNEPIRLTASMGVSVFPHDGKDSYTLLRNADSAKHRAKLD 549

Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    +  S      + + ++  L  A++    +LVY P +  +  E  G EAL++W 
Sbjct: 550 GRNSYAFYTESLTQESREHLKLQSALHAALDKQNFHLVYQPKLDFVTMETTGFEALLRWC 609

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P  GN+S ++F+ IAE++ +I  I L++L++  +  + W  Q       I +N+A + L
Sbjct: 610 DPVLGNVSPAKFIPIAEKIGLINEIGLWVLKQACQQGVKWISQGKKFG-RIAVNVAGQQL 668

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                 + ++ ++ +T +  S ++L  +ES +M +PE     L RL ++GI L++DDFGT
Sbjct: 669 QRTSFVDEVKQVLQETGFPASALELEVTESFMMSDPEVVIRDLQRLGEMGIELSIDDFGT 728

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P   +K + S +          AI +++I + + +   +IA+ +  E  
Sbjct: 729 GYSSLSYLKKLPIHKLKLDQSFVKDLPLDLDNAAIAKAVIALGQALNLKVIAEGVENEAQ 788

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              L   GCD  Q    + P+   ++   L
Sbjct: 789 ATFLRDNGCDEAQGYLYSKPMLPEALNDFL 818



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 2/124 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L +    + +W  D     +     +    G     +             +  + F  
Sbjct: 149 LQLFIDSLKEHIWIKDTSGRYMVCNQSVERAWGKTREEIINKTDE--EIFVADLANEFIQ 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +         E +    D   +W+     P+   +G++L  +G+A +I++ K   
Sbjct: 207 SDRDAIHKGIQITTEECKGLIEDVDKYWLETSKVPLLTEDGELLGVVGVARNISQHKAVQ 266

Query: 527 EGIL 530
           E + 
Sbjct: 267 EELE 270


>gi|238762320|ref|ZP_04623291.1| Sensory box-containing diguanylate cyclase [Yersinia kristensenii
           ATCC 33638]
 gi|238699305|gb|EEP92051.1| Sensory box-containing diguanylate cyclase [Yersinia kristensenii
           ATCC 33638]
          Length = 834

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 137/558 (24%), Positives = 267/558 (47%), Gaps = 17/558 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +  ER       + D +W+ D        +    TI GL+     G   + L     
Sbjct: 280 ALIASEERFRHMAEAATDWLWETDANLRITYLSQRFTTITGLSVERWLGRNLDSLLNC-- 337

Query: 459 NDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            D    R+ L  + +   R  LQ  +   +A        +  +P+   N + + + G  +
Sbjct: 338 -DHIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRVYAKPII-KNDENIGFRGTVS 393

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT++ ++ E I   +  D+LTG+PNR    + L + L       +    ++ +D+DK+K
Sbjct: 394 DITQEIEAQERIQHLSLHDSLTGLPNRMRMKEFLESKLRNLTAAPH-PLVILNVDLDKFK 452

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +I+   ++  +I D    +
Sbjct: 453 PVNDTFGHMAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIITGLSSIKEIEDLCTRV 512

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I  P  + +++I ++ASIG A      + + E+L+ A++AMY AK+ G N    +  
Sbjct: 513 IDRIESPYIINDQDIFISASIGIALAPQDSMQAEELLRFADIAMYEAKNSGRNRWSFYSS 572

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      ++  L  A++++E  L Y P  R+   ++ G EAL++W+HP  G +   
Sbjct: 573 EMNDRLMQRSELERFLRQAIKHNEFNLYYQPRYRIAGTKLTGAEALVRWNHPVLGLLMPD 632

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I AI+ + + +  +D  +W        + + +NI++ +     L E ++
Sbjct: 633 QFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIVSVNISAIEFRSQHLIERVR 687

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T     R++L  +E +++ + + +   +  L+ +G+ L++DDFGT  S L+YL  
Sbjct: 688 QVLRQTGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMDDFGTGYSSLNYLRR 747

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +   T+ R   +I+  II +   +  T+ A+ +     ++ L  + CD
Sbjct: 748 FPFDGLKIDKSFIDELTQSREGQSIVEGIINLGHALSMTVTAEGVETTEQLEHLQALMCD 807

Query: 934 YIQDSHVASPLGFNSILK 951
             Q   +  P+  N +L 
Sbjct: 808 EAQGYLLGKPMKLNELLN 825


>gi|229014517|ref|ZP_04171635.1| Sensory box protein [Bacillus mycoides DSM 2048]
 gi|228746867|gb|EEL96752.1| Sensory box protein [Bacillus mycoides DSM 2048]
          Length = 675

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/562 (26%), Positives = 266/562 (47%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        +   +I  
Sbjct: 118 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDP 175

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      R   L  E R +  +  ++ + I   P+   N +++   GIA D
Sbjct: 176 QDHELLKKSLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARD 232

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L TIL+L+  + N    VM +D+D++KK
Sbjct: 233 ITTLYEKQKQVEHMAFHDALTGLPNRRKFEKDLKTILNLAQNNTN-DVAVMFLDLDRFKK 291

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    +  A  + 
Sbjct: 292 INDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFIAEQIL 351

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  + + E++VT SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 352 TILNKPYFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIFFSKE 411

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E  L Y P +    ++I+G EAL++W HPK G +S ++
Sbjct: 412 MSIAQNEIHFLEGELSKALQQNEFSLEYQPQVNTKTKQIIGFEALVRWKHPKLGIVSPAQ 471

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++        L   +  
Sbjct: 472 FIPLAEETGFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHAYLISTISK 530

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +         L  L+ +GI +++DDFGT  S L+YL   
Sbjct: 531 VLEETELKPEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKY 590

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L    CD+
Sbjct: 591 PINTLKIAREFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWKFLHEQNCDH 650

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ    + P+    +  LL ++
Sbjct: 651 IQGFLFSKPVSSKDVWMLLHKK 672


>gi|294141998|ref|YP_003557976.1| sensory box protein [Shewanella violacea DSS12]
 gi|293328467|dbj|BAJ03198.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1018

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 150/557 (26%), Positives = 254/557 (45%), Gaps = 15/557 (2%)

Query: 404  GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             E   LA      S + +   D     +T     + I G     +     + L       
Sbjct: 452  EESLKLAASVYNNSSEAMSVQDRQGKIITINSAFSEITGYLENEVIDQHIDILRC---ER 508

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             +  +    S      G+ Q E  ++  +   + + + I  + +S G++ R + + +DIT
Sbjct: 509  TNKTQFEQMSLQIIETGKWQGEIWLKHKNATEYIVWLTINTIYDSRGEVYRRVALFSDIT 568

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K++   I   A  D LTG+PNR+  L+ L T L  S  +      +M +D+D +K++N
Sbjct: 569  EKKQAEHIIWKQANYDPLTGLPNRRMLLEYLGTELLKSDRNKQ-HLALMFLDLDYFKEVN 627

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG  VGD +LV   +R+   ++  D++ARL G+ F ++L + ++   +   A  +   
Sbjct: 628  DTLGHDVGDLLLVETAKRLKSCIRESDVVARLGGDEFTLVLSAIDDHKGVDRVAANILTR 687

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            ++ P NL      ++ASIG   +     +   +LK+A+ AMY AK  G N    F  S  
Sbjct: 688  LSEPFNLGNDTAFISASIGITLYPDDASSIESLLKHADQAMYAAKDLGRNRFHYFTASMQ 747

Query: 701  --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+++  DL  AV N E  + Y PII L + EI   EALI+W HP+ G +S  EF+
Sbjct: 748  EEARYRMILIRDLRQAVNNKEFEIFYQPIIDLPNGEIHKAEALIRWHHPERGLVSPGEFI 807

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQA 816
             +AEE  +I  I  ++  + A+    WRD+  +  + I IN +     D      + +  
Sbjct: 808  PVAEETGLIIEIGNWVFSQAAKQCAHWRDKYGVE-LQISINKSPVQFRDEGDSFEDWIVQ 866

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             + +   + + I +  +E +++         L   R  GI ++LDDFGT  S L+YL   
Sbjct: 867  -LKELKLASNSICVEITEGLLLDASMGVSEKLLAYRDAGIQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S           + +  +II MA  +  T+IA+ +  E     LT+ GCDY
Sbjct: 926  DIDYLKIDQSFTRNLESDTDDVTLCEAIIVMAHKLGMTVIAEGVETEYQRDILTKAGCDY 985

Query: 935  IQDSHVASPLGFNSILK 951
             Q    + P+       
Sbjct: 986  GQGYLFSRPIPAADFED 1002



 Score =  121 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                + S  E+ +L +  S   +WDWDI  ++V      A +LG +   +    R W+ 
Sbjct: 320 QAESAMRSSQEQLALVLSSSELGLWDWDIKTNKVDRNERCAELLGCSVYEIQHNERIWIN 379

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYI 513
            IH  DR      +D+ +     +   E+R+ A   +  W++   + +  ++ G  LR  
Sbjct: 380 GIHPQDRVAVLHSVDAHLKGDTVQHSIEYRLVALSGETRWILDSGKVVSRDAKGVPLRMC 439

Query: 514 GIANDITEQKKSLEGILCNA 533
           G   DIT++K+  E +   A
Sbjct: 440 GTHTDITDRKRVEESLKLAA 459



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/325 (10%), Positives = 81/325 (24%), Gaps = 19/325 (5%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI----IFLFMYLHWNR 277
              + V    + +   F+   V         +     +      I    +          
Sbjct: 5   VIYSLVQNAALLLAMVFVYDAVPRKQQNEYFFIWRLSVGAVIGGITIMTMMTPWEYQTGV 64

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIA--RITLASIVLYYTYFIIYHGMKGYE 335
           +      I          L             +    I + + +       ++  +  Y+
Sbjct: 65  FFDTRSVILAISGLFFGALPTFIAVSIAAVYRLMEGGIAVWAGLGVIISSGLFGSLWRYK 124

Query: 336 RAV---------LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           R           L +  +IL  +    +++       N ++Q +L   L+  V      +
Sbjct: 125 RKAAIADLSYKELYLFGFILNLLSLSWMFILPFDMAINILMQLSLPVLLIFPVATTLLGL 184

Query: 387 IQHVLATGYFSQGIF-SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +            I   D              +    + +  V   P +  +L      +
Sbjct: 185 LLSRRLEIERDAKIQLQDDFMFRSQFNIGNIGIGISTVDQHWVKVNPRVCQMLKYTQAEL 244

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 W+   H  D        +  +       + + R  A D    +  + +      
Sbjct: 245 LTK--TWVEMTHFEDLQTDLLQFERMLQGEIDEYEMDKRFVAKDGSIVYTHLTVACQR-V 301

Query: 506 NGDILRYIGIANDITEQKKSLEGIL 530
           N  +   I    DIT QK++   + 
Sbjct: 302 NAKVQLVISGLLDITSQKQAESAMR 326


>gi|94270720|ref|ZP_01291807.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93450693|gb|EAT01779.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 941

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/587 (24%), Positives = 250/587 (42%), Gaps = 17/587 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ +++              E  +  +    +     D     V+     A   G  
Sbjct: 348 MLASLAEYLAPLLAARLESRRAEELVARVLETIDEGFIIIDHEFKIVSANRAYAESAGYP 407

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498
              + G     +   H  D+  +    D  V +                A  +  ++  +
Sbjct: 408 LAEVIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPHTAVHTHYTAAGEPLYVETK 465

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             P+  +  G + R I +  DIT++K   + I   AF D LT +PNR+ F DRL      
Sbjct: 466 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAFSA 525

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           SA        V+ +D+D +K +ND  G  VGD +L     R+ E ++  D ++R  G+ F
Sbjct: 526 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAERLQEAVRANDTISRQGGDEF 584

Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            ++L + +     A       A  +R ++  P +L   E  +  SIG + +      + E
Sbjct: 585 MVLLNNLSPERHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGLSLFLGHDTPADE 644

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           + K A+ AMY AKH G N V  F             +  DL  A+   +  L Y P    
Sbjct: 645 LFKRADAAMYQAKHAGRNQVRFFDPEMQAELEQASALVVDLRQAIWQGQFQLHYQPQTA- 703

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EAL++W HP+ G +S  +F+ +AEE  +I AI  ++LE     + +W D   
Sbjct: 704 NDGRIIGAEALLRWRHPERGPVSPMQFIPLAEESNLILAIGRWVLEEACGQLAAWADLPA 763

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++++     E    ++ +++ T   P  +KL  +ES+VM     +   +  
Sbjct: 764 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMQE 823

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR +GI  ++DDFGT  S L+ L  +P + +K + + +          AI+ +II M + 
Sbjct: 824 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 883

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  +IA+ +  +  +  L R GCD  Q    + P+       LL  
Sbjct: 884 LDIQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 930


>gi|229105893|ref|ZP_04236518.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228677524|gb|EEL31776.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 909

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 183/854 (21%), Positives = 340/854 (39%), Gaps = 30/854 (3%)

Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175
             F   L    +         S  R+   D   F   ++P      +       L    L
Sbjct: 66  RLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFAL 116

Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYIS 233
                     +       I      + A F   +Y++   ++ + T +    +V L Y  
Sbjct: 117 AFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYPM 176

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSGI 290
            D  FL   +NL    L +        L S+LI++      Y +   +       T +  
Sbjct: 177 ADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTPF 236

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF-I 349
             + ++               +  +     +     +          ++ I A  +   I
Sbjct: 237 YQVVLVLAAIACILHTKEPEKQEQVLLTPKFGESIRLSLPYISVVMLIIFILAEYVFAPI 296

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDGE 405
             IGL +  T  L    +       L+L  +        Q  L T    +    ++ + +
Sbjct: 297 VVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQQ 356

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                     D ++  D+  + +       T+LG  +  +      +   I+  D +   
Sbjct: 357 MFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEII 414

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                        +  E R    +   +++ +   P+   +  I     +  DITE K+ 
Sbjct: 415 NAFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQQ 471

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A+ D LT + NR++F   L   +  +         VM +D+D++K IND LG 
Sbjct: 472 QEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFLDLDRFKVINDTLGH 530

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L+++ +R+  L      LARL+G+ F I++ +      +   A  +  ++  P 
Sbjct: 531 RVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVVAMNKPF 590

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +  + + ++ SIG A +  +      +L++A++AMY AK++G N    +    ++    
Sbjct: 591 EIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIER 650

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++DL LA+ N E YLVY P I     +I+G EALI+W HP  G+IS  EF+ I EE
Sbjct: 651 KARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEE 710

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +  +  ++L+     +  W        + I +N+++K+   N+L E +  +++    
Sbjct: 711 TPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQV 769

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + L  +E + M N + +   L +L++ GI   +DDFGT  S L+YL   P DT+K 
Sbjct: 770 DPKHVTLELTERIAMINEKETLSRLKQLKEYGIQTAIDDFGTGYSSLAYLSIFPIDTLKV 829

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                       +  AI  +I+ +A  +  ++IA+ I  E  +K L +  C Y+Q  + +
Sbjct: 830 PREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYFS 889

Query: 942 SPLGFNSILKLLKE 955
            PL     +K L++
Sbjct: 890 KPLTSKQFIKFLQK 903


>gi|207728363|ref|YP_002256757.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591609|emb|CAQ57221.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 636

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 152/567 (26%), Positives = 263/567 (46%), Gaps = 23/567 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    + +   D  R      P  A +LG++  ++ G          I++ D     +D
Sbjct: 57  MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 116

Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513
                 +   R +L   F +R  D +  W+     P+    G+                +
Sbjct: 117 WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQPYAVL 176

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D+
Sbjct: 177 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLDL 235

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG   GD +L  +  R+    +  D +ARL G+ F ++L S  + +     
Sbjct: 236 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRRV 294

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P ++  +E+ V  SIG A         + +L+ A+ AMY AK RG N+ +
Sbjct: 295 AERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 354

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W+   +G 
Sbjct: 355 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFGR 414

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L 
Sbjct: 415 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 473

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++ +      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S LS
Sbjct: 474 GMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 533

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L  
Sbjct: 534 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLRE 593

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCD  Q   +  PL   ++  L++E 
Sbjct: 594 IGCDEYQGYLLTRPLEPAAMHDLVREH 620


>gi|94265329|ref|ZP_01289085.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93454186|gb|EAT04510.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 989

 Score =  527 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 145/586 (24%), Positives = 273/586 (46%), Gaps = 13/586 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPD 433
           L  +      +  +       + + +  ER  L   A+  S D V   D+    ++  P 
Sbjct: 256 LYGLPATLEQVAQLRQLQDEQRALRASEERHRLQVAALNASRDGVVITDLEPKIISVNPA 315

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
             TI G     + G   + L   H +DR  ++++         G  Q E   R  D + +
Sbjct: 316 FTTITGYHEKEVRGKSPSLLKSGH-HDRAFYQSMWAQLKQQ--GFWQGEVWNRRKDGEVY 372

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             ++ I  + +  G+   Y+G+  D+T  ++S E +   A  D+LTG+PNR      L  
Sbjct: 373 PELLSISTVYDEAGEPSHYVGVKTDLTNLRRSEERLQHLAHHDHLTGLPNRLLLEALLEH 432

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L+ +  + + R  V+V++ D+++ IN+ +G A GD++LV++ +R+  +L+  D LARL+
Sbjct: 433 ALERAQREQS-RLAVLVLNCDRFRTINESVGYAAGDELLVAVVKRLQSILRAEDTLARLA 491

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSE 672
           G+ F ++L    +  ++      + +++  P  L    E+ + AS+G + +     T + 
Sbjct: 492 GDEFALVLEGLGDYREVEFTLQRLWQALEQPFALPDGYEVYIQASVGISFYPQDDDTVAG 551

Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +L  A+ A+  AK  GGN         +      + ++  L  A++  E  L Y P + L
Sbjct: 552 LLVRADGAVNQAKDGGGNRCYYATSTLNEESRRGLELEAALRRALQQREFLLYYQPKVAL 611

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               I G EALI+W  P  G ++  EF+  AE   +I A+  ++++   R +  WR++  
Sbjct: 612 AGGRITGAEALIRWQRPGHGLVAPGEFIPAAERSGLIVAMGAWVIDEGCRQLRRWREEGL 671

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + +N+++       L   ++  +++   +  ++ L  +ES++M  PE +   +  
Sbjct: 672 G-DLRLAVNVSASQFRAPGLVTALKQALAEHRVAAGQLTLELTESMLMSEPEAAIARMEE 730

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+ +G+ L LDDFGT  S  + L   P D +K + S + G   +     I  SII MA  
Sbjct: 731 LKTLGVELALDDFGTGYSSFANLSRFPIDQLKIDRSFVEGIVSSPDAATIAASIIAMAHQ 790

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +   ++A+ +  +     L R GCD IQ    + PL      +LL+
Sbjct: 791 MRLKVVAEGVENQPQANYLRRNGCDEIQGFLFSKPLPAADFARLLE 836


>gi|254687210|ref|ZP_05151068.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724703|ref|ZP_05186486.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254755818|ref|ZP_05207850.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762158|ref|ZP_05214004.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
          Length = 604

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 43  EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 101 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 217 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 336

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 396

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 397 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 455

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 456 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 515

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 516 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 575

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 576 NCDHIQGFFISKPVSSKDVWRLLHKK 601


>gi|331007322|ref|ZP_08330521.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989]
 gi|330418884|gb|EGG93351.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC1989]
          Length = 703

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/574 (25%), Positives = 260/574 (45%), Gaps = 15/574 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                +         SLAV  S   V   D         P      G  +    G    +
Sbjct: 127 ARVAQRQAEQKVSILSLAVEQSPVSVIITDADGIIEYVNPKFEYTSGYLAEEAIGRQLGF 186

Query: 453 L---PYIHINDRDNFR-----TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  H              +L + +  + GR   E      D   +W  + I P++N
Sbjct: 187 TLLSNASHAGKAAKAEEKTEGQVLWAHIRQQ-GRWGGEQCSVHKDGMLYWEYVNISPLAN 245

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +++R++ +  DIT ++   E +   A+ D LTG+PNR   ++ ++  +  S+ + +L
Sbjct: 246 EEQEVIRFVSVQEDITVRRSYEEQLKNQAYYDELTGLPNRTLIMETISHAIA-SSYNTSL 304

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ ID+D +K +ND LG ++GD++LV    R+   +    +L R  G+ F ++L   
Sbjct: 305 PLALLCIDLDHFKNVNDTLGHSIGDELLVQAASRLAGTISSVQLLGRTGGDEFFVLLPEI 364

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                I      + +    P  + E    +T SIG A++      S  +LKNAELAMY A
Sbjct: 365 EGEQAIQAMVDNIMQMFVEPFIINEYPHYITVSIGAANYPEHSTDSHTLLKNAELAMYQA 424

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + F   ++   ++RV I+  L      +EL L+Y PII     E+V  EAL+
Sbjct: 425 KKAGRNQCQLFSEAINIQLNERVAIESGLRGVAARNELELLYQPIIDSNTNEVVKCEALL 484

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W     G +    F+ IAE+  +IK +  +++++  +D+  +  Q     +   INI+ 
Sbjct: 485 RWKTSDGGYVMPDVFIPIAEDTGLIKQLGEWVIQQACKDLK-YLQQHINANMKFAINISP 543

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L +    + + A + +   SP  ++L  +ESV++ +   ++  L  L   GI L++DD
Sbjct: 544 NQLKETSFSQVIAAKMEEYQLSPEALELEITESVLINDLGETKANLEALCDKGIRLSIDD 603

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L YL   PF T+K + S ++          +  +II MA N++  ++A+ +  
Sbjct: 604 FGTGYSSLGYLQKYPFSTLKIDRSFVSQIEINNNNSKLTETIITMAHNLDMKVVAEGVET 663

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           E   + L R  CD+IQ    + P+    +++ L+
Sbjct: 664 EGQQQFLKRCQCDFIQGYLYSRPVKLELLVEKLR 697


>gi|229164248|ref|ZP_04292181.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228619188|gb|EEK76081.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 885

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 175/868 (20%), Positives = 354/868 (40%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 28  SYILYFSNMKKGLPRLFWMILSVGTLSYFIGDIVVAYQRLILKDFYTF---VDPSD--FF 82

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
            +   T       L+E     +      L+  I      + A F   +Y++   ++ + T
Sbjct: 83  YLLFLTSFALAF-LYEI--IYNRDLLEKLF-MICDICIIVTAQFTLSYYLLIERTIHVFT 138

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y  +D  FL   +NL    L +        L S+LI++      Y +  
Sbjct: 139 TSYIDIFVQLTYPMVDLLFLLIGINLLFRPLSLLPKRVGALLGSALILYATTDAIYAYIK 198

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +       T + +  + ++               +  +     +     +         
Sbjct: 199 YFTPDYSMFTVTPLYQVVLVLVAIACILHTKEPEKQEQVLLTPKFGESIRLSLPYVSVVM 258

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQP---ALVGGLVLIVILIGFTVIQHVL 391
            ++ I    +     +   M       + + +++     L+   +   + +   +     
Sbjct: 259 LIVFILVENVFAPIVVIGLMITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTE 318

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 319 DLVKQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 376

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   I+  D +                +  E R    +   +++ +   P+      I  
Sbjct: 377 YYSLIYEEDLEEIIHAFHHVKKG--SSISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISG 433

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR+SF   L   +  +         VM +
Sbjct: 434 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRSFHQYLEKAIARAKLTKRP-FAVMFL 492

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ RR+ ++      LARL+G+ F I++ +      + 
Sbjct: 493 DLDRFKVINDTLGHRVGDLLLIAVARRLEQISTSNMKLARLAGDEFTILIENYKKKPDVQ 552

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG N 
Sbjct: 553 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGKNG 612

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL LA+ N E YLVY P I +  ++I+G EALI+W HP  
Sbjct: 613 SSLYTKELYKKIERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALIRWKHPLL 672

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ I EE   +  +  ++L+     +  W+       + + +N+++K+   N+
Sbjct: 673 GDISPCEFIPIVEETPQVIPLGHWVLKESCYQLRMWQ-TLGYTDLKMSVNLSAKEFQQNQ 731

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  ++ +   +P  + L  +E + M N + + L L +L++ GI  ++DDFGT  S 
Sbjct: 732 LIENISQILQEVKVNPKSVTLELTERIAMINEQETLLRLKQLKEYGIHTSIDDFGTGYSS 791

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L
Sbjct: 792 LAYLSIFPIDTLKIPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFL 851

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C Y+Q  + + PL     ++ L++
Sbjct: 852 QKNNCKYMQGYYFSKPLTSKQFIRFLQK 879


>gi|319425658|gb|ADV53732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1018

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 149/557 (26%), Positives = 258/557 (46%), Gaps = 10/557 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + I G  +  + G     L Y  IN
Sbjct: 451  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSDITGYKAKEVCGQHIRLL-YCDIN 509

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + ++    ++G+ Q E   R  + + + + + I  + +  G   R + + +DI
Sbjct: 510  GRDFYDKMNNAI--NQKGQWQGEMLQRRKNGEEYVIWLTINTIKDKEGMPYRRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L   +  +  + +    ++ +D+D +K++
Sbjct: 568  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQD-HFALLFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG  +GD +L+    R+   ++  D++ARL G+ F ++L +  +   I   A  + +
Sbjct: 627  NDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    +TASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RIAEPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + GN+S  EF
Sbjct: 747  QEYAKYRMRLIQDLRQAVSNKEFELHYQPIVSLTTGEVAKAEALIRWTHAERGNVSPGEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WRD+     I I +N +     D   L      
Sbjct: 807  ISVAEDTGLIVEIGNWVFEQAARQSAAWRDELG-VDIQISVNKSPIQFRDEGALLHNWLE 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 926  DIDYLKIDQSFTRHIDTDTNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLSAGCDY 985

Query: 935  IQDSHVASPLGFNSILK 951
             Q    + P+      +
Sbjct: 986  GQGYLFSKPIAAIDFAQ 1002



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+       V A     + + +  E+  L +  S   VWDWDI  DR+      A ILG 
Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDRIERNARSADILGC 365

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R+   + Q  W++   +
Sbjct: 366 DIDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETPQHKMEYRLNTLNRQVRWILDTGK 425

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 78/263 (29%), Gaps = 14/263 (5%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           I+      +  L  ++       +         + +  +  +I    + Y ++ L   + 
Sbjct: 75  ISGLFFGGLPTLIAVALTGFYRLSIGGDAMWIGVAVIVSSGLIGVIWRQYRKSYLANISA 134

Query: 345 --ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGY 395
             +L F + + + M +        +   L+  L L V+        +   ++        
Sbjct: 135 KEMLCFAYTVHIVMLLWFFTLPLPVALPLLAKLSLPVLTVYPLATWLLSRMLSRRFELER 194

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q    D              +    I +  +   P +  +L      +      W   
Sbjct: 195 DEQIRLQDDFLFRSQFTVGNIGIAITGIDQKWMKVNPHLCQMLKYTENELLN--MTWKQL 252

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H +D +      +  +  +    + + R  A D    +  + +     +N  +L  I  
Sbjct: 253 THPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDGSIVYTHMTVAC-KRANNRVLLVIAG 311

Query: 516 ANDITEQKKSLEGILCNAFQDNL 538
             D+T Q  +L      A ++ L
Sbjct: 312 YLDVTAQ--TLADREVLASREQL 332


>gi|254490544|ref|ZP_05103730.1| hypothetical protein MDMS009_876 [Methylophaga thiooxidans DMS010]
 gi|224464288|gb|EEF80551.1| hypothetical protein MDMS009_876 [Methylophaga thiooxydans DMS010]
          Length = 1123

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 150/648 (23%), Positives = 285/648 (43%), Gaps = 15/648 (2%)

Query: 326  IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
            +I++    + R+         +   F+   +     L        +   + L    +   
Sbjct: 472  LIFNPTNSFIRSASTNLTQFALIGGFLLTGLFAFLFLSITGRTHRISTEVTLRTEELSEA 531

Query: 386  VIQHV---LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
              +     +      + +    ++  L   A   + + +   D  +  +      + I G
Sbjct: 532  TKRAQDSEMRIRDVLKEMQLTEQKLLLSDVAFNSTSEAMMITDKSKKIIVVNSAFSDITG 591

Query: 440  LASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                 + G   ++L   +  +D         + +    G  + E + R  D       + 
Sbjct: 592  YDGTEVIGRYPSFLVSGLTKSDFQQLSESFAAAMKAY-GIWRGEIQCRHKDKTMFPAYVS 650

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +  + +++G+I   +G+ +DI+E K++   I  +A  D LT +PNR+ F DRL   +   
Sbjct: 651  MSAVYDTDGNICNMVGVFSDISEVKEAQAKIERHANYDILTDLPNRRLFTDRLQQAILRC 710

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                N +  +M +D+D++K +ND LG   GD +L  +  RI   ++  D +ARL G+ F 
Sbjct: 711  GRH-NEKLCLMFLDLDRFKDVNDTLGHEFGDQLLKQMAVRIQACVREVDTVARLGGDEFT 769

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            IIL   +      + A  +   I  PI + E+ + VT S+G   +    I S  +++NA+
Sbjct: 770  IILSEFDGKSHAVNIAQKLISEIEKPITVQEQTLRVTTSVGITFYPDDAIDSGMLIQNAD 829

Query: 679  LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE-I 735
             AMY AK  GG+  + +      S      I  +L  A+E  E+ + Y P+I    E   
Sbjct: 830  RAMYAAKDMGGSAFKFYTTELELSWLSRTFILNELEAAIEKGEIEVYYQPLIPANTETAC 889

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               EAL++W HP+ G IS ++F+  AE + MI+ I+ F+  ++ + I +W+       + 
Sbjct: 890  QSAEALVRWQHPERGLISPADFLPQAERMGMIEKIDDFVFSQVCQQIKTWQANGIG-DVH 948

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            + +N ++ +  +        A I +   +   I L  +ESV+M     S  LL +LR+ G
Sbjct: 949  VSVNRSAHNFGNQRGRLDWLAYIREQGINAGLITLEITESVLMRRHAESGHLLKKLRQAG 1008

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
            + + +DDFGT  S LSYL  +  D +K + S +      +   AI+ +I  MA+++   +
Sbjct: 1009 VQIAVDDFGTGYSSLSYLKEMDIDYLKIDRSFIRDLEADDNDRAIIEAITGMARHLGIEV 1068

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            IA+ +      + L ++GC ++Q    A P+  +   + L      +K
Sbjct: 1069 IAEGVETLSQKEILEKIGCHWLQGYFFAKPMPVDVFEEFLASANNALK 1116


>gi|71907538|ref|YP_285125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71847159|gb|AAZ46655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 832

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 130/589 (22%), Positives = 257/589 (43%), Gaps = 33/589 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIATILG 439
             + + +         +          V  +    W  D+    +           ++LG
Sbjct: 244 IVLSRDITDRKNAEHALRESESLMRAIVDNTPVEYWARDLEGRCIMENALVVEHWGSLLG 303

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                           +  ++   ++              + E++V     Q       +
Sbjct: 304 KRPED---------SGVSPDELAVWQENNRRVYEGEVIEAEVEYQV---GGQTRIFNNVV 351

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+   +G  +  +G   DIT++K++ E I   AF D+LT +PNR+   DRL   L  SA
Sbjct: 352 APIK-VDGQTIGIVGFNQDITDRKRNEEEIHRLAFYDSLTHLPNRRLMFDRLEHALIGSA 410

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   +++ID+D +K +ND  G  VGD++L+ + +R+   ++  D  ARL G+ F +
Sbjct: 411 RR-KSHGALLLIDLDNFKFLNDTHGHEVGDELLLEVAKRLKTCIRQGDTAARLGGDEFVV 469

Query: 620 ILISENNSL----KIADFAIAMRKSIAMPINLL------EREITVTASIGFASWTSSKIT 669
           IL   + +     +    A  ++  +  P +L+        +    +SIG A +  + +T
Sbjct: 470 ILEDIDGAGNGTIQAELIAGHIQAQLNHPFSLVRPPERLSIDYRCASSIGIALFDDTMVT 529

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727
           + E+L+ A+ AMY AK  G N +  F        + R  ++ +L  A++  + +L +   
Sbjct: 530 AKELLRRADTAMYQAKAAGRNTLRFFDPEMQAAVTHRAALETELRKAIDEQQFHLCFQVQ 589

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +        G EAL++W+HP  G I  + F+ +AEE  +I  I  ++L    R + +W  
Sbjct: 590 MD-QSGRPTGGEALLRWEHPTRGTIPPASFIPLAEETGLIVPIGQWVLATACRQLAAWSQ 648

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           Q     + + +N++++        + ++ L+ +T    +R+KL  +ES+++ + E     
Sbjct: 649 QPETSGLTLAVNVSARQFRQARFTDQLRDLLLQTGAPATRLKLELTESMMLEDTEAIIGR 708

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905
           +  L+++GI  +LDDFGT  S L+YL  +P + +K + S +    +     AI  +I+ +
Sbjct: 709 MAELKQLGIRFSLDDFGTGYSSLAYLKRLPLNQLKIDQSFVRDVLTDPNDAAIAETIVAL 768

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +   +IA+ +  +   + L  +GC   Q      PL      + L+
Sbjct: 769 GNILGLEVIAEGVETDAQWRFLANVGCKNYQGYLFGRPLPLLEFEQFLQ 817



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 52/148 (35%), Gaps = 5/148 (3%)

Query: 381 LIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++G   +   +      +  + +   + +  +    D++++ DI    +      + +L 
Sbjct: 115 IVGLASVATDITDRKRQELELIALKNKFAATLQALPDLMFELDIEGQFLDCHAQQSKLLV 174

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   M G   +    +  +    F   L   +          F++   +    + +   
Sbjct: 175 GSPSDMVGKTVH--EVLPPDVAAIFIQSLHEAMEQGISTGSQ-FQLDLPEGSRRFELSVA 231

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  S+ +     +I ++ DIT++K +  
Sbjct: 232 QKASDGDHQP-HFIVLSRDITDRKNAEH 258



 Score = 47.6 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++    +        +LG  +  + G   + L     ++        D  +     
Sbjct: 26  VFAKNLNGLYIYANEMAGIMLGRPAPEILGRKDSELF---ASELAGRMQTCDDKLLASGE 82

Query: 478 RLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               E  +            +  + + +  G I+    +A DIT++K+    ++  
Sbjct: 83  SASCEIWLPDRGHGGERCYWLVRKVLRDKKGQIVGLASVATDITDRKRQELELIAL 138


>gi|224826409|ref|ZP_03699511.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Lutiella nitroferrum 2002]
 gi|224601510|gb|EEG07691.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Lutiella nitroferrum 2002]
          Length = 1072

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 156/576 (27%), Positives = 271/576 (47%), Gaps = 13/576 (2%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMH 446
            V       Q I  +   +  A+  S + V   D        +   P    I G A  ++ 
Sbjct: 481  VEQDITAQQVIDLELRVRQRAIEASVNAVLITDNRRPDNPIIYVNPAFERITGYARATVI 540

Query: 447  GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            G    +L     +      T +   +  R        R    D    W  +R+ P+ +S 
Sbjct: 541  GRNCRFLQG--RDTAQPELTAIRRALENRHEGKAL-LRNYRKDGSMFWNELRVAPVRDSQ 597

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G++  YIG+ ND+TE K+  E +   A  D LTG+PNR    DRL   + ++    + R 
Sbjct: 598  GEVSHYIGVLNDVTEAKRYQEELERQANFDTLTGLPNRNLLQDRLGQGIAVA-RSKDERF 656

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             V ++D+D +K +ND LG  +GD +L+ + RRI   +     ++RL G+ F ++L     
Sbjct: 657  AVALLDLDNFKYVNDSLGHTLGDALLIEVARRIESSVPALATVSRLGGDDFVLLLPGVKT 716

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            + ++      +   +  P+ L   E+ ++ASIG   +     +  E+L NA+ AMY AK 
Sbjct: 717  AEQLDLALKNVTDQLNQPVELSGTELFLSASIGCCFYPDDGSSVDELLSNADTAMYQAKA 776

Query: 687  RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G + V  F   ++     RV ++  L  A+   EL + Y P + L  + + G EAL++W
Sbjct: 777  LGKSQVRCFALHMNDRVQRRVELEGALRRAIAQDELTMYYQPQLDLQSDRLCGFEALLRW 836

Query: 745  DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
               +   IS  EF+ IAEE  +I+ I+ +++  + R +  WR +   P   + INI++  
Sbjct: 837  RRGER-LISPLEFIPIAEETGLIREIDRYVIRAVFRQVEEWRAEGLDPG-EVAINISALS 894

Query: 805  LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            L +  +   + A ++     P  IKL  +ES++M N + ++ ++  L+ + +  ++DDFG
Sbjct: 895  LQEAGIVPYIAAEMASRRLPPDAIKLEVTESLLMKNVDTAQQVMSELKALHLKWSIDDFG 954

Query: 865  TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
            T  S LSYL   PFD +K + S +       +  ++ R+II MA+++   +IA+ +    
Sbjct: 955  TGYSALSYLRRYPFDQLKIDKSFIDDVNVNPENASMTRAIISMARSLRIAVIAEGVENRE 1014

Query: 923  DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             +  L   GCD IQ  + + PL   +    L  R P
Sbjct: 1015 QLGFLVEAGCDQIQGYYYSPPLTAEACRPWLIHRGP 1050



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 11/167 (6%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           +L   + +  +   L  +V      +   +         +          +      VW 
Sbjct: 330 QLAVALARARMFESLESLVAERTRALRSEMGERARAEAALRQSEALLHKVLETLPVGVWV 389

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL----PYIHINDRDNFRTILDSFVGYRR 476
            D     +    +   I G   G+   P R W       I  +DR+  RT     + +  
Sbjct: 390 TDEKGGILLHNSEGERIWGANPGT--EPQRRWYGPQGQQIATDDRELLRT-----IRHDG 442

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                  ++ + D     ++    P+++ +  +   I +  DIT Q+
Sbjct: 443 TVHNLVRQILSFDGAARTVLDAEVPLTDDDDQVRGGILVEQDITAQQ 489


>gi|24373074|ref|NP_717117.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24347254|gb|AAN54561.1|AE015596_1 sensory box protein [Shewanella oneidensis MR-1]
          Length = 998

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 151/556 (27%), Positives = 262/556 (47%), Gaps = 10/556 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           I    +  +L    S + +   D     +T       I G +   + G     + Y  +N
Sbjct: 442 IEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMM-YCDLN 500

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             + ++ + D      +G  Q E R R  +N+ + + + I  + + +G   R + + +DI
Sbjct: 501 GHEFYQQMNDDIRN--KGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDI 558

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T++K+S   I   A  D LTG+PNR+  L+ L+  +  +  + N    +M +D+D +K++
Sbjct: 559 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRN-HFALMFLDLDYFKEV 617

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A+GD +L+    R+   ++  D++ARL G+ F ++L S  +   I   A  + +
Sbjct: 618 NDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILR 677

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            IA P  L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 678 RIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 737

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R+ +  DL  AV N E  L Y PI+ +   E++  EAL++W HP+ G++S +EF
Sbjct: 738 QEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEF 797

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
           + +AE+  +I  I  ++ E+ AR    WR    +  I I +N +     D   L      
Sbjct: 798 IPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVE-IQISVNKSPIQFRDEGALLHNWLE 856

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +   + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 857 LLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 916

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S        E    +  +II MA  +   +IA+ +  E   + L R GCDY
Sbjct: 917 DIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDY 976

Query: 935 IQDSHVASPLGFNSIL 950
            Q    + P+  +   
Sbjct: 977 GQGYLFSKPVSASEFA 992



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+  +    V A     + + +  E+  L +  S   VWDWDI  D +      A ILG 
Sbjct: 297 LLVISGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGC 356

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R++  +    W++   +
Sbjct: 357 DIDMLNANSRQWMDSIVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGK 416

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 417 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 454



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 92/318 (28%), Gaps = 12/318 (3%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYIT 286
           V  Y +I      +   L    + +      +A+ S+  ++              V  + 
Sbjct: 11  VFLYDAIPKKHQRQYFLLWRLGIGVLIGGIGVAIMSTPWMYEPGIIFDTRSVLLCVSGLF 70

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           F G+     +   + Y   +      + +  I+      +I+   +    A +     I 
Sbjct: 71  FGGLPTAIAVVITALYRLSIGGVAMWVGVGVIITSGLIGVIWRHYRKAHLASISGTEVIS 130

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL------IGFTVIQHVLATGYFSQGI 400
                  + ++    L    + P L    + I+++      +   ++          Q  
Sbjct: 131 FAFLVHLVMLSWFFLLPGQHVVPVLSKITLPILLIYPLATWLLSRLLSRRFELERDEQIR 190

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             D              +    I +  +   P +  +L  +   +      W    H +D
Sbjct: 191 LQDDFLFRSQFNIGNIGIAITGIDQKWIKVNPRLCQMLKYSEDELLH--MTWKQLTHPDD 248

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            D      +  +       + + R  A +    +  + +     +N  +L  I    D+T
Sbjct: 249 LDADVAKFEQMLAGNIDNYELDKRFIAKNGSLVYTHMTVAC-KRTNHQVLLVISGYLDVT 307

Query: 521 EQKKSLEGILCNAFQDNL 538
            Q  +L      A ++ L
Sbjct: 308 AQ--TLADREVLASREQL 323


>gi|114320798|ref|YP_742481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227192|gb|ABI56991.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1052

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 143/558 (25%), Positives = 253/558 (45%), Gaps = 11/558 (1%)

Query: 403  DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDR 461
               + S  V      V   D         P    I G  +    G   R     +  +  
Sbjct: 495  ALRKLSAVVEQGPGAVMITDPQGVIEYVNPAFERITGYTAEEAVGQTPRIIQSGLMPSSW 554

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              +R +  +    R      EF  R    +  W    + P+ +  G I  YI I  D+TE
Sbjct: 555  --YREMWAAL--NRGEPWWGEFHNRRKTGELFWEAGVVFPLRDDQGGITHYIAIKQDVTE 610

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-SATDDNLRPTVMVIDIDKYKKIN 580
            +K +   +  +A  D +TG+PNR   +DRL T +   +         ++V+D+ +++KIN
Sbjct: 611  RKDAERRLEYHATHDTVTGLPNRALAMDRLETAVRRLAHRRGRGSGALLVLDLSQFRKIN 670

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            + LG A GD++L  +  R+   L   D L R  G+ F +IL     + +    A A+  +
Sbjct: 671  ESLGHASGDELLCRIAERLQGALGPHDTLCRPGGDEFLVILPELRTARQAEQVAKALLAT 730

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
            +  P+ L ++EI + A +G   +      SS +L+NA  A+  AK   RG         +
Sbjct: 731  LKAPLVLADQEIFMDARVGVTLFPEDGTDSSTLLRNAYAALSQAKQVARGDFRFFKPEAN 790

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  + ++  L  A+E   L+LV+ P++        G E L++W   + G +S  EF+
Sbjct: 791  ERAHRWLALEGRLRRALEQETLHLVFQPLVDARTLRPTGFETLLRWTLEEHGPVSPGEFI 850

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             +AEE  +I  +  ++L +  +    WR Q       + +N++   +  ++    ++  +
Sbjct: 851  PMAEETGLIIPMGEWVLRKACQQAARWRAQTGHC-YRMAVNVSPIQITGSDFVATVRTSL 909

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +T      ++L  +E +++G   R    L  LR +G+ L+LDDFGT  S LSYL  +PF
Sbjct: 910  RRTGLPAECLELEITERMLLGGQRRVLQSLQALRDLGVGLSLDDFGTGYSALSYLRQMPF 969

Query: 879  DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
              +K + S + G+    +   +L SII MA+ +   ++A+ +  E  +  L R GCD +Q
Sbjct: 970  SVLKIDRSFVQGAAAGPRGEQLLCSIIGMAQGLGLRVVAEGVETEAQVALLQREGCDLLQ 1029

Query: 937  DSHVASPLGFNSILKLLK 954
              H A P+   ++ +LL+
Sbjct: 1030 GYHFARPMAAEAVTRLLQ 1047



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 7/191 (3%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
            +     F      +G    V  +P  +L     +  ++    R                
Sbjct: 278 ALARGEAFGRALEYRGQGYLVAFVP--MLDARGEVVGYVVGYGRTGALGSLKHQFYAGAA 335

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             +L+       +L      +G   D  R         + ++ +D             T+
Sbjct: 336 FALLLVLGAGGVLLRFLAVQRGRLQDEARLRAISDTMNEGMYVFDGEGRITHVNRAAETL 395

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTI----LDSFVGYRRGRLQYEFRVRAADNQFH 493
           LG  +  + G   + L + H  +             + V   R +L  E   R  D    
Sbjct: 396 LGYRASELIGAHAHDLFHAHGPEGQYMPAAECPVYRAAVRGERLQLDSE-WFRRRDGSHV 454

Query: 494 WMIIRIRPMSN 504
            + I   P+ +
Sbjct: 455 PVQIFGAPIGD 465


>gi|114049083|ref|YP_739633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113890525|gb|ABI44576.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1466

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 269/571 (47%), Gaps = 12/571 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +    + A   + + V   D+  +          I+G    ++ G   +    
Sbjct: 903  LQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHNLVGQSFSQFVQ 962

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +    +D     +   +  +      E  +   +     + + +  M +++   L Y+ +
Sbjct: 963  M----KDGLSAEVHQLL-GQDSSWTGERELVGQNGVICPVWLNVSVMQSASDSSLHYVIV 1017

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   + ++      +  ++ +D+D+
Sbjct: 1018 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQMAQQSGE-KLALLFLDLDR 1076

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + NN  +I   A 
Sbjct: 1077 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAE 1136

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + +
Sbjct: 1137 RLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYY 1196

Query: 696  --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                ++     + ++ DL  A+E  E  L Y P I +   ++ +G+EALI+W HPK G I
Sbjct: 1197 SSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYI 1256

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                F+ +AE   ++  I+ ++  R   D   W  +       + +NI++      +  +
Sbjct: 1257 RPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCA-TQFKLSVNISAVHFRQPDFID 1315

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G++ +++ T    S + L  +E V+M   + ++  L +L+++GI + +DDFGT  S L+Y
Sbjct: 1316 GIKKILADTQMPASSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAY 1375

Query: 873  LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L +   +T+K + S +          AI+ SII +A+N++ T++A+ +     ++++   
Sbjct: 1376 LRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSR 1435

Query: 931  GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            GC  +Q  + A P+      + L ++  L  
Sbjct: 1436 GCYIVQGYYFAKPMSVTDFERYLLQKSTLSS 1466



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + V      +Q +    +R   ++ GS   +W+W         
Sbjct: 754 LLLVFSIIALSLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYL 813

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                ++LG  +  +   +      +H  DR       +S +     R + E+R +    
Sbjct: 814 DNR-GSVLGSHANEIVATLETLP--VHPEDRGKALAQWNSMLAGEIDRFEAEYRYQRRSG 870

Query: 491 QFHWMIIRIRPM-SNSNGDIL-RYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP+  N    ++ R  GI +DIT Q++  + I   A
Sbjct: 871 NWGWLRVRGRPVARNKQTQVIERVAGIYSDITLQRQLEDEINLLA 915


>gi|257062144|ref|YP_003140032.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592310|gb|ACV03197.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 726

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/644 (22%), Positives = 288/644 (44%), Gaps = 10/644 (1%)

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                    +      G +   +L+   +        +   +T  +  D +       + 
Sbjct: 74  LPGFNGLQALKMLQEAGQKIPFILVTGSLGEEAAVECMKAGVTDYIVKDRLFQLPTILMR 133

Query: 377 LIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            +         Q V+     ++  + +  +R    +  + DI+            +P + 
Sbjct: 134 SLEEFALRREQQRVMEERRQAEIALRASEKRFRALIENASDIILIVAPDSQLTYASPSVE 193

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHW 494
            +LG  + S+ G    +   IH +++       D         +L  +FRVR   + +  
Sbjct: 194 RVLGYDASSLTGQ--RFFDLIHPDEQGEIIGFFDKIKETSNLSQLLPDFRVRTQKDTWVI 251

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +    + +   +  +  ++   +DITE+ ++ E +  +A  D LTG+ NR + L +L   
Sbjct: 252 LEAIAKNLQ-EDPAVGGFVVNCHDITERHQTAEQLRYDASHDKLTGLANRSALLKQLKRA 310

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++           ++ +D+D++K IND LG  +GD +L  + +R+    +  D+LAR  G
Sbjct: 311 IEQKKRRKEDHFALLFLDLDRFKVINDGLGHLMGDQLLKEMAKRLQRCHREGDLLARFGG 370

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F   L       +    A  + +++  P  L  +E+ ++ASIG         +  +ML
Sbjct: 371 DEFVFFLKEIRQQEQAIVVAERIHQALREPFILNHQEVFISASIGITLSADHYDSPEQML 430

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+ AMY AK RG      F  +       ++ ++ DL  A++  EL + Y PI  L  
Sbjct: 431 RDADTAMYWAKARGQGGHTIFAPTMHLSALKQLHLESDLRQAIQRQELVVYYQPIFSLDT 490

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           ++IVG EAL++W  P+   I  ++F+ +AEE  +I  I+ ++L+   + +  W+ +    
Sbjct: 491 QKIVGAEALVRWQPPEKPLIPPNDFIPLAEETGLILEIDHWVLKSACQQLYQWQQEFKTL 550

Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P FI +N++ K      L E +   I +T  +   +K+  +E+V + N      +L +L
Sbjct: 551 APQFISVNLSPKQFSQPNLTEKIAQTIKETGLAEQCLKIEITETVFLENSTSVLEILCQL 610

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909
           +++ I + LDDFGT  S LSYL   P +++K + + ++   +  K   I+R +  +A  +
Sbjct: 611 QQLNIQICLDDFGTGYSSLSYLHQFPLNSLKLDRTFVSRLGKTNKNDTIVRIVATLANEL 670

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +IA+ I     I+ L  +G  + Q    + P+  NS ++ L
Sbjct: 671 DLELIAEGIEEIEQIQLLHYLGYQWGQGYCFSPPVDSNSFIEFL 714


>gi|207739719|ref|YP_002258112.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206593101|emb|CAQ60007.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 636

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 152/567 (26%), Positives = 263/567 (46%), Gaps = 23/567 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    + +   D  R      P  A +LG++  ++ G          I++ D     +D
Sbjct: 57  MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 116

Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513
                 +   R +L   F +R  D +  W+     P+    G+                +
Sbjct: 117 WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQPYAVL 176

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D+
Sbjct: 177 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLDL 235

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG   GD +L  +  R+    +  D +ARL G+ F ++L S  + +     
Sbjct: 236 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRRV 294

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P ++  +E+ V  SIG A         + +L+ A+ AMY AK RG N+ +
Sbjct: 295 AERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 354

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W+   +G 
Sbjct: 355 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFGR 414

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L 
Sbjct: 415 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 473

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++ +      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S LS
Sbjct: 474 GMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 533

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L  
Sbjct: 534 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLRE 593

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCD  Q   +  PL   ++  L++E 
Sbjct: 594 IGCDEYQGYLLTRPLEPAAMHDLVREH 620


>gi|325983415|ref|YP_004295817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas sp. AL212]
 gi|325532934|gb|ADZ27655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nitrosomonas sp. AL212]
          Length = 753

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 152/592 (25%), Positives = 266/592 (44%), Gaps = 17/592 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
             L       ++ IG  +I   L     ++ ++   +        S + +   D  +  +
Sbjct: 169 HRLPSAFHRKLLKIGSFIIGIALEQQKINEQLYLSSK----VFENSTEAIMIADANKIII 224

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +T   +  I G  +  + G   + +  I H      F   +   V    G  Q E   R 
Sbjct: 225 STNKALHIITGFTAEEVIGKPTSIVTSIRHS---TKFFQKIWLSVKQ-SGHWQGEVWNRH 280

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
              + +   + I  + +  G I  Y+   ++IT++KKS E I   A  D+LTG+PNR  F
Sbjct: 281 KYGREYPAWLNISSVLSKKGSICYYLINFSNITDKKKSDEIIWRQANYDSLTGLPNRNMF 340

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            DRL+  +  +A    +   V+ ID+D++K++ND  G +VGD +LV   +R+   ++  D
Sbjct: 341 YDRLSHDIKNAART-GMLLAVLFIDLDRFKEVNDSFGHSVGDALLVEAAKRLNGCVRETD 399

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL G+ F IIL   N+          +   +  P +L  +   VTASIG   + +  
Sbjct: 400 TVARLGGDEFTIILNGINDQHCAERIIQMILLELTKPFHLNAKLAYVTASIGVTFFPADA 459

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYH 725
            ++  ++KNA+ AMY AK+ G N    F  +  +    R  I  +L  A+   +L+L+Y 
Sbjct: 460 GSAEILMKNADQAMYAAKNNGRNCCSYFTSNMRKATETRSRIAYELRHALREQQLFLMYQ 519

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI++L    I   EAL++W HP+ G +S  EF+ IAEE  +I  I  ++ ++    + +W
Sbjct: 520 PIVKLATGSIHKAEALVRWQHPERGTVSPVEFISIAEESNLISEIGDWVFKQAVNQVAAW 579

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           +         I IN + K  +           + +       I +  +E++++   E   
Sbjct: 580 QANY-NTNFQISINKSPKQFISK--MSDWVNHLHEQKLDGHSIIVEITENLLLDVHELVV 636

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
             L   R  G+ + +DDFGT  S LSYL     D +K + S ++          +  ++I
Sbjct: 637 KQLLNFRDAGVQVAIDDFGTGYSSLSYLKKFDIDYLKIDQSFISNLDSRSNDRILCEAVI 696

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            MA  +   +IA+ +  +   + L  MGCDY Q    + PL   +    L++
Sbjct: 697 TMAHRLGMKVIAEGVETDSQKQLLIAMGCDYGQGYFFSKPLTTENFEVFLQQ 748


>gi|148548982|ref|YP_001269084.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida F1]
 gi|148513040|gb|ABQ79900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida F1]
          Length = 1098

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/583 (24%), Positives = 265/583 (45%), Gaps = 18/583 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLA 441
              T ++ +         + S  E+ + A   S D +   +    R +        + G +
Sbjct: 515  SVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEINDGFCRLTGYS 574

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +  + G     +  I  +D+    + L + +  R      E   R        + + + P
Sbjct: 575  TADVIGHTVYEI-GIWADDKQR--SALLAELHERGRVHHREMLGRNKRGDILTVEVSVEP 631

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++    ++   +  A D+++ K +   I   A+ D LT +PNR   +DRL+  + L    
Sbjct: 632  ITL--NEVDCLLLTARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRH 689

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             NLR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 690  -NLRGALLFLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLL 748

Query: 622  ISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                        K+ + A  +R+ +A P++L  + + VT SIG A       T +++LK 
Sbjct: 749  SGLEGSREHVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKR 808

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N  + F  +     S+R+ ++ DL LA+   EL L + P +   D  
Sbjct: 809  ADIALYRAKDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNR 868

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            IVG E L++W HP  G    S+F+ + EE  +I  +  ++L+                  
Sbjct: 869  IVGAEVLLRWHHPLLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDAD 928

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    N+    +   +         + L  +E +V+ N E +   +  L+
Sbjct: 929  DFSLCVNISPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMRELK 988

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + G+S  +DDFGT  S L+YL  +P D +K + S +  +        I+R+I+ MA++++
Sbjct: 989  RYGVSFAMDDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLD 1048

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +IA+ +     +  L R+GC   Q    + PL      ++L
Sbjct: 1049 LAVIAEGVELTEQLAFLERLGCHLYQGYLHSRPLPLLEFRQML 1091



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 55/157 (35%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G+ L  +    +            Q +    ER  LA+  +    WDW I    +  +
Sbjct: 250 TQGIELEGVTFLISTFVDTTERKRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGS 309

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              A + GL     H     +   +   +R++ R    S      G  Q  +RV+  +  
Sbjct: 310 ARAAQLHGLPPIPFHESFDAFFEGVPEQERNSMRQAYRSLREGPAGNYQITYRVQLENGT 369

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             ++  R R   +  G  LR  G   DIT+Q +  + 
Sbjct: 370 SRYIESRARLYRDDQGIPLRMAGTLLDITDQVEREQR 406



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+  + +  +   A+ G+    W WDI   RV+ +     + G           ++L  +
Sbjct: 22  SEQAWQNAPQLLAALNGARLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLL 81

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR   R +  + V           R+R  D   HW+ I      + +G     IG+ 
Sbjct: 82  PEEDRARTRQVFQAVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGRPQ-MIGVI 140

Query: 517 NDITEQKK 524
            +IT Q++
Sbjct: 141 REITRQRE 148



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 15/166 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
              +  +       Q + +  E+ +     S D +        + +   P      G +S
Sbjct: 391 AGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWSS 450

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     +  +     +  + I           +     +   +      +I  R +
Sbjct: 451 EQVLGRTAEEI-GLWAESVERAKRIEQVIREQALSNVAVV--LNHRNGAPMTCVISSRLI 507

Query: 503 SNSNGDILRYIGIANDITEQKKSL------EGILCNAFQ---DNLT 539
           +  +      +    DIT+Q+++       E     AF    D +T
Sbjct: 508 TVDDQPCS--VTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAIT 551


>gi|229170057|ref|ZP_04297748.1| Sensory box protein [Bacillus cereus AH621]
 gi|228613404|gb|EEK70538.1| Sensory box protein [Bacillus cereus AH621]
          Length = 735

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 165/734 (22%), Positives = 317/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   + +   T   +     LF ++      +
Sbjct: 6   TWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGMETSS 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGLW- 355
                I  ASI+L     I+Y   K            ++    ++P + +I  +   ++ 
Sbjct: 66  EVSYLIHTASILLIGLSSILYILDKPIQHKTKTKYYRFDYVRFILPYFSIIITFSFIVFQ 125

Query: 356 -----MAITKRLDNDIIQPALVGGL----VLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  +   + + I+       +      ++        Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        +   +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVTSYSLQHFIDPQDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++ + I   P+   N +++   GIA DIT   +  
Sbjct: 244 SLQITKEGRPQTL--EIRTKEKEGYYYHLHITFIPIF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L TIL+ +    N    VM +D+D++KKIND LG  
Sbjct: 301 KQVEHMAFHDALTGLPNRRKFEKDLKTILNTAQNTTN-DVAVMFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    +  A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSASFMAEQILTILNKPYL 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           + + E++VT SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IKDEELSVTPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 HFLEGELSKALQQNEFFLEYQPQVNTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +         L  L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNHSVIAKLEELQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E   K L    CD+IQ    + 
Sbjct: 659 REFICGITNSPLEEAIIASIIKLSKELNLEVIAEGVETEEQWKFLHEQNCDHIQGFLFSK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|328471642|gb|EGF42519.1| hypothetical protein VP10329_00765 [Vibrio parahaemolyticus 10329]
          Length = 811

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/552 (25%), Positives = 261/552 (47%), Gaps = 17/552 (3%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +      + I G ++  + G   N L   H +D  
Sbjct: 267 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   +++           + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 438

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F I+L   +    + +   ++     
Sbjct: 439 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 498

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + ++ SIG A + +    S  +LKNA+ AMY AK  G N    +      
Sbjct: 499 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 558

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L+LVY P   L    I+G+EAL++W+HP++G +  ++F+ 
Sbjct: 559 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 618

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I++I  ++L+        W  +       I +N+++  L  +     ++ ++ 
Sbjct: 619 IAEKTGLIQSIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 677

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R++L  +ES ++ +P+ +   L +L ++GI ++LDDFGT  S LSYL  +P +
Sbjct: 678 ETGFPAHRLELEITESFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 737

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   +     AI+ +II M   +   ++A+ I     +  L   GC Y Q 
Sbjct: 738 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 797

Query: 938 SHVASPLGFNSI 949
              + P+    +
Sbjct: 798 YLFSPPVAAEKL 809



 Score = 45.3 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 421 WDIVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W    D +       +      ++  + G              + F       V      
Sbjct: 160 WIKTTDGLYAMTNRSVEQAWKKSNDDIVGKND--FDLFSAERAEKFIDADRLVVATGTQN 217

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  E R    +N   W+     P+ N  GD++  +G+  +IT ++K +E  L  A
Sbjct: 218 IVEECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 271


>gi|89901264|ref|YP_523735.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89346001|gb|ABD70204.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 735

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 150/580 (25%), Positives = 280/580 (48%), Gaps = 21/580 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              + +  + S   +    V  S DI++  D           +  +LG +   + G   +
Sbjct: 158 ENRHIAWQLESSERKYRYLVDSSPDIIYTLDHEGRFTFVNDRVQQLLGFSREELIG--EH 215

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMS------ 503
           +   I  +D      + +   G  R     E R+  R A  +       +  +S      
Sbjct: 216 YSVLIQEDDVLRANYVFNEGRGDYRLSRNVELRLKSRHAKGEVRTFTHELMTISFNASDT 275

Query: 504 -----NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                ++  ++    G+A DIT++K++ E I   A+ D LT +PNR  F DRL   +  +
Sbjct: 276 SQEPDSTQQELFGTYGVARDITDRKRADELITYQAYHDILTDLPNRVLFKDRLGLAVLQA 335

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +D     +M ID+D++K +ND LG  +GD +L     R+   L+  D LARL G+ F 
Sbjct: 336 KRND-ASLALMFIDLDRFKLVNDTLGHVIGDKLLQQAAIRLKACLRSGDTLARLGGDEFT 394

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +L   ++       A    + +  P  L  + + ++ASIG A +     ++ E+++N++
Sbjct: 395 AVLPELSDRQDAVLIAEKFLECLRQPFQLAGQSVHISASIGIAIYPGDGESTDELIRNSD 454

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMYH K  G N    F  S       ++ ++  L LA+E  EL + Y P + +  ++IV
Sbjct: 455 IAMYHMKAEGKNGHSFFDRSMLDASCQKIELEHSLRLALERGELEMYYQPQVDVRTQKIV 514

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W+HP+ G + + +F+  AEE  +I  I  +MLE I  D++ W       P+ +
Sbjct: 515 GAEALMRWNHPERGFLGAGDFLPFAEENGLIIPITDWMLEAICLDLLDWNAAGG-EPVRL 573

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ + L   +  + ++  ++    + S+I++  +E++ + NP+ +   L +L ++G+
Sbjct: 574 SLNLSPQYLDRGDFFDKLKNALTLHHINASQIEVEVTENICIHNPQTAIEQLNKLCQLGV 633

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914
           S+ +DDFGT  S LSYL   P  T+K + S +           ++ +II +AK +   ++
Sbjct: 634 SVAIDDFGTGYSSLSYLHRFPIHTIKIDRSFVMKIQNDNSQCPVVLAIISIAKGLSLNLV 693

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  ++  + L R GC+ +Q      PL    +L LL+
Sbjct: 694 AEGVETQVQERYLERSGCNTMQGYLYHKPLSQKKMLALLR 733


>gi|146292356|ref|YP_001182780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145564046|gb|ABP74981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1018

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 149/557 (26%), Positives = 258/557 (46%), Gaps = 10/557 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + I G  +  + G     L Y  IN
Sbjct: 451  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSDITGYKAKEVCGQHIRLL-YCDIN 509

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + ++    ++G+ Q E   R  + + + + + I  + +  G   R + + +DI
Sbjct: 510  GRDFYDKMNNAI--NQKGQWQGEMLQRRKNGEEYVIWLTINTIKDKEGMPYRRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L   +  +  + +    ++ +D+D +K++
Sbjct: 568  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQD-HFALLFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG  +GD +L+    R+   ++  D++ARL G+ F ++L +  +   I   A  + +
Sbjct: 627  NDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSTMADHKGIERVAEHILR 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    +TASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RIAEPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + GN+S  EF
Sbjct: 747  QEYAKYRMRLIQDLRQAVSNKEFELHYQPIVSLTTGEVAKAEALIRWTHAERGNVSPGEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WRD+     I I +N +     D   L      
Sbjct: 807  ISVAEDTGLIVEIGNWVFEQAARQSAAWRDELG-VDIQISVNKSPIQFRDEGALLHNWLE 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 926  DIDYLKIDQSFTRHIDTDTNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLVSAGCDY 985

Query: 935  IQDSHVASPLGFNSILK 951
             Q    + P+      +
Sbjct: 986  GQGYLFSKPIAAIDFAQ 1002



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+       V A     + + +  E+  L +  S   VWDWDI  DR+      A ILG 
Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDRIERNARSADILGC 365

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R+   + Q  W++   +
Sbjct: 366 DIDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETPQHKMEYRLNTLNRQVRWILDTGK 425

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 78/263 (29%), Gaps = 14/263 (5%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           I+      +  L  ++       +         + +  +  +I    + Y ++ L   + 
Sbjct: 75  ISGLFFGGLPTLIAVALTGFYRLSIGGDAMWIGVAVIVSSGLIGVIWRQYRKSYLANISA 134

Query: 345 --ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGY 395
             +L F + + + M +        +   L+  L L V+        +   ++        
Sbjct: 135 KEMLCFAYTVHIVMLLWFFTLPLPVALPLLAKLSLPVLTVYPLATWLLSRLLSRRFELER 194

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q    D              +    I +  +   P +  +L      +      W   
Sbjct: 195 DEQIRLQDDFLFRSQFTVGNIGIAITGIDQKWMKVNPHLCQMLKYTENELLN--MTWKQL 252

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H +D +      +  +  +    + + R  A D    +  + +     +N  +L  I  
Sbjct: 253 THPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDGSIVYTHMTVAC-KRANNRVLLVIAG 311

Query: 516 ANDITEQKKSLEGILCNAFQDNL 538
             D+T Q  +L      A ++ L
Sbjct: 312 YLDVTAQ--TLADREVLASREQL 332


>gi|71909657|ref|YP_287244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71849278|gb|AAZ48774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 739

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 137/572 (23%), Positives = 254/572 (44%), Gaps = 16/572 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +  D    ++A   S   +   D+ +  +        + G ++    G     L   
Sbjct: 159 RRRMEHDLRIAAIAFE-SQAAIMVTDVNQRILRVNQAFTKLTGYSAEEAIGQTPGMLKS- 216

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D D +  +  S    + G  Q E   R  + +     + I  + +  G +  Y+   
Sbjct: 217 GRQDADFYAAMWCSL--GQCGHWQGEIWNRRKNGEIFPEWLTISGVRDGRGKVTHYVSTF 274

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DI+  K +   I   AF D LT +PNR+  L+RL      +         +++IDID +
Sbjct: 275 SDISNLKVAESEIHHLAFYDPLTAMPNRRLLLNRLDQACVSAKRSGQF-GALLIIDIDHF 333

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IA 631
           K +ND LG  VGD +LV + RR+   ++  D  AR  G+ F ++L    +  +       
Sbjct: 334 KTLNDTLGHDVGDHLLVEVARRLSACIREGDTAARQGGDEFVVMLEELGSEQEGAAVQAE 393

Query: 632 DFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A  +R  +A P  L    E   +ASIG + +   + T   +LK A++A+Y AK  G N
Sbjct: 394 IVAEKIRLELARPYLLNGDTEYFRSASIGISLFFGQEKTIDILLKQADIALYKAKDAGRN 453

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F  +      +R  ++  L  A+   E  L   P +      ++G EAL++W  P 
Sbjct: 454 AIRFFDTAMQTTLDERAELEAGLRRALVRDEFVLYVQPQVD-AVRRLIGAEALLRWQPPG 512

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              ++ ++F+ +AEE  +I  I +++L++   ++  W D      +F+ +N++++     
Sbjct: 513 RAMVAPNDFIPLAEETGLIVPIGIWVLDQACAELRRWADDPRSASLFLSVNVSARQFRQA 572

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +   +++   +P  +KL  +ES+++ N E     +  LR IG+  +LDDFGT  +
Sbjct: 573 DFVAQVADALARHGANPRLLKLELTESLLLDNVEEVIEKMQALRTIGVRFSLDDFGTGYA 632

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   PF+ +K + S +          AI+R+II M   +  +++A+ +  ++    
Sbjct: 633 SLSYLKRFPFEQLKVDRSFIRDININPDDAAIVRAIIAMGNTLRLSVVAEGVEDDLQHAY 692

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           L +  C   Q      P+ F+     L    P
Sbjct: 693 LVKHECSLFQGYLFGRPMSFDDFRASLGSEPP 724



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 84/318 (26%), Gaps = 70/318 (22%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               +G  +   +              +LG     + G     L   H+ D  +    L 
Sbjct: 34  IFEHAGRAIILTNPDGLISYFNRAAQQMLGYTPEEVVGRETPLL--FHLADEISACARLY 91

Query: 470 SFVGYRRG---------------RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           S                      R + ++     D     + + +  + ++ G +  Y+G
Sbjct: 92  SCEPDGTPPAGFGVFISRLKLKIRDEADWTYVRKDGSHLPVSLAVSVLRDAKGGVQGYLG 151

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA+DI+E++                          R+   L ++A     +  +MV D++
Sbjct: 152 IASDISERR--------------------------RMEHDLRIAAIAFESQAAIMVTDVN 185

Query: 575 -KYKKINDVL---------------------GIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +  ++N                        G    D                 +I  R 
Sbjct: 186 QRILRVNQAFTKLTGYSAEEAIGQTPGMLKSGRQDADFYAAMWCSLGQCGHWQGEIWNRR 245

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
                  I         + D    +   ++   ++   ++  +     A +       + 
Sbjct: 246 KNGE---IFPEWLTISGVRDGRGKVTHYVSTFSDISNLKVAESEIHHLAFYDPLTAMPNR 302

Query: 673 --MLKNAELAMYHAKHRG 688
             +L   + A   AK  G
Sbjct: 303 RLLLNRLDQACVSAKRSG 320


>gi|77458934|ref|YP_348440.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382937|gb|ABA74450.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pseudomonas fluorescens Pf0-1]
          Length = 873

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/613 (23%), Positives = 279/613 (45%), Gaps = 20/613 (3%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-LATGYFSQGIFSDGER 406
            +  +G  + +   L     + AL        +   F  +Q    A    ++ + +  ER
Sbjct: 259 LLPTLGPALLVLMALTVWFFRHALRSS---RYVDDSFEAMQASNQALLASNRALEASEER 315

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  + D +W+ D        +   + + G       G     L        D +  
Sbjct: 316 FRAVAEAASDWIWEVDEALSITYLSTRFSAVTGYPQAQWIGKHIGHLLVCDTTPLDLWLK 375

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            LD         L+  +R    + Q     +  RP+  S   ++ Y G A+DIT++  + 
Sbjct: 376 KLDE--ESNASDLRCTYR--DREGQQRHCRLSARPIVEST-AVVGYRGTASDITDEVAAH 430

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             I   +  D LTG+PNR      L   L L         +V++ID+D +K IND LG  
Sbjct: 431 AQIQHLSLHDALTGLPNRNKLSRYLDDALLLKEHAP--PLSVLMIDLDNFKPINDSLGHP 488

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +  R+ E  +  DI+ARL G+ F ++L   +   +I  F   +  S+  PI 
Sbjct: 489 AGDAVLQEVAGRLRECTRDHDIVARLGGDEFVVVLCGMDTHQEIDRFCTRLIGSLHQPIL 548

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDR 704
             ++ + + AS+G A        +SE+++ A++A+Y AK  G N    F   +S     R
Sbjct: 549 FEQQPLHIGASVGIALSRRHGYVASELIRCADIALYQAKSEGKNTWCYFEAHMSDQIQTR 608

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +++DL  A+ N+E  L + P  ++  +EIV +EAL++W HP  G +    F+ +AE+ 
Sbjct: 609 RQMEDDLRRALTNNEFVLHFQPRYKVDGKEIVSVEALVRWQHPVKGLLGPDLFIPLAEQT 668

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L       ++W        I + +N++      +++ E ++ ++  T + 
Sbjct: 669 DLIVPLGRWVLREACETALTWPA-----DILLSVNLSPAQFAISDVVEDVREVLVGTRFP 723

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            SR++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD +K +
Sbjct: 724 ASRLELEITENVMLNDTDGALTTMTALKELGVRLNMDDFGTGYSSLGYLRAYPFDGIKID 783

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +   +      A++++II + K +  T+ A+ +  E  +  L +  C+ +Q  +++ 
Sbjct: 784 KRFIASISTGANDRAVVQAIIGLGKAMGLTVTAEGVETEEQLDILGKDQCNEVQGYYMSR 843

Query: 943 PLGFNSILKLLKE 955
           P+   +   LL+ 
Sbjct: 844 PIDRAAFASLLQA 856


>gi|292492175|ref|YP_003527614.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580770|gb|ADE15227.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 845

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 127/569 (22%), Positives = 261/569 (45%), Gaps = 9/569 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R S+ +  S D V   D              + G+ +    G           
Sbjct: 276 RVEQRQQRLSVILEASTDFVGFSDNEGIAQYVNQAGCRLAGMTAEEAVGQPITVFT---P 332

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  +            R+G  + E  +   + +   +   I     S G++  +  +A D
Sbjct: 333 DWANIIIQNEGLPAAKRQGWWRGETALLHREGREIPVSQLILAHRTSEGEVEFFSTVARD 392

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+E K     +   A  D+LTG+PNR    DRL   +  +         V+ +D+D++K 
Sbjct: 393 ISEHKAYESQLEYQANYDSLTGLPNRNLLQDRLEHAIAHARRIRQG-VAVLFLDLDRFKM 451

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD +L ++  R+   ++  D ++RL G+ F ++L            A  + 
Sbjct: 452 VNDSLGHDVGDALLKAVAERLRGCVRDEDTVSRLGGDEFVLVLEELRGGEMSRLIANKIL 511

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  P  L  +   + AS+G + ++     +  +LK+A+ A++ AK +G   + S+   
Sbjct: 512 AALQAPFALEGQTFRINASVGISLFSRDGKDALTLLKSADTALHWAKAQGRGCIRSYTSE 571

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ +++ L  A+E  E  L Y PI+ L    +V +EAL++W HP+ G +  ++
Sbjct: 572 MNAQVVERLTMEQSLRQALEREEFVLQYQPIMDLQTGSMVAVEALLRWQHPQLGVVPPAK 631

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEEL ++  +  ++L         W+D    P + + +N++++  +  +L + +  
Sbjct: 632 FIPLAEELGIMPTVGEWVLRTACLQARRWQDAGL-PMLTMSVNLSTQQFIQVDLTDRVAH 690

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   PS + +  +ES +M + E +   L   +++ + L++DDFGT  S L +L   
Sbjct: 691 ILDETGLPPSCLAIEITESQIMQDVESAIASLRAFKEMKVHLSIDDFGTGYSSLIHLKRF 750

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K     +     T +   I+ ++I +A ++   ++A+ +  E  ++ L   GC+ 
Sbjct: 751 PLNRLKIGKDFIHDFTKTPEDETIVLAVISLAHSLGLKVVAEGVETEEQLRFLWENGCEE 810

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +Q  + + PL  + +  LL+E   L   +
Sbjct: 811 MQGHYFSRPLPASEMEVLLQENRQLPLRS 839



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 95/287 (33%), Gaps = 11/287 (3%)

Query: 253 WRACSEIALSSSLIIFLFMYL----HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
           +         +  ++ +F YL       R     G+ T      + +   +        A
Sbjct: 4   FIDLGSEIFRTGFLLAIFGYLLWVGRTRRSLPPRGWNTLLSGFGLLVFGSLLDITDEFEA 63

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
                 + +  +      +     GY   +L +  W+            +  R   +   
Sbjct: 64  LNPFFIVGNTHIQALLEKVVIFPLGYLLLLLGLMRWMPAVHGL---SREVESRKQVERAL 120

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            A V      +      + + V       + +     R    +  S  +++   +  + V
Sbjct: 121 EATVETRTGELKAANLALAEEVAVRRQAQEFLEITRARLEHLLTASPAVIYCCKVGGNYV 180

Query: 429 --TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
               + ++  ++G            W+ ++H  D++     L + +   RG+  YE+R R
Sbjct: 181 NTFVSENVQALVGYKPKDFIEDSCFWINHVHPRDQERVAADLGALLQ--RGKACYEYRFR 238

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             D  + W+   ++ + +++G  L  +G   DIT++K+  +     +
Sbjct: 239 HQDGSYLWIHDELQLVRDADGQPLEIVGYWVDITDRKRVEQRQQRLS 285


>gi|46579825|ref|YP_010633.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449240|gb|AAS95892.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234168|gb|ADP87022.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris RCH1]
          Length = 997

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 148/566 (26%), Positives = 272/566 (48%), Gaps = 8/566 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q +    +R       + + ++        +   P +A + G +       + +
Sbjct: 417 ERRSVEQALRRAEQRYRGIFENAVEGIFQIAPDGMLLRGNPAMAEMFGYSDIESLREVGS 476

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +          +    +        +EFR R  +++  W+ +  R +++++   L 
Sbjct: 477 MAEAMFAE--ATSSDVFFHQLEMTGNVSGFEFRARHREDRELWLRVNARRVADAHDATLF 534

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G   DIT   +S + +   A+ D LTG+PNR  FLD L   +  +A   +   TV+ +
Sbjct: 535 YEGFLTDITISHRSRQQLAHQAYHDPLTGLPNRLLFLDHLQLAMQRAARRTDAMFTVLYL 594

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  +GD +L  +   +   ++  D +AR  G+ F I+L    N     
Sbjct: 595 DLDRFKIINDSLGHGIGDALLREVACTLRRCVRDVDTVARFGGDEFAILLEDTGNCAGAV 654

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +R+S+A P+N+   E+  TASIG    T   +T  ++L++A+ AMY AK  G + 
Sbjct: 655 RIARRIRESLAQPVNIAGHEVFTTASIGIVLQTRDYLTPEDILRDADTAMYRAKEMGKSR 714

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + F           + ++ DL  AVE  EL L YHPI+ L D  + G E+L++W     
Sbjct: 715 FKVFNARMREDTLRLMALETDLRFAVERGELSLRYHPIVDLEDGSLHGFESLLRWRRGN- 773

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            ++S +EF+ +AE+  +I  I  F++E + R + +W+D A    I + +NI+ + L+   
Sbjct: 774 EDVSPAEFIPVAEDAGLIADIGAFVIEDVCRQVAAWQDTACDCGI-VHVNISGRQLMRPG 832

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +  ++ +   + S ++   +ESV++ +   +  ++ +LR++GI L LDDFGT  S 
Sbjct: 833 FAQMVDEILRRHGIAGSCLRFEVTESVLVRHGTLAVSVMHQLRELGIRLCLDDFGTGYSS 892

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P +++K + S + G    E   A++R I+ +  ++   ++A+ +  E     L
Sbjct: 893 LGYLRRLPVESLKIDRSFVWGMEKDEAGRALVRGILTLGLHLGLEVVAEGVETEEQAVLL 952

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGC Y Q    A PL    +   +
Sbjct: 953 RDMGCRYGQGFLYAKPLLSERVPPFV 978



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 27/204 (13%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL-------GSGDIVWDWDIVRDRVTT 430
           +  ++GF         G     +         A+        G G+ +         + +
Sbjct: 227 LARVMGFMAADLARFVGGLEAEVKRSTGELRTALGELSAIVGGMGEGLLVVSAEGLVLRS 286

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRA 487
               A++  L        +   LP    +D   R      L S       R   E+    
Sbjct: 287 NEAFASLFCLEPFGCPVALDALLPLSGQDDSGLRGVLEDALQSMARGEAARHSGEYPFIC 346

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D    W+   I P++   G     + +  D+T + ++       A +D           
Sbjct: 347 GDGVRRWVGCTIEPVT-IGGKPC-IVCLVQDVTARNEAQ-----QALRDA---------- 389

Query: 548 LDRLTTILDLSATDDNLRPTVMVI 571
            D+L   +     D       +++
Sbjct: 390 YDKLEAEVASRTRDLRRANAQLLL 413


>gi|113968775|ref|YP_732568.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113883459|gb|ABI37511.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1494

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 269/571 (47%), Gaps = 12/571 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +    + A   + + V   D+  +          I+G    ++ G   +    
Sbjct: 931  LQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHAAQQIIGSEQHNLVGQSFSQFVQ 990

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +    +D     +   +  +      E  +   +     + + +  M +++   L Y+ +
Sbjct: 991  M----KDGLSAEVHQLL-GQDSSWTGERELVGQNGVICPVWLNVSVMQSASDSSLHYVIV 1045

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   + ++      +  ++ +D+D+
Sbjct: 1046 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRLLQSIQMAQQSGE-KLALLFLDLDR 1104

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + NN  +I   A 
Sbjct: 1105 FKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAE 1164

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   I  P  L  RE  ++ SIG + W    +     +KNA+LAMYHAK  G  + + +
Sbjct: 1165 RLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFKYY 1224

Query: 696  --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                ++     + ++ DL  A+E  E  L Y P I +   ++ +G+EALI+W HPK G I
Sbjct: 1225 SSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYI 1284

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                F+ +AE   ++  I+ ++  R   D   W  +       + +NI++      +  +
Sbjct: 1285 RPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRCA-TQFKLSVNISAVHFRQPDFID 1343

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G++ +++ T    S + L  +E V+M   + ++  L +L+++GI + +DDFGT  S L+Y
Sbjct: 1344 GIKKILADTQMPASSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAY 1403

Query: 873  LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L +   +T+K + S +          AI+ SII +A+N++ T++A+ +     ++++   
Sbjct: 1404 LRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSR 1463

Query: 931  GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            GC  +Q  + A P+      + L ++  L  
Sbjct: 1464 GCYIVQGYYFAKPMSVTDFERYLLQKCTLSS 1494



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+    +I + + +   + V      +Q +    +R   ++ GS   +W+W         
Sbjct: 782 LLLVFSIIALSLAWYRQRQVRTFMAMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYL 841

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                ++LG  +  +   +      +H  DR       +S +     R + E+R +    
Sbjct: 842 DNR-GSVLGSHANEIVATLETLP--VHPEDRGKALAQWNSMLAGEIDRFEAEYRYQRRSG 898

Query: 491 QFHWMIIRIRPM-SNSNGDIL-RYIGIANDITEQKKSLEGILCNA 533
            + W+ +R RP+  N    ++ R  GI +DIT Q++  + I   A
Sbjct: 899 NWGWLRVRGRPVARNKQTQVIERVAGIYSDITLQRQLEDEINLLA 943


>gi|144901003|emb|CAM77867.1| Sensory box/GGDEF family protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 840

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 146/604 (24%), Positives = 274/604 (45%), Gaps = 9/604 (1%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +         +  + L    +   +   +       + +    E  S  +    D+V   
Sbjct: 236 IGASFPLELSLNAMELGGQRLFVAIAHDITERKAAEEELRKQKEWLSTLINAMPDLVCFK 295

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRL 479
           D     +        I GL     HG     L ++     +     ++ D      +  +
Sbjct: 296 DGKGKWLVANKFYLDIAGLDHVDYHGRTSADLAHMSRGFGEFMLTGSLSDERAWQEKKPV 355

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            YE  +   D       +   P+   +G     + +  D+TE+K +   I   A  D+LT
Sbjct: 356 AYEKELPTPDGGAKVFDVIKIPLYEEDGARRGLVMVGRDVTERKLAAARIHHLAHHDSLT 415

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR  F +RL T L  +    + +  +M +D+DK+K IND LG  +GD +L ++ +R+
Sbjct: 416 GLPNRVLFQERLRTALAQAKRLGH-KVALMFLDLDKFKDINDTLGHHLGDLLLKAVAKRL 474

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              ++  D +ARL G+ F ++L + ++    ++ A ++  SI+ P  L E E+  + SIG
Sbjct: 475 LRCVRETDTVARLGGDEFAVVLTNLDDPEGASNVAESIIASISEPFGLDEHEVNTSTSIG 534

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
              +    + S  +LKNA+LAM+ +K  G N+   +        +    ++ DL +A+  
Sbjct: 535 ITIFPDDAVDSEVLLKNADLAMFRSKAEGRNNYHFYVAEMDAEIQARKVVEHDLRVALGT 594

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            +L + Y P+I +   E+VG EALI+W HP  G +S  EF+ IAE   +I  +  ++L R
Sbjct: 595 DQLEMHYQPLIEMKTGEVVGCEALIRWKHPTRGWVSPVEFIPIAERTDLIVPLGRWILHR 654

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESV 836
                  W      PP  I +N++     ++  L   +  ++ +T + P +++L  +E +
Sbjct: 655 SCLQGRDWARAGL-PPQKIAVNLSPVQFKNHTALLAMIADILDQTGFPPDQLQLEITEGI 713

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            M N E +  +L +LR +G+ +++DDFGT  S L+YL   P D +K + S +        
Sbjct: 714 AMQNVEATVDVLRQLRDMGVLISIDDFGTGYSSLNYLKRFPVDKLKIDRSFVVDIGLHPD 773

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             A++ +I+ +  ++ T +  + +     +  L   G D  Q  + A  L  +   + ++
Sbjct: 774 NAAVVNAIVTLGHSLGTRVNVEGVETIEQLDFLKAHGVDEAQGFYFAKALPPDEFARFVR 833

Query: 955 ERFP 958
           E+ P
Sbjct: 834 EKSP 837



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 45/163 (27%), Gaps = 17/163 (10%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDG-ERQSL-------AVLGSGDIVWDWDIVRDRVT 429
           ++ +   T + H  A             E   L        V  + D +  +       T
Sbjct: 124 LIQVFDVTTMSHREALLRQQARTMQALAENYRLSELHNRAIVDNTADAIVTFGEDGAIGT 183

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P    I G     + G     L                     R   ++ E   R   
Sbjct: 184 YNPAAIRIFGYDPYEIVGKSVGLL-------IPGVLGKSGQLETERFLDIRAEVVGRRKI 236

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                + + +  M    G    ++ IA+DITE+K + E +   
Sbjct: 237 GASFPLELSLNAM--ELGGQRLFVAIAHDITERKAAEEELRKQ 277


>gi|157373575|ref|YP_001472175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
 gi|157315949|gb|ABV35047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
          Length = 1485

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 135/563 (23%), Positives = 256/563 (45%), Gaps = 12/563 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  D +  + A   + + V   D       +     TI+G  +  +     + L  
Sbjct: 924  AQRQLEDDVKLLAQAFGNTSEGVLILDASERIKVSNKAAQTIIGSDARVLTHKYFSDLMV 983

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                  D    +LD            E      +     + + +  M    GDI  Y+ +
Sbjct: 984  AKEGRSDEIAHLLDQ-----GVSWTGEREFVCTNGSSCPVWLNVSTMLGGKGDITHYVAV 1038

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   +  +      +  ++ +D+D+
Sbjct: 1039 FSDITERKRTEADLRRLANYDVLTGLPNRSLFSTRLAQSIHRA-EHSGEKLALIFLDLDR 1097

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND  G ++GD +LV    R+   +     L R  G+ F +++   +N  KI     
Sbjct: 1098 FKHVNDSYGHSMGDALLVEAASRLQSCISEEHTLCRFGGDEFVLLIRDADNIDKINHVCT 1157

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   I  P  L  RE  ++ SIG + W         ++KNA+ AMYHAK  G  + + F
Sbjct: 1158 ELLVQIEAPFELFGREFFISTSIGVSLWPDDTRQPEVLIKNADQAMYHAKEEGRGNFQYF 1217

Query: 696  RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNI 752
                       + ++ +L  A+E  E  L Y P + +   ++++G+EAL++W H K G +
Sbjct: 1218 SSERNAEALYHLRLEGELRKAIERDEFELHYQPQVDILRGDKLIGMEALLRWRHHKDGLV 1277

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             +  F+ +AE   +I  I+ ++L +       W +        + +NI++      +  +
Sbjct: 1278 RTDVFIKVAESCGLIIDIDRWVLRQACVQGALWANSY-KENFKLSVNISAVHFRQPDFID 1336

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G+++++ +T   PS +    +E V+M     ++  L  LR++GI + +DDFGT  S L+Y
Sbjct: 1337 GVRSILEETKIPPSALGFEITEGVLMKELHIAKDHLRDLRELGIDVAIDDFGTGYSSLAY 1396

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L +   DT+K + S +      E   AI  SII +A+N++  ++A+ +  +  ++++   
Sbjct: 1397 LRHFDVDTLKIDRSFLIDIATNETDQAIASSIIELARNLKLNVVAEGVETKDQLEQVFSR 1456

Query: 931  GCDYIQDSHVASPLGFNSILKLL 953
            GC  IQ  + + PL  + +   +
Sbjct: 1457 GCYVIQGYYFSKPLTVSDMESYM 1479



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 11/178 (6%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF----SQGIFSDGERQSLAVLGSGDIV 418
                     G ++  V+ IG  VI +           +  +    +R   ++ GS   +
Sbjct: 763 QFWWQTQWFNGLILFTVLCIGIGVIVYRQRQVKAFKLVNSALVESEDRLRQSLKGSDSEL 822

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRG 477
           W+W       +     A             +     + +H +++D      ++ +     
Sbjct: 823 WEWRHDTQMFSLENRGAK----RKEDRKNKLLKLKDFPVHRDEKDKVLASWNNMIEGYSD 878

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIANDITEQKKSLEGILCNA 533
           R   E+R R  D  + W  +R RP+    ++G ILR  GI +DIT Q++  + +   A
Sbjct: 879 RFDVEYRYRREDKTWGWTRVRGRPVELDPASGKILRVAGIYSDITAQRQLEDDVKLLA 936


>gi|313679060|ref|YP_004056799.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf sensor(s)
            [Oceanithermus profundus DSM 14977]
 gi|313151775|gb|ADR35626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Oceanithermus profundus DSM 14977]
          Length = 1034

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 152/566 (26%), Positives = 271/566 (47%), Gaps = 12/566 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            ++ V       Q +    ER    +  + DI    D        +P +  +LG     + 
Sbjct: 472  MRDVTEARRLEQALARSEERFRTILQNTSDITAVLDEEMRIRYISPAVEAVLGHKVRDLV 531

Query: 447  GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            G        IH +DR      L + +      +   FR+R+A  +  W+ +R R +  +N
Sbjct: 532  G--LTVGESIHPDDRPAAERSLRAALEDPSRPIHVTFRIRSASGETRWLEVRGRNLL-AN 588

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
              +   +  A DITE K     I   A+ D LTG+ NR+   +R+   +           
Sbjct: 589  PAVRGILVSARDITEHKVYEAQIEHMAYYDALTGLANRRMLRERVEEAIRELG--GGGGF 646

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
              + ID+D++K +ND LG  +GD +LV + RR+ E     D+LARL G+ FG +L   ++
Sbjct: 647  AFVYIDLDRFKNVNDTLGHDIGDALLVQVARRLEEQTGPGDVLARLGGDEFG-LLARRDD 705

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               + + A  + +++  P N+    I V+ S G A + +   T  ++L++A++AMY AK 
Sbjct: 706  QEGVLELAQRLIQALRPPFNVEGHHIHVSGSAGIALYPTDGETFEQLLRHADIAMYRAKD 765

Query: 687  RGGN-HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
               +    S  ++ +  +R  ++ DL  A+++  L L Y PI  +   E+ GLEAL++W+
Sbjct: 766  DKVHLQFYSPHLNVYTHERFQLETDLRTAMQSGSLILYYQPIQNVQ-GEMRGLEALVRWE 824

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP  G I   EF+ + EE  +    +  +L +  R I  WR     PP+++ +N+    L
Sbjct: 825  HPTRGQIFPEEFLPLIEEAGLATGFDRQILTQAVRQIARWR--GAEPPVWVSVNVGYASL 882

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            LD      ++ L  +    P R+ +  +E+    +PE+++ +LG L+++G+ L LDDFG 
Sbjct: 883  LDPGFLGFLEQLFKEEQVEPERLLIEVTETQASRDPEQTKRVLGHLKELGVQLALDDFGQ 942

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S LSYL   P D +K + + ++G     K   I+R I+ +A  +   ++A+ +  E  
Sbjct: 943  GYSSLSYLSDFPIDLIKIDRAFISGVPFRTKDAGIVRMIVALASQLGIDVLAEGVETETQ 1002

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSI 949
             + L  +G  Y+Q   ++  L    +
Sbjct: 1003 REWLQHVGVHYLQGYAISEALPPAEL 1028



 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/195 (10%), Positives = 54/195 (27%), Gaps = 17/195 (8%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPA---------LVGGLVLIVILIGFTVIQHVLATG 394
            +++    +G  + +   +       A           G  ++ V+      +   +   
Sbjct: 295 RLMLEASGVGSILLLPLLIGGAFWGFAGFELTETNRRFGHEMIRVLRTAAASLAAGIERV 354

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             ++ +             +GD +   D     +        I GL++  +       L 
Sbjct: 355 ERTRELSVQRSLLERINEAAGDGILAVDAQWRPLFYNRRFLEIWGLSAEELSAEGSAGLS 414

Query: 455 YIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
            +    +    F  +L          +  E R+   D +      +        G+    
Sbjct: 415 VLTRRTKNPKRFAEVLLELHERPDRNVHIELRL--KDGRIL----QASSAPLDGGETGGR 468

Query: 513 IGIANDITEQKKSLE 527
           +    D+TE ++  +
Sbjct: 469 VWFMRDVTEARRLEQ 483



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 59/164 (35%), Gaps = 14/164 (8%)

Query: 342 PAWILIFIWF-IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-- 398
            +WIL+F+   + + +A T R     +   L      + + +G          G      
Sbjct: 5   LSWILLFVSAALIVGLAGTWRKRRSALLTGLGLAFTALGLALGGGAGWAATGLGLALIVW 64

Query: 399 GIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            + +   R S  A+  S D        R R+  + ++  +LG  +  +HG    +   I+
Sbjct: 65  AVVAPRPRASSRALELSVD-------ERGRLVRSRNLEALLGWVTEEVHGEP--FAGLIY 115

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             DR  +  + +  +         E R   A  +  W+ + + P
Sbjct: 116 PEDRPLWEKVQEQVLETGEAT-TLELRAVHAAGRLVWLRVFVEP 158


>gi|28896866|ref|NP_796471.1| hypothetical protein VP0092 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364666|ref|ZP_05777261.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260877767|ref|ZP_05890122.1| signal transduction protein [Vibrio parahaemolyticus AN-5034]
 gi|260895583|ref|ZP_05904079.1| signal transduction protein [Vibrio parahaemolyticus Peru-466]
 gi|28805074|dbj|BAC58355.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088549|gb|EFO38244.1| signal transduction protein [Vibrio parahaemolyticus Peru-466]
 gi|308090043|gb|EFO39738.1| signal transduction protein [Vibrio parahaemolyticus AN-5034]
 gi|308112621|gb|EFO50161.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 811

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/552 (25%), Positives = 260/552 (47%), Gaps = 17/552 (3%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +      + I G ++  + G   N L   H +D  
Sbjct: 267 QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 324

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 325 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 383

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   +++           + +DID +K IND 
Sbjct: 384 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 438

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F I+L   +    + +   ++     
Sbjct: 439 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 498

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + ++ SIG A + +    S  +LKNA+ AMY AK  G N    +      
Sbjct: 499 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 558

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L+LVY P   L    I+G+EAL++W+HP++G +  ++F+ 
Sbjct: 559 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 618

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I+ I  ++L+        W  +       I +N+++  L  +     ++ ++ 
Sbjct: 619 IAEKTGLIQNIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 677

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R++L  +ES ++ +P+ +   L +L ++GI ++LDDFGT  S LSYL  +P +
Sbjct: 678 ETGFPAHRLELEITESFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 737

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   +     AI+ +II M   +   ++A+ I     +  L   GC Y Q 
Sbjct: 738 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 797

Query: 938 SHVASPLGFNSI 949
              + P+    +
Sbjct: 798 YLFSPPVAAEKL 809



 Score = 45.3 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 421 WDIVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W    D +       +      ++  + G              + F       V      
Sbjct: 160 WIKTTDGLYAMTNRSVEQAWKKSNDDIVGKND--FDLFSAERAEKFIDADRLVVATGTQN 217

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  E R    +N   W+     P+ N  GD++  +G+  +IT ++K +E  L  A
Sbjct: 218 IVEECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 271


>gi|229099734|ref|ZP_04230660.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|228683704|gb|EEL37656.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 909

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 183/854 (21%), Positives = 340/854 (39%), Gaps = 30/854 (3%)

Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175
             F   L    +         S  R+   D   F   ++P      +       L    L
Sbjct: 66  RLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFAL 116

Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYIS 233
                     +       I      + A F   +Y++   ++ + T +    +V L Y  
Sbjct: 117 AFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYPM 176

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSGI 290
            D  FL   +NL    L +        L S+LI++      Y +   +       T +  
Sbjct: 177 ADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTPF 236

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF-I 349
             + ++               +  +     +     +          ++ I A  +   I
Sbjct: 237 YQVVLVLAAIACILHTKEPEKQEQVLLTPKFGESIRLLLPYISVVMLIIFILAEYVFAPI 296

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDGE 405
             IGL +  T  L    +       L+L  +        Q  L T    +    ++ + +
Sbjct: 297 VVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQQ 356

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                     D ++  D+  + +       T+LG  +  +      +   I+  D +   
Sbjct: 357 MFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEII 414

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                        +  E R    +   +++ +   P+   +  I     +  DITE K+ 
Sbjct: 415 NAFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQQ 471

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A+ D LT + NR++F   L   +  +         VM +D+D++K IND LG 
Sbjct: 472 QEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFLDLDRFKVINDTLGH 530

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L+++ +R+  L      LARL+G+ F I++ +      +   A  +  ++  P 
Sbjct: 531 RVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVVAMNKPF 590

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +  + + ++ SIG A +  +      +L++A++AMY AK++G N    +    ++    
Sbjct: 591 EIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIER 650

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++DL LA+ N E YLVY P I     +I+G EALI+W HP  G+IS  EF+ I EE
Sbjct: 651 KARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEE 710

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +  +  ++L+     +  W        + I +N+++K+   N+L E +  +++    
Sbjct: 711 TPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQV 769

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + L  +E + M N + +   L +L++ GI   +DDFGT  S L+YL   P DT+K 
Sbjct: 770 DPKHVTLELTERIAMINEKETLSRLKQLKEYGIRTAIDDFGTGYSSLAYLSIFPIDTLKV 829

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                       +  AI  +I+ +A  +  ++IA+ I  E  +K L +  C Y+Q  + +
Sbjct: 830 PREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYFS 889

Query: 942 SPLGFNSILKLLKE 955
            PL     +K L++
Sbjct: 890 KPLTSKQFIKFLQK 903


>gi|71908953|ref|YP_286540.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848574|gb|AAZ48070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 655

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 154/639 (24%), Positives = 290/639 (45%), Gaps = 23/639 (3%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ-----------PALVGGLVLIVILIG 383
            + VL     +++    IGL + I  R     I            P     L+++ +L+ 
Sbjct: 17  RKFVLFAMGAVVLVWCLIGLDLWIASRHAAAKISFLPGETTPSELPTWKLFLLVLSVLLT 76

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V+Q         + + +    Q L V  + + +   D  +  ++       I G A  
Sbjct: 77  ALVVQAYRQLLATKRQVEAGLALQRLIVDHASEAMMLTDSAQRILSVNSAFEQITGYAGK 136

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     L   H     + R + D       G  + E   R  D   +   +RI  + 
Sbjct: 137 DVFGKTPTMLSAGH-QGLASHRNVWDFVAEN--GSWEGEIWDRRKDGTIYPKQMRITAIC 193

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                +  ++ + +DI+E +   E +   A  D LT +PNR +    L T+L+ + T   
Sbjct: 194 EDGVQLSHFVAVFSDISESRAQAERLEYLARHDPLTNLPNRLALDAHLDTLLEGA-TPGI 252

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  +++ID+D +K IND LG   GD +L  L RR+G  +     L RL G+ F +++  
Sbjct: 253 NRLALLIIDLDNFKTINDSLGHHAGDRLLSELARRLGAQMDLTKRLFRLGGDEFVVVVDQ 312

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N   + +    +   I  P N+    +  T+SIG + +      +  +++NA+ AMY+
Sbjct: 313 LINEEAVIELVQQLAGGIGDPCNIDGHVLHCTSSIGISLYPEDGRDAQALIRNADTAMYY 372

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+ + F   +++  + R+ ++ +L  A+  ++L L Y P I L+  ++VG+EAL
Sbjct: 373 AKANGRNNHKFFTEPMNAAANKRLHLESELWCALAENQLVLYYQPQIDLLSGKVVGVEAL 432

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G I  +EF+ +AEE  +I  +  ++L    R    W D        + +NI+
Sbjct: 433 VRWRHPLRGLIPPAEFIPVAEECGLILPLGHWVLLTACRQAREWLDAGIDMG-EMAVNIS 491

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +      E    +QA++++T     R++L  +ES +M   + +   L +LR +GI L +D
Sbjct: 492 AHQFRQPEFISSVQAILAETGLPTGRLELEITESTIMHEVDAAIQTLAQLRAMGIKLAID 551

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D +K + S +    +     +++ SI+ + +++   ++A+ + 
Sbjct: 552 DFGTGYSSLAYLRRFPLDRLKIDRSFLADVETDPDAASLVTSIVLLGRSLGLQLVAEGVE 611

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL---KLLKE 955
                + L  + C+ +Q  H   P+    ++   + L+ 
Sbjct: 612 NFAQAEFLRTLECERVQGFHFYQPVCAEEVVGVGRFLEN 650


>gi|229076515|ref|ZP_04209476.1| Sensory box/GGDEF [Bacillus cereus Rock4-18]
 gi|228706607|gb|EEL58819.1| Sensory box/GGDEF [Bacillus cereus Rock4-18]
          Length = 909

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 183/854 (21%), Positives = 341/854 (39%), Gaps = 30/854 (3%)

Query: 116 HFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYL 175
             F   L    +         S  R+   D   F   ++P      +       L    L
Sbjct: 66  RLFWIILSVGALSYFIGDIVVSYQRLILKDYYTF---VDPSDFFYLL------FLISFAL 116

Query: 176 WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLGYIS 233
                     +       I      + A F   +Y++   ++ + T +    +V L Y  
Sbjct: 117 AFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIEQTIHVFTTSYIDIFVQLTYPM 176

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITFSGI 290
            D  FL   +NL    L +        L S+LI++      Y +   +       T +  
Sbjct: 177 ADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDAIYAYIKYFTPAYSMFTVTPF 236

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF-I 349
             + ++               +  +     +     +          ++ I A  +   I
Sbjct: 237 YQVVLVLAAIACILHTKEPEKQEQVLLTPKFGESIRLLLPYISVVMLIIFILAEYVFAPI 296

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSDGE 405
             IGL +  T  L    +       L+L  +        Q  L T    +    ++ + +
Sbjct: 297 VVIGLIITFTFVLIRHSLVRKQNKILLLAQMQFNLELEKQIELRTEDLVEQKNELYHNQQ 356

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                     D ++  D+  + +       T+LG  +  +      +   I+  D +   
Sbjct: 357 MFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEII 414

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +           +  E R    +   +++ +   P+   +  I     +  DITE K+ 
Sbjct: 415 NVFHRVKKGN--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HISGVYLMIKDITESKQQ 471

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A+ D LT + NR++F   L   +  +         VM +D+D++K IND LG 
Sbjct: 472 QEQINFLAYHDTLTELANRRAFHQYLEKAIARAKIS-KSSFAVMFVDLDRFKVINDTLGH 530

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L+++ +R+  L      LARL+G+ F I++ +      +   A  +  ++  P 
Sbjct: 531 RVGDLLLIAVAKRLERLSTQHMKLARLAGDEFTILIENYKKRTDVKKIADMIVVAMNKPF 590

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +  + + ++ SIG A +  +      +L++A++AMY AK++G N    +    ++    
Sbjct: 591 EIENQHLRISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNRSSLYTKELYKKIER 650

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++DL LA+ N E YLVY P I     +I+G EALI+W HP  G+IS  EF+ I EE
Sbjct: 651 KARIEKDLPLALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEE 710

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +  +  ++L+     +  W        + I +N+++K+   N+L E +  +++    
Sbjct: 711 TPQVVPLGHWVLKEACLQLKIWH-TFGYQNLKISVNLSAKEFQQNQLIENISQILNDVQV 769

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + L  +E + M N + +   L +L++ GI   +DDFGT  S L+YL   P DT+K 
Sbjct: 770 DPKHVTLELTERIAMINEKETLSRLKQLKEYGIRTAIDDFGTGYSSLAYLSIFPIDTLKV 829

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                       +  AI  +I+ +A  +  ++IA+ I  E  +K L +  C Y+Q  + +
Sbjct: 830 PREFTQLADHRPEERAIFSTILSLANTLNLSVIAEGIETEKQLKFLQKNNCKYMQGYYFS 889

Query: 942 SPLGFNSILKLLKE 955
            PL     +K L++
Sbjct: 890 KPLTSKQFIKFLQK 903


>gi|186470454|ref|YP_001861772.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia phymatum STM815]
 gi|184196763|gb|ACC74726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia phymatum STM815]
          Length = 1061

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 265/562 (47%), Gaps = 10/562 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +    E  +     S + +   D  R  +T         G  +  + G    +   +   
Sbjct: 499  MEQRLELWAKVFEASSEAILILDQERRLLTANASFYRATGYRAEDIAGKPPAF--IVAGA 556

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            +     T L + V  R      E ++R      +   + I  + +  G +  YI    DI
Sbjct: 557  NSGAVITALATLVD-RSSSWNGEAQIRRRQGGDYPAWLMISAVRDKRGSVSHYICTLIDI 615

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++KKS   I   A  D LT +PNR  F  RL  +LD +      R  V+ ID+D++K I
Sbjct: 616  TDRKKSEARIEFLAEHDVLTELPNRALFTKRLGVVLDNAKHAQQ-RVAVLFIDLDRFKDI 674

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMR 638
            ND LG  +GD +L S++RR+ + ++  D ++RL G+ F ++L    ++  +A      + 
Sbjct: 675  NDSLGHHIGDGLLRSVSRRLVQAVRSGDTVSRLGGDEFTMVLADAGSAADVARTIDERLL 734

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +  P  +    + V  S+G A +         +++NA+ AMY AK  G N V+ F   
Sbjct: 735  PLVREPHAIGGVTLQVACSVGVALYPDDGADIETLMQNADAAMYQAKAAGRNLVKFFSPD 794

Query: 699  S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   R+ ++  +  A+E  EL L Y P +      +V +E L++W HP+ G ++ S+
Sbjct: 795  MAERARQRLALEACMRTAIERRELRLAYQPCLDAQTGALVSVEGLLRWTHPQLGAVTPSQ 854

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  I  +++++  R +  WR+      + + IN+++  L D +L E ++ 
Sbjct: 855  FIPIAEETRLIIPIGAWVIDQACRQLARWRNAEMGE-LRMSINLSAIQLRDADLVETLRH 913

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +     +P R++L  +E+V+M + E     +  +R +G+ L+LDDFGT  S LSYL   
Sbjct: 914  SLVTHGVAPQRLELEITETVLMDSAENYLDAICAIRALGVKLSLDDFGTGYSSLSYLNRF 973

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K + + +         +A++++II +   +   ++A+ +  E +   L  +GCD 
Sbjct: 974  PLDRLKIDRAFVRDMLDAPADLAVIKAIIELGHELGLRVVAEGVESEDEANTLRSIGCDE 1033

Query: 935  IQDSHVASPLGFNSILKLLKER 956
            +Q    ++ L    +    ++R
Sbjct: 1034 LQGFLYSAALSAEELETWAQQR 1055


>gi|120599648|ref|YP_964222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120559741|gb|ABM25668.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1018

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 148/557 (26%), Positives = 258/557 (46%), Gaps = 10/557 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            I    +  +L    S + +   D     +T     + I G  +  + G     L Y  IN
Sbjct: 451  IEESLKLSALVYDNSSEAMSVLDEKGVIITVNAAFSDITGYKAKEVCGQHIRLL-YCDIN 509

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             RD +  + ++    ++G+ Q E   R  + + + + + I  + +  G   R + + +DI
Sbjct: 510  GRDFYDKMNNAI--NQKGQWQGEMLQRRKNGEEYVIWLTINTIKDKEGMPYRRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++   I   A  D LTG+PNR+  L+ L   +  +  + +    ++ +D+D +K++
Sbjct: 568  TDKKQNEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKNADRNQD-HFALLFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG  +GD +L+    R+   ++  D++ARL G+ F ++L +  +   I   A  + +
Sbjct: 627  NDTLGHEMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSAMADHKGIERVAEHILR 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             IA P  L E    +TASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RIAEPYLLGEETAYITASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ + +DL  AV N E  L Y PI+ L   E+   EALI+W H + G++S  EF
Sbjct: 747  QEYAKYRMRLIQDLRQAVSNKEFELHYQPIVSLTTGEVAKAEALIRWTHAERGSVSPGEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQA 816
            + +AE+  +I  I  ++ E+ AR   +WRD+     I I +N +     D   L      
Sbjct: 807  ISVAEDTGLIVEIGNWVFEQAARQSAAWRDELG-VDIQISVNKSPIQFRDEGALLHNWLE 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     + + + +  +E +++         L   R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLQDLNITGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +  E   + L   GCDY
Sbjct: 926  DIDYLKIDQSFTRHIDTDTNDQILCEAIIVMAHKLGMKVIAEGVETEAQRQVLLSAGCDY 985

Query: 935  IQDSHVASPLGFNSILK 951
             Q    + P+      +
Sbjct: 986  GQGYLFSKPIAAIDFAQ 1002



 Score =  114 bits (285), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 2/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+       V A     + + +  E+  L +  S   VWDWDI  DR+      A ILG 
Sbjct: 306 LLVIAGYLDVTAQTLADREVLASREQLELVLNSSDLGVWDWDIRNDRIERNARSADILGC 365

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               ++   R W+  I   DR      +++ +     + + E+R+   + Q  W++   +
Sbjct: 366 DIDMLNANSRQWMDAIVAEDRPKVLHSIEAHIRGETPQHKMEYRLNTLNRQVRWILDTGK 425

Query: 501 PM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-QD 536
            +  ++N + LR  G   DITE K   E +  +A   D
Sbjct: 426 VVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYD 463



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 78/263 (29%), Gaps = 14/263 (5%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           I+      +  L  ++       +         + +  +  +I    + Y ++ L   + 
Sbjct: 75  ISGLFFGGLPTLIAVALTGFYRLSIGGDAMWIGVAVIVSSGLIGVIWRQYRKSYLANISA 134

Query: 345 --ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGY 395
             +L F + + + M +        +   L+  L L V+        +   ++        
Sbjct: 135 KEMLCFAYTVHIVMLLWFFTLPLPVALPLLAKLSLPVLTVYPLATWLLSRLLSRRFELER 194

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q    D              +    I +  +   P +  +L      +      W   
Sbjct: 195 DEQIRLQDDFLFRSQFTVGNIGIAITGIDQKWMKVNPHLCQMLKYTENELLN--MTWKQL 252

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H +D +      +  +  +    + + R  A D    +  + +     +N  +L  I  
Sbjct: 253 THPDDIEADIVKFELMLAGKIDNYEMDKRFIAKDGSIVYTHMTVAC-KRANNRVLLVIAG 311

Query: 516 ANDITEQKKSLEGILCNAFQDNL 538
             D+T Q  +L      A ++ L
Sbjct: 312 YLDVTAQ--TLADREVLASREQL 332


>gi|325982844|ref|YP_004295246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325532363|gb|ADZ27084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 576

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/555 (25%), Positives = 256/555 (46%), Gaps = 8/555 (1%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           FSD  +    +      ++  D     +          GL+   + G   +         
Sbjct: 21  FSDVSKFQELIDLLPIAIFIKDTESKLLAINKACELQWGLSFKDLQGTDAS--QIFPPAQ 78

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            ++F                 E    +   Q   +    +P+ +++G  L  IG+  DIT
Sbjct: 79  MEHFLAKDQEVFESGCQIDFEETMWNSMLKQNRMVHTFKKPICDTSGKPLYLIGMFVDIT 138

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++ + IL  A  D LTG+PNR    DR+   L+    +   R  ++ ID+D +K IN
Sbjct: 139 ERHRAEQRILEMATYDILTGLPNRALLKDRIERALEHGNRNRQ-RVALLFIDLDNFKVIN 197

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L ++  R   +++  D +AR  G+ F ++L +  ++      A  +  +
Sbjct: 198 DSLGHDVGDKLLQAVAARFVSIVRGEDTVARQGGDEFIVLLSNLESAFDAEAVAQKILNA 257

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           + +   +  +E+ ++ SIG + +         +L+N+++AMYHAK  G N+ E F+    
Sbjct: 258 LQLHFLIDGKELHISGSIGISLFPDDGEDIWTLLRNSDIAMYHAKKNGRNNCEFFKPEMN 317

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R  ++  L  A++  EL L Y PI+ +   +  G E L++W HP  G I   +F+
Sbjct: 318 RQAKERHSMEVALRNALKRDELLLHYQPIVNVNGGKADGFEVLLRWQHPGDGLIYPVKFI 377

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  MI  I  +++ +    I +W++Q    P  + IN+++       L E +  ++
Sbjct: 378 RLAEETGMIIPIGEWLMRQSCLQIKAWQEQGYEVP-RLAINLSAIQFRQKTLMENIVRIL 436

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T  +   + L  +ES ++ + E +   L +L ++GI +++DDFGT  S LS+L     
Sbjct: 437 DETGVTGHYLTLEITESELIEDVEETIKTLRQLSELGIEISIDDFGTGYSNLSFLKRYQI 496

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + S +          AI+ +I+ MA  +   +IA+ +  E  +  L   GC   Q
Sbjct: 497 NTLKIDRSFVRDIPDDPDDTAIIDAILVMAHALGLQVIAEGVENEQQLAYLALHGCTRFQ 556

Query: 937 DSHVASPLGFNSILK 951
             + + PL    I K
Sbjct: 557 GFYFSKPLPAIEIEK 571


>gi|71908454|ref|YP_286041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848075|gb|AAZ47571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 714

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 263/577 (45%), Gaps = 14/577 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
           ++ +         +     R       S   ++        +   P +A + G +   ++
Sbjct: 143 LEDITDRVQAQIQLTETELRYRSIFENSVVGMFQSTESGRYLAANPALARLYGYSTPEAL 202

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              + +    ++     R++F+ ++      R    + E  +   D    W+      + 
Sbjct: 203 ISSLADIASGLYVDPQRREDFKQLIQR--DGRVTNFESE--ITCRDGSRIWIAEHAHAVR 258

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +++G  L Y G   DITE+ +    +   A  D LTG+PNR    DRL   + L+    +
Sbjct: 259 SADGSFLYYEGTVEDITERHRYQSVLQHQATHDPLTGLPNRNLLEDRLAQAVQLARRKSS 318

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  +  +D+D +K IND LG A GD +L+ ++ R+   L+  D +AR  G+ F +IL  
Sbjct: 319 -KVALAFVDLDNFKVINDSLGHAAGDQLLIEISSRLRAALRGLDTVARYGGDEFVLILGE 377

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           + +          +  SI  P+ L    + +  SIG + +         +L+ A++AMYH
Sbjct: 378 QTSMADTMHLLERVLVSIQAPLALEGHGLRINCSIGVSVFPDDAQDLDGLLRVADVAMYH 437

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      +    +    DR  ++  L  A+EN+EL +VY P +      + G EAL
Sbjct: 438 AKESGKGQYCFYTRDLNQAAQDRFSLETALGSAIENNELTVVYQPKVDGE-GMVRGFEAL 496

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+    G ++   F+ +AEE   I AI   +L    R   +W    +   + + +N++
Sbjct: 497 VRWNSAGRGLVTPDRFIPLAEETGQILAIGEQVLYAACRTAANWP-LIDGQALSVAVNLS 555

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ L +  L   +   ++ +   P  ++L  +ES++MG+ E +  +L  ++ +G+ + +D
Sbjct: 556 ARQLREPGLPGLVADALAVSGLPPECLELEVTESMIMGDMEHNIRVLKSIKALGVRIAVD 615

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S ++G      A+    +II + K ++  I+A+ + 
Sbjct: 616 DFGTGYSSLAYLQRLPIDTLKIDRSFVSGCNRGGKAMAIPHAIIFLGKTLDLHIVAEGVE 675

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + +   L   GC+  Q    + PL   ++   L+ +
Sbjct: 676 TDEERAILAVCGCNEFQGYLFSRPLQSAAVDTYLQAK 712



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           ++ +P    + G  +  + G  +N L  + H  DR   R  + + +     R   E+R+ 
Sbjct: 56  LSVSPGCHELTGFRADDLVGKQQNSLESLAHPEDRAAVRGTILAALET-GSRYSIEYRIV 114

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             D +  W+  R   + +  G  +   G   DIT++ ++ 
Sbjct: 115 CRDGEEKWVQERGVGLRDEAGRQV-LEGYLEDITDRVQAQ 153


>gi|307822007|ref|ZP_07652239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736573|gb|EFO07418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 845

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/572 (25%), Positives = 281/572 (49%), Gaps = 23/572 (4%)

Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-Y 455
           +    +   LA   +  + + V   D      T       I G     + G     +   
Sbjct: 275 LRDSLKSLGLAKKIIDNTQEGVITTDKYVVIQTCNAGFTKITGYTEEEVIGKTPGIISSG 334

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIG 514
            H  D++ +  + +     + G  Q E   R  + + +  ++ I  + +    +I  Y  
Sbjct: 335 RH--DKNFYYAMWEKI--NKYGFWQGEIWNRRKNGEVYPELLTITEIRDDETNEISNYAA 390

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +DI++ K   E I   AF D LT +PNR+   DRL   L ++         ++ ID+D
Sbjct: 391 IFSDISQLKSDEEEIKRLAFYDPLTELPNRRLLNDRLAQELAITGRSGK-NGALLFIDLD 449

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629
            +K IN+ LG + GD VLV +  R+   ++  D +AR+S + F +IL   N        +
Sbjct: 450 HFKNINETLGHSAGDRVLVEVAYRLKLRVRDCDTVARISSDEFVVILTELNEQIGLACNE 509

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRG 688
               A  ++++I    +++  ++ +++SIG A ++ +      ++LK A  AMY AK  G
Sbjct: 510 ARYIAEKLQQTICQVYSVMNHKLYISSSIGIAMFSENSDIPPDDLLKQAGTAMYRAKESG 569

Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N ++ F+ S      +R++I+++L  A++ ++L L Y P +      ++G EALI+W+H
Sbjct: 570 RNMLQFFQDSMQEAAMERMLIEKELRQALDENQLSLYYQPQVDYH-GTLMGAEALIRWNH 628

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK G I   +F+ IAEE  +I+A+  ++LE+    +  W       P  + INI+ +   
Sbjct: 629 PKKGFIPPDKFIPIAEECGLIQAVGAWVLEQSFIHLRQWDRLQVHLP-HLAINISPRQFY 687

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            ++    +  L+ +   SPSRI L F+E ++M + + +   + +L+K+G + ++DDFGT 
Sbjct: 688 HDDFMGILGRLVKQYQISPSRIMLEFTEGLLMNDVDVAIDKIKQLKKLGYTFSIDDFGTG 747

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL ++P D +K + S +      E     + +II +A+++   ++A+ +  ++++
Sbjct: 748 YSSLSYLKHLPVDQLKIDKSFVEDITKNEDDAVFVGTIIAIARHMNLGVVAEGVESKMEL 807

Query: 925 KELTRMGCDYIQDSHVASPLGFNS-ILKLLKE 955
           + L + GC   Q  + + PL  +      L++
Sbjct: 808 EFLKQNGCLCYQGYYFSKPLPEDQFFEHWLRK 839


>gi|289208212|ref|YP_003460278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943843|gb|ADC71542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 842

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 156/793 (19%), Positives = 316/793 (39%), Gaps = 37/793 (4%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL------SKLVNLPSG 248
           +  V   + +F   +++ +R   L+ T  +A   L    +DF  L         +   S 
Sbjct: 55  LFAVVVAIGVFAVAYHVRDRRR-LMATLVLATAFLAVGLLDFLHLMTYPQMPDFITPNSS 113

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY------ 302
           +  I+   +   + +  ++         R          +G   +  L            
Sbjct: 114 QQTIFFWLAARLVGALALLLYVALPLVPRSQGPAPRGMLAGALVLVALLAWVGLWHEQRI 173

Query: 303 -------YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
                    +    IA   +   +   T  I+    +  +R  + + A  L+ +    ++
Sbjct: 174 PALFIPGEGLTPFKIALEGVVVALHAATLVILLLRPQLMQRPGMPLVAAALMILMASEVF 233

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA----TGYFSQGIFSDGERQSLAV 411
             +   L +       +  +    ++     I+ V A         + I    +R    +
Sbjct: 234 FTLYDNLSDGFFVLGHIYKVAAYALIYWAVFIESVRAPMAQLRAAHRDIELRQQRYEQLI 293

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILD 469
             + D V   D     +    ++  + G     + G     L    +  + R       D
Sbjct: 294 DTAPDGVLVTDGGGTILMANRNLERLFGYPRRHLIGQPVENLIPERLREHHRSVRLQQGD 353

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +      G++  + R R  D     + I +    +  G   R      DIT++++    I
Sbjct: 354 NISERTMGQIP-DLRGRRLDGTEFPVDISLNAFEDQGGR--RITAFIRDITDRQRREARI 410

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LTG+PNR    DRL   +  ++  ++ R  VM++D+D +K IND  G   GD
Sbjct: 411 QHQATHDSLTGLPNRWLLHDRLAQSIAHASRHEH-RIAVMLLDLDHFKMINDTFGHHEGD 469

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L  + +R+ +       + R  G+ F I+L    + L++ +    +      P +   
Sbjct: 470 ELLREVAQRLKDAAGTDATIGRFGGDEFMILLPEITDELQVGERGQEILAQFDRPFHTGP 529

Query: 650 -REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
            R+ + +AS+G A +      ++ +++ A++AMY AK  G N    +   + +       
Sbjct: 530 TRQFSSSASLGIALFPQDARDANTLVRYADMAMYEAKRSGRNTYAFYSEHLDAQVRAEQQ 589

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++E L  A+E+ +L L + P+I      +   EAL++W+ P+ G +  S F+  AE   +
Sbjct: 590 LQERLKHALEHDQLALHFQPLIDAHSGAVTAAEALLRWNDPELGAVPPSRFIPSAEANGL 649

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++ R  + +  W          I IN+++      +L   + A + +   SP 
Sbjct: 650 ILPLGDWVIRRACQQLADW--AQLDVDTSICINVSALQFRQPDLVSRLAAALKEAGASPE 707

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  +E+V M +   +R  L  L+ +G+ ++LDDFGT  S L+YL  +P D +K + S
Sbjct: 708 HLEIEVTETVAMADVALTREHLSGLKALGVRVSLDDFGTGYSSLAYLKSLPIDKIKIDRS 767

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G    R A  ILRS++ +  ++   ++A+ +     +  L R GCD  Q    +  L
Sbjct: 768 FIAGIGHDRDAEMILRSVMGLGHSLHLKLVAEGVETAEQLAFLRREGCDLYQGWFYSPAL 827

Query: 945 GFNSILKLLKERF 957
                   +  + 
Sbjct: 828 SVEEFRATVHSQL 840


>gi|119944283|ref|YP_941963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119862887|gb|ABM02364.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 647

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 255/575 (44%), Gaps = 17/575 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                +  +    E   +A     S + ++  D     +        I G ++  + G  
Sbjct: 78  EKEKLAAELVIALE-FRIAATAFESQEGMFITDANNRILRVNKAYIRISGYSAEEVIGQK 136

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                     ++  ++ + DS         + E      +   +   + I  + ++NG +
Sbjct: 137 PKLFSS-GRQEKVFYKAMWDSI--NSTDAWEGEIWNSRKNGDIYPGHMTITAVKDTNGMV 193

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+ +  DIT  K + E I   A+ D LT +PNR+  L     +        +    ++
Sbjct: 194 SNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRL-LLDELNLALTINARTHQYGALL 252

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----E 624
            ID+D  K +N+  G  VG+ +L  +T R+ E ++  D +ARL  N F ++L +      
Sbjct: 253 FIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEFVVVLENLSPQAI 312

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             + +    A  +  ++  P +L   +   T SIG   +   ++ S E+LK A++AMY +
Sbjct: 313 KATAQTKQMAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEELLKQADIAMYQS 372

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N +  F  +   +  +   ++ +L  A++ ++  L Y   +     + +G EALI
Sbjct: 373 KDAGRNSLCFFNQTMLEAITIRAEMENELHKAIKQNQFQLYYQIQVNG-SGQALGAEALI 431

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS   F+ +AEE  +I  I  ++L+     +  W+       + + +N+++
Sbjct: 432 RWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLTQDLVLAVNVSA 491

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K     +  E ++  + +    P R+KL  +ES+++ N     + +  LRKIGI  +LDD
Sbjct: 492 KQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTLRKIGILFSLDD 551

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L YL  +P + +K + S +           I+R+II M+ ++   +IA+ +  
Sbjct: 552 FGTGYSSLQYLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSLGIDVIAEGVET 611

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + + L   GC + Q    + P+  +    LLK 
Sbjct: 612 VEEKQFLLNKGCTHYQGYLFSKPVPIDEFEALLKS 646


>gi|187926396|ref|YP_001892741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
 gi|241665883|ref|YP_002984242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
 gi|187728150|gb|ACD29314.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
 gi|240867910|gb|ACS65570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
          Length = 916

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 264/580 (45%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LA+    + V                  IL +  G + G  
Sbjct: 330 AIQKDNVERGLAESEERYRLAISNLHEGVVIISPDGVVQAANASAERILRVRPGQLVGRN 389

Query: 450 R-NWLPYIHINDRDNFRTILD---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-N 504
           R + +  +         + +      +          + +     +  W+   I P+  +
Sbjct: 390 RLDPIQRVVDEYGKEIGSTMMPSGQVLRTGEPIFGRVYGLLLKTGELMWVRQNIIPIRRH 449

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +       +    DIT+ K++ + +   A  D LTG+ NR  F+  L + ++ +  D++ 
Sbjct: 450 AEPTPSSVMLSFADITDIKRAEQRLRHLAAHDALTGLTNRSFFIAHLESAIESA-RDESR 508

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 509 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQR 568

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +IA  A  + +++  P + +     +  SIG A +    I+ S++L++A+ AMY A
Sbjct: 569 VEGKRIALLAERLLQAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 628

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A EN+EL LVY P   L    IVG EAL+
Sbjct: 629 KQNGRNRAQFYTAELNARLQRRYMLENALRDARENNELQLVYQPKYDLASHRIVGAEALL 688

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G IS  EF+ +AEE  +I  I  ++L R     + W +        + +N+++
Sbjct: 689 RWNSAKLGAISPVEFIPVAEETGLIVPIGAWVLRRACEQAVIWYEALGY-DFRMAVNLSA 747

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  ++ +   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 748 RQFQAGDVVPMIEQTLADSGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 807

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S +TG       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 808 FGTGYSSLSYLQRFPISNVKIDRSFITGIPHDPDSVALTEAIVAMARALGMTVTAEGVED 867

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+      +LL+    +V
Sbjct: 868 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLSVV 907



 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 7/122 (5%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           S D V    +    V   P  A +LG      + G        IH +D       L   V
Sbjct: 49  SSDAVLLT-VDGRLVQANPAAARLLGAQDPAQLAG--LQLAGLIHPDDVAQVVPRLAGMV 105

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E R+  AD     +           G     + +   ++  + +LE     
Sbjct: 106 SSGVSAQPVEHRLVRADYTHVLVASEAAA-CEHEGQPAVMLVLREAVS--RHALERHAVQ 162

Query: 533 AF 534
           A 
Sbjct: 163 AR 164


>gi|291288785|ref|YP_003505601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Denitrovibrio acetiphilus DSM 12809]
 gi|290885945|gb|ADD69645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Denitrovibrio acetiphilus DSM 12809]
          Length = 1019

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 144/565 (25%), Positives = 272/565 (48%), Gaps = 15/565 (2%)

Query: 399  GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
             I +  E+  LA      + D +       + V+     ++  G +   + G   R + P
Sbjct: 460  EIKNAEEKTLLASKVFDNTLDGIMIVKKDGEIVSCNKAFSSTTGYSEEEIIGKNARMFRP 519

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             IH +    F   L   + ++ G+   E   +  D +    ++    + NS G+I  +I 
Sbjct: 520  GIHPD---YFYEDLWKNL-FKYGKWDGEVWQKKKDGEIFPTLMSCSSIRNSEGEITEFIS 575

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            + +DITEQK+  E I   A  D+LTG+PNR  F D+L   +            +M +D+D
Sbjct: 576  VLHDITEQKRYEEQIKYQATHDSLTGLPNRIYFTDKLAEQI--PKNHLPSCIGIMFLDLD 633

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++K +ND LG   GD VL  +  RI   +  PD+ AR SG+ F +      N   + +  
Sbjct: 634  RFKNLNDTLGHTTGDKVLEIIAERIRNTVHGPDMAARFSGDEFTVFFTGVKNQDALIEMV 693

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              + K I+ P+++   E+ +  S G + +  + +T+SE++KNAE+AMY AK  G N+++ 
Sbjct: 694  KNVTKRISEPLHIQGYELFIQTSAGISVYPDNGLTASELIKNAEIAMYQAKQTGKNNIQL 753

Query: 695  FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            +         DR +++  L  A+EN E  L Y P I L  + ++G+EAL++W +P+ G I
Sbjct: 754  YTDGLDETIRDRFIMESKLNRAIENDEFSLHYQPKIDLATDSVMGMEALLRWHNPELGFI 813

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               +F+ ++E+  +I  I  ++++R   D      +     + I IN++ +  +   L E
Sbjct: 814  PPDKFIPLSEDSGLILPIGEWVMKRALSDTAKLHKE-GFADLKIAINLSLRQFMKKGLVE 872

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++  I     +   ++   +E++   +      ++  +  + I   +DDFGT  S + Y
Sbjct: 873  FVEKSIETAGLNNRNVEFEITENIFTEDLSTISRIMNEISNLNIKFAIDDFGTGYSSIGY 932

Query: 873  LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L  +P  T+K + S ++   S     +I+ S+I M+K++   ++A+    E  +  L  M
Sbjct: 933  LKKMPISTLKIDRSYISKIDSDTDSESIVSSVILMSKSLGLNVVAEGAETESQVNMLKDM 992

Query: 931  GCDYIQDSHVASPLGFNSILKLLKE 955
            GC  +Q  +   P+ ++  L+ ++ 
Sbjct: 993  GCSIVQGYYYGKPMPYDEFLEFVRN 1017



 Score = 39.5 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +  WD   +       +  + G  S +M G   + +  I      + +  L++       
Sbjct: 361 IATWDRNGNITLFNNALEKLSGYDSSNMLGKHLSHIYNIFP----HAKVALENNDTDVSS 416

Query: 478 RLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             Q+E  +   +  +  +++  I  +  S+      I    DITE K + E  L
Sbjct: 417 SAQFESALTHRESGENSYILWNITDIF-SDTKYAGTILQGIDITEIKNAEEKTL 469


>gi|120602704|ref|YP_967104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris DP4]
 gi|120562933|gb|ABM28677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
          Length = 997

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 148/566 (26%), Positives = 272/566 (48%), Gaps = 8/566 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q +    +R       + + ++        +   P +A + G +       + +
Sbjct: 417 ERRSVEQALRRAEQRYRGIFENAVEGIFQIAPDGMLLRGNPAMAEMFGYSDIESLREVGS 476

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +          +    +        +EFR R  +++  W+ +  R +++++   L 
Sbjct: 477 MAEAMFAE--ATSSDVFFHQLEMTGNVSGFEFRARHREDRELWLRVNARRVADAHDATLF 534

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G   DIT   +S + +   A+ D LTG+PNR  FLD L   +  +A   +   TV+ +
Sbjct: 535 YEGFLTDITISHRSRQQLAHQAYHDPLTGLPNRLLFLDHLQLAMQRAARRADAMFTVLYL 594

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  +GD +L  +   +   ++  D +AR  G+ F I+L    N     
Sbjct: 595 DLDRFKIINDSLGHGIGDALLREVACTLRRCVRDVDTVARFGGDEFAILLEDTGNCAGAV 654

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +R+S+A P+N+   E+  TASIG    T   +T  ++L++A+ AMY AK  G + 
Sbjct: 655 RIARRIRESLAQPVNIAGHEVFTTASIGIVLQTRDYLTPEDILRDADTAMYRAKEMGKSR 714

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + F           + ++ DL  AVE  EL L YHPI+ L D  + G E+L++W     
Sbjct: 715 FKVFNARMREDTLRLMALETDLRFAVERGELSLRYHPIVDLEDGSLHGFESLLRWRRGN- 773

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            ++S +EF+ +AE+  +I  I  F++E + R + +W+D A    I + +NI+ + L+   
Sbjct: 774 EDVSPAEFIPVAEDAGLIADIGAFVIEDVCRQVAAWQDTACDCGI-VHVNISGRQLMRPG 832

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +  ++ +   + S ++   +ESV++ +   +  ++ +LR++GI L LDDFGT  S 
Sbjct: 833 FAQMVDEILRRHGIAGSCLRFEVTESVLVRHGTLAVSVMHQLRELGIRLCLDDFGTGYSS 892

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P +++K + S + G    E   A++R I+ +  ++   ++A+ +  E     L
Sbjct: 893 LGYLRRLPVESLKIDRSFVWGMEKDEAGRALVRGILTLGLHLGLEVVAEGVETEEQAVLL 952

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGC Y Q    A PL    +   +
Sbjct: 953 RDMGCRYGQGFLYAKPLLSERVPPFV 978



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 27/204 (13%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL-------GSGDIVWDWDIVRDRVTT 430
           +  ++GF         G     +         A+        G G+ +         + +
Sbjct: 227 LARVMGFMAADLARFVGGLEAEVKRSTGELRTALGELSAIVGGMGEGLLVVSAEGLVLRS 286

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRA 487
               A++  L        +   LP    +D   R      L S       R   E+    
Sbjct: 287 NEAFASLFCLEPFGCPVALDALLPLSGQDDSGLRGVLEDALQSMARGEAARHSGEYPFIC 346

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D    W+   I P++   G     + +  D+T + ++       A +D           
Sbjct: 347 GDGVRRWVGCTIEPVT-IGGKPC-IVCLVQDVTARNEAQ-----QALRDA---------- 389

Query: 548 LDRLTTILDLSATDDNLRPTVMVI 571
            D+L   +     D       +++
Sbjct: 390 YDKLEAEVASRTRDLRRANAQLLL 413


>gi|226939565|ref|YP_002794638.1| hypothetical protein LHK_00636 [Laribacter hongkongensis HLHK9]
 gi|226714491|gb|ACO73629.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 759

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 143/573 (24%), Positives = 267/573 (46%), Gaps = 16/573 (2%)

Query: 388 QHVLATGYFSQGIFSDGER-QSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + V+           + ER   LA      S + +   D     +T  P    I G    
Sbjct: 181 ERVIVGVGLDISARLETERTLQLAATVFENSSEGILLTDADGTLITVNPAFTRITGYTEE 240

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G         H+  +     ++ S   +  G  Q E   R  D + + + + +  + 
Sbjct: 241 QALGRRSRMFRTDHVG-QATNMQMMQSLAEH--GHWQGEMFDRHRDGRLYPVWLSLSAVY 297

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +  +  Y+G+  DI+ +K + + ++  A  D LT + NR +   +L  I         
Sbjct: 298 DED-RVSNYVGVFTDISRRKAAEDRLVFLASHDPLTRLLNRDALFRKLEDICLSGIEQ-- 354

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ ID+D++K IND  G A GD++L  +  R+  ++    +LAR  G+ F ++L  
Sbjct: 355 -SFAVLFIDLDRFKLINDSFGHATGDNLLRIVAARLSFVVGSNALLARQGGDEFTLLLED 413

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 + D A  +   ++ PI L  +E+ +TASIG A        ++ +L++A+ A+Y 
Sbjct: 414 TGQRTAVIDMANRLLDELSQPITLENQELHITASIGIALAPEHGKDAATLLRHADTALYR 473

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F  +     + R+ ++  L  A+  ++L L Y P I    + +VG+E L
Sbjct: 474 AKDAGKNTFAFFTHTLHGLSNQRLALENALRHALPRNQLTLAYQPQIDPHRQRLVGVEVL 533

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +S + F+ +AEE  +I  I  ++LE   R + +W          + +N++
Sbjct: 534 LRWHHPELGQVSPATFIPLAEETGLILPIGRWVLETACRQLAAWDTAGFSVG-HVAVNLS 592

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +    D  L   ++A++S +  +  R++L  +ES ++ NP  +  L+  L+++G+ L++D
Sbjct: 593 AHQFNDPGLTHHLKAVLSDSGLAARRLELEVTESTLINNPTAAIALMTELKELGVRLSID 652

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+ L   P DT+K + + ++G       +AI  +II MAK +  +++A+ + 
Sbjct: 653 DFGTGYSSLAQLKRFPLDTLKIDRTFVSGIPADASDLAITEAIIAMAKKLSLSVVAEGVE 712

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                  L R G + IQ    + PL   ++   
Sbjct: 713 TADQRDFLARCGSELIQGYFYSPPLAAEALHSF 745


>gi|307823551|ref|ZP_07653780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307735536|gb|EFO06384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1218

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/562 (24%), Positives = 260/562 (46%), Gaps = 19/562 (3%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            R +     + + +   D  +  +        I G ++    G     L   + +    F 
Sbjct: 660  RIAAIAFETQEAMMITDTHQVILKVNQAFVRITGYSAEEAIGQTPALLKSGYQD--AKFY 717

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +   +  R G  Q E   R      +   I I  ++N+ G+++ Y+G  +DI++ KK+
Sbjct: 718  QTMWESL-VRDGYWQSEIWNRRKCGDVYPERITITAVTNAEGNVVNYVGTFDDISQHKKA 776

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E I    F D+LT +PNR+  L+RL   +++   D   +  +M++D+D++K IND LG 
Sbjct: 777  EETIHDLVFYDSLTKLPNRRLLLERLKHSIEVERRDGK-QLALMMLDLDRFKVINDSLGY 835

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARL---------SGNRFGIILISENNSLKIADFAIA 636
              GD++L  +  RI   L+  DI+ARL          G+ F ++L    ++   A  A  
Sbjct: 836  LAGDELLQQVATRIATRLRKVDIVARLRKVDLLAHLGGDEFIMLLEDITHTEDAARVAEQ 895

Query: 637  MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   ++ P  L    EI +TAS+G + +         ++  A+ A+  AK  G      +
Sbjct: 896  VIAILSKPFYLSQGDEIHITASVGISLYPQHGDNPDTLISYADAALNKAKAEGRGCFAYY 955

Query: 696  RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      R+ ++  L  A+E  EL + Y P + ++   I+G EAL++W  P  G I+
Sbjct: 956  SEDLTLAARQRIALEARLRKAIEQQELRVFYQPQVDIVTGRIIGAEALVRWLDPIEGLIA 1015

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AEE  +I  I  ++L    R    W D    PP+ + +N+++     +++   
Sbjct: 1016 PIHFIPLAEETGLILEIGAWVLRETCRQGRQWLDAGL-PPLTLAVNVSAHQFRRSDIGAL 1074

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  ++++T +   +++L  +ES +M +  +   LL  LR  G+   +DDFGT  S L+YL
Sbjct: 1075 VTTVLNETGFPAEQLELEMTESGLMESQSKVMGLLNDLRSQGVRFAIDDFGTGYSSLAYL 1134

Query: 874  GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             + P D++K + S +      +  + I  +II M   +   ++A+ +     +  L   G
Sbjct: 1135 KHFPLDSLKIDKSFIDDIPHLQDDMEIAATIIAMGHMLGFKVLAEGVETVEQLAFLQDKG 1194

Query: 932  CDYIQDSHVASPLGFNSILKLL 953
            CD  Q    + P+  +  ++LL
Sbjct: 1195 CDAYQGYLKSKPVPADEFVRLL 1216



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 7/174 (4%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            +     A    +   +  +   V+  +       Q +     R       + D +   +
Sbjct: 494 GSTKTVLANASSIKQSLGSVHLVVLYDINERKKAEQKVLEREARYRAVTYSASDAIITTN 553

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-- 480
              +         TI G     + G     L  +     D     ++  +      +   
Sbjct: 554 SAGNITGWNRGAETIFGYTETEVSGQPLTLL--MPPRYHDPHLIGMERVLSGGVSHINDK 611

Query: 481 -YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             E      D     + + +     S G      GI  DITE+K++   +   A
Sbjct: 612 TVELAGLRKDGSEFPLELSLAKWEASEG--WFVTGIIRDITERKQAEADLRIAA 663



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 53/210 (25%), Gaps = 11/210 (5%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
             +       I  I       +      ++  +  G    +  +G +  +          
Sbjct: 335 YFLIGIYYAMIGSIQSLTRSARVFAGGDMRERINLGTRDELRQVGDSFNEMADGFNALLA 394

Query: 399 GIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               D     R    +  S   +   D  ++     P      G     +      W   
Sbjct: 395 ARLEDKASETRLRSIIDASPVPMVLNDDQQNITFLNPAFIQTFGYTLEDIPTLTDWWAKA 454

Query: 456 I-HINDRDNFRTILDSFVG---YRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                 R+       + +    +   +    E  +R        ++     +  S G + 
Sbjct: 455 SPDPEYREWMAATWQTTLETVLHDDSQFNPVELNIRCHSGSTKTVLANASSIKQSLGSVH 514

Query: 511 RYIGIANDITEQKKSLEGI-LCNAFQDNLT 539
             +    DI E+KK+ + +    A    +T
Sbjct: 515 LVV--LYDINERKKAEQKVLEREARYRAVT 542


>gi|120554062|ref|YP_958413.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120323911|gb|ABM18226.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 819

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 150/576 (26%), Positives = 270/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + ++      +   ++  + S A+  S   V   D            + + G +   +
Sbjct: 240 MRERLIDDVTRRERDEAEIRKFSKAIDQSPSSVLICDRQWRIEYANRKFSQLTGNSPSEI 299

Query: 446 HGPIRNWLPYIHIN-DRDNFRTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            G   +    I    D    R +         R G  Q E      + + +W  + + P+
Sbjct: 300 IGKHPS--SLIDPGVDSHEARQLWKSIRLQVQRVGVWQGEVNSTRKNGERYWEQLVVTPI 357

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++NG+   Y+ +  DI+ +K+  + +L  A  D LTG+PNR   LDRL   L  +  D+
Sbjct: 358 KDNNGESTGYLILGEDISIRKRYEQQLLRQANYDILTGLPNRMLALDRLKLALAQARRDE 417

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           + +  VM +D+D +K IND LG   GD +L+   RRI   L+    +ARL G+ F ++L 
Sbjct: 418 S-KVGVMFLDLDNFKHINDTLGHDAGDTLLIEAARRISSCLRGTSTVARLGGDEFLVVLP 476

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N     +  A  + K+ A P  L  +E+ VT SIG A++      S  +L++A+ AMY
Sbjct: 477 GLNGPDASSQVAERILKTFAPPFMLSGQEVFVTTSIGIATFPDDSDNSGTLLQHADAAMY 536

Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AKH+G +    F         +R+ ++  +  A+E  E  L + PI+      +V  EA
Sbjct: 537 EAKHKGKSAYARFTPEMSEVSHERLQMESHMRKALELGEFELYFQPIVDTASGGLVAAEA 596

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W++P  G +    F+ +AEE  +I  I  ++++   +    W+       I I +N+
Sbjct: 597 LLRWNNPAMGMVMPDRFIPLAEETGLIIPIGEWVVKEACQAAYCWQAMTGRE-ISIAVNV 655

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D    + +   ++ +   P  ++L  +E +++ N   +  +L +L K+GI L++
Sbjct: 656 SPRQFRDPGFTDAIMRALNDSNLRPELLELEITERLILDNSIETADILKQLDKVGIRLSV 715

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   PFDT+K + S +       +  +++R+II MA ++   ++A+ +
Sbjct: 716 DDFGTGYSALSYLKSYPFDTLKIDKSFVQDVLKENEDASLVRAIINMAHSLGLKVVAEGV 775

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             E     L    CDY Q    + PL     +  L+
Sbjct: 776 EEEDLTHFLKAEHCDYSQGYFYSRPLPEQDFIHWLE 811


>gi|16127324|ref|NP_421888.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|221236127|ref|YP_002518564.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000]
 gi|13424748|gb|AAK25056.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|220965300|gb|ACL96656.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000]
          Length = 748

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/620 (22%), Positives = 270/620 (43%), Gaps = 19/620 (3%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
             L       L    +  L   I+  A     V  V+ +     +             ++
Sbjct: 87  MALADFTTDSLSYRASDLLRGFIVTEAGRYLGVGTVLALLQAANETNRRGVEALALAKAE 146

Query: 404 GERQSL----AVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            ER        V     +V+         V         LG     + G        IH 
Sbjct: 147 VERAQTFMTGIVEAMPAMVFVKRADDHSYVLLNRAGEKTLGFKRDEVIGKTDAD---IHD 203

Query: 459 NDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +    +R    + +     R+  E  V   D     +  +   + N+ G     +G++ 
Sbjct: 204 AELAALYRERDRAVLDSGEVRVIEEDHVPRKDGGMAILRTKKIALLNAEGRAEYLLGVSE 263

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI E+K++   I   A  D LT +PNR  F   L   L   +   +    V  +D+D++K
Sbjct: 264 DIAERKRAEAQIARLAHYDPLTDLPNRVLFQKSLGEALARRSRKGDA-LAVHFVDLDRFK 322

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG  +GD +L     R+   ++  D +ARL G+ F I+    ++S      A  +
Sbjct: 323 TVNDTLGHPLGDALLKIAAERLRGCVREGDTVARLGGDEFAIVQTGLDDSNGATRLAARI 382

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
            +++A P +L    + + AS+G +   +    + E+LK A++A+Y AK  G      F  
Sbjct: 383 VEAMAAPFDLQGHHVVIGASVGVSLAPTDGDDADELLKKADMALYRAKADGRGAYHFFER 442

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R  ++ DL  A++  E  L Y P+  L DE + G EAL++W HP+ G +S +
Sbjct: 443 AMDEQLQARRALELDLRRALQAGEFELFYQPLYHLGDERVTGCEALLRWRHPERGMVSPA 502

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE+ +I  +  ++L R   +  +W +      + + +N++     D  L   + 
Sbjct: 503 DFIPLAEEIGLIVQLGEWVLRRACAEAANWPEH-----VRLAVNLSPAQFRDRGLVRTVV 557

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + ++ +     R++L  +ESV++ + + +  +L  L+ +G+ +++DDFGT  S LSYL  
Sbjct: 558 SALAASGLPAQRLELEITESVLLQDSQANMTMLHDLKALGVRISMDDFGTGYSSLSYLRS 617

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + + +         +AI+++++ +  ++     A+ +  +  +  L + GC 
Sbjct: 618 FPFDKIKIDQTFVRDILHDSDAMAIIKAVLDLGASMGVVTTAEGVETQAQLDALRQQGCA 677

Query: 934 YIQDSHVASPLGFNSILKLL 953
            IQ   ++ P   + I K+L
Sbjct: 678 EIQGYFISRPAPASEIAKML 697


>gi|83313253|ref|YP_423517.1| hypothetical protein amb4154 [Magnetospirillum magneticum AMB-1]
 gi|82948094|dbj|BAE52958.1| Hypothetical 918 kDa protein Y4LL [Magnetospirillum magneticum
           AMB-1]
          Length = 833

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 140/596 (23%), Positives = 266/596 (44%), Gaps = 10/596 (1%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           L    + +     +  I H +     ++  + +  E  +  +    D++   D     + 
Sbjct: 237 LSLASMELGGQRLYVAIGHDITLRKANEAELVNQKEWLTTLINALPDLICFKDGKGRWLV 296

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRA 487
                  ++GL+     G     L  +  N ++   T    D         L YE  +  
Sbjct: 297 ANQFYLDLVGLSGVDYVGRTGPELARLSHNFQEFLTTAKETDERAWKDGKPLSYEKAMET 356

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                    +   P+   +G     + +  D+TE+K +   I   A  D LT +PNR  F
Sbjct: 357 PSRGTKVFDMLKIPLFKPDGRRSGLVLVGRDVTERKLAAARIQHLAHHDALTELPNRVLF 416

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL   L  +      +  +M +D+DK+K IND LG  VGD +L ++ +R+   ++  D
Sbjct: 417 QERLRQSLAQAKRS-GWKLALMFLDLDKFKDINDTLGHHVGDLLLRAVAKRLTRCVRETD 475

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL G+ F +IL + ++    +  A ++   IA P  L E E+  + SIG   +    
Sbjct: 476 TVARLGGDEFAVILTNLDDLEGASRVAESIIAGIADPFGLDEHEVRTSTSIGITLYPDDS 535

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
           I + ++LKNA+LAM+ +K  G N+   +        R    I+ DL  A+   +L L Y 
Sbjct: 536 IDADQLLKNADLAMFRSKAEGRNNYHFYVAQMDAEVRARKLIENDLRQALGTEQLELHYQ 595

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++ +    IVG EAL++W+HP  G +   EF+ I E   +I  +  ++L R  +    W
Sbjct: 596 PLVEMSSRRIVGCEALLRWNHPTRGWVPPGEFIPIIERSDLIGPLGRWILHRACQQGREW 655

Query: 786 RDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +      P+ I +N++         +   +  ++ +T ++P +++L  +E + M N + +
Sbjct: 656 QRDGL-EPMKIAVNLSPAQFKQTQSIIAMVADILDQTGFAPDQLQLEITEGIAMQNVDAT 714

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
             +L  LR +G+ +++DDFGT  S L+YL   P D +K + S +          A++ +I
Sbjct: 715 IEVLQSLRAMGVVISIDDFGTGYSSLNYLKRFPVDKLKIDRSFVVDIGLHPDNAAVVEAI 774

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           + +  ++ T +  + I  +  +  L     D  Q  + +  +  +    L++ + P
Sbjct: 775 VNLGHSLRTRVNVEGIETKEQLDFLQAHKVDEAQGFYFSKAVPADQFAHLVRTKSP 830



 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 19/167 (11%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              +    V  +      + Q        ++            V  + D +  +      
Sbjct: 121 TGLIQIFDVTSMASRETLLRQQARTMEALAENYRLSELHNRAIVDNTADAIVTFGEDGGI 180

Query: 428 VTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            T  P    I G A   + G   + L    I  +           F+ +R      E   
Sbjct: 181 GTYNPSAERIFGYAPPEIVGKQISLLIPELIKPD----------PFLDHRT-----EVVG 225

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    + + +  M    G    Y+ I +DIT +K +   ++  
Sbjct: 226 VRKTRAHFPLELSLASM--ELGGQRLYVAIGHDITLRKANEAELVNQ 270


>gi|228955548|ref|ZP_04117551.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804110|gb|EEM50726.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 536

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 136/535 (25%), Positives = 255/535 (47%), Gaps = 11/535 (2%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            + +       T+LG  +  +      +   I+  D +                +  E R
Sbjct: 3   GNFLKVNNAGTTLLGYQTNELLNQP--YYSLIYEEDLEEMINAFHRVKKGY--SISLEIR 58

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
               +   +++ +   P+      I     +  DITE K+  E I   A+ D LT + NR
Sbjct: 59  AYHKNRDIYYLHVTAVPIFLKE-KISGVYLMIKDITESKQQQEQINFLAYHDTLTELANR 117

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           ++F   L   +  +         VM +D+D++K IND LG  VGD +L+++ +R+  +  
Sbjct: 118 RAFHQHLEQAIARAKISKK-PFAVMFLDLDRFKVINDTLGHRVGDLLLIAVAKRLERIAT 176

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               LARL+G+ F I++ +      +   A  +  ++  P  +  + + ++ SIG A + 
Sbjct: 177 SNMKLARLAGDEFTILIENYKKKPDVQKIADRIVAAMNEPFEIENQHLQISPSIGIAIYP 236

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYL 722
            +   +  +L++A++AMY AK++G N    +    ++       I++DL +A+ N E YL
Sbjct: 237 EAGEDALSILQHADMAMYEAKNKGKNGSSLYTKELYKKMERKARIEKDLPIALVNKEFYL 296

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           VY P I     +I+G EALI+W HP  G+IS  EF+ I EE   +  +  ++L+     +
Sbjct: 297 VYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFIPIVEETPQVVPLGHWVLQEACLQL 356

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W        + I +N+++K+   ++L E +  +++     P  + L  +E + M + +
Sbjct: 357 KIWH-TFGYQNLKISVNLSAKEFRQDQLIESISQILNDVQVDPKYVTLELTERIAMIDEK 415

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILR 900
            + L L +L++ GI  ++DDFGT  S L+YL   P DT+K             +  AI+ 
Sbjct: 416 ETLLRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVS 475

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  + + PL  N  +K L++
Sbjct: 476 TILSLANTLNLSVVAEGIETEKQLKFLQKHNCKYMQGYYFSKPLTSNQFIKFLQK 530


>gi|329938501|ref|ZP_08287926.1| sensory box/GGDEF family protein [Streptomyces griseoaurantiacus
           M045]
 gi|329302474|gb|EGG46365.1| sensory box/GGDEF family protein [Streptomyces griseoaurantiacus
           M045]
          Length = 715

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 136/579 (23%), Positives = 251/579 (43%), Gaps = 14/579 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  + A G  +Q + +   R      G+   +   D+  + +     +  + G + 
Sbjct: 135 EAISAAALKAQGVVAQALHASEARFRAVFEGAAIGISIADLEGNVLEVNGALLRMFGGSE 194

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G +           H  D      +    V   R     E      D    W  + +  +
Sbjct: 195 GLLRDRNVAEWS--HPEDAPQVWRLYQELVRGEREHYHVEKPFYRPDGTVLWTNLTVSLL 252

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +++G     + +  D TE++     +   A  D LTG+PNR  F +RL   L      +
Sbjct: 253 RDADGAPQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALS---AGE 309

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621
             R  +  +D+D +K IND LG A GD +LV +  R+        +++ARL G+ F  + 
Sbjct: 310 GQRFGLCYLDLDGFKTINDSLGHAAGDRLLVEVADRLQGCATAPGEMVARLGGDEFVALT 369

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +    + D A  +  +++ P+ +  RE+ V  SIG     + +   +E+L++A++ M
Sbjct: 370 TGPDTERGVDDLADRIMNALSGPVRIDGRELLVRGSIGVVEGPAGERGPAEVLRSADITM 429

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  GGN  E     +         +   L  A++  E ++ Y P++RL D E+ G E
Sbjct: 430 YRAKSAGGNRYELADPEADARAITRHGLTTALPAALDRGEFFIEYQPLVRLDDGEVHGAE 489

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILI 798
           AL++W HP+ G +    F+ +AE   +I  +  ++LE   R    W+ Q     P+ + +
Sbjct: 490 ALVRWLHPQHGVLGPDRFIGLAEHTGLIVPLGRWVLEESVRQARDWQRQHGEDFPLRVNV 549

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L    L      ++ +T   P  + L  +ES ++G  +     L RL ++G+ +
Sbjct: 550 NLSPCQLTHPGLVSDTVEILERTGVEPEALCLEVTESALIGADDDLLKPLRRLAEMGVDI 609

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTI 913
            LDDFGT  S L+ L  +P   +K + S   G          + I+  I+ +A +++ T+
Sbjct: 610 ALDDFGTGYSNLANLRRLPVSILKLDRSFTQGMQQYPADPVDLKIVEGIVTLAHSLDLTV 669

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             + +      ++L  +GCD  Q  + A P   + + +L
Sbjct: 670 TVEGVETGAQAEQLRVLGCDTAQGWYYARPGPPDRLREL 708


>gi|302186773|ref|ZP_07263446.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 639

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 149/624 (23%), Positives = 276/624 (44%), Gaps = 19/624 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394
           +  + + +        L   +       + Q  +  G  L+  ++ F     + A     
Sbjct: 14  LYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIIGGE 73

Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPS 133

Query: 451 NWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    H           L S      G+   E   R    + +     IR +   +G  
Sbjct: 134 KFKSGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRSIKGEDGQA 188

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++
Sbjct: 189 RHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALL 247

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D ++ IND LG  +GD+VL +   R+  L      +ARL G+ F +++ +  + + 
Sbjct: 248 VVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVARLGGDEFALLVKNCTHMVH 307

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +  +   P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK+ G 
Sbjct: 308 AAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKNDGR 367

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     +    RV +  +L  A+E  EL + Y P+  L+   I  +EAL++W HP
Sbjct: 368 EGFALYTEELTAHAQQRVQLASELRQAIEQDELRVFYQPVYDLVSGRICAVEALVRWQHP 427

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  +F+ IAE+  +I  I+ ++L    R + +W          + +N++S+    
Sbjct: 428 TRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLADGVSIA-SVAVNVSSRLFSR 486

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  
Sbjct: 487 GDVDRQVAKVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGY 546

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I       
Sbjct: 547 SSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRTVIALASSLGMRVLAEGIEHASQAS 606

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q    A P+   SI
Sbjct: 607 FLLSNGCELGQGYWFARPMAAQSI 630


>gi|332529256|ref|ZP_08405219.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
            19624]
 gi|332041266|gb|EGI77629.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
            19624]
          Length = 1045

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 149/585 (25%), Positives = 265/585 (45%), Gaps = 25/585 (4%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                +  S+AV  +   VW WD    R+        +LG ASGS+    R  +  IH  D
Sbjct: 462  RDQQQLLSIAVESAALGVWQWDFASGRLEVNERFYALLGYASGSLELTARTLVDLIHPED 521

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDI 519
             D     L + +   R  +  + RVR AD ++ WM+     +  +  G   R  G+  D+
Sbjct: 522  LDAMSRALRANLRDSRRPVHVQMRVRHADGRWRWMLFSGTVVSRDGRGRAARMAGVCYDV 581

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            + QK+  E +  +A  D+LT +PNR   L R+   LD +  +      V+ +D D++K++
Sbjct: 582  SAQKELEEQLRQSARIDSLTHLPNRAELLRRIRAALDRARREPGYGFAVLFMDFDRFKQV 641

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPD------------------ILARLSGNRFGIIL 621
            ND LG + GD++L  +  R+ E L+  D                  + AR+ G+ F ++L
Sbjct: 642  NDTLGHSAGDELLRQIAGRLQESLRAGDAFVQASDIDVLTGQPAQQLAARIGGDEFVVLL 701

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
             +  + L     A  + +++A P  +    ++ TASIG  + T        +L++A++AM
Sbjct: 702  DNIRSDLDAKVVATRLLQTLAEPYEIGGHRVSSTASIGIVTPTHMADDPDSVLRDADIAM 761

Query: 682  YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK +G    E F         D   ++ DL  A+   E+ +VY P+I L    +  +E
Sbjct: 762  YEAKRQGRGRYELFEPSLRKRVHDDAELENDLRQALARDEIRVVYQPLIDLATGRLASVE 821

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILI 798
            AL +W HPK G IS   F+ +AE   +I  +   +L     +++  R       P  + +
Sbjct: 822  ALARWHHPKRGLISPLAFIPVAEGSGLIGPLGERVLRTACHELVRLRQMLGDRAPQTVSV 881

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++   L   +    +  L+  T   P  + L  +ES+   + E  + +L  +  +G++L
Sbjct: 882  NVSRAQLRQTDFVARLSELLRSTGIGPEALMLEVTESLAAQD-EGVQSVLREVSALGVAL 940

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            +LDDFGT  S LS L  +P + VK + S ++ + +      ++ + I MAK +    +A+
Sbjct: 941  SLDDFGTGYSSLSCLHALPVNQVKVDRSFVSEALDSNYHRVMIEATIRMAKALHLQTVAE 1000

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             I        +  +G +  Q    + PL    +     ++    +
Sbjct: 1001 GIETLEQAALMQYLGINKGQGYLYSHPLNAGELEAWAGQQAAHTR 1045



 Score = 61.1 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 5/132 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +L    + + V   D     +          GL    + G     L     +D +    
Sbjct: 222 LALVAERTANWVAMLDGAGRVLWCNDAFLRGKGLPREQVIGVQGVLLGQ--ADDGEAREQ 279

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L   +   R  ++ E   RAAD +  W+ +  +P+  + G+      +A DITE     
Sbjct: 280 ALLEELRQGR-PVRTEILHRAADGREVWLDVDYQPIRGAEGEPQGCTLVATDITE--AQS 336

Query: 527 EGILCNAFQDNL 538
           + +   A  D +
Sbjct: 337 QRLRLRALIDAV 348



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 13/138 (9%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-- 456
              S   R    +      V   D+    +      A +LGL   ++ G +      +  
Sbjct: 333 EAQSQRLRLRALIDAVPVGVVLQDLEGRVLDCNVLAAEMLGLPVDTLVGRVGLSAQGVTT 392

Query: 457 -------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                  +  D    +  L +    R   +     +        W++   +P+ ++ G +
Sbjct: 393 VRADMTPYPEDERPTQRTLRTGQPLRAESVG----IVLPGAPVRWLLTNTQPLRDAAGHM 448

Query: 510 LRYIGIANDITEQKKSLE 527
                   D+TEQ+   +
Sbjct: 449 TGVASSVIDVTEQRDQQQ 466


>gi|94270288|ref|ZP_01291701.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93450865|gb|EAT01886.1| PAS:GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 941

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/587 (23%), Positives = 248/587 (42%), Gaps = 17/587 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ +++              E  +  +    +     D     V+     A   G  
Sbjct: 348 MLASLAEYLAPLLAARLESRRAEELVARVLETIDEGFIIIDHEFKIVSANRAYAESAGYP 407

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIR 498
              + G     +   H  D+  +    D  V +                A  +  ++  +
Sbjct: 408 LAEVIGRHCYQVS--HQIDQPCYLNGEDCAVQHVFNTGEPHTAVHTHYTAAGEPLYVETK 465

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             P+  +  G + R I +  DIT++K   + I   AF D LT +PNR+ F DRL      
Sbjct: 466 AYPLERDDLGTVRRAIEVVTDITDKKNREQEIHRLAFYDPLTRLPNRRLFFDRLEQAFSA 525

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           SA        V+ +D+D +K +ND  G  VGD +L     R+   ++  D ++R  G+ F
Sbjct: 526 SARSGQ-HGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAERLQVAVRANDTISRQGGDEF 584

Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            ++L + +     A       A  +R ++  P +L   E  +  SIG + +      + E
Sbjct: 585 MVLLNNLSPERHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGLSLFLGHDTPADE 644

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           + K A+ AMY AKH G N V  F             +  DL  A+   +  L Y P    
Sbjct: 645 LFKRADAAMYQAKHAGRNQVRFFDPEMQAELEQASALVVDLRQAIWQGQFQLHYQPQTS- 703

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EAL++W HP+ G +S  +F+ +AEE  +I  I  ++L+     + +W D   
Sbjct: 704 NDGRIIGAEALLRWRHPERGPVSPMQFIPLAEESGLILPIGHWVLQEACGQLAAWADLPA 763

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++++     E    ++ +++ T   P  +KL  +ES+VM     +   +  
Sbjct: 764 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMQE 823

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR +GI  ++DDFGT  S L+ L  +P + +K + + +          AI+ +II M + 
Sbjct: 824 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 883

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  +IA+ +  +  +  L R GCD  Q    + P+       LL  
Sbjct: 884 LDIQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 930


>gi|257094133|ref|YP_003167774.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257046657|gb|ACV35845.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1006

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 138/560 (24%), Positives = 248/560 (44%), Gaps = 14/560 (2%)

Query: 405  ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            ER +     S   ++  D     +        I G A+    G     L     +   +F
Sbjct: 452  ERIAATAFESQQGMFITDANAVILRVNQAFTDITGYAADECIGQTPKLLSSGRHD--ASF 509

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
               +   +  R G  Q E   R  +       + I  + + +G +  Y+    D++  K 
Sbjct: 510  YAAMRESIE-RNGVWQGEIWNRRKNGDVFPEWLTISSVRDGDGVVTHYVSALTDMSAHKA 568

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            + E I   AF D LTG+PNR+   DRL   +  S   +  +  ++ ID+D +K +ND LG
Sbjct: 569  AQEEIRHLAFYDALTGLPNRRLLHDRLRVAIASSVRSER-QGALLFIDLDNFKTLNDTLG 627

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMRK 639
              +GD +L  + +R+   ++  D +ARL G+ F ++L +     + A          + K
Sbjct: 628  HDMGDRLLQQVGQRLSSSVREGDTVARLGGDEFVVMLENLGERPEEAAGQSRIVGEKIIK 687

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +  P +L   +   T S+G   +   ++   E++K A+LAMY AK  G N +  F    
Sbjct: 688  LLNRPYDLSGHDYHNTPSVGITLFGGQQVGIDELMKRADLAMYEAKASGRNALRFFDPRM 747

Query: 700  FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                     I++DL  AV     +L Y P +     +++G EAL++W H + G +S +EF
Sbjct: 748  QAVVTARADIEKDLRAAVGRQSFFLAYQPQVD-ASGQVIGAEALLRWQHQQRGTVSPAEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AEE  +I  + L++LE        W  +       + +N++++        + + A+
Sbjct: 807  IPVAEETGLILPLGLWVLETACAQAALWAARPGRERFTVSVNVSARQFRQANFVDQVLAV 866

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++++   P  +KL  +ES+++ N +     +  L+  G+  +LDDFGT  S LSYL  +P
Sbjct: 867  LARSGAHPRNLKLELTESMLLDNVQDIIAKMSALKARGVGFSLDDFGTGYSSLSYLKQLP 926

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + S +           I R+II +A+ +  ++IA+ +        L   GC   
Sbjct: 927  LDQLKIDQSFVRDLLTDPNDEVIARTIIALARTLGLSVIAEGVESVEQQDALAAQGCLAY 986

Query: 936  QDSHVASPLGFNSILKLLKE 955
            Q    + PL        L+ 
Sbjct: 987  QGYLFSRPLALADFEAFLRR 1006



 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 106/377 (28%), Gaps = 28/377 (7%)

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239
            +       T + G+   +     + + +   +            +  VL  +    G  
Sbjct: 87  SWVAVTGVSTFFGGLRALLVVAYPLLILMGGWLLGLR--AAAVLASLTVLAIVGFVVGDA 144

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL--------HWNRWHAKVGYI------ 285
              +  P     +     + A S   ++ +   +           R  + +         
Sbjct: 145 WAWLPTPPPTPAVMHGLVQGACSLVALLLIVFLVRSYQSRIDDVRRLASDLAQRTAELQA 204

Query: 286 -------TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                    +     + ++ +      ++A   RI         +       +   +R  
Sbjct: 205 READLNRAQAVANVGSWVYDLVSGRIDMSAETCRILGLPTGTVGSLDAFMARVHPDDRDT 264

Query: 339 LLIPAWILIFIWFIGLWMA-ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
           L   A   +        +  +       I Q A V        L      Q + A     
Sbjct: 265 LQQAAAAALRGEPFDNELRLVFGETTRWITQRAEVEFDEEGKPLRSLGTTQDITARKQLE 324

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             +    E   L     G+ +   D+   R+  +P      G     + G        +H
Sbjct: 325 ASLREQKEFFRLISESIGEHIAVLDLQGQRLYNSPSYGQFFGDTRD-LRGSDS--FADVH 381

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR+  + +        RG+ + E+R+   D     M    R + +  G+  R + ++ 
Sbjct: 382 PEDRERVKRVFRQTTETGRGQ-EIEYRLVRNDGSVRHMASAGRVLGDRQGEAARVVVVSR 440

Query: 518 DITEQKKSLEGILCNAF 534
           D+TE+K++ +     A 
Sbjct: 441 DVTERKQAEQWERIAAT 457


>gi|257093702|ref|YP_003167343.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
 gi|257046226|gb|ACV35414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1542

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 155/566 (27%), Positives = 267/566 (47%), Gaps = 17/566 (3%)

Query: 399  GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                  E+  LA      + + V   D  +  +T     +T+ G     + G   R    
Sbjct: 975  ARKRAEEQLRLAALVFDRASEGVMVTDTEQRILTINDSFSTLTGYTRQEVVGKTPRLLRS 1034

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                  R+ +  + D     R G  Q E   R  + + +   + I  + + NG ++ Y+G
Sbjct: 1035 DRMP--REFYAEMWDKV--TRLGVWQGEIWNRRKNGEPYLEWLSINTVKDKNGKVVNYVG 1090

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            + +DIT+ ++S + I   A  D LTG+PNR  F DRL   L  +         V+ ID+D
Sbjct: 1091 MFSDITKVRESQQRIEYLATHDELTGLPNRALFNDRLNLALAHAERS-RESVGVVFIDLD 1149

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K +ND LG   GD +L     R+ E ++  D +ARL G+ F ++L++  +  +    A
Sbjct: 1150 NFKVVNDTLGHETGDKLLKQAAMRLLECVRAEDTVARLGGDEFVVLLVN-ADRQQATLTA 1208

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              +   ++   +  E E  ++ASIG + +      ++ +++NA+ AMY AK  G N    
Sbjct: 1209 ERLLTGLSTSYHFGEHECFISASIGLSMFPEDASDANSLMRNADSAMYRAKDHGKNGFRF 1268

Query: 695  FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            F     S  S R+ ++  L  A+EN EL++ Y P +RL  + +VG EAL++W +     I
Sbjct: 1269 FSADLASQASKRLALETGLRRAIENGELFVHYQPQVRLECDTVVGAEALVRWRY-NGEVI 1327

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                F+ IAE+  +I AI+ ++L    R II W      PP+ I +NI+++    + +  
Sbjct: 1328 DPVVFIPIAEQSHLIFAIDDWVLGEACRQIIEWDRAGL-PPLRISVNISARHFRKDGMAA 1386

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             +  ++S    SP R+ +  +E V+M + +R++ +L  L + G+ +++DDFGT  S LSY
Sbjct: 1387 DLMDIVSAHGVSPQRLCIEITEGVLM-DVDRAQRMLAELVESGLRISIDDFGTGFSSLSY 1445

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P   +K   S + G        AI   II +A+ +  +++ + I       EL   
Sbjct: 1446 LKRFPIHELKIARSFVDGISTDADDRAIASVIISLARQLGMSVVGEGIERTGQHAELEAF 1505

Query: 931  GCDYIQDSHVASPLGFNSILKLLKER 956
            GC   Q    A PL  ++    +  R
Sbjct: 1506 GCHRGQGFLYAQPLAPDAFADWVLAR 1531



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 7/168 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           I P L     +  +++ F     +      ++       R    +  S  ++   D    
Sbjct: 828 IAPLLRDTQRIAGVILLFADNTSLYEVERSARETQV---RLQAVMNNSVSLMAVKDAPGR 884

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                P      G A+G + G     L        D FR      +  R+G ++ E  + 
Sbjct: 885 YQFANPKFEQTFGFATGEVIGKTD--LQLFPEAVSDLFRESELEAIRLRKG-IEREESLP 941

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            A  + H++++R  P+ + +G I      A DIT +K++ E +   A 
Sbjct: 942 LAAGERHFLVVRF-PLFDDDGAITGLCFQATDITARKRAEEQLRLAAL 988


>gi|144899939|emb|CAM76803.1| protein containing a membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 913

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 147/571 (25%), Positives = 265/571 (46%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +     S AV  S   V             P    I G A+ ++ G     L  +
Sbjct: 342 QKKAETSLNLLSQAVEQSPVAVAVVTDQGLVEYVNPAHQRITGHAADTVIGHP---LAGL 398

Query: 457 HI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +    R  F  +  +    R      E  V A D +  W  I   P++    +I  ++ +
Sbjct: 399 YPGQSRAWFGEMWQALC--RGADWGGEVPVVAEDGKLRWQQIFASPVAPQGHEITHHLVV 456

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D++ +K+    IL  A  D LT +PNR   LDRLT   + +  D   R  ++ +D+D 
Sbjct: 457 VEDVSLRKEQDRKILHQALYDGLTDLPNRAMALDRLTVATEEA-RDAGTRVGLLFVDLDD 515

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG   GD++L+  + R+ + +    ++AR  G+ F +IL    +  +    A 
Sbjct: 516 FKGINDSLGHEYGDELLILASERLCQAVGEGGMVARFGGDEFLVILP-LVSPEQAEWAAD 574

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + ++   P  +  R++  TASIG A +     T   +L+NA++AMY +K  G N    F
Sbjct: 575 RIVQAFVEPFTISRRDLITTASIGVALYPEDGRTPQTLLRNADIAMYQSKLAGRNRYCCF 634

Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             R++     R+ ++ +L  AV   +L+L + P++ +    + G+EAL++W++P+ G++ 
Sbjct: 635 TARMNDEAEARLRLESELRRAVGTEQLFLHFQPLVHVESGRVAGIEALLRWNNPELGSVP 694

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AE   +I  I   +L +  +  + W  Q   P + + +N++ +   D    + 
Sbjct: 695 PDRFIPQAETCGLIVPIGRDVLRQACQTALPWL-QGGHPDLLLCVNVSPRQFQDGAFLDD 753

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T +    ++L  +E +++        LL  L  +G+ L +DDFGT  S LSYL
Sbjct: 754 VRTILRETGFPAGNLELEITEGLLLKERGDIDGLLQGLHDMGVHLAIDDFGTGYSSLSYL 813

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PF T+K + S M G     +R  ++ +I+ MA  +   +IA+ +     +  L  +G
Sbjct: 814 ERYPFHTLKIDRSFMIGMLERHERKVLVDTIVAMATGLGLKVIAEGVETAEQLARLRAIG 873

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           CD  Q    + P+    I  LL  RF L + 
Sbjct: 874 CDLAQGYLFSRPVPAEQIFALLDNRFGLDER 904



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             + +    D V         +  +P++  +LG  +  + G   + +  +  +DR     
Sbjct: 112 LDIILGRLPDAVISVGGDGRILWVSPNVRRLLGYDATELVGHDVSVIYAV-ASDRKVV-- 168

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            LD     +   ++ EF+ RA D    W++     + +  G      G+  DI+E  +  
Sbjct: 169 -LDLVRAGQGEAVRVEFQARAKDGSDVWVVAYGCAVFDDQGRFNGVRGVLRDISENHRMR 227

Query: 527 E 527
           +
Sbjct: 228 K 228



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 10/142 (7%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V++ +       + +    +R       + + +         +        + G     
Sbjct: 215 GVLRDISENHRMRKTLEDSEDRFRRLSDVTNEAI-CIHFQGRILDCNRAFHDLFGYERAD 273

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
               +  W   IH +D    R ++            YE R    D     M I  +    
Sbjct: 274 FD-TLTAW-NVIHTDDLPLAREMVRIQYQKP-----YEVRGVRKDGSVFPMEIHSKESWM 326

Query: 505 SNGDILRYIGIANDITEQKKSL 526
             GD+   +    D+TEQKK+ 
Sbjct: 327 --GDVAVRVTCIRDLTEQKKAE 346


>gi|229170009|ref|ZP_04297701.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|228613434|gb|EEK70567.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 885

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 182/857 (21%), Positives = 347/857 (40%), Gaps = 34/857 (3%)

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174
           S  F   L              +  R+   D   F   ++P     F +      L  I 
Sbjct: 41  SRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FFYL------LFLIS 89

Query: 175 LWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230
                 Y+       L +   I      + A F   +Y++   ++ I T +    +V L 
Sbjct: 90  FAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 149

Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287
           Y   D  FL   +NL    L +        L S+LI++      Y +   +  +    T 
Sbjct: 150 YPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAYIKYFQPEHSMFTV 209

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           + +  + +L               +  +     +     +          ++ I    + 
Sbjct: 210 APLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVF 269

Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFS 402
             I  IGL +     L    +       L+L  +        Q  L T    +    ++ 
Sbjct: 270 APIVVIGLMVTFAFVLIRHTLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYH 329

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +          D ++  D+  + +       T+LG  +  +      +   ++  D +
Sbjct: 330 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 387

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              T        +   +  E R    +   +++ +   P+      I     +  DITE 
Sbjct: 388 EIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITES 444

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E I   A+ D LT + NR+SF  +L   +  +         VM +D+D++K IND 
Sbjct: 445 KQQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKRP-FAVMFLDLDRFKVINDT 503

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L+++ +R+  +      LARL+G+ F I++        +   A  +  S+ 
Sbjct: 504 LGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMN 563

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  + + ++ SIG A +  +      +L++A++AMY  K++G N    +    ++ 
Sbjct: 564 EPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKK 623

Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I++DL LA+ N E +LVY P + +   +I+G EALI+W HP  G+IS  EF+ I
Sbjct: 624 MERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGDISPCEFIPI 683

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   +  +  ++L    R +  W+       + + +N+++K+   N+L E +  ++  
Sbjct: 684 VEETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISQILKD 742

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S L+YL   P DT
Sbjct: 743 VKIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 802

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  
Sbjct: 803 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGY 862

Query: 939 HVASPLGFNSILKLLKE 955
           + + PL     +K L++
Sbjct: 863 YFSKPLTSKQFIKFLQK 879


>gi|91794728|ref|YP_564379.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716730|gb|ABE56656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1479

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 136/575 (23%), Positives = 268/575 (46%), Gaps = 13/575 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               +  + +     + + S+    + A   + + +   D     + +      I      
Sbjct: 909  IARVAGIYSDISVQRELESEINLLAQAFENTTEGMLILDANETVIISNLAANLIFTTKPN 968

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             + G   + L       +      +D  +         E  +   D +     I I  M 
Sbjct: 969  ELIGLSLSELVR-----KSEINLSVDGLL-GNGTSWNGERELLRRDKRTFPAWINISMMK 1022

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              N  I  Y+ + +DI+E+K++   +   A  D LTG+ NR  F  RLT I+  +  +D 
Sbjct: 1023 AENSLIKHYVLVFSDISERKQNELNLRYLANNDVLTGLANRAMFTRRLTQIISFATLNDE 1082

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             +  ++ +D+D++K +ND  G ++GD +LV   RR+   L    ++ R  G+ F I+L  
Sbjct: 1083 -KLALLFLDLDRFKHVNDSYGHSMGDALLVEAARRLQSCLTENHLVCRFGGDEFVILLRD 1141

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +   I   A ++ K+I  P  L  RE  ++ SIG + W    I    ++KNA+LAMYH
Sbjct: 1142 AGDIDGINHVADSLLKTIEQPFKLEGREFFISTSIGISVWPDDSIDPETLIKNADLAMYH 1201

Query: 684  AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEA 740
            AK  G  + + +           + ++ DL  A+E  E  L Y P + +   + +VG+EA
Sbjct: 1202 AKEEGRGNFQYYSSERNAEALYHLRLEADLRKAIERDEFTLNYQPQVDILHQDRVVGVEA 1261

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+W HP+ G I    F+ +AE   +I  I+ ++ ++  +D   W  +       + +N+
Sbjct: 1262 LIRWHHPEDGLIRPDIFIKVAESCGLIVDIDRWVFKQACQDAARWHTEF-EQSYKLSVNV 1320

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++      +  +G++ ++++T    S + +  +E V+M     ++  L +L+ +G+ +++
Sbjct: 1321 SAVSFRQADFIDGLKDILTETGMPASLLTVEITEGVLMKELHVAKAHLRKLKALGVKVSI 1380

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S L+YL +   +++K + S +      +   AI+ SI+ +A+N++  ++A+ +
Sbjct: 1381 DDFGTGYSSLAYLRHFEVNSLKIDRSFLIDIGVNKADQAIVSSIVELARNLKLEVVAEGV 1440

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                 ++++   GC  IQ  + A P+  N +   L
Sbjct: 1441 ESHEQLEQVFSRGCYLIQGYYFAKPMARNELEIYL 1475



 Score = 96.2 bits (238), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
             +        +L   +  I +L  +   + V      +Q +    +R   A+ GS   +
Sbjct: 763 WWQSQWFKWLVSLCIFIAFISML--WYRHRQVERFKKINQALVDSDDRLRQALRGSDSDL 820

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W+W      +    +   +LG           + LP +H NDRD  R    + +  +   
Sbjct: 821 WEWRSDTQMIYLDNNAG-LLG--DADFVHCPLSELP-VHENDRDRVRGEWIALLEDKGEL 876

Query: 479 LQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            + E+R    D    W+ +R R +      G I R  GI +DI+ Q++    I   A
Sbjct: 877 FESEYRYYRPDGSCGWLRVRGRAVDYQPGTGAIARVAGIYSDISVQRELESEINLLA 933


>gi|121608322|ref|YP_996129.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Verminephrobacter eiseniae EF01-2]
 gi|121552962|gb|ABM57111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Verminephrobacter eiseniae EF01-2]
          Length = 836

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/580 (24%), Positives = 257/580 (44%), Gaps = 14/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 V         +     R       S D  W+ D          D+ ++ G+   
Sbjct: 252 VRTFADVSDYLRVENQLRDSEARFRSLSDLSSDWYWEHDAQGRFTQLAGDL-SVNGMPLS 310

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G  R  +  +  N  +       + +  ++     E + R AD   HW+ +   P+ 
Sbjct: 311 AVLGRTRWEIGAL--NMTEADWAAHRAVLAAQQPFRDLELQRRRADGSMHWISVSGVPVQ 368

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G    Y G+  DIT +K++   I   AF D LTG+PNR+  LDRL     ++ T  N
Sbjct: 369 GADGTPRGYRGVGRDITGRKQAEGQIERLAFYDALTGLPNRRLLLDRLQHA-TVAVTRSN 427

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID+D +K +ND LG   GD +L    +R+   ++  D +AR  G+ F ++L  
Sbjct: 428 TQGALLFIDLDNFKSLNDTLGHDAGDHLLQQAAQRLKACVREVDTVARFGGDEFVVLLAG 487

Query: 624 ENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            + +   A          +  S+  P  L       T SIG A +        E+LK A+
Sbjct: 488 LSAAAAQASAEAAQVAKHIAASLGQPYALGGAVHHSTPSIGIALFGPQACRVDELLKQAD 547

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAMY AK  G N    F      +      ++ DL   ++  EL L Y P++      + 
Sbjct: 548 LAMYQAKAAGRNTQRFFDPEMQAAASHRSALEADLRRGLQQRELVLHYQPMVDGQ-GRLQ 606

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W+HP+ G +  +EF  +AE+  +I  +  ++LE     +++W   A      +
Sbjct: 607 GAEALVRWNHPQRGLMPPAEFTPLAEQTGLILPLGQWVLETACAQLVAWSRSALTRAFSL 666

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ +     +  + + A +  +  +P R+ +  +ES+++ + +     + +LR  G+
Sbjct: 667 SVNVSVRQFRQADFVQQLLATLEASGANPERLTIELTESLLLNDVQDIIARMQQLRCHGL 726

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
              LDDFGT  S LS L  +P D +K + S +          AI+RSI+ +A+++   ++
Sbjct: 727 GFALDDFGTGYSSLSQLKRLPLDQIKIDRSFVRDLPADAGDGAIVRSILALAQSLGLAVV 786

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +     ++ L   GC   Q  H   P+   ++    +
Sbjct: 787 AEGVETRAQLEFLQHHGCQTFQGYHFGRPMPPEALAHRFQ 826


>gi|88811676|ref|ZP_01126930.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Nitrococcus mobilis Nb-231]
 gi|88791067|gb|EAR22180.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Nitrococcus mobilis Nb-231]
          Length = 818

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 137/559 (24%), Positives = 259/559 (46%), Gaps = 20/559 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS------MHGPIRNWLPYIHIN 459
           R +  +  + D V   D+    +       ++LGLA         +      W       
Sbjct: 260 RLTATLEATTDFVAIADLQGHLLYANAARRSVLGLAPEDKVGICTLSDGHTEWAS----- 314

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                   + + +         E  +   D     +   I      +G++  +  IA +I
Sbjct: 315 -AKLMSKAIPTAMQE--DTWSGELALIDRDGLEIPVSEVIIAHRGPDGEVQFFSAIARNI 371

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E+K+  E +   A  D LT +PNR   LDR+   L  +   ++ R  V+ +D+D++K+I
Sbjct: 372 SERKRLEEELAYRASHDALTCLPNRSLLLDRMQQALAYARRYNH-RVGVLFVDLDRFKRI 430

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L ++  RI + ++  D ++R  G+ F +I     +S  +A     +RK
Sbjct: 431 NDTLGHHAGDTILRTVAERICQGVRRSDTVSRHGGDEFVVIAAQVFDSNDLASIVSKIRK 490

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +++ PI +  R++ +T SIG A +      +  +LKNA+ AMY AK  G N  + +    
Sbjct: 491 TVSEPIKVKNRQVVLTCSIGIALYPFDGEDTDTLLKNADTAMYQAKENGRNDFQYYTKEM 550

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                + + ++E+L  AV+  E  L Y P + L    +  LEALI+W HP+ G ++   F
Sbjct: 551 NAQSHEMLNLEEELRRAVKAGEFVLHYQPQVDLQTGALSRLEALIRWQHPERGMLAPGTF 610

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + EE  +I+ +  +++    R    W++    PP+ + +N++ +   +  + E ++ +
Sbjct: 611 IPVLEETGLIEPVGEWVVREAVRQCAVWKEMEL-PPVTVAVNLSVRQFANLNIAEAIERI 669

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P+ ++L  +ESV+M +       L  L + G+ + +DDFGT    L YL  +P
Sbjct: 670 VTEAGIPPACLELEITESVLMADAFDGAEALRALSQRGLRVAVDDFGTGYCALHYLRRLP 729

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +T+K + S ++         AI+ +II +  ++   ++A+ +        L R+GCD  
Sbjct: 730 VNTLKVDHSFVSDLEGDPTTAAIVSAIITLGHDLGCKVVAEGVETLAQCNHLHRLGCDLA 789

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q      P     I  LL+
Sbjct: 790 QGYLYYRPCPPEEIEPLLQ 808



 Score = 71.1 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 10/163 (6%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++                       ++ S A+  + + V+  +         P    + G
Sbjct: 112 LVPAVRRELREAKLRRERVRAQKQLQKLSRAIEQTAECVFITNPDGIIEYVNPAFERLTG 171

Query: 440 LASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             S   M    R      H      +R +  +      G  +     R  +    +    
Sbjct: 172 FTSEEAMRNSPRILRSGQHSA--SFYRDMWRTLKDG--GVFRGMVINRRKNGALFYEEKV 227

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-----AFQD 536
           I P+ +SNG I  ++    +I+++ ++            A  D
Sbjct: 228 ITPIKDSNGVITHFVSTGQNISDRMEAETIRKRLTATLEATTD 270


>gi|323487729|ref|ZP_08092987.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
 gi|323398463|gb|EGA91251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
          Length = 776

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 162/748 (21%), Positives = 333/748 (44%), Gaps = 35/748 (4%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
             + +     +    L ++++       L         +         + +LII      
Sbjct: 34  GEARIFNQIGIVLSYLAWLALGIFSYVNLELYDPKIAYLIIFLLYPIFTINLIIL----- 88

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
                  +         A    +  +   +         I     +   + F  +   + 
Sbjct: 89  ----HSHRFKKYYQPMTAISNGVAGVGILFIGHIILKNDILAICGITVVSLFSFFILRQR 144

Query: 334 YERAVLLIPAWILI-FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           ++ +V+    + ++  I  +G        L   ++    + G  ++      T +Q+ L 
Sbjct: 145 FKISVMTTLIYAIVNQILLVGTSEVAMFSLFMWMLLITCIVGGNILERANRKTFLQNKLR 204

Query: 393 TGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
               ++ +  D    ++  ++    IV + D     + T P    + G     +      
Sbjct: 205 RIAEAENLDKDKFLTNMFNLVSVPIIVAEEDHQ--ILETNPASNKLFGREQQYL------ 256

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  +  ++R     +L  F+  R     +E  +   +      ++ +  +      I  
Sbjct: 257 -IDLLAPSERRRMT-LLKGFLK-RTPIHNFEAELVDQEGHIISTLVNVNFVEREGKKIS- 312

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I    DI+++KK+ E     A+ D LTG+PNR  F ++L + ++L          V+ I
Sbjct: 313 -ICAIQDISDRKKAEEESTYLAYHDTLTGLPNRLQFTEKLNSFVELEQE-----IAVLFI 366

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+DK+K +ND  G  VGD +L  + +R+   +   DI++R+ G+ F IIL+      +++
Sbjct: 367 DLDKFKMVNDTRGHTVGDKLLQQIAKRLISCVSRGDIVSRIGGDEFTIILLGRT-KFEVS 425

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + + I  PI + + E+ + +SIG + + S       ++KN+++AMY++K  GGN+
Sbjct: 426 RIVERILEEIRKPIFIDQHELYLRSSIGISFYPSDGENIESLIKNSDIAMYNSKVLGGNN 485

Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + F  S   S   RV ++E+L  A++N+EL + Y P I      + G EALI+W HP+W
Sbjct: 486 YKFFTNSMNSSFEERVNLEENLHTALDNNELVMYYQPQIDPKTGCMYGAEALIRWIHPEW 545

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+ IAEE  +I  I  ++L    +  + W DQ    P  I +N++ K  ++++
Sbjct: 546 GIVPPDRFIPIAEETGLIIPIGEWVLRTACKQAVEWNDQYGR-PFHIAVNLSVKQFVNSD 604

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           + + ++ ++ +T  +P+ ++L  +ESV + N E    ++ +L+K+G+ +++DDFGT  S 
Sbjct: 605 IVDTVERVLEETGLNPNILELELTESVFLENTESMIAIMNKLKKLGVRISIDDFGTGYSS 664

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL  +P D++K + S +   ++ +   +I+ +II +A+ ++   +A+ +         
Sbjct: 665 LSYLKDLPIDSIKIDQSFIRNLSKSKKTNSIISTIISLAQKLDLKSVAEGVETLEQYNYF 724

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
              GCD  Q  + + P+  + I  LL  
Sbjct: 725 KEEGCDLAQGYYFSRPVPVDQIASLLDR 752


>gi|311235119|gb|ADP87973.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris RCH1]
          Length = 584

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 152/540 (28%), Positives = 259/540 (47%), Gaps = 10/540 (1%)

Query: 419 WDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           W+            TP    I G    +           IH +D   +R      +    
Sbjct: 44  WECWESPEGRVHFVTPACQRISGFGIDNFRAHHLFIEGLIHPDDLPAWRRH-REMLTASL 102

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
            + + E R+R A+    W+ +  R +++ +G+ L       DIT++K  L  +   A+ D
Sbjct: 103 PKAEVEIRIRTAEGGEKWLAVTSRNLTDGHGEPLGIRSSLRDITDRKMVLSQLRHQAWHD 162

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR   LDRL   L   A  +     V+ +D+D++K +ND LG A GD VL    
Sbjct: 163 PLTGLPNRALCLDRLDRALGRLARGNGELCAVVFLDLDRFKLVNDTLGNAAGDRVLRETA 222

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR+G   +  D ++RL  + F I++       +       +R++   P ++  R + VTA
Sbjct: 223 RRLGTATRSTDTVSRLGSDEFIILIEDLRGEDEARATLGRLREAQRAPFDIDGRHLRVTA 282

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714
           S+G          + E+L+NA +AM+HAK  GG+    F  S      D + ++ DL  A
Sbjct: 283 SMGVVLAR--GGNADEVLRNANIAMHHAKEHGGDAASFFHASMLEEALDLMQLEIDLHRA 340

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN E +LVY PI+ ++D  I G EAL++W HP+ G +    F+ +AE   +I  +    
Sbjct: 341 LENDEFFLVYQPIVSVVDRRITGFEALLRWRHPERGVVGPDAFIALAEHSGLIHLLGRKA 400

Query: 775 LERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           L+   R +  WR        + + +N++++ L    + E +   +  +   P  +KL  +
Sbjct: 401 LDEACRTLAKWRRVDQLFDGLTMHVNLSARQLSQTHIVEQVAEALRDSCLPPHLLKLEVT 460

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           E+++M NP+ +  +L RLR IG+ + +DDFGT  S LSYL   P DT+K + S ++  T 
Sbjct: 461 ETMLMENPDYANAVLCRLRDIGVGVCVDDFGTGYSSLSYLQRFPIDTLKVDRSFVSRMTR 520

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  I++++I +A ++   ++A+ +  E     L  + C Y Q    A PL    +  
Sbjct: 521 EPGQFKIVQAVIALAHSLGLEVVAEGVEDEEQRIMLLGLACRYAQGFLFAKPLAAEDVPA 580


>gi|330952247|gb|EGH52507.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 565

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 141/561 (25%), Positives = 259/561 (46%), Gaps = 16/561 (2%)

Query: 398 QGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
           +    D +R  LA      + + V   D     V        I G  +  + G     + 
Sbjct: 3   ERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPSKFK 62

Query: 454 PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              H           L S      G+   E   R    + +     IR +   +G    +
Sbjct: 63  SGRHGPEFYRQMYHSLQSA-----GQWSGEIWNRRKSGEIYPQWQTIRCIKGEDGQARHF 117

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +DIT  K+S + +   A  D LT +PNR    DR++  L  +         ++V+D
Sbjct: 118 VAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSKRGCALLVVD 176

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D ++ IND LG  +GD+VL +   R+  L      ++RL G+ F +++ +  + +  A 
Sbjct: 177 LDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVHAAA 236

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +   P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G    
Sbjct: 237 LAQQVINAFKAPYPIGGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGREGF 296

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +     +    RV +  +L  A+E  +L + Y P+  L+   I  +EAL++W HP  G
Sbjct: 297 ALYTEELTAHAQQRVQLASELRQAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHPTRG 356

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S  +F+ IAE+  +I  I+ ++L    R + +W  +       + +N++S+     ++
Sbjct: 357 MVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSRGDV 415

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  ++++T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S L
Sbjct: 416 DRRVAEVLNETGLDPAFLELEVTESAVMEDPEQAIKQLHRLRELGLSLAIDDFGTGYSSL 475

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P   +K +   + G       IAI+R++I +A ++   ++A+ I        L 
Sbjct: 476 LRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRTVIALASSLGMRVLAEGIEHASQASFLL 535

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
             GC+  Q    A P+   SI
Sbjct: 536 SNGCELGQGYWFARPMAAQSI 556


>gi|87199053|ref|YP_496310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134734|gb|ABD25476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 769

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 173/769 (22%), Positives = 329/769 (42%), Gaps = 45/769 (5%)

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN-LPSGELLIWRACSEIALSSSLIIF 268
           +   R         + +  L   ++    + +         LL+      +++  S   F
Sbjct: 14  WGRLRGLQYSSLARLTFARLMAHAVAALLVLQTFGGRVHPALLVGWMALLVSVLISGARF 73

Query: 269 LFMYLHWNRW-----HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
               +  +R            I+   +A    L  + F      A    +     +L   
Sbjct: 74  DRSLVDADRRRVSRQEMHRQTISSLFVALAWALPMLVFGPFGDAAGRMTLWTVLAMLMTG 133

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             + +  M          P   ++F   +G+        + +    A+    V+IV +  
Sbjct: 134 MAVTFAAM----------PMATVLFSGVVGVSAVAAFLFEGEYTAAAVSTVFVVIVSVGA 183

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILG 439
             V +  L       G+    E  SL +     G  D +W  D  R   + +P  A  LG
Sbjct: 184 VEVARTFLGARVAEAGMAEKSEVVSLLLREFEEGDADWLWQVDANRRIRSVSPRFAFALG 243

Query: 440 LASGSMHGPIR-------NWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                + G           W   + H +  D     L   +  R        R       
Sbjct: 244 ADPEDLEGKPLIQVIAGPAWEDGHFHSSLHD-----LAERLKRRESFSNLLVRA-TLHGS 297

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             W  +   P  + NG  + + G+ +D+TEQ++S E I   A  D LTG+PNR    + L
Sbjct: 298 HRWWELSASPKVDDNGTFVGFRGVGSDVTEQRESAEKIAYLARYDTLTGLPNRLMLTEAL 357

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              +  S          ++ID+D++K +ND LG  VGD +L  ++ R+  ++K  ++  R
Sbjct: 358 GDAMGYS-EKWRSNCAFLMIDLDRFKAVNDTLGHLVGDQLLAMVSDRMTRIIKDGEVCGR 416

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F +++    +S +IA+ A A+  +++ P  +    + V AS+G A       T  
Sbjct: 417 LGGDEFAVVVRDVADSQRIAELADAIIATLSQPYEVDHHMLYVGASVGSAIGPRDGATVE 476

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIR 729
            +L+NA+LA+Y AK  GG    ++  +      +R  ++  L  A+E SE  LV+ P++ 
Sbjct: 477 TLLRNADLALYRAKDEGGGSHCTYEPALHAHAEERRKLEFSLRHALERSEFGLVFQPVVD 536

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
              E +V  EAL++W+  + G++S ++F+ +AE+  +I  I  ++L    ++ ++W    
Sbjct: 537 ATSEAVVSFEALLRWNSEEHGSVSPAKFIPLAEDTRLIVPIGEWVLRMACQEAMNWP--- 593

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P + I +N++ + LLD    E +   ++ +   P R+++  +ES+ + +   +++ L 
Sbjct: 594 --PHVKIAVNVSGEQLLDPYFAETVVGALAASGLPPHRLEIEVTESIFVRDATVAQMTLE 651

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMA 906
            L  IG  + LDDFGT  S L YL  + F T+K + S + G      + +AI+R+++ MA
Sbjct: 652 NLMGIGCGVALDDFGTGYSSLGYLRKMRFSTIKVDRSFVQGAAKDNPESLAIVRAVVAMA 711

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++ +  A+ +  E +++ + R+GC  IQ  +   P+       L  +
Sbjct: 712 DSLDMSTTAEGVETEAELETIRRLGCKKIQGYYFGRPMSAADARGLFSQ 760


>gi|229136118|ref|ZP_04264871.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228647277|gb|EEL03359.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 734

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 156/736 (21%), Positives = 314/736 (42%), Gaps = 20/736 (2%)

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288
           L ++ I    L + ++L   ++      + I  +++  I+ +       +  +    T +
Sbjct: 4   LLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAY----IKYFQPEHSMFTVA 59

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
            +  + +L               +  +     +     +          ++ I    +  
Sbjct: 60  PLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVFA 119

Query: 349 -IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFSD 403
            I  IGL +     L   ++       L+L  +        Q  L T    +    ++ +
Sbjct: 120 PIVVIGLMVTFAFVLIRHMLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYHN 179

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +          D ++  D+  + +       T+LG  +  +      +   ++  D + 
Sbjct: 180 QQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLEE 237

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             T        +   +  E R    +   +++ +   P+      I     +  DITE K
Sbjct: 238 IITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITESK 294

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A+ D LT + NR+SF  +L   +  +         VM +D+D++K IND L
Sbjct: 295 QQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKR-PFAVMFLDLDRFKVINDTL 353

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+++ +R+  +      LARL+G+ F I++        +   A  +  S+  
Sbjct: 354 GHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMNE 413

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +  + + ++ SIG A +  +      +L++A++AMY  K++G N    +    ++  
Sbjct: 414 PFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKKM 473

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I++DL LA+ N E +LVY P + +   +I+G EALI+W HP  G+IS  EF+ I 
Sbjct: 474 ERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGDISPCEFIPIV 533

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   +  +  ++L    R +  W+       + + +N+++K+   N+L E +  ++   
Sbjct: 534 EETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISQILKDV 592

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S L+YL   P DT+
Sbjct: 593 KIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTL 652

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  +
Sbjct: 653 KVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGYY 712

Query: 940 VASPLGFNSILKLLKE 955
            + PL     +K L++
Sbjct: 713 FSKPLTSKQFIKFLQK 728


>gi|227818393|ref|YP_002822364.1| hypothetical protein NGR_b01450 [Sinorhizobium fredii NGR234]
 gi|227337392|gb|ACP21611.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 820

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 135/580 (23%), Positives = 258/580 (44%), Gaps = 21/580 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++++       +       R       +  ++W           +       G  + 
Sbjct: 237 YGTVENIDDRRKALEAAKESEARFRAIADDAPVMIWVTGEDGADDYHSRLWLETTGQTAE 296

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    WL  +H  DR+            RR  ++ E+R++ A     W+I   +P  
Sbjct: 297 QAAGK--GWLNAVHPEDRNAVERAFYQAFE-RRKSVRMEYRLKRAGGGSAWVIDIGQPRF 353

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            ++G  L ++GIA DITE++ + +        I   A  D LTG+PNRQ   +    + D
Sbjct: 354 ATDGKFLGFVGIALDITERRNAEQERLLAQKQIHHMARHDALTGLPNRQFLREEFERLSD 413

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A     R  ++ +D+D +K +ND  G A GD +L  +  R+   L+  DIL RL G+ 
Sbjct: 414 QIAA--GTRIAILCLDLDGFKAVNDAYGRATGDLLLRRVAERLQNCLRQSDILCRLGGDE 471

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++ +  N++ +    A  +   I  P  L    + +   +G A+         E++K 
Sbjct: 472 FVVLRVGINSNAEARLLAQQLIDVIEAPYELAGTHVDLGVIVGLAAAPKGDQPVDELIKA 531

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+  AK  G      +        +    ++  L  A+ N +L + Y P++ L   +
Sbjct: 532 ADVALDRAKSGGRGTYVQYEPEMDAHLQAVQQMRVSLRQALANGDLEVHYQPLVDLHTGK 591

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I   EAL +W HP+   +S +EF+ +AEE  +I ++  ++L +   + + W      P +
Sbjct: 592 ITTFEALARWPHPERDQVSPAEFIPVAEETGLIGSLGEWILRQACTEALKWP-----PHV 646

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++     +  L   +  ++ +T    SR++L  +ESV++ + + +  +L  +R++
Sbjct: 647 SVAVNLSPLQFRNQGLAATVGDILEETGLEASRLQLEITESVLLDDCDGNLQILKAIRRL 706

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G+ + +DDFGT  S L YL   PFD +K + S +T   + R   AI+R++  + +++   
Sbjct: 707 GVKIAIDDFGTGFSSLGYLRTFPFDKIKVDRSFITDLPDGRESLAIVRAVAAIGRSLGIV 766

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              + +  +     +   G D  Q   +A PL      KL
Sbjct: 767 TTVEGVERQRQFDVIKAEGFDEAQGYLIARPLPAEQATKL 806



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    I            + +  E     V     + W  D     +   P      G A
Sbjct: 110 VIVATILDFTERRRAESELHASEEHYRSLVELHPQVPWTADPSGQVLEIGPRWEN-TGFA 168

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W    H +D D  +      +      L  EFR+ AA+  + W   R   
Sbjct: 169 PNEALG--EGWAKATHPDDLDPVQQAWAKSLET-GEPLDIEFRLAAAEGGYSWYRSRAAT 225

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
               +G ILR+ G   +I +++K+LE
Sbjct: 226 RRAEDGSILRWYGTVENIDDRRKALE 251



 Score = 38.4 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 5/131 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +      +   D              ++G   G + G        IH     +   
Sbjct: 7   FEAILNAIPVPIIVKDEQFRFSFLNEAACALVGRRPGDLIGCTDYD---IHPTAEADRIR 63

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR--YIGIANDITEQKK 524
            +D  V      +  E  +     +   ++ R      + G+      +    D TE+++
Sbjct: 64  EMDKRVLCTGEEVSIEAEIVVTGGELRTLLTRTCRAELTRGNTSENVIVATILDFTERRR 123

Query: 525 SLEGILCNAFQ 535
           +   +  +   
Sbjct: 124 AESELHASEEH 134


>gi|299535077|ref|ZP_07048402.1| hypothetical protein BFZC1_03603 [Lysinibacillus fusiformis ZC1]
 gi|298729394|gb|EFI69944.1| hypothetical protein BFZC1_03603 [Lysinibacillus fusiformis ZC1]
          Length = 581

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 139/551 (25%), Positives = 270/551 (49%), Gaps = 12/551 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
                 + +   D  +  V   P    + G     + G         +H  +   +  + 
Sbjct: 27  IFENVSEGIMITDKYKKIVMVNPAFEFVTGYTCDDVVGKTPAVLQSGVH--ELPFYLEMW 84

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +       G  Q E   R      +   + I  ++N  G++  Y GI  D++E+K     
Sbjct: 85  EQIRQE--GIWQGEIWNRRKTGDVYPEWLTIVCVTNDEGEVTNYCGIFTDLSERKIVENE 142

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
           +      D+LT + NR ++++R+  +L+  SA   +++  +  +D+D++K+IND LG AV
Sbjct: 143 LEKRLLTDSLTDVSNRFAYIERMDNLLESTSAISHSVQHAIYFLDLDRFKQINDTLGHAV 202

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L+ +  R+ +LLK  DI+AR  G+ F I L +  N  + A FA  +  SI  P+ +
Sbjct: 203 GDSILIEVANRLKKLLKNKDIIARYGGDEFVITLTNVKNVKEAAKFAEQIISSIEQPMMI 262

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRV 705
            ++E+ ++ SIG + +      + E++  A+ AM ++K     G       + +     +
Sbjct: 263 NDQEVFISTSIGISVYPVDSKNTEELINCADRAMTYSKKNELNGYSFYFDELQTDAQRVL 322

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           ++  +L  A+EN E  L + P I + +E+I GLEAL++W+  + G +S +EF+  AE+  
Sbjct: 323 LLDSELRRAIENREFELHFQPKISMENEQIQGLEALVRWNSERLGFVSPAEFITYAEDTG 382

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  ++  ++E+    +I  R      P  + INI+S         E +Q ++ +     
Sbjct: 383 LIIPLSELIIEKACEAVIQMRQYGWKTP--VAINISSIHFKQQNFLESIQTILERYNMPA 440

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +  ++  +E  VM N   +   L RL+++G  +++DDFGT  S LSYL   P D +K + 
Sbjct: 441 NNFEIEVTERTVMNNANETVSKLVRLKQLGFKISIDDFGTGYSSLSYLVRFPLDCLKIDR 500

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +      +++ A++ +II M+  ++  ++A+ +     +  L +M CD IQ  + + P
Sbjct: 501 SFIQHIGSLDEKQAVVDAIIQMSHRLKMKVVAEGVEQAQQVDILRKMNCDIIQGYYYSKP 560

Query: 944 LGFNSILKLLK 954
           L  N +++ ++
Sbjct: 561 LPLNELMEFME 571


>gi|218438272|ref|YP_002376601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218171000|gb|ACK69733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 706

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 142/576 (24%), Positives = 255/576 (44%), Gaps = 28/576 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +I  +         +     R S  +    D +   D              + G     
Sbjct: 148 GIITDITERKKTEIALQQSEHRLSQIITTISDGLIVVDYEGTVKFVNAATEKLFGRTKQE 207

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +              D D                   E  +R ++       IRI  ++ 
Sbjct: 208 LIDQKLGIPFV----DGDR-----------------TEIYIRHSNGHLIIAEIRISEITW 246

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +   Y+    DIT++K   + +  +A  D LT + NR   L++L  +L+ +      
Sbjct: 247 KQENA--YLISLRDITDRKYITDQLQYHATHDPLTDLFNRNFLLEKLQNLLEKNKNQSGK 304

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +D+D +K +ND LG   GD +L+ +T+R+   L     LAR  G+ F I+L + 
Sbjct: 305 SFAILFLDLDDFKVVNDSLGHLAGDQLLIMITKRLQNSLGQNHTLARFGGDEFTILLENI 364

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +      A  +  ++  P NL  ++I +  SIG A  +       E+L++A++AMY +
Sbjct: 365 KETQDAIIAAQKIHSNLTYPYNLNGQQIFINTSIGIALSSPDYTHPYEILRDADIAMYQS 424

Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G      F          R+ ++ +L  A+E  E    Y PI  L   +++G EALI
Sbjct: 425 KKQGKGACTLFNQQMHEQAVKRLQMEIELRQAIEQQEFIAHYQPIFSLTTGKLIGFEALI 484

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIA 801
           +W H + G IS +EF+ IAEE  +I  +  ++L      +  W++Q +    + I +N++
Sbjct: 485 RWQHSQKGLISPAEFIPIAEETGLIVPMGKWILLEACTQLKQWQEQYDHEHILQISVNLS 544

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           SK L D  L + +  +++ T  +P  +K+  +ES++M N + +  +L +L++    L LD
Sbjct: 545 SKQLRDPYLVQEIDKILTHTEINPQNLKIEITESLLMENFDTAMNILLQLQERNTQLCLD 604

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P D +K + S +         + I+R+II +A ++   +IA+ I 
Sbjct: 605 DFGTGYSSLSYLHRFPVDILKIDRSFVMQMHSGNNNLEIIRTIITLAHSLNMRVIAEGIE 664

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E  + +L  + C+  Q    + P+       L+KE
Sbjct: 665 TESQLSQLKSLNCEQGQGYLFSKPVPQEVAESLIKE 700



 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 3/153 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442
            ++ +  ++      GI     +    +    DIVW   +     +        I G++ 
Sbjct: 18  LSISEDTISLQKIENGIKQSQAQLKSILDSLKDIVWSVSLPSFQYIYLNKTAEDIYGISI 77

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                    WL  +H  DR N +  L             E+R+   D Q  W+  RI+ +
Sbjct: 78  SEFFKNSNLWLEMVHPEDRSNIKQ-LARNWDQSDINKDIEYRIIRPDGQIRWLHNRIQVI 136

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            N     +R  GI  DITE+KK+ E  L  +  
Sbjct: 137 YNEQKKPVRLDGIITDITERKKT-EIALQQSEH 168


>gi|17549376|ref|NP_522716.1| hypothetical protein RS05432 [Ralstonia solanacearum GMI1000]
 gi|17431629|emb|CAD18306.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 915

 Score =  526 bits (1354), Expect = e-146,   Method: Composition-based stats.
 Identities = 144/580 (24%), Positives = 269/580 (46%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LAV    + V    +    +        IL +  G + G  
Sbjct: 329 AIQKDATERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRN 388

Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505
           R       +  + +D    +L S +  + G   L   + +     +  W  + I P+   
Sbjct: 389 RFDMMQRVVDEHGKDVALDVLPSKLVRQSGEAILGRIYGLLLKTGELIWARMNIIPIRRH 448

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +    DIT+ K++ + +   A  D LTG+ NR  F+  L + ++ +  D++ 
Sbjct: 449 GDAAPSSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDESR 507

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 508 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 567

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +IA  A  +  ++  P + +     +  SIG A +    I+ S++L++A+ AMY A
Sbjct: 568 VEGKRIAQLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 627

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A +NSEL LVY P   L    IVG EAL+
Sbjct: 628 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 687

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G +S +EF+ +AEE  +I  I  ++L R     + W          + +N+++
Sbjct: 688 RWNSVKLGAVSPAEFIPVAEETGLIVPIGEWVLRRACEQAVEWYQALGY-DFRMAVNLSA 746

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  +++T   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 747 RQFQTGDVVPTIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 806

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S + G       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 807 FGTGYSSLSYLQRFPISNVKIDRSFILGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 866

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+      +LL+    +V
Sbjct: 867 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLAVV 906


>gi|117919912|ref|YP_869104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
 gi|117612244|gb|ABK47698.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. ANA-3]
          Length = 1433

 Score =  526 bits (1354), Expect = e-146,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 259/561 (46%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 873  QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGNLLTF--DLYP 930

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                +F   + + +  + GR   E      DN    M + I  + +  G++  Y+G+ +D
Sbjct: 931  E---SFSNQIRTMLKQQ-GRWASEVEASRGDNSHFHMELTIDAIYDELGELSHYVGVFSD 986

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L  ++     +  +   +MV+D+D +K+
Sbjct: 987  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEITHALMVLDLDNFKR 1041

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  ++ RI  +L     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1042 INDSLGHQIGDQLLKLVSIRIKSILPKNTSIYRLGGDEFAIVLDKTSDISASAAIAGRVI 1101

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++      +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1102 EAFKTMFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1161

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   ++     + Y P + L    + G+EAL++ +HP  G I  ++
Sbjct: 1162 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLIPPND 1221

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     +L + +++
Sbjct: 1222 FIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIES 1280

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    S ++L  +E  V+  PE +  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1281 ILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1340

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1341 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1400

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +      +LL++
Sbjct: 1401 IQGYIFSKAINEIEFTQLLQD 1421



 Score =  116 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +I++L    V + +L      + I    ER  L++ GSGD +WDWDI    +  +     
Sbjct: 726 IILMLFTLFVFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 785

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L            +    IH  +++  R  L+          +  +RV+  D+ + W++
Sbjct: 786 -LEFPRDGHRSGNSDEESNIHPMEQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 844

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
            R + +  +   + LR  G   +I++ K+  E 
Sbjct: 845 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 877


>gi|297539482|ref|YP_003675251.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258829|gb|ADI30674.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera sp. 301]
          Length = 1169

 Score =  526 bits (1354), Expect = e-146,   Method: Composition-based stats.
 Identities = 155/589 (26%), Positives = 255/589 (43%), Gaps = 17/589 (2%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSD--GERQSLAV---LGSGDIVWDWDIVRDRVTTTP 432
             + L+         A   F + +      E   +A      S + +   D     +   P
Sbjct: 586  AIALLEEMSKDISFALDNFDREMQRKAGEESLRIAASVYDTSSEGILITDANNSIIAINP 645

Query: 433  DIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                I G     + G     L    H  D   F+ +         G+ Q +   R  +++
Sbjct: 646  AFTKITGYNLDEVIGRNPRMLSSGRH--DATFFKKMWHEI--NTTGQWQGDIWDRRKNDE 701

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             +   + I  + N +G + R I +  DIT++ ++ + I   A  D LTG+PNRQ F DRL
Sbjct: 702  IYPKRLMINTVYNEDGAVQRRIAMFTDITQKTEAEQLIWKQANFDFLTGLPNRQMFHDRL 761

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               +  +  + NL+  ++ ID+D++K+IND  G  VGD +L     R+ + ++  D L+R
Sbjct: 762  NQEIKKTNRN-NLQLALLFIDLDRFKEINDNFGHDVGDAMLKEAAIRLNKCVRETDTLSR 820

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            L G+ F +IL   N+   I      +   +     L +  + ++AS+G A +     T+ 
Sbjct: 821  LGGDEFTVILGQLNDLSVIERAVQDILNKMTEAFYLGDEVVYISASVGIALYPDDASTNE 880

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIR 729
             +L +A+ AMY AK  G N    F  +  +    R+ +  +L  A E  +L L Y PII 
Sbjct: 881  TLLTSADQAMYAAKQLGRNRYHYFTQAMQKSTQKRMRLTNELRGAQEAGQLRLYYQPIIE 940

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
            L +  I   EALI+W HP  G IS +EF+ IAEE  +I +I  ++     +    WR   
Sbjct: 941  LANNSIHKAEALIRWQHPTRGQISPAEFIPIAEETGLINSIGEWVFHEAVKQASHWRATY 1000

Query: 790  NMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
            +     I IN +     D+ L        + +   S   I +  +E ++M   +     L
Sbjct: 1001 HSE-FQISINKSPVQFRDDTLKYAAWPDQLKEIGLSGQSIVVEITEGMLMDASDLITSKL 1059

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMA 906
               R  G+ + LDDFGT  S LSYL     D +K + S     +     +A+  +II MA
Sbjct: 1060 LAFRDAGVQVALDDFGTGYSSLSYLKKFDIDYLKIDQSFTRNLSPTSADMALCEAIIVMA 1119

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +   +IA+ +        L    CDY Q    + P+  +   +LL E
Sbjct: 1120 HKLGIKVIAEGVETIEQRDLLIAADCDYAQGYLFSRPVPPDEFERLLTE 1168



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 102/335 (30%), Gaps = 26/335 (7%)

Query: 214 RSSMLIPTFAMAWVVL-GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFM 271
           R  + +    +   V+   I +    L+ +V   +     +       L   L+   + +
Sbjct: 118 RDFLWLSVVGILGSVVSAAIGVSTLVLNGMVPKSAAWHNFFNWWQGDMLGILLVTPLILV 177

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +        K   IT + I      F     +      I  IT     ++          
Sbjct: 178 WRQVPYDWIKRERITEAIICFGLSFFAGQVIFIGWFYGIFGITARGYWVFLFVTWAAVRF 237

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAIT------KRLDNDIIQPALVGGLVLIVILI--- 382
             +   ++L+   I + +  +      T        L+  +   AL    +LI ++I   
Sbjct: 238 GRHGALLVLVMTAIQMLLGMVLAVGGATNNQVPVGLLNFWLYMLALTIVGLLIALVIDRV 297

Query: 383 ---GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                 ++Q        SQ +     +  L      D              +  I  + G
Sbjct: 298 KSTESLLLQKNTLFNKISQRVPGVIYQFRL----YPDG------RSCFPFASEAIQEMFG 347

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           ++              IHI D D     +           QYEFRV   +    W +   
Sbjct: 348 ISPLQAKDDAAVAFSNIHIEDYDGVIVSMQQSARTLL-LWQYEFRVVLPNQGVRWRLGES 406

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +P    +G IL + G   DITE+K++ + I   + 
Sbjct: 407 QPEKMEDGSIL-WHGFITDITERKQADDRIKRLSM 440


>gi|330957200|gb|EGH57460.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 639

 Score =  526 bits (1354), Expect = e-146,   Method: Composition-based stats.
 Identities = 151/630 (23%), Positives = 281/630 (44%), Gaps = 15/630 (2%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++      LL   W +   + + +++    RL            L+  V++       
Sbjct: 7   GALRTAVLYGLLSILWFVTGDYLLSVFVEDPARLAFGQQMIGYSWALLSAVMIFIVRDRL 66

Query: 389 HVLATGYFSQGIFSDG-ERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  G  +     +  +R  LA      + + V   D     V        I G  +  
Sbjct: 67  KGIVGGEATFARQQEDYDRLLLAAVVFDSTREGVLVSDADGRIVHVNRAFVDITGYQAEE 126

Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + G     +    H    + +R +  S +    G+   E   R    + +     IR + 
Sbjct: 127 VLGFNPSKFKSGRH--GPEFYRQMYHSLLS--AGQWSGEIWNRRKSGEIYPQWQTIRSIK 182

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G    Y+ + +DIT  K+S + +   A  D LT +PNR    DR++  L  +     
Sbjct: 183 GDDGRARHYVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSA-RSSK 241

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D ++ IND LG  +GD+VL +   R+  L      ++RL G+ F +++ +
Sbjct: 242 RGCALLLVDLDNFRNINDSLGHNIGDEVLKAAAERLKVLSGSDTTVSRLGGDEFALLVKN 301

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
               +  A  A  +  +   P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ 
Sbjct: 302 CTQMVHAAALAQQVINAFKPPYAIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFK 361

Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK+ G      +     +    RV +  +L  A++  EL + Y P+  L    I   EAL
Sbjct: 362 AKNDGREGFALYTEELTAQAQQRVQLASELRQAIKQEELRVFYQPVYDLNTGRICAAEAL 421

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S  EF+ IAE+  +I  I+ ++L    R + +W     +P   + +N++
Sbjct: 422 VRWQHPTRGMVSPGEFIPIAEQNGLIVDIDAWVLNTACRQMQTWLAA-GVPIASVAVNVS 480

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S+     +L   +  ++S+T   P  ++L  +ES VM +PE++   L RLR++G+SL +D
Sbjct: 481 SRLFSRGDLDRQVAQVLSETGLDPVFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAID 540

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I 
Sbjct: 541 DFGTGYSSLLRLKSMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALASSLGMHVLAEGIE 600

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  L   GC   Q    A P+   +I
Sbjct: 601 HASQASFLLSNGCQLGQGYWFARPMAAQAI 630


>gi|91204587|emb|CAJ70815.1| similar to ScrC (sensory box/GGDEF family protein) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 736

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 153/589 (25%), Positives = 268/589 (45%), Gaps = 25/589 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           T IQ  +      + +          V  S DI+   D     +     I   LG     
Sbjct: 135 TKIQREVLNIKMQRHLKKSEVLHRYIVNNSPDIICTIDHEGRVMFINTKIENFLGYKPQE 194

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQF--HWMIIRI 499
           + G + +    +   D +     +   +    G     + E  +   +N F   +  + +
Sbjct: 195 LIGKLYS--EIVSPEDVERLNVFVKEKIRRGSGNYPSDKIEVCLVPKENYFKSRYFELTL 252

Query: 500 RPMSN-------SNGDILR-----YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            P+          NG+I          IA+DITE+K++ E I   A  D LT +PNR SF
Sbjct: 253 FPVELNLLGFQPKNGNISGDKLFGVYAIAHDITERKEAKEYIHFQACHDLLTKLPNRTSF 312

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R    +  +  +D     V+ +D+D++K IND LG AVGD +L S+T+R+   L+  D
Sbjct: 313 EKRGRLAISKARQND-CIVAVLFLDLDRFKIINDSLGHAVGDQLLQSVTQRLESCLRKCD 371

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           IL+R   + F ++L   N        A+ +   +  P  + ++EI    SIG + +    
Sbjct: 372 ILSRFGADEFMLLLPEINAPENARQVALKITDIMHTPFVIGDQEIFGDVSIGISFFPEHG 431

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYH 725
            T  ++++NAE+AMY AK RG   ++ F          R+ ++ DL  A++N+E  +VY 
Sbjct: 432 ETIEQLIQNAEIAMYQAKCRGKKGIQFFDKGMKTSGPHRLAMERDLRRALKNNEFEIVYQ 491

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P I +   +++G EAL++W+HP+ G I  SEF+ +AEE  +I+ +  ++L     ++  W
Sbjct: 492 PQITINTGKVIGFEALVRWNHPEKGKIRPSEFIPVAEETRLIEDLGEWVLHHACCEVREW 551

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             + +   I + INI+   + +    E    ++    +    +++  +ES++M + E   
Sbjct: 552 IKKGHDT-IRLSINISPLQIENPHFVENFVHMLGICQFPGKNMEIELTESILMTDLEHMA 610

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            +L  L K  I++ +DDFG   S LSY+  +P  T+K + S M           ++ +II
Sbjct: 611 QILNHLHKHSITVAIDDFGIGYSSLSYIQKLPIHTLKIDQSFMQSIQNETDESCLVNAII 670

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            M K +    +A+ +     IK L   GCD +Q  +   P      L+ 
Sbjct: 671 AMGKGLHLCTVAEGVETMTQIKYLQNQGCDAVQGYYFGEPRSGEKCLRF 719


>gi|121607371|ref|YP_995178.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Verminephrobacter eiseniae
           EF01-2]
 gi|121552011|gb|ABM56160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Verminephrobacter eiseniae EF01-2]
          Length = 981

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 137/570 (24%), Positives = 248/570 (43%), Gaps = 22/570 (3%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E+  L       S + +   D     V      + I G       G     L  
Sbjct: 419 ERKRSQEQLQLTAQVFDQSSEAIVIADASHRIVRINRAFSRITGYQESEAVGQSVRLLTM 478

Query: 456 IH--IN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN--GDIL 510
                + + D     L      R+ R + E   R  D   +   + +  + + +  G I 
Sbjct: 479 AEAGPDCNADAVYARLA-----RQERWEGESWGRRKDGSGYPQWLSVSSVRDGDANGPIT 533

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             I +  DI+ Q+++ E I   A  D LT +PNR    +R    +         +  ++ 
Sbjct: 534 HSITLFRDISLQREAQERIQRLAHFDPLTDLPNRVLLAERTQRQIAQEQARGG-QLALLF 592

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +ND LG  +GD +LV++ RR+  L+   D ++RL G+ F ++L    ++   
Sbjct: 593 LDLDHFKNVNDSLGHRIGDILLVAVARRLQSLIGPQDTVSRLGGDEFLLLLP-ATSAAHA 651

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A A+  ++A P  +   E++ T S+G A   +   +   + + A+ AMY AK  G N
Sbjct: 652 AKVASALLTAVAQPFQIDPYELSTTLSVGIAMCPADGESFDTLYQRADAAMYSAKQSGRN 711

Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F           + I+  L  A+E  +  L Y P + L   ++VG EAL++W HP+
Sbjct: 712 RYGFFTADLQARTARALQIENALRRALERQQFELHYQPQVSLGTGQVVGAEALLRWHHPE 771

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLD 807
            G ++ +EF+ +AE    I A+  ++L   ARD   W D     P+  + +N+++     
Sbjct: 772 LGVVAPAEFIPVAENSGQIVALGEWVLHTAARDAKRWLDM--QLPLRAVSVNLSAVQFRH 829

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L E +   + +      R++L  +E   + +P  +  ++ +L   G+ L++DDFGT  
Sbjct: 830 PQLPEMVTRCLQQAGLPARRLELELTEGAAVDDPVAALAMMDQLHDRGVRLSMDDFGTGY 889

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L       +K + S +    +     AI+ +II MA+ +     A+ +  +  ++
Sbjct: 890 SSLSCLKRFQIYKLKIDQSFVRDLDDDANDRAIVSAIIRMAQALGMQTTAEGVETDGQLQ 949

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L   GCD  Q    + PL  ++    L+ 
Sbjct: 950 FLRAQGCDEGQGYLFSRPLPADAFEAYLRA 979


>gi|77920151|ref|YP_357966.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77546234|gb|ABA89796.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pelobacter carbinolicus DSM 2380]
          Length = 1061

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 168/615 (27%), Positives = 278/615 (45%), Gaps = 17/615 (2%)

Query: 354  LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER------- 406
            +  A T   ++         G  + V L+   +         +        ER       
Sbjct: 446  MAHATTADAEHREWTYTSKQGEHISVSLVITAMRSPAHGIVGYLGIAQDITERKRQENTL 505

Query: 407  --QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
               S  V  S   V   D   +     P    I G +   +HG     L        + +
Sbjct: 506  RKLSQVVEQSPTAVILTDPQGNIEYANPKFTQITGYSLTEVHGKNPRLLKS-GETSAEEY 564

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            R +  +    R      EF  +  D    W    I P+ N  GDI  ++ I  DIT++K+
Sbjct: 565  RDLWTTITAGR--EWHGEFHNKRKDGSLFWEHASISPVRNDAGDISHFLAIKEDITDRKR 622

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
              E +   A  DNLTG+ NR    DRL   +  +     L    +++D+D++K IND LG
Sbjct: 623  YEEQLQHLATHDNLTGLANRALLQDRLEQSILFAKRSGRLVAA-LLLDLDRFKIINDSLG 681

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             + GD +L     R+ E ++  D +ARL G+ F I+L    N   +   A  +   I  P
Sbjct: 682  HSFGDRLLQIAADRLRESVRGADTVARLGGDEFVILLAEVANEEDVGKVAKKILDRITAP 741

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSD 703
              + +REITVTAS+G + +         +++NA++AMY AK  G      +  ++    +
Sbjct: 742  FQIADREITVTASLGISIYPQDGEDEETLIRNADIAMYQAKEEGNAFRLYAPEMNIVVHE 801

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             + ++ DL  A++  EL L Y P I L   +I G EAL++W HP  G I+   F+ +AEE
Sbjct: 802  AMEMETDLRRALDRGELLLHYQPKIDLDSGKITGAEALVRWQHPVRGMIAPGMFIPLAEE 861

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  ++LE I   I SW+ Q   P + I  N++++   ++EL   +Q ++  T  
Sbjct: 862  TGLILPIGEWVLENICLQIKSWQTQ-GFPLVPIAANLSARQFRNDELIATIQRILQDTGL 920

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             P  ++L  +ES++M N + +   +  L  +G+SL LDDFGT  S L+YL   P D +K 
Sbjct: 921  PPHLLELELTESMIMRNVQTAAETMQELNALGVSLALDDFGTGYSSLNYLRRFPVDCLKI 980

Query: 884  NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S ++         A+  SII +A ++    +A+ +  E  ++ L +  CD  Q    +
Sbjct: 981  DRSFISDVADDPSAAAVATSIIAIAHSLGLQAVAEGVETEEQLEFLRQCACDSYQGYLYS 1040

Query: 942  SPLGFNSILKLLKER 956
            +PL       +L++ 
Sbjct: 1041 APLAVEEFTAMLRQE 1055



 Score =  135 bits (339), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 122/328 (37%), Gaps = 12/328 (3%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
            ++ +     A ++L    I     S+        + I    S   LS  L++  + Y+ 
Sbjct: 2   DNVFLALIQNAALLLAMAFIYDMMTSRYRLKHRLIVQICVGISLGLLSIILMLSPWQYIP 61

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI----ARITLASIVLYYTYFIIYHG 330
              +  +   +  SG+   A+   ++              A      ++       IY  
Sbjct: 62  GIVFDTRSVLLGISGLFFGAVATSVAMLMAAAFRLFQGGAAAWIGVGVIFASGIVGIYWK 121

Query: 331 MKGYERA----VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL---IG 383
            +  + A       +  + ++    +  +M +        +   +   ++LI  L   + 
Sbjct: 122 YRNRKSAEQLTWWQLYGFGVLVHLIMLAFMLLLPWQTAFRVLHHISLPVLLIYPLATAML 181

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +++         S+ + +  ER  +A+  S   ++D ++    +    + A ILG    
Sbjct: 182 GSLMLKRQRRDQISKALQTSEERLRMALKASKQGLYDLNVQSGNMIVNAEYALILGYDPQ 241

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
           +      +W+  +H  DR     +  +++  +    + EFR R    Q+ W++   + + 
Sbjct: 242 NFRETNGDWIARMHPEDRSAVLAVYRNYLAGKTEEFRAEFRQRTRCGQWKWVLSMGKIVE 301

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +++G  LR +G  +DITE+++S E   
Sbjct: 302 RDTHGQPLRMLGTFSDITERRQSEEQTR 329



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 16/163 (9%)

Query: 386 VIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASG 443
            +Q +      +        R  +  +  + ++ +   D              +LG ++ 
Sbjct: 348 TLQRLFEEQTLASAEIERTSRLLAEVLNAASEVSIIATDPRGIITVFNRGAEKMLGYSAE 407

Query: 444 SMHGPIRNWLPYIHIN----------DRDNFRTILDSFVGYRRGRLQYEFR---VRAADN 490
            M G     + ++             DR         ++ +       E R     +   
Sbjct: 408 EMVGRETPTVFHLASELQTRYTELGADRGTPIKDFADYMAH-ATTADAEHREWTYTSKQG 466

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   + + I  M +    I+ Y+GIA DITE+K+    +   +
Sbjct: 467 EHISVSLVITAMRSPAHGIVGYLGIAQDITERKRQENTLRKLS 509


>gi|113969753|ref|YP_733546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
 gi|113884437|gb|ABI38489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-4]
          Length = 1430

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 127/561 (22%), Positives = 258/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 870  QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGNLLTF--DLYP 927

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                +F   + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 928  E---SFTNQIRTMLKQQ-GRWASEVEASRGDKSHFHMELTIDAIYDELGELSHYVGVFSD 983

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L  ++     +  +   +MV+D+D +K+
Sbjct: 984  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEITHALMVLDLDNFKR 1038

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  ++ RI  ++     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1039 INDSLGHQIGDQLLKLVSVRIKSVVPKNTSIYRLGGDEFAIVLDKTSDISACAAIAGRVI 1098

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++      +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1099 EAFKTIFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1158

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   ++     + Y P + L    + G+EAL++ +HP  G +  ++
Sbjct: 1159 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLVPPND 1218

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     +L + ++A
Sbjct: 1219 FIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIEA 1277

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE +  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1278 ILRLTQLPAAHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1337

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1338 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1397

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +      +LL++
Sbjct: 1398 IQGYIFSKAINETEFTQLLQD 1418



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +I++L    + + +L      + I    ER  L++ GSGD +WDWDI    +  +     
Sbjct: 723 IILMLFSLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 782

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L            +    IH  D++  R  L+          +  +RV+  D+ + W++
Sbjct: 783 -LEFPRDGHRSGNSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 841

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
            R + +  +   + LR  G   +I++ K+  E 
Sbjct: 842 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 874


>gi|124514573|gb|EAY56085.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 699

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 150/585 (25%), Positives = 278/585 (47%), Gaps = 9/585 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             I+ +       + +  + E+  + +   GD V   D         P    + G  SG 
Sbjct: 115 VAIRDITRRRQLMRDLRHEKEQWFVTLKSIGDAVITTDENSRVTYVNPIAEELTGWQSGE 174

Query: 445 MHGPIRNWLPYIHIND-RDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            HG     + +I     R      ++  +       L     +   D +   +     P+
Sbjct: 175 AHGLPIGQVFHIVNEYTRTRASNPVERALRDGTIVGLANHTLLLGRDGREWSIEDSAAPI 234

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +    I   + +  D++E+++    I   A  D LTG+PNR  F DRL   +  +    
Sbjct: 235 KDDEETIRGCVIVFRDVSEKRRLERQIAYQATHDALTGLPNRHLFQDRLVRTIARAHRSG 294

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    ++ IDID +K +ND LG   GD VLV L +R+  +++  D +ARL G+ F +IL 
Sbjct: 295 H-SFALLYIDIDHFKNVNDRLGHPFGDRVLVELGQRLKGVVRETDTVARLGGDEFAVILE 353

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             ++  +       +    ++P  + E  + +T SIG A +      ++ ++KNA++A++
Sbjct: 354 EVSDRNEGMVLGRRLMHEASLPFRIDEARVDLTVSIGVAQYPEDGTDATLLVKNADIALF 413

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           H K  G N ++ F     R+ +    I+ +L  A++  E +L+Y PI+ L   + VG+EA
Sbjct: 414 HVKGDGRNSIQFFSEEMNRTVQKRIVIENELREALDRDEFFLLYQPIVDLERGKAVGVEA 473

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W H     +   EF+ +AEE  +I  +  ++LE   R    W DQ   P   + +N+
Sbjct: 474 LLRWRHGDEARLP-EEFVPVAEEAGLIVPVGRWVLETALRQTRRWLDQGFAPG-RVTVNL 531

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A+K L   E    +++L+++T    S ++L  +E  ++    ++R  L ++R++G+ +++
Sbjct: 532 AAKQLHSLEFAAFLESLLAETRVEASLLELEVTEGTLLHRDHQTRETLSKIREMGVRISI 591

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL + P DT+K + S +TG  S     AI+R+I+ +AK++   ++A+ I
Sbjct: 592 DDFGTGDSSLNYLRHFPVDTLKIDRSFLTGFPSNHYDRAIVRAILALAKSLSLDVVAEGI 651

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             E   + L   GC  +Q    + P+  + I        P   ++
Sbjct: 652 EREEQARFLRDDGCVLVQGYLYSHPVSPDEIPPFFGRTGPRSGSS 696



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 2/132 (1%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F         +    D V   D+ R  +   P  + +   +S    G    +L Y   +D
Sbjct: 4   FESVFEHQFILQAMEDAVIATDLERHVLWANPAFSKLFQFSSEETIGKTTAFL-YADPSD 62

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +  +  +            YE   R  D Q  W   R   ++N  GD + +     DIT
Sbjct: 63  YET-QGRIRYHASAPSDPRPYEVLYRRKDGQTFWGEARGATITNDAGDRIGFTVAIRDIT 121

Query: 521 EQKKSLEGILCN 532
            +++ +  +   
Sbjct: 122 RRRQLMRDLRHE 133


>gi|114046982|ref|YP_737532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
 gi|113888424|gb|ABI42475.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. MR-7]
          Length = 1430

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 127/561 (22%), Positives = 258/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 870  QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRTDFIGNLLTF--DLYP 927

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                +F   + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 928  E---SFTNQIRTMLKQQ-GRWASEVEASRGDKSHFHMELTIDAIYDELGELSHYVGVFSD 983

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L  ++     +  +   +MV+D+D +K+
Sbjct: 984  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEITHALMVLDLDNFKR 1038

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  ++ RI  ++     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1039 INDSLGHQIGDQLLKLVSVRIKSVVPKNTSIYRLGGDEFAIVLDKTSDISACAAIAGRVI 1098

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++      +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1099 EAFKTIFEIGNEQLVLGVSIGIVFYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1158

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   ++     + Y P + L    + G+EAL++ +HP  G +  ++
Sbjct: 1159 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLKSGHVAGMEALVRLNHPTRGLVPPND 1218

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     +L + ++A
Sbjct: 1219 FIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIEA 1277

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE +  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1278 ILRLTQLPAAHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1337

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1338 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1397

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +      +LL++
Sbjct: 1398 IQGYIFSKAINETEFTQLLQD 1418



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 2/153 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +I++L    + + +L      + I    ER  L++ GSGD +WDWDI    +  +     
Sbjct: 723 IILMLFSLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 782

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L            +    IH  D++  R  L+          +  +RV+  D+ + W++
Sbjct: 783 -LEFPRDGHRSGNSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 841

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
            R + +  +   + LR  G   +I++ K+  E 
Sbjct: 842 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 874


>gi|326796787|ref|YP_004314607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326547551|gb|ADZ92771.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 985

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 144/582 (24%), Positives = 266/582 (45%), Gaps = 20/582 (3%)

Query: 389 HVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++      ++ I ++ E R S     + D +   D     +        I G +   ++G
Sbjct: 409 YLFLVRDVTERIKNEAELRISAIAFETQDAILITDQHNRIIRVNNAFEAITGYSESEVYG 468

Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                     H  DR+ +R +  S      G  + E   R  D       + I  + +  
Sbjct: 469 KNPAIISSGRH--DRNFYRKLYQSL--NNIGHWEGEIWNRKKDGTVFPEWLYITAIKDEE 524

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +L Y+    DIT+ K + + I    + D LT +PN+  FL+ L   LD+ +     R 
Sbjct: 525 ERLLHYVATFRDITQDKNNQQRIEQLNYYDALTRLPNKTLFLEELEHRLDVMSEIRYRRS 584

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--- 623
            ++ +D+D +K +ND  G   GD +L  +  R+ ++++  D +ARLS + F I+L     
Sbjct: 585 AILYLDLDNFKDLNDYYGHKQGDLLLKQVASRLVDIVRPQDTVARLSADNFVILLEDADV 644

Query: 624 ----ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNA 677
               E  S +    A  +   +  P      E+ +TASIG   + +   + TS +++K A
Sbjct: 645 SVNPERASYRAKHVATKILDELKHPFVPGAHELVITASIGMTEFGADTPEHTSEDIVKQA 704

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735
           E+AMY AK  G      ++          +  +  L  A+   +  L Y P   + ++++
Sbjct: 705 EMAMYEAKQAGRAQSCFYQPKMHERVVQRVYFETSLREALSKEQFSLHYQPQFDV-NKKL 763

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EALI+W+HP+ G +   EF+  AEE  +I  I  ++L +  +    W        I 
Sbjct: 764 VGVEALIRWNHPENGLVPPGEFIPFAEESKLIIKIGEWVLMKACQVKADWLKHDAFRDIN 823

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + IN+++     +   E ++  + ++  +P+ I+L  +ES+++ + +     +  L+ +G
Sbjct: 824 MSINVSALQFSQDNFVEQVRHALDQSGVNPNTIELELTESMLVNDQDDVIRKMQSLKALG 883

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + ++LDDFGT  S LSYL  +P D +K + S ++  +E      I  SII +  N+   +
Sbjct: 884 VLISLDDFGTGYSSLSYLTRLPIDQLKIDQSFVSSFSEGSRESTIAASIINIGHNLNMEV 943

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           IA+ +  +   + L   GCD  Q   +A P+    +L LL +
Sbjct: 944 IAEGVEQQSQFEWLKSQGCDLFQGYGLARPMPEEDLLSLLSQ 985



 Score = 39.9 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           L      +F+   G W++             +V  L  I  LI     +  +      Q 
Sbjct: 236 LPGTRWFLFVSPKGTWVSKQTTYSLGFAVAFVVMLLSGISYLIARKFFERSVQASLVEQK 295

Query: 400 IFSDG---ERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATI--LGLASGSMHGPIRNW 452
                   ER S  +    D + + +          + +   +  L L  G       + 
Sbjct: 296 TKEAEITLERLSNTLDAIPDYLVEVNDEGVVAENHYSSERELMKWLPLHPGEWVVDCLSE 355

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN--GDIL 510
              +        + +  +F+      L +   +   D    W  +     +  +  G   
Sbjct: 356 ESML-----AWGQAMKTAFLDGVSTGLSFRVEL---DEDEKWFELSAVYTAPDDLKGRAA 407

Query: 511 RYIGIANDITEQKKSLEGILCNA----FQDN--LTGIPNR 544
            Y+ +  D+TE+ K+   +  +A     QD   +T   NR
Sbjct: 408 FYLFLVRDVTERIKNEAELRISAIAFETQDAILITDQHNR 447


>gi|34452029|gb|AAQ72480.1| sensory box/GGDEF family protein [Bacillus cereus]
          Length = 607

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 149/575 (25%), Positives = 274/575 (47%), Gaps = 11/575 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             Q        +  +    +R +       D V+  ++      +     ++    +   
Sbjct: 37  TTQLEGEVEEGASALSKSEQRYTSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYC 94

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                + L +I   D D  +  L      R   L  E R +  +  ++++ I + P    
Sbjct: 95  EVESYSLLHFIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-I 151

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T  N  
Sbjct: 152 NKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAN-D 210

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VM +D+D++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    
Sbjct: 211 VAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMY 270

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +    A  A  +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK
Sbjct: 271 SEKSAAFIAEQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAK 330

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+
Sbjct: 331 ANGKNRFVFFSKEMSIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIR 390

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++  
Sbjct: 391 WKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVV 449

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDF
Sbjct: 450 QFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDF 509

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E
Sbjct: 510 GTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETE 569

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              K L    CD+IQ   ++ P+    + +LL ++
Sbjct: 570 EQWKFLYEQNCDHIQGFFISKPVSSKDVWRLLHKK 604


>gi|91790100|ref|YP_551052.1| diguanylate cyclase/phosphodiesterase [Polaromonas sp. JS666]
 gi|91699325|gb|ABE46154.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Polaromonas sp. JS666]
          Length = 861

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 137/546 (25%), Positives = 247/546 (45%), Gaps = 19/546 (3%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             +          G             L  P    ++ D            R   +Q E 
Sbjct: 322 RIIFANNAFERHTGYGRNEALDQSPRLLCGPLTQRSELDRINKAFL-----RGEPVQAEL 376

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                D +  WM + I P+++  G     ++ +  DIT +K +   I+  AF D LT +P
Sbjct: 377 ITYRKDGKHFWMEVDIVPVADDAGVFFTHWVAVGRDITRRKVAESEIMHLAFYDPLTQLP 436

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ  +DRL   L            +M ID+D +K +ND LG   GD +L  +  R+   
Sbjct: 437 NRQLLMDRLQQALAHPPQLPR-EGALMFIDMDNFKTLNDTLGHHKGDLLLQQVAERLTGC 495

Query: 603 LKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++  D +ARL G+ F ++L +  +       +       +  +++ P  L   +   T S
Sbjct: 496 VRTADTVARLGGDEFVVMLENLGHDPREAGARARAVGEQILAALSEPYLLAGYQHYSTCS 555

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG  S+  +  +  ++LK A+LAMY AK  G N +  F      +      ++ DL   +
Sbjct: 556 IGVTSFNQNHDSIGDLLKQADLAMYQAKTAGRNTLCFFDPVMQAAVSASAALQSDLRQGL 615

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              +  L Y P +   D  ++G EAL++W+HP  G +  ++F+ +AEE  +I  +  ++L
Sbjct: 616 REKQFLLYYQPQV-GRDGRMMGAEALLRWNHPVRGMVPPADFIPVAEESGLILPLGQWVL 674

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E   R + +W  +     + I +N++ +     E  + + A ++ T  SP ++KL  +ES
Sbjct: 675 ETACRQLGAWAQRPETAALSISVNVSVRQFRHPEFVDLVMAALNDTKVSPHKLKLELTES 734

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           ++  + E +   + +L+ +G++L++DDFG   S LS L  +P D +K + S +       
Sbjct: 735 LLADDMEITIGKMAKLKAMGVTLSIDDFGMGYSSLSCLKRLPLDQLKIDKSFVADILRDP 794

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI R+II +A+++   ++A+ +  E   + L R GC+  Q      PL   ++   +
Sbjct: 795 NDAAIARTIIGLAQSLGLGVVAEGVETEAQREFLYRQGCESYQGYLFCKPLPIEALEAFM 854

Query: 954 KERFPL 959
           K   P 
Sbjct: 855 KNPAPG 860



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 76/281 (27%), Gaps = 30/281 (10%)

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIA-ILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           FL       R  A+   ++ + +  +       S        +   +         T   
Sbjct: 31  FLRETDRLTRLAARSCGVSIAMVVVLEDGQAVFSAGTGFAAPAREGLVTLCAATLDTPLC 90

Query: 327 IYHGMKGYERAVLLIPAWILI----FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                  Y   +     + ++     +  +   M    R  +   +  L     L+   +
Sbjct: 91  APTLPAPYAPGIRFYRGFQMVGEDGALLGLLAVMDTLPRSLSREQEEGLQTLARLLAGQL 150

Query: 383 GFTVIQHVLAT---------GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
                +H L               +       R S+ +    +  +  D        + +
Sbjct: 151 ELRQQRHALDAQRQHLGTTMRQTQEDAHRLATRLSITLENISEGFYTLDPEWRFTYLSRE 210

Query: 434 IATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
              +LG     + G    + +   I+      F   + + V   + + + E      D  
Sbjct: 211 GERLLGRPGTELLGKSIWKEFPGIIN----TAFGEQIGAAVAGNQ-QAELEAHFAPMD-- 263

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             W  +R  P  +             D++E++K+ E ++  
Sbjct: 264 -RWFEVRAYPYPD------GVAIYFRDVSERRKAREQLMLL 297


>gi|24374604|ref|NP_718647.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24349221|gb|AAN56091.1|AE015745_3 sensory box protein [Shewanella oneidensis MR-1]
          Length = 1422

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 255/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 862  QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCRISQRNRSDFIGNLLTFE--LYP 919

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                +F   + + +  + GR   E      DN    M + I  + +  G++  Y+G+ +D
Sbjct: 920  E---SFSNQIRTMLKQQ-GRWASEVEANRGDNSHFHMELTIDAIYDELGELSHYVGVFSD 975

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L  ++     +  +   +MV+D+D +K+
Sbjct: 976  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV-----NKEINHALMVLDLDNFKR 1030

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD +L  ++ RI   +     + RL G+ F I+L   ++ L  A  A  + 
Sbjct: 1031 INDSLGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIV 1090

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +      +   ++ +  S+G   +   +     +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1091 DAFNTVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1150

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                    ++ +  +   ++     + Y P + L    + G+EAL++ +HP  G I  ++
Sbjct: 1151 LNEHAIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPND 1210

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     +L + +++
Sbjct: 1211 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGLFKG-RVAVNLSSRQFALPDLQQRIES 1269

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    S ++L  +E  V+  PE +  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1270 ILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1329

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1330 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1389

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +       LL+E
Sbjct: 1390 IQGYIFSKAINEAEFTLLLQE 1410



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 2/155 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           LI + +   + + +L      + I    ER  L++ GSGD +WDWDI    +  +     
Sbjct: 715 LITMFLSLFIFKAILRKREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 774

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L           R+    IH  D++  R  L+          +  +RV+  D+ + W++
Sbjct: 775 -LEFPRDGHRSGNRDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWIL 833

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            R + +  +   + LR  G   +I++ K+  E + 
Sbjct: 834 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 868


>gi|119944951|ref|YP_942631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Psychromonas ingrahamii 37]
 gi|119863555|gb|ABM03032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Psychromonas ingrahamii 37]
          Length = 1014

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 145/562 (25%), Positives = 258/562 (45%), Gaps = 13/562 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               +  S+    S + +   D   + +TT P    + G ++  + G    ++     +  
Sbjct: 455  ESMQLASMVYQNSREAMTVTDSNGNIITTNPAFTEMTGYSADEITGKSHTFIVSKQQD-- 512

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                  ++  +    G  + E   R  + + +  ++ I  + N +  + R +   +DITE
Sbjct: 513  KRVYQRMELAL-NSTGHWRGEVSCRHKNGENYMALLGINSIYNEDRSVHRRVAQFSDITE 571

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +KKS + I   A  DNLTG+ NRQ F D+L    + +     L   ++ +D+D++K +ND
Sbjct: 572  RKKSEKIIWKQANFDNLTGLSNRQMFHDQLLHEKNKAQRR-GLNVGLLFLDLDRFKAVND 630

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             LG  +GD +L+ + +R+   ++  D+++R  G+ F +I+    N+  +   A  +   +
Sbjct: 631  TLGHNMGDQLLIDVAQRLRNCVRKRDLVSRFGGDEFTVIIGGLKNTQSVERVAQKILCEL 690

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            A P  L E+ + +T SIG   +      +  +LKNA+ AMY AK +G N    F  S   
Sbjct: 691  AEPFLLGEQNVYITPSIGITFYPKDGEATEMLLKNADQAMYSAKEKGRNCYHYFTNSMQE 750

Query: 702  SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                   +  DL  A++ ++L L Y PI+ L   +I   EALI+W HP+ G +S +EF+ 
Sbjct: 751  QVERGGQLANDLRYALKKNQLELYYQPIVALGTGQIRKAEALIRWHHPELGMVSPAEFIP 810

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD--NELCEGMQAL 817
            IAEE   I  I  ++  + A  +  WR +       + IN +     +  +++   ++ L
Sbjct: 811  IAEETGTIVEIGDWVFRQAADQVAHWRREY-QNDFQVSINKSPVQFREGGSDITSWLEHL 869

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++        + +  +E +++    R     L   R  GI ++LDDFGT  S +SYL   
Sbjct: 870  LA-LGLPGQAVVIEITEGLLLDGSSRIVIDKLLAFRDSGIEVSLDDFGTGYSSMSYLRKF 928

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S +         + +  +II MA  +   +IA+ I  E   + L+  GCDY
Sbjct: 929  HIDNLKIDQSFVRNLKVDSDDMILCEAIIIMAHKLGMQVIAEGIENEEQRRLLSAAGCDY 988

Query: 935  IQDSHVASPLGFNSILKLLKER 956
             Q    A PL       LL   
Sbjct: 989  GQGYLFAKPLPEKDFSCLLLRH 1010



 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 1/150 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                I       +    I    E+    + GS    WDW+I  + V      A +LG  
Sbjct: 309 FVIAGILDSSERKHAEDKIRGRKEQLLSVLSGSELGFWDWNIEANTVHRNARWAEMLGYR 368

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       L  +H ND       +   +  R  + + E+R+R    ++ W++   + 
Sbjct: 369 FEDIQNDTSINLDSVHPNDCGRVWQSVTDHLEGRTAQHKIEYRMRTRQGEYKWILDCAKI 428

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           +    +   LR  G   DIT++K + E + 
Sbjct: 429 VNYGEDQQPLRMSGTHTDITKRKLAEESMQ 458



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 96/333 (28%), Gaps = 21/333 (6%)

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258
           A LLA+F        R+  +   +   +  +    I    +        G   I      
Sbjct: 16  ALLLAMFFIYDMAAFRNRTVFGFYWAIFTGIALGLIGIIIMLTPWEYAPG---IIVDSRA 72

Query: 259 IALSSSLIIF-LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLAS 317
           + L  S + F     L      A +      G A I +L  ++     +     R    S
Sbjct: 73  VLLGISGLFFGTIPTLIAMVITATLRLFQGGGAAVIGVLVIITSGTLGIAWRYYRPHPLS 132

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
            + +   ++    + G   A+  I  W +       + + +                  L
Sbjct: 133 ELSFREIYLFGVIIHGVMLALTFIFPWEMTLAVLSNISLPVLLLYP-------------L 179

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           I  L+G   +Q +      +  +                 +      +  +   P +  I
Sbjct: 180 ITALLGMLFVQRLRRNQS-TDALKESEFLFRSQFDLGSIGIAITYPGKGWLRVNPRLCEI 238

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG     +   + NW    H +DR       D  +         + R    D +  ++ +
Sbjct: 239 LGYREEELL--LLNWSELTHPDDRHLDLYQYDQMLTGEEDGYSLDKRFIRKDGESVYVHM 296

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            I      +G +   I    D +E+K + + I 
Sbjct: 297 TISCYR-VDGAVQFVIAGILDSSERKHAEDKIR 328


>gi|91775467|ref|YP_545223.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91709454|gb|ABE49382.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Methylobacillus flagellatus KT]
          Length = 722

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 132/560 (23%), Positives = 256/560 (45%), Gaps = 17/560 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457
            +  + +   +A+  +  IV   D             +I       + G     +    H
Sbjct: 161 ALIKEHDELKIALD-AHAIVAVTDARGVITRVNDKFCSISQYGREELVGSTHRIVNSGHH 219

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              ++ F+ +  +    +      E   RA D   +W+   I P    +G  ++YI I  
Sbjct: 220 P--KEFFQHLWRTVSSGQ--VWNGEVCNRAKDGTLYWVHTTIVPFLGEDGVPVQYIAIRA 275

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT++K   + +   A  D+LTG+PNR+  ++RL  ++  +    +    VM +D+D +K
Sbjct: 276 DITQRKILEQSVQRMALYDDLTGLPNRRLMVERL-QMIREACVRSHRHGAVMFLDLDNFK 334

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIAD 632
           +IND  G   GD +L  + +R+ E ++  D +AR  G+ F I+L   +        +  +
Sbjct: 335 EINDTHGHEQGDRLLKQVGQRLRENIRQVDTVARAGGDEFIILLADLDEDPAKATAQAYN 394

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +R +++ P       +  + S+G   ++      +E+ K+A++A+Y AK +G N +
Sbjct: 395 VAEKLRNALSTPYIFNRIVLHTSTSVGIVMFSDKAKPKTELFKHADMALYRAKAQGKNRI 454

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  S      +   +  DL  A++  E  L + P++   D +++G EALI+W HP  G
Sbjct: 455 SMFDPSLQAEVLEYASLLADLRQALQRDEFRLYFQPVVN-RDGKVIGHEALIRWIHPVRG 513

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   +F+ +AE+  +I+ I  ++L    + +  W + A      + +N+++K   D + 
Sbjct: 514 MVLPGQFIPVAEQTGLIQEIGQWVLSMACKQLNVWSEDAVKSQWTLSVNVSAKQFRDMDF 573

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   I ++   P R+ L  +ES+   +  ++   +  L+ IG+  ++DDFGT  S L
Sbjct: 574 VGKVHDAIRQSGADPKRLWLELTESMFHTDIVQTIEKMRALQDIGVHFSMDDFGTGYSSL 633

Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L  +P D +K + S +          AI+R+I+ +A  +  T++A+ I        L 
Sbjct: 634 SVLKLLPLDQLKIDRSFVRDVIDDPNDAAIVRTILALAGILNLTVVAEGIESSEQFDFLE 693

Query: 929 RMGCDYIQDSHVASPLGFNS 948
           + GC   Q      P+  + 
Sbjct: 694 QHGCQAFQGYFFGKPVPMDE 713



 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 11/153 (7%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +     +    +         +D+               G       G    
Sbjct: 22  RLVQVETALRKQDVQLRTILDNLPLCAICFDVEFCCQFVNLSFCDDFGRTPEQWAGAR-- 79

Query: 452 WLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN----SN 506
            L  +   D        +   +  ++  +   F VR A+++  +    I          +
Sbjct: 80  -LASMMPEDWLRHLEPAMRQALSGKQANIH--FAVRGANDEILYKNALIISRRGMTDMPH 136

Query: 507 GDILRYIGIANDITEQKKSLEGILCN-AFQDNL 538
           G     + +  D TEQ+   + ++      D L
Sbjct: 137 GSTTGVLVLVTDCTEQELMSQKLMALIKEHDEL 169


>gi|326317860|ref|YP_004235532.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374696|gb|ADX46965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1083

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 141/597 (23%), Positives = 265/597 (44%), Gaps = 14/597 (2%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            PA        +   G   +    A     + +    E  +     S + +   +  +  V
Sbjct: 474  PAWAVLSARRLRFQGRDAMLTAFAPINVLKVMEQRLELWAKVFEASSEGIIIMNAAQRIV 533

Query: 429  TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
            +               + G     L      +     TI  +     +   Q E R R  
Sbjct: 534  SVNQAFCRSTHYDFYEVIGEQLGML-LDAPGESAPGETIARALAD--KESWQGEVRFRRR 590

Query: 489  DNQFH--WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              + +  W+++         G +  +IGIA DIT++K++ E I   A  D LT +PNR  
Sbjct: 591  SGESYPAWLMVSAVREGGKGGAVTNHIGIAIDITDRKRNEERIRFLAHHDVLTELPNRSL 650

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             + RL   L+ +A     +  V+ ID+D++K IND LG  +GD +L S+  R+ + ++  
Sbjct: 651  CVQRLQAGLEQAARTGE-QLAVLFIDLDRFKAINDTLGHHIGDGLLRSVAARLVQSVREG 709

Query: 607  DILARLSGNRFGIILISENNSLKIADFAI-AMRKSIAMPINLLEREITVTASIGFASWTS 665
            D ++RL G+ F I++     + ++       +   I     +   E++V+ S+G A +  
Sbjct: 710  DTVSRLGGDEFVIVMRQVEGAQQVLRVVEERLIPLIRQSHPVEAHELSVSCSVGIAVYPE 769

Query: 666  SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723
                  E+++ A+ AMY AK  G +    +          R  +++ L  A+E  E  L 
Sbjct: 770  DGADLDELMRRADAAMYEAKTAGRDMARLYSLETDRRVQARQAMEQSLRRALERREFALH 829

Query: 724  YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
            Y P +        GLEAL++W HP  G +   EF+ IAEE  +I+AI  ++L++      
Sbjct: 830  YQPRMSARTGMPTGLEALLRWRHPSLGEVLPGEFIPIAEEAGLIRAIGAWVLDQACAQWA 889

Query: 784  SWRDQ---ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +WR       +  + + +N+++  L D  L   + AL+++       ++L  +ES +M N
Sbjct: 890  AWRASEAGGGLAGLPVSVNLSAAQLADPLLVPDIAALLARHGMPARCLELEITESQLMDN 949

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
               ++  L  L+++G+ L++DDFGT  S L+YL     D +K + S +     +   +AI
Sbjct: 950  AGVAQGQLAALKQLGVQLSIDDFGTGYSSLAYLKRFAIDKLKVDKSFIRDMLASPADMAI 1009

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             R+II + + +   ++A+ +     ++ L  + CD +Q    +  L   ++ + + E
Sbjct: 1010 TRAIIGLGRTLGLQVVAEGVEDAATLRMLESLDCDEVQGYLFSRALPPEALQRWVAE 1066


>gi|323703978|ref|ZP_08115604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531054|gb|EGB20967.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 631

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 256/575 (44%), Gaps = 8/575 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           V  ++     + Q+        + +     R    +     +    D     +       
Sbjct: 59  VAELVAAEEELRQNYELLQEREKRLAESERRFRTMLENVQLLAVVLDQQGRILFINDFFL 118

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            + G     + G    +  +I    ++  R +   F+   R  +  +  +     +   +
Sbjct: 119 KLTGWQCQEVLGR-DYFSLFILPAKQEQMRAMFQQFINEGRIEVNLKNHIVTRQGEQRLI 177

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                 + +  G +     I  DITE++   E +   A+ D LTG+PNR S  ++L   +
Sbjct: 178 YWNNTLLLDEQGGVAGIASIGEDITERQLIQEKVKFLAYHDVLTGLPNRLSLTEQLAREI 237

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +    + +  V+ +D+D++K  ND LG   GD++L  +  R+  LL    IL RL G+
Sbjct: 238 KRAERLGS-QLAVLFLDLDRFKVTNDTLGHTAGDELLKQVGERLLGLLNHHGILTRLGGD 296

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F IIL       +  + A  + ++   P N+L  ++ VT SIG A + +       +LK
Sbjct: 297 EFIIILPDLTGLPQAVEIAEGLLQAFQRPFNVLGSQLHVTTSIGIAVFPADGTDVQTLLK 356

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733
           NA+LAMY AK +G N+ + +      + R  ++ +  L   +E  +  L Y PI+     
Sbjct: 357 NADLAMYRAKGKGRNNYQLYTPEMQETVRRQLELEEALRQGLERQQFELFYQPIVDCQ-G 415

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +V  EAL++W  P    IS +EF+ +AEE  +I  ++ ++L+   R +  W+       
Sbjct: 416 RVVYREALLRWRRPGGEIISPAEFIPVAEETGLILPLDDWVLQTACRQLRQWQTAC-CQD 474

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++        L + + A++ +T   P  + +  +E+V M N +++   +  LR 
Sbjct: 475 MRVAVNMSGLQFAQPNLVDKVAAVLRETGLQPRLLIIEITENVAMRNLQQTIKHIKGLRD 534

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+S+ LDDFGT  S LSYL     + +K + S +    +     AI+R+++ M +++  
Sbjct: 535 LGVSVALDDFGTGYSSLSYLKNFAVNIIKIDRSFVADFINNRVSAAIVRAVLLMTESLHV 594

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++A+ +     +  L  MGC + Q   +  P   
Sbjct: 595 AVVAEGVETRQQLAVLQEMGCRHFQGYLLGRPQPL 629


>gi|320354763|ref|YP_004196102.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123265|gb|ADW18811.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 978

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 140/571 (24%), Positives = 252/571 (44%), Gaps = 12/571 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q +LA     +   +  +        + + ++  D     +T       I G     + G
Sbjct: 397 QKLLAENATRKSAENYLQLFKSIFDNAIEGIYITDPEGRILTVNQSFCKITGYQDAEVIG 456

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              + L Y      D  +          R  G    E   +  D       + I  + N 
Sbjct: 457 RNPSMLGY-----GDQGKAFYQGMWRNLRTMGAWSGEVWNQRKDGTVCPQWLSISVIRND 511

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              I  Y    +DITE K+  + I   A+ D LT +PNR +   RLT  +  ++ + +L 
Sbjct: 512 QQQITHYFAFFHDITELKRREKQISIMAYSDALTKLPNRAALERRLTKAIARASRN-HLN 570

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  ID+D +K IND LG   GD VL+ +  R+   ++  D L+RL G+ F ++  S +
Sbjct: 571 LAVFFIDLDNFKNINDTLGHDKGDQVLIEVADRLSGTIRSEDTLSRLGGDEFILLSESID 630

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           N   +   A  +  S+  PI L    I + ASIG A +     T+ E++KNA++AMY AK
Sbjct: 631 NEQAVYTLASRILASLKQPIQLTPHTIYINASIGIALFPEDGQTTQELIKNADMAMYKAK 690

Query: 686 HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F         +RV  +  +   ++  E  + Y P I L  E     EAL +
Sbjct: 691 SEGKNTFVLFTREMNEKLLNRVRTENAIRAGLKKREFSVFYQPKIDLASERPTSFEALAR 750

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W H     I   +F+ IAEE  +I  ++L++L+ +   +   +       + I +N++ +
Sbjct: 751 W-HRNGVVIGPDQFIPIAEESGLIDEMSLYVLDEVCLFLGKLQGHNLRM-LPISVNMSPR 808

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              + ++ E + A++         I+   +E+  M + + +   + R R+ GI  ++DDF
Sbjct: 809 TFNNVQIVETIDAILGSHHIDHRLIEFEITETTAMKDVQHTLATMHRFRQRGIRFSIDDF 868

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           GT  S LS+L  +P  T+K +   +        +I+ +I  M+K ++  ++A+ +     
Sbjct: 869 GTGYSSLSHLSEMPVSTLKIDKRFIGADDPNSRSIVSTITAMSKQMQLKVVAEGVETSNQ 928

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ L ++GC+ +Q  + + P+     L  L+
Sbjct: 929 LQWLRQIGCNEVQGFYYSRPMPEEETLHYLQ 959


>gi|229014470|ref|ZP_04171588.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
 gi|228746820|gb|EEL96705.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
          Length = 909

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 182/857 (21%), Positives = 346/857 (40%), Gaps = 34/857 (3%)

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174
           S  F   L              +  R+   D   F   ++P     F +      L  I 
Sbjct: 65  SRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FFYL------LFLIS 113

Query: 175 LWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230
                 Y+       L +   I      + A F   +Y++   ++ I T +    +V L 
Sbjct: 114 FAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 173

Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287
           Y   D  FL   +NL    L +        L S+LI++      Y +   +  +    T 
Sbjct: 174 YPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAYIKYFQPEHSMFTV 233

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           +    + +L               +  +     +     +          ++ I    + 
Sbjct: 234 APFYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVF 293

Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQ---GIFS 402
             I  IGL +     L    +       L+L  +        Q  L T    +    ++ 
Sbjct: 294 APIVVIGLMVTFAFVLIRHTLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYH 353

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +          D ++  D+  + +       T+LG  +  +      +   ++  D +
Sbjct: 354 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 411

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              T        +   +  E R    +   +++ +   P+      I     +  DITE 
Sbjct: 412 EIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITES 468

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E I   A+ D LT + NR+SF  +L   +  +         VM +D+D++K IND 
Sbjct: 469 KQQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKRP-FAVMFLDLDRFKVINDT 527

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L+++ +R+  +      LARL+G+ F I++        +   A  +  S+ 
Sbjct: 528 LGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMN 587

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  + + ++ SIG A +  +      +L++A++AMY  K++G N    +    ++ 
Sbjct: 588 EPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKK 647

Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I++DL LA+ N E +LVY P + +   +I+G EALI+W HP  G+IS  EF+ I
Sbjct: 648 MERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGDISPCEFIPI 707

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   +  +  ++L    R +  W+       + + +N+++K+   N+L E +  ++  
Sbjct: 708 VEETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISQILKD 766

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S L+YL   P DT
Sbjct: 767 VKIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 826

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  
Sbjct: 827 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGY 886

Query: 939 HVASPLGFNSILKLLKE 955
           + + PL     +K L++
Sbjct: 887 YFSKPLTSKQFIKFLQK 903


>gi|212637440|ref|YP_002313965.1| sensory box protein [Shewanella piezotolerans WP3]
 gi|212558924|gb|ACJ31378.1| Sensory box protein [Shewanella piezotolerans WP3]
          Length = 1497

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 136/569 (23%), Positives = 273/569 (47%), Gaps = 13/569 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  D    + A   + + V  +D       T      ILG  S ++ G   + +  +
Sbjct: 924  QRQLKDDVYLLAQAFENTTEAVLIYDRDELIQVTNKAAQDILGYKSSTLIGQSFSEV-LL 982

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  +   +L   +         E  V  A+++   + + +  + N+NG+   Y+ + 
Sbjct: 983  GKESGTHIADLLQHGLS-----WTGECTVACANDKQCVVWLNVSSILNTNGEATHYVVVF 1037

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DIT++K++   +   A  D LTG+PNR  F  +L+  +  +  +   +  ++ +D+D++
Sbjct: 1038 SDITDRKRTEADLRRLANYDVLTGLPNRSLFSSKLSQSIYQAEKEGG-KLALLFLDLDRF 1096

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +   ++L R  G+ F I+L  +     I      
Sbjct: 1097 KHVNDSYGHSMGDALLVEASNRLQTFISQENVLCRFGGDEFVILLRDDIYIDSINRLCEQ 1156

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  SI  P +L  RE  ++ SIG + W         ++KNA+LAMYHAK  G  + + + 
Sbjct: 1157 LLASIQQPFDLYGREFYISTSIGVSLWPEDAKQPETLIKNADLAMYHAKDEGKGNFKYYS 1216

Query: 697  VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
                      + ++ DL  A+E  E  L + P I +  ++++VG+EAL++W+HP+ G + 
Sbjct: 1217 QDRNAEALYHLRLEADLRKAIERDEFELHFQPQIDILQNDKLVGVEALLRWNHPQDGYVR 1276

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +  F+ +AE   +I  I+ +++    R    W  Q    P+ + +NI++     ++  +G
Sbjct: 1277 TDIFIKVAEACGLIVEIDRWVMREACRHGARW-AQTLTEPLEVSVNISALHFRQHDFIQG 1335

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++  +++T      + L  +E V+M   + ++  L  L+ +G+ + +DDFGT  S L+YL
Sbjct: 1336 VEKCLAETGMPNHALSLEITEGVLMKELKVAKQHLKELKALGVDVAIDDFGTGYSSLAYL 1395

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI  SII +A+N++  ++A+ +     ++++   G
Sbjct: 1396 RHFEVNTLKIDRSFLIDIATNKADQAIASSIIELARNLKLDVVAEGVETHEQLEQVFSRG 1455

Query: 932  CDYIQDSHVASPLGFNSILKLLKERFPLV 960
            C  IQ  + A P+    +   +  R  L 
Sbjct: 1456 CYVIQGYYFAKPMSSADLEVYMATRADLS 1484



 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                  +  ++ G++LI + +     + V+A    +  +     R   A+ GS   +W+
Sbjct: 764 WWQTSWFKGLMLIGVLLIGLAVILIRQRQVMAFRAINSALSDSENRLKQALKGSDSELWE 823

Query: 421 WDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           W +  D       +  + GL ++      ++     IH  D+ N        +  R  R 
Sbjct: 824 WLLETDVF----RLENVGGLLSAKDSQVYLKIGEIPIHNEDKSNVLIAWKDMLEERVDRF 879

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGILCNA 533
           + E+R   +DN + W+ +  RP+  +  NG+I R  GI  DITEQ++  + +   A
Sbjct: 880 EVEYRYLRSDNSWGWIRVLGRPVERNRINGEIERVAGIYTDITEQRQLKDDVYLLA 935


>gi|309778800|ref|ZP_07673573.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308922508|gb|EFP68132.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 883

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 264/580 (45%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LA+    + V                  IL +  G + G  
Sbjct: 297 AIQKDNVERGLAESEERYRLAISNLHEGVVIMSPDGVVQAANASAERILRVRPGQLVGRN 356

Query: 450 R-NWLPYIHINDRDNFRTILDS---FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-N 504
           R + +  +         + +      +          + +     +  W+   I P+  +
Sbjct: 357 RLDPIQRVVDEHGKEVGSTMMPSGLVLRTGEPIFGRVYGLLLKTGELMWVRQNIIPIRRH 416

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +       +    DIT+ K++ + +   A  D LTG+ NR  F+  L + ++ +  D++ 
Sbjct: 417 AEPTPSSVMLSFADITDIKRAEQRLRHLAAHDALTGLTNRSFFIAHLESAIESA-RDESR 475

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 476 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIDQR 535

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +IA  A  + +++  P + +     +  SIG A +    I+ S++L++A+ AMY A
Sbjct: 536 VEGKRIALLAERLLQAMREPFDTVNGRYYLGVSIGVALYPHDGISGSDLLRSADAAMYRA 595

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A EN+EL LVY P   L    IVG EAL+
Sbjct: 596 KQNGRNRAQFYTAELNARLQRRYMLENALRDARENNELQLVYQPKYDLASHRIVGAEALL 655

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G IS  EF+ +AEE  +I  I  ++L R     + W +        + +N+++
Sbjct: 656 RWNSAKLGAISPVEFIPVAEETGLIVPIGAWVLRRACEQAVIWYEALGY-DFRMAVNLSA 714

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  ++ +   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 715 RQFQAGDVVPMIEQTLADSGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 774

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S +TG       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 775 FGTGYSSLSYLQRFPISNVKIDRSFITGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 834

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+      +LL+    +V
Sbjct: 835 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLSVV 874



 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 7/122 (5%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           S D V    +    V   P  A +LG      + G        IH +D       L   V
Sbjct: 16  SSDAVLLT-VDGRLVQANPAAARLLGAQDPAQLAG--LQLAGLIHPDDVAQVVPRLAGMV 72

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E R+  AD     +           G     + +   ++  + +LE     
Sbjct: 73  SSGVSAQPVEHRLVRADYTHVLVASEAAA-CEHEGQPAVMLVLREAVS--RHALERHAVQ 129

Query: 533 AF 534
           A 
Sbjct: 130 AR 131


>gi|317153412|ref|YP_004121460.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943663|gb|ADU62714.1| diguanylate cyclase [Desulfovibrio aespoeensis Aspo-2]
          Length = 711

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 137/571 (23%), Positives = 266/571 (46%), Gaps = 13/571 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHG 447
           V       + + +  +R  +    + D  W+         +  +P    I G        
Sbjct: 143 VAELEASREALLNSEQRYRMVADYNYD--WESWIGPDGKAIYISPSCERITGYPPDRFIE 200

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   +H +D   +   +          L  ++R+   + +  W+ +    +++  G
Sbjct: 201 DPDLMQRIVHRDDIHIWHNYMADTSSGDDDGL--DYRIHHRNARTKWVSLIKHAVADEAG 258

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           + L       D+T +K+  + +  ++  D LTG+PNR   LDRL+  ++ SA  D+    
Sbjct: 259 NPLGVRVSVRDVTHRKRMEQQLKHSSLHDPLTGLPNRALLLDRLSQAVERSARTDDY-FG 317

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ I++D+++ +ND  G  +GD +LV +  R+  +++  D +AR  G+ F +++      
Sbjct: 318 VLFINLDRFQAVNDHFGHVMGDRLLVEIGVRLSRVVRPVDSVARFGGDDFVVLIEEMPRK 377

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           + + D    +R S   P  +   +  +TAS+G     + +     ++ NA+LAMY AK  
Sbjct: 378 IDMRDMVRIIRDSFKEPFEVNGTDFPITASMGLEIARA-ESDPESLVHNAQLAMYKAKES 436

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +    +         + + ++ DL  A+   E    + PI+ L D ++ G EAL +W+
Sbjct: 437 GKDRYLVYDARMREGVVNVLAVENDLKRALRAHEFEAHFQPIVNLSDGQLYGFEALARWN 496

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKD 804
           HP+ G +S  EF+ +AEE  +I  +   +LE     +  WR +      + + +NI++K 
Sbjct: 497 HPQRGLVSPGEFIPVAEETGLIVELGAHILEYACTTLSQWRSRYPGAGNLVMAVNISAKQ 556

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             + +L   ++ +++++   P  +KL  +E+VVM +   S + L  L+ +G+ L++DDFG
Sbjct: 557 FGEAKLVTSVKDILARSGLPPGLLKLEITETVVMLDAMESSVRLNLLKSLGVKLSVDDFG 616

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S +SYL   P D +K + S +       + I I+R+I+ MA ++   ++A+ I  E 
Sbjct: 617 TGYSSMSYLQKFPVDQLKIDLSFVRLMEKGPENIEIIRAIVNMAHSLRLRVVAEGIETER 676

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               L  + CDY Q    + PL  +     L
Sbjct: 677 QRDLLYSLQCDYGQGYLYSKPLPRDEAEAFL 707


>gi|229199424|ref|ZP_04326088.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|228584052|gb|EEK42206.1| Sensory box/GGDEF [Bacillus cereus m1293]
          Length = 887

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 165/870 (18%), Positives = 346/870 (39%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 30  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 85  YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 138

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274
            + +   + +         L  L+ +      +     ++       + L+      Y +
Sbjct: 139 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 198

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +     +     +       
Sbjct: 199 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQVLLTPKFGEAIRLSLPYISV 258

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 259 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 318

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 319 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP 378

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 379 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 433

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM
Sbjct: 434 SGVYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSKIS-KMPFAVM 492

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      
Sbjct: 493 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPD 552

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G 
Sbjct: 553 VKKIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGK 612

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 613 NGSSLYTKELYKKTERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHP 672

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L    R +  W        + I +N+++K+   
Sbjct: 673 LLGDIPPCEFIPIVEETPQVIPLGHWVLNESCRQLKIWH-TFGYKDLKISVNLSAKEFQQ 731

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L E +  +I+     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 732 NNLIENILQIITDVKVDPKDVTLELTERIAMIDEKETLSKLKQLKEYGIQTSIDDFGTGY 791

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 792 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 851

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL  +  +K L++
Sbjct: 852 FLQKNNCKYMQGYYFSKPLTSHQFIKFLQK 881


>gi|297530367|ref|YP_003671642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
 gi|297253619|gb|ADI27065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
          Length = 705

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 148/576 (25%), Positives = 265/576 (46%), Gaps = 16/576 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V++           +     R  L V  S D V  +   R+     P           
Sbjct: 135 LCVLRRQAEESGLQARLAEAERRLQLIVEHSNDYVLIFSPNRELSYIPPSWKRKTN---K 191

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       L ++H +D       L         +   EFR +    ++ WM  + + + 
Sbjct: 192 RLPVSYEEVLTFVHPDDAPVVAQKLAELYDTYETQ-SAEFRKQGEKGEWVWMEAQGKAII 250

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +   I    +I+E+K+  E +   A+ D+LTGI NR  F   +  ++        
Sbjct: 251 DEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERHIHELIA-----SQ 305

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +  +D DK+K IND      GD  L    +R+   L+  D  AR+ G+ F ++L +
Sbjct: 306 TPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGDEFVLLLPN 365

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +  +   A  +  S   P    ++ I  T SIG A +        +++K A+ A+Y 
Sbjct: 366 ITKTE-MTALAERLVSSFHEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVMKYADQALYE 424

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            K RG N    +R +  R     I++DL  A+   +LYL Y P ++L   + +G+EAL++
Sbjct: 425 VKERGRNGYAFYRPTEHRQAV--IEQDLPFAIMRGQLYLCYQPKVQLAKGKAMGVEALLR 482

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G+I   +F+ +AEE   I  I L++LE+  R +  W  +   P + + +N++  
Sbjct: 483 WRHPSLGDIPPLDFIPLAEESGFIFEITLWVLEQACRQVKEWEKKF--PGLKLAVNLSPF 540

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   EL E ++ ++ +T  +P+R+ L  +ES +M N E  R +L  L+++G+   +DDF
Sbjct: 541 LLNRPELIEHVKRVLRETGLAPNRLILEVTESGLMENIETGRHILTELQRLGVQAAIDDF 600

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+Y+  +P   +K + S + G  E      I+ +II +AK+++  ++A+ +  E
Sbjct: 601 GTGFSSLAYIRNLPVSLLKIDRSFIQGIAENSKDATIVDTIIHLAKSLDIEVLAEGVETE 660

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             +  L++M CDY Q  + +  L    + + L+E  
Sbjct: 661 PQVALLSQMHCDYAQGFYFSRSLEAKKLQQWLEEYN 696


>gi|150017914|ref|YP_001310168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904379|gb|ABR35212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium beijerinckii NCIMB 8052]
          Length = 584

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 153/555 (27%), Positives = 275/555 (49%), Gaps = 5/555 (0%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ++   A+  +   VW+W+I  D    +     I G  S      I          DR++
Sbjct: 31  LKKYKQAIDEANIAVWEWNIKEDSFFISDAWEEITGYNSKDFSSLIDCIEKVAISKDRED 90

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             T L+ FV  +      EFR+   DN+  W++ +   +   +  + R  G+ NDITE+K
Sbjct: 91  ALTDLNFFVADKVTLYVSEFRIITKDNKLKWVLFKGNGIKEKDEGVTRIFGLVNDITEEK 150

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  +GI  N + D+LT +PNR  FL  +  ILD +         ++ ID+D +K IND L
Sbjct: 151 EREKGIADNLYHDSLTNLPNRDMFLMDIKNILDKNIQLSQ-EGAIIFIDLDNFKSINDTL 209

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L   ++ +   +K    L R+ G+ F +I+   N+  K+ D    + K    
Sbjct: 210 GHDYGDLMLKVFSQLLHVCIKDYGKLYRVGGDEFIVIIEKVNSIEKVKDMCNTILKYCKN 269

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L E  + +T S+G + +       +++LK A+LAMY +K  G N    F  +  R  
Sbjct: 270 PFELNENHLYITTSMGISIFPRDSNNMNDLLKFADLAMYKSKADGKNTYTFFEQALSRLY 329

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I  + +L  A++ +E  +VY P I  +D ++V  EAL++W+  K G +S +EF+ IA
Sbjct: 330 TRRIIIENELKEAIKKNEFSIVYQPQIDALDNKVVAFEALLRWNSKKLGFVSPAEFIPIA 389

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + +I  I  ++ E+  R I   +++       I IN++   + + +  + +     + 
Sbjct: 390 ERIGIIVDIGDWVFEKACRKIRELKERKYEFN-NICINVSPVQIKERDFKDKIIKTCEEN 448

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S I++  +ES ++   +     L  L K GI++++DDFGT  S LSYL  +P +T+
Sbjct: 449 KIPLSLIEIEITESTLIELDDEKIADLHELIKKGINISIDDFGTGYSSLSYLTILPINTL 508

Query: 882 KFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + S +     +K  A++  I+ ++K+++  +IA+ +  +  + EL  +GC+ IQ  + 
Sbjct: 509 KIDKSFIDNIRNDKNRAVIECILSLSKSLKYKVIAEGVEVKEQLNELMNLGCNIIQGYYF 568

Query: 941 ASPLGFNSILKLLKE 955
           + P+    + K+LK 
Sbjct: 569 SKPVCEEELEKMLKN 583


>gi|27375993|ref|NP_767522.1| hypothetical protein bll0882 [Bradyrhizobium japonicum USDA 110]
 gi|27349132|dbj|BAC46147.1| bll0882 [Bradyrhizobium japonicum USDA 110]
          Length = 1043

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 140/574 (24%), Positives = 258/574 (44%), Gaps = 14/574 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
               I+ +       Q    +       +      +   D    R +         L  A 
Sbjct: 466  VATIEDITERRNLEQERDRNHTFLREIIDHIPSRITVKDAHTRRYLLANEVAEEQLVTAP 525

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             ++ G           +  +      D  +    G    E           ++      +
Sbjct: 526  ETIVGKTA--FDLYPTDAAEIITRDDDKLLQSPDGLFLDEHIWSTPTIGRRYITSTRIGI 583

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             + +G+    I +  D+TE++++ E I   A  D LT +PNR  F +++   L  +   D
Sbjct: 584  RDKSGEPRYIINVVEDVTERRRAHEKIAHMAHYDALTDLPNRTLFREQIEREL--AKVAD 641

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              +  ++ ID+D++K IND LG  VGD++L ++  R+   LK  D++ARL G+ F +I  
Sbjct: 642  GGQFALLYIDVDEFKGINDSLGHHVGDELLKAIATRLRGCLKKSDLIARLGGDEFAVIQT 701

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +   +  F   + ++I  P + L  +++  ASIG A          +++KNA+LAMY
Sbjct: 702  GIQSRADVLSFVTRIYEAIRQPYHCLGHQLSTDASIGIALAPQDGNDLDQLIKNADLAMY 761

Query: 683  HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G      F          R+ +++DL  A+ N    + Y P++ L   E+ G EA
Sbjct: 762  GAKAEGRRTHRFFEPEMDACAKARLTMEQDLRQALVNGGFEIHYQPLVDLRSGEVSGCEA 821

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++W HP+ G IS +EF+ IAE+  +I  +  ++L     +  +W        + + +N+
Sbjct: 822  LLRWRHPERGGISPAEFIPIAEDTGLINELGDWVLRMACNEAATWPAH-----VRVAVNV 876

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +   L  + L   +   ++ +   P R++L  +E+V++ + E +  +L +LR IG+ + L
Sbjct: 877  SPVQLKCDTLALRIAGALAASGLDPRRLELEITEAVLIRDDEAALAILHQLRAIGVRIAL 936

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S LSYL   PFD +K +   +    E   A  I+++++ +A     T +A+ +
Sbjct: 937  DDFGTGYSSLSYLKRFPFDKIKIDRCFVADIAETSGAPVIVQAVVNIAAASHMTTVAEGV 996

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              E   + L  +GC  +Q    ++P   + + KL
Sbjct: 997  ETEAQRELLRALGCTEMQGYLFSAPKPASEVRKL 1030



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 3/185 (1%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           ++I             R     +        V+I +++   + Q         +GI ++ 
Sbjct: 301 LVIVATNTTAAALADWRQQTGFMVTTAALSAVVIALILFLIIRQINRQNREAQEGIEAER 360

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            R   A+      +  +D     VT     A + GL+   +           H  +RD F
Sbjct: 361 LRLDTALNNMSQGLILYDAAGYIVTCNRRYADMFGLSHDVIKPGCHIREAMYHRKERDAF 420

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              ++ F      R   E  V            R   + N+      ++    DITE++ 
Sbjct: 421 DGDVEEFCD-DVMRTVAEGTVSTR--THQIANGRAFQVINTPLAQGGWVATIEDITERRN 477

Query: 525 SLEGI 529
             +  
Sbjct: 478 LEQER 482


>gi|74317060|ref|YP_314800.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Thiobacillus denitrificans ATCC 25259]
 gi|74056555|gb|AAZ96995.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC and GAF sensor(s) [Thiobacillus
            denitrificans ATCC 25259]
          Length = 1059

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 138/584 (23%), Positives = 245/584 (41%), Gaps = 18/584 (3%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
              I     +    +A     Q   +   RQ+  +  + D +    +             +
Sbjct: 467  AFITSTLQIFASRVAAELERQSADAHIRRQASLLDKAQDAIMVRGLDDAIRYWNKGAERL 526

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             G  +  + G     L Y    D   FR      + +       E      D     +  
Sbjct: 527  YGWKADEVTGRSTEMLLY---GDPTAFRENTRKVIAH--SEWNGEITQLRKDGTALVVEA 581

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                + + N      + I  ++TE+K +   +   AF D LTG+PNR+   DRL   +  
Sbjct: 582  HWTLLRDENDQPDAILAINTNVTERKAAEHKVHQLAFYDPLTGLPNRELLGDRLQHAM-- 639

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                      +++ID+D +K +ND LG A+GD +L  + +R+   L+  D LAR+ G+ F
Sbjct: 640  -QVRHGQVGALLLIDLDNFKTLNDTLGHAMGDLLLQQIAQRLQTCLRKGDTLARVGGDEF 698

Query: 618  GIILISEN-NSLKIADFAIA----MRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             I+L   + +       A      +  S A P  L +     TASIG   +     T  E
Sbjct: 699  VIVLEGLSASPGDAGSLATRVGEKILASFARPFQLADYVHHCTASIGITLFNDRPTTLDE 758

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
            + K A+LAMY AK  G N +  F  +          ++ DL  A+      L Y   +  
Sbjct: 759  LRKRADLAMYQAKAHGRNALRFFDPAMQAVVAARAELEVDLREALRLGAFELHYQAQVDA 818

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
                + G EAL++W HP+ G I+ + F+ +AEE  +I  + L++L+     +++W    +
Sbjct: 819  R-GCVSGAEALLRWQHPQRGWIAPASFIPLAEETGLILPLGLWVLDVACAQLVAWSKMPH 877

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            M  + + +N++++     +    + A I ++   P R+KL  +ES+++ N + + L +  
Sbjct: 878  MARLSLAVNVSARQFRQADFAAQVLAAIERSGADPRRLKLELTESLMLDNLDDTILKMSA 937

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKN 908
            L+  GI  +LDDFGT  S L+YL  +P D +K + S +          +I RSI+ + ++
Sbjct: 938  LKAHGIGFSLDDFGTGYSSLAYLKRLPLDEIKIDQSFVRDVLIDANDASIARSILALGQS 997

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +   ++A+ +  +     L   GC   Q      P         
Sbjct: 998  LNLEVVAEGVETDAQHAFLAEHGCQAYQGYLFNRPQPARQFEAW 1041



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFR 484
            V        I G     + G     +  +H  + DR   R I ++    R   ++ E  
Sbjct: 55  IVFVNDAFEHITGYRRDEVLGKS---VRLLHGPLTDRAEVRRIGEALENQR--PVRSELV 109

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             +   +  W+ + + P++++NG     + +  D+T +K++   +             NR
Sbjct: 110 NYSKHGEPFWLELDVVPVTDANGYYTHCVAVERDVTRRKEADLELARL----------NR 159

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMV 570
                R+ +  + + T       ++ 
Sbjct: 160 AL---RVRSACNKALTRATDEGELLH 182


>gi|95930562|ref|ZP_01313297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133397|gb|EAT15061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 868

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 145/597 (24%), Positives = 274/597 (45%), Gaps = 14/597 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
              AL+ G VL++ L+  T +         ++ +    +R       S  ++++  +   
Sbjct: 272 WLRALISGAVLLLFLLIITALL-RWQVRRKTEELRRFKQRFEYLQKASPVVLFNLALPTG 330

Query: 427 R----VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           R    +  + +I  + G      +     W   IH  D       + S    + G    E
Sbjct: 331 RAPEVLWVSDNITRLFGFTPEQTY-QPGWWQSIIHPGDLQQLEANMRSM--PKIGHGSVE 387

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           +R+   D    ++   ++ +  +     + +G  NDIT  ++  + +      D LT +P
Sbjct: 388 YRLYDNDGTLRYVREELQFLPATATSPAQVVGSWNDITTSREQQDQLSFLTHYDPLTQLP 447

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR     +L   L         +  ++ +D+D +KKIN+  G   GD +L     R+  L
Sbjct: 448 NRTLLHLQLQDALAHI-ETGQDQLAILNLDLDHFKKINETFGFDFGDKILRQTAGRLKHL 506

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D +AR+  + F II+  EN +   +  +  +   +  P+N+ ++E+ VT S+G + 
Sbjct: 507 LRLEDSIARMGADEFVIIIQGENIAELASSISRRILHRLGTPLNIEDQELIVTTSVGISL 566

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720
           +         +LKNAE+A Y AK +G N +  F         + ++++  L  A+E  EL
Sbjct: 567 FPEDGADPETLLKNAEIARYAAKRQGRNRLHFFSSQLSDNVRENLVMESALRNAIERKEL 626

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P + L   ++VG+EAL++W  P+ G +    F+ +AEE+ +I  I L++LE   R
Sbjct: 627 VLHYQPQLDLNSGDLVGVEALVRWQRPEIGLVPPGLFIPLAEEIGLINDIGLWVLEEACR 686

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
             I W  Q    P  + +N+A + +    L + +  ++  T     R++L  +ES +M  
Sbjct: 687 QTIDWDRQGYHVP-RMAVNLAVQQIESGHLPQQVLQILQYTGLPAQRLELEVTESAIMIE 745

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898
           P+++   L   + +GI L +DDFGT  S L+YL  +P D +K + S +           I
Sbjct: 746 PKKAADALLEFQSMGIRLAIDDFGTGYSSLAYLKRLPLDRLKIDRSFVMDIGTNAGDDII 805

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            R+II ++ ++    +A+ I     ++ L R GC+  Q    + PL  ++++  + +
Sbjct: 806 SRAIINLSNSLGMDTVAEGIENTDQLEFLRREGCEIGQGYLFSKPLPADAVMAFMDK 862


>gi|330502907|ref|YP_004379776.1| sensory box protein [Pseudomonas mendocina NK-01]
 gi|328917193|gb|AEB58024.1| sensory box protein [Pseudomonas mendocina NK-01]
          Length = 1095

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 144/587 (24%), Positives = 264/587 (44%), Gaps = 20/587 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442
               +  +       Q + +  E+ + A   S D +   +      +        + G + 
Sbjct: 515  VGTLVDISERLMREQRVRASEEKFAKAFHSSPDAITITERDSARYIEVNEGFTRLTGYSP 574

Query: 443  GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G     +      ++R      L          L  E   +    +   + + ++P
Sbjct: 575  DEVVGRTAFEMDIWAFPDERQQLLEQLAR----NGQVLHLEMHGKHRSGEVRLVDVSVQP 630

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G     +  A DI+E K++   +   A+ D LT +PNR   +DRLT  + L    
Sbjct: 631  I-ELDGVPC-LLLTARDISELKQAQAQVQHLAYHDALTNLPNRALLMDRLTQQISLLKRH 688

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            D LR  ++ +D+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 689  D-LRGALLFLDLDHFKHINDSLGHPVGDSVLRLVTARLEASVRLEDTVARLGGDEFVVLL 747

Query: 622  ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                         +   A  +R+ +A P+ L    + VT SIG A       T +++LK 
Sbjct: 748  SGLEGKRSEVTRHVRQVADKLRQLLAEPMLLDGHRLQVTPSIGVALIPDHGNTPADLLKR 807

Query: 677  AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N ++ FR +     S R+ ++ DL LA+   E  L + P +   D +
Sbjct: 808  ADIALYRAKDSGRNAIQLFRTTMQDAASARLRLENDLRLALARGEFELHFQPQVDARDGK 867

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
            +VG EAL++W HP+ G  S + F+ + EE  +I  +  ++L                   
Sbjct: 868  VVGAEALLRWQHPQLGPQSPAHFIQVLEESGLIVEVGGWVLAEACHFCSQLLTGGLVDSE 927

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
               + +NI+ +    ++  E + + +  +    + +KL  +E +V+ N + +   + RL+
Sbjct: 928  RFSLCVNISPRQFRQHDFVERVASCLRDSQLPNAMLKLEITEGIVIQNIDDTVGKMLRLK 987

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            K G+S  +DDFGT  S L+YL  +P D +K + S +    +      I+R+I+ MA+++ 
Sbjct: 988  KHGVSFAMDDFGTGYSSLTYLKRLPVDMLKIDQSFVRDATNDPNDAEIIRAIVAMARSLG 1047

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +IA+ +  +  ++ L   GC   Q    + PL   +   LL  + 
Sbjct: 1048 LALIAEGVEQQDQLEFLQSQGCHLYQGYLFSKPLPQEAFHDLLSMQN 1094



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 20/207 (9%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIG-----------FTVIQHVLATGYFSQGIF 401
            L  A T RLDN  ++     G V   +L G              ++++       Q + 
Sbjct: 344 MLEAARTGRLDNLEVRLFSRDGSVTSNLLFGGEIELNGTTCLVLTVRNITEQRAQEQALN 403

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +R  LA+  +    WDW I   R+  +   + + GL + +  G   ++   + + DR
Sbjct: 404 ESKQRLRLALESADLGTWDWHIPSSRLIASARASQLQGLDAATFEGAFLDFFRKVPMEDR 463

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            N R      V  RR   Q  +RV   +    ++    +   +  G  LR +G   DI+E
Sbjct: 464 HNLRQSYQRLVQERRSHYQVTYRVHLENGGLRYLESTAKLQLDEAGQPLRMVGTLVDISE 523

Query: 522 ------QKKSLEGILCNAFQ---DNLT 539
                 + ++ E     AF    D +T
Sbjct: 524 RLMREQRVRASEEKFAKAFHSSPDAIT 550



 Score = 97.7 bits (242), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 24/193 (12%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           +  + D  R   A+ G+    W WDI   +V  +     + GL          +++  I 
Sbjct: 23  EQTWQDAPRLLAALNGAHLGTWYWDIRSGQVNWSRGAQALFGLDPNRPVTRELHYIELIP 82

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +R       ++ +   +       R+R  D   HW+ I       ++G   R  G+  
Sbjct: 83  EEERAEVLATFEAILKGEQISNALRHRIRWPDGSLHWLEITGSLQREADGRP-RMFGVIR 141

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+ Q++  E +               ++  +R  ++  LS         +M++  D  +
Sbjct: 142 DISAQQERAEAL---------------RASEERFASLFRLSPD------IMMLVRYDNSE 180

Query: 578 --KINDVLGIAVG 588
             ++N     A G
Sbjct: 181 IVEVNQHFTHAFG 193



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 41/149 (27%), Gaps = 15/149 (10%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
                           + +  E+ + A + + D V   D    R +   P      G +S
Sbjct: 262 LCTFLDTSERKRAENALRASEEKFAKAFMHTPDAVAITDRETGRFIEVNPSFERQFGWSS 321

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               G     L       DR      L++    R      E R+ + D            
Sbjct: 322 MEAVGHTSLELGIWADPRDRQRM---LEAARTGRLD--NLEVRLFSRDGSV-----TSNL 371

Query: 502 MSNSNGDILR---YIGIANDITEQKKSLE 527
           +     ++      +    +ITEQ+   +
Sbjct: 372 LFGGEIELNGTTCLVLTVRNITEQRAQEQ 400



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIATILGLA 441
           F VI+ + A    ++ + +  ER +     S DI+    +D   + V          G  
Sbjct: 137 FGVIRDISAQQERAEALRASEERFASLFRLSPDIMMLVRYD-NSEIVEVNQHFTHAFGWN 195

Query: 442 SGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +  + G   + L   +H + RD     L       R  +  E ++R         ++  +
Sbjct: 196 ASDILGRPTHELNLWVHASQRDQ----LRQQAPLSREPVIQEVQLRTRAGDILDGVLSSQ 251

Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526
            +      +   +    D +E+K++ 
Sbjct: 252 YIELQGDRL--MLCTFLDTSERKRAE 275


>gi|289626596|ref|ZP_06459550.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330867964|gb|EGH02673.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 642

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 153/635 (24%), Positives = 290/635 (45%), Gaps = 20/635 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      + L   I +       Q       VL+ +++ F     ++ ++   
Sbjct: 14  LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSVVMIFIARDRLRSLIGGD 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              Q   +D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + ++ +  S +    G+   E   R    + +     IR +   +G   
Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSA-RASKCGCALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G  
Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  A+E  +L + Y P+  L+   I G+EAL++W HP+
Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAIELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +   + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           L   GC   Q    A P+     +       P+ K
Sbjct: 608 LLGNGCQLGQGYWFARPM-VAQAIDW--THAPVFK 639


>gi|300696950|ref|YP_003747611.1| modulator of Rnase II stability, signal transduction protein
           eal-ggdef domains (gmr) [Ralstonia solanacearum
           CFBP2957]
 gi|299073674|emb|CBJ53194.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           CFBP2957]
          Length = 589

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/568 (26%), Positives = 263/568 (46%), Gaps = 24/568 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    + +   D  R      P  A +LG++  ++ G          I++ D     +D
Sbjct: 10  MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 69

Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-------------RY 512
                 +   R +L   F +R  D +  W+     P+    G+                 
Sbjct: 70  WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQQPYAV 129

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D
Sbjct: 130 LVSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLD 188

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K IND LG   GD +L  +  R+    +  D +ARL G+ F ++L S  + +    
Sbjct: 189 LDRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRR 247

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +I  P ++  +E+ V  SIG A         + +L+ A+ AMY AK RG N+ 
Sbjct: 248 VAERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNF 307

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           ++F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W+   +G
Sbjct: 308 QTFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFG 367

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L
Sbjct: 368 RLMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPDLRMSINLSGQAFSSGQL 426

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  ++ +      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S L
Sbjct: 427 SGMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSL 486

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L 
Sbjct: 487 SYLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLR 546

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
            +GCD  Q   +  PL   ++  L++E 
Sbjct: 547 EIGCDEYQGYLLTRPLEPAAMHDLVREH 574


>gi|254383498|ref|ZP_04998849.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342394|gb|EDX23360.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 709

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 135/570 (23%), Positives = 248/570 (43%), Gaps = 15/570 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIR 450
           A     Q + +   R      G+   +   D+  + +     +  + G L        + 
Sbjct: 137 ARTDAQQALHASEARFRAVFEGAAIGIGIADLDGNVLEVNDTLLQMFGGLDGHVRSRNVS 196

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W    H +D  +   +    V   R   + E      D    W  + +  + ++ G   
Sbjct: 197 EWG---HPDDTPHVWQMYAELVRGEREHYRVEKPYYRHDGTVLWTNLTVSLLRDAEGRPQ 253

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  D TE++     +   A  D LTG+PNR  F +RL   L  +         +  
Sbjct: 254 YQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALGGA---GGKHFGLCY 310

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLK 629
           +D+D +K +ND LG + GD +LV +  R+        +++ARL G+ F  +    +   K
Sbjct: 311 LDLDGFKAVNDSLGHSAGDRLLVEVADRLQSCATGPGEVVARLGGDEFVALTTGSDTDEK 370

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             + A+ +  +++ PI L  RE++V  SIG     + + T +E+L++A++ MY AK  GG
Sbjct: 371 ATELAVRILSALSTPIRLDGRELSVRGSIGIVEGPAGERTPAEVLRSADITMYRAKAAGG 430

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  E     +         +   L  A+E  E ++ Y P++ L D  + G EAL++W HP
Sbjct: 431 NRFEFADAEADARAITRHGLTNALPAALERGEFFIEYQPLVHLHDGSVHGAEALVRWSHP 490

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           ++G +    F+ +AE   +I  +  ++LE   R   +W+ Q     + + +N++   L  
Sbjct: 491 QYGVLGPDRFIPLAERTGLIVPLGRWVLEEAVRQARNWQRQHGCSALRVNVNLSPTQLHH 550

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L     A++  +  +P  + L  +ES ++G  +     L RL  +G+ + LDDFGT  
Sbjct: 551 PGLVADTVAVLENSGLAPGALCLEVTESALIGADDELLEPLRRLAALGVDIALDDFGTGY 610

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           S L+ L  +P   +K + S   G          + I+  I+ +A ++E  +  + +    
Sbjct: 611 SNLANLRRLPVSVLKLDRSFTQGMQQQPADPVDVKIVEGIVALAHSLELAVTVEGVETGA 670

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              +L  +GCD  Q  + A P   + I  L
Sbjct: 671 QAAQLRELGCDTAQGWYYARPGAPDRIHTL 700


>gi|149187425|ref|ZP_01865723.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1]
 gi|148838961|gb|EDL55900.1| hypothetical protein VSAK1_17917 [Vibrio shilonii AK1]
          Length = 698

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 145/605 (23%), Positives = 265/605 (43%), Gaps = 20/605 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
                +        IQ      + +I +    T  + V      +  IF++ +       
Sbjct: 107 AYGHDVWLETIKSPIQQPDGELIGVIGMTRNVTRRKQVEVRLSITSEIFNNFQ------- 159

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
              + +   D     +      + + G  +  + G    +L   H +D   F   L   +
Sbjct: 160 ---EGMMITDQNGKILDVNSAFSEVTGYQAIEVIGKNPRFLQSGHHDD--KFYQNLWQQL 214

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G  + EF  R  D   +  +  I  +++    +L YI +  DI++QK   E +   
Sbjct: 215 SE-TGLWKGEFINRKKDGSIYPQMATISTINDDGNSLLHYICVFEDISKQKAHEEKLRKM 273

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LT +PNR      L   ++        +   + +D+D +K IND  G   GD +L
Sbjct: 274 AFFDPLTNLPNRSHLTSILEQSIEGGQRHSE-QFATLFLDLDHFKHINDSKGHLYGDRLL 332

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE- 651
             +  R+ ++L     + R+ G+ F IIL   ++  ++ D           P  L  +E 
Sbjct: 333 SQVADRLTDVLHHRASIGRIGGDEFVIILTDYDSEAQLLDTIDETLGVFNRPFELDSQES 392

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKE 709
           + V+ SIG A +      S  +LKNA+ AMY AK  G N    +           V ++ 
Sbjct: 393 LRVSGSIGVALYPQDGQNSETLLKNADTAMYLAKKNGRNGYAFYSPDLTYSSVLHVRVQS 452

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  AVE  +L LVY P   L +  ++G+EAL++W+HP+ G I+ ++F+ IAE+  +I+ 
Sbjct: 453 ALHDAVEKQQLSLVYQPQYDLANNTLIGVEALLRWNHPELGVIAPAQFIPIAEKTGLIQR 512

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++         W DQ       I +N++   L        ++  +  T +   R++
Sbjct: 513 IGAWVIREACEQGRRWLDQGIEFG-KIAVNVSGLQLQHPNFVTKLKQKLLDTNFPAERLE 571

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES ++ + + +   L ++R++GI ++LDDFGT  S LSYL  +P   +K + S + 
Sbjct: 572 IEITESFLLIDHQLAVDTLNQIRELGIEISLDDFGTGYSSLSYLKGLPISKLKIDRSFIC 631

Query: 890 GSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +     AI+++II M + +   I+A+ +     ++ L   GC+Y Q    + P+  +
Sbjct: 632 DVPDENDSNAIVQAIIVMGETLSLKIVAEGVENGDQVEYLRSHGCEYGQGYVFSKPVTAD 691

Query: 948 SILKL 952
            +  L
Sbjct: 692 QLALL 696



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ++   A+    D VW  D  R  +     + +   L    + G           +  +
Sbjct: 27  SLQQFIDALD---DHVWVKDSDRKYIAVNKSVESAWNLPRSEIFGKTD--FELFSKSRSE 81

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +++   D  +         E   R A     W+     P+   +G+++  IG+  ++T +
Sbjct: 82  HYQKADDRVIDSGAQETVEECASRDAYGHDVWLETIKSPIQQPDGELIGVIGMTRNVTRR 141

Query: 523 KK 524
           K+
Sbjct: 142 KQ 143


>gi|237797916|ref|ZP_04586377.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020767|gb|EGI00824.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 643

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/633 (24%), Positives = 284/633 (44%), Gaps = 20/633 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA---TG 394
           +  + + +        L + I +     I Q  +  G VL+  ++ F     +++     
Sbjct: 14  LYGVLSVLWFATADFLLPLFIVEPARLAIGQQMIGYGWVLLSAVMIFIARDRLMSIIGGK 73

Query: 395 YFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D ER  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFERRQQDYERLLLAAVVFDSTREGVLVSDAQGRIVHVNRAFMDITGYQADEVLGFNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + +R +  S V    G+   E   R    + +     IR +   +G + 
Sbjct: 134 KFKSGRH--GPEFYRQMYHSLVS--AGQWSGEIWNRRKSGEIYPQWQTIRSVKGEDGQVR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +   +  D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLSHYDALTELPNRLLLTDRISQALTSA-RFSKRGCALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D ++ IND LG  VGD+VL +   R+  +      +ARL G+ F +++ +    +  
Sbjct: 249 VDLDNFRNINDSLGHNVGDEVLKAAAERLKSVSDSEMTVARLGGDEFALLVKNCPQMVHA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  +   P  +   ++ V+ASIG + +    +T  ++L+NA+ A++ AK  G +
Sbjct: 309 AALAQQVIDAFKTPYAIAGHQLFVSASIGISLFPGDALTVEQLLRNADSALFKAKGDGRD 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  A+  +EL + Y P+  L    I G+EAL++W HP 
Sbjct: 369 VFAFYTEELTAHAQQRVQLASELRQAIAQAELRVFYQPVHDLATRRICGVEALVRWQHPS 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L    R + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSGLIVDIDAWVLNTACRQMKAWLAE-GVPIEFVAVNVSSRLFSRG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +  ++  T    + ++L  +ES VM NP+++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDLQVAQVLRDTGLESAFLELEVTESAVMENPDQAIEQLHRLREMGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G       IAI+R+II +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPNDRDDIAIVRAIITLASSLGMRVLAEGIEEASQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           L    C+  Q    A P+     +       P+
Sbjct: 608 LWENDCELGQGYWFARPM-VAQAIDW--AHAPV 637


>gi|89091836|ref|ZP_01164791.1| signal transduction protein containing membrane, EAL and GGDEF
           domains-like [Oceanospirillum sp. MED92]
 gi|89083571|gb|EAR62788.1| signal transduction protein containing membrane, EAL and GGDEF
           domains-like [Oceanospirillum sp. MED92]
          Length = 690

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 141/565 (24%), Positives = 267/565 (47%), Gaps = 10/565 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            L     S     + +    AV  +G  V   D              I G     + G  
Sbjct: 100 TLRNSSKSAQQARELKVFRNAVENTGSAVVITDPKGQIEYANQRFTEITGWNLEEIKGKR 159

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            N+L        + ++ +  + + +++   +     +  +   +W +  I P+ +  G+I
Sbjct: 160 PNFLRS-EKTTLETYKELWGTVLNHQQ--WRGTLLNKRKNGSTYWSLQNISPIHDELGNI 216

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           + ++ ++ DI++ K+    +   A+ D LT + NR+SF   L   LD           ++
Sbjct: 217 INFVSVSEDISQIKEHDAQMEKMAYYDPLTNLGNRRSFRRTLDQYLDSPQEQG--LNALL 274

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K+IND +G   GD +L ++  R+    +    + RL G+ F II  + N+   
Sbjct: 275 LLDLDHFKQINDTMGHEAGDALLTTIASRLNFCTRQRTSVFRLGGDEFTIIFRNCNDRTH 334

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + +    +   +A PI++   EI++T SIG          +S++L+NA+LAMY+AK  G 
Sbjct: 335 VIERTNEVLSLLAQPIHIGPHEISITVSIGITLIGLDSPDASDLLRNADLAMYYAKKSGR 394

Query: 690 NHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +   +       + I+ DL  A++ ++L LVY P I   + +I  +EAL++WDHP
Sbjct: 395 NTFAFYEQHMDEEAQRTLSIEHDLRSALDGNQLRLVYQPQISADNGKITAIEALLRWDHP 454

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I   EF+  AEE  +I  I  +++    +   + +D   +PPI + +N++++   D
Sbjct: 455 LDGPIPPDEFIPHAEETGLIIPIGRWVMAEACKAAKAIQD-LGLPPIKVCVNLSTRQFDD 513

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   ++  I  +   P  ++L  +ES++M +   +  +L  +++ GISL +DDFGT  
Sbjct: 514 PALISHIEEAIETSGLDPRWLELEITESMLMRDMSTAIDILNSIKQKGISLAIDDFGTGY 573

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D +K + S +         +AI  +II M K +  +++A+ +  +  + 
Sbjct: 574 SSLSYLKKMPVDLLKIDRSFLQDIPSDRDNMAITSTIIAMTKQLGLSVVAEGVENQAQMA 633

Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL 950
            L R  C  +Q   ++ P+      
Sbjct: 634 FLNRNQCTLMQGYLISQPVSLTQFT 658


>gi|254474073|ref|ZP_05087465.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Pseudovibrio sp. JE062]
 gi|211956769|gb|EEA91977.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Pseudovibrio sp. JE062]
          Length = 728

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 132/578 (22%), Positives = 259/578 (44%), Gaps = 8/578 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            F   + V       + +    E+ +  +     ++           +    A  L   +
Sbjct: 135 RFLEQELVNVEQQSKEALRDSREQLAQVIDSVPAMITTSTRDGLCAFSNAAWARFLNSTT 194

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   +         R+  R +        R    YE   R         I+   P+
Sbjct: 195 AELVG--EDTYGKFDKFTRERNRRLDRKVFITGRALPPYEIEQRNHAGDIFHFIVTKSPL 252

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++ G+    +  A +I+++K++   +L  A  D LTG+PNR    +R+   +     + 
Sbjct: 253 LDAEGNTTHVVTTATNISDRKRAEAHLLHIAHHDALTGLPNRTMLGERIDEEIFQC-RNS 311

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +  ID+D++K IND LG   GD +L  L  R+   +   D++ARL G+ F I+  
Sbjct: 312 GRSFALHFIDLDRFKSINDALGHRTGDRLLEVLAERLLRCVDGSDLVARLGGDEFAILQT 371

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +S +   FA  +   +  P ++  +E+  +AS+G   +    + S E+L+ A++AMY
Sbjct: 372 DLKSSEEAMRFAQHLVSVVEEPFHISGKELQTSASVGITKYPEDGLNSEELLRCADMAMY 431

Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            +K  GGN    F  ++     + V ++ +L  A+E+ +L L Y P I L   EIVG EA
Sbjct: 432 QSKADGGNTFHLFSTKMDHHVKETVALEAELRNAIEHDQLELFYQPQIDLRTNEIVGAEA 491

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+ P +G ++ + F+  AEE+ +I  I  +++    +    W D     P  I +NI
Sbjct: 492 LLRWNRPDYGVVAPNVFLGTAEEVGLILPIGEWVIFAACQQAKKWMDMGLETP-RIAVNI 550

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +        + + ++  +        ++++  +E++V+   + +   L  +R++GI++++
Sbjct: 551 SPTQFRKQNVPQLLKDALVSCSLPADKLEIEITENIVLHGSDATVRDLREIREMGIAISI 610

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL     D +K +               I+++I+ + K+++ +IIA+ +
Sbjct: 611 DDFGTGYSSLAYLSRYSVDCLKIDRCFTRDMMTDPNNTVIIKAIVGLGKSLDLSIIAEGV 670

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                 + L   GC+  Q      P+      +LL+E+
Sbjct: 671 ETREQAEYLKDAGCEMAQGYLFGKPVPAEDFARLLEEQ 708


>gi|146339964|ref|YP_001205012.1| hypothetical protein BRADO2968 [Bradyrhizobium sp. ORS278]
 gi|146192770|emb|CAL76775.1| Conserved hypothetical protein; putative diguanylate cyclase
           (GGDEF)/phosphodiesterase (EAL) with PAS domains
           [Bradyrhizobium sp. ORS278]
          Length = 838

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 147/569 (25%), Positives = 259/569 (45%), Gaps = 31/569 (5%)

Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
            +        L          ++D +     +      A   G     + G      W  
Sbjct: 280 ALKRREASFRLLFDANPLPMGIFDTET-GRILKVNAAAAAHYGYDRDRLLGMTIWELW-- 336

Query: 455 YIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                    D       L +     R     E+R   AD     ++   R + + +G   
Sbjct: 337 ---PESETTDLGEAMARLTA-----RDDFHREWRHYTADGSLIDVLAYGRRI-SYDGRDG 387

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + I  DITE++K    I   A  D LT +PNR+ + +RL   L            V+ 
Sbjct: 388 FLVAIV-DITERRKVEARIAHMAHHDGLTNLPNRELYQERLRQAL-QPGPGGPKPIAVLC 445

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +ND LG  +GD +L ++  R+ E +   D+ ARL G+ F +IL +  +  + 
Sbjct: 446 VDLDLFKNVNDSLGHPMGDRLLQAVADRLRERVHGGDLAARLGGDEFAVILANAPSLNEA 505

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +DFA  + ++++ P  +  +E+ + ASIG A   S   TS +++KNA++A+Y AK  GG 
Sbjct: 506 SDFAAGLIQALSAPYEIDGQELVIGASIGIALAPSDGSTSEQLMKNADMALYRAKEEGGG 565

Query: 691 HVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F          R  ++ DL  A    E  L Y P++ L    I G E L++W HP+
Sbjct: 566 VHRFFEKDMDLQAQKRRDMEHDLRHAFAEGEFELYYQPLVELATNTISGFECLLRWRHPE 625

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS +EF+ +AE++ +I  +  ++L    R+  +W D      I + +N++       
Sbjct: 626 KGMISPAEFIPVAEDIGLIVPLGEWVLREACREAATWPD-----DIKVAVNLSPVQFRSR 680

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +   ++++   P+R++L  +ES+++   E +   L +LR +GI +++DDFGT  S
Sbjct: 681 NLVQVVMQALAQSGLQPARLELEITESILLAETEANLATLHQLRALGIRISMDDFGTGYS 740

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   PFD +K + S +    ++    AI+R+I  + K++  T  A+ +     +  
Sbjct: 741 SLSYLRSFPFDKIKIDRSFVKDLAQRSDCLAIVRAISGLGKSLNITTTAEGVETSDQLDW 800

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L   GC+ +Q    ++    + I  LL  
Sbjct: 801 LRAEGCNQVQGFLFSAARPASEIAGLLAR 829


>gi|261419676|ref|YP_003253358.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|319766494|ref|YP_004131995.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
 gi|261376133|gb|ACX78876.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|317111360|gb|ADU93852.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
          Length = 659

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 148/576 (25%), Positives = 265/576 (46%), Gaps = 16/576 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V++           +     R  L V  S D V  +   R+     P           
Sbjct: 89  LCVLRRQAEESGLQARLAEAERRLQLIVEHSNDYVLIFSPNRELSYIPPSWKRKTN---K 145

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       L ++H +D       L         +   EFR +    ++ WM  + + + 
Sbjct: 146 RLPVSYEEVLTFVHPDDAPVVAQKLAELYDTYETQ-SAEFRKQGEKGEWVWMEAQGKAII 204

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +   I    +I+E+K+  E +   A+ D+LTGI NR  F   +  ++        
Sbjct: 205 DEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERHIHELIA-----SQ 259

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +  +D DK+K IND      GD  L    +R+   L+  D  AR+ G+ F ++L +
Sbjct: 260 TPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGDEFVLLLPN 319

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +  +   A  +  S   P    ++ I  T SIG A +        +++K A+ A+Y 
Sbjct: 320 ITKTE-MTALAERLVSSFHEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVMKYADQALYE 378

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            K RG N    +R +  R     I++DL  A+   +LYL Y P ++L   + +G+EAL++
Sbjct: 379 VKERGRNGYAFYRPTEHRQAV--IEQDLPFAIMRGQLYLCYQPKVQLAKGKAMGVEALLR 436

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G+I   +F+ +AEE   I  I L++LE+  R +  W  +   P + + +N++  
Sbjct: 437 WRHPSLGDIPPLDFIPLAEESGFIFEITLWVLEQACRQVKEWEKKF--PGLKLAVNLSPF 494

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   EL E ++ ++ +T  +P+R+ L  +ES +M N E  R +L  L+++G+   +DDF
Sbjct: 495 LLNRPELIEHVKRILRETGLAPNRLILEVTESGLMENIETGRHILTELQRLGVQAAIDDF 554

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+Y+  +P   +K + S + G  E      I+ +II +AK+++  ++A+ +  E
Sbjct: 555 GTGFSSLAYIRNLPVSLLKIDRSFIQGIAENSKDATIVDTIIHLAKSLDIEVLAEGVETE 614

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             +  L++M CDY Q  + +  L    + + L+E  
Sbjct: 615 SQVMLLSQMHCDYAQGFYFSRSLEAKKLQQWLEEYN 650


>gi|222109640|ref|YP_002551904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax ebreus TPSY]
 gi|221729084|gb|ACM31904.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax ebreus TPSY]
          Length = 790

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 133/583 (22%), Positives = 264/583 (45%), Gaps = 15/583 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
             V+Q +              +R  LA   V  + + V   D     ++  P +  ++G 
Sbjct: 210 VCVLQSLREVHAARDAQALSEQRWRLAATVVDNTIEGVVVTDADGRILSVNPAVTRLMGY 269

Query: 441 ASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               + G   R +    H      F   +   +    G  Q E   R  + +     + +
Sbjct: 270 TEEELLGQNPRVFKSGRH---GPAFYEAMWDTMRQ-TGHWQGEIWNRRKNGEVFPERMSL 325

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +  ++G +  Y+ +  DI+E+K   + +   A  D LTG+PNR  F ++L + +  + 
Sbjct: 326 SAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAHCDPLTGLPNRAWFGEQLDSAVRQAQ 385

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            D   +  ++++++D++K +ND  G AVGD+VL  +TR++ + L+  D+L RL+G+   +
Sbjct: 386 -DSGEQMALLLLNLDRFKDVNDSYGHAVGDEVLRHITRQVEQSLRPGDLLGRLAGDEIAV 444

Query: 620 ILISENNSLKIADFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +     ++   A  A  +  + + P       ++ V  S+G   + +   T+  +L+ A 
Sbjct: 445 LARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVVGVSVGICMFPAHARTTEALLQGAH 504

Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            ++Y AK RG      F  S      +R+ I+  L +A+    L L Y P + ++   I+
Sbjct: 505 SSVYGAKARGRGAYCFFDESLIQAARERLEIEARLRVALAQGHLRLYYQPQVCIVTGRIM 564

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W  P+ G IS + F+ +AE   +I  +  +++         WR     P I +
Sbjct: 565 GAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQWVMRAACEQGQRWRADGL-PEIRL 623

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++ +     ++       +  + +    ++L  +ESV+   P+  R +L RL+++G+
Sbjct: 624 AINLSPRQFQLTDVAACAAEALKASGFPARCLELELTESVLAERPDEIRAVLQRLQQLGV 683

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S L++L   P D +K +   +     +   +AI  +I+ M  ++  +++
Sbjct: 684 RMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPRSADDMAISAAIVAMGHSLGLSVL 743

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +     +  L   GCD  Q    + PL      +LL+   
Sbjct: 744 AEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFARLLQAHN 786


>gi|83747638|ref|ZP_00944674.1| Signal transduction protein EAL [Ralstonia solanacearum UW551]
 gi|83725690|gb|EAP72832.1| Signal transduction protein EAL [Ralstonia solanacearum UW551]
          Length = 580

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/567 (26%), Positives = 263/567 (46%), Gaps = 23/567 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    + +   D  R      P  A +LG++  ++ G          I++ D     +D
Sbjct: 1   MVNALTEGLLVCDAQRRVTYANPSAARLLGVSLDTLVGLRLPEAVGAAIDEFDTPIRDID 60

Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513
                 +   R +L   F +R  D +  W+     P+    G+                +
Sbjct: 61  WPDGDVLADGRPQLNQIFGLRCLDGRTVWVSTNWTPLYAEAGEPATASPAGRHAQPYAVL 120

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D+
Sbjct: 121 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-GTRVSVMFLDL 179

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG   GD +L  +  R+    +  D +ARL G+ F ++L S  + +     
Sbjct: 180 DRFKNINDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGMGTRRV 238

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P ++  +E+ V  SIG A         + +L+ A+ AMY AK RG N+ +
Sbjct: 239 AERILAAIGAPFHIEGQELFVGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 298

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W+   +G 
Sbjct: 299 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSADFGR 358

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L 
Sbjct: 359 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++ +      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S LS
Sbjct: 418 GMVRGALTNSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 477

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L  
Sbjct: 478 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLRE 537

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCD  Q   +  PL   ++  L++E 
Sbjct: 538 IGCDEYQGYLLTRPLEPAAMHDLVREH 564


>gi|114319826|ref|YP_741509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226220|gb|ABI56019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1051

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 148/647 (22%), Positives = 280/647 (43%), Gaps = 24/647 (3%)

Query: 322  YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
               +      +G+              I  + ++ +  +    DIIQ             
Sbjct: 416  AGPWQAAAARRGFRSVAAFPLFQSDDCIGALAVYSSEERFFSADIIQLMAEMT------- 468

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATIL 438
                 +   L      Q   +  E+  LA      S + +   D  +  +          
Sbjct: 469  ---GDLSFALDNIEREQARKAAEEQMRLAEEVFEHSTEAIIITDARQRIMRVNRAFTERT 525

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            G     + G   + L   H   +  +R IL     +  G  + E   R    +   + + 
Sbjct: 526  GYVPDEVLGRRPHMLRSPHHT-QQFYRRILARLRRH--GFWEGEIWNRRKGGENAPLWLT 582

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +  + +  G I  YI +  D+TE K     I   A  D +TG+PNR    DRL   L  +
Sbjct: 583  LSVVRDEAGRITHYIAVGLDLTETKDREAHIRYLAQHDPVTGLPNRGLLADRLGQALRRA 642

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              D + R  ++ +D+D++K IN+ LG   GD+VL ++ +R+ + +     ++R+  ++F 
Sbjct: 643  Q-DQHYRLALLSLDLDRFKIINETLGHVAGDEVLQTVAQRLQDHVNGAGTVSRIGSDQFL 701

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            I+L   +   + A  A  +   +A P++L  +E+T ++ +G A +         +  +A+
Sbjct: 702  ILLPEIHKPTEAAQAAERLMACVAEPLDLSGQELTPSSVVGIALYPEDGDNLETLHSHAD 761

Query: 679  LAMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM  AK   G+    F    ++S   +R+ ++  L  A++  E  L Y P + L D  +
Sbjct: 762  AAMSMAKQASGHEGYRFFSSDMTSRARERLSLESRLRRALDRGEFRLHYQPQVSLADGTL 821

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             G+EAL++W     G+IS + F+ IAEE  +I  +  ++L    R   +WR     P + 
Sbjct: 822  TGMEALLRWHAGDEGDISPARFIPIAEETGLIVPLGRWVLGEACRQNRAWRQAGL-PALP 880

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKI 854
            + +N++   L  +++   ++  +  +      + L  +ES+ +  +          LR++
Sbjct: 881  VSVNLSVVQLRRSDVVADVRRALETSGLPGDGLHLEVTESLFLSEDDPAVVTGFQTLREM 940

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            GISL +DDFGT  S L YL  +P   +K + S + G   +    AI ++II +A+++   
Sbjct: 941  GISLAIDDFGTGYSNLGYLKRLPIAKLKIDQSFVRGIGDSGHDTAINQAIISIARSLGLG 1000

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +IA+ +    +++ L  +GCD IQ  + + PL      +L+    PL
Sbjct: 1001 VIAEGVETAAELRVLQALGCDEIQGFYYSRPLDAERAGQLMAAPPPL 1047



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 9/181 (4%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV-LGS 414
           +A        ++  A   G++L        +    L T   +Q   +  ER    +   S
Sbjct: 137 LARWSFTTGLLLVVAAGTGIILWWRGHVHGLEARRLRTELMAQADLAARERAYETLAENS 196

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            DI+   D     +     +    G+      G     + +     R       +  +  
Sbjct: 197 PDIIVRLDRDLRHLYVNRALEAFTGIPREHYLGRTHEEVGF-----RGKLLATWERHLNQ 251

Query: 475 ---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                      F     + +       I P ++  G+I   + I++D+T   ++ E I  
Sbjct: 252 ALESGEPGTMTFSHPDREGRVRHFEALIVPETDDTGNIAHVLCISHDVTGHVQAREEISR 311

Query: 532 N 532
            
Sbjct: 312 L 312


>gi|297537600|ref|YP_003673369.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256947|gb|ADI28792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera sp. 301]
          Length = 861

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 144/561 (25%), Positives = 248/561 (44%), Gaps = 13/561 (2%)

Query: 403 DGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
             E   LA      S + +   D     +   P    + G     + G     L     +
Sbjct: 304 AEEELKLAGLVYKNSSEAMAVTDEEGRILAINPAFTKMTGYEFDEVRGKTHAMLQS-DQH 362

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             D +  + DS      G+ Q E   +  + + +   + I    + +G + R++ + +DI
Sbjct: 363 SVDFYIAMWDSIA--VTGQWQGEVWNKRKNGEIYPEWLTINTSYHKDGSVHRHVALFSDI 420

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K++ E IL  A  D LT +PNR+ F DRL   +  S  + +    ++ +DID +K++
Sbjct: 421 SAIKEAEELILNQANYDQLTKLPNRRLFNDRLEQEIKKSQREKHSTV-LLFVDIDHFKEV 479

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +GD +L+    RI   ++  D +ARL G+ F IIL    ++L IA  A  +  
Sbjct: 480 NDTLGHDMGDRLLIDAAMRIKSCVRDSDTVARLGGDEFTIILTDLKDNLSIAQIAQNIIS 539

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           S++   +L  R+  V+ASIG A +        E+LK A+ AMY AK  G      F   +
Sbjct: 540 SLSEVFHLGTRKAFVSASIGIAFYPEDATNIVELLKIADQAMYVAKSAGRGCYRFFTKAM 599

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R+ +  DL  A+ + +  + Y PI+ L    I   EAL++W HP+ G +S + F
Sbjct: 600 QQESDFRIRLSNDLHQALHSKQFTVHYQPIVELNTGHIHKAEALLRWQHPELGAVSPAIF 659

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL-DNELCEGMQA 816
           + IAE+   I  I  ++  +        +         I +N +       +E+      
Sbjct: 660 IPIAEDNGTIHEIGNWVFTQAVNQAAHIQSLIGR-DFQITVNKSPIQFKGHDEIIHNWIT 718

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L++        + +  +E ++M         L   R+ GI + +DDFGT  S LSYL   
Sbjct: 719 LLNDINLPAKNVVVEITEGILMDVVGDIPDKLLAFREAGIKIAIDDFGTGYSSLSYLKKF 778

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S     +      A+  +I+ MA  +   +IA+ +  E+  + L  +GCDY
Sbjct: 779 DVDYLKIDQSFTRHLSLNAPEFALCEAIVVMAHRLNIKVIAEGVETELQRELLKLIGCDY 838

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + P+    +  LL++
Sbjct: 839 GQGYLFSKPVPAAELEILLQK 859



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 390 VLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                  +Q    D E         +   +         +    +   I+G +   +   
Sbjct: 168 AFRQRDKAQDALRDNETLFQAVFENAAVGIAQVSTAGHFLQINREYCRIIGYSQEEVLTN 227

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              +       D           +     +   E R    ++   W+ + ++ + N+ G 
Sbjct: 228 NFTFQQITLPEDLKIDVLNAKKLIDGESDKYIAEKRYIHKNSSIVWVNLSVQLLRNNTGQ 287

Query: 509 ILRYIGIANDITEQKKSLEG 528
            L +I    DI ++K + E 
Sbjct: 288 PLYFISAVQDIGDRKLAEEE 307


>gi|24374900|ref|NP_718943.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24349604|gb|AAN56387.1|AE015775_4 sensory box protein [Shewanella oneidensis MR-1]
          Length = 879

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 143/561 (25%), Positives = 262/561 (46%), Gaps = 15/561 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            E+ +LA      S + V   D   +          I G +   + G   R +    H  
Sbjct: 323 EEQLTLATNVFKHSFEGVVVTDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRHE- 381

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            +  F T+ ++ +    G+   E   R  D       I I  + +  G+I  ++ +  DI
Sbjct: 382 -KAFFETMWNNLL--GGGKWNGEIWNRRKDGTIFPQNITISAIYDEVGEIRYFVAVFADI 438

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + QK+S   +   A+ D LT +PNR   + +L   +  +   ++   TV  ID+D +K I
Sbjct: 439 SAQKQSEAQLAHLAYFDPLTHLPNRMKLMIQLKQEIMHAKRLNSQLATV-FIDVDLFKHI 497

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD++LV L +R+   L+  D+L+R+  + F  ++               +R+
Sbjct: 498 NDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGSDEFVALISGIQYHEDATAAINQLRQ 557

Query: 640 SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P  +     + +TA++G + + S    +  +L+NA+ AMY AK  G N+   +  S
Sbjct: 558 VFEQPFVVSTGDHLRLTATMGVSLYPSDGSNADTLLRNADAAMYRAKSEGRNNYAFYTES 617

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + + ++  L  A+E + LYL+Y P + L+  + VG+EAL++W+ P  G IS S 
Sbjct: 618 LTKESIEHLKLQSALYGALEQNALYLMYQPKVDLVTRKTVGVEALLRWNDPILGQISPSV 677

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  I L++LE   +  + W          I +N+A + L  N   E ++ 
Sbjct: 678 FIPVAEKSGLIYDIGLWVLETACQQGVHWLAAGKQFG-RIAVNVAGQQLQRNSFVEDVKR 736

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T    + ++L  +ESV+M NP+ +   L  L  +GI L++DDFGT  S L+YL  +
Sbjct: 737 ILTQTGLPATCLELEVTESVMMNNPDVAIRDLKLLGDLGIVLSVDDFGTGYSSLNYLKKL 796

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          AI +++I +   ++  I+A+ +        LT+  CD 
Sbjct: 797 PIHKLKIDQSFVRDIPFDTNNTAIAKAVIVLGHALKLEIVAEGVETAEQADFLTQNLCDQ 856

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + P     +     +
Sbjct: 857 AQGYLFSRPQLPADVEAFFTK 877



 Score = 38.0 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 3/117 (2%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +W  +           +     L    + G     L    I D   F       +     
Sbjct: 217 IWVKNTEGVYTICNQSVEKAWDLPRSDIVGKTDEDLFGKAIADI--FLNGDRLAIEAGAP 274

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  E       N   W+     P    +G++   IG+  +I++ K+ +E  L  A 
Sbjct: 275 IIVAECLDGENKNNHLWLETLKLPALTPDGELAGVIGMTRNISKHKE-VEEQLTLAT 330


>gi|120601363|ref|YP_965763.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
 gi|120561592|gb|ABM27336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
          Length = 576

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/540 (28%), Positives = 259/540 (47%), Gaps = 10/540 (1%)

Query: 419 WDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           W+            TP    I G    +           IH +D   +R      +    
Sbjct: 36  WECWESPEGRVHFVTPACQRISGFGIDNFRAHHLFIEGLIHPDDLPAWRRH-REMLTAGL 94

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
            + + E R+R A+    W+ +  R +++ +G+ L       DIT++K  L  +   A+ D
Sbjct: 95  PKAEVEIRIRTAEGGEKWLAVTSRNLTDGHGEPLGIRSSLRDITDRKMVLSQLRHQAWHD 154

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR   LDRL   L   A  +     V+ +D+D++K +ND LG A GD VL    
Sbjct: 155 PLTGLPNRALCLDRLDRALGRLARGNGELCAVVFLDLDRFKLVNDTLGNAAGDRVLRETA 214

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR+G   +  D ++RL  + F I++       +       +R++   P ++  R + VTA
Sbjct: 215 RRLGTATRSTDTVSRLGSDEFIILIEDLRGEDEARATLGRLREAQRAPFDIDGRHLRVTA 274

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714
           S+G          + E+L+NA +AM+HAK  GG+    F  S      D + ++ DL  A
Sbjct: 275 SMGVVLAR--GGNADEVLRNANIAMHHAKEHGGDAASFFHASMLEEALDLMQLEIDLHRA 332

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN E +LVY PI+ ++D  I G EAL++W HP+ G +    F+ +AE   +I  +    
Sbjct: 333 LENDEFFLVYQPIVSVVDRRITGFEALLRWRHPERGVVGPDAFIALAEHSGLIHLLGRKA 392

Query: 775 LERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           L+   R +  WR        + + +N++++ L    + E +   +  +   P  +KL  +
Sbjct: 393 LDEACRTLAKWRRVDQLFDGLTMHVNLSARQLSQTHIVEQVAEALRDSCLPPHLLKLEVT 452

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           E+++M NP+ +  +L RLR IG+ + +DDFGT  S LSYL   P DT+K + S ++  T 
Sbjct: 453 ETMLMENPDYANAVLCRLRDIGVGVCVDDFGTGYSSLSYLQRFPIDTLKVDRSFVSRMTR 512

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  I++++I +A ++   ++A+ +  E     L  + C Y Q    A PL    +  
Sbjct: 513 EPGQFKIVQAVIALAHSLGLEVVAEGVEDEEQRIMLLGLACRYAQGFLFAKPLAAEDVPA 572


>gi|330965688|gb|EGH65948.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 643

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/640 (23%), Positives = 283/640 (44%), Gaps = 18/640 (2%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++      LL   W +     + L++    RL            L+  V++       
Sbjct: 7   GALRTAVLYGLLSILWFMACDLLLPLFIEEPARLAFCHQMTGYAWVLLSAVMIFVARDRL 66

Query: 389 HVLATGYFSQGIFSDG-ERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  G        D  +R  LA      + + V   D     V        I G  +  
Sbjct: 67  RKIIGGEAHFERQQDDYDRLRLAEAVFDSTREGVLVSDAQGRIVHVNRAFVDITGYQAEE 126

Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + G     +    H    + +R +  S +    G+   E   R    + +     IR +S
Sbjct: 127 VLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VGQWSGEIWNRRKSGEIYPQWQTIRSVS 182

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G    ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +     
Sbjct: 183 GDDGQPRHFVAVFSDITAIKRSEQELAQLVHYDGLTDLPNRLLLTDRISQALTSA-RFSK 241

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D +K IND LG  VGDD+L ++  R+  L      +ARL G+ F +++ +
Sbjct: 242 RGCGLLLVDLDHFKNINDSLGHNVGDDLLRAVAERLKGLSDNEMTVARLGGDEFALLVKN 301

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
               ++ A  A  + +    P  +   ++ VTASIG + +    +++ ++L+NA+ A++ 
Sbjct: 302 CPQVVQAAALAQQVIEVFKAPFAIAAHQLFVTASIGISLYPGDALSAEQLLRNADSALFK 361

Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G +    +     +    RV +  +L  A+E  EL + Y P+  L+   + G+EAL
Sbjct: 362 AKSEGRDCYALYTEELTAHAQQRVQLAGELRQAIEQGELRVFYQPVHDLITRSVCGVEAL 421

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S  EF+ IAE+  +I  I+ ++L    R + +W  +      F+ +N++
Sbjct: 422 VRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVLSAACRQMRAWLTEGVSIA-FVAVNVS 480

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S+     +L   +  ++  T   P+ ++L  +ES VM +PE++   L RLR++G+SL +D
Sbjct: 481 SRLFSRGDLDRQVAQVLHDTGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAID 540

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L  +P   +K +   + G        AI+R++I +  ++   ++A+ I 
Sbjct: 541 DFGTGYSSLLRLKRMPVQKLKIDQGFVAGLPGDGDDGAIVRAVIALGASLGMRVLAEGIE 600

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                  L   GC   Q    A P+  + ++       P+
Sbjct: 601 QASQAAFLLENGCQLGQGYWFARPMAAH-LIDWY--HAPV 637


>gi|288942323|ref|YP_003444563.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288897695|gb|ADC63531.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 861

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 138/579 (23%), Positives = 254/579 (43%), Gaps = 13/579 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +   L      +       + +     S + +   D     +        + G + 
Sbjct: 150 RIIAVVETLRDRTSHKLAELRLRQMASVFEHSQEGIMITDPATRILDVNASFVRVTGYSR 209

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G     L    + D   +R +         GR   E   R    + +  I+ I  +
Sbjct: 210 EEALGRTPTLLKS-GLQDAAFYRALWRDL--NETGRWHGEIWNRKKSGELYPEILHINAV 266

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + +G +  YIG+  DIT+ K S   +   A  D LTG+PNR     RL   LD +   +
Sbjct: 267 QDPSGRVTHYIGMFIDITDLKNSQSRLENLAHYDVLTGLPNRLLLGYRLRQALDDAQRHE 326

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            L   V  +D+D +K +ND  G   GD +L+ + RR+ + L+  D +ARL G+ F I+L 
Sbjct: 327 RL-AAVCFLDLDNFKLVNDHHGHETGDRLLIDIGRRLRDTLRSNDTVARLGGDEFVILLN 385

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N  ++ +  + +   +A P+ +   +I +T S+G   +         +L++A+ AMY
Sbjct: 386 DLRNQEELDNVLVRLLDGVAHPVRIDALQIVITVSVGVTIYPLDDHDPDTLLRHADQAMY 445

Query: 683 HAKHRGGNHVESFRVSSFRSD---RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            AK  G N  + F   +  +       ++  +  A+++ E  L Y P + +   ++VG+E
Sbjct: 446 QAKQMGRNRYQLFDPEAANAMQSRHRELE-RIRQALQHGEFQLYYQPKVDMRLGQVVGME 504

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP+ G +   +F+ + E   +I  +  ++L      I  W  +    P+ I +N
Sbjct: 505 ALIRWRHPERGLVPPLQFLPLIEASPLIVEVGEWVLHEALGQIRQWCAEGR--PLTISVN 562

Query: 800 IASKDLLDNELCEGMQALISKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           IA+      +    +Q ++++   + P  ++L   ES  + + +  R ++   + +G+  
Sbjct: 563 IAAHHFQQRDFVLRLQTILAEHPEATPRLLELEILESAALEDIQSVRGIMTACQAMGVRF 622

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL  +P +T+K + S +       + +AI+  +I +AK     +IA+
Sbjct: 623 ALDDFGTGYSSLSYLKQLPAETLKIDQSFVRNMLEDSEDLAIIEGVIGLAKVFRKEVIAE 682

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +        L R GCD+ Q   +  P+    I   + E
Sbjct: 683 GVETPEQGLLLMRFGCDHAQGYGIGRPMPAEQIPAWMDE 721



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP------------YIH--INDRDNF 464
           +  D     +        + G+ +  + G   +W               +H  +++ D+F
Sbjct: 47  FVLDATGRVIVWNRACENLTGMPASRVLGSQDHWRAFYPECRPCLADLVLHNRLDEIDHF 106

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            T  D  +          + V        ++ I   P+ +S+G I+  +    D T  K 
Sbjct: 107 YTEYDQLLRTGCEIHAENWCVMPLQGTERYLAIDAGPVRDSSGRIIAVVETLRDRTSHKL 166

Query: 525 SLEGILCNA 533
           +   +   A
Sbjct: 167 AELRLRQMA 175


>gi|217969756|ref|YP_002354990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507083|gb|ACK54094.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 920

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 125/565 (22%), Positives = 246/565 (43%), Gaps = 19/565 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDR 461
           + +R S+ +  S + +   D     +        I G A   + G     L   +    R
Sbjct: 360 ELQRLSMVIEQSPESIVITDTAGCILYVNEAFQRITGYARDEVLGRNPRILNGGLTP--R 417

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             +  +  + +       + EF     D   +  +  I P+ ++ G +  Y+ +  DIT+
Sbjct: 418 ATYEQMWATLLAGE--VWRGEFHNVRKDGSAYLELATIAPIKDAGGTVTHYVAVKEDITQ 475

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K+S   +   A+ D LTG+PNR    DR+   +      ++    +M++DID+++++ND
Sbjct: 476 RKQSEALLHRLAYFDALTGLPNRALLHDRIAQAIRSGVRRESF-GMLMLVDIDRFRQLND 534

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636
            LG A GD +L  +  R+   ++  D +AR   + F +++     +           A  
Sbjct: 535 TLGHAAGDRLLCEVAARLRASVREEDTVARHGDDDFAVLVERIGETEADALSHAEHVARK 594

Query: 637 MRKSIAMPINLLERE---ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +++++  P  L   E      T S G + +     +   +LK AE+A+Y AK  G + V 
Sbjct: 595 LQRALQQPYVLGGTEGDRHFATLSFGISLFHDGVSSLESLLKQAEVALYRAKQDGRDIVR 654

Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F             ++  +  A+E +   L + P +      ++G EAL++W       
Sbjct: 655 FFNPEMQAVVDAHARLEARMHEALEANAFRLFFQPQVNRR-GVVIGAEALLRWPLDGGAM 713

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S +EF+ +AE+   I  + L++L      +  W+       + I +N++++     +  
Sbjct: 714 VSPAEFIPLAEDTGHIVRLGLWVLRSACAQLARWQMNEGTRHLKIAVNVSARQFHQPDFV 773

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  +      P R++L  +ES ++ + + +   +  LR +GI   LDDFGT  S LS
Sbjct: 774 ASVKDSVRAAAIDPCRLELELTESAILSDVDETIRRMNELRALGIRFALDDFGTGYSSLS 833

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +PFD +K + S +    E     AI+ +I+ ++  +   ++A+ +        L +
Sbjct: 834 YLKRLPFDQLKIDQSFVRDMAEDESSEAIVLAILSLSHALGLEVVAEGVEMPEQRDFLRQ 893

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
            GCD  Q      PL   +    L+
Sbjct: 894 HGCDSFQGYLFGKPLPMEAWGDFLE 918


>gi|88706729|ref|ZP_01104431.1| sensory box/GGDEF/EAL family protein [Congregibacter litoralis
           KT71]
 gi|88699050|gb|EAQ96167.1| sensory box/GGDEF/EAL family protein [Congregibacter litoralis
           KT71]
          Length = 793

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 132/566 (23%), Positives = 247/566 (43%), Gaps = 14/566 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455
                    + +     SG+ +   D            + I G +     G   + L   
Sbjct: 233 EHAARRGLFQAAAVFKNSGEGILISDKDGRIRDVNAAFSRITGYSREDAIGQPTSLLRSG 292

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  D   F   +   +  R G  + E   R         ++ I  +   +G    ++ I
Sbjct: 293 RHDGD---FYADMWQTL-QRDGVWRGEIWNRRKSGTVFPELLTISKIDGPDG---GFMAI 345

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI++ K++ E +   A  D LT +PNR    + L   +  +    +    V  +DID 
Sbjct: 346 FTDISQLKETEEQLQKLAHYDPLTNLPNRFLVNECLEHSIRRAQRRSD-HLAVFFLDIDS 404

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG   GD +L +   R+  LL+  D + R+ G+ F ++L   +        A 
Sbjct: 405 FKNINDSLGHFAGDKLLKTTANRLKALLRDDDSVGRIGGDEFLMVLDDISTPDDATHIAE 464

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++  P+ L  R I+V+ASIG + +     T+  ++ NA+ AMY+AK +G +    +
Sbjct: 465 KIIGALRKPMILEGRSISVSASIGISIYPEDGQTAETLMSNADAAMYNAKDQGRDTFRFY 524

Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              ++      V+I   L  AV   E  L + P +   +  ++GLE L++W H   G +S
Sbjct: 525 SEHLTRQAFQNVLIDSALREAVSRQEFRLAFQPQVNTDNGSLLGLEVLLRWHHLTLGTVS 584

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            S+F+  AE   +I+ I  ++LE+       W  +       + +N+++      +    
Sbjct: 585 PSQFIPQAERTGLIRDIGHWVLEQSCLQGSRWIAEGLQFG-HLAVNVSAPQFRAEDFVAQ 643

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +++ T + P +++L  +ESV++ + E+    +  LR +G+   +DDFGT  S LSYL
Sbjct: 644 VRKVLADTEFPPEKLELELTESVLVHDTEKLIENMHELRALGVMFAIDDFGTGYSSLSYL 703

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +      +    I  +++ + K +   +IA+ I  E   + L  +G
Sbjct: 704 KRMPIDRLKLDKSFVDHIVSDDSDRIIAGAVLALGKAMGLPVIAEGIEQEAQARVLQSLG 763

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C + Q      P+    I  +L+   
Sbjct: 764 CKHFQGYLYGRPMYGPRIEVVLRAHL 789



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 1/116 (0%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +G   W WD        + D   +L + +  +   +   +  I   D   F++ +   + 
Sbjct: 11  AGIGTWRWDASSGEFQLSDDGIAMLQVRADELPLGVDTIIGQILDEDVAGFQSAMAELIT 70

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              G ++ +FR    D    W     R  ++ +  +    G+  D+T Q+ + +  
Sbjct: 71  AP-GLIEVDFRALLDDGDIRWYRAIGRSYASPDASVTHAAGVLLDVTTQRSAEQYY 125



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           A            E+   A     + +     I  +   T      +LG     + G   
Sbjct: 109 AGVLLDVTTQRSAEQYYDAFFQQPNGMHLVASIDGEIRLTNSAWQLVLGHGDAELQGQ-- 166

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           N L  +H  DR+     +   +      L +E R R  D  +  +               
Sbjct: 167 NLLDLVHPEDREATLAEMGK-LSQGMYTLYFENRYRHRDGSYRVIAWSAATAERE----S 221

Query: 511 RYIGIANDITEQKKSLEGILCNA 533
               +  DI+++  +  G+   A
Sbjct: 222 VICAVGRDISQEHAARRGLFQAA 244


>gi|237654169|ref|YP_002890483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|237625416|gb|ACR02106.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 821

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/586 (25%), Positives = 279/586 (47%), Gaps = 5/586 (0%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+   +   +      +  + +  ER +LA+ GS D +WDWDI  D V  +     ILG+
Sbjct: 236 LMAEALQNRIAELQDTAVRLRASEERHALALRGSNDGLWDWDIDADDVYYSERFCQILGV 295

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             G++     + L Y+H  +RD +R  L   +         E RVR  D  + W+++R  
Sbjct: 296 QPGTLSNRPEDMLAYLHPYERDAYRQRLVEHLKGDSNHFIMELRVRLPDGAYRWVLMRGV 355

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              + N    R  G   DI  +K++ + ++ +A  D LTG+PNR  F++     L     
Sbjct: 356 ADRDENLHAYRMAGSLGDIDLRKRAEQQLVHDALHDGLTGLPNRAMFIEHANRALAQRRR 415

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D  +  ++ I+++++  +ND  G  VGD++L  +   I  L++  D+ AR+ G++F ++
Sbjct: 416 GDLTQIAILAINLERFSLVNDSYGHLVGDELLRRIGAHIAALMRDGDVCARVGGDQFAVL 475

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L    +S+        +    A   +   +++     +G A   + +  +  +L++A+ A
Sbjct: 476 LNGVESSIDALRICEQLVALPAFAPDDDGQQLHPRCRVGVAISDNEREDAESLLRDADNA 535

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           ++ A+      +E F      +    +  + +L  A+    L + Y PI+ L +      
Sbjct: 536 LHKARRSERGPIEFFHTEMHAAAVRALQVEAELRKALTQGGLQVWYQPIVELANLRTTSF 595

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797
           EAL++W HP  G +S  EF+ +AE L +I  I   +LER+  D+  W        P+ + 
Sbjct: 596 EALVRWPHPTLGLLSPGEFIPLAEALDLIHDIGTLVLERVCADLREWAGRLPADAPLRVS 655

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++ L   +L   + A I +   +  RI+   +ESV+      +   L  LR  G+ 
Sbjct: 656 VNLSARQLARPDLAAELLAAIDRVGVARERIRFEVTESVLAHPDGPAIDHLHALRAAGLD 715

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S LSYL  +P + VK +GS +      ++  AI+R  I +A ++  T++A
Sbjct: 716 ILIDDFGTGYSTLSYLHTMPCNQVKLDGSFVRSLPYDQRLRAIVRHSIELAHDLGMTVVA 775

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           + I  E  ++ L  MGCD+ Q    + PL  ++    L    P  +
Sbjct: 776 ECIEDEAQLEILRAMGCDFGQGYLFSRPLDRDATFNRLHNPAPERR 821


>gi|257482523|ref|ZP_05636564.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|298484693|ref|ZP_07002796.1| Sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298160833|gb|EFI01851.1| Sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|331012829|gb|EGH92885.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 642

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 153/623 (24%), Positives = 287/623 (46%), Gaps = 17/623 (2%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      + L   I +       Q       VL+  ++ F     ++ ++   
Sbjct: 14  LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              Q   +D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + ++ +  S +    G+   E   R    + +     IR +   +G   
Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G  
Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  AVE  +L + Y P+  L+   I G+EAL++W HP+
Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +   + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   GC   Q    A P+   +I
Sbjct: 608 LLGNGCQLGQGYWFARPMVAQAI 630


>gi|119897835|ref|YP_933048.1| GGDEF/EAL/PAC/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119670248|emb|CAL94161.1| GGDEF/EAL/PAC/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 828

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 146/612 (23%), Positives = 263/612 (42%), Gaps = 14/612 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV--- 411
            M     +  D     LV     I +       + ++  G       +  ER   A    
Sbjct: 204 GMRQMLEIVEDGQGRRLVFEATRIPLFDSVGQRKGIVVVGRDITERRAAEERLRQAATVF 263

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDS 470
             + + +   D      +  P  + I G A   + G   R      H  D   +R +  +
Sbjct: 264 DNTVEGISITDRDGIIQSVNPAFSRITGYAEAEVIGCHTRILQSGRHGADY--YRAMWRT 321

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R G+ Q E   R    + +   + I  + +  G++  Y+ + +DI++ K +   + 
Sbjct: 322 LA--RTGQWQGEIWNRRKTGEVYPQWLTIGTVRDDEGEVSNYVAVFSDISQIKDAQSQLE 379

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR    DRL   +  +         V+ +D+D +K +ND LG   GD 
Sbjct: 380 RLAHYDPLTGLPNRALLGDRLAHAISRARRA-GTSVAVLFLDLDGFKNVNDSLGHPAGDR 438

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R+   L+    ++R  G+ F ++L        +++ A  +   IA P++L   
Sbjct: 439 LLQIIAERLCGALRSEGSVSRFGGDEFAVVLEDVVRGEAVSEVAEHLIAEIARPLDLDGH 498

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708
              V+ASIG A +      ++ ++K A+ AMY +K  G N               R+ ++
Sbjct: 499 GAHVSASIGIALFPRDGDDATTLIKAADTAMYRSKALGRNTFSFHHEDMAQAAHRRLSLE 558

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+E     L Y P I L    + G EAL++W  P+ G +S +EF+ +AEE  +I 
Sbjct: 559 HGLRQALEQGRFELWYQPQIDLRTGVLAGAEALLRWRDPERGLVSPAEFVPLAEETGLIL 618

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I L++LE   R   +W D    P   I +N+A+  +      + +  ++S +   P+ +
Sbjct: 619 PIGLWVLEEACRAGRAWLDVGLAPG-RIAVNVAAPQIERGGFDQAVARVLSASGLPPAAL 677

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E  ++ + E +RL +  LR +G+ + +DDFGT  S L+YL  +   T+K +   +
Sbjct: 678 EVEITEGSLLRSAENARLAVAALRALGVGVAIDDFGTGYSSLAYLKNLAVQTLKIDREFV 737

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                    +AI R+II M +++   ++A+ +        L   GC   Q    A P+  
Sbjct: 738 RDLPHDAGNLAITRAIIAMCRSLGFGVVAEGVEEPAQAAFLVSEGCTLAQGYLFAKPMPG 797

Query: 947 NSILKLLKERFP 958
               + L+   P
Sbjct: 798 AEFAEWLRTYRP 809



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +      V+  D     +         LG  +  + G     L      D      
Sbjct: 6   LQNVLDAIPAPVFFKDAAGRYLGCNTAFLDFLGYTADRILGKSVFELS---PPDLAARYH 62

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             D  +    G   YE +V+ A  +   ++       ++ G +   +G   DIT++K++
Sbjct: 63  AQDQALFDNPGEQVYEAQVQNARGERREVVFYKATFHDTEGKVAGLVGTILDITDRKQA 121



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 2/126 (1%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTIL 468
           +    D V+  D     + T      + GLA     G     L        +        
Sbjct: 136 IQALPDAVFLKDGEGRWLVTNGAAQALFGLAERDWFGRTDLELGSEDPARAEVHAVCARN 195

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D  V  + G  Q    V     +         P+ +S G     + +  DITE++ + E 
Sbjct: 196 DELVWQQGGMRQMLEIVEDGQGRRLVFEATRIPLFDSVGQRKGIVVVGRDITERRAAEER 255

Query: 529 ILCNAF 534
           +   A 
Sbjct: 256 LRQAAT 261


>gi|46581467|ref|YP_012275.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450889|gb|AAS97535.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 576

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/540 (28%), Positives = 259/540 (47%), Gaps = 10/540 (1%)

Query: 419 WDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           W+            TP    I G    +           IH +D   +R      +    
Sbjct: 36  WECWESPEGRVHFVTPACQRISGFGIDNFRAHHLFIEGLIHPDDLPAWRRH-REMLTASL 94

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
            + + E R+R A+    W+ +  R +++ +G+ L       DIT++K  L  +   A+ D
Sbjct: 95  PKAEVEIRIRTAEGGEKWLAVTSRNLTDGHGEPLGIRSSLRDITDRKMVLSQLRHQAWHD 154

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR   LDRL   L   A  +     V+ +D+D++K +ND LG A GD VL    
Sbjct: 155 PLTGLPNRALCLDRLDRALGRLARGNGELCAVVFLDLDRFKLVNDTLGNAAGDRVLRETA 214

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR+G   +  D ++RL  + F I++       +       +R++   P ++  R + VTA
Sbjct: 215 RRLGTATRSTDTVSRLGSDEFIILIEDLRGEDEARATLGRLREAQRAPFDIDGRHLRVTA 274

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714
           S+G          + E+L+NA +AM+HAK  GG+    F  S      D + ++ DL  A
Sbjct: 275 SMGVVLAR--GGNADEVLRNANIAMHHAKEHGGDAASFFHASMLEEALDLMQLEIDLHRA 332

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN E +LVY PI+ ++D  I G EAL++W HP+ G +    F+ +AE   +I  +    
Sbjct: 333 LENDEFFLVYQPIVSVVDRRITGFEALLRWRHPERGVVGPDAFIALAEHSGLIHLLGRKA 392

Query: 775 LERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           L+   R +  WR        + + +N++++ L    + E +   +  +   P  +KL  +
Sbjct: 393 LDEACRTLAKWRRVDQLFDGLTMHVNLSARQLSQTHIVEQVAEALRDSCLPPHLLKLEVT 452

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           E+++M NP+ +  +L RLR IG+ + +DDFGT  S LSYL   P DT+K + S ++  T 
Sbjct: 453 ETMLMENPDYANAVLCRLRDIGVGVCVDDFGTGYSSLSYLQRFPIDTLKVDRSFVSRMTR 512

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  I++++I +A ++   ++A+ +  E     L  + C Y Q    A PL    +  
Sbjct: 513 EPGQFKIVQAVIALAHSLGLEVVAEGVEDEEQRIMLLGLACRYAQGFLFAKPLAAEDVPA 572


>gi|307823056|ref|ZP_07653286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307735831|gb|EFO06678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 751

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 145/571 (25%), Positives = 252/571 (44%), Gaps = 10/571 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A     + I  +  R    V  S DI+  +D    RV   P         +  +    
Sbjct: 165 LTAEQAMLEEIALNERRFRSLVENSPDIIVRYDRDCRRVFVNPAYIRETDTPAELVLNKS 224

Query: 450 RNWLPYIHIND-RDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +       +  R+ +R  L   +      ++  E+     D Q     + +    +++G
Sbjct: 225 TDDANVWRPSMPREEYRKRLQQVMDTGVTDQILLEW--VRQDAQRVSHEMYVVAEYDADG 282

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           D++  + I  D+T  K++   +L  A  D LTG+PNR+ F DRL   +  +  +D     
Sbjct: 283 DVIGTLAIGRDVTRSKEAERQLLHQASYDILTGLPNRRLFGDRLGKDVAKAKRND-FGLA 341

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D++K++ND LG AVGD +L    +RI   ++  D +AR +G+ F +IL     S
Sbjct: 342 VLFIDLDRFKEVNDTLGHAVGDLLLKKAAQRICSCVRESDTVARFAGDEFVVILPEVGES 401

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +   A  +   +A      E    V+ASIG A +      +  ++  A+ AMY AK  
Sbjct: 402 GALQRIAQNIVGVMAQSFTFGEHSAYVSASIGIAIFPQDGDNADTLVGCADQAMYSAKKT 461

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N+   F          R+ +  DL  A+   +L + Y PII ++   +V  EAL++W 
Sbjct: 462 GRNNFCFFNRQMLELAHQRMQLGNDLHDALGKGQLEVFYQPIIDVVSGRVVKAEALLRWR 521

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKD 804
           HP+WG +    F+ IAEE  +I+ I  ++    A  +  W   +       I +N++ + 
Sbjct: 522 HPEWGMVPPDRFIPIAEETDLIQEIGAWVFREAADTVKRWNALSANQGQRQISVNMSPRQ 581

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                  + +   +      P+ I +  +E +++ N       L +LR  GI ++LDDFG
Sbjct: 582 FTRGRGEQIIINYMQAYGLDPAHIAVEITEGLLLDNCPGVTQKLEKLRAAGIEISLDDFG 641

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S ++YL     D +K + S +          AI  +I+ MA  +   +IA+ +  E 
Sbjct: 642 TGYSAMAYLKRFNIDYLKIDQSFVRDLETDPGDRAIAEAIVVMAHRLGLKVIAEGVETEG 701

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               L   GC+Y+Q    A P+   + L  +
Sbjct: 702 QYALLAEAGCEYVQGYLFAKPMPVEAFLAFV 732


>gi|260222537|emb|CBA32198.1| hypothetical protein Csp_D30930 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 731

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 152/581 (26%), Positives = 272/581 (46%), Gaps = 17/581 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +  E  SLAV G+G  +W WD+V D V     +  ILG   G++      WL  IH 
Sbjct: 152 AVRTQQEILSLAVSGAGLGIWHWDLVEDSVEWNARMQQILGYPDGALTPRSATWLNLIHP 211

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
           +D   +   L   +       +   R+R    ++ W++   R    +  G +LR  G+A 
Sbjct: 212 DDVQTWEDSLRQHLRDESNEHRLSVRLRHHSGRWVWILFAGRAADRSVQGRVLRLAGVAM 271

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+  QK   + +   A  D+LT +PNR   ++ +   L     +      V+ +D D++K
Sbjct: 272 DVNAQKALEQQLRTAARTDDLTALPNRTGMVELIRAALARRRVEPGYHFAVLFMDFDRFK 331

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDIL----------ARLSGNRFGIILISENNS 627
           ++ND LG  V D +L  + RR+ + L+  D            AR+ G+ F ++L      
Sbjct: 332 QVNDTLGHTVRDALLRQIARRLEDSLRPGDSFAHSGDFDKVAARIGGDEFVVLLDDIRGD 391

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           L     A  +   +A P  L    +T T SIG  + T ++  +  +L++A++AMY AK  
Sbjct: 392 LDAIHVASRLLYVLAAPYVLDGHRVTSTVSIGIVTSTHTEDDADSVLRDADIAMYEAKRT 451

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F   + S  SD V ++ DL  A++N E+ +VY P++ L   ++ G+EAL++W 
Sbjct: 452 GRARYVLFDPLMRSQVSDSVSLENDLRQALDNREMRVVYQPLLHLPGHQLAGVEALVRWQ 511

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKD 804
           HP  G +S  +F+ +AE   +I A+  F+LE   +     +       P  + +N++   
Sbjct: 512 HPVRGAVSPVDFIPLAEACGVIAALGQFVLETACQTFAQLQRDLGSTAPPSMSVNLSRAQ 571

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +  L   ++  +      P ++ L  +ES+   +    +  L  LR +G++L+LDDFG
Sbjct: 572 LREPGLVGMVRDALRSADMEPRQLVLEVTESLAAQD-ALVQTTLQELRAMGVALSLDDFG 630

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+ L  +P  ++K + S +    +      ++ + + +A  ++   +A+ I    
Sbjct: 631 TGYSSLACLHELPVSSIKIDRSFVNLLDKSEYHRVLIEATLRVAATLKLGTVAEGIETAE 690

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              E+  MGC   Q      P+   +++  ++ R PL K T
Sbjct: 691 QATEMAAMGCQKGQGYWFGRPMEVEALVAWIQARQPLEKIT 731



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 62/159 (38%), Gaps = 6/159 (3%)

Query: 373 GGLVLIVILIGFTVIQ-HVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV 428
           GG+ ++ +++ F +++    A     + +    +R          S + +   D +   V
Sbjct: 2   GGIAVLGLVLSFALVEPTARAVRRQYEALSRQADRLKRMAKVAELSSNAIAITDGMHRVV 61

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                 + +         G     L      D  +F    ++    +   ++ E RV A 
Sbjct: 62  WINEAFSDLTSYTPDQCRGRRIGTLLKARSADPTHFTEFTEALARGQG--IKREVRVIAK 119

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + +  W+++ ++P+ + +G +  ++ +A D+T  +   E
Sbjct: 120 NAELGWVLVDMQPIRDEDGTMSGWVLVATDLTAVRTQQE 158


>gi|220908904|ref|YP_002484215.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 7425]
 gi|219865515|gb|ACL45854.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 744

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 156/537 (29%), Positives = 272/537 (50%), Gaps = 18/537 (3%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                  +LG    ++ G    +L  +   D         + V      L+ E  V    
Sbjct: 186 VNSRGEKLLGKPRQAILGR---FLSELLPVDSSKQLIQKYTLVVETGQVLEEELPVNITP 242

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
               W+  +I P+ +           A DI+E+K+    +   AF D LT +PNR  F++
Sbjct: 243 LPITWLHHQIVPLGD------GIAITARDISERKQKEAELHRQAFYDPLTELPNRTYFMN 296

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RLT +L+ +    +    V  +D+D++K +ND LG  +GD+ L ++ RR+   L+  D++
Sbjct: 297 RLTKVLERAGRRQDFHYAVFFLDLDRFKVVNDSLGHLLGDEFLKAIARRLSSCLREEDMV 356

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F I+L   +N   +   A  +++ ++ P  L + E+  TASIG A  TS    
Sbjct: 357 ARLGGDEFAILLEELSNPDIVHRIAERLQRVLSAPFTLKQHELFTTASIGIALGTSYYEQ 416

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
              +L++A++AMY AK +G      F   + +    R  ++ DL  A+E  E  LVY PI
Sbjct: 417 PEAILRDADIAMYQAKTQGKARHIIFDQAMHTRAVKRWQLESDLRWAIERREFCLVYQPI 476

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + +  E ++G EAL++W HP+ G IS +EF+ +AEE  +I  +  ++L    R +  W+ 
Sbjct: 477 VSIQTERLIGFEALVRWHHPQRGWISPAEFISVAEETGLIIPLGHWVLWEGCRQLRQWQS 536

Query: 788 QAN-----MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           Q N      PP+ + +N++SK     +L   +Q ++ +T    + +KL  +ES++M N  
Sbjct: 537 QFNLSPTAEPPLTVSVNLSSKQFCQPDLIHYIQQVLQQTGMEGTCLKLELTESILMENLS 596

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +  LL +L+++GI L LDDFGT  S LSYL   P D +K + S + G     + + I+R
Sbjct: 597 TATSLLVQLKELGIQLALDDFGTGYSSLSYLHRFPLDVLKIDRSFINGIEAETENLEIVR 656

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +I+ +A+++   ++A+ +  +  +  L  + C Y Q   ++ PL      + L+E  
Sbjct: 657 TILSLARSLNLQVVAEGVETQAQLDHLQALQCGYAQGYLISRPLTPEKTEQFLQEYL 713


>gi|134291097|ref|YP_001114866.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
 gi|134134286|gb|ABO58611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
          Length = 837

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 148/597 (24%), Positives = 262/597 (43%), Gaps = 16/597 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVR 425
             L+G   +++ +      +   A     + +        +A      + + +   D   
Sbjct: 241 TGLLGFADVLLSIEHEYANELRSALRERDEALGLARFNLRMADRVFESALEGIMVTDRHA 300

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                      + G     + G     L       +    F   L   +    G  Q E 
Sbjct: 301 RIERVNQAFTRLTGYTEDEVVGRNPAMLSSGRQTPD----FYKQLWHSLTTD-GHWQGEI 355

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             R    +     + I  + ++ G+I  Y  I +DIT+++++ E +   A  D LT + N
Sbjct: 356 WNRRKSGELFLEYLTITSIRDNAGEISHYAAIFSDITQRRQAEERLGYLATHDVLTNLAN 415

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F +RL   +  +      +  VM +D+D++K +ND LG   GD+VL  +  RI   +
Sbjct: 416 RALFEERLARSIVQAKRLGR-KVAVMYVDLDRFKLVNDTLGHNAGDEVLKVVAGRIAGQV 474

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
              D +AR+ G+ F I+L   ++   +   A  +   +   I +  REI VT SIG + +
Sbjct: 475 LSNDTVARMGGDEFAIVLEEFDDVRDVGRIARNLLDEVGQSIEIEGREIFVTPSIGISIY 534

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELY 721
               I +  +L  A+ AMY AK+RG N  + F      S    ++   +L  A+E +E  
Sbjct: 535 PDDGIDAEHLLLLADQAMYGAKNRGRNVFQFFESKMTSSAIEQLETLGELHRALEQNEFR 594

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P   L    IVG+EAL++W HP+ G ++  EF+ +AE   +I  I  ++L+   R 
Sbjct: 595 LFYQPQYDLASGRIVGVEALLRWLHPRRGLVAPGEFIGLAERSALIVPIGRWVLQEACRQ 654

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W D+       + +N++++    +     +  ++S+T      ++L   ES+ M   
Sbjct: 655 ARRWLDEGFEFG-RVSVNVSARQCFTDHFLSDLTTILSETALPTKCLQLELLESMAMNTR 713

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899
           E   +LL  L   GISL +DDFGT  S L YL  +P DT+K + S +T   +     AI+
Sbjct: 714 EEIGILLRELAIRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDRSFLTDCGTGSTDDAIV 773

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           R+I+ M + +   ++ + +  E  +  L  +GC  +Q   +A P     + + +  R
Sbjct: 774 RAIVAMGRALGLHVVMEGVETEQQLSFLQEIGCHQVQGFLLARPQPAEQLARSVSRR 830


>gi|47569796|ref|ZP_00240467.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241]
 gi|47553538|gb|EAL11918.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241]
          Length = 909

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 171/868 (19%), Positives = 349/868 (40%), Gaps = 30/868 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIIVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
            +           L+E    +D +    +   I I    + A F   +Y++   ++ I +
Sbjct: 107 YLLFLISFAFAF-LYEIIHNRDLLEKLFMICDICI---IVTAQFTLSYYLLIERTIHISS 162

Query: 222 FAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWN 276
            +    +V L Y   D  F    +NL    L +        L S+LI++      Y +  
Sbjct: 163 TSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLPKKVGALLGSALILYATTDAIYAYIK 222

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            +  +    T + +  + ++               +  +           +         
Sbjct: 223 YFIPEYSMFTITPLYQVTLVLVAIACILHTKEPERQEQVLLTPKLGESIRLSLPYISVVM 282

Query: 337 AVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            ++ I    +     +   M       + + +++      L+  +        Q  L T 
Sbjct: 283 LIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELRTE 342

Query: 395 YFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +    ++ + +          D ++  D+  + +       T+LG  +  +      
Sbjct: 343 DLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP-- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    +  D +            +   +  E R    +   +++ +   P+   N  I  
Sbjct: 401 YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKN-HISG 457

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DITE K+  E I   A+ D LT + NR++F   +   +  S     +   VM +
Sbjct: 458 VYLMIKDITESKQQQEQINFLAYHDTLTELANRRAFHQYVEQAIARSEIS-KMPFAVMFL 516

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ +      + 
Sbjct: 517 DLDRFKVINDTLGHRVGDLLLIAVAKRLESIATPNMKLARLAGDEFTILIENYKKRPDVK 576

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +  + + ++ SIG A +  +      +L++A++AMY AK++G N 
Sbjct: 577 KIADTIVAAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNKGKNG 636

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP  
Sbjct: 637 SSLYTKELYKKMERKARIEKDLPLALVNEEFYLVYQPQIDITTKKIIGAEALLRWKHPLL 696

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+I   EF+ I EE   +  +  ++L      +  W        + I +N+++K+   N 
Sbjct: 697 GDIPPCEFIPIVEETPQVIPLGHWVLNESCHQLKIWH-TFGYKDLKISVNLSAKEFQQNN 755

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +  +I+     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S 
Sbjct: 756 LIKNILQIITDVKVDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSS 815

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  +  +K L
Sbjct: 816 LAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETQKQLKFL 875

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
               C Y+Q  + + PL  +  +K L++
Sbjct: 876 QNNNCKYMQGYYFSKPLTSHQFIKFLQK 903


>gi|307149961|ref|YP_003885345.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306980189|gb|ADN12070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 806

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 157/591 (26%), Positives = 284/591 (48%), Gaps = 15/591 (2%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L  G +     +  ++   V         +    +  +L        ++  D   + V  
Sbjct: 222 LALGQLSDGRRLVMSMASDVTERKNTENRLKEQADLLNLVYEA----IFVRDAHSEIVFW 277

Query: 431 TPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                 + G       G +  + L          F   LD  +    G+ + E      D
Sbjct: 278 NQSAQQMYGWTEQEAKGKVTHSLLKTKFP----PFCDNLDEILRA-SGQWEGELTHTRRD 332

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                +  R   + +S G +   + +  DITE+K++   +  NA  D LTG+PNR   ++
Sbjct: 333 GTQIIVDSRQVLVRDSQGQVKGILEVNRDITERKRTERKLYHNALHDALTGLPNRILLME 392

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R+   +  +    N    V+ ID+D++K IND LG  VGD +LV++  R+ E ++  D +
Sbjct: 393 RVEQAIQRAKRRKNYCFAVLFIDLDRFKNINDSLGHIVGDQLLVAIAHRLLECVRASDTV 452

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F I L       +       + + +   + +   E+  TASIG A  +    +
Sbjct: 453 ARLGGDEFIIFLDELGQEKEAFKITERIIEQLKTSLFVDGLEVFTTASIGIAFNSDDNHS 512

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           ++E+L+NA+LAMY AK +G      +   + +       ++ +L LA+E  E  L Y PI
Sbjct: 513 ATEILRNADLAMYRAKEQGKARYAVYNAAMYTEAQTIWELENNLRLALERQEFLLHYQPI 572

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L  + ++G EALI+W HP+ G IS  +F+ IAEE  +I  I  ++L+   R    W+ 
Sbjct: 573 FSLTTQTLMGFEALIRWQHPQQGLISPVDFIPIAEETGLIVPIGEWVLQESCRQFALWQQ 632

Query: 788 QANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           Q      + I +N++ + L    L + +  ++ +T  S + +KL  +E+++M N E + L
Sbjct: 633 QYPHISDLKISVNLSGRQLQTGNLIDLLDKILLQTGLSGNSLKLEITETLLMKNLESASL 692

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIP 904
           LL +L++  I +++DDFGT  S LSYL ++P +T+K + S +T   E  + + I+++II 
Sbjct: 693 LLSKLKERAIQVSIDDFGTGYSSLSYLCHLPVNTLKIDRSFVTHVNEIKENLQIVKAIIG 752

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +A+ +E  ++A+ I  +  +  L  + C+Y Q    + PL   ++  LL++
Sbjct: 753 LARQLEINVVAEGIETQQHLDRLQELECEYGQGYLFSKPLEEKAVESLLEQ 803



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 83/258 (32%), Gaps = 7/258 (2%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
            + K   +  + +  I ++        ++   +     A   L       Y G      A
Sbjct: 3   TYNKAWEVAQAYLIAIGLVILAILLTLLLDPLLKTPLFAFFYLAVFLSTWYGGRPSGLTA 62

Query: 338 VLLIPAWILIFIWFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
            LL     L   + I     +       ++I+       VL++  +   +          
Sbjct: 63  SLL---SYLAINYLIIAPRYVLGFKDIGELIRLGAFILFVLLISSLKKNLTTVERRLEKN 119

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +    ER   A+  +   +         +      + + G +   +   I +W+   
Sbjct: 120 LQTLQQSEERLQTALTNAPFPMIIHAENGQILQINRAWSELSGYSYAEI-PTIADWIQKA 178

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGI 515
           +  + DN R  ++          + EF ++ +  +   W    +     S+G  L  + +
Sbjct: 179 YGRESDNMRDYIEQLYSLDERLDEGEFTIQTSTGEHRVWDFSSLALGQLSDGRRL-VMSM 237

Query: 516 ANDITEQKKSLEGILCNA 533
           A+D+TE+K +   +   A
Sbjct: 238 ASDVTERKNTENRLKEQA 255


>gi|67923273|ref|ZP_00516758.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67854899|gb|EAM50173.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 707

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 134/551 (24%), Positives = 252/551 (45%), Gaps = 28/551 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +  V  S   + + +         P           ++  P        H         
Sbjct: 165 LASVVELSPIPIVEINYEGTITYLNPS---------TNLKFPNLQKRQIKHP-----LLQ 210

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L     Y  G L     +R  D +       I  ++              +IT++K++ 
Sbjct: 211 GLLEKQDYNNGSLV----IREVDIENQSFEQHIHYLAQEQ----LIRSYIFNITQRKQAE 262

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +  +AF D L G+PNR  F   + +++  ++   N    ++ IDID +K IND LG  
Sbjct: 263 NELKHHAFHDGLIGLPNRNFFDQHI-SLISKNSQRYNKLFAILFIDIDNFKNINDTLGHN 321

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +GD +L    +R+   ++  D + R  G+ F ++L    N  + A F+  + ++   P+ 
Sbjct: 322 IGDQILQYFAKRLNSHIRKSDFVCRWGGDEFVVLLGEIQNPDQAAKFSQRLLQTFEHPLQ 381

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   EI +  S+G A +      +  +LKNA+ A+Y  K  G NH + +        ++ 
Sbjct: 382 IEGHEIYLKCSVGIAIYPEDGQETEILLKNADAALYRTKESGRNHYQFYNPQMGVEIAEN 441

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++  L  AV+N E+ L Y P I +   ++ GLEALI+W  P+ G I   +F+ +AE+ 
Sbjct: 442 FTLENQLHQAVKNGEMILHYQPQINIKTGQVYGLEALIRWKSPQLGLIKPGKFIPLAEKT 501

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L+   +    W+ Q  +PP+ I +N++++ L    L E ++  +      
Sbjct: 502 GLILPMGEWVLKTACQQNKKWQ-QMGLPPVIISVNLSAQQLQQPNLIETVENTLESVGLD 560

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  ++L  +ES++M N   ++  L  LR++G+ +++DDFGT  S L YL   PFDT+K +
Sbjct: 561 PKWLELEVTESMLMKNITIAKKTLQELREMGVYISMDDFGTGYSSLGYLKKFPFDTLKID 620

Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    +      I+ +I+ +++     +IA+ +  +  +K L  + C+ +Q    + 
Sbjct: 621 QSFVKELNQSSQDLHIISAIMTLSRGFNLRVIAEGVENQEQLKLLKELNCEEMQGYLFSR 680

Query: 943 PLGFNSILKLL 953
           PL    +LK L
Sbjct: 681 PLSSEDVLKYL 691


>gi|26990037|ref|NP_745462.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24984961|gb|AAN68926.1|AE016524_1 sensory box protein/GGDEF domain protein [Pseudomonas putida
           KT2440]
          Length = 733

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 155/630 (24%), Positives = 279/630 (44%), Gaps = 15/630 (2%)

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           +ER   L   + L   W + L ++    +                V +   T    + A 
Sbjct: 111 WERFRSLALGYNLRSCWSLPL-LSHEGSVLGTFALYQDQAIAPSEVQIHRLTCAAQLAAI 169

Query: 394 GYFS----QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                   Q +    +R       + + V+  D   +  +  P    +   A+  + G  
Sbjct: 170 AIRHERDGQRLEESEQRFRSLFTYNPNPVFALDRAGNIQSVNPAGLKLKAGAATDLVGH- 228

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            ++   +   D         +       R   E RVR   +    ++         NG+I
Sbjct: 229 -HFSHLVFEEDLPKVNQHFFAARAGEPQRF--EARVRDESDDKQLIMDIANLPIMVNGEI 285

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +   GIA DI++QK     +  NA  D LTG+ NR S  DRL      S+    ++  VM
Sbjct: 286 VGVFGIARDISKQKHYERQLSINASHDGLTGLLNRLSLEDRLVQAC-RSSRQRKVQLAVM 344

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +K IND +G   GD VL+ + +R+ + ++  D + R+ G+ F ++L        
Sbjct: 345 YIDLDGFKSINDSIGHYFGDQVLIEVAQRLTQQVRPADTVVRMGGDEFVVLLTDLLRDED 404

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +  SI  P  +   ++ V+ SIG            ++++ A++AMY AK +G 
Sbjct: 405 AVPVAERLLASIGKPYCIQGIDLHVSTSIGITVSDGHIEQPMKLIQQADMAMYKAKQQGR 464

Query: 690 NHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+ + +    +    +   ++ DL  A++     L Y P I      +VG+EAL++W+HP
Sbjct: 465 NNFQWYTSDLNHRVCEHRSLRNDLQKAIKTQSFSLHYQPQIEARTRRVVGIEALLRWEHP 524

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G IS + F+ +AE+   I  ++L++L+     +    DQ     I + +NI+      
Sbjct: 525 VRGFISPAVFIPVAEDSGQIIPLSLWVLDTACAQLRDLCDQGFN-GISMAVNISPMHFQC 583

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E +QA++SK   S  +++L  +ES+++ N E++   L RL+ +G+ + LDDFGT  
Sbjct: 584 GQFVECIQAVLSKHGLSAGQLELEITESLLLHNVEQAIATLHRLKDLGVRIALDDFGTGF 643

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D +K + S +          AI + II MA ++  +++A+ +     + 
Sbjct: 644 SSLSYLKCLPIDKIKIDRSFIQDISTNPHDAAITQGIISMAHHLSLSVVAEGVETAPQVN 703

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  CD +Q  + A P+   ++   L +
Sbjct: 704 FLERGRCDILQGYYFARPMSHEALRTFLAD 733


>gi|253995514|ref|YP_003047578.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982193|gb|ACT47051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 934

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 143/670 (21%), Positives = 280/670 (41%), Gaps = 22/670 (3%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           +            S+A              ++   +    R ++L P      +    + 
Sbjct: 269 VIVAYPLSEARAVSLANAWFVVFAGILLGTLLIVIILWQLRRLILNPIGGDPALAIDVVK 328

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVL 412
                 L  D              ++     ++  L        +  + ER  L      
Sbjct: 329 RIAAGDLAQD------GLNAKPDTLMASVLEMRQKLRESI--DTLRQNAERMRLSASVFD 380

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D ++  D   + V        I G       G I   L ++  +D  +   +L    
Sbjct: 381 HAHDGIFITDPHANIVEVNYAFTQITGYTRNGALGRIPQELGFVTYDD--SLLDVLW-LQ 437

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  + E   R  +   +   + I  + +    +  ++G+ +DIT+ K+  + +   
Sbjct: 438 AESNSEWRGETWCRRKNGDVYAAWLDIFCVRDEANQVKNFVGLFSDITQAKEQQQNLERM 497

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D LT +PNR    DRL   L  +     L   V  +D+D +K +ND LG   GD +L
Sbjct: 498 AYHDPLTQLPNRALLSDRLQQALARAERSGEL-LAVCCLDLDGFKPVNDTLGHEAGDYLL 556

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V L  R+   L+  D +ARL G+ F ++L    +  +       +   I  P ++ ++ +
Sbjct: 557 VQLAVRMSACLRDSDTVARLGGDEFAVLLCGLQSIDECTQTLERLLSVIKTPYSIGDKSV 616

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710
           TV++SIG+  +         +L++A+ AMY AK  GG+ V+ F     R  R     +E 
Sbjct: 617 TVSSSIGYTIFPDDGCEPDTLLRHADHAMYQAKLNGGSRVQQFDSHHDRQFRGLRQDRER 676

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+ N E  L Y P + L   ++VG+EALI+W+HP+ G  S + F+ I E       +
Sbjct: 677 VEAALSNQEFRLYYQPKVDLRQGKVVGMEALIRWEHPELGLRSPATFLPIVENTDFSIPL 736

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIK 829
             +++      I  W+         + +NIA++ ++ +   E +  L+++    +P +I+
Sbjct: 737 GEWVISEALGQIRVWQAAGLD--FQVSVNIAARHIVQSNFTERLVLLLAEFPEVAPHKIE 794

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+  + +       +   +++G+S  LDDFG   S L+YL  +P +T+K + S + 
Sbjct: 795 LEITETAAIEDVSGVANTINTCKQLGVSFALDDFGVGYSSLTYLRRLPVETIKIDQSFVR 854

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                   +A++  +I ++++ +  ++A+ +        L RMGC  +Q   VA P+  +
Sbjct: 855 DMLQDVDDLAVVAGVISLSRDFKRKVVAEGVENSEQGLWLLRMGCSVVQGYGVARPMPAD 914

Query: 948 SILKLLKERF 957
            + + ++   
Sbjct: 915 EVQQWVESYQ 924


>gi|228930357|ref|ZP_04093361.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228829343|gb|EEM74976.1| Sensory box protein [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 677

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 146/562 (25%), Positives = 269/562 (47%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + L +I  
Sbjct: 120 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQHSNKACESLF--TAYYCEVASYSLLHFIDS 177

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D D  +  L      R   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 178 KDHDLLKKALQITKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARD 234

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D++KK
Sbjct: 235 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKK 293

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A  + 
Sbjct: 294 INDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQIL 353

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 354 NILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKE 413

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++
Sbjct: 414 MSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQ 473

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 474 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 532

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 533 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 592

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L    CD+
Sbjct: 593 PINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDH 652

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    + +LL ++
Sbjct: 653 IQGFFISKPVSSKDVWRLLHKK 674


>gi|95928550|ref|ZP_01311297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135340|gb|EAT16992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 791

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 149/756 (19%), Positives = 288/756 (38%), Gaps = 27/756 (3%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
              +   ++     L + ++L      + R    I   + +I          R       
Sbjct: 37  VLSIAILLTALGLGLQQQLHLSENTTSLARFLLVILFCAGVIKIYHSRRSTQRNANHDSR 96

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL---LI 341
                         M  Y        A     S++ Y  + +    +       +    +
Sbjct: 97  PEQFYAFFQHGGAGMYSYDTAGRILNANPAFCSMIGYSEHELKSMTILDVTPPQVRDETL 156

Query: 342 PAWILI---FIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFS 397
                                 +  + +I       +V     +    ++Q +       
Sbjct: 157 NRLARFRDKLNEPCNFEKTYLCKDGSTLIGHFTGKWIVSDNDSIYAVALVQDITEHKNAD 216

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           Q +  + E     + G  D +         +               ++           H
Sbjct: 217 QAVLKEREFLQTVIDGIADPIMAISTDYHVILANRAARE--SHPEHALQPGPTLCYQLSH 274

Query: 458 INDRD----NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            +D      N +  L   +   +   +    +RA   +     I+  P+ N +  I   I
Sbjct: 275 GSDTPCSDTNQKCPLCQVLKTGKEAREIHEHLRAGH-EKRTYEIKASPLYNEDHSIRGII 333

Query: 514 GIANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             + D+T       E  +  + +      D LT +PN++ F DRL      +        
Sbjct: 334 ETSRDLTDILNSEAELNEKTQHLQFVTTHDQLTHLPNKELFFDRLERATFKTHRSP-FFT 392

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ ID+D++K IND LG  +GD +L  + +R+   ++  D LAR+ G+ F II+     
Sbjct: 393 ALLFIDLDRFKHINDSLGHEIGDQLLQEVAKRLSTSIRKTDTLARMGGDEFLIIIEDIKE 452

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              ++  A     +I     +   E+ +T S+G +   +      E+L  AE+AMY AK 
Sbjct: 453 LSHVSTVAKNFIDTILPSFTIDGHELFITPSMGISIAPTDTQHPKELLAFAEIAMYQAKG 512

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GGN  + +   ++S    R+ ++  L  AV   +  L Y P   +   E+VG EAL++W
Sbjct: 513 LGGNKCQFYTAEMNSRAKTRIELESYLRKAVNQDQFVLYYQPQFDIQSGELVGCEALLRW 572

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS ++F+ +AEE  +I  I  ++L+        W+D     PI + +NI+ + 
Sbjct: 573 QHPQMGMISPNDFIPLAEETGVIIEIGEWVLQEACLQNKKWQDA-GHSPIRVAVNISPRQ 631

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             +    E ++ ++  T   P  ++L  +ES++M + + +  +L +L+  GI L +DDFG
Sbjct: 632 FREPGFLEMIERVVQTTGIKPEWLELEITESLLMDDIDSAINILKQLKAKGIHLAIDDFG 691

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P   +K + S +      +   +I +++I +A ++   ++A+ I  + 
Sbjct: 692 TGYSSLSYLKRFPLSRLKIDRSFVRDITTDDNDASITKAVIALAHSMNLKVVAEGIETQE 751

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  L   GC+  Q    + P+          +  P
Sbjct: 752 QLLFLKEKGCEVGQGYLYSPPVAKEPFDHFFTDGSP 787


>gi|89902336|ref|YP_524807.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89347073|gb|ABD71276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 658

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 132/549 (24%), Positives = 253/549 (46%), Gaps = 12/549 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTIL 468
               + + +   D  +  V   P  + I G ++   +           H  D   +  + 
Sbjct: 111 VFDSTREGLMVTDSAQRIVRINPAFSEITGYSAADVLDQTPALLRSGRH--DSAFYAAMW 168

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           DS      G  Q E   R  +++ +  +I I  + +  G +  Y+ +  D+++ + S   
Sbjct: 169 DSI--NVSGHWQGEVWNRRKNSEIYPQLISIDVIRDHTGRVCNYVAVLTDLSKLRSSQLE 226

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR   L RL   ++L+  D      ++++D+D++K IND  G  VG
Sbjct: 227 LDFLAHHDPLTRLPNRLLLLSRLQHGIELAQRD-GTHLALLMLDLDRFKDINDSFGHLVG 285

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  +  R+ + ++  D + R  G+ F +++     + + A  A  + + ++ P  L 
Sbjct: 286 DELLQLVATRLVKQVRTIDTVGRFGGDEFSVLMEDVAGAEQAARVANDIIRVLSEPYGLS 345

Query: 649 -EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705
              E+ + AS+G + +  + +T   ML+ A+ A+Y AK  G      F  S       R+
Sbjct: 346 SGVEVRIGASVGISIYPDNGLTPELMLQQADSALYQAKIEGRGRFAYFSESLTQAARARI 405

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I+  L  A+   EL + Y P + +    IVG EAL++W  P  G +  + F+ IAE   
Sbjct: 406 DIEVRLRRAITQGELRVYYQPQVDIPSGRIVGAEALVRWQCPIEGLVPPARFITIAEATG 465

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I+ ++L    +    WR     P + + +N+++   L  ++ + +  ++  T Y  
Sbjct: 466 LIGEIDDWVLRETCQQGQRWRAAGL-PTLTLAVNLSAYQFLQGDISQTVAQVLRDTGYPA 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + ++L  +ES +M    ++  +L RL+ +G+ L +DDFGT  S L+YL   P D +K + 
Sbjct: 525 AFLELELTESALMQREAQAIQMLDRLKALGVRLAIDDFGTGYSSLAYLKLFPLDVLKIDK 584

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +         + I+ +II MA ++   ++A+ +  +  +  L   GCD  Q    + P
Sbjct: 585 RFIDDIPAHRDDMEIVTAIIAMAHSLRLKVLAEGVENKEQLAYLQTQGCDQFQGYLTSRP 644

Query: 944 LGFNSILKL 952
           +      KL
Sbjct: 645 VPAAEFEKL 653



 Score = 42.2 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 25/117 (21%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L +    D +   D     +        +     G + G   +    IH         
Sbjct: 8   FQLILTTISDGIVVVDQRGVVLYANESAERLF--ERGELVGK--DLAVPIH--------- 54

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                     G  + +  +        W  +R  P++  +      I +  DITE+K
Sbjct: 55  ---------SGETRQDINLIRPSG-IGWAELRSAPITW-DKQPAFVICV-RDITERK 99


>gi|238759090|ref|ZP_04620259.1| Sensory box-containing diguanylate cyclase [Yersinia aldovae ATCC
           35236]
 gi|238702638|gb|EEP95186.1| Sensory box-containing diguanylate cyclase [Yersinia aldovae ATCC
           35236]
          Length = 855

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 143/584 (24%), Positives = 274/584 (46%), Gaps = 20/584 (3%)

Query: 383 GFTVIQHVLATGYFSQ----GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           G+ VI+  +A    +      + +  ER       + D +W+ D        +     I 
Sbjct: 282 GWRVIRRAIAEAQVADDNKTALTASEERFRHVAESATDWLWETDTELRITYLSQRFLIIT 341

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL+     G   +    ++ +       +  + +   R  LQ  +   +A        I 
Sbjct: 342 GLSIEHWMGRNLD--SLLNCDIIPLRSWLQHTHLAESRNELQCTY--FSAKGDRRICRIY 397

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +P+ N++ + + Y G A+DIT + ++ E I   +  D LTG+PNR    + L   L   
Sbjct: 398 AKPIINND-ETIGYRGTASDITSEIEAQERIQHLSMHDALTGLPNRIRMKEFLENKLRNL 456

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +   +    V+ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F 
Sbjct: 457 SVAQH-PLVVLNVDLDKFKPVNDTYGHVTGDTVLHQVSERLRSCLRDQDMVARHGGDEFV 515

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +I+   ++  +I      +   I  P  +  ++I + ASIG A      I + E+L+ A+
Sbjct: 516 LIITGLSSVKEIEQLCARVITRIEAPYVVDAQDIYIGASIGIALAPQDSIQAEELLRFAD 575

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N    +             ++  L  AV+N E  L Y P  R+   ++ 
Sbjct: 576 IAMYEAKSNGRNCWSFYSSEMNERLMQRSELERFLRQAVKNREFSLYYQPRYRIEGIQLT 635

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W+HP  G +   +F+ +AEE  +I +I+ + + +  +D I+W      P + +
Sbjct: 636 GAEALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACKDAITWH-----PSLIV 690

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI++ +     L E ++ ++  T     R++L  +E +++ + + +  ++  L+ +G+
Sbjct: 691 SVNISAVEFRSQHLIERVRQVLRLTGLPSHRLELEITERIMIEDADGAFKIMTALKALGV 750

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ 
Sbjct: 751 RLAMDDFGTGYSSLNYLRRFPFDALKIDKSFIDELAESHEGQSIVEGIINLGHALTMTVT 810

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL-LKERF 957
           A+ +     +  L  + CD +Q   ++ P+  + +  L L ER+
Sbjct: 811 AEGVETAEQLGYLRNLKCDEVQGYFLSKPMQLDDLSALMLNERY 854


>gi|160896650|ref|YP_001562232.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160362234|gb|ABX33847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 692

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 134/585 (22%), Positives = 257/585 (43%), Gaps = 19/585 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I  V    + +Q +    ER       + + +         +     ++ + G    
Sbjct: 119 VVQITDVSHHHHVAQKVRDSEERMRKFTEVTTEAI-VMHRDGLIIDGNEALSRLAGYTLD 177

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     L YI    R      L      R  R      ++  D     + I  + M 
Sbjct: 178 ELTGRPI--LDYICPEFR---LYALQYMRSGREDRFDGA--IQHKDGHRIPVEIEAKTMP 230

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + G+  R + +  DIT ++ + E +   A  D LT +PNR   +  L   L L++    
Sbjct: 231 -AEGEPYRIV-LVRDITLRQLAQERMDFLAQHDQLTQLPNRVRLIQMLRQALSLASVKRR 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V++ID+D +K IND LG   GD +L  + +R+   ++  D++AR+ G+ F ++L  
Sbjct: 289 A-LAVLIIDLDHFKTINDSLGHQAGDLLLCEVAQRLRGSVRAHDLVARVGGDEFVVVLTD 347

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           + +  +    A  +++ I  P  +    + ++  +G A +      + E+L  AE AM+ 
Sbjct: 348 DPDPQETETQASHLQRIIEAPCAIDGTPLVISPCMGIAMYPGDGKNAEELLNRAESAMHM 407

Query: 684 AKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           AK  G  +++ +  +      ++  +M ++ L  A+E  E  L Y P     D  + G E
Sbjct: 408 AKDSGRRNLQFYAPAQDGQATQAQMLMQEQQLRGALERGEFELYYQPQTFTADGRLAGFE 467

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +   EF+  AE   +I AI+ ++L    R    W+D+    P+ + +N
Sbjct: 468 ALVRWRHPQRGLVLPGEFIGFAEARGLISAIDHWVLREACRQARQWQDEGLA-PVPLSVN 526

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++ +    ++   +  ++ +T      + +  +ES +M    + +  L  L+ +G+ L 
Sbjct: 527 LSALEFRQRDMAREVAQVLEETGLEARWLHIELTESTLMHTSGQVQDTLQALQALGVGLA 586

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P + +K + S +     +E   AI+ +I+ M  ++   I+A+ 
Sbjct: 587 IDDFGTGYSSLAYLRRHPINQLKIDRSFIADVPDSEDDTAIVTAIVQMGHSLHLDIVAEG 646

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL-LKERFPLVK 961
           +     +  L  +GC  +Q   VA PL         L    P+ +
Sbjct: 647 VETPAQLALLRELGCGMMQGYLVAPPLPAERARAWQLHNSHPVQR 691


>gi|332530469|ref|ZP_08406410.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
 gi|332040038|gb|EGI76423.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
          Length = 702

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 139/557 (24%), Positives = 266/557 (47%), Gaps = 11/557 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFR 465
                  + + ++        +   P +A + G   + ++   ++N    +++  ++  R
Sbjct: 132 YRHIFEHASEGIFQSTPEGHYLEVNPALARLYGYENAQALITGLQNISRQLYV--KEGQR 189

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +    +  +   L +E  +  AD    W+      + ++ G++L Y G   DI+E+++ 
Sbjct: 190 ELFRQIMAEQGEILNFESEIYRADGSRIWISENAHTVCDAEGNLLYYEGTVQDISERRRY 249

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LTG+PNR    DR+   +  +         V+ ID+D +K IND LG 
Sbjct: 250 QQELEHQANHDTLTGLPNRMLLSDRVEQGIARAERL-GYHLVVVFIDLDHFKFINDSLGH 308

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD++L  +  R+   ++  D +ARL G+ F ++L     S  + D    +   I+ P+
Sbjct: 309 DAGDELLKEVALRLRRCVRASDTVARLGGDEFVLLLADHFRSSTVIDQLQRVLSEISQPV 368

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
            L  RE  V AS+G A +      +  + K+A+ AMY AK  G N+ + F    +   ++
Sbjct: 369 QLSGREFQVGASLGVAMYPGDGEDALSLFKHADAAMYAAKGNGRNNFQFFTRELNHVATE 428

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++  L  A+++    + Y P     +  I+G+EAL +W  P++G IS   F+ IAE+
Sbjct: 429 RLHLEAALRHAIDHDGFEVHYQPKTD-ANRRIIGMEALARWRPPEYGPISPDRFIPIAED 487

Query: 764 LCMIKAINLFMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
             +I  + + +L+R       W         P+ I +N++ +  L +++   +  L+   
Sbjct: 488 SGLILPLTMTILQRAFVATRRWNEGRDLKRNPLRIAVNLSPRLFLSDDIVSHVHRLLRDA 547

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  ++L  +E+V M   ER    L + +++G+ L +DDFGT  S LSYL   P D +
Sbjct: 548 DLSPELVELEITETVFMSRSERVLETLIQFKQLGLQLAMDDFGTGYSALSYLRRFPLDII 607

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL+TG   +     I R+++ + +++  T++A+ +  +     L   GCD  Q   
Sbjct: 608 KIDRSLVTGIEREEEVAMIARAVLSLGQSLHKTVVAEGVENQAQFDFLRSQGCDEFQGYL 667

Query: 940 VASPLGFNSILKLLKER 956
           ++ PL    + +LL+  
Sbjct: 668 LSRPLSEAGMSELLQSH 684



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTI 467
           +A     D  W        V  +     + G     +    + +W    H  DR+  RT 
Sbjct: 12  MAYRCLNDAHWT------MVFVSQGCLALTGYTPQELVHNAVVSWEQITHPLDRERVRTS 65

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           + +       R   ++R+ + D    W+  R   +++  G ++   G   D+T
Sbjct: 66  V-ATTSSTNLRFAVDYRIVSKDGTVKWVHERGVAVADEQGTLV-IEGFIEDVT 116


>gi|172065448|ref|YP_001816160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|171997690|gb|ACB68607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 837

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 146/592 (24%), Positives = 261/592 (44%), Gaps = 26/592 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLA----------VLGSGDIVWDWDIV 424
           +  L+ F  +   +   Y ++    +    E   LA             + + +   D  
Sbjct: 240 LTGLLCFADVLQSIEHEYANELRSALRERDEALGLARFNLRMADRVFESALEGIMVTDRH 299

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYE 482
                       + G     + G     L       +    F   L   +    G  Q E
Sbjct: 300 AKIERVNQAFTRLTGYTEDEVVGRNPGLLSSGRQTPD----FYKQLWHSLTTD-GHWQGE 354

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              R    +     + I  + +S G+I  Y  I +DIT+++++ E +   A  D LT + 
Sbjct: 355 IWNRRKTGELFLEYLTITSIRDSEGEISHYAAIFSDITQRRQAEERLGYLATHDVLTNLA 414

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F +RLT  +  +      +  VM +D+D++K +ND LG   GD+VL  +  RI   
Sbjct: 415 NRMLFEERLTHAIVHAKRLGR-KVAVMYLDLDRFKLVNDTLGHNAGDEVLKMVAERIVAN 473

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D +AR+ G+ F ++L   ++   +   A  +   +   I++++R+I VT SIG + 
Sbjct: 474 VRANDTVARMGGDEFALVLEEVDDVRDVGRVARKLLDEVGRAIDIVDRQIFVTPSIGISI 533

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSEL 720
           +      + +++  A+ AMY AK+RG N  + F      S    ++   +L  A+E +E 
Sbjct: 534 YPDDGTEAEDLILLADQAMYGAKNRGRNVFQFFESKMTSSAIEQLETLGELHRALEQNEF 593

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P   L    IVG+EAL++W HP+ G +   +F+ +AE   +I  I  ++L    R
Sbjct: 594 RLFYQPQYDLASGRIVGVEALLRWLHPRRGLVPPGDFIGLAERSALIVPIGRWVLHEACR 653

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W D+       + +N++++    +     +  ++S+T      ++L   ES+ M  
Sbjct: 654 QARCWLDEGFAFG-RVSVNVSARQCFTDHFLSDLTTILSETALPAEYLQLELLESMAMNT 712

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            E   +LL  L   GISL +DDFGT  S L YL  +P DT+K + S +T   S     AI
Sbjct: 713 REEIGILLRELATRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDQSFLTDCGSGSTDDAI 772

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +R+I+ M + +   ++ + +     +  L  +GC   Q    A P   + ++
Sbjct: 773 VRAIVAMGRALGLDVVMEGVETAKQLAFLQEIGCHQGQGFLFARPQPADRLV 824


>gi|310780005|ref|YP_003968337.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
 gi|309749328|gb|ADO83989.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
          Length = 799

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 144/579 (24%), Positives = 264/579 (45%), Gaps = 14/579 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGL 440
           I    +  +       +  F   E           ++   D+    +           G 
Sbjct: 228 IVIGTLYDITRQKSAEESAFKKEEEYRKIFQNHNAVMLMIDVQTGEIVDANNAAVKFYGW 287

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +       +  +  N+       ++     ++      FR R AD     +     
Sbjct: 288 TRKELTKMKIADINILTENE---IYKEMEMARRNKKNYF--TFRHRLADGSIRDVEAYSG 342

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G   R   I +DIT+++++ + I   AF D+LT +PNR+ F D L   +     
Sbjct: 343 EIIS--GKRPRLFSIIHDITKRREAEKKIKNLAFYDSLTNLPNRRMFSDYLEKSIVQGQR 400

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           +D  +  ++ ID+D +K +ND  G  +GD +L+ +  R+   L+  +I+ RL G+ F +I
Sbjct: 401 ND-FQVALLNIDLDHFKHVNDSFGHHIGDLLLIRVAERLRRNLRKNNIICRLGGDEFAVI 459

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   ++  +I   +  + K +  P  + ++EI ++ASIG A +       + +LKN++LA
Sbjct: 460 IEEFSSRQEINFVSGRILKVLEAPFLIDDKEIFISASIGVAVYPEDGSDVNTLLKNSDLA 519

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK RG N    F      +    ++ D  L  ++ N EL L Y P I +   +I+G 
Sbjct: 520 MYGAKDRGKNGYYFFSEDMKHASNSKMEIDTNLRKSLINGELCLYYQPKIDIAQNKIIGT 579

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W        + SEF+ IAE    I  I+ ++L    R I  W ++ N+    I +
Sbjct: 580 ETLLRWFKNGKIYKAPSEFIPIAESTGFILEIDRWVLLSACRQIEEW-EKNNIKGQKISV 638

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+        + + +  ++ K       I++  +E V M N E +  +L +LR +GI +
Sbjct: 639 NISGLHFKQGLIIKTVTEVLKKVKIPKDSIEIEITEGVFMENMEEAVGILNQLRSMGIGI 698

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LSY+  +P + +K + S +     ++K  AI +++I MAK ++  +IA+
Sbjct: 699 SIDDFGTGYSSLSYIKNLPINRIKIDKSFIFNMIDSKKDTAIAKTVITMAKLLDLYVIAE 758

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     +K L+  GC+ IQ  + + PL      K  K+
Sbjct: 759 GVETSEQLKILSENGCNEIQGFYFSKPLSPEEYEKFFKK 797



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           SG   W++D+  + V ++     I G+   ++        P      R+         + 
Sbjct: 137 SGFGYWEFDLDNNTVKSSKGSRKIYGITEETLMVDNIKEYPL--PEYRERLDKAFKDLIT 194

Query: 474 YRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            R+     EF+++   D +   +        +   +I   IG   DIT QK + E
Sbjct: 195 GRKN-YNVEFKIKNKIDGEIRAIHSVAE--YDPKRNI--VIGTLYDITRQKSAEE 244


>gi|167625007|ref|YP_001675301.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella halifaxensis HAW-EB4]
 gi|167355029|gb|ABZ77642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella halifaxensis HAW-EB4]
          Length = 1017

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 153/559 (27%), Positives = 259/559 (46%), Gaps = 12/559 (2%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +    +  +     S + +   D     +        I G +   +       L     
Sbjct: 450  QVEDSLKLAASVYNNSSEAMSVQDGQGFIININAAFTDITGYSEAEVKQQNIKILQC--- 506

Query: 459  NDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +R+N RT     +     GR + E  +R  + +   + + +  + ++   +L  + + +
Sbjct: 507  -NRNNLRTYEQMNLAVEEHGRWEGEVWLRRKNGEEFVVWLTLNALFDAKDQVLHRVALFS 565

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DITE+K++ + I   A  D LTG+PNR+  LD L+  +  S   +     +M ID+D +K
Sbjct: 566  DITEKKQAEQIIWKQANYDPLTGLPNRRMLLDYLSAEILKSDCREQ-HFAIMFIDLDYFK 624

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ++ND LG  +GD +L    +R+   ++  D++ARL G+ F ++L +  +   + + A  +
Sbjct: 625  EVNDTLGHDMGDMLLSEAAKRLKACIRDTDVVARLGGDEFTVVLPNITDIKGVDNVAKHI 684

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
               IA P NL E    ++ASIG   +     T   +LK+A+ AMY AK  G N    F  
Sbjct: 685  LARIAEPFNLGEETAYISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYFTA 744

Query: 698  SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S  R    R+ + +DL  A+ N+E  L Y PI+ L  E  +  EALI+W HPK G +S  
Sbjct: 745  SMQRYAKHRMRLIQDLRHAIVNNEFELFYQPIVSLQQESKLKAEALIRWRHPKRGLVSPI 804

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGM 814
            EF+ +AEE  +I  I  ++ ++ AR    WRD+  +  + I IN +     D  E  E  
Sbjct: 805  EFITVAEETGLIIEIGNWVFQQAARQSALWRDRFGVE-VQISINKSPVQFRDEGESFESW 863

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             AL+     S + I +  +E +++         L + R+ GI ++LDDFGT  S L+YL 
Sbjct: 864  AALLKTLNLSNNNICIEITEGLLLDGNSAISSKLAQYRQSGIQVSLDDFGTGYSSLAYLK 923

Query: 875  YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
                D +K + S             +  +II MA  +   +IA+ +  +   K L+  GC
Sbjct: 924  KFEIDYLKIDQSFTRNLDSNSDDFTLCEAIIVMAHKLGMKVIAEGVETDYQRKVLSDAGC 983

Query: 933  DYIQDSHVASPLGFNSILK 951
            DY Q    + P+      +
Sbjct: 984  DYGQGYLFSRPVPVEEFEQ 1002



 Score =  108 bits (269), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 2/156 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V L+   +  H L      + + S  E+ SL +  S    WDWDI  D +      A +L
Sbjct: 305 VELVITGLQNHTLQKEAEIEKLASQ-EQLSLVLGSSELGFWDWDIHSDIIERNEHSAKLL 363

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G    +++   + W   IH  DR      +D+ +     + + E+R+    N+  W++  
Sbjct: 364 GCDVETLNREQKRWTNAIHSEDRATVLKSIDAILNGETDQYKLEYRIHNQSNETLWILDL 423

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            + M  + +G  +R  GI  DIT++K+  + +   A
Sbjct: 424 GKVMSRDESGSPIRMCGIHTDITDRKQVEDSLKLAA 459



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/335 (11%), Positives = 99/335 (29%), Gaps = 25/335 (7%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPS-------GELLIWRACSEIALSSSLIIFLFM--- 271
             ++ +    + +    +                 +      + I +S  L+ + +    
Sbjct: 5   LILSLIQNTALLLAIVLVYDAFPRTQKRSLAILWRVGSGFFVAVITISLMLMPWQYSDGI 64

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +L        V  + F GI  +  +     Y   ++     +      +  +  I Y   
Sbjct: 65  FLDSRTVILSVCGLFFGGIPTLVAVVLSCLY--RLSEGGIAVWSGVGTIVTSGLIGYLWG 122

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           K  +  +  I    L+    +   +A+   L         +   + I +LI F     +L
Sbjct: 123 KYRKGDIEDISISELLAFGLMTNSVALLWGLTMPTEMAIDLLKQITIPLLIIFPTTTVLL 182

Query: 392 ATGYFSQGIFSDGERQSLA--------VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +      ++  L                +   +   + +   P+   +L  +  
Sbjct: 183 GLLLSRRIEIEREQKLKLQDHLLFKSHFKAGNMGIAITNKDHEWIKVNPNFCEMLKYSEQ 242

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G   +W   +   D   ++   +  +       + + R+ + D    +  + +    
Sbjct: 243 ELLG--LSWPELMLQQDFHLYKHHFNQMLKGDINEFELDIRLISKDEAIVYTYMTVACQR 300

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           + +  +   I    + T QK++   I   A Q+ L
Sbjct: 301 SQS-KVELVITGLQNHTLQKEA--EIEKLASQEQL 332


>gi|153840412|ref|ZP_01993079.1| MorA [Vibrio parahaemolyticus AQ3810]
 gi|149745925|gb|EDM57055.1| MorA [Vibrio parahaemolyticus AQ3810]
          Length = 591

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 140/552 (25%), Positives = 259/552 (46%), Gaps = 17/552 (3%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + SLA      S + +   D   + +      + I G ++  + G   N L   H +D  
Sbjct: 47  QLSLASKIFNNSQEGMVITDSNANIIDVNNAFSQITGFSAEEVIGKNPNILRSGHHDD-- 104

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F   L   +  + G+ + EF  R  D   +  +  I  + +    ++ YI +  DI+ +
Sbjct: 105 AFYQQLWQQLETK-GQWKGEFINRKRDGSIYPQLATISAVMDDKNHLINYICVFEDISVR 163

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   AF D LT +PNR   +  L   +++           + +DID +K IND 
Sbjct: 164 KAHEEKLQRMAFYDPLTNLPNRTHLISLLEQHIEMEQ-----PFATLFLDIDHFKHINDS 218

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  L  R+ ++L     +AR+ G+ F I+L   +    + +   ++     
Sbjct: 219 MGHFCGDQLLSKLAVRLQDILHLNAHVARIGGDEFVIVLPDIDGDSPLLETLSSILGVFR 278

Query: 643 MPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            P +L   + + ++ SIG A + +    S  +LKNA+ AMY AK  G N    +      
Sbjct: 279 RPFDLANHDSLRISTSIGIALYPNDGQDSETLLKNADTAMYLAKKNGRNGYAFYSPDLTD 338

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V I+  L  A+E  +L+LVY P   L    I+G+EAL++W+HP++G +  ++F+ 
Sbjct: 339 KSVSHVRIQSALHEAIEKEQLHLVYQPQYNLAQNAIIGVEALVRWEHPEFGLVPPADFIP 398

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I+ I  ++L+        W  +       I +N+++  L  +     ++ ++ 
Sbjct: 399 IAEKTGLIQNIGEWVLKDACLQGTDWLARGVQFG-KIAVNVSALQLQQSRFINKLKTILR 457

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +    ++L  +ES ++ +P+ +   L +L ++GI ++LDDFGT  S LSYL  +P +
Sbjct: 458 ETGFPAHHLELEITESFLLIDPKLAIASLNQLCELGIEISLDDFGTGYSSLSYLKGLPIN 517

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   +     AI+ +II M   +   ++A+ I     +  L   GC Y Q 
Sbjct: 518 KLKIDRSFVSDVPNDNDSNAIVNAIIAMGTTLSLKVVAEGIETPEQVAYLVDKGCIYGQG 577

Query: 938 SHVASPLGFNSI 949
              + P+    +
Sbjct: 578 YLFSPPVAAKKL 589



 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           E R    +N   W+     P+ N  GD++  +G+  +IT ++K +E  L  A
Sbjct: 1   ECRQIDENNNPTWLETIKSPVRNQAGDLIGILGMTRNIT-RRKMVETQLSLA 51


>gi|256823698|ref|YP_003147661.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Kangiella koreensis DSM 16069]
 gi|256797237|gb|ACV27893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Kangiella koreensis DSM 16069]
          Length = 1515

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 142/563 (25%), Positives = 271/563 (48%), Gaps = 14/563 (2%)

Query: 399  GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +  ++ S+ V       D VW  D     +        I G     + G +      
Sbjct: 942  ELKNTEQQLSMIVKSFDNISDGVWILDENFHYIAVNKAFTKITGFDESEVLGKLMKVSSL 1001

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              I D D F  + +      +G    E   +  D   + + I I  + +++G+I+ Y+G+
Sbjct: 1002 HQITD-DEFYDLRNELTE--KGFWYGELVAKRKDGDTYPIEINIDVVRDNDGEIINYVGV 1058

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DIT +K++   +   A  D LT + NR SF      +++ S      +  ++ ID+D 
Sbjct: 1059 FSDITFRKQAERELRRLATVDQLTDLKNRTSFRTLFEHLIEDSGR--GDQHALLFIDLDN 1116

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG  +GD++L+ + + + E++     ++ARL G+ F ++L   +   K A  A
Sbjct: 1117 FKRINDSLGHGIGDELLIYVAKILQEIVSDQNGVVARLGGDEFTVLLQEVDTWNKPAKIA 1176

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             A+    A  + L   E+ V+ SIG   +  +  ++ E+LKNA+ AMY+AK +G N  + 
Sbjct: 1177 QAILDEFAKSLPLSTAEVVVSPSIGIVMYPENGTSAEELLKNADTAMYYAKKKGKNTYQF 1236

Query: 695  FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            +        ++   ++ +L  A+E  E  + Y P + L   +I G+EAL++W +P+ G +
Sbjct: 1237 YTRQMNEQAKLRITLESELRQAIEKDEFVMFYQPKVSLQTGKITGMEALVRWRNPRRGLV 1296

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               EF+ +AEE   I  I+  ++E+    I  W+++       + +N+++       L E
Sbjct: 1297 LPGEFIPLAEEAGFIIPISQRVIEKTCLQIRDWQNRGIFHG-KVAVNLSAVQFYHENLWE 1355

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++  +      P  ++   +E +VM +  +S   +  LR++GISL LDDFG   S L  
Sbjct: 1356 TVKNALHLAKIEPDALEFEITEGMVMEDLAQSLQQMRTLREMGISLALDDFGVGYSSLGN 1415

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P DT+K + + +     +++   ++ SI+ +A N++  ++A+ +     +  L  M
Sbjct: 1416 LKDFPIDTLKIDRTFVWDLEDSDRDRNLVASIVTLAHNLDIKVVAEGVENRNQVDALREM 1475

Query: 931  GCDYIQDSHVASPLGFNSILKLL 953
            GC+ IQ    + P+    I  +L
Sbjct: 1476 GCEEIQGFIFSRPVPPWDIETML 1498



 Score =  111 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 5/176 (2%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                  +       + G  LI++   + +   +      +  +    ER  L++ GSGD
Sbjct: 781 TSGWLTPSAFTLYGFILG--LIILAFSYLIWARMRERRMAALQLTQSEERLKLSLWGSGD 838

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +WDW +    +  + +           +          IH ND    R  L++ +  + 
Sbjct: 839 ELWDWQVQSGALHLSNEWP--YDFPRDGIRSGYSMANSNIHPNDLPYVRQSLNAHLADKS 896

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILC 531
              +  +R+      + W++ R + +  + N   LR  G   +ITE K + + +  
Sbjct: 897 MHYESTYRISDEHGGWIWVLDRGKVVSRDENQKPLRMAGTLKNITELKNTEQQLSM 952


>gi|119478224|ref|ZP_01618280.1| hypothetical protein GP2143_06779 [marine gamma proteobacterium
           HTCC2143]
 gi|119448733|gb|EAW29977.1| hypothetical protein GP2143_06779 [marine gamma proteobacterium
           HTCC2143]
          Length = 760

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 176/755 (23%), Positives = 319/755 (42%), Gaps = 23/755 (3%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
             +              + ++   L  +V      L +  A        SL  F     +
Sbjct: 15  DGLFKLYPISISSTYLLVLVNCYALWSVVPTVHIVLWLSVATVVSIYRYSL--FAIRTRN 72

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA-SIARITLASIVLYYTYFIIYHGMKG 333
             R   +   I     + ++ ++       +V   SIA + +  I +          +  
Sbjct: 73  STRLSPERWLIHNDVTSALSGMYWGYGLLYLVPPDSIAHMLIFVIAVTGLVSGASSSLSL 132

Query: 334 YERAVLLIPAWILIFIWFIGLWMAI-TKRLDNDIIQPALVGGLVLIVILIGFTV--IQHV 390
             R+ LL     L+ +  +   M+     L   +    +       + +       I   
Sbjct: 133 SPRSFLLYMISCLMPMSILLYGMSDDYGWLLFGLCYFYIYFMWQTCLTIGENARLGIVQT 192

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           ++     + + + G    L  +GS   + DWD         P  A+I G     +     
Sbjct: 193 VSLRQQKEELIASGRLLDLHFMGSPLGLIDWDEDLKIKRWNPAAASIFGYPESEILNQKP 252

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           ++L       RD F+      +   +  L      R  D           P+ + +G +L
Sbjct: 253 DFL-LTDNAGRDYFK-----ILRQGKQALANTVNSRKRDGGAVSCEWASTPLEDGSGTLL 306

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y     DI+++ +  + I   AF D +T +PNR+ F +RL   +       N    V+ 
Sbjct: 307 GYTSFVTDISKRLEHEQQITHQAFYDAVTDLPNRRYFYERLRQEMSRVQRGPN-HSAVLF 365

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----N 625
           ID+D +K IND LG A+GD++L     R+   L+  ++LARL G+ F ++L         
Sbjct: 366 IDLDHFKNINDSLGHALGDELLKQFAMRLQNRLRQHEVLARLGGDEFVLLLEELDPDLDK 425

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A A++  I  P  L     T+T SIG   +  +    SE+LK A+LA+Y +K
Sbjct: 426 SQAIAGQVAKALQTLIQEPFVLENNPYTLTCSIGITLFDKTDFNESEILKQADLALYRSK 485

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           HRG N    F           +++  ++  A+ + E  LV+ P + +   E+ G E L++
Sbjct: 486 HRGRNCYSFFEQEMSEQALRHLILLNNVREAIGSEEFSLVFQPQVDIHTAELKGAETLLR 545

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIAS 802
           W++ + G +S +EF+ I E   +I  +  ++L+     +  W+       P+ + INI+ 
Sbjct: 546 WNNSELGRVSPAEFIPILESSTLIVEVGHWVLDHSFEQLKEWQLAALWHEPMRLAINISP 605

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + LLD +  E + AL++K   SPS I+   +E+V++ + E+  ++L +   +GIS ++DD
Sbjct: 606 RQLLDPDFIEQVTALLNKHELSPSLIEFEITENVLVQDVEKVGVILDKFASMGISFSIDD 665

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P D +K + S +   T       I+RSI+ +   +  T +A+ +  
Sbjct: 666 FGTGYSSLSYLKQLPIDVLKIDKSFIDHCTSEGNDQVIVRSILSICTELGLTSVAEGVET 725

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           E   K+L  MGCD +Q    + P+  + +  +L  
Sbjct: 726 EEQQKKLQAMGCDLLQGYLYSRPVRADELSIMLSN 760


>gi|330826915|ref|YP_004390218.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329312287|gb|AEB86702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 921

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 137/559 (24%), Positives = 246/559 (44%), Gaps = 10/559 (1%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              R +L    + + +   D         P    I G  +  + G   N L      DR 
Sbjct: 356 SARRAALVYQHTSEAMVVTDAQGVVQDINPAFTAITGYEAADILGRRMNVLSS-GRQDRA 414

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            +  +  S      G    + R R  + +     + I    N +G +  +IG+  D+TE 
Sbjct: 415 FYEALWTSLRE--TGSWSGDMRNRRKNGEEFVERLTISTSYNEDGSVHSHIGLFADVTEA 472

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    I   A  D+LT +PNRQ F   L   +D +    +L   ++ +D+D +K++ND 
Sbjct: 473 RRREASIWRQAHYDHLTQLPNRQMFQQDLQRSMDSA-RASDLPLALVFLDLDYFKEVNDT 531

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD++L  + RR+   ++  D +ARL G+ F +IL               +  ++A
Sbjct: 532 FGHDMGDELLRQVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVA 591

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            P  L    + V+ S G   +         +LK+A+LAMY AK +G N    F   +   
Sbjct: 592 QPYELSGSTVHVSVSAGVTFYPRDGDDGVTLLKHADLAMYAAKEQGRNQFCEFAPTMEQE 651

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R ++  DL   ++  E  L Y PI+ +     V  EAL++W+ P  G +S ++F+ +
Sbjct: 652 AQNRRLLLRDLQQGLDEGEFALHYQPIVEMRSGRTVKAEALLRWNQPVRGMVSPADFIAL 711

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALIS 819
           AEE  +I  +  +++   A  +  WR++   P   + +N++   L  +    +   A + 
Sbjct: 712 AEESGLIVPLGDWVMREAACQLAQWREEIA-PAFRLSVNVSPVQLNSSGHCVQAWVAHLQ 770

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 S +    +E V++   + +   L  L+  GI L LDDFGT  S LSYL     D
Sbjct: 771 DLSLPGSALVAEITERVLLEADKDTDARLQTLQGAGIQLALDDFGTGYSSLSYLKRFDID 830

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++  ++  +   + ++II MA  +   ++A+ +        L R GCDY Q 
Sbjct: 831 YIKIDRSFVSLLSQGNEDATLCQAIIAMAHQLGICVVAEGVETREQHDILQRAGCDYGQG 890

Query: 938 SHVASPLGFNSILKLLKER 956
                P+    + + L+ +
Sbjct: 891 YWYGRPMPAQELTERLRAQ 909



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 14/180 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGS 414
           MA+ +      +  +   G +  V+      I  +L      +   +  +   +     +
Sbjct: 196 MALGRYGTRTRLSTSDELGELARVLDHSAAHIAQLLQDVAQERSALAQMQAMFNGLAENT 255

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              ++  D     +     +A ILG     +       +  +        R         
Sbjct: 256 VAGIYMLDESGRIIYANEQLAQILGYGRAQLSDRFP--MERLFP---PPARAAAHQHSA- 309

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                ++E     AD     + I    M+   G     IG+  DITE+K++       A 
Sbjct: 310 -----RHERSALRADGSKIEIEIFGSAMTF-QGRPA-VIGLVMDITERKRAEMSARRAAL 362


>gi|238794774|ref|ZP_04638377.1| Sensory box-containing diguanylate cyclase [Yersinia intermedia
           ATCC 29909]
 gi|238725928|gb|EEQ17479.1| Sensory box-containing diguanylate cyclase [Yersinia intermedia
           ATCC 29909]
          Length = 855

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 137/585 (23%), Positives = 271/585 (46%), Gaps = 15/585 (2%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L L   L+    +            + +  ER       + D +W+ D        +   
Sbjct: 278 LGLAGWLVLRRAMSEARIADENKSALIASEERFRHVAEAATDWLWETDADLRITYLSQRF 337

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            TI GL+     G   +    ++ +       +  + +   R  LQ  +   +A      
Sbjct: 338 LTITGLSVEHWLGHNLD--SLLNCDIIPLRPWLQHTHLTESRNELQCTY--LSAKGDKRI 393

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             I  +P+   N + + + G A+DIT + ++ E I   +  D LTG+PNR    + L   
Sbjct: 394 CRIYAKPII-KNNETIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENK 452

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L   A   +    ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G
Sbjct: 453 LRHLAAAQH-PLVIINVDLDKFKPVNDTFGHVTGDLVLHQVSERLRSCLRDNDLVARQGG 511

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +I+   ++  +I      +   I  P  + +++I + ASIG A      + + E+L
Sbjct: 512 DEFILIITGLSSRKEIEQLCARVIARIESPYVINDQDIYIGASIGIALAPQDSMQAEELL 571

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK+ G N    +             ++  L  AV+++E  L Y P  R+  
Sbjct: 572 RFADIAMYEAKNSGRNRWSFYSSEMNERLMQRSELERFLRQAVKHNEFNLYYQPRYRIEG 631

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            ++ G EAL++W+HP  G +   +F+ +AEE  +I AI+ + + +  +D  +W       
Sbjct: 632 TQLTGAEALVRWNHPILGLLMPDQFIALAEETGLITAISDWTMLQACQDASTWPSS---- 687

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +NI++ +  +  L E ++ ++  T     R++L  +E +++ + + +   +  L+
Sbjct: 688 -LIVSVNISAVEFRNQRLIERVRQVLRLTGLPSHRLELEITERIMIEDADGAYKTMTALK 746

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            +G+ L++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   + 
Sbjct: 747 TLGVRLSMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAESHEGQSIVEGIINLGHALS 806

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            T+ A+ +     +++L  + CD +Q   +  P+  N +  L++ 
Sbjct: 807 MTVTAEGVETTEQLRQLQTLKCDEVQGYFLGKPMKLNDLSVLIRN 851


>gi|117925739|ref|YP_866356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117609495|gb|ABK44950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 951

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 146/568 (25%), Positives = 266/568 (46%), Gaps = 14/568 (2%)

Query: 398 QGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWL 453
                  ++  LA   V  + + +   +     +   P    I G     + G   +   
Sbjct: 374 HEARETEQQLLLAKQVVQTASEAIVITNHKNQIMDVNPAYERITGFMRHEVLGRNPKITQ 433

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H     +F   +   +    G    E   R  + +     + I  + N  G I  ++
Sbjct: 434 SGRHD---ASFYATMWKHLVGE-GHWSGEIWDRRRNGEIFPKWLAISAIRNRQGVISHFV 489

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+ NDI+ QK + + +    F D LT +PNR  F DRL   + ++   + L  +++++D+
Sbjct: 490 GVFNDISRQKSTEQQLERLVFYDPLTQLPNRVLFRDRLIHEVGVAERSNKL-MSLLLVDL 548

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG  VGD++L+ +++R+   ++  D +ARL G+ F IIL     +   A  
Sbjct: 549 DRFKIINDTLGHGVGDELLLQVSKRLIASVRKSDTVARLGGDEFAIILPGMERAEDAAHV 608

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   + +P ++ E E+ V ASIG A           +  NA+ AM+ AK  G    +
Sbjct: 609 AETIINQLQVPFSIEENELFVGASIGIAVHGQDGDDYDSLTMNADAAMFKAKESGKGTYK 668

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F       +   +  + +L  AV+N EL L Y P +     +IVG+EAL++W HP  G 
Sbjct: 669 FFTPDMNIQNAKRLVMEAELRRAVDNQELMLHYQPKVDAESRQIVGMEALVRWVHPTRGV 728

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   EF+ +AEE  +I  +   +L R    +  W D    P + + +N++ +   +  L 
Sbjct: 729 IPPGEFIPLAEETGLIVPLGELVLTRACAQVKQWWDMGL-PQVQVAVNLSPRQFQEPNLI 787

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  ++ KT +  + ++L  +ES+ M + + +   + +L+ +G+ +++DDFGT  S LS
Sbjct: 788 EKVSEILRKTGFPATGLELEITESIAMHDVDNTIETVKKLKDLGVRISIDDFGTGYSSLS 847

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P   +K + S +      +   +I+ SII MAK +   ++A+ +     ++ L  
Sbjct: 848 YLKKFPLHALKIDQSFVRDLGGDDDGASIISSIISMAKAMALGVVAEGVETAQQMEFLRG 907

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
             C  +Q   ++ PL  +  L LL+ + 
Sbjct: 908 QECQQVQGFFLSKPLPPSDFLALLERQQ 935



 Score = 84.6 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 102/359 (28%), Gaps = 24/359 (6%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           + + +      ++  +   + +F+ +  +            + W+  G +          
Sbjct: 35  EQLWAHAGLHALVEALVGFMGLFVAVV-IKLLHRNQQVNGRLLWLCAGLVLSIPLMALHT 93

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH--AKVGYITFSGIACIAILFCMS 300
                  ++IW       L   +       L   +WH   ++ Y        +       
Sbjct: 94  APGSDENVVIWLYALATLLGGGV---SAGMLLGEQWHSQPRLPYAALLIALGLMGWAMFF 150

Query: 301 ---------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351
                    +      A    +  A   +   + +I   +    RA LL+  + L+    
Sbjct: 151 PEHIPDMGQWSQLSDLAVGMNLIGALGFVLAWFALISGHVVSGRRAPLLLGNFSLLMASA 210

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
             +++              L    + +++   F +             +  +  R    V
Sbjct: 211 AIIFLLADTWDSRWWFYHFLRLAALALLLSYFFALYLKDFRV------LRENDARFQALV 264

Query: 412 LGSGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
                 V+     + R  V  +  +  + GL+         +    +   D  + +  L+
Sbjct: 265 ESIHAGVYRTQVTLERRLVYASAQMHQVAGLSMQQCQEGGVSLKSLVVPEDWPHVQEALE 324

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             +       + ++R+        W+  R R + +  G    + G   +I E +++ + 
Sbjct: 325 WSIKT-HVPYEMQYRINHPQRGEMWVSDRGRIIKDHQGQPCWFDGALLNIHEARETEQQ 382


>gi|119487258|ref|ZP_01621009.1| hypothetical protein L8106_21077 [Lyngbya sp. PCC 8106]
 gi|119455813|gb|EAW36948.1| hypothetical protein L8106_21077 [Lyngbya sp. PCC 8106]
          Length = 1177

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 146/561 (26%), Positives = 270/561 (48%), Gaps = 8/561 (1%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                   +       + + ++  ++     +  P +A ILG +S  +    +  +  ++ 
Sbjct: 614  ERKQAEAKYRNIFKNAVEGIFQMNLEGLYTSANPALANILGYSSPQVLLNKKTKVKNLY- 672

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIAN 517
              R    +     +  +     +E +V   D +  W++   R + +S G  ++ Y G   
Sbjct: 673  -FRSEQYSKFIQTLNKQGKVSNFESQVYRQDGRLIWILQNARAIRSSKGKQVIYYEGSII 731

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DIT  KK+ E +  +A  D LT + NR  F++RL   +       N    V+ +D+D +K
Sbjct: 732  DITNLKKTEEKLRYSASHDALTNLWNRSFFIERLKKSITRLHKQSNYLFAVLFLDLDGFK 791

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             IND LG  +GD +L+ +++R+   L   +IL RL G+ F I+L + ++  +  + A  +
Sbjct: 792  IINDCLGHGMGDLLLIEISKRLKISLHSGNILCRLGGDEFTILLENISDINEAQEIASRV 851

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
             K +  P  L   ++ +  SIG    T       E+L++A+ AMY AK +G      F  
Sbjct: 852  LKILNKPFTLKGHQVFIGTSIGIVKGTREYHLPPEILRDADTAMYRAKKKGKGCAVLFDA 911

Query: 697  -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             + +    R+ I+ DL  A+E  E  L Y PII L   +I G EAL++W+HP+ G IS  
Sbjct: 912  GMRTDALRRLQIQTDLRFALEQEEFQLYYQPIIELSTGKIAGFEALLRWEHPQQGFISPG 971

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I  +  ++L    R + +W+++ ++   + + +N++S+     +L + +
Sbjct: 972  EFIPVAEETGIIVPLGEWVLREACRQLHTWKEKFSLSKLLMMSVNLSSQQFT-VDLSQRV 1030

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              ++ +T      +KL  +E+ +M +P+ +   L  L++  I + +DDFGT    L YL 
Sbjct: 1031 DQILQETHVLGRELKLEITETAIMADPQLAIATLNELKQREIMICIDDFGTGYCSLGYLH 1090

Query: 875  YIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              P D +K + S +       +  I+R I+ +A+++    IA+ I  E    +L  + C 
Sbjct: 1091 QFPVDILKIDRSFVNKMQVGDKREIVRVIVELAESLRMDAIAEGIETEEQYIQLQNLHCK 1150

Query: 934  YIQDSHVASPLGFNSILKLLK 954
            Y Q  + A PL  N   + L 
Sbjct: 1151 YGQGYYFAKPLHPNEAEQWLA 1171



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 3/168 (1%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           I+      G+VLI+  +   +   ++        +  + +        +   +   D   
Sbjct: 290 ILIGLGTTGIVLILRPLTDQMQTEIIERQKAEIALRHEKDFNQTLFHANPAFLIVLDPEG 349

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                   +   LG     + G       ++  +++D    + +  + +R+  ++ E +V
Sbjct: 350 KVKLMNDTMLNALGYTLEEVVGT-DYLATFVPRHNKDALPWVFELMI-HRQLPIRTEEKV 407

Query: 486 RAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCN 532
              + +   +    R + N    +   ++G   DITE+K++ E +   
Sbjct: 408 LMKNGKKIIVEWYGRAVFNPETDEYEYFLGAGLDITERKRTEEELQLL 455


>gi|239906034|ref|YP_002952773.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239795898|dbj|BAH74887.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 601

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 134/542 (24%), Positives = 254/542 (46%), Gaps = 12/542 (2%)

Query: 422 DIVRDRVTTTPDIATIL-GLASGSMHGPIRNW--LPYIHINDRDNFRTILDSFVGYRRGR 478
           D              +L  L   +  G       +  +        R  L + +  R  R
Sbjct: 53  DGDGRIRFANASCLELLRDLDPSAAVGSPFADSCVKLLPETVSAAVREGLAAVLDGRLPR 112

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            + +           W  +   P+    G     +    DI+ QK+  E IL +AF D L
Sbjct: 113 YEMDLPC-GPSGSQIWRALCFTPLR---GPTSGAVATLTDISRQKQLEEHILHDAFHDTL 168

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F++RL   +     + +    V+ +D+D++K +N   G   GD +L+ +  R
Sbjct: 169 TGLFNRALFINRLDQAIKRLRRNPDALYAVLYLDMDRFKLVNKTFGHVTGDRLLMVIANR 228

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LAR  G+ F I++   +   + +  A  + + +A P  L ++EI VT S+
Sbjct: 229 LQKQLRELDTLARFGGDEFAILIEDISGLDEASTMAENVLRQLAQPFRLKKQEIFVTCSL 288

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVE 716
           G    +++     ++L++A+ AMY +K  GG+H   F        +  ++ +  L  A+E
Sbjct: 289 GVVVGSAAYEHPDQVLRDADNAMYSSKEHGGDHYTVFDAGMRVLTQRRMEMELALRQAME 348

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + E+ + Y PI+ L   ++ GLEAL +W HP+ G I  SEF+ IAEE  +I  +   +L 
Sbjct: 349 SGEITVHYQPIVSLATGDVTGLEALARWQHPRQGFIPPSEFIPIAEESGLINELGALILR 408

Query: 777 RIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +  R ++    +      + + +NI+ +     +  + +  ++++T    SR+KL  +ES
Sbjct: 409 QSCRRLVELGRENPEGEKLSVSVNISGRQFKRPDFVQEVAGILAETGIDASRVKLELTES 468

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           V+M + + +   +  L+ +G+ + +DDFGT  S LSY+   PFD++K + S +    E  
Sbjct: 469 VLMDDADEAVRAIKNLKALGVKVVIDDFGTGYSSLSYIQRFPFDSLKVDRSFVGNMNEAE 528

Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               I+R+II MA  +   ++A+ +        L+ + C+  Q    +  +    + +L+
Sbjct: 529 QNMEIVRAIIAMAHKLGLEVVAEGVELAEHKAALSELRCESAQGFFFSRAVPGEELGELM 588

Query: 954 KE 955
           + 
Sbjct: 589 RR 590


>gi|260220904|emb|CBA28937.1| Uncharacterized signaling protein PA1727 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 786

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 133/574 (23%), Positives = 251/574 (43%), Gaps = 15/574 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                Q +    +   +A     S D+++  D     +        + G       G   
Sbjct: 203 LQQREQELVQSRDALRIAATAFESNDVMFVCDADWRILQVNSAFQRVTGYLPEEAIGKAP 262

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L    I  ++ F  +++  +    G  Q E   R  + + +     I  + + +GD+ 
Sbjct: 263 RDLMGSGIQTQE-FYEVMNESIR-SNGSWQGEVWDRRKNGETYPAWTTITAVRSESGDVT 320

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y+   +D + +K +   I    + D+LT +PNR+  + RL T +  +A        ++ 
Sbjct: 321 HYVANLSDFSARKAAENEIKTLVYFDSLTMLPNRRMLMGRLETAM-HAALSTGHLGALLF 379

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----- 625
           +D+D +K +ND LG   GD +L  +  R+   ++  D +ARL G+ F ++L   +     
Sbjct: 380 VDLDDFKTLNDTLGHHQGDILLQQVANRLQSCVREADTVARLGGDEFVVMLEGLSKDVAE 439

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            S +    A  + +++  P +L     + T S+G   +   + +  E LK A+LAMY AK
Sbjct: 440 ASTQAEAVAGKVMQALNQPYDLGTLTRSSTPSVGITVFGKQQESLDEPLKRADLAMYQAK 499

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F   +  +  +   ++  L  A+E  +  L   P I   D  + G EALI+
Sbjct: 500 AAGRNTSRLFDPKTQAAVTLRADLEAALRTALEEEQFVLYLQPQIS-EDVRVTGAEALIR 558

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +   EF+ +AE+  MI  I  ++L    + +  W  Q     + I +N+++K
Sbjct: 559 WQHPTRGLVMPGEFIAVAEDCGMIVPIGNWVLNTACKQLALWATQPAFAHMTIAVNVSAK 618

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               ++  E +   +S+     S +K+  +ES+++ N +   + +  L+  G+   +DDF
Sbjct: 619 QFHQHDFVEQVLDALSRHGAQASGLKIEITESMLIANVDDVIVRMEELQHHGVGFAMDDF 678

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL  +P D +K + S +          AI   I+ +A ++  ++IA+ +   
Sbjct: 679 GTGYSSLTYLKRLPLDVLKIDQSFVRDVLVDTNDAAIANMIVALANSMGLSVIAEGVETV 738

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ L R GC   Q    + P+        L +
Sbjct: 739 EQMQYLARHGCHAYQGYLFSRPVPVERFETSLAD 772


>gi|27376066|ref|NP_767595.1| hypothetical protein bll0955 [Bradyrhizobium japonicum USDA 110]
 gi|27349205|dbj|BAC46220.1| bll0955 [Bradyrhizobium japonicum USDA 110]
          Length = 955

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 135/589 (22%), Positives = 254/589 (43%), Gaps = 29/589 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               + +       + +     R   A+      +   D     +        + GL+  
Sbjct: 383 VATYEDITERERAIEELSEQYRRFDAALNNMSQGLCMLDSSLRVIVCNRRYIEMYGLSPD 442

Query: 444 SMHG--PIRNWLPY-----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            +     +R  + +     IH +       +   +V   R       R   +D +   + 
Sbjct: 443 VVKPGISMREIMDHSCELGIHPD--TTGAKLYADYVERLREGEHTLHR-HLSDGRIIKLN 499

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            +         ++  ++    D+TE+ K+   +   A  D+LT +PNR  F +++   L+
Sbjct: 500 HKRM-------ELGGWVVTYEDVTERHKAQARVAHMARHDSLTDLPNRTLFREKMGEGLN 552

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A        V+  D+D +K +ND LG A GD +L  +  R+ E +   D +ARL G+ 
Sbjct: 553 QVAIAGGA-MAVLCFDLDNFKTVNDRLGHAAGDRLLRWVAARLKENVGEHDTVARLGGDE 611

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++             A  + + I  P  L  + I V  S+G A      + + E++K 
Sbjct: 612 FAVLQRGPQ-PQSAEKLARRLVEIIGHPPPLESQSIHVGVSVGIAIAPDHGLDADELMKC 670

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LA+Y AK RG    + F          R  ++ +L  A+E  E +LV+ P +RL   E
Sbjct: 671 ADLALYQAKARGRGAYQLFEPEMEEEARSRHALEHNLRGALEAREFHLVFQPQVRLESSE 730

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EAL++W HP  G +S +EF+ IAEE  +I  I  ++L        SW      P +
Sbjct: 731 LTGFEALLRWKHPSRGFVSPAEFIPIAEENGLIVPIGEWVLRTACATAASW------PDV 784

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++        L   + + +++    P R++L  +E+ ++ + E +  +L +LR +
Sbjct: 785 TVAVNLSPVQFRARGLAAMVTSALAEAGLPPQRLELEVTETALLDDSEATIEILHQLRAL 844

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETT 912
           G+ ++LDDFG   S LSYL   PFD +K + S +   G + + +AI+R+I  +   +   
Sbjct: 845 GVRVSLDDFGVGYSSLSYLRKFPFDRIKIDRSFVGTLGESPESVAIVRTIASLGSVLGVE 904

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             A+ +  E  +  +   GC  +Q  +   P     + + ++    + +
Sbjct: 905 TTAEGVETEEQLDFVRECGCTAVQGYYFGRPCPAAEVARTIETLNAVRR 953



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 49/181 (27%), Gaps = 20/181 (11%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
             T  +    ++P   GG + I   +                 +    ER   A+     
Sbjct: 109 LATGLVMALELKPLPGGGWMTICDDVS--------RLARLEAELRVQTERSQHALANMSH 160

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-----FRTILDSF 471
            +  +D     V        +  L    +   + +     H   R N          D+ 
Sbjct: 161 GLIMYDADSRVVVCNERFLKLYNLDPEVVKPGVTHSAAIEHWLSRGNTPGMSADEFHDTR 220

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +   R R      V   D +      +       +G    ++ +  D+TE+ K  E +  
Sbjct: 221 LEDVRSRKAKTLLVMRYDGRMV----QAVSRFLPDG---GWVTVHEDVTERLKYEETLRQ 273

Query: 532 N 532
            
Sbjct: 274 Q 274


>gi|297539309|ref|YP_003675078.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258656|gb|ADI30501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 879

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 143/560 (25%), Positives = 256/560 (45%), Gaps = 15/560 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +  ++A      ++   D   + +        I G  +    G     L      D D 
Sbjct: 324 LQIAAVAFESQNSVMI-TDASLNILRVNKAFTDIFGYTAEEAVGKTAKLLRS-GSQDADF 381

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           +  I         G  Q E   R  + Q    ++ I  + + +G +  Y+G   DITE+K
Sbjct: 382 YEHIWHEV--NTTGSWQGEILNRHKNGQLLSNLLSISVVKSKDGVVTHYVGSHVDITERK 439

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + IL  AF D LT +PNRQ F DRL   +  SA    +   +++ID+D +K +ND L
Sbjct: 440 AAADKILHIAFHDLLTQLPNRQLFNDRLKQAIASSARTSQI-GALLLIDLDNFKTLNDTL 498

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMR 638
           G  +GD +L  +  R+   ++  D +ARL G+ F I+L   ++     +         + 
Sbjct: 499 GHDIGDLLLQQVAERLNLNVREGDTVARLGGDEFVILLEDLSDNALDAATSAEVLGDKIL 558

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  P  L       T+SIG   +   ++  +++LK A+++MY AK  G N +  F   
Sbjct: 559 VALNQPYVLGSNHYHTTSSIGVTMFEGHQLMIADLLKQADISMYQAKKAGRNTLRFFDPK 618

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +  +   ++ +L  A+E+ +  L Y   +        G E LI+W HP+ G IS  +
Sbjct: 619 MQEAFNIRATLEIELRRALESKQFQLYYQVQVD-QLARPFGAEVLIRWIHPERGMISPLD 677

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  I  ++L+     +  W+ + +   + + +N+++K     +    +QA
Sbjct: 678 FIPLAEETGLILPIGEWVLDTACAQLEVWQKEKSTKNLTLSVNVSAKQFSQADFVRQVQA 737

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +S+    P  +KL  +ES+++ + +   + +  L  IG+  +LDDFGT  S L YL  +
Sbjct: 738 KLSRYNVKPQHLKLELTESILLEHVDNIVISMVALESIGVQFSLDDFGTGYSSLQYLKML 797

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + S +          +I+ +II MAKN+   +IA+ +  E   + L   GC +
Sbjct: 798 PLNQLKIDQSFVRDIVEDSNDRSIVGTIIAMAKNLGFEVIAEGVETEAQKELLLSKGCQH 857

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q      P+       LLK
Sbjct: 858 FQGYLFGKPMPIEQFGSLLK 877



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/414 (11%), Positives = 129/414 (31%), Gaps = 43/414 (10%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           + NR  +L+        +L     D              L   +    +  S+    F  
Sbjct: 3   LRNRYILLVTISYFVLALLWIFLSDQLLSIFTDINSIVWLSTAKGVFFVFASALGFFFAL 62

Query: 271 MYLHWNRWHAKVG------------YITFSGIACIAILFCMSFYYPMVTASIARITLASI 318
             +  +   + +               +       AI+  +   +  +   +       +
Sbjct: 63  RAMPLSNDASNLRLQDVVFSGVLFERRSAWLTYVFAIIVTLLMLFVRMHMGLNADHRPLM 122

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
           +L+    ++   + G    +L      +   + +   +   +  D   +          +
Sbjct: 123 ILFMLPILLSALLGGLGPGLLATFLASIGTDYLVIQPLHSFEISDKYDLIQWSTLIFSGL 182

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++ I   ++  + A    +  +       ++AV G+ D V+  D +   +      A   
Sbjct: 183 ILSIFSEMLMRMRARAENNLKL------LNVAVSGTADAVFVKDKIGRYLIVNQAAANFA 236

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+    + G    +L             + D  V   R    +E  V +   +     + 
Sbjct: 237 GMPMAEILGKDDYFLF---PESSAKAVMLQDQKVMDSRRTQSHEESVVSFGGKSMVFDVT 293

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             PM ++ G+++   GI+ DITE+K++   +   A            +F  + + ++  +
Sbjct: 294 KGPMFDAAGNVIGLFGISRDITERKQAEINLQIAA-----------VAFESQNSVMITDA 342

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
           + +        ++ ++  K   D+ G    ++ +    + +    +  D    +
Sbjct: 343 SLN--------ILRVN--KAFTDIFGYTA-EEAVGKTAKLLRSGSQDADFYEHI 385


>gi|222098820|ref|YP_002532878.1| hypothetical protein BCQ_5189 [Bacillus cereus Q1]
 gi|221242879|gb|ACM15589.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 892

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 182/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEDKVEEGASALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L      R  
Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQLTKEGRPQ 411

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L  E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 412 TL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG  VGD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 528 RLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       + ++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 588 IGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++++G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|323490114|ref|ZP_08095334.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
 gi|323396162|gb|EGA88988.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
          Length = 605

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 151/575 (26%), Positives = 262/575 (45%), Gaps = 20/575 (3%)

Query: 391 LATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           L      Q   +  E   +       + D V   D     +       TI G       G
Sbjct: 33  LRNSQKLQKKSNSTELELKFESVFESTSDAVIVADQHGTILQWNLGAETIFGFKKKEAIG 92

Query: 448 PIRNWLPYIHINDR-DNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMS 503
                L  I      D  R  L  F       +   + E   R  D Q   + + +    
Sbjct: 93  VN---LEIIIPESLIDGHRKGLQQFSETGVPSVIGRRVELVGRRKDGQEIPIEMSVGTWK 149

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  L +  I  DITE+K++   I    ++D LTG+PNR+   D+L   +    +   
Sbjct: 150 TEDG--LFFSNIIRDITERKETEAKINSLVYRDPLTGLPNRRMLSDQLALKIKQ-QSGKK 206

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              +++ ID+D +K IND  G   GD +L+ + +R   +    D ++RL  + F ++L +
Sbjct: 207 QSMSLLYIDLDHFKLINDTYGHYAGDQMLIEVAKRFQSIAHAEDTISRLGADEFILLLPN 266

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +S K    A  + +    P    + ++ VT SIG + + +  I    ++KNA++A+  
Sbjct: 267 -TDSFKATAHAQKILELFKEPFRFQQEDLFVTPSIGISIFPNDGIDLDTLVKNADIALSQ 325

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N+ + F  S+ ++      +  D+   +E  E ++ Y P I L   +IVGLEAL
Sbjct: 326 AKSQGKNNFQFFTESTNQAALRKSKLAIDIRKGLEKGEFFIHYQPQIDLKTNKIVGLEAL 385

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ GNIS +EF+ +AE+   I  I  F+L +      +W+D    P   + +NI+
Sbjct: 386 VRWVHPRLGNISPAEFIPVAEDTGSIIQIGEFVLRQACLQNKAWQDAGL-PHFRVAVNIS 444

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S       L E +   +S++   P  ++L  +ES ++ +   +   +  L+ +GI L++D
Sbjct: 445 SHQFSRCNLMETIHTALSESGLHPKYLELELTES-IIQSSTSAIETMQTLKAMGIHLSID 503

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL   P DT+K +   +       K  A++ +II MA+N++  +IA+ + 
Sbjct: 504 DFGTGFSSLRYLKLFPVDTLKIDQYFIRNIITDPKDAALVDTIIKMAENLQLNVIAEGVE 563

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               ++ L +  CD  Q  +   PL    I +L +
Sbjct: 564 TLEQLQFLQQKNCDQAQGYYFNRPLPPEEIERLYQ 598


>gi|319784490|ref|YP_004143966.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170378|gb|ADV13916.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 713

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 133/591 (22%), Positives = 253/591 (42%), Gaps = 30/591 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++ + +       + +     R   A+      +  +D     +        +  +   
Sbjct: 140 VSIYEDITEQRRAQEDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYKVTPA 199

Query: 444 S--MHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
              +    R+ L  +         D D+     ++ +     ++   +R    D     +
Sbjct: 200 DFPLGTTHRDALERLLELGIYTKIDVDSEVAKTEACLA--AAKMHSAYRHLT-DG--RTV 254

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           ++  RPM         ++   +D+TE++++ E +   A  D LTG+PNR  F +RL   L
Sbjct: 255 LVTRRPMDGG-----GWVVTFDDVTERRRTEERMTHLAHHDTLTGLPNRSMFRERLDLAL 309

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSG 614
           + +A        +  +D+D++K +ND  G   GD +L ++  R+   L    D++AR  G
Sbjct: 310 EDTAATP---LAIFSLDLDRFKAVNDTWGHPAGDWLLKTVAERLQRCLHNENDVVARFGG 366

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F II  +          A  + ++I  P     RE+ +  S+G A +      +  +L
Sbjct: 367 DEFVIIQFNFKGIANAEKLAKRIVETIGKPFRDKSREMHIGISLGIAVFPDDGGDADTLL 426

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +NA+ A+Y AK  G N    F        +    ++ DL  A+   E  L + PI+ +  
Sbjct: 427 RNADTALYRAKSEGRNLYRFFEPGMDAMVQARRALEVDLGTALSRQEFDLDFQPIMNIAS 486

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            EIVG EAL++W  P+ G ++   F+ +AEE  +I  +  + L +       W       
Sbjct: 487 GEIVGAEALMRWHSPERGMVAPDSFIPVAEETGLIVPLGEWALRKACTAAARWPA----- 541

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N+++  L        + + ++ +     R++L  +E+V+M   E     L +LR
Sbjct: 542 GLRVAVNVSAVQLKSGSFARSVISALAFSGVPAGRLELEITETVLMDESEVVLRTLRQLR 601

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911
           ++GI + LDDFGT  S L YL   P D +K + S +         AI+R++I +   +  
Sbjct: 602 ELGIRIALDDFGTGYSSLGYLRRFPVDKIKIDRSFIHDLGNRDTAAIVRTVIGLGAELGI 661

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           T+ A+ +  E+ +  L   GC   Q   + +P     I +LL+ R P  + 
Sbjct: 662 TVTAEGVETEVQLDILRSNGCTEAQGFLIGAPSQAAEIQRLLRSRAPHSQT 712



 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            + +    +    +R S AV      +  +D     +    +   I  L +  +   IR 
Sbjct: 22  RSRHMEDELREQNQRFSAAVENMSHGLCMFDADERMIICNGNYLNIFCLDARVIRPGIRF 81

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFHWMIIRIRPMSNSNG 507
                H  D        D     R+  +       +    +D +   +  R  P++    
Sbjct: 82  LDILRHSVDIGVASQTADELYAIRKPYIDQAKPSTYEETLSDGRIVSISHR--PLA---- 135

Query: 508 DILRYIGIANDITEQKKSLEGILCN 532
            +  ++ I  DITEQ+++ E +   
Sbjct: 136 -LGGWVSIYEDITEQRRAQEDLKEQ 159


>gi|113474516|ref|YP_720577.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Trichodesmium erythraeum IMS101]
 gi|110165564|gb|ABG50104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Trichodesmium erythraeum IMS101]
          Length = 866

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 162/633 (25%), Positives = 276/633 (43%), Gaps = 50/633 (7%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           Q   + G + +   I         A       +    ER    V  S + +   + +   
Sbjct: 234 QQNQMVGSIGVNRDITQQKRAQEFALQQAEAALKESEERYHRLVKNSPEAIAV-NYMEKI 292

Query: 428 VTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V      A + G      + G +     +I     +  +  L             E ++ 
Sbjct: 293 VYINAAGAKLFGANCPDEIIGQL--LRKFIPSELIETEKQRLQQVQEQGMETHLQEEKLI 350

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +   + I   P    +G     I I  DIT +KK+   ++ +A  D LTG+PNR  
Sbjct: 351 KLNGEIIDVEILGIP-YTYDGKAATQI-ILKDITHRKKTQAKLVYDALHDTLTGLPNRAL 408

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F +RL   L  S    N +  V+ +D+D++K IND LG  +GD +L+++++R+   +K  
Sbjct: 409 FFERLKLALCRSRKQPNYQFNVLFLDLDRFKVINDSLGHTIGDRLLIAISKRLQNCIKAS 468

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS---- 662
           D LARL G+ F I+L S +N       A  + + +  PI L   EI  TASIG  +    
Sbjct: 469 DTLARLGGDEFTILLESPSNLQDATKVAGRIHQELVRPIYLEGNEIFTTASIGIVTNRRN 528

Query: 663 WTSSKIT-----------SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKE 709
           +                   ++L++A++AMY AK  G    E F   +       + ++ 
Sbjct: 529 FIEDIDENHPLICPIYNKPEDLLRDADIAMYRAKTLGKARHEVFDLTMHREAISLLQLEN 588

Query: 710 DLCLAVE-------NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           DL  A+E       NS+  L Y PII L    I G E+L++W HP  G I   +F+ +AE
Sbjct: 589 DLRRAIEIIKQNPVNSQFILNYQPIICLNTGIITGFESLLRWAHPTRGLIYPGQFIPLAE 648

Query: 763 ELCMIKAINLFMLERIARDIISWRD----------------QANMPPIFILINIASKDLL 806
           E  +I  + +++L  +   + +W+                 Q       + +N++SK L 
Sbjct: 649 ETGLIVPLGMWILRSVCHQLTTWQQECSTKYDSGCCMYSSCQFPTDNFTVSVNLSSKHLS 708

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              L E +  ++ +T   PS ++L  +E+++M N   +  +L +L+   I L +DDFGT 
Sbjct: 709 QPNLLEEINTILEETNCQPSYLELEITETLIMENVSLATQILNKLKNKNIKLLIDDFGTG 768

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEI 922
            S LSYL   P D++K + S ++            I+ +II +A N+   IIA+ I    
Sbjct: 769 YSSLSYLHQFPIDSIKIDRSFVSRLDSDTSGQTCKIVGAIIGLANNLGLEIIAEGIETRT 828

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++L ++ C+  Q    + PL      KLL+ 
Sbjct: 829 QMQKLKKLQCNKGQGYLFSKPLEGEDATKLLRN 861



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           G T I  VL+       I    ++++L      D V   D   + V        + G + 
Sbjct: 115 GETAILSVLSPSLEDTLIQRSLQKKALIFEYLYDGVILTDTQGNIVDWNSAATRMFGYSK 174

Query: 443 GSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G        +H           +   +     +   E      D         + P
Sbjct: 175 TEVLGKSPA---ILHKPEIASVLTKEIIERIKV-NDKWIGEINFIRKDGSEGICETTVVP 230

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           + +    ++  IG+  DIT+QK++ E  L  A
Sbjct: 231 ILDQQNQMVGSIGVNRDITQQKRAQEFALQQA 262


>gi|330988031|gb|EGH86134.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 638

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 153/623 (24%), Positives = 287/623 (46%), Gaps = 17/623 (2%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      + L   I +       Q       VL+  ++ F     ++ ++   
Sbjct: 14  LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              Q   +D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + ++ +  S +    G+   E   R    + +     IR +   +G   
Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G  
Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  AVE  +L + Y P+  L+   I G+EAL++W HP+
Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +   + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   GC   Q    A P+   +I
Sbjct: 608 LLGNGCQLGQGYWFARPMVAQAI 630


>gi|297585135|ref|YP_003700915.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297143592|gb|ADI00350.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 134/561 (23%), Positives = 268/561 (47%), Gaps = 13/561 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R       + D V   +   +   + P    + G     +      +  +I   
Sbjct: 261 LIESEQRYKSIFQYNVDAVTTLNTAGELYYSNPAAEQLFGCDRSELIKEP--FSSFIIAE 318

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R+ F   +   +       Q+E  +     +  ++ + + P    N ++     IA DI
Sbjct: 319 EREPFHEKMTMTLEG--TPHQHETAITNTRGEKRYVHLTLIPTF-INKEVTGVHCIAKDI 375

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE K+S E I   A+ D LT +PN+  F   L T++  S+       ++  ID+D++K I
Sbjct: 376 TESKQSEEKISFLAYHDTLTTLPNQYKFQQDLNTLIARSSIKPK-PFSIFTIDLDRFKFI 434

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +G+++L  +  RI ELL     L R  G+ F  I+  +    +       +  
Sbjct: 435 NDYLGYDLGNELLTKVGTRISELLSEDAKLYRYGGDEF-TIIHLDATPEESLQLGNKIAS 493

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I+M  ++   +  +T SIG +         + ++K ++ AMY AK  G N+V+ F    
Sbjct: 494 AISMAFDISGFDAFITVSIGISHHPDHGKDLNTLIKKSDNAMYFAKKMGRNNVQMFNEEI 553

Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               +  + ++  L  A+E  E  L Y P        I G+EALI+WD+ + G IS ++F
Sbjct: 554 NTLSTKNLKLESLLYKALERDEFLLHYQPQYDAKTNRISGVEALIRWDNEELGMISPADF 613

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  +++        +W+D+   PP+ + +N++ +     +L + +  +
Sbjct: 614 IPLAEETGLIVPIGEWVMRTACHQNKAWQDEGL-PPMVMSVNLSIRQFYQPDLPQVIGKI 672

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + ++  +P  ++L  +ES+ M + + +  +L +L+++G+ + +DDFGT  S L++L   P
Sbjct: 673 LEESGMAPELLELEITESMAM-HADSAISILKQLKQLGVRIAIDDFGTGFSSLNHLKKFP 731

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +       +   I+++II +A N+   ++A+ +  ++  + L    CD  
Sbjct: 732 LDHLKIDRSFVDDICLGSEEQDIVKTIIMLAHNLNLRVVAEGVENDLQQQFLKDHRCDVF 791

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  H + P+  ++I +LL+++
Sbjct: 792 QGFHFSKPVIRDAIPELLRKQ 812



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 10/145 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            IL     +    +     +    + E   L    + D+++  D + +     P  +  L
Sbjct: 119 FILSVVRDLSGRSSNQMLHERTSKEFESLYL---HNPDLIFSTDPLGNFTNMNPACSATL 175

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             +   +   P    L   H    +         +  +        R      +   + I
Sbjct: 176 EYSKQELMKLPYDEILDVAH---INKTVDQFSKALKGQTVTFTATVR--TKSGRPVDLNI 230

Query: 498 RIRPMSNSNGDILRYIGIANDITEQ 522
              P+   +  +   I IA DIT Q
Sbjct: 231 TSLPILVED-QVEGVISIARDITAQ 254


>gi|187927101|ref|YP_001893446.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665431|ref|YP_002983790.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187728855|gb|ACD30019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867458|gb|ACS65118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 980

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 143/571 (25%), Positives = 261/571 (45%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +  + +        +  S D +  +D    R+   P      G +     G   + LP  
Sbjct: 411 TAELVTRERESRTLIENSPDTISRYDRESRRIYANPAFCASAGCSLTEALGKRPSELPG- 469

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D       + S V       Q+E R    D Q     +R+ P ++  G++L  + + 
Sbjct: 470 --GDNARVYEKIISDVISSGTSAQFELRWAGKDGQEQCSHVRLTPETDLAGNVLSVLAVG 527

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D++++      I   A  D LTG+PNRQ F +RL             R  +M+ID+D++
Sbjct: 528 RDLSDRMAFEATIWKQANFDALTGLPNRQMFHERLAQEASQPGRIGR-RMALMLIDLDRF 586

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND LG   GD +L+   +RIG  ++  D +ARL G+ F +IL + +++  +   A  
Sbjct: 587 KEVNDSLGHDRGDTLLIEAGKRIGACVRQSDTVARLGGDEFTVILPNLDDAESVERIAST 646

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +A P  L   E  V+AS+G   +         + KNA+ AMY AK+ G N    F+
Sbjct: 647 IIDKLAEPFKLGTDEAFVSASVGVTFYPDDAHDLDVLFKNADQAMYAAKNAGRNRFSYFK 706

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    R+ +  DL +A+ + +  + Y PI+ L   E+   EALI+W HP+ G IS 
Sbjct: 707 PDMQVEAEKRLRLTSDLRVALPSGQFQVYYQPIVELATGEVCKAEALIRWLHPERGTISP 766

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEG 813
            +F+ +AE+  +I +I  ++ ++  +    WRDQ + P   I +N++   +  +  LC  
Sbjct: 767 HDFISVAEDTGLIVSIGDWVFKQAVQQARQWRDQFH-PSFQISVNMSPVQMRQDGQLCAR 825

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
               +++       + +  +E +++    R+   L  LR  GI +++DDFGT  S LSYL
Sbjct: 826 WSDFLAREGLPVQSVMVEITEGLLLQAESRTDETLLALRSAGIGISIDDFGTGYSSLSYL 885

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K + S +      E   A+  +++ +A  +   +IA+ +        L  + 
Sbjct: 886 QRFDIDYLKIDRSFVHNLSFDEDNQALCEAMVVLAHKLGLKVIAEGVETAEQRDFLKAVD 945

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           CD+ Q    ++P+  +   + +   +P+ + 
Sbjct: 946 CDFAQGFLYSTPVLPHEFERRV---WPMSER 973


>gi|320107294|ref|YP_004182884.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Terriglobus
           saanensis SP1PR4]
 gi|319925815|gb|ADV82890.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 702

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 140/578 (24%), Positives = 256/578 (44%), Gaps = 8/578 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             +   H          +  +  R  + +   GD V   D++            + G   
Sbjct: 120 SLSRALHRAIESSAVDLLSVEKNRALVTLDSIGDAVLSSDLLGRVTYLNGAAEKMTGWTR 179

Query: 443 GSMHGPIRN-WLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIR 500
               G   +     +    R+     L   +   R   L     +   D     +     
Sbjct: 180 LEALGQPLSEVFRILDSVTREIAPDPLQRAIDLNRAVGLPSGCVLLHRDGTERVIDDTAA 239

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +S G ++  + + +D++E + +   +  +A  D LT +PNR    DR++  + +S  
Sbjct: 240 PIHDSVGTVIGAVIVFHDMSEARATAILMASSANHDPLTKLPNRILLSDRISQAISISHR 299

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  VM +D+D +K +ND LG A+GD +L ++  R+   L+  D ++R  G+ F I+
Sbjct: 300 KHRP-FAVMFLDLDYFKAVNDSLGHAIGDKLLQAVADRLLAGLRNSDTVSRQGGDEFVIL 358

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L    N+   A  A  +  SI  P N+ E  I ++ S G + +      +  +L NA++A
Sbjct: 359 LPEIENAADAASSAKKLLLSIGAPYNIDEHCIQISGSFGISLYPDHGDDAETVLNNADIA 418

Query: 681 MYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N +  F+       ++R  ++  L  A+E +E  L Y P + L   +I G 
Sbjct: 419 MYEAKETGRNAIRFFKPEMGLKATERQSLEVGLRRALEQNEFCLYYQPKVSLALGQITGA 478

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W  P  G +  + F+  AE   +I  I  +++    R    W+    +P I I +
Sbjct: 479 EALIRWQDPMLGLLLPAYFVTAAESSGLIVRIGRWVMREACRQASLWQ-TRGLPSIKIAV 537

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++ +  D    EG++ ++ +T   P  ++L  +E V+M + + +  +L  LR++G+ L
Sbjct: 538 NVSAVEFQDRHFVEGVKNILRETGLEPGCLQLELTEGVLMKDADSTASVLRELRQMGVQL 597

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFG   S LSYL   P D +K + S +       +   ++ +II + +N+   ++A+
Sbjct: 598 AIDDFGAGYSSLSYLRQFPIDILKIDQSFVNQIGGGARDGILISAIIGIGRNLNYIVVAE 657

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            I        L    CD  Q    + PL  +   +LL+
Sbjct: 658 GIETIEQKVYLQGQRCDEGQGYLFSHPLVAHEFERLLQ 695


>gi|71909346|ref|YP_286933.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848967|gb|AAZ48463.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 582

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 146/583 (25%), Positives = 274/583 (46%), Gaps = 14/583 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T +    A    ++G          A   S D +   D     V        + G AS 
Sbjct: 1   MTDLVAATARQPATEGEVLSRAALLRAYEQSQDAILVTDRDNLIVAANGAFCQLSGYASD 60

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     L     N        + + +  +    + E   +  + + +   ++I  + 
Sbjct: 61  ELLGKDPRVLAS--DNSTAEHYASIWNALATK-DFWEGEIWDKNKNGERYNRWLKIAVLR 117

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G I  ++   +++   K+  + +   A+ D LT +PNR +F  +L   L     D+ 
Sbjct: 118 DAEGQIENHVANFSEMEASKEYADRLAYLAYHDPLTNLPNRLAFESQLAQALRGCERDNR 177

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  +M+ID+D +K IND LG  VGD++L  +  R+ E ++  D++AR+ G+ F I+L  
Sbjct: 178 -QLALMLIDLDNFKNINDTLGHHVGDELLQKVALRLRESVRSSDLVARIGGDEFVIVLPE 236

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             + L  A  A  +++++A    + +  +  T SIG + +      ++ +L+NA+ AMYH
Sbjct: 237 IESPLTAARVANKVQQNMADSYRIADHALYATPSIGISLFPIDGSDANTLLRNADTAMYH 296

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE-----NSELYLVYHPIIRLMDEEIV 736
           AK  G N+ + +  R++    +R+ ++ +L  A+      +SE  L + P ++    ++ 
Sbjct: 297 AKDAGRNNHQFYTARMNEAAGERLHMENELRQAISAISPGDSEFSLHFQPQVQTATGQVF 356

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           GLEAL++W++P +G +S   F+ IAEE  +I+ +  +++    R I     Q  +  I I
Sbjct: 357 GLEALLRWNNPIFGQVSPMRFIAIAEETGLIQPLGDWVIWETCRLIRQM-KQHGIEDIRI 415

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            INI+++ L    L   ++  +S     P  I+L  +ES  M NPE +  +L +L  +GI
Sbjct: 416 AINISAQQLRHENLLLLVRGALSCYDLRPEDIELEITESTAMQNPETTLSILDQLAAMGI 475

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L+YL ++P   +K + S +          AI  + I +  ++   ++
Sbjct: 476 VLAIDDFGTGYSSLAYLKHLPIQRLKLDRSFVKDIEIDANDAAICTATIALGHSLGLELV 535

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +  E     L  +GCD +Q    + P+ F   +  LK   
Sbjct: 536 AEGVETEAQRAFLASLGCDTLQGYLYSKPMPFEETIAYLKAHQ 578


>gi|146307747|ref|YP_001188212.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145575948|gb|ABP85480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 717

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 145/586 (24%), Positives = 269/586 (45%), Gaps = 20/586 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442
           F VI+ +      +  + +  E+ + A   S D +   +      +        + G +S
Sbjct: 137 FGVIRDITQQQVRADALRASEEKFAKAFHSSPDAITITERDTARYIEVNEGFTRLTGYSS 196

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G     L       +R     ++   +      L  E   +  +     + + ++P
Sbjct: 197 AEVIGRTAFELNIWAFPEER----AVMLDHLAKNGQVLHMEMHGQHRNGDVRLVEVSVQP 252

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + + NG     +  A DI+E K++   +   A+ D LT +PNR   ++RLT  + L    
Sbjct: 253 L-DLNGS-SCLLLTARDISELKQAQAQVQHLAYHDALTNLPNRAMLINRLTQQIALLKRH 310

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           D +R  ++ ID+D +K IND LG  VGD VL  +T R+   ++  D +ARL G+ F ++L
Sbjct: 311 D-MRSALLFIDLDHFKHINDSLGHPVGDAVLRLVTARLEATVRLEDTVARLGGDEFVVLL 369

Query: 622 ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                       ++   A  +R  +A P+ L    + VT SIG A       T +++LK 
Sbjct: 370 CGLQGKRSEVTRQVRQVAEKLRHLLAEPMLLDGHHLQVTPSIGIALIPDHGETPADLLKR 429

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G N ++ FR +   +   R+ ++ DL LA+   E  L + P +   D +
Sbjct: 430 ADIALYRAKDSGRNAIQLFRSTMQDAVSARLRLENDLRLALARGEFELHFQPQVDARDGQ 489

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MP 792
           +VG EAL++W HP+ G  S ++F+ + EE  +I  +  ++L                   
Sbjct: 490 VVGAEALLRWQHPQHGPQSPAQFIQVLEESGLIIEVGGWVLTEACHLCARLLADKLIDAE 549

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ +    ++  E +   +  +    + +KL  +E +V+ N + +   + RL+
Sbjct: 550 RFSLCVNISPRQFRQHDFVERVAGCLRTSQLPHAMLKLEITEGIVIQNIDDTVGKMLRLK 609

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           K G+S  +DDFGT  S L+YL  +P D +K + S +    S      I+R+I+ MA+++ 
Sbjct: 610 KHGVSFAMDDFGTGYSSLTYLKRLPVDMLKIDQSFVRDATSDPNDAGIIRAIVAMARSLG 669

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +IA+ +  +  +  L    C   Q    + P+  ++   LL + 
Sbjct: 670 LGLIAEGVEQQEQLDFLQAQDCHLYQGYLFSKPVPEDAFRALLGQH 715



 Score = 97.7 bits (242), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 10/151 (6%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           +  + D  R   A+ G+    W WDI   +V+ +     + GL           ++  I 
Sbjct: 23  EQTWRDAPRLLAALNGARLGAWYWDIDSGQVSWSRGAQALFGLDPERPLSSSVEYIELIP 82

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +R       ++ +           R+R  D   HW+ I       ++G   R  G+  
Sbjct: 83  DEERGAVLRQFNAILAGNDEGRALRHRIRWPDGSLHWLEISGSLQREADGR-RRMFGVIR 141

Query: 518 DITEQK------KSLEGILCNAFQ---DNLT 539
           DIT+Q+      ++ E     AF    D +T
Sbjct: 142 DITQQQVRADALRASEEKFAKAFHSSPDAIT 172


>gi|17548601|ref|NP_521941.1| hypothetical protein RS00808 [Ralstonia solanacearum GMI1000]
 gi|17430849|emb|CAD17531.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 578

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 148/567 (26%), Positives = 259/567 (45%), Gaps = 23/567 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHINDRDNFRTI 467
            V    + +   D  R      P  A +LG+   ++ G          I   D       
Sbjct: 1   MVNALTEGLLVCDGQRRITYANPSAARLLGVPLDALVGMRLPEVVASAIDEFDTPIREVD 60

Query: 468 L--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513
                 +   + +L   F +R  D +  W+     P+    G+ +              +
Sbjct: 61  WPDGEVLAQGQPQLNQIFGMRCLDGRTVWVSTNWTPLYAEAGEPMTAAPAARHAQPYAVL 120

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D+
Sbjct: 121 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-RSRVSVMFLDL 179

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG   GD +L  +  R+    +  D +ARL G+ F ++L S  +       
Sbjct: 180 DRFKNVNDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESL-DGTGTRRV 238

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P ++  +E+ +  SIG A         + +L+ A+ AMY AK RG N+ +
Sbjct: 239 AERILAAIGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 298

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W+   +G 
Sbjct: 299 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSTDFGR 358

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L 
Sbjct: 359 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++ +      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S LS
Sbjct: 418 GMVRGALTSSGLPGEAVELEMTEGILIRDDPSLHTLLTELRALGVSLALDDFGTGYSSLS 477

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L+ 
Sbjct: 478 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLSE 537

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCD  Q   +  PL   ++  L++E 
Sbjct: 538 IGCDEYQGYLLTRPLEPAAMHDLVREH 564


>gi|74317209|ref|YP_314949.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056704|gb|AAZ97144.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 836

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 133/555 (23%), Positives = 252/555 (45%), Gaps = 8/555 (1%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +    +  + D V   +              +LGL +          +   H     +  
Sbjct: 269 QLLEILEATTDFVAIIEGDGRLRYLNRAGRAVLGLTATEDVSSRH--IAQCHPEWATHRL 326

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +       R G  Q E   R AD +   +   +     +N     +  IA DITE+K  
Sbjct: 327 LMEAFPTARRDGAWQGEIAARLADGREIPVSQVVLAHGGANEMPEFFSTIARDITERKHF 386

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LTG+PNR    D++  ++  SA    L  +V+ +DID +K+IN+ LG 
Sbjct: 387 EQELRRQATHDALTGLPNRILLEDQIEAVVAHSARSHKL-ASVLFLDIDNFKRINESLGH 445

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD +L    +R+ + ++  D++AR  G+ F I+L   ++   I      +R +   P+
Sbjct: 446 AAGDAMLRHAAQRLRDCVRPTDVVARYGGDEFTIVLGDLSHVDNIPAILHKVRAAFETPL 505

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR- 704
            +  +E+  + S+G + +       + +LKNA+ AMY +K  G N  + +        + 
Sbjct: 506 VISGQEVYASFSVGVSVYPHDGDDGATLLKNADTAMYRSKASGRNRYQFYAPEMNARGQE 565

Query: 705 -VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + ++ DL  A++  E  L Y P + L D  I G+EAL++W HP+ G I+  +F+ + E+
Sbjct: 566 LLSLETDLRRALDRGEFRLHYQPQLDLRDNRIAGVEALLRWKHPRDGVIAPGDFVPLLED 625

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  ++L        + R+   + P+ I +N++++   ++ L   ++ ++ +   
Sbjct: 626 TGLIVPVGEWVLRNACTQYRACRES-GVAPVRISVNVSARQFREDTLLRQVEQVLREECM 684

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  ++L  +ES  M +   +  +L  L  +G+ L +DDFGT  S L+YL   P D +K 
Sbjct: 685 PPHHLELEITESTAMQDVAATGDILAALDALGVRLAIDDFGTGYSSLAYLKRFPLDALKI 744

Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + +  +       AI  + I +   +   ++A+ +     +  L R  CD IQ  H +
Sbjct: 745 DQAFIRDAPRDANIAAIAEASISLGHKLGLEVVAEGVETAEQLAFLRRRACDLIQGFHFS 804

Query: 942 SPLGFNSILKLLKER 956
            PL  +++   L   
Sbjct: 805 RPLPADALTPFLARH 819



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 8/136 (5%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R S AV  + D V+  D         P    + G ++    G     +     +D   F 
Sbjct: 147 RLSQAVEQAADSVFITDRQGTIQYVNPSFERLTGYSAAEAIGRTPALIKSDRHDD-AFFH 205

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + D+ +  R    Q     R  D    +    I P+ +    I  ++    D+T++ + 
Sbjct: 206 KLWDTILAGRI--FQETLVNRRKDGGLFYEEKTIAPLFDEGRGIAGFVSTGRDVTDRIRD 263

Query: 526 LEGILCN-----AFQD 536
            +          A  D
Sbjct: 264 EQTRGQLLEILEATTD 279


>gi|118480382|ref|YP_897533.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118419607|gb|ABK88026.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 910

 Score =  522 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 72  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 131

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 132 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 191

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 192 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 251

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 252 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 311

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 312 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 371

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L   +     
Sbjct: 372 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 427

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 428 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 486

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG  +GD +L+ + +
Sbjct: 487 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 545

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 546 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 605

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 606 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 665

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 666 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 725

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 726 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 784

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 785 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 844

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 845 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 904

Query: 954 KER 956
            ++
Sbjct: 905 HKK 907


>gi|27380975|ref|NP_772504.1| hypothetical protein bll5864 [Bradyrhizobium japonicum USDA 110]
 gi|27354141|dbj|BAC51129.1| bll5864 [Bradyrhizobium japonicum USDA 110]
          Length = 799

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 167/799 (20%), Positives = 313/799 (39%), Gaps = 40/799 (5%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV------- 243
           +R + +G A  L        +  R+        ++W+ L  +    G  +          
Sbjct: 14  WRLVALGGAVCLLASAAAISLFQRARAASGGARVSWIALDAVVAGCGIWATHFIAMQAYG 73

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYITFSGIACIAI-LFCMSF 301
               G   I      +  + ++        +   R           G    A+    M  
Sbjct: 74  PGAGGAYNIPVTVLSLIFAIAVTFVGLSISVSATRTIPVALGGAVVGGGVAAMHYTGMMA 133

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYER-------AVLLIPAWILIFIWFIGL 354
                    A  T+A  ++    F     +    R          ++    ++   F  +
Sbjct: 134 LEIPARIGWATDTVAVSIVLGIVFGSLALVVAGRRDGVANALGATVLLTVAIVSHHFTAM 193

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE--RQSL--- 409
                    + +I    +    L V+     V    +A         + GE  RQ +   
Sbjct: 194 GAVELTPDPSIVISGLSIPPASLSVLTASAAVAIIAIALAAAVLDRRAKGELGRQQVVLD 253

Query: 410 -AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            A+      +  +D     +      A +L     ++ G +   +        +  +   
Sbjct: 254 TALENMSQGLCMFDADGKIMLFNERYAAMLRRTDIALTGRLLVDVLR-----EEQAKGQW 308

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                    RL  + R     +Q    + R   + N       ++    DITE  ++   
Sbjct: 309 QGDADEFFARLVIDAREGRTTSQVVNRLGRSIRVVNQPMQGGGWVATFEDITEWLEAQAK 368

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR  F ++L   L    T    +  V+ +D+D +K IND LG  +G
Sbjct: 369 ISHMARHDALTGLPNRVLFHEQLEQGLRR--TGSGDQLAVLCLDLDHFKDINDSLGHPIG 426

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  + RR+   +   D +ARL G+ F ++ I  +        A  + + I+ P  + 
Sbjct: 427 DALLKEVGRRLKATVGESDTVARLGGDEFAVVQIGRSEEAAARCLAGRLVEVISAPYEID 486

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
           + +I +  SIG +        + E+LKNA+LA+Y AK  G      F   + +    R +
Sbjct: 487 DHQIVIGVSIGISLSPQDGSNADELLKNADLALYRAKADGRGTYRFFETGMDARAQARRL 546

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ DL  A++  E    Y PI  +    +V  EAL++W+HP+ G I+   F+ +AEE  +
Sbjct: 547 LEMDLRAALQRDEFQPYYQPIRDVASGRVVVFEALLRWNHPQRGLIAPINFIPLAEETGL 606

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  F+L     D  +W D      + + +N++     +  L   + A ++ +     
Sbjct: 607 IVQLGEFVLRSACTDAATWPD-----DVDVAVNLSPVQFRNPNLIASVTAALTVSGLPAR 661

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ESV++ N E +   L  LR +G+ ++LDDFGT  S LSYL   PFD +K + S
Sbjct: 662 RLELEITESVLLQNSEATLTTLHELRAMGVRISLDDFGTGYSSLSYLRSFPFDKIKIDRS 721

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            ++     E  +AI+R++  + +++     A+ +  +  ++ L R GC   Q    + P 
Sbjct: 722 FVSELATREDSMAIIRAVTGLGRSLGIVTTAEGVENDAQLELLRREGCTQAQGYLFSKPR 781

Query: 945 GFNSILKLLKERFPLVKNT 963
             + +  +L+   P ++ +
Sbjct: 782 PASDVALMLER--PRLRAS 798


>gi|77359305|ref|YP_338880.1| hypothetical protein PSHAa0338 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874216|emb|CAI85437.1| conserved protein of unknown function; putative signaling protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 842

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 156/564 (27%), Positives = 274/564 (48%), Gaps = 15/564 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP- 454
            +        LA   +  S D +         +   P    + G     + G   + L  
Sbjct: 273 ALQHSQRNLYLANKIIDSSLDGIMITHSNSTIMQVNPAFTQLTGYKEHEVIGKCPSILSS 332

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D+  +  + D+    + G  Q E   R  +   +   + I  +   N     Y  
Sbjct: 333 GRH--DKSFYIKMWDAI--NKTGVWQGEICNRKKNGDIYIEWLTIIEIKEPNNSDAIYAA 388

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +DITE+K + + I+  A+ D LTG+PNR+ F DRL   L  +  D +L   VM ID+D
Sbjct: 389 IFSDITERKNAEDKIVQLAYFDELTGLPNRRLFNDRLKMALAAAHRDQHL-LAVMFIDLD 447

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K++ND LG + GD +L  +  RI   L   D LARL G+ F  +L   N    +A  A
Sbjct: 448 RFKEVNDSLGHSAGDCLLTLVAARIEATLNEGDTLARLGGDEFV-VLCEINKIDAVASLA 506

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P  L   E+ VTASIG A +    + S  +LK+A++AMY +K  G N  + 
Sbjct: 507 DKILNNLNSPFQLDHVEVGVTASIGAAVYPDDGLDSETLLKHADIAMYRSKDVGRNSFQL 566

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F+ S      +R+ +      A++N+E  L + P   L  E+I+G+EAL++W  P  G I
Sbjct: 567 FKPSMNARSLERLAMMSRFQHALDNNEFELYFQPKQCLKSEQIMGVEALLRWHDPDLGMI 626

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEEL +I  ++L+++ +  + +  W+ +  +    + INI++  L   +L  
Sbjct: 627 SPAQFIPLAEELGLIVRLDLWVINQAGKVLTLWQKEGLVAG-RLAINISACHLSQGKLAN 685

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++       S +++  +ES  + +  +++  L +L+K+G+ + LDDFGT  S LSY
Sbjct: 686 NIGTMLKHYNLPGSLLEIELTESSFISSFTQAKTQLQQLKKLGVHIALDDFGTGYSALSY 745

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +PFDT+K + S +    ++     I+ ++I +A N+   ++A+ +        L  +
Sbjct: 746 LTKLPFDTLKIDASFIAKIPDEYGNSQIVAALIALASNLNLMVVAEGVEQPAQKNYLISL 805

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           GC+ IQ  +   PL         +
Sbjct: 806 GCNVIQGYYYCRPLTQRQWFDFYR 829


>gi|329905370|ref|ZP_08274109.1| hypothetical protein IMCC9480_2501 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547618|gb|EGF32413.1| hypothetical protein IMCC9480_2501 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 822

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 159/718 (22%), Positives = 291/718 (40%), Gaps = 29/718 (4%)

Query: 265 LIIFLFMYLHWNRWHAKVGYIT--FSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
           L+  L  +L   R   ++   +              +    P    ++A     +++   
Sbjct: 111 LLARLEAFLRLRRHSEELQRDSDLRYRSTFDLAPVGIVHTTPDGDITLANPRFGAMLRLS 170

Query: 323 TYFIIYH----GMKGYERAVLLIPAWILIFIWFIGLW---MAITKRLDNDIIQPALVGGL 375
              +        + G +R  +      L+           +   ++  + +     +  +
Sbjct: 171 GPALPGRKITDMVAGEDRDQMQAAIAALLAGSQTETASFDLRFARQDGSLLWTSVTLSLV 230

Query: 376 --VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
               I       +I+ +       Q +          +    + +   D     +     
Sbjct: 231 RGTGIAPRHLLALIEDISLRKEMEQALRESERFVRATIDALSEHICVVDETGRLLAVNKA 290

Query: 434 IATILGLASGSMHGPIRNWLPYI---------HINDRDNFRTILDSFVGYRRGRLQYEFR 484
            A   G  S  +         Y+          + D       + + +   +    YE+R
Sbjct: 291 WAN-YGNDSDEVTAIDWRGFNYLTVCDAAAASGLEDGRLLAQGMRAVLAGTQEDFHYEYR 349

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              A           R         +R +    DIT+ K + + +   A  DNLTG+PNR
Sbjct: 350 CGTAA---RPSWFLARLTRFPLDGPMRIVVSHEDITDSKLAQKHLTYLAHYDNLTGLPNR 406

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F DRL  +L  +    N    VM ID+D +K +ND LG A GD VL   +RRI + L+
Sbjct: 407 VLFYDRLKQVLLQAERS-NWTVGVMFIDLDHFKAVNDTLGHAAGDTVLQQASRRILDSLR 465

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D + RL G+ FG+ L         A  A  + +++++P  +   E+ VT  IG   + 
Sbjct: 466 ANDTVGRLGGDEFGVFLPDLATPQDAAMLAGKITQALSLPFVIAGTELFVTPIIGITLYP 525

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
               T+  ++ +A+ AMY AK  G N  + F             ++  L  A+E  EL L
Sbjct: 526 RDGNTADVLISSADTAMYRAKELGRNGHQFFTPHMTARMSAQSRLESGLRKALERQELSL 585

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + +    I G+EAL++W HP+ G IS ++F+ IAE+  +I  I  ++++      
Sbjct: 586 HYQPQVDIASGRITGVEALLRWHHPEMGIISPAQFIPIAEDTGLIVPIGAWVMQAACLQN 645

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           ++W+      PI + +N++++    N++   ++ ++  T    S ++L  +E +VM N E
Sbjct: 646 MAWQRAGLA-PIVMAVNLSARQFKHNDVETMVREVLQDTGLDGSYLELEVTEGIVMENTE 704

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRS 901
                +  L+ IG+ L+LDDFGT  S L YL   P DT+K + S ++G  +     I  +
Sbjct: 705 ALIATMDALKAIGVRLSLDDFGTGYSNLVYLKRFPLDTIKIDRSFVSGIGQGDDAVIAAT 764

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +I +  ++   +IA+ +        L ++GCD +Q    + PL   +   LL +  P 
Sbjct: 765 VITLGHHLNLKVIAEGVETPDQRNVLQQLGCDIMQGYLFSRPLTAEATTALLWQHQPG 822


>gi|196041007|ref|ZP_03108304.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196028175|gb|EDX66785.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 735

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 162/736 (22%), Positives = 319/736 (43%), Gaps = 32/736 (4%)

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
            +  +LI    ++  +  ++I       + +   + +   T   +     LF ++     
Sbjct: 4   TNTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGIKP 63

Query: 306 VTASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWFIGL 354
            +     +  ASI+L     I+Y   K            ++    ++P + +I  +   L
Sbjct: 64  SSEVSYLVHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIL 123

Query: 355 W------MAITKRLDNDIIQPALVGGL----VLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +        +   + + I+       +      ++        Q           +    
Sbjct: 124 FQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGVSALSKSE 183

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R         D V+  ++      +     ++    +        + L +I   D D  
Sbjct: 184 QRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLL 241

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L   +         E R +  +  ++++ I + P    N +++   GIA DIT   +
Sbjct: 242 QKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYE 298

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG
Sbjct: 299 KQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLG 357

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P
Sbjct: 358 HGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKP 417

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             + + E+++T SIG A +       +E++KNA++AMY AK  G N    F      +  
Sbjct: 418 FFIKDEELSITPSIGIAMYPDCGTNVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQN 477

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AE
Sbjct: 478 ESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAE 537

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T 
Sbjct: 538 ETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETE 596

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K
Sbjct: 597 LKPEALDIEITESIAINQNQSVVSKLEQLQDLGIQISIDDFGTGYSSLAYLTKYPINTLK 656

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
                + G   +    AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   +
Sbjct: 657 IAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFI 716

Query: 941 ASPLGFNSILKLLKER 956
           + P+    + +LL ++
Sbjct: 717 SKPVSSKDVWRLLHKK 732


>gi|127513706|ref|YP_001094903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella loihica PV-4]
 gi|126639001|gb|ABO24644.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella loihica PV-4]
          Length = 1010

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/574 (25%), Positives = 257/574 (44%), Gaps = 12/574 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            T +  V +     + +    E  +     S + +   D     +T       I G +   
Sbjct: 436  TRMCGVHSDITEQKKVQESLELAASVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEE 495

Query: 445  -MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             +   IR          R  +  +  +      G  Q E  ++    + + + + I  + 
Sbjct: 496  ALTQNIRILQSSRTP--RSQYDEMNSAIRD--TGYWQGELWIKNKSGEEYMVWLTINTIF 551

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + +G + R + + +DITE+K++   I   A  D LTG+PNR+  L+ L T +     + +
Sbjct: 552  DQHGQVYRRVALFSDITEKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRN-H 610

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                +M +D+D +K++ND LG  +GD +L    +R+   ++  D++ARL G+ F ++L  
Sbjct: 611  SHFALMFLDLDFFKEVNDTLGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSG 670

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++   +   A ++ + IA P +L +    ++ASIG   +     +   +LK+A+ AMY 
Sbjct: 671  IDSPSGVERVAQSILERIAEPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYA 730

Query: 684  AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK +G N    F  S       R+ + +DL  A+   E  L Y PI+ +    +   EAL
Sbjct: 731  AKEQGRNRFHYFTPSMQEYARYRMALIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEAL 790

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            I+W HP+ G +S  EF+ +AEE  +I  I  ++ E+ A+    WR Q  +  I I IN +
Sbjct: 791  IRWVHPQRGLVSPGEFIPVAEETGLINEIGNWVFEKAAQQSARWRTQHGVE-IQISINKS 849

Query: 802  SKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
                 D  +      AL+     S + I +  +E +++         L   R  GI ++L
Sbjct: 850  PIQFRDEGDTFSDWLALLRHLELSSNAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSL 909

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S L+YL     D +K + S           +A+  +II MA  +   +IA+ +
Sbjct: 910  DDFGTGYSSLAYLKKFDIDYLKIDQSFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGV 969

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              +     L   GCD+ Q    + P+      +L
Sbjct: 970  ETQFQHDILASAGCDFAQGYLYSKPVSLPEFERL 1003



 Score =  122 bits (306), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 1/156 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++ +    +  +         + +  ER +L +  S   +WDWDI  +     P  A +L
Sbjct: 304 MVDMVIAGLIDITEHKRADMAMRTSQERLALVLESSDLGMWDWDIKSNETKRNPWCAKVL 363

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     ++   R W+  IH  DR      +D  +     +   E+R+ +   + HW++  
Sbjct: 364 GCDLERLNRDSRIWIDAIHPQDRMAVLNSIDRHLKGETQKHYIEYRLISLSGEEHWILDT 423

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            + +  + NG   R  G+ +DITEQKK  E +   A
Sbjct: 424 GKVVSRDRNGLPTRMCGVHSDITEQKKVQESLELAA 459



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 91/317 (28%), Gaps = 10/317 (3%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-YLHWNRWH 279
              +  +V  Y ++     S+   L    +        +    +   +    ++      
Sbjct: 13  AALLLIMVFIYDAVPRHHRSEYFLLWRLIMGAVIGGVTVLTMMTSWEYQPGVFIDTRSVV 72

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA-- 337
             +  + F G+           Y          + +  I++   +  ++   +    A  
Sbjct: 73  LAISGLFFGGLPTFVAASVACAYRLFQGGDGMLVGVTVILVSALFGSLWRYYRKTTIADL 132

Query: 338 ---VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
               L +  ++L F     L++       + ++Q AL   L+  ++     ++       
Sbjct: 133 SFIELYLFGFLLHFSTLSLLFILPFSMFVDLLVQIALPVMLIFPIVTALLGMMLARRLEV 192

Query: 395 YFSQGIF-SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                I   D              +    + +  +   P +  +L  +   +    R W 
Sbjct: 193 ERDAKIQLQDDFIFRSQFNVGNMGIAITSVDQHWIKVNPRLCKMLKYSETELLN--RTWT 250

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              +  D     T     +       + + R  A D +  +  + +    N N  +   I
Sbjct: 251 ELTYFEDLKADMTQFQRMLKGEIDAYEMDKRFVAKDGEIVYTHLTVACRRNHN-MVDMVI 309

Query: 514 GIANDITEQKKSLEGIL 530
               DITE K++   + 
Sbjct: 310 AGLIDITEHKRADMAMR 326


>gi|89094353|ref|ZP_01167294.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
 gi|89081412|gb|EAR60643.1| regulatory component of sensory transduction system
           [Oceanospirillum sp. MED92]
          Length = 872

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 149/575 (25%), Positives = 273/575 (47%), Gaps = 13/575 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I F + Q +       + +       S AV  S   +    +               G +
Sbjct: 296 INFQLQQEIDVRLRAEENLRV----LSQAVSQSPISIIIAGVDGGVEYVNQAFTDCSGFS 351

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G    +L  +  + +      L   +   +   + E      + Q +W    I P
Sbjct: 352 VEEIKGNDFTFLNNL--DSQPELSKELWDAINNGQE-WRGELANLRKNGQRYWEYTHISP 408

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +++  G I  Y+ I NDITE+K+  + I+  A  D+LT +PNR   +DRL   +  ++ +
Sbjct: 409 VTDETGQITHYLIIKNDITERKEQEQKIIHQAHFDSLTELPNRSLAMDRLAQGVIKASRN 468

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +++   +M ID+D +K +ND LG  +GD +L+  ++R+ + ++  D +ARL G+ F II+
Sbjct: 469 NDV-LALMFIDLDGFKNVNDSLGHDIGDQLLIHASKRLSDSVRNTDTVARLGGDEFLIIM 527

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +          +++S   P N+   E+ VT SIG + +         +L+NA+LAM
Sbjct: 528 EGLVSRRDCLPVLNKIKESFGAPFNIGSNELKVTPSIGLSLFPDDGQDGDVLLRNADLAM 587

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F     ++ R  ++    L  A+E  EL+L+Y PI+     E+ GLE
Sbjct: 588 YQAKEAGRNTHHFFNQEMHKNLRRRLEIENQLKHALEKGELFLLYQPIVEAKTYELKGLE 647

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+WD+   G +   EF+ +AE+  +I  I  +++  +   +  W        I I IN
Sbjct: 648 ALIRWDNELLGRVMPDEFISVAEQSGLIIPIGNWLVNEVLAQMKCWHGSVL-EDIAISIN 706

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ + + D  L   +   + K  ++ S++ L  +E +++ NP  ++  L RL+ +G+ L 
Sbjct: 707 VSPRQIQDQSLQPLINDALEKYSFTASKLILEVTEGLLIRNPLEAKSNLQRLKDLGVQLA 766

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LS L   PFD +K + + +      +   A++ + + M + +   I+A+ 
Sbjct: 767 MDDFGTGYSSLSNLKNFPFDILKIDRTFVRDIEKDDDDYALVSAAVSMGRGLGLRIVAEG 826

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           I  +  ++ L+ M CD +Q  + + PL   +I   
Sbjct: 827 IETKNQLEILSDMQCDSVQGFYFSRPLSAEAIKDW 861


>gi|307824848|ref|ZP_07655071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307734206|gb|EFO05060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1017

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 151/613 (24%), Positives = 281/613 (45%), Gaps = 32/613 (5%)

Query: 376  VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPD 433
            ++ ++      + + L      +          +A     S + +   D   + +     
Sbjct: 407  LIDLMRGLTEDLSYALDNFDREKLRLKAEHELRIAAAAFESQEGILVTDADNNILRVNKS 466

Query: 434  IATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
               + G ++  + G     L            F   +   +  R    Q E   +  +  
Sbjct: 467  FTQLTGYSADEVIGKSAGILKSGRQAPE----FYAAMWESI-NRDKYWQGEIWNKRKNGN 521

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             +   + I  ++N  G +  Y+G   DI+++K   E I   A+ D+LT +PNR    DRL
Sbjct: 522  IYPEWLCITAITNPEGAVTNYVGTFTDISQRKADEERIKDLAYYDSLTKLPNRTLLFDRL 581

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               L+ S  +      +M +D+D +K +ND LG   GD +L+ + RR+   ++  D +AR
Sbjct: 582  NLALNASNRN-KTHGALMFLDLDNFKTLNDTLGHDRGDQLLIEVGRRLQSCVREVDTVAR 640

Query: 612  LSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLER---------EITVTAS 657
            L G+ F ++L   +        +    A  +R ++A    L            E   T S
Sbjct: 641  LGGDEFVVMLECLDEQEIEAAVQAHTVAEKIRSNLAEFYLLKSNIDNKLQPFVEHYSTGS 700

Query: 658  IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
            IGF  +   + +S E+LK A+LAMY AK  G N + +F      +  +   ++ DL  A+
Sbjct: 701  IGFVLFLGHETSSEELLKRADLAMYQAKQAGRNVIRAFIPEMQEALNLRASLETDLRNAL 760

Query: 716  ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            +  EL L Y   +       VG EALI+W+  + G IS +EF+ +AEE  +I +I  ++L
Sbjct: 761  DRGELSLHYQVQVD-ASGRPVGAEALIRWNQAERGMISPAEFIPLAEETGLILSIGYWIL 819

Query: 776  ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
            ++    ++ W        + + +NI+S+ L   +  E + A++++T  +P+ +KL  +ES
Sbjct: 820  KQGCETLVDWAKHPETRELKLAVNISSRQLSQADFVERVCAMLAETGANPALLKLEITES 879

Query: 836  VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            V++ N + +   +  +R +G++ ++DDFGT  S LSYL  +P + +K + S +       
Sbjct: 880  VILDNVDDTIAKMHAVRDLGVNFSMDDFGTGYSSLSYLQKLPLEQLKIDQSFVRNMAFNN 939

Query: 894  KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               AI+R+I+ + KN++  +IA+ +   I  + LTR GC   Q      P+  ++  + L
Sbjct: 940  HDSAIIRTILALGKNLDINVIAEGVETTIQRELLTRYGCQKFQGYLFGRPVPADAFKQSL 999

Query: 954  ---KERFPLVKNT 963
               + + P + N 
Sbjct: 1000 LVGQAKKPSMHNA 1012


>gi|289649853|ref|ZP_06481196.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 642

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 152/635 (23%), Positives = 289/635 (45%), Gaps = 20/635 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      + L   I +       Q       VL+ +++ F     ++ ++   
Sbjct: 14  LYGLLSILWFVTCDLLLHFFIKEPARLAFWQLMAGYSWVLLSVVMIFIARDRLRSLIGGD 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              Q   +D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + ++ +  S +    G+   E   R    + +      R +   +G   
Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTFRSVMGDDGQPR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSA-RASKCGCALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G  
Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  A+E  +L + Y P+  L+   I G+EAL++W HP+
Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAIELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +   + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           L   GC   Q    A P+     +       P+ K
Sbjct: 608 LLGNGCQLGQGYWFARPM-VAQAIDW--THAPVFK 639


>gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 705

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 139/585 (23%), Positives = 261/585 (44%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H +      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKSFGDYLKSHSMILEEQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSGNDVE 238

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + I  +      G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 239 VEIHRQAYR--TGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A     +   + +++D +K IN+  G  +GD VL+ ++ R+ E L   D L R+ G
Sbjct: 297 LTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +IL+  +           +RK++ +P ++  + I +TASIG A +      + E++
Sbjct: 356 DEFALILMIRDGQADTRKTLERIRKALRVPFHVEGQSIVMTASIGIALYPEDGEDARELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  AK  G +    +          R+ ++  L  AVE     +VY P + L D
Sbjct: 416 RHAYTAMNSAKKFGIDSYRFYTAQMNADVSARLELETALRDAVEKQAFEIVYQPKLNLDD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRICGLEALLRWPRPGQPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGL 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++ + + ++ L   ++  ++K    P  +++  +ES +M N   +   L  L+
Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTKHRVEPRWLEVELTESSLMENTSHTIATLETLK 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P   +K + + +    S  +  AI R+II +A ++ 
Sbjct: 595 SAGVSISIDDFGTGYSSLAYLRRFPIHKLKIDIAFVREVTSNPQDAAIARAIIELAHSLG 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    + + L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRESHCDQIQGYLISKPLPLAELERFLRA 699


>gi|313202379|ref|YP_004041037.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441695|gb|ADQ85801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 681

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/565 (25%), Positives = 271/565 (47%), Gaps = 10/565 (1%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +  +  + E  SL    S +++  +D    R       A + G+A   + G   + 
Sbjct: 122 ARDVTDAMRREREYHSLI-ENSPNLIVRFDTACRRTFVNQKTANLYGVAEDVLLGKTPSE 180

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
            P     D       +   V         +    A D     + I +    +++G  +  
Sbjct: 181 FPG---GDSAYGYEQVVKEVFKSGRSAAMDLHWHAPDGNSRIIHIWLAAELDASGLPIAV 237

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           IG+  D+TE  +  E I   A+ D LT +PNR   +DR+   +  +         ++++D
Sbjct: 238 IGMGQDVTETYEYQERIHHLAYFDTLTKLPNRALLIDRVEQTIAEAERHA-YPFGLIMLD 296

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K+IND LG  +GD +L  +  R+ + ++  D +ARL G+ FGI++        I  
Sbjct: 297 LDRFKEINDTLGHTLGDVLLCEVASRLEKCVRPYDTVARLGGDEFGILVSEMRVPENITR 356

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + ++   P  +   ++ VTAS+G A++ S      ++LK A+ A++HAKH G N+ 
Sbjct: 357 VADKVLQAFDQPFVVDGHDVFVTASLGIAAYPSDSQAVDDLLKYADSALFHAKHLGRNNF 416

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +        ++R  ++ +L  A++  E  L Y P++ L   EI+G EAL++W H    
Sbjct: 417 QFYSADLTIKAAERREVETNLRFALKKEEFLLHYQPLVDLATREIIGAEALLRWQHESGK 476

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ IAEE  +I  I  +++      +    ++    P+ + +N++++  L N+L
Sbjct: 477 LIMPDKFIGIAEETGLIIPIGEWVMRSAC-QVAVALNRGRPRPVTVAVNLSTRQFLHNDL 535

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +QA++++T      IKL  +ES+++ N +  + +L  L  +G+ +++DDFGT  S L
Sbjct: 536 VSSIQAILAETGCHTDWIKLEITESLLLENTDNIQRMLQSLSAMGLCISIDDFGTGYSAL 595

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   P   +K + S  +  T+   R  I+++I+ +A+N+   ++A+ +        L 
Sbjct: 596 SYLHRFPVRELKIDRSFTSDITDNAERALIVQAIVSLARNLNKNVVAEGVETLEQADYLH 655

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
           +MGC   Q    + PL     L LL
Sbjct: 656 KMGCPQAQGYLFSKPLPLEQFLALL 680



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 17/144 (11%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454
             + I +  +     +     +VW  D     +    + A + G++    + G       
Sbjct: 5   AQEKITAREKYLRTLLDNFPFMVWLKDTKSRLLAANTEYARVAGVSSPHELEGKTD--FD 62

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEF------RVRAADNQFHWMIIRIRPMSNSNGD 508
           +           +   +V   R  ++ E       R+R AD +  W+      +   +G+
Sbjct: 63  FFDPE-------LAKEYVEGDRQAMESELPVGTVNRLRTADGKDIWIESYKSRLV-IDGN 114

Query: 509 ILRYIGIANDITEQKKSLEGILCN 532
           I   +G A D+T+  +        
Sbjct: 115 IEGTLGYARDVTDAMRREREYHSL 138


>gi|302878069|ref|YP_003846633.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302580858|gb|ADL54869.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1275

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 138/577 (23%), Positives = 268/577 (46%), Gaps = 13/577 (2%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            I F + Q  + T    Q   ++ +        S D +   +   + V        I G  
Sbjct: 567  ISFALKQIHINTIKRQQE--TELKLAEQVFSRSADAMIITNPDNNIVRVNQAFCEITGYT 624

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            S  + G     L      D D FR++  S     +G  Q E   R  + + +     I  
Sbjct: 625  SEEVIGKNPRILKS-EKQDHDFFRSLWRSL--ELQGSWQGEIWNRRKNGEIYPEWSSINA 681

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +++G ++ Y  + +D+  QKK+L  +      D LT +PNR    DR+ + +  +   
Sbjct: 682  VKDASGRVVNYFAVFSDLL-QKKALAELDHLKHYDALTDLPNRALLEDRIESSITHARQY 740

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +     V+ +++D +  +ND+L  A GD VL++  +R+ +       ++RLS + F I L
Sbjct: 741  ERF-IGVIFLNLDHFHTVNDMLSHAGGDQVLIATAKRLMDAAPAQASISRLSADTFVIAL 799

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               N S +I   A  + + I  P+ + ++ + ++A +G + +      ++ ++K+A+ A+
Sbjct: 800  PDLNTSEEINRTAELIAQKIYQPLTVADQSVQLSARMGISVYPIDGNDATTLMKHADAAL 859

Query: 682  YHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
              AK  G  +   F    ++      + +  +L  A+  + L L Y P + ++  +I+G 
Sbjct: 860  ADAKQCGVRNSFRFYSSSMNEHAHKLLTMGAELRNAISQNRLVLHYQPQVDIITGQIIGA 919

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EALI+ +HP+ G IS  EF+ +AEE  +I  +  +++    R +  W        + I I
Sbjct: 920  EALIRINHPERGIISPGEFISVAEETGLIIPMGTWVIREACRQMQQWH-LDKNIELTIAI 978

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++   L  ++L E +   +  +  +   ++L F+ES +M N   +  ++ + + +G+ L
Sbjct: 979  NLSPLQLHQSDLPEIVSLALHDSGLNARYLELEFTESAIMKNVRETVAIMNKFKAMGLHL 1038

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            ++DDFGT  S LSYL   P D +K + S ++         AI+++II + + +  T IA+
Sbjct: 1039 SIDDFGTGYSSLSYLKQFPVDKLKIDQSFVSNITQDPNDAAIVQAIIALGRTLGMTTIAE 1098

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  E  +  L  + C  +Q    ++PL       LL
Sbjct: 1099 GVETEAQLGYLRSVNCKEMQGYLYSAPLPAEEFAALL 1135



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 16/158 (10%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I    +Q  +     ++ I +        +      V+  D   + +      A  LG+ 
Sbjct: 264 IKLNQLQADMLNRQLAESIMAWKRPFLDLLDNLPLKVFIKDTRSNYIACNKSYADDLGIQ 323

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH------WM 495
              + G            D D +   L         R+    +       +       W+
Sbjct: 324 QSEIAGKS----------DLDFYPASLAQHYREDDARVIESDQTITMVGPYLAGSRQTWV 373

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            I   P  +  GDI   IGI  D+T + +  + +   A
Sbjct: 374 QISKSPWHDGRGDIGGVIGIFQDVTHEYQMNKALQRKA 411


>gi|254000421|ref|YP_003052484.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253987100|gb|ACT51957.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 681

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/565 (25%), Positives = 271/565 (47%), Gaps = 10/565 (1%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +  I  + E  SL    S +++  +D    R       A + G+A   + G   + 
Sbjct: 122 ARDVTDAIRREREYHSLI-ENSPNLIVRFDTACRRTFVNQKTANLYGVAEDVLLGKTPSE 180

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
            P     D       +   V         +    A D     + I +    +++G  +  
Sbjct: 181 FPG---GDSAYGYEQVVKEVFKSGRSAAMDLHWHAPDGNSRIIHIWLAAELDASGLPIAV 237

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           IG+  D+TE  +  E I   A+ D LT +PNR   +DR+   +  +         ++++D
Sbjct: 238 IGMGQDVTETYEYQERIHHLAYFDTLTKLPNRALLIDRVEQTIAEAERHA-YPFGLIMLD 296

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K+IND LG  +GD +L  +  R+ + ++  D +ARL G+ FGI++        I  
Sbjct: 297 LDRFKEINDTLGHTLGDVLLCEVASRLEKCVRPYDTVARLGGDEFGILVSEMRVPENITR 356

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + ++   P  +   ++ VTAS+G A++ S      ++LK A+ A++HAKH G N+ 
Sbjct: 357 VADKVLQAFDQPFVVDGHDVFVTASLGIAAYPSDSQAVDDLLKYADSALFHAKHLGRNNF 416

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +        ++R  ++ +L  A++  E  L Y P++ L   EI+G EAL++W H    
Sbjct: 417 QFYSADLTIKAAERREVETNLRFALKKEEFLLHYQPLVDLATREIIGAEALLRWQHESGK 476

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ IAEE  +I  I  +++      +    ++    P+ + +N++++  L N+L
Sbjct: 477 LIMPDKFIGIAEETGLIIPIGEWVMRSAC-QVAVALNRGRPRPVTVAVNLSTRQFLHNDL 535

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +QA++++T      IKL  +ES+++ N +  + +L  L  +G+ +++DDFGT  S L
Sbjct: 536 VSSIQAILAETGCHTDWIKLEITESLLLENTDNIQRMLQSLSAMGLCISIDDFGTGYSAL 595

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   P   +K + S  +  T+   R  I+++I+ +A+N+   ++A+ +        L 
Sbjct: 596 SYLHRFPVRELKIDRSFTSDITDNAERALIVQAIVSLARNLNKNVVAEGVETLEQADYLH 655

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
           +MGC   Q    + PL     L LL
Sbjct: 656 KMGCPQAQGYLFSKPLPLEQFLALL 680



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 17/144 (11%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454
             + I +  +     +     +VW  D     +    + A + G++    + G       
Sbjct: 5   AQEKITAREKYLRTLLDNFPFMVWLKDTKSRLLAANTEYARVAGVSSPHELEGKTD--FD 62

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEF------RVRAADNQFHWMIIRIRPMSNSNGD 508
           +           +   +V   R  ++ E       R+R AD +  W+      +   +G+
Sbjct: 63  FFDPE-------LAKEYVEGDRQAMESELPVGTVNRLRTADGKDIWIESYKSRLV-IDGN 114

Query: 509 ILRYIGIANDITEQKKSLEGILCN 532
           I   +G A D+T+  +        
Sbjct: 115 IEGTLGYARDVTDAIRREREYHSL 138


>gi|218531236|ref|YP_002422052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacterium chloromethanicum CM4]
 gi|218523539|gb|ACK84124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacterium chloromethanicum CM4]
          Length = 1003

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/579 (25%), Positives = 256/579 (44%), Gaps = 14/579 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                   + A+      + S           +   V+   +    V     +A + G   
Sbjct: 431  HICTFTDLTASRQSEAALRSAEADYQSLFQNAVIGVYRARLDGGIVQANRALARLHGYGD 490

Query: 443  GSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              +  P   +    YI     + F   L+            E R R A  +  W+     
Sbjct: 491  ADLSLPEGGFSHDWYIEPGRHEAFLACLER--EGHVEDFVSEVR-RHAGGERIWVSETAW 547

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             + ++ G  + + G   D TE+K++   I   A  D LTG+PNR+ F + L   +D +  
Sbjct: 548  VVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQETLAREIDGARR 607

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D      V+  D+D++K +ND  G   GD +L  +  R+   L+  D++ARL G+ F II
Sbjct: 608  DGG-SVVVLCCDLDRFKAVNDTFGHPAGDALLRVIAGRLRATLREGDVVARLGGDEFAII 666

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L S     +IA FA  + ++   P++L  R  TV  SIG A W     ++  + KNA++A
Sbjct: 667  LPSRGKQRRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHGDSADTLFKNADIA 726

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +Y AK  G N    +      +      ++ ++  ++ +    L Y PI  L D    G 
Sbjct: 727  LYRAKDSGRNTFRFYESGMALAVVTRNLLEIEMRESIRSGGFALHYQPIFALADGAPQGF 786

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W+HP  G IS   F+ +AEE  +I  +  + L    R+  SW        + + +
Sbjct: 787  EALLRWNHPLRGPISPGAFIPLAEESGLITQLGAWALHEACREAASWP-----GDLRVAV 841

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N+++       L + +   ++ +     R++L  +ESV+M + +     L RLR +G+ +
Sbjct: 842  NVSAVQFRKTGLEQSVMRALAASGLPAGRLELEITESVLMQDSDAVIGSLHRLRAMGVRI 901

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKD 917
             LDDFGT  S LSYL   PFD +K + + +         A++R+++ + + +   I A+ 
Sbjct: 902  ALDDFGTGYSSLSYLCRFPFDKIKIDRAFIRDIDEPVAAAVVRAVVGLGERLGMAITAEG 961

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  E  + ++ R GC  +Q   +  PL     + L+  R
Sbjct: 962  VETEEQLVQVRRKGCTEVQGFLLGRPLPAAEAMTLVAGR 1000



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H+L      + + +     ++A   +    W  D     +  +  IA I G  +     P
Sbjct: 181 HLLEWEARQRALEAA---HAMAEQIAAFGHWRIDAGTRTIAWSDGIARIFGRNAERATLP 237

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +   + + H +DR+     +D  +  R     G  ++  R+   D +   + +      +
Sbjct: 238 LETHIGFYHPDDRERVWAAMDEALAGRSRTLGGGYEHRSRILRPDGEIRVVAVHGIGEHD 297

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
             G ++   G+  D+T   +S + + 
Sbjct: 298 EAGRLVSIFGVCLDVTGMARSEQRLR 323


>gi|239995544|ref|ZP_04716068.1| sensory box protein [Alteromonas macleodii ATCC 27126]
          Length = 1517

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 131/579 (22%), Positives = 263/579 (45%), Gaps = 16/579 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +   L   +  +           ++    + V+  +     ++         G     
Sbjct: 942  VRMTGTLKNIHHLKEAEEQLNLFKRSIENISEGVFITNTQFKFISVNNAYCGYTGETRDQ 1001

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  ++  +++ +    F   +   +  + G    E      + + + M + I  + +
Sbjct: 1002 ALASYMHF--HLYPD---AFTEEIKKTLKAK-GNWSGEVESVRVNGERYEMELNIDAVHD 1055

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             +G I  ++G+ +DIT +K + + +L  A  D LT +PNR  F          +      
Sbjct: 1056 DDGKISHFVGVFSDITSRKSTEKELLKLANTDPLTELPNRSFF-----QASHQNLVRKGA 1110

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            + T++ +D+D +KKIND LG   GD ++  + +R+  +        RL G+ F +++   
Sbjct: 1111 QHTLLCLDMDNFKKINDSLGHQTGDILIKQIAKRLQRITGKSATCYRLGGDEFSVLMEDN 1170

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +   +  +A  +  +++ P  + ++E  + ASIG A +     +  EMLKNA+ AMY A
Sbjct: 1171 ADIHTVTHYAQNLLDTLSRPFIINKQEFVLGASIGIAFFPDDGTSPQEMLKNADTAMYFA 1230

Query: 685  KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K+ GGN  + F   ++     ++ I+  +   +++    + Y P + +   ++V +EAL+
Sbjct: 1231 KNNGGNSYQFFSGEMNQNAVRQLQIENLIRQGIKDDLFTVYYQPKVDIASGKLVSMEALV 1290

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +++HP+ G +S  +F+ +AE+   I  I   +L +   D   W +Q       + +NI++
Sbjct: 1291 RFEHPQKGIVSPGQFIPLAEQTGQIIEIGEQVLRKACADTKRWVNQGLFSG-RVAVNISA 1349

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            K     +L + +  ++S    SP  ++   +E  +M +PE    ++ RLR+ GI L LDD
Sbjct: 1350 KQFELPDLDDRINKILSDIGLSPLHLECEITEGTLMESPENGLQMMTRLRERGIHLALDD 1409

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S L+YL   P +T+K + + +    +      +  +II +A N+   ++A+ +  
Sbjct: 1410 FGTGYSSLAYLKRFPLNTLKIDKAFIDDIAKSNVDRHMAAAIINIAHNLGLKVVAEGVEE 1469

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            E  +  L R  C+ +Q    + PL      KLL E   L
Sbjct: 1470 EAQLDILRRYDCEMLQGFLYSRPLNAERFEKLLTENQKL 1508



 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 4/173 (2%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGD 416
           +   ++       +      ++    F  I         +Q  I    ER  L +  SGD
Sbjct: 790 LQIIIERPPWLHTVALVFYCLIAFAIFAFIVRQYQIRKANQLAIKESEERLKLTLWSSGD 849

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +WDWD+ R +V       T L      +          IH ND +  +T L   +    
Sbjct: 850 ELWDWDVYRGQVYRANTWGT-LDFPQDDIRTTGAYDAN-IHPNDVNRVKTALRDHLEGNS 907

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
              +  +R +   NQ+ W++ R + +  + N   +R  G   +I   K++ E 
Sbjct: 908 DFYELAYRAKTFKNQWIWILDRGKVVERDHNAQPVRMTGTLKNIHHLKEAEEQ 960


>gi|49478974|ref|YP_039341.1| hypothetical protein BT9727_5032 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330530|gb|AAT61176.1| conserved hypothetical protein, PAS/PAC domain, EAL domain, GGDEF
           domain [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 892

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L   +     
Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 409

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 410 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG  +GD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|53805211|ref|YP_113066.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758972|gb|AAU93263.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 1214

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/571 (25%), Positives = 279/571 (48%), Gaps = 17/571 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
             +       R +     + + +         +      + I G     + G   R +   
Sbjct: 648  RREAVEAELRLAATTFETDEAILIAGADGRILRVNAAFSRITGYRQEDVVGRNPRLFKSG 707

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +H    + +R +  S    + GR Q E   R  + + +     I  + ++NGDI  Y+ I
Sbjct: 708  LH--GAEFYREVWRSL--EQTGRWQGEIWNRRKNGEVYPERKTITAVRSANGDITHYVAI 763

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ++DI+E K++ E I   A+ D+LTG+PNR    +RLT  +  +A  +     ++ +D+D 
Sbjct: 764  SSDISELKRTEEKIRQLAYYDSLTGLPNRSLIFERLTQQMK-AARREGTYGALLFMDLDY 822

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKI 630
            +K +ND LG  +GD +LV +  R+   L+  +  ARL G+ F ++L          + + 
Sbjct: 823  FKTLNDSLGHHMGDRLLVQVAERLKNCLEDEEAAARLGGDEFVVLLAPAKPSASVAAGQA 882

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  +R+ ++ P  L +    ++ SIG A +     T+ ++LK A+ AMY AK+ G +
Sbjct: 883  IVHARRVRELLSAPFQLDDYVHYISVSIGIALFPDGANTAEDVLKQADTAMYVAKNEGRD 942

Query: 691  HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             V  +  +       R+ +++ L  A+ N E  + Y P + L D  +VG EALI+W HP+
Sbjct: 943  GVRFYESAMEAVVRGRLELEKALRKALANDEFEVYYQPQM-LGDGRVVGAEALIRWFHPE 1001

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G IS  +F+ + E+  MI  +   +L R    +   R +    P  + +N++ +  + +
Sbjct: 1002 RGAISPDQFIPVCEQNGMILRVGAIVLRRACACLAEIRARGLALP-KLSVNVSPRQFMRS 1060

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +L   ++    +   SP+ + L  +E V++ + E +   +GRL+ +G+S ++DDFGT  S
Sbjct: 1061 DLMTQLEQFCLENGVSPTDLCLELTEGVLLNHTELAVAQIGRLKNLGVSFSIDDFGTGYS 1120

Query: 869  LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L+YL ++P D +K   + +    +     AI+ +I+ MA+++   +IA+ +     ++ 
Sbjct: 1121 SLAYLKHLPLDDLKIASAFVRDLEQDSSDAAIVETIVSMARHLGLDVIAEGVETRTQVEI 1180

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            L R GC   Q ++ A PL  +  ++ + ER 
Sbjct: 1181 LERYGCHRFQGNYFARPLPKDDFIRFVAERQ 1211



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 4/154 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    +Q V       + +    ER  L V      V +WD+        P    I G  
Sbjct: 513 VLQGTLQDVTERWEAERALRQSEERLRLHVEHLPLAVIEWDLDFIVSRWNPAAERIFGYG 572

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  M G        +   D       +   V    G  +       AD +         P
Sbjct: 573 ADRMIGRSAG---ILFPEDVLEQAEAIWREVSGGSGN-RVVTANVTADGRTIRCEWYNTP 628

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           ++  +G ++    + +DIT ++     +   A  
Sbjct: 629 LTTPDGTVIGVASLVDDITRREAVEAELRLAATT 662



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 29/227 (12%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            L + I   +  D +    V  + + +++   T+   V     +     +  ER+ LA  
Sbjct: 353 ALGLEIDAAVRRDRVAAYRVVAIAIALLIAMGTLGFEVSRQRLWLSSRIAKAERRRLAEA 412

Query: 413 G--SGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILD 469
              +    W +D   DR+T + +   I GL   G +    + +       DR+     L 
Sbjct: 413 QRLARVGSWVYDPATDRMTWSEETYRIFGLPFDGEVPHRYQEFAALFVPEDRELIEAALR 472

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDITEQKKSLE 527
                  G ++    VR AD     +  ++        +G +L+  G   D+TE+ ++ E
Sbjct: 473 GGRDDLLG-VERPLCVRRADGAVRQVNFKVELQGRRGDSGPVLQ--GTLQDVTERWEA-E 528

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             L  +               +RL   +      ++L   V+  D+D
Sbjct: 529 RALRQS--------------EERLRLHV------EHLPLAVIEWDLD 555


>gi|27380653|ref|NP_772182.1| hypothetical protein bll5542 [Bradyrhizobium japonicum USDA 110]
 gi|27353818|dbj|BAC50807.1| bll5542 [Bradyrhizobium japonicum USDA 110]
          Length = 835

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/571 (25%), Positives = 260/571 (45%), Gaps = 21/571 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +W +D    +            G +  +    +R  L  I 
Sbjct: 279 ALKRRDASFRLLFDNNPMPMWVFDAETKQFLGVNDAAVQHYGYSRAAF---LRMKLHEIW 335

Query: 458 IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             D  D+    LD             +R   AD     ++   R ++  + D   Y+   
Sbjct: 336 PEDEWDSHAEALDRV--GDTYHSSRNWRHLRADGSEIEVLTFGRRVAFDDRD--GYLVAV 391

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++K+   I   A  D LT +PNR+ F  RL   LD +      R  V+ ID+D +
Sbjct: 392 VDITERRKAEARIAHMAHHDGLTDLPNREYFQQRLKQALDQA---GGKRVGVLYIDLDLF 448

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD +L  +  R+   ++  ++ ARL G+ F +IL ++ +  + +  A  
Sbjct: 449 KNINDSFGHPAGDRLLKEVAERLTTAVRGANLAARLGGDEFAVILAADVSPNEASACAAL 508

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  P  +  +E+ + ASIG A      +TS E+++NA++A+Y AK  GG     F 
Sbjct: 509 LIDMLRAPYEIDGQEMVIGASIGIALSPGDGVTSEELMRNADMALYRAKSDGGGVHHFFE 568

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    R  ++ DL  A  N E  L Y P++ +  + I G E+L++W HP  G IS 
Sbjct: 569 REMDLQAQKRRDMELDLRRAFANGEFELHYQPLVSIASDRISGFESLLRWRHPDKGMISP 628

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ +AE++ +I  +  ++L     + + W        + + +N++        L + +
Sbjct: 629 AEFIPVAEDIGLITQLGEWVLREACAEAVKWP-----VDVKVAVNLSPAQFRSRNLVQVV 683

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + ++++  SP R++L  +ES+ +   + +  +L +LR+ G+ +++DDFGT  S LSYL 
Sbjct: 684 ISALAQSGLSPKRLELEITESIFLAETDANLAILHQLREFGVGISMDDFGTGYSSLSYLR 743

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +         +AI+R+I  + +++  T  A+ +  E  +  L   GC
Sbjct: 744 SFPFDKIKIDRSFVKDLAQRPDCVAIVRAISGLGRSLNITTTAEGVETEDQLDWLRAEGC 803

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +Q    ++      I KLL +        
Sbjct: 804 NEVQGFLFSAARPAAEIEKLLADFGQRASRA 834


>gi|163852480|ref|YP_001640523.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664085|gb|ABY31452.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 1003

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/579 (25%), Positives = 256/579 (44%), Gaps = 14/579 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                   + A+      + S           +   V+   +    V     +A + G   
Sbjct: 431  HICTFTDLTASRQSEAALRSAEADYQSLFQNAVIGVYRARLDGGIVQANRALARLHGYGD 490

Query: 443  GSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              +  P   +    YI     + F   L+            E R R A  +  W+     
Sbjct: 491  ADLSLPEGGFSHDWYIEPGRHEAFLACLER--EGHVEDFVSEVR-RHAGGERIWVSETAW 547

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             + ++ G  + + G   D TE+K++   I   A  D LTG+PNR+ F + L   +D +  
Sbjct: 548  VVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQETLAREIDGARR 607

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D      V+  D+D++K +ND  G   GD +L  +  R+   L+  D++ARL G+ F II
Sbjct: 608  DGG-SVVVLCCDLDRFKAVNDTFGHPAGDALLRVIAGRLRATLREGDVVARLGGDEFAII 666

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L S     +IA FA  + ++   P++L  R  TV  SIG A W     ++  + KNA++A
Sbjct: 667  LPSRGKQRRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHGDSADTLFKNADIA 726

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +Y AK  G N    +      +      ++ ++  ++ +    L Y PI  L D    G 
Sbjct: 727  LYRAKDSGRNTFRFYESGMALAVVTRNLLEIEMRESIRSGGFALHYQPIFALADGAPQGF 786

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W+HP  G IS   F+ +AEE  +I  +  + L    R+  SW        + + +
Sbjct: 787  EALLRWNHPLRGPISPGAFIPLAEESGLITQLGAWALHEACREAASWP-----GDLRVAV 841

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N+++       L + +   ++ +     R++L  +ESV+M + +     L RLR +G+ +
Sbjct: 842  NVSAVQFRKTGLEQSVMRALAASGLPAGRLELEITESVLMQDSDAVIGSLHRLRAMGVRI 901

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKD 917
             LDDFGT  S LSYL   PFD +K + + +         A++R+++ + + +   I A+ 
Sbjct: 902  ALDDFGTGYSSLSYLCRFPFDKIKIDRAFIRDIDEPVAAAVVRAVVGLGERLGMAITAEG 961

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  E  + ++ R GC  +Q   +  PL     + L+  R
Sbjct: 962  VETEEQLVQVRRKGCTEVQGFLLGRPLPAAEAMTLVAGR 1000



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H+L      + + +     ++A   +    W  D     +  +  IA I G  +     P
Sbjct: 181 HLLEWEARQRALEAA---HAMAEQIAAFGHWRIDAATRTIAWSDGIARIFGRNAERATLP 237

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +   + + H +DR+     +D  +  R     G  ++  R+   D +   + +      +
Sbjct: 238 LETHIGFYHPDDRERVWAAMDEALAGRSRTLGGGYEHRSRILRPDGEIRVVAVHGIGEHD 297

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
             G ++   G+  D+T   +S + + 
Sbjct: 298 EAGRLVSIFGVCLDVTGMARSEQRLR 323


>gi|299068767|emb|CBJ40007.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           CMR15]
          Length = 625

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 148/567 (26%), Positives = 259/567 (45%), Gaps = 23/567 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHIND--RDNFR 465
            V    + +   D  R      P  A +LG+   ++ G          I   D    +  
Sbjct: 48  MVNALTEGLLVCDGQRRITYANPSAARLLGVPLDALVGVRLPEVVASAIDEFDTPIRDVD 107

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513
                 +   + +L   F +R  D +  W+     P+    G+ +              +
Sbjct: 108 WPDSEVLAEGQPQLNQIFGMRCLDGRTVWVSTNWTPLYAEAGEPVTAAPAARHAQPYAVL 167

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D+
Sbjct: 168 VSLVDITQIREAQQRIRHLATHDTLTGLLNRCALEDRLEHALALARRN-RSRVSVMFLDL 226

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG   GD +L  +  R+    +  D +ARL G+ F ++L S +        
Sbjct: 227 DRFKNVNDTLGHQFGDQLLREVAARLQACAREADTVARLGGDEFVVMLESLDGVGT-RRV 285

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P ++  +E+ +  SIG A           +L+ A+ AMY AK RG N+ +
Sbjct: 286 AERILAAIGAPFHIDGQELFLGVSIGIAVAPHDGDDPHTLLRKADAAMYLAKERGRNNFQ 345

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W+   +G 
Sbjct: 346 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGVEALIRWNSTDFGR 405

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L 
Sbjct: 406 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 464

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++ +      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S LS
Sbjct: 465 GMVRGALTSSGLPGEAVELEMTEGILIRDDPSLHTLLTELRALGVSLALDDFGTGYSSLS 524

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L+ 
Sbjct: 525 YLNRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETAGQLEFLSE 584

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCD  Q   +  PL   ++  L++E 
Sbjct: 585 IGCDEYQGYLLTRPLEPAAMHDLVREH 611


>gi|333022992|ref|ZP_08451056.1| hypothetical protein STTU_0498 [Streptomyces sp. Tu6071]
 gi|332742844|gb|EGJ73285.1| hypothetical protein STTU_0498 [Streptomyces sp. Tu6071]
          Length = 600

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 141/581 (24%), Positives = 252/581 (43%), Gaps = 17/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  + A     + +     R      G+   +   D+    V     +A + G   
Sbjct: 18  EAISRAALGARAAVERALHVSEARFRAVFEGAALGISIADMDGVIVEANDALAGMFGGLV 77

Query: 443 GSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           GS+ G  +R W    H +D      + +  V   R   Q E      D    W  + +  
Sbjct: 78  GSLRGTNVREWA---HPDDSPTVWRLYEELVKGTREYFQAEKPFYRHDGTVLWTNLTVSL 134

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +  G  L  + +  D TE++     +   A  D LTG+PNR  F +RL   L      
Sbjct: 135 LRDDQGRPLYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLDKAL---QAG 191

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620
           +N R  +  +D+D +K +ND LG   GD +LV +  R+        +I+AR+ G+ F  +
Sbjct: 192 ENNRFGLCYLDLDGFKTVNDSLGHDAGDRLLVEVADRLQGCAGGAGEIVARIGGDEFVAL 251

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAEL 679
                   ++ + A  M +++A P+ +  RE+TV  SIG            +E+L++A++
Sbjct: 252 TTGPRAREEVHELAGRMMQALATPVRVDGRELTVRGSIGIVEGPGGGKRGPAEVLRSADI 311

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            MY AK  GGN  E     +         +   L  A+E  E ++ Y P++ L D  + G
Sbjct: 312 TMYRAKAAGGNRYEVADPEADARAITRHGLTTALPAALERGEFFIEYQPLVDLGDGTVHG 371

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFI 796
            EAL++W HP+ G I    F+ +AE   +I  +  ++L+  AR    W+++   P P+ +
Sbjct: 372 AEALVRWSHPQHGTIGPDRFIPLAEHTGLIVPLGRWVLDESARQARLWQEERGGPAPLRV 431

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L    L      ++ +T   P  + L  +ES ++G  +     L RL ++G+
Sbjct: 432 NVNLSPCQLQHPRLVADTVEILERTGLPPGALCLEVTESALIGADDDLLKPLRRLAEMGV 491

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911
            + LDDFGT  S L+ L  +P   +K + +   G          + I+  I+ +A +++ 
Sbjct: 492 DIALDDFGTGYSNLANLRRLPVSVLKLDRAFTRGMQQFPADPVDLKIVEGIVALAHSLDL 551

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +  + +       +L  +GCD  Q  + A P     + +L
Sbjct: 552 AVTVEGVETSAQADQLRELGCDTAQGWYYARPGPAARVREL 592


>gi|229105940|ref|ZP_04236564.1| Sensory box protein [Bacillus cereus Rock3-28]
 gi|228677514|gb|EEL31767.1| Sensory box protein [Bacillus cereus Rock3-28]
          Length = 881

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 185/819 (22%), Positives = 336/819 (41%), Gaps = 70/819 (8%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
            + I L +  +     +L    A+ + ++ YI +  GF  K +   S   L   +   I 
Sbjct: 67  AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFSIKFIKHYSIRGLAQFSFDSIF 126

Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310
           +    I F   + L  + +H          G      L   +         Y     + I
Sbjct: 127 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 186

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN------ 364
              T+  +  Y   F +  G+K       LI    ++ I    +   + K + +      
Sbjct: 187 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 246

Query: 365 ------DIIQPALVGGLVLIVILI------------------------------------ 382
                   I P     +    I+I                                    
Sbjct: 247 YRFDYVRFILPYFSIIMTFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 306

Query: 383 -GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q        +  +    +R         D V+  ++      +     ++    
Sbjct: 307 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGIFQQSNTACESLF--T 364

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +        + L +I   D D  +  L      R   L  E R +  +  ++++ I + P
Sbjct: 365 AYYCEVASHSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 422

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L TIL+ + T 
Sbjct: 423 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 481

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    VM +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L
Sbjct: 482 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 540

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +    A  A  +   +  P  + + E++VT SIG A +       +E++KNA++AM
Sbjct: 541 PDMYSEKSAAFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGNDVTELMKNADMAM 600

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G E
Sbjct: 601 YRAKANGKNRFVFFSKEISIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 660

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N
Sbjct: 661 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 719

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI ++
Sbjct: 720 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 779

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ 
Sbjct: 780 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 839

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  E   K L    CD+IQ   ++ P+    +  LL ++
Sbjct: 840 VETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWMLLHKK 878


>gi|126661089|ref|ZP_01732171.1| hypothetical protein CY0110_06459 [Cyanothece sp. CCY0110]
 gi|126617633|gb|EAZ88420.1| hypothetical protein CY0110_06459 [Cyanothece sp. CCY0110]
          Length = 837

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 148/568 (26%), Positives = 285/568 (50%), Gaps = 6/568 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             +         +    E    A++ +   +       + +        + G     +  
Sbjct: 264 AKIQEKIKIETELKQSKESFQKAIINAPLPIMIHAEDGEILQINDIFTELTGYTHDEI-P 322

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            I  WL   +   ++  R +++          + EF +  +D +   +     P+   + 
Sbjct: 323 TIDTWLEKAYGKRQNIIRPVINHLYDLETKIDEGEFVIDTSDEKQKILNFNSAPLEQLSD 382

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                I +A D+TE+KK+ E +  NA  D LT +PNR  F+DRL   ++           
Sbjct: 383 GRRVVISMAIDVTERKKAEEKLRHNALHDTLTKLPNRLLFIDRLNQSIERIKRHPTYSFA 442

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D++K IND LG  +GD VL+ +  ++   ++  D +AR+ G+ F I+L    + 
Sbjct: 443 VLFIDLDRFKLINDSLGHIIGDRVLIQIATKLTSCVRSLDTVARIGGDEFIILLNDLESK 502

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           +K    A  + +++ +PI + +R I ++ASIG A  + +   + ++++NA+LAMY AK +
Sbjct: 503 IKAIHIAERILETLKLPIIIEQRNIVISASIGIAFNSQNNEEADDIIRNADLAMYKAKEQ 562

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F   + +    R+ ++ +L + +E  E  + Y PII L+D+++VG EAL++W 
Sbjct: 563 GKARYMIFDSVMYAQAQKRLELETNLRIGLEKQEFIVYYQPIISLVDKKLVGFEALVRWQ 622

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKD 804
           HP+ G I  +EF+ ++E+  +I  I  ++L    R + +W+ +      + + IN++ K 
Sbjct: 623 HPQKGLIPPNEFIPVSEDTKLIIPIGEWVLLESCRQLATWQQKYPECSMLKMSINLSIKQ 682

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +N     ++ ++ +T  + + +KL  +ES++M N    R +L +++ +GI L++DDFG
Sbjct: 683 LKNNTFVSKIEKILDQTGLNGNSLKLEITESILMENILELRDILRQIKSLGIELSIDDFG 742

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL  +P D +K + S +     +E    I+ +II +A  +  ++IA+ I  E 
Sbjct: 743 TGYSSLSYLHNLPVDNLKIDRSFVIEMNQSEGNYRIIETIITLAHQLGLSVIAEGIETEQ 802

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL 950
           D++ L  + C++ Q    + PL   +I 
Sbjct: 803 DLQTLRDLQCEFGQGYLFSKPLPSQAIE 830



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 76/251 (30%), Gaps = 6/251 (2%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLAS--IVLYYTYFIIYHGMKGYERAVLLI 341
                 I   +  F   +     T    R   A   I++   +  I   ++G  +  L  
Sbjct: 1   MGATLIILVTSTYFIFDWNRMQKTEQYIRSKTAINFILIGLIFLNILCLLEGVRQIFLFN 60

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
                + +  +  +  +  +    I    ++ G   ++    F + Q         Q  +
Sbjct: 61  SNLDTLALTKLLNYNRVY-KASIYISSGLVIIGFSQLLKKSLFKLRQIANQLNKLEQSWY 119

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +  R         +++  +D  R                   +     ++L  I   D+
Sbjct: 120 QNQLRYQAITETQTELICRFDSDRILTFINDAYCHYFNRTKEELENS--SFLETIFNEDQ 177

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +    +LDS   +    + +E+RV        W     R + + NG +     +  DIT 
Sbjct: 178 EKVCQVLDSINPHNL-IVTHEYRVMNHQEDIRWHQWINRGIFDENGQLTEIQAVGRDITL 236

Query: 522 QKKSLEGILCN 532
            K++   +   
Sbjct: 237 LKEAEAKLQQL 247


>gi|187926918|ref|YP_001893263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665247|ref|YP_002983606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187728672|gb|ACD29836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867274|gb|ACS64934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 652

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 149/573 (26%), Positives = 256/573 (44%), Gaps = 35/573 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI---------RNWLPYIHIND 460
            V    + +      R      P  A +LGL    + G             +   IH  D
Sbjct: 75  MVNALTEGILVCGADRCVSYANPSAARLLGLPLDELVGRPLPTVVHAAVDEFETSIHETD 134

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG------------- 507
             +        +   + +L   F +   D +  W+     P+    G             
Sbjct: 135 WPDL-----DVLAEGQPQLNQIFGLHCLDGRTVWVSSNWTPLYTEGGHSTTAAPGAARQG 189

Query: 508 -DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +    DIT+ +++ + I   A  D LTG+ NR +  DRL   L L   +   R 
Sbjct: 190 ARPYSVLVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRN-RSRV 248

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           +VM +D+D++K +ND LG   GD +L  +  R+    +  D +ARL G+ F ++L S  +
Sbjct: 249 SVMFLDLDRFKNVNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLESL-D 307

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           ++     A  +  +I  P ++  +E+ +  SIG A           +L+ A+ AMY AK 
Sbjct: 308 AMGTRRVAERILSAIGAPFHIEGQELYLGVSIGIAVAPRDGDDPHTLLRKADAAMYLAKE 367

Query: 687 RGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG N+ ++F        S R  I+  L  A + +E Y  Y P + +    IVG+EALI+W
Sbjct: 368 RGRNNFQTFTSDLDDRVSRRFRIESGLRRASDRNEFYADYQPRVDVRSGRIVGVEALIRW 427

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +   +G +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ + 
Sbjct: 428 NSADFGRMMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQA 486

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L + ++  +S +      ++L  +E +++ +      LL  LR +G+SL LDDFG
Sbjct: 487 FSSGKLSDMVRRALSASGLPGDAVELEMTEGILIRDDPSLHALLTELRAMGVSLALDDFG 546

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P DT+K + S +       +R AI R+II MA+ +    +A+ +    
Sbjct: 547 TGYSSLSYLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMRTVAEGVESTG 606

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  L  +GCD  Q   +  PL   ++  L++E
Sbjct: 607 QLDFLREVGCDEFQGYLLTRPLEPGAVQNLVRE 639


>gi|196039412|ref|ZP_03106717.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196029572|gb|EDX68174.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 909

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 165/870 (18%), Positives = 346/870 (39%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274
            + +   + +         L  L+ +      +     ++       + L+      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQVLLTPRLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   I  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQIIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  + 
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|46201915|ref|ZP_00054102.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 833

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 137/596 (22%), Positives = 270/596 (45%), Gaps = 10/596 (1%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           L    + +     F  I H +     ++  + +  E  +  +    D++   D     + 
Sbjct: 237 LSLAAMELGGQRLFVAIGHDITLRKANEAELLNQREWLTTLINALPDLICFKDGKGRWLV 296

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRA 487
                  ++GLA     G     L  +  N ++   +    D         L YE  +  
Sbjct: 297 ANQFYLDLVGLAGVDYVGRTGPELARLSHNFQEFLTSAKETDERAWKEGKALSYEKTMET 356

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                    +   P+ +++G     + +  D+TE+K +   I   A  D+LT +PNR  F
Sbjct: 357 PSRGTKVFDMLKIPLFHADGKRRGLVLVGRDVTERKMTAARIQRLAHHDSLTDLPNRVLF 416

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL   L  +      +  +M +D+DK+K +ND LG  VGD +L ++ +R+   ++  D
Sbjct: 417 QERLRQSLAQAKRS-GWKLALMFLDLDKFKDVNDTLGHHVGDLLLRAVAKRLIRCVRETD 475

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL G+ F ++L + ++    +  A  +   I+ P  L E E+  + SIG   +    
Sbjct: 476 TVARLGGDEFAVLLTNLDDLEGASRVAETIIAGISDPFGLEEHEVRTSTSIGITIYPDDS 535

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
             + ++LKNA+LAM+ +K  G N+   +        R    ++ DL LA+   +L L Y 
Sbjct: 536 SDAEQLLKNADLAMFRSKAEGRNNYHFYVAQMDAEVRARKLVEHDLRLALGTEQLELHYQ 595

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++ +    IVG EAL++W+HP  G +   EF+ I E   +I  +  ++L R  +    W
Sbjct: 596 PLVEMSTRRIVGCEALLRWNHPTRGWMPPGEFIPIIERSDLIGPLGRWILHRACQQGREW 655

Query: 786 RDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +      P+ I +N++         +   +  ++ +T ++P +++L  +E + M N + +
Sbjct: 656 QKDGL-EPMKIAVNLSPAQFKQTQSIISMVADILDQTGFAPDQLQLEITEGIAMQNVDAT 714

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
             +L  LR +G+ +++DDFGT  S L+YL   P D +K + S +          A++++I
Sbjct: 715 IEVLQGLRAMGVLISIDDFGTGYSSLNYLKRFPVDKLKIDRSFVVDIGQHPDNAAVVQAI 774

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           + +  ++ T +  + I  +  +  L     D  Q  + +  +  +   +L++ + P
Sbjct: 775 VNLGHSLRTRVNVEGIETQEQLDFLQAHKVDEAQGFYFSKAVPADQFAELVRTKSP 830



 Score = 45.7 bits (107), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 21/178 (11%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              +    V  +      + Q  L     ++            V  + D +  +      
Sbjct: 121 AGLVQIFDVTSMASRETQLRQQALTMEALAENYRLSELHNRAIVDNTADAIVTFSEDGAI 180

Query: 428 VTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            T  P    I G A   + G     L    +  +           F+ +R      E   
Sbjct: 181 GTYNPSAERIFGYAPPEIVGKPIALLIPELVRPD----------PFLDHRT-----EVIG 225

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
                    + + +  M    G    ++ I +DIT +K +   +L    ++ LT + N
Sbjct: 226 VRKTRAHFPLELSLAAM--ELGGQRLFVAIGHDITLRKANEAELLNQ--REWLTTLIN 279


>gi|229142091|ref|ZP_04270616.1| Sensory box protein [Bacillus cereus BDRD-ST26]
 gi|228641380|gb|EEK97686.1| Sensory box protein [Bacillus cereus BDRD-ST26]
          Length = 735

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       + ++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++++G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|66044410|ref|YP_234251.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255117|gb|AAY36213.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 748

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 161/703 (22%), Positives = 300/703 (42%), Gaps = 62/703 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V         A         +IY  ++G+              +  + 
Sbjct: 61  AWLRMVSSYGDVVLVGQDSPANAIQTNSPGTTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL    V                    +  + +  ER  L    
Sbjct: 111 LSNSDGAMVLSAAQRYALQAQAV------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L      D    
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC---EDTSRA 221

Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              I+   + + R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K
Sbjct: 222 TLDIIREALSHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERK 280

Query: 524 ---------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                                      +  E +   AF D LT + NR   ++ LTT  +
Sbjct: 281 ESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHDELTSLFNRAYLMNELTTAFE 340

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
              +    R TV+ +D+D +K +ND +G   GD +L  +  R+   ++  D+LAR+ G+ 
Sbjct: 341 TRKSRYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTCVRSNDVLARIGGDE 399

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L+ ++        A  +   +   I +  ++I ++ SIG  S   S     E+L++
Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVSAGESHTKPEELLRD 459

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK +G      F  S      D +MI+  L  A+E+ +  + Y PI     E 
Sbjct: 460 ADVAMYSAKKQGRGRWSIFNTSMREAAIDTLMIQNALRQALEDKDFLVFYQPIYSGNCEH 519

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR + +   +
Sbjct: 520 LVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHKACSEVQAWRKEFSHLDL 579

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+    +L ++R++
Sbjct: 580 RLNVNVSGKELSHPGFVDRVTRIIASTGLPATQLQIEVTESVFLYQPDAIAEILRQIRQL 639

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G+ + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + +   
Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALNLD 699

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 700 ITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|229076562|ref|ZP_04209522.1| Sensory box protein [Bacillus cereus Rock4-18]
 gi|228706595|gb|EEL58808.1| Sensory box protein [Bacillus cereus Rock4-18]
          Length = 892

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 183/819 (22%), Positives = 333/819 (40%), Gaps = 70/819 (8%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
            + I L +  +     +L    A+ + ++ YI +  GF  K +   S   L   +   I 
Sbjct: 78  AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFAIKFIKHYSIRGLAQFSFDSIF 137

Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310
           +    I F   + L  + +H          G      L   +         Y     + I
Sbjct: 138 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 197

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
              T+  +  Y   F +  G+K       LI    ++ I    +   + K + ++     
Sbjct: 198 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 257

Query: 371 LVGGLVLIVI-------------------------------------------------L 381
                V  ++                                                  
Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 317

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q        +  +    +R         D V+  ++      +     ++    
Sbjct: 318 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGVFQQSNTACESLF--T 375

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +        + L +I   D D  +  L      R   L  E R +  +  ++++ I + P
Sbjct: 376 AYYCEVASYSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L TIL+ + T 
Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 492

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    VM +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L
Sbjct: 493 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +    A  A  +   +  P  + + E++VT SIG A +       +E++KNA+LAM
Sbjct: 552 PDMYSEKSAAFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADLAM 611

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G E
Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIEFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N
Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 730

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI ++
Sbjct: 731 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ 
Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 850

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  E   K L    CD+IQ    + P+    +  LL ++
Sbjct: 851 VETEEQWKFLYEQNCDHIQGFFFSKPVSSKDVWMLLHKK 889


>gi|78484511|ref|YP_390436.1| response regulator receiver/GGDEF/EAL domain-containing protein
           [Thiomicrospira crunogena XCL-2]
 gi|78362797|gb|ABB40762.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 697

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/601 (24%), Positives = 276/601 (45%), Gaps = 8/601 (1%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              +D+     A       I   +    +++ + +      + +   +   A   +    
Sbjct: 99  MGSIDHAFTSGATDFITKPINWSLLSQRVKYAINSSLIEDQLRTSQSQLMYAQKLAKLGY 158

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W+WD   D+VT T     + G+        +  +   I   D    +  +          
Sbjct: 159 WEWDTKADQVTGTGSAFELFGI-PNQADVTLEQFFSNIIPKDLPLIQQAIADASQGYND- 216

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +Q  FRV   DN    +        + +GDI R  G A DI+   K+   I   +  D L
Sbjct: 217 IQVSFRVLHHDNSLSHVDCLGEVSFDEHGDISRITGSAQDISRLHKAETLIDYQSSHDKL 276

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T + NR  F   L   +  +  +       +++DID++KKIND LG   GD +L ++ +R
Sbjct: 277 TDLANRSFFNKNLANFIKEA--NPKKYSATVILDIDRFKKINDNLGQENGDALLRTVAQR 334

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + ++ +  D +ARL  + F I++ +  ++ ++      +   I+   N+ ++E+ +T SI
Sbjct: 335 LKKVTREDDFVARLGSDEFAILIKNTEDAQELNLSLSRIFHDISKAFNVKDQELFITFSI 394

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVE 716
           G +        +SE++ +A +A   AK +GGN    ++  +++   +++M++ DL  A++
Sbjct: 395 GISIINQDGDQASELIAHANIARSQAKLKGGNQFLFYQAEMNAESKEQLMLENDLRKALD 454

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            +E+ + Y P I     +  G EAL++W HP  G IS   F+ +AE   MI  I  F+LE
Sbjct: 455 RNEIEVYYQPQIDGHSLKPYGAEALVRWKHPTEGIISPGIFIPMAESNGMIVDIGRFVLE 514

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              ++   W  +     + I +N++ +    + L + +Q ++  T      + L  +ES+
Sbjct: 515 NAIKEAEKWHAEGFDE-MRIAVNLSGRQFSSSNLIKEVQEVLQNTTLPAKYLDLEITESL 573

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKR 895
            M N + +  +L  L+ +G+SL++DDFGT  S L+YL   P D +K + S +    +++ 
Sbjct: 574 AMSNADHNISILKGLKAMGVSLSIDDFGTGYSSLAYLHSFPIDAIKIDRSFIDNLESQEG 633

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            AI+R+I+ MA ++   ++A+ I  E  +  L    CD  Q      P+      + LK 
Sbjct: 634 QAIVRTILAMADSLSLKVVAEGIEEEFHVTFLQNKNCDIFQGFMFGKPMPAGDFQQYLKS 693

Query: 956 R 956
           +
Sbjct: 694 Q 694


>gi|49481140|ref|YP_039292.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332696|gb|AAT63342.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 909

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 170/872 (19%), Positives = 347/872 (39%), Gaps = 38/872 (4%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   +    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTIVCVGTLSYFVGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFL-----SKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            T +    +V L Y   D  FL          L      +        L  +    ++ +
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLIIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
                +  +    T + +  + ++               +  +           +     
Sbjct: 221 --IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYI 278

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                ++ I    +     +   M       + + +++      L+  +        Q  
Sbjct: 279 SVVMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIE 338

Query: 391 LATGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           L T    +    ++ + +          D ++  D+  + +       T+LG  +  +  
Sbjct: 339 LRTEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLN 398

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               +   I+  D +                +  E R    +   +++ +   P+   + 
Sbjct: 399 QP--YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD- 453

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I     +  DITE K+  E I   A++D LT + NR++F   +   +  S         
Sbjct: 454 HISGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFA 512

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           VM +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N  
Sbjct: 513 VMFLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKR 572

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+R
Sbjct: 573 PDVKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNR 632

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W 
Sbjct: 633 GKNGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWK 692

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+ 
Sbjct: 693 HPLLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEF 751

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT
Sbjct: 752 QQDHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGT 811

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  
Sbjct: 812 GYSSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQ 871

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +K L R  C Y+Q  + + PL     +K L++
Sbjct: 872 LKFLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|78222177|ref|YP_383924.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
 gi|78193432|gb|ABB31199.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
          Length = 633

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 228/448 (50%), Gaps = 7/448 (1%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
               +  ++ E+ ++ E I   A+ D+LTG+PNR+ F DRL   L L+         VM 
Sbjct: 174 HAAMLEEEVAERSRAEERIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRHKR-PLAVMF 232

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLK 629
           +D+D++K IND LG AVGD +L+++ +R+    +   D +AR  G+ F I L + ++   
Sbjct: 233 LDLDRFKLINDTLGHAVGDRLLMAVAKRLRNCCRREGDTVARQGGDEFIINLSAISDVKD 292

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +      P  +   E+ +T SIG + +     +   ++KNA++AMY AK +G 
Sbjct: 293 AFTVAQKIIDVFRTPFVIDGYELFITTSIGISVYPHDGRSGDALVKNADVAMYRAKEQGR 352

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+ + F         +R+ ++ D+  A+E  E  L Y P + +   +I  +EAL++W HP
Sbjct: 353 NNCQLFAPEMNARAFERLSLENDMRRALERDEFVLHYQPKVNVEHGQIACMEALVRWQHP 412

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +  S F+ +AEE  +I  +  ++L    +   +W+D    P + + +N++ + L  
Sbjct: 413 SMGLVPPSRFIPLAEETGLIVPLGEWVLRTACQQNRAWQDA-GYPTMQVAVNLSPRQLRQ 471

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L E +  ++++T  +P  + +  +ES++M + E +     RL ++G+ +++DDFGT  
Sbjct: 472 GDLSETVARVLAETGLAPGWLVIEVTESILMDDAEETIRTFRRLDRMGVRISIDDFGTGY 531

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L YL   P  T+K + S +          AI  ++I MAK +   ++A+ +     ++
Sbjct: 532 SSLHYLKKFPVHTLKIDRSFVREIASNPDDEAIAGAVISMAKGLNLGVVAEGVETVEQME 591

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L  + C Y+Q    + P        +L
Sbjct: 592 VLRALNCRYMQGFLFSEPAPAEQFTPVL 619


>gi|254294194|ref|YP_003060217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hirschia baltica ATCC 49814]
 gi|254042725|gb|ACT59520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hirschia baltica ATCC 49814]
          Length = 785

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/737 (19%), Positives = 306/737 (41%), Gaps = 26/737 (3%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRW 278
               +    +    +        +   +  L         +      + +  + L   + 
Sbjct: 29  YRAFLGMAPVAAFGLTATGAFLSILHHNSSLGPIMFSWAYSAGVLAYVMIRSWQLSIQQP 88

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                                S +  ++ A +      ++ L     +    M  +  AV
Sbjct: 89  DKNFHTSQKFKKIGFWAAGIGSVW-GLLIAVLIMHDQTNLALVGAVAVGMLSMGSFVLAV 147

Query: 339 LLI--PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           L +    ++L  +   G   A++  +   +I P  +  +V++     +T    VL     
Sbjct: 148 LPVASLVFMLGILAGFGAGAALSGDVAFLVIVPLFLIFMVVMQRYAAWTFRNFVLQRLDR 207

Query: 397 SQGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           +  +    E  SL +      S D +WD D        +   A  +   +  +      +
Sbjct: 208 N-AVSESKEVISLLLHDFESQSSDWLWDTDENMLLGRVSQRFAEAVKRPAEVL--NSECF 264

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L +   + ++  + +  +   +R        R+   + +  W  I   P  N  G+   Y
Sbjct: 265 LHFFEEDSKEQLQELFLNQRSFR--DFVVPIRI---EGELRWWSISASPKRNCEGEFTGY 319

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            G+ +D+T+++ + + I   A  D LTG+ NR +F   L   ++   T       +  ID
Sbjct: 320 RGVCSDVTQERTAEKKIAYMAHFDALTGVHNRANFSTELEKAVERMHTQGK-PFALHCID 378

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +ND +G   GD +L  +  R+   +   DI+ RL G+ F ++ +  N++ +   
Sbjct: 379 LDNFKTVNDTMGHPAGDSLLKIVAHRLSMSISDGDIVGRLGGDEFMVLQMGCNDAEEAML 438

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            +  +  ++  P++L+   + V+ S+G +       TS E++++A+LA+Y AK  G    
Sbjct: 439 TSDMITDALLEPVSLMGSVLPVSGSVGTSFAPRDGETSKEIMQHADLALYAAKQDGRGCN 498

Query: 693 ESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F        +    ++  L  A++ +EL + Y P++ +    I G E+L++W   +  
Sbjct: 499 RMFEPKMDLDAKRRTQLEIGLRRALQENELEMHYQPLMDVRSGTIKGYESLLRWRRGEND 558

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +  +EF+ IAE+  +I  +  +++     +  +W +      I + IN++   + +  L
Sbjct: 559 VLLPTEFIEIAEDTGLIVPLGEWIIRTAIAEAATWPE-----NISVAINLSPTQMKNPSL 613

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + + ++     P+R++   +ESV++   E +   L  LR +G+ + LDDFGT  S L
Sbjct: 614 ISTVISALANNAMDPARVEFEITESVLLEESEVNIKTLHVLRDLGVKIALDDFGTGFSSL 673

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL   PFD +K +   +T    +    AI+R+++ +A+++     A+ I  +  +  L 
Sbjct: 674 NYLRAFPFDKIKIDKCFVTEMETRDDCRAIIRAVMGLARDLGMKTTAEGIENQTHVDLLK 733

Query: 929 RMGCDYIQDSHVASPLG 945
             GCDY+Q    + P+ 
Sbjct: 734 AEGCDYMQGFLFSRPIP 750


>gi|172039622|ref|YP_001806123.1| hypothetical protein cce_4709 [Cyanothece sp. ATCC 51142]
 gi|171701076|gb|ACB54057.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 661

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 159/576 (27%), Positives = 276/576 (47%), Gaps = 13/576 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIR 450
                 Q +  + ER    +    D+VW         +       T+ G         + 
Sbjct: 83  ELRLNEQALQLNQERLHSILGSIDDVVWSIVPQTSQILYLNHATETVYGRPIADFLDNLN 142

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   I+ +D+          + Y+ G    E+R+   +++ HW+ +R R + +  G+ +
Sbjct: 143 LWQEIIYADDQQRVEES--QQLLYKTGIQDIEYRILWPNDEIHWIRVRSRLIKDDQGNPI 200

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R  G+  +ITE K+  + +L +A  DNLTG+PNR   +DR+   L     D N R  ++ 
Sbjct: 201 RIDGLTTEITEYKQIKDQLLHDALHDNLTGLPNRTLLMDRIEQGLKRCQRDKNRRFALLF 260

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K IND LG   GD +L+ L+ R    L+  D L+RL G+ F I+L + +N  + 
Sbjct: 261 LDLDGFKLINDSLGHLTGDQLLIILSHRFSRCLRAEDTLSRLGGDEFVILLENLSNIDEA 320

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-----ITSSEMLKNAELAMYHAK 685
              A  +   +  PI L   EI ++ SIG                +E+L++A+ AMY AK
Sbjct: 321 IAIADRIHNILKEPILLQNEEIFISVSIGIVLGGEQSVYNNLDQVAELLRDADTAMYRAK 380

Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +G    + F+ S        +    +L  A+E  E  + Y PII L  + I G EAL++
Sbjct: 381 AKGPGTSKVFKPSMHTHVMKRLQVANELQRAIERQEFIVYYQPIISLDSDRIDGFEALVR 440

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIAS 802
           W H + G I+ ++F+ IAEE   I  I+ ++L      +  W+ Q      + + +N++S
Sbjct: 441 WQHQEKGLIAPTDFIPIAEETEAILKIDQWVLRHACTQLGLWQQQFPNLGSLTMSVNLSS 500

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K L    L E +  ++++T    S +K+  +ES VM   + S  +L ++++  I L LDD
Sbjct: 501 KHLAHPSLIEVLDEILAETGLGGSSLKVEITESFVMEQSKTSLDILEQIKQRKIELCLDD 560

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL    F+ +K + S +      + R  I+++I+ +A  +   ++A+ +  
Sbjct: 561 FGTGYSSLSYLDCFSFNILKIDRSFIKRLVAEQDRCEIIKAIVDLAITLNMQVVAEGVET 620

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  K L  + C Y Q      PL   +I +LL+++
Sbjct: 621 NVQRKRLKALNCGYGQGYGFFPPLDSQNITRLLEQQ 656


>gi|300697792|ref|YP_003748453.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
 gi|299074516|emb|CBJ54067.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
          Length = 914

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/581 (24%), Positives = 270/581 (46%), Gaps = 13/581 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LAV    + V    +    +        IL +  G + G  
Sbjct: 329 AIQKDTTERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRPGQLVGRN 388

Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505
           R       +  + +D     L S +  + G   L   + +     +  W  + I P+   
Sbjct: 389 RFDMMQRVVDEHGKDVALDALPSKLVRQSGEPILGRIYGLLLKTGELIWARMNIIPIR-R 447

Query: 506 NGD--ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +G+      +    DIT+ K++ + +   A  D LTG+ NR  F+  L + ++ +  D++
Sbjct: 448 HGEAAPTSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDES 506

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++  
Sbjct: 507 RELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQ 566

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                +IA  A  +  ++  P + +     +  SIG A +    I+ +++L++A+ AMY 
Sbjct: 567 RVEGKRIAQLAEHLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYR 626

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N  + +        +    ++  L  A +NSEL LVY P   L    IVG EAL
Sbjct: 627 AKQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEAL 686

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+  K G +S  EF+ +AEE  +I  I  ++L R     ++W          + +N++
Sbjct: 687 LRWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLS 745

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++     ++   ++  +++T   P+ +++  +ES++MG  +  R +   L   GI +++D
Sbjct: 746 ARQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISID 805

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P   VK + S + G       +A+  +I+ MA+ +  T+ A+ + 
Sbjct: 806 DFGTGYSSLSYLQRFPISNVKIDRSFILGIPSDPDSVALTEAIVAMARALGMTVTAEGVE 865

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
               ++ L + GC  IQ  ++  P+      +LL+    +V
Sbjct: 866 DADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLAVV 906


>gi|124515412|gb|EAY56922.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 703

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 131/578 (22%), Positives = 263/578 (45%), Gaps = 9/578 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++ +         +  + E+  + +   GD V   D         P    + G    
Sbjct: 114 MVAVRDISRRKQLIHDLHLEKEQWFVTLKSIGDAVVTTDEHGRVTYVNPVAEHLTGWKVE 173

Query: 444 SMHGPIRN-WLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              G   +     ++   R+     +D + +      L     + +   +   +     P
Sbjct: 174 EADGHPVSKVFRIVNEYSREPAENPVDRALLEGTIVGLANHTLLLSRSGEEFSIEDSAAP 233

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + ++NG+I   I +  D+TE++K  + I   A  D+LT +PNR  F DRL+  +  +   
Sbjct: 234 IQDNNGEIRGCIIVFRDVTEKRKLEQRIAYQANFDSLTDLPNRHLFQDRLSRAVGQAHRT 293

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +L   ++ +D+D +K IND +G   GD VLV L +R+  +++  D +AR+ G+ F +IL
Sbjct: 294 GSL-VALLYLDVDYFKNINDRMGHPYGDRVLVELGKRLKTVVRETDTIARIGGDEFAVIL 352

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              ++  +       +    AMP  +      +T SIG A +      ++ +++NA++A+
Sbjct: 353 CDLHDRSEAMVLGRRLMIEAAMPFRIDGSRADLTVSIGVALYPEDGTDATTLIRNADIAL 412

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y  K  G N++  F     R  +  +  + +L  A++ +  YL Y PI+ L     VG+E
Sbjct: 413 YQVKREGRNNIAFFSREMNRFVQSTLKTESELREALDKNRFYLAYQPIVHLGSALAVGVE 472

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W H +       EF+ IAEE+ +I  +  ++L    R+   W  Q       + +N
Sbjct: 473 ALLRWRH-RGKVRFPEEFVPIAEEMGLILPLGQWILREAIREAGVWIRQGINLG-RLTVN 530

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ K +      + +++ + +    PS +++  +E  +M     +   L R+R++G+ ++
Sbjct: 531 VSVKQIHSEGFSDFLESTLRENGLPPSVLEIEITERTLMFRDHHTVSTLNRIREMGVKVS 590

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           +DDFG   S L+Y+   P +T+K + S +    +     AI+R+I+ MA+++   ++A+ 
Sbjct: 591 IDDFGIGYSSLNYIRNFPVNTLKIDRSFLAEMLDNHYDRAIVRAILAMAQSLSIDVVAEG 650

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      + L   GC   Q    + P+    I +  + 
Sbjct: 651 VERLEQARFLQENGCLMAQGFFYSEPVSPEEIFRYFRR 688



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 6/126 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +   G+ +   D+ R  +        + G     + G   +++      DR+++  
Sbjct: 10  HQFILQSMGEAILAVDLSRQILWINVGFTRLFGYDPEEVVGRKPDFIY----ADRNDYEE 65

Query: 467 I--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L   +     +  YE R    D Q  W       + N  GD + ++    DI+ +K+
Sbjct: 66  QGRLRYNLEAPSVQTPYEMRYVKKDGQVFWGEAWGAAVHNRKGDRIGFMVAVRDISRRKQ 125

Query: 525 SLEGIL 530
            +  + 
Sbjct: 126 LIHDLH 131


>gi|91777085|ref|YP_546841.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91711072|gb|ABE51000.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
          Length = 951

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 152/617 (24%), Positives = 297/617 (48%), Gaps = 16/617 (2%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAVL 412
             + +TKR        A    +V+   ++G     + +       + +          + 
Sbjct: 342 SVLQVTKRNGEKAWIEAYKSPMVVDGKVMGTVGFFRDITDIKQNEEKLIQRERELQSLID 401

Query: 413 GSGDIVWDWDIVRDRVTTT-PDIATILGLASGSMHGPIRNWLPYIHI--NDRDNFRTILD 469
            + D +  +D+   R+    P +  I G+ SG + G   +     +        +   + 
Sbjct: 402 NTPDTIIRYDLNARRLYVNTPKLKRI-GIESGRLIGTTPSE----YPGGEAYMKYEEKIR 456

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +         E   +A +    ++ +RI P     G ++  + +  DITE  +  E I
Sbjct: 457 GVINSATPDF-LELHGKADNGNTWFIHVRIVPEFGEQGQVIGVLAVERDITELMEYRERI 515

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+PNR  F DR+  +L  ++  +  R  +M++D+D++K++ND LG   GD
Sbjct: 516 HYLAYYDALTGLPNRTLFADRVNQVLADASWHEQ-RFGLMMLDLDRFKEVNDTLGHQAGD 574

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           D+LV++ +R+   ++  D +ARLSG+ F I+L    N   +A  A  +   IA P  + +
Sbjct: 575 DLLVAVAQRLNASVRSYDTIARLSGDEFAILLPELRNPDDLATIARKINDEIAKPFLIHD 634

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707
           +E+ ++ SIG A +       + + K+A++AMYHAK+ G N+ + +     S  S+ +M+
Sbjct: 635 KELFISTSIGIAIYPDDGDDRATLFKSADVAMYHAKNYGRNNYQFYSRELGSKASEYIML 694

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +  A++N+E  L Y P + LM  EIVG EAL++W +P+ G +    F+ +AEE  +I
Sbjct: 695 GASIRQALKNAEFELFYQPQVDLMSGEIVGAEALLRWRNPQLGVVMPDRFIKVAEESGLI 754

Query: 768 KAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
             I  ++L      ++          P+ + +N++S+  L N+L   ++ ++++T   P 
Sbjct: 755 VEIGEWVLREACSAVVCLNRYRPDDHPLSMAVNLSSRQFLYNDLLASVKDILAETGCKPE 814

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +KL  +ES+++ + +     L   +++GI++++DDF T  S +SYLG  P   VK + S
Sbjct: 815 WLKLEITESLLLEDSQEIISTLSTFKEMGITISIDDFCTGYSAMSYLGQFPISQVKIDRS 874

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      + ++ ++ +II +A  +   ++A+ +  +     L   GC   Q      P+
Sbjct: 875 FVRDIAAKQDKLELITAIIRIAHALRLELVAEGVESKQQANLLKIQGCTIAQGYFFGKPM 934

Query: 945 GFNSILKLLKERFPLVK 961
               +  +L E   L++
Sbjct: 935 RLRHLKLILAEEHDLMQ 951



 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 54/177 (30%), Gaps = 8/177 (4%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           ++  +  + +         V         + + + A       +     +    V+ S D
Sbjct: 93  SLRNQAGDTVPVEIQSNYFVDADQAYCVLLGRDLTARFDMLDKLQEQELQYRQLVMNSPD 152

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNW-LPYIHINDRDNFRTILDSFVG 473
           I   +D    R+  +     + G+ +    G  P   W  P +   D +      +    
Sbjct: 153 IFIRYDQDCRRIFLSDGYEAVFGVPAAEALGRKPTEVWGRPMMRPEDFEARLR--EVMRS 210

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                ++ E+     D  +    +   P  N  G+I   + I  DI+  ++    + 
Sbjct: 211 GEEQEIELEWV---GDEHYVCQSLHAVPERNVKGEIKGVLTITRDISHIRRVERELR 264


>gi|196045448|ref|ZP_03112679.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|218906527|ref|YP_002454361.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|225867330|ref|YP_002752708.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228917957|ref|ZP_04081493.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228936633|ref|ZP_04099427.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229124852|ref|ZP_04254030.1| Sensory box protein [Bacillus cereus 95/8201]
 gi|229187574|ref|ZP_04314714.1| Sensory box protein [Bacillus cereus BGSC 6E1]
 gi|196023655|gb|EDX62331.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|218536626|gb|ACK89024.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|225788718|gb|ACO28935.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228595941|gb|EEK53621.1| Sensory box protein [Bacillus cereus BGSC 6E1]
 gi|228658643|gb|EEL14305.1| Sensory box protein [Bacillus cereus 95/8201]
 gi|228823068|gb|EEM68906.1| Sensory box protein [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228841754|gb|EEM86865.1| Sensory box protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 735

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|300117811|ref|ZP_07055578.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
 gi|298724675|gb|EFI65350.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
          Length = 909

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 165/870 (18%), Positives = 345/870 (39%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274
            T +   + +         L  L+ +      +     ++       + L+      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKR-PFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  + 
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|237746692|ref|ZP_04577172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacter formigenes HOxBLS]
 gi|229378043|gb|EEO28134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacter formigenes HOxBLS]
          Length = 1077

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 149/561 (26%), Positives = 260/561 (46%), Gaps = 12/561 (2%)

Query: 402  SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             D E+  LA      S + +   +   + +   P    I G     + G     L     
Sbjct: 516  EDEEKLQLAALVYKNSSEAILITNAKNEILAVNPAFERITGYTPAEIMGKDPKILSS-GR 574

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D+  ++ + D+    ++G  + E   R  + + +   + I  + N +G +  Y+ ++ND
Sbjct: 575  QDKAFYKAMWDAL--GKKGFWRGELWNRKKNGEVYLAWLTINVVYNEDGSVRYYVELSND 632

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             TE+K++ + I   A  D LTG+PNR+  LDRL   +         +  ++ +D+D +K 
Sbjct: 633  FTEKKEAEDMIWRQANFDFLTGLPNRRMLLDRLQQEIVKVNQSGK-KLALLFLDLDNFKD 691

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND LG  +GD +LV +  R+ E ++  D ++RL G+ F +IL   ++          M 
Sbjct: 692  VNDTLGHDMGDLLLVDVAGRLNECVREIDTVSRLGGDEFAVILTELSDLRIAETVTQCML 751

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +S+A P  L      ++ASIG   +         + KNA+ A+Y AK  G N +  F  S
Sbjct: 752  RSLAQPYRLDGEIAYLSASIGMTVYPDDGTGIETLQKNADQALYAAKQAGRNRMSYFTAS 811

Query: 699  SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  +R+ +  D+ +AVE  +  ++Y PI+ L   +I   EALI+W HP  G +S +E
Sbjct: 812  MQAAAQNRIRLANDMRIAVEEHQFEMLYQPIVELGTGKIHKAEALIRWHHPLRGIVSPAE 871

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  I+ +    +AR++  WR++   P   I  NI+               
Sbjct: 872  FISIAEETGLILTISDWAFREVAREVGRWRERY-YPGFQISFNISPALFQSKTDYSDWFD 930

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +++     S I +  +E V++ +  +    L    + G+ + LDDFGT  S LSYL   
Sbjct: 931  ELARLKAPGSSIVMEITEGVLLVSNWQVIAQLTEFHRHGMEIALDDFGTGYSSLSYLKKF 990

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + + +       K +A+  ++I MA  ++  +IA+ +  E     L   GCDY
Sbjct: 991  EIDYLKIDQAFVKNIENEPKDMALCEAMIVMAHKLDMKVIAEGVQNERQRWLLAGAGCDY 1050

Query: 935  IQDSHVASPLGFNSILKLLKE 955
             Q    + PL       LL++
Sbjct: 1051 GQGYLFSEPLAAAEFENLLEK 1071



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 6/159 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +++ +   V +        +  +     R         D++W  +     +T        
Sbjct: 372 LLLNLEKRVEERTEDLNKVNAVLAQSEARLKSVFDNIPDLIWLKNTAGVYLTCNRAFENF 431

Query: 438 LGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             L    + G     L      DR  D  R      +   +  +  ++       +  + 
Sbjct: 432 FDLEENRIIGKTDAGL----PTDRQADMLRPEGSRIIEEGKPEVMEQWVTNVQTGKRVFF 487

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +   P+   +G ++  +GIA DIT +K+  E +   A 
Sbjct: 488 DVIKAPVKTPDGRLIGVLGIARDITRRKEDEEKLQLAAL 526


>gi|213971646|ref|ZP_03399754.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301385615|ref|ZP_07234033.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061517|ref|ZP_07253058.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302134619|ref|ZP_07260609.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213923602|gb|EEB57189.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 643

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 153/666 (22%), Positives = 286/666 (42%), Gaps = 40/666 (6%)

Query: 303 YPMVTASIARITLASIVLYYTYFI-IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
                A    +    + + +     I   +   E A L     +  + W +   + I   
Sbjct: 3   DYSRGALRTAVLYGLLSILWFMACDILLPLFIDEPARLAFCHQMAGYAWALLSAVTI--F 60

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIV 418
           +  D ++  + G                        +    D +R  LA      + + V
Sbjct: 61  VARDRLRKIIGGEAHF--------------------ERQQDDYDRLRLAEAVFDSTREGV 100

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
              D     V        I G  +  + G     +    H    + +R +  S +    G
Sbjct: 101 LVSDAQGRIVHVNRAFVDITGYQAEEVLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VG 156

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
           +   E   R    + +     IR +   +G +  ++ + +DIT  K+S   +      D 
Sbjct: 157 QWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQLKHFVAVFSDITAIKRSERELAQLIHFDA 216

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PNR    DR++  L  +         +++ID+D +K IND LG  VGDDVL ++  
Sbjct: 217 LTDLPNRLLLTDRISQALTSARASKRG-CALLLIDLDHFKNINDSLGHNVGDDVLKAVAE 275

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+  L      LAR  G+ F +++ + +  ++ A  A  + + +  P  +   ++ VTAS
Sbjct: 276 RLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQVSEVLKAPFVIAAHQLFVTAS 335

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV 715
           +G + +     ++ ++L+NA+ A++ AK  G +    +     +    RV +  +L  A+
Sbjct: 336 MGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALYTEELTAHAQQRVQLAGELRQAI 395

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  EL + Y P+  L+   + G+EAL++W HP  G +S  EF+ IAE+  +I  I+ ++L
Sbjct: 396 EQGELRVFYQPVHDLITRSVCGVEALVRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVL 455

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               R + +W  +      F+ +N++S+     +L   +  ++  T   P+ ++L  +ES
Sbjct: 456 NTACRQMRAWLTEGVSIA-FVAVNVSSRLFSRGDLDRQVAQVLHDTGLDPAFLELEVTES 514

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            VM +PE++   L RLR +G+SL +DDFGT  S L  L  +P   +K +   + G     
Sbjct: 515 AVMEDPEQAIEQLHRLRDLGLSLAIDDFGTGYSSLLRLKRMPVQKLKIDQGFVAGLPGDG 574

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             IAI+R++I +  ++   ++A+ I        L   GC   Q    A P+  + ++   
Sbjct: 575 DDIAIVRAVIALGASLGMRVLAEGIEQASQAAFLLENGCQLGQGYWFARPMAAH-LIDW- 632

Query: 954 KERFPL 959
               P+
Sbjct: 633 -SHAPV 637


>gi|119900138|ref|YP_935351.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119672551|emb|CAL96465.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 689

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 142/586 (24%), Positives = 267/586 (45%), Gaps = 12/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           G+          V++ +       + +    ++    +  +   V+            P+
Sbjct: 103 GIEWEGRRARLAVVEDLTEPRRHMRALEESEQQYRATMGAALVGVYVLQ-DFRFRYVNPE 161

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           +    G ++  +   +   L  +   +R+  R  L        G   +E      D    
Sbjct: 162 LCRYFGYSADELVDKL-GPLDLVVAEEREYVREQLARRARGEPGH-PFELTGLRRDGSHF 219

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             ++   P +   G     +G   D++E K + + I   A+ D LTG+PNR    DR   
Sbjct: 220 PFMVFGAPSTWR-GQPAS-VGTVFDLSEIKAAEDRIRQLAYFDPLTGLPNRSLLEDRAGQ 277

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +L  +  D     T+M ID+D++K +ND LG  +GD +L    +R+ + ++  D +ARL 
Sbjct: 278 VLVRAGRDRRA-ATLMFIDLDRFKTVNDSLGHLMGDQLLRLAGQRLRDSVRLSDTVARLG 336

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I+L  +  +      A  + +  A P +L +RE+T++ SIG A +         +
Sbjct: 337 GDEF-IVLAPDTGAEGAVRLAEKILEVFAAPFDLDDRELTISPSIGIARYPDDGKDFPAL 395

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L++A++AMY AK  G N    F +         ++++  L  A+++ +L LVY P++ + 
Sbjct: 396 LQSADIAMYQAKREGRNGFRMFSIEMNAPILESLLLETQLRRALDHGQLSLVYQPMVDIA 455

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              IVG EAL++W HP+ G IS   F+ +AEE  +I  I  ++LE+    +  WR     
Sbjct: 456 SGRIVGAEALLRWQHPQHGEISPVRFIPVAEESGLILPIGEWVLEQALGQVQRWRAA-GH 514

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P + + +N+++       +   +  L+       S ++L  +ESV+M + ER+   +  L
Sbjct: 515 PDLVMAVNLSALQFERLNISNTVLRLLDHYGLPGSALELELTESVLMEDAERAVAAMLNL 574

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
              G+ L++DDFGT  S L+YL  +P   +K + S +          ++ R+I+ +A+++
Sbjct: 575 ADRGVRLSVDDFGTGYSSLAYLTRLPLAKLKIDRSFVRNIPSDASARSVARTILDLARSL 634

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +  E  +  L    CD  Q    + P+   +   LL+ 
Sbjct: 635 ALEVIAEGVENEAQLLLLREWCCDQAQGYLYSRPVPARAFEALLRA 680


>gi|327193248|gb|EGE60154.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli CNPAF512]
          Length = 843

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 142/582 (24%), Positives = 255/582 (43%), Gaps = 11/582 (1%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
                     + +         I S   +    +    D++W  D+    V        +
Sbjct: 262 AAATTLLAFSRDITERKQAEDAINSVRTQLLSVLQTMPDMIWVKDMNGAYVLCNHTFERM 321

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWM 495
            GLA   + G     L  I    R  F    D         +    E+ +     Q   +
Sbjct: 322 TGLAEADVVGKTDFDLFDI---GRARFFRESDKAAIKAGECILSDEEWVISQQSGQSVLL 378

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             R  P++++ G ++  +G+A D+TE   S + I   AF D LT +PNR  F DRL  ++
Sbjct: 379 ETRKVPITDAEGAVVGVLGVARDVTELNASRQKIHQMAFYDPLTALPNRSLFNDRLRQMI 438

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             + +    R  VM+IDID +K +ND +G  VGD++L     R+   ++  D +ARL G+
Sbjct: 439 TSAVSRGQ-RAGVMLIDIDHFKVVNDTMGHPVGDELLCQAAARLNASVRDYDTVARLGGD 497

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L        +   A  +         L  +E+ V+ S+G A +      +++++K
Sbjct: 498 EFAILLPDLRPGDDLGRVASDILDKFRENFLLDGKEVFVSCSVGIALYPDDSAEANDLVK 557

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A+ AMY AK  G N    +         DR+ ++ DL  A+E  EL L Y P + L   
Sbjct: 558 YADSAMYLAKRSGRNSFRFYSKDLTASVEDRMRLELDLRRAIERGELELHYQPKVLLDSG 617

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--- 790
            ++G EAL++W H + G I    F+ +AEE  +I  +  ++L    +    +  ++    
Sbjct: 618 AMIGSEALLRWRHHEMGMIPPLRFIPVAEETGLIVDLGRWVLREACQTAAEFNAKSRVES 677

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P  + IN++ K      L   +  ++ +T      +++  +ES+++   + +   L  
Sbjct: 678 RSPHKVAINLSVKQFQSAGLVRSIGEILDETGCRAEWVEIEITESLLLDQKDETLQTLSD 737

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910
           LR +G S+ +DDFGT  S L+YL   P DT+K + S +  +  +   ++++I+ +A+ + 
Sbjct: 738 LRSMGFSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSTDRRNEELVKAILSIARCLG 797

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             ++A+ +        L   GC   Q    +  L    I+ L
Sbjct: 798 QEVVAEGVETAEQAAFLAANGCGSAQGFLYSKALPKPEIMAL 839



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +       + +    E     +    D++++ D     +        +L     
Sbjct: 141 IGAVVDITEHKRAERELKKALEFAEGIITAIPDVLFEVDEDGRYLQVWTRSPELLAQQRE 200

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G        +  +  D     L +         +   R+   + +  W  + +    
Sbjct: 201 MLLGKSVG--DVLAPDQADIAMEALRTAGKEGVAYGRC-IRISLPNGETRWFELSVARRP 257

Query: 504 NSNG-DILRYIGIANDITEQKKSLE 527
           N++       +  + DITE+K++ +
Sbjct: 258 NADPAAATTLLAFSRDITERKQAED 282



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 4/141 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           H  A     QG   D E    A+LG     V+  D +   V        + G     + G
Sbjct: 19  HGHAAQPAHQGETIDREALLDALLGPFPLPVFYKDPLGRYVGCNKAFEDLFGQGREEIIG 78

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                L     +         +  +  R G    + ++  A+     ++     +S  NG
Sbjct: 79  KTDLELN---PDLLAELHLAGNEALLERVGGRYSKSKIITANGGVRDVVWNKAVLSGGNG 135

Query: 508 DILRYIGIANDITEQKKSLEG 528
           D    IG   DITE K++   
Sbjct: 136 DAAGLIGAVVDITEHKRAERE 156


>gi|260773786|ref|ZP_05882701.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio metschnikovii CIP 69.14]
 gi|260610747|gb|EEX35951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio metschnikovii CIP 69.14]
          Length = 919

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/565 (25%), Positives = 260/565 (46%), Gaps = 21/565 (3%)

Query: 399 GIFSDGERQSLAVL--GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
            +    E   +A     S + +   D  +  +        I G     + G  I+     
Sbjct: 347 AMQHMVENLKIAATVFESAEGMVVTDEKKHILRVNQAFTDITGYQPKDVLGHHIKVIRSG 406

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIRPMSNSNGDILRYI 513
            H     +F   L+  +  + G  Q E   +  + + +  W +I    +S+   +I+ Y+
Sbjct: 407 RH---NQSFYDELELQLKTQ-GSWQGEIFNKRKNGEEYLQWTMITA-VISDHEDEIINYV 461

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT++K +   I   AF D LTG+PNRQ  ++RL +    S  +      ++ +D+
Sbjct: 462 ITLIDITQRKAAESKIKQLAFYDQLTGLPNRQLLMERLESARLNSQRNGQY-GAILYLDL 520

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD- 632
           D +K +ND  G   GD  L  +++R+ + ++  D +AR+ G+ F IIL   ++ L IA  
Sbjct: 521 DDFKTLNDTRGHDTGDKFLTLVSQRLLDCVRRTDTVARIGGDEFVIILEQLDSDLDIASK 580

Query: 633 ----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                   +  +++ P  +   E   T SIG   +        E+LK+A+LAMY AK  G
Sbjct: 581 RADLLCRKILDTLSKPYYIDNIEHFSTLSIGVTLFLGETKGIDELLKHADLAMYQAKGAG 640

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F         +   +  D+  A+  +E  L Y P +   D ++ G EALI+W H
Sbjct: 641 RNTHRFFNPEMQAKVLEHAAMANDIRHALTRNEFTLYYQPQVTH-DGQLTGAEALIRWQH 699

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK G IS  EF+ IAEE  +I  +  ++L++  + +  W++      + + INI++K   
Sbjct: 700 PKQGTISPIEFIPIAEETGLILPLGEWVLDQACQVLAVWQNSPLTDSLVLAINISAKQFH 759

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                + +   + +   +P R+KL  +ES++  + E +   + +L+K G+S +LDDFGT 
Sbjct: 760 QTGFVQQVLEALQRYRANPDRLKLELTESMLHEDLEDTITKMSQLKKYGVSFSLDDFGTG 819

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL  +P D +K + S +           I R+I+ +AK++   +IA+ +  +   
Sbjct: 820 YSSLNYLKRLPLDQLKIDKSFVRDLLTNSHDADIARTIVSLAKSMNLAVIAEGVETQEQR 879

Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949
             L   GC   Q    + P+   + 
Sbjct: 880 LALASYGCLDFQGYLFSRPVPLEAF 904


>gi|28867537|ref|NP_790156.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850772|gb|AAO53851.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 643

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 149/633 (23%), Positives = 284/633 (44%), Gaps = 20/633 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      I L + + +               VL+  +  F     ++ ++   
Sbjct: 14  LYGLLSILWFMACDILLPLFVDEPARLAFCHQMAGYAWVLLSAVTIFVARDRLRKIIGGE 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              +    D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  AHFERQQDDYDRLRLAEAVFDSTREGVLVSDAQGRIVHVNRAFVDITGYQAEEVLGFNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + +R +  S +    G+   E   R    + +     IR +   +G + 
Sbjct: 134 TFKSGRH--GPEFYRQMYHSLLS--VGQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQLK 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S   +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSERELAQLIHFDALTDLPNRLLLTDRISQALTSARASKRG-CALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  L      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLKAVAERLKGLCGNETTLARPGGDEFALLVKNCSQVVRA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  + + +  P  +   ++ VTAS+G + +     ++ ++L+NA+ A++ AK  G +
Sbjct: 309 AALAQQVSEVLKAPFVIAAHQLFVTASMGISLYPGDAQSAEQLLRNADSALFKAKSEGRD 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  A+E  EL + Y P+  L+   + G+EAL++W HP 
Sbjct: 369 CYALYTEELTAHAQQRVQLAGELRQAIEQGELRVFYQPVHDLITRSVCGVEALVRWQHPT 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L    R + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQNGLIADIDAWVLNTACRQMRAWLTE-GVPIAFVAVNVSSRLFSRG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +  ++      P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRQVAQVLHDIGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G       IAI+R++I +  ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDGDDIAIVRAVIALGASLGMRVLAEGIEQASQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           L   GC   Q    A P+  + ++       P+
Sbjct: 608 LLENGCQLGQGYWFARPMAAH-LIDW--SHAPV 637


>gi|295690973|ref|YP_003594666.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295432876|gb|ADG12048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter segnis ATCC 21756]
          Length = 789

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 160/719 (22%), Positives = 303/719 (42%), Gaps = 31/719 (4%)

Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA---------CIAILFCMSFYYPMVTAS 309
             +  + ++  +  L    W A     + + I            A L  + +    +   
Sbjct: 51  SLIIWACLVVAYALLGLRGWVASQRRRSANQIVSARGVRRITWQAGLLGVLWAALPIMTM 110

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
            A       +      +I   +     A+L +PA  + +   + L         +D I  
Sbjct: 111 PAEQGFEGSMPMMVASVIAGMIGCGGFALLTLPAAAIAYSTPMALGALWALSTSHDPILY 170

Query: 370 ALVGGLVLIVILIGFTVIQHVL---ATGYFSQGIFSDGERQSLAV----LGSGDIVWDWD 422
           AL G L+    ++  + + H          ++ + +  +  SL +     G+ D +W+ D
Sbjct: 171 ALGGLLIFCHAVVVASCLSHARIFVDRLLAAEELDTQRQVVSLLLSDFEEGASDWLWEVD 230

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                   +  +    G+    + G   + L        D     L +    ++      
Sbjct: 231 CQGRMTYVSDRMVAAAGVERSKLLGQPMSDLCG-AAEGPDGPVAALSALFVEQKTFRDVV 289

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             +   + Q HW  +  +P+ + +G    + G+  DIT+ ++    I   A  D LT +P
Sbjct: 290 VSIEVGE-QTHWWSLSAKPVHDLDGHFTGFRGVGADITQAREDQARISRLAHYDVLTQLP 348

Query: 543 NRQSFLDRLTTILDLSATDDNLR----PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           NR SFL  L+         D         V+ +D+D +K +ND LG  +GDD+LV  + R
Sbjct: 349 NRLSFLQALSRAWTEHGRGDREPRGAGCAVLCLDLDHFKGVNDSLGHPIGDDLLVQASAR 408

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + +    ++ARL G+ F +++     +  + + A  +  S++ P ++    + + AS+
Sbjct: 409 LRDCVGEMGLVARLGGDEFAVVVAPSPGAEALGELARDIVDSLSRPYDVRGNHVLIGASV 468

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716
           G A           +LKNA+LA+Y AK  G      F  S       R  ++ DL  A+E
Sbjct: 469 GIAEAPLHADDPDGLLKNADLALYQAKGDGRGAYRFFETSMDLWIQQRRELEMDLREALE 528

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N EL L + P++     +I G EAL++W HP+ G ++ +EF+  AE+  +I  I  ++L 
Sbjct: 529 NDELKLFFQPLMGRDGSQITGFEALLRWQHPRRGLVAPNEFVECAEQWGLIGKIGEWVLA 588

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R   +W       P+ + +N++       +L   ++  +     +PSR++L  +E +
Sbjct: 589 EACRTAATWPS-----PMTVAVNLSPHQFASGDLVAQVRKALKAARLAPSRLELEITEGL 643

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           ++ +   +   L +L+K+G+ + +DDFGT  S LSYL   PFD +K + S +    +   
Sbjct: 644 LLQDSATTLDQLAQLKKLGVKIAMDDFGTGYSSLSYLWRFPFDKIKIDRSFVAEMQDNAA 703

Query: 897 A--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ILR+I  + + +   + A+ +      K L+ M CD+ Q      P+    I   L
Sbjct: 704 IADILRTIALLGQTLNLEVTAEGVETADQAKLLSEMRCDHFQGFLYGRPMPVGDIPSFL 762


>gi|87119415|ref|ZP_01075312.1| hypothetical protein MED121_05740 [Marinomonas sp. MED121]
 gi|86164891|gb|EAQ66159.1| hypothetical protein MED121_05740 [Marinomonas sp. MED121]
          Length = 938

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 152/642 (23%), Positives = 287/642 (44%), Gaps = 19/642 (2%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
             +  + GY  + +L  A   + +  +    ++   L    +   L   +   V L    
Sbjct: 287 WGWTVLGGYNNSDILFDAQSQLNMLKLNQQKSMQHLLIEFSLLSCLSLIITFGVALWLRK 346

Query: 386 VIQHVLATGYFSQGIF----SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                         +     ++ E  +     + + +   D     +T       I G +
Sbjct: 347 AFMSYHTHSQKQHELLLQNKTELELSARVFDSTSEGIMITDEFNQIITCNSSFCRITGYS 406

Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              + G     +   +   D D +  +  +     +G  Q E   +          + I 
Sbjct: 407 KEEIIGLTPNTFASGL--TDPDIYSDMWHAL--TTKGLWQGEVINQHKQGHLFPEWLSIN 462

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD---- 556
              +  G  + YIG   DI+++K++   +   A  D+LT +PNR+ F +++  I++    
Sbjct: 463 VYKDKQGKAINYIGTIVDISKRKQAENTLQHLADYDSLTDLPNRRFFKEQVDHIIEIDKQ 522

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
              T+   +  ++ +D+D +K IND LG + GD VL  +  R+ E      I++RL G+ 
Sbjct: 523 RKPTEPINKFALLFLDLDYFKFINDSLGHSAGDKVLKIIASRLLEHKDKNTIISRLGGDE 582

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L    +   +  F   + ++I  P+N+L R + VT SIG   +      ++ +LKN
Sbjct: 583 FVIVLQDIASEKAVKQFCFELMQNIEKPMNILGRSLIVTPSIGATLYPKDGNRTNILLKN 642

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ A+Y AK  G N+V+ F   ++     R+ ++ DL  A+  ++  + Y P + L  ++
Sbjct: 643 ADAALYRAKENGRNNVQFFTANLNRDALKRLSLENDLRRALNRNQFEIYYQPQVNLNTKQ 702

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           ++G EALI+W HP  G +S  EF+ IAEE  +I  I  ++L    +   +W ++     I
Sbjct: 703 VIGCEALIRWHHPTKGFVSPIEFIPIAEETGIINEIGEWILFEACQQAANWCNEYGRE-I 761

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I IN++++   D+ L   +   ++++      + L  +ES+++ +PE+    L +LR+ 
Sbjct: 762 DIAINLSARQF-DDTLVSTVLKALNQSQLPSHCLTLEITESILVQDPEQVIHTLTQLRQS 820

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            I + LDDFGT  S LSYL   P D +K + + +          AI+ S++ +AK+ + T
Sbjct: 821 SIKVALDDFGTGFSSLSYLKRFPLDKLKIDRAFVKDLPNNTDDGAIIASVLAVAKHFQLT 880

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            IA+ I        L  + C   Q      PL   ++ + L+
Sbjct: 881 TIAEGIENTDQEALLEALNCTQGQGYFYDKPLTAYAMAQRLR 922


>gi|23015361|ref|ZP_00055139.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 916

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/663 (22%), Positives = 271/663 (40%), Gaps = 19/663 (2%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           L  +           A   L   ++     I    +  Y R  +L P   L       + 
Sbjct: 258 LMVVEQPLFSALKLPAGAALIVALVLLFAGIGAWFLMRYSRHAILAPIDALA----DAVR 313

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                 +       +      L +     T              +    E+  L +  + 
Sbjct: 314 DVEAGDMSRRAPVRSSDEIGALAMAFNSMTG-----RVADLLNDLGDSEEKFRLVMESAS 368

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGY 474
           D +   D      T       + G  +  + G     L   H     D+    L +    
Sbjct: 369 DALVVIDAQGCITTWNRAATRMFGYQAAEVIGRNVGLLMPSHLRGRHDDVLAHLRTETDG 428

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R      E   +  D     + + +   S        + GI  DI+ +K++   I   A 
Sbjct: 429 RLQTEPREQPAQRKDGTLFPVEVTLAGFSFKGQR--YFSGIMRDISARKEAESNIRFLAR 486

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR    ++L  IL  +         ++ ID+D +K +ND+LG + GD +LV 
Sbjct: 487 HDALTGLANRVVLREKLEEILPETGARQ--LHCLLFIDLDNFKVVNDILGHSFGDRLLVE 544

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+  +    +I+ R  G+ F ++     +  K A+ A  +   ++    +  + I V
Sbjct: 545 VAGRLRSIEGGRNIVCRHGGDEFILLAPDIQSREKAAELAERVLAVMSDSFAIDAQAIEV 604

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLC 712
             SIG +        +  +++ A++AMY AK +G    + F   +    ++R  +++ L 
Sbjct: 605 GCSIGISMAPDDGDKAETLIRKADIAMYKAKEKGRLGFQFFTGAMDRQMAERRQLEKSLR 664

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             + + ++++   P +RL +  + G EAL +W  P  G +  S F+ +AEE  +I  I  
Sbjct: 665 RGLRDGDVFIHLQPKVRLAEGRVTGFEALARWQSPDHGMVPPSRFIPVAEECGLIGGIGE 724

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L      +  WR    +  + + +N+++  L +  L   + +L+ +    P+ ++L  
Sbjct: 725 LVLRLTMETLAGWRAHGRVL-LPVAVNLSAGQLGNPGLAGEIDSLLREFGLPPTVLELEL 783

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES++MG+ ++ R +L RL+ +GI L++DDFGT  S LSYL   P D +K + S +T   
Sbjct: 784 TESMLMGDADQVRAILFRLKDLGIKLSIDDFGTGYSSLSYLKRFPVDVLKIDKSFVTDLP 843

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  AI  +II MAK +   ++A+ +  E     L+  GCD+ Q    A P+      
Sbjct: 844 GDPEGEAICLAIINMAKALSLDVVAEGVETEAQSSFLSDNGCDFAQGFFFARPVSVEEAQ 903

Query: 951 KLL 953
             L
Sbjct: 904 DYL 906


>gi|301056816|ref|YP_003795027.1| hypothetical protein BACI_c53430 [Bacillus anthracis CI]
 gi|300378985|gb|ADK07889.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 892

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L   +     
Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 409

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 410 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG  +GD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSNKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|253995496|ref|YP_003047560.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982175|gb|ACT47033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 739

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 154/583 (26%), Positives = 262/583 (44%), Gaps = 15/583 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F ++  + A     + +    ER    V    +++         +          G    
Sbjct: 152 FVLVTDISAIKEAEKVLRQSEERFRSVVQDQTEVISRLRADGTYLFVNDVYCRFFGKTEQ 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M G    W P ++  D       L + +      +  E RV +     HWM    R + 
Sbjct: 212 EMIGS--TWKPVVYAEDLQRVVDEL-AMLSSSNPVVMIENRVLSGTGDVHWMQFSNRGIF 268

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +     +  DI+++K++ E +   A++D LTG+ NR+  LDRL   L  SA    
Sbjct: 269 DEYGQLTEIQSVGRDISDRKRAEEEVQKLAYKDPLTGLSNRRLMLDRLRIALATSARSMQ 328

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+DK+K IND  G A GD +LV + +RI   ++  D ++R  G+ F +++  
Sbjct: 329 Y-GALLFLDLDKFKVINDTQGHADGDLLLVEVAKRITACVREIDTVSRQGGDEFVVLVER 387

Query: 624 ENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
                   S  +A  A  +R ++A P  +    I  ++SIG + +        E++K A+
Sbjct: 388 LGEGLEEASRTVAKIAETIRLTLAEPYQINNAHIHSSSSIGISLFCGHDQDVDELIKRAD 447

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N    F         V   ++ DL  A+   +  L Y   +   + + +
Sbjct: 448 MAMYQAKDGGRNRTRFFDPQMQELVEVRATLESDLHNALATDQFELHYQLQVNHEN-KPI 506

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS + F+ +AEE  +I  I  ++L+   R I  W   A M  + +
Sbjct: 507 GAEALIRWVHPQRGMISPAHFIPVAEESALILNIGDWVLDEACRQIAVWSTNAKMCDLVL 566

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI-G 855
            +NI+++        + + A I K    PSR+KL  +ESV + +          LR+  G
Sbjct: 567 AVNISAQQFKQAHFVDQVIAAIHKHGIDPSRLKLELTESVALDDITDVIAKKNLLRQKVG 626

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           ++L+LDDFGT  S LSYL  +P D +K + S +   T       ++++II MA+N    +
Sbjct: 627 VTLSLDDFGTGFSSLSYLKRLPLDQIKIDQSFVRDITTDKSDAVMVKTIIDMAQNFSLNV 686

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           IA+ +  E  +  L    C   Q    + PL       L+++ 
Sbjct: 687 IAEGVETEAQLAFLKHHECKAYQGYLFSKPLPIEQFDALMQDY 729


>gi|229064952|ref|ZP_04200250.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228716253|gb|EEL67965.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 909

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 180/870 (20%), Positives = 350/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             +    + +   S  F   L              +  R+   D   F   ++P     F
Sbjct: 52  SYIFHFSNIKHGLSRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+       L +   I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+LI++      Y +
Sbjct: 161 FTTSYIDMFVQLTYPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + +L               +  +     +     +       
Sbjct: 221 IKYFQPEHSMFTVAPLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL-- 391
              ++ I    +   I  IGL +     L    +       L+L  +     + + +   
Sbjct: 281 LMLIVFILVENVFAPIIVIGLMVTFAFVLIRHTLVRRQNKILLLAQMQFSLELEKQIELR 340

Query: 392 --ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   ++  D +   T        +   +  E R    +   +++ +   P+      I
Sbjct: 401 --YYSLMYEQDLEEIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A+ D LT + NR+SF  +L   +  +         VM
Sbjct: 456 SGAYLMIKDITESKQQQEQINFLAYHDTLTELANRRSFHQQLEKAIARAKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++        
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  S+  P  +  + + ++ SIG A +  +      +L++A++AMY  K++G 
Sbjct: 575 VQKIADMIVLSMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E +LVY P + +   +I+G EALI+W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS  EF+ I EE   +  +  ++L    R +  W+       + + +N+++K+   
Sbjct: 695 LLGDISPCEFIPIVEETPQVIPLGHWVLRESCRQLKIWQS-FGYTNLKMSVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N+L E +  ++      P  + L  +E + M + + + L L +L++ GI  ++DDFGT  
Sbjct: 754 NQLIENISRILKDVKIDPKDVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 874 FLKKNNCKYMQGYYFSKPLTSKQFIKFLQK 903


>gi|218438586|ref|YP_002376915.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
 gi|218171314|gb|ACK70047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cyanothece sp. PCC 7424]
          Length = 1015

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 142/567 (25%), Positives = 259/567 (45%), Gaps = 13/567 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                  + +        LA       +   D              + G       G + +
Sbjct: 449  ERKQAEEALRQQANLLDLAYEA----ILVRDGNNVITFWNQGAEQLYGWKKSQALGQVSH 504

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +   + +      D+ +    G  + E      D     +  R   + +  G I  
Sbjct: 505  ---ILLQTEFNLSSPHFDAILR-LTGHWEGELTHTRQDGTKIIVESRQVLVQDDRGQIKG 560

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  DITE+K +   +  NA  D LT +PNR   ++R+   +  +    +    ++ I
Sbjct: 561  ILEVNRDITERKLAQFQLEHNALHDALTELPNRLLLMERIQAAIQRAKRKPHYHFALLFI 620

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K IND LG  VGD +LV++  R+   ++  D +ARL G+ F I+L          
Sbjct: 621  DLDRFKTINDTLGHLVGDHLLVAIATRLQHCVRSGDTVARLGGDEFIILLDDLLEESDAF 680

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +   I  P+ +  ++I  +ASIG         + +++L+NA+LAMY AK +G + 
Sbjct: 681  PITERILGRIKEPLVINNQQIQTSASIGIVFNRDGNESETDLLRNADLAMYSAKEQGKSR 740

Query: 692  VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
               F   +         I+ +L  A++  E  L Y PI  L  + +VG EALI+W HP  
Sbjct: 741  YAVFNPTMHLRAHTLWEIENNLRTALDGQEFLLHYQPIFSLTTQTLVGFEALIRWRHPVR 800

Query: 750  GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDN 808
            G IS  +F+ +AEE  +I  I  ++L+   R ++ W++        F+ IN++S+ L   
Sbjct: 801  GLISPMDFIPVAEETGLIVPIGEWVLQEACRQLLHWQELNPGAKCCFMSINLSSRQLESG 860

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                 +  ++ +T  S   +KL  +E+++M N E +  LL  L+   I +++DDFGT  S
Sbjct: 861  NFIAVIDQILQQTPLSAKNLKLEITETLLMKNLEAASALLLELKNRAIGVSIDDFGTGYS 920

Query: 869  LLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             LSYL ++P D++K + S +    + R ++  +++II +A  +   +IA+ I  +  + +
Sbjct: 921  SLSYLCHLPVDSLKIDRSFVAKMDKGRESLQVIQAIISLAHQLNLEVIAEGIETQDHLTQ 980

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKLL 953
            L  + C+Y Q   ++ PL      +L+
Sbjct: 981  LHHLKCEYGQGYFLSKPLDSEKATQLI 1007



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/383 (12%), Positives = 108/383 (28%), Gaps = 59/383 (15%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
               +     +    +   W +     +    L + V    G +    A + I + S+L 
Sbjct: 84  LALIVFLLGLLTSSQYLFGWNLGIDQLLFKEELKQSVLSKPGRMAPETALNYIFMGSALW 143

Query: 267 IFLFMYLHWNR-------WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV 319
           +     + +                +    I  +  L  ++    +   +     L  + 
Sbjct: 144 VLAIKPVRFRLVQLLISITSIISIQVLVGYIYQVKPLVGLASNNQVAIHTSILFLLLCVG 203

Query: 320 LY------YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           +           +I     G   A  L+PA  ++ +    L                ++G
Sbjct: 204 ILCANPCKGWMRLIASNSAGGIIARSLLPAAFILPLGLGWLVEGSGWMDVAFGQSFHVIG 263

Query: 374 GLVLIVILIGFTVI---QHVLATGYFSQGIFSD--------------------------G 404
            +V+ + LI +      +  L      + + S                            
Sbjct: 264 NIVVFIGLILYCAKELYRMDLQRHRAEEALRSAYDDLDLKVQERTSKLFQAYETLAAEIE 323

Query: 405 ER-------------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           ER                 +  +   ++  D+    +     +  ++GL    M G    
Sbjct: 324 ERKRAEAAQKASQKNLQTFIDNTSAAIYLKDLQGKFLLVNRQLEKLVGLKREQMIGKTDG 383

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +   D  +   + D  V      L  E ++   + Q    +    P+ + NG +  
Sbjct: 384 D---VFPEDIADAFVVNDRQVLQAGESLSLEEQII-VERQLRTYLSVKFPLYDPNGLLYG 439

Query: 512 YIGIANDITEQKKSLEGILCNAF 534
             GI+ DITE+K++ E +   A 
Sbjct: 440 IGGISTDITERKQAEEALRQQAN 462


>gi|89092239|ref|ZP_01165193.1| hypothetical protein MED92_05488 [Oceanospirillum sp. MED92]
 gi|89083327|gb|EAR62545.1| hypothetical protein MED92_05488 [Oceanospirillum sp. MED92]
          Length = 955

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 141/564 (25%), Positives = 255/564 (45%), Gaps = 12/564 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457
              +   + +     +G+ V   D     V        I G     + G     L    H
Sbjct: 395 EAENRLNQAAAVFRSTGEGVAITDQNGTIVDVNEAFTKITGFDRDEVIGKNTRILQSGKH 454

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIA 516
             D   +  + +    +  G  + E   RA     +  I+ I  +    G     Y+G+ 
Sbjct: 455 --DIAFYENMWEQIQKH--GHWRGEVWNRAKSGTIYPEILTISAIDFKKGQQPSGYVGVF 510

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT  K++   +   A  D LT +PNR  F +RL   L +S      +  V+ +D+D++
Sbjct: 511 ADITSLKETEARLDHLAHYDALTELPNRLLFRERLIHSLLMSER-KKTKVAVLFLDLDRF 569

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD +L  +  R+  +++  D + R+SG+ F +IL    +   +      
Sbjct: 570 KNINDTLGHGVGDILLAEIASRLRHVVRMGDTVGRISGDEFCLILEDIQDVTDVVPIVEK 629

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +    +  I +    + ++ASIG A    +   +  +L  ++ AMY AK  G N  + + 
Sbjct: 630 ILSVFSQTIQINSHMLQISASIGVAISPDNSNDADALLSFSDSAMYEAKEAGRNTYKFYT 689

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    +   ++  L  A+E S+ ++ Y P +R+ D  +VG+EAL++W HP+ G I  
Sbjct: 690 AEMTQQALEHSFVQSALRDALEQSQFFVTYQPQLRIKDYSMVGVEALVRWQHPERGLIPP 749

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   +I+ +  ++L       + W ++       I +N+++  L D    E +
Sbjct: 750 DSFIPIAENSGLIRELGAWILRTACEQGVQWLNEQVNFG-RIYVNVSATQLHDESFTEAV 808

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +T +   ++ L  +ES +M +P+ +  +L   ++IGI L +DDFGT  S LSYL 
Sbjct: 809 IMCLKETGFPAEKLGLEVTESFIMKDPQHAINVLSSFKEIGIELAIDDFGTGYSSLSYLK 868

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +         +AI  ++I M K +   +IA+ +  +I    L    C
Sbjct: 869 QLPIDKLKIDQSFIRDIPDDPNDMAIAEAVIAMGKALNLEVIAEGVESQIQADFLLDKEC 928

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             +Q    A PL  ++  +  K+R
Sbjct: 929 TEVQGYLYAHPLTADAFSEWEKQR 952



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R    V     ++  +    + +        + G  S  + G   N+L  
Sbjct: 140 AEKALRESEQRYRGVVEDFPIMICTYKPGGEIIFVNQSYCKLFGRTSEDLVGS--NFLDL 197

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I   DR    + +   +   +     E RV    +   W     R + N  G+I  Y  I
Sbjct: 198 IPEGDRPALISNISG-LNTSKPTFVNEHRVILPGDNIGWQRWTNRAIFNRQGEIESYQSI 256

Query: 516 ANDITEQ 522
             DIT++
Sbjct: 257 GEDITQR 263



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMH-GPIRNWL 453
            + + S   + S  +     + +     R+   +  +     I G  + S+      ++ 
Sbjct: 267 ERALESSEAQLSTLIGNLPGVAFQCLNNRNWTMLYLSDRCEEIFGYTAESLIKSRYCSYA 326

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             I    R+     + + +  +    +  ++++ +  +  WM  + R +S  +  +    
Sbjct: 327 QLIEPGYREYVWAAVQNSLKTQT-PYKVLYKLKHSSGESRWMEEQGRGVSTDSTGLT-IE 384

Query: 514 GIANDITEQKKSLEGILCNA 533
           G   D+TE+ ++   +   A
Sbjct: 385 GYIEDVTERIEAENRLNQAA 404



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 8/153 (5%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +     F + + +  +   +        +   +     ++      +  G       
Sbjct: 1   MAQMTNDSKFLEKLKNSSDLFEIVFDHQFQFMAILEPDGRVISVNQVALSQQGYTREDFV 60

Query: 447 GPI----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G       +W      +    ++  L +    R      +    A D            +
Sbjct: 61  GRYFWESASWRHL--PDWEAIWKKRLKAAYENRSPIFTDDV-YEAHDGSIRHADAVTIAL 117

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            +S+G +  Y+  A D T+ K   E  L  + Q
Sbjct: 118 FDSDGKLNGYLIQAIDKTD-KAIAEKALRESEQ 149


>gi|167648073|ref|YP_001685736.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167350503|gb|ABZ73238.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 692

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 141/554 (25%), Positives = 252/554 (45%), Gaps = 14/554 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D +R  +A+     IV ++D+    +  +     +             + L  +H +DR+
Sbjct: 145 DQQRLRMALELDDLIVREYDLRTGEIHFSGTAPDL-----ERWCQFKDDPLEVVHPDDRE 199

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               ++ +           EFR+   D    W+    +    ++G   R + +  DIT++
Sbjct: 200 KMAELVRARKDGEAQVF--EFRLNRDDGVETWVRSVGKRFLGADGKPERLVNLFKDITDR 257

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E +   AF+D LTG+PNR  F  +    +D S     L   +++ID+D +K IND 
Sbjct: 258 RRQTEAVENLAFKDPLTGLPNRAYFNRKFQEAVDASEIMGEL-FGLIMIDVDHFKDINDT 316

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L  L   +    +  D +ARL G+ F +IL   ++   +     A++  + 
Sbjct: 317 LGHDAGDALLKRLAEMLHAAFRSGDTVARLGGDEFAVILRGLHSEADMMRPVNALQDLLR 376

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            PI    R  +V+ASIG A         S M+KNA++A+Y AK  G N    F  +   S
Sbjct: 377 RPIEHGGRSFSVSASIGAALHGDLDADPSHMIKNADIALYRAKDEGRNRSVVFTPAMRSS 436

Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               I+   D+  A+   E  L Y P++ +    + G EAL++WDHP+ G ++   FM  
Sbjct: 437 LEQRIELLRDVRAAITAREFVLYYQPVVDIASNSVSGFEALMRWDHPEQGVLTPDRFMCA 496

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  +   +    LE   + +  W DQ       + +NI++       L E +Q  +++
Sbjct: 497 FEDQDLSLKLGDLALEGALKQMRDWIDQGVEFG-RVAVNISAAQFRSGRLAEEVQDRLAR 555

Query: 821 TLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 R+ +  +E+V MG   E     +  L K G+ + LDDFGT  + L+ L   P D
Sbjct: 556 WGVPCDRLTIEVTENVYMGWGSEMVSDTVRALHKAGVMIALDDFGTGYASLANLRQFPID 615

Query: 880 TVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +K + S +  +  +  AI++++I +  ++   ++A+ +  +  +  L   GCD IQ  H
Sbjct: 616 RLKIDKSFVQNT--EDAAIVKAVITLGSSMGMKVVAEGVEDQAQLDALAGYGCDQIQGYH 673

Query: 940 VASPLGFNSILKLL 953
            + P+    +   L
Sbjct: 674 FSRPMPAARVPGYL 687


>gi|52140213|ref|YP_086617.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51973682|gb|AAU15232.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 892

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 181/843 (21%), Positives = 342/843 (40%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIIQYIFLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHA-KVGYITFSGIACIA 294
           GF  K +   S   L   +   I +    I F   + L  + +    +      G     
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDVSNFRMLTIDTWVLIGYFIAQ 173

Query: 295 ILFCMS--------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
            L   +         Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 174 SLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L      R  
Sbjct: 354 VFSLNMYGIFQQSNKACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQLTKEGRPQ 411

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L  E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 412 TL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG  VGD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGVGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVSAKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 708 HTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELRPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|118480340|ref|YP_897491.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|118419565|gb|ABK87984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
          Length = 909

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 173/870 (19%), Positives = 353/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEELPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  FL   +NL    L +        L S+L+++      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  + 
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|212636403|ref|YP_002312928.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557887|gb|ACJ30341.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 1032

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 153/557 (27%), Positives = 256/557 (45%), Gaps = 15/557 (2%)

Query: 404  GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             E   LA      S + +   D     +TT      I G +   +       L       
Sbjct: 452  EESLKLAASVYNNSSEAMSVQDEAGVIITTNSAFTDITGYSEDEIKQQNIQVLQCK---- 507

Query: 461  RDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            R+N+       +     GR Q E  +R  + +   + + I  + +S     R + + +DI
Sbjct: 508  RNNYSVYEQISLSVEETGRWQGEMWLRRKNGEELVVWLTINTLFDSEAQTERRVALFSDI 567

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++K++ + I   A  D LTG+PNR+  LD L + +  S   +     +M +D+D +K++
Sbjct: 568  TDKKQAEQIIWKQANYDPLTGLPNRRMLLDYLGSEILKSDRREK-HFALMFLDLDYFKEV 626

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG  +GD +L    +R+   ++  D++ARL G+ F ++L    +   +   A  +  
Sbjct: 627  NDTLGHDMGDLLLTEAAKRLKSCIRDSDVVARLGGDEFTVVLSGITDIKGVDKVAQNILN 686

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +A P +L E    ++ASIG   +     +   +LK+A+ AMY AK +G N    F  S 
Sbjct: 687  RLAEPFSLGEETSYISASIGITLYPDDASSIEGLLKHADQAMYAAKDQGRNRFHYFTPSM 746

Query: 700  FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             R+   R+ + +DL LAV N E  L Y PI+ L  +  V  EALI+W HPK G +S  EF
Sbjct: 747  QRNAKYRMRLIQDLRLAVTNQEFELYYQPIVCLTGDPSVKAEALIRWHHPKRGLVSPIEF 806

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQA 816
            + +AEE  +I  I  ++ ++ AR    WRD+  +  + I IN +     D  E  +   A
Sbjct: 807  IAVAEETGLIVEIGNWVFQQAARQCALWRDRFGIE-VQISINKSPVQFRDEGESLDSWVA 865

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+     S + I +  +E +++ + +     L + R  G+ ++LDDFGT  S L+YL   
Sbjct: 866  LLKTLNLSRNSICVEITEGLLLDSNQAIYSKLEQYRNAGMQISLDDFGTGYSSLAYLKKF 925

Query: 877  PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K + S             +  +II MA  +   +IA+ +      + L   GCDY
Sbjct: 926  DIDFLKIDQSFTRNLDSNSDDFTLCEAIIVMAHKLGMKVIAEGVETAYQRQVLADAGCDY 985

Query: 935  IQDSHVASPLGFNSILK 951
             Q    + P+       
Sbjct: 986  GQGYLFSRPVTAEEFEA 1002



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    + +  +       + +  E+ +L +  S    WDWDIV ++V      A +LG  
Sbjct: 307 LVIVGLLNRSSQKQAEMAMLASQEQLALVLGSSELGFWDWDIVNNKVERNELSANLLGCD 366

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +++   + W   IH NDR      +D  +     + + E+R+ A   +  W++   + 
Sbjct: 367 VTTLNENPKLWTRAIHPNDRVKVLRSIDEHLSGVSEQHKIEYRMYAHTGEIRWILDSGKI 426

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  + N   LR  G+ +DIT+ K+  E +   A
Sbjct: 427 VSRDENNKPLRMCGVHSDITDSKRVEESLKLAA 459



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/339 (10%), Positives = 100/339 (29%), Gaps = 33/339 (9%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFM-------- 271
              + +    + +   F+           L  +WR      +    I  +          
Sbjct: 5   LFFSLIQNAALLLAMVFVYDAFPRSHKRELDVLWRVGIGALVGVISISVMLSPWEYTTGV 64

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           +         +  + F GI  +  +     +        A   + +I+       ++   
Sbjct: 65  FFDSRTVILGISGMFFGGIPTLVAVAISGLFRLSEGGVAAWSGIGTIMTSGLVGYLWGKY 124

Query: 332 K----GYERAV-----LLIPAWILIFIWFIG---LWMAITKRLDNDIIQPALVGGLVLIV 379
           +    G  R             + +    +    + +++ K++    +    +   +L +
Sbjct: 125 RKGDIGDIRFRELLIFGFSLHILALLWGLVLPFDVALSLLKQITLPFLIIFPITTALLGM 184

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L     IQ           +F                +   D+    +   P++  +L 
Sbjct: 185 LLSRRIEIQRDQKIKLQDHLLFKSH------FQAGSMGIAITDVDHQWIKVNPNLCQMLQ 238

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   +   +   L   H +D + +       +       + + R+ A+D+   +  + +
Sbjct: 239 YSEPELLELLWADLL--HHSDFNLYSHYYADMLAGETDEFELDIRLIASDDSIVYTHMTV 296

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
               N +   L  +G+  + + QK++   +   A Q+ L
Sbjct: 297 ACQRNQDKVELVIVGLL-NRSSQKQA--EMAMLASQEQL 332


>gi|30265372|ref|NP_847749.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47530915|ref|YP_022264.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188183|ref|YP_031436.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|30260050|gb|AAP29235.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47506063|gb|AAT34739.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182110|gb|AAT57486.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
          Length = 892

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 181/843 (21%), Positives = 344/843 (40%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNAGIKPSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGKVEEGASALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L   +     
Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDPKDHDLLQKALQ--LTKEGS 409

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 410 PQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ +    N    VM +D+D++KKIND LG  +GD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLDRFKKINDRLGHGIGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 528 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIKDEELSITPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|83311017|ref|YP_421281.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945858|dbj|BAE50722.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 962

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 164/696 (23%), Positives = 285/696 (40%), Gaps = 42/696 (6%)

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
             I  +G A IA +     + P+          A++       +++  ++   R +    
Sbjct: 276 RRIESTGWAVIATIPTSVAFAPIRRLEFEIYQDAALASVIIAVLLWLFVRRQLRPLEHAA 335

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
             +                    +    + GG  +  +L  F      +      Q +  
Sbjct: 336 GMLNAMATG-----------SRPLSPLPVEGGPEIRQMLDSFNKFHERIKAQ--KQSLRD 382

Query: 403 DGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHI 458
           + E+  LA     G+ + +   D     V+       + G     + G   N L    H 
Sbjct: 383 NAEQLQLAASVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYELEELVGRNPNILKSGRHD 442

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D   F   +   +    G    E   R  + + +   + I  + ++ G I R + IA+D
Sbjct: 443 SD---FYAEMWRSITA-TGNWSGEVWNRRKNGEVYPERLTISTIYDAKGQIQRRVAIASD 498

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITEQKK+ E I   A  D LTG+PNR+ FLD L   L  + +  ++   V++ID+D++K+
Sbjct: 499 ITEQKKAEEIIWHQANHDLLTGLPNRRRFLDLLRKDLARADSLPDMVVGVLLIDLDRFKE 558

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG A+GD +L+ + RRI   L   D++  L  + F + +I + ++ ++     A+R
Sbjct: 559 VNDTLGHAIGDQLLLEVARRIRSCLSEKDVIGHLGADEFIVSMIDDLSTTRLEAAVAAIR 618

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             IA P       + +TASIG  ++ +      E+L+N + A+  AK+ G +    F  S
Sbjct: 619 MVIAEPFRSGSDTLHLTASIGITAYPTDGGDMEELLRNVDQAVREAKNGGRDRSCCFTES 678

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R+ +  DL  A+   +  + Y PII +    IV  EAL++W HP+ G +S + 
Sbjct: 679 MREAGQTRLQLANDLREALSEGQFEVYYQPIIDMPSRAIVKAEALLRWRHPERGFVSPTI 738

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-----------------PIFILIN 799
           F+ IAEE  +I  I  ++  + A       D                         I +N
Sbjct: 739 FIPIAEETGLICDIGNWVFRQAAATARRLCDSCRYVVGGICRKDDIAGPSTPCRFQIAVN 798

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            + +              + +   SP  I +  +E +++G        L + R  G+ + 
Sbjct: 799 KSPRQFFSGFSHLEWAEHLRELNISPQCISIEVTEGLLLGQHAEVMERLTKFRAAGMQIA 858

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S +SYL     D +K + S +          AI  +II MA  +   ++A+ 
Sbjct: 859 LDDFGTGYSAMSYLKRFDIDYIKIDQSFVRDMTVDSSDRAIAEAIIAMAHRLGMKVVAEG 918

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I  E     L   GCD+ Q    A P+  +    L+
Sbjct: 919 IETEEQYALLAAAGCDFGQGYLFAKPMPVDQFEALV 954


>gi|289207865|ref|YP_003459931.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
 gi|288943496|gb|ADC71195.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
          Length = 1301

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/627 (23%), Positives = 278/627 (44%), Gaps = 21/627 (3%)

Query: 341  IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
            +    L+              +  D ++     G     +     ++   L      +  
Sbjct: 680  VQTRALLLAPLYVRGE-YRGFVGLDRVRQGRTWGAADEHM---ARIVAANLGAALERRRA 735

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIN 459
             +   R +     + D +   D+    V   P    I G +     G    +L    H  
Sbjct: 736  LTGLRRLAAVFQSTRDGILITDLSARIVAVNPAFTEISGFSEHDALGRNPRFLKSGRH-- 793

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            D + +R +  +      G  Q E   R    + H   + +  + +  G+   Y G+  D+
Sbjct: 794  DAEFYREMWATL--GATGHWQGEVWNRRYTGETHPQWLSLDVVRDEGGEPQYYAGVLTDL 851

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            +  K+S   +   A  D+LT +PNR      L   L+ +   +     V+ +D+D++K +
Sbjct: 852  SALKRSQNELEYLAQHDSLTDLPNRSQLQTLLGRALERA-RAERRGLAVLCLDLDRFKTL 910

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG +VGD VL+ + RR+ ++L+ PD+L RL G+ F  +L S +      + A A+ +
Sbjct: 911  NDSLGHSVGDRVLLEVARRLADVLESPDLLGRLGGDEFLAVLESADTHELAEERARALLE 970

Query: 640  SIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  L   + + V ASIG + + +   T  +++++A+ AMYHAK  G      +   
Sbjct: 971  VLQRPFVLDDGQVVYVNASIGVSRFPADGDTVVDLIQHADAAMYHAKALGRETWSFYTED 1030

Query: 699  --SFRSDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 ++R+ ++  L  A   EN EL + + P +RL+D    G+EAL++W      +I  
Sbjct: 1031 LTQAAAERLDLENRLRHALNQENDELAVHFQPQVRLVDGRFTGVEALVRWRTGSGESIRP 1090

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ IAEE  ++  +  ++L    R      DQ   P + + +N++   L    L E +
Sbjct: 1091 DRFIPIAEETGLVVPLGEWVLREACRQGRELLDQV-SPDLVMSVNLSPVQLRRGNLVEQV 1149

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +A++ +T +   +++   +E+ +M   +++   L  L+ +G+ + +DDFGT  S L+ L 
Sbjct: 1150 RAILGETGFPARQLEFEITETGLMQQGDQAVTRLKALKSLGVRVAIDDFGTGYSSLAVLQ 1209

Query: 875  YIPFDTVKFNGSLMTG---STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
              P D +K + S + G     E+     I  +II MA+N++  +IA+ +  E   + L  
Sbjct: 1210 TFPLDVLKIDRSFVDGVDRMDEEGTDRLIASTIIAMARNLQLEVIAEGVENEAQARFLIE 1269

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKER 956
             GC++ Q    +  L    +L+    R
Sbjct: 1270 HGCEFGQGYLYSPALPPEQLLEWAARR 1296



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +   R    +  +G++ +  D     V   P  + I G       G    
Sbjct: 261 RLRRERAALAASERRYREVIDQAGNVFFHLDQQGRWVFANPAWSEITGFVLEQTLGRP-- 318

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + ++   DR     ++   +     R   E R+++ +    W  +R+R   +       
Sbjct: 319 LVDFVVAEDRGRVGELVREVLETGETRGIGEVRLQSREGGIRWCELRLRARQSERDQ-RP 377

Query: 512 YIGIANDITEQKKSLEGILCNAF---------QDNLTGIPNRQSFLDRLTTILDLSATDD 562
           + G   D+TE+ ++       A          +D         + L+ L  +L L + + 
Sbjct: 378 FTGTLIDVTERVRNQRIQEIRANILDRIATGERDP--------ALLEDL--VLGLESLNP 427

Query: 563 NLRPTVMVIDIDK 575
           +L   VM++D D 
Sbjct: 428 DLHGCVMLVDADG 440


>gi|89093784|ref|ZP_01166730.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
            MED92]
 gi|89081914|gb|EAR61140.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
            MED92]
          Length = 1014

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 148/561 (26%), Positives = 278/561 (49%), Gaps = 17/561 (3%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                + E        + + +  ++     +T       I G           + L     
Sbjct: 467  KAEREAEVTQQVFESAAEAILIYNPDGKVIT-NSSFNRITGYDDKKARLFALSILK---- 521

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D       L      + GR Q E   R A+ +   + + I  +S++  +   Y+ + +D
Sbjct: 522  -DHPEIDATLS-----KTGRWQGESIRRKANGEPLPIWLSISALSSTKTEQSSYVAVFSD 575

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+E K++ + +   A  DNLT +PNR  F DR+ + L  +A +   +  ++ +DID++K+
Sbjct: 576  ISELKEAEQKLEKLAHYDNLTSLPNRTLFYDRIESSLARAARNGK-KTALLFVDIDRFKQ 634

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND  G   GD +LV   RRI   ++  D +ARL G+ F +IL   +    + D A  ++
Sbjct: 635  VNDNHGHHTGDQLLVEAARRISAHIRLGDTVARLGGDEFTVILSELDGLDPVQDIARRIQ 694

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            KS+  P  L ++EI  +ASIG A +      +  +LK+A++AMYH K RG N +  F   
Sbjct: 695  KSLRDPFRLDDKEIFSSASIGIAMYPDDGRNAESLLKHADVAMYHVKERGRNDILFFDKA 754

Query: 697  VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            ++     R  ++++L  A+   +L++VY P   +   EI+  EALI+W HP+ G IS  +
Sbjct: 755  INEQAEARAQLEDNLKTAINTQQLFMVYQPRFNISGTEILSAEALIRWKHPEQGFISPGD 814

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AE   +I  +  ++L +  +    W +        + +N++++ L D+ L   ++ 
Sbjct: 815  FIPLAESCGLIVELGRWVLMQACQAAQEWNENTGQ-NTPVSVNLSARQLHDSSLLIDIEN 873

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +++T   PS ++L  +E++V+ + E     L  +R IG+ L++DDFGT  S L YL  +
Sbjct: 874  ALNQTGLDPSLLELEITETMVIQDMETVISRLEAIRTIGVRLSVDDFGTGYSSLIYLKRL 933

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  TVK + S +     +     +++++I M+ ++   ++A+ +  E  +  LT   CD 
Sbjct: 934  PVSTVKIDKSFIDDVPGSSGSENLVKAVISMSHSLALNVVAEGVETEAQLSFLTENHCDE 993

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ   +A P    ++ +L+++
Sbjct: 994  IQGYLLAKPDSAETLQRLMRK 1014


>gi|300693354|ref|YP_003749327.1| modulator of rnase ii stability, signal transduction protein
           eal-ggdef domains (gmr) [Ralstonia solanacearum PSI07]
 gi|299075391|emb|CBJ34686.1| putative modulator of Rnase II stability, signal transduction
           protein eal-ggdef domains (gmr) [Ralstonia solanacearum
           PSI07]
          Length = 578

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 149/567 (26%), Positives = 264/567 (46%), Gaps = 23/567 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    + +   D  R      P  A +LG+   ++ G   + +     ++ D     +D
Sbjct: 1   MVNALTEGLMVCDAQRRITYANPSAARLLGVRLDTLVGMRLSDVVASAFDEFDTPIREVD 60

Query: 470 ----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYI 513
                 +   + +L   F +R  D +  WM     P+    G+ +              +
Sbjct: 61  WPDGEVLADGQPQLNQIFGLRCLDGRTVWMSTNWTPLYAEAGEPMTAVPAARHAQPYAVL 120

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  +   R +VM +D+
Sbjct: 121 VSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRN-RSRVSVMFLDL 179

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG   GD +L  +  R+    +  D +ARL G+ F ++L S ++       
Sbjct: 180 DRFKNVNDTLGHQFGDQLLREVATRLQACAREADTVARLGGDEFVVMLESLDSMGT-RRV 238

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P ++  +E+ +  SIG A         + +L+ A+ AMY AK RG N+ +
Sbjct: 239 AERILAAIGAPFHIDGQELFLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAKERGRNNFQ 298

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F        S R  I+  L  A + +E Y  Y P + +    IVG EALI+W+   +G 
Sbjct: 299 TFTSDLDDRVSRRFRIESGLRRASDRNEFYANYQPRVDVRTGRIVGAEALIRWNSTDFGR 358

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +     +L 
Sbjct: 359 LMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPHLRMSINLSGQAFSSGQLS 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++++      ++L  +E +++ +      LL  LR +G+SL LDDFGT  S LS
Sbjct: 418 GMVRGALTRSGLPGEAVELEMTEGILIRDDPSLHALLTELRALGVSLALDDFGTGYSSLS 477

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +       +R AI R+II MA+ +    +A+ +     ++ L  
Sbjct: 478 YLHRFPIDTLKIDRSFVQDLPHVAERAAITRAIIMMAQAMGMKTVAEGVETVGQLEFLRE 537

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCD  Q   +  PL   ++  L++E 
Sbjct: 538 IGCDEYQGYLLTRPLEPAAMHDLVREH 564


>gi|330950876|gb|EGH51136.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 748

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 160/703 (22%), Positives = 297/703 (42%), Gaps = 62/703 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V         A         +IY  ++G+              +  + 
Sbjct: 61  AWLRMISSYGDVVLVGQDSPAKAIEANGSGPTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL    V                    +  + +  ER  L    
Sbjct: 111 LSNSDDATVLSAAQRYALQAQAV------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L      D    
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPRILQC---EDTSRA 221

Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++   + + R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K
Sbjct: 222 TLDVIREALSHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWFTHWVSVQRDITERK 280

Query: 524 ---------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                                      +  E +   AF D LT + NR   ++ LTT   
Sbjct: 281 ESQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFV 340

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                   R TV+ +D+D +K +ND +G   GD +L ++  R+   ++  D+LAR+ G+ 
Sbjct: 341 T-RDSRYERATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDE 399

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   S     E+L++
Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLHTAIQIEGQDIFISCSIGIVTAGESHTKPEELLRD 459

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK +G      F  S      D ++I+  L  A+EN +  + Y PI     E 
Sbjct: 460 ADVAMYSAKKQGRGRWNIFNASMREAAIDTLVIQNALRQALENKDFLVFYQPIYSGDCEH 519

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR Q     +
Sbjct: 520 LVGAEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKQFPHLDL 579

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ K+L      + +  +I+ T     ++++  +ESV +  P+    +L ++R++
Sbjct: 580 RLNVNVSGKELSHPGFVDQVTRIIASTGLPAGQLQIEVTESVFLYQPDAIAEILRQIRQL 639

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G+ + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + ++  
Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIVSSILSLGRALDLD 699

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 700 ITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|311696941|gb|ADP99814.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 755

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/537 (27%), Positives = 263/537 (48%), Gaps = 14/537 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  +  I GL++  +    +  L  I   D+ +F   +D          +  FR   +
Sbjct: 213 FISEKVEDIFGLSADQLSKDAQPLLNLIKDEDKASFLEKVDESRRCMT-PFETSFRACKS 271

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D    W+  R  P   ++  +  + G   D+T++K+S   I   AF D LTG+PNR+   
Sbjct: 272 DGTMAWVEARSVPARLADDSMT-WHGYFFDVTDRKQSESEIEKLAFYDPLTGLPNRRLLR 330

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL   L  S  D N    ++ ID+D +K IND  G   GD++LV +  R+   ++  D 
Sbjct: 331 DRLAQALTGSNRDHN-HGALVFIDLDNFKNINDSAGHLTGDELLVQVGERLKNTVRDWDT 389

Query: 609 LARLSGNRFGIIL-----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +ARL G+ F +IL        + + K+      +R ++  P +L   E T T SIG   +
Sbjct: 390 VARLGGDEFVLILKGFPAEPADAAAKVEKVCEKIRDALNEPYDLNGIEYTGTPSIGITLF 449

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721
                +  E+L  A++AM+ AK  G N +  +     +   +R+ ++ DL +A+  ++L 
Sbjct: 450 YDHDTSLEELLSQADMAMFRAKEDGRNCIRFYDCMMQKKVSERLALESDLRVALRKNQLA 509

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y  ++     E VG EAL++W  P  G +S +EF+ +AEE  +I+++  ++LE +   
Sbjct: 510 VHYQVLVNEK-GEPVGAEALLRWHCPGRGMVSPAEFIPLAEETGLIESVGYWVLEDVLSR 568

Query: 782 IISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           I SW+++      + + +N++++       C  + AL+ KT  SP  +K+  +ES +  +
Sbjct: 569 IASWKERGGPLSKLQVSVNVSARQFHLPSFCSTVMALLRKTGASPRNLKVEITESALAYD 628

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            E     L  LR +GI ++LDDFGT  S L YL  +  D +K +   +          AI
Sbjct: 629 LELVEETLRTLRSMGIRISLDDFGTGYSSLGYLKRLSLDELKIDQGFVRDILDDPNDAAI 688

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +I+ +A  ++ + +A+ +  +  ++ L RMGC   Q  H + PL      +L+++
Sbjct: 689 AETILALASALKLSAVAEGVETKGQLERLVRMGCTRFQGYHFSRPLPALEFERLIEQ 745


>gi|299532935|ref|ZP_07046322.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
 gi|298719159|gb|EFI60129.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
          Length = 900

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 261/566 (46%), Gaps = 15/566 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 ER  LA   V  + + V   D     ++       +LG +   M G   R +  
Sbjct: 327 ASREADERSRLASTVVDNTIEGVVVTDAHSRILSVNHAFTKLLGFSEAEMLGKTPRMFKS 386

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D+  +  +  S   +  G  Q E   R  + +     + +  + ++N  +  Y+ 
Sbjct: 387 GRH--DKAFYDAMWASM--HATGHWQGEIWNRRKNGEVFPERMSLSAVKDANDKVTHYVC 442

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+ +K   + +   A +D LTG+PNR  F   L   ++LS + +  R  V++ +ID
Sbjct: 443 MFTDISAEKAREQQLEFLAHRDTLTGLPNRSQFTRMLGEAVELSQSTNR-RMAVLLFNID 501

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND  G ++GD+VL  ++ ++   L+  DI+ RL+G+   ++  S        D A
Sbjct: 502 RFKDVNDSYGHSIGDEVLRHVSVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVDVA 561

Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P        + V+ S G   +    +T+ ++L+ A  A+Y AK RG N   
Sbjct: 562 ERLMAAAGQPWTTPDGLSVVVSVSAGICLYPDHALTADDLLQGAHAAVYGAKARGSNAWC 621

Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  +      +R+ ++  L  A+E   + L Y P I L    +VG EAL++W  P+ G 
Sbjct: 622 FFHENMTQAARERLALEARLRRALELGHMRLYYQPQIDLATGRVVGAEALLRWLDPEEGL 681

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS + F+ +AE   +I  + L++L    R    WR     P + I +N++    L  ++ 
Sbjct: 682 ISPARFIPVAENSGVIGPLGLWVLGEACRQGQQWRAAGL-PDLAIAVNVSLHQFLLTDIA 740

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
                 ++K+ +  S ++L  +E  +   PE +  +L RLR++G+ L +DDFGT  S L+
Sbjct: 741 GATAEALNKSGFPASLLELEITEGALAEKPEEALAVLNRLRELGLRLAIDDFGTGYSSLA 800

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           +L   P D +K +   +     +   + I  S+I +   +   ++A+ +  +  +  L +
Sbjct: 801 HLKRFPLDLLKIDQGFIRDIPHSADDMTISSSVIALGHAMGLKVLAEGVETQEQLSFLQQ 860

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GCDY Q    + PL      +LL++
Sbjct: 861 KGCDYFQGYFCSRPLPAEDFTRLLEK 886



 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 99/328 (30%), Gaps = 21/328 (6%)

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
               V + ++    G L    ++      +        +       + ++    +  A+ 
Sbjct: 18  LYLCVGMLWLGAQAGVLG-YFDVSLNRQSLRWQIGLFIVWLLATALIALWFM--QRKARA 74

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVL-- 339
                     + ++   +              + +   L          ++G +  VL  
Sbjct: 75  DQRGRETAQELELVVRHAPAGMARVHVGGAEIVWANAKLAGWLGCSVESLRGQDFRVLVP 134

Query: 340 -------------LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
                        L+      F        A T ++   +   + V    +   +    V
Sbjct: 135 VNDQDDVALQLQRLLDGSTDYFQVLRQCVNAGTGKVTPVLCTTSRVAASGVDGPVALVCV 194

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q +         +        LA+ GSG+ VW+WD +  R+  +  ++ +L      + 
Sbjct: 195 LQDLSEMVSARNAMMRSETMLRLALEGSGNGVWEWDALEQRLNFSTGMSALLRYQGQDL- 253

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               ++   +H  D    R   +  +      L    R+   D  + W   R +   + +
Sbjct: 254 AREFDFHQRLHPEDAAGARAQAEQALEQ-GSMLVLTARLLCFDGLYRWFRARGQAYKDES 312

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G ++R  G+ +D T  +++ E     + 
Sbjct: 313 GRLIRISGLLSDQTASREADERSRLAST 340


>gi|53804908|ref|YP_113463.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758669|gb|AAU92960.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 810

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/577 (25%), Positives = 267/577 (46%), Gaps = 12/577 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +++           +             S D +  +D     V   P +   L  ++ 
Sbjct: 237 LALVRDTRLLKRTDTALLRREREFRSLAENSPDSIMRYDRDCRIVYLNPSLENTLLFSAS 296

Query: 444 SMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            M G     L   H  D   + + + L + V   +   + E  ++        + IR+  
Sbjct: 297 DMIGRTPTEL---HPGDERFETYESKLRAVVATGKAD-EIELLLQGTHKGPRLLHIRLVA 352

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             + +G+    + +  DITE  +    I   AF D LT +PNR    DR+   L  +A  
Sbjct: 353 EHDPDGECTGVLAVGRDITEVDEYRRRIQRLAFFDPLTDLPNRALLNDRIRQCLTDAAAR 412

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            + +  +M++D+D++K++ND LG + GD +L    RR+   ++  D +ARL G+ F I+L
Sbjct: 413 GS-QFGLMLLDLDRFKEVNDTLGHSAGDRLLCEAARRLNACVRGYDTVARLGGDEFSILL 471

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +   +   A  + ++      +  +E+ V+ SIG       +  +  + K A+LAM
Sbjct: 472 PVVRDRGDLRAIAGRILEAFGEAFIIEGKELFVSVSIGIVLHMEGQCDADRLFKQADLAM 531

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           YHAK +G N+ + +        SDR  ++  L  A+ N EL L Y P + L    IVG E
Sbjct: 532 YHAKRQGRNNFQFYAEELAVQVSDRTAMEGALRKALGNGELELYYQPQVALPAGRIVGAE 591

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G ++   F+ IAEE  +I+ +  ++L    R  + W       P  + +N
Sbjct: 592 ALLRWRHPQEGIMTPDRFIPIAEETGLIRDLGHWVLTTACRRAVYWHRTV-DSPFKVAVN 650

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++  + N+L   +Q ++  T   P  ++L  +ES+++GN       L  L  +G +++
Sbjct: 651 LSTRQFVRNDLPGELQRIVQDTGCRPEWLELEITESLLLGNDAEVGAALEELHDMGFAIS 710

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S + G  +  +++ ++++II +A  ++  +IA+ 
Sbjct: 711 IDDFGTGYSALSYLNRFPLDQIKIDRSFIQGFPADREKVELVKAIISIAGALQLEVIAEG 770

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +      + L   GC   Q      PL  +   +LL 
Sbjct: 771 VETSHQAEYLHAQGCRLAQGHLFGRPLPQDRFERLLA 807



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           +  R +  +  +   + +         V   P +  + G   G +          +   D
Sbjct: 9   ELVRPAGLLPAAATCILEQHPDGHVTVVHADPGMEDMFGAEPGRLL-HAAGIEASMWPED 67

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R       ++        L+ EF V        W+ +   P   S+G I R+ G   D+T
Sbjct: 68  RRRAEPRQETAQRGPM-PLRTEFPVEHPVRGPRWLELSAVPEPLSDGAI-RWHGFLTDVT 125

Query: 521 EQKKSL 526
           E++++ 
Sbjct: 126 ERRQAE 131


>gi|313682364|ref|YP_004060102.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155224|gb|ADR33902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 780

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 175/754 (23%), Positives = 318/754 (42%), Gaps = 41/754 (5%)

Query: 219 IPTFAMAWVVLGY--ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY--LH 274
           +   A   ++L Y     DF FL   V + +    IW           L  +   +  L 
Sbjct: 39  LFFGAFIVLLLFYKTNLTDFVFLWFSVVIVTLIWRIW----------LLTDYRRNFHRLD 88

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
            + W  +  Y+ +S            F  P              +L     +    +   
Sbjct: 89  HSIWERRFKYVMYSSALIWGSAAFFIFQTPD----YLHHFFIIFLLTGIASVASGTLASL 144

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA-- 392
               ++  +++L  I+ +  +    +     ++  A    LV     I   ++  + +  
Sbjct: 145 LGVTIVFLSFLLTPIFIVMFFHGEFEVQMMGMLVLAFYMLLVSAAKRINSNIMNALTSKI 204

Query: 393 -TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                +  +    ER       +   ++ +D     + T  ++   L +   +M G    
Sbjct: 205 LHQKAANALALSEERFETIFKEAPIGIFYYDTDLIVMETNNEMLQALQIPRETMIGLDLK 264

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L              L+  V  ++G  +  +     + +  W+ +R  P+ +S   I+ 
Sbjct: 265 ALSD------TRLSDALNVSVHGQKGFYEGPYTSTFVELK-MWVSLRTSPIYDSERRIIG 317

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +GI +DITE+  + E I   A+ D LT IPNR    DR+   L       +L   +M +
Sbjct: 318 GVGIVSDITERMNAEEKIKHQAYFDALTNIPNRALLKDRVDQSLAHYRRYGSL-IAIMFL 376

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----- 626
           D+D +K IND LG  +GD +L+    R+  + +  D +ARL G+ F I+L    N     
Sbjct: 377 DLDHFKSINDSLGHYIGDLLLIETANRLKHICREGDTVARLGGDEFIILLNELGNDPMVA 436

Query: 627 SLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           + +    A  + +  + P ++     I+ ++SIG    +S   TS ++LK A+ AMY AK
Sbjct: 437 ATRAETVAEKIHEVFSAPFDIGLAEPISTSSSIGIVLVSSKDQTSDDLLKFADTAMYQAK 496

Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    ++    +  +  +  +  L  AV+N+EL L Y P+I +  + I+G EAL++
Sbjct: 497 KEGRNTTRFYQEEMDQWIKKRLFLENALRSAVKNNELELYYQPVIEMKTKLIIGAEALLR 556

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI--FILINIA 801
           W+HP+ G I   E + IAEE  +I  I  ++L       + WR +         I +N++
Sbjct: 557 WNHPELGLIMPDEMIEIAEESGLIVGIGEWVLREACTQFVRWRAENLRQSHIDRIAVNVS 616

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +     ++  + +   +++T   PS ++L  +ES V+ N +     + RLR  GI +++D
Sbjct: 617 AVQFRQSDFVDKVIRTVAETGLVPSMLELELTESTVIDNIDIVIDKMNRLRHAGIGISMD 676

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL  +PF T+K + S +          A++ +I+ MA   +  +IA+ + 
Sbjct: 677 DFGTGYSSLGYLKKLPFTTLKIDRSFVRDIVSDTDDAALVETILSMASIFKFDVIAEGVE 736

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                K L   GC Y Q    + P+      +LL
Sbjct: 737 TIEQFKFLESHGCQYFQGYLCSKPVQVKHFEELL 770


>gi|71282087|ref|YP_269787.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71147827|gb|AAZ28300.1| sensory box/GGDEF/EAL/CBS domain protein [Colwellia psychrerythraea
           34H]
          Length = 858

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 143/587 (24%), Positives = 276/587 (47%), Gaps = 18/587 (3%)

Query: 381 LIGFTVIQHVLATGYFSQ----GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPD 433
           ++    + +V       Q     +    +   +A   +  S D +   D     ++  P 
Sbjct: 265 IMSDIELAYVEELHQIVQQRDIALRESKKHLLVAEKIIEASLDGIMITDEQGTIISVNPA 324

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
              + G     + G   +      H +D   F   L   +  + G  Q E   +  +++ 
Sbjct: 325 FTRVTGYKEAEVLGLNSKILSSGRHTSD---FYQQLWLCILEQ-GVWQGEIWNKRKNSEI 380

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           +   + I  +S    +   +  I +DI+E+K + + I   AF D LT +PNR+ F DR+ 
Sbjct: 381 YPQWLTIIEISEGVDNNKVFAAIFSDISERKLAEKRIENLAFYDELTQLPNRRLFFDRVD 440

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L ++   +N +  +  ID+D +K++ND  G  +GD +L S  +R+ E  K  D +AR+
Sbjct: 441 MALAIAHRKNN-KMALFFIDLDYFKEVNDNYGHRIGDLLLRSFAKRLTESSKEGDTVARI 499

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L        I      + + +  P ++    + +T SIG A +        E
Sbjct: 500 GGDEFTLLLTDMREVDHICKACNRIVEKLRQPYHIEGHALNITTSIGIAVYPEDGTNEEE 559

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           ++KNA++AMY AK  G N  + F  +     +    I+  L LA+ ++EL L Y   I  
Sbjct: 560 LMKNADIAMYRAKDIGRNSFQLFTPAMNAHSQERSLIQSHLRLALVHNELELNYQAQIHG 619

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
           +  +++G+EAL++W +P  G +S ++F+ +AEEL  I  I+ ++LE   +    W DQ  
Sbjct: 620 VTGKVMGVEALLRWYNPILGQVSPAQFIPMAEELGFIAEIDHWVLEHACKQRKLWLDQGL 679

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I +NI++       L   ++++++++      +++  +E   +   +++  +L +
Sbjct: 680 DCG-RIAVNISALHFHQGNLVASVESVLAQSQLPAELLEVEITEGCFIKQMDKATSILKQ 738

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
           L+K+G+ + LDDFGT  S LSYL  +P DT+K + S +           I  +II +A+N
Sbjct: 739 LKKMGVKVALDDFGTGFSSLSYLTSLPIDTLKIDASFIAKLPHNFRESQITSAIITLAQN 798

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   I+A+ +  E     L   GC+ +Q      P+   ++ ++++ 
Sbjct: 799 LNLDIVAEGVETEAQKIFLIERGCEIMQGYFYNKPVCAKNLPRVIQS 845


>gi|39933854|ref|NP_946130.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39647701|emb|CAE26221.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Rhodopseudomonas palustris CGA009]
          Length = 904

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/619 (23%), Positives = 264/619 (42%), Gaps = 20/619 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I++ +         + R    ++        +++ +++   + Q         + +  D 
Sbjct: 295 IVMVVTTTTEDALASWRTQTKLMVSVAAVSALVVTVILLLIIHQIGKHHRATQRKLQLDK 354

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRD 462
           +R   A+      +  +D     V        + GL+   +     +R+ L   H     
Sbjct: 355 QRLDTAINNMSQGLLLFDAQARLVICNQRYMEMYGLSPDVVKPGCSLRDVLE--HRKSTG 412

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +    +D        RL  +            +     P+         ++    D TE+
Sbjct: 413 SLGGNVDKITTDLIDRLSSQRVSEIHSIHDRSIEFSSVPVPGG-----GWVITHEDATER 467

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E I   A  D+LT +PNR  F  RL   L  ++        ++ IDID++K IND 
Sbjct: 468 KRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASR--GAPFALLYIDIDEFKSINDT 525

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD++L  +  R+ + ++  D +ARL G+ F II I  + + +       + +SI 
Sbjct: 526 LGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIR 585

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
           +P   L  +++  ASIG A          +++KNA+LAMY AK  G      F       
Sbjct: 586 LPYQCLGHQLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEPEMDAV 645

Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  ++ DL  A+ +    + Y P + L    I G EAL++W HP  G IS +EF+ I
Sbjct: 646 AKTRRQLEFDLRQAIGDRGFEVHYQPQVDLSSGAITGCEALLRWRHPTRGMISPAEFIPI 705

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  I  + L     +  +W        I + +NI+        L   + +++  
Sbjct: 706 AEDTGLINEIGAWTLATACSEAATW-----DADITLAVNISPVQFRQPSLALLVASVLGA 760

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R++L  +E+V++ + + +   L +LR +G+ ++LDDFGT  S LSYL   PFD 
Sbjct: 761 AGLPAERLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGTGYSSLSYLQRFPFDK 820

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S + G    E   AI+++++ +A     T  A+ +      + L+ +GC  +Q  
Sbjct: 821 IKIDRSFIDGIDTTEGSTAIVQAVVNIAAARRMTTTAEGVETARQREILSTLGCTQMQGW 880

Query: 939 HVASPLGFNSILKLLKERF 957
             +  +   +  KLL    
Sbjct: 881 LFSPAVPAAAFRKLLTSHL 899


>gi|315127811|ref|YP_004069814.1| hypothetical protein PSM_A2750 [Pseudoalteromonas sp. SM9913]
 gi|315016325|gb|ADT69663.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 847

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 157/565 (27%), Positives = 277/565 (49%), Gaps = 15/565 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP- 454
            +        LA   +  S D +   D     +   P    + G     + G   N L  
Sbjct: 278 ALQHSQRNLFLANKIIDSSLDGIMITDSNGVIMQVNPAFTHLTGYKEYEVIGKRPNMLSS 337

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D++ +  + DS    + G  Q E   R      +   + I  +   +   + Y  
Sbjct: 338 GRH--DKNFYIKMWDSLA--KTGVWQGEIHNRKKSGDIYIEWLSIIEIKEPSHSEVIYAA 393

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +DITE+K + E ++  A+ D LTG+PNR+ F DRL+  L  +  D  +   VM ID+D
Sbjct: 394 IFSDITERKSAEEKVVQLAYFDELTGLPNRRLFNDRLSMALASAHRDKQM-LAVMFIDLD 452

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K++ND LG   GD +L  ++ RI   L   D LARL G+ F I+L   NN       A
Sbjct: 453 RFKEVNDSLGHNAGDTLLKLVSERIINTLNEGDTLARLGGDEF-IVLCEINNVEGAITLA 511

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++   +  P  L   E+ VTASIG A +    + S  +LK+A++AMY +K  G N  + 
Sbjct: 512 ESILNHLNTPFKLEGFEVGVTASIGAAVYPDDGLDSETLLKHADIAMYRSKDVGRNSFQL 571

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F+ S      +R+ +      A+EN E  L + P   L    I+G EAL++W  P  G I
Sbjct: 572 FQPSMNARSLERLAMMSRFQHALENDEFELYFQPKQCLKTGLIMGAEALLRWHDPDLGTI 631

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEEL ++  ++L+++ +  +++  W+ Q       + IN+++  L   +L +
Sbjct: 632 SPAQFIPLAEELGLVVRLDLWVINQAGKELTLWQAQGIDAG-RLAINVSACHLSQGKLAD 690

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++A++++     S +++  +ES  + +  +++  L +L+ +G+ + LDDFGT  S LSY
Sbjct: 691 NIKAMLTRYQLPGSLLEIELTESSFISSFSQAKEQLQQLKALGVHIALDDFGTGYSALSY 750

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +PF+T+K + S +    ++     I+ +II MA ++   ++A+ +        L  +
Sbjct: 751 LTKLPFNTLKIDASFIAKIPDEYGNSQIVAAIIAMATSLGLDVVAEGVEHASQEAHLVEI 810

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC+ IQ  +   PL     +    +
Sbjct: 811 GCNAIQGYYYCHPLTQQQWIAFYNQ 835


>gi|229094411|ref|ZP_04225483.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228688948|gb|EEL42775.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 887

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 173/870 (19%), Positives = 353/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 30  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 84

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 85  YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 138

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  FL   +NL    L +        L S+L+++      Y +
Sbjct: 139 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAY 198

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 199 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 258

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 259 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 318

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 319 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 378

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 379 --YYSLTYEEDLEEIIHAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 433

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 434 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 492

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 493 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 552

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 553 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 612

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 613 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 672

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 673 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 731

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 732 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 791

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  + 
Sbjct: 792 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 851

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 852 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 881


>gi|237748829|ref|ZP_04579309.1| sensory box sensor/GGDEF/EAL domain-containing protein [Oxalobacter
            formigenes OXCC13]
 gi|229380191|gb|EEO30282.1| sensory box sensor/GGDEF/EAL domain-containing protein [Oxalobacter
            formigenes OXCC13]
          Length = 1076

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/561 (26%), Positives = 259/561 (46%), Gaps = 12/561 (2%)

Query: 402  SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             D E+  LA      S + +   +     +   P    I G  +  + G     L     
Sbjct: 516  EDEEKLELAALVYRNSSEAILISNADNHILAVNPAFEKITGYTAAEVIGRDPKLLSS-GR 574

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D+  ++ + D+     +G  + E   R  + + +   + I  + N +  +  Y+ ++ND
Sbjct: 575  QDKAFYKAMWDALDE--KGYWRGELWNRRKNGESYASWLTINVVYNEDRSVRYYVELSND 632

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             TE+K++ + I   A  D LT +PNR+  +DR+   L         +  ++ +D+D +K 
Sbjct: 633  FTEKKEAEDMIWRQANFDFLTNLPNRRMLMDRMKQELVKVNQSGK-KLALLFLDLDNFKD 691

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG   GD +L+ + +R+ + ++  D ++RL G+ F IIL   ++   +   A ++ 
Sbjct: 692  INDTLGHDAGDHLLLDVAKRLKDCVREFDTVSRLGGDEFAIILTELSDLPTMEKIAHSIL 751

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +S+A P  L      VT SIG   +         +++NA+ A+Y AK  G N +  F  S
Sbjct: 752  RSLAQPYQLGSEIAYVTGSIGITVYPDDGTDIDTLMRNADQALYAAKLAGRNRMSYFTAS 811

Query: 699  SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  +R+ +  D+ +A+   +  ++Y PI+ +    I   EALI+W HP  G IS +E
Sbjct: 812  MQAAAQNRIRLANDMRIAINEHQFEMLYQPIVEIETGRIQKAEALIRWHHPVRGIISPTE 871

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE   I  I+ +    +AR++  WR+    P + I  NI+     +         
Sbjct: 872  FIFIAEETGQILTISDWAFGEVARELSRWREHL-FPDLQISFNISPIVFQNKNDYSDWFE 930

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ K     S I +  +E V++ +  +    L    + G+ + LDDFGT  S LSYL   
Sbjct: 931  VLEKLNVPGSSIVMEITEGVLIVSNTQVLDRLAEFHQYGMEVALDDFGTGYSSLSYLKKF 990

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K + + +       K +A+  +II MA  ++  +IA+ +  +     L   GC+Y
Sbjct: 991  PIDYLKIDQAFVRHIENEPKDMALCEAIIVMAHKLDMKVIAEGVQDDGQRLLLAGAGCNY 1050

Query: 935  IQDSHVASPLGFNSILKLLKE 955
             Q    + PL      KLL+ 
Sbjct: 1051 GQGYLFSEPLTAAEFEKLLES 1071



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 6/209 (2%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           +I     G   A L      +I I    + +     L    +Q      LV +  L+   
Sbjct: 324 VITLLPLGAYNADLFYWGTKVIGISIALMALFFLAILFMVRLQEIRNQLLVNLEKLVEIR 383

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                      +  +     R         D+VW  +     +         +GL+   +
Sbjct: 384 T----DDLNKVNVVLTQSEARLKSVFENIPDLVWMKNSAGVYLACNQAYKDYVGLSDEHI 439

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G           ++ + F       +   +  +  ++   A      +  +   P+   
Sbjct: 440 IGKTD--FDIFSHDEAELFEEQDKRILKEGKPLVIEQWGTYALSGNRVFFDVIKAPVRTP 497

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAF 534
           +G+++  +GI  DIT +K+  E +   A 
Sbjct: 498 DGELVGVLGIGRDITRRKEDEEKLELAAL 526


>gi|183222770|ref|YP_001840766.1| hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912802|ref|YP_001964357.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777478|gb|ABZ95779.1| Signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167781192|gb|ABZ99490.1| Hypothetical protein LEPBI_I3429 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 818

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 270/586 (46%), Gaps = 25/586 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIV---RDRVTTTPD----- 433
           +   + +       + + +        +    S   V + +      + V  +       
Sbjct: 236 WATFRDITDRKRSQEQVKNQKAFYEFILDNLDSDIAVLNSNFEYEYTNPVFLSNREIRKW 295

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           +     +         + +            R             +++E  ++  +++  
Sbjct: 296 LYKKTDVDLAEKLDLPQEFYER---------RKKFLDIAAKNNEIVEFEELIQDQNDKVT 346

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           +++ +  P+ +S  +  R+I    DITE+K S E I   A+ D LTG+ NR  F+D    
Sbjct: 347 YLLRKYIPIDDSETNQKRFISFGVDITERKLSEERITYLAYYDALTGLANRTLFIDHANQ 406

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L    + + L       DID +K IND LG   GD +L  +  R+  ++   D +AR  
Sbjct: 407 ALKNHKSTETL-LAFYFFDIDNFKFINDSLGHTKGDILLQMVGARLKRVMTEVDTVARFG 465

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I+ +  +N    A+FA  +   ++ P +++ R++  T S+G A   +  +TS+E+
Sbjct: 466 GDEFAILKVDVSNKSSAAEFAQKILDILSQPFHIMGRDLFTTISMGIALSPNDGVTSAEL 525

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           LKN+++AMY AK  G N+ + +          R+ I+  L  A++N EL L + P I  +
Sbjct: 526 LKNSDMAMYKAKELGRNNYKFYTNELILRSEKRLYIENSLRKAIQNEELLLFFQPKISTI 585

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             ++ G EALI+W HP+ G +   EF+ +AE+  +I+ I  ++LE   R    W ++   
Sbjct: 586 TNQVCGAEALIRWKHPERGWVPPIEFIPVAEDSGIIERIGDWVLEEACRLKKQWSEKNL- 644

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P   + IN++ K L        +QA I +   +P  I+L  +ES +M NPE+S      L
Sbjct: 645 PSFPLSINVSGKQLARANWSHRVQATILQYGINPEEIELELTESSIMENPEKSIEAFEYL 704

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNI 909
            ++GI +++DDFGT  S LSYL  I  D +K + S +      E   AI ++II MA ++
Sbjct: 705 SELGIKVSIDDFGTGYSSLSYLKKINADVIKIDRSFVVDLELNEDDRAICKAIINMAHSL 764

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +        L  +GC  IQ    + PL  +  +  +++
Sbjct: 765 GLEVIAEGVENPAQRDLLHDLGCHMIQGYLYSKPLPEDEFVVFVQK 810


>gi|196036537|ref|ZP_03103932.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|228949069|ref|ZP_04111341.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195990870|gb|EDX54843.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|228810642|gb|EEM56991.1| Sensory box protein [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 735

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSNKDVWRLLHKK 732


>gi|163942989|ref|YP_001647873.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163865186|gb|ABY46245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 909

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 178/857 (20%), Positives = 345/857 (40%), Gaps = 34/857 (3%)

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174
           S  F   L              +  R+   D   F   ++P     F +      L  I 
Sbjct: 65  SRLFWITLTIGSFSYFIGDIVVAYQRLILHDYYTF---VDPSD--FFYL------LFLIS 113

Query: 175 LWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLIPTFAMA--WVVLG 230
                 Y+       L +   I      + A F   +Y++   ++ I T +    +V L 
Sbjct: 114 FAFAFLYEIIYGRDLLEQLFTICDICIIVTAQFTLSYYLLIERTIHIFTTSYIDMFVQLT 173

Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLHWNRWHAKVGYITF 287
           Y   D  FL   +NL    L +        L S+LI++      Y +   +  +    T 
Sbjct: 174 YPMADLLFLLIGINLLFRPLSLLPKQVGALLGSALILYATTDSIYAYIKYFQPEHSMFTV 233

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           + +  + +L               +  +     +     +          ++ I    + 
Sbjct: 234 APLYQVTLLLVAIACILHTKEPEKQEQILLTPQFGESIRLSLPYISVVMLIVFILVENVF 293

Query: 348 F-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL----ATGYFSQGIFS 402
             I  IGL +     L   ++       L+L  +     + + +             ++ 
Sbjct: 294 APIVVIGLMVTFAFVLIRHMLVRRQNKILLLAQMQFSLELEKQIELRTEDLVEQKNELYH 353

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +          D ++  D+  + +       T+LG  +  +      +   ++  D +
Sbjct: 354 NQQMFKSLYEHHPDPIFTLDLYGNFLNVNNAGTTLLGYQTNELLNQP--YYSLMYEEDLE 411

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              T        +   +  E R    +   +++ +   P+      I     +  DITE 
Sbjct: 412 EIITAFHHVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKE-HISGAYLMIKDITES 468

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E I   A+ D LT + NR+SF  +L   +  +         VM +D+D++K IND 
Sbjct: 469 KQQQEQINFLAYHDTLTELANRRSFHLQLEQAIVRAKLSKRP-FAVMFLDLDRFKVINDT 527

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L+++ +R+  +      LARL+G+ F I++        +   A  +  S+ 
Sbjct: 528 LGHRVGDLLLIAVAKRLERISTSNMKLARLAGDEFTILIEDYKEDRDVQKIADMIVLSMN 587

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  + + ++ SIG A +  +      +L++A++AMY  K++G N    +    ++ 
Sbjct: 588 EPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYETKNKGKNGSSLYTKELYKK 647

Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I++DL LA+ N E +LVY P + +   +I+G EALI+W HP  G IS  EF+ I
Sbjct: 648 MERKARIEKDLPLALVNKEFFLVYQPQVDITTNKIIGAEALIRWKHPLLGEISPCEFIPI 707

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   +  +  ++L      +  W+       + + +N+++K+   N+L E +  ++  
Sbjct: 708 VEETPQVIPLGHWVLRESCLQLKIWQS-FGYTNLKMSVNLSAKEFQQNQLIENISRILKD 766

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L  +E + M + + +   L +L++ GI  ++DDFGT  S L+YL   P DT
Sbjct: 767 VKIDPKDVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDT 826

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  
Sbjct: 827 LKVPKEFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKNNCKYMQGY 886

Query: 939 HVASPLGFNSILKLLKE 955
           + + PL     +K L++
Sbjct: 887 YFSKPLTSKQFIKFLQK 903


>gi|56419998|ref|YP_147316.1| hypothetical protein GK1463 [Geobacillus kaustophilus HTA426]
 gi|56379840|dbj|BAD75748.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 716

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 148/576 (25%), Positives = 264/576 (45%), Gaps = 16/576 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V++           +     R  L V  S D V  +   R+     P           
Sbjct: 146 LCVLRRQAEESGLQARLAEAERRLQLIVEHSNDYVLIFSPNRELSYIPPSWKRKTN---K 202

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       L ++H +D       L         +   EFR +    ++ WM  + + + 
Sbjct: 203 RLPVSYEEVLTFVHPDDAPVVAQKLAELYDTYETQ-SAEFRKQGEKGEWVWMEAQGKAII 261

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +   I    +I+E+K+  E +   A+ D+LTGI NR  F   +  ++        
Sbjct: 262 DEAGTLDCVIVTVKNISERKRYEEKLRQLAYFDSLTGIANRSYFERHIHELIA-----SQ 316

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +  +D DK+K IND      GD  L    +R+   L+  D  AR+ G+ F ++L +
Sbjct: 317 TPFALCYLDFDKFKWINDHFSHQAGDYFLREAVKRVERALRPGDFFARIGGDEFVLLLPN 376

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +  +   A  +  S   P    ++ I  T SIG A +        +++K A+ A+Y 
Sbjct: 377 ITKTE-MTALAEQLVSSFHEPFYYEKQLIQSTLSIGIAFFPKDSDRIEQVMKYADQALYE 435

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            K RG N    +R +  R     I++DL  A+   +LYL Y P ++L   + +G+EAL++
Sbjct: 436 VKERGRNGYAFYRPTEHRHAV--IEQDLPFAIMRGQLYLCYQPKVQLAKGKAMGVEALLR 493

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G I   +F+ +AEE   I  I L++LE+ +R +  W  +   P + + +N++  
Sbjct: 494 WRHPSLGEIPPLDFIPLAEESGFIFEITLWVLEQASRQVKEWERKF--PGLKLAVNLSPF 551

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   EL E ++ ++ +T  SP R+ L  +ES +M N E  + +L  L+++G+   +DDF
Sbjct: 552 LLNRPELIEHVKRILRETGLSPDRLILEVTESGLMENIETGQHILTELQRLGVQAAIDDF 611

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+Y+  +P   +K + S + G  E      I+ +II +AK+++  ++A+ +  E
Sbjct: 612 GTGFSSLAYIRNLPVSLLKIDRSFIEGIAENSKDATIVDTIIHLAKSLDIEVLAEGVESE 671

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             +  L++M CDY Q  + +  L    + + L+E  
Sbjct: 672 SQVALLSQMHCDYAQGFYFSRSLEAEKLQQWLEEYN 707


>gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodospirillum rubrum ATCC 11170]
 gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodospirillum rubrum ATCC 11170]
          Length = 1301

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 134/596 (22%), Positives = 252/596 (42%), Gaps = 18/596 (3%)

Query: 372  VGGLVLIVILIGFTV-----IQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDI 423
             G  + I + +           + ++     Q       +  LA      S + ++  D+
Sbjct: 709  TGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLLLASAVFSNSMEGIFVTDL 768

Query: 424  VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                +   P  + I    +  + G     L      +R+ +  +    +    G  + E 
Sbjct: 769  KGSILAVNPAFSQITLYEAAEVLGRNARILQS-GRQNREFYVALWQDVLT--IGSWRGEI 825

Query: 484  RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
              R  D +     + I  + N  G++  YIGI +D++  K S       A  D LTG+PN
Sbjct: 826  WNRRRDGEVFPEWLSISSVRNHQGEVTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPN 885

Query: 544  RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
            R     RL   ++ +      R  V+ +D+D++K IND LG   GD +L +L  R+   L
Sbjct: 886  RLLLRSRLDHAIERARRTGG-RCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACL 944

Query: 604  KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFAS 662
                 LARL G+ F  ++   +    +   A+ M + +  P  L    E+ +  S+G + 
Sbjct: 945  GDTGTLARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSVGISL 1004

Query: 663  WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSEL 720
            +         +L++A+ A+   K  GG     +  +        +  +  L  A+E  + 
Sbjct: 1005 FPEDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLGLEAGLRHALEQGDF 1064

Query: 721  YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
             L Y P+I L   E+ G+EAL++W       I    F+ +AE+  +I  +  ++L    R
Sbjct: 1065 LLHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDRFIPLAEDTGLIVPLGEWVLGEACR 1124

Query: 781  DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
             +  WR Q  MP   + +N++ +   D+ +   ++ ++ +T    S ++L  +ES +M  
Sbjct: 1125 TMQRWRSQ-GMPLTVLAVNLSPRQFRDHAIPALVRRVLEQTGLPASVLELEITESAIMEQ 1183

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--I 898
               +   +  L+ +G+ L +DDFGT  S L+ L   P D +K + S +        A  I
Sbjct: 1184 GAAAEAQMTGLKHLGVRLAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEI 1243

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +II M + ++  ++A+ +     +  L+R  CD  Q    + P+   ++ K L 
Sbjct: 1244 TATIIAMGRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEKWLA 1299



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 40/129 (31%), Gaps = 2/129 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     R       +   +   D     +     +  I+G     +     ++    H +
Sbjct: 622 LRESEARFRATFEQAAVGIAHLDPDGHWLRVNHKLCDIVGYPPDELLT--LSFQDITHPD 679

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D       +++ +  +      E R      +  W+ + +  + + +     +I +  +I
Sbjct: 680 DLRADLRQMEALLAGQIDTYTIEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENI 739

Query: 520 TEQKKSLEG 528
             +K++   
Sbjct: 740 QSRKEAELQ 748


>gi|298530997|ref|ZP_07018398.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509020|gb|EFI32925.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 721

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 134/566 (23%), Positives = 256/566 (45%), Gaps = 13/566 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLPY 455
           ++ +    ++       S   +   D     +T    +   ++G     +   + ++L +
Sbjct: 152 TRQLQESEKKYRTLFETSKSAMLLVDTESGLLTMANKEFCDLIGYTRQEVENSL-HFLNF 210

Query: 456 IHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +H +D +  R   D+          ++E +    + +   +  ++  +     +    + 
Sbjct: 211 VHPDDHERARKYFDTSRQDAGTAPAEFEIKGLTREEKKLHLYYKVAAIP----EWNSLVI 266

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              D+T++++  E +    F ++LTG+PN + F +RL   +     D      V+ ID+D
Sbjct: 267 SIFDLTDKRRVEEELRQRTFYNSLTGLPNSELFKNRLKKSIQTRQEDQGYFFAVIFIDLD 326

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG   GD+++  + +R+   +K  D +A   G+ FG+++ +E+        A
Sbjct: 327 RFKLVNDSLGHQKGDELISLMAKRLERGVKKRDTVAHFGGDDFGLLIEAEDLPEAALR-A 385

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             ++     P  +   EI  T S+G    +       E+ ++A+ A++ AK  G  +   
Sbjct: 386 EKIKDQFVEPFEIAGNEIYTTCSMGIVVSSQDYSEPEEIFRDADTALHRAKSTGPGNYVV 445

Query: 695 FRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F           + ++ +L  A++  E  L Y PI  L D  I G EALI+W HP+ G +
Sbjct: 446 FDPQMHAQVSDLLQLETELRKAIQQKEFVLYYQPIYNLADLRITGFEALIRWIHPEKGMV 505

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             + F+ IAEE  +I  +  ++L+   R    W        + + IN++     D  L  
Sbjct: 506 PPNVFIPIAEETELINPLGEWILDTACRQARKWNK--GGRELTMNINLSGVQFKDKNLIN 563

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++    K   SP  I L  +ESVVMG+ E S   L +++K+G  L++DDFGT  S L+Y
Sbjct: 564 VLENTFRKNSISPLHINLELTESVVMGDAEESINTLNKIKKLGARLSIDDFGTGYSSLNY 623

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L   P D +K + S +     +    ++R+I+ M +++    +A+ I     +K L  + 
Sbjct: 624 LQKFPIDNLKIDRSFINTMETQSGQELVRAILAMTQSLGIKAVAEGIETWEQVKLLQELN 683

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C+  Q  H + PL   S   LL+E  
Sbjct: 684 CNLGQGYHFSKPLDEESADALLQEHN 709


>gi|119897858|ref|YP_933071.1| GGDEF/EAL-domain-containing protein [Azoarcus sp. BH72]
 gi|119670271|emb|CAL94184.1| GGDEF/EAL-domain containing protein [Azoarcus sp. BH72]
          Length = 1090

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/652 (22%), Positives = 278/652 (42%), Gaps = 19/652 (2%)

Query: 308  ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
            A  AR    S          +  ++       L           I + +     L   ++
Sbjct: 450  ADWARGLPVSRSALQFAGRQWSLVQRAGP-EYLGAIRSWAAWSSIAIGLVSVGILGAFLL 508

Query: 368  QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                 G    I  LI     +   A     Q   +       A   +    W+ D     
Sbjct: 509  IT--TGNTRRIAALIERRTTELASAGSKLRQQQAALA----QAQRVARLGSWETDNELCE 562

Query: 428  VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
            V  + ++  +L    G + G +   +  +   DR      L+            + RV+A
Sbjct: 563  VRCSAELHRVLERPEGRL-GTMEELMDAVIPLDRPALLGALEQVARAP-DHATLDCRVQA 620

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +     I        +G + R  G   D+T  +++   I   A  D+LTG+PNR ++
Sbjct: 621  RPTRIVQFQIES---EWQDGVLERIRGTVQDVTSAREAEAHIQYLAHYDSLTGLPNRSAW 677

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +++  + L L+    ++   V+ +D+D +K +ND LG  VGD +L ++ +R+   L+  D
Sbjct: 678  MNQARSALSLAQRHQHI-LAVLFLDLDNFKTVNDSLGHPVGDRLLAAVAQRLAHCLREED 736

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
              ARL G+ F  +L     +   A  A  M  ++A P+ + + E+  + SIG + + S  
Sbjct: 737  SFARLGGDEFVALLPRVTRAEDAAAVARKMLDALATPVVIDDHELAPSVSIGISLFPSDG 796

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYH 725
                 +LK+A+ AMY AK  G N+ + F         +R++++  L  A+E +EL L Y 
Sbjct: 797  TDVDTLLKHADTAMYGAKEVGRNNFQFFVPEMNTRALERLLLENALRRAIERNELTLHYQ 856

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P +    +   G EAL++W HP +G +  ++F+ IAE+  +I  +  ++L    R  + W
Sbjct: 857  PQVAATSDRPNGCEALVRWQHPDFGLVPPAQFIPIAEDSGLIVPLGEWVLREACRQQVKW 916

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                    + + +NI++      +  + +  ++++T  +P RI+L  +ES +M   +   
Sbjct: 917  ARSGLH--LMVGVNISALQFRRADFVDSVVQVLAETGANPERIELEITESALMDASDALS 974

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
              L  L  +G+SL LDDFGT  S L+YL  +P   +K + S +       +  A+  + +
Sbjct: 975  RRLRELANMGLSLALDDFGTGYSSLAYLKRLPIGRLKIDRSFVKDLPGDPEDAAVTAATL 1034

Query: 904  PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +A+++   ++A+ +        L   GC  +Q    + PL   +    ++ 
Sbjct: 1035 SLARDLGLEVVAEGVETVAQRDFLVARGCHTLQGYLYSRPLDVAAFEAWMQA 1086


>gi|302879551|ref|YP_003848115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302582340|gb|ADL56351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 725

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 154/701 (21%), Positives = 293/701 (41%), Gaps = 42/701 (5%)

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLL---- 340
                  + I   ++     +        +    +++        M  G   A       
Sbjct: 23  VVIMSLALFIRLAIAPVDAGLQYVTFFPAITLAAIFWGCRAGLLAMAMGVGFATYFFIPP 82

Query: 341 ----------IPAW--ILIFIWFIGLWMAITKRLDN---DIIQPALVGGLVLIVILIGFT 385
                     I AW  ++  +  + +  +I           ++ A +      V  +   
Sbjct: 83  FYSFENEGLKIMAWSNLVFLVDGLLVSFSIEAMHRYRKKSEVELAEIKLAHSQVSTLNSE 142

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + +       Q +       + A   + D +   D     +        I G +S   
Sbjct: 143 LDEMLHKQRETEQELLIS----ATAFE-AQDGIMITDSKGVILRVNQAFTDITGYSSEEA 197

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R      H  D   F   +   +    G+   E   R  + + +   + I  + +
Sbjct: 198 VGQTPRLLKSGRHDAD---FYAAMWQCIKN-TGQWSGEIWDRRKNGEIYPKWLTITEVKS 253

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G ++ Y+    DIT +K S + I   AF D LT +PNR+  LDRL   +  S  D   
Sbjct: 254 FDGSVVHYVSSQVDITARKASEDRIHNLAFYDPLTQLPNRRLLLDRLRHSVSFSLRDGR- 312

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +M ID+DK+KKIND LG  +GD +L  +  R    ++  D +ARL G+ F ++L   
Sbjct: 313 HVALMFIDLDKFKKINDTLGHDIGDLLLKQVAERTLTCVRTCDTVARLGGDEFVVLLDGL 372

Query: 625 N-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
                  + +       +  ++    +L   E    ASIG A +     T+ ++LK A++
Sbjct: 373 AGNLHEAAAQAKQIGRKIIDTLNQSYDLAGHEYQSGASIGIALFDEHCQTAEDLLKQADI 432

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N +  F      S      +++D   A+   + Y+ Y P+I   +  + G
Sbjct: 433 AMYQAKKAGRNTLRFFDPEMQASILARVALEKDFKDALLQEQFYICYQPVIS-REGRVAG 491

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W H   G +S ++F+ +AEE  +I  +  ++L+   R +  W  + +   + I 
Sbjct: 492 AEALVRWRHSIRGIVSPADFIPLAEETGLIVPLGNWVLKTACRQLSDWSSRDDTRDLTIA 551

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++ L   +    +  LI +T  +P R+KL  +ES+++ + E   + +  L++ GI+
Sbjct: 552 VNVSARQLKQEDFVTTVMGLIEETGANPRRLKLELTESMLVSDAESIIVKMNLLKEAGIT 611

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIA 915
             LDDFGT  S L+YL  +P D +K + S +     +  A++   + I +A N++  ++A
Sbjct: 612 FALDDFGTGYSSLAYLSRLPLDQLKVDQSFVRNIETEDSAVVICAATINLAHNLKLKVVA 671

Query: 916 KDIYGEIDIKELTR-MGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  E     L+    CD++Q    + P+  +     ++ 
Sbjct: 672 EGVENEAQRYFLSSVHQCDFLQGYLFSKPVAIDEFECFIRN 712


>gi|120602911|ref|YP_967311.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris DP4]
 gi|120563140|gb|ABM28884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
          Length = 926

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/570 (25%), Positives = 268/570 (47%), Gaps = 10/570 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH 457
            +     R       S   +         +   P    +LGL    + G     +LP   
Sbjct: 361 ALQESEARFRAIFEHSAAGICLVGRDGLLMDANPAFEELLGLTRAEVVGCRFDAFLPVKA 420

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            ++ D   +   S     R  +         D +  W    +  + +  GD+   +    
Sbjct: 421 ASELD---STCRSSFAEGRDTVSLRLPFLRVDGEQRWGRQIVTAVRDVAGDVAFVLAQVE 477

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITEQ+++   +   AF D LTG+PNR  FLDR+ T L  +   +     V+ +D+D++K
Sbjct: 478 DITEQQQTEARLTRMAFHDALTGLPNRVLFLDRVETALRRARRHETYHFAVLFLDLDRFK 537

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG   GD++L    RR+   L+  D +AR  G+ F I+L   ++  +  +    +
Sbjct: 538 VVNDSLGHKAGDELLRQFARRLEPCLREVDTMARFGGDEFAILLDDMSDVDESVNIIERL 597

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + ++  P  +   E+   ASIG          + ++L++A++AMY AK  G      F  
Sbjct: 598 QAALRQPFLVQGMEVYTGASIGAVLRARDYTQAEDILRDADIAMYRAKDSGKGRFVVFES 657

Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S+     D +  + +L  A++  E+ L + PI+ L    I GLEAL++W HP+ G ++  
Sbjct: 658 SAAPGAQDILRRENELRRALDGDEIELYFQPIVALRTGRITGLEALVRWQHPEQGLLAPG 717

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  +++ +  +    +++ ++     P+ + INI+++      + + + 
Sbjct: 718 TFIPLAEESNLICDLDMHVFRKGCLAVVALQEAF-EGPLAVNINISARSFRRLRMVQDIT 776

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T   P  +KL  +E++++   E     L RL+ +G+SL LDDFGT  S L+YL  
Sbjct: 777 DILRETGCPPQMVKLEITENLLLTGLE-VTDKLWRLKDLGLSLVLDDFGTGYSSLNYLRQ 835

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S ++   E+R A  I+ SI  + + +   ++A+ I      + L  +GC 
Sbjct: 836 FPMDILKIDRSFISRVHEERAARGIVESIANLGRTLGLGVVAEGIEVSEQAEILLEVGCP 895

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + Q    + P  F+ +L+ L+ R PL  + 
Sbjct: 896 HGQGYFYSRPQPFDRMLRTLERRRPLPLSA 925


>gi|124267696|ref|YP_001021700.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124260471|gb|ABM95465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 826

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/572 (25%), Positives = 250/572 (43%), Gaps = 17/572 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                      +  +  +     S D ++  D              I GL    + G   
Sbjct: 243 FRDITEQLASAARLQLAAQVFESSLDAIFVTDGEHRIAAVNASCERITGLGREQLVGLRT 302

Query: 451 NWLPYIHI---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +H    +D D     L       RG  + E   R AD       + +  ++    
Sbjct: 303 E--ALLHPPGADDADTAWFELVREQLAHRGVWEGELWHRRADGSTLPGQVSLVRLAAEGT 360

Query: 508 DI----LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           D     +R++G   D+TE   + + I   AF D LTG+PNR    +RL   L +S     
Sbjct: 361 DPGETGVRHVGFFKDLTETVAAQKRIEELAFTDALTGLPNRVMLAERLDFALAMSHRHQ- 419

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D++K+IND LG   GD VLV +  R+   L+  D +ARL G+ F ++L +
Sbjct: 420 TPFALLFLDLDRFKQINDSLGHVFGDRVLVEVAERLKTCLRQIDTVARLGGDEFVMLL-N 478

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           + ++      A  + + +  P  L     +VTASIG A + +   +  +++KNA+ AMY 
Sbjct: 479 QTDARGAEAIARRVLEVLGQPFTLEGMSFSVTASIGIAMYPNDGESMDDLIKNADAAMYR 538

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K RG      ++          +K D  + LA+E  +  L Y P I +    +VG EAL
Sbjct: 539 VKERGRAGFRFYQPQMNVDLLARMKLDHSMRLALERGDFRLHYQPQIDIASNAVVGAEAL 598

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W  P  G++S  EF+ +AEE   I A+  ++L    R    WR Q     + + +N++
Sbjct: 599 LRWRDPGLGDVSPGEFIPVAEESGFIVALGEWVLREAVRQAALWRAQGR--SMVVSVNVS 656

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +      +  + +   +++     + ++L  +ES+++ + + +   L  L ++G+ L +D
Sbjct: 657 ALQFQQADFVDRVATALAEAKLPATWLELELTESILIRDADEALQRLRALDRLGVQLAID 716

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL   P   +K + S + G    E    I +++I +A+ +   +IA+ + 
Sbjct: 717 DFGTGYSSLGYLKRFPIRKLKIDRSFIKGLPGDESDAGIAQAVIQVARALRLRVIAEGVE 776

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  L R GCD IQ    A  L       
Sbjct: 777 TMAQRDFLQRAGCDEIQGFLFAPALPVAEFEA 808



 Score = 44.6 bits (104), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 41/151 (27%), Gaps = 10/151 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM- 445
           ++   A       +          +  + + +   D+           A +  +    + 
Sbjct: 116 LRDQSAQRQAEDELEKLVAELRATLESTAEGILVTDLHGAIRGCNQLFAQLWDMPVELLT 175

Query: 446 ---HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                 I  W+   H+ D   F   +         R     R+R+       +   + P 
Sbjct: 176 QRDDSQILEWMRG-HVVDEQRFVERMGELDRDPLLRASDVLRLRSG----RVLERVVLPQ 230

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               G  +  +    DITEQ  S   +   A
Sbjct: 231 YGR-GQPIGRVCSFRDITEQLASAARLQLAA 260



 Score = 39.9 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + G    ++ G     L      D   +  +          ++  +  VR AD +   + 
Sbjct: 39  LFGQPVSALVGRPVIELSAT-PEDECFWEDMAAGVGTAEGPQIHSDSFVRHADGRMIPVE 97

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            R+  +    G  +  +G   D + Q+++ + +   
Sbjct: 98  RRVNRIWMRPGQAIFVLG-LRDQSAQRQAEDELEKL 132


>gi|322420751|ref|YP_004199974.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geobacter sp. M18]
 gi|320127138|gb|ADW14698.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 594

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 132/592 (22%), Positives = 246/592 (41%), Gaps = 22/592 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-----IVWDWDIVRDRVTTTPDIATI 437
               +Q   ++      +  DGER ++             +   D     +      + +
Sbjct: 8   ELRSLQLGPSSEQRLTELQQDGERLAMLQEAIDSLPISAGITISDTDGKIIYVNAAESEM 67

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G A G + G   + L             +L        G  + E      D     + +
Sbjct: 68  HGYAPGELIGKQASLLA-------PRRDVVLPRINHGTIGLWKRESLNVRKDGLVFPVQL 120

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
              P+ N++G  L  +    DIT +K+    +   A+ D +T +PNR   +DRL   L L
Sbjct: 121 TSLPIKNASGRCLGMVTACEDITARKEFERQLETLAYYDTVTKLPNRALLMDRLHQALAL 180

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  +      ++ +D+D +K +N   G  VGD  L  +  R+   L   + LAR  G+ F
Sbjct: 181 AQREGR-ELALLFLDLDNFKDLNSARGHEVGDKFLQEVAARLASCLCEANTLARPGGDEF 239

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I++ S  +   +A  A  ++     P  +   E+  + SIG A +         +L+ A
Sbjct: 240 VIVINSGPDEEGVAATAARLQALFIEPFGIDGEEVYGSTSIGIALFPEDGSDVESLLRCA 299

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + A+Y AK  G    + F             ++  +   +   E +L + P   L    +
Sbjct: 300 DAALYQAKSEGKGGYQFFSQEMNERTMRRVALENGMRQGLARDEFFLHFQPQWDLKSFRL 359

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EAL++W   ++G +   EF+ IAE   +I  +   +L +     + W +    P + 
Sbjct: 360 TGAEALLRWQSAEFGLVGPDEFIPIAESSGVIFDLGELVLRQACLHAVRWEE--FCPDLK 417

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +NI+ +        E M  ++ +T   PS ++L F+ESV+M   E++   L  L+++G
Sbjct: 418 VAVNISGRQFRQPGFLETMARVVRETGVRPSSLELEFTESVIMERAEKNIDALQALKRMG 477

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           + L++DDFGT  S L+YL + P D +K + S +          AI  +II MA +++  +
Sbjct: 478 VRLSIDDFGTGYSSLNYLKHFPIDAIKIDRSFIAELVTDSDDAAIADAIISMAHSLKLKV 537

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK---ERFPLVKN 962
           IA+ +     +  L    CD  Q  + A+P+        ++   +   + + 
Sbjct: 538 IAEGVENSDQLHFLVGRKCDEAQGFYFATPMPGEEFTNYVRQCCQHKQVSRR 589


>gi|319764707|ref|YP_004128644.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119268|gb|ADV01757.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 921

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 137/559 (24%), Positives = 245/559 (43%), Gaps = 10/559 (1%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              R +L    + + +   D         P    I G  +  + G   N L      DR 
Sbjct: 356 SARRAALVYQHTSEAMVVTDAQGVVQDINPAFTAITGYEAADILGRRMNVLSSGG-QDRA 414

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            +  +  S      G    + R R  + +     + I    N +G +  +IG+  D+TE 
Sbjct: 415 FYEALWTSLKE--TGSWSGDMRNRRKNGEEFVERLTISTSYNEDGSVHSHIGLFADVTEA 472

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    I   A  D+LT +PNRQ F   L   +D +    +L   ++ +D+D +K++ND 
Sbjct: 473 RRREASIWRQAHYDHLTQLPNRQMFQQDLQRSMDSA-RASDLPLALVFLDLDYFKEVNDT 531

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD++L  + RR+   ++  D +ARL G+ F +IL               +  ++A
Sbjct: 532 FGHDMGDELLRQVARRLQSCVRSSDQVARLGGDEFTLILRDLKRLEDAPAICRKVLHAVA 591

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            P  L    + V+ S G   +         +LK+A+LAMY AK +G N    F   +   
Sbjct: 592 QPYELSGSTVHVSVSAGVTFYPRDGDDGVTLLKHADLAMYAAKEQGRNQFCEFAPTMEQE 651

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R ++  DL   ++  E  L Y PI+ +     V  EAL++W+ P  G +S ++F+ +
Sbjct: 652 AQNRRLLLRDLQQGLDEGEFALHYQPIVEMRSGRTVKAEALLRWNQPVRGMVSPADFIAL 711

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALIS 819
           AEE  +I  +  +++   A  +  WR+    P   + +N++   L  +    +   A + 
Sbjct: 712 AEESGLIVPLGDWVMREAACQLAQWREDIA-PAFKLSVNVSPVQLNSSGHCVQAWVAHLQ 770

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 S +    +E V++   + +   L  L+  GI L LDDFGT  S LSYL     D
Sbjct: 771 DLSLPGSALVAEITERVLLEADKDTDARLQTLQSAGIQLALDDFGTGYSSLSYLKRFDID 830

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++  ++  +   + ++II MA  +   ++A+ +        L R GCDY Q 
Sbjct: 831 YIKIDRSFVSLLSQGNEDATLCQAIIAMAHQLGICVVAEGVETREQHDILLRAGCDYGQG 890

Query: 938 SHVASPLGFNSILKLLKER 956
                P+    + + L+ +
Sbjct: 891 YWYGRPMPAQELTERLRAQ 909



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 14/180 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGS 414
           MA+ +      +  +   G +  V+      I  +L      +   +  +   +     +
Sbjct: 196 MALGRYGTRTRLSTSDELGELARVLDHSAAHIAQLLQDVAQERSALAQMQAMFNGLAENT 255

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              ++  D     +     +A ILG     +       +  +        R         
Sbjct: 256 VAGIYMLDESDRIIYANEQLAQILGYGRAQLSDRFP--MERLFP---PPARAAAHQHSA- 309

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                ++E     AD     + I    M+   G     IG+  DITE+K++       A 
Sbjct: 310 -----RHERSALRADGSKIEIEIFGSAMTF-QGRPA-VIGLVMDITERKRAEMSARRAAL 362


>gi|29833846|ref|NP_828480.1| hypothetical protein SAV_7304 [Streptomyces avermitilis MA-4680]
 gi|29610971|dbj|BAC75015.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 717

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 134/581 (23%), Positives = 255/581 (43%), Gaps = 16/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +  + A G   Q + +   R      G+   +   D+  + +     +  + G + 
Sbjct: 135 EAISVAALQAQGVVGQALHASEARFRAVFEGAAIGIGIADLEGNILQINGALLRMFGGSE 194

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++ G  RN   + H +D      + +  V   R     E      D    W  + +  +
Sbjct: 195 QAVRG--RNVTDWTHPDDAPQVWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLL 252

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +++G     + +  D TE++     +   A  D LTG+PNR  F +RL   L       
Sbjct: 253 RDADGRPEYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALS---AGG 309

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621
             R  +  +D+D +K IND LG A GD +LV +  R+        +++ARL G+ F  + 
Sbjct: 310 GQRFGLCYLDLDGFKTINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALT 369

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +   ++ + A  +  ++  PI++  RE+ V  SIG     + +   +E+L++A++ M
Sbjct: 370 TGPDTEREVDELAGRIMNALVTPISIDGRELAVRGSIGIVEGPAGERGPAEVLRSADITM 429

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  GGN  E     +         +   L  A++ +E ++ Y P++ L D  + G E
Sbjct: 430 YRAKSAGGNRFELADPEADARAITRHGLTTALPAALDRNEFFIEYQPLVHLGDGSVRGAE 489

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD---QANMPPIFI 796
           AL++W HP+ G +    F+ +AE   +I  +  ++LE+  R    W++        P+ I
Sbjct: 490 ALVRWLHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWQERHCAEAAAPLRI 549

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L    L      ++ ++   P  + L  +ES ++G  +     L RL ++G+
Sbjct: 550 NVNLSPCQLTHPGLVSDTVDILERSGLEPGALCLEVTESALIGADDDLLKPLRRLAEMGV 609

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911
            + LDDFGT  S L+ L  +P   +K + S   G          + I+  I+ +A +++ 
Sbjct: 610 DIALDDFGTGYSNLANLRRLPVSILKLDRSFTQGMQQYPADPVDLKIVEGIVTLAHSLDL 669

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +  + +      ++L  +GCD  Q  + A P     + +L
Sbjct: 670 AVTVEGVETGAQAEQLRILGCDTAQGWYYARPGPPERLHEL 710


>gi|320326747|gb|EFW82792.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331279|gb|EFW87222.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 642

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 153/623 (24%), Positives = 286/623 (45%), Gaps = 17/623 (2%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      + L   I +       Q       VL+  ++ F     ++ ++   
Sbjct: 14  LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              Q   +D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H    + ++ +  S +    G+   E   R    + +     IR +   +G   
Sbjct: 134 KFKSGRH--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G  
Sbjct: 309 AALAQQVIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  AVE  +L + Y P   L+   I G+EAL++W HP+
Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPAHDLVTRRIRGVEALVRWQHPE 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSRLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +   + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   GC   Q    A P+   +I
Sbjct: 608 LLGNGCQLGQGYWFARPMVAQAI 630


>gi|330830342|ref|YP_004393294.1| GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805478|gb|AEB50677.1| GGDEF domain protein [Aeromonas veronii B565]
          Length = 834

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 150/598 (25%), Positives = 265/598 (44%), Gaps = 22/598 (3%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDR 427
            AL+         +   +    +      + + SD + R S     + + +   D     
Sbjct: 231 LALLYSAPADTSNLTSVLNTFSVRMVAELERLQSDAQMRLSAVAFETHEGIIITDPGFKI 290

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +      + I G  S S+ G        +H   D       L  +      R Q E + R
Sbjct: 291 LRVNNAFSQITGFDSQSVLG--------LHLEEDLWPNLGGL-GYELNTLSRWQGETQRR 341

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D   +     + P+ +  G I  ++    DI+E+K +   I   A+ D LTG+PNR+ 
Sbjct: 342 HVDGHTYPQWEIVTPVQDEKGVISHFVICFEDISERKAAERRIQDLAYYDELTGLPNRRQ 401

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             + L    + +  D  L   ++ ID+D +K IND LG A GD +L  +  R+  L++  
Sbjct: 402 LHETLVQTFNEATRD-GLIGALLFIDLDHFKTINDSLGHATGDWLLKEVAARLKRLVRQG 460

Query: 607 DILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           D LARL G+ F ++L S         ++    A  +   IA P   + + + + AS+G  
Sbjct: 461 DCLARLGGDEFVLLLPSLSASPPQAEMQADIIAERLITEIAAPYTYVGQVLHIGASVGIT 520

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSE 719
            +   +    ++LK A+ AMY AK  G      F  S  +     +    +L  A+   E
Sbjct: 521 LFPDREQGVDDLLKQADTAMYQAKSAGRKTRRFFDASMQQQADRRLLIHNELRNALSQQE 580

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P   +   +I+G+EALI+W       +S +EF+ IAEE  +I  I  ++L    
Sbjct: 581 LTLYYQPQHMVDGGDIIGVEALIRWQPAGRSLVSPAEFIPIAEETDLIVDIGNWVLHEAC 640

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
              + W +     P  I +N+++K     +  E +  ++++T   P+ + L  +ESVV+G
Sbjct: 641 AQYVLWEENGIHIP-QISVNVSAKQFHATDFVERIHDVLAQTGMDPACLNLEITESVVLG 699

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           + E +   +  L+++GIS  +DDFG   S LSYL  +P D +K + S +         +A
Sbjct: 700 HAEDTISKMTELKELGISFAIDDFGAGYSSLSYLKRLPADELKIDRSFIQDIPKDGDNMA 759

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ ++I MA+++   + A+ +     ++ L   GC + Q    + PL    + K ++ 
Sbjct: 760 IVEAVIAMARHMGFNVTAEGVESRQQLEFLKAQGCSFYQGYLASKPLPVPYLEKYVQR 817


>gi|196045747|ref|ZP_03112977.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196023578|gb|EDX62255.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
          Length = 909

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 173/870 (19%), Positives = 353/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            + +    +V L Y   D  FL   +NL    L +        L S+L+++      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMADLLFLLIGINLLFKPLSLLPKKVGALLGSALLLYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMISFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  + 
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|165871333|ref|ZP_02215982.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167640372|ref|ZP_02398636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170688171|ref|ZP_02879382.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708029|ref|ZP_02898477.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177651942|ref|ZP_02934525.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190569113|ref|ZP_03022012.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227818111|ref|YP_002818120.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229601817|ref|YP_002869563.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|164713000|gb|EDR18528.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167511592|gb|EDR86974.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170127002|gb|EDS95881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170667864|gb|EDT18616.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|172082646|gb|EDT67710.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190559781|gb|EDV13767.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006433|gb|ACP16176.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229266225|gb|ACQ47862.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 735

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|46579601|ref|YP_010409.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449016|gb|AAS95668.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233405|gb|ADP86259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris RCH1]
          Length = 926

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/570 (25%), Positives = 268/570 (47%), Gaps = 10/570 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH 457
            +     R       S   +         +   P    +LGL    + G     +LP   
Sbjct: 361 ALQESEARFRAIFEHSAAGICLVGRDGLLMDANPAFEELLGLTRAEVVGCRFDAFLPVKA 420

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            ++ D   +   S     R  +         D +  W    +  + +  GD+   +    
Sbjct: 421 ASELD---STCRSSFAEGRDTVSLRLPFLRVDGEQRWGRQIVTAVRDVAGDVAFVLAQVE 477

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITEQ+++   +   AF D LTG+PNR  FLDR+ T L  +   +     V+ +D+D++K
Sbjct: 478 DITEQQQTEARLTRMAFHDALTGLPNRVLFLDRVETALRRARRHETYHFAVLFLDLDRFK 537

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG   GD++L    RR+   L+  D +AR  G+ F I+L   ++  +  +    +
Sbjct: 538 VVNDSLGHKAGDELLRQFARRLEPCLREVDTMARFGGDEFAILLDDMSDVDESVNIIERL 597

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + ++  P  +   E+   ASIG          + ++L++A++AMY AK  G      F  
Sbjct: 598 QAALRQPFLVQGMEVYTGASIGAVLRARDYTQAEDILRDADIAMYRAKDSGKGRFVVFES 657

Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S+     D +  + +L  A++  E+ L + PI+ L    I GLEAL++W HP+ G ++  
Sbjct: 658 SAAPGAQDILRRENELRRALDGDEIELYFQPIVALRTGRITGLEALVRWQHPEQGLLAPG 717

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  +++ +  +    +++ ++     P+ + INI+++      + + + 
Sbjct: 718 TFIPLAEESNLICDLDMHVFRKGCLAVVALQEAF-EGPLAVNINISARSFRRLRMVQDIT 776

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T   P  +KL  +E++++   E     L RL+ +G+SL LDDFGT  S L+YL  
Sbjct: 777 DILRETGCPPQMVKLEITENLLLTGLE-VTDKLWRLKDLGLSLVLDDFGTGYSSLNYLRQ 835

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S ++   E+R A  I+ SI  + + +   ++A+ I      + L  +GC 
Sbjct: 836 FPMDILKIDRSFISRVHEERAARGIVESIANLGRTLGLGVVAEGIEVSEQAEILLEVGCP 895

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + Q    + P  F+ +L+ L+ R PL  + 
Sbjct: 896 HGQGYFYSRPQPFDRMLRTLERRRPLPLSA 925


>gi|89092461|ref|ZP_01165415.1| sensory box/GGDEF/EAL/CBS domain protein [Oceanospirillum sp.
           MED92]
 gi|89083549|gb|EAR62767.1| sensory box/GGDEF/EAL/CBS domain protein [Oceanospirillum sp.
           MED92]
          Length = 837

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 154/597 (25%), Positives = 267/597 (44%), Gaps = 18/597 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYF----SQGIFSDGERQSLA---VLGSGDIVWDWDIV 424
           V GLV    ++    + +V           + +        LA   +  S + +   D+ 
Sbjct: 245 VIGLVSYGDILRNVEMDYVYRLKELLHERDRALALSQHNLKLADKVIEASMEAIVVTDLQ 304

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                  P    I G     + G   N L     +    F   + + +    G  Q E  
Sbjct: 305 ARIQRVNPAFTEITGYEEWEVLGKNPNLLSSGRHD--ALFYQKMWASL-QETGTWQGEIW 361

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            +  D   +   + I  + +  G I +Y  I +D+TE KKS   I   A+ D LT +PNR
Sbjct: 362 NKRKDGTIYPEWLTITAVEDEAGQICQYASIFSDLTEIKKSEARIKRLAYFDELTRLPNR 421

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F DRL   L  +    + +  +  +D+D ++++ND  G+  GD VL  + RRI  +L 
Sbjct: 422 KLFNDRLHLSLGYAQEHGH-KAALAFLDLDFFQRVNDRFGLDAGDQVLREVGRRIENVLC 480

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +AR  G+ F +IL    +   ++++   + + +  PI +   +I +T SIG + + 
Sbjct: 481 EGDTVARFGGDSFNMILTDVEDDQAVSEYLTRLLEVVNQPIMVAGSDINLTVSIGVSFFP 540

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
           S    + ++ + AE A+  AK  G N    F     R    R  +  DL  A+E  +  L
Sbjct: 541 SDATDAEDLFQCAEAAVKQAKDFGRNSYRFFSSEQHRLVQSRYRMSGDLHRAIETDQFQL 600

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + L   + VG EALI+W HP+ G I   EF+ +AE+L  I  I  ++L    R  
Sbjct: 601 YYQPKVDLQ-RQTVGAEALIRWSHPELGFIPPGEFIPLAEDLGFIDQIGHYVLCEAVRQA 659

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W DQ     + + IN+++K +   ++ E +  ++ +    P  + +  +E+  +   +
Sbjct: 660 KEWYDQG--LSVQVAINVSAKQMQRRDMAEEVLQVVEQYSCPPHLLAVELTETSFLHCLD 717

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +R  + +LR  GIS+ +DDFGT  S LSY+  I  D +K + S +     ++    I+ 
Sbjct: 718 ETRATIKKLRDAGISIAIDDFGTGFSSLSYIRNIDMDVLKIDRSFLINIENSDVDRTIVS 777

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           SII M++ +   ++A+ I  E     L  + CD IQ   +A P+   +     K + 
Sbjct: 778 SIIEMSQAMGLQVVAEGIETETQFAMLKALNCDQIQGYLIARPMPAENFSDWFKAQL 834


>gi|115360686|ref|YP_777823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
 gi|115286014|gb|ABI91489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
          Length = 745

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/592 (24%), Positives = 256/592 (43%), Gaps = 26/592 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLA----------VLGSGDIVWDWDIV 424
           +  L+ F  +   +   Y +Q    +    E   LA             + + +   D  
Sbjct: 148 LTGLLCFADVLQSIEHEYANQLRSALRERDEALGLARFNLRMADRVFESALEGIMVTDRH 207

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYE 482
                       + G     + G     L       +    F   L   +    G  Q E
Sbjct: 208 AKIERVNQAFTRLTGYTEDEVVGRNPGLLSSGRQTPD----FYKQLWHSLTTD-GHWQGE 262

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              R    +     + I  + +S  +I  Y  I +DIT+++++ E +   A  D LT + 
Sbjct: 263 IWNRRKAGELFLEYLTITSIRDSESEISHYAAIFSDITQRRQAEERLGYLATHDVLTNLA 322

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F +RLT  +  +      +  VM +D+D++K +ND LG   GD+VL  +  RI   
Sbjct: 323 NRMLFEERLTHAIVHAKRFGR-KVAVMYLDLDRFKLVNDTLGHNAGDEVLKMVAERIVAN 381

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D +AR+ G+ F ++L   ++   +   A  +   +   I++ +R+I VT SIG + 
Sbjct: 382 VRANDTVARMGGDEFALVLEEVDDVRDVGRVARKLLDEVGRAIDIGDRQIFVTPSIGISI 441

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSEL 720
           +      + +++  A+ AMY AK RG N  + F      S    ++   +L  A+E +E 
Sbjct: 442 YPDDGTEAEDLILLADQAMYGAKSRGRNVFQFFESKMTSSAIEQLETLGELHRALEQNEF 501

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P   L    IVG+EAL++W HP  G +   +F+ +AE   +   I  ++L    R
Sbjct: 502 RLFYQPQYDLASGRIVGVEALLRWLHPSRGLVPPRDFIGLAERSALTVPIGRWVLHEACR 561

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W D+       + +N++++    +     +  ++S+T      ++L   ES+ M  
Sbjct: 562 QARRWLDEGFEFG-RVSVNVSARQCFTDHFLSDLTTILSETALPAEYLQLELLESMAMNT 620

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            E   +LL  L   GISL +DDFGT  S L YL  +P DT+K + S +T   S     AI
Sbjct: 621 REEIGILLRELATRGISLAIDDFGTGYSSLVYLKDLPVDTLKIDQSFLTDCGSGSTDDAI 680

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +R+I+ M + +   ++ + +     +  L  +GC   Q    A P   + ++
Sbjct: 681 VRAIVAMGRALGLDVVMEGVETAKQLAFLQEIGCHQGQGFLFARPQPADQLV 732


>gi|171058030|ref|YP_001790379.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775475|gb|ACB33614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 898

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 155/585 (26%), Positives = 260/585 (44%), Gaps = 17/585 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     +Q +         +       +     S + +   D              I G 
Sbjct: 324 LRSVGTVQDITERRQAEDEMRLA----ASVFDNSLNAILIADANGRIRKVNRAFTAITGY 379

Query: 441 ASGSMHG-PIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            +    G   R     +H           L +      G+   E   +  D +   +   
Sbjct: 380 TAEEAVGDTPRLMKSGLHSPGFYGEMWAELQAC-----GKWDGELMNQCKDGRIISVRES 434

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I  + +  G +  YIGI +DITEQK S + I   A+ D LTG+PNR   +DR    L  +
Sbjct: 435 IAAVHDPAGAVAYYIGIFHDITEQKASAQRIHQLAYYDVLTGLPNRALLMDRCQHELARA 494

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             D   R  V+ +D+D++K IND LG  VGD +L ++ +R+   L+  D +ARL G+ F 
Sbjct: 495 MRDGK-RLAVLFLDLDRFKHINDSLGHPVGDGLLRAVAQRLQGTLRDSDTIARLGGDEFI 553

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L     S  +   A  +  +   P  L E  ++V AS+G + +       + + K A+
Sbjct: 554 VLLEHVETSAGVELAARRILDAFRDPFQLEEHRLSVGASVGISLFPDHASDITSLFKYAD 613

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+Y AK  G      F         DR+ ++ +L  A+E ++L L Y P+  L D  + 
Sbjct: 614 LALYQAKAAGRGDFRFFEPRFNDAAKDRMRLERELRQALERNQLSLQYQPVFALPDGRLA 673

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G++S + F+ IAE+  +I  I  ++LE+  R    W D    P + I
Sbjct: 674 GAEALLRWTHPALGSVSPATFIPIAEDSGLIVPIGAWVLEQACRQARQWLDAGLDPGV-I 732

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   +  N+L + + +++++T      ++L  SES +  + E     LG+LR +G+
Sbjct: 733 AVNLSGMQIQRNDLVDTVSSVLARTGLPACHLELEISESYITRHAESDLQRLGQLRALGV 792

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
           S+ +DDFGT  + L +L  +P   +K + S M          A+ R+II +   +  T++
Sbjct: 793 SMAIDDFGTGQTSLGHLRRLPVSKLKIDRSFMADIEHDAAAAAVTRAIIGLGHGLGLTVV 852

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           A+ +        L    CD +Q    A PL       L     PL
Sbjct: 853 AEGVESAAQESALVAQHCDLVQGFRYARPLDAPVFAALCARPQPL 897



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-----GSMH 446
                 Q + +   R + A   +    WD       +T + ++A I  + +         
Sbjct: 198 ELKRQEQHLRASDARFNQAEHVARVGSWDLVPHTGAMTWSVEMARIFDITAQPHASHDAA 257

Query: 447 G----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G       ++L  +H ++R        +     R     EFR+  +  +  W+ +R    
Sbjct: 258 GASVYSQADFLAAVHPDERARVVAAQAAASAEHRPC-DIEFRIVTSGGKMKWVHLRSTTF 316

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              +G  LR +G   DITE++++ + +   A
Sbjct: 317 HGDDGRPLRSVGTVQDITERRQAEDEMRLAA 347



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 52/191 (27%), Gaps = 23/191 (12%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
             +  +    L G      + +     ++ L   +  +   S   ++   +   G +V  
Sbjct: 35  LANAALESQLLAGSEQAESMFVQLERQRNALRDAHGREQALSAFAQR--VMDTVGGVVIA 92

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF--------- 471
            D               L   +    G   + L  +H  D       L            
Sbjct: 93  LDPQGRLRQRNRHCQNDL---APLPEGSSVDLL--LHPQDLAALEAALPHLPWQVHSVLF 147

Query: 472 -VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R+G  + E +    D  + + ++    + ++       +    DI+E K+  + + 
Sbjct: 148 ETVRRQGGYRAEHQFAMRDGSYRYHLVEAAMLYSAQNKEEGAVLSGTDISELKRQEQHLR 207

Query: 531 ------CNAFQ 535
                   A  
Sbjct: 208 ASDARFNQAEH 218


>gi|331014835|gb|EGH94891.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 643

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 153/666 (22%), Positives = 288/666 (43%), Gaps = 40/666 (6%)

Query: 303 YPMVTASIARITLASIVLYYTYFI-IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
                A    +    + + +     I   +   E A L     +  + W +   + I   
Sbjct: 3   DYSRGALRTAVLYGLLSILWFMACDILLPLFIDEPARLAFCHQMAGYAWALLSAVTI--F 60

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIV 418
           +  D ++  + G                        +    D +R  LA      + + V
Sbjct: 61  VARDRLRKIIGGEAHF--------------------ERQQDDYDRLRLAEAVFDSTREGV 100

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
              D     V        I G  +  + G     +    H    + +R +  S +    G
Sbjct: 101 LVSDAQGRIVHVNRAFVDITGYQAEEVLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VG 156

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
           +   E   R    + +     IR +   +G +  ++ + +DIT  K+S   +      D 
Sbjct: 157 QWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQLKHFVAVFSDITAIKRSERELAQLIHFDA 216

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PNR    DR++  L  +         +++ID+D +K IND LG  VGDDVL ++  
Sbjct: 217 LTDLPNRLLLTDRISQALTSARASKRG-CALLLIDLDHFKNINDSLGHNVGDDVLKAVAE 275

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+  L      LAR  G+ F +++ + +  ++ A  A  + + +  P  +   ++ VTAS
Sbjct: 276 RLKGLCGNETTLARPGGDEFALLVKNCSQVVRAAALAQQVSEVLKAPFVIAAHQLFVTAS 335

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV 715
           +G + +     ++ ++L+NA+ A++ AK  G +    +     +    RV +  +L  A+
Sbjct: 336 MGISLYPGDAQSAEQLLRNADSALFKAKSEGRDCYALYTEELTAHAQQRVQLAGELRQAI 395

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  EL + Y P+  L+   + G+EAL++W HP  G +S  EF+ IAE+  +I  I+ ++L
Sbjct: 396 EQGELRVFYQPVHDLITRSVCGVEALVRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVL 455

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               R + +W  +  +P  F+ +N++S+     +L   +  ++      P+ ++L  +ES
Sbjct: 456 NTACRQMRAWLTE-GVPIAFVAVNVSSRLFSRGDLDRQVAQVLHDIGLDPAFLELEVTES 514

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            VM +PE++   L RLR++G+SL +DDFGT  S L  L  +P   +K +   + G     
Sbjct: 515 AVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLKRMPVQKLKIDQGFVAGLPGDG 574

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             IAI+R++I +  ++   ++A+ I        L   GC   Q    A P+  + ++   
Sbjct: 575 DDIAIVRAVIALGASLGMRVLAEGIEQASQAAFLLENGCQLGQGYWFARPMAAH-LIDW- 632

Query: 954 KERFPL 959
               P+
Sbjct: 633 -SHAPV 637


>gi|186472629|ref|YP_001859971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia phymatum STM815]
 gi|184194961|gb|ACC72925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Burkholderia phymatum STM815]
          Length = 915

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/572 (25%), Positives = 262/572 (45%), Gaps = 18/572 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
               +  +        +A +   S + +   D     +          G  +  + G   
Sbjct: 336 ASKMTAEVRESEAELRIAAVAFDSLEGMMVTDADGTILRVNSAFTKCTGYTADDVIGRNP 395

Query: 451 NWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             L    H  D   FR + ++   +R G  Q E   R  + + +   + I  +   +G++
Sbjct: 396 RLLSSGRH--DAAFFRDMWETI--HRVGGWQGEIWDRRKNGEIYPKWLTITAVKAVDGNV 451

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+G   DITE+K + E I   AF D LT +PNR    DRL  ++ LSA + +    ++
Sbjct: 452 THYVGTHYDITERKLAEEQIKELAFFDALTHLPNRTLLRDRLKQVIALSAQN-HTHGALL 510

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----E 624
            +D+D +K +ND LG   GD +L  +  R+   ++  D +AR+ G+ F I+L       +
Sbjct: 511 FVDLDNFKTLNDTLGHDKGDLLLGQVAVRLLGSVREGDTVARMGGDEFVIVLSDLSRNRD 570

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             + +    A  +  +++ P  L   E   TASIG   +T  + +  E+LK ++LAMY +
Sbjct: 571 EAASETEGAAEKVLTALSRPYYLAGTEFRTTASIGATLFTGHETSIDELLKQSDLAMYKS 630

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N +  F  +      +R  ++  L  A++  +L + Y   + L    + G EAL+
Sbjct: 631 KESGRNAICFFDPAMQTVVMERAALEAALRRAIDEDQLLVHYQAQV-LNGNRVTGAEALV 689

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +  +EF+ +AEE  +I A+   +L+   R +  W  + +   + I +N+++
Sbjct: 690 RWQHPQHGLVPPAEFIPLAEETGLILALGDRVLDTACRQLAQWSLRPDRAHLSIAVNVSA 749

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L +N     +   +++T   PSR+KL  +ESV++ N E     +  LR  G+  +LDD
Sbjct: 750 QQLRENSFVTSVLEALARTGADPSRLKLELTESVLVDNVEDIIRKMTLLRTKGVVFSLDD 809

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S LSYL  +P   +K + S +           I R+I+ +A+++   +IA+ +  
Sbjct: 810 FGVGYSSLSYLKRLPLGQLKIDRSFVRDVLDDPNDAVIARAIVALAQSLGLGVIAEGVET 869

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   + L   GC   Q      PL        
Sbjct: 870 QAQRQFLADAGCHAYQGYLFCRPLPIEDFEAF 901


>gi|257057649|ref|YP_003135481.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256587521|gb|ACU98654.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Saccharomonospora viridis DSM 43017]
          Length = 919

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 155/561 (27%), Positives = 263/561 (46%), Gaps = 15/561 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              +   R    V    + V   D      +  P    ILGL   +M G      P ++ 
Sbjct: 362 ARRTVERRYRTVVTALDEGVVVIDENELVGSANPAAGRILGLPVEAMIGCSPALFP-LYD 420

Query: 459 NDRDNFR-TILDSFVGYRRGRLQY--EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                   +   S +  R G   +    R R  D Q+ W+ +  RP+ +        +  
Sbjct: 421 ESGARVPPSEYPSALTRRTGHASHGRVLRARRPDGQWVWLSMSCRPLDSDKTPPHEVVVS 480

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE++   E +  +A  D LT + NR   L RL  +L            V+ ID+DK
Sbjct: 481 FTDITERRAIGERLEHDATHDPLTNLANRTLILQRLEEML---RRSGGRPVCVLFIDLDK 537

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG  +GD+VL     R+   ++  D++ RL G+ F I+     +  +I     
Sbjct: 538 FKVINDSLGHGIGDEVLRIAGERLKNCVRQGDLVGRLGGDEFAIVASDMAHDSQIQALIG 597

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            +R+++  P+ +  R + + ASIG  +     + ++ ++L++A++AMY AK RG    E 
Sbjct: 598 RIRRALTEPVVVEGRRLRIDASIGVVTTHADDERSAEDLLRDADVAMYQAKTRGRGRYEF 657

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F V        ++ +++DL  +V   +L++ Y P++ L  ++ V +E L++WDHP  G I
Sbjct: 658 FDVELRERVQRQLRLEQDLRESVRGGQLWVAYQPVVDLRTQQRVAVEGLLRWDHPVHGRI 717

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE  +I  I   ML    R++ S R  +      + +N++++ L D  +  
Sbjct: 718 SPGEFIPLAEESDLINLIGGHMLRTATRELASRRRHSG-VRTQLAVNVSARQLDDGSVVS 776

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   +  T   P  + L  +ES +M  PE +  +L  LR +G+ L +DDFGT  S L+ 
Sbjct: 777 AVNEALRATGLPPGELCLEITESALMQEPEAAADVLTALRDLGVRLAIDDFGTGYSSLAQ 836

Query: 873 LGYIPFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           L  +P DT+K + S + G          AI++ II MA ++  T++A+    E  I  L 
Sbjct: 837 LWKLPLDTLKIDRSFVAGLDGPNHPDAEAIIKGIITMAHSMGLTVVAEGTENERQIAILR 896

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
            +GCD  Q  H+  P   + +
Sbjct: 897 ELGCDQAQGFHLGKPAPAHEV 917



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 6/151 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLAS 442
             +   V      ++ +    +R  L V  S + +         V   P  A  +   + 
Sbjct: 121 VGIATDVTERFNNTRELDDLADRYRLLVELSPEGI-CVHQDGKLVYINPAAARFVKAASP 179

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G       ++           + S           E R+R  D     +      +
Sbjct: 180 TQLLGRPIT--DFVRPAAVPELLRRISSLREPGEATEPTEVRLRTLDGGSLCIESVSVRI 237

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   G     + I  DIT QK +   +   A
Sbjct: 238 TWR-GKPAYQV-IMRDITAQKAAQAALRYQA 266



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W  D++   VT +P +A ILG+ + +     +  L  +           +          
Sbjct: 33  WSVDLLDYDVTWSPRLAEILGVDTQNADAVRQRLLDLLEPLTVAARNYPVW-------HN 85

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNA 533
              E        +  W     R   N+  G + R +GIA D+TE+  +   +   A
Sbjct: 86  FDLEQCHTTPGGETRWTRFLARAQGNAATGKVERLVGIATDVTERFNNTRELDDLA 141



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 17/143 (11%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q ++      +   +    Q+  V  + D +          +  P   T+ G +     G
Sbjct: 246 QVIMRDITAQKAAQAALRYQAALVRHASDAIIATTSDGMVTSWNPAAETVYGHSEDQALG 305

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              + L  + ++          + +    G ++ E R   AD     + +   PM +   
Sbjct: 306 RPVSELVGVTLD---------PATIVAEGGVVEAEHR--KADGSALTVRVSASPMDD--- 351

Query: 508 DILRYIGIANDITEQKKSLEGIL 530
               Y+ +  D T ++       
Sbjct: 352 ---GYVLMCADETARRTVERRYR 371


>gi|229099781|ref|ZP_04230706.1| Sensory box protein [Bacillus cereus Rock3-29]
 gi|228683670|gb|EEL37623.1| Sensory box protein [Bacillus cereus Rock3-29]
          Length = 892

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 183/819 (22%), Positives = 334/819 (40%), Gaps = 70/819 (8%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
            + I L +  +     +L    A+ + ++ YI +  GF  K +   S   L   +   I 
Sbjct: 78  AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFAIKFIKHYSIRGLAQFSFDSIF 137

Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310
           +    I F   + L  + +H          G      L   +         Y     + I
Sbjct: 138 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 197

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
              T+  +  Y   F +  G+K       LI    ++ I    +   + K + ++     
Sbjct: 198 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 257

Query: 371 LVGGLVLIVI-------------------------------------------------L 381
                V  ++                                                  
Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 317

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q        +  +    +R         D V+  ++      +     ++    
Sbjct: 318 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGVFQQSNTACESLF--T 375

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +        + L +I   D D  +  L      R   L  E R +  +  ++++ I + P
Sbjct: 376 AYYCEVASYSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L TIL+ + T 
Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 492

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    VM +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L
Sbjct: 493 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +    A  A  +   +  P  + + E++VT SIG A +       +E++KNA+LAM
Sbjct: 552 PDMYSEKSAAFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADLAM 611

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G E
Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIEFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N
Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 730

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI ++
Sbjct: 731 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ 
Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 850

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  E   K L    CD+IQ   ++ P+    +  LL ++
Sbjct: 851 VETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWMLLHKK 889


>gi|225867278|ref|YP_002752656.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|229187527|ref|ZP_04314667.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
 gi|225789174|gb|ACO29391.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|228595894|gb|EEK53574.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
          Length = 909

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 165/870 (18%), Positives = 346/870 (39%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274
            + +   + +         L  L+ +      +     ++       + L+      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKR-PFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  + 
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLN 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQKNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|220934069|ref|YP_002512968.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995379|gb|ACL71981.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 655

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/623 (23%), Positives = 283/623 (45%), Gaps = 20/623 (3%)

Query: 347 IFIWFIGLWMAITKRLDN----DIIQPALVGGLVLIVILIGF-------TVIQHVLATGY 395
           +  W   L   ++ ++       +    L G L L+   +G         V Q   A   
Sbjct: 25  LVPWGQALGADLSGQIQGTADVWLWPLILGGFLALLFASLGIYNRALRRQVAQQTRALRE 84

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +  + S+ +     +  S       D         P +   L  ++  +      +   
Sbjct: 85  ANTTLRSERDFSQSIIQASPAFFVAIDTRHRVRMMNPAMLRALDRSAREVRDRP--FADL 142

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               D       +   +      +Q+E  V A D +   +      + N  G +  +  +
Sbjct: 143 CVPADEQEALHAVFQHMLRTGHPIQHESHVVARDGERLLVEWHGNTVRNGQGQVEYFFAL 202

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE++++   +   A  D LTG+PNR    +R++  LD++   D  +  ++ +D+D+
Sbjct: 203 GLDITERRRTQAQLEHIAHYDLLTGLPNRTLLQNRISHALDVARRRDR-QVAILFLDLDR 261

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG A GD++L  ++ R+   L+  D LAR  G+ F +++   ++   ++  A 
Sbjct: 262 FKVVNDSLGHAYGDELLRQVSDRLRRRLREEDTLARWGGDEFIVLVDEVDDPQGLSLLAE 321

Query: 636 AMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            +   +A P  L   +E+ V  SIG + +     ++ +++  A+ AMY AK +G ++ + 
Sbjct: 322 GILAELAEPYRLSNGQEVFVGGSIGISLYPQDGRSAEQLIMKADTAMYQAKDQGRSNYQF 381

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +    +   +DR+ ++  L  A+E  E  L Y P +R  D+ ++G+EAL++W HP  G  
Sbjct: 382 YTSALTLAANDRLALETSLRHALEREEFTLHYQPRVRTQDDVMIGMEALVRWHHPDKGLT 441

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+ +AEE  +I  + L++L    R   +W       PI + +N++ + L   +L  
Sbjct: 442 APDAFIPMAEETGLITPLGLWVLRTACRQAQTWMRLYG-EPIHMAVNLSMRQLRQPDLVS 500

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A++  T    S ++L  +ESV+M     +   L  L+ +G+ L +DDFGT  S L+Y
Sbjct: 501 QIDAILRDTGLPASSLELELTESVLMAGDGHTLTALAELKALGVRLAIDDFGTGYSSLAY 560

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S ++        +AI  +II MA+ +   ++A+ +     +  L + 
Sbjct: 561 LKRLPIDALKIDRSFVSDIPHDASDMAIASTIIAMARTLGLEVVAEGVETPEQLAFLKKE 620

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
           GCD  Q    + P+   ++   L
Sbjct: 621 GCDSYQGFGFSPPVDAQAMTLWL 643


>gi|121592439|ref|YP_984335.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax sp. JS42]
 gi|120604519|gb|ABM40259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax sp. JS42]
          Length = 669

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 140/570 (24%), Positives = 249/570 (43%), Gaps = 19/570 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            +Q   A         +D +R   Q+  +  + D +   D+             + G + 
Sbjct: 85  TLQIFAARAAAELQRQTDDQRIRQQASLLDKARDAIIVRDLEHRITFWNEGAERMYGWSR 144

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     L Y +  D       +        G    E        +      R   +
Sbjct: 145 EEVLGRSIATLLYQNPEDFLRATQQVMQH-----GVWSGEILQCDRAGRTLEAEGRWTLV 199

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            N  G+    + I  DI  +K     I   AF D LT +PNR   LDR+   L  +   +
Sbjct: 200 RNDRGEPESVLAINADIGTRKHQEREIQRLAFFDPLTHLPNRVQLLDRVDQALAKAQRLE 259

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL- 621
                ++ ID+D +K +ND LG   GD++L  + +R+   ++  D +ARL G+ F +++ 
Sbjct: 260 QG-GALLFIDLDNFKTLNDTLGHDQGDELLQIVAQRLNTCVRSADTVARLGGDEFVVLVE 318

Query: 622 ----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
                S+  + +       +   ++ P  L   +   T SIG A +  +  T  E+LK A
Sbjct: 319 QLSAHSDTLAEQAGAVGEKILAVLSAPYALTGYQHRSTPSIGIALFNHAPTTVGELLKQA 378

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY AK  G N +  F  S   +  +R  ++ DL  A+   E  L Y P I      I
Sbjct: 379 DLAMYQAKTAGRNTLRFFNPSMQHAVAERASLEADLRNALAQKEFLLHYQPQINAR-GAI 437

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EAL++W HP+ G +S  +F+ +AEE  ++  +  ++L      +  W+    + P+ 
Sbjct: 438 VGVEALLRWAHPRRGMVSPGQFIPLAEETGLVLPLGHWVLHTACSVLADWQRVPALAPLT 497

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++S+   D    + +  +++ T    S++KL  +ES+++ +   +   +  LR +G
Sbjct: 498 MAVNVSSRQFRDAGFVDDVAGVLAATGAPASQLKLELTESLLVEDLAATIATMAALRALG 557

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           +  +LDDFGT  S L+YL  +P   +K + S +          AI+R+II +A ++   +
Sbjct: 558 VGFSLDDFGTGYSSLAYLKRMPLGQLKIDQSFVRDLLTDPNDAAIVRTIIGLAASLGLEV 617

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           IA+ +        L   GC   Q    + P
Sbjct: 618 IAEGVETSAQRDWLAHAGCAVYQGYFFSRP 647


>gi|119775539|ref|YP_928279.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119768039|gb|ABM00610.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 751

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 154/562 (27%), Positives = 265/562 (47%), Gaps = 16/562 (2%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457
           +  E+  L       + + V   D             TI G +   + G     L    H
Sbjct: 195 AAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDEVIGKTPKLLNSGRH 254

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +RD F  +  +      G    E   R  +         I  +   +G +  ++ + +
Sbjct: 255 --ERDFFENLWRALKTQ--GHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQVRCFVAVFS 310

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+  K++   +   A+ D LT +PNR          + L+A +   R  +++ID+D +K
Sbjct: 311 DISLLKQTEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAA-NRKTRLALLLIDVDLFK 369

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G   GD VL+SL+ R+  LL   D LAR+ G+ F  +L        I     A+
Sbjct: 370 HINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIGGDEFV-LLTQVRRRDDIPVILSAI 428

Query: 638 RKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +++     +      + ++ASIG A +         +LKNA+ AMY AK +G N    + 
Sbjct: 429 QRAFDTSFDTSEGESVRLSASIGIAVYPDDGDNPDTLLKNADAAMYRAKQQGRNRHAFYT 488

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +    ++ ++  L  AV+NS L LVY P I L   +++G+EAL +W   + G +S 
Sbjct: 489 EQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRKLIGVEALCRWTDHELGVVSP 548

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ +AE + ++  I L++L+   R    WRDQ   P   + +N++   L  +   + +
Sbjct: 549 AEFIPVAESIGLMPEIGLWVLKEACRQARIWRDQGLNPG-RMAVNVSGSQLTGDNFADSV 607

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++++T  SP  ++L  +ESVV+ NP  +   + +LR +G+SL LDDFGT  S LSYL 
Sbjct: 608 ARVLTQTGLSPDALELEITESVVLDNPASAIDTMDKLRGMGVSLALDDFGTGYSSLSYLR 667

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P + +K + S +      +   AI  +II M + ++  +IA+ +  E   + L R+GC
Sbjct: 668 KLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLGVIAEGVENETQAEFLLRLGC 727

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
              Q    A PL  + + +LL+
Sbjct: 728 TEAQGYLFARPLLASELKQLLQ 749



 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 9/139 (6%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             A G    G+          +    + +W  D                 L+   +    
Sbjct: 70  AAALGGGESGLLQSF------MDAFDEHIWIKDAEGRYRFINQSTLVSWDLSPAQILSRK 123

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +  +    +       V      +  E   R+ D    W+     PM + +G +
Sbjct: 124 DAE---VFPDRVSEYTDTDLKAVKEGHPIVVAECIDRSLDKGNIWLETIKAPMYDMDGRL 180

Query: 510 LRYIGIANDITEQKKSLEG 528
           L  IG   DI   K + E 
Sbjct: 181 LGVIGTTRDIARYKAAEEQ 199


>gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 705

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 139/585 (23%), Positives = 262/585 (44%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H +      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKSHSMILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEMVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT++K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITQRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A     +   + +++D +K IN+  G  +GD VL+ ++ R+ E +   D L R+ G
Sbjct: 297 LTQAAVS-RWKLATLTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECINASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +RK++ +P  +  + I +TASIG A +      + E++
Sbjct: 356 DQFALILMIRVGQPDTRQTLERIRKALRVPFMVEGQSIVMTASIGIALYPEDGEDARELV 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  AK  G +    +          R+ ++  L  AVE     +VY P + L+ 
Sbjct: 416 RHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVEKQAFEIVYQPKLNLVT 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I GLEAL++W  P    +S + F+ + E L +I  +  ++++R+   I  W+      
Sbjct: 476 GRICGLEALLRWPRPGQQGVSPAVFVPVLESLGLIGEVGNWVVDRVCAQIAHWQRSGLGL 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++ + + ++ L   ++  ++    +P  +++  +ES +M N   +   L  LR
Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTSHRVAPQWLEVELTESSLMENTSHTIATLETLR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A ++ 
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLG 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L  
Sbjct: 655 LKVIAEGVETPEQLAFLRDNQCDQIQGYLISKPLPLAELETFLSA 699


>gi|238790257|ref|ZP_04634031.1| Sensory box-containing diguanylate cyclase [Yersinia frederiksenii
           ATCC 33641]
 gi|238721607|gb|EEQ13273.1| Sensory box-containing diguanylate cyclase [Yersinia frederiksenii
           ATCC 33641]
          Length = 854

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 140/580 (24%), Positives = 267/580 (46%), Gaps = 17/580 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    +            + +  ER       + D +W+ D        +    TI GL
Sbjct: 282 LVLRRAMSEARIADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGL 341

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +     G   + L      D    R+ L  + +   R  LQ  +   +A        I  
Sbjct: 342 SVEHWLGRNLDSLLNC---DIIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYA 396

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +P+   + + + + G A+DIT + ++ E I   +  D LTG+PNR    + L   L   A
Sbjct: 397 KPII-KDTNTIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRNLA 455

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +    ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +
Sbjct: 456 AAPH-PLVILNVDLDKFKPVNDTYGHVTGDLVLHQVSERLRSCLRDQDLVARQGGDEFIL 514

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I+    +  +I      +   I  P  +  ++I + ASIG A      + + E+L+ A++
Sbjct: 515 IITGLASIKEIEQLCARVIARIESPYVINGQDIYIGASIGIALAPQDSMHAEELLRFADI 574

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK+ G N    +             ++  L  AV+++E  L Y P  R+   ++ G
Sbjct: 575 AMYEAKNSGRNQWSFYSSEMNERLMQRSELERFLRQAVKHNEFSLYYQPRYRIEGTQLTG 634

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP  G +   +F+ +AEE  +I AI+ + + +  +D  +W      P + I 
Sbjct: 635 AEALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDASTWP-----PSLIIS 689

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI++ +     L E ++ ++  T     R++L  +E +++ + + +   +  L+ +G+ 
Sbjct: 690 VNISAIEFRSQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKTMMALKTLGVR 749

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ A
Sbjct: 750 LSMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAQSHEGQSIVEGIINLGHALSMTVTA 809

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +     ++ L  + CD +Q   +  P+  N +  L++ 
Sbjct: 810 EGVETAEQLEYLQTLMCDEVQGYLLGKPMKLNDLSVLIRN 849


>gi|256823240|ref|YP_003147203.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256796779|gb|ACV27435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 855

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 152/593 (25%), Positives = 286/593 (48%), Gaps = 13/593 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           + + AL+ GL +IV+++    I         ++ +     R +  +  S  +++      
Sbjct: 264 LWKWALIIGLGMIVLMLCINGIL-RWQVRKRTRLLVETNVRFNHLLKASPVVLYQLKQDG 322

Query: 426 ---DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                V  + ++  + G     ++     W+  ++  DR               G + +E
Sbjct: 323 VGYKPVWVSKNVKRLFGYEPEQLY-SHDWWIGVLYEEDRQKTLDQFKEIF--ITGHMVHE 379

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           +RVR A+    ++    + +  SN      +G  +D+T+  +  + +   +  D LT +P
Sbjct: 380 YRVRDAEGNTRYIRDERQLIPQSNHSENEIVGTWSDLTDVYEREDELKFLSHYDPLTHLP 439

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ   +R+   ++ S         ++ IDID++KKIN+ L   VGD V+  +  R+  +
Sbjct: 440 NRQKLEERIEESIERSDELKEC-FAILSIDIDRFKKINETLSYQVGDAVIARIAERLKHI 498

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L   D+LAR+ G+ F  ++  + +  K++  A  + K  A+P+ + E E+ VTASIG A 
Sbjct: 499 LNVDDVLARVGGDDFVFVINDKVDVKKVSSIARKVLKRFAVPLRIDEHELMVTASIGIAM 558

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSEL 720
           +         +LKNAE+A Y AK +G N  E F           +M++  L +AVE +EL
Sbjct: 559 FPEDGRDPDTLLKNAEIARYSAKDKGRNSFEFFNDQLSEGMHENLMLESALRMAVERNEL 618

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P++   D  +VG+EALI+W HP  G I   +F+ +AEE  +I  I L++L    R
Sbjct: 619 VLHYQPLVSFNDFTVVGVEALIRWQHPIQGLIPPYKFIPLAEETGIIGDIGLWVLREACR 678

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            ++ W            +NI+ + +    L + +++++ +T  +  R+ L  +ES +M +
Sbjct: 679 QMVEWDKAGLNVA-RASVNISVQQIETGLLPKQVESVLKETGLAAERLYLELTESTIMQD 737

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
           P+++ L +   +K+G+ L +DDFGT  S ++YL  +P D +K + S +           I
Sbjct: 738 PQQASLAMTEFQKMGVKLAVDDFGTGYSSMAYLKRLPLDRLKIDRSFIKDIGADTNDEVI 797

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++I+ +AK++    +A+ +  E   + L  +GCD  Q    + P+    +  
Sbjct: 798 CKAIVQLAKSLGLETVAEGVEEESQAEFLKGLGCDVAQGYLYSKPVPALELTA 850


>gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 705

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 139/584 (23%), Positives = 262/584 (44%), Gaps = 12/584 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H +      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKSHSMILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT++K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITQRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A     +   + +++D +K IN+  G  +GD VL+ ++ R+ E +   D L R+ G
Sbjct: 297 LTQAAVS-RWKLATLTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECINASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +RK++ +P  +  + I +TASIG A +      + E++
Sbjct: 356 DQFALILMIRVGQPDTRQTLERIRKALRVPFMVEGQSIVMTASIGIALYPEDGEDARELV 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  AK  G +    +          R+ ++  L  AVE     +VY P + L+ 
Sbjct: 416 RHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVEKQAFEIVYQPKLNLVT 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I GLEAL++W  P    +S + F+ + E L +I  +  ++++R+   I  W+      
Sbjct: 476 GRICGLEALLRWPRPGQQGVSPAVFVPVLESLGLIGEVGNWVVDRVCAQIAHWQRSGLGL 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++ + + ++ L   ++  ++    +P  +++  +ES +M N   +   L  LR
Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTSHRVAPQWLEVELTESSLMENTSHTIATLETLR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A ++ 
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLG 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +IA+ +     +  L    CD IQ   ++ PL    +   L 
Sbjct: 655 LKVIAEGVETPEQLAFLRDNQCDQIQGYLISKPLPLAELETFLS 698


>gi|307824661|ref|ZP_07654885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307734315|gb|EFO05168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1028

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 282/586 (48%), Gaps = 19/586 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            G TV+Q V+      +   +D    ++A+  S + +   D  +  +        I G A+
Sbjct: 438  GKTVLQAVVRDISERKQAEADLRIAAIALE-SLEAIAITDANQVILKVNQAFTRITGYAA 496

Query: 443  GSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                G        +  +D     F   +   +  R    Q E   R  + + +   + I 
Sbjct: 497  EEAIGQTPG---RLLKSDCQSAQFYQAMWKRL-NRDKCWQGEILNRRKNGEVYPQWLSII 552

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              +     +  Y+   +DI+++K++ E I   AF D LT +PNR+   DRL   L  SA 
Sbjct: 553  AATVEGKQVTHYVATFSDISQKKQAEETIHNLAFYDPLTDLPNRRLMQDRLQQALAFSAR 612

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              N    ++ ID+D +K++ND  G  +GD +L+ +  R+   ++  D ++RL G+ F II
Sbjct: 613  HHN-HGAILFIDLDNFKELNDTKGHHIGDLLLIEIATRMQACVRADDTVSRLGGDEFLII 671

Query: 621  LISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            L   + + + A       A  +R +I  P +L   E   ++SIG + + + ++T+ E+LK
Sbjct: 672  LGELSVAAEEAAVQAETVAEKIRAAIDQPFDLQGHEYHSSSSIGISLFLNHELTADELLK 731

Query: 676  NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
             +++AMY AK  G N +  F  ++  +  +   ++ DL  A+ +++L L Y   +     
Sbjct: 732  RSDIAMYQAKRSGRNAIRFFDPATHAAMEIRIALEADLRRALPDNQLKLYYQMQVD-NLG 790

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I G EAL++W HP+ G +S ++F+ +AE+  +I  I L++LE     + +W    ++  
Sbjct: 791  AIFGAEALLRWQHPEQGMVSPAQFIPLAEDTGLIVPIGLWVLETACSQLKAWELDPDLSY 850

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + + +N+++     +   + + AL++KT   P ++KL  +ES+V+G+   +   +  L+K
Sbjct: 851  LHLAVNVSACQFHQSGFVDQVSALLTKTAIDPDKLKLELTESLVLGDINETIFKMQALKK 910

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
            IG+  ++DDFGT  S L+YL  +P D +K + S +           I+++II MA N+  
Sbjct: 911  IGVRFSIDDFGTGYSSLAYLTQLPLDQLKIDQSFVRNVAIKPTDAVIVQTIIGMATNLGI 970

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956
             +IA+ +  E     L   GC   Q      P+         +++ 
Sbjct: 971  EVIAEGVETEEQRDFLESNGCFTYQGFLFGKPVPVEEFESAFIQKH 1016



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 20/313 (6%)

Query: 227 VVLGYISIDFGFLSKLVN-LPSGELLIWRACSEIALSSSLIIFLF----MYLHWNRWHAK 281
            V+G + +     +   + +    +  W     + L + +++F           + W  +
Sbjct: 31  AVVGNVLVALILAAMQWSIVAPPAVTGWLMLLMVTLGARMLLFFAHRRGAPGDDSVWLQR 90

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
              I+ + I  +  L  +  + P        +T A   +          +      V  +
Sbjct: 91  F-RISIAAIGVVWGLASLLMFPPHDLPHQVFLTFALGGMASAAITT-LSIDRVSLLVFTL 148

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL---IGFTVIQHVLATGYFSQ 398
           PA   + +  +         L+   IQ A+   + L ++L   I     + +        
Sbjct: 149 PALTAVIVRLL---------LEGTEIQTAMSVMITLFLLLTDMISQLTYRTLRENVMLRI 199

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + S  +     V  S D +  +D+    V     +   + +    + G       +   
Sbjct: 200 SVASREQELHSLVDSSPDNIIRYDLDCRAVYVNRMMEMTVDVKPELLIGKTPMESRFDGC 259

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +N++  L   +     +   E  V A +       +R      S+G+I+       D
Sbjct: 260 IGVENYQAKLQQVISTGELQ-DIEVLVVAPNGDLRIHHVRFVAERGSDGEIMGAFAFGRD 318

Query: 519 ITEQKKSLEGILC 531
           ITEQK++ E +  
Sbjct: 319 ITEQKQADEAVRH 331


>gi|152990267|ref|YP_001355989.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422128|dbj|BAF69632.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 765

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 136/586 (23%), Positives = 265/586 (45%), Gaps = 10/586 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L +I I   + + + A   + Q I       + A   +    W++    D    +  +  
Sbjct: 184 LELIAITRAINKMLHAIHLYIQKIKQSEMHLAEAQKIANMSSWEYIKDSDTFFCSDQLYR 243

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           ILGL          ++L  I   ++  F   ++     +  + +   +      + +  +
Sbjct: 244 ILGLNMKERL-DWEHFLQMIDPQEKLRFIEEIEEAY-QKGLKFETVVKFYTPKGEKY--L 299

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +  +   +      IGIA D+TE+ K+ + +   A+ D LT +PNR SF D L   L 
Sbjct: 300 KNVIKVRKKHNRSTTIIGIAIDVTEEIKAKKQVEFLAYNDPLTSLPNRVSFQDILEK-LS 358

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A     R  ++ +DID +K +ND  G  +GD +L+ +   + E L+  D++ R+ G+ 
Sbjct: 359 KIAQRSKERFALIFLDIDNFKFVNDTYGHEIGDKLLIDIATILKETLRSSDLIFRIGGDE 418

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +++        +      +++S+A          +V+ S+G A +         + + 
Sbjct: 419 FVVLIPKVETKDSLDIVLEKIKESVAKEYRYGNINFSVSCSLGIAIFPDDSDDIETLTRY 478

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLA-VENSELYLVYHPIIRLMDE 733
           A++AMY AK  G N    F+    +         +DL  A  +  EL L + P I + + 
Sbjct: 479 ADIAMYEAKKSGKNRFVFFKEEMKKYLDHLQQTTQDLRKALKKEDELTLFFQPKIDIQNN 538

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +++G EALI+W+HP+ G ++ + F+ +AE   +I+ I+ F++++  R +  W     +  
Sbjct: 539 KVIGAEALIRWNHPQKGLLTPNVFIPVAERSDLIEKIDEFVIKKSFRHLQEWSSDKELQN 598

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I + +NI+++   + +  + +   +      PS+++L  +E++ M N   +  +L  +++
Sbjct: 599 IVLSLNISARQFRNPKFLDFLDKNLKLYNIDPSKLELEITETLSMENVSHTVNMLEAIKQ 658

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           IG  + LDDFGT  S L+YL  +PFDT+K + S +       +   I + I  +A     
Sbjct: 659 IGFQVALDDFGTGYSSLNYLKRLPFDTIKIDKSFIDDIDKDPEDYQITKIITDIAYTFRK 718

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            IIA+ +  +   + L  + C Y Q    A PL  N   + +    
Sbjct: 719 EIIAEGVETKQQERILKDLKCFYAQGYLYAKPLPLNEFKEFITSYN 764


>gi|222109246|ref|YP_002551510.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
 gi|221728690|gb|ACM31510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Acidovorax ebreus TPSY]
          Length = 1225

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 249/581 (42%), Gaps = 19/581 (3%)

Query: 375  LVLIVILIGFTVIQHVLATGYFSQGIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTT 431
              L         +Q   A         +D +R   Q+  +  + D +   D+        
Sbjct: 630  QALERSRFVSNTLQIFAARAAAELQRQTDDQRIRQQASLLDKARDAIIVRDLEHRITFWN 689

Query: 432  PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                 + G +   + G     L Y +  D       +        G    E        +
Sbjct: 690  EGAERMYGWSREEVLGRSIATLLYQNPEDFLRATQHVMQH-----GVWSGEILQCDRAGR 744

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
                  R   + N  G+    + I  DI  +K     I   AF D LT +PNR   LDR+
Sbjct: 745  TLEAEGRWTLVRNDRGEPESVLAINADIGTRKHQEREIQRLAFFDPLTHLPNRVQLLDRV 804

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               L  +   +     ++ ID+D +K +ND LG   GD++L  + +R+   ++  D +AR
Sbjct: 805  DQALAKAQRLEQG-GALLFIDLDNFKTLNDTLGHDQGDELLQIVAQRLNTCVRSADTVAR 863

Query: 612  LSGNRFGIIL-----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            L G+ F +++      S+  + +       +   ++ P  L   +   T SIG A +  +
Sbjct: 864  LGGDEFVVLVEQLSAHSDTLAEQAGAVGEKILAVLSAPYALTGYQYRSTPSIGIALFNHA 923

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              T  E+LK A+LAMY AK  G N +  F  S   +  +R  ++ DL  A+   E  L Y
Sbjct: 924  PTTVGELLKQADLAMYQAKTAGRNTLRFFNPSMQHAVAERASLEADLRNALAQKEFLLHY 983

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             P I      IVG+EAL++W HP+ G +S   F+ +AEE  ++  +  ++L      +  
Sbjct: 984  QPQINAR-GAIVGVEALLRWAHPRRGMVSPGRFIPLAEETGLVLPLGHWVLHTACSVLAD 1042

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            W+    + P+ + +N++S+   D    + +  +++ T    +++KL  +ES+++ +   +
Sbjct: 1043 WQRVPALAPLTMAVNVSSRQFRDAGFVDDVAGVLAATGAPAAQLKLELTESLLVEDLAAT 1102

Query: 845  RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
               +  LR +G+  +LDDFGT  S L+YL  +P   +K + S +          AI+R+I
Sbjct: 1103 IATMAALRALGVGFSLDDFGTGYSSLAYLKRMPLGQLKIDQSFVRDLLTDPNDAAIVRTI 1162

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            I +A ++   +IA+ +        L   GC   Q    + P
Sbjct: 1163 IGLAASLGLEVIAEGVETSAQRDWLAHAGCAVYQGYFFSRP 1203


>gi|114562745|ref|YP_750258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334038|gb|ABI71420.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 839

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 150/568 (26%), Positives = 261/568 (45%), Gaps = 12/568 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 +         +     + + V   D   +          I G +   + G    
Sbjct: 262 RNIAKHKEAQDQLILAANVFQNAVEGVVITDSNGNITEINQAFTDITGYSREEVIGQNPR 321

Query: 452 WLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            L    H   +  F  + ++ +    G+   E   R          I I  + +    I 
Sbjct: 322 MLSSGRHP--KSFFERLWNTLLVQ--GKWHGEIWNRRKHGAIFPQAITISAVFDKLNIIQ 377

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y+ +  DI+ QK++ E +   A+ D LT +PNR  F+  L   ++ S      +  ++ 
Sbjct: 378 YYVAVFADISAQKQNEEKLKNLAYFDPLTQLPNRMQFMSLLEQEVNHSHRAKK-QLAIVF 436

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DID +K IND LG  +GD++LV L +R+   L   D+LARLSG+ F ++L S   +  +
Sbjct: 437 LDIDFFKHINDSLGHVIGDEILVELAKRLSYALSDFDVLARLSGDEFVVMLPSIMGTDSV 496

Query: 631 ADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                 +R     P  L   + + +TAS+G A + S       +L+NA+ AM+ AK  G 
Sbjct: 497 TSSVDRIRSVFERPFILDNTQSVRLTASMGVAIYPSDGDDHDSLLRNADAAMHRAKLDGR 556

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+   +  S       ++ ++  L  A+ N + YLVY P ++L D    G EALI+W  P
Sbjct: 557 NNYAFYTESMTKQAVAQLKLQNALHQALVNEDFYLVYQPKLKLSDLSPSGFEALIRWSDP 616

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +GNIS +EF+ +AE++ +I  I L++L+      + W  Q  M    I +N+AS  L  
Sbjct: 617 VYGNISPAEFIPLAEKIGLIWDIGLWVLKAACLQGVEWLTQGKMFE-RISVNVASLQLKR 675

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N+  + +++++ +T      ++L  +ES +M +P+     L  L  +GI+L++DDFGT  
Sbjct: 676 NDFVDKVRSILLETGLPAKHLELEVTESCMMNDPDAIIRDLKLLGAMGIALSIDDFGTGY 735

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P D +K + S +          AI +++I +   +   IIA+ +       
Sbjct: 736 SSLNYLKKLPIDKLKIDQSFVRDIPHDVNNTAIAKAVIALGHALNLQIIAEGVETVDQAD 795

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L   GCD +Q    + P   + + + L
Sbjct: 796 FLRLNGCDLVQGYLYSKPRLPDELNEFL 823



 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 2/117 (1%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +W  D     V     +      ++  + G              + F       +     
Sbjct: 165 MWVKDANGHYVACNKSVERAWRKSTEQIVGKTD--FDLFDPRTANEFIASDKLAISNGST 222

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  E      +    W+     P+ N+ G +   IG+  +I + K++ + ++  A 
Sbjct: 223 VVVSECEEVDVNFNKVWLETIKAPIYNTQGQLTGVIGMTRNIAKHKEAQDQLILAAN 279


>gi|300692395|ref|YP_003753390.1| hypothetical protein RPSI07_2765 [Ralstonia solanacearum PSI07]
 gi|299079455|emb|CBJ52130.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia
           solanacearum PSI07]
          Length = 903

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 140/575 (24%), Positives = 259/575 (45%), Gaps = 12/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +   + ++ +    ER  L V    + +         +   P    IL     S  G  
Sbjct: 325 AVQKAHIARELQESEERYRLVVDNLTEGIVVQSADGSILACNPSARRILRAGDQSPVGAS 384

Query: 450 RNWLPY--IHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              L    +  +  +           +   R  L     +   D    W+   + P+   
Sbjct: 385 HLMLMRRSLREDGSEIPFLERPTRVVLATGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +   NDI   + + + +   A +D LTG+ NR  FL R+  +LD +ATD   
Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLSNRAYFLQRMQAVLDEAATDGR- 503

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L   
Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQV 563

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +  +IA P +    E  + ASIG A        ++ +L+ A+ AMY+A
Sbjct: 564 CSLAEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F          R  +++ L  A+   EL L + PI+  +  +IVG E L+
Sbjct: 624 KQNGRNQHRVFTAQLSQRAQRRFQLEQHLRRALSARELSLRFQPIVDAISMDIVGAEVLL 683

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   + G +S +EF+ +AE+  +I AI  ++LE+  R    WR     P  FI +N++ 
Sbjct: 684 RWHSAELGEVSPAEFIPVAEDAGLISAIGEWVLEQACRQAAHWRKTCA-PDFFIAVNLSP 742

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   +   ++++      +++  +E ++M +      +L  L  +G+ +++DD
Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +  
Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GCD +Q     +P+   +  + L+ 
Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMTAAAYEERLRR 896



 Score = 42.2 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 7/148 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRN 451
                + +    +R    V    D ++        V        +LG  ++  + G   +
Sbjct: 16  GESAPRPLPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSARDIVGRELD 74

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              ++H +     R   +  V +  G    E ++   D     + I   P+    G    
Sbjct: 75  --AFVHEDSVQLARQRREWMVEHGAGLPPVEQKLLRCDGTPVDVEILSAPV--QLGWRTA 130

Query: 512 YIGIANDITEQKKSLEG-ILCNAFQDNL 538
              +A DI ++K++ +      A    L
Sbjct: 131 VQVVARDIRQRKRTEQALRESEANYRAL 158


>gi|171057079|ref|YP_001789428.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170774524|gb|ACB32663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 790

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 159/742 (21%), Positives = 308/742 (41%), Gaps = 17/742 (2%)

Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNR 277
           L    + A ++ G I      L+    LP+  L  W   +E+ +   L   L        
Sbjct: 32  LFYRQSPAALLGGAIGALLVVLALQDALPALWLRSWLLAAELLIVGRLTTTLHYMHGGAE 91

Query: 278 WHAKVGYITFSGIACIA-ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
            H+   +   + +  IA  L   S     +    A+     +V           + G   
Sbjct: 92  RHSLARWRQLALVFTIAQGLTWGSLGLMSLAVPTAQDEALILVCLLVIVAGSAALVGTLP 151

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
            ++ +   + +    + + +  +                V + +            +   
Sbjct: 152 LLVPLFGVLTLLPITLVMALGSSGAQHFLAFCSFTFMLTVTVSLPRSMQRAIRARHSASL 211

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +Q      +R  +A   +      WD    +   +     +LGL         R+ +  +
Sbjct: 212 AQ--RDTLQRLEMAEQMAHVGHLVWDAGAAQAQLSAGAQRMLGLDGVGALEH-RDIVELV 268

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              DR+  R ++ + +   + +L+YE +V         +++     + ++G + R +   
Sbjct: 269 VPADRERVRLLIRNSLQQTQSQLRYETQVSTPAG-VRDLMVVQHLETGADGRVTRLMSTL 327

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D +E K++   +   AF D LTG+ NR  F+  L  +L            ++++D+D +
Sbjct: 328 QDTSELKQTQRELQKLAFNDPLTGLGNRAWFMQALAGMLRQGERS-----ALLMLDLDHF 382

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L    +R+  +L     LARL G+ F IIL +  +S   A  A A
Sbjct: 383 KAINDTLGHHAGDLLLGMAAQRLQRVLGDTASLARLGGDEFAIILPAIASSAAAAQQAQA 442

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +  ++  P ++   E+ V+ASIG A        +  +L+ A++AM+ AK  G    + + 
Sbjct: 443 LIDTLTRPFSVAGVEVYVSASIGIAVSPQDADDTEALLRCADVAMFDAKGLGRAGYQFYA 502

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            + S    +RV+++ DL  A+E  EL L Y P + +  + +VG EAL++W H + G +  
Sbjct: 503 AQQSERARERVLLEGDLRRAIERGELELHYQPKVDMRTDRVVGAEALLRWHHAERGMVPP 562

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIFILINIASKDLLDNELC 811
             F+ +AE+  +I  I  ++L         W   R       + I +N++ +        
Sbjct: 563 DRFIPVAEDTGLIIPIGEWVLRTACTAATHWNRTRRARGQEALKIAVNLSPRQFWSPHFV 622

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++A++ +T   P  I+L  +ES+++    +   +L  L ++G +L +DDFGT  S L 
Sbjct: 623 AMVRAVMHETGCRPEWIELEITESLLIDTRGQVSEILAELSRLGFTLAIDDFGTGYSALG 682

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P  T+K + S +    +   R +++R+I+ M  +++  ++A+ +     ++ L  
Sbjct: 683 YLTRFPISTLKIDRSFVNEVATHPARASLVRAIVAMGHSLQLELVAEGVETHEQVQVLRE 742

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
           MGC   Q      P        
Sbjct: 743 MGCQLAQGWLYGRPQARALFEA 764


>gi|94314579|ref|YP_587788.1| hypothetical protein Rmet_5660 [Cupriavidus metallidurans CH34]
 gi|93358431|gb|ABF12519.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Cupriavidus metallidurans CH34]
          Length = 839

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/580 (25%), Positives = 253/580 (43%), Gaps = 12/580 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             A     + +        LA      + D V   D+        P    + G       
Sbjct: 263 RTALHERDEALRRSNYHLRLADRVFESTLDGVMVTDLNGVIEQVNPAFTQLTGYTLDEAI 322

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G     L          ++ +         G  + E   R  + + +   + +  + N  
Sbjct: 323 GRTPRMLSS-GRQGPSFYQEMWSQLRAQ--GHWKGEIWNRRKNGELYLEHLSVSSICNQA 379

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+   Y  I +DIT ++ + E +   A  D LT +PNR  F +RL     + A   + R 
Sbjct: 380 GECTHYAAIFSDITHRRIAEERLNHLAMHDPLTDLPNRTLFSERLKQA-IIRARRASRRV 438

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K IND +G   GDD L  +  R+   ++  D +ARL G+ F I++    +
Sbjct: 439 GVLFLDLDRFKMINDTMGHGTGDDALRVIAMRLKHAVRESDTVARLGGDEFTIVVEEIED 498

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +A  A  +   +  PI+   R + VT SIG + +        ++L  A+ AMY AK 
Sbjct: 499 IRHVAHIAQVLLDVVGQPIDAAGRSVFVTPSIGISIYPDDGTDQQQLLMQADRAMYEAKQ 558

Query: 687 RGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    F         + + ++ +L  A+   E  L Y PI  L    IV +EAL++W
Sbjct: 559 EGKNTFRFFATQMTSSAMESMALECELRRALTRREFRLHYQPIYDLGSGRIVSVEALLRW 618

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G +S   F+ +AEE  ++  I  ++L    R   +W          + +N++++ 
Sbjct: 619 QHPTRGLLSPGAFIDVAEESALVVPIGAWVLREACRQGAAWLRSGFEFG-RMSVNLSARQ 677

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        +  ++S     P  ++L   ES+ M     + L+LG L + G+ L +DDFG
Sbjct: 678 IRHEHFLHDVSDVLSDAGMQPEHLQLELVESMAMTGNGVTELVLGELARRGVGLAIDDFG 737

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S  +YL  +P DTVK + S +T     E+  AILR+I+ MA+ +  T++A+ +    
Sbjct: 738 TGYSSFTYLQTLPVDTVKVDRSFLTAVIERERDGAILRAIVAMARALGLTVVAEGVENIA 797

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            ++ L  +GCD  Q   +A P    ++  L     PL+ +
Sbjct: 798 QLQFLREIGCDRAQGFLLARPGPAEALTALGNAAHPLIAS 837


>gi|319427864|gb|ADV55938.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1487

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 137/564 (24%), Positives = 260/564 (46%), Gaps = 12/564 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  + +  + A   + + V   +   +          I+G     + G   +    +
Sbjct: 925  QRLLEDEVKLLAQAFENTSEGVLILESNENIRVANHAAQQIIGSGDTDLVGLSFSQFLRM 984

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D     +   +         E  +         + + +  M  +N     Y+ + 
Sbjct: 985  N----DGLSYEIKQLLDTET-SWTGERELVNQRGHLCPVWLNVSMMQTANIKEHYYVVVF 1039

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F +RL   + ++      +  ++ +D+D++
Sbjct: 1040 SDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLLQSIQVAQQTGE-KLALLFLDLDRF 1098

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + +N  +I   A  
Sbjct: 1099 KHVNDSYGHSMGDALLVEASNRLQSCISSEHLLCRFGGDEFVILLRNASNIDEINHIAER 1158

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            +   I  P  L  RE  ++ SIG + W    I     +KNA+LAMYHAK  G  + + + 
Sbjct: 1159 LLAQIVAPFKLFGREFYISTSIGISIWPDDAIQPEAFIKNADLAMYHAKEEGRGNFKYYS 1218

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I ++   + +G+EALI+W HP+ G I 
Sbjct: 1219 SERNAQALYHLRLEADLRKAIEREEFELYYQPQIDIVQGDKFIGMEALIRWRHPQEGFIR 1278

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W       P  + +NI++      +  EG
Sbjct: 1279 PDIFIKVAESCGLIVDIDRWVLRQACLHGAKWIKAY-SEPFKLSVNISAVHFRQADFIEG 1337

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q ++ +T   PS + L  +E V+M   + ++  L +L+ +GI + +DDFGT  S L+YL
Sbjct: 1338 IQQILLETQMPPSSLGLEITEGVLMKELQVAKSHLNQLKSLGIEVAIDDFGTGYSSLAYL 1397

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1398 RHFDVNTLKIDRSFLIDIATNTADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457

Query: 932  CDYIQDSHVASPLGFNSILKLLKE 955
            C  IQ  + A P+        +  
Sbjct: 1458 CYVIQGYYFAKPMSVRDFELYIAA 1481



 Score = 98.1 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
             +   + V +    +Q +    +R   ++ GS   +W+W     +        ++LG  
Sbjct: 786 FAWYRQRQVNSFMLMNQALTESDDRLRQSLRGSDSDLWEWHKDTQKFHLDNR-GSVLGKH 844

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  +   + +    IH  DRD      +S +     R + E+R +  +  + W+ +R RP
Sbjct: 845 TNEIIVSLEDLP--IHPLDRDKVLAQWNSMLVGEVDRFEAEYRYQHREGHWGWLRVRGRP 902

Query: 502 MSNSNG--DILRYIGIANDITEQKKSLEGILCNA 533
           +S +    +I R  GI +DIT Q+   + +   A
Sbjct: 903 ISRNKHTQEIERAAGIYSDITVQRLLEDEVKLLA 936


>gi|157377503|ref|YP_001476103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
 gi|157319877|gb|ABV38975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
          Length = 1076

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 145/580 (25%), Positives = 276/580 (47%), Gaps = 16/580 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            + +  LA     +       + SLA      S + +   D         P    I G + 
Sbjct: 487  IARMSLALNLMLKERLKANRQLSLAAAVFDYSAEGIMVTDQDNHIELINPAFTQITGYSL 546

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G   + L         +F   +   +     + + E   +  D Q +   + I  +
Sbjct: 547  EDVKGRNPSVLNS--NQQPHHFYDSMWKSLKE-LDKWEGEIWNKRKDGQVYPEYLAITVV 603

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +  G+I  +IG+  DI+ +KK  + I      D LT + NR  +  ++   + ++    
Sbjct: 604  RDEAGEITHHIGLFLDISNRKKYEQDIWYKTNYDPLTNLANRHQYSLKIQQEMSVAKQQS 663

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              +  ++ ID+D++K  ND+ G AVG+++L  +  R+  LL   D +ARLSG+ F IIL 
Sbjct: 664  Q-QLAILFIDLDRFKYTNDIYGHAVGNELLCLVAARLESLLGKHDFVARLSGDEFVIILS 722

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +     ++  F   +   ++ P  L   E+ ++ASIG + +  +      + +NAE AMY
Sbjct: 723  NVKRRNEVRQFVENVIDHLSSPFGLSNNELMISASIGVSLFPENGADGELLTRNAETAMY 782

Query: 683  HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G N    F  +   +   RV +++ L  AV   E  L Y PI+ +    ++G+EA
Sbjct: 783  QAKGDGRNSYRYFSANMNSNMLERVQLEQRLRRAVLQEEFCLFYQPIVNMDGRTVIGVEA 842

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+W  PK+G IS  +F+ +AEE  +I+ I  ++L++   D+  W     M  I + IN+
Sbjct: 843  LIRWRDPKYGLISPDKFIPVAEETGLIEPIGEWVLQQALTDLSHWHANGFM--INMAINV 900

Query: 801  ASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            + + L+++        + +++ K   +P  + +  +ES++M + E+ +  L  +R +GI 
Sbjct: 901  SGRQLINSNQVSFDSLLDSMLQKHKIAPRYLHIEITESMLMDDTEQCQQKLEAIRDLGID 960

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            + +DDFGT  S LSYL   P   +K + S +      +    ++++I+ M +++E  ++A
Sbjct: 961  IYIDDFGTGYSSLSYLKRFPISVIKIDKSFVDNMLERQSDANLIKAIVMMGQSLELKLVA 1020

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + I  E   + L  +GC++ Q   ++ P   + + +LL +
Sbjct: 1021 EGIETEEQWEFLQNLGCNFGQGYLISRPRPIDELTELLAD 1060


>gi|221064881|ref|ZP_03540986.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220709904|gb|EED65272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 900

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/611 (23%), Positives = 273/611 (44%), Gaps = 24/611 (3%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---------GIFSDGERQSLA--- 410
            + ++  A +     +          H  A+G   +               ER  LA   
Sbjct: 282 GSMLVLTARLLCFDGLYRWFRARGQAHRDASGRLIRISGLLSDQTASREADERSRLASTV 341

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILD 469
           V  + + V   D     ++       +LG +   M G   R +    H  D+  +  +  
Sbjct: 342 VDNTIEGVVVTDANSRILSVNHAFTRLLGFSEAEMLGKTPRMFKSGRH--DKAFYDAMWA 399

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           S   +  G  Q E   R  + +     + +  + ++N  +  Y+ +  DI+ +K   + +
Sbjct: 400 SM--HATGHWQGEIWNRRKNGEVFPERMSLSAVRDANDKVTHYVCMFTDISAEKAREQQL 457

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A +D LTG+PNR  F   L   + LS ++ NLR  V++ +ID++K +ND  G ++GD
Sbjct: 458 DFLAHRDTLTGLPNRAQFTRMLGEAVALSQSN-NLRMAVLLFNIDRFKDVNDSYGHSIGD 516

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-L 648
           +VL  +  ++   L+  DI+ RL+G+   ++  S        + A  +  +   P     
Sbjct: 517 EVLRHVAVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVEVAERLMAAAGQPWTTPD 576

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + V+ S G   +    +T+ ++L+ A  A+Y AK RG N    F  +      +R+ 
Sbjct: 577 GLSVVVSVSAGICLYPEHALTAGDLLQGAHAAVYGAKARGSNAWCFFHENMTQAARERLA 636

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A++   + L Y P I L    ++G EAL++W  P+ G IS + F+ +AE   +
Sbjct: 637 MEARLRRALDLGHMRLHYQPQIDLATGRLMGAEALVRWLDPEDGLISPARFITVAENSGV 696

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  + L++L    R    WR     P + I +N++    L  ++       ++++ +  S
Sbjct: 697 IGPLGLWVLGEACRQGQQWRAAGL-PDLTIAVNVSLHQFLLTDIAGATARALAESGFPAS 755

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES +   PE +  +L RLR++G+ L +DDFGT  S L++L   P D +K +  
Sbjct: 756 LLELEITESALAEKPEEALAVLNRLRELGLRLAIDDFGTGYSSLAHLKRFPLDLLKIDQG 815

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +     +   + I  S+I +   +   ++A+ +  +  +  L + GCDY Q    + PL
Sbjct: 816 FIRDIPHSADDMTISSSVIALGHAMGLKVLAEGVETQEQLSFLQQKGCDYFQGYFCSRPL 875

Query: 945 GFNSILKLLKE 955
                 +LL++
Sbjct: 876 PAEDFTRLLEQ 886



 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 102/329 (31%), Gaps = 19/329 (5%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA 280
                   + ++    G L+   ++      +        +       + ++    +  A
Sbjct: 16  VALYLCAGMLWLGAQAGVLN-YFDVSLNRQSLRWQIGLFIVWLLATALVALWFMQRKTRA 74

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL- 339
                  +    + +    +     V    A I  A+  L          ++G +  VL 
Sbjct: 75  DQRGRETAQELELVVRHAPA-GMARVHVGGAEIVWANAKLAGWLGRSVESLRGQDFRVLV 133

Query: 340 --------------LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
                         L+      F        A T ++   +   + V    +   +    
Sbjct: 134 PVHDRDEVVLQLQRLLDGSTDYFQVLRQCVNAETGKVTPVLCTTSRVAASGVGGPVALVC 193

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           V+Q +         +        LA+ GSG+ VW+WD +  R+  +  ++ +L      +
Sbjct: 194 VLQDLSEMVSARNAMMRSETMLRLALEGSGNGVWEWDALERRLNFSTGMSALLRYQGQDL 253

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                ++   +H  D    R   +  +      L    R+   D  + W   R +   ++
Sbjct: 254 -AREFDFHQRLHPEDAATARAQAEQALEQ-GSMLVLTARLLCFDGLYRWFRARGQAHRDA 311

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAF 534
           +G ++R  G+ +D T  +++ E     + 
Sbjct: 312 SGRLIRISGLLSDQTASREADERSRLAST 340


>gi|302343686|ref|YP_003808215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfarculus baarsii DSM 2075]
 gi|301640299|gb|ADK85621.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfarculus baarsii DSM 2075]
          Length = 1065

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 142/585 (24%), Positives = 262/585 (44%), Gaps = 20/585 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDG----ERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIAT 436
            +   +  +A       + +D     ++  LA      + + V   +      T       
Sbjct: 484  WYSAEEKIAGLMLYLELITDKKKAQDQLDLAFKFFDNAIEGVMVTNAEGVIETVNRGFTI 543

Query: 437  ILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            I G       G     L   H            +        G    E   R  + +   
Sbjct: 544  ITGYNPDEAIGKTPRLLRSDHHGPEFYKAMWQSIRQH-----GEWSGEIWNRRKNGEAFL 598

Query: 495  MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                I    ++ G++LRY+ I +DIT+ + S E I   A  D LT +PNR  F+DRL   
Sbjct: 599  EWQTIMAQRDAEGNVLRYVSIFHDITDVRLSEEKIEYQANYDALTDLPNRTLFIDRLNLA 658

Query: 555  LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
            +D +     +   V+ +D+D +K +ND LG+ +GD ++  +  R+  +      + R  G
Sbjct: 659  IDQARAAKQM-VAVISLDLDNFKNVNDTLGLPLGDQLIKLVGHRLAAMDGPSVNVGRQGG 717

Query: 615  NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            + + I+     +  +       +    A P +L  +E+ +T+S+G + + +    ++ +L
Sbjct: 718  DEYLIMAEGLTHPRQGVKVVHDISALFAEPFHLAGKELFLTSSMGLSFYPNDGADAATLL 777

Query: 675  KNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            KNA+ A++ AK RG N    F         DR+ ++  L  A+E  E  + Y P + L D
Sbjct: 778  KNADTALHQAKLRGKNTYHLFEPRLNAMVSDRLNLENRLRKALERQEFLIYYQPKVDLRD 837

Query: 733  EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              + G+EALI+W  P  G +    F+ +AEE  +I  I  ++L+   +    WRD+   P
Sbjct: 838  GRMKGMEALIRWQSPDEGLVPPDMFIPLAEETGLIVPIGQWVLDAACQQAKLWRDKY-DP 896

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + +N++ +   + ++   +   +S +  +P  ++L  +ES+V+ N   +  +L RL 
Sbjct: 897  ELRVAVNLSPRQFQEVDMMSLVSYALSNSGLTPDGLELEITESLVLPNLNEASSILKRLA 956

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
              G+++T+DDFGT  S LS+L  +P D +K + S +       +   +  +II MA ++ 
Sbjct: 957  DWGLTITMDDFGTGYSSLSHLKNLPLDYLKIDKSFIMDIKSEGEDATLPGTIISMAHSMG 1016

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +  +  +  L R+ CDYIQ    + PL      +LL  
Sbjct: 1017 IGVIAEGVETQAQLAILRRLNCDYIQGYFYSRPLPERQFEELLAN 1061



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 5/178 (2%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
               +          +   V         V++ +       Q + +      L V  +  
Sbjct: 343 LAKHQSGRLFWVEISLQKTVYQGKTQLLAVVRDIDQQKRDQQTLQTQRHLLELFVEHAPA 402

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +   D     V  +       GL    + G        I  N  + ++ +    +    
Sbjct: 403 SIVMLDSDLRFVMGSKAWVDSFGLRGQDLTGRQLYE---ILPNLPERWKAVYKRCLDGAV 459

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             ++ +  +   D Q  W     RP  ++   I   +     IT++KK+ +  L  AF
Sbjct: 460 EHMEEDI-LDRPDGQVDWCRWECRPWYSAEEKIAGLMLYLELITDKKKAQDQ-LDLAF 515



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 59/212 (27%), Gaps = 32/212 (15%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWL 453
              + +    +          D ++  D     +        T+ G A   +       +
Sbjct: 254 EAERALRESRQNYLSIFNSVNDAIFVHDSESGVILEVNQRCETLFGYARAQLLALSVADI 313

Query: 454 PYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                +   N +   +        G   +E+  +    +  W+ I ++      G   + 
Sbjct: 314 SAG--DAHSNQQAAWEKIQSAIEGGAQVFEWLAKHQSGRLFWVEISLQKTV-YQGK-TQL 369

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DI +QK+  + +              R      +               +++++D
Sbjct: 370 LAVVRDIDQQKRDQQTLQTQ-----------RHLLELFVEHA----------PASIVMLD 408

Query: 573 ID-KY----KKINDVLGIAVGDDVLVSLTRRI 599
            D ++    K   D  G+   D     L   +
Sbjct: 409 SDLRFVMGSKAWVDSFGLRGQDLTGRQLYEIL 440


>gi|228988575|ref|ZP_04148662.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228771192|gb|EEM19671.1| Sensory box protein [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 735

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 148/566 (26%), Positives = 273/566 (48%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R +       D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYTSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T  N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKKILNTAQTSAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|134288328|ref|YP_001110491.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
 gi|134132978|gb|ABO59688.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
          Length = 884

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 133/569 (23%), Positives = 258/569 (45%), Gaps = 10/569 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +      +  I     R    +    D V+  D     V        + G A  +   
Sbjct: 318 RQLRQLARRTAAIEESERRFDRVLQELTDAVYVRDRDGRIVVANRKFGLLFG-AEDTRSL 376

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             +N +  +    +     + +  +      +  E            +      + + +G
Sbjct: 377 VGKNIVELLAHTTKQMVAEVNNRVLNSHGAPMSLEIETTTHS-AVLPIEYTFSAV-DISG 434

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                +    D+T +++    ++  A  D +TG+PNR+ ++DRL+  L  S  D      
Sbjct: 435 Q-SHVLCQMRDVTTRRQYEAQLVKQATFDEITGLPNRRLYIDRLSNALHRSKRD-GTGCA 492

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           VM ID+D +K++ND LG   GD +L++  +R+  LL+  D +AR  G+ F +++    + 
Sbjct: 493 VMFIDLDHFKRVNDTLGHPFGDQLLIAAAQRLSGLLRPGDTVARFGGDEFVLLMSDFTDP 552

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           ++    A  + ++ A P  +  R I+V AS+G + +         +L++A+ AMY AK  
Sbjct: 553 MECRIVAEGIVEAFAAPFEVAARSISVGASVGVSVFPGDGTEPDILLQHADTAMYEAKSA 612

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +    F         D + I   +  A+  +E+ ++Y PII  +  EIV  EAL +W 
Sbjct: 613 GRSGFCFFNHDMNARVHDMLRIDARIRSALARNEISVLYQPIIDPVTREIVKAEALARWH 672

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
               G++   +F+ +AEE  +I  I  ++L+    +   W  +    PI + +N+++K  
Sbjct: 673 SEDLGHVPPDKFIPVAEENGLIAQIGDWVLQEACMNAAKWSKELA-SPITVSVNVSAKQF 731

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + + A +  +      ++L  +E V++ + E +   +  LR+IG+ L+LDDFGT
Sbjct: 732 DDPTFVDSVFAALETSKLPAHLLELEITERVLISDDETALETISALREIGVGLSLDDFGT 791

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   P +T+K + + +           + R+II MAK+++  +IA+ +  +  
Sbjct: 792 GYSSLSYLTKFPLNTIKIDRAFVRDLDHDEQTQNLTRAIIAMAKSLDLKLIAEGVETQEQ 851

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +L   GC+Y+Q  +   P+  + ++ L
Sbjct: 852 ADKLVLYGCEYLQGFYFGRPMTSSELIDL 880


>gi|229118843|ref|ZP_04248192.1| Sensory box protein [Bacillus cereus Rock1-3]
 gi|228664644|gb|EEL20137.1| Sensory box protein [Bacillus cereus Rock1-3]
          Length = 892

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 182/819 (22%), Positives = 333/819 (40%), Gaps = 70/819 (8%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
            + I L +  +     +L    A+ + ++ YI +  GF  K +   S   L   +   I 
Sbjct: 78  AMEITLFLHSLSICDQVLFSYEALPFFIIQYILLFSGFAIKFIKHYSIRGLAQFSFDSIF 137

Query: 261 LSSSLIIFLFMY-LHWNRWH-AKVGYITFSGIACIAILFCMS--------FYYPMVTASI 310
           +    I F   + L  + +H          G      L   +         Y     + I
Sbjct: 138 IVIMNIYFTLTFILDLSSFHTLTKDTWVLIGYFIAQSLVIYAVISLYRREQYSSSRISLI 197

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
              T+  +  Y   F +  G+K       LI    ++ I    +   + K + ++     
Sbjct: 198 IGFTIILVYGYIQLFQLNTGIKTSAEFSYLIHTASILLIGLSSILYILDKPMQHETKTKY 257

Query: 371 LVGGLVLIVI-------------------------------------------------L 381
                V  ++                                                  
Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNKVLIDT 317

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q        +  +    +R         D V+  ++      +     ++    
Sbjct: 318 YEQLTTQLEDEVEEGASALSKSEQRYKSLFEDHPDAVFSLNMHGVFQQSNTACESLF--T 375

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +        + L +I   D D  +  L      R   L  E R +  +  ++++ I + P
Sbjct: 376 AYYCEVASYSLLHFIDPKDHDLLKRALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L TIL+ + T 
Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKTILNTAQTS 492

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    VM +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L
Sbjct: 493 AN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +       A  +   +  P  + + E++VT SIG A +       +E++KNA+LAM
Sbjct: 552 PDMYSEKSAVFIAEQILTILNKPFFIKDEELSVTPSIGIAMYPDYGTDVTELMKNADLAM 611

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G E
Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIEFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N
Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACSEAKRWHNQ-GFSHLKVGVN 730

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI ++
Sbjct: 731 LSVVQFNHTDLIPTISKVLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ 
Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEG 850

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  E   K L    CD+IQ   ++ P+    +  LL ++
Sbjct: 851 VETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWMLLHKK 889


>gi|170729083|ref|YP_001763109.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella woodyi ATCC 51908]
 gi|169814430|gb|ACA89014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella woodyi ATCC 51908]
          Length = 1074

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 147/575 (25%), Positives = 268/575 (46%), Gaps = 18/575 (3%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            + Q   +     +       + +LA      S + +   D         P    I G   
Sbjct: 483  IAQMSQSLNLMLKERLKANNQLNLAAAVFNYSAEGIMVTDKDNCIELVNPAFTQITGYTL 542

Query: 443  GSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G   + L   +       +   + S +     + + E   +  + Q +   + I  
Sbjct: 543  EEVKGKKPSMLKSDMQP---TGYYQSMWSSLEQ-SDKWEGEVWNKRKNGQVYPEYLAITV 598

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +  G+I+++IG+  DI+ +KK  + I      D LT +PN   +  RL   +  S   
Sbjct: 599  VRDEAGNIVQHIGLFLDISNRKKYEQDIWYKTNYDALTNLPNHHLYTTRLQQEILQSKQR 658

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             + +  ++ ID+D++K IND+ G  +G+++L  +  R+  LL   D +AR SG+ F II 
Sbjct: 659  SS-QLAILFIDLDRFKYINDIYGHNLGNELLRLVAARLEYLLDKHDFVARYSGDEFVIIK 717

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   ++  F  ++ K I+ P +L   E+ ++ASIG   +  +      + +NAE AM
Sbjct: 718  TQVETEEQLKKFTKSVLKHISSPFDLSHNELMISASIGICLYPDNGDDPELLTRNAETAM 777

Query: 682  YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G ++   F      +   R+ +++ L  AV   E  L Y PI+ L D  I+G+E
Sbjct: 778  YKAKGDGRSNYRYFSPEMNANMLERIELEQRLRRAVLQKEFCLNYQPIVTLNDRSIIGVE 837

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            ALI+W  PK+G I   +F+ +AEE  +I+ I  ++LE+   D+ SW  Q  M  I + +N
Sbjct: 838  ALIRWQDPKFGLIPPDQFIPLAEETGLIEPIGEWVLEQALIDLHSWHSQGYM--INMAVN 895

Query: 800  IASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            ++ + L++         +  L+ K       + +  +ES++M + E+    L  +R  G+
Sbjct: 896  VSGRQLINGNQISFNRLISKLLKKYGIDAKYLHIEITESMLMEDREQCLHALEAIRDHGM 955

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             + +DDFGT  S LSYL   P   +K + S +           ++++II M K++E  ++
Sbjct: 956  DIYIDDFGTGYSSLSYLKSFPISVIKIDKSFVDNMLECPSDANLIKAIIMMGKSLELKLV 1015

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            A+ I  E  +  L  +GCD+ Q   ++ PL  + +
Sbjct: 1016 AEGIETEKQLAFLRSLGCDFGQGYLISRPLPNHEL 1050


>gi|119477934|ref|ZP_01618034.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [marine gamma proteobacterium HTCC2143]
 gi|119448847|gb|EAW30089.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [marine gamma proteobacterium HTCC2143]
          Length = 722

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/582 (25%), Positives = 280/582 (48%), Gaps = 16/582 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +     + +          V  S DI+   D           I ++L      + G   +
Sbjct: 140 SNQVMQKKLNQSERLHRFIVNNSPDIIMILDKNGLFCFFNSKIESLLNFGKIDLVGKHIS 199

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPM-----SN 504
               +   D +      +  +  + G    +  ++     +      + + P+     +N
Sbjct: 200 --SIVEDEDLEKANYFFEYALSGKAGIQSMDLALKSNNPGHSKRHFELSLCPIEEHGKTN 257

Query: 505 SNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            NG+   R  G A DITE+ ++   I   A+ D LT +PNR  F DRL+  ++ +    N
Sbjct: 258 VNGNQRYRIYGTARDITERLEAEAFINFQAYHDLLTRLPNRALFKDRLSLAIEQAQRS-N 316

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  VM ID+D++K IND LG +VGD +L ++  R+   ++  D L+R  G+ F ++L  
Sbjct: 317 TQLAVMFIDLDRFKIINDSLGHSVGDRLLQAVAGRLQGCIRKGDTLSRFGGDEFTLLLPD 376

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            N+       A  +  S+  P +L++ ++ + ASIG A    +      ++KNA++AMY 
Sbjct: 377 VNDISAAIHIAEKILSSLKQPFDLIDHQVHIGASIGIALSADADQGIDALIKNADIAMYR 436

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K  G +  + F        ++R+ +++D+  A++N E  + Y P I   D +I G+EAL
Sbjct: 437 VKKTGKDGYQFFTNEMHTASTERLTLEQDMRRAIDNDEFEICYQPQINTHDLQICGVEAL 496

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+HP  G +S ++F+ +AE+  +I  I+   L +  R+I  ++ Q +MP + + +N++
Sbjct: 497 IRWNHPTLGRLSPADFIPVAEDCRLIIEIDKMTLRKACREIRQYQ-QKSMPDLRLAVNLS 555

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              +      E +   + +  Y P  ++L  +E+++M + +     L  L   GI L++D
Sbjct: 556 PLMIEKTHFVEDILKTLEEEQYPPELLELEITENILMTDRQDVIKKLLILASKGIQLSID 615

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P +T+K + S ++     +  I+I+ +I+ MAK ++ ++IA+ + 
Sbjct: 616 DFGTGYSSLSYLQTLPVNTLKIDRSFISEIRSVDDDISIVNAIVSMAKGLKMSLIAEGVE 675

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +  +  L+ +GC  +Q            + +   +   L+K
Sbjct: 676 TKEQLDYLSGLGCHVVQGFLFGQATQMKDVERQFHQNLTLLK 717


>gi|207724828|ref|YP_002255225.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206590053|emb|CAQ37014.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 914

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/580 (24%), Positives = 271/580 (46%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LAV    + V    +    +        IL + SG + G  
Sbjct: 329 AIQKDTTERGLAESEERYRLAVSHLNEGVLIQTLDGVVLAANASAERILRVRSGQLVGRN 388

Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505
           R       +  + +D     L S +  + G   L   + +     +  W  + I P+   
Sbjct: 389 RFDMMQRVVDEHGKDVALDALPSKLVRQSGEPILGRIYGLLLKTGELIWARMNIIPIRRH 448

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +    DIT+ K++ + +   A  D LTG+ NR  F+  L + ++ +  D++ 
Sbjct: 449 GDAAPTSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDESR 507

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 508 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 567

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
              ++IA  A  +  ++  P + +     +  SIG A +    I+ +++L++A+ AMY A
Sbjct: 568 VEGMRIAQLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYRA 627

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A +NSEL LVY P   L    IVG EAL+
Sbjct: 628 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 687

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G +S  EF+ +AEE  +I  I  ++L R     ++W          + +N+++
Sbjct: 688 RWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLSA 746

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  +++T   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 747 RQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 806

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S + G       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 807 FGTGYSSLSYLQRFPISNVKIDRSFILGIPSDPDSVALTEAIVAMARALGMTVTAEGVED 866

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+  +   +LL+    +V
Sbjct: 867 ADQVEFLAKAGCQEIQGYYIGKPVTADGFDRLLRAHLAVV 906


>gi|300705049|ref|YP_003746652.1| hypothetical protein RCFBP_20886 [Ralstonia solanacearum CFBP2957]
 gi|299072713|emb|CBJ44066.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
          Length = 903

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 261/575 (45%), Gaps = 12/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447
            +   +  + +    ER  LAV    + +         +   P    IL  G  S     
Sbjct: 325 AVQKAHIVRELQDSEERYRLAVDNLTEGILVQSADGTILACNPSARRILRAGDTSPVGMS 384

Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            +      +  +  +           +   R  L     +   D    W+   + P+   
Sbjct: 385 HLMLMRRSLREDGSEIPVLERPTRVVLSTGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +   NDI   + + + +   A +D LTG+ NR  FL R+  +LD +ATD   
Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDRR- 503

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L   
Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQGDTLARLGGDEFVVLLDHV 563

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +  +IA P +    E  + ASIG A        ++ +L+ A+ AMY+A
Sbjct: 564 RSLDEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F          R  +++ L  A+   EL L Y PI+  +   IVG EAL+
Sbjct: 624 KQNGRNQHRVFTERLSQRAQRRFQLEQHLRRALAAQELSLRYQPIVDAISMGIVGAEALL 683

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   + G++S +EF+ +AE+  +I AI  ++LE+  R    WR+    P  FI +N++ 
Sbjct: 684 RWHSAELGDVSPAEFIPVAEDAGLITAIGEWVLEQACRQAAHWRNTCA-PDFFIAVNLSP 742

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   +   ++++      +++  +E ++M +      +L  L  +G+ +++DD
Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +  
Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFISGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GCD +Q     +P+   +  + L+ 
Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMTAAAYEERLRR 896



 Score = 39.9 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458
           +    +R    V    D ++        V        +LG  ++  + G   +   ++H 
Sbjct: 23  LPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSAHDIVGRELD--AFVHE 79

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +     R   +  +    G    E  +   D     + +   P+    G       +A D
Sbjct: 80  DSMQLARQRREWMIERGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAVQVVARD 137

Query: 519 ITEQKKSLEG-ILCNAFQDNL 538
           I ++K++ +      A    L
Sbjct: 138 IRQRKQAEQALRESEANYRAL 158


>gi|229158909|ref|ZP_04286966.1| Sensory box protein [Bacillus cereus ATCC 4342]
 gi|228624520|gb|EEK81290.1| Sensory box protein [Bacillus cereus ATCC 4342]
          Length = 735

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 148/566 (26%), Positives = 273/566 (48%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R +       D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYTSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T  N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|307824075|ref|ZP_07654302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307734859|gb|EFO05709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1780

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/600 (24%), Positives = 272/600 (45%), Gaps = 31/600 (5%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIA 435
            I  +I   V+  V +    ++   ++ E   +A     S + +   D  +  +       
Sbjct: 1190 IPKIINNKVVGRVWSFRDVTEQKQAEAE-LRIAATAFESQEGMSITDANQTILKINKAFT 1248

Query: 436  TILGLASGSMHGPIRNWLPY----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             I G +   + G     L      +H      F ++L   +    G  + E   R  + +
Sbjct: 1249 RITGYSPEEVIGKTHAMLNSGRQDVH------FYSVLQHTLKQD-GYWEGEIWNRRKNGE 1301

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             +   + I  +S++N  I  Y+    DIT+ K++ E I   A+ D LT +PNR+   +RL
Sbjct: 1302 IYPQWLSITTVSDANNQITNYVAAFTDITKDKEAEETIHNLAYYDPLTALPNRRLLWERL 1361

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               +++   D   +  ++++D+D++K +ND +G   GD++L  +  RI   L+  D++AR
Sbjct: 1362 KHGIEVERRDGK-QLALLMLDLDRFKAVNDSMGHLAGDELLQQVAARIKARLRDVDMVAR 1420

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-----------REITVTASIGF 660
            L G+ F ++L    +    A  A  +   ++ P  LL+           R++ + ASIG 
Sbjct: 1421 LGGDEFIVLLEDITHPEDAARVAENIVADLSKPFQLLKNNSACPDPELSRKVRIGASIGI 1480

Query: 661  ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718
            + +     +   +L NA++A+Y AK  G      F         +R+ ++  L  A E  
Sbjct: 1481 SLFPQHGDSPETLLDNADIALYRAKDEGRGCFAYFSEEFTIIARERIALETRLRRATEQR 1540

Query: 719  ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            EL + Y   I +    I+G EAL++W  P  G IS + F+ IAEE  +I  I  ++L   
Sbjct: 1541 ELCVYYQAQIDIDSGLIIGAEALVRWHDPAAGLISPANFIPIAEETGLIVEIGAWVLRET 1600

Query: 779  ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                  W D    P + + +N++      +++   +  ++S+T +    ++L  +ES +M
Sbjct: 1601 CLQGRRWIDAGL-PSLTLAVNVSPHQFRRSDISALVAEVLSETGFPAELLELELTESGLM 1659

Query: 839  GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896
             N E++  +L  LR  G+ L +DDFGT  S L+YL   P D +K + S +      +  +
Sbjct: 1660 ENEEKAVEVLNNLRAQGVRLAIDDFGTGYSSLAYLKRFPLDVLKIDKSFIDDIPSVQDDM 1719

Query: 897  AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             I  +I+ M   +   ++A+ +     +  L   GCD  Q    + PL      +LL+++
Sbjct: 1720 EITATIVAMGHILGFKVLAEGVETLEQLAFLREKGCDTYQGYIKSKPLPAEDFAQLLRDQ 1779



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +I  T++    +    ++    + +   LA   +G   +  D+  +R  ++P +  ILG+
Sbjct: 336 VIALTLLASYRSLKRKNKIAARNEKLLRLAHETAGIGYYVTDLATERWESSPLLDQILGI 395

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRI 499
            +      I NW   IH              + + R R   E+ + RA+DN+  W+I   
Sbjct: 396 DAH-FERTIPNWGALIHPEHYQRVLDHYQEIL-HSRERFSMEYEIIRASDNETRWVIAHG 453

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE--GILCNAFQDNLTGIPNRQSFLD 549
               +  G+  + +G   DITE+K +        +AF         R  F D
Sbjct: 454 DIEFDKTGNPAQLVGTVQDITERKHAEAALRESEDAF---------RHLFED 496



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 15/159 (9%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I   L++    + +    E   L +  S   +   +                G      
Sbjct: 772 RITEALSSLISIKSLRESEEHFRLLIQKSPVAIGIINKQNGIDLLNDRFIRTFGYTLND- 830

Query: 446 HGPIRNWLPYIHINDR------DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              +  W P  + ++       + +   ++  +   +     EFRV   +     +I   
Sbjct: 831 APNLEAWWPLAYPDEHYRDQVKETWTGFMEKAIIEEKDLEPMEFRVTCKNGTVRDIIFYN 890

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             +    G+  R +   +DITE+K     +   +  D L
Sbjct: 891 AIV----GE--RILVFFDDITERKAVENKLR--SRTDEL 921



 Score = 44.9 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 67/191 (35%), Gaps = 19/191 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442
              +Q +    +    +    +        S D +         +       T LG  + 
Sbjct: 467 VGTVQDITERKHAEAALRESEDAFRHLFEDSKDPILLI-KEGRFIDCNAAALTQLGYHSR 525

Query: 443 GSMHG-PIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             +         P    + +   +    ++ + +    G  ++E+    AD+    + + 
Sbjct: 526 SELINYKPDEISPDYQPDGQSSEEKAAEMIAAALQ--VGYHRFEWLHVRADDSPLPVEVS 583

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + PM+  +G+++ ++    DITE+K++ + +             N    ++R++ I   +
Sbjct: 584 LTPMT-VHGELITHVC-WRDITERKQTEQQLTRQLRY------LN---IMERISRINATA 632

Query: 559 ATDDNLRPTVM 569
            + + +   V+
Sbjct: 633 ESLEAMLDGVL 643


>gi|85712929|ref|ZP_01043969.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF
            andEAL domains [Idiomarina baltica OS145]
 gi|85693235|gb|EAQ31193.1| Signaling protein with a ligand-binding sensor domain, PAS, GGDEF
            andEAL domains [Idiomarina baltica OS145]
          Length = 1135

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 263/566 (46%), Gaps = 19/566 (3%)

Query: 400  IFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            I +  ER    + ++    D +  +D    +         I G     + G       Y 
Sbjct: 579  IINSDERIDMLATSLTNISDGICIFDRFFRKREINTAYERITGYQREQVIGQAFALPHY- 637

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               DRD    I  + +  R G    E     AD     + + +  + N +G+I   +   
Sbjct: 638  ---DRDFTDQIKHTVL--REGSWSGEVTDFNADGAELLLELTLDAVRNDSGEIKLIVASF 692

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE++ +   +   +  D+LTG+PNR  F      +   +     +   +++ D+D +
Sbjct: 693  SDITERRNTENELRRLSNTDSLTGLPNRSYF-----QVSHSNLVRKRVAHALLLFDLDDF 747

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K+IND LG  VGD++L  +  R+ EL +  D L RL G+ FGI++    +   I+  A  
Sbjct: 748  KRINDSLGHEVGDELLCRVADRLAELGRRQDTLYRLGGDEFGILIEDNTDINVISTIAQQ 807

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +   IA    +   EI + +SIG   +     TS E+L+ A+ AMYHAK RGGN  + F 
Sbjct: 808  VNTEIAKAYRIKGHEIALGSSIGIVLYPHDAHTSQELLQKADTAMYHAKQRGGNCYQFFN 867

Query: 697  VSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             S   +    +  +  +  A+   ++ + Y P + +    I G+EAL +        IS 
Sbjct: 868  ASMNENAIQRLVLESQVRHAIRTHQVEVYYQPKMEIATGHISGIEALARIRDEYGQFISP 927

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            ++F+ + EE  +I  ++  +L    RD+         P   + IN++++    + L   +
Sbjct: 928  AQFIPLCEETGLIIPLSEQVLRTACRDMRQLLTLQGAPR-SVAINLSARQFTQSSLALFI 986

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + ++ +    P  I+   +E +VM +PER+  +L  L  +G+ L LDDFGT  S L+YL 
Sbjct: 987  EQVLQEEEMHPRHIEFEITEGMVMSDPERAIAMLENLADMGVQLALDDFGTGYSSLAYLK 1046

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P  T+K +   +      E+   ++ SII MA N+   ++A+ +  +  +  L ++ C
Sbjct: 1047 RFPMHTLKIDKEFVDDITFDERDRKMVESIIGMAHNLGLKVVAEGVEEKAQLDILEQLQC 1106

Query: 933  DYIQDSHVASPLGFNSILKLLKERFP 958
            +YIQ  + A P+   ++++ + ++ P
Sbjct: 1107 EYIQGFYFAKPMSAEALIEFITKQQP 1132



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 5/179 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            N       +  +++++ L    +   +         +          + G+   VW W+
Sbjct: 419 ANGFTAMHYLSMIIVLLALAILFIFLLLKRKARAYHKLTEAHTSLHQLLNGTQQQVWHWN 478

Query: 423 IVRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           +V   V      +         +  G  ++    +H +D       L+          Q 
Sbjct: 479 LVNSEVERVHIWSHCPHFPLDGVRFGLGQSDQSNVHPDDIGELTAALEQVKSGHISHYQC 538

Query: 482 EFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            +R++    Q+ W++ R   ++   +G  ++  G  +DI++   S E I   A   +LT
Sbjct: 539 TYRIKNGQ-QWLWVLERGELVAAETSGKPIKVQGTLSDISDIINSDERIDMLAT--SLT 594


>gi|120597360|ref|YP_961934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120557453|gb|ABM23380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1487

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 137/564 (24%), Positives = 260/564 (46%), Gaps = 12/564 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  + +  + A   + + V   +   +          I+G     + G   +    +
Sbjct: 925  QRLLEDEVKLLAQAFENTSEGVLILESNENIRVANHAAQQIIGSGDTDLVGLSFSQFLRM 984

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +    D     +   +         E  +         + + +  M  +N     Y+ + 
Sbjct: 985  N----DGLSYEIKQLLDTET-SWTGERELVNQRGHLCPVWLNVSMMQTANIKEHYYVVVF 1039

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F +RL   + ++      +  ++ +D+D++
Sbjct: 1040 SDITERKRTEADLRRLANYDVLTGLPNRSLFSNRLLQSIQVAQQTGE-KLALLFLDLDRF 1098

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+   +    +L R  G+ F I+L + +N  +I   A  
Sbjct: 1099 KHVNDSYGHSMGDALLVEASNRLQSCISSEHLLCRFGGDEFVILLRNASNIDEINHIAER 1158

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            +   I  P  L  RE  ++ SIG + W    I     +KNA+LAMYHAK  G  + + + 
Sbjct: 1159 LLAQIVAPFKLFGREFYISTSIGISIWPDDAIQPEAFIKNADLAMYHAKEEGRGNFKYYS 1218

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNIS 753
               ++     + ++ DL  A+E  E  L Y P I ++   + +G+EALI+W HP+ G I 
Sbjct: 1219 SERNAQALYHLRLEADLRKAIEREEFELYYQPQIDIVQGDKFIGMEALIRWRHPQEGFIR 1278

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  I+ ++L +       W       P  + +NI++      +  EG
Sbjct: 1279 PDIFIKVAESCGLIVDIDRWVLRQACLHGAKWIKAY-SEPFKLSVNISAVHFRQADFIEG 1337

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q ++ +T   PS + L  +E V+M   + ++  L +L+ +GI + +DDFGT  S L+YL
Sbjct: 1338 IQQILLETQMPPSSLGLEITEGVLMKELQVAKSHLNQLKSLGIEVAIDDFGTGYSSLAYL 1397

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI+ SII +A+N++  ++A+ I     ++++   G
Sbjct: 1398 RHFDVNTLKIDRSFLIDIATNTADQAIVSSIIELARNLKLNVVAEGIETVEQLEQVFSRG 1457

Query: 932  CDYIQDSHVASPLGFNSILKLLKE 955
            C  IQ  + A P+        +  
Sbjct: 1458 CYVIQGYYFAKPMSVRDFELYIAA 1481



 Score = 94.6 bits (234), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
             +   + V +    +Q +    +R   ++ GS   +W+W     +        ++LG  
Sbjct: 786 FAWYRQRQVNSFMLMNQALTESDDRLRQSLRGSDSDLWEWHKDTQKFHLDNR-GSVLGKH 844

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  +   + +    IH  DRD      +S +     R + E+R +  +  + W+ +R RP
Sbjct: 845 TNEIIVSLEDLP--IHQLDRDKVLAQWNSMLVGEVDRFEAEYRYQHREGHWGWLRVRGRP 902

Query: 502 MSNSNG--DILRYIGIANDITEQKKSLEGILCNA 533
           +S +    +I R  GI +DIT Q+   + +   A
Sbjct: 903 ISRNKHTQEIERAAGIYSDITVQRLLEDEVKLLA 936


>gi|90426096|ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108110|gb|ABD90147.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 915

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 140/624 (22%), Positives = 271/624 (43%), Gaps = 40/624 (6%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +L+ +                 +     G  ++I  ++   + Q         + +  D 
Sbjct: 296 LLMVVTTTVSSSLADWYRQTRFLIIVAAGSTMIIAAILFLIIRQLTRQHRATQRQLTRDK 355

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R S A+      +  +D     V        + GL++  +                   
Sbjct: 356 QRLSTAINNMTQGLLLFDSSARLVVCNQRYMEMYGLSAEVVKPGC--------------- 400

Query: 465 RTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL----------RY 512
              L   +  R+  G  + +     AD   H     +      +G  +           +
Sbjct: 401 --SLRQILAERKAAGSFEGDIDAYCADTLSHVAARNVTVAVTPDGRSIQIATEPAPEGGW 458

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DIT++++S E I   A  D LT +PNR SF +R+    +  A        ++ ID
Sbjct: 459 VATHEDITDRRRSEERIAYLAHYDELTSLPNRTSFRERIEDEFERVAR--GGTLALLYID 516

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID++K IND LG  VGD +L  +  R+   L+  D +ARL G+ F I+  +  +  ++ +
Sbjct: 517 IDEFKAINDSLGHPVGDALLKIVAARLKACLRETDFVARLGGDEFAILQTAPRDVQEVTE 576

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               + ++I  P   L  +I+  ASIG A        + +++KNA+LAMY AK  G    
Sbjct: 577 LVARLFETIRAPCECLGHQISTDASIGIALAPPHGTDTDQLIKNADLAMYQAKADGRRTC 636

Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F         +R  ++ +L  A+ +    + Y PI+ L + +++G EAL++W HP+ G
Sbjct: 637 RFFEPRMEASAKERRTLELELRKAIADCAFEIYYQPIVELRNGDVIGCEALLRWRHPQRG 696

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS ++F+ +AE   +I  +  ++L     +  +W  +     + + +N++        L
Sbjct: 697 MISPAKFIPVAEATGLINELGEWVLRTACAEAANWPAE-----MSVAVNVSPVQFKSRTL 751

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A ++ +    SR++L  +E+V++ + E +  +L  L+ +G+ + LDDFGT  S L
Sbjct: 752 PLKVAAALAASGLPASRLELEITEAVLIDDDETALSVLHELKTLGVRIALDDFGTGYSSL 811

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   PFD +K +   + G    +   AI+++++ +A     T  A+ +        L 
Sbjct: 812 SYLQRFPFDKIKIDRCFIDGIARPDGASAIVQAVVNIATARHMTTTAEGVETAEQRDLLR 871

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
            +GC ++Q    +  +  +++ +L
Sbjct: 872 GLGCTHMQGYLFSPAIAPDTVRQL 895


>gi|21492856|ref|NP_659931.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|190894094|ref|YP_001984388.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|21467281|gb|AAM54944.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|190699755|gb|ACE93838.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|327192457|gb|EGE59412.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 852

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 137/577 (23%), Positives = 257/577 (44%), Gaps = 8/577 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
                    + V         I S   +    +    D+VW  ++    +        + 
Sbjct: 263 AATTLLAFSRDVTERRQAEDAINSVRTQLLSVLQTIPDMVWVKNVDGVHLLCNHAFERLT 322

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMII 497
           G +   + G     L      +R +     D       G L  E  V +  + Q   +  
Sbjct: 323 GKSEAEVVGKTDLELFG---AERAHISGKSDEATIEAGGILIDENWVVSPENGQSILLET 379

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R   +  + G++   +G++ D+TE   S E I   AF D +T +PNR  F +RL  ++  
Sbjct: 380 RKLAVLGAGGEVTGVLGVSRDVTELNASREKIRQMAFYDPVTSLPNRLLFNERLQKVVSD 439

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           ++     R  VM+IDID +K +ND +G  VGD +L  +  R+ + ++  D +ARL G+ F
Sbjct: 440 AS-SQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVATRLKKSVRDLDTVARLGGDEF 498

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L     +  +   A ++ +       L  +E+ V+ S+G A         ++++K A
Sbjct: 499 AILLPEIQTTDDLDWVACSILERFKESFLLDGKEVYVSCSVGIAISPDDSTDVNDLVKYA 558

Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK  G N    +         +R+ ++ +L  A+E  EL L Y P + L    +
Sbjct: 559 DSAMYLAKRSGRNSFRFYSKDLTVGVEERMQLESELRRAIEREELELHYQPKVLLDSGVM 618

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EAL++W HP+ G I    F+ +AE+  +I  +  ++L    +         +     
Sbjct: 619 IGSEALLRWPHPEMGMIPPVRFIPVAEDTGLIVELGRWVLREACKTAKELNADCHHLH-K 677

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I +N++ K    + L   + A++ +T      I++  +ES+++     +   L +LR++G
Sbjct: 678 IAVNLSGKQFQCSRLVNEIAAILGETGCRAEWIEIEITESLLLDRKGETLQTLLKLRQMG 737

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA 915
            S+ +DDFGT  S L+YL   P DT+K + S +  S ++   ++++I+ +A+ +   ++A
Sbjct: 738 FSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSSDKRNEELVKAILSIAQCLGQDVVA 797

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +        L   GC   Q    +  L    ++ L
Sbjct: 798 EGVETAEQAAFLAANGCGSAQGFFYSKALPKMELIAL 834



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 4/146 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLAS 442
           F   ++            +D      A++G     ++  D+    V        +LG + 
Sbjct: 14  FQKRRNRRRDEALHHDTSADRGALLEALIGVLPLPIFFKDLHGRYVGCNKVFEDLLGRSR 73

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     L            +I +  +  R G    E ++  A+     ++      
Sbjct: 74  DEIIGNTDFDLSSTQ---LAEIYSIEEKGLLERGGAQVSERKIALANGAILDVVCNKAVF 130

Query: 503 SNSNGDILRYIGIANDITEQKKSLEG 528
              + +    IG+  DITE K + + 
Sbjct: 131 RGHDDEPAGLIGVIIDITEHKLAEQE 156



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 45/145 (31%), Gaps = 4/145 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             VI  +       Q + +  E     V    D++++ D     +        +L     
Sbjct: 141 IGVIIDITEHKLAEQELKNALELAQGIVTAIPDVLFEVDEDGRYLQVWTRNPELLAQQRE 200

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G   +    +  +        L +         +    V   + +  W  + +    
Sbjct: 201 MLLGRTVD--QVLAPDQAAIAMEALRTASSEGVAYGRC-ISVSLPNGETRWFELSVARRP 257

Query: 504 NSN-GDILRYIGIANDITEQKKSLE 527
           +++       +  + D+TE++++ +
Sbjct: 258 SADPDAATTLLAFSRDVTERRQAED 282


>gi|300117863|ref|ZP_07055630.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
 gi|298724727|gb|EFI65402.1| sensory box/GGDEF family protein [Bacillus cereus SJ1]
          Length = 735

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 146/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTNVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T      + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKSEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|218887542|ref|YP_002436863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758496|gb|ACL09395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 663

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 150/551 (27%), Positives = 266/551 (48%), Gaps = 24/551 (4%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W+ D     V  TP    I G +  S     R     +H  D   +R      V      
Sbjct: 121 WE-DADGKVVFVTPACQRITGYSLESFRANARFIEGIMHPEDLPLWRKH-REMVASGAEM 178

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           ++ E RVR  D +  W+    R + ++ G          D+T++K  L  +   A+ D L
Sbjct: 179 VEVEVRVRTQDGRERWLACTSRRLHDAEGTSQGVRFSGRDVTDRKIMLTQMKHQAWHDPL 238

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR   LDR+   L  +    +    V  +D+D++K +ND +G + GD VL  + RR
Sbjct: 239 TGLPNRALCLDRIDRSLHRARRGVDNVCAVAFLDLDRFKVVNDSMGNSAGDQVLREVARR 298

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + E  +  D ++RL  + F ++L    +  +       +  S+  P+ +  R+I ++AS+
Sbjct: 299 LAENTRTIDTVSRLGSDEFILLLDEVRSEEEALITVQRICTSLEPPLEVAGRQIRISASV 358

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716
           G          + EML+NA +AM+H K  GG+ +  F+ S      + + ++ DL  A++
Sbjct: 359 GVVM-NRGGGNADEMLRNANIAMHHVKEHGGDGMAVFQPSMLEQAMNLMQLEIDLHRALD 417

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N+E +LVY PI+ L D  + G EAL++W+HP  G +  SEF+ ++E    I  +  ++L 
Sbjct: 418 NNEFFLVYQPIMSLHDRRLTGFEALVRWNHPDRGIVGPSEFIPVSESTGQIHQVGHWVLA 477

Query: 777 RIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
              R + +WR+Q   M  + + +N++++ L    L E + A++ +T      +KL  +E+
Sbjct: 478 EACRALAAWREQQPSMRSVIMHVNLSARQLSQPGLVEQVAAVLRETGLPARCLKLEVTET 537

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           ++M NP+ + L+L RL++IG+ L +DDFGT  S LSYL   P DT+K + S +       
Sbjct: 538 MLMENPDYANLVLRRLKEIGVRLCIDDFGTGYSSLSYLQQFPIDTLKVDQSFVARMCREP 597

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYG--------EIDIKELTRMGCDYIQDSHVASPLG 945
               I+++++ +A ++                   E     L+ + C+  Q    + P+ 
Sbjct: 598 GHFKIVQAVVALAHSLGL--------DVVAEGVEEEEQRIMLSELSCEGGQGYLFSRPVP 649

Query: 946 FNSILKLLKER 956
              +  L  +R
Sbjct: 650 GEDVPGLFVDR 660


>gi|83746060|ref|ZP_00943115.1| Sensor protein [Ralstonia solanacearum UW551]
 gi|207742445|ref|YP_002258837.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|83727243|gb|EAP74366.1| Sensor protein [Ralstonia solanacearum UW551]
 gi|206593835|emb|CAQ60762.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 903

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 261/575 (45%), Gaps = 12/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447
            +   +  + +    ER  LAV    + +         +   P    IL  G  S     
Sbjct: 325 AVQKAHIVRELQDSEERYRLAVDNLTEGILVQSADGIILACNPSARRILRAGDTSPVGES 384

Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            +      +  +  +           +   R  L     +   D    W+   + P+   
Sbjct: 385 HLTLMRRSLREDGSEIPVLERPTRVVLSTGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +   NDI   + + + +   A +D LTG+ NR  FL R+  +LD +ATD   
Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDGR- 503

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L   
Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQADTLARLGGDEFVVLLDHV 563

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +  +IA P +    E  + ASIG A        ++ +L+ A+ AMY+A
Sbjct: 564 RSLDEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F          R  +++ L  A+   EL L Y PI+  +   IVG EAL+
Sbjct: 624 KQNGRNQHRVFTERLSQRAQRRFQLEQHLRRALSAQELSLRYQPIVDAISMGIVGAEALL 683

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   + G++S +EF+ +AE+  +I AI  ++LE+  R    WR+    P  FI +N++ 
Sbjct: 684 RWHSAELGDVSPAEFIPVAEDAGLITAIGEWVLEQACRQAAHWRNTCA-PDFFIAVNLSP 742

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   +   ++++      +++  +E ++M +      +L  L  +G+ +++DD
Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +  
Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFISGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GCD +Q     +P+   +  + L+ 
Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMSAAAYEERLRR 896



 Score = 42.2 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 7/141 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458
           +    +R    V    D ++        V        +LG  ++  + G   +   +IH 
Sbjct: 23  LPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSAHDIVGRELD--AFIHE 79

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +     R   +  + +  G    E  +   D     + +   P+    G       +A D
Sbjct: 80  DSMQLARQRREWMIEHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAVQVVARD 137

Query: 519 ITEQKKSLEG-ILCNAFQDNL 538
           I ++K++ +      A    L
Sbjct: 138 IRQRKQAEQALRESEANYRAL 158


>gi|307720880|ref|YP_003892020.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978973|gb|ADN09008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 762

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 153/734 (20%), Positives = 311/734 (42%), Gaps = 31/734 (4%)

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA---KVGYITFSGIACIAILFC 298
           +         +      I+  S L  F +     N       +   I + G+   +ILF 
Sbjct: 33  IFYNHVNNKELLVWYFLISSVSLLRFFSYKLYKKNNHKFSIQRWKQIFYGGLIVSSILFG 92

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           ++ +   V  S        I++          +    RAV L     +  +  + + + +
Sbjct: 93  LTPFLFFVQQSPLHQAALIIIISGLSAGGVSSLSSLIRAVQLFL---VFILTPLIIKLLM 149

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS------QGIFSDGERQSLAVL 412
              L  + I   +   L+L++ +       ++               +     R      
Sbjct: 150 QNTLLYNSIAFLVFLYLILMLYIAKEFYKNYLNILISKQMYKKTAAELSISENRFKTVFK 209

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            +   ++ +D          +    L  +   +     + L     +        L + +
Sbjct: 210 QAPLGIFMYDTNMIIHEVNQEFMNFLEASQEFLISLDLHTL----PD--QRIFPSLQAPL 263

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G  + ++  +       W+ +   P+ + N +++  IGI  DIT + ++       
Sbjct: 264 DNIEGFYEGQYTTKFKQKNL-WISMNTSPLKDINNNVIGGIGIVTDITHRIQTQLQFEHQ 322

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT I NR   L+++   +       N+   V+ +D+D +K IND LG AVGD++L
Sbjct: 323 AKHDTLTDIANRSLLLEKIEQEIIRYKRH-NIIFGVIFLDLDHFKNINDSLGHAVGDELL 381

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINL 647
           +    R+ ++++  D +AR+ G+ F I+L    N ++         A  +   ++    +
Sbjct: 382 IQTAHRLKDVIRVEDTIARIGGDEFVILLPDLANEMQFAATNAERIAEKIHNILSKSFKI 441

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
            +  + V+AS+G A   +   +  ++LK A++AMY AK  G N  + ++          +
Sbjct: 442 NDLTLNVSASLGIAFIGNGSQSPDDILKYADIAMYEAKKAGRNTTKFYQHKMDEWISRRM 501

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             +  L  AV+N EL L Y PII     +++G EAL++W+ PK+ ++   EF+ IAEE  
Sbjct: 502 AIENGLRDAVKNQELELHYQPIIDFATSKVIGAEALLRWNTPKFNDVYPDEFIPIAEESG 561

Query: 766 MIKAINLFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLY 823
           +I  I  ++L+   +  ++W+ +         I +NI++    ++     + ++I KT  
Sbjct: 562 LILEIGKWVLQTALKQFVAWQKEFTGVIELQKIAVNISAHQFENSNFLHDVDSIIKKTNI 621

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            PS ++L   ES ++ N +     + +LR +G+S+++DDFGT  S LSYL  +PF T+K 
Sbjct: 622 KPSCLELELVESALVENLKTVSTRMQKLRDLGVSISIDDFGTGYSSLSYLKKLPFTTLKI 681

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +           ++ +I+ +A+     ++A+ +  +     L    C Y+Q  + +
Sbjct: 682 DKSFVMDIQNDVDDKELISAILMIAQTFNFEVVAEGVETQEQYLFLKEKKCTYLQGYYCS 741

Query: 942 SPLGFNSILKLLKE 955
            PL     ++ L++
Sbjct: 742 KPLPNEQFIQFLRK 755


>gi|302879091|ref|YP_003847655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581880|gb|ADL55891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 907

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 147/588 (25%), Positives = 283/588 (48%), Gaps = 19/588 (3%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           G  V +V++      ++          + +   +         + V  +D     +T   
Sbjct: 331 GNAVGVVMVFHDVSKRYA-----LLDELGAARAQFETLFEQLPEGVLLFDESLAVITHNR 385

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
           + A +L  AS ++     + +  +  +D++      +       G   +E R R    + 
Sbjct: 386 EAANLLEYASDALLLLQVSDIEAM--DDQNAIAARKEKL--QLTGIDNFESRYRTRSGRL 441

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             + + ++ +   NG I  +  +  DITEQK++   I   A+ D LTG+PNR+   DRL+
Sbjct: 442 MDVDVSVQVVQLPNGRIA-FQTLFRDITEQKQTSAQIEHLAYHDQLTGLPNRRLLKDRLS 500

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +      D  +  +M +D+D +K +ND LG   GD +L  +  R+   ++  D LAR+
Sbjct: 501 QAVSSVVRRD-AKLALMYLDLDHFKDVNDSLGHGAGDVLLQIVAERLQGCVRADDTLARM 559

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L   N +  +A  A  +   ++ P+ +   E+ +T S+G +        + +
Sbjct: 560 GGDEFVLLLNGVNGADDVASIAGKIIHELSQPMRIGNDELRITPSLGISMCPQDGRDADD 619

Query: 673 MLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +LK A++A+Y AK +G      +         +RV ++  L  A+E +E  L Y P + L
Sbjct: 620 LLKYADVALYQAKQQGRATYRFYTQALHDQSVERVQLERLLRHALERNEFELYYQPQVDL 679

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EALI+W+HP  G +S + F+ IAE+  +I  I  +++++       W DQ  
Sbjct: 680 CDGRIIGCEALIRWNHPGMGQVSPARFIPIAEQSGLIIDIGNWVMKQACHQAKRWHDQGW 739

Query: 791 MPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              I +  N++++  + + EL + ++  ++++   P+R+++  +ES+++ +P+    +L 
Sbjct: 740 D--IKVSFNVSARQFMRSGELMQSLRDALAESGVDPTRMEVELTESLLL-DPQGMGEILH 796

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAK 907
            +R +GI L LDDFGT  S LSYL   P   +K + S ++   +      ++++II MA 
Sbjct: 797 EIRALGIQLALDDFGTGYSSLSYLRRFPISILKIDRSFVSAADNNADDAEMVKTIIGMAH 856

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           N+  ++IA+ I        L   GC+  Q  H + P+       LL++
Sbjct: 857 NLRMSLIAEGIETNAQRDMLETQGCEVGQGYHYSCPVPATEFSLLLQQ 904



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 31/260 (11%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              +   + +  L  G   + +++    +            I     R        GD V
Sbjct: 183 QGMVAGVLGRHGLKLGA--LAMVLPLLSLWFFWQVYRALGFIVQSDARIRAIYEAIGDAV 240

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFV-GYRR 476
              D      +       +LG       G +  +      ++ +    +  +S +     
Sbjct: 241 LVGDRQGRVESINATAQRLLGWTEAEARGKLISDVFELYDVHHQQRVESPAESVLRDGIP 300

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
             +     +R  D     +     P+ + +G+ +  + + +D++++          A  D
Sbjct: 301 IPMSNGMLLRRRDGSQLAVEDSAAPVRDEHGNAVGVVMVFHDVSKRY---------ALLD 351

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID-----IDKYKKINDVLGIAVGDDV 591
            L G   R  F      +             V++ D     I   ++  ++L  A    +
Sbjct: 352 EL-GAA-RAQFETLFEQL----------PEGVLLFDESLAVITHNREAANLLEYASDALL 399

Query: 592 LVSLTRRIGELLKFPDILAR 611
           L+ ++  I  +     I AR
Sbjct: 400 LLQVSD-IEAMDDQNAIAAR 418


>gi|254562232|ref|YP_003069327.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
            DM4]
 gi|254269510|emb|CAX25476.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
            GAF and two PAS/PAC sensor domains [Methylobacterium
            extorquens DM4]
          Length = 1003

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 147/579 (25%), Positives = 256/579 (44%), Gaps = 14/579 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                   + A+      + S           +   V+   +    V     +A + G   
Sbjct: 431  HICTFTDLTASRQSEAALRSAEADYQSLFQNAVIGVYRARLDGGIVQANRALARLHGYGD 490

Query: 443  GSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              +  P   +    YI     + F T L+            E R R A  +  W+     
Sbjct: 491  AGLSLPEGGFSHDWYIEPGRHEAFLTCLEQ--KGHVEDFVSEVR-RHAGGERIWVSETAW 547

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             + ++ G  + + G   D TE+K++   I   A  D LTG+PNR+ F + L   +D +  
Sbjct: 548  VVRDAAGRPIWFEGTVADATERKRAQALIEHMARHDALTGLPNRRLFQETLAREIDGALR 607

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D      V+  D+D++K +ND  G   GD +L  +  R+   L+  D++ARL G+ F II
Sbjct: 608  DGG-SVVVLCCDLDRFKAVNDTFGHPAGDALLRVVAGRLRATLREGDVVARLGGDEFAII 666

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L S     +IA FA  + ++   P++L  R  TV  SIG A W      +  + KNA++A
Sbjct: 667  LPSRGKQRRIAAFARRLIQAAGRPVDLGGRATTVGVSIGVAVWPKHGDNADTLFKNADIA 726

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +Y AK  G N    +      +      ++ ++  ++ +    L Y PI  L D    G 
Sbjct: 727  LYRAKDSGRNTFRFYESGMALAVVTRNLLEIEMRESIRSGGFALHYQPIFALADGAPQGF 786

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W+HP  G IS   F+ +AEE  +I  +  + L    R+  SW        + + +
Sbjct: 787  EALLRWNHPLRGPISPGAFIPLAEESGLITQLGAWALHEACREAASWP-----GDLRVAV 841

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N+++       L + +   ++ +     R++L  +ESV+M + +     L RLR +G+ +
Sbjct: 842  NVSAVQFRKTGLEQSVMRALAASGLPAGRLELEITESVLMQDSDAVIGSLHRLRAMGVRI 901

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKD 917
             LDDFGT  S LSYL   PFD +K + + +         A++R+++ + + +   I A+ 
Sbjct: 902  ALDDFGTGYSSLSYLCRFPFDKIKIDRAFIRDIDEPVAAAVVRAVVGLGERLGMAITAEG 961

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  E  + ++ R GC  +Q   +  PL     + L+  R
Sbjct: 962  VETEEQLVQVRRKGCTEVQGFLLGRPLPAAEAMTLVAGR 1000



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H+L      + + +     ++A   +    W  D     +  +  IA I G  +     P
Sbjct: 181 HLLEWEARQRALEAA---HAMAEQIAAFGHWRIDAATRTIAWSDGIARIFGRNAERATLP 237

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +   + + H +DR+     +D  +  R     G  ++  R+   D +   + +      +
Sbjct: 238 LETHIGFYHPDDRERVWAAMDEALAGRSRTLGGGYEHRSRILRPDGEIRVVAVHGIGEHD 297

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
             G ++   G+  D+T   +S + + 
Sbjct: 298 EAGRLVSIFGVCLDVTGMARSEQRLR 323


>gi|42779774|ref|NP_977021.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42735691|gb|AAS39629.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 568

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/570 (25%), Positives = 257/570 (45%), Gaps = 28/570 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES  + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 LSVRSILKRTGFPPNRLILEITESTAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             MGCDY+Q  + A PL    + + L   F
Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKEKLTTDF 567


>gi|229176024|ref|ZP_04303519.1| Sensory box protein [Bacillus cereus MM3]
 gi|228607456|gb|EEK64783.1| Sensory box protein [Bacillus cereus MM3]
          Length = 677

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 147/566 (25%), Positives = 270/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 116 EGASALSKSEQRYKSLFEDHPDAVFSLNMDGIFQQSNTACESLF--TAYYCEVESYSLLH 173

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ + + P    N +++   G
Sbjct: 174 FIDSKDHDLLKKALQITKEGRPQTL--EVRTKEKEGYYYYLHVTLIPTF-INKEVVGMFG 230

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T  N    VM +D+D
Sbjct: 231 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTSVN-DIAVMFLDLD 289

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +    A  A
Sbjct: 290 RFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPDMYSEKSAAFIA 349

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 350 EQILTVLNKPFFIKDEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFIF 409

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 410 FSKEISIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIV 469

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++        L  
Sbjct: 470 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHANLIP 528

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T      + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 529 TISKVLEETELKSEALDIEITESIAINQNQSVISKLEQLQNLGIQISIDDFGTGYSSLAY 588

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 589 LTKYPINTLKIAREFICGITNSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 648

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    +  LL ++
Sbjct: 649 NCDHIQGFLISKPVSSKDVWMLLHKK 674


>gi|309779464|ref|ZP_07674225.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308921705|gb|EFP67341.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 624

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 146/574 (25%), Positives = 262/574 (45%), Gaps = 37/574 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI---------RNWLPYIHIND 460
            V    + +      R      P  A +LGL   ++ G +           +   IH  D
Sbjct: 47  MVNALTEGILVCGADRRVTYANPSAARLLGLPVDALVGRLLPTVVTSAVDEFDASIHEAD 106

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD------------ 508
             +        +   + +L   F +   D +  W+     P+  ++G             
Sbjct: 107 WPD-----QDVIAEGQPQLNQIFGMHCVDGRTVWVSSNWTPLF-ADGSHSMTASARASEA 160

Query: 509 ---ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                  +    DIT+ +++ + I   A  D LTG+ NR +  DRL   L L+  + + R
Sbjct: 161 SATPYSVLVSLVDITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALARRNQS-R 219

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            +VM +D+D++K +ND LG   GD +L  +  R+    +  D +ARL G+ F ++L + +
Sbjct: 220 VSVMFLDLDRFKNVNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLEALD 279

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   A  +  +I+ P ++  +E+ +  SIG A         + +L+ A+ AMY AK
Sbjct: 280 GLGT-RRVAERILSAISAPFHIEGQELYLGVSIGIAVAPHDGDDPNTLLRKADAAMYLAK 338

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N+ ++F        S R  I+  L  A + +E Y  Y P + +    IV +EALI+
Sbjct: 339 ERGRNNFQTFTSDLDDRVSRRFRIESGLRRASDRNEFYADYQPRVDVRSGRIVSVEALIR 398

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+   +G++   +F+  AEE  +I  I+ ++L      +  WR    +P + + IN++ +
Sbjct: 399 WNSADFGHMMPGQFIQDAEETGLIVEIDRWILRAACDQLARWRR-IGLPDLRMSINLSGQ 457

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +L   ++  +  +    + ++L  +E +++ +      LL  LR +G+SL LDDF
Sbjct: 458 AFSSGQLSGMVRGALLTSGLPGNAVELEMTEGILIRDDPSLHALLTELRAMGVSLALDDF 517

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P DT+K + S +       +R AI R+II MA+ +    +A+ +   
Sbjct: 518 GTGYSSLSYLHRFPIDTLKIDRSFVQDLPHVVERAAITRAIIMMAQAMGMKTVAEGVETL 577

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ L  +GCD  Q   +  PL   ++  L++E
Sbjct: 578 GQLEFLREVGCDEFQGYLLTRPLEPAAVQDLVRE 611


>gi|152984254|ref|YP_001348582.1| sensory box-containing diguanylate cyclase [Pseudomonas aeruginosa
           PA7]
 gi|150959412|gb|ABR81437.1| sensory box-containing diguanylate cyclase [Pseudomonas aeruginosa
           PA7]
          Length = 858

 Score =  519 bits (1337), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/623 (22%), Positives = 262/623 (42%), Gaps = 17/623 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVVAAGLLFWLSRSALLNAHAVDRQQKVLKRSNQALQ 299

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   + L     +D 
Sbjct: 300 ASEERFKSIAEAASDWIWEVDARFVFTYLSTRFREVTGYQPAAWIGRRLDELLG---SDT 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            N    L+                R    Q     +    + N  GD   Y G   DIT+
Sbjct: 357 VNIVKWLEGLPDVGTPS-SLVCSFRDELGQARIGKLTATAIRNGAGD--GYRGTVADITD 413

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L   L  +         V+++D+D++K IND
Sbjct: 414 EVEAHAKIQHLSQHDALTGLPNRNKLFGFLERQL--AEKAGKSPLAVLMLDLDRFKPIND 471

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++ +   + L++  F I + + I
Sbjct: 472 QYGHPAGDAVLHAIAERLRASTRDLDMVARLGGDEFVVVSVHVTSRLEVEKFCIRLIEVI 531

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
              I   E+   V ASIG A  +        +L+ A++AMY AK  G N    +   +  
Sbjct: 532 NREILHDEQVFHVGASIGVALASEHGDDPRALLRCADVAMYEAKAAGRNTWRFYSEAMDF 591

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +++   + +L  A++  E  L Y P  R  +  I   EALI+W HP+ G I   EF+ 
Sbjct: 592 HLAEKKQREAELRAALQRGEFELYYQPRYRTEEGSIASAEALIRWHHPRRGMIGPDEFIG 651

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L +      SW  +     + + +N++    +  ++   ++  + 
Sbjct: 652 LAEESDLIVQIGNWVLRQACSSAASWPGE-----VMVSVNVSPAQFISGDIVWQVREALR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  ++ L    C  +Q 
Sbjct: 767 SIKIDKRFIANMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMRILRDEKCHELQG 826

Query: 938 SHVASPLGFNSILKLLKERFPLV 960
             ++ P+    +  LL+    L 
Sbjct: 827 FLLSRPVDGQRLQALLRSETALA 849


>gi|256823757|ref|YP_003147720.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256797296|gb|ACV27952.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 810

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/583 (24%), Positives = 260/583 (44%), Gaps = 14/583 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            +I    I  +       Q +    +     V  S D +  +D   +    +P +  + G
Sbjct: 227 AIIEIGSIHQIQKDFKTEQALRRKDKYYRTLVENSYDCILMYDRNMNVTYISPSVTRVTG 286

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G        I   DR+     L             E R+   D    W+  R+
Sbjct: 287 YTEEDLIGKTLEMF--IFEEDREEAEANLRYVAENPGALSVVERRINHKDGHILWIESRL 344

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                 + DI       + ITE+K++ + I   A  D LT +PNR     RL   L  S 
Sbjct: 345 VNHLG-DPDIQGVTVNFHVITERKQAEQKIHNLANYDPLTQLPNRYLLRKRLLKGLADSV 403

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +++ +  +M ID+D++K+IND LG +VGD +L ++ + I + L+  D LAR+ G+ F I
Sbjct: 404 KNES-KLALMYIDLDRFKEINDTLGHSVGDALLQTVAKTIHKCLRSSDTLARVGGDEFTI 462

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L  E +  +    A  + +    P       +   ASIG + +      + ++ + A++
Sbjct: 463 VLP-ETSEKEARYIAERILQQFRTPFKADSHTVQTGASIGISIFPDHSKKAEDLFRFADI 521

Query: 680 AMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           AMY AK  R    +   R S   + R  +++ L  A+ N  L L Y P + +    I  +
Sbjct: 522 AMYSAKKERNQYQLYELRHSERENRRRSVEKKLKTAIANDHLRLYYQPRVDIKSGAIKSV 581

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W  P  G+IS S F+ IAEE  ++  ++  + +   + ++SWR+        + +
Sbjct: 582 EALCRWYDPDHGDISPSVFIPIAEESTLVHELSQQVTDLACKQLVSWRNMGIDT--TVAL 639

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ KDL +  L       +       S +++  +ES  M +   +  +L + + +GI L
Sbjct: 640 NLSIKDLRNFNLLNQFADTMRTYDIPGSALEVEITESAAMTDVVNTVKVLNQFKDLGIKL 699

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETT 912
           ++DDFG   S L+YL  +P D +K +   ++  + ++        I+RSII +A++++  
Sbjct: 700 SIDDFGKGYSSLAYLSQLPVDNLKIDMYFVSQLSSQKQDRMINVNIIRSIISLAQSLDLH 759

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + + +     +  L  +GCD  Q      P+   +I  LL+E
Sbjct: 760 TVGEGVETIQQMSILQSLGCDMGQGMLFCRPMSATAITDLLRE 802



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 11/114 (9%)

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQF 492
            + +LG                +H +D    +           +  +  +FRV+  D ++
Sbjct: 150 FSNLLGYTQEEFEAMPEGVYSTVHPDDIPVVQEQEQRLSASDDKDVIPADFRVKKKDGEW 209

Query: 493 HWMIIRIRPM-SNSNGDILRYIGIANDI-----TE----QKKSLEGILCNAFQD 536
            W+ +       + +G+ +  IG  + I     TE    +K      L     D
Sbjct: 210 IWIQVHSTIYSRDEDGNAIIEIGSIHQIQKDFKTEQALRRKDKYYRTLVENSYD 263


>gi|65317327|ref|ZP_00390286.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 735

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLXETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|205372224|ref|ZP_03225039.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus coahuilensis m4-4]
          Length = 676

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 145/609 (23%), Positives = 285/609 (46%), Gaps = 22/609 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD----GER---QSLAVLG 413
           ++         +G ++   + + F ++   +      + +        ER          
Sbjct: 74  QVAFSFYTENKIGMILPFFVQLCFMLLSWFIPDILSEETLQKQYDQLKEREIWYHSLFEN 133

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +   V  +D   +   T P I  + G     +     ++ PY+H  D           + 
Sbjct: 134 NPVAVITFDHRGNIKHTNPKIFELTGYQEDYVVEH--SFKPYVHHKDHPIIYKEFKKALV 191

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                  +E R+   D +    +I + P+   N  ++    +  DIT  K++ + I   A
Sbjct: 192 GVGS--NFELRLIHQDGRILQTMIVMVPVLIEN-KVVGVHCLVTDITTSKEAEKKIHHMA 248

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D+LTG+PNR+ F      I         ++  ++++D++++K +ND LG A GD +L+
Sbjct: 249 YHDDLTGLPNRRYF----EQITAEIIKRQPMKMAILLLDLNRFKVVNDTLGHAAGDQLLI 304

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + RRI + +   D +AR+SG+ F ++L +      +   A  + KS+  PI + + EI 
Sbjct: 305 EIARRIDDKIGVQDHVARMSGDEFILLLPTIRGKADVFHIANHIHKSLEQPILINDHEII 364

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
            + SIG A +       + +LK A++AMY AK +G      +  S      + + ++ED+
Sbjct: 365 TSTSIGVAMYPDHGEDLTTLLKTADVAMYTAKKKGAAQTFFYSNSLHAKEINPIQLEEDI 424

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+++ +  + Y P    ++  ++G+EAL++W H   G IS   F+ +AEE  +I  + 
Sbjct: 425 RSAIKHEDFLIYYQPKFSTINGRMIGVEALVRWKHRHKGIISPGHFIPLAEETGLIIPLG 484

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +L ++   +  W +      I + +N++S+   D+   + ++ ++ +T  +P +I+L 
Sbjct: 485 AHVLRKVCLKLKEW-ESRGHKDIIVSVNVSSRQFHDDHFLQTVRDILIETGVNPRQIELE 543

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  M    R+  +L  L ++GI++T+DDFG + S L+YL     DT+K + S +   
Sbjct: 544 ITESTAMEQVYRAERILKELSELGITITIDDFGIEYSSLNYLKKFAVDTLKVDKSFIREL 603

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              E   AI+R+II MA +++  ++A+ +  E  +K L   GC Y+Q  + + P+     
Sbjct: 604 LTNESNQAIVRAIIVMATHLQLDLVAEGVETEEQLKWLQMNGCQYVQGYYFSRPIPCEEF 663

Query: 950 LK-LLKERF 957
            K  L    
Sbjct: 664 EKQFLTLHN 672


>gi|171060140|ref|YP_001792489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777585|gb|ACB35724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 745

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/567 (24%), Positives = 263/567 (46%), Gaps = 17/567 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +       R +     + + +   D              + G ++    G        +
Sbjct: 181 ERKHAESELRLAATAFEAQEGMMITDAHGVIERVNKAFTQMTGYSAAEAIGQTA---RLL 237

Query: 457 HINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           H    D  F   +   +  R G  Q E   R    + +   + I  + + +  + RY+G 
Sbjct: 238 HSGRHDPAFYAAMWDSL-QRTGTWQGEVWNRRKCGEVYAEWLTITAVQDEHRTVTRYVGT 296

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+++K   E I   AF D LTG+PNR+   DRL   + +SA        ++ ID+D 
Sbjct: 297 MLDISQRKAREEEIAQLAFYDPLTGLPNRRLLKDRLNQAMAISARSQR-EGALLFIDLDH 355

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL------ISENNSLK 629
           +K IND  G   GD +L ++ +R+   ++  D +AR+ G+ F ++L       ++  +  
Sbjct: 356 FKDINDTRGHDKGDLLLQNVAQRLSGCVREGDTVARIGGDEFVVMLGADLSTATDEAASH 415

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +  ++ +P  +    +  +AS+G A +     T  E+LK A+ AMY AK  G 
Sbjct: 416 ARSVAEKILAALNLPYLMSGEFVHCSASLGVALFNDHHDTVDELLKRADQAMYQAKAGGR 475

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N +  F  +  ++  +   ++ +L LAV+  EL L Y P+I   +  ++G EAL++W HP
Sbjct: 476 NTLRFFDTAVQQTMMLRAALEAELRLAVQRDELVLCYQPVIDHQN-RLLGAEALVRWKHP 534

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S +EF+ IAE+  +I+AI  ++LE     + +W        + + +N+++++L +
Sbjct: 535 RRGLVSPAEFIPIAEDRGLIQAIGRWVLETACTQLATWAADPATADLVLSVNVSARELHE 594

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E +  +++ T   P+R+K+  +E+ V+ + + S   + RL+  GI L LDDFGT  
Sbjct: 595 PQFVERVIEILACTGARPARLKIELTENAVLDHVDDSIAKMKRLKAHGIRLALDDFGTGH 654

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             LS L  +P D +K + + +          AI R+I  +  N+  +++A+ +       
Sbjct: 655 GSLSLLKRLPLDELKIDRTFVQDLLTDTHDAAIARTIAALGLNLGISVVAEGVETPAQRD 714

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKL 952
            L   GC   Q      P    ++ ++
Sbjct: 715 LLIACGCRIFQGDLFGPPAALEALARM 741



 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 386 VIQHVLATGYFSQGIFSDG-ERQSLAVLGSGD-----------IVWDWDIVRDRVTTTPD 433
            + H L        + +D   R  +A+  + D             +  D           
Sbjct: 38  AMAHELQVHRIELEMQNDELRRAQIALETARDRYIDLYDFAPVGYFTLDTNGLITEANLT 97

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQF 492
            A +LG A   + G  R +  YI   DRD + R  L        GR+  E  V+ A  + 
Sbjct: 98  GADLLGEARAKLVG--RRFERYIAPVDRDRWHRHALSLSRRGEPGRI--ELLVQGAGGRS 153

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +       ++   L  I    DI+E+K +   +   A 
Sbjct: 154 IHAQLDGLMARANHDAPLLRIA-LTDISERKHAESELRLAAT 194


>gi|264680504|ref|YP_003280414.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262211020|gb|ACY35118.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 900

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 262/566 (46%), Gaps = 15/566 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 ER  LA   V  + + V   D     ++       +LG +   M G   R +  
Sbjct: 327 ASREADERSRLASTVVDNTIEGVVVTDAHSRILSVNHAFTKLLGFSEAEMLGKTPRMFKS 386

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D+  +  +  S   +  G  Q E   R  + +     + +  + ++N  +  Y+ 
Sbjct: 387 GRH--DKAFYDAMWASM--HATGHWQGEIWNRRKNGEVFPERMSLSAVKDANDKVTHYVC 442

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+ +K   + +   A +D LTG+PNR  F   L   ++LS + +  R  V++ +ID
Sbjct: 443 MFTDISAEKAREQQLEFLAHRDTLTGLPNRSQFTRMLGEAVELSQSTNR-RMAVLLFNID 501

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND  G ++GD+VL  ++ ++   L+  DI+ RL+G+   ++  S        D A
Sbjct: 502 RFKDVNDSYGHSIGDEVLRHVSVQMQGALRHGDIIGRLAGDEICVVAQSICGRDSAVDVA 561

Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P        + V+ S G   +    +T+ ++L+ A  A+Y AK RG N   
Sbjct: 562 ERLMAAAGQPWTTPDGLSVVVSVSAGICLYPDHALTADDLLQGAHAAVYGAKARGSNAWC 621

Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  +      +R+ ++  L  A+E   + L Y P I L    +VG EAL++W  P+ G 
Sbjct: 622 FFHENMTQAARERLALEARLRRALELGHMRLYYQPQIELATGRLVGAEALLRWLDPEEGL 681

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS + F+ +AE   +I  + L++L    R    WR     P + I +N++    L  ++ 
Sbjct: 682 ISPARFIPVAENSGVIGPLGLWVLGEACRQGQQWRAAGL-PDLAIAVNVSLHQFLLTDIA 740

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
                 ++K+ +  S ++L  +ES +   PE +  +L RLR++G+ L +DDFGT  S L+
Sbjct: 741 GATAEALNKSGFPASLLELEITESALAEKPEEALAVLNRLRELGLRLAIDDFGTGYSSLA 800

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           +L   P D +K +   +     +   + I  S+I +   +   ++A+ +  +  +  L +
Sbjct: 801 HLKRFPLDLLKIDQGFIRDIPHSADDMTISSSVIALGHAMGLKVLAEGVETQEQLSFLQQ 860

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GCDY Q    + PL      +LL++
Sbjct: 861 KGCDYFQGYFCSRPLPAEDFTRLLEK 886



 Score =  101 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 99/328 (30%), Gaps = 21/328 (6%)

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
               V + ++    G L    ++      +        +       + ++    +  A+ 
Sbjct: 18  LYLCVGMLWLGAQAGVLG-YFDVSLNRQSLRWQIGLFIVWLLATALIALWFM--QRKARA 74

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVL-- 339
                     + ++   +              + +   L          ++G +  VL  
Sbjct: 75  DQRGRETAQELELVVRHAPAGMARVHVGGAEIVWANAKLAGWLGCSVESLRGQDFRVLVP 134

Query: 340 -------------LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
                        L+      F        A T ++   +   + V    +   +    V
Sbjct: 135 VNDQDDVALQLQRLLDGSTDYFQVLRQCVNADTGKVTPVLCTTSRVAASGVDGPVALVCV 194

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q +         +        LA+ GSG+ VW+WD +  R+  +  ++ +L      + 
Sbjct: 195 LQDLSEMVSARNAMMRSETMLRLALEGSGNGVWEWDALEQRLNFSTGMSALLRYQGQDL- 253

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               ++   +H  D    R   +  +      L    R+   D  + W   R +   + +
Sbjct: 254 AREFDFHQRLHPEDAAGARAQAEQALEQ-GSMLVLTARLLCFDGLYRWFRARGQAYKDES 312

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G ++R  G+ +D T  +++ E     + 
Sbjct: 313 GRLIRISGLLSDQTASREADERSRLAST 340


>gi|326315979|ref|YP_004233651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372815|gb|ADX45084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1120

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/574 (24%), Positives = 259/574 (45%), Gaps = 13/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
               V    + +  +     R +  V    D+V+  D     ++  P     LG     + 
Sbjct: 530  AVDVTEQKHLALELSQQRSRLASLVNAIPDVVFLKDASGRYLSCNPVFERYLGRRERDIV 589

Query: 447  GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            G        +   +    R + +  +   +  +  E    A D    +      P+ + +
Sbjct: 590  GLGDE--ELMTPIEAARVRQLDERAMAAWQPVVYEETLTFAEDGYAGYFETIKTPIRDMH 647

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G +   + ++ DIT++KK+ + I   AF D LTG+PNR+  LDRL         ++ L  
Sbjct: 648  GHVTGLLSVSRDITDRKKAEQQIELLAFFDALTGLPNRRLLLDRLQRAGAACQRNEKL-G 706

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             ++ ID+D +K +ND LG  +GD +LV + +R+ E ++  D +AR  G+ F ++L   + 
Sbjct: 707  ALLFIDLDNFKDLNDTLGHDMGDRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLEGLDA 766

Query: 627  SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                        A  +   +  P  +  ++   T SIG   +   + +  E+LK A+LAM
Sbjct: 767  DTAQAALQAEQVAEKLLAQLNRPFEMGAQQHYSTPSIGITLFGDQRRSVDELLKRADLAM 826

Query: 682  YHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N    F             ++ DL   +   EL +   PI+      + G E
Sbjct: 827  YQAKAAGRNTQRFFDPDMQAQVTARSQLESDLRQGIARQELTVHLQPIVDGST-RLCGAE 885

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W HP  G +S ++F+ +AEE  +I  +   +L+     ++ W          I +N
Sbjct: 886  ALVRWRHPVKGLVSPADFIPLAEETGLILPLGRQVLQTACEQLVRWAAHPATAAFTIAVN 945

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++++     +    +   ++ T  +P R+KL  +ES+++G+ E +   + +L+++G+   
Sbjct: 946  VSARQFRQPDFVAEVLGTLAATGANPQRLKLELTESLLLGDVEDTIGRMAQLKRVGVGFA 1005

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S LSYL  +P D VK + S +    +     AI+R+I+ +AK+++  ++A+ 
Sbjct: 1006 LDDFGTGYSSLSYLKRLPLDLVKIDQSFVRDVLTDPNDAAIVRTILALAKSLDLQVVAEG 1065

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +     +  L   GC+  Q      P+   +  +
Sbjct: 1066 VETAGQLSFLKLHGCEGFQGYLFGRPVPMETFER 1099



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 105/344 (30%), Gaps = 24/344 (6%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           +++G+A+  A+      +++          +       +++   F      + S  LL++
Sbjct: 87  LVVGLATA-AVCNFFHGVLSHQP-------LGVGQDAQVAVSHYFSLWGHGVESVTLLLF 138

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
              +  A        +   L      A V   T  G     +    +        S A +
Sbjct: 139 ALRASAAGPGMAWALVSALLSL----AIVWTATMDGPRDWLVASGHAPMRVAALVSGAFM 194

Query: 314 TLASIVLYYTY---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
            L++ + Y              G  R +      +    + + L                
Sbjct: 195 VLSACLFYGMRQRRTDAAVARHGRRRTMAAAAVAMATAQFLMALPPERFHWARMLAHALH 254

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW-----DWDIVR 425
           +VG  +L   +    V             +     R  L      D V      + D  R
Sbjct: 255 VVGYALLFQAVFIAGVRMPYARLREAESRLRESESRLQLLGRNLPDSVLYQMVREPDGRR 314

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             V     +  ++G+++  +    +     I   DR   +   D       G  +   R+
Sbjct: 315 RFVHMGEALERLVGVSAADVMEDAQRLFDRIDPEDRA-AQAEADEVSYRTMGVGESVVRM 373

Query: 486 RAADNQFHWMIIRIRP--MSNSNGDILRYIGIANDITEQKKSLE 527
           R  D    W+ +   P  +   +G ++ + G+  D+TEQ+++ +
Sbjct: 374 RRMDGAPRWIRLSSSPRLLKGGSGRVI-WDGVLTDVTEQREAQD 416



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 5/140 (3%)

Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              +Q +    E + +  +      +   D     +   P  A  L      + G   + 
Sbjct: 411 QREAQDLSRAHEIQLASLLGRMPGGISRLDRDLRILYVNPSQAQWLRRTPQELEGRRAS- 469

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +      +    +   +  R   + +++R         +    I P +  +G ++  
Sbjct: 470 -EVLSAELVQSLHPHMLQALQGR--PVVFDYRSPFRGEGPEFFHTTIIPETGPDGRVVAI 526

Query: 513 IGIANDITEQKKSLEGILCN 532
           +  A D+TEQK     +   
Sbjct: 527 MVFAVDVTEQKHLALELSQQ 546


>gi|144898353|emb|CAM75217.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 961

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 136/564 (24%), Positives = 264/564 (46%), Gaps = 16/564 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILG---LASGSMHGPIRN 451
               +     R         D ++       R+      +  + G   L    +   + +
Sbjct: 398 ALDELAESEGRFRTIFDHVNDAIFIHRADTGRLLMVNQRMRDMYGMGDLPVDRIDVGMCS 457

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +        +  L +    +  +   ++  R  D    W+ + +R    S+G   R
Sbjct: 458 --AGVSPYGAAEAQVWLRAAAAGQPQQF--DWHARRLDGSLFWVEVSMRLARFSDGQ-NR 512

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  DITE+K + + +   A  D LT +PNR    DR+   + L+  +   R  +M +
Sbjct: 513 LLVVVRDITERKNAQDRLEFMAHHDPLTELPNRLLLQDRVDRAIALAEREGR-RVALMFL 571

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG A GD +L  +  R+ + ++  D +ARL G+ F I+L +  ++  + 
Sbjct: 572 DLDQFKTVNDSLGHAAGDRLLKDVAWRLRQCVRESDTIARLGGDEFVIVLNAVRDADGVV 631

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           + A  + KS+A PI +  +E+T T S+G A +         ++K A+ AMYHAK  G + 
Sbjct: 632 EVAEKIHKSVAPPITIEGQEVTSTLSMGIAMFPEDGHDFDTLMKKADAAMYHAKESGRST 691

Query: 692 VESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F  R+++     + ++  L  A+E  E  L + P + L    +VG EALI+W+HP+ 
Sbjct: 692 YRFFAARMNADAVAHLALRSGLHRALERGEFQLYFQPQVSLTGGAVVGAEALIRWNHPER 751

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S +EF+ +AE+  +I  +  ++L +  R    W+       + + +N+++      +
Sbjct: 752 GLVSPAEFIPVAEDSGLIVPMGDWVLRQACRQAALWQA--GGHALTMAVNLSALQFRRGD 809

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   ++  + ++  +P  ++L  +ES+++ + E    +  RL  +G+ L++DDFGT  S 
Sbjct: 810 LERAVREALEESGLAPHSLELELTESIMIQDHEAVMDMTRRLGALGVQLSIDDFGTGYSS 869

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           ++YL     D +K + S +    +     AI ++II MA +++  +IA+ +     ++ L
Sbjct: 870 MAYLKRFAVDKLKIDQSFVRDVHTDTDNAAITQAIIQMAHSLKLEVIAEGVEVTEVVEFL 929

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
              GCD  Q      P+      K
Sbjct: 930 RDHGCDLAQGFLYGRPMTAQRFEK 953


>gi|330881640|gb|EGH15789.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 563

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 146/557 (26%), Positives = 266/557 (47%), Gaps = 14/557 (2%)

Query: 401 FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYI 456
            +D +R  LA      + + V   D     V        I G  +  + G     +    
Sbjct: 1   QADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPSKFKSGR 60

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H    + ++ +  S +    G+   E   R    + +     IR +   +G    ++ + 
Sbjct: 61  H--GPEFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPRHFVAVF 116

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT  K+S + +      D LT +PNR    DR++  L  +         +++ID+D +
Sbjct: 117 SDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQALTSARASKRG-CALLLIDLDHF 175

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ A  A  
Sbjct: 176 KNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQAAALAQQ 235

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G      + 
Sbjct: 236 VIDALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRECYALYT 295

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +    RV +  +L  AVE  +L + Y P   L+   I G+EAL++W HP+ G +S 
Sbjct: 296 EELTAHAQQRVQLAYELRQAVELEQLRVFYQPAHDLVTRRIRGVEALVRWQHPERGMVSP 355

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     +L   +
Sbjct: 356 GEFIPIAEQSRLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHGDLDRRV 414

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S L  L 
Sbjct: 415 AQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLK 474

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        L   GC
Sbjct: 475 RMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAFLLGNGC 534

Query: 933 DYIQDSHVASPLGFNSI 949
              Q    A P+   +I
Sbjct: 535 QLGQGYWFARPMVAQAI 551


>gi|90424616|ref|YP_532986.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90106630|gb|ABD88667.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 823

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 268/563 (47%), Gaps = 23/563 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    +   L    +   +W +D      ++         G    S    +R  L  I 
Sbjct: 265 SLKKREDSFRLLFDNNPMPMWVFDAKTTEFLSVNDAAVQHYGFERESF---LRMKLQDIW 321

Query: 458 INDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMS--NSNGDILRYIG 514
             D       L S +           +R   AD     ++   R ++    +G ++  + 
Sbjct: 322 PEDEREV--HLRSVLQVGDTHYSGRNWRHLRADGSEIEVLTFGRQVAFEGRDGFLVAVV- 378

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DITE++K+   I   A  D LT +PNR S+ + L   L+LS    N +  V+ +D+D
Sbjct: 379 ---DITERRKAEAKIAFMAHHDGLTNLPNRGSYQEHLHQALELSRRC-NSKVAVLCVDLD 434

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND  G   GD +L  +  R+ + +   D++ARL G+ F I+L + N+  + +DFA
Sbjct: 435 LFKNVNDSFGHPTGDRLLQKVADRLRQQVGGNDLVARLGGDEFAIVLGAINSPNEASDFA 494

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +++P ++   E+ + ASIG A          E+L+NA++A+Y AK  GG     
Sbjct: 495 AKLIEILSVPYDMDGPEVVIGASIGIALSPGDGDDGEELLRNADMALYRAKAEGGGTHHF 554

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F          R  ++ DL  A    E  L Y P++ L ++ I G E+L++W HP+ G I
Sbjct: 555 FEREMDRQAQKRRDMEIDLRRAFTKGEFELYYQPLVNLAEDRITGFESLLRWRHPERGMI 614

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AE++ +I  +  ++L +   + + W        I + +N+++       L +
Sbjct: 615 SPADFIPVAEDIGLIVGLGEWVLRQACAEAVKWPS-----DIKVAVNLSAVQFRCRSLVQ 669

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A ++++  SP+R++L  +ESV + + E +   L +LR++G+ +++DDFGT  S LSY
Sbjct: 670 VVIAALAQSGLSPTRLELEITESVFLADTEANLATLHQLRELGVRISMDDFGTGYSSLSY 729

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K + S +         +AI+R+I  + +++  T  A+ +     +  L   
Sbjct: 730 LRSFPFDKIKIDRSFVKDLADRPDCLAIVRAISGLGRSLNITTTAEGVETLDQLDWLRAE 789

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
           GC+ +Q    ++      I  LL
Sbjct: 790 GCNEVQGYLFSAARPSGEINDLL 812


>gi|288940694|ref|YP_003442934.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288896066|gb|ADC61902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 811

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 158/582 (27%), Positives = 268/582 (46%), Gaps = 27/582 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           I  V A    +Q +  D +   LA      S D ++  D     V   P    + GLA  
Sbjct: 233 IGRVYAFRDITQRL-HDEQGLKLAARVFEASLDAIFVTDPEFRIVAVNPAGERMTGLAGA 291

Query: 444 SMHGP-----IRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            + G      +R W    +  +     R  LD     R G  Q E     AD      ++
Sbjct: 292 ELVGQRLDRSLRLWANETLDPD----IRAALD-----RSGHWQGEIEQHHADGSTFPCLV 342

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + ++ G    Y+G   D++E  ++ + I   AF D LTG+PNR    +RL   ++L
Sbjct: 343 SLMRVLDTEGLPFHYVGFVKDLSETVEARQRIEQLAFNDALTGLPNRLRLTERLEFSIEL 402

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +   +N R  V+ IDID++K IND LG   GD VL+ + +RI + L+  D +ARL G+ F
Sbjct: 403 ARR-ENTRFAVLFIDIDRFKHINDSLGHVFGDRVLIEVAQRIRQCLRHVDTIARLGGDEF 461

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L    +       A  + +S+A P  L   + +++ SIG A +     T  +++KNA
Sbjct: 462 VLLLHRVES-HGAELVARRLLESMAQPFELDGLKFSLSCSIGIALYPEDGETLDDLIKNA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMYH K  G      ++        +RV I   +  A++    +L Y P I L+   +
Sbjct: 521 DSAMYHVKEHGRGDCCFYQRQMNVGLLERVRIDHAMREALQQGHFWLAYQPQIDLVSGLV 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EAL++W+ P  G ++   F+ IAEE   I A+  ++L    R    W+ Q     + 
Sbjct: 581 IGAEALVRWNDPDLGELAPGRFIPIAEETGFIVALGGWVLREAIRQGAHWQAQGIR--LS 638

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++         + +   + +T   P R++L  +ES+++ N E +   L  L  +G
Sbjct: 639 LSVNVSATQFHQANFIDLLAQWLDETGLPPGRLELELTESILIQNVEETLRRLENLVALG 698

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           + L +DDFGT  S L+YL   P   +K + S +      E   AI  ++I +A  ++  +
Sbjct: 699 VRLAIDDFGTGYSSLAYLKRFPIHKLKIDRSFVCDIPHDESDTAIATAVIGLASVLKLRV 758

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           IA+ +  +I  + L   GC   Q    A  L   + L  + +
Sbjct: 759 IAEGVETDIQRQFLLDAGCHEFQGYLCAPALEPAAFLARIAQ 800



 Score = 47.6 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 416 DIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           D VW  D   +  +        +LG    S+ G   + L      D        +     
Sbjct: 17  DAVWLVDGSDQRLLAVNRAAEELLGQGRASLVGRSMSELACT-PED----LFFWEDVAAG 71

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           R   L  E  +R  D     ++ R+  +S  +G  L Y+   ++ +E++     +   
Sbjct: 72  RGDTLLSETLLRRQDGTLVTVLRRVGRVSCPDGRCL-YLACFSNQSERRAVESELEKL 128



 Score = 41.1 bits (95), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 38/148 (25%), Gaps = 15/148 (10%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +          +  S D +   D+     +     A +  L +  +      
Sbjct: 117 ERRAVESELEKLVAELRATLESSADGILVTDLDGAIRSFNQRFAELWRLPAALLTERNDA 176

Query: 452 WLPYIHI------NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               IH        D + +   L +              +R        ++ R+     +
Sbjct: 177 ---GIHDWMVREVLDAEGYAARLQAIAQNPLLEASDLLTLRQG-----RVLERVTLPQYA 228

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA 533
            G  +  +    DIT Q+   E  L  A
Sbjct: 229 RGRPIGRVYAFRDIT-QRLHDEQGLKLA 255


>gi|229124804|ref|ZP_04253983.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228658679|gb|EEL14340.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
          Length = 909

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+L+++      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392
              ++ I    +   I  IGL +  +  L    +       L+L  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|71909600|ref|YP_287187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
 gi|71849221|gb|AAZ48717.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
          Length = 1665

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 128/568 (22%), Positives = 243/568 (42%), Gaps = 13/568 (2%)

Query: 399  GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                  ERQ LA      + + +   D   + +        + G +     G   + L  
Sbjct: 967  ERLMAEERQQLAASVFDNAHEGIMITDPKGNILEVNATFTELTGYSRAEALGNTPDMLKS 1026

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             H +D   +  +         G  + E   R    +     + I  + N +G +  ++ I
Sbjct: 1027 GH-HDPAFYEEMWQKIRD--DGYWRGEIWNRKKSGEIFVEQLTISSVRNRDGALSNFVAI 1083

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DIT  K+  + +   A  D LT +PNR    DR+      +         V  +D+D 
Sbjct: 1084 FSDITLLKQHQQRLEHLAHFDALTQLPNRMLLSDRMQLAKAQAERSGKT-LAVCYLDLDN 1142

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K IND  G +VGD +L+ + +R+   ++  D +ARL G+ F +++ + ++  +      
Sbjct: 1143 FKPINDRYGHSVGDFLLIEVAQRLKTCVRAGDTVARLGGDEFVLLITNLDDLNECDHAMT 1202

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +  +++ P  +  + +TV+ASIG   +      S  +L++A+ +MY AK  G N    F
Sbjct: 1203 RVISALSQPFRVSAQFVTVSASIGVTLYPHDGSDSDTLLRHADQSMYAAKQEGRNRYHLF 1262

Query: 696  RVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               + R  R+  +E   +   + N E  L Y P + + +   +G EALI+W HP+ G + 
Sbjct: 1263 DPENDRRARLRREEIGQIREGLANGEFKLYYQPKVNMREGSFIGAEALIRWQHPERGLLL 1322

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+   E   +   I  ++++   + I +W        + + INIA   L        
Sbjct: 1323 PDSFLPALEGSELAIDIGDWVIQEALKQIDAWHRTQG-IDLSVSINIAGIHLQHPGFSRR 1381

Query: 814  MQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L++     +P +I+L   E+  + + + +  L    R +G++  LDDFGT  S L+Y
Sbjct: 1382 LGELLAAYPNVTPGQIELEVLETAALEDIQTTAELFAECRNLGVTFALDDFGTGYSSLTY 1441

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
               +P D +K + S +         +AI+  +I +    +  +IA+ +        L  +
Sbjct: 1442 FRRLPADMLKIDQSFIRNMLDDTDDLAIVEGVIGLTHAFKRQVIAEGVETVEHGLVLLLL 1501

Query: 931  GCDYIQDSHVASPLGFNSILKLLKERFP 958
            GCD  Q   +A P+    +   ++   P
Sbjct: 1502 GCDMAQGFGIARPMPPEQLPDWIRHFQP 1529



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIV 418
             L   + +  L+  L L +I       Q +           +  ER   A+      +V
Sbjct: 233 GNLAGLLSEHTLMSPLKLGLIDDALIDRQALARAREAMLDETARNERYQRALLDNFPFLV 292

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W  D     +T    +A   G  S S+ G                +R    + +  R+ +
Sbjct: 293 WLKDTESRLLTANRAMAKAAG--SDSVIGKTD--RELWPPELASAYRADDLAVMASRQNK 348

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +  E  +   D Q  W      P+   +G +L  +G A DI+E+K++ E + 
Sbjct: 349 IVVEPIIV--DGQTVWHETYKAPVIADDGTLLGTVGFARDISERKRAEEAMQ 398



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 8/158 (5%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L+ +          L      +      E  S       D ++  D     +     +A 
Sbjct: 829 LLSLEKLSGQFSQALHRLAAQEEARRLQENLSGLFDTLTDFIFILDQAGRILHYNRAVAE 888

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWM 495
            LG    ++ G     +  +H  +       +    +  R  R      +  A  +   +
Sbjct: 889 DLGYGQNTLKGKT---IAAVHPENLRQIAEEVTVDIISGR--RYSCPLPILCASGEQIMV 943

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             R+      +G     IGI+ DI+E+  + E     A
Sbjct: 944 ETRVVNGYW-DGQPA-LIGISQDISERLMAEERQQLAA 979



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 59/226 (26%), Gaps = 33/226 (14%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSG 415
            +L                  L        + A     Q    D ER            G
Sbjct: 519 GQLLGTFTAYYPSPTSPHEDYLGLLLQAAQLTALVIERQNSSQDLERSLATFRGIFDSIG 578

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVG 473
           + ++     R  +        + GL+  S+ G        I     D +     + + + 
Sbjct: 579 EALFIQGEDRRFLDVNTSAEQMFGLSRASLIGQTHE--SLIAPGMLDLEAIDQAISTALA 636

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 +   R      +   + +R+   ++  G  +  I  A DI+E+K +   +    
Sbjct: 637 GTPQAFETLARSSTE--RIFPIEVRLHT-ASYFGRPV-LIASAVDISERKNAELRLEVE- 691

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-----VIDID 574
             D              L   L      D +   ++       D+D
Sbjct: 692 -HD--------------LAQALASGMQRDEVLGALLKAIQRFPDLD 722


>gi|222111019|ref|YP_002553283.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax ebreus TPSY]
 gi|221730463|gb|ACM33283.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax ebreus TPSY]
          Length = 1294

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/574 (24%), Positives = 250/574 (43%), Gaps = 11/574 (1%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +  +       Q +    E  SL +  +   +WDW++    VT       + GLA     
Sbjct: 696  LHDITERKQTEQRVREREELLSLTIEAAALGLWDWNLPSGEVTGDARWRAMYGLAPVEPG 755

Query: 447  GPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
                 +W   I   D D     L   +            V A      W+    + +  +
Sbjct: 756  ASAAVHWASGITPEDIDVVTQELQRHLQEPHKPFDVTCEVLAPQGDGRWIRSVGKVVAYD 815

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            + G   R +G++ D++ Q+     +   A  D LTG+PNR     RL   ++ S      
Sbjct: 816  AAGQPARMVGMSIDVSSQRAQERQLERMAHYDALTGLPNRVMLERRLRAGMEHSRARGQ- 874

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            +  V  +D+D +K +ND LG A GD +LV +  R+   L+  D +ARL G+ F I+L   
Sbjct: 875  QLGVAYLDLDGFKPVNDRLGHAAGDRLLVVVAERLKRALRLTDSVARLGGDEFVILLSGL 934

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             ++ +       + +S+A P  L    + VTASIG+  +   +  +  +L++A+ AMY A
Sbjct: 935  AHAEECERRLHTVMESVAAPYTLDGERVLVTASIGYTLYPDDEADADTLLRHADQAMYAA 994

Query: 685  KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K  G N    F  +  R+ ++  ++  +L  A++  EL L   P + +    +VG EAL 
Sbjct: 995  KQAGRNRFHGFDAAEERARQLRREQCGELLRALQRGELTLFLQPKVDMRLGTVVGAEALA 1054

Query: 743  QWDHPKWGNISSSEFMLIAE-ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W HP+ G +S   F+ + E    +      ++++   + I     Q     + + INI 
Sbjct: 1055 RWQHPERGLLSPVHFLHLIEGHTELQMRFGEWVVDTALQQIARLMAQGLE--LPVSINIT 1112

Query: 802  SKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
             + L      + M   +++        + +  +ES  + + +     L RLR +G+ ++ 
Sbjct: 1113 PEHLHRRGFADWMALRLAQHPAVPARLLAIELTESAALYDIDHVARELTRLRALGMQISF 1172

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S L+YL  +P D +K + S + G        AI++ +I +A +    I+A+ +
Sbjct: 1173 DDFGTGYSSLAYLRRLPMDHLKLDRSFVAGMLGDAGDRAIVQGVIGLAHSFGCGIVAEGV 1232

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                    L +MGC + Q   +A P+     +  
Sbjct: 1233 ETVEQGLALLQMGCHHAQGYCIAMPMPVEQFMDW 1266



 Score =  101 bits (251), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 79/245 (32%), Gaps = 19/245 (7%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG----LW 355
           S +        A I+L++            G      A+ L+ A  ++    +       
Sbjct: 91  SGWLDAPAHWGAMISLSAACWLMGCLAWLLGRSTRLTAISLVVALTVLVPPALLPWTETA 150

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
            A+  +  +   Q         +V L G   +    A     Q +    +     +  SG
Sbjct: 151 SALAAQEGSAPWQGIPWRYAFGVVALCGAVELLRARARSL--QTLGQHEDELLRVLKASG 208

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASG------------SMHGPIRNWLPYIHINDRDN 463
              W+WD+   R T         GLA+              +    + W    H +DR+ 
Sbjct: 209 GGRWEWDLRNSRFTYHGRFYRAFGLANSPDDEDFTPLRAFDVRESWQRWNARRHPDDRER 268

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522
               L             E R+R  +  + W++ R   +  +S G +LR  GI  DITE 
Sbjct: 269 LGAYLQRVQDGLEESFHAESRMRDDEGHWRWVVSRGHAVERDSAGRVLRMAGIDLDITEH 328

Query: 523 KKSLE 527
            +  +
Sbjct: 329 HEMRD 333



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V   +         + +       A   +   VW+ +  +     +     I GL  G
Sbjct: 443 VFVFHDMTQERRVRDELLAANRLLRQAGWMARLGVWEEEPGKGITYWSDVCFDIHGLDPG 502

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +          ++    R+     L   +  +R     E  +  AD +  W+ +R  P+ 
Sbjct: 503 TPLPR-DYVQQFVAPVWREAMHAALRDCLR-KRTVWSQEIEIVRADGRLVWVRVRGEPII 560

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
             +  ++R  GI  DI E +++ + + 
Sbjct: 561 EGD-RVVRVRGILQDIDEPRRAAQRLR 586



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLASG 443
            ++Q +      +Q + S  ER +         + +        +   P     LG    
Sbjct: 570 GILQDIDEPRRAAQRLRSSEERLARIFQLLPYPLGFSRREDGTYLDVNPAWEQALGYTRQ 629

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G     L           R  L          + YE  +         ++  + P+ 
Sbjct: 630 EAVGRTVVELGIYS----APTRAALLEAATAEGQLVGYELELTTRGGDKRTVLQSMSPI- 684

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
             NG+     G  +DITE+K++ + + 
Sbjct: 685 EVNGEACWLFG-LHDITERKQTEQRVR 710


>gi|167635770|ref|ZP_02394080.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|254742267|ref|ZP_05199954.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|167528879|gb|EDR91636.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
          Length = 735

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 270/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q +   + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-DFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|297190328|ref|ZP_06907726.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722426|gb|EDY66334.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 720

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 153/702 (21%), Positives = 279/702 (39%), Gaps = 28/702 (3%)

Query: 274 HWNRWHAKVGYITFSGIACIAI-------LFCMSFYYPMVTASIARITLASIVLYYTYFI 326
              R+        F   A           L  ++        +      A+  +      
Sbjct: 20  RLRRFATIWSRAIFPATATSLTRPEFEQHLLPLARELNSALHARPFTAQAAHQVGAALVG 79

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
            +          L +    L+         A   R     +Q AL  G    +       
Sbjct: 80  AHCTDPDALGRTLGVVDAYLVLYCGDPEQTAEENRARCARLQHALAAGFAQALRERTLAE 139

Query: 387 IQH-----VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            +      +LA     Q + +   R      G+   +   D+  + +     +  + G  
Sbjct: 140 QESIARSSLLARSEALQAMHATEARFRAVFEGAAIGIGIADLEGNVLEVNDTLTQMFGGL 199

Query: 442 SGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              + G  + +W    H  DR     +    V   R   + E      D    W  + + 
Sbjct: 200 ENHVRGRKVTDWA---HPEDRPQVWQLYQELVTGEREHYRVEKPFYRNDGTVLWTNLTVS 256

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +++G+    + +  D TE++     +   A  D LTG+PNR  F +RL   +   A 
Sbjct: 257 LLRDADGEPQYQLALFEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKAVSAPA- 315

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGI 619
               R  +  +D+D +K IND LG A GD +LV +  R+        +++ARL G+ F  
Sbjct: 316 --GARFGLCYLDLDGFKTINDSLGHATGDRLLVEVADRLQSCATAPGEMVARLGGDEFVA 373

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +    +    + + A  +  ++A PI +  RE TV  SIG     + + TS+E+L++A++
Sbjct: 374 LTTGPDTQNAVDELATRILAALATPIRVDGREFTVRGSIGIVEGPAGERTSAEVLRSADI 433

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            MY AK  GGN  E     +         +   L  A++  E ++ Y P++ L D  + G
Sbjct: 434 TMYRAKSAGGNRFEIADPEADARAITRHGLTNALPAALDRGEFFIEYQPLVHLGDGSVHG 493

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFI 796
            EAL++W HP+ G +    F+ +AE   +I  +  ++L+   R    W R   +  P+ I
Sbjct: 494 AEALVRWCHPQHGVLGPDRFIPLAERTGLIVPLGRWVLQEAVRQARFWSRRHTDGGPLRI 553

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L    L      ++ ++   P  + L  +ES ++G  E     L +L ++G+
Sbjct: 554 NVNLSPAQLQHPGLVADTVDVLERSGLEPGALCLEVTESALIGADEDRLKPLRQLAEMGV 613

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911
            + LDDFGT  S L+ L  +P   +K + S   G          + I+  I+ +A ++E 
Sbjct: 614 DIALDDFGTGYSNLANLRRLPVSVLKLDRSFTQGMQRHPADPVDLKIVEGIVSLAHSLEL 673

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  + +      ++L  +GCD  Q  + A P   + I  L+
Sbjct: 674 AVTVEGVETAAQAEQLRELGCDTAQGWYYARPGAPDRIHTLV 715


>gi|238784612|ref|ZP_04628618.1| Sensory box-containing diguanylate cyclase [Yersinia bercovieri
           ATCC 43970]
 gi|238714481|gb|EEQ06487.1| Sensory box-containing diguanylate cyclase [Yersinia bercovieri
           ATCC 43970]
          Length = 853

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 136/581 (23%), Positives = 271/581 (46%), Gaps = 15/581 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    +            + +  ER       + D +W+ D        +    TI GL
Sbjct: 282 LVLRRAMSEAQIADENRAALIASEERFRHVAEAATDWLWETDANLRITYLSQRFLTITGL 341

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +     G   +    ++         +  + +   R  LQ  +   +A  +     I  +
Sbjct: 342 SVEHWLGRNLD--SLLNCEIIPLRSWLQHTHLTESRNELQCTY--FSAQGEKRICRIYAK 397

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+   NG+ + + G A+DIT + ++ E I   +  D LTG+PNR    + L   L   A 
Sbjct: 398 PII-KNGETIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLRNLAA 456

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             +    ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +I
Sbjct: 457 SPHP-LVILNVDLDKFKPVNDTFGHIAGDKVLHQVSERLRSCLRDQDLVARQGGDEFILI 515

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   ++  +I      +   I  P  + +++I ++ASIG A      + + E+L+ A++A
Sbjct: 516 ITGLSSIKEIEQLCARVITHIESPYVINDQDIYISASIGIALAPQDSMQAEELLRFADIA 575

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK+   NH   +             ++  L  AV+++E  L Y P  R+   ++ G 
Sbjct: 576 MYEAKNSDLNHWSFYSSEMNDRLMQRSELERFLRQAVKHNEFSLYYQPRYRIEGTQLTGA 635

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G +   +F+ +AEE  +I +I+ + + +  +D  +W      P + + +
Sbjct: 636 EALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACQDASTWH-----PSLIVSV 690

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI++ +     L E ++ ++  T     R++L  +E +++ + + +   +  L+ +G+ L
Sbjct: 691 NISAIEFRSQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRL 750

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ A+
Sbjct: 751 SMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAESHEGQSIVEGIINLGHALSMTVTAE 810

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +  E  +  L  + CD +Q   +  P+  + +  L++  +
Sbjct: 811 GVETEAQLGYLQSLMCDEVQGYLLGKPMRLHDLSVLIRNAY 851


>gi|324329298|gb|ADY24558.1| hypothetical protein YBT020_26680 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 892

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 184/843 (21%), Positives = 347/843 (41%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 54  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 113

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 114 GFAIKFIKHYSIRGLAQFSFDSIFIVIMNIYFTLTFILDISSFRMLTTDTWVLIGYFIAQ 173

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 174 SLVIYAVISLYRREEYSSSRISLIIGFTIILVYGYIHLFQLNTGIKPSSEVSYLIHTASI 233

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K + ++          V  +                      +LIG 
Sbjct: 234 LLIGLSSILYILDKPIQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 293

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R         D 
Sbjct: 294 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEDKVEEGASALSKSEQRYKSLFEDHPDA 353

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I + D D  +  L      R  
Sbjct: 354 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDLKDHDLLKKALQLTKEGRPQ 411

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L  E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 412 TL--EIRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 468

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ + T  N    VM +D+D++KKIND LG  VGD +L+ + +
Sbjct: 469 LTGLPNRRKFEKDLKNILNTAQTSAN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAK 527

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  + + E+++T S
Sbjct: 528 RLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILTILNKPFFIKDEELSITPS 587

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F      +      ++ +L  A+
Sbjct: 588 IGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNESNFLEGELSKAL 647

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++++G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 648 QQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 707

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 708 RTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 766

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 767 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 826

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 827 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 886

Query: 954 KER 956
            ++
Sbjct: 887 HKK 889


>gi|207728048|ref|YP_002256442.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591292|emb|CAQ56904.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 903

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 261/575 (45%), Gaps = 12/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447
            +   +  + +    ER  LAV    + +         +   P    IL  G  S     
Sbjct: 325 AVQKAHIVRELQDSEERYRLAVDNLTEGILVQSADGIILACNPSARRILRAGDTSPVGES 384

Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            +      +  +  +           +   R  L     +   D    W+   + P+   
Sbjct: 385 HLTLMRRSLREDGSEIPVLERPTRVVLSTGRPLLGLTIGLELVDGDVVWVYENVLPIMRP 444

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +   NDI   + + + +   A +D LTG+ NR  FL R+  +LD +ATD   
Sbjct: 445 GDDTPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDGAATDGR- 503

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L   
Sbjct: 504 QVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQADTLARLGGDEFVVLLDHV 563

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +  +IA P +    E  + ASIG A        ++ +L+ A+ AMY+A
Sbjct: 564 RSLDEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGRDAATLLRCADAAMYNA 623

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F          R  +++ L  A+   EL L Y PI+  +   IVG EAL+
Sbjct: 624 KQNGRNQHRVFTERLSQRAQRRFQLEQHLRRALSAQELSLRYQPIVDAISMGIVGAEALL 683

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   + G++S +EF+ +AE+  +I AI  ++LE+  R    WR+    P  FI +N++ 
Sbjct: 684 RWHSAELGDVSPAEFIPVAEDAGLITAIGEWVLEQACRQAAHWRNTCA-PDFFIAVNLSP 742

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   +   ++++      +++  +E ++M +      +L  L  +G+ +++DD
Sbjct: 743 RQFGD-GLVPTLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +  
Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFISGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GCD +Q     +P+   +  + L+ 
Sbjct: 862 LEQAEFLQAAGCDKLQGFLFGAPMSAAAYEERLRR 896



 Score = 42.2 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 7/141 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458
           +    +R    V    D ++        V        +LG  ++  + G   +   +IH 
Sbjct: 23  LPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSAHDIVGRELD--AFIHE 79

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +     R   +  + +  G    E  +   D     + +   P+    G       +A D
Sbjct: 80  DSMQLARQRREWMIEHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAVQVVARD 137

Query: 519 ITEQKKSLEG-ILCNAFQDNL 538
           I ++K++ +      A    L
Sbjct: 138 IRQRKQAEQALRESEANYRAL 158


>gi|83745662|ref|ZP_00942720.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551]
 gi|207739491|ref|YP_002257884.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|83727739|gb|EAP74859.1| Sensory box/GGDEF family protein [Ralstonia solanacearum UW551]
 gi|206592870|emb|CAQ59776.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 797

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/580 (24%), Positives = 271/580 (46%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LAV    + V    +    +        IL + SG + G  
Sbjct: 212 AIQKDTTERGLAESEERYRLAVSHLNEGVLIQALDGVVLAANASAERILRVRSGQLVGRN 271

Query: 450 R--NWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNS 505
           R       +  + +D     L S +  + G   L   + +     +  W  + I P+   
Sbjct: 272 RFDMMQRVVDEHGKDVALDALPSKLVGQSGEPILGRIYGLLLKTGELIWARMNIIPIRRH 331

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +    DIT+ K++ + +   A  D LTG+ NR  F+  L + ++ +  D++ 
Sbjct: 332 GDAAPTSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLDSAIERA-RDESR 390

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 391 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 450

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
              ++IA  A  +  ++  P + +     +  SIG A +    I+ +++L++A+ AMY A
Sbjct: 451 VEGMRIAQLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYRA 510

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A +NSEL LVY P   L    IVG EAL+
Sbjct: 511 KQNGRNRAQFYTAELNARLQRRYLLETALRDARDNSELQLVYQPKYDLASHRIVGAEALL 570

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G +S  EF+ +AEE  +I  I  ++L R     ++W          + +N+++
Sbjct: 571 RWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLSA 629

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  +++T   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 630 RQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 689

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S + G       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 690 FGTGYSSLSYLQRFPISNVKIDRSFILGIPSDPDSVALTEAIVAMARALGMTVTAEGVED 749

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+  +   +LL+    +V
Sbjct: 750 ADQVEFLAKAGCQEIQGYYIGKPVTADGFDRLLRAHLAVV 789


>gi|301056768|ref|YP_003794979.1| sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|300378937|gb|ADK07841.1| sensory box/GGDEF family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 909

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 166/870 (19%), Positives = 347/870 (39%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274
            + +   + +         L  L+ +      +     ++       + L+      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMADLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKKPEKQEQILLTPKLGESIRLLLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    +  D +            +   +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLTYEEDLEEIINAFHRVKKGK--SISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKK-PFAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKVINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DYLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato T1]
 gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato T1]
 gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 705

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/584 (23%), Positives = 262/584 (44%), Gaps = 12/584 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H +      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKSHSMILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT++K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITQRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A     +   + +++D +K IN+  G  +GD VL+ ++ R+ E +   D L R+ G
Sbjct: 297 LTQAAVS-RWKLATLTVNLDGFKNINETWGHVLGDQVLLEVSHRLSECINASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +RK++ +P  +  + I +TASIG A +      + E++
Sbjct: 356 DQFALILMIRVGQPDTRQTLERIRKALRVPFMVEGQSIVMTASIGIALYPEDGEDARELV 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  AK  G +    +          R+ ++  L  AVE     +VY P + L+ 
Sbjct: 416 RHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVEKQAFEIVYQPKLSLVT 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I GLEAL++W  P    +S + F+ + E L +I  +  ++++R+   I  W+      
Sbjct: 476 GRICGLEALLRWPRPGQQGVSPAVFVPVLESLGLIGEVGNWVVDRVCAQIAHWQRTGLGL 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++ + + ++ L   ++  ++    +P  +++  +ES +M N   +   L  L+
Sbjct: 536 -FQVAVNVSGQQISNSSLVADIRQALTNHRVAPQWLEVELTESSLMENTSHTIATLETLK 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A ++ 
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLG 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +IA+ +     +  L    CD IQ   ++ PL    +   L 
Sbjct: 655 LKVIAEGVETPEQLAFLRDNQCDQIQGYLISKPLPLAELETFLS 698


>gi|157959960|ref|YP_001499994.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella pealeana ATCC 700345]
 gi|157844960|gb|ABV85459.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella pealeana ATCC 700345]
          Length = 1072

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 261/565 (46%), Gaps = 14/565 (2%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                 + S     S + +   D         P    I G     + G   + L   H   
Sbjct: 502  RRALHQASAVFRHSAEGIIVTDANNHIELVNPAFTKITGYTLDDVKGKSPSILSSAHHQ- 560

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             ++F   L   +  +    + E   +    + +   ++I  + NS    +++IG+  DI+
Sbjct: 561  -EDFYQQLWRSLSSKN-SWEGEIWNKRKGGKIYPEYLKITAVKNSKNKTIQHIGLFLDIS 618

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
              K+  + I      D+LT +PNR  F  RL   +D +  + N +  +  ID+D++K IN
Sbjct: 619  NNKQYEQDIWYKTNFDSLTKLPNRHLFSSRLQQAIDSA-HNTNSQVAIFFIDLDRFKFIN 677

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            ++ G A G+ VL     R+  +L   D +AR+ G+ F +I     N       A  +  +
Sbjct: 678  ELHGHAAGNKVLKQSATRLEAVLGPDDSIARIGGDEFVVISPQTGNVG-AEQLAQKLSDT 736

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +A P     +E  +++S G A +         +L N+E AMY AK  G  H + F     
Sbjct: 737  LAKPYLFDNKETIISSSFGIAFYPEDGQDIEMLLHNSETAMYQAKRDGRAHYQYFSPEMN 796

Query: 701  RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+ +++ L  AV+ SE YL Y P+I +   E+  +EAL++W  P +G IS   F+
Sbjct: 797  VEMLERMHLEQRLRKAVKQSEFYLEYQPVIDMHSGEVTSVEALVRWQDPDYGVISPQAFI 856

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN---ELCEGMQ 815
             IAEE  +I+ +  ++L++   D+  W  Q  M  + + IN++++  + +      + ++
Sbjct: 857  PIAEEAGLIEPLGEWILQQALSDLAQWHAQGLM--LKMAINVSARQCIHSRDISFFDILK 914

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              ++K   +   + +  +ES+++ +  +    L  ++++G+ + LDDFGT  S LSYL  
Sbjct: 915  QTLAKHDIAAENLHIEITESMLIEDKPQCLQTLESIKQLGVDIYLDDFGTGYSALSYLTQ 974

Query: 876  IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P   +K + S +           ++++I+ MA+++E  ++A+ +        L  +GCD
Sbjct: 975  CPISVIKIDKSFIDNALDNPSDAKLIKAIVMMAQSLEMPLVAEGVETVEQWHFLRNLGCD 1034

Query: 934  YIQDSHVASPLGFNSILKLLKERFP 958
            Y Q   ++ PL    +++ L+   P
Sbjct: 1035 YAQGYLMSKPLAKAELVEFLRHAKP 1059


>gi|196036282|ref|ZP_03103680.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|195991074|gb|EDX55044.1| sensory box/GGDEF family protein [Bacillus cereus W]
          Length = 909

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 182/870 (20%), Positives = 356/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+L+++      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392
              ++ I    +   I  IGL +  +  L    +       L+L  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-RI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS  EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDISPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|88798395|ref|ZP_01113980.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Reinekea sp. MED297]
 gi|88778835|gb|EAR10025.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Reinekea sp. MED297]
          Length = 723

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 147/570 (25%), Positives = 257/570 (45%), Gaps = 18/570 (3%)

Query: 401 FSDGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +D ER      L +   G+ +           + P     LG++   + G  R++   +
Sbjct: 149 LTDLERLEKRNQLLLKSIGEGILGLSTDGQVTFSNPVAQQTLGMSEQELEG--RSFSDIV 206

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVR-----AADNQFHWMIIRIRPMSNSNGDILR 511
           +  D +      +             +  R         Q   +  +  PM   + D+  
Sbjct: 207 YHGDAEQPLVTWEYLPARLACEQGQAYHERIGVFWDRAGQLLPVEYKATPMM-VDDDLAG 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +    DITE++++ E +   A  D LTG+ NR +F   L   L  SA  +     ++ I
Sbjct: 266 IVIAFQDITERRRTEEQLARLAQYDALTGLVNRNAFNGLLKKALSRSARHEQP-LALLFI 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND  G  +GD +L  +  R+ + ++  DI+ RL G+ F I+L S   +   A
Sbjct: 325 DLDQFKTINDNHGHEIGDSLLQEVAMRLTDCVRNGDIIGRLGGDEFVIMLESLQATKDAA 384

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             + ++  ++  P  +   +I + ASIG A +  S +T+ E+L+ A++AMY +K  G N 
Sbjct: 385 RVSQSVLDALEAPFTIRGHQIFIGASIGIAVYPDSALTARELLRCADIAMYRSKEEGRNR 444

Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F      S R  + ++ DL  A    E  +   P I +  E ++G E LI+W  P  
Sbjct: 445 YRFFTDEMQESVREALQLEIDLRRAYRQQEFDIYLQPKICMATESVIGAEILIRWPRPDG 504

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDN 808
             +    F+  AEE+ +I  I  ++       I SW+ Q  +P      INI+ + L   
Sbjct: 505 SFLPPDVFIPKAEEMGLIHDIGEWVFRETCDTIRSWQQQNRIPLDFTFAINISMRQLHTG 564

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L E + A++ +    P+ +++  +ES++M +P  +   L  L +  I +++DDFGT  S
Sbjct: 565 HLAEDIAAIVKEVGIDPNCLEVEVTESIMMQDPRVTIDALNALHQQKIKISIDDFGTGYS 624

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS+L  +P D +K + S +          AI+ +II +  N++  +IA+ I  E + + 
Sbjct: 625 SLSHLRQLPIDAIKIDKSFVQALESDGQADAIVNTIISLGHNLDMRVIAEGIETEANRQA 684

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           LT  GCD  Q    A P+     L  L   
Sbjct: 685 LTAAGCDVAQGYFYAKPMCREDFLDYLDRY 714


>gi|288940775|ref|YP_003443015.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288896147|gb|ADC61983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 1124

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 137/554 (24%), Positives = 248/554 (44%), Gaps = 14/554 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +      V         V     IA + G A   + G        I    R      ++
Sbjct: 413 ILASIDVGVLAVSADGVIVEANRRIAEMFGYAIRELIGLPLQ--ELIPPAFRRAHVLHVE 470

Query: 470 SFVGY----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            F+      RR   + E      D     + I +  +   +G  +  +    D+TE++ +
Sbjct: 471 RFLHGSAYDRRMSERSELSGYRKDGSIFPVEISLSKIQ-VDGRWV-MVATILDVTERRLA 528

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E ++ +A  D LTG+PNR    +RL   L  S         ++ ID+D +K +ND  G 
Sbjct: 529 EEELVWHAIHDPLTGLPNRTMIHERLERALRRSKQQGQ-SVALLFIDLDGFKLVNDSHGH 587

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD++L ++ +R+ + ++  D + RL G+ F ++     +   +A+ A  +   +  P+
Sbjct: 588 QAGDELLKTVAQRLVDHVRPGDTIGRLGGDEFVVLCDHVESPAAVANLADRLNDLLREPV 647

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L  R +  +ASIG A    +  ++ ++L+NA+ AMY AK +G +    F        R 
Sbjct: 648 TLSGRRLFASASIGLAIGHGTTHSADDLLRNADAAMYQAKEQGRDGWRFFSEEIHEQARR 707

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +     L  A+E  E  + + PI+    + I G E L++W  P  G +S + F+ IAE 
Sbjct: 708 RLDIINGLRQAIERDEFQVRFQPILCAQSQIIRGAELLLRWF-PSGGEVSPAHFIPIAEM 766

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I  ++  +       WRD+  +   ++ +N++++ L D  L E  + ++++T  
Sbjct: 767 SGSIVPIGKWVFRQACLAERQWRDRFGVEAPYVSVNVSARQLNDEALVEEFRRMLAETGA 826

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P RI L  +E+ +M +   +  +L +L  +G+ + +DDFGT  S L+ L  +P   +K 
Sbjct: 827 DPERILLELTETSLMSDVIFNLSVLNQLAGLGLRVAVDDFGTGYSSLAQLLRLPLSKLKI 886

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   + G        AI+ ++  MA+ +   +IA+ +        L  +GCDY+Q  H  
Sbjct: 887 DREFVDGLDKRHDSRAIVHAVCSMARAMNLKVIAEGVENASQFGYLRDLGCDYVQGFHFY 946

Query: 942 SPLGFNSILKLLKE 955
            PL     L LL E
Sbjct: 947 RPLPPEEFLALLHE 960


>gi|85707914|ref|ZP_01038980.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
 gi|85689448|gb|EAQ29451.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
          Length = 787

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 158/746 (21%), Positives = 313/746 (41%), Gaps = 28/746 (3%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           + +      +    F++++     G L +    + +        F       +R      
Sbjct: 46  LTFYRAWTNAALGVFVAQMYATSVGPLTVGFWLATLIAIQLYGAFRER--QHSRAGDGAV 103

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
              F       +     +  P V  S       +  L     ++   +  Y      +  
Sbjct: 104 RSPFGWHMVFTVACGFLWSVPFVFFSQMGTPQEASALLVVAALL-MALSVYFFVSSPLNI 162

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                +  IG  +      +  ++    +  +  I+        +  LAT      I   
Sbjct: 163 LAYTLLLSIGAGLPYAVSGEWTVLGAIALFEIATILGTFEVG--RSYLATRLAEDAIAEK 220

Query: 404 GERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            E  SL +        D +W+ D  R   + +P  A  L  +   + G     L  I   
Sbjct: 221 EEVVSLLLREFEENEADWLWEVDTRRRLRSVSPRFAFALNSSERDVEGKP--LLELIAGQ 278

Query: 460 DRD--NFRTILDSF---VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             +   F   L      +  +        +V     +  W  +   PM +  G    + G
Sbjct: 279 TWESGKFAASLHELADKLRNKENFSNLIVQVSIK-GEERWWELSGTPMRDDRGKFTGFRG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +D+TEQ++S E I   A  D LT +PNR    + L+  LD +      R  ++++D+D
Sbjct: 338 VGSDVTEQRESSEKIAYLARYDTLTSLPNRLMLTEALSDALDYANQ-WRTRCALLMVDLD 396

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG   GD +L  ++ R+  L+    ++ RL G+ F +++   ++   +   A
Sbjct: 397 RFKAVNDSLGHITGDKMLAQVSARLEGLMGDKAMVGRLGGDEFAVVIRDASDLDFMRQLA 456

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           I + +S++ P  +    + V AS+G A       T  E+++NA+LA+Y AK  GG     
Sbjct: 457 IRIIQSLSEPYQVDNHTLYVGASVGSAIGPRDGKTVEELMRNADLALYRAKDVGGGEHCR 516

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F     +   +R  ++  L  A+   E  L Y P++    E IV  EAL++W+  + G +
Sbjct: 517 FEPVLHASAEERRQLEASLRKALGLDEFVLHYQPVVDARSENIVSFEALVRWNSSEHGFV 576

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ +AE+  +I  I  ++L +   +  +W +      + + +N++ + LL+ +  +
Sbjct: 577 SPGKFIPLAEDTRLIVPIGKWVLRQACFEARNWPEH-----VKVNVNVSPEQLLEPDFHQ 631

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   ++ +   P R+++  +ES+ + +   +R  L +   +G S+ LDDFGT  S L Y
Sbjct: 632 EVVDALASSGLRPERLEIEVTESIFLRDASIARNALEQAMALGCSIALDDFGTGYSSLGY 691

Query: 873 LGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L  + F T+K + + + G+ +   + +AI+ +++ MAK++E T  A+ +      + +  
Sbjct: 692 LRKLRFSTIKVDRTFVQGAAQGANESLAIINAVVAMAKSLEMTTTAEGVEDAEQAELIRN 751

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           +GCD IQ  +   P+     L+L   
Sbjct: 752 LGCDKIQGFYFGRPMSREEALRLFAS 777


>gi|94263465|ref|ZP_01287278.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
 gi|93456195|gb|EAT06334.1| PAS:GGDEF:EAL:GAF [delta proteobacterium MLMS-1]
          Length = 931

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/589 (24%), Positives = 260/589 (44%), Gaps = 17/589 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I +  ++ +++              E  +  +    +     D     V+     A  +G
Sbjct: 336 IQLLASLAEYLAPLLAARLESRRADEMVARILETIDEGFIIIDREFKIVSANRAYAEQVG 395

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMI 496
              G + G     +   H  D+  + +  +  V +                A  +  ++ 
Sbjct: 396 YPLGEIIGRHCYKVS--HQIDQPCYLSGEECPVQHVFDTGTPCTVTHTHYNAAGEPLYVE 453

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +  P+  +  G + R I I  DIT++K     +   AF D LT +PNR+ FLDRL    
Sbjct: 454 NKAFPLERDDLGVVRRAIEIVTDITDKKNREMEVHSLAFYDPLTRLPNRRLFLDRLEQAF 513

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             SA        V+ +D+D +K +ND  G  +GD +L  + +R+ E ++  D ++R  G+
Sbjct: 514 SASARSGQ-HGAVLFLDLDHFKTLNDTRGHDIGDLLLTIVAKRLQEAVRGDDTVSRQGGD 572

Query: 616 RFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            F ++L + +     A       A  +R ++  PI+L  +E   +ASIG + +      +
Sbjct: 573 EFVVLLRNLSPDRHAAVSQAGRVAEKIRVALDQPIDLDGQEHRTSASIGISLFLGHDTPA 632

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728
            E+ K A+ AMY AKH G N    F             +  DL  A+E  +  L Y P I
Sbjct: 633 DELFKRADAAMYQAKHAGRNRARFFDPEMQAELEQASALVMDLRQAIEQGQFQLHYQPQI 692

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
              +  I+G EAL++W HP+ G +S ++F+ +AEE  +I  I  ++L+     + +W D 
Sbjct: 693 A-NNGRIIGAEALLRWRHPERGPVSPADFIPLAEESGLILPIGHWVLQEACSQLAAWDDI 751

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  + +N+++      E    ++ +++ T   P R+KL  +ES+VM     +   +
Sbjct: 752 PAAGNFKLAVNVSAHQFRQPEFIAEIRQILAATGADPKRLKLELTESMVMTELADTVNKM 811

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+ +GI  ++DDFGT  S L+ L  +P + +K + + +          AI+ +II M 
Sbjct: 812 QELQVLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMG 871

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + ++  +IA+ +  +  +  L R GCD  Q    + P+       LL  
Sbjct: 872 RTLDFQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 920


>gi|28868556|ref|NP_791175.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851794|gb|AAO54870.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 763

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%)

Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453
             ER  L    V+ + D +        D+     V   P    I G     + G     L
Sbjct: 169 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 228

Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 D       ++   + + R  ++ E      D    W+ + I P++N  G    +
Sbjct: 229 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 284

Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545
           + +  DITE+K                           +  E +   AF D LT + NR 
Sbjct: 285 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 344

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             ++ L             R TV+ +D+D +K +ND +G   GD +L  +  R+   ++ 
Sbjct: 345 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 403

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   
Sbjct: 404 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 463

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
                 ++L++A++AMY AK +G      F  S      D ++I+  L  A+EN +  + 
Sbjct: 464 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 523

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI     E +VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   D+ 
Sbjct: 524 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 583

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +WR       + + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+ 
Sbjct: 584 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPAAQLQIEVTESVFLYQPDA 643

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
              +L ++R +G+ + LDDFGT  S L Y+   P D VK + S ++     ++  AI+ S
Sbjct: 644 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 703

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ + + ++  I A+ +        L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 704 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 757


>gi|326387145|ref|ZP_08208755.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208326|gb|EGD59133.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 904

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 165/752 (21%), Positives = 318/752 (42%), Gaps = 39/752 (5%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL-------------SSSLIIFLFMYL 273
             L   S +  F+++        + +      +                S+L+     + 
Sbjct: 44  AFLFGTSHNGSFVAREWWQMVVPMGLGLVLLAVVNHAYDDTVSLGVGGLSALLTLPGRFA 103

Query: 274 H--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
                +  A    +T + +   A +    +         +   L ++ L     +    +
Sbjct: 104 ARATRQSQATAHRMTMAALTIAAPMLGYGWAIAHWAHHGSVPWLQAVSLLAAILLAATTI 163

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDN--DIIQPALVGGLVLIVILIGFTVIQH 389
           +    A LL  A + I++    +  AI   L     +    +         L+  + ++ 
Sbjct: 164 QSGRLAGLLA-AQVGIWVGVTCVVSAIAGILSAIMGVAIAIIAYARQKESDLVECSRLEE 222

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  +Q I +D E             W+ D   + +  +  +A +LG     + G  
Sbjct: 223 EARLQTRAQEILADFE------ETGQGWFWETDRRGNVLYISAPVAELLGRKVEDVTG-- 274

Query: 450 RNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           R ++    ++D+  N    L   +  R        R    + +  W  I  RP+ ++  +
Sbjct: 275 RRFIDLFDLDDQSGNGERTLTFHLSARSSFSDLVVRAATNE-EERWWSITGRPIYDTFDN 333

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              + G   D+TE++++ +     A  D+LTG+ NR      L  IL ++         V
Sbjct: 334 FQGFRGSGADLTERRRTQQHASRLAHFDSLTGLANRFFMSQSLEKIL-VAPQVQQRACAV 392

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            +ID+D++K++ND LG   GD +L  + +R+   +     + RL G+ F IIL       
Sbjct: 393 FLIDLDRFKQVNDTLGHPAGDQLLKQVAQRLERGVGAAGRVGRLGGDEFEIILAGRIERP 452

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  + +S++ P  L    + + ASIG A      +TS  +++NA+LA+Y AK  G
Sbjct: 453 MLAQIAAHIIESLSQPYTLDLGRVMIGASIGIAIAPDDGVTSEALIRNADLALYAAKDGG 512

Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 +         +R  +++DL  AV +  L L Y P+++   E+I G EAL++W+H
Sbjct: 513 RGRYHFYAHDLHSDAEERRRLEDDLRDAVTHGSLELYYQPVVQTTTEKITGFEALLRWNH 572

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G IS ++F+ IAE+  +I  I+ + L +   D+  W        + + +N+++    
Sbjct: 573 PVHGFISPAKFIPIAEDTGLIGPISEWALRQACNDLAQWPAS-----VRVAVNVSALQFA 627

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +  L   + + ++       R++L  +ESV + + E +  +   L+ IG+ L LDDFGT 
Sbjct: 628 NPGLPGVVTSALAHAGIEADRLELEITESVFINDSEGTDAMFRALKAIGVRLALDDFGTG 687

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
            S L YL   PFD +K + S + G+T+   +  AI+ SI+ +A+ +     A+ +    +
Sbjct: 688 YSSLGYLKKAPFDKIKIDQSFVRGATQPGSRNGAIIASIVSLAEALGMETTAEGVETHDE 747

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +  +GC ++Q      PL   +  K L+ 
Sbjct: 748 LDLVRLLGCSHVQGYIYERPLSSEAATKRLES 779


>gi|218906478|ref|YP_002454312.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|218534830|gb|ACK87228.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 909

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+L+++      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLA 392
              ++ I    +   I  IGL +  +  L    +       L+L  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNLELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|217969747|ref|YP_002354981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507074|gb|ACK54085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 1002

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 129/568 (22%), Positives = 244/568 (42%), Gaps = 16/568 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + +     + +LAV  S + +   D                G  +    G    
Sbjct: 436 QDITAQKEVELRLRQLALAVEQSPNTIVITDTDGRIEYVNEAFVRTTGYTAAEAIGQNPR 495

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L          +  +  +    R    + EF     D   +  +  I P+  ++G +  
Sbjct: 496 LLNA-GKTSAATYADLWATL--GRGEVWRGEFINTRKDGGTYTELATIAPIKQADGSVSH 552

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ I  DIT ++++   I   A+ D LTG+PNR    DRL   +  SA        +M++
Sbjct: 553 YVAIKEDITGRREAEARIRQLAYYDTLTGLPNRSLMWDRLRHAIAASARS-GASGMLMLL 611

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-- 629
           DID +K +ND  G  VGD +L  + +R+   L+  D +AR+  + F I++ +        
Sbjct: 612 DIDHFKLLNDTQGHEVGDALLREVAQRLRGALREEDTVARVGDDDFAIVVENLGADRDEA 671

Query: 630 ---IADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                  A  + + +  P  L        V AS+G   +      +  +LK AE+A+  A
Sbjct: 672 IGRAEKIAEHLHRCVTAPCELGLASGPYHVGASLGLTLFRGRNAAADAVLKQAEVAVARA 731

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N +  F  +          ++  L  A+  +   L Y P +   +  ++G EALI
Sbjct: 732 KDDGRNLIRFFSEAMQAVVAARAELELKLRAALACNGFRLYYQPQLD-RNGRVIGAEALI 790

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +    +   IS + F+ +AEE  +I  I  ++LE     + +W+   +   + + IN+++
Sbjct: 791 RCFDAEGEMISPAAFIPLAEETGLIVPIGEWVLETACAQLRAWQRTPSTAGLSLSINVSA 850

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     +    + A I +    P  +++  +ESVV+G+ E + L + +++ +G+   LDD
Sbjct: 851 RQFHQPDFVGKVAAAIERHRIRPGGLEIELTESVVIGDIETTVLRMRQIKALGVRFALDD 910

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +PFD +K +   +    +     AI+R+I+ ++++++  ++A+ +  
Sbjct: 911 FGTGYSSLSYLKRLPFDQLKIDQMFVRDMEKDTSSEAIVRAILALSRSLDLKVVAEGVET 970

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
               + L   GC+  Q      P+    
Sbjct: 971 AAQHELLLTRGCELFQGYLFGRPVPIED 998



 Score = 77.7 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 3/160 (1%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
             +I +     ++    A     + +          +    +    W      +T     
Sbjct: 297 ATIIALATLGLLLALQAALHRSRRQLARSKRSFDALIDSRREATCAWRPDTTLLTCNERY 356

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           A +LG  + S+ G    W+  +    R      +   +    G L  + R+R AD +  W
Sbjct: 357 AELLGTEAASLPGT--RWIDNVPEAKRAEVHAAIARMLQG-AGTLTTDRRLRQADGRTRW 413

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +     P+ +  G  +    I  DIT QK+    +   A 
Sbjct: 414 LRWLDLPVLDEEGRCVEVHSIGQDITAQKEVELRLRQLAL 453


>gi|256789507|ref|ZP_05527938.1| hypothetical protein SlivT_33928 [Streptomyces lividans TK24]
 gi|289773400|ref|ZP_06532778.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289703599|gb|EFD71028.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 714

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/625 (22%), Positives = 272/625 (43%), Gaps = 22/625 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-----VLATGYFSQG 399
             + ++  G       R  +  +Q A+  G    +        +      + A G  ++ 
Sbjct: 88  AYLVLYCGGDGDPEDLRARSARLQHAMAAGFAGALRARTLAEQEAIAQAALKAQGVVAEA 147

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   R      G+   +   D+  + +     +  + G+A  ++ G       + H +
Sbjct: 148 LHASEARFRAVFEGAAIGIGIADLDGNVLQVNEALMRMFGIADPTLGGRRAT--EWTHPD 205

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D      + +  V   R     E      D    W  + +  + +++G     + +  D 
Sbjct: 206 DAPQTWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLLRDADGTPQYQLALMEDT 265

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE++     +   A  D LTG+PNR  F +RL   L+        R  +  +D+D +K +
Sbjct: 266 TERRLLNLRLRYEATHDALTGLPNRSFFFERLEKALN---AGPGQRFGLCYLDLDGFKTV 322

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND LG A GD +LV +  R+        +++ARL G+ F  +    +   ++ + A  + 
Sbjct: 323 NDSLGHAAGDRLLVEVADRLQACATAPGEMVARLGGDEFVALTTGPDTRHEVDELAGRIM 382

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  P+++  RE+TV  SIG     + + + +E+L++A++ MY AK  GGN  E     
Sbjct: 383 NALLAPVSVDGRELTVRGSIGIVEGPAGERSPAEVLRSADITMYRAKSAGGNRFELADPE 442

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +         +   L  A+E  E ++ Y P++ L D  + G EAL++W HP+ G +    
Sbjct: 443 ADARVITRHGLTTALPAALERGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPDR 502

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLLDNELCE 812
           F+ +AE   +I  +  ++LE+  R    WR++        P+ I +N++   L    L +
Sbjct: 503 FIPLAEHTGLIVPLGRWVLEQSVRQARVWRERYGESGAAGPLRINVNLSPCQLTHPGLVQ 562

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
               ++ +T  +P  + L  +ES ++G  +     L RL ++G+ + LDDFGT  S L+ 
Sbjct: 563 DTVEILERTGVAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLAN 622

Query: 873 LGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  +P   +K + S              + I+  I+ +A +++  +  + +      ++L
Sbjct: 623 LRRLPVSVLKLDRSFTQSMQQFPADPVDLKIVEGIVALAHSLDLAVTVEGVETGAQAEQL 682

Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952
             +GCD  Q  + A P   + + +L
Sbjct: 683 RILGCDTAQGWYYARPGPPDRLHEL 707


>gi|16519842|ref|NP_443962.1| conserved putative diguanylate cyclase/phosphodiesterase with
           PAS/PAC domains [Sinorhizobium fredii NGR234]
 gi|2496701|sp|P55552|Y4LL_RHISN RecName: Full=Uncharacterized protein y4lL
 gi|2182511|gb|AAB91764.1| conserved putative diguanylate cyclase/phosphodiesterase with
           PAS/PAC domains [Sinorhizobium fredii NGR234]
          Length = 827

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/584 (24%), Positives = 267/584 (45%), Gaps = 21/584 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++ +       + +     R       +  ++W           +       G  + 
Sbjct: 246 YGTVEDIDDRRKMFEALKESEARFRAIADDAPVMIWVTGENGADDYHSRLWLETTGQTAE 305

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    WL  +H +DR+    +        R  ++ E+R++ A     W+I   +P  
Sbjct: 306 QAAGK--GWLNAVHPDDRNAVERVFYQAFD-LREPVRMEYRLKRAGGGSAWVIDIGQPRF 362

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            S+G  L ++GIA DITE++ + +        I   A  D LTG+PNRQ   +    + D
Sbjct: 363 ASDGTFLGFVGIALDITERRNAEQERLLAQKQIHHMARHDALTGLPNRQFLREEFERLSD 422

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A   + R  ++ +D+D +K IND  G A GD +L  +T R+   LK  DIL RLSG+ 
Sbjct: 423 HIA--PSTRLAILCLDLDGFKAINDAYGRATGDLLLRHVTERLRNFLKQSDILCRLSGDE 480

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++ +  N++ +    A  +   I  P  L    + +   +G A+ + S  +  E++K 
Sbjct: 481 FVVLRVGINSNAEARLLAQQLIDVIEAPYELAGTHVDLQVVVGLAAASKSDQSLDELIKT 540

Query: 677 AELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+  AK  GG  +  +          R  +K  L  A+   EL + Y P+  L   +
Sbjct: 541 ADIALERAKTGGGGTIVQYEPKMDADLRARQRMKVSLRHALAKGELEVRYQPLANLRTGQ 600

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I   EAL +W HP+ G +S +EF+ +AEE  +I  +  ++L +   + + W      P +
Sbjct: 601 ITTFEALARWPHPERGQVSPAEFIAVAEETGLIGPLGEWILRQACTEAVKWP-----PYV 655

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++     +  L   ++  +  T    SR++L  +ESV++   + +   L  +R++
Sbjct: 656 SVAVNLSPLQFRNQRLASTVRNSLEDTGLDASRLQLEITESVLLEECDSNLQTLKEIRQL 715

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ + +DDFGT  S LSYL   PFD +K + S +     +++ +AI+R++  + +++   
Sbjct: 716 GVIVAIDDFGTGYSSLSYLRTFPFDKIKVDRSFIADLPKSKESLAIVRAVAAIGRSLGII 775

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              + +  +  +  +   G D  Q      PL  +  + LLK R
Sbjct: 776 TTVEGVERQDQLDTIKAEGFDEAQGYLFGGPLPASQAMALLKSR 819



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 4/146 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +   V         + +  E           + W  D   + +   P      G A
Sbjct: 119 VIVAIALDVTECRTAEAALQASVEHHRSLTELHPQVPWTADPSGEVLEIGPRWEK-TGYA 177

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W   +H +D    +      +      L  EFR+ AA+  + W   R   
Sbjct: 178 PKEALG--AGWAKAMHPDDLGEVQREWAKSLAT-GEPLDVEFRLAAAEGGYSWYRSRAAT 234

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
               +G ILR+ G   DI +++K  E
Sbjct: 235 RRAEDGSILRWYGTVEDIDDRRKMFE 260


>gi|218886639|ref|YP_002435960.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757593|gb|ACL08492.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 739

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 132/579 (22%), Positives = 257/579 (44%), Gaps = 16/579 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++         Q +  +  +   A+  G  + V+   +  + +      + ++G A  
Sbjct: 147 RELRETNERLVEYQALLQEKNQFLEALVEGMPNPVFYKTLEGNYIGCNRAFSRLIGRAPE 206

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            + G   +    +                              +R A  +   +++    
Sbjct: 207 DIVGRSVH--EILPQEQACRVEDSGRRLTVQDDDGAGYSCMIDLRDAAGEDRVLVLYKSY 264

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             +  G     +G   D++E K+    I+  A  D LTG+PNR     R+          
Sbjct: 265 FRDRTGQRAGEVGTFLDVSELKRKEAQIVHQATHDELTGLPNRMGLRQRMED--HALKGG 322

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            + R  V+ +D+D +K +ND LG AVGD++L ++  R+  +    D++ARL G+ F ++L
Sbjct: 323 PDARLAVLYLDMDNFKTVNDSLGHAVGDELLRAVAGRLVGMAPRRDMVARLGGDEFVVLL 382

Query: 622 I--SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
              +E +       +  ++ S   P N  + E+ V  SIG +         + +LKNAE+
Sbjct: 383 PLSAEGDGELAETESARIQDSFTRPFNAADHELYVMPSIGISVAPEDGRDPATLLKNAEI 442

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK +GG     F  +        +  ++ +   +EN E  + Y P + ++  ++ G
Sbjct: 443 AMYRAKEQGGARFRRFTQAMNDDVTRRLAIEKSIRKGLENDEFVVFYQPRVDIVTGQVTG 502

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W  P    +   EF+ +AE+  ++ A+   +L         W D+    P+ I 
Sbjct: 503 MEALVRWARPDGTLVPPLEFIPVAEDTGLVVALGERVLRDACIQTRRWTDELG--PLRIA 560

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+++     +L + +QA ++++   PS+++L  +E+ +M +   S  +L RL   GIS
Sbjct: 561 VNISARQF-QPDLLDRVQAALAESGLPPSQLELEITETTMMRDLPTSVAILERLAAQGIS 619

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S L YL   P DT+K + S +      E    I+ +I+ M +N+   ++A
Sbjct: 620 IAIDDFGTGHSSLYYLKNFPIDTIKIDRSFVRDVPGDEGDATIVSTIVTMGRNLSLNVVA 679

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +  +  +  L   GC  +Q  + + PL  +     ++
Sbjct: 680 EGVETDDQLGFLRAHGCREVQGYYYSKPLPADGFADWMR 718


>gi|30265324|ref|NP_847701.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47530863|ref|YP_022212.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188137|ref|YP_031390.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|165870073|ref|ZP_02214730.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167636402|ref|ZP_02394702.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|167641711|ref|ZP_02399955.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170689351|ref|ZP_02880545.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708844|ref|ZP_02899279.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177654081|ref|ZP_02936091.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190567695|ref|ZP_03020607.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227818064|ref|YP_002818073.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|228930308|ref|ZP_04093313.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229600189|ref|YP_002869516.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254686276|ref|ZP_05150135.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724272|ref|ZP_05186056.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254735229|ref|ZP_05192938.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744433|ref|ZP_05202113.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|254755737|ref|ZP_05207770.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254759530|ref|ZP_05211555.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|30260002|gb|AAP29187.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47506011|gb|AAT34687.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182064|gb|AAT57440.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|164714396|gb|EDR19916.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167510336|gb|EDR85738.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|167528236|gb|EDR91018.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170126244|gb|EDS95136.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170666719|gb|EDT17488.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|172080964|gb|EDT66043.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190561111|gb|EDV15084.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005595|gb|ACP15338.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|228829351|gb|EEM74983.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229264597|gb|ACQ46234.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 909

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+L+++      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392
              ++ I    +   I  IGL +  +  L    +       L+L  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKRMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|228917910|ref|ZP_04081446.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228936585|ref|ZP_04099380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228823100|gb|EEM68937.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228841707|gb|EEM86818.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 909

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 181/870 (20%), Positives = 355/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+L+++      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392
              ++ I    +   I  IGL +  +  L    +       L+L  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAISRSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKRMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|301632470|ref|XP_002945308.1| PREDICTED: signaling protein ykoW-like [Xenopus (Silurana)
           tropicalis]
          Length = 834

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 137/570 (24%), Positives = 247/570 (43%), Gaps = 13/570 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  V       + +     R       + D  W+ D     V    +    LG++ 
Sbjct: 264 HVRTFTDVTDYVSIQEALRQSEARWRSLTQLTSDWYWEQDAEFRFVRFDGNPDRELGVSD 323

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            S++G  R  LP  H            + +        +E +   ++    W  I   P+
Sbjct: 324 ESLYGKRRWELP--HAGVTQAQWAAHRAQLEAHAVFKDFEMQRVRSNGTAQWASISGVPI 381

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G    Y G+A DITE+K++       AF D LTG+PNR+   DRL   + LS  D 
Sbjct: 382 FDEQGRFTGYRGVARDITERKRAEAETERLAFYDELTGLPNRRLLQDRLQQAMRLSVRDG 441

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ +D+D +K IND +G   GD +L     R+   ++  D +ARL G+ F ++L 
Sbjct: 442 K-HCALLFLDLDNFKTINDSMGHDWGDHLLRQAGMRLSGCVRASDTVARLGGDEFVLVLQ 500

Query: 623 SENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  +         A  +  ++  P  L    +  T SIG A +   K   SE+L++A
Sbjct: 501 GLDSVSERASAMAEVIAHKISLALGQPYQLGGCTLYSTPSIGIALFQGQKTAVSELLQHA 560

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY AK RG N +  F  S   +      ++ D+   ++  E  L Y  ++      +
Sbjct: 561 DLAMYQAKSRGRNTLCFFDASMQATANARSALETDMRAGLQRDEFLLHYQRVVDAQ-GAV 619

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EAL++W HP+ G ++  EF+ +AE+  +I  +   +L    + +  W   +      
Sbjct: 620 LGAEALLRWQHPQRGMVTPGEFISVAEQTGLIVPLGQLVLRLACQQLAHWAHHSACAHWT 679

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++++       + +   ++     P +++L  +ES+++ + E     +  LR  G
Sbjct: 680 LAVNVSAQEFRHPGFVQQVLDALAHAQADPHQLRLELTESLLLHDVEECIAKMQALRAKG 739

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913
           I   LDDFGT  S LSYL  +P D +K   S +    +     AI  ++I + +++   +
Sbjct: 740 IRFALDDFGTGYSSLSYLKRLPLDQLKIAQSFVRDVLTDPNDAAIACTVIGLGRSLGLDV 799

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +A+ +      + L   GC   Q      P
Sbjct: 800 VAEGVETTAQHQFLLHNGCPSFQGYLFGRP 829


>gi|229072815|ref|ZP_04206014.1| Sensory box protein [Bacillus cereus F65185]
 gi|228710306|gb|EEL62281.1| Sensory box protein [Bacillus cereus F65185]
          Length = 835

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 171/814 (21%), Positives = 344/814 (42%), Gaps = 36/814 (4%)

Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229
           LP + + +   +      F + + +++ V   +       Y +   +          ++ 
Sbjct: 28  LPSLSIHKQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMN 85

Query: 230 GYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
            Y ++ F               +LI    ++  +  ++I       + +   A +   T 
Sbjct: 86  IYFTLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTI 145

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYER 336
             +     LF ++F           I  ASI+L     I+Y   K            ++ 
Sbjct: 146 ILVYGYIHLFQLNFGMKTSPEFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDY 205

Query: 337 AVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
              ++P + +I  +             L   +   +   + Q  +      +++      
Sbjct: 206 VRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLT 265

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q        +  +    +R         D V+  ++      +     ++    +    
Sbjct: 266 TQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCE 323

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               + + +I   D +  +  L      R   L  E R +  +  ++++ I + P    N
Sbjct: 324 VASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-IN 380

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N   
Sbjct: 381 KEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DV 439

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +
Sbjct: 440 AVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYS 499

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK 
Sbjct: 500 EKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKA 559

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W
Sbjct: 560 NGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRW 619

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++   
Sbjct: 620 KHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQ 678

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFG
Sbjct: 679 FNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFG 738

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +    
Sbjct: 739 TGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETAE 798

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + + L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 799 EWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 832


>gi|294010897|ref|YP_003544357.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674227|dbj|BAI95745.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 895

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 165/718 (22%), Positives = 300/718 (41%), Gaps = 30/718 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
           G      A + + L   + I L     +              +  ++ L       P + 
Sbjct: 95  GNAGHAVALAAMLLVDGVAIVLPRGARFQLLRPHHQKWLMLPMVLLSGLSFSLMLGPALI 154

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           A      L + +      +   G +                     L  +I  R D   I
Sbjct: 155 AGEPSRNLVAEMAVALMAVSIFGDRRLLGVSYF----------CGLLIASILHRSDFAQI 204

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF-SDGERQSLAVLGSGDI-VWDWDIVR 425
              +     ++V  +         A  +  + +     +R       SG    W+ D   
Sbjct: 205 GLLISCIAAMLVAALRQAQADMNRAIAFHQRDLRAQRSDRLLREYEQSGRGWFWETDRHG 264

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEF 483
                +  +A  LGL + ++ G        I   DR +      L   +  R G  +   
Sbjct: 265 CIAYISDTLARTLGLGNEALIGRPIT--EIIRPGDRQDGDGERTLGFHLSARTGFAEIPV 322

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R   A ++  W  I  +P+ N  G    + G   D+TE ++S   +   A  D+LTG+ N
Sbjct: 323 RAAMAKDE-RWWSISGQPVFNEFGQFHGFRGSGTDLTEMRRSQAEVTRLAQYDSLTGLAN 381

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R   +  L   +           T+M++D+D++K +ND LG   GD +L  ++ RI  ++
Sbjct: 382 RVQMMRSLEQAVAGKKGQPR-DCTLMMLDLDRFKIVNDTLGHPAGDALLRQVSERIQRVV 440

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               ++ R  G+ F I+L    + + +   A A+   ++ P  +    + +  SIG +  
Sbjct: 441 GNKGLVGRQGGDEFKILLPGRPDKIMLDHLARAIITDVSQPYMVEGTAVVIGVSIGISFC 500

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721
               +T+ E+++NA+LA+Y AK  G      +         DR  ++EDL  A+  + L+
Sbjct: 501 PQDGVTADELIRNADLALYAAKGDGRGVYRFYSPEMHADAEDRRQLEEDLRRALVENALH 560

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           LVY P++    E+I G EAL++W HP  G IS + F+ IAEE  +I  I  ++L    RD
Sbjct: 561 LVYQPVVSSRTEQIAGYEALLRWQHPVRGAISPTLFIPIAEESGLIGPIGEWVLRTACRD 620

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W D      + + +N++     +  L   +   ++ +  +  R++L  +ESV + + 
Sbjct: 621 AAQWAD-----GVRVAVNVSPIQFANQGLPSIVMNALAASGLTAERLELEITESVFLNDD 675

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAI 898
           + + L+  RL+ IG+ L LDDFGT  S L YL   PFD +K + S + G+  K     AI
Sbjct: 676 DGTDLMFSRLKGIGVRLALDDFGTGYSSLGYLKKAPFDKIKIDQSFVRGAAIKGSPNSAI 735

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +++I+ +A+ +     A+    + ++  +  +GC +IQ      PL    +  L+++ 
Sbjct: 736 IKAIVSLAEALGMDTTAEGAETQDELALIRNLGCSHIQGYVYGRPLPAADV--LIQQH 791


>gi|229095277|ref|ZP_04226269.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|229114225|ref|ZP_04243646.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228669245|gb|EEL24666.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228688136|gb|EEL42022.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 569

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 261/566 (46%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E + +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQNLWKRILNGK--VWRGEIQNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----GKKEFGIIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L +E+   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNEHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCMTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YQEGLRLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565


>gi|89901961|ref|YP_524432.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346698|gb|ABD70901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 736

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 154/641 (24%), Positives = 268/641 (41%), Gaps = 53/641 (8%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVW 419
           R  +          +     L G   I   +     +Q  + S    Q+L +  +   + 
Sbjct: 104 RDGSSFWAHLTGKLVNPADPLAGSIWIVDDIDEQKAAQAQLQSVLTEQNLILDNAMVGIV 163

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
                R          T+LG   G + G   R W  Y+   D         +      G 
Sbjct: 164 FLR-NRIATRCNQRFETLLGYEPGELQGVSSRQW--YLTKQDWIEAEPRWKAPFAAGHG- 219

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT------------------ 520
            + E ++R  D       +R + ++ S+ +    I I  DIT                  
Sbjct: 220 FEGEIQLRKKDGTAIHCEVRAKAINASDPE-QGAIWITMDITARKTAENELLQARADLEK 278

Query: 521 ---------------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                                EQK +   I   A  D LTG+PNR    DR    L ++ 
Sbjct: 279 LVEVRTLELSRTVQELKNKAAEQKTAEAYIQRLAHFDALTGLPNRLLLNDRCQQALSVAQ 338

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   +M +D+D +K +ND LG  VGD+VLV L  R+   ++  D ++RL G+ F +
Sbjct: 339 R-GRQSVALMFLDLDHFKNVNDSLGHRVGDEVLVELAARLKAAVREQDTVSRLGGDEFIL 397

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L    +++  A  A  + ++   PI + + E+TVT SIG A +         + + A+ 
Sbjct: 398 LLPD-TDAMGAAHLAEKLLQTALQPILIEQHELTVTPSIGIALYPKDGTDLDTLSRCADA 456

Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N    +           +++   L  A+E  +L L Y P I LM  ++VG
Sbjct: 457 AMYRAKADGRNGYRFYTAQIQAHSDRMLLLDNALRRALERKQLELHYQPQIALMSGQVVG 516

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W HP+ G IS  EF+ IAE   +I  I  +++    R + +W  +  M PI + 
Sbjct: 517 AEALLRWTHPELGAISPVEFIPIAENNGLILPIGEWVMRTATRQLSTWIAR-GMAPITMA 575

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+++    +  L + +  ++      P  +++  +E V M +P  +  ++  L + G+ 
Sbjct: 576 VNLSALQFRNPNLPQLVTRILEDAALPPQLLEIELTEGVAMTHPLEAVAVMNELHQRGVR 635

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S LSYL       +K + S +          AI+ ++I MA ++    IA
Sbjct: 636 MAIDDFGTGYSSLSYLKKFQVYKLKIDQSFVRDITEDPDDKAIVGAVISMASSLGLQTIA 695

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +  E  ++ L   GC+  Q  + + PL   +    ++++
Sbjct: 696 EGVETEGQLEFLRARGCNEAQGFYFSRPLPTQAFEDFVRKQ 736



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 5/139 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +      Q + +  +G  +      R  V        I G +  +    + + 
Sbjct: 11  RRDALEELQLALREQQVILDTAGVGIVFI-KNRLVVRCNQRFGQIFGHSDAAAI--LGST 67

Query: 453 LPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            P ++ +D         ++    +G   + E  ++  D    W  +  + + N    +  
Sbjct: 68  SPSLYPDDLAAHALAEAAYPAMAQGLTFKSEVLMKRRDGSSFWAHLTGKLV-NPADPLAG 126

Query: 512 YIGIANDITEQKKSLEGIL 530
            I I +DI EQK +   + 
Sbjct: 127 SIWIVDDIDEQKAAQAQLQ 145


>gi|332307023|ref|YP_004434874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174352|gb|AEE23606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1503

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 136/569 (23%), Positives = 263/569 (46%), Gaps = 19/569 (3%)

Query: 400  IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    E+  L   ++    D V+  D     ++         G            +    
Sbjct: 942  LKVAEEQLKLFKRSIETISDGVFIADTSFRYISVNKAYCKYTGETRDQALASYLTFHQ-- 999

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +      F   +   +  + G    E   R  + + + M + I  +++ +G I  Y+G+ 
Sbjct: 1000 YP---GAFTEEVKKSLRQK-GNWNGEVESRRINGEKYEMELNIDAINDEDGRISHYVGVF 1055

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DIT +K + + +L  A  D LT +PNR  F          +      +  ++ +D+D +
Sbjct: 1056 SDITPRKSTEKELLKLANTDPLTDLPNRSFF-----QASHNNIVRRGTQHALICLDMDNF 1110

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            KKIND LG   GD ++  + RR+ +L        RL G+ F I+L  + +   +  F+ +
Sbjct: 1111 KKINDSLGHQTGDLLIKQIARRLQKLAGKSATCYRLGGDEFSILLDKDTDVHNVTHFSQS 1170

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            +   +A P  +  +E  + ASIG A +     +  E+LKNA+ AMY AK+ GGN  + F 
Sbjct: 1171 ILDDLARPFLINHQEFVLGASIGIAFFPEDGSSPQELLKNADTAMYFAKNAGGNKYQFFS 1230

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     ++ I+  +   ++     + Y P I +   +++ +EAL++++HP+ G +S 
Sbjct: 1231 GEMNQNAVRQLQIENLIRHGLKEDLFNVYYQPKIDIATGKLLSMEALVRFEHPEKGIVSP 1290

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            ++F+ +AE+   +  I   +L +   D   W          + +NI+++     +L E +
Sbjct: 1291 AQFIPLAEQTGQVIDIGEVVLRKACEDTKRWVKAGIFTG-RVAVNISARQFELPDLDEKI 1349

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              ++ K   SP  ++   +E  +M +P+ +  ++ RLR+ GI L LDDFGT  S L+YL 
Sbjct: 1350 ADILQKADLSPLHLECEITEGTLMQDPDNALRMMTRLRERGIHLALDDFGTGYSSLAYLK 1409

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P +T+K + + +     +     +  +II +A N+   ++A+ +  E  +  L R  C
Sbjct: 1410 RFPLNTLKIDKAFIDDIATSSVDRHMTAAIITIAHNLGLKVVAEGVEHEEQMSILRRYEC 1469

Query: 933  DYIQDSHVASPLGFNSILKLLKERFPLVK 961
            + +Q    + PL  +   +LLKE   L +
Sbjct: 1470 EMLQGYLYSKPLSSSRFERLLKENHQLNR 1498



 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 4/196 (2%)

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           + +    + +   +  W     + I       + + ALV   +L + +    V Q+  + 
Sbjct: 756 FGQYQFEVQSRYNLNPWSDSQSLTINIEPPLWLHRNALVLYCILALFIALSIVKQYR-SK 814

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                 I    ER  L +  SGD +WDWDI + +V  +     I+      +      + 
Sbjct: 815 RIARLAITESEERLKLTLWSSGDELWDWDIYQGQVFRSNTWG-IMDFPQDDIRVN-SAYQ 872

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512
             IH ND    +  L+  +  +    +  +R      ++ W++ R + +  +SN   +R 
Sbjct: 873 ANIHQNDIKRVQDALNEHLQDKTEHFEVTYRASTFKGEWLWVLDRGKVVSRDSNNQPIRM 932

Query: 513 IGIANDITEQKKSLEG 528
            G   +I+  K + E 
Sbjct: 933 TGTFKNISHLKVAEEQ 948


>gi|229199474|ref|ZP_04326136.1| Sensory box protein [Bacillus cereus m1293]
 gi|228584002|gb|EEK42158.1| Sensory box protein [Bacillus cereus m1293]
          Length = 735

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 269/566 (47%), Gaps = 11/566 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 174 EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 231

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L      R   L  E R +  +  ++++ I + P    N +++   G
Sbjct: 232 FIDSKDHDLLKKALQLTKEGRPQTL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 288

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    V+ +D+D
Sbjct: 289 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVIFLDLD 347

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 348 RFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 407

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       + ++KNA++AMY AK  G N    
Sbjct: 408 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTALMKNADMAMYRAKANGKNRFVF 467

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F      +      ++ +L  A++ +E +L Y P +    ++++G EALI+W HPK G +
Sbjct: 468 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVSTKTKQVIGFEALIRWKHPKLGIV 527

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L  
Sbjct: 528 SPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIP 586

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+Y
Sbjct: 587 TISKVLEETELQPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAY 646

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L   
Sbjct: 647 LTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQ 706

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD+IQ   ++ P+    + +LL ++
Sbjct: 707 NCDHIQGFFISKPVSSKDVWRLLHKK 732


>gi|225862602|ref|YP_002747980.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|225789508|gb|ACO29725.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 567

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSAAELKEKL 563


>gi|229015952|ref|ZP_04172914.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229022170|ref|ZP_04178721.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228739171|gb|EEL89616.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228745345|gb|EEL95385.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 569

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/569 (25%), Positives = 263/569 (46%), Gaps = 29/569 (5%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S  +   LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLQDLKLALDESS-IVAITDRNGRITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      + +   ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMLGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L   +  G+EAL++ +  + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTMKCTGIEALVRCNTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+  +  
Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--CQEGLKLSVNLSIQQLMQKQFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + PSR+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPSRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKKLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSIL-KLLKE 955
             MGCD++Q  + A PL    +  KLL +
Sbjct: 540 QLMGCDFVQGFYYAKPLDVGELKGKLLTD 568


>gi|328886877|emb|CCA60116.1| Sensory box or GGDEF family protein [Streptomyces venezuelae ATCC
           10712]
          Length = 721

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/580 (23%), Positives = 255/580 (43%), Gaps = 14/580 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  + A       + +   R      G+   +   D+  + +     +  + G   
Sbjct: 142 EAIARSALSARSAAEIALHATESRFRAVFDGAAIGIGIADLDGNVLEVNETLTRMFGGME 201

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G +     +   ++H  D  +   + D  V   R   + E      D    W  + +  +
Sbjct: 202 GPLRTRKVS--EWVHPEDGPHVWKLYDELVRGDREHYRVEKPYYRGDGTVLWTNLTVSLL 259

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +++G     + +  D TE++     +   A  D LTG+PNR  F +RL   L      +
Sbjct: 260 RDADGTPRYQLALMEDTTERRLLHLRLRYEATHDALTGLPNRTLFFERLEKALA---PGE 316

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621
           N R  +  +D+D +K IND LG + GD +LV +  R+   +    +++ARL G+ F  + 
Sbjct: 317 NARFGLCYLDLDGFKVINDSLGHSTGDRLLVEVADRLQSCVTGSGEMVARLGGDEFVALT 376

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   + + A  +  ++A P+ +  RE+TV  S+G     + + T +E+L++A++ M
Sbjct: 377 TGAAGEQDVTELADRILAALATPLRIDGRELTVRGSLGVVEGPAGERTPAEVLRSADITM 436

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  GGN  E     +         +   L  A+E  E ++ Y P++ L D  + G E
Sbjct: 437 YRAKSAGGNRFELADPEADARAITRHGLTTALPTALERGEFFIEYQPLVHLDDGSVHGAE 496

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILI 798
           AL++W HP+ G +    F+ +AE+  +I  +  ++L+   R    W+   ++  P+ I +
Sbjct: 497 ALVRWCHPQHGVLGPDRFIPLAEDTGLIVPLGRWVLQEAVRQARFWQTRHSDGGPLRINV 556

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L    L      ++ ++   P  + L  +ES ++G  E     L +L ++G+ +
Sbjct: 557 NLSPTQLHHPRLVADTVDVLERSGLEPGALCLEVTESALIGADEDLLKPLRQLAEMGVDI 616

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTI 913
            LDDFGT  S L+ L  +P   +K + S   G          + I+  I+ +A ++E  +
Sbjct: 617 ALDDFGTGYSNLANLRRLPVSVLKLDRSFTRGMQQHPVDPVDLKIVEGIVSLAHSLELAV 676

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             + +      ++L  +GCD  Q  + A P   + I  LL
Sbjct: 677 TVEGVETGAQARQLRDLGCDTAQGWYYARPGAPDRIHSLL 716


>gi|228955597|ref|ZP_04117597.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228804073|gb|EEM50692.1| Sensory box protein [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 835

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 171/814 (21%), Positives = 344/814 (42%), Gaps = 36/814 (4%)

Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229
           LP + + +   +      F + + +++ V   +       Y +   +          ++ 
Sbjct: 28  LPSLSIHKQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMN 85

Query: 230 GYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
            Y ++ F               +LI    ++  +  ++I       + +   A +   T 
Sbjct: 86  IYFTLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTI 145

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYER 336
             +     LF ++F           I  ASI+L     I+Y   K            ++ 
Sbjct: 146 ILVYGYIHLFQLNFGMKTSPEFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDY 205

Query: 337 AVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
              ++P + +I  +             L   +   +   + Q  +      +++      
Sbjct: 206 VRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLT 265

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q        +  +    +R         D V+  ++      +     ++    +    
Sbjct: 266 TQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCQ 323

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               + + +I   D +  +  L      R   L  E R +  +  ++++ I + P    N
Sbjct: 324 VASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-IN 380

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N   
Sbjct: 381 KEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DV 439

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +
Sbjct: 440 AVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYS 499

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK 
Sbjct: 500 EKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKA 559

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W
Sbjct: 560 NGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRW 619

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++   
Sbjct: 620 KHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQ 678

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFG
Sbjct: 679 FNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFG 738

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +    
Sbjct: 739 TGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETAE 798

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + + L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 799 EWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 832


>gi|291569908|dbj|BAI92180.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 612

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/538 (26%), Positives = 251/538 (46%), Gaps = 15/538 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEF 483
            V        + G       G     L      DR   +  +  L +      G    + 
Sbjct: 73  IVFVNKAFTRMTGYGPTEAIGQTPRILQG-EKTDRTILERMKLDLKA-----GGVFYGQT 126

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
                D +       I P+ N   +I  Y+ I  D+TE++     ++  A  D+LTG+ N
Sbjct: 127 INYRKDGREFVNEWHIEPIYNDRQEITHYLAIQRDVTERQNQQNRLIYEANHDSLTGLYN 186

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F   L   +D +    +    ++ +D+D++K IND  G   GD +L+ +  R+   +
Sbjct: 187 RGYFRTELQKAIDRTQDSQDYLFGLLFMDLDRFKLINDSFGHQAGDQLLIEIGDRLQSCI 246

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV--TASIGFA 661
           +  DIL+R  G+ F I++    +  +I+     ++++I  PI L E  +    + SIG A
Sbjct: 247 RPQDILSRWGGDEFAILIDDIQDLSEISQLTHKIQQTIKKPILLGEENLETVTSLSIGIA 306

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719
             +     S +ML++A+ A+Y AK RG      F   +      ++ ++ DL  A++  E
Sbjct: 307 LSSMGYNCSEDMLRDADTALYRAKERGKGSYAIFTQAMHHQVRQQLQLETDLRYALKRQE 366

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y PII +    IVG EAL++W+H   G +S ++F+ IAEE  +I  +  +++E+  
Sbjct: 367 LILNYQPIISMTTNRIVGCEALLRWEHKTLGWVSPAKFIPIAEETGLICPLGDWVIEQAC 426

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                W       P FI +N+A+K L    + E +Q ++  T  SP  IK   +E+ +  
Sbjct: 427 IQAKQWESIYQDLPPFISVNLATKQLTQPGIVEKIQEILEATKCSPELIKFELTETAIAE 486

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897
           + E +   L +++ +GI L +DDFGT  S LS L   P DT+K + S + G    E +  
Sbjct: 487 STEVAVTTLRKIKDLGIRLCIDDFGTGHSSLSRLSCFPIDTLKIDRSFIKGINASEHQTK 546

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I  +I+ +A+++    IA+ I       +L   GC+  Q   +A P+   +  ++L +
Sbjct: 547 IAYAIVKLAQSLGMETIAEGIENLEQFCQLKSWGCELAQGFLMAEPIASETFQEVLNQ 604


>gi|146280570|ref|YP_001170723.1| hypothetical protein PST_0174 [Pseudomonas stutzeri A1501]
 gi|145568775|gb|ABP77881.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 931

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 131/563 (23%), Positives = 264/563 (46%), Gaps = 12/563 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + S  E+Q LA      + + +   +     +        + G +   + G   +    
Sbjct: 374 ELRSQAEQQRLAATVFEAASEGMVIMNDHYRVLAVNDACCALSGYSREELIGH--SVARI 431

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               +       +   +    G  Q E        + +   +++R + ++N  +   +  
Sbjct: 432 AGSQESQRQYQTMREALE-LHGHWQGELIETRKSGEVYPQWVQLREVRDANDSVTHVVAF 490

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D++ ++K  E +      D+LTG+ NR    +RL         +      V+ ID+D+
Sbjct: 491 ISDLSVRRKIEERLRYLTHYDDLTGLANRGLLKERLHEACQRVRRNGR-NMAVLYIDLDR 549

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N+ LG    D +L  ++RRI + L   D +ARLSG+ F +++ +  +   +A    
Sbjct: 550 FKLLNESLGHEAADALLREMSRRITQTLSEADTIARLSGDEFVVLIDAYGSLSSLAHLGS 609

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + I  P+ + E+E+ ++ASIG +    +   +  +L+ A +AM  AKH GGN ++ F
Sbjct: 610 RLLQRIRKPVIIDEQELVISASIGVSLMPDNSRDAEVLLRQANMAMQQAKHLGGNTLQFF 669

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      + ++  L  A+++ +L + Y P + L ++ +   EAL++W HP+ G ++
Sbjct: 670 TDRPQASSMQYLQLENQLRKALDSGQLEVFYQPRLTLANDALDAAEALVRWRHPERGLVA 729

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ +AEE  +I  +  F+L    R    W+ Q     I I +N++ K L        
Sbjct: 730 PAHFIPLAEETGLIIPLGEFVLREACRQARQWQQQGLAE-IRISVNLSVKQLRQGNFVSL 788

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T    + ++L  +ES ++ + + +  +  +LR +G+ L +DDFGT  S LSYL
Sbjct: 789 VRQVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVRLAIDDFGTGFSSLSYL 848

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D VK + S ++    + +  AI R+II M  ++E  ++A+ +  +  +  L    
Sbjct: 849 KRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANQ 908

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD IQ   ++ P+      +LL+
Sbjct: 909 CDEIQGYLLSPPVPAEQFAELLR 931



 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   V +        ++ +     R +LA+  SG  +WDWD+  + V  +  +  + G+ 
Sbjct: 235 LEQRVAERTAELAQLAEELGESETRLNLALDASGLGLWDWDLQNNHVHHS-RLEVVFGIG 293

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               H    + LP IH  D +  R IL + +     +   E+R   AD    W+  R R 
Sbjct: 294 RQHRHDEDGSPLPDIHPKDLEGVRAILIAHLKGETEQFAVEYRALRADGSEIWLEDRGRV 353

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  ++ G  LR IG   DI+E +   E     A 
Sbjct: 354 IQRDAGGRALRMIGTRRDISELRSQAEQQRLAAT 387


>gi|118581894|ref|YP_903144.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pelobacter propionicus DSM 2379]
 gi|118504604|gb|ABL01087.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 729

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 156/627 (24%), Positives = 292/627 (46%), Gaps = 33/627 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
               +  I    ++T  L            +  +V  +  T+   + AT    Q +    
Sbjct: 119 AGTAVARIEASRSLTPLLLRTFAVALCSAIIAAVVFYMLRTLP--LRATSRAYQALDESE 176

Query: 405 ERQSLAVLGSGDIV----WDWDIVRD-----RVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +  L      + +     D+D   D      +   P  A + G    ++ G     L  
Sbjct: 177 SKYRLLYESMREGMALHHMDFDENGDFAAISVIDANPSCAAMFGCDPQTLIGSDSIALFG 236

Query: 456 IHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                 + FR  L   +    +   +Q+E  +   DN +      +   S  +G      
Sbjct: 237 ------ETFREYLSELLRLLEQGTSIQFELTLPRTDNLY-----SVHAFSPDHG---LVA 282

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DITE++KS + I   A+ D+LT +PNR  FLDRL   +  +  D+N    V+ +D+
Sbjct: 283 TLFEDITERRKSEQQIQHMAYFDSLTDLPNRVLFLDRLRQAIAHALRDEN-SLAVLFLDL 341

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG + GD +L+ +TRR+G  ++  D LARL G+ F +I+      +     
Sbjct: 342 DRFKDINDTLGHSAGDQLLIQVTRRLGRQIRSCDTLARLGGDEFVVIVTDLGKKMNATRV 401

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +I  P  +  RE+ VT SIG A +      +  ++K+A+LAMY +K  G N   
Sbjct: 402 AQDLINAIQPPFLIAGRELHVTTSIGIALFPDDGNNAETLVKHADLAMYSSKESGRNRYN 461

Query: 694 SFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S  +   + ++ +  L  A+E  E Y+ + PI+   D  +V  EAL++W+HP  G 
Sbjct: 462 FYSASMNQKALMRMETEAGLRNALERREFYVEFQPIMNAADSTVVAAEALVRWNHPTRGR 521

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   +F+ +AEE  ++  +  ++L  +   I +W D    P I   +N++S+ +   +  
Sbjct: 522 IPPDQFIDLAEETGLVVPLGEWVLRTVCSRIKTWSDAGL-PLIRFSVNVSSRQIERQDFA 580

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E ++  + ++  + +++++  +ES ++ + + +   L  L++ G+S  +DDFGT  S L 
Sbjct: 581 EIVRNALRESGANSAQLEIELTESCLIRHSDTNISDLFGLKEWGVSFAIDDFGTGYSSLG 640

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           Y+  +P D +K + S +   +      AI+ +II M++ +    IA+ +     ++ L  
Sbjct: 641 YIKTLPIDHIKIDRSFVRDISTDFHDQAIVEAIIAMSQRLGIRNIAEGVETIEQVRFLQE 700

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
            GC+ IQ  +   PL   ++ +LL+ +
Sbjct: 701 RGCEEIQGYYFHRPLSAEALEELLRAQ 727


>gi|90022687|ref|YP_528514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharophagus degradans 2-40]
 gi|89952287|gb|ABD82302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharophagus degradans 2-40]
          Length = 878

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 131/584 (22%), Positives = 271/584 (46%), Gaps = 11/584 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           VL        +++              + ER  +    +   +   +     +       
Sbjct: 284 VLKGKRHHILIMRDTTEIEIARAQHEDEVERFRILADLAPVGILQANSDWSGIYANDRWC 343

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            I G +   +      WL  IH +   N    L + +   +   + E      +++  W+
Sbjct: 344 EIAGRSMSDIL--ELGWLSAIHPDHFHNVIEPLRTAISEGKE-FKRECLFLKPNSEQTWV 400

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +  RP  ++NGDI  +I    D T + ++ + +   A  D LTG+ NR  F  RL   L
Sbjct: 401 ELHARPQISTNGDITGFIATILDSTFRHEAEDKLRELAEHDPLTGLANRAMFQHRLEHGL 460

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +    +    ++ +D+D +K +ND LG   GD++L+ + +R+ + ++  D +AR+ G+
Sbjct: 461 SRTHRHGS--LALLCLDLDGFKNVNDTLGHDSGDELLIEVAKRLTKCVREEDTVARVGGD 518

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEML 674
            F I+L    ++   A+ +  +  S+  P ++  +E+ ++ SIG    T   K  S  ++
Sbjct: 519 EFMILLEGLKDAQIAAEVSEKILNSLEPPCSINRQEVFISTSIGITFATKGDKNDSKSLM 578

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K A++A+Y AKH G N+ + +     R   +R+ +   L  A++ +E  + Y     L  
Sbjct: 579 KQADMALYRAKHEGRNNYQYYSPDLERASQERLYLGNSLHHALQRTEFQVFYQFKSSLST 638

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-M 791
            ++ G EA+++W+HP+ G +   +F+ I +E  +I  ++ ++          W+ +    
Sbjct: 639 HKVTGFEAVLRWEHPRRGQLQPDQFIPILDESGLIVPVSRWLTHTSFMQHAKWKAKGLIE 698

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               I +N++ + L D     G+   I  +   P+ + +  +E+ ++ + E++   L  L
Sbjct: 699 KDAKIAVNVSPRLLRDPYFIRGLANSIQDSKIDPTSVIIEITETALLEHSEQTTDALNGL 758

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           ++IG++++LDDFGT  S L++L   P D +K + S +          AI++++I +AK++
Sbjct: 759 KRIGVAISLDDFGTGFSSLTHLKRYPIDQIKIDRSFVQNLLKDSGDKAIVKAVIVLAKSL 818

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + T++A+ +  +  +  L  + CD  Q  ++  P     I  LL
Sbjct: 819 KLTVVAEGVEDKATLDYLASLNCDEYQGFYLNKPQPAEEIENLL 862


>gi|218438075|ref|YP_002376404.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218170803|gb|ACK69536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 812

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 172/804 (21%), Positives = 336/804 (41%), Gaps = 50/804 (6%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250
           Y   II     L +   + + +  ++ L+       +   Y  +  G LS +++   G  
Sbjct: 13  YSLAIICPLLALGVRYLLNWALGNNAPLLIFIIPVIITAWYGGLLPGILSTVISAYLGNY 72

Query: 251 LIWRAC-----------SEIALSSSLIIFLFMYLH--------WNRWHAKVGYITFSGIA 291
                              I +  S  IFL ++           ++    +         
Sbjct: 73  FFIHPTEQFKILSLPETVRIIIFLSEGIFLSIFFEYYKRLNTKTSQIVESLRESEERYRL 132

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI-W 350
            +  +     +       I    L +  +         G      ++          +  
Sbjct: 133 LVEGIEDYGIFMLDGQGRIISWNLGAERIQGYQSTEIIGRH---YSIFFTTTDTSAKVPE 189

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-- 408
            I        R   +  +    G L    I++     Q+    G+          +Q+  
Sbjct: 190 KILQTALKQGRFKGEGWRRRKDGSLFWASIVLSPVFAQNRQLKGFAKITRDISERKQAEV 249

Query: 409 -------------LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-P 454
                        LA+  S  IV   +              I G +   + G     +  
Sbjct: 250 QKNKLLKDLTDLKLALDQSA-IVAVTNSQGIITAVNDQFCQISGYSKEELIGKTHRIINS 308

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H      F   L + +   +   + E   R+   QF+W+   I P  N N    +Y  
Sbjct: 309 GYHS---KKFFQQLWATISQGK-IWRGEICNRSKTGQFYWVATTIVPFLNQNNQPFQYFA 364

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT++K + + +      D+LTG+PNR   + RL  +   +    N    ++ ID+D
Sbjct: 365 IRFDITQRKLAEKRLRHEVLHDSLTGLPNRTLLIQRLEQVRHRAKRKANYCFALLFIDLD 424

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  +GD VL+++  R+ E ++  D +ARL G+ F I+L       +I    
Sbjct: 425 RFKNINDNLGHPIGDRVLITIASRLQECVRSLDTVARLGGDEFIILLDELEEEKEIFKII 484

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + K +  P+ +  + +++TASIG A +  + +++S++L+NA+LAMY  K+ G      
Sbjct: 485 ERIEKQLTTPMVIEGQTLSLTASIGIA-FNDTNLSNSDLLRNADLAMYRVKNEGKAGYAI 543

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           ++            ++  L LA+E  E  L Y PI+ L    ++G EALI+W HP+ G I
Sbjct: 544 YQSEMYAQAQALWELENHLKLAIERQEFLLYYQPILSLKTLTVIGFEALIRWQHPQRGLI 603

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELC 811
           S   F+ +AEE  +I AI  ++L++  + + +WR++      + I +N++++ L  +   
Sbjct: 604 SPVHFIPVAEETDLIVAIGEWVLQQSCQQLSAWREKYPQANHLTINVNLSNRQLEKDNFV 663

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++ +T    +++KL  +E+++M N   +   L +L++  I++++DDFGT  S L+
Sbjct: 664 YKLDNVLQQTGLPATQLKLEITETLLMTNLAAAIATLSQLKQRNINISIDDFGTGYSSLN 723

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P  ++K + S +    E      I+++I+ + + +   +IA+ I  +  +++L  
Sbjct: 724 YLCRLPVSSLKIDRSFVANVHEDSKNLQIIQTILSLGEQLMIEVIAEGIETQKHLEQLQE 783

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
           +GC Y Q    + P+   +  +L+
Sbjct: 784 LGCQYGQGYLFSKPVNCEAAEQLI 807


>gi|260222170|emb|CBA31467.1| Uncharacterized signaling protein CC_0091 [Curvibacter putative
            symbiont of Hydra magnipapillata]
          Length = 1053

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 141/602 (23%), Positives = 264/602 (43%), Gaps = 18/602 (2%)

Query: 360  KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                +  +  A          ++      + L        +    E  +     S + + 
Sbjct: 452  GTTPSWAVLSARRLNFQGRDAVLTAFTPINKLKV------MEQRLELWAKVFEASSESII 505

Query: 420  DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
              D  R  ++         G       G   +++      D     T+          + 
Sbjct: 506  IMDEARKIISVNQAFCRSTGYDFYEALGQDLSFVMNT-PQD-----TVWADLEDQNDWQG 559

Query: 480  QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            +  F  +  D    W+++     S ++G+++ YIGI+ DIT++K   E I   A  D LT
Sbjct: 560  EVHFCKQNGDTYPAWLMVSSVHKSATSGEVVNYIGISIDITDRKAKEERIRFLAQHDVLT 619

Query: 540  GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
             +PNR     RL   +  +      +  V+ ID+D++K IND LG  +GD +L ++ RR+
Sbjct: 620  ELPNRALCQQRLGEAIASA-RHTGEKVAVLFIDLDRFKLINDTLGHHIGDGLLRTVARRL 678

Query: 600  GELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRKSIAMPINLLEREITVTASI 658
               ++  D ++RL G+ F IIL    +     A     +  +I     +    +TV+ S+
Sbjct: 679  SSAVRSDDTVSRLGGDEFVIILRHVTDLPELTAMVNDRLIPTIRQTATVDGHVLTVSCSV 738

Query: 659  GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVE 716
            G A +        E+++ A+ AMY AK  G +    F   + +    R  ++  L  A+ 
Sbjct: 739  GVALYPEDATDQDELMRRADAAMYEAKSAGRDTARFFSPETDQRVLARQSMETQLRQALA 798

Query: 717  NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            N E  L Y P +     ++ G EAL++W +P  G +   EF+ +AEE  +IK I  ++L 
Sbjct: 799  NEEFSLHYQPRLNARTRKVQGAEALLRWKNPLLGQVPPGEFIHVAEESGLIKPIGAWVLR 858

Query: 777  RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
               R+ +S  +Q     + + +N++   L D EL + + A++  T   P++++L  +ES 
Sbjct: 859  EACRNWMSMEEQGICKGLELSVNLSVAQLADPELVDQLSAVLRDTRMPPAQLELELTESH 918

Query: 837  VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            +M NP  ++  +  L+ +G+ + +DDFGT  S L+YL     D +K + S + G      
Sbjct: 919  LMDNPVAAQQQVAALKALGVKVAIDDFGTGYSSLAYLKRFDIDKLKVDQSFVLGMLEDSA 978

Query: 895  RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              AI+ ++I +   +   ++A+ +      + LT +GCD +Q    + P+     +  L+
Sbjct: 979  DAAIVHAVIALGHTLGLKVVAEGVENLPTAQTLTALGCDELQGYCFSRPIPLAEWVAYLR 1038

Query: 955  ER 956
              
Sbjct: 1039 SH 1040


>gi|228949021|ref|ZP_04111294.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810777|gb|EEM57125.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 909

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 182/870 (20%), Positives = 356/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ +
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHV 160

Query: 220 PTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM---YLH 274
            T +    +V L Y   D  FL   +NL    L +        L S+L+++      Y  
Sbjct: 161 FTTSYIDIFVQLTYPMADLLFLLIGINLLFRPLSLLPKKVGALLGSALLLYATTDAIYAF 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFTPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQILLTPKLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI-GFTVIQHVLA 392
              ++ I    +   I  IGL +  +  L    +       L+L  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLIITFSFVLIRHSLVRKQNKLLLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS  EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDISPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|144897382|emb|CAM74246.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 690

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 137/557 (24%), Positives = 260/557 (46%), Gaps = 11/557 (1%)

Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            ER  LA       G+ +   D         P  + + G A   + G    ++    IND
Sbjct: 136 EERLRLAATVYENVGEAIIVTDTDDVVHAINPAFSRMTGFAVDQVVGLKSKFIAD-EIND 194

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             N     D     R      E   R ++       + +  +   NG++  ++ +A+D+T
Sbjct: 195 PKNVSEAWD--FARRGETWHGELWGRRSNGDVFPASVALTGVQGENGEVGSFVMVASDVT 252

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +K   + I  +A  D LT + NR + ++ L   +  +  ++  R  ++ +D++ +K +N
Sbjct: 253 RRKMDEQRIRFHARHDALTKLANRHTVMEALGDAIVRA-ENEGNRLALLFLDVNHFKDVN 311

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD++L  + RR+   ++  DI+ RL G+ F + L S  ++         +  +
Sbjct: 312 DSFGHAAGDELLKQVARRLKGCVRASDIIGRLGGDEFVVALPSITDAQGALACVEKVLYA 371

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSS 699
            + P +L E+E+  + SIG A +      +  +L +A+ AMYHAK  G         +  
Sbjct: 372 FSEPFSLPEQELYASTSIGVALYPDHADCAETLLSHADAAMYHAKAGGNAYRFYDSDMDR 431

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++RV ++ DL  A+   +  L Y P I  +  ++V  EALI+W HP  GN+S + F+ 
Sbjct: 432 QAAERVNLENDLRHALAEGQFRLNYQPKIDGISRKVVAAEALIRWKHPTRGNVSPALFIP 491

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I AI  + L+   R +  W D        I +N++     D  L + ++  +S
Sbjct: 492 VAERAGLIGAIGDWALQEACRQMRLWLDDGIEFGC-ISVNLSPAQFHDASLKQKVERSLS 550

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SPS ++L  +E+++    +R+  ++G L ++G+ +++DDFGT  S L+YL   P +
Sbjct: 551 QWGLSPSLLELEITETMMATEVDRAIAIVGELGQMGVRMSIDDFGTGYSSLAYLKLFPVN 610

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +      R   AI+ SI  +A N+   +IA+ +  +     L   G   +Q 
Sbjct: 611 VLKIDRAFIKELPGNRKDGAIVSSIATLAANLGFEVIAEGVETQAQAGFLLTKGVTLMQG 670

Query: 938 SHVASPLGFNSILKLLK 954
              +  +  +   +L++
Sbjct: 671 FLFSPAVPPDEFAQLVR 687



 Score = 86.9 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLP--YIHINDRD 462
           +       + + ++        +     +A I G  +  ++   + +     Y+H  DRD
Sbjct: 17  QYRSLFENAVEGIYRTTPSGRYLNANQALARIYGYDSPKALIEGLTDIAHGLYVHPEDRD 76

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F+      + +      +E +V     +  W+    R + + +G+ + Y G   DITE+
Sbjct: 77  RFK----RLLDHESVVRNFEAQVYRKTGEIIWIAENARLVRDDDGNAVCYEGTVQDITER 132

Query: 523 KKSLEGILCNAF 534
           K + E +   A 
Sbjct: 133 KLTEERLRLAAT 144


>gi|299134124|ref|ZP_07027317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590871|gb|EFI51073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 958

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/607 (22%), Positives = 270/607 (44%), Gaps = 26/607 (4%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           A   RL N               +++ F+ I    A     + +     R   A+     
Sbjct: 351 ASEARLPNGRWLRVSRSMTQERGVIVVFSDIT---ALKMQEEQLHETNRRLDAALENMSQ 407

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            +  +D              I  +  GS+H G     +  + +   ++    +   +  R
Sbjct: 408 GLCLYDKDARLQVVNRRFCEIFNIPVGSVHAGMSFESVLMLSVMAGNHAGQNVSDLLAER 467

Query: 476 RGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +  L  E    +  + +D++   +  R      S+G    ++    D+TEQ+++   I  
Sbjct: 468 QRFLSREKIDSYYQQLSDDRVICVRHR----PASDG---GWLTTCEDVTEQRQAESKITF 520

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LT +PNR    +R+   +            ++ +D+D +K++ND LG AVGD++
Sbjct: 521 MARHDALTRLPNRVLLAERIEQAIAQVGRGSG--FAILCLDLDNFKQVNDTLGHAVGDEL 578

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L ++  R+G  ++  D +ARL G+ F II          A  A  + + +  P     + 
Sbjct: 579 LCAVADRLGSCVREIDTVARLGGDEFAIIQADTQRPEDAARLARRIVECLGEPYEFDGQR 638

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
           I +  S+G +       +  ++LKNA++A+Y AK  G      F          R  ++ 
Sbjct: 639 IVIGCSVGISLSPGDGTSGEKLLKNADVALYRAKAEGRGIWRFFETEMDESLQKRRALEL 698

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A++  +  L Y P+  +  +++ G EAL++W HP  G ++  +F+ +AEE+ +I  
Sbjct: 699 DLREAMDKKQFELFYQPLYDIDLDKVCGFEALLRWRHPVHGVVTPEQFISVAEEIGLIIP 758

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++++  R+   W D      + + +N++S       L E   + ++ +   P R++
Sbjct: 759 LGEWVIQQACREAALWPD-----DLKVAVNVSSVQFRSPRLLEAFSSALASSKLPPKRLE 813

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ESV++ N   +   L +LR +G+ + LDDFGT  S LSYL   PFD +K + S + 
Sbjct: 814 LEITESVLLTNNGETTETLHKLRALGLRIALDDFGTGYSSLSYLRSFPFDKLKIDQSFVR 873

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             T  E    I+R+I+ + K++     A+ +     +  +   GC+ +Q    + P+  +
Sbjct: 874 DLTDAEGSRVIIRAIVSLGKSLGMRTTAEGVQNIAQLNYIAAEGCNEVQGYFFSKPVAAS 933

Query: 948 SILKLLK 954
            +  +++
Sbjct: 934 EVPSVIR 940


>gi|52140259|ref|YP_086570.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51973728|gb|AAU15278.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 909

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 168/870 (19%), Positives = 348/870 (40%), Gaps = 34/870 (3%)

Query: 102 ERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTF 161
             ++   + +      F   L    +         +  R+   D   F   ++P     F
Sbjct: 52  SYILYFSNMKEGLPRLFWTILCVGTLSYFIGDIVVAYQRLILKDYYTF---VDPSD--FF 106

Query: 162 IMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIG--VASLLAIFLTIFYMVNRSSMLI 219
            +      L  I       Y+   N   L +  +I      + A F   +Y++   ++ I
Sbjct: 107 YL------LFLISFAFAFLYEIIYNRDLLEKLFMICDICIIVTAQFTLSYYLLIERTIHI 160

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM-----YLH 274
            + +   + +         L  L+ +      +     ++       + L+      Y +
Sbjct: 161 SSTSYIDIFVQLTYPMTDLLFFLIGINLLFKPLSLLSKKVGALLGSALLLYATTDAIYAY 220

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              +  +    T + +  + ++               +  +           +       
Sbjct: 221 IKYFIPEYSMFTVTPLYQVTLVLVAIACIIHTKEPEKQEQVLLTPRLGESIRLSLPYISV 280

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
              ++ I    +     +   M       + + +++      L+  +        Q  L 
Sbjct: 281 VMLIVFILVEYVFAPIVVIGLMITFSFVLIRHSLVRKQNKILLLAQMQFNSELEKQIELR 340

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           T    +    ++ + +          D ++  D+  + +       T+LG  +  +    
Sbjct: 341 TEDLVEQKNELYHNQQMFKSLYEHHPDPIFTLDLYGNFLKVNNAGTTLLGYQTNELLNQP 400

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   I+  D +                +  E R    +   +++ +   P+   +  I
Sbjct: 401 --YYSLIYEEDLEEIINTFHRVKKG--HSISLEIRAYHKNRDIYYLHVTAVPIFLKD-HI 455

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE K+  E I   A++D LT + NR++F   +   +  S         VM
Sbjct: 456 SGVYLMIKDITESKQQQEQINFLAYRDTLTELANRRAFHQYVEQAIARSKISKRP-FAVM 514

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K IND LG  VGD +L+++ +R+  +      LARL+G+ F I++ + N    
Sbjct: 515 FLDLDRFKIINDTLGHRVGDLLLIAVAKRLERMTTPNMKLARLAGDEFTILIENYNKRPD 574

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG 
Sbjct: 575 VKKMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRGK 634

Query: 690 NHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W HP
Sbjct: 635 NGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKHP 694

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+   
Sbjct: 695 LLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQQ 753

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           + L E +  +++     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  
Sbjct: 754 DHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGY 813

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K
Sbjct: 814 SSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLK 873

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L R  C Y+Q  + + PL     +K L++
Sbjct: 874 FLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 903


>gi|117165116|emb|CAJ88670.1| conserved hypothetical protein [Streptomyces ambofaciens ATCC
           23877]
          Length = 714

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/576 (23%), Positives = 260/576 (45%), Gaps = 19/576 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448
           + A G  ++ + +   R      G+   +   D+  + +     +  + G+A   + G  
Sbjct: 138 LKAQGVVAEALHASEARFRAVFEGAAIGIGIADLDGNVLQVNGALMRMFGIADPRLRGRN 197

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +R W    H +D      + D  V   R     E      D    W  + +  + +++G 
Sbjct: 198 VREWS---HPDDAPQTWRLYDELVRGEREAYHLEKAFYRPDGTVLWTNLTVSLLRDADGS 254

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + +  D TE++     +   A  D LTG+PNR  F +RL   L+        R  +
Sbjct: 255 PQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRSFFFERLEKALN---AGPGQRYGL 311

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627
             +D+D +K +ND LG A GD +LV +  R+        +++ARL G+ F  +    +  
Sbjct: 312 CYLDLDGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTP 371

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ + A  +  ++  PI++  RE+TV  SIG     + + + +E+L++A++ MY AK  
Sbjct: 372 REVDELAGRIMNALLAPISVDGRELTVRGSIGIVEGPAGERSPAEVLRSADITMYRAKSA 431

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN  E     +         +   L  A+E  E ++ Y P++ L D  + G EAL++W 
Sbjct: 432 GGNRYELADPEADARVITRHGLTTALPAALERGEFFIEYQPLVHLGDGSVHGAEALVRWL 491

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIA 801
           HP+ G +    F+ +AE   +I  +  ++LE+  R    WR++        P+ I +N++
Sbjct: 492 HPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEQSVRQARVWRERYGESTAAGPLRINVNLS 551

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L    L +    ++ +T  +P  + L  +ES ++G  +     L RL ++G+ + LD
Sbjct: 552 PCQLTHPGLVQDTVDILERTGVAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALD 611

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAK 916
           DFGT  S L+ L  +P   +K + S              + I+  I+ +A +++ T+  +
Sbjct: 612 DFGTGYSNLANLRRLPVSVLKLDRSFTQSMQRFPADPVDLKIVEGIVALAHSLDLTVTVE 671

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +      ++L  +GCD  Q  + A P     + +L
Sbjct: 672 GVETGAQAEQLRILGCDTAQGWYYARPGPPERLHEL 707


>gi|229082562|ref|ZP_04215025.1| Sensory box protein [Bacillus cereus Rock4-2]
 gi|228700994|gb|EEL53517.1| Sensory box protein [Bacillus cereus Rock4-2]
          Length = 835

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 173/814 (21%), Positives = 344/814 (42%), Gaps = 36/814 (4%)

Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229
           LP + + +   +      F + + +++ V   +       Y +   +          ++ 
Sbjct: 28  LPSLSIHKQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMN 85

Query: 230 GYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
            Y ++ F               +LI    ++  +  ++I       + +   A +   T 
Sbjct: 86  IYFTLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTI 145

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYER 336
             +     LF ++F           I  ASI+L     I+Y   K            ++ 
Sbjct: 146 ILVYGYIHLFQLNFGMKTSPEFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDY 205

Query: 337 AVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
              ++P +  I  +             L   +   +   + Q  +      +++      
Sbjct: 206 VRFILPYFSTIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLT 265

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q        +  +    +R         D V+  ++      +     ++    +    
Sbjct: 266 TQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCE 323

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               + + +I   D +  +  L      R   L  E R +  +  ++++ I + P    N
Sbjct: 324 VASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-IN 380

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N   
Sbjct: 381 KEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DV 439

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +
Sbjct: 440 AVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYS 499

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK 
Sbjct: 500 EKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKA 559

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W
Sbjct: 560 NGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRW 619

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++   
Sbjct: 620 KHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQ 678

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFG
Sbjct: 679 FNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFG 738

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E 
Sbjct: 739 TGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEE 798

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + K L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 799 EWKFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 832


>gi|118476310|ref|YP_893461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|118415535|gb|ABK83954.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
          Length = 569

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSAAELKEKL 565


>gi|323488713|ref|ZP_08093954.1| sensory box protein [Planococcus donghaensis MPA1U2]
 gi|323397592|gb|EGA90397.1| sensory box protein [Planococcus donghaensis MPA1U2]
          Length = 700

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/570 (24%), Positives = 262/570 (45%), Gaps = 12/570 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           + F  +  + A    +  +    ER       + D ++ +D+  +  +  P    I G  
Sbjct: 129 VLFGTVIDITAEVTANLKLKEKEERLDSLFTYNPDAIFTFDMEGNFQSANPGCEIISGYT 188

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  +     ++ P+I   D         + +         E  +   D +   +++   P
Sbjct: 189 TEEILQ--LSFTPFIVSEDLPKAFFHFHNALNGNASTY--EISMIRKDGETRTLLVTNFP 244

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           M  S G+I+   G+A DIT + +  + +    F D+LT +PNR  F D +   ++    +
Sbjct: 245 MK-SGGNIVGAYGMAKDITVETEYKKLMEGMGFFDSLTHLPNRTLFEDHVKQAIESKDRN 303

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +     V+ +++D++K IND  G   GD+ L  +  R+ E +     + R +G+ F ++L
Sbjct: 304 EK-DLAVLFLNLDRFKLINDSFGHQFGDEFLKDIAHRLSENIDANCTVGRFAGDEFAVLL 362

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                  ++   A      +A P   L   +++TASIG A  + +  +   ++K A+ AM
Sbjct: 363 QGL-EQYQVFQLAERFNDVLAKPFEALGHSVSITASIGIAFSSEANESVDRLIKKADSAM 421

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            + K         +        + R+ I+ +L  A+ N E+ L Y PII L +  +  +E
Sbjct: 422 NYTKKHKIAQYTVYSEELDQQSAYRLTIERELKSALTNQEMTLHYQPIIDLKNNRLSAME 481

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W+HP+ G I    F+ I+EE   I  +  ++L        +W+DQ   PPI I +N
Sbjct: 482 ALIRWNHPELGFIPPDFFIPISEETGQIVPLGRWVLYTACAQNKAWQDQ-GHPPIKICVN 540

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I++  L   +  E +  ++ +T  +   ++L  +ES+++ + +  +  L +L+K+G+S++
Sbjct: 541 ISTIQLQQLDFVETVIEILEETGLNAQWLELEVTESILLVDTKLLKSSLHQLKKLGVSMS 600

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  + LSYL    FD +K + S +   +      AI  +II +A  +  T++A+ 
Sbjct: 601 IDDFGTGFTSLSYLRQFSFDRIKIDRSFVGDISNDLNGKAITATIISLAHALNMTVVAEG 660

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I     +  L    CD  Q  +   PL   
Sbjct: 661 IEDSTQLTFLQGENCDEGQGYYFGRPLSAE 690



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                   ++G     +          IH  D    +  + +    +    +Y  R+  +
Sbjct: 49  YVNEHFCKLVGYEEKEILNGSITLEDLIHPEDFSVIQKRIFTEYDSKDAFARYRVRIYRS 108

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D Q   + I          ++L   G   DIT +  +   
Sbjct: 109 DGQLLHVEIHSTKKKWQGKNVLF--GTVIDITAEVTANLK 146


>gi|163750165|ref|ZP_02157407.1| sensory box protein [Shewanella benthica KT99]
 gi|161330021|gb|EDQ01005.1| sensory box protein [Shewanella benthica KT99]
          Length = 1432

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/563 (23%), Positives = 265/563 (47%), Gaps = 19/563 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        +         G   N+   ++ 
Sbjct: 879  HAEEQLRLFERAIANISEGMFILDSEFRFVEVNEACCELCLKPKDKFIGEQFNF--DLYP 936

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   ++   + + +  + GR   +      D     M + +  + +  G +  Y+G+ +D
Sbjct: 937  D---SYSEQIRTILNQQ-GRWSNDVESAKGDGSSFLMELTVDAIYDEQGQLTHYVGVFSD 992

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LT +PNR S +  L  ++       +   T+MV+D+D +KK
Sbjct: 993  ISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1047

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++L+ + RRI   + +   + RL G+ F I++    +    A  A ++ 
Sbjct: 1048 INDSLGHQVGDELLIKVARRIEAAVPYHTSIYRLGGDEFAILVDDNPDIGSSAVIANSVI 1107

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++   P  L   ++ V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1108 EAFVTPFELTSDKVVVGMSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1167

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R+    ++ +  +  A++     + Y P I L   ++ G+EAL++ +HP+ G I  +E
Sbjct: 1168 LNRNAIRQLEVENLIRQAIKEDLFEVYYQPKIDLKSGKMTGMEALVRLNHPEQGLIPPNE 1227

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   ++++       WR Q       + +N++S      +L + +++
Sbjct: 1228 FIPLAEENGLIVEIGDIVMKKACFAAQKWRSQGIFNG-RVAVNLSSYQFALPDLQQRIES 1286

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G++L LDDFGT  S LSYL   
Sbjct: 1287 ILRLTQLPAANLELEITEGTVIKEPEKAIKVMQQLSKMGVTLALDDFGTGYSSLSYLKRF 1346

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++++ +     +  L  + C+ 
Sbjct: 1347 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVSEGVEDASQLSILKALNCEE 1406

Query: 935  IQDSHVASPLGFNSILKLLKERF 957
            IQ    + P+      KLL + F
Sbjct: 1407 IQGFIFSKPVTEAEFTKLLHKEF 1429



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 66/169 (39%), Gaps = 3/169 (1%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              + + A     +L  ++I   +++ +L      + I    ER  L++ GSGD +WDWD
Sbjct: 719 PWWLSKQAEFIYFML-SLIISAVIVKTILRRREVQKQIAKSEERLKLSLWGSGDEMWDWD 777

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I   ++  +    + L                 IH  D+    T L+     +    +  
Sbjct: 778 IETGQIYRSNIWGS-LDFPRDGQRAGETGEKSNIHPMDQKRVSTALNDHFSGKSDHFEAA 836

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           +RV+     + W++ R + +  +   + LR  G   +I   K + E + 
Sbjct: 837 YRVKGKSGDWVWILDRAKIVERDEKDNPLRMTGTIKNINNFKHAEEQLR 885


>gi|229181597|ref|ZP_04308922.1| Sensory box protein [Bacillus cereus 172560W]
 gi|228601793|gb|EEK59289.1| Sensory box protein [Bacillus cereus 172560W]
          Length = 735

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 167/734 (22%), Positives = 322/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   +     LF ++F      
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSP 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 66  EFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDYVRFILPYFSIIITFSFIIIQ 125

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      +++       Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLTTQLEDEVEEGAFALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + L +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLLHFIDSKDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IQGEELSITPSIGIAMYPDYGTNVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + K L +  CD+IQ   ++ 
Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWKFLHKQNCDHIQGFFISK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|21219447|ref|NP_625226.1| hypothetical protein SCO0928 [Streptomyces coelicolor A3(2)]
 gi|6580642|emb|CAB63177.1| conserved hypothetical protein SCM10.16c [Streptomyces coelicolor
           A3(2)]
          Length = 714

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/625 (22%), Positives = 272/625 (43%), Gaps = 22/625 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-----VLATGYFSQG 399
             + ++  G       R  +  +Q A+  G    +        +      + A G  ++ 
Sbjct: 88  AYLVLYCGGDGDPEDLRARSARLQHAMAAGFAGALRARTLAEQEAIAQAALKAQGVVAEA 147

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   R      G+   +   D+  + +     +  + G+A  ++ G       + H +
Sbjct: 148 LHASEARFRAVFEGAAIGIGIADLDGNVLQVNEALMRMFGIADPTLGGRRAT--EWTHPD 205

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D      + +  V   R     E      D    W  + +  + +++G     + +  D 
Sbjct: 206 DAPQTWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLLRDADGTPQYQLALMEDT 265

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE++     +   A  D LTG+PNR  F +RL   L+        R  +  +D+D +K +
Sbjct: 266 TERRLLNLRLRYEATHDALTGLPNRSFFFERLEKALN---AGPGQRFGLCYLDLDGFKTV 322

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND LG A GD +LV +  R+        +++ARL G+ F  +    +   ++ + A  + 
Sbjct: 323 NDSLGHAAGDRLLVEVADRLQACATAPGEMVARLGGDEFVALTTGPDTRREVDELAGRIM 382

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  P+++  RE+TV  SIG     + + + +E+L++A++ MY AK  GGN  E     
Sbjct: 383 NALLAPVSVDGRELTVRGSIGIVEGPAGERSPAEVLRSADITMYRAKSAGGNRFELADPE 442

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +         +   L  A+E  E ++ Y P++ L D  + G EAL++W HP+ G +    
Sbjct: 443 ADARVITRHGLTTALPAALERGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPDR 502

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLLDNELCE 812
           F+ +AE   +I  +  ++LE+  R    WR++        P+ I +N++   L    L +
Sbjct: 503 FIPLAEHTGLIVPLGRWVLEQSVRQARVWRERYGESGAAGPLRINVNLSPCQLTHPGLVQ 562

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
               ++ +T  +P  + L  +ES ++G  +     L RL ++G+ + LDDFGT  S L+ 
Sbjct: 563 DTVEILERTGVAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLAN 622

Query: 873 LGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  +P   +K + S              + I+  I+ +A +++  +  + +      ++L
Sbjct: 623 LRRLPVSVLKLDRSFTQSMQQFPADPVDLKIVEGIVALAHSLDLAVTVEGVETGAQAEQL 682

Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952
             +GCD  Q  + A P   + + +L
Sbjct: 683 RILGCDTAQGWYYARPGPPDRLHEL 707


>gi|154248534|ref|YP_001419492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
 gi|154162619|gb|ABS69835.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
          Length = 758

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 132/558 (23%), Positives = 230/558 (41%), Gaps = 17/558 (3%)

Query: 402 SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIH 457
                  LA      + D +   D+        P  + I G     + G   R      H
Sbjct: 192 QSERHLRLAAAVFASAHDGLVVTDLNAVVSAVNPAFSQITGYCEAEILGRSMRTMHSGRH 251

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR+ +R +  +      G    E   R  + +     + IR + +  G    Y+G   
Sbjct: 252 --DREFYRGMWGALTS--TGSWHGEIWNRRKNGEIFLQQLSIRTVFDEKGKPQNYVGAFQ 307

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K S   +   A  D LT +PNR      L   +  +         V+ +DID++K
Sbjct: 308 DITRIKHSEFELDRIAHYDPLTDLPNRTLLASLLDLAVSRA----GKTCAVLFLDIDRFK 363

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG   GD VL +   RI   L     L     + F +IL         A  A  +
Sbjct: 364 TVNDSLGHIAGDAVLKAAADRIRAALDADATLGHYGADEFVVILEEIEGPQDAALAASRL 423

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +A P  +   EI + AS+G +        ++++L++A  A+  AK +G      +  
Sbjct: 424 IDELARPFTINGGEIYLGASVGISLHPLDADDAAQLLQHANTALAEAKAQGRGIYSFYTQ 483

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +     R+ ++ DL   +   E  L + P++ L +  I G EAL++W  P  G +  +
Sbjct: 484 ALTRSARVRMEMEADLRRGLVREEFRLNFQPVVDLANGRIAGAEALVRWQSPVHGLVLPN 543

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I+ +  ++LE   + +  W         FI +N++ +      LCE ++
Sbjct: 544 RFIPLAEETGLIEPLGDWVLEEACQQMAKWTAAGADLD-FIAVNLSPRQFQRGTLCERIE 602

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T    +R+++  +E+V+ G    +   L  +R  G+ + LDDFGT  S L+YL  
Sbjct: 603 EVLRRTGLPAARLEVEITENVLFGAVA-AERKLRDMRDSGVRIALDDFGTGYSSLAYLKR 661

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P   +K + S +          I  +II +A+ +   ++A+ I        L   GC +
Sbjct: 662 FPISKLKIDRSFVHDLPRAADAEIATAIISIARALGLDVVAEGIEAPEQCAFLKERGCGF 721

Query: 935 IQDSHVASPLGFNSILKL 952
            Q      P+     L+L
Sbjct: 722 GQGYLFGRPVTSERFLRL 739



 Score = 97.3 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 9/157 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A+   S  +    ER  LA  GS   V+D  +    +  +P    ILG+A  +     R 
Sbjct: 62  ASSGDSMALRESEERFDLAARGSDQGVFDIHV-GRSLYLSPRARDILGIAPKAPVDIRRT 120

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   +   DR     +    V      +  + R+   D     +  R     + +G + R
Sbjct: 121 FRQMLRGADRRKVAAVRKDLVRGGSD-VDLDIRISRPDGASRDVRWRGLATRDGDGAVTR 179

Query: 512 YIGIANDITEQKKSLEGILCNA-----FQDNL--TGI 541
            +G+  D+T QK+S   +   A       D L  T +
Sbjct: 180 VVGMITDVTAQKQSERHLRLAAAVFASAHDGLVVTDL 216


>gi|300864370|ref|ZP_07109242.1| PAS fold family [Oscillatoria sp. PCC 6506]
 gi|300337596|emb|CBN54388.1| PAS fold family [Oscillatoria sp. PCC 6506]
          Length = 948

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 159/656 (24%), Positives = 287/656 (43%), Gaps = 89/656 (13%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGS 444
           V + V       + +    E+       + + ++        ++  P +A I G   +  
Sbjct: 292 VARDVTKYKRTEEALRQAEEKYRSIFENAVEGIFQTLPNGRYISANPALARIYGYNDAAE 351

Query: 445 MHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +   +       +  N R  F   +  +    +    +E +V  +D Q  W+    R + 
Sbjct: 352 LIDKLTANAQLYVDPNRRAEFTGQMQLYDRVSK----FESQVYRSDGQPIWVSESARAVR 407

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             NG++L Y GI  DITE+K+  + +L NAF D LTG+PNR  F++R++  + L+    +
Sbjct: 408 GKNGELLYYEGIVEDITERKRVEDELLHNAFHDALTGLPNRLMFMERVSLAIKLAKKQSD 467

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---------------- 607
            R  V+ +D+D++K IND LG  VGD +L++  +R+  ++                    
Sbjct: 468 YRFAVLFLDLDRFKVINDSLGHMVGDQLLIAFAQRLQGVVWESQQLENDEQVVAIDASSA 527

Query: 608 ------------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
                        +ARL G+ F I++    +     + A  + K +++P NL   EI  T
Sbjct: 528 SSASSAIAGVSFTIARLGGDEFTILVEGIQDVSGATEIADRIHKQLSLPFNLNGLEIFTT 587

Query: 656 ASIGFASWTSSKI---------------------------------------------TS 670
            SIG                                                      ++
Sbjct: 588 TSIGIVLNWDLGDVKGGAQTLQLWTGGGTQSLQCKTEQHCEDVCNFSPIRHSQFPIRHSA 647

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728
            ++L++A++AMY AK RG      F  + +     R+ ++ DL  A+   E  + Y PI+
Sbjct: 648 EDLLRDADIAMYQAKARGKARSAVFDQAMYAGAVARLQLETDLRRAISAQEFQVYYQPIV 707

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L +  I G EAL++W HP  G +S S F+ +AEE  +I  +  ++L    R + +W+ Q
Sbjct: 708 CLANGRISGFEALVRWQHPHRGLVSPSSFIPLAEETGLIIPLGSWVLWEATRQMRAWQLQ 767

Query: 789 A-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
             + PPI I +N++ +     +L +  + ++ +T    S +KL  +ESV+      +R +
Sbjct: 768 FQSNPPIAISVNLSGQQFSQPDLIDKFKQILQETGLEGSSLKLEITESVITEGAGNARTI 827

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-------ILR 900
           L RLR + I L +DDFGT  S LS L + P +T+K + S ++   +   A       I++
Sbjct: 828 LKRLRDLNIQLCIDDFGTGYSSLSRLHHFPINTLKIDRSFVSRMGKTGRARSSGLGEIVQ 887

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +I+ +A N+    IA+ +     + +L    C+Y Q    + PL   +   +L  +
Sbjct: 888 TIVMLAHNLGMDAIAEGVETAEQLAQLKLYNCEYGQGYFFSKPLTSIAATAMLAAQ 943



 Score = 39.9 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 57/463 (12%), Positives = 127/463 (27%), Gaps = 82/463 (17%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ----GIFSDGERQSLAVLGSGDIV 418
            +        G L ++  ++ F ++Q    +    +     +    E+    +      +
Sbjct: 26  PSSRWLRLGGGSLAVLAGILVFVLVQAPARSREAVERATVALLLANEQLQAILEAVP-GM 84

Query: 419 WDWDIVRDRVT--TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W I  D         +AT   L+     G    +L        + F  ++  F     
Sbjct: 85  VSW-ISSDLHYLGVNRHLATACKLSPEDFQGKEIGFLNG-----NNEFTELVRQFFTRSD 138

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL------ 530
                E R+ A      ++   I             +GI  DITE+K + E +       
Sbjct: 139 REAVSEVRLEANGITRIYL---IVAQKYDRDRAAFTVGI--DITERKMAEEQLRASEAEL 193

Query: 531 ---CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDKYKKINDVLGI 585
                A  D +T         DRL   L +++T+ +   +P   ++     + +++VL  
Sbjct: 194 KALFAAMTDIIT-------VRDRLGRCLKIASTNPSLLYQPASELLG----QTLHEVLDR 242

Query: 586 AVGDDVLVSLTRRIG---------------ELLKFPDILARLSGNRFGIILISENNSLKI 630
              D  L  +   +                  + F   ++ +  +   ++        + 
Sbjct: 243 ETADTFLAYIHHALEIQQTVQFEYSLPIDNADMWFAVTVSPILNDSVLLVARDVTKYKRT 302

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFAS-----------WTSSKITSSEMLKNAEL 679
            +      +            I  T   G              +  +     ++  NA+L
Sbjct: 303 EEALRQAEEKYRSIFENAVEGIFQTLPNGRYISANPALARIYGYNDAAELIDKLTANAQL 362

Query: 680 A------------MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
                        M           + +R              +    +N EL      +
Sbjct: 363 YVDPNRRAEFTGQMQLYDRVSKFESQVYRSDGQPIWVSESARAVR--GKNGELLYYEGIV 420

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             + + + V  E L    H     + +    +  E + +   +
Sbjct: 421 EDITERKRVEDELLHNAFHDALTGLPNRLMFM--ERVSLAIKL 461


>gi|126660962|ref|ZP_01732050.1| hypothetical protein CY0110_06504 [Cyanothece sp. CCY0110]
 gi|126617740|gb|EAZ88521.1| hypothetical protein CY0110_06504 [Cyanothece sp. CCY0110]
          Length = 721

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 145/585 (24%), Positives = 283/585 (48%), Gaps = 9/585 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L    +     Q ++        +    +R    +  + DI+            +P +  
Sbjct: 135 LEEFTLRRQQQQALIERQKVEIALRESEQRFRALIENAIDIILIVSSEGTFTYLSPSVKR 194

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWM 495
           +LG    S+ G   ++   IH  D+   R   +S  +   +  +  EFRV + DN++  +
Sbjct: 195 VLGYDPASLIG--CSFFDLIHQADQQRIRQSFESIKIEANQSTILSEFRVCSHDNRWLML 252

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + + + +  +  ++   +DITE+  + + +  +A+ D LTG+ NR + L++L   +
Sbjct: 253 EAIAKNLED-DPAVAGFVINCHDITERHYTAQQLRYDAYHDKLTGLANRSALLEQLQKAI 311

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           D +         ++ +D+D++K IND LG  +GD++L ++ +R+ +  +  D LAR  G+
Sbjct: 312 DRNKRRRQDHFAILFLDLDRFKVINDSLGHLMGDELLKNMAQRLEQCHRDGDTLARFGGD 371

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F  +L       +    A  + + +  P  L  RE+ ++ASIG    T       +ML+
Sbjct: 372 EFVFLLQDIREPEEAVIVAQRIHEVLKAPFTLNNREVFISASIGITISTDHYDHPEQMLR 431

Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A+ AMY AK  G    E F  + +      + ++ DL  A++  EL + Y PI+ L  +
Sbjct: 432 DADAAMYRAKANGKACHEIFAPTMYLSALKELHLESDLRQAIQRQELVVYYQPIVFLKTQ 491

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMP 792
           +I+G EAL++W  P    I  ++F+ +AEE  +I  ++ ++L+   + +  W+     + 
Sbjct: 492 QIIGAEALVRWQPPGKSLIPPNDFIPLAEETGLIINLDRWVLQCACQQLYEWQQDFQGLA 551

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P FI +N++ K   D  L + +  ++ KT      +KL  +E+V + N      LL +L+
Sbjct: 552 PHFISVNLSPKQFFDPRLKDIIIEIVGKTGLDKKYLKLEITETVFLKNSHTVLNLLYQLQ 611

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++ I + LDDFGT  S LSYL   P +++K +   +    +     AI+R +  +A+ ++
Sbjct: 612 QLNIQICLDDFGTGYSSLSYLHRFPLNSLKIDRGFINDLGQTNQNDAIVRIVGTLAQELQ 671

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ I     I+ LT +G  + Q  + + P+   +   LL++
Sbjct: 672 LELIAEGIEESYQIEALTTLGYQWGQGYYFSPPIDAQAFSLLLEK 716


>gi|330830935|ref|YP_004393887.1| GGDEF/EAL domain-containing protein [Aeromonas veronii B565]
 gi|328806071|gb|AEB51270.1| GGDEF/EAL domain protein [Aeromonas veronii B565]
          Length = 814

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 130/576 (22%), Positives = 259/576 (44%), Gaps = 13/576 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            V+   + +       ER   A      + + +   D     ++  P    +    +  +
Sbjct: 243 RVMGVIHNATARRRQEERLHQANVVFDTTAEGIIILDSEHHILSVNPAFTMLTQYNAEEV 302

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   +    +H     +        +         E      D  +     +I  + ++
Sbjct: 303 IGRTPDI--IMHPRRYTDLDYPWY-HLRPGNNAWHGEMVCLRKDGSYFSSWQQISAVYDN 359

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +   Y+   +DI+  +K    +   A+ D LT + NR    +RL   L  +  +   R
Sbjct: 360 FNNTTHYVIALSDISAIRKVEAELNHLAYHDPLTELGNRHLLQERLALELKTAQLNRK-R 418

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ ID+D +K IND LG  VGD++L  L  RI   L+  D+  RL G+ F +++    
Sbjct: 419 LGLLFIDLDGFKLINDSLGHGVGDELLKRLAERIRGCLQHNDLATRLGGDEFLVLIPYLE 478

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++A  A  +   +  P+ L    + ++ASIG A +     +   ++  A+ AMY AK
Sbjct: 479 EPDELATLANTLLTVLREPVELAHELVAISASIGIAIYPDHADSPETLVSAADSAMYEAK 538

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +G N  + +   +++   +R+ I++ L  A+E  +L + Y P+  L +  + GLEAL++
Sbjct: 539 SQGRNGFQFYTPCMAARARERMQIEQGLLKALELEQLCIFYQPMTNLANGHLSGLEALLR 598

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G I+ + F+ +AEE  +I+ I  +++        +W       P  + +N++ +
Sbjct: 599 WQHPNEGMIAPTRFIPVAEECGLIEKIGEWVMRNACEQGQNWLAAGLPVP-RLSVNVSVR 657

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           ++      E + A++++T + P R+++  +ES ++   E+S  L  RL+ +G+ + +DDF
Sbjct: 658 EMRSPGYVERVAAILAETGFPPERLEIEVTES-IIQRVEQSLDLFTRLKNLGVQIAIDDF 716

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LS L  +P D +K + + +      +    + R+II +A +++  + A+ I  +
Sbjct: 717 GTGFSSLSLLKTLPIDRIKIDRAFVQALPEDKNSRELCRTIINLADSLDMEVTAEGIETQ 776

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                L  + C   Q    + PL    +   L +R+
Sbjct: 777 AQHAFLQSLNCGEGQGYLFSKPLHVEHMGDRLHQRY 812



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +R  LA+  +   VW+W +  DR+     I  +LG+ +   HG ++ ++        
Sbjct: 139 ETEQRLQLAMRAAQIGVWEWHVAEDRLLFDGQIEPLLGIEANQFHGGLQAFVDCFEPESG 198

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              +  L S        +        A N+ HW+ I    +  +     R +G+ ++ T 
Sbjct: 199 SQLKAALQSH-----DPIHLTLSYLTALNERHWVDIHADHVPATESIGHRVMGVIHNATA 253

Query: 522 QKKSLEGILCNAF 534
           +++  E  L  A 
Sbjct: 254 RRRQEER-LHQAN 265



 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 6/131 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  +   +  +D           +A I G +     G     L  +          
Sbjct: 23  LEQLMDNAPLGIGVFDCEFRYRKVNQVLADINGKSIEEHQGKH---LREVVPKLAPTLEP 79

Query: 467 ILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +    +      +      + A  D+          PM +  G++   + I  DITEQ +
Sbjct: 80  MFQQIMRSGLPYVDIAITGQTAAYDSSSRRFQATYSPMRDEKGELNGILAIVRDITEQYE 139

Query: 525 SLEGILCNAFQ 535
           + +  L  A +
Sbjct: 140 TEQR-LQLAMR 149


>gi|300694165|ref|YP_003750138.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
 gi|299076202|emb|CBJ35516.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
          Length = 892

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/580 (23%), Positives = 262/580 (45%), Gaps = 11/580 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      +G+    ER  LA+    + V    +    +        IL +  G + G  
Sbjct: 306 AIQKDTTERGLAESEERYRLAISHLNEGVLIQTLDGVVLAANTSAERILRVRPGQLVGRN 365

Query: 450 R-NWLPYI---HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           R + +  +   H  D                  L   + +     +  W  + I P+   
Sbjct: 366 RLDMMQRVVDEHGKDVALDVLPSKVVRQSGEPILGRVYGLLLKTGELIWTRMNIIPIRRH 425

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +    DIT+ K++ + +   A  D LTG+ NR  F+  L   ++ +  D++ 
Sbjct: 426 GDAAPSSIMLSFADITDFKRAEQRLRHLASHDALTGLTNRSFFIAHLEGAIERA-RDESR 484

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L S   R+ + +   D++ARL G+ F I++   
Sbjct: 485 ELALFFLDLDRFKSVNDTAGHACGDTLLQSAAARLTDCIGPGDVIARLGGDEFVILIEQR 544

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +IA  A  +  ++  P + +     +  SIG A +    I+ +++L++A+ AMY A
Sbjct: 545 VEGKRIALLAERLLAAMREPFDTVNGRYYLGVSIGVALYPHDGISGTDLLRSADAAMYRA 604

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + +        +    ++  L  A +N EL LVY P   L    IVG EAL+
Sbjct: 605 KQNGRNRAQFYTAELNARLQRRYLLENALRDACDNRELQLVYQPKYDLASHRIVGAEALL 664

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+  K G +S  EF+ +AEE  +I  I  ++L R     ++W          + +N+++
Sbjct: 665 RWNSVKLGAVSPVEFIPVAEETGLIVPIGEWVLRRACEQAVAWYQALGY-DFRMAVNLSA 723

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  +++T   P+ +++  +ES++MG  +  R +   L   GI +++DD
Sbjct: 724 RQFQTGDVVPMIEQTLAETGLPPTALEVEITESLLMGGADEVRPMFDALTAQGIRISIDD 783

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S + G       +A+  +I+ MA+ +  T+ A+ +  
Sbjct: 784 FGTGYSSLSYLQRFPISNVKIDRSFILGIPGDPDSVALTEAIVAMARALGMTVTAEGVED 843

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              ++ L + GC  IQ  ++  P+      +LL+    +V
Sbjct: 844 ADQVEFLAKAGCQEIQGYYIGKPVTAEGFDRLLRAHLAVV 883



 Score = 39.2 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 6/113 (5%)

Query: 423 IVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           +    V        +L +     + G     +  IH +D       L             
Sbjct: 33  VDGRIVQGNQAATQLLAVPVPERLLGV--ALVSLIHPDDVGQVMPSLSRVAAGSLPAEPI 90

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           E R+  AD     +       +++ G     + +  D   +  +LE     A 
Sbjct: 91  EHRLVRADFTHVLVTSEAARCTHA-GQPAVML-VLRDAGSRH-ALERNAVQAR 140


>gi|121592523|ref|YP_984419.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax sp. JS42]
 gi|120604603|gb|ABM40343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax sp. JS42]
          Length = 1108

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 148/581 (25%), Positives = 268/581 (46%), Gaps = 15/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
             L                + +     R S A+  S   V   DI    V      + + G
Sbjct: 530  ALQTVADALWKHTAQRRQEAVIH---RLSEALDQSPSPVVITDIDASIVYVNKAFSEVSG 586

Query: 440  LASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +  + G   R     +    R  +  +       R    Q E   R  + Q +     
Sbjct: 587  YGAQEVLGRNPRVLQSGLTP--RTTYADMWTKL--PRGLPWQGELINRRKNGQVYTENAS 642

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + P+ +  G++  Y+    DIT+++++ E I   +  D LTG+ N+++F ++LT  +D +
Sbjct: 643  LYPVRDVFGEVTHYVAHMEDITQRREAEERIRALSNYDTLTGLLNKKAFDEQLTQAIDRA 702

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                + R +V+  D+D +K +N+ LG A GD++L+ +  R+   L     +AR SG+ F 
Sbjct: 703  DAS-HERVSVLWFDLDNFKLVNETLGHAAGDELLLEMGNRLRACLAPHIPVARYSGDAFT 761

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
             I+    +   +A  A      +   + +    ++V+AS G A +     T+S +   AE
Sbjct: 762  AIVP-LADQAAVALLAQDALAQLQTTLQIHGHAVSVSASAGIAVYPDDARTASTLASAAE 820

Query: 679  LAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIV 736
            +AMY  K  G N +  F        +  ++    L  A    EL+LV+ P   L    + 
Sbjct: 821  VAMYRVKQDGRNGLRFFAPEMQAHTQRSLELAAGLKDAAHRGELFLVFQPQRTLGSGALA 880

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            G EAL++W HP+WG +S +EF+ IAE+   I AI+ +++E++A+ + +W D A +PP+ +
Sbjct: 881  GAEALLRWRHPRWGLVSPAEFIPIAEQSGSIVAIDFWVVEQVAQQLRAW-DAAGLPPLVV 939

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N+++         E +  ++ +   SP RI++  +E+V + NPE++   + RL ++G 
Sbjct: 940  AVNVSAAQFARPHFVEELVRILQRMDISPQRIEVELTEAVALKNPEQAETTIRRLHEVGF 999

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
             + LDDFGT  S +SYL     D +K + S +     +    AI+ +II MA ++    I
Sbjct: 1000 RVALDDFGTGYSSMSYLKRYAIDKLKIDQSFVRELAHQASDQAIVTAIIKMAHSLRMATI 1059

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +        L   GCD +Q    + PL   +    ++ 
Sbjct: 1060 AEGVETAEQAALLQACGCDEMQGYWYSRPLEPAAFEAFVRN 1100



 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 85/323 (26%), Gaps = 33/323 (10%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM-------VTASIARITLASIVLYYTY 324
           +L     +A + ++     A   +L     + P        +T    R   A    Y   
Sbjct: 139 WLGRRSRYAGLLWVALLVGAVHYVLLGHPQWLPRTFTPEAGLTPFKVRFEYALATAYVLA 198

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
            + +     +  A     + + +  + + +         N      + G    I+     
Sbjct: 199 GVGFLTQLRH--AREFGLSHLALASFTMAMSEIFFTLYANVTDVYNVAGHFYKILAYGFL 256

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                V         + +   RQ   +    D++++ D     +    +  + L      
Sbjct: 257 YRGLFVETVQIPYLDLRAAEARQRATLNTLPDLLFEVDRKGVYLAVHANETSKLLTPLPQ 316

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMS 503
           + G   +    +            ++     R  +    R+            + +   S
Sbjct: 317 LLGKTLD--EALPP---AAAAQCFEALAEAERTGMSRGQRITLPLPLGERHFELSVSRKS 371

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL-----------DRLT 552
              G    ++ ++ DIT   ++ E I   A      G+ N                D L 
Sbjct: 372 AVAGQPDTFLMLSRDITPTVENEERIRSEA------GL-NAVLLDLQQHDIHQPEADLLR 424

Query: 553 TILDLSATDDNLRPTVMVIDIDK 575
             L  + T       V+    D 
Sbjct: 425 RGLAHAQTLTGSALAVLYFVHDD 447


>gi|117618131|ref|YP_856095.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559538|gb|ABK36486.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 838

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 145/584 (24%), Positives = 262/584 (44%), Gaps = 20/584 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +G  +    +      + + SD + R S     + + +   D     +      + I G 
Sbjct: 246 LGSVLTTFSMRMVAELERLQSDAQLRLSAVAFETHEGIIITDPDFKILRVNHAFSQITGF 305

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            S  + G        +H+ +          +      R Q E +   AD   +     + 
Sbjct: 306 DSQRVIG--------LHLGNDLWCGLGGLGYELGTLSRWQGETQRLHADGYPYPQWEIVT 357

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +  G+I  ++    DI+E+K++   I   A+ D LTG+PNR+   + L      ++ 
Sbjct: 358 PVQDDRGEISHFVICFEDISERKEAERRIQDLAYYDELTGLPNRRQLHETLAHAFGEASR 417

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D  L   ++ ID+D +K IND LG A GD +L  +  R+  L++  D LARL G+ F ++
Sbjct: 418 DY-LIGALLFIDLDHFKTINDSLGHATGDWLLKEVASRLKRLVRQGDCLARLGGDEFVLL 476

Query: 621 LISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           L S         ++    A  +   IA P N   + + + AS+G   +   +    ++LK
Sbjct: 477 LPSLSASPPQAEMQADLIAERLISEIAAPYNHAGQVLHIGASVGITLFPGREQGVDDLLK 536

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE 733
            A+ AMY AK  G      F  S        +    +L  A+   EL L Y P   +   
Sbjct: 537 QADTAMYQAKSAGRKTRRFFDASMQLQADRRLLIHNELRSALNQQELTLYYQPQHMVEGG 596

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +I+G+EALI+W  P    +S +EF+ IAEE  +I  I  ++L       + W +     P
Sbjct: 597 DIIGVEALIRWQPPGRALVSPAEFIPIAEETDLIVDIGNWVLYEACAQYVRWEENGIHIP 656

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + +N+++K     +  + +  +++ T   P+ + L  +ESVV+G+ E +   +  L+ 
Sbjct: 657 -QLSVNVSAKQFHATDFVDRIHDVLASTGMDPASLNLEITESVVLGHAEDTISKMSELKA 715

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +GIS  +DDFG   S LSYL  +P D +K + S +         +AI+ ++I MA+++  
Sbjct: 716 LGISFAIDDFGAGYSSLSYLKRLPADELKIDRSFIQDIPRDGDNMAIVEAVIAMARHMGF 775

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + A+ +     ++ L   GC + Q    + PL    + + ++ 
Sbjct: 776 NVTAEGVESRQQLEFLQAQGCHFYQGYLASKPLPVPYLERYVQR 819


>gi|213968309|ref|ZP_03396453.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213926947|gb|EEB60498.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 763

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%)

Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453
             ER  L    V+ + D +        D+     V   P    I G     + G     L
Sbjct: 169 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 228

Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 D       ++   + + R  ++ E      D    W+ + I P++N  G    +
Sbjct: 229 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 284

Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545
           + +  DITE+K                           +  E +   AF D LT + NR 
Sbjct: 285 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 344

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             ++ L             R TV+ +D+D +K +ND +G   GD +L  +  R+   ++ 
Sbjct: 345 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 403

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   
Sbjct: 404 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 463

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
                 ++L++A++AMY AK +G      F  S      D ++I+  L  A+EN +  + 
Sbjct: 464 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 523

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI     E +VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   D+ 
Sbjct: 524 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 583

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +WR       + + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+ 
Sbjct: 584 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 643

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
              +L ++R +G+ + LDDFGT  S L Y+   P D VK + S ++     ++  AI+ S
Sbjct: 644 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 703

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ + + ++  I A+ +        L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 704 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 757


>gi|257094786|ref|YP_003168427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047310|gb|ACV36498.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 708

 Score =  517 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 152/613 (24%), Positives = 281/613 (45%), Gaps = 15/613 (2%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           +G    ITK ++  I +  +   L    +       +  LAT              +   
Sbjct: 99  LGAADYITKPINVAIARQRISNFLEREGLRKEVEAQRDRLATLVAELERAEGELSIAAVA 158

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             S + +   D     +        + G ++    G     L     +D   ++ + +S 
Sbjct: 159 FASQNGMVITDPKGVILRVNQSFTRLTGYSAAEAIGRTPAVLKSGRHDD-PFYQRMWNSL 217

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           V   +G  Q E   +    Q +  ++ I  +  S G    Y+   +DITE K++   I  
Sbjct: 218 VE--KGYWQGEIWNKRKSGQIYAELLTITAIVASGGITTHYVASFSDITEDKQAEAEIHR 275

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LT +PNR+   DRL   L  +A    L   +  I +D +K +ND  G  VGD +
Sbjct: 276 LAYYDALTRLPNRRLLQDRLGQALAAAARH-GLYGALFFIGLDNFKTLNDTRGHDVGDLL 334

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPIN 646
           LV + + +   ++  D +ARL G+ F ++L   + +         +    +R++ + P +
Sbjct: 335 LVEVAQCLRAQVREGDTVARLGGDEFVLLLDGVSGNADEAAAVAKEVGDKLREATSRPFS 394

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           L  +E     SIG + + ++  T  E+ K A+LA+Y AK+ G + +  F  +   +  + 
Sbjct: 395 LDGQEYRCKLSIGVSLF-AALDTVEELFKRADLALYQAKNAGRDRLRFFDPAMQAAMDLR 453

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ DL  A+   +L L Y P I      ++G+EAL++W HP+ G +S +EF+ +AE  
Sbjct: 454 GALESDLHQALALDQLRLHYQPQIDTA-GRVIGVEALLRWWHPQRGLVSPNEFVPLAEST 512

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I  ++LE     I +W   A    + + +N++++     +  E ++  +  +  +
Sbjct: 513 GLILPIGRWILETSCVLIKNWESDACTRSLQVAVNVSARQFRQADFVEQVKRSLKASGAN 572

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P+R+KL  +ESV++ N E +   +  ++++G++ +LDDFGT  S LSYL  +P D +K +
Sbjct: 573 PARLKLELTESVLLKNVEDTIAKMLAIKRLGVAFSLDDFGTGYSSLSYLAQLPLDQLKID 632

Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +      R    I R+II M + ++  +IA+ +  E   + L   GC   Q    + 
Sbjct: 633 QSFVRKLPGARKEETIARTIITMGRELDMNVIAEGVESEAQRQFLEAHGCHAFQGYLFSR 692

Query: 943 PLGFNSILKLLKE 955
           PL    +   L+E
Sbjct: 693 PLPVEHLTVFLQE 705


>gi|186471945|ref|YP_001863263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184198254|gb|ACC76217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 980

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/567 (24%), Positives = 255/567 (44%), Gaps = 21/567 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453
           ++ +  + E ++L    S D +  +D    R    P   +  G + G   G   + +   
Sbjct: 414 AELVSRELESRTLI-ENSPDTITRYDRDLRRTYANPAFCSSAGRSLGEALGKRPSEIPGG 472

Query: 454 --PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I+       R I +     + G+   E R  + D Q     IR+ P  + +G +  
Sbjct: 473 ANALIYE------RKIGEVIASGKSGQF--ELRWLSKDGQEQCSHIRLTPEIDPSGKVNS 524

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D++++      I   A  D LT +PNRQ F +RL     ++    + R  +M+I
Sbjct: 525 VLAVGRDLSDRMAFEAAIWQQANFDTLTQLPNRQMFQNRLEQEAKVAQRSGH-RMALMLI 583

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K++ND LG   GD +L+   RRI   ++  D +ARL G+ F +IL   +N   I 
Sbjct: 584 DLDRFKEVNDSLGHDTGDTLLIEAARRITSCVRESDTVARLGGDEFTVILPDIDNCGSIE 643

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + ++++ P  L   E  ++ASIG   +         + KNA+ AMY AK+ G N 
Sbjct: 644 RIARTIIETLSEPFALGPDEAFISASIGVTVYPDDARELDVLFKNADQAMYAAKNAGRNR 703

Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F          R+ +  DL  A+ + +  L Y PI+ L   +I   EALI+W HP+ 
Sbjct: 704 LNYFTPDLQVAAEKRLRLTSDLRTALPHDQFRLYYQPIVDLSTGDIFKAEALIRWLHPER 763

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  +F+ +AE+  +I  I  ++  +  +    WR + + P   I +N++   +  + 
Sbjct: 764 GMVSPLDFIPLAEDTGLIVPIGEWVFRQAVQQAKLWRQRFH-PSFQISVNMSPVQIRQDN 822

Query: 810 LCEGM-QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
               +    +++       I +  +E +++         L   R  GI +++DDFGT  S
Sbjct: 823 QLGALWSDYLTREGMPGQSIAIEITEGLLLHADLNIDARLATFRHAGIRISIDDFGTGYS 882

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL     D +K + S +          A+  +++ +A  +   +IA+ +        
Sbjct: 883 SLAYLKRFDIDFLKIDRSFVQNLGFDADNQALCEAMVVLAHKLGLKVIAEGVETVEQRDF 942

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           LT +GCD+ Q    + P+  +    L+
Sbjct: 943 LTAVGCDFAQGFLYSQPVPPDQFETLV 969


>gi|71279397|ref|YP_270237.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71145137|gb|AAZ25610.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
            psychrerythraea 34H]
          Length = 1071

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 149/582 (25%), Positives = 272/582 (46%), Gaps = 15/582 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              + +          +      +R S AV   + + +   +      T  P    I G +
Sbjct: 487  EISDMVIAFNQMLAERIKSEGEQRISAAVFKYASEAIMITNAENRIETVNPAFCHISGFS 546

Query: 442  SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               + G   N L     ++   F   +   +       Q E   +  + + +   + I  
Sbjct: 547  IEEVLGKSPNILNSGKHDNH--FYQKMWQSLEQDN-SWQGEIWNKRKNGEIYPEFLAISV 603

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + + +   L+YI + +DIT+ KK  E I   A  D+LTG+PNR   ++RL   L     +
Sbjct: 604  VRDQDKKPLQYISLFSDITKHKKYEEDIWLQANYDSLTGLPNRGLCVERLHNKLKGDKAE 663

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            D+    ++ ID+D++K +ND  G + GD++L     R+   ++  D +AR  G+ F ++L
Sbjct: 664  DS-EVALLFIDLDRFKFVNDTWGHSSGDELLKLAAIRLRNCIREKDTVARFGGDEFVVLL 722

Query: 622  ISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            +  +N   I      +  S++MP +L    E  V+ASIG             +LKNA+ A
Sbjct: 723  VGLSNRFAIERVVKNILTSLSMPFHLRNNNEAVVSASIGVTIGPVDGDNVELLLKNADTA 782

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            MY AK  G N  + F  S   +    +  ++ L  A++  E  L Y P++ L   EI+G 
Sbjct: 783  MYQAKAAGRNTFQFFTKSMNETVSRRMHIEQALRQAIKRQEFVLHYQPVVSLDTGEIIGA 842

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EALI+W HP  G I    F+ IAEE  +I+ I  +++E+   D+  W D      I + +
Sbjct: 843  EALIRWQHPDKGLIYPDSFIEIAEEAGLIEPIGQWVIEQACTDLRYWHDLG--LKIQVAV 900

Query: 799  NIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            N++S+         + + ++  +     SPS +K+  +ES +M N E     L  +R +G
Sbjct: 901  NVSSRQCKQTSQTPIKDIIKKALKVNNISPSSLKVEITESSLMDNSEEMMTTLQDIRSLG 960

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
            +++ +DDFGT  S LSYL + P D +K + S + GS   +   +++ +++ +  ++   +
Sbjct: 961  VAIYMDDFGTGYSSLSYLKHFPIDVMKIDRSFIAGSIDDKTDASLVEAVVLIGHSLSLKL 1020

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + + I  +     L  +GCDY Q   ++ P+   +++ L ++
Sbjct: 1021 VGEGIETKQHYDYLRSLGCDYGQGYFISKPIASKALITLCQQ 1062


>gi|127510976|ref|YP_001092173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella loihica PV-4]
 gi|126636271|gb|ABO21914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella loihica PV-4]
          Length = 1094

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 160/640 (25%), Positives = 285/640 (44%), Gaps = 14/640 (2%)

Query: 324  YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
               +  G+       L +     + +  +   +     L   + Q   +   V +     
Sbjct: 451  LSFLVLGIMAAMCNFLFLIVLGRLIVNNLVTRIGTIASLMQRMAQNTQLQLSVPVDGRDE 510

Query: 384  FTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +   L A     Q    +    S       + +   D         P    I G   
Sbjct: 511  VAKMAMALNAMLSERQEANRELSLASAVFEYCAEGIVVTDKDNLIEAVNPAFTQITGYTL 570

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G     L   H      +  +  S   Y  G+ Q E   +  + Q     + I  +
Sbjct: 571  EEVKGRSPAVLNS-HQQPHHFYEQMWQSLKQY--GKWQGEIWNKRKNGQIFPEYLAITVV 627

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +  G ++++IG+  DI+ +KK  + I   +  D LT +PNRQ +  RL+ +L L+    
Sbjct: 628  KDDKGRVVQHIGLFLDISNRKKYEQDIWYKSNYDALTNLPNRQLYTSRLSQMLQLAEQR- 686

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 V+ ID+D++K IND+ G AVGD++L     R+  LL+  D +ARLSG+ F +++ 
Sbjct: 687  CCSVAVLFIDLDRFKYINDIYGHAVGDELLQVAAARLEALLEQHDFVARLSGDEFVVVMG 746

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  +I   A  + + ++ P  +   E+ ++AS+G + + S+  +   + +NAE AMY
Sbjct: 747  HTKHQGEIEQRAQNILQHLSSPFGINRNELLISASVGISCYPSNGTSVEVLTRNAETAMY 806

Query: 683  HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G N    F      +      +++ L  AV   E  L Y PI+     E V LEA
Sbjct: 807  QAKQDGRNCFGYFSPDMNNNMLARITLEQSLRSAVLQHEFCLHYQPIVDTSSGEGVALEA 866

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++W HP+ G +   EF+ IAEE  +I+ I  +++++  RD+     Q  M  I + IN+
Sbjct: 867  LLRWRHPQRGLVPPDEFIPIAEETGLIEPIGEWVIQQALRDLRQCHSQGIM--INMAINV 924

Query: 801  ASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            + + L   +       +  L+ K   +P  + +  +ES++M + E S   L  +R +G+ 
Sbjct: 925  SGRQLAHGDPSHFACMLNGLLQKYDVAPQYVHIEITESILMADTELSLKALTAIRHLGVE 984

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFGT  S LSYL   P   +K + S +    E      ++++II M ++++  ++A
Sbjct: 985  IYLDDFGTGYSSLSYLKQFPISVIKIDKSFVDNMLEDRADANLIKAIITMGQSLDMRLVA 1044

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +  E     L  +GCD++Q   VA P+    +  LL+ 
Sbjct: 1045 EGVESEPQRSFLQGLGCDFVQGYLVAKPMPLKELEPLLRR 1084


>gi|146282167|ref|YP_001172320.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
 gi|145570372|gb|ABP79478.1| sensory box/GGDEF family protein [Pseudomonas stutzeri A1501]
          Length = 708

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 151/574 (26%), Positives = 260/574 (45%), Gaps = 10/574 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           I+ + A     + +     R       + + ++        +   P +A I G  ++  +
Sbjct: 134 IEDITAQRAVLEALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSASEL 193

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              + +    +++      R      +      L +E  V   D    W+      +   
Sbjct: 194 VADLADIERRLYVQ--PGRREAFCQLMEQHGEVLNFESEVYRRDCTRIWISENAHVVRGP 251

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG+ + Y G   DI+E+K   + +   A  D LTG+PNR    DR+   L  +A      
Sbjct: 252 NGEFICYEGTVQDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARL-GYY 310

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            T++ ID+D +K IND LG   GD++L S+  R+   L+  D +AR+ G+ F ++L    
Sbjct: 311 LTLVFIDLDNFKFINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLGDHY 370

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               +      +   I  P+ L  RE  V AS+G A +      +  +LK+A++AMY AK
Sbjct: 371 RISTVISLLERVLNEIRRPVTLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAK 430

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N+ + F     R   +R+ ++  +  A+E  E  + Y P +      IVG EAL +
Sbjct: 431 KRGRNNFQFFTHDLNRIADERLNLEAAMRTALERDEFAVHYQPKVDAQ-RRIVGFEALAR 489

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W H   G I    F+ +AEE  +I  + L +L R   D   W       P+ + +N++  
Sbjct: 490 WTHADLGVIGPDRFVPVAEESGLIMPLTLAVLRRAFSDARRWNA-GRQVPLLVAVNLSPL 548

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L +++ E + A++ +   SP  ++L  +E+V +G+  R+  +L   +  G  L +DDF
Sbjct: 549 LFLGDDVVERVMAVLDEVGLSPLLVELEITETVFLGDGSRAVSILADFKARGFRLAMDDF 608

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L YL   P D +K + SL+TG  ++     I R+ I + K++  T++A+ +   
Sbjct: 609 GTGYSALGYLRRFPLDIIKIDRSLVTGLEQEDEVAMIARAAISLGKSLHKTVVAEGVENA 668

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + L   GCD  Q   ++ PL    I  LL  
Sbjct: 669 AQFEFLRHNGCDEFQGYLLSRPLPATGIDALLAA 702



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            VL        + ++ E   +A     D  W        +  +     + G ++ ++   
Sbjct: 16  EVLDRSRVLDTLVNNLE--GMAYRCRNDASWT------MIFVSQGSLGLCGYSAAALVDD 67

Query: 449 IR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +W    H +DR   R  +D  +    GR    +R+R A     W+I R   + +  G
Sbjct: 68  AEVSWEQITHPDDRARVRRSIDGAIAA-LGRFTVHYRIRTAAGFIKWVIERGVAVPDEQG 126

Query: 508 DILRYIGIANDITEQKKSLE 527
           +I+   G   DIT Q+  LE
Sbjct: 127 EIV-VEGFIEDITAQRAVLE 145


>gi|332162863|ref|YP_004299440.1| hypothetical protein YE105_C3243 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604293|emb|CBY25791.1| conserved putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667093|gb|ADZ43737.1| hypothetical protein YE105_C3243 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 854

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/572 (24%), Positives = 267/572 (46%), Gaps = 17/572 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +    A       + +  ER       + D +W+ D        +    TI GL+   
Sbjct: 286 RAMTEARAADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGLSVEH 345

Query: 445 MHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             G   + L      D    R+ L  + +   R  LQ  +   +A        I  +P+ 
Sbjct: 346 WLGRNLDSLLNC---DVIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYAKPII 400

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++ +I  + G A+DIT + ++ E I   +  D LTG+PNR    + L   L   A   +
Sbjct: 401 KNDQNI-GFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPH 459

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +I+  
Sbjct: 460 -PLVILNVDLDKFKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISG 518

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +++ +I      +   I  P  + E++I ++ASIG A      + + E+L+ A++AMY 
Sbjct: 519 LSSTKEIEQLCARVIARIESPYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYE 578

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK+ G N    +             ++  L  A++++E  L Y P  R+   ++ G EAL
Sbjct: 579 AKNSGSNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFSLYYQPRYRIKGTQLTGAEAL 638

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G +   +F+ +AEE  +I AI+ + + +  +D  +W        + I +NI+
Sbjct: 639 VRWNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIISVNIS 693

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +     L E ++ ++  +     R++L  +E +++ + + +   +  L+ +G+ L++D
Sbjct: 694 AIEFRSQRLIERVRQVLLLSGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMD 753

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ A+ + 
Sbjct: 754 DFGTGYSSLNYLRRFPFDGLKIDKSFIDELTQSHEGRSIVEGIINLGHALSMTVTAEGVE 813

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++ L  + CD  Q   +  P+  + +L 
Sbjct: 814 TTEQLEHLQTLMCDEAQGYLLGKPMKLSELLN 845


>gi|56475524|ref|YP_157113.1| sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1]
 gi|56311567|emb|CAI06212.1| Sensory box/GGDEF family protein [Aromatoleum aromaticum EbN1]
          Length = 1008

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 147/575 (25%), Positives = 252/575 (43%), Gaps = 14/575 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASG 443
             IQ +         + +  ER S+A+  +   V    +     V          G    
Sbjct: 400 GAIQDITELRATETALRNSEERFSIAMTAAPFAVAITRVEDGRFVEVNDKYELHFGWKRE 459

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G              R  +  +L          L +E      +     + +  R +
Sbjct: 460 ELIGKTSVETNLWPDPESRQRWLEMLRQH----GSVLDFETLGCERNGAVRQVSLSSRYI 515

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + +G+    +   +DIT++K++   I   A  D LTG+PNR  F DR       +    
Sbjct: 516 -DIDGE-KHVLTFVHDITDRKEAQARIEYLAHHDALTGLPNRVLFRDRFALATAWAERA- 572

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           + +  ++ +D+D +K IND LG  VGD +L  +  R+ E L+  D ++RL G+ F I L 
Sbjct: 573 HAKVALLFVDLDHFKTINDTLGHPVGDGLLQGVALRLRECLRETDTVSRLGGDEFLIALT 632

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +   I      +  ++  P  L   E+T T SIG A W         +LKNA+ AMY
Sbjct: 633 DIRDPQAINSATAKIFDTLTRPFELEGHELTNTMSIGIAIWPDDGEDFDTLLKNADTAMY 692

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    +      +  +++ ++  L  A+EN E  L Y P I L    +VG+EA
Sbjct: 693 QAKRAGRNTWRFYTEQMNANAVEQLQLRTALHSALENDEFLLHYQPQINLASGHVVGVEA 752

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W   K   +    F+  AEE  +I  I  ++L       + W  Q   P + I +N+
Sbjct: 753 LLRWHWDKRELVPPDRFIPAAEESGLIVPIGDWVLREACMQAVRWTRQGL-PELTIAVNL 811

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++      +L   +   +S +   P+R++L  +ES+++ + E     L RL+ +G+ L++
Sbjct: 812 SAVQFRRGDLERSVVRALSLSGLDPARLELELTESLLLVDTESVIETLRRLKSLGVRLSI 871

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL     D +K + S +          AI+R+I+ MA  ++  +IA+ +
Sbjct: 872 DDFGTGYSSLAYLKRFAVDKLKIDQSFVRDIATDPDDAAIVRAIVSMAHTLKLQVIAEGV 931

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             E   + L    CD  Q  H A P+  +++ + L
Sbjct: 932 ESEDIDRFLHIFNCDEAQGYHYARPMPGDALAEWL 966



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 24/191 (12%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     + + A L +    W+W +    +        +LG A G +      +L ++H +
Sbjct: 287 VKESRRQLAEATLLAHVGYWEWQLPAGVLHWGEQTDRLLGHAPGKVTPSGATFLAHVHPD 346

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR+         V  +      EFR+  AD              +  G  +R  G   DI
Sbjct: 347 DRERVAGEFAGAVRNQ-CSYVSEFRLIRADGALRIARANGHLQYDREGRAVRVCGAIQDI 405

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID--KYK 577
           TE + +             T + N     +R +  +  +         V +  ++  ++ 
Sbjct: 406 TELRATE------------TALRNS---EERFSIAMTAA------PFAVAITRVEDGRFV 444

Query: 578 KINDVLGIAVG 588
           ++ND   +  G
Sbjct: 445 EVNDKYELHFG 455



 Score = 38.8 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 34/143 (23%), Gaps = 8/143 (5%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                 +  + +        +  +       D        +  +  +L L +     P+ 
Sbjct: 45  RELEDRNAALANLNRDYDHLLASTKIGTVFLDAGLRVRRFSAAVEDVLALRASDAGRPLA 104

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                    D   F   L        G      R R  D    W + R+ P     G   
Sbjct: 105 EITYR--AGDASRFLADLQHVATTGEG------REREVDVGGRWYLERMLPFHGEGGVRD 156

Query: 511 RYIGIANDITEQKKSLEGILCNA 533
             +    DI   K +   +   A
Sbjct: 157 GVVLTYTDINRVKTAQTEVAVLA 179


>gi|77461863|ref|YP_351370.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385866|gb|ABA77379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
          Length = 989

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/578 (24%), Positives = 268/578 (46%), Gaps = 8/578 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +         S+ + +  +  +     + + +   D     +      + + G   
Sbjct: 412 RVIRMVGTRRDISVSKSLEAQQQLAATVFEAASEGIVILDPNYSLIAINQAFSRVTGYDI 471

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G M G     LP     D       +   +    G  Q E      + + +   +++  +
Sbjct: 472 GDMLGRNVVELPC--SRDARRHYVAIRHALEQ-HGSWQGELVETRKNGELYPQWLQLNAV 528

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +S G++   +G   D++ +++S E +      D LTG+ NR  F +RL           
Sbjct: 529 RDSRGNVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLHEAHQRVRQGG 588

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ I++D++K +ND LG  + D +L  ++RR+   L   D +ARLSG+ F ++  
Sbjct: 589 RRSLALLHINLDRFKLLNDSLGHEIADQLLQKMSRRLVNALPEADTIARLSGDEFAVLFD 648

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  N   +A  A  +   + +P+ +   E+ V+AS+G +    +    S ++  + +AM 
Sbjct: 649 AYGNLSSLARVATRLSSKLRLPLTVEGHELVVSASMGISMLPDNAREISALVSQSNMAMQ 708

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAKH GGN+ + +  S   S   R+ ++  L  A+E+ +L + Y P + L    +   EA
Sbjct: 709 HAKHLGGNNFQFYTDSLQASTLERLQLENQLRKAIEDKQLNVFYQPKLCLATGRLNAAEA 768

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++WDHP  G +   +F+ +AEE  +I  I  F+L +       W+ Q    PI + +N+
Sbjct: 769 LVRWDHPTMGRVPPGDFIGLAEETGLIGPIGEFVLRQACWQACEWQRQGLA-PIRVSVNL 827

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L   ++ ++ +T  +P  ++L  +ES ++ + E       +LR +G+ L +
Sbjct: 828 SVHQLRQGKLVSLVRQVLEETGLAPHYLELELTESQLLDSVEHIIATFQQLRDLGVKLAI 887

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  IP D VK + + + G  E  +  AI R+II MA  +   ++A+ +
Sbjct: 888 DDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGSEDAAITRAIIAMAHGLSLKVVAEGV 947

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                +  L   GCD +Q   ++ P+    +  LL+E+
Sbjct: 948 ERSEQLAFLKAEGCDEVQGYLISRPVEAVGLAALLREQ 985



 Score =  134 bits (337), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   V Q        +Q +     R +LA+  S   +WDW++  D V  T  I  + G+ 
Sbjct: 286 LEDRVAQRSRELDVANQALSKSEARLALALKASELGLWDWNLQTDEVHHT-QIQELFGID 344

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G +R+  P +H  D    +  L   +  R    Q E+RVR  D  + W+  R R 
Sbjct: 345 PEYVTGLLRHLRPRLHPEDVPPLKRALIEHLKGRTEDYQIEYRVRHGDGHWVWIEDRGRA 404

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  + NG ++R +G   DI+  K         A 
Sbjct: 405 VERDENGRVIRMVGTRRDISVSKSLEAQQQLAAT 438


>gi|226225788|ref|YP_002759894.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
 gi|226088979|dbj|BAH37424.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
          Length = 966

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 155/673 (23%), Positives = 291/673 (43%), Gaps = 18/673 (2%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
            L  + F        +                +         +V ++P   ++  + + L
Sbjct: 281 GLPDLGFVVRPAACFLMAAAGWLSSATVMRRDVRPSRDRDGPSVSILPYAAVVPGFALLL 340

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            MA  +R    ++   L    +  +  +          +            R    V  S
Sbjct: 341 RMAFEERHQ-PLLGLVLGAAALTAIAFVRQFAASREAVSTLAEASARDSEARFRSLVQHS 399

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG- 473
            D++   D        +P ++T+ G     + G   N L  +H+ D+ +    L+     
Sbjct: 400 SDVIMIVDPDGTLRFASPSMSTVFGHEPSRIVGT--NLLSLLHVEDQQHAVQFLEELARS 457

Query: 474 ------YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                    G L+ E+R+  +D  +  +      +      +   +  + D+TEQ    +
Sbjct: 458 GARTGAGSPGVLKREWRLAHSDGSWMTVDNVGTNLL-REPVVRGLVLNSRDVTEQSMIKQ 516

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +  AF D LT + NR  FL ++   L   A   +   TV+ +D+D +K +ND LG A 
Sbjct: 517 QYIHQAFHDPLTDLANRSLFLYQVGHALARGAR-QHSPVTVLFLDLDNFKTVNDSLGHAA 575

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LV   RR+   ++  D++ARL G+ F +++    +  ++   A  +  +++ P  L
Sbjct: 576 GDRLLVDAARRLASCVRSSDLIARLGGDEFAVLVEDAQSVEEVLVVASRIGTALSRPFML 635

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             +E+ V+AS+G A  +    +S E+++NA++AMY AK RG      F      +    +
Sbjct: 636 SGKEVFVSASVGIARSSR-GESSDELVRNADVAMYVAKTRGKGQHVLFEQEMHDAALERL 694

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + DL  A+E  E +L + PI+ L    I+G EAL++W   + G +    F+ IAE   
Sbjct: 695 VVEADLRRAIEREEFFLEFQPIVELDTGNIIGAEALVRWLCRERGTVPPGVFIPIAEVTG 754

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++L R  R+   W  +  +    I +N++ + L D  + + ++  + +T   P
Sbjct: 755 LIVPIGKWVLRRACREAQRWTRERGIAA-RITVNLSGRQLQDAGIVDDVRQALEETGLDP 813

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +++ L  +ES++M N + S   L  L+++G+SL +DDFGT  S LSYL   P D +K + 
Sbjct: 814 TQLVLEITESMLMQNTDVSMARLTALKELGVSLAIDDFGTGYSSLSYLQRYPIDILKIDK 873

Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +    +  +   +  +I+ +   +    +A+ I  E     L  +GC+  Q    + P
Sbjct: 874 AFVDVIDKGGEGPVLASAIVALGDTLRMNTVAEGIETEAQRGHLLTLGCELGQGFLFSPP 933

Query: 944 LGFNSILKLLKER 956
           L       LL  R
Sbjct: 934 LDEEEFWHLLLAR 946


>gi|167644705|ref|YP_001682368.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167347135|gb|ABZ69870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 735

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 132/531 (24%), Positives = 249/531 (46%), Gaps = 14/531 (2%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVR 486
           V        +LG A   M G         +  ++       D+  +     R+  E  V 
Sbjct: 176 VLLNRAGEKMLGHARADMIGRTDVDF---YPAEQAAIYRERDAEVISSGEVRVIEEDHVP 232

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D     +  +   +   +G     +G++ DI E+K++   I   A  D LT +PNR  
Sbjct: 233 RKDGSIALLRTKKIAIPGPDGAAEYLLGVSEDIAERKRAEAQIARLAHYDPLTDLPNRLL 292

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L+  L  +A  ++L   V  ID+D++K +ND LG  +GD +L +   R+   ++  
Sbjct: 293 FQKDLSAALSRAARREDL-VAVHCIDLDRFKTVNDTLGHPIGDALLKTAAERLRACVREG 351

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D +ARL G+ F ++     +       A  + +++A   +L   ++ +  S+G A   + 
Sbjct: 352 DTVARLGGDEFAVVQTGLTDLTGATRLAGRIVEALAETFDLQGHQVMIGGSVGVAVSPND 411

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724
              S E+LK A++A+Y AK  G      F  +       R  ++ DL +A+   +  L Y
Sbjct: 412 GSDSDELLKKADMALYRAKADGRGTFHFFERAMDEALQARRALELDLRVALAEGQFELYY 471

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P+  L  + ++G EAL++W+HP  G +S  +F+ IAEE+ +I  +  ++L    R+   
Sbjct: 472 QPLFSLGADRVMGCEALLRWNHPTRGMVSPGDFIPIAEEIGLINPLGEWVLREACREASG 531

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W +      + + +N++     D  L   + + ++ +    SR++L  +ESV++ +   +
Sbjct: 532 WPEH-----VRLAVNLSPAQFRDKHLVGIVVSALAASGLPASRLELEITESVLLQDSVGN 586

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
             +L  L+ +G+ +++DDFGT  S LSYL   PFD +K + + +         +AI++++
Sbjct: 587 MSILHDLKALGVRISMDDFGTGYSSLSYLRSFPFDKIKIDQTFVRDILDDADALAIIKAV 646

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  ++  T  A+ +     + EL R GC  IQ   ++ P     I  +L
Sbjct: 647 LDLGASLGITTTAEGVESVEQLDELRRQGCGEIQGYFISRPKPAAEIAAML 697


>gi|302523204|ref|ZP_07275546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. SPB78]
 gi|318061390|ref|ZP_07980111.1| hypothetical protein SSA3_25836 [Streptomyces sp. SA3_actG]
 gi|318078186|ref|ZP_07985518.1| hypothetical protein SSA3_16060 [Streptomyces sp. SA3_actF]
 gi|302432099|gb|EFL03915.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. SPB78]
          Length = 719

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 252/581 (43%), Gaps = 17/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  + A     + +     R      G+   +    +    V     +A + G   
Sbjct: 137 EAISRAALGARAAVERALHVSEARFRAVFEGAALGISIAGMDGVIVEANDALAGMFGGLV 196

Query: 443 GSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           GS+ G  +R W    H +D      + +  V   R   Q E      D    W  + +  
Sbjct: 197 GSLRGTNVREWA---HPDDSPTVWRLYEELVKGTREYFQAEKPFYRHDGTVLWTNLTVSL 253

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +  G  L  + +  D TE++     +   A  D LTG+PNR  F +RL   L      
Sbjct: 254 LRDDQGRPLYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLDKAL---QAG 310

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620
           +N R  +  +D+D +K +ND LG   GD +LV +  R+        +I+AR+ G+ F  +
Sbjct: 311 ENNRFGLCYLDLDGFKTVNDSLGHDAGDRLLVEVADRLQGCAGGAGEIVARIGGDEFVAL 370

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAEL 679
                   ++ + A  M +++A P+ +  RE+TV  SIG            +E+L++A++
Sbjct: 371 TTGPRAREEVHELAGRMMQALATPVRVDGRELTVRGSIGIVEGPGGGKRGPAEVLRSADI 430

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            MY AK  GGN  E     +         +   L  A+E  E ++ Y P++ L D  + G
Sbjct: 431 TMYRAKAAGGNRYEVADPEADARAITRHGLTTALPAALERGEFFIEYQPLVDLGDGTVHG 490

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFI 796
            EAL++W HP+ G IS   F+ +AE   +I  +  ++L+  AR    W+++   P P+ +
Sbjct: 491 AEALVRWSHPQHGTISPDRFIPLAEHTGLIVPLGRWVLDESARQARLWQEERGGPAPLRV 550

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L    L      ++ +T   P  + L  +ES ++G  E     L RL ++G+
Sbjct: 551 NVNLSPCQLQHPRLVADTVEILERTGLPPGALCLEVTESALIGADEDLLKPLRRLAEMGV 610

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911
            + LDDFGT  S L+ L  +P   +K + +   G          + I+  I+ +A +++ 
Sbjct: 611 DIALDDFGTGYSNLANLRRLPVSVLKLDRAFTRGMQQFPADPVDLKIVEGIVALAHSLDL 670

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +  + +       +L  +GCD  Q  + A P     + +L
Sbjct: 671 AVTVEGVETSAQADQLRELGCDTAQGWYYARPGPAARVREL 711


>gi|71733454|ref|YP_272403.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71554007|gb|AAZ33218.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 642

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 152/623 (24%), Positives = 285/623 (45%), Gaps = 17/623 (2%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATG 394
           +  + + +      + L   I +       Q       VL+  ++ F     ++ ++   
Sbjct: 14  LYGLLSILWFVTCDLLLPFFIKEPARLAFWQLMAGYSWVLLSAVMIFIARDRLRSLIGGD 73

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
              Q   +D +R  LA      + + V   D     V        I G  +  + G    
Sbjct: 74  ALFQRQQADYDRLRLAEAVFDSTREGVLVSDAQGHIVHVNRAFVDITGYQAEEVLGLNPS 133

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H      ++ +  S +    G+   E   R    + +     IR +   +G   
Sbjct: 134 KFKSGRH--GPKFYKQMYHSIISE--GQWSGEIWNRRKSGEIYPQWQTIRSVMGDDGQPR 189

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + +DIT  K+S + +      D LT +PNR    DR++  L  +         +++
Sbjct: 190 HFVAVFSDITAIKRSEQELAQLIHFDGLTDLPNRLLLTDRISQTLTSARASKRG-CALLL 248

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  VGDDVL ++  R+  +      LAR  G+ F +++ + +  ++ 
Sbjct: 249 IDLDHFKNINDSLGHNVGDDVLRAVAERLKSVSGNEMTLARPGGDEFALLIKNCSQLVQA 308

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +  ++  P  +   ++ VTASIG + +    +T+ ++L+NA+ A++ AK  G  
Sbjct: 309 AALAQQVINALKAPFAIAAHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKGDGRE 368

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +     +    RV +  +L  AVE  +L + Y P+  L+   I G+EAL++W HP+
Sbjct: 369 CYALYTEELTAHAQQRVQLAYELRQAVELEQLRVFYQPVHDLVTRRIRGVEALVRWQHPE 428

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  EF+ IAE+  +I  I+ ++L+     + +W  +  +P  F+ +N++S+     
Sbjct: 429 RGMVSPGEFIPIAEQSGLIADIDAWVLKTACLQMKAWLAE-GVPVEFVAVNVSSRLFNHG 487

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +   + +T   P+ ++L  +ES VM +PE++   L RLR++G+SL +DDFGT  S
Sbjct: 488 DLDRRVAQALHETGLEPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYS 547

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  +P   +K +   + G    +  IAI+R++I +A ++   ++A+ I        
Sbjct: 548 SLLRLKRMPVQKLKIDQGFVAGLPGDDDDIAIVRAVIALAGSLGMRVLAEGIEHANQAAF 607

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L    C   Q    A P+   +I
Sbjct: 608 LLGNSCQLGQGYWFARPMVAQAI 630


>gi|212637004|ref|YP_002313529.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558488|gb|ACJ30942.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 845

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 137/569 (24%), Positives = 252/569 (44%), Gaps = 12/569 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IR 450
                 +      E  S     S + V   D+    +        I G     + G   R
Sbjct: 278 RNISTHKAAQDQLELASRVFENSVEGVLITDVDGIIIDAHGAYTEITGFEKSELIGQNPR 337

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H  D+  F ++  S +    G+   E   R  +      ++ I  +      I 
Sbjct: 338 VFNSGRH--DKAFFESLWQSLL--GSGKWHGEIWNRRKNGAVFPQLLTISAVYGDEHQIR 393

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ +  D++ QKK+   +   AF D LT +PNR +   RL   + L+   +  +  V+ 
Sbjct: 394 YFVAVFADLSTQKKNEAELAHLAFHDPLTKLPNRMAVTSRLEQEIRLANRSE-YQLGVIY 452

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K++N+  G  +GD+VLV L++R+   +     +ARL G+ F +IL +  +S  +
Sbjct: 453 IDVDLFKQVNESFGHVIGDEVLVELSQRLTLAIGSLATIARLGGDEFAVILPNIESSDML 512

Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                 + +    P  L E   + +TAS+G A +      SS +L NA+ AM+ AK  G 
Sbjct: 513 LLRLSKLPQIFERPFMLGEHAPVRLTASMGVALYPQDGRDSSTLLVNADAAMHRAKQDGR 572

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+   +  S        + ++  L  A+     YLVY P +    + + G EAL++W+ P
Sbjct: 573 NNYAFYTQSLTYESVAHLKLQSALHDALAQEAFYLVYQPKVDCKTKALSGFEALLRWNDP 632

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS + F+ +AE++ +I+ I  ++L++     +SW  +       I +N+A   L  
Sbjct: 633 LLGSISPAIFIPVAEKIGLIQEIGRWVLQQACEQGVSWLAEGKDFG-RIAVNVAGPQLQR 691

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                 +  ++  T    +R++L  +ES +M +PE     L  L  +GI L++DDFGT  
Sbjct: 692 RTFVNEVADVLKATGLPANRLELEVTESCMMSDPESVGRDLILLADMGIVLSIDDFGTGY 751

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P + +K +   +          AI +++I + +++   +IA+ +       
Sbjct: 752 SSLNYLKKLPINKLKIDQGFVRDIPEDANNTAIAKAVIALGRSLNLKVIAEGVETPEQAM 811

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                GCD  Q    + P   + +    +
Sbjct: 812 FFADNGCDEAQGYLFSKPKAASELEHFFE 840



 Score = 44.2 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 32/191 (16%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               + +    ++    +    + VW  D     +     +     L+   +        
Sbjct: 160 RTADKPLNVSLQQF---IDAMKEHVWMKDAEGRYIIVNQSVEMAWELSREQILEHTDE-- 214

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                     F       +         E +     N   W+     P+ +  G++   I
Sbjct: 215 ELFTPQLAQQFIEGDKESITKGVQVTAGECKGLDIGNVESWLETTKVPVVSEAGELSGII 274

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI+ +I+  K         A QD L  + +R  F + +                V++ D+
Sbjct: 275 GISRNISTHK---------AAQDQL-ELASRV-FENSVE--------------GVLITDV 309

Query: 574 DKYKKINDVLG 584
           D    I D  G
Sbjct: 310 DG--IIIDAHG 318


>gi|153001290|ref|YP_001366971.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151365908|gb|ABS08908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS185]
          Length = 1419

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 859  QKEEQLKLFEKAIENISEGMFILDGEYRFVEVNEACCKISLRNRTDFIGNVLTF--DLYP 916

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 F T + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 917  E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ +++           +MV+D+D +K+
Sbjct: 973  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  +  RI  LL     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKGSDISASAAIANRII 1087

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            + +     +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLYPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   +++    + Y P + L   +I G+EAL++ +HP  G I  ++
Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1207

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1266

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1386

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +       LL+E
Sbjct: 1387 IQGYIFSKAIKETEFTLLLQE 1407



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 2/154 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           V+I I I F +++ +L      + I    ER  L++ GSGD +WDWDI    +  +    
Sbjct: 711 VVITIFISFVIVKAILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             L            +    IH  D++  R  L+          +  +RV+  D+ + W+
Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
           + R + +  +   + LR  G   +I++ K+  E 
Sbjct: 830 LDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 863


>gi|47569773|ref|ZP_00240445.1| sensory box protein [Bacillus cereus G9241]
 gi|47553569|gb|EAL11948.1| sensory box protein [Bacillus cereus G9241]
          Length = 937

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 185/843 (21%), Positives = 347/843 (41%), Gaps = 73/843 (8%)

Query: 180 FYKDTVNSFTLYRGIIIGVASL---LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
             K       L+  +++        + I L +  +     ++    A+ + ++ YI +  
Sbjct: 99  AIKKMKRGDKLFWVLVLCTCLCGLTMEITLFLHSLSIYDQVIFSYKALPFFIVQYILLFS 158

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY---------LHWNRWHAKVGYITF 287
           GF  K +   S   L   +   I +    I F   +         L  + W     +I  
Sbjct: 159 GFAIKFIKHYSIRGLAQFSFDSIFIIIMNIYFTLTFILDVSSFFMLTTDTWILIGYFIAQ 218

Query: 288 SGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           S +    I L+    Y     + I   T+  +  Y   F +  G+K       LI    +
Sbjct: 219 SLVIYAVISLYRREQYSSSRISLIIGFTIILVYGYIHMFQLNAGIKPSSEVSYLIHTASI 278

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----------------------ILIGF 384
           + I    +   + K   ++          V  +                      +LIG 
Sbjct: 279 LLIGLSSILYILDKPTQHETKTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGL 338

Query: 385 TVIQHVLATGYF---------------------------SQGIFSDGERQSLAVLGSGDI 417
            +   +L                                +  +    +R +       D 
Sbjct: 339 VLSLILLFLRQLYMWKDNQALIDTYEQLTTQLEGEVEEGASALSKSEQRYTSLFEDHPDA 398

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  ++      +     ++    +        + L +I   D D  +  L      R  
Sbjct: 399 VFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLHFIDSKDHDLLKKALQLTKEGRPQ 456

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L  E R +  +  ++++ I + P    N +++   GIA DIT   +  + +   AF D 
Sbjct: 457 TL--EVRTKEKEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDA 513

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR+ F   L  IL+ + T  N    VM +D+D++KKIND LG  VGD +L+ + +
Sbjct: 514 LTGLPNRRKFEKDLKNILNTAQTSAN-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAK 572

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L+  D++AR  G+ F I+L    +    A  A  +   +  P  +   E+++T S
Sbjct: 573 RLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIAEQILNILNKPFFIQGEELSITPS 632

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
           IG A +       +E++KNA++AMY AK  G N    F       +++   ++ +L  A+
Sbjct: 633 IGIAMYPDYGTDVTELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEIQFLEGELAKAL 692

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE   I  +  ++L
Sbjct: 693 QQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWIL 752

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                +   W +Q     + + +N++       +L   +  ++ +T   P  + +  +ES
Sbjct: 753 RTACLEAKRWHNQ-GFSQLKVGVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITES 811

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           + +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K     + G   + 
Sbjct: 812 IAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSP 871

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ SII ++K +   +IA+ +  E   K L    CD+IQ   ++ P+    + +LL
Sbjct: 872 LEEAIISSIITLSKELNLEVIAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLL 931

Query: 954 KER 956
            ++
Sbjct: 932 HKK 934


>gi|78222002|ref|YP_383749.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
 gi|78193257|gb|ABB31024.1| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens
           GS-15]
          Length = 736

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/606 (23%), Positives = 268/606 (44%), Gaps = 31/606 (5%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQH--VLATGYFSQGIFSDGERQSLAVLGSGDIV----W 419
           +++ ALV    L+V  +GF +++   + A     Q +     +         + +     
Sbjct: 136 LLETALVAACALLVGGLGFVMLRTIPLRAVNQAHQSLAESEAKYRSLYDSMKEGMALHRI 195

Query: 420 DWDIVRD-----RVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVG 473
             D+  +      V   P  A+ILG+   ++ G     +                   V 
Sbjct: 196 ISDMEGNSVGFEVVDVNPSFASILGMEKSAIIGMGGEEFFSG-------ALMARFAEIVR 248

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                    F +   +         +      +G    +  +  D TE+KKS E I   A
Sbjct: 249 GAESGEALMFELPLPEKNLF---FDVSVFYPDSG---LFATLFEDTTERKKSDEQIQRLA 302

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR  FLDRL   L  +  D+  +  +  ID+D +K IND LG A GD +L 
Sbjct: 303 YYDTLTALPNRTLFLDRLEQALAGAIRDNG-KFALFFIDLDGFKVINDNLGHAQGDLLLT 361

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +++R+ E ++  D LARL G+ F +++         A  A  + + I+ P  +  R + 
Sbjct: 362 MVSQRLREGIRRKDTLARLGGDEFMVLISYAGEERNAAHLAQHLLERISPPYEIGSRVVY 421

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVSSFRSDRVMIKEDL 711
            +ASIG + +      +  +L+ A++AMY AK  G    H  S  ++    +R+ ++  L
Sbjct: 422 TSASIGISIFPDDGRDAETLLRCADMAMYAAKEAGRNGYHFHSPEMNRKAHERMELEMSL 481

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  E +L + PII +  + +VG EAL++W HP  G +    F+ +AE   +I  + 
Sbjct: 482 RQALERDEFFLEFQPIINVGGDCLVGAEALVRWQHPAQGRVMPGTFIPLAESSGLIIPLG 541

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +    +  WRD    PP+ + +NI+ +          +  ++ +T      ++  
Sbjct: 542 EWVLRKACEKMKEWRDAGL-PPVKLSVNISGRQFEQRNFTALVDEVLKETGVDARALQFE 600

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+ +M +   +   L +L+++ + + +DDFGT  S L+YL   P D +K + S +   
Sbjct: 601 LTETSLMKDAGATVSALYKLKELDLRIVVDDFGTGYSSLAYLKNFPIDHIKIDRSFVMDI 660

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  +I+ +I+ MA  +   ++A+ +        L  +GC  +Q      PL     
Sbjct: 661 CDDPDDRSIVEAIVAMANKLNLDVVAEGVETREQRDLLLDLGCHEMQGFLFHRPLPEEKF 720

Query: 950 LKLLKE 955
           ++LL++
Sbjct: 721 VELLRD 726


>gi|301052276|ref|YP_003790487.1| sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|300374445|gb|ADK03349.1| sensory box, GGDEF family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 569

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPSEFIPIAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|330969162|gb|EGH69228.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 628

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 148/597 (24%), Positives = 274/597 (45%), Gaps = 46/597 (7%)

Query: 400 IFSDGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIR 450
           + +  ER  L    V+ + D +        D+     V   P    I G     + G   
Sbjct: 31  LVTSFERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTP 90

Query: 451 NWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             L      D       I+   + + R  ++ E      D    W+ + I P++N  G  
Sbjct: 91  RILQC---EDTSRATLDIIREALSHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWF 146

Query: 510 LRYIGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIP 542
             ++ +  DITE+K                           +  E +   AF D LT + 
Sbjct: 147 THWVSVQRDITERKESQQLAQRARLEWEEKLALQSRLEERERMSEELTYIAFHDELTSLF 206

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR   ++ LTT  +   +    R TV+ +D+D +K +ND +G   GD +L  +  R+   
Sbjct: 207 NRAYLMNELTTAFETRKSRYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQTC 265

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  S
Sbjct: 266 VRSNDVLARIGGDEFAILLMGKDQPETAVKMAERIVSQLNTAIQIEGQDIFISCSIGIVS 325

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720
              S     E+L++A++AMY AK +G      F  S      D +MI+  L  A+E+ + 
Sbjct: 326 AGESHTKPEELLRDADVAMYSAKKQGRGRWSIFNTSMREAAIDTLMIQNALRQALEDKDF 385

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y PI     E +VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   
Sbjct: 386 LVFYQPIYSGNCEHLVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHKACS 445

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           ++ +WR + +   + + +N++ K+L      + +  +I+ T    +++++  +ESV +  
Sbjct: 446 EVQAWRKEFSHLDLRLNVNVSGKELSHPGFVDRVTRIITSTGLPATQLQIEVTESVFLYQ 505

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898
           P+    +L ++R++G+ + LDDFGT  S L Y+   P D VK + S ++     E+  AI
Sbjct: 506 PDAIAEILRQIRQLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAI 565

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + SI+ + + +   I A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 566 VSSILSLGRALNLDITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 622


>gi|42784524|ref|NP_981771.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42740456|gb|AAS44379.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 892

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 176/823 (21%), Positives = 338/823 (41%), Gaps = 76/823 (9%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
           +   L +     Y      ++    A+ + ++ YI +  GF  K +   S   L   +  
Sbjct: 79  MEITLFLHSLSIY----DQVIFSYTALPFFIVQYILLFSGFAIKFIKHYSIRGLAQFSFD 134

Query: 258 EIALSSSLIIFLFMYLHWNRWHAKV----GYITFSGIACIAILFCMS-------FYYPMV 306
            I +    I F   ++  +R   ++     ++        +++            Y    
Sbjct: 135 SIFIIIMNIYFTLTFI-LDRSSFRMLTTDHWVLIGYFIAQSLVIYAVISLYRREQYSASR 193

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            + I   T+  +  Y   F +  GMK       LI    ++ I    +   + K + ++ 
Sbjct: 194 ISLIIGFTIILVYGYIHLFQLNAGMKTSSEVSYLIHTASILLIGLSSILYILDKPMQHET 253

Query: 367 IQPALVGGLVLIV----------------------ILIGFTVIQHVLATGYF-------- 396
                    V  +                      +LIG  +   +L             
Sbjct: 254 KTKYYRFDYVRFILPYFSIIITFSFIIFQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQA 313

Query: 397 -------------------SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
                              +  +    +R         D V+  ++      +     ++
Sbjct: 314 LIDTYEQLTTQLEDKVEEGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESL 373

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
               +        + L +I   D D  +  L      R   L  E R +  +  ++++ I
Sbjct: 374 F--TAYYCEVESYSLLHFIDSKDHDLLKKALQLTKKGRPQTL--EVRTKEKEGYYYYLHI 429

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            + P    N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ 
Sbjct: 430 TLIPTF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNT 488

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           + T  +    VM +D+D++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F
Sbjct: 489 AQTSAS-DVAVMFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEF 547

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L    +    A  A  +   +  P  +   E+++T SIG A +       + ++KNA
Sbjct: 548 TILLPDMYSEKSAAFIAEQILNILNKPFFIQGEELSITPSIGIAMYPDYGTDVTALMKNA 607

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I
Sbjct: 608 DMAMYRAKANGKNRFVFFSKEISIAQNEIQFLEGELAKALQQNEFFLEYQPQVSTKTKQI 667

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EAL++W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + 
Sbjct: 668 IGFEALLRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLK 726

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++        L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +G
Sbjct: 727 VGVNLSVVQFNHANLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLG 786

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           I +++DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +
Sbjct: 787 IQISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEV 846

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           IA+ +  E   K L    CD+IQ   ++ P+    + +LL ++
Sbjct: 847 IAEGVETEEQWKFLYEQNCDHIQGFFISKPVSSKDVWRLLHKK 889


>gi|302186038|ref|ZP_07262711.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 748

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 156/703 (22%), Positives = 297/703 (42%), Gaps = 62/703 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V                   +IY  ++G+              +  + 
Sbjct: 61  AWLRMISSYGDVVLVGKDSPADTMETNRSGSTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL                         +  + +  ER  L    
Sbjct: 111 LSNSDDAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L      D    
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC---EDTSRA 221

Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++   +   R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K
Sbjct: 222 TLDVIREALSQWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERK 280

Query: 524 ---------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                                      +  E +   AF D LT + NR   ++ LTT  +
Sbjct: 281 ESQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFE 340

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
           +       R TV+ +D+D +K +ND +G   GD +L ++  R+   ++  D+LAR+ G+ 
Sbjct: 341 IRDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDE 399

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   S     E+L++
Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLHTAIQIEGQDIFISCSIGIVTAGESHTKPEELLRD 459

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK +G      F  S      D ++I+  L  A+E+ +  + Y PI     E 
Sbjct: 460 ADVAMYSAKKQGRGRWSIFNSSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGNCEH 519

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR + +   +
Sbjct: 520 LVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDL 579

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ K+L      + +  +I+ T     ++++  +ESV +  P+    +L ++R++
Sbjct: 580 RLNVNVSGKELSHPGFVDQVTRIIAATGLPADQLQIEVTESVFLYQPDAIAEVLRQIRQL 639

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G+ + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + +   
Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLD 699

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 700 ITAEGVETAEQYDLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|46203146|ref|ZP_00051986.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 579

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 218/532 (40%), Positives = 339/532 (63%), Gaps = 11/532 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +LIV+LIGFTV+QH  A G  S  + SD ER++LA+ G+GDIV+DWD+  DRV   P+I 
Sbjct: 1   MLIVMLIGFTVMQHAFAGGGLSHSLVSDTERRALALTGAGDIVFDWDVPGDRVFAGPEIE 60

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             LGL  G++ GP  NWL  +H  D + +   LD+ +  RRGR+ ++FR+R+AD  + W 
Sbjct: 61  AQLGLKRGTLEGPAANWLGLLHPFDVERYSAALDTVIEERRGRIVHDFRLRSADGPYAWY 120

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            ++ RP+  S+G+++R +G  +D+TE K + E +L +A  D+LTG+PNR+ F DRL   L
Sbjct: 121 RLKARPVIGSDGEVIRIVGTISDVTEAKTAEERLLHDAVHDSLTGLPNRELFHDRLEAAL 180

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            L++ D  L+P V+ +DID++K IND +G++ GD +L++L+RR+G LL+  D LAR++G+
Sbjct: 181 ALASQDPRLKPAVIALDIDRFKTINDAIGLSAGDSILLTLSRRLGRLLRPQDTLARVAGD 240

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-------- 667
            F +IL+SE    +I  FA  +R++IA P+   +RE+ +T SIG A   ++         
Sbjct: 241 AFAVILLSEREPDRILAFAEMIRRAIATPVTYADREVFLTVSIGIALHEANAGGQGAGQQ 300

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYH 725
               E+ KNAE+AM  AK  GG+ +E FR +    RSDR+M++ DL  A+E +E+ +++ 
Sbjct: 301 PRRDEVFKNAEMAMIQAKRGGGDRIEVFRANMRLERSDRLMLEADLRKALERNEIKVLFQ 360

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+RL D  + G E L++WDHPK G I  S FM +AEE  +I  +  F +ER A ++ +W
Sbjct: 361 PIVRLEDRTVAGFETLLRWDHPKLGRIPPSTFMPVAEETGVIVQLGNFAIERTALELAAW 420

Query: 786 RDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +   +  PPIF  +N++S+ LL ++L   ++ +I++T   P  +KL  +E +VM NPE +
Sbjct: 421 QRSLDVEPPIFASVNVSSRQLLRHDLLHDVKTVIARTGVLPGSLKLEMAEGLVMENPEYA 480

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
             +L R+  +G  L LDDFGT  S LSYL   PFDT+K + + +    +   
Sbjct: 481 AQMLARIHDLGAGLILDDFGTGYSALSYLQRFPFDTIKIDQTFVRQMGQDAA 532


>gi|83593140|ref|YP_426892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576054|gb|ABC22605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 886

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 134/536 (25%), Positives = 243/536 (45%), Gaps = 10/536 (1%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D              + G     + G +   L                +    +    +
Sbjct: 335 TDGEGRVEWVNEAYHLLSGYERDQIIGTLPAVLAG-PSAANPTAIEAWPTLRAGQ--VWR 391

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E      D + + +   I P+ +++G +   + +  D+T +KK+ E I   +  D LT 
Sbjct: 392 GEIHETHRDGRTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKAEERIRYLSNYDTLTR 451

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  F DRL   +  +         VM ID+D++  +ND LG A GD +L+++  RI 
Sbjct: 452 LPNRVLFRDRLYQAVVQARRGHGG-LAVMFIDLDQFSLVNDTLGHAAGDHLLMTIASRIN 510

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
              +  D +AR+ G+ F +I  +  ++   A  A  +   I  P++L  RE+ + A++G 
Sbjct: 511 AAAEEADTVARVGGDEFALIQTALTSADSAASLARRLIDVIRTPVDLGGREVVIGANVGI 570

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS 718
           A +         ++KNA++AMY A   G +    F        + R+ ++EDL  A+++ 
Sbjct: 571 AIYPQDGTDPDNLMKNADMAMYRAVKSGDDSCCFFSNEMNAEAAVRLSLEEDLRRALDSG 630

Query: 719 -ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            +L+L Y     +     VG EAL +W HP  G I  + F+ +AE+  +I A+  ++L  
Sbjct: 631 DQLFLHYQLQFCIESGRPVGAEALARWTHPTLGAIPPTRFIPVAEDSGLILALGDWVLGT 690

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
              +   WR       + I +N+++       L E +  L+++    P  ++L  +ES++
Sbjct: 691 ALAEYARWRAAGCGR-LTIAVNMSAVQFRQKGLVERVTDLLAQHGVPPEDLELELTESML 749

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--R 895
           M + +++   L  L + GI L++DDFGT  S L YL     D +K + S +   TE    
Sbjct: 750 MQDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKLKVDQSFVRDVTEDGND 809

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             I R+II +  ++   +IA+ +     +  L R GCD +Q   +A P    ++ +
Sbjct: 810 AVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQGYLMAYPEPGETVAR 865


>gi|187927608|ref|YP_001898095.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|187724498|gb|ACD25663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12J]
          Length = 917

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 253/577 (43%), Gaps = 13/577 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +   + ++ +    ER  LAV    + +         +   P    IL   S S  G  
Sbjct: 337 AVQKAHIARDLRESEERYRLAVDNLTEGIVVQTADGTILACNPSARRILRAGSVSPVGTS 396

Query: 450 R-NWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +      D              +   R  L     +   D    W+   + P+   
Sbjct: 397 HLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENVLPIVRP 456

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDD 562
            +      +   NDI   + + + +   A +D LTG+ NR  F  R+  +++ +    ++
Sbjct: 457 GDNTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANE 516

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L 
Sbjct: 517 GHQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLD 576

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +  +    A  +  SIA P +    E  + ASIG A +      ++ +L+ A+ AMY
Sbjct: 577 NVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMY 636

Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +AK  G N    +          R  ++  L  A+   EL L + PI+     +IVG E 
Sbjct: 637 NAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQPIVDATSMDIVGAEV 696

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W   + G +S +EF+ +AE+  +I  I  ++L +  R    WR    MP  F+ +N+
Sbjct: 697 LLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAHWRA-TCMPEFFVAVNL 755

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +      L   +   +++     S +++  +E ++M +      +L  L  +GI +++
Sbjct: 756 SPRQFG-EGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAVMPMLDALTALGIRISI 814

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +
Sbjct: 815 DDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGV 874

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 + L   GCD +Q      P+   +    L+ 
Sbjct: 875 ETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRR 911



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458
           +    +R    V    D ++        V        + G   +  + G   +   ++H 
Sbjct: 35  LPLADDRYEALVRQMPDALYIV-ADDIIVFVNEAGVRLFGAQTARDIVGHELD--EFVHD 91

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           N     R   +  V +  G    E  +   D     + +   P+    G       +A D
Sbjct: 92  NSMHLARQRREWMVSHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAIQVVARD 149

Query: 519 ITEQKKSLEG-ILCNAFQDNL 538
           IT++K++ +      A    L
Sbjct: 150 ITQRKQAEQALRESEANYRAL 170


>gi|123443785|ref|YP_001007756.1| hypothetical protein YE3597 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090746|emb|CAL13623.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 832

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 137/572 (23%), Positives = 266/572 (46%), Gaps = 17/572 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +            + +  ER       + D +W+ D        +    TI GL+   
Sbjct: 264 RAMAEARTADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGLSVEH 323

Query: 445 MHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             G   + L      D    R+ L  + +   R  LQ  +   +A        I  +P+ 
Sbjct: 324 WLGRNLDSLLNC---DVIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYAKPII 378

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++ +I  + G A+DIT + ++ E I   +  D LTG+PNR    + L   L   A   +
Sbjct: 379 KNDQNI-GFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPH 437

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +I+  
Sbjct: 438 P-LVILNVDLDKFKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISG 496

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +++ +I      +   I  P  + E++I ++ASIG A      + + E+L+ A++AMY 
Sbjct: 497 LSSTKEIEQLCARVIARIESPYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYE 556

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK+ G N    +             ++  L  A++++E  L Y P  R+   ++ G EAL
Sbjct: 557 AKNSGSNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFSLYYQPRYRIKGTQLTGAEAL 616

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G +   +F+ +AEE  +I AI+ + + +  +D  +W        + I +NI+
Sbjct: 617 VRWNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIISVNIS 671

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +     L E ++ ++  +     R++L  +E +++ + + +   +  L+ +G+ L++D
Sbjct: 672 AIEFRSQRLIERVRQVLLLSGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMD 731

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ A+ + 
Sbjct: 732 DFGTGYSSLNYLRRFPFDGLKIDKSFIDELTQSHEGRSIVEGIINLGHALSMTVTAEGVE 791

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++ L  + CD  Q   +  P+  + +L 
Sbjct: 792 TAEQLEHLQTLMCDEAQGYLLGKPMKLSELLN 823


>gi|188535180|ref|YP_001908977.1| Putative sensory box protein [Erwinia tasmaniensis Et1/99]
 gi|188030222|emb|CAO98108.1| Putative sensory box protein [Erwinia tasmaniensis Et1/99]
          Length = 820

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/567 (25%), Positives = 250/567 (44%), Gaps = 16/567 (2%)

Query: 387 IQHVLATGYFSQGIFSDG-ERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGS 444
           I H       +        +     V      V   D +  + +        +LG     
Sbjct: 258 IIHARDLAERNSEKMKSLSQFLDSIVAHIPSCVIVEDAVSGEILLVNSQAERLLGGKPHE 317

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
             G     L  +       F   L      + G  + E R++ +      +      +  
Sbjct: 318 FIGKTS--LNSMSAEMSAYFMQ-LSDATQRKGGVQRNERRLKTSGGDRI-ISCSASIVRG 373

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      + IA+D+T+Q+ + E I   A  DNLT +PNR  F   LT  L   +    L
Sbjct: 374 KDARHSYILLIADDVTDQRAADERIHHMAHHDNLTSLPNRVLFNQYLTRALREDSAAQRL 433

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+ +D+D +K +ND LG  +GD +L S+  R+  +L+  D LAR  G+ F I+L + 
Sbjct: 434 T-AVLGLDLDNFKNVNDALGHQIGDVLLCSVAVRLRGVLRDRDTLARNGGDEFSIVLPAL 492

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S +    A  + ++I  P  +    +++  S+G         +   +L+ A++A+Y A
Sbjct: 493 SHSAEAETVARTLIETIRPPFIVEGHSLSIGLSVGITIAQDDTSSPDYLLRCADMALYAA 552

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  E F        +    ++ DL  A+   +L L Y PI      EIVG EAL+
Sbjct: 553 KRNGRNRFEHFTKEMGEMAQRRRIVENDLREAITTGQLRLYYQPITNNQHCEIVGYEALM 612

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G I   +F+ IAEE  +I  +  + L    R+  SW  +       + +N++ 
Sbjct: 613 RWHHPEKGVIMPLDFIPIAEETGLIHNLGAYALYEACREAASWPGEQ-----MVAVNLSP 667

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                + L   ++  + ++  +P R+++  +ESV++ N  ++  +L  L+ +G+ + LDD
Sbjct: 668 LQFKSSALIAVVEGALKESGLAPHRLEVEITESVLLDNTMKNIDVLRDLKALGVHIALDD 727

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   PFD +K + S +    + R   AI+R+I  M+++++  I A+ +  
Sbjct: 728 FGTGYSSLSYLRSFPFDKIKIDKSFINDMQDSREALAIIRAITGMSRSLDIQITAEGVES 787

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFN 947
               + L   GC   Q  +   P    
Sbjct: 788 IEQFQRLKDEGCTLFQGYYFGRPQPSE 814



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 7/140 (5%)

Query: 397 SQGIFSDGER----QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            + +  D +R      L V    D  ++  D+    V+         G ++  + G   +
Sbjct: 123 QKRVQRDQQRRDQTFRLLVESVNDYAIYMLDLQGLVVSWNAGACRAKGYSASEIIGQ--H 180

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +  +    DR       +       GR + E           W  + I  + N +G+++ 
Sbjct: 181 FSCFYSAQDRLKNLPDTNLHRATLTGRFEDEGWRYRKSGSAFWAHVVIDAIRNDDGELIG 240

Query: 512 YIGIANDITEQKKSLEGILC 531
           +  I  D T+ ++  + I+ 
Sbjct: 241 FAKITRDCTKVREYEQQIIH 260



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           G  V+      +  + +       G     + G  R++  +    D+   +  +   V  
Sbjct: 18  GCAVYMLTPDGNVASWSRGAQHAKGYLPAEIVG--RHFSCFYSQQDQSLGQPQIGLKVAR 75

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             GR   E      D    W  + I  + + +G +L Y  I  D TEQK+        
Sbjct: 76  ESGRYATEGWRYRKDGSAFWAQVVIDAIYDDDGKLLGYAKITRDCTEQKRVQRDQQRR 133


>gi|237654500|ref|YP_002890814.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
 gi|237625747|gb|ACR02437.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
          Length = 703

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 150/629 (23%), Positives = 274/629 (43%), Gaps = 28/629 (4%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            +   M  T  ++      A       I   +    +++VL     +  +     R +  
Sbjct: 80  LMVTGMDDTASIEAAFEAGATDFVAKPISWPLLGHRVRYVLRATRAATALRMANARNAAM 139

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D +   D     V      A   G+ S  M    +                 LD 
Sbjct: 140 LDAFPDTLLRLDAADRIVELR---AAPTGVPSCCMPAVGQTLAEAYPHEVATLLAQALDE 196

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R+     +F +     +      R+  +   +G+    + +  DITE+K+    I 
Sbjct: 197 ARRSRQPS-TVDFPLACRTGRPCHQEARVSAI--DDGE---ALCLLRDITERKEYETRIH 250

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A+ D+LTG+ NR+SFL+RL   +  +  +   R  V+ +D+D++K IND LG A GD 
Sbjct: 251 HLAYFDSLTGLANRRSFLERLEREIRRALQN-KWRLAVLFLDLDRFKSINDTLGHAAGDA 309

Query: 591 VLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIADFAIAMR 638
           +L     R+  + +  DI+A            RL G+ F ++L + +        A  +R
Sbjct: 310 LLQQAAERLRAITRPGDIVAHDTDRMGTAEFARLGGDEFTVLLPTISRPDDALAIAERIR 369

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            SI  P  +  +E+ VT S+G A +      ++ ++K+A++AMY AK  G N    +   
Sbjct: 370 ASICAPFAIEGQELCVTTSVGIAVFPDDGEDAATLIKHADIAMYDAKANGRNGCRYYNPA 429

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            ++    RV ++  L  A+ + EL L+Y P + + D  I  +EAL++W  P    +   E
Sbjct: 430 LTAEAVHRVELEAGLRRALAHDELVLMYQPQVEVRDGSIATVEALVRWQTPDGRLVPPLE 489

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AEE  +I AI  ++L R   D   W+ +     + + +N++      + L + ++ 
Sbjct: 490 FIPFAEECGLIDAIGSWVLRRACHDAAQWQRRGLD--LRVAVNLSPVQFRASGLLDRIRE 547

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +     R++L  +ES +M +   +   L  LR +GI + LDDFGT  S LS L  +
Sbjct: 548 ALADSDLPAERLELEITESALMADDADTHATLAALRTLGIGIALDDFGTGYSSLSCLKRL 607

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S ++G        AI+R+I+ +A+++   I A+ +      + L  +  D 
Sbjct: 608 PLDKLKIDRSFVSGLPDDVDNHAIVRAIVALARHLGFRIAAEGVETAAQAELLGELEADS 667

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +Q    +  +    +  L   R+P  + T
Sbjct: 668 LQGYLFSRAVPAAELEALASRRWPPARGT 696


>gi|78485641|ref|YP_391566.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363927|gb|ABB41892.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 891

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 150/614 (24%), Positives = 280/614 (45%), Gaps = 29/614 (4%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-----------QSLAVL 412
             +   A +G L  ++I       +       F+Q +     +               + 
Sbjct: 279 FSLYFYAAIGYLFFLIIYFYQLNKREKTQITEFNQRLTESVHQKTRQLTHQKYFLQNVID 338

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G  D V  +D              ++GL S S            + +  +     L S  
Sbjct: 339 GVSDSVVVYDKNLSITMKNKAAEQLIGLTSSSKQYSHGVNENNQNHDYLETVIKCLKSAK 398

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +             +    +    + P+ + +G +   I + ++IT      E +   
Sbjct: 399 PEKT-----VHHFIDQNQTSRYFEFTVTPLVDGSGQLNSVIQLGHEITNYLDIQEQLQQQ 453

Query: 533 -------AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A+ D LT +PNR  FLDRLT  +  +  + + +  ++ ID+D++K+IND  G 
Sbjct: 454 KNDLDFIAYHDPLTDLPNRILFLDRLTQAIHQAQRNHD-KVALLFIDLDRFKEINDSFGH 512

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD VL+   +R+ + ++  D +ARL G+ F I++     +  I +    + K+++ PI
Sbjct: 513 ASGDLVLIECGKRLKKAIREIDTVARLGGDEFTILIDELKTNNVIINVVKKIIKTLSDPI 572

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + E    +TASIG + + +    ++++L+NA+ AMY AK  G N    +         +
Sbjct: 573 FVNENIFHITASIGISIFPNDGTDANQLLQNADAAMYQAKEDGKNTYHFYTKEMTEQAYN 632

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R++++ +L  A++N +  L Y P + +   +IVG EAL++W+H + G I    F+ +AEE
Sbjct: 633 RLLMENNLRDALDNQQFELYYQPQVDITTNKIVGFEALVRWNHEQKGIIPPDHFIPLAEE 692

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   ++   ++ I  W          I IN+++K L D+     +   ++K   
Sbjct: 693 TGLIIPLGKQIIAMASQTISEWHQANL-TNARIAINVSAKQLRDSRFFHNLNTALNKNNC 751

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  I++  +ES VM NPE +  LL +LR+ GI++++DDFGT  S L+YL  +P   VK 
Sbjct: 752 QPDWIEIEITESSVMQNPELAIKLLSKLRRKGITISIDDFGTGYSSLAYLKKLPITKVKI 811

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++     +    I ++II M++++   IIA+ I  +     + + GC  IQ  + +
Sbjct: 812 DRSFVSNLPQDKDDAEITKAIISMSQSLNLDIIAEGIETQEQQNFVLQEGCKLIQGYYYS 871

Query: 942 SPLGFNSILKLLKE 955
            PL   ++   L+ 
Sbjct: 872 RPLTKKAMTAKLES 885


>gi|86751742|ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86574770|gb|ABD09327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 904

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 154/624 (24%), Positives = 272/624 (43%), Gaps = 20/624 (3%)

Query: 340 LIPAWILIFIWFIGLW--MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
              A + I +             R    ++  A     +++ +++   + Q         
Sbjct: 288 YSLASLPIVVVTATTTDEALAAWRKQTRLLISAATVSALVVSVILLLIIRQLGKQHQATQ 347

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI- 456
             +  D +R + A+      +  +D  +  V        + GL+   +  P  ++   I 
Sbjct: 348 ARLALDKQRLNTAINNMSQGLLLFDAAQRLVVCNQRYIQMYGLSP-EIVKPGCSFRDIIA 406

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H + R +F+  +D + G     +  E       +    + I   P+         ++   
Sbjct: 407 HRHARGSFKGDVDEYCGRIVQAVIVEKTSAVHGSHDRSIQISSVPVPGG-----GWVATH 461

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE+ +  E I   A  D+LT +PNR  F  RL   L       +   T++ IDID++
Sbjct: 462 EDITERIRDSEKIAYLAHYDSLTDLPNRSLFRQRLERELH--PGRGSAACTLLYIDIDEF 519

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  +GD++L  +  R+ E +   D +ARL G+ F +I  S  +S +    A  
Sbjct: 520 KSINDTLGHPIGDELLKQVAVRLRECVGASDFVARLGGDEFAVIATSAADSDQATALAER 579

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + ++I  P + L   ++  ASIG A          +++KNA+LAMY AK  G      F 
Sbjct: 580 ILQTIRAPYHCLGHHLSTDASIGIAIAPGDGEDIDQLIKNADLAMYSAKAGGRRTFRFFE 639

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +       R  ++ DL  A+ +    + Y PI+ L  +EI G EAL++W HP  G IS 
Sbjct: 640 PAMDAIARARRELEFDLRTAIADGGFEIHYQPIVDLRSDEITGCEALLRWRHPTRGMISP 699

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ +AE+  +I  I  + L     + + W        I + +NI+        L   +
Sbjct: 700 AEFIPVAEDTGLINEIGGWTLAAACAEAVQW-----EQNITLAVNISPVQFRQPTLALLV 754

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++  T     R++L  +E+V++ + + +   L  LR +G+ ++LDDFGT  S LSYL 
Sbjct: 755 ASVLGSTGLPAQRLELEVTEAVLIHDDDAALTTLNLLRALGVRISLDDFGTGYSSLSYLQ 814

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + + +      E   AI+ +++ +A +   T  A+ +        L  +GC
Sbjct: 815 RFPFDKIKIDRAFVENIDTTEGSTAIIEAVVNIAASRSMTTTAEGVETVRQRDILRGLGC 874

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             +Q    +  +       LL ER
Sbjct: 875 TQMQGWLFSPAVPAAKFRMLLAER 898


>gi|229182956|ref|ZP_04310189.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
 gi|228600580|gb|EEK58167.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
          Length = 569

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFV 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|196041809|ref|ZP_03109098.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196027303|gb|EDX65921.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 567

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|316933333|ref|YP_004108315.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315601047|gb|ADU43582.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 830

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/563 (24%), Positives = 260/563 (46%), Gaps = 19/563 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +W +D    + ++         G         +R  L  I 
Sbjct: 272 SLKKREESFRLLFDGNPMPMWVFDAQTFEFLSVNDAAVAHYGYPRDQF---LRMSLREIW 328

Query: 458 INDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              R+ +     + +  R   + +  +R   AD     ++   R +   +G     + + 
Sbjct: 329 P--REEWIAHGQTLLEMRDSYQSEGNWRHIKADGSEIHVLTFGRRVVF-DGRDGFLVAVV 385

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE++K+   I   A  D LT +PNR  +  RL   L  +         VM +D+D +
Sbjct: 386 -DVTERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQA-RGSGTMVAVMCVDLDLF 443

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G  +GD +L  +  R+ + +   D++ARL G+ F I+L S     + ++ A  
Sbjct: 444 KNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASNLAAR 503

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + ++ P ++   E+ + ASIG A   S       + +NA++A+Y AK  GG     F 
Sbjct: 504 LIEILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGCHHFFE 563

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  ++ DL  A    E  L Y P+I L ++ I G E L++W HP+ G IS 
Sbjct: 564 KEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGGFETLLRWRHPERGMISP 623

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S+F+ +AE++ +I  +  ++L +   +  SW        + + +N++        L + +
Sbjct: 624 SDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS-----DVKVAVNLSPVQFRSRNLVQVV 678

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + ++++   P R++L  +ES+ + + + +   L +LR +G+ +++DDFGT  S LSYL 
Sbjct: 679 ISALAQSSLVPHRLELEITESLFLADSDTNLATLHQLRSLGVRISMDDFGTGYSSLSYLR 738

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +   T     +AI+R+I  + ++++ T +A+ +     +  L   GC
Sbjct: 739 SFPFDKIKIDRSFVKDLTERPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDALRAEGC 798

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
             +Q    +     + I  LL  
Sbjct: 799 HEVQGFLFSPARPASEICGLLTR 821


>gi|126174964|ref|YP_001051113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella baltica OS155]
 gi|125998169|gb|ABN62244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS155]
          Length = 1419

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 859  QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 916

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 F T + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 917  E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ +++           +MV+D+D +K+
Sbjct: 973  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  +  RI  LL     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKNSDISASAAIANRII 1087

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            + +     +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   +++    + Y P + L   +I G+EAL++ +HP  G I  ++
Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPIHGLIPPND 1207

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1266

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIVVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1386

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +       LL+E
Sbjct: 1387 IQGYIFSKAIKETEFTLLLQE 1407



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
             IV+ I + V + +L      + I    ER  L++ GSGD +WDWDI    +  +    
Sbjct: 711 AAIVLFISYLVTKTILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             L            +    IH  D++  R  L+          +  +RV+  D+ + W+
Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
           + R + +  +   + LR  G   +I++ K+  E 
Sbjct: 830 LDRAKIVERDEKDNALRMTGTIKNISQFKQKEEQ 863


>gi|119896856|ref|YP_932069.1| GGDEF/EAL/PAS/PAC/GAF-domain-containing protein [Azoarcus sp. BH72]
 gi|119669269|emb|CAL93182.1| GGDEF/EAL/PAS/PAC/GAF-domain containing protein [Azoarcus sp. BH72]
          Length = 1070

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 155/605 (25%), Positives = 265/605 (43%), Gaps = 20/605 (3%)

Query: 352  IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
            +   + I      D+ Q        L   L      Q        ++      ER   A+
Sbjct: 470  VLGALTIGAARPGDLDQAGTALLKELAEDLAFGIATQRTAVARREAEVALRLRER---AI 526

Query: 412  LGSGDIVWDW---DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
              S D V  +   D         P    ILG+A   +       L              L
Sbjct: 527  ESSSDGVLIFALGDDGPRIRDVNPAAERILGMARALLVDAPAPALTVFAPGALAELGVAL 586

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
               V  R   L+ E     AD    W    + P+  +       + +  D+TE+   L  
Sbjct: 587  ---VCGRETHLEVE--GERADGSPFWCECALAPVRAAGD--AHVVCVVKDVTERVLYLRE 639

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A  D LTG+PNR    DRL   +  +   + L   V  ID+D +K +ND +G   G
Sbjct: 640  LERQAKYDGLTGLPNRYLLDDRLEQAIVAARRHERL-LGVAFIDLDHFKVVNDNVGHRQG 698

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D++L     R+  +L+  D  AR  G+ F ++L    +          ++ ++A P  L 
Sbjct: 699  DELLRQAASRLAAVLRDGDTAARQGGDEFVVLLPDLGDERDAFRILGRLQAALAEPFRLD 758

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
            +R   VT SIG + +         +LK+A++AMY AK  G N V  F   ++    DR+ 
Sbjct: 759  DRSFFVTCSIGVSLYPRDGGDGDTLLKHADIAMYQAKAAGRNVVRFFTAEMNIQVRDRLQ 818

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            ++  L  A+EN EL+L + P +     +++G EAL++W HP+ G +    F+ +AEE  +
Sbjct: 819  LEGALRSALENGELHLAFQPQVDGGSGQVIGAEALLRWQHPELGAVPPVRFIPLAEETGL 878

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  I  ++L    R    W        + I +N++++     +L   +  ++ +T   P+
Sbjct: 879  IGPIGEWVLRAACRQARQWEQAGRR--LRIAVNVSARQFRSPDLPARIAEILDETGLPPA 936

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +ES++MG+ E++  +L RL+++G+SL LDDFGT  S  +YL   P DT+K + S
Sbjct: 937  LLELELTESMLMGDAEQAEEMLHRLKQLGVSLALDDFGTGYSSFAYLQRFPIDTLKIDQS 996

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +       +  AI+ +II +A ++   +IA+ +   +  ++L   GCD +Q      P+
Sbjct: 997  FVRSMVAGVRGEAIVVAIIALAHSLGMRVIAEGVETPLQQRQLFEFGCDELQGYLFGRPV 1056

Query: 945  GFNSI 949
                 
Sbjct: 1057 PAAEF 1061


>gi|26987128|ref|NP_742553.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24981758|gb|AAN66017.1|AE016230_8 sensory box protein [Pseudomonas putida KT2440]
          Length = 1247

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 272/580 (46%), Gaps = 12/580 (2%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + G   +  +         +    +  +     + + V   DI +         + I G 
Sbjct: 658  ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717

Query: 441  AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   ++    R      H  D   +  +         G  Q E   +  + + +   + I
Sbjct: 718  SEIEALGQTPRLLASGQH--DSAFYLAMWHQLTAE--GHWQGEIYNKRKNGELYPSWLTI 773

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + NS+ +I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL  +L  + 
Sbjct: 774  SAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQ 833

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +  +  V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I
Sbjct: 834  VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +     +  A  +      P    E E   +ASIG + +       S +++NA+ 
Sbjct: 893  LLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADA 952

Query: 680  AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY +K +G N VE++     +  S+R+ ++ +L  AVE +E+ L + P + L  + +VG
Sbjct: 953  AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP +G +    F+ +AEE   I  +  ++LE+  R + +W+     P   + 
Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-QPFGPLS 1071

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN+A   L    L   ++ L+         ++L  +E+ +M   E +  +L +L+K+G+ 
Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA
Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
            + +  +   + L   GC+ IQ   V+ PL         L+
Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAFLR 1231



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +    L+  ++ +VI I   +   +       Q + S        V     I W+
Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D         +P    +LG            W   +H  D    +   DS     R   
Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD Q  W+   +  +   +G      G+  DI+E K++ +
Sbjct: 385 SLDYRVIRADGQPLWVRNIVSMI--EHGHQPVMRGLMIDISETKRTED 430



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424
                      L         ++ +       Q + +  E+ + A   S D  +      
Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              +        + G     ++     +   ++ +N+R      L+           +  
Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +R +D Q     +  RP+  +   +   + IA DITE+    E +   A 
Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686


>gi|295699869|ref|YP_003607762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295439082|gb|ADG18251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 799

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 120/524 (22%), Positives = 240/524 (45%), Gaps = 10/524 (1%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  + ++ G+    +      WL  +   D +     ++          ++E+R+R  
Sbjct: 262 HVSAGVESVFGITPQELSNRPSAWLDLVVEEDLEPLLAEMNRIASEVSEG-RFEYRIRRP 320

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D    W+     P+ + + +++R +G++ DIT +++ L  +   A+ D LTG+ NR + +
Sbjct: 321 DGCLRWIRSTAYPVCDGSANVVRIVGVSEDITLEQERLAALDHLAYTDGLTGLANRGALI 380

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             +  +        N+   +M +D+D++K +ND LG    D +L  + + I   L     
Sbjct: 381 RHMKKLC-----RQNVAFGLMFVDLDRFKVLNDTLGHTAADRLLQDIAKVIQGALPPDAC 435

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F +I+  E++   +A  A ++    +  +        VTASIG + +     
Sbjct: 436 VARLGGDEFAVIVRGESDKATLASLAQSLLNLFSSDVRKDHAAPFVTASIGISIFPEHGR 495

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
               +L +A++AMY AK  G N        SS       ++ +L  A+ +++  L +  I
Sbjct: 496 DHEALLTSADIAMYAAKKGGRNGFRFADEASSDVLGDFELECNLPTALASNQFVLHFQGI 555

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  + G+EAL++W+HP  G +    F+ I EE   I  +  ++++     +  W+ 
Sbjct: 556 HEPASLAVKGVEALVRWNHPARGLVGPGSFIPILEESGFIVEVGAWVVDAALAQLAVWQA 615

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +N++++ L D+ L   +   + K    P  +++  +ES +M NP  ++  
Sbjct: 616 AGKKE-LSMSVNVSARQLRDDSLVAIVDQALRKHRVPPRCLQIELTESALMENPSLAQAT 674

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905
           L  L+++G+ + +DDFGT  S L YL     D VK + S          A  I+R II M
Sbjct: 675 LMALKRLGVRIAIDDFGTGYSSLRYLADFSPDIVKIDRSFTARLGRDSAAASIVRGIIQM 734

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +  +   + A+ +     +  L   GCD++Q   +  P+   ++
Sbjct: 735 SHELGIKVTAEGVETNQQLHALRDAGCDFVQGFFLTKPMKAENL 778



 Score = 47.6 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 13/212 (6%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +    G  R + L    I +        +             AL   L ++    G  ++
Sbjct: 39  FLSRYGQRRTIPLPSLCIAVAAGVGIGALVHQ---AASEAATALRVALSMMSGAAGLAIV 95

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMH 446
           +  L   Y  Q   +     S  +  + D +         +  +   A ++   +   + 
Sbjct: 96  RRKLGLDYARQSAATAL--ASGLLHANRDCLKVLATDGKMLRVSEHGAMLMEAESPEQLS 153

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   +WL +    DR      L   V                  +  W    + P++  +
Sbjct: 154 G--ADWLAFWTGADRTAAEQALAGAVSGNSTSFTGSC--ATTRGRTKWWNSTLTPVTGDD 209

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           G++   +  + D+T+Q    E +     +D L
Sbjct: 210 GEVTALLCASEDVTQQ---SELLKTLRERDEL 238


>gi|192289273|ref|YP_001989878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192283022|gb|ACE99402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 879

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 147/619 (23%), Positives = 264/619 (42%), Gaps = 20/619 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I++ +         + R    ++        +++ +++   + Q         + +  D 
Sbjct: 270 IVMVVTTTTEDALASWRTQTKLMVSVAAVSALVVTVILLLIIHQIGKHHRATQRKLQLDK 329

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRD 462
           +R   A+      +  +D     V        + GL+   +     +R+ L   H     
Sbjct: 330 QRLDTAINNMSQGLLLFDAQARLVICNQRYMEMYGLSPDVVKPGCSLRDVLE--HRKSTG 387

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +    +D        RL  +            +     P+         ++    D TE+
Sbjct: 388 SLGGNVDKITTDLIDRLSSQRVSEIHSIHDRSIEFSSVPVPGG-----GWVITHEDATER 442

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E I   A  D+LT +PNR  F  RL   L  ++        ++ IDID++K IND 
Sbjct: 443 KRYDERISYLAHFDSLTDLPNRTMFRQRLENELQRASR--GAPFALLYIDIDEFKSINDT 500

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD++L  +  R+ + ++  D +ARL G+ F II I  + + +       + +SI 
Sbjct: 501 LGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIGVSGADEATALVDRIYESIR 560

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
           +P   L  +++  ASIG A          +++KNA+LAMY AK  G      F       
Sbjct: 561 LPYQCLGHQLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEPEMDAV 620

Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  ++ DL  A+ +    + Y P + L    I G EAL++W HP  G IS +EF+ I
Sbjct: 621 AKTRRQLEFDLRQAIGDRGFEVHYQPQVDLSSGAITGCEALLRWRHPTRGMISPAEFIPI 680

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  I  + L     +  +W        I + +NI+        L   + +++  
Sbjct: 681 AEDTGLINEIGAWTLATACSEAATW-----DADITLAVNISPVQFRQPSLALLVASVLGA 735

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R++L  +E+V++ + + +   L +LR +G+ ++LDDFGT  S LSYL   PFD 
Sbjct: 736 AGLPAERLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGTGYSSLSYLQRFPFDK 795

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S + G    E   AI+++++ +A     T  A+ +      + L+ +GC  +Q  
Sbjct: 796 IKIDRSFIDGIDTTEGSTAIVQAVVNIAAARRMTTTAEGVETARQREILSTLGCTQMQGW 855

Query: 939 HVASPLGFNSILKLLKERF 957
             +  +   +  KLL    
Sbjct: 856 LFSPAVPAAAFRKLLSSHL 874


>gi|319761288|ref|YP_004125225.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317115849|gb|ADU98337.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 698

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 124/574 (21%), Positives = 253/574 (44%), Gaps = 16/574 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++  V       Q +    ER       + + +  +      +     +  + G    
Sbjct: 129 LVLVNDVTERLEAEQAVRQSEERMRKFAEATEEGL-AFHRDGRILDANASLQRMTGYTLA 187

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G  R+   +I    R      L      R     YE  +R  D     +    + + 
Sbjct: 188 ELVG--RSIFDFIQPEYR-----ALAQEYTRRGREYPYELAMRHKDGHAIPIEAVGKTLP 240

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               +    + +  DIT +K++ E     A  D LT +PNR+  + +L   +  +     
Sbjct: 241 QQQDE--YRVVVVRDITARKQAQERARFLALHDPLTQLPNRRHLMLQLARTVATAQERRK 298

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  V+ +D+D +K +N+ LG   GD +L  + RR+ E +K  D +A + G++F ++L  
Sbjct: 299 -RSAVLFVDLDHFKTVNESLGHEAGDQLLCEVARRLQEGVKATDFVAHVGGDQFVVLLSG 357

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  A  A A+ + I     + E +++ + S+G + +        E+L+ A+ AM  
Sbjct: 358 LRGRAAAAAAADALIERIRAVYTIGETQLSPSPSVGISVFPDDGYGPDELLRRADAAMQQ 417

Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      +           +  +  L  AV +  L L Y P +++    +VGLEAL
Sbjct: 418 AKESGRGTRLFYTPDMEGQPAEVLQQEHLLREAVFHDALELHYQPQVQVASGRLVGLEAL 477

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +   +F+ +AE   +I  I  ++L    R + +W ++     + + +N++
Sbjct: 478 VRWRHPQRGLVGPDDFIPLAESRGLITPIGRWVLREACRQLKAWHNEGLAL-VPVAVNLS 536

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    ++   +  ++ +T   P  +++  +E+ +M + E +R  L  L+ +G+++T+D
Sbjct: 537 AIEFRQRDVAGEIARVLQETGLEPQYLEVEITETTLMQHAEHTRATLQALQAMGVAVTVD 596

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D +K + S +  +      +AI+ +I+ +A++++   +A+ + 
Sbjct: 597 DFGTGYSSLTYLKRYPLDKLKVDRSFVADTPADGDDVAIVTAIVQLARSLQLQSVAEGVQ 656

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +  L  +GC+  Q   +A P+        L
Sbjct: 657 TPEQLTLLQSLGCELAQGFGIAPPMDVRRTRAWL 690


>gi|237799947|ref|ZP_04588408.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022802|gb|EGI02859.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 747

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/597 (23%), Positives = 273/597 (45%), Gaps = 46/597 (7%)

Query: 400 IFSDGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIR 450
           +    ER  L    V+ + D +        D+     V   P    I G     + G   
Sbjct: 150 LLGSIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEAEVIGQTP 209

Query: 451 NWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             L      D       ++   + + R  ++ E      D    W+ + I P++N  G  
Sbjct: 210 RILQC---EDTSRETLDVIREALTHWR-PVEVELVNTRKDGSQFWVELSIVPVANEKGWF 265

Query: 510 LRYIGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIP 542
             ++ +  DITE+K                           +  E +   AF D LT + 
Sbjct: 266 THWVSVQRDITERKESQHLAQRARLEWEEKLALQSRLEERERISEELAYIAFHDELTSLY 325

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR   ++ LT   +        R TV+ +D+D +K +ND +G   GD +L  +  R+   
Sbjct: 326 NRAYLMNELTQAFENLDPQYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNC 384

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +
Sbjct: 385 VRSNDVLARIGGDEFAILLMGKDQPETAVRMAERIVSQLHAAIQIEGQDIFISCSIGIVT 444

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720
              S     ++L++A++AMY AK +G      F  S      D ++I+  L  A+E+ + 
Sbjct: 445 ACDSHSKPEDLLRDADVAMYSAKKQGRGRWSIFNASMREAAIDTLVIQNALRQALEDKDF 504

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y PI     E++VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   
Sbjct: 505 LVFYQPIYSSDSEDLVGVEALVRWDHPSMGIISPDAFIPIAEDLGIIHELGEWVMNKACS 564

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           ++ +WR   +   + + +N++ K+L      + +  +I+ T    +++++  +ESV +  
Sbjct: 565 EVQAWRKAFSHLDLRLNVNVSGKELSHPGFVDQVTRIIAVTGLPATQLQIEVTESVFLYQ 624

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898
           P+    +L ++R++G+ + LDDFGT  S L Y+   P D VK + S ++     ++  AI
Sbjct: 625 PDEIAEILRQIRQLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSEAI 684

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + SI+ + + ++  I A+ +  E     L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 685 VSSILSLGRALDLDITAEGVETEEQYNRLHKMGCPYFQGYFLNRPMRSEALEHVIRS 741


>gi|95929780|ref|ZP_01312521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134076|gb|EAT15734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 995

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/611 (22%), Positives = 267/611 (43%), Gaps = 12/611 (1%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            I        +  +          +         T ++ +       Q +       S  
Sbjct: 382 SILFEFTYEHKDGHHFPVEIRSIVIDYRGEPCVLTAVRDISERREKDQRLRE----LSAV 437

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           V  S D V   D   + +        + G +   +   +  +L     +DR  +  ++  
Sbjct: 438 VDHSNDAVMIMDDSGNVLAVNKTFCDLSGYSEEDLLNRLPLFL-RAERHDRVFYTDLVKQ 496

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 GR + E  +R          +RI  +        RY+ ++ D++E+K   E +L
Sbjct: 497 LRDE--GRWEGEIWIRHHRGHSLPQWLRIETVEEPENKTTRYVAVSADLSEEKAWEEKML 554

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG  NR  F DRL   +  + +   +   V  +D+D +K+IND LG   GD 
Sbjct: 555 QLAQTDPLTGSANRVLFRDRLQQAIKRAQSRKGMEVQVFSLDLDYFKRINDSLGHVAGDR 614

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L+ +  R+  + +  D ++RLSG+ F I++   N+ +     A  M ++I+ P+ +   
Sbjct: 615 MLIEVAARLKRVSRGQDTISRLSGDEFAILVTCLNDEVDATRMAQKMLQAISEPMMIDGA 674

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           E+ +TASIG A +         ++ NA+ AM+ AK +G + +  F         + + I+
Sbjct: 675 ELIITASIGVALYPGDGDDDVTLMANADNAMHQAKRQGRSRMCYFSAELADKAQEYLTIE 734

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+ENSEL L Y P + L   +IV  EAL++W   + G +S    + +AEE  +I 
Sbjct: 735 SKLRRALENSELQLYYQPQVDLATGDIVAAEALLRWHSDELGWVSPDRMIPVAEEGGLII 794

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A+  +++E   R I  +   +      I +N++++  L+    + +  ++      PS +
Sbjct: 795 ALGRWIIEECCRTIRGYHRSSGN-WFPIAVNVSARQFLEPGFTDELVEIVRFYDIPPSLL 853

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+++ +  ++   +  L   G  + LDDFGT  + L+YL   P   +K + + +
Sbjct: 854 ELELTESMMLDDVGKAIETMKALSFKGFKIALDDFGTGYTSLAYLKQFPVSKLKLDRAFV 913

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T         AI  +++   + +  +++A+ I   +  + L  MG  + Q    + PL  
Sbjct: 914 TDVHRDVNDAAIAEALVTFTRVMGLSLVAEGIEESVQHECLNLMGFRFGQGYLFSRPLPK 973

Query: 947 NSILKLLKERF 957
           +  + LL+ + 
Sbjct: 974 DQFISLLETKL 984



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 51/160 (31%), Gaps = 6/160 (3%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            L+ +VIL         L      + +    +        S D +   ++  + +     
Sbjct: 282 TLIQLVILDITEQYHSQLKLKELQEELERSLDEYRTLFDYSVDGLTVRNLNGELLLCNKS 341

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              +LG     ++    ++       ++          +  +   + +EF     D    
Sbjct: 342 YEEMLGRTFAELNHQ--HFTKLCDPQEKSALSEKYREALEGK--SILFEFTYEHKDGHHF 397

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            + IR   + +  G+    +    DI+E+++  + +   +
Sbjct: 398 PVEIR-SIVIDYRGEPC-VLTAVRDISERREKDQRLRELS 435


>gi|313496751|gb|ADR58117.1| Sensory box protein [Pseudomonas putida BIRD-1]
          Length = 1247

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 272/580 (46%), Gaps = 12/580 (2%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + G   +  +         +    +  +     + + V   DI +         + I G 
Sbjct: 658  ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717

Query: 441  AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   ++    R      H  D   +  +         G  Q E   +  + + +   + I
Sbjct: 718  SEIEALGQTPRLLASGQH--DSAFYLAMWHQLTAE--GHWQGEIYNKRKNGELYPSWLTI 773

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + NS+ +I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL  +L  + 
Sbjct: 774  SAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQ 833

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +  +  V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I
Sbjct: 834  VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +     +  A  +      P    E E   +ASIG + +       S +++NA+ 
Sbjct: 893  LLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADA 952

Query: 680  AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY +K +G N VE++     +  S+R+ ++ +L  AVE +E+ L + P + L  + +VG
Sbjct: 953  AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP +G +    F+ +AEE   I  +  ++LE+  R + +W+     P   + 
Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-EPFGPLS 1071

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN+A   L    L   ++ L+         ++L  +E+ +M   E +  +L +L+K+G+ 
Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHHQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA
Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
            + +  +   + L   GC+ IQ   V+ PL         L+
Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAFLR 1231



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +    L+  ++ +VI I   +   +       Q + S        V     I W+
Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D         +P    +LG            W   +H  D    +   DS     R   
Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD Q  W+   +  +   +G      G+  DI+E K++ +
Sbjct: 385 SLDYRVIRADGQPLWVRNIVSMI--EHGHQPVMRGLMIDISETKRTED 430



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424
                      L         ++ +       Q + +  E+ + A   S D  +      
Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              +        + G     ++     +   ++ +N+R      L+           +  
Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +R +D Q     +  RP+  +   +   + IA DITE+    E +   A 
Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686


>gi|120609840|ref|YP_969518.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120588304|gb|ABM31744.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 1120

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 140/574 (24%), Positives = 259/574 (45%), Gaps = 13/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
               V    + +  +     R +  V    D+V+  D     ++  P     LG     + 
Sbjct: 530  AVDVTEQKHLALELSQQRSRLASLVNAIPDVVFLKDAAGRYLSCNPVFERYLGRRERDIV 589

Query: 447  GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            G        +   +    R + +  +   +  +  E    A D    +      P+ + +
Sbjct: 590  GLGDE--ELMTPVEAARVRQLDERAMAAWQPLVYEETLTFAEDGYAGYFETIKTPIRDMH 647

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G +   + ++ DIT++KK+ + I   AF D LTG+PNR+  LDRL         ++ L  
Sbjct: 648  GHVTGLLSVSRDITDRKKAEQQIELLAFFDALTGLPNRRLLLDRLQRAGAACQRNEKL-G 706

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             ++ ID+D +K +ND LG  +GD +LV + +R+ E ++  D +AR  G+ F ++L   + 
Sbjct: 707  ALLFIDLDNFKDLNDTLGHDMGDRLLVQVAQRLQECVRTSDTVARFGGDEFVVMLEGLDA 766

Query: 627  SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                        A  +   +  P  +  ++   T SIG   +   + T  E+LK A+LAM
Sbjct: 767  DTALAALQAEQVAEKLLAQLNRPFEMGAQQHYSTPSIGITLFGDQRRTVDELLKRADLAM 826

Query: 682  YHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N    F             ++ DL   +   EL +   PI+      + G E
Sbjct: 827  YQAKAAGRNTQRFFDPDMQAQVTARSQLESDLRQGIARHELTVHLQPIVDGST-RLCGAE 885

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W HP  G IS ++F+ +AEE  +I  +   +L+     ++ W          I +N
Sbjct: 886  ALVRWRHPVKGLISPADFIPLAEETGLILPLGRQVLQTACEQLVRWATHPATASFTIAVN 945

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++++     +    +   ++ T  +P R+KL  +ES+++G+ E +   + +L+++G+   
Sbjct: 946  VSARQFRQPDFVAEVLGTLAGTGANPQRLKLELTESLLLGDVEDTICRMAQLKRVGVGFA 1005

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S LSYL  +P D VK + S +    +     AI+R+I+ +AK+++  ++A+ 
Sbjct: 1006 LDDFGTGYSSLSYLKRLPLDLVKIDQSFVRDVLTDPNDAAIVRTILALAKSLDLQVVAEG 1065

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +     +  L   GC+  Q      P+   +  +
Sbjct: 1066 VETAGQLSFLKLHGCEGFQGYLFGRPVPLEAFER 1099



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 84/268 (31%), Gaps = 20/268 (7%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK----- 332
           W       + +            +      A +    L S  L      +++GM+     
Sbjct: 151 WALVSALASLAIAWTATTDVPRDWLVAAGHAPLRIAALVSGTLMALSACLFYGMRQRRTD 210

Query: 333 ----GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL--VGGLVLIVILIGFTV 386
                + R   +  A + +      + +   +     ++  AL   G  +L   +    +
Sbjct: 211 ASVKRHGRRRTMAAAAVSMAAAQFLMAVPPERFYWARMLAHALHVAGYALLFQAVFIAGI 270

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGD-----IVWDWDIVRDRVTTTPDIATILGLA 441
                        +     R  L      D     +V + D  R  V     +  ++G++
Sbjct: 271 RMPYARLREAESRLRESESRLQLLGRNLPDSVPYQMVREPDGRRRFVHMGEALERLVGVS 330

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  +    +     I   DR   +   D       G  +   R+R  D    W+ +   P
Sbjct: 331 AADVMEDAQRLFDRIDPEDRA-AQAEADEVSYRTMGVGESVVRMRRMDGAPRWIRLSSSP 389

Query: 502 --MSNSNGDILRYIGIANDITEQKKSLE 527
             +   +G ++ + G+  D+T+Q+++ +
Sbjct: 390 RLLQGGSGRVI-WDGVLTDVTQQREAQD 416



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 17/146 (11%)

Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP---- 448
              +Q +    E + +  +      +   D     +   P  A  L      + G     
Sbjct: 411 QREAQDLSRAHEIQLASLLGRMPGGISRLDRDLRILYVNPSQAQWLRRTPQELEGQRASD 470

Query: 449 --IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                 L  +H          +   +  R   + +++R         +    I P +  +
Sbjct: 471 VLSAELLQSLHP--------HMLQALQGR--PVVFDYRSPYRGAGPEFFHTTIIPETGPD 520

Query: 507 GDILRYIGIANDITEQKKSLEGILCN 532
           G ++  +  A D+TEQK     +   
Sbjct: 521 GRVVAIMVFAVDVTEQKHLALELSQQ 546


>gi|238753064|ref|ZP_04614518.1| Sensory box-containing diguanylate cyclase [Yersinia rohdei ATCC
           43380]
 gi|238708721|gb|EEQ00985.1| Sensory box-containing diguanylate cyclase [Yersinia rohdei ATCC
           43380]
          Length = 853

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 272/590 (46%), Gaps = 17/590 (2%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +   L L   L+    +            + +  ER       + D +W+ D        
Sbjct: 272 VAIILGLTGWLVLRRTMSEARIADKNKAALMASEERFRHVAESATDWLWETDADLRITYL 331

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAAD 489
           +    TI GLA+    G   + L      D    R+ L  +     R  LQ  +   +A 
Sbjct: 332 SQRFLTITGLAAEQWLGRKLDSLLNC---DIIPLRSWLQYTHQTESRNELQCTY--LSAK 386

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                  I  +P+   +G+ + + G A+DIT + K+ E I   +  D LTG+PNR     
Sbjct: 387 GDKRICRIYAKPII-KDGETVGFRGTASDITREIKAQERIQHLSLHDALTGLPNRLRMKQ 445

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L   L   A   +    ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++
Sbjct: 446 FLENKLLNLAGTSH-PLVILNVDLDKFKPVNDTFGHVTGDLVLHQVSERLRGCLRDQDLV 504

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           AR  G+ F +I+   ++  +I      +   I  P  + E++I + ASIG A      I 
Sbjct: 505 ARQGGDEFILIITGLSSIQEIEQLCARVIAQIESPYIINEQDIYIGASIGIALAPQDSIH 564

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
           + E+L+ A++AMY AK+ G N    +             ++  L  A++++E  L Y P 
Sbjct: 565 AEELLRFADIAMYEAKNSGRNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFCLYYQPR 624

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            R+   ++ G EAL++W+HP  G +   +F+ +AEE  +I +I+ + + +  +D  +W  
Sbjct: 625 YRIEGTQLTGAEALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACQDATTWPQ 684

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +NI++ +  +  L E ++ ++  T     R++L  +E +++ + + +   
Sbjct: 685 S-----LIVSVNISAIEFRNQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKT 739

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           +  L+ +G+ L++DDFGT  S L+YL   PFD +K + S       + + ++I+  II +
Sbjct: 740 MMALKTLGVRLSMDDFGTGYSSLNYLRRFPFDGLKIDKSFTDELAESPEGLSIVEGIINL 799

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +  T+ A+ +  E  +  L  + CD +Q   +  P+  + +  L++ 
Sbjct: 800 GHALSMTVTAEGVETEEQLTCLQTLMCDEVQGYFLGKPMKLDDLSMLIRS 849


>gi|308048095|ref|YP_003911661.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ferrimonas balearica DSM 9799]
 gi|307630285|gb|ADN74587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ferrimonas balearica DSM 9799]
          Length = 1465

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 131/565 (23%), Positives = 253/565 (44%), Gaps = 18/565 (3%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +    + A+  + + V   D         P    IL      + G   +    
Sbjct: 905  AHRRLEEEHGLYAQAIENTAEGVVILDHQLMVQGCNPAAEMILATPRARLMGDRFH---- 960

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             H   R+    +    V       Q E  +R +  +   + + I PM +   +    + +
Sbjct: 961  -HYWYREQGPQL--DAVTRGNASWQGEVLLRGSAGETVPVWLNISPMGD---NARHLVAL 1014

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DITE+K++   +   A  D LTG+PNR  F  RL   +  +         +M +D+D+
Sbjct: 1015 FSDITERKRAELELRRLADFDPLTGLPNRSQFNTRLHAAV-QARGPGGRPMALMFLDLDR 1073

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K IND  G + GD +LV   +R+  L+   ++L R  G+ F +++       ++   A 
Sbjct: 1074 FKHINDTYGHSTGDGLLVQAAQRLKGLMGDSELLCRFGGDEFIVLISEFRTRAELERLAQ 1133

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +  +IA P  L  +   V+ S+G A +         ++++A+LAMYHAK  G      +
Sbjct: 1134 RVLSAIAEPFELDGQLFYVSTSVGIACFPDDAQQPETLIRHADLAMYHAKEEGRGRYSFY 1193

Query: 696  RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                    + ++ ++  L  A+E ++L L Y P + L   ++ G+EAL++W   + G + 
Sbjct: 1194 TPQRDAQATYQLELENALRQALEANQLELHYQPQVDLQTGQVTGVEALLRWFDEENGAVP 1253

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               F+ +AE   +I  ++ + L +  +  + W        I + +N+++      +  + 
Sbjct: 1254 PDTFITLAESSGIIVKLDRWALRQACQSFVRW---GLGDGIKLSVNVSASHFHQPDYVDF 1310

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  ++++T    S++ L  +E V+M     ++  L  LR++G+S+ +DDFGT  S L+YL
Sbjct: 1311 VSRVLTETGLPASQLCLEITEGVLMKRVSLAQSHLHALRRLGVSVAVDDFGTGYSSLAYL 1370

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                 D++K + S +          AI RSI+ M +N+   ++A+ +  E     L   G
Sbjct: 1371 SQFAVDSLKIDRSFVHDLPGNLTNGAITRSILDMGRNLGLQVVAEGVETEEQEAFLRHQG 1430

Query: 932  CDYIQDSHVASPLGFNSILKLLKER 956
            C  +Q    A P+   +    L+ER
Sbjct: 1431 CARMQGFRYARPMNAEACCLWLQER 1455



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 7/184 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
             +M       ++ ++      LV  ++L      + V     F+  +    +R  LA+ 
Sbjct: 738 VSFMVNQHWWQSEPVKALAGSALVAFLMLGLLQRQRQVRRIRQFNTELSQSQQRLHLALS 797

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSF 471
                 W+WD   +R     +    LG         +       IH +DR          
Sbjct: 798 AGRSDTWEWDKASNRFRL-ENHQRCLG---EDDEPRLLEMNQMTIHPDDRLRVWRAWREH 853

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGI 529
                     E+R      ++ W+    + +     NG   R +GI +D+T  ++  E  
Sbjct: 854 YLGLSEHYDVEYRQADLQGRWRWIWAAGKAVERDERNGQARRVVGIYSDMTAHRRLEEEH 913

Query: 530 LCNA 533
              A
Sbjct: 914 GLYA 917


>gi|119476537|ref|ZP_01616888.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [marine gamma proteobacterium
           HTCC2143]
 gi|119450401|gb|EAW31636.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [marine gamma proteobacterium
           HTCC2143]
          Length = 642

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 128/585 (21%), Positives = 244/585 (41%), Gaps = 13/585 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V      +      +   ++ +    ER +     SG  +W+ ++    +  +P +A I 
Sbjct: 61  VADRTAALTAARDRSEEGARQLERVNERFARVAEASGAGIWEINLQTKEIYCSPKLARIF 120

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +       ++N+         +         +      +  E ++   D   HW  + 
Sbjct: 121 GYSVAETTYRLKNY-HLFKGAGSEEVNKQFGR-INISSTPVDLECQIVVGDGSSHWFKLN 178

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                ++NG  LR  G   DI E  K+   +   A  D LT + NR  F + L   +  S
Sbjct: 179 ALMHKDNNGKPLRLTGAFFDINETVKNRLLVEHMATHDTLTKVANRALFNENLERAIKES 238

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               N    V + D++ +K+IND  G   GD +L  +   +   +     +ARL G+ F 
Sbjct: 239 KES-NELFCVAIADLNSFKEINDNYGHVAGDQLLRHVADSMQSAVGNTGTVARLGGDEFA 297

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +IL    N+  +      +      PI   + EI +  S+G +++ +       + ++A+
Sbjct: 298 VILRDTKNAENVRKICEKIVAQCTKPILHDDAEINIHISLGVSTYPTDGRNIFNLTRHAD 357

Query: 679 LAMYHAKHRGG----NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           LAMYH K  G         S  + +       IK D+  A+E  +  L Y P   ++   
Sbjct: 358 LAMYHGKKAGNNESSCCFFSSEIDAKDRAAREIKVDIRRAIERQDFILHYQPKYNILTNR 417

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G+EALI+W           EF+  AEE  +I  ++ ++++   R    W  Q     I
Sbjct: 418 VEGVEALIRWPREDGSFTPPDEFIPHAEESGLINELSAWIIDEGCRQAAEWHRQG--LAI 475

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN--PERSRLLLGRLR 852
            I +N++     + +L    QA +         I +  +E+  + +    ++   L  L 
Sbjct: 476 PIALNMSPVQFANGDLPYIFQAALRHHSLPGEMIGIEITENCFIEDENLGQTNNQLKILN 535

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++GI +++DDFGT  S LSYL  +P   +K + S +     + +  AI+ +II ++  + 
Sbjct: 536 ELGIEISIDDFGTGYSSLSYLHQLPIQVIKIDRSFIAQLFVSAEGTAIVDAIIKLSHALG 595

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            T++A+ +  +  +  L    C+  Q  + +  L    IL+L+++
Sbjct: 596 KTLVAEGVETKEQLAWLREKKCESAQGYYFSPALSPVKILELVQQ 640


>gi|187920304|ref|YP_001889335.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
            [Burkholderia phytofirmans PsJN]
 gi|187718742|gb|ACD19965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia phytofirmans PsJN]
          Length = 1059

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 161/586 (27%), Positives = 272/586 (46%), Gaps = 13/586 (2%)

Query: 375  LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTT 431
             +L    + F     VL        I S  +R  L       S + +   D  R  VT  
Sbjct: 472  AMLSARRLAFQGRDAVLTAFTPINQIKSMEQRLELWGKVFEASSEAILILDAQRRLVTAN 531

Query: 432  PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                   G  +  + G    +L   H+   D    ++DS    R+     E  VR     
Sbjct: 532  ASFYRATGYRADDVAGKEPAFLSGAHVQG-DLLAAVIDSV--DRQSAWHGEANVRRRAGS 588

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             +   + I  + +    +  YI    DIT++KKS   I   A  D LT +PNR  F+ RL
Sbjct: 589  DYPAWLMISAVRDRRASLSHYICTLIDITDRKKSEARIQFLAEHDLLTELPNRALFMKRL 648

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              +LD +   D+ R  V+ ID+D++K +ND LG  +GD +L S++RR+   ++  D ++R
Sbjct: 649  RAVLDHARVADH-RVAVLFIDLDRFKHVNDSLGHHIGDSLLRSVSRRLVRAVRADDTVSR 707

Query: 612  LSGNRFGIILISENNSLKI-ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            LSG+ F IIL   + + ++       +   +  P  L    + V+ S+G A +       
Sbjct: 708  LSGDEFTIILNGVSGAAEVGRTIEDRLLPLMRQPHELDGMALPVSCSVGVALFPDDGEDI 767

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPII 728
              +++NA+ AMY AK  G N V+ F          R  ++  L  A+   E  L Y P I
Sbjct: 768  ETLMQNADAAMYQAKGAGRNLVKFFTPDMAERALHRAQLEASLRNAIAMDEFRLEYQPCI 827

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 E+V +E L++W +P+ G +S +EF+ IAEE  +I ++  +++E+  R I  W D+
Sbjct: 828  DARTGELVAVEGLLRWHNPRLGKVSPAEFIPIAEESRLIISMGAWVIEQACRQIAEWNDE 887

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                P+ + IN+++  L D  L   +   + +   +P R++L  +E+V+M + E     +
Sbjct: 888  GLA-PLRVSINVSAIQLRDPNLIGMLATSLERNRVAPERLELEITETVLMDSAEHYESTV 946

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
              +RK+GI L+LDDFG   S LSYL   P D +K + + +         +AI+R+II + 
Sbjct: 947  AGIRKLGIKLSLDDFGVGYSSLSYLNRFPLDRLKIDRAFVKDMLDAPADLAIIRAIIELG 1006

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              +   ++A+ +  E   + L  +GCD +Q    +  L    +   
Sbjct: 1007 HELGLRVVAEGVESEHQAQILRNIGCDELQGFLFSPSLSPADLGSW 1052


>gi|241765936|ref|ZP_04763864.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax delafieldii 2AN]
 gi|241364109|gb|EER59329.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax delafieldii 2AN]
          Length = 1020

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/577 (24%), Positives = 254/577 (44%), Gaps = 13/577 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                   V       Q +     R       S D  W+ D     V           L  
Sbjct: 446  RVRTFADVTDYLGTLQALRESEARWRSLTHLSSDWYWEQDADFRFVRFDGSAERAQNL-P 504

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              MH  +  W    H    +         +        +E +   +D    W+ I   P+
Sbjct: 505  DEMHYGLARW-ELPHTAVAEGQWRKHRQQLEAHEVFHDFEMQRTTSDGTVVWVSISGEPI 563

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             ++ G    Y G+A +ITE+K +   I   AF D LT +PNR+  LDRL     L A ++
Sbjct: 564  FDAEGRFTGYRGVARNITERKAAEAEIRRLAFYDELTALPNRRLLLDRLAHATALCAREE 623

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +    ++ +D+D +K IND LG   GD +LV +  RI   ++  D +AR+ G+ F ++L 
Sbjct: 624  H-HGALLFLDLDNFKAINDTLGHEWGDRLLVQVAARIQACVRAADTVARMGGDEFVVVLQ 682

Query: 623  SENNSLKIADFA-----IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
              + +   A          +  ++  P  +  R++  T SIG A +  ++    E+L+ A
Sbjct: 683  GLHGAAPEAAAEAEAVAQKIIGALNDPFQVGNRDVHSTPSIGIALFRDAQEPVHELLQRA 742

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            ++AMY AK  G N +  F  +   +      ++ D+  A++ +E  L Y P++     ++
Sbjct: 743  DMAMYQAKALGRNTLCFFDPAMQAAASARSALEGDIRQALQRNEFLLHYQPVVNEA-GDM 801

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            +G EAL++W HP+ G +   EF+ +AE+  +I  +   ++      +  W          
Sbjct: 802  LGAEALVRWQHPQRGMVPPGEFIALAEQTGLILPLGRRVMRMACDQLAQWARDPRTAGWS 861

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            + +N+++++    +    +   + ++  S  R+KL  +ES+++ + E S L +  LR +G
Sbjct: 862  VAVNVSAQEFRHPQFVAQVLETLRESGASAHRLKLELTESLMLHDVEDSILKMQALRTVG 921

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913
            +  +LDDFGT  S L YL  +P D +K + S +    +     AI  +I+ +A ++   +
Sbjct: 922  LGFSLDDFGTGYSSLGYLKRLPLDQLKIDQSFVRDVLTDPNDAAIACTIVALAHSLGLEV 981

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +A+ +  E     L R GC   Q      P    +++
Sbjct: 982  VAEGVETEGQRAFLLRNGCRQFQGYLWGRPGPAEALV 1018


>gi|330821779|ref|YP_004350641.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327373774|gb|AEA65129.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 1065

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 272/563 (48%), Gaps = 11/563 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +    E  +     S + +   D  R  +T         G  +  + G + N++     +
Sbjct: 499  MEQRLELWAKVFEASSEAILILDSERRLLTANASFYRATGYRAEKISGTLPNFVLASGSD 558

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                  + L + V         E  VR      +   + I  + + +G +  YI    DI
Sbjct: 559  --QPLMSRLAALVD-ISSVWNGEAVVRRRAGGDYPAWLMISAVRDKHGAVSHYICTLIDI 615

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T++KKS   I   A  D LT +PNR  F  RL T ++ +   ++ R  V+ ID+D++K I
Sbjct: 616  TDRKKSEARIQFLAEHDVLTELPNRALFTRRLGTAIEQA-RHNDSRLAVLFIDLDRFKDI 674

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI-AMR 638
            ND  G   GD +L S+++R+ + ++  D ++RL G+ F ++L    ++  +A      + 
Sbjct: 675  NDTFGHHAGDGLLRSVSQRLLQSVRAGDTVSRLGGDEFTVLLGGAGSAADVAHLLDERLL 734

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +  P  +    + V  SIG A +         +++NA+ AMY AK  G N V+ F   
Sbjct: 735  PLMQEPHQIGGMTLQVACSIGIALYPDHGEDIETLMQNADAAMYRAKSGGRNLVKFFSPE 794

Query: 699  SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   R+ ++  L  +VE  EL+L Y P ++   ++++ +EAL++W HP  G +  S+
Sbjct: 795  MAESVRHRLELETHLRTSVERRELWLEYQPCVQAATDQLLSVEALLRWKHPHLGMVPPSQ 854

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQ 815
            F+ IAEE  +I  I  ++++   R I  WR     P I + IN++   L D+ +L + ++
Sbjct: 855  FIPIAEETRLIVPIGAWVIDEACRQIARWRAAGL-PEIRVSINLSVVQLRDDAQLVDKLR 913

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              ++     P  ++L  +E+V+M + +     +  +R +G+ L+LDDFGT  S LSYL  
Sbjct: 914  DGLTAHDVKPDSLELEITETVLMESVDHYLDTVNEIRALGVKLSLDDFGTGYSSLSYLHR 973

Query: 876  IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P D +K + + + G  +    +A++R+I+ +   +   ++A+ +    +   L R+GCD
Sbjct: 974  FPLDRLKIDRAFVNGRLDALADLAVIRAIVELGHELGLRVVAEGVEQAHEANALKRIGCD 1033

Query: 934  YIQDSHVASPLGFNSILKLLKER 956
             +Q  + A P+   ++ + L+ R
Sbjct: 1034 ELQGFYYARPMSNEALEQWLRTR 1056


>gi|292489731|ref|YP_003532621.1| heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora
           CFBP1430]
 gi|292898061|ref|YP_003537430.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291197909|emb|CBJ45010.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291555168|emb|CBA23365.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora
           CFBP1430]
          Length = 818

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 138/529 (26%), Positives = 242/529 (45%), Gaps = 14/529 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  + +        +LG +     G        +       F   L      + G  + E
Sbjct: 294 VSGEILLINNRAEQLLGGSQCEFIGKKAQ--ECMTPAMSAYFMQ-LSDAAQRKGGVQRNE 350

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            ++  +      +      +   +      + IA+D+T+Q+ +   I   A  DNLT +P
Sbjct: 351 RQLATSGGDRI-ISASASMVRGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 409

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F   LTT L     D      V+ +D+D +K +ND LG  VGD +L S+  R+  +
Sbjct: 410 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 468

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D LAR  G+ F I+L   ++  +    A  + ++I  P  +    +++  SIG   
Sbjct: 469 LRNRDTLARNGGDEFSIVLPGLSHPEEAEAMARRLIETIRPPFTVHGHNLSIGLSIGITL 528

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720
                 +   +L+ A++A+Y AK  G N  E F  +       R +I+ DL  A+   +L
Sbjct: 529 AQHGMTSPDYLLRCADMALYAAKRNGRNRFEHFTKAMGDTAQKRRIIENDLREAITYRQL 588

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI      EI+G EAL++W HP+ G I   EF+ IAEE  +I ++  + L    R
Sbjct: 589 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPIAEETGLIHSLGTYALYEACR 648

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  SW  +       + +N++     ++ L   ++  + ++  +P R+++  +ESV++ N
Sbjct: 649 EAASWPGEQ-----TVAVNLSPLQFKNSALIAVVEGALKESGLAPHRLEVEITESVLLDN 703

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
              +  +L  L+ +G+ + LDDFGT  S LSYL   PFD +K + S +    + R   AI
Sbjct: 704 TLANIDILRELKALGVQIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMQDSREALAI 763

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +R+I  M+++++  I A+ +      + L   GC   Q  +   P    
Sbjct: 764 IRAITGMSRSLDIQITAEGVESNEQFQRLKAEGCTLFQGYYFGRPQPPE 812



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 3/123 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V G  D  ++  D+    +          G     + G   ++  +    DR +  
Sbjct: 135 FRLLVEGINDYAIYMLDLNGLVLNWNAGACRAKGFTCNEIIGK--HFSCFYSEQDRRHNL 192

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +       G  +        D    W  + I  + N  G+++ +  I  D TE ++ 
Sbjct: 193 PDKNLQQATATGHFEDNGWRYRKDGSAFWAHVVIDAIRNDGGELIGFAKITRDCTEMREY 252

Query: 526 LEG 528
              
Sbjct: 253 ERQ 255



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 2/119 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           SD   Q LA       ++  D      + +       G     + G  RN+  +    D+
Sbjct: 5   SDVVYQLLARSEGNCAIYMLDPEGIVASWSLGAQHAKGYLPAEIIG--RNFSCFYSQQDQ 62

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              +      V    GR   +      D    W    I  + + NG +L Y  I  + T
Sbjct: 63  MLGKPRHGLQVAREAGRFATKGWRYRKDGSAFWAHEVIDAVFDDNGKLLGYAKITRNCT 121


>gi|320108512|ref|YP_004184102.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Terriglobus saanensis SP1PR4]
 gi|319927033|gb|ADV84108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 865

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 159/815 (19%), Positives = 327/815 (40%), Gaps = 40/815 (4%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFY-----MVNRSSMLIPTFAMAWVV 228
           YLW P+     V S  L   I +   ++   F  + +     +   S  +      A   
Sbjct: 48  YLWNPHLVALHVVSDLL---IFLSSMAVATTFAVMRFRYRKDIFMGSIFIAFGALFAACG 104

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF--MYLHWNRWHAKVGYIT 286
           L Y+     F   L +L     L+    + +  +    +       L   R   +     
Sbjct: 105 LTYLMDVILFWKPLYSLAGDIKLVAALAAVLTATILPFLAPRLGRLLAKARTSKQNEQYF 164

Query: 287 FSGIACIAILFCMSFYYPMVTASI--ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
            +     +  F +          I   R   A+             + G   + +     
Sbjct: 165 LAVSNSSSDSFYILQSVRNEAKKIVDFRFVFANSNGASLVSSTPAKLVGQLLSTIFPFNR 224

Query: 345 I------LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
                     +   G+ +     +++  +    +   ++ V          + A  +   
Sbjct: 225 TDGFFDRYTQVVHSGIPLTEEFPVESADVNATWLRHQIIKVDDGIAITATDISAKKHAEI 284

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457
            +          +  S   +   ++        P    +L   +  + G        +H 
Sbjct: 285 KLGKTLAFSRSLIDNSPFPILALELDGTIREINPAAERMLEYTNEELAGRATPL--ILHD 342

Query: 458 INDRDNFRTILDSFV--------------GYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            ++       L   +                R    + E+           + I +  ++
Sbjct: 343 PDEVARRAAHLSHELGMTVLPDISVFTVHPSRGLIDRQEWTYIRKGGSHVIVEISVTALT 402

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +    +  ++ +A DITE+K + E I   A  D+LTG+P+R    DR+   L  +  + +
Sbjct: 403 DELQKVNGWLCVAYDITERKHTEEYISHLAHHDSLTGLPSRALLNDRMELALKRAHRNSS 462

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  +M++DID +K++ND LG +VGD++L+S+ +R+   ++  D +AR+ G+ F +++  
Sbjct: 463 -KVALMMVDIDNFKRVNDSLGHSVGDNLLISVAQRLQHTIRETDTVARMGGDEFIVLIDD 521

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  +    A  +   +A P+ +   +  ++ASIG   +         +LKNA+ AMY 
Sbjct: 522 VRSDEEAEKIAEKLVAVMAAPVTINGEQHPISASIGLCLYPEGGGDLDALLKNADEAMYF 581

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N  + F      +   R  I+  L  A+  +E  +VY P I     ++ G+EAL
Sbjct: 582 AKAEGRNMYQIFSKDMASATAKRRTIENALDCALSRNEFDVVYQPQISFQSGKVTGIEAL 641

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+    GN++ +EF+ +AE+  +I  I  ++L    +D     ++     + I +N++
Sbjct: 642 IRWNSKLLGNVTPAEFIPVAEQTGLIVPIGEWVLRTACKDARRLEEKLGH-GLTIAVNLS 700

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L E +   ++++   P  ++L  +E++++ +  ++  +L R+R +G  + +D
Sbjct: 701 PRQFQQENLPEIVSDALAESGLEPKHLELEITENILVNDSRKAMRVLDRVRALGPRIAID 760

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DFGT  S +SY+     D +K + S +    TE   AI R+II +AK ++  ++A+ +  
Sbjct: 761 DFGTGFSSMSYILRFNVDRLKIDQSFIRNIMTEPNGAITRAIISLAKGLKINVVAEGVET 820

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L R GCD  Q    + P+ F  I +++  
Sbjct: 821 AEMSEILLREGCDEAQGYFYSRPVAFGEIEEVIHR 855


>gi|302555711|ref|ZP_07308053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Streptomyces viridochromogenes DSM 40736]
 gi|302473329|gb|EFL36422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Streptomyces viridochromogenes DSM 40736]
          Length = 714

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/575 (23%), Positives = 257/575 (44%), Gaps = 17/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A G  +Q + +   R      G+   +   D+  + +     +  + G++  ++    
Sbjct: 138 LKAQGVVAQALHASEARFRAVFEGAAIGIGMADLEGNILQVNGALLRMFGISEQAL--RS 195

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           RN + + H +D      + +  V   R     E      D    W  + +  + +++G  
Sbjct: 196 RNVMEWTHPDDAPQTWRLYEELVRGEREHYHLEKAFYRPDGTVLWTNLTVSLLRDADGAP 255

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D TE++     +   A  D LTG+PNR  F +RL   L         R  + 
Sbjct: 256 QYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTFFFERLEKAL---GAGKGQRFGLC 312

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSL 628
            +D+D +K +ND LG A GD +LV +  R+        +++ARL G+ F  +    +   
Sbjct: 313 YLDLDGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTQR 372

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++ + A  +  ++  PI++  RE+TV  SIG     + +   +E+L++A++ MY AK  G
Sbjct: 373 EVDELAARIMNALLAPISVDGRELTVRGSIGIVEGPAGERGPAEVLRSADITMYRAKSAG 432

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           GN  E     +         +   L  A+E  E ++ Y P++ L D  + G EAL++W H
Sbjct: 433 GNRFELADPEADARAITRHGLTTALPTALERGEFFIEYQPLVHLGDGSVRGAEALVRWLH 492

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM----PPIFILINIAS 802
           P+ G +    F+ +AE   +I  +  ++LE+  R    WR+         P+ I +N++ 
Sbjct: 493 PQHGVLGPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWRELHGGAEAVGPLRINVNLSP 552

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L    L +    ++ +T  +P  + L  +ES ++G  +     L RL ++G+ + LDD
Sbjct: 553 CQLTHPGLVQDTVDILERTGMAPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDD 612

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKD 917
           FGT  S L+ L  +P   +K + S              + I+  I+ +A +++  +  + 
Sbjct: 613 FGTGYSNLANLRRLPVSILKLDRSFTQSMQQFPADPVDLKIVEGIVSLAHSLDLAVTVEG 672

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +      ++L  +GCD  Q  + A P     + +L
Sbjct: 673 VETGAQAEQLRVLGCDTAQGWYYARPGPPERLHEL 707


>gi|196047149|ref|ZP_03114366.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|196022019|gb|EDX60709.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
          Length = 567

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPSEFIPIAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|119491612|ref|ZP_01623484.1| hypothetical protein L8106_03494 [Lyngbya sp. PCC 8106]
 gi|119453341|gb|EAW34505.1| hypothetical protein L8106_03494 [Lyngbya sp. PCC 8106]
          Length = 624

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 142/534 (26%), Positives = 248/534 (46%), Gaps = 8/534 (1%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V        + G +S  + G     L         +    L   +  R    + E    
Sbjct: 89  IVYINAAFTKLTGYSSPEIMGQTPQILQG--PRTDYHVLKRLKQALT-RGQVFEGEAINY 145

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D         I P+ N+ G I+ Y+ I  +I  Q             D LTG+ NR  
Sbjct: 146 RQDGSEFQNHCYIEPIFNNQGQIIYYLSIHREIIPQNPVQTQFSTRNNLDPLTGLANRSL 205

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            L RL   +D +    +    V+++D+D++K IND LG   GD +L ++ +R+   ++  
Sbjct: 206 LLQRLQQSIDQAQQHPDYLFAVLLLDLDRFKLINDSLGHQAGDHLLTTIGQRLESCIRPT 265

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++ARL G++F I+L    + LK++  A  +++ +  P+ L  +E+ ++AS+G    + S
Sbjct: 266 DMVARLGGDQFVILLDQVRDLLKVSQVAERIQQYLNKPLTLKNQEVFISASLGIVLSSPS 325

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
                +++++A+ A+  AK  G      F  +  R   +R+ ++ DL  A+++ +L + Y
Sbjct: 326 YDHPEDIIRDADTALQQAKAGGKACYTVFDQTMHRHALERLQLENDLRRAIDHHQLQVHY 385

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PII +    I G EAL++W HP+ G I  + F+ IAEE  +I+ I  ++L    +    
Sbjct: 386 QPIIAMDTGRITGFEALLRWYHPERGMIPPNYFIPIAEETGLIQVIGQWVLREACQRAKL 445

Query: 785 WRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+      P +F+ +N++   L    L E +  ++++T   P  +KL  +ES +    E 
Sbjct: 446 WQLTFPQSPSLFMSVNLSIHQLTYPNLVEIVSDILTETGCDPRYLKLEITESAIAQKAET 505

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRS 901
              +L +L  +GI L +DDFGT  S LS L Y P  T+K + S +   ++      I  +
Sbjct: 506 VIPILEQLTALGIQLCIDDFGTGYSSLSRLYYFPITTLKVDRSFVAAISQSNGTAKIASA 565

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           II +A ++   +IA+ +  E  +  L   GC   Q  H A P        LL  
Sbjct: 566 IINLAHSLGLEVIAEGVETEQQLTILRSWGCQLAQGYHWAKPENSQDTEALLAS 619


>gi|254498558|ref|ZP_05111279.1| sensory box protein [Legionella drancourtii LLAP12]
 gi|254352205|gb|EET11019.1| sensory box protein [Legionella drancourtii LLAP12]
          Length = 766

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 149/582 (25%), Positives = 294/582 (50%), Gaps = 16/582 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRD---RVTTTPDIAT 436
           IG  +I  V +    +Q    + E +    A+  S   V   DI +     +        
Sbjct: 187 IGNEIIGRVYSFRDITQKRMDEDELRIRERAIEASIHGVAIIDISKANFPIIYVNKAFER 246

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWM 495
           I G     + G     L   H  D ++ R  L +    R   ++ E +R    +++ +W 
Sbjct: 247 ITGYTEKQILGQNLIALRGRHTEDVNHKRITL-AIKEQREEIVEVEGYR---RNDESYWC 302

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            I + P+S+S+ ++  Y+ + NDIT++++  + ++  A  D+LT +PNR   +DR+   +
Sbjct: 303 EISVAPVSDSSANVKHYVCLINDITQRREMEKQLIQQATHDSLTDLPNRVLLIDRVDQAI 362

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +   +++    + +D+D++K IND LG ++GD +L +++ R+       D + RL G+
Sbjct: 363 LQARKKNSI-LAFLFLDLDRFKMINDTLGHSIGDKLLQAVSNRLLIATNDFDTVCRLGGD 421

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L    +  +    A  + ++I+ P  + + ++ +T SIG + +         ++K
Sbjct: 422 EFVILLQDIGSEKQAQQIADKILRTISKPFPIDQHDLQITGSIGISYFPKDGTDYESLMK 481

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A+L+MYHAK  G     ++   +++   + + +   L  +++  E +LVY P+I L + 
Sbjct: 482 SADLSMYHAKDSGRATYRTYDKEMNTRIINHMQLDNALRDSLKKDEFHLVYQPLINLAEN 541

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +IVG EAL++W     G +  S+F+ +AEE  +I  I +++L+     ++ W        
Sbjct: 542 KIVGFEALLRWHSHILGTVPPSDFIGMAEENGLILEIGMWVLKEACCQLVRWHK-LGYSK 600

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++S+ L  + L E ++  + +T  SP+ ++L  +ES+++ N + S   L  L+ 
Sbjct: 601 LTMAVNLSSRQLRQSHLPELIKKTLFETGLSPNYLELELTESLLVDNVKHSIETLYALKD 660

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G  L +DDFGT  S LSYL   P D +K + S ++     E   AI R+II +  ++  
Sbjct: 661 MGAKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFVSELINKENDAAIARAIINLGHSLNL 720

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++A+ +  E+  + + + GCDY Q  +   PL  N + + L
Sbjct: 721 DVLAEGVETELQCQFMLKHGCDYAQGYYFTPPLKANELNEFL 762



 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 44/177 (24%), Gaps = 23/177 (12%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
                      I   +   +          +  +          +  +GD +   +    
Sbjct: 50  WYHNQPEFQRTINAPLSDNINIKADDILEKNIELEKSLSLLRATLESTGDGIMMVNGHGQ 109

Query: 427 RVTTTPDIATILGLASGSMH-GPIRNWLPYI-----HIN----DRDNFRTILDSFVGYRR 476
            V        +  + S  +  G       YI     +      D +            + 
Sbjct: 110 VVDWNQKFVEMWRIPSYMLESGTESIGFEYILEQLTNPESVITDVEYLY---------KN 160

Query: 477 GRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              Q E  V    D +      + + + N   +I+  +    DIT+++   + +   
Sbjct: 161 PEWQGELPVLHFKDGRIFERFTQPQRIGN---EIIGRVYSFRDITQKRMDEDELRIR 214


>gi|49476849|ref|YP_034886.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52144683|ref|YP_082145.1| sensory box, GGDEF family protein [Bacillus cereus E33L]
 gi|196035756|ref|ZP_03103159.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218901822|ref|YP_002449656.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|254722098|ref|ZP_05183887.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|49328405|gb|AAT59051.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51978152|gb|AAU19702.1| sensory box, GGDEF family protein [Bacillus cereus E33L]
 gi|195991723|gb|EDX55688.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218539049|gb|ACK91447.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 567

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|229089690|ref|ZP_04220951.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228693589|gb|EEL47291.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 569

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCRTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|288940811|ref|YP_003443051.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Allochromatium vinosum DSM
            180]
 gi|288896183|gb|ADC62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Allochromatium vinosum DSM 180]
          Length = 1147

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/614 (21%), Positives = 263/614 (42%), Gaps = 16/614 (2%)

Query: 351  FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
             IG    +   +     +        L +I     +   V+             E+  L 
Sbjct: 533  IIGHAGQVLGTVAIYATRVMEPSPADLEMIESAAELAAIVIERDRAENATRQAEEKARLL 592

Query: 411  VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT---- 466
            +  + + ++  D+        P  A +LG    ++ G   +  P IH +  +        
Sbjct: 593  LESTTEGIFGLDLEGRVTFINPAAANMLGYEPETLIGQPVH--PLIHHSRANGLPLPPEC 650

Query: 467  --ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              IL +    +      E  +   D           P+   +  I   +   +DI+ +++
Sbjct: 651  CPILATLQQGQDCHATSEV-LWRRDGSCFPAEYWATPVR-RDHRIEGAVVTFHDISARQR 708

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +   I   AF D+LTG+PNR  F + L   L     DD  R  + ++D+D +K +ND LG
Sbjct: 709  AEAEIQHLAFHDSLTGLPNRLLFKEELGQALAALRRDDQ-RFALHMLDLDHFKDVNDSLG 767

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              VGD++L ++  R+  + +  D+LAR  G+ F ++          A  A  + ++    
Sbjct: 768  HPVGDELLRAVAERLTAITRGTDVLARFGGDEFALLQSKIGEIGDAAALATKIIEAFGQA 827

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
              +    I +  SIG      +     +++  A++A+Y AK  G      F  S  +  R
Sbjct: 828  FWIDGNRIDINTSIGILIADQACHDVDDIITRADVALYKAKEAGRGTHAFFADSMTQQLR 887

Query: 705  VMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
              ++   +L  A++N EL++ Y P   L    +VG+EAL++W HP+ G    + F+ + E
Sbjct: 888  REMEIARELIQAIQNDELFIDYQPQFDLDSGRLVGMEALVRWHHPREGVRQPAAFLPVTE 947

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            +  +I+ ++ ++L+     I  W D+       + +N+ ++ + D +  + + A++ +T 
Sbjct: 948  KRGLIRPLSDWVLKAACCQIRDWSDRGLEFG-RVAVNLCAQQVGDPDFGDNILAVLEQTG 1006

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  ++L F+E+V++    R++  + RL ++GI   +DDFGT  S + YL     D +K
Sbjct: 1007 ARPEHLELEFTETVLIAADARTQADIARLSELGIHFAIDDFGTGFSSMQYLRKFRTDKIK 1066

Query: 883  FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +   +   T+      I+++ I +   +    IA+ +  E   + L R GC  +Q    
Sbjct: 1067 IDREFIQDVTQDAGDAEIVKATIALGTALGLITIAEGVETEEQAEFLRRHGCRQVQGYLY 1126

Query: 941  ASPLGFNSILKLLK 954
              P     I + L+
Sbjct: 1127 GRPQSPEDIERQLR 1140



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            I       +       Q +    +R    V  S   + + D+        P  A +LGL
Sbjct: 270 TIAQAASTMIAQRRQAEQALRESEQRFRTLVEVSQYYIQEIDVEGCIQYANPASAHLLGL 329

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               + G   + L  +  ++R      L +F   +     Y  R   A+ Q   + +   
Sbjct: 330 EPKDLIGRNVSML--LPADERATLLKDLRTFASEQPTPSAYYNRNLTANGQTIDVEVGWN 387

Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526
              + +G +  +I IA D+T+ +++ 
Sbjct: 388 YKRDESGQVTGFISIAKDVTDYQRAR 413


>gi|302551644|ref|ZP_07303986.1| sensory box/GGDEF family protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302469262|gb|EFL32355.1| sensory box/GGDEF family protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 632

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 133/570 (23%), Positives = 266/570 (46%), Gaps = 28/570 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  +   +   D     V+    +AT+LG +   + G +   L  +  +       
Sbjct: 54  YRSVFTAAPLAMAVVDREGTVVSANDALATLLGTSPDELDGSVAADLVDLTSD--TRTWH 111

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +  R+ RL+   R++  D    W+ + + P+   +      +    DI+ +++  
Sbjct: 112 AYGEVLRGRQSRLRCTRRLKHPDGHSLWVQVTVAPLPAED---RGVLLSVADISGRRELQ 168

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKINDVLG 584
             +      D +T +PNR  F +RL+  L+  +       R  +  +D+D +K IND LG
Sbjct: 169 ARLRHLQMHDPVTRLPNRTLFFERLSAALEAESYEQSGTGRIGLCYLDLDGFKAINDTLG 228

Query: 585 IAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAM 637
             VGD +L ++  R+               ++ARL G+ F +++     + ++A+ A ++
Sbjct: 229 HRVGDRLLAAVAERLTRCADASGQSRTTAPLVARLGGDEFALLVEDSTGTEQLAELAESV 288

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            ++I  P ++  + ++V+ASIG     ++  T++ ++++A+  +Y AK  G +    F  
Sbjct: 289 LEAIQDPFDISGQRLSVSASIGVVERHAAGTTATALVQDADTTLYWAKADGKSRWTLFDP 348

Query: 698 SSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      +   L  A++  E  L Y P++ + D+ + G+EALI+W+HP++G ++ +
Sbjct: 349 ERNAHRMTRQALASTLRPAIDRGEFQLEYQPLVGMEDDRLHGVEALIRWNHPQFGVLTPN 408

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGM 814
            F+ +AEE   I  +  ++L    R    W+ D  + PPIF+ +N+A + + D++L   +
Sbjct: 409 RFIGLAEEDGSIVPLGRWVLRTACRQARRWQIDHPDDPPIFVSVNVAVRQVWDSDLVADV 468

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +++T  +P  ++L  +ES VMG+  R    L  L  +G+ + +DDFGT  S L+YL 
Sbjct: 469 AETLAETGLAPGLLQLELTESAVMGSAGRPLQALKALSDMGVRIAIDDFGTGYSNLAYLS 528

Query: 875 YIPFDTVKFNGSLMTG-----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
            +P   +K +GS + G                  ++ ++I +A  +  T+ A+ +     
Sbjct: 529 RLPVSVLKLDGSFVRGFQYDDRDTAARPNPADEVVVEAMIQLAHRLGLTVTAECVETSAQ 588

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              L  +GCD  Q    + P+  + I +LL
Sbjct: 589 ATRLRSIGCDTGQGWLYSRPVPPDRISELL 618


>gi|148256520|ref|YP_001241105.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146408693|gb|ABQ37199.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 822

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/562 (24%), Positives = 251/562 (44%), Gaps = 18/562 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +   D      +     +    G +   +     N      
Sbjct: 265 ALKRREASFRLLFDANPMPMCILDGKTAQILNVNDAMLRHYGYSRADLLC--MNVWDLWP 322

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +       L             + R   AD     ++   R + N +G     +    
Sbjct: 323 PGEWGAVDDALTRLADG--DLFHRDCRHCKADGSEIEVLTYGREI-NYDGR-DGVLMAIV 378

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE++++   I   A  D LTG+PNR+ F  RL   LD +A        V+ ID+D +K
Sbjct: 379 DITERRRAEARIAYMAHHDGLTGLPNREFFQQRLAQELDEAA-SGARPLAVLCIDLDLFK 437

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G  +GD +L ++  R+ + +   ++ ARL G+ F  I+ S++ +    +FA  +
Sbjct: 438 TVNDSFGHPMGDRLLQAVAGRLKQQMHGGNLAARLGGDEFAAIV-SQDGADGSGEFAARL 496

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++ P ++   E+ + ASIG A       +  E++KNA++A+Y AK  GG     F  
Sbjct: 497 ISVLSAPYDIDGNELVIGASIGIALSPLDGTSCEELMKNADMALYRAKQHGGRVHRFFER 556

Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   R  ++ DL  A   +E  L Y P+I +    I G E L++W HP  G IS +
Sbjct: 557 EMDLQAQKRRDMEHDLRRAFAQAEFELHYQPLIDVASNIISGFECLLRWRHPDKGMISPA 616

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE++ +I  +  ++L     +  +W D      I + +N+++       L + + 
Sbjct: 617 EFIPVAEDIGLIVPLGEWVLREACHEAATWPD-----GIKVAVNLSAVQFRSRNLVQVVM 671

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++++  +P R++L  +ES+++   + +   L +LR++G+ +++DDFGT  S LSYL  
Sbjct: 672 QALAQSSLAPERLELEITESILLAETDANLATLHQLRQLGVRISMDDFGTGYSSLSYLRS 731

Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +    ++    AI+R+I  + +++     A+ +     +  L   GC+
Sbjct: 732 FPFDKIKIDRSFVKDLAQRSDCLAIVRAISGLGRSLNIITTAEGVETSEQLDWLRAEGCN 791

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q    ++      I  LL  
Sbjct: 792 QVQGYLFSAARPAAEIAGLLAR 813


>gi|304411858|ref|ZP_07393469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|307303374|ref|ZP_07583129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
 gi|304349718|gb|EFM14125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS183]
 gi|306913734|gb|EFN44156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica BA175]
          Length = 1419

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 859  QKEEQLKLFEKAIENISEGMFILDGEYRFVEVNEACCKISLRNRTDFIGNVLTF--DLYP 916

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 F T + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 917  E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ +++           +MV+D+D +K+
Sbjct: 973  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  +  RI  LL     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKGSDISASAAIANRII 1087

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            + +     +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   +++    + Y P + L   +I G+EAL++ +HP  G I  ++
Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1207

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFNG-RVAVNLSSRQFALPDIQQRIES 1266

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1386

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +       LL+E
Sbjct: 1387 IQGYIFSKAIKETEFTLLLQE 1407



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 2/154 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           V+I I I F +++ +L      + I    ER  L++ GSGD +WDWDI    +  +    
Sbjct: 711 VVITIFISFVIVKAILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             L            +    IH  D++  R  L+          +  +RV+  D+ + W+
Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
           + R + +  +   + LR  G   +I++ K+  E 
Sbjct: 830 LDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 863


>gi|167031433|ref|YP_001666664.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida GB-1]
 gi|166857921|gb|ABY96328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida GB-1]
          Length = 1247

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 274/580 (47%), Gaps = 12/580 (2%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + G   +  +         +    +  +     + + V   DI +         + I G 
Sbjct: 658  ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQHISAVNRAFSEITGY 717

Query: 441  AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   ++    R      H  D   +  +         G  Q E   +  + + +   + I
Sbjct: 718  SEIEALGQTPRLLASGQH--DSAFYAAMWHQLTDE--GHWQGEIYNKRKNGELYPSWLTI 773

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + NS  +I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL  +L  + 
Sbjct: 774  SAVRNSEREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRALFENRLQAVLTCAQ 833

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +  +  V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I
Sbjct: 834  VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +     +  A  +    A P    E E   +ASIG + +       + +++NA+ 
Sbjct: 893  LLPGLHKPSDASTIANKLLACFAAPFQAGEHEFFTSASIGISLYPQDGTDVATLIRNADA 952

Query: 680  AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY +K +G N VE++     +  S+R+ ++ +L  AVE +E+ L + P + L  +++VG
Sbjct: 953  AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQKLVG 1012

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP +G +    F+ +AEE   I  +  ++LE+  R + +W+     P   + 
Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-QPFGPLS 1071

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN+A   L    L   ++ L+         ++L  +E+ +M   E +  +L +L+K+G+ 
Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHYQLKAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA
Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
            + +  +   + L   GC+ IQ   V+ PL  +      L+
Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPDEFAAAFLR 1231



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +    L+  ++ +VI I   +   +       Q + S        V     I W+
Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D         +P    +LG            W   +H  D    +   DS     R   
Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD Q  W+   +  +   +G      G+  DI+E K + +
Sbjct: 385 SLDYRVIRADGQPLWVRNIVSMI--EHGHQPVMRGLMIDISETKHTED 430



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424
                      L         ++ +       Q + +  E+ + A   S D  +      
Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              +        + G     ++     +   ++ +N+R      L+           +  
Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVEQLNR----DGFVRDFTC 637

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +R +D Q     +  RP+  +   +   + IA DITE+    E +   A 
Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686


>gi|226946907|ref|YP_002801980.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
 gi|226721834|gb|ACO81005.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
          Length = 553

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 135/548 (24%), Positives = 258/548 (47%), Gaps = 13/548 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
               + + V   D  +  V        I G     + G   + L    H  D + +R + 
Sbjct: 1   MFDSTLEGVLVTDANQRIVHINRAFTRITGYTEAEVLGRAPSLLKSGRH--DEEFYRKMW 58

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            +    +R     E   R    + +     IR + N  G I  Y+ + +D++  K+S   
Sbjct: 59  QAL--GQRLEWNGEIWNRRKSGEVYPQWQSIRAIRNEEGGISHYVAVFSDLSMIKRSQAE 116

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LTG+PNR  F +R+   L+ +   +  +  V+++D+D +K +N+ LG  +G
Sbjct: 117 LDYLAHYDPLTGLPNRLLFKERVQHALERA-RLEKGQGAVLLLDLDHFKHVNESLGHKLG 175

Query: 589 DDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           D +L S+++++   +++     A L G+ FG++  +  +  + A  A  +  ++  PI L
Sbjct: 176 DQLLKSVSQQLIYHVVRQGMTFAHLGGDEFGLLCENC-SPQQAATLATTLLDTLNQPIYL 234

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
               + + AS+G + +     +  ++L+NA+ A++ AK  G      +           +
Sbjct: 235 EHHRLLIGASLGISLFPGDAQSVEQVLRNADSALHKAKSDGRATYAFYSQELTAYAHQRV 294

Query: 708 K--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +    L  A+E+ EL + Y PI  L   ++V LEAL++W HP+ G +   EF+ +AEE  
Sbjct: 295 ELIAALRHALEHGELRVHYQPIHDLRSGQLVSLEALVRWQHPERGLVPPGEFIPVAEENG 354

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I+L+++E+  R +  W    +    F+ +N++++      L   +  +++ +    
Sbjct: 355 LIGTIDLWVMEQACRQMRRWLKAGHKLQ-FVAVNVSTRLFSRGRLDLQVAEILACSGLEA 413

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES VM +P+ +R  L RLR +G+ L +DDFGT  S L  L  +P D +K + 
Sbjct: 414 RHLELEITESAVMDDPDSARRQLQRLRDLGVRLAIDDFGTGHSSLQRLKSMPVDKLKIDR 473

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             + G     K  AI RS+I +A+++  +++A+ I      + L R  C   Q      P
Sbjct: 474 GFVAGLPSDSKDAAIARSVIVLAQSLGLSVLAEGIERPEQAEFLERNQCFLGQGYLFGRP 533

Query: 944 LGFNSILK 951
                + +
Sbjct: 534 QPAEELFR 541


>gi|126725733|ref|ZP_01741575.1| sensory box protein [Rhodobacterales bacterium HTCC2150]
 gi|126704937|gb|EBA04028.1| sensory box protein [Rhodobacterales bacterium HTCC2150]
          Length = 908

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/600 (24%), Positives = 256/600 (42%), Gaps = 21/600 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++ +   + + V+   +    + +     S     + D +   D        +     I
Sbjct: 314 EMLRLTTKLTEEVVERKHAEALLRNSMASLSATTETALDAIVQMDKKGKITKWSNKAEEI 373

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494
            G       G        + +  R+   + +  F+    G +   + E      +     
Sbjct: 374 FGWLQAEAIGKNLG-ETIVPLQYREAHLSGMKHFLATGEGPVLNRRIEITGLHRNGHEFP 432

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I P    NG+   +     DI+E K + + I   AF D LTG+PNR+    +L   
Sbjct: 433 IELSIAPFK-MNGE-YAFSAFMRDISEAKAAEDEINKLAFYDALTGLPNRRMLYGKLEDE 490

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  S     L   +M++D+D +K++ND LG A GD +LV   RRI   ++  D +ARL G
Sbjct: 491 MKRSDRS-GLPVVLMLLDLDFFKEVNDKLGHAQGDRLLVEAARRITACVRETDTVARLGG 549

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F IIL +  +  K +  A  + KS+A P  L E+   ++ S+G A + +    +  ++
Sbjct: 550 DEFMIILSNMKDVTKASHIAENIIKSLAAPFYLSEKINFISGSLGVALYPNDAQNADNLI 609

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+ AMY AK  G N    F ++       R+ +  DL  A+   +  + Y PI+ L  
Sbjct: 610 VNADQAMYMAKDAGRNGFSYFTLALQEAAQTRLSLISDLRTALPGKQFAVHYQPIVELAT 669

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +I   EAL++W HP+ G +S ++F+ +AEE  +I  I  ++     R++  WR+    P
Sbjct: 670 GKIYKAEALLRWQHPERGPVSPADFIPVAEEAGLIHEIGDWVFHEAIRELAHWRELF-EP 728

Query: 793 PIFILINIASKDLLD---------NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            + I +N++     +             +     ++        +    +E V++     
Sbjct: 729 ELQISVNVSPVQFRESQGSDRRSLEGFKKNWLNALNGLGLPGESVVFEITEGVLVNAEAS 788

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
               L  +R  G+ + LDDFGT  S LSYL     D +K + S +          A+  +
Sbjct: 789 VTEKLIAMRDAGVQVALDDFGTGYSSLSYLKKFDIDYLKIDQSFVQNLQDDTDNQALCEA 848

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           II MA  +   +IA+ +  E     L   GCDY Q    +  +  +    LLKE+  + +
Sbjct: 849 IIVMAHKLGLKVIAEGVETEPQRDLLVGFGCDYAQGWLYSKAVPADEFEVLLKEQGKVAQ 908


>gi|228913316|ref|ZP_04076950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925816|ref|ZP_04088900.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228932055|ref|ZP_04094947.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228944380|ref|ZP_04106753.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229120277|ref|ZP_04249528.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228663318|gb|EEL18907.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228815282|gb|EEM61530.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228827638|gb|EEM73380.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228833831|gb|EEM79384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228846367|gb|EEM91385.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 569

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|150390997|ref|YP_001321046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Alkaliphilus metalliredigens QYMF]
 gi|149950859|gb|ABR49387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Alkaliphilus metalliredigens QYMF]
          Length = 1242

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 246/567 (43%), Gaps = 9/567 (1%)

Query: 394  GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                + I    +R  + +  S D+             +P +  ILG     M G      
Sbjct: 524  QGIQENINHIQKRFQVLIRDSSDVFEIVSPDGTIEYISPAVEKILGYQPKEMEGRNLMEF 583

Query: 454  PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +    ++     +    +      ++ E        +  ++ + +         I   +
Sbjct: 584  AW--EIEKPKLEKMFKVALSEPNKNIKREISAETKLGKRIYVELTMNNQL-EEPSIKGIV 640

Query: 514  GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
                D+TE+ ++ + +   A  D +T +PNR  F  ++      +         VM++DI
Sbjct: 641  LNWRDVTERVEAQKKMNHIATHDQMTQLPNRLHFEKKIEYQCQEAKE-KGTTFAVMMLDI 699

Query: 574  DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            D +K IND LG+  GD ++    RR+ + L     + R SG++FGI++ +  +     + 
Sbjct: 700  DDFKYINDALGMGFGDQLITQAARRLKDFLGETRCICRYSGDQFGILIYNLKDIEAYKNI 759

Query: 634  AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            A+ +    +    +   EI +T S+G A +      +  ++K+  +A++ AK  G N  E
Sbjct: 760  AMKIIDLFSSSFKIDPYEIYITMSVGVAIYPDDGQETQSLIKHGNIALFRAKEAGKNRYE 819

Query: 694  SFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             +       +     +K DL  A++N+E  + Y P + L   EI+G EALI+W+HP WG 
Sbjct: 820  MYSPKMDVKNYKAFTLKNDLRRAIKNNEFKVYYQPQVNLQTSEIIGAEALIRWEHPTWGL 879

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            +S  EF+ +AEE   I  +  ++L ++      W      P I + +N +       ++ 
Sbjct: 880  VSPKEFISLAEETGFIITLGNWILRQVCETYQKWLKDGL-PAIKVSVNYSGIQFFQKDIV 938

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            E ++  I +    P  + +  +E+V+M   ++    +  L+++GI + +DDFG   S L+
Sbjct: 939  ENIKNTIHEFQLDPHFLVMEITETVLMNQSQQVSADIQSLQELGIKVAIDDFGAGFSSLT 998

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL     D +K +   + G    E    I+ ++I +AK++   ++A+ +     +  L +
Sbjct: 999  YLNSFNVDILKIDRFFIKGIPLDETSNRIIEAVINLAKDLRIRLVAEGVETWDQLSYLRK 1058

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKER 956
            + C   Q    + P+      KLL ++
Sbjct: 1059 LNCTVGQGFLYSRPVPQEDFEKLLAKK 1085



 Score = 98.5 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 2/152 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V++     IQ +         +    +  + A   +    W+ D++R++ T + +   I 
Sbjct: 375 VVIGILGTIQDITENKLLKTQLEKSYKNLAEAQRLAKMGSWEMDVIRNKNTWSEEYYHIY 434

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+ +    G    +L ++H  DR+    IL      +      EFR+   D     +   
Sbjct: 435 GITNKEYDGSYEAFLNFVHPEDRELIEDILAH--PPQVQPFDMEFRIIRPDGSVRHIYQV 492

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +    +  G +    GI  DITE+K  ++ + 
Sbjct: 493 VEMTFDLEGHLTYRRGIIQDITERKALVKKMQ 524



 Score = 86.9 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +G   + +D+  + ++ + ++  I G+          N +  IH  D+D  +      + 
Sbjct: 283 AGVGSYRYDLGNEELSWSEEVYRIFGVDPQKFTKRFENIITLIHPEDQDTVQNSTAGCLK 342

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +    + E+R+   D     +I +  P+ + +  ++  +G   DITE K     + 
Sbjct: 343 GKA--YEIEYRIIGLDGSEKCVISKGEPIFDDDQVVIGILGTIQDITENKLLKTQLE 397



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
               W +D   + +  + ++  I    +      I +   +IH  D+   R  ++  +  
Sbjct: 157 SIGSWTYDFQSEELFGSQEVYDIFQRTTEEFDNKIESVYTFIHPEDQQVVRKSMEKAL-- 214

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           R      E+R+     +  ++  R   + +     ++ IG   DIT +K
Sbjct: 215 RGNDHDQEYRIMVPGGKEKYIHSRAEVLFDDMNRPIKMIGTIQDITGRK 263


>gi|330899511|gb|EGH30930.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 596

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/585 (23%), Positives = 265/585 (45%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 13  MLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 72

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 73  CQLLGYTAEELSHKTPAELG---ETSMEKLEVVYDRIIAGKGPSEPLETQIRDKSG--RD 127

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 128 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 187

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +  V+ I++D +K IN+  G  +GD+VL+ ++RR+   L   D L R+ G
Sbjct: 188 MTQAAIS-RWKLAVLTINLDDFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 246

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P ++  + + +TASIG A +      S E++
Sbjct: 247 DQFAMILMLRDGQAGTRQTLERIRNALRVPFHIEGQSLVMTASIGIALYPEDGEDSRELI 306

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  A+  G ++   +          R+ ++  L  AV N    +VY P + L +
Sbjct: 307 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 366

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 367 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 425

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + + ++ L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 426 SFQVAVNISGQQISNSSLVADIRQALEKHNVAPHWLEVELTESSLMENTAHTIATLGALR 485

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
              +S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 486 ASRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 545

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD  Q   ++ PL    +   L+ 
Sbjct: 546 LLVIAEGVETPEQLAFLRENHCDQSQGYLISKPLPLEELETFLRS 590


>gi|56476210|ref|YP_157799.1| phospholipase A2 [Aromatoleum aromaticum EbN1]
 gi|56312253|emb|CAI06898.1| predicted phospholipase A2 [Aromatoleum aromaticum EbN1]
          Length = 1043

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 136/592 (22%), Positives = 245/592 (41%), Gaps = 16/592 (2%)

Query: 372  VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            +   ++  I      I  V      S  +     +    +  S D  W  +         
Sbjct: 458  LITEMVADIGYALDRIDLVAEQARTSAALRESEVKYRKVLETSQDGFWLLNRDWLLTEVN 517

Query: 432  PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                   G     + G     L     +D       + S V         E R R    +
Sbjct: 518  DAYIEFSGYRREELVGMHVTQLD---ASDASEMARHIASAVEDGNATF--ETRHRTKSGE 572

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
               + +    ++   G    +     D++ + ++ E I   +  D LTG+PN   F D L
Sbjct: 573  LKPVEVS---VTFDAGRAACFSLFVRDLSRRDEAQEHIRRLSHFDTLTGLPNSSLFADLL 629

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               +  +        +VM IDID ++ IND LG  +GD +LV +  R    L   + LAR
Sbjct: 630  RQAIGNAQRSGE-SLSVMYIDIDHFQHINDTLGHRIGDRLLVEIAGRFRNALCAENTLAR 688

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            L G+ F I+L         A  A  +  + A P+ + + E+ VT SIG A + +      
Sbjct: 689  LGGDEFLILLPHAQ-VECAAHVAEKLIVAAADPMLIEDHEMLVTPSIGIAMYPADGEDFE 747

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIR 729
             +L+ A+ A   AK  G N    F           + ++  L  A+E +EL L Y P I 
Sbjct: 748  TLLQRADTATNRAKSDGRNTYRFFAPEMQLRSAHTLRLETALRRALERNELVLHYQPQID 807

Query: 730  -LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
             +    + G+EALI+W HP++G +S +EF+ IAE   +I  I  ++++     + +W+  
Sbjct: 808  LVDFGRVAGVEALIRWQHPEFGLVSPAEFIPIAESTGLILPIGEWVMQTALLQLKAWQLA 867

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                   + +N+++       L   +  ++++     S ++L  +ES +M +P  +  ++
Sbjct: 868  GLQLG-QVGVNLSAHQFRQQNLPATVARILAEAGLPASCLELELTESAMMDDPVAAVAMM 926

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
              L + G+ +++DDFGT  S L+YL     D +K + S +       +  AI+ +I+ +A
Sbjct: 927  DALHRDGVRMSIDDFGTGYSSLNYLKRFRIDKLKIDQSFVRDLTQDPEGEAIVEAIVSLA 986

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + +    IA+ +     +  L   GC  +Q    + PL  + +   L+   P
Sbjct: 987  RTLRFRTIAEGVEKPEQLAFLRASGCQEVQGYLFSRPLPPDELAVWLRAWRP 1038


>gi|226944712|ref|YP_002799785.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ]
 gi|226719639|gb|ACO78810.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii DJ]
          Length = 1104

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 139/616 (22%), Positives = 269/616 (43%), Gaps = 13/616 (2%)

Query: 344  WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
            W  I                                  I   V+  +    +  + +  +
Sbjct: 493  WAAILGSTATGTFQFLG-AHGPFDAELRFVTFTQEEREIHTFVLNDISERKHTERQLRQE 551

Query: 404  GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             +     +     + + +D          ++  I G  S  + G            D+  
Sbjct: 552  RDYADAVLNSLPGVFYHYDENVRLRRWNRNLERITGYKSEELAGVEPTIF--FADEDKAL 609

Query: 464  FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              + +          ++ ++ +   D Q    +         +G    ++G+  DI+E+K
Sbjct: 610  VASRIGEVFEKGESSVEADYLL--KDGQRIPYLFTG-VRFEYDGR-RGFVGVGYDISERK 665

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            ++ + I   A  D LT +PNR    +R+   +  +     L    + +D+D++K +ND  
Sbjct: 666  RAEQRIRHLAMHDGLTDLPNRNLIQERIEQAIVRARRGGRLLAL-LYLDLDRFKVLNDGY 724

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G   GD VL + + R+ +L++  D +ARL G+ F I+L            A  +  S+  
Sbjct: 725  GHLFGDAVLKTASERLLKLVREGDTVARLGGDEFLILLADLEQPADADAVARKIVGSLDC 784

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            PI + ER+I ++ SIG + +     T+ E++ NA++AMY AK  G N  + F  +     
Sbjct: 785  PIVVQERKIHLSGSIGVSLFPRDGETADELIDNADMAMYRAKELGRNTYQFFTRAMSLET 844

Query: 704  RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +    ++  L  A    +L LVY P + L +  I G EAL++W HP+ G +S   F+ IA
Sbjct: 845  QRRVDLEIKLRGAATAGQLQLVYQPKVSLENGGISGCEALLRWHHPELGIVSPEHFIPIA 904

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            E+  +I  I  ++L        +W D    PP+ + +N++++  L  ++   +   + +T
Sbjct: 905  EDSGLIVPIGDWVLRTACMQARAWMDAGL-PPVCVAVNVSTRQFLQQDVVAWVTRTLRET 963

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                +R++L  +ES++  + E+    + +L+ IG+ L++DDFGT  S L+YL     DT+
Sbjct: 964  GLPAARLELELTESLIARDIEKVTATIDQLKDIGVKLSIDDFGTGYSSLNYLKRFRVDTL 1023

Query: 882  KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K + S +       +   I+ ++I +A N++  +IA+ +  E   + L   GCD IQ  +
Sbjct: 1024 KIDQSFVRNMLTEMEDETIVLAVIALAHNLKFKVIAEGVETEQHSRFLCSNGCDEIQGHY 1083

Query: 940  VASPLGFNSILKLLKE 955
             + P+   +   +L+ 
Sbjct: 1084 FSEPVTAEAFETMLRA 1099



 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 61/268 (22%), Gaps = 39/268 (14%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYY--PMVTASIARITLASIVLYYTYFIIYHGMKGY 334
           RW          GI+ + +    + +   P+       + +   +      +     + +
Sbjct: 311 RWVGARRLDLKGGISWLVVASRTAPFIEAPLRHQLFQVLGMGLAIALGLVLVSVRTARRF 370

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            R +  +              +      D +    + +                  +A  
Sbjct: 371 GRPLAELERR-----------VTGIGLHDLNASATSPLSSADDFRETQLLGKALDRMAAA 419

Query: 395 YFSQGIFSDGERQSLAVLG-----SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
              Q    + +  SLA+ G     S   ++  D     +        + G     + G  
Sbjct: 420 VRQQVRAKEQQVASLALKGALFDFSSAAIFSLDRQLKVIEWNAAAERLFGQERDGVLGRA 479

Query: 450 RNWLPYIH--INDRDNFR---TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
              +        D                   G    E R      +   +         
Sbjct: 480 AGEVVTAPNGPADWAAILGSTATGTFQFLGAHGPFDAELRFVTFTQEEREIHT------- 532

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN 532
                     + NDI+E+K +   +   
Sbjct: 533 ---------FVLNDISERKHTERQLRQE 551


>gi|239992966|ref|ZP_04713490.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alteromonas macleodii ATCC 27126]
          Length = 701

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 127/591 (21%), Positives = 261/591 (44%), Gaps = 9/591 (1%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           D I   +  GL  + +    T+          +  + ++ ++ ++ +    D V   +  
Sbjct: 103 DFISKPIDIGLCQMRVRNHLTIQDQKTKLARVNHELEAEKKQLAITLKSIADGVISINAA 162

Query: 425 RDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYE 482
            D     P    + G +     G      +     +  +      L +    R   + Y 
Sbjct: 163 GDVTFINPVAQRLTGYSETEALGKPIDEVMNLRDASTNERLLNPALYALEVMRPVAMSYN 222

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             + +  NQ   +     P+ + +G +   + +  D++E  +    +      D LTG+P
Sbjct: 223 ATLVSRHNQVFRVEDTASPIIDEDGHLSGAVIVFQDVSEAIEMAVKMTHLTNHDQLTGLP 282

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DR+   +    T       +++IDID +K +ND LG  VGD ++ S+ +R+ ++
Sbjct: 283 NRVLLHDRVVQAITRCFTSKQ-SIALLLIDIDNFKYLNDSLGHQVGDYIIASIAKRLAKV 341

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           +     LAR+ G+ F  +L    +       A+A  ++   PI++  +   ++ SIG + 
Sbjct: 342 VGESATLARVGGDEFACLLTEIGSGYSADSIAMACLQAGREPIDIDGKAHQLSLSIGISL 401

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSEL 720
           +    + + EM+++A+ AMY +K +G +    F      +    ++ +  L  A+EN  L
Sbjct: 402 YPQDAVNAEEMMRHADSAMYRSKSKGKDTFSFFSKDLQHAMHHRVEMEVKLRNAIENDSL 461

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            +   P     D  ++  E+L++        I   EF+ +AEE  +I  +   +L++   
Sbjct: 462 AIYLQPKYNFDDSAVLSAESLVRMFDENGKVIGPDEFIPLAEETGLIHQLGKQVLQKSCE 521

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +    +        + +N+A+K L +    + +  +I++   + S I+L  +ES +M +
Sbjct: 522 FVARCNELG--QDFKVAVNVAAKQLSNPGFAKEVAEIINEAGIAASSIELEVTESALMHD 579

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--I 898
            E++R +L  L  +G+++ LDDFGT  S LSYL   P + +K + S +    +++ A  I
Sbjct: 580 FEQTRDILNDLASLGVTIALDDFGTGYSSLSYLRQFPLNVLKIDRSFVIDMDKEQQAHDI 639

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + +I+ +A ++E TI+A+ I  +     L  +GC   Q   +  P+     
Sbjct: 640 VTAIVHLALSLELTIVAEGIETQSHFAALKALGCHLGQGYFMCRPMAMADF 690


>gi|146282936|ref|YP_001173089.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145571141|gb|ABP80247.1| sensory box protein [Pseudomonas stutzeri A1501]
          Length = 855

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 20/566 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    ER       + D +W+ D        +     I G       G    
Sbjct: 299 RLASSRSALAESEERFRDVAEAASDWIWETDEQARLTFLSNRFRQITGHEPAQWLGRP-- 356

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L  + I D    +  L++        L+  +R  AAD    +  +  R +   +G +L 
Sbjct: 357 LLELL-ITDSAALQNWLEA---PHSAPLRSSYR--AADGCERYCRLAARTIQ-HDGKLLG 409

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G A+D+TE+ ++   +   +  D LTG+PNR    D L    +L++       T++ I
Sbjct: 410 YRGTASDVTEETRAQARVQYLSQHDALTGLPNRSRLRDYLEQ--NLASLRSGSTLTLLYI 467

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG A GD+VL+ +  R+ E  +  D++ARL G+ F ++L        I 
Sbjct: 468 DLDRFKPVNDTLGHAAGDEVLIGVASRLRERTRDGDLVARLGGDEFVVVLHRMGEDNDID 527

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +  +++ P    +++I++ ASIG A   +    ++E+L+ A++A+Y AK  G   
Sbjct: 528 RLCNRIIDALSAPFIYEDQQISIGASIGVALAPTDANQANELLRCADIALYQAKDAGRGT 587

Query: 692 VESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             ++     +     ++ +  L  A+   +L + Y P  +     I+G EAL++WDHP+ 
Sbjct: 588 WRAYGREMDQRLHERLRREEELRVAITEQQLEVHYQPRYQSQGLYIIGAEALVRWDHPQR 647

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +F+ +AEE  +I  +  ++L +  +    W          + +N++   L D+ 
Sbjct: 648 GMLLPEQFIPLAEETGLIIPLGRWVLRQACQQAARWP-----GDTVVSVNLSPLQLHDDR 702

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +   ++    + +R++L  +ES ++   + +  LL R++ +G+ L +DDFGT  S 
Sbjct: 703 LLEEITQALADNGLAGNRLELEVTESALLRETQNTLELLKRIKALGVRLAVDDFGTGYSS 762

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L + PFD +K + S + G  +  +  +I+R++I + + +   + A+ +  E  ++ L
Sbjct: 763 LTTLRHYPFDVIKIDNSFVAGIGQSIEDHSIVRALIELGRGLRMRVTAEGVETEEQLRLL 822

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
           T  GC  +Q  H++ PL    +  +L
Sbjct: 823 TDDGCTEVQGFHMSHPLPAQDLWTML 848


>gi|312173911|emb|CBX82165.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 818

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/529 (25%), Positives = 241/529 (45%), Gaps = 14/529 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  + +        +LG +     G        +       F   L      + G  + E
Sbjct: 294 VSGEILLINNRAEQLLGGSQCEFIGKKAQ--ECMTPAMSAYFMQ-LSDAAQRKGGVQRNE 350

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            ++  +      +      +   +      + IA+D+T+Q+ +   I   A  DNLT +P
Sbjct: 351 RQLATSGGDRI-ISASASMVRGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 409

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F   LTT L     D      V+ +D+D +K +ND LG  VGD +L S+  R+  +
Sbjct: 410 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 468

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D LAR  G+ F I+L   ++  +    A  + ++I  P  +    +++  SIG   
Sbjct: 469 LRNRDTLARNGGDEFSIVLPGLSHPEEAEAMARRLIETIRPPFTVHGHNLSIGLSIGITL 528

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720
                 +   +L+ A++A+Y AK  G N  E F  +       R +I+ DL  A+   +L
Sbjct: 529 AQHGMTSPDYLLRCADMALYAAKRNGRNRFEHFTKAMGDTAQKRRIIENDLREAITYRQL 588

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI      EI+G EAL++W HP+ G I   EF+  AEE  +I ++  + L    R
Sbjct: 589 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPTAEETGLIHSLGTYALYEACR 648

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  SW  +       + +N++     ++ L   ++  + ++  +P R+++  +ESV++ N
Sbjct: 649 EAASWPGEQ-----TVAVNLSPLQFKNSALIAVVEGALKESGLAPHRLEVEITESVLLDN 703

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
              +  +L  L+ +G+ + LDDFGT  S LSYL   PFD +K + S +    + R   AI
Sbjct: 704 TLANIDILRELKALGVQIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMQDSREALAI 763

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +R+I  M+++++  I A+ +      + L   GC   Q  +   P    
Sbjct: 764 IRAITGMSRSLDIQITAEGVESNEQFQRLKAEGCTLFQGYYFGRPQPPE 812



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V G  D  ++  D+    +          G     + G   ++  +    DR +  
Sbjct: 135 FRLLVEGINDYAIYMLDLNGLVLNWNAGACRAKGFTCNEIIGK--HFSCFYSKQDRRHNL 192

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +  +    G  +        D    W  + I  + N  G+++ +  I  D TE ++ 
Sbjct: 193 PDKNLQLATATGHFEDNGWRYRKDGSAFWAHVVIDAIRNDGGELIGFAKITRDCTEMREY 252

Query: 526 LEG 528
              
Sbjct: 253 ERQ 255



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 2/119 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           SD   Q LA       ++  D      + +       G     + G  RN+  +    D+
Sbjct: 5   SDVVYQLLARSEGNCGIYMLDPEGIVASWSLGAQHAKGYLPAEIIG--RNFSCFYSQQDQ 62

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              +      V    GR   +      D    W    I  + + NG +L Y  I  + T
Sbjct: 63  MLGKPRHGLQVAREAGRFATKGWRYRKDGSAFWAHEVIDAVFDDNGKLLGYAKITRNCT 121


>gi|170723973|ref|YP_001751661.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida W619]
 gi|169761976|gb|ACA75292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudomonas putida W619]
          Length = 1247

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 150/580 (25%), Positives = 270/580 (46%), Gaps = 12/580 (2%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + G   +  +         +    +  +     + + V   DI +         + I G 
Sbjct: 658  IAGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717

Query: 441  ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                  G   R      H  D   +  +         G  Q E   +  + + +   + I
Sbjct: 718  NETEALGQTPRLLASGQH--DSAFYAAMWHQLTAE--GHWQGEIYNKRKNGELYPGWLTI 773

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + NS+ +I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL   L +  
Sbjct: 774  SAVRNSDREITHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLQAAL-ICP 832

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               N +  V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I
Sbjct: 833  QASNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +     +  A  +    + P    E E   +ASIG + +       + +++NA+ 
Sbjct: 893  LLPGLHKPSDASAIANKLLSCFSAPFQAGEHEFFTSASIGISLYPQDGTDVATLIRNADA 952

Query: 680  AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY +K +G N VE++     +  S+R+ ++ +L  A+E +E+ L Y P   L  + +VG
Sbjct: 953  AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAIERNEMSLCYQPKFSLKTQTLVG 1012

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP +G +    F+ +AEE   I  +  ++LE+  R +  W+         + 
Sbjct: 1013 AEALIRWSHPAFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMHHWKKHYQAFG-PLS 1071

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN+A   L  + L + ++ L+         ++L  +E+ +M   E +  +L +L+++G+ 
Sbjct: 1072 INLAGAQLRHHGLAKRIEQLLKTYQLKAGDLQLEITENFIMSQAEEALAVLHQLKQLGVQ 1131

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA
Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
            + +  +   + L   GC+ IQ   V+ PL  +      L+
Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPDDFAAAFLR 1231



 Score = 81.2 bits (199), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 10/170 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAVLGSGDIV 418
           +D++   L G L+LI IL     I   L           Q + S        +     I 
Sbjct: 265 HDMLMYGLPGVLLLIAILAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLIESLSAIA 324

Query: 419 WDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           W+ D         +P    +LG            W   +H  D   +             
Sbjct: 325 WEADANDFTYSYVSPHAEDLLGYPLHEWL-KPGFWRTILHPED-ALWAQAYCESETAAGR 382

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               ++RV  AD    W+   +  +   +G      G+  DI+E K++ +
Sbjct: 383 DHSLDYRVMRADGHSLWVRNIVSMI--EHGHRPVMRGLMIDISETKRTED 430



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 12/173 (6%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424
                      L   L     ++ +       Q + +  E+ + A   S D  +      
Sbjct: 522 FTGLTSAETFELDGTLAFVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              +        + G     ++     +   ++ +N+R      L       R     +F
Sbjct: 582 GLLIEVNEGFCRLTGYDLDPALDQTSFDLGIWVDLNERKRLIAQLA------RDGFVRDF 635

Query: 484 --RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              +R +D Q     +  RP+  +   +   + IA DITE+    E +   A 
Sbjct: 636 SCHIRRSDGQIRLCELSARPLPIAG--VDCMLTIARDITERHLMQEKLQLAAT 686


>gi|330823162|ref|YP_004386465.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329308534|gb|AEB82949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 698

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 124/574 (21%), Positives = 253/574 (44%), Gaps = 16/574 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++  V       Q +    ER       + + +  +      +     +  + G    
Sbjct: 129 LVLVNDVTERLEAEQAVRQSEERMRKFAEATEEGL-AFHRDGRILDANASLQRMTGYTLA 187

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G  R+   +I    R      L      R     YE  +R  D     +    + + 
Sbjct: 188 ELVG--RSIFDFIQPEYR-----ALAQEYTRRGREYPYELAMRHKDGHAIPIEAVGKTLP 240

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               +    + +  DIT +K++ E     A  D LT +PNR+  + +L   +  +     
Sbjct: 241 QQQDE--YRVVVVRDITARKQAQERARFLALHDPLTQLPNRRHLMLQLARTVATAQERRK 298

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  V+ +D+D +K +N+ LG   GD +L  + RR+ E +K  D +A + G++F ++L  
Sbjct: 299 -RSAVLFVDLDHFKTVNESLGHEAGDQLLCEVARRLQEGVKATDFVAHVGGDQFVVLLSG 357

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  A  A A+ + I     + E +++ + S+G + +        E+L+ A+ AM  
Sbjct: 358 LRGRAAAAAAADALIERIRAVYTIGETQLSPSPSVGISVFPDDGYGPDELLRRADAAMQQ 417

Query: 684 AKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      +           +  +  L  AV +  L L Y P +++    +VGLEAL
Sbjct: 418 AKESGRGTRLFYTPDMEGQPAEVLQQEHLLREAVFHDALELHYQPQVQVASGRLVGLEAL 477

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +   +F+ +AE   +I  I  ++L    R + +W ++     + + +N++
Sbjct: 478 VRWRHPQRGLVGPDDFIPLAESRGLITPIGRWVLREACRQLKAWHNEGLAL-VPVAVNLS 536

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    ++   +  ++ +T   P  +++  +E+ +M + E +R  L  L+ +G+++T+D
Sbjct: 537 AIEFRQRDVAGEIARVLQETGLEPQYLEVEITETTLMQHAEHTRATLQALQAMGVAVTVD 596

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D +K + S +  +      +AI+ +I+ +A++++   +A+ + 
Sbjct: 597 DFGTGYSSLTYLKRYPLDKLKVDRSFVADTPADGDDVAIVTAIVQLARSLQLQSVAEGVQ 656

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +  L  +GC+  Q   +A P+        L
Sbjct: 657 TTEQLTLLQSLGCELAQGFGIAPPMDVRRTRAWL 690


>gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 841

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 153/571 (26%), Positives = 277/571 (48%), Gaps = 13/571 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIR 450
           A     + +     R    V  + D +   +     V        +L       + G   
Sbjct: 140 ALKVAYRHLKDSELRYRKLVETTPDAILV-EGEEGIVFLNSAAVKMLKADNPDKLLG--G 196

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDI 509
             L ++  + ++     L       R     E  +          + +   P+ + +   
Sbjct: 197 ALLDFVLDDQKEYAAMQLKQACSVDRSAGPPEVMLLQQLTGGRVEVEVNCIPI-SYHRSP 255

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                +  DITE+++    I   A  D LTG+PNR  FLDR+T  ++ +  +++ R  ++
Sbjct: 256 CHMF-VLRDITERRRQEAAIEFQATHDALTGLPNRSLFLDRVTQSINHARRNES-RLALI 313

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+DK+K IND LG   GDD+L  +++R+ E  +  D LAR  G+ F +++ +  +   
Sbjct: 314 FIDLDKFKLINDTLGHNAGDDLLRIMSKRLQECTRNCDTLARFGGDEFVLLVDNLESEAD 373

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  S++ P+ LL +  ++T S+G +S+         ++++A++AMY AK  G 
Sbjct: 374 LTHLAARLISSVSAPVLLLGQSHSITCSLGISSFPEDGDNVEVLMRHADIAMYRAKESGR 433

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + F        ++R+ ++  L  A+EN E  L Y P + L   +I+GLEALI+W  P
Sbjct: 434 NSYQFFTHQMQDRLNERLKLESSLKQALENDEFVLHYQPQVDLSTGKIIGLEALIRWQSP 493

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +   +F+  AEE  +I AI  +++  + + + SWR Q     + + INI++   ++
Sbjct: 494 TLGLVPPGDFIPAAEEGRLISAIGEWVIFAVCKRLQSWRRQGLKI-VPVAINISALQFME 552

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E ++  +++ +  P  ++L  +ES+ M +P  S  L+ RL+ IG+SL++DDFGT  
Sbjct: 553 QKTEELVKQALNEYMVEPKYLELELTESLSMLDPVTSISLMQRLKDIGVSLSIDDFGTGY 612

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL   P + +K + S ++G        +I+++II M++++    IA+       I 
Sbjct: 613 SNLSYLKRFPVNKLKIDKSFVSGLTNNPDDYSIVKAIIRMSQSLGLKTIAEGAETAGQIA 672

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L    CD IQ  + + PL    I  +LKER
Sbjct: 673 LLAAENCDAIQGFYFSRPLPEAEICAMLKER 703


>gi|119775299|ref|YP_928039.1| sensory box protein [Shewanella amazonensis SB2B]
 gi|119767799|gb|ABM00370.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella amazonensis SB2B]
          Length = 1431

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/561 (24%), Positives = 260/561 (46%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I  +   S  G    +    + 
Sbjct: 870  QAEEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGTQLQF--SCYP 927

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +    +   +   +  + GR   E   R  DN    M + +  + +  G +  ++G+ +D
Sbjct: 928  D---AYSEQVRIILRQQ-GRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVGVFSD 983

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L  ++       +   T+MV+D+D +KK
Sbjct: 984  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKK-----DTHHTLMVLDLDNFKK 1038

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++L  ++RR+   L     L RL G+ F ++L  + +    A  A  + 
Sbjct: 1039 INDSLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLV 1098

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +   P  L   ++ V  SIG   +   +     +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1099 DAFVAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1158

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R+    ++ +  +   + +    + Y P + L +  + G+EAL++ +HP  G I  SE
Sbjct: 1159 LNRNALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSE 1218

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   ++ +       WR+Q       + +N++S+     +L + +++
Sbjct: 1219 FIPLAEETGLIVEIGDLVMRKACFAAQRWREQGLF-DGRVAVNLSSRQFALTDLQQRIES 1277

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1278 ILRLTKLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1337

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  T++ + +     +  L  + C+ 
Sbjct: 1338 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEE 1397

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            +Q    +  +       LLK+
Sbjct: 1398 VQGYIYSKAVPEAEFTTLLKQ 1418



 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 2/156 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            LI +LI   +I+  L      + I    ER  L++ GSGD +WDWDI   ++  +    
Sbjct: 722 ALIFLLITSGIIKAALRRREVQRQIAISEERLKLSLWGSGDEMWDWDIETGKIYRSNIWG 781

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           + L            +    IH  D++  R  L+          +  +RV+  D  + W+
Sbjct: 782 S-LEFPKDGHRSGKDDEESNIHPQDQERVREALNRHFYGETDHFEAAYRVKGKDGHWVWI 840

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           + R + +  + + + LR  G   +I   K++ E + 
Sbjct: 841 LDRAKIVERDDSENALRMTGTIKNINNFKQAEEQLR 876


>gi|189424637|ref|YP_001951814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420896|gb|ACD95294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 631

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 153/564 (27%), Positives = 284/564 (50%), Gaps = 16/564 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +  + +  +        +G  +   D   + V       +   L +G  +   +N    I
Sbjct: 66  NSELAATRDELQAIFDSAGGAIVVVDEKMEVVACNS--YSQWALFAGERNVMGKNLRSLI 123

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +D++    IL+  +  +R   Q +F     D       +   P+ N +G I R + + 
Sbjct: 124 CGHDQE--ECILEQILTTQRRVEQNDF---LHDG--RHYHLVGTPLKNHDGAISRVVLLY 176

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++ + E I   AF D+LTG+PNR    DRL  +L  +    N    ++ ID+D++
Sbjct: 177 TDITERRAAAEEIERLAFFDSLTGLPNRVLLKDRLAQLLTRAGRY-NEMVAILFIDLDRF 235

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND LG   GD +L  ++ R+   L+  D +ARL G+ F ++L        + D A  
Sbjct: 236 KEVNDTLGHGTGDQLLQVVSERLTACLRSCDTVARLGGDEFVVLLPGITERDCVGDIAAK 295

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + +S+  P+ L  RE+  + SIG + W     + S + KNA+ AMYHAK +G N    + 
Sbjct: 296 LLQSLCKPVQLDAREVFTSGSIGISLWPIDGDSVSTLFKNADTAMYHAKEQGRNTYRFYT 355

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +++ +  DL  A+E  EL+L Y P +      ++G+EAL++W HPK G I  
Sbjct: 356 PQMHATSMEQLTLSNDLRYALERGELHLCYQPQVSFETGGLIGVEALLRWIHPKLGMIPP 415

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I  I  ++L    R  + W  Q   P + + +NI++K   +++  + +
Sbjct: 416 DRFIPLAEDTGLIVPIGTWVLHEACRQAMMWVAQGL-PSLRVAVNISAKQFRESDFSDTV 474

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A++  T  +P+ ++L  +E +++ N  +++L L  L+ +G++L +DDFGT  S LSYL 
Sbjct: 475 KAVLQTTGLAPNLLELELTEGMLIENVTQTKLTLQSLKDMGVTLAIDDFGTGYSSLSYLK 534

Query: 875 YIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           + P D +K + S +    E      AI+ +++ +  +++ T+IA+ +  +  +  L    
Sbjct: 535 HFPLDRLKIDKSFVKEIAEKSGDAAAIVEAVVALGHSLKLTVIAEGVEQQDQVDFLHNRK 594

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           CD +Q    + PL   ++ +LL++
Sbjct: 595 CDELQGYFFSRPLTPQALEELLRK 618


>gi|95930928|ref|ZP_01313658.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133054|gb|EAT14723.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 745

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/607 (22%), Positives = 279/607 (45%), Gaps = 20/607 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           D ++   +   +L  +      +Q           +          V  S DI++  D  
Sbjct: 125 DFLRKPYLPTTLLESVSTEIAKVQTQHRYHQIQDELKGSEALHRFIVNNSPDIIYMLDQE 184

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                    +  +LG +  ++ G   ++   ++ +D +  + + +      R     E R
Sbjct: 185 GRFSFVNKRVQLLLGYSDKNLIGQ--HYSSIVYGDDIEKAQFVFNERRTGDRASHAVELR 242

Query: 485 VR-AADNQFHWMIIRIRPMS-----------NSNGDILRYIGIANDITEQKKSLEGILCN 532
           +    + +  ++  R   +              + + +   G+  DITE+K+S      +
Sbjct: 243 LLNRHNKEIRFVEARSLSVELTSMGVYRSGSGEHEEFIGTYGVIRDITERKRSEALQHYH 302

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            + D+LT +PNR  F DRL   L  +  + +    V+ +DID+++ IND LG   GD +L
Sbjct: 303 QYHDHLTDLPNRTLFHDRLHMALAQARRNSH-NLAVLFLDIDRFRMINDSLGHLAGDKIL 361

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +T+R+   L+  D LAR+  + F ++L +   S      A  + +S ++P++  E+++
Sbjct: 362 QRITQRLSTNLREEDTLARIGSDEFLLLLPNIKTSQDAITIAEKINQSCSVPMSYQEQDL 421

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710
            +T SIG A++     T  E+++ AELA    K  G +    ++          + ++  
Sbjct: 422 RLTFSIGIATFPEDGTTREELIRCAELAKCQVKQNGRHGCLLYQPQYQHQQVSALEMETA 481

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +   ++  +  L Y P +  + + +VGLEALI+W+HP+ G ++ S F+ +AE+  +I  +
Sbjct: 482 IRQGLQQDQFELYYQPQVDPVAQRVVGLEALIRWNHPQQGLLNPSLFIPVAEQSSLICEL 541

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             + ++R  RD     ++ ++  + I +N++ +        + +   +S      + +++
Sbjct: 542 GQWAVDRACRD-ARLLEERSLTGLKIAVNVSIQQFERPSFAKNVLESVSLHGLESNHLEI 600

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +M N +R   LL  L + GI + +DDFGT  S LSYL  +P   VK + S +  
Sbjct: 601 EITESNIMKNMDRGANLLTSLAEHGIGVAIDDFGTGYSSLSYLQTLPVSKVKIDRSFICN 660

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            + ++    I+ +++ +A  +    +A+ +  E   + L   GC  IQ  + +SPL F  
Sbjct: 661 LSGEKNGLPIVIAVLNLAAALNIHCVAEGVENEQQKQILQDAGCRLIQGFYYSSPLSFAQ 720

Query: 949 ILKLLKE 955
           ++  LK+
Sbjct: 721 LIPYLKQ 727


>gi|268680073|ref|YP_003304504.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618104|gb|ACZ12469.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 629

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 154/623 (24%), Positives = 278/623 (44%), Gaps = 16/623 (2%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
                WIL     +G ++     + +      L   L+  ++L  F +   +       +
Sbjct: 16  FFSILWILFSDSVVGFFIHDNSLISSLQTIKGLFFILITSLMLY-FLIKAKIDEIESIRK 74

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R    + G+    WDWD V  +          LGL  G +    ++W   IH 
Sbjct: 75  NLNEHRQRLEYVIEGANLGYWDWDYVNHQQWVNDRWLGFLGLMRGDIQDDFKDWAERIHP 134

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN--GDILRYIGIA 516
           +D+      ++S +   +     EFR++  D  + W+      +      G  LR  G  
Sbjct: 135 SDKIVADKAIESTIRNNK-PYVIEFRMQHKDGHWVWIEGSGAVVKRDEKTGAPLRLAGTH 193

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+++K++ E +L  A  D LT +PNR      L    +    DDN     + +D+D +
Sbjct: 194 RDISDRKRTQEDMLFLALNDPLTRLPNRAY----LRQEFEKRRLDDNSLMAFLFLDLDYF 249

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND+ G ++GD V+  + +R    L   D LAR+ G+ F I+         +      
Sbjct: 250 KNINDMYGHSIGDRVIQIVAKRFASCLCESDFLARVGGDEFVILTNGHL---HVGSLCED 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + +S+  PI L E    +  SIG A       +   + KNA+ AMY AK  G N    + 
Sbjct: 307 LVRSLVEPIVLEEDSFLLGVSIGVACSPQDGTSFEMLFKNADTAMYEAKSNGKNRYVFYT 366

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +      +  ++  A++N E  L Y P I L  ++++G+EALI+W+ P  G +  
Sbjct: 367 QDMTDTIVKSTKLDNEIKRALDNDEFVLYYQPQIDLKTKKVIGIEALIRWNEPSKGILGP 426

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+  AEE  +I  +   + ++  + +  W ++  +    + INI+   + +    + +
Sbjct: 427 NVFIPRAEENRLIIPMGEMVFKKALQQVKQWSEEKLLTG-RMAINISGIQIEEENFVDRL 485

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +     S I+L  +ES +M   E S L+L  L+ +G S+ +DDFGT  S LSYL 
Sbjct: 486 EAIRKEIGVDASLIELEVTESYIMTKAESSILMLQELQDLGFSIAVDDFGTGYSSLSYLK 545

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +       +  AILR+I+ +A+ +   ++A+ +  E   + L + GC
Sbjct: 546 QLPLQKLKIDRSFIKDLPYDYEDRAILRAIVSLAQGLRLEVLAEGVEEEEQEEFLLKNGC 605

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
              Q    A P+   +  + L++
Sbjct: 606 HLAQGFLFAKPMSAEACEEYLRQ 628


>gi|170745256|ref|YP_001766713.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658857|gb|ACB27911.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 776

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 168/763 (22%), Positives = 312/763 (40%), Gaps = 42/763 (5%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL----- 273
             + A+       ++    F S    +           +   +  + ++   +YL     
Sbjct: 33  FASLAVGAASGTIVATAAAFWSDDWAITLTA------FAVGLIGLTRVLLARVYLTKGPE 86

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
            ++R      Y +    A  A L  +SF     ++++A   +           I     G
Sbjct: 87  KYDRHEIWETYFSVGAFAYAASLGILSFLITTRSSNLALQVITPTFTIGYAAGISGRNAG 146

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITK---RLDNDIIQPALVGGLVLIVIL---IGFTVI 387
                LL  A +++    +   + ++    R    I+      G++ I +    I  + +
Sbjct: 147 RP---LLAIAQVVLSAMPLSAGLLVSGDGERASLGILSLLFAYGMIDITLSTREIIVSAL 203

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH- 446
                    +    +      +A+      +  +D             +I G+ S  +H 
Sbjct: 204 VTTREKEALAAKFQAQANLFDIALRNMSHGLCMFDARGRLQVWNDQFLSISGIPSSRIHT 263

Query: 447 ---GPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                    L    +++R   R + L +F             +   D++   ++ R    
Sbjct: 264 NSTARSLYKLSRAIVDERSAGRGSTLSTFAAASNALRSGNLVLILPDDRVVSLMQRRTAE 323

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                    Y+ I  DITE++++   I   A  D+LTG+ NR SF  +++  L  SA   
Sbjct: 324 K-------GYVIIFEDITERRRNEARIQQMASYDDLTGLLNRSSFKAKVSEALKASARSK 376

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V ++D+D +K IND LG   GD +L  +  R+  +      +ARL G+ F I+  
Sbjct: 377 G-DFAVHLLDLDHFKVINDTLGHPAGDRLLQMVADRLRGIGALSGSVARLGGDEFVIVQQ 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S  +     D A  + + +  P ++    +TV ASIG A           +LK A++A+Y
Sbjct: 436 SVTSPAVAEDLARRVLQELERPFDIDGTHVTVGASIGIAIAPFHANDEDRLLKCADIALY 495

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K  G +  + F+     + R    ++ DL  A+ N EL L Y PI+      IV  EA
Sbjct: 496 AIKGAGRSGFKIFQHEMEAATRARHALESDLRAALTNGELELHYQPIVDSSTGAIVSCEA 555

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G I  S+F+ +AE+  +I  +  ++L    R+   W        + + +N+
Sbjct: 556 LLRWHHPVSGYIPPSDFIPVAEDTGLIVQLGNWVLNEACREARKWPST-----VSVAVNM 610

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D +L   +   ++++     R++L  +ESV +G   +    + +LR++GI L++
Sbjct: 611 SPRQFGDPQLAFHVIGALNRSGLPAHRLELEITESVTLGATHKIVETINKLRQLGIRLSI 670

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LS L    FD +K + S ++      +  AI+R+I+ M ++I   I+ + +
Sbjct: 671 DDFGTGYSSLSSLRNFAFDKLKIDRSFVSDLDRKAESTAIIRAIVGMGRSIGMAIVVEGV 730

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             E  +  L   GCD IQ    + P+    I  +L    PL +
Sbjct: 731 ETETQLSILRTEGCDLIQGYVFSRPVAAPQIRTMLAAAGPLTR 773


>gi|148545672|ref|YP_001265774.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas putida F1]
 gi|148509730|gb|ABQ76590.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas putida F1]
          Length = 1247

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 272/580 (46%), Gaps = 12/580 (2%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + G   +  +         +    +  +     + + V   DI +         + I G 
Sbjct: 658  ITGVDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717

Query: 441  AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   ++    R      H  D   +  +         G  Q E   +  + + +   + I
Sbjct: 718  SEIEALGQTPRLLASGQH--DSAFYLAMWHQLTAE--GHWQGEIYNKRKNGELYPSWLTI 773

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + NS+ +I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL  +L  + 
Sbjct: 774  SAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTLFENRLQGVLTCAQ 833

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +  +  V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I
Sbjct: 834  VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +     +  A  +      P    E E   +ASIG + +       S +++NA+ 
Sbjct: 893  LLPGLHKPSDASTIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGTDVSTLIRNADA 952

Query: 680  AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY +K +G N VE++     +  S+R+ ++ +L  AVE +E+ L + P + L  + +VG
Sbjct: 953  AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP +G +    F+ +AEE   I  +  ++LE+  R + +W+     P   + 
Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMQAWKQHY-EPFGPLS 1071

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN+A   L    L   ++ L+         ++L  +E+ +M   E +  +L +L+K+G+ 
Sbjct: 1072 INLAGAQLRHPHLARRIEQLLKHYQLRAGDLQLEITENFIMSQAEEALAVLYQLKKLGVQ 1131

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA
Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
            + +  +   + L   GC+ IQ   V+ PL         L+
Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAAAFLR 1231



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +    L+  ++ +VI I   +   +       Q + S        V     I W+
Sbjct: 267 LLVYGLPTVLLLMAVLAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D         +P    +LG            W   +H  D    +   DS     R   
Sbjct: 327 ADANDFTYSYVSPHAEDLLGYPLSDWL-RPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD Q  W+   +  +   +G      G+  DI+E K++ +
Sbjct: 385 SLDYRVIRADGQPLWIRNIVSMI--EHGHQPVMRGLMIDISETKRTED 430



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424
                      L         ++ +       Q + +  E+ + A   S D  +      
Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              +        + G     ++     +   ++ +N+R      L+           +  
Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +R +D Q     +  RP+  +   +   + IA DITE+    E +   A 
Sbjct: 638 HIRRSDGQIRLCELSARPLPITG--VDCMLTIARDITERHLMQEKLQLAAT 686


>gi|270158864|ref|ZP_06187521.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968]
 gi|269990889|gb|EEZ97143.1| sensory box/GGDEF family protein [Legionella longbeachae D-4968]
          Length = 766

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 148/585 (25%), Positives = 285/585 (48%), Gaps = 16/585 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRD---RVTTTPDIAT 436
           IG  ++  V +    +Q +  + E +    A+  S   V   DI +     +        
Sbjct: 187 IGSEIVGRVYSFRDITQKLLEEDELRIRERAIEASTLGVAIIDISKSNMPIIYVNKAFER 246

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           I G +   + G     L ++H +  ++     L+  +   R     E      + +  W 
Sbjct: 247 ITGYSERQILGQN---LSFLHSSQVEHVSHKRLNFAIKELREE-TVEIECFKRNGEVFWA 302

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + + P+ +S  ++  YI I ND+T++++  + ++  A  D+LT +PNR   +DR+   +
Sbjct: 303 EVSVAPVRDSFDNVKHYICIINDVTQRREMEQQLIQQATHDSLTELPNRVLLIDRVDQAI 362

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +    ++    + +D+D +K  ND LG ++GD +L +++ R+       D + RL G+
Sbjct: 363 LQAKKKGSI-LAFLFLDLDHFKMTNDTLGHSLGDRLLQAVSNRLLIATNDFDTVCRLGGD 421

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L       +    A  + KSIA PI + +  + +T SIG + +         ++K
Sbjct: 422 EFVILLHDIATEQQAEQKAEEILKSIANPIRIDQHNLKITGSIGISYYPKDGDDYESLMK 481

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+L+MYHAK  G N   S+   ++    +R+ +   L  +++ +E +LVY P+I L   
Sbjct: 482 NADLSMYHAKDSGRNTYRSYDKEMNMRIINRMQLDNALRDSLKRNEFHLVYQPLINLATN 541

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +I+G EAL++W     G++S +EF+ +AEE  +I  I L+ L    + ++SW  Q     
Sbjct: 542 KIIGFEALLRWHSHILGDVSPTEFISMAEENGLILEIGLWALREACKQLVSWHQQ-GYSN 600

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +NI+ +    + L E ++  + +T  S   ++L  +ES+++ N + +   +  L+ 
Sbjct: 601 LTMAVNISGRQFRQSHLSEIIEKTLLETGLSAKYLELELTESLLVDNVKHAVETMYELKD 660

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G  L +DDFGT  S LSYL   P D +K + S +      E   AI R+II +  ++  
Sbjct: 661 MGTKLVIDDFGTGYSSLSYLKQFPVDRLKIDRSFINELVNRENDAAITRAIINLGHSLNL 720

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ +  E+ ++ +T  GCDY Q  +  +P     +   + + 
Sbjct: 721 EVLAEGVETELQLEFITNHGCDYAQGYYFTTPQKAEELKNFIIQH 765


>gi|127511912|ref|YP_001093109.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
 gi|126637207|gb|ABO22850.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 816

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/583 (23%), Positives = 269/583 (46%), Gaps = 12/583 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +  +L+  T I  +         + ++  R  + +   GD V   D         P    
Sbjct: 238 VAGMLLTLTDITSIKR---AKSQLDTENRRLKIMLNAIGDAVIATDSEAMITFMNPIAER 294

Query: 437 ILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHW 494
           + G     ++   I   +       +      +   +  +R   +    ++ + D     
Sbjct: 295 LTGWVCRDAIGLHIEQVMDLCDAKTKYRSPNPVTIAIKEKRNVAMALNCQLNSLDGTTFQ 354

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +     P+++S G +   I + +D +E       +   A  D LT +PNR    DR+   
Sbjct: 355 IEDSAAPITDSEGKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRILLHDRINHA 414

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
             ++ + D     +M+IDID +K +ND LG + GD V+  + +R+  L+     L R+ G
Sbjct: 415 CAVADSYDK-SVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPNATLGRIGG 473

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L S   + ++   A  + +S+  P  +  +E T++ S+G + + S  + + E++
Sbjct: 474 DEFVLLLPSLTATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSDALRAEELM 533

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            + + AMY AK  G N    F        + R  +   L  A++   + + Y P + L  
Sbjct: 534 THVDAAMYRAKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYYQPKVDLKT 593

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +EI+G EAL +   P    IS  +F+ +AEE  +I  +   +L++      +W+ +    
Sbjct: 594 KEIIGAEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAAKAWQKRGR-- 651

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P+ I +NIA+K   + E C+ +  ++  T    S ++L  +ES +M + + +  +L  L 
Sbjct: 652 PLQIAVNIAAKQFTNPEFCDSVAKVLELTGLDSSFLELEVTESSLMYDFDEALNVLNTLS 711

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            +G+S+ +DDFGT  S LSYL + P +T+K + S +      E+ + I++++I +AK+++
Sbjct: 712 SLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVIHLAKSLK 771

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +IA+ I     +++L  + C+  Q    + PL      +LL
Sbjct: 772 LKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPLKEFDQLL 814


>gi|268680858|ref|YP_003305289.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618889|gb|ACZ13254.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 961

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 153/613 (24%), Positives = 283/613 (46%), Gaps = 25/613 (4%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER------QSLAVLGSGDI 417
            +++  +LV   ++IV++   +V    L   Y +  + ++ +              S D 
Sbjct: 350 ANLVIISLVIMCLIIVMMFLISVKLRSLLARYENHLLLNNKQIKEQKMVFETLYQKSADG 409

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTI-LDSFVGY 474
           +W        +     I  +         ++  + +  P    + + ++      + +  
Sbjct: 410 IWLL-KEGLFIDCNEAIMKMFKTTDKQKLINVSLADLSPEFQPDGQSSYEKSRWMNSIAS 468

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI----- 529
           + G  ++E+  +A D    W+ + +  +  + G I        DIT +K   E       
Sbjct: 469 KEGVHKFEWYAKACDGTLIWISVVMTTVMMNKGKIQHC--SIRDITARKALEEENKKQKK 526

Query: 530 --LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +     D LTG+PNR    DRLT  +  ++ D  +   VM +D+DK+K IND LG   
Sbjct: 527 LLMHQVEHDILTGLPNRNLLQDRLTQAIKKASRDGKV-LGVMFVDVDKFKNINDSLGHDA 585

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L ++ +R+   ++  D +ARLSG+ F ++L    +   I      +  +   P   
Sbjct: 586 GDMLLKTIAKRMQHSIRETDTVARLSGDEFIVLLDGCKDVNDIFVAIKKLINAFQEPFIF 645

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
                 VT SIG + + +    +S++LKNA++AMY AK +G N    F     +     +
Sbjct: 646 GNESFKVTMSIGVSVYPNDGELASKLLKNADIAMYKAKSQGRNRYIFFDQEMNQETNEHL 705

Query: 708 KED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           + +  L  A+ N E  L Y P + L   +I+G EAL++W HPK G  +   F+ +AEE  
Sbjct: 706 EVEKSLHKALVNQEFVLHYQPQVNLKSGKIIGFEALLRWKHPKRGLTAPGYFIHVAEESE 765

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++++ + R +  W D+   P   + INIA K L  N L   +   + ++   P
Sbjct: 766 LIIEIGNWVIKEVMRQLKEWHDKGLRPG-KVAINIAGKQLESNHLIAFILQNLKESGCRP 824

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I+L   E  +M +  +S  LL R R++G+ +++DDFGT  S L+YL  +P   +K + 
Sbjct: 825 EWIELEIVERFIMKDATKSIALLKRFRELGLDISIDDFGTGHSSLAYLKELPITKLKIDQ 884

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     + +  AI R+II + + +   ++A+ +  +   + +   GCD IQ    + P
Sbjct: 885 SFVQNLENSSEDRAIARTIIELGRGLGLVVLAEGVETKAQKELIHSSGCDLIQGYVFSKP 944

Query: 944 LGFNSILKLLKER 956
           +   S+ ++LK +
Sbjct: 945 VDAKSVEEMLKNQ 957


>gi|182434502|ref|YP_001822221.1| hypothetical protein SGR_709 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326775027|ref|ZP_08234292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463018|dbj|BAG17538.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326655360|gb|EGE40206.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
          Length = 724

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/603 (23%), Positives = 260/603 (43%), Gaps = 16/603 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R+ + +            +          + A     Q + +   R       +   +  
Sbjct: 123 RIQHTLAAGFTGALRERTLAEQEAIARSALTARSDAEQALHATEARFRAVFKDAAIGIGI 182

Query: 421 WDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+  + +     +  + G L        +  W   +H  D        D  V   R   
Sbjct: 183 ADLDGNILEINDTLTKMFGGLEHHVRSHKVNEW---VHPEDSPQVWKYYDELVRGERDHY 239

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E      D    W  + +  + +S G     + +  D TE++     +   A  D LT
Sbjct: 240 RVEKAYYRNDGTVLWTNLTVSLLRDSEGRPEYQLALMEDTTERRLLNLRLRYEATHDALT 299

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR  F +RL   L      + +R  +  +D+D +K IND LG A GD +LV +  R+
Sbjct: 300 GLPNRTLFFERLEKALT---AQEGIRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRL 356

Query: 600 GELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
                   +++ARL G+ F  +    + + ++ + A  +  ++A PI L  RE+TV  SI
Sbjct: 357 QSCATAPGEMVARLGGDEFVALTTGPDTAEEVDELAGRILNALASPIRLDGRELTVRGSI 416

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G     S + +++E+L++A++ MY AK  GGN  +     +         +   L  A++
Sbjct: 417 GVVEGPSGERSAAEVLRSADITMYRAKAAGGNRYQLADAEADARAITRHGLTTALPAALD 476

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E ++ Y P++ L D  + G EAL++W HP+ G +    F+ +AE   +I  +  ++LE
Sbjct: 477 RGEFFIEYQPLVHLDDGTVHGAEALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLE 536

Query: 777 RIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
              R    W+++ +   P+ I +N++   L    L      ++ ++   P  + L  +ES
Sbjct: 537 ESVRQANFWQERHSDGGPLRINVNLSPTQLHHPRLVAETVDVLERSGLEPGALCLEVTES 596

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---- 891
            ++G  +     L +L ++G+ + LDDFGT  S L+ L  +P   +K + S   G     
Sbjct: 597 ALIGADDDLLKPLRQLAEMGVDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTRGMQQHP 656

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                + I+  I+ +A ++E  +  + +      ++L R+GCD  Q  + A P   + I 
Sbjct: 657 ADPVDLKIVEGIVSLAHSLELAVTVEGVETGAQAEQLRRIGCDTAQGWYYARPGAPDRIH 716

Query: 951 KLL 953
            LL
Sbjct: 717 SLL 719


>gi|282862781|ref|ZP_06271842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
 gi|282562467|gb|EFB68008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
          Length = 724

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/581 (23%), Positives = 252/581 (43%), Gaps = 16/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LA 441
                  + A     Q + +   R       +   +   D+  + +     +  + G L 
Sbjct: 145 EAIARSALAARSQAEQALHATEARFRAVFKDAAIGIGIADLEGNILEINDTLTRMFGGLE 204

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +      +  W   +H  D  +     D  V   R     E      D    W  + +  
Sbjct: 205 NHVRSHRVNEW---VHPEDSPHVWKYYDELVRGEREHYSVEKPYYRNDGTVLWTNLTVSL 261

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + ++ G     + +  D TE++     +   A  D LTG+PNR  F +RL   L      
Sbjct: 262 LRDAEGRPEYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALTH---R 318

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGII 620
           + +R  +  +D+D +K IND LG A GD +LV +  R+        +++ARL G+ F  +
Sbjct: 319 EGMRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVAL 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +    ++ + A  +  ++A PI L  RE+TV  SIG     S + T++E+L++A++ 
Sbjct: 379 TTGQRTQEEVHELAGRILSALATPIRLDGRELTVRGSIGVVEGPSGERTAAEVLRSADIT 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  GGN        +         +   L  A++  E ++ Y P++ L D  + G 
Sbjct: 439 MYRAKAAGGNRFALADAEADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVHGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797
           EAL++W HP+ G +    F+ +AE   +I  +  ++LE   R    W+    +  P+ I 
Sbjct: 499 EALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEESVRQANFWQERHTDGGPLRIN 558

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   L    L      ++ ++   P  + L  +ES ++G  +     L +L ++G+ 
Sbjct: 559 VNLSPTQLHHPRLVAETVDVLERSGLEPGALCLEVTESALIGADDDLLKPLRQLAEMGVD 618

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETT 912
           + LDDFGT  S L+ L  +P   +K + S   G          + I+  I+ +A +++  
Sbjct: 619 IALDDFGTGYSNLANLRRLPVSVLKLDRSFTQGMQQHPVDPVDLKIVEGIVSLAHSLDLA 678

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  + +      ++L ++GCD  Q  + A P   + I  LL
Sbjct: 679 VTVEGVETGAQAEQLRQIGCDTAQGWYYARPGAPDRIHSLL 719


>gi|254513944|ref|ZP_05126005.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
 gi|219676187|gb|EED32552.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
          Length = 643

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 152/585 (25%), Positives = 276/585 (47%), Gaps = 32/585 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLAS 442
           + Q +       +    D E  +  +  + D+++  D        +         LG AS
Sbjct: 64  LAQQISRRKELERRTQQDLELLNSVINATSDLIFYKDYAANDGRYLGCNESFINFLGRAS 123

Query: 443 GSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             +                IH  D           +  + G    E  +         + 
Sbjct: 124 KDIIRQTDRQFFSEKEVKLIHATD----------HIALKEGSHVVERWMEDPQGHRVLLS 173

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQDNLTGIPNRQSFLD 549
           I++   +++ G++   +GIA DIT+QKK+ E +          A  D LTG+PNR   +D
Sbjct: 174 IKLSSFNDTQGNVRGVVGIARDITDQKKTEETLRFQQRSLEHLAHHDALTGLPNRLYLID 233

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           +L   L LS   +     V+ +D+D +K IND LG ++GD+VL +++RR+   ++  D++
Sbjct: 234 KLNHAL-LSPDLNTASLAVLFLDLDHFKDINDSLGHSLGDEVLRAVSRRLSACVRKADVI 292

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F I+L    +S+   + A  + K    P+ L +R + V+ SIG +      +T
Sbjct: 293 ARLGGDEFTIVLQGIGSSIIAVEVAQKILKVFQEPLTLSDRTLNVSTSIGISVSPGDGVT 352

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPI 727
           + E+L+NA+ AMY AK  G N    +          R+ ++ D+  A+   E ++ Y P 
Sbjct: 353 TEELLRNADAAMYRAKRSGRNTFMHYSPDMTERALARLSMESDMHTALARGEFHVAYQPQ 412

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + +   E++G+EAL++W+H   GNI   EF+ IAEE  +I A+  ++LE +  +    ++
Sbjct: 413 VDMRSGELMGVEALMRWEHSTRGNIPPEEFIPIAEENGLILAMGSWVLEEVCAEQKRLKN 472

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 I   +N++ + LL+ E    ++ ++S    S S+++L  +ESV++  PE +   
Sbjct: 473 AGL-SDIRYAVNVSGRQLLNPEFLALVEHIVSTKDCSGSQLELEITESVLLHEPELAAKA 531

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           +   R++GI++ +DDFGT  S L+YL   P + +K + S +          AI ++II +
Sbjct: 532 MQSFREMGIAIAIDDFGTGYSSLAYLKQYPLNRLKIDASFVRDIVVDPDDRAIAQTIIAL 591

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              ++  +IA+ +  E     L   GC   Q    + P+    +L
Sbjct: 592 GNALDLEVIAEGVETEEQRAMLVSDGCSLGQGYLFSKPISPADLL 636


>gi|229101383|ref|ZP_04232127.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228682088|gb|EEL36221.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 569

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 261/566 (46%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E + +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQNLWKRILNGK--VWRGEIQNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----GKKEFGIIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L +E+   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNEHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCMTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YQEGLRLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGLLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565


>gi|17232389|ref|NP_488937.1| hypothetical protein all4897 [Nostoc sp. PCC 7120]
 gi|17134035|dbj|BAB76596.1| all4897 [Nostoc sp. PCC 7120]
          Length = 821

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/578 (26%), Positives = 278/578 (48%), Gaps = 8/578 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +   +       + +    ++    V  + DI+  ++     V   P I  + G+ +   
Sbjct: 243 LKSEIHEHKQTLETLAHSQKQFKAVVENTPDIIVRFNPQLCYVYVNPAIEKVTGILAQKF 302

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L      +           V     + ++E  +  +     +   R+ P    
Sbjct: 303 IGKTNVELNL--PQEICRIWDYKLQRVFKTGQQTEFESNLPTSWGT-KYYHTRLVPELAK 359

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  +   + IA DIT  K++   ++ +AF D+LTG+PNR  F++RL   L +     + R
Sbjct: 360 DSSVEFVLSIARDITALKQAEAKLIHDAFHDSLTGLPNRALFVERLERSLAVVKRHPDYR 419

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND LG  +GD +L +L RR+   L+  D +AR+ G+ F I+L    
Sbjct: 420 FAVLFLDVDRFKVVNDSLGHMIGDQLLNALARRLEMCLRAGDTVARIGGDEFTILLDDLK 479

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   + +    +  S+    NL   E+  T SIG    T++   + E++++A++AMY AK
Sbjct: 480 DLNDVTNVVNRINMSLTGAFNLSGHEVFSTISIGITLSTNTYNLAEELIRDADIAMYRAK 539

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G    E F  S     +  + ++ DL  AVE  E  + Y PI+ L   +I+G EAL++
Sbjct: 540 ALGKARHEIFDFSMYSQAAQLLQLEMDLRRAVERQEFQVHYQPIVSLETYKIIGFEALVR 599

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802
           W HP+ G +S   F+ +AEE  +I  I  ++L    R + +W+ +    PP+ I +NI+S
Sbjct: 600 WQHPQHGLVSPERFISLAEETGLIVPIGYWVLREACRQMRAWQLEFTTHPPLTISVNISS 659

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K      L E ++ ++  T    S +KL  +E+V+M N E +  +L +L+++ I L LDD
Sbjct: 660 KQFSQPNLIEEIRKILQDTGLEASSLKLEITETVLMENHESATAMLLQLQQMNIQLHLDD 719

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S LSYL   P   +K + S +      EK + I+++II +A ++   +IA+ +  
Sbjct: 720 FGIGYSSLSYLHRFPSSALKIDRSFVINLGADEKNLEIVQAIISLALSLNIDVIAEGVET 779

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
              +++L    C + Q    + PL   S+  L+    P
Sbjct: 780 MEQLRQLQIKKCKHAQGYIFSQPLDSQSVDTLIASSLP 817


>gi|83748362|ref|ZP_00945386.1| Hypothetical Protein RRSL_01709 [Ralstonia solanacearum UW551]
 gi|83724984|gb|EAP72138.1| Hypothetical Protein RRSL_01709 [Ralstonia solanacearum UW551]
          Length = 1234

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/584 (24%), Positives = 260/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D        V   P    +
Sbjct: 660  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 715

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  RT L          ++   R    D      
Sbjct: 716  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 770

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 771  NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 830

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 831  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 889

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 890  VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 944

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY+AK  G N +E F        S R+ ++  +  A+E+ +  L+Y P I     
Sbjct: 945  HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 1004

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 1005 RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1064

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1065 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1124

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1125 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1184

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL  +++  LL+ 
Sbjct: 1185 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1228



 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +  +A     + +    ER       + D ++DWDI        
Sbjct: 389 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 448

Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG  +               +  ++H  D + F   L + +   R    +  RV
Sbjct: 449 ASLHRLLGSDALLTSGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRNAWHHVCRV 508

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  +R +G   DI+++      + 
Sbjct: 509 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 553



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  +  +  G        
Sbjct: 544 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTCMPPG-PPPSFAQ 602

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 603 QAQFFTADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 661

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 662 LFGTMQDITERRESDEQLRLL 682


>gi|152992968|ref|YP_001358689.1| hypothetical protein SUN_1379 [Sulfurovum sp. NBC37-1]
 gi|151424829|dbj|BAF72332.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 703

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/567 (25%), Positives = 263/567 (46%), Gaps = 16/567 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +Q+  +    D V   D+     +       +    +  + G        +  ++  +  
Sbjct: 141 QQAQVLEQIHDAVILLDMDGFIRSWNKGSEILFEYRADEVIGKN---FSILFSDNITSAY 197

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               S +    G  + E  ++    +  + +     + N NG+    + + +DITEQKK+
Sbjct: 198 EKWISELKE-NGEYKGEMFLQKKSGEPLYAVFSFSLLKNQNGETTEVVSLIHDITEQKKA 256

Query: 526 LE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
                     +   A  D LT +PNR  F DRL   +  +A  +     +  ID+DK+K 
Sbjct: 257 EAVLQEQKNILRYQAHHDALTRLPNRVLFFDRLEQSIRKTARSEK-DFALFFIDLDKFKH 315

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG ++GD VL    +RI E ++  D LARLSG+ F +I+    +    +  A  + 
Sbjct: 316 INDSLGHSIGDRVLRVTAKRIKETIRQEDTLARLSGDEFTVIMEDLGHPEDASVLAEKIL 375

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P+ + E  + ++ SIG + +    + +  +LK A+ AMY AK  G N  E +   
Sbjct: 376 LVLQKPMYIDEYTLYISGSIGISLYPQDAMDTESLLKYADTAMYKAKENGRNTFEFYAPE 435

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ +K  L  A+E  EL + Y P I    E I+G+EAL++W HP  G +    
Sbjct: 436 MTEYALERIAMKTSLKEAIEKEELCVHYQPQIDARAECIIGVEALVRWQHPTRGLLHPEA 495

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  I+ +++    + + +W  +  +  + + +NI+ K L  +   E + A
Sbjct: 496 FISLAEDTGLIVDIDKWVMRTAMKQVSTWHQEGLVSDV-LALNISIKQLEGHNFMEEIAA 554

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +    + P  ++L   E  VM N   +   L  L  +GI +++DDFGT  S LS L  +
Sbjct: 555 CLDDFDFKPKWLELEIPEGQVMKNHTETIERLKELSVMGIGISIDDFGTGYSSLSLLKRL 614

Query: 877 PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P + +K + S +     E+ +AI+++II +A +++  +IA+ +  +     L   GC  I
Sbjct: 615 PINRLKIDKSFIEFIPNEEDVAIVKAIIALANSLKLDVIAEGVETDDQKDFLVENGCTKI 674

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKN 962
           Q  + + P+    +   L++R    + 
Sbjct: 675 QGYYYSRPIASEQMKHFLQKRQCASRT 701



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 25/173 (14%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER  LA+ GS   + DWD+V   +  +P    +LG     +      W    +  D  N
Sbjct: 14  KERFELALCGSKTSILDWDMVNHTLYISPSWKEMLGYREDELPNAESTWKKLAYPRDIVN 73

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L   +   R   +   R+R  D  + W++ R R + +  G+ +R +G   DITE+K
Sbjct: 74  VMRSLKKHIREHRKVFENNHRLRHKDGHWIWVLGRARIIYDEAGNPIRMVGTHTDITEEK 133

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +        A                 L  I             V+++D+D +
Sbjct: 134 ELQLKYSQQA---------------QVLEQI----------HDAVILLDMDGF 161


>gi|239927279|ref|ZP_04684232.1| hypothetical protein SghaA1_03553 [Streptomyces ghanaensis ATCC
           14672]
 gi|291435620|ref|ZP_06575010.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338515|gb|EFE65471.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 714

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 259/571 (45%), Gaps = 17/571 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
           G  +Q + +   R      G+   +   D+  + +     +  + GL+  ++ G  RN  
Sbjct: 142 GVVAQALHASEARFRAVFEGAAIGIGIADLEGNILQVNGALRRMFGLSEQALRG--RNVT 199

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            + H +D      + +  V   R     E      D    W  + +  + +++G     +
Sbjct: 200 EWTHTDDAPQTWRLYEELVRGEREHYHLEKAFNRPDGTVLWTNLTVSLLRDADGAPQYQL 259

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  D TE++     +   A  D LTG+PNR  F +RL   L+     +  R  +  +D+
Sbjct: 260 ALMEDTTERRLLNLRLRYEATHDALTGLPNRAFFFERLEKALN---AGEGQRFGLCYLDL 316

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIAD 632
           D +K +ND LG A GD +LV +  R+        +++ARL G+ F  +    +    + +
Sbjct: 317 DGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTRRTVDE 376

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++  PI++  RE+TV  SIG     + + +++E+L++A++ MY AK  GGN  
Sbjct: 377 LASRIMNALLAPISVDGRELTVRGSIGVVEGPAGERSAAEVLRSADITMYRAKSAGGNRF 436

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           E     +         +   L  A++  E ++ Y P++ L D  + G EAL++W HP+ G
Sbjct: 437 ELADPEADARAITRHGLTTSLPTALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHG 496

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLL 806
            +S   F+ +AE   +I  +  ++LE+  R    WR++        P+ I +N++   L 
Sbjct: 497 VLSPDRFIPLAEHTGLIVPLGRWVLEQSVRQAREWRERHGGEEAVGPLRINVNLSPCQLT 556

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              L +    ++ +T   P  + L  +ES ++G  +     L RL ++G+ + LDDFGT 
Sbjct: 557 HPGLVQDTVDILERTGVEPEALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTG 616

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            S L+ L  +P   +K + S              + I+  I+ +A +++  +  + +   
Sbjct: 617 YSNLANLRRLPVSVLKLDRSFTQSMQQFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETG 676

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              ++L  +GCD  Q  + A P     + +L
Sbjct: 677 AQAEQLRILGCDTAQGWYYARPGPPERLHEL 707


>gi|149185939|ref|ZP_01864254.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148830500|gb|EDL48936.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 768

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/708 (21%), Positives = 301/708 (42%), Gaps = 25/708 (3%)

Query: 266 IIFLFMY-LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
           + F+  Y L  +R    V     +        F       +    +  + +         
Sbjct: 64  LAFIAGYNLFLDRRMRDVDERGLTWEVMRRHAFASGAKGGVWGGGLCALAVTGAGGQLAE 123

Query: 325 FIIYHGMKGYERA--VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                       A      P     +I        +           A++    +   L 
Sbjct: 124 IWAALAFLMMVSAVSRYKAPLSTTAYIITATAGSMVAAMATFSFGLGAIMLATGVFACLG 183

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATIL 438
                +  ++       +    E  S+ +     G  D +W  D  R   + +P ++  +
Sbjct: 184 VIESARVAISVRAAEVEMQEKSETVSMLLREFEDGQADWLWQIDTKRRLRSVSPRLSFAM 243

Query: 439 GLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGY--RRGRLQYEFRVRAADNQFHW 494
           G     + G   ++L  I  +      F   L         R            + Q  W
Sbjct: 244 GREIADIEGK--SFLQLISGDGWKTGQFPPSLHDLADRLKSRESFSGLVVKALVNGQVRW 301

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +   PM + +G  L + G+ +D+T Q++S E I   A  D LT +PNR    + L   
Sbjct: 302 WEMSGTPMFDEDGKWLGFRGVGSDVTAQRESSEKIAYLARYDTLTQLPNRLQVNESLADA 361

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +      R  +++ID+D++K +ND LG  +GD +L  +  R+  L+   ++  RL G
Sbjct: 362 LAYA-EKWRTRCALLMIDLDRFKAVNDSLGHLIGDQMLAQVAGRLKPLMDEGELCGRLGG 420

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +I+    +  ++   A A+  +++ P ++  + + V AS+G A          E+L
Sbjct: 421 DEFAVIIRDAADRRRVDTLAKAIISALSAPYHVNNQVLYVGASVGSAIGPRDGRNVEELL 480

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +NA+LA+Y AK  GG     +     S   +R +++  L  A+E +E  L Y P++    
Sbjct: 481 RNADLALYRAKDEGGGVHCEYEPSLHSNAEERRVLEIALRSALEKNEFVLHYQPVVDANT 540

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS-WRDQANM 791
           EE+V  EAL +W+  + G IS ++F+ IAE+  +I  I  ++++   R+    W +    
Sbjct: 541 EELVSFEALARWNCEEHGFISPAKFIPIAEDTRLIVPIGTWVMQEACREAARNWPE---- 596

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + IN++ + L++ +    +   +S +   P R+++  +ES+ M +   +R  L + 
Sbjct: 597 -NVKVNINVSPEQLVEPDFAGTVVRALSHSGLDPKRLEIEVTESIFMRDANVARKALEQC 655

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMAKN 908
             +G S+ LDDFGT  S L YL  + F T+K + S + G   ++ + +AI+R+++ MA +
Sbjct: 656 MALGCSVALDDFGTGYSSLGYLRKLKFTTIKVDRSFVQGAAQNSPESLAIIRAVVAMADS 715

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  T  A+ +  + + + +  +GC+ IQ  H   P+      K+  ++
Sbjct: 716 LGMTTTAEGVENDDEAEMIRHLGCNKIQGYHFGRPMPSEDARKIFAQK 763


>gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens
           SK82]
 gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens
           SH164]
 gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens
           SK82]
 gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens
           SH164]
          Length = 855

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/560 (24%), Positives = 259/560 (46%), Gaps = 16/560 (2%)

Query: 401 FSDGERQSLA---VLGSGDIVWDWDI--VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + E   L    V  S + +   D    R  V   P    + G     + G   ++L  
Sbjct: 292 RKNQEHLRLLKRGVNASPNGIIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQG 351

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                      ++   +   +  +Q   +    D  + W  + + P+ +  G    ++GI
Sbjct: 352 --PETEAEKIALVQQALKEHKE-IQVTVKNYRKDGSWFWNRLMLGPVFDEAGRCTHFLGI 408

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT+Q+   + I      D+LTG+ NRQ+F   L    +           +  ID+D 
Sbjct: 409 QEDITQQRIHEDYITHQHSHDHLTGLANRQTFETNLQQAFETQHHSSKPLF-LCYIDLDD 467

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG  +GD ++ S++ R+  LL+  D L R +G+ F +++++ N   ++   A 
Sbjct: 468 FKPLNDSLGHLIGDQIIKSVSDRLQALLQTGDFLGRFAGDEFALLMVNRNKRSEVITTAE 527

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + K    P  + E +I ++ASIG  +   S   SSE+L +A LAM  AK +G N    +
Sbjct: 528 EILKLFTQPFQIDEHKIHLSASIGIVADDCSIQRSSELLYHAVLAMKEAKRQGRNTWHWY 587

Query: 696 RVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             ++ +         ++ +L  A+ +++  L Y P+I        G+EALI+W+HP+ G 
Sbjct: 588 EEANKKVMPEIDYAHLRLELMEALNDNQFNLFYQPLINPATGLAKGVEALIRWNHPQRGY 647

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +AE    I AI  ++L++   DI  W    +   + + +NI+          
Sbjct: 648 IFPDIFIPLAERTGQIVAIGQWVLKKACMDIAEWNK-THQSQLTVSVNISPLQFRRAGFL 706

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + ++  +  +  +P  +K+  +E +V+   +R+  +L  +R++G+ +++DDFGT  S LS
Sbjct: 707 QELEHALDISTLTPELLKIEVTEGMVIIGADRAIEILKSIRELGVQVSIDDFGTGYSSLS 766

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P + +K + S +   TE     AI++SII +A  +   ++A+ +        L +
Sbjct: 767 YLRRLPINQIKLDRSFIEHLTESDQDAAIVQSIIHLAHQLNLEVVAEGVETLKQAAFLYQ 826

Query: 930 MGCDYIQDSHVASPLGFNSI 949
            GCD +Q    A P     +
Sbjct: 827 QGCDLLQGYFYARPAPITEL 846



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%)

Query: 386 VIQHVLATGYFSQGI-FSDGERQSLAVLGSG------DIVWDWDIVRDRVTTTPDIATIL 438
           +++   A    +  +     +R +++   S       D +++ D     V+T      I+
Sbjct: 153 LLKQAAAMVALAIELDLERKQRIAISEKYSSFYTYHPDAIFEIDTQGIMVSTNIASRKII 212

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   + G   ++  ++    RD         +         E     A  +  W+ + 
Sbjct: 213 GFSDEQIRGK--HYSSFLPAEYRDIADKAFKEAMQGNAQYY--EIPAYHASGEMIWLDLT 268

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             P+   N  +    GIA DIT ++K+ E +   
Sbjct: 269 NLPIK-QNHQVTGVFGIARDITLRRKNQEHLRLL 301


>gi|228924095|ref|ZP_04087371.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228835585|gb|EEM80950.1| Sensory box protein [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 864

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 171/811 (21%), Positives = 342/811 (42%), Gaps = 36/811 (4%)

Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYI 232
           + + E   +      F + + +++ V   +       Y +   +          ++  Y 
Sbjct: 60  LSIHEQVIFSYKALPFFIIQYVLLFVGFAIKFIK--IYSIKGLAQFSFDSIFIVIMNIYF 117

Query: 233 SIDFGFLSKLV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI 290
           ++ F               +LI    ++  +  ++I       + +   A +   T   +
Sbjct: 118 TLTFILDLSSFRMLTKETWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILV 177

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-----------GYERAVL 339
                LF ++F           I  ASI+L     I+Y   K            ++    
Sbjct: 178 YGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDYIRF 237

Query: 340 LIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
           ++P + +I  +             L   +   +   + Q  +     +++        Q 
Sbjct: 238 ILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQILIHTYEQLTTQL 297

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  +  +    +R         D V+  ++      +     ++    +       
Sbjct: 298 EGEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVAS 355

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            + L +I   D +  +  L      R   L  E R +  +  ++++ I + P    N ++
Sbjct: 356 YSLLHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEV 412

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+
Sbjct: 413 VGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DAAVI 471

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +   
Sbjct: 472 FLDLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDIVARQGGDEFTILLPEMYSEKS 531

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +   +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G 
Sbjct: 532 AIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGK 591

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HP
Sbjct: 592 NRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHP 651

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++      
Sbjct: 652 KLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNH 710

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  
Sbjct: 711 ADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGY 770

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +    + +
Sbjct: 771 SSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGVETAEEWE 830

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 831 FLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 861


>gi|239904846|ref|YP_002951584.1| putative response regulator receiver protein [Desulfovibrio
           magneticus RS-1]
 gi|239794709|dbj|BAH73698.1| putative response regulator receiver protein [Desulfovibrio
           magneticus RS-1]
          Length = 801

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 145/552 (26%), Positives = 264/552 (47%), Gaps = 15/552 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTIL 468
           +  S +     D            A + GL      G   +        +      R   
Sbjct: 257 LGLSAEGFCVIDAEDRLRFLNASAARMFGLPGLPEPGTPLSDAL---PQELAASLVRDAS 313

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLE 527
                    + +  F +     Q   +++ + PM  + +  +    GI  DIT++K+   
Sbjct: 314 RVIAWNEPVKKETTFAI---GGQDKTLLVSLFPMGLDESRRLAG--GIVTDITDRKQLES 368

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   AF D LTG+PNR   LDR+   L+ S   DN +  V+ +D+D++K +ND LG  V
Sbjct: 369 QLAHMAFHDPLTGLPNRSLCLDRIRQALERSKRRDNYQYAVIFLDLDRFKIVNDSLGHHV 428

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L S+ RR+ + ++  D +ARL G+ F ++L    +  ++      +R +++    L
Sbjct: 429 GDRLLESVARRLRDCVRSLDTVARLGGDEFVVVLEETGSYREVVRIIKRIRDAMSEVFPL 488

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRV 705
              ++ V+AS+G     +      E+L+NA +A++ AK  G N  + F           +
Sbjct: 489 SGHDVHVSASMGIVVSPAIYEKPEELLRNANIALHRAKDEGRNRFKVFNTRMLEDAIRLM 548

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A++  E YL Y PI+ L D  + G EAL++W  P  G     EF+ + E+  
Sbjct: 549 DLESDLRAALKRGEFYLDYQPILALRDRRVTGFEALVRWRRPGKGIAPPGEFIPVCEDTG 608

Query: 766 MIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYS 824
           +I  + L++L    R + SW+ +      + + +N+++K L    L E ++ ++  T   
Sbjct: 609 LIVPLGLWVLTEACRTMASWQARFPETAGMSMSVNLSAKQLSQPSLVEDVERILRDTGMD 668

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +KL  +E+V+M NPE S L L RL+ +G+ L++DDFGT  S LSYL   P DT+K +
Sbjct: 669 PRALKLEITETVIMDNPEVSILRLKRLKALGVRLSVDDFGTGYSSLSYLQRFPIDTLKVD 728

Query: 885 GSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            + ++     +   I+ +++ +A ++   ++A+ +  E     LT   C+  Q    + P
Sbjct: 729 RAFVSDLDTSENRKIVGAVVALAHSLGLDVVAEGVELETQSDVLTGFACEAGQGFLFSRP 788

Query: 944 LGFNSILKLLKE 955
           +    + ++L+E
Sbjct: 789 VCKEDVERMLRE 800



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 4/130 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           I        I+  LA     + +     R       S   +   D         P    +
Sbjct: 107 IDSQALIVAIESSLARKRAEEALRQSEARSRAIFAASPTPLCLVDGHNAIADVNPAATRL 166

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G  + ++ G       +    D     +++D+      G ++        +       +
Sbjct: 167 FGHCADALRGQPAQ--DFFAARDAATLLSVIDAAANGEAGHVRLS--GLRPEGGVFPAAV 222

Query: 498 RIRPMSNSNG 507
              P+ ++ G
Sbjct: 223 AASPLPDAAG 232


>gi|114321079|ref|YP_742762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227473|gb|ABI57272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alkalilimnicola ehrlichii MLHE-1]
          Length = 735

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 145/579 (25%), Positives = 262/579 (45%), Gaps = 12/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   +      + +    +R         D V+  D+             ++GL   
Sbjct: 158 AGLVALAVERQLDRRALQEAEQRYRSLFTEHPDAVFQVDLEGRLRAANRSATRLIGLPES 217

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G  R++  ++   DR       ++    +      E + R A+     + I   P+ 
Sbjct: 218 ELLG--RHYHAFVFSEDRRRSDAAFEAVCRGKAQHY--EVQARTANGSKVELEITNLPII 273

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +  ++   GIA D+T +K+    +   A  D +TG+PNR+ F  RL     L    ++
Sbjct: 274 -VDDRVVGIYGIARDVTLRKQYEARLAYYASHDTITGLPNRREFESRLRHDFYLCRQHND 332

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   V+ ID+D +K +ND LG A GD +LV+  RR+  LL   D L+R  G+ F ++L  
Sbjct: 333 L-LAVLYIDLDDFKPVNDSLGHAFGDQLLVAAARRLERLLGPSDTLSRFGGDEFVMLLPG 391

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +   +    A  +        +L   E+ ++ASIG A       +  EM++ A  AM  
Sbjct: 392 LSGEAEALAVADRVLTLFKRSHSLGRHEVHISASIGIALNHRDVKSPEEMVQFANRAMQQ 451

Query: 684 AKHRGGNHVESFRVS---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           AK +G N    +        + + + ++ DL  A+   +L L Y P++      +  +EA
Sbjct: 452 AKQQGRNTWRRYAGELGTRAQGEDISLRRDLQEAIAGDQLMLHYQPVVDAATGYLHSVEA 511

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I    F+ +AE+   I  I  ++L R  RD+   + +     + + +NI
Sbjct: 512 LVRWQHPERGLIPPGVFIPLAEQTGQIIDIGHWILHRACRDMADLKARTGRT-LPVAVNI 570

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          + +  ++S++      ++L  +E V+M + E +   L  LR +G+   +
Sbjct: 571 SPLQFRRPGFLDNLAQVLSESGLPAETLELELTEGVLMADTEATIDTLAALRSLGVHAAI 630

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL Y+P D VK + S +    ++    AI++ +I MA ++E  ++A+ I
Sbjct: 631 DDFGTGFSSLSYLRYLPIDKVKLDRSFIQDVTNSRNTAAIVQGVITMAHHLELAVVAEGI 690

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             E   ++L   GCD +Q    A P+    + + L E F
Sbjct: 691 ETEAQRRDLQDRGCDLLQGFFFARPMPLTVLRRRLAEPF 729


>gi|228946170|ref|ZP_04108504.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228813516|gb|EEM59803.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 785

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 94  YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 152

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 153 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 212

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 213 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 272

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502
           ++ G            D+      L   +G R      + RV+  + +  +     I P+
Sbjct: 273 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNGKDIYFWYVTIVPI 328

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +    
Sbjct: 329 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 387

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ 
Sbjct: 388 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 446

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY
Sbjct: 447 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 505

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EA
Sbjct: 506 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 565

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + + IN+
Sbjct: 566 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINL 624

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++
Sbjct: 625 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 684

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ +
Sbjct: 685 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 744

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 745 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 779


>gi|289166350|ref|YP_003456488.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
 gi|288859523|emb|CBJ13484.1| putative regulatory protein (GGDEF and EAL domains) [Legionella
           longbeachae NSW150]
          Length = 766

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 148/585 (25%), Positives = 285/585 (48%), Gaps = 16/585 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRD---RVTTTPDIAT 436
           IG  ++  V +    +Q +  + E +    A+  S   V   DI +     +        
Sbjct: 187 IGSEIVGRVYSFRDITQKLLEEDELRIRERAIEASTLGVAIIDISKSNMPIIYVNKAFER 246

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           I G +   + G     L ++H +  ++     L+  +   R     E      + +  W 
Sbjct: 247 ITGYSERQILGQN---LSFLHSSQVEHVSHKRLNFAIKELREE-TVEIECFKRNGEVFWA 302

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + + P+ +S  ++  YI I ND+T++++  + ++  A  D+LT +PNR   +DR+   +
Sbjct: 303 EVSVAPVRDSFDNVKHYICILNDVTQRREMEQQLIQQATHDSLTELPNRVLLIDRVDQAI 362

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +    ++    + +D+D +K  ND LG ++GD +L +++ R+       D + RL G+
Sbjct: 363 LQAKKKGSI-LAFLFLDLDHFKMTNDTLGHSLGDRLLQAVSNRLLIATNDFDTVCRLGGD 421

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L       +    A  + KSIA PI + +  + +T SIG + +         ++K
Sbjct: 422 EFVILLHDIATEQQAEQKAEEILKSIANPIRIDQHNLKITGSIGISYYPKDGDDYESLMK 481

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+L+MYHAK  G N   S+   ++    +R+ +   L  +++ +E +LVY P+I L   
Sbjct: 482 NADLSMYHAKDSGRNTYRSYDKEMNMRIINRMQLDNALRDSLKRNEFHLVYQPLINLATN 541

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +I+G EAL++W     G++S +EF+ +AEE  +I  I L+ L    + ++SW  Q     
Sbjct: 542 KIIGFEALLRWHSHILGDVSPTEFISMAEENGLILEIGLWALREACKQLVSWHQQ-GYSN 600

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +NI+ +    + L E ++  + +T  S   ++L  +ES+++ N + +   +  L+ 
Sbjct: 601 LTMAVNISGRQFRQSHLSEIIEKTLLETGLSAKYLELELTESLLVDNVKHAVETMYELKD 660

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G  L +DDFGT  S LSYL   P D +K + S +      E   AI R+II +  ++  
Sbjct: 661 MGTKLVIDDFGTGYSSLSYLKQFPVDRLKIDRSFINELVNRENDAAITRAIINLGHSLNL 720

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ +  E+ ++ +T  GCDY Q  +  +P     +   + + 
Sbjct: 721 EVLAEGVETELQLEFITNHGCDYAQGYYFTTPQKAEELKNFIIQH 765


>gi|228994021|ref|ZP_04153922.1| Sensory box/GGDEF [Bacillus pseudomycoides DSM 12442]
 gi|228765669|gb|EEM14322.1| Sensory box/GGDEF [Bacillus pseudomycoides DSM 12442]
          Length = 840

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 152/805 (18%), Positives = 333/805 (41%), Gaps = 48/805 (5%)

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
             ++  ++ ++A F T+ Y       L     +  +V    +I +      V   +    
Sbjct: 37  FYLLFLISYIVAFFYTLMYESTTWKKLFTLCNVCIIVTALFTICYYLFISNVIHTNIMSP 96

Query: 252 IWRACSEI--------ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
           I      +         L    ++F  + L   +  A +           ++   + +  
Sbjct: 97  IAPFVLLMYPMADLVFLLIGISLLFRPLSLMSKQVAALLSSALIFYAILDSVYAYIKYIK 156

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP-----AWILIFIWFIGLWMAI 358
           P  +  I      ++ +  T+  +       + + +L+         L   +   + +  
Sbjct: 157 PGYSMFIIAPFYQALFMMVTFACLIRTNAKQKPSQVLLTPKSGETIRLSLPYISVITLIT 216

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-------------------- 398
              +++      +VG ++    ++   ++          Q                    
Sbjct: 217 FILVEHTFSPVLVVGFIITFFFVLLRHLLIRRQNKRLLLQQLHFSQELEKQIELRTEDLV 276

Query: 399 ----GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +F   +          D ++  D+  D +       T+LG  +  +     +   
Sbjct: 277 DQKNELFQSKQMFKSLYEHHPDPIFTLDLYGDFLNVNNAGTTLLGYQTNELLQKPCH--S 334

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            ++  D              R   +  + R    +   +++ +   P+      I     
Sbjct: 335 LVYEKDSQKVIDAFRHVKQGR--SISLDIRAYHKNRDIYYLHVTAVPIILKE-HITGIYL 391

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DITE ++    I   A+ D LT + NR++F +   + +  +   +     V+ +D+D
Sbjct: 392 MIKDITESEQQQRQINFLAYHDTLTELANRRAFQEYRESAIIKAKK-EQESFAVIFLDLD 450

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  +GD +L+++ +R+ ++ K    + RL+G+ F +++     + ++   A
Sbjct: 451 RFKIINDTLGHRIGDLLLIAVAKRLKQISKQNVKIVRLAGDEFTLLIEDYEENSEVQRVA 510

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  S+  P  +    + ++ SIG A +         +L++A++AMY  KH+G N    
Sbjct: 511 DNILSSMNKPFEIENHLLQISPSIGIAIYPEDGEDVMSILQHADMAMYETKHKGKNGSSF 570

Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +    +        I++DL LA+ N E  +VY P I ++ ++++G EALI+W H   G I
Sbjct: 571 YTKELYEKIERKARIEKDLPLALANHEFSIVYQPQIDVVTKKVIGAEALIRWQHLDLGVI 630

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ IAEE   I  +  +ML++  + + +W  Q     + + +N+++K+   + L +
Sbjct: 631 SPCEFIPIAEETIQIIPLGHWMLKQTCQQLQAWH-QFGYTDLNMSVNLSAKEFQQDNLID 689

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T   P  + L  +E + M + E + L L +L++ G+  ++DDFGT  S L+Y
Sbjct: 690 VILNILQETNLEPKFLTLELTERIAMIDEEETLLKLRQLKEYGVQTSIDDFGTGYSSLAY 749

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K            E+  AI+ +I+ +A  ++ +++A+ I  +  ++ L   
Sbjct: 750 LSLYPINTLKVPREFTQMAEHREEEKAIVSTILSLANTLQLSVVAEGIETKEQLQFLQNN 809

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC Y+Q  + + PL     +K L++
Sbjct: 810 GCKYMQGYYSSKPLSGKEFMKFLQK 834


>gi|229171410|ref|ZP_04298995.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228612114|gb|EEK69351.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 569

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 257/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRNGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQILWKRILNGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNEMIA-----GKKEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  ++         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCAYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL +    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALARCSTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPPNRLILEVTESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565


>gi|239945878|ref|ZP_04697815.1| hypothetical protein SrosN15_33126 [Streptomyces roseosporus NRRL
           15998]
 gi|239992347|ref|ZP_04713011.1| hypothetical protein SrosN1_33933 [Streptomyces roseosporus NRRL
           11379]
 gi|291449335|ref|ZP_06588725.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291352282|gb|EFE79186.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 724

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/603 (22%), Positives = 260/603 (43%), Gaps = 16/603 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R+ + +            +          + A  +  + + +   R       +   +  
Sbjct: 123 RIQHTLAAGFTGALRERTLAEQEAIARSALTARSHAEEALHATEARFRAVFKDAAIGIGI 182

Query: 421 WDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+  + +     +  + G L        +  W   +H  D        D  V   R   
Sbjct: 183 ADLDGNILEINDTLTRMFGGLEHHVRSHKVNEW---VHPEDSPQVWKYYDELVRGEREHY 239

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E      D    W  + +  + +S G     + +  D TE++     +   A  D LT
Sbjct: 240 RVEKAYYRNDGTVLWTNLTVSLLRDSEGRPEYQLALMEDTTERRLLNLRLRYEATHDALT 299

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR  F +RL   L      +  R  +  +D+D +K IND LG A GD +LV +  R+
Sbjct: 300 GLPNRTLFFERLEKALT---AQEGGRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRL 356

Query: 600 GELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
                   +++ARL G+ F  +    + + ++ + A  +  ++A PI L  RE++V  SI
Sbjct: 357 QSCATAPGEMVARLGGDEFVALTTGPDTAEEVHELAGRILNALATPIRLDGRELSVRGSI 416

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFRVSSFRSDRVMIKEDLCLAVE 716
           G     + + +++E+L++A++ MY AK  GGN  +            R  +   L  A++
Sbjct: 417 GIVEGPAGERSAAEVLRSADITMYRAKAAGGNRFQLADAEADERAITRHGLTTALPAALD 476

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E ++ Y P++ L D  + G EAL++W HP+ G +    F+ +AE   +I  +  ++LE
Sbjct: 477 RGEFFIEYQPLVHLGDGTVHGAEALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLE 536

Query: 777 RIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
              R    W+++ +   P+ I +N++   L    L      ++ ++   P  + L  +ES
Sbjct: 537 ESVRQANFWQERHSDGGPLRINVNLSPTQLHHPRLVAETVDVLERSGLEPGALCLEVTES 596

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---- 891
            ++G  +     L +L ++G+ + LDDFGT  S L+ L  +P   +K + S   G     
Sbjct: 597 ALIGADDDLLKPLRQLAEMGVDIALDDFGTGYSNLANLRRLPVSVLKLDRSFTRGMQQHP 656

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                + I+  I+ +A ++E  +  + +      ++L R+GCD  Q  + A P   + I 
Sbjct: 657 ADPVDLKIVEGIVSLAHSLELAVTVEGVETGAQAEQLRRIGCDTAQGWYYARPGAPDRIQ 716

Query: 951 KLL 953
            LL
Sbjct: 717 SLL 719


>gi|289678106|ref|ZP_06498996.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 748

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/703 (22%), Positives = 298/703 (42%), Gaps = 62/703 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V                   +IY  ++G+              +  + 
Sbjct: 61  AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL                         +  + +  ER  L    
Sbjct: 111 LRNSDQAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L           
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523
             ++   + + R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K 
Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281

Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD- 556
                                     +  E +   AF D LT + NR   ++ LTT  + 
Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +   +  R TV+ +D+D +K +ND +G   GD +L ++  R+   ++  D+LAR+ G+ 
Sbjct: 342 RAPRYE--RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDE 399

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   S     E+L++
Sbjct: 400 FAILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRD 459

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK +G      F  S      D ++I+  L  A+E+ +  + Y PI     E 
Sbjct: 460 ADVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGNCEH 519

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR + +   +
Sbjct: 520 LVGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDL 579

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ K+L      + +  +I+ T     ++++  +ESV +  P+    +L ++R++
Sbjct: 580 RLNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQL 639

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G+ + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + +   
Sbjct: 640 GVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLD 699

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 700 ITAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|290955706|ref|YP_003486888.1| hypothetical protein SCAB_11501 [Streptomyces scabiei 87.22]
 gi|260645232|emb|CBG68318.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 714

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/626 (22%), Positives = 265/626 (42%), Gaps = 24/626 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-----G 399
             + ++  G       R     +Q A+  G    +        + +      +Q      
Sbjct: 88  AYLVLYCGGDGPQEDLRARAGRLQSAMAAGFAEALRQRTLAEQEAIARAALEAQGAVALA 147

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHI 458
           + +   R      G+   +   D+  + +     +  + GL   +M G  +  W    H 
Sbjct: 148 LHATEARFRAVFEGAAIGIGIADLDGNILQVNGALLRMFGLTEQAMRGRRVPEWK---HA 204

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D      + D  VG  R     E      D    W  + +  + +++G     + +  D
Sbjct: 205 EDAPQVWRLYDELVGGEREHYHTEKAFHRPDGTVLWTNLTVSLLRDADGRPQYQLALMED 264

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            TE++     +   A  D LTG+PNR  F +RL   L      D  R  +  +D+D +K 
Sbjct: 265 TTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALA---AGDGQRFGLCYLDLDGFKT 321

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           IND LG A GD +LV +  R+        +++ARL G+ F  +    +   ++ D A  +
Sbjct: 322 INDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGTDTEREVDDLADRI 381

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++  P+ +  RE+ V  SIG     + +   +E+L++A++ MY AK  GGN  E    
Sbjct: 382 MNALVTPVRIEGRELLVRGSIGIVEGPAGERGPAEVLRSADITMYRAKSAGGNRYEVADA 441

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +         +   L  A++  E ++ Y P++ L D  + G EAL++W HP+ G +   
Sbjct: 442 EADARAITRHGLTTALPAALDRGEFFIEYQPLVHLGDGTVRGAEALVRWLHPQHGVLGPD 501

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP----PIFILINIASKDLLDNELC 811
            F+ +AE   +I  +  ++LE+  R   +W+++        P+ + +N++   L    L 
Sbjct: 502 RFIPLAERTGLIVPLGRWVLEQSVRQARAWQERGGGTRAAGPLRVNVNLSPCQLTHPGLV 561

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           +    ++ +    P  + L  +ES ++G  +     L RL ++G+ + LDDFGT  S L+
Sbjct: 562 QDTVDILERAGLPPDALCLEVTESALIGADDDLLKPLRRLSEMGVDIALDDFGTGYSNLA 621

Query: 872 YLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  +P   +K + S              + I+  I+ +A +++  +  + +      ++
Sbjct: 622 NLRRLPVRVLKLDRSFTQSMQRFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETGAQAEQ 681

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           L  +GCD  Q  + A P   + + +L
Sbjct: 682 LRILGCDTAQGWYYARPGPPDRLHEL 707


>gi|83647197|ref|YP_435632.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83635240|gb|ABC31207.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 636

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/584 (24%), Positives = 266/584 (45%), Gaps = 24/584 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q +       Q + +     +  +  + D +  +D     +        +  +     
Sbjct: 61  LKQQLQEISTTKQELENSVSLLNATLNSTCDGIIVFDQDNRVIACNNVFLKMFDMRQEVA 120

Query: 446 HGPIRNWLPYIHINDRDNFRTI--------LDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
               ++   +I    R+  + +         +     R      E      D +F     
Sbjct: 121 ENINKH---HIRPYLREKVKNLDELTRLWEFNKRFNQRSSYCLLEM----KDGRFIDCYT 173

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             R      G +L  +   +DITE K S +  L +++ DNLTG+PNR  F +RLT  ++ 
Sbjct: 174 NPRIH---EGKVLGRVWSLSDITELKLSEQQALFHSYHDNLTGLPNRTLFHERLTHAIER 230

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                     VM +D+D +K IND  G+  GD +L    +RI E L     +AR  G+ F
Sbjct: 231 RGVQQR-DLAVMFLDLDGFKDINDSTGLETGDQLLQMAAQRIKETLPPETTVARYGGDEF 289

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L +   S +    +  +R +I  P  + ++   +T SIG A + +    +  +++ A
Sbjct: 290 IVLLENIKTSFEATLVSERLRSAIDRPFTVDDQTFHLTCSIGIALYPTDSRDADALIRKA 349

Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AM HAK RG N+ + F        S R+ I+ +L  A+E +E  L+Y P I L    I
Sbjct: 350 DMAMNHAKSRGRNNCQFFADEFEILTSHRLRIRNNLKSALEKNEFNLLYQPKIALHSNMI 409

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G+EALI+W  P    +S +EF+  AEE  +I  I  ++ E   + +  W  + +     
Sbjct: 410 IGVEALIRWRRPSGEVVSPAEFIPAAEENGLIIDIGNWVTEEACKQLQRWGRENHH-NFS 468

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+       ++   +   + +    P  +++  +ES +M + E +  +L  LRK+G
Sbjct: 469 VAINISPFHFQHADILSTITQALRRYSVRPELLEIELTESALMEDIEHTIEILAELRKLG 528

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           IS ++DDFG   S L+YL  +P DT+K +   +     +++ +A++ ++I +A +++  +
Sbjct: 529 ISCSVDDFGAGYSSLNYLKRLPVDTLKIDKMFIDDITKSQRDLALVDTMINLAHHLDMLV 588

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +A+ +  E  +  L    CD  Q  + + P+    I ++L  R 
Sbjct: 589 VAEGVETEETVHLLKEKRCDLAQGYYFSRPVSGKVISEMLTTRL 632


>gi|229018938|ref|ZP_04175781.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229025182|ref|ZP_04181606.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228736115|gb|EEL86686.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228742381|gb|EEL92538.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 883

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 157/736 (21%), Positives = 316/736 (42%), Gaps = 50/736 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +  H  V  +       +  L  ++   
Sbjct: 168 PTVFKSKWKIYIFVFVLISSAAFNYIYFYLNTHLSHDTVALLRLLYRIPLL-LVAIAASI 226

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P    +    ++ + VL     + +                    +    +   + ++  
Sbjct: 227 PSGLTNNTSYSIVNPVLGKKVLVTF-----------------PYLVVAFLIGFTLKEQTA 269

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS---------------------QGIFS 402
           + I+        V ++I      +Q+   T                         + +  
Sbjct: 270 SSILITGNCITFVFVLIRHSIGRMQNKSLTERLQFFNAQLEEKVAVRTSDLVQKSEALSQ 329

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ++         D ++  D+    +        +LG+A+  + G     L  I   D+ 
Sbjct: 330 KQQKFESLYEYHPDPIFTIDLNGIFLNVNKAGGMLLGVATSELFGKTC--LSIILDEDKH 387

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              + L+         LQ   R +  +   +++ + I P+   +G I     +  DIT  
Sbjct: 388 KLASALEKIKKQEPTSLQL--RSQYNNGFTYFLYVTIVPIM-IDGQISGSYIMVKDITAL 444

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK  E I   AF D +T I NR  F  +L  ++  +   D+    ++ +D+D++K IND 
Sbjct: 445 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKKVIKNAKITDS-EFALLYLDLDRFKAINDT 503

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG + GD +L  ++ R    L     L+R+ G+ F I++    +   +      + + + 
Sbjct: 504 LGHSSGDYILEEVSNRFQSCLPSHTHLSRIGGDEFTILIEDYTDEDSLFQLCNQLFECMK 563

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700
            P  + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK      +    ++  
Sbjct: 564 KPFVIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIARK 623

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ I
Sbjct: 624 IERRLRLEKDLPNAIQNEELFLLYQPQVDSGSNKIIGAEALIRWNHPELGVISPYEFIPI 683

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  I  + L++    +  W        + I +N+++K+    +  + + + ++ 
Sbjct: 684 AEETLQIIPIGKWTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLAT 742

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT
Sbjct: 743 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 802

Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K     +  + + E  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  
Sbjct: 803 LKIPREFITMSETCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCHFIQGY 862

Query: 939 HVASPLGFNSILKLLK 954
           + + P+  N+  +LL+
Sbjct: 863 YYSKPIHTNAFTELLE 878


>gi|197118504|ref|YP_002138931.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087864|gb|ACH39135.1| response receiver sensor diguanylate cyclase/phosphodiesterase,
           PAS, PAS and PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 953

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/568 (23%), Positives = 262/568 (46%), Gaps = 10/568 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +       + +  D  R +  V  S D +   D      +       + G  +  M G  
Sbjct: 383 LFKDISERKRLEEDRARLAAIVESSDDAIMAVDREGAITSWNAGAEKMFGYPAQDMKGVH 442

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            ++L  +    ++     L+  +         E        +  ++ + + P+ +++G +
Sbjct: 443 LSFL--VSPEKKEQVT-CLNDGIRSDGAVTHCEVVHVTRGGRQIYVSLTMSPIKSADGGV 499

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +    IA D+TE+ +  E I   A  D LT +PNR+ F D L   L  +  +      V+
Sbjct: 500 VGTSCIARDVTERTRMEEIIKHQAQHDTLTDLPNRKLFGDFLNLELAQARRNRK-SLAVL 558

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K++ND LG A GD +L ++ +R+   ++  D +AR+SG+ F +++     +  
Sbjct: 559 FMDLDRFKQVNDTLGHAAGDRLLQAVAQRLKRCVRESDTVARISGDEFNVLMPDLAQTDD 618

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +      P  L   E+ VT S+G + +     ++ E+L+ A+ AMY AK   G
Sbjct: 619 VGIVVGKIMGVFRTPFVLEGAELKVTTSVGVSMFPDDGDSAQELLQKADGAMYVAKQTPG 678

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + +             ++  L  AV  +EL LVY P++ L   EIVG EAL++W HP
Sbjct: 679 NSYQFYNGEINARTVARQNMERRLREAVSKNELDLVYQPLLSLKSGEIVGAEALLRWHHP 738

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  S+F+ +AEE   I  I  ++L    R +  W+ Q     + + +N+++++   
Sbjct: 739 EHGQLLPSQFLPVAEETGAIVPIGEWVLFNACRQMRLWQSQGFD--LSVAVNLSNREFHQ 796

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               +     +S++   P+ ++L  +E  +M NP  S   + RL  IG++ ++DDFG   
Sbjct: 797 PNFIDLAMRALSQSGLDPASLELDVTEKAIMDNPAFSLRNMRRLTDIGVAFSVDDFGVGA 856

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS +  +P   VK + S +         + ++ ++I M+ +++  + A  +     + 
Sbjct: 857 SSLSRIKELPIAKVKIDRSFIRDILTEPNDLDVVSAVICMSHSLKMRVNAVGVESAEQLA 916

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +   GCD +Q   ++ PL  +   +LL
Sbjct: 917 LVGSFGCDEVQGDLISRPLPPHEFERLL 944



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I    ++ S A   +    W+W++   +   + ++  ILGL   S        L  +H
Sbjct: 142 ERIRRREQQLSQAERITHLGSWEWNLETGQAVWSDELYRILGLVPESAPATFEALLQMVH 201

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR+     +            + +R+  AD +   +  ++  + + +G     IG  +
Sbjct: 202 PADREALEKAVQQLRETGSAMGIHYYRLLRADGETRIVRGQLESVRDGSGRQT-VIGACH 260

Query: 518 DITEQKKSLE 527
           D+TE K +  
Sbjct: 261 DVTELKWAEA 270



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 6/146 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHG 447
            V    +    + +   R S     + D++    +     +         LG     + G
Sbjct: 261 DVTELKWAEAALRASERRFSKIFQATPDLLSITSLTDGTILEVNEAFLRALGYQRQEVIG 320

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                L     +D+      L   +  R      E R++  + +    ++    +   NG
Sbjct: 321 TYAGELGLWADSDQP---AALLQQLEVRGEVRDIEVRLKGRNGRELEGLVSAELI-EING 376

Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533
           +    + +  DI+E+K+  E     A
Sbjct: 377 NP-YLLTLFKDISERKRLEEDRARLA 401


>gi|302562228|ref|ZP_07314570.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
 gi|302479846|gb|EFL42939.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
          Length = 714

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 147/625 (23%), Positives = 271/625 (43%), Gaps = 22/625 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-----VLATGYFSQG 399
             + ++  G       R  +  +Q A+  G    +        +      + A G  +Q 
Sbjct: 88  AYLVLYCGGDGDREDLRARSARLQHAMAAGFAQALRARTLAEQEAIAQAALEAQGVVAQA 147

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   R      G+   +   D+  + +     +  + GL   SM G  RN   + H +
Sbjct: 148 LHATEARFRAVFEGAAIGIGIADLQGNVLQVNGALRRMFGLTEQSMRG--RNVKEWTHPD 205

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D      + D  V   R     E      D    W  + +  + + +GD    + +  D 
Sbjct: 206 DAPQTWRLYDELVHGDREHYHLEKAFYRPDGTVLWTNLTVSLLRDPDGDPQYQLALMEDT 265

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE++     +   A  D LTG+PNR  F +RL   L         R  +  +D+D +K +
Sbjct: 266 TERRLLNLRLRYEATHDALTGLPNRTFFFERLEKAL---GAGAGQRFGLCYLDLDGFKTV 322

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND LG A GD +LV +  R+        +++ARL G+ F  +    +    + + A  + 
Sbjct: 323 NDSLGHAAGDRMLVEVADRLQACATAPGELVARLGGDEFVALTTGPDTERTVDELAGRIM 382

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  PI++  RE+TV  SIG     + + +++E+L++A++ MY AK  GGN  E     
Sbjct: 383 NALLAPISVDGRELTVRGSIGIVEGPAGERSAAEVLRSADITMYRAKSAGGNRFELADPE 442

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +         +   L  A++  E ++ Y P++ L D  + G EAL++W HP+ G +S   
Sbjct: 443 ADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLSPDR 502

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANM----PPIFILINIASKDLLDNELCE 812
           F+ +AE   +I  +  ++LE+  R    WRD+        P+ I +N++   L    L +
Sbjct: 503 FIPLAEHTGLIVPLGRWVLEQSVRQAREWRDRHGGAEALGPLRINVNLSPCQLTHPGLVQ 562

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
               ++ +T   P  + L  +ES ++G  +     L RL ++G+ + LDDFGT  S L+ 
Sbjct: 563 DTVEILERTGMEPDALCLEVTESALIGADDDLLKPLRRLAEMGVDIALDDFGTGYSNLAN 622

Query: 873 LGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  +P   +K + S              + I+  I+ +A +++  +  + +      ++L
Sbjct: 623 LRRLPVSVLKLDRSFTQSMQRFPADPVDLKIVEGIVSLAHSLDLAVTVEGVETGAQAEQL 682

Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952
             +GCD  Q  + A P   + +  L
Sbjct: 683 RILGCDTAQGWYYARPGPPDRLHDL 707


>gi|89094327|ref|ZP_01167268.1| signal transduction protein containing membrane, EAL and GGDEF
           domains-like [Oceanospirillum sp. MED92]
 gi|89081386|gb|EAR60617.1| signal transduction protein containing membrane, EAL and GGDEF
           domains-like [Oceanospirillum sp. MED92]
          Length = 984

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 147/560 (26%), Positives = 257/560 (45%), Gaps = 12/560 (2%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             D E   L    V  S + V   D     V   P      G       G   + +    
Sbjct: 425 RRDEEHIRLLSSTVEQSTNEVIITDTDGIIVYVNPMFTENTGYLPEEAIGRKSSIVQSG- 483

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                 F   L   +  +    + E   R    +  W  + I P+ +  G I  Y+ + +
Sbjct: 484 -EMSAEFYRNLWETIK-KDNCWKGEIINRKKSGEKFWQSMSISPIHDETGAISHYLSLKS 541

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT+QK++   +   A  D LT +PNR   L  + + +D +  +++    V+ +D+D +K
Sbjct: 542 DITKQKEAERQLRYQAEHDLLTKLPNRPVLLAEMDSAIDDA-RNNHCFSAVLFMDLDNFK 600

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG   GD +L  + +R+ + +   D++ARL G+ F II     +  + +  A  +
Sbjct: 601 DVNDTLGHLSGDFLLQLVAKRLEQCISITDVIARLGGDEFAIIQRGIKSKHEPSVLAEKV 660

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +I  P  + +  + +  SIG        + +  +L NA++AMY AK   G+H + F  
Sbjct: 661 INAITTPFRVDDHLLHIGISIGITLIPEDGLETGMLLSNADMAMYEAKAISGSHYKFFDH 720

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               S +    I+  L  A+ N+EL L+  P I +    IVG EAL++W   + G +S +
Sbjct: 721 DLQLSIQRKRLIESHLHNAINNNELNLLLQPKIEIHTGHIVGAEALLRWHSTEIGQVSPA 780

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAE+   I  +  ++L +  + I  W  +    P  I +N+++  L D  L + ++
Sbjct: 781 EFIPIAEKSGQIIELGNWVLNQALQLIKDWCQKGYKIP-KIAVNLSAVQLKDVNLVQDIK 839

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +         ++L  +E+  M +PE S   L  ++ + I+L +DDFGT  S LSYL  
Sbjct: 840 KALEHYQVHSEYLELEITETAAMSDPEFSNSQLSAIKAMNITLAMDDFGTGYSSLSYLAS 899

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D VK + S ++       A  I+ SII + K +  T+IA+ +     ++ L R+GC 
Sbjct: 900 LPIDRVKIDRSFVSDIQHSNEARGIIESIIHLGKILNKTVIAEGVEETEQLELLKRLGCH 959

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q   ++ P+  +  + LL
Sbjct: 960 EAQGYLISRPVASSEFIALL 979


>gi|217969788|ref|YP_002355022.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507115|gb|ACK54126.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 905

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/624 (22%), Positives = 261/624 (41%), Gaps = 20/624 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
                  I + +    R+    +  A   G     +    T +   +A    +    +  
Sbjct: 287 AAGLRAAIAIPLVQDGRMSGCFVLYAGERGFFDEEMTGLITEMAEDVAFALANFEREARR 346

Query: 405 ER-------QSLAVLGSGDIVWDWDIV---RDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           +R          AV  S + +   D        +        I G ++    G    +L 
Sbjct: 347 QRAEEAARLLGRAVEASANGIMITDARQPGNPLIHVNKAFERITGYSAAEALGRNPGFLV 406

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        + + V  +R   +   R    D    W  + + P+ +S G +  ++G
Sbjct: 407 GADP--LQRGLAEVRAAVKAQREA-EVVLRSHRKDGSPFWNELSLAPVRDSAGTVTHFVG 463

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + NDI+E+    E +     +D +TG+ NR    DR+   +  +  D       +++D+D
Sbjct: 464 VINDISERIAYEEALERQNNEDPVTGLANRNLLRDRVGQAIAFARQDGRALVL-LLLDLD 522

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD  L  +  RI + +   D +AR+ G+ F ++L     +   +  A
Sbjct: 523 NFKRINDSLGHDAGDQALKEIAGRIRDCVDACDTVARIGGDEFVVLLTDLAGAQAASLVA 582

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++I  P+ +L REI ++ASIG + +         +L+NA+ AMY AK  G N    
Sbjct: 583 GRILRAIGQPLIVLGREIKISASIGASVFPDDDDGFEALLRNADAAMYRAKDAGRNAFHF 642

Query: 695 FRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +           ++ +  L  A+      L Y P+       +V  EAL++         
Sbjct: 643 YTADMNAEAVRKLEMEGRLRQAIAQDGFVLHYQPVHEAAGARMVAAEALVRMRDENGTIT 702

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+ +AEE  MI A+  ++L    R+   W D        + +N++++   D  L  
Sbjct: 703 PPGEFIPLAEETGMILALGRWVLLAACREARRWLDLGREMQ--VAVNLSARQFNDEGLAA 760

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  ++        +KL  +ES+VM +  ++  +L  L+ + +S+++DDFGT  S L+ 
Sbjct: 761 HIRHCLAAAGLPARLLKLEITESMVMRDVGQAARVLSTLKALDVSVSVDDFGTGHSSLAC 820

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K + S +  +   E   AI+R II +A ++    +A+ +     +  L   
Sbjct: 821 LRRFPLDQLKIDRSFVQDAAQDEDSAAIVRGIIALAGSLRLQTVAEGVETAEQVGFLRSA 880

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           GCD +Q  + + PL  +++ + L 
Sbjct: 881 GCDLLQGYYFSRPLEADTLARRLA 904


>gi|218887388|ref|YP_002436709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758342|gb|ACL09241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 936

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 152/699 (21%), Positives = 289/699 (41%), Gaps = 22/699 (3%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-TLASIVLYYTYFIIYHGMKGYE 335
             H          I  +++   +  Y     A+   I  L ++ +           +   
Sbjct: 243 YHHVLPVERGGISICTVSVGLALDGYRAEQRAAWWHIGALTAMAVLVALATALLLSRTVT 302

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV----- 390
           R VL +  W+   I    +   I     +++   A     +L ++      +        
Sbjct: 303 RTVLRLSGWVR-SIGPGNMGQRIRIDTGDELEGLANAFNGMLDLLEASQRELNEAHRELE 361

Query: 391 LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                 +  +     +  L       + + ++  D     V   P    I G+ + SM G
Sbjct: 362 RRVRDRTAQLCDANAKLHLMGEVFTHAVEGIFITDSAGTVVAVNPAFERITGVDAQSMVG 421

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +   L  +     +  R++ D  + +  G    E R    D       + +  + +  G
Sbjct: 422 RLSPALGMVP---VNGTRSVWDEMLEH--GSWIGETRGPHRDGWQIPQWLSLVSIRDETG 476

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            IL  +G+ +DIT+ K+    I   A  D+LTG+PNR+   + L   +  ++     +  
Sbjct: 477 VILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQ-KLA 535

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND    A GD +L  + RR+   L+  D+L RL G+ F   +   ++ 
Sbjct: 536 VVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDK 595

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      + ++ A P        +VTAS G + +     +++ +L  A++AMY AK  
Sbjct: 596 GHLDGIMRRLFETFAEPFEYGGMGFSVTASFGVSVYPDDGDSANALLSRADIAMYRAKDM 655

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F             + +++  A+   E  LVY PI       +  +EAL++W+
Sbjct: 656 GKNAIAVFCEEQCLEFTRRYRMDQEIKAAIAGREFRLVYQPIADARTLRVRKVEALLRWE 715

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                    S F+ +AE    I+ I   ++E       +WR +     + + +NI+S+ L
Sbjct: 716 RDGAVVAPPSVFIPVAESSNAIREITRLVVEMACVQHAAWRLEGLT--LPVAVNISSRCL 773

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +E    + A ++     P  +++  +E+ +M N ER   +L  LR +G+ ++LDDFGT
Sbjct: 774 NSDETISHIAACLNAYDVPPDALEVEITETSLMQNYERGNAMLCTLRDLGVRVSLDDFGT 833

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL  +P   +K + + +    E+   + I+ +I+ +A+++    +A+ +     
Sbjct: 834 GYSSLQYLARMPIHALKIDRTFVQELLEEGGSLEIVETILGLARSLRLATVAEGVETAAQ 893

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +  L  MG DY+Q   +  PL  + IL L +    LV  
Sbjct: 894 LSALRGMGVDYLQGYCLGRPLPADDILTLCRRGMRLVPR 932


>gi|160875961|ref|YP_001555277.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160861483|gb|ABX50017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS195]
 gi|315268156|gb|ADT95009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS678]
          Length = 1419

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 130/560 (23%), Positives = 257/560 (45%), Gaps = 19/560 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 859  QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 916

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 F T + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 917  E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 972

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ +++           +MV+D+D +K+
Sbjct: 973  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1027

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  +  RI  LL     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1028 INDSLGHQIGDTLLKLVAARIKSLLPKNTSIYRLGGDEFAIVLDKNSDISASAAIANRII 1087

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            + +     +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1088 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1147

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   +++    + Y P + L   +I G+EAL++ +HP  G I  ++
Sbjct: 1148 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1207

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1208 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1266

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1267 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1326

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1327 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1386

Query: 935  IQDSHVASPLGFNSILKLLK 954
            IQ    +  +       LL+
Sbjct: 1387 IQGYIFSKAIKETEFTLLLQ 1406



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 2/154 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
             IV+ I + V + +L      + I    ER  L++ GSGD +WDWDI    +  +    
Sbjct: 711 AAIVLFISYLVTKAILRRRETQRQIVLSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWG 770

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             L            +    IH  D++  R  L+          +  +RV+  D+ + W+
Sbjct: 771 A-LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWI 829

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
           + R + +  +   + LR  G   +I++ K+  E 
Sbjct: 830 LDRAKIVERDEKDNALRMTGTIKNISQFKQKEEQ 863


>gi|88858053|ref|ZP_01132695.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2]
 gi|88819670|gb|EAR29483.1| hypothetical protein PTD2_11724 [Pseudoalteromonas tunicata D2]
          Length = 745

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/564 (24%), Positives = 268/564 (47%), Gaps = 17/564 (3%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            I S  ER +L    V    D +   D   + +   P      G                
Sbjct: 182 RIKSTEERLNLFAKCVENLSDAIAICDRNFNIIDINPSFLRFFGKQRDHYINKPF----K 237

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H   ++++   L +F+   +G  Q E ++   + +   + + I  + NS G +  ++ +
Sbjct: 238 LH-GYKESYIEKLKTFLL-DKGHWQEELKLPNENKELMPIDLSIDVVKNSTGKVTHFVVL 295

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +DI+E+KK+   +   + +D LTG+PNR  F   L  +             ++V D+D 
Sbjct: 296 YSDISERKKAESELQRLSNRDRLTGLPNRNLFFTNLKKL-----GAQKCHHALLVFDLDN 350

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KKIND LG  +GD +L  L  R+ +L +  D   RL G+ F ++++  N+  KI   A 
Sbjct: 351 FKKINDSLGHQLGDMLLCRLANRLIKLTRQQDSFYRLGGDEFALVIVGTNDIHKITSTAK 410

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
                I  P ++   E+ +T+S+G   +     T   +LKNA+ AMYHAK +G      +
Sbjct: 411 EFLHEITQPFHMAGHELVITSSVGVVLFPEDGNTPEILLKNADTAMYHAKQQGNRYLFFN 470

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R+ I+  +   ++     + Y P +     E+VG+EAL+++  P  G IS 
Sbjct: 471 DTMNRQAVKRLQIENLMRFGLKEDHFCVYYQPKMNTETNELVGMEALVRFITPNKGLISP 530

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+ IAEE   I  I   +L++   D+  W ++       + +N+++K     +L   +
Sbjct: 531 AQFIPIAEETGQIIEIGEVVLDKACADVKRWLNKGLFSG-RVAVNLSAKQFALPDLTARI 589

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ K       ++L  +E  VM +P+ +  ++  L   GI L +DDFGT  S L+YL 
Sbjct: 590 DAILQKHSLPSYFLELEITEGTVMDDPKEAIAIMKSLSARGIHLAMDDFGTGYSSLAYLK 649

Query: 875 YIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P +T+K + + +   + +R   ++ SI+ +A N++ +++A+ +     +  L+ + C+
Sbjct: 650 QFPLNTLKVDKAFIDDMSTERGRNMVDSIVTIAHNLDLSVVAEGVEYAEQVHILSELNCE 709

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            IQ  + + PL      + L+++ 
Sbjct: 710 TIQGYYYSKPLSAEHFEQFLEKQQ 733



 Score = 85.8 bits (211), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 8/193 (4%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           A ++     + L    T+  +    Q       +LI +L+ F+++  +       + +  
Sbjct: 8   AVLVTLCAQLALNSFPTQSHEVSFAQSVYFIPAMLIAMLLPFSLLT-IYKLIRSQKKLQI 66

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
             +R   + LGSGD +WDW+IV   +T                      N    IH  D 
Sbjct: 67  SEDRLKSSFLGSGDTLWDWNIVTGELTRINDGQF----FEQDKNVTTPPN-RKNIHPQDL 121

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDIT 520
                +L           +  +R +    ++ W++ R + + ++      R  G   DI+
Sbjct: 122 PKVELLLKQHFSGHTAFFEASYRTKDNLGRWRWVLDRGKVIETDPQLKPTRMTGTVKDIS 181

Query: 521 EQKKSLEGILCNA 533
             K + E +   A
Sbjct: 182 RIKSTEERLNLFA 194


>gi|327480416|gb|AEA83726.1| sensory box/GGDEF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 708

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 152/574 (26%), Positives = 260/574 (45%), Gaps = 10/574 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           I+ + A     + +     R       + + ++        +   P +A I G  ++  +
Sbjct: 134 IEDITAQRAVLEALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSASEL 193

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              + +    +++      R      +      L +E  V   D    W+      +   
Sbjct: 194 VADMADIERRLYVQ--PGRREAFCQLMEQHGEVLNFESEVYRRDCTRIWISENAHVVRGP 251

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG+ + Y G   DI+E+K   + +   A  D LTG+PNR    DR+   L  +A      
Sbjct: 252 NGEFICYEGTVQDISERKHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARAARL-GYY 310

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            T++ ID+D +K IND LG   GD++L S+  R+   L+  D +AR+ G+ F ++L    
Sbjct: 311 LTLVFIDLDNFKFINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVLVLGDHY 370

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               +      +   I  P  L  RE  V AS+G A +      +  +LK+A++AMY AK
Sbjct: 371 RISTVISLLERVLNEIRRPATLAGREFQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAK 430

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N+ + F     R   +R+ ++  +  A+E  E  + Y P +      IVGLEAL +
Sbjct: 431 KRGRNNFQFFTHDLNRIADERLNLEAAMRTALERDEFAVHYQPKVDAQ-RRIVGLEALAR 489

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W H   G I    F+ +AEE  +I  + L +L R   D   W       P+ + +N++  
Sbjct: 490 WTHADLGVIGPDRFVPVAEESGLIMPLTLAVLRRAFSDARRWNA-GRQVPLLVAVNLSPL 548

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L +++ E + A++ +   SP  ++L  +E+V +G+  R+  +L   +  G  L +DDF
Sbjct: 549 LFLGDDVVERVMAMLDEVGLSPLLVELEITETVFLGDGSRAVSILADFKARGFRLAMDDF 608

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L YL   P D +K + SL+TG  ++     I R+ I + K++  T++A+ +   
Sbjct: 609 GTGYSALGYLRRFPLDIIKIDRSLVTGLEQEDEVAMIARAAISLGKSLHKTVVAEGVENA 668

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + L   GCD  Q   ++ PL    I  LL  
Sbjct: 669 AQFEFLRHNGCDEFQGYLLSRPLPATGIDALLAA 702



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            VL        + ++ E   +A     D  W        +  +     + G ++ ++   
Sbjct: 16  EVLDRSRVLDTLVNNLE--GMAYRCRNDASWT------MIFVSQGSLGLCGYSAAALVDD 67

Query: 449 IR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +W    H +DR   R  +D  +    GR    +R+R A     W+I R   + +  G
Sbjct: 68  AEVSWEQITHPDDRARVRRSIDGAIAA-LGRFTVHYRIRTAAGFIKWVIERGVAVPDEQG 126

Query: 508 DILRYIGIANDITEQKKSLE 527
           +I+   G   DIT Q+  LE
Sbjct: 127 EIV-VEGFIEDITAQRAVLE 145


>gi|47568074|ref|ZP_00238779.1| sensory box protein [Bacillus cereus G9241]
 gi|47555228|gb|EAL13574.1| sensory box protein [Bacillus cereus G9241]
          Length = 562

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/564 (24%), Positives = 254/564 (45%), Gaps = 28/564 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 301 FFTGELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALARCSTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPDEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
             MGCDY+Q  + A PL    + K
Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKK 561


>gi|228983830|ref|ZP_04144025.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228775879|gb|EEM24250.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 568

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 255/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 301 FFTGELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALARCSTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPDEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIGVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + K L
Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKKKL 563


>gi|269925324|ref|YP_003321947.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269788984|gb|ACZ41125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 718

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/576 (24%), Positives = 277/576 (48%), Gaps = 11/576 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +IQ V  T      +  +  +  +A   +   +W+ D    +   +     I GL 
Sbjct: 144 LILMLIQDVSLTESLRVQLEIEHAKIEIAERVANLGLWERDTSTGQEVWSDQTFKIYGLK 203

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            GS+       L  +H +DRD   +     +          +R+   D+    +  + + 
Sbjct: 204 PGSLEPSYEYLLRIVHPDDRDRVDSAYRDSIKALSA-YDVSYRILLPDSSIRVVHSKAQI 262

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +  ++  +L   G   D+TEQK + E +L  A  D LTG+PNR     +L  +L    ++
Sbjct: 263 VKGADSHLL-LTGTVQDVTEQKVNEESLLRQALHDPLTGLPNRVMLGQQLEKLLA---SN 318

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +    V+ +D+D +K +ND LG   GD +LV++ RR+   L+  D  AR  G+ F +++
Sbjct: 319 RSRSIAVLFLDLDNFKAVNDNLGHQAGDSLLVAVARRLSANLRPTDFAARFGGDEFTVVV 378

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +   +   A  + +SI+ P ++    +  + SIG A  +SS+ ++S +L+ A++A+
Sbjct: 379 TKVKSIDYVVSIAKRIIESISQPFDIAGERVYTSTSIGIALCSSSEDSASSLLRKADIAL 438

Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y +K  G      F   +    S+ + ++ +L  A++N +  + Y PI+     ++  +E
Sbjct: 439 YKSKSLGRGTYVIFDQSMEQEASEILELERNLRTAIQNDQFIVHYQPIVDAATGKVEMIE 498

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+ P  G +S  +F+ IAEE+ +I  +   +L +        +       I   IN
Sbjct: 499 ALLRWNSPN-GILSPDKFIPIAEEVGLINTLGELVLNKACEQTAYLKATTGAKFIT-SIN 556

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++K L        +++++ K    P  ++L  +E+ ++   E     L  ++ +GI + 
Sbjct: 557 VSAKQLRQPHFTNNLESMLHKYDLQPKDVQLEITENALVEEVECITNALKEIKTLGIRIA 616

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL  +P D +K + S +      E+  AI+ +II +A +++  IIA+ 
Sbjct: 617 IDDFGTGYSSLSYLRKLPIDLIKIDQSFVKMLPNDEEHRAIIYTIISLACSLDLEIIAEG 676

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +   + L  MGC +IQ + ++ P+   SI  +L
Sbjct: 677 VEEKSQREILLSMGCKFIQGNLISHPVDLESIKLIL 712



 Score = 38.8 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 18/142 (12%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA-----------VLGSGDIVW 419
           ++   VLI+IL+       +L      +   SD E   L            +  +   + 
Sbjct: 1   MLQNEVLIIILLAVLGTATILGISASKRTRTSDKESSKLVSATALTHLEACLDAANIPML 60

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI-LDSFVGYRRGR 478
             D        +  +  ++     ++ G   + L  IH  D++  + + L     +   +
Sbjct: 61  IIDQNLSISYASKSLQNLINFVPKALIG--ASLLELIHREDQETAKELILQQNQAHEVSQ 118

Query: 479 LQYEFRVRAADNQFHWMIIRIR 500
              + R RA D    W+ +R  
Sbjct: 119 ADVKLR-RAGDG---WIRVRAY 136


>gi|91779130|ref|YP_554338.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans LB400]
 gi|91691790|gb|ABE34988.1| Putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Burkholderia xenovorans LB400]
          Length = 1059

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 146/557 (26%), Positives = 264/557 (47%), Gaps = 13/557 (2%)

Query: 404  GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             +R  L       S + +   D  R  VT         G  + ++ G    +L      D
Sbjct: 501  EQRLELWGKVFEASSEAILILDAQRRLVTANASFYRATGYRADNVTGKEPAFLFGT--QD 558

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             D+    +   V  R      E  VR      +   + +  + +   ++  YI    DIT
Sbjct: 559  HDDILPAVIDSVD-RLSVWHGEAHVRRRAGSDYPAWLMVSAVRDRRANLSHYICTLIDIT 617

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++KKS   I   A  D LT +PNR+ F+ RL  +L  +      R  V+ ID+D++K IN
Sbjct: 618  DRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQ-RVAVLFIDLDRFKNIN 676

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMRK 639
            D LG  +GD +L S++RR+ + ++  D ++RL G+ F +IL S +N+  +       +  
Sbjct: 677  DSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSNAADVTRTIEERLLP 736

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +  P  +    + V+ S+G A +         +++NA+ AMY AK  G N V+ F    
Sbjct: 737  LVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPDI 796

Query: 700  --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ ++  L  A+   E  L Y P +     E+V +E L++W+ P+ G +S ++F
Sbjct: 797  AERTRYRLTLEACLRSAIAMHEFRLEYQPCVDAHTGELVAVEGLLRWNSPQIGIVSPAQF 856

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE+  +I  I  +++    + I +W D   + P+ + IN+++  L D +L   +   
Sbjct: 857  IPVAEDTRLIIPIGAWVINEACQQIAAW-DAEGLTPLRVSINLSAIQLRDPDLIGTLADS 915

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +++   +P R++L  +E+V+M N E    ++  +R +G+ L+LDDFG   S LSYL   P
Sbjct: 916  LARHGVAPWRLELEITETVLMDNAENYLTMINAIRALGVKLSLDDFGIGYSSLSYLNRFP 975

Query: 878  FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + + +    + R   AI+R+II +   +   ++A+ +  E   + L  +GCD +
Sbjct: 976  LDRLKIDRAFVLDMLDARADLAIVRAIIELGHELGLRVVAEGVESEHQARILRTIGCDEL 1035

Query: 936  QDSHVASPLGFNSILKL 952
            Q    +  L    +   
Sbjct: 1036 QGFLFSKALSPADLWSW 1052


>gi|299135305|ref|ZP_07028496.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590282|gb|EFI50486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 830

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/632 (24%), Positives = 276/632 (43%), Gaps = 38/632 (6%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
             W+ +      L       L            + + V   GFT+  +V   G     I 
Sbjct: 204 LRWLRLSAGTHLLSFT--NVLAQLAEATGAAANVQIEVEGDGFTLKLNVAPVGDMLSVIL 261

Query: 402 SD------GER-QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGP--IRN 451
           +D       ER   L    +   +W +D    + +          G    +  G   +  
Sbjct: 262 TDITDLKRRERSFRLLFDANPMPMWVFDAQTKNFLNVNDAAIRHYGYDRATFLGMNLLDI 321

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA--ADNQFHWMIIRIR--PMSNSNG 507
           W       D    R    S +       Q     R   AD     ++   R  P    +G
Sbjct: 322 W-----PEDE---RQAHASVLDEVGDIYQSTHNWRHMKADGSKIEVLTFGRRVPFEGKDG 373

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               ++  A DITE++++   I   A  DNLTG+PNR  F + L   L+ S    + R  
Sbjct: 374 ----FLVTAVDITERRRAEARIAYMAHHDNLTGLPNRVKFREHLDQALERSD-GSDERIG 428

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K +ND  G  VGD +L  +  R+  ++    ++ARL G+ F +I+      
Sbjct: 429 VLCIDLDMFKNVNDSFGHPVGDRLLKMVAERLHAVIPADSLVARLGGDEFAMIVKRNPMP 488

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             + D +  +   ++ P  +   E+ + AS+G A      +T  ++L+NA++A+Y AK  
Sbjct: 489 RDLNDLSAILIADVSAPYAVDGLELVIGASVGIAMSPGDGVTGDDLLRNADMALYRAKSE 548

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG     F          R  ++ DL  A+ N E  L Y P++ +    IV  E+LI+W 
Sbjct: 549 GGGAHCFFEQEMDRQAQTRRALEFDLRHALANGEFELHYQPLVDVAANRIVAFESLIRWR 608

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S +EF+ +AE++ +I  +  ++L     +   W        I + +N++    
Sbjct: 609 HPERGMVSPAEFIPVAEDIGLIVTLGEWVLREACTEAAKWPA-----DIKVAVNLSPIQF 663

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L + + A ++ +  +P+R++L  +ES+ +   E +  +L +LR +G+ +++DDFGT
Sbjct: 664 RSRNLVQTVIAALAHSGLAPTRLELEITESLFLAETEANLAMLHQLRSLGVRISMDDFGT 723

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFD +K + S +    E+    AI+++I  + +++  +  A+ +  E  
Sbjct: 724 GYSSLSYLRSFPFDKIKIDRSFVRDLAEREDCVAIVKAISGLGQSLNISTTAEGVETEDQ 783

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++ L  MGC  +Q    ++      I  LL  
Sbjct: 784 LERLRAMGCTEVQGFLFSAAKPGVDIAGLLDR 815


>gi|319763179|ref|YP_004127116.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330825242|ref|YP_004388545.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|317117740|gb|ADV00229.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329310614|gb|AEB85029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 597

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/598 (23%), Positives = 262/598 (43%), Gaps = 42/598 (7%)

Query: 387 IQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-A 441
           + H LA         +  +R    Q   +  +G  +         +      A I GL +
Sbjct: 1   MSHPLAALAPGLASSTALQRILREQQALLDSAGVGIAFIRNRT-VLRCNQHCANIFGLAS 59

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRI 499
              + G        +H + RD FR +  +      R    + + ++R +D +  W  +  
Sbjct: 60  PEEVVGRSS---EGLHPS-RDAFRELGRAAFPDLSRGLAYRTKRQLRRSDGRLFWAHLTG 115

Query: 500 RPMSNSNGDILRYIGIANDITEQKKS----------------------LEGILCNAFQDN 537
           R + N +      + I +DI  Q+ +                       E I   A  D 
Sbjct: 116 RLI-NPHDSGEGSLWIIDDIDAQRHARALLDSAMVSRLQREIEDRRSDQERIYRMAHYDA 174

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PNR    +R    + L+  +      VM +D+D +K +ND LG  VGD +LV + R
Sbjct: 175 LTQLPNRVLLAERGEEAIRLAQEN-GTPLAVMFLDLDNFKHVNDSLGHRVGDALLVEIAR 233

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   ++  D +ARL G+ F ++L    N+      A  M+++   P+ +   E+++  S
Sbjct: 234 RLQGTVRERDTVARLGGDEFVLLLPR-ANAQGAERVAAKMQEAAMQPVQVGHHELSLALS 292

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAV 715
           +G A +         +++ A+ AMY AK  G N+   F           + +   L  A+
Sbjct: 293 MGIALFPEHGSDFETLIQCADTAMYRAKAGGRNNYCFFTPQMQEQSARALQLTNALRRAL 352

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E ++L L Y P + L    + G+EAL++W+HP+ G++S +EF+ +AE+  +I  I  ++L
Sbjct: 353 ERNQLSLHYQPQVALPTGRVHGVEALLRWNHPELGSVSPAEFIPVAEDSGLILPIGEWVL 412

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                 + +W      P + + +N+++  L   +L + ++ L+ +   +   ++L  +E+
Sbjct: 413 RTALAQLQAWHAAGL-PRLTMAVNLSATQLRQPQLPQMVEHLLHEHRIAAHMLELELTEN 471

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
           V + +P  +   + +L  +G+ L++DDFGT  S LS L       +K + S +       
Sbjct: 472 VAVDDPHTAIASMEQLHTMGVRLSMDDFGTGYSSLSQLKRFQIYRLKIDQSFVRDLDHDG 531

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              AI+ +II MA+ +     A+ +     +  L   GCD  Q  + + PL    + +
Sbjct: 532 NDRAIVSAIIRMAQALGMRTTAEGVETADQLAFLREQGCDEAQGYYFSRPLPAAELER 589


>gi|217958216|ref|YP_002336760.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|217064052|gb|ACJ78302.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 567

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 257/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L + +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+V+ + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 LSVRSILRRTGFPANRLILEITESIVVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|324324668|gb|ADY19928.1| sensory box, GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 568

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/570 (24%), Positives = 257/570 (45%), Gaps = 28/570 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKRE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             MGCDY+Q  + A PL    + + L   F
Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKEKLTTDF 567


>gi|313681961|ref|YP_004059699.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154821|gb|ADR33499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 571

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/555 (25%), Positives = 269/555 (48%), Gaps = 13/555 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH-INDRDNF 464
            S A+  S + +   +             TI G +   + G   +     ++     D  
Sbjct: 22  LSHALQQSANGIIITNSSGVIEYVNQAFVTINGFSESELIGTTPKKMKSGLNSPELYDEM 81

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            + +      +    + EF+ R  +   +W    I P+ + N +I  YIGI  DI ++K 
Sbjct: 82  WSTI-----TQGYTWKGEFKNRKKNGAIYWCFETISPVFDDNNNITHYIGIIEDIQDRKT 136

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E I   A  D LT +PNR  F D L + ++ + +       ++ ID+D++K +ND LG
Sbjct: 137 TEEHIRHLAKFDPLTNLPNRNFFRDELESRINQANSSSQY-FGLLYIDLDRFKMVNDSLG 195

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L  L  R   + +    + RL G+ F +I    ++   +  FA  + ++I  P
Sbjct: 196 HTVGDRLLQKLAERFTSINEQNHFIVRLGGDEFAVITALVDSKKTVEMFAKNVHEAIKTP 255

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702
             +   +I +TASIG A +      S  ++K A++AMY AK  G N    F  +   F S
Sbjct: 256 FVIDNNDIYMTASIGIALYPQDGENSELLIKAADMAMYGAKINGKNTYLFFEPTKGDFAS 315

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + ++I+  L  A++N+EL+LVY P     +++ +GLE L++W  P+ G ++  +F+ IAE
Sbjct: 316 ETLIIENGLRKALKNNELFLVYQPKWDTKEDQFIGLEVLVRWQSPELGFMNPGQFISIAE 375

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L+     ++         P  I +N++     ++ L   ++ ++ +T 
Sbjct: 376 ETDLIIVLGEWILKEALNSMMELSKTIGFIP-KISVNLSPVQFRNSALNTTIKEILEETR 434

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +   +++L  +E  ++ NP+ +   +  L  +GI+ ++DDFGT  S +SYL   P  T+K
Sbjct: 435 FPAEKLELEITEGALVINPKMAIEKMNDLVNLGITFSIDDFGTGYSSMSYLKKFPVSTLK 494

Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    S  +  AI+ +II +A ++E   IA+    +  +  L  +GC  IQ    
Sbjct: 495 IDKSFVDDVVSDHQDRAIIEAIITLAASLEMKTIAEGAETKEQVDILNFIGCYAIQGYWH 554

Query: 941 ASPLGFNSILKLLKE 955
           + PL + +++   ++
Sbjct: 555 SRPLDYTALMAYFQK 569


>gi|229131569|ref|ZP_04260454.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228651887|gb|EEL07839.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 569

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S  +   LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCEISKYKREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      + +   ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTHDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CD++Q  + A PL    + + L
Sbjct: 540 KSMSCDFVQGFYYAKPLDIGELKEKL 565


>gi|91975244|ref|YP_567903.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681700|gb|ABE38002.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 905

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/605 (23%), Positives = 259/605 (42%), Gaps = 18/605 (2%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
               R    ++  A     +++ +++   + +           +  D +R + A+     
Sbjct: 308 LAAWRKQTRLLISAATISALVVSVILLLIIREIGKQHHATEARLALDKQRLNTAINNMSQ 367

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYR 475
            +  +D     V        + GL+   +  P  ++   I H     +F+  +D +    
Sbjct: 368 GLLLFDAHARLVVCNQRYIQMYGLSP-EVVKPGCSYRDIIAHRQALGSFKGNVDEYCSRS 426

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              +  E            + I   P+         ++    DITE+ +  E I   A  
Sbjct: 427 IQSVIVEKTTAIHGLNERSVQISSLPVPGG-----GWVSTHEDITERLRDGEKIAYLAHY 481

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT +PNR  F  RL   L+ +         ++ IDID++K IND LG  VGD++L  +
Sbjct: 482 DSLTDLPNRSLFRQRLERKLEGAQR--GASFALLYIDIDEFKSINDTLGHPVGDELLKQV 539

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+   +   + +ARL G+ F I+     +S +  + A  + ++I  P   L   ++  
Sbjct: 540 AVRLQACVGEDEFVARLGGDEFAIVTNGAGDSDQATEMAERILQAIRTPYQCLGHRLSTD 599

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
           ASIG A          +++KNA+LAMY AK  G      F+         R  ++ DL  
Sbjct: 600 ASIGIAIAPRDGDDIDQLVKNADLAMYGAKAHGRRTFRFFQPEMDAVARARRQLEFDLRS 659

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+ +    + Y P++ L   +I G EAL++W HP  G IS  EF+ IAE+  +I  I  +
Sbjct: 660 AIADDAFEIHYQPVVDLRSNKITGCEALLRWRHPTRGMISPGEFIPIAEDTGLINEIGGW 719

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            L     + + W D      I + +NI+        L   + +++  T     R++L  +
Sbjct: 720 TLAAACAEAVQWTD-----DITLAVNISPVQFRQPTLALLVASVLGSTGLPARRLELEVT 774

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           E+V++ + + +   L +LR +G+ ++LDDFGT  S LSYL   PFD +K + + +     
Sbjct: 775 EAVLIHDDDAALTTLNQLRALGVRISLDDFGTGYSSLSYLQRFPFDKIKIDRAFVDSIDN 834

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +   AI+ +++ +A +   T  A+ +        L  +GC  +Q    +          
Sbjct: 835 ADGSTAIIEAVVNIAASRHMTTTAEGVETVRQRDILRALGCTQMQGYLFSPATPAPKFRA 894

Query: 952 LLKER 956
           LL + 
Sbjct: 895 LLTKH 899


>gi|296536005|ref|ZP_06898148.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296263671|gb|EFH10153.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 720

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/589 (23%), Positives = 255/589 (43%), Gaps = 12/589 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIAT 436
           VI      ++  L     ++       R +LA  +     ++   D     V      A 
Sbjct: 136 VIQRRAESLEQALQHSTRAREEMLRDSRAALAQVIDTVPAMISAADRQGRCVFVNAAQAE 195

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G    ++ G     +       R      L       +     E      D Q     
Sbjct: 196 FAGTTPDALAGQPIEQMFGRERAARSRALDAL--VFETGQPLPGREEETEGPDGQARIFS 253

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               P+ N+ G+++  +  + +IT++K +   +   A  D LTG+PNR    DRL   L 
Sbjct: 254 TTKAPLHNARGEVVAVLTTSLEITDRKLAERRLGHMAHHDALTGLPNRAFLRDRLRRELA 313

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                D+    ++ +D+D++K +ND LG  VGD +L ++ +R+    +  D++ARL G+ 
Sbjct: 314 RGRRGDHA-FALLFLDLDRFKAVNDALGHHVGDALLRTVAQRLKATARAEDLVARLGGDE 372

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+  +       A  A  +  ++A P++     ++  ASIG            E+L+N
Sbjct: 373 FAIVQTAIQGPEDAAALAQRIMAALAAPVDADGHSLSAAASIGITLSPRDGADPDELLRN 432

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LAMY AK  G +    F   + +   + + I+ +L  A+   E  L Y P + L    
Sbjct: 433 ADLAMYRAKAEGRHGWRFFAAAMDARAREAMRIEAELRAALGRGEFELHYQPQVELRGNR 492

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EAL++W     G      F+ IAEE  +I  IN ++L    R   +W  +   PP+
Sbjct: 493 VTGAEALLRWRRHGHGLCGPGSFLAIAEETGLIVPINEWVLREACRQAAAWAAEGL-PPV 551

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++       ++   +  ++  T   P R+ L  +E ++M     +   L  LR +
Sbjct: 552 RMGVNLSPVQFRRQDVRALVAQVLDDTGLPPDRLDLELTEGILMEQDAATAAGLQALRAL 611

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G+ +++DDFGT  S L+Y+   P D +K + S + G T      AI+R+I+ +   +   
Sbjct: 612 GVRVSVDDFGTGYSSLNYVKNFPVDRLKIDQSFVRGMTSEPNDAAIVRTIVDLGHMLRLQ 671

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           ++A+ +  E  +  L   GCD +Q  + +  L      +LL++  P  +
Sbjct: 672 VVAEGVETEAQLARLRAEGCDEVQGFYFSEALPAEGFARLLRQ--PGAR 718


>gi|229010055|ref|ZP_04167269.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
 gi|228751188|gb|EEM01000.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
          Length = 569

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 260/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S  +   LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCKISKYKREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      + +   ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   + + ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTNDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CD++Q  + A PL    + + L
Sbjct: 540 KSMSCDFVQGFYYAKPLDIGELKEKL 565


>gi|328949559|ref|YP_004366894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Marinithermus hydrothermalis DSM 14884]
 gi|328449883|gb|AEB10784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Marinithermus hydrothermalis DSM 14884]
          Length = 1053

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 125/564 (22%), Positives = 254/564 (45%), Gaps = 16/564 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             + V       + +    +R    V  S DI +  D        +P +  +LG     + 
Sbjct: 496  FRDVTRQKRLEEALRRSKQRFRALVQHSSDITYVLDARGQVRYVSPSVQELLGHPPRKLT 555

Query: 447  GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            G    ++  IH  DR      L+  + +    L +EFR R  D  + W+ +R + +   +
Sbjct: 556  GRP--FIELIHEADRGEADQALERVLQHPGKLLIHEFRARHGDGTYRWLEVRGKNLL-HD 612

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
              +   +  A D+T++K+    +   A+ D LT + NR+   +R    +  +        
Sbjct: 613  SSVRGIVINARDVTQRKRYEAQVEQLAYYDPLTQLANRRFLQERAQQAITHARRYGE-SL 671

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             ++ +D+D++K++ND LG   GD++L  +  R+   ++  D LARL G+ F ++L  E  
Sbjct: 672  ALLYLDLDRFKQVNDSLGHEAGDELLAQVAARLRRFVRESDTLARLGGDEFVLLLT-EAG 730

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              + +  A  + K++  P ++    ++V  SIG A +     T   +++ A+ AMY AK+
Sbjct: 731  QEEASRSAERLVKALRQPFSVRGHTVSVEVSIGIALYPQDGSTFETLMRRADAAMYRAKN 790

Query: 687  RGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                    +   +        ++ +L  A++   L L Y P+  + D+ +VG EAL++W 
Sbjct: 791  EHRGFQFYAPDPAHPPQTPAELEVELRRALQEGGLVLHYQPVRAVEDQRLVGREALLRWW 850

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G +  + F+ +A++  + + ++ ++L++  R   +W         ++ +N+++  L
Sbjct: 851  HPQHGELRPAHFLPLAKQAGLGRELDRWVLQQAVRQSSAWPASQ-----WVAVNLSTPSL 905

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             D E    ++ L+      P R+ L  +E   +     +   L  L+ +G+ L LDDFG 
Sbjct: 906  CDPEFPRYLEGLLETHALPPQRLLLEVTEDQALH---EAGDALQALQSLGVRLALDDFGK 962

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              + L  L  +  D +K +   + G     K  ++ R++I +A ++    +A+ +     
Sbjct: 963  GRAALEGLQGLAVDLLKIDREFIQGLPHHPKDASLSRALITLAHHLGARALAEGVETPAQ 1022

Query: 924  IKELTRMGCDYIQDSHVASPLGFN 947
            ++ L   GCD +Q      P    
Sbjct: 1023 LEWLRAAGCDLVQGYLTGRPEPLA 1046



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 S+  R+  A+    D+V   D              +LG +    +         
Sbjct: 77  LEHAQRSETAREHAALNAVEDLVLHTDRDGRVDYLNAAAEHLLGRS----NARNLTLEAL 132

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +    R      +  +  +L  +   +       W+ + +RP+++ +  +      
Sbjct: 133 LAPQNPALLREAFQHALQGKTVQLS-DLLCQDRYGTPLWLELTLRPLTDRHRAVCGVRVT 191

Query: 516 ANDITEQKKSLEGILCNAFQDNL 538
             + T  K+           D L
Sbjct: 192 GRNTTFHKRVE---TVLRQYDRL 211


>gi|163938551|ref|YP_001643435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|229165570|ref|ZP_04293346.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|163860748|gb|ABY41807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|228617897|gb|EEK74946.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 567

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S  +   LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCKISKYKREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      + +   ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTHDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 360 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CD++Q  + A PL    + + L
Sbjct: 538 KSMSCDFVQGFYYAKPLDIGELKEKL 563


>gi|317129698|ref|YP_004095980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474646|gb|ADU31249.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 607

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/582 (23%), Positives = 278/582 (47%), Gaps = 17/582 (2%)

Query: 388 QHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           Q    +    Q +    E    R  +A+  +  IV   D        + +   +L  +  
Sbjct: 32  QEKQPSIESDQALDQQYEQLISRFKIALETTALIVLVNDT-GAITYVSEEFCDLLDYSES 90

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G   N+L   H + ++    +  + +  ++    +E            +  +I P+ 
Sbjct: 91  ELIGV--NYLSLQHRSFKER--ELFSNTLASQKIT-SFEMIPLKKSGNPLILKTQIMPLI 145

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            SN +   ++ +  D+T  K++ + I      D LTG+PNR  F   + + +++    + 
Sbjct: 146 KSNQESDIFLIMHRDVTRLKQAEKVIKELGAVDTLTGLPNRDKFERDVRSRIEM-KHAEK 204

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++  D+D++K  ND LG   GD ++ S+++ +  +      + R  G+ F ++  S
Sbjct: 205 FPFAILFFDLDRFKFYNDTLGHFTGDKLIQSISQTLSSIQHKKVQIYRYGGDEFSVLFHS 264

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  ++ + A  +  +   P ++   E+ +TASIG + +    +T  ++++ AE+AM++
Sbjct: 265 PKSKEEVQELAQEILLAFESPFHVKGNELYITASIGISYFPVIGVTYDQIIQQAEMAMHY 324

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G    + ++ S        +++++ L +A+E     L YHP I L + +++G+EAL
Sbjct: 325 AKELGKGDFQWYQSSIRTEHDEKLLMEKRLRIAMEQENFELYYHPQIDLKENKVIGVEAL 384

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+  + G +S  +F+ IAEE  +I  I  ++LE+       W ++ +   + I INI+
Sbjct: 385 LRWNDEQLGKVSPYKFIPIAEETGLINQIGDWVLEKACIQAKKWNNEGHE--LRIGINIS 442

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +     +    ++  + KT  SP  + L  +E+ ++ N +     L RL++ G+S+++D
Sbjct: 443 PQQFQRPDFVSKVKNTLDKTGLSPKLLDLEITENDLLYNRDECLKTLYRLKQFGVSISID 502

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P DT+K + S +          AI+ SII +A N++  +IA+ + 
Sbjct: 503 DFGTGYSSLSYLRRFPIDTLKIDQSFIKEVVDNTNDQAIVTSIIQLAHNMKLRVIAEGVE 562

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
               +  L ++ CD +Q    + PL   ++ K ++   P +K
Sbjct: 563 TSEMVAFLNKLSCDEMQGFLYSQPLPPEAVTKYIESTSPSMK 604


>gi|121594373|ref|YP_986269.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax sp. JS42]
 gi|120606453|gb|ABM42193.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax sp. JS42]
          Length = 1299

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/574 (24%), Positives = 252/574 (43%), Gaps = 11/574 (1%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +  +       Q +    E  SL +  +   +WDW++    VT       + GLA     
Sbjct: 701  LHDITERKQTEQRVREREELLSLTIEAAALGLWDWNLPSCEVTGDARWRAMYGLAPVEPG 760

Query: 447  GPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
                 +W   I   D D     L   +            V A      W+    + +  +
Sbjct: 761  ASAAVHWASGITPEDIDVVTQELRRHLQEPHKPFDVTCEVLAPQGDGRWIRSVGKVVAYD 820

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            + G   R +G++ D++ Q++    +   A  D LTG+PNR     RL   ++ S      
Sbjct: 821  AAGQPARMVGMSIDVSSQRQQERQLERMAHYDALTGLPNRVMLERRLRAGMEHSRARGQ- 879

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            +  V  +D+D +K +ND LG A GD +LV +  R+   L+  D +ARL G+ F I+L   
Sbjct: 880  QLGVAYLDLDGFKPVNDRLGHAAGDRLLVVVAERLKRALRLTDSVARLGGDEFVILLSGL 939

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             ++ +       + +S+A P  L    + VTASIG+  +   +  +  +L++A+ AMY A
Sbjct: 940  AHAEECERRLHTVMESVAAPYTLDGERVLVTASIGYTLYPDDEADADTLLRHADQAMYAA 999

Query: 685  KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K  G N    F  +  R+ ++  ++  +L LA++  EL L   P + +    +VG EAL 
Sbjct: 1000 KQAGRNRFHGFDAAEERARQLRREQCGELLLALQRGELTLFLQPKVDMRLGTVVGAEALA 1059

Query: 743  QWDHPKWGNISSSEFMLIAE-ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W HP+ G +S   F+ + E    +      ++++   + I     Q     + + INI 
Sbjct: 1060 RWQHPERGLLSPVHFLHLIEGHAELQMRFGEWVVDTALQQIARLMAQGLE--LPVSINIT 1117

Query: 802  SKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
             + L      + M   +++        + +  +ES  + + +     L RLR +G+ ++ 
Sbjct: 1118 PEHLHRRGFADWMALRLAQHPAVPARLLAIELTESAALYDIDHVARELTRLRALGMQISF 1177

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S L+YL  +P D +K + S + G        AI++ +I +A +    I+A+ +
Sbjct: 1178 DDFGTGYSSLAYLRRLPMDHLKLDRSFVAGMLGDAGDRAIVQGVIGLAHSFGCGIVAEGV 1237

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                    L +MGC + Q   +A P+     +  
Sbjct: 1238 ETVEQGLALLQMGCHHAQGYCIAMPMPVEQFMDW 1271



 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 93/333 (27%), Gaps = 26/333 (7%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276
           + +       ++ G  ++    L +        + +       +   +L           
Sbjct: 10  VFLSGIVHLLLIAGATALPQSVLLQ--PSRGVRIALGLVAGAASTLVALQGMPLDAPGVA 67

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
             H  +          +                      A I L    +++        R
Sbjct: 68  YIHPPIIVSAAFLFGPLCGGVAAVAALASGWLDAPAHWGAMISLSAACWVMGCLAWLLGR 127

Query: 337 AVLLIPAWILIFIWFIG---------LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           A  L    +++ +  +             A+  +  +   Q         +V L G   +
Sbjct: 128 ATRLTAISLVVALTVLVPPALLPWTETASALAAQEGSAPWQGIPWRYAFGVVALCGAVEL 187

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG---- 443
               A     Q +    +     +  SG   W+WD+   R T         GLA+     
Sbjct: 188 LRARARSL--QTLGQHEDELLRVLKASGGGRWEWDLRNSRFTYHGRFYRAFGLANSPDDE 245

Query: 444 --------SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
                    +    + W    H +DR+     L             E R+R  +  + W+
Sbjct: 246 DFTPLRAFDVRESWQRWNARRHPDDRERLGAYLQRVQDGLEESFHAESRMRDDEGHWRWV 305

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLE 527
           + R   +  +S G +LR  GI  DITE  +  +
Sbjct: 306 VSRGHAVERDSAGRVLRMAGIDLDITEHHEMRD 338



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V   +         + +       A   +   VW+ +  +     +     I GL  G
Sbjct: 448 VFVFHDMTQERRVRDELLAANRLLRQAGWMARLGVWEEEPGKGITYWSDVCFDIHGLDPG 507

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +          ++    R+     L   +  +R     E  +  AD +  W+ +R  P+ 
Sbjct: 508 TPLPR-DYVQQFVAPVWREAMHAALRDCLR-KRTVWSQEIEIVRADGRLVWVRVRGEPII 565

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
             +  ++R  GI  DI E +++ + + 
Sbjct: 566 EGD-RVVRVRGILQDIDEPRRAAQRLR 591



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLASG 443
            ++Q +      +Q + S  ER +         + +        +   P     LG    
Sbjct: 575 GILQDIDEPRRAAQRLRSSEERLARIFQLLPYPLGFSRREDGTYLDVNPAWEQALGYTRQ 634

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G     L           R  L          + YE  +         ++  + P+ 
Sbjct: 635 EAVGRTVVELGIYS----APTRAALLEAATAEGQLVGYELELTTRGGDKRTVLQSMSPI- 689

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
             NG+     G  +DITE+K++ + + 
Sbjct: 690 EVNGEACWLFG-LHDITERKQTEQRVR 715


>gi|251773316|gb|EES53865.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum ferrodiazotrophum]
          Length = 860

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 150/754 (19%), Positives = 299/754 (39%), Gaps = 30/754 (3%)

Query: 226 WVVLGYISIDFGFLSKL--VNLPSGELLIWRACSEIALSSSLIIFL---FMYLHWNRWHA 280
           W +  Y+    G L ++        +  +    S + ++   +      ++Y        
Sbjct: 120 WYLGAYVKYLSGLLPEIRNFLADRPDEFLAAWQSLVKVAMFDMSLALDAYIYADIKDIRI 179

Query: 281 KVGYITFSGIACIAILFCMSF---YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
              Y      +    +  +S          A + +  L+   ++           G +  
Sbjct: 180 LKEYAEKVFSSIPDGILVLSRSLTVLSANRAFLKQFGLSVDAIFGRPLEQVLQASGLKEQ 239

Query: 338 VLLIPAW------ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           +L +         +L+ +   G       R+    ++ A           +   +++ + 
Sbjct: 240 ILEVIGTGDMRHDLLLSVGIAGEETQRPMRITLAGMRLAEEEEEEEEEEAMVLVIVEDLT 299

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                     +   R       +   +   D     V        + G     +      
Sbjct: 300 EEERLRALAEASDRRFRELAETAYSGIVLVDSAMRIVYFNSAAEKMFGCNRTHVLERP-- 357

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L  +       F   L          +   F     D+    M I     S  +G    
Sbjct: 358 -LDILLPEAGTLFPDPLKDGESRIWDSVGQRF-----DHTQFPMEISSSVFSEPSG--SF 409

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  D+TE+K     +L  A  D LTG+PNR   ++RL   + L+  +      ++ +
Sbjct: 410 VTLVLRDLTERKTFENQLLYLANYDALTGLPNRIHLIERLKQAIPLAERNGQ-HLALLFL 468

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG A GD +LV +++R+   ++  D +AR  G+ F  +L          
Sbjct: 469 DLDRFKGVNDSLGHASGDLLLVEVSKRLSNCVRKGDTVARFGGDEFVFLLEGLEEREDAK 528

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P  +   ++ +  SIG ++W     +S  +L+ A+ AMY AK  G ++
Sbjct: 529 PIAEKILGALNAPFEIDNVQVFMNGSIGISTWPHDGESSDLLLRRADAAMYRAKELGNSY 588

Query: 692 VESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      +R   ++ +L  A+E +E  L + P I L     VG EALI+W HP+ G
Sbjct: 589 AFYNPEIGALPERRFSMERELRRALERNEFELFFQPQIDLATGNCVGAEALIRWRHPEKG 648

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ +AE   +I  +  +++      + SWR+   M P+ + +N++ K      L
Sbjct: 649 LILPDQFIPVAESTGLIVPMGAWVIRSACPHLKSWREA-GMAPLRLTVNVSVKQFERGGL 707

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +++ + ++      +++  +ESV+M +P  +   L  L ++GI +++DDFGT  S L
Sbjct: 708 IQTLESSMRESGVDSRLLEIEVTESVLMQHP-MASDTLRELSRMGILISIDDFGTGYSSL 766

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +T        +AI  +I+ M   +    IA+ +     +  L 
Sbjct: 767 SYLKKLPVYKLKIDRSFVTTLPVDPDMLAITTAIVTMGSALRLKTIAEGVESREQLDILR 826

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           R+GCD IQ  + + PL  ++ +  ++E+    + 
Sbjct: 827 RLGCDEIQGYYYSRPLPNDTFMTWVREKSTPPRT 860


>gi|167622419|ref|YP_001672713.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella halifaxensis HAW-EB4]
 gi|167352441|gb|ABZ75054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella halifaxensis HAW-EB4]
          Length = 1487

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/562 (24%), Positives = 272/562 (48%), Gaps = 13/562 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +  D    + A   + + V  +D       T      ++GL S  + G    +   +
Sbjct: 924  QRKLKDDVYLLAQAFENTSEAVLIFDSAERVQVTNKAAKNMMGLDSKRLIG--LQFSQVL 981

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               ++    + + + +         E  + A D+    + + +  + N+NGD   Y+ + 
Sbjct: 982  QGGEK---NSSIVNLLDQ-GLSWAGECFINAEDSLRCAVWLNVSSILNTNGDTTHYVVVF 1037

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE+K++   +   A  D LTG+PNR  F  +L+  +  +  D      ++ +D+D++
Sbjct: 1038 SDITERKRTEADLRRLANYDVLTGLPNRSLFSSKLSQSVYQAERDGG-NLALLFLDLDRF 1096

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G ++GD +LV  + R+  L+    +L R  G+ F I+L +  +   I     A
Sbjct: 1097 KHVNDSYGHSMGDALLVEASNRLQALISDEHVLCRFGGDEFVILLRNNPDIDVINHLCDA 1156

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  SI +P  L  RE  ++ SIG + W         ++KNA+LAMYHAK  G  + + + 
Sbjct: 1157 LLASIELPFELYGREFYISTSIGVSLWPEDAKQPESLIKNADLAMYHAKEEGKGNFKYYS 1216

Query: 697  VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNIS 753
                      + ++ +L  A+E +EL L + P I +  ++++VG+EAL++W+HPK G + 
Sbjct: 1217 EERNAEALYHLRLEAELRKAIERNELELHFQPQIDILQNDKLVGVEALLRWNHPKEGLVR 1276

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +  F+ +AE   +I  I+ +++         W       P+ + +NI++      +  +G
Sbjct: 1277 TDIFIKVAEACGLIVEIDRWVMREACIYGARWAALLP-EPLKVSVNISALHFRQPDFIKG 1335

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +Q + ++T    + +    +E V+M   + ++  +  L+ +G+++ +DDFGT  S L+YL
Sbjct: 1336 VQQVFAETSMPNTALSFEITEGVLMKELKVAKQHIQELKSLGVNVAIDDFGTGYSSLAYL 1395

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +   +T+K + S +          AI  SII +A+N++  ++A+ +     ++++   G
Sbjct: 1396 RHFEVNTLKIDRSFLIDIATNKADQAIASSIIELARNLKLDVVAEGVETHEQLEQVFSRG 1455

Query: 932  CDYIQDSHVASPLGFNSILKLL 953
            C  IQ  + A P+    I   +
Sbjct: 1456 CYVIQGYYFAKPMPAAEIESYM 1477



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             + V A    +  +     R   A+ GS    W+W +  + +    +IA +   + G  
Sbjct: 789 RQRQVKAFREINLALTDSENRLKQALKGSNSERWEWQLGSN-LFCLENIAGLF--SDGEP 845

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              ++     IH +D           +  R  R + E+R   ADN + W+ +  RP+  +
Sbjct: 846 QVYLKLEQFPIHRDDASEVMAAWQDMLLERTDRFEVEYRYCRADNTWGWVRVMGRPVERN 905

Query: 506 N--GDILRYIGIANDITEQKKSLEGILCNA 533
           +  G I R  GI +DI+EQ+K  + +   A
Sbjct: 906 HLTGVIERVAGIYSDISEQRKLKDDVYLLA 935


>gi|238799082|ref|ZP_04642539.1| Sensory box-containing diguanylate cyclase [Yersinia mollaretii
           ATCC 43969]
 gi|238717062|gb|EEQ08921.1| Sensory box-containing diguanylate cyclase [Yersinia mollaretii
           ATCC 43969]
          Length = 853

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/580 (23%), Positives = 267/580 (46%), Gaps = 17/580 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    +            + +  ER       + D +W+ D        +    TI GL
Sbjct: 282 LVLRRAMSEAQIADENRTALIASEERFRHVAEAATDWLWETDANLRITYLSQRFLTITGL 341

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTIL-DSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +     G   + L      D    R  L  + +   R  LQ  +   +A  +     I  
Sbjct: 342 SVEHWLGRNLDSLLNC---DIMPLRAWLQHTHLTESRNELQCTY--FSAQGEKRICRIYA 396

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +P+   N + + + G A+DIT + ++ E I   +  D LTG+PNR    + L + L   A
Sbjct: 397 KPII-KNDETIGFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLESKLRNLA 455

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +    ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +
Sbjct: 456 AAPHP-LVILNVDLDKFKPVNDTFGHVAGDMVLHQVSERLRSCLRDQDLVARQGGDEFIL 514

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I+   ++  +I      +   I  P  +  ++I + ASIG A      + + E+L+ A++
Sbjct: 515 IITGLSSIKEIEQLCARVIARIESPYVINGQDIYIGASIGIALAPQDSMQAEELLRFADI 574

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK+ G N    +             ++  L  AV+++E  L Y P  R+   ++ G
Sbjct: 575 AMYEAKNSGRNRWSFYSSEMNDRLMQRSELERFLRQAVKHNEFSLYYQPRYRIEGTQLTG 634

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP  G +   +F+ +AEE  +I +I+ + + +  +D  +W        + + 
Sbjct: 635 AEALVRWNHPVLGLLMPDQFIALAEETGLITSISDWTMLQACQDASTWHSS-----LIVS 689

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI++ +     L E ++ ++  T     R++L  +E +++ + + +   +  L+ +G+ 
Sbjct: 690 VNISAIEFRSQRLIERVRQVLLLTGLPSHRLELEITERIMIEDADGAFKTMTALKALGVR 749

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ A
Sbjct: 750 LSMDDFGTGYSSLNYLRRFPFDGLKIDKSFIDELAESHEGQSIVEGIINLGHALSMTVTA 809

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  E  +  L  + CD +Q   +  P+    +  L++ 
Sbjct: 810 EGVETETQLGYLQTLMCDEVQGYLLGKPMKLYDLSVLIRN 849


>gi|104779686|ref|YP_606184.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95108673|emb|CAK13367.1| putative sensory box proten ; GGDEF domain/EAL domain protein
            [Pseudomonas entomophila L48]
          Length = 1247

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 146/574 (25%), Positives = 266/574 (46%), Gaps = 12/574 (2%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSM 445
            +  +         +    +  +     + + V   D  +         + I G +   ++
Sbjct: 664  MLTIARDITERHLMQEKLQLAATVFENTAEGVLITDTDQRISAVNRAFSEITGYSEIEAL 723

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                R      H  D   +  +         G  Q E   +  + + +   + I  + NS
Sbjct: 724  GQTPRLLASGQH--DSAFYAAMWHQLTAE--GHWQGEIYNKRKNGELYPGWLTISAVRNS 779

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              +   ++ +  DI+  K +   +   A  D LTG+PNR  F +RL + L  +   +  +
Sbjct: 780  ERETTHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLLSALTCAQVSNR-Q 838

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I+L   +
Sbjct: 839  GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLH 898

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                 +  A  +      P    E E   +ASIG + +       + +++NA+ AMY +K
Sbjct: 899  KPSDASAIANKLLACFHAPFQAGEHEFFTSASIGISLYPQDGSDVATLIRNADAAMYRSK 958

Query: 686  HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G N VE++     +  S+R+ ++ +L  A+E +EL L Y P   L  + +VG EALI+
Sbjct: 959  AKGRNRVETYTRDLTAQASERIALEHELRRAIERNELSLYYQPKFSLKTQSLVGAEALIR 1018

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP +G +   +F+ +AEE   I  +  ++LE+  R +  W+         + IN+A  
Sbjct: 1019 WTHPTFGEVPPEQFIHLAEENGTILQLGDWVLEQACRQMHVWKKAYQAFG-PLSINLAGA 1077

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L    L + ++ L+         ++L  +E+ +M   E +  +L +L+++G+ L +DDF
Sbjct: 1078 QLRQPSLAKRIEQLLKSYQLKAGDLQLEITENFIMSQAEEALSVLHQLKQLGVQLAIDDF 1137

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA+ +  +
Sbjct: 1138 GTGYSSLSYLKRLPLDILKIDQSFIRGLPDDPHDAAIARAIIALGRSMQLTIIAEGVENQ 1197

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
               + L   GC+ IQ   V+ PL         L+
Sbjct: 1198 AQQRFLAAEGCEQIQGYIVSLPLPPEEFAATFLR 1231



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVL-----ATGYFSQGIFSDGERQSLAVLGSGDIV 418
           +D++   L G L+L+ IL     I   L           Q + S        V     I 
Sbjct: 265 HDMLLYGLPGVLLLVAILAVVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIA 324

Query: 419 WDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           W+ D         +P    +LG   G        W   +H  D    +   DS     R 
Sbjct: 325 WEADANDFTYSYVSPHAEDLLGYPLGEWL-QPGFWRSILHPEDALWAQAYCDSETAAGRD 383

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               ++RV  AD    W+   +  +   +G      G+  DI+E K + +
Sbjct: 384 H-SLDYRVIRADGHSLWVRNIVSMI--EHGHKPLMRGLMIDISETKHTED 430



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLAS 442
              ++ +       Q +    E+ + A   S D +         +         + G   
Sbjct: 540 VVAVRDINQLKETQQQLQISEEKFAKAFHASPDGLLLSRQEDGLLLEVNEGFCRLTGYDI 599

Query: 443 GSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEF--RVRAADNQFHWMIIRI 499
            +        L   + +N+R      L+      R     +F   +R +D Q     +  
Sbjct: 600 STTVDQTSLDLGIWVDLNERQRLVEQLN------RDGFVRDFSCHIRRSDGQIRLCELSA 653

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           RP+    G +   + IA DITE+    E +   A 
Sbjct: 654 RPL--PIGGVDCMLTIARDITERHLMQEKLQLAAT 686


>gi|167624584|ref|YP_001674878.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella halifaxensis HAW-EB4]
 gi|167354606|gb|ABZ77219.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella halifaxensis HAW-EB4]
          Length = 1428

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 133/561 (23%), Positives = 268/561 (47%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        ++ L+     G + N+   ++ 
Sbjct: 865  QAEEQLRLFERAIQNISEGMFILDNNFKFVEVNEACCDLVMLSKKEFIGRLFNF--DLYP 922

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   ++   + + +  + GR   E      +     M + I  + +  G++  Y+G+ +D
Sbjct: 923  D---SYSEQIRAILKQQ-GRWNNEVESTRGNGASFLMELSIDAIYDEQGELSHYVGVFSD 978

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            ++ +K+  E +      D LT +PNR + +  L  ++       +   T+MV+D+D +KK
Sbjct: 979  VSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1033

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++LV ++ RI   +     + RL G+ F I++    +    A  A  + 
Sbjct: 1034 INDSLGHQVGDELLVQVSERIQVAVPSHTSIYRLGGDEFAILVDKNPDIGTSAIIAKNVI 1093

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  MP  L + ++ V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1094 HAFEMPFELTKEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1153

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              ++    ++ +  +   ++++   + Y P + L    + G+EAL++ +HP+ G I  ++
Sbjct: 1154 LNKNAIRQLEVENLIREGLKDNLFEVYYQPKVDLKSGRMAGMEALVRLNHPEHGLIPPNK 1213

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L++       WR Q       + +N++SK     +L + +++
Sbjct: 1214 FIPLAEENGLIVEIGDVVLKKACFAAQKWRSQGLFNG-RVAVNLSSKQFALPDLQQRIES 1272

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1273 ILQLTQLPATNLELEITEGTVIKEPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1332

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1333 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEEASQLSILRALKCEE 1392

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +      KLL++
Sbjct: 1393 IQGYIFSKAVTETEFTKLLQK 1413



 Score =  123 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L  + I   VI+ +L      Q I    ER  L++ GSGD +WDWDI   ++  +    +
Sbjct: 718 LCSLFISILVIKTILRRREIQQQIAKSEERLKLSLWGSGDEMWDWDIETGQIYRSNIWGS 777

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L           +     IH  D++  R  L+          +  +RV+  +N++ W++
Sbjct: 778 -LEFPQDGQRSGSQGEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKNNEWVWIL 836

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            R + +  + N + +R  G   +I+  K++ E + 
Sbjct: 837 DRAKIVERDENDNAVRMTGTIKNISNFKQAEEQLR 871


>gi|307295045|ref|ZP_07574887.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879519|gb|EFN10737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 868

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 157/677 (23%), Positives = 297/677 (43%), Gaps = 27/677 (3%)

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
            +    +L     +  M+  S+A  +   +       ++   + G  R        + + 
Sbjct: 106 WLMLPMVLLSGLSFSLMLGTSLAADSQNVLAAEMAVALMAVSICGDRR-------LLGVS 158

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF-SDGERQ 407
            +   L  +I    D   I  ++    V++V  +         A  +  + +     +R 
Sbjct: 159 YFCGLLIASILHGGDFAQIGLSISCIAVMLVATLRQANADMDRAIAFHQRDLRAQRSDRL 218

Query: 408 SLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-- 464
                 SG    W+ D     V  +  +   L L   S+ G        +   DR +   
Sbjct: 219 LQEYEQSGRGWFWETDRHGCIVYISDTLVRTLDLRGESLIGRPIT--QIVRPGDRQDGDG 276

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L   +  R G  +   R   A ++  W  I  +P+ N  G    + G   D+TE ++
Sbjct: 277 ERTLGFHLSVRTGFSEIAVRAAMAKDE-RWWSISGQPVFNEFGQFQGFRGSGTDLTEMRR 335

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           S   +   A  D+LTG+ NR   +  L   +           T+M++D+D++K +ND LG
Sbjct: 336 SQAEVTRLAQYDSLTGLANRVQMMRSLEQAVA-GKRGQPRDCTLMMLDLDRFKIVNDTLG 394

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L  ++ RI  ++    ++ R  G+ F I+L    + + +   A A+   ++ P
Sbjct: 395 HPAGDALLRQVSERIQRVVGDKGLVGRQGGDEFKILLPGRPDKIMLDHLARAIITDVSQP 454

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
             +    + +  SIG +      +T+ E+++NA+LA+Y AK  G      +         
Sbjct: 455 YLVEGTAVVIGVSIGISFCPQDGVTAEELIRNADLALYAAKGGGRGVYRFYSPEMHADAE 514

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           DR  ++EDL  A+  + L+LVY P++    E+I G EAL++W HP  G IS + F+ IAE
Sbjct: 515 DRRQLEEDLRKALVENRLHLVYQPVVSSKTEQITGYEALLRWQHPARGAISPTLFIPIAE 574

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++L    R+   W +      + + +N++     ++ L   +   ++ + 
Sbjct: 575 ESGLIGPIGEWVLRTACREAAQWAE-----DVRVAVNVSPIQFANHSLPSIVMNALAASG 629

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P R++L  +ESV + + + +  +  RL+ IG+ L LDDFGT  S L YL   PFD +K
Sbjct: 630 LAPHRLELEITESVFLNDDDGTDTMFARLKGIGVRLALDDFGTGYSSLGYLKKAPFDKIK 689

Query: 883 FNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            + S + G+  K     AI+++I+ +A+ +     A+    + ++  +  +GC +IQ   
Sbjct: 690 IDQSFVRGAAIKGSPNSAIIKAIVSLAEALGMDTTAEGAETQDELALIRNLGCSHIQGFV 749

Query: 940 VASPLGFNSILKLLKER 956
              P+    +  L+++ 
Sbjct: 750 YGRPMLPADV--LIQQH 764


>gi|206978155|ref|ZP_03239037.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|222094380|ref|YP_002528439.1| sensory box, ggdef family protein [Bacillus cereus Q1]
 gi|206743627|gb|EDZ55052.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|221238437|gb|ACM11147.1| sensory box, GGDEF family protein [Bacillus cereus Q1]
          Length = 567

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L + +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 LSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|330939046|gb|EGH42502.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 748

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/702 (22%), Positives = 297/702 (42%), Gaps = 60/702 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V                   +IY  ++G+              +  + 
Sbjct: 61  AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL                         +  + +  ER  L    
Sbjct: 111 LRNSDQAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L           
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523
             ++   + + R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K 
Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281

Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                                     +  E +   AF D LT + NR   ++ LTT  ++
Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                  R TV+ +D+D +K +ND +G   GD +L ++  R+   ++  D+LAR+ G+ F
Sbjct: 342 RDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEF 400

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L+ ++        A  +   +   I +  ++I ++ SIG  +   S     E+L++A
Sbjct: 401 AILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRDA 460

Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK +G      F  S      D ++I+  L  A+E+ +  + Y PI     E +
Sbjct: 461 DVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGTCEHL 520

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR + +   + 
Sbjct: 521 VGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDLR 580

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ K+L      + +  +I+ T     ++++  +ESV +  P+    +L ++R++G
Sbjct: 581 LNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQLG 640

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           + + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + +   I
Sbjct: 641 VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLDI 700

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 701 TAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|289209031|ref|YP_003461097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
 gi|288944662|gb|ADC72361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
          Length = 1092

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 133/557 (23%), Positives = 248/557 (44%), Gaps = 15/557 (2%)

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
            S+    + + V   D     ++       ++G     + G   + +    H      F  
Sbjct: 535  SVVFENTREGVVITDATAHILSVNRAFTELMGYTQDEVVGRTPKMFQSGRHDQ---AFYA 591

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             +   +    G  Q E   R    +    +  I  + +  G +  Y+ +  DI+  K S 
Sbjct: 592  NMRRQLETE-GHWQGEIWNRRKTGEIFPELQSITAVRDDQGRLTHYVSVFADISRLKASE 650

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
              +   A  D LT +PNR+    RL   + L    + L   +++ID+D++K IND  G A
Sbjct: 651  AELDFLAHHDPLTELPNRRLLRARLAQAIALMRRRNGL-LAILIIDVDRFKDINDSRGHA 709

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GD +L  +  R+    +  D +ARL+ + F ++  +  +    A  A  + + +  P++
Sbjct: 710  AGDRLLKIVADRLQAGQRGTDTVARLASDEFAVLADNLAHVDDAALVAEDILREVGRPVD 769

Query: 647  L-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            L    E  + A+IG A +      +  +L+ A  A+  AK  G      +  +      +
Sbjct: 770  LGDGVEFEIAATIGIAVFPDHGADAETLLQQAGTALSRAKEDGRGGYRYYSDAFTEAARE 829

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R+ +   L  A+E   L + Y P  R+ D  ++G EAL++W  P+ G +S   F+ +AE+
Sbjct: 830  RIDLNARLRRAIEQDSLEVHYQPQYRVSDGVLIGAEALLRWTDPELGPVSPGRFIPVAEQ 889

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  +  ++L R+     +WRD    P + + +N+++       +   +  L+    Y
Sbjct: 890  TGLIVELGDWVLRRVLAQGQAWRDA-GYPAVRLAVNVSALQFQRVAIDHQVADLLEGHGY 948

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                ++L  +ES +M +PER+R +L RLR+ G+S  +DDFGT  S ++ L   P DT+K 
Sbjct: 949  PAKYLELEITESALMSDPERARRILQRLRERGVSFAVDDFGTGYSSMAQLKRFPVDTLKV 1008

Query: 884  NGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            + S + G           +I R+I+ +   +  +++A+ +     +  L  +GCD+ Q  
Sbjct: 1009 DKSFVDGLAAGAHDADDRSIARAIVALGHGLGLSVLAEGVETREQLGALRELGCDHYQGY 1068

Query: 939  HVASPLGFNSILKLLKE 955
              + PL       LL E
Sbjct: 1069 LASRPLPAEHFAALLAE 1085



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 5/184 (2%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           L  P W LI    +       ++    +    L   L+++         Q +        
Sbjct: 342 LSAPGWDLILKRNVASLAIAPRQQALWMGAATLFVWLIMLAAGGLLWRQQWLRQHLVLMH 401

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIH 457
                     L        +              P +A +LG +   +     +W     
Sbjct: 402 SHAEQDRLLRLYFDMPFLGMAISYPGGRGWERVNPFLAQMLGYSPEELVRT--DWDRLAV 459

Query: 458 INDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             DR      LD+ +    R     E R+   D +     I ++    ++G I R +   
Sbjct: 460 PEDRS-CEAPLDAAMQAGERDGYSIEKRLLRRDGRVLVADIDVKCTRTADGAIDRVVATI 518

Query: 517 NDIT 520
            DIT
Sbjct: 519 EDIT 522


>gi|297539269|ref|YP_003675038.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297258616|gb|ADI30461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 846

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 163/794 (20%), Positives = 311/794 (39%), Gaps = 37/794 (4%)

Query: 195 IIGVASLLAIFLTI--FYMVNRSSMLIPTFAMAWVVL---GYISIDFGFLSKLVNLPSGE 249
           +  +   + +F      Y V R S LI        V        + F  +   +     E
Sbjct: 51  MFSIMVAMFVFGVTWNSYKVERDSNLIILACGLLSVGLIDFLHLLSFTGMPDFITPSGPE 110

Query: 250 LLIWRAC-SEIALSSSLIIFLFM-YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             I     + +  + +L+      +  + +  +   +I  S        +   ++  +  
Sbjct: 111 KTINFWLVARLIAAITLLTVAVNPWQPFQKKSSPYIFIGISLSVTFLTAWLGIYHQDLWP 170

Query: 308 ASIARITLASIVLYYT-----------YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
            +    +  +     +            F+ Y   +  +     I +        I   +
Sbjct: 171 RTFVEGSGLTAFKIGSEYIISGLLSIAAFLFYKSTRQEKMPRYDIYSLFGASCVTILSEL 230

Query: 357 AITKRLDNDIIQPALV-----GGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQSLA 410
           +         I   L         +LI  ++  + ++    +   F + +          
Sbjct: 231 SFVNFHSFTDIFQLLGHLYKISAYLLIYRVVFISSVRAPFESLEAFKEKLLVSESMLQSV 290

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILD 469
           +      V+  D     +         +GL+    + G     L        + +     
Sbjct: 291 IDNVPVRVFWKDRELRFLGANKLFLKDVGLSHINEIVGKKSEDLFT---EYNELYSQDDY 347

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + +     +L YE   +  + +  W+     P+ +++  ++  +    DITE+KK+ + I
Sbjct: 348 TVIRTGNSKLNYEVPFKKVNGESGWLQTSKVPLKDTDTCVIGILVTFTDITERKKAEQTI 407

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR+ F  RL   +  +  +   +  + ++DID +K++ND LG + GD
Sbjct: 408 EFQANYDALTQLPNRRYFNIRLEHEVKSAVLNGK-KFALALLDIDNFKEVNDTLGHSAGD 466

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L  + +R+   ++  D ++RL G+ F II+ +  ++      A  + K+++ P  L E
Sbjct: 467 ELLKQVAQRLINSVRDIDTVSRLGGDEFTIIISNLKDNNTAEVVAQKLLKALSEPFKLEE 526

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
            +I +T SIG   +      S +MLKN++ AMY AK +G N    F         +R+ +
Sbjct: 527 NKIFLTVSIGLTIYPDDTNLSEDMLKNSDQAMYQAKLQGRNRHSYFTSDMQVAAQNRLQL 586

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L +A+E  +  LVY PI+ L    I   EALI+W HPK G IS  EF+ IAE   +I
Sbjct: 587 TNELRVAIEEKQFSLVYQPIVELSTGFIHKAEALIRWQHPKRGAISPIEFIPIAEITGLI 646

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN--ELCEGMQALISKTLYSP 825
             I  ++       +  WR+        I IN +            E     + +     
Sbjct: 647 VEIGDWVFYEACNQVKCWRNILAH-NFQISINKSPVQFTHKRQGFKEWF-DFLRELDLPG 704

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E +V+      + LL +  +  I ++LDDFGT  S L+YL     D +K + 
Sbjct: 705 ESIVIEITEGLVLNADASIKNLLMKYSEANIGISLDDFGTGYSSLTYLKKYDIDYIKIDR 764

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S ++  +   + + +  ++I MA  +   +IA+ I  E  ++ L   GCDY Q    + P
Sbjct: 765 SFISNISSGSEDLTLCETMIEMAHKLGIKVIAEGIETEEQLELLISAGCDYGQGYWFSKP 824

Query: 944 LGFNSILKLLKERF 957
           L          +R 
Sbjct: 825 LAPKEFENYFMKRN 838


>gi|296156558|ref|ZP_06839396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. Ch1-1]
 gi|295893157|gb|EFG72937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. Ch1-1]
          Length = 1059

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 148/557 (26%), Positives = 266/557 (47%), Gaps = 13/557 (2%)

Query: 404  GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             +R  L       S + +   D  R  VT         G  + ++ G    +L     +D
Sbjct: 501  EQRLELWGKVFEASSEAILILDAQRRLVTANASFYRATGYRADNVTGKEPAFLFGTQEHD 560

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             D    ++DS    R      E  VR      +   + +  + +   ++  YI    DIT
Sbjct: 561  -DILPAVIDSV--DRLSVWHGEAHVRRRAGSDYPAWLMVSAVRDRRANLSHYICTLIDIT 617

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++KKS   I   A  D LT +PNR+ F+ RL  +L  +      R  V+ ID+D++K IN
Sbjct: 618  DRKKSEARIQFLAEHDVLTELPNRELFVKRLGVVLGNARRTGQ-RVAVLFIDLDRFKNIN 676

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMRK 639
            D LG  +GD +L S++RR+ + ++  D ++RL G+ F +IL S +N+  +       +  
Sbjct: 677  DSLGHHIGDSLLRSVSRRLLQAVRTNDTVSRLGGDEFTVILNSVSNAADVTRTIEERLLP 736

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +  P  +    + V+ S+G A +         +++NA+ AMY AK  G N V+ F    
Sbjct: 737  LVRQPHEVGGVTLQVSCSVGVALFPDDGEDIETLMQNADAAMYQAKGAGRNLVKFFAPDI 796

Query: 700  --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ ++  L  A+   E  L Y P +     E+V +E L++W+ P+ G +S ++F
Sbjct: 797  AERTRYRLTLEACLRSAIAMHEFRLEYQPCVDAHTGELVAVEGLLRWNSPQIGIVSPAQF 856

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE+  +I  I  +++    + I +W D   M P+ + IN+++  L D +L   +   
Sbjct: 857  IPVAEDTRLIIPIGAWVINEACQQIAAW-DAEGMTPLRVSINLSAIQLRDPDLIGTLADS 915

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +++   +P R++L  +E+V+M N E    ++  +R +G+ L+LDDFG   S LSYL   P
Sbjct: 916  LARHGVAPWRLELEITETVLMDNAENYLTMINAIRALGVKLSLDDFGIGYSSLSYLNRFP 975

Query: 878  FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + + +    + R   AI+R+II +   +   ++A+ +  E   + L  +GCD +
Sbjct: 976  LDRLKIDRAFVLDMLDARADLAIVRAIIELGHELGLRVVAEGVESEHQARILRTIGCDEL 1035

Query: 936  QDSHVASPLGFNSILKL 952
            Q    +  L    +   
Sbjct: 1036 QGFLFSKALSPADLWSW 1052


>gi|229137427|ref|ZP_04266038.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
 gi|228645985|gb|EEL02208.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
          Length = 569

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 257/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L + +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTNNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+V+ + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPANRLILEITESIVVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|157962824|ref|YP_001502858.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella pealeana ATCC 700345]
 gi|157847824|gb|ABV88323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella pealeana ATCC 700345]
          Length = 1064

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 149/556 (26%), Positives = 249/556 (44%), Gaps = 13/556 (2%)

Query: 404  GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             E   LA      S + +   D     +        I G     +       L     N+
Sbjct: 452  EESLKLAASVYNNSREAMSVQDDKGLIININAAFTDITGYTESEVKNQNIKILQ-CSRNN 510

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            R  +  +  +      GR Q E  +R  + +   + + +  + ++     R++ + +DIT
Sbjct: 511  RSAYEQMHMAVEEE--GRWQGEVWLRRKNGEEFVVWLTLNALFDAEAQTQRHVALFSDIT 568

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K++ + I   A  D LTG+PNR+  LD L   +  S + +     +M +D+D +K++N
Sbjct: 569  EKKQAEKIIWKQANYDTLTGLPNRRMLLDYLNAEILKSDSREQ-HFALMFLDLDYFKEVN 627

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG  +GD +L    +R+   ++  D++ARL G+ F I+L    +   +   A  +   
Sbjct: 628  DTLGHDMGDMLLSEAAKRLKACIRDSDVVARLGGDEFTIVLSGVTDIKGVDKVAKHILTR 687

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            IA P NL E    ++ASIG   +     T   +LK+A+ AMY AK  G N    F  S  
Sbjct: 688  IAEPYNLGEETAYISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYFTPSMQ 747

Query: 701  RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            R    R+ + +DL  A+ + E  L Y PI+ L     +  EALI+W HPK G +S  EF+
Sbjct: 748  RYAKYRMRLIQDLRSAIADHEFELYYQPIVSLQGGLGLKAEALIRWRHPKRGLVSPIEFI 807

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQAL 817
             +AEE  +I  I  ++ ++ AR    WRD+  +  + I IN +     D  E       L
Sbjct: 808  AVAEETGLIIEIGNWVFQQAARQSALWRDRFGIE-VQISINKSPVQFRDEGESINSWVNL 866

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +     + + I +  +E +++         L + R  GI ++LDDFGT  S L+YL    
Sbjct: 867  LKTLNLTNNNICIEITEGLLLDGNSAISSKLTQYRDSGIQISLDDFGTGYSSLAYLKKFD 926

Query: 878  FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + S             +  +II MA  +   +IA+ +  +   K L   GCD+ 
Sbjct: 927  IDFLKIDQSFTRNLDSNSDDFTLCEAIIVMAHKLGMKVIAEGVETDYQRKILANAGCDFG 986

Query: 936  QDSHVASPLGFNSILK 951
            Q    + P+      +
Sbjct: 987  QGYLFSRPVPVEKFEQ 1002



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 1/153 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  T   +  +     +   +  E+  L +  S    WDWDI  D +      A +LG  
Sbjct: 307 LIITGFLNRTSQKEAEKEKLASQEQLGLVLGSSELGFWDWDIRNDIIERNEHCAALLGCD 366

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +++   + W   IH  DR      + + +     + + E+R+R   ++  W++   + 
Sbjct: 367 IDTLNRQQKLWGDSIHPEDRVRVLRSIKAHLSGETEQHKVEYRIRTLASETLWILDSGKV 426

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           M  + +G  LR  GI  DIT++K+  E +   A
Sbjct: 427 MSRDESGCPLRMCGIHTDITDRKRVEESLKLAA 459



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/340 (11%), Positives = 98/340 (28%), Gaps = 30/340 (8%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPS-------GELLIWRACSEIALSSSLIIFLFM--- 271
             ++ +    + +    +                 + I    + I +S  L+ +      
Sbjct: 5   LILSLIQNAALLLAIVLVYDAFPRNHKRSLDLLWRVGIGVLVAIITISVMLMPWQHSNGV 64

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG- 330
           ++        V  + F G+  +  +     Y   ++     +      +  +  + Y   
Sbjct: 65  FIDSRTVILSVCGLFFGGVPTLVAVILSCLY--RLSEGGIAVWSGIGTIVSSGLMGYLWG 122

Query: 331 ---------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
                    ++  E     +    +  +W + +   I   L   I  P L    +  V+L
Sbjct: 123 KYRKGDIGDIRISELFAFGLMTHSVALLWGLTMPTEIAINLLKQITVPLLAIFPITTVLL 182

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
               ++   +      +    D              +   DI  + +   P +  +L   
Sbjct: 183 --GILLSRRIEIERDQKIKLQDHLLFKSHFHSGNMGIAITDIAHEWIKVNPSLCQMLKYT 240

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +WL  +  +D   ++  L   +  R    + +  + A D    +  + +  
Sbjct: 241 EQELL--SLSWLDLMSADDFQLYKHHLLRMLDGRINEFELDLCLIAKDETIVYTHMTVAC 298

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
                  +   I    + T QK++       A Q+ L G+
Sbjct: 299 QR-VQSRVELIITGFLNRTSQKEA--EKEKLASQEQL-GL 334


>gi|300696801|ref|YP_003747462.1| signal transduction eal-ggdef domains transmembrane protein
            [Ralstonia solanacearum CFBP2957]
 gi|299073525|emb|CBJ53045.1| putative signal transduction eal-ggdef domains transmembrane protein
            [Ralstonia solanacearum CFBP2957]
          Length = 1178

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/584 (24%), Positives = 260/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D        V   P    +
Sbjct: 604  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 659

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  RT L          ++   R    D      
Sbjct: 660  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 714

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 715  NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 774

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 775  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 834  VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 888

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY+AK  G N +E F        S R+ ++  +  A+E+ +  L+Y P I     
Sbjct: 889  HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 948

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 949  RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1008

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL  +++  LL+ 
Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +  +A     + +    ER       + D ++DWDI        
Sbjct: 333 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392

Query: 432 PDIATILG----LASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG    L  G   G      +  ++H  D + F   L + +   R    +  RV
Sbjct: 393 ASLHRLLGSDALLTPGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRTAWHHVCRV 452

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  +R +G   DI+++      + 
Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEAELR 497



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  + G+  G        
Sbjct: 488 QRSAMEAELRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTGMPPG-PPPSFAQ 546

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 547 QAQFFTADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNGREEVVA 605

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 606 LFGTMQDITERRESDEQLRLL 626


>gi|307729172|ref|YP_003906396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1003]
 gi|307583707|gb|ADN57105.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1003]
          Length = 767

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/617 (22%), Positives = 270/617 (43%), Gaps = 19/617 (3%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             +    A+  R             L  I   +G  V Q+ +A     Q +    E   L
Sbjct: 152 GAVLGAFAVYHREPRRPTAQEET-MLRDIGRSVGLAVHQNAMA-----QRLAHSEEHHRL 205

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTIL 468
            V    + +         +   P    +L      +   IR   +   H N         
Sbjct: 206 VVDHLIEGIVVQSRAGVVLACNPSAQRMLRTGPQIVGRSIRTVMVRSFHENGSPVAEEER 265

Query: 469 --DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKS 525
             +  +   +  L     +   + +  W+   + P+           +    DI   +++
Sbjct: 266 PTNQVLATGKPMLDVTLALELVNGEVIWVTENVVPILKPGQSKPDSVLISFTDIGPVREA 325

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN---LRPTVMVIDIDKYKKINDV 582
              +   A +D+LTG+ NR    +R+ ++      + +   +   V+ +D+D +KK+ND 
Sbjct: 326 QRQLKFLATRDSLTGLYNRAYLTERMHSLFAPGGPNGSGEVVSVAVLFVDLDGFKKVNDT 385

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD +L S+  R+   ++  D LAR+ G+ F I++ + + + ++   A  +  +IA
Sbjct: 386 AGHEAGDALLRSVAERLAGCVRHDDTLARVGGDEFVIVVSACDCNDQLVALARRILDAIA 445

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +P  + E E  + ASIG + +      +  +++NA+ AMYHAK RG N+ + F     + 
Sbjct: 446 VPFAVAENEYYLGASIGISRYPEDGQDAPTLMRNADSAMYHAKQRGRNNFQFFTAELNQQ 505

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +    I++ L  A+  +EL LVY PI+       +G EAL++W + + GN+S +EF+ +
Sbjct: 506 LQRRFVIEQLLRRALAANELSLVYQPIVDSHGGRTIGAEALLRWYNSELGNVSPAEFIPV 565

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  I  ++L         WR     P + + +N++ +   D  L E ++  + +
Sbjct: 566 AEDAGLIAEIGEWVLAHACEQAAQWRRTLA-PDLIVAVNLSPRQFND-GLVERIRRCLDQ 623

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P+ ++L  +E ++M + +    +L  L   G+ +++DDFGT  S LSYL   P   
Sbjct: 624 SGLEPAALELEITERLLMSDSDTVLPMLQALSATGVRISVDDFGTGYSSLSYLKRFPLHN 683

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S + G       IAI ++++ MA ++   + A+ +        L  + CD  Q  
Sbjct: 684 LKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETPEQAAFLRSIDCDKQQGY 743

Query: 939 HVASPLGFNSILKLLKE 955
             + P+G ++  + L  
Sbjct: 744 LYSRPVGASAYARALAN 760


>gi|189424661|ref|YP_001951838.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189420920|gb|ACD95318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 805

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/743 (20%), Positives = 316/743 (42%), Gaps = 15/743 (2%)

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
           AM   +  Y+ +   FL+  ++LP   +  W    +       + F  + L  + W    
Sbjct: 54  AMLAALFCYVLLAELFLAPDIDLPIFHIEQWSLSLKATAIFFAVAFPLVSLPCSVWRNCR 113

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER---AVL 339
             I    +  +  +     +   V + +    L   +     F     + G      A+ 
Sbjct: 114 LVIYLQVLLDLLFVTAAIHWSGGVVSWLWPAYLLISLESAFLFEKKREVWGIGMIGAALY 173

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGYFSQ 398
            +        +   + M   +     I+   L+   V  +  ++ F     +       Q
Sbjct: 174 GVLLAAEQLDFIATVRMPFMEEESPSILFELLMWLWVAGVNTVVSFFGAFLMDKIRSDHQ 233

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    E  +  +  + D+++        +        ++G       G   +       
Sbjct: 234 KVQQSQEALTGFIATAHDLIFCCRQDGTLLYLNQVGQDMIG--PLEGEGGDISLFNLTDE 291

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +       +     R     +E R+ +    +   + + +    N   D +   G+ +
Sbjct: 292 EGKGLLARQFEKV-TRRIDAGHFEMRLLSPAVGRILDLEVSLSTCCNDVPDQV-IWGVCH 349

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+  +   ++  A  D LTG+PNR    DRL      +    N R  ++ +D+D++K
Sbjct: 350 DITERNLAQRELIKLAHHDVLTGLPNRILLHDRLQQARAFAHRM-NSRFALLFLDMDRFK 408

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG AVGDD+L  + +R+    +  D +AR+ G+ F +++++  +   I      +
Sbjct: 409 IINDTLGHAVGDDLLRMIAQRLKACFRETDTVARIGGDEFVVLMLNVTDRTDICTLNDKL 468

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +A P  +   E+ VT S G  ++   +     M++ A++AMYHAK  G N+++ +  
Sbjct: 469 LQELAQPFMIRGHELFVTTSGGVCTYPDDEDDVEIMMQKADIAMYHAKALGRNNIQFYND 528

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              ++      I   +   ++  E  L Y P + +  + IV  EAL++W HP+ G ++ +
Sbjct: 529 GMDQNSSRRFTIANSMRRGLDRGEFRLYYQPKLDVSSDCIVATEALVRWQHPELGLLAPT 588

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  +I  +  ++L    R  + WR +  M  + + +N++   L  + L E ++
Sbjct: 589 EFIQLAEESGLIVELGEWVLREACRQNMVWRQE-GMRGLRVAVNLSGYQLQHSRLVETVR 647

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T      ++   +ESV+M NP+ +  +L  +  +GI +++DDFGT  S L++L  
Sbjct: 648 KVLDETGMPGELLEFEITESVIMQNPDYAVEVLNEITNLGIHISIDDFGTGYSSLAHLKR 707

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              +T+K + S +          AI  +II M  ++   +IA+ +  E  +  L    CD
Sbjct: 708 FSVNTLKIDKSFVRDVENNTTDAAIASAIIAMGSSLNLKVIAEGVETEQQMDFLRDNNCD 767

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            +Q   ++ PL  +  LK+L+++
Sbjct: 768 QVQGFLISRPLPADQALKVLRQK 790


>gi|330975799|gb|EGH75865.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 748

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/702 (22%), Positives = 297/702 (42%), Gaps = 60/702 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V                   +IY  ++G+              +  + 
Sbjct: 61  AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL                         +  + +  ER  L    
Sbjct: 111 LRNSDQAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L           
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523
             ++   + + R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K 
Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281

Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                                     +  E +   AF D LT + NR   ++ LTT  ++
Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                  R TV+ +D+D +K +ND +G   GD +L ++  R+   ++  D+LAR+ G+ F
Sbjct: 342 RDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEF 400

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L+ ++        A  +   +   I +  ++I ++ SIG  +   S     E+L++A
Sbjct: 401 AILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRDA 460

Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK +G      F  S      D ++I+  L  A+E+ +  + Y PI     E +
Sbjct: 461 DVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGTCEHL 520

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR + +   + 
Sbjct: 521 VGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDLR 580

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ K+L      + +  +I+ T     ++++  +ESV +  P+    +L ++R++G
Sbjct: 581 LNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQLG 640

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           + + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + +   I
Sbjct: 641 VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLDI 700

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 701 TAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|218891972|ref|YP_002440839.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
 gi|254235109|ref|ZP_04928432.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126167040|gb|EAZ52551.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218772198|emb|CAW27977.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
          Length = 864

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/619 (21%), Positives = 259/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   +    +  +  
Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  + +           L   FR   +  Q     +    + N  G    Y G A DIT+
Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+I  F   +   I
Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              +        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 532 NREVAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP+ G I   EF+ 
Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 651

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 707 LARLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL    +  LL+  
Sbjct: 827 FLLSRPLDAQRLRDLLERE 845


>gi|229028422|ref|ZP_04184544.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228732871|gb|EEL83731.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 569

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 256/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQILWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAERRLRVSESRYRELAYHDALTSLPNRLQLITTVNEMIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL +    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALARCSTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPD--YEEGLRLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPPNRLILEVTESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 QSMGCDYVQGFYYARPLSIGELKEKL 565


>gi|15597268|ref|NP_250762.1| hypothetical protein PA2072 [Pseudomonas aeruginosa PAO1]
 gi|9948082|gb|AAG05460.1|AE004634_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 864

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/619 (21%), Positives = 259/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   +    +  +  
Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  + +           L   FR   +  Q     +    + N  G    Y G A DIT+
Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+I  F   +   I
Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              +        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 532 NREVAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP+ G I   EF+ 
Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 651

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 707 LARLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL    +  LL+  
Sbjct: 827 FLLSRPLDAQRLRDLLERE 845


>gi|300856232|ref|YP_003781216.1| putative signal transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300436347|gb|ADK16114.1| predicted signal transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 756

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/550 (25%), Positives = 257/550 (46%), Gaps = 13/550 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472
           + + +   D   + +        + G     + G   R      H  D+  +  +  S  
Sbjct: 212 AMEGILMTDASGNIIKVNDSFQRVSGYKKDDLIGKNPRILKSGRH--DKTFYLNMWHSLS 269

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G  + E   +  + + +   + I  +  S+G +  YI I+ DI++ KK+ + +   
Sbjct: 270 TN--GYWEGEIWNKKKNGKIYPKWMSITSLKGSDGAVENYISISTDISKIKKTEDKLHSL 327

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D LTGIPNR  F +RL   L  +  +      ++ +D+D +K IND LG A GD +L
Sbjct: 328 AYYDLLTGIPNRTLFYERLERSLIRANDNKKA-VALLFMDLDGFKVINDSLGHAAGDLLL 386

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +  RI   ++  D ++RL G+ F +IL + ++   +   +  +   I +P ++L+REI
Sbjct: 387 KEVAARIKSSIRKSDTVSRLGGDEFTVILENVDSHEYVQAVSEVIIDKILLPYSILDREI 446

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           T+  SIG A     + T   +++ A+ AMY AK  G            + ++ +++  + 
Sbjct: 447 TLGVSIGIALAPYDESTVEGLMRKADAAMYDAKESGKGKYSFSSKEIEKRNQEILEMQIR 506

Query: 713 --LAVENSELYLVYHPI--IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
              A+ N E  L   P       + +IVG EALI+W+       +  +F+ ++E   MI 
Sbjct: 507 LNAALHNKEFILYLQPQTAFDGNEFKIVGAEALIRWETADGKIFTPDKFIPVSENNRMII 566

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++LE I +     +       I + IN++SK   +N L   ++ +  +       +
Sbjct: 567 PIGNWILEEIFKIDRILKSSGIN--IKLSINVSSKQFENNNLVSKIKEIFKENSPQNIDL 624

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES +M N E++   L +++++GI +++DDFGT  S LSYL  +P D +K + S +
Sbjct: 625 VIEITESFLMQNTEKAIQNLQKIKELGIGISIDDFGTGFSSLSYLTRLPADYLKIDKSFI 684

Query: 889 TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     I  SII MAK +    +A+ +  +  I  L   GCD +Q  + + PL  +
Sbjct: 685 DDIANINHKNITPSIISMAKTLNLKTVAEGVETQEQINRLIDEGCDELQGYYFSKPLIIS 744

Query: 948 SILKLLKERF 957
             +K +K+  
Sbjct: 745 DFIKYIKQYN 754


>gi|330895802|gb|EGH28091.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 748

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/702 (22%), Positives = 297/702 (42%), Gaps = 60/702 (8%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
           A L  +S Y  +V                   +IY  ++G+              +  + 
Sbjct: 61  AWLRMISSYGDVVLVGQDSPANTMETNSSGSTLIYVAIRGFRHE----------LLGAML 110

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---A 410
           L  +    + +   + AL                         +  + +  ER  L    
Sbjct: 111 LRNSDDAMVLSAAQRYALQAQAA------HIRTYLQPGRDPEANNPLVTSFERLRLLESV 164

Query: 411 VLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           V+ + D +        D+     V   P    I G     + G     L           
Sbjct: 165 VINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRILQC--EETSRAT 222

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523
             ++   + + R  ++ E      D    W+ + I P++N  G    ++ +  DITE+K 
Sbjct: 223 LDVIREALSHWRA-VEVELLNTRKDGSKFWVELSIVPVANEKGWFTHWVSVQRDITERKE 281

Query: 524 --------------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                                     +  E +   AF D LT + NR   ++ LTT  ++
Sbjct: 282 SQQLAQRARLEWEEKLALQSRLEERERISEELTYIAFHDELTSLFNRAYLMNELTTAFEI 341

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                  R TV+ +D+D +K +ND +G   GD +L ++  R+   ++  D+LAR+ G+ F
Sbjct: 342 RDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDKLLKAVANRLQTCVRSNDVLARIGGDEF 400

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L+ ++        A  +   +   I +  ++I ++ SIG  +   S     E+L++A
Sbjct: 401 AILLMGKDQPETAVKMAERIVSQLHTAIQIENQDIFISCSIGIVTAGDSHTKPEELLRDA 460

Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK +G      F  S      D ++I+  L  A+E+ +  + Y PI     E +
Sbjct: 461 DVAMYSAKKQGRGRWSIFNTSMREAAIDTLVIQNALRQALEDKDFLVFYQPIYSGNCEHL 520

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG+EAL++W+H   G IS   F+ IAE+L +I  +  +++ +   ++ +WR + +   + 
Sbjct: 521 VGVEALVRWNHATMGIISPDAFIPIAEDLGIIHELGAWVMHQACSEVQAWRKEFSHLDLR 580

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ K+L      + +  +I+ T     ++++  +ESV +  P+    +L ++R++G
Sbjct: 581 LNVNVSGKELSHPGFVDQVTRIIATTGLPAGQLQIEVTESVFLYQPDAIAEVLRQIRQLG 640

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           + + LDDFGT  S L Y+   P D VK + S ++     E+  AI+ SI+ + + +   I
Sbjct: 641 VRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSKAIVSSILSLGRALNLDI 700

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +        L +MGC Y Q   +  P+   ++L ++K 
Sbjct: 701 TAEGVETAEQYNLLRKMGCPYFQGYLLNRPMRSEALLHIIKS 742


>gi|34497075|ref|NP_901290.1| hypothetical protein CV_1620 [Chromobacterium violaceum ATCC 12472]
 gi|34102932|gb|AAQ59296.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 816

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/577 (24%), Positives = 253/577 (43%), Gaps = 15/577 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I  V       Q +  + ER  + +   GD V   D   +     P    + G  S 
Sbjct: 243 LMLITDVTERKRAEQALRDEKERIRITLNSIGDAVIATDANGNITFLNPIAEDMTGWQSR 302

Query: 444 SMHGPIRNWLPYIHI-----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              G     +  I            F  I       R   +     ++  D Q   +   
Sbjct: 303 EALGEP---VEKIMPLRESSQGHAMFNPIRLVLSEQRSVGMAMNCALQRRDGQLLELEDS 359

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             P+ +  G +   I + +D++E +     +   A  D LT +PNR    DR    L  +
Sbjct: 360 ASPILDHAGKLTGAIIVFHDVSEARAMAVKMTHLAHHDALTNLPNRMLLQDRTQQALQQA 419

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A     R  + ++DID +K IND +G +VGD +L  + RR+   L+  D ++R  G+ F 
Sbjct: 420 A-HSGDRLGLYILDIDHFKVINDSMGHSVGDQLLQRVARRLQAALRPCDTVSRQGGDEFI 478

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I++       +    A  M K+I+ P  L      ++ SIG   +        E+ ++A+
Sbjct: 479 ILVPGLGGIEQAGAMADKMLKAISEPYLLDGNRYDLSGSIGVGIYPDDSKNQEELYRHAD 538

Query: 679 LAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N    F      +   R  ++  + +  E     + Y P +      +V
Sbjct: 539 AAMYRAKQEGRNRYRFFSSEIEEALLTRQALERHIRMGAEQGGFLVYYQPKVDAGGGGVV 598

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           GLEAL++W + K   +S S F+ +AEE  +I  + LF+L +   D   W D      + I
Sbjct: 599 GLEALLRWRNDKDEIVSPSHFIPLAEETGLIVPLGLFVLRQACLDGKRWLDAGRR--LRI 656

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++  +++++ C+ ++ ++ +T      ++L  +E V+  + ER+  +L  L+ +G+
Sbjct: 657 AVNVSAVQVMESDFCDAVRRVLKETGLPTELLELEITEGVLAQDVERTMSVLAELKSLGV 716

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
           S+ +DDFGT  S LSYL   P D +K + S +    + R   AI+ +I  MA+ +   ++
Sbjct: 717 SIAIDDFGTGYSSLSYLKLFPLDVLKIDQSFIHDMLDDRHSAAIVAAIASMAQGMGLRLV 776

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A+ +  E   +EL R+GC  +Q      P     I +
Sbjct: 777 AEGVEREEQARELLRLGCRIMQGFLYGRPEPAAEIDR 813


>gi|39936473|ref|NP_948749.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39650329|emb|CAE28851.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains [Rhodopseudomonas palustris CGA009]
          Length = 824

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/561 (25%), Positives = 261/561 (46%), Gaps = 19/561 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +W +D    + ++         G         +R  L  I 
Sbjct: 266 SLKKREESFRLLFDGNPMPMWVFDAQSFEFLSVNDAAVAHYGYPRERF---LRMSLREIW 322

Query: 458 INDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              R+ +     + +  R   + +  +R   AD     ++   R +   +G     + + 
Sbjct: 323 P--REEWIAHGQTLLEMRDSYQSEGNWRHIKADGSEIHVLTFGRRVLF-DGRDGFLVAVV 379

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++K+   I   A  D LT +PNR  +  RL   L  +         VM +D+D +
Sbjct: 380 -DITERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQA-RGSGTMVAVMCVDLDLF 437

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G  +GD +L  +  R+ + +   D++ARL G+ F I+L S     + + FA  
Sbjct: 438 KNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSFAAR 497

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + ++ P ++   E+ + ASIG A   S       + +NA++A+Y AK  GG     F 
Sbjct: 498 LIEILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGCHHFFE 557

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  ++ DL  A    E  L Y P+I L ++ I G E L++W HP+ G IS 
Sbjct: 558 KEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGGFETLLRWRHPERGMISP 617

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S+F+ +AE++ +I  +  ++L +   +  SW        + + +N++        L + +
Sbjct: 618 SDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS-----DVKVAVNLSPVQFRSRNLVQVV 672

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + ++++   P R++L  +ES+ + + E +   L +LR +G+ +++DDFGT  S LSYL 
Sbjct: 673 ISALAQSSLVPHRLELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYLR 732

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +   T     +AI+R+I  + ++++ T +A+ +     +  L   GC
Sbjct: 733 SFPFDKIKIDRSFVKDLTQRPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDVLRAEGC 792

Query: 933 DYIQDSHVASPLGFNSILKLL 953
             +Q    ++    + I  LL
Sbjct: 793 HEVQGFLFSAARPASEICGLL 813


>gi|302060301|ref|ZP_07251842.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
          Length = 711

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%)

Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453
             ER  L    V+ + D +        D+     V   P    I G     + G     L
Sbjct: 117 SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 176

Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 D       ++   + + R  ++ E      D    W+ + I P++N  G    +
Sbjct: 177 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 232

Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545
           + +  DITE+K                           +  E +   AF D LT + NR 
Sbjct: 233 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 292

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             ++ L             R TV+ +D+D +K +ND +G   GD +L  +  R+   ++ 
Sbjct: 293 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 351

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   
Sbjct: 352 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 411

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
                 ++L++A++AMY AK +G      F  S      D ++I+  L  A+EN +  + 
Sbjct: 412 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 471

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI     E +VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   D+ 
Sbjct: 472 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 531

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +WR       + + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+ 
Sbjct: 532 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 591

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
              +L ++R +G+ + LDDFGT  S L Y+   P D VK + S ++     ++  AI+ S
Sbjct: 592 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 651

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ + + ++  I A+ +        L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 652 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 705


>gi|192292258|ref|YP_001992863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192286007|gb|ACF02388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 824

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/561 (25%), Positives = 261/561 (46%), Gaps = 19/561 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +W +D    + ++         G         +R  L  I 
Sbjct: 266 SLKKREESFRLLFDGNPMPMWVFDAQSFEFLSVNDAAVAHYGYPRERF---LRMSLREIW 322

Query: 458 INDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              R+ +     + +  R   + +  +R   AD     ++   R +   +G     + + 
Sbjct: 323 P--REEWIAHGQTLLEMRDSYQSEGNWRHIKADGSEIHVLTFGRRVLF-DGRDGFLVAVV 379

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++K+   I   A  D LT +PNR  +  RL   L  +         VM +D+D +
Sbjct: 380 -DITERRKAEAKIAHMAHHDGLTNLPNRALYQQRLEQALAQA-RGSGTMVAVMCVDLDLF 437

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G  +GD +L  +  R+ + +   D++ARL G+ F I+L S     + + FA  
Sbjct: 438 KNVNDSFGHPMGDRLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSFAAR 497

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + ++ P ++   E+ + ASIG A   S       + +NA++A+Y AK  GG     F 
Sbjct: 498 LIEILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGGGCHHFFE 557

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  ++ DL  A    E  L Y P+I L ++ I G E L++W HP+ G IS 
Sbjct: 558 KEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGGFETLLRWRHPERGMISP 617

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S+F+ +AE++ +I  +  ++L +   +  SW        + + +N++        L + +
Sbjct: 618 SDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS-----DVKVAVNLSPVQFRSRNLVQVV 672

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + ++++   P R++L  +ES+ + + E +   L +LR +G+ +++DDFGT  S LSYL 
Sbjct: 673 ISALAQSSLVPHRLELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYLR 732

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +   T     +AI+R+I  + ++++ T +A+ +     +  L   GC
Sbjct: 733 SFPFDKIKIDRSFVKDLTQRPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDVLRAEGC 792

Query: 933 DYIQDSHVASPLGFNSILKLL 953
             +Q    ++    + I  LL
Sbjct: 793 HEVQGFLFSAARPASEICGLL 813


>gi|229056403|ref|ZP_04195816.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228720877|gb|EEL72426.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 569

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S  +   LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLQDLKLALDESS-IVAITDRNGLITYVNDKFCKISKYKREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KAFFQILWKRILSGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      + +   ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDGLTSLPNRLQLITTVNKMIA-----EKIEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKTHTHDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGKDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELKVALQPIIDLKTKKCTGIEALVRCKTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  D      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPD--YQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRSMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLLVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CD++Q  + A PL    + + L
Sbjct: 540 KSMSCDFVQGFYYAKPLDIGELKEKL 565


>gi|87199456|ref|YP_496713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135137|gb|ABD25879.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 896

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/677 (23%), Positives = 290/677 (42%), Gaps = 20/677 (2%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +   G+A    +F           S        + +  T  ++   ++   R V +I A
Sbjct: 112 RLALMGLAVALPMFLFGSAMGFWGESGQVAWFGCLAVVVTTGVLATVVQS-GRLVAVIAA 170

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
            + I+     +                L   + +   L    +  H        Q   + 
Sbjct: 171 QVGIWSGVTCVASRAGGYFA-----LVLGVAIAIAAYLRQRKIDLHARKKSESDQRAQTR 225

Query: 404 GERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            E        +G    W+ D        +  +A ILG     + G   + L  +     +
Sbjct: 226 AEEILADYEETGQGWFWETDRRGHLAYLSSPVAAILGRRVEELVGRPFSELFNLTEQSGE 285

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                L   +  R    +   R    D +  W  I  RP  ++  +   + G   D+TE+
Sbjct: 286 G-ERTLAFHLSARSSFSELAVRAATRD-EERWWSITGRPTYDTFNNFAGFRGSGTDLTEK 343

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++S E     A  D+LTG+ NR      L  IL L+    +    V ++D+D++K++ND 
Sbjct: 344 RRSQEHASRLAHFDSLTGLSNRFRMSQTLEKIL-LAPQVQHRACAVFLLDLDRFKQVNDT 402

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L  + +R+  ++     + RL G+ F +IL  +    ++   A  + +S++
Sbjct: 403 LGHPAGDALLKQVAQRLERVVGKIGRVGRLGGDEFEVILPGKMERGQLGHMAGRIIESLS 462

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
            P ++    + + AS+G A      +TS  +++NA+LA+Y AK  G      +       
Sbjct: 463 QPYSIEGSRVMIGASVGIALAPDDGVTSEALIRNADLALYAAKDGGRGRFHFYAPDLHSD 522

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R  ++EDL  AV N  L L Y P++R   E+I G EAL++W+HP+ G IS + F+ I
Sbjct: 523 AEERRQMEEDLRDAVSNGGLELYYQPVVRTATEKITGFEALLRWNHPEHGWISPARFIPI 582

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  I  + L    +D+  W +      + + +N++     +  L   +   ++ 
Sbjct: 583 AEDTGLIATIGEWALRTACQDLARWPE-----NVRVAVNVSPLQFANPSLPVVVTNALAT 637

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +  R++L  +ESV + + E +  +   L+ IG+ L LDDFGT  S L YL   PFD 
Sbjct: 638 AQVAAERLELEITESVFLNDDEGTDQMFKSLKAIGVRLALDDFGTGYSSLGYLRSAPFDK 697

Query: 881 VKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           +K + S + G+T+   +  AI+ SI+ +A+ +     A+ +    ++  +  +GC ++Q 
Sbjct: 698 IKIDQSFVRGATQPGSRNGAIIASIVSLAEALGMETTAEGVETLDELDLVRMLGCSHVQG 757

Query: 938 SHVASPLGFNSILKLLK 954
                PL   +    L 
Sbjct: 758 YIYERPLSAMNAAARLS 774


>gi|104780999|ref|YP_607497.1| sensory box-containing diguanylate cyclase [Pseudomonas entomophila
           L48]
 gi|95109986|emb|CAK14691.1| putative sensory box-containing diguanylate cyclase [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/555 (24%), Positives = 255/555 (45%), Gaps = 17/555 (3%)

Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
              AV  +   ++ + D+            +I G +   + G     L   +H      F
Sbjct: 5   YRAAVDAA--AIFSETDLQGRITYVNQQFCSISGYSREELLGANHRILNSGLHE---PAF 59

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQK 523
              + + +   R   + E   RA D   +W+   + P+ + + G + +Y+ I  D+TE++
Sbjct: 60  FLDMWNALAGGRV-WKGEICNRAKDGSLYWVDSTMVPLVDPHTGQVRKYVSIRFDVTEKR 118

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +      D LTG+PNR    D L   L  S   +++   V ++D+D +K +ND  
Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAFSRR-EHIPLAVCMLDLDGFKAVNDGY 177

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +LV + +R+  +L+  D +ARLSG+ F +IL       ++      +  ++A 
Sbjct: 178 GHATGDLLLVEVAQRLQGILRGGDAVARLSGDEFVLILRHIEGPRQLHAALQRVLLALAA 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + +  +T++ASIG   +      +  ++++A+ AMY AK RG N    F        
Sbjct: 238 PYVVRDHVLTLSASIGVTLFPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQELEL 297

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                    +  A+   EL L Y P + +   +++G EAL++W HP  G +   EF+ + 
Sbjct: 298 KATHQTVAQVRQAMREGELCLYYQPKVNMRSGQVIGFEALLRWMHPSKGPVPPGEFLPLV 357

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  +++++    +  W+         + +NIA++ L   +  E +  L+ + 
Sbjct: 358 EQTDLIVELGEWVIDQALTQLGQWQRDQRG--WSLSVNIAARQLQRGDFSERLAQLLGRH 415

Query: 822 -LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+++ L   ESV + N  R    L   R +G+  +LDDFGT  S LSYL  +P  T
Sbjct: 416 PGVDPAQLDLEIVESVAIDNLARVGHCLDACRALGVRFSLDDFGTGYSSLSYLKRLPAQT 475

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +         +A+  ++I +A+     +IA+ +      + L  +GC+  Q  
Sbjct: 476 IKIDKSFVRDILQDHDDLALTAAVIGLARAFGREVIAEGVETVEHGRMLMGLGCELAQGY 535

Query: 939 HVASPLGFNSILKLL 953
            +A P+  + +   +
Sbjct: 536 GIARPMPADEVPGWV 550


>gi|207738819|ref|YP_002257212.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum
            IPO1609]
 gi|206592187|emb|CAQ59093.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum
            IPO1609]
          Length = 1178

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/584 (24%), Positives = 260/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D        V   P    +
Sbjct: 604  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 659

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  RT L          ++   R    D      
Sbjct: 660  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 714

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 715  NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 774

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 775  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 834  VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 888

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY+AK  G N +E F        S R+ ++  +  A+E+ +  L+Y P I     
Sbjct: 889  HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 948

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 949  RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1008

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL  +++  LL+ 
Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +  +A     + +    ER       + D ++DWDI        
Sbjct: 333 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392

Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG  +               +  ++H  D + F   L + +   R    +  RV
Sbjct: 393 ASLHRLLGSDALLTSGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRNAWHHVCRV 452

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  +R +G   DI+++      + 
Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 497



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  +  +  G        
Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTCMPPG-PPPSFAQ 546

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 547 QAQFFTADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 606 LFGTMQDITERRESDEQLRLL 626


>gi|330959085|gb|EGH59345.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 723

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 148/585 (25%), Positives = 265/585 (45%), Gaps = 26/585 (4%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN-- 451
                + +  E+ + A   S D +   +I   R V        + G ++  + G   +  
Sbjct: 146 RAQAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVVGRTAHEI 205

Query: 452 --WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             W            R  +   +  +      E   R  +     + I +  ++ ++   
Sbjct: 206 GIWTD-------TQQREFMVDELRQKGRVHHREMSGRDKNGDPLVLDISVDFITLND--T 256

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +  A DI + K +   I   A+ D LTG+PNR   +DRL+  L L     NLR  ++
Sbjct: 257 ACLLMNARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLMDRLSQQLSLLQ-HQNLRGALL 315

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-- 627
            +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + S  
Sbjct: 316 FLDLDHFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTVARLGGDEFVVLICGLDGSLD 375

Query: 628 ---LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               K+   +  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y A
Sbjct: 376 EVTHKVRVLSDNLRDLLAEPMFLDGHRLQVTPSIGIVLIPDDGLTPADLLKRADIALYRA 435

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + F  S  +  S R+ ++ DL LA+  +E +L +   +     +I G EAL+
Sbjct: 436 KDSGRNTAQFFHSSMQQAVSQRLRLENDLRLALARNEFHLHFQAQVDCRTNQITGAEALL 495

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINI 800
           +W HP++G +   +F+ I EE  MI  +   +L+   +       Q         + +NI
Sbjct: 496 RWQHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNI 555

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +    ++  E ++  + +     + +KL  +E +V+ N + + L +  LR +G+   +
Sbjct: 556 SPRQFRQSDFVERVEHSLKQHQLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAM 615

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +
Sbjct: 616 DDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGV 675

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                +  L R+GC   Q    + PL       LL+ R P     
Sbjct: 676 ETPEQLAFLERVGCYNYQGYLFSEPLPGPQFESLLQLRRPAQATA 720



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      + +   GER  LA+  +    WD D+  +R+  +   A + G+ +        
Sbjct: 14  LTHADALRLLKETGERLELALELAQMGTWDLDVTCNRLQASAQAAFLHGMDAQPFDDDAE 73

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +   + I +R   R    + +      LQ  +R +  +     +  R R   +  G + 
Sbjct: 74  QFFGRLPIEERHRMREAYRAAIENCDDYLQLIYRFQLKNGTSRLLESRARIYRDDQGQLS 133

Query: 511 RYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539
           R  G   DIT+++     ++ E     AF    D++T
Sbjct: 134 RLAGTLMDITQKRAQAALEASEEKFAKAFHSSPDSIT 170


>gi|313111104|ref|ZP_07796933.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
 gi|310883435|gb|EFQ42029.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
          Length = 864

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/619 (22%), Positives = 258/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   +    +  +  
Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  + +           L   FR   +  Q     +    + N  G    Y G A DIT+
Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+I  F   +   I
Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              I        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 532 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP  G I   EF+ 
Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPHRGLIGPDEFIG 651

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL  + +  LL   
Sbjct: 827 FLLSRPLDAHGLRDLLARE 845


>gi|146337630|ref|YP_001202678.1| hypothetical protein BRADO0495 [Bradyrhizobium sp. ORS278]
 gi|146190436|emb|CAL74435.1| conserved hypothetical protein with PAS, GGDEF and EAL domains;
            putative membrane protein [Bradyrhizobium sp. ORS278]
          Length = 1046

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 132/573 (23%), Positives = 247/573 (43%), Gaps = 13/573 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLAS 442
             T I+ +       Q    +    +  +      +   D+  R  V          GL  
Sbjct: 468  VTTIEDISEQRRLEQERDRNYAFLNEIIDHIPSHIIVKDVRDRRYVLINRSSEQGFGLPR 527

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G        +     +      D  +    G    E   +       ++  R   +
Sbjct: 528  QDIVGK--TVFDLMPRPSAEKITADDDRALEQPDGLFLGEHAWQTPGLGLRYITSRRITI 585

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +        I +  D TE++ + E I   A  D LT +PNR  F +R+   ++      
Sbjct: 586  EDEAQRPRYLINVMEDTTERRLADEKIAHLAHFDALTELPNRVLFRERIDEEIERVR--H 643

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 ++ ID+D++K IND LG  VGD++L ++ RRI   L   D++ARL G+ F ++L 
Sbjct: 644  GTFFALLYIDVDEFKGINDSLGHHVGDELLKTIARRIESCLGPEDMVARLGGDEFAVLLT 703

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +  +  ++      +  +I  P   L  +++  ASIG A          ++ K+A+LAMY
Sbjct: 704  TAADQDEVVVVVTEILDTIRKPYRCLGHQLSTDASIGIALAPRDGTERDQLTKHADLAMY 763

Query: 683  HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  G      F  S       R+ +++DL  A+  ++  L Y P++      + G EA
Sbjct: 764  AAKAGGRRTFRFFEPSMDENARARLQLQQDLRRAIVENQFELHYQPLLGFTQNVMTGCEA 823

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++W HP+ G +   +F+ +AE+  +I  I  +++     +  +W        I + +N+
Sbjct: 824  LLRWRHPERGMVPPLDFIPLAEDTGLINEIGDWVMRTACAEAANWPA-----DIRVAVNV 878

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +   L    L   + A +S     P R+++  +E+V++ + + +  +L +L  +G+ + L
Sbjct: 879  SPVQLKSPTLALRIAAALSAAGLPPQRLEIEITEAVLISDDDVALNVLHQLHDMGVRIAL 938

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIY 919
            DDFGT  S LSYL   PFD +K +   ++        AI+++++ +A     T  A+ + 
Sbjct: 939  DDFGTGYSSLSYLKRFPFDKIKIDRCFVSDLNVGSSSAIVQAVVSIAAASNMTTTAEGVE 998

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                   L ++GC  +Q    ++P     + KL
Sbjct: 999  TGAQQSALRQLGCTEMQGYLFSAPKPAAELRKL 1031



 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 11/173 (6%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++  A++   V+ V+     + Q V         + ++ +R   A+      +  +D   
Sbjct: 325 LVGAAVLAVFVIAVM-FSLMIRQIVQQNQVARSRLENEKQRVETALDNMTQGLISFDEHA 383

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             V        +LGL++ ++   +       H          +     +  G ++   R 
Sbjct: 384 CVVMFNQRFIDLLGLSADAIRPGLHLSEVVAH---CKASGAFVGDVASFCSGVIE---RA 437

Query: 486 RAADNQFHWMIIRIRPMSNSNGDIL---RYIGIANDITEQKKS-LEGILCNAF 534
              D              N     L    ++    DI+EQ++   E     AF
Sbjct: 438 TGRDTSQMIAEGSSGRFFNVIDKPLASGGWVTTIEDISEQRRLEQERDRNYAF 490


>gi|206968481|ref|ZP_03229437.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206737401|gb|EDZ54548.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 567

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDREGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    +   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDDMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  +   G+EAL++      G 
Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVVLQPIIDLKTKRYSGIEALVRCMTED-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS +EF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 360 ISPNEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 418 FSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563


>gi|218441767|ref|YP_002380096.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218174495|gb|ACK73228.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 684

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 133/555 (23%), Positives = 259/555 (46%), Gaps = 28/555 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +  V  S + +++ +                                  H         
Sbjct: 152 LASLVELSPNPIFEVNFQGKITYLNSLANQKF---------KDLKKKSLHHP-------- 194

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +L + +   + + +             +          +   ++R      DIT++K + 
Sbjct: 195 LLKNLLDQGKPKDEKIVIREVKIGDEVFEQH---LHYLTENKLIR--SYIFDITDRKMAE 249

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A+ D LT +PNR  F ++L+T L  +  ++ L   VM ID+D +K IND LG  
Sbjct: 250 NSLHYQAYYDTLTDLPNRSLFYEKLSTALAKAYLEETL-IAVMFIDLDGFKNINDTLGHT 308

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +GD++L S  +R+   L+  DILAR  G+ F I++    N  +I   A  +   +  P  
Sbjct: 309 LGDELLGSFAQRLRHNLRSSDILARWGGDEFTILIPQIKNEEEIEICAKRVFSILQQPFQ 368

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           +    + + ASIG A +      +  ++KNA+ A+Y  K  G NH + +    +S  S+R
Sbjct: 369 VGNHLLYLKASIGVAIYPRDGQDAETIIKNADAALYRTKEMGRNHYQIYHPLITSKTSER 428

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  L  A+E  +  L Y P I + ++ I G+EALI+W+HP  G +S ++F+ IAEE 
Sbjct: 429 LEMENLLHQALEKDQFLLHYQPQINIKNQAICGMEALIRWEHPTLGLVSPAKFIPIAEES 488

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I +I  ++L +       W+ +   PP+ + +N++++          +  ++++T   
Sbjct: 489 GLIISIGEWVLRQACEQNRLWQKKGL-PPVRVAVNLSAQQFQQPNFVNIVTKILAETNLE 547

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  ++L  +E+ +M N E S  ++  L+ +G+ +++DDFGT  S L YL  IPF+T+K +
Sbjct: 548 PQFLELEITETTIMKNLEFSCQIVHDLKHMGVHISMDDFGTGYSSLGYLKQIPFNTIKID 607

Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +       + +AI+ +++ + +     +IA+ +  +  ++ L ++ C+ +Q    + 
Sbjct: 608 QSFIKDLQDKPQDLAIISAVLAIGRGFNVRVIAEGVETQHQVELLRKLECEEMQGFKFSK 667

Query: 943 PLGFNSILKLLKERF 957
           PL   +    L   F
Sbjct: 668 PLKPEAAANFLSNHF 682


>gi|253700717|ref|YP_003021906.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
 gi|251775567|gb|ACT18148.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M21]
          Length = 953

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/568 (23%), Positives = 259/568 (45%), Gaps = 10/568 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +       + +  D  R +  V  S D +   D      +       + G  +  M G  
Sbjct: 383 LFKDISERKRLEEDRARLAAIVESSDDAIMAVDREGAITSWNAGAEKMFGYCAQDMKGVH 442

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            ++L  +    ++     L+  +         E           ++ + + P+ +++G I
Sbjct: 443 LSFL--VSPEKKEQVT-CLNDGIRSDGAVTHCEVVHVTRGGSQIYVSLTMSPIKSADGGI 499

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +    IA D+TE+ +  E I   A  D LT +PNR+ F D L   L  +  +      V+
Sbjct: 500 VGTSCIARDVTERTRMEEIIKHQAQHDTLTDLPNRKLFGDFLNLELAQARRNRK-SLAVL 558

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +KK+ND LG A GD +L ++ +R+   ++  D +AR+SG+ F +++     +  
Sbjct: 559 FMDLDHFKKVNDSLGHAAGDRLLQAVAQRLKRCVRESDTVARISGDEFNVLMPDLTQTDD 618

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +      P  L   E+ VT S+G + +     ++ E+L+ A+ AMY AK   G
Sbjct: 619 VGIVVGKIMGVFRTPFVLEGAELKVTTSVGVSMFPDDGDSAQELLQKADGAMYVAKQTPG 678

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + +             ++  L  AV   EL LVY P++ L   EIVG EAL++W HP
Sbjct: 679 NSYQFYNGEINARTVARQNMERRLREAVSKDELDLVYQPLLSLESGEIVGAEALLRWHHP 738

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  ++F+ +AEE   I  I  ++L    R +  W+ Q     + + +N+++++   
Sbjct: 739 EHGLLLPAQFLPVAEETGAIVPIGEWVLFNACRQMRLWQSQGFD--LSVAVNLSNREFHQ 796

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               +     +S++   P+ ++L  +E  +M NP  S   + RL  IG++ ++DDFG   
Sbjct: 797 PNFIDLAMRALSQSGLDPASLELDVTEKAIMDNPAFSLRNMRRLTDIGVAFSVDDFGVGA 856

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS +  +P   VK + S +         + ++ ++I M+ +++  + A  +     + 
Sbjct: 857 SSLSRIKELPIAKVKIDRSFIRDILTEPNDLDVVSAVICMSHSLKMRVNAVGVESAEQLA 916

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +   GCD +Q   ++ PL  +   +LL
Sbjct: 917 LVGSFGCDEVQGDLISRPLPPHEFERLL 944



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I    ++ S A   +    W+W++       + ++  ILGL   S+     + L  +H
Sbjct: 142 ERIRRREQQLSQAERITHLGSWEWNLESGETVWSDELYRILGLEPESVAATFESLLRMVH 201

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR+     +              +R+  AD +   +  ++  + + +G     IG  +
Sbjct: 202 PADRETMEKAVQQLRETGSALGIQYYRLLRADGETRIVRGQLESVRDGSGRQT-VIGACH 260

Query: 518 DITEQKKSLE 527
           D+TE K +  
Sbjct: 261 DVTELKWAEA 270



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 6/146 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHG 447
            V    +    + +   R S     + D++    +     +        +LG     + G
Sbjct: 261 DVTELKWAEAALRASERRFSKIFQATPDLLSITSLKDGTILEVNEAFLRVLGYQRQEVIG 320

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                L     +D+      L   +  R      E R++  + +    ++    +   NG
Sbjct: 321 TYAGELGLWADSDQP---AALLQQLEERGEVRDIEVRLKGRNGRELEGLVSAELI-EING 376

Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533
           +    + +  DI+E+K+  E     A
Sbjct: 377 NP-YLLTLFKDISERKRLEEDRARLA 401


>gi|109897986|ref|YP_661241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudoalteromonas atlantica T6c]
 gi|109700267|gb|ABG40187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Pseudoalteromonas atlantica T6c]
          Length = 1505

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/569 (24%), Positives = 264/569 (46%), Gaps = 19/569 (3%)

Query: 400  IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    E+  L   ++    D V+  D     ++         G            +    
Sbjct: 944  LKEAEEQLKLFKRSIETISDGVFIADTSFRYISVNKAYCKYTGETREQALASYLTFHQ-- 1001

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +      F   +   +  + G    E   R  + + + M + I  +++ +G I  Y+G+ 
Sbjct: 1002 YP---GAFTEEVKKSLRQK-GNWNGEVESRRINGEKYEMELNIDAINDEDGRISHYVGVF 1057

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DIT +K + + +L  A  D LT +PNR  F          +      +  ++ +D+D +
Sbjct: 1058 SDITPRKSTEKELLKLANTDPLTDLPNRSFF-----QASHNNIVRRGTQHALVCLDMDNF 1112

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            KKIND LG   GD ++  + RR+ +L        RL G+ F I+L  + +   +  F  +
Sbjct: 1113 KKINDSLGHQTGDLLIKQIARRLQKLAGKSATCYRLGGDEFSILLDKDTDVHSVTHFTQS 1172

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
            +   +A P  +  +E  + ASIG A +     +  E+LKNA+ AMY AK+ GGN  + F 
Sbjct: 1173 ILDDLARPFLINHQEFVLGASIGIAFYPEDGSSPQELLKNADTAMYFAKNAGGNKYQFFS 1232

Query: 696  -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++     ++ I+  +   ++     + Y P I +   ++V +EAL++++HP+ G +S 
Sbjct: 1233 GEMNQNAVRQLQIENLIRHGLKEDLFNVYYQPKIDIATGKLVSMEALVRFEHPEKGIVSP 1292

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            ++F+ ++E+   +  I   +L +   D   W          + +NI+++     +L E +
Sbjct: 1293 AQFIPLSEQTGQVIDIGEVVLRKACEDTKRWVKAGIFTG-RVAVNISARQFELPDLDEKI 1351

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++++ K   SP  ++   +E  +M +P+ +  ++ RLR+ GI L LDDFGT  S L+YL 
Sbjct: 1352 ESILQKADLSPLHLECEITEGTLMQDPDNALRMMTRLRERGIHLALDDFGTGYSSLAYLK 1411

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P +T+K + + +     +     +  +II +A N+   ++A+ +  E  +  L R  C
Sbjct: 1412 RFPLNTLKIDKAFIDDIATSSVDRHMTAAIITIAHNLGLKVVAEGVELEEQMSILRRYEC 1471

Query: 933  DYIQDSHVASPLGFNSILKLLKERFPLVK 961
            + +Q    + PL  +   +LLKE   L K
Sbjct: 1472 EMLQGYLYSKPLSSSRFERLLKENHQLNK 1500



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 4/174 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           + +       + + AL+   +L++  I   V Q+  +       I    ER  L +  SG
Sbjct: 780 LTVNIEPPLWLHRNALIFYCILVLFSILAVVKQYR-SKRVARLAITESEERLKLTLWSSG 838

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D +WDWDI + +V  +     I+      +      +   IH ND    +  L+  +  +
Sbjct: 839 DELWDWDIYQGQVFRSNTWG-IMDFPQDDIRVN-SAYQANIHQNDLKRVQDALNEHLQDK 896

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
               +  +R      ++ W++ R + +  ++N   +R  G   +I+  K++ E 
Sbjct: 897 TEHFEVTYRASTFKGEWLWVLDRGKVVSRDNNNQPVRMTGTFKNISHLKEAEEQ 950


>gi|291615266|ref|YP_003525423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
 gi|291585378|gb|ADE13036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sideroxydans lithotrophicus ES-1]
          Length = 713

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 149/599 (24%), Positives = 257/599 (42%), Gaps = 47/599 (7%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD--------IATILGLASG 443
                 + +    +     +  S D V  +D    R+   P            ILG    
Sbjct: 127 ERKRKEEQLIVLEQDTRTLIENSPDTVARYDHECRRIYVNPALASSFPGGAEKILGKKPS 186

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G              D F   +          L +E + +  D +     IR+    
Sbjct: 187 EIPGGPEF----------DKFEAKIVEVFATGNNAL-FELKWQGKDGKELCNHIRLTAER 235

Query: 504 NSNGDILRYIGIANDITEQ-------KKSLEGILC-------NAFQDNLTGIPNRQSFLD 549
           +S+G +   + I  DITE        K++   +          A  D LTG+PNR+  LD
Sbjct: 236 DSSGRLTSVLAIGRDITELYESRAALKRANAQLENMNDLLQSQATSDPLTGLPNRRFMLD 295

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL   L  S+        ++ ID+D +K +ND LG  VGD +L  +  R+   ++  D +
Sbjct: 296 RLKHALASSSRSGR-EGALLFIDLDNFKTLNDTLGHDVGDQLLQQVAHRLETCVREGDTV 354

Query: 610 ARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
           ARL G+ F ++L   +        +       +  ++  P  L + E   T SIG   + 
Sbjct: 355 ARLGGDEFVVMLEDLSEKDLEAAAQTEAVGEKILAALNQPYQLGKHEYRNTPSIGATLFN 414

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
             + +  E+LK A++AMY AK  G N +  F      +      ++ +L  A+E  + YL
Sbjct: 415 DHQQSLDELLKQADIAMYQAKRAGRNALRFFDPQMQETINSRATLENELRKALELHQFYL 474

Query: 723 VYHPIIR----LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            Y   +            G EALI+W HP+ G +S ++F+ +AEE  +I  I L++L+  
Sbjct: 475 FYQVQVDSVQEDGSHRATGAEALIRWAHPERGLVSPAQFIPLAEETGLIVPIGLWVLDTA 534

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              + +W+  A    + + +N+++K     +    + A + +    P  +KL  +ES+++
Sbjct: 535 CAQLKTWQHDALTRGLVLAVNVSAKQFRQPDFVAQVDAAVQRHGIDPKLLKLELTESLLL 594

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            N + +   +  LR+IGI  +LDDFGT  S L YL  +P D +K + S +          
Sbjct: 595 ENIQDTIATMNALREIGIRFSLDDFGTGYSSLQYLKQLPLDQLKIDQSFICDLVSDSSDR 654

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           AI+R+II MA+++   +IA+ +  E   + L   GC + Q    + P+  N     L+ 
Sbjct: 655 AIVRTIIAMAQSLNLNVIAEGVETEAQRQILLEKGCIHHQGYLFSKPVPINQFEAQLRR 713



 Score =  101 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-LGLASGSMHGPIRNWLPYIHINDRDN 463
           ER  LA+  +G  +W+ +++   V+ +     + LG ++  +   + N+   IH +D   
Sbjct: 9   ERLELALEAAGLDLWENNLITGEVSRSAAKTFMELGYSNEEITDCLDNYFTLIHSDDVPV 68

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522
            ++ ++  +   + + + EFR+RA +  + W     + M  + +    R++G+  +I E+
Sbjct: 69  VQSAINDHLSGSKEQYRCEFRIRAKNGSWVWFANYGKIMDRHGDDRGQRFVGVTFNIDER 128

Query: 523 KKSLEGILCNAFQDNLT 539
           K+  E ++    QD  T
Sbjct: 129 KRKEEQLIVL-EQDTRT 144


>gi|119946750|ref|YP_944430.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119865354|gb|ABM04831.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 608

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/577 (23%), Positives = 267/577 (46%), Gaps = 14/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + +H       ++ I +   R +  +  S + +   D  +  +        I G ++  +
Sbjct: 31  LFEHEEKEKLAAELIIAREFRIAAIIFESQEGMLVTDANKHILRVNKAFTRISGYSAEEV 90

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G            D+  ++ + DS         + E   R  +   +   + I  + ++
Sbjct: 91  IGQTPKLFSS-GRQDKVFYKAMWDSI--NTTNTWEGEIWNRCKNGDIYLGHMTITAVRDT 147

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              I  Y+    DIT  K +LE I   A+ D +T +PNR   +D+L   L  SA   N  
Sbjct: 148 GNMISNYVATITDITLNKAALEKINNLAYFDQITQLPNRLFLVDKLNLALAESA-HSNHH 206

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ ID+++ K I+ + G +V + +L  ++ R+ ++++  D +AR+SG+ F I+L + +
Sbjct: 207 GALLFIDLNQLKIIHSIHGYSVRNLLLKQVSTRLTKIVRKADTIARVSGDEFVILLENLS 266

Query: 626 NSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   +I + A  +  S+  P  L   +   T SIG   +  ++  S ++LK A++A
Sbjct: 267 QQNIEVTTEIQNIAKKIIFSLNQPYQLNMYKYRGTVSIGATIFNGNEFASEKLLKQADIA 326

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M+ +K  G N +  F  +   +      +++ L  A+E+++  L Y   +     + +G 
Sbjct: 327 MHQSKVAGRNRLCFFNQTMQEAITARAEMEQKLREAIEHNQFQLYYQIQVS-SSGQALGA 385

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G IS   F+ +AEE  +I  I  ++L      +  W+       + + +
Sbjct: 386 EALIRWQHPEDGQISPFNFIPLAEETGLILPIGEWVLNTACAQLKKWQQNPLTQDLVLAV 445

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++  +   +  E +++++ K   +P R+KL  +ES+++ N       +  LRKIG+  
Sbjct: 446 NVSALQIHQEDFVEQLKSILQKHKITPERLKLELTESMLVENVSGIITKINTLRKIGVLF 505

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFGT  S L YL  +P + +K + S +          AI+R+II M+ N+   +IA+
Sbjct: 506 SLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLITDTNDRAIVRTIITMSHNLGLNVIAE 565

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +      + L   GC   Q    + P+  +    L+
Sbjct: 566 GVETVEQKQYLLSEGCMNYQGYLFSKPVPIDEFEALI 602


>gi|256829294|ref|YP_003158022.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Desulfomicrobium baculatum DSM 4028]
 gi|256578470|gb|ACU89606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfomicrobium baculatum DSM 4028]
          Length = 1075

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 156/563 (27%), Positives = 258/563 (45%), Gaps = 18/563 (3%)

Query: 402  SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  LA      + + +   +         P    I G ++    G        I  
Sbjct: 513  KAEEKLLLAAKVFENTVEGIVVTNTEGTIEQVNPGFTVITGYSADEAVGSNP----RILK 568

Query: 459  NDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +DR   +F   + + +    G    E   R  D + +   + I  + N  G    Y+ I 
Sbjct: 569  SDRHAQHFYQEMWTKLTQD-GHWAGEIWNRRKDGESYPEWLTISAVKNEAGQTTNYVSIF 627

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DITE K+  + +   A  D LTG+PNR    DRL   L   A     +  ++  D+D +
Sbjct: 628  HDITELKRQQDALEYQAQHDALTGMPNRILLGDRLRMALAQLARSGG-KLALLFFDLDNF 686

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG  VGD++LV L+RR+  LL+  D LARL G+ F I+L    +    +  A  
Sbjct: 687  KTINDGLGHGVGDELLVDLSRRLERLLRSGDTLARLGGDEFLILLPEIESVDAASHIATR 746

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            M  ++  P +  + E  VTASIG          + +++KNA++AMY AK  G N+ + F 
Sbjct: 747  MLDALKAPFHHGDVEYFVTASIGLTIAPDDGNEAPKLIKNADMAMYRAKSMGRNNYQYFT 806

Query: 697  VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 +      ++  L  A+E  E  L Y P++ +    I+G EALI+W   +   IS 
Sbjct: 807  PEMDVAAHRRISMEYKLRKAIEAQEFELFYQPLVHIQSGHILGAEALIRWR-CEGKLISP 865

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +EF+ +AEE  +I  +  ++L   A     W+D  +   + + +NI+S+     +L   +
Sbjct: 866  AEFIPLAEESALILPLGDWVLRTAAHQAKLWQDAGHD--LTMSVNISSRQFSGADLAVTL 923

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + ++  T   P R+    +ES++MG+  ++   L  LR+ G +  LDDFGT  S LSYL 
Sbjct: 924  REVLLDTELRPGRLYFEITESMLMGDVSKAETTLLNLREAGGTFFLDDFGTGYSSLSYLK 983

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S +          AI+ +I+ MA+ +   I+A+ +  +     L  MG 
Sbjct: 984  RLPIDGLKIDRSFIKDITDDSDSRAIVAAIVSMARTLNLRIVAEGVETQAQRGLLASMGP 1043

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
              +Q    + P+       LL  
Sbjct: 1044 IVLQGYLASRPVPAQDFEALLSR 1066



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 9/174 (5%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSLAVLGSGDIVWD 420
           I+  L+   V + +  G T +     T    Q       + +           +   V  
Sbjct: 351 IRTTLIALGVFLFVGTGITAMLFFFNTRLSRQVQERTAALSASERSFRAFFEMASVGVAQ 410

Query: 421 WDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           ++    R +      + ++G ++  +     +    +H +D       + S V   +  +
Sbjct: 411 FEGDTRRFIKVNRKFSDLMGYSAAELGT--LSPRDLVHPDDWQASEEAMKSLVTKEQKEI 468

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             E R         W +  I P+ +       Y+ +  DIT  KK+ E +L  A
Sbjct: 469 TLEKRYVRKGGGVFWGLATISPLWDQGEHPESYLAVVRDITVAKKAEEKLLLAA 522


>gi|56478889|ref|YP_160478.1| signal transducer protein [Aromatoleum aromaticum EbN1]
 gi|56314932|emb|CAI09577.1| putative signal transducer protein with histidine kinase domain
           [Aromatoleum aromaticum EbN1]
          Length = 920

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 145/586 (24%), Positives = 271/586 (46%), Gaps = 23/586 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV--RDRVTTTPDIATILG 439
           +G  + Q                E+ +LA       V    I       T      +I G
Sbjct: 338 VGRALAQAQELLHQREADRAQAEEKLALAATALDSAVEGVVIARGGRIATVNRAFTSITG 397

Query: 440 LASGSMHGPIRNWL----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             S  + G     L       H NDR               G+ Q E   R  + + +  
Sbjct: 398 YRSAEVIGQPLAILLAEAEKTHRNDRRRAMC--------ETGQWQGEVHGRRKNGEMYPA 449

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              I   +  + +++  + + +DI+  K+    +   A  D LT +PNR  F +RL  +L
Sbjct: 450 WSSISRAAYGSDEMI-LVCVFSDISAAKQYEARLQHLAHYDALTELPNRLLFRERLADML 508

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +    N+   ++ ID+D +K IND LG A GD++L  +  R+G  ++  D  ARL G+
Sbjct: 509 VRAERHGNM-LALLFIDLDGFKPINDTLGHAAGDELLRRVAERLGGCVRASDTTARLGGD 567

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI--TVTASIGFASWTSSKITSSEM 673
            F ++L    +  +    A  +  ++  P  L  +     ++ASIG   + S  + +  +
Sbjct: 568 EFAVLLDELRSPEEAGIIARNILDTLERPYILAGQPQCQYISASIGIGCYPSDSLDAETL 627

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLM 731
           L+ A++AMY AK  G N    F           +     L  A++  EL LV+ P +   
Sbjct: 628 LRQADMAMYRAKQEGKNRYRFFAPEINAQASERLFMANSLRAALDRDELRLVFQPCMDFA 687

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             E+ G+EAL++W+HP+ G I  S F+ +AEE  +I+ I  ++L   AR +  W++    
Sbjct: 688 TLEVAGVEALVRWEHPQKGTILPSRFISLAEESGLIEPIGEWVLREAARRVREWKNAGIF 747

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + +N++ +    ++L   +  ++ +   +P  ++L  +E ++M +PER+ ++L  L
Sbjct: 748 AG-RVAVNLSPRQFRRSDLASRLLVVLDEAGLAPRDLELEVTEGMIMEHPERAVVVLTEL 806

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
              G+S+++DDFGT  S L+YL   P  ++K + S ++G        ++ R+++ +AK++
Sbjct: 807 VAAGVSISIDDFGTGYSSLAYLKRFPVHSLKIDRSFVSGLPGDRNDRSLTRAVVAVAKSL 866

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +++A+ +     +  L R+GCD+ Q  + + PL   ++   L+E
Sbjct: 867 GLSVVAEGVEHAGQVDFLRRIGCDFAQGHYFSRPLDPAALGAFLRE 912


>gi|90418289|ref|ZP_01226201.1| putative sensory box/GGDEF family protein [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337961|gb|EAS51612.1| putative sensory box/GGDEF family protein [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 792

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 162/731 (22%), Positives = 298/731 (40%), Gaps = 34/731 (4%)

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI------ACIAILFCMS 300
           S   LIW       +  S    +  +  + R    V   + +          +   + ++
Sbjct: 71  SPWALIWLLGLSYIVLVS----IRAWSRFQRRAPLVSASSRATAHAVRSAFILGAWWGLA 126

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
                 ++     ++ +++           +   +RA+      I +F+  +        
Sbjct: 127 ILTFYPSSDGDAKSVIAVIAMGMICGGGFALSALKRALQAFI--IPLFVGSVVALGISQG 184

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGD 416
              ND    AL+ G   IV        + +       Q +        L +     G+ D
Sbjct: 185 --TNDYFLLALLLGFTFIVYRASCARGELLQENLEGHQKLAEQSSIIELLLREFEEGTSD 242

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +W        V      + I G  +  +               +    + +   +  R 
Sbjct: 243 WIWQTGHDGQLVRGGDRFSQIFGRGTDRLIPNGDQTFAG-----QGLDLSPIAQPMLERT 297

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
              +    + +      W+ +  +P+   +G    Y G+A+DIT    +   I   A  D
Sbjct: 298 PFRETIIEIPSPQGA-AWIAMTGKPIFGHDGAFTGYRGVASDITATTHAERRIAYLAHHD 356

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+ NR  F + +  I   S        +++ +D+D +K IND  G   GD +L  + 
Sbjct: 357 SLTGLANRSWFAEEIDRICA-SPPPQGPTSSLLYLDLDNFKLINDRNGHLTGDQLLRQVA 415

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+  +++  D++AR+ G+ F I+  S  ++      A A+    A P +L      V  
Sbjct: 416 ARLLRIVEPGDMVARIGGDEFAIVAHSAPDTASADSLATAILACFATPFSLGAELANVGC 475

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714
           S+G A          ++L+NA+LA+Y AK  G N    F         DR  ++ DL  A
Sbjct: 476 SVGIAFPGLDGANPDDLLRNADLALYEAKAAGKNTFCFFESEMAQRLRDRHRLEYDLRCA 535

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           VE +EL L Y PI+     + +G EAL++W+HP  G +    F+ +AE+   I  I  ++
Sbjct: 536 VERNELVLNYQPIVDSRTRQTLGFEALVRWEHPLHGRVQPDHFIPLAEQTGAICGIGAWV 595

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L    R+  SW D      + + +N++        +   ++  ++ +  +  R++L  +E
Sbjct: 596 LREACRNAASWGDH-----LTVAVNVSVDQFRHGTIMTDVEDALASSGLAADRLELEITE 650

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S+ + +PE    +L RLR +G+ + LDDFGT  S LSYL   PFD +K + S +    + 
Sbjct: 651 SLFIDDPEAVVTVLHRLRSLGVRIALDDFGTGYSSLSYLRKFPFDKLKIDRSFVNAIKDD 710

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           RIA  IL +I+ + + ++ ++ A+ +     I  LTRM C+  Q  + + P+    +   
Sbjct: 711 RIAHGILETILALGRVLDLSVTAEGVEDAEQIDILTRMTCNQFQGYYFSRPMEAADLGAY 770

Query: 953 LKERFPLVKNT 963
           L   F     T
Sbjct: 771 LLRDFCATAET 781


>gi|259909891|ref|YP_002650247.1| sensory box protein [Erwinia pyrifoliae Ep1/96]
 gi|224965513|emb|CAX57045.1| sensory box protein [Erwinia pyrifoliae Ep1/96]
 gi|283479976|emb|CAY75892.1| Heme-regulated cyclic AMP phosphodiesterase [Erwinia pyrifoliae DSM
           12163]
          Length = 819

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/529 (26%), Positives = 244/529 (46%), Gaps = 14/529 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  + +        +LG +     G     L  +       F   L S    + GR + E
Sbjct: 295 VSGEILLINHRAQRLLGGSQRDFIGKRA--LECMTAAMSAYFMQ-LSSAAQRKGGRQRNE 351

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            ++         +      +   +      + IA+D+T+Q+ +   I   A  DNLT +P
Sbjct: 352 RQLTTPSGDRI-ISGSASIVCGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 410

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F   LTT L     D      V+ +D+D +K +ND LG  VGD +L S+  R+  +
Sbjct: 411 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 469

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D LAR  G+ F I+L    +S +    A  + ++I  P  +    +++  SIG   
Sbjct: 470 LRDRDTLARNGGDEFSIVLPGLTHSEEAEAVARRLIETIRPPFTIDGHNLSIGLSIGITL 529

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720
             +   +   +L+ A++A+Y AK  G N  E F  +       R +I+ DL  A+   +L
Sbjct: 530 AQNGMTSPDYLLRCADMALYAAKRNGRNRFEYFTKAMGDTAQKRRVIENDLREAITYRQL 589

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI      EI+G EAL++W HP+ G I   EF+ IAEE  +I ++  + L    R
Sbjct: 590 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPIAEETGLIHSLGAYALYEACR 649

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  SW  +       + +N++     ++ L   ++  + ++  +P R+++  +ESV++ N
Sbjct: 650 EAASWPGEQ-----TVAVNLSPLQFKNSALIAVVEGALKESGLAPHRLEVEITESVLLDN 704

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
              +  +L  L+ +G+ + LDDFGT  S LSYL   PFD +K + S +    + R   AI
Sbjct: 705 TLANIDMLRELKALGVHIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMHDSREALAI 764

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +R+I  M+++++  I A+ +      + L   GC   Q      P    
Sbjct: 765 IRAITGMSRSLDIQITAEGVESNEQFQCLKAEGCTLFQGYFFGRPQPSE 813



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 3/153 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATI 437
             L+G+  +    +     Q      +   L V    D  ++  D+    V         
Sbjct: 108 GKLLGYAKMTRDCSEQQRLQREQQRDQTFRLLVESVNDYAIYMIDLKGLVVNWNAGACRA 167

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G     + G   ++  +    DR       +       GR +        D       +
Sbjct: 168 KGYTGNEIIGK--HFSCFYGEQDRRLNLPEKNLQQATLTGRFEDSGWRYRKDGSAFRAHV 225

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            I  + N  G+++ +  I  D TE ++  + IL
Sbjct: 226 VIDAIRNDGGELIGFAKITRDCTEVREYEQQIL 258



 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V+      +  + +       G     + G  RN+  +    D+   +T L   V    
Sbjct: 20  AVYMLTPEGNVASWSRGAQHAKGYLPAEIVG--RNFSCFYSQQDQMQGQTQLGLQVAREA 77

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           GR   E      D    W  + I  +   +G +L Y  +  D
Sbjct: 78  GRFTTEGWRYRKDGSAFWAHVVIDAIYGDDGKLLGYAKMTRD 119


>gi|239978097|ref|ZP_04700621.1| hypothetical protein SalbJ_01580 [Streptomyces albus J1074]
 gi|291449996|ref|ZP_06589386.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291352945|gb|EFE79847.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 705

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 129/573 (22%), Positives = 247/573 (43%), Gaps = 16/573 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             + A    ++ +     R      G+   +    +    +     +  + G     +  
Sbjct: 134 AALDARSAVAEALHDSEVRFRAVFQGAAIGIAIASLDGRVLEANDTLVRMFGGLGHPVRR 193

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +  W   +H +D  +   +    V   R   + E     +D    W  + +  + +++G
Sbjct: 194 NLTEW---VHPDDAPHVWNLYGELVRGERESYRVEKPFFRSDGTVLWTNLTVSLLRDADG 250

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +    + +  D TE++     +   A  D LTG+PNR  F +RL   +         R +
Sbjct: 251 EPQYQLALLEDTTERRLLHLRLRYEATHDALTGLPNRTLFFERLEKAVTR----PEGRFS 306

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENN 626
           +  +D+D +K +ND LG A GD +LV +  R+        +++ARL G+ F  +     +
Sbjct: 307 LCYLDLDGFKTVNDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTDPRD 366

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               ++ A  + +++  PI++  RE+ V  SIG     + +   +E+L++A++ MY AK 
Sbjct: 367 EPGHSELAGRILQALEAPISIDGRELLVRGSIGVVDGPTGERGPAEVLRSADITMYRAKS 426

Query: 687 RGGNHVE--SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GGN  E       +    R  +   L  A+E  E ++ Y P++ L D  + G EAL++W
Sbjct: 427 AGGNRFELADPESDARAITRHALTTALPAALERGEFFIEYQPLVHLGDGSVRGAEALVRW 486

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G +    F+ +AE   +I  +  ++LE   R    W+   +  P+ I +N++   
Sbjct: 487 AHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEGAVRQARRWQ-GTDNGPVRINVNVSPMQ 545

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    L      ++ +    P  + L  +ES ++G  +     L RL ++G+ + LDDFG
Sbjct: 546 LHHPGLVADTVDILEREGLEPGALCLELTESALIGADDDLLKPLRRLAEMGVDIALDDFG 605

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           T  S L+ L  +P   +K + S   G            I+  I+ +A +++ ++  + + 
Sbjct: 606 TGYSNLANLRRLPVSVLKLDRSFTRGMQQYPADPVDRKIVEGIVGLAHSLDLSVTVEGVE 665

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                  L  +GCD  Q    A P   + +  L
Sbjct: 666 TGAQADALRELGCDTAQGWFYARPGPPDRLHTL 698


>gi|70733444|ref|YP_263219.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68347743|gb|AAY95349.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 954

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/578 (23%), Positives = 257/578 (44%), Gaps = 9/578 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +          + +       +     + + +   D     +      + + G   
Sbjct: 380 RVLRMAGTRRDISADKELEVQRNLAATVFEAASEGIVILDPDYALIAANQAFSQVTGYQI 439

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G     L      D      ++   +    G  Q E      + + +   +++  +
Sbjct: 440 EDMLGRNVVELSC--SRDARRHYPLIHQALEQY-GSWQGELVETRKNGELYPQWLQLNVV 496

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +   +G   D++ +++S E +      D LTG+ NR  F +RL           
Sbjct: 497 RDKRGKVRHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREA-HQRVRQG 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ I++D++K +ND LG  V D +L  + RR+   L   D +ARLSG+ F ++  
Sbjct: 556 GRSLALLHINLDRFKLLNDSLGHEVADQLLQKMARRLVNALPEADTIARLSGDEFAVLFD 615

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +   +   A  +   + +PI +   E+ V+AS+G +    S    + ++  A +AM 
Sbjct: 616 AYGSLSSLTRVATRLLSKLRLPITVEGHELVVSASMGISMLPDSAREIAALISQANMAMA 675

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAKH GGN+ + +  S   S   R+ ++  L  A+E  +L + Y P + L    +   EA
Sbjct: 676 HAKHLGGNNFQFYTESLQASTLERLQLENQLRKAIEEGQLTVFYQPKLCLASGRLNAAEA 735

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++WDHP  G +   +F+ +AEE  +I  I  F+L +  R    W+ Q    PI + +N+
Sbjct: 736 LVRWDHPVMGRVPPGDFIGLAEETGLIGPIGEFVLRQACRQACEWQRQGL-EPIRVSVNL 794

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L   ++ ++ +T   P  ++L  +ES ++ + E       +LR +G+ L +
Sbjct: 795 SVYQLRQGKLVSLVRQVLEETGLEPHFLELELTESQLLDSVEHIIATFQQLRGLGVKLAI 854

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  IP D VK + + + G  E  +  AI R+II MA  +   ++A+ +
Sbjct: 855 DDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLAEGGEDAAITRAIIAMAHGLSLKVVAEGV 914

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                +  L    CD +Q   ++ P+    +  LL+ +
Sbjct: 915 EDPAQLAFLKAEHCDEVQGYLISRPVAAEGLALLLQAQ 952



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/383 (13%), Positives = 119/383 (31%), Gaps = 37/383 (9%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
             +  LY+G ++    +L   L   +++   +  +        +L  +++    ++   +
Sbjct: 28  ERTRLLYQGSLLPTLFMLLNGLVCTWLLWSPARYLLLSVWMVWLLALVALRVIQVAAFDS 87

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                           L S++                  ++  + +  +     +S    
Sbjct: 88  AIPSRQAQPVWQRMFLLGSAVSGLTLACAGIAL-VPTDNFLQQAWVFGLIGAAILSASVA 146

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
              +  A ++     L     I Y    G ++        +++ +    +   + + +  
Sbjct: 147 YAVSLQAFLSFTLPCLL--PAIAYLFWGGDDQQRGWGWLGLILLVSLSVVAWQVNRLMQR 204

Query: 365 DIIQPALVGGLVL--------------------------------IVILIGFTVIQHVLA 392
            +++      L+                                     +   V Q  L 
Sbjct: 205 GLLRRFQNQALIEHLQNAQGRSDQLNRELAREVEQRRRAEEQLREAQTGLEQRVAQRSLE 264

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +Q +     R +LA+  S   +WDW++  D V  T  I  + GL    +   + + 
Sbjct: 265 LDAANQALSKSEARLALALNASELGLWDWNLQTDEVHHT-QIKELFGLEPEDVTAMLSHL 323

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511
            P +H  D    +  L   +  R    Q E+RVR     + W+  R R +  + +G +LR
Sbjct: 324 KPRLHPEDLPLLKRALVEHLKGRSDDYQVEYRVRHGAGHWVWIEDRGRAVERSPSGRVLR 383

Query: 512 YIGIANDITEQKKSLEGILCNAF 534
             G   DI+  K+        A 
Sbjct: 384 MAGTRRDISADKELEVQRNLAAT 406


>gi|256821584|ref|YP_003145547.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
 gi|256795123|gb|ACV25779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kangiella koreensis DSM 16069]
          Length = 887

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/565 (23%), Positives = 253/565 (44%), Gaps = 19/565 (3%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPY 455
              ER  +    V  S   +   D   D    +   P    I G +   + G     L  
Sbjct: 332 QHEERAKILERSVESSTHGLLISDARADDFPTIYVNPAFERITGYSKEDIIGKNCRILQG 391

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +     R  + + +  +   +    +    D    W  + I P+ + N ++  +IG+
Sbjct: 392 --PDTDQKVRQAIHNALEQQTE-ISTIIKNYKKDGTPFWNELLISPVKDDNDNVTHFIGL 448

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            NDITE+ +  E +  +A  D LT + NR +    LT+       D      ++ ID+D 
Sbjct: 449 QNDITERIQRQETLEFHASHDPLTHLKNRSALERYLTSW--AKNKDQISNTYILFIDLDG 506

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG   GD +LV   +R+   +  P++LAR  G+ F  ++    +S ++   A 
Sbjct: 507 FKPINDSLGHEFGDQILVETAQRLNSEIVEPNMLARFGGDEFVAVIQDLTDSHQVEALAR 566

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +A    + + E++++A+IG  S   S     E+++ A++AMY AK RGG+++   
Sbjct: 567 KLLERVAESYKVDDIEVSLSAAIGITSSQESFKHPMELIQRADIAMYEAKKRGGSYIYWH 626

Query: 696 RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 +    +     L  A+  ++  L Y PI+   +  I G+EALI+W HP  G +S
Sbjct: 627 TAELNTNIDQQVAVRAQLQDAILQNQFELFYQPIMSHDNN-IGGVEALIRWKHPIKGYVS 685

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ +AE    I  I+ ++L R   DI   +         + +N +       +  E 
Sbjct: 686 PAEFIPVAERTGQIIPISEWVLNRACTDIQELKRFGIN---SVSVNFSPIQFYREDFVEK 742

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   +      P  I +  +E+V++ + +    LL  LR++G+ + +DDFG+  + L YL
Sbjct: 743 IAETLKHHNIQPGEITVEITENVLVHDTDHITELLNELRQLGLDVAIDDFGSGFASLRYL 802

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P + +K + S      +     AI R I+ M   +E  ++A+ +  + + + L    
Sbjct: 803 NMLPVNKLKIDRSFTGNIHQNKHNAAITRGILGMTTEMEIEVVAEGVETDEEYQYLREHK 862

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD++Q      P+    +++ +K R
Sbjct: 863 CDFMQGYLFCRPIPIKELIEWVKNR 887



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ++       + + V+ +D+     +       ++  +   +     +    +   D   
Sbjct: 217 EQQNRSLFTHNPEAVFTFDLEGHFTSVNKATCELMKCSENELLNQHYSVA--VTEQDLAR 274

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 +       R +    +   D     H++ +   P+   +G +    GIA D+T 
Sbjct: 275 TDEHFYAARRGIPQRYE----ILTPDMQGNIHYLHVTNMPII-VDGQVTGVHGIALDLTR 329

Query: 522 QKKSLEGILCN 532
           +K+  E     
Sbjct: 330 EKQHEERAKIL 340


>gi|116050020|ref|YP_791166.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585241|gb|ABJ11256.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 864

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/619 (22%), Positives = 256/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 240 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G     L  +  +D 
Sbjct: 300 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRR---LDELLDSDT 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            N    L+                R +  Q     +    + N  G    Y G A DIT+
Sbjct: 357 VNIVKWLEGLPDAETPS-SLVCAFRDSQGQARVGKLSASAIRN--GVASGYRGTAADITD 413

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+   F   +   I
Sbjct: 472 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLETEKFCSRLIDVI 531

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              I        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 532 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP+ G I   EF+ 
Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 651

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL    +  LL   
Sbjct: 827 FLLSRPLDAQGLRDLLARE 845


>gi|310765480|gb|ADP10430.1| sensory box protein [Erwinia sp. Ejp617]
          Length = 946

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/529 (26%), Positives = 243/529 (45%), Gaps = 14/529 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  + +        +LG +     G     L  +       F   L S    + GR + E
Sbjct: 422 VSGEILLINHRAQRLLGGSQRDFIGKRA--LECMTAAMSAYFMQ-LSSAAQRKGGRQRNE 478

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            ++         +      +   +      + IA+D+T+Q+ +   I   A  DNLT +P
Sbjct: 479 RQLTTPSGDRI-ISGSASIVCGKDARHSYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 537

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F   LTT L     D      V+ +D+D +K +ND LG  VGD +L S+  R+  +
Sbjct: 538 NRVLFNQHLTTAL-REDRDAQRLTAVLGLDLDNFKNVNDALGHQVGDALLCSVAVRLRSV 596

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D LAR  G+ F I+L    +S +    A  + ++I  P  +    +++  SIG   
Sbjct: 597 LRDRDTLARNGGDEFSIVLPGLTHSEEAEAVARRLIETIRPPFTIDGHNLSIGLSIGITL 656

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720
             +   +   +L+ A++A+Y AK  G N  E F  +       R +I+ DL  A+   +L
Sbjct: 657 AQNGMTSPDYLLRCADMALYAAKRNGRNRFEYFTKAMGDTAQKRRVIENDLREAITYRQL 716

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI      EI+G EAL++W HP+ G I   EF+ IAEE  +I ++  + L    R
Sbjct: 717 KLYYQPITNNQHREIIGYEALMRWHHPEKGIIMPLEFIPIAEETGLIHSLGAYALYEACR 776

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  SW  +       + +N++     +  L   ++  + ++  +P R+++  +ESV++ N
Sbjct: 777 EAASWPGEQ-----TVAVNLSPLQFKNGALIAVVEGALKESGLAPHRLEVEITESVLLDN 831

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
              +  +L  L+ +G+ + LDDFGT  S LSYL   PFD +K + S +    + R   AI
Sbjct: 832 TLANIDMLRELKALGVHIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMHDSREALAI 891

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +R+I  M+++++  I A+ +      + L   GC   Q      P    
Sbjct: 892 IRAIAGMSRSLDIQITAEGVESNEQFQRLKAEGCTLFQGYFFGRPQPSE 940



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 3/153 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATI 437
             L+G+  +    +     Q      +   L V    D  ++  D+    V         
Sbjct: 235 GKLLGYAKMTRDCSEQQRLQREQQRDQTFRLLVESVNDYAIYMIDLKGLVVNWNAGACRA 294

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G     + G   ++       DR       +       GR +        D    W  +
Sbjct: 295 KGYTGNEIIGKHFSYFYG--EQDRRLNLPEKNLQQATLTGRFEDSGWRYRKDGSAFWAHV 352

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            I  + +  G+++ +  I  D TE ++  + IL
Sbjct: 353 VIDAIRDDGGELIGFAKITRDCTEVREYEQQIL 385



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 3/141 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATI 437
             L+G+  +    +     Q      +   L V    D  ++  D+    V         
Sbjct: 108 GKLLGYAKMTRDCSEQQRLQREQQRDQTFRLLVESVNDYAIYMIDLKGLVVNWNAGACRA 167

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G     + G   ++  +    DR       +       GR +        D    W  +
Sbjct: 168 KGYTGNEIIGK--HFSCFYGEQDRRLNLPEKNLQQATLTGRFEDSGWRYRKDGSAFWAHV 225

Query: 498 RIRPMSNSNGDILRYIGIAND 518
            I  +   +G +L Y  +  D
Sbjct: 226 VIDAIYGDDGKLLGYAKMTRD 246



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V+      +  + +       G     + G  RN+  +    D+   +  L   V    
Sbjct: 20  AVYMLTPEGNVASWSRGAQHAKGYLPAEIVG--RNFSCFYSQQDQMQGQPQLGLQVARDA 77

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           GR   E      D    W  + I  +   +G +L Y  +  D
Sbjct: 78  GRFTTEGWRYRKDGSAFWAHVVIDAIYGDDGKLLGYAKMTRD 119


>gi|229154330|ref|ZP_04282450.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228629154|gb|EEK85861.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 566

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 140/564 (24%), Positives = 254/564 (45%), Gaps = 28/564 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 301 FFTGELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALARCSTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPDEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIGVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
             MGCDY+Q  + A PL    + K
Sbjct: 538 QSMGCDYVQGFYYAKPLSVGELKK 561


>gi|320007035|gb|ADW01885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces flavogriseus ATCC 33331]
          Length = 724

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/581 (23%), Positives = 250/581 (43%), Gaps = 16/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LA 441
                  + A  +  Q + +   R       +   +   D+  + +     +  + G L 
Sbjct: 145 EAIARSALTARSHAEQALHATEARFRAVFKDAAVGIGIADLDGNILEINDTLTRMFGGLE 204

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +      +  W   +H  D  +     +  V   R     E      D    W  + +  
Sbjct: 205 NHVRSHKVNEW---VHPEDSPHVWKYYEELVRGEREHYSVEKPYYRNDGTVLWTNLTVSL 261

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +  G     + +  D TE++     +   A  D LTG+PNR  F +RL   L      
Sbjct: 262 LRDPEGRPEYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALA---PR 318

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGII 620
           + +R  +  +D+D +K IND LG A GD +LV +  R+        +++ARL G+ F  +
Sbjct: 319 EGMRFGLCYLDLDGFKAINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVAL 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   ++ + A  +  ++A P+ L  RE+TV  SIG     S + T +E+L++A++ 
Sbjct: 379 TTGPRTEDEVHELAGRILLALATPVRLDGRELTVRGSIGVVEGPSGERTPAEVLRSADIT 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  GGN        +         +   L  A++  E ++ Y P++ L D  + G 
Sbjct: 439 MYRAKAAGGNRFALADAEADARAITRHGLTTALPTALDRGEFFIEYQPLVHLGDGSVHGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797
           EAL++W HP+ G +    F+ +AE   +I  +  ++LE   R    W+    +  P+ I 
Sbjct: 499 EALVRWCHPQHGVLGPDRFIPLAEHTGLIVPLGRWVLEESVRQANFWKERHTDGGPLRIN 558

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   L    L      ++ ++   P  + L  +ES ++G  +     L +L ++G+ 
Sbjct: 559 VNLSPTQLHHPSLVAETVDVLERSGLEPGALCLEVTESALIGADDDLLKPLRQLAEMGVD 618

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETT 912
           + LDDFGT  S L+ L  +P   +K + S   G          + I+  I+ +A +++  
Sbjct: 619 IALDDFGTGYSNLANLRRLPVSVLKLDRSFTQGMQHHPADPVDLKIVEGIVSLAHSLDLA 678

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  + +      ++L ++GCD  Q  + A P   + I  LL
Sbjct: 679 VTVEGVETGAQAEQLRQIGCDTAQGWYYARPGAPDRIHSLL 719


>gi|209519965|ref|ZP_03268745.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. H160]
 gi|209499616|gb|EDZ99691.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. H160]
          Length = 770

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/617 (23%), Positives = 274/617 (44%), Gaps = 20/617 (3%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
              I    A+  R        A    L  I   +G  V Q  +A     Q +    ER  
Sbjct: 150 AGTILGAFAVYYRTTRRPTPEA-EAVLRDIGNSVGLAVHQDTMA-----QRLAHSEERHR 203

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI- 467
           L V    + +         +   P    +L + S  +   ++  +      D        
Sbjct: 204 LVVDHLSEGIVVQSRTGVVLACNPSAQRMLHVTSQIVGRSMQTVMTRAFGEDGAVVGETN 263

Query: 468 --LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524
             +       +  L     ++  + +  W+   + P+    + +    +   +DI   ++
Sbjct: 264 LPVAQVFATAKPMLGVTIGLQLTNGEVVWITENVVPILRPGDTEPDSVLISFSDIGPVRE 323

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT---VMVIDIDKYKKIND 581
           +   +   A +D+LTG+ NR   ++R+  +    A D         V+ +D+D +KK+ND
Sbjct: 324 AQRQLKFLATRDSLTGLYNRAYLIERMRDLFAPRADDTGDELADVAVLFVDLDGFKKVND 383

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKS 640
             G   GD +L S+  R+   +   D LAR+ G+ F I++ +   ++ ++   A  +   
Sbjct: 384 TAGHEAGDALLCSVAERLSACVGRGDTLARVGGDEFVIVVSAYGGDTDELIGLANRVLDM 443

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA+P  +   E  + ASIG + +       + +++NA+ AMYHAK RG N+ + F     
Sbjct: 444 IAVPFAVAGNEYYLGASIGISLFPEDGQDVATLMRNADSAMYHAKQRGRNNFQFFTAELN 503

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  +    I++ L  A+  +EL LVY PI+       +G EAL++W + + GN+S  EF+
Sbjct: 504 QHLQRRFTIEQSLRRALAANELSLVYQPIVDSHSGRTIGAEALLRWYNSELGNVSPGEFI 563

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I  ++LE     +  WR     P + + +N++ +   D  L E ++  +
Sbjct: 564 PVAEDAGLIVEIGDWVLEHACEQVAQWRRTLA-PHLIVAVNLSPRQFND-GLLERIERCL 621

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++   P+ ++L  +E ++M + +    +L  L  +G+ +++DDFGT  S LSYL   P 
Sbjct: 622 AQSGLEPAALELEITERLLMSDSDTVLPMLSALNAMGVRVSVDDFGTGYSSLSYLKRFPL 681

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G       IAI ++++ MA ++   + A+ +        L  + CD  Q
Sbjct: 682 HNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQAAFLRAIDCDKQQ 741

Query: 937 DSHVASPLGFNSILKLL 953
               + P+G ++  + L
Sbjct: 742 GYLYSRPVGASAYARTL 758


>gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 705

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 144/585 (24%), Positives = 263/585 (44%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L     D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMTHYDALTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++RR+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L D
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQIYSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|229162679|ref|ZP_04290636.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228620561|gb|EEK77430.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 801

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 158/737 (21%), Positives = 315/737 (42%), Gaps = 50/737 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +  H  V  +       +  L  ++   
Sbjct: 85  PTIFKSKWKIYIFIFVLISSAAFNYIYFYLNTHLSHDTVALLRLLYRIPLL-LVAIAASI 143

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P    +    ++ + VL     + +                    +    +   + ++  
Sbjct: 144 PNSLTNNTSYSVVNPVLGKKVLVTF-----------------PYLVVAFLIGFTLKEQTA 186

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402
           + I+        V ++I      +Q                             S+ +  
Sbjct: 187 SSILITGNCITFVFVLIRHSIGRMQNNSLTERLQFFNAQLEEKVAVRTSDLVQKSEALSQ 246

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ++         D ++  D+    +        +LG+A+  + G     L  I   D+ 
Sbjct: 247 KQQKFESLYEYHPDPIFTIDLNGIFLNVNKAGGMLLGVATSELLGNTC--LSIILDEDKH 304

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              + L+         LQ   R +  +   +++ + I P+      I     I  DIT  
Sbjct: 305 KLASALEKVKKQEPTSLQL--RSQYNNGFTYFLYVTIVPIMIDE-QISGSYIIVKDITAF 361

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK  E I   AF D +T I NR  F   L  ++  +   ++    ++ +D+D++K IND 
Sbjct: 362 KKQQEEIKYLAFHDTVTKIGNRAFFHKILKKVIKKAKITES-EFALLYLDLDRFKIINDT 420

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   + +    + +S+ 
Sbjct: 421 LGHSSGDYILEEVAKRFQACLPSHAHLSRIGGDEFTIIIENYTDEDSLFELCNQLFESME 480

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700
            P  + E  +T++ SIG A +  S I ++ +LKNA +AMY   AK      +    ++  
Sbjct: 481 KPFVIHEHTLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDNVIAKK 540

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ I
Sbjct: 541 IERRLRLEKDLPNAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPI 600

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  I  + L++    +  W        + I +N+++K+    +  + + + ++ 
Sbjct: 601 AEETLQIIPIGKWTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISSTLAT 659

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S + L  +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT
Sbjct: 660 TGLPASSLDLELTERIAMMDERETLIKLRTLKNLGVHISIDDFGTGYSSLAYLPLYPIDT 719

Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K     +  + + E  + I+++II +A  +E ++IA+ +  +  +  L +  C +IQ  
Sbjct: 720 LKIPREFITMSETCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVHFLQQNKCQFIQGY 779

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+  ++   LLK+
Sbjct: 780 YYSKPIHADAFSTLLKK 796


>gi|260462306|ref|ZP_05810514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium opportunistum WSM2075]
 gi|259031800|gb|EEW33068.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium opportunistum WSM2075]
          Length = 713

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/590 (23%), Positives = 257/590 (43%), Gaps = 30/590 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++ + +       Q +     R   A+      +  +D     +        +  + + 
Sbjct: 140 VSIYEDITEQRRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNERFLELFKVKAA 199

Query: 444 S--MHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
              +    R+ L  +         D D+     ++    R G++   +R   AD     +
Sbjct: 200 DFPLGTTHRDALERLLELGIYTQIDVDSEVAKTEACR--RAGKIHSAYR-HLADG--RTI 254

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           ++  RPMS        ++   +D+TE++++ E +   A  D LTG+PNR  F +RL   L
Sbjct: 255 LVTRRPMSGG-----GWVATFDDVTERRRTEERMTHLAHHDTLTGLPNRSMFRERLDFAL 309

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSG 614
           + +A        V  +D+D++K IND  G   GD +L  +  R+   L    DI+AR  G
Sbjct: 310 EDAAATP---LAVFSLDLDRFKAINDTWGHPAGDWLLKCVAERLQRCLRNETDIVARFGG 366

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++  +          A  + ++I+ P     R++ V  S+G A +      +  +L
Sbjct: 367 DEFVVMQSNFKGIANAEKMAKRIVEAISKPFRDENRDMHVGISLGIAVFPDDGRDADALL 426

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMD 732
           KNA+ A+Y AK  G N    F        +    ++ DL  A+   EL L + PI+ +  
Sbjct: 427 KNADTALYRAKSEGRNLYRFFEPEMDAMVQTRRALEVDLETALPRQELDLDFQPIMNIAS 486

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            EI G EAL++W  P  G ++  +F+ +AE+  +I  +  + L +       W      P
Sbjct: 487 GEITGAEALMRWHSPARGTVAPDQFIPVAEDTGLIVPLGEWALRKACAAAAGWP-----P 541

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N+++  L  +     + + ++ +  S  +++L  +E+V+M   +     L +LR
Sbjct: 542 GLRIAVNVSAVQLRSDGFARSVISALAFSGVSAGQLELEITETVLMDESKAVLKALRQLR 601

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911
            +GI + LDDFGT  S L YL   P D +K + S +         AI+R+II +   +  
Sbjct: 602 DLGIRIALDDFGTGYSSLGYLRRFPVDKIKIDRSFIRDLGNRDTAAIVRTIIGLGTELGI 661

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            + A+ +  E+ +  L   GC   Q   +  P     I +LLK R P  +
Sbjct: 662 VVTAEGVETEVQLDMLRHNGCTEAQGYLIGVPSKAADIQRLLKSRAPRSQ 711



 Score = 43.0 bits (100), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 11/158 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             ++     + +  +      +    ER S AV      +  +D     +    +   I 
Sbjct: 9   GSIVPERAAEGMERSRRMEDELREQNERFSAAVGNMSHGLCMFDADERMIICNGNYIDIF 68

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFHW 494
            L +  +   I       H  D        +     R+  +       +    AD +   
Sbjct: 69  CLDAKVVRPGISFIDILRHSVDIGIASQSANELYAIRKPYIDQAKPSTYEEALADGRIIR 128

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  R  P+++       ++ I  DITEQ+++ + +   
Sbjct: 129 ISHR--PLASG-----GWVSIYEDITEQRRAEQDLKEQ 159


>gi|228919483|ref|ZP_04082847.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840126|gb|EEM85403.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 569

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           ++ F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KNFFQELWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|167640924|ref|ZP_02399182.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|177652778|ref|ZP_02935151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|254738759|ref|ZP_05196462.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|167511144|gb|EDR86532.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|172081812|gb|EDT66881.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
          Length = 567

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I    N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|17545307|ref|NP_518709.1| hypothetical protein RSc0588 [Ralstonia solanacearum GMI1000]
 gi|17427599|emb|CAD14118.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 903

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/575 (24%), Positives = 257/575 (44%), Gaps = 12/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447
            +   + ++ +    ER  LAV    + +         +   P    IL  G  S     
Sbjct: 325 AVQKAHIARELQESEERYRLAVDNLTEGILVQAADGTILACNPSARRILRAGDQSPVGAS 384

Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            +      +  +  +           +   R  L     +   +    W+   + P+   
Sbjct: 385 HLTLMRRSLREDGSEIPFLERPTRVVLTTGRPLLGLTIGLELINGDVVWVYENVLPIMRP 444

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +   NDI   + + + +   A +D LTG+ NR  FL R+  +LD + TD   
Sbjct: 445 GDATPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGR- 503

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L   
Sbjct: 504 QAAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQV 563

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +  +IA P +    E  + ASIG A        ++ +L+ A+ AMY+A
Sbjct: 564 RSLAEAEQLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPDHGQDAATLLRCADAAMYNA 623

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F          R  +++ L  A+   EL L + PI+      IVG E L+
Sbjct: 624 KQNGRNQHRVFTAQLSQRAQRRFQLEQHLRRALSAQELSLRFQPIVDAASMGIVGAEVLL 683

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   + G +S +EF+ +AE+  +I AI  ++LE+  R    WR     P  FI +N++ 
Sbjct: 684 RWHSAELGEVSPAEFIPVAEDAGLIIAIGEWVLEQACRQAAHWRRTCA-PDFFIAVNLSP 742

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   +   ++++      +++  +E ++M +      +L  L  +G+ +++DD
Sbjct: 743 RQFGDA-LVPMLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +  
Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GCD +Q     +P+   +  + L+ 
Sbjct: 862 LAQAEFLQAAGCDKLQGFLFGAPMSAAAYEERLRR 896



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLP 454
            ++ +    +R    V    D ++        V        +LG  ++  + G   +   
Sbjct: 19  AARPLPLADDRYEALVRQMPDALYIV-ADDIIVFINEAGVRLLGADSASDIVGRELD--A 75

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           ++H +     R   +  + +  G    E  +   D     + I   P+    G       
Sbjct: 76  FVHEDSVQLARQRREWMIEHGAGLPPVEQTLLRCDGTPVDVEILSAPV--QLGWRTAVQV 133

Query: 515 IANDITEQKKSLEG-ILCNAFQDNL 538
           +A DI ++K + +      A    L
Sbjct: 134 VARDIRQRKHAEQALRESEANYRAL 158


>gi|217968967|ref|YP_002354201.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217506294|gb|ACK53305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 814

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/586 (23%), Positives = 237/586 (40%), Gaps = 33/586 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP----DIATILGLASG 443
           + V A     + +          V  +    W  D+                 +LG    
Sbjct: 241 REVTARERMERALQEQESLLRAVVDNTPVEYWARDLDGRCTLQNAMTVAHWGDLLGQRPE 300

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                            R  +               + E+ V   D +       + P+ 
Sbjct: 301 E---------SAKEPAARTEWLETNRRAYAGETVHREVEYEV---DGETRIFQCLVAPIR 348

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G+++   G   DITE+K+    I   AF D LT +PNR+   DRL   L  SA   +
Sbjct: 349 -VGGEVVGIFGFNQDITERKRQEHQIHELAFFDPLTRLPNRRLMFDRLERALGSSARRRH 407

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  +++ID+D +K++ND  G   GD +L+ +  R+G  ++  D  ARL G+ F +IL  
Sbjct: 408 -QGALLLIDLDHFKELNDSHGHEAGDQLLMKVAARLGLSIREGDTAARLGGDEFVVILED 466

Query: 624 ENNSLK----IADFAIAMRKSIAMPINL------LEREITVTASIGFASWTSSKITSSEM 673
             +       I   A  + + +  P  L             +ASIG +++    + ++E+
Sbjct: 467 LEDVADELLHIKAVADRIGRELGRPFQLQRGTAGETISYQCSASIGISAFGEPGVGAAEL 526

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L+ A+ A+Y AK  G N V  F        + R  +  DL  A+   +  L Y   +   
Sbjct: 527 LRRADTALYQAKAAGRNAVSFFDPIMQAAVTARARLHSDLRQAIRGGQFELHYQVQVDAQ 586

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
                G EAL++W HP+ G I    F+ +AEE  +I  +  ++L    R +  W      
Sbjct: 587 -RRPAGAEALVRWRHPEKGLIHPGGFIDLAEETGLIVPLGHWVLATGCRQLALWARHPAT 645

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++++        + ++AL+ +T     R+KL  +ES ++ + E     +  L
Sbjct: 646 AHLRLAVNVSARQFRQPSFADEVRALLEQTGAPADRLKLELTESSLIEDTEAVIERMETL 705

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R +GI   LDDFGT  S L+YL  +P   +K + S +          +I+R+I+ +  ++
Sbjct: 706 RALGIRFALDDFGTGYSSLAYLKRLPLAQLKIDQSFVRDLMSDPNDASIVRTILALGDSL 765

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +  E     L   GC   Q      P+  +     L  
Sbjct: 766 GLAVIAEGVETEAQYAFLAAHGCRAYQGYLFGQPVALDVFEAGLAA 811



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  D  R   A+      ++  D     V       ++L  +   + G           +
Sbjct: 1   MNDDNARLRAAIDTLRVPIYMKDADGRYVYANDLACSLLKRSRDDVVGRCDQ--DLFPPD 58

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             +  R      +   R  +  E+            +   +P+ ++ G  +  IG+A DI
Sbjct: 59  QAEVLRRNDLQVIATARAVVIEEYLSFPDAPVPRCCMNIKQPVVDAGGRPVGVIGLAIDI 118

Query: 520 TEQKKSLEG---------ILCNAFQDNL 538
             +K+              +  A  D L
Sbjct: 119 EARKQQERELVGLKNDYAAILQALPDPL 146



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442
             +   + A     + +       +  +    D ++++DI        TPD   +L    
Sbjct: 112 IGLAIDIEARKQQERELVGLKNDYAAILQALPDPLFEFDIEGRCHGYRTPD-EDLLAAPP 170

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G  R     +   + +     L       R   +  F+V A      W  + + PM
Sbjct: 171 EVFLG--RTVREVLPPEEAEVCLEALREAAAKGRSTGKV-FKVEAPQGT-RWFELSVAPM 226

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +++ G   R+  ++ ++T +++    +   
Sbjct: 227 ASAAGRTQRFNVLSREVTARERMERALQEQ 256


>gi|309780654|ref|ZP_07675396.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA]
 gi|308920577|gb|EFP66232.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA]
          Length = 772

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 253/577 (43%), Gaps = 13/577 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +   + ++ +    ER  LAV    + +         +   P    IL   S S  G  
Sbjct: 192 AVQKAHIARDLRESEERYRLAVDNLTEGIVVQAADGTILACNPSARRILRAGSVSPVGTS 251

Query: 450 R-NWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +      D              +   R  L     +   D    W+   + P+   
Sbjct: 252 HLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENVLPIVRP 311

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDD 562
            +      +   NDI   + + + +   A +D LTG+ NR  F  R+  +++ +    ++
Sbjct: 312 GDDTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANE 371

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L 
Sbjct: 372 ARQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLD 431

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +  +    A  +  SIA P +    E  + ASIG A +      ++ +L+ A+ AMY
Sbjct: 432 NVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMY 491

Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +AK  G N    +          R  ++  L  A+   EL L + PI+     +IVG E 
Sbjct: 492 NAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQPIVDATSMDIVGAEV 551

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W   + G +S +EF+ +AE+  +I  I  ++L +  R    WR    MP  F+ +N+
Sbjct: 552 LLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAHWRA-TCMPEFFVAVNL 610

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +      L   +   +++     S +++  +E ++M +      +L  L  +GI +++
Sbjct: 611 SPRQFG-EGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAVMPMLDALTALGIRISI 669

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +
Sbjct: 670 DDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGV 729

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 + L   GCD +Q      P+   +    L+ 
Sbjct: 730 ETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRR 766


>gi|71281954|ref|YP_271587.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71147694|gb|AAZ28167.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 921

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 211/437 (48%), Gaps = 6/437 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+K++   +   A  D LTG+PNR  F DRL   + LS    + +  V  +D+D +K 
Sbjct: 465 INERKQAEYQLKHLALHDPLTGLPNRLLFQDRLEQAIALSDRHQH-KFAVFFMDLDNFKI 523

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD++L  ++ R+    +  D +ARL G+ F  I+   N       FA  + 
Sbjct: 524 INDTMGHDAGDELLKQVSLRLSCTGRKTDTVARLGGDEFAFIITKVNTIEDAVTFAQRLN 583

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  PI +    I + +SIG   +      S E+L+NA++AMY AK  G N V  F   
Sbjct: 584 SLLKTPIEINGNNINMGSSIGITIYPDDAANSEELLRNADIAMYQAKDDGRNTVRFFTSE 643

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                +   +   DL  ++      L Y P+  +    +VG EALI+W HP+ G I   +
Sbjct: 644 MNARLQRNKEVLTDLAESLTKEHFELYYQPLFTIDQNILVGAEALIRWHHPEKGMIPPDQ 703

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  ++L +  R+I ++ +        + INI+       +L + M  
Sbjct: 704 FIAVAEKSGLINELGDWVLAQACREIKNFLNAGITV-FKVAINISPVQFRRKDLLQHMLM 762

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++   S   I+L  +E  VM N +++   +  L   G  L +DDFGT  S LSYL   
Sbjct: 763 ILAQHDVSAELIELEITEGAVMDNVDQAIETMQALHDAGFQLAMDDFGTGYSSLSYLKRF 822

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   VK + S ++     +   +I  +II M+ ++   ++A+ +  E  +  L    CDY
Sbjct: 823 PIQKVKIDRSFISDLENDDDSKSITTAIIQMSHSLGLHVLAEGVETEEQLHYLQAEKCDY 882

Query: 935 IQDSHVASPLGFNSILK 951
           +Q  +   P+  +  +K
Sbjct: 883 VQGYYTGRPIPASEFIK 899


>gi|241662113|ref|YP_002980473.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ralstonia pickettii 12D]
 gi|240864140|gb|ACS61801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ralstonia pickettii 12D]
          Length = 907

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 253/577 (43%), Gaps = 13/577 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +   + ++ +    ER  LAV    + +         +   P    IL   S S  G  
Sbjct: 327 AVQKAHIARDLRESEERYRLAVDNLTEGIVVQAADGTILACNPSARRILRAGSVSPVGTS 386

Query: 450 R-NWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +      D              +   R  L     +   D    W+   + P+   
Sbjct: 387 HLALMRRSLREDGSEIPVNERPTRVVLATGRPLLGLTVGLELVDGDVVWVHENVLPIVRP 446

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDD 562
            +      +   NDI   + + + +   A +D LTG+ NR  F  R+  +++ +    ++
Sbjct: 447 GDDTPSAVLISFNDIGPARAAQQQLTFLAQRDALTGLYNRAYFSQRMQAVMEQAASQANE 506

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L 
Sbjct: 507 ARQVAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQSDTLARLGGDEFVVLLD 566

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +  +    A  +  SIA P +    E  + ASIG A +      ++ +L+ A+ AMY
Sbjct: 567 NVRSLGEAERLAKRIVHSIAQPFSTSGTEYYLGASIGIALYPEHGNDAATLLRCADAAMY 626

Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +AK  G N    +          R  ++  L  A+   EL L + PI+     +IVG E 
Sbjct: 627 NAKQNGRNQHRVYTARLSQRAQRRFQLEYHLRRALTAGELSLRFQPIVDATSMDIVGAEV 686

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W   + G +S +EF+ +AE+  +I  I  ++L +  R    WR    MP  F+ +N+
Sbjct: 687 LLRWHSTELGEVSPAEFIPVAEDAGLIGDIGEWVLAQACRQAAHWRA-TCMPEFFVAVNL 745

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +      L   +   +++     S +++  +E ++M +      +L  L  +GI +++
Sbjct: 746 SPRQFG-EGLVPTISRCLTEAGLPASALEMEITEGLLMRDTAAVMPMLDALTALGIRISI 804

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +
Sbjct: 805 DDFGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGV 864

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 + L   GCD +Q      P+   +    L+ 
Sbjct: 865 ETLEQAEFLQAAGCDKLQGFLFGPPMTAAAYESRLRR 901



 Score = 40.3 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458
           +    +R    V    D ++        V        + G   +  + G   +   ++H 
Sbjct: 25  LPLADDRYEALVRQMPDALYIV-ADDIIVFVNEAGVRLFGAQTARDIVGHELD--EFVHD 81

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           N     R   +  V +  G    E  +   D     + +   P+    G       +A D
Sbjct: 82  NSMHLARQRREWMVSHGAGLPPVEQTLLRCDGTPVEVEVLSAPV--QLGWRTAIQVVARD 139

Query: 519 ITEQKKSLEG-ILCNAFQDNL 538
           IT++K++ +      A    L
Sbjct: 140 ITQRKQAEQALRESEANYRAL 160


>gi|217972779|ref|YP_002357530.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217497914|gb|ACK46107.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1410

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 258/561 (45%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 850  QKEEQLKLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 907

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 F T + + +  + GR   E      D     M + I  + +  G++  Y+G+ +D
Sbjct: 908  E---TFSTQIRTMLKQQ-GRWANEVEAARGDKSHFHMELTIDAIYDELGELSHYVGVFSD 963

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ +++           +MV+D+D +K+
Sbjct: 964  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLVNREIAH-----ALMVLDLDNFKR 1018

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  +GD +L  +  RI  LL     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1019 INDSLGHQIGDTLLKLVAARIKSLLPKSTSIYRLGGDEFAIVLDKGSDISASAAIANRVI 1078

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            + +     +   ++ +  SIG   +   + +   +L+ A++AMYHAK  GGN  + +   
Sbjct: 1079 EGLKPAFEVSNEQLVLGLSIGIVLFPEDEQSEQALLRKADIAMYHAKSAGGNCYQFYSES 1138

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   +++    + Y P + L   +I G+EAL++ +HP  G I  ++
Sbjct: 1139 LNQHAIRQLEIENLIREGLKDDLFEVYYQPKVDLKRGKIAGMEALVRLNHPVHGLIPPND 1198

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1199 FIPLAEENGLIVEIGEIVLRKACFAAQKWREQGIFSG-RVAVNLSSRQFALPDIQQRIES 1257

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1258 ILRLTKLPACHLELEITEGTVIKQPETAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1317

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1318 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEE 1377

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +       LL+E
Sbjct: 1378 IQGYIFSKAIKETEFTLLLQE 1398



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 12/213 (5%)

Query: 327 IYHGMKGYERAVL--LIPAWILIFIWFIGLWMAITKRLDN--------DIIQPALVGGLV 376
            +   KG   A    L P   +  ++       +   +++          +         
Sbjct: 643 TWITAKGTNSATYTNLSPGHYIFNVFGENPVTGVKGPVNSLNIYISPPWWLSYWAKLIYF 702

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           + V+L+ F +I+ VL      + I    ER  L++ GSGD +WDWDI    +  +     
Sbjct: 703 ITVLLVAFFIIKAVLRKREVQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIWGA 762

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L            +    IH  D++  R  L+          +  +RV+  D+ + W++
Sbjct: 763 -LEFPRDGHRSGKSDEESNIHPMDQERVREALNKHFYGETDHFEAAYRVKGKDDNWVWIL 821

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
            R + +  +   + LR  G   +I++ K+  E 
Sbjct: 822 DRAKIVERDDKDNALRMTGTIKNISQFKQKEEQ 854


>gi|27382691|ref|NP_774220.1| hypothetical protein bll7580 [Bradyrhizobium japonicum USDA 110]
 gi|27355863|dbj|BAC52845.1| bll7580 [Bradyrhizobium japonicum USDA 110]
          Length = 1390

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 133/442 (30%), Positives = 236/442 (53%), Gaps = 7/442 (1%)

Query: 518  DITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D T++K ++ E I   A  D+LT +PNR++F   L   +D +   D+ R  V+ ID+D++
Sbjct: 920  DRTDEKNQADERIEYLASHDSLTDLPNRETFNGLLREAIDAAQRHDH-RFAVLFIDLDRF 978

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IND LG   GD +L+ +  R+   L+  D++ARL G+ F +IL        +   A  
Sbjct: 979  KVINDSLGHEAGDLLLLEVANRLRGALRTSDVVARLGGDEFVVILDQCGEIDDVQRIATG 1038

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  ++A P+ L   E   TASIG A + ++   +  + KNA++AMY AK  G N    F 
Sbjct: 1039 LLAALAEPMELAGHECHTTASIGIAMYPANGSDAQTLTKNADMAMYLAKEDGKNGYRFFS 1098

Query: 697  VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +   +R+ ++  L  A+E  +  L Y P + +   +I G+EAL++W HP  GN+S 
Sbjct: 1099 KEVKTQSIERLSLESALRRALEREQFSLNYQPKVDMETGQITGVEALLRWAHPDLGNVSP 1158

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            ++F+ +AEE  +I  I  ++L       ++W+ +    P+ + +N++ +  +D  L + +
Sbjct: 1159 AQFIPLAEETGLIVPIGRWVLNEACAQAMAWQRRGL-LPLSMAVNLSPRQFVDEHLLQDV 1217

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
               ++ +  SP  ++L  +ES++M N  R+  +L  ++  GI L +DDFGT  S +S + 
Sbjct: 1218 DEALAASGMSPVLLQLEVTESMMMRNVGRALKVLDAIQSRGIRLAIDDFGTGYSSMSLMK 1277

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            + P DT+K + S +       +  AI ++II M K +  T++A+ +        L   GC
Sbjct: 1278 HFPIDTIKIDRSFVRDLPQDSEDQAIAQAIISMGKALGMTVVAEGVENVEQEAFLRTHGC 1337

Query: 933  DYIQDSHVASPLGFNSILKLLK 954
            D +Q   ++ PL    + +LL+
Sbjct: 1338 DEMQGFLISKPLPARQMAELLR 1359


>gi|229593436|ref|YP_002875555.1| putative sensory box/GGDEF family protein [Pseudomonas fluorescens
           SBW25]
 gi|229365302|emb|CAY53651.1| putative sensory box/GGDEF family protein [Pseudomonas fluorescens
           SBW25]
          Length = 975

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/577 (24%), Positives = 268/577 (46%), Gaps = 9/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +         S+ +       S     + + +   D     +      + + G  +
Sbjct: 398 RVTRMLGTRRDISASKALEEQQRLASTVFEAASEGIVILDPDYVLIAVNQAFSRVTGFET 457

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G     LP    + R +F  I  + + +  G  Q E      + + +   +++  +
Sbjct: 458 DDMIGRNVVELPS-SRDARRHFPVIRQALLSH--GTWQGELVETRKNGELYPQWLQLNVV 514

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +   +G   D++ +++S E +      D LTG+ NR  F +RL           
Sbjct: 515 RDVRGKVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLREA-HQRVRQG 573

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ I++D++K +ND LG  V D +L  + RR+   L   D +ARLSG+ F ++  
Sbjct: 574 GRSLALLHINLDRFKLLNDSLGHEVADQLLQKMARRLINALPEADTIARLSGDEFAVLFD 633

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  N   +A  A  +   + +P+ +   E+ V+AS+G +    +    S ++  + +AM 
Sbjct: 634 AYGNLSSLARVATRLLAKLRVPVTVEGHELVVSASMGVSLLPDNAREISALVSQSNMAMQ 693

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAKH GGN+ + +  S   S   R+ ++  L  A+E  +L + Y P + L   ++   EA
Sbjct: 694 HAKHLGGNNFQFYTDSLQASTLERLQLENHLRKAIEERQLSVFYQPKLCLATGKLNAAEA 753

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W+HP+WG +   +F+ +AEE  +I  +  F+L         W+ Q    PI + +N+
Sbjct: 754 LIRWEHPQWGMVPPGDFIGLAEETGLIVPLGEFVLREACWQACEWQRQGLA-PIRVSVNL 812

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L   ++ ++ +T   P  ++L  +ES ++ + E       +LR +G+ L +
Sbjct: 813 SVHQLRQGKLVSLVRQVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAI 872

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  IP D VK + + + G  +  +  AI R+II MA  +   ++A+ +
Sbjct: 873 DDFGTGYSSLSYLKRIPVDYVKIDQTFIRGLGQGREDAAITRAIIAMAHGLALKVVAEGV 932

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  +  L    CD +Q   ++ P+    +  LL++
Sbjct: 933 EDQQQLDFLRGERCDEVQGYLISRPMQAEGLADLLRK 969



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 129/383 (33%), Gaps = 37/383 (9%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMV-NRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243
             +  LY+G ++    +L   L   +++ N    L+ +  + W++           +   
Sbjct: 46  ERTRLLYQGSLLPTLLMLVNGLVCAWLLWNPKQYLLDSIWLVWLLALVAMRVIQVAAFDS 105

Query: 244 NLPSG-ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            +PS     +WR    +  + S +      +          ++  + +  +     +S  
Sbjct: 106 AMPSRQAQPVWRRMFMLGSAVSGLTLATAAIAL---VPADSFMQQAWVFGLIGAATLSAS 162

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHG----MKGYERAVLLIPAWILIFIWFI--GLWM 356
                +  A ++ A   L  +   ++       +G+    L++ A + +  W +   +  
Sbjct: 163 VAYAVSVPAFLSFALPCLVPSIIYLFWSGDPQQRGWGVLGLILLASLSLVAWQVNRLIQR 222

Query: 357 AITKRLDNDIIQPALVG------------------------GLVLIVILIGFTVIQHVLA 392
            + +R  N  +   L                           L    + +   V Q    
Sbjct: 223 GLLRRFQNQALIEHLQQAQQRSEQLNQELVREVEQRRQVEQELREAQVGLQDRVAQRSQE 282

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S  +     R ++A+  S   +WDW++  D V  T  +  + GL    +   + + 
Sbjct: 283 LDAASLALNKSEARLAMALQASELGLWDWNLQTDEVHHT-QLKELFGLEPEYVTAMLGHL 341

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511
            P +H  D    +  L   +  R    Q E+RVR  D  + W+  R R +    +G + R
Sbjct: 342 KPRLHPEDLPLLKRALVEHLKGRSEDYQVEYRVRHGDGHWVWIEDRGRAVERAPSGRVTR 401

Query: 512 YIGIANDITEQKKSLEGILCNAF 534
            +G   DI+  K   E     + 
Sbjct: 402 MLGTRRDISASKALEEQQRLAST 424


>gi|77918291|ref|YP_356106.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544374|gb|ABA87936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pelobacter carbinolicus DSM 2380]
          Length = 947

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/646 (22%), Positives = 275/646 (42%), Gaps = 23/646 (3%)

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
           V+  +Y   Y  M+ +  A + +P           +    +  + + ++   L G   L 
Sbjct: 303 VVSTSYMFDYRQMQRFGLASVDLPP------GSTIVGRPPSFWMRHRLLITVLSGMAGLQ 356

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +L G+ + +         + +     +    +  + D V   +         P    + 
Sbjct: 357 -LLAGWFLWRLSGTRRGTQKYLHEKEAQFKTVIRATHDAVVVINERGLVTLFNPAAEELF 415

Query: 439 GLASGSMHGPIRNWLPYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           G +S  M G     L  +         R +  +   +           E        +  
Sbjct: 416 GWSSAEMLGCN---LDILMPEGYRDQHRHDVASFFSTGEPSEAVGRSLELLAVHRSGKEF 472

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            + + +       G     + I  DI+ Q++    I   A+ D+LTG+PNR  F DR   
Sbjct: 473 PIELSLSV--GKYGHERFVLAILRDISSQRQVEREIKQLAYYDSLTGLPNRALFEDRFRR 530

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +L  +     +   ++ I +D    IND  G   GD +L  + +R+  + +    + R  
Sbjct: 531 VLTTADRAGKM-AALLFIGVDNLNSINDTHGHTYGDKLLKVIGQRLVAVAQNGATVVRWE 589

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G++F ++L   +++      A  + +SIA P  + ++   VTASIG A +        ++
Sbjct: 590 GDKFVVLLPGLSDAETADTVARQILQSIAEPCEVDDQSFFVTASIGGAVYPQHGADGDKL 649

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731
           LKNA++AMY +K  G N   +F     R       ++ +L LA+   E +L Y P +   
Sbjct: 650 LKNADMAMYASKELGRNTYCTFTEEMNRRVLERSGLEHNLRLALAREEFFLAYQPQVDQA 709

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +++G EAL++W H + G IS  +F+ +AEE  +I  I  ++L+       +W+  A  
Sbjct: 710 TGKVLGSEALLRWRHAEKGMISPGQFIPLAEESGLILPIGHWVLQTACAQNKAWQ-LAGY 768

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           PP+ I +N++++     +  + +  ++  T   P  ++L  +ES++M + + +   L  L
Sbjct: 769 PPMRIAVNLSARQFQQPDFFDQVAQVLKDTELDPRYLELELTESLLMADADVAVETLRAL 828

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R +G+ + +DDFGT  S LSYL   P D +K     +          AI+ ++I MA  +
Sbjct: 829 RDLGVGIAIDDFGTGYSSLSYLKTFPIDRIKIAQEFVLDITRDPGDAAIVETVIAMAHGL 888

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              I+A+ +  E  ++ L    C  +Q  +   P+   + ++ L E
Sbjct: 889 GLDIVAEGVETEAQLEFLRARRCQVMQGYYFGRPMPAENFIEYLSE 934


>gi|326938344|gb|AEA14240.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 567

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 360 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563


>gi|30260782|ref|NP_843159.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47525907|ref|YP_017256.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183620|ref|YP_026872.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|165872950|ref|ZP_02217573.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167635210|ref|ZP_02393526.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170689008|ref|ZP_02880208.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708489|ref|ZP_02898931.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|190568528|ref|ZP_03021434.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816502|ref|YP_002816511.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229604486|ref|YP_002865226.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254684295|ref|ZP_05148155.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254742030|ref|ZP_05199717.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|254754984|ref|ZP_05207018.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762284|ref|ZP_05214128.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|30254231|gb|AAP24645.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47501055|gb|AAT29731.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177547|gb|AAT52923.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|164711304|gb|EDR16858.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167529469|gb|EDR92220.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170126610|gb|EDS95495.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170666993|gb|EDT17756.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|190560322|gb|EDV14301.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006073|gb|ACP15816.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229268894|gb|ACQ50531.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 567

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I    N  G+  ++I I NDI+
Sbjct: 69  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 127 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 301 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 360 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 418 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 538 KSMGCDYVQGFYYAKPLSVAELKEKL 563


>gi|157960586|ref|YP_001500620.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845586|gb|ABV86085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 839

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 145/570 (25%), Positives = 260/570 (45%), Gaps = 12/570 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IR 450
                 +      E  S     S + V   D+    +      + I G     + G   R
Sbjct: 272 RNIASHKAAKDQLELASRVFENSVEGVIITDVDGAIIDAHGAYSEITGYTKEELLGQNPR 331

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                 H   +  F  + +  +   +G+   E   R         ++ I  + +    I 
Sbjct: 332 VLNSGRHK--KAFFTEMWNDLLS--KGKWHGEIWNRRKSGAIFPQMLNISAVYDIEHQIR 387

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + NDI+ QK+S   +   AF D LT +PNR +    L   L  ++   N R  ++ 
Sbjct: 388 FFVAVFNDISAQKQSEAELAKVAFHDPLTKLPNRMALNTGLEQELKQAS-HSNTRLGLVY 446

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K+IN+  G  VGD+VL+ ++RR  + L      ARL  + F ++L + +++  +
Sbjct: 447 IDVDLFKQINESYGHPVGDEVLLEVSRRFSQSLGDLVTAARLGSDEFALLLPNIDSNDAL 506

Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                 +RK    P  L E  +  +T+S+G A +       S +L NAE+AM+ AK  G 
Sbjct: 507 LQQINNLRKVFDQPFILGEHGQARLTSSMGVAIYPDDAQDPSGLLVNAEIAMHRAKQDGR 566

Query: 690 NHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+   +    +     ++ ++  L  A+E + LYLVY P I  +  ++VG EAL++WD P
Sbjct: 567 NNCAFYTESLNQESVAKLKLQSALHDAIELNALYLVYQPKISFVTGDVVGFEALLRWDDP 626

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +G +S + F+ +AE++ +I+ I  ++L+R       WR+Q       I +N+A + +  
Sbjct: 627 AFGAVSPAVFIPLAEKIGLIQDIGRWVLKRACEQGQRWREQGVNFG-RIAVNVAGQQIQR 685

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +   + +   + +T    S ++L  +ES +M  PE     L +L  +G+ L++DDFGT  
Sbjct: 686 SSFVDEVAETLKQTGLPASCLELEVTESYMMSEPELVSQDLAKLGLMGVELSIDDFGTGY 745

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P   +K + S + G        AI ++II M   +   ++A+ +  +    
Sbjct: 746 SSLSYLKKLPIHKLKIDQSFIAGLPLDTHNTAIAKAIIAMGHALNLKVVAEGVETQAQAD 805

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L    CD+ Q    + P     +   L +
Sbjct: 806 FLKDNLCDHAQGYFYSKPKLVEELTDFLHK 835



 Score = 38.4 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 37/146 (25%), Gaps = 6/146 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDI----VWDWDIVRDRVTTTPDIATILGLASGS 444
           +       +       +   L++    D     VW  D     +     +          
Sbjct: 142 YRQFKRDQNSKRDVSHQASQLSLQAFIDCMKEHVWVKDTSGRYMMVNHSVELAWNRPREQ 201

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +     +           +F       +         E       +   W+     P  N
Sbjct: 202 ILNFTDD--ELFEPRLAKHFIASDIESIRQGVQVSAGECEGLDIGDVDSWLETTKVPAIN 259

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
            +G++   IGI+ +I   K + + + 
Sbjct: 260 DDGELTGVIGISRNIASHKAAKDQLE 285


>gi|146293552|ref|YP_001183976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145565242|gb|ABP76177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1438

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 134/561 (23%), Positives = 263/561 (46%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 878  QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 935

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                NF + + + +  + GR   E      DN+   M + I  + +  G++  Y+G+ +D
Sbjct: 936  E---NFSSQIRTMLKQQ-GRWANEVEAVRGDNRHFHMELTIDAIYDELGELSHYVGVFSD 991

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ ++     +  +  ++MV+D+D +K+
Sbjct: 992  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLV-----NKEIAHSLMVLDLDNFKR 1046

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD +L  ++ R+  +L     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1047 INDSLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVI 1106

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++  M  N+ E ++ +  SIG   +   +     +L+ A++AMYHAK  GGN  + +   
Sbjct: 1107 EAFKMSFNINEEQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1166

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   ++     + Y P I L    + G+EAL++ +HP  G I   E
Sbjct: 1167 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKIDLKRGRVAGMEALVRLNHPVQGLIPPKE 1226

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1227 FIPLAEESGLIVEIGEIVLRKACFAAQKWREQGLFNG-RVAVNLSSRQFALPDIQQRIES 1285

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1286 ILRLTKLPACHLELEITEGTVIKQPEAAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1345

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1346 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1405

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +  +    LL+ 
Sbjct: 1406 IQGYIFSKAIKESEFTLLLQA 1426



 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +   A     +L+V+ +       +L      + I    ER  L++ GSGD +WDWD
Sbjct: 718 PWWLSTEAKSLYFILLVVSLLIVTKT-ILRRRETQRQIALSEERLKLSLWGSGDEMWDWD 776

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  +    + L            N    IH  D++  R  L+          +  
Sbjct: 777 IETGNIFRSNIWGS-LEFPRDGHRSGKNNEESNIHPMDQERVREALNKHFYGETDHFEAA 835

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           +RV+  D  + W++ R + +  +   + LR  G   +I++ K+  E + 
Sbjct: 836 YRVKGKDENWVWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 884


>gi|107101499|ref|ZP_01365417.1| hypothetical protein PaerPA_01002542 [Pseudomonas aeruginosa PACS2]
          Length = 844

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/619 (21%), Positives = 258/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 220 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 279

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   +    +  +  
Sbjct: 280 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 337

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  + +           L   FR   +  Q     +    + N  G    Y G A DIT+
Sbjct: 338 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 393

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 394 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 451

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+I  F   +   I
Sbjct: 452 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 511

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              +        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 512 NREVAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 571

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP+ G I   EF+ 
Sbjct: 572 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPRRGLIGPDEFIG 631

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 632 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 686

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 687 LARLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 746

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 747 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 806

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL    +  LL   
Sbjct: 807 FLLSRPLDAQGLRDLLARE 825


>gi|254240505|ref|ZP_04933827.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193883|gb|EAZ57946.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 864

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 137/619 (22%), Positives = 257/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 240 LAWVSSRPGSTMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 299

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   +    +  +  
Sbjct: 300 AGEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 357

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  + +           L   FR   +  Q     +    + N  G    Y G A DIT+
Sbjct: 358 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARIGKLSASAIRN--GVASGYRGTAADITD 413

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 414 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AEKAGKSPVAVLMLDLDRFKPIND 471

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+I  F   +   I
Sbjct: 472 QYGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLEIEKFCSRLIDVI 531

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              I        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 532 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 591

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP  G I   EF+ 
Sbjct: 592 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPHRGLIGPDEFIG 651

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 652 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 707 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 766

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 767 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 826

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL    +  LL   
Sbjct: 827 FLLSRPLDAQGLRDLLARE 845


>gi|296389513|ref|ZP_06878988.1| putative sensory box protein [Pseudomonas aeruginosa PAb1]
          Length = 844

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 136/619 (21%), Positives = 256/619 (41%), Gaps = 17/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+        L       L   ++   L+  L    +L    V +        +Q + 
Sbjct: 220 LAWVSSRPGSAMLRETALPLLGIFVLAAGLLFWLSRSAVLNARAVDRQQKVLKRSNQALL 279

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER       + D +W+ D        +     + G    +  G   +    +  +  
Sbjct: 280 ASEERFKSIAEAASDWIWEVDGHFVFTYLSVRFRDVTGYQPEAWIGRRLD--ELLDSDTV 337

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  + +           L   FR   +  Q     +    + N  G    Y G A DIT+
Sbjct: 338 NIVKWLEGLPDAGAPSSLVCAFR--DSQGQARVGKLSASAIRN--GVASGYRGTAADITD 393

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   I   +  D LTG+PNR      L  +L  +         V+++D+D++K IND
Sbjct: 394 EVEAHAKIQHLSLHDALTGLPNRNKLFQFLERLL--AERAGKSPVAVLMLDLDRFKPIND 451

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL ++  R+    +  D++ARL G+ F ++    ++ L+   F   +   I
Sbjct: 452 QHGHPAGDAVLYAIAERLRASTRDQDMVARLGGDEFVVVSTHVSSKLETEKFCSRLIDVI 511

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              I        V ASIG A           +L+ A++AMY AK  G N    +  +   
Sbjct: 512 NREIAYEGHSFHVGASIGVALAPEHGGDPRGLLRCADVAMYEAKAAGRNTWRFYLEAMDS 571

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++ + + +L  A++N E  L Y P     ++ I   EALI+W+HP  G I   EF+ 
Sbjct: 572 HLAEKKLRETELRAALQNGEFELYYQPRFLAQEQTIASAEALIRWNHPHRGLIGPDEFIG 631

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  ++L        SW  +     + + +N++    +  ++   ++  + 
Sbjct: 632 LAEESDLIVQIGNWVLREACATAASWPGE-----VMVSVNVSPAQFMTGDIVWQVREALR 686

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  R++L  +E+V++ + + +   +  L+++G+ L +DDFGT  S L YL   PFD
Sbjct: 687 LAHLDARRLELEVTENVMLNDVDGALRTMTALKELGVRLNMDDFGTGYSSLGYLRTYPFD 746

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K +   +    +  +  +I+++II +   +   + A+ +  E  +  L    C  +Q 
Sbjct: 747 SIKIDKRFVASMEKTGRDRSIVQAIINLGNALNLRVTAEGVETEGQMHILRDEQCHELQG 806

Query: 938 SHVASPLGFNSILKLLKER 956
             ++ PL    +  LL   
Sbjct: 807 FLLSRPLDAQGLRDLLARE 825


>gi|308050336|ref|YP_003913902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ferrimonas balearica DSM 9799]
 gi|307632526|gb|ADN76828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ferrimonas balearica DSM 9799]
          Length = 1445

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 138/573 (24%), Positives = 262/573 (45%), Gaps = 27/573 (4%)

Query: 399  GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             I    ER +L   A+    + ++  D     +        I G            +   
Sbjct: 880  SIKEAEERLNLFARALRNISEGMFILDDDMRYLEVNEACLEITGFEKEHFVNETLKF--- 936

Query: 456  IHINDRDNFRTILDS---FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                  D +          +  ++GR   E  +  ++ +   + + +  +  S      Y
Sbjct: 937  ------DRYPQAYTDDIIRIVQQQGRWNGELELSRSNGRLIQIELTLDQIKESGTHNHFY 990

Query: 513  IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            +G+ +DIT +K++   +      D LTG+PNR      L +++        +   +++ D
Sbjct: 991  VGVFSDITHRKQAESELRRLTNNDILTGLPNRSYLQISLDSLVRR-----QVPLCLLIFD 1045

Query: 573  IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            +D +KK+ND LG   GD +L  +  R+   L     L RL G+ F +I   +        
Sbjct: 1046 LDNFKKVNDSLGHGAGDALLCHVANRVRNHLPEQASLYRLGGDEFAVIFDGDQAINYSTK 1105

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  + + P  L + E+ V +SIG  ++    +    +L+ A+LAMYHAK +GG   
Sbjct: 1106 LAQEILAAFSQPFQLEQGEVVVNSSIGIVTFPDDDVDRQALLRKADLAMYHAKGQGGQCY 1165

Query: 693  ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + F  S  ++    +  +  +  A++++   + Y P + L  ++I G+EAL++ +HP  G
Sbjct: 1166 QFFNESLNQAAMERLDTENLIRQALKDNHFEVYYQPKVDLPTKQIKGMEALVRLNHPTRG 1225

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             IS  EF+ +AEE  +I  I   +L++       WR Q  +    + +N++S+  +  +L
Sbjct: 1226 LISPGEFIPLAEETGLIVEIGEHVLKQACFAAEKWR-QMGLLKGRVAVNLSSQQFILPDL 1284

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            CE ++ ++  T      ++L  +E  V+  PE++   +  L ++GI L LDDFGT  S L
Sbjct: 1285 CERIERILKLTRLPADWLELEITEGTVIQQPEQAIATMRTLNQLGIHLALDDFGTGYSSL 1344

Query: 871  SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            SYL   P +T+K + S +     T K   +  SII +A+N+E +++A+ +  +  +  L 
Sbjct: 1345 SYLKRFPINTLKIDKSFVDDIAITAKDRMMAASIITIARNMELSVVAEGVEEKAQLSVLE 1404

Query: 929  RMGCDYIQDSHVASPLGFNSILKLL--KERFPL 959
             + CD +Q    + P+       L+  + + P+
Sbjct: 1405 ELRCDMVQGYLFSRPIPEMEFESLMFSQSKRPI 1437



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 5/173 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              + + A +     I+ L+   V +  L        I    ER  L++ GSGD +WDWD
Sbjct: 725 PWWLSRYAKLAYGAAILALV-LVVYREFLRRQRVQARIAQSEERLKLSLWGSGDEMWDWD 783

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +   R+  +     IL                 IH +D +    +L           +  
Sbjct: 784 MEAGRIYRSNIWG-ILEFPRDGKRSSGAE--SNIHPDDVERVNQLLSRHFSGDSDHFEAT 840

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +RV++    + W++ R + +  +      R  G   DI+  K++ E +   A 
Sbjct: 841 YRVKSKLGDWVWILDRAKIVERDDQDRPTRMTGTIKDISSIKEAEERLNLFAR 893


>gi|228951120|ref|ZP_04113236.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229068313|ref|ZP_04201616.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|229077940|ref|ZP_04210550.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|229177154|ref|ZP_04304543.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228606335|gb|EEK63767.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228705398|gb|EEL57774.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228714774|gb|EEL66646.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228808530|gb|EEM55033.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 569

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    +   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVVLQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS +EF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 ISPNEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 FSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|207722273|ref|YP_002252709.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum
            MolK2]
 gi|206587450|emb|CAQ18032.1| signal transduction protein eal-ggdef domains [Ralstonia solanacearum
            MolK2]
          Length = 1178

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 144/584 (24%), Positives = 261/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D        V   P    +
Sbjct: 604  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGISVADALQPDLPLVYVNPGFERM 659

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  RT L          ++   R    D      
Sbjct: 660  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRTALRDASE-----IRVLLRNFRKDGHPFLN 714

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 715  NFLLSPVRDSRGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQAV 774

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR SG+
Sbjct: 775  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFSGD 833

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 834  VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGTDSETLVR 888

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY+AK  G N +E F        S R+ ++  +  A+E+ +  L+Y P I     
Sbjct: 889  HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEHGQFRLLYQPQIDTRTG 948

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 949  RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLSEAAQQRAAWHARGLGED 1008

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL  +++  LL+ 
Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172



 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +  +A     + +    ER       + D ++DWDI        
Sbjct: 333 QGGARDELSLLERTFNEMRMAIQRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392

Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG  +               +  ++H  D + F   L + +   R    +  RV
Sbjct: 393 ASLHRLLGSDALLTSGDEDGVSRTLTFQQFVHPEDMEVFGRGLRAALHSDRNAWHHVCRV 452

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  +R +G   DI+++      + 
Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 497



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  + G+  G        
Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSTGMYVLTGMPPG-PPPSFAQ 546

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 547 QAQFFSADSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 606 LFGTMQDITERRESDEQLRLL 626


>gi|186473096|ref|YP_001860438.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184195428|gb|ACC73392.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 812

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 132/621 (21%), Positives = 263/621 (42%), Gaps = 19/621 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSD 403
                                I      G +V +V   +  T    +L        + S+
Sbjct: 180 ASFRGTCTTTAGQPKWWDSQLIPVKDHGGKVVAVVCASLDITNQTQLLQQLRAKSELMSE 239

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E     V  S    +++         T   + + GL          +W   +   DR  
Sbjct: 240 MEAHVQLVFFSYSANFEY-----FHYITAGSSNVFGLEPEEFMRNPNSWRELVVPEDRAA 294

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +  +   +       + ++R+R AD    W+     P+   NGD+LR +GI  D+T ++
Sbjct: 295 LQAEMTRIMTESTEG-RAQYRIRKADGSVRWVRSTGYPVIGDNGDVLRIVGITEDVTAEQ 353

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +  +   A+ D+LTG+ NR + L  + +    S         +M +D+D++K +ND L
Sbjct: 354 ERIAELDRLAYTDSLTGLANRAALLREIESRCAASK-----PFGLMFVDLDRFKVLNDTL 408

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    D +L  +   I   L     +ARL G+ F +++ S  +   +   A A+   ++ 
Sbjct: 409 GHLAADHLLRHVGGIIRRSLPDDAYIARLGGDEFAVLIGSVVDQPGLEAQAKALLGGLSE 468

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-FRS 702
                     +TASIG + +         +L +A++AMY AK  G N  +     +    
Sbjct: 469 NRLEGLAGAFITASIGISIYPEHGSGHDALLSSADVAMYAAKKTGRNGYQFAGKEAARTI 528

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++ D+  A+  ++ +L +  I       + G EALI+W HP+ G IS  +F+ + E
Sbjct: 529 GDFELERDVPEALATNQFFLHFQTIHEPHSLAVHGAEALIRWQHPRRGRISPGDFIPLLE 588

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   ++ + +++L+   R + +WR       + + +N++++ L   ++ + +   + +  
Sbjct: 589 ETGFVEDVGVWVLDNALRQLAAWRQA-GAMNLGVSVNVSARQLGSEQIVQQVDRALKRHG 647

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P ++++  +E+ +M NP+++R  +  L+++G  + +DDFGT  S L YL      T+K
Sbjct: 648 IPPGKLEIELTETALMKNPKQARTSIVELKRLGARIAIDDFGTGYSSLMYLADFEPHTLK 707

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +    +          I+  II +A  +   +IA+ +     +  L R+ CDY+Q   +
Sbjct: 708 IDRHFTSKIEHDPTTQTIVEGIIDLAHKLGIQVIAEGVEQTAQLDILRRVNCDYVQGYLL 767

Query: 941 ASPLGFNSILKLLKERFPLVK 961
           + P        L+    P  +
Sbjct: 768 SRPQAPE---GLMTRAQPGAR 785



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 66/208 (31%), Gaps = 6/208 (2%)

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
             +  G     R V L    I +         ++  ++       A     V I   +G 
Sbjct: 28  LALLLGAWSSRRPVGLTGFAISVATGIGAGTASVALQMALRGSVSAPFSTQVAIGATVGA 87

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATIL-GLAS 442
             +          Q   +     + + +  S D V   D+    +      AT++   + 
Sbjct: 88  IAMIATRRRFAAQQARHAAAMALASSFLDASRDCVKLLDLQGQMLRINDYGATLMEASSP 147

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   +WL +    DRD   T   + +       +          Q  W   ++ P+
Sbjct: 148 VQLAG--ADWLGFWKGGDRDAATTAFRNALNGTPASFRGTC--TTTAGQPKWWDSQLIPV 203

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  G ++  +  + DIT Q + L+ + 
Sbjct: 204 KDHGGKVVAVVCASLDITNQTQLLQQLR 231


>gi|120609841|ref|YP_969519.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120588305|gb|ABM31745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 850

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 147/574 (25%), Positives = 263/574 (45%), Gaps = 22/574 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-- 453
               +     R       S D  W+ D     V     +   LG+A     G  R  L  
Sbjct: 281 LQSELRLSEARFRSLCDLSSDWYWEQDAEHRFVHFNQGLNG-LGIAVDEAVGRTRWELGA 339

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           P +   D           +  R+     E +  AAD +  W+ +   P+ +++G  L Y 
Sbjct: 340 PNLSAEDW----AEHRRVLAARQPFRDLELQRTAADGRVSWVSVSGIPVFSADGAFLGYR 395

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+  DITE+K+    I   AF D LTG+PNR+   DRL   +  +A  +     ++ +D+
Sbjct: 396 GVGRDITERKRVDAEIERLAFFDPLTGLPNRRLLTDRLRRAIGTAAR-ERSHGALLFLDL 454

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSL 628
           D +K +ND LG  +GD +LV   +R+       D ++R  G+ F ++             
Sbjct: 455 DNFKDLNDTLGHDMGDRLLVQAAQRLLACAGAGDTVSRFGGDEFVVLAEGLPGDMHRARA 514

Query: 629 KIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSE---MLKNAELAMYHA 684
             A  A  +  ++  P  +        T SIG A +       +    +LK+A+LAMY A
Sbjct: 515 DAAVLANRITAALGRPYAVGGMGHHHSTPSIGLALFGGGTGDGAGVDDLLKHADLAMYQA 574

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N +  F  S  ++      ++ +L LA+E+ EL L Y P++   D  ++G EAL+
Sbjct: 575 KAAGRNTIRFFDPSMLQAVLARAALESELRLALESDELLLHYQPLVNG-DGSMLGAEALV 633

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +   EF+  AE+  +I A+  ++LER    +++W   A    + + +N++ 
Sbjct: 634 RWRHPQRGLVMPGEFIPAAEQGGLIVALGQWVLERACAQLVAWSRSAATAQLVLAVNVSV 693

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     +  + +   + ++   P  +K+  +ES++M + E     + +LR  G+   +DD
Sbjct: 694 RQFRQPDFVDQLLQTLRRSGAQPRLLKIELTESLLMADVEDVIARMEQLRAHGVGFAIDD 753

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +    +     AI+R+I+ +A++++  ++A+ +  
Sbjct: 754 FGTGYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIVRTILALARSLDLEVVAEGVET 813

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +K L R GC   Q      P     + + L+
Sbjct: 814 TGQLKFLQRHGCKAFQGHLFGRPAPAAVLERALR 847


>gi|30018813|ref|NP_830444.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|296501388|ref|YP_003663088.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|29894355|gb|AAP07645.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|296322440|gb|ADH05368.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 567

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 360 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563


>gi|327481276|gb|AEA84586.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 829

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 139/566 (24%), Positives = 269/566 (47%), Gaps = 20/566 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    ER       + D +W+ D        +     I G       G    
Sbjct: 273 RLASSRSALAESEERFRDVAEAASDWIWETDEQARLTFLSNRFRQITGHEPAQWLGRP-- 330

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L  + I D    +  L++        L+  +R  AAD    +  +  R +   +G +L 
Sbjct: 331 LLELL-ITDSAALQNWLEA---PHSAPLRSSYR--AADGCERYCRLAARTIQ-HDGKLLG 383

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G A+D+TE+ ++   +   +  D LTG+PNR    D L    +L++       T++ I
Sbjct: 384 YRGTASDVTEETRAQARVQYLSQHDALTGLPNRSRLRDYLEQ--NLASLRSGSTLTLLYI 441

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG A GD+VL+ +  R+ E  +  D++ARL G+ F ++L        I 
Sbjct: 442 DLDRFKPVNDTLGHAAGDEVLIGVASRLRERTRDGDLVARLGGDEFVVVLHRMGEDNDID 501

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +  +++ P    +++I++ ASIG A   +    ++E+L+ A++A+Y AK  G   
Sbjct: 502 RLCNRIIDALSAPFIYEDQQISIGASIGVALAPTDANQANELLRCADIALYQAKDAGRGT 561

Query: 692 VESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             ++     +     ++ +  L  A+   +L + Y P  +     I+G EAL++WDHP+ 
Sbjct: 562 WRAYGREMDQRLHERLRREEELRVAITEQQLEVHYQPRYQSQGLYIIGAEALVRWDHPQR 621

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +F+ +AEE  +I  +  ++L +  +    W          + +N++   L D+ 
Sbjct: 622 GMLLPEQFIPLAEETGLIIPLGRWVLRQACQQAARWP-----GDTVVSVNLSPLQLHDDR 676

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +   ++    + +R++L  +ES ++   + +  LL R++ +G+ L +DDFGT  S 
Sbjct: 677 LLEEITQALADNGLAGNRLELEVTESALLRETQNTLELLKRIKALGVRLAVDDFGTGYSS 736

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L + PFD +K + S + G  +  +  +I+R++I + + +   + A+ +  E  ++ L
Sbjct: 737 LTTLRHYPFDVIKIDNSFVAGIGQSIEDHSIVRALIELGRGLRMRVTAEGVETEEQLRLL 796

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
           T  GC  +Q  H++ PL    +  +L
Sbjct: 797 TDDGCTEVQGFHMSHPLPAQDLWTML 822


>gi|300693249|ref|YP_003749222.1| signal transduction eal-ggdef domains transmembrane protein
            [Ralstonia solanacearum PSI07]
 gi|299075286|emb|CBJ34576.1| putative signal transduction eal-ggdef domains transmembrane protein
            [Ralstonia solanacearum PSI07]
          Length = 1178

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 142/584 (24%), Positives = 258/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD---IVRDRVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D        V   P    +
Sbjct: 604  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADALQPDLPLVYVNPGFERM 659

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  R  L          ++   R    D      
Sbjct: 660  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRAALRDASE-----IRVLLRNFRKDGHSFLN 714

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 715  NFLLSPVRDSQGAVTHYVGIQDDVTEQEMTRARLAQHATADPLTGLPNRTLLADRVQQAV 774

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 775  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGD 833

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 834  VFALVISHAGSHGVDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGSNSETLVR 888

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY+AK  G N +E F        S R+ ++  +  A+E  +  L+Y P I     
Sbjct: 889  HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDSRTG 948

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 949  RICGLEALIRWIHPTRGQLPPAAFIPVAEESGLVVEIGNWVLAEAAQQRAAWHARGLGED 1008

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL  +++  LL+ 
Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPDAVTALLER 1172



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +  +A     + +    ER       + D ++DWDI        
Sbjct: 333 QGGARDELSLLERTFNEMRMAILRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392

Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG  +               +  ++H  D + F   L + +   R    +  RV
Sbjct: 393 ASLHRLLGSDALLASGDEDGVSRTLTFQQFVHPEDMEAFGWGLRAALHSDRNAWHHVCRV 452

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  +R +G   DI+++      + 
Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAMRMVGGVTDISQRSAMEADLR 497



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  + G+  G        
Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSSGMYVLTGVPPG-PPPSFAQ 546

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 547 QAQFFTGDSYNRLREAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 606 LFGTMQDITERRESDEQLRLL 626


>gi|319426852|gb|ADV54926.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1438

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 134/561 (23%), Positives = 263/561 (46%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 878  QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 935

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                NF + + + +  + GR   E      DN+   M + I  + +  G++  Y+G+ +D
Sbjct: 936  E---NFSSQIRTMLKQQ-GRWANEVEAVRGDNRHFHMELTIDAIYDELGELSHYVGVFSD 991

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ ++     +  +  ++MV+D+D +K+
Sbjct: 992  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLV-----NKEIAHSLMVLDLDNFKR 1046

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD +L  ++ R+  +L     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1047 INDSLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVI 1106

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++  M  N+ E ++ +  SIG   +   +     +L+ A++AMYHAK  GGN  + +   
Sbjct: 1107 EAFKMSFNINEEQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1166

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   ++     + Y P I L    + G+EAL++ +HP  G I   E
Sbjct: 1167 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKIDLKRGRVAGMEALVRLNHPVQGLIPPKE 1226

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1227 FIPLAEESGLIVEIGEIVLRKACFAAQKWREQGLFNG-RVAVNLSSRQFALPDIQQRIES 1285

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1286 ILRLTKLPACHLELEITEGTVIKQPEAAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1345

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1346 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1405

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +  +    LL+ 
Sbjct: 1406 IQGYIFSKAIKESEFTLLLQA 1426



 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +   A     +L+V+ +       +L      + I    ER  L++ GSGD +WDWD
Sbjct: 718 PWWLSTEAKSLYFILLVVSLLIVTKT-ILRRRETQRQIALSEERLKLSLWGSGDEMWDWD 776

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  +    + L            N    IH  D++  R  L+          +  
Sbjct: 777 IETGNIFRSNIWGS-LEFPRDGHRSGKNNEESNIHPMDQERVREALNKHFYGETDHFEAA 835

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           +RV+  D  + W++ R + +  +   + LR  G   +I++ K+  E + 
Sbjct: 836 YRVKGKDENWVWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 884


>gi|163749905|ref|ZP_02157150.1| sensory box protein [Shewanella benthica KT99]
 gi|161330419|gb|EDQ01398.1| sensory box protein [Shewanella benthica KT99]
          Length = 1066

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/583 (24%), Positives = 269/583 (46%), Gaps = 20/583 (3%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            + Q   +     +       +  LA      S + +   D         P    I G + 
Sbjct: 485  IAQLSHSLNLMLEERSKANRQLKLAAAVFESSSEGILVTDADNHIELVNPAFTQITGYSL 544

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIR 500
              + G   + L       +   R   D         G+ Q E   +  + Q +   + I 
Sbjct: 545  EDVKGRSPSVLNS-----QQQTRHFYDEMWQSLQTEGKWQGEIWNKRKNGQVYPEYLAIT 599

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             + +  G I+++IG+  DI+ +K+  + I      D LT +PNR  +  ++   + ++  
Sbjct: 600  VVKDDAGQIIQHIGLFLDISNRKQYEQNIWYKTHYDLLTKLPNRSLYTIKVQQEMTMAQE 659

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            ++  +  ++ I++D++K  ND+ G  VG+ +L  +  R+  L+   D +ARL G+ F II
Sbjct: 660  NNR-QVAILFINLDRFKYTNDIYGHEVGNKLLRQVASRLKSLVNKHDFVARLGGDEFIII 718

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L       ++   A  +   +A P  +   ++ ++ASIG + +  +  +   + +NAE A
Sbjct: 719  LPRIRRQHQVQAIADKVNARLASPFGVDGDDLMISASIGISLFPENGSSEELLTRNAETA 778

Query: 681  MYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            MY AK+ G N+   +          R+ +++ L  AV   E  L Y PI+ L D  I G+
Sbjct: 779  MYQAKNDGRNNYRYYSSEMNEHILERIQLEQRLRQAVIRQEFCLHYQPIVNLDDRTITGV 838

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EALI+W  PK+G I+   F+ IAEE  +I+ I  ++L++   D+  W        I + I
Sbjct: 839  EALIRWQDPKFGMIAPDMFIPIAEETGLIEPIGEWVLQQALTDLAHWHRLGF--KISMAI 896

Query: 799  NIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            N++ + LL          ++AL+ K    P  + +  +ES++M + E+   +L  +R +G
Sbjct: 897  NVSGRQLLGQNKTSFKCLLKALLKKNDIEPQYLHIEITESMLMDDTEQCMTVLESIRSLG 956

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
            + + +DDFGT  S LSYL   P   +K + S +     +E    ++++I+ M +++E  +
Sbjct: 957  LDIYIDDFGTGYSSLSYLKRFPIAVIKIDKSFIDNMLESESDAKLIKAIVMMGQSLELKL 1016

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +A+ I      + L  +GCD+ Q    + PL    +   L ++
Sbjct: 1017 VAEGIETHAQWQMLQALGCDFGQGYLFSHPLPAQELASFLHQQ 1059


>gi|296285048|ref|ZP_06863046.1| sensory box/GGDEF family protein [Citromicrobium bathyomarinum
           JL354]
          Length = 881

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 150/683 (21%), Positives = 281/683 (41%), Gaps = 22/683 (3%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +    +     L             +    L       T  +       +         
Sbjct: 95  RVRRLSVTTAFGLIPHLLVGYAYAEWMFHGGLPLGFGIATLILAGSMAAVFLAGRPFPML 154

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           ++ I IW      +I       ++   L    +L+ + I     ++   +    Q     
Sbjct: 155 FVKIGIWLPIAVHSIAYNDHMAVVALPL---AILVAVGIALFQERYDRRSEEERQAEERS 211

Query: 404 GERQSLAV---LGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
             R    +     +G    W+ D     V  +   A   G     + G +   +  +   
Sbjct: 212 RNRSIDILRDYEATGQGWFWETDKHGRIVYISEVFAERYGFDHEDLLGKVFTSVFEVDPG 271

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           DRD     +           +   R   RA D    W  +  RP+ +S  +   + G   
Sbjct: 272 DRD-AERTIKFHFTAHSPFHELPVRGEGRAGDGT-VWWSVNGRPIFDSFENFCGFRGSGT 329

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE+++S E     A  D+LTG+ NR +    L+ +L        +  +++++D+D++K
Sbjct: 330 DLTERRRSAEHASRLALYDSLTGLANRHALSQALSKLLTHRNPAQRV-CSILMLDLDRFK 388

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G   GD +L  + RR+ +++     + R+ G+ F +++       ++      +
Sbjct: 389 HVNDTFGHPTGDALLNQVARRLEKVVGDLGTVGRIGGDEFQVLIPKRCEKARLEQLGNDI 448

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S++ P ++      + AS+G A       TS  ++++A+LA+Y AK  G      F  
Sbjct: 449 IHSLSQPYSIDGNRAVIGASVGIAIAPEHGGTSERLVRSADLALYAAKDAGRGRYRVFSD 508

Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +R  ++E+L LA++   L L Y P++    EEI G EAL++W+HPK G IS  
Sbjct: 509 DLHVAARERNQLEEELRLAIDTGGLQLHYQPVVNTATEEISGFEALMRWNHPKQGWISPE 568

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE+  +I A+  + + +   D+  W        +   +N++     D  L   + 
Sbjct: 569 KFVPVAEDAGLIVAMGEWAIRQACSDLARWPKS-----VRCAVNVSPLQFADPALPGVIA 623

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I+K    PSR++L  +ESV + + E +      L+ +G+ L LDDFGT  S L YL  
Sbjct: 624 DAIAKAGICPSRLELEITESVFLDDSEGTDATFAALKAVGVRLALDDFGTGYSSLGYLKN 683

Query: 876 IPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            PFD +K +   + G+T    +  AI+ +I  +A  +     A+ +    +++ +   GC
Sbjct: 684 APFDKIKIDQGFVRGATMPGSRNGAIIAAISSLANALGMDTTAEGVETLDELELIRMHGC 743

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            +IQ    + PL        L+E
Sbjct: 744 SHIQGYIYSKPLSTAEADARLEE 766


>gi|65318053|ref|ZP_00391012.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 569

 Score =  512 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 258/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I    N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVLFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      D     ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIA-----DKNEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHKQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  ++  G+EAL++    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVVLQPIIDLKTKKYTGIEALVRCTTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ IAEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPSEFIPIAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 ISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|254457458|ref|ZP_05070886.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086250|gb|EDZ63534.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 802

 Score =  512 bits (1320), Expect = e-142,   Method: Composition-based stats.
 Identities = 144/546 (26%), Positives = 268/546 (49%), Gaps = 12/546 (2%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVG 473
            D V   D  +  +        I G  +  + G   + +    H  D   ++ + D    
Sbjct: 263 SDGVVITDANQSIIKINESFTKITGYTNEELIGMTPKAFSSGWH--DEAFYKKMWDDIKQ 320

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              G+   E   R   ++ +   + I  + N +G +  YI I NDI+++K+  + I   A
Sbjct: 321 N--GQWSGEIIDRKKSSERYIAEMNIIALHNDDGILTNYISITNDISKKKEQEKLIHNLA 378

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D+LT +PNR  F +R+ + +  S   D  +  ++ ID+D +K +ND LG  +GD  L+
Sbjct: 379 YFDSLTDLPNRVLFEERVVSRIPFSKRHDK-KMALLFIDMDNFKNVNDTLGHFMGDMFLI 437

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++  I   ++  D LARL G+ F ++L   N+ + I   A  +  +   P+ +  +E+ 
Sbjct: 438 EVSNIIKNSIREQDTLARLGGDEFTVLLEDINSIMDIVPIAEKIIAAFNNPVLIESKELY 497

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDL 711
              S+G + +     + +E+ K A+ AMY  K  G N+ + F+ S        +  +  L
Sbjct: 498 TGISMGISLYPDDGKSYNELFKAADTAMYQVKASGKNNFQFFKQSMNEKITERLFLENSL 557

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N+EL+LVY P I L  + + G+EALI+W HP+ G I   +F+ I+EE   I  I 
Sbjct: 558 RNAIGNNELFLVYQPKINLETKRVYGMEALIRWRHPEIGLIRPDKFISISEETGQIYNIG 617

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L++ ++   D  +  +  ++  + + IN++SK L + +  + +  ++++     S ++L 
Sbjct: 618 LWVAKQAIIDTKALHEAGHI--LTVSINVSSKQLENEKFIDDICCVVNEIGIDKSYVELE 675

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES +M N +++  +L  L   G  L++DDFGT  S LSYL  +P  T+K + S +   
Sbjct: 676 ITESHIMSNIDKALKILNELSDKGFKLSIDDFGTGYSSLSYLKKLPAQTIKIDRSFVLDI 735

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              E   +I+ +II MAK +   +IA+    +  I  L  + C+ +Q    + P+  +  
Sbjct: 736 YKDEDDRSIVATIIAMAKALGKDVIAEGSETQEHIDTLKYLHCNKVQGYFFSKPIEIDEF 795

Query: 950 LKLLKE 955
            + +  
Sbjct: 796 KEFVDN 801



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A   +    W+ ++V + +  + ++  I GL           +L +IH +D +   +   
Sbjct: 134 AQELANIGHWELNLVTNDLFWSDEVYRIFGLKPQEFGATYEAFLEHIHPDDVELVNSSYS 193

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  R G      R+   + +  ++  R     +++G++LR IG  +DIT+QK + +  
Sbjct: 194 DSITNRCG-YHVTHRIVRKNGEVGFVEERCEHEFDNDGNVLRSIGTVHDITKQKIA-QNE 251

Query: 530 LCNA 533
           L  A
Sbjct: 252 LMLA 255



 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L +      ++  D+  + +      A ++G  + ++ G            +   F+   
Sbjct: 9   LILNSLEQNIFVKDLNSNYLFVNSTYAKLVGKEATAIIGKNDLDFF---PEEIA-FKYQN 64

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D  +  +  ++         D ++  +    +P+   NG++   +GI  DITE  +  E 
Sbjct: 65  DDSLVIKNKQIIDTVESILIDGKYKTIRTVKKPLYF-NGEVSAVLGIFWDITEFNEEKEH 123

Query: 529 ILCN 532
               
Sbjct: 124 FKKL 127


>gi|228937866|ref|ZP_04100494.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970747|ref|ZP_04131387.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977322|ref|ZP_04137717.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228782299|gb|EEM30482.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228788872|gb|EEM36811.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821772|gb|EEM67772.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 569

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|91977729|ref|YP_570388.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91684185|gb|ABE40487.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 823

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/562 (24%), Positives = 258/562 (45%), Gaps = 21/562 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +W +D      ++         G    +    +R  L  I 
Sbjct: 265 SLKKREESFRLLFDGNPMPMWVFDATTTEFLSVNDAAVQHYGYDRDAF---LRMTLREIW 321

Query: 458 INDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             D           + +     Q    +R   AD     ++   R +   +G    ++ +
Sbjct: 322 PRDE---WASHSHALLHVGDSYQSGGNWRHIKADGSEIQVLTFGRRVVF-DGR-DGFLVV 376

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE++K+   I   A  D LT +PNR  + +RL   L+        R  V+ ID+D 
Sbjct: 377 VVDITERRKAEAKIAHMAHHDGLTNLPNRALYQERLQQALEQ-GRAGGARVAVLCIDLDL 435

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  +GD +L  +  R+   +   D++AR  G+ F I+L    +  + +DFA 
Sbjct: 436 FKNVNDSFGHPMGDRLLRCVAERLRAQVGGQDLVARFGGDEFAIVLAQVTSPNEASDFAA 495

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + ++ P ++   E+ + ASIG A           +L+NA++A+Y AK  GG     F
Sbjct: 496 RLIEIVSAPYDMDGLEVVIGASIGIALAPGDGEDCDALLRNADMALYRAKAHGGGCHHFF 555

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +      R  ++ D+  A    E  L Y P+I L ++ I G E+L++W H + G IS
Sbjct: 556 EKEMDRQAQIRRDMELDMRHAFARGEFELHYQPLIDLAEDRISGFESLLRWRHIERGMIS 615

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ IAE++ +I  +  ++L +   +   W D      I + +N++        L + 
Sbjct: 616 PADFIPIAEDIGLIVGLGEWVLRQACIEAARWPD-----DIKLAVNLSPVQFRSRNLVQV 670

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + + ++++  +P R++L  +ES+ + + E +   L +LR +G+ +++DDFGT  S LSYL
Sbjct: 671 VISALAQSGLAPRRVELEITESLFLADSEANLATLHQLRSLGVRISMDDFGTGYSSLSYL 730

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +   T     +AI+R+I  + +++  T +A+ +     ++ L   G
Sbjct: 731 RSFPFDKIKIDRSFVKDLTERPDCLAIVRAISGLGRSLNITTLAEGVETIDQLQALRGEG 790

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C  +Q    +       I  LL
Sbjct: 791 CHEVQGFLFSPARPACEIDGLL 812


>gi|325273046|ref|ZP_08139356.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas sp. TJI-51]
 gi|324101819|gb|EGB99355.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas sp. TJI-51]
          Length = 1247

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 148/580 (25%), Positives = 270/580 (46%), Gaps = 12/580 (2%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + G   +  +         +    +  +     + + V   DI +         + I G 
Sbjct: 658  IAGIDCMLTIARDITERHLMQEKLQLAATVFENTAEGVLITDIDQRISAVNRAFSEITGY 717

Query: 441  AS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   ++    R      H  D   +  +         G  Q E   +    + +   + I
Sbjct: 718  SEIEALGQTPRLLASGQH--DSAFYAAMWHQLTAE--GHWQGEIFNKRKSGELYPSWLTI 773

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + N+  +I  ++ +  DI+  K +   +   A  D LTG+PNR  F +RL   L  + 
Sbjct: 774  SAVRNTEREITHFVAVFADISSLKHAQAKLDYQAHHDPLTGLPNRALFENRLQAALACAQ 833

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +  +  V+ +D+D++K IND LG  VGD +L  + +R+ E ++  D +ARL G+ F I
Sbjct: 834  VSNR-QGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFII 892

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +     +  A  +      P    E E   +ASIG + +       + +++NA+ 
Sbjct: 893  LLPGLHKPSDASSIANKLLACFNAPFQAGEHEFFTSASIGISLYPQDGSDVATLIRNADA 952

Query: 680  AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY +K +G N VE++     +  S+R+ ++ +L  AVE +E+ L + P + L  + +VG
Sbjct: 953  AMYRSKAKGRNRVEAYTRDLTAQASERIALEHELRRAVERNEMSLCFQPKLSLKTQSLVG 1012

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP +G +    F+ +AEE   I  +  ++LE+  R +  W+         + 
Sbjct: 1013 AEALIRWSHPTFGEVPPEHFIHLAEENGTILQLGDWVLEQACRQMHRWKRDYEAFG-PLS 1071

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN+A   L  + L + ++ L+         ++L  +E+ +M   E + ++L +L+K+G+ 
Sbjct: 1072 INLAGAQLRHHGLAKRIEQLLRTYGLKAGDLQLEITENFIMSQAEEALVVLHQLKKLGVQ 1131

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P D +K + S + G        AI R+II + ++++ TIIA
Sbjct: 1132 LAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAIARAIIALGRSMQLTIIA 1191

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
            + +  +   + L   GC+ IQ   V+ PL         L+
Sbjct: 1192 EGVENQAQQRFLAAEGCEQIQGYIVSLPLPPEEFAASFLR 1231



 Score = 78.8 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L   +     + G++ IVI I   +   +       Q + S        V     I W+
Sbjct: 267 LLVYGLPTVLFLMGVLAIVIRINRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWE 326

Query: 421 WDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D         +P    +LG            W   +H  D    +   DS     R   
Sbjct: 327 ADANDYTYSYVSPHAEGLLGYPLTDWL-KPGFWRSILHPEDALWAQAYCDSETAAGRDH- 384

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++RV  AD Q  W+   +  +   +G      G+  DI+E K++ +
Sbjct: 385 SLDYRVIRADGQALWVRNIVSMI--EHGHHPVMRGLMIDISETKRTED 430



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 51/171 (29%), Gaps = 8/171 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI-VWDWDIV 424
                      L         ++ +       Q + +  E+ + A   S D  +      
Sbjct: 522 FTGLTSAETFELDGTPALVVAVRDISQLKETQQQLQTSEEKFAKAFHASPDGLLLSRQSD 581

Query: 425 RDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              +        + G     ++     +   ++ +N+R      L+           +  
Sbjct: 582 GLLLEVNEGFCRLTGYDLNPTIDQTSLDLGIWVDLNERKRLVDQLNR----DGFVRDFTC 637

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +R +D Q     +  RP+  +   I   + IA DITE+    E +   A 
Sbjct: 638 HIRRSDGQIRLCELSARPLPIAG--IDCMLTIARDITERHLMQEKLQLAAT 686


>gi|228957047|ref|ZP_04118822.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229042486|ref|ZP_04190231.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|229108234|ref|ZP_04237856.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|229126059|ref|ZP_04255081.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|229143352|ref|ZP_04271783.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|229148966|ref|ZP_04277211.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228634506|gb|EEK91090.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228640159|gb|EEK96558.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228657381|gb|EEL13197.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|228675250|gb|EEL30472.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|228726839|gb|EEL78051.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|228802678|gb|EEM49520.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 569

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|170727362|ref|YP_001761388.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella woodyi ATCC 51908]
 gi|169812709|gb|ACA87293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella woodyi ATCC 51908]
          Length = 1441

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 130/563 (23%), Positives = 262/563 (46%), Gaps = 19/563 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +  E+  L   A+    + ++  D     V        +  +      G +  +   ++ 
Sbjct: 878  NAEEQLRLFERAIANISEGMFILDNNFIFVEVNEACCELSLIPKEQFIGSL--FKFNLYP 935

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   ++   + S + +++G    +      D     M + +  + +  G +  Y+G+ +D
Sbjct: 936  D---SYSEQIRSIL-HQQGSWSNDVESAKGDGTSFLMELTVDAIYDELGQLSHYVGVFSD 991

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K   E +      D LT +PNR S +  L  ++       +   T+MV+D+D +KK
Sbjct: 992  ISRRKLQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DTHHTLMVLDLDNFKK 1046

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND +G  +GD++L+ + +RI   + +   + RL G+ F I++ +  +    A  A  + 
Sbjct: 1047 INDSMGHQIGDELLIKVAKRIEAAVPYHTSIYRLGGDEFAILVDNNPDIGSSAVIANNVI 1106

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             + A P  L   ++ V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1107 DAFASPFELTSEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYSES 1166

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R+    ++ +  +   + +    + Y P I L    + G+EAL++ +HP+ G I  SE
Sbjct: 1167 INRNAIRQLEVENLIREGLRDDLFEVYYQPKIALKTGRMAGMEALVRLNHPEHGLIPPSE 1226

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   ++ +       WR         + +N++S      +L + +++
Sbjct: 1227 FIPLAEENGLIVDIGDLVMRKACFATQKWRSLGLF-DGRVAVNLSSYQFALPDLQQRIES 1285

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1286 ILRLTQLPAANLELEITEGTVIKQPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1345

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1346 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILKALKCEE 1405

Query: 935  IQDSHVASPLGFNSILKLLKERF 957
            IQ    +  +      +LL++ F
Sbjct: 1406 IQGFLFSKAVTETQFSELLEKNF 1428



 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +I ++I   ++Q +L      + I    ER  L++ GSGD +WDWDI   ++  +    +
Sbjct: 731 IITLIISAVIVQGILRRREVQKKIAKSEERLKLSLWGSGDEMWDWDIETGQIYRSNIWGS 790

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L            +    IH  D+D     L+S         +  +RV+   +++ W++
Sbjct: 791 -LEFPKDGQRSGDADEESNIHPMDQDRVTKALNSHFDGNSDHFEAAYRVKGKSDEWVWIL 849

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            R + +  +   + LR  G   +I   K + E + 
Sbjct: 850 DRAKIVERDEKDNPLRMTGTIKNINNFKNAEEQLR 884


>gi|152986676|ref|YP_001345771.1| hypothetical protein PSPA7_0376 [Pseudomonas aeruginosa PA7]
 gi|150961834|gb|ABR83859.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 760

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 164/752 (21%), Positives = 316/752 (42%), Gaps = 22/752 (2%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFG---FLSKLVNLPSGELLIWRACSEIALSSSLIIF 268
             R S+     A+AW  L    +          +  + +  L  + A   +     +  F
Sbjct: 7   ALRLSLAYLAVAIAWAFLSDHLLQNQVQDHDQLVFWMTAKRLFFFAATGLLLYLYLVRQF 66

Query: 269 LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM--VTASIARITLASIVLYYTYFI 326
                 ++  H     +  +  A    L+          V+   A +   +         
Sbjct: 67  RRKAQAYDELHGSEQRLNRALEAVRDGLWDWDLVTGRMFVSPGYAALVGLTPEELGDPIE 126

Query: 327 IYHGMKGYERAVLLIPAW---ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
            +      E    ++ A    +      +     +  +  +     +    L      +G
Sbjct: 127 TWKKRLHPEEFATVLEAHRNHLQGLTDNLDHIYRLRHKDGDYRWIHSRGRVLRDA---LG 183

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             +    +A     Q +  D  RQ+ AV   + + V   D     V   P    I G  S
Sbjct: 184 KPLHYTGVARDITLQRLKEDHLRQAAAVFDSTREGVLVTDAQAVIVHVNPSFERITGYRS 243

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     L      D+  ++ +  +           E   R    + +   + IR +
Sbjct: 244 EDVLGKTPAILRS-GRQDQAFYQRLWLALREQ--DVWSGEIWNRRKSGEIYPQWLHIRAV 300

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            N  G +  Y+G+ +D++  K+S   +   A  D+LTG+PNR     R+   L+    D 
Sbjct: 301 RNDQGQLTHYVGVFSDLSSIKRSENELDFLAHHDSLTGLPNRVLLRQRIEQALEDGK-DR 359

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +   +++ID+D +K IND LG   GD +L  +++R+   L    +L+RL G+ F I++ 
Sbjct: 360 AVAGALLLIDLDHFKHINDSLGHTTGDMLLKEVSKRLQHQLGERCLLSRLGGDEFAILVE 419

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           ++ +   +A  +  +      P ++  + I ++AS+G + +         ++++A+ A++
Sbjct: 420 ND-DPEAVARLSQRILDGFNAPFDIHCQPIYISASLGVSLYPEDASDVDHLMQHADAALF 478

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    +    ++     V ++  L  A+++ EL + Y P+  L    IVG+E+
Sbjct: 479 QAKDSGRNAYAFYTRVLTARARAHVQVESALRHALDHDELRVHYQPVHDLASGRIVGVES 538

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G +   EF+ +AEE  +I A++ ++L+R  R +  W+D+      FI +N+
Sbjct: 539 LVRWQHPERGLVPPGEFVPVAEECGLIAALDNWVLKRACRQMREWQDRGVGLE-FIAVNV 597

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +S+      L E +   + ++   P  ++L  +ES VM + E+S  LL RLR +G++L +
Sbjct: 598 SSRLFNRGGLEERIANALEESGLEPRYLELEVTESAVMEDFEQSLNLLCRLRILGVNLAI 657

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L  L  +P   +K +   + G        AI R+II +A+++   ++A+ I
Sbjct: 658 DDFGTGYSSLMRLKRLPVHKLKIDQGFVAGLPGAVDDAAIARAIIALAQSMGLRVVAEGI 717

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +     L   GCD+ Q      P    ++ 
Sbjct: 718 EHQDQALFLREHGCDFGQGYWYGRPQPPETLR 749


>gi|103487777|ref|YP_617338.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98977854|gb|ABF54005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 784

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 167/693 (24%), Positives = 313/693 (45%), Gaps = 38/693 (5%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
           +               + F +    P V   ++  T+A +++     + +          
Sbjct: 105 YRMCNRHALYSALLWGLPFWLQGLAPGVDHILSMWTIAVLMMLTLAIVAHS--------- 155

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
             +P    +FI  + L  A    L       A+     +++        Q  + +    +
Sbjct: 156 --VPLACALFIMPVSLSAAAALGLAGAPEIAAVTLVAGILLSAFCVRFAQIHIRSRRAEE 213

Query: 399 GIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI----- 449
            +    E  SL +      S D +W  D  R  V  +P +A  LG  +  + G       
Sbjct: 214 TLHEKSETVSLLLREFEETSADWLWQTDSNRRLVHVSPRLAYALGGTAEGLEGIPLLQAL 273

Query: 450 --RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W   +      +    +      RR          + D +  W  +   P  + +G
Sbjct: 274 SGDAWETGLFPKSLHDMAERMK-----RRESFSNLIVPVSIDGRPRWWELSASPRLDESG 328

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             L + G+ +D+TEQ+ + E I   A  DNLTG+PNR S  + L   L  +      R  
Sbjct: 329 RFLGFRGVGSDVTEQRATAEQIARMARFDNLTGLPNRLSLNEDLARALTRAIEA-KSRCA 387

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +++ID+D++K +ND LG  VGD +L  +  R+  L++      RL G+ F ++L + ++ 
Sbjct: 388 LLMIDLDRFKAVNDTLGHPVGDKLLAQVAARLKGLMERGMTCGRLGGDEFAVVLHNLSSP 447

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               D A  +  +I+ P  +   ++ V AS+G+A   +   T   + +NA+LA+Y +K R
Sbjct: 448 AVAEDLAQRIIATISRPYVVDNHQLFVGASVGYAIGPTDGATVETLTRNADLALYKSKDR 507

Query: 688 GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN V ++     +   +R +++++L  A+E  E  L Y P++   D  + G EALI+W 
Sbjct: 508 GGNVVAAYVASLHAQAEERRVMEQELRGALERGEFELYYQPVVTAADGTLNGFEALIRWT 567

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           + K GN+S   F+ IAE+  +I  I  ++L     + + W        + + +N+++  L
Sbjct: 568 NHKLGNVSPGRFIPIAEDARLISPIGEWVLRTACHEAMKWPS-----NLKVAVNVSADQL 622

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D      + + ++++  SP R+++  +ESV + +   +  LL +L  +GI L+LDDFGT
Sbjct: 623 TDPSFASVVVSALAQSGLSPQRLEIEVTESVFLRDGGGAAQLLDQLIGLGIRLSLDDFGT 682

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEI 922
             S L YL    F T+K + S + G+ +   + IAI+R+++ +A ++  +  A+    E+
Sbjct: 683 GYSSLGYLRKTQFSTIKVDRSFVVGAAKGSIESIAIIRAVVALADSLGMSTTAEGAETEL 742

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +++ L   GC  IQ  +   P+  + +L L + 
Sbjct: 743 EVETLRSFGCSNIQGYYYGRPMPASDVLTLFRR 775


>gi|256392528|ref|YP_003114092.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
 gi|256358754|gb|ACU72251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
          Length = 828

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 145/608 (23%), Positives = 263/608 (43%), Gaps = 44/608 (7%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                       +  +   G      +  S D++  +D         P    I G+    
Sbjct: 214 ARKISERELKARTAELDRVGRELKTLLDTSPDLMARFDRDLRCTYANPAAREITGV---E 270

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           M G       Y   +    +   L   +   R     EF V     Q+ ++  R  P  +
Sbjct: 271 MLGRTSRQRGY-SEDFLGVWEESLRQVLETGRDT-DREFSV-TVGGQYRFLHTRFVPELD 327

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++G++   + ++ D+T++++  E +   A +D LTG+ NR   + R++  ++ S   D+ 
Sbjct: 328 ADGEVTSVLSVSRDLTDRRRIEEALAEQAVRDPLTGLANRTLLVSRISEAIEYSGGADD- 386

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  V+ +D+D++K +ND LG A GD++L ++  R+ + ++  D++AR  G+ F ++  + 
Sbjct: 387 RLAVLFLDLDRFKLVNDSLGHAAGDELLAAVADRLRKAVRRGDLVARFGGDEFVVLCENV 446

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               + A  A  +   +  P +   + + V  SIG A       T  E+L++A+ AMY A
Sbjct: 447 AGHAEAASIAQRVIDCLIRPFDCAGKPMHVRTSIGIALAHGPDTTVDELLRDADAAMYQA 506

Query: 685 KH----RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           K      GG              R+ +++DL  AVE  E  LVY PI+ L D  + G EA
Sbjct: 507 KSDGAVAGGYRFFEPATHERAVHRMNLEQDLRQAVERGEFTLVYQPIVALDDGRVTGAEA 566

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF----- 795
           LI+W HP+ G ++ + F+ +AEE  +I  I  ++L+   R + +W               
Sbjct: 567 LIRWRHPERGLLTPAAFLEVAEETQLIVPIGRWVLDEACRQLAAWNAMLPPGSEGEAEGG 626

Query: 796 -------------------------ILINIASKDL-LDNELCEGMQALISKTLYSPSRIK 829
                                    + +N++S+ L  D +L   +   I++      RI 
Sbjct: 627 AEVGAGVAAGVGAGVAAGAGSRLPLLAVNLSSRQLSHDGDLVTQVAKAIARHGVPAGRIC 686

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+ V      +R  L      G+ + LDD+GT  S L +L   P DT+K +   ++
Sbjct: 687 LEVTETAVHEASLTARSALAAFSAAGMKIALDDYGTGYSSLGHLRDNPVDTLKIDRVFIS 746

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G T      AI+ ++I +A  +   ++A+ +      + L  +GCD+ Q    A PL   
Sbjct: 747 GLTRNRGDDAIVVAVITLAHALGMRVVAEGVETPEQRERLRELGCDFAQGHLFAMPLCAE 806

Query: 948 SILKLLKE 955
              +LL+ 
Sbjct: 807 EFGELLRS 814



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D+++  D     +  +   A   G    SM G       Y              +
Sbjct: 105 LSACADMIFFKDRESRFLRVSDSAAEFSGTDPASMIGK--TVRDYFTPEHAAAAFATERA 162

Query: 471 FVGYRRGRLQYEF-RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +   R    +E   +R    +   +    +P+ + +G I+   GI+ DIT +K
Sbjct: 163 IMSTGRALTDFEEPHLRPGTPEEETLSASKQPLRDFDGRIIGTFGISRDITARK 216


>gi|83594889|ref|YP_428641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577803|gb|ABC24354.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 951

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/620 (21%), Positives = 274/620 (44%), Gaps = 12/620 (1%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
             I      +   +R          +  +      I   VI+ +         + +   R
Sbjct: 331 ALIGAGPRELTGRRRDGTTFALELALSEVRTEGRRIFIAVIRDITQRKETEGALAATRAR 390

Query: 407 QSLAVLGSGDIVWDWDIVR----DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                     +V+  ++        +  +  +  +LG+   ++      +L  +  + R 
Sbjct: 391 LQTIADNVPGLVFQRELTAEGVLRFLFVSNGVHEVLGITPEALLADGELFLGAMDPDVRA 450

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            FR  L      R   ++ + ++R  D +  W+    RP    +G ++ + G+  D+T++
Sbjct: 451 AFRETLRQSAS-RLEPMEEDIKLRGRDGEERWLRGWSRPSRREDGSVV-WDGVTLDVTDR 508

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K++ + +   A+ D LTG+ NR  F+DR        A        V+ I +D++  +N  
Sbjct: 509 KRAEDKLTFLAYYDPLTGLGNRSLFIDRFDRA-RRFAESIQAWVAVLSIGLDRFGMVNAT 567

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G  +GD VL+++TRR+ + L+   I+ R  G+RF ++L    +   + +    ++ +  
Sbjct: 568 IGHTMGDKVLIAVTRRLQQSLEAGSIVCRAGGDRFLVLLTGLTDRADLREVVATIQDAFV 627

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFR 701
            PI +  ++  +  +IG A        +  ++ +A+ A++ AK  GG   + +  + +  
Sbjct: 628 PPIEVEGQQFDIGLTIGGALHPEDGREAETLIMHADAALHRAKGGGGAFQMFTPEMGARA 687

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + I+  L   +E  E    + P + L    I G EAL +W+ P+ G +   +F+ +A
Sbjct: 688 AHLLTIQHKLRRGLERHEFVAYFQPQVDLRSGLITGCEALARWNSPEDGLVPPGKFIGVA 747

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQALISK 820
           EE  +I AI   +L+   R + +WR +   P + + +NI+ +   +  +L   +   + +
Sbjct: 748 EEYGLIDAICGQVLDDSCRWLSTWRARGL-PQVPVAVNISGRQFQNARQLVAMVDQALRQ 806

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P  ++L  +ES  M +PE +  ++  LR+ G+S  +DDFGT  S LS L   P   
Sbjct: 807 SGVDPRLLELELTESSAMSDPENAIAVVNLLRERGVSCAIDDFGTGYSSLSVLKRFPIGK 866

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +     AI+++II MA  +   ++A+ +     +  L  + CD +Q  
Sbjct: 867 LKIDRSFVMDVTTDPNDAAIVQAIIAMAHALNLRVVAEGVETLDHLAFLREVHCDAVQGF 926

Query: 939 HVASPLGFNSILKLLKERFP 958
             A PL    +  +L    P
Sbjct: 927 LFARPLPGEDMALMLAGGPP 946



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  +  +LG     M   +   L  IH  DR+++   L             EFR    
Sbjct: 163 FLSSGVHAVLGYHPAEMSVALDGCLNAIHWADRESYLRRLRQS-AQTLAICSEEFRAITR 221

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +    W+    +P + +NGDIL + G+  D+TE+K++   +  
Sbjct: 222 EGAVKWLSGASQPRAMANGDIL-WDGVLVDVTERKRAELWLEM 263



 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 9/125 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFR 465
             + +  + D +   +      +    + T  G    G + G     L  +   DR    
Sbjct: 261 LEMIMDRAADGIVTINEQGVIESANAAVGTFFGYADRGELIGRRVEIL--MAEADRRQHT 318

Query: 466 TILDSFVGYRRGRL----QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             +  +     G L      E   R  D     + + +  +      I  +I +  DIT+
Sbjct: 319 RHMLRYRETGDGALIGAGPRELTGRRRDGTTFALELALSEVRTEGRRI--FIAVIRDITQ 376

Query: 522 QKKSL 526
           +K++ 
Sbjct: 377 RKETE 381


>gi|229188834|ref|ZP_04315868.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228594647|gb|EEK52432.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 569

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDREGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    +   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +V  PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVVLQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS +EF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 ISPNEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 FSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|302129938|ref|ZP_07255928.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 674

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 142/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%)

Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453
             ER  L    V+ + D +        D+     V   P    I G     + G     L
Sbjct: 80  SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 139

Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 D       ++   + + R  ++ E      D    W+ + I P++N  G    +
Sbjct: 140 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 195

Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545
           + +  DITE+K                           +  E +   AF D LT + NR 
Sbjct: 196 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 255

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             ++ L             R TV+ +D+D +K +ND +G   GD +L  +  R+   ++ 
Sbjct: 256 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 314

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   
Sbjct: 315 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 374

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
                 ++L++A++AMY AK +G      F  S      D ++I+  L  A+EN +  + 
Sbjct: 375 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 434

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI     E +VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   D+ 
Sbjct: 435 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 494

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +WR       + + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+ 
Sbjct: 495 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 554

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
              +L ++R +G+ + LDDFGT  S L Y+   P D VK + S ++     ++  AI+ S
Sbjct: 555 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYDRSQAIVSS 614

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ + + ++  I A+ +        L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 615 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 668


>gi|229194941|ref|ZP_04321722.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|228588509|gb|EEK46546.1| Sensory box/GGDEF [Bacillus cereus m1293]
          Length = 569

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 256/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +    + E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQMLWKRILSGK--VWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKRE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGIEALARCSTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T +  +R+ L  +ES+ + + +     L  LR +GI + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLHLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 KSMGCDYVQGFYYAKPLSVAELKEKL 565


>gi|299068645|emb|CBJ39881.1| putative signal transduction eal-ggdef domains transmembrane protein
            [Ralstonia solanacearum CMR15]
          Length = 1178

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 142/584 (24%), Positives = 257/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D  +     V   P    +
Sbjct: 604  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADAQQPDLPLVYVNPGFERM 659

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  R  L          ++   R    D      
Sbjct: 660  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRAALRDASE-----IRVLLRNFRKDGHAFLN 714

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 715  NFLLSPVRDSQGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQGV 774

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 775  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 834  VFALVISHAGSHGTDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGSDSETLVR 888

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY AK  G N +E F        S R+ ++  +  A+E  +  L+Y P I     
Sbjct: 889  HAEMAMYFAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDTKTG 948

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 949  RICGLEALIRWIHPTRGLLPPAAFIPVAEESGLVVEIGNWVLAEAAQQRAAWHARGLGED 1008

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL   ++  LL+ 
Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 1172



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +   A     + +    ER       + D ++DWDI        
Sbjct: 333 QGGARDELSLLERTFNEMRTAILRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392

Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG  +               +  ++H  D + F   L + +   R    +  RV
Sbjct: 393 ASLHRLLGSDALLAQGDEDGVSRTLTFQQFVHPEDMEAFGRGLRAALHSDRDAWHHVCRV 452

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  LR +G   DI+++      + 
Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRALRMVGGVTDISQRSAMEADLR 497



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  + G+  G        
Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSSGMYLLTGVPPG-PPPSFAQ 546

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 547 QAQFFTGDSYNRLREAASRAVTE-GVPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 606 LFGTMQDITERRESDEQLRLL 626


>gi|149911615|ref|ZP_01900227.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
 gi|149805336|gb|EDM65349.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
          Length = 950

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 164/944 (17%), Positives = 327/944 (34%), Gaps = 31/944 (3%)

Query: 22  LLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI----DGISRRIEV 77
                + + A E I I S   V  L   T+ + ++   +     +        +      
Sbjct: 1   FSLNTTFAQA-EGIVIDSDFEVGRLGLTTKYFEDKTNSYTFDYLSQRQSAIPWVKSNQAH 59

Query: 78  SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137
            +        W    + N +D +   ++      L     +     SR ++    +    
Sbjct: 60  FSVGFSDSTFWFKGEVVNKADVEKYLILDFGDSLLDYIDLYLIHDDSRVLVKRLGTRR-Y 118

Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNFYKDTVNSFTLYRGII 195
            D   ++ +      I  G  + + + I T       + +W  N Y D  +   L  GI 
Sbjct: 119 DDDNMSNLTFATGFKIGAGETIHYFIRIKTTAFLQTPLAIWNANDYIDDKSQHKLMVGIF 178

Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS-KLVNLPSGELLIWR 254
           IG+  ++  +LT  Y+    + L+         L  I I  GF     +++         
Sbjct: 179 IGLFLMMVCYLTFLYIHLHEARLVQYIVFIICYLSVIWIIEGFGFIYKIDIIVQYYDSII 238

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
                 +  +L +F    L   R+ A     T   I    I+      +    + I    
Sbjct: 239 VVLMGVIGLNLSLFARQLLKL-RYRAWFSLSTRILITSSIIVILSPLLFSFKISIILISV 297

Query: 315 LASIVLYYTYFIIYHGMKG-YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           LA  +   +       +    +     + + +   +      +     L        + G
Sbjct: 298 LALGITLLSIVCGLFFIHDESKDVRFYVLSLVYFILGIDIHILTRFGLLSEFEFADYVSG 357

Query: 374 GLVLIVIL-----IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
              LIV++         +    +      + + S  ER       + + ++   I  + +
Sbjct: 358 CSALIVLIYLCWNFAKQMAHDRIVKKDVEKQMISVNERYYSVFQNAAEGMFTTSIEGNIL 417

Query: 429 TTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                +   LG      M+    +     + +     R  +   +         E     
Sbjct: 418 AINKSMCRTLGFINLEDMNKSGHSKADEFYAD--PQLRATIMETLRVEGEVNSVEMSGYD 475

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
              +     I +R    ++  I    G   + T++K+    +   A  D LTG+ NR  F
Sbjct: 476 RYGEIFHGEINMRLNIQAD--ITVIDGSFVNTTKRKQHEIKLESIAKYDQLTGLVNRSHF 533

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              +   L+ +         ++ +D+D++K +ND+ G  VGD +L  +T  +   L    
Sbjct: 534 EKLVGASLE-ANRSVLEDNILLYLDLDQFKLVNDICGHDVGDSLLKKITVVLKSFLDESA 592

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ILARL G+ FGI+L   N    +                   R   +  SIG  +   S 
Sbjct: 593 ILARLGGDEFGILLNHTNFDNALEVADTIRCGIEDFRFTHNGRHFVLGVSIGVVTLDESI 652

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLV 723
              S+ L  A+ A + AK +G N V  +   +        +      L  A++ +   L 
Sbjct: 653 ENFSQALSLADTACFTAKEQGRNRVHVYSKCNDVMLGHQREMRWIGVLREALDENRFELA 712

Query: 724 YHPIIRLMDEEIVGL--EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           +  I  L      G   E L++         S SEF+  AE    +  ++ ++++   + 
Sbjct: 713 FQTIKPLSASIKEGYRYEILLRLRDEDGNLQSPSEFIAAAENYNFMSQLDRWVVKTYCQW 772

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           + S             IN+  + L+D  +   ++  I      P ++    +ES  + + 
Sbjct: 773 LSSNPKHLANLS-SASINLCGQSLVDRSMHSYIENTILTYGIPPEKLCFEITESQAIMDF 831

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAIL 899
           +++ L + + + +G   +LDDFG+  S  SY+  +P D +K +GS +           ++
Sbjct: 832 DQTILFMNKFKALGCRFSLDDFGSGFSSYSYIKRLPIDQLKIDGSFVKNIETDNVDYTMV 891

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +S   +AK +    +A+ +  E     L+ +G DY+Q   +A P
Sbjct: 892 KSFNEIAKAVNIKTVAEYVENENIKNILSGIGIDYVQGYLIAKP 935


>gi|218440066|ref|YP_002378395.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218172794|gb|ACK71527.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 712

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 136/560 (24%), Positives = 257/560 (45%), Gaps = 28/560 (5%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            D  R +     S + + +     +     P            +       L   H    
Sbjct: 166 EDLNRLASFPELSPNPIIEISFQGEITYINPAAN---------LQFNNLQQLQLDHP--- 213

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +LD     +   L  E +V     +       +  + N             DITE
Sbjct: 214 -ILMGLLDQSKNTQGNLLLREVQV-----EESIYEQYVHYLPNHQ----LIRSYLFDITE 263

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++ + +   AF D LTG+PNR  F  +L   L+ +   +     ++ +D+D +K IND
Sbjct: 264 RKRTEQKLKYQAFHDVLTGLPNRIWFNQQLIAALNNAKRQE-TPLAILFLDLDGFKNIND 322

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL    +R+   ++  D + R  G+ F ++L   +++      A  +   +
Sbjct: 323 TLGHTFGDQVLQKFGKRLLGSVRAGDTVCRWGGDEFVVLLPYISHTEDSIKLAQRILDVL 382

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             P  + +++  +  S+G + +         +LKNA+ A+Y AK RG NH + +   +++
Sbjct: 383 KHPFEIQKQQFYIKTSMGISIYPQDGEDGETLLKNADAALYRAKERGRNHFQFYSTTMTT 442

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             S  + ++  L  A+EN EL L Y P +++   EI G+EAL++W HP+ G +S  + + 
Sbjct: 443 KASLVLRLENLLHRALENQELSLYYQPQVKIKTGEITGIEALLRWTHPELGQVSPHKLIP 502

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  + L+   +  + W+    + P+ I +N +++      L   +  ++ 
Sbjct: 503 LAEQTDLIIPIGQWALKTACQQSLDWQK-LGIKPLPIAVNFSARQFQQPNLVTLINQVLE 561

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T  +P+ ++L  +E+ +M N + +R  L  LR++G+ ++LDDFGT  S LSYL   P  
Sbjct: 562 ETGLAPNLLELEITETTIMQNEDFARQALEELRQMGVHISLDDFGTGYSSLSYLQKFPLT 621

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +           + +AI+ +II +  +++  +IA+ +     ++ L R+ C   Q 
Sbjct: 622 TLKIDQCFTHSLKDNPQDLAIISAIITLGNHLQLRVIAEGVETLQQLEILQRLHCQEAQG 681

Query: 938 SHVASPLGFNSILKLLKERF 957
              + PL    I +LLK+ F
Sbjct: 682 FWFSRPLNSEDITQLLKQYF 701


>gi|302523746|ref|ZP_07276088.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302432641|gb|EFL04457.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 901

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 151/558 (27%), Positives = 263/558 (47%), Gaps = 14/558 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                 +  +  V    + V          +  P    ILG+    + G     L     
Sbjct: 349 ARRRVEQHYATVVAALDEGVLVIGPTGLIQSANPSACRILGVPEPELLGVSCTTLVLFDE 408

Query: 459 NDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           +        L S    R G        R+R  D +  W+ +  R + + + + +  +   
Sbjct: 409 DGNRIPDDELPSMHTRRTGVTHNGLVVRLRRPDGRDVWVSLTSRLLDSDDPNGVSVVTSF 468

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++     +   A  D LT + NR   LDRL         D      V+ +D+DK+
Sbjct: 469 TDITERRAISARLAHEATHDPLTRLANRTLVLDRLD------RRDGAESAAVLFLDLDKF 522

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD VL     R+       D++ RL G+ F ++  +     ++  FA  
Sbjct: 523 KLINDSLGHPVGDQVLRIAGERLRRATGPDDVVGRLGGDEFVVVTSATTGPAQVGVFAAH 582

Query: 637 MRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +R  ++ P+++  R++ + AS+G        + T+ ++L++A++AMY AK RG    E F
Sbjct: 583 LRSVLSEPVSVHGRQLHLDASMGIVLVEPDDRRTAEDLLRDADVAMYQAKSRGRGRFEFF 642

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            V        R+ +++DL  AV + +L+  Y P++ L   E+VG+EAL++W HPK G IS
Sbjct: 643 DVALRERMQRRLRMEQDLRDAVHSGQLWPAYQPVVDLRTGEMVGVEALLRWTHPKHGAIS 702

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ +AEE  +I  +  ++L    R++ + R       + + +N++ + L D  L   
Sbjct: 703 PAEFIPLAEESELINVLGKYVLRDTTRELAALR-TGRGLDLSLKVNLSVRQLDDPHLVPA 761

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  ++ T   P  + L  +ES +M +   +  +L  LR +G+ L +DDFGT  S L+ L
Sbjct: 762 VRDALATTGLPPGSLTLEVTESALMRDTSAAAEVLSALRSLGVLLAIDDFGTGYSSLAQL 821

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  DT+K + S +TG  +     AI+ SII MA  ++ T++A+ +    ++  L  +G
Sbjct: 822 RRLTLDTLKIDRSFITGIADSRDAAAIVTSIIAMAHAVDLTVVAEGVETAEELALLRELG 881

Query: 932 CDYIQDSHVASPLGFNSI 949
           CD  Q  H+  PL    +
Sbjct: 882 CDQAQGYHLGRPLAAAEL 899



 Score = 41.9 bits (97), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/115 (9%), Positives = 29/115 (25%), Gaps = 19/115 (16%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D +             P   T+ G  +    G   + +  I  +        +   V  
Sbjct: 262 SDAIVTITGEGIVTGWNPAAETVYGWPAPEALGRRVHEVLGIDPD-----PASIRDGVAQ 316

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +          R  D     + +      +       ++ +  D T +++  +  
Sbjct: 317 QTH--------RGRDGSPRQVRVSATETVD------GFLLVCTDETARRRVEQHY 357


>gi|71282294|ref|YP_268360.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71148034|gb|AAZ28507.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
            psychrerythraea 34H]
          Length = 1075

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 145/528 (27%), Positives = 248/528 (46%), Gaps = 9/528 (1%)

Query: 432  PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
            P ++ I G ++  + G                ++++ +     R G  Q E      +  
Sbjct: 549  PALSDITGYSTSELIGKDPKIFSS-GKQSLQFYQSMWEEIK--RTGTWQGEIWNTRKNGD 605

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             +   + I  + + +G + R I + +DITE+KK    IL  A  D+LT +PNR+ F+DRL
Sbjct: 606  EYPEWLSINTIYDDDGKVFRRIALFSDITEKKKKDALILRQANYDSLTNLPNRRMFIDRL 665

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               + +S      +  ++ ID+D +K IND  G   GD +L    +RI   ++  D +AR
Sbjct: 666  EQEIKVSHR-KKQKFALIFIDLDNFKNINDTRGHVFGDQLLTEAGKRITHCVREVDTVAR 724

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            L G+ F I+L   +    +      +  +++ P  + +    ++AS+G   + +   T+ 
Sbjct: 725  LGGDEFTILLSDLSEIYNVESICQKVLLALSQPFCISKLYTYISASLGVTIYPNDASTTL 784

Query: 672  EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
            E+LKNA+ AMY AK  G N    F   +     +++ +  DL  A+  ++L + Y PII 
Sbjct: 785  ELLKNADQAMYLAKDLGRNQFCYFTASMQEQAQNKLELMNDLRTAISLNQLAVFYQPIIE 844

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
            L    I   EAL++W HP  G +S +EF+ +AEE  +I  I  ++ ++  + I   + Q 
Sbjct: 845  LQTGIIRKAEALLRWKHPVRGMVSPAEFIPLAEESGLIIEIGDWVFKQTVQHIKECKKQL 904

Query: 790  NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                I I IN +     +          +++   S   I +  +E ++M N   +   L 
Sbjct: 905  G-LDIQISINKSPVQFRETVSQLDWLTYLTENQLSGKNIVIEITEGLLMNNNTSTMEKLS 963

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAK 907
            RLR   I L++DDFGT  S LSYL     D +K + S      +    ++   +II MA+
Sbjct: 964  RLRAADIKLSMDDFGTGYSSLSYLKKFELDYLKIDQSFTKNLAQGSEDMILSEAIITMAQ 1023

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +   +IA+ I  E   K L   GCDY Q  + + P+  +  L+LL  
Sbjct: 1024 KLGLKVIAEGIETEEQRKLLLDSGCDYGQGYYFSRPIPADDFLQLLAR 1071



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 64/212 (30%), Gaps = 7/212 (3%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +   +       L++  +++   +     +    ++        L   + L       ++
Sbjct: 315 LIVSIGFSSTLFLIVLYFLIGLYFSTIRSINYLTKVTGKFYGGDLDARVTLYTRDELNSI 374

Query: 387 IQHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                      Q +  + E    R    +  S   +W                 ++G+  
Sbjct: 375 ALGFNEMASSFQNLLIEKEEISTRLLAIIDNSPIGIWFTGTDGRYHFVNKTFCNLVGIEE 434

Query: 443 GSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             M     +     +      N      + +G     + YE  +   + + + + I    
Sbjct: 435 EDMLNTPSSNLAELLGSEIAHNCLDSDRAALGQDLAHVSYET-IPRLNAKPYLLEITKVK 493

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           + N+ G ++  IGI+ DIT  K+  E  L  A
Sbjct: 494 LKNTRGKVVGLIGISKDITN-KRQQEDDLKLA 524


>gi|218230897|ref|YP_002365424.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218158854|gb|ACK58846.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 567

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKRKELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQDLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 360 ISPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563


>gi|83313593|ref|YP_423857.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82948434|dbj|BAE53298.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 982

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 145/572 (25%), Positives = 270/572 (47%), Gaps = 14/572 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E   LA       G+ +   D  R  +        + G  +  M G   + L  
Sbjct: 415 ARKQAEESLRLAATVFETVGEAIVVTDRERRILAVNAAFERMTGWNAAEMVGQTCDLLAV 474

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM---SNSNGDILRY 512
             I  R+    +    +    G+   E   R  +++     + +  +   +++ G+  R+
Sbjct: 475 EMIGLRE-IEEMWR--LAANTGQWSGETWTRRKESEPFPAALALTAVDQGADAKGEDGRF 531

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DIT +++  + I  +A  D LT +PNR + ++ L   +  +      R  V+ +D
Sbjct: 532 VLLLRDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGEAIVRAEQTGE-RLAVLYLD 590

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ++++K IND  G AVGD++L  + RR+   ++  D++ RL G+ F ++L S  +      
Sbjct: 591 VNRFKDINDSYGHAVGDELLRQVARRLKACVRASDVIGRLGGDEFVMLLPSVGDHTAAQA 650

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNH 691
            A  +  + A P ++   ++    SIG A +      +  +L  A+ AMYHAK  G    
Sbjct: 651 CANKVLYAFAEPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAKRGGLPYS 710

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +    ++RV ++ DL LA+   +  LVY P +  +   I+G EALI+W HP   +
Sbjct: 711 CFDIEMDRQVAERVSLENDLRLALGEDQFRLVYQPKVDALSGAIIGAEALIRWRHPVRAD 770

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+ +AE   +I AI+ ++L    R +  WR Q  + P  I +N++     D  L 
Sbjct: 771 VSPGLFIPVAERAGLIGAIDDWVLVEACRQVAEWRAQGLILP-SISVNLSPAQFHDGRLK 829

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E ++A ++ +   PS ++L  +E+++  + +R+  +LG+L  +G+ ++LDDFGT  S L+
Sbjct: 830 EKVKAALAGSGLPPSVLELEITETMMASDVDRAIEILGQLTTLGVRVSLDDFGTGYSSLA 889

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P  T+K + + +T      K  AI+ S+I +A N+  ++IA+ +        L  
Sbjct: 890 YLKLFPVSTLKIDRAFVTELPGNAKDGAIIASVIALAGNLGFSVIAEGVETREQAAFLAA 949

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            GC  +Q    + P+   +   LL     L++
Sbjct: 950 RGCPIMQGFLFSRPVNAATFAGLLSNPEGLIR 981



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDN 463
                  + + ++        +   P +A I G      +   + +    ++    DR+ 
Sbjct: 302 YRSLFENAVEGIYRTTPDGRYLDANPALARIYGYKDPAELIAGLTDIARGLYVDPADRER 361

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           FR      +        +E RVR    +  W+    R + +    ++ Y G   +IT +K
Sbjct: 362 FR----EILARDSVVRNFEARVRTRSGEIIWIAENARAVYDGRDRLVCYEGTVQNITARK 417

Query: 524 KSLEGILCNAF 534
           ++ E +   A 
Sbjct: 418 QAEESLRLAAT 428


>gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 722

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/570 (24%), Positives = 264/570 (46%), Gaps = 12/570 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPI 449
           L      Q +     R       + D +   D    R+T   P ++ ++ L+   + G  
Sbjct: 130 LELRSARQRLIESELRYRRLFETASDGIVLLDRESGRITDVNPALSEMINLSPSQLLGRT 189

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                    ++  + + +LD  + +R      ++ +         + +       +   +
Sbjct: 190 FGETEPF--SNNPSCKRVLDE-LRHRDHVWFEDWILETGRGTSVNVEVNGSVYKAATTTV 246

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           ++      DIT++K++   I   A  D LTG+PNR  F DRL   +  +      +  V+
Sbjct: 247 IQC--NLRDITDRKEAEARIRYMALHDALTGLPNRTLFEDRLDNAIAQARRHHG-QVAVL 303

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D++K IND LG  VGD++L  +  R+   L+  D  ARL G+ F IIL    +   
Sbjct: 304 MLDLDRFKNINDSLGHHVGDELLEQVAARLRACLRESDTAARLGGDEFAIILPEIASIED 363

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  + + +  P ++ + E+ +  SIG A +         +L+ A+ AMY AK +G 
Sbjct: 364 AEIVAKRILEVLQEPFHVEQHELNIGGSIGIARYPDDGTDHGTLLRAADAAMYDAKAQGR 423

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F      + ++   +  D+  A +  E  L Y P + L   +I G+EAL++WDHP
Sbjct: 424 GMYRFFSPELNEAAQLRHMLVNDVRHARQRGEFLLYYQPQLSLASHQISGVEALLRWDHP 483

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G IS + F+ + EEL ++  +  ++L    R    W+ Q   PP+   +N++++    
Sbjct: 484 KHGIISPALFIPLLEELGLMSDVGEWVLRTACRQNAEWQAQGL-PPMRTAVNLSAQQFYR 542

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             + + +  ++ ++   P  ++L  +E++ +   E +  ++  L+ +G+ LTLDDFGT  
Sbjct: 543 GNIVKTVARVLEESGLEPKWLELELTETLTLDESETTIEIMNGLKNLGVGLTLDDFGTGW 602

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL   P D +K + S M    + E   A++ SI+ +A+++  T IA+ +     ++
Sbjct: 603 SSLSYLRRFPLDRIKIDRSFMRDVTTHENAAAVVHSILNLAQSLGLTCIAEGVETAEQLQ 662

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  C  +Q    + PL    +  LL+ 
Sbjct: 663 YLKQQLCSEMQGFFFSHPLPAAEMPTLLRA 692


>gi|297204084|ref|ZP_06921481.1| diguanylate cyclase/phosphodiesterase [Streptomyces sviceus ATCC
           29083]
 gi|197714750|gb|EDY58784.1| diguanylate cyclase/phosphodiesterase [Streptomyces sviceus ATCC
           29083]
          Length = 714

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/566 (23%), Positives = 246/566 (43%), Gaps = 19/566 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHI 458
           + +   R      G+   +   D+  + +     +  + GL   +M G  ++ W    H 
Sbjct: 148 LHATEARFRAVFEGAAIGIGIADLDGNVLQVNGALLRMFGLTDPTMRGRKVQEWT---HP 204

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D      + D  V   R     E      D    W  + +  + +++G     + +  D
Sbjct: 205 EDAPQTWKLYDELVRGEREHYHLEKAFYRPDGTVLWTNLTVSLLRDADGAPQYQLALMED 264

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            TE++     +   A  D LTG+PNR  F +RL   L      D  R  +  +D+D +K 
Sbjct: 265 TTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKALS---AGDGQRFGLCYLDLDGFKT 321

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           IND LG A GD +LV +  R+        +++ARL G+ F  +    +   ++ D A  +
Sbjct: 322 INDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDTESEVDDLAARI 381

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P+ +  RE+TV  SIG     + +   +E+L++A++ MY AK  GGN  E    
Sbjct: 382 MNVLLAPVRIDGRELTVRGSIGIVEGPAGERGPAEVLRSADITMYRAKSAGGNRFELADP 441

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +         +   L  A++  E ++ Y P++ L D  + G EAL++W HP+ G +   
Sbjct: 442 EADARAITRHGLTTQLPAALDRGEFFIEYQPLVHLGDGSVRGAEALVRWLHPQHGVLGPD 501

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQAN----MPPIFILINIASKDLLDNELC 811
            F+ +AE   +I  +  ++LE+  R    WR++        P+ I +N++   L    L 
Sbjct: 502 RFIPLAEHTGLIVPLGRWVLEQSVRQAREWRERYGENTAGGPLRINVNLSPCQLTHPGLV 561

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           +    ++ +    P  + L  +ES ++G  +     L +L ++G+ + LDDFGT  S L+
Sbjct: 562 QDTVDILERAGVDPDALCLEVTESALIGADDDLLKPLRQLAEMGVDIALDDFGTGYSNLA 621

Query: 872 YLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  +P   +K + S              + I+  I+ +A  +   +  + +      ++
Sbjct: 622 NLRRLPVSVLKLDRSFTRSMQQFPADPVDLKIVEGIVSLAHGLNLAVTVEGVETGAQAEQ 681

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           L  +GCD  Q  + A P     + +L
Sbjct: 682 LRILGCDTAQGWYYARPGPPERLHQL 707


>gi|167626093|ref|YP_001676387.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella halifaxensis HAW-EB4]
 gi|167356115|gb|ABZ78728.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella halifaxensis HAW-EB4]
          Length = 1072

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 146/588 (24%), Positives = 273/588 (46%), Gaps = 18/588 (3%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             +  I   V Q V       + +       S     S + +   D         P    I
Sbjct: 483  ELAQIAVAVNQMVSERMKSKRALHQA----SAVFRHSAEGILVTDANNRIELVNPAFTKI 538

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             G +   + G   N L   H     +F   L   +  + G  + E   +  D Q +   +
Sbjct: 539  TGYSLEDVKGKTPNILNSAH--HPQSFYQKLWQTLITK-GSWEGEIWNKRKDGQIYPEYL 595

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +I  + NS  + +++IG+  DI+  K+  + +      D+LT +PNR  F  RL   LD 
Sbjct: 596  KISAVKNSQNETIQHIGLFLDISNNKQYEQDLWYKTNYDSLTKLPNRHLFSSRLQQALDT 655

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +  + + +  ++ ID+D +K IN++ G A G+ VL     R+  +L   D +AR+ G+ F
Sbjct: 656  AQ-NTDSQVAILFIDLDHFKFINELHGNAAGNKVLKQSAARLEAVLGPDDSIARIGGDEF 714

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             II     +       A  +  +++ P  +   E  +++S G A +         +L N+
Sbjct: 715  VIIAPQTGSVGT-ELLAKKLSDALSKPFMIGNHETNISSSFGIAFYPEDGQDIETLLHNS 773

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            E AMY AK  G  H + F          R+ +++ L  AV+ SE YL Y P+I + +  I
Sbjct: 774  ETAMYQAKRDGRAHYQYFSPEMNVEMLERMHLEQRLRRAVKQSEFYLEYQPVIDMRNGAI 833

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            + +EALI+W+ P++G IS   F+ IAEE  +I+ +  ++L +   D+     Q  M  + 
Sbjct: 834  ISVEALIRWNDPEFGVISPQAFIPIAEEAGLIEPLGEWILHQALSDLAELHSQGLM--LK 891

Query: 796  ILINIASKDLLDN---ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + IN++ +  +++      + ++  +SK       + +  +ES+++ +  R    L  ++
Sbjct: 892  MAINVSGRQCINSKDVSFYDILKDALSKHAICAKDLHIEITESMLIEDKPRCLQTLESIK 951

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            ++G+ + LDDFGT  S LSYL   P   +K + S +    +      ++++I+ MA+++E
Sbjct: 952  QLGVDIYLDDFGTGYSALSYLTQCPISVIKIDKSFIDNVLNNPSDAKLIKAIVMMAQSLE 1011

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
              ++A+ I      + L  +GCDY Q   ++ PL    +++ L++  P
Sbjct: 1012 MPLVAEGIETVEQWQFLHSLGCDYAQGYLMSRPLTKPQLVEFLQQAKP 1059


>gi|186683707|ref|YP_001866903.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc
           punctiforme PCC 73102]
 gi|186466159|gb|ACC81960.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s) [Nostoc
           punctiforme PCC 73102]
          Length = 720

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/551 (25%), Positives = 267/551 (48%), Gaps = 27/551 (4%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +     +L L    +          IH +D        +      +    YE+R+   
Sbjct: 163 YISFGCLDLLELTPDQILENASLCFAQIHPDDYPGCYAAANESAQTLK-PFSYEWRLVTP 221

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ--------------KKSLEGILCNAF 534
             +  W+    RP    NGDI+ Y G+  D+ E+              K++ E I+ N+ 
Sbjct: 222 SGKLKWVQASARPECRENGDIVWY-GVLLDVNERQVALREQQAALRERKQAQELIIHNSL 280

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR   ++RL   ++ +   +  R  V+ +D+D++K IND LG   GD +L +
Sbjct: 281 HDPLTDLPNRTLLIERLELAINRAKRLETYRYAVLFLDLDRFKVINDSLGHLAGDQLLKN 340

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  ++   L+  D++AR+ G+ F I+L   ++  K       M      P+ L + E+ +
Sbjct: 341 IAHKLKTHLREVDLVARIGGDEFVILLEDISDIEKAIQITERMLIDFQTPLMLNDAEVVI 400

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLC 712
           + SIG    T+    +S++L++A++AMY AK +  N  + F   + +   +R+ I+ D+ 
Sbjct: 401 STSIGIVLGTNEYSQASDLLRDADIAMYKAKAQRRNSYKIFDVKMHTQAVNRLTIETDIR 460

Query: 713 LAVENSELYLVYHPIIRL------MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            A+E  E  + Y PI+ +          ++G EAL++W HP  G +   EF+ IAEE  +
Sbjct: 461 KAIEREEFVIYYQPIVDILGDGQSKAGRLIGFEALLRWQHPTRGLVLPKEFVSIAEETGL 520

Query: 767 IKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           I  I+ +ML +  + +  W+ +     PI + IN++ +D+    L E +  ++++     
Sbjct: 521 IVQIDRWMLYKACQHLADWKVKFATHFPIKVNINLSVQDIRQGNLIEYIDQILAQIGLEG 580

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I L  +ES+++ N  ++  LL +L+   I +++DDFGT  S L+YL  +P D +K + 
Sbjct: 581 DCITLEITESMLIENISQTIDLLSQLKSRKIKISIDDFGTGYSSLNYLHRLPADNLKIDR 640

Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S ++   +      ++ +II ++  +   ++A+ I     ++ L  +GC++ Q    + P
Sbjct: 641 SFVSQMQQGNRNYQVVSTIIALSNQLGLAVVAEGIETPQQLQWLQELGCEFGQGYLFSKP 700

Query: 944 LGFNSILKLLK 954
           L   ++  LL 
Sbjct: 701 LSHQTVEALLT 711


>gi|299067851|emb|CBJ39062.1| conserved protein of unknown function, eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 903

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/575 (24%), Positives = 258/575 (44%), Gaps = 12/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447
            +   + ++ +    ER  LAV    + +         +   P    IL  G  S     
Sbjct: 325 AVQKAHIARELQESEERYRLAVDNLTEGILVQAADGTILACNPSARRILRAGDQSPVGAS 384

Query: 448 PIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            +      +  +  +           +   R  L     +   D    W+   + P+   
Sbjct: 385 HLTLMRRSLREDGSELPFLERPTRVVLTTGRPLLGLTIGLELIDGDVVWVYENVLPIMRP 444

Query: 506 -NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +      +   NDI   + + + +   A +D LTG+ NR  FL R+  +LD + TD   
Sbjct: 445 GDATPSAVLISFNDIGPARAAEQQLKFLAQRDALTGLYNRAYFLQRMQAVLDEAVTDGR- 503

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D +KK+ND  G   GD +L  + +R+   ++  D LARL G+ F ++L   
Sbjct: 504 QAAVLFLDLDGFKKVNDTAGHEAGDHLLRIVAQRLSACVRQTDTLARLGGDEFVVLLDQV 563

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +  +IA P +    E  + ASIG A        ++ +L+ A+ AMY+A
Sbjct: 564 RSLAEAERLARRIIAAIAQPFSTGGTEYYLGASIGIAVHPEHGQDAATLLRCADAAMYNA 623

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F V        R  ++++L  A+   EL L + PI+      IVG E L+
Sbjct: 624 KQNGRNQHRVFTVQLSQRAQRRFQLEQNLRRALSAQELSLRFQPIVDAASMGIVGAEVLL 683

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   + G +S +EF+ +AE+  +I AI  ++L +  R    WR     P  FI +N++ 
Sbjct: 684 RWHSAELGEVSPAEFIPVAEDAGLIIAIGEWVLAQACRQAAHWRRTCA-PDFFIAVNLSP 742

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   +   ++++      +++  +E ++M +      +L  L  +G+ +++DD
Sbjct: 743 RQFGDA-LVPMLSRCLAESGLPACALEMEITEGLLMRDTAAVMPVLDALTALGVRISIDD 801

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S ++G    R +++  R+++ MA +++ T+ A+ +  
Sbjct: 802 FGTGYSSLSYLQRFPIDNLKVDRSFVSGIPRHRDSVVISRAVVAMAASLDMTVTAEGVET 861

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GCD +Q     +P+   +  + L+ 
Sbjct: 862 LAQAEFLLAAGCDKLQGFLFGAPMTAAAYEERLRR 896



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 7/145 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLP 454
            S+ +    +R    V    D ++        V        +LG  ++  + G   +   
Sbjct: 19  ASRPLPFADDRYEALVRQMPDALYIV-ADNIIVFINEAGVRLLGADSASDIVGRELD--A 75

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           ++H +     R   +  V +  G    E  +   D     + I   P+    G       
Sbjct: 76  FVHEDSVQLARQRREWMVEHGAGLPPVEQTLLRCDGTPVDVEILSAPV--QLGWRTAVQV 133

Query: 515 IANDITEQKKSLEG-ILCNAFQDNL 538
           +A DI ++K++ +      A    L
Sbjct: 134 VARDIRQRKQAEQALRESEANYRAL 158


>gi|120598370|ref|YP_962944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120558463|gb|ABM24390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1436

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/561 (23%), Positives = 263/561 (46%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        I         G +  +   ++ 
Sbjct: 876  QKEEQLRLFEKAIENISEGMFILDSEYRFVEVNEACCKISLRNRTDFIGNLLTF--DLYP 933

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                NF + + + +  + GR   E      DN+   M + I  + +  G++  Y+G+ +D
Sbjct: 934  E---NFSSQIRTMLKQQ-GRWANEVEAVRGDNRHFHMELTIDAIYDELGELSHYVGVFSD 989

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LTG+PNR +    L+ ++     +  +  ++MV+D+D +K+
Sbjct: 990  ISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLSNLV-----NKEIAHSLMVLDLDNFKR 1044

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD +L  ++ R+  +L     + RL G+ F I+L   ++    A  A  + 
Sbjct: 1045 INDSLGHQVGDQLLKLVSIRVKSILPKNTSIYRLGGDEFAIVLDKGSDISASAAIAGRVI 1104

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++  M  N+ E ++ +  SIG   +   +     +L+ A++AMYHAK  GGN  + +   
Sbjct: 1105 EAFKMSFNINEEQLVLGLSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNCYQFYSES 1164

Query: 698  -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     ++ I+  +   ++     + Y P I L    + G+EAL++ +HP  G I   E
Sbjct: 1165 LNQHAIKQLEIENLIREGLKEDLFEVYYQPKIDLKRGRVAGMEALVRLNHPVQGLIPPKE 1224

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +       WR+Q       + +N++S+     ++ + +++
Sbjct: 1225 FIPLAEESGLIVEIGEIVLRKACFAAQKWREQGLFNG-RVAVNLSSRQFALPDIQQRIES 1283

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E  V+  PE + +++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1284 ILRLTKLPACHLELEITEGTVIKQPEAAIIVMQQLAKMGVSLALDDFGTGYSSLSYLKRF 1343

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1344 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQTAQLNILRALNCEE 1403

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +  +    LL+ 
Sbjct: 1404 IQGYIFSKAIKESEFTLLLQA 1424



 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +   A     +L+V+ +       +L      + I    ER  L++ GSGD +WDWD
Sbjct: 716 PWWLSTEAKSLYFILLVVSLLIVTKT-ILRRRETQRQIALSEERLKLSLWGSGDEMWDWD 774

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  +    + L            N    IH  D++  R  L+          +  
Sbjct: 775 IETGNIFRSNIWGS-LEFPRDGHRSGKNNEESNIHPMDQERVREALNKHFYGETDHFEAA 833

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           +RV+  D  + W++ R + +  +   + LR  G   +I++ K+  E + 
Sbjct: 834 YRVKGKDENWVWILDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLR 882


>gi|295691059|ref|YP_003594752.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295432962|gb|ADG12134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter segnis ATCC 21756]
          Length = 691

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/560 (24%), Positives = 251/560 (44%), Gaps = 14/560 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               D +R  +A+     +V ++D+    +  +     +             + L  +H 
Sbjct: 140 RAERDEQRLRMALELDDLLVREYDLRTGEIFFSDTAPGL-----RKWCVFKDDPLEIVHP 194

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +DR     ++ S           EFR+   D    W+    +   + +G   + + +  D
Sbjct: 195 DDRQQCADVIASRKVGEARVF--EFRLNRDDGVETWIRAVGKVFVDQDGQPEKLVNLFKD 252

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++++  E I   AF+D LTG+PNR  F  R    +  ++        +++ID+D +K 
Sbjct: 253 ITDRRRQTEAIETLAFKDPLTGLPNRALFQHRFNEAVS-ASETLGEMFGLIMIDVDHFKD 311

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L  L   +    +  D +ARL G+ F +IL        +      ++
Sbjct: 312 INDTLGHDAGDVLLKRLAGMLRRAFRSGDTVARLGGDEFAVILRGLRGEADMMRPIQKLQ 371

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  PI    R  T TASIG A     +   + M+KNA++A+YHAK  G N    F  +
Sbjct: 372 ELLQRPIEYAGRSFTATASIGAALHGDPEADPAHMIKNADIALYHAKEAGRNRSIVFEPA 431

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   ++   D+  AV  +E  L Y P++ + +  +VG EAL++W HP+ G ++   
Sbjct: 432 MRTELERRVELLRDVRAAVAANEFTLFYQPVVDIRERRVVGFEALMRWIHPEQGVLTPGH 491

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           FM   E+  +   +     E+  R + +W DQ       I +NI++       L E +Q 
Sbjct: 492 FMAAFEDQELSLRLGDLAFEQSLRQMRAWLDQGVEFG-RIAVNISAAQFRSGRLAEEVQE 550

Query: 817 LISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +++     +R+ +  +E+V MG   +     + RL   G+ + LDDFGT  + L+ L  
Sbjct: 551 RLARWNVPCARLTIEVTENVYMGWGSDLVSGNISRLHAAGVMIALDDFGTGYASLANLRQ 610

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P D +K + S +     +  AI++++I +  ++   ++A+ +     +  L R GCD I
Sbjct: 611 FPIDRLKIDKSFVQN--AEDEAIVKAVITLGASMGMKVVAEGVEDPDQLAALIRYGCDQI 668

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  H   P+    +   L+ 
Sbjct: 669 QGYHFGKPMPAEEVAGFLER 688


>gi|89092006|ref|ZP_01164961.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083741|gb|EAR62958.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 1250

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 148/573 (25%), Positives = 277/573 (48%), Gaps = 10/573 (1%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                  + +    +R  +A   + D++++WD+  D +    DI  +LG   GS+   I  
Sbjct: 552  ELKNIEKALRISEQRFKIAGEAAYDLIYEWDVETDSLHWFGDIDDLLGYPKGSISQDISA 611

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            WL  IH  D+D     ++         ++YE+R++     + ++     P+ + N    R
Sbjct: 612  WLNLIHPEDKDLLGDAVERH-RTSTQPIKYEYRIQHKKGHYLYLSDHALPLLDENRRPYR 670

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +IG+  DIT QK+    +  NA+ D LT +PNR    DRL+  +            V+ I
Sbjct: 671  WIGVCTDITTQKEQQLLLEFNAYHDKLTNLPNRVLLADRLSQAMHQQKRRGQT-LAVVYI 729

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D +K+IND  G  VGD +LV + +R   LL+  D +ARL G+ F  +++  N+S+   
Sbjct: 730  DLDGFKQINDQYGHDVGDVLLVEIGQRFQTLLREGDTIARLGGDEFVAVMLDINSSMDSI 789

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGN 690
                 +  +I++P+ + +  + V+AS+G   +  ++     ++L+ A+ AMY AK  G N
Sbjct: 790  PLLRRILHAISVPVLVDDVVLQVSASLGVTFYPQAEDVDGDQLLRQADQAMYQAKLEGKN 849

Query: 691  HVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                F +   RS R   +    + L +   E  L Y P + +   +++GLEALI+W+HP+
Sbjct: 850  RYYFFDMEHDRSLRGQRETVERIELGLRQREFELYYQPKVNMHSGDVIGLEALIRWNHPE 909

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G +   +F+ + E+  +   I  +++E   R + +W  Q +   + + +NI    L  +
Sbjct: 910  DGLLMPGQFLPVIEDKPVAIEIGEWVIEDALRQMDAWSFQGHD--LSVSVNIGGLQLQQD 967

Query: 809  ELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E ++AL+ K    +   ++L   ES  + + +    ++ R  ++G+S +LDDFGT  
Sbjct: 968  NFVERLEALLKKFPRVASECLELEVLESSALQDIQLVSKVMQRCNELGVSFSLDDFGTGY 1027

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S L+YL  +P   +K + + +         +AIL  ++ M+      +IA+ +      +
Sbjct: 1028 SSLTYLKSLPAANLKIDRTFVRDMLDDPDDLAILEGVVGMSTAFRRGVIAEGVEEIAHGE 1087

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             L ++GC+  Q   +A P+    I   +    P
Sbjct: 1088 MLIKLGCNLAQGFAIAKPMKAALIPDWISSWNP 1120



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 5/142 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + Q +       + +    ++    +      ++  D     +     +  + G A  
Sbjct: 418 LVIAQDITEIVEAQRQLEISEKKFRTILDSVDAYIYLKDKAGHYLFANRKVRELWGAAME 477

Query: 444 SMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G   + +    H           D  V      L+ E                  P+
Sbjct: 478 DIVGFGDDKFFD--HPT--AKNIQHNDRLVLDDGQTLKVEEVNTLPGGGTTTYQSTKLPL 533

Query: 503 SNSNGDILRYIGIANDITEQKK 524
            + +GDI    GI+ DITE K 
Sbjct: 534 RSEDGDIYALCGISVDITELKN 555


>gi|330812674|ref|YP_004357136.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380782|gb|AEA72132.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 946

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/578 (24%), Positives = 264/578 (45%), Gaps = 8/578 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +         S+ +    +  +     + + +  +D     +        + G   
Sbjct: 369 RVLRMVGTRRDISASKELEQQRQLAATVFEAASEGIVIFDPHYVLLAANQAFTRVTGFNI 428

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G     LP     D      I+   +    G  Q E     A+ + +   +++  +
Sbjct: 429 DEMLGRNVVDLPC--SRDARRHYPIIRQALKQ-HGTWQGELVEARANGELYPQWLQLNVV 485

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            N+ G++   +G   D++ +++S E +      D LTG+ NR  F +RL           
Sbjct: 486 RNARGNVSHIVGFFADLSARRESEERMRYLTHYDELTGLANRSLFRERLHEAHQRVRQGG 545

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ I++D++K +ND LG  + D +L  + RR+   L   D +ARLSG+ F ++  
Sbjct: 546 RRSLALLHINLDRFKLLNDSLGHDIADQLLQKMARRLINALPEADTIARLSGDEFAVLFD 605

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  N   +A  A  +   + +P+ +   E+ ++ASIG +    +    + ++  A +AM 
Sbjct: 606 AYGNLSSLARVATRLAAKLRVPLTIEGHELVLSASIGISLLPDNTREVAMLVSQANMAMQ 665

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAKH GGN+ + +  S   S   R+ ++  L  A+E  +L + Y P + L    +   EA
Sbjct: 666 HAKHLGGNNFQFYTDSLQASTLERLQLENQLRKALEEQQLKVFYQPKLCLATGRLNAAEA 725

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++WDHP  G +   +F+ +AEE  +I  I  F+L +       W+ Q    PI + +N+
Sbjct: 726 LVRWDHPAMGRVPPGDFIGLAEETGLIGPIGEFVLRQACWQACEWQRQGL-APIRVSVNL 784

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L   ++ ++ +T   P  ++L  +ES ++ + E       +LR +G+ L +
Sbjct: 785 SVHQLRQGKLVSLVRQVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAI 844

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  IP D VK + + + G  E     AI R+II MA  +   ++A+ +
Sbjct: 845 DDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGSVDAAITRAIIAMAHGLSLKVVAEGV 904

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  ++ L    CD +Q   ++ P+    +  LL+ +
Sbjct: 905 ERQEQLEFLRNERCDEVQGYLISRPVEAEGLAGLLRAQ 942



 Score =  133 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 122/386 (31%), Gaps = 43/386 (11%)

Query: 185 VNSFTLYRGIIIGVASLLA---IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
             +  LY+G ++    +L    +   + +   R    + +  + W++           + 
Sbjct: 17  ERTRLLYQGSLLPTLFMLLNGLVCAALLWEPRR--YFLVSVWLVWLLSLVALRVIQVAAF 74

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
             +                L S++                  +   + +  +     +S 
Sbjct: 75  D-SAMPSRQAHPIWLRMFLLGSAMTGLTLAGAGIAL-VPADSFQQQAWVFGLIGAAALSA 132

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
                 +  A ++     L     I Y    G E+        +++ +    +   + + 
Sbjct: 133 SVAYAVSLPAFLSFTLPCLL--PAIGYLFWGGDEQQRGWGWLGLIVLVSLSVVAWQVNRL 190

Query: 362 LDNDII------------QPALVGGLVLIVIL--------------------IGFTVIQH 389
           + + ++            Q A   G  L   L                    +   V Q 
Sbjct: 191 IQSGLLRRFQNQALIEHLQQAQTRGAQLNDALAREVEQRRSAEEKLRAAQVGLEARVAQR 250

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            L     SQ +     R +LA+  S   +WDW++  D V  T  +  + GL    +   +
Sbjct: 251 SLELEVASQALSKSEARLALALKASELGLWDWNLQTDEVHHT-QLKELFGLEPEYITAML 309

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508
            +  P +H  D    +  L   +  R    Q E+RVR  D  + W+  R R +  + +G 
Sbjct: 310 THLTPRLHPQDLPALKRALVEHLKGRSEDYQIEYRVRHGDGHWVWIEDRGRAVERSVSGR 369

Query: 509 ILRYIGIANDITEQKKSLEGILCNAF 534
           +LR +G   DI+  K+  +     A 
Sbjct: 370 VLRMVGTRRDISASKELEQQRQLAAT 395


>gi|294632536|ref|ZP_06711096.1| sensory box/GGDEF family protein [Streptomyces sp. e14]
 gi|292835869|gb|EFF94218.1| sensory box/GGDEF family protein [Streptomyces sp. e14]
          Length = 713

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/575 (23%), Positives = 260/575 (45%), Gaps = 18/575 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448
           + A G  +Q + +   R      G+   +   D+  + +     +  + G +  +M G  
Sbjct: 138 LRAQGVVAQALHASEARFRAVFEGAAIGIGIADLEGNILQVNGALLRMFGGSEQTMRGRK 197

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           ++ W    H  D      + +  V   R     E      D    W  + +  + +++ +
Sbjct: 198 VQEWT---HAEDAPQIWRLYEELVRGEREHYHVEKAFYRPDGTVLWTNLTVSLLRDADNN 254

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + +  D TE++     +   A  D LTG+PNR  F +RL   L+   + +  R  +
Sbjct: 255 PQYQLALMEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKTLN---SGEGRRFGL 311

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627
             +D+D +K IND LG A GD +LV +  R+        +++ARL G+ F  +    ++ 
Sbjct: 312 CYLDLDGFKTINDSLGHAAGDRLLVEVADRLQSCATAPGEMVARLGGDEFVALTTGPDSR 371

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ + A  +  ++  PI +  RE+TV  SIG       + +++E+L++A++ MY AK  
Sbjct: 372 REVDELAARIMNALVAPIRIDGRELTVRGSIGVVEGPVGERSAAEVLRSADITMYRAKSA 431

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN  E     +         +   L  A++  E ++ Y P++RL D  + G EAL++W 
Sbjct: 432 GGNRFELADPEADARAITRHGLTTALPAALDRGEFFIEYQPLVRLGDGSVRGAEALVRWL 491

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP---PIFILINIAS 802
           HP+ G +    F+ +AE   +I  +  +++E+  R    WR+         + I +N++ 
Sbjct: 492 HPQHGVLGPDRFIPLAEHTGLIVPLGRWVMEQSVRQAGKWRELYGDGAEGSLRINVNLSP 551

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L    L +    ++ +T  +P  + L  +ES ++G  +     L RL ++G+ + LDD
Sbjct: 552 CQLQHPGLVQDTVDILERTGVAPDALCLEVTESALIGADDDVLKPLHRLAEMGVDIALDD 611

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKD 917
           FGT  S L+ L  +P   +K + S              + I+  I+ +A +++  +  + 
Sbjct: 612 FGTGYSNLANLRRLPVSVLKLDRSFTRSMQQFPADPVDLKIVEGIVALAHSLDLAVTVEG 671

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +      ++L  +GCD  Q  + A P   + + +L
Sbjct: 672 VETGAQAEQLRILGCDTAQGWYYARPGPPDRLHEL 706


>gi|285017582|ref|YP_003375293.1| two-component system sensor protein [Xanthomonas albilineans GPE
           PC73]
 gi|283472800|emb|CBA15305.1| hypothetical two-component system sensor protein [Xanthomonas
           albilineans]
          Length = 716

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 146/584 (25%), Positives = 275/584 (47%), Gaps = 25/584 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +        +    +D ER+  +  +    + V   D  R  ++  P    I G +   +
Sbjct: 146 RLAGTARDITSHRQADLERRIAAEVLRSMSEAVAVLDEERRFISVNPAFTRITGYSEREV 205

Query: 446 HGPIRNWLPY---IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            G     + +   +               +   R   + +   R  D       +R   +
Sbjct: 206 LGQPMTLIDHAPNVPP----------PPMLDQGR-HWRGDAWKRRKDGHEILCHMRRNTV 254

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +++G     + +  DITEQK++ + +   A  D LT +PNR    +RL   +  +    
Sbjct: 255 VDADGRQSFQVVVLEDITEQKRAEQELRYLANYDTLTSLPNRALLSERLARAIVRARRQA 314

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V+ +D+D++K IND  G  VGD VL ++  R+ + +     +ARL+G+ F +++ 
Sbjct: 315 GA-VAVLFLDLDRFKDINDSQGHPVGDQVLRAVAERLQQAVGPQHTVARLAGDEFTVVVE 373

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +  +    A  +  +   P+ L +R E+ V+ SIG + +    +  SE+LK+A+ AM
Sbjct: 374 DIVSQDEAESVAARVLAAFEPPLRLDDRREVAVSTSIGISLFPQHALLPSELLKHADTAM 433

Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G  + + +   +      R  +   L     + EL LVY P   L ++ +V +E
Sbjct: 434 YQAKAAGRRNAQVYSASMDEATRHRATLASTLRKIPLDQELKLVYQPRYSLREQRVVSVE 493

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W    +G +S S+F+ +AEE  +I  I  ++L +    +  WR Q  +  + + IN
Sbjct: 494 ALLRWHSADFGPVSPSQFIPLAEETGLILQIGEWVLRQACSALRDWR-QMGLTDLCMSIN 552

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++  L  + L E M  ++++T    + ++L  +ESVVM    +S  +L   R++G++L 
Sbjct: 553 VSAIQLERSNLPELMAQILAETGVPAANVELELTESVVMSQVGKSAEILHACRELGLTLA 612

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL  +P +T+K + + ++         +I  +II M  +++  ++A+ 
Sbjct: 613 IDDFGTGYSSLAYLKRLPINTLKIDQAFISDLSLDPDDASITSTIIAMGHSLDLKVVAEG 672

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE--RFPL 959
           +     +  L   GCD IQ   VA  L  ++ LKLL++  R P+
Sbjct: 673 VEQPSQLMFLREHGCDEIQGHLVAPALEPDACLKLLQQPLRLPI 716



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 18/175 (10%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +  A+ G  V +  L+    +Q  L      + +        LA+  SG+  WD+D+   
Sbjct: 4   LSLAIGGLTVALHALLYRRRMQQKLKCY---EELQQHEHYLKLALWASGEHFWDYDLQNR 60

Query: 427 RVT------TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            +         P +  I      ++     + L  IH +D    +  L   +        
Sbjct: 61  TLRRMRADDANPHLQDI------ALVIHEDDPL-RIHPDDIQQAKLALSEHLEGLTAIYL 113

Query: 481 YEFRV-RAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            E+RV    D  + W  +R R +  ++ G+  R  G A DIT  +++       A
Sbjct: 114 AEYRVDLTGDGVWRWARVRGRVVDYDAVGNPRRLAGTARDITSHRQADLERRIAA 168


>gi|157962414|ref|YP_001502448.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella pealeana ATCC 700345]
 gi|157847414|gb|ABV87913.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella pealeana ATCC 700345]
          Length = 1436

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 129/561 (22%), Positives = 265/561 (47%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        +  ++   + G + N+   ++ 
Sbjct: 873  QAEEQLRLFERAIQNISEGMFILDRNFKFVEVNEACCDLSMMSKNELIGTLFNF--DLYP 930

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   ++   + S +  + GR   E      +     M + +  + +  G++  ++G+ +D
Sbjct: 931  D---SYSEQIRSILKQQ-GRWNNEVESIRGNGSSFLMELSVDAIYDEQGELSHFVGVFSD 986

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            ++ +K+  E +      D LT +PNR + +  L  ++       +   T+MV+D+D +KK
Sbjct: 987  VSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1041

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG   GD++LV ++ RI   +     + RL G+ F I++    +    A  A  + 
Sbjct: 1042 INDSLGHQAGDELLVQVSERIQVAVPSHTSIYRLGGDEFAILVDKNPDIGTSAIIAKNVI 1101

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +      L   ++ V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1102 HAFEASFELSSEKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1161

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              ++    ++ +  +   +++    + Y P + L    + G+EAL++ +HP+ G I+ +E
Sbjct: 1162 LNKNAIRQLEVENLIRDGLKDDLFEVYYQPKVDLKTGHMAGMEALVRLNHPELGLIAPNE 1221

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L++       WR Q       + +N++SK     +L + +++
Sbjct: 1222 FIPLAEENGLIVEIGDVVLKKACFAAQKWRSQGLFNG-RVAVNLSSKQFALPDLQQRVES 1280

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1281 ILRLTQLPAANLELEITEGTVIKEPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1340

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1341 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILRALKCEE 1400

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    + P+  +    LL++
Sbjct: 1401 IQGYIFSKPVTESKFTLLLQQ 1421



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 3/169 (1%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +   A    L+  +  I   +I+ +L      + I    ER  L++ GSGD +WDWD
Sbjct: 713 PWWLSITAKFIYLLCFIF-ISILIIKTILRRREIQRQIAKSEERLKLSLWGSGDEMWDWD 771

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I   ++  +    + L                 IH  D++  R  L+          +  
Sbjct: 772 IETGQIYRSNIWGS-LEFPQDGQRSGNNGEESNIHPMDQERVREALNKHFYGETDHFEAA 830

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
           +RV+   N + W++ R + +  + N + LR  G   +I+  K++ E + 
Sbjct: 831 YRVKGKSNDWVWILDRAKIVERDENDNALRMTGTIKNISNFKQAEEQLR 879


>gi|192359360|ref|YP_001982537.1| sensory box protein [Cellvibrio japonicus Ueda107]
 gi|190685525|gb|ACE83203.1| sensory box protein [Cellvibrio japonicus Ueda107]
          Length = 844

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/575 (23%), Positives = 247/575 (42%), Gaps = 13/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +         +    E     +     ++   +I    +     +A  LG     M    
Sbjct: 263 LAKRRAVELALRKSEEHLRQIIDHLPVMIGARNIAGYYLFANKALANELGYTPEQMRNLH 322

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L    + D D         +         E R   A  +  ++   I P++  +  +
Sbjct: 323 VRQLLKNSVFDIDTMLQNDYRVIRGNEELDVIEERFITASGKQLFLQTHIMPLAFYDEKV 382

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  DITE+K +   +   A  D LTG+PNR   ++RL   L  +         V+
Sbjct: 383 ALIVSV--DITERKNAQAKMEFMAHHDALTGLPNRVQLVERLEHELRRAERH-GYYGAVL 439

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----E 624
            ID+D++K IND LG  VGD VL  +  R+ + ++  D++ARLSG+ F ++L       E
Sbjct: 440 FIDLDQFKNINDSLGHPVGDKVLEVVATRLQQSVREEDLVARLSGDEFVVVLTVLDQNME 499

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +L+  + +  +R  I+ P      E+ VT S+G   +     +  E+L+ A+ AMY  
Sbjct: 500 TAALRAGEISEKIRSIISQPYVYDSMELRVTCSVGVVVYPDKNNSVHELLRYADTAMYQV 559

Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G + +E F           +  + DL  A+E  +  L Y P + ++   +VG EAL+
Sbjct: 560 KEKGRDSIEFFNEEMADKVSRQLVMEGDLHRALEEGQFELYYQPKMDVISSRVVGAEALL 619

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIA 801
           +W HP  G +S  +F+ + E   MI  +  ++LE   + ++ W +Q      + + INI+
Sbjct: 620 RWKHPTKGMVSPVDFIPVLETSGMIIDVGQWVLEDACKTLVKWSEQGLWHEGMKLSINIS 679

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +        + +   I +    P+ + +  +E +V+   E +   +  L   GIS +LD
Sbjct: 680 PRQFRRAAFVQDVIDTIERFPIPPNSLDMEITEGIVIQRVEDAIATMTLLSDKGISFSLD 739

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +SYL  +P  T+K +   +           ++ +II M   ++  ++A+ + 
Sbjct: 740 DFGTGYSSISYLKRLPVSTLKIDQGFVRDIIVDRNDRVLVETIITMGNLLDMELVAEGVE 799

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               +  L   GC + Q    + P+       +L+
Sbjct: 800 EAEQLAILKAFGCHFYQGYLFSMPVELAVFESILR 834


>gi|229136697|ref|ZP_04265356.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228646767|gb|EEL02943.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 797

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 160/760 (21%), Positives = 306/760 (40%), Gaps = 32/760 (4%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           IF++           +  + ++  + +  G                     +    ++  
Sbjct: 53  IFFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLYIFIIVLAGLAITD 108

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY---------YPMVTASIARITLASI 318
           +L+ YL  +  +  V  +       +  +   +           Y ++  +  +  L   
Sbjct: 109 YLYFYLQDDLSNRSVILLRCLYRVFLLFIAIAAAIPKNASSRRNYFIIDPTFGKKLLVIF 168

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I    K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 169 PYLAVTILIGFTFKEQTSSATLITGNCIAFVFVLIRHTIVRMQNRD------LTEMLKVF 222

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   D     +      + +L
Sbjct: 223 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQAGSMLL 282

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII- 497
           G  S  + G            DR      L          LQ   RV+  + +       
Sbjct: 283 GKNSDELIGKEC--FSIFLDEDRSELEAALKQGKRCSSASLQL--RVKNNNGKDIHFWYV 338

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I P+    G       +  DIT+ ++  + I   AF D +T I NR  F   L   ++ 
Sbjct: 339 TIVPIM-IEGQPFGSYVMVKDITKMRQQQDEINYLAFHDTVTKIGNRTFFQQELEKSIER 397

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +    +    ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F
Sbjct: 398 AQKTQD-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEF 456

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            II+ + ++  ++ D    + +    P  + +    ++ SIG A +       + +L++A
Sbjct: 457 AIIVHN-HSEQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGTNITTLLQHA 515

Query: 678 ELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY+AK +G N V  +    S   + R+ +++DL  A+EN EL+L+Y P +     ++
Sbjct: 516 DIAMYNAKKKGNNAVCMYDETLSKRITRRLRLEQDLPNALENDELFLLYQPQVDSKTGKV 575

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EALI+W HP  G IS  EF+ IAEE   I  +  ++L+   R +  W        + 
Sbjct: 576 IGAEALIRWQHPGLGLISPFEFIPIAEETSQIIPVGKWILQEACRQLKKWHSA-GYANLK 634

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + IN+++ +    +  + +++ I       S I L  +E + M + + +   L  L+  G
Sbjct: 635 MGINLSAIEFEQKDFVQTIKSTIEGVGVPASSIDLELTERIAMVDEKETLSKLKVLKSYG 694

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           + L++DDFGT  S L+YL   P DT+K     +     +     I+ +II +A  ++  +
Sbjct: 695 VHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFINRIGTSNDGNEIINTIISLAHTLKMKV 754

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           IA+ +  +  +  L R  C  IQ  + + PL  +  +K L
Sbjct: 755 IAEGVETKEQLTVLQRNECYLIQGYYYSKPLNEDEFIKFL 794


>gi|330957433|gb|EGH57693.1| PAS:GGDEF protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 757

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 155/716 (21%), Positives = 294/716 (41%), Gaps = 56/716 (7%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           W     + +    A    L  +S Y  +V         A         +IY  ++G+   
Sbjct: 54  WEPIARFGSSCPEADETWLRMVSSYGDVVLVGQDSPASAIDRSAGGRTLIYVAIRGFR-- 111

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
                         +G  +       + +             ++      +         
Sbjct: 112 -----------HELLGAMLLSNSSPQSGLSPAQRYALQAQAALVRTHLQPEREHEASNPL 160

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVR------DRVTTTPDIATILGLASGSMHGPIRN 451
            G F         V+ + D +   D           V   P    I G     + G    
Sbjct: 161 VGSFERLRLLESVVINANDAILITDAEPIDLPGPRIVYCNPAFLAITGFTEDEVIGRTPR 220

Query: 452 WLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            L      D       ++   + + R  ++ E      D    W+ + I P++N  G   
Sbjct: 221 ILQC---EDTSRETLDVIREALTHWR-PVEVELLNTRKDGSQFWVELSIVPVANEKGWFT 276

Query: 511 RYIGIANDITEQKKSL--------EGILCNA-------------------FQDNLTGIPN 543
            ++ +  DITE+K+S         E     A                   F D LT + N
Sbjct: 277 HWVSVQRDITERKESQQLTQRARQEREEKLALQSRLEERERISEALAYVAFHDELTSLHN 336

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R   ++ LT   +        R TV+ +D+D +K +ND +G   GD +L  +  R+   +
Sbjct: 337 RAYLMNELTRAFETLDPRYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKGVANRLQMCV 395

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D+LAR+ G+ F I+L+ ++        A  +   +   + +  ++I ++ SIG  + 
Sbjct: 396 RSNDVLARIGGDEFAILLMGKDQPDTAVKMAERIVSQLHTALQIEGQDIFISCSIGIVTA 455

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELY 721
             S     E+L++A++AMY AK +G      F  S      D ++I+  L  A+E+ +  
Sbjct: 456 GESHTKPEELLRDADVAMYSAKKQGRGRWSIFNASMREAAIDTLVIQNALRQALEDKDFL 515

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y PI     E +VG+EAL++WDH   G IS   F+ IAE+L +I  +  +++ R   +
Sbjct: 516 VFYQPIYSGSSEHLVGVEALVRWDHASMGIISPEAFIPIAEDLGIIHELGAWVMHRSCSE 575

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           + +WR   +   + + +N++ K+L      E +  +I+ T    +++++  +ESV +  P
Sbjct: 576 VQAWRKAFSHLDLRLSVNVSGKELSHPGFVEQVTRIIASTGLPATQLQIEVTESVFLYQP 635

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAIL 899
           +    +L ++R++G+ + LDDFGT  S L Y+   P D VK + S ++     E+  AI+
Sbjct: 636 DAIAEILRQIRQLGVRVALDDFGTGYSSLGYIDRYPIDAVKIDRSFVSRMMTYERSEAIV 695

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            SI+ + + +   I A+ +        L ++GC Y Q   +  P+   ++L++++ 
Sbjct: 696 SSILSLGRALNLDITAEGVETAEQYNRLRKLGCPYFQGYLLNRPMRSEALLRIIRS 751


>gi|115524343|ref|YP_781254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115518290|gb|ABJ06274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 834

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/564 (23%), Positives = 258/564 (45%), Gaps = 22/564 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGP--IRNWLPY 455
            +        L    +   +W +D      +          G +  +  G      W   
Sbjct: 277 SLKRREASFRLLFDNNPMPMWVFDAATTRFLKVNDAAVRHYGFSRSAFLGMKLPEIW--- 333

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              ++R+     L              +R   AD     +I   R ++        ++  
Sbjct: 334 -PADEREAHLHALQQA--GDNYLSDRNWRHLKADGSEIEIIAFGRRVAFE--RSDGFLVA 388

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+TE++K+   I   A  D LT +PNR  + +RL   L+  A        V+ +D+D 
Sbjct: 389 IVDVTERRKAEARIAHMAHHDGLTNLPNRSFYQERLQHALE--ARPAECHVAVLCVDLDL 446

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  VGD +L  +  R+   ++  +++ARL G+ F I+L+S  +  + +DFA 
Sbjct: 447 FKNVNDSFGHPVGDRLLQLVAERLRLEVRGANMVARLGGDEFAIVLVSVVSPNEASDFAA 506

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +++P ++   E+ + ASIG A          ++L+NA++A+Y AK  GG +   F
Sbjct: 507 RVIERLSVPYDVDGLEVVIGASIGIALSPGDGDNGEDLLRNADMALYRAKESGGGNHHFF 566

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +      R  ++ DL  A    +  L Y P++ +  + + G EAL++W HP+ G IS
Sbjct: 567 EKEMDRQAQKRRDMEIDLRYAFAKGQFELYYQPLVDVARDRVAGFEALLRWRHPERGMIS 626

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AE++ +I  +  ++L +   +  +W  +     I I +N++        L + 
Sbjct: 627 PADFIPVAEDIGLIVGLGEWVLRQACAEAATWPSE-----IKIAVNLSPVQFRSRNLVQA 681

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   ++++  SP R++L  +ESV +   E +   L ++R +G+ +++DDFGT  S LSYL
Sbjct: 682 VIGALAQSGLSPRRLELEITESVFLAETEANLATLHQMRDLGVRISMDDFGTGYSSLSYL 741

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +         +AI+R+I  + +++  T  A+ +  +  +  L   G
Sbjct: 742 RSFPFDKIKIDRSFVQDLAQRPDCLAIVRAIAGLGRSLNITTTAEGVETQAQLDWLREEG 801

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+ +Q    +       I  L+  
Sbjct: 802 CNEVQGFLFSPARPAGEIAALIAR 825


>gi|17548475|ref|NP_521815.1| hypothetical protein RS03712 [Ralstonia solanacearum GMI1000]
 gi|17430722|emb|CAD17405.1| probable signal transduction eal-ggdef domains transmembrane protein
            [Ralstonia solanacearum GMI1000]
          Length = 1178

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 142/584 (24%), Positives = 257/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D  +     V   P    +
Sbjct: 604  VALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADAQQPDLPLVYVNPGFERM 659

Query: 438  LGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G  +  + G    +L          +  R  L          ++   R    D      
Sbjct: 660  TGYRAEEVLGRNCRFLHSSEPGQPALNEVRAALRDASE-----IRVLLRNFRKDGHAFLN 714

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ +S G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 715  NFLLSPVRDSQGAVTHYVGIQDDVTEQEMTRARLAQHATVDPLTGLPNRTLLADRVQQGV 774

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +I+ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 775  EMAAR-QRSRFYVALINIDRFKVVNDSLGHLLGDEVLRRIAERLRDAADTVDTVARFGGD 833

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A PI +   E+ VTASIG A + +    S  +++
Sbjct: 834  VFALVISHAGSHGTDLGF-----DLFAEPIRVEGHEVFVTASIGVAEYPAHGSDSETLVR 888

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY AK  G N +E F        S R+ ++  +  A+E  +  L+Y P I     
Sbjct: 889  HAEMAMYFAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDTKTG 948

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             I GLEALI+W HP  G +  + F+ +AEE  ++  I  ++L   A+   +W  +     
Sbjct: 949  RICGLEALIRWIHPTRGLLPPAAFIPVAEESGLVVEIGNWVLAEAAQQRAAWHARGLGED 1008

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + I +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1009 LTIAVNVSPLQFKRGTVLPTLLRLQRQHGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1068

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1069 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1128

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL   ++  LL+ 
Sbjct: 1129 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 1172



 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 6/165 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            GG    + L+  T  +   A     + +    ER       + D ++DWDI        
Sbjct: 333 QGGARDELSLLERTFNEMRTAILRHDETVHHLTERFQRVARATNDWIFDWDIATGESWAN 392

Query: 432 PDIATILGLAS------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +  +LG  +               +  ++H  D   F   L + +   R    +  RV
Sbjct: 393 ASLHRLLGSDALLAQGDEDGVSRTLTFQQFVHPEDMAAFGRGLRAALHSDRDAWHHVCRV 452

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             A      + IR       +G  +R +G   DI+++      + 
Sbjct: 453 IDASRAVRTVEIRASIYRGKDGRAVRMVGGVTDISQRSAMEADLR 497



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +      +A   +    W WD++RD  T +  +  + G++ G        
Sbjct: 488 QRSAMEADLRASEANLRVAEQIALLGSWRWDVLRDTATWSSGMYLLTGVSPG-PPPSFAQ 546

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 547 QAQFFTGDSYNRLREAASRAVTE-GVPYSLELEMIRRDGEHRWVLSRGNIERNEREEVVA 605

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 606 LFGTMQDITERRESDEQLRLL 626


>gi|331015153|gb|EGH95209.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 674

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%)

Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453
             ER  L    V+ + D +        D+     V   P    I G     + G     L
Sbjct: 80  SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 139

Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 D       ++   + + R  ++ E      D    W+ + I P++N  G    +
Sbjct: 140 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 195

Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545
           + +  DITE+K                           +  E +   AF D LT + NR 
Sbjct: 196 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 255

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             ++ L             R TV+ +D+D +K +ND +G   GD +L  +  R+   ++ 
Sbjct: 256 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 314

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   
Sbjct: 315 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 374

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
                 ++L++A++AMY AK +G      F  S      D ++I+  L  A+EN +  + 
Sbjct: 375 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 434

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI     E +VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   D+ 
Sbjct: 435 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 494

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +WR       + + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+ 
Sbjct: 495 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPAAQLQIEVTESVFLYQPDA 554

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
              +L ++R +G+ + LDDFGT  S L Y+   P + VK + S ++     ++  AI+ S
Sbjct: 555 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPINAVKIDRSFVSRMMTYDRSQAIVSS 614

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ + + ++  I A+ +        L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 615 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 668


>gi|329902598|ref|ZP_08273159.1| signal transduction protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548706|gb|EGF33349.1| signal transduction protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 496

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 143/496 (28%), Positives = 249/496 (50%), Gaps = 7/496 (1%)

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                 +G  Q E      +   +   + +  + ++ G I  +I ++ DI+E+K S + I
Sbjct: 2   RHATTVKGSWQGEVWFNRKNGIAYPAWLVMNAVRDAGGVITHFIAMSLDISERKASEQRI 61

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR S  +RLT  +  +   ++ R  V+ +D+D++K IND LG  VGD
Sbjct: 62  HYLAHHDALTGLPNRFSCDERLTLSIQQARRQND-RVAVLFVDLDRFKNINDSLGHHVGD 120

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK-SIAMPINLL 648
            +L S+  R+G  ++  D ++RL G+ F +IL + +   +I          ++  P  + 
Sbjct: 121 QLLCSVAARLGAAVRDGDTVSRLGGDEFIVILNNIDQVEEIGKLIERRLMPAVCEPHCIE 180

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706
             E+ V+ SIG A +     T   + ++A+ AMY AK  G N+ + F    +   +  + 
Sbjct: 181 SAELYVSCSIGVAVYPDDSDTIGGLKRHADSAMYQAKKLGRNNAQFFTPALNERVTRHLH 240

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ DL  A    EL L Y P I      + G+E+L++W HP  G I+ + F+ +AEE  +
Sbjct: 241 LESDLRHAAGRDELVLHYQPRIDARSGRLAGVESLVRWQHPVEGLIAPALFIPLAEESGL 300

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  + +    R   +WR Q     I + IN+++  L D++L   + A I++    P 
Sbjct: 301 IVGIGAWTIREACRQHQAWRLQGLG-AIPVSINLSALQLRDDDLLAVLAAAITRYDVPPG 359

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           +I+L  +ES++  N + + +LL RL+ +G SL++DDFGT  S L+YL   P D +K + S
Sbjct: 360 QIELELTESLLTENVDATIVLLKRLKTLGFSLSIDDFGTGYSSLNYLVRFPIDKLKIDRS 419

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +          A+ R+II +   +   ++A+ +    D++ L   GCD  Q  H A P+
Sbjct: 420 FVKDMHSSAANLAVTRAIIGLGHTLGLAVVAEGVELASDVQALLEAGCDEFQGYHFARPM 479

Query: 945 GFNSILKLLKERFPLV 960
               ++  L    P+ 
Sbjct: 480 PAAQLVAWLGRHTPVA 495


>gi|71278233|ref|YP_271340.1| sensory box/GGDEF family protein [Colwellia psychrerythraea 34H]
 gi|71143973|gb|AAZ24446.1| sensory box/GGDEF family protein [Colwellia psychrerythraea 34H]
          Length = 682

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 136/552 (24%), Positives = 244/552 (44%), Gaps = 9/552 (1%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
                 + + +   D      T     + I G +   + G     L      D+  ++  
Sbjct: 119 EQIFDHTNEAIIVTDNQGLIQTVNKSFSNITGYSEEEVIGKTPAILNS-GKQDKYFYKKF 177

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               +    G  Q E   +  + + +   + I  + N    I  YI    DIT +KKS E
Sbjct: 178 WQQIIDQ--GSWQGEIWNKRKNGEVYPEWLNISSIRNKESQISNYICQFTDITNRKKSEE 235

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  +A+ D+LT +PNR    ++L  +  L          V+  D+D++K IND LG  V
Sbjct: 236 ELHFHAYHDSLTSLPNRHLLFEKLNHLCVLHQEQPTY-FAVLFCDLDRFKMINDSLGHDV 294

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L S+  R    L+  DI+AR  G+ F +++  E     +    + +     +P   
Sbjct: 295 GDELLKSVANRFEAKLRDNDIIARTGGDEFIVVIEGEKALKNLDKICLQILSLFEVPFQT 354

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705
              E   T SIG + + S      E++  A++AMY  K  GGNH   F V        R+
Sbjct: 355 KYGEFKTTISIGVSQFPSDSEDVRELISFADVAMYKIKKSGGNHYSFFDVKEKALIQQRL 414

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ ++  A+E  +  + Y P +     E+ G+E LI+W+HP+ G I    F+ IAE   
Sbjct: 415 ELESEITQAIEKDQFAVWYQPQVNTQTHEVYGVECLIRWNHPEQGLIPPDLFIPIAEANG 474

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            IK +  F+L+   + +  WR +     + + IN++ +    N+L   ++  +   +   
Sbjct: 475 SIKELGYFVLKTACQQLRQWRIKNIFTGV-MAINVSLRQFERNDLLAQVKKTLVDEMLPA 533

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I+L  +ES+   +      +L  LR++G+ + +DDFGT  S L  L  +P D VK + 
Sbjct: 534 ESIELEVTESLFSEDNNYHTPILCALRELGVKVAIDDFGTGYSSLQRLKSLPIDNVKIDK 593

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +       + +AI+ + I ++K  +  +IA+ I  +    +L+ +GC   Q    + P
Sbjct: 594 CFVDNIEHCPEDVAIVMATILLSKTFKVDVIAEGIETQEQADKLSDLGCFNQQGYLYSRP 653

Query: 944 LGFNSILKLLKE 955
           L  +     L +
Sbjct: 654 LKAHDFEVWLAD 665


>gi|85373314|ref|YP_457376.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
 gi|84786397|gb|ABC62579.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
          Length = 783

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 160/719 (22%), Positives = 308/719 (42%), Gaps = 31/719 (4%)

Query: 251 LIWRACSEIALSSSLIIFLFM-YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309
            +      I L+ +L IF    +L        +        A  + L  +++    V   
Sbjct: 70  WLTVLGWAIGLALTLSIFTSQDWLLRKADGRTLSQREAFRHASGSALVAIAWAAQPVLHW 129

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
           +     + +       ++   +             I+         + +         Q 
Sbjct: 130 LYGTPTSMLQ--AWLIVMVVTLGSSLALAAAPLGAIIYIATTSMTAIVVFGLAG----QY 183

Query: 370 ALVGGLVLIVILIGFTVIQHV---LATGYFSQGIFSDGERQSLAV----LGSGDIVWDWD 422
                 +L +++I + V Q     L       G+    E  SL +        D +W  D
Sbjct: 184 PPAVAALLYMLVILWGVYQRAEAFLRQSAAEAGMNERNEVVSLLLREFEENEADWLWQID 243

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGY--RRGR 478
             R   + +P  A  LGL  G   G    +L  I  +      F T L        R+  
Sbjct: 244 TQRKVRSVSPRFAFALGLEPGEADGMP--FLQLIAGDAWKTGQFPTSLHDLAERLKRKES 301

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                   + D    W  +   PM +  G  + Y G+ +D+TEQ++S E I   A  D L
Sbjct: 302 FSNLLVKVSIDGVTRWWELSGTPMLDEEGKYVGYRGVGSDVTEQRESSEKIAYLARYDTL 361

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR    + L   +  +      R   M+ID+D++K +ND LG   GD++L  ++ R
Sbjct: 362 TELPNRLMVNESLGEAMKYAKQ-WRSRCAFMMIDLDRFKAVNDSLGHQTGDELLAEVSGR 420

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  +L   ++  RL G+ F I++    +   +   A  + + ++ P  +    + V AS+
Sbjct: 421 LKSILSENEMCGRLGGDEFAIVIRDVKDRDYVDTVARRVIEHLSQPYEVNHHMLYVGASV 480

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVE 716
           G A       +  E+++NA+LA+Y AK  GG     +  S      +R  ++  L +A++
Sbjct: 481 GSAIAPRDGRSVEELMRNADLALYRAKDLGGGEHFQYEPSLHKSAEERRQLEFSLRMALD 540

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E  L Y P++   DE I+  EAL++W+  + G +S ++F+ +AE+  +I  I  ++LE
Sbjct: 541 RQEFELAYQPVVDANDETIISFEALLRWNSAEHGFVSPAKFIPLAEDTRLIVPIGSWVLE 600

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +   +  +W D     P+ + +N++ + L++ +    +   +S +    +R++L  +ES+
Sbjct: 601 QACIEAANWPD-----PVKVNVNVSPEQLVEPDFVATVVRALSTSGLPANRLELEVTESI 655

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TE 893
            + +   +   L  +  +G  + LDDFGT  S L YL  + F T+K +   + G+   ++
Sbjct: 656 FVRDALVAGKALKEVMHLGCQVALDDFGTGYSSLGYLRQLSFSTIKVDRMFVQGAAQGSK 715

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +AI+R+++ MA +++ T  A+ +    + + +  +GC  IQ  +   P+      KL
Sbjct: 716 ESLAIIRAVVAMADSLDMTTTAEGVESFEEAELIRELGCTKIQGYYFGRPMVKAEARKL 774


>gi|330975734|gb|EGH75800.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 624

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 138/585 (23%), Positives = 266/585 (45%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 41  MLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 100

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 101 CQLLGYTAEELSHKTPAELG---ETSMEKLEVVYDRIIAGKGPSEPLETQIRDKSG--RD 155

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LT +PNR  F   L   
Sbjct: 156 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTSLPNRDLFFTSLQMG 215

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + I++D +K IN+  G  +GD+VL+ ++RR+   L   D L R+ G
Sbjct: 216 MTQAAIS-RWKLAALTINLDDFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 274

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +      +    +R ++ +P ++  + + +TASIG A +      S E++
Sbjct: 275 DQFAMILMLRDGQAGTRETLERIRNALRVPFHIEGQSLVMTASIGIALYPEDGEDSRELI 334

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  A+  G ++   +          R+ ++  L  AV N    +VY P + L +
Sbjct: 335 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 394

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 395 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 453

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + + ++ L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 454 SFQVAVNISGQQISNSSLVADIRQALEKHNVAPHWLEVELTESSLMENTAHTIATLGALR 513

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
              +S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 514 ASRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 573

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL  + +   L+ 
Sbjct: 574 LLVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLDELETFLRS 618


>gi|149173557|ref|ZP_01852187.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Planctomyces maris DSM 8797]
 gi|148847739|gb|EDL62072.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Planctomyces maris DSM 8797]
          Length = 572

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 150/554 (27%), Positives = 261/554 (47%), Gaps = 13/554 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +    AV  +G +  + D     +    +   I G     + G     L     +  + 
Sbjct: 11  LQAFRDAVDEAGIVAIN-DTKGRILDVNDNFCQISGYTREELIGSDHRILRS-DQHSNEF 68

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           FR +  +    +    + E   +A + + +W+   I PM N  G I  Y+ +  DI+EQK
Sbjct: 69  FREMYRTIRRGKT--WRGEICNKAKNGRLYWVNTTIVPMFNDQGKIDGYLALRIDISEQK 126

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + ++ +   A  D LTG+PNR S L+ +  ++D           ++ +D D++K IND L
Sbjct: 127 RLMQRLQHLAHHDPLTGLPNRVSILESIQKVID---RKSGKHFALLFMDFDRFKLINDSL 183

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDIL--ARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G  VGD +L ++  R+ + ++  D +  ARL G+ F ++L + ++          + +++
Sbjct: 184 GHDVGDKLLEAIADRLRKTVRASDTIQAARLGGDEFVVLLENLHSPDDAILVGNRLLETL 243

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSS 699
           + P  L    I  +ASIG  +      T+SEML +A+LAMY AK   +    V    +  
Sbjct: 244 SRPYILGGYTIYSSASIGIVTSEHRSETASEMLSDADLAMYEAKAAKQDRPIVFDRVLRD 303

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ I+  L   +   EL L Y PII L   E+ G+EALI+W HP+ G I   EF+ 
Sbjct: 304 KAQKRLYIENQLRDVISRDELKLFYQPIIDLESGELRGVEALIRWFHPECGMIPPDEFIS 363

Query: 760 IAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALI 818
           +AEE+ MI  +  F+++   R + +WR       P  + +N++ K L    L   +   +
Sbjct: 364 VAEEMDMIIPVGNFVVDEACRQLAAWRKTLGPQAPENLHVNVSRKQLEHPTLVSIVAEAL 423

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       + L  +ES++M + E S   L  L+K+G+ L +DDFGT  S LS L   P 
Sbjct: 424 EKHEIPAKCLHLEVTESIIMHDREASIETLNDLKKLGVKLDVDDFGTGYSSLSCLCDFPI 483

Query: 879 DTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +   +  S   R   ++ ++I +A+ +   +I + I     ++ L  +GC   Q 
Sbjct: 484 DVLKLDREFIKRSDRDREVLLIHALIILAEKLGLEVIGEGIENIEQLQLLQGLGCRLGQG 543

Query: 938 SHVASPLGFNSILK 951
              + P+  + I +
Sbjct: 544 YFYSKPICGDEIEE 557


>gi|104784397|ref|YP_610895.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95113384|emb|CAK18112.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 977

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 132/564 (23%), Positives = 259/564 (45%), Gaps = 13/564 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E+Q LA      + + +         +        + G     +       LP 
Sbjct: 413 ARKEQEEQQRLAATVFEAASEGIAILGADYQLLAVNQAFCDVTGYGRAELIARNALELPC 472

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               D       +D  +    G  Q E      + + +   +++  + ++ G I+  +G 
Sbjct: 473 --SRDARRHSQAIDQALEQHGG-WQGELVEARKNGELYPQWLQLNSVRDARGRIVNIVGF 529

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D++ +++S E +   A  D+LTG+ NR  F  RL         +      ++ +D+D+
Sbjct: 530 FTDLSARRESEERLRYLAHYDDLTGLANRALFRLRLHDAAQRLRLNGR-SLALLHVDLDR 588

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N+ LG  + D++L  + +RI   +   D +ARLSG+ F I+     N   +     
Sbjct: 589 FKLLNESLGHELADELLKKMAQRIANAVPEADTVARLSGDEFAILFDGYTNLSSLVRVTT 648

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   + +P  L   E+ V+AS+G +    +    + ++  A++A  HAKH GG++ + +
Sbjct: 649 RLLDKLRVPQRLGGHELVVSASVGISVLADASFDINALVSQADMAKQHAKHLGGDNFQFY 708

Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S   S   R+ ++  L  A++  +L + Y P + L   ++   EAL++W HP+WG + 
Sbjct: 709 TESLRASTLERLQLENQLRKAIDEGQLLVYYQPKLCLRTGQLHAAEALVRWQHPQWGMVP 768

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AEE  +I  +  F+L +       W  Q     + + +N++   L   +L   
Sbjct: 769 PGEFIGLAEETGLIAPMGEFVLRQACWQACEWLRQGLE--VRVSVNLSVYQLRQGKLVSL 826

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ ++  +P  ++L  +ES ++ + E       +L  +G+ L +DDFGT  S LSYL
Sbjct: 827 VRQVLQESGLAPHLLELELTESQLLDSVEHIIATFEQLHALGVKLAIDDFGTGYSSLSYL 886

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D VK + + + G     +  AI R+II MAK+++  ++A+ +     +  L   G
Sbjct: 887 KRFPVDYVKIDQAFIRGLLEGSQDAAITRAIIAMAKSLQLKVVAEGVETLEQLAFLREHG 946

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           CD +Q   ++ P+  ++   LL+ 
Sbjct: 947 CDEVQGYLISRPVDADAFQALLER 970



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 132/383 (34%), Gaps = 37/383 (9%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMV-NRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243
             +  LY+G ++    +L   L   +++ + +  L+    M W++           +   
Sbjct: 48  ERTRLLYQGSLLPTLFMLITGLLSAWLLWSPARYLLVGVWMTWLLALVALRVIQVAAFDA 107

Query: 244 -NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
                  +  WR       + S +      +          ++  + +  +     +S  
Sbjct: 108 APPGRQAMPTWRRMFLCGSAFSGLTLASAAIAL---VPVDNFVQQAWVFGLLGTAALSAS 164

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV----LLIPAWILIFIWFI--GLWM 356
                +  A ++ A   L      ++    G++R      L++   +++  W +   +  
Sbjct: 165 VAYAVSLPAFLSFALPCLLPPIVFLFVYDTGHQRGWGWLGLILLGALMVVAWQVNRLIER 224

Query: 357 AITKRLDNDIIQPALVG------------------------GLVLIVILIGFTVIQHVLA 392
            + +R  N  +   L                           L L    +   V Q    
Sbjct: 225 GLLRRFQNQALIEHLQSAQRHGADLNHQLSAEVRQRRQAEEELRLAQAGLELRVAQRSHE 284

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +Q +    ER +LA+  S   +WDW++  D V  T  + T+ GL S  +     + 
Sbjct: 285 LDLANQALSKSEERLALALEASELGLWDWNLQTDEVHHT-QLQTLFGLDSDQVRSVRADL 343

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511
            P +H +D    R  L   +  R    + E+R+R     + W+  R R +  +S+G + R
Sbjct: 344 KPRLHPDDLPLLRRTLVEHLKGRTEDYRVEYRIRHVQGHWCWIEDRGRAVERSSDGKVTR 403

Query: 512 YIGIANDITEQKKSLEGILCNAF 534
            +G   DIT +K+  E     A 
Sbjct: 404 MLGTRRDITARKEQEEQQRLAAT 426


>gi|54296012|ref|YP_122381.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris]
 gi|53749797|emb|CAH11177.1| hypothetical protein lpp0029 [Legionella pneumophila str. Paris]
          Length = 976

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/576 (24%), Positives = 268/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++      +   +   + + A+  S  +V   D           +    G     +
Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R        ++       +   +         E   +    +  W+   I P+ N
Sbjct: 467 LGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +I  Y+ +  D+T++K   E +   A  DNLT +PNR   +++L   +  S  ++  
Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKYQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 581

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K+IND LG AVGD +L +L+ R   +++  D +ARL G+ F +IL + 
Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAVGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A   R+  + P  +  +E++V+ SIG A +      +  +++NA+ AMY +
Sbjct: 642 MQDKDAESIAKKCREICSQPFVIESQELSVSTSIGIAIYPDHGKDAKTLMRNADTAMYQS 701

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG N+   F+ +     ++ + IK +L  A   +ELY+ Y PII L   ++V  EAL+
Sbjct: 702 KIRGKNNWTVFQNTMIEGANNHIRIKTELHQAFTRNELYICYQPIIDLKKNKVVAAEALL 761

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W +   G I+  + + +AEE  MI  +  ++L+++      W        I + +NI++
Sbjct: 762 RWQNTTLGQINPDQIIPLAEETGMIIPLGYWILDKVCAQAKEWEFITG-SKIKLAVNIST 820

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +    +Q ++ +T  S   +    +ES  + + +     L +L  +GI  +LDD
Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 880

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S L Y+   PF  +K +   +    +    ++++ SII MA+N++ ++IA+ I  
Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNELSLINSIITMARNLKLSVIAEGIET 940

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ +  M CD +Q  + + PL  +  L  L  +
Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFFLMNK 976



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     + Q +    +    +    ER    +    D ++  ++    +         L 
Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVSDGIFIHNLQGAFLEVNEAACLSLN 342

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
            +   +       +           +  L+      ++G +  E   R  D     + +R
Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTTFPVDVR 396

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + N+ G+ L  + I  DIT QK+S   I   
Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 6/137 (4%)

Query: 396 FSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
            S     + +R+ L    +  +GD V   +         P    I   ++          
Sbjct: 168 LSLARLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFENITLYSAREAMNKTVAS 227

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILR 511
           L    + D   F  I  +         + + R R  D  +      I P+ +   G I +
Sbjct: 228 LLRSPVEDVQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQTIIVPVMDDELGRITQ 285

Query: 512 YIGIANDITEQKKSLEG 528
           +I I  DITEQ      
Sbjct: 286 HIAIKQDITEQVHRFNQ 302


>gi|300714960|ref|YP_003739763.1| sensory box protein [Erwinia billingiae Eb661]
 gi|299060796|emb|CAX57903.1| Putative sensory box protein [Erwinia billingiae Eb661]
          Length = 992

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 143/529 (27%), Positives = 245/529 (46%), Gaps = 14/529 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           + R+ +        +LGL    M G        +     D F  +  S    R   L   
Sbjct: 424 VSREILLMNNKAEQLLGLTQQQMSGKKLA--ACLTSEMGDYFTQL--STAAQRFEGLHKN 479

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            ++         +      +  ++      + IA+D+T+Q+ +   I   A  DNLT +P
Sbjct: 480 EQLLNTRGGERIISATASIIRGNDARTNYVLLIADDVTDQRAADARIHHMAHHDNLTSLP 539

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F  RL   L  +  +       + +D+D +K +ND LG  VGDD+L ++  R+  +
Sbjct: 540 NRVLFSQRLNEAL-RADREAGKLTATLGLDLDNFKNVNDALGHQVGDDLLRAVASRLRGV 598

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D LAR  G+ F I+L    +  +    A  + +   +P N+    ++V  SIG A 
Sbjct: 599 LRDVDTLARNGGDEFSIVLPGLTHQQEADAIAHRLIEVTKLPFNVDGHNLSVGLSIGIAI 658

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720
                 T  ++L+ A++A+Y AK  G N  E F V      + R MI+ DL  A+ +  L
Sbjct: 659 GGRELATPEQLLRCADMALYEAKRNGRNRFEHFSVQMGEAANLRRMIENDLRDAITHKHL 718

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI      EI+G EAL++W HP+ G I   +F+ IAEE  +I ++  + L    R
Sbjct: 719 RLYYQPITNNHGREIIGYEALMRWHHPEKGLIMPMDFIPIAEETGLIHSLGAYALYEACR 778

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  +W          + +N++     ++ L   ++A + ++   P R+++  +ESV++ N
Sbjct: 779 EAANWPAHQ-----SVAVNLSPLQFKNSSLVSVVEAALKESGLEPGRLEVEITESVLLDN 833

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
              +   L +L+ +G+ + LDDFGT  S LSYL   PFD +K + S +    + R   AI
Sbjct: 834 TLVNIRTLQKLKALGVRIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMKDSREALAI 893

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +R+I  M+++++  I A+ +      ++L   GC   Q      P    
Sbjct: 894 IRAITGMSRSLDIQITAEGVESNEQFEQLKSEGCTLFQGYFFGRPQPPE 942



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSD-GERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATIL 438
           LIGF  I         +Q       E+  L V G  D  ++  D   + V          
Sbjct: 110 LIGFAKITRDCTEQKAAQAGQRAHEEKFRLLVDGVKDYAIYMLDAEGNVVNWNAGATRSK 169

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMII 497
           G  +  + G   +        DR       +    +R GR + + +R R  D    +  +
Sbjct: 170 GYTADEIVGKHFSVFYST--QDRLAKVPEANLRTAHRTGRFEEQGYRYR-KDGSAFFAHV 226

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS--LEGILCNAFQ 535
            I  + + +G ++ Y  I  D TEQ++    +      F+
Sbjct: 227 VIDAVHDDDGKLIGYAKITRDCTEQQRLLVEQREREQVFR 266



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 6/138 (4%)

Query: 397 SQGIFSDGER---QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
            + +    ER     L V G  D  ++  D     V          G ++  + G   ++
Sbjct: 252 QRLLVEQREREQVFRLLVEGVTDYAIYMLDPNGLVVNWNAGARRAKGYSADEIVGK--HF 309

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             +    DR       +  +    GR   E      D    W  + I  + N +G ++ Y
Sbjct: 310 SCFYSAQDRLARLPETNLKLAETSGRFDDEGWRYRKDGSAFWAHVVIDAIHNDSGQLIGY 369

Query: 513 IGIANDITEQKKSLEGIL 530
             I  D TE ++  + IL
Sbjct: 370 AKITRDCTEVREYEQQIL 387



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 3/122 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V    D  ++                   G     + G   +        DR    
Sbjct: 9   YRLLVQSVVDYAIYMLKPDGTVANWNAGAQRAKGYLPDEIVGKNFSLF--YSEQDRAKGL 66

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    R GR + E      D    W  + I  +   +G ++ +  I  D TEQK +
Sbjct: 67  PQHGLETASRTGRYEVEGWRYRKDGSAFWAHVIIDAVRAEDGTLIGFAKITRDCTEQKAA 126

Query: 526 LE 527
             
Sbjct: 127 QA 128


>gi|120611490|ref|YP_971168.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Acidovorax citrulli AAC00-1]
 gi|120589954|gb|ABM33394.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax citrulli AAC00-1]
          Length = 1260

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/593 (23%), Positives = 257/593 (43%), Gaps = 19/593 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            + V  H +     ++ +  + E   SL +  +   +WDWDI    VT       + G+  
Sbjct: 664  WLVSAHDITERKRNEDLVREREALLSLTLSAASLGLWDWDISTGMVTGDARWRELQGMPD 723

Query: 443  GSMHGPIR--NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV------RAADNQFHW 494
             +        +W   +   D +N    L+  +          ++V              W
Sbjct: 724  AAGQPVAEGVHWTSGMAPADIENVTDALERHIARPDTHFDATWQVAPSQAAAPGAPAGRW 783

Query: 495  MIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            +    + +  +  G   R +G+  D+T Q+   + +   A  D LTG+PNR     RL  
Sbjct: 784  VRNLGKIVGHDERGRPGRMLGVCIDVTSQRVQEDMLQQLAHFDALTGLPNRVQLARRLEQ 843

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             +  +      +  V  +D+D +K +ND LG + GD +LV +  R+   L+  D +ARL 
Sbjct: 844  AMAHA-RAGGWQLGVAYLDLDGFKPVNDRLGHSAGDRLLVIVAGRLTRALRAVDCVARLG 902

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+ F +++    +          + +++A P  L    +TVTAS+G+  +      +  +
Sbjct: 903  GDEFVLLMPELQSHADAEQLLHRLMENLAAPYTLGTERVTVTASVGYTLYPEDASDADTL 962

Query: 674  LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            L++A+ AMY AK  G N V+ F       R       E L  A+   +  L   P + + 
Sbjct: 963  LRHADHAMYGAKQGGRNRVQPFDAVQERARQTLREQAERLREALARGQFMLYLQPKVDMR 1022

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
               +VG EAL +W HP  G ++   F+ + E   +  A   + +E     I   R     
Sbjct: 1023 SGTVVGAEALARWIHPDKGIVTPGAFLHLIEAAELETAFGEWAVESALDLIEQLRASGLE 1082

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + +NI+++ L        +   +++        + L  +ES  + + +     L +
Sbjct: 1083 --LPVSVNISARHLQQEGFAPWLAGRMARRPGIPHRLLDLEITESAALYDMDHVAPQLQQ 1140

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
            LR++GI+++LDDFGT  S LSYL  +P DT+K + S + G        AI++ +I +A++
Sbjct: 1141 LRELGITISLDDFGTGYSSLSYLRRLPMDTLKLDRSFVHGMMSDRGDYAIVQGVIGLARS 1200

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960
               +I+A+ +  E     L R+GC   Q   ++ P+   +  + + + R P  
Sbjct: 1201 FGYSIVAEGVETEAQGLTLMRLGCTLAQGYCISRPMAPEAFPEWVAQWRAPET 1253



 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           +  + F   A +      +    M+           +       + +   +    + +  
Sbjct: 65  IAALCFGLQAGVVSALVAAVGSAMLLPEATFQAAGLLASGCLLGLAWRWGQDRLSSRM-- 122

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            AW+ +    + L +A                 L+     +     Q V A G     + 
Sbjct: 123 -AWLALPGLGLTLSLAARAWNGQPPWAVLGGILLLGGGAKLVLGRAQAVNALGRHQTDLN 181

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +        +  SG   W+W +   R+     +  +LG+ +G    P++ W+   H +D 
Sbjct: 182 A-------MLDASGGGRWEWFVQEQRLVCHGPVYGMLGIDTGGEGCPVQRWIALRHPDDT 234

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDIT 520
           +     L   V         E+R+R    ++ W+I R +    +++G +LR  GI  D T
Sbjct: 235 ERLAAHLQRMVDGLEATFSAEYRMRDTGGRWRWIISRGQVRERDAHGKVLRMGGIHLDAT 294

Query: 521 EQKKSLEGIL 530
             ++  + + 
Sbjct: 295 ALRQVQDAVR 304



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 8/149 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +V Q + A       + +  +  + A   +G  VW     +  V  +     I GL  G
Sbjct: 412 VSVFQDLSAAQRAHDQLAAAHDMLAQAGRMAGLGVWKHRHGQGLVYWSDVCFDIHGLPRG 471

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR---LQYEFRVRAA-DNQFHWMIIRI 499
            +      +L          FR  L       R R      E ++  A D +  W+ I  
Sbjct: 472 GLPPEPAEYLRDFVA---APFRASLADLFRRGRQRSVGWSCEMQILRADDGRAVWVRIHA 528

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEG 528
            P+    G +    G+  DI E +++ E 
Sbjct: 529 EPLL-EGGAVTGLRGVMQDIDEWRRAAER 556



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 7/144 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASG 443
            V+Q +      ++ +    +R           V          +        + G+  G
Sbjct: 542 GVMQDIDEWRRAAERLSQSEDRFMRIFELMPYPVLMSRRSDGAYLMVNEAWERLTGIPRG 601

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G     L       R      +      R      E  +   +     ++  +   +
Sbjct: 602 QALGRTAVELGLFSAEGRRQLLDAM----SGRTVHNALEITIHTRNGGDRTLLQSMHA-A 656

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
             +G  +  +  A+DITE+K++ +
Sbjct: 657 ELDGTPVWLV-SAHDITERKRNED 679


>gi|312963947|ref|ZP_07778418.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311281982|gb|EFQ60592.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 974

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/562 (24%), Positives = 270/562 (48%), Gaps = 10/562 (1%)

Query: 399 GIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +  + +R +  V   + + +   D     +      + + G     M G     LP   
Sbjct: 413 KVLEEQQRLASTVFEAASEGIVILDPDYVLLAVNQAFSRVTGFEIDDMLGRNVVELPS-S 471

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            + R +F  I  + + +  G  Q E      + + +   +++  + +  G +   +G   
Sbjct: 472 RDARRHFPVIRQALLSH--GTWQGELVETRKNGELYPQWLQLNAVRDLRGKVSHIVGFFA 529

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D++ +++S E +      D LTG+ NR  F +RL                ++ I++D++K
Sbjct: 530 DLSARRESEERMRYLTHYDELTGLANRSLFRERLREA-HQRVRQGGRSLALLHINLDRFK 588

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG  V D +L  + RR+   L   D +ARLSG+ F ++  +  N   +A  A  +
Sbjct: 589 LLNDSLGHEVADQLLQKMARRLINALPEADTIARLSGDEFAVLFDAYGNLSSLARVATRL 648

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              + +P+ +   E+ V+AS+G +    +    S ++  + +AM HAKH GGN+ + +  
Sbjct: 649 LAKLRVPVAVEGHELVVSASMGVSLLPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTD 708

Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S   S   R+ ++  L  A++  +L + Y P + L   ++  +EALI+W+HP+WG +  +
Sbjct: 709 SLQASTLERLQLENHLRKAIDERQLTVFYQPKLCLATGKLNAVEALIRWEHPQWGMVPPA 768

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I  +  F+L         W+ Q    PI + +N++   L   +L   ++
Sbjct: 769 DFIGLAEETGLIVPLGEFVLREACWQACEWQRQGLA-PIRVSVNLSVHQLRQGKLVSLVR 827

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T   P  ++L  +ES ++ + E       +LR +G+ L +DDFGT  S LSYL  
Sbjct: 828 QVLEETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKR 887

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           IP D VK + + + G  +  +  AI R+II MA  +   ++A+ +  +  +  L    CD
Sbjct: 888 IPVDYVKIDQAFIRGLGQGREDAAITRAIIAMAHGLSLKVVAEGVEDQQQLDFLRVERCD 947

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q   ++ P+  + +  LL++
Sbjct: 948 EVQGYLISRPMQADGLADLLRK 969



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 36/288 (12%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
               ++  + +  +     +S       +  A ++ A   L     I+Y    G  +   
Sbjct: 140 PVNSFMQQAWVFGLIGAATLSASVAYAVSLPAFLSFAVPCLV--PSIVYLLWDGNPQQQG 197

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL---------------------- 377
                +++ +    +   I + +  ++++      L+                       
Sbjct: 198 WGVLGLILLVSLNLVAWQINRLIQRELLRRFQNQALIEHLQEAQQRSEQLNQDLMREVEQ 257

Query: 378 ----------IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                       + +   V Q        S  +     R  +A+  S   +WDW++  D 
Sbjct: 258 RRQVEEELREAQLGLQDRVAQRSQELDAASLALNKSEARLVMALQASELGLWDWNLQTDE 317

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           V  T  +  + GL    +   + +  P +H +D    +  L   +  R    Q E+RVR 
Sbjct: 318 VHHT-QLKELFGLEPEYVTAMLGHLKPRLHPDDLPLLKRALVEHLKGRTEDYQVEYRVRH 376

Query: 488 ADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               + W+  R R +    NG ++R +G   DI+  K   E     + 
Sbjct: 377 GAGHWVWIEDRGRAVERAPNGRVIRMLGTRRDISAGKVLEEQQRLAST 424


>gi|222110861|ref|YP_002553125.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
 gi|221730305|gb|ACM33125.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax ebreus TPSY]
          Length = 1047

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 130/590 (22%), Positives = 254/590 (43%), Gaps = 27/590 (4%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               V+Q +    +  Q +    E     +      V         V        I G   
Sbjct: 466  HLAVVQDISKRKHMEQVLRQSEEHLRNILNHMPVGVNQVQ-DGKIVFRNDRHVQICGYDI 524

Query: 443  GSMHGPIRNWLPYIHINDRDN------FRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWM 495
                  +  W   +  + R        +     + +    G ++  E  + A       +
Sbjct: 525  RE-APDVDTWWRLVMPDARQREHAREAWHAACTAALKNPDGAIRTVECVITAKSGVRRAV 583

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             +    + +S+      I    D +++K + E +   A+ D LTG+PNR+  LDRL   L
Sbjct: 584  ELSGMILGDSH------IVTMVDQSQRKAAEEEVRYLAYNDPLTGLPNRRLLLDRLEQAL 637

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +SA    L   VM++D+D +K IN+  G  +GD +L  + RR+ + +   + LAR  G+
Sbjct: 638  AMSARHQ-LCGAVMMLDLDNFKTINETQGPDMGDRLLREVARRLRDCVPEDETLARHGGD 696

Query: 616  RFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
             F ++L          + +  +    +  +I  P ++  ++     S+G A +   + ++
Sbjct: 697  EFVVVLKDLGADPQEAANRAEEMGQTILAAIRAPFDIDGQQHHTALSVGIAIFRGVRESA 756

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728
             E+LK ++LAMY AK  G + +  F        S+R  ++ DL   ++  +L L Y P +
Sbjct: 757  DELLKRSDLAMYEAKAAGRDTLRFFDPQMQAAVSERAALEADLRAGLDAGQLELFYQPKV 816

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                  I G EAL++W HP  G IS +EF+ +AEE  +I  +  +++      +  W   
Sbjct: 817  DQ--GRITGAEALVRWRHPDRGFISPAEFIPLAEESGLILRVGEWVMRSACAQLAQWSAH 874

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              +  + + +N++ +   +      +   ++ +     R++L  +E +++ + E +   +
Sbjct: 875  PVLGELTVAVNVSPRQFHEGSFVPQVLEALAASGADARRLRLELTEGMLLQDVEDTIAKM 934

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
             +LR  G+  +LDDFGT  S L+YL  +P   +K + S +    +      I R+I+ + 
Sbjct: 935  VQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDKSFVRDVLTDPNDAVIARTIVALG 994

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++   ++A+ +  E     L R GC   Q   ++ PL   +   L+ +R
Sbjct: 995  TSLGLRVVAEGVETEAQRAFLERNGCHAWQGYLLSPPLQAAAFEALVLKR 1044



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 4/155 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGL 440
           +     Q +         +     R       +   +   D    R V        +LG 
Sbjct: 338 LVLRRSQALDHAKETDTALRESEARLRAVFNQAAVGIAQTDSRTGRLVRMNQKFCDLLGY 397

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           ++  +             +D       L   +       + E R R  D    W+ + + 
Sbjct: 398 SAQELQQMRFQDFS--EPSDLAADLEQLQRMLAGELSEYRMEKRYRRKDGSEVWVDLMVS 455

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           P+    G    ++ +  DI+++K   + +  +   
Sbjct: 456 PLRLE-GQPEHHLAVVQDISKRKHMEQVLRQSEEH 489


>gi|26988982|ref|NP_744407.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24983800|gb|AAN67871.1|AE016418_11 sensory box protein [Pseudomonas putida KT2440]
          Length = 562

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/563 (24%), Positives = 263/563 (46%), Gaps = 17/563 (3%)

Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
              AV  +   ++ + D+  +         +I G +   + G     L   +H  +   F
Sbjct: 5   YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPTFF 60

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523
             +  + V  R    + E   R+ D   +W+   + P+ +   G + +Y+ I  D+TE++
Sbjct: 61  VGMWRALVAGR--VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKR 118

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +      D LTG+PNR    D L   L  S   + +   V ++D+D +K +ND  
Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYS-RCEGISLAVCMLDLDGFKAVNDGY 177

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +LV + +R+  +L+  D +ARLSG+ F +IL   ++  ++      + +++A 
Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAA 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E  ++++ASIG   +      +  ++++A+ AMY AK RG N    F        
Sbjct: 238 PCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                    +  A+ N EL L Y P + L   +++G E L++W  P  G +   +F+   
Sbjct: 298 KATHQTVARVRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWV 357

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ +    + +W+ Q    P  + +NIA++ L  ++  E +Q L++  
Sbjct: 358 EQTDLIVEIGEWVIGQALSQLQAWQRQG--QPWSLSVNIAARHLQRSDFAERLQQLLAAY 415

Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+ + L   ESV + N +     L   R +G+  +LDDFGT  S LSYL  +P  T
Sbjct: 416 PAVDPALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      +  +A+  ++I +A+     +IA+ +      + L  +GC+  Q  
Sbjct: 476 IKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535

Query: 939 HVASPLGFNSILKLLKERFPLVK 961
            +A P+  + +    +     V+
Sbjct: 536 CIARPMPASDVQAWAQAYQQPVQ 558


>gi|311899817|dbj|BAJ32225.1| putative signaling protein [Kitasatospora setae KM-6054]
          Length = 726

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 133/589 (22%), Positives = 250/589 (42%), Gaps = 13/589 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +    A     + +     R       +   +   D   + +     +  I G   
Sbjct: 134 EAIRLAADTARQEVEKALRVSEARFRALFESAAIGIGLGDTDGNILAVNRALGDIFGGGP 193

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G   +    +H  D        +  +  +R   Q++      D +  W  + +  +
Sbjct: 194 EDMTGVRVD--DLVHPEDTPGVWEAYEELISGKREYFQFDKPYYRRDGEVVWTHLTVSLI 251

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + +G  L  + +  D+TE+ +  E +   A  D LTG+PNR +F +RL  I +    + 
Sbjct: 252 RDDDGAPLYQVAMLEDVTERYRLQERLRHQATHDPLTGLPNRAAFFERLEKIFEEP--EP 309

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIIL 621
           + R  +  +D+D +K +ND LG  +GD +L  + RR+   L     ++ARL G+ F ++L
Sbjct: 310 DTRFGLCYVDLDGFKVVNDSLGHDMGDQLLTIVARRLENALSPLGHMVARLGGDEFVVLL 369

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +     +    A  +  ++  P+ + +  + V AS+G      +  T    ++ A+L +
Sbjct: 370 ENCRGEQEAVAAAKTVLAALTKPVVIGDHRLAVGASVGVLERRIASTTPGAAVRAADLTL 429

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G      F               + +  A++  E ++ Y P++ L    + G+E
Sbjct: 430 YRAKEAGRGRWTLFDPKENARAVSRYAVSVRMPAALDRGEFFIDYQPMVDLSSGTMTGVE 489

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +   EF+ +AEE  +I  +  ++LE+       W  +       + +N
Sbjct: 490 ALVRWRHPQLGVLGPEEFVGVAEETGLIMPLGRWVLEQACEQAADWVARFGERAPRLSVN 549

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +A +      L   ++  +  T   PS ++L  +ES V+G  + S   L  L  +G+SL 
Sbjct: 550 LAVRQARSAGLVGDVERTLRSTGLDPSMLQLEITESTVVGPEDESLKALHALVDLGVSLA 609

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETTI 913
           +DDFGT  S L+YL  +P   +K  GS +    +          I+  ++ +A  +  T+
Sbjct: 610 VDDFGTGWSNLAYLRDLPVSNLKIAGSFVGDLHDPAKDTHLGWRIVSGLVSLAHTLGLTV 669

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            A+ +    D + L  MGCD  Q  H   P+    I + + E  P   +
Sbjct: 670 TAEGVESRADAERLRLMGCDLAQGWHFGRPVRPAEIARRIVETDPEAAS 718


>gi|228906375|ref|ZP_04070259.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228853287|gb|EEM98060.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 569

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 252/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFILEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I+ SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 IAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|113478306|ref|YP_724367.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Trichodesmium
           erythraeum IMS101]
 gi|110169354|gb|ABG53894.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Trichodesmium erythraeum IMS101]
          Length = 771

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 154/592 (26%), Positives = 276/592 (46%), Gaps = 25/592 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            + ++       +    +  R    +  + D+ W  D        +P +   LG     +
Sbjct: 178 DMHNITEGKQARKAKLENERRLRALIENTTDLTWIIDAHGTSSYVSPSVMKTLGYVPEEV 237

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                +    IHIND       ++  +      +   ++RV+ +   + +    +    +
Sbjct: 238 VSQ--SIFDLIHINDLLLVTCTINKAIKNPNISQTAIKYRVKNSSGSWCFFEGILTNFLD 295

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G +   I  ++DIT++K + E    N F D LT +PN   F+DRL   +  +     L
Sbjct: 296 DPG-VRGIIINSHDITQRKLTEERWKYNVFHDALTHLPNHDLFIDRLEEKIKETKCRKKL 354

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+++DID++K +N+  G  + + ++V + +++  LL   + +ARLS + FGI+L + 
Sbjct: 355 LFAVLLVDIDRFKVLNNRFGHQITNKLIVMIAKKLKTLLNHGNTVARLSPDEFGILLENI 414

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++       A  + K + +PI L   EI +  SIG A  + +  ++  +L++AE+AMYHA
Sbjct: 415 SDISDATYIADQINKQLTLPIILDGNEIFINPSIGIAVGSRNISSAEHILQDAEIAMYHA 474

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLA---------VENSELYLVYHPIIRLMDE 733
           K+      + F  S       RV ++ DL  A          + SE  L Y PI+ L   
Sbjct: 475 KNLSRGSHQVFCNSMRSQFLQRVQLENDLQSALNNIQSQSLRKQSEFILYYQPIVSLATN 534

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP- 792
           EI G EAL++W HPK G IS  EF+ +AEE  +I  + L++L      +  W++Q     
Sbjct: 535 EITGFEALVRWQHPKLGFISPDEFIPLAEETGLIIPLGLWILREACFQLRKWQNQLPNNY 594

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N+++K     +L + +  ++ +T      +KL  +ES ++ N E  R  + RLR
Sbjct: 595 HLNINVNLSAKQFAQVDLIDQIDKILLETQLDGKSLKLEITESTLIENNESIRGKMSRLR 654

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSII 903
              I L +DDFGT  S  +YL   P +T+K + S +            + K I ILRSII
Sbjct: 655 ARNIDLYIDDFGTGYSSFNYLYNFPMNTLKIDRSFINRIGLTNLVNNKSIKTIEILRSII 714

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++ N+   ++A+ +       +L  + C+Y Q    + PL   +   L+ +
Sbjct: 715 TLSHNLGINVVAEGVETPEQALQLQALKCEYAQGYLFSKPLDMTAATGLVAQ 766


>gi|217969731|ref|YP_002354965.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507058|gb|ACK54069.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 712

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/593 (23%), Positives = 275/593 (46%), Gaps = 14/593 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIA 435
            +  G    +   A  +   G+ +      +    V G  + +   ++  D +   P   
Sbjct: 117 ALARGLAEARGRRARRHAEDGLRAREAHLRIWGEVVEGLHEGIVVTNLAGDILDCNPAFE 176

Query: 436 TILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            I G A   + G   R      H  D   +  + D+ V   RG    E   R    + + 
Sbjct: 177 RITGHARAEVLGLNPRVLKSGRH--DAAFYAGMWDALVT--RGSWVGEVWNRRKSGEIYP 232

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             + +R +  ++G    Y+G+ +DI+ +K+    +      D LTG  NRQ F++RL   
Sbjct: 233 ERLALRAVRGADGLPTHYVGMFSDISREKQDQARLDYLTHHDPLTGFANRQLFMERLQQA 292

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++ +A  +  +  V+++D+D+++++N+ LG   GD +L  +  RI   LK    LARL  
Sbjct: 293 VERAAAGEG-KAAVLLLDLDRFRRVNESLGQDAGDRLLQVMAERIAGCLKRRSSLARLGS 351

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++    ++  +A  A  +   IA P+ +  + + ++AS+G +        +  +L
Sbjct: 352 DEFLVLITEFTDADALAALARRILDEIARPVTVNGQLLHMSASLGISVHPQDGADAEHLL 411

Query: 675 KNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + AE A    +H      H  +  + +     + ++ +L  A+   EL L Y PI+ + D
Sbjct: 412 QAAEAARAQIRHGLGNRLHFFTAGMDTRARRWIEVESELRHALARGELQLYYQPIVCVRD 471

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +  +EAL++W+ P  G +S +EF+ +AEE  +I AI  + LE   R +  W+D   +P
Sbjct: 472 GRVRTVEALLRWNSPALGWVSPAEFIPVAEESELIVAIGDWALETACRQVRHWQD-TGLP 530

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N+++  L    L E ++ ++ +T   P +++L  +ES +M + E     +  + 
Sbjct: 531 AVRVAVNVSAHQLAGGRLPERVREVLERTGIDPGQLELELTESAMMSDSEHGARQVEAIS 590

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G+S+ LDDFGT  S L+YL       +K + S + G     K   I+ + + +A+ + 
Sbjct: 591 RMGVSVALDDFGTGYSSLAYLSRFALTKLKIDRSFVDGLSRDPKSSIIVDATLGLARGLG 650

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             ++A+ +  E     L   GCD +Q    + P+   ++  L+    P  +  
Sbjct: 651 LRVVAEGVETEEQRALLAAAGCDALQGYLFSPPVAPAALGALIDRFAPAERYA 703


>gi|157960251|ref|YP_001500285.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella pealeana ATCC 700345]
 gi|157845251|gb|ABV85750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella pealeana ATCC 700345]
          Length = 1492

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 145/577 (25%), Positives = 272/577 (47%), Gaps = 15/577 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                I  + +     + +  D    + A   + + V  +D       +      I+GL S
Sbjct: 911  SIERIAGIYSDITEQRKLKDDVYLLAQAFENTSEAVLIFDSDETIQVSNKAAQNIIGLDS 970

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-MIIRIRP 501
             S+ G   ++   +   ++      + + +         E     A       + + +  
Sbjct: 971  ESLIG--LSFSQVLQGEEKS---ASIANLLQQ-GLSWAGEC-FVDAGGCQRCAVWLNVSS 1023

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + NS+G+  RY+ + +DITE+K++   +   A  D LTG+PNR  F  +L   +  +  +
Sbjct: 1024 ILNSSGNASRYVVVFSDITERKRTEAELRRLANFDILTGLPNRSLFSSKLAQSVYQAEKE 1083

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                  ++ +D+D++K +ND  G ++GD +LV  + R+  L+   ++L R  G+ F I+L
Sbjct: 1084 GG-NLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSLVADENVLCRFGGDEFVILL 1142

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                    +      +  SI  P  L  RE  ++ SIG + W         ++KNA+LAM
Sbjct: 1143 RDTPTIDTVNYLCEQLLASIEKPFVLYGREFFISTSIGVSLWPEDAKQPEVLIKNADLAM 1202

Query: 682  YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGL 738
            YHAK  G  H + +           + ++ DL  A+E +EL L + P I +  ++++VG+
Sbjct: 1203 YHAKEEGKGHFKYYSEERNAEALYHLALEADLRKAIERNELELHFQPQIDILQNDKLVGV 1262

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W+HPK G I +  F+ +AE   +I  I+ +++    R    W  Q    PI + +
Sbjct: 1263 EALLRWNHPKEGFIRTDIFIKVAEACGLIVEIDRWVMGEACRRGAIW-SQKLAEPIKVSV 1321

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            NI++      +   G+Q ++++T    S + L  +E V+M   E ++  L  L+++GI +
Sbjct: 1322 NISALHFRLPDFISGVQQIMAETEMPHSALSLEITEGVLMKELEVAKQHLKALKELGIDV 1381

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             +DDFGT  S L+YL +   +T+K + S +          AI  SII +A+N++  ++A+
Sbjct: 1382 AIDDFGTGYSSLAYLRHFEVNTLKIDRSFLIDIATNKADQAIASSIIELARNLKLDVVAE 1441

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +     ++ +   GC  IQ  + A P+    I   +
Sbjct: 1442 GVETHEQLEHVFSRGCYVIQGYYFAKPMPLAEIETYM 1478



 Score = 96.2 bits (238), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 13/158 (8%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I F   + V+A    +  +     R   A+ GS   +W+W    D       +    G+ 
Sbjct: 786 IIFYRQRQVMAFKGVNSALIDSENRLKQALKGSNSELWEWQRESDLF----RLENTGGVL 841

Query: 442 SGSMHGPIRNWLPY----IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +    G  + +       IH  D        +  +  R  R + E+R    +    W+ +
Sbjct: 842 AA---GQSQVYFRLDQFPIHKEDVGEVMAAWEDMLQERTDRFEVEYRYWRTNGTMGWVRV 898

Query: 498 RIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNA 533
             RP+  S+  G I R  GI +DITEQ+K  + +   A
Sbjct: 899 SGRPVERSDVSGSIERIAGIYSDITEQRKLKDDVYLLA 936


>gi|307326849|ref|ZP_07606041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
 gi|306887612|gb|EFN18606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
          Length = 748

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 150/580 (25%), Positives = 264/580 (45%), Gaps = 14/580 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  + A     + + +   +      G+   V    +  + +     +A + G   
Sbjct: 167 EAISRAALAARTEAEKALHASEAKFQAVFEGAVIGVGIAGLDGEVLVVNDAMARMFG--G 224

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                P RN   ++H +D      +    V   R   + E      D    W  + +  +
Sbjct: 225 MDFFRPGRNVTEFVHPDDVPGAHELYRELVNGERDHFRIEKPHYRDDGSELWTNLTVTLL 284

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +S+G     + +A DITE ++  E +   A  D LTG+PNR  FL+RL  +L   A  +
Sbjct: 285 RDSSGAPQYQLALAEDITEHRQLRERLRYEATHDELTGLPNRTLFLERLDQVLAAGADAE 344

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621
             R  V  +D+D +K +ND LG A GD +L ++ +R+ + +K   +++AR+ G+ F  ++
Sbjct: 345 --RFGVCYLDLDGFKAVNDSLGHAAGDRMLKAVAKRLQDCVKTPAELIARVGGDEFLALV 402

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                    A  A  M  ++A P+ +  RE+ V ASIG     + +I  +E+L++A++ M
Sbjct: 403 TGPAAQADGAGLARRMLAALAEPVRVEGRELRVRASIGVVDGRAGEIGRAEVLRSADITM 462

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  GGN  E     S         +   L  A+E  E ++ Y P++RL D  + G E
Sbjct: 463 YRAKAAGGNRYEIADADSNARVIARHSLTNGLPSALEKGEFFIEYQPLVRLTDGTVRGAE 522

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFIL 797
           AL++W HP  G +   +F+ +AE+  +I  +  ++LE+ AR    WRD       P+ + 
Sbjct: 523 ALVRWLHPVHGVLGPDQFIPLAEDTGLIVPLGRWVLEQAARQAREWRDADEDDGEPLRVN 582

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   L    L     A++      PS + L  +E+ ++G  E +   L +L  +G+ 
Sbjct: 583 VNLSPCQLSHPTLVSDTVAVLENAGLCPSALCLEVTENDLIGADESALRPLRQLADLGMD 642

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETT 912
           + LDDFGT  S LSYL  +P  T+K + S   G          + I+  I+ +A  ++  
Sbjct: 643 IALDDFGTGYSNLSYLRRLPVSTLKLDRSFTRGMQRAPADPVDVKIVEGIVSLAHTLDLA 702

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  + +   +  + L  +GCD  Q  + A P     +  L
Sbjct: 703 VTVEGVETAVQAEHLRGLGCDTAQGWYYARPGPPERLHTL 742


>gi|170690318|ref|ZP_02881485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170144753|gb|EDT12914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 553

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 129/525 (24%), Positives = 242/525 (46%), Gaps = 10/525 (1%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  +  + G+ +  +      WL  +   D    R  +           ++E+R+R  
Sbjct: 24  HVSAGVERVFGITAEQLATTPSAWLELVCAVDVGPLRAEMHRIASEGVEG-RFEYRIRRP 82

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D    W+     P+ +  G ++R +G++ DIT +++ L  +   A  D LTG+ NR + +
Sbjct: 83  DGCLRWIRSTAYPVRDETGAVVRIVGVSEDITVEQERLAALDRLAHTDGLTGLANRSALV 142

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            ++ T+        +    +M ID+D++K +ND LG    D +L ++   I   L     
Sbjct: 143 RQMKTLCSC-----DAAFALMFIDLDRFKVLNDTLGHTAADRLLKNIAETIQAALPDDAC 197

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F +IL  E +  ++A  A  +  + +  +     +  VTASIG + +  +  
Sbjct: 198 VARLGGDEFAVILNGEADKGRLATLARTLLSAFSSGVPADSADPFVTASIGISVYPENGR 257

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
               +L +A++AMY AK  G N        SS       ++  L LA+ + +  L +  I
Sbjct: 258 DHESLLTSADIAMYAAKKGGRNGFRFAGKASSDVLGDFELERVLPLALASGQFVLHFQGI 317

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            +     + G+EALI+W+HP  G +  + F+ I EE   I  +  ++++     +  WR+
Sbjct: 318 HQPTSLAMTGVEALIRWNHPARGMVRPASFIPILEESGFIVEVGAWVMDAALAQLAYWRN 377

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +N++++ L DN L   +   + K    P  +++  +ES +M N   ++  
Sbjct: 378 A-GEKDLRMSVNVSARQLRDNTLVAIVDEALRKHQLPPRCLEIELTESALMENTSLAQET 436

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPM 905
           L  L+++G+ + +DDFGT  S L YL     DTVK + S     G      AI+R II M
Sbjct: 437 LIALKRLGVRIAIDDFGTGYSSLGYLADFSPDTVKIDRSFTARLGRDAAAAAIVRGIIQM 496

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +  +   + A+ +     ++ L    CD+ Q   +  P    S++
Sbjct: 497 SHELGMKVTAEGVETSKQLQTLREASCDFAQGYLLTKPASAESLM 541


>gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 747

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 135/614 (21%), Positives = 250/614 (40%), Gaps = 13/614 (2%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           IP   +  +  +   +A       D +        +L  +     + +  L        +
Sbjct: 85  IPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHLALRRTQLELLAAEASL 144

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
                R       +GD +   D     V         +LG    +M G     +P     
Sbjct: 145 RDSELRHRRMFETAGDGILVVDCETGIVADLNDQCCQMLGSTLQAMRGLRVEDIPVFQGA 204

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                   L      +          +  D     + +         G  +       D+
Sbjct: 205 GAKPIVDALHGASHMKWDEWS----WQKPDGTAVTVEVVGTTYR--AGKRMLAQCTFRDV 258

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
             +K++   +   A  D LTG+PNR   +DRL   +  +  D + +  ++++D+D +K +
Sbjct: 259 RARKEAEARVRYLAMHDALTGLPNRTLLMDRLGQAIAHARRD-HSQVGLLLLDLDHFKHV 317

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +GD +L  + RR+  +L+  D  ARL G+ F I   + N+       A  +  
Sbjct: 318 NDSLGHFIGDGLLEEVARRLRSVLRESDTPARLGGDEFVIAASNLNSPADAEILARRILT 377

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
           ++     +    + +  SIG A +       + +L+ A+ AMY AK +G      F    
Sbjct: 378 ALEPVCVVQGHNLRIGTSIGIAMYPGDGDNPASLLQAADTAMYQAKKKGRGTYRLFTRDL 437

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    +  DL  AV+  E  L Y P + L    I GLEALI+W HP  G IS + F
Sbjct: 438 SMAAERWHTLSNDLHDAVDRGEFVLHYQPQLSLDPSIITGLEALIRWQHPTEGMISPTLF 497

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + EE   +  +  ++L        +W+ Q   P + + +N++++     ++   ++  
Sbjct: 498 IPLLEEHGRMVEVGKWVLRTACAQNAAWQKQGL-PKVRMAVNLSAQQFYRGDIVATVREA 556

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T  +P  ++L  +ES+ + + + +  L+G L+ +G+ L+LDDFGT  S LSYL   P
Sbjct: 557 LEETGLAPEWLELELTESLTLDDTDTTLRLMGDLKALGVKLSLDDFGTGWSSLSYLKRFP 616

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +          AI+ SI+ +A+ ++   +A+ +  E  ++ L    C  I
Sbjct: 617 LDRIKIDRSFVRDIVNDHSTAAIVHSILDLARQLDLDCVAEGVETEEQLQHLRGERCPGI 676

Query: 936 QDSHVASPLGFNSI 949
           Q    +  +    I
Sbjct: 677 QGFLFSKAVAAADI 690


>gi|46578824|ref|YP_009632.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603569|ref|YP_967969.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
 gi|46448236|gb|AAS94891.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563798|gb|ABM29542.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris DP4]
 gi|311232687|gb|ADP85541.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio vulgaris RCH1]
          Length = 715

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 124/539 (23%), Positives = 242/539 (44%), Gaps = 15/539 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +    +      + +LG+    M G     L     +         D   G   G     
Sbjct: 186 LDGVYIGCNKAFSQLLGIPREKMVGRSARDLL---PDHAYAQIIAGDCPSGSDAGEHSCV 242

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           F +  AD   H + +     S+S G +   +G   DITE K+    I+  A  D LTG+ 
Sbjct: 243 FDILGADGHIHTLALYKSTYSDSQGQVSGIVGTFLDITELKRKEAQIVHQATHDELTGLL 302

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR      +  ++        +   ++VID+D +K IND LG A+GD +L     RI EL
Sbjct: 303 NRFGMRQHVDRLIV----GGQMSFALLVIDLDDFKTINDSLGHALGDRLLHKAAERIVEL 358

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           +    I+ R  G+ + ++L +  ++      A  +       +++   E+ ++ SIG A 
Sbjct: 359 VGSQGIVGRPGGDEYVVLLYNV-DAEAAHAMARRILDIFTDSLSVSGHEVYISLSIGIAV 417

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSEL 720
           +      ++ + K  ++AMY AK  GG   + +  +       R+ ++++L  A+E  E 
Sbjct: 418 YPEDGDDAANLFKCCDIAMYRAKEEGGARAQRYLAAMQDVITSRLALEKNLRKALERGEF 477

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P + +    + G+EAL++W       +   +F+ +AE+  +I A+  F+L    R
Sbjct: 478 VLHYQPKVDIRTGAVTGMEALVRWVRDDGTIVPPQDFIPVAEKTGLIVALGEFVLREACR 537

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            + +W+ +     + + +NI+++      L + + + ++     P  ++L  +E+ +M +
Sbjct: 538 QMHAWQKRFGR--LKMAVNISARQF-QPGLPDTVASALADAGLDPGLLELEITETTMMRD 594

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
              +  +L RL   GI++ +DDFGT  S L YL   P  ++K + S +      E    I
Sbjct: 595 LALTVSVLERLTTGGIAVAIDDFGTGHSSLYYLKTFPISSIKIDRSFVRDIPNDETDATI 654

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + +++ M +N+   I+A+ +  E  +  L  + C  +Q  + + PL  ++    ++ R 
Sbjct: 655 VTTVVSMGRNLGIGIVAEGVETEAQLDFLRSLECPEVQGYYFSKPLPPHAFEAWMENRL 713


>gi|120598899|ref|YP_963473.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sp. W3-18-1]
 gi|120558992|gb|ABM24919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella sp. W3-18-1]
          Length = 1028

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 133/552 (24%), Positives = 247/552 (44%), Gaps = 10/552 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             + GS    WDW++    V  +P    ILG  +G M     NW  ++   D+   + ++ 
Sbjct: 461  VIQGSDQGYWDWNVTTGEVQISPRFEAILGYQTGEMQLKATNWAQFVCREDQREVKKVVL 520

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
              + +    ++ E R +    +  W++ +   +  +S G  L   G   DIT+ K     
Sbjct: 521  QHLRHLTPSIELEVRCKKKSGELCWVLCKGGIVEVDSKGRALMISGTQADITQLKNHEAE 580

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A  D LTG+PNR+  LDR    +     D  L   V  +D+D +K +ND  G  VG
Sbjct: 581  LDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRL-CAVCFLDLDGFKAVNDHYGHDVG 639

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D +LV++   + ++++  D LAR+ G+ F  +     +  +       M  +I   + + 
Sbjct: 640  DQLLVAIVDNLSKIMREQDTLARVGGDEFVALF-DICSEAECTQVLERMLCAIDQTVLIG 698

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
            ++ + ++ASIG + +    +    +L++A+ AMY AK  G N  + F     R    +  
Sbjct: 699  DKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQMFDPDVDRKLLAQRK 758

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              E+L  A    E  L Y P + L   E++G EALI+W HP+ G +S S F+   E   +
Sbjct: 759  WLEELKSAFAKREFVLFYQPKVNLATGEVIGAEALIRWLHPQRGLLSPSVFLPDIEGSEL 818

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSP 825
               +  +++      I  W        I I +N++++ LL +   + ++  ++     + 
Sbjct: 819  EIPLGEWVINNAIAQIQRWYRSG--KNINISVNVSARQLLADHFYDFLKQTLANFADVNT 876

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S ++L   ES  + +   +  +L     +G+  +LDDFGT  S L+YL  +P   +K + 
Sbjct: 877  SSLELEILESAAIKDMTLAIGILKECASLGVHFSLDDFGTGYSSLTYLRQLPVSALKIDQ 936

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +      +  + I+  +I +A      +IA+ +      + L  +GC   Q   +A P
Sbjct: 937  SFVRDMLVDQDDLRIVEGVIRLASVFNLAVIAEGVETIEHGRVLATLGCQMCQGYGIAVP 996

Query: 944  LGFNSILKLLKE 955
            +  +  +     
Sbjct: 997  MTASDFMDWYDN 1008



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + + +      ++ I         A   SG   W+WD+V D  T +  +  I GL+  
Sbjct: 308 FGIARDITVQEQSAELIRKSEAGLRQAQQLSGIGSWEWDLVTDTHTWSEQVFEIYGLSPK 367

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                I                  +   +       + E     A     W+  R +   
Sbjct: 368 KAL-DIEQAQSLFPPESWQKLNHAVTQCLDT-GEPYECEAEFYRAYTSPCWIKTRGQATR 425

Query: 504 NSNGDILRYIGIANDITEQK 523
           +  G I++  G   DIT+ +
Sbjct: 426 DEQGRIIKLQGTVQDITQAR 445



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 104/336 (30%), Gaps = 36/336 (10%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
                 +++   + A + LG+I      L   +           A     + +S ++FLF
Sbjct: 4   FSRLQFIVVAVASYALLALGWIYFSDQLLL-FITDQQTVFRFSLAKGVFFVLTSALVFLF 62

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA-RITLASIVLYYTYFIIYH 329
           +       H    +         ++    S ++    A +   +TL              
Sbjct: 63  VLNAVPDRHIAPSHRAIEITFSRSVFLGQSPWFRYGIAVLFPLLTLWFAHYLTLELQARL 122

Query: 330 GMKGYERAV-------LLIPAWILIFIWFIGLWMAITKRLDNDI-----IQPALVGGLVL 377
            +  +   +          P  +   I  + ++  ++    + +       P +   +  
Sbjct: 123 LLLLFTLPISLSAIMGGFAPGLLATLISTLCVYFLVSNVEKSPLDMMLSWLPFVSLSVNG 182

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           I+I      ++  L     +  +          V  + D ++  D+    V      A  
Sbjct: 183 ILISGLSGYLRASLRKSDLNHQLLESM------VSQTTDAIFVKDLQGRYVVANQGAAAF 236

Query: 438 LGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           +G +   M G   + L        IH  D        ++ +  ++     E  ++     
Sbjct: 237 VGKSMQEMIGQNDDALFEPISAALIHQKD--------EAVLKEKKVTTHKEH-LQLKSG- 286

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                +   P+ +S G++    GIA DIT Q++S E
Sbjct: 287 LAVFQVTKGPVVDSKGEVRGLFGIARDITVQEQSAE 322


>gi|330967039|gb|EGH67299.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 730

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 147/582 (25%), Positives = 268/582 (46%), Gaps = 26/582 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++G + G   +    
Sbjct: 155 QAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAGEVLGRTAHEIGI 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +        R  +   +  +      E   R  +     + + +  ++ +N     
Sbjct: 215 WTDTV-------QREYMIDELRQKGRMHHREMNGRDKNGAPLVLDVSVEFITLNN--TAC 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   I   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 266 LLMNARDIGQLKSAQAQIQHLAYHDPLTGLPNRSLLMDRLSQQVSLLQ-HQNLRGALLFL 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + S    
Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEQV 384

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R  +A P+ L    + VT S+G        +T +++LK A+ A+Y AK 
Sbjct: 385 THQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADTALYRAKD 444

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +     +I G EAL++W
Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALARNEFHLHFQAQVDCRTNQITGAEALLRW 504

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
            HP++G +   +F+ I EE  MI  +   +L+   +       Q         + +N++ 
Sbjct: 505 QHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVSP 564

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    ++  E ++  + +     + +KL  +E +V+ N + + L +  LR +G+   +DD
Sbjct: 565 RQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMDD 624

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVET 684

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
              +  L R+GC   Q    + PL       LL+ R  L  +
Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPEFETLLQLRRQLQTS 726



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +     R  LA+  +    WD DI   R+  +   + + G+ +       R +   +
Sbjct: 27  ERILEETRARLELALDLAQMGTWDLDITHSRLQASARASFLHGMDAQPFDDDSRLFFERL 86

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +RD  R    + +  R+  LQ  +R +  D     +  R R   +  G+ ++  G  
Sbjct: 87  PAEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRARIYRDETGNPVKLAGTL 146

Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539
            DIT+Q      ++ E     AF    D++T
Sbjct: 147 LDITQQCVQAALEASEEKFAKAFHSSPDSIT 177


>gi|315500134|ref|YP_004088937.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Asticcacaulis excentricus CB 48]
 gi|315418146|gb|ADU14786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Asticcacaulis excentricus CB 48]
          Length = 707

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 130/656 (19%), Positives = 255/656 (38%), Gaps = 32/656 (4%)

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
           +   + +   R    +  +          ++        + A +      +     +T+ 
Sbjct: 57  FNLKMASEYGRALFGNKSVTTMMDTCPLTVEAETPLRDFMQATLAERASELLRGFIVTRD 116

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL----AVLGSGDI 417
                +   L     +   L    + Q  + +      + ++ ER        +     +
Sbjct: 117 GAYAGVGTTLSILKAMNDDLQDSLLQQREMVSDLI--RLSAESERHQSFLNTIIDNIPAM 174

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGP------IRNWLPYIHINDRDNFRTILDSF 471
           V   D         P    +LG+    + G                 +DR       ++ 
Sbjct: 175 VLVKDAHSRVKLINPAGEDMLGVKRSDVVGKTSHDIFPAEQADTFTRSDR-RVLASGEAV 233

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +           R R        + ++   +   +G     + +  D+TEQK +   I  
Sbjct: 234 MIEEEAIYNG-VRQRT-------VQLKKTVLRGPDGAPDSILTLGIDLTEQKAAEARIAQ 285

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LTG+ NR  +   +   L       +    +  +D+D++K +ND  G   GD +
Sbjct: 286 LAHYDPLTGLGNRTLYTHEIEQALSRVQRHGH-HLALHCLDLDRFKTVNDSFGHLAGDAL 344

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +  R+   ++  D +AR+ G+ F  I+ +          A  + + +  P ++    
Sbjct: 345 LRQVGERLRLCVRKGDFIARMGGDEFA-IIQNIERPEDARCLAERVIEVMKSPFDINGIR 403

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
           +    S+G A        ++ +L  A+LA+Y  K  G N    +          R+ ++ 
Sbjct: 404 LEAGVSVGIALAPEDAADANNLLSRADLALYRVKSEGRNGWCFYHAEMDAVVQQRLEMEH 463

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   +  L + P++ L   E+V  EAL++W HP  G +S  EF+ +AE+  +I  
Sbjct: 464 ELRTALSEQQFQLHFQPLLNLDSGEVVSFEALLRWHHPHRGMVSPGEFIPVAEDSGLIGP 523

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R    W       P  I +NI+     D  L   ++  +  +   P R++
Sbjct: 524 IGDWVLREACRQAAQWP-----TPWRIAVNISPLQFRDGSLPRLVKDALKASGLDPRRLE 578

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ESV++ + + +  +L  +R +G+ + +DDFGT  S LSYL   PFD +K + S + 
Sbjct: 579 LEITESVLLADEKHNLKILNTVRDMGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDQSFVR 638

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                +  ++I+R+I  MA+ +   I A+ +  E  ++ L  M C   Q   +  P
Sbjct: 639 DLPHDQNALSIIRAISDMAEALGVHITAEGVETEAQMEALKAMNCREAQGYLIGRP 694


>gi|311896188|dbj|BAJ28596.1| putative signaling protein [Kitasatospora setae KM-6054]
          Length = 616

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 137/571 (23%), Positives = 259/571 (45%), Gaps = 19/571 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              R   A   +G  +   D     +   P  A +LG A   + G   +    I   +  
Sbjct: 49  SESRFRAAFSDAGIGMALIDRDDLVIEGNPVFAAMLGRAVAELPGMHIH--QIIDPEEPS 106

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R      V   R R++ E R++    +  W  + +  + +  G+    + +  DITE+
Sbjct: 107 RRR--YRELVRGERDRMRAEKRLKHRGGREVWGRVTVSLVRDHAGEPYYTMVLVEDITER 164

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  + +   A  D LT +PNR  F  RL     L       R  +  +D+D +  IN+ 
Sbjct: 165 RQLGDRLAYQALHDPLTRLPNRTLFYQRLEAAFRLDEPGGGGRIGLCYVDLDGFAAINES 224

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           LG  VGD +LV++  R+          ++ARL G+ F +++       ++   A  +  +
Sbjct: 225 LGHHVGDQLLVAVAARLEHGFAREGRQLVARLGGDEFALLVTGSGGHQELTRLAGRLMDA 284

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +  P  +    +TVTASIG         T ++++++A+  +Y +K  G      +     
Sbjct: 285 LERPFEVAGHRLTVTASIGVVERPVLGSTPTDLIRDADSTLYWSKSDGRARWTLYDRDRG 344

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +  R  +   L  AVE  E  + Y P++ L D  + G EAL++W+HP++G +S   F+
Sbjct: 345 ADQLTRHRLATGLRPAVERGEFTVEYQPLVGLADGAVRGAEALVRWNHPRYGLLSPDRFI 404

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I  +  ++LE   R    W  +    P+F+ +N+A + + D+++   +  ++
Sbjct: 405 PLAEESGAIVPLGKWVLEESCRRTREWLAEFPDRPVFVSVNLAPRQIWDSDVVADVADVL 464

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      ++L  +ES ++G   R    L  L  +G+ + +DDFGT  S L+YL  +P 
Sbjct: 465 ERTGLPAPLLQLEITESALLGPAGRPLEALQALADMGVRIAIDDFGTGYSNLAYLSRLPV 524

Query: 879 DTVKFNGSLMT-------GSTEKRIA----ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            ++K + + +         +  +R A    I+ +++ +A  +  T+ A+ I      + L
Sbjct: 525 HSLKLDATFIEAFRESAPDADGRRRAADEQIVGAMVQLAHALGLTVTAEGIENAAQAERL 584

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + GCD  Q  + A P G  +I  +L+++ P
Sbjct: 585 RQTGCDTAQGWYYARPGGPETIAAILRDQPP 615


>gi|326317226|ref|YP_004234898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374062|gb|ADX46331.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1260

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 137/585 (23%), Positives = 258/585 (44%), Gaps = 18/585 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-- 440
            + V  H +     ++ +  D E   SL +  +   +WDW+I    VT       + G+  
Sbjct: 664  WLVSAHDITERKRNEDLIRDREALLSLTLSAASLGLWDWNISTGTVTGDARWRELHGMAA 723

Query: 441  ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF------HW 494
             +    G   +W   +   D +N    L+  V +        ++V  + +         W
Sbjct: 724  TAEPPGGTGVHWTSGMAPADIENVTDALERHVAHPDSHFDATWQVAPSPSAPPGAPAGRW 783

Query: 495  MIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            +    + +  +  G   R +G++ D+T Q+   + +   A  D LTG+PNR     RL  
Sbjct: 784  VRNLGKIVGYDERGRPGRMLGVSIDVTSQRVQEDMLQQLAHFDALTGLPNRVQLARRLEQ 843

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             +  +      +  V  +D+D +K +ND LG + GD +LV +  R+   L+  D +ARL 
Sbjct: 844  AMAQA-RAGGWQLGVAYLDLDGFKPVNDRLGHSAGDRLLVIVAGRLTRALRPVDCVARLG 902

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+ F +++    +          + +++A P  L    +TVTAS+G+  +      +  +
Sbjct: 903  GDEFVLLMPELQSRADAEQLLRRLMENLAAPYTLGTERVTVTASVGYTLYPEDASDADTL 962

Query: 674  LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            L++A+ AMY AK  G N V+ F       R       E +  A+   +  L   P + + 
Sbjct: 963  LRHADHAMYGAKQGGRNRVQPFDAAQERARQTLREQAERMREALARGQFMLYLQPKVDMR 1022

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
               +VG EAL +W HP  G ++   F+ + E   +  A   ++++     I   R     
Sbjct: 1023 SGTVVGAEALARWKHPGQGILAPGAFLHLIEGAELEAAFGEWVVDSALDLIEQLRA--GG 1080

Query: 792  PPIFILINIASKDLLDNELCEGMQ-ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + +NI+++ L      + +   +  +       + L  +ES  + + +     L +
Sbjct: 1081 LELPVSVNISARHLQQPGFAQWLAGRMAQRPGIPHRLLDLEITESAALYDMDHVAPQLTQ 1140

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
            LR++GI+++LDDFGT  S LSYL  +P DT+K + S + G        AI++ +I +A++
Sbjct: 1141 LRELGITVSLDDFGTGYSSLSYLRRLPMDTLKLDRSFVHGMMSDRGDYAIVQGVIGLARS 1200

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +I+A+ +  E     L R+GC   Q   ++ P+        +
Sbjct: 1201 FGYSIVAEGVETEAQGLTLMRLGCTLAQGYCISRPMPPEEFPGWV 1245



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 88/303 (29%), Gaps = 9/303 (2%)

Query: 230 GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG 289
            ++ +    L   V          R    +    +     +  L    W   V     + 
Sbjct: 9   FWLHLALVGLLAAVPPRLLAGASSRRILPVLAGLAAGAASWGSLATAAWMDAVPTAVAAL 68

Query: 290 IACI-AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
              + A               +   T  +  L      +    +  +R +    +W+ + 
Sbjct: 69  CFGLQAGAVSALVAALGSAVLLPAATPQAAGLLAVACALGLAWRLAQRRLPPRMSWLDLA 128

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
              + L +       +          L+     +     Q     G     + +      
Sbjct: 129 GLGLMLALVARAWGGHAPWAGFAGVLLLGGGAKLVLGRAQAANTLGRQQSDLNA------ 182

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +  SG   W+W +   R+     +   LG+  G     +  W    H +D +     L
Sbjct: 183 -MLDASGGGRWEWFVQERRLVCHGPVYEALGIEPGGEGCHVDRWTTLRHPDDTERLAAQL 241

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSLE 527
              V         E+R+R  + ++ W+I R +    ++ G +LR  GI  D T  ++  +
Sbjct: 242 QHMVAGLESTFSVEYRMRDTEGRWRWIISRGQVCERDAQGKVLRMAGIHLDATALRQVQD 301

Query: 528 GIL 530
            + 
Sbjct: 302 DVR 304



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
               + ++ G   ++ +    +  Q        + G+     R       +G  VW+   
Sbjct: 398 FSASRASIGGEECIVSVFQDLSATQRAHDQLAAAHGLLVQAGRM------AGLGVWEHRH 451

Query: 424 VRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRL 479
            +  V  +     I GL  G +  GP+     ++       FR  L              
Sbjct: 452 GQGLVYWSDVCFDIHGLPRGGLLPGPVEYLRDFV----AAPFRNTLADLFRRGHQNAVGW 507

Query: 480 QYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             E ++  A D +  W+ +   P+    G +    G+  DI E K++ E 
Sbjct: 508 SCEAQILRADDGRAVWVRVHAEPVL-EAGAVTGVRGVMQDIDEWKRAAER 556



 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 40/144 (27%), Gaps = 7/144 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASG 443
            V+Q +      ++ +    +R           V          +        + G+   
Sbjct: 542 GVMQDIDEWKRAAERLSQSEDRFMRIFELMPYPVLMSRRADGAYLMVNEAWERLTGIPRD 601

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G     L       R      +      R      E  +         ++  +   +
Sbjct: 602 QALGRTAVELGLFSAEGRRQLLDTM----SGRTVHNALEITIHPRTGGDRTLLQSLHA-A 656

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
             +G  +  +  A+DITE+K++ +
Sbjct: 657 ELDGTPVWLV-SAHDITERKRNED 679


>gi|319426455|gb|ADV54529.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens 200]
          Length = 1028

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 133/552 (24%), Positives = 247/552 (44%), Gaps = 10/552 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             + GS    WDW++    V  +P    ILG  +G M     NW  ++   D+   + ++ 
Sbjct: 461  VIQGSDQGYWDWNVTTGEVQISPRFEAILGYQTGEMQLKATNWAQFVCREDQREVKKVVL 520

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
              + +    ++ E R +    +  W++ +   +  +S G  L   G   DIT+ K     
Sbjct: 521  QHLRHLTPSIELEVRCKKKSGELCWVLCKGGIVEVDSKGRALMISGTQADITQLKNHEAE 580

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A  D LTG+PNR+  LDR    +     D  L   V  +D+D +K +ND  G  VG
Sbjct: 581  LDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRL-CAVCFLDLDGFKAVNDHYGHDVG 639

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D +LV++   + ++++  D LAR+ G+ F  +     +  +       M  +I   + + 
Sbjct: 640  DQLLVAIVDNLSKIMREQDTLARVGGDEFVALF-DICSEAECTQVLERMLCAIDQTVLIG 698

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
            ++ + ++ASIG + +    +    +L++A+ AMY AK  G N  + F     R    +  
Sbjct: 699  DKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQMFDPDVDRKLLAQRK 758

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              E+L  A    E  L Y P + L   E++G EALI+W HP+ G +S S F+   E   +
Sbjct: 759  WLEELKSAFAKREFVLFYQPKVNLATGEVIGAEALIRWLHPQRGLLSPSVFLPDIEGSEL 818

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSP 825
               +  +++      I  W        I I +N++++ LL +   + ++  ++     + 
Sbjct: 819  EIPLGEWVINTAIAQIQRWYRSG--KNINISVNVSARQLLADHFYDFLKQTLANFADVNT 876

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S ++L   ES  + +   +  +L     +G+  +LDDFGT  S L+YL  +P   +K + 
Sbjct: 877  SSLELEILESAAIKDMTLAIGILQECASLGVHFSLDDFGTGYSSLTYLRQLPVSALKIDQ 936

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +      +  + I+  +I +A      +IA+ +      + L  +GC   Q   +A P
Sbjct: 937  SFVRDMLVDQDDLRIVEGVIRLASVFNLAVIAEGVETIEHGRVLATLGCQMCQGYGIAVP 996

Query: 944  LGFNSILKLLKE 955
            +  +  +     
Sbjct: 997  MTASDFMDWYDN 1008



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + + +      ++ I         A   SG   W+WD+V +  T +  +  I GL+  
Sbjct: 308 FGIARDITVQEQSAELIRKSEAGLRQAQQLSGIGSWEWDLVTNTHTWSEQVFEIYGLSPK 367

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                I                  +   +       + E     A     W+  R +   
Sbjct: 368 KAL-DIEQAQSLFTPESWQKLNDAVSQCLDT-GEPYECEAEFYRAYTSPCWIKARGQATR 425

Query: 504 NSNGDILRYIGIANDITEQK 523
           +  G I++  G   DIT+ +
Sbjct: 426 DEQGRIIKLQGTVQDITQAR 445



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 105/336 (31%), Gaps = 36/336 (10%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
                 +++   + A + LG+I      L   +           A     + +S ++FLF
Sbjct: 4   FSRLQFIVVAVASYALLALGWIYFSDQLLL-FITDQQTVFRFSLAKGVFFVLTSALVFLF 62

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA-RITLASIVLYYTYFIIYH 329
           +       H    +         ++L   S ++    A +   +TL              
Sbjct: 63  VLNAVPDRHIAPSHRAIEITFSRSVLLGQSPWFRYGIAVLFPLLTLWFAHYLTLELQARL 122

Query: 330 GMKGYERAV-------LLIPAWILIFIWFIGLWMAITKRLDNDI-----IQPALVGGLVL 377
            +  +   +          P  +   I  + ++  ++    + +       P +   +  
Sbjct: 123 LLLLFTLPISLSAIMGGFAPGLLATLISTLCVYFLVSNVEKSPLDMMLSWLPFVSLSVNG 182

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           I+I      ++  L     +  +          V  + D ++  D+    V      A  
Sbjct: 183 ILISGLSGYLRASLRKSDLNHQLLESM------VSQTTDAIFVKDLQGRYVVANQGAAAF 236

Query: 438 LGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           +G +   M G   + L        IH  D        ++ +  ++     E  ++     
Sbjct: 237 VGKSMQEMIGQNDDALFEPISAALIHQKD--------EAVLKEKKVTTHKEH-LQLKSG- 286

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                +   P+ +S G++    GIA DIT Q++S E
Sbjct: 287 LAVFQVTKGPVVDSKGEVRGLFGIARDITVQEQSAE 322


>gi|301383442|ref|ZP_07231860.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
          Length = 674

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/594 (23%), Positives = 265/594 (44%), Gaps = 46/594 (7%)

Query: 403 DGERQSL---AVLGSGDIVWDW-----DIVR-DRVTTTPDIATILGLASGSMHGPIRNWL 453
             ER  L    V+ + D +        D+     V   P    I G     + G     L
Sbjct: 80  SIERLRLLESVVINANDAILITEAEPIDLPGPRIVYCNPAFLAITGFTEEEVIGRTPRIL 139

Query: 454 PYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 D       ++   + + R  ++ E      D    W+ + I P++N  G    +
Sbjct: 140 QC---EDTSRETLDVIREALTHWR-PVEVELINTRKDGSQFWVELSIVPVANEKGWFTHW 195

Query: 513 IGIANDITEQK---------------------------KSLEGILCNAFQDNLTGIPNRQ 545
           + +  DITE+K                           +  E +   AF D LT + NR 
Sbjct: 196 VSVQRDITERKESQQLTQRARLEWEEKLALQSRLQERERISEELAYIAFHDELTALFNRA 255

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             ++ L             R TV+ +D+D +K +ND +G   GD +L  +  R+   ++ 
Sbjct: 256 YLMNELADAFSNPDHHYE-RATVLFLDLDGFKVVNDSMGHLAGDQLLKRVANRLQNCVRA 314

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F I+L+ ++        A  +   +   I +  ++I ++ SIG  +   
Sbjct: 315 NDVLARIGGDEFAILLVGKDQPETAVKMAERIVSQLHAAIEIEGQDIFISCSIGIVTAGE 374

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
                 ++L++A++AMY AK +G      F  S      D ++I+  L  A+EN +  + 
Sbjct: 375 GHSKPEDLLRDADVAMYSAKKQGRGRWSLFNASMREAAIDTLVIQNALRQALENKDFLVF 434

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI     E +VG+EAL++WDHP  G IS   F+ IAE+L +I  +  +++ +   D+ 
Sbjct: 435 YQPIYSGDSEHLVGVEALVRWDHPSMGIISPDAFIPIAEDLGLIHELGAWVMHKACGDVQ 494

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +WR       + + +N++ K+L      + +  +I+ T    +++++  +ESV +  P+ 
Sbjct: 495 AWRKAFPHLDLRLNVNVSGKELSRPGFVDQVTRIIATTGLPSAQLQIEVTESVFLYQPDA 554

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
              +L ++R +G+ + LDDFGT  S L Y+   P + VK + S ++     ++  AI+ S
Sbjct: 555 IAEVLRQIRHLGVRVALDDFGTGYSSLGYIDRYPINAVKIDRSFVSRMMTYDRSQAIVSS 614

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ + + ++  I A+ +        L +MGC Y Q   +  P+   ++  +++ 
Sbjct: 615 ILSLGRALDLEITAEGVETAEQYNRLRKMGCPYFQGYFLNRPMRSEALEDVMRS 668


>gi|329848171|ref|ZP_08263199.1| morA [Asticcacaulis biprosthecum C19]
 gi|328843234|gb|EGF92803.1| morA [Asticcacaulis biprosthecum C19]
          Length = 799

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 170/790 (21%), Positives = 300/790 (37%), Gaps = 39/790 (4%)

Query: 198 VASLLAIFLTIFYMVNR----SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           V   + I LT  +        S     +  + W+ L  ++  FG  +             
Sbjct: 17  VLLAVVICLTSSFAAIHLLHWSQRAEASQRIKWLSLAGVATGFGIWATHFIAMLAYNPGI 76

Query: 254 RACSEIALSSSLII---------FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                I+L+   +I                  R  A  G               M+    
Sbjct: 77  PLGFNISLTLISLIIAIAITGSGLALAVYQPFRHAAWAGGAIAGSGIGAMHFIGMAAIEV 136

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
                 A   +A+ V+                   L  A     +      +  T     
Sbjct: 137 PAQILWAVDLVAASVVLGAGLAAAAVAVAARGNTRLHIAGATGLLVLAIASLHFTAMGAV 196

Query: 365 DI-------------IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
            I                 +   + +    +    +   L      +    +  R  L V
Sbjct: 197 TIQPDPTRITSGVQLSPTHMSTLIAVSAFSVLLGSLLAALFGQKLDKVRARNENRYRLMV 256

Query: 412 LGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
               D  +   D+  +          I G  +  + G   +   Y     +D     +  
Sbjct: 257 ESVKDYAICMLDVDGNVTDWNRAAQDIKGYKAEEILGRNFSIF-YTPQEQKDGEPRHILD 315

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              +     + E +    D    W+ + I PM + +G  + +  +  DIT +K+    I 
Sbjct: 316 LALHSGSYHEPEGQRVRKDGTTLWVDLVITPMFDEDGRHIGFSKVTRDITSRKRDEARIT 375

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR  FLD L   L ++      +  V+ ID+D +K+IND  G A GD+
Sbjct: 376 YMARHDALTGLPNRTHFLDLLDKDLAVANARGE-QVAVIGIDLDGFKEINDQNGNATGDE 434

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL  L  R+  ++   + +AR+ G+ F  ++  + ++  +  F   +  ++  P+ +   
Sbjct: 435 VLRILGTRLKSIVYGQEAIARVGGDEFVAVMRHD-DARDLEAFLERVSVALNEPMLIDNF 493

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIK 708
           E+   AS+G A +     +   +L NA+LAMY AK             +      R    
Sbjct: 494 EVKPGASLGVAIFPQDGDSRDVLLNNADLAMYRAKSGLAEKICYYESSMDEAARVRRNTA 553

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  AVEN EL L+Y     L D  IVG EAL++W HP  G +   EF+ IAEE   I 
Sbjct: 554 RDLWTAVENDELRLLYQVQRSLGDNSIVGYEALVRWQHPTRGLVPPVEFISIAEECGAII 613

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L +   D   W        I I +N++   L D +L   ++  + +T  SP R+
Sbjct: 614 EIGKWVLAQACEDAAKW-----NGDIKIAVNLSPAQLTDPDLVAFVRQALYRTGLSPRRL 668

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+V+ +  R+  +L +L+ +G+++ +DDFGT  S L  L    FD +K + S +
Sbjct: 669 ELEITESMVIADRTRALHILRQLKALGVTIAIDDFGTGYSSLDTLNAFRFDKIKIDRSFL 728

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +  +   I+R+I+ + +++E  ++A+ +  +  +  L   GC+  Q      P   
Sbjct: 729 KDSETNPQARTIIRAIVALGRSLEIKVLAEGVETKNQLDLLKLEGCEEAQGYLFGRPEAV 788

Query: 947 NSILKLLKER 956
            +    L  +
Sbjct: 789 EAAEARLLAQ 798


>gi|88859155|ref|ZP_01133796.1| putative Sensory box protein [Pseudoalteromonas tunicata D2]
 gi|88819381|gb|EAR29195.1| putative Sensory box protein [Pseudoalteromonas tunicata D2]
          Length = 1503

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 148/560 (26%), Positives = 275/560 (49%), Gaps = 15/560 (2%)

Query: 401  FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            F   E   L   A   + D V+  D       T   +       +   H   R     ++
Sbjct: 942  FESEENARLFGAAFEYTRDWVFILDKQFRVRATNQVLRESFNFNAS--HTSSRKLSLGLN 999

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             + R N+  I+           Q +  V  AD   H +II++  + + + +I  YI +  
Sbjct: 1000 KDTRLNYLRIIAKLKAGE--HFQSDEVVVTADGIAHPVIIKVSTVGDKDNNINNYIVVIT 1057

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DI+EQK + + +   A  D LT +PNR   LDR++   +LS    N R  ++ ID+D +K
Sbjct: 1058 DISEQKDAEKELRVLANYDTLTKLPNRSLLLDRISHATELSRRHKN-RLALLFIDLDHFK 1116

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ++ND LG  +GD +L+++ +R+   L+  D +ARL G+ F I++   +   ++      +
Sbjct: 1117 QVNDTLGHDLGDTLLITVAQRLKYGLRKQDTVARLGGDEFVILIEDIDTIDELIPVCRKI 1176

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             + +++P+ L    +TV  SIG A +      S ++LK+A++AMYHAK RGG   + F  
Sbjct: 1177 CEEVSLPVQLGNHRMTVEPSIGVAIFPDDADNSLDLLKSADIAMYHAKKRGGATYQFFHQ 1236

Query: 698  SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +    ++ +L  AV+ ++    Y PII   D  + G E L++W       IS +
Sbjct: 1237 EMNHKIQRKVQLENELKEAVKLNQFVNYYQPIISATDFTLKGFEVLLRWRQ-DNKLISPA 1295

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            EF+ +AE + +I  +    L R  +D+ +W    + P  ++ +N++++D     + E + 
Sbjct: 1296 EFIPVAESMGLITTLTFAALTRAMQDLKAW--LVSKPDCYVSVNLSARDFEHETIGEKLT 1353

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +I +   SP+++    +ES +M + +++   +  L++ G  + +DDFGT  S LSYL  
Sbjct: 1354 DIILQADISPTQVVFEITESALMQDSQKALEAMLILKQKGCRIYMDDFGTGYSSLSYLKR 1413

Query: 876  IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P D +K + S +    +     AI+ S + +A ++  + +A+ +  +  ++ L  +GCD
Sbjct: 1414 FPIDVLKIDQSFVADIGQDASDEAIIHSTLALAHSLGKSCVAEGVETKAQVEFLQMLGCD 1473

Query: 934  YIQDSHVASPLGFNSILKLL 953
            Y+Q    + P+  N +  LL
Sbjct: 1474 YLQGYLFSKPVPSNEVSNLL 1493



 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 5/168 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +   AL+  L + +     + +Q  L      +       R  LA+ GSG  VWDW+
Sbjct: 787 PVYLTFYALLVLLTVFIWFHRRSKMQQKL--VVAHKESQESEARLKLALEGSGSGVWDWN 844

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +   P +   LG +    H  +  +L  IH+ DR  FR     F+   +G  +  
Sbjct: 845 IESTTIYQ-PRLVNELGYSQD--HVTLDEYLNKIHLEDRAKFRIEWLEFLSTNKGSFKCI 901

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +RVR     + W     + M   N    +  G   ++T + +S E   
Sbjct: 902 YRVRHKSGYWRWYKDFGKVMVWDNQMPSKVAGTYTNMTNEFESEENAR 949


>gi|326317390|ref|YP_004235062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374226|gb|ADX46495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 745

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 241/577 (41%), Gaps = 50/577 (8%)

Query: 424 VRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                        +LG A G +  G  R    +    D +                   E
Sbjct: 169 NNRLTRCNRHFEQMLGYAPGELSEGSARQ--QHFSDADWEVMERHGHGETNGAGAGFTGE 226

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---------------------- 520
             + A D       +R +P+ +        I IA D+T                      
Sbjct: 227 MDLLAKDGSTVTCEVRSQPL-DPLFPEQGCICIAMDVTAQRKTQAELARMHAELEHQVQE 285

Query: 521 -----------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                            ++K   E I   A  D LTG+PNR    +R    + ++  +  
Sbjct: 286 RTRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQEN-G 344

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D +K +ND LG  VGD +LV + +R+  +++  D ++RL G+ F ++L  
Sbjct: 345 TPLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVSRLGGDEFILLLPG 404

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N+   A  A  ++++   P  +   E+T+  S+G A +         + ++A++AMY 
Sbjct: 405 -ANAHGAARVATKLQEASRQPYQIGHHELTMAPSMGIALFPDDGSDFDTLTQSADVAMYR 463

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F           +  +  L  A+E  +L L Y P I +   EI  +EAL
Sbjct: 464 AKLDGRNTYRFFTPEMQAQSVRALLLENALRRALERDQLRLHYQPQITIASGEIRSVEAL 523

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++WDHP+ G +S +EF+ IAE+   I  I  +++      + +W        + + +N++
Sbjct: 524 LRWDHPELGPVSPAEFIPIAEDSGQILQIGEWVMRTALAQLQAWHAMGL-EWLSMAVNLS 582

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +       L E +  ++ +T   P R++L  +E V + +P  +   + +L   G+ +++D
Sbjct: 583 ALQFRQPLLPELVSRILDETRLHPQRLELELTEGVAVDDPRSAIATMDQLHARGVRMSMD 642

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L       +K + S +          AI+ +II MA+ +     A+ + 
Sbjct: 643 DFGTGYSSLSQLKRFQIYKLKIDQSFVRDLGVDSNDRAIVSAIIRMAQALGMRTTAEGVE 702

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               ++ L + GCD  Q  + + P    +I  LL++R
Sbjct: 703 TAEQLEYLRQQGCDEAQGYYFSRPQTAEAITPLLRQR 739



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/408 (12%), Positives = 107/408 (26%), Gaps = 44/408 (10%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457
            +      Q   +  +G  +      R  V   P  A I G  ++    G     L    
Sbjct: 19  AVERLLREQQTLLDSAGVGIVFI-RQRQVVRCNPRYAEIFGYASTREAIGLSSQSLYPSS 77

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              R   R    +         + E ++R  + +  W  +  R + N        I I +
Sbjct: 78  AAFRALGRAAYPTLSLGL--PYRCECQMRRKNGRLFWASLTGRLI-NPLDTSEGSIWIVD 134

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDIDKY 576
           DI EQ+ +                        RL   +       D+    +  +  ++ 
Sbjct: 135 DIDEQRHAQI----------------------RLHAAIREKQALFDHAMVGIAFVRNNRL 172

Query: 577 KKINDVL----GIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKI 630
            + N       G A G+  L   + R  +     D  ++ R                + +
Sbjct: 173 TRCNRHFEQMLGYAPGE--LSEGSAR-QQHFSDADWEVMERHGHGETNGAGAGFTGEMDL 229

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                +          L                T+ + T       AELA  HA+     
Sbjct: 230 LAKDGSTVTCEVRSQPLDPLFPEQGCICIAMDVTAQRKT------QAELARMHAELEHQV 283

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-HPKW 749
              + ++S           D     E       Y P+  L +  ++   A        + 
Sbjct: 284 QERTRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQEN 343

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           G   +  F+ +     +  ++   + + +  +I             + 
Sbjct: 344 GTPLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVS 391


>gi|78355579|ref|YP_387028.1| response regulator receiver /GGDEF/PAS/PAC domain-containing
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217984|gb|ABB37333.1| response regulator receiver (CheY-like) modulated diguanylate
           cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 715

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 132/578 (22%), Positives = 252/578 (43%), Gaps = 17/578 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++         Q +  +  +   A+     + V+   +  + +        ILG    
Sbjct: 147 GELRESNERLLEFQSLLQEKNQFLEALIESMPNPVFFKSLEGEYLGCNAAFCRILGKPKE 206

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPM 502
            + G     L      +    R +    +   + R       +   D     +++     
Sbjct: 207 DIVGRRAEDLL---PEEVA-CRVLEGGVLSGAQERAHSCTITMLGDDGGPLQLVLYKSFF 262

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            N  G+    +G  +DITE KK    I   A+ D LTG+ NR    D +    D      
Sbjct: 263 QNRAGENAGVVGTFHDITELKKKEAQIYHQAYHDELTGLANRVRLKDAIA---DRIRLGG 319

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    V+++D+D +K +ND LG  VGD +L+  +RR+ +++    +LAR  G+ F ++L 
Sbjct: 320 DGGLAVLMLDLDNFKNVNDSLGHGVGDKLLLEASRRLRDVVGPQPLLARTGGDEFALLLD 379

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +       A  +  +  +P  + E E+ +T SIG   W      +  ++KNA++AMY
Sbjct: 380 GCKDV--ANRLAAKVLDAFTVPFVIDEHELYITISIGLTCWPEDGADADSLVKNADVAMY 437

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G +    F        + R+ I++ +   +E  E  + Y P I + +  +VG+EA
Sbjct: 438 KAKEQGRSRCLHFDAEMTEQVTRRLSIEKSIRKGLERDEFQVYYQPRINIFNGRLVGMEA 497

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W       +S +EF+ +AEE  +I A+   +L      +  W D+     + + +NI
Sbjct: 498 LVRWVPEHGAVVSPAEFIPVAEETGLIVALGERVLRLACAQMRIWADR-GWGDLRMSVNI 556

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++      L E + A +  +  SP  ++L  +E+ +M +  ++ LLL +L  +G+ + +
Sbjct: 557 SARQF-QANLTERVAAALRDSGISPDSLELEITETTMMRDIGQTVLLLEQLNGMGLKIAI 615

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL   P  T+K + S +      +    I+ +II M  N+   ++A+ +
Sbjct: 616 DDFGTGHSSLYYLKRFPISTLKIDRSFVRDIMKDDGDANIVSTIITMGHNLSLNVVAEGV 675

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  +  L   GC  +Q  + + P+        +   
Sbjct: 676 ETDEQLAFLRDKGCVEVQGFYYSRPVPAAEFEDFVLRH 713


>gi|296282038|ref|ZP_06860036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Citromicrobium bathyomarinum JL354]
          Length = 774

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 156/762 (20%), Positives = 291/762 (38%), Gaps = 41/762 (5%)

Query: 199 ASLLAIFLTIFYMVNRS-SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
            ++L     +     R  +  +P+            +   +                   
Sbjct: 6   MAILGERNLLLAWRLRELTSHLPSLCALHSFAALACVVALWGHPAATYGLPW-------- 57

Query: 258 EIALSSSLIIFLFMYLHWN--------RWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309
             A + +   F    L  +            K               + +       T  
Sbjct: 58  --AATIAFCNFRQWRLSLDFYPDTIDVTHLRKFHRELQIAANTETAFWVLGAVVFFPTLF 115

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
            A     +++            +     +       ++    +   M       + ++  
Sbjct: 116 NAHPVFFAVLTAGLLASSVIAYRSMPAPLTSYLGGAMLAAAVLSFTMRDEFSWPSLMLAL 175

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           A    L+      G    Q         +   +           S D +W+ D     + 
Sbjct: 176 AFGYALIRSTRRQGRQFEQSCREQFDQRRTAETVKLLLHEYEESSSDWLWEVDEGNCLMN 235

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                    G+    + G     L       R+   T+L   V +R   L+         
Sbjct: 236 VCERFGHAAGVDRDFLEGRELVGLFDAGPA-RERLATLLLDRVRFRDLALEITV-----G 289

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            +  W  I   P S+ +       G+  D+TE +++ + +   A  D LT + NR  F +
Sbjct: 290 TEKRWWTISGNPASDGS-----VRGVLRDVTESRQTEQRVARMARYDQLTELANRHLFNE 344

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L  +L  + T    R  ++ ID+D +K +ND LG  VGD ++ +  RRI  +++  D+ 
Sbjct: 345 SLNEML--AGTGRRRRIALLYIDLDHFKSVNDTLGHHVGDGLVRAAARRILGVIREHDLA 402

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F ++L    N   +   A  + +++A P N+  + + V+AS+G        I 
Sbjct: 403 ARLGGDEFAVLLTRVRNLEAVHQCAERIVEAMAQPFNIDGQTVRVSASVGVGYSEDDSID 462

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
             E+++ A+LA+Y AK  G +    +    +     R  ++ DL  A+   +  LVY P 
Sbjct: 463 GEELMRQADLALYAAKRAGRSTFADYDPSLNHNEHARRNLELDLRTAITEGQFTLVYQPQ 522

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L   +  G E L++W+HP  G I   EF+ IAEE  +I  +  +++ +   +  SW  
Sbjct: 523 VCLKTGKWTGKETLVRWEHPVRGRILPGEFIDIAEETGLIIPLGEWIIRQAIEEAASW-- 580

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P  I IN++   + +  L   +   I +    P R+++  +ES +M + E +  L
Sbjct: 581 ---DEPHRIAINLSPVQMCNPNLVTVLTNAIVEAQIDPQRVEIEITESALMHDSESNVEL 637

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPM 905
           L RLR +G+ + LDDFGT  S L+YL   PFD +K +   ++   E+    AI+R++I +
Sbjct: 638 LHRLRDLGVRIALDDFGTGYSSLNYLRAFPFDKIKIDRCFVSEMLERADCQAIVRNVIML 697

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           A+ +     A+ +  +     L R GC   Q  +++ P+   
Sbjct: 698 ARALGMETTAEGVETKEQYDWLKRHGCQEAQGYYISRPMESE 739


>gi|332533971|ref|ZP_08409823.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036607|gb|EGI73073.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 696

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/569 (24%), Positives = 260/569 (45%), Gaps = 14/569 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +            + +          D+ +        +       T L        G 
Sbjct: 130 DLSEVKKAQADASFNEDMLKTIFEAIPDLFFLMKNDGTIIEYHASNETDLYTKPKQFIGK 189

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                  +  +  + F T +   +  +   + +++ +        +   RI  ++  N  
Sbjct: 190 KMG--DVLPRDVAEKFETYISLVLE-KEQMMSFKYELALPHG-LVFFEARINKITEHN-- 243

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             + + I  DITEQ KS E I   A+ D+LT +PNR   LDRL+ +L  +  + N +  V
Sbjct: 244 --QLMVIIRDITEQHKSDEIIRHQAYYDSLTLLPNRFLALDRLSQLLIEAQRN-NEKAAV 300

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D +KKIND LG   GD +L+   +R+ E L+  D + RL G+ F ++L    +  
Sbjct: 301 LFLDLDDFKKINDSLGHETGDKLLIESAQRLQEALRKDDTVGRLGGDEFIVLLRGITDHH 360

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                   +  +   P  +  RE  +TASIG A +  +  T +++L+NA+ AMY AK  G
Sbjct: 361 AALKITEKLLNNFRAPFKIEGREHILTASIGVAIYPENGTTVADLLRNADTAMYQAKSYG 420

Query: 689 GNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F        +  +  +E +  A+E +E  L Y P     ++ I+G EAL++W +
Sbjct: 421 RNTYSFFTKKMNVIIQRRLVIEEQMRDALERNEFELFYQPQFDAKNKHIIGAEALLRWHN 480

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDL 805
           P  GN++  EF+ IAE   +I  I  F++ +    + +W+          + +N++ +  
Sbjct: 481 PVLGNVTPDEFIPIAENTGLIVPIGKFVISQALHFLNTWQSTCKRQQKYTMAVNLSPRQF 540

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D  L   +Q  +S+   +P  ++L  +E V+M        +L  +  +GI+L++DDFGT
Sbjct: 541 RDVGLLSFIQNSLSEANVNPESLELEITEGVLMSCHTNVVDILTEITALGINLSMDDFGT 600

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PF+ +K + S + G     +   ++++II M+ ++  T++A+ +  +  
Sbjct: 601 GYSSLSYLREYPFNVLKIDRSFIDGIVLNNEDCNLVKAIIAMSHSLGLTVVAEGVETKEQ 660

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
              L  +GCD++Q  + + P+     L  
Sbjct: 661 HTLLNELGCDFMQGFYFSKPIPAKQFLDF 689



 Score = 39.5 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 4/108 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479
           +D  R  +        + G       G        I      +        +V       
Sbjct: 35  YDNERRVIYWNEGSERLYGYTKEEAIGQKIE--DLIIPEPMCEFVIDAHSDWVEKDIEIP 92

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             E  ++  D +   +      M  +  +  +   I  D++E KK+  
Sbjct: 93  ASEITLKGKDGESVSV-FSSHVMFTNQYNTKQMYCIDIDLSEVKKAQA 139


>gi|209526785|ref|ZP_03275306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Arthrospira maxima CS-328]
 gi|209492746|gb|EDZ93080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Arthrospira maxima CS-328]
          Length = 1276

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 275/639 (43%), Gaps = 85/639 (13%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIR 450
                  Q +    ER  + V  S D +  +      V        +LG      + G   
Sbjct: 629  RQREAEQALRESEERYRMLVELSPDTIAIY-CDDQIVYINRAGVELLGAKQPEDIIGRSI 687

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIRPMSNSNG 507
                     D D    IL+  +     +     +E ++   D     + I   P +N +G
Sbjct: 688  YDFV-----DYDQTTVILNQELTGEAKQQSATLFEQQLIRLDAAIIDVEIAGIP-TNYHG 741

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                   I  DI+++K++   +L  AF D LT +PNR  F  +L+  L  S  D N +  
Sbjct: 742  R-DAIQIIIRDISDRKQAQAQLLHAAFYDPLTELPNRSLFNQKLSEALRRSKEDSNYQFA 800

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENN 626
            V+ +D+D++K +ND LG  +GD +L+ +  R+   +    D +ARL G+ F I++   ++
Sbjct: 801  VLFLDLDRFKVVNDSLGHVIGDFLLIEIAHRLEICVTSPGDTIARLGGDEFTILMDHISD 860

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS---------------KITSS 671
              +  + A  + + ++ P  +   EI  TASIG                           
Sbjct: 861  PKQALELAEKIHRELSQPFYIEGHEIFTTASIGIVPSRGCTFKKGAETDNYHCLLYNNPE 920

Query: 672  EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA--------------- 714
            + L++A++AMYHAK RG    E F   + +     + ++ DL  A               
Sbjct: 921  DFLRDADIAMYHAKERGKARSEVFDLSMHTQTLALLQLETDLRKAIFGSAQLNVALNHIS 980

Query: 715  ---------------------VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                                    ++  + Y PI+ L+   IVG EAL++W HP+ G +S
Sbjct: 981  SSESNPLASAISDVSVIPSQLPSLNDFIIHYQPIVCLITGRIVGFEALVRWRHPRRGLVS 1040

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM---------PPIFILINIASKD 804
             +EF+ +AEE  +I  +  ++LE   R + SW+ Q              + I +N++ K 
Sbjct: 1041 PAEFIPVAEETGLIVPLGAWVLEESCRQLSSWKQQLKNWERSPQSVSSHLTISVNLSGKQ 1100

Query: 805  LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            L    L + + A++++T   P  +KL  +ES+++ N + + ++L +L+   I L +DDFG
Sbjct: 1101 LNQLNLIQQIDAILARTNCDPKSLKLEITESMLVENFQTALIVLAQLKARKIHLAIDDFG 1160

Query: 865  TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----------RIAILRSIIPMAKNIETTII 914
            T  S LSYL  +P  ++K + S +    E+             I+++II +A N+   + 
Sbjct: 1161 TGYSSLSYLHQLPLKSLKIDQSFVQRLEEEPSNYIDQYSQPQQIIKAIISLAHNLGLEVT 1220

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            A+ I     ++ L  +GCDY Q    + PL      +L+
Sbjct: 1221 AEGIETRQQMQFLHNLGCDYGQGYLFSKPLPAEEATQLM 1259



 Score = 81.9 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGL 440
              I H+LAT    Q      +    A+  S + +   D        +        I G 
Sbjct: 312 LEAIAHILATAIERQRADERLKLMERAINSSRNGIIITDATESDNRVIFANSGFEKITGY 371

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G    +L     +        L S +   R     E +    D    W  + I 
Sbjct: 372 SRHQVIGRNCRFLQGRDSD--PKALAELRSAIEEGREC-NIELKKYRPDGSSFWNELSIS 428

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
           P+ N+ G +  +IGI  DI+++K++  
Sbjct: 429 PVYNNQGFLTNFIGIQTDISDRKQAEA 455


>gi|157374772|ref|YP_001473372.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
 gi|157317146|gb|ABV36244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella sediminis HAW-EB3]
          Length = 1447

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 264/565 (46%), Gaps = 23/565 (4%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        +   +     G   N+      
Sbjct: 884  HAEEQLRLFERAIANISEGMFILDSNFHFVEVNEACCELSMTSRDQFIGKQLNF------ 937

Query: 459  NDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             DR  +++   + S + +++G    E      D     M + +  + +  G +  Y+G+ 
Sbjct: 938  -DRYPESYSDQIRSIL-HQQGSWSNEVESAKGDGSSFLMELTVDAIYDELGQLSHYVGVF 995

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+ +K+  E +      D LT +PNR S +  L  ++       +   T+MV+D+D +
Sbjct: 996  SDISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DSHHTLMVLDLDNF 1050

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            KKIND LG  VGD++L+ + +RI + + F   + RL G+ F I++ +  +    A  A  
Sbjct: 1051 KKINDSLGHQVGDELLIKVAKRIEDTVPFHTSIYRLGGDEFAILVDNNPDIGSSAVIANK 1110

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  +   P  L   ++ V  SIG   +         +L+ A++AMYHAK  GGN  + + 
Sbjct: 1111 VIDAFVSPFELTSDKVVVGLSIGIVLYPEDDQNEQALLRKADIAMYHAKSGGGNRYQFYS 1170

Query: 697  VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             S  R+    ++ +  +   + +    + Y P I L   ++ G+EAL++ +HP+ G I  
Sbjct: 1171 ESLNRNAIRQLEVENLIREGLRDDLFEVYYQPKIDLKSGKMAGMEALVRLNHPEQGLIPP 1230

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            SEF+ +AEE  +I  I   ++++       WR Q       + +N++S      +L + +
Sbjct: 1231 SEFIPLAEENGLIVEIGDLVMKKACFAAQKWRSQGIF-DGRVAVNLSSYQFALPDLQQRI 1289

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL 
Sbjct: 1290 ESILRLTQLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLK 1349

Query: 875  YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C
Sbjct: 1350 RFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEDASQLSILKALKC 1409

Query: 933  DYIQDSHVASPLGFNSILKLLKERF 957
            + IQ    +  +  +    LL + F
Sbjct: 1410 EEIQGFIFSRAVTESQFTTLLHKEF 1434



 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           L     +   + +       +   A    L+L  ++I   +++ VL        I    E
Sbjct: 707 LTLKKGVTKSLKVIITPPWWLSTQAKFIYLML-ALIISGAIVKAVLRRREVQNQIAKSEE 765

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  L++ GSGD +WDWDI   ++  +    + L                 IH  D++   
Sbjct: 766 RLKLSLWGSGDEMWDWDIETGQIYRSNIWGS-LEFPRDGQRSGENGEESNIHPMDQERVS 824

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
           + L++    +    +  +RV+   +++ W++ R + +  + N + LR  G   +I   K 
Sbjct: 825 SALNNHFYGKTDHFEAAYRVKGKSDEWVWILDRAKIVERDENDNALRMTGTIKNINNFKH 884

Query: 525 SLEGIL 530
           + E + 
Sbjct: 885 AEEQLR 890


>gi|295835411|ref|ZP_06822344.1| sensory box/GGDEF family protein [Streptomyces sp. SPB74]
 gi|197696504|gb|EDY43437.1| sensory box/GGDEF family protein [Streptomyces sp. SPB74]
          Length = 716

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 254/581 (43%), Gaps = 17/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                  + A     + +     R      G+   +   D+    V     +A + G   
Sbjct: 134 EAISRAALGARAAVERALHVSEARFRAVFEGAALGISIADMDGVIVEANDALAGMFGGLV 193

Query: 443 GSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            S+ G  +R W    H +D  N   + +  V   R   Q E      D    W  + +  
Sbjct: 194 SSLRGTNVREWA---HPDDSANVWRLYEELVTGTREYFQAEKPFYRHDGTVLWTNLTVSL 250

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +  G  L  + +  D TE++     +   A  D LTG+PNR  F +RL   L      
Sbjct: 251 LRDDQGSPLYQLALLEDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLDKAL---QAG 307

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGII 620
           +N R  +  +D+D +K +ND LG   GD +LV +  R+         I+AR+ G+ F  +
Sbjct: 308 ENDRFGLCYLDLDGFKTVNDSLGHDAGDRLLVEVADRLQGCAGGGGEIVARIGGDEFVAL 367

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAEL 679
               +   ++ + A  M ++++ P+ +  RE+TV  SIG        +   +E+L++A++
Sbjct: 368 TTGPSAREEVHELAGRMMQALSSPVRVDGRELTVRGSIGIVEGPGGGRRGPAEVLRSADI 427

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            MY AK  GGN  E     +         +   L  A+E  E ++ Y P++ L D  + G
Sbjct: 428 TMYRAKAAGGNRYEVADPEADARAITRHGLTTSLPAALERGEFFIEYQPLVDLGDGTVHG 487

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFI 796
            EAL++W HP+ G I    F+ +AE   +I  +  ++L++ AR    W+++   P P+ +
Sbjct: 488 AEALVRWSHPQHGTIGPDRFIPLAEHTGLIVPLGRWVLDQSARQARLWQEEHGGPAPLRV 547

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L    L      ++ +T   P  + L  +ES ++G  +     L RL ++G+
Sbjct: 548 NVNLSPCQLQHPRLVADTVEILERTGLPPGALCLEVTESALIGADDDLLKPLRRLAEMGV 607

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIET 911
            + LDDFGT  S L+ L  +P   +K + +   G          + I+  I+ +A +++ 
Sbjct: 608 DIALDDFGTGYSNLANLRRLPVSVLKLDRAFTQGMQQFPADPVDLKIVEGIVALAHSLDL 667

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +  + +       +L  +GCD  Q  + A P     + +L
Sbjct: 668 AVTVEGVETSAQADQLRELGCDTAQGWYYARPGPAARVREL 708


>gi|119943931|ref|YP_941611.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119862535|gb|ABM02012.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 539

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 133/536 (24%), Positives = 250/536 (46%), Gaps = 14/536 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                     I G ++  + G            D+  ++ + +S         + E   R
Sbjct: 3   HFYVEQGFTRISGYSAEEVIGQTPKLFSS-GRQDKVLYKAMWNSI--NTTDAWEGEIWNR 59

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             +   +   + I  + ++   I  Y+    DIT  K + E I   A+ D +T +PNR  
Sbjct: 60  RKNGDTYLAHMTIASVRDTGKMISNYVATITDITLNKAASEKINNLAYFDQITQLPNRLL 119

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            +DRL   L  SA   N    ++ ID+++ K IN+  G +VG+ +L  +T R+ ++++  
Sbjct: 120 LVDRLNLALAESA-HSNHHGALLFIDLNQLKIINNTHGYSVGNLLLKEVTARLTQIVRKA 178

Query: 607 DILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           D +ARLSG+ F I+L   +        +I + A  +   +  P  L   +   T SIG  
Sbjct: 179 DTIARLSGDEFVILLEKLSERDIEANTEIQNIAKKIIFLLTQPYQLNMHKYRGTISIGAT 238

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +  ++  S ++LK A++AM+ ++  G N +  F  +   +      ++ +L  A+E+++
Sbjct: 239 IFNGNEFASEKLLKQADIAMHQSRLAGHNRLCFFNQTMQEAITARAEMEHELREAIEHNQ 298

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y   +     + +G EALI+W HP+ G IS   F+ +AEE  +I  I  ++L    
Sbjct: 299 FQLYYQIQVS-SSGQALGAEALIRWQHPEDGYISPFNFIPLAEETGLILPIGEWVLNTAC 357

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             +  W+ +     + + +N+++  +   +  E +++++ K   +P R+KL  +ES+++ 
Sbjct: 358 AQLKKWQKKPLTQDLVLAVNVSALQIHQEDFVEQLKSILQKHEITPERLKLELTESMLVE 417

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           N       +  LRKIG+  +LDDFGT  S L YL  +P + +K + S +          A
Sbjct: 418 NVSGIITKINTLRKIGVLFSLDDFGTGYSSLQYLKKLPINQLKIDQSFVRDLLTDTNDRA 477

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+R+II M+ N+   +IA+ +      + L   GC   Q    + P+  +    L+
Sbjct: 478 IVRTIITMSHNLGINVIAEGVETVEQRQYLLSEGCMNYQGYLFSKPVPIDEFEALI 533


>gi|222109704|ref|YP_002551968.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax ebreus TPSY]
 gi|221729148|gb|ACM31968.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax ebreus TPSY]
          Length = 696

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 131/582 (22%), Positives = 267/582 (45%), Gaps = 16/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++  F +I  +       + +    ER     + + + +  +      +     +  ++
Sbjct: 125 AMVGAFVLINDITHHWEAERAVRQSEERMRKFAIATEEGL-AFHRDGRILDANEALQRMV 183

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   + G             R      L      R     YE  +R  D +   + + 
Sbjct: 184 GYSLAELVGQSIFDFAL--PEYR-----ALAVEYTRRGSEKPYELAMRHKDGRVIPIEVV 236

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + M    GD    + +  DIT +K++ E        D LT +PNR+  + +L   +  +
Sbjct: 237 GKTMPQQEGD--YRVVVVRDITARKQAQEQARFLVLHDTLTQLPNRRHLMMQLAR-MASA 293

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A +   R  V+ ID+D +K +N+ LG   GD +L+ + RR+ + +K  D +AR+ G++F 
Sbjct: 294 AQERQTRAAVLFIDLDHFKTVNESLGNQAGDQLLIEIARRLQDGVKATDFVARVGGDQFI 353

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    N    A+ A A+   +     +    ++++ SIG + +     +  E+L+ A+
Sbjct: 354 VLLPDLANRAAAAEVADALLARVRAEFAIGGTPLSLSPSIGISVFPDDGYSPDELLRRAD 413

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM+H K  G      +   +    ++ +  +  L  AV      L Y P +R+ D  +V
Sbjct: 414 AAMHHTKESGRGTRMFYEPGMEGQPTELLQQEHLLREAVFQGAFALHYQPQVRVADGRLV 473

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G +   EF+ +AE   +I  I  ++L    R + +W D+   P + +
Sbjct: 474 GFEALVRWRHPVRGLVGPDEFIPLAESRGLITPIGRWVLHEACRQLKAWHDEGL-PRVPV 532

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++ +    ++   +  ++     +P  +++  +ES +M   + +R  L  L+ +G+
Sbjct: 533 AVNLSAIEFRQRDVVGEIAQVLQSAGLAPQYLEVEITESALMQQADHTRTTLQALQALGV 592

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           ++T+DDFGT  S L+YL   P D +K + S +T +    + +AI+ +II +A +++   +
Sbjct: 593 AVTVDDFGTGYSSLAYLKRYPLDKIKVDRSFVTDTPADSEDVAIVTAIIQLAHSLQLQPV 652

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +     +  L R+GC+  Q   +A P+      + L+ +
Sbjct: 653 AEGVETAEQLALLRRLGCELAQGFGIAPPMDAQRAREWLRAQ 694


>gi|313499625|gb|ADR60991.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 562

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/562 (24%), Positives = 263/562 (46%), Gaps = 18/562 (3%)

Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
              AV  +   ++ + D+  +         +I G +   + G     L   +H  +   F
Sbjct: 5   YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPTFF 60

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523
             +  + V  R    + E   R+ D   +W+   + P+ +   G + +Y+ I  D+TE++
Sbjct: 61  VGMWRALVAGR--VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKR 118

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +      D LTG+PNR    D L   L  S   + +   V ++D+D +K +ND  
Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRR-EGISLAVCMLDLDGFKAVNDGY 177

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +LV + +R+  +L+  D +ARLSG+ F + L   ++  ++      + +++A 
Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLTLRDVDDEHQLHAALQRVLRALAA 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E  ++++ASIG   +      +  ++++A+ AMY AK RG N    F        
Sbjct: 238 PCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                    +  A+ N EL L Y P + L   +++G E L++W  P  G +   +F+   
Sbjct: 298 KATHQTVARVRRALRNGELCLYYQPKVNLRSGKVLGFEGLLRWQRPGRGVVPPGDFLPWV 357

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ +    + +W+ Q    P  + +NIA++ L  ++  E +Q L++  
Sbjct: 358 EQTDLIVEIGEWVIGQALSQLQAWQRQG--QPWSLSVNIAARHLQRSDFAERLQQLLAAY 415

Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+ + L   ESV + N +     L   R +G+  +LDDFGT  S LSYL  +P  T
Sbjct: 416 PAVDPALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      +  +A+  ++I +A+     +IA+ +      + L  +GC+  Q  
Sbjct: 476 IKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535

Query: 939 HVASPLGFNSILKLLKE-RFPL 959
            +A P+  + +    K  R P+
Sbjct: 536 CIARPMPASDVQAWAKAYRQPV 557


>gi|146293015|ref|YP_001183439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella putrefaciens CN-32]
 gi|145564705|gb|ABP75640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella putrefaciens CN-32]
          Length = 1028

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 133/552 (24%), Positives = 247/552 (44%), Gaps = 10/552 (1%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             + GS    WDW++    V  +P    ILG  +G M     NW  ++   D+   + ++ 
Sbjct: 461  VIQGSDQGYWDWNVTTGEVQISPRFEAILGYQTGEMQLKATNWAQFVCREDQREVKKVVL 520

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
              + +    ++ E R +    +  W++ +   +  +S G  L   G   DIT+ K     
Sbjct: 521  QHLRHLTPSIELEVRCKKKSGELCWVLCKGGIVEVDSKGRALMISGTQADITQLKNHEAE 580

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A  D LTG+PNR+  LDR    +     D  L   V  +D+D +K +ND  G  VG
Sbjct: 581  LDKVANYDALTGLPNRRLLLDRFKQAISRVNRDGRL-CAVCFLDLDGFKAVNDHYGHDVG 639

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D +LV++   + ++++  D LAR+ G+ F  +     +  +       M  +I   + + 
Sbjct: 640  DQLLVAIVDNLSKIMREQDTLARVGGDEFVALF-DICSEAECTQVLERMLCAIDQTVLIG 698

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
            ++ + ++ASIG + +    +    +L++A+ AMY AK  G N  + F     R    +  
Sbjct: 699  DKNLRLSASIGVSLYPEDNVDPDILLRHADHAMYMAKAAGKNCFQMFDPDVDRKLLAQRK 758

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              E+L  A    E  L Y P + L   E++G EALI+W HP+ G +S S F+   E   +
Sbjct: 759  WLEELKSAFAKREFVLFYQPKVNLATGEVIGAEALIRWLHPQRGLLSPSVFLPDIEGSEL 818

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSP 825
               +  +++      I  W        I I +N++++ LL +   + ++  ++     + 
Sbjct: 819  EIPLGEWVINTAIAQIQRWYRSG--KNINISVNVSARQLLADHFYDFLKQTLANFADVNT 876

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S ++L   ES  + +   +  +L     +G+  +LDDFGT  S L+YL  +P   +K + 
Sbjct: 877  SSLELEILESAAIKDMTLAIGILKECASLGVHFSLDDFGTGYSSLTYLRQLPVSALKIDQ 936

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +      +  + I+  +I +A      +IA+ +      + L  +GC   Q   +A P
Sbjct: 937  SFVRDMLVDQDDLRIVEGVIRLASVFNLAVIAEGVETIEHGRVLATLGCQMCQGYGIAVP 996

Query: 944  LGFNSILKLLKE 955
            +  +  +     
Sbjct: 997  MTASDFMDWYDN 1008



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + + +      ++ I         A   SG   W+WD+V +  T +  +  I GL+  
Sbjct: 308 FGIARDITVQEQSAELIRKSEAGLRQAQQLSGIGSWEWDLVTNTHTWSEQVFEIYGLSPK 367

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                I                  +   +       + E     A     W+  R +   
Sbjct: 368 KAL-DIEQAQSLFTPESWQKLNDAVSQCLDT-GEPYECEAEFYRAYTSPCWIKTRGQATR 425

Query: 504 NSNGDILRYIGIANDITEQK 523
           +  G I++  G   DIT+ +
Sbjct: 426 DEQGRIIKLQGTVQDITQAR 445



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 109/338 (32%), Gaps = 40/338 (11%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
                 +++   + A + LG+I      L   +           A     + +S ++FLF
Sbjct: 4   FSRLQFIVVAVASYALLALGWIYFSDQLLL-FITDQQTVFRFSLAKGVFFVLTSALVFLF 62

Query: 271 MYLHWNRWHAKVGYITF--------------SGIACIAILFCMSFYYPMVTASIARITLA 316
           +       H    +                      IA+LF +   +     ++      
Sbjct: 63  VLNAVPDRHIAPSHRAIEITFSRSVFLGQSHWFRYGIAVLFPLLTLWFAHYLTLELQARL 122

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGL 375
            ++L+     +   M G+   +L      L   + +     +    + + +   +L    
Sbjct: 123 LLLLFTLPISLSAIMGGFAPGLLATLISTLCVYFLVSNVEKSPLDMMLSWLPFVSLSVNG 182

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +LI  L G+  ++  L     +  +          V  + D ++  D+    V      A
Sbjct: 183 ILISGLSGY--LRASLRKSDLNHQLLESM------VSQTTDAIFVKDLQGRYVVANQGAA 234

Query: 436 TILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             +G +   M G   + L        IH  D        ++ +  ++     E  ++   
Sbjct: 235 AFVGKSMQEMIGQNDDALFEPISAALIHQKD--------EAVLKEKKVTTHKEH-LQLKS 285

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                  +   P+ +S G++    GIA DIT Q++S E
Sbjct: 286 G-LAVFQVTKGPVLDSKGEVRGLFGIARDITVQEQSAE 322


>gi|330859065|emb|CBX69423.1| hypothetical protein YEW_KB43890 [Yersinia enterocolitica W22703]
          Length = 567

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 138/570 (24%), Positives = 267/570 (46%), Gaps = 17/570 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +    A       + +  ER       + D +W+ D        +    TI GL+     
Sbjct: 1   MTEARAADENKAALIASEERFRHVAEAATDWLWETDADLRITYLSQRFLTITGLSVEHWL 60

Query: 447 GPIRNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   + L      D    R+ L  + +   R  LQ  +   +A        I  +P+  +
Sbjct: 61  GRNLDSLLNC---DVIPLRSWLQYTHLTESRNELQCTY--FSAKGDKRICRIYAKPIIKN 115

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           + +I  + G A+DIT + ++ E I   +  D LTG+PNR    + L   L   A   +  
Sbjct: 116 DQNI-GFRGTASDITREIEAQERIQHLSLHDALTGLPNRLRMKEFLENKLHNLAAAPHP- 173

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +D+DK+K +ND  G   GD VL  ++ R+   L+  D++AR  G+ F +I+   +
Sbjct: 174 LVILNVDLDKFKPVNDTFGHVAGDQVLHQVSERLRSCLRDQDLVARQGGDEFILIISGLS 233

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++ +I      +   I  P  + E++I ++ASIG A      + + E+L+ A++AMY AK
Sbjct: 234 STKEIEQLCARVIARIESPYLINEKDIFISASIGIALAPQDSMQAEELLRFADIAMYEAK 293

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           + G N    +             ++  L  A++++E  L Y P  R+   ++ G EAL++
Sbjct: 294 NSGSNRWSFYSSEMNDRLMQRSELERFLRQAIKHNEFSLYYQPRYRIKGTQLTGAEALVR 353

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP  G +   +F+ +AEE  +I AI+ + + +  +D  +W        + I +NI++ 
Sbjct: 354 WNHPVLGLLMPDQFIALAEETGLITAISDWTMLQACQDAATWPAS-----LIISVNISAI 408

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           +     L E ++ ++  +     R++L  +E +++ + + +   +  L+ +G+ L++DDF
Sbjct: 409 EFRSQRLIERVRQVLLLSGLPSHRLELEITERIMIEDADGAFKTMTALKALGVRLSMDDF 468

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   PFD +K + S +     + +  +I+  II +   +  T+ A+ +   
Sbjct: 469 GTGYSSLNYLRRFPFDGLKIDKSFIDELTQSHEGRSIVEGIINLGHALSMTVTAEGVETT 528

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             ++ L  + CD  Q   +  P+  + +L 
Sbjct: 529 EQLEHLQTLMCDEAQGYLLGKPMKLSELLN 558


>gi|218895683|ref|YP_002444094.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218544852|gb|ACK97246.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 567

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 12  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 68

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 69  KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 126

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 127 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 181

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 182 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+    +    +LKN++LAMY AK +G N   
Sbjct: 241 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAAC 300

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 301 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 359

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I+ SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 360 IAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 417

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 418 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 477

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 478 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 537

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 538 QSMSCDYVQGFYYAKPLSVGELKEKL 563


>gi|148255842|ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146408015|gb|ABQ36521.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 907

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 153/630 (24%), Positives = 279/630 (44%), Gaps = 35/630 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +++             R     +    V  ++LI  ++   V + +      +Q +  + 
Sbjct: 286 LIVTATTTVSAALADWREQMRFLIGVGVTSVLLIAGMLYVVVRRLISDHEASNQRLTLEK 345

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HI----- 458
           ER   AV      +  +D     V +      + GL++  +  P   +   I H      
Sbjct: 346 ERLDKAVNNMTQGLLMFDASERLVISNQRYIEMYGLSAD-VVKPGCTFRELIAHRKATGS 404

Query: 459 ---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              ++ +   TIL      +   ++        D     + I   P+++       ++  
Sbjct: 405 FIGDEAEYVATILRDIGRKKSHLIE------TPDG--RSIEIVNEPLADG-----GWLAT 451

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE++K+ + I   A  D LT +PNR  F +RL   L   +     R  +  IDID+
Sbjct: 452 HEDITERRKAEQRITHLAHYDALTELPNRTLFHERLKQELIHVSA--GQRLALHYIDIDE 509

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG  +GD++L S+   +   +     +ARL G+ F ++     N   +     
Sbjct: 510 FKGVNDSLGHLIGDELLKSVAASLSTCVGEAGFVARLGGDEFAVVQTGIRNRGDVEQLIE 569

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +I  P + L  ++T  ASIG A          +++KNA+LAMY AK  G      F
Sbjct: 570 DILAAIRAPRDCLGHQLTADASIGVALIPEHGTELDQIMKNADLAMYAAKGAGRRTWRFF 629

Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R  ++ DL  A+ + +L + Y P + L D+ IVG EAL++W HP  GN+S
Sbjct: 630 EPEMDAQVKARHQLEVDLRQAMVDDQLEVYYQPCVSLQDDRIVGCEALVRWKHPVRGNVS 689

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ IAE+  +I  +   +L     +  +W D      I + +N++        L   
Sbjct: 690 PAEFIPIAEDTGLINQLGERVLHLACAEAATWPD-----DIRLAVNVSPVQFKSGTLALK 744

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   ++ +  SP R++L  +E+V++ + + +   L +LR +G+ + LDDFGT  S LSYL
Sbjct: 745 VAHALATSGLSPHRLELEITEAVLIRD-DDALDTLHQLRALGVRIALDDFGTGYSSLSYL 803

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             IPFD +K +   +     +E   +I+++++ +A   + +  A+ +  E   + L R+G
Sbjct: 804 QRIPFDKIKIDRCFVKDITESEGSASIVQAVVNIAAIRKMSTTAEGVETEAQRQVLKRLG 863

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           C  +Q    + P     +  L K + P  +
Sbjct: 864 CSEMQGYLFSPPKPAADVRSLFKAQRPPSR 893


>gi|149180816|ref|ZP_01859319.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
 gi|148851606|gb|EDL65753.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
          Length = 778

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 162/770 (21%), Positives = 337/770 (43%), Gaps = 26/770 (3%)

Query: 211 MVNRSSMLIPTFAMAWV-----VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265
           +V  + +               V   + I F   +      +   +  R  S   L  S 
Sbjct: 16  LVFGAIIYFSYLYGNMSGIEANVGVLLGIGFLIFNTWAVNTTINTICLREISFFKLIFSS 75

Query: 266 IIFL--FMYLH-WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL-Y 321
           IIF      ++  + W   V +     I        +     + T    R   +   + +
Sbjct: 76  IIFASCISLVNMIDIWSEMVEHDLKMNILLFISANILLAGNVLATIRFIRQIRSLERVGF 135

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW----MAITKRLDNDIIQPALVGGLVL 377
           +        +     ++       +     I L+    + I + +  +     L+  +  
Sbjct: 136 FWILFGSFAIGMAFASIRFTLFSSITLFSTIDLFTNRNIPIFEWVYLNNTLLPLMINIFA 195

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V L     +   + +    + I  +  R           ++  D     +     +  +
Sbjct: 196 LVFLELVPGLFSEIHSKEQQELIIENKRRYETLFDNQAVAIFTLDPKGKILKLNNAVQQL 255

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G     +     ++   IH +  D F + +   V         E ++  ++ ++  + I
Sbjct: 256 TGYPIDQLK-KGSSFAELIHESKEDEFSSYIMEAVKGSSQMF--ETKISTSEGKYIDVQI 312

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            + P+      +     +A DITE  ++ E I   A+ D+LTG+PNR  F+  L   ++ 
Sbjct: 313 TLIPIFVKE-KLANINILAKDITEVIQTREQIQHLAYHDSLTGLPNRFQFVKELQQRIET 371

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S     L   V  +D+D++K INDVLG   GD +L+ L+ R    +K    +AR+ G+ F
Sbjct: 372 SK----LPAAVCFLDLDRFKVINDVLGHQTGDRLLLQLSERFTSFVKEDVKVARMGGDEF 427

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             +     +  ++ +    +   I  P  + ++E+ VT S+G + + +   T  +++K A
Sbjct: 428 TFLFPEIPSMAELENKIEELMALIQTPFQIEKQELFVTGSMGISIYPNDSDTVEDLMKYA 487

Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY +K +G N  E +   +    S ++ +++D+  A++  E  +VY P +++   +I
Sbjct: 488 DVAMYRSKEKGKNTFEFYHQQNDEESSKKLALEKDIRKAMKEKEFEIVYQPQVKVSTGKI 547

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL++W+HP  G I+ ++F+ +AEE  +I  +  ++L    R +  W ++     + 
Sbjct: 548 FGVEALLRWNHPAEGLITPNKFISLAEENGLIHELGEWVLRESCRQVNQWHNE-GYSDLQ 606

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +NI+ K L        ++ +I +  +S S + L  +ES+ M + E ++L+  +LR +G
Sbjct: 607 LSVNISLKQLYHQNFISTVKRVIDEEGFSTSLLDLEITESMAMKDIEYAKLIFNQLRALG 666

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           IS+++DDFGT  S L+++   P D VK +GS +     + +   I+++II M +N+    
Sbjct: 667 ISISIDDFGTGYSSLNHIKNFPIDRVKIDGSFIRDVPGSAEAAIIIKTIIAMTRNLNLLS 726

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           IA+ +  +   + L  + CD IQ  + + PL    + +LL++   +++ +
Sbjct: 727 IAEHVETKEQYEFLQEINCDEIQGYYCSEPLNSFELSELLQQDEKVLQGS 776


>gi|74317287|ref|YP_315027.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056782|gb|AAZ97222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           Receiver modulation [Thiobacillus denitrificans ATCC
           25259]
          Length = 705

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 151/590 (25%), Positives = 272/590 (46%), Gaps = 24/590 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++++L      + + +   R +  +    D++++ D+    ++       +L     S+
Sbjct: 116 RVKYLLRASDALRELHAANARNAALLRAIPDLLFEVDVDGRYLSCHSSRKDLLVAPGESL 175

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   +    +           L           +  F +  A     W  + +   S  
Sbjct: 176 IGRTID--DVLPPEAARICMAALHEANEAGLVTGRQ-FELMLASGA-FWFELSVSRKSAE 231

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    ++ +A +ITE+K + + I   AF D+LT +PNRQSFL+RL   + ++   +  +
Sbjct: 232 PGQKPTFVVLARNITERKAAEQKIYELAFFDSLTHLPNRQSFLERLAQDIRVAQR-EKQK 290

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI------------LARLS 613
             V+ +D+D +K +ND +G   GD +L S   R+   ++  D             LARL 
Sbjct: 291 LAVLFMDLDGFKGVNDTMGHDAGDLILQSAAERLRNSIRPGDSASRLAEDGAQVGLARLG 350

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F  ++    +       A  +R+ +  P  L   E+ +T+SIG A +      ++ +
Sbjct: 351 GDEFTAVIPGITHEEDALRVANRIREQMRTPFVLAGSEVVLTSSIGIAVFPHDGADAATL 410

Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           LK+A+ AMYHAK  G ++ + +    +     R+ ++ +L  A+E  E  LVY P I + 
Sbjct: 411 LKHADTAMYHAKSCGRDNCQFYSAALTQRAQQRLTLENNLRQALERGEFDLVYQPQIDVA 470

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              I  +EALI+W+HP  G I+  +F+ +AEE  +I  I  + L   A D   W+D    
Sbjct: 471 SGRIRSVEALIRWNHPAGGVIAPQDFIPLAEENGLIVPIGEWALRTAATDAARWQDGGR- 529

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++   L   +L   +  ++ +T  +P  ++L  +E  +M   E +   L  L
Sbjct: 530 --VCVAVNLSPVQLRAADLVPTLVDILRETGLAPGLLELEVTEGALMEEREATHATLEAL 587

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNI 909
              G+ L LDDFGT  S L YL  +P   +K + S + G    R   AI+R+I+ +AKN+
Sbjct: 588 LAGGVQLALDDFGTGYSSLGYLKRVPLSNLKIDQSFVHGLPHDRENLAIVRTILALAKNL 647

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                A+ +        L  +GCD +Q  + + PL   +I  LL+ R+ L
Sbjct: 648 GFRTTAEGVETAEQATTLAGIGCDALQGFYFSRPLPAGAIPALLQRRWRL 697


>gi|165869120|ref|ZP_02213780.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167637730|ref|ZP_02396009.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170704854|ref|ZP_02895320.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177649293|ref|ZP_02932295.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190565633|ref|ZP_03018553.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814656|ref|YP_002814665.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229604312|ref|YP_002866848.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254722510|ref|ZP_05184298.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254737552|ref|ZP_05195255.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254751867|ref|ZP_05203904.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254760387|ref|ZP_05212411.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|164715846|gb|EDR21363.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167514279|gb|EDR89646.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170130655|gb|EDS99516.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|172084367|gb|EDT69425.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190563660|gb|EDV17625.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003077|gb|ACP12820.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229268720|gb|ACQ50357.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 828

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 157/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 137 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 195

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 196 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 255

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 256 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 315

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502
           ++ G            D+      L   +G R      + RV+  + +  +     I P+
Sbjct: 316 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 371

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +    
Sbjct: 372 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 430

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ 
Sbjct: 431 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 489

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY
Sbjct: 490 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 548

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EA
Sbjct: 549 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 608

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G IS  EF+ IAEE   I +I  + L+   + +  W        + + IN+
Sbjct: 609 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINL 667

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++
Sbjct: 668 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 727

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ +
Sbjct: 728 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 787

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 788 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822


>gi|51597608|ref|YP_071799.1| hypothetical protein YPTB3308 [Yersinia pseudotuberculosis IP
           32953]
 gi|170022986|ref|YP_001719491.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Yersinia pseudotuberculosis YPIII]
 gi|186896744|ref|YP_001873856.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51590890|emb|CAH22546.1| Conserved putative membrane protein [Yersinia pseudotuberculosis IP
           32953]
 gi|169749520|gb|ACA67038.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Yersinia pseudotuberculosis YPIII]
 gi|186699770|gb|ACC90399.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Yersinia pseudotuberculosis PB1/+]
          Length = 855

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/573 (24%), Positives = 270/573 (47%), Gaps = 15/573 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    I    AT      + +  ER       + D +W+ D        +P    I G 
Sbjct: 284 LVIRRAISEAQATDRSRAALAASEERFRHVAESASDWLWETDAELQVTYLSPRFLIISGW 343

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +     G   +    ++ +       +  + +   R  LQ  +   +A        I  +
Sbjct: 344 SVDHWLGLNLD--SLLNCDITSLRTWLQHTHLTDSRNELQCTY--FSAKGSKRVCRIHAK 399

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+    G+I+ + G A+D+T + ++ + I   +  D LTG+PNR    + L   L   A 
Sbjct: 400 PII-QQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAA 458

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            ++    ++ +++DK+K +ND+ G   GD VL  +  R+   L+  D+++R  G+ F +I
Sbjct: 459 VEHP-LVILNVNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLI 517

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + + ++S +I      +   +  P  + ++EI + ASIG        + + E+L+ A++A
Sbjct: 518 ISNLSSSYEIELLCARVITRLQTPYVINDQEIYLGASIGITLAPQDSMQAEELLRFADIA 577

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M  AK+   N    +           I+ +  L LAV+ SE  L Y P  R  D +++G 
Sbjct: 578 MCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRYRTDDMQLIGA 637

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G +   +F+ +AEE  +I AI+ + L +  +D ++W        + + +
Sbjct: 638 EALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWP-----TSLIVSV 692

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI++ +     L E ++  +  T     R++L  +E +++ + + +  ++  L+ +GI L
Sbjct: 693 NISAIEFRGQCLIERVRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRL 752

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   I  T+IA+
Sbjct: 753 SIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTESHEGQSIVEGIINLGHAISMTVIAE 812

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     +  L  + CD +Q   +A P+   ++
Sbjct: 813 GVETAEQLTYLQSLHCDEVQGYFLAKPMPVEAL 845


>gi|295676981|ref|YP_003605505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1002]
 gi|295436824|gb|ADG15994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1002]
          Length = 771

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/617 (22%), Positives = 272/617 (44%), Gaps = 20/617 (3%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
              +    A+  R             L  I   +G  V Q  +A     Q +    ER  
Sbjct: 151 AGIVLGAFAVYYRATRRPTPEE-EAMLRDIGSSVGLAVHQDAMA-----QRLAHSEERHR 204

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFR 465
           L V    + +         +   P    +L +    +   ++  +      D     +  
Sbjct: 205 LVVDHLSEGIVVQSRTGIVLACNPSAQRMLHVTPQVVGRSMQTVMTRAFGEDGSVIGDGN 264

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524
             +       +  L     +     +  W+   + P+    + +    +   +DI   ++
Sbjct: 265 RPVTQVFATGKPMLGVTIGLELMSGEVVWITENVVPILRPGDSEPDSVLISFSDIGPVRE 324

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN----LRPTVMVIDIDKYKKIN 580
           +   +   A +D+LTG+ NR    +R+  +    A+ D+        V+ +D+D +KK+N
Sbjct: 325 AQRQLKYLATRDSLTGLYNRAYLTERMRDLFAPRASGDHGGELASVAVLFVDLDGFKKVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L S+  R+   +   D LAR+ G+ F I+  +  N+ ++   A  +   
Sbjct: 385 DTAGHEAGDTLLCSVAERLSACVGRSDTLARVGGDEFVIVASAYGNTGQLIALAHRVLDL 444

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA+P  +   E  + ASIG + +       + +++NA+ AMYHAK RG N+ + F     
Sbjct: 445 IAVPFAVAGNEYYLGASIGISLFPEDGQDVATLMRNADSAMYHAKQRGRNNFQFFTAELN 504

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  +    I++ L  A+  +EL LVY PI+       +G EAL++W + + GN+S  EF+
Sbjct: 505 QHLQRRFTIEQSLRRALAANELSLVYQPIVDSQSARTIGAEALLRWYNSELGNVSPGEFI 564

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I  ++L+   + +  WR     P + + +N++ +   D  L E ++  +
Sbjct: 565 PVAEDAGLIVEIGDWVLDHACQQVAQWRRTLA-PHLIVAVNLSPRQFND-GLLERIERCL 622

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++   P+ ++L  +E ++M + +    +L  L  +G+ +++DDFGT  S LSYL   P 
Sbjct: 623 AQSGLEPAALELEITERLLMSDSDTVLPMLCALSAMGVRVSVDDFGTGYSSLSYLKRFPL 682

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G       IAI ++++ MA ++   + A+ +        L  + CD  Q
Sbjct: 683 HNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQAAFLRAIDCDKQQ 742

Query: 937 DSHVASPLGFNSILKLL 953
               + P+G ++  + L
Sbjct: 743 GYLYSRPVGASAYARTL 759


>gi|119897241|ref|YP_932454.1| GGEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119669654|emb|CAL93567.1| GGEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 610

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 130/559 (23%), Positives = 253/559 (45%), Gaps = 13/559 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNF 464
           R       +   ++        +     +A + G     ++   + +    +++  R   
Sbjct: 44  RFRSIFDNAVLGMYQTTEDGHYLAANQALADLYGYPTPAALMAGLSDIAGRLYVE-RGR- 101

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R    + +  R   + +E  V   D +  W+      +  ++G  L Y G   DI+E+++
Sbjct: 102 RDDFKALIRARARVVDFESEVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERRR 161

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   A  D +TG+PNR    DRL   +  +   D  R  V  ID+D +K +ND +G
Sbjct: 162 HRTLLEHQATHDPVTGLPNRYLLQDRLDRAMGAARRRDE-RLMVAFIDLDNFKFVNDSMG 220

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AVGD +LV + RR+   ++  D LAR  G+ F +I+ S             +  ++  P
Sbjct: 221 HAVGDRLLVEMARRLQACVRETDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQP 280

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
           + L  R+++V  S+G A +         +L++A+ AMY AK  G      +    ++   
Sbjct: 281 LALEGRDLSVGCSMGVAVYPRDGADLETLLRHADAAMYQAKAAGKGQFRFYEAGLNAAVQ 340

Query: 703 DRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +R+ ++  L   +EN   E  + Y P       ++ G EAL +W   + G ++   F+ +
Sbjct: 341 ERLALESALRRTLENDSDEFQVAYQPKFD-ASGDVCGCEALARWHSTESGTVAPDRFIPL 399

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALIS 819
           AEE  +I  +   +L     + + W  Q    P  + +NI+++    D +L   ++A + 
Sbjct: 400 AEETGLIVLLTARVLHAACAEAVRWSGQGGAAPG-VAVNISARHFRRDGQLAALVRAALE 458

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P R++L  +ES+ +GN E +  +LG L+ +G+++ +DDFGT  S L+YL   P D
Sbjct: 459 QSGLPPGRLQLELTESLFVGNVEETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVD 518

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +   +I  +++ + +++   ++A+ +        L   GCD +Q 
Sbjct: 519 VLKIDRSFVGECDRADDARSITGAVLSLGRSLGLRVVAEGVERPAQAAYLLAHGCDELQG 578

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+   ++   L   
Sbjct: 579 YLYAQPMPAAALRDFLASY 597


>gi|22127265|ref|NP_670688.1| hypothetical protein y3389 [Yersinia pestis KIM 10]
 gi|45443155|ref|NP_994694.1| hypothetical protein YP_3410 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809345|ref|YP_653261.1| hypothetical protein YPA_3354 [Yersinia pestis Antiqua]
 gi|108813394|ref|YP_649161.1| membrane protein [Yersinia pestis Nepal516]
 gi|149366998|ref|ZP_01889031.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|167466562|ref|ZP_02331266.1| Conserved putative membrane protein [Yersinia pestis FV-1]
 gi|218928168|ref|YP_002346043.1| hypothetical protein YPO0998 [Yersinia pestis CO92]
 gi|229836724|ref|ZP_04456889.1| Conserved putative membrane protein [Yersinia pestis Pestoides A]
 gi|229840925|ref|ZP_04461084.1| Conserved putative membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842515|ref|ZP_04462670.1| Conserved putative membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903868|ref|ZP_04518981.1| Conserved putative membrane protein [Yersinia pestis Nepal516]
 gi|270487607|ref|ZP_06204681.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294502814|ref|YP_003566876.1| hypothetical protein YPZ3_0704 [Yersinia pestis Z176003]
 gi|21960338|gb|AAM86939.1|AE013940_5 hypothetical [Yersinia pestis KIM 10]
 gi|45438023|gb|AAS63571.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108777042|gb|ABG19561.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Yersinia
           pestis Nepal516]
 gi|108781258|gb|ABG15316.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Yersinia
           pestis Antiqua]
 gi|115346779|emb|CAL19664.1| putative membrane protein [Yersinia pestis CO92]
 gi|149290612|gb|EDM40688.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|229679638|gb|EEO75741.1| Conserved putative membrane protein [Yersinia pestis Nepal516]
 gi|229690825|gb|EEO82879.1| Conserved putative membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697291|gb|EEO87338.1| Conserved putative membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705667|gb|EEO91676.1| Conserved putative membrane protein [Yersinia pestis Pestoides A]
 gi|262360883|gb|ACY57604.1| hypothetical protein YPD4_0695 [Yersinia pestis D106004]
 gi|262364828|gb|ACY61385.1| hypothetical protein YPD8_0695 [Yersinia pestis D182038]
 gi|270336111|gb|EFA46888.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294353273|gb|ADE63614.1| hypothetical protein YPZ3_0704 [Yersinia pestis Z176003]
 gi|320013693|gb|ADV97264.1| Conserved putative membrane protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 788

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/573 (24%), Positives = 270/573 (47%), Gaps = 15/573 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    I    AT      + +  ER       + D +W+ D        +P    I G 
Sbjct: 217 LVIRRAISEAQATDRSRAALAASEERFRHVAESASDWLWETDAELQVTYLSPRFLIISGW 276

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +     G   +    ++ +       +  + +   R  LQ  +   +A        I  +
Sbjct: 277 SVDHWLGLNLD--SLLNCDITSLRTWLQHTHLTDSRNELQCTY--FSAKGSKRVCRIHAK 332

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+    G+I+ + G A+D+T + ++ + I   +  D LTG+PNR    + L   L   A 
Sbjct: 333 PII-QQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAA 391

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            ++    ++ +++DK+K +ND+ G   GD VL  +  R+   L+  D+++R  G+ F +I
Sbjct: 392 VEHP-LVILNVNLDKFKPVNDIFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFVLI 450

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + + ++S +I      +   +  P  + ++EI + ASIG        + + E+L+ A++A
Sbjct: 451 ISNLSSSYEIELLCARVITRLQTPYVINDQEIYLGASIGITLAPQDSMQAEELLRFADIA 510

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M  AK+   N    +           I+ +  L LAV+ SE  L Y P  R  D +++G 
Sbjct: 511 MCEAKNSPRNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRYRTDDMQLIGA 570

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G +   +F+ +AEE  +I AI+ + L +  +D ++W        + + +
Sbjct: 571 EALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWP-----TSLIVSV 625

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI++ +     L E ++  +  T     R++L  +E +++ + + +  ++  L+ +GI L
Sbjct: 626 NISAIEFRGQCLIERVRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRL 685

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   I  T+IA+
Sbjct: 686 SIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTESHEGQSIVEGIINLGHAISMTVIAE 745

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     +  L  + CD +Q   +A P+   ++
Sbjct: 746 GVETAEQLTYLQSLHCDEVQGYFLAKPMPVEAL 778


>gi|91792889|ref|YP_562540.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714891|gb|ABE54817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1450

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/561 (24%), Positives = 269/561 (47%), Gaps = 19/561 (3%)

Query: 400  IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            I    E+  L   A+    + ++  D     +       ++L     S  G + ++   +
Sbjct: 892  IKQTEEQLRLFARAIENISEGMFILDAEHRFLEVNSACCSLLQRTKSSFTGELLSF--NL 949

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +     +F T + S +  + G    +     +D+    M + I  + +  G    Y+GI 
Sbjct: 950  YPE---SFSTQIRSIITQQ-GYWSGDVDALKSDDSTFLMSLTIDAIKDELGLFSHYVGIF 1005

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DIT +K+  E +      D LTG+ NR S    L+ ++       ++  T+MV+D+D +
Sbjct: 1006 SDITRRKQQEEELRKLTNNDILTGLANRSSLQVTLSNLVKK-----DIHHTLMVLDLDNF 1060

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K+IND LG  +GD +++S+  RI  ++     L RL G+ F I+L    +    A  A +
Sbjct: 1061 KRINDSLGHQIGDSLIISVAERIQAIIPSHASLYRLGGDEFAILLDKNPDIASSAAIAGS 1120

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            + K +  P ++   ++ +  SIG   +   +     +L+ A++AMYHAK  GGN  + + 
Sbjct: 1121 VIKDLKTPFSIESEQLVIGISIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYA 1180

Query: 697  VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             S  ++    ++ +  +   ++     + Y   + L  + I G+EAL++ +HP+ G I  
Sbjct: 1181 ESLNQNVLRQLEVENLIRQGLKEDLFEVHYQAKVDLKLDRITGMEALVRLNHPQLGLIPP 1240

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            ++F+ +AE+  +I  I   +L +      SWR Q       I +N++SK     +L + +
Sbjct: 1241 NDFIPLAEDNGLIIEIGDIVLRKACTAAQSWRQQGIFNG-RIAVNLSSKQFALPDLVQRI 1299

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++++ +T      ++L  +E  V+ NPE +  ++ +L K+GISL LDDFGT  S LSYL 
Sbjct: 1300 ESILCQTGLPAENLELEITEGTVIKNPESAIKVMQQLAKMGISLALDDFGTGYSSLSYLK 1359

Query: 875  YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P   +K + S +    +  +   ++ SII +A N+  T++ + +     +  L  + C
Sbjct: 1360 RFPIHRLKVDKSFVDDIDKSDMDLKMVDSIITIAHNMGLTVVGEGVEQAAQLSILKALNC 1419

Query: 933  DYIQDSHVASPLGFNSILKLL 953
            + IQ    + P+  +   +LL
Sbjct: 1420 EEIQGYIFSKPIKESEFTQLL 1440



 Score =  121 bits (304), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 2/160 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            L+ +L    +++ ++      + I    ER  L++ GSGD +WDWDI   ++  +    
Sbjct: 746 ALLTLLFSSALVRAIMRRRVIQKQIALSEERLKLSLWGSGDEMWDWDIESGKIYRSNIWG 805

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           T L            +    IH  D+   +  LD          +  +RV+  +N++ W+
Sbjct: 806 T-LEFPQDGQRSGDVDGESNIHPQDQARVQQALDDHFEGETDHFEVAYRVKNRNNEWLWI 864

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           + R + +  ++    LR  G   DI   K++ E +   A 
Sbjct: 865 LDRAKIVERDNKERPLRMTGTIKDINNIKQTEEQLRLFAR 904


>gi|268679208|ref|YP_003303639.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617239|gb|ACZ11604.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 586

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 143/587 (24%), Positives = 265/587 (45%), Gaps = 23/587 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435
           L   +IG        +     Q    + ER    +  + ++++  D      +     + 
Sbjct: 9   LRTKIIGLGESSVRKSYYPQLQDRIMELERFHALLDRARELIFLVDAQNLHIIDVNAIVC 68

Query: 436 TILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           + L  +  S+    I  WLP+            +          +  E  +  +      
Sbjct: 69  STLEASKESLVHSEITQWLPH-------ELIERMQRLAQGVEDSIMVEMGIENS-GGVVP 120

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +         S G+   ++ +  DI+E++ +   I   AF D LT + NRQ   DR+   
Sbjct: 121 LEF--VLQYLSFGEDDYFVILGKDISERRHAESTIHTLAFFDPLTHLANRQLLHDRMAQA 178

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  S     +   +++ID+D +K +ND  G  +GD++L+ + +RI  +++  D LAR+SG
Sbjct: 179 LAKSQRHHKV-GALLMIDLDNFKALNDTKGHHIGDELLIQVAQRIQTIVREGDTLARISG 237

Query: 615 NRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           + F ++L    +       +   FA  ++  +  P  LL  E T ++SIG A +     +
Sbjct: 238 DEFVVLLEGLAHEESKAAQEAEKFATRVKYLLNEPYELLGYEHTCSSSIGIALFNGQPKS 297

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPI 727
              +LK A++AMY AK +G N +  +      +      ++ +L +A+   EL L Y P 
Sbjct: 298 KETLLKQADIAMYQAKEKGRNRICFYDPLMQENIEHKTTMEHELRMALSKEELILFYQPQ 357

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L   +IVG+EAL++W+HP+ G I  + F+ +AEE  +I  +  ++L R  + +  W+ 
Sbjct: 358 VNLE-GKIVGVEALLRWNHPQKGLIPPNTFIPLAEETGLIIPVGSWVLHRACQQLSEWKK 416

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P+ + IN+++K   +    E +   I+ +      IKL  +ES+++ +   +   
Sbjct: 417 DFPHQPLHLSINVSAKQFQEASFYETVANAIALSGSDAGSIKLELTESLILDSIHETIAK 476

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           +  LR +G+  +LDDFGT  S LSYL  +P D +K + S +           I+++II M
Sbjct: 477 IEALRLLGVGFSLDDFGTGYSSLSYLKRLPLDELKIDQSFVRDIGHDNNDAMIVKTIIEM 536

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           A N +  +IA+ +  +     L   GC   Q      P+    + +L
Sbjct: 537 AHNFDLDVIAEGVEDKEQFNFLMENGCGLFQGYLFGKPMPPEELERL 583


>gi|218903664|ref|YP_002451498.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|218535542|gb|ACK87940.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 828

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 160/755 (21%), Positives = 309/755 (40%), Gaps = 22/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 137 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 195

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 196 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 255

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 256 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 315

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502
           ++ G            D+      L   +G R      + RV+  + +  +     I P+
Sbjct: 316 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 371

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +    
Sbjct: 372 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 430

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ 
Sbjct: 431 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 489

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY
Sbjct: 490 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 548

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EA
Sbjct: 549 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 608

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W D A    + + IN+
Sbjct: 609 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEW-DSAGYSNLKMGINL 667

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++
Sbjct: 668 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 727

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ +
Sbjct: 728 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 787

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 788 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822


>gi|119493187|ref|ZP_01624062.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensors [Lyngbya sp. PCC 8106]
 gi|119452752|gb|EAW33929.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL domains)
            with PAS/PAC sensors [Lyngbya sp. PCC 8106]
          Length = 1090

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 147/536 (27%), Positives = 259/536 (48%), Gaps = 8/536 (1%)

Query: 425  RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                        + GL++  + G              + F     + +   +     E R
Sbjct: 544  GRFRLWNKACEQLFGLSAVEVLGK--TVYDVFPPEQAEFFHQQDQAVLSAGKVLDIPEER 601

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            V         +     P+ N   D    + I  DIT++K++ + +  +AF D LT +PNR
Sbjct: 602  VETQTLGQRILHTVKVPLLNHYPDTEYLLCIGEDITKRKQAEDQLRHHAFYDTLTNLPNR 661

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
              FL+RL   +            V+ +D+D +K++ND LG  +GD +L+++ RR+   L+
Sbjct: 662  ALFLNRLAHSIKQVQQTSGELFAVLFLDLDNFKRVNDSLGHQIGDQLLIAIARRLEGCLR 721

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS-W 663
              D LARL G+ F I+L   NN       A  + + + +P NL   E+    SIG A   
Sbjct: 722  SRDTLARLGGDEFTILLEQINNITDAIKVARHLHQQLMLPFNLSGNEVFTNVSIGIALSC 781

Query: 664  TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721
            +  +    E+L+NA+ AMY AK  G      F     R   +R+ ++  L  A+E +E  
Sbjct: 782  SRHEQHPEELLQNADSAMYRAKEMGKGAYAVFDTRMHRQAVERLQLESQLRRALELNEFQ 841

Query: 722  LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
            + Y PI+ +   E++G EALI+W +P  G IS + F+ +AEE+ +I  I  ++L +    
Sbjct: 842  VYYQPIVSITTGEVIGFEALIRWLNPYKGFISPALFIPVAEEIGLISKIGQWVLYQACEQ 901

Query: 782  IISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +  WR Q  +   + + +N++S+ L + +L E +  +++ T      +KL  +ES+++ N
Sbjct: 902  LQVWRKQFPLFKNLTVSVNLSSQQLREPDLLEQIDQVLATTGLPSHCLKLEITESLLIEN 961

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
             +++  +L +++   I L+LDDFGT  S LSYL   P +T+K + S +       +  AI
Sbjct: 962  YDQALKILRQIQDRNIQLSLDDFGTGYSSLSYLHRFPINTLKIDRSFVKRLKQNHENTAI 1021

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +++I+ +A  +    IA+ I     +++L  +GC+Y Q    +  L    I  LL 
Sbjct: 1022 IKAILRLANALAMNTIAEGIETVFQLEKLKGLGCEYGQGHLFSKALDAQDITHLLS 1077



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 6/154 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRD--RVTTTPDIATI 437
           +     I +++AT    Q           A+  S + +   D    D   +        I
Sbjct: 367 IHFIQAIANIIATAVARQQSTESLYLMERAINASSNGIIITDATETDHPIIYVNAGFERI 426

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G +   +      +L      D      +  + +  R  R+    +    D +  W  +
Sbjct: 427 TGYSKEEVIEQNCRFLQG-PQTDSSLVERLRTALLQGRECRVV--IQNYRKDGRLFWNDL 483

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +I P+ N  G +  +IG+ NDITE+ ++ E +  
Sbjct: 484 QIAPVFNDRGHLTHFIGVQNDITERYEAQEEVRQ 517



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 60/231 (25%), Gaps = 34/231 (14%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMA------ITKRLDNDIIQPALVGGLVLIVIL 381
           Y          +L  AW+ + +    L         +  +          + GL   + +
Sbjct: 10  YFPRNSLNTKTILGQAWLTMVVGSGILGTTLILRQSVFIQDPITQTVQLSLTGLTFALGI 69

Query: 382 IGFTVIQHVLATGYFSQGI--------------FSDGERQSLAVLGSGDIVWDWDIVRDR 427
           +   +    ++    +  +                + +R       S D++         
Sbjct: 70  LLGAIATRFISQLQVNAELETHSQIDPPQCQPFIQERDRF---FSLSLDLLCIASFEGYF 126

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                     LG     +         ++H +D+   +  L      +     +E R R 
Sbjct: 127 QRVNAAFVNTLGYTEAELLSVP--LWEFVHPDDQAATKAELAEIAQGK-PSFNFENRYRC 183

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK----KSLEGILCNAF 534
            D  + W+     P             +A D+TE K    +    I   A 
Sbjct: 184 RDGDYRWLSWTSAPFVQEG----LLYAVARDVTEYKHSVAQLQSRIEQQAT 230


>gi|75759399|ref|ZP_00739494.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228899313|ref|ZP_04063576.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228963723|ref|ZP_04124865.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|74493111|gb|EAO56232.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228795959|gb|EEM43425.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228860344|gb|EEN04741.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 569

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 253/566 (44%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      LA+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKLALDESS-IVAITDRKGLITYVNDKFCEISKYKREELIGKDHRILNSGHHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +    +  +      E R RA D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KTFFQNLWKRILNGK--VWTGEIRNRAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++              A+ D LT +PNR   +  +  ++            ++  D+
Sbjct: 129 SRKEAEHRLRLSESRYRELAYHDALTSLPNRLQLITTVNKLIADKKE-----FGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L   +    ++  
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKNHRQDDMSQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+    +    +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGLDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  +   G+EAL++      G 
Sbjct: 303 FFTDELRAKINRRMKVEFALQKAIRDEELDVALQPIIDLKTKRYSGIEALVRCMTED-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I+ SEF+ +AEE  +I  +  ++LE+  R   +         + + +N++ + L+     
Sbjct: 362 IAPSEFIPVAEESGLIIKLGDWVLEKSCRLFKTLP--NYQEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  LR +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILKRTGFPPNRLILEITESIAVRHFDYIIATLQELRNMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             M CDY+Q  + A PL    + + L
Sbjct: 540 QSMSCDYVQGFYYAKPLSVGELKEKL 565


>gi|46201059|ref|ZP_00055836.2| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 1034

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 131/579 (22%), Positives = 255/579 (44%), Gaps = 15/579 (2%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            +         + + +   R    +    D +   D     +     +  I G +   + G
Sbjct: 449  RDTTEVTAAMRAVAAREHRIRAIMDTVLDGIVTIDEDGTILNANLSVERIFGHSLSELIG 508

Query: 448  PIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                 +  +         D +     S        +  E   +  D     + + I  + 
Sbjct: 509  AN---VSILMPEPDAGHHDGYIKNYLSTGIGAIIGIGREVMGKRKDGSLFPVHLSISELR 565

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                 +  + G   D+TE K+  + +   A  D LT +PNR    DRL   + ++     
Sbjct: 566  VEKRRL--FTGTIRDLTENKQLAQRVAYLANHDPLTDLPNRSLLTDRLGQAVAMA-RSAG 622

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            L   ++ +D+D +  IND +G  VG+ +L    RR+ + +      ARL+G+ F +++  
Sbjct: 623  LLVAIITVDLDGFTTINDSMGHDVGNSLLRETARRLAQAVGAGGTAARLAGDEFAVVVPQ 682

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   +I      +   +  P  +   E+ V   +G + +      + E+L+NAE+A+++
Sbjct: 683  TSEMAEITAQVTQIHDILNKPYTIHGTEMVVPVDMGVSVFPRDGDDAQELLRNAEMALHN 742

Query: 684  AKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             K R           +S   ++R+ ++  +  A+ + +  L Y P +RL D  ++G EAL
Sbjct: 743  VKRRTDLRMGFFDAAMSFAVTERMTLERSVKDALRSGQFELFYQPQVRLSDYALIGAEAL 802

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            I+W HP+ G I+  +F+ +AEE  +I  +  ++L +    +  W D   +  + + +NI+
Sbjct: 803  IRWRHPELGIITPDKFIPVAEETGLIVPLGTWVLHQACDQLRRWND-LGLTGLRLGVNIS 861

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             +   + +L + +   I+++  SP  + L  +ES++M + E +  LL  L K+G++L++D
Sbjct: 862  GRQFREADLADIVADCIAESGVSPGDLDLELTESMLMTDGEGTLKLLRSLAKLGVTLSID 921

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S L+YL   P DTVK + + +      E    ++ +II +A ++    IA+ + 
Sbjct: 922  DFGTGYSSLAYLKRFPVDTVKIDRAFVRDLDQDEDGRVLVNAIISLAHSLSLKTIAEGVE 981

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             E     L R GCD IQ   +  P+      +  K   P
Sbjct: 982  TESQASLLARHGCDEIQGYMIGRPMPVADFAEFAKSYCP 1020



 Score = 44.6 bits (104), Expect = 0.093,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 8/148 (5%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             + +   VI+H +        + +        +  S DI    D     +T   +    
Sbjct: 113 AGLTLLPRVIRHAIERQEGQAALEASHRTSQALLDASHDIAMLLDAEGHILTLNTEAEQY 172

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           L     ++ G   +    + +   ++ R+ L   +   R       +    D   HW   
Sbjct: 173 LNAPPDAVIGQ--SIFDLLPLTLAEHRRSFLAEALESGRT-----VQFEDTDG-IHWFAN 224

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS 525
           R+  ++       R+   + DIT ++ +
Sbjct: 225 RLLAVAGVEAGEHRFAIFSRDITGERAN 252


>gi|209515164|ref|ZP_03264032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
 gi|209504418|gb|EEA04406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
          Length = 789

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 125/526 (23%), Positives = 240/526 (45%), Gaps = 12/526 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  + ++ GL    +      WL  +   D +     ++          + E+R+R +
Sbjct: 262 HVSAGVESVFGLTPQELSRKPSAWLDLVVPEDLEPVLAEMNRVASEGTEG-RVEYRIRRS 320

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D    W+     P+ +    + R +G+  DIT +++ L  +   A+ D LTG+ +R + +
Sbjct: 321 DGCLRWIRSTAYPVRDGCAKVTRIVGVGEDITLEQERLAALDRLAYTDGLTGLASRGALV 380

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            R+ ++        N+   +M +D+D++K +ND LG    D +L  + + I   L     
Sbjct: 381 RRMKSLC-----RQNVAFGLMFVDLDRFKVLNDTLGHTAADRLLKDIAKVIQGALPPDAC 435

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F +I+  EN+   +A  A ++    +  +        VTASIG + +     
Sbjct: 436 VARLGGDEFAVIV--ENDKATLATMAQSLLNRFSNDVRKDHAAPFVTASIGISIFPEHGR 493

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
               +L +A++AMY AK  G N      + SS       ++ DL  A+ +++  L +  I
Sbjct: 494 DHEALLTSADIAMYAAKRGGRNAFRFADKASSALLGDFELERDLPTALASNQFVLHFQGI 553

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  + G+EAL++W+HP  G ++   F+ I EE   I  +  ++++     +  W+ 
Sbjct: 554 HEPASLAVKGVEALVRWNHPARGLVAPGSFIPILEESGFIVEVGTWIIDAALAQLAIWQT 613

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +N++++ L D+ L   +   + K   SP R+++  +ES +M N   ++  
Sbjct: 614 AGGK-KLSMSVNVSARQLRDDSLVAIVNEALRKHQVSPGRLEIELTESALMENSSLAQAT 672

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905
           L  L+++G+ + +DDFGT  S L YL     D VK + S          A  I+R II M
Sbjct: 673 LMALKRLGVRIAIDDFGTGYSSLRYLADFSPDIVKIDRSFTARLGRDAAATSIVRGIIQM 732

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  +   + A+ +     +  L   GCDY+Q   +  P     ++ 
Sbjct: 733 SHELGIKVTAEGVETNQQLHALREAGCDYVQGFFLTMPTDAEKLVH 778



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 18/215 (8%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN---DIIQPALVGGLVLIVILI 382
            + + +  Y R   +     LI I       ++  +  +    I++ AL     + V+ +
Sbjct: 35  FLAYFLSRYGRRRTIPLTSFLIAIAAGVGIASLVHQAASEAAMILRLALSMAAGIAVLAV 94

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-A 441
               +    A    +  + S        +  + D +         +  +   A ++   +
Sbjct: 95  VHRKLGADHARQSAATALASGL------LHANRDCLKMLATDGKMLRVSEHGAMLMEAES 148

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G   +WL +   +DR    T L   +                  +  W    + P
Sbjct: 149 PEQLSGV--DWLAFWTGDDRTAAETALAGALSGASTSFTGSC--ATTKGRTKWWNSTLTP 204

Query: 502 MSNSNGDILRYIGIANDITEQ----KKSLEGILCN 532
           ++  +G +   +  + D+T+Q    K   E     
Sbjct: 205 VTGEDGAVSALLCASEDVTQQCELLKTLRERNQLM 239


>gi|167035254|ref|YP_001670485.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166861742|gb|ABZ00150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 861

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 150/621 (24%), Positives = 282/621 (45%), Gaps = 15/621 (2%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
              +W         LW  +   L   +I   ++  L    +     V   +L     +Q 
Sbjct: 242 YHLSWSSPLPGHQLLWAVLPALLSVLLILGLVMLYLCRHALRSSRAVGLTLLHLQQSNQA 301

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +  +R       + D +W+ D  +     +   A + G       G   N L      
Sbjct: 302 LEASEQRFRAVAESASDWIWETDRQQRLTYLSQRFANVTGYPVDDWLGHPLNQLLACDTT 361

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               +  +L +    +   L+  +R    + Q  +  I  R +   +G  L + G A+DI
Sbjct: 362 PLSPWLDVLTTADPQQLANLRCTYR--DPNGQNRYCRISARAIW-HDGKALGFRGTASDI 418

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T++  +   I   +  D LTG+ NR      L   L        L     ++D+D +K I
Sbjct: 419 TDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGNDSPPLTLL--LLDLDNFKPI 476

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A GD VL  +  R+ +  +  D++ARL G+ F ++L   +N  +I  F   +  
Sbjct: 477 NDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLGGMDNRSEIDRFCARLIG 536

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
            +  PI    +++ + ASIG A   +    + E+++ A++A+Y AK  G N    F   +
Sbjct: 537 LLQQPIIFDGQQLHIGASIGVAQTRTQGFDAGELIRCADIALYQAKADGKNTWRYFAAEM 596

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     R  ++ DL  A+ N E  L Y P  RL D  IVG+EAL++W HP+ G +    F
Sbjct: 597 NQQIQYRRQLENDLRRALRNQEFVLHYQPRYRLGDLRIVGVEALLRWQHPQEGLLGPDTF 656

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I A+  ++L    R    W +      + + +N++    L +++   ++ +
Sbjct: 657 IPLAEQSDIIVALGRWVLREACRTAHDWPN-----DVLVSVNLSPAQFLRSDVVADVREI 711

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T +   R++L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL   P
Sbjct: 712 LLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLRTYP 771

Query: 878 FDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           FD++K +   ++G         A++++II + + +  T+ A+ +  E  +K L +  C  
Sbjct: 772 FDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEQQLKALEKDRCHE 831

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q  +++ PL    +  LL++
Sbjct: 832 VQGYYMSRPLDSAGLQALLQQ 852


>gi|91776819|ref|YP_546575.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
 gi|91710806|gb|ABE50734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacillus flagellatus KT]
          Length = 747

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 159/783 (20%), Positives = 311/783 (39%), Gaps = 57/783 (7%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS-----KLVNL 245
             G+ +G+     + + I Y     ++     A+ +  L         L          +
Sbjct: 1   MLGVAVGMLVSAVVNVAILYQAQLVTLQHVLPALLFAWLVNALGVLLLLPLLLNITWAEI 60

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
            S      R      L+ ++   +F  +          Y          +L  +      
Sbjct: 61  RSFWQRRARFSLLALLAVTVEWAIFQLVP--------DYADQYMWFAFLVLPLVVLISMR 112

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
           +  +   + + ++ +            G + A    P W L   W +   ++I   L   
Sbjct: 113 MGITGVSMVVLALSIVALMSAQVDYQAGLDHA-GYQPVWAL---WVLMATLSIVGMLIAA 168

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           +                         +     + +     +    +  + D +   D   
Sbjct: 169 LQS-----------------------SREVTERALRHSETKFRAVIENAQDGIVSIDEDG 205

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYE 482
             V        + G     + G +   +  I ++ RD  R   + ++     ++   + E
Sbjct: 206 RLVEFNHAAEVMFGYRREDVLGKMLVDI-LIPLSLRDAHRRGHERYLASGVSKMLDRRLE 264

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                AD     + + I  +    G  L   G   D+TE++K    I   AF D LT +P
Sbjct: 265 LSALRADGTEFPVEVTITSLK-EQGLPL-LTGFFRDLTERRKVESEIRNLAFYDALTTLP 322

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR+  LDRL   +  S         V+ ID+D +K +ND  G  +GD +LV + RR+ + 
Sbjct: 323 NRRLLLDRLQQAIAASVRHGR-HGAVLFIDLDNFKALNDSRGHDIGDLLLVEVARRLRQC 381

Query: 603 LKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++  D +ARL G+ F I+L       E    +    A  + + I  P  L E E   ++S
Sbjct: 382 VRNEDTVARLGGDEFVIVLEDLSLNLEQAIAQTRQVAQKVLEIINHPYQLGEIEHHNSSS 441

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG   +  + ++  E+LK ++ AMY AK  G N +  F  +   +      ++  L LA+
Sbjct: 442 IGIVLFNGNFVSMEELLKRSDTAMYEAKAAGRNTLRFFDPAMQAALERRVDMELQLRLAI 501

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              +L L     +     ++ G E L++W HP  G ++  EF+ IAE+  +I +I  ++L
Sbjct: 502 VQKQLRLFCQVQVDAE-RKVFGAEILLRWQHPDHGLLAPKEFVGIAEDSGLIVSIGHWVL 560

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                 +  W  +     + + +N++++     +  + ++ ++  T   PS +KL  +ES
Sbjct: 561 YNACLQLKDWEARPGFDSLQLAVNVSARQFRHADFVDEVRKILQSTGADPSLLKLELTES 620

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
           VV+ N   +   +  LR++G+  ++DDFGT  S L+YL  +P   VK + S +    E  
Sbjct: 621 VVLDNIADAVAKMNALRELGVRFSMDDFGTGYSSLAYLKRLPLSQVKIDRSFVREIAEDA 680

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              A++++I+ M+  +   +IA+ +  E+  + L   GC + Q    A P+      +++
Sbjct: 681 SDAAMVQAILAMSNTLGLKVIAEGVETEVQFELLQSYGCRFFQGYLFAKPMLIQDFEQMV 740

Query: 954 KER 956
           +++
Sbjct: 741 QDK 743


>gi|120611288|ref|YP_970966.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120589752|gb|ABM33192.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 743

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 136/576 (23%), Positives = 241/576 (41%), Gaps = 50/576 (8%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                        +LG A G +           H +D D                   E 
Sbjct: 169 NNRLTRCNRHFEQMLGYAPGELSEGSARQR---HFSDADWEAMECHGHGEPNGTGFTGEM 225

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE---------------------- 521
            + A D       +R +P+ +        I IA D++E                      
Sbjct: 226 ELLAKDGSTVACEVRSQPL-DPLFPEQGCICIAMDVSEQRKTQAELARMHAELEQQVQER 284

Query: 522 -----------------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                            +K   E I   A  D LTG+PNR    +R    + ++  +   
Sbjct: 285 TRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVAQEN-GT 343

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+ +D+D +K +ND LG  VGD +LV + +R+  +++  D ++RL G+ F ++L   
Sbjct: 344 PLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVSRLGGDEFILLLPG- 402

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            N+   A  A  ++++   P  +   E+T+  S+G A +         + ++A++AMY A
Sbjct: 403 ANAHGAARVATKLQEASRQPYQIGHHELTMAPSMGIALFPDDGCDFDTLTQSADVAMYRA 462

Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F           +  +  L  A+E  +L+L Y P I +   EI  +EAL+
Sbjct: 463 KLDGRNTYRFFTPEMQAQSVRALLLENALRRALEREQLHLHYQPQITIASGEIRSVEALL 522

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +WDHP+ G IS +EF+ IAE+   I  I  ++L      + +W        + + +N+++
Sbjct: 523 RWDHPELGPISPAEFIPIAEDSGQILQIGEWVLRTALAQLQAWHAMGL-EWLSMAVNLSA 581

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                  L E +  ++ +T   P R++L  +E V + +P  +   + +L   G+ +++DD
Sbjct: 582 LQFRQPLLPELVSRILEETRLHPQRLELELTEGVAVDDPRSAIATMDQLHARGVRMSMDD 641

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS L       +K + S +          AI+ +II MA+ +     A+ +  
Sbjct: 642 FGTGYSSLSQLKRFQIYKLKIDQSFVRDLGVDSNDRAIVSAIIRMAQALGMRTTAEGVET 701

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ L + GCD  Q  + + P    +I  LL++R
Sbjct: 702 AEQLEYLRQQGCDEAQGYYFSRPQTAQAITPLLQQR 737



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/411 (13%), Positives = 114/411 (27%), Gaps = 52/411 (12%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457
            +      Q   +  +G  +      R  V   P  A I G  ++    G        ++
Sbjct: 19  AVERLLREQQTLLDSAGVGIVFI-RQRQVVRCNPRYAEIFGYASTREAIGLSS---QSLY 74

Query: 458 IND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +    R   R    +         + E ++R  + +  W  +  R + N        I 
Sbjct: 75  PDSAAFRALGRAAYPTLSLGL--PYRCECQMRRKNGRLFWASLTGRLI-NPLDTSEGSIW 131

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDI 573
           I +DI EQ+ +                        RL   +       D+    +  +  
Sbjct: 132 IVDDIDEQRHAQI----------------------RLHAAIREKQALFDHAMVGIAFVRN 169

Query: 574 DKYKKINDVL----GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--S 627
           ++  + N       G A G+    S  +R      +  +     G   G     E    +
Sbjct: 170 NRLTRCNRHFEQMLGYAPGELSEGSARQRHFSDADWEAMECHGHGEPNGTGFTGEMELLA 229

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +  A  +R     P+   +  I +   +           S +    AELA  HA+  
Sbjct: 230 KDGSTVACEVRSQPLDPLFPEQGCICIAMDV-----------SEQRKTQAELARMHAELE 278

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-H 746
                 + ++S           D     E       Y P+  L +  ++   A       
Sbjct: 279 QQVQERTRQLSETVESLHREINDRKHDQERIYWLAHYDPLTGLPNRTLLAERAQHAIRVA 338

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            + G   +  F+ +     +  ++   + + +  +I             + 
Sbjct: 339 QENGTPLAVVFLDLDHFKHVNDSLGHRVGDALLVEIAKRLRAVVRDRDTVS 389


>gi|16124908|ref|NP_419472.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|13421870|gb|AAK22640.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
          Length = 694

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 136/559 (24%), Positives = 251/559 (44%), Gaps = 14/559 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               D +R ++A+     +V ++D+   +V  +     +             + L  +H 
Sbjct: 143 RAERDRQRLTMALELDDLLVREYDLRTRQVFFSGHAPDLQKY-----CTFKDDPLEIVHP 197

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            DR     ++ S           EF+++  D    W+    +     +G   + + +  D
Sbjct: 198 EDRQRCADLVASRKLGEARVF--EFKLKRDDGIETWVRSVGKVFIGQDGQPEKLVNLFKD 255

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++++  E I   AF+D LTG+PNR  F  R    +  ++        +++ID+D +K 
Sbjct: 256 ITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVS-ASETLGEMFGLIMIDVDHFKD 314

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L  L   +    +  D +ARL G+ F +IL   +    +     A++
Sbjct: 315 INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQ 374

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  PI    R  T +ASIG A         + M+KNA++A+Y AK  G N    F  S
Sbjct: 375 DLLRRPIQHGGRSFTASASIGAALHGDLDADPAHMIKNADIALYRAKEAGRNRSIVFEPS 434

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   ++   D+  A+  +E  L Y P++ + +  + G EAL++W HP+ G ++ + 
Sbjct: 435 MRSEVERRLELLRDVRAALTENEFTLYYQPVVDIRENRVAGFEALMRWVHPEQGVLTPAR 494

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           FM   E+  +   +     E   + + +W D+       + +NI+S       L E +Q 
Sbjct: 495 FMAAFEDQDLSLKLGDVAFETALKQMRAWLDEGVEFG-RVAVNISSAQFRSGRLAEEIQE 553

Query: 817 LISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +++      R+ +  +E+V MG   +     + RL + G+ + LDDFGT  + L+ L  
Sbjct: 554 RLARWSVPCERLTIEVTENVYMGWGSDLVSETVRRLHEAGVMIALDDFGTGYASLANLRQ 613

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P D +K + S +     +  AI++++I +  ++   ++A+ +     ++ L R GCD I
Sbjct: 614 FPIDRLKIDKSFVQN--GEDEAIVKAVITLGTSMGMKVVAEGVEDAEQLEALARYGCDQI 671

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  H   P+    +   LK
Sbjct: 672 QGYHFGRPMPAGEVAGFLK 690


>gi|303248671|ref|ZP_07334925.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio fructosovorans
           JJ]
 gi|302489927|gb|EFL49853.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio fructosovorans
           JJ]
          Length = 569

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 138/505 (27%), Positives = 251/505 (49%), Gaps = 9/505 (1%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R  L + +  +  R   +        +      R   ++   G +   + I  DI+ QK
Sbjct: 65  VREGLAAVLKGKAPRYAMDLSY----GKTQSTSWRSMVVTPLTGALPGALVILTDISRQK 120

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E IL +AF D LTG+ NR  FL+RL   +     +      V+ +DID++K +N   
Sbjct: 121 QLEEHILHDAFHDTLTGLFNRALFLNRLDQAIKRLKRNPEALYAVVYLDIDRFKLVNKTF 180

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+ +LL+  D LAR  G+ F I++         +  A ++ + +A 
Sbjct: 181 GHVTGDRLLMVIANRLQKLLRDVDTLARFGGDEFAILVEDVAGLADASAMADSVLRHLAA 240

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L ++EI VT SIG    + +     ++L++A+ AMY +K  GG+H   F        
Sbjct: 241 PFRLKKQEIFVTCSIGVVLGSGAYEHPDQVLRDADNAMYSSKEHGGDHYTVFDAGMRVLT 300

Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++ +  L  A+E+ E+ + Y PI+ L   EI G+EAL +W HP  G I  SEF+ IA
Sbjct: 301 QRRMEMELALRHALESGEMTVHYQPIVSLTTGEITGVEALARWFHPTQGTIPPSEFIPIA 360

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISK 820
           EE  +I  +   +L +  R +++   +      + + +NI+ +     +  E + A++++
Sbjct: 361 EETGLINDLGALVLRQACRRMVALGKENPDATHLTLSVNISGRQFKRPDFVEEVAAILTE 420

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   PS +KL  +ESV+M N + +   + RL+ + + + +DDFGT  S LSY+   PFD+
Sbjct: 421 TDIDPSLVKLELTESVLMDNADEAVDTIKRLKALSVKVVIDDFGTGYSSLSYIQRFPFDS 480

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    E      I+R+II MA  +   ++A+ +        L+ + C+  Q  
Sbjct: 481 LKVDRSFVGNMNEAEQNMEIVRTIIAMAHKLGLEVVAEGVELAEHRTALSDLRCESAQGF 540

Query: 939 HVASPLGFNSILKLLKERFPLVKNT 963
           + + P+    +  L+++++ +    
Sbjct: 541 YFSKPVAGEELETLVRKKWNITPPA 565


>gi|299537092|ref|ZP_07050395.1| sensory box/GGDEF family protein [Lysinibacillus fusiformis ZC1]
 gi|298727333|gb|EFI67905.1| sensory box/GGDEF family protein [Lysinibacillus fusiformis ZC1]
          Length = 571

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 133/557 (23%), Positives = 243/557 (43%), Gaps = 37/557 (6%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471
            S  IV   D              I       + G     L    H   +  FR +  + 
Sbjct: 26  NSSIIVAITDRTGKITFVNDHFCKISKYTREELVGQDHRLLNSGFHP--KSFFREMWKTI 83

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                     E   RA D   +W+   I P  +  G   +YI I  DIT QK  ++ I  
Sbjct: 84  --GNGDMWNGEVCNRAKDGSLYWVKTTIIPFLDERGKPYQYIAIRVDITAQKD-IKKITH 140

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LTG+PNR+    RL      S      +  +  ID++++K IND LG  +GD  
Sbjct: 141 IAYHDELTGLPNRRKLEQRLENEFHQSRRTGE-KFALFFIDVNRFKHINDGLGHIIGDMF 199

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           LV ++ R+  +    +   R + + F +IL   N+  +I + A  +         +   E
Sbjct: 200 LVEMSNRLRNIDHTSNSFYRHNSDEFVMIL---NDVSRIEEMAKEIIGVFHESFIVDTYE 256

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
              + SIG + +     +  E+LKNA++AMY AK   GN    +R +        ++++ 
Sbjct: 257 FYASISIGISVFPDHANSVEELLKNADIAMYAAKSTRGNQYRLYRDNMDEANDKWLLLET 316

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++   L L Y P I L  + ++G+EAL++W  P+ G+I    F+  AE+  +I  
Sbjct: 317 KLHQALKQDRLELHYQPKIDLKTDSVIGMEALLRWYDPELGHIPPDRFIPFAEDCGLIND 376

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I +++L +       W +  +   + + +NI+   +      + ++++I++T   P+ ++
Sbjct: 377 IGVWVLRKACAQARQWNE-VHDLSLRVAVNISPIHISTGGFVDMVRSVIAETGIDPNLLE 435

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E  ++   E     + +LR++GI+++LDDFGT  S L+YL   P D +K + + + 
Sbjct: 436 IEITEMSMLDYTEDLIDTIKQLRELGITISLDDFGTGYSSLNYLKKFPVDVLKIDRAFVR 495

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID-----------IKELTRMGCDYIQ 936
               ++   A++ ++I +A  +                         +  L   GC+Y+Q
Sbjct: 496 DIVPEKSGIAMISAMISLAHALNL-----------QVVAEGVEEEAELNVLREHGCEYVQ 544

Query: 937 DSHVASPLGFNSILKLL 953
             + + PL       L+
Sbjct: 545 GYYFSKPLSVEDFTNLI 561


>gi|149917917|ref|ZP_01906411.1| hypothetical protein PPSIR1_36879 [Plesiocystis pacifica SIR-1]
 gi|149821183|gb|EDM80587.1| hypothetical protein PPSIR1_36879 [Plesiocystis pacifica SIR-1]
          Length = 714

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 148/578 (25%), Positives = 286/578 (49%), Gaps = 8/578 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           +V+            +    +R +LA+ G+ D +W+WDI R RV  +     +LGL +  
Sbjct: 136 SVVAQARNHNALRGRLTELRDRFALAIRGARDGMWEWDIARSRVFYSQRWRELLGLENVH 195

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +   +  WL  +H  D    RT L + +       + E R+R    Q+ W++ R     N
Sbjct: 196 IEASLDTWLDRVHPQDIHRLRTDLHNHIQGLSPVHENEHRIRDGHGQWRWVLSRAVIHRN 255

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++G  LR  G   DIT+ ++  + I   + +D LT +P +    +RL   ++L+ + D+ 
Sbjct: 256 NHGKALRVAGSLTDITQYRQREKMIREQSRRDQLTQLPEKPVLFERLARAVELARSHDDF 315

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +++++ D+  +I D  G+A  + +L  + +R+   ++  D+L R S ++F I+L + 
Sbjct: 316 EFIMLLVETDRLAQIRDSFGLATANAMLALMAKRLRACVRPEDLLFRFSTHKFAILLENV 375

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            ++      A  + ++++ P ++       T SIG  S  +      E++ +   A   A
Sbjct: 376 EDASVGTHVADRIHQALSEPFDIEGERTFTTVSIGMTSSANGYRRVEEVIADVSAATDTA 435

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR----LMDEEIVGL 738
           + RG N  E +   +       + ++  L  A++  +L L + PI+R      + E V  
Sbjct: 436 RDRGRNRHEIYDTSMRIEARTLLALEMALRRAIDEDQLSLHFQPIVRVDPEHGERETVAF 495

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E+L++WDHP+ G +S  EF+ +AE+  +I  +  + +    R +  WR +  MP + + +
Sbjct: 496 ESLMRWDHPERGPVSPGEFIPLAEDTGLIIPMGRWAIREAVRRLQRWRREFGMPDLAVSV 555

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++K + D +L E +   + ++      +KL  +ESV++   +    LL  +R  GI +
Sbjct: 556 NLSAKQVADPKLLETVDNALQESGLPGRCLKLELTESVMLDRADEVMALLQDIRDRGIEI 615

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL   P D +K + S ++     E+   ++R+I+ +A N++  ++A+
Sbjct: 616 WIDDFGTGYSSLSYLHRFPVDGLKVDRSFVSQLDGSEESETMVRTILNLASNMQLRVVAE 675

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            I  E+  ++LTR+GC   Q    A  L    + + LK
Sbjct: 676 GIETEVQAEQLTRLGCGLFQGWLFARSLPVEKVREHLK 713


>gi|104780510|ref|YP_607008.1| sensory box-containing diguanylate cyclase [Pseudomonas entomophila
           L48]
 gi|95109497|emb|CAK14198.1| putative sensory box-containing diguanylate cyclase [Pseudomonas
           entomophila L48]
          Length = 860

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 144/623 (23%), Positives = 272/623 (43%), Gaps = 17/623 (2%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
              AW         LW  +   L   +I   ++  L    +     + Q +L     +Q 
Sbjct: 242 YHLAWDSPEPGRQLLWAVLPPLLGVLLIMGLVLAYLFRHALRSSQAIDQSLLRLQQSNQA 301

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +  +R       + D +W+ D        +     + G       G   N L      
Sbjct: 302 LEASEQRFRAVAEAASDWIWETDRHHRLTYLSQRFVKVTGYPVEHWLGQPLNQLLAC--- 358

Query: 460 DRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           D       LDS       +L         A  Q  +  +  R +   +G +  + G A+D
Sbjct: 359 DTTPLLPWLDSQADSDAQQLANLRCNYDDATGQNRYCRVSARSIVF-DGKLAGFRGTASD 417

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++  +   I   +  D LTG+ NR      L   L   +    L     ++D+D +K 
Sbjct: 418 ITDEVAAHARIQHLSMHDALTGLANRNKLSRHLEQALLRGSDSPPLTLL--LLDLDSFKP 475

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD VL  +  R+ +  +  D++ARL G+ F ++L   +   +I  F   + 
Sbjct: 476 INDSLGHPAGDAVLQEVANRLRDTTRDDDLVARLGGDEFVLVLHGVDTRSEIDRFCARLL 535

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
             +  PI+    ++ + ASIG A        + E+++ A++A+Y AK  G N    F   
Sbjct: 536 DLLQQPISYEAHQLHIGASIGVAQTRVQGYDAGELIRCADIALYQAKADGKNTWRYFSPE 595

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++     R  ++ DL  A++  E  L Y P  RL D  IV +EAL++W HP+ G +    
Sbjct: 596 MNQQIQYRRQLENDLRRAIKQHEFVLHYQPRYRLDDLHIVSVEALLRWQHPQEGLLGPDT 655

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  ++L    R    W ++       + +N++      +++   ++ 
Sbjct: 656 FIPLAEQSDLIVPLGRWVLAEACRAARDWPEELL-----VSVNLSPAQFSRSDVVADVRQ 710

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T +   R++L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL   
Sbjct: 711 VLLETGFPAQRLELEITENVMLNDIEGALGTMLALKELGVRLNMDDFGTGYSSLGYLRTY 770

Query: 877 PFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           PFD++K +   + G +       A++++II + + +  T+ A+ +  E  ++ L +  C 
Sbjct: 771 PFDSIKIDKRFIAGLSSQSGNDKAVVQAIISLGQAMGLTVTAEGVETEQQLQALGKENCH 830

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            +Q  +++ P+       LL  R
Sbjct: 831 EVQGYYLSKPVDREGFEALLSAR 853


>gi|148548688|ref|YP_001268790.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148512746|gb|ABQ79606.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 562

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 141/562 (25%), Positives = 263/562 (46%), Gaps = 18/562 (3%)

Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
              AV  +   ++ + D+  +         +I G +   + G     L   +H  +   F
Sbjct: 5   YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPTFF 60

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523
             +  + V  R    + E   R+ D   +W+   + P+ +   G + +Y+ I  D+TE++
Sbjct: 61  VGMWRALVAGR--VWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKR 118

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +      D LTG+PNR    D L   L  S   + +   V ++D+D +K +ND  
Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRR-EGISLAVCMLDLDGFKAVNDGY 177

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +LV + +R+  +L+  D +ARLSG+ F +IL   ++  ++      + +++A 
Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAA 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E  ++++ASIG   +      +  ++++A+ AMY AK RG N    F        
Sbjct: 238 PCVVREHTLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                    +  A+ N EL L Y P + L   +++G E L++W  P  G +   +F+   
Sbjct: 298 KATHQTVARVRRALRNGELCLYYQPKVNLRSGKVLGFEGLLRWQRPGRGVVPPGDFLPWV 357

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ +    + +W+ Q    P  + +NIA++ L  N+  E +Q L++  
Sbjct: 358 EQTDLIVEIGEWVIGQALSQLQAWQRQG--QPWSLSVNIAARHLQRNDFAERLQQLLAAY 415

Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L   ESV + N +     L   R +G+  +LDDFGT  S LSYL  +P  T
Sbjct: 416 PAVDPVLLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      +  +A+  ++I +A+     +IA+ +      + L  +GC+  Q  
Sbjct: 476 IKIDQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535

Query: 939 HVASPLGFNSILKLLKE-RFPL 959
            +A P+  + +    +  R P+
Sbjct: 536 CIARPMPASDVQAWAQAYRQPV 557


>gi|153950724|ref|YP_001399658.1| sensory box-containing diguanylate cyclase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152962219|gb|ABS49680.1| sensory box-containing diguanylate cyclase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 855

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 142/573 (24%), Positives = 269/573 (46%), Gaps = 15/573 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    I    AT      + +  ER       + D +W+ D        +P    I G 
Sbjct: 284 LVIRRAISGAKATDRSRAALAASEERFRHVAESASDWLWETDAELQVTYLSPRFLIISGW 343

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +     G   +    ++ +       +  + +   R  LQ  +   +A        I  +
Sbjct: 344 SVDHWLGRHLD--SLLNCDITSLRTWLQHTHLTDSRNELQCTY--FSAKGSKRVCRIHAK 399

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+    G+I+ + G A+D+T + ++ + I   +  D LTG+PNR    + L   L   A 
Sbjct: 400 PII-QQGEIVGFRGTASDLTREIEAEKRIEHLSLHDALTGLPNRTLMTEFLENKLHNLAA 458

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            ++    ++ +++DK+K +ND  G   GD VL  +  R+   L+  D+++R  G+ F +I
Sbjct: 459 VEHP-LVILNVNLDKFKPVNDNFGHVTGDQVLYQVAERLRSCLRDKDLVSRQGGDEFILI 517

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   ++S +I      +   I MP  + E+EI + ASIG        + + E+L+ A++A
Sbjct: 518 ISDLSSSYEIELLCARVITRIQMPYVINEQEIYLGASIGITLAPQDSMQAEELLRFADIA 577

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M  AK+   N    +           I+ +  L LAV+ SE  L Y P  R  D +++G 
Sbjct: 578 MCEAKNSARNRWRFYASEMNDRLMQRIELEKFLRLAVKKSEFCLYYQPRYRTDDMQLIGA 637

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G +   +F+ +AEE  +I AI+ + L +  +D ++W        + + +
Sbjct: 638 EALVRWNHPVLGLLMPDQFIALAEETGLITAISDWTLLQACQDAMTWP-----TSLIVSV 692

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI++ +     L E ++  +  T     R++L  +E +++ + + +  ++  L+ +GI L
Sbjct: 693 NISAIEFRGQCLIERVRQALLVTGLPSHRLELEITERIMIEDADGALKIMTALKTLGIRL 752

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL   PFD +K + S +     + +  +I+  II +   I  T+IA+
Sbjct: 753 SIDDFGTGYSSLNYLHRFPFDGLKIDKSFIDKLTESHEGQSIVEGIINLGHAISMTVIAE 812

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     +  L  + CD +Q   +A P+   ++
Sbjct: 813 GVETAEQLTYLQSLHCDEVQGYFLAKPMPVEAL 845


>gi|90420690|ref|ZP_01228596.1| putative sensory box/response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334981|gb|EAS48742.1| putative sensory box/response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 766

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/675 (20%), Positives = 279/675 (41%), Gaps = 41/675 (6%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG------LWMAITKRL- 362
            AR+ L +  L  +  ++     G +  +L+      +    IG        ++ T  + 
Sbjct: 93  FARLALFAGTLLGSVPLVLFAQAGADGRLLIASTCAGLIATGIGLAVVPRAAISFTGPIV 152

Query: 363 DNDIIQPALVGG--------LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS----LA 410
               +  A  G         L+ I     F  I H+            + ERQ     L 
Sbjct: 153 AGSFVALATTGEAFYIFVAVLLAIYSGFIFATIVHLSRLVTMRAASQVELERQQELTNLL 212

Query: 411 V----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           +      + D +W+ D        +     +       +          +    R     
Sbjct: 213 LNDFEENASDWLWETDGDLRLRHVSARFGEVANTRIADLQDRPLG--ELLPPPVRTGEAH 270

Query: 467 ILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                      RL +   V   D      W  +  +P+ ++ G    Y G+ +D+T++K 
Sbjct: 271 AAAMLWSSIGARLPFHKIVLPVDVSGSNRWWALSGKPIIDTAGRFSGYRGVGSDVTQKKT 330

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LT +PNR  F ++L      +   D +R  V+ +D+D +K +ND  G
Sbjct: 331 TDDRLAYLASHDALTELPNRSLFQEKLAEA--RNGDPDQVRFAVLRLDLDAFKSVNDTFG 388

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L ++  R+         +ARL+G+ F  I+ + ++    A+ A  +   I+ P
Sbjct: 389 HGIGDALLRNVAGRLLSFADPARTIARLAGDEFA-IVANGHDREAAAELAGHLVDRISAP 447

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702
             + +  I+V  SIG A+   +     E+++ A++A+Y  K  GG     +  ++     
Sbjct: 448 YRIGDLRISVGVSIGVATAPENGS--EEVMRRADVALYRMKQEGGRSFRFYEAQMDEQIE 505

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +   +  +L  A+E  E  L + P++      I G E L++W HP  G +   EF+ +AE
Sbjct: 506 ECRALTGELRGALERREFILHFQPLVSARAATIEGFEVLLRWQHPTRGLVPPDEFIPLAE 565

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  +  +++    R   +W        + + +N++      +++   ++  + ++ 
Sbjct: 566 QSGAIIPLGQWVIREACRIAAAWPS-----KLTVAVNLSPIQFRHSDVVAIVRDALQESG 620

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +  R++L  +ESV +   +    +L  LR +G+SL+LDDFGT  S LSYL   PF  +K
Sbjct: 621 LAAERLELEITESVFLEATQEILDILRTLRGMGVSLSLDDFGTGYSSLSYLRRAPFTKIK 680

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +    + +   AI+R+++ +  ++  T+ A+ +        L   GC   Q    
Sbjct: 681 IDRNFVRDLPDAKTDVAIVRAVVQLGTSLGMTVTAEGVETLAQQTCLAEQGCHQFQGYLY 740

Query: 941 ASPLGFNSILKLLKE 955
           + P+  +    L+++
Sbjct: 741 SRPVPADEAEALIRK 755


>gi|303238578|ref|ZP_07325112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
 gi|302593976|gb|EFL63690.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acetivibrio cellulolyticus CD2]
          Length = 861

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 166/774 (21%), Positives = 324/774 (41%), Gaps = 35/774 (4%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
           +  LL        MV R    +  +      L  + +   F +    +  G + ++    
Sbjct: 108 IIFLLLFVFFAVVMVLRKISHLLIYMGIAGTLTMVLL---FAADKPGVSRGIVALFIVLF 164

Query: 258 EIALSSS--LIIFLFMYLHWNRWHAK-VGYITFSGIACI--AILFCMSFYYPMVTASIAR 312
                 S    ++    L  +  H + +  I   GI       +   +  +  +      
Sbjct: 165 YTVAFMSMKFKLYTKKELEISEAHYRSLVEIAPLGIIIHKDGEILYTNPVFLEMMGLSKE 224

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
             +    +       +     ++     I   +      + L         ++I   A  
Sbjct: 225 DNIIGKQIVELIHPDHRNAVKFDIEKRFIRERLDFVEQKLVL------LDGSNIEVEADS 278

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +  +   +   + + +       + +     R    +  +   V+ +      V   P
Sbjct: 279 IEVKHMGKSVVMCIFKDITDRKKTERMLIEAEFRYRGLIESTLVGVFLY--RDKFVYVNP 336

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQ 491
            +  +L  +   ++    +    IH +D    + ++D +     G  +  +FR+   D  
Sbjct: 337 YLEKLLDYSKEELY--SMSLFDVIHQDD----QYVIDQYNPQCAGTDIIRQFRIIKRDKT 390

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             ++          +G     +    DI+  KK+ E I   A+ D+LT +PNR    D L
Sbjct: 391 IIFVEAHAINTI-YDGSPTTIV-TLLDISHIKKTEEQIKYIAYHDSLTDLPNRYMLNDYL 448

Query: 552 TTILDLSATDDNLRPTV---MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             ++     D++    V   M++D+D++K IND LG + GD VL    +R+   +   D+
Sbjct: 449 DKVISCGNPDNSTNTAVIGVMLVDLDRFKIINDSLGHSFGDIVLKEAAQRLKSCVGENDV 508

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R  G+ F I+L    ++ K A+ A  + +    P  + +++   T S+G + +     
Sbjct: 509 VFRYGGDEFVIVLPD-TDTRKCAETAKRITQLFGQPFIINDQKTFSTISVGISLFPEDGS 567

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHP 726
            +  ++KNA++AMY  K  G N+ + +  S  R    ++ ++  L  A+EN+E  L Y P
Sbjct: 568 NAEMLIKNADVAMYVVKDIGRNNYQFYHESFNRELLRKMELENGLRKALENNEFVLYYQP 627

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I L   ++VGLEALI+W HP++G +  +EF+ +AEE  +I  I  ++LE   R   SW+
Sbjct: 628 QIDLKSGKVVGLEALIRWYHPEYGLVYPAEFIPLAEETGLIVPIGKWVLETACRQNKSWQ 687

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D      I + +N+++  +L ++L   +  ++ KT   P  + L  +ES +M + E++  
Sbjct: 688 DAGLG-NIPVAVNVSAYQILHSDLSSVVSEVLDKTKLDPRCLILEITES-IMQDVEKTDQ 745

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIP 904
           ++  L+   + + +DDFGT  S +S L    FD +K + S      + + +I  ++ II 
Sbjct: 746 IINVLKSFNVKVAIDDFGTGYSSISLLKNHQFDILKIDPSFTFDLKKDKNSIDLIKLIID 805

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            A     +IIA+ I  E   K LT  GC + Q  + + P+   +I + L E  P
Sbjct: 806 FACQRSYSIIAEGIEDEEQAKILTEKGCTWGQGFYYSKPIPAGTIEEFLSELLP 859



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 87/323 (26%), Gaps = 24/323 (7%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R  M      +   +L    +         +                 ++        +
Sbjct: 13  TREIMAFRIICLLGAIL--SPLIGVLWHFTYSGDVPIARTNTFFYSSMFTALFG--SIYF 68

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L       +     F+ I C    F + +   +   +   I L   V +    ++     
Sbjct: 69  LSLKNNFIQKNTYIFANIICYTATFVILYVAYIENYNQNIIFLLLFVFFAVVMVLRKISH 128

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                        L+    I   + +      D    +     + IV+      +     
Sbjct: 129 -------------LLIYMGIAGTLTMVLLFAADKPGVSRGIVALFIVLFYTVAFMSMKFK 175

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +          V  +   +       + + T P    ++GL+    +   +  
Sbjct: 176 LYTKKE-LEISEAHYRSLVEIAPLGII-IHKDGEILYTNPVFLEMMGLSKED-NIIGKQI 232

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           +  IH + R+  +  ++      R     E ++   D     +      + +    +   
Sbjct: 233 VELIHPDHRNAVKFDIEKRFIRERLDF-VEQKLVLLDGSNIEVEADSIEVKHMGKSV--V 289

Query: 513 IGIANDITEQKKSLEGILCNAFQ 535
           + I  DIT++KK+ E +L  A  
Sbjct: 290 MCIFKDITDRKKT-ERMLIEAEF 311


>gi|229132572|ref|ZP_04261421.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228650918|gb|EEL06904.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 800

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 165/761 (21%), Positives = 307/761 (40%), Gaps = 30/761 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + I   F   + N  S           +    ++  
Sbjct: 56  ILFLSIGDVFLSFIFPIIDLLLLLLGISLIFRPAIFNAKSK----LFIFILVLTGLAITD 111

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318
           +L+ YL  +     +  +       + ++   +             ++  +  +  L   
Sbjct: 112 YLYFYLQDDLSDRSLILLRCLYRVFLLLIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 171

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 172 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 225

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   +     +      + +L
Sbjct: 226 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            DR      L          LQ   +     +   W  + 
Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +TGI NR  F   L   +  +
Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTGIGNRIFFQQELEKSIGRA 401

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               +    ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 402 QKTQD-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +      ++
Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 579

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + +
Sbjct: 580 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKM 638

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I K     S I L  +E + M + + +   L  L+  G+
Sbjct: 639 GINLSAIEFEQKDFVQTIISTIEKVGVPASSIDLELTERIAMVDEKETLAKLKALKSYGV 698

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+ +II +A  +   +I
Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 758

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +  +  +  L R  C  IQ  + + P+  +  +K L  
Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLSR 799


>gi|320352699|ref|YP_004194038.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121201|gb|ADW16747.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 961

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 257/564 (45%), Gaps = 10/564 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A  +F +   +  +        + + ++  D     +       TI G  +    G   +
Sbjct: 399 AEIHFRKSAENFLQIYKRIFDNATEGIFITDQTGKILAVNDAFTTITGYEAHEAIGRNPS 458

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L     +D D FR +  S +   +G  + E   +  D   +   + I  + N    IL 
Sbjct: 459 MLKS-DQHDADFFRQMWQSLI--GKGSWEGEIWNKKKDGTVYPEWLTINSIRNERKQILY 515

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y     +I E KK  + I   A+ D LT +PNR     +L   +  +      R  V  I
Sbjct: 516 YFATFYEIGELKKREKQIAFMAYHDILTRLPNRAFLERKLAKTIHDAKQQGG-RMAVFFI 574

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K INDV G   GDD+L+ +++R+  +L     L RL  + F +++   +N   I 
Sbjct: 575 DLDNFKNINDVFGHHQGDDLLLQVSQRLSSILGGAHTLCRLGSDEFILLMERIDNESFIY 634

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  ++  +  P  L  ++I V ASIG + +     T+ EM+++A++AM+ AK  G N 
Sbjct: 635 LMANRIQAVLKKPFLLEFKKIYVNASIGISVYPDDGDTAMEMIRSADMAMHRAKREGKNR 694

Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F   +     ++   +  +   + + E  + Y P + +   +   LEALI+W+    
Sbjct: 695 YVLFTKGMHQELYEKFRTENGIRFGLLHREFVVHYQPKVNIDTRKTSSLEALIRWN-KGG 753

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             IS S F+ IAEE  +I  I LF+LE      +  ++Q     + + +NI+ +   + +
Sbjct: 754 KLISPSVFIPIAEESSLIDDICLFVLEETCAFHVVMKEQ--DIAVPVSVNISPRQFHNAD 811

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + ++ L+ +   +P  ++   +E+  M + E +  ++ RLR++GI  ++DDFGT  S 
Sbjct: 812 FVDLVEDLLGRYQVAPHYLEFEITETTAMKDVEHTLAVMSRLRELGILFSIDDFGTGYSS 871

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L  L  +P +T+K +   +         I+ +II +++ +   ++A+ +  E  +  L  
Sbjct: 872 LGSLNKMPVNTLKIDKQFVDNLDANSG-IIATIIAISQQMHLNVVAEGVETEEQLLGLGA 930

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
           MGC   Q  + + P+    IL+ L
Sbjct: 931 MGCHEAQGYYFSRPVSDADILRYL 954


>gi|149376152|ref|ZP_01893917.1| Two-component response regulator [Marinobacter algicola DG893]
 gi|149359557|gb|EDM48016.1| Two-component response regulator [Marinobacter algicola DG893]
          Length = 858

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 143/560 (25%), Positives = 263/560 (46%), Gaps = 17/560 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +D       +  + + +   D        V   P    + G +   + G    +L     
Sbjct: 297 ADLHLLKRGIEANPNGMLMVDARSPDMPVVYANPAFTEMTGYSYDEVMGSNCRFLQG--- 353

Query: 459 NDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +     L++     + +  +  E      D    W  +RI P+  ++G    +IG  
Sbjct: 354 --EETALEALETIRQGLHHQTEVNVELINYRKDGTPFWNHLRISPVFGNDGLCTHFIGTQ 411

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+T Q++    I   A  D LTG+PN  SF + L   L L          V+ +D+D +
Sbjct: 412 QDVTHQREQEAQITYQATHDLLTGLPNGVSFQETLHDALIL--DGGRGALAVLYLDLDGF 469

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VG+ VL+++ RR+ +L      +ARL G+ FG++L    N  ++   A  
Sbjct: 470 KPINDELGHHVGNQVLITIARRLADLTAPEATVARLVGDEFGLLLPGYTNRKEVTQLAER 529

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +A PI++  + + ++ASIG A  ++      E+L+ A++A   AK +G N  +   
Sbjct: 530 ILVHLAKPIDVDGQMVHISASIGIACNSAPLDAPHELLQFADIARERAKRQGKNTWQWHS 589

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +      V ++ DL  A+  ++  + Y P++  +   +  +EAL++W HP  G IS 
Sbjct: 590 GLKAERSQHSVKLRHDLHTALNENQFEIHYQPLVDAVTGRMRSVEALVRWKHPTRGMISP 649

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+   I  + L++L++   +I  +  Q     + + +NI+S   +     + +
Sbjct: 650 GEFIPLAEQTGQIIPLGLWILKQACIEIADFNAQ-RERGLRVAVNISSLQFIRGGFLDDV 708

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++++T   P  ++L  +ESV++   E    L+  L+ +G+ + LDDFGT  S LSYL 
Sbjct: 709 RRVLAETGLPPQLLELEVTESVLLDGAEPVIELMETLKTLGVRVALDDFGTGFSSLSYLR 768

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   VK + S +  +T      AI++ +I MA +++  ++A+ I       +L R  C
Sbjct: 769 DLPTHKVKLDRSFVEKTTTDHRIAAIVQGVITMAHHMDMIVVAEGIETREQQDDLARRHC 828

Query: 933 DYIQDSHVASPLGFNSILKL 952
           D +Q    A P+    + KL
Sbjct: 829 DILQGYLFAQPMPLADLKKL 848



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 5/175 (2%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
           +          PA         +  G  ++   +     ++   +  E          D 
Sbjct: 133 LLGTFATYYRAPATPTAGAQRNLARGAALVALAILRHRDAENHRTLSEWHRTLFDNHPDA 192

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+ +D+     +    +  I G ++G ++G   N    I  + R   +   D        
Sbjct: 193 VYTFDLDGRFQSCNKALEKISGYSAGKVYGLHFNLF--IEPDYRPQTQAAFDRARNGE-- 248

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            + YE     A    +++ +   P+    G+I+   G+  DI+++K     +   
Sbjct: 249 VITYETIGTHAFGHPYFLEVTNFPVI-IQGEIVGVYGLCRDISDRKHQDADLHLL 302


>gi|229159708|ref|ZP_04287718.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228623787|gb|EEK80603.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 569

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 139/566 (24%), Positives = 258/566 (45%), Gaps = 28/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S      +A+  S  IV   D              I       + G     L    H   
Sbjct: 14  SSLRDLKMALDESS-IVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHP-- 70

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  F+ +       +      E R +A D  ++W+   I P  N  G+  ++I I NDI+
Sbjct: 71  KAFFQILWKRISNGK--VWTGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDIS 128

Query: 521 EQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +K++ +            A+ D LT +PNR   +  +  ++      +N+   ++  D+
Sbjct: 129 SRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNKMIV-----ENIEFGMIYFDL 183

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND LG  +GD +L  +  R+  +L   D+LARL G+ F  +L  ++   ++   
Sbjct: 184 DRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFV-LLTKKHTQDEMRQL 242

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++      P  L   E+ ++AS+G  S+         +LKN++LAMY AK +G N   
Sbjct: 243 ATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAAC 302

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F           +  +  L  A+ + EL +   PII L  ++  G+EAL +    + G 
Sbjct: 303 FFTDELRAKINRRMKIEFALQKAIRDEELDVALQPIIDLKTKKYTGVEALARCSTEE-GP 361

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AEE  +I  +  ++LE+  R   +  +      + + +N++ + L+     
Sbjct: 362 ISPGEFIPVAEESGLIIKLGDWVLEKSCRLFKTLPE--YEEGLKLSVNLSIQQLMQKRFI 419

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ +T + P+R+ L  +ES+ + + +     L  +R +G+ + LDDFGT  S L 
Sbjct: 420 LSVRSILRRTGFPPNRLILEITESIAVRHFDYIIATLQEIRSMGVLIALDDFGTGYSSLY 479

Query: 872 YLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           YL  +P D VK + + +        +    I++S+I +A ++   ++A+ +        L
Sbjct: 480 YLKQLPLDIVKIDRNFIREFHYEHAQPERTIVKSVIEIAHSLNLAVVAEGVENVEQESLL 539

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             MGCDY+Q  + A PL    + + L
Sbjct: 540 QSMGCDYVQGFYYAKPLSVGELKEKL 565


>gi|77165235|ref|YP_343760.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254433836|ref|ZP_05047344.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883549|gb|ABA58230.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207090169|gb|EDZ67440.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 700

 Score =  509 bits (1311), Expect = e-141,   Method: Composition-based stats.
 Identities = 137/574 (23%), Positives = 252/574 (43%), Gaps = 22/574 (3%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG------LASGSMHG 447
               Q + ++  R S  +  + D+V   D+              LG       A  S+  
Sbjct: 137 RRQRQAVENERARLSSILEATPDLVAIMDLEGRIHYMNQAGRQWLGFIKKNHYAGASLLA 196

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W   +  +        L      R G  + E  +         +   I    N+  
Sbjct: 197 HYPLWTASLIRD--TAIPAAL------REGVWEGEAVILNPSGGEIPVSQVILSHRNALN 248

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +     IA DI+E+K   + +      D LT +PNR    DRL  +L  +  +  L   
Sbjct: 249 QVEFLSTIARDISERKHYEQELQYRVTHDTLTHLPNRILLRDRLIQVLAHAKRNQRLT-A 307

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D +K+IND LG   GD  L +L   +   ++  D L R  G+ F IIL    + 
Sbjct: 308 VLFLDVDNFKQINDGLGHLTGDKCLRTLAHHLAGCIRESDTLGRYGGDEFLIILSDLRSY 367

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      +R +++ P+ L   ++ +T SIG + +         +LK A+ AM+ AKH 
Sbjct: 368 SDVETLIKKIRATVSQPLKLNNNDVFITLSIGVSLYPQDGDDEEALLKTADAAMHTAKHS 427

Query: 688 --GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             G        ++   S+ + ++ DL  A+E  E  L Y P + +   +I  +EALI+W 
Sbjct: 428 SPGQCRYYRPEMNVRGSELLALETDLHRALEREEFVLYYQPQLDVTTGQITAVEALIRWQ 487

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +S  +F+ + E+  +I+ +  + L    R   +W  Q    PI + +N +++  
Sbjct: 488 HPNRGLVSPRDFIPLLEQTGLIEEVGKWGLNTACRQAKAWHSQGY--PIRMAVNCSARQF 545

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +   + +  ++ K    P+ ++L  +ESVVM + + +  +L RL+++G++L +DDFGT
Sbjct: 546 QQH-FLDIVHQILQKQSLDPAYLELEVTESVVMQDTQSATYILQRLKEMGVTLAIDDFGT 604

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P  ++K + S +      E+  AI  +I+ +  ++   ++A+ +  E  
Sbjct: 605 GYSSLAYLKRFPIHSLKIDCSFVRDVTKNEEDAAIAETILLLGNSLGLEVVAEGVETEAQ 664

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++      C  IQ   +  P+    +  L+  R 
Sbjct: 665 MRFFQDRHCHRIQGYWIGRPMPAKDLFPLITGRN 698


>gi|121594444|ref|YP_986340.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Acidovorax sp. JS42]
 gi|120606524|gb|ABM42264.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax sp. JS42]
          Length = 1047

 Score =  509 bits (1311), Expect = e-141,   Method: Composition-based stats.
 Identities = 131/590 (22%), Positives = 256/590 (43%), Gaps = 27/590 (4%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               V+Q +    +  Q +    E     +      V         V        I G   
Sbjct: 466  HLAVVQDISKRKHMEQVLRQSEEPLRNILNHMPVGVNQVQ-DGKIVFRNDRHVQICGYDI 524

Query: 443  GSMHGPIRNWLPYIHIND--RDNFRTILDSF----VGYRRGRLQ-YEFRVRAADNQFHWM 495
                  +  W   +  +   R++ R    +     +    G ++  E  + A       +
Sbjct: 525  RE-APDVDTWWRLVMPDAHQREHAREAWHAACTAALKNPDGAIRTVECVITAKSGVRRAV 583

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             +    + +S+      I    D +++K + E +   A+ D LTG+PNR+  LDRL   L
Sbjct: 584  ELSGMILGDSH------IVTMVDQSQRKAAEEEVRYLAYNDPLTGLPNRRLLLDRLEQAL 637

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +SA    L   VM++D+D +K IN+  G  +GD +L  + RR+ + +   + LAR  G+
Sbjct: 638  AMSARHQ-LCGAVMMLDLDNFKTINETQGPDMGDRLLREVARRLRDCVPEDETLARHGGD 696

Query: 616  RFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
             F ++L          + +  +    +  +I  P ++  ++     S+G A +   + ++
Sbjct: 697  EFVVVLKDLGADPQEAANRAEEMGQTILAAIRAPFDIDGQQHHTALSVGIAIFRGVRESA 756

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728
             E+LK ++LAMY AK  G + +  F        S+R  ++ DL   ++  +L L Y P +
Sbjct: 757  DELLKRSDLAMYEAKAAGRDTLRFFDPQMQAAVSERAALEADLRAGLDAGQLELFYQPKV 816

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                  I G EAL++W HP  G IS +EF+ +AEE  +I  +  +++      +  W   
Sbjct: 817  DQ--GRITGAEALVRWRHPDRGFISPAEFIPLAEESGLILRVGEWVMRSACAQLAQWSAH 874

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              +  + + +N++ +   +      +   ++ +     R++L  +E +++ + E +   +
Sbjct: 875  PVLGELTVAVNVSPRQFHEGSFVPQVLEALAASGADARRLRLELTEGMLLQDVEDTIAKM 934

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
             +LR  G+  +LDDFGT  S L+YL  +P   +K + S +    +      I R+I+ + 
Sbjct: 935  VQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDKSFVRDVLTDPNDAVIARTIVALG 994

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++   ++A+ +  E     L R GC   Q   ++ PL   +   L+ +R
Sbjct: 995  TSLGLRVVAEGVETEAQRAFLERNGCHAWQGYLLSPPLQAAAFEALVLKR 1044



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 4/147 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGL 440
           +     Q +         +     R       +   +   D    R V        +LG 
Sbjct: 338 LVLRRSQALDHAKETDTALRESEARLRAVFNQAAVGIAQTDSRTGRLVRMNQKFCDLLGY 397

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           ++  +             +D       L   +       + E R R  D    W+ + + 
Sbjct: 398 SAQELQQMRFQDFS--EPSDLAADLEQLQRMLAGELSEYRMEKRYRRKDGSEVWVDLMVS 455

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
           P+    G    ++ +  DI+++K   +
Sbjct: 456 PLRLE-GQPEHHLAVVQDISKRKHMEQ 481


>gi|71906145|ref|YP_283732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71845766|gb|AAZ45262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 952

 Score =  509 bits (1311), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/559 (25%), Positives = 246/559 (44%), Gaps = 16/559 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNF 464
           R + A   S   +   D     +          G A     G   R      H  D   +
Sbjct: 398 RLAAAAFESQTAMLVTDANGVILRVNQAFLRDTGYAVEECVGQTPRILRSGRH--DPAFY 455

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           + + +S      G  Q E   R  D   +   + I  +   +G++  YIG+  D++E+K 
Sbjct: 456 QKMWESIRS--SGVWQGEIWDRRKDGSIYPKWLTISAVLGDSGEVTHYIGLHQDVSERKL 513

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   A+ D +TG+PNR    +RL+ ++       N    ++ +D+D +K +ND LG
Sbjct: 514 AESRIHQLAYYDQVTGLPNRILLQERLSQVMAKCRASSNY-GVLLFVDLDNFKTLNDTLG 572

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA-----MRK 639
             VGD +L  +   +    +  D +ARL G+ F +I+         A          +  
Sbjct: 573 HNVGDLLLKQVGEVLRRCSRESDTVARLGGDEFAVIMSELGTDPSAAMQGAEAAARYLLS 632

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +     L       T SIG   +   + +   +++  +LA+Y AK  G N V  F  S 
Sbjct: 633 ELGRTFQLGNVIHRNTVSIGATLFKGEQESIESLMRQIDLAIYQAKGAGRNTVRFFDPSM 692

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +R  I+E L  A+E  +  L Y   I   D  I G E L++W HP+ G +S + F
Sbjct: 693 EIALRERAAIEEALRYAIEEEQFLLHYQAQI-GEDGRIEGAEVLLRWQHPERGMVSPAIF 751

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE   I  +  ++L++ A  +  W +   M  + + +N+++  L   +  E +  +
Sbjct: 752 IPLAEETGDIVLLGSWVLKQAAAQLARWAESPVMAGLVLAVNVSAVQLRQPDFVEQVTTV 811

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P R+KL  +ES+++ + E +   +  L+ IGI  +LDDFGT  S LSYL  +P
Sbjct: 812 LREAGADPGRLKLELTESMLVNDVEATIAKMQSLKAIGIGFSLDDFGTGYSSLSYLKRLP 871

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +         +AI  S++ +AK++   +IA+ +  E   + L  +GC   
Sbjct: 872 LSQLKIDQSFVRDVLVDANDVAIASSVVALAKSLGLGVIAEGVETEAQRELLAGIGCHCY 931

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + PL      +L+ 
Sbjct: 932 QGYLFSRPLPIGDFERLVS 950



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 116/378 (30%), Gaps = 21/378 (5%)

Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229
           LP +  +        V++   +  + +        +       N   +L+    +A  ++
Sbjct: 31  LPSVRFFSTPAQYLPVHTALEFVAMAVACMVFALAWNLRRQPGNSDKILLGAGFLAVCLI 90

Query: 230 -GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG----- 283
               ++ +  +  L+     E  I    +   ++++ ++     L      A  G     
Sbjct: 91  DFGHTLSYAGMPDLLTPSGPEKAINFWLAGRYVAAAALL-GIAVLPKRDLSACAGNCLVA 149

Query: 284 -YITFSGIACIAILFCMSFY----YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
             +  +  A    L    ++     P    +  +I    ++        +  +   +R  
Sbjct: 150 GVVVVAACAWWLGLMHPQWFPRTFVPGEGLTPFKIGAEYLLAALYALAAWGLLVKAKRTD 209

Query: 339 LLIPAWILIFIWFIGLW---MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
                W+    W  GL      +   + +       V   V  +++        VLA   
Sbjct: 210 NANLHWLAAAAWVQGLAEMFFTLYGEVTDLFNLLGHVYKAVAYLMVYRAMFDAGVLA--- 266

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +  +  R    +    D V+  +     ++       +LG    S+ G       +
Sbjct: 267 PFREMKLERSRLQALLSAIPDPVFVKNANGVFMSCNKAFERLLGAPEKSILGKTDY--DF 324

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +  D FR    +     R     E+   AAD           P+   +G  +  +GI
Sbjct: 325 FDKDLADFFREKDRAATAAGRPLSNEEWLEFAADGYSGLFETTKTPLY-LDGQAIGTLGI 383

Query: 516 ANDITEQKKSLEGILCNA 533
           A+DIT +K+    +   A
Sbjct: 384 AHDITRRKRIEADLRLAA 401


>gi|167631722|ref|ZP_02390049.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170685550|ref|ZP_02876774.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|254685102|ref|ZP_05148962.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254743263|ref|ZP_05200948.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|167532020|gb|EDR94656.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170670910|gb|EDT21649.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
          Length = 828

 Score =  509 bits (1311), Expect = e-141,   Method: Composition-based stats.
 Identities = 157/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 137 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 195

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 196 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 255

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 256 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 315

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502
           ++ G            D+      L   +G R      + RV+  + +  +     I P+
Sbjct: 316 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 371

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +    
Sbjct: 372 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 430

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ 
Sbjct: 431 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 489

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY
Sbjct: 490 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 548

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EA
Sbjct: 549 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 608

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G IS  EF+ IAEE   I +I  + L+   + +  W        + + IN+
Sbjct: 609 LIRWQHPELGLISPFEFIPIAEEASQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINL 667

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++
Sbjct: 668 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 727

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ +
Sbjct: 728 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 787

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 788 ETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822


>gi|324998105|ref|ZP_08119217.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia sp. P1]
          Length = 737

 Score =  509 bits (1311), Expect = e-141,   Method: Composition-based stats.
 Identities = 136/585 (23%), Positives = 252/585 (43%), Gaps = 32/585 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +    R       +   +   D     +     +A +LG   G + G  R+   +IH 
Sbjct: 147 ARWRSEARYGAVFENTALGISVADADGTILEANRALAGMLGYPPGELVG--RSVFEFIHP 204

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D       + + +G R G ++ E      D +  W  + +  + + +G     + +  D
Sbjct: 205 EDTPEMWPQIQAMLGGRVGHVRMEKSYFRKDGEQVWTQLVVSLIRDPDGTPRHLVAMIED 264

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE+ +    +   A  D LTG+PNR  F  RLT  LD      + R  V  +D+D +K 
Sbjct: 265 VTERHRLQSRLQHQAEHDPLTGLPNRALFFHRLTAALD---AGPDSRVGVCYLDLDGFKA 321

Query: 579 INDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +ND LG   GD +L ++ +R+  EL      +AR+ G+ F +++ +   + ++   A   
Sbjct: 322 VNDTLGHDAGDQLLSAVAQRLHDELGVDGHTVARMGGDEFVVLVEACTGTAQLNAVAERA 381

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKIT---------------SSEMLKNAELAMY 682
              +  P+ L  RE+ V+ASIG   W                     ++E+++ A+  MY
Sbjct: 382 LDVVRRPVALRGREVVVSASIGIVVWPVPHDDDPGGPQDTGEARQSGAAELMQAADTTMY 441

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G + +  F  +  R       +   +  A++  E  L Y P++   D  + G+EA
Sbjct: 442 WAKRDGRDRIAVFDQARHRHDVHLFELAGRMPGALDRGEFDLEYQPLVSFSDGRVAGVEA 501

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +W       +    F+ +AE+  +I  + L +L R   D  +W D        + +N+
Sbjct: 502 LARWRTADGDRLGPDVFIPLAEQTGLIVPLGLHLLHRACSDARAWVDADPSREFVLSVNV 561

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A + L   +  + +  ++ +T +    ++L  +ES +M    R    L  L ++G+ + +
Sbjct: 562 AGRQLRQPDAVQRIAGVLERTGWPAHALQLELTESDLMSASGRPVAALQELSRLGVRIAI 621

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---------KRIAILRSIIPMAKNIET 911
           DDFGT  S L YL  +P D +K  GS ++                 IL ++I +A ++  
Sbjct: 622 DDFGTGYSNLVYLHRLPVDVLKLAGSFVSAQDPQAADATREVDSPVILSAMIDLAHSLGL 681

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ +  +     L  +GCD  Q   +A PL    + ++L  R
Sbjct: 682 RVVAESVETDGQAAHLRSLGCDVGQGWFMAPPLPAREVEQMLDRR 726


>gi|294500576|ref|YP_003564276.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus megaterium QM B1551]
 gi|294350513|gb|ADE70842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium QM B1551]
          Length = 571

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/558 (25%), Positives = 259/558 (46%), Gaps = 20/558 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            LA+  S  IV   D              I       + G     +   H +    F+ +
Sbjct: 21  ELALNESS-IVAITDSRGFINHVNDKFCEISKYERHELLGQDHRIINSKHHSSL-FFKEL 78

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +    +      E + +A D  ++W+   I P  +  G   +Y+ I NDIT++K   E
Sbjct: 79  WSTIRSGK--VWHGEIKNKAKDGSYYWVDTTIVPFLDERGKPYQYVSIRNDITKRKAYEE 136

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A+ D LT +PNR            L   +      ++ +D+D++K IND LG   
Sbjct: 137 KIKQMAYYDPLTNLPNRYW--LNKQLKKLLLDRESPELLAILFLDLDRFKSINDTLGHHH 194

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +  R+ + +   D ++R  G+ F ++L S  N  +I +    + K +++P  +
Sbjct: 195 GDVLLRRVAERLRKCIPSSDFISRHGGDEFILVLHSLKNVEEIEEMTEQIVKEMSLPFYI 254

Query: 648 LEREITVTASIGFASWT----------SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++  + S+G + ++           +      ++K A++AMY AK  G N  E    
Sbjct: 255 DGDKVLTSTSVGISLFSKECQQHIIPKDADELIDRLIKQADIAMYVAKRNGRNTYEMSSS 314

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +      + ++ +L  A+E  E  LVY P+I L    ++G EALI+WD  K+G +  +
Sbjct: 315 SSNERIIKTISMENELKYALERHEFQLVYQPLIDLKTSGVIGAEALIRWDSAKFGTVYPN 374

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ I EE+ +I  +  ++LE   + + +W +  +     I +N++   L  +     M+
Sbjct: 375 EFLPILEEVGLIVPVGKWVLEEACKQMKAWTELNSKAS-KIGVNVSPIQLKSSRFVAEME 433

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ KT   P  ++L  +ESV + N + S+ +L RLR +G+ + +DDFGT  S LSYL +
Sbjct: 434 QILKKTDLEPHFLELEITESV-IQNSQESKKVLNRLRSLGVKVAMDDFGTCYSSLSYLKH 492

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +P +T+K + S +    E    ++ +II M K +   + A+ I  E  ++ +T  GC   
Sbjct: 493 LPINTLKIDKSFIDELDEVGKVLVETIIQMGKKLNFDLTAEGIENEEQLQFVTEQGCHIG 552

Query: 936 QDSHVASPLGFNSILKLL 953
           Q      PL    + +LL
Sbjct: 553 QGYLFDKPLSPEEMSRLL 570


>gi|226939602|ref|YP_002794675.1| hypothetical protein LHK_00673 [Laribacter hongkongensis HLHK9]
 gi|226714528|gb|ACO73666.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 910

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 141/562 (25%), Positives = 257/562 (45%), Gaps = 10/562 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q    +    +     S + +   D     V        + G   G + G    W+   
Sbjct: 339 KQAREDELRVAAQVYEQSREGILITDAQHRIVMLNSRCCELTGYTQGEVVGTTPEWMFSE 398

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  F   L   +  + G    E  +R  + Q     + +R +    G    ++ + 
Sbjct: 399 SQVSTPGFVE-LCRHLDEQGG-WAGELLLRQRNGQLFLAWLTLRTVRL--GTSTYHVCMF 454

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+++++ +   I   A+ D LTG+PNR    DR    L     D      ++++DID +
Sbjct: 455 GDLSDRQAAERRIQYLAYFDTLTGLPNRALLTDRANMALRGVEGDAAPALALLLLDIDHF 514

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG + GD +L S+ +R+   ++  D ++R  G+ F ++L    N+ + A  A  
Sbjct: 515 KHINDTLGHSTGDQLLQSVAKRLQATVREGDTVSRQGGDEFVVLLPD-ANASRAASVAQE 573

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + +     + E +I+V+ SIG A         + + K AE+AMY AK  G N +  F 
Sbjct: 574 ILRRLGFVCRIGEHDISVSVSIGIAMAPDDGTDFATLSKCAEIAMYRAKQEGRNTLRFFF 633

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                     V +   L  AVE  E+ L Y P + L   E+ G+EAL++W HP +G +S 
Sbjct: 634 PEMQERTLRHVQLTGALRGAVERGEMQLHYQPQVDLQTGELSGVEALLRWTHPLFGAVSP 693

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I  I  ++L   AR +  W      PP+ + +N++        L + +
Sbjct: 694 GEFIPLAEESGLIIPIGDWVLRTAARQLADWLRDGL-PPMVMAVNLSVLQFNLPGLAQQI 752

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++S+    P+  ++  +ES+ M  PE +   +  L  +G+ ++LDDFGT  S L+YL 
Sbjct: 753 ASILSEAGVPPALFEVELTESMAMTEPEAAIATIDELHSVGVQVSLDDFGTGYSSLAYLK 812

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +K +GS +    S  +  AI+ +I+ MA+++    +A+ +     ++ +  +G 
Sbjct: 813 RFRLDRLKIDGSFVRDADSDPEDRAIVDAIVGMAESLGLATVAEGVETSGQLEVIRALGG 872

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
           D +Q   ++ PL    ++  L+
Sbjct: 873 DAVQGYWISRPLPAAGLVAWLE 894



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 2/151 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           G  +++  L    +   + +   R+ L +  S     +WD              + G + 
Sbjct: 202 GVAILEDALDNPRWQDELLAGRRRRQLFLDQSVLAAIEWDDGFCVQEWNRAAERMFGFSR 261

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G    +   +    R      +   +  + G        +  D            +
Sbjct: 262 EEAIGQHAFF--ILPSEVRATLDREVLQSLMRQEGGWHSVNVNQTRDGALIQCEWFNTTL 319

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +SNG  L    +  DITE++   + +   A
Sbjct: 320 VDSNGKSLGVTSLVLDITEKQAREDELRVAA 350


>gi|221233629|ref|YP_002516065.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|220962801|gb|ACL94157.1| PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 694

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 136/559 (24%), Positives = 251/559 (44%), Gaps = 14/559 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               D +R ++A+     +V ++D+   +V  +     +             + L  +H 
Sbjct: 143 RAERDRQRLTMALELDDLLVREYDLRTRQVFFSGHAPDLQKY-----CTFKDDPLEIVHP 197

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            DR     ++ S           EF+++  D    W+    +     +G   + + +  D
Sbjct: 198 EDRQRCADLVASRKLGEARVF--EFKLKRDDGIETWVRSVGKVFIGQDGQPEKLVNLFKD 255

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++++  E I   AF+D LTG+PNR  F  R    +  ++        +++ID+D +K 
Sbjct: 256 ITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVS-ASETLGEMFGLIMIDVDHFKD 314

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L  L   +    +  D +ARL G+ F +IL   +    +     A++
Sbjct: 315 INDTLGHDAGDALLKRLAGMLQHAFRTGDTVARLGGDEFAVILRGLHGEADMTRPIEALQ 374

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  PI    R  T +ASIG A         + M+KNA++A+Y AK  G N    F  S
Sbjct: 375 DLLRRPIQHGGRSFTASASIGAALHGDLDADPAHMIKNADIALYRAKEAGRNRSIVFEPS 434

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   ++   D+  A+  +E  L Y P++ + +  + G EAL++W HP+ G ++ + 
Sbjct: 435 MRSEVERRLELLRDVRAALTENEFTLYYQPVVDIRENRVAGFEALMRWVHPEQGVLTPAR 494

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           FM   E+  +   +     E   + + +W D+       + +NI+S       L E +Q 
Sbjct: 495 FMAAFEDQDLSLKLGDVAFETALKQMRAWLDEGVEFG-RVAVNISSAQFRSGRLAEEIQE 553

Query: 817 LISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +++      R+ +  +E+V MG   +     + RL + G+ + LDDFGT  + L+ L  
Sbjct: 554 RLARWSVPCERLTIEVTENVYMGWGSDLVSETVRRLHEAGVMIALDDFGTGYASLANLRQ 613

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P D +K + S +     +  AI++++I +  ++   ++A+ +     ++ L R GCD I
Sbjct: 614 FPIDRLKIDKSFVQN--GEDEAIVKAVITLGTSMGMKVVAEGVEDAEQLEALARYGCDQI 671

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  H   P+    +   LK
Sbjct: 672 QGYHFGRPMPAGEVAGFLK 690


>gi|114563838|ref|YP_751351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114335131|gb|ABI72513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1451

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 130/563 (23%), Positives = 257/563 (45%), Gaps = 19/563 (3%)

Query: 400  IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            I    E+  L   A+    + ++  +     V        +           I ++    
Sbjct: 886  IKQAEEQLRLFARAIENISEGMFILNEKYQFVEVNNACCELAASTKEKFANEILHFSR-- 943

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +     ++   + + +  + GR   E       + +  M + I  + N  G+   Y+G+ 
Sbjct: 944  YP---ASYSEQIRNLLKQQ-GRWSGEIEASKGKDSYFLMELTIDAIYNEQGETSHYVGVF 999

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DIT +K+  E +      D LTG+PNR S    L+ ++       ++  T+MV+D+D +
Sbjct: 1000 SDITRRKQQEEELRKLTNNDLLTGLPNRSSLQVTLSNLVKK-----DVHHTLMVLDLDNF 1054

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K+IND LG  +GDD+L+ +  RI   +     L RL G+ F +++    +    A  A  
Sbjct: 1055 KRINDSLGHQIGDDLLIGVAERIKLAIPKHASLYRLGGDEFALLVDQHPDIGSCAAIATQ 1114

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +   +     L    + +  SIG   +   +     +L+ A++AMYHAK  GGN  + + 
Sbjct: 1115 VINCLKPAFTLNNDSLVLGISIGIVLYPEDEQNEQALLRKADIAMYHAKSGGGNRYQFYS 1174

Query: 697  V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +     ++ I+  +  A+++    + Y P I +  + + G+EAL++ +HPK G I  
Sbjct: 1175 ESLNQNALRQLEIESLIREALKDDLFEVYYQPKIDVKKDRLNGMEALVRLNHPKLGLIGP 1234

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +EF+ +AEE  +I  I   +L +       W +        + +N++S+     +L + +
Sbjct: 1235 NEFIPLAEENGLIVEIGDVVLRKACFAAQKWLELGLFSG-RVAVNLSSRQFALPDLQQRI 1293

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++++  T      ++L  +E  V+ +PE++  ++ +L K+G+SL LDDFGT  S LSYL 
Sbjct: 1294 ESILRLTKLPAKHLELEITEGTVIKDPEQAIKVMQQLAKMGVSLALDDFGTGYSSLSYLK 1353

Query: 875  YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P + +K + + +    +      ++ SII +A N+  T++ + +     +  L  + C
Sbjct: 1354 RFPINCLKIDKTFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEQTAQLNILKALNC 1413

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
            + IQ    + P+       +L  
Sbjct: 1414 EEIQGYIYSKPIREADFELMLTA 1436



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 2/159 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L ++ +     + ++      + I    ER  L++ GSGD +WDWDI   ++  +    +
Sbjct: 741 LFILSLIILSFKVIIRRREIQKQIAQSEERLKLSLWGSGDEMWDWDIESGKIYRSNIWGS 800

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L            +    IH  DRD     L+          +  +RV+A + Q+ W++
Sbjct: 801 -LDFPQDGRRSGNPDEESNIHPLDRDRVTRALNDHFNAITDHFEIAYRVKARNQQWVWIL 859

Query: 497 IRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R + +  +     LR  G   DI   K++ E +   A 
Sbjct: 860 DRAKIVERDQKDVPLRMTGTIKDINNIKQAEEQLRLFAR 898


>gi|187926137|ref|YP_001892482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ralstonia pickettii 12J]
 gi|241665625|ref|YP_002983984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ralstonia pickettii 12D]
 gi|187727891|gb|ACD29055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ralstonia pickettii 12J]
 gi|240867652|gb|ACS65312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ralstonia pickettii 12D]
          Length = 1183

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 137/584 (23%), Positives = 258/584 (44%), Gaps = 24/584 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437
            +  F  +Q +       + +          V      +   D  +     V   P    +
Sbjct: 609  VALFGTMQDITDRRESDEQLRL----LRRVVESVPSGITVADAQQPDFPIVYVNPGFERM 664

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWM 495
             G  +  + G    +L           +  L+      R   +    +R    D      
Sbjct: 665  TGYRAEEILGRNARFLHSSEPG-----QPALNEVRTALRDESEIRVLLRNFRKDGHAFLN 719

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               + P+ ++ G +  Y+GI +D+TEQ+ +   +  +A  D+LTG+PNR    DR+   +
Sbjct: 720  NFLLSPVRDAKGAVTHYVGIQDDVTEQEMTRTRLAQHATIDSLTGLPNRTLLADRVQQSV 779

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +++A     R  V +++ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 780  EMAAR-QRSRFYVALVNIDRFKVVNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGD 838

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++    +      F        A P+ +   E+ VTASIG A + +    +  +++
Sbjct: 839  VFALVISHAGSRGVDFGF-----DLFAEPVRVEGHEVFVTASIGVAEYPAHGADADSLIR 893

Query: 676  NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +AE+AMY+AK  G N +E F        S R+ ++  +   +E  +  L+Y P I     
Sbjct: 894  HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRATLEQGQFRLLYQPQIDTKTG 953

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             + GLEALI+W HP  G +  + F+ +AEE  +I  I  ++L   AR    W  +     
Sbjct: 954  RVCGLEALIRWIHPTRGLLPPAAFIPVAEESGLIVEIGNWVLTEAARQRAEWHKRGLADD 1013

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + + +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 1014 LTLAVNVSPLQFKRGTVLPTLLKLQRQYGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 1073

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 1074 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 1133

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + A+ +        L    CD +Q  + + PL   ++  LL+ 
Sbjct: 1134 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 1177



 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 11/185 (5%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSG 415
           A       D        G     + +       + A             ER       + 
Sbjct: 318 AARHYATGDFSARVPEHGSSRDELSLLERTFNEMRAAIQRHDATVHRLTERFQRVARATN 377

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLAS----------GSMHGPIRNWLPYIHINDRDNFR 465
           D ++DWDI          +  +LG  +          G        +  ++H +D D F 
Sbjct: 378 DWIFDWDIATGESWANASLHRLLGSDALLGQGDDDGTGGGTSRTLTFQQFVHPDDVDAFA 437

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L + +   R   Q+  RV  A+     + IR     + +G  +R +G   DI+++   
Sbjct: 438 HELRTVLNSDRDSWQHVCRVIDANRATRTVEIRASLYRDQDGRAVRMVGGVTDISQRSAI 497

Query: 526 LEGIL 530
            + + 
Sbjct: 498 EQELR 502



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q + S      +A   +    W WD++RD  T +  +  + G+  G+       
Sbjct: 493 QRSAIEQELRSSEANLRVAEQIALLGSWRWDVLRDSTTWSSGMYVLTGMPPGA-PPAFAQ 551

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 552 QAQFFTADSYNRLREAASRAVTEGEA-YSLELEMIRRDGEHRWVLSRGNIERNDRDEVVA 610

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DIT++++S E +   
Sbjct: 611 LFGTMQDITDRRESDEQLRLL 631


>gi|229590892|ref|YP_002873011.1| putative signaling-like protein [Pseudomonas fluorescens SBW25]
 gi|229362758|emb|CAY49668.1| putative signalling-related protein [Pseudomonas fluorescens SBW25]
          Length = 857

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 146/564 (25%), Positives = 273/564 (48%), Gaps = 20/564 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              + +   R    V  S D VW+ D        +     + GL   +  G   N L   
Sbjct: 305 QNALATSEARFRDVVEASSDWVWEIDAGWRFTYLSERFEGVTGLTRYAWIGATMNDLL-- 362

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              + ++           RR  +  + R   A  Q     +  R M         + G A
Sbjct: 363 ---ETESGLLSQWLSAPGRRPDISVQCRYVDAAGQERTTRLSAREMPCG-----GFRGTA 414

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE+ ++   I   +  D LTG+PNR      L   L    + +     ++ +D+D++
Sbjct: 415 TDVTEEVEARRRIEFLSQHDALTGLPNRTRLQAFLDGKLKALPSTEQP-LVMLSLDLDRF 473

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND+LG A GD VL  ++ R+ + ++  D++AR+ G+ F +IL       ++      
Sbjct: 474 KPVNDLLGHAAGDRVLNEVSARLADCVRHGDLVARVGGDEFVLILTDAGTQDEVETLCKR 533

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           + +SI   I + E+E+ ++ASIG A   +    ++E+L+ A++A+Y AK  G N    + 
Sbjct: 534 LIESIERTIRIDEQEVFISASIGIAIAPNDAREAAELLRYADIALYEAKAAGRNTWRFYS 593

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +++   +R  ++ DL  A++++EL L + P  R+ D ++VG EAL++W HP  G I+ 
Sbjct: 594 GDMNARIIERRRLESDLRYAIKHAELRLHFQPRYRIADGQMVGAEALVRWQHPVRGLIAP 653

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE  +I A++ ++LE        W +     P+F+ +N++  +     L E  
Sbjct: 654 DTFIPIAEESGLILALSDWVLETACVCAAQWPE-----PLFVSVNLSPTEFKRGNLVERT 708

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q  +  +   P+R++L  +ESV++ +   +  ++  L+++G+ + +DDFGT  S LSYL 
Sbjct: 709 QQALKSSGIDPARVELEITESVMLEDATGALEVMRTLKQLGVRIAMDDFGTGYSSLSYLR 768

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +T    ++   AI+++I+ + + +  T+ A+ I     +  L  + C
Sbjct: 769 DFPFDGLKIDRSFLTRLEESDDDKAIIQAIVGLGRTLALTVTAEGIETAEHLALLKAVAC 828

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           +  Q   ++ PL   ++  LL   
Sbjct: 829 EEGQGYFLSRPLDIEALNSLLDVH 852


>gi|283852440|ref|ZP_06369709.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
 gi|283572178|gb|EFC20169.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
          Length = 814

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/553 (25%), Positives = 263/553 (47%), Gaps = 21/553 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGL-----ASGSMHGPIRNWLPYIHINDRDNFR 465
           +  S +  +  D              + GL         +   + + L      D     
Sbjct: 260 LSLSAEGFFVIDADGRLRLVNAACTRVFGLCSVPEPGLPLEAALPSELATSLARDASRVI 319

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
              +         +               +++ + PM  +    +    G+ +DIT++K 
Sbjct: 320 AWNEPVKKEMTTTIC---------GTDKTLLLSLFPMGIDEASRLAG--GLVSDITDRKH 368

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   AF D LTG+PNR   LDR+   ++ S   +N +  V+ +D+D++K IND LG
Sbjct: 369 LENQLAHMAFHDPLTGLPNRSLCLDRIRQAIERSKRRENYQYAVIFLDLDRFKVINDSLG 428

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L  ++RR+ + ++  D +ARL G+ F ++L    ++ +I      +R +I+  
Sbjct: 429 HHMGDRLLEGVSRRLRDCVRGLDTVARLGGDEFVVLLEETGSNREIIRIVKRIRTAISDI 488

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702
             L + +I VT S+G     +      E+L+NA +A++ AK  G N  + F         
Sbjct: 489 FVLCDHDIHVTCSMGIVISPALYDKPEELLRNANIALHRAKGEGRNRFKVFNTRMLEDAI 548

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + ++ DL LA++  E +L Y PI+ L D  + G EAL++W  P  G  S  EF+ +AE
Sbjct: 549 RLMDLENDLRLALKRGEFFLDYQPILALRDRRLTGFEALVRWRRPGKGVASPMEFIPVAE 608

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKT 821
           +  +I  + L++L    + + +W+ +      + + +N+++K L    + E ++ ++  T
Sbjct: 609 DTGLIVPLGLWVLGEACQTMAAWQKRFPGAEHLSMSVNLSAKQLAQPTMVEEVERILRAT 668

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +KL  +ESV+M NPE S L L RL+++G+ L++DDFGT  S LSYL   P DT+
Sbjct: 669 GLDPRTLKLEITESVIMDNPEVSILRLKRLKELGVRLSVDDFGTGYSSLSYLQRFPIDTL 728

Query: 882 KFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + + ++     +   I+ +++ +A ++   ++A+ +  E     L    C+  Q    
Sbjct: 729 KVDRAFVSDIEASENRKIVGAVVALAHSLGLDVVAEGVELETQSDVLEGFNCEAGQGFLF 788

Query: 941 ASPLGFNSILKLL 953
           + P+    + ++L
Sbjct: 789 SRPVCGEDVERML 801


>gi|160900354|ref|YP_001565936.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160365938|gb|ABX37551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 617

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/609 (23%), Positives = 260/609 (42%), Gaps = 53/609 (8%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           +   +  +      Q   +  +G  +      R  V      A I G A       I + 
Sbjct: 16  SSMMAASLQRSLREQQALLDNAGVGIVFIR-QRVIVRCNQCYADIFGYAGEHALVGINS- 73

Query: 453 LPYIHINDRDNFRTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             ++H + RD  R++              + + R+R  D    W  +  R ++  +    
Sbjct: 74  -EHLHPS-RDELRSLGREAYRTLSAGLSFRTQRRLRRKDGSLFWGELTGRLINPGDAR-E 130

Query: 511 RYIGIANDITEQ---------------------------------------KKSLEGILC 531
             I I +DI ++                                       K   E I  
Sbjct: 131 GSIWIVSDIDDRLRAQQALSQAHELLEQQVRDRTRELSATVENLHREIADRKLDQERIYW 190

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LTG+PNR    +R    ++L+  +D     VM +D+D +K +ND LG  VGD +
Sbjct: 191 MAHYDALTGLPNRTLLAERSARAIELAKAND-TPLAVMFLDLDHFKHVNDSLGHRVGDAL 249

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           LV + RR+  +++  D +AR+ G+ F ++L    N+   A  A  ++++      +   E
Sbjct: 250 LVEIARRLRAVVRDRDTVARIGGDEFVLLLPG-ANAQGAARVAGKLQEASRQAYQIDRHE 308

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKE 709
           +T+  SIG A +         + + A+ AMYHAK  G N    F           + ++ 
Sbjct: 309 LTIAPSIGIALYPRDGHDIDSLTQAADAAMYHAKQAGRNTYRFFTPQMQAQSLRALQLEN 368

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+E ++LYL Y P I L    +  +EAL++W+HP+ G++S +EF+ +AE+   I  
Sbjct: 369 ALRRALERNQLYLHYQPQITLSTGRVRSVEALLRWEHPELGSVSPAEFIPVAEDSGQILQ 428

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    + +  WR+      + + +N+++      +L E +  ++  +      ++
Sbjct: 429 IGEWVLRSAMQQLQVWRNAGL-CDLKVAVNLSAIQFHQQQLPEIINRILLDSDLPADSLE 487

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E V + +P ++   + RLR+ G+ L +DDFGT  S LS L       +K + S + 
Sbjct: 488 LELTEGVAIHDPRQATATMDRLREHGVRLAMDDFGTGYSSLSQLKRFQIYKLKIDQSFIQ 547

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI+ +II MA+ +     A+ +  E  ++ L   GCD  Q  H + PL   
Sbjct: 548 DLDHDSNDRAIVSAIIRMAQALGMQTTAEGVETEAQLEFLREQGCDEAQGYHFSRPLAPE 607

Query: 948 SILKLLKER 956
           ++   L+ +
Sbjct: 608 ALESFLRSQ 616


>gi|144900567|emb|CAM77431.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 904

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/582 (22%), Positives = 252/582 (43%), Gaps = 23/582 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q +         I     R       S D +   D           +  +LG  +  + G
Sbjct: 329 QAISDREQAFSDIQISEARLRTIFDASPDALLISDAQGAITMANSRVEEVLGYMAEDLIG 388

Query: 448 PIRNWL-----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                L        H   R  +    D  +      ++        D     + I +  +
Sbjct: 389 QSIEALVPKSVNSAHSEHRSAYIEAPDRRLMLGGRTIKA----LRKDGSECEVEINLSRV 444

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G  +       DI+E++++   I   +F D+LTG+PNR   +DR+   +  S  D 
Sbjct: 445 DTDQG--VMIASALRDISERRRAEGKIAELSFFDHLTGLPNRTLLMDRMKLAMTASYRDG 502

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID+D +K +N+ LG  +GD +L  +  R+   ++  D +ARL G+ F ++L+
Sbjct: 503 K-HCALLFIDLDNFKALNETLGHEIGDQLLRDIAPRLVASVREDDTVARLGGDEFLVLLV 561

Query: 623 SENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
               +      ++    + + ++++ P +L  +    T SIG   +    + + ++LK +
Sbjct: 562 DLARTESEAANQVEAIGLKIIEALSQPYSLNNQHYVCTPSIGATLFFGHVV-ADDLLKQS 620

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY AK  GG  +  F      +      I+ DL   +   +  L Y P I   +  +
Sbjct: 621 DLAMYKAKAEGGASIHFFDPKMEEAVIKRAKIEADLRQGLIKKQFLLHYQPQI-FSNGRM 679

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL++W HP  G +  S+F+ +AEE  +I  +  ++LE   + +  W  +  +  + 
Sbjct: 680 TGVEALVRWQHPVRGLVPPSDFIPLAEETGLILQLGNWVLEAACKQLAEWATRPELADLT 739

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ +     E  + +Q +I  T  +P R+KL  +ES++  N +     +  L+  G
Sbjct: 740 VAVNVSVQQFHQPEFVDHIQEVIRVTGANPERLKLELTESMLAENVQDIIKKMFALKADG 799

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913
           I  +LDDFGT  S LSYL  +P D +K + S +    +      I ++I+ +A+++  ++
Sbjct: 800 IGFSLDDFGTGYSSLSYLKQLPLDQLKIDQSFVRDVLTDPSDATIAKTIVNLAQSLGLSV 859

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           IA+ +  E     L   GC   Q    + PL      +  + 
Sbjct: 860 IAEGVETEAQRNFLETSGCHSCQGYFFSRPLPIEEFEEYARR 901


>gi|294141672|ref|YP_003557650.1| sensory box protein [Shewanella violacea DSS12]
 gi|293328141|dbj|BAJ02872.1| sensory box protein [Shewanella violacea DSS12]
          Length = 1438

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/563 (23%), Positives = 260/563 (46%), Gaps = 19/563 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        +         G   N+   ++ 
Sbjct: 875  HAEEQLKLFERAIANISEGMFILDSGFKFVEVNEACCELCLKPRDKFIGEQFNF--DLYP 932

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   ++   + + +  + GR   +      D     M + +  + +  G +  Y+G+ +D
Sbjct: 933  D---SYSAQIRTILNQQ-GRWSNDVESAKGDGSSFLMELTVDAIYDELGQLSHYVGVFSD 988

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LT +PNR S +  L  ++       +   T+MV+D+D +KK
Sbjct: 989  ISRRKQQEEELRKLTNNDLLTNLPNRSSLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1043

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++L+ +  RI   + +   + RL G+ F I++    +    A  A  + 
Sbjct: 1044 INDSLGHQVGDELLIKVAGRIEAAVPYHTSIYRLGGDEFAILVDDNPDIGSSAIIANNVI 1103

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++   P  L   ++ V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1104 EAFVTPFELTLDKVVVGMSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1163

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R+    ++ +  +   +      + Y   I L   ++ G+EAL++ +HP+ G I  ++
Sbjct: 1164 LNRNAIRQLEVENLIRQGIREDLFEVYYQAKINLKSGKMAGMEALVRLNHPEHGLIPPND 1223

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L++       WR Q       + +N++S      +L + +++
Sbjct: 1224 FIPLAEENGLIVEIGDIVLKKACFATQKWRSQGIFNG-RVAVNLSSYQFALPDLQQRIES 1282

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1283 ILRLTQLPAANLELEITEGTVIKEPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1342

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++A+ +     +  L  + C+ 
Sbjct: 1343 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVAEGVEDASQLSILKALNCED 1402

Query: 935  IQDSHVASPLGFNSILKLLKERF 957
            IQ    + P+      KLL + F
Sbjct: 1403 IQGFIFSKPVTEAEFTKLLNKEF 1425



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 64/167 (38%), Gaps = 3/167 (1%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +   A     +L  ++I   +++ +L        I    ER  L++ GSGD +WDWD
Sbjct: 715 PWWLSPQAKFIYFML-SLIISGLIVKAILRRREVQNQIAKSEERLKLSLWGSGDEMWDWD 773

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I   ++  +    + L                 IH  D++   T L+     +    +  
Sbjct: 774 IETGQIYRSNIWGS-LEFPRDGQRSGEAGEKSNIHPMDQERVSTALNDHFDGKSDHFEAA 832

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
           +RV+     + W++ R + +  +   + LR  G   +I   K + E 
Sbjct: 833 YRVKGKSGDWVWILDRAKIVERDEKDNPLRMTGTIKNINNFKHAEEQ 879


>gi|309779069|ref|ZP_07673836.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308922134|gb|EFP67764.1| sensory box/GGDEF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 957

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 137/584 (23%), Positives = 258/584 (44%), Gaps = 24/584 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATI 437
           +  F  +Q +       + +          V      +   D  +     V   P    +
Sbjct: 383 IALFGTMQDITERRESDEQLRL----LRRVVESVPSGITVADAQQPDLPIVYVNPGFERM 438

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWM 495
            G  +  + G    +L           +  L+      R   +    +R    D      
Sbjct: 439 TGYRAEEVLGRNARFLHSSEPG-----QPALNEVRTALRDESEIRVLLRNFRKDGHAFLN 493

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              + P+ ++ G +  Y+GI +D+TEQ+ +   +  +A  D LTG+PNR    DR+   +
Sbjct: 494 NFLLSPVRDAKGAVTHYVGIQDDVTEQEMTRTRLAQHATIDPLTGLPNRTLLADRVQQSV 553

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           +++A     R  V +++ID++K +ND LG  +GD+VL  +  R+ +     D +AR  G+
Sbjct: 554 EMAAR-QRSRFYVALVNIDRFKVVNDSLGHLLGDEVLRRVAERLRDAADTVDTVARFGGD 612

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F +++    +      F        A P+ +   E+ VTASIG A + +    +  +++
Sbjct: 613 VFALVISHAGSRGVDFGF-----DLFAEPVRVEGHEVFVTASIGVAEYPAHGADADSLIR 667

Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +AE+AMY+AK  G N +E F        S R+ ++  +  A+E  +  L+Y P I     
Sbjct: 668 HAEMAMYYAKQNGRNRLEFFAPEMDIGVSYRLNLEHQIRAALEQGQFRLLYQPQIDTQTG 727

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + GLEALI+W HP  G +  + F+ +AEE  +I  I  ++L   A+    W  +     
Sbjct: 728 RVCGLEALIRWIHPTRGLLPPAAFIPVAEESGLIVEIGNWVLTEAAQQRAEWHKRGLADD 787

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++        +   +  L  +       ++L  +ES++M   ER+   L  +R+
Sbjct: 788 LTLAVNVSPLQFKRGTVLPTLLKLQRQYGLGSGFLELEVTESMLMEGTERTIEDLTAIRQ 847

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G+ + +DDFGT  S L+YL  +P D +K + + +          AI  +++ +A N+  
Sbjct: 848 LGVRIAIDDFGTGYSSLAYLKRLPIDLIKIDRAFVKDIDRDSNDAAICTTVVVLAHNLGV 907

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + A+ +        L    CD +Q  + + PL   ++  LL+ 
Sbjct: 908 KVCAEGVEDAAQSAFLASHQCDVLQGYYFSEPLLPEAVTALLER 951



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 11/185 (5%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSG 415
           A       D     +  G     + +       + A             ER       + 
Sbjct: 92  AARHYATGDFSARVVEHGASRDELSLLERTFNEMRAAIQRHDATVHRLTERFQRVARATN 151

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLAS----------GSMHGPIRNWLPYIHINDRDNFR 465
           D ++DWDI          +  +LG  +          G        +  ++H +D D F 
Sbjct: 152 DWIFDWDIATGESWANASLHRLLGSDALLGPGDDDGAGGGTSRTLTFQQFVHPDDVDAFA 211

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L + +   R   Q+  RV  A+     + IR     + +G  +R +G   DI+++   
Sbjct: 212 RELRAVLNSNRDSWQHVCRVIDANRATRTVEIRASLYRDQDGRAVRMVGGVTDISQRSAI 271

Query: 526 LEGIL 530
            + + 
Sbjct: 272 EQELR 276



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q + S      +A   +    W WD++RD  T +  +  + G+  G+       
Sbjct: 267 QRSAIEQELRSSEANLRVAEQIALLGSWRWDVLRDSTTWSSGMYVLTGVPPGA-PPAFAQ 325

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +   +  +  R      V         E  +   D +  W++ R     N   +++ 
Sbjct: 326 QAQFFTADSYNRLRDAASRAVTE-GEPYSLELEMIRRDGEHRWVLSRGNIERNERDEVIA 384

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G   DITE+++S E +   
Sbjct: 385 LFGTMQDITERRESDEQLRLL 405


>gi|171059969|ref|YP_001792318.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777414|gb|ACB35553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 810

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 249/575 (43%), Gaps = 18/575 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +  L        + +    Q   +      V  ++        +       G   G M G
Sbjct: 233 RLALQMDKMRADLKTSFAEQRAILTNIELGVI-FERGGLIQLASRQAERSFGHPPGFMSG 291

Query: 448 PIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                +  I+  D           + +    GR + E  +   D    W  +R+R + + 
Sbjct: 292 LP---ILAIYPEDARAGIASARAMAAIATGDGRHEEELMLHRRDGSQFWAHLRVRQL-DP 347

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                  I +  DI+ +K   + +   AF D LT +PNR+   DRL   L  SA    + 
Sbjct: 348 AQPQAGCIWVIEDISARKAVEDEVNRLAFYDPLTQLPNRRLLRDRLAQALAASARS-GMH 406

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-- 623
             ++ ID+D +K +ND LG A GD +L  + +R+   ++  D +ARL G+ F +I+    
Sbjct: 407 GALIFIDLDNFKSLNDTLGHARGDQLLKLVGQRLTHCVRESDTVARLGGDEFVVIVQDLG 466

Query: 624 ---ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +  + +       +  ++  P  L       T SIG   +   + +  ++LK A++A
Sbjct: 467 ARLDECATQAEGVGEKILDALNQPYPLDGHVRHSTPSIGITLFADDRDSVDDLLKEADMA 526

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N +  F             ++ED+  ++  S   L Y P + +    I G 
Sbjct: 527 MYQAKTAGRNTLRFFDADMQAMLVQRAALEEDMRESMRLSHFLLHYQPQV-VGSGRITGA 585

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W HP  G +  +EF+ +AE+  +I A+  ++LE   + +  W  Q +M  + + +
Sbjct: 586 EVLLRWPHPLRGLVPPAEFIPLAEDTNLITALGHWVLETACKTLADWSAQDDMKHLSVSV 645

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++++          + +++ +T   P  +KL  +ES+++ + E     +  L+  G+  
Sbjct: 646 NVSARQFRQPHFVAEVMSILERTGADPHLLKLELTESLLVEDVEDIVAKMSALKSRGVGF 705

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFGT  S L++L  +P D +K + S +         +AI R ++ +A ++  T+IA+
Sbjct: 706 SLDDFGTGYSSLAHLKRLPLDQLKIDQSFVRDILTDPNDLAIGRMVVALADSLGLTVIAE 765

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +      + L ++GCD  Q    + PL       
Sbjct: 766 GVELAAQRELLAQIGCDAYQGYLFSRPLPREPFEA 800


>gi|260771498|ref|ZP_05880422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Vibrio
            furnissii CIP 102972]
 gi|260613463|gb|EEX38658.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Vibrio
            furnissii CIP 102972]
          Length = 1097

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/565 (24%), Positives = 250/565 (44%), Gaps = 16/565 (2%)

Query: 396  FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +     +    V G  D +   D     +T       I G       G   + L  
Sbjct: 536  AEKALSDKSRQMEAVVEGLLDGIITIDGRGKILTFNQAAQEIFGYTEDETLGKNISMLMG 595

Query: 456  I-HINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H    D++ +  ++  V    GR++ E      D     + +         G++  +I
Sbjct: 596  SPHREHHDSYLSNYIERGVSEITGRIR-ELEALRKDGSMFPIEL-GIVEVQMAGEV-NFI 652

Query: 514  GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            G+  DITE+K+    I   AF D LT +PNR+  LDRLT  ++ S    N    +  +D+
Sbjct: 653  GVVRDITERKQRENEIHQLAFYDPLTLLPNRRLLLDRLTEAINHSVRTRNFS-ALFFLDL 711

Query: 574  DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----L 628
            D +K +ND  G   GD +L  +  R+   ++  D +ARL G+ F II    ++       
Sbjct: 712  DNFKNLNDSAGHNKGDLLLGQVAERLVNSVRQGDTVARLGGDEFVIIASDLSHEPTLAAN 771

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +    A  +  ++    NL       +ASIG   + S  +   ++LK A++AMY AK+ G
Sbjct: 772  QAERLAQKIVSNLTREYNLDGLTYNSSASIGVTLFNSENLPKEDLLKQADMAMYKAKYAG 831

Query: 689  GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             N V+ F      S      I  DL  A+++ +  L Y   +    ++ +G+E L++W H
Sbjct: 832  RNGVQFFDPQMQVSVSSRASIVSDLYSAIQSQQFVLFYQKQVNH-LKQCIGVEVLLRWIH 890

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            P+ G +S  +F+ +AEE  +I  I  ++LE     +  W  ++    + I +NI+     
Sbjct: 891  PEKGMVSPLQFIPLAEETGLIVPIGEWVLEEACATLAKWSLESEKQHLSIAVNISVVQFS 950

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +   + +   +  +  +P  +KL  +E+++  N    +  +  L++ G++ ++DDFGT 
Sbjct: 951  KDNFVQTVLNALKTSGANPQLLKLEITETLLANNIPDVKAKMKELQQHGVTFSIDDFGTG 1010

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S LSYL  +P + +K +   +     +    AI +++I +A +IE  +IA+ +  E   
Sbjct: 1011 YSSLSYLKQLPINQLKIDQGFVRDIINSSNDRAIAQAVITLADSIELQVIAEGVETEAQR 1070

Query: 925  KELTRMGCDYIQDSHVASPLGFNSI 949
              L  MGC   Q      P     +
Sbjct: 1071 ALLQSMGCHTYQGYLYGKPCRIEEL 1095



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPY 455
            + I +        +  +    W ++I    +      A +LG     +    R  W   
Sbjct: 406 EELIRNSQNLLKAVIDANNIGTWHFNIQTGELIINDKWAALLGYTLSELLPANRYTWERL 465

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIG 514
            H +D     TIL+  V       +   R++  + ++ W+  R R      +G  L  +G
Sbjct: 466 THPDDLAYCTTILEKHVSGLIPIYEANLRMKHKNGEWIWINTRGRISSRTYDGKALWLLG 525

Query: 515 IANDITEQ 522
              DI +Q
Sbjct: 526 THFDINDQ 533



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 4/181 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  +         + ++                I    +  V+          S+  R 
Sbjct: 230 LVECLKQAFCNNDVIHHNYTFEKSNQSFEARYKKIDDNEVLVVIRNTSAQVEAQSEIRRL 289

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR-T 466
           S     + + V   D+    +      + + G +   M G        +   D D     
Sbjct: 290 SEVARQTTNGVVITDVKGRVIWINEAFSFLTGYSIEEMQGKKPG--ELLQGEDTDPATVA 347

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I+   +  + G    +    +     +W+ I   P+ + +G +  YI I  DIT++K+  
Sbjct: 348 IMRDALAQQNG-FNVDVVNYSKAQNSYWVRIACNPLFSESGSLSGYIAIETDITKEKQDE 406

Query: 527 E 527
           E
Sbjct: 407 E 407


>gi|302879088|ref|YP_003847652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302581877|gb|ADL55888.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1138

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 154/577 (26%), Positives = 271/577 (46%), Gaps = 18/577 (3%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM-HGPI 449
                 ++ I     +  +    + D V   D+             + G   +  +     
Sbjct: 559  ERKKSAEAIERSEAKLHILFDSNSDAVLMLDMQG-FFDCNKAALRLFGCATTEELCKHHP 617

Query: 450  RNWLPYIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNG 507
             +  P    N  D+     +      R G  Q+E+  +  D  Q     + +  M   +G
Sbjct: 618  ADMSPATQPNGIDSLTLANEYIATATRDGNAQFEWLHKRMDSGQSFPADVLLSSMK-LDG 676

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             ++       DITE+KKS   I+  AF D LTG+PNR+  +DRL   L  +  +D     
Sbjct: 677  RVV-LQATVRDITERKKSESEIVRLAFYDPLTGLPNRRLLMDRLQHALTSNLRNDK-HGA 734

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++ ID+D +K +ND  G AVGD +LV + +R+   ++  D +ARL G+ F ++L + ++ 
Sbjct: 735  ILFIDLDNFKSLNDTKGHAVGDLLLVEVAQRLKGCVREEDTVARLGGDEFVVLLDNLSHG 794

Query: 628  LKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               A       A  + +++ +   L   E   + SIG A + +   +  E+LK A+ AMY
Sbjct: 795  HDNAGAHTKRVAEKILQALNLSYMLQGYEYHSSPSIGVALFCADASSPDELLKRADSAMY 854

Query: 683  HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             +K  G N V  +   +      R  ++  L  A+E  +L L Y   +   D + VG E 
Sbjct: 855  QSKAAGRNTVRFYDERTQALLLARAELEHALHHALEQQQLMLYYQVQVN-ADYQPVGAEV 913

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++W HP  G IS ++F+ +AEE  MI  I  ++LE+    +  W        + + +N+
Sbjct: 914  LLRWFHPVLGMISPAQFIPLAEESGMIIPIGYWVLEQACDQLKRWASDVFKCDLVLAVNV 973

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            + +   + +  + +QAL++ +  SP R+KL  +ES+++ + E     + +L+KIG++ ++
Sbjct: 974  SIRQFHEADFAQKVQALVTDSGISPDRLKLEITESMLVHDVENIIATMQQLKKIGLNFSM 1033

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S LS +  +P D +K + S +      E   AI+R+II MA++++  IIA+ I
Sbjct: 1034 DDFGTGYSSLSSIKRLPLDQLKIDQSFVRDIGHDEHDKAIVRTIIAMAQSMKLNIIAEGI 1093

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              E   + L   GC   Q    + P+  +    LL  
Sbjct: 1094 ETEQQRRLLALKGCTNYQGYLFSKPVPLSDFEGLLSR 1130



 Score = 78.8 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +LI     + + A+   S+ I  + + Q  A+     IV   D+             I  
Sbjct: 422 LLISRESQEKLAASEAHSKRIAEELQYQKFALDE-HAIVSVTDVTGTITDVNERFCQISQ 480

Query: 440 LASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            +   + G     L    H   +  F+ +  +    +      E   RA D   +W+ + 
Sbjct: 481 YSREELIGKNHKMLNSGWHP--KGFFKAMYRAITRGQ--VWNDEVCNRAKDGSLYWLDMT 536

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + P  +  G   +YIGI  DITE+KKS E
Sbjct: 537 VVPFMDECGKPYKYIGIRTDITERKKSAE 565


>gi|212637394|ref|YP_002313919.1| sensory box/GGDEF/EAL domain-containing protein [Shewanella
           piezotolerans WP3]
 gi|212558878|gb|ACJ31332.1| Sensory box/GGDEF/EAL domain protein [Shewanella piezotolerans WP3]
          Length = 710

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 162/688 (23%), Positives = 297/688 (43%), Gaps = 19/688 (2%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
            L   R   K   +T S I+ I++   +  Y    + ++  +   S+       ++    
Sbjct: 1   MLTMKRHTLKPWQLTLSFISVISLCLAIYLYIAKPSLNMTLLFTISLFCLANIAVLSVS- 59

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHV 390
                +  L+     +      +       L+             L V +   F+ +Q +
Sbjct: 60  -----SFQLLSITPRVRHLTNCVRRWSNGDLNTRNRIGDYGELSYLEVELNHMFSRLQDI 114

Query: 391 LATGYFSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            A  + +Q           A +  +   ++  D     +   P    +LG  S       
Sbjct: 115 SAKEHHNQQTILGKNHLLTAILDSAAAAIYGVDENGRCIFANPQCVKLLGYRSEEQL-IA 173

Query: 450 RNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            N    IH   +D +   + +      R   L+ +     AD     +     PM+ ++ 
Sbjct: 174 CNMRSLIHQNPDDVNAIVSSIIDQEDKRDDNLKEDH-FWRADGSSFPVEYWSHPMTLNDN 232

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +  +   +D +E+ +S   I   A  D LT +PNR   L RL  ++D SA    +   
Sbjct: 233 K-MGAVISFHDNSERLESEALIRHQAHYDALTDLPNRFLALRRLEQLVDASARSGKM-LA 290

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D +KKIND LG   GD +L++   R+ +  +  D + RL G+ F I+L   +++
Sbjct: 291 VIFLDLDDFKKINDSLGHEAGDQLLITAADRLMKATRKEDTVGRLGGDEFIILLDGLSSA 350

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +      P  +  R++ +TASIG A + +   T SE+L+NA+ AMYH K  
Sbjct: 351 NDAQPLAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGKTPSELLRNADSAMYHTKSI 410

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F  +  +     +  +E +  A+E  EL + Y   + + D  I+G EAL++WD
Sbjct: 411 GRNTYSYFTHAMNKEVSRRLAIEEQIHGALERGELQVHYQIQLDIRDGSIMGAEALLRWD 470

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +P  G +S +EF+ IAE+  +I+ +  F+L R     ++W+   N     + IN++ +  
Sbjct: 471 NPVLGIVSPAEFIPIAEQTGVIEPMGEFILHRALETALTWQQTFNDE-FRVAINLSPRQF 529

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +  L + +   +++    P  ++L  +E V++     +   L  L K G  +++DDFGT
Sbjct: 530 RNPNLVQLINDCVNQLGMKPKDLELEITEGVLLSGHAYTLDALMALSKAGFCISMDDFGT 589

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PF  +K + S +           ++ + I MA  +   +IA+ +  +  
Sbjct: 590 GYSSLSYLRTYPFQILKIDRSFIKDMNTDDTSKELIIATIEMAHALGIRVIAEGVETQEQ 649

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
             EL+ M CDY Q   ++ P+  + +LK
Sbjct: 650 FDELSFMMCDYAQGFLISKPVVLDELLK 677


>gi|319763987|ref|YP_004127924.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317118548|gb|ADV01037.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 826

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 128/578 (22%), Positives = 259/578 (44%), Gaps = 10/578 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           +          + +     +     S D ++  D         P    +LG A+  + G 
Sbjct: 241 YSFRDISRQAEVQAGLRLAARVFESSLDAIFIADERHAVARINPGCEQLLGAAAQGVVGR 300

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +   L  +  +D + F   +        G  + E R+R  +++   + +    + +  G 
Sbjct: 301 LVTTLFAMAQDDAE-FMAEVRQGWEQ-AGFWEGELRLRQEEDEHCCVQLSWVALRDDAGA 358

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           + + IG   D++ Q  + + I   A+ D LTG+PNR     R+   ++ ++        +
Sbjct: 359 VAQSIGFMRDLSVQHAAQKRIEELAYSDVLTGLPNRLPLNKRVAAAIE-ASRGHGGGFAI 417

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +ND LG   GD VL  +  R+   L+  D+L RL G+ F I L    ++ 
Sbjct: 418 LFLDLDRFKNVNDSLGHPFGDRVLKLVAERLQGCLRQSDMLCRLGGDEFVIYLHD-ADAA 476

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  +++ +  P  L E   ++  SIG + +     T  +++K+A+ AMY  K RG
Sbjct: 477 IAESVARRVQEEMLRPFMLDEMGFSIQCSIGMSLYPQDGDTLDDLIKHADTAMYRVKERG 536

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 ++         R+ ++  +  A+ +  + + Y P + +    IVG EAL +W  
Sbjct: 537 RGSYGFYQPQMNAHLLSRMKMEHAMRQALSHGHIEVHYQPQVDMATGRIVGAEALARWTD 596

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G +S   F+ +AEE   I  +  +++E+  R+   W       P+ + +N+++ +  
Sbjct: 597 PEFGVVSPGTFVPLAEESGYIVTLGAWVMEQAVREAAHW--MGCGTPMVVSVNVSALEFR 654

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                E + AL+++       ++L  +ESV++ + +  + +L  L ++G+ L++DDFGT 
Sbjct: 655 QAGFVERISALLAQYGLPARWLELELTESVLLQDAQEMQQVLDALARLGVGLSIDDFGTG 714

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL  +    +K + S + G        AI+++I+ M + +   ++A+ +  +   
Sbjct: 715 YSSLAYLKKLTIHRLKIDKSFVGGLPGDGGDCAIVQAIVSMGRALRIGVVAEGVETQAQR 774

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + L  MGCD  Q    A  +        + E     K 
Sbjct: 775 QALQGMGCDCYQGFLCAPAMPAADFRARMAEPATGAKR 812



 Score = 43.0 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 65/265 (24%), Gaps = 28/265 (10%)

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           S  A    +   ++        I     A+  L         GM        L+     +
Sbjct: 7   SFAAIWNGIDLAAWLVDGHALQIRHANEAAARLVGRSVADMEGM----PVHGLVVTPEDL 62

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--------------FTVIQHVLAT 393
             W             +  ++    G LV +   +                  +Q     
Sbjct: 63  IFWGQSHAGIAAGIHSHTWVRNMHSGNLVPVDRRVLAIQASEGDPADRYLLLTMQDRSEH 122

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               + + S        +  + D V   ++  +       +A I  L    +     +  
Sbjct: 123 EASQRELESLLSELRATLDSAADGVLTCNLHGEIRAFNQRLAQIWQLPR-ELLLRRDDAA 181

Query: 454 PYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +H+     D + +R  L +              +R        +  R  P     G  
Sbjct: 182 IRVHMESQVLDAEAYRLRLAAIAHEPMLETTDILHLRNG----MTVEQRSVPQL-IQGRP 236

Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534
              +    DI+ Q +   G+   A 
Sbjct: 237 AGRVYSFRDISRQAEVQAGLRLAAR 261


>gi|332672139|ref|YP_004455147.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Cellulomonas fimi ATCC 484]
 gi|332341177|gb|AEE47760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Cellulomonas fimi ATCC 484]
          Length = 1095

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/602 (23%), Positives = 264/602 (43%), Gaps = 28/602 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV----RDRVTTTPDIATILG 439
              V     A+      +    ER  LA   +   V   D         +     +  ILG
Sbjct: 493  IIVATDRTASIAREAELARSEERFRLAFDNAPVGVALLDARPGAVGRVLRVNRALCEILG 552

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                 + G   +    +H     +    LD  V       + E R  +      W+ + +
Sbjct: 553  FDEVELLGV--DLTALVHPESLPDLLDALDILVDGTVSSERLEHRYTSGAGDDVWVQMNL 610

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              + + +G     IG   DITE++++   +  NA  D+LT +PNR    +RL   L  + 
Sbjct: 611  ALVRDGDGAPDYLIGQFADITERRRAEAELTHNALHDSLTSLPNRALLTERLDRALARAG 670

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             D      V+ +D+D +K +ND LG A GD++LV + RR+  +++  D  ARL G+ F +
Sbjct: 671  RD-GTTVAVLYLDLDNFKDVNDSLGHAAGDELLVHIGRRLTTVMRETDTAARLGGDEFVV 729

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            I     +   +      + +++A+ + +  R +TV+ASIG A  TS    S ++L+ A++
Sbjct: 730  ICEDLTSLEDVGAVTHRITQALAVQVPIAGRMVTVSASIGIAHSTSGHDRSEDLLRAADI 789

Query: 680  AMYHAKHRGGNHVES--FRVSSFRSDRVMIKEDLCLAVE-----------------NSEL 720
            AMY AK  G +  E            ++ ++ DL  A++                 + +L
Sbjct: 790  AMYRAKANGRSRYEFADPHTQVRAVRQLELESDLRSALDLQSHPSLPPTGQPFRRGDDQL 849

Query: 721  YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
             L Y P       ++V +EALI+W+HP  G +S  +F+ +AE+  ++  + L++L     
Sbjct: 850  LLDYQPCFDARTGQLVAVEALIRWEHPARGRLSPGDFLDVAEDRDLMVPLGLWVLRAACA 909

Query: 781  DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                W          I +N++S+ L  +E    +  ++++T   P ++ +  +E   + +
Sbjct: 910  QAAGWHRAYGPRCPEIWVNVSSRQLGRHEFSARLADVLAETGLPPEKLCVELTERQALSS 969

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAI 898
               +   L  L  +G+ L +DDFGT  + L YL  +P   +K + S +   G      A+
Sbjct: 970  AHSTLADLHALPGLGVRLAIDDFGTGYAGLDYLRRLPVSCLKVDASYVASLGVDSTGTAV 1029

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
               ++   + ++ T++A+ +        +  +G D +Q   +A P G + + +LL ++  
Sbjct: 1030 AAGVVNFGRALDLTVVAEGVETPQQRDMIVDLGADVLQGFLLARPAGPDVVDRLLHDQAC 1089

Query: 959  LV 960
            + 
Sbjct: 1090 VT 1091



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 59/259 (22%), Gaps = 20/259 (7%)

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
                 L             +     A   L     ++   +     A        ++  
Sbjct: 128 AVAAFALSGAGVLQADPAGVVVAANPAMSSLAGGAPLVGRALVHLVTARERAQVRDVVAA 187

Query: 350 W----FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
                     +A+  R  +          +          ++   L      Q       
Sbjct: 188 LADGRLDTADLALELRTPDGTRAVRASATVERAPDGSPLRLLLVALDDTQARQTAREQAA 247

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHIN 459
           R   A   V    D +   D              + G     + G     L      H +
Sbjct: 248 RAQSACALVAAMPDAILVCDRSGTIREVNRQAEVLFGYTPEELVGLPVETLVPVSRAHSH 307

Query: 460 D--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           D  R  +     +        +      R        + + +  +  ++G     +    
Sbjct: 308 DWLRKRYTAAAHAQPMSTGPGIAA----RTKGGAEVPVEVSLAAVDLADGP--GVVASVR 361

Query: 518 DITEQKKSLEGILCNAFQD 536
           D+T+ +++L+ +   A  D
Sbjct: 362 DVTQSRRTLDDLR--ASHD 378



 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/146 (8%), Positives = 41/146 (28%), Gaps = 9/146 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLAS 442
              ++ V  +      + +  +  +  +  + +  +   D+  +    +     +LG ++
Sbjct: 357 VASVRDVTQSRRTLDDLRASHDLIAGILSAATEQAIIATDLDGNVELYSAGAERLLGWSA 416

Query: 443 GSMHGPIRNWLPYIHIN-------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             + G           +       D +         +        + +  R    +   +
Sbjct: 417 QEVLGGPAARFDSPAADLSTDWGLDPEAPLEARVRELVGSGVATTHPWIYRTKSGEDRAV 476

Query: 496 IIRIRPMSNSNGDILRYIGIANDITE 521
           ++ +       G     I +A D T 
Sbjct: 477 LVSVTVRRGPAG-PTGLIIVATDRTA 501


>gi|170721412|ref|YP_001749100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169759415|gb|ACA72731.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 699

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 149/571 (26%), Positives = 250/571 (43%), Gaps = 15/571 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441
              ++Q       +SQ +    +     +      V   D+   R+         + G  
Sbjct: 129 ELELLQAKELAEQYSQEMTKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGR 188

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             SM G +      +     D     L       +G    E  V  A      +  R   
Sbjct: 189 GRSMIGRLPG--ECLAPAAADYLEQQLARGARNPKG-YAAETCVDTACG-PRTLRSRALL 244

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N  G     + +A D TE+  +   I   A  D LTG+PNR  F +RL   L     +
Sbjct: 245 SQNREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFNERLKQALVRGHQN 304

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           D L   +  +D+D +K IND LG A GD +L +L +R+   L+  D LARL G+ F ++L
Sbjct: 305 DKLTAALC-LDLDNFKNINDSLGHAFGDKLLRALGKRLRRELREQDTLARLGGDEFAVVL 363

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +      + A  + ++I  P  +   + TV  SIG A        + ++L  A++A+
Sbjct: 364 TGLDGREAACNTAKRLIEAICPPFQIEGHQFTVGVSIGIAIAPDDNEQAEQLLGYADMAL 423

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N  E F V        R +++ DL  A+   +L+L Y PI+      + G E
Sbjct: 424 YEAKRNGRNRYECFHVELDVAARQRRLVETDLRTALHLGQLHLHYQPIVDQQTSSVTGYE 483

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G +   +F+ IAEE  +I  +    L    ++  SW  +       + +N
Sbjct: 484 ALLRWEHPTRGMVMPMDFIPIAEETGLIHELGTRALNLACQEAASWDSEQ-----TVSVN 538

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++     +  L   +   ++ +  +P R++L  +ESV++GN E +   L  L+ +G+S++
Sbjct: 539 LSPVQFKNANLVHTVALALADSGLAPQRLELEITESVLLGNSEENVRTLRALKDLGVSIS 598

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S L YL   PFD +K + S +    + R A  I+R+I  ++ ++     A+ 
Sbjct: 599 LDDFGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIVRAITELSNSLMIKTTAEG 658

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  E  ++ L   GC + Q      P+    
Sbjct: 659 VESEEQMQRLAAEGCSHFQGYLYGRPVPAGE 689



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L +    D  ++            P      G  +  + G   +        + +   
Sbjct: 11  YRLLIQSVVDYAIYLLTPDGIVANWNPGAQRAKGYLADEIIGKHYSLFYS----EAERVA 66

Query: 466 TILDSFVGYRRGRLQYE---FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            + +  +   R   ++E    R+R  D       + I  + + NG ++ +  +  DI+E+
Sbjct: 67  GLPEQNLAQARDTGRFEEIGARLR-KDGSTFHAHVVIEAVRDDNGHLIGFAKVTRDISER 125

Query: 523 KKSLEGILC 531
           ++    +L 
Sbjct: 126 RQQELELLQ 134


>gi|300311453|ref|YP_003775545.1| signal transduction containing PAS/GGDEF/EAL domains protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074238|gb|ADJ63637.1| signal transduction containing PAS/GGDEF/EAL domains protein
           [Herbaspirillum seropedicae SmR1]
          Length = 683

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 162/607 (26%), Positives = 275/607 (45%), Gaps = 19/607 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
                  R  +D  +  L      +  L+                 I +  E+Q+  +  
Sbjct: 73  FVFPPLTRPYSDQERQRLAMLAAFLGRLMQGR--ADTEQRVRALDQIEAKLEQQAQILNQ 130

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
             + V   D      +       + G ++    G  RN L      D +     L     
Sbjct: 131 MHESVITMDPAGFITSWNRGAEQLFGYSAMEAIG--RNVLFLYENEDEE---DSLHDLFL 185

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              GR + E R R    +  W  + +  M + NG  +  IG  NDITE+K + + I   A
Sbjct: 186 EHGGR-EMEVRRRKKSGEVFWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLA 244

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+PNR      +   L+ +   +NL   VM ID++++K IND LG   GD +LV
Sbjct: 245 YYDALTGLPNRTLLTRTVDQALEEA-RHENLHGCVMFIDLNRFKPINDTLGHVAGDMLLV 303

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L+  D++ARL  + F + L    +    A  A  +      P  +   E+ 
Sbjct: 304 EVAMRLRRALREQDVVARLGADEFAVALFGI-DKDSPAYVAQKLLALFDDPFFIDGHELR 362

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-----RGGNHVESFRVSSFRSDRVMIK 708
           V ASIG + +  +   +  +L+ A++AMY AK       GG    S  ++    D + I+
Sbjct: 363 VGASIGVSLYPENATDTETLLRLADIAMYRAKQGGENNEGGYACYSEEMNRNTLDLLRIE 422

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A E +EL L Y P + +    I G EAL++W HP+ G +   EF+ IAEE  +I 
Sbjct: 423 TGLLHAFEYNELLLYYQPKVDMQTLAITGAEALVRWQHPERGLLLPGEFIPIAEETGLIV 482

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ ++L+ + R   +W+D    PPI I +N+ +++     L + + A + + + S   +
Sbjct: 483 QLSDWVLDAVCRQARAWKDAGL-PPIRIALNVTAREFTR-SLPDRVGAALERHMLSGEWL 540

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES++M + +R   ++ ++  +GI+++LDDFGT  S LSYL   P +T+K + S  
Sbjct: 541 ELEITESMLMHSTDRVISIMEKICGLGITVSLDDFGTGYSSLSYLKRFPINTLKIDRSFT 600

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G        AI  +II +AK +   +IA+ +  E     L   GC+ +Q    + P+  
Sbjct: 601 MGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVEDEKQFNFLREAGCNELQGYIFSRPVPA 660

Query: 947 NSILKLL 953
                +L
Sbjct: 661 PDFHAML 667


>gi|228927591|ref|ZP_04090643.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229122073|ref|ZP_04251289.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228661416|gb|EEL17040.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228832071|gb|EEM77656.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 785

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 158/755 (20%), Positives = 307/755 (40%), Gaps = 22/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 94  YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 152

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 153 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 212

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 213 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 272

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502
           ++ G            D+      L   +G R      + RV+  + +  +     I P+
Sbjct: 273 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 328

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +    
Sbjct: 329 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 387

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ 
Sbjct: 388 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 446

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY
Sbjct: 447 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 505

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EA
Sbjct: 506 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 565

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + + IN+
Sbjct: 566 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINL 624

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++
Sbjct: 625 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 684

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ +
Sbjct: 685 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 744

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L +  C  IQ  + + P   ++ +  L
Sbjct: 745 ETKEQLTVLQQNACYLIQGYYYSKPANEDAFINFL 779


>gi|311694580|gb|ADP97453.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 685

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 143/571 (25%), Positives = 265/571 (46%), Gaps = 17/571 (2%)

Query: 392 ATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +    ++   ++ E +    AV  +   ++  D              +LG A   + G +
Sbjct: 116 SGRDITERRQAERELRLTQFAVDHARGAMFQIDADGRVRYANRAACDMLGYAREDLTGRL 175

Query: 450 RNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              L  I     +   R  L         RL  E   R +D     + +    +    G+
Sbjct: 176 ---LSDIDPTMTEGVWREHLHELKAQGSARL--ESLARRSDGGLIPIEVTATYI-EYEGE 229

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            + +    +D+T ++ S E I      D LT +PNR +  +RL   ++ +    N    +
Sbjct: 230 PVSF-SYVDDLTARRASEERIHYLTRFDGLTRLPNRTALHERLEQAIESAQ-HSNSSVAL 287

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++ +D+   +ND LG A GD+VL ++  R+    + P  +AR+ G+ F I+  ++    
Sbjct: 288 LIVGLDRLGLVNDALGHAGGDEVLRAIAERLSACAETPATVARIGGDEFAIMYTTDTQQD 347

Query: 629 -KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                +   + +S++ P+ + ++EI +T SIG A++ +    S E+ KNA  A+  AK R
Sbjct: 348 LHAEYWIQRILESVSEPLRIDDQEICLTCSIGSAAYPTDGTDSGELFKNASSALRCAKGR 407

Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N  +++ ++  +   +R+ ++  L  A +  E  + Y P I +     VG EAL++W 
Sbjct: 408 GRNMHQAYAIATANRDPERLFLESALRGAQKYGEFSVHYQPRIDVDTGAPVGAEALLRWH 467

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS + F+ IAEE  +I++I  ++L         WR+    P   I +N++++  
Sbjct: 468 HPDKGMISPARFIPIAEETGLIESIGEWVLRAACEQNRLWRESDLKPG-RIGVNLSARQF 526

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L   +  L+ ++   P  ++L  +ES++M + + +   +  L+  G+S+ LDDFGT
Sbjct: 527 RHADLALRVVQLLKESGLDPEHLELEITESMLMEDVDAAITTMTCLKDYGVSIALDDFGT 586

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   P DT+K + S +          AI  +II MA+ +   +IA+ +     
Sbjct: 587 GYSCLSYLKRFPIDTLKIDQSFVREITSDPASAAIADAIIAMAQRLGLDVIAEGVETPEQ 646

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + L   GC  +Q    A P+    + KLL+
Sbjct: 647 CRLLRESGCRLMQGYLFARPVPAEDLTKLLR 677



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 18/148 (12%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGRL 479
           +              +G  +  + G   +   W        R   R  + +       R 
Sbjct: 24  VDGVLTYANKAALDAIGAQAEEVLGRPFDATPWW-RFSDQSRQRLRESIRAAGRGLASRF 82

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             +  +   + +   M   + P+ + NG++   +    DITE++++   +        LT
Sbjct: 83  --DVPILDLNGRVRTMDFTLHPVYDDNGNVTYLVPSGRDITERRQAERELR-------LT 133

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPT 567
                Q  +D     +     D  +R  
Sbjct: 134 -----QFAVDHARGAMFQIDADGRVRYA 156


>gi|89899703|ref|YP_522174.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89344440|gb|ABD68643.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 701

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 138/627 (22%), Positives = 265/627 (42%), Gaps = 22/627 (3%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            +         A  + L    +       L         TV++  L              
Sbjct: 83  FLLPVVFITAFAADEVLARAKLTEPFGYILKPFSERELRTVLEMALYKHQADSQARDAAR 142

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHIND 460
                + G  D V   +      +    ++T+ G A   + G     L       +H   
Sbjct: 143 HTQAILDGMVDGVITLNAQGLITSINQAVSTLFGYAPEELLGHNVAMLMPSPHRSLHGGY 202

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +         +   +      +  D     + + +  +   NG   ++IG+ +DIT
Sbjct: 203 LRRHQHTGAGCAMGQGREVDG----QRRDGSVFPISVSVSELM-HNGQ-TQFIGLVHDIT 256

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++S E I   AF D LTG+PNR+  +DRL   L  S         ++++D+D +K+IN
Sbjct: 257 QRRRSEENIYRLAFYDKLTGLPNRRLLMDRLKQALITSTRTGQ-HGALILLDLDHFKQIN 315

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAI 635
           +  G+  GD++L  + +R+   ++  D ++R  G+ F ++L + ++      ++    A 
Sbjct: 316 ETFGLDAGDELLQQVGQRLPTCVRDDDTVSRFGGDEFMVMLEALSSQPQEAAIQAEAIAQ 375

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++A P  L       T SIG   +  ++++  ++LK  ++AMY AK  G N V  F
Sbjct: 376 KILLALAQPYRLRGHTHGTTPSIGVVMFRQAQVSLDDLLKMTDVAMYQAKAAGRNTVRFF 435

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +          ++E+L   +   E  L Y   +        G EAL++W HP  G + 
Sbjct: 436 DPALQALALARTALEENLRRGLALQEFVLHYQIQVDHQ-GLPTGAEALLRWQHPVRGMVP 494

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AEE   I  +  ++LE   R +++W  Q       + +N+++      +    
Sbjct: 495 PAQFIPLAEETGFILPLGQWVLESACRQLVAWSHQRATGSWTLAVNVSALQFAQPDFVAH 554

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + + +  T  +P+ +KL  +ES+++G+ +     +  L+  G+S  LDDFGT  S LSYL
Sbjct: 555 VTSALQATSANPTLLKLELTESMLVGDVQDVITKMNALKAQGVSFALDDFGTGYSSLSYL 614

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +           I ++I+ +  N+   +IA+ +        L  +G
Sbjct: 615 KRLPLDQLKIDQSFVRDLLINPNDAVIAQTIVALGHNLGLQVIAEGVETVGQHDYLASIG 674

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958
           CD  Q  +   P+    +  LLK+  P
Sbjct: 675 CDAFQGYYFGRPVPAAELACLLKQIRP 701


>gi|297155724|gb|ADI05436.1| hypothetical protein SBI_02315 [Streptomyces bingchenggensis BCW-1]
          Length = 695

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 148/565 (26%), Positives = 260/565 (46%), Gaps = 16/565 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   +      G+   V    +  + +     +A + G        P RN   ++H +
Sbjct: 129 LHASEAKFQAVFEGAVVGVGICGLDGEILVVNDAMARMFG--GMDFFRPGRNVNEFVHPD 186

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D      I    V  RR   + E      D    W  + +  + +S G     + +A DI
Sbjct: 187 DAPGVHEIYRELVTGRRDHFRIEKPHYRDDGSVLWTNLTVTLLRDSTGAPQYQLTLAEDI 246

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ+   E +   A  D LTG+PNR  FL+RL  +L  +   D  R  V  +D+D +K +
Sbjct: 247 TEQRLLRERLRYEATHDELTGLPNRTLFLERLDKVL--AGEADAERFGVCYLDLDGFKSV 304

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND LG   GD +L ++  R+ +      ++LAR+ G+ F  ++   +      + A  M 
Sbjct: 305 NDSLGHIAGDRLLKAVAERLRDCAAAPGELLARVGGDEFLALVTGPSAQQDATELARRML 364

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFR 696
            ++A P+ +  RE+ V ASIG     + +++ +E+L++A++ MY AK  GGN  E     
Sbjct: 365 DALAEPVRVDGRELLVRASIGVVDGPAGELSRAEVLRSADITMYRAKAAGGNRFELADAD 424

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            ++    R  +   L  A+E  E ++ Y P++RL D  + G EAL++W HPK G +   +
Sbjct: 425 SNAQVIARHSLTNGLPAALERGEFFIEYQPLVRLADGTVRGAEALVRWLHPKHGVLGPDQ 484

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQ----ANMPPIFILINIASKDLLDNELCE 812
           F+ +AE+  +I  +  ++LE+ AR    WRD          + + +N++   L    L  
Sbjct: 485 FIPLAEDTGLIVPLGRWVLEQAARQARDWRDADAGAGVGDQLRVNVNLSPCQLSHPSLVS 544

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
              A++      PS + L  +E+ ++   E +   L +L  +G+ + LDDFGT  S LSY
Sbjct: 545 DTVAVLEDAGLCPSALCLEVTENDLIDVDEDALRPLRQLADLGVDIALDDFGTGYSNLSY 604

Query: 873 LGYIPFDTVKFNGSLMTG-----STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  +P  T+K + S   G          + I+  I+ +A  ++  +  + +   +  + L
Sbjct: 605 LRRLPVSTLKLDRSFTRGMQRAPIDPVDVKIVEGIVSLAHTLDLAVTVEGVETAVQAECL 664

Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952
             +GCD  Q  + A P     +  L
Sbjct: 665 RGLGCDTAQGWYYARPGPPERLHTL 689


>gi|239827355|ref|YP_002949979.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239807648|gb|ACS24713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 676

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/572 (25%), Positives = 266/572 (46%), Gaps = 16/572 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + V       + +    +   L    S D +  +   R+ +     +  + G A      
Sbjct: 112 RDVTKEKKLERALEESKQHFQLIAEHSTDYILIFSNKRELLYIPSSLEKV-GTAIHQY-- 168

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              + L ++H +D  N     D        ++  EFR R  + ++ WM  + + + N   
Sbjct: 169 SYEDILQFVHPDDLPNIVRKFDELYRTYDTQI-AEFRKRDNEGKWIWMEAQGKAIVNEQN 227

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++   I    +I E+KK  E +   A+ D+LTGI NR  F   +  +++           
Sbjct: 228 ELDYVIVTVKNIGERKKYEEKLRQLAYFDSLTGIANRSYFERYIKQLIE-----SQTDFA 282

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +D DK+K IND      GD  L    RR+  +L+  D  AR+ G+ F ++L +    
Sbjct: 283 LCYLDFDKFKWINDHFSHQAGDYFLQEAVRRVQSVLRTEDFFARIGGDEFVLLLPNIT-K 341

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++   A  + ++   P    ++ I  T S+G A +        +++K A+ A+Y+ K R
Sbjct: 342 EEVTKLADELVQTFHKPFYYEKQLIQSTLSMGIAFFPKDSDRIEQVMKYADQALYNVKKR 401

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           G N  E +R +  R     I++DL  A+   + YL Y P I+L     +G+E L++W HP
Sbjct: 402 GKNGYEFYRPTQNRKAI--IEQDLPFAILREQFYLCYQPKIKLDSGATMGVETLLRWRHP 459

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I   +F+ +AE+   I  I L++LE   R +  W+ Q     + + +N++   L  
Sbjct: 460 SLGEIPPLDFIPLAEQSGFIFEITLWVLEHSCRQVKEWQTQFPG--LKLAVNLSPFLLNR 517

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            EL + +  ++  T ++P  + L  +ES +M N E  + +L +L+ IG+ + +DDFGT  
Sbjct: 518 TELVQHIVHILRDTHFAPEHLILEVTESGLMENFETGKHILTQLKNIGVQVAIDDFGTGF 577

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+Y+  +P   +K + S + G  E      I+ +II +AK+++  ++A+ +     + 
Sbjct: 578 SSLAYIRNLPVSLLKIDRSFIQGIAENSKDATIVDTIIHLAKSLDIQVLAEGVETYHQVA 637

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            L +M CD+ Q  + +  L    + K L+E  
Sbjct: 638 LLQQMDCDFAQGFYFSKSLEAEKLQKWLEEYM 669



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           + V   +     + T P    +LG  +GS      ++               L   V   
Sbjct: 14  EAVAILNTEGYVIYTNPAFQALLG-TNGSGAVRHAHFETI--AEMETIVVEPLLQSVRNG 70

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           +     E+ ++ AD++   +     P+ N  G+I   + +  D+T++KK    +  +   
Sbjct: 71  KSIHNVEWTIKKADDRIVPVSAVFSPIVNEQGEIDSILCVCRDVTKEKKLERALEESKQH 130


>gi|304311724|ref|YP_003811322.1| hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1]
 gi|301797457|emb|CBL45677.1| Hypothetical protein HDN1F_20940 [gamma proteobacterium HdN1]
          Length = 670

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/559 (23%), Positives = 263/559 (47%), Gaps = 17/559 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  + + +W  D   +   T   +A +LG +   M G   +   ++    R  F T
Sbjct: 110 YQQLFELTQEGIWLVDENGNTTKTNSAMAAMLGYSVAEMLGK--HLTHFMDEQGRAEFAT 167

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + +        +L  E+ +     +    +I+  P+   +G     I    DIT+++++ 
Sbjct: 168 MFERRKSGNSEQL--EYDLIKKTGERIHTMIQTAPIYGDHGQFQGAIAGIIDITQRRQAE 225

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  D+LT +PNR+   + L   +  +    +    V+ ID+D +K IND LG  
Sbjct: 226 QQLAWQANYDSLTSLPNRRFASELLEKEIARAKRRQHC-GAVLFIDLDLFKNINDSLGHP 284

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSI 641
           VGD +L+ +  R+ + L+ PDI+ARL G+ F +IL   ++ +          A  ++ +I
Sbjct: 285 VGDQLLIQVGDRLQKHLRTPDIVARLGGDEFIVILPELHSEIAQAKISAQHVANKLQAAI 344

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                + +  + +T SIG A +   + T  ++++ A+ AMY +K  G N V  F     +
Sbjct: 345 GQEFQVNQHPLNMTCSIGIAIFPIEQETIHDIIRQADTAMYRSKRDGRNLVRFFTQELQQ 404

Query: 702 SDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +++  L    A+ +++  L + P +   + ++VG EAL++W HP+ G+I    F+ 
Sbjct: 405 EAERVMELQLLLPKAIADNQFQLFFQPQLNHQN-QLVGAEALLRWFHPEKGSILPFHFIR 463

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALI 818
            AEE  +I A+  ++L+   +++  W D         I INI+ +  + +   + +  ++
Sbjct: 464 AAEESGLILALGNWVLDAACKNLRCWLDAGLPSGFERIAINISPRQFIADSFVDHLCKVL 523

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +P+ I+L  +E +++ N + +   +  LR+ G  +++DDFGT  S LSYL  +P 
Sbjct: 524 DDAAITPNLIELEITEGMLLNNIDSNIAKMQILRRKGFHISIDDFGTGYSCLSYLKTLPI 583

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S            AI+++II MA  +E  ++A+ +     ++ L   GC   Q
Sbjct: 584 SKLKIDQSFTHDLSSDHNDRAIVQTIILMATTLELDVLAEGVETVEQLEFLKSHGCLKYQ 643

Query: 937 DSHVASPLGFNSI-LKLLK 954
             +   P+   +   K ++
Sbjct: 644 GFYFGKPIEAEAFTEKWMR 662


>gi|221309204|ref|ZP_03591051.1| hypothetical protein Bsubs1_07436 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313532|ref|ZP_03595337.1| hypothetical protein BsubsN3_07377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318454|ref|ZP_03599748.1| hypothetical protein BsubsJ_07311 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322727|ref|ZP_03604021.1| hypothetical protein BsubsS_07417 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|41019471|sp|O34311|YKOW_BACSU RecName: Full=Signaling protein ykoW
          Length = 800

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 152/780 (19%), Positives = 300/780 (38%), Gaps = 57/780 (7%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            +S + +   ++      +     G ++  V++       +        +S    F+ +Y
Sbjct: 39  LKSKIWLIGGSLIMGFGIWSMHFVGMMA--VHMEMPMEYEFMPLMAAIGASVSGSFVSLY 96

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY---- 328
              +R       +    +   A +  M +      + +  I    +        I     
Sbjct: 97  F-VSRHILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFV 155

Query: 329 -------HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALV 372
                    +K +   ++       I +      M  T  L                   
Sbjct: 156 SLKIFFDLAVKKHSEHLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQT 215

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIV 424
               + V LI F +   +L + +  +      ER        QSL V    D ++   + 
Sbjct: 216 FHWSIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLE 274

Query: 425 RDRVTTTPDIATI---LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
            D +++      +    G +                       + + +     ++  +  
Sbjct: 275 GDIISSNHAGEEMISKFGFSMHDWRNYTSL-----------KVKRLFEQVKKDKQA-MNS 322

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           +  +     Q   + I + P+   N ++     I  D+T+Q K+ + I   A  D+LT +
Sbjct: 323 DSDLITEKGQ-FHLNITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDL 380

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+  +  LT +L+      +    V  +D++++K IND LG  VGD +L    +R+  
Sbjct: 381 PNRRHAISHLTKVLNR-EHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSS 439

Query: 602 LLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           ++     +ARL G+ F IIL      + +    A  + +    P  + +  +  + SIG 
Sbjct: 440 VVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGI 499

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENS 718
           A          E++K A++AMY AK R  +    +  S    + V + ++  L  A+EN 
Sbjct: 500 AISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIEND 559

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
              L Y P   +  +++ G EALI+   P        EF+ +AEE  +I  I  ++++  
Sbjct: 560 RFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEA 619

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            +    W D+     + + INI+++     +L   ++  ++K    P  +++  +ES+ M
Sbjct: 620 CKQARIWHDKGYD--LSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTM 677

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            N   S+ +L  L ++GI +++DDFGT  S LSYL   P   +K + S +       K  
Sbjct: 678 DNLNHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSE 737

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I  +II M   +   +IA+ +      + L   GCD++Q    + P+      + + E+
Sbjct: 738 QITGAIIAMGHQLSLQVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 797


>gi|256394295|ref|YP_003115859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
 gi|256360521|gb|ACU74018.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
          Length = 750

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/597 (23%), Positives = 268/597 (44%), Gaps = 24/597 (4%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            ++ G   I   I              ++      E ++L    S D +  +D       
Sbjct: 162 GMIIGTFGISRDITARTTTEAQLRAKTAELDRIGTELRALI-ESSPDPMCRFDRQLRYTY 220

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-----YRRGRLQYEFR 484
             P    + G+    + G       +     ++ F    +  +           ++++  
Sbjct: 221 ANPAALRVAGVPESELVGRTNREAGH-----QEKFVREWEQTLRRVLRTGVGDEVEHDLV 275

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +        +   R+ P  ++ G ++  + +++D+T++K+  + +   A +D LT + NR
Sbjct: 276 LA---GTRRFFHTRLVPERDATGTVVSVLTVSHDLTDRKRIEDALAEQAVRDPLTHLANR 332

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
              +DR+   L         R  V+ +D+D++K +ND LG A GD +LV+   R+   ++
Sbjct: 333 ALLVDRIDQALAKMRVQGG-RLAVLFLDLDRFKVVNDSLGHAAGDALLVATAARLRSAVR 391

Query: 605 FP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
              D++AR  G+ F I+          AD A  + ++++ P     + I ++ASIG A  
Sbjct: 392 QGSDLVARFGGDEFVILCEHVQGRKDAADVARRVTRALSAPFERDGQPIHISASIGIAVT 451

Query: 664 TSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           +    T+ E+L++A+ AM+  K R    G        V      R+ ++ +L  A+E  E
Sbjct: 452 SDPMTTADELLRDADAAMFRVKARNHGSGSYIFFDDSVREEAVSRLWLEGELRRAIEEKE 511

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             LVY P+  L D +I+G+EALI+W HP+ G +  S F+ IAE+  +I  I  ++L    
Sbjct: 512 FRLVYEPVYNLRDRQIIGMEALIRWQHPERGLLPPSTFIEIAEDCDLIVPIGRWVLHEAC 571

Query: 780 RDIISW--RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             +  W  R     PP+ + +N++ + L D  L   +   +  +   P ++ L  +E+ V
Sbjct: 572 GQLAVWNRRRDPGKPPLTMAVNLSPRQLNDEGLVAEVANALRGSGLEPEQLTLEVTETAV 631

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--R 895
              P+ ++ +L ++  +G+ + LDDFGT  S L +L  IP + +K + + + G   K   
Sbjct: 632 HEAPQFAQAVLSQVSDLGVQIALDDFGTGYSSLGHLRRIPANALKIDRAFVNGLEHKGGD 691

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            AI+ +++ MA  +    + + I  E   + L  +GCD  Q    A P+   +   L
Sbjct: 692 TAIVTAVVTMAHALGMITVGEGIESEAQYEYLRALGCDQGQGYLFAEPVSAAAFETL 748



 Score = 42.6 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 11/136 (8%)

Query: 401 FSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIR-NWLPYI 456
             + +R  L   +    D ++  D     +  +   A + G  +   M G    ++    
Sbjct: 55  QDELDRICLYNLLSACADTIFFKDRESRFIRVSRSQADLTGAESPTEMIGKTDFDYFTSA 114

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRA--ADNQFHWMIIRIRPMSNSNGDILRYIG 514
           H           D     R G   ++ R      D          +P+ + +G I+   G
Sbjct: 115 H-----AGNAFQDEQKIIRTGVPMFDIREANTLPDASERVFSCSKQPLRDFDGMIIGTFG 169

Query: 515 IANDITEQKKSLEGIL 530
           I+ DIT +  +   + 
Sbjct: 170 ISRDITARTTTEAQLR 185


>gi|126665030|ref|ZP_01736013.1| hypothetical protein MELB17_18219 [Marinobacter sp. ELB17]
 gi|126630400|gb|EBA01015.1| hypothetical protein MELB17_18219 [Marinobacter sp. ELB17]
          Length = 1020

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 135/551 (24%), Positives = 261/551 (47%), Gaps = 13/551 (2%)

Query: 411  VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILD 469
            +  + + V          +       I G  S   + G        IH     +F   L 
Sbjct: 475  LDQTSEAVVIAGADGRIQSVNRSFCEITGYTSKEAIGGSPSILKSGIH---TTHFYEALG 531

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              +     R + E   R  + + +  +  I  + N +G I  Y+ + +D+++ K++   +
Sbjct: 532  LCLSE-NDRWKGEIWNRRKNGEVYPQLGSISIIRNDDGSIRNYVAVFSDVSKTKEAENNL 590

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                  D LTG+PNRQ  LD+++ ++   A   +    V+ +DID++K +ND  G   GD
Sbjct: 591  FFAQNHDPLTGLPNRQYCLDKVSHVIAERAQTVH-EVAVVFLDIDRFKLLNDARGHHTGD 649

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
              L ++ RR+ E      +L R   + F ++L    N  +IA     +  ++A P+ L  
Sbjct: 650  SFLRAVARRLAEACPKNGLLCRWGADEFVLVLEQVTNRDRIAVIVQTLFNALAKPLKLEG 709

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
             E+  +A +G + +      +  +++ AE A+Y AK RG + +E F    +     +  +
Sbjct: 710  HELIPSACVGISFYPEDAADAQGLMQAAETALYLAKERGPSSIELFTPLLAERLQRKFEV 769

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +L  AV+N EL L Y P +      ++G+EAL++W HP  G +S + F+ +AEEL +I
Sbjct: 770  ASELRRAVQNDELTLNYQPQVDCKTAALLGVEALVRWQHPVNGLMSPATFIPLAEELGLI 829

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              +  ++LE+    +  WRDQ +  P  + +NIA + L+     + ++ L++K     S 
Sbjct: 830  GLLGDWVLEKAMAQMARWRDQGHPIP-QVAVNIAPQQLV-PGFADHIRDLLAKHQLPASM 887

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +E  +  + +R   LL  LR +G+ L +DDFGT  S L+++ ++P   +K +   
Sbjct: 888  LELEITEGALERD-DRIIGLLQALRDMGVLLAIDDFGTGYSSLAHIKHLPVTCLKIDKVF 946

Query: 888  MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +    +    +AI+R+++ +  ++   ++A+ +  E     L   G D IQ  +   P+ 
Sbjct: 947  IDDLPDDAYNVAIIRTVLALGHSLGFRVLAEGVETEEQFLFLVEQGIDTIQGYYFGKPME 1006

Query: 946  FNSILKLLKER 956
              ++ + +  R
Sbjct: 1007 AGALEQWIDNR 1017



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 3/158 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            IG T+   +       Q +    +        S D+             +  + T+LG 
Sbjct: 302 FIGRTISIKLPDLQRNEQPLLQPEQDFRRLAELSHDMTVRLQGDGTISYVSSIVKTLLGH 361

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              S+HG     L  ++    D F       +       +   ++R  D    W+   + 
Sbjct: 362 TVESLHGTPFTLL--LNDEGVDTFERA-QRALEQAGVTQKITLKLRHTDRHSVWVETTMW 418

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              +  G     +  A+D+++++K    I     +++L
Sbjct: 419 QPESGAGPGQGVVLTAHDVSQRQKYQLLIEELHQRNSL 456


>gi|158336002|ref|YP_001517176.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158306243|gb|ABW27860.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
          Length = 901

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 235/437 (53%), Gaps = 4/437 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++   E I   AF D LT +PNR  F DRL   L  +  ++     VM +D+D++K IN
Sbjct: 438 QRQDKEEIIRHQAFHDALTDLPNRVLFNDRLNIALASAQRNNG-SVAVMFMDLDRFKLIN 496

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG ++GD++L  +  R+ + L+  D +AR  G+ F ++L    +     + A  +  +
Sbjct: 497 DTLGHSIGDELLKEVALRLQDCLRDGDTVARWGGDEFTVLLPKIESVNDAINTAYRILDA 556

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +     +   E+ VT SIG A +      +  +L+NA++A+Y +K +G    + +  +  
Sbjct: 557 LKAAFVIRRHELFVTTSIGIAIYPEDGQEAEILLQNADVALYRSKEQGRGTCQLYNPTMN 616

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             ++ +++  L  A++  E  L Y P + +   EIVGLEAL++W+HP+ G +S + F+ I
Sbjct: 617 AKEQFILENSLRHALDRDEFILHYQPKVNICTGEIVGLEALVRWEHPEMGLVSPATFIPI 676

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L    +  + W     + P+ + IN++++      L E +  +I  
Sbjct: 677 AEETGLIVELGEWVLRTACQQAVLWHK-LGLAPLSVAINLSARQFYQPNLVEIVAQVIES 735

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P +++L  +E++ + N E ++ +L  L+ +G+ + +DDFGT  S L+YL  +PF+T
Sbjct: 736 TGLNPQQLELEITETIAVKNMEFAKSILCNLQALGVHIAMDDFGTGYSSLNYLKQLPFNT 795

Query: 881 VKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       K + I+ ++I + K ++  ++A+ +  E  ++ L  + C+ +Q  
Sbjct: 796 LKIDQSFIQDLKPASKDVEIINAVIALGKGLDLKVVAEGVDNEEQLELLRSLNCEIVQGY 855

Query: 939 HVASPLGFNSILKLLKE 955
             + PL  +S   +L+ 
Sbjct: 856 LFSRPLSVDSTTDILQA 872


>gi|292491263|ref|YP_003526702.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579858|gb|ADE14315.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 836

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/576 (23%), Positives = 257/576 (44%), Gaps = 16/576 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    E     +     ++  +D          +   +LG +          
Sbjct: 136 ERKQAEAALKQHQEFLQTILDRIPVMIAHFDPQGQLQWLNREAEHLLGWSLEEAKQIDIL 195

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                  +D       +             + R+ + + +   +  R   +  S+G    
Sbjct: 196 AACSPDPDDYQKTLAFMQDA-----HPRWGDLRIHSRNGRV--LETRWANIRFSDGS--- 245

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            IGI  D+TE K     +      D LTG+PNR    DRL+  L  +         V+ +
Sbjct: 246 RIGIGKDVTEYKAYEAQLERQTNYDTLTGLPNRNLLQDRLSHALARARRTRQW-VAVLGL 304

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            +D +K IND LG + GD +L ++  R+   L+  D  ARL G+ F ++L        + 
Sbjct: 305 GLDHFKLINDSLGHSAGDALLQAVASRLEACLREGDTAARLGGDEFVLVLEDLPEKTGVE 364

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +  ++  P  L  +E  ++ASIG + +      +  +LK A++A++ AK++G   
Sbjct: 365 PTIQRILNTLEAPFQLETQEFFISASIGVSFFPQDGRKARTLLKQADIALHRAKNQGRRG 424

Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           ++ +   +S     R+ ++  L  A++  EL L Y P + L +  ++G+EAL++W HP  
Sbjct: 425 LQYYTPAMSMETIRRLSLENSLRSALDRGELKLHYQPQVSLENGRVMGVEALLRWQHPHR 484

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS ++F+ +AEE  +I  I  ++L        +W+     PP+ I +N++++  L  +
Sbjct: 485 GWISPAQFIPLAEENGLIVPIGEWVLNTACAQAKTWQ-VTGEPPLTIAVNLSARQFLQTK 543

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ +   +   +KL  +ES++M + + +   L  L++ GI L +DDFGT  S 
Sbjct: 544 FIAQIDQILGQCGLAAKVLKLEITESLLMQDLKGAITTLHALKERGIQLAIDDFGTGYSS 603

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P D +K + + +   T      AI ++II +A +++  ++A+ +  E  +  L
Sbjct: 604 LNYLKRFPLDQLKIDRAFIRDITREPDDAAIAQAIIALAHSLKLEVMAEGVEREAQVAFL 663

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
               C  IQ  +V+ PL    +   ++E   L++ +
Sbjct: 664 QAKRCHAIQGYYVSRPLPPEQLAPWVRENKRLIQAS 699



 Score = 96.9 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 4/144 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--DRVTTTPDIATILGLASG 443
           +  +   T   +Q       R    +     I++   +         + +I   +G    
Sbjct: 1   MQNYRRKTNKKAQASKVAQARLQHLLTVGPAIIYSRMLRAPYATTFISDNIQAQMGYRPK 60

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   WL  +H  DRD   T L S   +   +L YE+R++  D  + W+      + 
Sbjct: 61  DFIDTPDFWLNRVHPEDRDRVLTKLKSLFRHN--KLYYEYRLQHRDGHYRWIHNGQHLVR 118

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
            ++G  L  +G   DITE+K++  
Sbjct: 119 AADGQPLEIVGYWIDITERKQAEA 142


>gi|254784824|ref|YP_003072252.1| GGDEF/EAL domain-containing protein [Teredinibacter turnerae T7901]
 gi|237687209|gb|ACR14473.1| GGDEF/EAL domain protein [Teredinibacter turnerae T7901]
          Length = 608

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 133/518 (25%), Positives = 236/518 (45%), Gaps = 30/518 (5%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI------RPMSNSNGDI-------- 509
            R  L           ++E   +  D   H   +R       R +    G+         
Sbjct: 74  ARARLQQLQSTSAMECEWELTAKHKDGSTHLYKMRRTRIACHRLLPGYAGEPEIQASSDD 133

Query: 510 -LRYIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  +G+  DITE        +     +    F D LTG+ NR  F DR+   +  +   
Sbjct: 134 VIYTVGV--DITEDELAESVLRDHKSHLNFAIFHDPLTGLANRSLFYDRVNKSIARAKRT 191

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +M++D+D++K +ND LG   GD  L ++ + + + L+  D +ARL G+ F ++L
Sbjct: 192 -KSSLALMLLDLDRFKNVNDSLGHEAGDRYLKAVAQHLVDELRDTDTVARLGGDEFVVVL 250

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +   S  I   A  +   +  P+ +    I+ TASIG + +     +  ++LK+A+ AM
Sbjct: 251 ENVTCSESIEAIANKLLGCLQQPVVIQGHPISCTASIGISVFPHDGDSIDQLLKHADTAM 310

Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N  + +   +S    + ++++ DL  A+E +EL + Y P + L    I GLE
Sbjct: 311 YRAKAAGKNRAQFYVSAMSDSAVNYLLLENDLRRALEQNELRVFYQPQVDLNTGRITGLE 370

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W H   G +S   F+ +AEE  +I+ +  ++LE+       W          + +N
Sbjct: 371 ALVRWQHKDRGLMSPVHFIPLAEETGLIEPLGAWVLEQACARFQHWLAAGIDL-CKVAVN 429

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++          +  ++ KT      ++L  +ES  M N   +  +L  L  +G+SL 
Sbjct: 430 LSTRQFRQEGFEHTVAQVLRKTGLPAQCLELEITESSAMENAANTINMLNCLSDMGLSLA 489

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P   +K + S +T         AI +SII +A N+   +IA+ 
Sbjct: 490 IDDFGTGYSSLAYLQRFPIQKLKIDRSFITNVDRDDQEAAIAKSIIDLAHNMSLEVIAEG 549

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      + L   GCD +Q    + PL   +++ L+ +
Sbjct: 550 VERASQCQWLGERGCDQVQGYFYSKPLSEEALMNLVSD 587


>gi|296105527|ref|YP_003617227.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295647428|gb|ADG23275.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 976

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/576 (24%), Positives = 269/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++      +   +   + + A+  S  +V   D           +    G     +
Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R        ++       +   +         E   +    +  W+   I P+ N
Sbjct: 467 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +I  Y+ +  D+T++K   E +   A  DNLT +PNR   +++L   +  S  ++  
Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 581

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K+IND LG A+GD +L +L+ R   +++  D +ARL G+ F +IL + 
Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A   R+  + P  +  +E+ V+ SIG A +      +  +++NA+ AMY +
Sbjct: 642 MQDKDAESIAKKCREICSQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTAMYQS 701

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG N+   F+ +     ++ + IK +L  A   +ELY+ Y PII L + ++V  EAL+
Sbjct: 702 KIRGKNNWTVFQKTMIDGANNHIRIKTELHQAFTRNELYICYQPIIDLKENKVVAAEALL 761

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W +   G I+  + + +AEE  MI  +  ++L+++      W        I + +NI++
Sbjct: 762 RWQNTTLGQINPDQIISLAEETGMIIPLGYWILDKVCTQAKEWEFITG-SKIKVAVNIST 820

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +    +Q ++ +T  S   +    +ES  + + +     L +L  IGI  +LDD
Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDIGIHFSLDD 880

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S L Y+   PF  +K +   +    +   +++++ SII MA+N++ ++IA+ I  
Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 940

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ +  M CD +Q  + + PL  +  L  L  +
Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFFLMNK 976



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     + Q +    +    +    ER    +    D ++  ++    +         L 
Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHNLQGAFLEVNEAACLSLN 342

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
            +   +       +           +  L+      ++G +  E   R  D     + +R
Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTIFPVDVR 396

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + N+ G+ L  + I  DIT QK+S   I   
Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 3/120 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  +GD V   +         P    I    +          L    + D   F  I  
Sbjct: 185 ILEKAGDSVEITNEEAVIQYVNPAFENITLYNAREAINKTVASLLRSPVEDAQLFEEINQ 244

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528
           +         + + R R  D  +      I P+ +   G I ++I I  DITEQ      
Sbjct: 245 TLKSGNT--WKGQIRSRKKDGSYWVAQTIIVPVMDDELGRITQHIAIKQDITEQVHRFNQ 302


>gi|320324868|gb|EFW80940.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 729

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + +    
Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 385 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           +HP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 505 EHPEYGLLSPDQFVHILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 684

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  L R+GC   Q    + PL       LL +R 
Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 721



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R  LA+  +    WD DI  +R+  +   + + G+A+       R +   
Sbjct: 26  AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +R   R +  + +  ++  LQ  +R +  +     +  R R   N +G  ++  G 
Sbjct: 86  LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145

Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539
             DIT+Q      ++ E     AF    D++T
Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177


>gi|313200148|ref|YP_004038806.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312439464|gb|ADQ83570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 819

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 157/613 (25%), Positives = 287/613 (46%), Gaps = 17/613 (2%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAV 411
            L   I                +V+   +IG     + + A       I       S+ V
Sbjct: 213 MLVEPIMNPDGELHWAETYKSPVVIDGQVIGTVGFARDITAERRLEAEIARRENEYSMLV 272

Query: 412 LGSGDIVWDWDIVRDRVTTTP--DIATILGLASGSMHG--PIRNWL-PYIHINDRDNFRT 466
                 V  +D    RV       +   L      + G  P   W    I+I   D  + 
Sbjct: 273 QNLPLTVVRYDRECRRVFVNSYCAMRESLQQRISEVMGKTPAEYWSGNIINITAEDYQKR 332

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQKKS 525
           IL+         L+    +     +   +  +RI P  ++ G+++  + +A+D+TE  + 
Sbjct: 333 ILEVMATGESDTLE----LITQYGEEQLVHLVRIVPERSATGEVIGAMTVASDVTENSRY 388

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I   A+ D LT +PNR  F  +L  +++ + T+ +    ++ ID+D +K IND LG 
Sbjct: 389 RKRIEQLAYHDILTELPNRLLFNQKLQMLIEQTPTNKHG-FCLLFIDLDNFKTINDTLGH 447

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           +VGD +L+ ++RRI +LL   D+LAR+ G+ F I L    + L  A  A  +  ++ +P 
Sbjct: 448 SVGDKLLIEVSRRIRQLLGKDDMLARMGGDEFAISLPHCLSRLDAALLAARIIDALNVPF 507

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +   +  V+AS+G A +        ++LK+A+LAMYHAK +G N+ + +        ++
Sbjct: 508 EVSSIKFFVSASMGIAFYPEDSSHLDDLLKHADLAMYHAKRQGRNNFQFYNQELTVNAAE 567

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R++++  L  A+   EL L Y PI+ L   E+ G EAL++W+    G +   +F+ IAEE
Sbjct: 568 RLLMENLLRQALAKGELQLYYQPIMELATGEMYGAEALLRWNSFDLGMVGPDKFIPIAEE 627

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  I  ++L    R  ++W       P  + IN++S+  +  +    +   + +T  
Sbjct: 628 RGMIVEIGGWVLREGCRTAVAWNA-LRSQPYVLAINLSSRQFMQQDFLTTITDCLQETGC 686

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  +K   +ES+++ + +  R  L  L  IGI++ +DDFGT  S L YL   P   VK 
Sbjct: 687 RPQWLKFEITESLLLHDSDHIRQTLEALHSIGIAIAIDDFGTGYSALGYLNKFPVSQVKI 746

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++      +   ++++II MA ++   ++A+ +      + L+++GC Y+Q  +  
Sbjct: 747 DRSFVSDIATNTESALLVKAIIAMADSLGKDLVAEGVETAEQAELLSQLGCQYVQGYYYG 806

Query: 942 SPLGFNSILKLLK 954
            P+   +  + L+
Sbjct: 807 RPVPLETFNQSLR 819



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 3/179 (1%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                   +  +   D+I  + +      +I +     Q        +  I    + Q  
Sbjct: 85  GGCVAHFTVGSQEIFDLISFSPLSDEHGQMIGVLAIGRQTDQRDAAETLEIRRREQYQRA 144

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +     +VW  D     + T    A +L +A        +    Y      + +     
Sbjct: 145 VLNTFPFMVWLKDKQSRFLATNKAFAEVLQIAHDE-DMRGKTDFDYFPHAMAEGYVADDQ 203

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             +     ++  E  +   D + HW      P+   +G ++  +G A DIT +++    
Sbjct: 204 EVLASGAAKMLVE-PIMNPDGELHWAETYKSPVV-IDGQVIGTVGFARDITAERRLEAE 260


>gi|330875724|gb|EGH09873.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 730

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 145/583 (24%), Positives = 267/583 (45%), Gaps = 26/583 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 155 QAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAREVLGRTAHEVGI 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +        R  +   +  +      E   R  +     + + +  ++ +N     
Sbjct: 215 WTDTV-------QREYMIDELRQKGRMHHREMNGRDKNGAPLVLDVSVEFITLNN--TAC 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   I    + D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 266 LLMNARDIGQLKSAQAQIQHLTYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + S    
Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEQV 384

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R  +A P+ L    + VT S+G        +T +++LK A++A+Y AK 
Sbjct: 385 THQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADIALYRAKD 444

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +     +I G EAL++W
Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALARNEFHLHFQAQVDCRTNQITGAEALLRW 504

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
            HP++G +   +F+ I EE  MI  +   +L+   +       Q         + +N++ 
Sbjct: 505 QHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVSP 564

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    ++  E ++  + +     + +KL  +E +V+ N + + L +  LR +G+   +DD
Sbjct: 565 RQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMDD 624

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVET 684

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              +  L R+GC   Q    + PL       LL+ R  L  + 
Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPEFETLLQLRRQLQTSA 727



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +     R  LA+  +    WD DI R R+  +   + + G+ +       R +   +
Sbjct: 27  ERILEETRARLELALDLAQMGTWDLDITRSRLQASARASFLHGMDAQPFDDDSRLFFERL 86

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +RD  R    + +  R+  LQ  +R +  D     +  R R   +  G+ ++  G  
Sbjct: 87  PAEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRARIYRDETGNPVKLSGTL 146

Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539
            DIT+Q      ++ E     AF    D++T
Sbjct: 147 LDITQQCVQAALEASEEKFAKAFHSSPDSIT 177


>gi|148358169|ref|YP_001249376.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148279942|gb|ABQ54030.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila str. Corby]
          Length = 972

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/576 (24%), Positives = 269/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++      +   +   + + A+  S  +V   D           +    G     +
Sbjct: 403 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 462

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R        ++       +   +         E   +    +  W+   I P+ N
Sbjct: 463 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 518

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +I  Y+ +  D+T++K   E +   A  DNLT +PNR   +++L   +  S  ++  
Sbjct: 519 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 577

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K+IND LG A+GD +L +L+ R   +++  D +ARL G+ F +IL + 
Sbjct: 578 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 637

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A   R+  + P  +  +E+ V+ SIG A +      +  +++NA+ AMY +
Sbjct: 638 MQDKDAESIAKKCREICSQPFVIESQELLVSTSIGIAIYPDHGKDAKTLMRNADTAMYQS 697

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG N+   F+ +     ++ + IK +L  A   +ELY+ Y PII L + ++V  EAL+
Sbjct: 698 KIRGKNNWTVFQKTMIDGANNHIRIKTELHQAFTRNELYICYQPIIDLKENKVVAAEALL 757

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W +   G I+  + + +AEE  MI  +  ++L+++      W        I + +NI++
Sbjct: 758 RWQNTTLGQINPDQIISLAEETGMIIPLGYWILDKVCTQAKEWEFITG-SKIKVAVNIST 816

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +    +Q ++ +T  S   +    +ES  + + +     L +L  IGI  +LDD
Sbjct: 817 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDIGIHFSLDD 876

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S L Y+   PF  +K +   +    +   +++++ SII MA+N++ ++IA+ I  
Sbjct: 877 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 936

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ +  M CD +Q  + + PL  +  L  L  +
Sbjct: 937 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFFLMNK 972



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     + Q +    +    +    ER    +    D ++  ++    +         L 
Sbjct: 279 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHNLQGAFLEVNEAACLSLN 338

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
            +   +       +           +  L+      ++G +  E   R  D     + +R
Sbjct: 339 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTIFPVDVR 392

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + N+ G+ L  + I  DIT QK+S   I   
Sbjct: 393 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 424



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 3/120 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  +GD V   +         P    I    +          L    + D   F  I  
Sbjct: 181 ILEKAGDSVEITNEEAVIQYVNPAFENITLYNAREAINKTVASLLRSPVEDAQLFEEINQ 240

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528
           +         + + R R  D  +      I P+ +   G I ++I I  DITEQ      
Sbjct: 241 TLKSGNT--WKGQIRSRKKDGSYWVAQTIIVPVMDDELGRITQHIAIKQDITEQVHRFNQ 298


>gi|322833108|ref|YP_004213135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
 gi|321168309|gb|ADW74008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
          Length = 694

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/605 (23%), Positives = 267/605 (44%), Gaps = 30/605 (4%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVI-QHVLATGYFSQGIFSDGERQS------------- 408
            +      ++  L     +IGF  I + V       + +    E                
Sbjct: 91  GSRFWAHIIIEALREAGEIIGFAKITRDVTERRETEKALLQAKELAESNSEQLSSLSHFL 150

Query: 409 --LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +       ++ +  + R+ +        +LG+    M G        I       F  
Sbjct: 151 NTVIANIPSSVIVENAVSREILLVNRQAERLLGIPRDKMLGKRPQDCMGI---GLSTFIN 207

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                     G  + E ++  A      +      +   +      + IA+D+T+Q+ + 
Sbjct: 208 KQSDECLRAEGLHRSEQQLLTAIGD-RTLQTTSSVIRGHDPQTSYVMMIADDVTDQQAAH 266

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             I   A  DNLT +PNR  F  RL+  L    +  +     + +D+D +K +ND LG  
Sbjct: 267 ARIHHMAHHDNLTSLPNRILFSQRLSEALQR-DSYTHSHTATLCLDLDNFKNVNDALGHQ 325

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD++L ++ +R+   L+  D LAR+ G+ F ++L    +       +  + +S+  P+ 
Sbjct: 326 VGDELLRAIAKRLRMTLRDDDTLARIGGDEFAVVLPGLKDISAAHQISKRLIESVRPPVI 385

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +    ++V  SIG A   S++ T  ++L+ A++A+Y AK  G N  E FR+    + R  
Sbjct: 386 IDGHSLSVGLSIGIALAGSTENTPDQLLRCADMALYEAKRNGRNRYEDFRLEMDAAARKR 445

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ DL  A+  ++L L Y PI     + ++G EAL++W HP+ G I   +F+ IAEE 
Sbjct: 446 RVVEMDLRDAITCNQLRLYYQPITDARHDAVMGYEALMRWHHPENGLIMPVDFIPIAEET 505

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I ++  F L    R+  SW+         + +N++     ++ L   +++ +  +   
Sbjct: 506 GLIHSLGSFALHEACREAASWKGSQ-----TVAVNLSPIQFKNSGLLSVVESALEASGLD 560

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PSR+++  +ESV++ N   +   L +L+ +G+ + LDDFGT  S LSYL   PFD +K +
Sbjct: 561 PSRLEVEITESVLLDNTLGNISTLRKLKSLGVRIALDDFGTGYSSLSYLRSFPFDKIKID 620

Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    + R   AI+R+I  M+++++    A+ +  +   + L   GC   Q      
Sbjct: 621 RSFINDMHDSREALAIIRAITGMSRSLDIQTTAEGVETDEQFRRLKEEGCTLFQGYFFGR 680

Query: 943 PLGFN 947
           P    
Sbjct: 681 PQPSE 685



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++                   G     + G   ++  +    DR N             
Sbjct: 20  AIYMLTPDGHIANWNAGAQRAKGYTPEEVVGK--HFSCFYTEEDRQNGWPQRGLETARST 77

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           GR + E   +  D    W  I I  +    G+I+ +  I  D+TE++++ E  L  A
Sbjct: 78  GRYESEGWRQRKDGSRFWAHIIIEALR-EAGEIIGFAKITRDVTERRET-EKALLQA 132


>gi|217978731|ref|YP_002362878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylocella silvestris BL2]
 gi|217504107|gb|ACK51516.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylocella silvestris BL2]
          Length = 608

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 129/561 (22%), Positives = 235/561 (41%), Gaps = 17/561 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           + +  E   L   G        D      +      A + G ++  +             
Sbjct: 46  LKAQDESFRLLFEGGPIPTALCDPESARFLVVNDAAAALWGFSASELLAMTA--FDITPE 103

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  R                  R   +D     +++  R +   +G     +    D
Sbjct: 104 EDWEEVRAFATRDPESAANPRVG--RHLRSDRSVIHVVVHSRAIVFRDGPA--ILVTIID 159

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T+++++   +      D LT +PNR  F  RL   L    +       V+ +D+D++K 
Sbjct: 160 VTDKQRAELRLAHLEHHDALTDLPNRALFRIRLDEALSRLDSGQG-EIAVLYLDLDQFKA 218

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L ++  R+   L+  D LAR  G+ F  +        +    A  + 
Sbjct: 219 INDTLGHTVGDALLRAVADRLRACLRPGDTLARFGGDEFAFLCGRLAGPDEAGKLASLIV 278

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +    + + ASIG A        S  +LK+A++A+Y AK  G      F   
Sbjct: 279 DEVGGPYVIQGHCVEIGASIGVAMAPGDGRDSDLLLKHADMALYRAKEEGRRAFRFFEPE 338

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  ++ DL  A+  SE  L Y P++ L    I G EAL++W HP  G I  + 
Sbjct: 339 MDARAQARRQLEADLRQALIASEFELHYQPLVALQTGAITGFEALLRWRHPIRGMIPPAA 398

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  + L +   +   W +      + + +N++S      +L   +  
Sbjct: 399 FIGLAEETGLIVPLGEWALRQACAEAAKWPNH-----LKVAVNLSSVQFKRGDLIHSVLT 453

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +    SR++L  +ES+++   E +   L R+R +G+S+++DDFG   S LSYL   
Sbjct: 454 ALANSGLPASRLELEITESILLAESEANLATLHRMRSLGVSVSMDDFGIGYSSLSYLRAF 513

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFD +K + S ++         AI+R++  +  ++  +  A+ +     +  L   GC  
Sbjct: 514 PFDKIKIDRSFVSELGHGCGSRAIVRAVAGLGSSLGVSTTAEGVETSEQLAWLRAEGCTE 573

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q  + + P+  + I  +LK 
Sbjct: 574 MQGFYFSPPVPASKIAPMLKA 594


>gi|312961254|ref|ZP_07775759.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           WH6]
 gi|311284912|gb|EFQ63488.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           WH6]
          Length = 862

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 143/596 (23%), Positives = 276/596 (46%), Gaps = 24/596 (4%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQ----GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +  +++         + A+    Q     + +   R    V  S D VW+ D        
Sbjct: 279 MTWVILRRSTAAALALDASHDSLQSSQNALATSEARFRDVVEASSDWVWEIDADWRFTYL 338

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           +    ++ GLA  +  G   N    +   D              RR  L  +     A  
Sbjct: 339 SERFESVTGLARNTWIGAAMN--DLLETED---GLLSQWLCTPGRRPDLSVQCLYLDAQG 393

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           Q     +  R M         + G A D+TE+ ++   I   +  D LTG+PNR      
Sbjct: 394 QERTTRLSARQMPCG-----GFRGTATDVTEEVEARRRIEFLSLHDALTGLPNRTRLQAF 448

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L + L  +         ++ +D+D++K +ND+LG A GD VL  ++ R+   ++  D++A
Sbjct: 449 LDSKLK-ALPPPERPLVMLSLDLDRFKPVNDLLGHAAGDRVLNEVSSRLSACVRHGDLVA 507

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F +IL        + +    +  SI   I + E+++ ++ASIG     +     
Sbjct: 508 RVGGDEFVLILTDAGTQDDVENLCRRLIGSIEQAIRIDEQDVFISASIGITLAPNDASEV 567

Query: 671 SEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           +E+L+ A++A+Y AK  G N    +   +++   +R  ++ DL  A+++ EL L + P  
Sbjct: 568 TELLRYADIALYEAKAAGRNTWRFYSGEMNARIIERRRLESDLRYAIKHGELRLHFQPRY 627

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
           R+ D ++VG EAL++W HP  G I+   F+ IAEE  +I +++ ++L         W   
Sbjct: 628 RIADGQMVGAEALVRWQHPVRGLIAPDTFIPIAEESGLILSLSDWVLATACACAAQWP-- 685

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                +F+ +N++  +     L + ++  +  +   P+R+++  +ESV++ +   +  ++
Sbjct: 686 ---GNLFVSVNLSPIEFKRGHLVQRVRHALDASGIDPARVEVEMTESVMLEDAVGALEVM 742

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+++GI + +DDFGT  S LSYL   PFD +K + S +T    ++   AI+++I+ + 
Sbjct: 743 HTLKQLGIRIAMDDFGTGYSSLSYLRAFPFDGLKIDRSFLTRLEDSDDDKAIIQAIVGLG 802

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + +  T+ A+ I     +  L  + CD  Q   ++ P+  ++   LL +     K+
Sbjct: 803 RALALTVTAEGIETAEHLAMLKAVACDEGQGYFLSRPMDVDAFNGLLAQDTQQTKS 858


>gi|321315095|ref|YP_004207382.1| putative sensor protein [Bacillus subtilis BSn5]
 gi|320021369|gb|ADV96355.1| putative sensor protein [Bacillus subtilis BSn5]
          Length = 800

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 152/780 (19%), Positives = 302/780 (38%), Gaps = 57/780 (7%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            +S + +   ++      +     G ++  V++       +        +S    F+ +Y
Sbjct: 39  LKSKIWLIGGSLIMGFGIWSMHFVGMMA--VHMEMPMEYEFMPLLAAIGASVSGSFVSLY 96

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY---- 328
              +R       +    +   A +  M +      + +  I    +        I     
Sbjct: 97  F-VSRHILTYYRLLTGSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFV 155

Query: 329 -------HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALV 372
                    +K +   ++       I +      M  T  L                   
Sbjct: 156 SLKIFFDLAVKKHSEHLIFYKVVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQT 215

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIV 424
               + V LI F +   +L + +  +      ER        QSL V    D ++   + 
Sbjct: 216 FHWSIFVTLIIFCIQTLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLE 274

Query: 425 RDRVTTTPDIATI---LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
            + +++      +    G +                       + + +     ++  +  
Sbjct: 275 GNIISSNHAGEEMISKFGFSMHDWRNYTSL-----------KIKRLFEQVKKDKQA-MNS 322

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           +  +     Q   + I + P+   N ++     I  D+T+Q K+ + I   A  D+LT +
Sbjct: 323 DGELITEKGQ-FHLNITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDL 380

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+  +  LT +L+   T  +    V  +D++++K IND LG  VGD +L    +R+  
Sbjct: 381 PNRRHAISHLTKVLNREHTL-HYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSS 439

Query: 602 LLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           ++     +ARL G+ F IIL      + +    A  + +    P  + +  +  + SIG 
Sbjct: 440 VVPDNGFIARLGGDEFIIILTDANTGTGEADVLARKIIQIFKKPFKIQDHTLVTSVSIGI 499

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENS 718
           A          E++K A++AMY AK R  +    +  S    + V + ++  L  A+EN 
Sbjct: 500 AISPKDGTDGLELMKKADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIEND 559

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
              L Y P   +  +++ G EALI+   P        EF+ +AEE  +I  I  ++++  
Sbjct: 560 RFVLHYQPQFSVKKQKMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEA 619

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            +    W D+     + + INI+++     +L   ++  ++K    P  +++  +ES+ M
Sbjct: 620 CKQARIWHDKGYD--LSVAINISARQFQSEDLIPLIKDTLNKYQLPPQLLEVEVTESMTM 677

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            N + S+ +L  L ++GI +++DDFGT  S LSYL   P   +K + S +       K  
Sbjct: 678 DNLDHSKKVLSSLTELGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSE 737

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I  +II M   +   +IA+ +      + L   GCD++Q    + P+      + + E+
Sbjct: 738 QITGAIIAMGHQLSLQVIAEGVENAAQKQLLYEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 797


>gi|295705929|ref|YP_003599004.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294803588|gb|ADF40654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium DSM 319]
          Length = 571

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 141/559 (25%), Positives = 260/559 (46%), Gaps = 20/559 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            LA+  S  IV   D              I       + G     +   H +    F+ +
Sbjct: 21  ELALNESS-IVAITDSRGFINHVNDKFCEISKYERHELLGQDHRIINSKHHSSL-FFKEL 78

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +    +      E + +A D   +W+   I P  +  G   +Y+ I NDIT++K   E
Sbjct: 79  WSTIRSGK--VWHGEIKNKAKDGSSYWVDTTIVPFLDERGKPYQYVSIRNDITKRKAYEE 136

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A+ D LT +PNR            L   +      ++ +D+D++K IND LG   
Sbjct: 137 KIKQMAYYDPLTNLPNRYW--LNKQLKKLLLNRESPELLAILFLDLDRFKSINDTLGHHH 194

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +  R+ + +   D ++R  G+ F ++L S     +I +    + K +++P  +
Sbjct: 195 GDVLLRRVAERLRKCIPSSDFISRHGGDEFILVLHSLKTVEEIEEMTEQIVKEMSLPFYI 254

Query: 648 LEREITVTASIGFASWT----------SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++  + S+G + ++           +      ++K A++AMY AK  G N       
Sbjct: 255 DGDKVLTSTSVGISLFSKECQQYIIPKDADELIDRLIKQADIAMYVAKRNGRNTYAMSSS 314

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +      + ++ +L  A+E  E  LVY P+I L   +++G EALI+W+  K+G +  +
Sbjct: 315 SSNERIIKTISMENELKYALERDEFQLVYQPLIDLKTSDVIGAEALIRWNSAKFGTVYPN 374

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ I EE+ +I  +  ++LE   + + +W +  ++    I +N++   L  +     M+
Sbjct: 375 EFLPILEEVGLIVPVGKWVLEEACKQMKAWTELNSLAS-KIGVNVSPIQLKSSRFVAEME 433

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T + P  ++L  +ESV + N + S+ +L RLR +G+ + +DDFGT  S LSYL +
Sbjct: 434 QILKRTGFEPRFLELEITESV-IQNSQESKKVLNRLRSLGVKVAMDDFGTCYSSLSYLKH 492

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +P +T+K + S +    E    ++ +II M K +   + A+ I  E  ++ +T  GC   
Sbjct: 493 LPINTLKIDKSFIDDLDEVGKVLVETIIQMGKKLNFDLTAEGIENEEQLQFVTEQGCHIG 552

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q      PL    + +LLK
Sbjct: 553 QGYLFDKPLSPEEMSRLLK 571


>gi|144898553|emb|CAM75417.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 823

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 150/606 (24%), Positives = 268/606 (44%), Gaps = 19/606 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R          VG L           IQ + A           GE        + + V  
Sbjct: 220 RDGGSFPIQVRVGALHFGDESYRVVSIQDLTARKVAEAESRLHGE----IFTHAQEGVLV 275

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRL 479
            D     ++  P    + G     + G    +L    H +D   F   +   + +R G  
Sbjct: 276 TDTSGTILSANPAFCRMTGYELDELVGSPSGFLRSGRHPDD---FYGDMWEVL-HRDGHW 331

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             E   R  D       + I  + ++NG +  Y+G+  DI+  K+  E +   A  D LT
Sbjct: 332 SGEICNRRRDGDVIPQWVSISAVRDANGSVGNYVGVYMDISALKRHEEALRHMAHHDALT 391

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    DRL   L  +     +   V  +D+D +K +ND LG  VGD VL+   RR+
Sbjct: 392 GLPNRLLLADRLDVALAKARRTGKM-VAVAYVDLDGFKPVNDRLGHHVGDSVLIQAGRRL 450

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL--LEREITVTAS 657
            + +   D +ARL G+ + +++   ++  +       +  ++A P+     +  I++TAS
Sbjct: 451 LDSVAADDTVARLGGDEYVLVMQDMDDDQQCRQRLSQVLTAMAEPMRFLDEDSAISITAS 510

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAV 715
           IG A + +       +L++A+ AMY AK  G N +  F         +     + + LA+
Sbjct: 511 IGAALYPNDDSDPDTLLRHADRAMYQAKQEGRNRLAMFDPQLDLQGTLRRNTMKSVRLAL 570

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E+ +  L Y P + +    +VG EALI+W HP+ G +  +EF+ + E+  +  AI  ++ 
Sbjct: 571 EDGQFVLFYQPKVNMRLGTVVGAEALIRWLHPERGLLPPAEFLPLIEDDSLDLAIGEWVT 630

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSE 834
                 + +W+    +  I + +N+A+  LL N+    ++ ++++     P  ++L   E
Sbjct: 631 RSSLAQMAAWKRAGAV--IPVSVNVAASHLLSNDFAGRLEEILAEFPDVPPRMLQLEVVE 688

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893
           +  + +  R+R +L   R +G+S+ LDDFGT  S L+YL ++P DT+K + S +    + 
Sbjct: 689 TAALEDIGRAREVLEACRALGVSVALDDFGTGYSSLTYLRHLPIDTLKIDRSFVLNLPDD 748

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              + I+R +I +A      ++A+ I        L  +GC+  Q   +A P+     L  
Sbjct: 749 MDDLTIVRGVIVLAAGFGRDVLAEGIEKTEHGDMLLELGCELGQGYRIAPPMPAGDFLGW 808

Query: 953 LKERFP 958
           L    P
Sbjct: 809 LAAWQP 814


>gi|170725236|ref|YP_001759262.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169810583|gb|ACA85167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 583

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 262/572 (45%), Gaps = 16/572 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + + +  +R    V    D+V+  D+             + G +  +  G    
Sbjct: 17  AQNRLIEHLQASEKRYEDLVGHLRDVVFHLDLALKWTFLNQAWHGMSGYSIENSLGKY-- 74

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   +   D         + +  +   +  E     ADN      +  R + +  G    
Sbjct: 75  FAENLSSQDTQKCTAGFQALLTKQLTEMSEEITFNTADNDKRIFELSCRAVKDETGQFAG 134

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           + GI  DITE+  +   I   A+ D LTG+ NR+  ++ L   L            ++ I
Sbjct: 135 FAGIITDITERIVAENKITFMAYHDALTGVANRRLLMEHLAQELTKPC---GHCSALLYI 191

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENN---- 626
           D+D +K++ND  G  VGD +L  ++  + E  +   D++AR+ G+ F + L +       
Sbjct: 192 DLDNFKQVNDHYGHTVGDLLLCEVSDVLSEYAQDEEDLVARMGGDEFILFLSNLGENSAL 251

Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            + K+      +R  ++ P+ L + +I +T+SIG  +   + ++ S++ K A+ A+YH+K
Sbjct: 252 VTQKLVQITEKIRVQLSEPVLLGKLKIQITSSIGVVTLDHATMSHSDIFKYADAALYHSK 311

Query: 686 HRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           + G N V  +     +S+R    ++++L  A+ N E  L Y P +      I+  E L++
Sbjct: 312 NTGKNQVRFYDEELEQSERRRHQLEDELSQAITNEEFLLYYQPQVDAEGTTILKAEVLLR 371

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G ++  EF+   EE  +I  +  ++LE   R +  W +      + + IN+++ 
Sbjct: 372 WQHPRHGIVNPDEFIPHLEEYGLIIPVGKWILEESCRQLKVWHNAGKHE-LCLSINVSAN 430

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +  E ++  + K   S  +I+L  +E V + +   +   + RL+++GI + LDDF
Sbjct: 431 QFKHPDFIEFIEICLIKHQISGEQIELELTEGVAIHDIPSTIKKMDRLQELGIRIALDDF 490

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL ++P +T+K + S + G        AI+ + + MA ++  T++A+ +   
Sbjct: 491 GTGYSSLSYLKHLPINTLKIDQSFVQGLPHDGYDAAIVETTMVMAHHLGLTVVAEGVENR 550

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  L +  C   Q    + PL  +   +L+
Sbjct: 551 VQLAFLKKQQCHLYQGFLFSQPLNVDRFSELI 582


>gi|83643391|ref|YP_431826.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631434|gb|ABC27401.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 826

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 146/594 (24%), Positives = 262/594 (44%), Gaps = 14/594 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +G L  I      T+ + +       + +     +    +     +++  D     V   
Sbjct: 229 LGYLAQIGNQFLETLQKRLEERRQAEETLRDSERQTRQIIDTVPHLIYAKDRNGAFVFVN 288

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
             +A+        + G    +    I   +   F       +  ++     E  +     
Sbjct: 289 QALASFYDRNITEIEGGDHHSLHHLISNLESVRFDNEDREVIDKQKVMFIPEHGLTDIYG 348

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +   +     P     G     I    DIT++ ++   +   AF D LTG+PNR  F DR
Sbjct: 349 RRRILQSNKIPFRF-FGKPCALIVSV-DITDRVEAQSRVEQLAFHDPLTGLPNRNLFYDR 406

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           LT  +  S  +      +++ID+D +K IND LG +VGD++L ++ + +   L     + 
Sbjct: 407 LTMDIARS-RNHGAYGALLLIDLDNFKNINDSLGHSVGDELLRNVAKNLRNCLDEEITVG 465

Query: 611 RLSGNRFGIILI-----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
           RL G+ F +I+       E         A  +   ++ P     +E TVTAS+G A +  
Sbjct: 466 RLGGDEFTVIMPELGRTPEEAEQNANLIAAKVLSELSTPFFFNTQEFTVTASMGVALYPD 525

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
               +  +L+ A+ A++ AKH G N V  F+       S R+ I+ +L  AV++  L   
Sbjct: 526 KDANTEVILRYADTALFQAKHEGRNKVTIFKAEMADAVSKRLSIENELRTAVKDKALMFY 585

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P + + D  I+G EALI+W+HP+ G I+  EF+ + E   +I    L M  +    + 
Sbjct: 586 YQPQVSVTDGRIIGAEALIRWNHPQRGLITPDEFVPVLENSNLILTAGLDMFTQACMQVK 645

Query: 784 SWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            W D+      + + +N++ K     E  E +  ++  T      I+L  +ESVV+ N +
Sbjct: 646 EWLDKGWWEEDMRVAVNVSPKQFYQPEFVEQIIEILEATRLPAYCIELEVTESVVIQNVK 705

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900
            +   +  L+ +G+  +LDDFGT  S LSYL  +P D++K + S +T         AI+ 
Sbjct: 706 DTINKMLSLKGLGVRFSLDDFGTGYSSLSYLKRLPVDSLKIDRSFVTDINSDVNDAAIVS 765

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +I+ MA +++  ++A+ +     ++ L    CDY Q    + PL    + +LL+
Sbjct: 766 TILAMAAHLDLEVVAEGVETVEHLEFLKENECDYYQGYLFSKPLPAEEMGELLR 819


>gi|298291384|ref|YP_003693323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Starkeya novella DSM 506]
 gi|296927895|gb|ADH88704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Starkeya novella DSM 506]
          Length = 761

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 148/642 (23%), Positives = 271/642 (42%), Gaps = 25/642 (3%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G         A + +        + +       +          L  I++    +     
Sbjct: 105 GEPFIRFYAGAPLALRAGLNIGVLCLWGPEPRTLSASETEIITHLSRIIVDQFRLHEATQ 164

Query: 393 T-------GYFSQGIFS----DGERQSLAVLG----SGDIVWDWDIVRDRVTTTPDIATI 437
                      SQG+      +  R+   +      +    W++D+  +R+  +  I  I
Sbjct: 165 RTRRELEYRRMSQGLLEMQSRELWRRQSLLAQTERLAKIGGWEFDVATERLNWSDGIYRI 224

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G  + S+   ++  L +     R +F+   ++ +  R    + E     A      +  
Sbjct: 225 YGF-AQSVEPDVQLALSHFPPEARQHFQKKFEAALRNR-ESFEIELPFVDAHGNHRLVRK 282

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                 + +G++ R  G+  D+TEQK++ + +   A  D LTG+PNR    +RL   L  
Sbjct: 283 SCAVEVDGDGEL-RAFGMLQDVTEQKEAEQRMWHMANHDALTGLPNRGLMRERLEAALRR 341

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S         V+++D+D++K +ND LG   GD +LV   +R+G  +   D++ARL G+ F
Sbjct: 342 SRRSRRY-VGVLLVDLDQFKDVNDTLGHDAGDALLVEAAQRLGGCIGDVDMVARLGGDEF 400

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L   ++       A     ++ +P +     ++   SIG A         S +LKNA
Sbjct: 401 IVLLTRMDSPTDAMVAAQHALSALRLPFSYRRTVLSCRGSIGIAVAPEHGTDPSTLLKNA 460

Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++A+Y AK  G      + +   +    R+ +   + LA++N E    Y P + L    I
Sbjct: 461 DIALYRAKAAGRGVAVEYDMRMQQATEKRIQLYARVRLALKNGEFQPYYQPKVSLRSGAI 520

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EAL++W HP+ G +   EF  + ++  +  AI   +LE   RD+ +W  Q       
Sbjct: 521 VGFEALLRWRHPRRGLLGPQEFGQVFDDADLAGAIGERVLELATRDMAAWVAQGCEFG-H 579

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKI 854
           + IN++S +     L E +   +  +   P R+ +  +E+V +G   E  R  L  L   
Sbjct: 580 VAINMSSSEFTRGGLPERVLTALDNSHIQPERLAIEVTETVFLGRGTEMVRHSLQSLNHA 639

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETT 912
           G+ + LDDFGT  + LS+L   P D +K + S +          AI+R++I + +++   
Sbjct: 640 GVRIALDDFGTGYASLSHLKQFPVDRIKIDRSFVHDIEHDIDDAAIVRAVIHLGQSLGIE 699

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +A+ +        L   GCD  Q    +  L  + I  LL+
Sbjct: 700 TVAEGVETPAQAAYLRANGCDLAQGFLYSKALPASRIPALLR 741


>gi|256822028|ref|YP_003145991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Kangiella koreensis DSM 16069]
 gi|256795567|gb|ACV26223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Kangiella koreensis DSM 16069]
          Length = 1128

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 146/555 (26%), Positives = 257/555 (46%), Gaps = 10/555 (1%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            R S  +  +   V   D   +            G +     G            D D   
Sbjct: 572  RLSTGIDQNPYPVLITDTDGNIQYVNKAFIETTGFSETEAIGKNPIEFSA--EQDPDKTF 629

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             ++   +  R    + E   R  D   +     I P+ N+ G I+ Y+    DIT +K +
Sbjct: 630  KMIWRQLA-RGDAWRGELVSRRKDGSHYTEFAMIYPVRNNKGKIINYVAHKEDITLKKIA 688

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E I   +  D LTG+  R+   +RL  +LD S        TVM +D+D +K IND LG 
Sbjct: 689  EEKIHQLSNYDQLTGLLKREMLEERLQQLLDDSFKQKQA-MTVMWLDLDNFKTINDSLGH 747

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             VGD +L+ +  R+   L    I++R++G+ F  +L    N    A  A  + + +   I
Sbjct: 748  QVGDLILIEVANRLRFELGKQSIISRIAGDTFAAVLP-LTNEHSAALIAKNVLEVVQRQI 806

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703
                  ++++ SIG A   +   ++ +++  AE AMY AKH G N    F          
Sbjct: 807  KFNSHILSISPSIGLAISPNDGQSADKLIMCAETAMYRAKHDGRNTFRFFAQEMQEHSLR 866

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             + +   L  A+ N + +LVY P + L +  +VG EAL++W+HP+WG +S +EF+ +AE+
Sbjct: 867  SLQLSIALKEALTNDQFHLVYQPQMSLSNNSMVGAEALLRWEHPEWGTVSPAEFIPLAEQ 926

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I  I  ++++++A+   SW ++   P + I +N+++      +L E + +L+ K   
Sbjct: 927  SGLIVQIGEWVIQQVAQQQKSWLERGL-PEVIIAVNLSALQFHQPDLVETITSLVRKAGV 985

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             P  I++  +E+V + +PE +   +  L + G  +++DDFGT  S +SYL       +K 
Sbjct: 986  VPENIEVELTEAVALKDPEVAGTTIDALSRAGFKVSIDDFGTGYSSMSYLKKFAVHKLKI 1045

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +          AI+ +II MA ++  T IA+ +  +  +  L + GC+ +Q    +
Sbjct: 1046 DQSFIKDIVTDIDDQAIVTAIIQMAHSLHKTTIAEGVETQEQLDFLRKKGCEEMQGYWYS 1105

Query: 942  SPLGFNSILKLLKER 956
             PL      + LK  
Sbjct: 1106 RPLVTEQFEQFLKSH 1120



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 88/315 (27%), Gaps = 18/315 (5%)

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSE-IALSSSLIIFLFMYLHWNRWHAKVGYITFSGI 290
            +I +  +   V     E  I    +    ++ ++++   + L++ R  AK+    +  +
Sbjct: 95  HTISYQGMPDFVTPSGPEKAINFWLAARFTIAFAILLVATITLNFERKLAKLSRYFWLAL 154

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI----- 345
             + +     ++     +     +    +  +     Y  +  Y  A  L    +     
Sbjct: 155 TLMTVGLFHFWFLYFPDSVPDTYSNVEGLTQFKVISEYLLIGLYLVAAFLFINQLNNIRE 214

Query: 346 LIFIWFIGLWMAITK---RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
               W +   + +               L   +  I  +  F+ +   L           
Sbjct: 215 FGANWLVAAAITMAMSEFFFTLYANVSDLYNLIGHIYKIFAFSFLYRALFVEAIQSPFMK 274

Query: 403 DGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
             +   + S  +    D++ + D   + +        +L      + G   N    +   
Sbjct: 275 MSQLQSKLSATLNALPDLLIEVDAKGNYLDIHSANPELLLRREEKLIGS--NIKEIMDKE 332

Query: 460 DRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +       +++     R    + E +V           + I            ++ ++ D
Sbjct: 333 NAKRCMQAIETAGQIGRSQGTRIELQV--PSG-VRTFELSISRKKGHLDQPSTFLILSRD 389

Query: 519 ITEQKKSLEGILCNA 533
           IT      + I   A
Sbjct: 390 ITSTINIEQHIAHEA 404


>gi|307153628|ref|YP_003889012.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306983856|gb|ADN15737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 709

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/564 (24%), Positives = 260/564 (46%), Gaps = 28/564 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q    D  R +     S + + + +         P            +       L   
Sbjct: 157 EQFQQDDLTRLASFPELSPNPIIEINFQGKITYINPAAY---------LKFSNLQELQLS 207

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H         IL   +   +   Q    +R    +       +  + N+           
Sbjct: 208 HP--------ILSDLLEQSKNT-QGNLLLREVQVEEQVFEQYVHYLPNNK----LIRSYI 254

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE+K S + +   AF D LTG+PNR  F  +L   L  +     +   ++ +D+D +
Sbjct: 255 FDITERKHSEQQLKYQAFHDLLTGLPNRAWFNQQLNLALSNAKRQQ-VPLAILFLDLDGF 313

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG + GD VL +  +R+   ++  D + R  G+ F I+L    +S      A  
Sbjct: 314 KNINDTLGHSFGDQVLQNFAKRLTGSIRAGDTVCRWGGDEFVILLPYVPHSEDTIKLAQR 373

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           + + +  P  + +++  +  S+G A +      +  +LKNA+ A+Y AK RG NH + + 
Sbjct: 374 LLEILKQPFEIQKQQFYIKTSMGIALYPHDGEDAETLLKNADAALYRAKERGRNHYQFYS 433

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++S  S  + ++  L  A++N EL L Y P + L   EI G+EAL++W HP+ G +S 
Sbjct: 434 STMTSKASLVLKLENLLHQALDNEELSLHYQPQVNLKTGEITGMEALLRWYHPELGQVSP 493

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++ + +AE+  +I  I  ++L       ++W+      P+ I +N + +      L   +
Sbjct: 494 AKLIPLAEQTDLIIPIGQWVLHTACEQSLAWQKSGLK-PMPIAVNFSPRQFQQPNLVSMV 552

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T + P  +++  +ES +M N + +R  L  LR++G+ ++LDDFGT  S LSYL 
Sbjct: 553 TEVLQETGFPPDLLEVEITESTIMQNEDFARQALQELRQMGVHISLDDFGTGYSSLSYLQ 612

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PF+T+K +   +   +   + +AI+ ++I +  +++  +IA+ +     ++ L R+ C
Sbjct: 613 KFPFNTLKIDQCFIQSLSDRPQDLAIISAMITLGNHLQLRVIAEGVETLQQLELLQRLHC 672

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           + +Q    + PL      KLL++ 
Sbjct: 673 EEVQGFWFSRPLKAEDATKLLEQH 696


>gi|298486489|ref|ZP_07004549.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158966|gb|EFI00027.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 636

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 151/583 (25%), Positives = 272/583 (46%), Gaps = 27/583 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 62  QSALEASKEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 121

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 122 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 172

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 173 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 231

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + +    
Sbjct: 232 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 291

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 292 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 351

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 352 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 411

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           +HP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 412 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 471

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 472 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 531

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 532 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 591

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPLVKN 962
              +  L R+GC   Q    + PL        LLK++F    +
Sbjct: 592 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKQQFQETAS 634



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R +  + +  R+  LQ  +R +  +     +  R R   N +G  ++  G   DIT+Q 
Sbjct: 1   MRAVYAAALENRQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGTVLDITQQC 60

Query: 524 -----KSLEGILCNAFQ---DNLT 539
                ++ +     AF    D++T
Sbjct: 61  VQSALEASKEKFAKAFHSSPDSIT 84


>gi|46202415|ref|ZP_00053248.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 787

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 154/563 (27%), Positives = 255/563 (45%), Gaps = 14/563 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                    S AV  S   V                A I G     + G     L  ++ 
Sbjct: 230 KAEDSVRLLSQAVEQSPVAVAVVGGDAVVQYVNSAHAAITGYPQAQVVGKP---LSGLYP 286

Query: 459 NDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 R+ LD         G  Q E  VR  D    W  +    ++   G    Y+   
Sbjct: 287 ---GKARSTLDDLWRSLLTLGEWQGEVHVRRQDGAGQWQRVHGSKVATPGGGGTHYLLQI 343

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+T +K     +   A  D LT +PNR   LDRL+  +DL+   +  +  ++ +D+D++
Sbjct: 344 EDVTLRKDQERRLQHQAMFDGLTDLPNRVQALDRLSREIDLARERER-KVALLFVDLDEF 402

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD++LV  + R+ +       +AR  G+ F +IL    +       A  
Sbjct: 403 KAINDSLGHEYGDELLVLASERLRKAAGDGGTVARFGGDEFLVILGDLEDGATPQRVAAG 462

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           + +  + P  +  R++  TASIG A +     T   +L+NA++AMY AK  G N    F 
Sbjct: 463 IVERFSRPFAISRRDLIATASIGLAIYPDDGHTPQTLLRNADIAMYQAKLAGRNRFCFFT 522

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            R++     R+ ++ +L  AV   + +L Y P++ +     VG+EAL++W +P+ GN+  
Sbjct: 523 SRMNEEAEARLRMEGELRRAVGTDQFHLAYQPLVDVKSGRAVGVEALLRWSNPELGNVPP 582

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AE   +I AI   +LE   RD   W D      + + IN++ +   D      +
Sbjct: 583 DRFIPQAETCGVIVAIGRMVLETACRDARRWVDA-GHADLRLCINVSPRQFQDAGFLGHV 641

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A ++ +  SP+ ++L  +E +++       +LL  L  +GI L++DDFGT  S LSYL 
Sbjct: 642 RAALAASGLSPANLELEITEGLLLTERGDVDVLLRALTDMGIQLSIDDFGTGYSSLSYLE 701

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFDT+K + S M G    ++R  ++ +I+ MA  +   +IA+ +     +  LT + C
Sbjct: 702 RFPFDTLKIDRSFMIGMLERQERKVLVETIVAMASGLGLKVIAEGVETVEQLAHLTAINC 761

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D  Q    + P+    I  LL+ 
Sbjct: 762 DIAQGYLFSRPVPATEIPPLLER 784



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 6/114 (5%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D+++  D     +  +P+   + G +   + G        ++   R   R    + +  
Sbjct: 6   PDVLYSIDADGCFIWVSPNAEAVFGYSPLELIGTPAA---RMYS--RPELRAETATRIRE 60

Query: 475 RRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            RGR ++ E  +R  D    W  I      ++ G      G   DITE  ++ +
Sbjct: 61  ARGRAVRAEMEMRRKDGVSIWTAIYACAHFDAEGGFAGINGAIRDITEVWQTRK 114



 Score = 45.7 bits (107), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 10/134 (7%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R       + + +         +       T+       +          I   
Sbjct: 116 LEDSEDRFRRLSDVATEAI-CIHFEGKIIDMNKAFETLFAYPRDELLTMWA--WDVIDPR 172

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D    ++++            YE R    D     M I  +      G+    +    D+
Sbjct: 173 DIGLAKSMVAQQYEAP-----YEVRGIRKDGSVFPMEIYSKHSWM--GEKSVRVTSIRDL 225

Query: 520 TEQKKSLEGILCNA 533
           T+ KK+ + +   +
Sbjct: 226 TQSKKAEDSVRLLS 239


>gi|257485508|ref|ZP_05639549.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320329233|gb|EFW85230.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330987413|gb|EGH85516.1| sensory box protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010684|gb|EGH90740.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 729

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + +    
Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 385 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           +HP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 505 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 684

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  L R+GC   Q    + PL       LL +R 
Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 721



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R  LA+  +    WD DI  +R+  +   + + G+A+       R +   
Sbjct: 26  AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +R   R +  + +  ++  LQ  +R +  +     +  R R   N +G  ++  G 
Sbjct: 86  LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145

Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539
             DIT+Q      ++ E     AF    D++T
Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177


>gi|148258851|ref|YP_001243436.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Bradyrhizobium sp. BTAi1]
 gi|146411024|gb|ABQ39530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bradyrhizobium sp. BTAi1]
          Length = 1047

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 136/613 (22%), Positives = 261/613 (42%), Gaps = 21/613 (3%)

Query: 344  WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                      +  A   R  N I +P   GG V        T ++ +       Q    +
Sbjct: 437  RAAAGGTSQMVIEAGAGRFLNVIDKPLATGGWV--------TTLEDISEHRKLEQERDRN 488

Query: 404  GERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                   +      +   D+  R  V          G     + G        +     +
Sbjct: 489  YAFLREIIDHIPSPIMVKDVQDRRYVLVNKSSERCFGRPCEQIVGK--TLFDLMPRPIAE 546

Query: 463  NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                  D  + +  G +  E   +       ++  R   +++        I +  D TE+
Sbjct: 547  KAAADDDRALEHADGLVLEEHPWQTPGLGLRYITSRRIVVTDDRQRPRYLINVIEDTTER 606

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            + + E I   A  D LT +PNR  F +R+   ++ +     +   ++ +DID++K IND 
Sbjct: 607  RLADERIAHLAHYDALTELPNRVLFRERIAHEIERAR--HGMFFALLYLDIDEFKGINDS 664

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG  VGD++L ++  RI   L   D +ARL G+ F ++L    +  ++      + + I 
Sbjct: 665  LGHHVGDELLRTIASRIRSCLAPEDTVARLGGDEFAVLLTMAADRDEVIAKVTEILERIR 724

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
             P   L  +++  ASIG A      +   ++ K+A+LAMY AK  G +    F  +    
Sbjct: 725  EPYRCLGHQLSTDASIGIALAPEHGVEIDQLTKHADLAMYAAKADGRHTFRFFEPAMDES 784

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +R+ +++DL  A+   +  L Y P++   +  + G EAL++W HP+ G +   +F+ +
Sbjct: 785  ARERLQLQQDLRRAITEGQFELHYQPLLGFRENIMTGCEALLRWRHPERGMVPPLDFIPL 844

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AE+  +I  I  +++     +   W        I + +N++   L    L   + + +S 
Sbjct: 845  AEDTGLINEIGDWVMRTACAEAAHWPS-----DIRVAVNVSPIQLKSPTLALHVASALSA 899

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               +P R+++  +E+V++G+ + +  +L +L  +G+ + LDDFGT  S LSYL   PFD 
Sbjct: 900  AGLAPERLEIEITEAVLIGDDDVALDILHQLHAMGVRIALDDFGTGYSSLSYLKRFPFDK 959

Query: 881  VKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +K +   ++        AI+++++ +A     T  A+ +        L ++GC  +Q   
Sbjct: 960  IKIDRCFVSDIGADSSSAIVQAVVSIAAASNMTTTAEGVETGAQQTALRQLGCTEMQGYL 1019

Query: 940  VASPLGFNSILKL 952
             ++P     + KL
Sbjct: 1020 FSAPKPAAELRKL 1032



 Score = 45.7 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 54/195 (27%), Gaps = 42/195 (21%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            R    ++  A      +I ++    + Q +       Q +  + +R   A+      + 
Sbjct: 319 WRSQVVLLVGAATLAAGVIAVMFSLMIRQILRQNRIARQQLEGEKQRVETALDNMTQGLI 378

Query: 420 DWDIVRDRVTTTPDIATILGLA-------------------SGSMHGPIRNWLPYIHIND 460
            +D     V        +LGL+                    GS +G + ++   IH  D
Sbjct: 379 SFDADACVVMFNRRFIDMLGLSTDVIRPGVHLTEVIAHCKAQGSFNGDVADFCTAIH--D 436

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R          +    GR                       + +       ++    DI+
Sbjct: 437 RAAAGGTSQMVIEAGAGRFLN--------------------VIDKPLATGGWVTTLEDIS 476

Query: 521 E-QKKSLEGILCNAF 534
           E +K   E     AF
Sbjct: 477 EHRKLEQERDRNYAF 491


>gi|330505615|ref|YP_004382484.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919902|gb|AEB60733.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 959

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 150/955 (15%), Positives = 323/955 (33%), Gaps = 39/955 (4%)

Query: 25  MVSPSFAIEPINISSSDRVLDLTSITRI-----YVNQGEDFQVFTAADIDGISRRI--EV 77
           +  P++A   + +       DL     I       +                  R     
Sbjct: 16  VTLPAWAGSALPLLKLS-AADLARPVSIEHSLLLEDPSGQLSASEVLQRIEQEGREVQGT 74

Query: 78  SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137
           +         W    L      +L+ +I      L     +  D         + +    
Sbjct: 75  ARIGYTRSAWWLAVQLQTPPAERLQLII--GQTFLDDLEVWLFDGEQSLGPLYSGANRAF 132

Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDTVNSFTLYRGII 195
            +R       +  +        + ++ + + +     + L      +  +    L  G++
Sbjct: 133 SERGEPYPQFLLNLPRLDDGPHSLLLRVQSHSAINLPLQLVGAEHGQQLIAHSWLQSGLL 192

Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRA 255
           IGV   LA++  + Y   R + L      +  V  Y +  +     L         +   
Sbjct: 193 IGVLIALALYYMVKYSTLREAQLAYFSLTSLCVALYNASLYNLAGLLWPQWPLLPKLLIN 252

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
                +     +F+   L       ++ ++  +  A   ++           A      L
Sbjct: 253 LPTAGMMIFSSLFIASALGL--HLGRLRWLRDALFAATLLVCMGGLLVEHPAAYQTLNLL 310

Query: 316 ASIVLYY-TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
                 Y    ++    +    A   +  W    +  + + ++    +       AL   
Sbjct: 311 TLATGLYQMLLMVLGIAQRRPYAPGYLLCWSAALVLMLLVPLSRAGLIPLPAGFYALYAY 370

Query: 375 LVLIVILIGFTVIQHVLATGYF-----SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           L  + +L+   ++   L                + E+       SG+ ++        + 
Sbjct: 371 LPALSMLLFGALLDKQLERVRRVLLSSQAQAIDNLEQYQALFRHSGEGIFRCHRDGRLLE 430

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P +A +LG                +     +     L   +  + G +  E  +    
Sbjct: 431 ANPSLARLLGSEPLPSDLDNLPLQRLL----GETQWRALLRQLDEQAGTVSCECELYDLA 486

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            +  W+ + +    + +       GI  D++E++   E +   A  D LTG+ NR+    
Sbjct: 487 QRPRWIYLSLHLRPHQD----FIEGIVVDLSERRALEERLQSLAAHDALTGLLNRRELER 542

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L+  L  +A        ++++ +D++K++ND+ G + GD +L  L  ++   L     L
Sbjct: 543 LLSETLSGTAKRRFSH--LLLLGLDRFKQVNDLFGHSAGDQLLRQLAGQLQHQLPRHAEL 600

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           AR+ G+ F ++L   +++  +       R           R   +  SIG  + +S    
Sbjct: 601 ARVGGDEFAVLLREVDDAAALEQAEQLRRAVEQFVFTWQGRPFRLHVSIGMLALSSGVRD 660

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYH 725
               L  A  A   AKH+G N V+ F  +         ++     L  A E     L + 
Sbjct: 661 WETALNWASSASQLAKHQGRNRVQQFNPADGALLEHQRQLQWITRLREATERGHFELFFQ 720

Query: 726 PIIR-LMDEEIVGLEALIQWDHP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           P+         +  E L+++  P     IS ++F+  A     + AI+ ++++ +   + 
Sbjct: 721 PVQALQSTAAGLHYEVLLRYHDPHSGEWISPAQFLDAAARYDFLGAIDRWVIQHLCAWLA 780

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +           + +NI++  LLD      +Q  + +    P ++ +  +E V +G    
Sbjct: 781 ANPRHLAQLA-QVNVNISASSLLDCGFHRLLQDELQRHGLPPGKLCIEVTEMVALGELGV 839

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901
           S   +  LR  G+ + LDDFG+  +  +YL ++P D +K +GS +          A++ S
Sbjct: 840 SAQWIEELRGKGLKVALDDFGSGFASYAYLRHLPLDILKIDGSFIRDIEHDPINQAMVGS 899

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  +A  +    +A+ +  +  +  L R+G DY Q   V  P     +    +  
Sbjct: 900 MRQIAAQLGLVTVAEFVETQASLDCLRRLGIDYAQGYFVGRPQPLRQLADDARRH 954


>gi|229106157|ref|ZP_04236711.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228677275|gb|EEL31598.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 827

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 156/759 (20%), Positives = 302/759 (39%), Gaps = 30/759 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    S+  
Sbjct: 81  ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +  H  +  +       +  +   +           Y ++  +  +  L   
Sbjct: 137 YLYFYLQDDLSHRSLILLRCLYRVFLLFIAIAATIPRSASSRRNYFIINPTFGKKLLVIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I    K    +  LI    + F++ +   + +  +  +      L   L + 
Sbjct: 197 PYLAVAILIGFTFKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKD------LTETLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NTQLEQKVYQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGIVLNINQSGSVLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  +  + G            D+      L    G        + RV+  + +       
Sbjct: 311 GKDNAELIGKEC--FSIFLDEDKSELEVALKE--GQLCSSSSLQLRVKNNNEKDIHFWYV 366

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                   G       +  DIT  K+  E I   AF D +T I NR  F   L   ++  
Sbjct: 367 TIVPIMIEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIERV 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG A+GD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHAIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +      +  +L++A+
Sbjct: 486 IIVHNKT-EQQLLDLCETLFRITEKPFVVNQHSFYLSLSIGIALYPFGGTNAKTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 545 IAMYSAKEKGNNTVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQQACRQLKEWHSA-GCTNLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANLIDLELTERIAMVDEKETLSKLKALKSYGV 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIATSNDGDEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 784 AEGVETKEQLTVLQQNACYLIQGYYYSKPINEDEFINFL 822


>gi|46201190|ref|ZP_00055588.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 689

 Score =  507 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/569 (25%), Positives = 265/569 (46%), Gaps = 13/569 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E   LA       G+ +   D  R  +        + G ++  M G   + L  
Sbjct: 127 ARKQAEESLRLAATVFETVGEAIVVTDGQRRILAVNDAFERMTGWSAAEMVGQSCDLLAV 186

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             I  R+    +    +    G+   E   R  +++     + +  +    G   R++ +
Sbjct: 187 EMIGLRE-VDEMWR--LAAGTGQWSGETWTRRKESEPFPAALALTAV--DQGIDGRFVLL 241

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT +++  + I  +A  D LT +PNR + ++ L   +  +      R  V+ +D+++
Sbjct: 242 LRDITRKRRDEQRIRFHASHDALTRLPNRHTVMEALGESIVRADQTGE-RLAVLYLDVNR 300

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  VGD++L  + RR+   ++  D++ RL G+ F ++L S  +       A 
Sbjct: 301 FKDINDSYGHGVGDELLRQVARRLKSCVRASDVIGRLGGDEFVMLLPSVGDHSAAQACAN 360

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  + A P ++   ++    SIG A +      +  +L  A+ AMYHAK  G       
Sbjct: 361 KVLYAFAEPFDMEGLQLFAGTSIGIALYPDDADGAESLLSRADAAMYHAKRGGLPYSCFD 420

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +    ++RV ++ DL LA+   +  LVY P +  +   IVG EALI+W HP   ++S 
Sbjct: 421 IEMDRQVAERVSLENDLRLALGEDQFRLVYQPKVDALSGAIVGAEALIRWRHPMRSDVSP 480

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I AI+ ++L    R +  WR      P  I +N++     D  L + +
Sbjct: 481 GLFIPVAERAGLIGAIDDWVLVEACRQVAEWRAAGLNLP-SISVNLSPAQFHDGRLKDKV 539

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A ++ +  SPS ++L  +E+++  + +R+  +LG+L  +G+ ++LDDFGT  S L+YL 
Sbjct: 540 KAALADSGLSPSVLELEITETMMASDVDRAIEILGQLSALGVRVSLDDFGTGYSSLAYLK 599

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P  T+K + + +T      K  AI+ S+I +A N+  ++IA+ +        L   GC
Sbjct: 600 LFPVSTLKIDRAFVTELPGNAKDGAIIASVIALAGNLGFSVIAEGVETRDQAAFLAARGC 659

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961
             +Q    + P+   +   LL     L++
Sbjct: 660 PVMQGFLFSRPVNAATFAALLSNPEGLIR 688



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDN 463
                  + + ++        +   P +A I G      +   + +    ++    DRD 
Sbjct: 14  YRSLFENAVEGIYRTTPDGRYLDANPALARIYGYKDPAELIAGLTDIARGLYVDPADRDR 73

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           FR      +        +E RVR    +  W+    R +++    ++ Y G   +IT +K
Sbjct: 74  FR----EILARDSVVSNFEARVRTRSGEIIWIAENARAVTDGRDRLVCYEGTVQNITARK 129

Query: 524 KSLEGILCNAF 534
           ++ E +   A 
Sbjct: 130 QAEESLRLAAT 140


>gi|325272366|ref|ZP_08138764.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324102491|gb|EGB99939.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 621

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 149/622 (23%), Positives = 283/622 (45%), Gaps = 15/622 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGY 395
           A+ ++ + + + +  + L       L   + +   V   VL   +LI  + ++ +   G+
Sbjct: 3   ALYVVLSILWLVLAEVMLQSMTDDPLALTVGRQINVVVWVLCSALLIYLSRVRLLHFIGH 62

Query: 396 FSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451
            ++    D ER  +A      + + V   D     V        I G     + G     
Sbjct: 63  GARLRCEDRERLRMAAAVFDSTLEGVLVTDRQGLIVHVNRAFMRITGYQQHEVIGQRPSK 122

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +    H      F   + + +  + G    E   R    + +     I  + +  G++  
Sbjct: 123 FKSGRH---GQAFYQQVYATLAEK-GEWSGEIWNRRKSGEIYPQWQTICAIHDDEGELSH 178

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ + +DI+  K S + +   A  D LTG+PNR  F DR+   L  +  +      ++++
Sbjct: 179 YVAVFSDISAIKHSEQELAYLAHHDPLTGLPNRLLFNDRVEQALAAAQANKRG-CALLLL 237

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D ++ IND LG  +GD +L  +  R+G++L     LARL G+ FG++        +  
Sbjct: 238 DLDHFQSINDGLGHTIGDQLLRLVGERLGKILGNGVTLARLGGDEFGVLAEGCQQVGQAG 297

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + + +  P       + ++ S G + + S  + + ++L+NA+ A+Y AK  G   
Sbjct: 298 KLAQGIIERMREPFLFDGHRLFISVSAGISLFPSDALCAEQLLRNADSALYKAKGNGRAC 357

Query: 692 VESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +        +  ++   +L  A+E+ EL + + P+  L    +VG+EAL++W HP+ 
Sbjct: 358 YALYTEELTAHAQHRVETAGELRRALEHDELRVFFQPVHDLATGSLVGVEALVRWQHPQR 417

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ IAE   +I  I+ ++L +  R ++ W+ Q      F+ +NI+S+    +E
Sbjct: 418 GLVPPGEFIPIAERTGLIAEIDAWVLRQACRQMVQWQAQGRQLA-FVAVNISSRLFGQHE 476

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++  T  +P+ ++L  +ES VM +PE +   L RLR++G++L +DDFGT  S 
Sbjct: 477 LYRQVADVLHDTGLAPALLELEVTESAVMEDPEVALEQLHRLRELGVTLAIDDFGTGYSS 536

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +P   +K +   + G    E  IAI+R II +A+++   + A+ I        L
Sbjct: 537 LLRLKRLPVQKLKIDQGFVAGLPLDEDDIAIVRVIIALARSMGMQVHAEGIEQAEQAAFL 596

Query: 928 TRMGCDYIQDSHVASPLGFNSI 949
            +  C   Q      P+    +
Sbjct: 597 LQQQCQLGQGYWFGRPVPAADL 618


>gi|85374282|ref|YP_458344.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
 gi|84787365|gb|ABC63547.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
          Length = 740

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 145/569 (25%), Positives = 265/569 (46%), Gaps = 21/569 (3%)

Query: 402 SDGERQSLA--VLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +D  R SL      +     W  D     +  + + A   G ++  + G   + L  +  
Sbjct: 27  TDPRRLSLLDDFESADLGWFWATDSESKLIYLSENAAAQFGCSADELIGKPLSELFILER 86

Query: 459 NDRDNFRTI----LDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRY 512
            + +         L   +  R        R+    +D++  W  I  +P  + NGD+L Y
Sbjct: 87  GEEEKGEQSPQRPLPFLLRARNTISDLPVRISIGESDDRKIWWSISGKPQLDGNGDLLGY 146

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            G A DIT  +++   +   A  D+LTG+ NR     RLTT L            +M++D
Sbjct: 147 RGSAKDITAVRQNQLEVGRMAQYDSLTGLANRHRMTKRLTTTLTAYKAAKR-SCALMMLD 205

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K++ND LG   GD++L  + +R+  ++     + RL G+ F +IL    +  ++ +
Sbjct: 206 LDRFKQVNDTLGHPAGDELLKQVGQRLERIIGGNGEIGRLGGDEFQVILPDIEDRGRLGE 265

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + I+ P ++      +  S+G A      I + E++  A+LA+Y AK  G    
Sbjct: 266 VAARVIQMISQPYSIDGARAIIGTSVGIAIAPYDGIDTEELVGAADLALYAAKGGGRGQY 325

Query: 693 ESFRVSSF--RSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +          R  I+EDL  A+   + L + Y P++      +   EALI+W+HP+ 
Sbjct: 326 RFYSSELKDGARHRREIEEDLRDALSMDQGLEMHYQPLVDAKTHRVKCFEALIRWNHPER 385

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  +F+ +AE+   I  +  ++L R+  D  SW        I + +N+++    D  
Sbjct: 386 GWISPGDFIPVAEDTNQIGDLGEWVLRRVCTDASSWP-----GDISVAVNVSAVQFGDPN 440

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +   +  +   P R++L  +ESV +G+P  +  +   L+K+G++L LDDFGT  S 
Sbjct: 441 LPQIVCKALKDSGLDPRRLELELTESVFIGDPNATHDMFVALKKLGVALALDDFGTGYSS 500

Query: 870 LSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           L YL   PFD +K + S + GS        AI+ +I+ +A  +  T +A+ +    +++ 
Sbjct: 501 LGYLKNAPFDKIKIDQSFVRGSTENDNNNSAIITAIVSLAGALNMTTVAEGVEAMDELEL 560

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   G  YIQ    +  +  + +L+ L+ 
Sbjct: 561 VRERGATYIQGFIFSKAIPQDVVLEKLES 589


>gi|121997152|ref|YP_001001939.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121588557|gb|ABM61137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 819

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/637 (22%), Positives = 260/637 (40%), Gaps = 17/637 (2%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
                     + G+  A L+   +           + +    + + I       +     
Sbjct: 187 IVYANATAGTLTGHSPAELIGQDFGFPVATGSPAEIELHTSGNGNRIVEMRARTMRWEGK 246

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
                 +  V       + +       ++    + + V   D   + V        I G 
Sbjct: 247 PAFVLNLHDVTERKRVERELRQA----AIVFEEAREGVIITDAEANIVAVNHAFTQITGY 302

Query: 441 ASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                 G    +L    H           + S      G    E   R  D      +  
Sbjct: 303 DEDQALGCNPRFLASGFHTPAFYQAMWEAIRSH-----GYWTGEIWNRRNDGTTFAELAT 357

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           IR + + +G    YIG+ +DI+  K+    +      D LT +PNR  F DRL   L   
Sbjct: 358 IRELRDESGRPTHYIGVFSDISRIKEYQTQLERVLHLDPLTELPNRLLFHDRLEQALRQH 417

Query: 559 ATDDNLR--PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      V+V+D+  ++ +ND LG A+GD  L  +  R+   +     +ARLSG+ 
Sbjct: 418 QRQRTNENAVAVLVVDLSDFRAVNDSLGHAIGDRTLRIVGERLDSAMGDSATVARLSGDE 477

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG++L     +   A  A  + ++   P+ +   +I +T  +G +++      ++ +L+ 
Sbjct: 478 FGVLLPQLATADDAASAAERLIEAAEAPLEIDGHQIPITLRVGLSTFPDQAQGANVLLEQ 537

Query: 677 AELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           A+ AMY AK  G      S  ++    +R+ +  +L  A+   EL L + P + L     
Sbjct: 538 ADAAMYEAKSEGVSYRFFSEELTERARERIELGAELRQALAGEELALHFQPQVDLDSGRW 597

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +GLEAL++W HP+ G IS   F+ +AE   ++  +  ++L+R  R   +  D        
Sbjct: 598 IGLEALLRWPHPRRGPISPGRFIPVAERTGLMCQLGAWVLQRACRQYQTLLDAGQDWG-R 656

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI + +L D    E +   + +T  +  R++L  +ES+++   ER    L  LR+ G
Sbjct: 657 LAINITAPELADPTFVERVMRTLEETGLAAERLELEITESLLVNTDERIIERLDALRRHG 716

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913
           + + +DDFGT  S LSYL  +P D +K + S +    +  +   I R+I+ + +++E  +
Sbjct: 717 VRVAVDDFGTGYSALSYLKDLPVDRLKIDRSFIDNVDQPSRGATITRAILALGQSLELEV 776

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           IA+ I  E   + L   GC   Q   +A P     + 
Sbjct: 777 IAEGIETEAQRRTLQEAGCLQGQGFFLARPAPLEQLR 813



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 41/175 (23%), Gaps = 25/175 (14%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG--YFSQGIFSDGERQSLAVLGSGDIV 418
            +          G     V ++     Q                   +    +  + + +
Sbjct: 119 FISRSFAVTDATGHYKQSVHILEDVTEQRRREHRLSVAESRAREREHQLDRVLSNTAEGI 178

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
              D     V       T+ G +   + G    +                          
Sbjct: 179 LVVDEHGRIVYANATAGTLTGHSPAELIGQDFGF---------------------PVATG 217

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              E  +  + N    + +R R M    G     +   +D+TE+K+    +   A
Sbjct: 218 SPAEIELHTSGNGNRIVEMRARTMRWE-GKPAFVLN-LHDVTERKRVERELRQAA 270



 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTIL 468
           A+    + V+  D     +      A   GL           W  + H +    + R  +
Sbjct: 34  ALDAISEPVFIHDEHYRILAANRAYAERAGLTPEEFRQRP-YWEVFPHGDGPLPSCRAAM 92

Query: 469 DS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           D      +R  R +    +     +    I R   ++++ G   + + I  D+TEQ++  
Sbjct: 93  DQGGCGQHRNHRGEITEELALPSGEVF--ISRSFAVTDATGHYKQSVHILEDVTEQRRRE 150

Query: 527 EG 528
             
Sbjct: 151 HR 152


>gi|27375707|ref|NP_767236.1| hypothetical protein bll0596 [Bradyrhizobium japonicum USDA 110]
 gi|27348845|dbj|BAC45861.1| bll0596 [Bradyrhizobium japonicum USDA 110]
          Length = 833

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 158/800 (19%), Positives = 308/800 (38%), Gaps = 46/800 (5%)

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239
            +   +        I  G+ +   +   +                   +   + +  G  
Sbjct: 43  AWARLIWVAIAGAAIGYGIWATHFV--AMLAYEPGVPTNYGLVLTVLSLAAAMILTSGGF 100

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFS--GIACIA 294
              VN               A  +S+       L       W   +  I+     +   A
Sbjct: 101 GVAVNNSGQWRAAAGGGIIGAGIASMHYIGMWALEVPGRVTWSPGLVLISIGLGMVLGYA 160

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL----LIPAWILIFIW 350
            L     +        A   L ++ +   +F     ++      L    L  +   + + 
Sbjct: 161 ALAVALGHKDKWGT-FAAALLLTLAIVSHHFTAMGAVQIVPDPTLASDTLSLSPTFLAVA 219

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
             G+ +++       ++    +         I   +           Q I     R   A
Sbjct: 220 IAGVALSVLGMSFVGVLADRRLATRTSRFEQIISELSLARQQVEDSQQEIQEQKLRLDTA 279

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH------------I 458
           +    + +  +D  +  V      A +  L    +     +     H             
Sbjct: 280 INNMVEALCMFDAEKRLVVCNERYARLYQLPPELLRTGTPHADIIRHRVVTGILKSDTSE 339

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              + F + L +           EF     D +   +    +PM+        ++    D
Sbjct: 340 GAAEQFLSKLAALPFDAVSSRIDEF----TDGRLICV--TRQPMAGG-----GWVATHLD 388

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TEQ++S   I   A  D LT +PNR    +R+   + ++  +  L   V+++D+D++K+
Sbjct: 389 VTEQRRSEAKIAHMAQHDALTDLPNRVLLRERMEHAIAVT-RNGGLDLAVLMLDLDRFKE 447

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L ++  R+ E      ++ARL G+ F +I    N +++ A  A  +R
Sbjct: 448 VNDTLGHPTGDSLLRAVATRLRECTTETALIARLGGDEFAVIDYVTNPAVEAAALAENIR 507

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K++  P +L +  +TV  SIG A        S  ++K+A+LA+Y AK  G      F   
Sbjct: 508 KALCEPFDLGDHRVTVGTSIGIAIAPRDGNDSDVIMKSADLALYSAKSGGRGAFRFFEPE 567

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     ++ D+  A+   +  L Y P +     ++ G EAL++W HP+ G +  SE
Sbjct: 568 LDELMHARRNLERDMRDAIVGRQFELHYQPFVSPATGKVNGFEALLRWHHPQQGLVMPSE 627

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  ++L     +   W      P + I +N++       EL   +  
Sbjct: 628 FIPLAEETGLIVPLGEWVLRAACAEAAKWP-----PHVRIAVNLSPAQFRSKELVPVVIG 682

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +  +P R++L  +E+V+M + E    +LG+LR++G+ + LDDFGT  S LS+L   
Sbjct: 683 ALASSGVAPHRLELEVTETVIMHDSEAVFAVLGQLRELGVRIALDDFGTGYSSLSFLQKF 742

Query: 877 PFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           PFD +K + S +   +  R     + R+++  A ++  T  A+ +  +  +  L   GC 
Sbjct: 743 PFDKIKIDRSFVNELSSARAEARHLARAVVRFAVSLGKTTTAEGVETKEQLDILCEEGCL 802

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q  + + P+  + I ++L
Sbjct: 803 ETQGYYFSRPMPASDIARML 822


>gi|95930717|ref|ZP_01313450.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfuromonas acetoxidans DSM 684]
 gi|95133197|gb|EAT14863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfuromonas acetoxidans DSM 684]
          Length = 888

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 243/492 (49%), Gaps = 35/492 (7%)

Query: 499 IRPMSNSNGDILRYIGIA---------------------------NDITEQK--KSLEGI 529
             P+ + NG++L  + +                             +I+EQ+   + + +
Sbjct: 397 GTPIRDHNGEVLGVLSVLSRGKIKSLERAKDVLAIMAARVSAEIEREISEQRLRDNEDHL 456

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               + D LT +PNRQ F DRL   + +++   + +  V+ ID+D +KKIND LG  VGD
Sbjct: 457 EYLVYHDVLTDLPNRQLFRDRLQHAISMASLGQH-QVGVLFIDLDHFKKINDSLGHEVGD 515

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  + RR+   +   D +ARLSG+ F IIL   NN   +   A  + + +A  + +  
Sbjct: 516 RLLCEVARRLRLCIGGLDTVARLSGDEFAIILDQLNNIENVILIAQEVNRRLAEMMVVEG 575

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
            ++ +TASIG + +         +LK A+ AM+ AK  G ++   +    +   S+ + +
Sbjct: 576 YKLFLTASIGISLYPGDGKDVVSLLKCADAAMFKAKELGRDNYRFYTAGLNERASELLAL 635

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  AV+ + L + + P + L    I+G EAL++W HP+ G IS  +F+ +AEE  +I
Sbjct: 636 EGALRQAVDKNHLVVYFQPQVELASRRIIGAEALVRWQHPENGMISPVDFIPMAEETGLI 695

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            +I  ++L +       W+  A  PP+ I +N++++     +L   ++ ++ +T  SP  
Sbjct: 696 VSIGEWVLRQSCLQARQWQ-VAGYPPMRISVNMSARQFRQKDLVPMVRRILQETGLSPEY 754

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES++M + + +   L  L  +GI L++DDFGT  S L+YL   P   +K + S 
Sbjct: 755 LDLEITESILMNDVDGAVERLVELHSLGIQLSIDDFGTGYSSLAYLKKFPIQYLKIDRSF 814

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          AI  ++I +A+N+   +IA+ I  +   + L   GC Y Q    + P+ 
Sbjct: 815 VRDVIIDPNDAAIATAVIDLARNMNLNVIAEGIEQQDQHQFLLDRGCGYGQGYLFSRPIP 874

Query: 946 FNSILKLLKERF 957
            +   +LL  + 
Sbjct: 875 AHEFEQLLVRQQ 886



 Score = 47.6 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 5/158 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +    +    ++              D E       +    + V+  D+    +      
Sbjct: 144 MAETALHLFAMRAAAELERIKIERQRDEELHFLQSLLDAIPNPVFYKDLDSRYLGCNRSY 203

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        +    R       D+ V        YE  +   D+    
Sbjct: 204 EDLLRKSRQDIIGHRAA--DVMPPL-RAVVAIREDNKVYDSALSRTYESTIEEPDHGTMQ 260

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           ++    P  + +G++   +G   DI+  ++    +   
Sbjct: 261 VLFNKAPFFDQDGELAGLVGTIQDISSLREMQSAMQSL 298


>gi|297160240|gb|ADI09952.1| sensory box/GGDEF family protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 624

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/558 (24%), Positives = 267/558 (47%), Gaps = 17/558 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A   +   +   +     +   P +  +LG     +       L  +  + R    +
Sbjct: 63  YRAAFNAARLAMAVINREGIVLDANPALGALLGAEPARLIARNAADLADLREDSRT--WS 120

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +  RR RL    R++  D    W  I + P+ +S       +    D++E++   
Sbjct: 121 EYRDVLHGRRARLCCTRRLQRPDGHALWAEITVEPVPDS----CSVLLSMADVSERRDLQ 176

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKINDVLG 584
             +      D +T +PNR  F +RLT+ L+ +A       R  +  +D+D +K IND LG
Sbjct: 177 GRLRHLQMHDPVTRLPNRNLFFERLTSALEAAAYDRGGTGRIGLCYLDLDGFKAINDTLG 236

Query: 585 IAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             VGD +L ++ +R+ E       ++ARL G+ F +++     + ++ + A ++  ++  
Sbjct: 237 HRVGDRLLGAVAQRLTECAAPDGHLVARLGGDEFALLVRDSTGTEQLCELAKSVLAALQQ 296

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P ++  + ++V+ASIG     ++   ++ +++ A+  +Y AK  G      F        
Sbjct: 297 PFDVAGQRLSVSASIGVVERPAAGTHTTWLMQAADTTLYWAKEDGKARWTLFDPERNAHR 356

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  AVE  E  L Y P++ L+D  + G+EAL++W+HP++G +S + F+ +A
Sbjct: 357 MTRQALSSTLRPAVEREEFVLDYQPLVGLVDGVVKGVEALVRWEHPRFGRLSPNRFISLA 416

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +  ++L    R   +W+    + P+ + +N+A + + D++L   + +++++T
Sbjct: 417 EENGAIVPLGRWVLRTACRQARAWQLAHPLNPLIVSVNVAVRQVWDSDLVAEVGSILAET 476

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +ES VMG+  R    L RL ++G+++ +DDFGT  S L+YL  +P  T+
Sbjct: 477 GLPPHLLQLELTESAVMGSAGRPLQALLRLSEMGVAIAIDDFGTGYSNLAYLSRLPVSTL 536

Query: 882 KFNGSLMTG------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           K +GS + G             I+++++ +A  +  T+ A+ +      + L R+GCD  
Sbjct: 537 KLDGSFVQGFRAEEHPNPADETIVQALVELAHRLGLTVTAECVESAEQAERLARIGCDTG 596

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    + P+  + I  ++
Sbjct: 597 QGWFYSRPVPPDRISAMI 614


>gi|217970377|ref|YP_002355611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507704|gb|ACK54715.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 884

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/595 (23%), Positives = 257/595 (43%), Gaps = 17/595 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           VG  +L+  L                       ER  + +  + D +   D     +  +
Sbjct: 291 VGKAMLLWALFLGVTGLAAWLLYRLVDANDRANERSRILLQNASDGIHITDAEGIVIEAS 350

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                +LG +   + G         H     + R ++            +E   R  D  
Sbjct: 351 DAFCRMLGRSRSEVIGMRAGSWDACHPE--PDMRALISELFA-SSEVHTFETAHRRKDGS 407

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            + + +   P+   +G  + +   A DI+ +K +   +   A+ D LTG+PNR+  ++RL
Sbjct: 408 VYPVEVTAFPL-EVDGRTVLF-NSARDISARKSAEAEVRKLAYFDALTGLPNRRLLMERL 465

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
                  A    +   ++ ID+D +K +ND +G   GD +LV +   +   ++  D +AR
Sbjct: 466 ERAQASCARQGTV-GALLFIDLDNFKAVNDTVGHQEGDRLLVQVAAILVRCVRKDDTVAR 524

Query: 612 LSGNRFGIILI-----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS- 665
           L G+ F ++L          + + A     +  ++     L   E   + SIG + +   
Sbjct: 525 LGGDEFIVMLEELGGEGREAAEQAAAVGSKILAALNQRFQLGSSEHRTSVSIGVSLFGEL 584

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723
           +     E L+ A++AMY AK  G N V  F  S     R    ++  L +A+E  +  L 
Sbjct: 585 ADEPVDEPLRRADMAMYRAKLGGRNAVCFFDPSMLADVRARADVEAGLWIALEQRQFVLH 644

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P +   D  ++G+EAL++W HP  G +   EF+ +AEE  +I  +  ++LE     + 
Sbjct: 645 YQPQVA-ADGAVLGVEALVRWHHPVRGLVPPGEFIPLAEECGLILPLGRWVLEAACAQLA 703

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +W D      + I +N++++  L  +   G+ A + ++   P R+ L  +ES ++ + ++
Sbjct: 704 AWADDPWRSRLVIAVNVSARQFLHEDFVAGVVAALERSGADPGRLDLELTESSLVTDVDK 763

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
               +  L+ +G+  +LDDFGT  S L+YL  +P D +K + S +          AI R 
Sbjct: 764 VSEKMEALKALGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVRDILVDPNDAAIARM 823

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           II +A N+   +IA+ +  E     L R GC   Q    ++P   +++   L  R
Sbjct: 824 IIVLADNLGLRVIAEGVECEEQRDFLARNGCSSYQGYLFSAPQPIDALEAFLDAR 878


>gi|91792747|ref|YP_562398.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714749|gb|ABE54675.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 888

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 264/566 (46%), Gaps = 14/566 (2%)

Query: 402 SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +  E+ +LA      + + V   D              I G     + G   N L   H 
Sbjct: 326 AAEEQLNLAATVFSNTVEGVVITDRKGFITEVNSAFTKITGYELDEVKGKNPNVLSSGH- 384

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D+  F  + ++ +    GR Q E   R  + + +   I I  + + N  I  ++ +  D
Sbjct: 385 HDQLFFEKLWNTLLIQ--GRWQGEIWNRRKNGEVYPQEITISAVYDDNDTIAYFVAVFTD 442

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++EQ+ +   +   +  D LT +PNR  F+ R+   +  +   +  +  V+ ID+D +K 
Sbjct: 443 VSEQRNTQAKLDKLSLHDPLTQLPNRAQFMSRIDNAIYYAKQ-EGTQLAVVFIDVDFFKH 501

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +LV L  R+  +L    +L+RL G+ F  +L +  ++  +      + 
Sbjct: 502 INDSLGHVAGDTILVELANRLSSILHPGAVLSRLGGDEF-SLLTNMASTDNLIAIVNRIF 560

Query: 639 KSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
                P +    + I +TAS+G A + S    +  +L+NA+ AM+ AK  G N+   +  
Sbjct: 561 SVFEAPFSCSNGQSIRLTASMGLALYPSDGKDNDGLLRNADAAMHRAKQDGRNNYAFYTE 620

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            ++      + ++  L   ++     LVY P + L   E +G EAL++W+ P  G++S +
Sbjct: 621 AMTQESVRLLQLQSALHEGLKMQRFSLVYQPKVDLHSLETMGFEALLRWNDPILGSVSPA 680

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE+  +I  I +++L+      + W  Q  +    I +N+AS  L  N   + +Q
Sbjct: 681 VFIPIAEKTGLINEIGMWVLKTACEQGVRWLSQGKLFN-RIAVNVASLQLQRNSFVDDVQ 739

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++  T      ++L  +ES ++ NP  + + L RLR++GI+L +DDFGT  S LSYL  
Sbjct: 740 QVLLDTGLPAQHLELEVTESCMLQNPAEAIIELKRLREMGITLAMDDFGTGYSSLSYLKK 799

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + S +          AI +++I +   +   I+A+ +  +   + L    C+
Sbjct: 800 LPLDKLKIDRSFIKNIVQDANNAAIAKAVIALGHALNLQIVAEGVETKEQAEFLRLNDCE 859

Query: 934 YIQDSHVASPLGFNSILKLLKERFPL 959
             Q  + + P   + +   L+   P+
Sbjct: 860 QAQGYYFSHPKPSHELDDFLENSPPI 885



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           VW  +     V     +    G +   + G     L          F       +     
Sbjct: 222 VWIKNPQGVYVFCNRRVEQAWGRSKQDILGKTD--LELFDEALAQRFIEGDKLAIAQGGP 279

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +  E + R   +Q  W+     P   + G+++  IG+  +I + K + E +   A 
Sbjct: 280 VIVAECKDRDQLSQSTWLETFKTPAVTAEGELVGVIGVTRNIAKHKAAEEQLNLAAT 336


>gi|222053961|ref|YP_002536323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221563250|gb|ACM19222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 749

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 129/450 (28%), Positives = 225/450 (50%), Gaps = 6/450 (1%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +   +  +  D+T++K + E I   A+ DNLTG+PNR   +DRL  +L  +  D   R  
Sbjct: 276 ETGYFAFLMEDVTQRKVNEEQIRRLAYYDNLTGLPNRALLMDRLEQMLTKARRD-KTRVV 334

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K IND +G A GD +LV +  R+ + L+  D LAR+ G+ F ++   E   
Sbjct: 335 LLFLDLDRFKVINDTMGHAHGDQLLVQVANRLRQALRSSDTLARIGGDEFVVLFTLEGPQ 394

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           L ++  A  +  SI     +  R++  + SIG A++       + +L+ A++AMY AK  
Sbjct: 395 LNVSPLAQHLIDSITSVYPISGRDVYASTSIGIATFPDDGGDCNSLLRCADMAMYAAKEG 454

Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG     +           ++ +  L  A+E  E +L + PI+   D  +VG EAL++W 
Sbjct: 455 GGKGYHFYSPEMNLKAHARMEMETNLRHALEREEFFLEFQPIVNARDGRLVGAEALLRWS 514

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P+ G I    F+ +AEE   I  +  ++L    R +  WR+    PP  I +N++ +  
Sbjct: 515 DPEKGLIMPDMFIQVAEESGFIVPLGEWVLRTACRKMKDWREAGL-PPFRISVNVSGRQF 573

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                 + + ++I +T   PS + L  +E+ +M + E +   L +L+++ IS+ +DDFG 
Sbjct: 574 CQANFTDTVCSIIRETGMDPSFLALEMTETSLMVDVEATAKALMQLKELDISIVIDDFGA 633

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL   P D +K + S +   +      AI+ +II MA  ++  ++A+ +     
Sbjct: 634 GYSSLGYLQKFPIDRIKIDRSFIRDLSSHANDKAIVEAIIAMAARLKLQVVAEGVETSEQ 693

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  L   GC  IQ  +   PL       LL
Sbjct: 694 LDFLKEQGCHEIQGFYFHRPLSEELFKTLL 723


>gi|309779289|ref|ZP_07674051.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921847|gb|EFP67482.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp.
           5_7_47FAA]
          Length = 863

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/573 (24%), Positives = 257/573 (44%), Gaps = 17/573 (2%)

Query: 390 VLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            L      +    +  R + +    S + +    +    +   P      G ++    G 
Sbjct: 291 TLRRRGAERKRHIEDLRLASMVYASSSEAMMVTSLDGHVIDVNPAFTVTTGYSAQEFKGQ 350

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                  I     +    ++D+       +G    E+ +R  D      ++ I   ++S 
Sbjct: 351 SS---DAIRSECNER--AVIDAMREGVSTKGTWSGEYLIRRKDGSEFPALLTIDTFADSA 405

Query: 507 -GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G+  R + + +D+TE+K++ E I   A  D LT +PNR  F +RL   +  +    + +
Sbjct: 406 MGEPRRVV-LIHDMTEKKRAEEVIWRQANFDPLTELPNRHMFYNRLRHEIARA-RQASTQ 463

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ ID+D++K++ND LG   GD +L  + RRI  +++  D +ARL+G+ F IIL    
Sbjct: 464 LALLFIDLDRFKEVNDTLGHDQGDVLLKEIARRISAIVRGTDTVARLAGDEFTIILPDLP 523

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++        A+   IA P+ L E  + V+ASIG A +     ++  +L  A+ AM+ AK
Sbjct: 524 DAGAATPIIRALLARIAAPLQLGEESVEVSASIGVAMYPRDADSAESLLVRADQAMFAAK 583

Query: 686 HRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F  +  R+++  ++   DL +A+   +L + Y PI+ L+  ++   EALI+
Sbjct: 584 SAGRNQWAVFTPALQRAEQERLRVTSDLRVALTQGQLAVHYQPIVDLLTGKVRKAEALIR 643

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G I  ++F+ +AE+  +I  I  ++L +    +  W    +   + + +N +  
Sbjct: 644 WTHPVRGEIDPADFIPVAEDSGLIVDIGKWVLNQALDQLTQWHATLDNT-LQVSVNKSPL 702

Query: 804 DLL-DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +        E    ++ +   +P  + +  +E  +M +       L   R+ G+ + LDD
Sbjct: 703 EFRAHQSSNESWPKVVERRGLAPHSLVVEITEGSLMADSAEVVEHLHEFRRAGVDIALDD 762

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL     D +K + S +       K IA+  +I+ MA  +   +IA+ I  
Sbjct: 763 FGTGYSSLSYLKRFDIDFIKIDQSFVRSLAHDPKDIALCSAIVSMAHALRIKVIAEGIET 822

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           E     L   GCDY Q      P+   +    +
Sbjct: 823 EEQKAILVAAGCDYGQGHLFCPPVPPAAFESFV 855


>gi|300311036|ref|YP_003775128.1| signal transduction protein [Herbaspirillum seropedicae SmR1]
 gi|300073821|gb|ADJ63220.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain protein [Herbaspirillum seropedicae
           SmR1]
          Length = 750

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/573 (25%), Positives = 250/573 (43%), Gaps = 16/573 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A     Q I S   +    V  S D++  +D+    V   P      GL +      I
Sbjct: 170 LKAEHAIQQRIRSSERQFRTLVDNSPDVILRYDMEGRCVFANPAFTRETGLMADQDINTI 229

Query: 450 RNWLPYIHINDR-----DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +       +D      +  R +           +  E+R            + I P  +
Sbjct: 230 LDRSANRRWDDESCSFGERVRQV---AATGVADVVVLEWR--HPQGHLVSHEMHIVPEYD 284

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++  I   + I  D+T +K+    +   A  D L+G+PNR+   D L   +  +      
Sbjct: 285 ADEQIFGTLAIGRDVTRRKEVEFKLRHQANYDPLSGLPNRRLLGDMLQREVASAKKHA-Y 343

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+ ID+D++K +ND LG +VGD +LV   +R+   ++  D++ARL+G+ F  +L   
Sbjct: 344 PLAVVFIDLDRFKDVNDSLGHSVGDQLLVVAAQRVRASVREHDLVARLAGDEFVAVLPRL 403

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             S  +      +  ++A P  L E  + ++AS+G A +     T + ++  A+ AM+ A
Sbjct: 404 EASAALTRIGDDIVAALAEPFQLGEHRVRISASVGIAIYPHDADTVTTLIGCADQAMFAA 463

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N +  F         +R  +  DL  A++  +  L + P + L    I   EAL+
Sbjct: 464 KGGGRNGLAFFTEDMREKSFERRRLLNDLYDALQEGQFELHFQPALELQSGVIHKAEALV 523

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIA 801
           +W HP +G IS   F+ +AEE  +I  +  ++L+  AR  + W  Q   P    I +N++
Sbjct: 524 RWRHPAFGMISPDRFIPLAEESGLIFDLGRWILQEAARVSVRWNAQGTSPFRKQISVNLS 583

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
               L+      +   +S     P  I +  +E +++ + E  R  L  LR  GI + LD
Sbjct: 584 PVQFLNGHYDAIVMDQLSLQGCQPGLIAIEITEGLLLDDSEAVRSQLNNLRAAGIQVALD 643

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +SYL     D +K + S +      +   AI+ +II MA  +   +IA+ + 
Sbjct: 644 DFGTGYSAMSYLKKFSMDYLKIDRSFVQDMVDADSNKAIVEAIIVMAHRLGMKVIAEGVE 703

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +  + L   GC+Y+Q    + PL  +  L  
Sbjct: 704 TMVQAQLLRDAGCEYVQGYLYSRPLPEDDFLNF 736


>gi|307608779|emb|CBW98168.1| hypothetical protein LPW_00301 [Legionella pneumophila 130b]
          Length = 976

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 138/576 (23%), Positives = 269/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++      +   +   + + A+  S  +V   D           +    G     +
Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R        ++       +   +         E   +    +  W+   I P+ N
Sbjct: 467 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +I  Y+ +  D+T++K   E +   A  DNLT +PNR   +++L   +  S  ++  
Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 581

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K+IND LG A+GD +L +L+ R   +++  D +ARL G+ F +IL + 
Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A   R+  + P  +  +E+ V+ SIG A +      +  +++NA+ AMY +
Sbjct: 642 MQDKDAEIIAKKCREICSQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQS 701

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG N+   F+ +     ++ + IK +L  A   +ELY+ Y PII L + ++V  EAL+
Sbjct: 702 KIRGKNNWTVFQNTMIEGANNHIRIKTELHQAFTRNELYICYQPIIELKENKVVAAEALL 761

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W +   G I+  + + +AEE  MI  +  ++L+++      W        I + +NI++
Sbjct: 762 RWQNTTLGQINPDQIIALAEETGMIIPLGYWILDKVCAQAKEWEFITG-SKIKVAVNIST 820

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +    +Q ++ +T  S   +    +ES  + + +     L +L  +GI  +LDD
Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 880

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S L Y+   PF  +K +   +    +   +++++ SII MA+N++ ++IA+ I  
Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 940

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ +  M CD +Q  + + PL  +  L  L  +
Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFYLMNK 976



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     + Q +    +    +    ER    +    D ++  ++    +         L 
Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTDGIFIHNLQGAFLEVNEAACLSLN 342

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
            +   +       +           +  L+      ++G +  E   R  D     + +R
Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTTFPVDVR 396

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + N+ G+ L  + I  DIT QK+S   I   
Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 12/170 (7%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
             +++  F  I  +L             +  +  +  +GD V   +         P    
Sbjct: 152 FEILMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFEN 211

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I    +          L    + D   F  I  +         + + R R  D  +    
Sbjct: 212 ITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQ 269

Query: 497 IRIRPMSNSN-GDILRYIGIANDITEQ-------KKSLEGILCN--AFQD 536
             I P+ +   G I ++I I  DITEQ       K S E       A  D
Sbjct: 270 TIIVPVMDDELGRITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTD 319


>gi|320105453|ref|YP_004181043.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Terriglobus saanensis SP1PR4]
 gi|319923974|gb|ADV81049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Terriglobus saanensis SP1PR4]
          Length = 1029

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 137/563 (24%), Positives = 260/563 (46%), Gaps = 21/563 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +  S       D+  + V   P    +L      M G +   L      +       L 
Sbjct: 464  IIDASPFSTIVTDLEGNIVAVNPATERMLWYTKAEMVGKM-TPLSLHDPVELKLRAAELS 522

Query: 470  SFV--------------GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            + +                R    + E+     D     + + +  +++  G    Y+GI
Sbjct: 523  AGMGVPVAANMEVFIVGPKRGMAEENEWTYIRKDGSRLPVQLTVTALTDDYGHETGYMGI 582

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            A DITE+K+  + I   A  D+LTG+P R  F DR+   L         +  +M+ID+D 
Sbjct: 583  AYDITERKRQQDYISHLAHHDSLTGLPTRILFKDRVDVALARVQRYGG-KCALMLIDLDN 641

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K IND LG   GD+VL+ + +R+ E+L+  D ++R+ G+ F ++L    +       A+
Sbjct: 642  FKDINDSLGHHAGDEVLIVIAQRLKEVLRSTDTVSRMGGDEFTVLLDHITSEEDATTAAV 701

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +  +++ PI + E  + ++ASIG + +     TS  +LKNA+ AMY+AK  G      F
Sbjct: 702  KLLATLSKPILIGEDLLPISASIGISIYPEGGATSGNLLKNADAAMYYAKGSGKQSYRLF 761

Query: 696  RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +   + R+ ++  L  A+++ E  +VY P + L ++ I+G+E L +W   + G + 
Sbjct: 762  TQGLADATTKRLQMEMALKKAIKSQEFSVVYQPQVALANDVIIGVEVLARWKSERLGVVP 821

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             S+F+ IAE+  +I  +  ++L     D+ +  D     P+ + +N++ + L        
Sbjct: 822  PSDFIPIAEQCGVIAPLGEWILRTACNDVKALSDSIGR-PLRLAVNVSPRQLEREGFAAR 880

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  ++ +T++    +++  +E V+M +       L  L+  G+ + +DDFGT  S +SYL
Sbjct: 881  VALILVETMFPAEMLEIEITEGVLMSDSLLVWEALKDLQSQGVQMAIDDFGTGFSNISYL 940

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              +  + +K + S +T         A++ S+I MA  +  T++A+ +  E     L   G
Sbjct: 941  LKLSVNQIKIDRSFITNLEDDPGCDAVVGSLISMANTLGVTVVAEGVETEGQRDILRAKG 1000

Query: 932  CDYIQDSHVASPLGFNSILKLLK 954
            C   Q      P+    ++K+L+
Sbjct: 1001 CHEAQGYFYHRPMDVADLMKVLQ 1023


>gi|167035811|ref|YP_001671042.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166862299|gb|ABZ00707.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 568

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 135/561 (24%), Positives = 252/561 (44%), Gaps = 18/561 (3%)

Query: 406 RQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDN 463
           R   AV  +   ++ + D              I G ++  + G     L    H    + 
Sbjct: 4   RYRAAVDAA--AIFSETDKSGIITYVNEQFCDISGYSAQELIGQNHRILNSGQHP--PEF 59

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIANDITEQ 522
           F  +       +    + E   R  D   +W+   I PM + ++  + +Y+ I  D+TE+
Sbjct: 60  FIDMWKKVSRGQ--VWKGEICNRKKDGSLYWVESTIVPMYDDASQRVQKYVSIRFDVTEK 117

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K LE +   A  D LTG+PNR      L   +  + +  +    V V+D+D +K+IND 
Sbjct: 118 RKLLETLQWQAEHDELTGLPNRFLLSKALDQAIVKAKSQSST-VAVGVLDLDGFKQINDR 176

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD +LV++  R+   ++  D +ARL G+ F  ++    +   +      +  +++
Sbjct: 177 YGHEIGDRLLVAVADRLKHSMRIEDTVARLGGDEFV-LISGVRDPKVLESALQRLLAALS 235

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               +    I ++ASIG   + +    +  +L++A+ AMY AK  G N    F VS  + 
Sbjct: 236 AVYVIDGIGINISASIGVTLYPNDNENADTLLRHADQAMYKAKQSGRNCFYLFDVSKDKL 295

Query: 703 DRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +        +  A+ + EL L Y P I L    ++G EAL++W HP+ G I    F+ +
Sbjct: 296 IKSAFDSVIRVRQALHDGELCLHYQPKISLSSGAVIGFEALLRWQHPRDGLILPQYFIPL 355

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  +I  I  +++++    I  W D  +     + +NIA+  L      + ++ L+  
Sbjct: 356 IEQSDLIVEIGEWVIDQALSQIEQWADLGH--SWSVSVNIAALHLKKENFVKSLKFLLDS 413

Query: 821 T-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  + +  +ESVV+ +       L   + +G++ +LDDFGT  S LSYL  +P  
Sbjct: 414 HPNVLPQMLDIEITESVVIEHLSHVTQCLIACQDLGVTFSLDDFGTGYSSLSYLKQLPTQ 473

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K + S +      +  + + ++II +AK+    +IA+ +        L  +GCD  Q 
Sbjct: 474 SIKIDKSFIRDILIDKDSLGLTKAIIGLAKSFNREVIAEGVETVEHGVLLMNLGCDVAQG 533

Query: 938 SHVASPLGFNSILKLLKERFP 958
             +A P+    +   + +  P
Sbjct: 534 YGIAKPMPVEQVPSWVAKFVP 554


>gi|254459177|ref|ZP_05072599.1| sensory box/ggdef domain/eal domain protein [Campylobacterales
           bacterium GD 1]
 gi|207084070|gb|EDZ61360.1| sensory box/ggdef domain/eal domain protein [Campylobacterales
           bacterium GD 1]
          Length = 760

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 170/697 (24%), Positives = 304/697 (43%), Gaps = 30/697 (4%)

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           LH      K+  +  S I  + I   +    P   A +  I             IY  + 
Sbjct: 80  LHSLEKSFKLHALATSLIISVGIFVLLPENKPFYQAFLTMIVAGLSAGTVMSLSIYKDLA 139

Query: 333 GYERAVLLIP-AWILIFIWFIGLWMAITKRLDNDIIQPALVGG--LVLIVILIGFTVIQH 389
                +LL P A  +         +         ++           +I ++    ++Q 
Sbjct: 140 RNYLIILLAPFAIAMYKFGTEMHILMSLLITLFLMLLITFSKKHHEKIIELITSNMLVQD 199

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  S+  FS               V+ +D           I+ +L      +    
Sbjct: 200 SEKELKLSESNFSS------IFKEVPIGVFTYDKNLIITEANRSISELLNAPIHKLVNMD 253

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L      D+   R  LD+ +   RG  + E+    +D +  W+ ++  PM + +  I
Sbjct: 254 MKLLR-----DQS-IRPQLDATLSGERGYYEGEYHNLISD-EEIWIKMQAVPMYDIDNQI 306

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +GI  DIT + ++ + I   AF D+LTG+ NR +  DRL   +   A  +     ++
Sbjct: 307 KGGLGIVEDITGRIQADKKIRQQAFYDHLTGLANRLTLNDRLEQQIARLARHNRF-GAIL 365

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            IDID +K IND LG  +GD +L +  +R   +++  D +ARL G+ F I+L   +++  
Sbjct: 366 FIDIDNFKTINDSLGHHIGDTLLKTFAQRASSIMRKEDTVARLGGDEFVILLSDLSDNKN 425

Query: 630 IA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            A     + A  + K +  PI + E  + VT SIG  + +  +   + +LK+A++AMY A
Sbjct: 426 HALEYSHNVARKLHKLMKEPIEVEEHSLYVTLSIGITTISEEEEDINVILKHADIAMYKA 485

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N    F   +S    D++++  +L  A+++++  L Y PI+      I   EALI
Sbjct: 486 KQQGRNTTCFFEQGMSKKIEDQLILGSELREALKHNQFELYYQPIVETKSSIITSCEALI 545

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP  G I   +F+  AEE  +I +I  ++++R   D      +       I INI+S
Sbjct: 546 RWNHPTRGLIYPDDFIPYAEESGLIISIGDWVIQRACIDYKKINHKIKN----ISINISS 601

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K    ++    +     +   +PS +KL  +ESV + N   +   +  L+  G ++ +DD
Sbjct: 602 KQFNQDDFVTKILKATQEYSVNPSALKLELTESVALDNLLATTDKMNLLKSHGFTIAMDD 661

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +PFD +K + S +      E   +++++I+ ++K  +  +IA+ +  
Sbjct: 662 FGTGYSSLSYLKNLPFDFLKIDRSFIQHVLDNEDDASLVKTILTISKQFKFEVIAEGVEE 721

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +  ++ L  + C+Y Q   V+  L  N   K L    
Sbjct: 722 KEHVEFLKDLDCEYYQGFVVSKALPVNEFEKFLNNEQ 758


>gi|149184738|ref|ZP_01863056.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148832058|gb|EDL50491.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 710

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/569 (24%), Positives = 271/569 (47%), Gaps = 20/569 (3%)

Query: 400 IFSDGERQSLAVLG---SGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             +D  R+   +     +G    W  D+    +  +     +LG ++  ++G     L +
Sbjct: 4   ALNDHARRVELLDSFEKAGLGWFWATDVHGRLIYLSQSAIELLGTSADEIYGAQLTDLFH 63

Query: 456 IH----INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +       D +     L  ++  R        ++     +  ++    +P  + +     
Sbjct: 64  VDKGDREEDAEREVRPLAYYLSARNSISGLRVKMAIR-GEDRYLEFAGKPHFDRHNKFCG 122

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G A D+T Q+++       +  D+LTG+ NR     +L + L     +D     +M++
Sbjct: 123 YRGSAKDVTAQRETQRDAERLSQYDSLTGLANRHRMHKKLDSRLKHF-RNDKRVCALMML 181

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K++ND LG   GD++L  +  R+G++      + RL G+ F I+L   ++   + 
Sbjct: 182 DLDRFKQVNDTLGHPAGDELLKQVAARLGQICGHLGEIGRLGGDEFLIMLPDVDDRGDLG 241

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D A  + + IA P ++      +  S+G A      + + E++K A+LA+Y AK  G   
Sbjct: 242 DLAARVIQMIAQPYSINGSRAIIGVSLGIAIAPYDGLDAEELIKAADLALYAAKGGGRGQ 301

Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +          R M++EDL  A+   EL + Y PII+  D ++ G EALI+WDHP+ 
Sbjct: 302 YRFYSSDLKEGAKFRRMLEEDLRDALHKGELAMHYQPIIKAKDYKLSGFEALIRWDHPER 361

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+  AE++ MI  I  + L ++      W        + + +N++     + +
Sbjct: 362 GFVPPDLFISCAEDIGMISEIGEWALRKVCEQAQQWP-----VELRVAVNVSPTQFANAD 416

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +Q  +  +  +P R++L  +ESV  G+ ER+  +   L+ IG+ L LDDFGT  S 
Sbjct: 417 FVQIVQRALHASGLAPDRLELEITESVFAGDEERTLEIFHALKDIGVRLALDDFGTGYSS 476

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           +SYL + PFD +K + S + GSTE      AI+ +I+ +A+ ++   +A+    + +++ 
Sbjct: 477 MSYLRHAPFDKIKIDQSFVRGSTEEGNNNSAIISAIVSLARALKMETVAEGTETKDELEL 536

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + + G  +IQ    + P+  +  L+ L++
Sbjct: 537 VIKRGASHIQGYIFSRPITHDDALERLEK 565


>gi|196043723|ref|ZP_03110961.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|225864514|ref|YP_002749892.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|196026032|gb|EDX64701.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|225790408|gb|ACO30625.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 828

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 158/771 (20%), Positives = 304/771 (39%), Gaps = 54/771 (7%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    S+  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVSLVFRPAIFNAKSK----LFIFILVLTGLSITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +  H  +  +       +  +  ++   P  T S     + +        +I
Sbjct: 137 YLYFYLQDDLSHRSLILLRCLYRIFLLFI-AIAATIPRSTYSRRNYFIINPTFGKKLLVI 195

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +                       I +   + ++  +  +        V ++I      +
Sbjct: 196 F-----------------PYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRM 238

Query: 388 Q---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           Q                             S  +  + ER         D +   D    
Sbjct: 239 QNKDLTETLKVFNNQLEKKVSQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGI 298

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      + +LG  S ++ G            D+      L   +G R      + RV+
Sbjct: 299 VLNINQSGSILLGKDSAALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVK 354

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +               G       +  DIT  K+  + I   AF D +T I NR  
Sbjct: 355 NNNEKDIHFWYVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIF 414

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L   ++ +         ++ ID++++K IND +G ++GD VL  + +R    L   
Sbjct: 415 FQQELEKSIERAQKTQG-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRAYLSPS 473

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             LAR+ G+ F II+ +     ++ D    + +    P  + +    ++ SIG A +   
Sbjct: 474 IPLARIGGDEFAIIVHNHTEQQQL-DLCENLFRITKKPFVVNQHSFYLSLSIGIAVYPFG 532

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724
            I ++ +L++A++AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y
Sbjct: 533 GINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLY 592

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P I     +++G EALI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  
Sbjct: 593 QPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKE 652

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + IN+++ +       + + ++I +     + I L  +E + M + + +
Sbjct: 653 WHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKET 711

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              L  L+  G+ L++DDFGT  S L+YL   P DT+K     +     +     I+++I
Sbjct: 712 LSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 771

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I +A  +   +IA+ +  +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 772 ISLAHTLNMKVIAEGVETKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 822


>gi|304313323|ref|YP_003812921.1| response regulator/sensory box [gamma proteobacterium HdN1]
 gi|301799056|emb|CBL47299.1| response regulator/sensory box [gamma proteobacterium HdN1]
          Length = 704

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 137/591 (23%), Positives = 266/591 (45%), Gaps = 15/591 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V++    +   +       +      ++      + +   G+ +             P +
Sbjct: 112 VLVSKVRIFLELDQRQRQLEEALHRLDQLKTSNEVLLRSVGEGIIGVSADGSITFVNPAV 171

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDN----FRTILDSFVGYRRGRLQYEFRVRAADN 490
             IL  +S  + G        +     +        I  + V             R   N
Sbjct: 172 EAILSFSSAELIGTQIYKSVIVSAQQSERPDWEQSRIFKACVSGTPYHTDVGV-FRTGGN 230

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +   +     PM +  G     + +  DITE++K  E +   A  D LTG+ NR  F + 
Sbjct: 231 RVIPVEYTSSPMHSPTGKFDGVVIVFKDITERRKIEEKLNYMAQYDALTGLGNRNLFSNA 290

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   +  S    N    ++ +D+D++K++ND LG   GD +L  +  RI   ++  D+L 
Sbjct: 291 LNNAIAQSRHTQN-PFALLFLDLDRFKQVNDTLGHDAGDLLLKDVAGRIRNCIRDADVLC 349

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F +I+      +     +  +   ++    + E+EI V  SIG   +      +
Sbjct: 350 RIGGDEFTLIIAGAAIEIAAQRVSEKLISELSRSFEIYEQEIYVGGSIGIVYYPEMGADA 409

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728
           +E++KNA++AMY AKH G N  + F  +        + ++ +L  AVE+ + ++ Y P  
Sbjct: 410 NELIKNADMAMYQAKHEGRNRFKVFDPNMRAQIEETMALEVELRRAVESMDFFVHYQPKY 469

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            ++D  I+G+EALI+W       IS + F+ IAEE  +I +I  ++ E     + +W  +
Sbjct: 470 DMIDGSIIGVEALIRWRVGDR-MISPAAFIPIAEETGLISSIGRWVFEASCSQLRAWDQK 528

Query: 789 ANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            ++P    + +N++ + L D  L   +  +I +  +S   +++  +ES+     + +   
Sbjct: 529 FHLPDGFRVSVNMSVQQLHDPLLVNMVHRIIDQCGFSHGLMEIEITESLFFERTQEAVSR 588

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMA 906
           L  LR++G+ + LDDFGT  S LSYL  +P   +K + + +    T++ IAI+ +++ +A
Sbjct: 589 LESLRRLGVGIALDDFGTGYSSLSYLTKLPLTVLKIDKAFVDEIQTQQGIAIISAVVALA 648

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + +   +IA+ +  E  +  L ++GC + Q      PL   ++  L  E+F
Sbjct: 649 RGLNIDVIAEGVETEDQVDRLVQLGCRFAQGYFFNRPLSVEALDTLFSEKF 699


>gi|253699305|ref|YP_003020494.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21]
 gi|251774155|gb|ACT16736.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21]
          Length = 742

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/598 (23%), Positives = 274/598 (45%), Gaps = 30/598 (5%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-- 427
           ALV G +   +         + A     + +    E+         + +  +   R    
Sbjct: 142 ALVVGALAGALAFFRLRTVPLRALDEAYRVLKQSEEKYRSVYESLNEGLALYRASRREDG 201

Query: 428 ------VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
                     P    + G +   + G I   L  +     +   + L +     RG +  
Sbjct: 202 SADLVLTDVNPAAINVFGFSRDDIGGWITELLNGLFAESTEQIFSALQA-----RGEVSL 256

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA-NDITEQKKSLEGILCNAFQDNLTG 540
           E   + +  +    ++   PM          +     D+TE+K++ E +   A+ D+LTG
Sbjct: 257 ELE-QNSTGRIF--LLTAFPMG------YGMVATLLEDVTEKKRTAEQLERLAYYDSLTG 307

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR+  LDR+   +  +   + ++   + +D++ +K IND LG   GD +L+ + +R+ 
Sbjct: 308 LLNRRMLLDRMEQAIGTAQR-EGVKVATLFMDLNGFKVINDTLGHKAGDQILIEVAKRLQ 366

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           ++++  D LARL G+ F +    E +    +  A  +  +I     + +RE+ V AS+G 
Sbjct: 367 KVVRKRDTLARLGGDEFVVAATFEKD-DNASAIAKNLINAITPVYQVCDREVYVGASVGI 425

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENS 718
           + +         +LKNA++AMY+AK +G      +  +++    +R+ ++  L  AVE  
Sbjct: 426 SIFPDDGDVPETLLKNADIAMYNAKSQGRGDFCFYSAQLNERLHERMQLEFKLRGAVERE 485

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E +L Y PI+      I  +EAL++W+ P+ G +    F+ +AE+  +I  +  ++L   
Sbjct: 486 EFFLEYQPILDSKTGRITAVEALLRWNDPERGMVMPEAFIPLAEDTGVILPLGEWVLRTA 545

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  W+D   + P+ + +NI+ K     +L + ++  + ++   PS ++L  +E+ ++
Sbjct: 546 CAKVRQWQDA-GVMPVRMAVNISGKQFTQGDLSKTVEEALLESGVHPSWLELELTETCLV 604

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896
            N E +   L RL+ + +S+++DDFGT  S L YL   P D +K +   +          
Sbjct: 605 KNIEDTVKKLCRLKGLSVSISIDDFGTGYSSLQYLKNFPIDHLKIDRGFINNVCELPDDR 664

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           AI+ +II +AK ++  +IA+ +      + L R GCD  Q  +   PL    +L++L 
Sbjct: 665 AIVDAIIGIAKAMDLHVIAEGVETRQQAEHLVRRGCDEFQGYYFYRPLSEEKLLEVLA 722


>gi|170694697|ref|ZP_02885848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia graminis C4D1M]
 gi|170140328|gb|EDT08505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia graminis C4D1M]
          Length = 765

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/610 (22%), Positives = 263/610 (43%), Gaps = 19/610 (3%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
              +    A+  R             L  I   +G  V Q  +A     Q + +  E   
Sbjct: 151 AGAVLGAFAVYHREPRRPTAQEET-MLRDIGRSVGLAVHQDAMA-----QRLANSEEHHR 204

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L V    + +         +   P    +L      +   IR  +      D    +   
Sbjct: 205 LVVDHLIEGIVVQSREGVVLACNPSAQRMLRTGPQIVGRSIRTVMVRGFHEDGSPVKEDE 264

Query: 469 D---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKK 524
                 +   +  L     V     +  W+   + P+           +    DI   ++
Sbjct: 265 RPTSQVLATGKPMLGVTLAVELVSGEVIWITENVVPILKPGQSKPDSVLISFTDIGPVRE 324

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT---VMVIDIDKYKKIND 581
           +   +   A +D+LTG+ NR    +R+ ++    A + +       V+ +D+D +KK+ND
Sbjct: 325 AQRQLKFLATRDSLTGLYNRAYLTERMNSLFAPGAPNGSGEFANVAVLFVDLDGFKKVND 384

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L S+ +R+   +   D LAR+ G+ F I++ + + S ++   A  +   I
Sbjct: 385 TAGHEAGDALLKSVAQRLAGCVGPDDTLARVGGDEFVIVVGASDCSDRLIALARHILDEI 444

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A+P  + + E  + ASIG + +      +  +++NA+ AMYHAK RG N+ + F     +
Sbjct: 445 AVPFAVADNEYYLGASIGISRFPEDGQDAPTLMRNADSAMYHAKQRGRNNFQFFTAELNQ 504

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    I++ L  A+   EL LVY PI+       +G EAL++W + + GN+S +EF+ 
Sbjct: 505 QLQRRFVIEQSLRRALAGGELSLVYQPIVDSHAGRTIGAEALLRWYNSELGNVSPAEFIP 564

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  ++L         WR     P + + +N++ +   D  L E ++  + 
Sbjct: 565 VAEDAGLIAEIGEWVLAHACEQAARWRRTLA-PDLIVAVNLSPRQFND-GLVERIRRCLD 622

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ ++L  +E ++M + +    +L  L   G+ +++DDFGT  S LSYL   P  
Sbjct: 623 QSGLDPAALELEITERLLMSDSDTVLPMLQTLSATGVRISVDDFGTGYSSLSYLKRFPLH 682

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S + G       IAI ++++ MA ++   + A+ +        L  + CD  Q 
Sbjct: 683 NLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETPEQAAFLRSIDCDKQQG 742

Query: 938 SHVASPLGFN 947
              + P+G +
Sbjct: 743 YLYSRPVGAS 752


>gi|52840285|ref|YP_094084.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627396|gb|AAU26137.1| sensory box (GGDEF/EAL domain) regulatory protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 985

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 138/576 (23%), Positives = 268/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++      +   +   + + A+  S  +V   D           +    G     +
Sbjct: 416 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 475

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R        ++       +   +         E   +    +  W+   I P+ N
Sbjct: 476 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 531

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +I  Y+ +  D+T++K   E +   A  DNLT +PNR   +++L   +  S  ++  
Sbjct: 532 DNEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERAISKSHINNQ- 590

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K+IND LG A+GD +L +L+ R   +++  D +ARL G+ F +IL + 
Sbjct: 591 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 650

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A   R+  + P  +  +E+ V+ SIG A +      +  +++NA+ AMY +
Sbjct: 651 MQDKDAESIAKKCREICSQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQS 710

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG N+   F+ +     ++ + IK +L  A   +ELY+ Y PII L + ++V  EAL+
Sbjct: 711 KIRGKNNWTVFQNTMIEGANNHIRIKTELHQAFTRNELYICYQPIIELKENKVVAAEALL 770

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W +   G I+  + + +AEE  MI  +  ++L+++      W        I + +NI++
Sbjct: 771 RWQNTTLGQINPDQIIPLAEETGMIIPLGYWILDKVCTQAKEWEFITG-SKIKVAVNIST 829

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +    +Q ++ +T  S   +    +ES  + + +     L +L  +GI  +LDD
Sbjct: 830 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 889

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S L Y+   PF  +K +   +    +    ++++ SII MA+N++ ++IA+ I  
Sbjct: 890 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNELSLINSIITMARNLKLSVIAEGIET 949

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ +  M CD +Q  + + PL  +  L  L  +
Sbjct: 950 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFYLMNK 985



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     + Q +    +    +    ER    +    D ++  ++    +         L 
Sbjct: 292 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVADGIFIHNLQGAFLEVNEAACLSLN 351

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
            +   +       +           +  L+      ++G +  E   R  D     + +R
Sbjct: 352 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGPINTEGMHRRKDGTTFPVDVR 405

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + N+ G+ L  + I  DIT QK+S   I   
Sbjct: 406 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 437



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 3/153 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
             +++  F  I  +L             +  +  +  +GD V   +         P    
Sbjct: 161 FEMLMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFEN 220

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I    +          L    + D   F  I  +         + + R R  D  +    
Sbjct: 221 ITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQ 278

Query: 497 IRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528
             I P+ +   G I ++I I  DITEQ      
Sbjct: 279 TIIVPVMDDELGRITQHIAIKQDITEQVHRFNQ 311


>gi|260577386|ref|ZP_05845355.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sp. SW2]
 gi|259020389|gb|EEW23716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sp. SW2]
          Length = 854

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 155/642 (24%), Positives = 277/642 (43%), Gaps = 26/642 (4%)

Query: 332 KGYERAVLLIPAWILIFIWFIGLWM------AITKRLDNDIIQPALVGGLVLIVILIGFT 385
           + +  A L + A +++   F+   M        T        Q AL    V +   I   
Sbjct: 213 RDHTAAFLGVLALVILAATFVVFRMGLRAERLQTIYEMARKHQAALQHKNVELSAEISHR 272

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            I         S+ +    E   +A     S + +   D+    +     +A ++G    
Sbjct: 273 QIVE-HDLKTKSEELDRTNENLKIAATAFESQEGMAVLDMGGRILRVNAALARLMGCEPN 331

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           S+ G +  +   I   D +     L++ +       + + R +A       +   + P+ 
Sbjct: 332 SLLGRL--FEEMIV--DEEAGGLGLNTALRE-GCPWKGDVRTKAVSAAGASLWFTLSPVM 386

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G     IG   D+++++K+   I   AF D LTG+PNR    DR    +  +A    
Sbjct: 387 SDKGLPTSMIGTFYDVSDRRKAERQIKRLAFYDQLTGLPNRHLATDRTIQAMRTNAQSGE 446

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI- 622
               ++ ID+D++K++ND LG  VGD +L ++  RI   L     +AR  G+ F ++L  
Sbjct: 447 F-GALLFIDLDQFKRLNDTLGHDVGDKLLKAVADRISRRLGGDSTVARFGGDEFVVLLPT 505

Query: 623 -----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
                  + +L     A  + +    P  L   E   + SIG A +++   T  ++LK A
Sbjct: 506 LKTVIERDAALLAEHAAELVLRIFKQPFQLEGYEHNCSTSIGIALFSAPLETFDDILKRA 565

Query: 678 ELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY AK  GGN +  F     R   + V +  DL  AV+  E      P I      +
Sbjct: 566 DIAMYEAKGAGGNVIRFFDPEMQRVVREEVSLDADLRTAVDRGEFEFHLQPQIN-RFGTV 624

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG E L++W HP  G +S   F+ IAE+  +I  +  ++L+  A+ + +W  +     I 
Sbjct: 625 VGAEVLLRWPHPVRGLVSPGVFIPIAEKSGLIVPLGNWVLDCAAKVLSNWAAKELFSDIN 684

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + IN+++  L   +  E +   I +    P R+KL  +ES+++ N + +   +  L++  
Sbjct: 685 LSINVSANQLHSEDFVETVLGAIERHGARPRRLKLEITESLLVNNLDDAIRKMTALQQHE 744

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           I  +LDDFGT  S LSYL  +P D +K + S ++     +   AI   I+ + + +   +
Sbjct: 745 ILFSLDDFGTGYSSLSYLKQLPLDQLKIDRSFVSDLPQNKNDAAIAEMIVALGRTLGLHV 804

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           IA+ +  E     L  +GCD  Q      P+  +   + +  
Sbjct: 805 IAEGVETEEQKGFLEGIGCDQFQGYLFGVPMPLDQFEEFVSA 846


>gi|71280809|ref|YP_268663.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71146549|gb|AAZ27022.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 692

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 146/563 (25%), Positives = 261/563 (46%), Gaps = 15/563 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ +F +            D+ +  ++    V         L +A     G      
Sbjct: 136 HAQSQALFKEH-MLETIFNAIPDLFFLMEVDGMIVDYHTGDQKNLYVAPHQFIGK--RMT 192

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +       F+T +D  +    G + +E+ +            R+  +   N    + +
Sbjct: 193 DLLPQEVVSKFQTHVDKILQQE-GMITFEYELTMPHG-LVHFEARMSYLPEYN----QIV 246

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  DI+EQ KS E I   A+ D LT +PNR   LDRL+ +L  +  + N +  V+ +D+
Sbjct: 247 LIIRDISEQYKSAEIIRHQAYFDTLTSLPNRFLALDRLSQMLTEAERN-NEKIAVLFLDL 305

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +KKIND LG  +GD VL+    R+ ++L+  D + RL G+ F ++L     +      
Sbjct: 306 DDFKKINDSLGHEIGDKVLIQSAHRLKQVLREGDTVGRLGGDEFIVLLRGVTENHDALVI 365

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + KS   P  +  RE+ +T SIG A    +   +S++L+NA+ AMY AK  G N   
Sbjct: 366 TENLLKSFREPFVIDGRELMLTLSIGVAISPENGRCASDLLRNADTAMYKAKDLGRNTYS 425

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F             ++E +  A+E +E  L Y P   +  ++I G+EAL++W +   GN
Sbjct: 426 FFSKKMNTMMLRRFEVEEQMHGALERNEFELYYQPQFDVKKQKITGVEALLRWHNSVLGN 485

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++  EF+ IAE   +I  I  F++++    +  W++  +     + +N++     D+ L 
Sbjct: 486 VTPDEFIPIAEHTGLIIPIGRFVIKQALGFLNKWQN-IHQQKFTMAVNLSPCQFRDSTLL 544

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  +S+T      ++L  +E V+M         L  + ++GI L++DDFGT  S LS
Sbjct: 545 GFIKDSLSETNVIAEHLELEITEGVLMSGQSHIHDALVEISELGIKLSMDDFGTGYSSLS 604

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL    FD +K + S + G    +    ++ +II MA ++  T++A+ +  +  +  L  
Sbjct: 605 YLRQYAFDVLKIDQSFIRGIPLNKADCELVNTIIAMAHSLGLTVVAEGVETKEQLTLLEE 664

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
           +GCD +Q  + + P+    +L  
Sbjct: 665 LGCDLVQGYYFSKPIPAKQLLDF 687


>gi|237801120|ref|ZP_04589581.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023977|gb|EGI04034.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 719

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 148/580 (25%), Positives = 268/580 (46%), Gaps = 26/580 (4%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN-- 451
                + +  E+ + A   S D +   +I   R V        + G ++  + G   +  
Sbjct: 146 RAQAALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFCRLTGFSAQEVVGRTAHEI 205

Query: 452 --WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             W   +        R  +   +  +      E   R  +     + I +  ++    + 
Sbjct: 206 GIWTDTL-------QREYMIDELRLKGRVHHREMNGRDKNGDPLVLDISVDFITL--NET 256

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +  A DI + K +   I   A+ D LTG+PNR   +DRL   L L     NLR  ++
Sbjct: 257 ACLLMNARDIGQLKNAQAQIHHLAYHDPLTGLPNRALLMDRLGQQLSLLK-HQNLRGALL 315

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + SL 
Sbjct: 316 FLDLDYFKHINDSLGHPVGDSVLNVVAARLEASVRQEDTVARLGGDEFVVLICGLDGSLD 375

Query: 630 -----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +   +  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y A
Sbjct: 376 EVTRKVRVLSDNLRVLLAEPMFLDGHRLQVTPSIGIVLIPDDGLTPADVLKRADIALYRA 435

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  + F VS  +  S R+ ++ DL +A+  +E +L +   +   D +I G EAL+
Sbjct: 436 KDAGRNTSQFFHVSMQQAVSKRLQLENDLRMALTRNEFHLHFQAQVDCRDNQITGAEALL 495

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINI 800
           +W HP++G +   +F+ I EE  MI  +   +L+   +       Q         + +NI
Sbjct: 496 RWQHPEYGLLPPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVAKDRFLMGVNI 555

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +    N+  E ++  + +     S +KL  +E +V+ N + + L +  L+ +G+S  +
Sbjct: 556 SPRQFRQNDFVERVEHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMRSLKSLGVSFAM 615

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P DT+K + S +    +      I+R+I+ MA++++  +IA+ +
Sbjct: 616 DDFGTGYSSLTYLKRLPVDTLKIDQSFVQDAANDPNDAEIIRAIVAMAQSLKLNVIAEGV 675

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
                +  L ++GC   Q    + PL       LL+ + P
Sbjct: 676 ETPEQLAFLEKVGCYNYQGYLFSEPLPGPEFESLLQLKRP 715



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 8/153 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +   G+R  LA+  +    WD D+V +R+  +   A + G+ +         +  
Sbjct: 18  DALRLLKETGDRLQLALDLAQMGTWDLDVVSNRMQASTQTAYLHGMGAQPFDDDAERFFS 77

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   +R        + V      LQ  +R +  D     +  R R   ++ G + R  G
Sbjct: 78  RLPTEERRRICDAYQAAVDNHDDYLQIIYRFQLIDGSSRLLESRARLYRDAQGQLSRLAG 137

Query: 515 IANDITEQK-----KSLEGILCNAFQ---DNLT 539
              DIT+++     ++ E     AF    D++T
Sbjct: 138 TLMDITQKRAQAALEASEEKFAKAFHSSPDSIT 170


>gi|83592879|ref|YP_426631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575793|gb|ABC22344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 764

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 154/589 (26%), Positives = 265/589 (44%), Gaps = 19/589 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             L+       + A       +       S AV  S   +   D         P    I 
Sbjct: 166 GALLSMVTFVDITARRESEAAVIK----LSHAVEQSSASIVITDADGRIEYANPAFTKIS 221

Query: 439 GLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G  +    G   + L   +     + +R +  +      G  + EF  R  D   +W + 
Sbjct: 222 GYTAQEAIGRRPSILKSGLVPA--ETYRALWQTITNG--GEWRGEFHNRRKDGTLYWEMA 277

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I P+ ++ G I  ++ + +D+TE+K     +   A  D LTG+PNRQ  LDR++T LDL
Sbjct: 278 SISPIRDARGKITNFVAVKDDVTERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDL 337

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +   D  R  VM +DID++K+IND +G A GD +L     R+  +L+  D L RL G+ F
Sbjct: 338 ARRHDR-RVAVMFMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEF 396

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++        +    A  + +    P  +  RE+ V+ SIG +       T+  +++NA
Sbjct: 397 LVVAPGLRWESEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQALMRNA 456

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK  G +    F      + R  +  +  L  AV +  LYL   PII   D  +
Sbjct: 457 DAAMYLAKGGGRDAAHFFTPDIEAAARRRMLIENGLRTAVSDGSLYLALQPIIACADHTM 516

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +  EAL++W HP+ G +  SEF+ IAEE  +I+AI  +++E  AR ++S  D        
Sbjct: 517 IKAEALLRWTHPQLGGVPPSEFIPIAEESGLIRAIGAWVIEEAARLLVSL-DPPRDGAFR 575

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INIAS       L   +  ++++    P  +++  +E +++         +  LR +G
Sbjct: 576 LGINIASSQFT-GGLHHHVAGMLARYDLDPRMLEIEITERMLLDPSPAILEQVDALRAMG 634

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           +S+ +DDFGT  S LSYL     DT+K + + ++  T++    A++ +I+ +   +   +
Sbjct: 635 VSIAIDDFGTGYSALSYLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAV 694

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +A+ +      + L  +  D +Q   +  P    +I   L    P    
Sbjct: 695 VAEGVETADQARLLGELAVDALQGYFLGRPTTAEAISDRL---NPGTGR 740



 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 47/181 (25%), Gaps = 28/181 (15%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            +   ++  ++      +         +       +  +  D     V        ILG 
Sbjct: 13  FLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGFYVVDGDDRIVMANAAAGRILGY 72

Query: 441 ASGSMHGP-IRNWLPYIHINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
               + G            +D D        L+  V  RR         R    +   + 
Sbjct: 73  TQDDLIGACAHALFHARSADDPDPVPLEECRLNRAVRERRAAFLDVGHFRHRSGKIIAVE 132

Query: 497 IRIRPMSN-----------------------SNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   P+++                       + G +L  +    DIT +++S   ++  +
Sbjct: 133 VSCNPVADTLAEEGRRGGLLGWLLDGDDAEGAPGALLSMV-TFVDITARRESEAAVIKLS 191

Query: 534 F 534
            
Sbjct: 192 H 192


>gi|56477083|ref|YP_158672.1| hypothetical protein ebA2924 [Aromatoleum aromaticum EbN1]
 gi|56313126|emb|CAI07771.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 948

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/630 (22%), Positives = 256/630 (40%), Gaps = 17/630 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDND--IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
               +     + L    +  +     +  P     +  I+  +G+  +    +       
Sbjct: 326 IGRAIGLGSLVLLPPLASGFVLARTQLWIPPAAATIGFIIGYLGWFAVDLRRSRRGLRHA 385

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
                      +    D V   D     V   P    + GL            L      
Sbjct: 386 RQDADA----TLRSIADAVVTVDDDCRIVLMNPVAERLTGLPLAGAQQRRLGELLDTFTE 441

Query: 460 DRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            R      L   +  RR  RL      R  D     + + I P+          +   ND
Sbjct: 442 QRAQIDETLGVCLQQRRMIRLPEPIAWRMPDGTVCALRLTISPIGE---RAEGAVLAFND 498

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE   +   +   A  D LTG+PNR   LDRL   L  +         ++ +D+D++K+
Sbjct: 499 VTEALAATSRLEHEATHDTLTGLPNRALLLDRLHHALAQADRR-CTMIALLFVDLDRFKR 557

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD VL  +  R+   ++  D +AR  G+ F +++ + ++   +A  A  M 
Sbjct: 558 INDSLGHHAGDRVLEIVAERLTAAVRGGDTVARWGGDEFVVLMENLDDQPAVAAIAHKMI 617

Query: 639 KSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + +   +       + ++ SIG          +  +L  A+ AMY AK +GG     +  
Sbjct: 618 ELLERDVEAEPGTNLALSCSIGIGVGPRDSADAGTLLLMADRAMYRAKRQGGGSYTFYSP 677

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  DR+ ++  L  A++N E  L Y P I +    +VGLEALI+W       I   
Sbjct: 678 EMNTWSRDRLKMESALRAALQNREFELHYQPQIDIRSGRLVGLEALIRWRRADGELIRPD 737

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AEE  +I+ I  +++         W+ +    P+ + +N++++   D  + + ++
Sbjct: 738 AFIPAAEESGLIRGIGDWVIREATSQAARWKSEGL-LPVPLAVNVSAQQCSDMNVVDTIR 796

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + +  +  +P+ +K+  +ES  M + ER   LL  + ++G+ + +DDFGT  S LS L  
Sbjct: 797 SALEDSGVAPAMLKIELTESTAMHDAERVAELLSSIDRLGVGVAVDDFGTGYSSLSLLKR 856

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P   +K + S +          AI+R  I +A ++  T++A+ +  +  ++ L R  C+
Sbjct: 857 FPISELKIDKSFVHDITSDADDAAIVRGTIALAHSLGMTVVAEGVETQAQLRFLARHRCN 916

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             Q    + PL  + +   L+   P ++ T
Sbjct: 917 IAQGLLSSPPLPADEVRNWLEASAPGLRRT 946


>gi|319760863|ref|YP_004124800.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317115424|gb|ADU97912.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 1100

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 149/552 (26%), Positives = 266/552 (48%), Gaps = 12/552 (2%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
            R S A+  S   V   D+  + +      + + G ++  + G     L   +    R  +
Sbjct: 547  RLSEALEQSPHQVVITDVRANVLYVNRAFSEVSGYSAQEILGKNPRMLQSGLTP--RSVY 604

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +       +    Q E   R  +   +  I+ + P+ + +G +  Y+    DIT Q++
Sbjct: 605  EEMWRRLPQGQ--PWQGELVNRRKNGHIYTEIVSLYPIRDLSGQVTHYVAHKEDITVQRE 662

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            + E I   +  D LTG+ N++SF +RL   ++ +      R +++  D+D +K IN+ LG
Sbjct: 663  AEERIQALSNFDTLTGLLNKKSFDERLALAIERAGASHG-RLSMLWFDLDNFKLINESLG 721

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               GD++LV    R+   L   + LAR SG+ F  I+  + +   +A  A    + +   
Sbjct: 722  HTAGDELLVEAANRLRSCLGTQNALARYSGDAFVAIVP-QADQASVALMAQEALRLLQTA 780

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             ++    ++V+AS G A +     T+  +   AELAMY  K  G N +  F        +
Sbjct: 781  TSVQGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFAPEMQAHTQ 840

Query: 705  VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
              ++    L  A    EL+LVY P   L    +VG EAL++W HP+WG +S +EF+ IAE
Sbjct: 841  RSLELAAGLKDAARKGELFLVYQPQRALGSGALVGAEALLRWRHPQWGLVSPAEFIPIAE 900

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            +   I AI+ +++E+ A+ + +W D A +PP+ + +N+++      +L E +  ++ +  
Sbjct: 901  QSGAITAIDFWVVEQAAQQLRAW-DAAGLPPLVVAVNVSAAQFARPQLAEELLHILQRVD 959

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             SP RI++  +E+V + +PE +   + RL  +G  + LDDFGT  S +SYL     D +K
Sbjct: 960  VSPQRIEVELTEAVALKHPELAETTIRRLHDMGFKVALDDFGTGYSSMSYLKRYTIDKLK 1019

Query: 883  FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             + S +    EK   +AI+ +I+ MA ++  + +A+ +        L   GCD IQ    
Sbjct: 1020 IDQSFVRELAEKTSDMAIVTAIVRMAHSLHLSTLAEGVETAEQAALLHDCGCDEIQGYWY 1079

Query: 941  ASPLGFNSILKL 952
            + PL   +    
Sbjct: 1080 SRPLEPRAFEAF 1091



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/383 (10%), Positives = 99/383 (25%), Gaps = 38/383 (9%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
           R  +L P      ++     + +  +   +     E  I    +  +L++  ++    + 
Sbjct: 75  RDLVLGPGLLGVAILDMSHCLSYAGMPDFITPNGPEKAILFWLAARSLAALALLCAAFWP 134

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSF--------------YYPMVTASIARITLASIV 319
              R   ++G           +LF  +               + P V  +  +I     +
Sbjct: 135 Q--RHDNRLGPRARCWSLACVLLFVGAVHYVVLLHPQSVPPTFIPGVGLTKFKIDFEYGL 192

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
           +          +    +        + +  + + +         N      + G L  I+
Sbjct: 193 IAAYVLAGMGFLTHLRQDREFGLTRLALAAFTMAMGEFFFTLYANVTDIYNVTGHLYKIM 252

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                     V       Q + +   +    +    D++++ +     ++   + A+ L 
Sbjct: 253 ACAFLYRGLFVETVQAPYQELQASEAQHRAMLDTLPDLLFELNRQGVYLSVHANDASKLA 312

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +G + G     L  I             +            FR+       H   + I
Sbjct: 313 APAGQLLGRR---LGEILPAQAAAACLDALAEAERSGVARGQRFRLALPSG-VHHFELAI 368

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL----------- 548
              +N  G    Y+ +  DIT      + I   A         N                
Sbjct: 369 ARKANPAGREDTYLTLVRDITATVHDEQRIAFEAR-------LNASLLDLQHSDVQELEA 421

Query: 549 DRLTTILDLSATDDNLRPTVMVI 571
           D L   +       +    V+  
Sbjct: 422 DFLQRGIRHVERLTHSPFAVLHF 444


>gi|209525642|ref|ZP_03274180.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira maxima CS-328]
 gi|209493975|gb|EDZ94292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira maxima CS-328]
          Length = 612

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/535 (25%), Positives = 248/535 (46%), Gaps = 9/535 (1%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V        + G       G     L      DR      +   +             R
Sbjct: 73  IVFVNKAFTRMTGYGPTEAIGRTPRILQG-EKTDRT-ILERMKLDLKDGGVFYGQTINYR 130

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D         I P+ N    I  Y+ I  D+TE++     ++  A  D+LTG+ NR  
Sbjct: 131 -KDGSEFVNEWHIEPIYNDRQQITHYLAIQRDVTERQNQHNRLIYEANHDSLTGLYNRGY 189

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+  L   +D +    +    ++ +D+D++K IND  G   GD +L+ +  R+   ++  
Sbjct: 190 FITELQKAIDRTQNCQDYLFGLLFMDVDRFKLINDSFGHQAGDQLLIEIGDRLQSCIRPQ 249

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV--TASIGFASWT 664
           DIL+R  G+ F II+    +  +I+     ++++I  PI L E  +    + SIG A  +
Sbjct: 250 DILSRWGGDEFAIIIDDIQDLSEISQLTNKIQQTIKKPIILGEDHLETVTSLSIGIALSS 309

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
                S++ML++A+ A+Y AK RG      F   +      ++ ++ DL  A++  EL L
Sbjct: 310 MGYNCSADMLRDADTALYRAKDRGKGSYAIFTQAMHHRVRQQLQLETDLRYALKREELLL 369

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PII +    IVG E L++W+H   G IS  +F+ +AEE  +I  +  +++E+     
Sbjct: 370 NYQPIISMKTNRIVGCEVLLRWEHGTLGLISPEQFIPMAEETGLIVKMGDWVIEQACIQA 429

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W       P F+ +N+++K L++  + E ++ ++  T  SP  I+   +E+ +  + E
Sbjct: 430 KQWECIYQDAPPFLSVNLSTKQLINQGIVEKIKEILEATKCSPELIRFELTETAIAESTE 489

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +   L +++ +GI L +DDFGT  S LS L   P DT+K + S + G   +E +  I  
Sbjct: 490 VAVTTLRKIKDLGIRLCIDDFGTGHSSLSRLSCFPIDTLKIDRSFIQGMSASEHQTKIAY 549

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ +A+++    IA+ I       +L   GC+  Q   +A P+      ++L +
Sbjct: 550 AIVKLAQSLGMETIAEGIENLEQFCQLKSWGCELAQGFLMAQPIASKIFQEVLNQ 604


>gi|229031376|ref|ZP_04187378.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228729941|gb|EEL80919.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 591

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 146/589 (24%), Positives = 276/589 (46%), Gaps = 11/589 (1%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L   L      +   V        Y S+ +    ++         D ++  D+    +  
Sbjct: 6   LTKRLQAFNAQLEEKVTLRTSDLVYKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNV 65

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
               + +LG  +  + G        I   D+    + L+         LQ   +    D 
Sbjct: 66  NKAGSMLLGAPTDELLGETC--FSIILDEDKHKLASALEKVKQQESASLQLSSQY--KDG 121

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
             +++ + I P+   +G I     +  DIT  KK  E I   AF D +T I NR  F  +
Sbjct: 122 FTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKK 180

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L  ++  + T D+    ++ +D+D++K IND LG + GD +L  + +R    L     L+
Sbjct: 181 LKRVIKNARTTDS-EFALLYLDLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLS 239

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I++ +  +   +      + + +  P  + E  +T++ SIG A +  S I +
Sbjct: 240 RIGGDEFTILIENYTDEDSLFQLCNRLFECMEKPFVIHEHTLTLSLSIGIAIYPHSGIDT 299

Query: 671 SEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           + +LKNA +AMY   AK      +    ++     R+ +++DL  A++N EL+L+Y P +
Sbjct: 300 ATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQPQV 359

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  + LE+    +  W   
Sbjct: 360 DSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLEQACEQMKRWHA- 418

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + I +N+++K+    +  + + + ++ T    S + L  +E + M +   + + L
Sbjct: 419 LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLELTERIAMMDERETLIKL 478

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMA 906
             L+ +GI +++DDFGT  S L+YL   P DT+K     +  + + +  + I+++II +A
Sbjct: 479 RTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLA 538

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  +LL+ 
Sbjct: 539 NTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHTNAFTELLES 587


>gi|197117046|ref|YP_002137473.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
 gi|197086406|gb|ACH37677.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
          Length = 742

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 139/637 (21%), Positives = 283/637 (44%), Gaps = 32/637 (5%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
               A+          +  + +  ++   L   ++  AL+GG ++            + A
Sbjct: 107 RPVFALSFPVHDAGHEVALLEVSRSLQPVLIKTLL--ALIGGALVGAYAFFRLRTVPLRA 164

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--------VTTTPDIATILGLASGS 444
                + +    E+         + +  +   R              P    + G +   
Sbjct: 165 LDEAYRVLKQSEEKYRSVYESLNEGLALYRASRREDGSADLVLTDVNPAAINVFGFSRDD 224

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G I   L  +     +     L +     RG +  +   + +  +   +     PM  
Sbjct: 225 IGGWITELLDGLFAECAEQVFGALQA-----RGEVSLDLE-QNSTGRIFSL--TAFPMG- 275

Query: 505 SNGDILRYIGIA-NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                   +     D+TE+K++ E +   A+ D+LTG+ NR+  LDR+   +  +   + 
Sbjct: 276 -----YGMVATLLEDVTEKKRTAEQLERLAYYDSLTGLLNRRMLLDRMEQAIGTAQR-EG 329

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           ++   + +D++ +K IND LG   GD +LV + +R+ ++++  D LARL G+ F +    
Sbjct: 330 VKVATLFMDLNGFKVINDTLGHKAGDQILVEVAKRLQKMVRKRDTLARLGGDEFVVAATF 389

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E +    +  A  +  +I     + +RE+ V  S+G + +         +LKNA++AMY+
Sbjct: 390 EKD-ENASAIAKNLINAITPVYQVCDREVYVGVSVGISIFPDDGDVPETLLKNADIAMYN 448

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G      +  +++    +R+ ++  L  AVE  E +L Y PI+      I  +EAL
Sbjct: 449 AKSQGQGGFCFYSAQLNERLHERMQLEFKLRGAVEREEFFLEYQPILDSKTGRITAVEAL 508

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+ P+ G +    F+ +AE+  +I  +  ++L      +  W+D   + P+ + +NI+
Sbjct: 509 LRWNDPEKGRVMPDSFIPLAEDTGVILPLGEWVLRTACAKLRQWQDA-GVMPVRMAVNIS 567

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +     +L + ++  + ++   PS ++L  +E+ ++ N E +   L RL+ + +S+++D
Sbjct: 568 GRQFTQGDLSKTVEDALLQSGVHPSWLELELTETCLIKNVEETVRKLCRLKGLCVSISID 627

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL   P D +K +   +          AI+ +II +AK ++  +IA+ + 
Sbjct: 628 DFGTGYSSLQYLKNFPIDHLKIDRGFINNVCELPDDRAIVDAIIGIAKAMDLHVIAEGVE 687

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                + L R GCD  Q  +   PL    +L++L  +
Sbjct: 688 TRQQAEHLMRRGCDEFQGYYFYRPLPEEKLLEVLASK 724


>gi|332529343|ref|ZP_08405304.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624]
 gi|332041141|gb|EGI77506.1| PAS family GGDEF/EAL protein [Hylemonella gracilis ATCC 19624]
          Length = 772

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 152/732 (20%), Positives = 288/732 (39%), Gaps = 25/732 (3%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           +          L          L +W          +++ ++                  
Sbjct: 46  MTANFGSGVLTLWFFTPDVPFGLWVWMFALCTVCGLAMLNWVRR--RGRPVLTASSRSVH 103

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
                  +L  +    P +    + + L   ++     ++  G            AW   
Sbjct: 104 RATVHALLLAAVWGVLPALWFEGSAVGLQLPLVALISGMLGAGSFVLSPLPYASVAWAAT 163

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
                   +         +    L+     IV++          A            +  
Sbjct: 164 ISLGSIWALLDVG-SAAAVSVGLLMSLYAPIVVIGSLVNWYKSTALLRAQAQSARQEQML 222

Query: 408 SLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           SL +      +GD +W+ D        +  +  +L L    + G     L  +       
Sbjct: 223 SLLLQDFEQNAGDALWETDADGRLRHASQRLRELLCLP---LEGQEAEPLLALLSRRGIT 279

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              +L+  +   R        ++      H +++  +P+S+ NG  L + G+ +D+TE+ 
Sbjct: 280 GAGLLEQQLNTGRPFRDLSLSIQDERGTVH-LLMNGKPLSDENGAFLGWRGVLSDVTEKV 338

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +   A  D+LTG+ NR    D L  ++            ++ ID+D++K +ND  
Sbjct: 339 RHEETLRRLAHTDSLTGLANRFMLRDTLNRLIAQKR-----PLALLAIDLDRFKAVNDNH 393

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD VL ++  R+   L    +LARL G+ F ++L    +  K    A  +  ++A 
Sbjct: 394 GHSAGDAVLQAVAERLRAHLPTEALLARLGGDEFAVVLSEPADLPKADTLAQRVVDALAQ 453

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
           P+ +  R + + AS+G  +  +  ++   +L  A++AMY AK  G      +        
Sbjct: 454 PVEIGSRSLRIGASVGLTTRHNEPVSLDGLLVQADMAMYAAKESGRGRWARYTPLLGEHS 513

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ I++ L  A+E  EL L +   + L    I G EAL++W HP  G IS  EF+ +A
Sbjct: 514 RRQLAIEQGLRNALERGELMLHWQAKLDLASARITGAEALMRWTHPTLGPISPGEFIPVA 573

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I A+  + L    R             + + +N++   LL     + ++  ++ +
Sbjct: 574 EQCGLIDAMGQWALREACRAGTQELA-----GLTVAVNVSPAQLLSGHFLDHLRETLAVS 628

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +ES+ M + E++  LL  +R+ G+ L LDDFGT  S LSYL   PFDT+
Sbjct: 629 GLEPGRLELEITESLFMEDAEQALQLLRSIRQTGVHLALDDFGTGFSSLSYLRSFPFDTL 688

Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T    K    AI+R I  +A  +    + + +     ++ +   GCD +Q   
Sbjct: 689 KIDQSFVTELLSKDQSRAIVRMIAELAATLGMRTVTEGVETMEQMQAVRAAGCDEVQGYL 748

Query: 940 VASPLGFNSILK 951
           ++ P       +
Sbjct: 749 ISRPRPLAEFQR 760


>gi|53804907|ref|YP_113464.1| sensory box protein [Methylococcus capsulatus str. Bath]
 gi|53758668|gb|AAU92959.1| sensory box protein [Methylococcus capsulatus str. Bath]
          Length = 976

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/602 (23%), Positives = 271/602 (45%), Gaps = 9/602 (1%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
                   +     +P      V  ++ +  T +   L      + + +  +     V  
Sbjct: 370 SAGTAIGLIAVMHGEPMAEPESVTALLQLVATRVAAALERDRSERQLKAREQEFRSLVEH 429

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S D V  +D    R+   P +    G+    + G      P         ++  +     
Sbjct: 430 SPDTVARYDRDCRRIYANPRLVEEAGVPLSELLGKTPVEFPGG--ESSRAYQAKIRQVFE 487

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 ++E   + A  +     IR+ P    +G+++  + I  DITE       I   A
Sbjct: 488 T-GEPAEFELSWKTAQERELISHIRLTPEFGFDGEVMHALAIGRDITEIDAYRRRIHHLA 546

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D+LTG+PNR+    R+  ++D +      +  +M++D+D++K+IND LG  +GD +L 
Sbjct: 547 FFDSLTGLPNREMLNKRIREVMDGNPR-PGRQFALMMLDLDRFKEINDTLGHGIGDLLLG 605

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              RR+   +   D +ARL G+ F +++ +   S ++   A  +  + A P  +  RE+ 
Sbjct: 606 RAARRLLGAVGKDDTVARLGGDEFAVLVPAPAASQELTALAGRILDAFARPFLIEGRELF 665

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
           V+ S+G A +         + + A+ AMYHAK +G N+ + +     +  ++R+ I+  L
Sbjct: 666 VSVSLGIALYPRDCTGIDTLFRYADTAMYHAKRQGRNNFQFYSAELTARAAERMRIESAL 725

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+  +EL L +   I ++   IVG EAL++W+ P  G I   +F+ IAEE  +I  I 
Sbjct: 726 RRALGRNELELHFQSQIDMVSGTIVGAEALLRWNRPGRGIILPRKFIPIAEETGLIVGIG 785

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +  + +++W       P+ + +N++++  + N+L   +Q ++ +T   P  ++L 
Sbjct: 786 DWILAQACQAVVAWNRH-REQPLRVAVNLSTRQFILNDLAGTVQRILDETGCRPEWLELE 844

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+++ +    R  L    ++G+S+ +DDFGT  S LSYL   P   +K +   + G 
Sbjct: 845 ITESLLLEDSRGVRATLDAFDRMGLSIAIDDFGTGYSALSYLHRFPVKRIKIDRCFVHGI 904

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              R    ++++II +A+ +   ++A+ +        L   GC   Q      P      
Sbjct: 905 PSDRCKSELVKAIISIAQALGLEVLAEGVETPRQAVYLQAHGCRLGQGYLFGEPQPLVGF 964

Query: 950 LK 951
             
Sbjct: 965 EA 966



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 6/155 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGL 440
              +  +      Q      +R +     +   ++  +   D        +  +  ILGL
Sbjct: 115 REAEARMKELERLQAEREGLDRLARFAQCAPGFMYTVEARADGRLVMTYASSGVEDILGL 174

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +  ++   I +    I   DRD                   E+R+        W+  R  
Sbjct: 175 SVEAVLADIGHVHSRIVPEDRDRVMRC-KEASARELQPFTEEYRILHPVKGERWLEARSV 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           P    +G I  + G   DITE+K+  E +   A +
Sbjct: 234 PERQKDG-ITLWHGFLIDITERKRMEETLQFIAQR 267



 Score = 37.6 bits (86), Expect = 9.9,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 6/107 (5%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +          G+   ++           +  D ++ R  L+        + +   RV
Sbjct: 24  RIIYANEAACRHFGVGLETLLTWCPLDFDPTY--DEESLRLALERHRQTGGTKFETLHRV 81

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             A      + +    +   +G +L  + I+ DI  ++++   +   
Sbjct: 82  --AAGMEIPVEVTAN-LFEQDGRLL-AVCISRDIRPRREAEARMKEL 124


>gi|330822768|ref|YP_004386071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Alicycliphilus denitrificans K601]
 gi|329308140|gb|AEB82555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alicycliphilus denitrificans K601]
          Length = 1100

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 149/552 (26%), Positives = 266/552 (48%), Gaps = 12/552 (2%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
            R S A+  S   V   D+  + +      + + G ++  + G     L   +    R  +
Sbjct: 547  RLSEALEQSPHQVVITDVRANVLYVNRAFSEVSGYSAQEILGKNPRMLQSGLTP--RSVY 604

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +       +    Q E   R  +   +  I+ + P+ + +G +  Y+    DIT Q++
Sbjct: 605  EEMWRRLPQGQ--PWQGELVNRRKNGHIYTEIVSLYPIRDLSGQVTHYVAHKEDITVQRE 662

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            + E I   +  D LTG+ N++SF +RL   ++ +      R +++  D+D +K IN+ LG
Sbjct: 663  AEERIQALSNFDTLTGLLNKKSFDERLALAIERAGASHG-RLSMLWFDLDNFKLINESLG 721

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               GD++LV    R+   L   + LAR SG+ F  I+  + +   +A  A    + +   
Sbjct: 722  HTAGDELLVEAANRLRSCLGTQNALARYSGDAFVAIVP-QADQASVALMAQEALRLLQTA 780

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             ++    ++V+AS G A +     T+  +   AELAMY  K  G N +  F        +
Sbjct: 781  TSVQGHPVSVSASAGVAVYPDDARTAGTLASAAELAMYRVKEDGRNGLRFFAPEMQAHTQ 840

Query: 705  VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
              ++    L  A    EL+LVY P   L    +VG EAL++W HP+WG +S +EF+ IAE
Sbjct: 841  RSLELAAGLKDAARKGELFLVYQPQRALGSGALVGAEALLRWRHPQWGLVSPAEFIPIAE 900

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            +   I AI+ +++E+ A+ + +W D A +PP+ + +N+++      +L E +  ++ +  
Sbjct: 901  QSGAITAIDFWVVEQAAQQLRAW-DAAGLPPLVVAVNVSAAQFARPQLAEELLHILQRVD 959

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             SP RI++  +E+V + +PE +   + RL  +G  + LDDFGT  S +SYL     D +K
Sbjct: 960  VSPQRIEVELTEAVALKHPELAETTIRRLHDMGFKVALDDFGTGYSSMSYLKRYTIDKLK 1019

Query: 883  FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             + S +    EK   +AI+ +I+ MA ++  + +A+ +        L   GCD IQ    
Sbjct: 1020 IDQSFVRELAEKTSDMAIVTAIVRMAHSLHLSTLAEGVETAEQAALLHDCGCDEIQGYWY 1079

Query: 941  ASPLGFNSILKL 952
            + PL   +    
Sbjct: 1080 SRPLEPRAFEAF 1091



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/383 (10%), Positives = 99/383 (25%), Gaps = 38/383 (9%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
           R  +L P      ++     + +  +   +     E  I    +  +L++  ++    + 
Sbjct: 75  RDLVLGPGLLGVAILDMSHCLSYAGMPDFITPNGPEKAILFWLAARSLAALALLCAAFWP 134

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSF--------------YYPMVTASIARITLASIV 319
              R   ++G           +LF  +               + P V  +  +I     +
Sbjct: 135 Q--RHDNRLGPRARCWSLACVLLFVGAVHYVVLLHPQSVPPTFIPDVGLTKFKIDFEYGL 192

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
           +          +    +        + +  + + +         N      + G L  I+
Sbjct: 193 IAAYVLAGMGFLTHLRQDREFGLTRLALAAFTMAMGEFFFTLYANVTDIYNVTGHLYKIM 252

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                     V       Q + +   +    +    D++++ +     ++   + A+ L 
Sbjct: 253 ACAFLYRGLFVETVQAPYQELQASEAQHRAMLDTLPDLLFELNRQGVYLSVHANDASKLA 312

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +G + G     L  I             +            FR+       H   + I
Sbjct: 313 APAGQLLGRR---LGEILPAQAAAACLDALAEAERSGVARGQRFRLALPSG-VHHFELAI 368

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL----------- 548
              +N  G    Y+ +  DIT      + I   A         N                
Sbjct: 369 ARKANPAGREDTYLTLVRDITATVHDEQRIAFEAR-------LNASLLDLQHSDVQELEA 421

Query: 549 DRLTTILDLSATDDNLRPTVMVI 571
           D L   +       +    V+  
Sbjct: 422 DFLQRGIRHVERLTHSPFAVLHF 444


>gi|228933822|ref|ZP_04096668.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228825894|gb|EEM71681.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 803

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 159/755 (21%), Positives = 308/755 (40%), Gaps = 22/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 56  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 111

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 112 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 170

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 171 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 230

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 231 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQSGSILLGKDSA 290

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPM 502
           ++ G            D+    T L   +G R      + RV+  + +  +     I P+
Sbjct: 291 ALIGKEC--FSIFLDEDKPELETALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 346

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +    
Sbjct: 347 M-IEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQ 405

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ 
Sbjct: 406 G-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVH 464

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY
Sbjct: 465 NHT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMY 523

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EA
Sbjct: 524 SAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEA 583

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + + IN+
Sbjct: 584 LIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINL 642

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++
Sbjct: 643 SAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSI 702

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ +
Sbjct: 703 DDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGV 762

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L +  C  IQ  + + P   ++ +  L
Sbjct: 763 ETKEQLTVLQQNACYLIQGYYYSKPANEDAFINFL 797


>gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Burkholderia thailandensis
           MSMB43]
          Length = 709

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/609 (22%), Positives = 258/609 (42%), Gaps = 17/609 (2%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
               A      + + +P  +  L   V                 +  + S   R      
Sbjct: 102 VAGFAAGGI--DYLTKPFQIVELAARVKTHLALRAAQR-QLVLANARLASSEARYRRLFE 158

Query: 413 GSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
            + D +   D+   R+T     +  +LG       G     +  +   +       L + 
Sbjct: 159 TASDGIILVDMAGSRITDVNASLVEMLGFERDHFVGRP---IGSVPPFEAVPECASLCAT 215

Query: 472 VGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +    G ++ E   +  A      +       +     I++      DITE+K++   + 
Sbjct: 216 LAA-SGEIRCEHTSLATATGTLLDVEFLASLYTVGGARIVQC--NVRDITERKQAEARVR 272

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR    + L   +  +  +      +M +D+D++K +ND LG  +GD 
Sbjct: 273 YMALHDALTGLPNRALLQEHLAQAIARARREGGCVAALM-LDLDRFKHVNDSLGHHIGDR 331

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L + + R+   L+  D +ARL G+ F I L   +      + A  +  +++ P  +   
Sbjct: 332 LLEAASMRLRGCLREGDTVARLGGDEFVIGLADVDGDQGAGEVATRVLTTLSRPFFVENH 391

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708
           E+ V  SIG + + +       +L+ A+ AMY AK  G      F    ++    R+ + 
Sbjct: 392 ELHVGCSIGISRYPADGEDVQTLLRAADTAMYDAKANGRGIYRFFTPELNAAAQQRLALA 451

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            D+  A +  E  L Y P +      I G+EAL++W HP+ G IS  +F+ + EEL +I 
Sbjct: 452 RDIRYAFDRGEFVLHYQPQVCTHSGAITGVEALLRWRHPEHGLISPLQFVPMLEELGLIV 511

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A+  ++L    +  + W+     PP+ + +N+++  L   ++   +   + +T  +   +
Sbjct: 512 AVGQWVLRTACQQSVQWQSAGL-PPVRMAVNLSAYQLQRGDIVRTVDEALRETGLAAEWL 570

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E++ + N + +  ++   +++G+SL+LDDFGT  S LSYL   P D +K + S +
Sbjct: 571 ELELTETMALYNAQEAIRIMREFKQLGVSLSLDDFGTGWSSLSYLRQFPIDRIKIDRSFI 630

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +     A+++ I+ +A ++    IA+ +        L    C  IQ   V+  L  
Sbjct: 631 RDVVTHPGASAVVQGIMTLANHLGLQCIAEGVETVQQFGFLQERACGEIQGFLVSPALPA 690

Query: 947 NSILKLLKE 955
           +    LL  
Sbjct: 691 HECAVLLAS 699


>gi|26987890|ref|NP_743315.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24982596|gb|AAN66779.1|AE016306_5 sensory box protein [Pseudomonas putida KT2440]
          Length = 861

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 147/621 (23%), Positives = 278/621 (44%), Gaps = 15/621 (2%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
               W         LW  +   L   +I   ++  L    +     +   ++     +Q 
Sbjct: 242 YHLTWNSPLPGQQMLWAVLPALLCALLILGLVMLYLFRHALRSSRAIGLTLVHLQQSNQA 301

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +  +R       + D +W+ D  +     +   A + G       G   N L      
Sbjct: 302 LEASEQRFRAVAESASDWIWETDRQQRLTYLSQRFANVTGYPVDGWLGHPLNQLLACDTT 361

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               +   L +    +   L+  +R    + Q  +  I  R +   +G  + + G A+DI
Sbjct: 362 PLSPWLDALTAAEPQQLANLRCTYR--DQNGQNRYCRISARAIW-RDGKAIGFRGTASDI 418

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T++  +   I   +  D LTG+ NR      L   L   +    L     ++D+D +K I
Sbjct: 419 TDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGSDSPPLTLL--LLDLDNFKPI 476

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A GD VL  +  R+ +  +  D++ARL G+ F ++L   +NS +I  F   +  
Sbjct: 477 NDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSEIDRFCARLIG 536

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
            +  PI    + + + ASIG A   +    + E+++ A++A+Y AK  G N    F   +
Sbjct: 537 LLQQPIVFENQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQAKADGKNTWRYFVAEM 596

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     R  ++ DL  A+ N E  L Y P  RL D  IV +EAL++W HP+ G ++   F
Sbjct: 597 NQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALVRWRHPQEGLLAPDTF 656

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I A+  ++L    R    W        + + +N++    L +++   ++  
Sbjct: 657 IPLAEQSDIIVALGRWVLREACRTAHDWPA-----DVLVSVNLSPAQFLRSDVVADVRET 711

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T +   R++L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL   P
Sbjct: 712 LLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLRTYP 771

Query: 878 FDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           FD++K +   ++G         A++++II + + +  T+ A+ +  E  +K L +  C  
Sbjct: 772 FDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEHQLKSLEKDRCHE 831

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q  +++ PL    +  LL +
Sbjct: 832 VQGYYLSKPLDSAGLTALLHQ 852


>gi|304310878|ref|YP_003810476.1| hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1]
 gi|301796611|emb|CBL44823.1| Hypothetical protein HDN1F_12400 [gamma proteobacterium HdN1]
          Length = 636

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 142/580 (24%), Positives = 263/580 (45%), Gaps = 18/580 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              ++              S  +  + AV     + V+  D         P   T+    
Sbjct: 23  TARLLVQAGQAVPEKAARPSQDQLLADAVFDAISEGVFIADREGFIEKANPAFLTLTQYK 82

Query: 442 SGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           S  + G    R W  ++      N R  +D+         + +  V     +     + +
Sbjct: 83  SEQIIGQHCSRLWEEHLSSGIFKNMRKGVDA-----ESSWRMDTTVVCNHGRVRPATLSV 137

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +  G +  YIGI  D  E+++S + I   A+ D+LT IPNR SF +RL   L  + 
Sbjct: 138 TAIRDLAGQVTHYIGILLDTAERRQSEQRIYRLAYYDSLTEIPNRVSFFERLDQALASAG 197

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   V+ +D+D++K IND LG   GD +L ++ RR+   ++  D++AR+ G+ F I
Sbjct: 198 -STGTSLAVLFLDLDRFKPINDSLGHGAGDQLLKAVARRLLYCIRENDLVARVGGDEFAI 256

Query: 620 ILISENNSLKIADFAI----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           +L   N   +    AI     +    A    +  R++  + SIG A +        E+++
Sbjct: 257 LLTRLNTPEEAESTAIITASRILAQFATAFMIEGRDVFSSTSIGIALFPRDGQLPDELVR 316

Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA++AMY AK  G N    +  S      +R++++  +  A+ NSE  L + P       
Sbjct: 317 NADMAMYAAKKAGKNAWHFYDHSMNEKAMERLVMENAMRKALNNSEFELYFQPQCEADSG 376

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + GLE L++W HP++G  + +EF+ +AEE  +I  I  ++ E+    +  W  Q   P 
Sbjct: 377 ALAGLEVLLRWQHPQFGIQTPAEFLALAEETDLINPIGEWVFEKALGTLEDWLSQGFDPG 436

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            ++ INI+S         + +Q L+ +    PS I+L  +E  +M +  RS+ +L  L  
Sbjct: 437 -YLAINISSTQFKRTNFADYLQILLRRHEMDPSYIQLEITEHAIMEDVARSQKILDTLSD 495

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
            GI + +DDFG   S L++L   P  T+K +   +          A+  ++I + K++  
Sbjct: 496 AGIRIAIDDFGVGYSSLNHLRRFPVHTLKIDRDFVRDLELEGGTQALTNAVIAIGKSLNL 555

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++IA+ +     ++ L   GC  +Q  ++++P+   ++++
Sbjct: 556 SVIAEGVETAGQLEYLRTHGCRRVQGHYLSAPMNAAAVME 595


>gi|241665425|ref|YP_002983784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|240867452|gb|ACS65112.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 902

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 149/595 (25%), Positives = 253/595 (42%), Gaps = 13/595 (2%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRD 426
                     I   +   ++   L      +    D  R + L    S + +    +   
Sbjct: 308 AYRRTALAGAIGSTLLMALLYATLRRSMSQRKQHIDEMRLASLVYASSSEAMMVTTLDGT 367

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +   P      G  +    G   + +     +        + + V  + G    E+ +R
Sbjct: 368 VIDVNPAFTVTTGYTAQEFKGQHSDAIRSECND--SAVVDTMRTAVTTK-GTWSGEYLIR 424

Query: 487 AADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
             D      ++ +   +    G   R + + +DITE+K++ E I   A  D LT +PNR 
Sbjct: 425 RKDGTEFPALLTVDTFAGHKLGAPSR-VALIHDITEKKRAEEVIWRQANFDTLTELPNRH 483

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  +L   +  +         ++ ID+D++K++ND LG   GD +L  + RRI  +++ 
Sbjct: 484 MFYAKLRQEILHARQAATA-VALLFIDLDRFKEVNDTLGHDQGDVLLKEIARRISAIVRG 542

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARL G+ F IIL +  ++   A    ++   IA P+ L E  + VTASIG A +  
Sbjct: 543 TDTVARLGGDEFTIILPNLPDAGAAAPIIRSLLARIATPVQLGEESVEVTASIGLALYPR 602

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
               +  +L  A+ AM+ AK  G N    F  +  R   +R+ I  DL +A+E  +L + 
Sbjct: 603 DADNAESLLVRADQAMFAAKSAGRNQWSVFTPALQRAEQERLRITSDLRIAIEQKQLAVH 662

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+ L    I   EALI+W HP  G I  ++F+ +AEE  +I  I  ++L     ++ 
Sbjct: 663 YQPIVDLRSGAINKAEALIRWTHPVRGEIEPADFIPVAEETGLIVQIGKWVLNEALTEVT 722

Query: 784 SWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            W        + + +N +  +      L +    ++ +    P  + +  +E  +M    
Sbjct: 723 RWHTVLGRH-MQVSVNKSPVEFRAAGQLGDSWADVVKRRAIRPGSLVIEITEGALMEGSA 781

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L RLR+ GI + LDDFGT  S LSYL     D +K + S +       K IA+  
Sbjct: 782 EVVDHLTRLRQAGIEIALDDFGTGYSSLSYLKRFDIDYIKIDQSFVRSLAHDPKDIALCS 841

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ MA  +   +IA+ I  E     L   GCDY Q      P+   +    + +
Sbjct: 842 AIVSMAHALRIKVIAEGIETEEQKAILVAAGCDYGQGHLFCPPVPPAAFEAFVAK 896


>gi|308188095|ref|YP_003932226.1| Heme-regulated cyclic AMP phosphodiesterase [Pantoea vagans C9-1]
 gi|308058605|gb|ADO10777.1| Heme-regulated cyclic AMP phosphodiesterase [Pantoea vagans C9-1]
          Length = 949

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 144/571 (25%), Positives = 261/571 (45%), Gaps = 23/571 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWDIVRDRVT-TTPDIATILGL 440
           Q +L     ++      ++ +L       +      V   D +   +         + GL
Sbjct: 384 QQILRARDLAEA--QSTQKTALSKFLDNIIANIPSCVIVEDAITREILLVNDRTQQLFGL 441

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   +     +    +     D F  + D  +    G  + E  +  A  +   +  R  
Sbjct: 442 SKALIVNKRPH--ECMSPELSDYFNNLADVALRSE-GMHEREQLLMTASGERI-LHTRAT 497

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            ++  +      + +  D+T+Q+ +   I   A  DNLT +PNR  F  RL+  L  +  
Sbjct: 498 AINGQDARRNYLMLLVEDVTDQRAADARIHHMAHHDNLTSLPNRILFRQRLSEALRTANQ 557

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  +  +D+D +K +ND LG  +GD++L S+ +R+   L+  D LAR+ G+ F I+
Sbjct: 558 TQRQTAALC-LDLDNFKNVNDALGHQIGDELLRSVAKRLRNTLRDQDTLARIGGDEFAIV 616

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L S  NS + +  A  + ++I  P+N+    ++V  S+G A  T+   T  ++L+ A++A
Sbjct: 617 LPSVANSEEASIVAQRLIEAIRPPVNVEGHNLSVGLSVGIALSTTITNTPEQLLRCADMA 676

Query: 681 MYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N  E F +        R +I+ DL  A+    L L Y PI       I+G 
Sbjct: 677 LYEAKRNGRNRYEHFTLEMDDVARSRRLIENDLRDAISGGHLRLYYQPITNGDHRTIIGY 736

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G I  ++F+ IAEE  +I  +  F L    R+  SW  +       + +
Sbjct: 737 EALMRWHHPIRGLIMPNDFIPIAEETGLIHMLGAFALYEACREAASWEGEQ-----SVSV 791

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++     ++ L   ++  + ++   P+R+++  +ESV++ +   +   L  L+ +G+ +
Sbjct: 792 NLSPLQFKNSSLVPVVEGALKESGLDPARLEVEITESVLLDDSLGNIRTLQNLKALGVQI 851

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL   PFD +K + S +    + R   AI+R+I  M+++++  I A+
Sbjct: 852 ALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMGDSREALAIIRAITGMSRSLDIQITAE 911

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  +    +L   GC   Q      P    
Sbjct: 912 GVESDEQFAKLRDEGCTLFQGFLFGRPQPSE 942



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 4/154 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATIL 438
           LIGFT +          Q    + E R  L V G  D  ++  D   + V          
Sbjct: 110 LIGFTAVCRDCTRQQEQQRKEREQEMRFRLLVEGVTDYAIYMLDQDGNVVNWNAGAQRAK 169

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  +  + G   ++  +    DR N     +    YR GR + E      D    W  + 
Sbjct: 170 GYVAEEIVGQ--HFSRFYSAQDRLNHIPSQNLQTAYRTGRFEDEGWRYRKDGSAFWAHVV 227

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           I  + +  G +L Y  I  D TEQ++        
Sbjct: 228 IDTIRDDQGKLLGYAKITRDCTEQQRVRSEQREQ 261



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 3/131 (2%)

Query: 401 FSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
               +R  L V G  D  ++  D+    V          G  +  + G   +        
Sbjct: 259 REQEQRFRLLVEGVTDYAIYMLDVDGVVVNWNAGAQRAKGYKAEEVVGQHFSLF--YSAQ 316

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R N     +  +  + GR + E      D    W  + I  + + +G ++ +  I  D 
Sbjct: 317 ERLNRTPEANLGIALKTGRFEDEGWRYRKDGSAFWAHVVIDAIHDDDGKLIGFAKITRDR 376

Query: 520 TEQKKSLEGIL 530
           TE ++  + IL
Sbjct: 377 TEGREQEQQIL 387



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                 +       +LG     + G         +  DR   +   +  +    GR + E
Sbjct: 26  PDGTVASWNGGGLHVLGYRPDEIIGQHAALF--YNDEDRRRGQPQRELDIAVTTGRYENE 83

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                 D    W  + I P+ +    ++ +  +  D T Q++        
Sbjct: 84  GWRCRKDGSSFWAHVVIYPIRDETAQLIGFTAVCRDCTRQQEQQRKEREQ 133


>gi|229174407|ref|ZP_04301939.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228608967|gb|EEK66257.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 800

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 155/711 (21%), Positives = 307/711 (43%), Gaps = 47/711 (6%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA------ 337
              +  I  +      ++ Y  +   +A  T+  + L Y   I++  + G   A      
Sbjct: 92  RKIYIFIFVLISSATFNYIYFYLNNHLATETITLLRLLYRIPILFIAIAGSISADRNSHK 151

Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              I                   I +   + ++  +  +        + ++I      +Q
Sbjct: 152 NYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQ 211

Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                                      + S+ +    ++         D ++  D+    
Sbjct: 212 NNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLHGVF 271

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +      + +LG  +  + G        I   D+    + L+         LQ     + 
Sbjct: 272 LNVNQAGSILLGAPTDELLGETC--FSIILDEDKHKLTSALEKVKQQESAYLQLS--SKY 327

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D   +++ + I P+   +G I     +  DIT  KK  E I   AF D +T I NR  F
Sbjct: 328 KDGFTYFLYVTIVPII-IDGQISGSYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 386

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +L  ++  + T D+    ++ +D+D++K IND LG + GD +L  + +R    L    
Sbjct: 387 HKKLKRVIKNAKTTDS-EFALLYLDLDRFKAINDTLGHSAGDHILEEVAKRFQSCLPSHT 445

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            L+R+ G+ F I++ +  +   + +    + +SI  P  L E  +T++ SIG A +  S 
Sbjct: 446 HLSRIGGDEFTILIENYTDEDSLFELCSQLFESIEKPFVLHEHTLTLSLSIGIAIYPHSG 505

Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           I  + +LKNA +AMY   AK      +    ++     R+ +++DL  A++N EL+++Y 
Sbjct: 506 IDITTLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNKELFILYQ 565

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  + L++    +  W
Sbjct: 566 PQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 625

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   + I +N+++K+    +  + + + ++ T    S + L  +E + M +   + 
Sbjct: 626 HA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLELTERIAMMDERETL 684

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903
           + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + + +  + I+++II
Sbjct: 685 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 744

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  +LL+
Sbjct: 745 TLANTLGMSVIAEGVETKEHVNFLQKNNCQFIQGYYYSKPIHTHAFTELLE 795


>gi|144900265|emb|CAM77129.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1036

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 248/572 (43%), Gaps = 16/572 (2%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            +         + + +   R    +    D +   D     V+    +  I G     + G
Sbjct: 455  RDTTEVTAAMRAVAAREHRIRAIMDTVLDGIVTIDEDGLIVSANLSVERIFGYPLSELIG 514

Query: 448  PIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                 +  +         D++        G        E   R  D     + + +  + 
Sbjct: 515  AN---VSILMPEPDAGRHDSYIKNYLQGQGGGLIGSGREVMARRKDGSLFPVHLSVSELR 571

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                 +  + G   D+TE K+  + +   A  D+LT +PNR    DRL   L  +A    
Sbjct: 572  LDKRRL--FTGTIRDLTENKQLAQRVAYLANHDSLTDLPNRTLLCDRLGQALA-AARGTG 628

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILI 622
                VM ID+  +  IND LG  VG+ VL    RR+ + +       ARL+G+ F +IL 
Sbjct: 629  QHVAVMTIDLAGFTMINDSLGHDVGNGVLRETARRLAQWVSLHNGTAARLAGDEFAVILP 688

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +   ++     + + +  P+ +   ++ +   IG + +        ++L+NAE+A++
Sbjct: 689  GLRDLAGVSAGTEQVLEMLNRPMTVGGSDLALPVDIGVSVFPRDGDEPLDLLRNAEMALH 748

Query: 683  HAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
              K R           +S   S+R+ ++  L  A++  +  L Y P +RL D  ++G EA
Sbjct: 749  QVKKREDQRLGFFDTAMSYAVSERLTLERSLKEALKAGQFELFYQPQVRLSDYALIGAEA 808

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+W HP+ G I+  +F+ +AEE  +I  +  ++LE+  R +  W+ Q     + + +NI
Sbjct: 809  LIRWRHPELGTIAPDKFIPVAEETGLIVPLGRWVLEQACRQLNLWQHQGL-TQVRMGVNI 867

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            + +   + +L E +  +I  +      + L  +ES++M + E +  +L RL  +G++L++
Sbjct: 868  SGRQFREVDLAETVAEVIRGSGIDARLLDLELTESMLMADGESTLRVLRRLADLGVTLSI 927

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  S L+YL   P  TVK + + +      E    I ++I+ +A ++    IA+ +
Sbjct: 928  DDFGTGYSSLAYLKRFPVHTVKIDRAFVRDLDHDEDGRTIAKAIVSLAHSLNLKTIAEGV 987

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              E     L   GCD IQ   +  P+      
Sbjct: 988  ETEAQASLLLHHGCDEIQGYLIGRPMPVADFA 1019



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 9/147 (6%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           L  + +   VI+H +        +    +     +  S D+    D     +T     A 
Sbjct: 119 LAGLDMLPRVIRHAIERQQSRTALELSHQTAQALLDASHDMAMLLDEDGHVITLNAQAAE 178

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G  S  + G   +    +  +  D  R      +   R       +    D    W  
Sbjct: 179 AFGRRSEELEG--MDVFTLMPPDLADRRRAFFAKALESGRT-----IQSEDNDG-PRWFT 230

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQK 523
            R   +  + G   R    + DI+ ++
Sbjct: 231 HRFLAV-GAEGAARRCAIFSRDISGER 256


>gi|121610171|ref|YP_997978.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Verminephrobacter eiseniae EF01-2]
 gi|121554811|gb|ABM58960.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Verminephrobacter eiseniae EF01-2]
          Length = 851

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 139/600 (23%), Positives = 265/600 (44%), Gaps = 17/600 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----D 422
           ++  L   L    + +   V+Q V      ++ +                 ++++    D
Sbjct: 252 MRTRLQRTLPRDGVRVVMGVVQDVTDEHRAAEQLREQLLFIQRIASRIPGFIYEFRLHSD 311

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                   +  +   +G+    +       +  +   DR   R    + V  +    Q E
Sbjct: 312 GATSVQYISDAVREFMGVEPREVTADHGVLMLRVLAQDRPQVRRSAITSVR-KLVPWQCE 370

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           +RV  +D    W +    P    +G ++ + G   DIT++K + + I   AF D LTG+P
Sbjct: 371 YRVCMSDGSVRWHMTNAIPHREPDGSVVSH-GFTMDITDRKLAEQEIERLAFYDALTGLP 429

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR+  LDRL   +        L   ++ ID+D +K +ND LG  +GD +L  +  R+   
Sbjct: 430 NRRLLLDRLQRSIATCQRTHKL-GALLFIDLDNFKDLNDTLGHDMGDQLLAQVATRLVAS 488

Query: 603 LKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++  D +AR  G+ F ++L +      + + +    A  +  S+  P  L   +   T S
Sbjct: 489 VRAADTVARFGGDEFVVMLEALAPDLRSATAQAEMVADKLLASLNQPFALDGGQHYSTLS 548

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG   +   +++  E+LK A+LA+Y AK  G N    F      +      ++ DL   +
Sbjct: 549 IGVTLFGEQRLSVDELLKRADLALYQAKAAGRNTQRFFDPDMQAAVNARSNLEADLRQGL 608

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
             +EL + Y P++      ++G EAL++W HP+ G I  ++F+ +AE+  +I  +  ++L
Sbjct: 609 ARAELLVYYQPVVDHQA-RLMGAEALVRWRHPQRGMIGPADFIPLAEQTGLILPLGQYVL 667

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +     +  W    +   + I +N++++          +   +      P R+KL  +ES
Sbjct: 668 QTACAQLQRWSRHPDTAGLSISVNVSARQFRQPGFVAQVLHQLKSHGADPRRLKLELTES 727

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STE 893
           +++G+ E +   + +L+  G+   LDDFGT  S LSYL  +P D +K + S +    +  
Sbjct: 728 LLLGDIEDTIARMAQLKSEGVGFALDDFGTGYSSLSYLKRLPLDQIKIDQSFVREVLADP 787

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+R+I+ +AK+++  ++A+ +     +  L   GC+  Q      P     I   L
Sbjct: 788 NDAAIVRTILALAKSLDLQVVAEGVETTGQLSFLQLHGCEGFQGYLFGRPGPVADIDAFL 847



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 13/193 (6%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
           P  +L+        +A    +    ++ A     +   +      ++ V         +F
Sbjct: 107 PGRLLLAWDLTARRVARDGIMVT--VRDASEAETLRTALAASERSLEEVRRDLREQTEVF 164

Query: 402 SDGERQSLAVLGSGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
              E  + A        W    D     +  +P +  I G        P R  +  I   
Sbjct: 165 DTMESLARA------GHWRRIEDPGETVLLWSPGLCAIAGFEQQEWVDPERA-VSGILPE 217

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR  FR + +      RG L  E+R R  D Q  WM  R++     +G +   +G+  D+
Sbjct: 218 DRHVFRQLRERDGRGERG-LDAEYRWRRPDGQVRWMRTRLQRTLPRDG-VRVVMGVVQDV 275

Query: 520 TEQKKSLEGILCN 532
           T++ ++ E +   
Sbjct: 276 TDEHRAAEQLREQ 288


>gi|34498715|ref|NP_902930.1| hypothetical protein CV_3260 [Chromobacterium violaceum ATCC 12472]
 gi|34104566|gb|AAQ60924.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 825

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 243/583 (41%), Gaps = 23/583 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             I  VL      +       + +     + + +   D  R  V+  P      G +   
Sbjct: 238 RRIVGVLQDITGQRRTEERLRQAATVFDSTAEGIAILDARRKVVSVNPAFTQQTGYSPEE 297

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVG-------YRRGRLQYEFRVRAADNQFHWMII 497
                          D D      ++F+          R   Q        + +   +  
Sbjct: 298 AMAWP----------DIDPLYQTPNNFIQPSSPASPEERKLWQGNVNYLHKNGKVLNIWE 347

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I  +   +G +  Y+ + +DI+    + E +   A  D LT + NR+   DR+   L  
Sbjct: 348 SISIVPGPDGGVANYVLVFSDISSVLAAQEQLDYLAKHDPLTNLCNRRMLQDRMEYELAQ 407

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     +   V++ID+D +K IND LG   GD +L ++  R+   ++  D +ARL G+ F
Sbjct: 408 AMRRQKM-MAVLLIDLDHFKTINDSLGHGHGDQLLATIATRLQGSVRASDTVARLGGDEF 466

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L    +   +      + + +A P+ L +    VT SIG +   +  +   E+L+NA
Sbjct: 467 CIVLGDIESPGDVDLMGQKLLQRLAEPVRLEQMVCYVTGSIGISMAPTDGMGVDELLRNA 526

Query: 678 ELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AKH G N    F  +       R+ I   L LA+E  +  L + PI+ L    I
Sbjct: 527 DQAMYGAKHAGRNRYCFFAPAMQKAAEVRLQISSGLHLALEQGQFRLEFQPIVDLSCGRI 586

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              EAL++W HP+ G I+ + F+ IAEE  +I  I  ++ ++    I +WRD      + 
Sbjct: 587 RKAEALLRWHHPQHGVINPAVFIPIAEECGLIAKICEWVYDQALDFIRAWRDMLRD-DLR 645

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN+++    D          +++       + L  +ES+++    + +  L   R  G
Sbjct: 646 IAINVSALHFRDLRNPVRWLDKLTRAGVPGEALMLEITESLLLDADHKVQEALDLYRAAG 705

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           I + LDDFGT  S LSYL     D +K + + +       +  A+  +I+ MA  +   +
Sbjct: 706 IQIALDDFGTGYSALSYLKRYRLDYLKIDQAFVGQIAEEPRDHALCEAIVVMAHKLGLNV 765

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           IA+ +        L    C++ Q    + PL     ++LL+  
Sbjct: 766 IAEGVETPAQAAILQACRCEHAQGFLYSRPLPAERFVELLRSH 808



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 14/160 (8%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-- 442
             +Q  +      +       R   A+  +   VW+W +  D++     + ++ G     
Sbjct: 114 ATLQMAMVRFGIQRRADEQLGRMGKAMQAAELDVWEWRVETDQM----QMFSLTGSEPLA 169

Query: 443 GSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRI 499
             + G   IR+++  +   D       +     + +  L  +FR R  A+    W+  R 
Sbjct: 170 SGLAGNESIRHFIEQVDARDAAAVSDAISLARDHGQA-LDIQFRARTGAEQDERWLRARA 228

Query: 500 RPMSNSNGDI-LRYIGIANDITEQKKSLEGILCNAF-QDN 537
           R     +G+   R +G+  DIT Q+++ E +   A   D+
Sbjct: 229 RCF--DDGEPGRRIVGVLQDITGQRRTEERLRQAATVFDS 266


>gi|291483871|dbj|BAI84946.1| hypothetical protein BSNT_02256 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 749

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 151/765 (19%), Positives = 295/765 (38%), Gaps = 61/765 (7%)

Query: 234 IDFGFLSKLV------NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           + FG  S         ++       +        +S    F+ +Y   +R       +  
Sbjct: 1   MGFGIWSMHFVGMMAVHMEMPMTYEFMPLMAAIGASVSGSFVSLYF-VSRNILTYYRLLT 59

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY-----------HGMKGYER 336
             +   A +  M +      + +  I    +        I              +K +  
Sbjct: 60  GSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIFFDLAVKKHSE 119

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALVGGLVLIVILIGFTVI 387
            ++       I +      M  T  L                       + V LI F + 
Sbjct: 120 HLIFYKVVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHWSIFVTLIIFCIQ 179

Query: 388 QHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-- 437
             +L + +  +      ER        QSL V    D ++   +  D +++      +  
Sbjct: 180 TLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLEGDIISSNHAGEEMIS 238

Query: 438 -LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G +                       + + +     ++  +  +  +     Q   + 
Sbjct: 239 KFGFSMHDWRNYTSL-----------KVKRLFEQVKKDKQA-MNSDSDLITEKGQ-FHLN 285

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           I + P+   N ++     I  D+T+Q K+ + I   A  D+LT +PNR+  +  LT +L+
Sbjct: 286 ITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTKVLN 344

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +    V  +D++++K IND LG  VGD +L    +R+  ++     +ARL G+ 
Sbjct: 345 R-EHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARLGGDE 403

Query: 617 FGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           F IIL      + +    A  + +    P  + +  +  + SIG A          E++K
Sbjct: 404 FIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTDGLELMK 463

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733
            A++AMY AK R  +    +  S    + V + ++  L  A+EN    L Y P   +  +
Sbjct: 464 KADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQ 523

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           ++ G EALI+   P        EF+ +AEE  +I  I  ++++   +    W ++     
Sbjct: 524 KMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHNKGYD-- 581

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + INI+++     +L   ++  ++K    P  +++  +ES+ M N + S+ +L  L++
Sbjct: 582 LSVAINISARQFQSEDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLDHSKKVLSSLKE 641

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +GI +++DDFGT  S LSYL   P   +K + S +       K   I  +II M   +  
Sbjct: 642 LGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSL 701

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +IA+ +      + L   GCD++Q    + P+      + + E+
Sbjct: 702 QVIAEGVENAAQKQLLYEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 746


>gi|323697815|ref|ZP_08109727.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. ND132]
 gi|323457747|gb|EGB13612.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans ND132]
          Length = 712

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/573 (24%), Positives = 260/573 (45%), Gaps = 12/573 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHG 447
           V       + +    +R  +    + D  W+            +P    I G +      
Sbjct: 143 VAELEASREALARSEQRYRMVADYNYD--WESWIGPNGSLRYISPSCERISGYSPQRFLD 200

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   +H  D + +   +             +FR+   + +  W+ +    +S+  G
Sbjct: 201 EPDLMQRIVHREDLNKWVQFMQD--DTVGDEESLDFRIGDINAKTKWLSLVRHSISSDKG 258

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           + L       DIT +K     +  + F D LTG+PNR  FL+RL    +  A        
Sbjct: 259 EPLGLRLSMRDITNRKLVESKLQHSNFHDPLTGLPNRTLFLERLNRAAERCARSGEF-FA 317

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ I++D+++ +ND  G +VGD ++V +  ++ + ++  D +AR   + FG+++      
Sbjct: 318 VLFINMDRFQAVNDHYGHSVGDKLMVRIGVKLQQTVRPIDTVARFGSDEFGVLIEDMPRR 377

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      +  S   P+ +     T++ASIG+     +++ + E+L NA++AM  AK  
Sbjct: 378 SDVRPLIRLIFDSFREPVEVDGITFTLSASIGYDVGAGTEVDTEEVLHNAQVAMNEAKEE 437

Query: 688 GGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N V ++           + ++ +L  A+   E    Y PI+ L D  + G EAL +W+
Sbjct: 438 GKNRVTAYDKRMREGMINVLAVESELNRALVAGEFTAHYQPIVNLADGSLYGFEALARWN 497

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKD 804
           HP+ G +S  EF+ +AEE   I  +   +LE     +  W  +      + I +NI++K 
Sbjct: 498 HPERGLVSPGEFIPVAEETGQIVTLGSQILEEACTAMQEWTRRYPAAENLTIAVNISAKQ 557

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             ++ L   ++ ++ +T   P R+KL  +E+VVM +  +S   L  L+ +GI L++DDFG
Sbjct: 558 FAESSLAANVERVLKRTGLRPGRLKLEITETVVMLDAIKSVNQLKTLKNLGILLSIDDFG 617

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S +SYL   P D +K + S +     + + I I+R+I+ MA ++   ++A+ I  E 
Sbjct: 618 TGYSSMSYLQRFPTDQLKIDLSFVQRMESSPENIEIIRAIVNMAHSLRLRVVAEGIETER 677

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               L  + CDY Q    + PL        +K+
Sbjct: 678 QRDLLYSLQCDYGQGYLYSRPLPREQAEDFVKD 710


>gi|95931335|ref|ZP_01314049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132606|gb|EAT14291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 635

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/586 (23%), Positives = 263/586 (44%), Gaps = 12/586 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            +   + +  +     +   + G  V                  E        + D++  
Sbjct: 37  YIGAPVWRVQVYYFPAVYGSIAGGLVGIWSRRLRQALVKQVKLQEHYLDLFENASDLIQS 96

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRL 479
             +    +         LG     +  P  N    I   DR   R  + S +     G +
Sbjct: 97  VRLDGSILYVNRAWKETLGYLDHDI--PSLNIFDVISSADRPICRNRVISLLDGAELGPI 154

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           +  F  +  D +   +   I  +    G      GI  +I+E+K++ + I   A+ D LT
Sbjct: 155 EVTF--QCKDGRAVLLEGNIS-LRQDEGQPHSVRGIFRNISERKQAEQKIHQLAYYDTLT 211

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    DRL   +  +    +    VM ID+D++KK+ND LG +VGD +L    RR+
Sbjct: 212 GLPNRVLLQDRLIHAIADARRFSHY-LAVMFIDLDQFKKVNDTLGHSVGDLLLKDAARRL 270

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+  D  ARL G+ F +IL        +   A  +   ++ P  L ERE+ V+AS+G
Sbjct: 271 RSCLRDNDTAARLGGDEFVVILSGFKQISNLPHIARKVLDVLSQPYFLAERELVVSASLG 330

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVEN 717
            + +      +  +++NA++AMY AK+  GN    F   ++   + ++ ++E L  A+ +
Sbjct: 331 ISVYPQDGDNAELLMRNADMAMYAAKYDHGNGYCFFSEEMNKNATRQLELEEQLRHALID 390

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            +  + + P      +++ G+EAL++W+  +   +    F+ + E    I A+  ++L +
Sbjct: 391 QQFEVYFQPQFDWSRQKLTGVEALVRWNRAQGEVVPPEMFIPVVESTGQIVALGEWVLRQ 450

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                I         P+ + +N++ +   D  L   ++ ++ +T + P +++L  +E+++
Sbjct: 451 A-CLQIQQLQCQLNVPLQLSVNLSGRQFDDLSLIYKVKKILQETNFPPEQLELEITETIL 509

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895
           M N + +R  LG+L + GI L +DDFGT  S L+YL   P D +K + S +      +  
Sbjct: 510 MENADSARKTLGQLSQQGIRLAIDDFGTGYSSLNYLNTFPVDRLKIDKSFLVNVMHDDNH 569

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            AI+ +II MA  +  ++IA+ +     +  L+ +GC  +Q    +
Sbjct: 570 AAIVATIISMADTLGLSVIAEGVETMEQVSFLSDLGCQAMQGFIFS 615


>gi|307721927|ref|YP_003893067.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306980020|gb|ADN10055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 947

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/556 (25%), Positives = 266/556 (47%), Gaps = 13/556 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               + +     + +++   D+    V+       I G     + G     L ++H   +
Sbjct: 395 KKLAQAATVFENTEEVIIIADVEGKVVSVNTAFTNIYGYTLEEIKGKN---LSFLHSGVQ 451

Query: 462 DN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +   ++   +  + Y  G  + +F  +    +   +   I+ +++S GD++ YI +  D+
Sbjct: 452 EKSFYKDTWNQLIEY--GIWKGKFVNKTKSGEIIPVWTTIKKITDSKGDVVNYIIVQTDL 509

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            E + S       A+ D LTG+ NR +F + L   L ++  + +L   ++ ID+D++K I
Sbjct: 510 RELETSQAKADYLAYHDPLTGLYNRVNFEEYLKHALVVAHRNTSL-LAILFIDLDRFKVI 568

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +GD+VL ++  R+   L+  D ++R  G+ F +IL +  ++   A  A  + +
Sbjct: 569 NDTLGHDIGDEVLKAVASRLKTTLRESDFISRWGGDEFVVILENLASASDAAIIASNIIE 628

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  PIN+ +  +  TASIG A +  +   S  ++K+A+ AMY  K  G N+   +    
Sbjct: 629 NLEEPINVAQHSLITTASIGIALYPENGEDSHTLIKHADSAMYLTKETGKNNFRYYTKEL 688

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R+ I   L  A++N+ELY+V+ P  +L  + I   EALI+W +P  GN+   EF
Sbjct: 689 SEGIQHRLDIDMALRSALQNNELYMVFQPQYKLSTKTIHSAEALIRWQNPTLGNVPPDEF 748

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE   I  +  F+ E   +     +   +    +I IN++S    +  L E   A+
Sbjct: 749 IPVAEENGTIIQLGYFVFEESCKAFKKMKHANSQIK-YIAINVSSLQFKEAHLLETFLAI 807

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++    P  I++  +E  +M +   +  +L   R  G  +++DDFGT  S +SYL  +P
Sbjct: 808 ATRHNVKPHEIEIEITERFIMEHTIANMNILQNFRNHGFKISIDDFGTGYSSMSYLKQLP 867

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +           I+ +II ++K +   I+A+ I  +     L++  CD  
Sbjct: 868 TDTIKIDKSFVDDIAHGSSDNVIIEAIIALSKTLGYVIVAEGIETQDQENFLSKANCDLG 927

Query: 936 QDSHVASPLGFNSILK 951
           Q    + P+    I++
Sbjct: 928 QGYLFSRPVTCKEIIE 943



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 8/167 (4%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           Q  LVG   L  + I F +I   L +    + + +       A+  S +IV   D  +  
Sbjct: 244 QTWLVGTFFLFTVFILFALILSHLESNKTKKELLA----FKYAIEHSDNIVVMTDAEKKI 299

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           V          G  +  + G     L      D +N    L++ +  +  + + +F  + 
Sbjct: 300 VYVNETFEKATGYKAQEVLGQNPRILKS-KPQD-ENIYKELNTKLA-KGEKWEGQFINKR 356

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            D    +    I P+    G ++ YI +  DITE  +  + +   A 
Sbjct: 357 KDGTLLYEKASIVPIF-LQGKLVNYIALKLDITEYIEQNKKLAQAAT 402


>gi|228915118|ref|ZP_04078715.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228844547|gb|EEM89601.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 785

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 155/754 (20%), Positives = 305/754 (40%), Gaps = 20/754 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 94  YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 152

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 153 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 212

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  + ++ ER         D +   D     +      + +LG  S 
Sbjct: 213 QKVSQRTADLITKSNDLVNNQERFKSLYEYHPDPILTIDSNGTVLNINQSGSILLGKDSA 272

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+      L   +G R      + RV+  + +  +         
Sbjct: 273 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 328

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT  K+  + I   AF D +T I NR  F   L   ++ +     
Sbjct: 329 MIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG 388

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ +
Sbjct: 389 -EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSISLARIGGDEFAVLVHN 447

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                ++ +    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 448 HT-EQQLMNLCETLFRITEEPFVVNQHSFYLSLSIGIAMYPFGGINTTTLLQHADIAMYS 506

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++ L  A+EN+EL+L+Y P +    E+++G EAL
Sbjct: 507 AKEKGNNAVCMYDETLSQKITRRLQLEQGLPNAIENNELFLLYQPQVDSKAEKVIGAEAL 566

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L++    +  W        + + IN++
Sbjct: 567 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQQACLQLKEWHSA-GYTNLKMGINLS 625

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 626 AIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSID 685

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +   G +     I+++II +A  +   +IA+ + 
Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGISNDGDEIIQTIISLAHTLNMKVIAEGVE 745

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 746 TKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 779


>gi|304312815|ref|YP_003812413.1| Response regulator receiver [gamma proteobacterium HdN1]
 gi|301798548|emb|CBL46778.1| Response regulator receiver [gamma proteobacterium HdN1]
          Length = 726

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/606 (22%), Positives = 261/606 (43%), Gaps = 25/606 (4%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           +DI+   +    V+  +       +      +  + +      Q    + S DIV+  D 
Sbjct: 113 SDILVKPVQQESVINTMRNALMRRKLANDNAHLHEQLAQAERMQKFFSINSPDIVYVLDS 172

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYE 482
                    +  T+L      + G   + L     +D+      I +   G  R     E
Sbjct: 173 NGRITYINDNATTLLNQDRQQLIGQHFSTLTG---DDQARQLPYIFNERRGGDRKTCNRE 229

Query: 483 FRVRAA----DNQ---FHWMIIRIRPMSNS-----NGDILRYIGIANDITEQKKSLEGIL 530
            +++      +          I    + +          +   G+A DI+ +K++   I 
Sbjct: 230 MQLKKRLDPANGGKTLSIPFEISASGIYDQVPGTGKTRFIGTFGVARDISTRKQAESMIR 289

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
              + D LTG+PNR  F DR  + +  +          + +D+D++K IND  G   GD 
Sbjct: 290 FQVYHDQLTGLPNRTLFRDRCQSAISQARRQQKKVVA-ITLDLDRFKAINDAFGHTAGDQ 348

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L +++RR+   L+  D LAR  G+ F I+L       +    A  +R+++     +  +
Sbjct: 349 LLQNVSRRLQGCLRESDTLARFGGDEFVILLPQTQTVEESNVVAEKIRQALLTDFAVNHQ 408

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--K 708
            +++TASIG A +     +   +L+NA++AM HAK  G N  + F      S    +  +
Sbjct: 409 AVSLTASIGVALFPDHGDSVDTLLRNADIAMNHAKTLGKNRFQYFEHQIQDSLSRRLNLE 468

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            D+   +  S+  L Y P I     ++V LEAL++W+HP+ G +   +F+ IAEE   I 
Sbjct: 469 FDMRAGIAESQFCLDYQPQIDAESGQMVSLEALLRWEHPRLGRLKPGDFLKIAEETGQII 528

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A+  ++  ++  D+  W+     P I + +N +   +   +    +   + +   S  +I
Sbjct: 529 ALGEWVFAQVCADLARWK----NPAIRVSVNFSPSHVEHPQFVPMIVETLRQHQISGQQI 584

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E++++         L  L + GI + +DDFGT  S LSYL   P  T+K + S +
Sbjct: 585 ELEITETLLLRQQPEINEKLLMLSQQGIHIAIDDFGTGYSSLSYLHRFPVHTLKMDRSFI 644

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +     I+++++ MA+ +   ++A+ +  E   + L   GC  +Q    +  +  
Sbjct: 645 ERVDAQGRETCIVKALVSMAEGLNLRLVAEGVETEQQYRHLRNAGCTMMQGFLFSEAVSG 704

Query: 947 NSILKL 952
           + + KL
Sbjct: 705 DVLEKL 710


>gi|329851357|ref|ZP_08266114.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840203|gb|EGF89775.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 717

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 129/523 (24%), Positives = 240/523 (45%), Gaps = 12/523 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V       ++LG+ + +  G   +            + +     +      L  E R+ 
Sbjct: 190 VVLLNHAGESLLGVTAQNTIGKTSH--DLFAPERAALYDSYDRQALQSDGPVLLEEERIV 247

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
               Q   + ++   +   NG+    + +  D+TEQK++   I   A  D LTG+ NR  
Sbjct: 248 DGRGQERIIQLKKTVLRKPNGEADSILTLGMDLTEQKQAEAQIARLAHYDPLTGLANRTL 307

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   +   L  +A   + +  +  +D+D++K IND  G   GD++L+ + RR+ + ++  
Sbjct: 308 FTQDMEKALARAARRRHGQTALHCLDLDRFKAINDSYGHLAGDELLIEVGRRLRKCVRRG 367

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++AR+ G+ F  I+     +      A  + +++ +P  L   ++ V  SIG A     
Sbjct: 368 DVVARMGGDEFA-IIQEIERAGDAQGLASRVVEAMQVPFTLTNAQVEVGVSIGIALSPDD 426

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724
                 ++  A++A+Y  K  G N+   +         +   ++ DL  A+E  E  L +
Sbjct: 427 AQDMHNLMSRADMALYRVKSEGRNNWCFYSAEMDEKLLLRMELEHDLKQAIERDEFELHF 486

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++ L   EIV  EAL++W HPK G +S ++F+ +AEE  +I  I  ++L    R   +
Sbjct: 487 QPLLNLKTGEIVSFEALLRWRHPKRGLVSPADFIPVAEESGLIGPIGEWVLRTACRSAAA 546

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W       P  I +NI+        L + ++  + ++  +P R++L  +E+V++ +   +
Sbjct: 547 WPQ-----PWRIAVNISPVQFRYKSLTQLVKTTLKESGLAPRRLELEITETVILNHETHN 601

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSI 902
             +L  +R +G+ + +DDFGT  S LSYL   PFD +K + S +      R A  I+R+I
Sbjct: 602 ISILNAIRGLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDQSFIRDLPHDRNALSIVRAI 661

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             MA+ +   I A+ +  E  +  L  + C   Q   +  P  
Sbjct: 662 TDMAQTLGVHITAEGVETEAQLHALEALNCHEAQGYLIGRPAP 704


>gi|56130758|ref|YP_145661.1| hypothetical protein pMOL30_130 [Ralstonia metallidurans CH34]
 gi|94152542|ref|YP_581949.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans
           CH34]
 gi|56068748|emb|CAI11310.1| hypothetical protein [Cupriavidus metallidurans CH34]
 gi|93358912|gb|ABF12999.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with
           PAS/PAC sensor(s) [Cupriavidus metallidurans CH34]
          Length = 705

 Score =  506 bits (1302), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/575 (22%), Positives = 256/575 (44%), Gaps = 14/575 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +          + ++ E + +    +  + D V   D                G     +
Sbjct: 125 NRREREALVSQLRTELENRKISANVLESTSDAVLVTDARLRIQYINRAFTAATGYPGADI 184

Query: 446 HGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G    +L    H   R  +  I  +      GR + E  +  AD       + I+ + +
Sbjct: 185 VGRPAGFLRSGRH--GRGFYAEIFATLRDG--GRWEGEVWLLRADGSIAPDWVTIKTVHD 240

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G++  ++ +  DI +++      +  A+ D+LTG+PNR+ F DRL   ++ SA +   
Sbjct: 241 EHGEVFSFVAMFADIMQRESLRAQYMHLAYYDSLTGLPNRRLFQDRLGHAIERSA-NKGT 299

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +++ +D++++K +ND LG + GD +L  +  R   L+K  D + R+ G+ F  IL   
Sbjct: 300 EFSLLFLDLNRFKDVNDTLGHSFGDRLLEVVGERFKRLVKEADFVGRIGGDEFTFILHDT 359

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  ++   A  +   +A PI L   +  V+ASIG + + +   T+  ++ NA+ AMY A
Sbjct: 360 ADPAQVESIARRIFDELAKPIVLNGTQSYVSASIGVSRFPADGTTAEALIMNADAAMYRA 419

Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F     +    R+ I   L  A+E +E  L + P + L   +++G E L+
Sbjct: 420 KEDGIGACHFFSRGLHTKVLKRLDISNALHRALEANEFSLAWQPQVSLTTGKVIGAEVLL 479

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W       +S +EF+ +AEE  +I AI  ++L    R +      A  P   + +N + 
Sbjct: 480 RWMRDGSVPVSPAEFIPVAEETGVIGAIGDWVLRESCRYVAKLEALAIDPEFRVAVNFSP 539

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L  +   E +   I++      R K+  +E+ +  + E     +  L   G+ + +DD
Sbjct: 540 LQLSWHR-QEPVLQTIAQFGVDCRRFKIELTENALFVHEEGLLEFVRELGAAGVGIAIDD 598

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS L ++P   +K + + +     +     I++++I MA  +   ++A+ +  
Sbjct: 599 FGTGYSNLSSLKHLPVTELKIDRAFIHDMQGSHSDRQIVQAMISMAHMLGLRVVAEGVEY 658

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +  L   GC+  Q    + P+ F++++KLL  
Sbjct: 659 VWQVSVLREFGCEVGQGYLFSRPIDFDALVKLLDA 693


>gi|255022007|ref|ZP_05294013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968493|gb|EET26049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidithiobacillus caldus ATCC 51756]
          Length = 709

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/579 (23%), Positives = 258/579 (44%), Gaps = 12/579 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IR 450
                 Q ++   ER  + +   GD V   D              +LG A   + G  + 
Sbjct: 120 ERQRTEQTLWEQKERAEVTLHSIGDAVITTDTQGRVTDMNVVAEALLGYARSEVLGTALE 179

Query: 451 NWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           +    +           +   +   +   L     +   D +   +     P+ +  G +
Sbjct: 180 DVFHIVQEGTHTPVANPVRRVLEEGKVVGLANHTVLITKDGEERAIEDSAAPIRDRRGAL 239

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L  + + +D+TE+++    +   A  D LTG+PNR  FLDRL      +   +  +  V 
Sbjct: 240 LGVVLVFHDVTEKRRLTAELAHQATHDALTGLPNRTLFLDRLAHDRAQATRHER-QLAVG 298

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K +ND  G A GD +L  + +R+   ++  D LAR+ G+ FG++L       +
Sbjct: 299 ILDLDGFKLVNDRFGHAAGDALLQEMAQRLQTKMRSGDTLARMGGDEFGLLLTDITQIDE 358

Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +      M +++  P +L    E+ ++ASIG  S+     + +++L++A+LA+Y AK  G
Sbjct: 359 VEHACARMLEALRTPFHLPGGEEVPLSASIGLTSYPLDDSSPADLLRHADLALYAAKAAG 418

Query: 689 GNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +    F     +     ++    L  A++   L L Y P++ + +  I G+EAL++ DH
Sbjct: 419 RDCFRWFDWPMDKRQEEAMEVRKMLENALDRGHLLLHYQPVVEIDNGPI-GVEALLRLDH 477

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S + F    +   + + I  F+L        +W  Q    P+ + +NI +  LL
Sbjct: 478 PERGLLSPAAFASALDAPRLARRIGCFVLASAFAQAQTWHRQG--LPLRVSVNIGAHHLL 535

Query: 807 DNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           D      +QA +       PS +++  +E+  + +   ++  L    ++G+ + LDDFGT
Sbjct: 536 DQRFLADLQAALDAHPDLPPSSVEIEITETAPLLDFAVAQDTLAACNRLGVRIALDDFGT 595

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L+YL  +P  T+K + S +       K  AI+  ++  A+ +   +IA+ +     
Sbjct: 596 GNASLTYLQKLPAQTIKIDQSFVRDIINDPKDYAIVTGVVASARLLGLEVIAEGVETTEH 655

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
              L+ + C  +Q   +A P+   +I   +    PLV N
Sbjct: 656 AVLLSHLRCHCLQGYAIARPMAPEAIPDWIIRYNPLVNN 694


>gi|167032897|ref|YP_001668128.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859385|gb|ABY97792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 562

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 265/566 (46%), Gaps = 18/566 (3%)

Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
              AV  +   ++ + D+  +         +I G +   + G     L   +H  +   F
Sbjct: 5   YRAAVDAA--AIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLH--EPAFF 60

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQK 523
             +  +    R    + E   RA D   +W+   + P+ +   G + +Y+ I  D+TE++
Sbjct: 61  VGMWRALAAGR--VWKGEICNRAKDGSLYWVDSTMVPLIDPLTGQVRKYVSIRFDVTEKR 118

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +      D LTG+PNR    D L   L  S   +++   V ++D+D +K +ND  
Sbjct: 119 QLLHTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRR-EDIPLAVCMLDLDGFKAVNDGY 177

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +LV + +R+  +L+  D +ARLSG+ F +IL   ++  ++      + +++A 
Sbjct: 178 GHAVGDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEQQLHAALRRVLRALAA 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E  ++++ASIG   +      +  ++++A+ AMY AK RG N    F        
Sbjct: 238 PCVVREHRLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQEL 297

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                    +  A+ NSEL L Y P + L   +++G E L++W  P  G +   +F+   
Sbjct: 298 KATHQTVARVRRALHNSELCLYYQPKVNLRSGQVLGFEGLLRWQRPGRGVVPPGDFLPWV 357

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ +    + +W+ Q    P  + +NIA++ L  N+  E +Q L++  
Sbjct: 358 EQTDLIVEIGEWVVGQALSQLQAWQRQG--QPWSLSVNIAARHLQRNDFAERLQQLLAAY 415

Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+R+ L   ESV + N +     L   R +G+  +LDDFGT  S LSYL  +P  T
Sbjct: 416 PEVDPARLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQT 475

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      +  +A+  ++I +A+     +IA+ +      + L  +GC+  Q  
Sbjct: 476 IKIDQSFVRDILHDQDDLALTAAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGY 535

Query: 939 HVASPLGFNSILKLLKE-RFPLVKNT 963
            +A P+  + +    +  R P     
Sbjct: 536 CIARPMPVSEVQAWAQAYRQPEQWRA 561


>gi|253998083|ref|YP_003050146.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253984762|gb|ACT49619.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 828

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 153/612 (25%), Positives = 284/612 (46%), Gaps = 17/612 (2%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAV 411
            L   I                +V+   +IG     + + A  +    I       S+ V
Sbjct: 222 MLVEPIMNPDGELHWAETYKSPVVIDGQVIGTVGFARDITAERWLEAEIARRENEYSMLV 281

Query: 412 LGSGDIVWDWDIVRDRVTTTP--DIATILGLASGSMHGPIRNWL---PYIHINDRDNFRT 466
                 V  +D    RV       +   L    G + G           ++I   +  + 
Sbjct: 282 QNLPLTVVRYDRECRRVFVNSYCAMKESLKHNIGQVIGKTPMEFWSGSIVNITAEEYQQR 341

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQKKS 525
           I+          L+    +     +   +  +RI P  +++G ++  + +A+D+TE  + 
Sbjct: 342 IMAVMASGESDTLE----LITQYGEEQLVHLVRIVPERSASGAVMGAMTVASDVTENSRY 397

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I   A+ D LT +PNR  F  +L  +++ +  + +    ++ ID+D +K IND LG 
Sbjct: 398 RKRIEQLAYHDILTELPNRLLFNQQLQILIEQTPINKHG-FCLLFIDLDNFKTINDTLGH 456

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           +VGD +L+ ++RRI +LL   D+LAR+ G+ F I L    + L  A  A  +  ++ +P 
Sbjct: 457 SVGDKLLIEVSRRIRQLLGKDDMLARMGGDEFAISLPHCLSRLDAALLAARIIDALNVPF 516

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +   +  V+AS+G A +        ++LK+A+LAMYHAK +G N+ + +        ++
Sbjct: 517 EVSSIKFFVSASMGIAFYPEDSSHLDDLLKHADLAMYHAKRQGRNNFQFYNQELTVNAAE 576

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R++++  L  A+   EL L Y PI+ L   E+ G EAL++W+    G +   +F+ IAEE
Sbjct: 577 RLLMENLLRQALAKGELQLYYQPIMELATGELHGAEALLRWNSFDLGMVGPDKFIPIAEE 636

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  I  ++L    R  ++W       P  + IN++S+  +  +    +   + +T  
Sbjct: 637 RGMIVDIGAWVLREGCRTAVAWNA-LRSQPCVLAINLSSRQFMQQDFLSRITDCLQETGC 695

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  +K   +ES+++ + +  R  L  L  IGI++ +DDFGT  S L YL   P   VK 
Sbjct: 696 HPQWLKFEITESLLLHDSDHIRQTLEALHSIGITIAIDDFGTGYSALGYLNKFPVSQVKI 755

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++      +   ++++II MA ++   ++A+ +      K L+++GC Y+Q  +  
Sbjct: 756 DRSFISDIATNTESALLVKAIIAMADSLGKELVAEGVETAEQAKLLSQLGCQYVQGYYYG 815

Query: 942 SPLGFNSILKLL 953
            P+   +  + L
Sbjct: 816 RPVPLETFNQSL 827



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 3/179 (1%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                  +   +   D+I  + +      +I +     Q        +  I    + Q  
Sbjct: 94  GGCVAHFSHGNQEIFDLISFSPLSDEHGQMIGVLAIGRQTDQRDAAETLEIRRREQYQRA 153

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +     +VW  D     + T    A +L +A        +    Y      + +     
Sbjct: 154 VLNTFPFMVWLKDKQSRFLATNRAFADVLQIAHDE-DMRGKTDFDYFPHAMAEGYVADDQ 212

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             +     ++  E  +   D + HW      P+   +G ++  +G A DIT ++     
Sbjct: 213 EVLASGAAKMLVE-PIMNPDGELHWAETYKSPVV-IDGQVIGTVGFARDITAERWLEAE 269


>gi|289626963|ref|ZP_06459917.1| sensory box protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650793|ref|ZP_06482136.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 721

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 147 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 206

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 207 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 257

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 258 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 316

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + +    
Sbjct: 317 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 376

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 377 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 436

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 437 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 496

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           +HP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 497 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 556

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 557 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 616

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 617 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 676

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  L R+GC   Q    + PL       LL +R 
Sbjct: 677 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 713



 Score = 94.6 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R  LA+  +    WD DI  +R+  +   + + G+A+       R +   
Sbjct: 18  AERVLQQTRDRLELALELAQMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 77

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +R   R +  + +  R+  LQ  +R +  D     +  R R   N +G  ++  G 
Sbjct: 78  LPAEERRRMRAVYAAALENRQDCLQVTYRFQLQDGTSRLLESRARIYRNEHGQAVKLSGT 137

Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539
             DIT+Q      ++ E     AF    D++T
Sbjct: 138 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 169


>gi|15805493|ref|NP_294189.1| sensory box/GGDEF family protein [Deinococcus radiodurans R1]
 gi|6458153|gb|AAF10046.1|AE001906_2 sensory box/GGDEF family protein [Deinococcus radiodurans R1]
          Length = 805

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 144/534 (26%), Positives = 263/534 (49%), Gaps = 42/534 (7%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +  R + ++    +   +Q+E R+   D +  + +    P+ + NG++L Y+G   D+TE
Sbjct: 257 ERGRHMDEAARERKT--VQFEERMLRPDGEPVYQLRNYTPLFDENGELLLYLGHGVDVTE 314

Query: 522 QKKSLE-------------------------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            +++ E                          +  +A  D+LTG+PNR  F DRL+  + 
Sbjct: 315 LRRTQEALRELNAQLEERVEARTAELEALSRQLQHDALHDSLTGLPNRALFSDRLSQAIA 374

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            S      +  V+ +D+D++K IND LG   GD +LV + RR+   L+  D +ARL G+ 
Sbjct: 375 RSKLPGGPQYAVLFLDVDRFKGINDTLGHPTGDAMLVEMARRLRACLRATDTVARLGGDE 434

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLE----------REITVTASIGFASWTSS 666
           F I+L    ++ + A  A  ++ ++  P+ +             ++T++AS+G       
Sbjct: 435 FTILLEPLQSTEQAAQVAARIQDALRRPMQMPAAGPGGLPGGWHQVTMSASLGIVHSQPD 494

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
             ++  +L++A++AMY AK  G      F             ++ +L  A+   EL + Y
Sbjct: 495 YDSAMAVLRDADIAMYRAKDGGRAKYRVFTPEMREHILHVNRMEHELRRALAADELRVRY 554

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++ L    I G EAL++W HP+ G +   +F  IAEE  ++  I+ ++L R  R+++ 
Sbjct: 555 QPVLDLDRGRIEGFEALVRWQHPERGLLGPDDFTPIAEESGLLPDIDRWVLARACRELVQ 614

Query: 785 WRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+      PP+ + +N  S+ L   ++ E ++ L+ +T + P R+ L  +ES ++     
Sbjct: 615 WQRLYPHDPPLHLSVNFCSQHLAAPDVHERVKELLQRTGFDPGRLNLEITESSLLSQTGD 674

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
            +  + RLR++G+ L LDDFGT  S LSYL   P D +K + S + G    +    ++R+
Sbjct: 675 VQRNMERLRQLGVRLHLDDFGTGYSSLSYLQLYPIDVLKIDRSFVQGMLDNDSNAELVRT 734

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ MAKN+   ++A+ I     +  L  +GCD  Q    +  L  ++   L+ E
Sbjct: 735 IVAMAKNLNLKVVAEGIEDPRQLAALRGLGCDAGQGFLFSPALDVHAARTLVAE 788


>gi|77359897|ref|YP_339472.1| hypothetical protein PSHAa0951 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874808|emb|CAI86029.1| putative orphan protein; putative conserved domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1002

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 152/590 (25%), Positives = 272/590 (46%), Gaps = 18/590 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           + I    +   L      + I      R S AV  SG  V   D         P +  + 
Sbjct: 420 MTIEIRKLIDGLNQRIIEKEIAEKAARRLSKAVAFSGTGVVITDKNFVIEYVNPKMLEMT 479

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWM 495
             +    +      L  I          IL   +      R   + +  + + +    W+
Sbjct: 480 SFSEEHFNRAP--LLSIIASE-----MAILIDDIDVDLRSRNCWRGDTLIESNNKAPIWV 532

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + I P+   +G I  Y+  A DI+  K+S   +   A+ D LTG+ NR  F  +L   +
Sbjct: 533 SLSISPIREDDGTITSYVASAQDISFVKESQRKMEQLAYFDTLTGLANRTFFRMQLRKSM 592

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            L+    +    +   D+D++K+IND LG   GD +LV +  R+ + L+  D +ARL G+
Sbjct: 593 ALAER-GHYAFALFYFDLDEFKRINDTLGHNAGDQLLVEVANRLKQRLRAEDTIARLGGD 651

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L    +       A  ++K++  PI L   E+ ++ASIG            ++LK
Sbjct: 652 EFAILLSGIEHQEHATQVANTIQKTLNEPIQLGSNEVIISASIGITMAPYDSQEEDQLLK 711

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +A+LAMY AK +G N    +    ++  ++R+ I+ +L  A+++ +L + Y P I    +
Sbjct: 712 HADLAMYEAKAKGRNTFHFYSQELNTAANERLFIENELRQAIKDKQLTVYYQPQIDSRTQ 771

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG EAL++W HP  G I+ ++F+ IAE   +I  +  ++L +     +    Q     
Sbjct: 772 LVVGYEALLRWFHPTEGAIAPTKFIPIAEATGLIVELGEWVLHQACNFAVKLERQGRANN 831

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++++   D  L   ++ +I+ T  S   + L  +ES++MGN E +   L  L+ 
Sbjct: 832 --IAINLSARQFKDASLLPTLKKIIASTQVSAKSLHLELTESMLMGNVEAAIAQLHELKG 889

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G+S+++DDFGT  S LSYL   P D +K + S +         +AI  +II MA+ ++ 
Sbjct: 890 LGVSISIDDFGTGYSSLSYLKRFPVDILKIDRSFIKDIPDDNNDMAITAAIIAMAQKLKL 949

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            ++A+ +     ++ L    C  +Q  + + P+    +  L +    + K
Sbjct: 950 DVVAEGVETVEQVEFLKNNNCFIVQGYYFSPPIAERDLPMLFERLEQMAK 999


>gi|152992906|ref|YP_001358627.1| hypothetical protein SUN_1317 [Sulfurovum sp. NBC37-1]
 gi|151424767|dbj|BAF72270.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 866

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/594 (23%), Positives = 261/594 (43%), Gaps = 15/594 (2%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDR 427
           L   L+ I++    T+  + +      +      E+  LA      + + +   D     
Sbjct: 156 LTSLLINIILSRYKTLSSNTIDLLNEIKSRQDKEEKLKLAASVFSHAREGIIITDAENKI 215

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +       ++ G     + G     L     +    F   +   +  +      E   R 
Sbjct: 216 IEVNDTFISMTGYKREEVLGKNPKLLKSGKHD--SGFYAEIWRSISEK-DYWSGEIINRR 272

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            + + +  ++ I  + +  G    Y+ +  DIT +K+  + +   A  D LT +PNR   
Sbjct: 273 KNGEEYMEMLTISAILDDQGKPKNYVALFTDITTKKEHQKQLEHIAHYDVLTSLPNRVLL 332

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            DRL+  L  S  + NL   V  IDID +K+IND  G   GDD+L++L+ R+   L+  D
Sbjct: 333 ADRLSQALHSSRRN-NLVLGVAFIDIDGFKEINDTYGHNTGDDLLITLSSRMKGALRNND 391

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSS 666
            LAR+ G+ F ++                + +  + PI L  + ++V+ASIG +      
Sbjct: 392 TLARIGGDEFIVVFTDLKKPEDCHPMLERLLQVTSAPIILNNKSMSVSASIGLSIAAPDK 451

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVY 724
           +I + ++++ A+ AMY AK  G N    F +    +  +  +    +  A++N E  L Y
Sbjct: 452 EIDADQLIRQADQAMYQAKQSGKNRYSVFDIEKDSAVNIKRERLNQISKAMDNREFVLYY 511

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P + +   E++G+EALI+W+HP  G +   EF+ I E   +   +  +++E     I +
Sbjct: 512 QPKVNMTTGEVIGVEALIRWEHPDHGLLLPGEFLPIIENNMISIKLGDWVIETALSQIET 571

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPER 843
           W+ Q     I I +NI +  L   +    ++ L+S      PS ++L   E+ V+ +  +
Sbjct: 572 WQRQGLD--ISISVNINALQLQQIDFVSRLEELLSMHATVDPSLLELEVLETSVIDDITQ 629

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRS 901
              ++ R   +G+   LDDFGT  S L+YL  +P   +K +   +          AI+  
Sbjct: 630 VSNVMHRCIDLGVRFALDDFGTGYSSLTYLRRLPAHLIKIDQIFVRDMLIDPDDQAIIEG 689

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I ++K     +IA+ +      K L ++GC+  Q   +A  +  + I + +K 
Sbjct: 690 VIGLSKAFGRKVIAEGVETIEHAKALLQIGCELGQGYGIAKAMKASDIQEWIKS 743


>gi|119897962|ref|YP_933175.1| GGDEF/EAL/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119670375|emb|CAL94288.1| GGDEF/EAL/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 790

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/608 (22%), Positives = 266/608 (43%), Gaps = 22/608 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILI----GFTVIQHVLATGYFSQGIFSDG-ERQS 408
             +         +I      GL L+ +L+        ++         + +  +  ER  
Sbjct: 173 AALDRLGSTSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLE 232

Query: 409 LAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
                   +++ +    D   +    +  + T+ G+            L  IH +DR+  
Sbjct: 233 KIADNVPGVIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVV 292

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +       +     E+R+  A   + WM +   P    +G  L + G  +D++  K 
Sbjct: 293 AGAIRRSAETLQ-PWVCEYRIERAGGGYRWMSVFATPQRERDGATL-WHGHCHDVSSYKA 350

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + I   AF D LTG+PNR+  +DRL   L   A   +    ++ ID+D +K +ND  G
Sbjct: 351 AEDEIRHLAFYDPLTGLPNRRLLMDRLRHALATHARSRH-HGALLFIDLDNFKTLNDTQG 409

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRK 639
              GD +L  +  R+   ++  D +ARL G+ F ++L   +      + +       +  
Sbjct: 410 HQYGDMLLRQVAARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILA 469

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++     L  RE   T SIG   + ++    +E+LK A+LAMY AK  G N +  F    
Sbjct: 470 ALNDAYQLDGREAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVM 529

Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +      ++ +L  ++      L++ P +   D  + G EAL++W HP+ G +S + F
Sbjct: 530 QATVDAHSALESELRRSLRQGNFALLFQPQLD-RDGRMTGAEALVRWHHPEQGLVSPAAF 588

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  ++LE     +  W        + + +N++ ++      C+ ++ +
Sbjct: 589 IPLAERTGLILPLGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPGFCDQVERV 648

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T  +P R+KL  +ES+++ + E +   + RL+++G+  +LDDFGT  S L+YL  +P
Sbjct: 649 LQRTGVAPGRLKLELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLP 708

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    +      I R+II + +++   ++A+ +        L R GC   
Sbjct: 709 LDQLKIDRSFVRDVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSF 768

Query: 936 QDSHVASP 943
           Q      P
Sbjct: 769 QGYLFGRP 776


>gi|330869804|gb|EGH04513.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 722

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 269/577 (46%), Gaps = 26/577 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 148 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 207

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 208 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 258

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 259 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 317

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + +    
Sbjct: 318 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 377

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 378 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 437

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 438 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 497

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           +HP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 498 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 557

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 558 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 617

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 618 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 677

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  L R+GC   Q    + PL       LL +R 
Sbjct: 678 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 714



 Score = 94.6 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R  LA+  +    WD DI  +R+  +   + + G+A+       R +   
Sbjct: 19  AERVLQQTRDRLELALELAQMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 78

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +R   R +  + +  R+  LQ  +R +  D     +  R R   N +G  ++  G 
Sbjct: 79  LPAEERRRMRAVYAAALENRQDCLQVTYRFQLQDGTSRLLESRARIYRNEHGQAVKLSGT 138

Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539
             DIT+Q      ++ E     AF    D++T
Sbjct: 139 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 170


>gi|170749422|ref|YP_001755682.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655944|gb|ACB24999.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 777

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 163/730 (22%), Positives = 292/730 (40%), Gaps = 26/730 (3%)

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
           +    +     + A  E  +    ++ L     W      +   +      +       F
Sbjct: 51  VYLFWNPANRAYLAGLETLILPLAVVSLQQCWRWRSRPKPLQVPSSFVQGVVLAAQAYGF 110

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL--LIPAWILIFIWFIGLWMAIT 359
               +   +     A   L     I      G   AVL  +   +  + I    + +A T
Sbjct: 111 LLASIPVMLFSGADAHGRLLIASSIAGLIATGMSAAVLPRVAIGYSGLIILGSFIALATT 170

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSG 415
                  +   L    + I   I        +        +    E   L +      + 
Sbjct: 171 GEAFYIYVAVLLFFYAIFICFTILHLSRLLTMRVI-AQIELERQQEFTHLLLNEFEESAS 229

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVG 473
           D +W+ D        +P +  + G +   + G     L    +    R +  T L S + 
Sbjct: 230 DWLWETDADLRLQHVSPRLIEVAGSSERQLMGLPLERLLLPPVAPP-RSHSSTTLWSCIA 288

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            RR       ++     +     +  +P  +  G    Y G+ +D+TE+++S E +   A
Sbjct: 289 ERRAFRNLHLQL-DIAGERRTWCLSGKPTFDRAGAFSGYRGVGSDVTEKRRSEERLSYLA 347

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LT +PNR  F  +L             R  V+ +D+D++K +ND  G A GD +L 
Sbjct: 348 LHDSLTDLPNRVLFH-QLQEA-ARERLAQGDRFAVLALDLDEFKSVNDTFGHAAGDKLLK 405

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLERE 651
           S+  R+         LARL+G+ F ++       +   I   A  + +++A P  +    
Sbjct: 406 SVAERLRSFEASDVQLARLAGDEFAVLATGRSARDLHAIEALANGIVEALASPFTIDGIR 465

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKE 709
           +TV+ SIG A          E+++ A+LA+Y  K  G N    +          R  +  
Sbjct: 466 LTVSVSIGIAIAPQDG--CQEIMRRADLALYRMKSEGRNGYRFYEAEMDERIEARRALTA 523

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A++  E  L + PI+   +  + G EALI+W HP  G +S  EF+ +AEE  +I  
Sbjct: 524 DLRGALDRDEFVLYFQPIVAAKECRVRGFEALIRWKHPVRGFVSPGEFIPLAEETGVIIP 583

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L    R    W        + I +N++ +    ++L + +++ +  +  + +R++
Sbjct: 584 LGEWILREACRIAAGWP-----GDVRIAVNLSPRQFRHSDLTQLVRSALRTSGLAAARLE 638

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ESV +         L +LR++G+ L+LDDFGT  S LSYL  I FD +K + S + 
Sbjct: 639 LEVTESVFLEATPAINATLSKLREMGVRLSLDDFGTGYSSLSYLRRIAFDKIKIDQSFVR 698

Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              ++R   AI+ +II MA +++ TI A+ +  +     L   GC   Q    + PL   
Sbjct: 699 DLPQERGAAAIVSAIIDMATSLDMTITAEGVETDAQRACLLEQGCHEFQGYLFSKPLPAE 758

Query: 948 SILKLLKERF 957
               L + R 
Sbjct: 759 QAAALARSRQ 768


>gi|145299722|ref|YP_001142563.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852494|gb|ABO90815.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 832

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 149/590 (25%), Positives = 261/590 (44%), Gaps = 32/590 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +G  +    +      + + SD + R S     + + +   D     +      + I G 
Sbjct: 246 LGSVLTIFSVRMVAELERLQSDAQLRLSAVAFETHEGIIITDPDFKILRVNHAFSQITGF 305

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR------GRLQYEFRVRAADNQFHW 494
            S  + G        +H          L S +           R Q E +    D   + 
Sbjct: 306 DSQRVIG--------LH------LGNELWSGLDGLGYELNTLNRWQGETQRLHLDGHTYP 351

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
               + P+ +  G I  ++    DI+E+K +   I   A+ D LTG+PNR+   + L   
Sbjct: 352 QWEIVTPVQDDKGVISHFVICFEDISERKAAERRIQDLAYYDELTGLPNRRQLHETLAQA 411

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
              ++ D NL   ++ ID+D +K IND LG A GD +L  ++ R+  L++  D LARL G
Sbjct: 412 FSEASRD-NLIGALLFIDLDHFKTINDSLGHATGDWLLKEVSSRLKRLVRQGDCLARLGG 470

Query: 615 NRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           + F ++L S         ++    A  +   IA P N   + + + AS+G   +   +  
Sbjct: 471 DEFVLLLPSLSASPPQAEMQADLIAERLISEIAAPYNHGVQVLHIGASVGITLFPGREQG 530

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPI 727
             ++LK A+ AMY AK  G      F  S  +     +    +L  A+   EL L Y P 
Sbjct: 531 VDDLLKQADTAMYQAKSAGRKTRRFFDASMQQQADRRLLIHNELRNALSQQELTLYYQPQ 590

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             +   +I+G+EALI+W  P    +S +EF+ IAEE  +I  I  ++L       + W +
Sbjct: 591 HMVEGGDIIGVEALIRWQPPGRALVSPAEFIPIAEETDLIVDIGNWVLHEACAQYVLWEE 650

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P  + +N+++K     +  E +  +++ T   P+ + L  +ESVV+G+ E +   
Sbjct: 651 NGIHIP-QLSVNVSAKQFHATDFVECIHDVLAATGMDPACLNLEITESVVLGHAEDTISK 709

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           +  L+ IGIS  +DDFG   S LSYL  +P D +K + S +         +AI+ ++I M
Sbjct: 710 MSELKAIGISFAIDDFGAGYSSLSYLKRLPADELKIDRSFIQDIPKDGDNMAIVEAVIAM 769

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+++   + A+       ++ L   GC + Q    + PL    + + ++ 
Sbjct: 770 ARHMGFNVTAEGGESRQQLEFLQAQGCHFYQGYLASKPLPVPYLERYVRR 819


>gi|50086545|ref|YP_048055.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter sp.
           ADP1]
 gi|49532519|emb|CAG70233.1| conserved hypothetical protein; putative diguanylate
           cyclase/phosphodiesterase [Acinetobacter sp. ADP1]
          Length = 676

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 154/594 (25%), Positives = 270/594 (45%), Gaps = 17/594 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            + P       +  ILI    +   L+     + I  D E   LA+  +  IV   D   
Sbjct: 90  FVAPQYSIDQRIDGILISVFELTEQLSIHQQLEKILKDFENYKLAID-AHSIVAITDNRG 148

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                      I       + G     +    H   R  F+ +  +         + E  
Sbjct: 149 VITHVNEKFCDISQYEYYELVGTTHKIINSGFHP--RSFFKQMWKTIAQGNI--WKGEIC 204

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            R    + +W+   I P+ +++G +  YI I  DIT+ K S +     A  D LTG+PNR
Sbjct: 205 NRTKQGKLYWVDTTIVPLKDNDGLLKNYISIRTDITQLKSSEDHAKYMALYDELTGLPNR 264

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +   DRL  +++LS    +    ++++D+D +K +ND LG   GD++L  +  R+ + ++
Sbjct: 265 RYVKDRLKKVIELSKESQH-HSAILMMDLDNFKTVNDTLGHDYGDNLLKMVANRVKKCVR 323

Query: 605 FPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             + +ARL G+   IIL + +        +    A  +  SI  P NL  + I  + SIG
Sbjct: 324 ETETIARLGGDELLIILSNLSENEEIAQAQAQAIAERISNSIYQPFNLENQVIQTSVSIG 383

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN 717
              +  + I  +E+LK A++A+Y AK  G N + +F   +      R  +  DL  A+  
Sbjct: 384 IFVFNDASIPQNELLKYADMALYQAKANGKNCICTFDPLMEQNVISRASLLSDLRQALIR 443

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y PI+    ++I+G EAL++W HP  G I   EF+  AE+  +I  I   +L  
Sbjct: 444 DEFELYYQPIVD-QHKKIIGYEALLRWIHPVRGLILPGEFIEQAEKSDLIHLIGNRVLMM 502

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             + +  W    +     + +NI+ +    ++  E +  +I  +  +P R++L  +ES+ 
Sbjct: 503 ACQQLYQWSQNTDSAHWTLSVNISVQQFRKSDFEENIIQIIQDSKANPYRLRLELTESMF 562

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
             + + S   + +L +IG+  ++DDFGT  S L+YL  +P D +K + S +       + 
Sbjct: 563 YTDMQSSIEKMKKLIEIGVRFSMDDFGTGYSSLNYLKLLPLDQLKIDRSFVKNMVDNSRD 622

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           IAI+ +II +A  ++  ++A+ +  E     LT+  C   Q      PL  +SI
Sbjct: 623 IAIVNTIINLAHILDLNVVAEGVETEEQFICLTQNQCFTFQGYLFGRPLPIDSI 676


>gi|77919670|ref|YP_357485.1| signal transduction protein [Pelobacter carbinolicus DSM 2380]
 gi|77545753|gb|ABA89315.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 988

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/574 (24%), Positives = 262/574 (45%), Gaps = 17/574 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L     ++ +    + +SL +  S D++   D            +   G     + G 
Sbjct: 415 EILERNQAARALKESEQEKSLILNSSSDLIAYLDPGLRIRWANRTSSDRAGRQQTQIEGL 474

Query: 449 I--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W              I    +   +  L     V  +D Q    ++R  P  +S 
Sbjct: 475 PCYAAWHGLDSP-------CIGCPVLRSHKTGLPEHGEVVTSDGQI--WLVRAFPFHDSQ 525

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +  +   + D++EQKK+   I   A+ D+LT +PNR  F   L   L+ +    +   
Sbjct: 526 GRVSGFATFSLDVSEQKKAQRTIHRMAYYDHLTELPNRALFQKELDRRLEEAVGRGHG-L 584

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M +D+D +K +ND LG A GD +L  +  R+   L   D LARL+G+ F  +L   ++
Sbjct: 585 ALMFLDLDHFKGVNDSLGHAKGDLLLQKIAARLQGCLGREDFLARLNGDEFIFLLTEIDD 644

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            + +   A  +++ +A P NL   EI V  SIG A +    +    ++K A+ A+Y AK 
Sbjct: 645 PVAVKALAGNVQRIMASPFNLDGDEIYVGTSIGIACYPLHGVDVENLMKRADRALYAAKE 704

Query: 687 RGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG N +E F             ++  L  A+  +E +L Y P + L    ++G+EAL++W
Sbjct: 705 RGRNAIELFSEQINARFHRRQQLEMRLQNALAKNEFFLEYQPQVDLQTGRMLGVEALLRW 764

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            +   G +   +F+ +AEE  +I+ I  ++L    ++ +SW        + + +NI+ + 
Sbjct: 765 RNDDLGLVMPDDFISLAEETGLIRPIGEWVLRTACQEYLSWWQPEGAE-LRLAVNISGQQ 823

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +    +  ++  T + P  ++L  +E+V M + E +      L+   + L +DDFG
Sbjct: 824 IKHPDFVPIIDDILHSTGFDPRLLELEITETVAMEDVEGNIGTFRDLKARRLQLAIDDFG 883

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL + P D +K +   +  + +     +++ +I+ MA+++   IIA+ +  E 
Sbjct: 884 TGYSSLSYLRHFPIDRLKIDRKFIRDAAKCSDSASLVEAIMSMARSLHLDIIAEGVETEE 943

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  L + GC  IQ      P+  + + K L+E+
Sbjct: 944 QVAYLWKQGCRQIQGFFFGRPMSASDLQKYLQEQ 977


>gi|89093798|ref|ZP_01166744.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081928|gb|EAR61154.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 970

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/560 (26%), Positives = 255/560 (45%), Gaps = 13/560 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           + +     + + +   D            + I G +   + G         H +D   F 
Sbjct: 296 QAASVFEHANEGIMITDPEGTIQNANLAFSRITGYSRNEVIGQNPRIFSSGHHDD-QYFA 354

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +  S     +G    E   R  D +    I  +  + + NG++LRY+ + +DIT  KK 
Sbjct: 355 EMWKSLSE--KGNWTNEIWNRRKDGEIFAAIQTVSAIKDENGELLRYVSLFSDITALKKQ 412

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LTG+PNR    DRL   +  +     L   V   D+D +K++ND  G 
Sbjct: 413 QQQLEKIAHYDALTGLPNRVLLSDRLQQAILQAKRHKRL-LAVAFFDLDGFKEVNDTHGH 471

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           ++GD +L+ L  R  + L+  D LARL G+ F ++L   ++S +       + K+I+ PI
Sbjct: 472 SIGDKLLIELAERSKQALREGDSLARLGGDEFVVVLQDLHSSEESLPVLERLLKAISKPI 531

Query: 646 NLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            +   EI V+ASIG   +    +I + ++++ A+ AMY AK  G N    F     RS R
Sbjct: 532 FMNHTEICVSASIGITFYPQADEIDADQLIRQADQAMYVAKQSGKNRYHIFDTEHDRSVR 591

Query: 705 VMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML-IA 761
               + L    A+ N E  L Y P + +   ++VG EALI+W+HP+ G +   +F+  IA
Sbjct: 592 GHHDQVLRIHSALNNREFELYYQPKVNMRTGQVVGAEALIRWNHPENGLVMPGDFLPVIA 651

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            +  ++  +  ++LE+    I  W  Q    P  + +N+ +  L   +  + +Q +++  
Sbjct: 652 GDAGLVVEVGDWVLEQAMTQIDQWHQQGLDVP--VSVNVDALHLQLPDFVDRLQQMLAAH 709

Query: 822 -LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L   E+  + +  R   ++   R IGIS  LDDFGT  S L+YL  +P   
Sbjct: 710 PGVLPGDLELEVLETSALNDINRVSTIINECRDIGISFALDDFGTGYSSLTYLKQLPAHL 769

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +    ++IL  ++ +A       IA+ +      + L  MGC+  Q  
Sbjct: 770 LKIDRSFVCDMLDDLEDLSILEGVLGLANAFRCQTIAEGVESVAQGEMLLMMGCELAQGY 829

Query: 939 HVASPLGFNSILKLLKERFP 958
            +A P+  + I   +    P
Sbjct: 830 VIAKPMQAHCIADFIASWRP 849



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 2/162 (1%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           G + +  +I   ++  +         + S  +     + G+    W+W++          
Sbjct: 137 GGITLQAIIILGLVFSIHRGLKLRDELSSQRQSLRNIIWGTDVGTWEWNVRTGEAHLNTR 196

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            A  LG     +    I  W  Y+H +D +  R  L           Q E R+R  +  +
Sbjct: 197 WAATLGYTLDELQPISIETWWMYVHPDDVERSREALHKHFSGESDAYQCEVRMRHKEGHW 256

Query: 493 HWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            W++ R + +  + +G      G   +ITE+K +   +L  A
Sbjct: 257 VWVLDRGKVVAWSESGKPEWVSGTHTEITEKKAAEGSLLQAA 298


>gi|229020829|ref|ZP_04177538.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229027422|ref|ZP_04183670.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228733883|gb|EEL84629.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228740454|gb|EEL90743.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 805

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 157/760 (20%), Positives = 300/760 (39%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    ++  
Sbjct: 56  ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLAITD 111

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318
           +L+ YL  +     +  +       +  +   +             ++  +  +  L   
Sbjct: 112 YLYFYLQDDLSDRSLVLLRCLYRVFLLFIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 171

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 172 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNRD------LTEMLKVF 225

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   +     +      + +L
Sbjct: 226 NNQLEQKVSQRTEDLINKSDDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            DR      L          LQ   +     +   W  + 
Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  KK  + I   AF D +T I NR  F   L   ++ +
Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQQELEKSIEHA 401

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 402 RKTQG-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + ++ +++DL  A+EN+EL+L+Y P +      ++
Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRQLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 579

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I  I  + L+   R +  W        + +
Sbjct: 580 GAEALIRWQHPELGIISPFEFIPIAEETSQIIPIGKWTLQEACRQLKKWHSA-GYANLKM 638

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + ++I +     S I L  +E + M + + +   L  L+  G+
Sbjct: 639 GINLSAIEFEQKDFVQAIISIIEEVGVPASSIDLELTERIAMVDEKETLSKLKALKSYGV 698

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+ +II +A  +   +I
Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIENSTDGNEIIHTIISLAHTLNMKVI 758

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +K L 
Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 798


>gi|262376456|ref|ZP_06069685.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308595|gb|EEY89729.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 859

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/561 (24%), Positives = 262/561 (46%), Gaps = 13/561 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATILGLASGSMHGPIRNWLP 454
           S+            V  S + ++  D+  +R  V   P    + G  +  + G    +L 
Sbjct: 291 SRENKESLRLLKRGVEASPNSLFITDVSEERLMVYVNPAFLKLTGYTAAEVLGQSCFFLQ 350

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               +   +   +L   V  ++  +Q   +    D+ + W  + I P+ +  G    ++G
Sbjct: 351 G--PDTDPDQIALLKQAVKEQKE-IQVTIKSYCKDSSWFWNRLTIGPIFDQTGTCTHFLG 407

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT+Q+   E I      D+LTG+PN+ +F   L   +  +  + +    ++ ID+D
Sbjct: 408 IQEDITQQRIHEEYIQHQHTHDHLTGLPNQYAFKQILEN-IFEAQHESSQPLVLLYIDLD 466

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND LG  VGD +L  +  R+ + ++  ++L R + + F ++L   +   ++   A
Sbjct: 467 DFKNINDSLGHLVGDQILKIVGERLQKFVQGNNVLCRFAEDEFILLLSGTDEHTEVEAIA 526

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   ++M   + + +I ++ASIG  +  SS   SSE++  + LAM  AK +G N  + 
Sbjct: 527 GEILDLLSMLFIVDQYKIHLSASIGIVADDSSIHHSSELIYQSVLAMQEAKRQGRNMWQW 586

Query: 695 F----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +           D   ++ +L  A+      L Y P++      + G+EALI+W HP+ G
Sbjct: 587 YEKTRMQPVAEIDYTNLRLELMEAINQENFDLFYQPLVHPETGLVTGVEALIRWCHPQQG 646

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS + F+ +AE    I ++  ++LE+   DI  W    +   I + +NI+         
Sbjct: 647 YISPAIFIPLAERTGQIISVGQWVLEKACLDIAEWNK-THNSQITVSVNISPLQFRRAGF 705

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++  +  +   P  +K+  +E V++   +R+  +L  +R +G+ + +DDFGT  S L
Sbjct: 706 LQVLEHALELSQLPPELLKIEITEGVIINGADRTIEILKAVRALGVQVAIDDFGTGYSSL 765

Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P + +K + S +       +  AI++SII +A  ++  ++A+ +        L 
Sbjct: 766 SYLRRLPINQIKLDRSFIEELTLDGQDAAIVQSIIHLAHQLDLEVVAEGVETFSQASLLY 825

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
           + GCD +Q    A P   N +
Sbjct: 826 QQGCDLLQGFFYAKPAPLNEL 846



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSG------DIVWDWDIVRDRVTTTPDIA 435
              ++Q        +  +  + + R  L    S       DI+++ D+    + T     
Sbjct: 150 HIQLLQQAAKLVALAIELDQERQKRHELNEKYSSFYTYHPDIIFELDLQGHVLNTNIACE 209

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            I G +   +HG   ++  +I     +            +      E  +        W+
Sbjct: 210 EITGFSKAQIHGQ--HYCAFIPPEFHELANVSFSEAAQGKSQHY--ELPIYNVAGDILWL 265

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +   P+   N  +   IGIA DIT  +++ E +   
Sbjct: 266 DLTNLPII-QNQKVTGIIGIARDITVSRENKESLRLL 301


>gi|324327415|gb|ADY22675.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 825

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 154/774 (19%), Positives = 302/774 (39%), Gaps = 54/774 (6%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    S+  
Sbjct: 81  ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL     +  +  +       +  +  +S   P    S     + +        +I
Sbjct: 137 YLYFYLQDGLSYRSLILLRCLYRVFLLFI-AISATIPRSATSRRNYFIINPTFGKKLLVI 195

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +                       I +   + ++  +  +        V ++I      +
Sbjct: 196 F-----------------PYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRM 238

Query: 388 QHV-------LATGYFSQG--------------IFSDGERQSLAVLGSGDIVWDWDIVRD 426
           Q+        +      Q               +  + ER         D +   D    
Sbjct: 239 QNKDLTETLKMFNNQLEQKVSKRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGT 298

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      + +LG  S ++ G            D+      L   +G R      + RV+
Sbjct: 299 VLNINQSGSMLLGKDSAALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVK 354

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +               G       +  DIT  K+  + I   AF D +TGI NR  
Sbjct: 355 NNNEKDIHFWYVTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIF 414

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L   ++      + +  ++ ID++++K IND LG A+GD VL  +  R    L   
Sbjct: 415 FQQELDRSIERVQKTQD-KFGLLYIDLNRFKNINDTLGHAIGDKVLKEVANRFRTCLPPT 473

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             +AR+ G+ F II+ ++    ++ D    + +    P  + +    ++ SIG A +   
Sbjct: 474 IHIARIGGDEFAIIVHNKT-EQQLLDLCERLFRITEEPFVINQHSFYLSLSIGIALYPFG 532

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724
              ++ +L++A++AMY AK  G N V  +    S   + R+ +++DL  A+EN+EL+L+Y
Sbjct: 533 GTNATTLLQHADIAMYSAKEEGSNAVCIYDETLSQKITRRLQLEQDLPNAIENNELFLLY 592

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P +     +++G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++    +  
Sbjct: 593 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQQACSQLKE 652

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + IN+++ +    +  + + + I +     + I L  +E + M + + +
Sbjct: 653 WHSA-GYTNLKMGINLSAIEFEQKDFVQTIISTIEEIRVPANLIDLELTERIAMVDEKET 711

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
            L L  L+  G+ L++DDFGT  S L+YL   P DT+K     +     +     I+++I
Sbjct: 712 LLKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 771

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A  +   +IA+ +  +  +  L +  C  IQ  + + P+  +  LK L + 
Sbjct: 772 ISLAHTLNMKVIAEGVETKKQLTVLQQNACYLIQGYYYSKPVNEDEFLKFLSKE 825


>gi|71907306|ref|YP_284893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846927|gb|AAZ46423.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 996

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/566 (25%), Positives = 265/566 (46%), Gaps = 16/566 (2%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             +   ERQ L       + D V   D  R  VT    + TI G +   + G    +   
Sbjct: 439 ERYEAEERQRLITHFFDHANDAVLILDAERQVVTLNKAVTTISGYSLDDLKGRPPRF--- 495

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +    +D       S     +G  + E +    D     +   I  + N  G ++ +   
Sbjct: 496 MLEGYQDKVSLDELSLALNEQGVWRGEMKAVRKDGSLLPIYCNISSIRNDAGKVVNWAVF 555

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D++E+K +   I      D LT +PNRQ F   +   L  +      +  +++ID+D+
Sbjct: 556 VTDLSERKAAEARIESLTHVDQLTELPNRQGFSRIMGEWLAAAR-----KGALILIDLDQ 610

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
             ++ND  G A GD +L  ++ R+ ++L+  D L RL G++FG++L      +     A 
Sbjct: 611 LSRVNDAFGHAAGDAMLRRISVRLRKILRDGDFLGRLGGDQFGVLLAQGIRPVVAEVVAR 670

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +IA P+ +   +I  TAS G     S     + +L+NA+ A++HAK  G N    F
Sbjct: 671 KLLDAIAQPVMIEGSDIVTTASAGICLLGSDGHDVASLLRNADNALHHAKDSGQNAFRFF 730

Query: 696 --RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              ++   ++R+ ++ DL  A+  +EL L Y P + +   EI+G E+L++W HP+ G +S
Sbjct: 731 SADMNVRMAERLRLESDLRWALSRNELLLHYQPQVDINSGEIIGFESLLRWQHPELGMVS 790

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE  +I  I  ++LE   R   +W+D    P + + +N+++      ++   
Sbjct: 791 PVNFIPLAEESRLILPIGTWVLEEACRQNKAWQDAGMAPKV-VAVNLSAVQFHGADIVAL 849

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   +  +      ++L  +ESV++ +PER   ++  L+ +G+ L++DDFGT  S LSYL
Sbjct: 850 VSQSLQNSGLEARYLELEITESVIIEDPERVIRIMDELKMLGVGLSIDDFGTGYSSLSYL 909

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K + S +          AI+R +I +A+ +E  +IA+ +     ++ L    
Sbjct: 910 KRFPIDKIKIDRSFVRDLEHNTNDAAIIRMVIGIAEELERKVIAEGVETVEQLEFLRSHH 969

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           CD  Q  + +  +    I  L+  R 
Sbjct: 970 CDEYQGFYCSPGVPAGEIPDLVASRQ 995



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 51/192 (26%), Gaps = 11/192 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT------VIQHVLATGYFSQ 398
               +        +        +  A +G ++ + ++               LA      
Sbjct: 262 FPFVVIVGLAEAEVLAEWRRRAVVYAFLGIVLAVALIALMRSWGMGYRQAEALAEKLAKD 321

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                 E ++L +    D  W  D     +          GL    + G   + L     
Sbjct: 322 FADKTREGRAL-LDSIPDPAWLLDNEGHYLAVNEAFCHYKGLPMEQVLGHTVDELF---P 377

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +           V  + G ++    +     +         P+   +G      G+A D
Sbjct: 378 AEEAKVLRDGQLEVYRKGGPVREVVWLHLR-GKLSPFEFLRVPVYRDDGQPRGLAGVAWD 436

Query: 519 ITEQKKSLEGIL 530
           +TE+ ++ E   
Sbjct: 437 MTERYEAEERQR 448


>gi|73541330|ref|YP_295850.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
 gi|72118743|gb|AAZ61006.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
          Length = 879

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 150/626 (23%), Positives = 270/626 (43%), Gaps = 18/626 (2%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
               +P + L F+    + + +        I  A      L+V L+ +++ + ++     
Sbjct: 263 GYYRMPEFGLNFVVGESVGLVLAPYEVYRRIALAGAMASTLLVGLLYYSLRRSMVERRRH 322

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +       +L    S + +    +    +   P  A   G     + G     +   
Sbjct: 323 LEEMRLA----ALVYSSSSEAMMVTSVDGTIIDANPAFAAATGYTVEEIKGRSGYGISGA 378

Query: 457 HIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                  +  R  L       +GR   EF +R  D       + +           R + 
Sbjct: 379 GNAAGLVERLRATL-----GAKGRWSGEFSIRRKDGSEFPAYLTVDTYLAHQYGEHRRVA 433

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +D+TE++++ E I   A  D LT +PNR+ F +RL   ++ S    ++   ++ ID+D
Sbjct: 434 LIHDMTEKRQAEEVIRHQANFDALTDLPNRRLFFERLEQEIERSRGTQDV-LALLFIDLD 492

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K++ND LG   GD +L+   RRI   ++  D +ARL+G+ F +IL +  ++      A
Sbjct: 493 RFKEVNDTLGHDQGDLLLLEAARRIAASVRASDTVARLAGDEFTVILPAVGDAGVAGGIA 552

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            A+ + IA P  L    + V+ASIG A++      +  +L  A+ AM+ AK  G N  + 
Sbjct: 553 EAILQQIAAPYRLAGELVVVSASIGVATYPKDADNAEALLVYADHAMFAAKEEGRNRWKI 612

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +      +R+ I +DL  A+ + +  L Y PI+ L   ++   EALI+W+HP  G I
Sbjct: 613 FTQALLQAERERLRITQDLRTALASEQFALHYQPIVDLRTGKVCKAEALIRWNHPVRGPI 672

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-C 811
              +F+ +AEE  +I  I  ++L    R +  W          I +N +  +        
Sbjct: 673 HPVDFIAVAEESGLIIDIGRWVLTEALRQLARWHVLLGK-DFQISVNKSPMEFCAPSSGP 731

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E   ++I +       + +  +E+ +M         L R +  GI + LDDFGT  S LS
Sbjct: 732 ESWSSMIERRNVPVGSLVIEITENSLMEQNADVMDQLSRFQAAGIEIALDDFGTGYSSLS 791

Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +  D +K + S +   T     +A+ R+II MA  +   +IA+ +  +     L  
Sbjct: 792 YLRRLDIDYIKIDRSFIRSLTRGPDDVALCRAIINMAHALRIRVIAEGVETQSQRDILLA 851

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GCDY Q      P+  ++    +  
Sbjct: 852 AGCDYGQGHFFCPPVEASAFEAFVSA 877


>gi|332993532|gb|AEF03587.1| Diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 877

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 127/580 (21%), Positives = 252/580 (43%), Gaps = 16/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
             +I+   +    +       E   R +     + + +   D     +     +  I G 
Sbjct: 287 LALIEQTASLASIAIEKNRSEETLKRAASVFTHANEGIIITDASATIIEVNDTLCRITGY 346

Query: 441 ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +   + G   R      H      F   + + +    G  + E      D + +  ++ I
Sbjct: 347 SKSEVLGKNPRILQSGRHS---AQFYKNMWNTLNTD-GHWRGEIWNCRKDGEVYPEMVTI 402

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + ++ G +  Y+ ++ DI+E K +   +   A  D LT +PNR     RL   +  S 
Sbjct: 403 SAVKDAEGQVQHYVSLSTDISEIKLNEGKLERIAHYDLLTNLPNRVLLAKRLNQAIKHSQ 462

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              N    V  +D+D +K IND  G  +GD  LV ++  +   L+  D +AR+ G+ F I
Sbjct: 463 LQQN-SLAVAFMDLDGFKAINDNYGHDIGDQFLVEVSNGLKASLRAGDTIARIGGDEFII 521

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I+ + +           + KS + P+N+ E  + V+ASIG   +    + + +++++A+ 
Sbjct: 522 IMANLDEFSDCEHVLNRLLKSASAPVNIAEAVMQVSASIGVTVFPQDNVDADQLIRHADQ 581

Query: 680 AMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N    F     +  +      +++ +A++  E  L Y P + +   E++G
Sbjct: 582 AMYVAKQGGKNRYHQFDLEQDNAINSYNKSIDNVRVALDRKEFVLHYQPKVNMRSGEVIG 641

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W+HP+ G I   EF+ + E   +   +  ++++     I  W+ +     + + 
Sbjct: 642 VEALLRWEHPESGLIPPLEFLPVIEGHGISLKVGEWVIDAALTQISHWQRRG--ISLPVS 699

Query: 798 INIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
           +NI++  L  +     +Q L++      P  ++L   E+  + +  +    +     +G+
Sbjct: 700 VNISAHQLQQDNFTSRLQTLLAAHPDVDPGYLELEILETSALQDTFQVSSTMNACHDLGV 759

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           S  LDDFGT  S L+YL  +P   +K + S +         +AI+  ++ +AK  +  +I
Sbjct: 760 SFALDDFGTGYSSLTYLKRLPAYLIKIDQSFVRDMLDDTDDLAIVEGVVGLAKAFKREVI 819

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +        L  +GC   Q   +A P+  N + + L 
Sbjct: 820 AEGVESVEHGVALIHLGCVLAQGYGIAKPMPANQVSQWLT 859



 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/123 (10%), Positives = 43/123 (34%), Gaps = 4/123 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  S D V+  D     +        ++ ++   + G    +   I+  +          
Sbjct: 30  LDISADPVFIKDGEGKLLVANNAFCELVNVSRKKLIGK--TFSNKIYPQELVKLAHSDQY 87

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +     ++  E  ++   NQ   ++ ++    + N      +G+  D+T+++++     
Sbjct: 88  VLDTGEDKV-IEQALQGKGNQARVVLAKLSRFIDRNNR-RFIVGVIRDVTKRRQNELRET 145

Query: 531 CNA 533
             +
Sbjct: 146 TRS 148


>gi|157737133|ref|YP_001489816.1| EAL/GGDEF/PAS domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157698987|gb|ABV67147.1| EAL/GGDEF/PAS domain protein [Arcobacter butzleri RM4018]
          Length = 826

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 143/573 (24%), Positives = 272/573 (47%), Gaps = 12/573 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            L  I+ +    ++   + T   S    ++      AV  S + +   D  R+ +     
Sbjct: 257 NLSFILFVASIFLLCSFIYTYQKSLKTKNELNAFKYAVANSDNSIVITDENRNILYVNEA 316

Query: 434 IATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
                G     M G   R     +       F   +++ +  R  +   EF+ +  + + 
Sbjct: 317 FEKATGYTKDEMIGQNPRILKSGLLP---AEFYKNINAILD-RGEKWIGEFKNKKKNGEI 372

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           ++    I P+  +  +I  Y+ I  D+T+  K  E +   A+ D+LT +PNR+S   ++ 
Sbjct: 373 YYETASITPIILNE-NIKGYLAIKLDVTDYIKEKEKVEFLAYHDSLTMLPNRRSLQIKVE 431

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            I++ S  ++  +  ++ ID+D +K INDVLG   GD +L  ++ R   +     ++ R+
Sbjct: 432 KIIEDSFKNNK-KFALLFIDLDGFKVINDVLGHDTGDKLLKEVSLRFKNIFDGNSLVFRI 490

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F II   EN+   I   A  + K++   I +    + +  SIG A +         
Sbjct: 491 GGDEFAIIFEYEND-DLIILNAQYIIKNLNETIVIGNNSLHIGCSIGIARYPLDGDDLVS 549

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +LK ++ AMY AK +  N  E +        S R+ I++ L  A+EN E YLVY P   L
Sbjct: 550 LLKYSDTAMYKAKQKSKNRYEFYTEDLTKTVSSRLKIEQALSKALENEEFYLVYQPKYNL 609

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             +EI  +E L++W +P  GN+S  EF+ IAEE+ +I  +  F+ ++   D +  +++ N
Sbjct: 610 KTKEIFSVETLLRWKNPILGNVSPDEFIYIAEEIGLIHELGFFVFKKACEDFVKLQNKIN 669

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
           +    I IN+++  L+ +   + ++ ++ +T      I +  +E+  + N + +   L  
Sbjct: 670 IQ--MITINVSTLQLVRSNFIDEIKKILIQTNIDTINIGIEITETYFIENMKDTEKSLNE 727

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910
           L+ +G  + +DDFGT  S L YL  +P D +K + S ++   +   +I+R+I+ ++K+  
Sbjct: 728 LQNLGFKILIDDFGTGYSSLQYLQKLPIDIIKIDKSFVSSLDDNNDSIIRAIVALSKSFN 787

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            T +A+ I  +    +L  +G D+ Q    + P
Sbjct: 788 YTTVAEGIETKEQEDKLIELGVDFGQGYLFSKP 820


>gi|30262524|ref|NP_844901.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47527823|ref|YP_019172.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185366|ref|YP_028618.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|30257156|gb|AAP26387.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47502971|gb|AAT31647.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179293|gb|AAT54669.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
          Length = 912

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 155/754 (20%), Positives = 304/754 (40%), Gaps = 20/754 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 165 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 220

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 221 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 279

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 280 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 339

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 340 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDPNGTVLNINQSGSILLGKDSA 399

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+      L   +G R      + RV+  + +  +         
Sbjct: 400 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 455

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +     
Sbjct: 456 MIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG 515

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ +
Sbjct: 516 -EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVHN 574

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 575 HT-EQQLLDLCENLFRITEKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 633

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EAL
Sbjct: 634 AKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEAL 693

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L+   + +  W        + + IN++
Sbjct: 694 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINLS 752

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 753 AIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSID 812

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ + 
Sbjct: 813 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVE 872

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +  L +  C  IQ  + + P+  +  +  L
Sbjct: 873 TKEQLTVLQQNACYLIQGYYYSKPVNEDEFINFL 906


>gi|126651781|ref|ZP_01723983.1| sensory box/GGDEF family protein [Bacillus sp. B14905]
 gi|126591459|gb|EAZ85566.1| sensory box/GGDEF family protein [Bacillus sp. B14905]
          Length = 573

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/561 (24%), Positives = 242/561 (43%), Gaps = 37/561 (6%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471
            S  IV   D              I       + G     L    H   +  FR +  + 
Sbjct: 28  NSSIIVAITDRTGKITFVNDHFCKISKYTREELVGQDHRLLNSGYHP--KSFFREMWRTI 85

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                     E   RA D   +W+   I P  +  G   +YI I  DIT QK  ++ I  
Sbjct: 86  --GNGEMWNGEVCNRAKDGSLYWVKTTIFPFLDERGKPYQYIAIRVDITAQKD-IKKITH 142

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LTG+PNR+    RL      S      +  +  ID++++K IND LG  +GD  
Sbjct: 143 IAYHDELTGLPNRRKLEQRLENEFHQSRRTGE-KFALFFIDVNRFKHINDGLGHIIGDMF 201

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           LV ++ R+  +    +   R + + F +IL   N+  +I + A  +         +   E
Sbjct: 202 LVEMSNRLRNIDYTSNSFYRHNSDEFVMIL---NDVNRIEEMAKEIISVFNESFVVDNYE 258

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
              + SIG + +     T  E+LKNA++AMY AK   GN    +R +        ++++ 
Sbjct: 259 FYASISIGISIFPDHANTVEELLKNADIAMYAAKSTRGNQYRLYRDNMDEANDKWLLLET 318

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++   L L Y P I L  + I+G+EAL++W  P+ G+I    F+  AEE  +I  
Sbjct: 319 KLHQALKKDLLELHYQPKIDLKTDTIIGMEALLRWYDPELGHIPPDRFIPFAEECGLIND 378

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I +++L +       W +  +   + + +NI+   +  +   + ++ +I+ T   P  ++
Sbjct: 379 IGVWVLGKACAQAKLWNES-HRLRLRVAVNISPIHISTSGFVDMVKGVIAGTGIDPHLLE 437

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E  ++   E     + +LR +GI+++LDDFGT  S L+YL   P D +K + + + 
Sbjct: 438 IEITEMSMLDYTEDLINTINQLRALGITISLDDFGTGYSSLNYLKKFPVDVLKIDRAFVR 497

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID-----------IKELTRMGCDYIQ 936
               ++   A++ ++I +A  +                         +  L   GC+Y+Q
Sbjct: 498 DIVPEKSGIAMISAMISLAHALNL-----------QVVAEGVEEEAELNVLREHGCEYVQ 546

Query: 937 DSHVASPLGFNSILKLLKERF 957
             + + PL       L+ + F
Sbjct: 547 GYYFSKPLSVEDFTNLIVQSF 567


>gi|209886005|ref|YP_002289862.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
 gi|209874201|gb|ACI93997.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
          Length = 907

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 143/623 (22%), Positives = 275/623 (44%), Gaps = 35/623 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I+I                  ++        + +V+++ F V + +       Q +  + 
Sbjct: 299 IVIIATKTVDAALKDWYEQIRMLVLIAFSASMAVVLIVWFIVRRLMSQHQAARQRLMLEK 358

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRD 462
           +R   AV      +  +D     V      A I  L    +     +R+ +  +    R 
Sbjct: 359 QRLDTAVNNLKQGLLLFDANHRLVVVNRRYAEIFHLPRRDIAPGCSLRDIMELLRR--RG 416

Query: 463 NFRTILDSF------VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            F+  ++S+      +    G L  E      D +      +      S G    ++   
Sbjct: 417 MFKGDIESYCLNALNLASDSGSLTTEI----PDGRIIHTNFQAI----SGG---GWVSTF 465

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++++ E I   A  D LT +PNR  F D L T+L  S         V+ ID+D++
Sbjct: 466 EDITERQRTEERIAHMARYDALTDLPNRTMFRDHLETMLRQSE-----PLAVLSIDVDEF 520

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND LG  VGD++LV++  R+ + ++  D++ARL G+ F I+         +      
Sbjct: 521 KQVNDTLGHFVGDELLVAIAGRVSDCMEPGDLVARLGGDEFAIVRHGVRERADLIPLIER 580

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +I +P + +   + V ASIG A           +L+NA+LA+Y AK  G      F 
Sbjct: 581 VHAAIRLPYSCVGHRLNVDASIGVAVSPCDGSELEGLLRNADLALYAAKGSGRRTYRFFE 640

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  +    ++ ++  A+   E  + Y P + +  + ++G EAL++W HP+ G IS 
Sbjct: 641 PEMQVRAQKRHDLEMEIRSALARQEFEVYYQPFVDIKTKTVLGAEALVRWRHPERGLISP 700

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+ IAEE  +I  +  ++L+       +W ++     + + +N++      + L   +
Sbjct: 701 ADFIPIAEETGLIDQLGSWVLKTACHAAANWPER-----VRLAVNVSPVQFKGHTLALNV 755

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A +  +    +R++L  +E+V++ + E +  +L  LR +G+ + LDDFGT  S L YL 
Sbjct: 756 AAALGSSGLPANRLELEITEAVLIRDDEEALAILHELRGLGVRIALDDFGTGYSSLRYLQ 815

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K +   ++   E      I+++++ +A     T  A+ +     +  L R+GC
Sbjct: 816 LFPFDKIKIDRCFISNINEPHGASHIVKAVVDIAAARNMTTTAEGVETAAQLDALRRLGC 875

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D +Q    + P    ++  ++  
Sbjct: 876 DQMQGYLFSPPQTEEALAHIVAS 898


>gi|109899742|ref|YP_662997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
 gi|109702023|gb|ABG41943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
          Length = 684

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 263/574 (45%), Gaps = 17/574 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +                       + D+ +  +     + +       LG +     G 
Sbjct: 122 DLADVRQAQAQAKFKDNMLEAVFEATPDLFFLMEEDGTIIDSHGGDDKYLGASPSECVGR 181

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L            T+ +  V  + G   +E+ +   D    +   R+  +   N  
Sbjct: 182 TITDLF---PRKVARKYTLFNKRVIEQEGISTFEYELTLPDG-IRYFEARLSHVKAYN-- 235

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             + + I  DITEQ K+ + I  +A+ D+LT +PNR   LDRL+ +L  +  ++  +  +
Sbjct: 236 --QIVVIVRDITEQHKAAQTIRHHAYYDSLTLLPNRFLSLDRLSQMLKEAQRNEE-KAAL 292

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D +KK+ND LG  VGD +LV    ++   L+  D + RL G+ F ++L +  +  
Sbjct: 293 LFLDLDDFKKVNDSLGHEVGDKLLVEAANKLTLALRKADTVGRLGGDEFIVLLRALADDN 352

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              + A  + +    P  +  +E+ +T SIG  ++  +  ++S++L++A+ AMY +K  G
Sbjct: 353 DAKEVAENLLRVFRDPFLIDGKELILTLSIGIVTYPENGSSASDLLRHADAAMYQSKLSG 412

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F             I+  L  A++  E  + Y P   + +  ++G EALI+W +
Sbjct: 413 RNTYSFFTKEMNAIMLRRFEIEGQLNQALQRKEFEVFYQPKFSVQNRNVIGAEALIRWRN 472

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  GN+   EF+ IAE   +I  I  +++E+    +  W    +     I +N++ +   
Sbjct: 473 PILGNVPPDEFIPIAEHTGLIVPIGKYVIEQALEFLREW-ASIHNKNYTIAVNLSPRQFR 531

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D EL   + + +SK   SP  ++   +E V+M         L  L ++G+ L++DDFGT 
Sbjct: 532 DKELINFILSALSKEEISPQNLEFEITEGVLMVGNAYVEEALEELHQLGVKLSMDDFGTG 591

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL    FD +K + S + G    ++   ++++ I MA +++  ++A+ +     +
Sbjct: 592 YSSLSYLRRYSFDILKIDRSFIDGITVNKEDFDLVKATIAMAHSLDLEVVAEGVETHEQL 651

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             L ++GCD +Q  + + P+   +++     R+P
Sbjct: 652 MLLDKLGCDLVQGYYFSKPVPAQALIDY---RYP 682


>gi|148547279|ref|YP_001267381.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148511337|gb|ABQ78197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 699

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 147/571 (25%), Positives = 248/571 (43%), Gaps = 15/571 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441
              ++Q       +SQ +    +     +      V   D+   R+         + G  
Sbjct: 129 ELELLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGP 188

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             SM G +      +     D             +G    E RV  A      +  R   
Sbjct: 189 QRSMIGQLP--RECLAPAAGDYLEQQFVRGARSTKGH-AAETRVDTARG-PRTLRSRTLL 244

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N  G     + +A D TE+  +   I   A  D LTG+PNR  F +RL   L   + +
Sbjct: 245 SQNREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSEN 304

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             L   +  +D+D +K IND LG A GD +L  L +R+   L+  D LARL G+ F ++L
Sbjct: 305 AKLTAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVL 363

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                     + A  + K+I+ P  +   +  V  SIG A        + ++L  A++A+
Sbjct: 364 TGLEGRDAACNTAQRLIKAISPPFQIEGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMAL 423

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N  E F V        R +++ DL  A+   +L L Y P++      + G E
Sbjct: 424 YQAKRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDHQTSSVTGYE 483

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G +   +F+ IAEE  +I  +    L    ++  SW  +       + +N
Sbjct: 484 ALLRWEHPTRGMVMPMDFIPIAEETGLIHELGNRALNLACQEAASWDSEQ-----TVSVN 538

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++    + +L   +   ++ +   P R++L  +ESV++GN E +   L  L+ +G+S++
Sbjct: 539 LSAVQFKNGDLVHTVALALADSGLPPQRLELEITESVLLGNSEENVRTLRALKDLGVSIS 598

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S L YL   PFD +K + S +    + R A  I+R+I  ++ ++     A+ 
Sbjct: 599 LDDFGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIIRAITELSNSLMIKTTAEG 658

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  E  ++ L   GC + Q      P   + 
Sbjct: 659 VESEEQMRRLAAEGCSHFQGYFYGRPAPASE 689



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 7/128 (5%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF- 464
             L +    D  ++            P      G  +  + G   +        D +   
Sbjct: 11  YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYRAEEIVGQHYSLFYT----DAERVA 66

Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L+       GR +        D       + I  + +  G ++ +  +  DI+E+ 
Sbjct: 67  GLPALNLEQARSTGRFEETGARLRKDGTVFHAHVVIEAVYDDTGQLVGFAKVTRDISERH 126

Query: 524 KSLEGILC 531
           +    +L 
Sbjct: 127 RQELELLQ 134


>gi|319956972|ref|YP_004168235.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Nitratifractor salsuginis DSM 16511]
 gi|319419376|gb|ADV46486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitratifractor salsuginis DSM 16511]
          Length = 747

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/552 (24%), Positives = 256/552 (46%), Gaps = 12/552 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
               + + ++        V        ILGL   ++ G  + ++   +      +    L
Sbjct: 197 IFEDATEGIFITSYDGSYVEANEAFYHILGLEDKALPGIRLDDFQSLVDPRTYQHIVQSL 256

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +            E ++R        + + I  + N  G++   + +  DI+E ++S E 
Sbjct: 257 EI-----DKSFHGEVQIRNESGHDKLIWLTIDTIYNEYGEVEYRVAMLTDISELQRSREK 311

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR    +RL  +L+ S ++ +    +  ID+D +K IND +G AVG
Sbjct: 312 LRYTATHDILTRLPNRALLFERLDEVLNQSQSNGS-EGALFFIDLDNFKIINDTVGHAVG 370

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VLV    RI  +++  DI  RL G+ F +I+ +  +       A  + + I  P+   
Sbjct: 371 DKVLVECVERIMRVIRREDIFGRLGGDEFLLIVENIKDHDVPMYLAQKILEEIRKPMEFE 430

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
                ++ASIG A +    +   E+++ A++AMY AK  G N    +  ++         
Sbjct: 431 GERFEISASIGIAVFPKDSLEREELIRFADMAMYRAKQEGKNRFCYYSTKMDQAIRKYHQ 490

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  L  A+ +   YL+Y P + +   +IVG+EAL++ D     + + SEF+ IAEE  +
Sbjct: 491 IERQLKEALNSEGFYLIYQPQVDIASGKIVGVEALLRVDEYIALDFNPSEFIPIAEESEL 550

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  ++     R +  W D++   P+ + IN++ + LLD    E +  +I+     P 
Sbjct: 551 INRIGEWVFHESCRQVRHWLDESGTAPL-VAINLSRRRLLDEYFPERLTEIIAGYDLEPC 609

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             +L  +E++     E +  ++ RL+++G  + +DDFGT  S L+ L +   D +K + S
Sbjct: 610 HFELEITETIFSQMSESNCQVISRLQEMGFLIAIDDFGTGYSSLANLKHFNVDKLKVDRS 669

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            ++     E   AI  + + +A ++   +IA+ +     ++ L  MGCD +Q    + P+
Sbjct: 670 FVSDIAKNESDRAITEASVNLAHSLGLKVIAEGVETREQLEILREMGCDEMQGHLFSPPI 729

Query: 945 GFNSILKLLKER 956
               I +++ E 
Sbjct: 730 PPEKIQQMILEH 741


>gi|54292994|ref|YP_125409.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens]
 gi|53752826|emb|CAH14260.1| hypothetical protein lpl0030 [Legionella pneumophila str. Lens]
          Length = 976

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/576 (23%), Positives = 270/576 (46%), Gaps = 11/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++      +   +   + + A+  S  +V   D           +    G     +
Sbjct: 407 LVLAIVRDITLQKRSEATIRKLTRALEQSPVLVIITDKTGTIEYVNAKVIEQTGYRKEEL 466

Query: 446 HG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R        ++       +   +         E   +    +  W+   I P+ N
Sbjct: 467 VGGNTRILRSGQTPHE---IYKTMWEHLAN-GEEWHGELLNKNKSGEHFWVSAIISPIRN 522

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            N +I  Y+ +  D+T++K   E +   A  DNLT +PNR   +++L  ++  S  ++  
Sbjct: 523 ENEEITHYLAVMEDVTQKKSYEEMLKHQATFDNLTNLPNRLYAVNKLERVISKSHINNQ- 581

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+ +D+D++K+IND LG A+GD +L +L+ R   +++  D +ARL G+ F +IL + 
Sbjct: 582 KLAVLFLDLDEFKQINDSLGHAIGDLLLKALSERFLSMIRQTDTIARLGGDEFMMILENI 641

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A   R+  + P  +  +E+ V+ SIG A +      +  +++NA+ AMY +
Sbjct: 642 MQDKDAEIIAKKCREICSQPFVIESQELLVSTSIGIAIYPEHGKDAKTLMRNADTAMYQS 701

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG N+   F+ +     ++ + IK +L  A   +ELY+ Y PII L + ++V  EAL+
Sbjct: 702 KIRGKNNWTVFQNTMIEGANNHIRIKTELDQAFTRNELYICYQPIIELKENKVVAAEALL 761

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W +   G I+  + + +AEE  MI  +  ++L+++      W        I + +NI++
Sbjct: 762 RWQNTTLGQINPDQIISLAEETGMIIPLGYWILDKVCAQAKEWEFITG-SKIKVAVNIST 820

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +    +Q ++ +T  S   +    +ES  + + +     L +L  +GI  +LDD
Sbjct: 821 LQLKQKDFIHKVQLILKRTKLSADSLIFEVTESAFIDDSKFILSQLNKLSDMGIHFSLDD 880

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S L Y+   PF  +K +   +    +   +++++ SII MA+N++ ++IA+ I  
Sbjct: 881 FGVGYSFLQYIKSYPFKNLKIDRVFIQGVNTNHNQLSLINSIITMARNLKLSVIAEGIET 940

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++ +  M CD +Q  + + PL  +  L  L  +
Sbjct: 941 AEQLELMRSMNCDMVQGWYFSKPLSGDKFLFYLMNK 976



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     + Q +    +    +    ER    +    D ++  ++    +         L 
Sbjct: 283 ITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTDGIFIHNLQGAFLEVNEAACLSLN 342

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
            +   +       +           +  L+      ++G +  E   R  D     + +R
Sbjct: 343 YSREELINSYVWDIE------VGFSQESLNQLWENVQKGSINTEGMHRRKDGTTFPVDVR 396

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + N+ G+ L  + I  DIT QK+S   I   
Sbjct: 397 LA-VFNATGEKL-VLAIVRDITLQKRSEATIRKL 428



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 50/170 (29%), Gaps = 12/170 (7%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
             +++  F  I  +L             +  +  +  +GD V   +         P    
Sbjct: 152 FEILMPFFKDILGLLNLSLAKLMNKKREKLLTTILEKAGDSVEITNEEAVIQYVNPAFEN 211

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I    +          L    + D   F  I  +         + + R R  D  +    
Sbjct: 212 ITLYNAREAMNKTVASLLRSPVEDAQLFEEINQTLKSGNT--WKGQIRSRKKDGSYWVAQ 269

Query: 497 IRIRPMSNSN-GDILRYIGIANDITEQ-------KKSLEGILCN--AFQD 536
             I P+ +   G I ++I I  DITEQ       K S E       A  D
Sbjct: 270 TIIVPVMDDELGRITQHIAIKQDITEQVHRFNQLKISEERYRNLMNAVTD 319


>gi|225865728|ref|YP_002751106.1| sensory box/ggdef family protein [Bacillus cereus 03BB102]
 gi|225789603|gb|ACO29820.1| sensory box/ggdef family protein [Bacillus cereus 03BB102]
          Length = 906

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 311/725 (42%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + K +     + E  + +
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFKCMEKSFIIHEHTLNL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLYYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVTFLQKNKCQFIQGYYYSKPIHINAFT 897

Query: 951 KLLKE 955
           +LLK 
Sbjct: 898 ELLKS 902


>gi|119487305|ref|ZP_01621056.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase [Lyngbya sp. PCC 8106]
 gi|119455860|gb|EAW36995.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase [Lyngbya sp. PCC 8106]
          Length = 2038

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 154/622 (24%), Positives = 278/622 (44%), Gaps = 48/622 (7%)

Query: 356  MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSL 409
            +     L+N++I  A     V ++ L+   +   +  +            +  + ++ + 
Sbjct: 1439 LIGLLYLENNLICDAFQAERVELLNLLSTQMAIAIENSRLVQHQEELNNSLQQERQQITR 1498

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             +    D     D     V        IL   S  + G                   + +
Sbjct: 1499 ILERITDGFIGIDRQWKIVYINQKAEQILEKKSQQIKGKT-----------------LWE 1541

Query: 470  SFVGYRRGRLQYEFRVRAADN-----------QFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +         + ++R                   +W+ I + P  +  G  +       D
Sbjct: 1542 ACSETMTLLHEQQYREAQETGQSVCFEAFYSSSNYWLEITVYP--DQEGLSIF----FRD 1595

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT +K+  E ++ +A  D LTG+PNR    + L  ++  +  + N R  V+ +DID++K 
Sbjct: 1596 ITGRKQMEEKLISDAQHDALTGLPNRLLLSEHLQQMIQRTQEEQNYRYAVLFLDIDRFKV 1655

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IN+ LG  VGD +L+++ +R+   +   DI+ARL G+ F I+L   +N       A  ++
Sbjct: 1656 INESLGHLVGDQLLIAIAQRLKGCITQQDIIARLGGDEFIILL---DNPEDEVRTAARIQ 1712

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
             ++  P NL   ++  T SIG  S  ++     E+L++A++AMY AK  G      F   
Sbjct: 1713 MALNAPFNLNGYKVFNTVSIGIVSSNTTYTRPEELLQSADIAMYQAKAEGRARYVIFDTT 1772

Query: 697  VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +    +  + ++ DL LA+E  +L + Y PI+ L   ++ G EAL++W HPK G IS  +
Sbjct: 1773 MQERATSLLQLETDLRLAIEVEQLCVYYQPIVALKTGKLAGFEALVRWLHPKKGIISPIK 1832

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  I  ++L++    +  W++Q      + + +N++ K     +L   + 
Sbjct: 1833 FIPLAEETGLIIPIGQWVLQQACYQLKVWQEQFPQLEKLTMSVNLSVKQFSQVDLIPRID 1892

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++S        +KL  +ES +M N ER+R LL +L+   I L +DDFGT  S LSYL  
Sbjct: 1893 QILSDLDLPGHDLKLEITESALMNNFERTRELLLQLKSRQIQLCIDDFGTGYSSLSYLHQ 1952

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P D +K + S +     + K   I+R+II ++ N+    IA+ I     + +L    C+
Sbjct: 1953 FPVDILKIDRSFVRRLEGSNKNDEIVRTIIALSHNMSIAAIAEGIETSQQLAQLRNYRCE 2012

Query: 934  YIQDSHVASPLGFNSILKLLKE 955
            Y Q      PL   +    + +
Sbjct: 2013 YGQGYFFDRPLDALAATDFIAQ 2034


>gi|187927096|ref|YP_001893441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|187728850|gb|ACD30014.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
          Length = 887

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 149/595 (25%), Positives = 253/595 (42%), Gaps = 13/595 (2%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRD 426
                     I   +   ++   L      +    D  R + L    S + +    +   
Sbjct: 293 AYRRTALAGAIGSTLLMALLYATLRRSMSQRKQHIDEMRLASLVYASSSEAMMVTTLDGT 352

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +   P      G  +    G   + +     +        + + V  + G    E+ +R
Sbjct: 353 VIDVNPAFTVTTGYTAQEFKGQHSDAIRSECND--SAVVDTMRTAVTTK-GTWSGEYLIR 409

Query: 487 AADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
             D      ++ +   +    G   R + + +DITE+K++ E I   A  D LT +PNR 
Sbjct: 410 RKDGTEFPALLTVDTFAGHKLGAPSR-VALIHDITEKKRAEEVIWRQANFDTLTELPNRH 468

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  +L   +  +         ++ ID+D++K++ND LG   GD +L  + RRI  +++ 
Sbjct: 469 MFYAKLRQEILHARQAATA-VALLFIDLDRFKEVNDTLGHDQGDVLLKEIARRISAIVRG 527

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARL G+ F IIL +  ++   A    ++   IA P+ L E  + VTASIG A +  
Sbjct: 528 TDTVARLGGDEFTIILPNLPDAGAAAPIIRSLLARIATPVQLGEESVEVTASIGLALYPR 587

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
               +  +L  A+ AM+ AK  G N    F  +  R   +R+ I  DL +A+E  +L + 
Sbjct: 588 DADNAESLLVRADQAMFAAKSAGRNQWSVFTPALQRAEQERLRITSDLRIAIEQKQLAVH 647

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+ L    I   EALI+W HP  G I  ++F+ +AEE  +I  I  ++L     ++ 
Sbjct: 648 YQPIVDLRSGAINKAEALIRWTHPVRGEIEPADFIPVAEETGLIVQIGKWVLNEALTEVT 707

Query: 784 SWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            W        + + +N +  +      L +    ++ +    P  + +  +E  +M    
Sbjct: 708 RWHTVLGRH-MQVSVNKSPVEFRAAGQLGDSWADVVKRRAIRPGSLVIEITEGALMEGSA 766

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L RLR+ GI + LDDFGT  S LSYL     D +K + S +       K IA+  
Sbjct: 767 EVVDHLTRLRQAGIEIALDDFGTGYSSLSYLKRFDIDYIKIDQSFVRSLAHDPKDIALCS 826

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ MA  +   +IA+ I  E     L   GCDY Q      P+   +    + +
Sbjct: 827 AIVSMAHALRIKVIAEGIETEEQKAILVAAGCDYGQGHLFCPPVPPAAFEAFVAK 881


>gi|239816552|ref|YP_002945462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Variovorax paradoxus S110]
 gi|239803129|gb|ACS20196.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Variovorax paradoxus S110]
          Length = 1107

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 133/441 (30%), Positives = 231/441 (52%), Gaps = 6/441 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++K++   +   A  D LTG+ NR +    L   +  S      +  V+ +D+D++K IN
Sbjct: 659  QRKQAERSLRFMASHDGLTGLFNRAALQHELARAIKRSNRHQK-QFAVIFVDLDRFKHIN 717

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG  VGD+++     R+  LL+  D++AR  G+ F ++L + +++   A  A  +   
Sbjct: 718  DTLGHGVGDEMIKICGERLTALLREADVVARFGGDEFVLLLENLSSANDAAGLAEKVLAC 777

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
             A P  L  RE+ V+AS+G + +  +   +  +LKNA+ AMY AK RG N    +  +++
Sbjct: 778  CAEPFFLAGRELHVSASVGVSIYPDNGADAEALLKNADTAMYRAKERGRNTFRFYAAKMN 837

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  ++++M++  L  A+E  EL + Y P + L  + IVG+EAL++W HP  G I   +F+
Sbjct: 838  AQNTEQLMLESALRHALERGELEMHYQPKMDLQTQRIVGVEALMRWHHPILGMIPPVQFI 897

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             IAEEL +I ++  + LER   D  SW+    +P + + +N++ +      L   +QA++
Sbjct: 898  PIAEELGLIVSLGKWALERACADSRSWQK-YGLPKVLMSVNLSPRQFESRTLIADIQAVL 956

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
              +   PS ++L  +E  VM NPE +  LL  +R +G+ L +DDFGT  S LSYL + P 
Sbjct: 957  EASGLEPSLLELEITEGAVMANPEHAAKLLRAIRDMGVGLAIDDFGTGYSSLSYLKHFPL 1016

Query: 879  DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             TVK + S +          A++  II +A  +   ++A+ I     +  L   GCD  Q
Sbjct: 1017 STVKIDRSFINDLSQDADARALIDGIITLAHGLRMKVVAEGIETTAQLDYLRSHGCDEAQ 1076

Query: 937  DSHVASPLGFNSILKLLKERF 957
               +  P+  + +   +    
Sbjct: 1077 GYWLCKPVPADEVRNFMARHL 1097



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 63/203 (31%), Gaps = 21/203 (10%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--FSQGIFSDGERQSLAVLGSGDIVW 419
           +   I+   L   ++L  I+   T  +          ++ + +   +   A   +    W
Sbjct: 333 IPWFIVLGGLATSMLLAGIVFSLTTARSRAQILANEMTRHLRTSERQLEEAQHLASLGSW 392

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D     +  + +   ILG  +G +   +   L  +   +R      +         R 
Sbjct: 393 ILDPETGALQCSEEARRILGFEAGHLRPELPALLSRVPAAERPAVEQQIAQA-SRSMERS 451

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           ++E  +   D    W+ +  +  +  +G  +   G   D T  +K           D L 
Sbjct: 452 EFEHHLCLPDGTERWLHVIAQS-AEEDGKTM-VRGTVRDATRPRK-----------DAL- 497

Query: 540 GIPNRQSFLDRLTTILDLSATDD 562
               RQ    R+  +L      +
Sbjct: 498 ----RQGLEYRIARLLAGDGRAE 516


>gi|22298454|ref|NP_681701.1| hypothetical protein tlr0911 [Thermosynechococcus elongatus BP-1]
 gi|22294634|dbj|BAC08463.1| tlr0911 [Thermosynechococcus elongatus BP-1]
          Length = 1240

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 142/569 (24%), Positives = 267/569 (46%), Gaps = 18/569 (3%)

Query: 393  TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                   +  + ER    +    ++++            P     L     +  G   ++
Sbjct: 677  RAELVSALHQEKERYRRVLEAQTELLYRCTPEGHLTFGNPAFFRYL-----AEAGMNCDF 731

Query: 453  LPYI-HIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               I H  D   +  F+  L   +   +     E  V  +  Q  W     R   + +G 
Sbjct: 732  GDVIRHPFDPVTQQRFQQHLQ-ALSPAQPISTIECAVTLSGGQLAWFEWTTRAFFDHHGR 790

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             + Y  +  DIT +K+  E ++ +A  D LTG+PNR    +RL           +    V
Sbjct: 791  CVEYQCVGRDITCRKQMEEQLIHDALHDALTGLPNRTLLQERLKHCWRQYQRRRDRPFAV 850

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            + IDID++K++ND LG   GD +L++L +R+  +++  D LARLSG+ F ++    +   
Sbjct: 851  VFIDIDRFKRVNDSLGHQAGDQLLITLAQRMQTVVRQGDTLARLSGDEFVVLCEDLDPQQ 910

Query: 629  KIADFAIA---MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
             +A        + + I  P+ +    ++V+ASIG A       +++ +L++A++AMY AK
Sbjct: 911  MVAQVQAQVTDLERVIQEPLIIDGHLLSVSASIGVAFSDREATSAATLLRDADIAMYQAK 970

Query: 686  HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             +G      F  ++ +       ++  L  A+ NSEL + + PI+ +    IVGLEAL +
Sbjct: 971  KQGLGQWCIFDPQMHTQAQSCFTLESQLHQAIANSELQVYFQPIVEMKTGAIVGLEALSR 1030

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIAS 802
            W  P+ G IS SEF+ +AE+  +I ++   +LER  ++   WR Q +    + + INI+ 
Sbjct: 1031 WFDPEKGEISPSEFITLAEQAGLIVSLGRQVLERAIQEFSQWRQQDSRRQTMTLGINISP 1090

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            + L+D      + A + +    P  + L  +E+ ++ N E +  +   L+++G++L +DD
Sbjct: 1091 QQLVDANFVSDILAALRRAQLPPHLLHLEITETTMIRNLEATLQVAEELQQLGVALNIDD 1150

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S LS L  +P   +K + S +     ++    I+ ++I + K++   ++A+ +  
Sbjct: 1151 FGTGYSSLSRLHQLPIHALKIDRSFVQSLEESQAAQEIIGAVIALGKSLRLDVVAEGVET 1210

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +   +L  +GC Y Q      PL  + +
Sbjct: 1211 AVQAAQLMDLGCLYGQGYFFYPPLPIDRL 1239



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 13/151 (8%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            L V  + D++   +   + +  TP   T+LG +   + G         H  D +  R+ 
Sbjct: 11  ELLVNYTDDLICLHETDGNYLYVTPSSQTLLGYSPEELIGKNPY--TLFHPEDAERIRSG 68

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +        L   +R+R     + W+     P+ +  G++L  +  + D+T +++   
Sbjct: 69  AHALALQGSANLTETYRMRKKSGGYVWLETLTHPICDEAGNVLFLVTTSRDVTRRRQLEL 128

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +             N++         L+  
Sbjct: 129 ELK-----------ANQELLEAFFQQSLEAC 148



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 13/198 (6%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIF 401
             L  + +    + + +   +          L      I+  F V + +         I 
Sbjct: 217 RALFDLGYFHTELELHRHDGSSFWIEGNYVCLYNENQEIIGHFGVQRDISDRIRLQAEIV 276

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                       S ++    D             T LG     + G    +  ++H  DR
Sbjct: 277 QKTAELEYFFGSSLELFMIADSEGRLRRVNHHWQTCLGYDLNRVMG--AKFEEFLHPGDR 334

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              R +    +   +    +  R+R     + W   +      S G I      A D+TE
Sbjct: 335 PRHRQMQQRLLAGEQIT-NHTIRLRTQGGDYRWYEWQG---LLSQGQIY---AAARDVTE 387

Query: 522 QKKSLEGILCNAFQDNLT 539
           Q++  + +   A  + +T
Sbjct: 388 QRQFSDRL--QAAYNQVT 403



 Score = 58.0 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                    A    L    + G   R W       D +  + +  +      G    E  
Sbjct: 177 RMTRVNNAFAQQYQLPPQELIGLTPRLWFK----EDLELAKRLWRALFD--LGYFHTELE 230

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +   D    W+      + N N +I+ + G+  DI+++ +    
Sbjct: 231 LHRHDGSSFWIEGNYVCLYNENQEIIGHFGVQRDISDRIRLQAE 274


>gi|71278809|ref|YP_269948.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144549|gb|AAZ25022.1| sensory box/GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea
            34H]
          Length = 1206

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 127/566 (22%), Positives = 245/566 (43%), Gaps = 16/566 (2%)

Query: 403  DGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIH 457
              E+  LA      +G+ +   D     +        I G +     G     L      
Sbjct: 641  AEEKIKLAASVFSHAGEGIIITDDKATIIDINDAFTNITGFSREEAIGKNPRILQSGRQT 700

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                 +    L        G    E   R  + + + ++  I  + + +G    Y+ + N
Sbjct: 701  PEFYADMWQAL-----QNEGYWSGEVWNRRKNGEVYAVMQTISAVRDVHGIATHYVSLGN 755

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DIT  K+    +   A  D LT +PNR    DRL+  +   +        V+ +D+D +K
Sbjct: 756  DITLMKEHQNQLEHIAHFDILTNLPNRVLLADRLSQAMLQCSRHKQ-SLAVVFLDLDGFK 814

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             +ND  G  +GD++L++L+ R+ E L+  D LAR+ G+ F  +L               +
Sbjct: 815  HVNDTHGHDIGDELLIALSVRMKEALRENDSLARIGGDEFVAVLADLTTVEDCEPVLERL 874

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              + + P+      + ++ASIG   +    + +  ++++A+ AMY AK  G N    F  
Sbjct: 875  LLAASEPVIFDNIVLNISASIGVTLYPQDNVGADLLMRHADQAMYVAKESGKNRYHLFDT 934

Query: 698  SSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +   + +V  +    +  A++N +  L Y P + +    + G+EALI+W HPK G ++  
Sbjct: 935  AQDDAVKVQRESLEAIRSALDNHQFVLHYQPKVNMRKGIVTGVEALIRWQHPKRGLLNPI 994

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            EF+ + E   M   +  ++++     I  W+      P+ I +NIA+  L   +  + + 
Sbjct: 995  EFLPVIENNPMSIEMGEWVIDTALTQISQWQKLGLNFPVSISVNIAALQLQQPDFTDRLM 1054

Query: 816  ALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L++      P  ++L   E+  + +      ++     +G++  LDDFGT  S L+YL 
Sbjct: 1055 ILLAAHPDVEPHYLELEVLETSALEDVYNVSTIMNACMALGVNFALDDFGTGYSSLTYLR 1114

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P + +K + S +         +AI+  +I +AK+ +  +IA+ +        L ++GC
Sbjct: 1115 RLPANLIKIDQSFVRDMLHDSDDLAIVEGVIALAKSFKRDVIAEGVETIEHGTALLQLGC 1174

Query: 933  DYIQDSHVASPLGFNSILKLLKERFP 958
            +  Q   +A P+  + I   + +  P
Sbjct: 1175 ELAQGYGIARPMPASEIPTWISDWKP 1200



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 1/161 (0%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              + +I    ++    +     +  + +  E+  L + G+    WDW+IV  RV     
Sbjct: 489 EANMTLIEQAASLASIAIEKIQANLALKASDEQMQLVLAGADLGFWDWNIVTGRVDRNER 548

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            AT+LG     +      W  ++H  DR+     ++  +  R      E+R+   +  + 
Sbjct: 549 WATMLGYTHKELKHSTNQWADFVHQEDREKAWQSINDVLEGRSKSHSLEYRMLTKEGGYR 608

Query: 494 WMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           W+  +   M  +SNG  LR  G  +DIT +K + E I   A
Sbjct: 609 WVHDQANVMQRHSNGKPLRMSGTHSDITNRKLAEEKIKLAA 649



 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 3/140 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ + S  ++    + G+    WDW           +  +ILGL+   +   I +W   I
Sbjct: 216 NENVNSSQKQLLNVINGAKLGYWDWCYQTGEHVVNDEWLSILGLSRQDITNHISDWDGLI 275

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIG 514
           H ND    +  + + +   +     EFR++ AD ++ W+      +       + +R  G
Sbjct: 276 HPNDDQFMKKTVQTHILSGKN-YVVEFRMKHADGRWVWIQGSGSVIEYDENTHEPVRLCG 334

Query: 515 IANDITEQKKSLEGILCNAF 534
              DIT +K +       + 
Sbjct: 335 THQDITVRKLAELREKSRSH 354


>gi|284992145|ref|YP_003410699.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284065390|gb|ADB76328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 718

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 142/652 (21%), Positives = 280/652 (42%), Gaps = 24/652 (3%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLI 378
                        +     L     ++       G        L +      +       
Sbjct: 69  VGRQVGAALVDAHFTNPQSLSQTLCVLLDGEPGGGAAPLREGVLPDRRWHALVAAVAEGF 128

Query: 379 VILIGFTVIQHVLA--------TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
              +    ++   A             + +    +R      G+   +   D+    +  
Sbjct: 129 SAALQERALREEEAILGAAAAAREQAREALHVSQQRFRAVFEGATIGIGIGDLEGRILEV 188

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            P +  +LG          R+   ++H  D ++   +    +   R   + E +   +D 
Sbjct: 189 NPALVRLLGHPVEDF--RRRSVQEFMHPADVEHVWRLYGELIRGERDHFRLEKQFLKSDG 246

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +  W  + +  + + +G     + + +D+T  +     +   A  D LTG+PNR++FL  
Sbjct: 247 ESVWTDLTVSLLRDGDGRPRYQLALIHDVTALRHLRRRLEFEAQHDALTGLPNRRTFLAH 306

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-L 609
           L  + D +      R  +  +D+D +K +ND LG  VGD +LV++ +R+  +++   + +
Sbjct: 307 LDAVFDQA--SPGARAGLCYLDLDGFKAVNDTLGHEVGDQLLVAVAQRLVSVVRDRGLSV 364

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F +++   + S ++   A  +  ++A P+ L  R + +TAS+G    + + I 
Sbjct: 365 ARLGGDEFVVLVPGTSGSGQLVALAEEVLAAVAQPVELGGRRVEITASVGVVERSIADID 424

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727
            +E+L+ A++ +Y AK  G +    F          R  +   L  A+    L + Y P+
Sbjct: 425 PAELLRAADMTLYWAKADGRSQWALFEPERDAREITRYRLSSALPAALAGEHLLVHYQPL 484

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            RL D  + G+EAL++W+HP+ G +    F+ +AEE  MI  +   +L    R   SW  
Sbjct: 485 RRLADGRLHGVEALVRWEHPRMGLLGPESFVGLAEESGMIVPLGRHVLRAACRQAFSWFG 544

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
             +  P ++ +N+AS+ L D  L + ++  +S +   P +++L  +ES V+G    +   
Sbjct: 545 AGSSGP-YVSVNLASRQLRDEHLVDDVRTALSDSGLHPQQLQLEITESAVLGTDPLTGHT 603

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRS 901
           L  L  +G+ L +DDFGT  S L++L  +P D +K +GS + G             ++ S
Sbjct: 604 LDALAGMGVRLAIDDFGTGYSNLAHLRRLPLDELKLDGSFLRGLRSDDAVDPVDVQLVGS 663

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           II +A  +  T+ A+ +  +  +  L  + CD  Q +++  P     + +LL
Sbjct: 664 IISLAHLLGLTVTAEGVETQAQVTILRELDCDAGQGTYLGRPAEPADLGRLL 715


>gi|13476460|ref|NP_108030.1| hypothetical protein mll7787 [Mesorhizobium loti MAFF303099]
 gi|14027221|dbj|BAB54175.1| mll7787 [Mesorhizobium loti MAFF303099]
          Length = 724

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 134/585 (22%), Positives = 255/585 (43%), Gaps = 30/585 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++ + +       Q +     R   A+      +  +D     +        +  + + 
Sbjct: 151 VSIYEDITEQRRAEQDLKEQHRRFDAALANMSQGLLMYDADGKMIVRNRRFLELYNVTAA 210

Query: 444 S--MHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
              +    R+ L  +         D D+     ++ +     ++   +R    D     +
Sbjct: 211 DFPLGTTHRDALEKLLEIGIYQQIDVDSEVAKTEACL--VVAKMHSAYRYLT-DG--RTV 265

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           ++  +PMS        ++   +D+TE++++ E ++  A  D LTG+PNR  F +RL   L
Sbjct: 266 LVTRQPMSGG-----GWVVTFDDVTERRRTEERMIHLAHHDTLTGLPNRSMFRERLDLAL 320

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSG 614
           + +A        +  +D+D++K IND  G   GD +L S+  R+   L    D++AR  G
Sbjct: 321 EDAAA---PPLAIFSLDLDRFKAINDTWGHPAGDWLLKSVAERLQRCLHNETDVVARFGG 377

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++  +          A  + ++IA       R++ +  S+G A +      +  +L
Sbjct: 378 DEFVVMQFNSKGIADAEKLAKRIVEAIAKQFRDKSRDMHIGISLGIAVFPQDGRDADTLL 437

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMD 732
           KNA+ A+Y AK  G N    F  +     +    ++ DL  A+   E  L + PI+ +  
Sbjct: 438 KNADTALYRAKSEGRNLYRFFEPAMDAIVQARRALEVDLDAALPRQEFDLDFQPIMNIAS 497

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            EI+G EAL++W  P  G ++   F+ +AEE  +I  +  + L +      SW      P
Sbjct: 498 GEIIGAEALMRWHSPARGTVAPDAFIPVAEETGLIVPLGEWALRKACAAAASWP-----P 552

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N+++  L        + + ++ +     +++L  +E+V+M   +     L +LR
Sbjct: 553 GLRIAVNVSAVQLKSGGFARSVISALAFSGVPAGQLELEITETVLMDESKAVLKTLRQLR 612

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911
            +GI + LDDFGT  S L+YL   P D +K + S +         AI+R+II +   +  
Sbjct: 613 DLGIRIALDDFGTGYSSLAYLRRFPVDKIKIDRSFIRDMGNRDTAAIVRTIIGLGNELGI 672

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + A+ +  E+ +  L   GC+  Q   +  P     I +LLK R
Sbjct: 673 VVTAEGVETEVQLDMLRDNGCEEAQGYLIGVPSKAADIQRLLKAR 717



 Score = 45.3 bits (106), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             ++     + V         +    ER S AV      +  +D     +    +   I 
Sbjct: 20  GSIVPERAAEGVERPRRMEDELREQNERFSAAVENMSHGLCMFDADERMIICNGNYINIF 79

Query: 439 GLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFH 493
            L +  +  P  +++  + H  D        D     R+  +       +    +D +  
Sbjct: 80  CLDAK-LVRPGIHFIDILRHSVDIGIASQSADELYAVRKPYIDQAKPSTYEETLSDGRII 138

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  R  P++     +  ++ I  DITEQ+++ + +   
Sbjct: 139 NISHR--PLA-----LGGWVSIYEDITEQRRAEQDLKEQ 170


>gi|89092959|ref|ZP_01165910.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
 gi|89082609|gb|EAR61830.1| PAS sensor diguanylate cyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
          Length = 948

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/573 (24%), Positives = 268/573 (46%), Gaps = 13/573 (2%)

Query: 391 LATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            A     + +  + ER  +   +  +  I+   D      T       +LG++       
Sbjct: 375 RAQNLTERSVQLEAERDLVTSLLDTAEAIIITQDDNGRVETLNRFGQQVLGISESE--AK 432

Query: 449 IRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           +  +L   H        R +L   +  +  ++Q E  +R+++ Q   +   +  + +  G
Sbjct: 433 MMGFLELNHETGSLPQHRQLLAHLIERKEHKVQMEASIRSSNGQMLQISW-LHSVLSVPG 491

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +R + I  D+TE+  + + ++  A  D LT +PNR  F +++   +      + +   
Sbjct: 492 GDIRVLTIGLDLTERMHAEKRLVWMANHDPLTALPNRLLFTEKVDEAIKRYQEKNGI-LA 550

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++  D+D +K +ND LG  VGD++L     RI  ++    +LARL G+ F ++L    N 
Sbjct: 551 ILFCDLDSFKDVNDSLGHPVGDELLQQAAERIQNIICNDGVLARLGGDEFTVLLEGRANI 610

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +I + A  + ++      +   EI  T SIG +         + ++++A++AM+ AK  
Sbjct: 611 REIENVAQHIIRAFRQSFFIDGYEIFSTISIGISLHPDHGDNVTSLIQHADVAMFDAKES 670

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  +       R +R  +  DL  A+E  E  + Y P I      ++G+EAL++W 
Sbjct: 671 GKNQLRFYHDEQGSQRYERFSLVNDLRRALEKDEFRIFYQPQIDTRTGNVMGVEALLRWQ 730

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           H + G IS ++F+ +AEE  +I  I  ++L    R    W DQ       I +NIA + +
Sbjct: 731 HSEAGMISPAKFIPLAEEQGLIVPIGEWVLRESCRMGKIWHDQG--MDFRIGVNIAGQQI 788

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +   L   +Q  + ++   P  + L  +E+ ++  PE +   L + R++G+SL++DDFGT
Sbjct: 789 MHESLMGTVQTALDESGIRPHLLDLEVTENFLLKQPEITIPKLHKFREMGLSLSMDDFGT 848

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P +T+K + S +       +  AI+++II +AK++    +A+ +     
Sbjct: 849 GFSSLSYLKKLPINTLKIDQSFVRDIGSDPEGEAIVKAIIVLAKSLGLEALAEGVETSEQ 908

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  L   GC  IQ  + + PL    +   +  +
Sbjct: 909 LSYLRTHGCHLIQGYYFSRPLPAEELPDFVMNQ 941


>gi|156932786|ref|YP_001436702.1| hypothetical protein ESA_00582 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531040|gb|ABU75866.1| hypothetical protein ESA_00582 [Cronobacter sakazakii ATCC BAA-894]
          Length = 839

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 145/612 (23%), Positives = 277/612 (45%), Gaps = 27/612 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-----------GIFSDGERQSLAVLGS 414
           ++   L+  L+    L+    +++ L     +             + +   R       +
Sbjct: 238 VVILPLLIFLMCFTGLVAGISMRNALNKARLNDENAFLLEQNRLALAASERRFRDVAEAT 297

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D +W+ D        +     I G       G            DR           G+
Sbjct: 298 TDWIWETDDELRFTWLSERFPVITGYRIADWLGRRVTEFIQ---EDRATLEAWFHQP-GH 353

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              R     R  +A     +  +  +P++   G +  + G A D+T + ++   +   + 
Sbjct: 354 GGHRNMTHCRYLSAQGHQRYCNLVAKPIATPEGGLS-FRGTATDVTLEVEAQARVQYLSL 412

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR    + L   L    T ++    ++ +D+DK+K +ND+ G  VGD++L  
Sbjct: 413 HDELTGLPNRVRMKEFLEGKLQSRPTREH-PLAMISLDLDKFKPVNDLFGHGVGDELLHQ 471

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+   L+  D++AR  G+ F +I+        +      +   +  P ++ + EI +
Sbjct: 472 VSERLRACLRDFDLVARQGGDEFILIIPDIERKEALEQLCARILAELNRPFSVQDHEILI 531

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
            AS+G A      + ++++L+ +++A+Y AK RG N    +          R  ++  L 
Sbjct: 532 GASMGIALAPQDAVNATDLLRFSDIALYKAKSRGRNGWVFYNADMAEQIVQRREMENSLR 591

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   +  LVY P   +  E++V +EAL++W HP  G +   +F+ +AEE  +I AI+ 
Sbjct: 592 EAIREQQFRLVYQPRYDVNAEKVVAVEALLRWYHPTLGLLMPDQFIPLAEETGLIIAISD 651

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    RD      Q +MP + + +NI++ +     L E +Q +++ T  +P R++L  
Sbjct: 652 WVLNAACRD-----AQRDMPGLSVSVNISAMEFRTPGLVERVQEVLNTTGLAPERLELEV 706

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E+  + NPE+S  L+  L+ +G+ L +DDFGT  S LSYL   PFD +K + S + G  
Sbjct: 707 TENATLSNPEQSLALMNGLKALGVRLLIDDFGTGYSSLSYLRTFPFDGIKLDKSFVAGMP 766

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            ++   +I+ +II + K    +I A+ +     + +L    CD  Q   +  PL    ++
Sbjct: 767 HSDNANSIVENIIGLGKAFSLSITAEGVETPEQLAQLKMYQCDETQGYLMCRPLPLERLI 826

Query: 951 KLLKER-FPLVK 961
             L+++  P  K
Sbjct: 827 AQLRKQGMPPAK 838


>gi|118478971|ref|YP_896122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|229185978|ref|ZP_04313149.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
 gi|118418196|gb|ABK86615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|228597530|gb|EEK55179.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
          Length = 909

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 311/725 (42%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + K +     + E  + +
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFKCMEKSFIIHEHTLNL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLYYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVTFLQKNKCQFIQGYYYSKPIHINAFT 900

Query: 951 KLLKE 955
           +LLK 
Sbjct: 901 ELLKS 905


>gi|304396817|ref|ZP_07378697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304355613|gb|EFM19980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 949

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/571 (24%), Positives = 259/571 (45%), Gaps = 23/571 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWDIVRDRVT-TTPDIATILGL 440
           Q +L     ++      ++ +L       +      V   D +   +         + GL
Sbjct: 384 QQILRARDLAEA--QSTQKTALSKFLDNIIANIPSCVIVEDAITREILLVNDRTQQLFGL 441

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   +     +    +     D F  + D  +    G  + E  +  A  +   +  R  
Sbjct: 442 SKSLIVNKRPH--ECMSPELSDYFNNLADVALRSE-GMHEREQLLMTASGERI-LHTRAT 497

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            ++  +      + +  D+T+Q+ +   I   A  DNLT +PNR  F  RL+  L  +  
Sbjct: 498 AINGQDARRNYLMLLVEDVTDQRAADARIHHMAHHDNLTSLPNRILFRQRLSEALRTAGQ 557

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  +  +D+D +K +ND LG  +GD++L S+ +R+   L+  D LAR+ G+ F I+
Sbjct: 558 MQRQTAALC-LDLDNFKNVNDALGHQIGDELLRSVAKRLRNALRDQDTLARIGGDEFAIV 616

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L     + + +  A  + ++I  P+N+    ++V  S+G A  T+   T  ++L+ A++A
Sbjct: 617 LPHVAGNDEASAVAQRLIEAIRPPVNIEGHNLSVGLSVGIALSTTITNTPEQLLRCADMA 676

Query: 681 MYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N  E F +        R +I+ DL  A+    L L Y PI       I+G 
Sbjct: 677 LYEAKRNGRNRYEHFTLEMDDVARSRRLIENDLRDAISGGHLRLYYQPITNGDHHTIIGY 736

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G I  ++F+ IAEE  +I  +  F L    R+  SW  +       + +
Sbjct: 737 EALMRWHHPIRGLIMPNDFIPIAEETGLIHMLGAFALYEACREAASWEGEQ-----SVSV 791

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++     ++ L   ++  + ++   P+R+++  +ESV++ +   +   L  L+ +G+ +
Sbjct: 792 NLSPLQFKNSSLVPVVEGALKESGLDPARLEVEITESVLLDDSLGNIRTLQNLKALGVQI 851

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL   PFD +K + S +    + R   AI+R+I  M+++++  I A+
Sbjct: 852 ALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMGDSREALAIIRAITGMSRSLDIQITAE 911

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  +    +L   GC   Q      P    
Sbjct: 912 GVESDEQFAKLRDEGCTLFQGFLFGRPQPSE 942



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 3/140 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                        +R  L V G  D  ++  D+    V          G  +  + G   
Sbjct: 250 EQQRIRSEQREQEQRFRLLVEGVTDYAIYMLDVDGVVVNWNAGAERAKGYKAEEVVGQHF 309

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +     H    +      +  +  + GR + E      D    W  + I  + + +G ++
Sbjct: 310 SLFYSSH-ERLNRTPEA-NLGIALKTGRFEDEGWRYRKDGSAFWAHVVIDAIHDDDGKLV 367

Query: 511 RYIGIANDITEQKKSLEGIL 530
            +  I  D TE+++  + IL
Sbjct: 368 GFAKITRDRTERREQEQQIL 387



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 5/173 (2%)

Query: 363 DNDIIQPALVGGLVLIVI-LIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGD-IVW 419
            +      ++  +   V  L+GF  I          Q    + E R  L V G  D  ++
Sbjct: 91  GSTFWAHVVIYPIRNEVARLVGFAAICRDCTRQQEQQHKEREQESRFRLLVEGVTDYAIY 150

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D   + V          G  +  + G   ++  +    DR N     +    YR GR 
Sbjct: 151 MLDHDGNVVNWNAGAQRAKGYVAEEIVGQ--HFSRFYSAQDRLNHVPEQNLQTAYRTGRF 208

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           + E      D    W  + I  + +  G +L Y  I  D TEQ++        
Sbjct: 209 EDEGWRYRKDGSAFWAHVVIDTIRDDQGQLLGYAKITRDCTEQQRIRSEQREQ 261



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 2/110 (1%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                 +       +LG     + G         +  DR   +   +  +    GR + E
Sbjct: 26  PDGTVASWNGGGLHVLGYRPDEIIGQHATLF--YNEEDRRRGQLQRELDIAANAGRFETE 83

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                 D    W  + I P+ N    ++ +  I  D T Q++        
Sbjct: 84  GWRCRKDGSTFWAHVVIYPIRNEVARLVGFAAICRDCTRQQEQQHKEREQ 133


>gi|254492620|ref|ZP_05105791.1| ammonium transporter, putative [Methylophaga thiooxidans DMS010]
 gi|224462141|gb|EEF78419.1| ammonium transporter, putative [Methylophaga thiooxydans DMS010]
          Length = 1000

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 159/793 (20%), Positives = 310/793 (39%), Gaps = 39/793 (4%)

Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEI-- 259
           + I  TI   +           +    +  + I  G L  LV++ +   L+    + +  
Sbjct: 210 VIILNTILAAIWGGISTTLLKYITDGYVDVLMIINGVLGGLVSVTANCHLVTPVEAMMIG 269

Query: 260 ALSSSLIIFLFMYLHWNRW-----HAKVGYITFSGIACIAILFC----MSFYYPMVTASI 310
            +   ++ +   +L   R         V             L      +           
Sbjct: 270 LMGGLIVFYGDRFLESKRIDDAIGVIPVHLFAGIWGTLAVALMGNTERLGSGLSWTEQLY 329

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
            +      +  Y++F  Y   +   R   L        I        ++  + + +    
Sbjct: 330 VQSLGIVTIGIYSFFTAYVLFRIINRFYPLRVNEQAELIGLNVAEHRVSTEVFDLLAAMQ 389

Query: 371 LVGGLVLIVILIGFT------------------VIQHVLATGYFSQGIFSDGERQSLAVL 412
                      +                     V   +               R+   + 
Sbjct: 390 HQQQKSDFSSRVPVEPFTEVGQIAQQYNRVIDKVNSEIEQRDQAFSAFKQSEFRKGAIMQ 449

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-- 470
            + D +   +   D +   P      G++  S+ G    +  +I    R      L+   
Sbjct: 450 AAMDCIVTINGRGDIIEFNPASEQCFGMSRKSVLGDNF-FTLFIAEESRSAAINSLNQGF 508

Query: 471 -FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                   +      +  +D       + I   +      + Y     DIT Q +  + +
Sbjct: 509 VAGDGMVLKRHNITELSRSDGVEFPAEVVITQTTLPTQSEIEYTLHIRDITRQIRLQDRL 568

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+ NR  F+  L   +     +      +M +D+D++KKIND LG   GD
Sbjct: 569 KQLAYNDPLTGLYNRTYFMSHLKQRIAYHQENLG-SVVLMFLDLDQFKKINDNLGHKAGD 627

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  +  R+ ++++  D++ R  G+ F I++       +    A  + K +  P+ L  
Sbjct: 628 QLLCEVASRLKQVMRELDLVGRWGGDEFVIVMSGNITLSQAEHKAEDILKVMRSPVKLDG 687

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMI 707
           + + V  SIG A   + +IT  ++++ A++AMY +K  G N    +   +S     +  +
Sbjct: 688 QTLVVPTSIGLAISENGQITPEQLMQQADMAMYRSKQSGRNTYRVYLEEMSEKTKQKFQL 747

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+  ++L L Y P + +M +E+VG EAL++W+HP+ G I   EF+ + +E  +I
Sbjct: 748 ENALPEAIVKNQLTLHYQPKVSVMTDEVVGFEALVRWNHPELGLIMPGEFIPLIDESNLI 807

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++++++   +  WR Q   P + + INI+   L  + L   +  L  +     + 
Sbjct: 808 IHLGEWVIQQVIEQLSRWR-QIGAPLLPVAINISGHHLHSDNLAGFVSKLTQRFDIDGAL 866

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++   +E V+ GN E+S   +  L+K  I L++DDFGT  S LSYL   P D +K + + 
Sbjct: 867 LEFEITEGVLTGNTEQSIAAMKALKKTNIRLSIDDFGTGYSSLSYLKKFPVDVLKIDQAF 926

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    S  +  AI ++II + K++   IIA+ +     +  L +  CD  Q  + + P+ 
Sbjct: 927 IRECQSKREDAAICKTIITLGKSLGLQIIAEGVETIEQLTFLKQHDCDIYQGYYFSRPIP 986

Query: 946 FNSILKLLKERFP 958
             +IL LL++R P
Sbjct: 987 AENILPLLEQRLP 999


>gi|313199791|ref|YP_004038449.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312439107|gb|ADQ83213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylovorus sp. MP688]
          Length = 1237

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 128/573 (22%), Positives = 264/573 (46%), Gaps = 12/573 (2%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             +        +          +  S D +  +D    R+     +          +    
Sbjct: 662  AIERHRSDTQLQERERELRSLLDNSPDTITRYDANCRRLYVNQRMLEYFDTTPDVVLHTT 721

Query: 450  RNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                P   + +      R      +  +    + E  ++A++ +     IR+ P  N +G
Sbjct: 722  PRDFPGGSVTVEYEARIRQAF---LTGQPD--ELELPLKASNGKLLVRHIRMMPEFNPDG 776

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +   + +  DITE  +  + I   AF D LT +PNR   L+++ + +  +A       +
Sbjct: 777  TVASVLAVGRDITEIVEYRQRIHDMAFYDALTRLPNRAMLLEQMRSGILAAAAGAQQVFS 836

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +MV+D+D++K+IN+ LG + GD +L     R+ + L+  D+LAR+ G+ F ++L   +  
Sbjct: 837  LMVLDLDRFKQINETLGHSTGDLLLCEAAARLQDHLREGDMLARMGGDEFVLLLRPGDAE 896

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             ++   A  + ++   P  +  RE+ V+ S+G A + +    +  +LK A+ AMYHAK +
Sbjct: 897  PELIAMAQTLIQAFRQPFLVAGRELFVSTSVGIARYPTDSQDADTLLKFADTAMYHAKAQ 956

Query: 688  GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G N+ + +  +        I+ +  +  A++  EL L Y P   L++  IVG+EAL++W+
Sbjct: 957  GRNNFQFYVSALTEVSSARIELETMMRRAIQQQELELYYQPQWDLLENRIVGVEALLRWN 1016

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
              + G +  + F+ +AEE  +I  +  ++L    +  + W       P+ I +N++++  
Sbjct: 1017 QTEHGLMMPNVFIPVAEETGLIIELGEWVLTMACKQAVQWNKDK-DEPLKIAVNLSTRQF 1075

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + N L   +  ++  T   P  IKL  +ES+++ +       L     +G+ +++DDFGT
Sbjct: 1076 IQNPLLASVTRILHDTGCRPEWIKLEITESLLLESNLDILNTLNAFDAMGLVISIDDFGT 1135

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S LSYL   P   +K + S +        +  +++++I +A  +   ++A+ +  ++ 
Sbjct: 1136 GYSALSYLNRFPVKQIKIDRSFVKDVPHDTHKSELVKAMISIAHVLNLDVVAEGVETQVQ 1195

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               L   GC  +Q      P+   ++  +L+E+
Sbjct: 1196 SDYLKASGCRAVQGYFYGRPMPLAALEAMLREQ 1228



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 73/259 (28%), Gaps = 40/259 (15%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +    +  ++A   +   +   D     +         LG     +     ++
Sbjct: 6   LVDAQKALADSKQLLAMAGDLARISMAIVDTDGRWLAANTPCCQQLGYEEAELLNT--SY 63

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +H  DR   +      +     +   E R +    +  W+     P+ + +  +L Y
Sbjct: 64  CDLVHPEDRRAEKLTWREVLAACCAQ-PLEHRFKHRSGRHVWLSTSFSPIRSQDNTLLFY 122

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    +IT++K   +                R      L  + + +   D          
Sbjct: 123 LLRIENITDRKLGEQH---------------RVLMNFALNQVSEAAYLLDEN-------- 159

Query: 573 IDKYKKINDVLGIAVG---DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            D+   +ND    A+G   +++L                + R          ++ +    
Sbjct: 160 -DRLTYVNDAACHALGYSREELLQ----------MEMGDIHRDGWPEITRTTLNNSAPHL 208

Query: 630 IADFAIAMRKSIAMPINLL 648
           +A+     +     P+ + 
Sbjct: 209 VAEAMHTRQDGSQFPVEIH 227



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 2/152 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +++ +       Q + S  +     V    D V  +D    RV   P    +L   +
Sbjct: 239 RLVMVRDIGDRKAAEQQLRSQEQLYHTLVDHLPDPVIRYDSEGKRVFLNPVAEALLQRPT 298

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIR 500
             + G     L       ++    +             +    + +D Q H   + +R+ 
Sbjct: 299 AELLGKTSLELNPASQALQEYVERVKHVVATGEASDFDFFMDRQPSDLQVHNKVIAVRMV 358

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           P  +  G I   + +  D++  K++       
Sbjct: 359 PERDPEGRIAGVLAVGRDVSMLKEAQRKFSSL 390



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/393 (13%), Positives = 121/393 (30%), Gaps = 45/393 (11%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R  +D+     V  + ++        I  VLA G     +     + S  +    D++  
Sbjct: 341 RQPSDLQVHNKVIAVRMVPERDPEGRIAGVLAVGRDVSMLKEAQRKFSSLLENIPDLIAR 400

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D+    +   P      G+ +  + G      P          ++I +         + 
Sbjct: 401 FDLQGRYLYVNPTFCETFGMKAADLIGQQGITWPGEAGQSAPILKSIQEVAQREEAITVT 460

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC-------NA 533
            +  +   + +  ++  R+ P S+  G ++  + +  D+T+ +                A
Sbjct: 461 LDVAL---NGKPSYLEWRLIPESDQQGRVISVLAVGRDMTQLRMHERLEQMRLLILESLA 517

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D  + +      LD +T  ++ +        ++M++D             + G  +L 
Sbjct: 518 HGDAFSSV------LDLVTRYMEQAK--PGFLCSIMLLD-------------STGTRLLC 556

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR--KSIAMPINLLERE 651
           +    +       + +A + G     I +   +    A     +        P     +E
Sbjct: 557 THAPSL-----PAEFVAAVDG---VTIGMGVGSCGTAAVLQERVLVDDIRTHPYWAPYKE 608

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-ED 710
           I + A++          ++  ML     A+Y  +  G    E        S  V I  E 
Sbjct: 609 IALAANLLACWSEPIFDSAHRMLGT--FAIYR-REAGSPSAEDLNFIHQASHLVAIAIER 665

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                +  E       ++    + I   +A  +
Sbjct: 666 HRSDTQLQERERELRSLLDNSPDTITRYDANCR 698


>gi|83310455|ref|YP_420719.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945296|dbj|BAE50160.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 916

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 152/665 (22%), Positives = 274/665 (41%), Gaps = 20/665 (3%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
            ++         +      + + ++VL +     +  ++   RA+L       I      
Sbjct: 257 FVVVVEQPLLSALKLPGGAVVIVTLVLLFGGVGAWVLVRYSRRAIL-----APIDALAEA 311

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
           +       +       +      L +     T              +    E+  L +  
Sbjct: 312 VRDVEAGDMSRRAPVESSDEIGALAMAFNSMTG-----RVAGLLNDLGESEEKFRLVMES 366

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFV 472
           + D +   D     V+       + G     + G   + L   H     D     L + +
Sbjct: 367 ASDALVVIDAEGKIVSWNGAATRMFGYQPAEIMGRNVSLLMPEHLRERHDQILARLRAKI 426

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R      E      D     + + +   S        Y GI  DI+ +K++   I   
Sbjct: 427 DARIRTDPREQPAMRQDGTLFPVEVTLAGFSFKGNR--FYSGIMRDISARKEAESNIRFL 484

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR    +RL  IL    T       ++ ID+D +K +NDVLG + GD +L
Sbjct: 485 ARHDALTGLANRVVLRERLDEIL--PQTGARQMHCLLFIDLDNFKLVNDVLGHSFGDRLL 542

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V +  R+  +    +I+ R  G+ F ++        + A+ A  +   +     +  + I
Sbjct: 543 VEVAGRLRSIEGGHNIVCRHGGDEFILLAPDIRTRERAAELAERVLAVMGDAFAIDAQAI 602

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKED 710
            V  SIG +        +  +++ A++AMY AK +G    + F   +     +R  +++ 
Sbjct: 603 EVGCSIGISVAPDDGTDAETLIRKADIAMYKAKEKGRLGYQFFTAAMDHQMVERRELEKS 662

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   + + E+++   P +RL D  + G EAL +W   + G +    F+ +AEE  ++ AI
Sbjct: 663 LRRGLRDGEIFIHLQPKVRLGDGGVTGFEALARWQSAEHGLVPPVRFIPLAEECGLVGAI 722

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L R    +  WR       + + +N+++  L +  L   + AL+ +    PS ++L
Sbjct: 723 GDVVLRRTLETLAGWRAAGRKV-LPVAVNLSAVQLGNPALAGEIGALLREFDLPPSLLEL 781

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++MG+ ++ R +L RL+  GI L++DDFGT  S LSYL   P D +K + S +T 
Sbjct: 782 ELTESMLMGDVDQVRAILFRLKDQGIRLSIDDFGTGYSSLSYLKRFPVDVLKIDRSFVTD 841

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +  A+  +II MAK +   +IA+ +  E     L R GCDY Q  H A P+  + 
Sbjct: 842 LPGDPEGEALCLAIIHMAKALSLDVIAEGVETEAQSLFLARHGCDYAQGFHFARPVPVDE 901

Query: 949 ILKLL 953
             + L
Sbjct: 902 AAEYL 906


>gi|78486270|ref|YP_392195.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
            XCL-2]
 gi|78364556|gb|ABB42521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thiomicrospira crunogena XCL-2]
          Length = 1289

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 135/561 (24%), Positives = 254/561 (45%), Gaps = 14/561 (2%)

Query: 401  FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                ER +LA      + + +   D     +        I G     + G   N L    
Sbjct: 722  RQAEERLNLAASVFTHAREGIMITDKHARILDVNKGFTQITGYEREEVLGLNPNILNS-G 780

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               ++ +  +  +      G    E   R  +   +  +I I  + NS+G    Y+ +  
Sbjct: 781  CQSKEFYNLMWKTLFEE--GHWSGEIWNRNKNGTVYPQMITITAIKNSDGMTQNYLALFT 838

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DIT  K+    +   A  D LT +PNR    DRL   +  S   ++L   V+ ID+D +K
Sbjct: 839  DITSLKEQQRQLEHIAHYDALTQLPNRSLLADRLQQAIFASQRHNSL-LAVLFIDLDGFK 897

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            K+ND+ G   GD++LV L++R+  +L+  D LAR+ G+ F ++L++ +           +
Sbjct: 898  KVNDLHGHDAGDELLVELSKRMKNILREEDTLARIGGDEFIVVLVNLDAPSDCEMILRRL 957

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +S +  +++    ++V+ASIG   +    + +  ++++A+ AMY AK  G N    F V
Sbjct: 958  LESTSESVDIEGEVVSVSASIGVTFYPKDNVDADLLMRHADQAMYQAKQSGKNRYHYFDV 1017

Query: 698  SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +    I+ ++  A+   E  L Y P + L    ++G+EALI+W+HPK G +   
Sbjct: 1018 QMDSMLQSQSAIQNEIQDALNKGEFELYYQPKVNLAQNIVIGVEALIRWNHPKKGLLVPI 1077

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            EF+   E       ++ +++E   + +  WR Q+    + I +N+++  L      + ++
Sbjct: 1078 EFLPFIENHPFSVELDQWVMETALKQMSEWRAQSLE--MSISVNVSAYFLQQKNFIQILE 1135

Query: 816  ALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L+S+        +++   E+  + N      L+   R +G++  LDDFGT  S L YL 
Sbjct: 1136 RLLSQYSDLPKFSLEIEVLETTALENISNISDLVHICRDMGVNFALDDFGTGYSSLMYLR 1195

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            ++P  T+K + S +          AI+  I+ +A      +IA+ +      + L  MGC
Sbjct: 1196 HLPARTIKIDKSFVRDMLVDMDDRAIIDGILKLASVFNREVIAEGVETVAHFEALLDMGC 1255

Query: 933  DYIQDSHVASPLGFNSILKLL 953
            + +Q   +A P+  + +   +
Sbjct: 1256 EQVQGYGIARPMPADQVSDWV 1276



 Score =  123 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 3/145 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + V A    S+ +    ER  L +  S    WDWDI  + +       T+LG    
Sbjct: 455 LFLARDVTARVQQSKELVEKDERLELILSASKIGQWDWDIESNVMLWDERSCTMLGYPPE 514

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +       W   +H +D       L + +  +      E+R+R+ D+ + W+  + + + 
Sbjct: 515 AFKMDYDKWASLLHPDD-AYVMKRLKAHLE-KGEAYSVEYRIRSGDDDWVWVESQGQTIE 572

Query: 504 -NSNGDILRYIGIANDITEQKKSLE 527
            ++ G  +R +GI  DIT++K+S +
Sbjct: 573 SDAKGRPIRMVGIYMDITDRKRSED 597



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 27/253 (10%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRD 426
           Q  ++   V    ++   +   +         +       +  +  S +  V   D    
Sbjct: 172 QSLILVLAVFTQAILILFLFYDISRRKQLQAELKQVATTLTNIMDSSTEVAVIATDTEGV 231

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG--------- 477
                     +LG ++  + G       +     +   + + ++     +G         
Sbjct: 232 ITEFNSGAEKLLGYSAQELVGKETPLKFHSEKEIQARAQRLSEALKRPVKGFQVFTEKLK 291

Query: 478 ---RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-----GI 529
                 +E+     D     + + + P+ + N   + Y+G+A D+TE ++S +       
Sbjct: 292 EDSPQDHEWTYARKDGVLVPVSLIVTPILDENHQKVGYLGVAQDVTELRRSQQALIEARN 351

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY--KKINDVLGIAV 587
              A  D +  +     F       +    T D  +   + +  +++  K++N+VL  +V
Sbjct: 352 QLEATLDTIPDL----LFEVDKEGCILNFHTADIEK---LYLKPEQFVGKRVNEVLPDSV 404

Query: 588 GDDVLVSLTRRIG 600
           GD +  ++   + 
Sbjct: 405 GDVIFQAMAEALE 417



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 6/137 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHI 458
           +  + ER           +   D     V        +LG+          +     I+ 
Sbjct: 599 LVENEERLRTIFEILPIGITLTDREGQIVECNSASEVLLGIPREEHLARKYDAKEWTIYR 658

Query: 459 NDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            D     +   + V     +  ++ +           W+ +   P+++ N      +   
Sbjct: 659 ADGTAMPSEEYAAVRSLTNQETIKNQVMKVCHSGDCTWLNVSATPLNHPN---YGVVVTY 715

Query: 517 NDITEQKKSLEGILCNA 533
            DI++++++ E +   A
Sbjct: 716 IDISDKRQAEERLNLAA 732



 Score = 44.9 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 49/154 (31%), Gaps = 10/154 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q V       Q +     +    +    D++++ D     +         L L   
Sbjct: 330 LGVAQDVTELRRSQQALIEARNQLEATLDTIPDLLFEVDKEGCILNFHTADIEKLYLKPE 389

Query: 444 SMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              G     +  +  +   D     +   +   R +   E+ + A + +     + +   
Sbjct: 390 QFVGKR---VNEVLPDSVGDVIFQAMAEALETGRSQ-GLEYSL-AQNGKQSCYELSVSTK 444

Query: 503 SNSNGDILRYIGIANDITEQ----KKSLEGILCN 532
            N   +++ ++ +A D+T +    K+ +E     
Sbjct: 445 INQKNEVVSFLFLARDVTARVQQSKELVEKDERL 478


>gi|192361938|ref|YP_001984117.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190688103|gb|ACE85781.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 856

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 133/569 (23%), Positives = 251/569 (44%), Gaps = 15/569 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A    ++ + +   +    +    D++++                +L +   +  G   +
Sbjct: 294 AVSEQTRELVNARAQLQATLDAIPDLLFEVGSDGIIYQFHTRRPELLLVPPEAFIGKAFS 353

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                  ++ +              G  + ++             + +   +     I R
Sbjct: 354 EFM---PDEVNQVIWSAMEEADA-TGFSEGKYYALEMPGGRRDFELSVASKAGKEKGIQR 409

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ ++ DITE+K++   I   AF D LT +PNR+   DRL   +            ++ I
Sbjct: 410 YVMLSRDITERKENEARINNLAFFDPLTQLPNRRLLQDRLEHAIATGQR-QAALGALLYI 468

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G  VGD +L+++  R+   L+  D + RL G+ F +IL   +N    A
Sbjct: 469 DLDDFKTLNDNRGHHVGDLLLIAVADRLRHSLRHEDTVGRLGGDEFLVILEGLSNDRDQA 528

Query: 632 DFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +      + +S+     L E+E   + SIG   +        ++LK A+ AMYHAK 
Sbjct: 529 AQQVQQIAEKILQSLNQVYVLDEQEYFNSPSIGICLFGDDDADIEDLLKRADQAMYHAKA 588

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N +  F      S      ++ ++  A+  ++  L Y P +      I G EALI+W
Sbjct: 589 AGRNTLRFFDPHMQASAAQRFALQNEIREALLFNQFKLYYQPQVD-RTGRITGAEALIRW 647

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS  +F+ IAEE  +I  +  ++L+   + +I W+       + + IN++++ 
Sbjct: 648 LHPERGMISPMDFIPIAEESGLILPLGNWILDAACQQLIHWKQNPLTAALTLSINVSARQ 707

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +    + A +++T  +P ++ L  +ES++  N +     +  L+  GI  +LDDFG
Sbjct: 708 FQQPDFVTQVLAAVTRTGANPHQLTLELTESILATNQQDIITKMDALKSHGIKFSLDDFG 767

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL  +P + +K + S +          AI R +I +A+++E  +IA+ +  + 
Sbjct: 768 TGYSSLSYLKRLPINELKIDKSFVNDILTDPNDAAIARMVIRLAQSMELNVIAEGVETQR 827

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
               L + GC + Q  +   P+G    L+
Sbjct: 828 QRDWLEQEGCLHYQGYYFGKPVGAEEFLR 856


>gi|89094748|ref|ZP_01167683.1| sensory box/GGDEF/EAL domain protein [Oceanospirillum sp. MED92]
 gi|89081002|gb|EAR60239.1| sensory box/GGDEF/EAL domain protein [Oceanospirillum sp. MED92]
          Length = 711

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/584 (25%), Positives = 265/584 (45%), Gaps = 24/584 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 +      ++ +  ++G+    +  D              + G+ +    G    
Sbjct: 132 ELHEAKKAFQETQQQLAQIIVGNPIASFVIDSRHVITHWNKACEVLTGIPAIEAIGTKDT 191

Query: 452 WLPYI-HI--------------NDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           W  +  H               +D + ++                 +F  +  D    W+
Sbjct: 192 WRGFYDHPRPVMANLVLQGALNDDIEQHYGKKFKPSELIPGAFEAQDFFPKMHDG--RWL 249

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                P+ +  G+ +  I    DITEQK+  + IL  A  D+LT +PNR   LDRL  +L
Sbjct: 250 YFTAAPLLDHQGNTIGAIETLQDITEQKEQEKKILHQAHFDSLTDLPNRFLALDRLN-LL 308

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
              A     +  V+ ID+D +KK+ND LG A+GD +L+  ++R+  +++  D + RL G+
Sbjct: 309 TKEARRTRKKLAVLFIDLDDFKKVNDTLGHALGDKLLIQASQRLKSVIRSSDTIGRLGGD 368

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F +I+ + + +L +   A  +  +      +  RE+ +T SIG + +       + +L+
Sbjct: 369 EFIVIINNLDEALDVRPIAEKLLDNFRDVFKVESRELLLTTSIGISIYPDDGEEPNVLLR 428

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ AMYH+K++G N    F          R+ I+E +  A+  +E  L Y P++ L + 
Sbjct: 429 NADSAMYHSKNQGRNAYHFFTEDMNAGVQRRLQIEEQMHSALGRNEFSLRYQPVLDLKNN 488

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EAL++W +P  GNIS  EF+ IAE+  +I  I  F+LE+  +    W    +   
Sbjct: 489 RIAGAEALLRWHNPVLGNISPEEFIPIAEQTGLIVPIGYFVLEQSLKAARKWSTTYSNE- 547

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N++     D +L   ++ L++      + + L  +E V++GN  + +     L  
Sbjct: 548 FTIAVNLSPLQFKDPKLIVKIKELLASHRLEGNALSLEITEGVLLGNQIKVQEAFQELSD 607

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
            GI +++DDFGT  S L+YL    F T+K + S M      +   A++ + I MA  ++ 
Sbjct: 608 SGIQISMDDFGTGYSSLNYLREYKFQTLKIDRSFMQDFALDKSAPALINATIAMAHALDV 667

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +IA+ +  +  +  L R GC++ Q   ++ PL        L +
Sbjct: 668 EVIAEGVEEQEQLDYLIRKGCNFAQGYLLSKPLTEQDFEAFLND 711



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 2/132 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +  + ER S     S D  W+ D     V  +      +        G  R W   I  
Sbjct: 12  ELEIEIERLSDFAELSSDWFWEQDRKFRFVAFSGTGLNRINRQQSDFIGRCR-WEMPICP 70

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +     +    +          +++     D +     +   P+ + +G    Y G   +
Sbjct: 71  SSFAAMKEH-KACCERHAPFFDFQYDNYGRDGKVQRFAVSGSPIYDESGQFKGYRGTGKN 129

Query: 519 ITEQKKSLEGIL 530
           ITE  ++ +   
Sbjct: 130 ITELHEAKKAFQ 141


>gi|228942821|ref|ZP_04105341.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976164|ref|ZP_04136655.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228783554|gb|EEM31642.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228816851|gb|EEM62956.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 828

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 165/760 (21%), Positives = 308/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA---------SIARITLASI 318
           +L+ YL  +     V  +       +  +   +     V++            +  L   
Sbjct: 137 YLYFYLQDDLSDRSVILLRCLYRVFLLCIAIAATISKNVSSKRNYFIINPIFGKKLLVIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NNQLEQTVSQRTKDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQSGSMLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 311 GEESAALIGQEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDIHFWY-VT 367

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +  +
Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRTFFQQELDRFIKRA 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG +VGD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKSQD-KFGLLYIDLNRFKTINDTLGHSVGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    +T SIG A +    I ++ +L++A+
Sbjct: 486 IIVHNQT-EQQLFDLCETLFRITEEPFVVNQHSFYLTLSIGIAVYPFGGINTTTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +      ++
Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPNALENNELFLLYQPQVDSKTGMVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + +
Sbjct: 605 GAEALIRWKHPELGIISPFEFIPIAEETSQIISIGQWTLQEACRQLKEWHSA-GYANLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +       + + + I +     S I L  +E + M + + +   L  L+  G+
Sbjct: 664 GINLSAIEFEQKGFVQTIISTIEEVGLPASSIDLELTERIAMVDEKETLSKLKALKSYGV 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGNEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 823


>gi|50812223|ref|YP_054577.1| sensor protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633696|emb|CAB13199.1| putative sensor protein [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 749

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 152/765 (19%), Positives = 293/765 (38%), Gaps = 61/765 (7%)

Query: 234 IDFGFLSKLV------NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           + FG  S         ++       +        +S    F+ +Y   +R       +  
Sbjct: 1   MGFGIWSMHFVGMMAVHMEMPMEYEFMPLMAAIGASVSGSFVSLYF-VSRHILTYYRLLT 59

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY-----------HGMKGYER 336
             +   A +  M +      + +  I    +        I              +K +  
Sbjct: 60  GSVVLGASIASMHYIGMSAISRVMIIYEPILFTVSIIIAIAASFVSLKIFFDLAVKKHSE 119

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDII---------QPALVGGLVLIVILIGFTVI 387
            ++       I +      M  T  L                       + V LI F + 
Sbjct: 120 HLIFYKGVSSIVMGIGISGMHYTGMLAATFHKDMAPPGSHMEVQTFHWSIFVTLIIFCIQ 179

Query: 388 QHVLATGYFSQGIFSDGER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-- 437
             +L + +  +      ER        QSL V    D ++   +  D +++      +  
Sbjct: 180 TLLLFSSHADRKFIKQSERIKDNEQRFQSLIVHNI-DAIFILSLEGDIISSNHAGEEMIS 238

Query: 438 -LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G +                       + + +     ++  +  +  +     Q   + 
Sbjct: 239 KFGFSMHDWRNYTSL-----------KVKRLFEQVKKDKQA-MNSDSDLITEKGQ-FHLN 285

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           I + P+   N ++     I  D+T+Q K+ + I   A  D+LT +PNR+  +  LT +L+
Sbjct: 286 ITLIPV-EVNQELDSIYVICKDMTKQYKAEKEIHRMAHYDSLTDLPNRRHAISHLTKVLN 344

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +    V  +D++++K IND LG  VGD +L    +R+  ++     +ARL G+ 
Sbjct: 345 R-EHSLHYNTVVFFLDLNRFKVINDALGHNVGDQLLQFAAKRLSSVVPDNGFIARLGGDE 403

Query: 617 FGIILIS-ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           F IIL      + +    A  + +    P  + +  +  + SIG A          E++K
Sbjct: 404 FIIILTDANTGTGEADVLARKIIQKFKKPFKIQDHTLVTSVSIGIAISPKDGTDGLELMK 463

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733
            A++AMY AK R  +    +  S    + V + ++  L  A+EN    L Y P   +  +
Sbjct: 464 KADMAMYAAKERNKSKYRYYSFSIGNKETVKLNQEMVLREAIENDRFVLHYQPQFSVKKQ 523

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           ++ G EALI+   P        EF+ +AEE  +I  I  ++++   +    W D+     
Sbjct: 524 KMTGAEALIRLVTPDGQLRPPGEFIGVAEETGLIIDIGKWIIDEACKQARIWHDKGYD-- 581

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + INI+++     +L   ++  ++K    P  +++  +ES+ M N   S+ +L  L +
Sbjct: 582 LSVAINISARQFQSKDLIPLIKDTLNKYQLPPQLLEVEVTESMTMDNLNHSKKVLSSLTE 641

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +GI +++DDFGT  S LSYL   P   +K + S +       K   I  +II M   +  
Sbjct: 642 LGIRISIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSL 701

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +IA+ +      + L   GCD++Q    + P+      + + E+
Sbjct: 702 QVIAEGVENAAQKQLLFEKGCDHLQGFFFSRPIPPEQFEQFIIEQ 746


>gi|326317200|ref|YP_004234872.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374036|gb|ADX46305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1040

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 125/591 (21%), Positives = 237/591 (40%), Gaps = 25/591 (4%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               V+Q +               R    +      V                  I    +
Sbjct: 449  HIAVVQDISDRKQMEAAQRDSEARLRQILYRLPVGVCLVARDGTLSFRNERFEQI-CRHA 507

Query: 443  GSMHGPIRNWLPYIHIN--DRDNFRTILDSF----VGYRRGRLQYEFRVRAADNQFHWMI 496
             ++   +R W   +  +   R+      D+               E+ +   D     + 
Sbjct: 508  DAVPSTVREWWEAVQPDALRREQAMADWDAACTAARAGDGTLPSREYAITCGDGSVRTVD 567

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            +    +  +       +    D+++ K + E I   A+ D LT +PNR+  +DRL   L 
Sbjct: 568  MAGVLLDGA------CLITMVDLSQHKAAEEEIHYLAYYDPLTQLPNRRLLVDRLQQALA 621

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             S         V+++D+D +K +N+  G   GD +L  + +R+   ++  D +AR  G+ 
Sbjct: 622  ASVRRGRC-GAVLMLDLDNFKTLNETQGHERGDMLLRQVAQRLRGCVQNEDTVARHGGDE 680

Query: 617  FGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            F ++L          + +  +    +  ++  P  L       T S+G   +  ++ T  
Sbjct: 681  FVVVLEDLGQSPQGAAARAEEMGQKILAAMRHPFMLEGEAHHTTLSMGVTVFQGARETVD 740

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            E+L+  +LAMY AK  G N +  +      S      ++ DL   +   E  L Y P + 
Sbjct: 741  ELLQRTDLAMYQAKASGRNALRFYDPQMQASVAARAALETDLRDGLGRGEFELFYQPQVH 800

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                 IVG EAL++W HP  G +S  EF+ +AEE  +I  +  ++L      +  W    
Sbjct: 801  H--GHIVGAEALLRWRHPARGFVSPGEFIPLAEETGLILPLGEWVLRAACERLAQWSRHP 858

Query: 790  NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             +  I + +N++++          + A ++ T     R+KL  +ES++  + E +   + 
Sbjct: 859  VLSQISLSVNVSARQFHQGGFVGQVLAALAGTGAEGRRLKLEMTESLLQQDLEDTIQKMQ 918

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
            +LR  G+  +LDDFGT  S L+YL  +P D +K + S +    +     +I R+I+ +  
Sbjct: 919  QLRAYGVGFSLDDFGTGYSSLAYLKRLPLDELKIDQSFVRDVLTDPNDASIARTIVALGT 978

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            ++   +IA+ +  E     L R  C   Q   ++ P+  +    L+    P
Sbjct: 979  SLGLRVIAEGVETEAQRVFLERNHCHAWQGYLLSRPVSADDFEHLVLSFPP 1029



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 407 QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                  +   V   D    R V        ILG     +           H +D+    
Sbjct: 345 FQTLFDQAAVGVAQVDTATRRFVRANARFCQILGYEPQELL--ALTVRDVTHQDDQAETE 402

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            ++D      +   +YE R R  D Q  W  +R+ PM N      ++I +  DI+++K+ 
Sbjct: 403 AVIDRLAAGGQQEYRYEKRYRRKDGQMVWAELRLAPMRNDRRQPAQHIAVVQDISDRKQM 462

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                  A +D+            RL  IL  
Sbjct: 463 EA-----AQRDS----------EARLRQILYR 479


>gi|212639170|ref|YP_002315690.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus
           flavithermus WK1]
 gi|212560650|gb|ACJ33705.1| Multidomain signal transduction protein (contains PAS, GGDEF and
           EAL domains) [Anoxybacillus flavithermus WK1]
          Length = 641

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 145/546 (26%), Positives = 252/546 (46%), Gaps = 16/546 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           + +  +      +    +P    +L  A             ++H +D       L +   
Sbjct: 103 ASEFTFILSSEGEITYVSPSAQHVLKCAEE---VCNHELFSFVHHDDIPLLMEKLHTIYA 159

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +      E R R     F WM +  +P+ N   +I   I +A DIT+ K   E ++   
Sbjct: 160 TKEKETTVECRWRTHKGHFIWMDMHAQPLLNEKNEIEHVIVVAKDITKWKCCEEELIKLK 219

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LT IPNR  F       ++           +  ID DK K IND      GD  L 
Sbjct: 220 HFDSLTNIPNRFYFETYAQHRIEKMR-----PFALCYIDFDKIKWINDRFTYQAGDFFLQ 274

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              RRI + L+  D  AR+ G+ F I+L   N    +A     + +S   P    E  I 
Sbjct: 275 EAVRRIQQHLQQEDFFARIGGDEFVIVLHDVNKETMVARMEHFL-QSFVEPFRYKEHVIQ 333

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
              SIG   +         +LK A+ A+++AK RG  +       + +    MI+++L L
Sbjct: 334 SGLSIGVTFFPQDGTDLDTLLKQADQALFYAKERGKGYHFYHPQQNRK---RMIEQELPL 390

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+ N++ YL Y P + L ++ I+G+EAL++W HP  G IS  EF+ IAE+   I  I  +
Sbjct: 391 ALLNNQFYLCYQPKVSLDNKSIMGVEALMRWTHPTLGAISPLEFISIAEKNGFIFEITTW 450

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+   R +  WR     P + + +N++   L   E    ++ ++ +T + P+ + L  +
Sbjct: 451 VLKEACRQVKQWRTHF--PTLKLAVNLSPFLLNRKEFVTHVKNILQETQFPPNYLILEIT 508

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES +M N E  + +L  L++IGI + +DDFGT  S L+Y+  +P   +K + S +   T+
Sbjct: 509 ESGLMENIETGKHILTELQQIGIQVAIDDFGTGFSSLAYIRNLPVSLLKIDRSFIRDITD 568

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 I+ +II +AK+++  ++A+ +  +  +  L +M CD+ Q  + +  L    +L+
Sbjct: 569 NSKDATIVDTIIHLAKSLDLQVLAEGVERDDQVSLLQKMDCDFAQGFYFSQSLEAEKLLQ 628

Query: 952 LLKERF 957
            L++  
Sbjct: 629 WLEQHN 634


>gi|115524099|ref|YP_781010.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518046|gb|ABJ06030.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 928

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 151/632 (23%), Positives = 272/632 (43%), Gaps = 43/632 (6%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFT---------VIQHVLATGYFSQGIFS- 402
                    L   I+ P   G L  ++ L+             I+H+      SQ +   
Sbjct: 313 LAERIAAGDLSARILPPFPKGELGNLMSLLNGAADSIQTQRRDIEHLNIRLLQSQQLEKT 372

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-----PIRNWLPYIH 457
           + ER  +A+      +  +D     V        + GL+   +        +  +   I 
Sbjct: 373 ERERLDIAISNITRGLLMYDADGRLVVCNRQYIEMHGLSPEVVKPGLPFCDLMAYRKQIG 432

Query: 458 I--NDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               D + F + +       +  R   E      D     +    +P+         ++ 
Sbjct: 433 SFDGDVEEFCSSIRRNLADGKISRYLLE----TGDG--RSIESVTKPLPTG-----GWLV 481

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D+T+++   E I   A  D LT +PNR  F +RL + LD  A + + +  V  IDID
Sbjct: 482 MTEDVTQRRLYDERIAHMAHYDALTDLPNRVLFHERLESALD--AREPDDQLAVFYIDID 539

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG ++GD++L  +  R+   L   D  AR+ G+ F II  +   +    D  
Sbjct: 540 QFKSVNDSLGHSIGDELLKIVADRLRGCLAATDFAARIGGDEFAIIQTAVAKATDTTDLV 599

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  +I  P +     +T  ASIG A          ++LKNA+LAMY AK  G      
Sbjct: 600 ERIYAAIRKPYDCAGHLLTADASIGIALAPQHGANLDQLLKNADLAMYGAKAEGRRTYRF 659

Query: 695 FRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +          ++ DL  A+ +    + Y P +RL D+++ G EAL++W HP  G I
Sbjct: 660 FEPAMEARVIALRTMEIDLRQAIADGGFEIYYQPQLRLCDDKVTGCEALLRWRHPVRGMI 719

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ +AEE  +I  +  ++L     + + W        + + +N++           
Sbjct: 720 SPAEFIPVAEETGLINQLGEWVLVESCAEAVKWP-----GDVKVSVNVSPVQFGSEGFAL 774

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A ++ +     R++L  +E+V++ + E +  +L ++R +G+ + LDDFGT  S LSY
Sbjct: 775 KVAAALANSGLPAHRLELEITEAVLIRDDEAALTMLHQIRALGVGIALDDFGTGYSSLSY 834

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K + S +    +      I+++++ +A     T  A+ +  E  + EL R+
Sbjct: 835 LRRFPFDKIKIDRSFIKNIEDANGSAHIVKAVVDIAAAQRMTTTAEGVETEGQLNELRRL 894

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           GC  +Q    + P+  + +  LL    P  + 
Sbjct: 895 GCSEMQGYLYSPPVPASKLAALL---LPPDRR 923


>gi|119485663|ref|ZP_01619938.1| hypothetical protein L8106_24810 [Lyngbya sp. PCC 8106]
 gi|119456988|gb|EAW38115.1| hypothetical protein L8106_24810 [Lyngbya sp. PCC 8106]
          Length = 872

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 228/439 (51%), Gaps = 6/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            QK+    I   A  D LT +PNR  F ++L   L  S     L   V  +D+D++K +N
Sbjct: 423 AQKRVESIIRYQACHDALTHLPNRLLFDEQLALALANSKQQPEL-LGVAFLDLDRFKVVN 481

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  +  R+ + L+  D +AR  G+ F ++     ++ +I   A  +   
Sbjct: 482 DTLGHGIGDQLLQQVATRLKQCLRNCDTIARWGGDEFTLLFPHLTSTDEITKIAHRILDK 541

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +++P  +  +E+ VTAS+G A        +  +LK+A+ AMY AK +G N+ + F     
Sbjct: 542 LSIPFVIDNQELYVTASLGIALCPYDAEDAQTLLKHADAAMYRAKKQGRNNFQVFAEEMH 601

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R   +++ ++ DL  A+   E  L Y P + +   +IVGLEALI+W HP  G +   +F+
Sbjct: 602 REALNQLTLEADLRRALIKEEFLLYYQPQVEISTGKIVGLEALIRWQHPTLGFVPPDQFI 661

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE+ +I  I  ++L+       SW+ +   PP+ I +N++++    ++L   +   +
Sbjct: 662 PLAEEIGLIAPIGQWVLQTACIQHQSWQAEGL-PPVRIAVNLSARQFHQSQLINIILQTL 720

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P  ++L  +ES  M + E +   L  LR++G+ +T+DDFGT  S L+ L + P 
Sbjct: 721 ETTEIDPQYLELEITESAAMQDVEFTIQTLQELREMGLHITIDDFGTGYSSLNVLKHFPL 780

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + S +       +  AI ++I+ +++ ++  ++A+ +     +  L  + CD  Q
Sbjct: 781 NTLKIDRSFVQDIVENSRDAAIAQTIVALSQGLKLKVVAEGVETPQQLSFLRSIHCDLAQ 840

Query: 937 DSHVASPLGFNSILKLLKE 955
             +   P+    I KLL++
Sbjct: 841 GYYFCPPVPAIEIAKLLRQ 859


>gi|187924609|ref|YP_001896251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phytofirmans PsJN]
 gi|187715803|gb|ACD17027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phytofirmans PsJN]
          Length = 768

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 143/615 (23%), Positives = 264/615 (42%), Gaps = 19/615 (3%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             +    A+  R+      P      +L  I     +  H        Q +    E   L
Sbjct: 151 GVVLGAFAVYYRVPRR---PGAEEEAMLRDIGHSVGLAVH---QDTMVQRLAHSEEHHRL 204

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    + +         +   P    IL      +   I   +   +  D         
Sbjct: 205 VVDHLIEGIVVQSRDGVVLACNPSAQRILRATPQIVGRSIHTVMVRAYHEDGSLVVDAAR 264

Query: 470 ---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKS 525
                +   +  L     V        W+   + P+      +    +    DI   +++
Sbjct: 265 PTAQVLSTGKPVLGVTIGVELIGGDIVWITENVVPIIKPGESEPGSVLISFTDIGPVREA 324

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILD---LSATDDNLRPTVMVIDIDKYKKINDV 582
              +   A +D+LTG+ NR    +R+  +      S   +     V+ +D+D +KK+ND 
Sbjct: 325 QRQLKFLATRDSLTGLYNRAYLTERMRDLFTPHMSSGMGELASVAVLFVDLDGFKKVNDT 384

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD +L S+  R+   +   D LAR+ G+ F I++ +  NS  +   A  +   IA
Sbjct: 385 AGHEAGDSLLCSVAERLSACIAPEDTLARVGGDEFVIVISAYENSGHLIGLARRVLDMIA 444

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +P  + + E  + ASIG + +       + +++NA+ AMYHAK RG N+ + F     + 
Sbjct: 445 VPFAVADNEYYLGASIGISRFPEDGQDVATLMRNADSAMYHAKQRGRNNFQFFTAELNQH 504

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +    I++ L  A+  +EL LVY PI+   D   +G EAL++W + + GN+S  EF+ +
Sbjct: 505 LQRRFTIEQSLRRALAGNELSLVYQPIVDSHDGRTIGAEALLRWYNSELGNVSPGEFIPV 564

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  I  F+L R    +  WR     P + + +N++ +   D  L E ++  +++
Sbjct: 565 AEDAGLIVEIGDFVLARACEQVAQWRRTLA-PELIVAVNLSPRQFND-GLVERIERCLAQ 622

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P+ ++L  +E ++M + E    +L  L  +G+ +++DDFGT  S LSYL   P   
Sbjct: 623 SGLEPTALELEITERLLMSDSETVLPMLSALNAMGVRISVDDFGTGYSSLSYLKRFPLHN 682

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S + G       IAI ++++ MA ++   + A+ +        L  + CD  Q  
Sbjct: 683 LKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQAAFLRAIDCDKQQGY 742

Query: 939 HVASPLGFNSILKLL 953
             + P+G ++  + L
Sbjct: 743 LYSRPVGASAYARAL 757


>gi|83313420|ref|YP_423684.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82948261|dbj|BAE53125.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 893

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 136/620 (21%), Positives = 278/620 (44%), Gaps = 13/620 (2%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
               +      +   ++  +          + L    +   + + +         +    
Sbjct: 262 AGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRLFIGIGRDITERKLTEAALRESE 321

Query: 405 ERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           ER          +V+  ++  D        +     ILGL    +    + +L  I  ++
Sbjct: 322 ERLRAIAANVPGMVFQRELHPDGSLCFSYVSEGCRAILGLGPEQLIDNPQLFLSLIPEDE 381

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R  F   L             E  V  +D +  W+  + RP    +G+++ + G+  D+T
Sbjct: 382 RSGFYAGLGRS-ARSMEPFDEEMAVPGSDGRRRWLRGQSRPTLRGDGNVV-WDGVMLDVT 439

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K + + +   A+ D LT +PNR +FL+R     +++A D      V+ + +D+   IN
Sbjct: 440 DSKHAEQRLSFLAYFDPLTRLPNRTAFLERFAAAREIAARDQ-TMLAVVSVGLDRLGIIN 498

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             +G ++GD VL++    +   L   D++AR SG+RF +++    +  +  +    +R S
Sbjct: 499 ATMGHSIGDQVLMAAGDLLRAALSSNDVIARTSGDRFLVLITGLGSKREAMEALERLRAS 558

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
               +    ++  V+A++G A +      +  ++KNA+ A+  AK +G   ++ F     
Sbjct: 559 AHATVAAAGQDFDVSAAMGAAVYPRDGDDAETLIKNADAALQLAKVQGPATLQVFTKEIS 618

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +  + ++  L  A++  EL   Y P + L + ++VG+EAL++W+ P  G +S ++F+
Sbjct: 619 ARAAKTLSLQTRLRRAIDQGELIAHYQPQVDLRNGDVVGMEALVRWNSPDLGMVSPADFI 678

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817
            +AEE  +I  +  FML    R    W+D+   PPI + +N++ +       L    +  
Sbjct: 679 PVAEESGLIDGVCEFMLWECTRQNKQWQDEGL-PPIPVAVNVSGRQFQYARRLLSACERA 737

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         +++  +ES  M + + +  ++ +L+++GI+ ++DDFGT  S LS L   P
Sbjct: 738 LVDNRLDSRWLEVELTESSAMRDADNAIAVVNQLKEMGIACSIDDFGTGYSSLSVLKRFP 797

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +    +     AI+ +II MAK +   ++A+ +  +  +  L  +GCD +
Sbjct: 798 ISKLKIDRSFVLDVTTDPNDAAIVDAIIAMAKALRLKVVAEGVEHQEHLDFLRNLGCDQM 857

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + PL  + +  LL E
Sbjct: 858 QGYFFSRPLPADGMRALLAE 877



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +P I ++LG A  SM    +  L  +H  DRD     +           + EFR  +A
Sbjct: 100 WFSPSIRSVLGFAVESMGVNSQGCLHAVHWADRDTHLAEIRRSAAQM-DTCREEFRAISA 158

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNL 538
             +  W+     P    +G ++ + G+  D+T+ +++   +        D+L
Sbjct: 159 HGEVRWLKGASEPRRQEDGSVI-WDGVMVDVTDGRRAELRLEMLMDHAGDSL 209



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHI 458
                R  + +  +GD +          +       + G AS  + G     L    +H+
Sbjct: 192 RRAELRLEMLMDHAGDSLIVVGSDGTIDSVNAAAEALFGWASSELVGKPFTTLLPQSLHL 251

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D        +   G   G    E      D     + +    +      +  +IGI  D
Sbjct: 252 DD---LLESAEVSAGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRL--FIGIGRD 306

Query: 519 ITEQK 523
           ITE+K
Sbjct: 307 ITERK 311


>gi|297199917|ref|ZP_06917314.1| sensory box/GGDEF family protein [Streptomyces sviceus ATCC 29083]
 gi|197710383|gb|EDY54417.1| sensory box/GGDEF family protein [Streptomyces sviceus ATCC 29083]
          Length = 631

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/553 (24%), Positives = 256/553 (46%), Gaps = 23/553 (4%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     V   P    +LG  S  + G     L  +  +            +  R+ +L+ 
Sbjct: 77  DREGTVVDANPAFGELLGATSEELTGTPAADLVDLASD--TRTWHAYREVLRGRQAKLRC 134

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           + R++  D    W  I + P++         +    DIT +++    +      D +T +
Sbjct: 135 KRRLKHPDGHSMWAQITVTPLAGDAHGSPGVLLSVADITARRELQARLRHLQMHDPVTRL 194

Query: 542 PNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           PNR  F +RLT  L+          R  +  +D+D ++ +ND LG  VGD +L ++  R+
Sbjct: 195 PNRTLFFERLTAALEPESYEQGGTGRIGLCYLDLDGFQAVNDTLGHRVGDRLLAAVAERL 254

Query: 600 GELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                          ++ARL G+ F +++     + ++AD A ++ K+I  P +L    +
Sbjct: 255 TRCADEAGHDRATAPLVARLGGDEFALLVEDSTGTEQLADLAESLLKAIQAPFDLSGHRM 314

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710
           +V+ASIG     ++  +++ +++ A+  +Y AK  G +    F             +   
Sbjct: 315 SVSASIGVVERRAAGTSATGLMQAADTTLYWAKADGRDRWTLFDPERNAHRMTRQALAST 374

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  E  L Y P++ + D  + G+EALI+WDHP++G ++ + F+ +AEE   I  +
Sbjct: 375 LRPAIERGEFRLEYQPLVCMEDGRLRGVEALIRWDHPQFGMLTPNRFIQLAEEDGSIVPL 434

Query: 771 NLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L    R    W+ D  + PPIF+ +N+A + + D++L   +   +++T  +P  ++
Sbjct: 435 GRWILATACRQARQWQLDHPDEPPIFVSVNVAVRQVWDSDLVADVAETLAETGLAPHLLQ 494

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES VMG+  R    L  L  +G+ + +DDFGT  S L+YL  +P   +K +GS + 
Sbjct: 495 LELTESAVMGSAGRPLQALQALSDMGVGIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVR 554

Query: 890 G---------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           G                ++ ++I +A  +  T+ A+ +        L R+GCD  Q    
Sbjct: 555 GFQYEGEGVPPNPADEVVVEAMIQLAHRLGLTVTAECVETSAQASRLRRIGCDTGQGWLY 614

Query: 941 ASPLGFNSILKLL 953
           + P+  + I  L+
Sbjct: 615 SRPVSPDRISGLM 627


>gi|313498336|gb|ADR59702.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 699

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 147/581 (25%), Positives = 253/581 (43%), Gaps = 16/581 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441
              ++Q       +SQ +    +     +      V   D+   R+         + G  
Sbjct: 129 ELELLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLETQRILLANQQAERLFGGP 188

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             SM G +      +     D     L       +G    E RV  A      +  R   
Sbjct: 189 QRSMIGQLP--RECLAPAAGDYLEQQLVRGARSTKGH-AAETRVDTARG-PRTLRSRTLL 244

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             +  G     + +A D TE+  +   I   A  D LTG+PNR  F +RL   L   + +
Sbjct: 245 SQSREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSEN 304

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             L   +  +D+D +K IND LG A GD +L  L +R+   L+  D LARL G+ F ++L
Sbjct: 305 AKLTAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVL 363

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                     + A  + K+I+ P  +   +  V  SIG A        + ++L  A++A+
Sbjct: 364 TGLEGRDAACNTAQRLIKAISPPFQIEGHQFVVGVSIGIAIAPDDNDQAEQLLGYADMAL 423

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N  E F V        R +++ DL  A+   +L L Y P++      + G E
Sbjct: 424 YQAKRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDHQTSSVTGYE 483

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G +   +F+ IAEE  +I  +    L    ++  SW  +       + +N
Sbjct: 484 ALLRWEHPTRGMVMPMDFIPIAEETGLIHELGNRALNLACQEAASWDSEQ-----TVSVN 538

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++    + +L   +   ++ +   P R++L  +ESV++GN E +   L  L+ +G+S++
Sbjct: 539 LSAVQFKNGDLVHTVALALADSGLPPQRLELEITESVLLGNSEENVRTLRALKDLGVSIS 598

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S L YL   PFD +K + S +    + R A  I+R+I  ++ ++     A+ 
Sbjct: 599 LDDFGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIIRAITELSNSLMIKTTAEG 658

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGF-NSILKLLKERF 957
           +  E  ++ L   GC + Q      P      + +++ +  
Sbjct: 659 VESEEQMRRLAAEGCSHFQGYFYGRPAPAGERLKQVITQEQ 699



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 36/128 (28%), Gaps = 7/128 (5%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF- 464
             L +    D  ++            P      G  +  + G   +        D +   
Sbjct: 11  YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYRAEEIVGQHYSLFYT----DAERVA 66

Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L+       GR +        D       + I  + +  G ++ +  +  DI+E+ 
Sbjct: 67  GLPALNLEQARSTGRFEETGARLRKDGTVFHAHVVIEAVYDDAGQLVGFAKVTRDISERH 126

Query: 524 KSLEGILC 531
           +    +L 
Sbjct: 127 RQELELLQ 134


>gi|113866056|ref|YP_724545.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113524832|emb|CAJ91177.1| predicted signal transduction protein containing PAS, GGDEF and EAL
           domains [Ralstonia eutropha H16]
          Length = 880

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 148/623 (23%), Positives = 268/623 (43%), Gaps = 10/623 (1%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
            +     +  F     +  ++   L    +   +     +   L+   +   +  +    
Sbjct: 261 RVFGYYRLPEFGLNFVVGESVGLVLAPYEVYRRVALAGAMASTLLLGLLYYSLRRSMGER 320

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           +    + +  SL    S + +    +    +   P  A   G  +  + G   + +    
Sbjct: 321 RRHMEEMKLASLVYSSSSEAMVVTSLDGTIIDVNPAFAAATGYTAKEVKGRPGHIVSG-- 378

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +       L + V  + GR   EF +R  D       + +           R + + +
Sbjct: 379 AGNAAGLVERLRTTVASK-GRWSGEFSIRRKDGSEFPAYLTVDTYLAHAYGERRRVALIH 437

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE++++ E I   A  D LT +PNR+ F DRL   ++ S    ++   ++ ID+D++K
Sbjct: 438 DMTEKRQAEEVIRHQANFDALTDLPNRRLFFDRLRQEIERSRGTQDV-LALLFIDLDRFK 496

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND LG   GD +L+   RRI   ++  D +ARL+G+ F +IL +  ++      A A+
Sbjct: 497 EVNDTLGHDQGDLLLLEAARRIAASVRASDTVARLAGDEFTVILPAVGDAGVAGGIAQAI 556

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + IA P  L    + V+ASIG A+W      + ++L  A+ AM+ AK  G N  + F  
Sbjct: 557 LERIAAPYRLAGELVVVSASIGVATWPKDADNAEDLLVCADQAMFAAKEEGRNRWKVFTQ 616

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +      +R+ I +DL  A+ + +  L Y PI+ L   ++   EALI+WDHP  G I  +
Sbjct: 617 ALLQAERERLRITQDLRTALASGQFALHYQPIVDLRTGKVCKAEALIRWDHPVRGPIHPA 676

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGM 814
           +F+ +AEE  +I  I  ++L      +  W+         I +N +  +     +  E  
Sbjct: 677 DFIAVAEESGLIIDIGRWVLTEALDQLARWQVLLGK-GFQISVNKSPVEFSAPAIGPESW 735

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++I +       + +  +E  +M         L R +  GI + LDDFGT  S LSYL 
Sbjct: 736 SSMIERRNVPVGSLVIEITEGSLMEQNADVMDQLSRFQAAGIEIALDDFGTGYSSLSYLR 795

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T     +A+  +II MA  +   +IA+ +  E     L   GC
Sbjct: 796 RLDIDYIKIDQSFIRSLTRGPDDVALCHAIISMAHALRIRVIAEGVETESQRDILVAAGC 855

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           DY Q      P+  ++    +  
Sbjct: 856 DYGQGHFFCPPVEASAFEAFVSA 878


>gi|119945285|ref|YP_942965.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119863889|gb|ABM03366.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 610

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 219/444 (49%), Gaps = 11/444 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ K  E +   AF D LTG+PNR+  +DRL   L  +         VM ID+D +K IN
Sbjct: 164 EKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVR-QGFESAVMFIDLDHFKDIN 222

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAI 635
           D LG  VGD +L+ + +R+   L+  D +ARL G+ F +IL + +      + K    A 
Sbjct: 223 DTLGHEVGDLLLIQIAQRLESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIAD 282

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++  P  L   E   T SIG A +     T+  +LK A++AMY AK  GGN +  F
Sbjct: 283 KIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGLLKQADIAMYQAKKAGGNTMRFF 342

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                    V   ++ +L +AV  S+  L Y   +      + G EALI+W HP+ G +S
Sbjct: 343 NQKMQDIINVRTSLEHELRIAVAKSQFNLYYQIQMD-SSNRVWGAEALIRWVHPERGLVS 401

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ +AEE  +I  I  +++E     I  W+ ++    + + +N+++K     +  + 
Sbjct: 402 PATFIPLAEETGLILPIGQWVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQ 461

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q+ + +   S + +KL  +ES+   + + +   +  L  IGI  +LDDFGT  S L YL
Sbjct: 462 VQSAVRRHAISANLLKLELTESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYL 521

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +          AI+++II MA  ++  +IA+ +  E   + L   G
Sbjct: 522 KQLPLDQIKIDQSFVRDIAIDSNDRAIVKAIIAMAHILKIDVIAEGVETEEQRQLLLGKG 581

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C + Q    + P+       L++ 
Sbjct: 582 CSFFQGYLFSKPIPIEQFEALIRS 605


>gi|54294243|ref|YP_126658.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens]
 gi|53754075|emb|CAH15548.1| hypothetical protein lpl1308 [Legionella pneumophila str. Lens]
          Length = 792

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 169/789 (21%), Positives = 325/789 (41%), Gaps = 46/789 (5%)

Query: 182 KDTVNSFTLYR---GIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDF 236
            +      L+      I G A  + I     + V    +LI    F   +  L    + F
Sbjct: 23  IEKEQVKLLFDQVGMAISGEALAVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLF 82

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL 296
            +  +           W     ++++SS + + F         + +  I    +      
Sbjct: 83  HYNKQ---PTLFSTEKWLFLFNLSVASSGLAWGFASSIMIPASSTLHQIFVVFLITGVTA 139

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
              S Y P+  +         +V  +  F I+   KG    V L+  +  I        M
Sbjct: 140 AANSLYSPVRLSY-----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIY---MGIM 188

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                  N I+   L     +  +     +++  +     ++ +          +  + D
Sbjct: 189 LFISYYSNRILINTLKMRFKISNLNSTKDILEKKVVDR--TKELEKILALTKSTLESTAD 246

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDS 470
            +   D+  +          + G++ G +                 +  +   F   +  
Sbjct: 247 GILVVDLKGNIEFCNQQFLKMWGISPGFIESHNDTETIQYVLNQLKNPEE---FLKQIKE 303

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                      E      D +      R       +  I+  +    D+T        + 
Sbjct: 304 LYNNPNQESFDELHF--KDGKIF---ERYSQPHWLDNKIIGRVWSFRDVT----LRTRLA 354

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+PNR +  DRL   ++      N   +V+ +DID +K IND LG   GD 
Sbjct: 355 YQANHDSLTGLPNRTALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDI 413

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L   +RR+   ++  D +AR  G+ F ++L+       +   A  + K++A PI L  +
Sbjct: 414 LLYEFSRRLKGCIRHSDTVARFGGDEFVLLLM-TTEPKDVILVAQNILKAVAQPIKLPTQ 472

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-- 708
           E+ VT SIG + +    I +S +LKN++ AMY AK  G N+ + +  S  +     ++  
Sbjct: 473 EVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQ 532

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A++N+E +++Y PI  L + E+VG EALI+W HP  G +S  EF+ IAEE  +I 
Sbjct: 533 TQIHNAIKNNEFFILYQPIYSLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLIN 592

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++L        +W+    +P I I +N++ + L ++   E  ++++ ++   P  +
Sbjct: 593 QVGEWVLRNACIQNKTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYL 651

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++ F+ES ++         L ++ ++GI + +DDFGT  S LSYL   PF+ +K + S +
Sbjct: 652 EIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFI 711

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +     +I+ +II MA ++E  ++A+ +        + + GCD +Q      P+  
Sbjct: 712 QNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKA 771

Query: 947 NSILKLLKE 955
           +  +KL+++
Sbjct: 772 DKFVKLMQK 780


>gi|149186877|ref|ZP_01865187.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148829544|gb|EDL47985.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 749

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 156/663 (23%), Positives = 286/663 (43%), Gaps = 36/663 (5%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
            L   +            I++    +     + Y  +     A ++      + +W    
Sbjct: 103 GLGGFAAATVATPGQFFMISILLSGMMGASAMSYGAIAMPVPAFVVPAGLGFLAVWVA-- 160

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIG--FTVIQHVLATGYFSQGIFSDGERQSLAV- 411
                    +  +    +  +  + +LI   F+  +  +A     +      E   L + 
Sbjct: 161 -------FPDAPLATGSIATIAYVAVLIRGAFSNERSFIAKLRAEERATDSAETVRLLMN 213

Query: 412 ---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                + D +W+ D     V  +     + G     + G    +L      D  + R  L
Sbjct: 214 DFTEQASDWLWEIDGGLRIVNPSDRFIHVAGREGLQLSGK--AFLDLF---DETSERRQL 268

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +S +  RR   +    +     +  W  +  RP   + G    + G+A+D+T Q+++   
Sbjct: 269 ESELRNRRVFRKLTLPL-TISGKRRWWALSARPCEANGG----FRGVASDVTAQREAEAR 323

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LT + NR  F   L   L+     D  R  V+ +D+D++K IND LG AVG
Sbjct: 324 INHMAHYDALTNLANRYLFNASLDHALNR--LLDRHRICVLYLDLDQFKGINDTLGHAVG 381

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  + +R+   L    ++ARL G+ F ++L  EN        A  + +++  P  + 
Sbjct: 382 DALLREVGKRLENTLNGRGLVARLGGDEFAVLLQDENLDHVAMTIAHRIMENLRDPYVIE 441

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706
             EI +  SIG A       ++S+++K+A+LA+Y AK  G   V  F  +   F   R  
Sbjct: 442 GSEICIGTSIGVAFADPQGPSASDLMKHADLALYRAKELGRGKVVVFESALVEFALARRE 501

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ DL  A+ + +L L + P++ L   +I+G EAL++W HP+ G I   EF+ +AE+  +
Sbjct: 502 LEMDLRTALTDGDLRLHFQPLMDLQTNKILGYEALVRWHHPERGLILPDEFIPLAEQTGL 561

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++   A        +     + I IN++   L  ++L   + + ++    +PS
Sbjct: 562 IVELGEWVIREAAATARLLPGE-----LTISINLSPAQLRSSQLLATVVSAVAHAGIAPS 616

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +E V + + E    +L  LR  G+ + LDDFGT  S   YL   PF+T+K + S
Sbjct: 617 RLELEITEGVFLEDSEDCMRILRELRTFGVRIALDDFGTGYSSFGYLRRFPFNTIKIDRS 676

Query: 887 LMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E      I+R+I  +A  +  ++ A+ I     +  L  +GC+  Q   +  P+
Sbjct: 677 FVAELRESDDCRRIVRAISDLAHGMGMSVTAEGIEDVSQLSMLRDLGCEVGQGFLLGKPM 736

Query: 945 GFN 947
            F 
Sbjct: 737 PFQ 739


>gi|167033233|ref|YP_001668464.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166859721|gb|ABY98128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 698

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/568 (25%), Positives = 247/568 (43%), Gaps = 15/568 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGS 444
           ++Q       +SQ +    +     +      V   D+   R+         + G    S
Sbjct: 132 LLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGPGRS 191

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           M G +      +     D     L       +G    E RV  A      +  R     N
Sbjct: 192 MIGQLPG--ECLAPAAADYLEQQLARGARSPKGH-AAETRVDTARG-PRTLRSRTLLSQN 247

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G     + +A D TE+  +   I   A  D LTG+PNR  F +RL   L   + +  L
Sbjct: 248 REGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFNERLRQALVRGSENAKL 307

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D +K IND LG A GD +L  L +R+   L+  D LARL G+ F ++L   
Sbjct: 308 TAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVLTGL 366

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                  + A  +  +I+ P  +   + +V  SIG A        + ++L  A++A+Y A
Sbjct: 367 EGRDAACNTAHRLINAISPPFQIEGHQFSVGVSIGIAIAPDDNDQAEQLLGYADMALYEA 426

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  E F V        R +++ DL  A+   +L L Y P++      + G EAL+
Sbjct: 427 KRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDQQTSSVTGYEALL 486

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP  G +   +F+ IAEE  +I  +    L    ++  SW  +       + +N+++
Sbjct: 487 RWEHPTRGMVMPMDFIPIAEETGLIHELGNRALNLACQEAASWDSEQ-----TVSVNLSA 541

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               +  L   +   ++ +     R++L  +ESV++GN E +   L  L+ +G+S++LDD
Sbjct: 542 VQFKNANLVHTVALALADSGLPAQRLELEITESVLLGNSEENVRTLRALKDLGVSISLDD 601

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L YL   PFD +K + S +    + R A  I+R+I  ++ ++     A+ +  
Sbjct: 602 FGTGYSSLGYLRSFPFDRIKIDKSFVHDMCDSREAMSIIRAITDLSNSLMIKTTAEGVES 661

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
           E  ++ L   GC + Q      P   + 
Sbjct: 662 EEQMRRLAAEGCSHFQGYLYGRPAPASE 689



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L +    D  ++            P      G  +  + G   +        +R    
Sbjct: 11  YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYHADEIVGQHYSLFYT--DAERAAGL 68

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L+       GR +        D       + I  + +  G ++ +  +  D++E+ + 
Sbjct: 69  PALNLEQARSTGRFEEMGSRLRKDGSAFLAHVVIEAVYDDAGQLVGFAKVTRDVSERHRQ 128

Query: 526 LEGILC 531
            + +L 
Sbjct: 129 EQELLQ 134


>gi|83311070|ref|YP_421334.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945911|dbj|BAE50775.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 820

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 148/561 (26%), Positives = 257/561 (45%), Gaps = 10/561 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              +     S AV  S   V                A++ G +S ++ G     L  ++ 
Sbjct: 263 KAEASVRLLSQAVEQSPVAVAVVGGDGMVQYVNSAHASLTGHSSSAVVGKP---LSALYP 319

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                        +  + G LQ E +V   D  + W  +    ++    +   Y+    D
Sbjct: 320 GKAGAMLGDFWRTLLGQ-GELQGELQVNRQDGTWQWQQVHGSKVATPGEEGTHYLLQIED 378

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T +K     +   A  D LT +PNR   LDRL   +D++  D   +  ++ +D+D +K 
Sbjct: 379 VTLRKDQERRLQHQALFDGLTDLPNRVHALDRLAREIDMA-RDHGRKVGLLFVDLDGFKA 437

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++LV    R+ +      ++AR  G+ F +I+    +     + A A+ 
Sbjct: 438 INDSLGHEYGDELLVLAAERLRQAAGDGGVVARFGGDEFLVIMGDMEDGAAAGEVAAAIV 497

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
              + P  +  R++  TASIG A +     T   +L+NA++AMY AK  G N    F  R
Sbjct: 498 DRFSQPFTISRRDLISTASIGLALYPEDGRTQQTLLRNADIAMYQAKLAGRNRFCFFTSR 557

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++     R+ ++ +L  AV   + +LVY P++ +     VG+EAL++W +P+ GN+    
Sbjct: 558 MNEEAEARLRMEGELRRAVGTDQFHLVYQPLVAVATGRAVGVEALLRWSNPELGNVPPDR 617

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE   +I AI   +LE   RD   W +      + + IN++ +   D      ++A
Sbjct: 618 FIPQAETCGVIVAIGRMVLETACRDARRWVED-GHADLRLCINVSPRQFQDAGFLGDVRA 676

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +  SP+ ++L  +E +++        LL  L  +G+ L++DDFGT  S LSYL   
Sbjct: 677 ALAGSGLSPANLELEITEGLLLTERGDVDTLLRTLTDMGVKLSIDDFGTGYSSLSYLERF 736

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFDT+K + S M G    ++R  ++ +I+ MA  +   +IA+ +     +  L  + CD 
Sbjct: 737 PFDTLKIDRSFMIGMLERQERKVLVETIVAMASGLGLEVIAEGVETAEQMAHLAAINCDI 796

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + P+    I  LL  
Sbjct: 797 AQGYLFSRPVPAGDISPLLDR 817



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 9/138 (6%)

Query: 395 YFSQGIFSDGERQSLAVLGS-----GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  + GER    +  +      D+++  D     +  +P+ AT+ G ++  + G  
Sbjct: 14  AGLHAAEAAGERIPAGLHAALLRDLPDVLYSVDAAGRFIWVSPNAATVFGYSAEELVGME 73

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L Y    DR      +          ++ E  +R  D    W  I    + +  G I
Sbjct: 74  AAAL-YAKPEDR---VGTVRRIRDAGGRAVRSEVEMRRKDGISIWAAIYACALMDGEGRI 129

Query: 510 LRYIGIANDITEQKKSLE 527
               G   DITE  ++ +
Sbjct: 130 TGINGAIRDITEIWQTRK 147



 Score = 44.6 bits (104), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 10/134 (7%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R       + + +         +       T+   +   +          I   
Sbjct: 149 LGDSEDRFRRLSDVATEAI-CIHFQGKIIDMNKAFETLFAYSRDELLTMWA--WDVIDPR 205

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D    ++++            YE R    D     M I  +        +   +    D+
Sbjct: 206 DISLAKSMVAQQYEAP-----YEVRGIRKDGSVFPMEIHSKHSRMGGDSVR--VTSIRDL 258

Query: 520 TEQKKSLEGILCNA 533
           T+ KK+   +   +
Sbjct: 259 TQSKKAEASVRLLS 272


>gi|237748638|ref|ZP_04579118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oxalobacter formigenes OXCC13]
 gi|229380000|gb|EEO30091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oxalobacter formigenes OXCC13]
          Length = 999

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/623 (23%), Positives = 267/623 (42%), Gaps = 34/623 (5%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           AW ++ + F+ + M                      V  +    +QH            +
Sbjct: 372 AWYILLLAFLVIVMTGLGM-----------------VFYMRHRHMQHKTERLRMELKQKA 414

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDR 461
             +        + D++   D     +        + G +   M G  IR         D 
Sbjct: 415 LRQHYDYLSKYANDVIILMDGNGTMIEANDRSEKMFGKSRAEMIGQNIRCVFDL---KDT 471

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             F          +   L +E   +  +     + I  R +  ++G  L    I  DI+E
Sbjct: 472 SVFEEKWMELKLEKG--LIFEAYGKHTNGSIFPVEISSRVI-ETDGR-LFVQFIIRDISE 527

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +KK+ E +  +A  D ++G+PNR+ F ++L      +   D     +M +D+D +K +ND
Sbjct: 528 KKKAEEMVWRHANYDQISGLPNRRMFTEKLFFETRKAQRSD-ASVALMFLDLDHFKDVND 586

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G  VGD +L   + R+   ++  D +ARL G+ F +I+   ++   +   A  +   +
Sbjct: 587 TMGHGVGDCLLKEASDRLRVCVRETDTVARLGGDEFTVIVSDIDDFKDVERVAQCILDEL 646

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P  L  + + ++ASIG   +      + +++KNA+ AMY AK  GGN    F  S   
Sbjct: 647 SEPFTLEGQSVHISASIGITFFPQDAKDTHDLMKNADQAMYAAKSLGGNQYHYFTPSMQE 706

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  DL +A+EN++   V+ PII L   +I   EALI+W HP  G I+ + F+ 
Sbjct: 707 AVQKRMHMINDLHVALENNQFETVFQPIIDLKTGDICRAEALIRWHHPVHGLINPASFVP 766

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM-QALI 818
           +AE+  +I+A   ++    A+    WR    +P   + +NI+     +  +   +  A +
Sbjct: 767 LAEDTGLIQAFGDWVFLEAAKAASRWRK--YVPDFQVSVNISPVQFKNEGIDTNVWFAHL 824

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  I +  +E +++   E +   L  L   GI + LDDFGT  S L+YL  +  
Sbjct: 825 KSLNLPPEAIVIEITEGLLLDIDEHTSNQLLALSDAGIEVALDDFGTGYSSLAYLKKLDI 884

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK +   +     +E+   +  ++  MA  ++  +IA+ +     ++ L    CDY Q
Sbjct: 885 DYVKIDQMFVKNLTTSEEDRVLCEAMTVMAHKLDIAVIAEGVETLAQLRMLASFNCDYGQ 944

Query: 937 DSHVASPLGFNSILKLL-KERFP 958
             +++ P+      +LL   R P
Sbjct: 945 GYYISGPVNDEEFEELLAASRNP 967


>gi|332528841|ref|ZP_08404815.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
 gi|332041700|gb|EGI78052.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
          Length = 779

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 139/592 (23%), Positives = 273/592 (46%), Gaps = 8/592 (1%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
             ALV    ++ +++   + +   +     + +  +       V  +   ++  D     
Sbjct: 178 AAALVLLFQVVSLIVSVLIHRAWRSQATALRALRFEKGLNQTIVRSAPLAIYTRDTEGRV 237

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    + G     + G     +P     +  +    L   V         E + + 
Sbjct: 238 TAWNPAAEKLFGWTEAEVLGRFLPSVPL--ATEYQDEDKALRLRVIAGESIPDIEVQRQK 295

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
              +   +   + P+ + +G I  ++ IA D+T +K+    +   A++D LTG+PNR   
Sbjct: 296 VTGEMFDLSASLSPLRDDDGTISGFLTIAADVTARKQVERQVEFLAYRDVLTGLPNRSLL 355

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            DR    +  +      +  ++ +D+D +K IND LG A GD +L  + RR+ + ++  D
Sbjct: 356 QDRFAQAIARAERHHR-KVALLFLDLDHFKTINDSLGHATGDALLKEVARRLSDGMRESD 414

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            ++R  G+ F ++L     +  I    + +R+ +  P+     E+++++SIG A +    
Sbjct: 415 TISRQGGDEFLVVLSDLEGTEMITPVLLKIRERLQQPLLFDGHELSISSSIGVALYPDDG 474

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           +    +LK A+ A+Y AK  G N    F  ++++   D + +K  L  A+   EL L Y 
Sbjct: 475 LDFETLLKKADTALYRAKDAGRNQARFFDEQMNTEAVDHLRLKNGLHRALSRGELELHYQ 534

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P   L    ++G+EAL++W HP+ G IS + F+ +AE+  +I  I  +++ +     ++W
Sbjct: 535 PQFDLRTGAVIGVEALLRWRHPEEGLISPARFVPVAEDSGLIVPIGEWVIRQACAQAMAW 594

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           R     PP+ + +N+++      ++   +   +  T  +P  ++L  +ES+++ N ER  
Sbjct: 595 RQAGL-PPLLMAVNLSAVQFRRGDVQTIVAQALRDTGLAPELLELELTESILLQNTERVL 653

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
             + +++++G+ L++DDFGT  S L+YL     D +K + S +          AI+R+II
Sbjct: 654 EGVDQIKQLGVKLSIDDFGTGYSSLAYLKRFAVDKLKIDQSFVHDLARDSDNAAIVRAII 713

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            MA  +    IA+ +     +  L R GCD  Q   +A PL      +L+K 
Sbjct: 714 QMAAGLGLRTIAEGVEDAEVLAVLRRFGCDEAQGYFLARPLPATEFAELVKR 765


>gi|241763941|ref|ZP_04761983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241366764|gb|EER61205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 741

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 137/612 (22%), Positives = 248/612 (40%), Gaps = 54/612 (8%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H  A    S  +         A++G    V+  D  R           +LG   G +   
Sbjct: 140 HKQAQAQLSAALREKQALFDHAMVGI---VFLRD--RHLTRCNRHFEQMLGYGPGELATS 194

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                        +  R              + E  +   D       +R + + ++   
Sbjct: 195 PSRRWYASDAQWEEVGRRCYPVLAAGL--SFEGEIEMCRKDGTAVVCEVRSKLI-DAADP 251

Query: 509 ILRYIGIANDITEQKKSL---------------------------------------EGI 529
               I I  DITE+K++                                        E I
Sbjct: 252 SEGSIWITMDITERKQTQAALALAHERLEQQVQDRTRELRETVDSLHSEIRDRKADQERI 311

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR    +R    + L+  +      V+ +D+D +K +ND LG  VGD
Sbjct: 312 YWLAHYDALTGLPNRTLLGERAEHAIRLA-RESGTPLAVVFLDLDHFKHVNDSLGHRVGD 370

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +LV + RR+  +++  D + RL G+ F ++L    N+   A  A  ++++      +  
Sbjct: 371 ALLVEIARRLRAVVREKDTVCRLGGDEFVLLLPG-ANAHGAARVAGKLQEASRQYYQIDH 429

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707
            E+T+  S+G A +         + ++A++AMY AK  G N    F           + +
Sbjct: 430 HELTMAPSMGIALFPGDGEDFDTLTQSADVAMYQAKLDGRNTFRFFTPEMQAQSVRALQL 489

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+E  +L + Y P + L    +  +EAL++W HP+ G IS +EF+ IAE+   I
Sbjct: 490 ENALRRALERDQLRMHYQPQMDLTTGRVHSVEALLRWHHPQLGTISPAEFIPIAEDSGQI 549

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L    + + +WRD+     + + +N+++      +L E +  ++++       
Sbjct: 550 LPIGEWVLRTALQQLKAWRDR-GFADLSMAVNLSAIQFRQPQLPEMVSQILAEMELPSDA 608

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E V + +P  +   + +L   G+ L++DDFGT  S LS L       +K + S 
Sbjct: 609 LELELTEGVAVDDPHTAAATMNQLHARGVRLSMDDFGTGYSSLSQLKRFQIFKLKIDQSF 668

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          AI+ +II MA+ +     A+ +  E  +  L   GCD  Q  H ++PL 
Sbjct: 669 VRDLGNDGNDRAIVSAIIRMAQALGMRTTAEGVETESQLAFLREQGCDEAQGYHFSTPLP 728

Query: 946 FNSILKLLKERF 957
              +   ++ R 
Sbjct: 729 APELETFMRRRL 740



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 12/145 (8%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +      Q   +  +G  +      R  V      A I G  +      + +     +  
Sbjct: 21  LQRTLREQQTLLDSAGAGIVFMR-QRVVVRCNQRYAEIFGYEAPEQLAGLGS--ESFYP- 76

Query: 460 DRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           DR+ FR +         +    + E ++R  +    W  +  R + N        I I +
Sbjct: 77  DREAFRELGRDAYPAMSQGQTYRVERQMRRRNGDLFWGHLTGRLI-NPQDTAEGSIWILD 135

Query: 518 DITEQKKSLEG-----ILCNAFQDN 537
           DI + K++            A  D+
Sbjct: 136 DIDDHKQAQAQLSAALREKQALFDH 160


>gi|241206173|ref|YP_002977269.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860063|gb|ACS57730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 717

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 138/599 (23%), Positives = 262/599 (43%), Gaps = 18/599 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                     +          ++Q         + +          V      V+  D+ 
Sbjct: 121 TFEVLTYGREVRFEGRAAILAIVQDRSEVNAARRQMSDTRSLLDSIVDNLPVGVFVKDME 180

Query: 425 RDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
            D +          I+G+ +  + G           +  D FR             + +E
Sbjct: 181 ADGLYVLFNEACGDIVGMRAEHVVGRTD--RSLFPPSQTDAFREQDRRAFEANAA-ISFE 237

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGI 541
             ++ AD     +    R +    G   RY+ GI+ D+TE++     +   A +D LTG+
Sbjct: 238 ETMQRADGVPRILRTVKRALPTPEGHAPRYLLGISQDVTEERAVEAKLAHLATRDPLTGL 297

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR +F + +      +  D      ++ ID+D +K IND  G A GD +L  ++ R+ +
Sbjct: 298 PNRAAFSEHINQRAVEATADS--AIALLYIDVDHFKHINDSKGHAAGDALLCQVSERLLQ 355

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           L    D++ARL G+ F ++L   +   +   FA  + ++++   +L      VT S+G A
Sbjct: 356 LAGEGDLVARLGGDEFAVVLE-LDEPERAGRFAQRLLQTLSHAFDLDGAREHVTCSVGIA 414

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
                   +  ++++A+LA+Y AK  G +    +      + +    +  +L  A+E  +
Sbjct: 415 LAPDHAGDADVLMRHADLALYAAKESGRSIYRFYETEMRLAAQRRHVMTAELWEALEKRQ 474

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y PI++L ++ I G EALI+W HP+ G ++  EF+ +AEE  +I  I  +++    
Sbjct: 475 FELHYQPIVQLDNDGIGGFEALIRWRHPERGLVAPMEFIPLAEETGLIVPIGDWVIREAC 534

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R    W        + I +N++        L   + A + +T  +  R+++  +ESV + 
Sbjct: 535 RAAGGWP-----VHLRIAVNLSVSQFRHASLLSTVVAALDETGLTADRLEIEITESVFLT 589

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           + ++S   L  L+ +G+ + +DDFGT  S LSYL   PFD +K + S ++G       +A
Sbjct: 590 DADQSLPRLRALKALGVRIAIDDFGTGYSSLSYLRSFPFDKIKLDRSFVSGIETDAGNLA 649

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+R+++ +      T +A+ I  E  +++L   G   +Q   +  P+  +    L+  R
Sbjct: 650 IVRAVVGIGSGFNATTLAEGIETEEQLQKLRAEGFSEVQGYLLGRPMPQHEAEALIDGR 708


>gi|85374283|ref|YP_458345.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
 gi|84787366|gb|ABC63548.1| sensory box/GGDEF family protein [Erythrobacter litoralis HTCC2594]
          Length = 909

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 161/727 (22%), Positives = 305/727 (41%), Gaps = 43/727 (5%)

Query: 262 SSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLY 321
             +L+  +   +      A   Y+  +     A+ F ++    +   S  R  L++    
Sbjct: 78  FMALLPLVAAVVGSLLTQALPSYLAIAAFVSSALFFGIASKVSLWERSFTREVLSAAAAA 137

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL-------------------WMAITKRL 362
               ++   + G    + ++   + I    +G+                           
Sbjct: 138 VAVTVVPSLLYGLALGLWVLLGDLPIAAGVMGVISFNAISATLLTGRPRPMYACLAASWA 197

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGER-QSLAVLGSGD---- 416
              +++       +  V   G  ++    A     +       ER  + A+    D    
Sbjct: 198 PLALMEGNPTNVTMFAVFAAGLAILSRYQAKIDRERAERRQTDERILNRAIDILRDYEET 257

Query: 417 ---IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
                W+ D        +  +A  LG  +  + G     L  +  ++R+     +   + 
Sbjct: 258 GNGWFWETDRRGLLTYVSGPVANRLGTKAKRLIGRPITELFDLAHDNREG-ERTIAFHLS 316

Query: 474 YRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            R      E  V+AA   +  W  I  RP+ +S  +   + G   D+TE+++S E     
Sbjct: 317 ARSAF--QELPVKAAGIEEERWWSISGRPIFDSFQNFCGFRGSGTDLTEKRRSQEHASRL 374

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D+LTG+ NR      L  IL      +     V ++D+D++K +ND LG   GD +L
Sbjct: 375 AHFDSLTGLANRHQMSQSLEKILASPKVANR-ECAVFLLDLDRFKHVNDTLGHPAGDALL 433

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +  R+   +     + RL G+ F +IL       K++  A  + +S++ P ++  + +
Sbjct: 434 KQVAERLESTVGNMGRVGRLGGDEFKVILPGRVPKDKLSYLAAGIIRSLSQPYSIEGQRV 493

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKED 710
            +  SIG A    +  +S ++++NA+LA+Y AK  G      +         +R  ++ D
Sbjct: 494 VIGVSIGIAISPENGESSEDVIRNADLALYAAKDGGRGRFHFYSNDLHSAAEERSQLERD 553

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   +L L Y P+++   E I G EAL++W HP+ G IS ++F+ IAE+  +I+AI
Sbjct: 554 LREAISEGQLELHYQPVVQTATERIAGFEALLRWKHPQHGYISPAKFIPIAEDTGLIQAI 613

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             + +     D+ SW        I   +N++     + +L   + + +++   +P+R++L
Sbjct: 614 GEWAIRTACHDLASWPKS-----IRCAVNVSPLQFSNEQLPTIITSALAQAGVAPTRLEL 668

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV + + E +  +   L  IG+ L LDDFGT  S L YL   PF+ +K + S + G
Sbjct: 669 EITESVFLNDDEGTDAMFAALSGIGVRLALDDFGTGYSSLGYLKTAPFNKIKIDQSFVRG 728

Query: 891 ST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +T    +  AI+ SI  +A+ +     A+ +    ++  +   GC +IQ      PL   
Sbjct: 729 ATVPGSRNGAIIASITSLAQELGMDTTAEGVETLDELDLVRMHGCSHIQGYIYEKPLNKA 788

Query: 948 SILKLLK 954
              K L+
Sbjct: 789 EATKRLE 795


>gi|313497513|gb|ADR58879.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 861

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/564 (25%), Positives = 265/564 (46%), Gaps = 15/564 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +Q + +  +R       + D +W+ D  +     +   A + G       G   N L   
Sbjct: 299 NQALEASEQRFRAVAESASDWIWETDRHQRVTYLSQRFANVTGYPVDGWLGHPLNQLLAC 358

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  +   L +    +   L+  +R    + Q  +  I  R +   +G ++ + G A
Sbjct: 359 DTTPLSPWLDALATADPQQLANLRCTYR--DQNGQNRYCRISARAIW-RDGKVIGFRGTA 415

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT++  +   I   +  D LTG+ NR      L   L   +    L     ++D+D +
Sbjct: 416 SDITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGSDSPPLTLL--LLDLDNF 473

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG A GD VL  +  R+ +  +  D++ARL G+ F ++L   +NS +I  F   
Sbjct: 474 KPINDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSEIDRFCAR 533

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   +  PI    + + + ASIG A   +    + E+++ A++A+Y AK  G N    F 
Sbjct: 534 LIGLLQQPIVFESQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQAKADGKNTWRYFV 593

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R  ++ DL  A+ N E  L Y P  RL D  IV +EAL++W HP+ G +  
Sbjct: 594 AEMNQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALVRWRHPQEGLLGP 653

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I A+  ++L    R    W        + + +N++    L +++   +
Sbjct: 654 DTFIPLAEQSDIIVALGRWVLREACRTAHDWPA-----DVLVSVNLSPAQFLRSDVVADV 708

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++  T +   R++L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL 
Sbjct: 709 REILLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLR 768

Query: 875 YIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             PFD++K +   ++G         A++++II + + +  T+ A+ +  E  +K L +  
Sbjct: 769 TYPFDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEHQLKALEKDR 828

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C  +Q  +++ PL    +  LL +
Sbjct: 829 CHEVQGYYLSMPLDSAGLAALLHQ 852


>gi|330823749|ref|YP_004387052.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alicycliphilus denitrificans K601]
 gi|329309121|gb|AEB83536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alicycliphilus denitrificans K601]
          Length = 816

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 125/578 (21%), Positives = 257/578 (44%), Gaps = 10/578 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           +          + +     +     S D ++  D         P    +LG A+  + G 
Sbjct: 241 YSFRDISRQAEVQAGLRLAARVFESSLDAIFIADERHAVARINPGCEQLLGAAAQGVVGR 300

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L  +  +D + F   +        G  + E R+R  ++    + +    + +  G 
Sbjct: 301 RVTALFAMAQDDAE-FMAEVRQGWEQ-AGFWEGELRLRQEEDAHCCVQLSWVALRDDAGA 358

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           + + IG   D++ Q  + + I   A+ D LTG+PNR     R+   ++ ++        +
Sbjct: 359 VAQSIGFMRDLSVQHAAQKRIEELAYSDALTGLPNRLPLNKRVAAAIE-ASRGHGGGFAI 417

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +ND LG   GD VL  +  R+   L+  D+L RL G+ F I L    ++ 
Sbjct: 418 LFLDLDRFKNVNDSLGHPFGDRVLKLVAERLQGCLRQSDMLCRLGGDEFVIYLHD-ADAA 476

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  +++ +  P  L E   ++  SIG + +        +++K+A+ AMY  K RG
Sbjct: 477 IAESVARRVQEEMLRPFMLDEMGFSIQCSIGMSLYPQDGDALDDLIKHADTAMYRVKERG 536

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 ++         R+ ++  +  A+ +  + + Y P + +    IVG EAL++W  
Sbjct: 537 RGSYGFYQPQMNAHLLSRMKMEHAMRQALNHGHMAVHYQPQVDMATGCIVGAEALVRWTD 596

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G +S   F+ +AEE   I  +  +++E+  ++   W       P+ + +N+++ +  
Sbjct: 597 PEFGVVSPGTFVPLAEESGYIVTLGAWVMEQAVKEAAHW--MGCGTPLVVSVNVSALEFR 654

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                E + AL+++       ++L  +E+V++ + +  + +L  L ++G+ L++DDFGT 
Sbjct: 655 QAGFVERISALLAQYGLPARWLELELTETVLLQDAQEMQQVLDALARLGVGLSIDDFGTG 714

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL  +    +K + S + G        AI+++I+ M + +   ++A+ +  +   
Sbjct: 715 YSSLAYLKKLTIHRLKIDKSFVGGLPGDGGDCAIVQAIVSMGRALRIGVVAEGVETQAQR 774

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + L  MGCD  Q    A  +        + E     K 
Sbjct: 775 QALQGMGCDCYQGFLCAPAMPAADFRVRMAEPATGAKR 812



 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 65/265 (24%), Gaps = 28/265 (10%)

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           S  A    +   ++        I     A+  L         GM        L+     +
Sbjct: 7   SFAAIWNGIDLAAWLVDGHALQIRHANEAAARLVGRSVADMEGM----PVHGLVVTPEDL 62

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--------------FTVIQHVLAT 393
             W             +  ++    G LV +   +                  +Q     
Sbjct: 63  IFWGQSHAGIAAGIHSHTWVRNMHSGNLVPVDRRVLAIQASEGDPADRYLLLTMQDRSEH 122

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               + + S        +  + D V   ++  +       +A I  L    +     +  
Sbjct: 123 EASQRELESLLSELRATLDSAADGVLTCNLHGEIRAFNQRLAQIWQLPR-ELLLRRDDAA 181

Query: 454 PYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +H+     D + +R  L +              +R        +  R  P     G  
Sbjct: 182 IRVHMESQVLDAEAYRLRLAAIAHEPMLETTDILHLRNG----MTVEQRSVPQL-IQGRP 236

Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534
              +    DI+ Q +   G+   A 
Sbjct: 237 AGRVYSFRDISRQAEVQAGLRLAAR 261


>gi|66045221|ref|YP_235062.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255928|gb|AAY37024.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 730

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 152/584 (26%), Positives = 272/584 (46%), Gaps = 26/584 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V      + + G ++  + G   +   
Sbjct: 154 AQVALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAHEVLGRTAHEVG 213

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +    R++    L      +      E   R        + I +  ++ +N    
Sbjct: 214 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 264

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI   K +   I   A+ D LTG+PNR   LDRL+  + L     NLR  ++ 
Sbjct: 265 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 323

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++     S   
Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDE 383

Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               + + A  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y AK
Sbjct: 384 VTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 443

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +   +E I G EAL++
Sbjct: 444 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 503

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L    +       Q  +P     + +NI+
Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVNIS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L ++  E ++  ++      S +KL  +E +V+ N + + L +  L+ +G+S  +D
Sbjct: 564 PRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 623

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +    +      I+R+I+ MA+++   +IA+ + 
Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVE 683

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
               +  L ++GC   Q    + PL       LL+ + P  +  
Sbjct: 684 TSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLELKRPAQQPA 727



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                   L+     + +    +R  LA+  +    WD DIVR+R+  +   A + G+ +
Sbjct: 13  TVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGMPA 72

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +       +   +   +R   R I  + +   +  LQ  +R +  +     +  R R  
Sbjct: 73  RTFDESGGQFFGSLPAEERRRMRAIYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIY 132

Query: 503 SNSNGDILRYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539
            +  G  +R  G   DIT+Q      ++ E     AF    D++T
Sbjct: 133 RDEQGQPVRLSGTLMDITQQCAQVALEASEEKFAKAFHSSPDSIT 177


>gi|170706903|ref|ZP_02897361.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170128321|gb|EDS97190.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
          Length = 593

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 144/589 (24%), Positives = 275/589 (46%), Gaps = 11/589 (1%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L   L      +   V        + S+ +    ++         D ++  D+    +  
Sbjct: 6   LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVFLNV 65

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
               + +LG  +  + G        I   D+    + L+         LQ   +    D 
Sbjct: 66  NKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY--KDG 121

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
             + + + I P+   +G I     +  DIT  KK  E I   AF D +T I NR  F  +
Sbjct: 122 FTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKK 180

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L  I+  + T ++    ++ +D+D++K IND LG + GD +L  + +R    L     L+
Sbjct: 181 LKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEEVAKRFQSCLPSHTHLS 239

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I++ +  +   + +    + + +     + E  +T++ SIG A +  S I +
Sbjct: 240 RIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTLSLSIGIAIYPHSGIDT 299

Query: 671 SEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           + +LKNA +AMY   AK      +    ++     R+ +++DL  A++N EL+L+Y P +
Sbjct: 300 ATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQPQV 359

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  + L++    +  W   
Sbjct: 360 DSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRWHTS 419

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + I +N+++K+    +  + + A ++ T    S + L  +E + M +   + + L
Sbjct: 420 -GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETLIKL 478

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMA 906
             L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + + +  + I+++II +A
Sbjct: 479 RTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLA 538

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S   LLK+
Sbjct: 539 NTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFSTLLKK 587


>gi|196044463|ref|ZP_03111698.1| sensory box/ggdef family protein [Bacillus cereus 03BB108]
 gi|196024498|gb|EDX63170.1| sensory box/ggdef family protein [Bacillus cereus 03BB108]
          Length = 906

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLYYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVTFLQKNKCQFIQGYYYSKPIHINAFT 897

Query: 951 KLLKE 955
           +LLK 
Sbjct: 898 ELLKS 902


>gi|326797377|ref|YP_004315197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326548141|gb|ADZ93361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 993

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 151/771 (19%), Positives = 295/771 (38%), Gaps = 23/771 (2%)

Query: 199 ASLLAIFLTIFYMVNRSSMLI--PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRAC 256
           A+LL       ++   +++ +       +     Y  I  G+ +  V   S  LL   A 
Sbjct: 221 AALLFFAFYSNFVTLAAAIFLTGVMSYFSVSYNLYTPISSGYQNNDVFFYSPLLLTLLAP 280

Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGY-ITFSGIACIAILFCMSFYYPMVTASIARITL 315
           + +++ S  +      L  +    +  Y      +  I     M++      + ++    
Sbjct: 281 TLLSILSMRMNKTLSDLETSEASFRALYEKAPIAMHTINTAGVMTYVSDRWLSMLSFKRE 340

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
             I      F+     +  +R                   +     +  DI   A+V  +
Sbjct: 341 EVIGKRSIDFLTPSSREKAKREYFPELISTGYLTDKEVQAIKKDGSII-DIDISAVVDPI 399

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                +     ++ +    +  + +  + E   + +   GD V   D         P   
Sbjct: 400 KNNGAIHAIAALKDITEEVHLREALAEEKELLEITLHSIGDGVIATDKEGCITFLNPVAE 459

Query: 436 TILGLASGSMHGPIRNWLPYIHINDR-------DNFRTILDSFVGYRRGRLQYEFRVRAA 488
            +L L+   + G    +   +++ D+       D    +L S    R  +      ++  
Sbjct: 460 QVLQLSKNDVIGTK--FEQTVYLFDQRTGNIIDDLISRVLASESTQRIDQFDAA--IKNH 515

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
             Q   +   I P+ N+NGDI+  + +  D+TE +     +   A  D LT +PNR   +
Sbjct: 516 RGQICCIQDSISPIKNNNGDIVGTVMVFQDVTENRNMSRQMEYLAHHDMLTKLPNRALLI 575

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           ++L  +      +      ++ +DID  K +ND  G   GD++L+     I ++++  D 
Sbjct: 576 NKLLELCPHDDIEPEESFALLFVDIDNLKSVNDQYGHKAGDELLIDTVNNIQQVMRENDF 635

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LAR+ G+ F +I            F   + KS+  P+ +   +I  + S+G + +  +  
Sbjct: 636 LARIGGDEFILISPHYEEKSTFEPFCRKLIKSVCRPMTIEGHDIQTSVSVGVSFYPDNGC 695

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHP 726
            +  +L +A+ AMYH K +  N    +             I+E +   +   E  L + P
Sbjct: 696 DADTLLSHADAAMYHVKAKNKNDYRFYTPEFDKETIWLAEIEEKMRQGLPRKEFVLYFQP 755

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           II      +   EAL +W +    +I    F+ IAE+  +I ++   +L +    I    
Sbjct: 756 IIDSSSHTVTYFEALCRWHNDDAIDIMPDIFIPIAEQSGLIGSLTTQLLHQACSFIKELD 815

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           +      I I  NI++  L   +    ++A+  K    PS      +E+V+M N +R+  
Sbjct: 816 ES----NIRISFNISATHLQSQDFMSEIKAVFDKENVVPSCFIFEITETVLMQNWKRNVS 871

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904
           LL  L+ +G+ + +DDFGT  S L YL   P D +K +   +            + +I+ 
Sbjct: 872 LLNDLKLLGVEIAVDDFGTGYSSLGYLKRFPVDILKIDREFIRDLHHDAKNRIFVSAIVS 931

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           MA  +   I+A+ +  +     L  M C   Q  + + PL    +L+ L  
Sbjct: 932 MASALSLRIVAEGVENKEQASILAEMNCFLQQGYYYSKPLPILKVLRHLNS 982



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/311 (9%), Positives = 76/311 (24%), Gaps = 22/311 (7%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH--WN 276
                     + +       L ++  L           S +  + S        ++    
Sbjct: 132 PAFLGSIVAAMMFSGSTNQHLIEIWLLS--------FISMLVSAVSFFPLGIYLINHSLK 183

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           R    +           A+L  +S +  +               +Y+ F+          
Sbjct: 184 RALDDLVNPKGFIAVGCAVLVTISVFSTLPYPYAYLSAALLFFAFYSNFVTLAA------ 237

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A+ L        + +       +   +ND+   + +   +L   L+    ++        
Sbjct: 238 AIFLTGVMSYFSVSYNLYTPISSGYQNNDVFFYSPLLLTLLAPTLLSILSMRMNKTLSDL 297

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
                +           +   +   +        +    ++L      + G     + ++
Sbjct: 298 E----TSEASFRALYEKAPIAMHTINTAGVMTYVSDRWLSMLSFKREEVIGKRS--IDFL 351

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             + R+  +      +         E +    D     + I        N   +  I   
Sbjct: 352 TPSSREKAKREYFPELISTGYLTDKEVQAIKKDGSIIDIDISAVVDPIKNNGAIHAIAAL 411

Query: 517 NDITEQKKSLE 527
            DITE+    E
Sbjct: 412 KDITEEVHLRE 422


>gi|237653310|ref|YP_002889624.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera sp.
            MZ1T]
 gi|237624557|gb|ACR01247.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Thauera sp.
            MZ1T]
          Length = 1093

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 147/618 (23%), Positives = 274/618 (44%), Gaps = 22/618 (3%)

Query: 343  AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
            AW  I +  +   M     L     +  +       ++      +Q      + ++    
Sbjct: 489  AWGTIAVGVLTSAMLGALLLITTGNRRRIQA-----LVEHRTAELQAASVRLHENRAALI 543

Query: 403  DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            D +R       +    W+    RD +  + ++  +L   +G +   + + +  I    R 
Sbjct: 544  DAQRI------ARLGSWETLCARDGLHASDELHLLLDSTAGDL-NSLADLIDAIAPASRA 596

Query: 463  NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                 L+       GR+  +    +   +     I    +    G + R  G A D+T  
Sbjct: 597  ALTDALERAATEP-GRIMLDCNTDSLPMRTLQFRIEGEHV---GGRLRRIRGTAQDVTAL 652

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +++   I   A  D LTG+ NR ++ D    +L  +A  D+ R  V+ +D+D +K +ND 
Sbjct: 653  REAEARIRYLARFDPLTGLLNRSAWQDHAQDVLRHAARHDD-RCAVLFLDLDDFKTVNDS 711

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG A GD +L  +  R+G  ++  D++AR+ G+ F I+L    ++ + A  A  +  ++A
Sbjct: 712  LGHAAGDRLLAQVACRLGGCVRAEDLVARIGGDEFVILLSRLAHAEEPARVAERVLDALA 771

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P+ +  + + V ASIG A + +       +LK+A+ AMY AK  G N    F     + 
Sbjct: 772  RPLQIDSQPLRVGASIGIALYPADGGEIDTLLKHADTAMYEAKESGRNAYRFFLPEMTQR 831

Query: 703  DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                +  + +L  A+E+ +L L Y P I      + G EAL++W HP+ G +    F+  
Sbjct: 832  VTRRLQTEAELRKAIESGDLRLHYQPQIDAASGRVYGCEALVRWQHPERGLLPPDRFVPF 891

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AE+  +I  +  ++L       + WRD    PP+ + +NI++      +    +  ++ +
Sbjct: 892  AEQSGLIVPLGEWVLREACLQQVRWRDAGL-PPLDVAVNISALQFRRRDFVATVARVLGE 950

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            T   P+RI+L  +ES +M           +L  +G++L LDDFGT  S LSYL  +P   
Sbjct: 951  TGADPARIELEITESALMDATPELVASFDQLVALGLTLALDDFGTGYSSLSYLKRLPLRR 1010

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S + G     +  AI  + + +A+++   ++A+ +  E     L + GC  +Q  
Sbjct: 1011 LKIDRSFVDGLPDNPEDAAITSATLSLARDLGMEVVAEGVETEDQRGYLCKRGCRAMQGY 1070

Query: 939  HVASPLGFNSILKLLKER 956
              + PLG        +E+
Sbjct: 1071 LFSRPLGVEEFGTWFEEQ 1088


>gi|49477748|ref|YP_036640.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329304|gb|AAT59950.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 912

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 153/771 (19%), Positives = 301/771 (39%), Gaps = 54/771 (7%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 165 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGFAITD 220

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 221 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRDYFIINPTFGKKLLVI 279

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +                       I +   + ++  +  +        V ++I      +
Sbjct: 280 F-----------------PYLAVVILIGFTLKEQTSSSTLITGNCIAFVFVLIRHTIVRM 322

Query: 388 QHV-------LATGYFSQGIFSD--------------GERQSLAVLGSGDIVWDWDIVRD 426
           Q+        +      Q +                  ER         D +   D    
Sbjct: 323 QNKDLTETLKVFNSQLEQKVSQRTADLITKSNDLVINQERFKSLYEYHPDPILTIDSNGT 382

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      + +LG  SG + G            DR      L    G R      + RV+
Sbjct: 383 VLNINQAGSMLLGKNSGELIGKEC--FSIFLDEDRSELEAALQE--GKRCSSTSLQLRVK 438

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +               G       +  DIT  K+  + I   AF D +T I NR  
Sbjct: 439 NNNEKDIHFWCVTIVPIMIEGQTFGSYVMVKDITRMKQQQDKINYLAFHDTVTEIGNRIF 498

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L   ++ +         ++ ID++++K IND +G ++GD VL  + +R    L   
Sbjct: 499 FQQELEKSIERAQKTQG-EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPS 557

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             LAR+ G+ F +++ +     ++ +    + +    P  + +    ++ SIG A +   
Sbjct: 558 ISLARIGGDEFAVLVHNHT-EHQLMNLCETLFRITEEPFVVNQHSFYLSLSIGIAMYPFG 616

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724
            I ++ +L++A++AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y
Sbjct: 617 GINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLY 676

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P +     +++G EALI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  
Sbjct: 677 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKE 736

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + IN+++ +       + + ++I +     + I L  +E + M + + +
Sbjct: 737 WHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKET 795

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              L  L+  G+ L++DDFGT  S L+YL   P DT+K     +     +     I+++I
Sbjct: 796 LSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 855

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I +A  +   +IA+ +  +  +  L +  C  IQ  + + P   ++ +  L
Sbjct: 856 ISLAHTLNMKVIAEGVETKEQLTVLQQNACYLIQGYYYSKPANEDAFINFL 906


>gi|91784306|ref|YP_559512.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           xenovorans LB400]
 gi|91688260|gb|ABE31460.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           xenovorans LB400]
          Length = 769

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/569 (24%), Positives = 259/569 (45%), Gaps = 13/569 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +Q +    E   L V    + +         +   P    IL      +   I+  +  
Sbjct: 192 MAQRLAHSEEHHRLVVDHLIEGIVVQSRAGIVLACNPSAQRILRATPQIVGRSIQTVMVR 251

Query: 456 IHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILR 511
            +  D       +   +  +   +  L     +        W+   + P+  +   +   
Sbjct: 252 AYHEDGSVVTEAVRPTNQVLATGKPMLGVTIGLELIGGDIVWITENVVPIIKAGESEPSS 311

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---SATDDNLRPTV 568
            +    DI   +++   +   A +D+LTG+ NR    +RL  +  L   S   + +   V
Sbjct: 312 VLISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELVSVAV 371

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D +KK+ND  G   GD +L S+  R+   +   D LAR+ G+ F I++ +  N+ 
Sbjct: 372 LFVDLDGFKKVNDTAGHEAGDALLCSVAERLAACISPEDTLARVGGDEFVIVVSAYENTG 431

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  +   IA+P  + + E  + ASIG + +       + +L+NA+ AMY+AK RG
Sbjct: 432 HLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNADSAMYYAKQRG 491

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N+ + F     R  +    I++ L  A+  +EL LVY PI+   D   +G EAL++W +
Sbjct: 492 RNNFQFFTAELNRQLQRRFTIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYN 551

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            + GN+S  EF+ +AE+  +I  I  F+L R    +  WR     P + + +N++ +   
Sbjct: 552 SELGNVSPGEFIPVAEDAGLIVEIGNFVLTRACEQVAQWRRTLA-PELIVAVNLSPRQFN 610

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E +Q  + +T   P+ ++L  +E ++M + E    +L  L  +G+ +++DDFGT 
Sbjct: 611 D-GLVERIQRCLLQTGLEPAALELEITERLLMSDSETVLPMLSALNAMGVRISVDDFGTG 669

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   P   +K + S + G       IAI ++++ MA ++   + A+ +      
Sbjct: 670 YSSLSYLKRFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQA 729

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
             L  + CD  Q    + P+G ++  + L
Sbjct: 730 AFLRAIDCDKQQGYFYSRPVGASAYARSL 758


>gi|307822896|ref|ZP_07653126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307735671|gb|EFO06518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1171

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 132/574 (22%), Positives = 261/574 (45%), Gaps = 14/574 (2%)

Query: 389  HVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              L      +    + +R +      + + +   D  R+ +   P   +I G +   + G
Sbjct: 588  MRLRRDISKRKQVQEEQRMAASVFASTQEGILITDAQRNIIDMNPAFGSITGYSRDEILG 647

Query: 448  PIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               + L   +H  D   +  +  +    R+G  + E   R    +     + I  +++  
Sbjct: 648  KKPSLLKSGLH--DTSFYENMWRAI--NRQGYWRGEVWNRKKGGEIFAEWLTISAVADQQ 703

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G I  YIG ++DIT+ K+    +   A  D LTG+PNR    DR+      +  D N   
Sbjct: 704  GKITHYIGTSSDITQLKEQERKLELMAHYDPLTGVPNRILLADRMHLAFAQTKRD-NCLM 762

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             V  +D+D +K +ND LG   GD +L+ +  RI   L+  D +ARL G+ F  +L+    
Sbjct: 763  AVGYLDLDGFKPVNDRLGHEAGDQLLIEVALRIKNALREGDTIARLGGDEFVFLLLGLEK 822

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                      + + I+ P++L  + ++V+ASIG + +         +L++A+ AMY AK 
Sbjct: 823  VEDCETTLHRLLEVISEPVSLKNQAVSVSASIGISIFPEDNTDPDTLLRHADQAMYQAKQ 882

Query: 687  RGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G N    + +   R      +    +  A EN E  L + P + +    + G EALI+W
Sbjct: 883  EGKNCFHIYNLELDRQLHSHREALNRIEQAFENEEFELFFQPKVDMQQGIVFGAEALIRW 942

Query: 745  DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             HP+ G +   +F+ + E   +I  ++ +++++  + + +W+ Q     + I +N+ ++ 
Sbjct: 943  RHPERGLVMPGDFLPLLENHDIITRLDAWVIDKALQHMENWQSQGLQ--LQISVNVTARS 1000

Query: 805  LLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  ++    +     +     P+  +L   E+  + +   +  ++   + +G+   LDDF
Sbjct: 1001 LQTDDFILQLYYAFERHPSIKPAHFELEILETQALLDLSLTSQVIKDCQTLGVQFALDDF 1060

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S LSYL ++P +T+K + + +      E  +AI++ +I +A++    +IA+ +   
Sbjct: 1061 GTGYSSLSYLKHLPAETLKIDQTFVRNMLENEDDLAIVQGVIGLAESFRRQVIAEGVESI 1120

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 L +MGC + Q   +A P+  + +   + E
Sbjct: 1121 EHGSALLQMGCHHAQGYGIAKPMPASDLADWVNE 1154


>gi|297537599|ref|YP_003673368.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256946|gb|ADI28791.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera sp. 301]
          Length = 1321

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 140/613 (22%), Positives = 264/613 (43%), Gaps = 17/613 (2%)

Query: 352  IGLWMAITKRLDNDIIQP--ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD-GERQS 408
              L   +  +  + I       V         I        ++    ++ + +   E   
Sbjct: 686  FSLEFRMRHQDGSWIWVYDHGRVMERSADGAPIRVLGTHMDISKRKATELLANSNAELLR 745

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                 +    W+ ++    +  +  I  I  + +      I   + +  +  +      +
Sbjct: 746  RTSDMAKVGGWELNLATMSLYWSEGIKRIHEV-ADDYVPEITKVMNFYTLESKTRISAAV 804

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            ++ +         E  +  A     W+  +   + + NG ++R +G   DIT+QK + + 
Sbjct: 805  NNAIEN-GLSWDIELELITAKKNHKWVRAQGSAI-DENGKVVRLVGAFQDITQQKTAEDA 862

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            I   AF D LT +PNR+  +DRL   L  SA  ++    ++ ID+D +K +ND LG  +G
Sbjct: 863  IKQLAFYDVLTQLPNRRLLIDRLERALVSSARSESY-GALVFIDLDNFKTLNDTLGHDMG 921

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAM 643
            D +L  +  R+   L+  D +AR  G+ F ++L + +         +      +  ++  
Sbjct: 922  DALLKHVALRLQSCLRDCDTVARFGGDEFVVMLENLDLEPTAAKSHVEMVGAKIIHALNQ 981

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
               ++      T S+G   +     T  E LK A++AMY AK  G N +  F      + 
Sbjct: 982  SYEIVPDGHYSTPSLGATIFYGKNDTVDEALKRADIAMYQAKSAGRNCLRFFDPEIQANM 1041

Query: 704  R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 + E L   + N++  L Y P I      + G EAL++W+HPK G IS  EF+ +A
Sbjct: 1042 DTKASLVETLRYGIGNNQFVLHYQPQID-RAGVLTGAEALVRWNHPKQGLISPLEFIPLA 1100

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            EE+ +I  +  ++LE   + ++SW    +   + + IN++++          +  ++S T
Sbjct: 1101 EEMGLILPLGKWVLETGCKQLVSWAGSKDTEHLNLSINVSARQFHQPNFVAQVLDVLSAT 1160

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              +P R+KL  +ES+++ + +     +  L+  GI  +LDDFGT  S LSYL  +P   +
Sbjct: 1161 NVNPQRLKLELTESMLVDDMDDVIAKMTLLQSAGIRFSLDDFGTGFSSLSYLKQLPLFQL 1220

Query: 882  KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K + S +    S +    I R+I+ +A ++  ++IA+ +  E     L  +GC   Q   
Sbjct: 1221 KIDKSFVRDVLSDQNDAVIARTIVALASSLGLSVIAEGVEVEGQRDFLEGIGCYEYQGYL 1280

Query: 940  VASPLGFNSILKL 952
             + PL        
Sbjct: 1281 FSRPLSIEDFEDY 1293



 Score =  131 bits (329), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 2/197 (1%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-IQHVLATGYFS 397
             +  +       I +                       I  L  F+     ++     S
Sbjct: 545 YSLMGFESFIGLPILVDEQRYGLEFQSYQVHFNGFDATEIDFLHLFSRWAVSLIRRHNLS 604

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I    ER  LA+ G+   +WD D+   +       A +LG     +   +  ++  +H
Sbjct: 605 EQITKGNERLDLALKGASLGLWDLDVPTGKAFYNARWAEMLGYQLSEIEQSMDAFVKLLH 664

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIA 516
            +++D     +++           EFR+R  D  + W+    R M  +++G  +R +G  
Sbjct: 665 PDEKDEVLAAVEAHFKGETADFSLEFRMRHQDGSWIWVYDHGRVMERSADGAPIRVLGTH 724

Query: 517 NDITEQKKSLEGILCNA 533
            DI+++K +      NA
Sbjct: 725 MDISKRKATELLANSNA 741



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 30/219 (13%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++ A+   L     +IGF  I   ++     +  IF+   +   ++    D+VW  ++  
Sbjct: 282 VRLAVSAMLDEQGHIIGFIGIASDISERRNQENAIFTATSQLEASIEAIPDLVWMKNMKG 341

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEF 483
           + +         LG    ++ G            DR+        D     +   L  E 
Sbjct: 342 EFLRCNRSFERFLGSDKPNIIGKTDYDFF-----DRELAELFRSHDKKATNQDFPLITEE 396

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC------------ 531
            +   D  +    +    + + +G+++  +G+A+DITE+K     +              
Sbjct: 397 WLTFNDGYYGLFEVTKTGIKDIDGNLIGTLGMAHDITERKNIELKLRRKREAMQALNEIS 456

Query: 532 -NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             A             +  +L   L ++A    +   ++
Sbjct: 457 SQAIH---------TYYKQQLKEALAVAAKYLGMDIGIL 486



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 50/162 (30%), Gaps = 23/162 (14%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLA------VLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           V+  + A     Q ++   E    A      +  + D +         +T       +LG
Sbjct: 154 VMHLLEAKISSKQLLWLSDEMSKRAAFKKALLACAADSIISTTPEGIILTFNQAAERLLG 213

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTI-----LDSFVGYRRGRLQYEFRV--------- 485
                + G   +     H  D    R        +  +         + R+         
Sbjct: 214 YEQEELIG--LHTPAIFHDPDEIIARAADLSLEFNQTIAPGFEVFVSKARLGMADIHEWS 271

Query: 486 -RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
               +     + + +  M +  G I+ +IGIA+DI+E++   
Sbjct: 272 YIHKNGTRVPVRLAVSAMLDEQGHIIGFIGIASDISERRNQE 313


>gi|316932316|ref|YP_004107298.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315600030|gb|ADU42565.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 903

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 147/624 (23%), Positives = 267/624 (42%), Gaps = 30/624 (4%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I++           + R    ++        +++ +++   + Q         + +  D 
Sbjct: 294 IVMITTTTIEDALASWRTQTRLMVSVAAVSALVVTVILLLIINQIGKHHRATQERLKLDK 353

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHIND-- 460
           +R   A+      +  +D     V        + GL+S  +     +R+ L +       
Sbjct: 354 QRLDTAINNMSQGLLLFDAQARLVVCNRRYLDMYGLSSAIVKPGCSLRDVLEHRKATGSL 413

Query: 461 ---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               DN    L   +  R  ++     +         +     P+         ++    
Sbjct: 414 YGNVDNITADLIDKLSSR--KVSEVHSILDRS-----IEFSSVPVPGG-----GWVITHE 461

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE+ +  E I   A  D+LT +PNR  F  RL   L  ++        ++ IDID++K
Sbjct: 462 DVTERTRYAEKISYLAHFDSLTDLPNRSMFRQRLENELQRASR--GAPFALLYIDIDEFK 519

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG  VGD++L  +  R+ + ++  D +ARL G+ F II I+ + +  +      +
Sbjct: 520 NINDTLGHPVGDELLKQVAVRLRDCVRETDFVARLGGDEFAIIQIAVSGADDVTTLIERI 579

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +SI +P   L   ++  ASIG A          +++KNA+LAMY AK  G      F  
Sbjct: 580 YESIRLPYQCLGHHLSTDASIGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEP 639

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   R  ++ DL  AV      + Y P++ L    I G EAL++W HP  G IS +
Sbjct: 640 EMDAVAKARRQLEFDLRGAVGKRGFEIHYQPLVDLRSGAITGCEALLRWRHPSRGMISPA 699

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAE+  +I  I  + L     +   W        I + +NI+        L   + 
Sbjct: 700 EFIPIAEDTGLINEIGAWTLATACAEAAKWSA-----DITLAVNISPVQFRQPSLALLVA 754

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +++  +    +R++L  +E+V++ + + +   L +LR +G+ ++LDDFGT  S LSYL  
Sbjct: 755 SVLGASGLPANRLELEVTEAVLIHDDDAALSTLTQLRALGVRISLDDFGTGYSSLSYLQR 814

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      +   AI+++++ +A     T  A+ +  E   + L+ +GC 
Sbjct: 815 FPFDKIKIDRSFVDAIDTTDGSTAIVQAVVNIAAARHMTTTAEGVETERQREILSVLGCT 874

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            +Q    +  +   +  KLL    
Sbjct: 875 QMQGWLFSPAVPAPAFRKLLTSHL 898


>gi|148556869|ref|YP_001264451.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
 gi|148502059|gb|ABQ70313.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingomonas wittichii RW1]
          Length = 887

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 168/726 (23%), Positives = 309/726 (42%), Gaps = 39/726 (5%)

Query: 260 ALSSSLIIFLFMYL----HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
            +++ L +     L     W      +  +   G   +          P        + L
Sbjct: 65  IVAAGLWLLGRPALGGAGFWMIAAPLLAMLVAGGAIRLVARRGKGATAPERMHGFVAL-L 123

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWI---LIFIWFIGLWMAITKRL---------- 362
             +  +     +     G   +   + A     L+ +  +      T  L          
Sbjct: 124 GLVQGFGWSVWLLASATGLAPSRWALAAVAHGGLLVVTTLVFAPVPTAALALWLCLAIAA 183

Query: 363 -----DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA-VLGSGD 416
                   ++   +    V +V+L G +   +V +  + ++   +      L     SG 
Sbjct: 184 TVALGPWAVLALLVPLLAVAVVMLGGISERSYVASRRWLARAAVALKASLLLGEFEESGR 243

Query: 417 I-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-Y 474
              W+ D        +P IA  LGLA+  + G     L  +H           +  +G +
Sbjct: 244 GWFWETDDRGLISYISPQIAAALGLAADRLLGTPMTGL-VLHEAGDGAGSGAGERTLGFH 302

Query: 475 RRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              RL + E  VRAA +   W  +  RP  +  G+ L + G   D+TE ++S   +   A
Sbjct: 303 LATRLAFSEIAVRAAGDDVRWWSLSGRPAFDEYGNFLGFRGSGTDLTEMRRSEAEVKRLA 362

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+PNR      L   L   A     R  + ++D+D++K +ND LG  VGD +L 
Sbjct: 363 SYDSLTGLPNRILMRRTLDESLRDIAGRPK-RAALFMLDLDRFKMVNDTLGHPVGDALLR 421

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+  +++    + RL G+ F ++L       ++A  A A+ + ++ P  +    ++
Sbjct: 422 QVAVRLQRVVQQDGQVGRLGGDEFNVVLPGIVERNRLATLASAIIQQLSQPYLIDGAHVS 481

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           + ASIG A       T+  +++NA+LA+Y AK  G      +         DR +++ DL
Sbjct: 482 IGASIGIAIAPDDGATADALVRNADLALYAAKADGKGVHRFYEPEMHASAKDRRLLEMDL 541

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              +  S L+LVY P++    E IV  EAL++WDHP  G +S S+F+ +AEE+ +I  I 
Sbjct: 542 RGVMSESGLHLVYQPVVDAGSEAIVCFEALVRWDHPTRGAVSPSDFIPVAEEIGLIPQIG 601

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L     +  +W D     P+ + +NI+     +  L   + + ++     P R++L 
Sbjct: 602 EWVLRTACLEAANWPD-----PVRVAVNISPIQFANPSLPGIVLSALAAAQLPPHRLELE 656

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E V + +   +  +  RL+ IG+   LDDFGT  S L YL   PF+ +K + S + G+
Sbjct: 657 ITEGVFLNDDAATDAMFARLKAIGVRFALDDFGTGYSSLGYLKKAPFNKIKIDQSFVRGA 716

Query: 892 T---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +  AI+R+I+ +A+++E    A+      ++  +  +GC +IQ      P+  + 
Sbjct: 717 AVPGNRNAAIIRAIVALAESLEMETTAEGAETPDELALIRSLGCSHIQGYIFGRPMLSDE 776

Query: 949 ILKLLK 954
               + 
Sbjct: 777 ARARVA 782


>gi|89900801|ref|YP_523272.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89345538|gb|ABD69741.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 874

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 141/593 (23%), Positives = 260/593 (43%), Gaps = 11/593 (1%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           +     L+  L  ++  +        +     +  I +   +    +    D + +  + 
Sbjct: 268 NFFLSLLMAYLAWLLYEMRVRDQGLEVQVNERTAEILATQRQLQATLGAIPDPLLELGLD 327

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                        L   +  + G  R  +  +           L      +   +  + +
Sbjct: 328 GRCYNAHSSRTDSLPWPTEDLIG--RTIMELLPPQACQIVLAALQEA-KEKECSIGKQIK 384

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           V   +   HW  + +   S   G+   ++ +  DITE K++   I   A  D+LTG+PNR
Sbjct: 385 VPLDNG-MHWFEMSVTRKSALPGEEPLFLVLCRDITESKQAERKIQLLAHFDSLTGLPNR 443

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               DR    L  +  +       +++D+D +K +ND LG  VGD+VL++L  R+   ++
Sbjct: 444 VLLTDRCNLALSAAQRNGTPLAL-LLLDLDHFKNVNDSLGHRVGDEVLIALAGRLKGAVR 502

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D + RL G+ F ++L  E N+   A  A  + +S  +   L   E+TVT SIG A + 
Sbjct: 503 EQDTVCRLGGDEFILVLP-ETNAAGAAHIAEMLLQSALVAFELEPHELTVTPSIGIALFP 561

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722
                   + + A+ AMY AK  G N+   F           + ++  L  A+E ++L L
Sbjct: 562 GDGSDFDTLSRCADAAMYRAKKDGRNNYRFFTAEMQARSERTLTLENALRRALERNQLQL 621

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P I L    +VG EAL++W HP+ G +  +EF+ +AE   +I  I  ++L    + +
Sbjct: 622 HYQPQISLASGRVVGAEALLRWSHPELGAVPPAEFIPVAETCGLILPIGEWVLRTSVQQL 681

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W D   M PI + +N++S      +L E + +++++       ++L  +E+V M +P 
Sbjct: 682 KAWIDA-GMLPIALSVNLSSVQFRHADLPELVTSILNEAQLPAHLLELELTENVAMTDPL 740

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +  ++  L + G+ +++DDFGT  S LSYL       +K + S +          AI+ 
Sbjct: 741 GAIAVMNNLHERGVRMSIDDFGTGYSSLSYLKKFRVYKIKIDQSFVRDITEDSDDKAIVG 800

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +II MA ++    IA+ +  E  ++ L   GC  +Q  + + PL        +
Sbjct: 801 AIISMATSLGMQTIAEGVETEGQLEFLKAKGCTEVQGYYFSRPLPVEQFEAFM 853


>gi|110835552|ref|YP_694411.1| sensory box protein [Alcanivorax borkumensis SK2]
 gi|110648663|emb|CAL18139.1| sensory box protein [Alcanivorax borkumensis SK2]
          Length = 959

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 144/563 (25%), Positives = 277/563 (49%), Gaps = 12/563 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E+Q LA      + + ++  D     +        I G     + G          
Sbjct: 394 RQAQEQQRLAATVFENAPEGIFILDHKFRFLAVNTRFEQITGYTESLLIGRRILEEEGAQ 453

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            N R+ +  I  + +    G  + E   R  + + +   +++  + +    ++RY+G+ +
Sbjct: 454 AN-REIYLEITAALLDN--GFWEGEINERRRNGEIYPEWLQMSAVRDEQKRVIRYVGMMS 510

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T +K++ + +   +  D LTG+ NR  F + L   L L+  +   +  +++ID+D++K
Sbjct: 511 DLTARKETEQQLQFLSNYDRLTGLANRTQFREHLHKSLTLARLNRQ-KVALLMIDLDRFK 569

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IN+ LG  +GD +L +   R+ +     + LAR+ G+ F ++L +  +   I+     +
Sbjct: 570 PINESLGHEIGDRLLKAAAERMAQHAGGQESLARVGGDEFTLLLENHGSEGSISQQCQQL 629

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++  P  +   E+ + ASIG + +  +   +  M+  +++A+Y AK  GGN+ + +R 
Sbjct: 630 INAMKKPFLIDGHELLLGASIGISIFPDTAKEAQSMINQSDMAVYQAKRSGGNNFQFYRS 689

Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +      +++ ++  L  A+  +E  + Y P + L    I  +EAL++W HP  G +  +
Sbjct: 690 NMRVASVEQLALETSLRKAIFKNEFVVHYQPKMNLASNRITSVEALVRWQHPTMGLLPPA 749

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I AI   +LER  R    W+ Q     I + +N+++       + E + 
Sbjct: 750 DFIPLAEETGLISAIGELVLERSCRQAHKWQKQGLGE-ICVSVNLSAHQFRKGNVAETID 808

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++S T  SP  ++L  +ES++M + E++  LL +LR  G+ L LDDFGT  S LSYL  
Sbjct: 809 RVLSTTELSPHLLELELTESLIMEDMEQNIELLQQLRSRGVELALDDFGTGYSSLSYLKR 868

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P DT+K + S +          AI R+II MA +++  +IA+ +     +  L  M CD
Sbjct: 869 FPVDTLKIDRSFIMELDKNPDDAAITRAIIDMAHSLKMNVIAEGVETADHLSILRDMHCD 928

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            IQ   ++ P+  + +L+LL  +
Sbjct: 929 SIQGYLISRPVPESELLELLHTQ 951



 Score =  121 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 2/154 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   V +   A G  +  + +  ER  LA+  S   +WDW +       T +   +LG  
Sbjct: 253 LESMVQERTRALGETNTALAATSERLELALEASNIGLWDWMLDTGLNHHT-NFDRLLGYD 311

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           S        +    +H +D    R  + S       R    +R+R AD  + W+    R 
Sbjct: 312 SAYFKNFFGDLDTLVHPDDLARIRQAMVSHFKGEDPRYHAVYRLRHADGSWRWIEDEGRV 371

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  + +G  +R IG   DITE +++ E     A 
Sbjct: 372 VSRSESGRAIRMIGTRRDITEDRQAQEQQRLAAT 405


>gi|260220639|emb|CBA28380.1| hypothetical protein Csp_A06980 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 774

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 164/752 (21%), Positives = 309/752 (41%), Gaps = 40/752 (5%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF----LFMYLHWN---RWH 279
            +L  I+     L       S ELL+W A        +L  +       +   +      
Sbjct: 45  TMLANIASAGLILWTFSPDISWELLLWFAGILTVCLFALRSWRRSLGRQFTQASPGTIHK 104

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
           A    I   G+     +F           +IA +    I                    L
Sbjct: 105 ATWHAIVLGGVWAFIPVFWFPGASDSQQLTIATLLTGMIGAGGFVL---------NPLPL 155

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
              A++ +F       +  +       +  ALV     +V L   T  +  +A       
Sbjct: 156 ASVAYVTVFSASALAALWRSGNPAYSGV-AALVSVYAPLVTLAALTAWRKSMALINAESQ 214

Query: 400 IFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                +  S+ +      +GD +W+ D     V  +P +  +L ++   + G    W+  
Sbjct: 215 SQQQEQTISVLLSDFEQNAGDALWETDAAGRLVHISPKLCELLQVSEEKVSGN--TWMSI 272

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   D       L   +   +   + +   ++       + +  + + N  G    + G+
Sbjct: 273 LVPIDASGAV-TLSEALASGKPFKELQISFKSPSGN-RHIQLNGKALQNDEGAFSGWRGV 330

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+TE+ +S   +   A  D+LTG+ NR    + LT  +            ++ ID+D+
Sbjct: 331 VSDVTEKVQSTNLLRQLAHTDSLTGLTNRFKLREFLTEKVA-----GKHPLALLSIDLDR 385

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G +VGDDVL  + +R+ + L    ++ARL G+ F ++L+   +  +      
Sbjct: 386 FKAINDRHGHSVGDDVLRLIAQRLRQQLGPQTMIARLGGDEFAVVLVEPGDIQQAPTLGR 445

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   +  P+++  R +TV  S+G        +T  E++  A++A+Y AK  G     ++
Sbjct: 446 RVVHLLQEPLDISVRRLTVGGSVGLTISRGDVVTLDELMVQADIALYAAKDAGRGQCVAY 505

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                  ++    ++  L  A+   EL L + P + L   +IVG E L++W HP  G IS
Sbjct: 506 TPELGAVNQRRATLEYGLRKALHQQELQLYWQPKVDLKTWKIVGAETLMRWRHPVLGWIS 565

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAE+  MI A+  + L    R   S         + + +N++S  L D+     
Sbjct: 566 PGEFIPIAEQSGMIAALGSWALLEACRMHSSALA-----GLKVSVNVSSMQLRDDSFLSV 620

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q  + +   +P +++L  +ESV + + + +  +L  ++K G+ L +DDFGT  S LSYL
Sbjct: 621 LQDAMDEFQVNPGQLELELTESVFLESADHALAMLHAIKKTGVKLAMDDFGTGYSSLSYL 680

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFDT+K + + +    E     A++  I  +A+ +    + + +     ++ + R G
Sbjct: 681 RSFPFDTLKIDRAFVIELVEKKDAEAVVHMITGLAQTLGMRTVCEGVETPQQLEAIQRAG 740

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           CD +Q   VA P+     +   +E +   K T
Sbjct: 741 CDEVQGYIVAKPMPLQEFVVF-RENWDKTKPT 771


>gi|86747177|ref|YP_483673.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570205|gb|ABD04762.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 742

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 142/580 (24%), Positives = 244/580 (42%), Gaps = 36/580 (6%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L   G+   +    +     V          G +     G          
Sbjct: 180 ELKQREASFRLMFEGNPVPMIVCSLKDERIVAVNDAAVLHYGYSPAEFAGLTI------- 232

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512
                       + + +   +   E   R      AD     + +  R ++  NG+    
Sbjct: 233 -----RRLQAFGTELPWSGEQTNEERAARTWTHVKADGSLIDLAVYARQLT-YNGEPAVL 286

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DITE+K++   +   A  D LT +PNR     RL  +L  +    + +  V+ I 
Sbjct: 287 LALM-DITERKRAEMRLAFMAHHDGLTKLPNRSLLRKRLDELLAKTRRTGD-KIAVLFIG 344

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +ND LG A+GD +L  + RR+   L+  D LARL+ + F +I         +  
Sbjct: 345 VDHFKAVNDTLGHAIGDKLLRGIARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDVTL 404

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGN 690
            A  +  +IA P  L    +   ASIG A        S ++L NA +A+  AK   RG  
Sbjct: 405 LAKRLLNAIAEPYLLEGHSVVAGASIGIAVAPLDGDDSEKLLMNAGMALSRAKTDSRGSF 464

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                 + +    R  I+ +L  A+ +  L   Y P+I L    + G EAL++W HP+ G
Sbjct: 465 SFFEPDMDARAQSRRKIETELRAALRHEVLRPYYQPLIALSGGGVTGCEALVRWPHPERG 524

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S  EF+ +AE+  +I AI   +L    RD   W        I + +N++        L
Sbjct: 525 MVSPGEFIPVAEDTGLINAIGAQVLRAACRDAARWP-----GDISVAVNLSPLQFRVGNL 579

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   + ++   P R++L  +E++++    +    L  LR +G+ +++DDFGT  S L
Sbjct: 580 MATVMDALKQSGLPPRRLELEITETLLLEKSSQVIATLHALRALGVRISMDDFGTGYSSL 639

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   PFD +K + S + G ++ R   AI+R+II +   +  TI A+ +  E ++  L 
Sbjct: 640 SYLRSFPFDKIKIDQSFVRGVSDNREAQAIVRAIISLGMGLGVTITAEGVETEAELNWLR 699

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER------FPLVKN 962
             GC   Q    +     + +  LL  +      FP+  +
Sbjct: 700 AEGCHEAQGFLFSPARPNDELRDLLDRQGTAGGAFPVSAS 739



 Score = 42.2 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 40/155 (25%), Gaps = 13/155 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V     A            ER   A+      +   D     +      A I   ++ 
Sbjct: 44  AAVADRERAVAVALDEARKSHERLREAIDILPQGIVFLDSEGRYILWNKRYAEIYKASAD 103

Query: 444 SMHGPIR---NWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMII 497
                 R        +   D        + ++  R  RL    +      AD +   +  
Sbjct: 104 LFKPGARIEDTMRVGVARGDYPEAVGHEEEWIAERMRRLFDPGHSHEQVLADGRCIRIEE 163

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           R      S+G     IG+  DITE K+        
Sbjct: 164 RTT----SDG---GVIGLRVDITELKQREASFRLM 191


>gi|328543003|ref|YP_004303112.1| diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with PAS
           sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; membrane-associated
           protein [polymorphum gilvum SL003B-26A1]
 gi|326412749|gb|ADZ69812.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 980

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 149/664 (22%), Positives = 271/664 (40%), Gaps = 39/664 (5%)

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
                 +   +  L     I+  G++      LL      I +                 
Sbjct: 332 ATFAIHLLAGAASLTCAIAIVVFGIRVVRPIELLTAHIRRIQVSERHDVPIPAGLCARRD 391

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
               L      +   +     + +  +      +    ER S A+      +   D  R 
Sbjct: 392 EIGVLASSFAAMTRSLEEARQRLLQESRA---EVRQQFERLSSAIESIPQGILLTDASRK 448

Query: 427 RVTTTPDIATILGLASG-SMHGPI---------RNWLPYIHINDRDNFRTILDSFVGYRR 476
            +    +   + GL  G  + G           +N    +   D+      L+ F+  ++
Sbjct: 449 VILCNENFRKLYGLDDGREIVGQPVADVIRACLKNGASVLDEPDQSKLLR-LNYFLDGQK 507

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                       + +   ++          G     + +  DITE+++  E I   A  D
Sbjct: 508 A--------LDLNGERTVVVTAG---VTPEG---GTVSVHEDITERRRQEERIAHLAHHD 553

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+ NR  F +     L        L      ID+D++K +ND LG   GD +LV + 
Sbjct: 554 ALTGLANRVLFREEACEALLRRRKARRLALL--YIDLDQFKAVNDTLGHPTGDRLLVEVA 611

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +R+   +   D +ARL G+ F I+L     +   +  A  + ++I +P  +    I V A
Sbjct: 612 KRLRAAVGRHDHVARLGGDEFAIMLAGNPRAEDASAAADRLIETIRIPYEVDGNFIVVGA 671

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLA 714
           S+G A        +  ++K+A++A+Y AK  G N    F        +    ++ DL  A
Sbjct: 672 SVGIAMAPDDGTDADVLMKHADMALYRAKQDGRNTYCFFESDMDARMQARRELELDLRKA 731

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E  E  L Y P+  +   E+VG EAL++W HP  GN+S ++F+ IAEE  +I  I  ++
Sbjct: 732 LEGGEFALHYQPLFDIGSHEVVGFEALLRWTHPVRGNVSPADFIPIAEETGLIGEIGSWV 791

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++   R+  +W        + + +NI+        L   + A ++ +   PSR+++  +E
Sbjct: 792 VKEACREAATWPK-----DVRVAVNISPVQFRTRTLMLDIMAALASSGLLPSRLEIEITE 846

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
            V++ + + +  +L  LR++GI + +DDFGT  S LSYL    FD VK + S +    E 
Sbjct: 847 GVLLQDTDATLGVLEDLRRLGIRIAMDDFGTGYSSLSYLRKFNFDKVKIDRSFIQDIGED 906

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               A++R++  +  ++  T  A+ +  E  ++ L   GC   Q      P+     ++L
Sbjct: 907 AESRAVIRAVTSLCLSLGITTTAEGVETEDQLRALKAEGCTQAQGFLTGRPMPAADAVRL 966

Query: 953 LKER 956
           L+ R
Sbjct: 967 LQGR 970


>gi|254490929|ref|ZP_05104111.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxidans DMS010]
 gi|224463838|gb|EEF80105.1| hypothetical protein MDMS009_1262 [Methylophaga thiooxydans DMS010]
          Length = 1084

 Score =  502 bits (1294), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/536 (24%), Positives = 246/536 (45%), Gaps = 9/536 (1%)

Query: 424  VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
             R  V        + G     + G     L                          Q E 
Sbjct: 550  DRQFVRVNEKFEELFGYTRDDIEGQSVQCLYLNEDAYLQFGEEAYHQLTSGDNYEAQLE- 608

Query: 484  RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             +   D Q  W  I  + + ++       I +  DIT Q+++ E +   A  D LTG+PN
Sbjct: 609  -MVRKDGQVFWCGISGKAI-DAGSPKAGTIWLFEDITIQRQNEEHLTRLASIDGLTGLPN 666

Query: 544  RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
            R  F DR+   +  S  +   R  V  +D+D +K IND LG   GD +L  +  RI   +
Sbjct: 667  RAVFTDRVEHAIHKSMRNSG-RLAVFFLDLDHFKHINDSLGHKAGDILLTEVAGRIKACV 725

Query: 604  KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
            +  D +ARL G+ F ++L    ++  +   A  + KS+  P  +   E+ ++ SIG + +
Sbjct: 726  REGDTVARLGGDEFTLLLEDVRSAEYVGKVAEKVIKSMTQPYQIENTEVNISPSIGISLY 785

Query: 664  TSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELY 721
             +       +++NA+ AMYHAK  G N+ + +   +++  + R+ ++  L   VE  +L+
Sbjct: 786  PADGRDVDMLVRNADAAMYHAKKVGRNNFQFYSAEMNAEAAKRLAMETALRRVVEQQDLH 845

Query: 722  LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
            L Y P + L   ++VG E L++W   +WGN+S +EF+ + E+  MI  +  ++L +    
Sbjct: 846  LHYQPQVNLQTGKLVGAEVLLRWQSEQWGNVSPAEFVPMLEDTGMITQVGEWILRQACAT 905

Query: 782  IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             + W ++       + +N++ +      L   ++ L+ +T    + ++L  +ES++M + 
Sbjct: 906  YLEWSERLPD-NFMMAVNLSGRQFKGGSLAAFIRRLLDETGMPAAHLELEITESMLMDDT 964

Query: 842  ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899
            E + + L  L  + ISL +DDFGT  S LSYL   P + +K + S +    S +   AI+
Sbjct: 965  ELATITLAELSAMNISLAIDDFGTGYSSLSYLKQFPLNVLKIDSSFVRDVTSDKDDAAIV 1024

Query: 900  RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +I+ M+ ++   ++A+ +      + L R  C   Q    +  +  +    L+ +
Sbjct: 1025 DAIMAMSNSLGLKVVAEGVETAEQRQYLLRHDCRLAQGFLFSKAVDKDKFSTLIDQ 1080



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q +       + + +  +     + G  + +   D+      T P    I      ++ G
Sbjct: 395 QLITELAQAKESLENREQHILAILNGVPEAILTLDVNGKIEQTNPAAERIFHATENALVG 454

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +   + H     +F  I++     +      EF  +  D     M++ +  +  + G
Sbjct: 455 ENIS-RFFAHSETVTSFNDIIEQAAEGK------EFDGQRYDGSDVSMVLSLSQIRAAKG 507

Query: 508 DILRYIGIANDITEQKKSLEGILC 531
           ++  ++ +  DI+ +K++   +  
Sbjct: 508 EV--WVCVITDISTRKRTELQLQQ 529


>gi|229156115|ref|ZP_04284214.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228627436|gb|EEK84164.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 785

 Score =  502 bits (1294), Expect = e-139,   Method: Composition-based stats.
 Identities = 161/754 (21%), Positives = 304/754 (40%), Gaps = 20/754 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    S+  
Sbjct: 38  ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +  H  +  +       +  +  ++   P   +S     + +        +I
Sbjct: 94  YLYFYLQDDLSHRSLILLRCLYRVFLLFI-AIAATIPRSASSRRNYFIINPTFGKKLLVI 152

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + +     +    L   L +    + 
Sbjct: 153 FPYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRMQNKDLTETLKVFNNQLE 212

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            TV Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 213 QTVSQRTRDLINKSNDLIKNQERFKSLYEYHPDPILTIDSNGIVLNINQSGSMLLGKESA 272

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+    + +          LQ   +     +   W  + I P+ 
Sbjct: 273 ALIG--EECFSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 329

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT+ K+  E I   AF D +T I NR  F   L   +  +    +
Sbjct: 330 -IEGQAFGSYVMVKDITKMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTKD 388

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F II+ +
Sbjct: 389 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPSLPLARIGGDEFAIIVHN 447

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 + D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 448 RTEKQ-LLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 506

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++G EAL
Sbjct: 507 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKVGKVIGAEAL 566

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + + IN++
Sbjct: 567 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GFSNLKMGINLS 625

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    +  + + + I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 626 AIEFEQKDFVKIIISTIGEIGVPANSIDLELTERIAMVDEKETLAKLKALKSYGVHLSID 685

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +   G +     I+++II +A  +   +IA+ + 
Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGISTDGDEIIQTIISLAHTLNMKVIAEGVE 745

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +  L R  C  IQ  + + P+  +  +  L
Sbjct: 746 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFINFL 779


>gi|188582142|ref|YP_001925587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179345640|gb|ACB81052.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 950

 Score =  502 bits (1294), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/567 (24%), Positives = 257/567 (45%), Gaps = 23/567 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454
              +     +   A+      +  +D     +        +LGL +G +     +R    
Sbjct: 391 EDQLKRSNSQLDAALSNMLQGLCLYDAAGGLLVYNRRFCDMLGLDAGELRTGMSLREVAR 450

Query: 455 YIH--INDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +    ND   F  +++   + +R         +R  D      I+ ++    + G    
Sbjct: 451 LVETTSNDGSAFGLLMEQQALLHRGVSGSLCCPIR-KD-----CIVSLKQQPTAEG---G 501

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I    D+T++ ++   I+  A +D LTG+ NR  F +RL                 + +
Sbjct: 502 WIATYEDVTQRYEAEARIITMARRDALTGLANRMVFGERLEEAAARLEDGSGAGFATLCL 561

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K++ND LG  VGD +L S+  R+   L+  D++ARL G+ F I+    +     +
Sbjct: 562 DLDRFKEVNDTLGHPVGDGLLRSVAERLQSCLRETDLVARLGGDEFAIVQAGTHARQDAS 621

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  +   P  L    +TV  SIG +       +  ++LK+A+LA+Y AK  G   
Sbjct: 622 ALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGRGC 681

Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F          R  ++ DL  AV N E  LV+ PI++L  + I   EAL++W HP+ 
Sbjct: 682 WSFFEEEMDLELRKRRAMESDLRTAVGNGEFELVFQPIVKLDRQRIATCEALLRWRHPER 741

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S +EF+ +AEE   I  I  ++L +   +   W        I + +N+++    +  
Sbjct: 742 GYVSPAEFIPLAEETGSICEIGEWVLRKACSEAAKWP-----GGIGVAVNVSAVQFKNAA 796

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           +   +   ++ +     R++L  +ESV++ +   +   L  L+++G+ + +DDFGT  S 
Sbjct: 797 VVRAVMEALTASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGTGFSS 856

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PFD +K + S +    E      I+RS++ + +++  T  A+ I  E  +++L
Sbjct: 857 LSYLQSFPFDKIKIDQSFVRNLGETGNARLIVRSVVGLGRSLGITTTAEGIETEAQLEQL 916

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954
              GC+  Q    + P+   +I +L+ 
Sbjct: 917 RLEGCEEGQGYLFSRPVPSATIRELVS 943


>gi|167622481|ref|YP_001672775.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352503|gb|ABZ75116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 694

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 141/567 (24%), Positives = 265/567 (46%), Gaps = 35/567 (6%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  D +  S  +  +   ++  D     +   P  A +LG +               H +
Sbjct: 124 LKDDLQLLSAILDSTAVAIYAVDNKGLCIFANPQCALLLGYS---------------HPS 168

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRA-----------ADNQFHWMIIRIRPMSNSNGD 508
                ++ +   V  R      E  ++            AD     +    +P++  N  
Sbjct: 169 --QLLKSNMQQLVNQRAESPNTESSIQDLENIKEDIFWKADGSSFPVEYNSQPLT-LNSH 225

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +   +    D +E++++ E I   A  D LT +PNR   L RL  +++ S     +   V
Sbjct: 226 VNGAVISFYDNSERREAEELIRRQAHYDTLTDLPNRFLALKRLEQLVESSERSGKM-LAV 284

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D +KKIND LG   GD +L++ + R+ +  +  D + RL G+ F I+L   +++ 
Sbjct: 285 IFLDLDDFKKINDSLGHEAGDLLLITASERLLKTTRAEDTVGRLGGDEFIILLDGLSSAN 344

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  +      P  +  R++ +TASIG A + +   T SE+L+NA+ AMYH K  G
Sbjct: 345 DAQPIAENLIGGFRKPFYIDNRQLILTASIGIAIYPNDGETPSELLRNADSAMYHTKSIG 404

Query: 689 GNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F  +  +     +  +E +  A+E  E+ + Y   + + D  I+G EAL++W++
Sbjct: 405 RNTYSYFTHAMNKEVSRRLAIEEQIHGALERGEIRVHYQIQLDIRDGSIMGAEALLRWNN 464

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G++S +EF+ IAE+  MI+ +  F+L++       W+ + N     + IN++ +   
Sbjct: 465 PTLGSVSPAEFIPIAEQTGMIEPMGEFVLQQALETAHIWQRKFND-KFRVAINLSPRQFR 523

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +L + +   + K    PS ++L  +E V++     +   L +L + G  +++DDFGT 
Sbjct: 524 NPKLVQTIIDKVEKLGMHPSDLELEITEGVLLSGHAYTLGALMQLSEAGFYISMDDFGTG 583

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PF  +K + S +    +   +  ++ + I MA  +   +IA+ +  +  +
Sbjct: 584 YSSLSYLKTYPFTILKIDRSFIHDMNKDDKSNDLIIATIEMAHALGIRVIAEGVETQEQL 643

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
            EL+ M CDY Q   ++ P+    +LK
Sbjct: 644 DELSFMMCDYAQGFLISKPVPLKELLK 670


>gi|90021869|ref|YP_527696.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89951469|gb|ABD81484.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 820

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 259/592 (43%), Gaps = 13/592 (2%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LV     +   V   +         +    E     +      V   +     +     +
Sbjct: 218 LVASTNQLLDAVDLALAKRRAVEVVLRKSEEHVRQIIDSLPVWVGARNKDGHYIFANQAL 277

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           A  L     +M G   +      + D      +    +  R     +E +    D +   
Sbjct: 278 ADFLHTKPDAMRGSHISDFAEFFVTDPQQIIDLDAEVIKSRISAQIWEEKWITNDGEERD 337

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           M   + PM   +  +   +   +DITE K++   +   A+ D LT +PNR   ++RL   
Sbjct: 338 MHTHVMPMEFYDEVVSLVVS--SDITELKRTQAQMEHMAYHDALTDLPNRSYLVERLEEE 395

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +         ++ ID+D++K IND LG   GD VL  + +R+  + K  D++ RL G
Sbjct: 396 VRKAN-HGQYYGALLFIDLDQFKYINDSLGHPAGDGVLKHVAQRLTAVTKENDLVVRLGG 454

Query: 615 NRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           + F ++L +  + L     +  D    +R+ I+ P    + ++ VT S+G   +      
Sbjct: 455 DEFVVVLTNLGDELPTSILRAEDIGERLRRYISEPHFYNDLQLHVTCSVGIVMYPEEDAG 514

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
             E+L+ A+ AMY  K +G + ++ F   ++    + ++++ DL  A+E     L Y P 
Sbjct: 515 VHELLRYADTAMYQVKEQGRDAIQFFNKYMADKARNVLVMEGDLHKALEQHRFSLYYQPR 574

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + +   +IVG EAL++W+HP  G IS +EF+ I E   +I  +  ++LE   R +  W++
Sbjct: 575 VDVTTSQIVGAEALLRWEHPDRGMISPAEFIPILETSGLIVEVGRWVLEDSIRQVKIWQE 634

Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           Q      + + +NI+ +    +E    +  ++ +   +PS I++  +E +V+ N E +  
Sbjct: 635 QGIWKDDMRLGVNISPRQFRSSEFVNDVTKILQEVGINPSLIEMEITEGIVIHNLEETVA 694

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            +  L ++GI+  LDDFGT  S +SYL  +P   +K + S +           ++ +I  
Sbjct: 695 TMSSLCELGINFALDDFGTGYSSISYLKQLPVAILKVDQSFVRDITFDRNDRVLVETISA 754

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           M   +   ++A+ +     +  +    C Y Q    + P+  ++  +LL  +
Sbjct: 755 MGNMLGLDVVAEGVETCDQLHLVREYNCKYYQGYLCSPPVNADAFAELLTTK 806


>gi|171059398|ref|YP_001791747.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170776843|gb|ACB34982.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 720

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 146/597 (24%), Positives = 281/597 (47%), Gaps = 28/597 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    ++H+L T      +     + + A   +    ++W      +   P+   +LG  
Sbjct: 120 LLAGRLRHLLRTARIQLELLRSRSKLARAQDLARMGSFEWRGDSAGLMLEPEALRVLGHG 179

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G  R     +  N+R    + L   V +    L  +  V   D++   + I   P
Sbjct: 180 PHDHLGLRRLLRSLV-ANERAGVCSRLREVVRHSTV-LDTDVNVVMPDHRQRIIHIEAEP 237

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N +G+++ Y GI  D+T+++   + I   A  D LTG+PNR+  + R    L+ +   
Sbjct: 238 EFNEHGNVVGYAGILQDVTDRRLIEDKIRHLANFDALTGLPNRRQLIWRAERALEHARRL 297

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI------------- 608
            +    +++ID+D++K IND LG  VGD++L+ + RR+   ++  D              
Sbjct: 298 GH-PCALLLIDLDRFKVINDTLGHGVGDELLMEIGRRLRSCVRHSDQLADMSIDATLLRS 356

Query: 609 ------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                 +ARL G+ F  +L    +  +  + A  + +++  P+ L   E  VTAS+G A 
Sbjct: 357 HRSLEAVARLGGDEFVTLLPEVADEPEALETAQRILEAMRAPVVLGGAEYFVTASVGLAM 416

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSEL 720
           +    I+  ++L+NA++AMY  K  G N+V+ F+        +++ ++  L  A+E  EL
Sbjct: 417 FPRDGISVVDLLRNADMAMYAVKDSGRNNVKVFQPQMSGKGREKLELESALHKALERGEL 476

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P + +    +VG+EAL++W H     +   +F+ +AEE  +I  I+ + +    R
Sbjct: 477 VLHYQPKVDVARGRLVGVEALMRW-HRNGELVPPGDFIPLAEETGLILPISEWAMREATR 535

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I SWRD A    + + +N+ S+      + + +    +      S ++L  +E+ +M  
Sbjct: 536 QIRSWRDSAG-LDLKVAVNLPSRSFERGNVLDHIHEAAAAHDVPLSSLELEITETSLMKG 594

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898
            +    +L RL + G+ +++DDFGT  S LSYL  +P   +K + S +          A+
Sbjct: 595 LDEVMPMLHRLTQHGVGISIDDFGTGYSSLSYLTQLPISELKIDRSFVQRLDRTGGSSAV 654

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +II +A +++  ++A+ +  E     L R+GC  +Q    + PL  + +++ + E
Sbjct: 655 VTAIIALAHSLKLKLVAEGVENEYQRDVLLRLGCHTMQGFLFSQPLPPDEVVRWVTE 711


>gi|302188295|ref|ZP_07264968.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 730

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 153/584 (26%), Positives = 271/584 (46%), Gaps = 26/584 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V        + G ++  + G   +   
Sbjct: 154 AQIALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFTRLTGFSAEEVLGRTAHEVG 213

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +    R++    L      +      E   R        + I +  ++ +N    
Sbjct: 214 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 264

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI   K +   I   A+ D LTG+PNR   LDRL+  + L     NLR  ++ 
Sbjct: 265 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 323

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++     S   
Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDQ 383

Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               + + A  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y AK
Sbjct: 384 VTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 443

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +   +E I G EAL++
Sbjct: 444 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 503

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L    +       Q  +P     + +NI+
Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKIGGLLLRQGLIPENKFLMGVNIS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L ++  E ++  ++      S +KL  +E +V+ N + + L +  L+ +G+S  +D
Sbjct: 564 PRQFLQHDFIERVERSLTLNQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 623

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +    +      I+R+I+ MA+++   +IA+ + 
Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVE 683

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
               +  L R+GC   Q    + PL       LL+ + P  +  
Sbjct: 684 TSEQLAFLERVGCYTYQGYLFSEPLPGPQFESLLELKRPAQQTA 727



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                L      + +    +R  LA+  +    WD DIVR+R+  +   A + GL +  +
Sbjct: 16  SASARLPLTDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGLPALPV 75

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 +   +   +R   R I    +   +  LQ  +R +  +     +  R R   N 
Sbjct: 76  DESGGQFFGSLPGEERRRMRAIYAVALETGQDCLQVTYRFKLKNGASRLLEGRARIYRNE 135

Query: 506 NGDILRYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539
            G  +R  G   DIT+Q      ++ E     AF    D++T
Sbjct: 136 QGQPVRLSGTLMDITQQCAQIALEASEEKFAKAFHSSPDSIT 177


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 130/433 (30%), Positives = 228/433 (52%), Gaps = 5/433 (1%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            ++ + I   A+ D LT +PNR  F  +L  +++ S      +  V+ +D+D++K +ND L
Sbjct: 1046 RAEKDIHQLAYHDVLTNLPNRTLFHKQLGGVINRSHLRGE-KFAVLFLDLDRFKLVNDTL 1104

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G  VGD +L +   RI   L+  D++ARL G+ F +IL    +    A+ A  +   ++ 
Sbjct: 1105 GHEVGDLLLKAAADRIVGCLRSKDMVARLGGDEFTVILEQIESPRIAAEVAAKICSVLSK 1164

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
            P     +E+ +  SIG + +      +S ++K+A+ AM+ AK +G ++    R + +   
Sbjct: 1165 PFVFSGQEMYIGTSIGISLYPDDGEDASMLIKHADTAMFRAKEQGNSYQFYERGMETAAV 1224

Query: 703  DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             R+ ++ +L  A+E +E  L Y P I L   EI  LEALI+WDHP+ G I  SEF+ +AE
Sbjct: 1225 KRLGLEAELRRALEKNEFTLYYQPQIDLGTGEITTLEALIRWDHPEHGLIPPSEFIPLAE 1284

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            E  +I +I +++L      + SW  +    P  I +N++ ++L   EL + +  ++ +T 
Sbjct: 1285 ETGLIASIGVWVLREACTQMRSWLQREFG-PFRIAVNVSGRELEREELIDKIVTILKETD 1343

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  ++L  +ESVVM           RLR++GI L +DDFGT  S L+YL   P D +K
Sbjct: 1344 VPPKWLELEITESVVMKRASAVIPKFHRLREMGIKLAIDDFGTGYSSLNYLKSFPVDILK 1403

Query: 883  FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +   +    +     AI++ II +A ++   ++A+ +  +   + L    CD +Q  ++
Sbjct: 1404 IDRCFIHDVVNNPDDAAIIKGIIALAHSLRLKVVAEGVESQAQEEFLKEHQCDRLQGFYL 1463

Query: 941  ASPLGFNSILKLL 953
            + PL    I + L
Sbjct: 1464 SEPLSAAEIEQAL 1476


>gi|288960789|ref|YP_003451129.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288913097|dbj|BAI74585.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 875

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 161/678 (23%), Positives = 295/678 (43%), Gaps = 21/678 (3%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
                +     +         + ++++           +      L         +    
Sbjct: 202 LTAATLDDIEALQRLMAVGGGMIAVLVLGLAGAAVWFTRSRIVGPLGRLVEDARRLARRD 261

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF-------SQGIFSDGER 406
           L               +  G     + L+G ++    +A           S+ +     R
Sbjct: 262 LDRPFQGWSKGRGAGASFAGFRQDELGLLGRSLEDSRVALRGLFAAIEEKSRRLGESERR 321

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            ++A   + D +WDWD+    +  +P +  +L L +      +   L +IH +DR    +
Sbjct: 322 YAMAAAATNDGLWDWDLDSGELYLSPRLRQMLHLPADGGEPGLAALLAHIHSDDRHAVLS 381

Query: 467 ILDS-FVGYRRGRLQYEFRVRAADN----QFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +              EFRV   D        W+ +     ++  G + R  G A DI++
Sbjct: 382 AIRQGERSVDGASFDVEFRVLPPDRMREEHVGWVHLHGIVAADPGGRVARLAGSAADISD 441

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K     ++  A  D LTG+PNR   +  L     +S          + +D+D +K +ND
Sbjct: 442 RKSYEARLVHQATHDFLTGLPNRAFLVRWLHDRQAVSDGGQGDLAL-LFLDLDGFKVVND 500

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG AVGD +L++   R+   L+  + +ARL G+ F +++            A A+  + 
Sbjct: 501 SLGHAVGDRILIATAERVAAALEPGEFVARLGGDEFVVVVP--AGREVAIARARALESAF 558

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+     E+ V  SIG A    +      +L++A++A+Y AK  G      F  S   
Sbjct: 559 QRPLGAGGTELRVGLSIGLAVDDGTSDDPEGLLRDADIALYRAKEHGKGRTVLFDASLRE 618

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +  +   ++ DL  ++E  +++LVY PI+ L D  + G EAL++W HP  G +S ++F+ 
Sbjct: 619 AILIRSRLQRDLTPSLEAGDIFLVYQPIVALSDGRLTGFEALVRWRHPDLGLVSPAQFIP 678

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE   I  +   +LER    +  WR  A    + + +N++++ + D    + M   ++
Sbjct: 679 IAEETGQILPLGRHVLERAVAQLARWRGMAGGGALTVNVNLSARQMWDERYVDDMLDFLA 738

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   +K+  +ES+ + + +++R +L R   +GI+L +DDFGT  S LS+L  +PFD
Sbjct: 739 DGR--ADGLKIEVTESMTVTDHDQARAILERFHALGIALCMDDFGTGYSSLSHLSRLPFD 796

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++  GS  ++ ++LR I+ +A  I   ++A+ I  E +   +TR+GCDY Q 
Sbjct: 797 VMKIDKSFISALGSDPRQESLLRGIVDLAHRIGLEVVAEGIETEEERAVVTRIGCDYAQG 856

Query: 938 SHVASPLGFNSILKLLKE 955
              A PL       LL  
Sbjct: 857 YLFARPLSVADAEALLTA 874


>gi|229119018|ref|ZP_04248360.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228664409|gb|EEL19908.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 800

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/759 (21%), Positives = 311/759 (40%), Gaps = 30/759 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 53  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 108

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 109 YLYFYLQDDLSERTVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 168

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 169 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 222

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 223 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGTVLNINQAGSMLL 282

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 283 GKDSAALIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 339

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G I     +  DIT  K+  + I   AF D +T I NR  F   L   +  +
Sbjct: 340 IVPIM-IEGQIFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 398

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 399 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 457

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I  + +L++A+
Sbjct: 458 IIVHNQT-EQQLLDLCKTLFRITEEPFIVNQHSFYLSLSIGIAVYPFGGINITTLLQHAD 516

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 517 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 576

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 577 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHS-TGFSNLKM 635

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + M + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 636 GINLSAIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMIDEKETLSKLKALKSYGV 695

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 696 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 755

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L
Sbjct: 756 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFL 794


>gi|323526658|ref|YP_004228811.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323383660|gb|ADX55751.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/625 (22%), Positives = 270/625 (43%), Gaps = 29/625 (4%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
              +    A+  R             L  I   +G  V Q  +A     Q + +  E   
Sbjct: 158 AGVMLGAFAVYYREPRRPTPQEET-MLRDISRSVGLAVHQDAMA-----QRLANSEEHHR 211

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHI-------ND 460
           L V    + +         +   P    +L      +   IR   +   H        ++
Sbjct: 212 LVVDHLIEGIVVQSREGVVLACNPSAQRMLRTGPQIVGRSIRTVMVRGFHENGSPVTEDE 271

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDI 519
           R       +  +   +  L     +     +  W+   + P+           +    DI
Sbjct: 272 RPT-----NQVLATGKPMLGVTLAIELVSGEVIWITENVVPILKPGQSKPDSVLISFTDI 326

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN---LRPTVMVIDIDKY 576
              +++   +   A +D+LTG+ NR    +R+ ++      D         V+ +D+D +
Sbjct: 327 GPVREAQRQLKFLATRDSLTGLYNRAYLTERMNSLFAPGGPDGTGELASVAVLFVDLDGF 386

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L S+  R+   +   D LAR+ G+ F I++ + + S ++   A  
Sbjct: 387 KKVNDTAGHEAGDALLKSVAGRLAGCVGPDDTLARVGGDEFVIVVSACDCSERLIALARH 446

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   IA+P  + + E  + ASIG + +      +  +++NA+ AMYHAK RG N+ + F 
Sbjct: 447 ILDEIAVPFAVADNEYYLGASIGISRFPDDGQDAPTLMRNADSAMYHAKQRGRNNFQFFT 506

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +  +    I++ L  A+  +EL LVY PI+   D   +G EAL++W + + GN+S 
Sbjct: 507 AELNQQLQRRFLIEQSLRRALAGNELSLVYQPIVDSQDGRTIGAEALLRWYNSELGNVSP 566

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ +AE+  +I  I  ++L         WR     P + + +N++ +   +  L E +
Sbjct: 567 AEFIPVAEDAGLIAEIGEWVLAHACEQAAHWRRTLA-PELIVAVNLSPRQF-NEGLVERI 624

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  + ++   P+ ++L  +E ++M + +    +L  L   G+ +++DDFGT  S LSYL 
Sbjct: 625 RRCLDQSGLEPAALELEITERLLMSDSDTVLPMLLALSATGVRISVDDFGTGYSSLSYLK 684

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P   +K + S + G       IAI ++++ MA ++   + A+ +        L  + C
Sbjct: 685 RFPLHNLKIDRSFVAGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETPEQAAFLRSIDC 744

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
           D  Q    + P+G ++  + L + +
Sbjct: 745 DKQQGYLYSRPVGASAYARALADAY 769


>gi|153873128|ref|ZP_02001812.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152070406|gb|EDN68188.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 565

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 141/542 (26%), Positives = 249/542 (45%), Gaps = 46/542 (8%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           Y+H      F T L++    +     +E++    D +  W+   +R + ++NG I  Y G
Sbjct: 22  YVHPEQYQTFLTQLETDSKVQ----DFEYQAYCRDRRIVWVKETVRAVRDNNGQISYYEG 77

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR--------- 565
           +  DIT++K + E +  +A  D LTG+ NR +F D LT  L     +             
Sbjct: 78  MLEDITQRKLTEEKLRYDATHDQLTGLFNRTAFTDELTKTLIRLKAEWKTENGYQDSESD 137

Query: 566 ----------------------------PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
                                          + ID+D++K +ND +G  VGD++L  +  
Sbjct: 138 VERENEKEVETDNETASFPLSPFSFPRYFAALFIDLDRFKIVNDSMGHLVGDELLTEIAS 197

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+ + +   DI+ARL G+ F +I     +   +      +++ ++ P  L +     TAS
Sbjct: 198 RLDKEMTENDIVARLGGDEFALIFKHIPDLAGLEQRTHQIQQQLSQPYFLKDETFKTTAS 257

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAV 715
           IG A       T+ E+L++A+ AMY AK +GG     F+  + +   + + ++ DL  A+
Sbjct: 258 IGIALSKPEYETADEVLRDADTAMYEAKRQGGGKFVIFQPGMHTRVVNLLRMERDLRQAI 317

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  +  L Y PII     + +GLEAL++W HP+ G I    F+ +AEE  +IK + L++ 
Sbjct: 318 EQQQFCLYYQPIIESATGKTIGLEALVRWIHPEQGLIPPDLFIPLAEETGLIKELGLWVF 377

Query: 776 ERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           E     +  W+ Q  +   + + IN++   L        +  ++ KT       ++  +E
Sbjct: 378 ETACFQLRQWQTQFIHHADLGMNINVSPIQLKQPNFVHLVSDILEKTGIKSDTCRVEITE 437

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893
           + ++ NPE +  +L  L+K+G+ L +DDFGT  S LSYL   P D +K + S +      
Sbjct: 438 NAMIQNPEGAMAILHDLKKLGVLLYIDDFGTGYSSLSYLQQFPIDALKIDKSFIQKIDAS 497

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            K   I  +II + +     ++A+ +     I  L    C ++Q  + + P    SI + 
Sbjct: 498 VKSAQIAHAIIALGEAFGLKVVAEGVENNFHIAMLKATHCHHLQGYYFSRPKDAQSIEEF 557

Query: 953 LK 954
           L 
Sbjct: 558 LS 559


>gi|71278443|ref|YP_267424.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144183|gb|AAZ24656.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 788

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 155/716 (21%), Positives = 292/716 (40%), Gaps = 37/716 (5%)

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT---ASIARITLASIVLYYTYFIIY 328
           +         +  + F  +  +     M      +      +  + +         F I 
Sbjct: 68  FFDTRWVLISLCGLFFGLVPTLIAGAMMVSLRLHIGGAGILVGSLCVIIPGSIGCLFAII 127

Query: 329 HGMK-----GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
              K      ++     +   I +    + +   +  ++   +IQP +V   V  +++  
Sbjct: 128 LKRKNLKLDWFKLYSFGMLIQITVLGCMLLMPEHLRYKVIGAVIQPVIVVFPVCTMLVGL 187

Query: 384 FTVIQHVLATGYF----SQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATIL 438
               Q       +    SQ + +  +     ++GS  D++   D+    +         +
Sbjct: 188 ILRRQRDRRKSEYDLTESQKLLNREQSLMRGLIGSLPDLISFKDVQGRYLGCNHAFEQFV 247

Query: 439 GLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           GL    + G +   L      +D        +  +         +  V   D        
Sbjct: 248 GLTEQELKGKMDQELKGNFKPSDIAGLD---EQEIIASGKVYSQDEWVVYPDGSKVLHET 304

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +     +G     + ++ DITE+K   + I   AF D+LT +PNR+   DRL  ++  
Sbjct: 305 IKKTFDGFDGTRYGLMSVSRDITERKNHEDQIQRLAFYDSLTQLPNRRMLQDRLQLLVTT 364

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           SA D+     +  ID+D +K +ND  G  +GD +L+++  RI + ++  DI+ARL G+ F
Sbjct: 365 SARDERFN-ALFFIDLDHFKTLNDTQGHNMGDQLLIAVAARIQDSVRDEDIVARLGGDEF 423

Query: 618 GIILISENNSLK-----IADFAIAMRKSIAMPINLLERE---------ITVTASIGFASW 663
             ++ +               A  +R SI  P  L  +E            T SIG + +
Sbjct: 424 VALISNLGEDEATAGHVAEKVAEKIRLSICQPYKLSIKENVDANNEMIFHCTPSIGISLF 483

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELY 721
            S+  +  E+LK A++AMY AK  G N +  F  +      +   +  +L  A++N EL 
Sbjct: 484 KSNLTSPDEILKQADVAMYQAKAAGRNAIRFFDPAMQIALEENAAMLAELHQAIDNGELE 543

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y   I    + I G E L++W HP  G +S  +F+ +AEE  +I  I  ++LE     
Sbjct: 544 LFYQIQID-ETKGIQGAEVLLRWFHPIRGMVSPLDFIPMAEESGLIIPIGRWVLESACHQ 602

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W +  N     I +N+++         E +Q +I     +P  +KL  +ES+V+ N 
Sbjct: 603 LKVWENIPNRENWQISVNVSALQFQQENFVEIVQEIILSNNINPHGLKLELTESMVLDNV 662

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
           +     + +L ++GI  ++DDFGT  S LS L  +P   +K + S +          AI+
Sbjct: 663 DIIIEKMHQLNQLGIDFSMDDFGTGYSSLSCLKRLPLKQLKIDQSFVRDITTDPDDAAIV 722

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++II ++ +++  +IA+ +  +   + L   GC   Q    + P+      +L+  
Sbjct: 723 QTIINLSNSLKYDVIAEGVETQEQRQFLFNNGCSQYQGYLFSRPVPIAEFEELVSS 778


>gi|260599078|ref|YP_003211649.1| signaling protein [Cronobacter turicensis z3032]
 gi|260218255|emb|CBA33187.1| Uncharacterized signaling protein PA1727 [Cronobacter turicensis
           z3032]
          Length = 827

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 144/634 (22%), Positives = 279/634 (44%), Gaps = 28/634 (4%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +    +  +    LI   + + I+ +     +      + +  A +              
Sbjct: 211 VTMVWRSEDPGHDLIVVILPLLIFLMCFTGLVAGIAMRNALTKARLND------------ 258

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            ++          + +   R       + D +W+ D        +     I G       
Sbjct: 259 -ENAFLLEQNRLALAASERRFRDVAEATTDWIWETDDDLRFTWLSERFPVITGYRIADWL 317

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G            D            G+   R     R  +A     +  +  +P++ + 
Sbjct: 318 GRRVTEFIQ---EDSATLEAWFHQP-GHGGHRAMTHCRYLSAQGHQRYCNLVAKPIATAE 373

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +  + G A D+T + ++   +   +  D LTG+PNR    + L   L    T ++   
Sbjct: 374 GGLS-FRGTATDVTLEVEAQARVQYLSLHDELTGLPNRVRMKEFLEGKLQSRPTREHP-L 431

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+DK+K +ND+ G  VGD++L  ++ R+   L+  D++AR  G+ F +I+     
Sbjct: 432 AMISLDLDKFKPVNDLFGHGVGDELLHQVSARLRACLRDFDLVARQGGDEFILIIPDIER 491

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +      +   I  P ++ + EI + AS+G A      + ++++L+ +++A+Y AK 
Sbjct: 492 KEALEQLCERILAEINRPFSVQDHEILIGASMGIALAPQDAVNATDLLRFSDIALYKAKS 551

Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    +   ++     R  ++  L  A+ + +  LVY P   +  E+IV +EAL++W
Sbjct: 552 SGRNGWVFYDAHMAEQIVQRREMENSLREAIRDRQFQLVYQPRYDMNAEKIVAVEALLRW 611

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G +   +F+ +AEE  +I AI+ ++L    RD      Q +MP + I +NI++ +
Sbjct: 612 HHPTLGLLMPDQFIPLAEETGLIIAISDWVLNAACRD-----AQRDMPGLAISVNISAVE 666

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L E +Q  ++ T  +P R++L  +E+  + NPE+S  L+  L+ +G+ L +DDFG
Sbjct: 667 FRTPGLVERVQEALNATGLAPERLELEVTENATLSNPEQSLELMNGLKALGVRLLIDDFG 726

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   PFD +K + S + G   ++   +I+ +II + K    +I A+ +  + 
Sbjct: 727 TGYSSLSYLRTFPFDGIKLDKSFVAGMPHSDNANSIVENIIGLGKAFSLSITAEGVETQE 786

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + +L    CD  Q   +  PL    +   L+ +
Sbjct: 787 QLAQLKMYQCDETQGYLMCRPLPLERLKAQLRGQ 820


>gi|253997727|ref|YP_003049790.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253984406|gb|ACT49263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylovorus sp. SIP3-4]
          Length = 1237

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 129/573 (22%), Positives = 266/573 (46%), Gaps = 13/573 (2%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             +        +          +  S D +  +D    R+     +          +    
Sbjct: 663  AIERHRSDTQLQERERELRSLLDNSPDTITRYDANCRRLYVNQRMLEYFDTTPDVVLHTT 722

Query: 450  RNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                P   + +      R      +  +    + E  ++A++ +     IR+ P  N +G
Sbjct: 723  PRDFPGGSVTVEYEARIRQAF---LTGQPD--ELELPLKASNGKLLVRHIRMMPEFNPDG 777

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +   + +  DITE  +  + I   AF D LT +PNR   L+++ + +  +A    +  +
Sbjct: 778  TVASVLAVGRDITEIVEYRQRIHDMAFYDALTRLPNRAMLLEQMRSGILAAAGAQQV-FS 836

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +MV+D+D++K+IN+ LG + GD +L     R+ + L+  D+LAR+ G+ F ++L   +  
Sbjct: 837  LMVLDLDRFKQINETLGHSTGDLLLCEAAARLQDHLREGDMLARMGGDEFVLLLRPGDAE 896

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             ++   A  + ++   P  +  RE+ V+ S+G A + +    +  +LK A+ AMYHAK +
Sbjct: 897  PELIAMAQTLIQAFRQPFLVAGRELFVSTSVGIARYPTDSQDADTLLKFADTAMYHAKAQ 956

Query: 688  GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G N+ + +  +        I+ +  +  A++  EL L Y P   L++  IVG+EAL++W+
Sbjct: 957  GRNNFQFYVSALTEVSSARIELETMMRRAIQQQELELYYQPQWDLLENRIVGVEALLRWN 1016

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
              + G +  + F+ +AEE  +I  +  ++L    R  + W       P+ I +N++++  
Sbjct: 1017 QTEHGLMMPNVFIPVAEETGLIIELGEWVLTTACRQAVQWNKDK-DEPLKIAVNLSTRQF 1075

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + N L   +  ++ +T   P  IKL  +ES+++ +       L     +G+ +++DDFGT
Sbjct: 1076 IQNPLLASVTRILHETGCRPEWIKLEITESLLLESNLDILNTLNAFDAMGLVISIDDFGT 1135

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S LSYL   P   +K + S +        +  +++++I +A  +   ++A+ +  ++ 
Sbjct: 1136 GYSALSYLNRFPVKQIKIDRSFVKDVPHDTHKSELVKAMISIAHVLNLDVVAEGVETQVQ 1195

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               L   GC  +Q      P+   ++  +L+E+
Sbjct: 1196 SDYLKASGCRAVQGYFYGRPMPLAALEAMLREQ 1228



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 27/196 (13%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +    +  ++A   +   +   D     +         LG     +     ++
Sbjct: 6   LVDAQKALADSKQLLAMAGDLARISMAIVDTDGHWLAANTPCCQQLGYEEAELLNT--SY 63

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +H  DR   +      +     +   E R +    +  W+     P+ + +  +L Y
Sbjct: 64  CDLVHPEDRRAEKLTWREVLAACCAQ-PLEHRFKHRSGRHVWLSSSFSPIRSQDNTLLFY 122

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    +IT++K   +                R      L  + + +   D          
Sbjct: 123 LLRIENITDRKLGEQH---------------RVLMNFALNQVSEAAYLLDEN-------- 159

Query: 573 IDKYKKINDVLGIAVG 588
            D+   +ND    A+G
Sbjct: 160 -DRLTYVNDAACHALG 174



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 2/152 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +++ +       Q + S  +     V    D V  +D    RV   P    +L   +
Sbjct: 240 RLVMVRDIGDRKAAEQQLRSQEQLYHTLVDHLPDPVIRYDSEGKRVFLNPVAEALLQRPT 299

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--WMIIRIR 500
             + G     L       ++    +             +    + +D Q H   + +R+ 
Sbjct: 300 AELLGKTSLELNPASQALQEYVDRVKHVVATGEASDFDFFMDRQPSDLQVHNKVIAVRMV 359

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           P  +  G I   + +  D++  K++       
Sbjct: 360 PERDPEGRIAGVLAVGRDVSMLKEAQRKFSSL 391



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 18/219 (8%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R  +D+     V  + ++        I  VLA G     +     + S  +    D++  
Sbjct: 342 RQPSDLQVHNKVIAVRMVPERDPEGRIAGVLAVGRDVSMLKEAQRKFSSLLENIPDLIAR 401

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D+    +   P      G+ +  + G      P          ++I +         + 
Sbjct: 402 FDLQGRYLYVNPTFCETFGMKAADLIGQQDITWPGEAGQSAPILKSIQEVAQREEAITVT 461

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC-------NA 533
            +  +   + +  ++  R+ P S+  G ++  + +  D+T+ +                A
Sbjct: 462 LDVAL---NGKPSYLEWRLIPESDQQGRVISVLAVGRDMTQLRMHERLEQMRLLILESLA 518

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
             D  + +      LD +T  ++ +        ++M++D
Sbjct: 519 HGDAFSSV------LDLVTRYMEQAK--PGFLCSIMLLD 549



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 7/124 (5%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            A+    +  +  D               LG +   +          IH +         
Sbjct: 144 FALNQVSEAAYLLDENDRLTYVNDAACHALGYSREELLQMEMGD---IHRDGWPEITRT- 199

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            +        L  E      D     + I    +    G   R + +  DI ++K + + 
Sbjct: 200 -TLNNSAAPHLVAEAMHTRQDGSQFPVEIHAS-LFEYEGVPYRLV-MVRDIGDRKAAEQQ 256

Query: 529 ILCN 532
           +   
Sbjct: 257 LRSQ 260


>gi|220907740|ref|YP_002483051.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Cyanothece sp. PCC 7425]
 gi|219864351|gb|ACL44690.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Cyanothece sp. PCC 7425]
          Length = 884

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 232/438 (52%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++   + I   AF D LT +PNR  F+DRL   L  +      + +V+ +D+D++K IN
Sbjct: 436 QRQHKEQVIRYQAFHDLLTDLPNRALFIDRLNLALSNAHRSGE-KLSVLFLDLDRFKTIN 494

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +VGD +L ++  R+   L+  D +AR  G+ F I+L   +    +A  A  M  +
Sbjct: 495 DTLGHSVGDQLLKAVAHRLTHCLREGDTIARWGGDEFTILLPQIHQVNDVAKTAQRMLSA 554

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  P +L   E+ +T SIG A +         ++K+A++A+Y AK  G N  + F    S
Sbjct: 555 LEQPFHLENHELYITPSIGIAIYDLDGHDGETLIKHADMALYQAKQLGRNTYQFFCSGLS 614

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   +R+ +++ L  A+E  E  L Y P + +   +I G+EAL++W HP+ G +    FM
Sbjct: 615 NGAPERLNLEKSLRHALERQEFLLYYQPQVNIKTGKITGMEALLRWKHPEMGLVIPQLFM 674

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I AI  ++L        +W+DQ   PPI I +N++++     +L   +  ++
Sbjct: 675 SVAEESGLIVAIGEWVLRTACAQNKTWQDQGL-PPICIAVNLSARQFRQPDLTGMIARIL 733

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P  + L  +E+  + + E ++ +L  L+ +GI +++DDFGT  S L++L   P 
Sbjct: 734 DETGLPPQYLDLEITETTAIQDIEFTKRVLQELQDMGIQISMDDFGTGYSSLAHLQQFPL 793

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + S +    +  +   I+ ++I +A+ +   ++A+ +  +  +  L  + C+  Q
Sbjct: 794 NTLKIDRSFVRDVAANSRDAQIVTAVIGLARGLNLNVVAEGVENDEQLNCLESLHCEEAQ 853

Query: 937 DSHVASPLGFNSILKLLK 954
                 PL  ++  ++L+
Sbjct: 854 GYIFNRPLEADAATEILQ 871


>gi|307610059|emb|CBW99594.1| hypothetical protein LPW_13641 [Legionella pneumophila 130b]
          Length = 792

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 169/789 (21%), Positives = 324/789 (41%), Gaps = 46/789 (5%)

Query: 182 KDTVNSFTLYR---GIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDF 236
            +      L+      I G A  + I     + V    +LI    F   +  L    + F
Sbjct: 23  IEKEQVKLLFDQVGMAISGEALAVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLF 82

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL 296
            +  +           W     + + SS + + F         + +  I    +      
Sbjct: 83  YYNKQ---PTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTA 139

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
              S Y P+  +         +V  +  F I+   KG    V L+  +  I        M
Sbjct: 140 AANSLYSPVRLSY-----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIY---MGIM 188

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                  N I+   L     +  +     +++  +     ++ +          +  + D
Sbjct: 189 LFISYYSNKILINTLKMRFKISNLNSTKDILEKKVVDR--TKELEKILALTKSTLESTAD 246

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDS 470
            +   D+  +          + G++ G +                 +  +   F   +  
Sbjct: 247 GILVVDLKGNIEFCNQQFLKMWGISPGFIESHNDTETIQYVLNQLKNPEE---FLKQIKE 303

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                +     E      D +      R       +  I+  +    D+T        + 
Sbjct: 304 LYNNPKQESFDELHF--KDGKIF---ERYSQPHWLDNKIIGRVWSFRDVT----LRTRLA 354

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+PNR +  DRL   ++      N   +V+ +DID +K IND LG   GD 
Sbjct: 355 YQANHDSLTGLPNRTALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDI 413

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L   +RR+   ++  D +AR  G+ F ++L+       +   A  + K++A PI L  +
Sbjct: 414 LLYEFSRRLKGCIRHSDTVARFGGDEFVLLLM-TTEPKDVILVAQNILKAVAQPIKLPTQ 472

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-- 708
           E+ VT SIG + +    I +S +LKN++ AMY AK  G N+ + +  S  +     ++  
Sbjct: 473 EVIVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQ 532

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A++N+E +++Y PI  L + E+VG EALI+W HP  G +S  EF+ IAEE  +I 
Sbjct: 533 TQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLIN 592

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++L        +W+    +P I I +N++ + L ++   E  ++++ ++   P  +
Sbjct: 593 QVGEWVLRNACIQNKTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYL 651

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++ F+ES ++         L ++ ++GI + +DDFGT  S LSYL   PF+ +K + S +
Sbjct: 652 EIEFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFI 711

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +     +I+ +II MA ++E  ++A+ +        + + GCD +Q      P+  
Sbjct: 712 QNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKA 771

Query: 947 NSILKLLKE 955
           +  +KL+++
Sbjct: 772 DKFVKLMQK 780


>gi|255524895|ref|ZP_05391843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
 gi|255511373|gb|EET87665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
          Length = 916

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 153/584 (26%), Positives = 264/584 (45%), Gaps = 16/584 (2%)

Query: 378 IVILIGFTVIQ-HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           + +    T IQ +       ++ +       S A+      +   D   + +        
Sbjct: 339 LFMFHDVTKIQEYTNNLKQLNEELSISDRIISTAME----GILITDSSGNIIKVNNSFER 394

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G     + G     L   H N +  +  + +  + Y  G  + E   R  + + +   
Sbjct: 395 ISGYKGEELIGKNPRVLKSGHHN-KSFYLNMWNDLLTY--GYWEGEIWNRKKNGELYPKW 451

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + I  +    G I  YI I+ DIT+ KK+ + +   A+ D LTGIPNR  F +RL   L 
Sbjct: 452 MSITCLKKQGGIIENYIAISTDITKIKKTEDKLQSLAYYDLLTGIPNRTLFYERLENALI 511

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +  +      ++ +D+D +K IND LG A GD +L  +  RI   +   D ++RL G+ 
Sbjct: 512 RANNNKG-SVALLFMDLDGFKVINDSLGHAAGDLLLKEVAARIESSISRSDTVSRLGGDE 570

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +IL + NN       A ++   I +P ++L REIT+  SIG A     + T   +++ 
Sbjct: 571 FTVILENVNNHEDAKAAAESIIGKILLPYSILGREITLGVSIGIALSPYDESTVEGLVRK 630

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE- 733
           A+ AMY AK  G            R +  +++    L  A++N+E  L   P I   +  
Sbjct: 631 ADAAMYDAKESGKGKYSFSSDEIERRNHEILEMQIKLNKALDNNEFNLYLQPQIIFAENE 690

Query: 734 -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +I+G EALI+W        +  +F+ ++E   MI  I  ++LE I R     +D     
Sbjct: 691 FKIIGAEALIRWKTIDGKIFTPDKFIPVSETNRMIIPIGNWILEEIFRIDKVLKDNGIN- 749

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I + INI+SK   +  L   ++ L  +       + +  +ES ++ + E +   L  ++
Sbjct: 750 -IKLSINISSKQFENGNLVSKIKELFKENDSQNIDLVIEITESFLLQDTESAIQSLLEIK 808

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911
           K+GI +++DDFGT  S LSYL  +P D +K + S +    +     +  +II MAK +  
Sbjct: 809 KLGIEISIDDFGTGFSSLSYLARLPVDYLKIDKSFIDDILSTNHKNLTSNIISMAKTLNL 868

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +A+ +  E     L   GCD +Q  + + PL  +  +K +K+
Sbjct: 869 KTVAEGVETEEQANRLMDEGCDELQGYYFSKPLIIDDFIKYVKQ 912


>gi|229071016|ref|ZP_04204242.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228711956|gb|EEL63905.1| Sensory box/GGDEF [Bacillus cereus F65185]
          Length = 785

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 780


>gi|292491335|ref|YP_003526774.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579930|gb|ADE14387.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 694

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/586 (22%), Positives = 260/586 (44%), Gaps = 18/586 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++           +    Q   ++  R S  +  + D+V   D+              LG
Sbjct: 112 LIPAVERELREAESRRQRQAADNERIRLSSILEATPDLVAITDLKGRIHYINRAGRRWLG 171

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDS----FVGYRRGRLQYEFRVRAADNQFHWM 495
           L     +      L     + +  +   L            G  + E  +  ++     +
Sbjct: 172 L--DEKNRCPMTLLT----DYQPFWTAALMENNALPSALAEGVWEGEMVILDSNGSEIPV 225

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              I    N    +     IA DI E+K   + +      D LT +PNR    DRL+  L
Sbjct: 226 SQVILSHRNQQNQVEFLSTIARDIRERKHYEQALQHRVTHDALTHLPNRILLRDRLSRAL 285

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +  + +L   V+ +DID +K+IND LG   GD+ L  + +R+ + ++  D + R  G+
Sbjct: 286 INAERNQHL-IAVLFLDIDNFKQINDALGHLAGDNCLRMVGQRLAQCIRTNDTVGRYGGD 344

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F IIL + +    +      +R +++ P  +   ++ +T SIG + +         +LK
Sbjct: 345 EFLIILGNLHAPADVEIIIKKIRAALSQPFRINNHDVFITLSIGASLYPQDGGDEENLLK 404

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +++ AMY AKH G +    +        R  + ++ DL  A+E  E  L Y P + L   
Sbjct: 405 SSDTAMYTAKHTGRDQFRFYAPKMKDRGRELLALETDLRRALEREEFILHYQPQLDLSTN 464

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +I  +EAL++W H + G +S  +F+ + E+  +I  +  ++LE   +   +W       P
Sbjct: 465 QITAVEALVRWQHAQRGLVSPGDFIPLLEQTGLIVEVGNWILETACKQAQAWWAWGY--P 522

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + I +N +++    + L + ++ L+ K   +P+ ++L  +ESVVM + + +  +L  L+ 
Sbjct: 523 LRIAVNCSARQFQQH-LLDTVRQLLQKYSLNPACLELEVTESVVMQDVQYATHILQHLKV 581

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIET 911
           +G++L +DDFGT  S L+YL   P  ++K + S +   ++     AI  +I+ +  +++ 
Sbjct: 582 MGVTLAIDDFGTGYSSLAYLKRFPIHSLKIDHSFVHELSDDSEDAAIAEAIVLLGHSLDL 641

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +IA+ +  E   +      C  IQ   V  P+   ++  L++ R 
Sbjct: 642 EVIAEGVESEAQAQFFQNRQCHRIQGYWVGRPMPAENLFPLIEARN 687


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
          Length = 1499

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 224/433 (51%), Gaps = 5/433 (1%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            ++ + I   A+ D LT +PNR  F  +L  +++ S      +  V+ +D+D++K +ND L
Sbjct: 1045 RAEKDIHQLAYHDVLTSLPNRTLFHKQLGELMNRSHLRGE-QFAVLFLDLDRFKLVNDTL 1103

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G  VGD +L +   RI   L+  D++ARL G+ F +IL    +    A+ A  +   ++ 
Sbjct: 1104 GHEVGDLLLKAAADRIVGCLRSNDMVARLGGDEFTVILEKIESPRVAAEVAAKICSVLSK 1163

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
                  +E+ ++ SIG + +       S ++K+A+ AM+ AK +G ++    + + +   
Sbjct: 1164 VFAFSGQEMYISTSIGISLYPGDGEDVSTLVKHADTAMFRAKEQGNSYQFYEKGMETAAV 1223

Query: 703  DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             R+ ++ +L  A+E +EL L Y P I L   EI  LE LI+W HP+ G I  SEF+ +AE
Sbjct: 1224 KRLGLEAELRRALEQNELALYYQPQINLGTGEIATLETLIRWHHPEHGLIPPSEFIPLAE 1283

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            E  +I +I  ++L      + SW  Q    P  I +N++ ++L   +L + +  ++ +T 
Sbjct: 1284 ETGLIASIGAWILREACTQMQSWL-QRGFGPFHIAVNVSGRELEREDLVDKIVTILKETG 1342

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  ++L  +ESVVM     +     RLR++GI   +DDFGT  S L+YL   P D +K
Sbjct: 1343 LPPKWLELEITESVVMKGAGAAIPKFRRLREMGIKFAIDDFGTGYSSLNYLKSFPVDILK 1402

Query: 883  FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +   +    S     AI++ II +A ++   ++A+ +  +   + L    CD  Q  ++
Sbjct: 1403 IDRCFIHDVVSNPDDAAIIKGIIALAHSLRLKVVAEGVETQAQEEFLKAHQCDRFQGFYL 1462

Query: 941  ASPLGFNSILKLL 953
            + PL    I + +
Sbjct: 1463 SEPLSAAEIEQAI 1475


>gi|229166600|ref|ZP_04294352.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|228616854|gb|EEK73927.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 805

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 305/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + I   F   + N  S           +    ++  
Sbjct: 56  ILFLSIGDVFLSFIFPIIDLLLLLLGISLIFRPAIFNAKSK----LFIFILVLTGLAITD 111

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318
           +L+ YL  +     +  +       + ++   +             ++  +  +  L   
Sbjct: 112 YLYFYLQDDLSDRSLILLRCLYRVFLLLIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 171

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 172 PYLAVAVLIGFTLKEQTSSSTLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 225

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   +     +      + +L
Sbjct: 226 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            DR      L          LQ   +     +   W  + 
Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  KK  + I   AF D +T I NR  F   L   ++ +
Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIERA 401

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 402 RKTQG-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLLPAIPLARIGGDEFA 460

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ +     ++ D    + +       + +    ++ SIG A +    I ++ +L++A+
Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEAFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +      ++
Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 579

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + +
Sbjct: 580 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKM 638

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     S I L  +E + M + + +   L  L+  G+
Sbjct: 639 GINLSAIEFEQKDFVQTIISTIEEVGVPASSIDLELTERIAMVDEKETLAKLKALKSYGV 698

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+ +II +A  +   +I
Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 758

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +K L 
Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 798


>gi|90410462|ref|ZP_01218478.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK]
 gi|90328703|gb|EAS44987.1| hypothetical protein P3TCK_20925 [Photobacterium profundum 3TCK]
          Length = 1053

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/548 (25%), Positives = 250/548 (45%), Gaps = 9/548 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             S AV  S D V   D                G+ S    G     L           + 
Sbjct: 494  LSHAVEQSDDTVLITDKNGIIEYVNHSFEAFTGITSAEALGRDSRTLMKGANETTSEIKH 553

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            I       +   +      + +DN   +    I P+ N  G I  YI    DITE+    
Sbjct: 554  IHQQLKAGKT--IHRVITRKKSDNTVCYEDETISPIRNDTGKISHYISTGKDITERVLFE 611

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
              +   A  D LT +PNR   L  +   +  +         V  ID+D +KKIND LG  
Sbjct: 612  SKLHKLAHYDLLTELPNRLLLLQYIEQAITNAEEM-KTSVVVFNIDLDFFKKINDSLGHD 670

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            VGD VL+++ +RI   L+  D+LARL G+ F I++ S+ +S  IA  A  +  +I   ++
Sbjct: 671  VGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIATLAERIINNICASLS 730

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
            + E+ +++TAS+G A +  + + S  +LKN+++A+YHAK +G N    F          R
Sbjct: 731  IEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGRNRYCFFTPKMGIESVQR 790

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            + ++ DL  ++   +    Y P +     ++ G+EAL++W + +    S    + I E  
Sbjct: 791  LQLESDLRKSLGTDQYTFFYQPKVNAKTHKVCGIEALLRWKNEEGQIQSPLGIIPILENS 850

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  +   ++ +    +  W+       +   +NI+++ LL +++ + +   ++ +  +
Sbjct: 851  GLIVNVGETLINQACEQLAIWQSNGLD--LHFALNISARQLLHSDIVDTVYKAVTMSGCN 908

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            P  ++L  +ESVVM + + +   L +L  +G+ + +DDFGT  S L+YL   P   +K +
Sbjct: 909  PHYLELEITESVVMADVKLAFDKLIKLEALGVKIAIDDFGTGYSSLAYLSRFPIHILKVD 968

Query: 885  GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
               +      +  + I RSII +A N+   ++A+ +  E  IK LT +G +  Q  +   
Sbjct: 969  REFVQDLPMNKDSVTITRSIIELAHNLSMLVVAEGVENEDQIKFLTNIGVEEFQGYYFGK 1028

Query: 943  PLGFNSIL 950
            P+  +   
Sbjct: 1029 PMPIDEFE 1036


>gi|206969232|ref|ZP_03230187.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
 gi|206736273|gb|EDZ53431.1| sensory box/GGDEF family protein [Bacillus cereus AH1134]
          Length = 828

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 823


>gi|52141742|ref|YP_085088.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51975211|gb|AAU16761.1| sensory box/GGDEF family [Bacillus cereus E33L]
          Length = 911

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 314/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C++IQ  + + P+  +S  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCEFIQGYYYSKPIHADSFS 900

Query: 951 KLLKE 955
            LLK+
Sbjct: 901 TLLKK 905


>gi|304406750|ref|ZP_07388405.1| diguanylate cyclase/phosphodiesterase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344283|gb|EFM10122.1| diguanylate cyclase/phosphodiesterase [Paenibacillus
           curdlanolyticus YK9]
          Length = 630

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 153/623 (24%), Positives = 280/623 (44%), Gaps = 26/623 (4%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
            L   AW++  +  +G  +++    +  +       G+ + ++                 
Sbjct: 25  KLYKTAWLMSALLLVGSALSVFWLANMPLALGLAGSGICMSIV-------------AATQ 71

Query: 398 QGIFSDGERQSLAVLGS---GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           Q + +   R S+A+ G           D     +      A  LG    S          
Sbjct: 72  QAMAAVRTRSSIALTGMQHNPLPFLALDRTGAIIQLNEAAAEALGYERHSHALVGELLER 131

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           Y+   D         +    +  +     R            +   P+   +G     + 
Sbjct: 132 YVDSGDLALLEANRRNAYEGKIEQATIGVRSLT--GMSMSWDVLFAPVGIQSG-TSGCVL 188

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA D++E+K+  E +   AF D++TG+PNR+ F++RL  +L     + +    V  +DID
Sbjct: 189 IAQDMSERKRHDERVKHMAFYDDMTGLPNRRLFVERLGEMLAEV-REPDSMLAVCCLDID 247

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IN   G   GD +L+ +  R+       D + R+ G++FG+IL ++N+  +I    
Sbjct: 248 HFKLINASYGHDYGDMLLLQMADRLLRGCTDVDFVCRMDGDKFGVILAAKNSEGQIEAAV 307

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++  ++  P  L    I +TAS G++S     +   ++L+NA LA+  AK  G N    
Sbjct: 308 QSLLSALEEPFELQGIPIQLTASAGWSSSAQEPLYPDKLLRNANLALIKAKENGRNECLI 367

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +R     +  +R+ ++ DL  AV N E  L+Y P   +   +IVG+EAL++W HP  G +
Sbjct: 368 YREEWDEASLERLRLQHDLRRAVANREFVLLYQPQYDMNTGDIVGVEALLRWHHPLRGLV 427

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             S+F+ +AEE  +I  I  ++LE   R   SW+D     PI + +N++ +         
Sbjct: 428 QPSKFIPLAEESGVIVQIGQWVLEEACRQNKSWQDAGLA-PIPVSVNLSMRQFWQPNFTA 486

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++A+++K    P  ++L  +ES+ M +P++    L  L  +GIS+++DDFGT  S   Y
Sbjct: 487 SVEAVLTKVGLEPRYLELEITESMTM-DPDKLTQSLNELTALGISISIDDFGTGYSSFHY 545

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L + P D +K + S ++          I+ +II MA N+   +IA+ +     ++ L   
Sbjct: 546 LKHFPVDRLKIDRSFVSDIEQDPGDAEIVAAIIAMAHNLNMQVIAEGVETAQQVQFLKMH 605

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
            CD +Q  + + P+    I ++L
Sbjct: 606 LCDEMQGYYGSPPVTSERIAEML 628


>gi|228985623|ref|ZP_04145776.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774018|gb|EEM22431.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 785

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/754 (21%), Positives = 306/754 (40%), Gaps = 20/754 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    S+  
Sbjct: 38  ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +  H  +  +       +  +  ++   P   +SI    + +        +I
Sbjct: 94  YLYFYLQDDLSHRSLILLRCLYRVFLLFI-AIAATIPRSASSIRNYFIINPTFGKKLLVI 152

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + +     +    L   L +    + 
Sbjct: 153 FPYLAVAILIGFTLKEQTASSTLITGNCIAFVFVLIRHTIVRMQNKDLTETLKVFNNQLE 212

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            TV Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 213 QTVSQRTRDLINKSNDLIKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 272

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+    + +          LQ   +     +   W  + I P+ 
Sbjct: 273 ALIG--EECFSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 329

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT+ K+  E I   AF D +T I NR  F   L   +  +    +
Sbjct: 330 -IEGQAFGSYVMVKDITKMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTKD 388

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID++++K IND LG ++GD VL  +T+R    L     LAR+ G+ F II+ +
Sbjct: 389 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVTKRFRTCLSPSLPLARIGGDEFAIIVHN 447

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 + D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 448 RTEKQ-LLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 506

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++G EAL
Sbjct: 507 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 566

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + + IN++
Sbjct: 567 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GFSNLKMGINLS 625

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    +  + + + I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 626 AIEFEQKDFVQIIISTIGEIGVPANSIDLELTERIAMVDEKETLAKLKALKSYGVHLSID 685

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +   G +     I+++II +A  +   +IA+ + 
Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGISTDGDEIIQTIISLAHTLNMKVIAEGVE 745

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +  L R  C  IQ  + + P+  +  +  L
Sbjct: 746 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFINFL 779


>gi|296329665|ref|ZP_06872150.1| putative sensor protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674062|ref|YP_003865734.1| putative sensor protein [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296153163|gb|EFG94027.1| putative sensor protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412306|gb|ADM37425.1| putative sensor protein [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 800

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/805 (19%), Positives = 314/805 (39%), Gaps = 61/805 (7%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV------NLPS 247
           I + +    A       +  + ++     ++ W++ G + + FG  S         ++  
Sbjct: 12  ICLSILIACAASYISLELSRKVTINTGLKSIVWLIGGSLIMGFGIWSMHFVGMMAVHMEM 71

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
                +        ++    F+ +Y   +R       +    +   A +  M +      
Sbjct: 72  PMQYEFMPLIASIGAAVSGSFVSLYF-VSRNILTYYRLLTGSVVLGASIASMHYIGMSSI 130

Query: 308 ASIARITLASIVLYYTYFIIY-----------HGMKGYERAVLLIPAWILIFIWFIGLWM 356
           + +  +    +  +     I              +K +   ++       I +      M
Sbjct: 131 SRVMIMYEPILFTFSIIIAIAASFVSLKIFFDLALKKHSDHLMFYKVISSIVMGIGISGM 190

Query: 357 AITKRLDNDII---------QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER- 406
             T  L                       + V LI F +   +L + +  +      ER 
Sbjct: 191 HYTGMLAASFHEDMGPPGSHMEVQTFHWSIFVTLIVFCIQTLLLFSSHADRKFIKQSERI 250

Query: 407 -------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI---LGLASGSMHGPIRNWLPYI 456
                  QSL V    D ++   +  D +++      +    G +               
Sbjct: 251 KDNEQRFQSLIVHNI-DAIFILSLDGDIISSNHAGEDMIRKFGFSMHDWRHYTS------ 303

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                     + D     ++  +  +  +     Q   + I + P+   N ++     I 
Sbjct: 304 -----KKINRLFDQVKKEKQA-INSDSDLITEKGQ-FHLNITLIPV-EVNQELDSIYVIC 355

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+T+Q ++ + I   A  D+LT +PNR+  +  LT +++   T +N    V  +D++++
Sbjct: 356 KDMTKQYRAEKEIHRMAHYDSLTDLPNRRHAISHLTAVMNREHTLNNSTV-VFFLDLNRF 414

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAI 635
           K IND LG  VGD +L    RR+  ++     +ARL G+ F IIL     ++ +    A 
Sbjct: 415 KVINDALGHNVGDQLLQLAGRRLSSVVPDNGFIARLGGDEFIIILTDANTSTGEADVLAR 474

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + +    P  + +  +  + SIG A          E++K A++AMY AK R  +    +
Sbjct: 475 KIIQKFKKPFKIQDHTLITSVSIGIAISPKDGTDGLELMKKADMAMYAAKERNKSKYRYY 534

Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S    + V + ++  L  A+EN+   L Y P     ++++ G EALI+   P      
Sbjct: 535 SFSIGNKETVKLNQEMVLREAIENNRFVLHYQPQFSAKNQKMTGAEALIRLVTPDGQLCP 594

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AEE  +I  I  ++++   +    W D+     + + INI+++     +L   
Sbjct: 595 PGEFIGVAEETGLIIDIGKWIVDEACKQARVWYDKGYD--LSVAINISARQFQSEDLIPL 652

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + K    P  +++  +ES+ M N + S+ +L  L ++GI +++DDFGT  S LSYL
Sbjct: 653 IKNALDKYQLPPQLLEVEVTESMTMDNLDHSKKVLSSLTELGIRISIDDFGTGHSSLSYL 712

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P   +K + S +       K   I  +II M   +   +IA+ +      + L   G
Sbjct: 713 KDFPIHRLKIDKSFIDDIQTHPKSEQITGAIIAMGHQLSLQVIAEGVENSAQKQLLYEKG 772

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD++Q    + P+    + +L+ E+
Sbjct: 773 CDHLQGFFFSRPIPPEQLEQLIIEQ 797


>gi|120611510|ref|YP_971188.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120589974|gb|ABM33414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax citrulli AAC00-1]
          Length = 1043

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/586 (21%), Positives = 237/586 (40%), Gaps = 25/586 (4%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               V+Q +               R    +      V                  I    +
Sbjct: 449  HIAVVQDISDRKRMEAAQHDSEARLRQILYRLPVGVCLVARDGTLSFRNERFEQI-CRHA 507

Query: 443  GSMHGPIRNWLPYIHIN--DRDNFRTILDSFVG----YRRGRLQYEFRVRAADNQFHWMI 496
             +    +R W   +  +   R+      ++               E+ +   D     + 
Sbjct: 508  DAAPATVREWWHRVIPDAPRREQAVADWEAACAAALAGDGTLASREYAITCGDGSVRTVD 567

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            +    +  +       +    D+++ K + E I   A+ D LT +PNR+  +DRL   L 
Sbjct: 568  MAGVLLDGA------CLITMVDLSQHKAAEEEIHYLAYYDPLTQLPNRRLLVDRLQQALA 621

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             S         V+++D+D +K +N+  G   GD +L  + +R+   ++  D +AR  G+ 
Sbjct: 622  ASVRRGRC-GAVLMLDLDNFKTLNETQGHERGDMLLRQVAQRLRGCVQNEDTVARHGGDE 680

Query: 617  FGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            F ++L          + +  D    +  ++  P  L       T S+G   +  ++ T  
Sbjct: 681  FVVVLEDLGQSPQGAAARAEDMGQKILAAMRHPFTLEGEPHHTTLSMGVTVFQGARETVD 740

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            E+L+  +LAMY AK  G N +  +      S      ++ DL   +   +  L Y P + 
Sbjct: 741  ELLQRTDLAMYQAKASGRNALRFYDPQMQASVAARAALETDLREGLGRGDFELFYQPQVN 800

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                 IVG EAL++W HP  G +S  EF+ +AEE  +I  +  ++L      +  W    
Sbjct: 801  H--GRIVGAEALLRWRHPARGFVSPGEFIPLAEETGLILPLGEWVLRTACERLAQWSRHP 858

Query: 790  NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             +  I + +N++++          + A ++ T     R+KL  +ES++  + E +   + 
Sbjct: 859  VLSRISLSVNVSARQFHQGGFVGQVLAALAGTSAEGRRLKLEMTESLLQQDLEDTIQKMQ 918

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
            +LR  G+  +LDDFGT  S L+YL  +P D +K + S +    +     +I R+I+ +  
Sbjct: 919  QLRAYGVGFSLDDFGTGYSSLAYLKRLPLDELKIDQSFVRDVLTDPNDASIARTIVALGT 978

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++   +IA+ +  E     L R  C   Q   ++ P+G +   +L+
Sbjct: 979  SLGLRVIAEGVETEAQRAFLERNHCHAWQGYLLSRPVGADDFEQLV 1024



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 407 QSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                  +   V   D    R V        ILG A   +           H +D+    
Sbjct: 345 FQTLFDQAAVGVAQVDTATRRFVRANARFCEILGYAPQELL--ALTVREVTHQDDQAESE 402

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D      +   +YE R    D +  W  +RI  M +  G   ++I +  DI+++K+ 
Sbjct: 403 AAIDRIATGVQQEYRYEKRYLRKDGEMVWAELRIATMRHGRGQPAQHIAVVQDISDRKRM 462

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                  A  D+            RL  IL  
Sbjct: 463 EA-----AQHDS----------EARLRQILYR 479


>gi|327438382|dbj|BAK14747.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 567

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 249/564 (44%), Gaps = 19/564 (3%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456
           Q    + +   +A+  S  I+   D              I       + G     L    
Sbjct: 14  QLTVEELQNIKVALDESS-ILAVTDQRGIITIVNDRFCKISKYERCELIGKDHRLLNSGY 72

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H   +  F+ +  +    +      E   RA D   +W+   I P  N+ G   +YI I 
Sbjct: 73  HP--KTFFKEMWRTIGSGKT--WNGEVCNRAKDGSIYWVQTTIVPFLNAKGKPYQYISIR 128

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT QKK  E I   A  D+LTG+PNR+  L+ L T++++    + L  ++M+ D++++
Sbjct: 129 TDITAQKKIGEMIHI-AHHDDLTGLPNRRMLLNDLKTLIEV----EQLPFSLMLFDVNRF 183

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD  L  +  R   L        RLSG+ F  IL +   S  +   A  
Sbjct: 184 KNINDGLGHHVGDMFLAEIAERTKTLTSPFITFYRLSGDEFICILRN---SDLLESAAED 240

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++       NL       + SIG  ++     ++ ++LK A+ AMY AK         ++
Sbjct: 241 IQALFKSQFNLNNHTFYASISIGAVNYPEHGYSAQDILKYADTAMYEAKKSNNRGFVIYK 300

Query: 697 VSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                S    + ++  L  A++     L Y P + L   +I G+EALI+W   + G +  
Sbjct: 301 KQQRFSYNQLLTLETKLHDAIKKEAFELYYQPKVNLQTNKIEGMEALIRWFDDELGFVPP 360

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+  AEE  +I  I+ +++ +  R +  W ++     + + +NI+   L        +
Sbjct: 361 DQFIPFAEEFGLISDISEWVIAKAGRQVTEWNERY-NLNLRVAVNISPNHLKAENFIVRL 419

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +   SPS +++  +E   +         + +L ++ I+L +DDFGT  S LSYL 
Sbjct: 420 NRILKQHGISPSALEIEITEMSFLDQNSDLLHTIKQLSEMDITLAIDDFGTGYSSLSYLK 479

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +         IA++ ++I +A+ +   ++A+ +    D+  L    C
Sbjct: 480 KFPVDLLKIDRTFIHEMYKNNADIAMVSAMISLARALNLKVVAEGVEEHADLHLLREFDC 539

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           +++Q  + + PL  +   K L E+
Sbjct: 540 EFVQGYYYSRPLTIDDFSKRLSEK 563


>gi|229179805|ref|ZP_04307152.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228603634|gb|EEK61108.1| Sensory box/GGDEF [Bacillus cereus 172560W]
          Length = 828

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 164/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  GI
Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGI 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 823


>gi|52841587|ref|YP_095386.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628698|gb|AAU27439.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 792

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 172/775 (22%), Positives = 324/775 (41%), Gaps = 43/775 (5%)

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250
             I G A  + I     + V    +LI    F   +  L    + F +  +         
Sbjct: 37  MAISGEALTVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLFYYNKQ---PTLFST 93

Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
             W     + + SS + + F         + +  I    +         S Y P+  +  
Sbjct: 94  EKWLFLFNLGVVSSGLAWGFASSIMIPASSTLHQIFVVFLITGVTAAANSLYSPVRLSY- 152

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
                  +V  +  F I+   KG    V L+  +  I    I L+++      N I+   
Sbjct: 153 ----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIYLGIMLFISYY---SNRILINT 202

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L     +  +     +++  +A    ++ +          +  + D +   D+  +    
Sbjct: 203 LKMRFKISNLNSTKDILEKKVADR--TKELEKILALTKSTLESTADGILVVDLKGNIEFC 260

Query: 431 TPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                 + G+A G +                 +  +   F   +       +     E  
Sbjct: 261 NQQFLKMWGIAPGFIDSHNDTETIQYVLNQLKNPEE---FLKQIKELYNNPKQESFDELH 317

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
               D +      R       +  I+  +    D T        +   A  D+LTG+PNR
Sbjct: 318 F--KDGKIF---ERYSQPHWLDNKIIGRVWSFRDET----LRTRLAYQANHDSLTGLPNR 368

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            +  DRL   ++      N   +V+ +DID +K IND LG   GD +L   +RR+   ++
Sbjct: 369 TALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDILLYEFSRRLKGCIR 427

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +AR  G+ F ++L+       +   A  + K++A PI L  +E+ VT SIG + + 
Sbjct: 428 HSDTVARFGGDEFVLLLM-TTEPKDVILIAQNILKAVAQPIKLPTQEVIVTTSIGISLFP 486

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYL 722
              I +S +LKN++ AMY AK  G N+ + +  S  +     ++    +  A++N+E ++
Sbjct: 487 KDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQIHNAIKNNEFFI 546

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           +Y PI  L   E+VG EALI+W HP  G +S  EF+ IAEE  +I  +  ++L       
Sbjct: 547 LYQPIYNLRSGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLINQVGEWVLRNACVQN 606

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W+    +P I I +N++ + L ++   E  ++++ ++   P  +++ F+ES ++    
Sbjct: 607 KTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLKESRLDPQYLEIEFTESTMIQKST 665

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900
                L ++ ++GI + +DDFGT  S LSYL   PFD +K + S +    +     +I+ 
Sbjct: 666 PIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFDKLKIDRSFIQNCTTNPNDASIVE 725

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +II MA ++E  ++A+ +        + + GCD +Q      P+  +  +KL+++
Sbjct: 726 AIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADKFVKLMQK 780


>gi|291566948|dbj|BAI89220.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1276

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 156/639 (24%), Positives = 273/639 (42%), Gaps = 85/639 (13%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIR 450
                  Q +    ER  + V  S D +  +      V        + G      + G   
Sbjct: 629  RQREAEQALRESEERYRMLVELSPDTIAIY-CDEQIVYINRAGWQLFGAEKPEDIIGRSI 687

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIRPMSNSNG 507
                     D D    IL+  +     R     +E ++   D +   + I   P +N +G
Sbjct: 688  YDFL-----DYDQTAVILNQKLPGESHRQSVGLFEQQLIRLDAKMIDVEIAGIP-TNYHG 741

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                   I  DI+++K++   +L  AF D LT +PNR  F  +L+  L  S  D N +  
Sbjct: 742  R-DAIQIIIRDISDRKQAQAQLLQAAFYDPLTELPNRSLFNQKLSEALRRSKEDSNYQFA 800

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K +ND LG  +GD +L+ +  R+   +    D +ARL G+ F I++   ++
Sbjct: 801  VLFLDLDRFKVVNDSLGHVIGDFLLIEIAHRLEVCVTNPGDTIARLGGDEFTILVDHISD 860

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK---------------ITSS 671
              +  + A  + + ++ P  +   EI  TASIG                           
Sbjct: 861  PQQALELAGKIHQELSQPFYIQGHEIFTTASIGIVPSRGYALKKSANTDNYHCLLYNNPE 920

Query: 672  EMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA--------------- 714
            + L++A++AMYHAK +G    E F   + +     + ++ DL  A               
Sbjct: 921  DFLRDADIAMYHAKEQGKARSEVFDLSMHTQTLALLQLETDLRKAIFGYQQLNLTPHHIS 980

Query: 715  ---------------------VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                                    ++  + Y PI+ L+   IVG EAL++W HP+ G +S
Sbjct: 981  SSESNPLASAISDVSVMPNQLPSLNDFIIHYQPIVCLITGRIVGFEALVRWIHPRRGLVS 1040

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP---------IFILINIASKD 804
             +EF+ +AEE  +I  +  ++LE   R + SW+ Q              + I +N++ K 
Sbjct: 1041 PAEFIPVAEETGLIVPLGAWVLEESCRQLSSWKQQLQSWDRSPQSVYSTLTISVNLSGKQ 1100

Query: 805  LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            L      E + A++++T   P  IKL  +ES+++ N + + + L +L+   I L +DDFG
Sbjct: 1101 LNQLNFIEQIDAILARTNCDPKSIKLEITESMLVENFQTALIALAQLKARKIHLAIDDFG 1160

Query: 865  TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----------RIAILRSIIPMAKNIETTII 914
            T  S LSYL  +P  ++K + S +    E+             I+++II +A N+   + 
Sbjct: 1161 TGYSSLSYLHQLPLKSLKIDQSFVQRLQEEPSHYIDKYNQPQQIIKAIISLAHNLGLEVT 1220

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            A+ I     ++ L  +GCDY Q    + PL      +L+
Sbjct: 1221 AEGIETRQQMQFLHHLGCDYGQGYLFSKPLPAEEATQLM 1259



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGL 440
              I H+LAT    Q      +    A+  S + +   D        +        I G 
Sbjct: 312 LEAIAHILATAIERQRADERLQLMERAINSSRNGIIITDATDSDNRVIFANSGFEKITGY 371

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G    +L     +        L + +   R     E +    D    W  + I 
Sbjct: 372 SRHQVIGRNCRFLQGKDSD--PKALAELRNAIEQGREC-NIELQNYRPDGSSFWNELSIS 428

Query: 501 PMSNSNGDILRYIGIANDITEQKKSL 526
           P+ NS G +  +IGI  DI++ K++ 
Sbjct: 429 PVYNSQGFLTHFIGIQTDISDHKQAE 454


>gi|94500398|ref|ZP_01306930.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65]
 gi|94427433|gb|EAT12411.1| hypothetical protein RED65_16276 [Oceanobacter sp. RED65]
          Length = 1407

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 129/576 (22%), Positives = 265/576 (46%), Gaps = 20/576 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + V    +      +  E        S + +                  + G    
Sbjct: 831  LATCRDVTQRRFIEHEARTASE----VFENSSEAIMMTTSTGLISRVNRAFTHLTGFDGQ 886

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             + G       +I  +        +   +    G  Q E        + H     +  + 
Sbjct: 887  HVIGVNP--KQFIAKDVSHQTMQDIRDALLVD-GYWQGELDYINRKGEKHPSWTGVTALK 943

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +  G I  +I I++DIT +K++   I   A+ D LTG+PNR    + L  ++      + 
Sbjct: 944  DEMGQIQSHIIISSDITHRKQTEARIQHLAYFDPLTGLPNRAQMHEALDRLMAK----EE 999

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             +  ++ ID+D++K IND +G   GD VL  +  R+ E +   ++++R+ G+ F +I+ +
Sbjct: 1000 SQLALLFIDLDRFKPINDTMGHPAGDQVLKEVASRLKEAVGAKNLVSRIGGDEFTVIMAT 1059

Query: 624  ENNSLKIAD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
               + +        +  +   +  P  + +R++ ++AS+G A +  + ++ +++L+NA+ 
Sbjct: 1060 LPETEQAIQTIIDVSERILHQMMQPFFIEDRQLYLSASVGIALYPENALSGTDLLRNADT 1119

Query: 680  AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMYHAK  G N+ + +   ++    +R+ ++ +L LA++  E  L +     +    I G
Sbjct: 1120 AMYHAKAMGKNNFQFYAEEMNEKAMERLELENNLHLALQRDEFELTFQAQWDIKHNCICG 1179

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            +E L++W  P  G +   +F+ I EE  +I  I  ++L R    I+ W++   + P  + 
Sbjct: 1180 VETLLRWHRPDIGLVGPDKFIPIIEETGLIVPIGEWVLRRACEQIMDWQEAGYVIP-KLA 1238

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            +N++++   D ++ + +  ++ +T   P  I+L  +ES++M + +R+  +L   RK+G  
Sbjct: 1239 VNLSARQFKDAQMLDRICRIVDETGVDPELIELELTESILMDDIDRTLAVLNEARKMGFG 1298

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            L++DDFGT  S LSYL   P   +K + S +      ++   I R+I+ MA N+   +IA
Sbjct: 1299 LSIDDFGTGYSSLSYLKQFPVSQLKIDKSFIQNLPYNQEDGQITRTIVAMANNLGLGVIA 1358

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + +  E   + L  +GC  +Q    + P+  +   +
Sbjct: 1359 EGVENESQRQFLKTIGCYQVQGYMYSHPVPADLFAQ 1394



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
                 +         +    +  S  +    D V+  D+   +   +   I  +LG +S
Sbjct: 566 IVSFIDINDRIKAELALKDSEQFWSNVIQTLPDTVYVNDLFAKQTRFSSRHIGELLGYSS 625

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRP 501
             +   I +W   IH +D       +      R G + +   R++  +  +  +  R   
Sbjct: 626 EELE-EIEHWRQLIHPDDVSKSDAAISQLKTMRPGEVKETTARLKHKNGNWRVIRFRDCI 684

Query: 502 MSNSNGDIL-RYIGIANDITEQKKSL 526
            S+        Y+G+A DITE++ + 
Sbjct: 685 FSSETQVPAQYYVGMARDITEEEDAK 710



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 9/154 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +         +     R  L   G  DIV+  +   +    +  I  +LG  S 
Sbjct: 697 VGMARDITEEEDAKIQLSFSERRYRLLANGISDIVFTLNKKLELSYISASINKMLGYDSD 756

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-------NQFHWMI 496
            +     +          +     L+  +        ++ +VR  D            + 
Sbjct: 757 QVMREGLSLFLIT--ESVNKLIQALERDLQLALSISSFKDQVRTMDLDAQTFSGVPVILE 814

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           ++   + N +G I   +    D+T+++       
Sbjct: 815 MQSSILRNESGAIEGILATCRDVTQRRFIEHEAR 848


>gi|198283533|ref|YP_002219854.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248054|gb|ACH83647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 1045

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/628 (21%), Positives = 278/628 (44%), Gaps = 16/628 (2%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-----FSQG 399
             +          +     N +  PA     +L++ + G+  ++ V            Q 
Sbjct: 303 YPLVAGVGIPRSVLWADWWNSVEGPAAGAFGLLLLSIFGYGYLRRVGREREGERQSAEQT 362

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHI 458
           ++ + ER  + +   GD V   D     +        ++G A     G    +    +  
Sbjct: 363 LWEEKERAEVTLHSIGDAVITTDTEGRVMDMNVVAEALMGYARTEAVGRPLEDVFRIVQE 422

Query: 459 NDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               +    +   +   +  RL     +   D Q   +     P+ +  G +L  + + +
Sbjct: 423 GSHAHLDNPVRRVLEEGQVVRLANHTMLLTKDGQERAIEDSAAPIRDRQGVLLGVVLVFH 482

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE+++ +  +   A  D LTG+PNR  F+DRL      +   ++L   V ++D+D +K
Sbjct: 483 DVTEKRRLIAELAHQATHDALTGLPNRVLFMDRLGHDRAQTLRHEHL-LAVGILDLDGFK 541

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND  G A GD +L  + +R+   ++  D LAR+ G+ FG++L    +  ++ D    +
Sbjct: 542 QVNDHFGHAAGDALLQEMAQRLRREMRSGDTLARMGGDEFGLLLSDVGSLEQVEDACTRL 601

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +  P  L + EI +++SIG  S+        ++L++A+LA+Y AK  G +    F  
Sbjct: 602 LEVLRAPFYLGDEEIPLSSSIGLTSYPLDDSLPEDLLRHADLALYAAKAAGRDRYHWFDW 661

Query: 698 SSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +  +  ++       A++   L L Y P++ + +   VG+EALI+ DHP+ G +  +
Sbjct: 662 PMDKLQQEAMEVRKMTENALDRGRLLLHYQPVVEIGNG-PVGVEALIRLDHPERGLLPPA 720

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F    +   + + I  F+L        +W  Q    P+ + +NI++  LLD      ++
Sbjct: 721 AFAAALDAPRLTRHIGCFVLATALTQTQTWHRQG--MPLRVSVNISAHHLLDQRFLSDLR 778

Query: 816 ALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           A +       PS +++  +E+  + +   +R  L    ++G+ + LDDFGT  + L+YL 
Sbjct: 779 AALDAHPDLPPSAVEIEITETAPLLDFAGARETLLACNRLGVRIALDDFGTGNASLTYLQ 838

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P  T+K + S +       K  AI+  ++  A+ +   +IA+ +        L  + C
Sbjct: 839 KLPAQTIKIDQSFVRDIINDPKDYAIVSGVVTSARLLGLEVIAEGVETAEHAAMLGHLQC 898

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLV 960
             +Q   +A P+   +I   +++  PL+
Sbjct: 899 HCLQGYAIARPMAPEAIPGWIRQYKPLL 926


>gi|169828363|ref|YP_001698521.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
 gi|168992851|gb|ACA40391.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
          Length = 573

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/561 (24%), Positives = 245/561 (43%), Gaps = 37/561 (6%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471
            S  IV   D              I       + G     L    H   +  FR +  + 
Sbjct: 28  NSSIIVAITDRTGKITFVNDHFCKISKYTREELVGQDHRLLNSGYHP--KSFFREMWRTI 85

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                     E   RA D   +W+   I P  +  G   +YI I  DIT QK  ++ I  
Sbjct: 86  --GNGDMWNGEVCNRAKDGSLYWVKTTIFPFLDERGKPYQYIAIRVDITAQKD-IKKITH 142

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LTG+PNR+    RL      S      +  +  ID++++K IND LG  +GD  
Sbjct: 143 IAYHDELTGLPNRRKLEQRLENEFHQSRRSGE-KFALFFIDVNRFKHINDGLGHIIGDMF 201

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           LV ++ R+  +    +   R + + F +IL   N+  +I + A  +         +   E
Sbjct: 202 LVEMSNRLRNIDYTSNSFYRHNSDEFVMIL---NDVNRIEEMAKEIIGVFNESFVVDNYE 258

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
              + SIG + +     T  E+LKNA++AMY AK   GN    +R +        ++++ 
Sbjct: 259 FYASISIGISIFPDHANTVEELLKNADIAMYAAKSTRGNQYRLYRDNMDEANDKWLLLET 318

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++N  L L Y P I L  + I+G+EAL++W  P+ G+I    F+  AEE  +I  
Sbjct: 319 KLHQALKNDLLELHYQPKIDLKTDTIIGMEALLRWYDPELGHIPPDRFIPFAEECGLIND 378

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I +++L + +     W +  +   + + +NI+   +  +   E ++ +I++T   P  ++
Sbjct: 379 IGVWVLGKASAQAKLWNES-HNLRLRVAVNISPIHISTSGFVEMVKDVIAETGIDPQLLE 437

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E  ++   E     + +LR +GI+++LDDFGT  S L+YL   P D +K + + + 
Sbjct: 438 IEITEMSMLDYTEDLINTINQLRALGITISLDDFGTGYSSLNYLKKFPVDVLKIDRAFVR 497

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID-----------IKELTRMGCDYIQ 936
               ++   A++ ++I +A  +                         +  L   GC+Y+Q
Sbjct: 498 DIVPEKSGIAMISAMISLAHALNL-----------QVVAEGVEEEAELNVLREHGCEYVQ 546

Query: 937 DSHVASPLGFNSILKLLKERF 957
             + + PL       ++ + F
Sbjct: 547 GYYFSKPLSVEDFTNVIVQSF 567


>gi|228916381|ref|ZP_04079950.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228843291|gb|EEM88370.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 885

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 159/727 (21%), Positives = 314/727 (43%), Gaps = 26/727 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 874

Query: 951 KLLKERF 957
            LLK+ F
Sbjct: 875 TLLKKGF 881


>gi|116253698|ref|YP_769536.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258346|emb|CAK09448.1| putative sensory box GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 717

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 141/599 (23%), Positives = 262/599 (43%), Gaps = 18/599 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                     +          ++Q         + +          V      V+  D+ 
Sbjct: 121 TFEVLTYGREVRFEGRAAILAIVQDRTEVNAARRQMSDTRSLLDSIVDNLPVGVFVKDME 180

Query: 425 RDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
            D +          I+G+ +  + G           +  D FR             + +E
Sbjct: 181 ADGLYVLFNEACGDIVGMRAEHVVGQTD--RALFPPSQTDAFREQDRRAFEADTA-ISFE 237

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGI 541
             +  AD     +    R +    G   RY+ GI+ D+TE++     +   A  D+LTG+
Sbjct: 238 ETMLRADGVPRILRTVKRALPTPEGHAPRYLLGISQDVTEERTVEAKLAHLAMHDSLTGL 297

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR +F + +      +  D      ++ ID+D +K IND  G A GD +L  ++ R+ +
Sbjct: 298 PNRAAFSNHINQRAVEATADS--AIALLYIDVDHFKNINDSKGHAAGDALLCQVSERLLQ 355

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           L +  D++ARL G+ F ++L   +   +   FA  + K+++   +L      VT SIG A
Sbjct: 356 LAEEGDLVARLGGDEFAVVLE-LDEPERAGRFAQRLLKALSRAFDLDGAREHVTCSIGIA 414

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
                   +  ++++A+LA+Y AK  G +    +      +      +  +L  A+E  +
Sbjct: 415 LAPDHAGDADVLMRHADLALYAAKESGRSTYRFYETEMRLAAERRHVMTAELWEALEKRQ 474

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y PI++L ++ I G EALI+W HPK G ++  EF+ +AEE  +I  I  +++    
Sbjct: 475 FELHYQPIVQLDNDGIGGFEALIRWRHPKRGLVAPMEFIPLAEETGLIVPIGDWVIREAC 534

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R    W        + I +N++        L   + A + +T  +  R+++  +ESV + 
Sbjct: 535 RAAAGWPAH-----LRIAVNLSVSQFRHANLLSTVVAALDETGLNADRLEIEITESVFLT 589

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           + ++S   L  L+++G+ + +DDFGT  S LSYL   PFD +K + S ++G       +A
Sbjct: 590 DADQSLPRLRALKELGLRIAIDDFGTGYSSLSYLRSCPFDKIKLDRSFVSGIETDAGNLA 649

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+R+++ +      T +A+ I  E  +++L   G   +Q   +  P+  +    L+  R
Sbjct: 650 IVRAVVGIGSGFNATTLAEGIETEEQLQKLRAEGFSEVQGYLLGRPMPQHEAEALIHGR 708


>gi|328880499|emb|CCA53738.1| 8-amino-7-oxononanoate synthase [Streptomyces venezuelae ATCC
           10712]
          Length = 1075

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/539 (24%), Positives = 252/539 (46%), Gaps = 12/539 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +P   T+ G +   + G        +   D      +L           + ++++   
Sbjct: 105 YASPSAETMFGRSL--LPGTPLT--DLVAPADTAAALRVLSDARTRASVDARDDWKLLHG 160

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
            +    + +R   + + N  +   +    D+TEQ+K    +   AF D+LTG+PNR   L
Sbjct: 161 GSADLEVEVRCSNLRDEN-TVHGLVLTLRDVTEQRKLERELTHRAFHDSLTGLPNRVLLL 219

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +R+   L      ++    ++ +D+D +K +ND +G +VGD++LV++ RR+  +L+  D 
Sbjct: 220 ERVERALLR-GRRESTLTCMLFVDLDDFKVVNDTMGHSVGDELLVAVARRLTSVLRLTDT 278

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ARL G+ F +++     +      A  +  +++ P +L +  ++V+ S+G A+      
Sbjct: 279 AARLGGDEFAVLIEGARETRDAEALAAEIVHTLSQPFHLTDGAVSVSTSVGVATV-LDSA 337

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHP 726
            + E+L +A+LA+Y AK  G      F            +    +  A+ +    L Y P
Sbjct: 338 HAEELLGHADLALYAAKAAGKKRWRLFHPEFHSKLVARHELQAGMDTAIADHAFALRYQP 397

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+ + D    GLEALI+W H + G +   +F+ +AEE   I  +  ++LE  A DI  W+
Sbjct: 398 IVEVRDGAPAGLEALIRWPHARRGMVPPDQFIALAEESGHIMPLGAWVLEHAALDIARWQ 457

Query: 787 DQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                  P++  +N++++   D    EG++  +  +  +P  + L  +E+V+M    + R
Sbjct: 458 RARPQRAPLYASVNVSARQFRDPGFLEGVRRALRSSGLAPGSLVLELTETVLMRRDAQIR 517

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
             +  L+++G+S+ +DDFGT  S LSYL   P D +K + S +       +++A++  I+
Sbjct: 518 TTMAALKELGVSIAIDDFGTGFSSLSYLREFPIDVLKVDKSFIDNITTDPQQVALVEGIV 577

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            +A  +   ++A+ I  E     L  MGC Y Q    A P+  +     L    P  + 
Sbjct: 578 RIADVLGLQVVAEGIEHEEQRALLAEMGCRYGQGYLFARPMTAHQAESYLHRSAPAGER 636


>gi|86747577|ref|YP_484073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570605|gb|ABD05162.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 844

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/570 (24%), Positives = 259/570 (45%), Gaps = 14/570 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q  +A     Q   +  E Q L         W+  +   R   +P++  +LGL   + 
Sbjct: 264 ITQLEVARALLDQRTRALEEAQRL----GRIGTWNHRLDTGRTVWSPELYHLLGLDPAAF 319

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                    Y   +  +    I    V         + R+   D     M I  +     
Sbjct: 320 DPTYDGTKAYFLDDAAERMLEIQKRVVRTGTTE-AADIRILHGDGTPRDMAIICKAEI-R 377

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G ++  IG A D+T++K++   +   A+ D LTG+ NR  F  +L   L       + R
Sbjct: 378 DGKVVGLIGTAQDVTDRKEAERRLELLAYTDPLTGLANRALFKRKL-AGLFEQPISGDGR 436

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-E 624
             +++ID+D++K++ND LG + GD +L+ +   + + L     +AR+ G+ F ++     
Sbjct: 437 NALLLIDLDRFKEVNDSLGHSTGDSLLIHVASVLRQELDPQAFIARIGGDEFAVLTNGQC 496

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            ++      A  +   +++P+ L E E  + A+IG A       T+ +  +NA+LA+Y A
Sbjct: 497 ASADDPIALADRLIAKLSVPVELAEGEACIGATIGVAILPEHGATAEKASRNADLALYMA 556

Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G    + F      +    +     L  AVE+  L   Y P I L    + G EAL+
Sbjct: 557 KEAGRGRAQLFEPIYAEAVDQRLDLGRRLRQAVESGGLTTHYQPQIDLKTGRVSGFEALL 616

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS SEF+ +AE   +I  +  ++L    R + +W D    PP  + +N++ 
Sbjct: 617 RWSHPERGPISPSEFIPVAESTGLIVQLGHWVLRDACRQMRAWLDAGL-PPRSMSVNVSP 675

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLD 861
             + + +    + A++++T      + L  +E++ + + ++     L  L K+GI L LD
Sbjct: 676 AQIWNGDFEAVVAAVLAETGLPAELLCLELTENLFVDHTKQKVSSTLAALSKLGIQLALD 735

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S L YL  +PF+ +K + S + G     ++  +L  II ++  +  +++A+   
Sbjct: 736 DFGSGYSSLGYLTRLPFNCLKIDRSFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAE 795

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              ++  LT   CD++Q    + P+  +  
Sbjct: 796 LAAEVDLLTGFDCDFVQGYVFSPPITADQA 825



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 6/132 (4%)

Query: 407 QSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
              A+  +    W+ +         +P+ A++    +     P+         + RD   
Sbjct: 25  LRRAMRMARIGYWESYSAAATDFWISPEFASLFDFQTSKGSVPVDAMQQRRLADSRDVLH 84

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT----E 521
               +     R     E ++  +D +    ++      +++G + R  G   D+T     
Sbjct: 85  VHYAACWAEGR-PFAVETKLVTSDGRQLDCVVHGEAEFDASGRVQRVFGAVRDVTPETSA 143

Query: 522 QKKSLEGILCNA 533
            ++  E     A
Sbjct: 144 HRRLAESEQRLA 155



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 33/186 (17%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR------DRVTTTPDIATI 437
           F  ++ V       + +    +R +  V  + D  W+           D +     + T+
Sbjct: 131 FGAVRDVTPETSAHRRLAESEQRLADFVGTASDWCWETGPDHRLLPHPDLIDGNAALQTV 190

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
                    G    W      +++D       + +  +R    + +    +D     +  
Sbjct: 191 -------ASGGKARWELSYAPDEQD-AMARHKADMEAQRPFRDFVYTSIGSDGSRISICT 242

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +P+   +G  L Y G A+DIT+ + +                  R     R T  L+ 
Sbjct: 243 SGKPIFADDGSFLGYRGTASDITQLEVA------------------RALLDQR-TRALEE 283

Query: 558 SATDDN 563
           +     
Sbjct: 284 AQRLGR 289


>gi|124268042|ref|YP_001022046.1| sensory box/response regulator [Methylibium petroleiphilum PM1]
 gi|124260817|gb|ABM95811.1| sensory box/response regulator [Methylibium petroleiphilum PM1]
          Length = 754

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/597 (23%), Positives = 279/597 (46%), Gaps = 28/597 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    ++++L +      +     + + A   +    +DW   R  +  + +   + GL 
Sbjct: 124 LLAGRLRYLLRSSRTRLELERSKSKLARAQDLARMGSFDWRRDRSGLLFSVEGLRVFGLG 183

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            G   G +R+ +  +    R    ++L   +  R   L  +F V+  D +   + +   P
Sbjct: 184 PGDHLG-MRSLIRMVPAEHRQGCLSLLRDTLA-RSTVLATDFPVQLIDGRQRVVHVEAEP 241

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N +G++  Y GI  D+T+++ + + I   A  D LTG+PNR+  + R    ++ +   
Sbjct: 242 EFNEHGNLTGYTGIVQDVTDRRVAEDKIRHLANFDALTGLPNRRQLIWRAERAMEQAKRL 301

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL------------ 609
           ++ +  +++ID+D++K IND LG   GD++L+ ++RR+   ++  D +            
Sbjct: 302 NH-QVGLLLIDLDRFKVINDTLGHGAGDELLMEVSRRLRSCVRHSDQVVETGIDSVGLRA 360

Query: 610 -------ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                   RL G+ F  +L   +        A+ + + +  PI +  +E  VTAS+G A 
Sbjct: 361 HRSLEAVGRLGGDEFVALLPEVDADQDAERVALRILEVMREPIFVGGQECFVTASVGIAL 420

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720
           +     + +++L+NA++AMY AK  G N    +R        +++ ++  L  A+E  EL
Sbjct: 421 FPRDGASVADVLRNADVAMYSAKAAGRNAASLYRPHLAGKGREKLELESALHKAIEREEL 480

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P I +    +VG EAL++W       +   +F+ +AEE  +I  ++ + +    R
Sbjct: 481 VLHYQPKIDVRTARMVGAEALMRWKR-NGVLVPPGDFIPLAEETGLIVPMSEWAIREATR 539

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W+         I +N+ S+     +L   +Q   +    + S I+L  +E+ +M +
Sbjct: 540 QARLWQQHHG-IDTSIAVNLPSRLFERTDLVTHIQQAAAAHGVTHSCIELEITETGLMKD 598

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAI 898
            +     L RL +IG+ +++DDFGT  S L+YL  +P   +K + S +       +  A+
Sbjct: 599 LQNVIPALHRLNEIGVEISIDDFGTGYSSLAYLTTLPISELKIDRSFVRDLGVTLQSSAV 658

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +II +A+++   +IA+ +     ++ L R+GC  +Q    +  L    + + L +
Sbjct: 659 VTAIIALARSLGIRVIAEGVENLRQMEVLHRLGCSTMQGFLFSKALPPEDLEQWLAQ 715


>gi|213968212|ref|ZP_03396357.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301383782|ref|ZP_07232200.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060775|ref|ZP_07252316.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302131874|ref|ZP_07257864.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213927192|gb|EEB60742.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 730

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 142/571 (24%), Positives = 263/571 (46%), Gaps = 26/571 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V        + G ++  + G   +   
Sbjct: 154 AQAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAREVLGRTAHEIG 213

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +        R  +   +  +      E   R  +     + + +  ++ +N    
Sbjct: 214 IWTDTV-------QREFMIDELRQKGRMHHREMNGRDKNGAPLVLDVSVEFITLNN--TA 264

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI + K +   I   A+ D LTG+PNR   +DRL+  + L     NLR  ++ 
Sbjct: 265 CLLMNARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLF 323

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--- 627
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + S   
Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEH 383

Query: 628 --LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++   A  +R  +A P+ L    + VT S+G        +T +++LK A++A+Y AK
Sbjct: 384 VTHQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADIALYRAK 443

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +     +I G EAL++
Sbjct: 444 DSGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRTNQITGAEALLR 503

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L+   +       Q         + +N++
Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +    ++  E ++  + +     + +KL  +E +V+ N + + L +  LR +G+   +D
Sbjct: 564 PRQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMD 623

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ + 
Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVE 683

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               +  L R+GC   Q    + PL      
Sbjct: 684 TPEQLAFLERVGCYNYQGYLFSEPLPGPEFE 714



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +     R  LA+  +    WD DI   R+  +   + + G+ +       R +   +
Sbjct: 27  ERILEETRARLELALDLAQMGTWDLDITHSRLQASARASFLHGMDAQPFDDDSRLFFDRL 86

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +RD  R    + +  R+  LQ  +R +  D     +  R R   +  G+ ++  G  
Sbjct: 87  PAEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRARIYRDEIGNPVKLAGTL 146

Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539
            DIT+Q      ++ E     AF    D++T
Sbjct: 147 LDITQQCAQAALEASEEKFAKAFHSSPDSIT 177


>gi|229146087|ref|ZP_04274464.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228637427|gb|EEK93880.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
          Length = 785

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 310/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKESAVLIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 780


>gi|222081981|ref|YP_002541346.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221726660|gb|ACM29749.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 691

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 150/596 (25%), Positives = 258/596 (43%), Gaps = 18/596 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                     +          ++Q         + +          V      V+  D+ 
Sbjct: 94  TFEVLTYGREIRFDGKAAILAIVQDRTEVNAARRQVTDTRSLLDSIVDNLPVGVFVKDMA 153

Query: 425 RDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
            D          A  +G  +  + G         H      FR   +         + +E
Sbjct: 154 EDGRYILFNEACAAAIGRPAKDVVGKNDQ--AVFHAEQIAAFRQQDERTFETPS-TVSFE 210

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGI 541
             VR  D     +    R +    G+  RY+ GI+ D+TE++     +   A  D+LTG+
Sbjct: 211 ETVRGMDGVTRILRTAKRALPAPKGEAPRYLLGISQDVTEERGVEAKLAHLAMHDSLTGL 270

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F + +   +  +         ++ IDID +K IND  G A GD +L  + +R+  
Sbjct: 271 PNRAFFSESIVRQVASA--TPETPIALLYIDIDHFKHINDSKGHAAGDTLLRQVAQRLLR 328

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           L +  D +ARL G+ F ++L    ++ +   FA  +  S+A P +L      VT SIG A
Sbjct: 329 LAEKSDFVARLGGDEFALVLR-MTDADRAQRFADLLLLSLAAPFDLDGVREHVTCSIGIA 387

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSE 719
                   +  ++++A+LA+Y AK  G +    ++         R  +  +L  A++N E
Sbjct: 388 MAPDHADDADVLMRDADLALYAAKGSGRSTYRFYQTEMRLEAERRHQLTVELREALQNGE 447

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y PIIRL ++ + G EALI+W HP+ G I+  EF+ +AEE  MI  I  ++L    
Sbjct: 448 FELYYQPIIRLDNDGLSGFEALIRWRHPERGLIAPMEFIPVAEETGMIVPIGEWVLREAC 507

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R    W        + I +N++        L   + +++ +T   P R+++  +ESV++ 
Sbjct: 508 RTAARWPSH-----LKIAVNLSVYQFRHAGLLATVVSVLDETGLRPERLEIEITESVLLS 562

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
             E+S  LL  L+++GI + +DDFGT  S LSYL    FD +K + S + G       +A
Sbjct: 563 EVEQSLHLLRALKELGIRIAIDDFGTGYSSLSYLRSFAFDKIKLDRSFVAGIETDPGNLA 622

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+R+++ +A       +A+ I  E  + +L   G   +Q   +  P+       L+
Sbjct: 623 IVRAVVGIASGFNAMTLAEGIETEEQLGKLRAEGYSEVQGFLLGRPMPRQDAEALI 678


>gi|172039563|ref|YP_001806064.1| hypothetical protein cce_4650 [Cyanothece sp. ATCC 51142]
 gi|171701017|gb|ACB53998.1| hypothetical protein cce_4650 [Cyanothece sp. ATCC 51142]
          Length = 709

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 128/559 (22%), Positives = 254/559 (45%), Gaps = 28/559 (5%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +D ++ +  +  S + + + D     +                +H          H   
Sbjct: 169 LADFQKFASLIELSPNPILEIDYQGKLIYANSSAK---------LHFRDLKQTQMNHP-- 217

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               R + ++    +   L  E  +     Q       I  +      ++R      D+T
Sbjct: 218 --IVRGLFNNNESRQGNLLVREITI----GQVV-FEQHIHYLPQE--KLIRC--YLFDVT 266

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++++ E +   AF D LTG+PNR    + L+  L  +  + +L   ++++D+D +K IN
Sbjct: 267 QRREAEEILKYKAFHDELTGLPNRAFLHEHLSLALGNAQRNKSL-MAILLLDVDGFKNIN 325

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG ++GD +L    +R+   ++  D++ R  G+ F I+L       + A FA  + + 
Sbjct: 326 DTLGHSIGDLILKCFAKRLQSQVRQGDLVCRWGGDEFIILLSRIKEPKEAAQFAERLLEV 385

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              PI +    I + +SIG   +         +LK+A+LA+Y  K+ G N+ + +     
Sbjct: 386 FKHPITVEGNLIYLKSSIGITIYPEDGQDQETLLKSADLALYKTKNSGRNNYQFYHSKMA 445

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +    ++  L  AVE  E YL Y P + +   +I G+EALI+W+    G IS  +F+
Sbjct: 446 SEMKAEFELENALHKAVEQEEFYLHYQPQVNIRTGKIEGIEALIRWESSSLGPISPQKFI 505

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I+ I  +++++  +   +W++      + I IN++ +      L + +  ++
Sbjct: 506 PLAEKTGLIQPIGEWVIKQACQQAKTWQNMGLEF-LKIAINLSPQQFQQFNLIDRINEIL 564

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P  ++L  +ES +M N + +R  L   R + IS+++DDFGT  S L+YL   PF
Sbjct: 565 HSTQLPPQFLELEVTESSLMQNIDLTRETLKVFRDMEISISMDDFGTGHSSLAYLKQFPF 624

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K + S +          AI+ +I+ +++ +   ++A+ I     +  L  + C+ +Q
Sbjct: 625 QTLKIDRSFIKDLHNNTQEQAIVAAIMTLSRGLNLRVVAEGIENTEQLNILKTLECEQMQ 684

Query: 937 DSHVASPLGFNSILKLLKE 955
               + PL    ++  L  
Sbjct: 685 GYFFSRPLSAQKMMFFLSN 703


>gi|228955813|ref|ZP_04117792.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228803860|gb|EEM50500.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 620

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/588 (24%), Positives = 261/588 (44%), Gaps = 11/588 (1%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L   L +    +  TV Q        S  +  + ER         D +   D     +  
Sbjct: 35  LTKTLKVFNNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNI 94

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
               + +LG  S  + G            D+      +          LQ   +     +
Sbjct: 95  NQAGSMLLGKESAVLIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKD 152

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  + I P+    G       +  DIT  K+  E I   AF D +T I NR  F   
Sbjct: 153 ILFWY-VTIVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQE 210

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   +  +    + +  ++ ID++++K IND LG ++GD VL  + +R    L     LA
Sbjct: 211 LDRSIKRAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLA 269

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F II+ ++    ++ D    + +    P  + +    ++ SIG A +    I +
Sbjct: 270 RIGGDEFAIIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINT 328

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           + +L++A++AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I
Sbjct: 329 TTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQI 388

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                +++G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W   
Sbjct: 389 DSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA 448

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + + IN+++ +    +  + + + I +     + I L  +E + M + + +   L
Sbjct: 449 -GFSNLKMGINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKL 507

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+  G+ L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A
Sbjct: 508 KALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLA 567

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +   +IA+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 568 HTLNMKVIAEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 615


>gi|237653319|ref|YP_002889633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thauera sp. MZ1T]
 gi|237624566|gb|ACR01256.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thauera sp. MZ1T]
          Length = 1251

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 136/586 (23%), Positives = 260/586 (44%), Gaps = 11/586 (1%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++ +       V+       G+ +   R    V    ++++  D            A I 
Sbjct: 662  LMTLVGNAFSGVIERKRAHDGLQASEARYRSVVESVREVIFQLDGRGRWTFLNKAWADIT 721

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            G A     G  R++L ++H + RD    +++  +        +  R R A   F W+ + 
Sbjct: 722  GYALADSLG--RHFLAHVHADHRDQHGEMIEQVLAGELESCTHAARYRCAGGGFRWLEMS 779

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             R   ++ G      G   DIT+QK+    +   A  D LTG+PNR    DR+   +  +
Sbjct: 780  ARRAFDAQGRPAGLSGTLTDITQQKEHESRLEYIAHYDALTGLPNRVLLSDRMQRGMAQA 839

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                  +  +  ID+D +K IND LG   GD +L  +  R+   L+  D ++RL G+ F 
Sbjct: 840  RRRGQ-QLALAYIDLDGFKAINDTLGHQAGDQLLAVVAARMKAALREGDSISRLGGDEFV 898

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNA 677
             +L+   +          +  +++  + L  +E+ V+ASIG   +  ++   + ++L+ A
Sbjct: 899  ALLLDLPDVEACELLVRRLLGAVSQAVQLAGQEVKVSASIGLTLYPQAEEVDADQLLRQA 958

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            +LAMY AK  G N    F  +  RS   R      +  A+   E  L+Y P + +    +
Sbjct: 959  DLAMYQAKLAGKNRYHLFDTAHDRSQRGRHQTLAAIRGALRTGEFRLLYQPKVNMRSGAV 1018

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            VG EALI+W HP+ G +    F+ +  +  +   I  +++E+    + +W+       + 
Sbjct: 1019 VGAEALIRWRHPRQGELEPGGFLPVVADHPLAVEIGDWVIEQALAQVAAWQHAGLF--LP 1076

Query: 796  ILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+ ++ L   +    +QA +++     P  ++L   E+  + +  +   ++    +I
Sbjct: 1077 VSVNVGARHLQAADFMPRLQAALARHPDLGPGALELEVLETSALESIAQVTRIVEACARI 1136

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            G+S  LDDFGT  S L+YL  +P   +K +   + G     + +AIL++I+ +A   +  
Sbjct: 1137 GVSFALDDFGTGYSSLAYLKRLPAARLKIDQLFVRGMVEDAEDLAILKAIMGLADAFKRE 1196

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +IA+ +        L ++GC+  Q   +A P+    I   +    P
Sbjct: 1197 VIAEGVEEVEHGSLLLQLGCEVAQGYGIARPMPAEEIPAWVANWSP 1242



 Score =  101 bits (251), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 7/186 (3%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            I  +GL  A     D+ +I       +    ++I     Q   A     + +       
Sbjct: 177 LIGMVGLANAAQGY-DHALIVELEPMLVTCASMIIALRTEQDRKAAR---RALEESERHF 232

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
                    ++W  D                G       G    W+  +H +D +     
Sbjct: 233 RELANSKSALIWTSDADGGCNYFNDTWLQFTGRTLEQSQGT--GWVADVHADDLEGCLDA 290

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                  RR   + E+R+R A   + W+     P  +++G  + YIG   DITE+K+   
Sbjct: 291 WQRAFA-RRESFRMEYRLRHAAGGYRWISDEGNPRRDADGAFVGYIGYCYDITERKRGDL 349

Query: 528 GILCNA 533
            +   A
Sbjct: 350 ALDALA 355


>gi|46578838|ref|YP_009646.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448250|gb|AAS94905.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
            str. Hildenborough]
          Length = 1072

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 11/554 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465
              L    + + +   D     +   P   TI G       G   R      H  DR  + 
Sbjct: 507  FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRH--DRGFYE 564

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +  S   + RG  + E   R  + + +   + I  + + +G    Y+ + +DI++ K  
Sbjct: 565  RLWHSL--HERGAWEGEIWNRRINGENYPEWLSISAIRDESGATTNYVALFHDISDLKAK 622

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               I      D LTG+PNR   L+RL   L        L   ++ IDID +K IND LG 
Sbjct: 623  EAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRL-CGLLYIDIDNFKTINDSLGH 681

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              GD  +  +   +  L++  D L+RL G+ + I++ +     ++   A  +    + PI
Sbjct: 682  EAGDKFIAEVAEHLTLLIRPEDTLSRLGGDEYVILVANPGEEREVVLVAERILHHFSQPI 741

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
             LL+RE+ V  SIG A   +      E+L NA+LAMY AK +G N  E F   +      
Sbjct: 742  ALLDRELHVGLSIGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERFSPHLHDRIRS 801

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R+ ++  L  A+ + E+   + P + L    IVG EAL +W  P    IS  EF+ +AE+
Sbjct: 802  RMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRISPGEFIPVAED 861

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
            L +I  +   ML        +  D+   P I + +N++       +L   + A +  T  
Sbjct: 862  LGLIFDLGEHMLRSSLAFTRALMDEGL-PDITMAVNLSLVQCRHADLVGRVLAALRDTGV 920

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             P R++L  +ES +M +  R+   L RL  +GI+L +DDFGT  S L +L ++P  T+K 
Sbjct: 921  PPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGTGYSSLYHLKHMPLHTLKI 980

Query: 884  NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +           I  +++ MA+N++  +IA+ +     +  L   GC  +Q    +
Sbjct: 981  DQSFVRDLPHVAGSRTIALTMLAMARNLDLDVIAEGVETGAQMHFLRDHGCRVVQGFLFS 1040

Query: 942  SPLGFNSILKLLKE 955
              +  + +  LL+ 
Sbjct: 1041 PAVPGDRLFDLLRR 1054


>gi|148546431|ref|YP_001266533.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148510489|gb|ABQ77349.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
          Length = 861

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 141/564 (25%), Positives = 263/564 (46%), Gaps = 15/564 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +Q + +  +R       + D +W+ D  +     +   A + G       G   N L   
Sbjct: 299 NQALEASEQRFRAVAESASDWIWETDRHQRLTYLSQRFANVTGYPVDGWLGHPLNQLLAC 358

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  +   L +    +   L+  +R    + Q  +  I  R +   +G  + + G A
Sbjct: 359 DTTPLSPWLDALATADPQQLANLRCTYR--DQNGQNRYCRISARAIW-RDGKAIGFRGTA 415

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT++  +   I   +  D LTG+ NR      L   L   +    L     ++D+D +
Sbjct: 416 SDITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGSDSPPLTLL--LLDLDNF 473

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG A GD VL  +  R+ +  +  D++ARL G+ F ++L   +NS +I  F   
Sbjct: 474 KPINDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSEIDRFCAR 533

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   +  PI    + + + ASIG A   +    + E+++ A++A+Y AK  G N    F 
Sbjct: 534 LIGLLQQPIVFESQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQAKADGKNTWRYFV 593

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R  ++ DL  A+ N E  L Y P  RL D  IV +EAL++W HP+ G +  
Sbjct: 594 AEMNQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALVRWRHPQEGLLGP 653

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I A+  ++L    R    W        + + +N++    L +++   +
Sbjct: 654 DTFIPLAEQSDIIVALGRWVLREACRTAHDWPA-----DVLVSVNLSPAQFLRSDVVADV 708

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++  T +   R++L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL 
Sbjct: 709 REILLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLR 768

Query: 875 YIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             PFD++K +   ++G         A++++II + + +  T+ A+ +  E  +K L    
Sbjct: 769 TYPFDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEGVESEHQLKALENDR 828

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C  +Q  +++ PL    +  LL +
Sbjct: 829 CHEVQGYYLSMPLDSAGLAALLHQ 852


>gi|228928797|ref|ZP_04091831.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935047|ref|ZP_04097877.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824617|gb|EEM70419.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228830882|gb|EEM76485.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 885

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 874

Query: 951 KLLKE 955
            LLK+
Sbjct: 875 TLLKK 879


>gi|218904877|ref|YP_002452711.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|218540040|gb|ACK92438.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
          Length = 908

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897

Query: 951 KLLKE 955
            LLK+
Sbjct: 898 TLLKK 902


>gi|303249050|ref|ZP_07335294.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302489573|gb|EFL49514.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 809

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 151/638 (23%), Positives = 282/638 (44%), Gaps = 14/638 (2%)

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
            T   +             +   +   +        +  RL      P  V  + L    
Sbjct: 172 GTLPGVAFATLFAPEDRPRLDRLLPAALGGETARARVRGRLPGGGTIPLAVTCVPLPAGE 231

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
               +++        ++    D E     +    +  +  D     +        I GL 
Sbjct: 232 GPRFLLEASPTRAPGARPDQPDLE-----LERCPEGFFVLDAEDRLLAANAAAWGIFGLC 286

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +     P    +      +     +     V      ++ E  V + D     +++ + P
Sbjct: 287 A---PPPHGALVTKTLPEELATALSRDAGRVIAWNEPVRKEVTV-SIDGADKTLLLALFP 342

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           M +  G  L   G+  DIT++K+    +   AF D LTG+PNR   LDR+   ++ S   
Sbjct: 343 MGHDEGSRLAG-GLVTDITDRKRLESQLAHMAFHDPLTGLPNRSLCLDRIRQAIERSKRR 401

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           DN +  V+ +D+D++K IND LG  +GD +L  +++R+ E ++  D ++RL G+ F ++L
Sbjct: 402 DNYQYAVIFLDLDRFKVINDSLGHHMGDRLLEGVSKRLRECVRGLDTVSRLGGDEFVVLL 461

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +  +I      +R ++       + +I VT S+G            E+L+NA +A+
Sbjct: 462 EETGSYREIVRIVKRIRSAVGEVFQFCDHDIHVTCSMGIVISPCLYDKPEELLRNANIAL 521

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           + AK  G N  + F           + ++  L LA++  E +L Y PI+ L D  + G E
Sbjct: 522 HRAKGEGRNRFKVFNTRMLEDAIRLMDLESALRLALDRGEFFLDYQPILSLSDRSLQGFE 581

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILI 798
           AL++W  P  G  S  +F+ +AE+  +I  + L++LE   R ++ W+        + + +
Sbjct: 582 ALVRWRRPGKGVASPKDFIPVAEDTGLIVPLGLWVLEEACRTMVRWQTDFPQVLAMSMSV 641

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++K L    L E ++ ++  T   P  +KL  +E+V+M NPE S L L RL+ +G+ L
Sbjct: 642 NLSAKQLTQPTLVEDVERILRATGLDPHALKLEITETVIMDNPEVSILRLKRLKALGVRL 701

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LSYL   P DT+K + + ++         I+ +++ +A ++   ++A+ 
Sbjct: 702 SVDDFGTGYSSLSYLQRFPIDTLKVDRTFVSEIEANENRKIVGAVVALAHSLGLDVVAEG 761

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  E     LT   C+  Q    + P+    + ++L  
Sbjct: 762 VELEAQSAVLTDFACEAGQGFLFSRPIAREDVERMLDS 799


>gi|58616411|ref|YP_195541.1| sensory box protein [Azoarcus sp. EbN1]
 gi|56315873|emb|CAI10517.1| sensory box protein [Aromatoleum aromaticum EbN1]
          Length = 728

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 123/578 (21%), Positives = 241/578 (41%), Gaps = 13/578 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448
           V       +         +     S + +   D     +        I G     + G  
Sbjct: 137 VFQDITERKRTDEALRLWASVFANSREGIAITDRNGIILDVNEAFVRITGYGREEVIGQN 196

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R      H  D   +  + +S   Y+      E   R  D + +   + I  + +   +
Sbjct: 197 PRILQSGRH--DSAFYAGMWESL--YKASNWCGEIWNRRKDGEIYPQWLNISAVRDEESE 252

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  YI +  D+++ K + + +   A+ D LTG+ NR    D +   +  S   ++    +
Sbjct: 253 VSHYISVFMDLSQIKSNEKRLELLAYFDPLTGLANRTLLADHMRMAIARSRR-ESTLFAL 311

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D +K +ND  G  VGD  L  + +RI  +++  D +ARL G+ F I++       
Sbjct: 312 GYLDLDGFKPVNDQFGHEVGDQFLQEIAKRIKSVVRGDDTVARLGGDEFVILVQGLRKPE 371

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +       +   +  PI L    +T T SIG   +   +     +L++A+ AMY AK  G
Sbjct: 372 ECHHTFERLLAKLEEPIQLNGHHLTATGSIGVTLFPCDEADPDTLLRHADHAMYQAKEAG 431

Query: 689 GNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +  +          +  + E +  A+   E  L Y P + L    ++G+EALI+W  
Sbjct: 432 KNRIHLYDTEFDVEVRVQRELVERIEHALSEREFLLFYQPKVDLRRGRVIGVEALIRWQD 491

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +  S F+   +   + + I+ ++L      ++ W        + I +N++   L 
Sbjct: 492 PDRGLLPPSAFLPQIQNHLVSQKIDQWVLSEAVAQLMLWHAIGLD--LSISVNVSGLSLQ 549

Query: 807 DNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            ++    +  L++     + SR+++   E+V + + E    ++ R +  GI   LDDFGT
Sbjct: 550 THDFMNTLAKLLAAHPEINRSRLEIEVLETVALDDIEHISGIISRRQAEGIRFALDDFGT 609

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L YL ++P D +K + S +      E+   I+  +I +++  +  ++A+ +     
Sbjct: 610 GYASLRYLKHLPADVLKIDQSFVRDMLNDEEDRVIVEGVIGLSRAFKREVVAEGVETLEH 669

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              L  +GCD+ Q   +A P+  +  L  L+   P  +
Sbjct: 670 YLCLMELGCDFAQGFGIARPMPASEFLPWLENWLPPTE 707



 Score = 95.0 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +D E   L V    D +   D         P +  ILG +   + G     L +   
Sbjct: 23  EMQADEEMYRLIVNEISDGILVLDADFVARFANPAMLRILGYSPDELDGVWAGDLVWSEA 82

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D   F    +       G   YE R R  D    W  I      + +G     + +  D
Sbjct: 83  EDLGRFAEETEKRRRGESG--NYELRWRRKDGSARWSRISATARFDPDGQFDGSLIVFQD 140

Query: 519 ITEQKKSLEGILCNA 533
           ITE+K++ E +   A
Sbjct: 141 ITERKRTDEALRLWA 155


>gi|301055239|ref|YP_003793450.1| sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|300377408|gb|ADK06312.1| sensory box/GGDEF family [Bacillus cereus biovar anthracis str. CI]
          Length = 908

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLH--WNRWHAKVGYITFSGIACIAILFCMS- 300
                          + +SS+   +++ YL+   +     +  + +     +  +     
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTEAITLLRLLYRIPILLIAIAGSIS 250

Query: 301 ------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                   Y +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 ENRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND  G + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTHGHSAGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSQSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897

Query: 951 KLLKE 955
            LLK+
Sbjct: 898 TLLKK 902


>gi|54309271|ref|YP_130291.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9]
 gi|46913703|emb|CAG20489.1| hypothetical protein PBPRA2087 [Photobacterium profundum SS9]
          Length = 1053

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/548 (25%), Positives = 250/548 (45%), Gaps = 9/548 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             S AV  S + V   D                G+ S    G     L           + 
Sbjct: 494  LSHAVEQSDNTVLITDKNGIIEYVNHSFEAFTGITSAQAVGRDSRTLMKGSNETTSEIKH 553

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            I       R   +      + +DN   +    I P+ N  G I  YI    DITE+    
Sbjct: 554  IRQQLKAGRT--INRVITRKKSDNTVCYEDETISPIRNDTGKISHYISTGKDITERVLFE 611

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
              +   A  D LT +PNR   L  +   +  +         V  ID+D +KKIND LG  
Sbjct: 612  SKLHKLAHYDLLTELPNRLLLLQHIEQAITNAEEM-KTSVVVFNIDLDYFKKINDSLGHD 670

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            VGD VL+++ +RI   L+  D+LARL G+ F I++ S+ +S  IA  A  +  +I   ++
Sbjct: 671  VGDKVLITIAKRITRSLRDEDVLARLGGDEFAILIQSDTSSQSIATLAERIINNICASLS 730

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
            + E+ +++TAS+G A +  + + S  +LKN+++A+YHAK +G N    F          R
Sbjct: 731  IEEKSLSITASMGIAVYPENSVDSDALLKNSDIALYHAKDQGRNRYCFFTPQMGIESVQR 790

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            + ++ DL  ++   +    Y P +     ++ G+EAL++W + +    S    + I E  
Sbjct: 791  LQLESDLRKSLGTDQYTFFYQPKVNAKTHKVCGIEALLRWKNEEGQIQSPLGIIPILENS 850

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  +   ++ +    +  W+       +   +NI+++ LL +++ + +   ++ +  +
Sbjct: 851  GLIVNVGETLINQACEQLAIWQSNGLD--LHFALNISARQLLHSDIVDTVYKAVTMSGCN 908

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            P  ++L  +ESVVM + + +   L +L  +G+ + +DDFGT  S L+YL   P   +K +
Sbjct: 909  PHYLELEITESVVMADVKLAFDKLIKLEALGVKIAIDDFGTGYSSLAYLSRFPIHILKVD 968

Query: 885  GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
               +      +  + I RSII +A N+   ++A+ +  E  IK LT +G +  Q  +   
Sbjct: 969  REFVQDLPMNKDSVTITRSIIELAHNLGMLVVAEGVENEGQIKFLTGIGVEEFQGYYFGK 1028

Query: 943  PLGFNSIL 950
            P+  +   
Sbjct: 1029 PMPIDEFE 1036



 Score = 39.2 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 5/118 (4%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG----YFSQG 399
           W +I    +   +         II+ A  G LV+ +I     +  H+           Q 
Sbjct: 301 WTVISRVNMASLVTELSFSQQRIIKFATFGILVMALIAGCIVLAWHLFQQLIHEKKLKQE 360

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           I  + +R +  +  + D +   +   +          +  +   +     +N    +H
Sbjct: 361 IEDNAQRYASVLKNAPDGLMTLNNRLEITALNHSAERVFNIT-DTAEAIGKNIYDIVH 417


>gi|54297266|ref|YP_123635.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris]
 gi|53751051|emb|CAH12462.1| hypothetical protein lpp1311 [Legionella pneumophila str. Paris]
          Length = 792

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/787 (21%), Positives = 316/787 (40%), Gaps = 42/787 (5%)

Query: 182 KDTVNSFTLYR---GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238
            +      L+      I G A  + I     + V    +LI      +V          F
Sbjct: 23  IEKEQVKLLFDQVGMAISGEALAVTILPIALWSVTNHELLIIWMIFTYVFSDLYKSMLLF 82

Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC 298
                             +   +SS L       +        +  I    +        
Sbjct: 83  YYNKQPTLFSTEKWLFLFNLGVVSSGLAWGFASSIMIPATS-TLHQIFVVFLITGVTAAA 141

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
            S Y P+  +         +V  +  F I+   KG    V L+  +  I        M  
Sbjct: 142 NSLYSPVRLSY-----FLFLVTAFVPFTIWLFSKGQ---VYLLLGFCGIIY---MGIMLF 190

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
                N I+   L     +  +     +++  +     ++ +          +  + D +
Sbjct: 191 ISYYSNRILINTLKMRFKISNLNSTKDILEKKVVDR--TKELEKILALTKSTLESTADGI 248

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL------PYIHINDRDNFRTILDSFV 472
              D+  +          + G++ G +                 +  +   F   +    
Sbjct: 249 LVVDLKGNIEFCNQQFLKMWGISPGFIDSHNDTETIQYVLNQLKNPEE---FLKQIKELY 305

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +     E      D +      R       +  I+  +    D+T        +   
Sbjct: 306 NNPKQESFDELHF--KDGKIF---ERYSQPHWLDNKIVGRVWSFRDVT----LSTRLAYQ 356

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D+LTG+PNR +  DRL   ++      N   +V+ +DID +K IND LG   GD +L
Sbjct: 357 ANHDSLTGLPNRTALYDRLDHAINYCKRL-NTSLSVLFLDIDNFKLINDSLGHDAGDILL 415

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              +RR+   ++  D +AR  G+ F ++L+       +   A  + K++A PI L  +E+
Sbjct: 416 YEFSRRLKGCIRHSDTVARFGGDEFVLLLM-TTEPKDVILVAQNILKAVAQPIKLPTQEV 474

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--ED 710
            VT SIG + +    I +S +LKN++ AMY AK  G N+ + +  S  +     ++    
Sbjct: 475 IVTTSIGISLFPKDGIDASTLLKNSDTAMYLAKKEGRNNFQFYNNSINQQSLKRLEIQTQ 534

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A++N+E +++Y PI  L   E+VG EALI+W HP  G +S  EF+ IAEE  +I  +
Sbjct: 535 IHNAIKNNEFFILYQPIYNLRSGELVGAEALIRWGHPAIGLLSPDEFIPIAEETGLINQV 594

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L        +W+    +P I I IN++ + L ++   E  ++++ ++   P  +++
Sbjct: 595 GEWVLRNACIQNKTWQ-LMGLPHISISINVSWRQLKNSNFIEIAESVLKESRLDPQYLEI 653

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ES ++         L ++ ++GI + +DDFGT  S LSYL   PF+ +K + S +  
Sbjct: 654 EFTESTMIQKSTPIDSTLIKISQLGIKMAIDDFGTGYSNLSYLKTFPFNKLKIDRSFIQN 713

Query: 891 --STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +     +I+ +II MA ++E  ++A+ +        + + GCD +Q      P+  + 
Sbjct: 714 CTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQGFLYGLPVKADK 773

Query: 949 ILKLLKE 955
            +KL+++
Sbjct: 774 FVKLMQK 780


>gi|170727095|ref|YP_001761121.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169812442|gb|ACA87026.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 637

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 143/557 (25%), Positives = 262/557 (47%), Gaps = 11/557 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER  LA+  +   VW+ +I  D    +  +  + G +   +    +N L +IH  D+
Sbjct: 77  NAKERFQLAMRATSAGVWERNIDEDAWYFSDRLIALFGYSREELLFGFKN-LSFIHNEDK 135

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +L +     +    +E RV  ++ ++ W  I  + + N  G+++R  G  +DI E
Sbjct: 136 KPLLHVLKNHFRNGKA-FDFECRVLTSEGRYKWFWIVGQAVWNDKGEVVRIAGSFSDIDE 194

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ + +   A  D+LT +PNR  +  +L   L L+  + +    V++ID++ +K++ND
Sbjct: 195 RVENSKLVEKMAHYDHLTMVPNRVLYNQKLDIALSLADKEQS-HLAVILIDLNDFKQVND 253

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG + GD +L  +  +    +   DI+ARL G+ F I+L +  N   +      + + I
Sbjct: 254 TLGHSAGDHLLQHIANQFKLNISESDIVARLGGDEFSIVLTNIANRQAVVTKCEQVLEII 313

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRV 697
           + P    +  I    S+G A +    +T  E++ NA+LAMY AK       G        
Sbjct: 314 SRPFYYQKNLIIPKISMGIALYPEYGMTRDELMVNADLAMYKAKGEKHMGSGFQFCEQEH 373

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +   +R  +  +LC A+  +E ++ + PII L + E+   EALI+W H   G +   +F
Sbjct: 374 INKNMERTELSSELCEAITENEFFMHFQPIIDLSNGEVTFAEALIRWKHTNKGVLLPEKF 433

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I  +    +E +A+ I        +  +   INI+    L     E ++ +
Sbjct: 434 ISIAEDSGLITRLGKLSIELVAKQIDRMMAAKRLQKLT--INISPSHFLSQSFMEDLKEI 491

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S      S I +  +E V + N E ++  +  L  +GI+++LDDFGT  S   YL  +P
Sbjct: 492 LSVYPKMSSFITIEITEVVFLLNMEVAKKTVIELHDMGITISLDDFGTGYSSFKYLQQLP 551

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I  +II +A ++E  +IA+ +     +  L    CD+ 
Sbjct: 552 IDVIKLDCSFIAELDIDPSHRNIASTIIELAHSLEIKVIAEGVETNSQLVFLQDHHCDFA 611

Query: 936 QDSHVASPLGFNSILKL 952
           Q S+   PL     L +
Sbjct: 612 QGSYFFKPLSVIDFLHM 628


>gi|71736110|ref|YP_274174.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556663|gb|AAZ35874.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 729

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 149/577 (25%), Positives = 267/577 (46%), Gaps = 26/577 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PN    +DRL+  + L     NLR  ++ +
Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNCALLMDRLSQQVSLLQ-HQNLRGALLFL 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----- 626
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   +      
Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 385 IQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           +HP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 505 EHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ +  
Sbjct: 625 FGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLNVIAEGVET 684

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  L R+GC   Q    + PL       LL +R 
Sbjct: 685 PEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 721



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R  LA+  +    WD DI  +R+  +   + + G+A+       R +   
Sbjct: 26  AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +R   R +  + +  ++  LQ  +R +  +     +  R R   N +G  ++  G 
Sbjct: 86  LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145

Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539
             DIT+Q      ++ E     AF    D++T
Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177


>gi|297569590|ref|YP_003690934.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925505|gb|ADH86315.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 724

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 121/583 (20%), Positives = 235/583 (40%), Gaps = 30/583 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +          +   G+ V         ++         G     + G     + +
Sbjct: 145 AEERLRRSEYFFHAILESLGEAVVVIGRDMRIISANQGYRHQTGREDEEIIGRHCYEISH 204

Query: 456 IHI-----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-I 509
            +       +      ++  F         +  R    +    ++     P+   +G  I
Sbjct: 205 GYSRPCWLEEEGCVCAVIRCFQDGSHHTAIHTHR--DKEGNPIYVETNAYPLRPGDGQMI 262

Query: 510 LRYIGIANDITEQKKSLEGILC-------NAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +    DITE K   E            AF D LTG+PNR+  LDRL      S    
Sbjct: 263 YAAVETIRDITELKLMEEEKQRKEVEVYRLAFYDPLTGLPNRRLLLDRLGQAFAASERTG 322

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL- 621
                ++ +D+D++K IND  G   GD +L    RR+   ++  D ++R  G+ F ++L 
Sbjct: 323 Q-HGALLFLDLDRFKNINDTRGHQAGDLILREAARRLRATVREDDTVSRQGGDEFVVLLQ 381

Query: 622 ----ISENNSLKIADFAIAMRKSIAMPINL----LEREITVTASIGFASWTSSKITSSEM 673
                      +    A  +R +++ P        +    ++ASIG   +   ++++ ++
Sbjct: 382 YLATDDATAIKQAGRVAEKIRLALSKPFQFSECQGDCRFHLSASIGVTLFVGHQLSAEDL 441

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV--ENSELYLVYHPIIRLM 731
            K A+ AMY AK  G + V     +  ++     + +  L    +     L Y P +   
Sbjct: 442 FKYADTAMYQAKQAGRDTVRFHDPAMQQALEEAEELERELRRAIDEEHFALHYQPQMD-A 500

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              ++G EAL++W HP+ G I+   F+ +AEE  MI  I  ++L      + +W  +   
Sbjct: 501 HGRLLGAEALLRWVHPERGLITPLAFIPLAEENGMILPIGSWVLHAACAQLAAWSGRPGQ 560

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + +N++ +          ++ +I  T   P R+KL  +ES+V+ +   + + + +L
Sbjct: 561 ENFRLAVNVSPRQFHQPNFVGEVEEVIGSTGIDPRRLKLELTESLVLADLNDTIVKMEQL 620

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R +G+   +DDFGT  S L+ L  +P + +K + + +       +  AI+ +II M + +
Sbjct: 621 RALGVGFAMDDFGTGYSSLAKLKQLPLEQLKIDRAFIRDLENDPQDAAIVETIIAMGRTL 680

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              I+A+ +  E  +  L + GC   Q  + + P+      K 
Sbjct: 681 GFEIVAEGVENEQQLHFLQQHGCHMFQGYYFSPPVSAAKFEKF 723


>gi|269104164|ref|ZP_06156860.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160804|gb|EEZ39301.1| hypothetical protein VDA_000319 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 734

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 155/589 (26%), Positives = 283/589 (48%), Gaps = 10/589 (1%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
              +  I  L+ + V+ + L +   +Q      ++ SLA+    + +   D+  +     
Sbjct: 147 QVEMEAIYSLMSYFVLLYTLKSTSVNQSPSITWDKLSLAINQCSETIVITDLRGNIEYVN 206

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
            +     G  +  + G     L       RD +R +  +       R Q EF  R +   
Sbjct: 207 DEFERSTGYKAQDVLGKNPRVLQS-GKTTRDTYRDLWKTLRSGE--RWQGEFINRKSCGS 263

Query: 492 FHWMIIRIRPMS--NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            +    RI P+   N +G +  Y+ I  DITE K +   +   A+ D+LTG+PNR  FL 
Sbjct: 264 EYVEFARITPIRQENGDGSVTHYMAIKKDITETKATRNQVEKLAYYDSLTGLPNRALFLK 323

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL  +L+  A    L  ++M ID+D +K+IND  G   GD +L ++ + I  +L+    L
Sbjct: 324 RLKKLLNDDAGSSQLPLSLMFIDLDHFKEINDTQGHDHGDCLLQTIGQTIRSILESHHTL 383

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F +I     ++ +    A  + ++I+ PI L  + I+V ASIG         +
Sbjct: 384 ARLGGDEFVVIAPD-TDAEQAQTIAYKLHQTISQPIPLKGQNISVGASIGITVCEKQGPS 442

Query: 670 SSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
            S +LK A++AMY AK +G G  +    +    + ++ +   L  A+   +L L + P I
Sbjct: 443 VSTLLKQADIAMYRAKAQGNGFCLYLPEMELALNRKITLARKLLSAIRQDKLALNFQPFI 502

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L  ++ VG E L++W     G IS +EF+ +AEE  ++  I+ +++    R ++SW++Q
Sbjct: 503 DLNSQQCVGAEVLLRWFDDDLGWISPAEFIPLAEERHLVSEISNWVIRHTCRQMLSWQNQ 562

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
             +    + INI+++++      + +  L+ +   SP  + +  +ES V+  P  +   +
Sbjct: 563 GYVLNGRLSINISAQEIGQESCAQRIIQLVEEEGISPYLLDIEITESAVVVCPHLAEDDI 622

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
            +L K G ++++DDFGT  S LS L +   + +K + S +      +    I+ +II +A
Sbjct: 623 NQLAKAGFTVSIDDFGTGYSSLSKLKHFSVNKLKIDRSFINELLIDDANRKIVTAIIAVA 682

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
           K++   ++A+ +  +     L+ MGCD+ Q      PL  +   +  LK
Sbjct: 683 KSLCLQLVAEGVEDKQQEALLSEMGCDFAQGYLYTKPLANDQFARYWLK 731


>gi|299134767|ref|ZP_07027959.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298590577|gb|EFI50780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 904

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/616 (22%), Positives = 264/616 (42%), Gaps = 25/616 (4%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I++                  ++    +   + + +++ F V + +       Q +  + 
Sbjct: 298 IVMIATRTVDSALADWHEQTRVLVLIALAASIAVALIVLFIVRRFISQHNAAQQRLMLEK 357

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R   AV      +  +D     V        + GL + S+     +    +        
Sbjct: 358 KRLDTAVNNLKQGLLLFDANHRLVIFNRRYMEMFGLPNDSIKPGY-SLREIM-------A 409

Query: 465 RTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILR--YIGIANDITE 521
                              F++ + +      I   R +  +   I    ++    DITE
Sbjct: 410 LRKKHGMFDGDIDAYCVKVFKLVSTNGTLTINIPDGRVIHTALQSISGGGWVLTLEDITE 469

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ + I   A  D LT +PNR  F D L  +L            V+ IDID++K++ND
Sbjct: 470 RQRAEDRIAHMARYDALTDLPNRTMFRDHLDKMLKK-----EENLAVLSIDIDEFKQVND 524

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD++LVS+  R+   ++  DI+ARL G+ F II        ++      +  +I
Sbjct: 525 TLGHFVGDELLVSIANRLSGCMERDDIVARLGGDEFAIIRHGVQERSELIPLIERVHAAI 584

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
            +P +     +   ASIG A           +L+NA+LA+Y AK  G      F      
Sbjct: 585 RVPYDCTGHHLNADASIGIAMSPCDGSELEGLLRNADLALYAAKGSGRRTYRFFEPEMKV 644

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  ++ ++  A+ + +  + Y P I +   +I+G EAL++W HP+ G +S ++F+ 
Sbjct: 645 RAQKRHDMEMEIRNALFHQQFEVHYQPFIDVKTRKILGCEALVRWRHPRHGLVSPADFIP 704

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  ++L+       +W D      I + +N++      + L   + + + 
Sbjct: 705 IAEETGLIDQLGSWVLKTACHAAANWPD-----DIRLAVNVSPVQFKGHTLALNVASALG 759

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +    +R++L  +E+V++ + E +  +L  LR +G+ + LDDFGT  S L YL   PF+
Sbjct: 760 SSGLPANRLELEITEAVLIRDDEEALAILHELRGLGVRIALDDFGTGYSSLRYLQLFPFN 819

Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +   T  E    I+++++ +A     T  A+ +     +  L ++GCD +Q 
Sbjct: 820 KIKIDRCFIQNITEPEGASHIVKAVVDIAAARNMTTTAEGVETAEQLAVLRKLGCDQMQG 879

Query: 938 SHVASPLGFNSILKLL 953
              +  L    + +L+
Sbjct: 880 FFFSPALTEEKLSRLV 895


>gi|331697858|ref|YP_004334097.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952547|gb|AEA26244.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia dioxanivorans CB1190]
          Length = 714

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 147/603 (24%), Positives = 261/603 (43%), Gaps = 13/603 (2%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +   ++   +      I+          V A       + S   R       SG  +   
Sbjct: 117 VTAAVVAGYVARMRARILDEQETVRQAEVQARKQTQDALLSSEARFRAIFENSGIGIGIA 176

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+    V      A++LG           N   +++ +D      +    +  +R + + 
Sbjct: 177 DMDGRIVDANEAFASMLGYTVEEF--CRINVADFVYPDDAQGMWELYAEIIEGKREQARV 234

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R R  D +  W  +    + ++ GD L  + +A D T + +  + +   A  D LTG+
Sbjct: 235 EKRYRHRDGRMVWTDLTASLIRDAQGDPLYTVAMAEDATTRHELQDRLRHQALHDPLTGL 294

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR    +RL  +          R  V  +D+D +K +ND LG  +GD +LV+++ R+ +
Sbjct: 295 PNRTMVNERLAELFSR----PGGRIGVCYLDVDNFKIVNDRLGHGIGDKLLVAISARLHQ 350

Query: 602 LLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            +     ++ R+ G+ F  IL+ +    ++A  A  +  S+A P+++ E  + VTASIG 
Sbjct: 351 CVAERGHLVGRMGGDEFV-ILVQDPPPGEVALVADLVLASLASPVDVDEHRLVVTASIGV 409

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENS 718
                   T +E+LK A++ +Y AK  G      +          R  +   L   +E  
Sbjct: 410 VETDVDDTTPAEVLKAADVTLYWAKSDGRARWAQYDPERAALDMTRFTLTATLAAGLERD 469

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  + Y PI+RL D  + G+EAL++WDHP  G +    F+ +AEE   I  +   +L   
Sbjct: 470 EFEVEYQPIVRLDDGAVAGVEALVRWDHPTLGRLGPDRFIEVAEETGAIVPLGRHVLREA 529

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R    W  +     +F+ +N+A +   D  L   +  +++ T   P  ++L  +ES ++
Sbjct: 530 CRRAARWNAENPGADLFVSVNLAVRQAHDPALVSDVADILADTGLPPHLLQLELTESALL 589

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKR 895
           G   R    +G L  +GI + +DDFGT  S L YL  +P  ++K  G L+ G    T   
Sbjct: 590 GPAGRPVDAIGALADLGIRIAVDDFGTGYSNLGYLPRLPLHSLKLAGVLVEGLRSPTAGA 649

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I+ S++ +A  +  T+  + +        L   GCD  Q    A P  +++++  L  
Sbjct: 650 SRIVTSLVALAHALGLTVTGEGVETPAQAARLRTAGCDTAQGWLYARPAPWDAVVAALGR 709

Query: 956 RFP 958
             P
Sbjct: 710 TRP 712


>gi|119946359|ref|YP_944039.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119864963|gb|ABM04440.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 591

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 226/452 (50%), Gaps = 15/452 (3%)

Query: 515 IANDIT----EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           +  D+T    E+ K  E +   AF D LTG+PNR+  +DRL   L  +         VM 
Sbjct: 136 VNQDLTFQSKEKAKLAEELNDLAFYDTLTGLPNRRLLIDRLHHALASNVR-QGCESAVMF 194

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN---- 626
           ID+D +K IND LG  VGD +L+   +R+   L+  D +ARL G+ F +IL + +     
Sbjct: 195 IDLDHFKDINDTLGHEVGDLLLIQTAQRLESCLRKGDTVARLGGDEFMLILENLDENPIE 254

Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            + K    A  +   +  P  L   +   T SIG   +     T+ +++K A++AMY AK
Sbjct: 255 AATKAKAIADKILAELNKPYQLDMHKCHSTVSIGAVFFDHQGNTAEDLIKQADIAMYQAK 314

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             GGN +  F      S      ++ +L +A+E S+ +L Y   +   D  ++G EALI+
Sbjct: 315 QAGGNLIRFFNPKMQESINARITLENELRIAIEKSQFHLYYQIQMD-SDNRVLGAEALIR 373

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W +P+ G +  + F+ IAEE  +I +I  +++E     I  W+ ++    + + +N+++K
Sbjct: 374 WTNPEHGLVLPATFIPIAEETGLILSIGKWVIETACAQIKVWQKKSQTRDLTLAVNVSAK 433

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +  + +Q+ + +     + +KL  +ES++  + E +  ++  L KIG+  +LDDF
Sbjct: 434 QFRQKDFVDQVQSAVQRHAIPGNLLKLELTESLLQYDTEVTIAMMKALNKIGVQFSLDDF 493

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L YL  +P D  K + S +          AI+++II MA+ ++  +IA+ +  E
Sbjct: 494 GTGYSSLQYLKRLPLDQFKIDQSFVRDIATDNNDKAIVKAIIAMAQILDIDVIAEGVETE 553

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              + L   GC   Q    + P+  +    L+
Sbjct: 554 EQQQLLLGKGCTLYQGYLFSKPIPIDQFDALI 585


>gi|229194143|ref|ZP_04321006.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228589326|gb|EEK47282.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 828

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLQLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHS-TGFSNLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIGFLS 823


>gi|28869374|ref|NP_791993.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852615|gb|AAO55688.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 730

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 142/571 (24%), Positives = 262/571 (45%), Gaps = 26/571 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V        + G ++  + G   +   
Sbjct: 154 AQAALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAREVLGRTAHEIG 213

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +        R  +   +  +      E   R        + + +  ++ +N    
Sbjct: 214 IWTDTV-------QREFMIDELRQKGRMHHREMNGRDKKGAPLVLDVSVEFITLNN--TA 264

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI + K +   I   A+ D LTG+PNR   +DRL+  + L     NLR  ++ 
Sbjct: 265 CLLMNARDIGQLKSAQAQIQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLF 323

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--- 627
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + S   
Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQEDTVARLGGDEFVVLICGLDGSLEH 383

Query: 628 --LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++   A  +R  +A P+ L    + VT S+G        +T +++LK A++A+Y AK
Sbjct: 384 VTHQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVLIPDDGLTPADLLKRADIALYRAK 443

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +     +I G EAL++
Sbjct: 444 DSGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRTNQITGAEALLR 503

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L+   +       Q         + +N++
Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSRILDDACKIGGLLLSQGLVSKDRFLMGVNVS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +    ++  E ++  + +     + +KL  +E +V+ N + + L +  LR +G+   +D
Sbjct: 564 PRQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVIQNLDDTILKMRSLRDLGVGFAMD 623

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +    S      I+R+I+ MA+++   +IA+ + 
Sbjct: 624 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAEIIRAIVAMAQSLNLHVIAEGVE 683

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               +  L R+GC   Q    + PL      
Sbjct: 684 TPEQLAFLERVGCYNYQGYLFSEPLPGPEFE 714



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +     R  LA+  +    WD +I   R+  +   + + G+ +       R +   +
Sbjct: 27  ERILEETRARLELALDLAQMGTWDLNITHSRLQASARASFLHGMDAQPFDDDSRLFFDRL 86

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            + +RD  R    + +  R+  LQ  +R +  D     +  R R   +  G+ ++  G  
Sbjct: 87  PVEERDRVRAAYTAALESRQDCLQMTYRFQMKDGTSRLIESRGRIYRDEIGNPVKLAGTL 146

Query: 517 NDITEQK-----KSLEGILCNAFQ---DNLT 539
            DIT+Q      ++ E     AF    D++T
Sbjct: 147 LDITQQCAQAALEASEEKFAKAFHSSPDSIT 177


>gi|291439458|ref|ZP_06578848.1| sensory box/GGDEF family protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291342353|gb|EFE69309.1| sensory box/GGDEF family protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 649

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/569 (23%), Positives = 267/569 (46%), Gaps = 27/569 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A   +   +   D     V+    +AT+LG    ++ G +   L  +  +       
Sbjct: 74  YRAAFAVAPLAMAVVDREGMVVSANGSLATLLGSDPDTLTGAVAADLVDLSSD--ARIWH 131

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +  R+ +L+   R++  +    W+ + + P+   +      +    D++ +++  
Sbjct: 132 AYREVLRGRQAKLRCTRRLKHPEGHAPWVRVTVAPLPADD---EGVLLSVTDLSTRRELQ 188

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLG 584
             +      D +T +PNR  FL+RLT  L+          R  +  +D+D +K IND LG
Sbjct: 189 ARLRHARLHDPVTRLPNRTLFLERLTAALEAESYERSGTGRIGLCHVDLDGFKAINDTLG 248

Query: 585 IAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAM 637
             +GD +L ++  R+    +          ++ARL G+ F +++     + ++AD A ++
Sbjct: 249 HRMGDRLLAAVAERLTRCARESGRSRAGAPLVARLGGDEFALLVEDSTGTEQLADLAESV 308

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +I +P +L  + ++V+ASIG     ++  T + +++ A+  +Y AK  G      F  
Sbjct: 309 LGAIQVPFDLCGQRLSVSASIGVVERHTAGTTPTALMQAADTTLYWAKADGRARWTLFDP 368

Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   R  +   L  A+E  E  L Y P++ + D+ + G+EAL++W+HP++G ++ +
Sbjct: 369 ERNAHRVTRQALASALRPAIERGEFALEYQPLVGMEDDRVHGVEALVRWNHPRFGTLTPN 428

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGM 814
            F+ +AEE   I  +  ++L    R    W+++    PPIF+ +N+A + + D++L   +
Sbjct: 429 RFIGLAEEDGSIVPLGRWVLRTACRQARRWQEEHPEEPPIFVSVNVAVRQIRDSDLVADV 488

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +++ T  +P  ++L  +ES VMG+  R   +L  L  +G+ + +DDFGT  S L+ L 
Sbjct: 489 AGILADTGLAPRLLQLELTESAVMGSSGRPLQVLRELSDMGVRIAIDDFGTGYSNLANLS 548

Query: 875 YIPFDTVKFNGSLMTG----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +P   +K +G+ + G                 I+ +++ +A  +  T+ A+ +      
Sbjct: 549 RLPVSVLKLDGAFVRGFPYEERSAAPPNPADEVIVEAMVQLAHRLGLTVTAECVETSAQA 608

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
             L R+GCD  Q    + P+  + I +LL
Sbjct: 609 TRLRRIGCDTGQGWLYSRPVPPDRISELL 637


>gi|221126755|ref|XP_002164849.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 478

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 227/455 (49%), Gaps = 6/455 (1%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+++ YIGI+ DIT++K   E I   A  D LT +PNR     RL   +  +      + 
Sbjct: 12  GEVVNYIGISIDITDRKAKEERIRFLAQHDVLTELPNRALCQQRLGEAIASA-RHTGEKV 70

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D++K IND LG  +GD +L ++ RR+   ++  D ++RL G+ F IIL    +
Sbjct: 71  AVLFIDLDRFKLINDTLGHHIGDGLLRTVARRLSSAVRSDDTVSRLGGDEFVIILRHVTD 130

Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A     +  +I     +    +TV+ S+G A +        E+++ A+ AMY AK
Sbjct: 131 LPELTAMVNDRLIPTIRQTATVDGHVLTVSCSVGVALYPEDATDQDELMRRADAAMYEAK 190

Query: 686 HRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G +    F   + +    R  ++  L  A+ N E  L Y P +     ++ G EAL++
Sbjct: 191 SAGRDTARFFSPETDQRVLARQSMETQLRQALANEEFSLHYQPRLNARTRKVQGAEALLR 250

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W +P  G +   EF+ +AEE  +IK I  ++L    R+ +S  +Q     + + +N++  
Sbjct: 251 WKNPLLGQVPPGEFIHVAEESGLIKPIGAWVLREACRNWMSMEEQGICKGLELSVNLSVA 310

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L D EL + + A++  T   P++++L  +ES +M NP  ++  +  L+ +G+ + +DDF
Sbjct: 311 QLADPELVDQLSAVLRDTRMPPAQLELELTESHLMDNPVAAQQQVAALKALGVKVAIDDF 370

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL     D +K + S + G        AI+ ++I +   +   ++A+ +   
Sbjct: 371 GTGYSSLAYLKRFDIDKLKVDQSFVLGMLEDSADAAIVHAVIALGHTLGLKVVAEGVENL 430

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              + LT +GCD +Q    + P+     +  L+  
Sbjct: 431 PTAQTLTALGCDELQGYCFSRPIPLAEWVAYLRSH 465


>gi|221064949|ref|ZP_03541054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220709972|gb|EED65340.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 692

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/588 (22%), Positives = 252/588 (42%), Gaps = 16/588 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++  V      +Q I    ER                     +     ++ ++
Sbjct: 116 VLKGVVALMTDVSHHHLATQQIRDSEERMR-KFAAITTEAIVLHRDGVIMDGNDALSRLV 174

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   + G     L Y+    R      L +    R  RL+    V   + Q   + I 
Sbjct: 175 GYSLDELRGTP--VLDYVAPEAR---LRALQNMRSEREDRLESV--VVHKNGQLVPVEIE 227

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              M          I +  D+T   ++ + +      D LT +PNR      L   +  +
Sbjct: 228 ASTMPGEKDR--HRIVLLRDLTANLQTRQRMDYLTQHDLLTHLPNRARLNHLLADAIARA 285

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A  +  R  V+ +D+D++K +ND L    GD +L  L  R+   +   DI+AR   + F 
Sbjct: 286 A-GEQSRLAVLSLDLDQFKSVNDSLSHQAGDLLLCELAHRLRSTVGTQDIVARTGSDDFV 344

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L    + L+       +R +   P  +   ++ ++ S+G A +       + +L NAE
Sbjct: 345 IVLPDNPSLLETEALLARLRATAEAPYLIEGTQLVISVSVGVAMYPKDGKCPASLLSNAE 404

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM  AK RG +  + +  +       M+  ++ L  AVE  E  L Y P   +   E+ 
Sbjct: 405 AAMQMAKSRGRSFSQFYTPALESRATRMLMQEQMLRNAVERGEFELHYQPQTLMQTGELA 464

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G +S  EF+  AE   +I A++ ++L +  R   +W+ Q   P I +
Sbjct: 465 GFEALVRWRHPHRGLVSPDEFIGFAENRGLIAAVDRWVLNQACRQAHAWQQQ-GFPAIPV 523

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++++    ++ + +   ++ T      + +  +E+ +M +  + +  L  L+ +G+
Sbjct: 524 AVNLSAQEFRQRDVVKEVAQALADTGLEACYLHIEVTETTLMLSGNQMQQTLHALKALGV 583

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L+YL   P D +K + S +T         AI+ +I+ M +++   I+
Sbjct: 584 GLAIDDFGTGYSSLAYLRKHPIDRLKIDRSFVTDLPHNPDAAAIVNAIVQMGQSLHLEIL 643

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+ +     +  L  MGC  +Q   V++PL        + +   L++ 
Sbjct: 644 AEGVESTEQLDMLREMGCAMMQGFLVSAPLPAEQASAWMSQHCQLLQR 691


>gi|311232702|gb|ADP85556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris RCH1]
          Length = 1065

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 11/554 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465
              L    + + +   D     +   P   TI G       G   R      H  DR  + 
Sbjct: 500  FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRH--DRGFYE 557

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +  S   + RG  + E   R  + + +   + I  + + +G    Y+ + +DI++ K  
Sbjct: 558  RLWHSL--HERGAWEGEIWNRRINGENYPEWLSISAIRDESGATTNYVALFHDISDLKAK 615

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               I      D LTG+PNR   L+RL   L        L   ++ IDID +K IND LG 
Sbjct: 616  EAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRL-CGLLYIDIDNFKTINDSLGH 674

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              GD  +  +   +  L++  D L+RL G+ + I++ +     ++   A  +    + PI
Sbjct: 675  EAGDKFIAEVAEHLTLLIRPEDTLSRLGGDEYVILVANPGEEREVVLVAERILHHFSQPI 734

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
             LL+RE+ V  SIG A   +      E+L NA+LAMY AK +G N  E F   +      
Sbjct: 735  ALLDRELHVGLSIGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERFSPHLHDRIRS 794

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R+ ++  L  A+ + E+   + P + L    IVG EAL +W  P    IS  EF+ +AE+
Sbjct: 795  RMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRISPGEFIPVAED 854

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
            L +I  +   ML        +  D+   P I + +N++       +L   + A +  T  
Sbjct: 855  LGLIFDLGEHMLRSSLAFTRALMDEGL-PDITMAVNLSLVQCRHADLVGRVLAALRDTGV 913

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             P R++L  +ES +M +  R+   L RL  +GI+L +DDFGT  S L +L ++P  T+K 
Sbjct: 914  PPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGTGYSSLYHLKHMPLHTLKI 973

Query: 884  NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +           I  +++ MA+N++  +IA+ +     +  L   GC  +Q    +
Sbjct: 974  DQSFVRDLPHVAGSRTIALTMLAMARNLDLDVIAEGVETGAQMHFLRDHGCRVVQGFLFS 1033

Query: 942  SPLGFNSILKLLKE 955
              +  + +  LL+ 
Sbjct: 1034 PAVPGDRLFDLLRR 1047


>gi|148657838|ref|YP_001278043.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus sp.
           RS-1]
 gi|148569948|gb|ABQ92093.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseiflexus sp. RS-1]
          Length = 796

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/579 (23%), Positives = 268/579 (46%), Gaps = 10/579 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L        +  D      A+  + D +   D+        P    ++GL    +   
Sbjct: 220 AILRAASRQHRLDVDLRLMMAAISSTSDGIVIADLDGIPHYQNPAFQAMVGLTLDDL--R 277

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L  ++   RD                 + E R+         + + + P+ + +G 
Sbjct: 278 AAGGLQRLY---RDPGVARAALAAVRNGQSYRGEMRLIDHRGNALNVHVNLDPVLDPSGR 334

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +  I +  D+T++K +   +   +  D LTG+ NR   LDRL   LD    + +L   V
Sbjct: 335 AIALIAVHTDVTQRKLTEARLAYLSSHDPLTGLANRTLLLDRLQQALDRRNRERSLPCGV 394

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++I++D++K+IND LG AVGD+VL+++  R+  + +  D +AR  G+ F +++ S  +  
Sbjct: 395 LLINLDRFKQINDSLGHAVGDEVLIAVAGRLKHITRPGDTVARFGGDEFAVVIDSPGSVE 454

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            I   A  ++ ++  P+ + +  +TV  SIG A        +  +L NA+ A++ AK RG
Sbjct: 455 DIWRVAKRVQHTLNHPVTVQDHSLTVGVSIGIAVDDGRAKDAMTLLHNADTALHQAKARG 514

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            + +  F   + +  + ++ ++ +L  AV++  L + Y PI+ L   E+ G EAL++W H
Sbjct: 515 RSRIVMFEEAMHTEAARQLQLEIELRQAVQHQTLEMHYQPIVDLCSGELYGFEALMRWQH 574

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDL 805
           P  G +    F+ IAEE  +I  +  + +  + R    WRD+      + I +NI S+ L
Sbjct: 575 PSHGLLFPDSFLPIAEEAGIIPTLGNWSIAEVCRQARRWRDRFGAAADVPISVNIHSQHL 634

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L   ++ ++ +     + + +  +E   + + +     L  L+ +G+ + LDDFGT
Sbjct: 635 DQADLFAQVEQVLRQQNLPGAALTIEITEKAALNDLDLVLSQLLPLKALGVRVMLDDFGT 694

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS+L  +P D  K + S +           I+R++I +A+ ++  ++A+ +  E  
Sbjct: 695 GYSSLSHLARLPVDGGKIDRSFVQSMMHDPHAATIVRAVITLARELQLNVVAEGVETEEQ 754

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
              L ++ C Y Q          +++ ++L  R  + ++
Sbjct: 755 RAALLQLRCPYAQGWLFGRAADADTMTRVLAARPHMSRS 793


>gi|228922228|ref|ZP_04085535.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837283|gb|EEM82617.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 785

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLDLCTTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 741 AEGVETKEQLTVLQRTACYLIQGYYYSKPVNEDEFIGFLS 780


>gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 709

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 139/583 (23%), Positives = 261/583 (44%), Gaps = 12/583 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKSFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + ++ID +K IN+  G  +GD+VL+ ++RR+   L   D L R+ G
Sbjct: 297 MTQAAIS-RWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +R ++  P ++  + + +TASIG A +      S E++
Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFHIEGQSLVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  A+  G ++   +          R+ ++  L  AV N    +VY P + L +
Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQSFEIVYQPKLDLNN 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGL 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 536 -FQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTTHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
              +S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +IA+ +     +  L    CD IQ   ++ PL    +   L
Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFL 697


>gi|165872396|ref|ZP_02217031.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167639859|ref|ZP_02398128.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|177652058|ref|ZP_02934604.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190568497|ref|ZP_03021404.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813349|ref|YP_002813358.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229602463|ref|YP_002867986.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254721175|ref|ZP_05182966.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254735785|ref|ZP_05193491.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254751085|ref|ZP_05203124.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|164711834|gb|EDR17376.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167512260|gb|EDR87637.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|172082427|gb|EDT67492.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190560501|gb|EDV14479.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003567|gb|ACP13310.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|229266871|gb|ACQ48508.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
          Length = 908

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 897

Query: 951 KLLKE 955
            LLK+
Sbjct: 898 TLLKK 902


>gi|71726098|gb|AAZ39221.1| putative signal transduction protein [Janthinobacterium lividum]
          Length = 668

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/564 (23%), Positives = 248/564 (43%), Gaps = 16/564 (2%)

Query: 399 GIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
                  R  L   +  +GD+V+  D     +  +   AT+ G A   + G +   LP  
Sbjct: 96  SAAHREARHELDNLMEEAGDVVFRLDTDGLILFASKRAATLFG-APSGLSGHL--LLPLA 152

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               R   +  L+  +       + E R++  D Q  W  +R+    N+ G +   + + 
Sbjct: 153 AEASRAALQAALEDALAEPG---RLEVRLQTPD-QEIWFELRLSSYMNAAG-VAELLVVG 207

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D + Q  + E +   A  D LTG+PNR    DR+  ++  +A       +V  I +D +
Sbjct: 208 RDTSAQHNTEERLRHMATHDALTGLPNRLLLSDRIRMVIAQAARSGQG-FSVATIGLDGF 266

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND LG  VGD VL     R+ + L+  D LAR+ G+ F  +L       +I      
Sbjct: 267 KKVNDGLGHPVGDAVLRLAAARLRKTLRDSDTLARVGGDEFVAVLPGSATDAQIKLVTGR 326

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P  +    I V AS+G + +         ++  A+ AM  AK  G      + 
Sbjct: 327 LLATLQAPFEVDGHTIYVGASVGVSIYPLHAEDEVRLVALADAAMSRAKETGKARCLVYS 386

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                     + ++  +  AV   E  L Y PI+     +I G E L++W HP  G +  
Sbjct: 387 PRLNGPSEHDISLEAAMFHAVREGEFLLFYQPIVDAHTRQIQGFETLMRWKHPTLGLVPP 446

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   +I  +  + L+     +  +++ A   P++I +NI+ +   +++  + +
Sbjct: 447 VRFIPIAEANGLINLLGAWALKAACVQLKQFQEVARR-PLYISVNISPRQFRNDKFLDVL 505

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              I+ +  S   + L  +E  +M +P  +  +L ++ +    + +DDFGT  S L+YL 
Sbjct: 506 DDAIAFSGLSGEHLVLEITEGTLMIDPVHAETILVKMTERRARIAIDDFGTGYSSLAYLK 565

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P   +K + + +     + K  AI  +I+ +AK++  +++A+ +  E  +  +   GC
Sbjct: 566 RFPISVLKIDRTFIKDLPESSKDAAICNTILDLAKHLNLSVVAEGVETEEQMHFMESRGC 625

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
            Y+Q      P+  ++ L  L ++
Sbjct: 626 QYVQGYLTGKPMPAHAALSALSDK 649


>gi|119945689|ref|YP_943369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
 gi|119864293|gb|ABM03770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 724

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 248/558 (44%), Gaps = 24/558 (4%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
               W  D+    +  T +   I   +    +  +   + Y   + +      LD  +  
Sbjct: 158 RLGGWKLDLKTGDLFWTDETYRIHETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINN 217

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-- 532
             G    E +      +   +      ++  +G  +R  GI  DI+EQK +   +  +  
Sbjct: 218 GIG-YDLELQTYTTKGRKIDVRTTC-IVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNL 275

Query: 533 ------------AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                       A  D LTG+PNR    DR+   +  S  +D     V  ID+D +K +N
Sbjct: 276 DLANANSALKLSAHYDPLTGLPNRILLADRIQQAVAKSLRNDKY-VAVAFIDLDGFKAVN 334

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD++L  + +R+  +L+  D L+R  G+ F  ++ + ++  +     + M +S
Sbjct: 335 DSHGHTIGDELLKKVAKRLKHVLREGDTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLES 394

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++  + + ++ + ++ASIG   +        ++L++A+ AMY AK +G N    F +   
Sbjct: 395 VSSTLVVEKKLLKISASIGVTFYPLDSAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQD 454

Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + +   +    +  A++N+E  L Y P   L    +VG+EALI+W+HP  G ++ + F+
Sbjct: 455 VAIKHHNEALKRIAQALKNNEFALYYQPKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFL 514

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E   +   I  ++++   +   +W        I I +NI+   L   E    ++ ++
Sbjct: 515 PAVEHDILDIEIGKWVIKTALQQSQNWLSSG--TDIPISVNISPLHLQHAEFVSELKRML 572

Query: 819 SKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +    +   ++    ES  + + E    ++    ++G+  ++DDFGT  S L+YL  +P
Sbjct: 573 DQYPNINAGSLEFEILESSALKDIELVSKVMKECNQLGVRFSIDDFGTGYSSLTYLKRLP 632

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +T+K + S +          AI++ II +AK     +IA+ +      + L  +GC ++
Sbjct: 633 AETLKIDQSFVRDMLIDTDDKAIIQGIIELAKVFNLKVIAEGVETPQHGELLLSLGCYFV 692

Query: 936 QDSHVASPLGFNSILKLL 953
           Q   +A P+  N +L  L
Sbjct: 693 QGYGIAKPMHENDVLTWL 710



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNF 464
           R  L +  +G  +WDW +    +T     A I+G     +      +W   +H +D    
Sbjct: 18  RLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPIQFDSWASNLHPDDLVKA 77

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
           +++L           + E R++     + W++   + +  +  G   R IG   DI E+K
Sbjct: 78  KSLLAQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQGKPKRMIGTHLDINERK 137

Query: 524 KSLE 527
            + E
Sbjct: 138 NNEE 141


>gi|229104309|ref|ZP_04234978.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228679007|gb|EEL33215.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 909

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/725 (22%), Positives = 317/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +  +  +  +       I ++       
Sbjct: 194 PTVFNSKRKIYIFIFVLISSATFNYIYFYLYSHLANDTITLLRLLYRVPILLIAIAGSIS 253

Query: 304 PM---------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                      V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 254 DDYNSNKNYFTVHPKLGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLI- 312

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +I    +  + +        L   +             + S+ +    ++        
Sbjct: 313 RHSIVGMQNATLTKRLQAFNAQLEDKV-----TLRTSDLVHKSEALSEKQQKFESLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    T L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSVLLGAPTNELLGETC--FSIILDEDKHKLLTALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   LQ   +    D   +++ + I P+   +G I     +  DIT QKK  E I   AF
Sbjct: 426 KSASLQLSSQY--KDGFIYFLYVTIVPIM-IDGQISGSYIMVKDITAQKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  + T  N    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDAVTKIGNRAYFHKKLRKVIKNAQT-INSEFALLYLDLDRFKAINDTLGHSSGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     ++R+ G+ F I++ +  +   +      + +S+  P  + E+++ V
Sbjct: 542 VAQRFQSCLPSHTYVSRIGGDEFTILIENYTDHDSLFQLCNELFESMKKPFVIHEQKLNV 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I +S +LKNA +AMY AK +      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDASTLLKNANVAMYDAKEKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + +   ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWH-VLGYSHLKIGVNLSAKEFEQEDFVKSISFTLATTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K       M+ 
Sbjct: 781 TERIAMMDERETLIKLRTLKNLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFMTMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +E ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 841 TCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYSNAFT 900

Query: 951 KLLKE 955
           KLLK 
Sbjct: 901 KLLKN 905


>gi|120603555|ref|YP_967955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris DP4]
 gi|120563784|gb|ABM29528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris DP4]
          Length = 1065

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 148/554 (26%), Positives = 249/554 (44%), Gaps = 11/554 (1%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465
              L    + + +   D     +   P   TI G       G   R      H  DR  + 
Sbjct: 500  FELVFRNALEGILITDASGAILAVNPAFTTITGWNERDAVGRNPRILKSNRH--DRGFYE 557

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +  S   + RG  + E   R  + + +   + I  + + +G    Y+ + +DI++ K  
Sbjct: 558  RLWHSL--HERGAWEGEIWNRRINGENYPEWLSISAIRDESGATTNYVALFHDISDLKAK 615

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               I      D LTG+PNR   L+RL   L        L   ++ IDID +K IND LG 
Sbjct: 616  EAQIRYQGMHDALTGLPNRALLLERLAGELKEGQGTGRL-CGLLYIDIDNFKTINDSLGH 674

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              GD  +  +   +  L++  D L+RL G+ + I++ +     ++   A  +    + PI
Sbjct: 675  EAGDKFIAEVAEHLTLLIRPEDTLSRLGGDEYVILVANPGEEREVVLVAERILHHFSQPI 734

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
             LL+RE+ V  SIG A   +      E+L NA+LAMY AK +G N  E F   +      
Sbjct: 735  ALLDRELHVGLSIGIAIHPADGKGPDELLTNADLAMYRAKAQGKNTYERFSPHLHDRIRS 794

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R+ ++  L  A+ + E+   + P + L    IVG EAL +W  P    IS  EF+ +AE+
Sbjct: 795  RMELEGRLRHALRHGEIVPHFQPRVDLATGRIVGAEALARWTLPDGTRISPGEFIPVAED 854

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
            L +I  +   ML        +  D+   P I + +N++       +L   + A +  T  
Sbjct: 855  LGLIFDLGEHMLRSSLAFTRALMDEGL-PDITMAVNLSLVQCRHADLVGRVLAALRDTGV 913

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             P R++L  +ES +M +  R+   L RL  +GI+L +DDFGT  S L +L ++P  T+K 
Sbjct: 914  PPERLELEITESAIMSDVTRTLRRLDRLAALGITLAVDDFGTGYSSLYHLKHMPLHTLKI 973

Query: 884  NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +           I  +++ MA+N++  +IA+ +     +  L   GC  +Q    +
Sbjct: 974  DQSFVRDLPHVAGSRTIALTMLAMARNLDLDVIAEGVETGAQMHFLRDHGCRVVQGFLFS 1033

Query: 942  SPLGFNSILKLLKE 955
              +  + +  LL+ 
Sbjct: 1034 PAVPGDRLFDLLRR 1047


>gi|158338331|ref|YP_001519508.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158308572|gb|ABW30189.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Acaryochloris marina MBIC11017]
          Length = 898

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 231/440 (52%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++   E I   AF D LTG+PNR  F +RL   L  +  + +    VM +D+DK+K IN
Sbjct: 438 ERQDKDEIIHRQAFHDALTGLPNRVLFAERLDHALTDARRNQD-NLAVMFMDLDKFKTIN 496

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +VGD++L  +  R+   L+  D +AR  G+ F ++L            A  +  +
Sbjct: 497 DTLGHSVGDELLKEVANRLQHCLRGGDTVARWGGDEFTLLLAKIRTIADATRTAQRILDA 556

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
               + +   EI + ASIG A +      +  +L+NA++A+Y  K +G    + +   ++
Sbjct: 557 FKEVVKIDHHEIYINASIGIACFPDDGQEAEVLLQNADVALYQCKEQGRGIFQVYDADMN 616

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S  ++   ++ +L  A+E  E  L Y P I L   EI GLEALI+W HP+ G +S + F+
Sbjct: 617 SEATELFALQNNLRHALERQEFMLFYQPQINLQSGEITGLEALIRWQHPEQGLVSPATFI 676

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++LE   + I+ W+  +   P+ I +N++++   D  L E +  ++
Sbjct: 677 PLAEESDLIVQIGKWVLEVACQQIVEWQRISG-LPLTISVNLSARQFYDPTLVETISQVL 735

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P  ++L  +E++ + N   ++ +L +L+ +GI + +DDFGT  S L+YL  +P 
Sbjct: 736 RQTQLDPKYLELEITETIAIKNIPLAQQVLKQLQGMGIKIAMDDFGTGFSSLNYLTQLPL 795

Query: 879 DTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +   T     +  + +++ + + +  +++A+ +     ++ L  + C+ +Q
Sbjct: 796 DTLKIDQSFIKRLTSDAKELEVINAVLSLGRGLHLSVVAEGVDTPEQLELLKSLKCETVQ 855

Query: 937 DSHVASPLGFNSILKLLKER 956
              ++ PL        L+ +
Sbjct: 856 GFLISPPLPVLEATSKLQAK 875


>gi|121595999|ref|YP_987895.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax sp. JS42]
 gi|120608079|gb|ABM43819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax sp. JS42]
          Length = 737

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 131/586 (22%), Positives = 268/586 (45%), Gaps = 20/586 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++  F +I  +       + +    ER     + + + +  +      +     +  ++
Sbjct: 162 AMVGAFVLINDITHHWEAERAVRQSEERMRKFAIATEEGL-AFHRDGRILDANEALQRMV 220

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   + G             R      L      R     YE  +R  D +   + + 
Sbjct: 221 GYSLAELVGQSIFDFAL--PEYR-----ALAVEYTRRGSEKPYELAMRHKDGRVIPIEVV 273

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGI----LCNAFQDNLTGIPNRQSFLDRLTTI 554
            + M    GD    + +  DIT +K++ E            D LT +PNR+  + +L   
Sbjct: 274 GKTMPQQEGD--YRVVVVRDITARKQAQEQAQVQARFLVLHDTLTQLPNRRHLMMQLAR- 330

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A +   R  V+ ID+D +K +N++LG   GD +L+ + RR+ + +K  D +AR+ G
Sbjct: 331 MASAAQERQTRAAVLFIDLDHFKTVNELLGNQAGDQLLIEMARRLQDGVKATDFVARVGG 390

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F ++L    N    A+ A A+   +     +    ++++ SIG + +     +  E+L
Sbjct: 391 DQFIVLLPDLANRAAAAEVADALLARVRAEFAIGGTPLSLSPSIGISVFPDDGYSPDELL 450

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A+ AM+H K  G      +   +    ++ +  +  L  AV      L Y P +R+ D
Sbjct: 451 RRADAAMHHTKESGRGTRMFYEPGMEGQPTELLQQEHLLREAVFQGAFALHYQPQVRVAD 510

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +VG EAL++W HP  G +   EF+ +AE   +I  I  ++L    R + +W D+   P
Sbjct: 511 GRLVGFEALVRWRHPVRGLVGPDEFIPLAESRGLITPIGRWVLREACRQLKAWHDEGL-P 569

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N+++ +    ++   +  ++     +P  +++  +ES +M   + +R  L  L+
Sbjct: 570 RVPVAVNLSAIEFRQRDVVGEIAQVLQSAGLAPQYLEVEITESALMQQADHTRTTLQALQ 629

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            +G+++T+DDFGT  S L+YL   P D +K + S +T +    + +AI+ +II +A +++
Sbjct: 630 ALGVAVTVDDFGTGYSSLAYLKRYPLDKIKVDRSFVTDTPADSEDVAIVTAIIQLAHSLQ 689

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +A+ +     +  L R+GC+  Q   +A P+      + L+ +
Sbjct: 690 LQPVAEGVETAEQLALLQRLGCELAQGFGIAPPMDAQRAREWLRAQ 735


>gi|229092786|ref|ZP_04223924.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228690584|gb|EEL44365.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 911

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 159/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + K +     + E  +T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFKCMEKSFVIYEHTLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 900

Query: 951 KLLKE 955
            LLK+
Sbjct: 901 TLLKK 905


>gi|229157325|ref|ZP_04285403.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228626052|gb|EEK82801.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 883

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 159/724 (21%), Positives = 315/724 (43%), Gaps = 26/724 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  LA+        +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFIVNPIIGKKALAAFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  +  +      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNTS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKHKLASALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +Q   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASIQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   +N    ++ +D D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKKVIKSAKKTEN-EFALLYLDFDRFKAINDTLGHSAGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + +SI  P  + E  +T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEYALFELCNQLFESIEKPFVIHEYTLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNAVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVNSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+    +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACEQMKRWHS-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNKCQFIQGYYYSKPIHTHAFT 874

Query: 951 KLLK 954
           +LL+
Sbjct: 875 ELLE 878


>gi|224824277|ref|ZP_03697385.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224603696|gb|EEG09871.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 718

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 147/590 (24%), Positives = 256/590 (43%), Gaps = 26/590 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++            +       S  +      V+  D     +         +GL   
Sbjct: 139 IGMMIDNTDRRQAEHAVEEQLNFTSQLIETIPSPVFYKDEAGRYLGCNEAFEHYIGLPRE 198

Query: 444 SMHG------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            + G        R+     H  D+  F            G   YE  V++ D     ++ 
Sbjct: 199 ELIGKSVFDISPRHLAERYHAADQALFDA---------PGTQTYEAEVQSTDGTLKNVVF 249

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                + S G +   +G+  DIT++K+S + I   A  D LT +PNR+ FL+RL   ++ 
Sbjct: 250 YKATFNKSGGQLGGLVGVILDITDRKRSEKTIWHQANYDLLTELPNRRLFLERLQQGIEH 309

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +    +    +M ID+D++K++ND+LG  VGD +L    +RI + ++   ++ARL G+ F
Sbjct: 310 AKGSGSA-LALMFIDLDRFKEVNDMLGHKVGDQLLSQAGQRIADCVRETGLVARLGGDEF 368

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +IL + +    I   A ++ ++++ P  L      V+ASIG   +         +L NA
Sbjct: 369 TVILENLSQPTPIEQVAQSIIETLSKPFQLGPDVAYVSASIGVTLYPKDAQDMDTLLINA 428

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMYHAK  G N    F  S       R+ +  DL  A+   +L + Y PI+ L    I
Sbjct: 429 DQAMYHAKALGKNRFCYFVPSIQAIFAERLQLGHDLRSAMAQGQLDVYYQPIVDLATGHI 488

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-----N 790
           V  EAL++W HP+ G IS ++F+ IAE++ +I  I  ++  R A       +        
Sbjct: 489 VKAEALVRWHHPRRGWISPAQFIPIAEDIGLINGIGDWVFRRAAGMAKRLWESGCSGTPA 548

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ I IN + +        E     + +       I +  +E +++         L +
Sbjct: 549 GAPLQISINKSPRQFFTGHAHETWIDHLQEIGLPAECIAIEITEGLLLDERPDVTSKLQQ 608

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
            R+ G+ ++LDDFGT  S ++YL  +  D +K + S +     T    AI  +II M+  
Sbjct: 609 FRRAGVQVSLDDFGTGYSAMAYLKRLDIDYLKIDQSFVRDMTSTPSDRAITEAIIAMSHK 668

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +   ++A+ +        L+  GCD+ Q    +  L  +   KLL +R+P
Sbjct: 669 LGLRVVAEGVETREQRDLLSAAGCDFGQGYWFSRALPEDEFFKLL-QRWP 717



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 3/109 (2%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               +     +A + G     + G +   +       R   +  +D  +       +Y F
Sbjct: 53  DNRFLYANTHLAELFGYTQAELCGTL-GPMDLTAPEFRHIAKRAIDRRINNEATTSRYSF 111

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                D +   + +       + G     IG+  D T+++++   +   
Sbjct: 112 DGLCKDGRRIQVEVFGIRTEFA-GRPA-IIGMMIDNTDRRQAEHAVEEQ 158


>gi|328553762|gb|AEB24254.1| sensor protein [Bacillus amyloliquefaciens TA208]
          Length = 801

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/776 (21%), Positives = 308/776 (39%), Gaps = 43/776 (5%)

Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL----SSS 264
                RS + +   ++      + +   G L+  VN+      +    S  A      ++
Sbjct: 35  LKTGIRSKLWLIAGSVIMGFGIWSTHFVGMLAVYVNMHMNYEAVPMVSSLGAAISGSFAA 94

Query: 265 LIIFLFMYLHWNRWH-AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
           L I     L  NR     V       +     +  +S    M    +   ++   +    
Sbjct: 95  LYIVSRRILTLNRLITGSVFMGAGISLMHYMGMSAISRVMIMYNPFLFCFSILIAIAASF 154

Query: 324 Y---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP----------A 370
                     +K     +        +F+      M  T  +                  
Sbjct: 155 VSLKVFFGLAVKKPTEHLTFQKIISSVFMGAAVSGMHYTGMMAASFYADTRRPSSDMEIH 214

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG------ERQSLAVLGSGDIVWDWDIV 424
                V I ++I    +    ++ +  Q    D       +R    +  + D ++     
Sbjct: 215 SFHLSVFITLIIFCFQMLLFFSSHFDRQFFRHDERMKDHEQRFQSLIKHNIDPIFILSPS 274

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              + +    A +      S     +NW  +I        +T        ++  L ++  
Sbjct: 275 GKILYSNEAGAEM----IHSFGLDSQNWRRHIS----SPLKTYFKQVKKEQQA-LHFDAD 325

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           ++  D    ++ +   P+   NG    Y+ I  D+T+Q+++ + I   A  D+LT +PNR
Sbjct: 326 LKT-DIGLFYINVTFIPVLVDNGLDSVYV-ICKDMTKQRQAEKEIHRMAHYDSLTDLPNR 383

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +  + RLT +L+   +  +L   V  +D++++K IND LG  VGD +L S   R+  ++ 
Sbjct: 384 RHAVQRLTEVLEKKHSHGHLTV-VFFLDLNRFKVINDALGHNVGDRLLQSAAERLSSIIP 442

Query: 605 FPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               +ARL G+ F IIL    +    I D A  +      P  + E E+  + SIG A  
Sbjct: 443 DNGFIARLGGDEFIIILTDARSEDDDIDDLAKQIIMQFEKPFIVQEHELITSVSIGIAVS 502

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721
                   E++K A++AMY +K R  +  + +        + ++ I+ +L  A+E     
Sbjct: 503 PKDGSDGMELMKKADMAMYASKDRNKSKYKYYSAQIGEKEAKKLRIEMELREAIEKKRFV 562

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P     D+ I G+EAL++         +  +F+  AEE  +I  +  +++    R 
Sbjct: 563 LHYQPQYSSADQLITGVEALLRVAGADGKLQNPGDFIQAAEETGLIIDLGKWIITEACRQ 622

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W ++       + INI++K     EL   +Q  ++     P+ ++   +ES+ M + 
Sbjct: 623 AKEWHEKGYH--FPVAINISAKQFQSEELVPFIQKTLTHYKLPPALLEAEVTESMTMEDR 680

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899
           E S+ +L  L ++GIS+++DDFGT  S LSYL   P   +K + S +       K   I 
Sbjct: 681 EHSKKVLTALTELGISVSIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDLQLHPKSAQIT 740

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +II M   +   ++A+ +   +  K L   GCD++Q  + + PL    I +LL E
Sbjct: 741 GAIIAMGHQLSLLVVAEGVETAMQKKLLDEKGCDFLQGFYFSRPLPPEEIEELLHE 796


>gi|171059444|ref|YP_001791793.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170776889|gb|ACB35028.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 751

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 143/634 (22%), Positives = 256/634 (40%), Gaps = 33/634 (5%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
           +W + L M +T  L   + Q  +    + I ++ G+ + ++          +  +  +  
Sbjct: 91  LWLLPLPMLVTG-LALALWQLWIPTVGLSIGLVTGWLLTRN-QELRSARMALQHERGQAD 148

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +    D V   D         P    + G +     G     L      D       L
Sbjct: 149 ATLQAITDSVITVDTGARVQYLNPSAERLAGHSLAEARGHAVGTLFQWDEPDAQTLEQAL 208

Query: 469 DSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSN--------------------- 506
              +  RR  ++    R++A   +   + I   P+                         
Sbjct: 209 AECLQERRVVQVGLALRLKAPQGE-RQVQIIASPVFERQIESGLSGDRLDRPLRRAPADH 267

Query: 507 --GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
               +   +   +D+TE  ++ + +   A  D LTG+PNR    DRL   +  +      
Sbjct: 268 DRDRVTGAVLALSDVTEALRAADKLQHEATHDALTGLPNRALLSDRLQHAVLGAQA-GQR 326

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+ ID+D++K+IND LG   GD VL  +  R+ +  +  D LAR  G+ F ++L   
Sbjct: 327 SVAVLFIDLDRFKRINDSLGHRHGDAVLKEVASRLQQCCRAHDTLARWGGDEFVVLLEDV 386

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   +A  A  M  S+ +   + + E+    SIG A      +    +L  A+ AMY  
Sbjct: 387 PSRDAVAARAAQMIDSVTLEFAIDQVEVACGCSIGIAMAPQDGVAVDALLAMADTAMYRG 446

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RGG   E +           + ++  L   +E     L Y P + L   ++VGLEAL+
Sbjct: 447 KSRGGKRFEFYASEMPSWTREWLALETRLRHGLETQSFVLHYQPQVNLKTGQLVGLEALL 506

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P         F+ + EE  +I  I  +++    + +  WRDQ   P + + +N+++
Sbjct: 507 RWRQPDGELWLPGRFLPVTEETGLILPIGEWVIREATQQLARWRDQGL-PLVPVSVNVST 565

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +  LD  L + +   +  +      +KL  +ES  M +    R LL  LR +G+ + +DD
Sbjct: 566 RQCLDRRLVQVVAEALLCSGIDAGLLKLEVTESTAMADLGHLRGLLVELRALGVQVAMDD 625

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS+L +   D +K + S +          AI+R+ I +A  +   ++A+ +  
Sbjct: 626 FGTGFSSLSHLKHFQIDQIKIDPSFVRDISRDANGAAIVRATIALAHGLGLPVVAEGVES 685

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           E  +  L+   CD  Q    A     +S+  +L 
Sbjct: 686 EEQMAFLSAHHCDIAQGFLYARAQDSDSVASMLS 719


>gi|196038459|ref|ZP_03105768.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196030867|gb|EDX69465.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 908

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 160/725 (22%), Positives = 315/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YLH +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEKTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +  TV        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEETVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + K +     + E+ +++
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDDDSLFELCNQLFKCMEKSFVIHEQTLSL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897

Query: 951 KLLKE 955
            LLK+
Sbjct: 898 TLLKK 902


>gi|196034048|ref|ZP_03101458.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|195993122|gb|EDX57080.1| sensory box/GGDEF family protein [Bacillus cereus W]
          Length = 908

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKFIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 897

Query: 951 KLLKE 955
            LLK+
Sbjct: 898 TLLKK 902


>gi|229012929|ref|ZP_04170094.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
 gi|228748183|gb|EEL98043.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
          Length = 883

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 159/725 (21%), Positives = 316/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     + ++       I ++       
Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 228 EDDNSHKNYFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  R+ ND +   L          +   V        + S+ +    ++        
Sbjct: 288 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T  +    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + +S+  P  + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG + +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+       + + + ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYANAFT 874

Query: 951 KLLKE 955
           KLL+ 
Sbjct: 875 KLLEN 879


>gi|229123265|ref|ZP_04252469.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228660041|gb|EEL15677.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
          Length = 911

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 900

Query: 951 KLLKE 955
            LLK+
Sbjct: 901 TLLKK 905


>gi|228947411|ref|ZP_04109702.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228812264|gb|EEM58594.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 885

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKKFIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 874

Query: 951 KLLKE 955
            LLK+
Sbjct: 875 TLLKK 879


>gi|49478361|ref|YP_037814.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329917|gb|AAT60563.1| sensory box/GGDEF family [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 911

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCQFIQGYYYSKPIHADSFS 900

Query: 951 KLLKE 955
            LLK+
Sbjct: 901 TLLKK 905


>gi|144898885|emb|CAM75749.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 953

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 143/653 (21%), Positives = 264/653 (40%), Gaps = 17/653 (2%)

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
            +    L       +  +        L     +      G  +A    +D       L  
Sbjct: 306 VMIVGFLVAVGAAAWLWLALGRTIRPLTRIAEIADRIQKGEAVAQIPIIDGRSEAHILSV 365

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDG---ERQSLAV---LGSGDIVWDWDIVRDR 427
            L  +V  +         A       I       +   LA      S + +         
Sbjct: 366 SLNRLVSTLADRNADLAAANTALEDDIRRREALEQELRLAATYYEASAEGIVVTVADGTI 425

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
            +       I G     + G   + L     +D   F   +   +    G  + E   R 
Sbjct: 426 ASVNDAFCRITGYQRHEVLGKTTSLLKSGVQDD--EFYADMWQLLR-DTGHWEGEIWNRR 482

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D +     + I  +   +G+I  Y+   +D++++K + E I+  +  D LTG+P R   
Sbjct: 483 KDGRTFPEYLTINAVR-RDGEITHYVAQFSDLSDRKAAEEKIVQLSTHDTLTGLPKRIVA 541

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           ++RL+ ++  +  D  L   ++ +++D   ++ND LG   GD VLV   +R+ +LL+  D
Sbjct: 542 MERLSGLISEARRDGRL-VALIYVNLDGLNRVNDALGHHGGDRVLVETAQRLRQLLQPAD 600

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            LARL G+ F II        +    A  +  + +    + E++  +TA IG A +    
Sbjct: 601 ALARLGGDEFLIISSRFMVMAEAEALARQILDACSQAFFVDEKDTYLTARIGIAFYPRDG 660

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE-NSELYLVY 724
               E+++N+  A   AK +GGN    F   +      R  +  +L  A+  + +  + Y
Sbjct: 661 EDPLELIRNSHAASVRAKEQGGNIYRIFTRDMDDEAVARHALDAELRQAMNSDDQFKVFY 720

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++      I+G EAL++W +P  G +    F+ +AE   +I  +   +L     D   
Sbjct: 721 QPLVNAQSGRIIGAEALVRWFNPTRGLVPPDRFIPLAESNGLIVPMGRKILATACADGAR 780

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +R        F+ +N+A+    D    E +   +S     P  +++  +E  V+GN    
Sbjct: 781 FRKHIG-SDFFMAVNVAAAQCADPGFLETVSKCLSDAKLPPHCLEVEITERTVVGNNPTI 839

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902
              +  LR+    L++DDFGT  S LSYL   PF T+K + S + G    E+  A++ +I
Sbjct: 840 TAFMTALREAESKLSIDDFGTGYSALSYLRQYPFTTLKIDRSFVMGIGDVEQDDALVLAI 899

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I MA  +   +IA+ +      + L   GC+ +Q   +  P+  +  + L+++
Sbjct: 900 IHMAHALGLEVIAEGVETTEQQEFLRDAGCETLQGYLLGKPMPADEFMALVQK 952


>gi|255523664|ref|ZP_05390631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
 gi|255512719|gb|EET88992.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium carboxidivorans P7]
          Length = 973

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/561 (24%), Positives = 267/561 (47%), Gaps = 18/561 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ + S  ++  +A+ G+   VW++D+  + +        I+G +        +     +
Sbjct: 413 TEKLESLRQKYQIAIQGTNSAVWEFDMEDETIYFLEGFKNIIGKSIEKKENIYKTLRKLL 472

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D       +  ++   +  +  + +++       W++IR + + ++N D+    GI 
Sbjct: 473 SAEDEKKLIKEVSEYIHTEKKEIHIQVQIKDNLGNLKWVLIRGKGIFDNNNDVKLINGIV 532

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT  K+  E I   A+ D+LT +PNR+  ++ L   +  +         +M++D+D +
Sbjct: 533 LDITSIKEQEEYIRYIAYHDSLTNLPNRRKLMEILEDDISKNK-----YGALMLLDLDNF 587

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD VL  ++ ++  +      ++R  G+ F I++  E +   I ++A  
Sbjct: 588 KGINDTLGHLYGDKVLKKVSEKLQYIKDEKMFISRFGGDEFLILIQDEKDIAIIENYANQ 647

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +       + +  +EI ++ S+G   +       S++L NA++AMY  K++G N+   F 
Sbjct: 648 IINVFKNKLVIEGQEIYLSCSMGVTLYPFDSNKVSQLLMNADMAMYKVKNKGKNNYMFFN 707

Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  +  IK +  L  A++  +L L+Y P +     ++VG EAL++       +IS 
Sbjct: 708 EEMTEKLQEKIKVEGILRDAIKKEKLKLLYQPQVCTFTGKVVGFEALLRLKDK---HISP 764

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+ +AEE  +I  I  ++ +     I  W+ +       I IN + K L D    E +
Sbjct: 765 AQFIPVAEETGLIIEIGRWVTKEAVNQINRWKKKGLDIK-PISINFSPKQLNDLNYIEFL 823

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  + +       I++  +ES+ +   E++   + RL+ +GI ++LDDFGT  S L+YL 
Sbjct: 824 ENTLKEVSVEAKYIEIEITESIFLEEKEKNIAFINRLKSLGIKISLDDFGTGYSSLNYLT 883

Query: 875 YIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           ++P D +K + SL   + +    + + ++ S+I +AK++   +IA+ I      K L   
Sbjct: 884 FLPVDKIKLDKSL---NDKFLEFENVKVIDSLIFLAKSLNLEVIAEGIEDVAQYKRLKSA 940

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GC YIQ    + PL      K
Sbjct: 941 GCHYIQGYLFSKPLEVEDAEK 961


>gi|121996867|ref|YP_001001654.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121588272|gb|ABM60852.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 836

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 155/648 (23%), Positives = 276/648 (42%), Gaps = 17/648 (2%)

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                   ++    +   + A     +    + + I      +I   +  G L  + + +
Sbjct: 179 LVVTPDGTVRYANPSAANLFARDSTALIGAVIGLPIGGPDAQEIGLRSPAGELRTVEMRV 238

Query: 383 GFTV----IQHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
                     H+L     ++   I ++  R ++    + + +   D  +  +T  P    
Sbjct: 239 REIRWHEQPAHLLNLRDVTERKHIETELRRAAIVFEEAHEAILVTDAEQRVITANPAFTE 298

Query: 437 ILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           + G     + G     L    H     +F T +D  +  ++G    E   R  D      
Sbjct: 299 MTGYTEQEVLGKDLALLRSGFHDE---SFYTAIDDALA-KQGYWTGEMWNRCRDGTTFAT 354

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           ++ +R + +  G +  Y+ +  DI+  K+    +      D LTG+PNR  F DRL   L
Sbjct: 355 LVTVRAIYDDAGHLTHYLAVLADISRLKEYQSQLERIMHSDPLTGLPNRLVFQDRLHQAL 414

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            ++         V+ +D++  K IN  LG AVGD +L  L  R+   L     +ARL G+
Sbjct: 415 -VANQKQTGFFAVLSLDLNDLKAINYSLGHAVGDAILQQLAERLRNALCEEHTVARLGGD 473

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            FG++L+   ++ ++A     + K +  P  + +R I + ASIG A +      ++++ +
Sbjct: 474 EFGVLLLGVRDASEVAAITEDLSKGLDEPFQIADRAIPIAASIGIAVYPEQDAGAADLFQ 533

Query: 676 NAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A  AM+ AK  G      S  ++    +RV +  +L  A+    L L Y P I L    
Sbjct: 534 QANAAMHQAKREGVSYRFFSEDLTEQARERVQLGSELREALNQGALELHYQPQIDLSSGA 593

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            VGLEALI+W HP  G IS   F+ +AE + ++  +  ++LE+  R    W D       
Sbjct: 594 WVGLEALIRWHHPVQGWISPERFIPVAERIGLVTTLGAWVLEQACRQGRIWLDAGFEFG- 652

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N A+ +L   +L E + A + +       +++  +E +++         L  LR  
Sbjct: 653 RLGVNFAAPELSAPDLAERVLAALDRARLPARYLEIEVTERLLVDPDPEVIQQLQLLRNH 712

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G+++ LDDFGT  S LSYL  +P D +K + S + G  +     AI ++I  + +N+  T
Sbjct: 713 GVTVALDDFGTGYSALSYLRDLPVDRLKIDRSFVDGLPDDERTLAIAQAIAGLGRNLGFT 772

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           IIA+ +      + L  +GC + Q      P     I   L   FP  
Sbjct: 773 IIAEGVETPAQREALIGIGCPWAQGFLFGRPAPVAGIEA-LAPHFPRT 819



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 36/149 (24%), Gaps = 23/149 (15%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +         Q +    E+         + V             P  A +    S +
Sbjct: 145 RRRRAEQDQKRIHQALLEREEQLHRLFENMTEGVLVVTPDGTVRYANPSAANLFARDSTA 204

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G +                           G    E  +R+   +   + +R+R +  
Sbjct: 205 LIGAVIGL---------------------PIGGPDAQEIGLRSPAGELRTVEMRVREIRW 243

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533
                   +    D+TE+K     +   A
Sbjct: 244 HE-QPAHLLN-LRDVTERKHIETELRRAA 270


>gi|170749100|ref|YP_001755360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655622|gb|ACB24677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 960

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 131/577 (22%), Positives = 253/577 (43%), Gaps = 29/577 (5%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-------MHGPI 449
            + +     R   A+      +  +D     +      + I GL  G+       +    
Sbjct: 398 ERRLTQTNLRLDAALDTMSQGLCLYDGQSRLMVVNRRYSEIYGLPPGAVVPGMTALEVLS 457

Query: 450 RNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            +     H   D +              G  Q  F+   ++ +   +  R      ++G 
Sbjct: 458 ASLAAGNHPGCDLEALLRQQRDAFSN--GAWQTHFQEL-SNGRIVAIDRR----EAADG- 509

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++    D+TE++++   I   A  D LTG+PNR +   ++   +  +  D      V
Sbjct: 510 --GFVATYEDVTERRRAEARIAFMAHHDMLTGLPNRVAVGQQIDVAVAQAGRDQG--FAV 565

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             ID+D ++ +N+ LG  +GD++LV++  R+   ++  D +ARL  + F ++    +   
Sbjct: 566 FAIDLDDFRPVNETLGHGIGDELLVAVANRLTACVREIDCVARLGADEFIVVQRGVDRPE 625

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A  A  + + +  P +L    I+V  +IG     S    + ++LKNAE+A+   K   
Sbjct: 626 DAAILARRIIEVVGAPYSLTHHTISVGLTIGITLAPSDGSNADKLLKNAEVALDRGKTEA 685

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 F  +          ++ DL  A+      + Y PI  L  + I G EAL++W+H
Sbjct: 686 RGAFRFFEPAMDARLIARRIMERDLRDALAREAFEVYYQPIYSLETDRICGFEALLRWNH 745

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +S +EF+ IAEEL +I  +  ++L R   +   W D+     + + +N+++    
Sbjct: 746 PVRGFVSPAEFIPIAEELGLIVPLGEWVLRRACEEAARWPDE-----LKVAVNVSAVQFT 800

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              L   ++  + +T     R++L  +E+V++ NP  +  +L  LR +G+ + +DDFGT 
Sbjct: 801 SASLVTAVREALRRTGLPGRRLELEITETVLVANPGATTAILHSLRALGVRVAMDDFGTG 860

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PFD +K + S +     K     I+R++I +  ++  T  A+ +  E  +
Sbjct: 861 YSSLSYLRSFPFDKIKIDQSFVRDLCVKDGTDFIVRAVIGLGASLGMTTTAEGVETEAQL 920

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             L   GCD +Q    + P+  + +  +++     ++
Sbjct: 921 AHLRAEGCDEVQGYLFSRPVPVSEVASVIRRWNGALR 957



 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 18/171 (10%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            +LD+ I      G   L+  +         L     SQ   ++    + A+  S + V 
Sbjct: 246 GQLDDRIPTGGRDGLSRLLDAVAAMRSTIRALTLREVSQRRVAEA-LVTDALQTSREGVV 304

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYRRG 477
             D                      +   I   L    I D  RD  R +LD        
Sbjct: 305 VVDADGRIALANAQALRFF----VGLDAAIEAGLSLTRIADQPRDKHREVLDDC------ 354

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                FR  A D        R   +S S      +I + +DI+  K+    
Sbjct: 355 -----FRALARDGDIRLADGRWLRVSRSATRQGGFIAVCSDISVLKEQERR 400


>gi|320322881|gb|EFW78972.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 705

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++RR+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L D
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|163850380|ref|YP_001638423.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661985|gb|ABY29352.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 714

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 149/692 (21%), Positives = 285/692 (41%), Gaps = 33/692 (4%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
              +          +A     +    +      R+T+          ++Y  ++   R++
Sbjct: 28  GRHLLRTGSGLCLTVAGFAATALMASLSAEPTLRLTVVGGATILALVLVYLILRRLARSL 87

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------TVIQHVLA 392
                            +A+         +  L  G  L+             ++  + A
Sbjct: 88  TRAMQAAEGIALATAPAVALRTPPACASGEAPLPDGRRLLADRPRLGDGADPAILTDIAA 147

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449
                  +     R + A+         +D     +        I  L  G++      +
Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505
                 +   D+ +     D  +      +  +    +++  AD +   +   I+P++  
Sbjct: 208 EVLRSNVGTGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                 ++ I  + TE+  +   I   A  D +T +PNR    +R+   +  +  +    
Sbjct: 264 -----GFVAIYEEATERWNAETRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K++ND LG AVGD++L ++  R+   L+  D +ARL G+ F II  S  
Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A  A  +   ++ P  L    + V  SIG A      +    +++ A++A+Y AK
Sbjct: 377 TPADAATLAQRILDVVSAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G      F  ++ +    R  ++ DL  A E     L Y PI  L +E I G EAL++
Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +S +EF+ +AEE+ +I  +  ++L R  R+  +W D      + + +N+++ 
Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASNWPD-----GLKVAVNVSAA 551

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +QA ++++  S  R++L  +ESV++ N   +  +L  LR +G  + +DDF
Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   PFD +K + S     T  +    I+R+++ +A ++  T  A+ +   
Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  L   GCD +Q    + P+  + +  LL
Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALL 703


>gi|317049538|ref|YP_004117186.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316951155|gb|ADU70630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 949

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/529 (26%), Positives = 252/529 (47%), Gaps = 14/529 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I R+ +        + G+    +    +     +     D F ++ D  +  R   +   
Sbjct: 424 ITREILMVNDKAEQLFGI--NKLLIMHKRPHECMSAELSDYFNSLADIAL--RSEGIHTR 479

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            ++         +  R   ++  +      + I  D+T+Q+++   I   A  DNLT +P
Sbjct: 480 EQLLLTAGGERILHTRATTIAGKDLRQNFVMLIVEDVTDQREADARIHHMAHHDNLTSLP 539

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F  +L+  L  + T        + +D+D +K +ND LG  +GDD+L ++ +R+  +
Sbjct: 540 NRILFRQKLSEAL-RADTQGGYITATLCLDLDNFKNVNDALGHQIGDDLLRTVAKRLRNV 598

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D LAR+ G+ F I+L +  N+ + A  A  + ++I  P+NL    ++V  S+G A 
Sbjct: 599 LRDHDTLARIGGDEFAIVLPNIRNADEAAVVAQRLIEAIRPPVNLEGHNLSVGLSVGIAL 658

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720
            + +  T   ML+ A++A+Y AK  G N  E F +        R +I+ DL  A+   +L
Sbjct: 659 SSQAANTPEHMLRCADMALYEAKRNGRNRYEHFTLEMDDLARSRRVIENDLRDAISGRQL 718

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI    ++ I+G EAL++W HP  G I  ++F+ IAEE  +I  +  + L    R
Sbjct: 719 KLYYQPITDGNEKGIIGYEALMRWHHPIKGLIMPNDFIPIAEETGLIHLLGAYALYEACR 778

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           +  SW  +       + +N++     ++ L   ++  + ++  +P R+++  +ESV++ +
Sbjct: 779 EAASWEGEQ-----SVSVNLSPLQFKNSSLISVVEGALRESGLAPHRLEVEITESVLLDD 833

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
              +   L  L+ +G+ + LDDFGT  S LSYL   PFD +K + S +    + R   AI
Sbjct: 834 ALGNIRTLQNLKALGVQIALDDFGTGYSSLSYLRSFPFDKIKIDKSFINDMGDSREALAI 893

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +R+I  M+++++  I A+ +        L   GC   Q      P    
Sbjct: 894 IRAITGMSRSLDIQITAEGVESSEQFARLREEGCTLFQGYLFGRPQPSE 942



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 4/152 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGD-IVWDWDIVRDRVTTTPDIAT 436
             LIG+  I               + E+   L V G  D  ++  D+    V        
Sbjct: 236 GKLIGYAKITRDCTEQQALLRAQREQEKTFRLLVTGVRDYAIYMLDVQGRVVNWNAGAQR 295

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G  S  + G   +        +R +     +  +  + GR + E      D    W  
Sbjct: 296 AKGYRSEEIVGQHFSVFYG--AQERQSKAPDANLGIALKTGRFEDEGWRYRKDGSAFWAH 353

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           + I  + N  G ++ +  I  D+TE+++  + 
Sbjct: 354 VVIDAIHNEEGRLIGFAKITRDVTERREHEQQ 385



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 3/127 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V G  D  ++  D+  +            G  +  + G   ++  +    DR N  
Sbjct: 137 FRLLVEGVTDYAIYMLDLDGNVENWNAGAQRAKGYVAEEIVGQ--HFSRFYSAQDRLNHI 194

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +  + ++ GR + E      D    W  + I  + +  G ++ Y  I  D TEQ+  
Sbjct: 195 PEKNLGIAFKTGRFEDEGWRYRKDGSAFWAHVIIDAIRDDTGKLIGYAKITRDCTEQQAL 254

Query: 526 LEGILCN 532
           L      
Sbjct: 255 LRAQREQ 261



 Score = 42.6 bits (99), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 3/115 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V    D  ++         +         G  +  + G   N+  +   +DR N  
Sbjct: 9   YRLLVQSVLDYAIYMLKPDGTVASWNAGAQRAKGYTAEEIVGK--NFALFYSEDDRKNGA 66

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +         GR + E      D       + I  + +  G++L +  I  D T
Sbjct: 67  PLRGLANATATGRFETEGWRYRKDGSAFSAHVIIDAIRDQYGELLGFAKITRDCT 121


>gi|254559634|ref|YP_003066729.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254266912|emb|CAX22711.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS sensor; putative membrane-associated protein
           precursor [Methylobacterium extorquens DM4]
          Length = 714

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 152/693 (21%), Positives = 291/693 (41%), Gaps = 32/693 (4%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           R   + G      +A  A +  ++      T  +  +  A+I+      +I   +     
Sbjct: 29  RHLLRTGSGLGLTVAGFAAIALIASLSAEPTLRLTVVGGAAILALVLVCLILRRLARSLT 88

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF----TVIQHVLA 392
             +   A  +       + +       +    P+    L+     +G      ++  + A
Sbjct: 89  RAMQA-AESIAPATAPAVALRTLPACASGEAPPSNGLRLIADRPRLGDGADPAILTDIAA 147

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449
                  +     R + A+         +D     +        I  L  G++      +
Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505
                 +   D+ +     D  +      +  +    +++  AD +   +   I+P++  
Sbjct: 208 EVLRSNVGTGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                 ++ I  + TE+  +   I   A  D +T +PNR    +R+   +  +  +    
Sbjct: 264 -----GFVAIYEEATERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K++ND LG AVGD++L ++  R+   L+  D +ARL G+ F II  S  
Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A  A  +   ++ P  L    + V  SIG A      +    +++ A++A+Y AK
Sbjct: 377 TPADAATLAQRILDVVSAPYALAHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G      F  ++ +    R  ++ DL  A E     L Y PI  L +E I G EAL++
Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +S +EF+ +AEE+ +I  +  ++L R  R+   W D      + + +N+++ 
Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASGWPD-----GLKVAVNVSAA 551

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +QA ++++  S  R++L  +ESV++ N   +  +L  LR +G  + +DDF
Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   PFD +K + S     T  +    I+R+++ +A ++  T  A+ +   
Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +  L   GCD +Q    + P+  + +  LL+
Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALLE 704


>gi|237746600|ref|ZP_04577080.1| signal transduction protein [Oxalobacter formigenes HOxBLS]
 gi|229377951|gb|EEO28042.1| signal transduction protein [Oxalobacter formigenes HOxBLS]
          Length = 733

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 133/580 (22%), Positives = 257/580 (44%), Gaps = 21/580 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q        ++   +D       +      V      +  +     I  +LG   G    
Sbjct: 157 QDQKENSPPARTSLNDTATYKAILDTVPVGVMQVSPDKRILYANRSICEMLGYTPGFF-- 214

Query: 448 PIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +   +H     R            +       E  ++  +  +      I    +S
Sbjct: 215 -PERFNDLLHPTVQSRPEVANSWQDLW-HNTSHFFIELALKGKNGIYILTENDISLKLDS 272

Query: 506 NGDILRYIGIANDITEQKKSLEGIL---CNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                  +     I  QK   E        +  D LT +PNR      +   +  +    
Sbjct: 273 GNKPAYAL-----IVTQKSGKEITSFGPHLSLFDPLTSLPNRNYSDTLINNAMRRADRSG 327

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++++D++++K +N+ LG   GD++L  +  R+   L+  D + R+  + F I+L 
Sbjct: 328 K-NVAILLLDVNRFKMVNESLGHEFGDELLKLIANRLKTTLRKADSVIRMGNDEFVIVLE 386

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +   +  +      +  +++ PI+L   +IT++ SIG + +         +LK A++A  
Sbjct: 387 NVRKNEDVNLVVRNIFNALSQPIHLGHHDITISVSIGCSLYPQDSSDIDTLLKYADIAKT 446

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N +  F  +   +    +  + +L  A+E +E  + Y P + L   +I GLEA
Sbjct: 447 DAKRSGSNMLRFFNRNMNITVLDQLLAESNLLRAMEKNEFLMYYQPRLCLKTGQIAGLEA 506

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+WDHPK G + +SEF+++AE++ +I  I  F L+ + R +I+W+ Q    PI + IN+
Sbjct: 507 LIRWDHPKKGILPASEFIVLAEKIGLIHRIGEFALDNVTRQLIAWQKQ--DRPIPVAINV 564

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +S +L   +L + +  ++ +T  +    +L  +ES ++ + +R R  L  +R +GI++++
Sbjct: 565 SSSELYGAKLKKALSGILRETGLASRLFELEITESKLIEDLDRVRHTLKEIRDMGIAISI 624

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +   T+     +I+ + I +A ++   +IA+ +
Sbjct: 625 DDFGTGYSSLSYLSALPVDYLKIDSSFIADVTQNHNVASIVETTIRLAHSLNMQVIAEGV 684

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
                ++ L    CD IQ    + PL    + K ++   P
Sbjct: 685 ETPEQLQFLVAHECDQIQGYLCSRPLPAPELEKFMERFRP 724


>gi|42782831|ref|NP_980078.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42738758|gb|AAS42686.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 910

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 318/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDHNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTASSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L +    +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQVFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTNELLGETC--FSIILDEDKHKLACALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G IL    +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYFLYVTIVPIM-VDGQILGSYIMVKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F +++ +  +   + +    + + +     + E  +++
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTVLIENYTDEDSLFELCNQLFECMEKSFVIHEHTLSL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    +++    R+ +++DL 
Sbjct: 602 SLSIGIAIYPYSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIANKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVDSESNDIIGAEALIRWNHPELGIISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++  + +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACQQMKRWH-TLGYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  ++ L +  C +IQ  + + P+  +S  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVRFLQKNNCQFIQGYYYSKPIHADSFS 900

Query: 951 KLLKE 955
            LLK+
Sbjct: 901 TLLKK 905


>gi|124268236|ref|YP_001022240.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylibium petroleiphilum PM1]
 gi|124261011|gb|ABM96005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylibium petroleiphilum PM1]
          Length = 778

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 142/577 (24%), Positives = 270/577 (46%), Gaps = 17/577 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F  +  +       + +    ER +  +  S + +  +      +     I  + G    
Sbjct: 215 FVRVTDITKHRLAERAVRESEERLAKFMQASAEGIL-FHRNGTVIDINEPICELTGYTRD 273

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G  R    ++  +     +  L +          +E        +   + +  R + 
Sbjct: 274 EVIG--RQTAEFLAPDHLPRAQQALAT-----GAEAAWESVALGRAGERIPVELITRSIM 326

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             NG+ LR + I  DI E+  +   I   A  D LTG+PNR +F  +L   L  S    +
Sbjct: 327 -RNGERLRLV-IVRDIRERVAAQARIHHLAHHDALTGLPNRAAFGLQLER-LTASHRSGD 383

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID+D +K+IND LG  VGD +L ++T RI + L+  D++AR  G+ F +++  
Sbjct: 384 AQIALLFIDLDHFKRINDSLGHLVGDLLLQTVTARITDNLRADDLVARFGGDEFMVLIPG 443

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   +   A  +   I  P+    R I+V+ SIG + +     T +E++++A+ AMY 
Sbjct: 444 VTDRSVVEQVAGKLLAVIEAPLEAAGRSISVSPSIGVSLFPEHGRTPAELIQHADAAMYM 503

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK RG  +V+ F    +S   D ++++  L  A+E     L Y P +R  D  +VG+EAL
Sbjct: 504 AKARGRANVQFFDPVVASAAYDALVVESQLAQALETGAFELHYQPQLRSGDGRLVGVEAL 563

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G +   +F+ +AEE  ++  I  ++L    R    W  Q     + I +N++
Sbjct: 564 IRWHHPERGLLLPDDFIPVAEERRLMLPIGQWVLREAMRCARRWHAQGLE--LPISVNLS 621

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S         + +  L+ +   + + ++L  +E ++M + +  +  L +L+ +G+ +++D
Sbjct: 622 SMQFQQRGFVDSLAELLRQEQVNGAWLELELTERMLMDDLDEVKATLAQLKALGMRISVD 681

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L +L  +P D VK + S +          AI+++I+ + +++  T+IA+ + 
Sbjct: 682 DFGTGYSSLGHLKELPIDKVKIDRSFVQDVPQNADAAAIVQAIVQLGRSLGMTVIAEGVE 741

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E   + L  +GC+ +Q   +A PL    +      R
Sbjct: 742 TEAQERFLRELGCEELQGLRIAPPLSEADLQLWASRR 778



 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 4/150 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGL 440
           +    +  V A       +     +  +       ++  ++             A+ LG 
Sbjct: 86  LCLCALHDVSARKRTELALREQTTQLRVLADNVPALIAYYEQQGFRCTFANRHYASALGW 145

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              ++ G        +        R  ++  V  R  ++ YE  +  A  +  W+ + + 
Sbjct: 146 TPENILGRTAA--EIVGERGWQQIRPYIERVVETR-AQVSYERELTDAAGRPQWLEVDVL 202

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           P  +  G++        DIT+ + +   + 
Sbjct: 203 PNFDDEGELSGAFVRVTDITKHRLAERAVR 232



 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               +     +A   G    +       WL  +    R      LD        R + E 
Sbjct: 6   DARLLAVNEPLAACTGWHRDA-AADGEAWLDRLSAPSRRELLKALDHL--DTADRFRLEL 62

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           + R    +  W+    R   ++       +   +D++ +K++   +     Q
Sbjct: 63  QFRRPGGEVGWLECDARWNRDTE----LCLCALHDVSARKRTELALREQTTQ 110


>gi|30263750|ref|NP_846127.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47529169|ref|YP_020518.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186595|ref|YP_029847.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|30258394|gb|AAP27613.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47504317|gb|AAT32993.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180522|gb|AAT55898.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
          Length = 911

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 722 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 900

Query: 951 KLLKE 955
            LLK+
Sbjct: 901 TLLKK 905


>gi|313681523|ref|YP_004059261.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154383|gb|ADR33061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 700

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 144/576 (25%), Positives = 249/576 (43%), Gaps = 16/576 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           L     S  + S  +     +    +++W   +           + TI G    +     
Sbjct: 131 LQAAELSFLLNSKHQEIEDILSSIDEVIWYIHNQTLSLQYVNKAVETIFGFTKETFLSDT 190

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             W   IH  DR   +   ++    +   ++  FR+   D +  W+  RI         +
Sbjct: 191 TLWQQQIHPEDRSLVQMFFETLAPGQSQEIR--FRILHCDGEVRWLNSRIHNHP----KL 244

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             +IGI +DIT  K   E I   A+ D LT +PNR     +L    + +    N    +M
Sbjct: 245 NLFIGITSDITCSKAQSEEIAFLAYHDPLTHLPNRAKLKLQLENRFEHA---PNSPFALM 301

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K IND +G  +GD +L+ ++RRI E +   D  AR  G+ F I+L    +S  
Sbjct: 302 FLDLDNFKNINDTMGHKIGDKILIEVSRRIRETVGKYDFYARFGGDEFVILLQD-ADSAS 360

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I   A  + +    P  L E E  ++ASIG   +    +   +++K+A+ AMY AK +G 
Sbjct: 361 IDLTAQKLIQVFKEPCTLNETEFFLSASIGIVLYPDDALNGDDLIKHADTAMYEAKKKGK 420

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +  S  R     + I+  +   +  +   L + P+I      + G EAL++  HP
Sbjct: 421 NQFAYYHTSMERAIHHFMYIESLIREGLTQNLFELYFQPLIDSKTLRMEGYEALLRLKHP 480

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I     + +AE    I  I   +L +    I + R      P F+ IN+++K L  
Sbjct: 481 HKGFIPPDTIIPVAEANGDIHLIGDKVLSQACDFIDALRALQ-DEPFFVAINVSAKQLQR 539

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N+  + +   ++      S +K+  +ES VM N       L +L+  GI ++LDDFGT  
Sbjct: 540 NKFVQELFDYLALRSIPSSYLKVEVTESTVMENIAVVSQQLSQLKAGGIRISLDDFGTGY 599

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S  +YL  +P DT+K + S +           I+ +I  +A  +   + A+ +       
Sbjct: 600 SSFAYLAQLPIDTLKIDKSFILALFKDNSNRHIVEAISNLAHALGMNVTAEGVEEAQHYD 659

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            L     D +Q  H+  PL  + IL  +++  P+++
Sbjct: 660 FLLENNIDTLQGYHLCRPLPKDEILNNMQKILPVLR 695



 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 37/121 (30%), Gaps = 7/121 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    D +   D     +      + ++G  S  + G     L      D   F   + 
Sbjct: 10  VLNYLPDGIIMLDERGVILFANDAFSEMVGYKSDLLLGLNMLSLL----ADITVFTECIA 65

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +   +  L  E      D      +  +R + +++    R+     ++T+  +  + +
Sbjct: 66  KVMKEGQ-SLDAETDFLHRDGHIVQAVKSVRMIRHNDH--TRFFVNVRNLTDLIQFNKEL 122

Query: 530 L 530
            
Sbjct: 123 R 123


>gi|229031170|ref|ZP_04187180.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228730209|gb|EEL81179.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 797

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 160/774 (20%), Positives = 308/774 (39%), Gaps = 54/774 (6%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    S+  
Sbjct: 53  ILFLSIGDVFLSFIFPIIDLLLLLLGVSLIFRLAIFNAKSK----LFIFILVLTGLSITD 108

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +  H  +  +       +  +  ++   P  T+S     + +        +I
Sbjct: 109 YLYFYLQDDLSHRSLILLRCLYRVFLLFI-SIAATIPRSTSSRRDYFIINPTFGKKLLVI 167

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +                       I +   + ++  +  +        V ++I      +
Sbjct: 168 F-----------------PYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHTIVRM 210

Query: 388 Q---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           Q                             S  +  + ER         D +   D+   
Sbjct: 211 QNKDLTETLKVFNNQLEQKVSKRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDLNGT 270

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      + +LG  S ++ G            D+      L   +G R      + RV+
Sbjct: 271 VLNINQSGSMLLGKDSAALIGKEC--FSIFLDEDKPELEVALK--MGKRCSSSSLQLRVK 326

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +               G       +  DIT  K+  + I   AF D +TGI NR  
Sbjct: 327 NNNEKDIHFWYVTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIF 386

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L   ++      + +  ++ ID++++K IND LG A+GD VL  +  R    L   
Sbjct: 387 FQQELDRSIERVQKTQD-KFGLLYIDLNRFKNINDTLGHAIGDKVLKEVANRFRTCLPPT 445

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             +AR+ G+ F II+ ++    ++ D    + +    P  + +    ++ SIG A +   
Sbjct: 446 IHIARIGGDEFAIIVHNKT-EQQLLDLCGILFRITEEPFVINQHSFYLSLSIGIALYPFG 504

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724
              ++ +L++A++AMY AK  G N V  +    S   + R+ +++DL  A+EN+EL+L+Y
Sbjct: 505 GTNATTLLQHADIAMYSAKEEGSNAVCIYDETLSQKITRRLQLEQDLPNAIENNELFLLY 564

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P +     +++G EALI+W HP+ G IS  EF+ IAEE+  I +I  + L++    +  
Sbjct: 565 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEEISQIISIGKWTLQQACSQLKE 624

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + IN+++ +    +  + + + I +       I L  +E + M + + +
Sbjct: 625 WHSA-GYTNLKMGINLSAIEFEQKDFVQTIISTIEEIRVPAHLIDLELTERIAMVDEKET 683

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
            L L  L+  G+ L++DDFGT  S L+YL   P DT+K     +     +     I+++I
Sbjct: 684 LLKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 743

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A  +   +IA+ +  +  +  L +  C  IQ  + + P+  +  LK L   
Sbjct: 744 ISLAHTLNMKVIAEGVETKKQLTVLQQNACYLIQGYYYSKPVNEDEFLKFLSRE 797


>gi|254683545|ref|ZP_05147405.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
          Length = 891

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 174 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 233

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 234 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 293

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 294 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 347

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 348 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 405

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 406 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 462

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 463 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 521

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 522 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 581

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 582 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 641

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 642 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 701

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 702 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 760

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 761 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 820

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 821 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 880

Query: 951 KLLKE 955
            LLK+
Sbjct: 881 TLLKK 885


>gi|229097965|ref|ZP_04228915.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|228685402|gb|EEL39330.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 815

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 162/759 (21%), Positives = 311/759 (40%), Gaps = 30/759 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 68  ILFLSIGDVFLSFIFPILDLLLLLLGVTLIFRPAIFNTKSK----LFIFILVLTGLAITD 123

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V  +       +  +   +           Y ++  +  +  L   
Sbjct: 124 YLYFYLQDDLSDRSVILLRCLYRVFLLFIAIAATIPKNASSKRNYFIINPTFGKKILVIF 183

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 184 PYLAVTVLIGFTLKEQTSSSTLIMGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 237

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q  +     S  +  + ER         D +   D     +      + +L
Sbjct: 238 NNQLEQTVSQRTMDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQAGSMLL 297

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+    + +          LQ   +     +   W  + 
Sbjct: 298 GKDSAVLIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 354

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +  +
Sbjct: 355 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELEKSIKRA 413

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               +    ++ ID++++K IND LG ++GD VL  +  R    L     LAR+ G+ F 
Sbjct: 414 QKTQD-ELGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIGGDEFA 472

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 473 IIIHNQT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 531

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 532 IAMYSAKEKGNNAVCMYDETLSRKITRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 591

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 592 GSEALLRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GYSNLKM 650

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     S I L  +E + M + + +   L  L+  G+
Sbjct: 651 GINLSAIEFEQKDFVQIIISTIEEIGVPASSIDLELTERIAMVDEKETLSKLKALKSYGV 710

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++I+ +A  +   +I
Sbjct: 711 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIETSTDGDEIIQTIVSLAHTLNMKVI 770

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  +  +  L +  C  IQ  + + P+  +  L  L
Sbjct: 771 AEGVETKGQLTVLQQNACYLIQGYYYSKPVNEDEFLMFL 809


>gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 705

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/585 (23%), Positives = 262/585 (44%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +DID +K IN+  G  +GD+VL+ ++RR+   L   D L R+ G
Sbjct: 297 MTQAAIS-RWKLAALTVDIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +R ++  P  +  + + +TASIG A +      S E++
Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  A+  G ++   +          R+ ++  L  AV N    +VY P + L +
Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 DRICGLEALLRWPRPGHTGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLGL 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 536 -FQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
              +S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL  + +   L+ 
Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLDELETFLRS 699


>gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 712

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 134/567 (23%), Positives = 265/567 (46%), Gaps = 12/567 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHG-PIRNWLP 454
           ++ +    +R    +  + + +  +++   R V        + G +  ++ G        
Sbjct: 139 TESLRLSEQRFRALIEQAPEAIMVYNMDTGRFVDANRQAEKLTGRSLQTLVGISPAALYA 198

Query: 455 YIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
               +      +  + S    +     +E  V+  D       +R+  + +  G++LR  
Sbjct: 199 PEQPDGLPVAESVSMHSEQAQKGDIPPFERIVQRPDGSAIPCEVRLSKLPSETGNLLRV- 257

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DI+ +  + E I   A+ D LTG+ N+   L++L+ +  LS         V++I++
Sbjct: 258 -SYIDISSRVAAQEKINRLAYFDTLTGLHNQSGLLEQLSALYSLSWQQPG--FAVLLIEL 314

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             +K INDV G  +GD +L  + +R+ + +      ARL G  F  +L     + +    
Sbjct: 315 GDFKFINDVYGNRIGDLLLCHVAQRLQQAIGPHGHAARLGGVEFAALLTGVAGAAEAEAI 374

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  M  +++ P  + E  ++VTASIG +          E++  A++A+Y AK +    V+
Sbjct: 375 ACRMLDAVSEPFPVDEMMLSVTASIGISLGPEHGADGRELMARADMALYRAKEKSARRVQ 434

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +         +RV +++ L  A+++ EL L Y P I L    +VG+EAL++W HP+ G 
Sbjct: 435 VYEEELGQQMRERVELEKSLRHAIDHGELVLHYQPQIELSTRRVVGVEALVRWQHPQKGM 494

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ IAE+  +I  +  ++L    R +  W+D+     + + +N++     D+EL 
Sbjct: 495 IPPMRFIPIAEQSGLILPLGRWVLREACRQLKVWQDKGRD-DLRMAVNLSVAQFTDHELP 553

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  ++ +T  SP  ++L  +ES  M +P++S  ++ R R +GI  ++DDFGT  S L+
Sbjct: 554 DFVADVLKETGVSPRHLELEITESCTMLSPQQSIGMMERFRAMGIHSSIDDFGTGHSALA 613

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S +      EK  A+  +I  +A  +   ++A+ +  +  +  L+ 
Sbjct: 614 YLTRFPVDTLKIDQSFIRNISNDEKGTALCDTIAYLAHRMGLQVVAEGVETQQQLTFLSS 673

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +  D +Q   +  PL        + ++
Sbjct: 674 IHVDVVQGYLLCKPLPAVEAEAFILQQ 700


>gi|297537734|ref|YP_003673503.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylotenera sp.
           301]
 gi|297257081|gb|ADI28926.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 713

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 132/580 (22%), Positives = 262/580 (45%), Gaps = 18/580 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++   + + ++      Q +     R       S D  W+ D              + G 
Sbjct: 148 IMRIKLDKKLIELNEEKQKLIESEARFRDFAEASADWFWESDAQLKI-------QALAGS 200

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            +G     + +     H +        L S     +    Y         +  ++ +  +
Sbjct: 201 PAGLGFYSLVDLAQTCHSHSPSEMLETLKSH----KHFSDYVVHFIDESGKLVYLRVSGK 256

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +++   + Y G+  D++E       +   A  D LTG+PNR  F  RL+  +  ++ 
Sbjct: 257 PIFDADKRFIGYRGVGRDVSEMIALNRRVEFLASHDELTGLPNRNLFKQRLSHAVVKASR 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             N +  ++  D+D +K +ND LG   GD +L+  T+RI E ++  D L RL G+ F +I
Sbjct: 317 T-NSQVLLLFFDLDHFKLVNDTLGHEAGDLLLMMATKRISECIRASDTLCRLGGDEFVMI 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +    +          +      P  L ++ +  T SIG + +    +    +L  A+LA
Sbjct: 376 MED-ASPQDAHRLVRDIIAKFTTPFELYQQRVYCTISIGVSVYPDDTVDPQSLLVFADLA 434

Query: 681 MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N  E +  +        + ++  +  A++ ++L+L Y P +   ++ ++G+
Sbjct: 435 MYRAKQNGRNCFEFYTTNLNFIAHQWLDMENGIRHALKENQLFLEYQPQVENTNQNLIGI 494

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G IS  EF+ IAE+  +I  I  ++LE +   I +W DQA   P  + I
Sbjct: 495 EALLRWQHPERGLISPLEFIKIAEQSSLINQIGDWVLEAVCLQIRTWLDQAYQVP-RVSI 553

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+++ L  + L + ++ + +K     + + +  +E  ++ + +  +  +  +++ G ++
Sbjct: 554 NISARHLRSDSLIQALKTVPAKYQIPTNMLCIEITEHALLDDIDIVKKNMRFIKEAGFNI 613

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFG   S L YL     D VK + + + G   +E+   I+++I+ +A  +   I+A+
Sbjct: 614 SLDDFGMGHSSLMYLKRWSVDEVKIDRTFIDGLQNSEEDRVIVKAIVALADALSLDIVAE 673

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I  +     +   GC  +Q    + PL    I++  K +
Sbjct: 674 GIENQFQADIVKASGCKVVQGFFYSIPLPAAEIVRWFKSK 713


>gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 705

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++RR+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L D
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|251798594|ref|YP_003013325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Paenibacillus sp. JDR-2]
 gi|247546220|gb|ACT03239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Paenibacillus sp. JDR-2]
          Length = 633

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/630 (21%), Positives = 274/630 (43%), Gaps = 19/630 (3%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           Y   +             ++ + F    +             +++  L + +  I F   
Sbjct: 13  YRASQPQVMLRTAALTIAIVAVLFCAAAL-YRNADPVLEWTSSMIAVLAIAITAILFARN 71

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             ++    F   I        L        + D D     +      +  LG     + G
Sbjct: 72  GQMIGFRNFHTPIVETL----LQSEAVPLAILDRD--GVIMEMNVASSNTLGYIRQDLLG 125

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                 P +    R++ + +LD  +  +  +      +         + I   PM   + 
Sbjct: 126 KPLA--PLLEPGSRNSLQEMLDHALQGKSEQRNIN--ITHRSGFPLELQIISSPMMRED- 180

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +++  + ++ D++++K+++E I   A+ D++TG+PNR  F  R+   L  +   D +   
Sbjct: 181 EVIGTVIVSQDLSDRKRNIERIRYMAYYDDMTGLPNRTLFHIRMNESLAFAREHDRM-IG 239

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +D+D++K +N   G   GD +L+ +  R+   +    I+AR+ G+ F ++L    + 
Sbjct: 240 LCYLDLDRFKLVNASFGREFGDMLLLQVAERLTRAIGEQGIVARMEGDEFALLLQDIESE 299

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ + +  M  +I  P  L    + +T S+G  +    +     +LK A++A+   K  
Sbjct: 300 EQLMELSRGMLHAIDEPFELKGFPLHITGSLGAVTSLVKEDDGYSLLKKADIALVKVKES 359

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    +    S+   +R+ ++ ++  A++  E  L+Y P   L+   +VG+EAL++W 
Sbjct: 360 GKNDCMLYSESWSNSSFERLTLQHEMYRAIQRKEFILLYQPQYDLVSGMMVGVEALVRWR 419

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G I   EF+ IAEE  MI  I  ++LE   R   +W+D    PP+ + +N++ +  
Sbjct: 420 HPAKGMIPPGEFIPIAEESGMIVQIGDWVLEEACRQNKAWQDAGL-PPMPVSVNLSIRQF 478

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +  +L   + +++ KT   P  + L  +ES+ M +       L  L  +G+ +++DDFGT
Sbjct: 479 VQQDLASKVASVLEKTGLKPEYLDLEITESMTM-DTGHVSRCLLELTDMGVGISVDDFGT 537

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S   YL   P D +K + S +           I+ +II MA N+   +IA+ +     
Sbjct: 538 GYSSFHYLKNFPIDRLKIDRSFVRDIQQDPSDAEIVAAIIAMAHNLNIQVIAEGVENAEQ 597

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++ L +  CD +Q    + P+    I ++L
Sbjct: 598 MEFLRKHNCDEMQGYFWSPPVSSTDIEQML 627


>gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 705

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKSFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---EASMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++RR+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L D
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|229151715|ref|ZP_04279916.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228631776|gb|EEK88404.1| Sensory box/GGDEF [Bacillus cereus m1550]
          Length = 828

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 312/760 (41%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 137 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+         Y+ +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 368 IVPIMIERQTFGSYV-MVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 664 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 784 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 823


>gi|229061348|ref|ZP_04198695.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228717963|gb|EEL69608.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 883

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 159/725 (21%), Positives = 316/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     + ++       I ++       
Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 228 EDDNSHKNYFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + D+      L   L +    +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNDS------LTKRLQVFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T  +    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + +S+  P  + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A + S  I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPSGGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+       + + + ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFLTMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCEDGMEIIKTIITLAHTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYTNAFT 874

Query: 951 KLLKE 955
           KLL+ 
Sbjct: 875 KLLEN 879


>gi|39996139|ref|NP_952090.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
 gi|39982904|gb|AAR34363.1| sensory box/response regulator [Geobacter sulfurreducens PCA]
          Length = 799

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/626 (22%), Positives = 268/626 (42%), Gaps = 38/626 (6%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIV-----ILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            + M      D+D ++ A   G    V     +      + +++ +    Q +     + 
Sbjct: 174 VVMMTALG--DSDAVREAFDAGATFFVPKPINLSTLPEHLTYLVRSSRVLQELHESEAQN 231

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRDNFR 465
              +    D++         +          G A  +  G +R       +       F 
Sbjct: 232 RALLNAIPDMMLHVCREGTILDF--RAGN--GCAYAAFGGNLRGRTIADLLPPGAAAQFM 287

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   +      +  E+ +              R ++N  G +L    I  D+TE+++S
Sbjct: 288 AQVGHALAT-GTMMVCEYELEGPGG---LNTHEARIVANGTGTVL---AIVRDVTERRQS 340

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A  D+LTG+PNR  F + L  +L  +  D   +  ++ +D+D +K IND LG 
Sbjct: 341 EEMIRYLAHHDSLTGLPNRIFFGEMLELVLSRARRDGK-QVAILFVDLDDFKLINDTLGH 399

Query: 586 AVGDDVLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIADF 633
           A GD +L    +R+   ++  D +A            R  G+ F + L + ++   +   
Sbjct: 400 AAGDHLLREAAQRLKGCVRSSDYVASGAESGLCGNIARFGGDEFILSLGNLDSVDDVVAV 459

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +    +    +   EI V+ SIG + +      +  +++NA++AM+ AK  GG    
Sbjct: 460 TQRIISEFSREFRIDGHEIFVSVSIGISMYPDDAEDTGSLVRNADMAMFAAKEEGGPSFR 519

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F   ++     R+ I+  L  A+E  E+++ Y P + L   EI G EAL +W HP+ G 
Sbjct: 520 FFTRGMNEAAQQRLSIELSLRKALERGEIFVHYQPKVDLSCGEITGFEALARWHHPELGL 579

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +AE+  +I  I  ++L        +W D+     + + IN++S       L 
Sbjct: 580 IPPDTFIPLAEKNGLIVRIGEWVLRAACAQARTWIDE-GFSDLCMAINLSSHQFTSGNLT 638

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++ ++ +T   PS ++   +E ++M   E++  +L  LR +G+ +++DDFGT  S L 
Sbjct: 639 SMVKEVLDETELPPSCLEFEITEGILMERTEKTMRILSELRDMGVRISIDDFGTGYSSLG 698

Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P +TVK + S +       +  AI+++II +A+N+   ++A+ +      + L  
Sbjct: 699 YLKRFPVNTVKIDRSFVREIDSPHEDAAIIKAIIAVARNLNLQVVAEGVESHRQTEFLLA 758

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC+  Q      P+  +    +L+ 
Sbjct: 759 HGCNEAQGFLFGKPVHPDEASLMLRA 784


>gi|307945786|ref|ZP_07661122.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307771659|gb|EFO30884.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 961

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/673 (20%), Positives = 284/673 (42%), Gaps = 43/673 (6%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF---IGLWMAITKRLDNDII 367
             I +    L     + Y   +   R +  I   +           +          DI 
Sbjct: 309 WLIFIGFSALLAFAAVAYLLARQVTRPLTNITRALSGIAGGDFEGDVAGTGRHDEVGDIA 368

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRD 426
           +  ++    +         +     T    +    D       A+      +  +D    
Sbjct: 369 RSVVLLQRSVKERDALRVRVHEKNRTLKAQETKLRDQNMLFDAALNNMSHGLCMFDATGK 428

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            + +      + G                +      +    L          LQ E R  
Sbjct: 429 LIVSNRRYGELFGHKDDQ-----------VQPGMTASQLEALQDGTEISGHELQGE-RHS 476

Query: 487 AADNQF------------HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             +                 ++   +P+ +       +I I+ DITE++++ + +   A 
Sbjct: 477 TDNGDLLVSTSMLKLPSDRIVLKTNQPLVDG-----GWIEISEDITERQEARDRLAFLAR 531

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR  FL+ +  +L            ++ +D+D++K +ND LG  VGD++L  
Sbjct: 532 HDPLTHLPNRVEFLEHMEALLSR-RRKKGGEFAILCLDLDEFKVVNDSLGHPVGDELLRQ 590

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ E+ +  +++ RL G+ F ++     +   + + A  +   ++ P  L + ++TV
Sbjct: 591 VGIRLTEITENDELVVRLGGDEFAVVTELPVDRQSVDELARCIISQLSQPFQLADHQVTV 650

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
             SIG A   +  + + ++ K A+LA+Y AK  G      F   +S   S+R  +   L 
Sbjct: 651 GTSIGIAFAENDDLVADDLFKQADLALYKAKDDGRKTHRYFEPHMSEAVSERQALLNALR 710

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ +++L L Y P   + + ++ G EAL++W HP+ G +S ++F+ +AEE  +I  I  
Sbjct: 711 DAIAHNQLELHYQPQFEMENFQVCGFEALLRWHHPERGMVSPADFIPLAEETGLIVPIGA 770

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L         W        I + +N++ + L        +   ++ +  +P R++L  
Sbjct: 771 WVLREACMQAAKWPS-----DIRVAVNLSPRQLKVAGFGAELVGALASSGLNPRRLELEV 825

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +E V++ + E    +L + + +G+ +++DDFGT  S LSYL   PFD +K + + +   G
Sbjct: 826 TEGVLLQDSEEVLSILRQAKSLGVRVSMDDFGTGYSSLSYLRSFPFDKIKIDQTFVRSMG 885

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +E+ +AI+R++I +AK+++ T  A+ +     +  L  +GC  +Q  +   P+   + L
Sbjct: 886 DSEEAVAIVRTVIELAKSLKMTTTAEGVETREMLDILKEIGCTDVQGFYFGRPMPLANTL 945

Query: 951 KLLKERFPLVKNT 963
           +L+ E FP   + 
Sbjct: 946 ELIGEHFPESHHA 958


>gi|326794453|ref|YP_004312273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326545217|gb|ADZ90437.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 977

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 139/594 (23%), Positives = 268/594 (45%), Gaps = 25/594 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
              L+               + I +  +R S+A     + +   D     +        +
Sbjct: 401 FDALVTELNQARKRLLDESEEKIKTQLDRLSIAFETIPEGLCMTDAKGQLLLCNERFKAL 460

Query: 438 LGLASGSMH--GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHW 494
             L    +    P R+ L   +         ++ +          YE +R+       H 
Sbjct: 461 YELHKDEVQQGTPFRDVLRICN----RRGAKLIPNMSDGESRSYLYEKYRI----GAEH- 511

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
              RI  +  +       I + +DIT++K+  E I   A+ D LT +PNR+ FLD    +
Sbjct: 512 -EKRIISVRTAETIEGGLISVHDDITQRKQQQEQIEHLAYHDTLTHLPNRRLFLDDCQGL 570

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  S  D     TV  +D+D +KK+ND LG  +GD +LV+++ R+         + R+ G
Sbjct: 571 IRES--DHTPELTVFFMDLDLFKKVNDTLGHPIGDQLLVAVSERLKSNFSAYGQIYRVGG 628

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++    +  ++   A  +  +++ P  + +  I +  SIG +      I +S+++
Sbjct: 629 DEFAMLIQGIEDISELQSLAQKIIGAVSSPYVIQKNHILIGVSIGISRAPIDGIDTSQLM 688

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A+LAMYH+K  G N    F     +   D+  ++  L  A+ N EL L Y P      
Sbjct: 689 KSADLAMYHSKEEGRNQYSFFVPEMSQAIKDKREMEMQLRDALSNGELELAYQPKWGFRS 748

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            E+ G EAL++W H   G IS ++F+ IAEE  +I  I  ++L     + + W +     
Sbjct: 749 GEVEGFEALLRWPHKTRGPISPADFIPIAEETGLIVEIGEWVLLHACMEAMHWPN----- 803

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I + +N++        L + +++ ++++   P R++L  +E  +M + + +  +L  +R
Sbjct: 804 DIEVSVNVSPIQFSAKSLLKDVRSALAQSGLPPERLELEITEGALMQDTDANLEILEAIR 863

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++GI + LDDFGT  S L Y+    FD +K + S +    +++   A+++++  +  N+ 
Sbjct: 864 EMGIKIALDDFGTGYSSLGYIRRFSFDRIKIDKSFINDVLTSKDSQAVVQAVCGICANLN 923

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKNT 963
              +A+ I  +I +  L + GC   Q   +A P+    + + L+     L K +
Sbjct: 924 IESVAEGIEEQIQLDYLNKEGCSQAQGYLIAKPMKPEIVSEFLERPHRYLTKTS 977


>gi|229117233|ref|ZP_04246611.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228666133|gb|EEL21597.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 883

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 164/725 (22%), Positives = 317/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +  +  +  +       I ++       
Sbjct: 168 PTVFNSKRKIYIFIFVLISSATFNYIYFYLYSHLANDTITLLRLLYRVPILLIAIAGSIS 227

Query: 304 PM---------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                      V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 228 DDYNSNKNYFTVHPKLGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLI- 286

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +I    +  + +        L   +             + S+ +    ++        
Sbjct: 287 RHSIVGMQNATLTKRLQAFNAQLEDKV-----TLRTSDLVHKSEALSEKQQKFESLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    T L+     
Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSVLLGAPTNELLGETC--FSIILDEDKHKLLTALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   LQ   +    D   +++ + I P+   NG I     +  DIT QKK  E I   AF
Sbjct: 400 KSASLQLSSQY--KDGFIYFLYVTIVPIM-INGQISGSYIMVKDITAQKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  + T  N    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDAVTKIGNRAYFHKKLRKVIKNAQT-INSEFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     ++R+ G+ F I++ +  +   +      + +S+  P  + E+++ V
Sbjct: 516 VAQRFQSCLPSHTYVSRIGGDEFTILIENYTDHDSLFQLCNELFESMKKPFVIHEQKLNV 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I +S +LKNA +AMY AK +      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDASTLLKNANVAMYDAKEKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + +   ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWH-VLGYSHLKIGVNLSAKEFEQEDFVKSISFTLATTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K       M+ 
Sbjct: 755 TERIAMMDERETLIKLRTLKNLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFMTMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +E ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYSNAFT 874

Query: 951 KLLKE 955
           KLLK 
Sbjct: 875 KLLKN 879


>gi|118592942|ref|ZP_01550330.1| hypothetical protein SIAM614_01931 [Stappia aggregata IAM 12614]
 gi|118434476|gb|EAV41129.1| hypothetical protein SIAM614_01931 [Stappia aggregata IAM 12614]
          Length = 944

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/575 (24%), Positives = 258/575 (44%), Gaps = 32/575 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                  +         A+      +  +D     + +    A +  L  G         
Sbjct: 376 LRSQEAQLREQNVLFDAALNNMSHGLCMYDANGRLIVSNQRYAELFQLEPG--------- 426

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-- 510
              +           L        G     +  R  D+++         +  S+G I+  
Sbjct: 427 --KVKPGMTAAQLATLQKVEAVETGDSAL-YESRLPDHRYASGSQSTEMVKISSGRIVLT 483

Query: 511 --------RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                    ++ I+ DITE++++ + +   A  D LT +PNR  F D+L  +L+      
Sbjct: 484 TRQPLAEGGWVAISEDITERQEARDRLAFLARHDLLTQLPNRIEFRDQLDMLLNQQMVKG 543

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ +D+D++K +ND LG  +GD++L  +  R+ +L+   D++ RL G+ F I+  
Sbjct: 544 G-EFAILCLDLDEFKTVNDSLGHPIGDELLRQVAERLRKLIGRKDVVVRLGGDEFAILTG 602

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +    + + A ++   I+ P  + + EI +  SIG     +      E+ K A+LA+Y
Sbjct: 603 LPSRLKDVEELAQSVIWEISQPFQITDHEIVIGVSIGITIARADGTAGDELFKQADLALY 662

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    F        +DR  +  DL  AV N EL L + P   L D+ I G EA
Sbjct: 663 RAKEDGRNTYRFFETDMGTAVNDRRELITDLRTAVANGELELYFQPQYTLADDRISGFEA 722

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HPK G +S ++F+ +AE+  +I  +  ++L    R    W D      + + +N+
Sbjct: 723 LVRWNHPKRGMVSPADFIPLAEDTGLISQLGEWVLMEACRIAAKWPDH-----LRVAVNL 777

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + + L  +     +   + +T     R++L  +ESV++ + E     L + + +G+ +++
Sbjct: 778 SPRQLRGHAFGPVLIDALVQTGLKADRLELEVTESVLLTDSEDVLDSLHQAKSLGVKVSM 837

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   PFD +K + S +     ++  I+I++++I +A N+  T  A+ +
Sbjct: 838 DDFGTGYSSLSYLRRFPFDKIKIDQSFVRSMAYSDDSISIVKAVIELANNLNMTTTAEGV 897

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                +  LT +GC   Q  ++  P+  +S   L+
Sbjct: 898 ETRQLLDMLTEIGCTEAQGYYLGRPMPVDSTEDLI 932


>gi|160896528|ref|YP_001562110.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160362112|gb|ABX33725.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 636

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/653 (22%), Positives = 270/653 (41%), Gaps = 35/653 (5%)

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
                   L + + + +                +L  +  +              +  A+
Sbjct: 1   MTLYVCAGLLWLWGVEWLLAHLQIPPEAAAQRRMLSSVTLV--------------LVTAV 46

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRV 428
            GG +L  +  G       +A G          ERQ LA   V  + + V   D     +
Sbjct: 47  GGGWLLWRMRRGERTAHAAMAAG------READERQRLATAVVDNTMEGVVVTDARSRIL 100

Query: 429 TTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +       +LG     M G   R +    H  D+  +  + DS      G  Q E   R 
Sbjct: 101 SVNSAFTRLLGYTEQEMLGKTPRMFKSGRH--DKAFYEAMWDSM--QATGHWQGEIWNRR 156

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            + +     + +  + ++ G +  Y+ +  DI+ +K     +   A +D LTG+PN   F
Sbjct: 157 KNGEVFPERMSLSAVKDAQGKVTHYVCMFTDISAEKAREAQLEFLAHRDMLTGLPNSVRF 216

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   +  +A +      VM+++ID++K +ND  G A+GD VL  +  R+ + L   D
Sbjct: 217 TALLEDAVAEAAAEQGT-LAVMLLNIDRFKDVNDSYGHAIGDQVLRHIAARVHDSLGPQD 275

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN-LLEREITVTASIGFASWTSS 666
           ++ R++G+   ++    +        A  +  +   P +      +    S+G   + S 
Sbjct: 276 LIGRMAGDELAVLCKGMSERGDAIARARQLIAAAGQPWSSPDGLSVMAGVSVGICMYPSH 335

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVY 724
              + ++L+ A  A+Y AK R G     F         +R+ ++  L  A++   L L +
Sbjct: 336 AGNAQDLLQGAHAAVYGAKSRSGRAWCFFEEDMTSAARERLAMEARLRQAIDLGHLRLYF 395

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P I L    +VG EAL++W  P  G IS + F+ +AE   +I A+ L++L         
Sbjct: 396 QPQIDLATGRLVGAEALVRWLDPDEGLISPARFIPVAESSGVIGALGLWVLREACAQGRR 455

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           WRDQ   P + I +N++    L  ++       ++ T ++P  ++L  +ES +   PE +
Sbjct: 456 WRDQGL-PEMTIAVNVSLHQFLLTDIAGATADALAATGFAPHCLELEITESALAERPEEA 514

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
             ++ RLR  G+ L +DDFGT  S L++L   P D +K +   +     +   +AI  S+
Sbjct: 515 LAVMRRLRAQGLRLAIDDFGTGYSSLAHLKRFPLDLLKIDQGFIRDIPHSADDMAISGSV 574

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I +   +   ++A+ +     +  L   GCD+ Q    + PL   +  + + +
Sbjct: 575 IALGHAMGLKVLAEGVETAEQLAFLRGKGCDFFQGYLCSKPLPAQAFGEWVSD 627


>gi|148259538|ref|YP_001233665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidiphilium cryptum JF-5]
 gi|146401219|gb|ABQ29746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Acidiphilium cryptum JF-5]
          Length = 1114

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/600 (22%), Positives = 265/600 (44%), Gaps = 27/600 (4%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR- 427
              +     +   L  FT  Q                 R    +  +G +++   +  D  
Sbjct: 515  LLVELTANMTKALQAFTTRQERDDALMAH---SMSERRIDRLLAATGVVLYALALHGDEA 571

Query: 428  --VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
              V  + +I  +LG A+G++ G +  W  ++H  D    +  L        G+  + +R+
Sbjct: 572  VLVDMSENIVDMLGYATGNIRG-LDWWRNHVHPEDLP--QAALGVPRTVESGQFVHRYRI 628

Query: 486  RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            R  +  + W+        ++ G+ +  +G+  DITE++++ E I   A  D LT +PNR+
Sbjct: 629  RHQNGGYRWIHDEKTLQRDAAGNPVGIVGVWIDITERREAEEQIYRLAHIDPLTELPNRR 688

Query: 546  SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
               +RL  +L  +     ++  ++ ID+D++K IND+LG + GD  L    +R+ + ++ 
Sbjct: 689  LLNERLREVLIEARRT-GVQGALLFIDLDRFKTINDMLGHSAGDSALRQAAQRLRQAVRA 747

Query: 606  PDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSI-AMPINLLEREITVTASIG 659
             D +AR+ G+ F +++    +     +   A  A  M  ++ A PI++ ERE  + ASIG
Sbjct: 748  ADTIARVGGDEFVVLIADAGSTVADAADHAATIARKMIDALTARPISIGEREYHLGASIG 807

Query: 660  FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
            F  +     T   +++ A+ AMY AK  G   V  FR S   S      I++++  A++ 
Sbjct: 808  FTMFPKPDDTIDTLIREADTAMYQAK-AGEADVVMFRQSMHLSIVARHAIEDEIRSALKA 866

Query: 718  SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
                +     + L   + VG E L++           SEF+ IAE   +I  +  ++L  
Sbjct: 867  GRFEIWLQDQVEL-GGKPVGAEVLLRLRDRDGRIAVPSEFIGIAESSGLIVPLGRWLLRE 925

Query: 778  IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                +   R   + P   + +N++ +   D      + A +  +     R+ L  +E+++
Sbjct: 926  ACALLA--RAHRDRPDWRLSVNVSPRQFRDPAFVTDVIAALDISGVPADRLTLEITENLL 983

Query: 838  MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896
            + +      ++G L   G+  ++DDFGT  S L YL  +P   +K +   +    +    
Sbjct: 984  IRDTFEIARIMGILADRGVRFSVDDFGTGYSSLHYLRQLPIHEIKIDRGFIGQVPDDASS 1043

Query: 897  -AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             AI+ +I+ MA+ ++  ++A+ +     +  L   GC  +Q    A P+  +     L+ 
Sbjct: 1044 VAIVEAILAMARRLDLDVVAEGVETPEHVAFLKARGCPRMQGYFFACPIPVSE---WLER 1100


>gi|47568240|ref|ZP_00238943.1| sensory box protein [Bacillus cereus G9241]
 gi|47555068|gb|EAL13416.1| sensory box protein [Bacillus cereus G9241]
          Length = 909

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/724 (21%), Positives = 316/724 (43%), Gaps = 26/724 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 253

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  LA+        +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDHNSHKNYFIVNPIIGKKALAAFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 368 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKHKLASALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +Q   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESASIQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKKVIKSAKKTES-EFALLYLDFDRFKAINDTLGHSAGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + +SI  P  + E  +T+
Sbjct: 542 VAKRFQSCLPSHTYLSRIGGDEFTILIENYTDEYALFELCNQLFESIEKPFVIHEYTLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNAVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 662 NAIQNEELFLLYQPQVNSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+    +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 722 WTLEQACEQMKRWHS-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLANTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNKCQFIQGYYYSKPIHTHAFT 900

Query: 951 KLLK 954
           +LL+
Sbjct: 901 ELLE 904


>gi|324327640|gb|ADY22900.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 906

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 156/724 (21%), Positives = 315/724 (43%), Gaps = 26/724 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLH--WNRWHAKVGYITFSGIACIAILFCMS- 300
                          + +SS+   +++ YL+   +     +  + +     +  +     
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTEAITLLRLLYRIPILLIAIAGSIS 250

Query: 301 ------FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                   Y +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG+ +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGVPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKRIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDHILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNKCQFIQGYYYSKPIHTHAFT 897

Query: 951 KLLK 954
           +LL+
Sbjct: 898 ELLE 901


>gi|71909307|ref|YP_286894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71848928|gb|AAZ48424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 930

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 270/590 (45%), Gaps = 14/590 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTT 430
            L +  +L+    +   +      +G      + +LA      S + +   D  +  V  
Sbjct: 330 ELSISGLLVLLAFMLAGILIRQIQRGRRVAEHQLNLAEAVFANSVESILVTDADQRIVEV 389

Query: 431 TPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
            P    I G +   + G   R      H  D   F  +            + E   R  +
Sbjct: 390 NPAFLRISGYSRSEIIGQHPRILKSGRH--DAAFFARMWQEL--NANDTWEGEVWNRRKN 445

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            + +  ++ I  + + +G ++ Y G+  D+++QK     +      D LT +PNR+S+L 
Sbjct: 446 GEIYPALLSIAVVRSQDGKVVNYTGMIFDLSQQKTVEALLDQLRTFDGLTALPNRESWLS 505

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L   L  +  + + R +++ +D+D++K IND +G +VGD VL+    R+   L+  DI+
Sbjct: 506 ALEQQLANAKRNSS-RFSILQLDLDRFKAINDSMGYSVGDQVLIEAAERVKVSLRKYDIV 564

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL GNRF I+L    +   I      +  + A P  +      ++ASIG A + +  + 
Sbjct: 565 ARLGGNRFSILLNEIVDPQTIGGICEKLLTAFARPFQMGGINAHISASIGVAIFPNDGLD 624

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727
           S  ++  AE A+Y AK  G N  + +             ++  L +A++ +E  +VY P 
Sbjct: 625 SKTLMMAAESALYSAKADGRNLYKYYSHEMNEMGTHLFKLERMLRVALDRNEFSVVYQPQ 684

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +   + E+VG+EAL++W +P+ GN+S+ +F+ +AEE  +I +I  +++        +W+ 
Sbjct: 685 VNAKNGELVGVEALLRWHNPELGNVSAVQFIPVAEETGLIVSIGEWVMRAACHQARTWQT 744

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +     I + +N++++    N+L   +Q ++ +T      ++L  +E  ++ +P  +  +
Sbjct: 745 ELGFE-IPVAVNLSARQFRRNDLLASVQTILDETGLPNRLLELEITEGSLIVDPIGAIDI 803

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           +  L  +GI   LDDFGT  S L+YL   P + +K + + +      E   AI  +II +
Sbjct: 804 MRGLNCLGIKTALDDFGTGYSSLAYLKAFPLNRLKIDRAFVRDLPDNESDCAISNTIIAL 863

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             N+   ++A+ +  E     L   GC   Q      P+    + + L+ 
Sbjct: 864 GLNLNMEVLAEGVETEAQRDFLAAAGCQVFQGYLFGKPMSGEDLTQRLQS 913


>gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 705

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 144/585 (24%), Positives = 263/585 (44%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMD 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++ R+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSHRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L D
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|238063361|ref|ZP_04608070.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885172|gb|EEP74000.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 722

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 138/611 (22%), Positives = 270/611 (44%), Gaps = 22/611 (3%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGY-----FSQGIFSDGERQSLAVLGSGDIVWDW 421
           +Q  L  G    +    FT  + +  + +       Q +     R     +G+   +   
Sbjct: 113 LQGGLAAGFAQALRDRTFTQQERIARSAWQARDIVEQALRDSEARFRAVFVGAAIGIGIA 172

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
            +    +      A +LG +   +     N     H +D      +    +  +   ++ 
Sbjct: 173 GVDGQIIEVNQSFADMLGYSVAELRRT--NVASLFHPDDAAGMWELYQELIEGKHDAVRV 230

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R    D    W  + +  + + +G     + +  DITE+ +  + +   A  D LTG+
Sbjct: 231 EKRYYRKDGSVVWTDLAVSLIRHDDGRPRFTVAMIEDITERYELQQRLRFQALHDPLTGL 290

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F + L  +LD +    + R  V  +D+D +K +ND LG  +GD +LV + RR+ E
Sbjct: 291 PNRTLFFETLGRVLDDAG--PDHRIGVCFLDLDGFKAVNDSLGHDLGDRLLVEIARRLAE 348

Query: 602 LLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            +     ++AR+ G+ F I++            A     +++ P+++ ++++ V+ASIG 
Sbjct: 349 CVAGHGHLVARMGGDEFVILVDGGEGIDDAVGVAEMALAAVSAPVHVGDQQLAVSASIGI 408

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718
               S + ++SE+++ A+  +Y AK  G      +       D     +   L  A++  
Sbjct: 409 VECPSGETSASELMRAADTTLYWAKAEGRGRWAVYDPERSARDIARSALVAGLPAALDRG 468

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  + Y PI+ L+D  +V +EAL++W HP+ G +   +F+ +AEE  +I  +  ++L + 
Sbjct: 469 EFVVHYQPIVSLLDSSMVAVEALVRWQHPELGLVGPDQFIGLAEETGLIVRLGEWVLGQA 528

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            RD  +WR +     + + +N+A++   D  + E +   + +T    + ++L  +ES VM
Sbjct: 529 CRDAEAWRREFPEAKLVVSVNLAARQADDPAIVETVACALGRTGLPAALLQLELTESAVM 588

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS------- 891
           G        L +L ++G+ L +DDFGT  S L+YL  +P   +K  G  + G        
Sbjct: 589 GTAGEPLRALHQLAELGVRLAIDDFGTGYSNLAYLRRMPIHCLKLAGPFVEGIRPGDADN 648

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               +   I+ +++ +A  +E  + A+ +      + L  + CD  Q      P+    I
Sbjct: 649 PTDHRDERIVDALVRLAHALEMWVTAEAVETGAQAERLRSLRCDTGQGRWFGPPVPAAQI 708

Query: 950 LKLLK-ERFPL 959
              L+ +  P 
Sbjct: 709 TARLRGDHVPG 719


>gi|239825960|ref|YP_002948584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
 gi|239806253|gb|ACS23318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. WCH70]
          Length = 818

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/578 (23%), Positives = 248/578 (42%), Gaps = 20/578 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+G  +           Q +     R         + +    +    +        + G 
Sbjct: 252 LLGIYMQVERKLFEKHKQALEVSENRFKRLAESIMEGIIVH-VHGKVIEANKAACRLFGY 310

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +       L  +           L       +  L YE ++R  D       + ++
Sbjct: 311 VESELIHMPVQDLMIL---------ESLKKIEHNDQEEL-YEIQLRRKDGTIFPAEM-VQ 359

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              + +G  +    I  DITE+K + E +   A  D+LTG+PN+++    +T  +  +  
Sbjct: 360 REYDHDGRKVNVTAI-RDITERKNNEEKMHYIATHDDLTGLPNKEALHRAITEKIQEA-F 417

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D      +M ++I   K IND  G +VGD VL+ +     +      +L R SGN F  I
Sbjct: 418 DRQEEVAIMFLEISGMKTINDFYGYSVGDQVLLQIVEEWKKRSCKDVLLGRWSGNEFIAI 477

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L       K    A    +    P+ +  RE+ VT  IG + +    +    +++ A++A
Sbjct: 478 LSGST-KEKATVAANQFSEIADEPVIVEGRELYVTIKIGISLYPQDGMDPKTLIRKADIA 536

Query: 681 MY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            Y    K           ++    +++ ++ +L  A+E  E  L Y P I+L    + G+
Sbjct: 537 RYKLRQKPASQFLFFEEPMARVIQEKIGMERELRRALEKGEFELYYQPQIQLDTGMVTGM 596

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W+HP+ G IS   F+ +AE+  MI  IN +++    +      +    P + + +
Sbjct: 597 EALIRWNHPEKGLISPYAFIPVAEQTGMIIPINEWVIRMACQQTKQLLNDF--PNLSVSV 654

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++  +  +      +  L+ +T   P  + L  +E + + + ER+  +L RL+ IG+++
Sbjct: 655 NLSPYEFENRRFVHKLMKLLEETGLPPHHLDLEITERMTI-DTERAITILKRLKSIGVTI 713

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           ++DDFGT  S LSYL  +P D +K + S +     K+ AIL SII +  NI   ++A+ +
Sbjct: 714 SMDDFGTGYSSLSYLTDLPIDRLKIDRSFVRNIRGKKEAILPSIIRLGHNIGVKVLAEGV 773

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             E ++  L    CD  Q  + A PL +  +   L E 
Sbjct: 774 ETEAEVAYLKDKHCDEAQGYYFAQPLSYKELKAFLYEH 811


>gi|89900767|ref|YP_523238.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Rhodoferax
            ferrireducens T118]
 gi|89345504|gb|ABD69707.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1355

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 144/552 (26%), Positives = 253/552 (45%), Gaps = 14/552 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTI 467
                  + +   D     +      + I G     + G     L           +  T 
Sbjct: 531  VFAQGREGITVTDARGHIIMVNRAFSEITGYTQAEVLGQNPRILKSERQSPEFYLDMWTA 590

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            L        G    E   R  D   +   + I  + +S G    Y+   +D++  K +  
Sbjct: 591  L-----TTSGHWAGEMWNRKKDGTVYPEWMAISALRDSQGLTTHYVASFSDLSTAKAAES 645

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I   +  D LTG+PNR    DR    L +         T++++ ID +  +ND LG  +
Sbjct: 646  RIQWLSQFDTLTGLPNRTLLQDRTALALSMVQRA-REPLTMLLVAIDHFGAVNDTLGHQL 704

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD++LV + RR+ + ++  D ++R+ G  F ++L     ++  A  A  +   ++ P +L
Sbjct: 705  GDELLVEMARRLSDSVREQDTVSRMGGKEFVLVLPG-TPAMGAAHLATELLWKLSRPCSL 763

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RV 705
               E+T+TASIG AS+  +      + K  E+AM+ A+ +G +  + +    +       
Sbjct: 764  GMHELTLTASIGIASFPDNGADFDTLFKAVEIAMHRAQLKGRDTYQFYSDDMYEQVLAHD 823

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + + L  A+   +L LVY P + L   +I G+EAL++W HP+ G +S  +F+ +AEE  
Sbjct: 824  RLIKALRQAIVLDQLQLVYQPQVDLQTGQICGVEALLRWQHPELGAVSPGQFIPLAEESG 883

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  I  ++L R  +DI  W D     P  + IN +     DN L   ++A ++++   P
Sbjct: 884  LIIGIGEWVLRRACQDIRRWLDHGIKVP-HVAINASPLQFRDNNLVLQVKAALTESQIDP 942

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            + I +  +ES +M +  R+  +L  L+ +GI L+LDDFGT  S LSYL   PFD VK + 
Sbjct: 943  ALIYIEVTESALMDDVPRNEAMLKALKDLGIKLSLDDFGTGYSSLSYLKRFPFDQVKIDQ 1002

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +     ++    +++ I+ MA  +   +IA+ +  E   + +    CD IQ      P
Sbjct: 1003 SFVRDIATSQSDSLLVKVIVSMAHGLGMKVIAEGVETEAQCEIMRTSICDEIQGYFFCKP 1062

Query: 944  LGFNSILKLLKE 955
            +   +I +L  E
Sbjct: 1063 ISAQAIEELFSE 1074



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            ++        +    +R  L    + D++W  D+       +P +  + G  S  +   
Sbjct: 382 RIVRQRRAETALHESEQRHRLLADNASDVIWTMDLKGRFTYVSPSVEKLRGFTSAEVMQQ 441

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRG-----RLQYEFRVRAADNQFHWMIIRIRPMS 503
                  +  +        L   +            + E      D    W  I    M 
Sbjct: 442 --TLAQTLCPSSIPVATEALGKSMASMAAGLPFIGFRGELEQPCKDGSTVWTEISTNGMR 499

Query: 504 NSNGDILRYIGIANDITEQK 523
           N  GD +  +G++ +ITE+K
Sbjct: 500 NEQGDFVGIVGVSRNITERK 519



 Score = 68.4 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/429 (11%), Positives = 133/429 (31%), Gaps = 43/429 (10%)

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL--- 381
                 ++   R VL+   +  ++IW     +A       +I+Q ++  G + +V     
Sbjct: 13  LAGTSLIRAAGRLVLVYAVFAGLWIWLSDELLAWLVSDPAEIVQASIFKGWLFVVATSLL 72

Query: 382 -------IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
                  +    +   +             +  +  +  S D ++  D+    +    + 
Sbjct: 73  LYGLLRRLLRQSLVASMREQEAQAENHRSQQLLTALIDSSTDAIFAKDLAGRYLLFNHET 132

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             ++G       G              +  R      +   R    YE  +   D +  +
Sbjct: 133 TRVMGTTPERALGHDDT--ALFPPEQAELIRANDQRVLALNRTT-SYEETLETVDGERVF 189

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN--LTGIP------NRQS 546
           +  +  P+ +SNG ++   GI+ DIT++K+    +   A +    LT +P         +
Sbjct: 190 LATKG-PLRDSNGQVIGLFGISRDITDRKRDETRLTLEARRAEALLT-LPGAAEIMTESA 247

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+     +   +      +   + +  D  + I       + +    +L +         
Sbjct: 248 FMQHGQEL---AEQLTGSQIAFIHLVHDDQETI------ELVNWSRSTLAQYCTSAFDRH 298

Query: 607 DIL--ARLSGN----RFGIILISENN---SLKIADFAIAMRKSIAMPINLLEREITVTAS 657
             +  AR+  +    R  +++    +      + +    + + I +P+ +    + + A 
Sbjct: 299 YPVSQARIWADALRLRTSVVINDYASVMGKHGLPEGHAQLDRLINVPV-IDGGLVRMMAG 357

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
           +G      ++     +   A+ A++    +                      D+   ++ 
Sbjct: 358 VGNKPEPYTEADVETVRLIAD-AVWRIVRQRRAETALHESEQRHRLLADNASDVIWTMDL 416

Query: 718 SELYLVYHP 726
              +    P
Sbjct: 417 KGRFTYVSP 425


>gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 705

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 145/585 (24%), Positives = 264/585 (45%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +N   + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELAHKTPAELG---ETSMENLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++RR+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSRRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L D
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLTD 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NRVCGLEALLRWPRPGQAGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|117926252|ref|YP_866869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
 gi|117610008|gb|ABK45463.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Magnetococcus sp. MC-1]
          Length = 1134

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 135/629 (21%), Positives = 273/629 (43%), Gaps = 35/629 (5%)

Query: 358  ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA------- 410
             T    +   Q  L   L +    +   V +        +Q +  +     L        
Sbjct: 511  FTGICHDLRHQHWLQSALKMANDHLESQVAERTEDLTQANQALQQEVAEHQLTQAKLFLV 570

Query: 411  ---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRT 466
                  +   +   D     +   P    + G     + G          H  D   +  
Sbjct: 571  NQVFEKARQAIVITDHNNKILDVNPAYEALTGFQKQQVVGHDPAVGKSGRH--DPAFYAR 628

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +  S +       + E   R +D   +   + I  + +  G +L Y+ +  D+TEQK + 
Sbjct: 629  MWRSLLSEN--HWEGEVWDRRSDGSIYPKYLSIDRVLDRQGSVLNYVAMFQDLTEQKATE 686

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            E +   +  D LTG+PNR  F +RL     ++   +     +++I++D++K+IND  G  
Sbjct: 687  EELERLSHYDPLTGLPNRALFRNRLEHEFLVARRHNR-SVALVLINLDRFKQINDSFGFT 745

Query: 587  VGDDVLVSLTRRIGELLKFPDILAR--------------LSGNRFGIILISENNSLKIAD 632
            VGD +L  + +R+ +L++  D++AR              L G+ F IIL     +   A 
Sbjct: 746  VGDRLLAMVAKRLEQLVRKTDLIARQENRQERDSDTLSRLGGDEFSIILAELRAAEDAAI 805

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A      +  P ++  +E+ +  S+G + +  +  + + M++ AE A+  AK  G N  
Sbjct: 806  VARRTVALLEEPYDIEGQEVFLGGSLGVSIYPENAESLNGMIQCAERALVKAKEGGRNTF 865

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
              +     R   ++V ++ +L  AV      L Y P + +   EI G+EAL++W      
Sbjct: 866  RFYSEEMNRHSAEQVRLETELRRAVMQERFQLHYQPKLEIATGEIEGVEALVRWPRRDGR 925

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
              S   F+ +AEE  +I  +  ++L++   D+++   Q    P+ + +N+++K     +L
Sbjct: 926  MFSPDAFIPLAEETGLIVPLGRWILKQACADVVAINAQRVR-PLRVAVNLSAKQFQQEDL 984

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +   + +T      ++L  +ES++MG+ + +   +  L+ +G++L++DDFGT  S L
Sbjct: 985  EQMVLEALEETGLETQLLELELTESMMMGDVDEAINTMSILKGLGLTLSIDDFGTGYSSL 1044

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            SYL   P D +K + S +       +  AI+ ++  + +++   ++A+ I  ++ +  L 
Sbjct: 1045 SYLKRFPVDALKIDQSFVRDLERDSEDAAIVHAVCNLGESLGMKVVAEGIETQLQMDFLR 1104

Query: 929  RMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++ CD  Q   +A P+    +   L +  
Sbjct: 1105 QLNCDTGQGYFIARPMPLAQLQDFLAQHQ 1133



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 82/287 (28%), Gaps = 15/287 (5%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           L  M++Y        A + +   +        +  +      + L    + +    +   
Sbjct: 287 LVHMAWYTVGQAGRGADVGVIYRLPRQAVLGAFDALVQRSLWINLALVMVALLGSALFAG 346

Query: 356 MAITKRLDNDIIQPALVGGLVL---------IVILIGFTVIQHVLATGYFSQGIFSDGER 406
                      +      G  L          V  IG T ++   A    +Q +  + +R
Sbjct: 347 SVTRPLRHLAQVISGYGRGEHLPLQYTERSDEVGQIGETFLEMRQAIEARTQALEEEEQR 406

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465
            +     + D +   D              + G  S    G   + L   +   + D F 
Sbjct: 407 LNSLFESAVDGILIIDAKGIIQRYNAGACKLFGYTSKEALGKNVSLLMQDVVGQEHDLFI 466

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           T      G R      E   R  D     + + +     + G+   + GI +D+  Q   
Sbjct: 467 TRFLQEGGTRVVGNSREVEARHKDGSALPVQLSVSHFKYA-GE-DYFTGICHDLRHQHWL 524

Query: 526 LEGILCNAFQDNL-TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  L  A  D+L + +  R   L +    L     +  L    + +
Sbjct: 525 -QSALKMAN-DHLESQVAERTEDLTQANQALQQEVAEHQLTQAKLFL 569


>gi|268680809|ref|YP_003305240.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618840|gb|ACZ13205.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 1196

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 149/608 (24%), Positives = 267/608 (43%), Gaps = 12/608 (1%)

Query: 354  LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
            +  ++   +D  +   A +   V         + Q +       +      E  +     
Sbjct: 594  MAHSLKGYMDTVMTLNASLEKKVQERTSELLLLNQTIQEQLDIKKEQEEKLEIFAKIFSN 653

Query: 414  SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFV 472
            + + +   ++    +      + +   A   + G  IR    Y H +    ++ I D+  
Sbjct: 654  TIEGIAITNLEGIVLQINDAFSAMTHYAPHEVLGQDIRLLRSYKHPD--SLYKEIWDTVF 711

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                   Q E   +  D   +  ++ I P+ N  G I   + I +DI+  K + E +   
Sbjct: 712  SNTA--WQGELWNKRKDGTLYPALLIIHPILNREGHISYIVFIQHDISVLKHNEEKLHQQ 769

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A+ D LT + NR    DRL   +  + +   L  +V+ +D+DK+K IND LG  +GD +L
Sbjct: 770  AYYDPLTKLANRTLAYDRLQHAITNAKSRRRL-VSVLFLDLDKFKNINDTLGHDIGDLLL 828

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + +RI  L    D + RL G+ F +IL    +       A  +  +++ P  L  R I
Sbjct: 829  IEVAKRIQALCSQSDTVCRLGGDEFLVILEDITHYETAISVAKGIIAALSQPFYLEGRTI 888

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKED 710
            + + SIG   + +   T   +LKNA++AMY +K  G    E F    S F  + V ++E 
Sbjct: 889  STSTSIGITYYPNDGDTMKTLLKNADIAMYRSKTNGRGSYEIFTTALSDFIKESVKLEER 948

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            L  AVE  E ++ Y PI  L  +EI+GLEAL++W++          F+ + EE  MI   
Sbjct: 949  LKKAVEKHEFFMHYQPIYDLQKKEIIGLEALMRWNYKGVTYFP-DTFLSVMEETKMIAEA 1007

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            +  +   +   I    +      +F+ INI+          E +   +  +      + L
Sbjct: 1008 SSNLFISVFHFIKKLNEALGRE-LFVSINISPVQFSVAPFQESLIHALEASTLRAQLVCL 1066

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +ES+ + N E     L  L+  G  + LDDFG+  S L YL  +P + +K +   +  
Sbjct: 1067 EVTESLFLENIEEVSQKLAALKTYGFCIALDDFGSGYSSLQYLKVLPLNKLKLDRIFVQD 1126

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               ++  IAI +S++ + KN    +I + +  E   K L ++GC YIQ   ++ P+   +
Sbjct: 1127 LPDSQSDIAITQSVLALGKNFNVNVIVEGVETEEQCKFLEQIGCRYIQGYLISKPMPEEN 1186

Query: 949  ILKLLKER 956
            +L+ L+E+
Sbjct: 1187 VLEFLREK 1194


>gi|148258560|ref|YP_001243145.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410733|gb|ABQ39239.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 736

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 137/569 (24%), Positives = 249/569 (43%), Gaps = 20/569 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDW-DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +          +      A   G +  +        L    
Sbjct: 179 ELKQREESFRLLFDGNPVPMIVCARSDGRVLGVNEAAAQHYGYSRAAFEQLNIRNLQ--- 235

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                       +       +    ++   AD     + I  R +   + +    +    
Sbjct: 236 ----AYESEPPWAAEHSGEEQAARTWKHVRADGALIDLAIYSRHLV--HNEQPAVLLALM 289

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+K++   +   A  D LTG+P+R     ++   L       + +  V+V+ +D +K
Sbjct: 290 DITERKRAEARLAFLAQHDALTGLPSRNLLRQKIEDKLGQMRR-GSEKMAVLVLGLDNFK 348

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG A GD +L  + +R+  +L+  D++ARL+ + F I+          A     +
Sbjct: 349 SINDTLGHAAGDRLLRGVGKRLRSILRQEDVVARLNSDEFAIVHGGLARPEDAAQLCRRL 408

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
            ++IA P  +    +T+ A++G A   +    + ++LKNA++A+  AK         F  
Sbjct: 409 LQAIADPYLIDGSSVTIGATVGIAMAPNDGDDAEKLLKNADMALSRAKTETRGSFSYFET 468

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            + +    R  I+ +L  A++   L   Y P+I L    I G EAL++W HP+ G I  S
Sbjct: 469 GMDARAQSRRKIEIELRDAIQRDVLQPYYQPLIDLSTGRITGFEALVRWPHPERGMIPPS 528

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+  +I A+   ML R   D  +W D+     + + +N++        +   + 
Sbjct: 529 EFIPVAEDTGLISALGRVMLRRACNDAANWPDE-----VRVAVNMSPLQFRVGNVLSLVM 583

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ ++   PSR++L  +E++V+    +    L  LR +G+ +++DDFGT  S LSYL  
Sbjct: 584 DVLKQSGLPPSRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRS 643

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      R   AI+RSI+ + K +  TI A+ +  E +++ L   GC 
Sbjct: 644 FPFDKIKVDQSFIRDLAANREAQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCH 703

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKN 962
             Q    + P     I+ LL+ +    + 
Sbjct: 704 EGQGYLFSRPRPNAEIVGLLEAQSAADRR 732


>gi|326402744|ref|YP_004282825.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325049605|dbj|BAJ79943.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 1095

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/600 (22%), Positives = 263/600 (43%), Gaps = 27/600 (4%)

Query: 369  PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR- 427
              +     +   L  FT  Q                 R    +  +G +++   +  D  
Sbjct: 496  LLVELTANMTKALQAFTTRQERDDALMAH---SMSERRIDRLLAATGVVLYALALHGDEA 552

Query: 428  --VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
              V  + +I  +LG   G++ G +  W  ++H  D    +  L        G+  + +R+
Sbjct: 553  VLVDMSENIVDMLGYVPGNIRG-LDWWRNHVHPEDLP--QAALGVPRTVESGQFVHRYRI 609

Query: 486  RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            R  +  + W+        ++ G+ +  +G+  DITE++++ E I   A  D LT +PNR+
Sbjct: 610  RHQNGGYRWIHDEKTLQRDAAGNPVGIVGVWIDITERREAEEQIYRLAHIDPLTELPNRR 669

Query: 546  SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
               +RL  +L  +     ++  ++ ID+D++K IND+LG + GD  L    +R+ + ++ 
Sbjct: 670  LLNERLREVLIEARRT-GVQGALLFIDLDRFKTINDMLGHSAGDSALRQAAQRLRQAVRA 728

Query: 606  PDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSI-AMPINLLEREITVTASIG 659
             D +AR+ G+ F +++    +     +   A  A  M  ++ A PI++ ERE  + ASIG
Sbjct: 729  ADTIARVGGDEFVVLIADAGSTVADAADHAATIARKMIDALTARPISIGEREYHLGASIG 788

Query: 660  FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
            F  +     T   +++ A+ AMY AK  G   V  FR S   S      I++++  A++ 
Sbjct: 789  FTMFPKPDDTIDTLIREADTAMYQAK-AGEADVVMFRQSMHLSIVARHAIEDEIRSALKA 847

Query: 718  SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
                +     + L   + VG E L++           SEF+ IAE   +I  +  ++L  
Sbjct: 848  GRFEIWLQDQVEL-GGKPVGAEVLLRLRDRDGRIAVPSEFIGIAESSGLIVPLGRWLLRE 906

Query: 778  IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                +   R   + P   + +N++ +   D      + A +  +     R+ L  +E+++
Sbjct: 907  ACALLA--RAHRDRPDWRLSVNVSPRQFRDPAFVTDVIAALDISGVPADRLTLEITENLL 964

Query: 838  MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896
            + +      ++G L   G+  ++DDFGT  S L YL  +P   +K +   +    +    
Sbjct: 965  IRDTFEIARIMGILADRGVRFSVDDFGTGYSSLHYLRQLPIHEIKIDRGFIGQVPDDASS 1024

Query: 897  -AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             AI+ +I+ MA+ ++  ++A+ +     +  L   GC  +Q    A P+  +     L+ 
Sbjct: 1025 VAIVEAILAMARRLDLDVVAEGVETPEHVAFLKARGCPRMQGYFFACPISVSE---WLER 1081


>gi|87122548|ref|ZP_01078427.1| sensory box protein [Marinomonas sp. MED121]
 gi|86162190|gb|EAQ63476.1| sensory box protein [Marinomonas sp. MED121]
          Length = 1052

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/567 (24%), Positives = 265/567 (46%), Gaps = 12/567 (2%)

Query: 393  TGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                SQ      E + LA     S + +         +T  P + ++ G +   + G   
Sbjct: 470  ARDISQSYKQQEENRLLATFFKQSSEGMVIVSKRGRILTVNPALVSMTGFSPEQLIGS-- 527

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            ++   +       +R++        + + + E+   +  +Q  W+      + + NG I 
Sbjct: 528  SFRKVLSNASYQAYRSMSVDLKNVGKWQGEMEYITLSQQSQPGWV--IATSVLDENGQIS 585

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             ++   +DI++ K+S   +   A  D LTG+PNR     +L+ ++  +   D  +  V  
Sbjct: 586  HFVASFSDISKLKRSQHKLQHLAHHDALTGLPNRTFLTQKLSGMISNARKQDK-QLAVAF 644

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            +D+D++K IND LG   GD +L  + +R+   LK  +++AR+ G+ F +IL   +    +
Sbjct: 645  LDLDRFKNINDTLGHLFGDKLLRVIAQRMYNQLKENEVVARIGGDEFILILDPSDGLEAL 704

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            +    A+ + I   + +  +EI   ASIG + +     +S  + ++A+ A+Y AK  G  
Sbjct: 705  SARLEALNQKIQEMVYIDGKEIMTCASIGVSLYPEDGTSSELLFQHADTALYSAKEAGRA 764

Query: 691  HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              + +    S    +R+ I+  L  A+E  E+ LVY PI     ++ V +EAL++W+ PK
Sbjct: 765  MHKLYASSLSIQAKERLDIESHLAKALEYKEMSLVYQPIYDFKQQKFVKVEALLRWNTPK 824

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G +   +F+ IAEE   I  I  ++LE   R +  W+  +      I +N++   +   
Sbjct: 825  LGQVPPDKFIPIAEETGGILTIGNWVLETACRTMAQWQQASCQIQ-RIAVNVSRIQIARQ 883

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             + E ++ ++  T   P  I++  +ES +M   +     L +L++ G+S+++DDFGT  S
Sbjct: 884  NIFETVKEILILTQCKPQWIEIEVTESAIMNLSKEGLKQLTQLKEFGVSISIDDFGTGQS 943

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             LS L  +P  T+K + S +      E  + I R I+ M+K +    +A+ +      + 
Sbjct: 944  SLSSLKTLPVSTLKIDKSFVQDMPENENDVEIARLILQMSKVLNVRSVAEGVETTEQAQV 1003

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKLL 953
            L  MGCD  Q    + PL   ++   +
Sbjct: 1004 LKSMGCDLCQGYLFSKPLSEEALASFI 1030



 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 15/153 (9%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +         +  +    +  +    D +   +       +     + + L+   + G 
Sbjct: 346 QIRRRTRAESALLREKALLAGIINTIPDHIVYKNTKFQYQVSNSAFESFVNLSKSKLIGN 405

Query: 449 IRNWL------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               L         H  D           V   +     EF +     +   + I   P 
Sbjct: 406 ADKDLFQNKIISLFHPMD--------SKVVQTGKEVRCTEF-IDLDQGESAILDIIKTPF 456

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            ++ G +   I IA DI++  K  E     A  
Sbjct: 457 YDNKGVLTGIISIARDISQSYKQQEENRLLATF 489


>gi|329902010|ref|ZP_08273002.1| hypothetical protein IMCC9480_3764 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548900|gb|EGF33524.1| hypothetical protein IMCC9480_3764 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 556

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 252/555 (45%), Gaps = 26/555 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIAT-------ILGLASGSMHGPIRNWLPYIHINDRDN 463
           +  +GD V+  D     +  +            ILG     +       +  +       
Sbjct: 1   MEAAGDAVFCLDDRGRILYVSQRALEFVGTGVSILGWFLSELAPLSDRLIISL------- 53

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              I  +    R G++    R+        W  +++       G     + +  DI+ Q+
Sbjct: 54  --AITQALESGRSGKINT--RINTRK-SSMWFELQLTNYVTPEGTTALLV-VGRDISVQQ 107

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + E +   A  D LTG+PNR    DRL   +  +        +V+ +D+D++KK+ND L
Sbjct: 108 DTEERLRHMATHDALTGLPNRSLLSDRLQMAIAQAKRTGRG-FSVLALDLDRFKKVNDAL 166

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L     R+ E L+  D LAR+ G+ F  +L    +  +I   A  M  ++ +
Sbjct: 167 GHLVGDTLLRVAGERLRETLRNVDTLARVGGDEFVAVLPGAVSEAEIQTVARRMIANMQV 226

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P  +    + V ASIG A++        ++L +A+ AM HAK  G      +     + +
Sbjct: 227 PFEIQGHTLYVGASIGAATYPDHGDDDVKLLSHADTAMCHAKETGKARCVVYNPQKFNQQ 286

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              V ++  +  AV N E +L Y PI+  +  +++G EAL++W  P+ G +  S+F+ +A
Sbjct: 287 EYDVSMEAAMFDAVRNGEFFLHYQPIVDAVTCQVLGFEALMRWMRPELGPVPPSQFIPMA 346

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  + L      I  +++ A   P+++ +N++ +   +++    M   +S +
Sbjct: 347 ESNGLINLLGAWALRSACMQIKRFQEVAGR-PLYVSVNVSPRQFRNDQFLGVMDNALSMS 405

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             + S + L  +E ++M +PE +  +L ++   G+ + +DDFGT  S L+YL   P  T+
Sbjct: 406 GLAGSELLLEITEGILMSDPEHAEAMLNQISSRGVKIAIDDFGTGYSSLAYLKRFPISTL 465

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +    E  K  AI   ++ +A ++  + +A+ +     ++ L R GC  IQ   
Sbjct: 466 KIDRAFVQDLPESVKDAAICNVVLSLASHLNLSTVAEGVENAAQLEFLARQGCTLIQGYF 525

Query: 940 VASPLGFNSILKLLK 954
              P+   + + LL+
Sbjct: 526 TGRPMLPEAAITLLQ 540


>gi|167589119|ref|ZP_02381507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia ubonensis Bu]
          Length = 749

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 146/644 (22%), Positives = 272/644 (42%), Gaps = 30/644 (4%)

Query: 327 IYHGMKGYERAVLLIPAWILIF---IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
           ++   K +   + L   W + F      +    A+  R             L  I   +G
Sbjct: 116 LWDAYKAFALPLGLRACWSVPFQDEAGAVLGAFAVYHRAPRRPTDEE-TALLRDISSSVG 174

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----- 438
             V Q  +A     + +    E   L V    + +           + P    +L     
Sbjct: 175 LAVHQDRIA-----RQLARSEEHHRLVVNSLNEGILVVSRDGTVTASNPSAQRMLRVQGS 229

Query: 439 --GLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             G    S+     R     I  +D  + R      +     +L +  R+  AD    W+
Sbjct: 230 IVGRRLWSLVTSATREDGTPIPPDDWPSRRA-----LATGAPQLGFTIRLGLADGDMIWV 284

Query: 496 IIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                P+    +      +   ND+   +++ + +   A +D LTG+ NR+   DR+  +
Sbjct: 285 SGNAVPIVKPGDAQAGSVLLSFNDVGPVREAQQKLRYLATRDALTGLYNRRWLADRMRDL 344

Query: 555 L-DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
                   +  R  ++ ID+D +KK+ND  G   GD +L S+  R+   +     L R+ 
Sbjct: 345 FGAHDGAAEAARIAILFIDLDGFKKVNDTSGHDAGDALLRSVASRLAGCVGERHALTRVG 404

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I++   +    +A  A  +  +IA P ++   E  +  SIG +        ++ +
Sbjct: 405 GDEFVILVDDYDAPDDLAALARQVIDAIARPFDVANNEYYLGVSIGISLAPRDGDDAATL 464

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731
           ++NA+ AMY AK RG N    F     +  +    I++ L  A+ ++ L L Y P++   
Sbjct: 465 MRNADSAMYDAKQRGRNTFTFFTAQLNQRLQRRFAIEQSLRRALASNALRLAYQPVVDGR 524

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
               VG EAL++W   + G +S +EF+ +AE+  +I AI  ++LE   R    WR     
Sbjct: 525 SGRTVGAEALLRWTSAELGPLSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIA 583

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P + + +N++ +   D  L E +   +++    PS ++L  +E ++M + +    +L  L
Sbjct: 584 PDLMMAVNLSPRQFHD-GLVESVDRCLAQAGLDPSALELEITEGLLMYDTDTVLPMLRAL 642

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
             + + +++DDFGT  S LSYL   P   +K + S ++G       +AI ++++ MA ++
Sbjct: 643 ADMNVRISVDDFGTGYSSLSYLKRFPLHNLKVDRSFVSGVPEHRDAVAITQAVVAMAHSL 702

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              + A+ +  E     L ++GCD  Q    + PL      + L
Sbjct: 703 GMKVTAEGVETEAQSSFLRQIGCDKQQGYLFSRPLEPAEYARRL 746


>gi|126668290|ref|ZP_01739249.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
 gi|126627207|gb|EAZ97845.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
          Length = 803

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 144/577 (24%), Positives = 273/577 (47%), Gaps = 9/577 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + +       +    + ++ S A+  S   V   D            + + G ++ S+
Sbjct: 227 MRERLNQDIARQEQDALEIQKFSQAIEQSPSSVIICDRQWHIEFVNQKFSQLTGHSALSI 286

Query: 446 HGPIRNWLPYIHINDRDNFRTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G     L   + ++R+    +         R G  Q E      + +  W  + + P+ 
Sbjct: 287 IGKHPGSLGSDNSDNRE-AEKLWKSIRLQVQRVGVWQGEVTSARRNGERFWEQLIVTPIK 345

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++  D   ++ +  DI+ +K+    +L  A  D LTG+PNR   LDRL   L  +   ++
Sbjct: 346 DAKADTTGFLILGEDISIRKRYERQLLRQANYDILTGLPNRMLALDRLKLALAQARR-ES 404

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               VM +D+D +K +ND LG   GD +L+   RRI   L+    +ARL G+ F +IL  
Sbjct: 405 TEVGVMFLDLDNFKHVNDTLGHDAGDTLLIEAARRISSCLRGSSTVARLGGDEFLVILPG 464

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++   +  A  + K+ +MP  L   E+ VT SIG A++ +    S E++++A+ AMY 
Sbjct: 465 LQSAEVSSQVAERILKTFSMPYQLNSHEVYVTTSIGIAAFPADSDNSGELMQHADAAMYQ 524

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G +    F         +R+ ++  L  A++  E  L Y PI+   +  ++  EAL
Sbjct: 525 AKRKGKSDYVHFSPEMSEISHERLQLESRLRRALQQEEFELFYQPIVSTSNGNLLAAEAL 584

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W++P+ G +    F+ +AEE  +I AI  +++++  ++ ++W++Q     I I +N++
Sbjct: 585 LRWNNPEIGQVMPDRFIPLAEETGLITAIGEWVIQQACQNAVTWKNQLGR-DIGISVNVS 643

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +          +   +S +  +   ++L  +E +++ N   +  +L  L + G+ L++D
Sbjct: 644 PRQFRAAGFVTSVMDALSTSGLAAEFLELEITERLILDNSIETAQILQELDEHGVRLSVD 703

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   PFDT+K + S +           ++ +II MA ++   +IA+ + 
Sbjct: 704 DFGTGYSALSYLKSFPFDTLKIDKSFVQDILKDPDDAVLVSAIINMAHSMGLRLIAEGVE 763

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E  ++ L + GCD  Q    + PL      + L   
Sbjct: 764 EEEQVQFLQKAGCDCAQGYFYSRPLPAIEFSQWLDSY 800


>gi|307634790|gb|ADI83877.2| response receiver-modulated diguanylate cyclase/phosphodiesterase
           [Geobacter sulfurreducens KN400]
          Length = 799

 Score =  499 bits (1285), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/626 (22%), Positives = 267/626 (42%), Gaps = 38/626 (6%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIV-----ILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            + M      D+D ++ A   G    V     +      + +++ +    Q +     + 
Sbjct: 174 VVMMTALG--DSDAVREAFDAGATFFVPKPINLSTLPEHLTYLVRSSRVLQELHESEAQN 231

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRDNFR 465
              +    D++         +          G A  +  G +R       +       F 
Sbjct: 232 RALLNAIPDMMLHVCREGTILDF--RAGN--GCAYAAFGGNLRGRTIADLLPPGAATQFM 287

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   +      +  E+ +              R ++N  G +L    I  D+TE+++S
Sbjct: 288 AQVGHALAT-GTMMVCEYELEGPGG---LNTHEARIVANGTGTVL---AIVRDVTERRQS 340

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A  D+LTG+PNR  F + L  +L  +  D   +  ++ +D+D +K IND LG 
Sbjct: 341 EEMIRYLAHHDSLTGLPNRIFFGEMLELVLSRARRDGK-QVAILFVDLDDFKLINDTLGH 399

Query: 586 AVGDDVLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIADF 633
           A GD +L    +R+   ++  D +A            R  G+ F + L + ++   +   
Sbjct: 400 AAGDHLLREAAQRLKGCVRSSDYVASGAESGLCGNIARFGGDEFILSLGNLDSVDDVVAV 459

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +    +    +   EI V+ SIG + +      +  +++NA++AM+ AK  GG    
Sbjct: 460 TQRIISEFSREFRIDGHEIFVSVSIGISMYPDDAEDTGSLVRNADMAMFAAKEEGGPSFR 519

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F   +      R+ I+  L  A+E  E+++ Y P + L   EI G EAL +W HP+ G 
Sbjct: 520 FFTRGMDEAAQQRLSIELSLRKALERGEIFVHYQPKVDLSCGEITGFEALARWHHPELGL 579

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +AE+  +I  I  ++L        +W D+     + + IN++S       L 
Sbjct: 580 IPPDTFIPLAEKNGLIVRIGEWVLRAACAQARTWIDE-GFSDLCMAINLSSHQFTSGNLT 638

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++ ++ +T   PS ++   +E ++M   E++  +L  LR +G+ +++DDFGT  S L 
Sbjct: 639 SMVKEVLDETELPPSCLEFEITEGILMERTEKTMRILSELRDMGVRISIDDFGTGYSSLG 698

Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P +TVK + S +       +  AI+++II +A+N+   ++A+ +      + L  
Sbjct: 699 YLKRFPVNTVKIDRSFVREIDSPHEDAAIIKAIIAVARNLNLQVVAEGVESHRQTEFLLA 758

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC+  Q      P+  +    +L+ 
Sbjct: 759 HGCNEAQGFLFGKPVHPDEASLMLRA 784


>gi|205374991|ref|ZP_03227782.1| sensory box GGDEF domain-containing protein [Bacillus coahuilensis
           m4-4]
          Length = 741

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 272/562 (48%), Gaps = 24/562 (4%)

Query: 404 GERQSLAVLGSGDIVW---DWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHIN 459
            ++    V  S D +    DW      +      + +LG      + G      P++   
Sbjct: 189 EDQYRGLVEMSPDFIAVIRDW----TFIYLNESGSRLLGYEGVEDLIGK--RIRPFVAAE 242

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                +  L      +     +E +V  AD     + + +  +     +    IG   DI
Sbjct: 243 YLGEIQEHLIELDKNKNDHQHFEIKVVKADGGKLDLEMSVMTIVYKGKEARMVIG--RDI 300

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+KK+ E I   A+ D LTG+PNR  F + +   L+    +   +  V+ +D+D++K I
Sbjct: 301 TERKKADETIQYMAYYDALTGLPNRNMFKEHVDKRLN---ENPEEKLAVLFLDLDRFKVI 357

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G ++GD +L  + RR+ +++K   +++R  G+ F ++L +  ++  I   A  + K
Sbjct: 358 NDTKGHSIGDRLLQLVARRLTDVVKESGVVSRQGGDEFLLLLEN-TSTEAIEHTANQLIK 416

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S A P  +++ +  VT SIG + +         ++K+A+ AMY AK +G N+ + F  S 
Sbjct: 417 SFAKPFTIMDEDFFVTTSIGISVYPMDGEEQETLIKHADTAMYLAKDQGKNNFQFFNPSL 476

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +  + ++ ++ +L  A++  EL + Y P   +  E+I  +EAL++W HP++G +S  EF
Sbjct: 477 NKLTTRKMKLEAELRKAIKLDELSVYYQPQYDMQSEKITAVEALLRWHHPQFGMVSPGEF 536

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  +++ER+  D   W+ Q    P  + +N++ + L +      ++  
Sbjct: 537 IPLAEETGLIIPIGEWVIERVLMDQKKWKAQGISYP-RVAVNVSVRQLQERSFVRSVENK 595

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++       ++L  +ES +M N E S  +L  L+++G+++++DDFG   S LSYL ++P
Sbjct: 596 FNQYQGDSCLLELEITES-IMQNVEESIRVLSELKELGVTISIDDFGKGYSSLSYLKHLP 654

Query: 878 FDTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            D +K + S +            +I ++II M +N+   +IA+ I  +     L   GC 
Sbjct: 655 IDKIKIDKSFVDDIGGLCDRNPSSIAKAIIDMGQNMGFLVIAEGIEKKEQRDFLLANGCL 714

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q    +  +  + I K+  E
Sbjct: 715 IGQGYFYSRAVPEDVIQKMWAE 736



 Score = 98.5 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 56/164 (34%), Gaps = 2/164 (1%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
                  +L+  +   T++  ++     ++ +    +R +         +W  D+  + +
Sbjct: 34  LGFSIAHMLLNTIPVITLMILLIYVRKQTKELNQSHQRLNSIFDFLDVAIWSHDLRTNTL 93

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             TP I  + G +    +     W   +H  D        +     +   +   +R+   
Sbjct: 94  MITPGIEKLYGYSLNEFYDDHDLWRKVVHPLDVPVLEERGEKLKEQK--SVTSIYRIFHK 151

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           D    W+     P  +  G+ + +  +  D+T+QK+  +     
Sbjct: 152 DGDLRWIQDSGIPSFDERGNFIDFTSVLFDVTDQKEGEDQYRGL 195


>gi|127513349|ref|YP_001094546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Shewanella loihica PV-4]
 gi|126638644|gb|ABO24287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella loihica PV-4]
          Length = 1437

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/562 (23%), Positives = 261/562 (46%), Gaps = 19/562 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        +   +     G    +   ++ 
Sbjct: 875  QAEEQLRLFERAIENISEGMFILDNKFKFVEVNEACCDLCEKSRNDFIG--ELFKFDLYP 932

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                ++   +   +  + G    E      D     M + +  + +  G +  Y+G+ +D
Sbjct: 933  E---SYSEQIRHILQQQ-GSWSNEVESAKGDGSSFLMELTVDAIYDEQGVLSHYVGVFSD 988

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+ +K+  E +      D LT +PNR S +  L  ++       +   T+MV+D+D +KK
Sbjct: 989  ISRRKQQEEELRKLTNNDLLTSLPNRSSLMVTLGNLVKK-----DTHHTLMVLDLDNFKK 1043

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++L+ + RRI   + +   + RL G+ F I++ +  +    A  A  + 
Sbjct: 1044 INDSLGHQVGDELLIKVARRIESTVPYHTSIYRLGGDEFAILVDNNPDIGSSAVIANHVV 1103

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             + + P  L +  + V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1104 DAFSSPFELTKDRVVVGVSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1163

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R+    ++ +  +   + +    + Y P I L   ++ G+EAL++ +HP+ G I   +
Sbjct: 1164 LNRNAIRQLEVENLIREGLRDDLFEVYYQPKIDLRTSKMAGMEALVRLNHPEHGLIPPGD 1223

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L +      +WR Q       + +N++S+     +L + +++
Sbjct: 1224 FIPLAEENGLIVEIGEVVLRKACFAAQNWRRQNLFNG-RVAVNLSSQQFALPDLQQRIES 1282

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1283 ILRLTQLPAANLELEITEGTVIKQPEKAIKVMMQLSKMGVSLALDDFGTGYSSLSYLKRF 1342

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P DT+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1343 PIDTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEEASQLSILKALKCEE 1402

Query: 935  IQDSHVASPLGFNSILKLLKER 956
            IQ    +  +   S  +LLK+ 
Sbjct: 1403 IQGFIYSKAVNETSFTELLKQE 1424



 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 3/181 (1%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            I   ++I       +   A V  L LI +LI   +++  L      + I    ER  L+
Sbjct: 703 GITQSLSIEITPPWWLSIQAKVVYL-LITLLITGVIVKAALRRREVQRQIAKSEERLKLS 761

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           + GSGD +WDWDI   ++  +    + L                 IH  D++   T L+ 
Sbjct: 762 LWGSGDEMWDWDIETGQIYRSNIWGS-LEFPRDGQRSGEEGEESNIHPMDQERVNTALNK 820

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGI 529
                    +  +RV+  D+Q+ W++ R + +  +     LR  G   +I+  K++ E +
Sbjct: 821 HFYGETDHFEAAYRVKGKDDQWIWILDRAKIVERDEEDKALRMTGTIKNISNFKQAEEQL 880

Query: 530 L 530
            
Sbjct: 881 R 881


>gi|124516000|gb|EAY57509.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum rubarum]
          Length = 702

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 224/438 (51%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K + E +   A  D LT +PNR    DR+   +  +    +   +V  +D+D++K IND
Sbjct: 253 LKAANEKLHYLALHDGLTRLPNRTLLEDRVDQAIRHA-RSGDGTFSVFFLDVDRFKPIND 311

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG + GD VL  +  R+   +   D +AR+ G+ F I+   + +  K+ + A  +R  +
Sbjct: 312 SLGHSTGDKVLQQMASRLSATVGPEDTVARIGGDEFVIVFPEKKDPGKVHEIARRIRDCV 371

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A  + +  + ++VT SIG + +     T   +L +A+ AMY+AK +G   ++ +      
Sbjct: 372 AESMEVDGQSLSVTTSIGISLFPHDGTTFRTLLASADSAMYYAKSKGPGQIQFYSGEMND 431

Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S  + I+   DL   +E  E  L Y P + L   E+  +EAL++W+HP+ G +    F+ 
Sbjct: 432 SAALRIEMENDLRRGIEKEEFVLYYQPKVSLATGEVESVEALVRWNHPEKGILPPHYFIP 491

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AEE  +I  +  ++++R  R+ + W      P + + +N+++   ++ +L   +   + 
Sbjct: 492 RAEETGLIIPLGRWIMDRACREAVIWHQA-GFPRLRVAVNLSALQFINQDLVREILTALE 550

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++  SP  ++L  +ES++M +P+ +   L  +R+ G+ + +DDFGT  S  SYL   P D
Sbjct: 551 RSGLSPECLELEITESLLMQDPDAAMRTLSGIREKGVHVAIDDFGTGYSSFSYLKKFPLD 610

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +T         AI+R+II +  N+   +IA+ +  +  ++ L  M CD  Q 
Sbjct: 611 RLKIDRSFITDICDNPNDAAIVRTIITLGHNLNLKVIAEGVESQAQLEMLKTMECDAYQG 670

Query: 938 SHVASPLGFNSILKLLKE 955
            + + PL    + + LKE
Sbjct: 671 FYNSRPLPPGELAERLKE 688


>gi|323489110|ref|ZP_08094344.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
 gi|323397233|gb|EGA90045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Planococcus donghaensis MPA1U2]
          Length = 658

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 150/663 (22%), Positives = 284/663 (42%), Gaps = 22/663 (3%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           +     ++    +     ++      F+    +K    ++L +  WI    +     + +
Sbjct: 11  VLIVLSILIIFCSSFITLNVNTSRFEFVEKVRVKWILFSILAMELWIWSMQFIGITSLPV 70

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG--ERQSLAVLGSGD 416
              +   ++         ++ +    T++  V         + +D    +    +  + D
Sbjct: 71  DGSVIMTLLSDNNNYINYVVGLFFALTLLVSVFNLHRNKVKLLADEYSRQFDSLIETATD 130

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +   D             ++ G     +       +  I  +          +      
Sbjct: 131 GIVVTDHNGIITQWNHGAESLFGYHKDEVVDQN---VRMIFPD-------AFPTSDIQEF 180

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                E      D     + +         GD   +  I  DIT+Q+KS E I    + D
Sbjct: 181 AGQTRELIGYKKDGSQFPIELSTGYWETVRGD--YHSLIIRDITDQRKSEEKISNLVYLD 238

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+PNR+ + DRL + +D +  D+    TV+ +D+D++K +ND  G  +GD +L+ ++
Sbjct: 239 SLTGLPNRRLYNDRLESTIDQA-LDNKTTHTVLYLDLDQFKLVNDTYGHQIGDQLLIEVS 297

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI   +   D LARL G+ F ++L + +N  K    A  +   +A   +L + E+ +T 
Sbjct: 298 QRIKSCISKADTLARLGGDEFILLLPN-SNYTKAEAVARNILNVLAHAFSLNDEEVFITP 356

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG + + +    S  ++KNA++AMY  K  G N+ + F             I   +   
Sbjct: 357 SIGASLFPADGTDSETLVKNADIAMYRVKEEGKNNFQFFTSEMNDLISRKSKIAMSIRKG 416

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E  E  + Y P I +  E I+G+EAL++W+H K G IS +EF+ IAEE  MI  I  F+
Sbjct: 417 LELGEFSVHYQPQIDIETENIIGVEALVRWNHAKLGPISPAEFIPIAEENGMILHIGEFV 476

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L        +W++   + P  + +NI++K      + E + + +     +P  ++L  +E
Sbjct: 477 LRTACLQTKAWQNA-GVEPFRVAVNISAKQFSQGNISEVITSALENAQLAPEFLELELTE 535

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S ++     +   +  L+ +GI L++DDFGT  S LSYL   P D++K +        + 
Sbjct: 536 S-LIQGATSAIAKMQELKAMGIHLSIDDFGTGYSSLSYLKLFPIDSLKIDQYFTRNINKD 594

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               A++ +II MA+N+   +IA+ +     +  L    C+  Q  +   PL    I +L
Sbjct: 595 AKDAALVDTIIQMARNLGLNVIAEGVETLDQLVYLKNKRCNQAQGYYFQKPLSPEKIEEL 654

Query: 953 LKE 955
             +
Sbjct: 655 YSK 657


>gi|183219731|ref|YP_001837727.1| hypothetical protein LEPBI_I0307 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909867|ref|YP_001961422.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774543|gb|ABZ92844.1| Signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778153|gb|ABZ96451.1| Hypothetical protein LEPBI_I0307 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 694

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 149/597 (24%), Positives = 269/597 (45%), Gaps = 16/597 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           +    L+  L    I++GF     +     F   +    ++           +   D   
Sbjct: 99  VWIIWLLIPLTDSKIILGFDRDVTIQKDISFEFLLQQ--QKYKSIFDNLPMGIAITDEKG 156

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNF--RTILDSFVGYRRGRLQY 481
             V T     T   +  G +     N      I  N    +  ++ L   + ++      
Sbjct: 157 KIVETNKTARTYFDIQDGELLNRTLNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNL 216

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E  +   +N+  W  I   P+   N           DIT+++ + E I   AF D LT +
Sbjct: 217 EIGMI-KENKITWFDILATPIPIEN---FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNL 272

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR S +D+L  I + +    NL   ++ ID+D +K IND  G   GD ++  +  RI E
Sbjct: 273 PNRNSLIDKLFPIFEEARRHGNL-VGILAIDLDNFKIINDSRGHDFGDKIIKLVAYRIRE 331

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            ++  D+++R  G+ F ++L   +N    A  + ++  ++  P  +    I V  SIG A
Sbjct: 332 SIRVYDLISRQGGDEFTVVLPDLSNERDAAVISESILDAMTHPFVIDGERIFVNISIGIA 391

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            + +    S+ +LKNA+ A+  AK +G N    F         +R+ I+  + +A+  ++
Sbjct: 392 LYPTDGKDSNTLLKNADSALNLAKSQGKNCYVFFTEELQTVVAERLEIENRMRIAIIENQ 451

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L+Y P I L   + VG+EALI+W HP+ G IS + F+ I+EE  MI AI  ++++   
Sbjct: 452 FTLMYQPKIDLYTRKPVGVEALIRWRHPERGLISPNVFIPISEETGMILAIGEWVIKSAI 511

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           + +  W+D   +  I + +NI++K      L   +   +      P  +++  +ES VM 
Sbjct: 512 KTMREWKDH-GVKDISMAVNISTKQFKHERLISTIAENLKLYKVDPHDLEVELTESSVME 570

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           N + +   +  +RK+G  + +DDFGT  S L YL  +P  ++K + S ++     +    
Sbjct: 571 NADAAVRTMQEIRKLGAKIAIDDFGTGYSSLGYLKKLPISSLKIDRSFVSEITTDKDSKT 630

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I+ ++  +A N+  +++A+    E  ++ L   G D IQ  + A P+     L  LK
Sbjct: 631 IIHAVSNLAHNLGLSVVAEGAETEEQVRLLAESGVDQIQGFYFAKPMTSEDCLHFLK 687



 Score = 46.1 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V DW    + V+ T   A  L      + G   + L +   +D++N +   +        
Sbjct: 29  VLDW--EGNFVSVTDRFARFLEFEPKEIVGK--SILNFTQEDDKENTQNTFEGLGENPN- 83

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-----SLEGILCN 532
            + +E R+     +  W+I  + P+++S       +G   D+T QK       L+     
Sbjct: 84  IVNFENRLVTKSKEEVWIIWLLIPLTDSK----IILGFDRDVTIQKDISFEFLLQQQKYK 139

Query: 533 AFQDNL 538
           +  DNL
Sbjct: 140 SIFDNL 145


>gi|313682618|ref|YP_004060356.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155478|gb|ADR34156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 778

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 145/588 (24%), Positives = 263/588 (44%), Gaps = 21/588 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + + +         +       +  +  + D +    + R  +      +   G+ S 
Sbjct: 200 FGISRDITEETVSQIRLEKQNALLTSLINSTPDAIVIKGLDRRYIVFNEGASKFSGIKSS 259

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G   +    I           +D  +   +  +++E  +   + + +   +    + 
Sbjct: 260 DAVGKTADE---IFPPKTAGIINAIDDDLLKNQSFIEHEETLIMPNGKMYIYWVTKGLLK 316

Query: 504 NSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             NGDI    GI  DIT +K   +            A  D+LTG+PNR S ++ L     
Sbjct: 317 TENGDIFGIFGIYRDITNEKHHEQIMTNEKDRFDFMAHHDSLTGLPNRLSLMEYL----- 371

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 N     + +D+D +K++ND  G   GD +L+ +   +  +      + R  G+ 
Sbjct: 372 KIKCSQNSPFAFLFLDLDGFKEVNDSYGHRFGDKLLIRIAEVLETITPSNSKIIRTGGDE 431

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +IL       +I      +  ++  P N+   ++ +TAS+G A + S    S ++ + 
Sbjct: 432 FVVILECNEEENRIDLMMQNLVLALRHPFNIDNVDVYITASVGIAMYPSDADNSEDLFQK 491

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY+AK  G N    +      +      I  +L  A+++ EL L Y P +    EE
Sbjct: 492 ADAAMYNAKKSGRNTYSFYESKFTETSIQRTTISTNLKKAIQSGELSLHYQPQVDQFTEE 551

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+GLEAL +W  P+ G +S   F+ IAEE  +I  I  F+L         W D+A +   
Sbjct: 552 IIGLEALCRWFTPE-GAVSPGVFIPIAEESGLILEIGEFVLREGCLKTSKW-DKAGLLNG 609

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + INI+++ L   +  + + +++S+T   P  I+L  +ES ++ +PE    LL  L+K 
Sbjct: 610 RVAINISARQLSHVDFIDTLDSIVSETQCDPKLIELEITESSILNDPEYVIALLHTLKKR 669

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETT 912
           G  +++DDFGT  S LSYL  +P D +K + S +   T+ R    I+++II +AK ++  
Sbjct: 670 GFFISIDDFGTGYSSLSYLKNLPIDKLKIDQSFIRNITDNRKNQTIVKTIIALAKGLDIK 729

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           ++A+ +    +++ L     D IQ  +   P+   S+  L KE  P+V
Sbjct: 730 VLAEGVETSEELEFLRLNQIDSIQGYYFYKPMDSQSVESLFKENRPIV 777



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 55/188 (29%), Gaps = 7/188 (3%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                    +    L      I+        + +         +          V  S D
Sbjct: 47  TYKGFFFIVVTSVLLYLLSYRILRERSLEYTRRLNEQKTAQIQLARQDALLRTIVNSSPD 106

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++  D+    +        I+G++   + G   +             R +  S +   +
Sbjct: 107 AIFVKDLEGKYLLFNNGAGEIVGMSPEKVIGNTDSL--IFSPETASKIRELDRSIISGAK 164

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-AFQ 535
                E+ +  ++ +     +   P+ N  G I    GI+ DITE+  S   +    A  
Sbjct: 165 TITNKEY-LTTSEGKEKSFWVTKGPLFNEEGKIFGLFGISRDITEETVSQIRLEKQNAL- 222

Query: 536 DNLTGIPN 543
             LT + N
Sbjct: 223 --LTSLIN 228


>gi|254759402|ref|ZP_05211427.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
          Length = 908

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDRNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGVFLNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   + + + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  I+  + T ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKKIIKNAKTTES-EFALLYLDLDRFKAINDTLGHSAGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + + +     + E  +T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFECMEKSFVIYEHTLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + + A ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +G+ +++DDFGT  S L+YL   P +T+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGVHISIDDFGTGYSSLAYLPLYPINTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  +S  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVSFLQKNNCKFIQGYYYSKPIHADSFS 897

Query: 951 KLLKE 955
            LLK+
Sbjct: 898 TLLKK 902


>gi|229197860|ref|ZP_04324576.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|228585578|gb|EEK43680.1| Sensory box/GGDEF [Bacillus cereus m1293]
          Length = 911

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 154/712 (21%), Positives = 302/712 (42%), Gaps = 47/712 (6%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG------YERA 337
              +  I  +      ++ Y  +   ++  T+  + L Y   I+   + G          
Sbjct: 201 RKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSISEDRNSNK 260

Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              I                   I +   + ++  + I+        + ++I      +Q
Sbjct: 261 NYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTASSILITGNCIAFIFVLIRHSIVRMQ 320

Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                                      + S+ +    ++         D ++  D+    
Sbjct: 321 NNSLTKRLQVFNAQLEEKVRLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVF 380

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +      + +LG  +  + G        I   D+    + L+         LQ   +   
Sbjct: 381 LNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY-- 436

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D   + + + I P+   +G I     +  DIT  KK  E I   AF D +T I NR  F
Sbjct: 437 KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 495

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +L  I+  + T ++    ++ +D+D++K +ND LG + GD +L  + +R    L    
Sbjct: 496 HKKLKRIIKNAKTTES-EFALLYLDLDRFKAVNDTLGHSAGDYILEEVAKRFQSCLPSHT 554

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            L+R+ G+ F I++ +  +   +      + K +     + E  +T++ SIG A +  S 
Sbjct: 555 HLSRIGGDEFTILIENYTDEDSLFQLCNQLFKCMEKSFVIYEHTLTLSISIGIAIYPHSG 614

Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           I ++ +LKNA +AMY   AK      +    ++     R+ +++DL  A++N EL+L+Y 
Sbjct: 615 IDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQ 674

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  + L++    +  W
Sbjct: 675 PQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 734

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   + I +N+++K+    +  + + A ++ T    S + L  +E + M +   + 
Sbjct: 735 HTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETL 793

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903
           + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + + +  + I+++II
Sbjct: 794 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 853

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A  +  ++IA+ +  +  +  L +  C  IQ  + + P+  +S   LLK+
Sbjct: 854 TLANTLGMSVIAEGVETKEHVSFLQKNNCQLIQGYYYSKPIHADSFSTLLKK 905


>gi|300114022|ref|YP_003760597.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539959|gb|ADJ28276.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 692

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 130/574 (22%), Positives = 252/574 (43%), Gaps = 22/574 (3%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------GSMHG 447
            +  Q + ++  R S  +  + D+V   D+              LG          S+  
Sbjct: 126 RWQRQAVENEHARLSSILEATPDLVAIMDLTGRIHYMNRAGCQWLGFTEKNHYMGASLLD 185

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +W   +                  R G  + E  +         +   +    N++ 
Sbjct: 186 HYPSWTAAL--------MQNTAIPTALRVGVWEGEAVMLNGKGAEIPISQVLLSHRNASH 237

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +     I  DI+E+K   + +      D LT +PNR    DRLT +L  +  +  L   
Sbjct: 238 QVEFLSTIVRDISERKHYEQELQYRVTHDTLTHLPNRVLLRDRLTQVLAHAKRNQRL-AA 296

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +++D +K+IND LG   GD  L +L R +   ++  D L R   + F +IL    + 
Sbjct: 297 VLFLNVDNFKQINDALGHLAGDKCLRALARHLASCIRASDTLGRYGSDEFLVILSDLYSP 356

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      +R + + P+ L   ++ VT SIG + +  +      +LK + +AM++AK  
Sbjct: 357 SDVEAIIKKIRAATSHPLALNNSDVFVTLSIGVSLYPQAGDDEETLLKTSHIAMHNAKRH 416

Query: 688 GGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      +           + ++ DL  A+E  E  L Y P + +   +I  +EALI+W 
Sbjct: 417 GPGQSRYYLPEMNSRGDELLALETDLRRALEREEFVLHYQPQLEVTTGQITAVEALIRWQ 476

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +   +F+ + E+  +I+ +  ++LE   +   SW  +    PI I +N +++  
Sbjct: 477 HPHRGLVPPRDFIPLLEQTGLIEEVGEWVLETACKQAKSWHSEGY--PIRIAVNCSARQF 534

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +   + ++ ++ K    PS ++L  +ESVVM + + +  +L RL+++G++L +DDFGT
Sbjct: 535 QQH-FLDSVRRILQKYALHPSYLELEVTESVVMQDMQSTTYILQRLKEMGVTLAIDDFGT 593

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P  ++K + S +      E+  AI  +I+ +  +++  ++A+ +     
Sbjct: 594 GYSSLAYLKRFPVHSLKIDHSFVRDITNNEEDAAIAETILLLGNSLKLEVVAEGVETGTQ 653

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++      C  IQ   +  P+  N +  L+  + 
Sbjct: 654 MRFFQDRHCHRIQGYWIGRPMPANDLFSLMAGKN 687


>gi|296447498|ref|ZP_06889421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylosinus trichosporium OB3b]
 gi|296254965|gb|EFH02069.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylosinus trichosporium OB3b]
          Length = 825

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 129/561 (22%), Positives = 243/561 (43%), Gaps = 17/561 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +W  D      +          GL                 
Sbjct: 267 ELKEREASFRLLFENNPMPMWVHDPQSLGVLAVNDAAVEHYGLPRERFLAS--TLFDLYA 324

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +       +      RR      +  R A  +   ++   R +   +      + +  
Sbjct: 325 EEEWPAL--AMSRDYPARRHAPDRVWSNRTAGGRVIKVLNYGRELVF-DNRPAVLLAVV- 380

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TEQ+++   I   A  D LTG+ NR  F  RL+  L+           V+ +D+D +K
Sbjct: 381 DVTEQREAAARIAHLAHHDPLTGLANRTLFRLRLSEGLERLDETSAPGIGVLYLDLDGFK 440

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G  VGD +LV++  R+  LL   D++AR+ G+ F ++     +  +    A  +
Sbjct: 441 DVNDAYGHPVGDRLLVAVAERLRRLLPQGDLVARVGGDEFALVQCG-ADRDEAERLACVV 499

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            ++++    +   ++ + AS+G +   +    +  +LKNA++A+Y AK  G      F  
Sbjct: 500 VEALSRTYEIDGHQVNIGASVGVSVAPNDSDDADTLLKNADIALYRAKADGRGVHRFFEP 559

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +      ++ DL  A+   E  + Y PII ++  EIV  EAL++W HP  G++  S
Sbjct: 560 QMAATIHQRRTLEADLRQALRAGEFQIYYQPIIDIVTNEIVASEALLRWFHPMRGSVPPS 619

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE+  +I  I  ++L    R+  SW       PI + IN++        L + + 
Sbjct: 620 DFIPLAEDTGLIVPIGEWVLREACREAASWP-----TPIGVSINLSPAQFRSRALTQAVV 674

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + ++ +     R++L  +E+V++     +  +L RLR +G+ ++LDDFGT  S LSYL  
Sbjct: 675 SALASSGLVAHRLELEITETVLLAENHANLSVLHRLRGLGVRISLDDFGTGYSSLSYLRS 734

Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +    E     AI+R++  + + +    +A+ +     +  L + GC 
Sbjct: 735 FPFDKIKIDRSFVKELPENHECGAIVRAVAGLGQCLGVATVAEGVETLDQLARLRQEGCT 794

Query: 934 YIQDSHVASPLGFNSILKLLK 954
            +Q    + P     + ++L 
Sbjct: 795 QMQGFLFSRPTPAAELRRMLA 815


>gi|229098215|ref|ZP_04229162.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|228685113|gb|EEL39044.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 883

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 163/725 (22%), Positives = 316/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +  +  +  +       I ++       
Sbjct: 168 PTVFNSKRKIYIFIFVLISSATFNYIYFYLYSHLANDTITLLRLLYRVPILLIAIAGSIS 227

Query: 304 PM---------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                      V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 228 DDYNSNKNYFTVHPKLGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLI- 286

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +I    +  + +        L   +             + S+ +    ++        
Sbjct: 287 RHSIVGMQNATLTKRLQAFNAQLEDKV-----TLRTSDLVHKSEALSEKQQKFESLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    T L+     
Sbjct: 342 PDPIFTIDLNGVFLNVNKAGSVLLGAPTNELLGETC--FSIILDEDKHKLLTALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   LQ   +    D   +++ + I P+   NG I     +  DIT  KK  E I   AF
Sbjct: 400 KSASLQLSSQY--KDGFIYFLYVTIVPIM-INGQISGSYIMVKDITAHKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  + T  N    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDAVTKIGNRAYFHKKLRKVIKNAQT-INSEFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     ++R+ G+ F I++ +  +   +      + +S+  P  + E+++ V
Sbjct: 516 VAQRFQSCLPSHTYVSRIGGDEFTILIENYTDHDSLFQLCNELFESMKKPFVIHEQKLNV 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I +S +LKNA +AMY AK +      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDASTLLKNANVAMYDAKEKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+    +  + +   ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWH-VLGYSHLKIGVNLSAKEFEQEDFVKSISFTLATTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K       M+ 
Sbjct: 755 TERIAMMDERETLIKLRTLKNLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFMTMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +E ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCEDGMEIIKTIITLAHTLEMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYSNAFT 874

Query: 951 KLLKE 955
           KLLK 
Sbjct: 875 KLLKN 879


>gi|95930087|ref|ZP_01312826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133781|gb|EAT15441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 946

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 152/585 (25%), Positives = 272/585 (46%), Gaps = 14/585 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATI 437
           L+ F     VL++    +      E+    +     S D V   D+    +        I
Sbjct: 365 LVSFKGDTAVLSSVRDIRERLEKEEQLKQLMTVVENSNDGVLVTDVTGSIIAVNRAFCRI 424

Query: 438 LGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            G     + G   R +   IH  D+  ++ + +    Y  G+ Q E   R  D + +  +
Sbjct: 425 SGYDEEDVLGKTPRMFQSGIH--DKSFYQAMWNELAQY--GQWQGEIWNRNKDGESYPEM 480

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + IR +++  G + RY+GI  D++ +K   + +L  A  D LTG+ NR  F DRL   + 
Sbjct: 481 LSIRALTDDAGTVYRYVGIFADLSNEKALEKKVLHLAQTDPLTGMANRVLFRDRLQQAIK 540

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +         V  + +D +KKIND LG  +GD +L+ + +R+ + L+  D   R SG+ 
Sbjct: 541 HAQRHVTT-LAVYSLGLDHFKKINDSLGHVIGDKILIEVAKRLKKCLRGEDSFCRHSGDE 599

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++     +++  +  A  +  +I +P  +   E+ +TASIG A +         +++ 
Sbjct: 600 FTLMTYGGADAMDASTVATKILNAIRLPFIVDGSELFLTASIGIALFPRDSSDDLGLMQK 659

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AE AM+ +K  G +    F    S      + +   L  A+E  EL L Y P + L    
Sbjct: 660 AENAMHQSKKNGRDCFCYFSREFSQQAEQALHLTNMLHKALEKEELQLYYQPQVDLESRA 719

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+  EAL++W + + G IS ++ + IAEE  +I  I  ++LE++A+ I S   + N   +
Sbjct: 720 IIAAEALLRWHNDEMGWISPAQMIPIAEESGLILPIGQWVLEQVAQQIRS-HYETNKEWL 778

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +NI+ K  + ++  E +  +I         ++L  +ES+++ + E +   +G L  +
Sbjct: 779 PIAVNISVKQFITDDFIEMVMKIIDAHAIPARCLELELTESLMLADVELAVKKMGELHTL 838

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           G+ L LDDFGT  + L+YL   P + +K + + +T         A+ +S++   + +E  
Sbjct: 839 GVPLALDDFGTGYTSLAYLKRFPVNKIKLDRAFVTDIHHSKGDAALAKSLVAFTREMEFE 898

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +IA+ I  EI  + L  MG  Y Q    + PL      KL   + 
Sbjct: 899 LIAEGIEEEIQGEYLKAMGFRYGQGYLYSRPLPKEEFSKLFTNQM 943



 Score = 41.5 bits (96), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 36/145 (24%), Gaps = 10/145 (6%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++       S  + +             D +   D+    +       ++LG     + G
Sbjct: 260 RYKEKLESLSVELKNSLRTYQDLFNTVADGLVVRDVNGHFLMANQAFLSLLGYREEELIG 319

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +       +D         +  R    +        + +   + +    +S    
Sbjct: 320 THCTKVC------KDKNCERFAEILQGRTIVFKSTH--TTRNGEKIPVEVNSTLVSFKGD 371

Query: 508 DILRYIGIANDITEQKKSLEGILCN 532
                +    DI E+ +  E +   
Sbjct: 372 --TAVLSSVRDIRERLEKEEQLKQL 394


>gi|307153554|ref|YP_003888938.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306983782|gb|ADN15663.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 688

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 130/551 (23%), Positives = 249/551 (45%), Gaps = 28/551 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +  V  S + + + +   +                              H      FR 
Sbjct: 155 LASLVEFSPNPIIEINFAGEITYLNSAAIQKFKTIQKEKIN---------HP----IFRN 201

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +L+         L  E ++     Q       I  +++S            DITE+K + 
Sbjct: 202 LLEQEFHQDGNLLIREIKI----GQEI-FEQHIHYLNDSQ----LIRSYIFDITERKLAE 252

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A+ D LTG+PN+  F  +L T L  +    N    V+ ID+D ++ +ND LG +
Sbjct: 253 EILHYQAYYDTLTGLPNKILFNQQLATALADA-HFKNTLLAVLFIDLDGFQNVNDTLGHS 311

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L S  +R+   L   D  AR +G+ F I++    N  +  + A  +   +  P N
Sbjct: 312 TGDQLLRSFAQRLKTRLCAGDFFARWAGDEFTILVPYLENIEEAKNLAQRIFNILQQPFN 371

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + +  + + ASIG A +      +  ++KNA+ A+Y +K  G N+ + +    +S    R
Sbjct: 372 ISDNLLYLKASIGIAIYPQDGEDAETLVKNADAALYRSKEIGKNNYQFYNPIITSKSCQR 431

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + I+  L  A+E  +  L Y P I +   +++G+EALI+W HP+ G IS ++F+ IAEE 
Sbjct: 432 LQIENLLHQALEKEQFLLHYQPQINIKTGQVLGMEALIRWQHPELGLISPTKFIPIAEET 491

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I  ++L +       W+     PPI I +N++ +          +  ++ +T   
Sbjct: 492 GLIVNIGEWVLRQACLQNQFWQKMGL-PPIRIAVNLSPQQFQQPNFINVVTQILKETDLE 550

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              ++L  +E+ +M N + +  ++   + +G+ +++DDFGT  S L YL  IP +++K +
Sbjct: 551 AHFLELEITETTIMENIDFACQVISYFQTMGVHISMDDFGTGYSSLGYLKQIPLNSIKID 610

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +       + +AI+ +++ + +     +IA+ +  +  +  L ++ C+ +Q    + 
Sbjct: 611 QTFVKDLKEHPQDLAIISAVLAIGRGFNLRVIAEGVETQYQVDLLKKLECEEMQGFKFSK 670

Query: 943 PLGFNSILKLL 953
           PL      K L
Sbjct: 671 PLTPEDAAKFL 681


>gi|120553240|ref|YP_957591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120323089|gb|ABM17404.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 709

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 130/553 (23%), Positives = 256/553 (46%), Gaps = 17/553 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
           +     S + +   D +   +   P  + I G +   + G          H   R+ +R+
Sbjct: 143 ASVFDRSHEAIVITDHLNHIIDVNPAFSRITGYSRQEVLGLNPSILSSGRHS--REYYRS 200

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +  S    +    + E   R  + + +  ++ I  +         Y+   +DIT  K   
Sbjct: 201 MWQSI--EKTDHWRGEVWNRRKNGEEYVELLSISRVHLEEPGKHYYVAAFSDITALKNHA 258

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  D+LTG+PNRQ   +RL +    +         +  +D+D +K IND LG  
Sbjct: 259 KELDRAANYDDLTGLPNRQLLEERLRSAKAHADRQKR-SLAICYLDLDGFKGINDELGHD 317

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+ L  +  R+   L+  D +AR+ G+ F +++  +++          +  S++ P  
Sbjct: 318 FGDEALRMVAERLTRSLRSGDTVARIGGDEFVLLIQGDHSEP----LYQRILTSVSEPFE 373

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--R 704
           L ++E+ +TAS+G   +      +  ++++A+ AMY AK +G N    F    +     R
Sbjct: 374 LADKEVNLTASLGVTLYPEDDTDAEGLVRHADQAMYAAKEKGRNQFHIFDPGQYAFRKER 433

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
                ++  A+EN E  L + P +R+ D +++  EALI+W+HP+ G I+   F+      
Sbjct: 434 RNQLMEISRALENEEFELYFQPQLRMADCQVIAFEALIRWNHPEKGLIAPGAFLPAVANS 493

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-Y 823
            +   +  ++L+     +  WR+      + + INI++  L+D +  + ++  +      
Sbjct: 494 HLEIPLGQWVLKEAIHQMNRWREAG--EALAVSINISAPHLMDRKFVDYLEGYLQSHPEV 551

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SP +I L   ES  + + +R+  +L R + +G+ + LDDFGT  S L+YL  +P D +K 
Sbjct: 552 SPGQITLEVLESTALEDTKRASNVLARCQSLGLQVALDDFGTGFSSLTYLRTLPVDVIKI 611

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +          AI+ S+I +A+  +  ++A+ +        L  MGC+ +Q   +A
Sbjct: 612 DQSFVRNMLTDANDRAIVESVIFLAQRFDHPVLAEGVETMDHAAALRDMGCNLVQGYGIA 671

Query: 942 SPLGFNSILKLLK 954
            P+   ++L+ L+
Sbjct: 672 RPMPSGAVLEWLQ 684



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 2/135 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               D +R +L    S ++    D                G +  ++ G + + +     
Sbjct: 11  ASDIDPKRLALVATASRNMALILDAGGCIEWVNQAFEEHTGYSLSAVRGKLPSQVLAGPD 70

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D D    I            + +     A  + +W+     P+  ++G    ++ I  +
Sbjct: 71  TDPDTVSRIYRHLFRGEA--FEEDILHYTASGEPYWVHTYCTPVDGADGVEPGFVVIQTN 128

Query: 519 ITEQKKSLEGILCNA 533
           I+++K S  G+   A
Sbjct: 129 ISDRKNSERGLRIAA 143


>gi|254491149|ref|ZP_05104330.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010]
 gi|224463662|gb|EEF79930.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010]
          Length = 1410

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/587 (22%), Positives = 253/587 (43%), Gaps = 17/587 (2%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +     +H L   Y         ER  +       + + +   D     V   P  + I 
Sbjct: 705  VASATDKHTLVILYDISERKKAEERLKMSGRVFNQAHEGILITDAKGLLVDVNPAFSEIT 764

Query: 439  GLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G +   + G        +  +     F   + + +  + G  Q E      + Q    ++
Sbjct: 765  GYSREEVIGKNP---SILQSDKHSRVFFQEMWTSLEEK-GHWQGEIWNLKKNGQLFAELL 820

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             I  + +  G+ L Y+G+ +DIT+ K+    +   A  D LT +PNR  F DR    +  
Sbjct: 821  TISTLVDERGETLHYLGLFSDITQSKEQQHALELMAHYDMLTQLPNRTLFADRFHQAIAH 880

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S  + +L   V+ +D+D +K +ND  G  VGD +L+ + +RI   ++  D  +RL G+ F
Sbjct: 881  SKRNHSL-LAVVFLDLDGFKPVNDRYGHDVGDQLLIEVAQRIKASIRQDDTASRLGGDEF 939

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++L   ++          +R +I +P  L E  I+++AS+G   +      +  +L++A
Sbjct: 940  VLLLNDISSVDHCERLINRIRHAIELPYQLDEDTISLSASLGITIYPLDDADADTLLRHA 999

Query: 678  ELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            + AMY AK  G      F        S +    + +  A++  +L L Y P + +   +I
Sbjct: 1000 DQAMYQAKLAGRQRHHIFDALHDQQISQQQNQYKAIQDALKADQLVLHYQPKVNMGTGQI 1059

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            +G+EALI+W+HP+ G +    F+   +   +   +  +++E + + + +W          
Sbjct: 1060 IGVEALIRWNHPEHGLVLPGRFLPAIQGTELEIHVGNWVIEHVMQQVEAWLRDGIEME-- 1117

Query: 796  ILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRK- 853
            I INI+S  L      E +  ++ +      + ++L   ES V+ +  +   ++   R  
Sbjct: 1118 ISINISSHHLQWKGFFEQLDHVLGRHPHVPANLLQLEILESSVLSDINKISSIINTCRNV 1177

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            +GI ++LDDFGT  S L++L ++P D VK + S +           I+  +I + +    
Sbjct: 1178 LGIRISLDDFGTGYSSLTHLRHLPVDVVKIDQSFVRDIIDDPNDYTIIDGVIGLTQAFHH 1237

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             +IA+ +        L  MGC+  Q   +A P+      +      P
Sbjct: 1238 QVIAEGVETIEHGLMLMTMGCELAQGYVIAKPMPAKDFTEWFSNYKP 1284



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 9/179 (5%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
                    Q A +  +   V+++       +       + +     R    +  S    
Sbjct: 557 LGLTVTSGPQLATLIKISSAVMVLFLLFAYWIYRLRKSGRALAQSETRLREVLNASPVPQ 616

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRR 476
              + V           T  G     +   + +W          R+  +      +    
Sbjct: 617 GILNEVGQVTYLNQAFITTFGYTLADI-PTVNDWWQKAFPEKTHRETIQAEWQLHIEDSL 675

Query: 477 GRLQ----YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
            R       E  V   +     +I     ++++       + I  DI+E+KK+ E +  
Sbjct: 676 NRSDTLKPVESDVVCKNGDKKTVICNATHVASATDK--HTLVILYDISERKKAEERLKM 732


>gi|52142967|ref|YP_083862.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51976436|gb|AAU17986.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 912

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 155/754 (20%), Positives = 302/754 (40%), Gaps = 20/754 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 165 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNTKSK----LFIFILVLTGFAITD 220

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P   +S     + +        +I
Sbjct: 221 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPRSVSSKRNYFIINPTFGKKLLVI 279

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + + +   +    L   L +    + 
Sbjct: 280 FPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIRHIIVRMQNKDLTETLKVFNNQLE 339

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 340 QKVFQRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQSGSILLGKDSA 399

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+      L   +G R      + RV+  + +  +         
Sbjct: 400 ALIGKEC--FSIFLDEDKPELEAALK--MGKRCSSSSLQLRVKHNNEKDIYFWYVTIVPI 455

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT+ K+  + I   AF D +T I NR  F   L   ++ +     
Sbjct: 456 MIEGQTFGSYVMVKDITKMKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG 515

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ ID++++K IND +G ++GD VL  + +R    L     LAR+ G+ F +++ +
Sbjct: 516 -EFGLLYIDLNRFKTINDTMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVHN 574

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                ++ D    + +       + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 575 HT-EQQLLDLCENLFRITEKTFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 633

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +     +++G EAL
Sbjct: 634 AKEKGNNAVCMYDETLSQKITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEAL 693

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + + IN++
Sbjct: 694 IRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKMGINLS 752

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +       + + ++I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 753 AIEFEQKGFVQTVISIIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSID 812

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +IA+ + 
Sbjct: 813 DFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVE 872

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +  L +  C  IQ  + + P    + +  L
Sbjct: 873 TKEQLTVLQQNACYLIQGYYYSKPANEAAFINFL 906


>gi|94263701|ref|ZP_01287509.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455900|gb|EAT06059.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 247/584 (42%), Gaps = 14/584 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++  L          SD    +  +  + + V         +        I G     +
Sbjct: 257 TLRRALRYAIIRHRRDSDMRLAAAVIKHTREGVTITRSDGTIIEVNDAFCRITGYRREEV 316

Query: 446 HGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   R      H  DR+ +  +  +      G    E   +  + + +  ++ I  + +
Sbjct: 317 IGQNPRLLQSGRH--DREFYAEMWRAL--GEEGFWSGEIWNKNREGRIYPQLLTISAVPD 372

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G    Y+ I  DI++ K+  + +   A  D LTG+PNR    DRL   +  +      
Sbjct: 373 GTGKPAHYVAIFGDISKIKEQQQRLELIAHYDTLTGLPNRALLTDRLHHAMAQTFRRQ-T 431

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  V  +D+D +K+IND  G  VGD +L +L  R+   ++  D L RL G+ F  I    
Sbjct: 432 RLAVAYLDLDGFKEINDTHGHDVGDFLLRTLAERMQHNMRESDTLGRLGGDEFIAIFQDL 491

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYH 683
            +          +  + A+P++  E  + V+AS+G   +  S+   + ++L+ A+ AMY 
Sbjct: 492 ADDETCLPLLQRLLNAAALPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQ 551

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F             +   +  A+++ EL L Y P + +    +VGLEAL
Sbjct: 552 AKQAGKNRYHLFDTVQEVAMRGHHALLGRIKSALDDQELLLYYQPKVNMRSGVVVGLEAL 611

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G +    F+   E+  +   +  ++L  +   + +WR    +  + + +NI+
Sbjct: 612 IRWQHPELGLMLPGYFLPAIEDHPLAVTVGDWVLATVLAQLAAWRRAGIL--LPVSVNIS 669

Query: 802 SKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ L   +    +Q  +++       +++L   ES  + + ++   ++ + R +G+   L
Sbjct: 670 ARQLQQGDFVAKLQQQLARQPEVPADQLELEVVESSALDDIDQVSGIMAQCRAMGVGFAL 729

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P  T+K + S +         +AIL  ++ +A+  +   +A+ +
Sbjct: 730 DDFGTGYSSLTYLKRLPARTLKIDRSFVLDMLKDPDDLAILEGVLGLARAFKRQTVAEGV 789

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
                 + L ++GC   Q    A P+    +   +       + 
Sbjct: 790 ESAAHAESLLKLGCKVAQGYWFAKPMPMAEVAAWVAAYETKSRR 833


>gi|269836741|ref|YP_003318969.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786004|gb|ACZ38147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphaerobacter thermophilus DSM 20745]
          Length = 942

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 150/578 (25%), Positives = 269/578 (46%), Gaps = 10/578 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            L     +  +          V  S D++    +       TP +  +LG  S  + G  
Sbjct: 356 ALNRLASTDDLRRREASFRALVQHSSDMLLIVGLDSRIRYQTPAVERLLGYRSAELVG-- 413

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           R  +  +H +D       +D     +R     E+R R AD  +         +   +  +
Sbjct: 414 RRLVELVHPDDAQTVAAFIDRVAATQRRLGPAEWRFRCADGSWLHAETVATNLL-RDAHV 472

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +    D+TE+K++       A+ D LT +PNR  F+DRL + L       +    V+
Sbjct: 473 GGIVLTTRDVTERKRAEAEWRHRAYHDPLTNLPNRAFFMDRLQSSLAAGQRRSDA-VAVL 531

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K++ND LG   GD +LV L  R+   L+  D++ARL G+ F I+L+       
Sbjct: 532 FVDLDGFKEVNDTLGHEAGDRLLVELADRLRRALREQDVIARLGGDEFAIVLVDVVEPND 591

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +   +  P+ L  + I + ASIG A  T  +     +L+ A+ A+Y AK  G 
Sbjct: 592 AVQTAERILDRLREPVLLDGQPIPIRASIGIALGTPGRDRPDTVLRQADSALYAAKRAGK 651

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    +     R       +  +L  A+E+  L L Y P++ L+D  I  +EAL++WDHP
Sbjct: 652 SCYALYDEQLARPALEQGELARELRAALESGRLTLYYQPLVVLLDGRIGEVEALLRWDHP 711

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLL 806
           + G +  S+F+ +AEE  +I  I  + LE   R + SW+ +     P+ + +N++++ L 
Sbjct: 712 QRGLLLPSQFLDLAEETGLILPIGYWALEEACRQVRSWQKKRPSTLPLTLAVNLSARQLR 771

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +  +   +  ++++T + P  +++  SE+VV+  PE +   L  LR +G+ + +DDFG  
Sbjct: 772 EPGVAAAIGRVLARTDFDPRHLRVEVSEAVVLAEPE-AVKTLQALRALGVRIAIDDFGAT 830

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + L+ L  +P D +K +G  +    E     A++R  +  AK    TIIA+ +      
Sbjct: 831 AAALTPLTQLPVDALKIDGVWVATLGEGARESALVRGAVAFAKAKGLTIIAEGVETAAQA 890

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           ++L  +G D  Q  + + PL  ++I +LL+        
Sbjct: 891 RQLRELGFDRGQGYYFSGPLTGDAIYRLLRGETCGASR 928


>gi|188580154|ref|YP_001923599.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179343652|gb|ACB79064.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 685

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 137/598 (22%), Positives = 256/598 (42%), Gaps = 23/598 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
             +       TV   + A       +     R + A+         +D     +      
Sbjct: 101 AAMCAETTALTVAADIAALKRSEAVLSERIARLNAALDTLSLGFLLYDRDHRLLVVNRRY 160

Query: 435 ATILGLASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRA-AD 489
             I  L SG++      R  L        +  R+  +         G      +++   D
Sbjct: 161 HEIYRLPSGAVTPGMSAREVLRRNVQAGSEAERSEAEQLAEIGALMGSGAAPAQIQHLPD 220

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            +   +   I+P+         ++ +  + TE+  +   I   A  D +T +PNR    +
Sbjct: 221 GRVVAVE--IQPIDGG-----GFVAVYEEATERWNAEARIAHMARHDAVTDLPNRVLLRE 273

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R+   +  +  +      ++ +D+D +K++ND LG AVGD++L ++  R+   ++  D +
Sbjct: 274 RIEGAITQARRETG--FAMLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACVREVDTV 331

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F II  +       A  A  +   ++ P  L    + V  SIG A      + 
Sbjct: 332 ARLGGDEFAIIQAAVTTPADAATLAQRILDVVSAPYALTHHSVIVGVSIGIALAPGDGLE 391

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727
           +  +++ A++A+Y AK  G      F          R  ++ DL  A E     L Y PI
Sbjct: 392 AERLMQCADVALYRAKGDGRGVFRFFEAEMDARLQARRSLELDLRAAFEAEAFDLHYQPI 451

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L  E I G EAL++W HP  G +S +EF+ +AEE+ +I  +  ++L R  R+   W +
Sbjct: 452 YDLSAERICGFEALLRWTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREAAGWPE 511

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +N+++     + L   ++A ++++     R++L  +ESV++ N   +  +
Sbjct: 512 -----GLKVAVNVSAAQFTSSALIGTVKAALAESGLPARRLELEITESVLLVNGSATVAI 566

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905
           L  LR +G  + +DDFGT  S LSYL   PFD +K + S     T  +    I+R+++ +
Sbjct: 567 LHGLRNLGTRIAMDDFGTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSL 626

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           A ++  T  A+ +     +  L   GCD +Q    + P+   ++  LL+      +  
Sbjct: 627 ASSLGMTTTAEGVETPEQLAWLREEGCDEVQGYLFSPPVPACALPALLETWNGRTRRA 684


>gi|288942799|ref|YP_003445039.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Allochromatium vinosum DSM 180]
 gi|288898171|gb|ADC64007.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Allochromatium vinosum DSM 180]
          Length = 1030

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 168/798 (21%), Positives = 308/798 (38%), Gaps = 45/798 (5%)

Query: 202  LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
            L +  T           +         L       G +  LV + +   L   A + +  
Sbjct: 229  LILINTFLAASAGGLTAMGYSYAVHRQLIVTEPLNGIIGGLVGITASCHLQEPAFAALIG 288

Query: 262  SSSLIIFLFMYLHWNRW-------HAKVGYITFSGIACIAILFCMSF---YYPMVTASIA 311
            + + ++         R                         LF             A + 
Sbjct: 289  AVAGLVVSLGTATLERLRIDDAVGAIPAHLFAGIWGTLAVALFAPVTDFELTGGRLAQLE 348

Query: 312  RITLASIVLYYTYFIIYHGMKGYERAVLLIPA-----WILIFIWFIGLWMAITKRLDNDI 366
              TL  + +    F +          +  +        + + +   G    I   L    
Sbjct: 349  IQTLGILAVGAYAFGVSLAALWLLDRLYRLRVDPESERLGLNVAEHGASTEILDLLTEMD 408

Query: 367  IQPALVGGLVLIVILIGFTVIQHVLA--------------TGYFSQGIFSDGERQSLAVL 412
             Q         +       V Q                       + + +   R+S  + 
Sbjct: 409  TQRRHGDFSRRVFAEPHTEVGQIARQYNHVLQRVSEEIHKREAILRDLTASETRKSAILD 468

Query: 413  GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
               D +   D     +   P  A  LG +  ++ G     +  I    R  +   L    
Sbjct: 469  AVLDCILTIDHEGHLLEINPAAARTLGCSRRAVLGRPLADI-LIPDEARPAYDEALAQGF 527

Query: 473  GYRRGRLQYEFR----VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                GR     R    ++    +     + I  + +  G    +   A DIT Q++    
Sbjct: 528  VTE-GRFVVNQRSHTILKRISGETFPAELTIARVKS--GPYPEFNFHARDITRQREVQRR 584

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A  D LTG+ NRQ F   L+  L      +  +  V+ +D+D++K IND LG A G
Sbjct: 585  LHQLAHYDGLTGLANRQFFRQNLSIHL---MGPEPAQIAVLFLDLDRFKTINDTLGHAAG 641

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D +L ++  R+  +L+  D++AR  G+ F + L+   +   +   A  +   +A P  L 
Sbjct: 642  DQLLRTVAERLRSVLRSEDLVARWGGDEFVVALLGVQDRDAVMHKAADIIARLAEPHPLA 701

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI- 707
             R I V  SIG A +     ++  +++NA+LA+Y AK  G  H + F           + 
Sbjct: 702  GRSIRVPTSIGAALYPEGGTSADLLIRNADLALYRAKSNGRGHCQLFDPVLASEISERLE 761

Query: 708  -KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             + DL  A++  EL L Y P + +    IVGLEAL++W HP  G +S + F+ I EEL +
Sbjct: 762  FENDLRDALDRGELELFYQPQVEVGSGRIVGLEALLRWRHPGKGMVSPTVFVPILEELGL 821

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I+ +  ++L    R    WR++   PP  I +N++ +  L     E ++ ++++   + +
Sbjct: 822  IELVGEWVLRTACRQHRVWRERGLSPP-RIAVNVSGRQFLRLGFAETVERILTEEGTAVT 880

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +E+V+  + +     L RL+++G+ + LDDFGT  S +SYL   P DT+K + +
Sbjct: 881  AVELEITETVLAHDTDVCIETLRRLKRLGLEIALDDFGTGYSSMSYLKRFPVDTLKIDRA 940

Query: 887  LMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +       +  AI  +I+ +A+ +    +A+ +     ++ L R GC + Q      P+
Sbjct: 941  FVAECDVNAEDAAICTAILSLARGLGLKTLAEGVETPGQLEFLRREGCQFYQGFFFRRPM 1000

Query: 945  GFNSILKLLKERFPLVKN 962
                + +LL E   L+ +
Sbjct: 1001 PVEEVERLLAEDVSLISS 1018


>gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 705

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 142/585 (24%), Positives = 263/585 (44%), Gaps = 12/585 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKNHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDALTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + +++D +K IN+  G  +GD+VL+ ++ R+ E L   D L R+ G
Sbjct: 297 VTQAAIS-RWKLAALTVNLDGFKNINETWGHVLGDEVLLEVSHRLSECLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+  +           +R ++ +P  L  + I +TASIG A +      S E++
Sbjct: 356 DQFALILMLRDGQADTRQTLDRIRNALRVPFQLEGQSIVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K+A  AM  AK  G +    +          R+ ++  L  AV+     +VY P + L +
Sbjct: 416 KHAYTAMNSAKKIGPDTYRFYTAQMNADVSARLDLEAALRDAVQKQAFEIVYQPKLNLAE 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            ++ GLEAL++W  P    IS + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 NQVCGLEALLRWPRPGQSGISPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHKVAPQWLEVELTESSLMENTSHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
             G+S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     +  L    CD IQ   ++ PL    +   L+ 
Sbjct: 655 LKVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLGELEVFLRS 699


>gi|325982688|ref|YP_004295090.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
 gi|325532207|gb|ADZ26928.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
          Length = 891

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 133/437 (30%), Positives = 235/437 (53%), Gaps = 6/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K++ + I+  A  D LTG+PNR    DR+  +L         +  V+ ID+D +K IN
Sbjct: 440 EGKEAEKRIIEMATHDALTGLPNRYLLRDRIEQVLVHDTRLQR-QMAVLFIDLDHFKTIN 498

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L ++  R+   ++  D +AR  G+ F ++L S   SL  A  A  +  S
Sbjct: 499 DSLGHEIGDLLLKAVADRLKSCVRNEDTVARQGGDEFIVVLNSIAESLDAAKVAQKILDS 558

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            A+P ++ + E+ +  SIG A +    + +  +LKN+++AMYHAK  G N+ + F     
Sbjct: 559 FALPFHIHKNELHIDGSIGIAVFPDDGVNAETLLKNSDVAMYHAKKNGRNNYQFFTDELN 618

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R ++  DL  A+E +EL L Y P++ +    + G+EAL++W HP+   I+  +F+
Sbjct: 619 KSAYERHILGLDLRYALERNELLLYYQPVMDMPSHNLYGVEALLRWRHPEQKLITPDKFI 678

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  +++  +   I +W++Q    P  + IN++++   D +L + +  ++
Sbjct: 679 NLAEETGLIIPIGEWVIRTVCLQIKAWQEQGFYVP-RVAINLSARQFRDKDLIKNISRIL 737

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+T      I L  +ES+++ N E+    L RL  +G+ +++DDFGT  S LSYL   P 
Sbjct: 738 SETGVKAKHIALEITESMLIDNIEKVVETLNRLDAMGLHISIDDFGTGYSSLSYLKQFPI 797

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K + S +      +    I+ +II MA ++E  +IA+ I  E  +  L    C++ Q
Sbjct: 798 HTLKIDRSFVRDLVTDKNDRTIVAAIIAMAHSLEMEVIAEGIEIEEQLDFLVTQKCNHYQ 857

Query: 937 DSHVASPLGFNSILKLL 953
             + + P+  + I  +L
Sbjct: 858 GYYFSKPVTVSEIELML 874


>gi|153007631|ref|YP_001368846.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151559519|gb|ABS13017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ochrobactrum anthropi ATCC 49188]
          Length = 707

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 141/580 (24%), Positives = 244/580 (42%), Gaps = 18/580 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTPDIATILGLA 441
             ++Q        ++            V      V+  D+      V      +   G  
Sbjct: 123 LAIVQDRTELAEANRQANHAQTLLDSLVNNLPLGVFVKDMHDDGRYVLYNQAASAASGQP 182

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G     L               D     RRG L  E ++   D     M I    
Sbjct: 183 VDEAIGSTDLDLF---PEREATVIIQQDRTAMRRRGVLNVERKIERKDGTSRTMRIIKCS 239

Query: 502 MSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           +    G +    IG+  DITE+++  E +   A  D+LTG+PNR  F   + ++L     
Sbjct: 240 IPPVEGNEPRYLIGLVEDITERREIEERMAHIAMHDSLTGLPNRAYFAHHVESLLK--KG 297

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D+    +  +DID +K IND +G   GD +L  + RR+ ++    + +ARL G+ F I+
Sbjct: 298 GDSEPFALFYLDIDHFKNINDNIGHQAGDQLLQEVARRLKQITTSDEFIARLGGDEFAIV 357

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             S     +IA FA  +  +   P  L+     V  S+G A           +++NA+LA
Sbjct: 358 YRSGT-LAQIAMFADRILSAFQDPFELVRNSEFVACSMGIAQAPLHGDNPDVLMRNADLA 416

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y +K  G      ++ S   +      +  +L  A+ + +  L Y PI  L   +I G 
Sbjct: 417 LYASKSGGRRTFRFYQHSLRLAAEKRYVMTGELRQALLDEQFELHYQPIFNLESGKISGF 476

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP  G +S +EF+ +AEE  +I  I  ++L    R+ + W +      I + +
Sbjct: 477 EALIRWRHPDRGMVSPAEFIPLAEETGLIGPIGDWVLRTACREAVLWPE-----DIKVSV 531

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++        L   +   +     SP R++L  +ESV + N + +  LL  LR++G+ +
Sbjct: 532 NLSPVQFSQTTLLHSVTDALEAARLSPDRLELEITESVFLSNSKNNIELLFELRRLGVRI 591

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +         A+
Sbjct: 592 AMDDFGTGYSSLSYLRSFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGAGFNIVTTAE 651

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +     ++ L       +Q      P+    +   ++ R
Sbjct: 652 GVETAQQLERLKTERFGEVQGFLTGRPMPAGDVHSFIQNR 691


>gi|95929175|ref|ZP_01311919.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134673|gb|EAT16328.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 709

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 237/501 (47%), Gaps = 16/501 (3%)

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-- 527
           +    R  ++Q  +  +  + +   +      + N   D+        DI+E  +  E  
Sbjct: 209 ALAKNRATKVQQNY--QDENGENVSVEKTATLLRNRQDDVTGIFLTCRDISENMRQKEDI 266

Query: 528 -----GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 +      D LTG+P R  F D L + +     ++     ++ +D+D++K IND 
Sbjct: 267 AYKEMQLEQILHYDTLTGLPQRDFFFDLLHSHMVGCQKNNRT-LALLYLDLDRFKNINDT 325

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD VL  + +R+   ++  D L+R+SG+ F I L   +N  ++   A      I+
Sbjct: 326 LGHTVGDQVLQEVAQRLQNNIRITDNLSRMSGDEFLITLDPADNLSEVTQLAQKFLSVIS 385

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
           +P+ +      +TASIG + +     +  ++L  A+ AMY AK  G +    +   ++  
Sbjct: 386 VPMKIEHHRFHLTASIGISLFPGDATSPEKLLSCADSAMYRAKESGRDAFRFYKPHMNEK 445

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + ++ +L LA+E  +L L Y P   L   ++VG+EAL++W+HP+ G I   EF+  
Sbjct: 446 AQGLLWLETELRLAIEQEQLELHYQPQYDLNTGQLVGMEALVRWNHPEKGMIPPGEFIPQ 505

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L    R I +W     + PI + +NI++      +L + +  L+  
Sbjct: 506 AEETSLIIPLGEWVLNTACRQIAAWHAM-GISPIRMAVNISAVQFYRIDLAQMVAKLLDH 564

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                + ++L  +ESV+M + E +   + +L  +GI L++DDFGT  S LSYL   P  T
Sbjct: 565 YGLPATLLELEITESVLMDDVEAAAETMNKLTAMGIQLSIDDFGTGYSSLSYLKRFPIST 624

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      E+  AI  SII +A ++   ++A+ +     +  L R  C Y Q  
Sbjct: 625 LKIDRSFINDVTINEQDAAIALSIISLAGHMGIEVLAEGVETVEQLSFLQRHACQYGQGY 684

Query: 939 HVASPLGFNSILKLLK-ERFP 958
               PL    I + LK    P
Sbjct: 685 LFNRPLPAKDIERQLKTAHLP 705


>gi|258405308|ref|YP_003198050.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
 gi|257797535|gb|ACV68472.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
          Length = 738

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/571 (24%), Positives = 270/571 (47%), Gaps = 24/571 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             E  S  +  S D ++  D              +L   +G + G   ++   I+  D  
Sbjct: 164 SKEISSFIIENSPDFIYLLDDSGFFTYVNRKAYELLNYHNGELLG--LHYSSIIYEGDLH 221

Query: 463 NFRTILDSFVGYRRGRLQYEFRVR--------AADNQFHWMIIRIRPMSNSN----GDIL 510
             + + +      R     E R++             F +  +  R M   +     + +
Sbjct: 222 KAQYVFNERRTGERATQGVEIRLKKFSENTLDNETPHFIYTELFARGMYRDDSVRRQNFV 281

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              G+  D+TE+ +S + I  + + D+LT +PNR  F DRL   L  +  +   + +++ 
Sbjct: 282 GTYGVIRDLTERIRSEDLIRFHLYHDSLTSLPNRTLFNDRLHMALLHAKRNKK-KFSLLF 340

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +KKIND LG   GD+VL ++ + + + ++  D ++R+ G+ F I++ + +   + 
Sbjct: 341 LDLDNFKKINDNLGHQSGDEVLQNVAKILKKSVRESDTISRIGGDEFVILIENLDKLSET 400

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +  +   P+   ++E+ +TASIG A +     T  ++++ A++AMY  K +  N
Sbjct: 401 DKICYKILNAFKEPMYCQDQEVRITASIGIAVYPEHGQTKEQLMRRADMAMYKIKSKTQN 460

Query: 691 HVESFRVSSFRSDR-----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
               +      S       + ++ DL +A+EN+EL + Y P +   +E IVG EAL++W 
Sbjct: 461 SFCYYSNKDNGSCYKNLPSIELENDLYMAIENNELAMFYQPQVDCENETIVGFEALMRWF 520

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HPK+G +S S F+ IAE+  +I  +  + L++  +D   + ++    P+    NI++K +
Sbjct: 521 HPKFGLVSPSVFIAIAEKNGLINELGRWGLQQTCKD-ALYFEEKCAEPMKFSFNISAKQI 579

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +   +   ++++      + I+L  +ES VM N       L  LRK  IS+ +DDFG+
Sbjct: 580 HQSNFIDETLSIVNSFDLKENSIELEITESSVMHNLNAVSYFLMELRKSNISIAIDDFGS 639

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +  DT+K + S ++     +K+  I  +I  MA ++   ++ + +     
Sbjct: 640 GFSSLSYLQNLFVDTLKLDRSFISNADLNKKKRTIFTAIQSMAHSLNVDLVIEGVENFSQ 699

Query: 924 IKELTRMGCD-YIQDSHVASPLGFNSILKLL 953
            + L  +G D  IQ  + + P+    + K L
Sbjct: 700 KQYLKDLGLDSIIQGYYYSKPMSLEDLEKSL 730


>gi|222110676|ref|YP_002552940.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax ebreus TPSY]
 gi|221730120|gb|ACM32940.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax ebreus TPSY]
          Length = 740

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 130/617 (21%), Positives = 253/617 (41%), Gaps = 50/617 (8%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +I  +         + +    + +    +   +      R           ILG   
Sbjct: 129 SIWIIDDIDEQKRAQAQLQAALWEKQVLFDSAMVGIVFLQ-ERRMTRCNRHFEQILGYGP 187

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G + G           +  +         V  +    + +  +R  D +     +R + +
Sbjct: 188 GELAGSSSRRWYLSDEDWHEAGVRCYAPLVQGQA--FEGQMVLRTRDGRAIECEVRSKAV 245

Query: 503 SNSNGDILRYIGIANDITEQ---------------------------------------K 523
            + +      I I  D++E+                                       +
Sbjct: 246 -DPSNVAQGSIWIVMDVSERLRIQRQLAGMHGELEQQVRDRTRELQETVGNLHREIQDRQ 304

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A  D LT +PNR    +R    +  +         VM +D+D +K +ND L
Sbjct: 305 RDQERIYWMAHYDALTELPNRVLLAERGQDAIRHAQES-GAPLAVMFLDLDNFKHVNDSL 363

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV + +R+   ++  D +ARL G+ F ++L    N+   A  A  M+++   
Sbjct: 364 GHRIGDALLVEIAQRLRTTVRQRDTVARLGGDEFVLLLPG-ANAQGAARVAAKMQEAALQ 422

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P+++   E+++  S+G A +         ++++A+ AMY AK  G N    F  +     
Sbjct: 423 PVHIQHHELSLALSMGIALFPEHGSDFETLIQSADTAMYRAKADGRNSFRFFTPTMQAQS 482

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +   L  A+E ++L L Y P + +    + G+EAL++W HP+ G +S +EF+ +A
Sbjct: 483 ARALQLTNALRRALERNQLSLHYQPQVSIATGRVCGVEALLRWHHPELGAVSPAEFIPVA 542

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  I  ++L      + +W  Q   P + + +N+++      +L E +  L+++ 
Sbjct: 543 EDTGQILPIGEWVLRTALAQLRTWHSQGL-PALTMAVNLSAVQFRQPQLLELVDRLLAEY 601

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +E+V + +P  +   + +L   G+ L++DDFGT  S LS+L       +
Sbjct: 602 GVQPHLLELELTENVAVADPHAAIATMDQLHAKGVRLSMDDFGTGYSSLSHLKRFQIYRL 661

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +          AI+ +II MA+ +     A+ +     +  L   GCD  Q  +
Sbjct: 662 KIDQSFVRDLDHDGNDRAIVSAIIRMAQALGMRTTAEGVETAHQLTFLREQGCDEAQGFY 721

Query: 940 VASPLGFNSILKLLKER 956
            + PLG   + + L +R
Sbjct: 722 FSRPLGAPHLQQYLLQR 738



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 16/148 (10%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIH 457
            +      Q   +  +G  +      R  V      A I GL       G        +H
Sbjct: 19  AMQRVLREQQTLLDSAGVGIVFIR-NRALVRCNQRCAEIFGLPSPEDAIGRSS---EALH 74

Query: 458 IND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +    R+  R    +    +    + E +++  D Q  W  +  R ++  +      I 
Sbjct: 75  PSRGAFRELGRAAYPTLARGQA--YRTERQLKRCDGQLFWAHLTGRLINPRDSR-EGSIW 131

Query: 515 IANDITEQKKSLEG-----ILCNAFQDN 537
           I +DI EQK++               D+
Sbjct: 132 IIDDIDEQKRAQAQLQAALWEKQVLFDS 159


>gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 705

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/583 (23%), Positives = 260/583 (44%), Gaps = 12/583 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + ++ID +K IN+  G  +GD+VL+ ++RR+   L   D L R+ G
Sbjct: 297 MTQAAIS-RWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +R ++  P  +  + + +TASIG A +      S E++
Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  A+  G ++   +          R+ ++  L  AV N    +VY P + L +
Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
              +S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +IA+ +     +  L    CD IQ   ++ PL    +   L
Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFL 697


>gi|296158392|ref|ZP_06841223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. Ch1-1]
 gi|295891336|gb|EFG71123.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia sp. Ch1-1]
          Length = 769

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 142/569 (24%), Positives = 255/569 (44%), Gaps = 13/569 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +Q +    E   L V    + +         +   P    IL      +   I   +  
Sbjct: 192 MAQRLAHSEEHHRLVVDHLIEGIVVQSRAGVVLACNPSAQRILRATPQIVGRSIHTVMVR 251

Query: 456 IHINDRDNFRTILD---SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILR 511
            +  D       +      +   +  L     V        W+   + P+      +   
Sbjct: 252 AYHEDGSVVTEAVRPTTQVLATGKPMLGVTIGVELIGGDIVWITENVVPIIKPGESEPSS 311

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---SATDDNLRPTV 568
            +    DI   +++   +   A +D+LTG+ NR    +RL  +  L   S   +     V
Sbjct: 312 VLISFTDIGPVREAQRQLKFLATRDSLTGLYNRAYLTERLRDLFSLDTSSGMGELASVAV 371

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D +KK+ND  G   GD +L S+  R+   +   D LAR+ G+ F I++ +  N+ 
Sbjct: 372 LFVDLDGFKKVNDTAGHEAGDSLLCSVAERLAACISTEDTLARVGGDEFVIVVSAYENTG 431

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  +   IA+P  + + E  + ASIG + +       + +L+NA+ AMYHAK RG
Sbjct: 432 HLIGLAQRILDMIAVPFAVADNEYYLGASIGISRFPEDGQDVATLLRNADSAMYHAKQRG 491

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N+ + F     R  +    I++ L  A+  +EL LVY PI+   D   +G EAL++W +
Sbjct: 492 RNNFQFFTAELNRQLQRRFTIEQSLRRALAANELSLVYQPIVDSHDGRTIGAEALLRWYN 551

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            + GN+S  EF+ +AE+  +I  I  F+L R    +  WR     P + + +N++ +   
Sbjct: 552 SELGNVSPVEFIPVAEDAGLIVEIGNFVLARACEQVAQWRRTLA-PELIVAVNLSPRQFN 610

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E +Q  + +T   P+ ++L  +E ++M + E    +L  L  +G+ +++DDFGT 
Sbjct: 611 D-GLVERIQRCLIQTGLEPAALELEITERLLMSDSETVLPMLSALNAMGVRISVDDFGTG 669

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   P   +K + S + G       IAI ++++ MA ++   + A+ +      
Sbjct: 670 YSSLSYLKRFPLHNLKIDRSFVVGLPDHRDSIAITQAVVAMAHSLGMNVTAEGVETAEQA 729

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
             L  + CD  Q    + P+G ++  + L
Sbjct: 730 AFLRAIDCDKQQGYFYSRPVGASAYARSL 758


>gi|218528940|ref|YP_002419756.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218521243|gb|ACK81828.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 714

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 148/692 (21%), Positives = 286/692 (41%), Gaps = 33/692 (4%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
              +          +A     +    +      R+T+          ++   ++   R++
Sbjct: 28  GRHLLRTGSGLCLTVAGFSATALMASLSAEPTLRLTVVGGATILALVLVCLILRRLARSL 87

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------TVIQHVLA 392
                            +A+     +   +  L  G  L+             ++  + A
Sbjct: 88  TRAMQAAESIAPASAPAVALRTLPASASGEAPLPDGRRLLADRPRLGDGADPAILTDIAA 147

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449
                  +     R + A+         +D     +        I  L  G++      +
Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505
                 + + D+ +     D  +      +  +    +++  AD +   +   I+P++  
Sbjct: 208 EVLRSNVGVGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                 ++ I  + TE+  +   I   A  D +T +PNR    +R+   +  +  +    
Sbjct: 264 -----GFVAIYEEATERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K++ND LG AVGD++L ++  R+   L+  D +ARL G+ F II  S  
Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A  A  +   ++ P  L    + V  SIG A      +    +++ A++A+Y AK
Sbjct: 377 TPADAATLAQRILDVVSAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G      F  ++ +    R  ++ DL  A E     L Y PI  L +E I G EAL++
Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +S +EF+ +AEE+ +I  +  ++L R  R+  +W D      + + +N+++ 
Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASNWPD-----GLKVAVNVSAA 551

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +QA ++++  S  R++L  +ESV++ N   +  +L  LR +G  + +DDF
Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   PFD +K + S     T  +    I+R+++ +A ++  T  A+ +   
Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  L   GCD +Q    + P+  + +  LL
Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALL 703


>gi|103485959|ref|YP_615520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98976036|gb|ABF52187.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 878

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 165/753 (21%), Positives = 314/753 (41%), Gaps = 46/753 (6%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
           F+++L+ + +    +           S++  +  +         +     SG+ C A L 
Sbjct: 27  FVAQLLRVATLWHYVLIGRLLAFAVFSVLPGVAGFFD----QPSLWLTMASGLMCDAALT 82

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGM---------------KGYERAVLLIP 342
            M         ++A       +L      +                   + ++    +  
Sbjct: 83  VMGQAMRRPRPALAARARQVAMLSAALVALGTLFNAAAMFAAIAMPDGGRHFDAFTAIQI 142

Query: 343 AWILI----------FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
             +L+            +     +A    L       AL G + L ++++          
Sbjct: 143 GSLLVAASAVSIVRPLFFSFSGAVAFGGALGVASWPFALAGAVFLALLIVMMREDVRHQR 202

Query: 393 TGYFSQGIFSDGERQSLAV-----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
               +       ++++L +            W+ D     V  +P +A  LG     + G
Sbjct: 203 RATAAARRAISEQQRALNLMRDFERAGRGWFWETDRDGQLVYISPTVAARLGRPLAELIG 262

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +    I + ++    L   +  R    +   +  A   +  W  I   P+SN+ G
Sbjct: 263 RPFTDIIRKRIGNDESEERTLGFSLSSRTPFKELTVQAAAP-GEERWWSISGHPISNALG 321

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               + G   D+T+QK+S   I   A  D LTG+ NR+   D L   L            
Sbjct: 322 HFQGFRGSGTDLTDQKRSEREINQLARYDTLTGLANRRHITDLLERALRTHIGQPQP-CA 380

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++D+D++K +ND LG  VGD +L  +  R+ +++     + RL G+ F I+L   N+ 
Sbjct: 381 LLLMDLDRFKAVNDTLGHPVGDQLLQQVAGRLTQIVGDKGQVGRLGGDEFQIVLPQLNHP 440

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            KIA  A A+  S+A P  +   ++ + +SIG A      +++S +++NA+LA+Y AK  
Sbjct: 441 EKIAGIANAIILSLAKPFAIEGEQVRIGSSIGIAVSDGEGVSASALVRNADLALYAAKDA 500

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      +   + +  S+R  I++ L  A+   EL L+Y PI+ +  E I G EALI+W+
Sbjct: 501 GRGVYRFYADAMHNQASERKAIEDALRDALAKDELRLLYQPIVDVATERISGFEALIRWN 560

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           H   G IS  +F+ IAEE  +I  I  +++      I +           + +N++ +  
Sbjct: 561 HATAGTISPEKFIPIAEESNLIVPIGEWIIRTACAAIATL-----GSGYRVAVNVSPRQF 615

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +  L   + + +S     P +++L  +E V +     +  +  +L++ G+ L LDDFGT
Sbjct: 616 ANEALPATILSAVSGAGIRPEQLELEITEGVFLDESAENLAMFRKLKRTGVRLALDDFGT 675

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEI 922
             S L YL   PFD +K + S + G+ +K     AI+ SI+ +A  ++    A+ +    
Sbjct: 676 GYSALGYLKKAPFDKIKIDQSFVLGAADKSSMNAAIIASIVGLASALDMETTAEGVETHD 735

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           D+  +  +GC ++Q      P+    ++ LL+ 
Sbjct: 736 DLALVRSLGCSHVQGYIYGQPMQLAEVVGLLRA 768


>gi|163941433|ref|YP_001646317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163863630|gb|ABY44689.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 906

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 158/725 (21%), Positives = 316/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     + ++       I ++       
Sbjct: 191 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 250

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 251 EDDNSHKNYFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  R+ ND +   L          +   V        + S+ +    ++        
Sbjct: 311 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 365 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T  +    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + +S+  P  + E ++T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIHEHKLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG + +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ I+EE   I  I  
Sbjct: 659 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPISEETLQIIPIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+       + + + ++ T    S + L  
Sbjct: 719 WTLQQACEQMKRWHA-LGYSQLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 838 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYANAFT 897

Query: 951 KLLKE 955
           KLL+ 
Sbjct: 898 KLLEN 902


>gi|218888047|ref|YP_002437368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759001|gb|ACL09900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1251

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 232/440 (52%), Gaps = 5/440 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K+  E +   A  D LTG+PNR   LDR+   +     +D+ R  V+++D+D++K IN
Sbjct: 761  ERKQGEEMLTHLALHDPLTGLPNRALLLDRIERAIQRRRRNDSYRFAVLMLDLDRFKFIN 820

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G   GD++LV + RR+  +++  D +ARL G+ F ++L   ++  +I      +  +
Sbjct: 821  DSHGHTTGDNLLVEVARRMRPVVRAGDTVARLGGDEFALLLEDVDSPRRIVQITRRLLAA 880

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +  P+ +  + +  +ASIG    T    T+  +L++A++AMY AK +G      F  S  
Sbjct: 881  LERPVRMGAKVVRTSASIGMVLRTQGYDTADALLRDADIAMYQAKAQGKGRFRVFNQSMH 940

Query: 701  RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            R     + ++ DL +A+   +LYL Y P++ +    ++G EAL++W HP  G +  + F+
Sbjct: 941  RHTMEMMTLEGDLSMAMRRKQLYLEYQPVLAVDGARLLGFEALVRWRHPTEGAVPPARFI 1000

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817
             +AEE  +I  I  ++LE+ A  +  WR        +++ +N++++      L   +  +
Sbjct: 1001 PMAEETGLILRIGQWVLEQAAATLARWRATLPGAHDLYVSVNLSARQASQPNLTGRVARI 1060

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +S T   P  +KL  +E+ +M +P+ +   L  LR++G+ + +DDFGT  S L+YL   P
Sbjct: 1061 LSDTGLPPEALKLEITETAIMKDPDGALQRLEALRRLGVGIGIDDFGTGYSSLAYLQRFP 1120

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             DT+K + S ++      +   I+R+++ + +++   ++A+ +        +  +GC  +
Sbjct: 1121 VDTLKVDRSFVSAVAGDAENREIVRTVVTLGRSLGLHVVAEGVETAEQFAIVAELGCHSV 1180

Query: 936  QDSHVASPLGFNSILKLLKE 955
            Q  H + P+     +  +  
Sbjct: 1181 QGYHFSRPVAEERAVAFIAA 1200



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 1/141 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I+ +       + +    +R  +A+  + D +W+W++  + +  +P    ILG A  
Sbjct: 465 IQTIRDITERHNQMRELEKSRQRYDMAISATNDGIWEWELDTNTLYHSPRCLEILGRAPD 524

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +           +H  DR    T +    G    R ++EFR+R  D  + W++ R     
Sbjct: 525 ATL-SPMAIAAILHPEDRLRVLTEVRRITGEDAERFEHEFRIRHTDGTWRWVLARGAARR 583

Query: 504 NSNGDILRYIGIANDITEQKK 524
              G + R  G   DIT+ K+
Sbjct: 584 GPGGRLNRVAGALADITDHKQ 604



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 64/240 (26%), Gaps = 13/240 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT----LASIVLYYTYFIIYH 329
              R   ++       +   A    +  + P +   +  +     +A+  +      +  
Sbjct: 46  DTPRRIRRLRTPPHPRLVLHAFRLPVLPFVPRLRLPLPTLIDIGAVAAAAIVTPIATVRP 105

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
                E AV    + +L  +    +   +                +    +         
Sbjct: 106 AWAAVEGAVPWTSSALLFGLAAGLVLGLLAGLRLRRGKAAGAKQDVQRGALPHAHAAASG 165

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGP 448
                  +  +    E+       +   ++            P+ A I G  +   M   
Sbjct: 166 QADASTQAVDLDRAREQYHAIFTNAPVGIFRVTPEGRYENVNPEYARIWGCPTTEEMLEC 225

Query: 449 IRNWLPYIH--INDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNS 505
           + +    ++    DR  F   L +      GR+ + E R++  D    W ++  R +   
Sbjct: 226 VSDIPRQMYANPADRQRFVGALQA-----TGRVDRMELRLKRRDGSLFWGLVSARLVRGP 280



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 49/223 (21%), Gaps = 26/223 (11%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           ++ G+          PA                  + N   +     G     +      
Sbjct: 267 LFWGLVSARLVRGPAPAQAAQTGQIAKTGQTAGTGVTNGTYRADAKAGNAPAEVDYIDGF 326

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +         +     R    +    D V   D  R  +     +  + G ++  M 
Sbjct: 327 VLDITEQKAMQDQLSEAWRRLRDIIDFLPDAVLVLDASRRVIAWNRAMEEMTGHSASEML 386

Query: 447 GP----------------IRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           G                 + +W         +    F    D           +      
Sbjct: 387 GRGNFAYALPFYGERIPLLGDWFFSPDMPQPSHYTRFSEHGDKLAAEAYVPTLF------ 440

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              +   +      + +  G +   I    DITE+   +  + 
Sbjct: 441 -GGRGAHVWTVASALRDGEGRLNGVIQTIRDITERHNQMRELE 482


>gi|284050232|ref|ZP_06380442.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Arthrospira platensis str. Paraca]
          Length = 504

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 129/509 (25%), Positives = 271/509 (53%), Gaps = 11/509 (2%)

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMII 497
           G     + G     +       ++ ++  ++  +    G  +   +++R  + ++ W+  
Sbjct: 1   GYTPEELIGKKPTDIF----QSQELYQVCMEYSLSILPGISRPIIYQIRKKNGEYIWLET 56

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + + ++ G++      + D++++ K+ E +  +A  D+LTG+PNR   + +L   L  
Sbjct: 57  LTKVILDNQGEVRHLQSASRDVSDRIKAEEQLKYDALHDSLTGLPNRTHLMAQLDMALKR 116

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  ++NL+  ++ +D+D +K +ND LG  +GD +L  + + I   ++  D+LA L G+ F
Sbjct: 117 AQNNENLQLAILFLDLDNFKVVNDSLGHLIGDKMLSLVAKIIKNFVRDTDLLAHLGGDEF 176

Query: 618 GIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            I+L       +    A  + +S+   P+ + ERE+ V +SIG  + T+    + ++L++
Sbjct: 177 VIVLEYLEVIHEAIRVAERILESLRTSPLQIGEREVFVNSSIGIVARTNRHEKAEDLLRD 236

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LAMY AKH G      F   +      ++ ++ DL  A++N+EL L Y PI+ +  ++
Sbjct: 237 ADLAMYRAKHEGRGRYAIFDPLMHFHAVQQMHLENDLRKAIKNNELVLYYQPIVNIKTQK 296

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I GLEAL++W HP+ G +S   F+ IAE   +I  I  ++L +  + +  W++Q     +
Sbjct: 297 IQGLEALVRWQHPERGLLSPGHFIEIAENTGLIIPIGKWLLHKACQQLEEWKNQFPSHCL 356

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ K L    L E +  +++    + + + +  +ES+++ N +++  LL +++  
Sbjct: 357 KMSVNLSVKQLE-GFLLEQLDEVLNSYNLNHNSLVMEITESMLVANVQKTCDLLSQIQAK 415

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912
           GI L++DDFGT  S LSYL  +P +++K + S ++    +++   I +SII ++K ++  
Sbjct: 416 GIGLSIDDFGTGYSSLSYLHQLPVNSLKIDRSFVSPENLSDRHQVIAKSIIALSKLLKLH 475

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +IA+ +        L ++GC+  Q    +
Sbjct: 476 VIAEGVETPEQFYWLKKLGCEAAQGYLFS 504


>gi|119470913|ref|ZP_01613497.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium
           TW-7]
 gi|119445935|gb|EAW27215.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium
           TW-7]
          Length = 695

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 261/568 (45%), Gaps = 15/568 (2%)

Query: 391 LATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           L+    +Q I +  E+          D+++  D     +    +    L ++     G  
Sbjct: 131 LSDVKKAQAIATFKEQMLKTIFEAIPDLLFLMDYNGIIIDYHANNQDALYVSPDQFVGN- 189

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            N L  +  +    F   ++  +      + +++ +     Q +    RI  +   +   
Sbjct: 190 -NMLDILPKSVAKKFEVYIEKAIEQD-EIVTFKYELSVPQGQVY-FEARINKVLKYD--- 243

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            + + I  DITEQ +S + I   A+ D+LT +PNR   LDRL+ +   +  +D  +  V 
Sbjct: 244 -QIMIIIRDITEQHQSEQLIRKQAYFDSLTQLPNRLLALDRLSQLTVEATRNDE-KAAVF 301

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +KKIND LG   GD VL+    R+   L+  D + RL G+ F I+    +    
Sbjct: 302 FLDLDDFKKINDSLGHEAGDKVLIETANRLQRALRKADTIGRLGGDEFIILSKGISTQQN 361

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  + ++   P  +  RE+ +T SIG A +  +  + S++L+NA+ AMY AK  G 
Sbjct: 362 AVGIAEKLLQNFREPFTIEGRELMLTISIGVAMFPDNGKSVSDLLRNADTAMYQAKALGR 421

Query: 690 NHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    F        +  +  +E +  A++ +E  L Y P   +   EI+G EAL++W +P
Sbjct: 422 NTYSFFTNQMNTVIQRRLTIEEQMRGALQRNEFILYYQPQFDVKKNEIIGAEALLRWLNP 481

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLL 806
             G+++  EF+ IAE+  +I +I  F++E     +  W++ +       I +N++     
Sbjct: 482 VLGSVAPDEFIPIAEKTGVIISIGEFVIEESLSLLNRWKNVEQLNRNFSIAVNLSPSQFK 541

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L   ++  +S     P  ++L  +E V+M         L  +  +G+ L++DDFGT 
Sbjct: 542 DLSLFNFIKTSLSNANIEPQSLELEITEGVLMSGESSITDTLNDITNLGVILSMDDFGTG 601

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PF+ +K +   + G T+     +++ + I M+  +   ++A+ +  +  +
Sbjct: 602 YSSLSYLRKYPFNVLKIDRGFINGITKNNEDYSLVEATIAMSHGLGLKVVAEGVETKEQL 661

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952
             L  +GCD  Q  + + P+    ++  
Sbjct: 662 TILKELGCDLAQGYYFSKPIPEQDLIDF 689



 Score = 38.8 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 3/86 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479
           +D  R  V        + G       G        I     R+        ++       
Sbjct: 35  YDEQRRVVYWNKGSELLYGYKQEEALGKKLE--ELIVPAPMREMVIEAHTKWINEGVAIP 92

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNS 505
             E  ++  +    ++        N 
Sbjct: 93  AAEILLKHKNGTDIYVYSSHAMFENE 118


>gi|27379924|ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium japonicum USDA 110]
 gi|27353077|dbj|BAC50078.1| blr4813 [Bradyrhizobium japonicum USDA 110]
          Length = 917

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 154/608 (25%), Positives = 274/608 (45%), Gaps = 26/608 (4%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            R    I+        + I  ++   V + +       + +  + +R   AV      + 
Sbjct: 307 WREQIGILISVAASSALAIAGVLIAIVRKLLEQHRLSRERLTLEKQRLDRAVNNMTQGLL 366

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGR 478
            +D  +  V        + GL+   +  P  ++   I H +   +F   +D +V    G 
Sbjct: 367 LFDAEQRLVVCNQRYIEMYGLSP-EVVKPGSSFHDIIAHRSATGSFTGDVDGYVARVLGD 425

Query: 479 LQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           +     +    AD +   ++        ++G    ++    DITE+++  E I   A  D
Sbjct: 426 IHARNSMVVDTADGRSIHILNE----PLADG---GWVATHEDITERRRIEERITHLAHYD 478

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LT +PNR  F + L   L  +A  D     V  IDID++K +ND LG  VGD++L S+ 
Sbjct: 479 ALTDLPNRAMFHEHLRQEL--AAITDGEAIAVHYIDIDEFKGVNDALGHLVGDELLKSVA 536

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +       D +ARL G+ F I+  +  +  ++ D    + ++I  P + +   +T  A
Sbjct: 537 TSLSRCAGPADFVARLGGDEFAIVQGAVTSPDQVNDLVARVFQAIRAPFDCMGHHLTTDA 596

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLA 714
           SIG A          ++LKNA+LAMY AK  G      F         +R  ++ DL  A
Sbjct: 597 SIGIALAPGHGTVLDQILKNADLAMYAAKSAGRRTYRFFEPEMDAKVRERRQLEIDLRHA 656

Query: 715 VENSELY----LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +    L     + Y P + L D+ I G EAL++W HP+ G +S +EF+ IAE+  +I  I
Sbjct: 657 IAQGGLEGGLEVYYQPCLGLKDDRITGCEALVRWRHPERGMVSPAEFIPIAEDTGLINEI 716

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L    RD  SW D      I + +N++        L   + A ++ + +  SR++L
Sbjct: 717 GEWVLATACRDAASWPD-----DIRLAVNVSPVQFKSGTLALKIMAALAASNFPASRLEL 771

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V++ + + +  +L +LR IG+ + LDDFGT  S LSYL   PFD +K +   +  
Sbjct: 772 EITEAVLIRDDDTALAILHQLRAIGVRIALDDFGTGYSSLSYLHRFPFDKIKIDRCFVND 831

Query: 891 ST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +   +I+++++ +A     T  A+ +  E   + L  +GC  +Q    ++    + 
Sbjct: 832 IAGPDGSASIVQAVVNLAAARRMTTTAEGVETEEQQRLLRTLGCSEMQGYLFSAAKPADK 891

Query: 949 ILKLLKER 956
           +L+L    
Sbjct: 892 VLELFALH 899


>gi|163939565|ref|YP_001644449.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163861762|gb|ABY42821.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 911

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 157/760 (20%), Positives = 299/760 (39%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    ++  
Sbjct: 162 ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLAITD 217

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY---------PMVTASIARITLASI 318
           +L+ YL  +     +  +       +  +   +             ++  +  +  L   
Sbjct: 218 YLYFYLQDDLSDCSLILLRCLYRVFLLFIAIAASISKNASSRRNYFIIDPTFGKKLLVIF 277

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 278 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 331

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   +     +      + +L
Sbjct: 332 NNQLEQKVSQRTEDLIKKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 391

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  SG + G            DR      L          LQ   +     +   W  + 
Sbjct: 392 GKNSGELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 448

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  KK  + I   AF D +T I NR  F   L   ++ +
Sbjct: 449 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIERA 507

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    ++ ID++++K IND  G ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 508 RKTQG-EFGLLYIDLNRFKTINDTRGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 566

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ +     ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 567 IIVHNHT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 625

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +      ++
Sbjct: 626 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPKALENNELFLLYQPQVDSKTGMVI 685

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I  I  + L+   R +  W        + +
Sbjct: 686 GAEALIRWQHPELGLISPFEFIPIAEETSQIIPIGKWTLQEACRQLKKWHSA-GYANLKM 744

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 745 GINLSAIEFEQKDFVQAIISTIEEVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 804

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+ +II +A  +   +I
Sbjct: 805 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 864

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +K L 
Sbjct: 865 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 904


>gi|192360825|ref|YP_001981342.1| Diguanylate cyclase/phosphodiesterase [Cellvibrio japonicus
           Ueda107]
 gi|190686990|gb|ACE84668.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Cellvibrio
           japonicus Ueda107]
          Length = 940

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 136/575 (23%), Positives = 246/575 (42%), Gaps = 14/575 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                +        R  L       + + +   D   + +        I G     + G 
Sbjct: 357 RLAALAIETTRAENRLQLTACVFSHAREGILITDAQGNIIEVNTTFTDITGYTRDDVIGK 416

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L   + +D   F  +  S V    G    E   +  +   +   + I  + +S G 
Sbjct: 417 NPRLLQS-NKHDAVFFERLWHSLVNE--GAWCGEIWNKRKNGDLYVASMTISAVKDSRGQ 473

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I  ++ + NDIT  K+    +   A  D LT +PNR    DR+   L  S     L   V
Sbjct: 474 ITHFVDLFNDITHIKEHQRQLEHIAHYDALTHLPNRVLLADRMKQALLHSQRS-GLSLAV 532

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M ID+D +K IND  G  +GD +LV+++ R   +L+  D LAR+ G+ F ++L       
Sbjct: 533 MYIDLDGFKAINDQYGHDLGDQLLVAISSRFKSVLRESDTLARIGGDEFVVVLNELEQPA 592

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                   +  + A P+ L ++ + +TASIG   + S    + +++++A+ AMY AK RG
Sbjct: 593 AYQPVLDRLLATAADPLILRDQALRITASIGITLYPSDTADAEQLIRHADQAMYLAKQRG 652

Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F V    + +   +    + LA+E  E  L Y P + +    +VG EALI+W H
Sbjct: 653 KNGWHLFDVDRDVATKHQYESLERIRLALEQREFILHYQPKVNMKTGALVGAEALIRWQH 712

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G IS  EF+ + EE  +   +  ++++     I  W+ +     + + +N+ +  L 
Sbjct: 713 PTRGMISPGEFLPLIEEHPIGLDVGEWVIDTALSQIEHWQREG--LALPVSVNLCALQLQ 770

Query: 807 DNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                + +  L+      +P +++L   E+  + +       +     +G+   +DDFGT
Sbjct: 771 QGRFAQRLSELLQAHPDVAPGQLELEIVETSALADMTDVANTMRACNALGVRFAVDDFGT 830

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P +T+K + S +          AI++ +I +A+     +IA+ +     
Sbjct: 831 GYSSLTYLKRLPAETLKIDQSFIRDMLDDPDDFAIVKGVISLAQAFHRQVIAEGVESVAH 890

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + L  +GC+  Q   +A P+    I   ++   P
Sbjct: 891 GEMLIPLGCELAQGYGIARPMLAGEISSWIQRWTP 925



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 5/225 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                 +  T++L  D+    L   +         T +Q  +A    ++       R   
Sbjct: 27  SLFAPPLTETQQLKRDVQIYQLALEMQREEWRQAQTQLQTTIAQQRVAEEQLRTSARLLE 86

Query: 410 AVLG-SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           A    +     + +    R+  + +   I   +           L +   + R   +  L
Sbjct: 87  ASQAIANVGSVEMEFPSRRLYWSAETYRIHDTSPEEYTPTFDLSLDHYLPDSRQKLQAAL 146

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              +         E        +   +        +  G ++R  GI  DI+ +K++   
Sbjct: 147 QKALET-GEVFDLELEKYTFKGRKIDVRTTCTATFDQLGRLIRLTGIFQDISARKQAERY 205

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTT-ILDLSATDDNLRPTVMVID 572
            L ++    L  +         L    LD+  T+ ++  T++++D
Sbjct: 206 QLHHSHILEL--LLQHAPLQQVLEAIALDVERTNPHMLCTILLLD 248


>gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 705

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/583 (23%), Positives = 260/583 (44%), Gaps = 12/583 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDI 434
           +L +   G  +  H L      Q    D ER    +  S D ++  +      +      
Sbjct: 122 LLRLKAFGDYLKSHSLILEDQLQQRTIDLERFRTVMDASEDAIFLINRNTMSLIEFNRRA 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG  +  +       L        +    + D  +  +      E ++R        
Sbjct: 182 CQLLGYTAEELSHKTPAELG---ETSMEQLEVVYDQIIAGKGPSEPLETQIRDKSG--RD 236

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   +   G+    +GI  DIT +K+S + +L  A  D LTG+PNR  F   L   
Sbjct: 237 VEVEIHRQAYRTGEDWVIVGIVRDITRRKESDQRLLTMAHYDTLTGLPNRDLFFTSLQMG 296

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +A     +   + ++ID +K IN+  G  +GD+VL+ ++RR+   L   D L R+ G
Sbjct: 297 MTQAAIS-RWKLAALTVNIDGFKNINETWGHVLGDEVLLEVSRRLSNCLNASDTLGRVDG 355

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +IL+              +R ++  P  +  + + +TASIG A +      S E++
Sbjct: 356 DQFALILMLRPGQADTRQTLERIRNALRAPFRIEGQSLVMTASIGIALYPEDGEDSRELI 415

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A  AM  A+  G ++   +          R+ ++  L  AV N    +VY P + L +
Sbjct: 416 RHAYTAMNSARKIGPDNYRFYTPQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNN 475

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I GLEAL++W  P    +S + F+ + E L +I  +  ++++ +   I  W+      
Sbjct: 476 DRICGLEALLRWPRPGHPGVSPAVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG- 534

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +NI+ + +  + L   ++  + K   +P  +++  +ES +M N   +   LG LR
Sbjct: 535 SFQVAVNISGQQISSSSLVADIRQALEKHNVAPQWLEVELTESSLMENTAHTIATLGALR 594

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
              +S+++DDFGT  S L+YL   P D +K + + +    S  +  AI R+II +A +++
Sbjct: 595 ANRVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLD 654

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +IA+ +     +  L    CD IQ   ++ PL    +   L
Sbjct: 655 LQVIAEGVETPEQLAFLRENHCDQIQGYLISKPLPLEELETFL 697


>gi|269963029|ref|ZP_06177366.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832272|gb|EEZ86394.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1004

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 277/581 (47%), Gaps = 14/581 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           + +L  F     +L T    Q       ++  +    S D +WDWD+  +++     +  
Sbjct: 423 LDMLSLFIERDALLNTSTLRQKNSQQLLQQLKVVSNSSNDGIWDWDLTSNKLRWNSRLVN 482

Query: 437 ILGLA--SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           +LG    S   +        +IH  D D     + + +  +    + EFR+R  DN + W
Sbjct: 483 MLGNENISHKRYINCDQLFQFIHPEDIDQLEEHIQAHLVDKVA-FKTEFRIRKHDNSYIW 541

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +      + N+ G  +R+IG   D+TEQ++S   I   A+ D LTG+ NR+  ++ +   
Sbjct: 542 VQANGSAVRNAQGHAVRFIGSMTDVTEQRESAAKIHHMAYFDALTGVANRRKIMEEI--- 598

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++    + +    +M++D++++K IND  G  VGD +L  +T+ +  +L  P  +ARL G
Sbjct: 599 VEHIRVNPDKPRAIMLMDLNRFKMINDSFGHHVGDALLCHITKELESVLVEPHTIARLGG 658

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +     +N+ +    A  + ++I  P+   E E+    S+G + + S   +  E++
Sbjct: 659 DEF-LFFCHVSNAAQANQIASMILRTIEKPMIHEEMELVSQGSLGISFYPSDGHSPEELV 717

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMD 732
           K A++AMY AK  GG  V  +  +   + + +I  +  L  A+E SE+ + Y P +    
Sbjct: 718 KKADIAMYQAKQLGGRKVVHYNDTMEATTQSLIKFEHHLNRALEQSEIDVFYQPQLCHKT 777

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + ++ +EAL +W     G +  S+F+ +AE   MI  +  ++L R+ RD+   +      
Sbjct: 778 QRVIAVEALARWQSEALGFVPPSQFIQVAENAGMISRLGEYILNRVCRDVQ--QSAWLQS 835

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +NI+++ L+     + +   I       S   +  +E+  + + +     L +LR
Sbjct: 836 MSHISVNISARQLVQPYFADEVIQTILNYRLPLSLFCIEITETAAISDYDLCVKSLEKLR 895

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           K GI+++LDDFGT  S LS L  +P   VK + S +      +  +  + ++I M +++ 
Sbjct: 896 KAGITISLDDFGTGFSSLSLLKKLPLSEVKIDRSFIADIIKDQSNLDFVSTMILMGRSLG 955

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             ++A+ +     +  L+ +G D +Q  + + P   + + +
Sbjct: 956 YRVVAEGVETAEHVSSLSELGVDLLQGYYFSKPQPISQLEQ 996


>gi|163853267|ref|YP_001641310.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664872|gb|ABY32239.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 700

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 258/575 (44%), Gaps = 23/575 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449
           A       +     R   A+      +  +D  +  V        I GL   ++H  +  
Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLVVWNRRYLGIFGLPDDAVHVGMGQ 183

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505
           R  +  +           +D+     R  L  +         AD +   +I R  PM++ 
Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVIHR--PMADG 241

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    ++    DITE++++   I+  A  D LT +PNR    +     L    T     
Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAP 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND  G AVGD +L ++  R+   ++  D++ARL G+ F  +L    
Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684
           ++   A  A  + +++A P  L    + +  S G A            +LK A+LA+Y A
Sbjct: 357 DAAAAATLAERLIETVAAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G   V  F         +R+ ++ +L  A+      L Y P++ L D  I G+EALI
Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALAQDRFELHYQPLVDLSDNRITGMEALI 476

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S + F+ +AEE  +I  I  ++L +  RD + W  +     I + +N++ 
Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L      + +   ++ +    SR++L  +E+V++ + E +   L  LRK+G+ +++DD
Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S +SYL   PFD +K + S +     +    AI+R+I+ +  ++  T + + +  
Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAESEAGAIIRAIVSLGASLGITTLVEGVET 651

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           E  +  +   G   +Q    + P   + I  LL+ 
Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 19/159 (11%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E   +A     D +W  D        +P    +LG +   + G  R+ L      
Sbjct: 3   LNDLEELARIAF----DWLWATDAEDRFSYVSPGAERVLGRSPAELIGLTRSALVC---E 55

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                  +    +  RR      +  R  D    W  I  RP  +  GD L Y G+ +D+
Sbjct: 56  GEGESLAVYRETITARRPFRDLTYVYRHPDGTPRWFEISGRPHFSPEGDFLGYHGVGSDV 115

Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           TEQ +     +E     + Q       NR+ F   L  +
Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146


>gi|192360118|ref|YP_001983809.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190686283|gb|ACE83961.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 805

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 165/804 (20%), Positives = 321/804 (39%), Gaps = 42/804 (5%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
             ++  +  +  LL I+     +  R      +  +    L  I+        + +    
Sbjct: 6   QYWQAFLRRLDQLLQIYTLDETVGGRFRSEQISAIIRLTPLTVIANLINVSMIVYSYRDS 65

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHW------NRWHAKVGYITFSGIACIAILFCMSFY 302
            +          L   + +    +L        N+   +      +    +  L+ +   
Sbjct: 66  AIHPLLVVWGCLLLGLIFLGARPWLILIRGHWRNQVSERSLRRAVTHAGLLGFLWGIVPL 125

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
              + ++ A   + S+V           +    +A +L    + I      L+  + +R 
Sbjct: 126 ICAIHSNAANTLIISVVCVGMLCAGGFALATVPKAAILFCLLVGIGSELSLLFNPLLQRW 185

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
           D  ++       ++  VI    T    ++A    +Q               + D +W+ D
Sbjct: 186 DLALLLLVYCSTVIAAVITSARTFGARLMAEAEAAQQQQLVSLLLHDFETHASDWLWELD 245

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQ 480
                   +P +A++LG +   +H      L  +H  D       ++L   +   +    
Sbjct: 246 ANGQLRDPSPRLASLLGRSLEELHEIPFTTLFQMHPEDGLGGEALSLLRERLRQGQAFRH 305

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
               V+A + +  W  +  +P+ +  G ++ + G+ +D+TEQ+ +   +   A  D LTG
Sbjct: 306 LVVPVQAHN-KACWWQLSAKPLLDRRGHLIGWRGVGSDVTEQRNAHREMNRLANFDALTG 364

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR  F +RL      S   ++    ++ +D+D +K +ND LG  VGD VL ++ +R+ 
Sbjct: 365 LANRYQFNNRLQQA-KTSLRAEDKLFALLFLDLDNFKTVNDSLGHGVGDKVLQAVAKRLQ 423

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           + ++  D+LARL G+ F +I   E+   +    A  + +    P  +    + +  SIG 
Sbjct: 424 KAIRKDDLLARLGGDEFALISWGEDAVSQAGQIAQRLLRCFHEPCQIDGLNLQIGCSIGI 483

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN- 717
                       +LKNA++A+Y AK  G N  + +          R+ +  D+  A+E+ 
Sbjct: 484 VLAPEHADQPETLLKNADMALYAAKSAGRNTFQFYERGMGDSAQRRLNLLNDMRRALESV 543

Query: 718 ----------------------SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                                  E  L Y P I L D  I G E L +W HP+ G I   
Sbjct: 544 PCIKPLCTYVDPHFRWQDQPLLPEFELHYQPQISLADGRITGFEVLTRWHHPERGTIPPV 603

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  MI  + +++L    R    W          + +NI++       L   ++
Sbjct: 604 EFIPLAEESNMIIPLGIWVLVEACRTASHWPA-----GWRLAVNISASQFSHGSLVPVVK 658

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +  +  +P+R++L  +ES+++ +   +R +LG LR +G+ + LDDFGT    L+YL  
Sbjct: 659 RALQLSGLAPTRLELEITESLLIQDAHSTRQILGELRTLGVRVALDDFGTGYCSLAYLRS 718

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S +T         AI+  II +A  ++   +A+ I    +   L   GC 
Sbjct: 719 FPLDQLKIDRSFVTALQQDASARAIVSGIIQLANALDLETVAEGIESPQEAAMLRDTGCR 778

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q    A+P+  +++ +  +   
Sbjct: 779 LGQGYLYAAPVPGHALDEFCRRYQ 802


>gi|229116983|ref|ZP_04246366.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228666511|gb|EEL21970.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 800

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 162/759 (21%), Positives = 311/759 (40%), Gaps = 30/759 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 53  ILFLSIGDVFLSFIFPILDLLLLLLGVTLIFRPAIFNTKSK----LFIFILVLTGLAITD 108

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V  +       +  +   +           Y ++  +  +  L   
Sbjct: 109 YLYFYLQDDLSDRSVILLRCLYRVFLLFIAIAATIPKNASSKRNYFIINPTFGKKILVIF 168

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 169 PYLAVTVLIGFTLKEQTSSSTLIMGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 222

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q  +     S  +  + ER         D +   D     +      + +L
Sbjct: 223 NNQLEQTVSQRTMDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGTVLNINQAGSMLL 282

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+    + +          LQ   +     +   W  + 
Sbjct: 283 GKDSAVLIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 339

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +  +
Sbjct: 340 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELEKSIKRA 398

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  +  R    L     LAR+ G+ F 
Sbjct: 399 QKTQD-KLGLLYIDLNRFKTINDTLGHSIGDRVLKEVANRFRTCLSPTIPLARIGGDEFA 457

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +       + +    ++ SIG A +    I ++ +L++A+
Sbjct: 458 IIIHNQT-EQQLLDLCETLFRITEESFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 516

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 517 IAMYSAKEKGNNAVCMYDETLSRKITRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 576

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 577 GSEALLRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQKACRQLKEWHSA-GYSNLKM 635

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     S I L  +E + M + + +   L  L+  G+
Sbjct: 636 GINLSAIEFEQKDFVQIIISTIEEIGVPASSIDLELTERIAMVDEKETLSKLKALKSYGV 695

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 696 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIETSTDGDEIIQTIISLAHTLNMKVI 755

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  +  +  L +  C  IQ  + + P+  +  L  L
Sbjct: 756 AEGVETKGQLTVLQQNACYLIQGYYYSKPVNEDEFLMFL 794


>gi|144898172|emb|CAM75036.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 840

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 141/615 (22%), Positives = 274/615 (44%), Gaps = 18/615 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW- 421
            +          + +    +   + + +         +    +R          +V+   
Sbjct: 226 GDQFPLELTTSEVRMEGHRLFVGIGRDITQRKATENALLESEQRLRAIAGNMPGMVFQRV 285

Query: 422 ---DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
              D        +    T LG+    +      +L  +  +++  F   L          
Sbjct: 286 LGPDGTMRFTYVSEGCRTFLGVEPEELLEDPELFLQCMTADEQKLFLAALARSAET-LEP 344

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           L  E  V  A  +  W+  + RP    NG ++ + G+  D+TE+K + + +   A+ D L
Sbjct: 345 LDEEMAVFGAGRRRRWLRGQSRPNRRPNGSVV-WDGVMLDVTERKTAEQRLSFLAYYDPL 403

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR +FL+R     + +A    L   V+ + ID++  IN  +G +VGD VL +    
Sbjct: 404 TRLPNRTAFLERFAGARENAARSHQL-LAVLSLGIDRFGIINATMGHSVGDQVLTASADI 462

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L   DI+AR SG+RF ++L    +  ++ +    +       +++   E  V+ S+
Sbjct: 463 VQSGLSRNDIMARASGDRFLVLLSGHTSRRELTEMVERIHGLAQSAVHVAGDEFEVSTSV 522

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716
           G A +      +  ++KNAE A+  AK +G   ++ F        +  + ++  L   +E
Sbjct: 523 GVALFPRDGEDAETLIKNAEAALQRAKSQGPATLQFFTKEMSSRAAKTLSLQNKLRRGLE 582

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + E    Y P + L+   IVG+EAL++W++P+ G +S  EF+ +AEE  +I  I   ML 
Sbjct: 583 HGEFVPYYQPQVDLVTGAIVGMEALVRWNNPELGMVSPGEFIPVAEESGLIDGICESMLA 642

Query: 777 RIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSES 835
           + AR    W+D     PI + +N++ +       L   ++  + ++   P  +++  +ES
Sbjct: 643 QCARQNKQWQDSGFR-PIPVAVNVSGRQFQYARRLITALETSLGESGLDPRYLEIELTES 701

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STE 893
             M + + +  ++  L+ +GIS ++DDFGT  S LS L   P   +K + S +    +  
Sbjct: 702 SAMRDADSAIAVVQTLKDMGISCSIDDFGTGYSSLSVLKRFPITKLKIDRSFVMDVITDP 761

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ +I+ MAK ++  ++A+ +     +  L  +GCD +Q    + PL    + ++L
Sbjct: 762 NDAAIVDAIVAMAKALKMKVVAEGVEHTQHLDFLRALGCDQMQGYLFSRPLPATEMGQML 821

Query: 954 KE----RF-PLVKNT 963
            +     F P  +N+
Sbjct: 822 ADGKCLHFGPAPRNS 836



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             + ++  ILG A   M       L  IH  DRD     +       R     EFR    
Sbjct: 53  WFSDNVTKILGFAPKDMGVNSNGCLHVIHWADRDRHLDAIRHSAASMRPC-DEEFRAITQ 111

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             Q  W+     P    NG ++ + G+  D+T+ +++   +      
Sbjct: 112 SGQVRWLRGASTP-RLENGQVV-WDGVLIDVTDGRRAEFRLDMLMEH 156


>gi|121594721|ref|YP_986617.1| diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42]
 gi|120606801|gb|ABM42541.1| diguanylate cyclase/phosphodiesterase [Acidovorax sp. JS42]
          Length = 756

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 130/617 (21%), Positives = 253/617 (41%), Gaps = 50/617 (8%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +I  +         + +    + +    +   +      R           ILG   
Sbjct: 145 SIWIIDDIDEQKRAQAQLQAALWEKQVLFDSAMVGIVFLQ-ERRMTRCNRHFEQILGYGP 203

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G + G           +  +         V  +    + +  +R  D +     +R + +
Sbjct: 204 GELAGSSSRRWYLSDEDWHEAGVRCYAPLVQGQA--FEGQMVLRTRDGRAIECEVRSKAV 261

Query: 503 SNSNGDILRYIGIANDITEQ---------------------------------------K 523
            + +      I I  D++E+                                       +
Sbjct: 262 -DPSNVAQGSIWIVMDVSERLRIQRQLAGMHGELEQQVRDRTRELQETVGNLHREIQDRQ 320

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A  D LT +PNR    +R    +  +         VM +D+D +K +ND L
Sbjct: 321 RDQERIYWMAHYDALTELPNRVLLAERGQDAIRQAQES-GAPLAVMFLDLDNFKHVNDSL 379

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV + +R+   ++  D +ARL G+ F ++L    N+   A  A  M+++   
Sbjct: 380 GHRIGDALLVEIAQRLRTTVRQRDTVARLGGDEFVLLLPG-ANAQGAARVAAKMQEAALQ 438

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P+++   E+++  S+G A +         ++++A+ AMY AK  G N    F  +     
Sbjct: 439 PVHIQHHELSLALSMGIALFPEHGSDFETLIQSADTAMYRAKADGRNSFRFFTPTMQAQS 498

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +   L  A+E ++L L Y P + +    + G+EAL++W HP+ G +S +EF+ +A
Sbjct: 499 ARALQLTNALRRALERNQLSLHYQPQVSIATGRVCGVEALLRWHHPELGAVSPAEFIPVA 558

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  I  ++L      + +W  Q   P + + +N+++      +L E +  L+++ 
Sbjct: 559 EDTGQILPIGEWVLRTALAQLRTWHSQGL-PALTMAVNLSAVQFRQPQLLELVDRLLAEY 617

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +E+V + +P  +   + +L   G+ L++DDFGT  S LS+L       +
Sbjct: 618 GVQPHLLELELTENVAVADPHAAIATMDQLHAKGVRLSMDDFGTGYSSLSHLKRFQIYRL 677

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +          AI+ +II MA+ +     A+ +     +  L   GCD  Q  +
Sbjct: 678 KIDQSFVRDLDHDGNDRAIVSAIIRMAQALGMRTTAEGVETAHQLTFLREQGCDEAQGFY 737

Query: 940 VASPLGFNSILKLLKER 956
            + PLG   + + L +R
Sbjct: 738 FSRPLGAPHLQQYLLQR 754



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 16/148 (10%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIH 457
            +      Q   +  +G  +      R  V      A I GL       G        +H
Sbjct: 35  AMQRVLREQQTLLDSAGVGIVFIR-NRALVRCNQRCAEIFGLPSPEDAIGRSS---EALH 90

Query: 458 IND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +    R+  R    +    +    + E +++  D Q  W  +  R ++  +      I 
Sbjct: 91  PSRGAFRELGRAAYPTLARGQA--YRTERQLKRCDGQLFWAHLTGRLINPRDSR-EGSIW 147

Query: 515 IANDITEQKKSLEG-----ILCNAFQDN 537
           I +DI EQK++               D+
Sbjct: 148 IIDDIDEQKRAQAQLQAALWEKQVLFDS 175


>gi|186681944|ref|YP_001865140.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nostoc punctiforme PCC 73102]
 gi|186464396|gb|ACC80197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Nostoc punctiforme PCC 73102]
          Length = 664

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 145/598 (24%), Positives = 279/598 (46%), Gaps = 43/598 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +  + +R       + D     +IV          AT+LG+    + G        I
Sbjct: 63  RAEVEKERQRYQDLFEFAPDAYLVTNIVGTIQEANHAAATLLGVNQKYLVGKPLILF--I 120

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYE----------------FRVRAADNQFHWMIIRIR 500
              DR  F + +++F       L  +                ++++     + W++  I 
Sbjct: 121 AQQDRQFFCSQMNNFQELLNWELNLQPRGGKPFPAMIKASAAYKLQGKQVGWRWLLCNIS 180

Query: 501 -------PMSNSNGDILRYIG------------IANDITEQKKSLEGILCNAFQDNLTGI 541
                   +  +  ++   +             +  +ITE+K++   +L  AF D LTG+
Sbjct: 181 ERKKTEEMLHQAYDELEIRVAERTAELVKANQKLLTEITERKRAESQLLHLAFYDILTGL 240

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +F++RL+  ++ S    N    V+ ID+D++K IND LG   GD +L++   R+  
Sbjct: 241 ANRAAFMNRLSHAINYSKRHSNYLFAVLFIDLDRFKVINDSLGHLNGDQLLLATASRLQV 300

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            ++  D  ARL G+ F I+L    +   +   A  +++ +A+P  L  +E+ +TASIG A
Sbjct: 301 CVRSIDTAARLGGDEFTILLEGIQDVSDVITVAERIQQELALPFELEGQEVFITASIGIA 360

Query: 662 SWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
             ++       E+L++A+ AMY AK +G    + F    + +   ++ ++ DL  A+E  
Sbjct: 361 LSSTLDYKHPEEVLRDADTAMYQAKVQGRARYKLFNSDMYANALAKLQLETDLRRAIERL 420

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  + Y PI+ L    I+G EAL++W HP+ G ++ ++F+ +AEE  +I +I  ++L   
Sbjct: 421 EFRVYYQPIVSLTKGSILGFEALLRWQHPERGLLNPADFISLAEETGLIFSIGKWVLHEA 480

Query: 779 ARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
            R + +WR   +   +  I +N++ K     +L E +  ++  T      + L  +ESV+
Sbjct: 481 CRQMQAWRMCHDSNLLEKISVNLSLKQFSQPDLIEQIGQILHSTGLDADTLTLEITESVI 540

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896
           + N ++      +LR++GI L++DDFGT  S LS L   P   +K + S ++  +  +  
Sbjct: 541 VANGDKVTATFLQLREMGIKLSIDDFGTGYSSLSRLYNFPISVLKIDRSFISLMSANKKN 600

Query: 897 -AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             I+  I  +A  +   ++A+ +  +  +  L ++ C+Y Q    + PL  +    L+
Sbjct: 601 LEIIEIIATLAHKLGVDVLAEGVETKEQLAFLRKLKCEYGQGHFFSVPLNSSEAEALI 658


>gi|163851650|ref|YP_001639693.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663255|gb|ABY30622.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 803

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 150/658 (22%), Positives = 267/658 (40%), Gaps = 39/658 (5%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYE--RAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           I  +   +  +           +  +     L +   +   +               D  
Sbjct: 177 IVALNQGAAAILGRPVASLQWQRLGDLVPVRLGVTHRLSGVLGCADRATFELAVPRADRT 236

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-D 426
              L      I  L+   +             I +           +   +W  D     
Sbjct: 237 TLHLKVEAQAIGDLVAVAMTD--------VGDIKAREASFRFLFESNPLPMWLVDQDSAR 288

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V          G +  +               D+             R        R R
Sbjct: 289 FVAVNEAAVAHYGYSREAFLARGL--------QDQSEAVA-FSFARDGRL------HRHR 333

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            AD     + +  R ++   G     +G A D+TEQ+++   I   A  D LTG+PNR  
Sbjct: 334 RADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRAEARITHMAHHDALTGLPNRAL 391

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F  RL   +   A        ++ +D+DK+K +ND LG   GD +L ++  RI   L   
Sbjct: 392 FTTRLAEAITEHART-GAGAALLCLDLDKFKLVNDTLGHPAGDTLLRAVADRITACLHGE 450

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++ARL G+ F ++L    ++  ++  A  + ++++ P+ L +RE  +  S+G A     
Sbjct: 451 DLVARLGGDEFAVLLR-TPDAGTVSAVAGRIIEALSHPVRLGDRECQIGVSVGIACLPEH 509

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVY 724
              S  +L++A+LA+Y AK  GG+    F  +    DR     + DL  A    +L L Y
Sbjct: 510 GTDSDTLLRHADLALYRAKADGGSIAHCFEAAMDSWDRSRRRREADLHEAFARGDLALAY 569

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++ +    IVG EAL++W HP  G I  SEF+ +AEE  +I  I  ++L +   +   
Sbjct: 570 QPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEETGLIVPIGAWVLRQACAEASL 629

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W D     P+ I +N++     D  L   ++  ++ +  +P R++L  +ESV++   E +
Sbjct: 630 WAD-----PVRIAVNLSPVQFRDPGLVATVREALAFSGLAPHRLELEVTESVLLAASEAN 684

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSI 902
              L  LR +G+ + +DDFGT    LSYL   PFD +K + S ++  G      AI++++
Sbjct: 685 VATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKIDRSFVSRLGEDPHSTAIVQAV 744

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           I +  ++    +A+ +  E+    L   GC+ +Q      P+     +  ++    + 
Sbjct: 745 IGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLFGRPIPAPQAVAPIRREPDVA 802


>gi|78486527|ref|YP_392452.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364813|gb|ABB42778.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thiomicrospira crunogena XCL-2]
          Length = 963

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 142/562 (25%), Positives = 274/562 (48%), Gaps = 13/562 (2%)

Query: 401 FSDGERQSL----AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + ER  +        +G+ +   DI    V        I G +   + G   + L   
Sbjct: 403 RQESERFQMLTRSVFDNAGEGILVTDIHNRFVVVNKKFEEITGYSQEEVLGKNPSILSSG 462

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +    F   +   +  +    Q E   R  D   +   + I  + +  G +L Y+G+ 
Sbjct: 463 QQS--TLFYQAMWQELSEK-DTWQGEIWNRKKDGTMYPEWLTINAVKDKQGRLLHYVGLM 519

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           ND+++QK + + I   +F D LTG+PN   F +RL   + +S   +  +  ++++DI ++
Sbjct: 520 NDLSQQKATEQEITRLSFYDILTGLPNISLFKNRLQQSIQMSV-HEANQVALLIVDIARF 578

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND +G   GD +L  + +R+ +LL   D +ARL  + F I++ S  N   ++ FA  
Sbjct: 579 KMINDAIGYEHGDQLLKGVAQRLTQLLDAEDSVARLGADNFLILMESFQNKQDVSHFAEE 638

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVES 694
           +  + ++P  +   E  +   IG A  +    T+ +++K+A+ A++ AK     G    S
Sbjct: 639 IMNAFSLPFEVEGHEHVLDIKIGVALSSIDGDTALDLMKSADEALFEAKKLPHSGYVYHS 698

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +++  S+    ++ L  A++N EL   Y P I L   ++VG EAL++W HP+ G IS 
Sbjct: 699 SELAATTSEYFFYEKALRQAIDNQELVAYYQPQIVLETNQVVGAEALVRWIHPEMGVISP 758

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+ IAE   +I  +   +L +  +  ++W+ Q       I +N+++  L+ +   + +
Sbjct: 759 AKFIGIAESTGLIIPLGREILLQACQQWLAWQQQGLTLE-RISVNVSTVQLMHSGFVQSV 817

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T   P  ++L  +ES ++ N +    +L  L+ +G+SL++DDFGT  S LSYL 
Sbjct: 818 AQVLEETGLDPKHLELEVTESFLLQNEQEGIAVLHALKALGLSLSMDDFGTGFSSLSYLK 877

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +      ++ +AI+ +II +   +   +IA+ +  E  ++ L + GC
Sbjct: 878 KLPLDQLKIDQSFIRSLPHDKEDLAIVDAIIAVGLAVGVEVIAEGVETEAQMEYLHKKGC 937

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
              Q    + P+     L+  +
Sbjct: 938 QLGQGYGFSRPIQQQEFLQWCQ 959


>gi|104781427|ref|YP_607925.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95110414|emb|CAK15122.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 703

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 146/568 (25%), Positives = 248/568 (43%), Gaps = 16/568 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGS 444
           ++Q       +SQ +    +     +      V   D+   ++         + G    S
Sbjct: 132 LLQAKELAEQYSQEMTKLSQFLDSVITHIPASVIVQDLHSQQILLANQQAEQLFGGQGAS 191

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G +      +     D     L       +G    E RV  A      +  R     N
Sbjct: 192 LVGKLPG--ECMAPTAADYLEQHLARGARSAKG-FAAETRVDTARG-PRTLRSRAMLCRN 247

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G     + +A D TE+  +   I   A  D LTG+PNR  F +RL   L     D  L
Sbjct: 248 -QGQGDYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLKQALLRGEDDGKL 306

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D +K IND  G A GD +L +L +R+   L+  D LARL G+ F ++L   
Sbjct: 307 TAALC-LDLDNFKNINDTQGHAFGDKLLRALGKRLRRELREHDTLARLGGDEFAVVLSGL 365

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++    +  A  + ++I  P  +   + +V  SIG A+       + ++L  A++A+Y A
Sbjct: 366 DSREAASSTAQRLIEAICPPFQIEGHQFSVGVSIGVATAPDDHDQAEQLLGYADMALYEA 425

Query: 685 KHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N  E F V        R +++ DL  A+   +L L Y P++      + G EAL+
Sbjct: 426 KRNGRNRFECFHVELDVAARQRRLVETDLRTALHLGQLELHYQPVVDQQSNSVTGYEALL 485

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G I   +F+ IAEE  +I  I    L    ++  SW  +       + +N+++
Sbjct: 486 RWQHPARGMIMPMDFIPIAEETGLIHEIGARALNLACQEAASWGTEQ-----TVSVNLSA 540

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               +  L   +   ++ +    +R++L  +ESV++GN E +   L  L+ +G+S++LDD
Sbjct: 541 VQFKNAGLVHSVALALADSGLPATRLELEITESVLLGNSEENVRTLRALKDLGVSISLDD 600

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L YL   PFD +K + S +    E R A  I+R+I  ++ ++     A+ +  
Sbjct: 601 FGTGYSSLGYLRSFPFDRIKIDKSFVHDMCESREAMSIVRAITELSNSLMIKTTAEGVES 660

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
              ++ L   GC + Q      P   + 
Sbjct: 661 AEQMQRLMAEGCSHFQGYLYGRPAPASE 688



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 3/126 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L +    D  ++            P      G  +  + G   +       ++R    
Sbjct: 11  YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYQAEEIVGQHYSLFYT--EDERAAGL 68

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +       GR + +      D       + I  + +  G ++ +  I  DI+E+++ 
Sbjct: 69  PAKNLEQARSTGRFEEQGWRLRKDGSAFHAHVLIEAVRDEQGHLIGFAKITRDISERRRH 128

Query: 526 LEGILC 531
            + +L 
Sbjct: 129 EQELLQ 134


>gi|257094361|ref|YP_003168002.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046885|gb|ACV36073.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 714

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 147/591 (24%), Positives = 279/591 (47%), Gaps = 22/591 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+    +++ + +G   Q +    +R + A   +    W+W +   R   + ++  + G 
Sbjct: 115 LLLTQRVRYGMRSGQAIQAVQHSQQRLAHAQRLARMGSWEWSVAEARFACSDEMLRLFG- 173

Query: 441 ASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
               + G   +  +L  +  +DR    +   + +       Q  + ++  D +   +  +
Sbjct: 174 GDWQLAGAATLDGFLASVRESDRALVASARRALLI-DGQPYQITYGMQRPDGKLREVYEQ 232

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            + + ++ G I+R  GI  DI+E+ ++ + I   +  D LTG+ NRQ F       L+ +
Sbjct: 233 AQAVRDTAGRIVRVEGITQDISERIEAQQRIEHLSMHDGLTGLANRQLFAQVAAVELERA 292

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD----------- 607
             +      ++ +DID +K +ND LG A GD VL +L  R+   ++  D           
Sbjct: 293 RRNHG-SCAIVHLDIDHFKSVNDALGNAAGDQVLCTLAERLRSSVRGADLLALNPSMRAA 351

Query: 608 -ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             +AR+ G+ F ++++    +   A  A  + ++IA P+++ +RE+ +TASIG A +   
Sbjct: 352 ETVARIDGDAFTVLVLEVRAAGDAAIIAERLLQTIARPLSIDDREVVLTASIGIAVFPRD 411

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724
             +   + + AE A+Y A+  G      F          ++ ++ +L  A+   EL L +
Sbjct: 412 ADSVEALARAAEQALYAARASGPATYRFFDEEMNAAARVKLHLENELRRAIAQDELRLHF 471

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P +      + G EAL++W HP+ G +   EF+ +AEE  +I A+  ++L   AR +  
Sbjct: 472 QPKVDAASGRLSGAEALVRWQHPRRGLLGPGEFIPLAEEAGLIVALGDWVLAAAARQLRQ 531

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W +     P+ + IN+AS   L+ ++ E   A+I++   +P ++ L  +ES+++ + ER+
Sbjct: 532 WAEAGLA-PVRVSINLASPSFLEEQVAEKCSAIIAQEGIAPEQVVLELTESLLVVDAERT 590

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902
            + L  LR+ G +L+LDDFGT  S LSYL   P D +K + + +T  T   K  AI  SI
Sbjct: 591 IVRLNSLREKGFALSLDDFGTGFSSLSYLKRFPLDELKIDRAFVTDVTRGGKDAAIALSI 650

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I +       ++A+ +        L    C   Q    + PL  +    +L
Sbjct: 651 IELGHQFGMRVVAEGVETRAQADFLLANRCPIQQGFLFSPPLPPDRFAAIL 701


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 132/462 (28%), Positives = 242/462 (52%), Gaps = 12/462 (2%)

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G + + +    D +   ++ + +   A+ D+LTG+PNR  F   L  +L+     +    
Sbjct: 1032 GVLRQRVARLLDAS---RAEKHVHQLAYHDSLTGLPNRALFRKHLEKLLNRV-HSEKRMF 1087

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             ++ +D+D++K +ND LG  VGD +L +   RI   L+  D++ARL G+ F +IL   ++
Sbjct: 1088 AILFLDLDRFKLVNDTLGHDVGDLLLKAAADRIVHCLRSGDMVARLGGDEFTVILEEISS 1147

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            S      A  +   ++ P   L +E+ ++ SIG + + +    +S ++K+A+ AM+ AK 
Sbjct: 1148 SEVAEGVATKICGVLSKPFAFLGQEMYISTSIGISLYPNDGEDTSTLIKHADTAMFRAKE 1207

Query: 687  RGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            +G         + +  + R++++ DL  A++  E  + Y P + L   +++G+EALI+W 
Sbjct: 1208 QGNSYQFYEEGMETAAARRLVLEADLRRALDKKEFTVCYQPQVELSTGKLIGMEALIRWH 1267

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G +S SEF+ +AEE  +I +I  ++L      + SW  Q    P  I +N++ ++L
Sbjct: 1268 HPERGLVSPSEFIPLAEETGLIVSIGKWVLREACVQMQSWLRQGFG-PFRIAVNVSGREL 1326

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               +L + + A++ +T  SP  ++L  +ESVVM   + +     +LR++GI L +DDFGT
Sbjct: 1327 EKGDLVDKIIAVLEETGLSPELLELEITESVVMKCADAAIPKFRKLREMGIKLAIDDFGT 1386

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S L+YL   P DT+K +   +          AI+  II +A ++   ++A+ +     
Sbjct: 1387 GYSSLNYLKRFPVDTLKVDRCFVRDIMDNSDDAAIIVGIIALAHSLRLKVVAEGVETHGQ 1446

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILK-LLKER---FPLVK 961
               L    CD IQ  +++ PL  N I + +L      +PL  
Sbjct: 1447 EAFLKEHHCDSIQGFYLSQPLSANGIEQTILHRHRKGYPLSS 1488


>gi|254457256|ref|ZP_05070684.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086048|gb|EDZ63332.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 574

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 142/574 (24%), Positives = 265/574 (46%), Gaps = 28/574 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHG----PIRNWL 453
            +    E  +  V  +   ++  D    D V         +G     +       I   L
Sbjct: 8   KLKKSNEELAYIVKHAVSEIYILDFETLDYVFANDGALQNIGYTLDELLKLNVYDINKTL 67

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H+         ++  V                D   + +   I+ +         Y+
Sbjct: 68  TRKHVESL-RASCAINDSVSNISEHT-------RKDGTSYTVQASIQSIIYQEKKA--YV 117

Query: 514 GIANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               DI+       E ++  + +   A  D LTG+PNR  F DRL+  +  S   + +  
Sbjct: 118 LFDTDISKLKKVQKELREQKDILHHQAHHDALTGLPNRILFNDRLSQGIKKSKRHNEI-L 176

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +  ID+D++K+IND LG   GD VL   +RR    ++  D L+RL G+ F +I      
Sbjct: 177 ALFFIDLDQFKQINDSLGHDTGDVVLKEASRRFSSKIREEDTLSRLGGDEFSVIAGGLKE 236

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           + + +  A    + +A PI +    + +T SIG + +     ++  +LK A++AMY AK 
Sbjct: 237 ASEASVLANKFIECMAEPIVVGAHTLYLTCSIGISFYPQDGQSAENLLKYADVAMYKAKD 296

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N+ +++             ++  L  A++N E  L Y P I  M + I+G+EALI+W
Sbjct: 297 EGRNNYQTYSSKLTELMHEQVTMRTSLHKALKNDEFILNYQPQIDSMTDRIIGMEALIRW 356

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP+ G +S ++F+ +AEE   I  ++ ++++     + SW ++   P + + +N+A K 
Sbjct: 357 NHPELGRVSPAKFIPLAEETGFIVELDRWVMQEAMSKLSSWYEEGLNPGM-LALNLAMKQ 415

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +  ++  E ++  + +T      I+L  +E  +M NP+ S   L  + K+GI+L +DDFG
Sbjct: 416 IQKSDFLEFLKNTMKETNCLSEWIELEVTEGEIMKNPDESIATLKEINKLGITLAIDDFG 475

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL  +P + +K + S +  +   E  +AI +++I +AK+++ ++IA+ +  + 
Sbjct: 476 TGYSSLSYLKKLPVNKLKIDQSFIKDTPDDEDDVAITKAVIALAKSLKMSVIAEGVETKA 535

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               L    C  IQ  + + P+    +  +L E+
Sbjct: 536 QKDFLILNECLQIQGYYYSPPVDAQKMRDMLIEQ 569


>gi|325275281|ref|ZP_08141237.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324099589|gb|EGB97479.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 854

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 136/562 (24%), Positives = 260/562 (46%), Gaps = 15/562 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +  +R       + D +W+ D        +   A++ G       G   N L     
Sbjct: 301 ALEASEQRFRAVAESASDWIWETDRHHRLTYLSQRFASVTGYPVEDWLGQPLNQLLACDT 360

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                +   L +    +   L+  +R    + Q  +  I  R + + +   +   G A+D
Sbjct: 361 TPLSPWLDALATADPQQLANLRCTYR--DQNGQNRYCRISARAIWHQD-TAVGLRGTASD 417

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++  +   I   +  D LTG+ NR      L   L        L   ++ +  D +K 
Sbjct: 418 ITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQALLRGTDSPPLTLLLLDL--DNFKP 475

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG A GD VL  +  R+ +  +  D++ARL G+ F ++L   +N  +I  F   + 
Sbjct: 476 INDSLGYAAGDAVLQEVAARLRDTTRDGDLVARLGGDEFIVVLGGMDNRQEIDRFCARLI 535

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
             +  P+    + + + ASIG A   +    + E+++ A++A+Y AK  G +    F   
Sbjct: 536 GLLQQPVMFDSQPLHIGASIGIAQTRTQGFDAGELIRCADIALYQAKADGKSTWRYFASE 595

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++     R  ++ DL  A+ N E  L Y P  RL D  +V +EALI+W HP+ G +    
Sbjct: 596 MNQQIQYRRQLENDLRRALRNQEFELHYQPRYRLSDLRVVAVEALIRWQHPQEGLLGPDT 655

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I A+  ++L    R  + W        I + +N++    L +++ + ++ 
Sbjct: 656 FIPLAEQSDIIVALGRWVLHEACRTALDWPA-----DILVSVNLSPAQFLRSDVVQDVRE 710

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T +   R++L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL   
Sbjct: 711 ILLGTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNMDDFGTGYSSLGYLRTY 770

Query: 877 PFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           PFD++K +   ++G +       A++++II + K +  T+ A+ +  E  +  L    C 
Sbjct: 771 PFDSLKIDKRFISGLSTNGGSDRAVVQAIINLGKAMGLTVTAEGVETEQQLAMLQMDRCH 830

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q  +++ PL   ++  LL+ 
Sbjct: 831 EVQGYYLSRPLDTAAMRALLQR 852


>gi|119470796|ref|ZP_01613407.1| hypothetical protein ATW7_05636 [Alteromonadales bacterium TW-7]
 gi|119446023|gb|EAW27302.1| hypothetical protein ATW7_05636 [Alteromonadales bacterium TW-7]
          Length = 752

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 142/570 (24%), Positives = 261/570 (45%), Gaps = 17/570 (2%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + S  ER +L    V    D +  +D     V   P   T+ G           N   Y
Sbjct: 182 QLKSTEERLNLFAKCVESFTDALAIYDKNFKLVDINPSFLTLFGGMREQYLNKDFNLPGY 241

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               D      I+D         +Q E ++R  +     + I I  + N    I  Y+ +
Sbjct: 242 ----DTSYVENIIDVVRQ--TEHIQQEIKLRNNERVLLPIEISIDEIKNEQNQITNYVVV 295

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+TE+KK+   +   + +D  T +PNR  F   L  ++       +    ++V D+D 
Sbjct: 296 YSDLTERKKAESQLHNLSNRDRTTSLPNRNLFFTNLHKLV-----QQDAHHALLVFDLDN 350

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KKIND LG  +GD +L  L  R+ +L +  D+  RL G+ F +++ + N+   I   A 
Sbjct: 351 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSNTNDLHVITRTAK 410

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694
               +I+ P  +   E+ +T+S+G   +     T   +LKNA+ AMYHAK +G ++   +
Sbjct: 411 QFLAAISTPFKMAGHELAITSSVGIVLFPEDGNTPEVLLKNADTAMYHAKKKGNSYLFFN 470

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R+ I+  +   ++     + Y P + +   ++ G+EAL+++  PK G IS 
Sbjct: 471 DTMNRQAVKRLQIENLMRFGLKEDHFEVYYQPKMNIRTGKLTGMEALVRFITPKKGIISP 530

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE   I  I   +L +  RD+  W D        + +N+++K     +L   +
Sbjct: 531 GVFIPIAEETGQIIDIGEVVLNKACRDVKKWLDDGLFNG-RVAVNLSAKQFSLPDLTSRI 589

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ K       ++L  +E  VM +P  +  ++  L   GI L +DDFGT  S L+YL 
Sbjct: 590 DIILQKNALPSYFLELEITEGTVMDDPNEAINIMRSLSARGIHLAMDDFGTGYSSLAYLK 649

Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P +T+K + + +     E+   ++ SI+ +A N++  ++A+ +     I  L  + C+
Sbjct: 650 QFPLNTLKVDKAFIDDMKNERGRNMVDSIVTIAHNLDLHVVAEGVEQAHQIDILKTLNCE 709

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +Q  + + PL  +   + LK++      +
Sbjct: 710 TVQGYYYSKPLSKDEFTEFLKQQQSKATPS 739



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 20/146 (13%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIA----TILGLASGSMHGPIRNWLPYIHI 458
            +R    V GSGD +WDW+I    V            TI+G                IH 
Sbjct: 68  EKRLKSTVEGSGDTLWDWNIKTGEVIRINDKYMMNSPTIMGFPPN---------KGLIHP 118

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
            D  +   +L      +    +  +RV+    ++HW++ R + +  ++N   LR  G   
Sbjct: 119 QDIPHVEHLLKKHFAEQSVFFEATYRVKDTFGKWHWVLDRGKVIEKDANLAPLRMTGTVR 178

Query: 518 DITEQKKSLEGILCNA-----FQDNL 538
           DI++ K + E +   A     F D L
Sbjct: 179 DISQLKSTEERLNLFAKCVESFTDAL 204


>gi|326941459|gb|AEA17355.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 767

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 314/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 52  PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 111

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 112 EDHNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 171

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 172 HSIVRMQNNS------LTKRLQAFNAQLEEKVTVRTSDLVHKSEALSQKQQKFKSLYEYH 225

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 226 PDPIFTIDLNGTFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 283

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 284 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 340

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 341 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 399

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + + +     + E ++T+
Sbjct: 400 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 459

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 460 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 519

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 520 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 579

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 580 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 638

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 639 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 698

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 699 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 758

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 759 ELLEN 763


>gi|270156987|ref|ZP_06185644.1| response regulator/GGDEF domain/EAL domain protein [Legionella
           longbeachae D-4968]
 gi|289164595|ref|YP_003454733.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
 gi|269989012|gb|EEZ95266.1| response regulator/GGDEF domain/EAL domain protein [Legionella
           longbeachae D-4968]
 gi|288857768|emb|CBJ11612.1| regulatory protein (GGDEF domain) [Legionella longbeachae NSW150]
          Length = 750

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 132/569 (23%), Positives = 261/569 (45%), Gaps = 24/569 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457
            +             S D +   D+    +       ++  +    +       +   H 
Sbjct: 188 SLQQSLSILRSTFESSTDGILVTDLNYKIIDCNSRFVSMWAIPKAMLEIN-DGLIILYHM 246

Query: 458 ------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                       +   L+                   + +   +     P    +  I+ 
Sbjct: 247 LNQLFKP---KKYLEELNRLKKNINQISSTVVSF--KNGKT--LECYSLPHRLYD-VIIG 298

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +   +DITE+    + +   A  D LT +PNR   +DR+   +D +  +  L+  ++  
Sbjct: 299 RVWSFHDITERANLEKRLTYQALHDPLTQLPNRALLIDRIRASIDNAQ-NLKLKFAILYC 357

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND L   VGD +L  + +R G L++  DILAR+ G+ F ++    ++   + 
Sbjct: 358 DLDRFKLVNDSLSHEVGDTLLRMIGQRWGLLVQDGDILARMGGDEFVMLC-HIDDVDTVY 416

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  S+  P  +  R + +T ++G + +     T++++LKNA+LAMY AK +GGN 
Sbjct: 417 TIANKILNSLKEPFKITNRNLFITTALGISIYPQDGETANDLLKNADLAMYQAKEQGGNQ 476

Query: 692 VESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              + V  +       +++ +L  A+ N+E +L Y P   +  + ++ +EALI+W+HP+ 
Sbjct: 477 FSFYDVRLYEHYKQCFLLEAELHNALNNNEFFLAYQPQFNIDQQGLLSVEALIRWNHPEK 536

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I   +F+   EE  +I  I  ++L  + R I  W  +   P + + +NI S+ LL   
Sbjct: 537 GVIFPMDFIPFTEETGLIIPIGEWILREVCRQIDMWHKKNL-PYVQVAVNITSRQLLQPN 595

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + ++  +++   +P  ++   SE+VV+ +P+    +L +L+++GI + LDDFGT  S 
Sbjct: 596 FIDFVKNTLNEYQLNPHHLEFEISENVVITHPD-IIYMLNQLKQLGIKIALDDFGTGNSS 654

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           ++YL  +  D +K + S +     +     I+ +II MA++    +IA+ +  +  +  L
Sbjct: 655 INYLKQLHIDCIKIDQSFVQSIPTSHSDGVIIEAIISMARSFNFKVIAEGVESQEQLDFL 714

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  CD +Q    + PL    I K +K+ 
Sbjct: 715 KKQHCDQVQGFLFSEPLTPKEIEKYMKKH 743


>gi|229058393|ref|ZP_04196777.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228719902|gb|EEL71492.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 800

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 164/760 (21%), Positives = 306/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + I   F   + N  S           +    ++  
Sbjct: 56  ILFLSIGDVFLSFIFPIIDLLLLLLGISLIFRPAIFNAKSK----LFIFILVLTGLAITD 111

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     +  +       + ++   +           Y ++  +  +  L   
Sbjct: 112 YLYFYLQDDLSDRSLILLRCLYRVFLLLIAIAAAIPKNASSRRNYFIIDPTFGKKLLVIF 171

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 172 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNSD------LTEMLKVF 225

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +   V Q        S  +  + ER         D +   +     +      + +L
Sbjct: 226 NNQLEQKVSQRTEDLINKSNDLVKNQERFKSLYEYHPDPILTINSNGTVLNINQAGSMLL 285

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            DR      L          LQ   +     +   W  + 
Sbjct: 286 GKNSDELIGKEC--FSIFLDEDRSELEAALQEGKRCSSASLQLRVKNNNEKDIHFWY-VT 342

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  KK  + I   AF D +T I NR  F   L   ++ +
Sbjct: 343 IVPIM-IEGQTFGSYVMVKDITRMKKQQDEINYLAFHDTVTEIGNRIFFQKELEKSIERA 401

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 402 RKTQG-EFGLLYIDLNRFKTINDTLGHSIGDSVLKEVAKRFRTCLSPAIPLARIGGDEFA 460

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ +     ++ D    + +       + +    ++ SIG A +    I ++ +L++A+
Sbjct: 461 IIVHNHT-EQQLLDLCETLFRITEEAFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 519

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P +      ++
Sbjct: 520 IAMYSAKEKGNNAVCMYDETLSKKITRRLRLEQDLPNALENNELFLLYQPQVDSKAGMVI 579

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L+   R +  W        + +
Sbjct: 580 GAEALIRWQHPELGLISPFEFIPIAEETSQIISIGKWTLQEACRQLKEWHSA-GYSNLKM 638

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     S I L  +E + M + + +   L  L+  G+
Sbjct: 639 GINLSAIEFEQKDFVQTIISTIEEVGVPASSIDLELTERIAMVDEKETLAKLKALKSYGV 698

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+ +II +A  +   +I
Sbjct: 699 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGNSTDGNEIIHTIISLAHTLNMKVI 758

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +K L 
Sbjct: 759 AEGVETKEQLTVLQRNACYLIQGYYYSKPVSEDEFIKFLS 798


>gi|284041657|ref|YP_003391997.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283945878|gb|ADB48622.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 740

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 126/602 (20%), Positives = 261/602 (43%), Gaps = 12/602 (1%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
             T R     I    +GG               V ++   ++ +  + +R    +  +  
Sbjct: 136 TETGRERWITILARPIGGAHGTSRRGVVCTFADVTSSVEAARRLREERDRAQHYLEVAST 195

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYR 475
           +V   D              +LG A   + G  R+W    +   DR + R +    +   
Sbjct: 196 LVVVLDAGGRVELVNRQGCELLGYAEHELVG--RDWNETVVPPGDRRDARAVFAQLLAGE 253

Query: 476 RGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    + E  +     +   +  R   + ++ G +   +    D+TE++++   +   A 
Sbjct: 254 QLPAERGETFLLTKAGEERKIAWRNAVVRDATGTVASVLCSGEDVTERRRAEAQLAYLAH 313

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR    ++L   L  +         ++ + +D +K +ND LG A GD VL  
Sbjct: 314 HDRLTGLPNRAPLEEQLQRDLARARRTGG-SVALVQVGLDNFKLVNDSLGHAAGDAVLSE 372

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLK--IADFAIAMRKSIAMPINLLEREI 652
             +R+ +L +  D++AR  G+ F ++L       +         +  ++  P  +   E 
Sbjct: 373 TAQRVAQLTRAGDVIARQGGDEFMLLLDCGAEEAQVVAQLAGDRVMAALEQPFAVAGAEF 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVMIKEDL 711
            + ASIG A +  +   +  + K+A++AM+ AK  GG  V  +   ++   +R+ +   L
Sbjct: 433 HIGASIGIALFPGNANNAESLFKHADMAMHQAKRSGGGAVVFYERGAAEARERLSLTSRL 492

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++  EL L + PI R+ D  +V +EAL++W+ P+ G +  + F+ +AEE  +I+ I 
Sbjct: 493 RRAIDGDELRLHFQPIYRVEDGVLVAVEALVRWEDPEHGLVPPAGFIPVAEETGLIEGIG 552

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++E + R    W  +   P   +  N++ + L   +L + +   I++    P +    
Sbjct: 553 SWVVEALCRQASRWAREGFRP--RLCFNLSPRQLRQPDLVDSIARTIARHELPPGQFCAE 610

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+ V+ +  R   LL  L + G+++ +DDFG+  S L+ L  +P   +K + S +   
Sbjct: 611 LTETAVLSDERRHSSLLDELHEAGLAIAIDDFGSGHSSLARLRDLPVQVLKVDRSFLRRV 670

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI+ +++ +   +  T + + +  +  +  L R G    Q   +  P+  + +
Sbjct: 671 PEDPGSTAIVAAVLELGTALGMTTVVEGVEDDAQLALLRRHGAPLAQGFLLGRPVPADQL 730

Query: 950 LK 951
            +
Sbjct: 731 DR 732



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 47/173 (27%), Gaps = 22/173 (12%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             L+   ++          Q + +        V G  + V   D     V+    +  IL
Sbjct: 22  GRLVSRGLVVDAAPQQRARQALRAAERLSRAVVDGLEEGVLVLDANLHPVSWNASVLRIL 81

Query: 439 GLASGSM-----HGPIRNWLPY-------IHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           G+    +            +         +   D    R++           ++      
Sbjct: 82  GVTPEQLADVEQLAQAPATMSLRYDSGKPVTPRDNPALRSLRH------GAPVRATLHRE 135

Query: 487 AADNQFHWMIIRIRPMSNSNGDILR-YIGIANDIT---EQKKSLEGILCNAFQ 535
               +  W+ I  RP+  ++G   R  +    D+T   E  + L      A  
Sbjct: 136 TETGRERWITILARPIGGAHGTSRRGVVCTFADVTSSVEAARRLREERDRAQH 188


>gi|330501334|ref|YP_004378203.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915620|gb|AEB56451.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 1274

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 138/572 (24%), Positives = 254/572 (44%), Gaps = 21/572 (3%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                   R    V  + + +  ++     V    +   +       + G     +  +  
Sbjct: 710  ARQEAEARYRTLVEHAPEAILLFNPDGGIVECNENALRLFRYRREELLGRSIQSISPLRQ 769

Query: 459  NDRDNFRTI----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             D           +   V       ++  R   +  +     +R+  M    G+ L    
Sbjct: 770  ADGRLSSRAGKTFMRQAVAGEAPVFEWNHR--DSAGRQLPCEVRLVRMP---GEGLLIRA 824

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               DI+E+++    I   A+ D LTG+PNR+  LDRL   +D    + +L   ++ ID+D
Sbjct: 825  SVTDISERQRYQREIERLAYSDELTGLPNRRLLLDRLQHAMDRENREGSL-GALLFIDLD 883

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629
             +K +ND LG  VGD +LV +T R+   L+  D LARL G+ F ++L +  +        
Sbjct: 884  HFKTVNDSLGHLVGDALLVEVTTRLARELRTEDTLARLGGDEFVVLLEALGSEPQAVAEH 943

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             A     + + +     +   E+ ++ASIG A        +S++LK A+ AMY AKH G 
Sbjct: 944  AAAVGEKLLRGLQGSCLIDGHELAISASIGIALHPMGLQRASDILKQADTAMYRAKHAGR 1003

Query: 690  NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            N +  F          R+ ++ +L  A+   +L LV+ P + L D+ + G E L++W HP
Sbjct: 1004 NALHFFAPEMQAAIDQRLQLQGELRQAIARQQLQLVFQPQLTLSDDRVAGAEVLLRWMHP 1063

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            + G I   +F+ +AEE  +I+ I  ++LE+    +  W+ Q   P + + +N++ ++L  
Sbjct: 1064 ERGEIGPDQFIPLAEETGLIQDIGQWVLEQACATLARWQAQ--WPQLVLAVNLSPRELRQ 1121

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                E ++  +         ++L  +E V++ + ER    + RL+  G+   +DDFGT  
Sbjct: 1122 AGCVERVEQCLRAHGVPAHALELEITEGVLLEDVERCIGNMQRLKAQGVRFAIDDFGTGY 1181

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S L+YL  +P D +K + S +           ++++I+ +A+N++   +A+ I     + 
Sbjct: 1182 SSLTYLKRLPLDRLKIDRSFVADLDGAASGRMLVQTILMIARNLDLECVAEGIEQPSQLA 1241

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             L   GC   Q      P+     L  L+ R 
Sbjct: 1242 LLREQGCALGQGYLFGKPMDEAEFLAWLQARQ 1273



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 101/332 (30%), Gaps = 24/332 (7%)

Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL------IWRACSEIALSSSLIIFLFM 271
            +    +    L    +          +            +    + +AL++ L+ F   
Sbjct: 136 FLAFAVLMPATLVAFGLQSNLWLTGFQVSEHWAQASLAVWLSDTINLLALTAPLLAFCTP 195

Query: 272 YLHWNRWHAK-------VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
           +L    W             ++ S    +           +     A++ L  + L    
Sbjct: 196 WLRRRGWLRTRSSVVAPALPVSRSLAGWLLATSVFLVLMLLSAGLPAQLALPLLGLSMLV 255

Query: 325 FIIYHGMKGYERAVLLIPAWILIF-IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             + H   G    VLL+ A  L   +W   L  A      N +    L+     +V+   
Sbjct: 256 LALRHAFAGALYGVLLVFAATLPLPLWRGSLSFAELDLQRNQLHFAVLLLMGATLVVGRA 315

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTTPDIATILGL 440
            + ++  LA       +     R +LA+  S   V   D  +     V      + I G 
Sbjct: 316 LSDLRQALARSA---QMQRQLARANLAMEASPLGVTIADARQPDLPLVYCNSAFSQITGY 372

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            +    G    +L  +  +        L + +   R       R    D +  W  + + 
Sbjct: 373 RADEALGRNCRFL--LGKDRVQLELQPLRAALRDGRSG-HAVVRNYRKDGKPFWNEVVLA 429

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           PM +  G I  ++G+ +D+TE+ +    +   
Sbjct: 430 PMRDEQG-ISHFVGLQHDVTERVELAAKVEQQ 460



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 2/156 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++  + V+Q +         +    ER  L        +               + +ILG
Sbjct: 571 LVRIYGVVQDISERKRTESQLRERDERLRLFFEAPLIGMALTTQSFGWEEVNQKLCSILG 630

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   +     +W    H +D    +  L+  +       + + R   AD Q  +  + +
Sbjct: 631 RSRDEVLAS--SWQQLSHPDDLPAEQASLEQVLLGSSDGFEMDKRFLRADGQVVFTRVSL 688

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R +   +G    ++ +  DI+ ++++          
Sbjct: 689 RAVRGGSGRQAIFLLLVEDISARQEAEARYRTLVEH 724



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 87/341 (25%), Gaps = 23/341 (6%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           +V              +++   ++        ++    +L   +    + L     + + 
Sbjct: 254 LVLALRHAFAGALYGVLLVFAATLPLPLWRGSLSFAELDLQRNQLHFAVLLLMGATLVVG 313

Query: 271 MYL-HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
             L    +  A+   +          +        +  A    + L      ++    Y 
Sbjct: 314 RALSDLRQALARSAQMQRQLARANLAMEASPLGVTIADARQPDLPLVYCNSAFSQITGYR 373

Query: 330 GMKGYERAVLLIPAWILIFIWF---------------IGLWMAITKRLDNDIIQPAL--- 371
             +   R    +     + +                 +        +   + +  A    
Sbjct: 374 ADEALGRNCRFLLGKDRVQLELQPLRAALRDGRSGHAVVRNYRKDGKPFWNEVVLAPMRD 433

Query: 372 -VGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
             G    + +    T    + A     +  +       S     +    W  +     + 
Sbjct: 434 EQGISHFVGLQHDVTERVELAAKVEQQRSQLLRQSHLFSQTEDIANLGGWVLETSDYSMF 493

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
            +     I+          +R  L Y     +      L +        L  E R+ A  
Sbjct: 494 WSDGCYRIVDRDIQQGPPDLREVLDYYDTPSQALIMQTLQAASSGM-DDLDIEVRLVARL 552

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                + +R     + +G ++R  G+  DI+E+K++   + 
Sbjct: 553 GG-RLVRLRGMAERDEDGSLVRIYGVVQDISERKRTESQLR 592


>gi|229110945|ref|ZP_04240506.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|228672526|gb|EEL27809.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
          Length = 785

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 168/782 (21%), Positives = 316/782 (40%), Gaps = 36/782 (4%)

Query: 192 RGIIIGVASLLAIFLT------IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
             I++     L  +L       I ++      L   F +  ++L  + +   F   + N 
Sbjct: 16  LYIVVTAIFTLEWYLFNKPSANILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNA 75

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS----- 300
            S           +    ++  +L+ YL  +     V ++       +  +   +     
Sbjct: 76  KSK----LFIFILVLTGLAITDYLYFYLQDDLSERSVIFLRCLYRVFLLFIAIAATIPKN 131

Query: 301 ----FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
                 Y ++  +     L          +I   +K    +  LI    + F++ +    
Sbjct: 132 TSSKRNYFIINPTFGEKLLGIFPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHT 191

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +  +         L   L +    +  TV Q        S  +  + ER         D
Sbjct: 192 IVRMQNKE------LTKTLKVFNNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPD 245

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +   D     +      + +LG  S ++ G            D+      +        
Sbjct: 246 PILTIDSNGIVLNINQAGSMLLGKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSS 303

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
             LQ   +     +   W  + I P+    G       +  DIT  K+  E I   AF D
Sbjct: 304 SSLQLRVKNNNEKDILFWY-VTIVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHD 361

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T I NR  F   L   +  +    + +  ++ ID++++K IND LG ++GD VL  + 
Sbjct: 362 TVTEIGNRIFFQQELDRSIKRAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVA 420

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +R    L     LAR+ G+ F II+ ++    ++ D    + +    P  + +    ++ 
Sbjct: 421 KRFRTCLSPTIPLARIGGDEFAIIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSL 479

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA 714
           SIG A +    I ++ +L++A++AMY AK +G N V  +    S   + R+ +++DL  A
Sbjct: 480 SIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNA 539

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN+EL+L+Y P I     +++G EALI+W HP+ G IS  EF+ IAEE   I +I  + 
Sbjct: 540 IENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWT 599

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L++  R +  W        + + IN+++ +    +  + M + I +     + I L  +E
Sbjct: 600 LQKACRQLKEWHSA-GFSNLKMGINLSAIEFEQKDFVQTMISTIEEIGVPANSIDLELTE 658

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
            + M +   +   L  L+  G+ L++DDFGT  S L+YL   P DT+K     +     +
Sbjct: 659 RIAMVDERETLSKLKALKSFGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTS 718

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                I+++II +A  +   +IA+ +  +  +  L R  C  IQ  + + P+  +  +  
Sbjct: 719 TDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQRNVCYLIQGYYYSKPVNEDEFIGF 778

Query: 953 LK 954
           L 
Sbjct: 779 LS 780


>gi|226357499|ref|YP_002787239.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319490|gb|ACO47485.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 764

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 151/658 (22%), Positives = 278/658 (42%), Gaps = 41/658 (6%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             + G           + +        +A+      D +       L  +  LI      
Sbjct: 105 ASVAGPPHLRFYAGVPLTLESGLTVGTLAVMDTSPRDGLTEHQAHLLGHVASLI--VEQL 162

Query: 389 HVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           H        QG+    ER     +    D+V+  D            + + G  + S  G
Sbjct: 163 HARRETARQQGL----ERLHHDVIHNVQDVVFQTDSRGCWSFLNSAWSRLTGHDTQSSLG 218

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                L +IH +D+   +    + +  +    +   R   A   F W  +  R + +S G
Sbjct: 219 RSA--LEFIHPDDQAQVQQAFGTVLTGQAATCRQHVRHVTAGGAFAWFDVYARAVHDSQG 276

Query: 508 DILRYIGIANDITEQKKSL-------------------------EGILCNAFQDNLTGIP 542
            +    G   DIT  K++                               +A +D LTG+ 
Sbjct: 277 RVTGAAGTLRDITGAKQAELHLRAEKADLERRVREHTHELAQLSAQAQHDALRDPLTGLG 336

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F  RL  +L+        R  V+++D D++K++ND  G + GD++L  +  R+   
Sbjct: 337 NRTMFQHRLRGLLEDGW--PARRAAVVLLDCDRFKQLNDTFGHSAGDELLRLVAGRLARE 394

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++ PD L+RL G+ FG++L   +           + + +     +  RE  V  S G   
Sbjct: 395 VRGPDTLSRLGGDEFGLLLGGVDTPEMALGVMQRVLRVVQQTATVQGREWPVQVSAGVVL 454

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
                    E+L+NA++A+ HAK R  + VE F+VS   +      +++DL  A+ N +L
Sbjct: 455 LHDQDHAVDEVLRNADIALCHAKRRTRDKVEVFKVSMHTALLARTELEDDLRQALRNGDL 514

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +  Y P++R+ D  +VG EAL +W+HP+ G IS +EF+ +AE+  +I  ++  + E+   
Sbjct: 515 HPHYQPLVRVQDGHLVGFEALARWNHPERGPISPAEFIPVAEDSGLIIDLDRAIFEQACA 574

Query: 781 DIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               W+    M  P+ +  N +++  L  +    +QA +++T  S + + L  +ES+++ 
Sbjct: 575 QYQQWQAAGLMSAPLTLSSNASARQFLLPDFAPFVQATLARTGLSANLVHLEITESLILE 634

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
                   L  L+ +G+ L +DDFGT  S L+Y+  +    +K + S        E    
Sbjct: 635 QSHVVTANLAALQALGVHLHIDDFGTGYSSLAYVQRLAASALKIDRSFTNRIGQAEAGEE 694

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++R+I+ MA+ +   ++A+ +  +     L  +GCD  Q  H + PL       L++ 
Sbjct: 695 LVRAILGMARALGMHVVAEGVETDEQWVWLREVGCDLAQGFHFSRPLAALDAEALVQR 752


>gi|254561421|ref|YP_003068516.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254268699|emb|CAX24658.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens DM4]
          Length = 777

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 145/549 (26%), Positives = 247/549 (44%), Gaps = 29/549 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                  +   +W  D      V          G +  +                     
Sbjct: 242 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 286

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   V +   R     R R AD     + +  R ++   G     +G A D+TEQ+++
Sbjct: 287 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 344

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   A  D LTG+PNR  F  RL   +   A        ++ +D+DK+K +ND LG 
Sbjct: 345 EARITHMAHHDALTGLPNRALFTTRLAAAITEHART-GAGAALLCLDLDKFKLVNDTLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L ++  RI   L   D++ARL G+ F ++L    ++  ++  A  + ++++ P+
Sbjct: 404 PAGDTLLRAVAERITACLHGEDLVARLGGDEFAVLLR-TPDAGTVSAVAGRIIEALSHPV 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +RE  +  SIG A        S  +L++A+LA+Y AK  GG+    F  +    DR 
Sbjct: 463 RLGDRECQIGVSIGIACLPEHGTDSDTLLRHADLALYRAKADGGSIAHCFEAAMDSWDRS 522

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               + DL  A    +L L Y P++ +    IVG EAL++W HP  G I  SEF+ +AEE
Sbjct: 523 RRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEE 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L +   +   W D     P+ I +N++     D  L   ++  ++ +  
Sbjct: 583 TGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALAFSGL 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P R++L  +ESV++   E +   L  LR +G+ + +DDFGT    LSYL   PFD +K 
Sbjct: 638 APHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKI 697

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++  G      AI++++I +  ++    +A+ +  E+    L   GC+ +Q     
Sbjct: 698 DRSFVSRLGEDPHSTAIVQAVIGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLFG 757

Query: 942 SPLGFNSIL 950
            P+     +
Sbjct: 758 RPIPAPQAV 766


>gi|229168485|ref|ZP_04296208.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|228614891|gb|EEK71993.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 883

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 157/724 (21%), Positives = 316/724 (43%), Gaps = 26/724 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     + ++       I ++       
Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 228 EDDNSHKNHFIVNPILGKKVLVVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  R+ ND +   L          +   V        + S+ +    ++        
Sbjct: 288 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T  +    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   +      + +++  P  + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDYDSLFKLCNQLFENMKKPFVIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG + +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSGSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++  + +  W        + I +N+++K+       + + + ++ T    S + L  
Sbjct: 696 WTLQQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIYANAFT 874

Query: 951 KLLK 954
           +LL+
Sbjct: 875 ELLE 878


>gi|239904849|ref|YP_002951587.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239794712|dbj|BAH73701.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 725

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 152/594 (25%), Positives = 273/594 (45%), Gaps = 35/594 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQS----------LAVL---GSGDIVWDWDIVRDRVTTT 431
           T ++  L   +  Q +    +R            L +    GS     D++I+       
Sbjct: 147 TAVEVALFKHHTEQELRRSEKRYRELFSAMLNAFLLLRHCPGSSQGQDDFEILG----AN 202

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           P       L++  + G  +R  LP I       +   L +     R      F    +D 
Sbjct: 203 PAFERATSLSNDEIVGHTLRQTLPGIEP----FWIDTLAAVAATGRP---VRFENYLSDL 255

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
             +++     P         +      D+TE+K+  E +    F D LTG+PNR   LDR
Sbjct: 256 NMYFLAQAYSP------QPGQVAVALEDVTERKRGEERLRYRTFHDALTGLPNRALCLDR 309

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +   ++ +    N    ++ +D+D++K +ND LG  VGD +L  +  R+   ++  D +A
Sbjct: 310 IARAIERAKRRSNYIYALLFLDLDRFKLVNDSLGHLVGDGLLRRVADRLRREVRQLDTVA 369

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F ++L    +         A+R+ + +P  +  R+I VTAS+G     +     
Sbjct: 370 RVGGDEFVVLLEEIASPGDALRIVKAVRERLRVPFVVDGRQIYVTASLGVVLGPADYERP 429

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPII 728
            E+L+NA +AM  A+  G   V  F  S        + ++ +L   +   E  L Y PI+
Sbjct: 430 EELLQNAAIAMNAARSAGCGRVRVFDWSMRERAERVMDLETNLREGLVRDEFVLHYQPIL 489

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD- 787
            L    + G+EAL++W       +   EF+  AE+  +I  +   +L    R +  WR  
Sbjct: 490 DLATRRLRGVEALVRWRRVDGELVPPGEFIPAAEQSGLIIPLGAVVLTEACRALARWRAG 549

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P F+ +N++++     +L + +   + +   +P+ +KL  +ESV+M +PE + L 
Sbjct: 550 SLGDSPFFMAVNLSARQFTQPDLVKQVVTALRREAMAPADLKLEITESVLMEHPESAMLK 609

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMA 906
           L  LR++G+S+ +DDFGT  S LSYL   P DT+K + + ++G  E+    I+RS++ +A
Sbjct: 610 LRGLRELGVSIGIDDFGTGYSSLSYLQRFPIDTLKVDRAFVSGMEEQGNRVIVRSVVSLA 669

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            N+   ++A+ I     + +L+R+GCD  Q    A P+  + I+ LL  + P  
Sbjct: 670 HNLGYDVVAEGIETAAQLDDLSRLGCDMGQGFLFARPMEESGIVALLDRQDPPA 723


>gi|307942753|ref|ZP_07658098.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
 gi|307773549|gb|EFO32765.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
          Length = 900

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 155/632 (24%), Positives = 287/632 (45%), Gaps = 24/632 (3%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            +P + L  +    +  AI  RL +  +   +     L       +  +           
Sbjct: 263 FLPPFTLTVLVACVIASAILHRLISPSLSYLIAYAHELRQGRANRSHQKSRFQEFNTLAT 322

Query: 400 IFSDG--------ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG---SMHGP 448
           +FSD          +    + GS   V+     +  +     +  +LG  SG    + G 
Sbjct: 323 LFSDAFEANQRTNAQFRDLIDGSLQGVFVH-ANKHILYVNNALLEMLGYESGNKKQLVGK 381

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                      +      +             YE R +  D    W+   +R +S  NG+
Sbjct: 382 PVT--DLYAKEEHRQLNQVYKLRADGGTAPRIYEARAQRQDGSVVWLEQHVRMISW-NGE 438

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              Y     DIT++K+  + I  NA  D++TG+PNR  FLDRL   +  +    + + T+
Sbjct: 439 EAFY-ATVLDITDRKRQEQQIALNANYDSVTGLPNRYLFLDRLKQAIGRAQ-SKHEKCTL 496

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K IN+ LG   GD +L ++  R+ ++L   +  ARL G++ G++L +  +S 
Sbjct: 497 LFLDVDRFKSINETLGHEAGDQLLANIAWRVQQILGPSESAARLGGDQIGVLLNTVKDSW 556

Query: 629 KIADFAIAMRKSIAMPINLLEREITV-TASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                A+ + ++++           + TAS+G A   +       +L++AE AM+ AK  
Sbjct: 557 DAEQKALGLLEAVSAARPGDVETNHLATASVGIAIGPADGDNPDLLLRHAEFAMFQAKLE 616

Query: 688 GGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN    +        +  + ++  L  A++  +L L Y PI+     +I+  EAL++W+
Sbjct: 617 GGNRCRFYSHERNDAATRAMKLEFALTSAIDQKKLKLHYQPIVDFESGQIISCEALLRWN 676

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P++G+I+ SEF+ IAEE  +I  +  ++L+         + +       I +N++ +  
Sbjct: 677 DPEFGDITPSEFIPIAEETGLIVPLGDWVLQEACSFFKDCKKRGLDLQC-ISVNVSPRQC 735

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFG 864
            D+     +  +I++T  +PS++ L  +E+V+M +      ++L  LR IG+ L+LDDFG
Sbjct: 736 RDDGFVSRVAQVIAETRIAPSQLHLEITETVMMDDSSIDPAMVLDALRDIGVKLSLDDFG 795

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL  +P D +K + S +      E+   ++R+I  MA+N+  T+I +      
Sbjct: 796 TGYSSLSYLKRLPIDILKIDSSFILDLEEDEEDQVLIRAIRSMAENLGITVICEGAETAP 855

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             + L  +GC  IQ  H+A P+     +  L 
Sbjct: 856 QCRILADLGCQLIQGYHIARPMPERDFIHFLT 887


>gi|161521080|ref|YP_001584507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia multivorans ATCC 17616]
 gi|160345130|gb|ABX18215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia multivorans ATCC 17616]
          Length = 776

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 132/567 (23%), Positives = 249/567 (43%), Gaps = 13/567 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452
             +Q +    E   L V    + +         + + P    +L  A G + G   +   
Sbjct: 208 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELVGRRMSTVI 266

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509
           L  +  +      +       +      L Y      AD    W+     P+    +   
Sbjct: 267 LRKLSEDGTPIAPSRWPSRRALTSGTPVLDYTVGFGLADGDVIWVRGNAVPIVKPGDTQA 326

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTV 568
              +   +DI   +++ + +   A +D LTG+ NR+   DR+  +           R  +
Sbjct: 327 ASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAI 386

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+  +KK+ND  G   GD +L S+  R+   ++    L R+ G+ F I++   ++  
Sbjct: 387 LFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPE 446

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  +  +IA P  +   E  +  SIG +        ++ +++NA+ AMY AK RG
Sbjct: 447 ALAALAREVIDAIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRG 506

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            NH   F        +    I++ L  A+ ++ L L Y P++       VG EAL++W  
Sbjct: 507 RNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTGRTVGAEALLRWTS 566

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +   
Sbjct: 567 PELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFH 625

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E +   +++T   P  ++L  +E V+M +      +L  L ++ + +++DDFGT 
Sbjct: 626 D-GLVESVSRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTEMNVRISVDDFGTG 684

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  E   
Sbjct: 685 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQS 744

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
             L ++GCD  Q    + PL      +
Sbjct: 745 WFLQQIGCDMQQGYLFSRPLDPVDYAR 771


>gi|229174176|ref|ZP_04301711.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228609297|gb|EEK66584.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 781

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 156/774 (20%), Positives = 301/774 (38%), Gaps = 54/774 (6%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++           +  + ++  + +  G                     +    S+  
Sbjct: 37  ILFLSIGD----VFLSFIFPIIDLLLLLLGVSLIFRPAIFNAKSKLFIFILVLTGLSITD 92

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +  H  +  +       +  +  ++   P  T+S     + +        +I
Sbjct: 93  YLYFYLQDDLSHRSLILLRCFYRVFLLFI-AIAATIPRSTSSRRDYFIINPTFGKKLLVI 151

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +                       I +     ++  +  +        V ++I      +
Sbjct: 152 F-----------------PYLSVAILIGFTFKEQTSSSTLITGNCIAFVFVLIRHTIVRM 194

Query: 388 Q---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           Q                             S  +  + ER         D +   D    
Sbjct: 195 QNKDLTETLKVFNNQLEQKVSKRTADLIKKSNDLVKNQERFKSLYEYHPDPILTIDSNGT 254

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      + +LG  S ++ G            D+      L   +G R      + RV+
Sbjct: 255 VLNINQSGSMLLGKDSAALIGKEC--FSIFLDEDKPELEVALK--MGKRCSSSALQLRVK 310

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +               G       +  DIT  K+  + I   AF D +TGI NR  
Sbjct: 311 NNNEKDIHFWYVTIVPIMIEGQTFGSYIMVKDITRMKQQQDEINYLAFHDTVTGIGNRIF 370

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L   ++      + +  ++ ID++++K IND LG A+GD VL  + +R    L   
Sbjct: 371 FQQELDRSIERVQKTQD-KFGLLYIDLNRFKTINDTLGHAIGDSVLKEVAKRFRTCLSPA 429

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             LAR+ G+ F II+ ++    ++ D    + +    P  + +    ++ SIG A +   
Sbjct: 430 IPLARIGGDEFAIIVHNKT-EQQLLDLCEILFRITEEPFVINQHSFYLSLSIGIALYPFG 488

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724
              ++ +L++A++AMY AK  G N V  +    S   + R+ +++DL  A+EN+EL+L+Y
Sbjct: 489 GTNATTLLQHADIAMYSAKEEGSNAVCIYDETLSLKITRRLQLEQDLPNAIENNELFLLY 548

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P +     +++G EALI+W HP+ G IS  EF+ IAEE   I  I  + L++    +  
Sbjct: 549 QPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIITIGKWTLQQACSQLKE 608

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + IN+++ +    +  + + + I +     + I L  +E + M + + +
Sbjct: 609 WHSA-GYTNLKMGINLSAIEFEQKDFVQTIISTIEEIRVPANLIDLELTERIAMVDEKET 667

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
            L L  L+  G+ L++DDFGT  S L+YL   P DT+K     +     +     I+++I
Sbjct: 668 LLKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSNDGDEIIQTI 727

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +A  +   +IA+ +  +  +  L +  C  IQ  + + P+  +  LK L   
Sbjct: 728 ISLAHTLNMKVIAEGVETKKQLTVLQQNACYLIQGYYYSKPVNEDEFLKFLSRE 781


>gi|297528808|ref|YP_003670083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
 gi|297252060|gb|ADI25506.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. C56-T3]
          Length = 818

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/599 (23%), Positives = 269/599 (44%), Gaps = 23/599 (3%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            R        A+     +  +L     ++   A   + + + S+  R       + + + 
Sbjct: 231 GRKQAMWTMMAMFLASAVAYLLALHQQMERK-ALAVYKKTLASNEHRLRRLAEMTMEGLI 289

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            +      V     +  +LG +   +                +                 
Sbjct: 290 VY-AHGKVVEVNEAVCRLLGYSESELIHLPIG----------ELVVDGSMKLNRPHEEPE 338

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E  +R  D       I +R   +  G+ +  +    D+TEQK++ E +   A  D LT
Sbjct: 339 RLEIELRRKDGTTFPAEI-VRRRYDYEGEKV-TVAAVRDLTEQKQNEERMRYIANHDELT 396

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PN+++    +   L  +    +    V+ +++   K IND  G AVGD+VL+ L +  
Sbjct: 397 GLPNKEAMYKAVERCLVEAKQHRH-EAAVIFLEVSGMKTINDFYGYAVGDEVLLHLAQEW 455

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            E  K    + R SGN F  ++ +  +  K  + A  + ++   PI +   E+ VT +IG
Sbjct: 456 KE--KQGMTVGRWSGNEFIALVPNSTH-QKAEEMAKQLIEAADEPIVVNGMELYVTVNIG 512

Query: 660 FASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
            + +      +  +++ A++A Y A  K        +  ++   ++++ ++ DL  A+EN
Sbjct: 513 ISVYPKDGEDAKTLIRKADIARYEARKKAASDFLFFTEPMAIRLNEKMAMERDLRRALEN 572

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P IRL D +++G+EALI+W HP+ G +S S F+ +AE+  MI  IN +++  
Sbjct: 573 EEFELYYQPQIRLHDRQVIGMEALIRWRHPEKGMVSPSLFIPVAEQTGMIIPINEWVIRT 632

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                    D+   P + + IN++  +       + +  L++     P  + L  +E + 
Sbjct: 633 ACEQTKQLLDRF--PDLSVSINLSPYEFESRRFVDKLARLLADAGLPPHHLDLEITERMT 690

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897
           M + ER+  +L +L+ +G+++++DDFGT  S LSYL  +P D +K + S +     K+  
Sbjct: 691 M-DTERALDILSKLKGLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDV 749

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           IL +II +  NI   ++A+ +  E +   L    CD  Q  + + PL ++ +++ L E+
Sbjct: 750 ILPAIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYDELVRFLNEQ 808


>gi|39933467|ref|NP_945743.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|192288826|ref|YP_001989431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|39647313|emb|CAE25834.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains [Rhodopseudomonas palustris CGA009]
 gi|192282575|gb|ACE98955.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 745

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 147/573 (25%), Positives = 242/573 (42%), Gaps = 30/573 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +    +     +          G +                
Sbjct: 180 ELKQREASFRLMFESNPVPMIVCAVNDERILAVNDAAVEHYGYSPSEFASLTI------- 232

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512
                      ++ + +       E   R      AD     + I  R ++  NG+    
Sbjct: 233 -----RRLQAFETELPWAGNHTHEERTARTWKHVKADGSLIDLAIYSRQLT-YNGEPAVL 286

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DITE+K++   +   A  D LTG+PNR S   RL  +L  +      +  V+ + 
Sbjct: 287 LALM-DITERKRAEMRLAFMAHHDGLTGLPNRNSLRKRLDELLIQTRRTGE-KIAVLFVG 344

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +K +ND LG AVGD +L  + RR+   L+  D LARL+ + F +I         I  
Sbjct: 345 IDNFKAVNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDIVL 404

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +IA P  L    + V ASIG A        S ++L NA++A+  AK       
Sbjct: 405 LAKRLLHAIAEPYLLQGHSVVVGASIGIAVAPGDGDDSEKLLMNADMALSRAKKDTRGTF 464

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   + +    R  I+ DL  A+++  L   Y P++RL D  I G EAL++W HP+ G
Sbjct: 465 SFFEVGMDARAQARRKIETDLRAALQHEVLRPYYQPLVRLADGRITGSEALVRWPHPERG 524

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS +EF+ +AE+  +I AI   +L     D   W D      + + +N++        L
Sbjct: 525 MISPAEFIPVAEDTGLINAIGAQILRSACMDAARWPD-----DVRVAVNLSPLQFRVGNL 579

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   + ++   P R++L  +E++++    +    L  LR +G+ +++DDFGT  S L
Sbjct: 580 LSVVMDALKQSGLPPRRLELEITETLLLEKSSQVLATLHALRALGVRISMDDFGTGYSSL 639

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   PFD +K + S + G  + R   AI+RSII +   +  TI A+ +  E ++  L 
Sbjct: 640 SYLRSFPFDKIKIDQSFVRGLCDNRESQAIVRSIISLGNGLGVTITAEGVESEAELSWLR 699

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             GC   Q    +       I  LL  +     
Sbjct: 700 AEGCQEAQGFLFSQARPNAEITGLLDLQQSGAS 732



 Score = 42.2 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 15/149 (10%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-HGPI 449
            A     +       R   A+      +   D     +      A I   ++     G  
Sbjct: 51  RAVAAALEEARRSHARLREAIDILPQGIVFLDAEGRYILWNKRYAEIYKASADQFSPGAR 110

Query: 450 RNWLPYI------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                 I      +          +   +           +V  AD +   +  R     
Sbjct: 111 IQDTMRIGIARGDYPEAEGREEEWIAERLQRMFNPGSSHEQVL-ADGRCIQIEERTT--- 166

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
            S+G     IG+  DITE K+        
Sbjct: 167 -SDG---GIIGLRVDITELKQREASFRLM 191


>gi|332535236|ref|ZP_08411040.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035317|gb|EGI71820.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 750

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 144/570 (25%), Positives = 266/570 (46%), Gaps = 17/570 (2%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + S  ER +L    V    D +  +D     V   P   T+ G       G   + L  
Sbjct: 181 QLKSTEERLNLFAKCVESLTDALAIYDKNFKLVDINPSFLTLFGGVREQYLGKDFS-LSG 239

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +  +    I+       R  +Q E ++R ++     + I I  + N    I  Y+ +
Sbjct: 240 YEPSYTNRIIEIVKE-----REHIQQEVKLRNSERILLPIEISIDEIKNDQNQITNYVVV 294

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+TE+KK+   +   + +D  T +PNR  F   L  ++ L     N    ++V D+D 
Sbjct: 295 YSDLTERKKAESQLHNLSNRDRTTSLPNRNLFFTDLQKLVKL-----NSHHALLVFDLDN 349

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KKIND LG  +GD +L  L  R+ +L +  D+  RL G+ F +++   N+   I   A 
Sbjct: 350 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSDTNDIHVITRMAK 409

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694
               +IA P  +   E+ +T+S+G   +     T   +LKNA+ AMYHAK +G ++   +
Sbjct: 410 QFLAAIATPFKMAGHELAITSSVGLVLFPEDGNTPELLLKNADTAMYHAKKKGNSYLFFN 469

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R+ I+  +   ++     + Y P + +   ++ G+EAL+++  PK G IS 
Sbjct: 470 DTMNRQAVKRLQIENLMRFGLKEDHFEVYYQPKMNIRTGKLTGMEALVRFITPKKGIISP 529

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE   I  I   +L +  RD+  W D        + +N+++K     +L   +
Sbjct: 530 GVFIPIAEETGQIIEIGEVVLNKACRDVKEWLDSGLFSG-RVAVNLSAKQFSLPDLTSRI 588

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ K       ++L  +E  VM +P+ +  ++  L   GI L +DDFGT  S L+YL 
Sbjct: 589 DVILQKNELPSYFLELEITEGTVMDDPKEAIAIMRSLSARGIHLAMDDFGTGYSSLAYLK 648

Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P +T+K + + +     E+   ++ SI+ +A N++  ++A+ +     I  L ++ C+
Sbjct: 649 QFPLNTLKVDKAFIDDMTNERGRNMVDSIVTIAHNLDLHVVAEGVEQAHQIDILKKLNCE 708

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +Q  + + PL  +   + LK++      +
Sbjct: 709 TVQGYYYSKPLSKSEFTEFLKQQQTKAAPS 738



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL---ATGYFSQGIFSDGERQ 407
            + L  +         +       L+L   +I   +   +          + +    +R 
Sbjct: 11  LVVLAYSFELFAFESSLNYNSDNILILASAIIALALPYLLFVIHKLRRSRRQLRLSEKRL 70

Query: 408 SLAVLGSGDIVWDWDIVRDRVT-TTPDI----ATILGLASGSMHGPIRNWLPYIHINDRD 462
              V GSGD +WDW+I    V            T++G                IH +D +
Sbjct: 71  KSTVEGSGDTLWDWNIKTGEVIRINDKYLMDSTTLMGFPPN---------KGLIHPHDIN 121

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITE 521
           N   +L      +    +  +R++    ++HW++ R + +  ++N   LR  G   DI++
Sbjct: 122 NVEHLLKVHFAEQSAFFEATYRIKDTFGRWHWVLDRGKIIEKDANLSPLRMTGTVRDISQ 181

Query: 522 QKKSLEGILCNA-----FQDNL 538
            K + E +   A       D L
Sbjct: 182 LKSTEERLNLFAKCVESLTDAL 203


>gi|119945537|ref|YP_943217.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119864141|gb|ABM03618.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 598

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 128/445 (28%), Positives = 223/445 (50%), Gaps = 12/445 (2%)

Query: 521 EQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           E+K K  E +   AF D LTG+PNR+  +DRL   L  +   +     VM +D+D +K I
Sbjct: 152 EEKGKLTEKLNDLAFYDTLTGLPNRRILIDRLHHALASNVR-EGCDSAVMFVDLDHFKDI 210

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-----NSLKIADFA 634
           ND LG   GD +L+ + +R+   L+  D +ARL G+ F +IL + +      + K    A
Sbjct: 211 NDTLGHGFGDLLLIQIAQRLASCLRKGDTVARLGGDEFVLILENLDKKTIEAAAKANAIA 270

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P  L   +   T SIG   +     T+ ++LK A++AMY AK  GGN +  
Sbjct: 271 DKILAALNKPYQLDMHKCYSTVSIGAVFFDHQGNTAEDLLKQADIAMYQAKQAGGNQIRF 330

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F         V   ++ +L LA+E S+ +L Y   +   +  ++G EALI+W HP+ G +
Sbjct: 331 FNPEMQEIINVRITLENELRLAIEKSQFHLYYQIQMDSAN-RVLGAEALIRWMHPERGLV 389

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             + F+ +AEE  +I  I  +++E     I  W+ +     + + +N+++K        E
Sbjct: 390 LPATFIPLAEETGLILPIGKWVIETACAQIKVWQKEPLTRNLTLSVNVSAKQFRQKNFVE 449

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q+ + +     + +KL  +ES++  + E +  ++  L KIG+  +LDDFGT  S L Y
Sbjct: 450 KVQSAVERYAVPGNLLKLELTESLLQYDIEVTIAMMKALNKIGVQFSLDDFGTGYSSLQY 509

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D  K + S +          AI+++I+ MA+ ++  +IA+ +  E   + L   
Sbjct: 510 LKRLPLDQFKIDQSFVRDIATDNNDKAIVKAIVAMAQILDIDVIAEGVETEEQRQLLLGK 569

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC + Q    + P+  +    L+  
Sbjct: 570 GCVFFQGYLFSKPIPIDEFEALICR 594


>gi|56418936|ref|YP_146254.1| hypothetical protein GK0401 [Geobacillus kaustophilus HTA426]
 gi|56378778|dbj|BAD74686.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 758

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 139/593 (23%), Positives = 266/593 (44%), Gaps = 22/593 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           +     +     +  L+         A   + + + S+  R       + + +  +    
Sbjct: 176 MWTMMAMFLATAVAYLLALHQQMERKALAVYQKTLASNEHRLRRLAEMTMEGLIVY-AHG 234

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             V        +LG +   +       L        D    +        R    +E  +
Sbjct: 235 KVVEVNEAACRLLGYSESELIHLPIGELV------VDGSMKLNHPHEESER----FEIEL 284

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R  D       I +R   +  G+ +  +    D+TEQK++ E +   A  D LTG+PN++
Sbjct: 285 RRKDGTAFPAEI-VRRRYDYEGEKV-TVAAVRDLTEQKQNEERMRYIANHDELTGLPNKE 342

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +    +   L  +         V+ +++   K IND  G AVGD+VL+ L +   E  K 
Sbjct: 343 AMYKAVERCLVEAKQH-RYEAAVIFLEVSGMKTINDFYGYAVGDEVLLHLAQEWKE--KQ 399

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              + R SGN F  ++ +  +  K  + A  + ++   PI +   E+ VT +IG + +  
Sbjct: 400 GMTVGRWSGNEFIALVPNSTH-QKAEEMAKQLIEAADEPIVVNGMELYVTVNIGISVYPK 458

Query: 666 SKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
               +  +++ A++A Y A  K        +  ++   ++++ ++ DL  A+EN E  L 
Sbjct: 459 DGEDAKTLIRKADIARYEARKKAASDFLFFTEPMAIRLNEKMAMERDLRRALENEEFELY 518

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P IRL D +++G+EALI+W HP+ G +S S F+ +AE+  MI  IN +++        
Sbjct: 519 YQPQIRLHDRQVIGMEALIRWRHPEKGMVSPSLFIPVAEQTGMIIPINEWVIRTACEQTK 578

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
              D+   P + + IN++  +       + +  L++     P  + L  +E + M + ER
Sbjct: 579 QLLDRF--PDLSVSINLSPYEFESRRFVDKLARLLADAGLPPHHLDLEITERMTM-DTER 635

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           +  +L +L+ +G+++++DDFGT  S LSYL  +P D +K + S +     K+  IL +II
Sbjct: 636 ALDILSKLKGLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDVILPAII 695

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  NI   ++A+ +  E +   L    CD  Q  + + PL ++ +++ L  +
Sbjct: 696 RLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYDELVRFLNGQ 748


>gi|152995778|ref|YP_001340613.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836702|gb|ABR70678.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 659

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 143/535 (26%), Positives = 254/535 (47%), Gaps = 13/535 (2%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRV 485
            T +  +    G+   +       +    H+ D        +SF+G   +R  L  E R+
Sbjct: 128 TTLSFAVFEQSGIYLEASKCFTEQFGDIEHVRDLFAVAGAANSFIGRLAQRESLSQEIRL 187

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              +    W  I +     +N   + Y+   +DI E++     +      D LT +PNR 
Sbjct: 188 STKNG-VRWHKIEVSHQPMTN---VVYLLT-HDIQEERDHEVALYRLNNYDGLTHLPNRN 242

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
               +L + L  +      +  ++ +D+D +K IND  G  VGD+++  +  RI   +  
Sbjct: 243 LLYQQLESALVNARKRHR-QFGLLYLDLDGFKVINDNFGHRVGDELIQRVAERIKGSIPS 301

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              L RL G+ F ++L + N   ++   A ++ ++ +    + + E+ +TASIG AS+  
Sbjct: 302 SACLYRLGGDEFVVVLENTNEIEELESIAQSIMQNASNTYPVAKMEMMITASIGIASYPQ 361

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLV 723
                  +LKNA+ AMY AK  G N    +      +    + +   L  A+E  +  L 
Sbjct: 362 HADDVDNLLKNADAAMYRAKSTGHNMYCVYEDHMADNINAHLTLGGGLRKAIEEEQFILH 421

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P IRL DE +VG EALI+W HP+ G IS  +F+ +AEE  +I  +  +++ R  R + 
Sbjct: 422 YQPKIRLPDEIVVGAEALIRWVHPELGMISPDQFIPLAEESGLILPLGEWVIRRACRQLQ 481

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            WR+     PI + +N++S+  +  +L + +Q  + +T   P  ++L  +ES++M + ++
Sbjct: 482 EWREAGLD-PIKLSVNLSSRQFMQADLVDMVQRALEETGVDPEYLELELTESMLMADAQQ 540

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRS 901
           S   L   RK+G++L++DDFGT  S L+YL   P  T+K + S +          AI+++
Sbjct: 541 SIEKLHSFRKLGLTLSIDDFGTGYSSLAYLKKFPIQTLKIDRSFIHDLGLDCDNDAIVKA 600

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I MA ++   +IA+ +     +  L    C  +Q    + PL  +  L  LK  
Sbjct: 601 TIAMANSLNLKVIAEGVENRSQVDVLNGYDCQEVQGYLFSKPLSSDDFLMYLKAH 655


>gi|89096893|ref|ZP_01169784.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911]
 gi|89088273|gb|EAR67383.1| hypothetical protein B14911_18350 [Bacillus sp. NRRL B-14911]
          Length = 744

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 259/562 (46%), Gaps = 21/562 (3%)

Query: 401 FSDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIH 457
               +R    V  S D   V   ++    V        ++G +S   + G     + +++
Sbjct: 195 QESEDRYRGLVELSPDFIGVISGNV---IVYINEAGCRLIGASSKEQLLGKPI--INFVN 249

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                     L +      G+ ++E + +  D     + +   P+     + ++ IG   
Sbjct: 250 KEATFEIYNTLLAADSDTAGKRRFEVQAKRLDGVLVDVEVSSMPIRYGGREAVQVIG--R 307

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+KKS   +   AF D LTG+PNR   + +L  IL+        +  V+ +D+D++K
Sbjct: 308 DITERKKSERTMEYMAFYDTLTGLPNRNEIMKQLQGILN----SGKEKAAVLFLDLDRFK 363

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G + GD +L     R+ + +    ++AR  G+ F I+   E    +I   A A+
Sbjct: 364 IINDTKGHSTGDLLLKKAGIRLEDTVGSLGLVARQGGDEFIILFE-EKEKQQIEGAARAI 422

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +    P  L   E  +T SIG + +         ++K+A+ AMY AK RG N+ + +  
Sbjct: 423 IEQFNKPFILEGEEFYITPSIGISLYPEHGTDQETLIKHADTAMYLAKERGKNNFQFYTS 482

Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S     S ++ ++  L  A++  EL L Y P I L   ++ G EAL++W  P    +   
Sbjct: 483 SLEGLASRKMALENGLRKALDRGELLLHYQPQIDLKTGKLKGTEALVRWQRPDGHLVPPG 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  +I  +  ++L         W        + I +NI+ + L D E    ++
Sbjct: 543 EFIPLAEETGLIVPMGKWILRTACEQHKRW-KLEGAGSVPIAVNISVRQLEDPEFIMYVK 601

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++S     P  ++L  +ES +M N E++ + L  L+KIGI L++DDFG   S LSYL +
Sbjct: 602 TVLSSCDIEPGCLELEITES-IMQNIEKATIALNELKKIGIRLSIDDFGKGYSSLSYLKH 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P DT+K + S +       +  +++++II M  N+  +++A+ I  +   + L    C 
Sbjct: 661 LPIDTIKIDKSFVDDILDPAQNGSLVKAIIDMGLNLNFSVVAEGIEHKEQAEFLLENNCP 720

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q  + + P+      + +K 
Sbjct: 721 VGQGYYFSRPVTGEVFKEFIKS 742



 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 2/204 (0%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              + Y   V +I    +  +               ++    L+  ++ + +LI   ++ 
Sbjct: 3   FFARNYTILVWIIILCFIFLVDEAIKTALAYYFPPRNLWVFELIHTVISVGLLIVLFLVF 62

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                   +  +    +R +         +W  ++   R+  T  I  + G    S +  
Sbjct: 63  IQKGIQKTTAELRKSNQRLNNIFDTLDVAIWHHNMKSGRLMITSGIEKLYGFPRESFYRD 122

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              W   IH ND                  +   +R+   +    W+  R  P+ +  G 
Sbjct: 123 PDLWRKVIHPNDVSVLNEREQKVKQGE--PVVSIYRIIRPEGGIRWIQDRGIPVLDKKGR 180

Query: 509 ILRYIGIANDITEQKKSLEGILCN 532
           ++ +  +  DIT++++S +     
Sbjct: 181 LIEFSSVLFDITDRQESEDRYRGL 204


>gi|229134552|ref|ZP_04263363.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228648945|gb|EEL04969.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 883

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 158/724 (21%), Positives = 316/724 (43%), Gaps = 26/724 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     + ++       I ++       
Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNTHLSTDTITFLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   + +  L          +I   +K    +  LI    + F++ +  
Sbjct: 228 EDDNSHKNYFIVNPILGKKVLFVFPYLAVAILIGFTLKEQTSSSTLITGNCIAFVFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  R+ ND +   L          +   V        + S+ +    ++        
Sbjct: 288 HSIV--RMQNDTLTKRLQV----FNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+    + L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSILLGAPTNELLGETC--FSIILDADKHKLISALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIVPIM-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L   +  + T  +    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRSFFHRKLRKFIKNAQTTQS-EFALLYLDLDRFKVINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F I++ +  +   + +    + +S+  P  + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTILIENYTDEDSLFELCNQLFESMEKPFVIYEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG + +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGISIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  
Sbjct: 636 NAIQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++    +  W        + I +N+++K+       + + + ++ T    S + L  
Sbjct: 696 WTLQQACEQMKRWHA-LGYSHLKIGVNLSAKEFEQEGFVKSISSTLATTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + E  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCEDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHTNAFT 874

Query: 951 KLLK 954
           +LL+
Sbjct: 875 ELLE 878


>gi|228940595|ref|ZP_04103161.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228819101|gb|EEM65160.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 801

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 165/755 (21%), Positives = 307/755 (40%), Gaps = 20/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 54  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 109

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P  T+S     + +        +I
Sbjct: 110 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPKNTSSKRNYFIVNPTFGEKLLVI 168

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + +     +    L   L +    + 
Sbjct: 169 FPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKDLTEALKVFNNQLE 228

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            TVIQ        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 229 RTVIQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 288

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+    + +          LQ   +     +   W  + I P+ 
Sbjct: 289 ALIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 345

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT  K+  + I   AF D +T I NR  F   L   +  +    +
Sbjct: 346 -IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQD 404

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F II+ +
Sbjct: 405 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFAIIVHN 463

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 464 QT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 522

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++G EAL
Sbjct: 523 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 582

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + + IN++
Sbjct: 583 IRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWYSA-GYSNLKMGINLS 641

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    +  + M + I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 642 AIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKVLKSYGVHLSID 701

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +           I+++II +A  +   +IA+ + 
Sbjct: 702 DFGTGYSSLAYLPLYPIDTLKIPKEFVNRIGTFTDGDEIIQTIISLAHTLNMKVIAEGVE 761

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 762 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 796


>gi|307131184|ref|YP_003883200.1| sensory box/GGDEF family protein [Dickeya dadantii 3937]
 gi|306528713|gb|ADM98643.1| Sensory box/GGDEF family protein [Dickeya dadantii 3937]
          Length = 752

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 131/577 (22%), Positives = 241/577 (41%), Gaps = 21/577 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   L          +   R       S D +   +              +L  +  
Sbjct: 181 AALVMDKLEMRRLDLARRASQARFESIAESSPDAILCVNDRGTITFWNESAEKMLEYSRD 240

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500
            + G     +  I  +    F   L      +         E   RA         + + 
Sbjct: 241 QIVGEH---ISIIVPD---MFVVQLHHLATDKTAIFKGSSIELETRALPGTLIPTELTVS 294

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                  +  RY  I  DITE+++  E +   A +D LTG+ NR      L  +L     
Sbjct: 295 --MWHVNNQTRYGIILRDITERQRYEERLFLQAHRDPLTGLANRTLLTSTLEQVLK---- 348

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     +M+ID+D +K IND LG A GD++L S+ +R+   +   D++AR+ G+ F I+
Sbjct: 349 -NGEPTAIMIIDLDGFKDINDSLGHASGDEILSSVAKRLQGNVCSGDLVARMGGDEFAIL 407

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L  +N+  ++A  A  +   I+  + + +++I  +ASIG   + +   T  ++L +A+LA
Sbjct: 408 LPKQNDESQVAKLAEKIIYDISQAVPVDDKQINTSASIGLVMYPAHGTTVQDLLTSADLA 467

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N    F        +      L    A E  E  + Y P + L++ ++VG 
Sbjct: 468 LYQAKADGRNCYRFFTRELREVFQARHAFQLEFIRAYEQEEFEVFYQPQVSLVNSKVVGA 527

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G +  + FM   E     + I  +++    +    W          I I
Sbjct: 528 EALLRWRHPYKGLLGPAAFMSALERGPWAERIGDWVVRSACQQASDWCRSGAG-NFRISI 586

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+ +       L + ++ ++++T   P  ++L  +E++++ + E     L  LR  G+ +
Sbjct: 587 NLFAAQFRSGMLAQKIKEVLTQTGLKPGALELEITENIILRHDENMMKPLNELRSSGVGI 646

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             DD+GT  + LS L + P   +K + + +    E     AI+R+I+ + K+    +IA+
Sbjct: 647 AFDDYGTGYASLSMLKHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAE 706

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +   + L   GC+  Q      P+      KLL
Sbjct: 707 GVETQEQCERLLNKGCEQAQGYLFGRPMPAEEFEKLL 743


>gi|206977908|ref|ZP_03238796.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|217961168|ref|YP_002339736.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|206743908|gb|EDZ55327.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|217067428|gb|ACJ81678.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
          Length = 908

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 154/712 (21%), Positives = 302/712 (42%), Gaps = 47/712 (6%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG------YERA 337
              +  I  +      ++ Y  +   ++  T+  + L Y   I+   + G          
Sbjct: 198 RKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSISEDHNSHK 257

Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              I                   I +   + ++  + I+        + ++I      +Q
Sbjct: 258 NYFIVNPIIGKKALVIFPYLAVAILIGFTLKEQTASSILITGNCIAFIFVLIRHSIVRMQ 317

Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                                      + S+ +    ++         D ++  D+    
Sbjct: 318 NNSLTKRLQVFNAQLEEKVRLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVF 377

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +      + +LG  +  + G        I   D+    + L+         LQ   +   
Sbjct: 378 LNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY-- 433

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D   + + + I P+   +G I     +  DIT  KK  E I   AF D +T I NR  F
Sbjct: 434 KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 492

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +L  I+  + T ++    ++ +D+D++K +ND LG + GD +L  + +R    L    
Sbjct: 493 HKKLKRIIKNAKTTES-EFALLYLDLDRFKAVNDTLGHSAGDYILEEVAKRFQSCLPSHT 551

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            L+R+ G+ F I++ +  +   +      + K +     + E  +T++ SIG A +  S 
Sbjct: 552 HLSRIGGDEFTILIENYTDEDSLFQLCNQLFKCMEKSFVIYEHTLTLSISIGIAIYPHSG 611

Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           I ++ +LKNA +AMY   AK      +    ++     R+ +++DL  A++N EL+L+Y 
Sbjct: 612 IDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQ 671

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  + L++    +  W
Sbjct: 672 PQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 731

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   + I +N+++K+    +  + + A ++ T    S + L  +E + M +   + 
Sbjct: 732 HTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETL 790

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903
           + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + + +  + I+++II
Sbjct: 791 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 850

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A  +  ++IA+ +  +  +  L +  C  IQ  + + P+  +S   LLK+
Sbjct: 851 TLANTLGMSVIAEGVETKKHVSFLQKNNCQLIQGYYYSKPIHADSFSTLLKK 902


>gi|228973515|ref|ZP_04134099.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980073|ref|ZP_04140389.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228779659|gb|EEM27910.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228786210|gb|EEM34205.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
          Length = 785

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 165/755 (21%), Positives = 307/755 (40%), Gaps = 20/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P  T+S     + +        +I
Sbjct: 94  YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPKNTSSKRNYFIVNPTFGEKLLVI 152

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + +     +    L   L +    + 
Sbjct: 153 FPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKDLTEALKVFNNQLE 212

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            TVIQ        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 213 RTVIQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 272

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+    + +          LQ   +     +   W  + I P+ 
Sbjct: 273 ALIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 329

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT  K+  + I   AF D +T I NR  F   L   +  +    +
Sbjct: 330 -IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQD 388

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F II+ +
Sbjct: 389 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFAIIVHN 447

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 448 QT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 506

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++G EAL
Sbjct: 507 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 566

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + + IN++
Sbjct: 567 IRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWYSA-GYSNLKMGINLS 625

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    +  + M + I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 626 AIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKVLKSYGVHLSID 685

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +           I+++II +A  +   +IA+ + 
Sbjct: 686 DFGTGYSSLAYLPLYPIDTLKIPKEFVNRIGTFTDGDEIIQTIISLAHTLNMKVIAEGVE 745

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 746 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 780


>gi|271500473|ref|YP_003333498.1| PAS/PAC and GAF sensor-containing diguanylate cyclase [Dickeya
           dadantii Ech586]
 gi|270344028|gb|ACZ76793.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech586]
          Length = 722

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 244/577 (42%), Gaps = 21/577 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   L          +   R       S D +   +              +L     
Sbjct: 152 AALVMDKLEMRRLDLARRASQARFESIAESSPDAILCVNDRGTITFWNESAEKMLEYNRE 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500
            + G     +  I  +    F   L      +         E   RA         + + 
Sbjct: 212 QIIGEH---ISIIVPD---MFVVQLHHLATDKTAIFKGSSIELETRALSGSLISTELTVS 265

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                +G+  RY  I  D+TE+++  E +   A +D LTG+ NR      L  +L     
Sbjct: 266 --MWRDGNQTRYGIILRDMTERQRYEERLFLQAHRDPLTGLANRTLLTSTLDQVLK---- 319

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     +M+ID+D +K IND LG A GD++L S+ RR+ +     D++AR+ G+ F I+
Sbjct: 320 -NGEPAAIMIIDLDGFKDINDSLGHASGDEILASVARRLQDNAHSGDLVARMGGDEFAIL 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L ++++  ++A  A  +   I+  + + +++I  +ASIG   + +   T  ++L +A+LA
Sbjct: 379 LPNQSDEGQVARLAEKIIHDISQAVPVDDKQINTSASIGLVMYPAHGTTVQDLLTSADLA 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N    F        +      L    A E  E  + Y P + L++ +IVG 
Sbjct: 439 LYQAKADGRNCYRFFTRELREVFQARHAFQLEFIRAYEQEEFEVFYQPQVNLVNNQIVGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G +  + FM   E     + I  +++    +    W          I I
Sbjct: 499 EALLRWRHPYKGLLGPAAFMSALERGPWAERIGDWVVRSACQQASDWCRA-GAKNFRISI 557

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+ +       L + ++ ++++T   PS ++L  +E++++ + E     L  LR  GI +
Sbjct: 558 NLFAAQFRSGMLAQKIRDVLAQTGLKPSALELEITENIILRHDENMMKPLNELRNSGIGI 617

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             DD+GT  + LS L + P   +K + + +    E     AI+R+I+ + K+    +IA+
Sbjct: 618 AFDDYGTGYASLSMLKHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAE 677

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +   + L   GC+  Q      P+      KLL
Sbjct: 678 GVETQDQCERLLNKGCEQAQGYLFGRPMPAAEFEKLL 714


>gi|254428831|ref|ZP_05042538.1| PAS fold family [Alcanivorax sp. DG881]
 gi|196195000|gb|EDX89959.1| PAS fold family [Alcanivorax sp. DG881]
          Length = 936

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 275/563 (48%), Gaps = 12/563 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E+Q LA      + + ++  D     +        I G +   + G          
Sbjct: 371 RQAQEQQRLAATVFENAPEGIFILDQEFRFLAVNARFEQITGYSESLVIGRRILEEEQTQ 430

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            N RD + +I  +      G  + E   R  + +     +++  + +    ++RY+G+ +
Sbjct: 431 PN-RDTYLSITTAL--QESGFWEGEISERRRNGEIFPEWLQMSAVRDEQKRVIRYVGMMS 487

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T +K++ + +   +  D LTG+ NR  F + L   L L+  +   +  +++ID+D++K
Sbjct: 488 DLTTRKETEQQLQFLSNYDRLTGLANRTQFREHLHKSLTLARLN-REKVALLMIDLDRFK 546

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IN+ LG  +GD +L +   RI +     + LAR+ G+ F ++L +      I+     +
Sbjct: 547 PINESLGHEIGDRLLKAAAERIAQHAGGEEALARVGGDEFTLLLENHGGESGISQQCQKL 606

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++  P  +   E+ + ASIG + +  +   +  M+  +++A+Y AK  GGN+ + +R 
Sbjct: 607 INAMKKPFLIDGHELLLGASIGISLFPDTAKEAQSMINQSDMAVYQAKRSGGNNFQFYRS 666

Query: 698 SSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +      +++ ++  L  A+  +E  + Y P + L    I  +EAL++W HP  G +  +
Sbjct: 667 NMRVASVEQLALETSLRKAIFKNEFVVYYQPKMELASNRITSVEALVRWQHPTMGLLPPA 726

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I AI   +LER  R    W  Q     I + +N+++       + E + 
Sbjct: 727 DFIPLAEETGLISAIGELVLERSCRQAHKWYKQGLG-NICVSVNLSAHQFRKGNVAEIVD 785

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++S T   P  ++L  +ES++M + E++  LL +LR  GI L LDDFGT  S LSYL  
Sbjct: 786 RVLSTTELPPHLLELELTESLIMEDMEQNIELLQQLRTRGIELALDDFGTGYSSLSYLKR 845

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P DT+K + S +          AI R+II MA +++  +IA+ +  E  +  L  M CD
Sbjct: 846 FPVDTLKIDRSFIMDLDKSPDDAAITRAIIDMAHSLKMNVIAEGVETEEHLSILRDMHCD 905

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            IQ   ++ P+  N +L+LL  +
Sbjct: 906 SIQGYLLSRPVPENELLELLHTQ 928



 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 105/325 (32%), Gaps = 18/325 (5%)

Query: 216 SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
            ML        ++LG     F  L  L +            +++  +   +    M L  
Sbjct: 70  RMLSGLALSTPLLLGLAGYLFNPLETLFSPQ-------MLGAQLVCACLGLGLSVMAL-- 120

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
                   + T      + +   ++            + +   +L   + +    +    
Sbjct: 121 --AAYSSHFPTVFLYLVMLLGPAVTRLAETQQHHPFSLIVLMSLLGLFFLVAARRINRTG 178

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI-----LIGFTVIQHV 390
              +++ A     I ++    +  + L+  + Q           +      +   V +  
Sbjct: 179 HQAMMLQASNRSLIDYLNRARSDAEALNEKLAQEIYERKEARQRLQETNERLESMVQERT 238

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            A G  +  + +  ER  LA+  S   +WDW +   R   T +   +LG  S        
Sbjct: 239 QALGETNTALAATSERLELALEASNIGLWDWMLDTGRNYHT-NFDRLLGYDSAYFKNFFG 297

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDI 509
           +    +H +D    R  + S       R    +R+R AD  + W+    R +  + +G  
Sbjct: 298 DLETLVHPDDLTRIRRAMVSHFKGEDSRYHAVYRLRHADGSWRWIEDEGRVVSRSRDGRA 357

Query: 510 LRYIGIANDITEQKKSLEGILCNAF 534
            R IG   DIT+ +++ E     A 
Sbjct: 358 TRMIGTRRDITDDRQAQEQQRLAAT 382


>gi|229151947|ref|ZP_04280143.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228631502|gb|EEK88135.1| Sensory box/GGDEF [Bacillus cereus m1550]
          Length = 883

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/806 (19%), Positives = 322/806 (39%), Gaps = 60/806 (7%)

Query: 203 AIFLTIFYMVNRSSML-----------IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
             ++   +    +                      +VL  I     +L    NL    L 
Sbjct: 81  VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLEWYLFNQPNLNIFALS 140

Query: 252 IWRACSEIALSSS---------LIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
           +           +          +IF     +  R      ++  S      I F ++ +
Sbjct: 141 LGDVFLSFLYPIADLLFLLLGVSLIFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLNNH 200

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFIGL 354
               T  + R+     +L               +   L+                  I +
Sbjct: 201 LSTETIILLRLLYRIPILLIAIAGSISEDHNSHKNYFLVNPIIGKKALVVFPYLAVAILI 260

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLAT 393
              + ++  +  +        + ++I      +Q                          
Sbjct: 261 GFTLKEQTSSSTLITGNCIAFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDL 320

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
            + S+ +    ++         D ++  D+    +      + +LG  +  + G      
Sbjct: 321 VHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--F 378

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             I   D+      L+         LQ   +    D   +++ + I P+   +G I    
Sbjct: 379 SIILDEDKHKLALALEKVKQQESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSY 435

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DIT  KK  E I   AF D +T I NR  F  +L  ++  +   ++    ++ +D+
Sbjct: 436 IMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDL 494

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   +   
Sbjct: 495 DRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQL 554

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNH 691
              + K +     + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK      
Sbjct: 555 CNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVS 614

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +    ++     R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G 
Sbjct: 615 IYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGI 674

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ IAEE   I +I  + LE+  + +  W        + I +N+++K+    +  
Sbjct: 675 ISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFV 733

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + + + ++ T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S L+
Sbjct: 734 KSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLA 793

Query: 872 YLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L +
Sbjct: 794 YLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQK 853

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
             C +IQ  + + P+  ++  +LL+ 
Sbjct: 854 NKCQFIQGYYYSKPINIHAFTELLEN 879


>gi|316931621|ref|YP_004106603.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315599335|gb|ADU41870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 745

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 146/573 (25%), Positives = 245/573 (42%), Gaps = 30/573 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +   ++     +          G +                
Sbjct: 180 ELKQREASFRLMFDSNPVPMIVCELNDERILAVNDAAVEHYGYSPSEFASLTI------- 232

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512
                      D+ + +   +   E   R      AD     + I  R ++  NG+    
Sbjct: 233 -----RRLQAFDTELPWSGDQTHEERTARTWKHVKADGSLIDLAIYSRQLT-YNGEPAVL 286

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DITE+K++   +   A  D LTG+PNR S   RL  +L  +      +  V+ + 
Sbjct: 287 LALM-DITERKRAEMRLAFMAHHDGLTGLPNRNSLRKRLDDLLIQTRRTGE-KIAVLFLG 344

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +K +ND LG AVGD +L  + RR+   L+  D LARL+ + F +I         I  
Sbjct: 345 IDNFKAVNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPEDIVL 404

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L    + + ASIG A        S ++L NA++A+  AK       
Sbjct: 405 LAKRLLHAVAEPYLLQGHSVVIGASIGIAVAPGDGDDSEKLLMNADMALSRAKKDTRGTF 464

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   + +    R  I+ DL  A+++  L   Y P++RL D  I G EAL++W HP+ G
Sbjct: 465 SFFEVGMDARAQARRKIETDLRAALQHEVLRPYYQPLVRLADGRITGSEALVRWPHPERG 524

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS +EF+ +AE+  +I AI   +L     D   W D      + I +N++        L
Sbjct: 525 MISPAEFIPVAEDTGLINAIGAQILRSACMDAARWPD-----DVRIAVNLSPLQFRVGNL 579

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   + ++   P R++L  +E++++    +    L  LR +G+ +++DDFGT  S L
Sbjct: 580 LSVVMDALKQSGLPPRRLELEITETLLLEKSSQVLATLHALRALGVRISMDDFGTGYSSL 639

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   PFD +K + S + G  + R   AI+R+II +   +  TI A+ +  E ++  L 
Sbjct: 640 SYLRSFPFDKIKIDQSFVRGLCDNRESQAIVRAIISLGNGLGVTITAEGVESEAELSWLR 699

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             GC   Q    +       I  LL+ +     
Sbjct: 700 AEGCQEAQGFLFSHARPNAEITGLLELQQSGAS 732



 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 36/149 (24%), Gaps = 15/149 (10%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH-GPI 449
            A     +      ER   A+      +   D     +      A I    +     G  
Sbjct: 51  RAVEAALEEARRSHERLREAIDLIPQGIVFLDADGRYILWNKRYAEIYKATADQFRAGAR 110

Query: 450 RNWLPYI------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                 I      +          +   +           +V  AD +   +  R     
Sbjct: 111 IQDTMRIGIARGDYPEAIGREEEWIAERLQRMFNPGHSHEQVL-ADGRCIQIEERTT--- 166

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
            S+G     IG+  DITE K+        
Sbjct: 167 -SDG---GIIGLRVDITELKQREASFRLM 191


>gi|222097200|ref|YP_002531257.1| sensory box/ggdef family [Bacillus cereus Q1]
 gi|229140388|ref|ZP_04268943.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
 gi|221241258|gb|ACM13968.1| sensory box/GGDEF family [Bacillus cereus Q1]
 gi|228642949|gb|EEK99225.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
          Length = 911

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 154/712 (21%), Positives = 302/712 (42%), Gaps = 47/712 (6%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG------YERA 337
              +  I  +      ++ Y  +   ++  T+  + L Y   I+   + G          
Sbjct: 201 RKIYIFIFVLISSATFNYIYFYLHNHLSTETITLLRLLYRIPILLIAIAGSISEDHNSHK 260

Query: 338 VLLI---------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              I                   I +   + ++  + I+        + ++I      +Q
Sbjct: 261 NYFIVNPIIGKKALVIFPYLAVAILIGFTLKEQTASSILITGNCIAFIFVLIRHSIVRMQ 320

Query: 389 ---------------------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                                      + S+ +    ++         D ++  D+    
Sbjct: 321 NNSLTKRLQVFNAQLEEKVRLRTSDLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGVF 380

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +      + +LG  +  + G        I   D+    + L+         LQ   +   
Sbjct: 381 LNVNKAGSILLGAPTDELLGETC--FSIILDEDKYKLASALEKVKQQESASLQLSSQY-- 436

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D   + + + I P+   +G I     +  DIT  KK  E I   AF D +T I NR  F
Sbjct: 437 KDGFTYSLYVTIVPIM-IDGQISGSYIMMKDITALKKQQEEIKYLAFHDTVTKIGNRAFF 495

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +L  I+  + T ++    ++ +D+D++K +ND LG + GD +L  + +R    L    
Sbjct: 496 HKKLKRIIKNAKTTES-EFALLYLDLDRFKAVNDTLGHSAGDYILEEVAKRFQSCLPSHT 554

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            L+R+ G+ F I++ +  +   +      + K +     + E  +T++ SIG A +  S 
Sbjct: 555 HLSRIGGDEFTILIENYTDEDSLFQLCNQLFKCMEKSFVIYEHTLTLSISIGIAIYPHSG 614

Query: 668 ITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           I ++ +LKNA +AMY   AK      +    ++     R+ +++DL  A++N EL+L+Y 
Sbjct: 615 IDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQ 674

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I  I  + L++    +  W
Sbjct: 675 PQVDSKSNKIIGAEALIRWNHPELGVISPYEFIPIAEETLQIIPIGKWTLQQACEQMKRW 734

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   + I +N+++K+    +  + + A ++ T    S + L  +E + M +   + 
Sbjct: 735 HTS-GYSHLKIGVNLSAKEFEQEDFVKSISATLTNTGLPASSLDLELTERIAMMDERETL 793

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSII 903
           + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + + +  + I+++II
Sbjct: 794 IKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTII 853

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A  +  ++IA+ +  +  +  L +  C  IQ  + + P+  +S   LLK+
Sbjct: 854 TLANTLGMSVIAEGVETKKHVSFLQKNNCQLIQGYYYSKPIHADSFSTLLKK 905


>gi|237809846|ref|YP_002894286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
 gi|237502107|gb|ACQ94700.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
          Length = 753

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 152/689 (22%), Positives = 285/689 (41%), Gaps = 27/689 (3%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
             A +      G A +A +  +      +    A   +  + +  +  +       ++R 
Sbjct: 64  RSAILSMAGLFGGALVATIAGVIAGVYRLWLGGATYGVGILTIVISVILGLAYRAAHQRG 123

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--------VIQH 389
            +      L+    +     +                 + +   + F         ++Q 
Sbjct: 124 WMSKGPIQLLLFGVLLHTAILLLFSLFPFPILHSFMQQIALPYTVSFALATMLLGLMLQD 183

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGP 448
           ++      Q +     R    V    D++   D     +   P            ++ G 
Sbjct: 184 IINRTKTEQALQDSESRLRAIVQAIPDLMVIIDEDGHYLDALPTTNNQF-YPRALALIGS 242

Query: 449 IRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             +    +     D     +   +   +   ++YE   R        +  R +P+  +  
Sbjct: 243 NLH--SELPPETADRILATVRDSLRLQQTQTIEYE---RDFKMGQRLVEGRAQPLGYTVN 297

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +    I +A DIT++K   + I   AF D LTG+PNR+   DRL   +  S      R  
Sbjct: 298 NKQVVIFLARDITDRKIKEDEIAWLAFYDPLTGLPNRRLLQDRLHQAMAGSKRSGQ-RAA 356

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D +K +ND LG   GD +L  +  R+ E ++  D +ARL G+ F ++L   N+S
Sbjct: 357 LLFIDLDNFKTLNDTLGHDKGDLLLQQVATRLFECVRECDTVARLGGDEFVVMLEELNHS 416

Query: 628 LKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            ++A          +   +  P  +   E   +ASIG   + + + +S E++K A++AMY
Sbjct: 417 EELAAAQSKMVGEKILVKLCQPYLIAGYEHNSSASIGITLFLAHQESSDELMKRADIAMY 476

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N +  F          R  ++ DL   +   +L L Y P + +    I+G EA
Sbjct: 477 QAKSAGRNTLRFFDNKMQAIVTSRAELENDLREGLRQQQLLLHYQPQVDVH-GRIIGAEA 535

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G +S + F+ +AEE  +I ++  ++L    R +  W  Q  M  + + +NI
Sbjct: 536 LVRWQHPSRGMVSPAHFIPLAEESGLILSLGDWVLNEACRQLRRWAAQPAMAHLTMAVNI 595

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++ +   +  + + A I      P  +KL  +ES+++ + E   L +  L+  G+  +L
Sbjct: 596 SARQIHQPDFVDQVLAAIHTAGVQPYHLKLELTESLLLEDTEEIILKMTALKACGVGFSL 655

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P D +K + S +          AI  SII +A+++   +IA+ +
Sbjct: 656 DDFGTGYSSLAYLKRLPLDQLKIDKSFVHDLLTDPNDAAIASSIITLAQSLGLNVIAEGV 715

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             E   + L  +GC   Q      P+  +
Sbjct: 716 ETEAQRQRLEALGCYTYQGYLFGHPVPAD 744


>gi|89091868|ref|ZP_01164823.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89083603|gb|EAR62820.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 735

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 143/567 (25%), Positives = 248/567 (43%), Gaps = 14/567 (2%)

Query: 400 IFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +    +R  +A      S D +   +   + +     +  + G +   + G     L   
Sbjct: 171 LQEKNDRLQIAQKVYDFSKDGIIITNADNEILYVNKALEEMSGFSLNELKGSNPRRLSAG 230

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               R     +  S V    G  + E   +  D   + +   I  + +       Y+ I 
Sbjct: 231 QQEKR-LADKLWHSLVKE--GFWRGELWNQHKDGTTYPVSTSITTIPDELNVAKHYVAIH 287

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT +K++ + I   A  D+LTG+ NR  F  RL ++L  S    N     +++D+D +
Sbjct: 288 RDITAEKQAEKLIRFQATHDSLTGLLNRYEFNLRLESLL-TSVQSRNNSAAFIMLDMDDF 346

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND+ G + GD +L+ + +RI +LL    +LARL G+ F  I     +   I     +
Sbjct: 347 KSINDIQGHSTGDALLMLMAKRIDDLLPDSYLLARLGGDEFA-IFAEYADKSVIHTLTQS 405

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +      L    +  + SIG + +      S E+ K A+ A+Y AK  GG     F 
Sbjct: 406 LVGAFNQVFELQGLRLRCSTSIGLSLFPHDADNSQELFKCADQALYEAKKNGGACYAVFT 465

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       I+  L  A+E   + L Y PI+ +    +   EAL +W   + G I+ 
Sbjct: 466 PRLRTAAERHQKIRLKLADAIEQERIELHYQPIVDIATGRVSRCEALARWTDDELGPITP 525

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEG 813
            EF+ +AE   +I  ++  +++R   ++          PI I IN +  + L      + 
Sbjct: 526 CEFIKVAEHSGLIHPLSYLIVKRALSELREINSALI-EPIEISINRSPVEYLEQTAQQDF 584

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L  +       I +  +ES ++ +PE +  LL  L+  G +L LDDFGT  S LSYL
Sbjct: 585 ILNLSKEMGIPAELITIELTESFMLKDPELAIRLLTSLKDFGFNLALDDFGTGYSSLSYL 644

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +T  T       ++++II MA+ +    IA+ +  E  ++ +  +G
Sbjct: 645 KKFPFDFLKIDRSFITDITSTADDYQLVKTIIEMARILGMKCIAEGVEDEKQLQIIESLG 704

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958
           C +IQ  + + PL  +  +  LK+ FP
Sbjct: 705 CRHIQGYYFSRPLNASDFILYLKQAFP 731


>gi|328911387|gb|AEB62983.1| putative sensor protein [Bacillus amyloliquefaciens LL3]
          Length = 804

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 165/779 (21%), Positives = 309/779 (39%), Gaps = 46/779 (5%)

Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL----SSS 264
                RS + +   ++      + +   G L+  VN+      +    S  A      ++
Sbjct: 35  LKTGIRSKLWLIAGSVIMGFGIWSTHFVGMLAVYVNMHMNYEAVPMVSSLGAAISGSFAA 94

Query: 265 LIIFLFMYLHWNRWH-AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
           L I     L  NR     V       +     +  +S    M    +   ++   +    
Sbjct: 95  LYIVSRRILTLNRLITGSVFMGAGISLMHYMGMSAISRVMIMYNPFLFCFSILIAIAASF 154

Query: 324 Y---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP----------A 370
                     +K     +        +F+      M  T  +                  
Sbjct: 155 VSLKVFFGLAVKKPTEHLTFQKIISSVFMGAAVSGMHYTGMMAASFYADTRRPSSDMEIH 214

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG------ERQSLAVLGSGDIVWDWDIV 424
                V I ++I    +    ++ +  Q    D       +R    +  + D ++     
Sbjct: 215 SFHLSVFITLIIFCFQMLLFFSSHFDRQFFRHDERMKDHEQRFQSLIKHNIDPIFILSPS 274

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              + +    A +      S     +NW  +I        +T        ++  L ++  
Sbjct: 275 GKILYSNEAGAEM----IHSFGLDSQNWRRHIS----SPLKTYFKQVKKEQQA-LHFDAD 325

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           ++  D    ++ +   P+   NG    Y+ I  D+T+Q+++ + I   A  D+LT +PNR
Sbjct: 326 LKT-DIGLFYINVTFIPVLVDNGLDSVYV-ICKDMTKQRQAEKEIHRMAHYDSLTDLPNR 383

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +  + RLT +L+   +  +L   V  +D++++K IND LG  VGD +L S   R+  ++ 
Sbjct: 384 RHAVQRLTEVLEKKHSHGHLTV-VFFLDLNRFKVINDALGHNVGDRLLQSAAERLSSIIP 442

Query: 605 FPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               +ARL G+ F IIL    +    I D A  +      P  + E E+  + SIG A  
Sbjct: 443 DNGFIARLGGDEFIIILTDARSEDDDIDDLAKQIIMQFEKPFIVQEHELITSVSIGIAVS 502

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721
                   E++K A++AMY +K R  +  + +        + ++ I+ +L  A+E     
Sbjct: 503 PKDGSDGMELMKKADMAMYASKDRNKSKYKYYSAQIGEKEAKKLRIEMELREAIEKKRFV 562

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P     D+ I G+EAL++         +  +F+  AEE  +I  +  +++    R 
Sbjct: 563 LHYQPQYSSADQLITGVEALLRVAGADGKLQNPGDFIQAAEETGLIIDLGKWIITEACRQ 622

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W ++     + + INI++K     EL   +Q  ++     P+ ++   +ES+ M + 
Sbjct: 623 AKEWHEKGYH--LPVAINISAKQFQSEELVPFIQKTLTHYKLPPALLEAEVTESMTMEDR 680

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899
           E S+ +L  L ++GIS+++DDFGT  S LSYL   P   +K + S +       K   I 
Sbjct: 681 EHSKKVLTALTELGISVSIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDLQLHPKSAQIT 740

Query: 900 RSIIPMAKNIETTIIA---KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +II M   +   ++A   + +   +  K L   GCD++Q  + + PL    I +LL E
Sbjct: 741 GAIIAMGHQLSLLVVAEGVEGVETAMQKKLLDEKGCDFLQGFYFSRPLPPEEIEELLHE 799


>gi|228911974|ref|ZP_04075700.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228847668|gb|EEM92596.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 785

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/760 (21%), Positives = 304/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 93

Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318
           +L+ YL    +          +        +            +   I        L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 154 PYLAVAILIGFTLKEQTSSATLITGNCIAFLFVLIRHTIVRMQNKD------LTETLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKDSAALIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +   
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ +    +      P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I   + +++
Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + +   I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 780


>gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 127/583 (21%), Positives = 247/583 (42%), Gaps = 12/583 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++  L          SD    +  +  + + +         +        I G     +
Sbjct: 257 TLRRALRYAIIRHRRDSDMRLAAAVIKHTREGITISRSDGTIIEVNDAFCRITGYRREEV 316

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L      DR+ +  +  +      G    E   +  + + +  ++ I  + + 
Sbjct: 317 IGQNPRLLQS-GRQDREFYVEMWRALTEE--GFWSGEIWNKHKEGRIYPQLLTISAVPDG 373

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    Y+ I +DI+E K+  + +   A  D LTG+PNR    DRL   +  +      R
Sbjct: 374 TGKPGHYVAIFSDISEIKEQQQRLERIAHYDTLTGLPNRDLLADRLNHAMVQAIRRQ-TR 432

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  +D+D +K IND  G  VGD +L +L  R+ + L+  D L RL G+ F  I     
Sbjct: 433 LAVAYLDLDGFKAINDTHGHDVGDFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLP 492

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684
           ++         +  + AMP++  E  + V+AS+G   +  S+   + ++L+ A+ AMY A
Sbjct: 493 DNETCLPLLQRLLNAAAMPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQA 552

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F             +   +  A+ + E  L Y P + +    +VGLEALI
Sbjct: 553 KQTGKNRYHLFDAVQEVAMRGHHELLGRIKRALNDQEFLLYYQPKVNMRSGVVVGLEALI 612

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G ++ + F+   E+  +  A+  ++L      + +WR       + + +NI++
Sbjct: 613 RWQHPELGLLAPTYFLPAIEDHPLAVAVGDWVLATALAQLAAWRRAG--ISLPLSVNISA 670

Query: 803 KDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + L  ++    ++  +++       +++L   ES  + + ++   ++ + R +G+   LD
Sbjct: 671 RQLQQDDFVAKLEQQMARWPEVPADQLELEVVESSALADIDQVSKIITQCRAMGVGFALD 730

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P  T+K + S +         +AIL  ++ +A+      +A+ + 
Sbjct: 731 DFGTGYSSLTYLKRLPARTLKIDRSFVADMLDDPDDLAILEGVLGLARAFNRQTVAEGVE 790

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
                  L ++GC+  Q    A P+    +   +       + 
Sbjct: 791 SAAHADSLLKLGCEVAQGYWFAKPMPMAEVAAWVAAYETRSRR 833


>gi|218666510|ref|YP_002426145.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218518723|gb|ACK79309.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 709

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 134/576 (23%), Positives = 262/576 (45%), Gaps = 11/576 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-R 450
                 Q ++ + ER  + +   GD V   D     +        ++G A     G    
Sbjct: 19  ERQSAEQTLWEEKERAEVTLHSIGDAVITTDTEGRVMDMNVVAEALMGYARTEAVGRPLE 78

Query: 451 NWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           +    +      +    +   +   +  RL     +   D Q   +     P+ +  G +
Sbjct: 79  DVFRIVQEGSHAHLDNPVRRVLEEGQVVRLANHTMLLTKDGQERAIEDSAAPIRDRQGVL 138

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L  + + +D+TE+++ +  +   A  D LTG+PNR  F+DRL      +   ++L   V 
Sbjct: 139 LGVVLVFHDVTEKRRLIAELAHQATHDALTGLPNRVLFMDRLGHDRAQTLRHEHL-LAVG 197

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K++ND  G A GD +L  + +R+   ++  D LAR+ G+ FG++L    N  +
Sbjct: 198 ILDLDGFKQVNDHFGHASGDALLQEMAQRLHREMRSGDTLARMGGDEFGLLLPDVGNLEQ 257

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + D    + + +  P  L + EI +++SIG  S+        ++L++A+LA+Y AK  G 
Sbjct: 258 VEDACTRLLEVLRAPFYLGDEEIPLSSSIGLTSYPLDDSLPEDLLRHADLALYAAKAAGR 317

Query: 690 NHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    F     +  +  ++       A++   L L Y P++ + +   VG+EALI+ DHP
Sbjct: 318 DRYHWFDWPMDKLQQEAMEVRKMTENALDRGRLLLHYQPVVEIGNG-PVGVEALIRLDHP 376

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  + F    +   + + I  F+L        +W  Q    P+ I +NI++  LLD
Sbjct: 377 ERGLLPPAAFAAALDAPRLTRRIGCFVLATALTQTQTWHRQG--MPLRISVNISAHHLLD 434

Query: 808 NELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                 ++A +       PS +++  +E+  + +   +R  L    ++G+ + LDDFGT 
Sbjct: 435 QRFLSDLRAALDAHPDLPPSAVEIEITETAPLLDFAGARETLLACNRLGVRIALDDFGTG 494

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + L+YL  +P  T+K + S +       K  AI+  ++  A+ +   +IA+ +      
Sbjct: 495 NASLTYLQKLPAQTIKIDQSFVRDIINDPKDYAIVSGVVTSARLLGLEVIAEGVETAEHA 554

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
             L  + C  +Q   +A P+   +I   +++  PL+
Sbjct: 555 AMLGHLQCHCLQGYAIARPMAPEAIPGWIRQYKPLL 590


>gi|308173314|ref|YP_003920019.1| sensor protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606178|emb|CBI42549.1| putative sensor protein [Bacillus amyloliquefaciens DSM 7]
          Length = 801

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 164/776 (21%), Positives = 308/776 (39%), Gaps = 43/776 (5%)

Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL----SSS 264
                RS + +   ++      + +   G L+  VN+      +    S  A      ++
Sbjct: 35  LKTGIRSKLWLIAGSVIMGFGIWSTHFVGMLAVYVNMHMNYEAVPMVSSLGAAISGSFAA 94

Query: 265 LIIFLFMYLHWNRWH-AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
           L I     L  NR     V       +     +  +S    M    +   ++   +    
Sbjct: 95  LYIVSRRILTLNRLITGSVFMGAGISLMHYMGMSAISRVMIMYNPFLFCFSILIAIAASF 154

Query: 324 Y---FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP----------A 370
                     +K     +        +F+      M  T  +                  
Sbjct: 155 VSLKVFFGLAVKKPTEHLTFQKIISSVFMGAAVSGMHYTGMMAASFYADTRRPSSDMEIH 214

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG------ERQSLAVLGSGDIVWDWDIV 424
                V I ++I    +    ++ +  Q    D       +R    +  + D ++     
Sbjct: 215 SFHLSVFITLIIFCFQMLLFFSSHFDRQFFRHDERMKDHEQRFQSLIKHNIDPIFILSPS 274

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              + +    A +      S     +NW  +I        +T        ++  L ++  
Sbjct: 275 GKILYSNEAGAEM----IHSFGLDSQNWRRHIS----SPLKTYFKQVKKEQQA-LHFDAD 325

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           ++  D    ++ +   P+   NG    Y+ I  D+T+Q+++ + I   A  D+LT +PNR
Sbjct: 326 LKT-DIGLFYINVTFIPVLVDNGLDSVYV-ICKDMTKQRQAEKEIHRMAHYDSLTDLPNR 383

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +  + RLT +L+   +  +L   V  +D++++K IND LG  VGD +L S   R+  ++ 
Sbjct: 384 RHAVQRLTEVLEKKHSHGHLTV-VFFLDLNRFKVINDALGHNVGDRLLQSAAERLSSIIP 442

Query: 605 FPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               +ARL G+ F IIL    +    I D A  +      P  + E E+  + SIG A  
Sbjct: 443 DNGFIARLGGDEFIIILTDARSEDDDIDDLAKQIIMQFEKPFIVQEHELITSVSIGIAVS 502

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721
                   E++K A++AMY +K R  +  + +        + ++ I+ +L  A+E     
Sbjct: 503 PKDGSDGMELMKKADMAMYASKDRNKSKYKYYSAQIGEKEAKKLRIEMELREAIEKKRFV 562

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P     D+ I G+EAL++         +  +F+  AEE  +I  +  +++    R 
Sbjct: 563 LHYQPQYSSADQLITGVEALLRVAGADGKLQNPGDFIQAAEETGLIIDLGKWIITEACRQ 622

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W ++     + + INI++K     EL   +Q  ++     P+ ++   +ES+ M + 
Sbjct: 623 AKEWHEKGYH--LPVAINISAKQFQSEELVPFIQKTLTHYKLPPALLEAEVTESMTMEDR 680

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAIL 899
           E S+ +L  L ++GIS+++DDFGT  S LSYL   P   +K + S +       K   I 
Sbjct: 681 EHSKKVLTALTELGISVSIDDFGTGHSSLSYLKDFPIHRLKIDKSFIDDLQLHPKSAQIT 740

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +II M   +   ++A+ +   +  K L   G D++Q  + + PL    I +LL E
Sbjct: 741 GAIIAMGHQLSLLVVAEGVETAMQKKLLDEKGYDFLQGFYFSRPLPPEEIEELLHE 796


>gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator
           [Acaryochloris marina MBIC11017]
 gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator,
           putative [Acaryochloris marina MBIC11017]
          Length = 636

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 129/446 (28%), Positives = 229/446 (51%), Gaps = 6/446 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I E++K  + +   A  D LT +PNR  FL  L   +  +    +    ++ +D D++
Sbjct: 188 QEIAEREKVQQQLKHMAMHDPLTDLPNRTLFLTCLEETIQDTQKQTDQSFALLFLDCDRF 247

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD  LV++ +R    +    +LARL G+ F I+L + +N  +  + A A
Sbjct: 248 KSINDSLGHLVGDQFLVAIAKRFQRCVGDQ-LLARLGGDEFTILLKNVSNEQQAINIADA 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +++S+  P ++ + E  V+ASIG    +      +EML++A+ AMY AK  G      F 
Sbjct: 307 IQRSLLEPFHIGDNEFFVSASIGIVMSSPDYQQPTEMLRDADTAMYRAKAMGKARHIVFN 366

Query: 697 VSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            S     +  + ++ DL  A+E  E  L Y PI+ L    I G EAL++W  P+ G +S 
Sbjct: 367 ASMHEDVQSSLQLETDLRRAIERQEFILNYQPIVALDTGMITGFEALVRWISPELGFVSP 426

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEG 813
            +F+ +AE+  +I  +  ++L    R +  W+       P+ + +N++ K      L E 
Sbjct: 427 GKFIPLAEDTGLIIPLGEWVLREACRQLNEWQSNNVTDIPLTMSVNLSVKQFSQPNLIET 486

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++++T      +KL  +ES +M N + +  +L +LR   I L++DDFGT  S LSYL
Sbjct: 487 IDQILAETQLPTQCLKLEITESAIMENSDSAAKILDQLRDRQIHLSIDDFGTGYSSLSYL 546

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P +T+K + S +      +  +AI+++I+ +A+ +   ++A+ I       +L  +G
Sbjct: 547 HRFPVNTLKVDRSFVCRLDAADDNVAIVQAIVTLAQTMGMDVVAEGIETTEQQHQLENLG 606

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C+Y Q      P+   +  ++L  R 
Sbjct: 607 CEYGQGYLFCKPVNAETAGEMLANRN 632


>gi|283850872|ref|ZP_06368158.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. FW1012B]
 gi|283573795|gb|EFC21769.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. FW1012B]
          Length = 567

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/544 (25%), Positives = 257/544 (47%), Gaps = 12/544 (2%)

Query: 422 DIVRDRVTTTPDIATILG-LASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGR 478
           D     V       T+L  + +G   G          +        R  L S +G R  R
Sbjct: 20  DTAGLVVAANASCLTLLNEIDAGDAIGRRFTGYCDRILSPTAAAAVREGLASVLGARTSR 79

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              +             + R   ++   GD+   +    DI+ +K+  E IL +AF D L
Sbjct: 80  YTMDL----PCGAAQVPVWRALCVTPLAGDVPGALVSLTDISREKQLEEHILHDAFHDTL 135

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F++RL   +     + +    V+ +D+D++K +N   G   GD +L+ +  R
Sbjct: 136 TGLFNRALFINRLDQAIRRQKRNPDALYAVLYLDMDRFKLVNKTFGHVTGDRLLMIIANR 195

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + +LL+  D LAR  G+ F I++       + +  A  + + +A P  L ++EI VT SI
Sbjct: 196 LQKLLRDVDTLARFGGDEFAILIEDVAGMEETSSMAANVLRELAAPFRLKKQEIFVTCSI 255

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVE 716
           G    ++      ++L++A+ AMY +K  GG+H   F        +  ++ +  L  A+E
Sbjct: 256 GVVLGSAVYEHPDQVLRDADNAMYSSKEHGGDHFTVFDAGMRVLTQRRMEMEMALRHALE 315

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + E+ + Y PI+ L   EI G+EAL +W  P  G I   EF+ IAEE  +I  +   +L 
Sbjct: 316 SGEITVHYQPIVSLRTGEITGVEALARWQRPGQGLIPPVEFIPIAEETGLINELGAMILR 375

Query: 777 RIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +  R +++    +     + + +NI+ +     +  + + A++++T   PS +KL  +ES
Sbjct: 376 QACRRMVALAKASPDAARLTLSVNISGRQFKRPDFVDEVAAILAETGIDPSLVKLELTES 435

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           V+M + + +   + RL+ + + + +DDFGT  S LSY+   PFD++K + S +    E  
Sbjct: 436 VLMDDADEAISTIKRLKSLRLKVVIDDFGTGYSSLSYIQRFPFDSLKVDRSFVGNMNEAE 495

Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               I+R+II MA  +   ++A+ +  +     L+ + C+  Q    + P+    +  L+
Sbjct: 496 QNMEIVRTIIAMAHKLGLEVVAEGVELDEHRSALSDLRCESAQGFFFSKPVPGEELDALV 555

Query: 954 KERF 957
              +
Sbjct: 556 LRHW 559


>gi|117925926|ref|YP_866543.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117609682|gb|ABK45137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 1118

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/559 (24%), Positives = 256/559 (45%), Gaps = 14/559 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                       +  +   +   +     +      + + G +   M G   + L  +  
Sbjct: 413 EAHQSEGNARQVLSLADMAIISVNEEGIIIEVNRFASEMFGYSEQEMIGLSVHLL--LPP 470

Query: 459 NDRDNFRTILDSFVGY----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           + R     +   FV      RR   + E      D  F  +   I     +   +   + 
Sbjct: 471 HFRKRHTLLYQGFVDGEVTERRMGQRGEVTGYRKDGTFFPVEASIAKYRCNEKWV--MVA 528

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              ++TE K++ E ++  A  D LTG+PNR  F +RLT+ L  S  +      ++ I++D
Sbjct: 529 SFRELTELKRAQEELVRRATHDPLTGLPNRTLFRERLTSALHRSHQNGE-NIGLLFINLD 587

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +++IND  G  +GD +L  +++R+  ++   D + RL+G+ F I+     N   ++  A
Sbjct: 588 GFREINDSYGHEMGDLLLEEVSQRLITVVNQGDTVGRLAGDEFIILCEHIQNPEPLSSLA 647

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           +++   I  PI   + ++ VTASIG A    S  ++ +++++A+ AM   K RG N  E 
Sbjct: 648 VSVTNVIREPIVHDDLKLRVTASIGIALGHGSTHSADDLMRSADSAMNSVKERGRNGWEF 707

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F          R+ I   L  A++N+E Y  Y PI+      I G E L++W     G I
Sbjct: 708 FNPTLQEEAEKRLAISTGLRTAIDNNEFYARYQPIVDSESGMIRGAELLVRWRSSD-GEI 766

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ +AE    I  I  ++ E   +    W+ +      +I IN++++ L +  + E
Sbjct: 767 SPGVFIPVAEMTGAIITIGRWVFEEGCKAERRWKAKFGEQAPYITINVSTRQLSEPLIIE 826

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             Q ++++T   P+RI L  +E+ +M +   +R +L RL   G+ + +DDFGT  S L+ 
Sbjct: 827 EFQEILAETGADPTRIILEITETSLMADVSANREVLNRLATTGMRVAVDDFGTGYSSLAQ 886

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  +T+K +   + G    E+   ++ +I  +AK+++  I+A+ +  +     +  +
Sbjct: 887 LSRLKVNTLKIDREFVLGLDEGEEGQIVVSAISRLAKSLKLKIVAEGVETDEQRNTIRSI 946

Query: 931 GCDYIQDSHVASPLGFNSI 949
           GCD IQ  +   PL   ++
Sbjct: 947 GCDLIQGYYYHPPLSEEAL 965


>gi|172037701|ref|YP_001804202.1| hypothetical protein cce_2788 [Cyanothece sp. ATCC 51142]
 gi|171699155|gb|ACB52136.1| hypothetical protein cce_2788 [Cyanothece sp. ATCC 51142]
          Length = 703

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 231/446 (51%), Gaps = 6/446 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
                 DIT++KK+   +  +AF D LTG+PNR  F   ++ ++      +     V+ I
Sbjct: 248 IRSYIFDITQRKKAETELKYHAFHDGLTGLPNRTFFDQHISLMIKNCERYNK-SFAVLFI 306

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DID +K IND LG  +GD +L    +R+   ++  D++ R  G+ F ++     N   +A
Sbjct: 307 DIDSFKNINDTLGHTIGDCLLKCFAQRLTSQVRNSDLVCRWGGDEFVVLFSEIENPDAVA 366

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            F+  +  +   P+N+   +I +  S+G A +      +  +LKNA+ A+Y  K  G NH
Sbjct: 367 KFSERLLNTFEHPLNIEGHQIYLKCSVGIALYPEDGKDTEMLLKNADSALYRTKESGRNH 426

Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + +        ++   ++  L  A++N EL L Y P I +   ++ G+EAL++W++ K 
Sbjct: 427 YQFYDPEMSLEIAENFALETQLHEAIKNEELILHYQPQINIRTGQVYGVEALVRWNNSKL 486

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  ++F+ +AE+  +I  +  ++L+   +    W+     PP+ + +N++++ L    
Sbjct: 487 GLVKPNKFIPLAEKTGLILPMGEWVLKTACQQNKKWQKMGL-PPVRVAVNLSAQQLQQPN 545

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E ++  +      P  ++L  +ES++M N   +   L +LR +G+ +++DDFGT  S 
Sbjct: 546 LIETVENTLESVGLDPRWLELEVTESILMKNTTLASKTLHKLRDMGVYISMDDFGTGYSS 605

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL   PFDT+K + S +     + + I+I+ +I+ +++     +IA+ +  +  +  L
Sbjct: 606 LGYLKKFPFDTLKIDQSFVKELNQSPEDISIISAIMTLSRGFNMRVIAEGVENQNQLNLL 665

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ C+ +Q    + PL    ILK L
Sbjct: 666 QQLDCEEMQGYFFSHPLSPEEILKYL 691


>gi|326385333|ref|ZP_08206978.1| PAS:GGDEF domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210139|gb|EGD60911.1| PAS:GGDEF domain-containing protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 693

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/570 (24%), Positives = 249/570 (43%), Gaps = 13/570 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            +      +    ++           +    +    +        I G +   +     +
Sbjct: 124 ESKRLELELRDSEKKLRGLFELCPLGIALTTMDGAYLEFNEAFCRICGYSPDEI--RKLD 181

Query: 452 WLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +         +  +  L S +     G  + E+     D     + +    +  S+G   
Sbjct: 182 YWALTPRKYAEAEQIQLRSLLEFGHYGPYEKEY--IRKDGCCVPLRLTGVLLQGSDGK-S 238

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
               I  D+TEQ+KS E I  +A  D +TG+PNR+ F +RL   +  SA ++  R  V+ 
Sbjct: 239 YIWSIIEDVTEQRKSQEAIWRHANFDMMTGLPNRRMFYERLERDILSSAVEER-RLAVIF 297

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D D +K+IND  G   GD+VL    RR+   L+  D++ RLSG+ F +IL S  +  +I
Sbjct: 298 LDFDNFKEINDAFGHDKGDEVLREAARRLKSHLRESDVIGRLSGDEFTLILRSFRDDQEI 357

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            +    +  +++ P       +  +AS+G A +      + E++++A+ AMY AK +G  
Sbjct: 358 DNVVQRLLATLSEPYRFGADILHASASVGIAVYPDDGAAADELIRHADQAMYEAKAQGQG 417

Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F        S R  +  +L  A+   +  L Y PI+ L   E++  EAL++W+HP+
Sbjct: 418 RFSHFHRELQEEASHRSRMAMELRHALVEKQFRLYYQPIVALDSGEVLKAEALLRWEHPR 477

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I   +F+ +AE+   I AI  ++ E  A  +  W      PPI + IN +  +    
Sbjct: 478 LGLIGGGDFIPVAEQAGSIHAIGQWVFEEAANQVARWDRA-GCPPIQLGINRSPVEFRRP 536

Query: 809 E-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +   +     +++     SR  +  +E +++      R  L +L +IG  L LDDFGT  
Sbjct: 537 DNALDAWTTQLAQLGLCGSRFVVEITEGLLVEQTPVVRGQLEQLGRIGSGLALDDFGTGY 596

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL     D +K + S + G     + +A+  ++I MA+ +   +IA+ I  E    
Sbjct: 597 SSLSYLRKFDVDFLKIDRSFVQGLAPGSEDLALCEAMIVMAEKLGIKVIAEGIETEQQRD 656

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L   GC + Q      P+   +  + L +
Sbjct: 657 LLAAAGCHFGQGYWFGRPMPAEAFTRRLLQ 686


>gi|303241210|ref|ZP_07327717.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302591221|gb|EFL60962.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 565

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/438 (30%), Positives = 230/438 (52%), Gaps = 8/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + KKS++ +   A+ D LTG+PNR+  L+++  IL    T +N++ + + +D+D +K +N
Sbjct: 125 KLKKSMKELKKFAYYDFLTGLPNRRFMLEKIEDIL---KTSNNIKFSFLFLDLDNFKMVN 181

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D++G   GD +L ++   +   +   DI+ RL G+ F I+L +  +   I + A ++   
Sbjct: 182 DIMGHDYGDQLLKNIASELKNCMDESDIVGRLGGDEFLILLSNIYSKDTIENKAKSIMNL 241

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +   N+  +E  +TASIG   +         + KNA+ AMY AK +G N    F     
Sbjct: 242 FSRQWNICGKEFFITASIGMVIYPFDGTDLQTLYKNADTAMYQAKEKGKNCFLFFCQDMN 301

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +++ ++  +  A++N E  + Y P I +   EI G+EAL++W+HP  G I  ++F+
Sbjct: 302 DKVSEKMEMENKIRKAIKNREFVVYYQPQIDIETMEIKGVEALVRWNHPTEGIIQPAKFI 361

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE    I  I+ F++    + + +W        I I +N+ SKD L      G+  +I
Sbjct: 362 PIAEASGQIVEIDEFVMRTACKQLKAWIASGIKT-ITISVNLTSKDFLHENFTVGLNEII 420

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    + ++L  +ES+VM + + +  +L  L+ IG+ ++LDDFGT  S L+YL  +P 
Sbjct: 421 KDTGIEANYLELEITESLVMKDLDVALGILKNLKAIGVKMSLDDFGTGYSSLNYLKKLPI 480

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S M   TE     AI  SII +A  +  T+IA+ I  +  ++ +    CD  Q
Sbjct: 481 DTIKIDKSFMNEITEDSKEEAIAESIIALAHKMNLTVIAEGIETKKQLEFIKEHKCDKAQ 540

Query: 937 DSHVASPLGFNSILKLLK 954
             + + P+    I KLL 
Sbjct: 541 GYYFSKPIPVEEIEKLLS 558


>gi|325527394|gb|EGD04745.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. TJI49]
          Length = 749

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/568 (23%), Positives = 248/568 (43%), Gaps = 11/568 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-L 453
             +Q +    E   L V    + +         V + P    ++ +    +   +    L
Sbjct: 181 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVVASNPSANRMMRVKGDLVGRRLSTVIL 240

Query: 454 PYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510
             +H +              +      L Y      AD    W+     P+    +    
Sbjct: 241 RKLHEDGTPIAPEDWPSRRALESATPMLGYTVGFGLADGDIIWVRGNAVPIVKPGDTQAE 300

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVM 569
             +   NDI   +++ + +   A +D LTG+ NR+   DR+  +           R  ++
Sbjct: 301 SVLVSFNDIGPVREAQQQLRYLATRDALTGLYNRRWLADRMREMFGRRDAASGPARIAIL 360

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   ++  +
Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAMRLEGCAGGRHALTRVGGDEFVILVDDCDDPER 420

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +A  A  +  +IA P  +   E  +  SIG +        ++ +++NA+ AMY AK RG 
Sbjct: 421 LAVLARQVIDAIAKPFAVANNEYWLGVSIGISISPRDGDDAATLMRNADSAMYDAKQRGR 480

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           NH   F        +    I++ L  A+ ++ L L Y P++       VG EAL++W  P
Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARSGRTVGAEALLRWTSP 540

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +   D
Sbjct: 541 ELGPLSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFHD 599

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L E +   +++T   P+ ++L  +E ++M + +    +L  L  + + +++DDFGT  
Sbjct: 600 -GLVESVDRCLAQTRLDPAALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  E    
Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQSW 718

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L ++GCD  Q    + PL      + L
Sbjct: 719 FLQQIGCDMQQGYLFSRPLDPADYARRL 746


>gi|218530951|ref|YP_002421767.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218523254|gb|ACK83839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 954

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 129/570 (22%), Positives = 246/570 (43%), Gaps = 23/570 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +     +   A+      +  +D     +        + G+ + ++          +
Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRP-------GM 443

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL---RYI 513
            I D                  ++ E  ++   +      IR   +            +I
Sbjct: 444 SIRDVARLVEASSDSGRAIDLLVEQEALLQRGLSASLCCPIRTDCIVALKQQPTAEGGWI 503

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D+T++ ++   I+  A +D LTG+ NR  F +RL                 + +D+
Sbjct: 504 ATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDEGAGAGFATLCLDL 563

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----SLK 629
           D++K++ND LG  +GD +L S+  R+   L+  D++ARL G+ F I+             
Sbjct: 564 DRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHARRD 623

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            +  A  +  +   P  L    +TV  SIG +       +  ++LK+A+LA+Y AK  G 
Sbjct: 624 ASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKATGR 683

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F          R  ++ DL  AV N E  LV+ PI++L  + I   EAL++W HP
Sbjct: 684 GCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWRHP 743

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S ++F+ +AEE   I  I  ++L +   +  +W        I + +N+++    +
Sbjct: 744 ERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQFKN 798

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +   +   ++ +     R++L  +ESV++ +   +   L  L+++G+ + +DDFGT  
Sbjct: 799 AAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGTGF 858

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL   PFD +K + S +           I+RS++ + +++  T  A+ I  E  ++
Sbjct: 859 SSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQLE 918

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +L   GCD  Q    + P+   +I +L+  
Sbjct: 919 QLRLEGCDEGQGYLFSRPVPSATIRELVTA 948


>gi|264680436|ref|YP_003280346.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262210952|gb|ACY35050.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 666

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 134/588 (22%), Positives = 253/588 (43%), Gaps = 16/588 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++  V      +Q I    ER                           +A ++
Sbjct: 90  VLKGVVALMTDVSHHHLATQQIRDSEERMR-KFAAITTEAIVMHRDGIITDGNDALARLV 148

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G + G + G     L Y+    R      L +    R  RL+    +   + Q   + I 
Sbjct: 149 GYSLGELRGTP--VLDYVAPEAR---LRALQNMRSEREDRLESV--IMHKNGQLIPVEIE 201

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              M          I +  D+T   ++ + +      D LT +PNR      L   +  +
Sbjct: 202 ACTMPGEKDR--HRIVLLRDLTASLQTRQHMDYLTQHDLLTHLPNRARLNHLLADAIARA 259

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A  +  R  V+ +D+D++K +ND L    GD +L  L +R+   +   DI+AR   + F 
Sbjct: 260 A-GEQSRLAVLSLDLDQFKAVNDSLSHQAGDLLLCELAKRLRSTVGAQDIVARTGSDDFV 318

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L      L+       +R +   P  +   ++ ++ S+G A +       + +L NAE
Sbjct: 319 VVLPDNPGLLETEALLTRLRATAEAPYLIEGTQLVISVSVGIAMYPKDGKCPASLLSNAE 378

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM  AK RG +  + +  +       M+  ++ L  AVE  E  L Y P   +   E+ 
Sbjct: 379 AAMQMAKSRGRSFSQFYTPALESRATRMLMQEQMLRNAVERGEFELHYQPQTLMQTGELS 438

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G +S  EF+  AE   +I A++ ++L +  R   +W+ Q   P I +
Sbjct: 439 GFEALVRWKHPHRGLVSPDEFIGFAENRGLIAAVDRWVLYQACRQARAWQQQ-GFPAIPV 497

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++++    ++ + +   ++ T      + +  +E+ +M +  + +  L  L+ +G+
Sbjct: 498 AVNLSAQEFRQRDVVKEVAQALADTGLDACYLHIEVTETTLMLSGNQMQQTLHALKALGV 557

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L+YL   P D +K + S +T         AI+ +I+ M +++   I+
Sbjct: 558 GLAIDDFGTGYSSLAYLRKHPIDRLKIDRSFVTDLPHNPDAAAIVNAIVQMGRSLHLEIL 617

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+ +     ++ L  MGC  +Q   V++PL        + +   L++ 
Sbjct: 618 AEGVESTEQLQLLREMGCAMMQGFLVSAPLSAEQASAWMSQHCQLLQR 665


>gi|322420149|ref|YP_004199372.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320126536|gb|ADW14096.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 773

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 222/450 (49%), Gaps = 6/450 (1%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            ++   I     + E K+  E +   A  D LT +PNR    DR++  L  +        
Sbjct: 184 NNLAHGILSLRIMAEHKRYEEQLAYQATHDPLTALPNRNLLADRISQALAWAQRHRRW-I 242

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D +K +ND LG   GD +L  +  R+ E ++  D LA   G++F ++L     
Sbjct: 243 AVLFVDLDFFKFVNDSLGHGKGDQLLKMVAERLSERVRQVDTLAHQGGDKFVVVLTDLRG 302

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           + +       +R++I++P  +  +E+ ++ SIG   +      +  ++KNAE+AMY AK 
Sbjct: 303 NEEADRAVHVIREAISLPFLMDGQELVISCSIGITVYPKDGEDAQTLVKNAEVAMYRAKE 362

Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           +G N    +    +   + R+ +++ L  A+EN E  L Y P   L    + G+E LI+W
Sbjct: 363 QGRNCFRYYTRELNERVASRMSMEKHLRKALENEEFELWYQPQADLNTGRLSGMEGLIRW 422

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            + + G +    F+ +AEE  +I  I  +++         W+D     P+ + +N++ + 
Sbjct: 423 RNAELGMVQPGSFIPLAEETGLIVQIGEWVVRTACLQNRRWQDAGL-SPLTVAVNLSPRQ 481

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D EL   +  ++ +T   P  + L   ES+VM + E +  +L  L+ +G+ L++DDFG
Sbjct: 482 FRDRELTGVIAGVLRETGLDPRYLGLEIVESMVMHDVESAAAMLNELKALGVKLSMDDFG 541

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   PF  +K + S +          AI +SII MA N+  +++A+ +  E 
Sbjct: 542 TGYSSLSYLKRFPFAKLKIDLSFVRDIMTDPGSAAIAKSIISMAHNLNLSVVAEGVETEG 601

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++ L   GC+ IQ  +++ PL       +
Sbjct: 602 QLEFLRAHGCNEIQGYYLSRPLPAAEFEGM 631


>gi|228940824|ref|ZP_04103384.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973744|ref|ZP_04134322.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980300|ref|ZP_04140611.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228779405|gb|EEM27661.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228785990|gb|EEM33991.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818838|gb|EEM64903.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 883

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 159/808 (19%), Positives = 323/808 (39%), Gaps = 64/808 (7%)

Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
             ++   +    +           W    +I      L+ +  L     L  +    I  
Sbjct: 81  VFYMFFLFFCLIAFSYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 138

Query: 262 SSSLIIFLFMYLHWNRWHAKVG--------------YITFSGIACIAILFCMSFYYPMVT 307
            S   +FL            +                  +  I  +      ++ Y  + 
Sbjct: 139 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 198

Query: 308 ASIARITLASIVLYYTYFIIYHGMKG------YERAVLLI---------PAWILIFIWFI 352
             ++  T+  + L Y   I+   + G             I                   I
Sbjct: 199 NHLSTETITLLRLLYRIPILLIAIAGSISEDHNSHKNYFIVNPIIGKKALVVFPYLAVAI 258

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391
            +   + ++  +  +        + ++I      +Q                        
Sbjct: 259 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTVRTS 318

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              + S+ +    ++         D ++  D+    +      + +LG  +  + G    
Sbjct: 319 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGTFLNVNKAGSVLLGAPTDELLGETC- 377

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I   D+      L+         LQ   +    D   +++ + I P+   +G I  
Sbjct: 378 -FSIILDEDKHKLALALEKVKQQESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 433

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DIT  KK  E I   AF D +T I NR  F  +L  ++  +   ++    ++ +
Sbjct: 434 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYL 492

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   + 
Sbjct: 493 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 552

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689
                + + +     + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK    
Sbjct: 553 QLCNQLFECMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 612

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    ++     R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ 
Sbjct: 613 VSIYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 672

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF+ IAEE   I +I  + LE+  + +  W        + I +N+++K+    +
Sbjct: 673 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 731

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + + + ++ T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S 
Sbjct: 732 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 791

Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L
Sbjct: 792 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 851

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C +IQ  + + P+  ++  +LL+ 
Sbjct: 852 QKNKCQFIQGYYYSKPIHIHAFTELLEN 879


>gi|313202471|ref|YP_004041129.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441787|gb|ADQ85893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 936

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 143/573 (24%), Positives = 262/573 (45%), Gaps = 15/573 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            + V         I          +  + D +  +D    R+         LG+   ++ 
Sbjct: 364 ARDVTEAKLNELEIVHREIELRTLIDNTPDAITRFDRDARRIFVNNRKLEKLGMERDAIL 423

Query: 447 GPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   +     +          + ILD     + G ++        + +     IRI P  
Sbjct: 424 GKKPSE----YPGGTVFSQYEQKILDVVATGQPGFMEMT--GTTPEGETWHSHIRIVPEL 477

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +   + +  DITE     E +   A+ D+LT +PNR  F DR++ +L  +     
Sbjct: 478 DEQGQVQHILAVERDITELVAYRERVYYLAYYDSLTNLPNRTLFNDRISQVLMEAQWSKQ 537

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  VMV+D+D +K IND LG  VGD++L +   R+   ++  D +AR+ G+ F I+L  
Sbjct: 538 -KFGVMVLDLDHFKSINDSLGHLVGDELLCATADRLQMAIRTYDTVARMGGDEFAILLPD 596

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +A  A  + + IA P ++  +E+ ++ S+G A++         + K A+ AMYH
Sbjct: 597 IRKPDDLATIANKIVQVIAQPFHIQGKELFISTSVGIATYPLDGEDQEALYKCADAAMYH 656

Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G ++ + +     S  S+ + I   L  A+ N+E  L + P + L+  +++G EAL
Sbjct: 657 AKSMGRSNYQFYSHDLGSKASEYIAIGTSLRQALRNNEFVLHFQPQMDLLTGKLLGAEAL 716

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G +   +F+ +AEE  +I  I  ++LE     I+      N   + + IN++
Sbjct: 717 LRWNHPLRGLLPPDDFIGVAEESGLIVEIGEWVLENAFNAIVELNRLRND-KLTVAINLS 775

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++  L N+L   +  L+ KT   P+ +KL   ES+++        +L   + +GI++ +D
Sbjct: 776 ARQFLYNDLLAAVSRLLEKTGCLPAWVKLEIRESLLLEENPDVMAVLNAFKAMGITIAID 835

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DF T  S LSYLG  P   VK +   M      + R  ++ +II +A+ +   ++A+ + 
Sbjct: 836 DFCTGYSALSYLGQFPVRQVKIDRLFMQDVVQQQDRAELVNAIIRIAQALHLELVAEGVE 895

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               +  L   GC   Q   +  P+    + +L
Sbjct: 896 SASQLAFLREKGCTMAQGFFLGKPMLLEELKQL 928



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 7/147 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +++ +         + +   +    V  + DI   +D    R+  +     + G+  
Sbjct: 106 NLALVRDISTRKNLQDQLEASEAKFRDLVEHAPDIFIRYDRDCRRIFISQAYEEVYGIPL 165

Query: 443 GSMHG--PIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               G  P   W   +    + +     +             E +  A D Q+    ++I
Sbjct: 166 TQALGKKPTEVWGKAWTTPAEYERQLQEIMRSRKPG----NIELQWVADDGQYVCKSLQI 221

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSL 526
            P  ++NGD++  + I  DI++++ + 
Sbjct: 222 APEFDANGDVVSVLSITRDISQRRAAE 248



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++ + +         +    E Q   +     +VW  D     +      A     A  
Sbjct: 235 LSITRDISQRRAAENALRLRDEYQRALIDNFPFMVWLKDRQSHLLAANTAYAE---WAQA 291

Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +    +     + +   +        D  V           +V+    +  WM I   P+
Sbjct: 292 ASTRDVDGKTDFDLFPEEIAKAHIASDQVVLESGKPWHAVDQVKDQHGRQRWMEIYKSPV 351

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
              N ++   +G A D+TE K +   I+  
Sbjct: 352 R-VNDELKGIVGYARDVTEAKLNELEIVHR 380



 Score = 42.2 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 8/125 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465
            S A+    + ++  D          +    LG +   +          I    D+  +R
Sbjct: 7   LSFALNKVTESIFLIDASSRIRYVNQECCRTLGYSQQDLLAMRVAD---IDPTVDQMVWR 63

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               +        L +E R      +   + I         G     + +  DI+ +K  
Sbjct: 64  DHWQALTAEI--SLTFESRHLTRQGKLLPVEINAN-YFEYAGTAYN-LALVRDISTRKNL 119

Query: 526 LEGIL 530
            + + 
Sbjct: 120 QDQLE 124


>gi|269127758|ref|YP_003301128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermomonospora curvata DSM 43183]
 gi|268312716|gb|ACY99090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermomonospora curvata DSM 43183]
          Length = 943

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 155/775 (20%), Positives = 305/775 (39%), Gaps = 46/775 (5%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSG--ELLIWRACSEIALSSSLIIFLFMYLHWNRW 278
              +A + +     +FG L  L         L +      I L    + F+       R 
Sbjct: 163 YVCVAALFVFGWVAEFGTLYHLSGESPAEFVLELLYPLVGIVLLWGALPFVLGAARPYRP 222

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASI-ARITLASIVLYYTYFIIYHG------- 330
                Y+  +      ++                        L       +         
Sbjct: 223 GVWTAYLALTAFVIADVVSMAVRLRGDAAPVGDIGDAARVAGLLALGLAPWITPPPRGDE 282

Query: 331 --------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND---IIQPALVGGLVLIV 379
                     G  R  ++ P      +            L          +L+ G  ++V
Sbjct: 283 PAAEDAEFEGGLPRGRMIGPGIAPAAVGAAAAIFVAGHSLTGSRGMEPVVSLIAGSAVLV 342

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L     +Q         + + +  E          D+V   D+       +        
Sbjct: 343 MLARLAGLQR--ENDGLRRAVGAGEEHFRALAESINDLVLICDLNGVVQYVSDKAHRTYE 400

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G  R+   +IH  D  +   +   F+   R  L+   RVRAAD  +      +
Sbjct: 401 HVPDDLLG--RSVTEFIHPEDLPHVEEVYGEFLTTDRPALRISCRVRAADGTWLPTESTV 458

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              ++S     R +    D++EQ      +    F D LTG+PNR  F +R+  ++    
Sbjct: 459 SRYTSS-----RVLITTRDLSEQAALQRQVTHLTFHDGLTGLPNRAYFEERVHEVVGREP 513

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           + +     V+ +D+D +  +ND  G A GD VL    RR+   ++  D +AR  G+ F +
Sbjct: 514 SPET--VAVLFVDLDGFTAVNDSAGHAAGDQVLAQAARRLRSAVQADDTVARWGGDEFAV 571

Query: 620 ILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTS------SKITSSE 672
           ++ + + +  I + A  + + + A P    ERE+ ++ASIG A           + + +E
Sbjct: 572 LVENSDEARSIVELAERLLRVLTAEPYRAGEREVVLSASIGIAFADDPPSGDSERRSGAE 631

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRL 730
           +++N +LAM  AK  GG  VE +           ++   DL  A+   +  + + P++ L
Sbjct: 632 LIRNGDLAMARAKELGGGRVEVYAAHMHTDVVRRLELGADLQRALAEEQFAVEFQPVVEL 691

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               + G+EAL++W      ++   +F+  AEE  ++  +  ++L +  R +  WR ++ 
Sbjct: 692 DTSRVTGVEALVRWWRGS-ESVPPQDFIRPAEESGLMITLGDWVLRQACRQVARWRAESW 750

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N  ++ +      E +  ++ +T   P  + +  +E+V++ +  ++   L  
Sbjct: 751 QVD--LSVNFTARQIAAPRFVESVAQVLEETGLPPQALTVEVTEAVLVEDAGQTVERLSA 808

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR++G+ L +DDFGT  + L++LG +P D +K + S + G    E R  + R+I+ +  +
Sbjct: 809 LRELGVRLAIDDFGTGYASLAHLGRLPVDVIKIDPSFVAGLGRDETRTLLTRAIVRLGHD 868

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +  T++A+ I     ++ L +M C   Q   VA P+       LL+     V++T
Sbjct: 869 LGLTVVAEGIERPEQLELLRQMNCPRGQGFLVARPMAPGPAESLLRTNLTTVQDT 923


>gi|206601940|gb|EDZ38422.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 702

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/731 (21%), Positives = 293/731 (40%), Gaps = 66/731 (9%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-----RWHAKVGYITFSGIACIAILFC 298
              +  L+       +  + +   F       +      W          GI  +  +  
Sbjct: 5   PSYNFWLVSLSVFIAVTAAYTSFSFASRITSTSGKIRLLWLGGGSVAMGVGIWSMHFIGM 64

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           ++F  P       R TL S+++          M    R            +      M  
Sbjct: 65  LAFRMPFPVHYDVRTTLLSLLMAIVVSGFALRMTSLPRIGPANLLMAGTLMGLGIGAMHY 124

Query: 359 TKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           T  +  ++   I+       + I+I +  +     + +   S    +D  ++ L+ L  G
Sbjct: 125 TGMMAMEMPMAIRYDPFLVFLSILIAVSASTAALRIVSTLRSDVAVADMPKKFLSALIMG 184

Query: 416 DIVWDWDIVRDRVTTTPDIATI-LGLASGSMHGPIRNWLPY------IHINDRDNFRTIL 468
             +           T    A   L ++   +      WL          I       +++
Sbjct: 185 AAI------SGMHYTGMAAARFPLRMSGTPLKNSSDAWLAVTIGLASFMILAIGLILSLV 238

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           DS +  R                                     +G        K + E 
Sbjct: 239 DSHLATRTA---------------------------------GLVGSL------KAANEK 259

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT +PNR    DR+   +  +   D    +V  +D+D++K IND LG + G
Sbjct: 260 LHYLALHDGLTRLPNRTLLEDRVDQAIRHARGVDGA-FSVFFLDVDRFKPINDSLGHSTG 318

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VL  + RR+   +   D +AR+ G+ F I+   + +  K+ + A  +R  +A  + + 
Sbjct: 319 DKVLQQMARRLSGTVGPEDTVARIGGDEFVIVFPEQKDPGKVHEIARKIRDCVAENMEVD 378

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
            + ++VT SIG + +     T   +L +A+ AMY+AK +G   ++ +      S  + I+
Sbjct: 379 GQSLSVTTSIGISLFPHDGTTFRTLLASADSAMYYAKSKGSGQIQFYSGELNDSAALRIE 438

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              DL   +E  E  L Y P + L   E+  +EAL++W+HP+ G +    F+  AEE  +
Sbjct: 439 MENDLRRGIEKEEFVLYYQPKVTLATGEVESVEALVRWNHPEKGILPPHYFIPRAEETGL 498

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++++R  R+ + W+       + + +N+++   ++ +L + +   +  +   P 
Sbjct: 499 IIPLGRWIMDRACREAVIWQQA-GFSRLRVAVNLSALQFINQDLMKEILDALESSGLPPE 557

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES++M +PE +   L  +R+ G+ + +DDFGT  S  SYL   P D +K + S
Sbjct: 558 CLELEITESLLMEDPEGAMRTLSGIRQKGVHVAIDDFGTGYSSFSYLKKFPLDRLKIDRS 617

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +T         AI+R+II +  N+   +IA+ +  +  ++ L  M CD  Q    + PL
Sbjct: 618 FITDICDNPNDAAIVRTIITLGHNLNLKVIAEGVESQAQLEMLKAMECDAYQGFFNSRPL 677

Query: 945 GFNSILKLLKE 955
               + + LKE
Sbjct: 678 PPGELAERLKE 688


>gi|254519477|ref|ZP_05131533.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
 gi|226913226|gb|EEH98427.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium sp.
           7_2_43FAA]
          Length = 743

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 149/553 (26%), Positives = 276/553 (49%), Gaps = 11/553 (1%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRT 466
            LAV GS DI + W++ ++ ++    I   L +     +    ++W  +I  +D D +  
Sbjct: 195 RLAVEGSKDIAFWWNVNQNIISIDYSIREYLEIKGEGDVLISDKSWKKFILEDDIDLYNK 254

Query: 467 ILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            ++  +  ++      ++R+ + DN+  W+  + +     NGD L   G  +DIT++K+ 
Sbjct: 255 KINKVLNSKKDEFYSIDYRILSKDNKVVWLQSKGKKTLEKNGD-LFIHGAFSDITDRKEK 313

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   +F D +T IPNR+ F+  +T  ++      N +   + ID+D +K +ND  G 
Sbjct: 314 EIEINYLSFNDEVTRIPNRRFFVREVTNHINN---YPNEKIAFIFIDLDNFKYVNDTYGH 370

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L+   + I  +     + AR  G+ F I+  +     +I      + K ++ PI
Sbjct: 371 DAGDLLLIEFAKIIKNMKIKDSLFARYGGDEFIIVQYNIQEKNQIKYILDNIIKKLSNPI 430

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            + ++EI  T SIG + +         +LK A++AMY AK  G N  E F +        
Sbjct: 431 IINDKEIFCTLSIGVSVYPIDGGDMPILLKRADMAMYLAKVNGKNRYEFFDIKILEILNR 490

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++ L +AV+ SE+ ++Y P I++  EE++G E+L++W+    G +S SEF+ IAE 
Sbjct: 491 EFDIEKGLRVAVDKSEIKMLYQPKIKVDTEEVIGFESLVRWNSKSLGIVSPSEFIPIAES 550

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  +++    R         N     + IN++   + D ++   +   +     
Sbjct: 551 SGLIIPIGKYIINESFRRCKELT-LKNNKKFKMAINLSEVQIRDEDIVSFISESLKFYDL 609

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S   I+   +ES++M + ER+   L +L+K+G+SL LDDFGT  S LSYL  +P D +K 
Sbjct: 610 SAEYIEFEITESIIMKSAERNISTLEKLKKLGVSLALDDFGTGYSSLSYLRTLPIDVLKI 669

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S + G    EK   I+ SI+ ++  +   ++A+ +  +  +  L R+ CD IQ  + +
Sbjct: 670 DKSFIDGIVIEEKSEYIINSIVELSHYLSLLVVAEGVETKEQLDFLKRISCDVIQGYYFS 729

Query: 942 SPLGFNSILKLLK 954
            P+ F+  ++++ 
Sbjct: 730 RPVEFDEAIRMIS 742



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 73/182 (40%), Gaps = 10/182 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I IF     + + +    DN     +++  ++L++++    + +        ++   S  
Sbjct: 9   IFIFASLCLIILIVKSNFDNVTSLLSIMLFIILLLMIRLVYINKKYEKLYKLAE---SSK 65

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            R  +A+      +W+W+   +++  +  I  IL +           W  +I  ++R++ 
Sbjct: 66  RRYRMAIDALECAIWEWNSENNKLYMSKKIKDILKINKD--IESFDEWFSFIVEDEREDI 123

Query: 465 RTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGIANDITEQ 522
           +  +++ +  R       E  +     +   + ++    + N   ++    G+  DITE+
Sbjct: 124 KIFIENIIHNRILDNFILESSIVDFSGEKLLLKVQGNGKVRN---NVFYLSGLIVDITER 180

Query: 523 KK 524
           K+
Sbjct: 181 KR 182


>gi|119898518|ref|YP_933731.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119670931|emb|CAL94844.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 889

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 146/718 (20%), Positives = 298/718 (41%), Gaps = 27/718 (3%)

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           R    +  +  L++    Y    R   +  +     +   A L   ++  P     + R 
Sbjct: 183 RLIGLLLTAMMLVVIGLRY----RASVRQRHALLRLVDSEARLRAFAYAMPDTAFILDRE 238

Query: 314 TLAS-IVLYYTYFIIYHGMK--GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
                +         Y   +  G              F+  +   +     +        
Sbjct: 239 GRYIEVFGMGRSLTPYGHERMVGATVFDYFPRPQAENFVGVVRDALT-RGEVVRYEYSLR 297

Query: 371 LVGGLVLIVILI----GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           L GG       +        +  V       +         ++A+ G+ D V   D+   
Sbjct: 298 LAGGTRWFEARVAPVDSMQRVVWVSRDVTERRRAEERIRLHAVALEGTRDGVMVTDLHGR 357

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +      +I G +     G     L    H  D   +R I  + +    G  Q E   
Sbjct: 358 IQSVNRAFTSITGYSEEEAIGKTPGLLKSGRH--DPSFYRGIWSALLSG--GYWQGEIWN 413

Query: 486 RAADNQFHWMIIRIRPMSNSNGDIL-RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           R  + +     + I  +    G     Y+ +  DI++ ++  E +   A  D LT +PNR
Sbjct: 414 RRRNGEVAPHWMSISAV-GEQGHPYEHYVAVFTDISQLRQFEERVSHLANYDLLTDLPNR 472

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               D L T +  +    + +  VM++D+D++K +ND LG A+GD++L  +  R+ + L+
Sbjct: 473 LRMSDCLETAIAAARRS-HTQVGVMLVDLDRFKNVNDALGHALGDELLAGVAERLRKHLR 531

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASW 663
             D L R  G+ F ++L    ++ + A  A  M  ++  P  +   +E+ + ASIG + +
Sbjct: 532 HGDTLGRYGGDEFLLVLEQLRDAGEAAAVARTMNSALDQPFLMRGGQELYIKASIGISLY 591

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELY 721
                T++E++K+A+ AMY AK  G N    ++       ++R+ ++  L  A++ S   
Sbjct: 592 PEDGDTAAELIKDADAAMYEAKRLGRNTFRYYQEDLTRTANERLALESRLRRALDESMFE 651

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y P++ L   E++G EAL++        I  ++F+ + EE  MI  +  ++   + R 
Sbjct: 652 MYYQPLVALNSGEVLGAEALVRLRPDGGPRIGPADFIPVLEESGMIAELGRWVQREVCRQ 711

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             +W D      + + +N++++++    + + ++ ++++T +   ++++  +ES +M   
Sbjct: 712 GRAWLDAGYDFQL-LTLNLSAEEVRRGGVVDNLREVLAETGFPAEKLEVEITESGLMQRG 770

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
             +   L  L+ +G+ L++DDFGT  S LSYL   P + +K +   +T     +  + + 
Sbjct: 771 SEALDFLYELKGLGVRLSIDDFGTGYSSLSYLKLFPVNKLKIDRGFITDIPEDQNDVQLT 830

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKER 956
            +II +A+N+   ++A+ +  E     L   GCD  Q    + P+       + L  R
Sbjct: 831 TTIIALARNLGLDVLAEGVETEAQRTFLAEKGCDAYQGYLCSPPVEAAVFQERFLHGR 888


>gi|254563188|ref|YP_003070283.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270466|emb|CAX26466.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens DM4]
          Length = 700

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 143/575 (24%), Positives = 259/575 (45%), Gaps = 23/575 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449
           A       +     R   A+      +  +D  +  V        I GL   ++H  +  
Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDSEQRLVVWNRRYLGIFGLPDDAVHVGMGQ 183

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505
           R  +  +           +D+     R  L  +         AD +   +I R  PM++ 
Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVIHR--PMADG 241

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    ++    DITE++++   I+  A  D LT +PNR    +     L    TD    
Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTRLREVGAEWLAALRTDAEAP 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND  G AVGD +L ++  R+   ++  D++ARL G+ F  +L    
Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684
           ++   A  A  + +++A P  L    + +  S G A            +LK A+LA+Y A
Sbjct: 357 DAAAAAALAERLIETVAAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G   V  F         +R+ ++ +L  A+      L Y P++ L D  I G+EALI
Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALAQDRFELHYQPLVDLSDNRITGMEALI 476

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S + F+ +AEE  +I  I  ++L +  RD + W  +     I + +N++ 
Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L      + +   ++ +    SR++L  +E+V++ + E +   L  LRK+G+ +++DD
Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S +SYL   PFD +K + S +     +    AI+R+I+ +  ++  T + + +  
Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVET 651

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           E  +  +   G   +Q    + P   + I  LL+ 
Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686



 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E   +A     D +W  D        +     +LG +   + G  R+ L      
Sbjct: 3   LNDLEELARIAF----DWLWATDAEDRFSYVSSGAERVLGRSPADLIGLTRSALVC---E 55

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                  +    +  RR      +  R  D    W  I  RP  +  GD L Y G+ +D+
Sbjct: 56  GEGESLAVYRETITARRPFRDLTYVYRHPDGTPRWFEISGRPHLSPEGDFLGYHGVGSDV 115

Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           TEQ +     +E     + Q       NR+ F   L  +
Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146


>gi|157692015|ref|YP_001486477.1| cell signaling protein [Bacillus pumilus SAFR-032]
 gi|157680773|gb|ABV61917.1| possible cell signaling protein [Bacillus pumilus SAFR-032]
          Length = 807

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 158/811 (19%), Positives = 326/811 (40%), Gaps = 57/811 (7%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVN-------RSSMLIPTFAMAWVVLGYISIDFG 237
             S+  +   +  V + LA +  +            +  + +   A+   +  +     G
Sbjct: 5   TGSYNGWLVFLSIVLAALASYSALQLASRVAQSSGAKKKVWLIVGALIMGMGIWSMHFIG 64

Query: 238 FLSKLVNLPSGELLIWRACSEIALSS---SLIIFLFMY---LHWNRWHA----KVGYITF 287
            ++   ++ +G            L+S   SLI F       L   R           I  
Sbjct: 65  MMA--FHVRAGITYETPLLILSILASFVGSLIAFTICIQEQLSTRRLLISSITMGSAICS 122

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
                +  +  +S  Y  V   ++         +  +        G ++   L+     +
Sbjct: 123 MHYLGMESMANVSISYDPVLFFLSFFIATIASFFSLHLFFRLHRSGKKQEDHLLKIVGAL 182

Query: 348 FIWFIGLWMAITKRLDND-------------------IIQPALVGGLVLIVILIGFTVIQ 388
            +      M  T    +                          +G + LIV  +      
Sbjct: 183 VMGGAVAGMHYTGMAASTMFFHSDGQSSGGGSLELSPFSLSIFIGLMTLIVQTLMIFGAY 242

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                   +  +  + +R    +  + D +    + R  ++       IL + +  +   
Sbjct: 243 IDHRIMKQADKLKENEQRFQSLIKHNIDGIIVLSVNRKVLSANDSGKQILKMCNSWIGDD 302

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +  +   +   D      + + F+   +  +  E  ++AAD +F++  +   P+   N  
Sbjct: 303 VSQY---VMPTD------MWEEFISESKKAITREAELKAAD-RFYYYHVTYIPVH-VNNS 351

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +     +  D+T+Q+ + + I   A  D LT +PNR+  ++ L+ +L  +  +      V
Sbjct: 352 LDSIYLVLKDLTQQRIAEKEIHVMAHYDALTELPNRRHAINHLSDVLS-AQEETGTSTAV 410

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNS 627
           + +D++++K IND LG  +GD +L +   R+ + L     +ARL G+ F +I     +++
Sbjct: 411 LFLDLNRFKIINDALGHNIGDLLLKAAANRLTQCLPDNGFIARLGGDEFLMIFPDMGHDT 470

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            KI   +  + +    P  +   ++  + SIG A    +     E+++ A++AMY +K  
Sbjct: 471 QKIEQLSQNIIRQFERPFFIQNHQLITSISIGIAISPQNGKDGMELMRKADMAMYLSKKH 530

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             +  E F  S  RS    +  + +L  A++  +  L Y P +     E+ G+EAL++  
Sbjct: 531 KQSRYEFFTESMERSSEDRLNRELELRDAIQREQFVLHYQPQVSAKTREMTGVEALLRMK 590

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P     S   F+ +AEE  +I  I  ++++   R   +W D      I + +N+++K  
Sbjct: 591 APDGSLKSPEAFIELAEESGLIIDIGRWVIDTACRQAKTWYDNG--LKIPVAVNLSAKQF 648

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L + ++  + K   +PS ++L  +ES+ M N ++S+ +L  L+ +G+ +++DDFGT
Sbjct: 649 NSEDLIDLIKLTLKKYDLTPSLLELEVTESMTMDNIKQSKQVLTSLKHLGVRISIDDFGT 708

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P   +K + S +       K   I  +II M   +   +IA+ +     
Sbjct: 709 GHSSLSYLKDLPIHRLKIDKSFIEDILNDSKSEQITGAIIAMGHQLSLEVIAEGVETFAQ 768

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + L+  GCD +Q  + A PL  + I K + 
Sbjct: 769 AQLLSAQGCDDLQGFYYAKPLPASDIEKFIA 799


>gi|270158623|ref|ZP_06187280.1| sensory box protein/GGDEF domain/EAL domain-containing protein
           [Legionella longbeachae D-4968]
 gi|289166555|ref|YP_003456693.1| regulatory protein (GGDEF, EAL, PAS and PAC domains) [Legionella
           longbeachae NSW150]
 gi|269990648|gb|EEZ96902.1| sensory box protein/GGDEF domain/EAL domain-containing protein
           [Legionella longbeachae D-4968]
 gi|288859728|emb|CBJ13701.1| putative regulatory protein (GGDEF, EAL, PAS and PAC domains)
           [Legionella longbeachae NSW150]
          Length = 974

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/577 (24%), Positives = 267/577 (46%), Gaps = 9/577 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +++ +     + + I     R  LA   S   V    +    +     +  I+G +  
Sbjct: 397 IGIMRDISERKAYEEKILESETRFRLAFDYSPIGVALVSLEGHWLKVNKTLCDIVGYSES 456

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M     N+    H +D +     +           Q E R    D +  W+++    + 
Sbjct: 457 EML--RMNFQTITHPDDLELDLKYVKQLYDGEIPFYQMEKRYIRKDKKITWILLIGAIIR 514

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N  G  L YIG   DI ++K+  + +   A+ D LTG+ NR    + L   +  +     
Sbjct: 515 NEQGTPLYYIGQFQDINDKKEKEKELSIKAYIDTLTGLVNRNQLENSLNLTILSALRHQQ 574

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V  ID+D +K++ND LG   GD++L  ++ R    ++  DI ARL G+ F ++L  
Sbjct: 575 -QFAVFFIDLDNFKQVNDSLGHDAGDELLKVISDRFRNSIRKTDIAARLGGDEFILVLHD 633

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +    A FA  +   +  PI + E E+ VTASIG + + +       ++ +A+LA+Y 
Sbjct: 634 IKSPEIAAVFAENILNILIKPITIKEHELLVTASIGISFYPADGEDYHSLINSADLALYK 693

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+ +          +  +  K  L  A++N+E YL Y P I +  ++I G E L
Sbjct: 694 AKEEGRNNYQFCTKKINEEIKNKLLFKNALKNALKNNEFYLTYLPKINIQ-KKITGFETL 752

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W++ ++  +S S+ + +AEE+ +I  I+ ++ +       S    +   PI I +N++
Sbjct: 753 LRWENKEYQTVSPSKIIPLAEEIGIINQIDDWIYDTAIDQ-GSHLRTSCHLPIKISVNVS 811

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +K  L  E    +   +++  +    +++   ES++M NP  S  ++  L+  GI + +D
Sbjct: 812 TKQYLQPEFSSSVLNKLNQKQFPAQFLEVEIHESLIMQNPNHSIKVIKHLKDNGIGIIID 871

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           +FGT  S L+YL     D +K +   +    E      ++ +II +A+++   +IA  + 
Sbjct: 872 NFGTGYSSLNYLNQFNADYIKIDPQFIKHIVENFEHQGLVMAIIALARSLNIKVIAAGVE 931

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                  L+++GCD +Q  +++ PL    I + +++ 
Sbjct: 932 SMDQYHLLSQLGCDELQGYYISKPLLAKEISQFIQQY 968



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 116/351 (33%), Gaps = 30/351 (8%)

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
           I+  I +++   S       +    LG             N   G + +  +   I +S 
Sbjct: 70  IYTIIGFLILTISGATFAEYLFNTSLGVDEFFIKIWLFDQNQYPGRMGLNTSVGFILVSL 129

Query: 264 SLIIFLFM---YLHWNRWHAKVGYITFSGIACIAIL----FCMSFYYPMVTASIARITLA 316
             I+F +    ++           +     A +  L    F  S+Y     A    + ++
Sbjct: 130 CFILFQYTDKLFIAILTQVIIFSIMLLGISAVLGYLLKLEFLYSWYQYTRMAIHTSLGMS 189

Query: 317 SIVLYYTYFIIYHGMKGY--------ERAVLLIPAWILIFIWFIG--LWMAITKRLDNDI 366
            + +    ++ +     +        ++ ++L+ ++ILI I  I       I      + 
Sbjct: 190 LLSIA--LWLAWVNNHNFSKFYHDSEDKKIILLSSFILISITGIACLAGFTIAGNSLENQ 247

Query: 367 IQPALVGGLVLI---VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           I+  ++   + I   ++ + + V+  +       +       R       +G+ +   D 
Sbjct: 248 IELIILILAISIGLGILFLYWQVLPIINQLVVVKKEAIDSSMRLQAIFNHAGEGIITIDT 307

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                +  P    + G ++    G        I  + R+     ++ ++         + 
Sbjct: 308 QGTIESFNPAATKMFGYSTKEAVGKNVEI--IIPPDLREKHSAGMEEYLKTHNSTFVGKH 365

Query: 484 RV----RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +       +N+   M I I  M   N    ++IGI  DI+E+K   E IL
Sbjct: 366 SMVIPALRKNNEQFPMEIAITEMQVDN--QYKFIGIMRDISERKAYEEKIL 414


>gi|126664611|ref|ZP_01735595.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Marinobacter sp. ELB17]
 gi|126630937|gb|EBA01551.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Marinobacter sp. ELB17]
          Length = 1020

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 143/560 (25%), Positives = 255/560 (45%), Gaps = 18/560 (3%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
               +     R +     +   +   D     +      + I G A   + G   N L   
Sbjct: 463  EDKVLEAELRIASTAFETHLGIIITDENSIILRANKAFSRITGYAEHDVLGKTPNVLQSG 522

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    F   L + V    G  + E      D + +   + I  +   +G +  Y+G  
Sbjct: 523  LQD--ATFYHYLWARVRE-SGSWEGEIWNLRKDGEAYAEWLTITAICGKSGVVQNYVGTF 579

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DIT++KK+       AF D+LTG+ N+    +RL+ +   + T  N    ++ +D+++ 
Sbjct: 580  HDITKRKKAEREAHRLAFYDSLTGLANKALLEERLSEVCK-ANTRQNTHAALLYVDVEQL 638

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD---- 632
            + +ND  G   GD VL ++  ++G +++  D LAR+ G+ F I+L + N S  +A     
Sbjct: 639  RSVNDARGYEFGDLVLKAIAEQLGTMVRESDTLARIGGDEFAILLSNLNPSQDVAARVTE 698

Query: 633  -FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--- 688
              A  +  +   PI +L+++I V  SIG            + L+ AE A   AK +    
Sbjct: 699  GVADKVLDAFTRPIEVLQQKIQVNISIGITLIDGRSSPVDQQLQRAEQATQQAKEQAKLR 758

Query: 689  ---GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                       + +     V+++E+L  A+   +L L Y P IR    +++G E L++W 
Sbjct: 759  GEKRISFFDPEIQAQVVQHVLMEEELRNALAEEQLVLYYQPQIR-NPNQLLGYEVLLRWR 817

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HPK G +S + F+ IAE+  +I  I  +++E+    + +W+ +     + + +N++    
Sbjct: 818  HPKRGIVSPAVFIPIAEQSRLILPIGRWIIEQACEKLAAWQSEPTTSELSLAVNVSIIQF 877

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              N   E +  ++ KT   P  +KL  +ES++M +PER   ++ RLR +G+  +LDDFGT
Sbjct: 878  QSNNFVEQVGQILEKTGAPPRLLKLEVTESLLMNDPERITEMMNRLRSMGVRFSLDDFGT 937

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S +SYL  +P D +K + S +          AI+ SII +AK +   +IA+ +  E  
Sbjct: 938  GYSSMSYLNQLPLDQIKIDQSFINEVANNLASSAIVESIIGLAKGLNLEVIAEGVETEEQ 997

Query: 924  IKELTRMGCDYIQDSHVASP 943
               L   GC   Q      P
Sbjct: 998  RNWLANHGCQNFQGYLFGRP 1017



 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 69/261 (26%), Gaps = 19/261 (7%)

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLY-YTYFIIYHGMKGYERAVLLIPAWILI 347
            +     +   +   P    + A               II   +     A       +  
Sbjct: 220 MLVARLPVVAGAAVSPGQILTDALARRFIDSGSDSYQVIIEGPIPNDGEARFYAFKRVPG 279

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--------------TVIQHVLAT 393
             + + +    +  L +      +    +L+V +IG                ++      
Sbjct: 280 APYIVVVGEKTSVALQDWHQSLWVGATGILLVAIIGLFFLKQFCRRLSVENALLHENRER 339

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               Q   ++  R    V    D  + +D               L      + G   ++ 
Sbjct: 340 KLLQQNAQANESRLQALVNSIPDSTFVFDEHGRFTFAHAQNKGQLLRPVEKLLG--LHYS 397

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +       F   + + V   +     E+++   D +      R+  +++  G    ++
Sbjct: 398 EVLPPELAARF-DGIKTDVEKSQKMQNIEYQL-FIDGEARDYEARVNALTDLEGQHSGFL 455

Query: 514 GIANDITEQKKSLEGILCNAF 534
            +  DITE K     +   + 
Sbjct: 456 TLVRDITEDKVLEAELRIAST 476


>gi|299533004|ref|ZP_07046391.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
 gi|298719228|gb|EFI60198.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
          Length = 666

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 134/588 (22%), Positives = 253/588 (43%), Gaps = 16/588 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++  V      +Q I    ER                           +A ++
Sbjct: 90  VLKGVVALMTDVSHHHLATQQIRDSEERMR-KFAAITTEAIVLHRDGIITDGNDALARLV 148

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G + G + G     L Y+    R      L +    R  RL+    +   + Q   + I 
Sbjct: 149 GYSLGELRGTP--VLDYVAPEAR---LRALQNMRSEREDRLESV--IMHKNGQLIPVEIE 201

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              M          I +  D+T   ++ + +      D LT +PNR      L   +  +
Sbjct: 202 ACTMPGEKDR--HRIVLLRDLTASLQTRQHMDYLTQHDLLTHLPNRARLNHLLADAIARA 259

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A  +  R  V+ +D+D++K +ND L    GD +L  L +R+   +   DI+AR   + F 
Sbjct: 260 A-GEQSRLAVLSLDLDQFKAVNDSLSHQAGDLLLCELAKRLRSTVGAQDIVARTGSDDFV 318

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L      L+       +R +   P  +   ++ ++ S+G A +       + +L NAE
Sbjct: 319 VVLPDNPGLLETEALLTRLRATAEAPYLIEGTQLVISVSVGIAMYPKDGKCPASLLSNAE 378

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM  AK RG +  + +  +       M+  ++ L  AVE  E  L Y P   +   E+ 
Sbjct: 379 AAMQMAKSRGRSFSQFYTPALESRATRMLMQEQMLRNAVERGEFELHYQPQTLMQTGELS 438

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G +S  EF+  AE   +I A++ ++L +  R   +W+ Q   P I +
Sbjct: 439 GFEALVRWKHPHRGLVSPDEFIGFAENRGLIAAVDRWVLYQACRQARAWQQQ-GFPAIPV 497

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++++    ++ + +   ++ T      + +  +E+ +M +  + +  L  L+ +G+
Sbjct: 498 AVNLSAQEFRQRDVVKEVAQALADTGLDACYLHIEVTETTLMLSGNQMQQTLHALKALGV 557

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L+YL   P D +K + S +T         AI+ +I+ M +++   I+
Sbjct: 558 GLAIDDFGTGYSSLAYLRKHPIDRLKIDRSFVTDLPHNPDAAAIVNAIVQMGRSLHLEIL 617

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+ +     ++ L  MGC  +Q   V++PL        + +   L++ 
Sbjct: 618 AEGVESTEQLQLLREMGCAMMQGFLVSAPLSAEQASAWMSQHCQLLQR 665


>gi|228969547|ref|ZP_04130353.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228790163|gb|EEM37939.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 785

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/760 (21%), Positives = 303/760 (39%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLILLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 93

Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318
           +L+ YL    +          +        +            +   I        L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +   
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ +    +      P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I   + +++
Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + +   I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIVFLS 780


>gi|254000512|ref|YP_003052575.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253987191|gb|ACT52048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 949

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 142/573 (24%), Positives = 260/573 (45%), Gaps = 15/573 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            + V         I          +  + D +  +D    R+         LG+   ++ 
Sbjct: 377 ARDVTEAKLNELEIVHREIELRTLIDNTPDAITRFDRDARRIFVNNRKLEKLGMERDAIL 436

Query: 447 GPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   +     +          + ILD     + G ++        + +     IRI P  
Sbjct: 437 GKKPSE----YPGGTVFSQYEQKILDVVATGQPGFMEMT--GTTPEGETWHSHIRIVPEL 490

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +   + +  DITE     E +   A+ D+LT +PNR  F DR++ +L  +     
Sbjct: 491 DEQGQVQHILAVERDITELVAYRERVYYLAYYDSLTNLPNRTLFNDRISQVLMEAQWSKQ 550

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  VMV+D+D +K IND LG  VGD++L +   R+   ++  D +AR+ G+ F I+L  
Sbjct: 551 -KFGVMVLDLDHFKSINDSLGHLVGDELLCATADRLQMAIRTYDTVARMGGDEFAILLPD 609

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +A  A  + + IA P ++  +E+ ++ S+G A++         + K A+ AMYH
Sbjct: 610 IRKPDDLATIANKIVQVIAQPFHIQGKELFISTSVGIATYPLDGEDQEALYKCADAAMYH 669

Query: 684 AKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G ++ + +     S  S+ + I   L  A+ N+E  L + P + L+  +++G EAL
Sbjct: 670 AKSMGRSNYQFYSHDLGSKASEYIAIGTSLRQALRNNEFVLHFQPQMDLLTGKLLGAEAL 729

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +   +F+ +AEE  +I  I  ++LE     I+          + + IN++
Sbjct: 730 LRWHHPLHGLLPPDDFIGVAEESGLIVEIGEWVLENAFNAIVELNR-LRDDKLTVAINLS 788

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++  L N+L   +  L+ KT   P+ +KL   ES+++        +L   + +GI++ +D
Sbjct: 789 ARQFLYNDLLAAVSRLLEKTGCLPAWVKLEIRESLLLEENPDVMAVLNAFKAMGITIAID 848

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DF T  S LSYLG  P   VK +   M      + R  ++ +II +A+ +   ++A+ + 
Sbjct: 849 DFCTGYSALSYLGQFPVRQVKIDRLFMQDVVQQQDRAELVNAIIRIAQALHLELVAEGVE 908

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               +  L   GC   Q   +  P+    + +L
Sbjct: 909 SASQLAFLREKGCTMAQGFFLGKPMLLEELKQL 941



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 53/147 (36%), Gaps = 7/147 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +++ +         + +   +    V  + DI   +D    R+  +     + G+  
Sbjct: 119 NLALVRDISTRKNLQDQLEASEAKFRDLVEHAPDIFIRYDRECRRIFISQAYEEVYGIPL 178

Query: 443 GSMHG--PIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               G  P   W   ++   + +     +             E +  A D Q+    ++I
Sbjct: 179 TQALGKKPTEVWGKAWMTPAEYERQLQEIMRSRKPG----NIELQWVADDGQYVCKSLQI 234

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSL 526
            P  ++NGD++  + I  DI++++ + 
Sbjct: 235 APEFDANGDVVSVLSITRDISQRRAAE 261



 Score = 46.1 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++ + +         +    E Q   +     +VW  D     +      A     A  
Sbjct: 248 LSITRDISQRRAAENALRLRDEYQRALIDNFPFMVWLKDRQSHLLAANTAYAE---WAQA 304

Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +    +     + +   +        D  V           +V+    +  WM I   P+
Sbjct: 305 ASTRDVDGKTDFDLFPEEIAKAHIASDQVVLESGKPWHAVDQVKDQHGRQRWMEIYKSPV 364

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
              N ++   +G A D+TE K +   I+  
Sbjct: 365 R-VNDELKGIVGYARDVTEAKLNELEIVHR 393



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 8/125 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465
            S A+    + ++  D          +    LG +   +          I    D+  +R
Sbjct: 20  LSFALNKVTESIFLIDASSRIRYVNQECCRTLGYSQQDLLAMRVAD---IDPTVDQTVWR 76

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               +        L +E R      +   + I         G     + +  DI+ +K  
Sbjct: 77  DHWQALTAEI--SLTFESRHLTRQGKLLPVEINAN-YFEYAGTAYN-LALVRDISTRKNL 132

Query: 526 LEGIL 530
            + + 
Sbjct: 133 QDQLE 137


>gi|332528397|ref|ZP_08404391.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
 gi|332042160|gb|EGI78492.1| sensory box/GGDEF family protein [Hylemonella gracilis ATCC 19624]
          Length = 805

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 223/440 (50%), Gaps = 6/440 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +KK+   +   A  D LTG+PNR    DR       +   + ++  ++ +D+D +K IND
Sbjct: 364 RKKAERQMEYLAHHDTLTGLPNRVLAQDRFAQAKSRADR-ETVKLALLFLDLDGFKTIND 422

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L  +  R+G  ++  D ++RL G+ F ++L   +++   A   + + + +
Sbjct: 423 SLGHGVGDALLQQIAVRLGGCVRDSDTISRLGGDEFLVLLSDISSADDTAPVLLKVLERL 482

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             P+ +  RE++ + SIG + +         +LK A++AMY AK  G N    F  +++ 
Sbjct: 483 HEPVRVENRELSTSVSIGVSIYPDDGRDFDTLLKKADMAMYRAKDAGRNTYRYFDEQMNV 542

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +++ ++ DL  A+E SE  L Y P I L    +VG EAL++W+HP+ G +  + F+ 
Sbjct: 543 EAVEQLALRSDLRHALERSEFVLHYQPQIELATGRVVGAEALVRWNHPERGLVLPARFIP 602

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AEE  +I  +  +++    R   +WR     P + + +N+++      ++ + + A++ 
Sbjct: 603 AAEESGLIIPLGAWVMHEACRQAAAWRRAGL-PSLVMAVNLSAVQFRRGDVEQTVLAVLE 661

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L  +ES+++   E     + RL++ G+  ++DDFGT  S LSYL     D
Sbjct: 662 AAGLPSEWLELELTESILIHESEGVLATVRRLKQQGVRFSIDDFGTGYSSLSYLKRFEID 721

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +          AI+R+II MA+++  + IA+ +  +  +  L   GCD  Q 
Sbjct: 722 KLKIDRSFVRDLAVDADDAAIVRAIIQMARSLGLSTIAEGVETDEMLSRLRAFGCDEAQG 781

Query: 938 SHVASPLGFNSILKLLKERF 957
            + A P+        L+E+ 
Sbjct: 782 YYFARPMPVQEFECYLREQN 801


>gi|298290964|ref|YP_003692903.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Starkeya novella DSM 506]
 gi|296927475|gb|ADH88284.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Starkeya novella DSM 506]
          Length = 713

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 131/562 (23%), Positives = 247/562 (43%), Gaps = 11/562 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E  +  +      +   D+    V      A  +G     + G     +  +   
Sbjct: 148 LRESREALAQVIDTVPAFISAADLEGRCVLVNAQQAASIGRQPADLVGQP---VEALLGE 204

Query: 460 DRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +R      LD  V      L   E  V     +    +    P+ +  G I   +  + D
Sbjct: 205 ERALISRRLDQLVLRTSHALAPREEEVTTPAGEHRIYLTSKAPLHDGAGRITSILTTSID 264

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+++++ + +   A  D+LTG+PNR    D L   L       +    +  ID+D++K 
Sbjct: 265 ITQRREAEKRLEYLASHDSLTGLPNRLMLRDHLRRELAR-GRRGDQNFALHFIDLDRFKA 323

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD +L ++   +  L+     +ARL G+ F ++    +        A A+ 
Sbjct: 324 INDAHGHHRGDRLLQNVADSLTRLVGPSHTVARLGGDEFAVLQPDIDGPEDAERLARAIL 383

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
             +    +       + ASIG            E+L+N++ AMY AK  GGN V  F   
Sbjct: 384 HMLTDE-DAGPSAPRIGASIGITVAPLDGADPDELLRNSDQAMYLAKSLGGNTVRFFAAD 442

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++   + R  ++ +L  A++  +  L Y P+I L    ++G EAL++W HP+ G ++   
Sbjct: 443 MAPRATQRAQMEGELRDALKRRDFVLYYQPLIDLRRNAVIGAEALLRWSHPQRGVLAPGA 502

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  IN ++L    R    WR      P+ I +N++       ++ E ++ 
Sbjct: 503 FLGLAEESGLIVPINEWVLREACRQGAQWRGAGLG-PLRIAVNLSPIQFRRQQVGELVRD 561

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  + + P  + L  +E +++   E     +  LR +G+SL++DDFGT  S L+Y+   
Sbjct: 562 VLEDSGFPPDLLDLELTEGILIDYDETVTEQMHLLRSLGVSLSVDDFGTGYSSLNYIRNF 621

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +       + +AI+R+II +   +   ++A+ +     ++ L   GCD 
Sbjct: 622 PLHRLKIDRSFVKDLANDPRALAIVRTIIDLGHILNLQVVAEGVEEGAQLETLRAEGCDE 681

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q  + + P+  +   + L +R
Sbjct: 682 VQGYYFSPPVPADVFARWLAQR 703


>gi|327482606|gb|AEA85916.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri DSM
           4166]
          Length = 751

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/594 (23%), Positives = 256/594 (43%), Gaps = 32/594 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           ++ I F  +   + T   +Q   +     R + A+ GS D +W+W++  D++  +     
Sbjct: 146 LLKIVFFDMILAIDTYSAAQRHALEDSEARLTRALRGSEDGIWEWNVEHDQLHLSERWTA 205

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +LG+         R+W   +H +D    R  +   +  R   L +E+RVR     + W++
Sbjct: 206 MLGM-PAQPSYTSRSWFERVHPDDLPGLREAIADHLNGRTPSLAHEYRVRIEGGDYLWVL 264

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +R        G  LR  G   DI+ +K + E +   A  D LTG+ NR    + L  +  
Sbjct: 265 VRGVAERCEQG-TLRMAGSQTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEV-- 321

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      ++ +D+D++K IND LG   GD VLV + +R+   L+  D LAR  G+ 
Sbjct: 322 -QQRPHGRAAALLFVDLDRFKLINDSLGHGAGDQVLVEVAQRLLRCLRPGDHLARFGGDE 380

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  +L            A  M  ++  P+ L ER ++V+ASIG A         + + + 
Sbjct: 381 FVALLGDLACEADAERVAQRMLVALRQPLQLGERTLSVSASIGIAPLQRDGQALNAL-QA 439

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LA+Y AK  G +    F     S  + ++ ++  L  A+   E  L Y PI R+    
Sbjct: 440 ADLALYRAKSAGKDQFALFCDGLHSKAARQLELESALAQALTRREFALHYQPICRVEQGR 499

Query: 735 --IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +VG+EAL++W       ++  EF+ + EE   I  +  ++L      +  W+      
Sbjct: 500 PYVVGVEALLRWRFND-KPVAPHEFIPVLEESREIVRVGEWVLREACCQVRRWQQA-GQT 557

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES--------VVMGNPERS 844
            ++  +N++ + L      + +  ++ +T   P         S        ++M + E +
Sbjct: 558 QLYCAVNLSIRQLQQPGFTDLLARVLRETGLRPD--------SLLLEITETLLMQDSEAT 609

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
              L  +  +G+ L LDDFGT    L YL   P   +K + S +         +AI R++
Sbjct: 610 MSSLHEISALGVRLALDDFGTGYCSLGYLKRYPLHVLKVDRSFIAAAPDDPDSVAISRAV 669

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I + +++   ++A+ +     +  L   GC  +Q    + P     + ++    
Sbjct: 670 IGLGQSLGLAVVAEGVERPEQVAFLGAEGCQLVQGYWFSPPRSAAELQRMFDRE 723


>gi|256391676|ref|YP_003113240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
 gi|256357902|gb|ACU71399.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Catenulispora acidiphila DSM 44928]
          Length = 864

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/604 (22%), Positives = 256/604 (42%), Gaps = 20/604 (3%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
                             L   T  +             +   R       +   +   D
Sbjct: 265 PETRSALRAGLASAFAEGLRERTRAEQSSIHEAVLTAYRAGEARFRTVFRNAALGIVITD 324

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +   P +A +LG+ + +  G  R     I   +   +    ++ +   +   + +
Sbjct: 325 KHGQVLEVNPALAEMLGVDAYAARG--RTIRNLIDPTEPGEYWRGYNALLAGEQTEAEAD 382

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R+R  D    W  +R   + + +GD+   I +  D+TE++++ + +   A  D LTG+P
Sbjct: 383 TRIRRLDGGVVWTHVRTTAVRDDSGDVALVIALHEDVTERRRATDQLRHQATHDALTGLP 442

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR   LD +  +L  +      R  +  +D+D +K +ND LG   GD++L  +  R+   
Sbjct: 443 NRVRLLDAVEELLRSAG--PEDRLGLCFLDLDGFKGVNDTLGHQAGDELLTEIAHRLSAA 500

Query: 603 LKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                 ++AR+ G+ F I+      +  +      +  ++  P+ L    +TVTAS G  
Sbjct: 501 TDPRRHVVARMGGDEFVILFRRTQGAQSVFPVIEKVLDAVRQPVLLDGHSVTVTASAGLV 560

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
              ++  +++E+L+ A++ +Y AK  G      F       +     + + L  A+++ E
Sbjct: 561 ERPAAAASATELLRAADITLYWAKSAGKADFALFDEDRNAREVHRYALAQALPAALDSGE 620

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           ++L Y PI+ L       +EAL++W HP+ G +   EF+ +AEE   I  +  ++L+R  
Sbjct: 621 MFLDYQPIVDLAGGRPPMVEALVRWRHPERGLLKPEEFIPVAEETGAIVELGRWVLDRAV 680

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           RD  +W D        + +N+A + + D  L   +   +  +   P R+ L  +E+ +M 
Sbjct: 681 RDAAAWPDGPA-----VAVNVAVRQVHDYGLVREVATALEVSGLPPRRLCLEITETALMD 735

Query: 840 NPERSRL---LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
             E        L  L  +GI + +DDFGT  S L+ L  +P  ++K + S +        
Sbjct: 736 TEEDGLPGPGTLRTLADMGIGIAVDDFGTGYSNLARLRDLPATSLKIDASFVADLGHPDA 795

Query: 897 -----AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                +++ S++ +A     T+ A+ I      + LT +G DY Q  H + P+    I  
Sbjct: 796 GDFAESVIISLVALAHAAGMTVTAEGIETADQARRLTTLGVDYGQGFHYSRPVSAERIEA 855

Query: 952 LLKE 955
           ++ E
Sbjct: 856 VMAE 859


>gi|218898849|ref|YP_002447260.1| sensory box/ggdef family [Bacillus cereus G9842]
 gi|218544966|gb|ACK97360.1| sensory box/ggdef family [Bacillus cereus G9842]
          Length = 914

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 150/737 (20%), Positives = 310/737 (42%), Gaps = 50/737 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I  L  ++   
Sbjct: 191 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPIL-LIAIAGSI 249

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P    S     + + ++     +++                       I +   + ++  
Sbjct: 250 PEDHNSHKNYFIVNPIIGKKALVVF-----------------PYLAVAILIGFTLKEQTS 292

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402
           +  +        + ++I      +Q                           + S+ +  
Sbjct: 293 SSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQ 352

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ++         D ++  D+    +      + +LG  +  + G        I   D+ 
Sbjct: 353 KQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKH 410

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                L+         LQ   +    D   +++ + I P+   +G I     +  DIT  
Sbjct: 411 KLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITAL 467

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK  E I   AF D +T I NR  F  +L  ++  +    +    ++ +D+D++K IND 
Sbjct: 468 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKIAGS-EFALLYLDLDRFKAINDT 526

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   +      + + + 
Sbjct: 527 LGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMK 586

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700
               + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK      +    ++  
Sbjct: 587 KSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIAKK 646

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ I
Sbjct: 647 IERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPI 706

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I +I  + LE+  + +  W        + I +N+++K+    +    + + ++ 
Sbjct: 707 AEETLQIISIGKWTLEQACKQMKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTLTN 765

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT
Sbjct: 766 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 825

Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  
Sbjct: 826 LKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGY 885

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+  ++  +LL+ 
Sbjct: 886 YYSKPIHIDAFTELLEN 902


>gi|167033959|ref|YP_001669190.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166860447|gb|ABY98854.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 847

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 133/671 (19%), Positives = 279/671 (41%), Gaps = 25/671 (3%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
               +  V +    + L          +     +   RA L +    L   W +      
Sbjct: 191 AVMVFIRVLSPKVLLVLGESAGLSGVAVSDSTDQRKGRAALALEGIGLALTWDLPQPGTQ 250

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL------ATGYFSQGIFSDGERQSLAVL 412
             +     +  A++   + I +   + +           A       + S  ER      
Sbjct: 251 LIKTVVTPLAIAVLLIALSIALFARYAMRASTRIDRSHRALMISRAALQSSEERFKAVAE 310

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D +W+ D++      +   + + G             L      D  + +T L S  
Sbjct: 311 AASDWIWETDVLLRLTYLSDRFSELTGHPVEVWRQRPITELLSC---DTSHLQTWLHSLA 367

Query: 473 G-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                G L+ ++  +    Q     I  R + + +     + G  +DIT++  +   I  
Sbjct: 368 ATGSSGTLRCQY--QDHLGQQRTCRIASRAIVDQS-VCTGFRGTCSDITDEVAAHAQIQH 424

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D LTG+PNR      L   +        L+  ++++D+D +K IND LG   GD V
Sbjct: 425 LSSHDALTGLPNRNKLFRFLEQSMT---GTGPLQVALLILDLDNFKPINDSLGHPAGDAV 481

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +  R+G+  +  D++ARL G+ F +++    +   +  F I + ++I  P+ +    
Sbjct: 482 LLEVAGRLGQATRDSDLVARLGGDEFIVVVTRPGDHNNMERFCIRLIEAIKRPMRVEGHS 541

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
           + V  S+G         T S++++ A++A+Y+AK  G N    F         D+ +++ 
Sbjct: 542 VQVGVSLGVVMSAEYPGTPSDLIRYADVALYNAKQAGKNTWRFFSAQLNAALMDKRVLES 601

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L   +   EL L + P  ++    +   EAL++W HP+ G +    F+ +AEE  +I  
Sbjct: 602 ELRDGIPRGELVLHFQPRFKVDGVSLASAEALVRWQHPRLGLLRPDRFIPLAEESDLIVL 661

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L+        W        I + +N++      +++   +   +  T     R++
Sbjct: 662 LGNWVLQEACNKARGWPQA-----IMVSVNMSPAQFSRSDVVRDVGDALRTTCLPAHRLE 716

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+V++ + E +   +  L+++G+ L +DDFGT  S L YL   PFD++K +   + 
Sbjct: 717 LEITENVMLNDVEGALHTMHALKELGVRLNMDDFGTGYSSLGYLRTYPFDSIKIDKRFVQ 776

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               +    +++++II +   +  T+ A+ +     +  L+   C  +Q   ++ PL   
Sbjct: 777 HLGKSGSDRSVVQAIINLGNAMGMTVTAEGVETAEQLALLSDDQCHEVQGFLLSKPLENE 836

Query: 948 SILKLLKERFP 958
           +++ +++E  P
Sbjct: 837 ALIGMMREPIP 847


>gi|332994026|gb|AEF04081.1| signal transduction protein [Alteromonas sp. SN2]
          Length = 1045

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 127/559 (22%), Positives = 250/559 (44%), Gaps = 14/559 (2%)

Query: 404  GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             E+  L       + + ++  D   + +        I G     + G   N         
Sbjct: 473  EEKLKLSASVFSHAREGIFITDSNANIIDVNKTFVDITGYERNEVLGKKPNMFKS-GKQS 531

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             + +  +  S +   +G    E   +  +++ +  ++ +  +++  G++  YI I +DI+
Sbjct: 532  PEFYHHLWASILN--KGYWAGEIWNKRKNHEVYAQLLTVSAVNDDEGNVKNYIAIFSDIS 589

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E K+    +   A  D LT +PNR    +RL   L    +D      V ++D+D +K+IN
Sbjct: 590  EAKEQQYKLEHMAHYDVLTNLPNRSLLAERLDRALSQCKSDKGF-VAVALLDLDGFKEIN 648

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G +VGD++LV L  R+   L+  D ++R  G+ F  +L +             M + 
Sbjct: 649  DNFGHSVGDELLVILAHRLKGTLRETDTISRFGGDEFVTVLANLKQPQDFVAIIKNMLRV 708

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             + P+ + E ++ V+ASIG   + +    + +++++A+ AMY AK +G N    F + S 
Sbjct: 709  ASEPVKIGESQLKVSASIGVTLYPADNTDADQLIRHADQAMYLAKQKGKNCYHLFDIESE 768

Query: 701  RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             + +   +  + +  A+ N E  L Y P + +   EI+G EALI+W HP  G +S + F+
Sbjct: 769  DAIKARHEILQSITTALHNREFVLYYQPKVNMRTGEIIGAEALIRWKHPVEGILSPAAFL 828

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
               E   +   I  +++E   +    W        I I +NI++  +        +  L+
Sbjct: 829  PFIENHQLSIDIGEWVIEESLQQFSRWNKLG--VHIPISVNISALQIQQRNFPIRLARLL 886

Query: 819  SKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            SK     P   +L   E+  +G+ ++   ++    K+G++  +DDFGT  S L+YL  +P
Sbjct: 887  SKVPNVPPEAFQLEVLETSKLGDIKKVAEIMDDCVKLGVTFAIDDFGTGYSSLTYLRRLP 946

Query: 878  FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
               +K + + +       +   I+  +I +AK+   ++IA+ +        L  +GC+  
Sbjct: 947  AKVIKVDQTFVRDMLIDPEDRTIVVGVIALAKSFNRSVIAEGVETIAHGTSLLNLGCELA 1006

Query: 936  QDSHVASPLGFNSILKLLK 954
            Q   +A P+    +   + 
Sbjct: 1007 QGFGIARPMPATDMPDWIA 1025



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 56/221 (25%), Gaps = 11/221 (4%)

Query: 314 TLASIVLYYTYFIIYHGMKGY-ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
            L +IV+      ++   +   +    L+ +   +          +   ++   +Q    
Sbjct: 270 ILTAIVILLVGVSVWGVRRNVLKPIRTLLQSTKALAEGKEVSDAPMHGSVELVKLQQRFT 329

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
                       T ++           +       +  +  +      WD          
Sbjct: 330 SMAK--------TRLEAEKRLIDSQASLLESKNILASHIENTPLGCIAWDPQLICTDWNK 381

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
               I G       G   + L  I    +          +  +  + +   +        
Sbjct: 382 SAEFIFGYKKEEAIGKHASEL-IIPPELQTEIDNGFAQLLKKKAPK-RKINKNVTKLGHP 439

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                   P+ +  G+++    +  DIT+ K   E +  +A
Sbjct: 440 IICEWYSTPIFDLAGNVISVTSLVQDITKNKHLEEKLKLSA 480


>gi|254561939|ref|YP_003069034.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254269217|emb|CAX25183.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           DM4]
          Length = 954

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 248/572 (43%), Gaps = 27/572 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454
              +     +   A+      +  +D     +        + G+ + ++     IR+   
Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRPGMSIRDVAR 450

Query: 455 YIHIN-DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  + D      +L     +  R         +R            I  +         
Sbjct: 451 LVEASSDNGRAIDLLVEQEALLQRGLSASLCCPIRT---------DCIVALKQQPTAEGG 501

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I    D+T++ ++   I+  A +D LTG+ NR  F +RL                 + +
Sbjct: 502 WIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLCL 561

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----S 627
           D+D++K++ND LG  +GD +L S+  R+   L+  D++ARL G+ F I+           
Sbjct: 562 DLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHAR 621

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +  A  +  +   P  L    +TV  SIG +       +  ++LK+A+LA+Y AK  
Sbjct: 622 RDASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKAT 681

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F          R  ++ DL  AV N E  LV+ PI++L  + I   EAL++W 
Sbjct: 682 GRGCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWR 741

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S ++F+ +AEE   I  I  ++L +   +  +W        I + +N+++   
Sbjct: 742 HPERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQF 796

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +  +   +   ++ +     R++L  +ESV++ +   +   L  L+++G+ + +DDFGT
Sbjct: 797 KNAAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGT 856

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFD +K + S +           I+RS++ + +++  T  A+ I  E  
Sbjct: 857 GFSSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQ 916

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +++L   GCD  Q    + P+   +I +L+  
Sbjct: 917 LEQLRLEGCDEGQGYLFSRPVPSATIRELVTA 948


>gi|95929220|ref|ZP_01311964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134718|gb|EAT16373.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 1018

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/566 (23%), Positives = 253/566 (44%), Gaps = 19/566 (3%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              +   R  L       + + +   D     +       +I G + G + G     L  
Sbjct: 446 EALAAERRLKLITKVFENTAEAIIVTDRCNQIIEVNQAFISISGYSRGEVLGQNPRLLQS 505

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H +D   F  +    +    G  + E   R  + + +   + I  + + +G I  +  I
Sbjct: 506 DH-HDGAFFAQMWKQLID--TGHWEGEVWNRRKNGEEYVSWVTIDTIRDHDGSIKNFFSI 562

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           ++DI++ K++   +   A+ D LTG+PNR SF  +L   L     D+     VMV+D++ 
Sbjct: 563 SSDISQIKEAERQLHQLAYFDTLTGLPNRVSFAQKLEEHLTTC--DEACNLAVMVLDLNA 620

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IN+ LG  + D +L   + R+         +AR+ G+ F  IL       ++     
Sbjct: 621 FKLINESLGPVLADKLLQMFSERLTLCSYDDSFVARIGGDEFAFILR----KQRVRSLLD 676

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  P  +  + +++T S+G A       T SE+LKNA +A+Y  K    N    +
Sbjct: 677 ELFECVEAPFVIGAQRVSLTTSVGIAVAPDDGETVSELLKNANIALYSIKDIRRNSFSYY 736

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +S    +R+ + E L  AV+N E  L Y P I L D  +VG EAL++W H + G + 
Sbjct: 737 EQVMSDRVIERMSLAEMLREAVDNGEFELYYQPKINLKDGMVVGAEALLRW-HSRDGMVP 795

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ IAE+  +I  I  ++L +       WR +       + +N++      + L   
Sbjct: 796 PDRFIPIAEQTGLILPIGEWVLLQACEQAHIWRQEYPE--FHMGVNLSPAQFDLDYLPRL 853

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++ +       ++L  +E +++ + + +  +L  LR +G+ +++DDFGT  S LSYL
Sbjct: 854 VADILKEAQLPAEALELEITEGMIIEDIDNTVQILRSLRDLGVEISIDDFGTGYSSLSYL 913

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S M     +     ++ SI+ +A+++   + A+ +  E  +  L    
Sbjct: 914 TRLPLDILKIDRSFMFEVPDSRDSTNVVLSILALARSLNLKVTAEGVETEDHVTLLHDHR 973

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C YIQ    + PL      + ++ R 
Sbjct: 974 CTYIQGYFCSRPLPVAEFEEFMRHRQ 999



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 1/151 (0%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V  IG T+ + +       Q  F   +R S  +  SG +V   D     +         
Sbjct: 304 EVAAIGNTINEMLERLRVGDQIRFQQEKRFSDMIEHSGLVVIGIDHTSSIILFNQAAEKA 363

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G A   +      +  +      ++    +   + +      +   ++  D +    + 
Sbjct: 364 TGYAREDVL-QENFFGLFTSPATAEHLGGYIAKAMAHGEFTGDFHAPLKMRDGRVRQFLW 422

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 + NG I  +IG   D+TE   +   
Sbjct: 423 DAIFEYDENGQIDNFIGFGRDVTEALAAERR 453


>gi|228902253|ref|ZP_04066413.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228857368|gb|EEN01868.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 891

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 150/737 (20%), Positives = 310/737 (42%), Gaps = 50/737 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I  L  ++   
Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPIL-LIAIAGSI 226

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P    S     + + ++     +++                       I +   + ++  
Sbjct: 227 PEDHNSHKNYFIVNPIIGKKALVVF-----------------PYLAVAILIGFTLKEQTS 269

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402
           +  +        + ++I      +Q                           + S+ +  
Sbjct: 270 SSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQ 329

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ++         D ++  D+    +      + +LG  +  + G        I   D+ 
Sbjct: 330 KQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKH 387

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                L+         LQ   +    D   +++ + I P+   +G I     +  DIT  
Sbjct: 388 KLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITAL 444

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK  E I   AF D +T I NR  F  +L  ++  +    +    ++ +D+D++K IND 
Sbjct: 445 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKIAGS-EFALLYLDLDRFKAINDT 503

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   +      + + + 
Sbjct: 504 LGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMK 563

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700
               + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK      +    ++  
Sbjct: 564 KSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIAKK 623

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ I
Sbjct: 624 IERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPI 683

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I +I  + LE+  + +  W        + I +N+++K+    +    + + ++ 
Sbjct: 684 AEETLQIISIGKWTLEQACKQMKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTLTN 742

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT
Sbjct: 743 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 802

Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  
Sbjct: 803 LKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGY 862

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+  ++  +LL+ 
Sbjct: 863 YYSKPIHIDAFTELLEN 879


>gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 127/583 (21%), Positives = 247/583 (42%), Gaps = 12/583 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++  L          SD    +  +  + + +         +        I G     +
Sbjct: 257 TLRRALRYAIIRHRRDSDMRLAAAVIKHTREGITISRSDGTIIEVNDAFCRITGYRREDV 316

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L      DR+ +  +  +      G    E   +  + + +  ++ I  + + 
Sbjct: 317 IGQNPRLLQS-GRQDREFYVEMWRAL--GEEGFWSGEIWNKNKEGRIYPQLLTISAVPDG 373

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    Y+ I +DI+E K+  + +   A  D LTG+PNR    DRL   +  +      R
Sbjct: 374 TGKPGHYVAIFSDISELKEQQQRLERIAHYDTLTGLPNRDLLADRLNHAMIQTIRRQ-TR 432

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  +D+D +K IND  G  VGD +L +L  R+ + L+  D L RL G+ F  I     
Sbjct: 433 LAVAYLDLDGFKAINDTHGHDVGDFLLRTLAGRMQQTLRESDTLGRLGGDEFVAIFQDLP 492

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684
           ++         +  + AMP++  E  + V+AS+G   +  S+   + ++L+ A+ AMY A
Sbjct: 493 DNETCLPLLQRLLNAAAMPVSYQETILQVSASLGVTFFPQSEKIDADQLLRQADQAMYQA 552

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F             +   +  A+ + E  L Y P + +    +VGLEALI
Sbjct: 553 KQTGKNRYHLFDAVQEVAMRGHHELLGRIKRALNDQEFILYYQPKVNMRSGVVVGLEALI 612

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G ++ + F+   E+  +  A+  ++L      + +WR       + + +NI++
Sbjct: 613 RWQHPELGLLAPAYFLPAIEDHPLAVAVGDWVLATALAQLAAWRRAG--ISLPLSVNISA 670

Query: 803 KDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + L  ++    ++  +++       +++L   ES  + + ++   ++ + R +G+   LD
Sbjct: 671 RQLQQDDFVAKLEQQMARWPEVPADQLELEVVESSALADIDQVSKIITQCRAMGVGFALD 730

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P  T+K + S +         +AIL  ++ +A+      +A+ + 
Sbjct: 731 DFGTGYSSLTYLKRLPARTLKIDRSFVADMLDDPDDLAILEGVLGLARAFNRQTVAEGVE 790

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
                  L ++GC+  Q    A P+    +   +       + 
Sbjct: 791 SAAHADSLLKLGCEVAQGYWFAKPMPMAEVPAWVAAYETRSRR 833


>gi|302879322|ref|YP_003847886.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302582111|gb|ADL56122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 995

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/568 (27%), Positives = 268/568 (47%), Gaps = 16/568 (2%)

Query: 399 GIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    E   +A     + + +   D   + +          G  +  + G    +L   
Sbjct: 430 ALRDAQEYLRIAATTFETHEAILITDARANIIRVNQAFQDTTGYCAEEVLGKNPRFLSS- 488

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D   +  +    V    G    E   R  D   +   + I  + N  G+   Y+ I 
Sbjct: 489 GCQDSAFYVEMWQQLVAN--GTWSGELWDRHKDGHIYPKNLTITAVKNILGETTEYVSIF 546

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DI+E+K++ E I   AF D LT +PNR+  LDRL   L +SA   +    V+ +D+D++
Sbjct: 547 SDISERKRAEEEIRNLAFYDVLTQLPNRRLLLDRLHLALSVSARSGSY-GAVLFLDMDRF 605

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIA 631
           K++ND LG   GD +L+ +  RI   ++  D +AR  G+ F I+L       +  S K A
Sbjct: 606 KRLNDTLGHGCGDLLLIEVAERIRFCVREVDTVARFGGDEFVILLEEVGKNADEASKKAA 665

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +R ++++P  + E E   + SIG   +  +     ++LK+A++AMY AK  G N 
Sbjct: 666 LIAEKIRAALSVPYKIKEHEYHSSPSIGVNLYCGNGNAVEDLLKHADMAMYEAKESGRNA 725

Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F   +    S+R  ++ DL  AV + +L L Y   +   ++  +G EAL++W HP  
Sbjct: 726 VRFFDPVMQHSVSERASLEADLHRAVPDQQLQLYYQIQVD-SNQRSLGAEALLRWIHPTR 784

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S ++F+ +AEE  +I  +  ++L+   R +  W +   M  + + +N++ K     +
Sbjct: 785 GMVSPAQFIPLAEESILILELGDWVLDAACRQLAIWSEADLMRHLTLAVNVSGKQFKQRD 844

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +  ++       SR+KL  +ESVV+ +       +  L+ + + L++DDFGT  S 
Sbjct: 845 FVEKVARILQVHQVDASRLKLELTESVVLNDVTDVISKMQALKALRVRLSMDDFGTGYSS 904

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL  +P D +K + S +      +    ++++II MAKN    +IA+ +  E     L
Sbjct: 905 LSYLKQLPLDQIKIDQSFVRDMTFDQNDAVMVQTIIDMAKNFGLNVIAEGVETEAQKLLL 964

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++GC   Q    + PL       LLKE
Sbjct: 965 EQLGCLNYQGYLFSKPLPIAQFEALLKE 992


>gi|240139525|ref|YP_002964000.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           AM1]
 gi|240009497|gb|ACS40723.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein [Methylobacterium extorquens
           AM1]
          Length = 954

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 248/572 (43%), Gaps = 27/572 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454
              +     +   A+      +  +D     +        + G+ + ++     IR+   
Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRPGMSIRDVAR 450

Query: 455 YIHIN-DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  + D      +L     +  R         +R            I  +         
Sbjct: 451 LVEASSDNGRAIDLLVEQEALLQRGLSASLCCPIRT---------DCIVALKQQPTAEGG 501

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I    D+T++ ++   I+  A +D LTG+ NR  F +RL                 + +
Sbjct: 502 WIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAAHLDEGAGAGFATLCL 561

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----S 627
           D+D++K++ND LG  +GD +L S+  R+   L+  D++ARL G+ F I+           
Sbjct: 562 DLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHAR 621

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +  A  +  +   P  L    +TV  SIG +       +  ++LK+A+LA+Y AK  
Sbjct: 622 RDASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKAT 681

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F          R  ++ DL  AV N E  LV+ PI++L  + I   EAL++W 
Sbjct: 682 GRGCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWR 741

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S ++F+ +AEE   I  I  ++L +   +  +W        I + +N+++   
Sbjct: 742 HPERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQF 796

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +  +   +   ++ +     R++L  +ESV++ +   +   L  L+++G+ + +DDFGT
Sbjct: 797 KNAAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGT 856

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFD +K + S +           I+RS++ + +++  T  A+ I  E  
Sbjct: 857 GFSSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQ 916

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +++L   GCD  Q    + P+   +I +L+  
Sbjct: 917 LEQLRLEGCDEGQGYLFSRPVPSATIRELVTA 948


>gi|228903989|ref|ZP_04068096.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228855634|gb|EEN00187.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 785

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/760 (21%), Positives = 303/760 (39%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 93

Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318
           +L+ YL    +          +        +            +   I        L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +   
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ +    +      P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I   + +++
Sbjct: 502 IAMYSAKEKGNNAVCMYDEKLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + +   I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 741 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIVFLS 780


>gi|186472006|ref|YP_001859348.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phymatum STM815]
 gi|184194338|gb|ACC72302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia phymatum STM815]
          Length = 772

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 142/598 (23%), Positives = 257/598 (42%), Gaps = 25/598 (4%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
              L  I   +G  V Q ++        +    E   L V    + +         +   
Sbjct: 173 QALLREIGQSVGLAVHQDLMRKR-----LAQSEEHHRLVVDHLNEGIVVQSREGVVLACN 227

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           P    +L      +   I   +     +D    +         +   R  +    R+   
Sbjct: 228 PSARRMLRATGEVIGRDIYKVIRAAFWDDGSPVETAEQPTRRVLRTGRPVVGITLRLELV 287

Query: 489 DNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                W+   + P+      +    +   NDI+  + +   +   A +D+LTG+ NR   
Sbjct: 288 GGGSIWITENVVPIFKRGETEAGAVLVSFNDISAVQAARAQLQYLATRDSLTGLYNRAYL 347

Query: 548 LDRLTTILD---LSATDDNL-------RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            DR++  L     +A            R  V+ +D+D +KK+ND+ G   GD +L S+  
Sbjct: 348 ADRMSERLAPHTSAAAHGRGEPRAAARRLAVLFVDLDGFKKVNDIAGHEAGDALLCSVAA 407

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   ++  D LAR+ G+ F I      ++  +   A  +  +IA P  +   E  + AS
Sbjct: 408 RLAGCVRSEDTLARVGGDEFVIATGDYTDASFLTSLAQRVLDTIARPFAVGGNEYYLGAS 467

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG + +      +  +++NA+ AMY AK RG ++ + F     +  +    I++ L  A+
Sbjct: 468 IGISLFPDDGCDAQTLMRNADSAMYDAKQRGRHNFQFFTAELSQRLKRRFGIEQSLRRAL 527

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              EL L Y PI+      IVG EAL++W + + G +S  EF+ +AE+  MI  I  ++L
Sbjct: 528 AAGELSLAYQPIVEGATGRIVGAEALLRWRNDELGQVSPVEFIPVAEDTGMIIDIGRWVL 587

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E   R  + WR     P + I +N++ + + + EL   + A + +T   PS ++L  +E 
Sbjct: 588 ENACRQAVEWRR-TITPHLMIAVNLSPRQI-NGELIGHVAATLEQTGLEPSALELEITEG 645

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           V+M + E    LL  L  +G+ +++DDFGT  S LSYL   P  ++K + S + G     
Sbjct: 646 VLMSDSESVMPLLTTLAGMGVRISVDDFGTGYSSLSYLKRFPLHSLKVDRSFVAGLPGHR 705

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +AI  +++ MA ++  ++ A+ +        L  +GC+  Q      P+      +
Sbjct: 706 DAVAITHAVVAMAHSLGMSVTAEGVETSEQSAFLRSIGCERQQGYLFGRPVVPGDFAR 763


>gi|146341041|ref|YP_001206089.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146193847|emb|CAL77864.1| putative signaling protein containing multidomains (PAS/GGDEF/EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 903

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 152/625 (24%), Positives = 277/625 (44%), Gaps = 36/625 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I+     +   +A        +I   +   L++  +L    V + +      ++ +  + 
Sbjct: 287 IVTATTTVSAALADWHEQMRFLIGVGVTSVLLIAGML-TVVVRRLLSDHEASNRRLTLEK 345

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HI----- 458
           ER   AV      +  +D     V +      + GL++  +  P   +   I H      
Sbjct: 346 ERLDKAVNNMTQGLLLFDASERLVISNQRYIDMYGLSA-EVVKPGCTFRELIAHRKARGS 404

Query: 459 ---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              ND D    +L          ++        D    W+ I   P++        ++  
Sbjct: 405 LAGNDSDYANAVLREVSRKTSQIIE------TPDG--RWIQIVNEPIAGG-----GWLAT 451

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE++++ + I   A  D LT +PNR  F +RL   +   A     +  +  IDID+
Sbjct: 452 HEDITERRRAEQQITHLAHYDALTELPNRTLFHERLKQEMLGVAQ--GRQLALHYIDIDE 509

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG  +GD++L S+ R +   +     +ARL G+ F ++  +  +   ++    
Sbjct: 510 FKGVNDTLGHLIGDELLKSVGRSLQACVGTAGFVARLGGDEFAVVQTTIKSREDVSCLID 569

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            M  +I  P + L  ++T  ASIG A          +++KNA+LAMY AK  G      F
Sbjct: 570 DMLAAIRAPRDCLGHQLTADASIGVALIPQHGTDLDQIMKNADLAMYAAKAAGRRTWRFF 629

Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R  ++ DL  A+ + +L + Y P + L D+ IVG EAL++W HP  GN+S
Sbjct: 630 EPEMDAQVKARHQLEVDLRQAMVDDQLEVYYQPCVSLQDDRIVGCEALVRWRHPTRGNVS 689

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ IAE+  +I  +   +L     +  +W +      I + +N++        L   
Sbjct: 690 PAEFIPIAEDTGLINQLGERVLNVACAEAATWPE-----DIRLAVNVSPVQFKSGTLALK 744

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   ++ +  SP R++L  +E+V++ + + +   L  LR +G+ + LDDFGT  S LSYL
Sbjct: 745 VAKALAASGLSPRRLELEITEAVLIRD-DDALDTLYELRALGVRIALDDFGTGYSSLSYL 803

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             IPFD +K +   +     +E   AI+++++ +A+  + +  A+ +  E   + L R+G
Sbjct: 804 QRIPFDKIKIDRCFVKDITESEGSAAIVQAVVNIAEIRKMSTTAEGVETEAQRQVLQRLG 863

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C  +Q    + P     +  L    
Sbjct: 864 CSEMQGYLFSPPKPAAEVRSLFAAH 888


>gi|90417189|ref|ZP_01225116.1| PAS:GGDEF protein [marine gamma proteobacterium HTCC2207]
 gi|90330965|gb|EAS46226.1| PAS:GGDEF protein [marine gamma proteobacterium HTCC2207]
          Length = 873

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/591 (23%), Positives = 262/591 (44%), Gaps = 22/591 (3%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             + LIV+        +             +  R S     S D +   D     +    
Sbjct: 296 VEIALIVLQRDGECFFNCFVRDLTEHNKNIEELRISAITFNSQDAIIITDADLRTLRVNQ 355

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +  I G +S  + G   + L        + F   +   +    G  + E      +   
Sbjct: 356 RVVDITGYSSADLIGLRPSLLSSTVQG--EQFYGDMWRTLETE-GSWEGEVWDTRKNGDV 412

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             +++ ++ + ++   I  Y+   +DIT  K+  + I   AF   LT +PNR++ +D ++
Sbjct: 413 FPLLVTVKTIHDAKSRITHYVFSFSDITTTKRDADAIHKLAFFAPLTHLPNRRALIDTVS 472

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L+ S         ++ ID+D +K IND LG  +GD +L+   +R+   ++  D +AR+
Sbjct: 473 QALNSSQRHIK-SLALLSIDLDNFKNINDTLGHQLGDKILIETAQRLRRCVRSDDAVARI 531

Query: 613 SGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            G+ F ++L + ++      +++      +   +     + E++I   ASIG A   + +
Sbjct: 532 GGDEFVVVLENLDSNIESAKVEVEVVTTKILAVLNQSYRVDEQDIHSGASIGVALTDNGQ 591

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
           I   E+ K A++A+Y +K  G N +  F ++   +  +   +   L  AV+  +  L Y 
Sbjct: 592 ILIEELFKQADIALYQSKRSGRNQMCFFDLAMEETVTLQAQLANALHSAVQLQQFELYYQ 651

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
             +    +  VG EALI+W+HP+ G +S S+F+ +AE   +I +I  ++LE     +  W
Sbjct: 652 VQVD-SQQRPVGAEALIRWEHPQLGIVSPSDFIPLAEASDLILSIGQWVLETACAQLKRW 710

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           + Q +   + + +NI+ +        E +   I+    SPS +KL  +E+V++ N   + 
Sbjct: 711 QSQLHTSGLSVAVNISPRQFHQCNFVETVLQAIASCNISPSLLKLELTETVILDNTSETI 770

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
             + +L++ G+   LDDFGT  S LS L        K + S +      E    I+++II
Sbjct: 771 EKMHQLQRAGVEFALDDFGTGYSSLSQL--------KMDQSFVRNIGIKEGDDIIVQTII 822

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            MAK++   +IA+ +  E   + L  +GC   Q      P+      KLL 
Sbjct: 823 AMAKSLAIKVIAEGVETEAQHEFLDALGCPLFQGYLFGKPVPIAEFEKLLA 873



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRT 466
              +  + D V + D          +   I G +S   +   R+ +  +      +  R 
Sbjct: 207 RQILDRALDGVINLDKQGRVTYWNSEAERIFGYSSD--YAHSRDIIELLLPTHQHEVIRQ 264

Query: 467 ILDSFV---GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           +++ F+          ++E      D     + I    +   +G+   +     D+TE  
Sbjct: 265 LMEQFLVVGADDNNHHRFEINAVRKDGCKVPVEI-ALIVLQRDGE-CFFNCFVRDLTEHN 322

Query: 524 KSLEGILCNA 533
           K++E +  +A
Sbjct: 323 KNIEELRISA 332


>gi|302877361|ref|YP_003845925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302580150|gb|ADL54161.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1561

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 138/571 (24%), Positives = 245/571 (42%), Gaps = 13/571 (2%)

Query: 399  GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                  E++ L       + + +   D  ++ +        + G     + G   + L  
Sbjct: 996  ARRELDEQKKLTTKFFDAASEGLMITDSHQNIIKVNHAFVRMTGYDEADVIGKNPSLLSS 1055

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                D   +  +      +  G  Q E   R  D   +   + I  + + +G +  YI I
Sbjct: 1056 GKHED-TFYSAMWQEINQH--GWWQGELWNRRKDGTHYLEWLTIHTLRDEHGHLTNYIAI 1112

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +DIT  K +   +      D LT +PNR     R+      +         +M ID+D 
Sbjct: 1113 FSDITLIKAAQRRLEYMVAHDELTSLPNRNELRGRMAQTFARAQRHGGT-FALMFIDLDN 1171

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND LG   GD +L  +  R+G  ++  D +AR+ G+ F ++L    +  +IA+ A 
Sbjct: 1172 FKNVNDNLGHDYGDVLLQQVAERLGLCVRTEDTVARIGGDEFNVLLDDV-SETQIANTAQ 1230

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   ++ P  + E+++ V+ASIG A +         + KNA+ AMY AK +G +  + F
Sbjct: 1231 RILDHVSKPYLIKEQQVFVSASIGIAVYPKDAEDIETLTKNADSAMYQAKDKGKDSYQFF 1290

Query: 696  RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                       I+    L  A++ +EL LVY P   L   E++G EAL++W    +G + 
Sbjct: 1291 TSDLKEKINHRIEIGNALHKAIDANELKLVYQPEFNLQTGELIGAEALLRWHSSLFGIVG 1350

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              EF+ IAEE  +I  +  +++E+ AR +  WR      P  + +N+A + L    L   
Sbjct: 1351 PDEFIPIAEESDLILELGEWVIEQAARQLNLWRKADTPLPGTLFVNVAPRQLARQPLLAI 1410

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +   + K       + +  +E  ++ + E   + L ++    I + +DDFGT  S LSYL
Sbjct: 1411 ITRQLQKHRLPSGSLGIEITERTLVNSSEDISVKLHKIELEEIPIAIDDFGTGYSSLSYL 1470

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               P   +K     + G    E    I  +I  ++  ++   IA+ I  E  +  L  MG
Sbjct: 1471 KSFPISFLKIPNQFIDGITTDESDKGIATAIHGVSVALKLQTIAEGIETEDQLIMLREMG 1530

Query: 932  CDYIQDSHVASPLGFNSILKL-LKERFPLVK 961
            C   Q   +  P+  N  ++L +  R   V+
Sbjct: 1531 CQSGQGYLLGRPVDPNQFVELFISNRKSHVR 1561



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 7/173 (4%)

Query: 356  MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
            M+   +  N +  P       L  +++ F     ++      Q I S  +R +  +  S 
Sbjct: 838  MSFGGKHYNVLCFPYTSQDQTLGGVIVTFIDQTELME---AQQEILSSKDRLTGVMQNSP 894

Query: 416  DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
             ++   D             +I  L  GS  G        I           L   V ++
Sbjct: 895  MLISIKDPAGRYQFVNNAFESIFALTPGSAIGNTDT---QIFPESIAVLFEKLHFDVLHK 951

Query: 476  RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            + R++ E R+   D Q HW+     P+++  G +         +T +++  E 
Sbjct: 952  KNRVEAEERILIGD-QQHWLSFICYPINDEKGSVGAVCSQVIIVTARRELDEQ 1003


>gi|296106470|ref|YP_003618170.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
 gi|295648371|gb|ADG24218.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 771

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/586 (23%), Positives = 257/586 (43%), Gaps = 36/586 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443
           +        +    +   +  A+  S   V   D+ ++    +        I G      
Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G +      +   +       +             E      + +F+W  I + P+ 
Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S G +  YI I ND+T+++   + +L  A  D+LT +PNR   +DR+   +  +  +  
Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                + +D+D++K  ND LG ++GD +L ++  R+  + +  D +ARL G+ F I+L  
Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +N L+    A  + K I  PI + +  + +T S+G + +         ++K+A+L+MYH
Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +   ++    + + +   L  A++N EL+LVY P+I L    +VG EAL
Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W     G +S ++F+ +AEE  MI  +  + +++    +  W        + I +N++
Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKA-GFKNLSIAVNLS 608

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG----------NPERSRLLLGRL 851
            +      L E +  ++  +             S  +           + +     +  L
Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQ----------SRFLELELTESLLIEDIDHVVDTMYAL 658

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           + +G  L +DDFGT  S LSYL   P D +K + S +T     +   AI ++II +  ++
Sbjct: 659 KDMGTKLVIDDFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSL 718

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              ++A+ +  E     +T  GCDY Q     +P    +IL+ LK 
Sbjct: 719 NLQVLAEGVENEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764


>gi|228966673|ref|ZP_04127719.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228793049|gb|EEM40605.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 891

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 151/737 (20%), Positives = 311/737 (42%), Gaps = 50/737 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I  L  ++   
Sbjct: 168 PTIFKSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPIL-LIAIAGSI 226

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P    S     + + ++     +++                       I +   + ++  
Sbjct: 227 PEDHNSHKNYFIVNPIIGKKALVVF-----------------PYLAVAILIGFTLKEQTS 269

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ---------------------HVLATGYFSQGIFS 402
           +  +        + ++I      +Q                           + S+ +  
Sbjct: 270 SSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQ 329

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ++         D ++  D+    +      + +LG  +  + G        I   D+ 
Sbjct: 330 KQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKH 387

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                L+         LQ   +    D   +++ + I P+   +G I     +  DIT  
Sbjct: 388 KLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITAL 444

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK  E I   AF D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND 
Sbjct: 445 KKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAKIAES-EFALLYLDLDRFKAINDT 503

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   +      + + + 
Sbjct: 504 LGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMK 563

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSF 700
               + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK      +    ++  
Sbjct: 564 KSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIAKK 623

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ I
Sbjct: 624 IERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPI 683

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I +I  + LE+  + I  W        + I +N+++K+    +    + + ++ 
Sbjct: 684 AEETLQIISIGKWTLEQACKQIKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTLTN 742

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT
Sbjct: 743 TGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDT 802

Query: 881 VKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  
Sbjct: 803 LKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGY 862

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+  ++  +LL+ 
Sbjct: 863 YYSKPIHIDAFTELLEN 879


>gi|78221920|ref|YP_383667.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
 gi|78193175|gb|ABB30942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter metallireducens GS-15]
          Length = 820

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 151/600 (25%), Positives = 279/600 (46%), Gaps = 11/600 (1%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           ++   ++   +       +  +     +      +    I +        +    D +  
Sbjct: 228 QVGQGLLDTRVEVTARNEIGTLAVAFNRMTGELQFTKNEIVTARNFLDNVIQSMADALVI 287

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
                  ++  P + TILG     + G     +      +R+  R      +  R    +
Sbjct: 288 LSTDWTIISVNPALCTILGYGENELLGSPFGRIVAGGAEERELLRE-----MAERGQVPE 342

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E    A D     + +    M +  G+++  + IA+DI+E+K+S E I   AF D LT 
Sbjct: 343 RELIYLARDGAAIPVSVSGAVMRSPTGEVVGIVCIAHDISERKRSEEEIRRLAFYDPLTR 402

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  F D+L   +  S TD ++   ++ +D+D++K IND LG A GD +L+++  R+G
Sbjct: 403 LPNRSLFQDKLAQAIRRSRTDGDM-IALLFLDLDRFKDINDTLGHAYGDQLLLAVAARLG 461

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           + L+  + LARL G+ F  ++    +   +   A ++ + +  P  + ++E+ ++ SIG 
Sbjct: 462 DNLRPTEFLARLGGDEFVFLVTGLRDKRSVGSLAHSILELLNTPFEIDDKELFISTSIGI 521

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS 718
           A           +L +A++A+Y AK +G N    F    +    +R  ++  L  A  N 
Sbjct: 522 ALSPGDGDDGDTLLTHADMALYAAKEQGRNAFSFFSEELNREARERRHLEGSLHRAFAND 581

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E +L Y P I L    I   EAL++W HP+ G I  + F+ +AEE  +I+ +  ++L   
Sbjct: 582 EFFLEYQPQIELRSGRIFSFEALVRWQHPEDGLIYPNRFIPVAEETGLIRRLGEWVLRTA 641

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                 W+ Q  +PP+ + +N++          + +  ++ +T   P  ++L  +ES +M
Sbjct: 642 CLQCRQWQ-QPGLPPVRVAVNVSGHQFNQPGFIDMVDRVLEETELDPELLELELTESSLM 700

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
              + S + L  L+  GI L +DDFGT  S LSYL + P D +K + S +          
Sbjct: 701 AGAQESIMTLIDLKVRGIHLAIDDFGTGYSSLSYLKHFPLDRLKIDRSFVRDIVKDLDDR 760

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           AI+ +II MA ++   ++A+ +  E +++ L   GCD +Q  + A PL   ++ + LK R
Sbjct: 761 AIVEAIIAMAHSLGLRVLAEGVEHEDELELLKERGCDEVQGFYFAHPLLPAAVEENLKVR 820


>gi|189352742|ref|YP_001948369.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189336764|dbj|BAG45833.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 749

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/567 (23%), Positives = 249/567 (43%), Gaps = 13/567 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452
             +Q +    E   L V    + +         + + P    +L  A G + G   +   
Sbjct: 181 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELVGRRMSTVI 239

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509
           L  +  +      +       +      L Y      AD    W+     P+    +   
Sbjct: 240 LRKLSEDGTPIAPSRWPSRRALTSGTPVLDYTVGFGLADGDVIWVRGNAVPIVKPGDTQA 299

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTV 568
              +   +DI   +++ + +   A +D LTG+ NR+   DR+  +           R  +
Sbjct: 300 ASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAI 359

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+  +KK+ND  G   GD +L S+  R+   ++    L R+ G+ F I++   ++  
Sbjct: 360 LFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPE 419

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  +  +IA P  +   E  +  SIG +        ++ +++NA+ AMY AK RG
Sbjct: 420 ALAALAREVIDAIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRG 479

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            NH   F        +    I++ L  A+ ++ L L Y P++       VG EAL++W  
Sbjct: 480 RNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTGRTVGAEALLRWTS 539

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +   
Sbjct: 540 PELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFH 598

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E +   +++T   P  ++L  +E V+M +      +L  L ++ + +++DDFGT 
Sbjct: 599 D-GLVESVSRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTEMNVRISVDDFGTG 657

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  E   
Sbjct: 658 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQS 717

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
             L ++GCD  Q    + PL      +
Sbjct: 718 WFLQQIGCDMQQGYLFSRPLDPVDYAR 744


>gi|307293301|ref|ZP_07573147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306881367|gb|EFN12583.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 840

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 129/574 (22%), Positives = 247/574 (43%), Gaps = 10/574 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++ + A     + +    ER  LAV  +   +WD+D V    T + +  ++LGL+  
Sbjct: 266 YGTLEDIHAQKLAQRELADSEERFRLAVQSARLGIWDFDAVAGTRTWSQEFRSMLGLSDT 325

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAAD-NQFHWMIIRIRP 501
                    L  +H  DR     +LD+    R     +   R+  AD     W+      
Sbjct: 326 E-PATSELALKLVHPEDRPRLAVMLDAVASERMPPHFEATLRIYRADTGALRWIKSVGWR 384

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             + +G  LR I    D+TE++ S + I   A  D +T +PNR  +   L  + + +   
Sbjct: 385 SFSDSGRPLRVIVTFQDVTEERDSEDRIRWAATHDPMTRMPNRALWQATLEEMTEQARRR 444

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +    ++++DID  K+ ND+LG   GD +L    +R         ++ RL G+ FG+I 
Sbjct: 445 GD-SFGLILVDIDDLKRTNDMLGHDAGDALLCGFAQRFAACAPADAMVGRLGGDEFGMIA 503

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            S  +   +  ++  +   +  P     R +    SIG A +      ++E+LK A+LA+
Sbjct: 504 PSLTSGAALTVWSAELLGGVRTPYVHNGRSLDCGISIGGAVFGEHGDNAAELLKAADLAL 563

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y +K  G   +  F+       +    +      A+ +  +   Y P   +    I+G E
Sbjct: 564 YASKSSGRGRLTLFQSQLRAEAQQRSSMIHMARQAIADDLVVPHYQPKADMKTGRILGYE 623

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP+ G  +        +   +   +   ML ++ RD+  W      P   + IN
Sbjct: 624 ALLRWEHPRTGVHAPDTIAAAFDNAEIAVELTEIMLAKVVRDVDRWLRSGYDPG-RVAIN 682

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            ++ D + ++  + + A +++    P R ++  +E+V +G   E+    L RL   G+ +
Sbjct: 683 ASAADFMQHDFADHVLAHLARYAVPPQRFEIEVTETVFLGRGAEQVERALHRLSAAGVRI 742

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  + LS+L   P D +K + S ++          I+ +I+ +  ++   ++A+
Sbjct: 743 ALDDFGTGYASLSHLKQYPVDVLKIDRSFISNIERDAGDAVIVDAIVNLGNSLGMEVVAE 802

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +        L   GC   Q   +  P  + ++ 
Sbjct: 803 GVETAGQADLLIARGCVIGQGYLMGRPRPWAAVR 836



 Score = 95.0 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 3/148 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            +     ++       +  +    +    +V  S  + W      +     P    + G+
Sbjct: 137 TVEDVDERYDRDRRALADALAESRQHYRWSVELSPQVPWTAAPDGEVEEIGPRWRDLTGI 196

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G    W+  +H +D +   +I    V      +  ++R+R  D  + WM  R  
Sbjct: 197 DPEQAKGS--GWIDSLHPDDVERTTSIWMEKVR-SGDPVDVDYRLRLVDGSYRWMRSRAS 253

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEG 528
              ++ G I+R+ G   DI  QK +   
Sbjct: 254 ARRDAKGRIVRWYGTLEDIHAQKLAQRE 281


>gi|218532694|ref|YP_002423510.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacterium chloromethanicum CM4]
 gi|218524997|gb|ACK85582.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylobacterium chloromethanicum CM4]
          Length = 1423

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/585 (23%), Positives = 265/585 (45%), Gaps = 19/585 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               ++ +         + +  ER  LA+     + W+ ++   R T + +   + G+ S 
Sbjct: 852  VGAMRDITEQRRADSALRASEERLRLALHAGRMVAWERNLRTGRTTRSENSLDLFGIGS- 910

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               G    +L  +H +DR     ++      R  R   EFR    D +  W+        
Sbjct: 911  ---GSASQFLDRVHPDDRGRTERLVQQGSQRREQR---EFRYIHPDGRLIWL-ASAVERV 963

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +++    R +GI  DITE+K + E     A  D LTG+PNR+ F  RL   L  +     
Sbjct: 964  DAD----RLVGITFDITERKCAEEQAWRAANHDALTGLPNRRLFRQRLEQALTSA-ECGG 1018

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +++++D+D  + +ND LG   GD VL+ + +R+ + L+  D +ARL G+ F ++L  
Sbjct: 1019 ASVSLLLLDLDHLRDVNDTLGHDAGDTVLMEVAQRLQDGLRATDTVARLGGDEFALLLAE 1078

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +    A A+ + +  P       ++  ASIG A++      S E++K+A++A+YH
Sbjct: 1079 PMRMDQAVIHARALIERLRQPFCHRGHMLSCKASIGLAAYPDHHHESHELMKDADIALYH 1138

Query: 684  AKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK +G N V  F             I  ++  AV    +   Y P +      IVG EAL
Sbjct: 1139 AKAKGRNGVVVFAPEMRAETERRVQIASEVQTAVVAGHIVPFYQPKVCFSTGAIVGFEAL 1198

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
             +W HP+ G ++   F    ++  +  AI   +L ++A D+  W+++   P   + +N +
Sbjct: 1199 ARWQHPERGLLTPGYFGSAFDDPELATAIGESILRQVACDLREWQERGLAPG-RVAVNFS 1257

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTL 860
            S +    +L   +  ++ +     +  ++  +E+V +GN  E     L +L+  G+ +TL
Sbjct: 1258 SAEFRKADLAATILIVLDEYDVPANLFEVEVTETVFLGNGTENVPATLQQLQDAGVLITL 1317

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  + L++L   P   +K + S +    +     AI+ +++ + ++++  + A+ +
Sbjct: 1318 DDFGTGFASLTHLKQFPVGHLKVDQSFVRNMEQDKGDAAIVAAVVGLGRSLDMKVTAEGV 1377

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                    L  MGCDY Q    + P+  + +   L+        +
Sbjct: 1378 ETAGQAIRLREMGCDYAQGYRYSKPMASSRVPWFLRNWNSEAVRS 1422



 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 4/316 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      +          L    + D +   D+       +P ++ +LG     + G   
Sbjct: 156 LRLSKAERNARESAADYRLLADNTNDTIIRSDLDGTLRYVSPAVSRLLGYEPHELFGT-- 213

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDI 509
           + L  +H ++   +  +L+     +  +   + R R  D  + W+ I          G+ 
Sbjct: 214 HPLASVHPDEASGYGQLLEQIGTGQISKAVTQQRYRRRDGTYVWVEISFNLTREEESGEP 273

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+ +  D++++K +   +   A  D LTG+PNR  F ++L   +  +    +    ++
Sbjct: 274 NGYVAVIRDVSQRKAAESEMAHIARHDPLTGLPNRLHFREQLEQEIRRTKRTGST-FALL 332

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K +ND LG   GD +L  + +RI  +L+  D ++RL G+ F II  +   +  
Sbjct: 333 CLDLDRFKLVNDSLGHQAGDQLLKVVAQRIRSVLRTEDTVSRLGGDEFVIIQTNCARAED 392

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            +  A  +  ++  P++L      +  SIG A      +    +   A+ A+Y AK  G 
Sbjct: 393 ASRLAERLIAAMLPPVDLGGYPAGIGVSIGIALAPRDGLDHDHLYARADQALYRAKDAGR 452

Query: 690 NHVESFRVSSFRSDRV 705
           N    +        R+
Sbjct: 453 NTFRLYAEEEVGCSRM 468



 Score =  131 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 6/154 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             +  +   ++ I    ER  LA+L + D +WD DI  D +T +     + G +   +  
Sbjct: 727 SDIHESKQATEAIRLQEERYRLAMLATQDAIWDHDITSDTITWSEGAHPLFGYSDAGIAS 786

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W   IH +DRD     L  F+  R  R   E+R   AD  +  +I R   + ++  
Sbjct: 787 TGAWWRSKIHPDDRDRVTASLKEFIDGRESRWSEEYRFARADGSYAAVIDRGFVIRDAEA 846

Query: 508 DILRYIGIANDITEQKKSL------EGILCNAFQ 535
             +R +G   DITEQ+++       E  L  A  
Sbjct: 847 QAVRAVGAMRDITEQRRADSALRASEERLRLALH 880



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 134/420 (31%), Gaps = 33/420 (7%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   + + + A       + +   R    +  S  +VW        +  +       G +
Sbjct: 596 LILAISRDITAQVELESDLQTTASRYKALIEASATMVWRATSDGSLIE-SSGWEAYTGQS 654

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +  G    WL  +H +D     +        R     +EFR   AD  + W + R  P
Sbjct: 655 ESAYSGH--GWLNTVHPDDLHRVTSTWHEIFASRTAG-SFEFRALCADGTYRWTLTRATP 711

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + ++ G +  ++G  +DI E K++ E I     +        R + L     I D   T 
Sbjct: 712 LKDTAGQVQEWVGTDSDIHESKQATEAIRLQEER------Y-RLAMLATQDAIWDHDITS 764

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN--RFGI 619
           D +  +         +  + + G +  D  + S        +   D   R++ +   F  
Sbjct: 765 DTITWS---------EGAHPLFGYS--DAGIASTGAWWRSKIHPDDR-DRVTASLKEFID 812

Query: 620 ILISENNSL-KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
              S  +   + A    +    I     + + E     ++G     + +  +   L+ +E
Sbjct: 813 GRESRWSEEYRFARADGSYAAVIDRGFVIRDAEAQAVRAVGAMRDITEQRRADSALRASE 872

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIV 736
             +  A H G        + + R+ R     DL        S+     HP  R   E +V
Sbjct: 873 ERLRLALHAGRMVAWERNLRTGRTTRSENSLDLFGIGSGSASQFLDRVHPDDRGRTERLV 932

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAE-----ELCMIKAINLFMLERIARDIISWRDQANM 791
              +  +              + +A      +   +  I   + ER   +  +WR   + 
Sbjct: 933 QQGSQRREQREFRYIHPDGRLIWLASAVERVDADRLVGITFDITERKCAEEQAWRAANHD 992


>gi|253996206|ref|YP_003048270.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253982885|gb|ACT47743.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 834

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 134/575 (23%), Positives = 257/575 (44%), Gaps = 12/575 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSM 445
            + +    +    +          V      +  +D+   R+           +     +
Sbjct: 261 ARDISEKQHLVSEVTKQRNAYQSLVQNLPTTIIRYDLDGKRIFVNSRCFETYNIEVPYEL 320

Query: 446 HGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +     W     +++   +    +++      +  L  E      D +     +RI P  
Sbjct: 321 NKTPLEWWSPYIVNVTGAEFMTQLMEVMQFNVQKTL--EIHSMHED-KVAVHQLRIVPEF 377

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +    +   + IA DITE  +    I   AF D LTG+PNR  F  +L+  +D + T+ N
Sbjct: 378 DEVHQVCGALTIATDITEVAEYRRKIESMAFHDQLTGLPNRTLFSQQLSVAIDQAKTN-N 436

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++++D+D++K IND +G A+GD +L+ + RRI   L      ARL G+ F I++ S
Sbjct: 437 SQFALIILDLDQFKSINDTMGHAIGDKLLIEVARRITNSLDQHCTCARLGGDEFIILVES 496

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   +   +  +   I     +   E  ++ASIG A +        ++LK A+ AMYH
Sbjct: 497 VPSREHVEYVSNVLLNQIMQVYVIDGSEYFISASIGIAYFPDDSEDMDDLLKYADSAMYH 556

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N   ++  +   S +  +  + +L  A+EN E+YL Y PI+ +   ++ GLE+L
Sbjct: 557 AKKGGRNRYHTYSPAITESIQHRLNVETELRRAIENDEIYLEYQPIVDMTSNQVKGLESL 616

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W   K G +S   F+ IAEE  MI  +  +++    +      +     P+ + +N++
Sbjct: 617 CRWHSRKLGIVSPMVFIQIAEETGMIVELGQWIMREAFK-AARLLNAQLKHPVSVSVNLS 675

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++   + +L   ++ L+ +   +P+ IK   +ES+++ + +     L     +GI ++LD
Sbjct: 676 ARQFFEVDLIHQVRHLLKEQQCNPAWIKFEITESLLLESNQSVLNALNAFNDLGIKVSLD 735

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P   VK + S +           ++++II +   +   +IA+ + 
Sbjct: 736 DFGTGQSALAYLSKFPIHQVKIDYSFVKEITSNPNDALLVKAIIALTATLNKELIAEGVE 795

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                  L   GC Y Q    + P+   ++ + L+
Sbjct: 796 TSAQATLLQSYGCRYAQGYLYSKPISLQAVQQYLE 830



 Score = 46.9 bits (110), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 54/183 (29%), Gaps = 5/183 (2%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            I    A   R+  D++  + +      V+ +              +Q      +     
Sbjct: 99  LINFEHASLSRVIYDLVHFSAIKNQQNQVVGVIAVGRDLDFNKQQKNQETVQREQYLRAL 158

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILD 469
           +     IVW  D     + T      ++G      + G            +        D
Sbjct: 159 MDTFPFIVWMKDKSGRFMATNRKFVEVVGAKHYEDLEGKTDFDFF---PTEMAQGYACDD 215

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +        +  +++    + +W      P+   +G ++  +G A DI+E++  +  +
Sbjct: 216 EEILKTGVPKSFNEQIKKETGEIYWAETYKSPVQ-LDGQVIGTVGFARDISEKQHLVSEV 274

Query: 530 LCN 532
              
Sbjct: 275 TKQ 277


>gi|226228483|ref|YP_002762589.1| hypothetical protein GAU_3077 [Gemmatimonas aurantiaca T-27]
 gi|226091674|dbj|BAH40119.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 556

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 144/544 (26%), Positives = 253/544 (46%), Gaps = 23/544 (4%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               V      A ++G   G+     R    ++H +D    +  L        G  + ++
Sbjct: 13  NGRLVYANEAAAHLIGARQGADILRRRA-SDFVHPDDLALVQQRL------TSGPARVQY 65

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R+R  D+    +   +       G       +  D+TE+K+    +L  AF D LTG+ N
Sbjct: 66  RLRRLDDGIREVEA-VSVSIAFEGTPA-MQTLFRDVTERKELEARLLHGAFHDALTGLAN 123

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F DRL   L ++  D + R  V+ +D+D +K +ND LG   GD +L +++ RI   +
Sbjct: 124 RALFRDRLEHALQVAGRDPDHRIAVLFLDLDDFKGVNDSLGHDAGDQLLRTVSERIMAEV 183

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D +AR  G+ F ++L       +       ++ ++  P+ L  R ++V  S+G A  
Sbjct: 184 RASDTVARFGGDEFAVLLERLPTESEALTIVNRIKVALRRPLMLEGRLMSVATSVGVAYA 243

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL---AVENS 718
           T        +L+NA++AMY AK  G      F  S +     R+ ++ D+ +   A E S
Sbjct: 244 TP-ADDVDTLLRNADVAMYEAKEAGKARHAVFEPSMYAAIVQRLQLEADIRMAAGAPERS 302

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            L+L Y PI+ L    + GLEAL++WDHP  G ++ S F+ +AE   +I  +  ++LE+ 
Sbjct: 303 GLFLAYQPIVDLRTGAVRGLEALLRWDHPTRGTVTPSVFVPVAEHTGVIVPLGRWVLEQA 362

Query: 779 ARDIISWR------DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
              +++WR       +       + +NI+ + L + +  + + A++ +T      I L  
Sbjct: 363 CTQLMAWRTQWWRERRQPDSVPSVSVNISGRQLAEEDFVDEVAAILQRTGAPAGSITLEI 422

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ESV+M N E S   L  L+ +G+ L +DDFGT  S LSYL   P D +K + + + G  
Sbjct: 423 TESVIMRNTESSLRTLSALKALGLRLAIDDFGTGYSSLSYLQKFPVDVLKIDRAFVEGVA 482

Query: 893 E--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +     A+ R+I+ +   +    +A+ +      + L  MGC   Q    +     + I 
Sbjct: 483 QGGSDAALARTIVTLGTTLGLRTVAEGVETSSQQEALEAMGCVDGQGYLFSPARPVDEIT 542

Query: 951 KLLK 954
             L+
Sbjct: 543 AWLR 546


>gi|121998494|ref|YP_001003281.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589899|gb|ABM62479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 749

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 141/567 (24%), Positives = 245/567 (43%), Gaps = 19/567 (3%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                 E+  +A      +GD +   D      T       I G   G   G     L  
Sbjct: 182 ERRRSEEQLRIAARVFEDAGDAIVVTDPDGHVQTINNAFTRITGYTEGEALGNTVCAL-- 239

Query: 456 IHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
               D                 R G  Q E   R    + +   + I  + ++ G    +
Sbjct: 240 ---LDSGRHSEAFHKEKQESLDRSGYWQGEIWHRRKGGELYPEWLTINRIDDATGQPQHF 296

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +DIT+ K +       A  D LTG+PNR  F DRL   +  +   +  +  +M +D
Sbjct: 297 VAVFSDITQLKDAHSRSEYLANHDPLTGLPNRSLFQDRLQQAIAQTQRHEG-QVGLMFLD 355

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K IND LG  VGD++LV +  R+GEL++  D +AR+ G+ F ++L    +  ++  
Sbjct: 356 LDHFKTINDTLGHEVGDELLVQVAERLGELVRDVDTVARIGGDEFTVVLTDC-DPEEVGS 414

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + +     +  RE+  T S G A +         + K A++AMY AK  G N +
Sbjct: 415 IAQRLVEGLGGTFVVDGRELQATPSAGLALYPRDGEDVHTLCKAADMAMYRAKEDGRNRL 474

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKW 749
                           ++E L  A+   EL LVY P     D   +VG EAL++W  P  
Sbjct: 475 RLCESGLHQRLLKDTALEEALRRALTQGELRLVYQPQFDASDPGRVVGAEALLRWHDPAS 534

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS   F+ IAE   +I  ++  + E +   + +W    + PP  I  N+++K      
Sbjct: 535 GPISPGRFIPIAERSDLILELDRRVEELLCEQLNTW-SAGHAPPAPISFNVSAKSFRQGH 593

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +  ++S+   +  ++++ F+E  +          + RL + GI+L +DDFGT  + 
Sbjct: 594 WTKRLFRILSRYGVAAEQLQVEFAEGTLSERAGVVPEEIRRLHEGGIALAIDDFGTGFTS 653

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +P   +K + S + G    E   AI+R+ + +A+ +    +A+ +  +  +  L
Sbjct: 654 LVNLKQLPLAELKIDQSFVAGLGQDEDAEAIVRASLAVAEAMGLRTVAEGVETQRQLTWL 713

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954
              GC  IQ S +++PL       L++
Sbjct: 714 QEQGCQRIQGSLLSAPLEAEDFEALIR 740



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 4/168 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
              A    LV  + L    +             + +  +R       +       D    
Sbjct: 32  WSRADTQSLVAELELHQQELRIQNEELQQARDRLETALDRYHDLFQRAPVGYLLLDDEGR 91

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                   A +L    G + G + +    +   D      +    +   R     E  + 
Sbjct: 92  IWEANRAAADLLA-PGGDLTGQLLSDFVAVDAQD---ALYLHWRALTAARAPQAVELTLA 147

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            A+     + +       ++    R+     DITE+++S E +   A 
Sbjct: 148 WAEGASCAVRMESSVEPTADRSPCRFRCALMDITERRRSEEQLRIAAR 195


>gi|163852193|ref|YP_001640236.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663798|gb|ABY31165.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 954

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 248/572 (43%), Gaps = 27/572 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454
              +     +   A+      +  +D     +        + G+ + ++     IR+   
Sbjct: 391 EDQLKRSNAQLDAALSNMLQGLCLYDAEGGLLVYNRRFCDMFGVDAAALRPGMSIRDVAR 450

Query: 455 YIHIN-DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  + D      +L     +  R         +R            I  +         
Sbjct: 451 LVEASSDNGRAIDLLVEQEALLQRGLSASLCCPIRT---------DCIVALKQQPTAEGG 501

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I    D+T++ ++   I+  A +D LTG+ NR  F +RL                 + +
Sbjct: 502 WIATYEDVTQRYEAEARIITMARKDALTGLANRMVFGERLEEAAARLDDGAGAGFATLCL 561

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN----S 627
           D+D++K++ND LG  +GD +L S+  R+   L+  D++ARL G+ F I+           
Sbjct: 562 DLDRFKEVNDTLGHPIGDGLLRSVAERLQGCLRDTDLVARLGGDEFAIVQAGVQAGTHAR 621

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +  A  +  +   P  L    +TV  SIG +       +  ++LK+A+LA+Y AK  
Sbjct: 622 RDASALAKRLIAAFQQPFLLDGHTVTVGLSIGISLAPEHGTSPEKLLKSADLALYRAKAT 681

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F          R  ++ DL  AV N E  LV+ PI++L  + I   EAL++W 
Sbjct: 682 GRGCWAFFDEEMDVELRKRRALESDLKKAVGNGEFELVFQPIVKLDRQRIASCEALLRWR 741

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S ++F+ +AEE   I  I  ++L +   +  +W        I + +N+++   
Sbjct: 742 HPERGYVSPADFIPLAEETGTIGEIGEWVLRKACSEAATWPS-----NIRVAVNVSAAQF 796

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +  +   +   ++ +     R++L  +ESV++ +   +   L  L+++G+ + +DDFGT
Sbjct: 797 KNAAVVRAVMDALAASGLPAHRLELEITESVLLNDSVTTLATLHTLKRLGVRVAMDDFGT 856

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFD +K + S +           I+RS++ + +++  T  A+ I  E  
Sbjct: 857 GFSSLSYLQSFPFDKIKIDQSFVRNLAAPGNSRLIVRSVVGLGRSLGITTTAEGIETEAQ 916

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +++L   GCD  Q    + P+   +I +L+  
Sbjct: 917 LEQLRLEGCDEGQGYLFSRPVPSATIRELVTA 948


>gi|146284223|ref|YP_001174376.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri
           A1501]
 gi|145572428|gb|ABP81534.1| putative sensory box/GGDEF family protein [Pseudomonas stutzeri
           A1501]
          Length = 751

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/594 (23%), Positives = 256/594 (43%), Gaps = 32/594 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           ++ I F  +   + T   +Q   +     R + A+ GS D +W+W++  D++  +     
Sbjct: 146 LLKIVFFDMILAIDTYSAAQRHALEDSEARLTRALRGSEDGIWEWNVEHDQLHLSERWTA 205

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +LG+         R+W   +H +D    R  +   +  R   L +E+RVR     + W++
Sbjct: 206 MLGM-PAQPSYTSRSWFERVHPDDLPGLREAIADHLNGRTPSLAHEYRVRIEGGDYLWVL 264

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +R        G  LR  G   DI+ +K + E +   A  D LTG+ NR    + L  +  
Sbjct: 265 VRGVAERCEQG-TLRMAGSQTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEV-- 321

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      ++ +D+D++K IND LG   GD VLV + +R+   L+  D LAR  G+ 
Sbjct: 322 -QQRPHGRATALLFVDLDRFKLINDSLGHGAGDQVLVEVAQRLLRCLRPGDHLARFGGDE 380

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  +L            A  M  ++  P+ L ER ++V+ASIG A         + + + 
Sbjct: 381 FVALLGDLACEADAERVAQRMLVALRQPLQLGERTLSVSASIGIAPLQRDGQALNAL-QA 439

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LA+Y AK  G +    F     S  + ++ ++  L  A+   E  L Y PI R+    
Sbjct: 440 ADLALYRAKSAGKDQFALFCDGLHSKAARQLELESALAQALTRREFALHYQPICRVEQGR 499

Query: 735 --IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +VG+EAL++W       ++  EF+ + EE   I  +  ++L      +  W+      
Sbjct: 500 PYVVGVEALLRWRFND-KPVAPHEFIPVLEESREIVRVGEWVLREACCQVRRWQQA-GQT 557

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES--------VVMGNPERS 844
            ++  +N++ + L      + +  ++ +T   P         S        ++M + E +
Sbjct: 558 QLYCAVNLSIRQLQQPGFTDLLARVLRETGLRPD--------SLLLEITETLLMQDSEAT 609

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
              L  +  +G+ L LDDFGT    L YL   P   +K + S +         +AI R++
Sbjct: 610 MSSLHEIAALGVRLALDDFGTGYCSLGYLKRYPLHVLKVDRSFIAAAPDDPDSVAISRAV 669

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I + +++   ++A+ +     +  L   GC  +Q    + P     + ++    
Sbjct: 670 IGLGQSLGLAVVAEGVERPEQVAFLGAEGCQLVQGYWFSPPRSAAELQRMFDRE 723


>gi|118589369|ref|ZP_01546775.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
 gi|118438069|gb|EAV44704.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
          Length = 830

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/743 (20%), Positives = 299/743 (40%), Gaps = 36/743 (4%)

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +   +     +    L+  +      L +       A  S + +     L+    HA +
Sbjct: 88  VLVITITFRSFMPMSLLALWIAAIGTFLSLTLFKWLKARKSPVQLASRRSLNKAVTHATI 147

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
              +          F       +  AS     +     +    +     +          
Sbjct: 148 --FSSLWAVVPVAAFAYGDADGIWIASCLTTGMLCGGAFALATVPQAAFR---------- 195

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IF 401
            W+ +      +  AI      ++     +     +V++        + A+ + ++  + 
Sbjct: 196 -WVSVLFVASLMSFAIG--RSAELWPLFFLLTSYTLVVIGSIASAAWLFASHFLAEAELE 252

Query: 402 SDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-I 456
             GE  +L +      S D +W  D      + +       G  S  +       L Y +
Sbjct: 253 HRGELIALLLNEFEEKSSDWLWKTDSHGILHSISDRFLHASGRQSAELETMRMVDLAYSL 312

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +D  +  T L++ +  ++   +    V     +  W  +  RP+ + +G    Y G+A
Sbjct: 313 DESDARSAVTKLENAMKRQQAFREIVIGV-DVKGEERWWSLAARPVYDDHGSFTGYHGVA 371

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DITE  ++   +   A  D+LTGI NR  FL +    L+    +     T+ +ID+D +
Sbjct: 372 SDITEAHRASALVSHLAEHDSLTGIGNRSWFLKQAEAQLEEQNQNGQNTLTLFLIDLDNF 431

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD++L  +  R   L +   +LAR  G+ F  +    ++      FA  
Sbjct: 432 KVVNDTSGHPAGDELLRQVASRFTALGEGRTMLARFGGDEFAALGRFVSD-QAALAFAEE 490

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P  +  R+  + A++GF     SK T  ++++ A++A+Y AK  G     +F 
Sbjct: 491 LVAVTRKPFRIGRRDFAIGATVGFTRLHDSKDTVDDLMRKADIALYKAKEGGRGRSLAFE 550

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R  R   +   DL  A E  +L + + PI+     ++V  E L++W HP  G +  
Sbjct: 551 QDMEREVRERRELESDLREAFEYGKLNVDFQPIVDARSGKVVSSEVLVRWLHPVRGEVRP 610

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   +I  +  ++L++         +        + +N++    +D  L E +
Sbjct: 611 DVFIPIAEHAGLILPLGSWVLKKACAAAAQCPELE-----SVAVNLSPVQFMDPNLVEQI 665

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T + P R+ L  +ESV + +   + + L +LR +GI + LDDFGT  S LSYL 
Sbjct: 666 LGVLQETGFPPERLVLEITESVFLRDFGTASIKLQKLRDLGIRIALDDFGTGYSSLSYLR 725

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           +  FD +K + S +    E    +AI+ ++I +A N+   + A+ +  +  +  L  +GC
Sbjct: 726 HYKFDKIKIDKSFVDEIGERSDGLAIISAVIALAHNLGLEVTAEGVERQFQVDALRTLGC 785

Query: 933 DYIQDSHVAS----PLGFNSILK 951
           D +Q  +       P+    I +
Sbjct: 786 DTMQGYYFGKPDPNPMRVAQIRR 808


>gi|240138817|ref|YP_002963292.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens AM1]
 gi|240008789|gb|ACS40015.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens AM1]
          Length = 777

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 144/549 (26%), Positives = 246/549 (44%), Gaps = 29/549 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                  +   +W  D      V          G +  +                     
Sbjct: 242 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 286

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   V +   R     R R AD     + +  R ++   G     +G A D+TEQ+++
Sbjct: 287 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 344

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   A  D LTG+PNR  F  RL  ++   A        ++ +D+DK+K +ND LG 
Sbjct: 345 EARITHMAHHDALTGLPNRALFTTRLAEVIAEHART-GAGAALLCLDLDKFKLVNDTLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L ++  RI   L   D++ARL G+ F ++L     +  ++  A  + ++++ P+
Sbjct: 404 PAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLR-TPYAGTVSAVAGRIIEALSHPV 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +RE  +  S+G A        S  +L++A+LA+Y AK  GG     F  +    DR 
Sbjct: 463 RLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGCIAHYFEAAMDSWDRS 522

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               + DL  A    +L L Y P++ +    IVG EAL++W HP  G I  SEF+ +AEE
Sbjct: 523 RRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEE 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L +   +   W D     P+ I +N++     D  L   ++  ++ +  
Sbjct: 583 TGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALALSGL 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P R++L  +ESV++   E +   L  LR +G+ + +DDFGT    LSYL   PFD +K 
Sbjct: 638 APHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKI 697

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++  G      AI++++I +  ++    +A+ +  E+    L   GC+ +Q     
Sbjct: 698 DRSFVSRLGEDPHSTAIVQAVIGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLFG 757

Query: 942 SPLGFNSIL 950
            P+     +
Sbjct: 758 RPIPAPQAV 766


>gi|218230789|ref|YP_002368334.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218158746|gb|ACK58738.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 828

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 164/759 (21%), Positives = 309/759 (40%), Gaps = 30/759 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 81  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 136

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 137 YLYFYLQDDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 196

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 197 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 250

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 251 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 310

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 311 GKESAALIGKEC--FSIFLDEDKSELEAAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 367

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 368 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 426

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND L  ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 427 QKTQD-KFGLLYIDLNRFKTINDTLSHSIGDKVLKEVAKRFRTCLSPTIPLARIGGDEFA 485

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 486 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 544

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 545 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 604

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 605 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 663

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + M + I +     + I L  +E + M +   +   L  L+  G+
Sbjct: 664 GINLSAIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDERETLSKLKALKSFGV 723

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 724 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 783

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L
Sbjct: 784 AEGVETKEQLTVLQRNVCYLIQGYYYSKPVNEDEFMDFL 822


>gi|78062868|ref|YP_372776.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. 383]
 gi|77970753|gb|ABB12132.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           sp. 383]
          Length = 749

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/568 (23%), Positives = 246/568 (43%), Gaps = 11/568 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-L 453
             ++ +    E   L V    + +         V + P    ++ +    +   +    L
Sbjct: 181 RIARQLARSEEHHRLVVNSLHEGILVVSRDGVVVASNPSANRMMRVKGDLVGRRLSTVIL 240

Query: 454 PYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL- 510
             +H +              +      L Y      AD    W+     P+      +  
Sbjct: 241 RKLHEDGTPIAPDEWPSRRALETATPLLDYTVGFGLADGDIIWVRGNAVPIVRPGEKLAD 300

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVM 569
             I   NDI   +++ + +   A +D LTG+ NR+   DR+  +           R  ++
Sbjct: 301 SVIVSFNDIGPVREAQQQLRYLATRDALTGLYNRRWLGDRMRELFGGHDAAGGPARVAIL 360

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   ++  +
Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAARLAACGGGQYALTRVGGDEFVILVDDCDDPDR 420

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +A  A  +  +IA P  +   E  +  SIG +        +  +++NA+ AMY AK RG 
Sbjct: 421 LAVLAREVIDAIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGR 480

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           NH   F        +    I++ L  A+ +  L L Y P++       VG EAL++W  P
Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALSSDMLRLAYQPVVDARSGRTVGAEALLRWTSP 540

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +    
Sbjct: 541 ELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-H 598

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L E +   +++T   PS ++L  +E ++M + +    +L  L  + + +++DDFGT  
Sbjct: 599 EGLVESVDRCLAQTQLDPSALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  +    
Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSW 718

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L ++GCD  Q    + PL  N   + L
Sbjct: 719 FLQQIGCDMQQGYLFSRPLDPNDYARRL 746


>gi|260223174|emb|CBA33472.1| hypothetical protein Csp_B19230 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 886

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 143/566 (25%), Positives = 260/566 (45%), Gaps = 19/566 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               +    ER       S D  W+ D     V    +     G+ S  +          
Sbjct: 322 ALAQLQESEERFRSLSSLSSDWYWEQDAEFRFVRIDGN-----GINSDRLAPQGALGRTR 376

Query: 456 IHINDRDNFRTILDSF---VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                R        +    +   +    +E +   +D  F W+ I   P+ ++ G    Y
Sbjct: 377 WDSGGRGVTPAQWKAHQDLLEAHQTFQDFEMQRVLSDGSFMWVSISGAPIFDAQGKFCGY 436

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            G   DI+ +K +   I   AF D LTG+PNR+  +DRL   LD S  +      ++ ID
Sbjct: 437 RGTGRDISARKAAEAEIERLAFFDALTGLPNRRMLIDRLKHALDSSTRNRQ-HGALLFID 495

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----S 627
           +D +K +ND LG  +GD +L  + +R+ + ++  D +ARL G+ F ++L   +      +
Sbjct: 496 LDNFKVLNDTLGHHMGDLLLQQVAQRLQDCVRSADTVARLGGDEFVVMLEELDADPLLAA 555

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +    A  +  S+     +    +  + SIG   +     +  E+LK A+LAMY AK  
Sbjct: 556 TQAELVAKKVLGSLNKQFAMGNHNMHSSPSIGVTLFFQHNDSIEELLKRADLAMYQAKGA 615

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F        S+R  ++ DL  A++  +  L Y P++      + G+EAL++W 
Sbjct: 616 GRNTLRFFDPDMQAAASERADMEADLRRALQEEQFTLYYQPVVDQA-GTVTGVEALLRWL 674

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +S + F+ +AE+  +I  +  ++LE     +++W D +    + I +N++++  
Sbjct: 675 HPLRGMVSPAVFIPVAEQTGLILPLGQWVLEAACAQLVAWNDDSQTQKLSIAVNVSARQF 734

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +    +  L+  +  +P R+KL  +ES+++ + E + + +G LR IG+S +LDDFGT
Sbjct: 735 RHPDFSTHILDLLRTSGANPYRLKLELTESLLLTDFEEAVIKMGELRSIGVSFSLDDFGT 794

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P D +K + S +    +     AI R+I+ +AK+++  ++A+ +     
Sbjct: 795 GYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIARTILNLAKSLDLGVVAEGVETAGQ 854

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSI 949
              L R GC   Q      P+    +
Sbjct: 855 RDFLLREGCRAFQGYFFGRPVPVEQL 880



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIAT 436
           L  F V+Q           + +  +        +  +V+++    D        +  +A 
Sbjct: 176 LADFGVVQEFTEERDARDALQTQLDFIHKITSRAPGMVYEFQMWPDGQFKFPFVSAGVAQ 235

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + G++           +  IH  D         +     +     EFR R A     W++
Sbjct: 236 LFGVSMEQAREDANALMRRIHREDVPRIIKTSLASRDTLQ-PWNCEFRTRDAGADMRWLL 294

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               P    +G +L + G   DIT QKK+L  + 
Sbjct: 295 GTSVPEIKPDGSVL-FTGSITDITPQKKALAQLQ 327



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A  + ++ +    +   L    +    W      DRV  +  +A + GL    +      
Sbjct: 65  ALEHANETMNRQVKLHELTESVAKVGHWVSYPDDDRVQLSRGLALMAGLGDVPLATNQSL 124

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H  D    +         R      EFR  + + +  W   R+     + G +L 
Sbjct: 125 WGS-VHPEDLPRLKEA-----RIRMDGSVVEFRWLSKEGRTLWARSRMHRQM-AEGRVLA 177

Query: 512 YIGIANDITEQKKSLEGILCN 532
             G+  + TE++ + + +   
Sbjct: 178 DFGVVQEFTEERDARDALQTQ 198


>gi|254788102|ref|YP_003075531.1| motility regulator [Teredinibacter turnerae T7901]
 gi|237685689|gb|ACR12953.1| motility regulator [Teredinibacter turnerae T7901]
          Length = 897

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 147/561 (26%), Positives = 255/561 (45%), Gaps = 9/561 (1%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           IQ V +    ++      ++ S         +   D   +            GL    ++
Sbjct: 321 IQDVTSRLQRAEAHLETSQQLSALTHLVPVAILRVDTHWNCAFANDRWYEFSGLTFDEIN 380

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                W+  +H +D       L S +      L+ E R+ +   Q  W  +  + + +  
Sbjct: 381 QT--GWINALHRDDVKTTLEELRSALKV-GHNLKREVRLVSPVGQVRWTEMNTQVLFDER 437

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G IL ++    DITE+    E +   A  D+LTG+ NR  F DRL      S   +    
Sbjct: 438 GAILGFLATFADITERYIHQERLRHVAEYDSLTGLANRYLFQDRLKQAFFNSER-EGSEV 496

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            VM +D+D +K +ND LG AVGD +L  +  R+  +L+  D +AR  G+ F I+L     
Sbjct: 497 VVMFLDLDGFKIVNDSLGHAVGDKLLKKVGERLLNILRRVDTVARFGGDEFVILLNPHEK 556

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            L +A+ A  + +S+A    +   EI VT+SIG +  T+   +  +++K A+ A+Y AK 
Sbjct: 557 QLDVAEVASKIIQSLAQTYQIDGNEICVTSSIGISGGTAKNSSPEKLMKQADAALYLAKS 616

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N+ + F  +  +  +    +      A+ +   +L Y P+  +  +EIVG EALI++
Sbjct: 617 EGKNNFQLFNEALDKEAKKRVFMARQTRSALRHKRFFLEYQPLANISRKEIVGFEALIRF 676

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASK 803
                  +   +F+ I EE   I     ++++   R +  W  Q   P   F+ IN++ K
Sbjct: 677 KDEMGRCVYPGDFIAILEESGAIVEAGNWVIDEACRQLSQWHAQQLFPLDGFMSINVSPK 736

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             LD+ L + +     +    P  + +  +ESV++  P + +  + +L++ GI   LDDF
Sbjct: 737 QFLDDSLLDSILGSCERHCIRPQCLTIEVTESVLIDKPAKIQRTMSQLKEQGIRFALDDF 796

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   PFD +K + S +      E    I +SII + K++  T+ A+ +  E
Sbjct: 797 GTGYSSLTYLQQYPFDHLKIDKSFVANLGSDENSAKITKSIIALGKSMGLTVTAEGVADE 856

Query: 922 IDIKELTRMGCDYIQDSHVAS 942
             +  L+  G DY Q   +  
Sbjct: 857 PTLNILSAYGADYYQGYFLGR 877


>gi|83643630|ref|YP_432065.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631673|gb|ABC27640.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 994

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 150/562 (26%), Positives = 270/562 (48%), Gaps = 13/562 (2%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           S  E+  LA      +   V+  D     +T     + I G  +  + G           
Sbjct: 424 SRDEQLLLAKSVFDHTPQGVFALDTEFRFLTVNNAFSQITGYETEEVIGSSLEDFSQ-AP 482

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           N R  F  I D      RGR Q E   +    +F+   ++I  + N+ G    Y G+ +D
Sbjct: 483 NKRQVFSRIRDELF--LRGRWQGELYEKRKSGEFYCQWLQITSIINTEGATTHYAGLFSD 540

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE+K++ E +      D LTG+ NR  F +RL  IL     +  L   ++++++D++++
Sbjct: 541 LTERKQADEKLHYLLNYDELTGLANRMLFRERLDKIL-RKVREQGLSINMLLLNVDRFRQ 599

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +N+ LG   GD++L  +  RI +       LARL  + F  IL    +  +I+ F   + 
Sbjct: 600 VNESLGQDRGDELLKQVATRISQTASHAHTLARLGSDEFA-ILTPAKSRSQISRFCEQLL 658

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P N+   E  V+ SIG      +      +++ A +A+  AK+ GGN  E +   
Sbjct: 659 DELKAPFNIDGHEFYVSTSIGVTQAPDNGWEIQTLMQQANMAVRQAKYLGGNTYEFYSRM 718

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                R+ +  + +L  A++N ++ + + P + L    I G+EAL +W HP+ G I+ S+
Sbjct: 719 LRSMSRMRLDVETELRRAIQNQQMEVFFQPKLSLDSGRITGVEALARWRHPQRGLIAPSD 778

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +   ML        +W  +     I + +N+++  L  + L + ++ 
Sbjct: 779 FVPMAEESGLITELGEQMLGAACAQAAAWSREGLD-NIQVSVNLSAHQLRQSNLPQMVRK 837

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T   P  + L  +ES +M N  R++ +L RLR++G+ +T+DDFGT  S LSYL   
Sbjct: 838 VLQDTELPPHLLDLELTESTLMENMSRTQFMLSRLREMGVRITVDDFGTGYSSLSYLKRF 897

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K +   +  +       AI R++I + K++   +IA+ +  E  ++ L   GC  
Sbjct: 898 PLNALKIDRMFIKDAHHNADDAAITRAVIMLGKSLNLEVIAEGVEHEGHLQFLRESGCHT 957

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   +A PLG   +  LL+E+
Sbjct: 958 VQGYLIAEPLGAEQMASLLREQ 979



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/380 (16%), Positives = 112/380 (29%), Gaps = 51/380 (13%)

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISI--------DFGFLSKLVNLPSGEL 250
           A+ L  F+T+ ++   S        +    LG I              L +  +      
Sbjct: 50  AAALLFFITMGFVATASPYHAVAPLIGLATLGAICAVLLAVFGSRAQALLQDESANLPRN 109

Query: 251 LIWRACSEIALSSSLIIFL---FMYLHWNRWHAKVGYITFSGIACIAIL-FCMSFYYPMV 306
           +   +   + LS+++   L     Y+      + +   T +      +L F +  +    
Sbjct: 110 VANLSRLYVLLSAAIATVLGPVAAYIILELPSSWLDSATIAQFVAAGLLSFFLGIWRTPF 169

Query: 307 TASIARITLASIVLYY---------TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357
               A   L   VL                   +  Y  A L   A        + +   
Sbjct: 170 IILSAMPLLWLSVLLSGRSPLPTELMTNAAILSVFLYPLAALWYLASSRYLNQNLQMQGL 229

Query: 358 ITKRLDNDIIQPALVGGLVLIVIL------------------IGFTVIQHVLATGYFSQ- 398
           I    +       L   L   +                    I     +   A    SQ 
Sbjct: 230 IAYLDNARSASEQLNQQLAYEITRREEIEHELRETQKELENAICERTDELSEANRILSQQ 289

Query: 399 ---------GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     +     R S A+  +G  +WDWDI R+ +  +       G    S    +
Sbjct: 290 IKLRKNISDALMKSQTRLSQAIEATGLALWDWDIPRNSLYQS-FFHDAFGPREMSATAFV 348

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508
                 IH +DR   R  +   +       + ++RV  A + + W+    +P+  +  G 
Sbjct: 349 ERMHGLIHTDDRPRIRKEMMLCLKGLSNTYRVQYRVTTAKDAWIWVEDCGKPVSFDKLGR 408

Query: 509 ILRYIGIANDITEQKKSLEG 528
           I R IG   DI+++K   E 
Sbjct: 409 ITRMIGSRRDISKEKSRDEQ 428


>gi|294629517|ref|ZP_06708077.1| developmental regulator MorA [Streptomyces sp. e14]
 gi|292832850|gb|EFF91199.1| developmental regulator MorA [Streptomyces sp. e14]
          Length = 626

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/587 (23%), Positives = 268/587 (45%), Gaps = 34/587 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A   +   +   D     V+       +LG A G + G     L  +  +       
Sbjct: 42  FRSAFDAAPLAMAVVDREGLVVSANDTFGELLGTAPGELAGRPAADLVDLASD--ARTWQ 99

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS------NSNG--DILRYIGIAND 518
              + +  R+ RL+     + AD +  W+ + + P+       +++G       +    D
Sbjct: 100 AYRAVLRGRQARLRCVRHFKHADGRSRWVQVTLAPLPAEHPDTDASGPESTAGVLLSLAD 159

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKY 576
           I+ +++    +      D +T +PNR  F +RL+  L+          R  +  +D+D +
Sbjct: 160 ISVRRELQSRLRHLRMHDPVTRLPNRTLFFERLSAALETESYERGGTGRIGLCYLDLDGF 219

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLSGNRFGIILISENNSLK 629
           K +ND LG  +GD +L ++ RR+                +ARL G+ F +++     + +
Sbjct: 220 KAVNDTLGHRIGDRLLAAVARRLQGCADEAGYGRASAPLVARLGGDEFALLVEDSTGTEQ 279

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +AD A ++  ++  P  +  R ++V+ASIG     ++  +++ +++ A+  +Y AK  G 
Sbjct: 280 LADLAESVLTALQEPFEVSGRRLSVSASIGVVERQAAGTSATALMQAADTTLYWAKADGK 339

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F       R  R  +   L  AVE  E  L Y P++ + D  + G+EAL++W HP
Sbjct: 340 ARWTLFDPERNATRMTRQALVSTLRAAVERGEFTLEYQPLVAMADGRLRGVEALVRWRHP 399

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLL 806
           ++G ++ + F+ +AEE   I  +  ++L    R    W+ D  + PPIF+ +N+A + + 
Sbjct: 400 QFGVLTPNRFITLAEEDGSIVPLGRWILATACRQARRWQLDHPDEPPIFVSVNVAVRQVW 459

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D++L   +  ++++T  +P  ++L  +ES VMG+  R    L  L  +G+++ +DDFGT 
Sbjct: 460 DSDLVADVAEVLAETGLAPRLLQLELTESAVMGSAGRPLEALRALSDMGVTIAIDDFGTG 519

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG------------STEKRIAILRSIIPMAKNIETTII 914
            S L+YL  +P   +K +GS + G             +     I+ ++I +A  +  T+ 
Sbjct: 520 YSNLAYLSRLPVSALKLDGSFVRGFQPGRQTGEAELPSPADEVIVEAMIQLAHRLGLTVT 579

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           A+ +        L R+GCD  Q    + P+  + I +LL       +
Sbjct: 580 AECVETSDQASRLRRIGCDTGQGWLYSRPVSPDRISELLDGHACGRR 626


>gi|228909573|ref|ZP_04073396.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228849862|gb|EEM94693.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 883

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/725 (21%), Positives = 314/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETITLLRLLYRIPILLIAIAGSIS 227

Query: 304 ---------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                     +V   I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFIVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNTKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + + +     + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSKSNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  N+  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHINAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|152977488|ref|YP_001377005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152026240|gb|ABS24010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Bacillus cytotoxicus NVH 391-98]
          Length = 906

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 168/855 (19%), Positives = 344/855 (40%), Gaps = 34/855 (3%)

Query: 118 FSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWE 177
           F   L    I+        +  R+   DS +F   ++P      +  I        +L+E
Sbjct: 68  FWMLLTFGSILYFIGDIIVAYQRLILHDSAIF---VDPSDFFYLLCLI---IFVAAFLYE 121

Query: 178 PNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAM-------AWVVLG 230
                D      L+  I      + A F   +Y++   ++ I             + +  
Sbjct: 122 L--LYDRNIWEQLFI-ICDVCIVVTAQFTLSYYLLIEQAIHIIATTYLNIIVQLMYPMAN 178

Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH--WNRWHAKVGYITFS 288
            + +  G       L      +    +   +  + I  ++ YL          +    + 
Sbjct: 179 LLFLLIGISLLFRPLSLLSKQVSIFLATSVIGYASIDSIYAYLKYFTAEHSGFIIAPLYQ 238

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
               + ++ C+             +T       +     Y  +      VL+  A+  I 
Sbjct: 239 FFLMLIVIACVLHTKEAEHTEQVLLTPQIGEAIHLSL-PYLSVIALSTFVLIERAFSPIL 297

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ---GIFSDGE 405
           +  + +       + + +++      L+  +        Q  L T    Q    ++   +
Sbjct: 298 VIGLIVTF-FFVLIRHILVRRQNKELLLTQMRFNQHLEEQIELRTQDLVQQKDALYRSKK 356

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                     D ++  D+  + +       T+LG  +  +      +   ++  D     
Sbjct: 357 MFESLYEHHPDPIFTLDLHGNFLNVNHAGITLLGYQTNELLNQP--YYSLVYEKDLKKII 414

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    R   +  E R    +   +++ +   P+      I     +  DITE K+ 
Sbjct: 415 DAFHHVK--RGNSISLEIRAYHKNRDIYFLHVTAVPIILKE-HIPGVYLMIKDITESKQQ 471

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A+ D LT + NR+SF  +L   +  +         V+ +D+D++K IND LG 
Sbjct: 472 QEQINFLAYHDTLTELSNRRSFHKQLEEAIVRAKITKQ-PFAVLFLDLDRFKIINDTLGH 530

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L+++ +R+ ++      LARL+G+ F +++ +  ++ ++   A  +  ++  P 
Sbjct: 531 RIGDLLLIAIAKRLKQISNPNVKLARLAGDEFTLLIENIKHTAEVQTVADHILAALNEPF 590

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +    + +++SIG A +  +      +L++A++AMY  K++G N    +    +     
Sbjct: 591 QIENHHLQISSSIGIAIYPEAGEDPMSILQHADMAMYETKNKGKNGSSIYTQELYEKMER 650

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++D  LA+ N++ ++ Y P + +  ++IVG EALI+W+HP  GNIS  EF+ I EE
Sbjct: 651 KSRIEKDFPLALANNQFFISYQPQVDIRTKKIVGAEALIRWNHPILGNISPCEFIPIVEE 710

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  +  +ML+   + +  W        + I +N+++K+   + L E +  ++ +   
Sbjct: 711 TPQIIPLGHWMLKESCKQLKYWHK-LGYADLKISVNLSAKEFQQDNLIENILTILKEVQV 769

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + L  +E + M N + + L L +L++ GI  ++DDFGT  S L+YL   P D +K 
Sbjct: 770 EPRFLILELTERIAMINEKETLLKLKKLKEHGIQTSIDDFGTGYSSLAYLSLFPIDALKV 829

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                      E+  AI+ +I+ +A  +  +++A+ I  E     L    C Y+Q  + +
Sbjct: 830 PREFTQLADQREEERAIISTILSLANTLNLSVVAEGIETEKQFDFLQANNCRYMQGYYFS 889

Query: 942 SPLGFNSILKLLKER 956
            PL     L  L++ 
Sbjct: 890 KPLTSKQFLNFLQKH 904


>gi|332533546|ref|ZP_08409408.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036948|gb|EGI73407.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 794

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/762 (20%), Positives = 310/762 (40%), Gaps = 38/762 (4%)

Query: 216 SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
                   M +   G +           N  +  +LI    +   ++   II  +     
Sbjct: 48  QYYAILQQMPFSSTGNMLTSLLLTLFFWNDVNHYVLISWISALWCIAIINIILWYKSKSI 107

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            +      +        +++   +          ++      +++         G   + 
Sbjct: 108 EKNTLIKKHAAEWLTVILSLAAILHITMANYLFGLSDEQGRLLIICIIISFASVGAWMFS 167

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
              +   AW+ IF   + + +              +    +++   +        +    
Sbjct: 168 FLPIAGLAWVGIFTLGLLIGIPYHFWGHYWYFALIVTFFGLILASTVIVFS---RMFLSN 224

Query: 396 FSQGIFSDGERQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  + +RQ + +        + D +W+ D   +   T+  +A  L +    + G  
Sbjct: 225 LEAETKIEHQRQVVGMLLNDFEKNASDWLWETDEKGNLQHTSLHLAKALNVTIQELEGK- 283

Query: 450 RNWLPYI-----HINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            N+   I         ++ F+ +   L + + ++  ++  E           W  I  +P
Sbjct: 284 -NFSSIIFSLCKSATSKELFQDLNTKLCTPLPFKNMQIPVEVAKCHK-----WWAITAKP 337

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + N NG  L + G+ +DITE K   + +   A  D LTG+ NR  F   +  + +  A  
Sbjct: 338 LVNFNGLFLGWRGVISDITEIKLREQEMEFLANADPLTGLANRHKFNQFIKQVFEKKA-- 395

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +   T+ ++D+D +K IND LG  VGD +L  + +R+   +K   ++ARL G+ F I+ 
Sbjct: 396 -SANCTLFLMDLDNFKIINDSLGHIVGDQLLQEMAKRLSAAIKPNGLVARLGGDEFAIVY 454

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +     + A  +  ++  P  + E +I + ASIG AS     +T+ ++ K A++A+
Sbjct: 455 QYTLDKTSAQEHAEQILDTLKKPWYVHEYKIEMYASIGIASTPKDTMTAHDLFKFADMAL 514

Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G +    F      +   ++ +  D+   + N+E  + Y P + L    + G E
Sbjct: 515 YSAKETGKSKCSFFEQYMEENGKSKLALLSDIKKGLINNEFTIYYQPQVNLKSGSLNGFE 574

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G I+   F+ +AEE  +I  +  F+L +  +D  SW        + + +N
Sbjct: 575 ALVRWNHPIKGTIAPDTFIPLAEESGLINKLGQFILNQACKDASSWPKH-----LKVSVN 629

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++     N L E +   +  +  +  ++++  +ESV++ N E    +L  LR+ G+ + 
Sbjct: 630 VSALQFTKNTLVEDIFNALKSSNLASEQLEIELTESVMINNYEYVVKVLNNLRERGVKVA 689

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIA 915
           LDDFGT  S LSYL  IP D +K + S +         +  AI++SII +A+ +      
Sbjct: 690 LDDFGTGYSSLSYLQEIPLDKLKIDRSFVEKLNVVDNTQATAIVKSIISLAQALNFETTI 749

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + I     I     MG  Y Q  + + P+   S + L+    
Sbjct: 750 EGIESANQIAIFKGMGSTYGQGYYYSKPIDSASTISLINNWN 791


>gi|322421187|ref|YP_004200410.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320127574|gb|ADW15134.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 748

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 137/616 (22%), Positives = 276/616 (44%), Gaps = 32/616 (5%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH--VLATGYFSQGIFSDGERQSLA 410
              +A+T+ L   ++  A +  L     +  F  ++   + A     + +    E+    
Sbjct: 122 VATLAVTRSLAPALMVTASLLFLGAAAAVFAFFRLRTVPLRAIEDAYRILKQSEEKYRSV 181

Query: 411 VLGSGDIVWDW-DIVRDRVT----TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                + +  +  +  +         P  A + G     +   IR     I         
Sbjct: 182 YESLNEGLVLYKSVPGEDDFLVADINPVAAAVFGFDRDDIGKSIRKVQGGI----FAPAW 237

Query: 466 TILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA-NDITEQK 523
             ++  +       L+ E      +       +   PM    G+    +     D+TE+K
Sbjct: 238 AAVNGALLGEGDAGLELEL-----EGAGRTFTLNAFPM----GE--GMVATLLEDVTEKK 286

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E +   A+ D+LTG+ NR   L+R+   + ++   + LR   + +D++ +K IND +
Sbjct: 287 RTAEQLEQLAYYDSLTGLLNRSMLLNRMDQTIGIAQR-EGLRMATLFLDLNGFKVINDTM 345

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ + RR+   ++  D LARL G+ F ++   +         A  + + I  
Sbjct: 346 GHEAGDQILIEVARRLKGSVRKRDTLARLGGDEFVMVATYDK-EENAGYIAQNLLRRITP 404

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSF 700
              +  RE+ +  SIG + +     +   +LKNA++AMY+ K +       F     +  
Sbjct: 405 VYEVCGREVYLGGSIGISVYPDDGDSPETLLKNADIAMYNTKKKQSGVDFCFYSAQLNER 464

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ ++ DL +AVE  E +L Y PI+      +  +EAL++W  P+ G +    F+ +
Sbjct: 465 LHERMRLEFDLRMAVEREEFFLEYQPIVNARSGRLTAVEALVRWMSPEKGRVMPDSFIPL 524

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L+   R +  W+D     P+ + +NI+ +  +  ++C+ ++ ++ +
Sbjct: 525 AEETGIILPLGEWVLKTACRKLKQWQDAGCR-PLRMSVNISGRQFMSGDICQAVEEVLEQ 583

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P+ ++L  +E+ ++ N E +   L  L+ + +++ +DDFGT  S L YL   P D 
Sbjct: 584 TGVDPNHLELELTETCLIQNVEETIRKLCHLKGLSVAIGIDDFGTGYSSLQYLKNFPLDH 643

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AI+ +II +AK +E  +IA+ +      + L   GCD +Q  
Sbjct: 644 LKIDRGFIRNVCELPDERAIVDAIIGIAKAMELHVIAEGVETREQTEYLAMRGCDELQGY 703

Query: 939 HVASPLGFNSILKLLK 954
           +   PL    +L++L+
Sbjct: 704 YFHRPLTEERLLEVLR 719


>gi|239831061|ref|ZP_04679390.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239823328|gb|EEQ94896.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 707

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 137/582 (23%), Positives = 244/582 (41%), Gaps = 22/582 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT--TPDIATILGLA 441
             ++Q        ++            V      V+  D+  +          +   G  
Sbjct: 123 LAIVQDRTEVTEANRQASHAQTLLDSLVNNLPLGVFVKDMQDNGRYVLFNQAASVASGQP 182

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ---FHWMIIR 498
                G     L               D     RR  L  E +V   D        +   
Sbjct: 183 IEEALGATDLDLF---PKREAAVILEQDRMAMRRRDVLSVERKVERKDGTSRTMRIIRCS 239

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+     +    IG+  D+TE+++  E +   A  D+LTG+PNR  F   + ++L   
Sbjct: 240 IPPVEGD--EPRYLIGLLEDVTERREIEERMAHIAMHDSLTGLPNRAYFAHHVESLLK-- 295

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              D+    +  +DID +K IND +G   GD +L  + RR+ ++    + +ARL G+ F 
Sbjct: 296 KGGDSEPFALFYLDIDHFKNINDSIGHQAGDQLLQEVARRLKQITTPDEFIARLGGDEFA 355

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+  S     +IA FA  +  +      L+     VT S+G +           +++NA+
Sbjct: 356 IVYRSGT-LGQIAMFADRVLSAFQDSFKLVGNSEFVTCSMGISQAPLHGDNPDALMRNAD 414

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+Y +K  G      ++ S   +      +  +L  A+ + +  L Y PI  L    I 
Sbjct: 415 LALYASKSGGRRTFRFYQHSLRLAAEKRHVMTGELRQALLDEQFELHYQPIFNLESGRIS 474

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G +S +EF+ +AEE  +I  I  ++L    R+ + W +      I +
Sbjct: 475 GFEALIRWRHPERGMVSPAEFIPLAEETGLIGPIGDWVLRAACREAVLWPE-----DIKV 529

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++        L + +   +     SP R++L  +ESV + N + +  LL  LR++G+
Sbjct: 530 SVNLSPVQFSQTTLLQSVTDALEAARLSPDRLELEITESVFLSNSKNNIELLFELRRLGV 589

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +         
Sbjct: 590 RIAMDDFGTGYSSLSYLRSFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGAGFNIVTT 649

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +     ++ L       +Q      P+    +   ++ R
Sbjct: 650 AEGVETAQQLERLKSERFGEVQGFLTGRPMPAGDVHSFIQNR 691


>gi|114800534|ref|YP_760140.1| putative sensory box-containing diguanylate cyclase [Hyphomonas
           neptunium ATCC 15444]
 gi|114740708|gb|ABI78833.1| putative sensory box-containing diguanylate cyclase [Hyphomonas
           neptunium ATCC 15444]
          Length = 792

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 152/743 (20%), Positives = 307/743 (41%), Gaps = 31/743 (4%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW---NRWHAKV 282
            ++L  +      L+  +N      L   +   + ++         +L      R + + 
Sbjct: 45  VIILSNVLNIIAILAIFLNYGQTHFLYAWSVCGLIINIGAWFKYRSFLRINPQRRSNRRA 104

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASI-ARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
                    C  +L+ ++    + TA +   + +  I     +   +   +    A+  I
Sbjct: 105 IADFTRVAICNGLLWGLAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAAIYYI 164

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               L     + L       + + ++   L+  LV +       V Q++         I 
Sbjct: 165 VPSGLGLATALMLQTGPKYSILSILMVYYLMVLLVAVAWTHRQFVEQYL-----GRAAIQ 219

Query: 402 SDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIRNWLPY 455
              E   L +      + D +W  D         P +A       ++  +          
Sbjct: 220 EQSELIGLLLRDFEESTSDSLWQTDEAGVLQEL-PIVAEATDSLWSANEVLRRGAPLTSI 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H  +    R  L + +  +         ++  + + HW  +  +P+    G    + G+
Sbjct: 279 FHPGE---ARDALQAALEGQVPFRDQVVPIKDGNGEMHWWSVTGKPVI-ERGQFFGFRGV 334

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           A+D+T+ KK  + I   A  D LTG+PNR +  +RL ++L         R  ++++D+D 
Sbjct: 335 ASDVTQSKKIEDRIAHMAHYDGLTGLPNRITMQERLESLLRRQPPPPACR-ALLMMDLDS 393

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG   GD++L  +  RI  L +  D +ARL G+ F +++    N   +  F  
Sbjct: 394 FKWVNDTLGHPAGDELLRQVAARIRALSEPGDFVARLGGDEFAMVVER-RNVHDLHGFLD 452

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
                ++   ++       +ASIG   +  +   S  M + A+LA+Y AKH G      F
Sbjct: 453 QFASEMSELYDVWGSTANSSASIGVRLFDPAIHDSRTMFRQADLALYQAKHLGKAKWCMF 512

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R+ I+E+L  A++ +EL + + PI+     + V  E L++W HP+ G + 
Sbjct: 513 DDELEQRAQARLDIQEELQRAIDRNELRIHFQPIVDATTHKTVACETLLRWQHPERGLVY 572

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+  AEE  +I  +  +++     +     +      + I +NI+   +    L   
Sbjct: 573 PGEFIEHAEENGLITRMGEWVIRAALAEATRLPEH-----VRICVNISPLQVHSASLAST 627

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I+ +   PSR++L  +E+ +M N E +   L +LR +G+ + LDDFGT  S L++L
Sbjct: 628 IVNAIAASNMDPSRLELEITETALMSNTEFTLRRLHQLRSLGVRIALDDFGTGFSSLNHL 687

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + + ++         AI +S++ +A+++     A+ +   +  + L+++G
Sbjct: 688 RSFPFDRIKIDRTFVSDIETRADSQAITKSMVSLARSLGMQCTAEGVETSLQAEYLSKLG 747

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C+ +Q    +       +  L++
Sbjct: 748 CEELQGYFFSHAHPLEQLGHLVQ 770


>gi|82703414|ref|YP_412980.1| response regulator receiver /GGDEF/PAS/PAC domain-containing protein
            [Nitrosospira multiformis ATCC 25196]
 gi|82411479|gb|ABB75588.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosospira multiformis ATCC
            25196]
          Length = 1025

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 224/437 (51%), Gaps = 6/437 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++K + E +   A  D LT +PNR  FLDRL   ++ +  +   R  V+  D+D++K +N
Sbjct: 575  DRKTTEERLTYLAQFDPLTELPNRSLFLDRLRQAMEHAHRNRR-RVGVVFADLDRFKIVN 633

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D +G + GD++L+ + +R+ + ++  D +ARL G+ F +IL            A  +  +
Sbjct: 634  DTMGHSTGDELLIHVAKRLQQCVRSCDTVARLGGDEFALILSDLVQPEDATLIAEKVISA 693

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
            + +P  L  +EI V+AS+G + +      +  +L+NA+ AM+ AK +G    + +  +++
Sbjct: 694  LQVPFELETQEIYVSASLGISIYPGDGTDADSLLRNADTAMFQAKEQGPAIYQFYLPQMN 753

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+ I+  L  A+   E  L Y P   L++ EI G EAL++W HP  G +   +F+
Sbjct: 754  ERAVARLKIETQLRGALARREFVLHYQPKASLINGEITGFEALLRWQHPAHGLVPPLQFI 813

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             + E+  +I A+  ++++ +   I  W+ Q  +    I IN++++     +L   +   +
Sbjct: 814  SVLEDTGLIVAVGEWVVKTVCEQIREWQGQGLVLH-PIAINLSARQFQQQDLDSIIGETL 872

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
              T   P  ++   +ESV+M   E +   L  L+  G+ +++DDFGT  S L+YL   P 
Sbjct: 873  RATNIDPRLLEFELTESVLMKEAEMAANALQNLKAFGVQISMDDFGTGYSSLAYLKRFPL 932

Query: 879  DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + + +    +      I  ++I +A ++   ++A+ +     ++ L R GCD +Q
Sbjct: 933  DVLKIDRAFIRDVTTDPDDATITVAMIKLAHSLGLKVVAEGVETRAQLEFLIRHGCDEMQ 992

Query: 937  DSHVASPLGFNSILKLL 953
              + + PL      K+L
Sbjct: 993  GYYFSQPLPLEGASKVL 1009



 Score = 95.0 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 2/149 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
              +    + +  +  R +LA   +   +W+W+   + +     +  I G+A GS     
Sbjct: 277 RAESNRRERVLLEERTRLALATEAAAIGIWEWNTATNEMIWNDRMYEIYGIAPGS-RITY 335

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             W  Y H +D       L+       GR+Q +FR+         + I      ++N D 
Sbjct: 336 DIWKSYTHPDDLPQQEMHLERV-SAENGRVQLDFRILREHKTVRHLHIAKALKWSTNPDE 394

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNL 538
           LR +G A DIT++K++   I  +A Q  L
Sbjct: 395 LRIVGTAIDITKRKQTDFAIQEHAMQQGL 423


>gi|222111912|ref|YP_002554176.1| diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
 gi|221731356|gb|ACM34176.1| diguanylate cyclase/phosphodiesterase [Acidovorax ebreus TPSY]
          Length = 894

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 138/615 (22%), Positives = 258/615 (41%), Gaps = 34/615 (5%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           A+                    V+  G  V  ++       + +         A+     
Sbjct: 280 ALAGWRQEAQTVLFGALLFAATVVAAGSVVALYLRRMHSARRVVARSKATLDQALEAMVS 339

Query: 417 IVWDWDIVRDRVTTTPDIATILGL---ASGSMHGPIRNWLPYIH--------INDRDNFR 465
                D  R  V        +        G      R     +H           R    
Sbjct: 340 GFVLLDAQRCVVQWNLRFEEMFPWLVSTIGEGVPFRRVLETTVHYHLPGASAEEKRAWVE 399

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L      R G  Q        +  +  +  R      ++G     + I +D+T+ + +
Sbjct: 400 ERLQQQCTPRGGVEQL-----LPNGHYVQITERAT----ADG---GVVIIYHDVTDLRLA 447

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   AF D LTG+PNR+  LD+L      +         V+ ID+D +K +ND LG 
Sbjct: 448 TAEVEHLAFYDQLTGLPNRRLLLDQLGDASASAVRT-GTHGAVLFIDLDHFKTLNDTLGH 506

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKS 640
            +GD +L  + RR+   ++  DI+ARL G+ F ++L            ++   A  + + 
Sbjct: 507 EIGDYLLQQVARRLESGVRVGDIVARLGGDEFVVLLAGLATEAERAREQVRAVAEKVVQL 566

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P  +  +    + S+G A + S   T++E+LK A++AMY  K + GN V  F     
Sbjct: 567 LAQPYPIAGQSYHGSCSVGAALFGSVLQTAAEVLKQADIAMYQVKAQRGNAVCFFDPRMQ 626

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S R  ++ DL  A+   +  L   P     D  +VG+EAL++W HP+ G +  +EF+
Sbjct: 627 VALSARARLESDLQDALREGQFLLHLQPQF-TRDGAVVGVEALLRWQHPERGLVLPAEFI 685

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  +  ++L      +  W+    +  + + +N++++     +  E +  L+
Sbjct: 686 GVAEDSELIVPLGRWVLASACELLARWQASPRLRELSLSVNVSARQFRSPDFVEQLSQLL 745

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++     R++L  +ES+V+ + E S   + +LR  G+   +DDFGT  S L+YL  +P 
Sbjct: 746 LRSGAPAHRLELELTESLVLEDVEDSIAKMHQLRTKGVRFAVDDFGTGYSSLAYLTRLPL 805

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +    E R    ++++I+ MA+N++  ++A+ +  E     L   GCD  Q
Sbjct: 806 HRLKIDRTFVHHLGESRSDDVVVQTILGMARNLDLEVVAEGVETEEQRSFLALHGCDVYQ 865

Query: 937 DSHVASPLGFNSILK 951
              +A P+   ++  
Sbjct: 866 GYLLAHPMPVEALQA 880


>gi|54293866|ref|YP_126281.1| hypothetical protein lpl0922 [Legionella pneumophila str. Lens]
 gi|53753698|emb|CAH15156.1| hypothetical protein lpl0922 [Legionella pneumophila str. Lens]
          Length = 771

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 138/576 (23%), Positives = 264/576 (45%), Gaps = 16/576 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSM 445
           +        +    +   +  A+  S   V   D+ ++    +        I G      
Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQYA 255

Query: 446 HGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G     L    +   +       +             E      + +F+W  I + P+ 
Sbjct: 256 LGKGLFTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S G +  YI I ND+T+++   + +L  A  D+LT +PNR   +DR+   +  +  +  
Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                + +D+D++K  ND LG ++GD +L ++  R+  + +  D +ARL G+ F I+L  
Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +N L+    A  + K I  PI + +  + +T S+G + +         ++K+A+L+MYH
Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +   ++    + + +   L  A++N EL+LVY P+I L    +VG EAL
Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W     G +S ++F+ +AEE  MI  +  + +++    +  W        + I +N++
Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKA-GFKNLSIAVNLS 608

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L E +  ++  +      ++L  +ES+++ + +     +  L+ +G  L +D
Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P D +K + S +T     +   AI ++II +  ++   ++A+ + 
Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVE 728

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     +T  GCDY Q     +P    +IL+ LK 
Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764


>gi|88800852|ref|ZP_01116407.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88776425|gb|EAR07645.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 857

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 135/546 (24%), Positives = 240/546 (43%), Gaps = 15/546 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +    +           L+      P         +    R          V   +  L 
Sbjct: 310 LDGVPLLANQAFLKSYRLSPDDYLKPEHYNVIFDSLSPATRQLLEEADQEAVESNQAVLL 369

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E   R  D     + +R   +    G     + +  DITE+K   E I   A+ D LT 
Sbjct: 370 PEISWRLPDGHHLSLEMRKLSIQ-YKGQPA-ILSVGVDITERKLHQEHIQHLAYHDALTD 427

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  FLDRL   L  +         ++ +D+D +K IND  G   GD VL  +  R+ 
Sbjct: 428 LPNRHLFLDRLDQALLRTQRSKQY-GALIFVDLDNFKTINDTKGHLAGDAVLADVAERLK 486

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVT 655
              +  D +ARL G+ F I +     + +       D ++ +  ++  P      ++ V+
Sbjct: 487 HAFREVDTVARLGGDEFVICMTDLGRTEQEAYDIAHDRSVKLMDAMKRPFQTQGDQLIVS 546

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713
           AS+G A +    +T+SE+L +A++AMY AK  G N +  F+     +   +++  ED   
Sbjct: 547 ASLGLAFFHDHSLTASELLSHADMAMYRAKETGKNRIILFQEEMAEASERLLELKEDSRN 606

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   E +LV+ P +   D +I+G EAL++W HP  G +S  EF+ + E+  M+  +   
Sbjct: 607 ALRRDEFHLVFQPQVDARDRKILGAEALLRWTHPSRGMVSPGEFIPLLEDGEMMPLVGQK 666

Query: 774 MLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++E  A  +  WR +        + +N++ +     +    ++ ++ +       I L  
Sbjct: 667 VIELAAAQLADWRKEGLIREDFRLSLNVSPQQFRQADFVSTVRTVLDEHDLPAYLIDLEI 726

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E +++ N + +   +  LR++GI  ++DDFGT  S L+YL  +P D +K + S +    
Sbjct: 727 TEGMIIDNIDHTVAAMKELREMGIHFSIDDFGTGYSNLNYLKRLPLDVLKVDQSFVRDIE 786

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 AI+R+II MA  ++   +A+ +  E  +  L  +GC   Q    + PL      
Sbjct: 787 HDANDTAIVRTIIAMADQLKLNTVAEGVETEDQLTLLRELGCQVFQGYLYSPPLKNVEFA 846

Query: 951 KLLKER 956
            LLK +
Sbjct: 847 SLLKTQ 852


>gi|329851787|ref|ZP_08266468.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328839636|gb|EGF89209.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 700

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 142/550 (25%), Positives = 268/550 (48%), Gaps = 17/550 (3%)

Query: 410 AVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            V     +V+  D      V        +LGL+   + G           +D   FR   
Sbjct: 150 IVESIPSMVFVKDAQDGRFVLLNKAGEDLLGLSRHDLIGKTD--FDLFDEDDALRFRDAD 207

Query: 469 DSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            + V   +   +  E  +         +  +   + +++G     +GI+ D+TE+ +  E
Sbjct: 208 RAVVASGKLVTIDKE-PLATPSG-VRQLRTQKIGVPDADGKPRYLLGISEDVTEKLRVEE 265

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D LT +PNR  F + L   +  SA D++    ++++D+D++K +ND LG  V
Sbjct: 266 RSRHLALHDVLTDLPNRLKFQNILDQQMVRSAGDND--FALLLLDLDRFKAVNDSLGHHV 323

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +  R+  L+   DI+ARL G+ FG+I   + N    +  A  +  ++  P N+
Sbjct: 324 GDHLLQQVAGRMRLLMGDNDIVARLGGDEFGVIHKGDGNGDSASWLAQKLIDTLCQPFNI 383

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVSSFRSDRV 705
               +++  S+G A       T+  ++K A+LA+Y AK  G        F +      + 
Sbjct: 384 DGHNVSIGCSVGIALRALHGHTADSLMKRADLALYAAKATGKGDYAWFQFAMEEKADHQR 443

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +++E+L +A+E  +L + Y PI+      I+  EAL++W HP  G IS  EF+ IAE   
Sbjct: 444 ILREELTVALEKHQLSIDYQPIVCTRSGRIICCEALLRWRHPTRGLISPVEFIPIAESSG 503

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I++I  ++L    R+   W        I + +N++ +      L   +   + ++  +P
Sbjct: 504 LIESIGQWVLHTACREAADWPS-----DIGLAVNLSPRQFTGFGLAADVTRALDQSHLAP 558

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +R++L  +ES+ + + + +  +L +L+++GI + LDDFGT  S L+YL    FD +K + 
Sbjct: 559 NRLELEITESIFLTDSQENVRILNQLKQLGIRIALDDFGTGYSSLAYLSCFSFDKLKIDR 618

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G   + + +AI+R++I + K+   T+ A+ +  E ++  +TR GCD +Q   +  P
Sbjct: 619 SFIKGMTTSPENLAIVRAVIGLGKSFGATVTAEGVETEAELACITREGCDQVQGYLLGKP 678

Query: 944 LGFNSILKLL 953
           +    + ++L
Sbjct: 679 MAPEILREIL 688


>gi|188581437|ref|YP_001924882.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179344935|gb|ACB80347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 777

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/648 (24%), Positives = 268/648 (41%), Gaps = 37/648 (5%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
           I       + +  +     A L +   +   +      +       +D     L      
Sbjct: 161 IFGRAIATLQWQRLGALVPARLGVTGLLAGILGRSDRAVFELASPRSDGTVLHLKVEARA 220

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIAT 436
           I  LI   +             I +           +   +W  D      V       T
Sbjct: 221 IGDLIAVAMTD--------IGDIKAREASFRFLFENNPLPMWLVDGETARFVAVNEAAIT 272

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G            +L     +        L         R     R   AD     + 
Sbjct: 273 HYGFDRE-------AFLARRLPD--------LSEAGAPSLSRDGGLHRHLRADGSVIEVT 317

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +  R ++   G     +G A D+TEQ+++   I   A  D LTG+PNR  F  RL   + 
Sbjct: 318 LFERSLAFE-GRPA-VLGAAIDVTEQRRAEARITHMAHHDALTGLPNRALFAVRLAEAIA 375

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A    +   ++ +D+DK+K +ND LG   GD +L  +  RI   L+  D++ARL G+ 
Sbjct: 376 EHART-GVAAALLCLDLDKFKFVNDTLGHPAGDALLRQVAERITACLRREDLVARLGGDE 434

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++L +  ++  +   A  + ++++ PI L +RE  +  S+GFA        S  +L+N
Sbjct: 435 FAVLLRN-PDAATVDTIAGRIIEALSRPIRLGDRECQIGVSVGFARLPEHGTESDILLRN 493

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LA+Y AK  GG+    F  +       R   + DL  A    EL L Y P++ +    
Sbjct: 494 ADLALYRAKAEGGSVAHGFEAAMDSWARSRRRRETDLHEAFARGELALAYQPVLGVRSRA 553

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G EAL++W H   G I  S+F+ +AEE  +I  I  ++L +   +   W D     PI
Sbjct: 554 ILGFEALLRWQHSVEGAIPPSDFVPLAEETGLIVPIGAWVLRQACAEASLWAD-----PI 608

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++     D  L   ++  ++ +  +P R++L  +ESV++   E +   L  LR++
Sbjct: 609 RVAVNLSPVQFRDPGLVATVREALALSGLAPQRLELEVTESVLLAASEANVATLHALRQL 668

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912
           G+ + +DDFGT    LSYL   PFDT+K + S +   G      AI+R++I +  ++   
Sbjct: 669 GVRIAMDDFGTGYCSLSYLQRFPFDTIKIDRSFVNRLGDDPHSTAIVRAVIGLGASLGIV 728

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            +A+ +  E    +L   GC  +Q      P       +L++    L 
Sbjct: 729 TVAEGVETEAQFAQLRAEGCGEVQGYLFGRPAPAAEARRLIRREPDLA 776


>gi|315123462|ref|YP_004065468.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315017222|gb|ADT70559.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 990

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 125/562 (22%), Positives = 246/562 (43%), Gaps = 17/562 (3%)

Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            E+  L       + + +   +  +  V   P    I G +   + G   ++L       
Sbjct: 419 EEKLHLSSRVFRDTHEGIIITNADKVIVDVNPAFCHITGYSHDEVIGRNPSFLNS----- 473

Query: 461 RDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                +   +        G  Q E      D + +  ++ I  + + + ++  Y+GI  D
Sbjct: 474 GKQTESFYKNIWKQLSLYGHWQGEVWNCKKDGELYAELLNISVLKD-DNNVTFYLGIFTD 532

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+ K+  E +   A  D LT +PNR    DRL+  +      +N    V+ +D+D +K 
Sbjct: 533 ITQAKRQQEQLSRIAHYDLLTNLPNRVLLADRLSQTMLQCRRHNN-SLAVVFLDLDGFKH 591

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G  +GD +L++L+ R+ + L+  D LAR+ G+ F  +L +  +          + 
Sbjct: 592 VNDSHGHDIGDKLLIALSIRLKDALREGDSLARIGGDEFVAVLTNLGSVADCVPVLERLL 651

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + A P+ + +  + V+ASIG   +    + + +++++A+ AMY AK  G N    F  S
Sbjct: 652 AAAAKPVTVNDIVLNVSASIGVTIYPEDNLDAKQLMRHADQAMYIAKQMGKNRYHLFDTS 711

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              + ++       +  A+ N+   L Y P + +    ++G+EALI+  HP+ G +S  E
Sbjct: 712 QGDTVKLQQTGISLIREALANNWFVLYYQPKVDMRTGSMIGVEALIRVQHPERGLLSPIE 771

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E   ++  +  +++      I  W+       I + +N+A+  L   E    +  
Sbjct: 772 FLPVIENNALMIDVGEWVINAALSQINHWQILTPSLNIKVSVNVAAVQLQQPEFTARLTE 831

Query: 817 LISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           L+          ++L   E+  + +       +   + +G+  +LDDFGT  S L+YL  
Sbjct: 832 LLLAHPQVDARNLELEVLETSALNDVAHVSKTMQDCKALGVEFSLDDFGTGYSSLTYLRR 891

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +         +AI++ +I +A + + ++IA+ +        L  +GC 
Sbjct: 892 LPASLIKIDQSFVRDMLEDSNDLAIVKGVIALANSFKRSVIAEGVETPEHAATLMLLGCY 951

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q   +A P+    I   L E
Sbjct: 952 LAQGYGIAKPMKAEDIPIWLDE 973



 Score = 91.6 bits (226), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 10/196 (5%)

Query: 339 LLIPAW----ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
             I  W    +L+    I +       L + +I       L L   +      Q   A  
Sbjct: 234 YPIMGWQDNSMLLLGIAIAVAFTFLTTLSSYLITRLRASHLKLEKKV-----EQRTHALQ 288

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +     R  L+    G   W+WDI  + +  +     ++      +      +L 
Sbjct: 289 NNIKALTDTERRLLLSQKVGGIATWEWDIKTNIIRFSEHGIRLITGNVKQLEMTKNEYLA 348

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH NDR N  + ++  +   +     + R+        W   +   + +++G  +  +G
Sbjct: 349 SIHPNDRANIVSDINQCIDAAKE-YNVDHRIITKRGNVRWFNTKGTLVRDNSGSAITMLG 407

Query: 515 IANDITEQKKSLEGIL 530
           ++ DITE+K   E + 
Sbjct: 408 VSVDITERKLFEEKLH 423


>gi|239931087|ref|ZP_04688040.1| hypothetical protein SghaA1_22900 [Streptomyces ghanaensis ATCC
           14672]
          Length = 565

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/554 (23%), Positives = 264/554 (47%), Gaps = 27/554 (4%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     V+    +AT+LG    ++ G +   L  +  +            +  R+ +L+ 
Sbjct: 5   DREGMVVSANGSLATLLGSDPDTLTGAVAADLVDLSSD--ARIWHAYREVLRGRQAKLRC 62

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R++  +    W+ + + P+   +      +    D++ +++    +      D +T +
Sbjct: 63  TRRLKHPEGHAPWVRVTVAPLPADD---EGVLLSVTDLSTRRELQARLRHARLHDPVTRL 119

Query: 542 PNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           PNR  FL+RLT  L+          R  +  +D+D +K IND LG  +GD +L ++  R+
Sbjct: 120 PNRTLFLERLTAALEAESYERSGTGRIGLCHVDLDGFKAINDTLGHRMGDRLLAAVAERL 179

Query: 600 GELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               +          ++ARL G+ F +++     + ++AD A ++  +I +P +L  + +
Sbjct: 180 TRCARESGRSRAGAPLVARLGGDEFALLVEDSTGTEQLADLAESVLGAIQVPFDLCGQRL 239

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710
           +V+ASIG     ++  T + +++ A+  +Y AK  G      F          R  +   
Sbjct: 240 SVSASIGVVERHTAGTTPTALMQAADTTLYWAKADGRARWTLFDPERNAHRVTRQALASA 299

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  E  L Y P++ + D+ + G+EAL++W+HP++G ++ + F+ +AEE   I  +
Sbjct: 300 LRPAIERGEFALEYQPLVGMEDDRVHGVEALVRWNHPRFGTLTPNRFIGLAEEDGSIVPL 359

Query: 771 NLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L    R    W+++    PPIF+ +N+A + + D++L   +  +++ T  +P  ++
Sbjct: 360 GRWVLRTACRQARRWQEEHPEEPPIFVSVNVAVRQIRDSDLVADVAGILADTGLAPRLLQ 419

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES VMG+  R   +L  L  +G+ + +DDFGT  S L+ L  +P   +K +G+ + 
Sbjct: 420 LELTESAVMGSSGRPLQVLRELSDMGVRIAIDDFGTGYSNLANLSRLPVSVLKLDGAFVR 479

Query: 890 G----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           G                 I+ +++ +A  +  T+ A+ +        L R+GCD  Q   
Sbjct: 480 GFPYEERSAAPPNPADEVIVEAMVQLAHRLGLTVTAECVETSAQATRLRRIGCDTGQGWL 539

Query: 940 VASPLGFNSILKLL 953
            + P+  + I +LL
Sbjct: 540 YSRPVPPDRISELL 553


>gi|209528168|ref|ZP_03276640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Arthrospira maxima CS-328]
 gi|209491401|gb|EDZ91784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Arthrospira maxima CS-328]
          Length = 1190

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 155/582 (26%), Positives = 289/582 (49%), Gaps = 15/582 (2%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            +V L+    +Q       F +      E+       + + ++  D+    ++  P +A I
Sbjct: 605  LVKLVSSVAMQL---GSVFQRK--QAEEKYRDIFENALEGIFQIDLQGKYISANPALAQI 659

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            LG  S        + +  ++  D + +   ++  +  R     +E +V   D +  W+  
Sbjct: 660  LGYDSQQQLLVRGSQIKNVY-ADPETYNRFIN-LLQTRGSVSNFEAQVYRRDGEAIWIWQ 717

Query: 498  RIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              R +  + +  +L Y G   +IT  K++   +  +A  D+LT + NR  FLD+L   + 
Sbjct: 718  NARAIYSDRHNRVLYYEGSIMEITHLKETEAKLRHSASHDSLTDLWNRAFFLDKLDDSIR 777

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
               T DN +  ++ +D+D ++ IND LG A+GD +L+ +++R+ + +    ILARL G+ 
Sbjct: 778  KCKTLDNYQFAILFLDLDGFQFINDSLGHAIGDQLLIEVSKRLTDSVDSH-ILARLGGDE 836

Query: 617  FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            F I+L +  +  +  D A  +++S+ +PI L + +I   ASIG     S+  +S E+L++
Sbjct: 837  FTILLENIRDIQEAIDVAERIQESLKLPIFLEKNQIFTGASIGIVEGNSNYQSSPEVLRD 896

Query: 677  AELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEE 734
            A+ AMY AK +G      F  +   +    +  +  L LA++  +  L Y PII L    
Sbjct: 897  ADTAMYRAKRQGKGCYVVFDSTMRTNALRRLYLQTQLRLALQEQQFELNYQPIIELSTGT 956

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPP 793
            I G EAL++WDHP+ G IS +EF+ IAEE  +I  I  ++L +    +  W+++      
Sbjct: 957  IAGFEALLRWDHPQEGLISPAEFIPIAEEAGLIVDIGEWVLRQACFQLSEWKEKFAVYSN 1016

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + + +N++S+   + +L   +  ++ +T  + S +KL  +E+ +M +PE +   L +L++
Sbjct: 1017 LMMSVNLSSQQFTN-DLSRRISKILVETGVAGSELKLEITETAIMNDPELAIATLQQLKQ 1075

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
              I + +DDFGT    L YL   P D +K + S ++     E +  I+R I+ +A++++ 
Sbjct: 1076 QQIKICIDDFGTGYCSLGYLHKFPVDILKIDRSFVSQIPEGEDKREIVRVIVALAESLKM 1135

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              IA+ I     +  L    C Y Q      PL   ++  LL
Sbjct: 1136 DAIAEGIETAEQLHHLQNFKCKYGQGYFFFRPLNCQAVEALL 1177



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 56/162 (34%), Gaps = 3/162 (1%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
              LV+I+  +   + Q +         +  +       +  +       D+        
Sbjct: 303 TACLVVIIRPLTNQISQEIWERHKAEAELIKEKNFTQTLLEANPAFFIVLDVEGKVKFMN 362

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           P +   LG     + G   +   ++   +  +   + +  +  RR  ++ E  +   D++
Sbjct: 363 PSMLNTLGYKQEEVEGMNYS-ATFVPKEEGKSAPWVFELMI-NRRLPIRTEETMITKDDR 420

Query: 492 FHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCN 532
              +    R + N    +   ++G   DIT++K++ E +   
Sbjct: 421 EIIVEWYGRAVFNKETDEYEYFVGAGLDITDRKRADEELQLL 462


>gi|240140674|ref|YP_002965154.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens AM1]
 gi|240010651|gb|ACS41877.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS/PAC sensor [Methylobacterium extorquens AM1]
          Length = 700

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/575 (24%), Positives = 257/575 (44%), Gaps = 23/575 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449
           A       +     R   A+      +  +D  +  +        I GL   ++H  +  
Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLLVWNRRYLGIFGLPDDAVHVGMGQ 183

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505
           R  +  +           +D+     R  L  +         AD +   +  R  PM++ 
Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVTHR--PMADG 241

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    ++    DITE++++   I+  A  D LT +PNR    +     L    T     
Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAP 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND  G AVGD +L ++  R+   ++  D++ARL G+ F  +L    
Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684
           ++   A  A  + +++A P  L    + +  S G A            +LK A+LA+Y A
Sbjct: 357 DAAAAAALAERLIETVAAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G   V  F         +R+ ++ +L  A+      L Y P++ L D  I G+EALI
Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALTLDRFELHYQPLVDLSDNRITGMEALI 476

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S + F+ +AEE  +I  I  ++L +  RD + W  +     I + +N++ 
Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L      + +   ++ +    SR++L  +E+V++ + E +   L  LRK+G+ +++DD
Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S +SYL   PFD +K + S +     +    AI+R+I+ +  ++  T + + +  
Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVET 651

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           E  +  +   G   +Q    + P   + I  LL+ 
Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 55/159 (34%), Gaps = 19/159 (11%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E   +A     D +W  D        +P    +LG +   + G  R+ L      
Sbjct: 3   LNDLEELARIAF----DWLWATDAEDRFSYVSPGAERVLGRSPADLIGLTRSALVCEGEG 58

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D      +    +  RR      +  R  D    W  I  RP  +  GD L Y G+ +D+
Sbjct: 59  DS---LAVYRETITARRPYRDLTYVYRHPDGTPRWFEISGRPHFSPEGDFLGYHGVGSDV 115

Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           TEQ +     +E     + Q       NR+ F   L  +
Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146


>gi|302877347|ref|YP_003845911.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302580136|gb|ADL54147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 951

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 145/574 (25%), Positives = 261/574 (45%), Gaps = 18/574 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +    F +   +     ++A   + + +   D   + +          G +   + G  
Sbjct: 368 TVQDVTFREEAATQLRIAAVAFD-TQEAIMVTDKEANIIKVNHSFELTTGFSEQEVLGKN 426

Query: 450 RNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              L    H  D   F   +   +  R G    E   R  + + +   + I  + N + +
Sbjct: 427 PRLLGSGRHNQD---FYKSMWEVL-NRVGSWSGELWDRRKNGEIYPKWLTITAVKNRD-E 481

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I  Y+G+  DITE+KK+ E I   AF D LT +PNR+  LDR+   L LSA   N    +
Sbjct: 482 ISHYVGVFVDITERKKAEEEIHNLAFFDPLTQLPNRRLLLDRMRLALGLSARSKNF-GAL 540

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M ID+D +K +ND  G   GD +L+ ++ R+ + L+  D +AR  G+ F ++L S + + 
Sbjct: 541 MFIDLDHFKVLNDTKGHEYGDKMLIEVSHRLTQSLRDTDSVARFGGDEFVVLLESLSVNQ 600

Query: 629 KIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            IA       A  MR+S++    +       T SIG   +    I   E+LK A+LAMY 
Sbjct: 601 DIAVAQAGSIAEKMRESLSQTYIIESYAHESTPSIGVVLFNGDAIEIDELLKRADLAMYQ 660

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N V  F  +   +      ++  L  A+ NSE  L Y       + E++G E L
Sbjct: 661 AKESGRNTVRFFESAMQATLESRTLMERALRQALSNSEFELYYQVQTNQAN-ELLGAEVL 719

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W     G IS ++F+ +AE+  +I  I  ++LE     + +W     +  + + +NI+
Sbjct: 720 LRWHSQSLGPISPAQFIPLAEQTKLILPIGEWVLENACARLKAWETHPTLSKLRLAVNIS 779

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                  +    +QA ++ +  +P R++L  +E++V+ + + +   +  L+ +G+  ++D
Sbjct: 780 PVQFHQPDFVRQVQAALTDSGVNPRRLELELTENLVLEDVDEAIQKMSALKALGVRFSMD 839

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L Y+  +P D +K + S +           ++++I  MA+N    +IA+ + 
Sbjct: 840 DFGTGYSSLQYIKRLPIDQLKIDQSFVRDILTDPGDAMMVQTIAGMARNFGYEVIAEGVE 899

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +  L   GC+  Q    + P+       L+
Sbjct: 900 EHAQLLPLIERGCNTFQGYFFSRPVALAEFEHLI 933



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W+ D+   R+  + +I  +  +           +L  IH  DR+       + +  ++
Sbjct: 271 GSWELDLHSGRLNWSEEIFRLFEIDPAQFSPSHEAFLSIIHPEDREAVNQAYTNSLTNKQ 330

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                  R+  AD +  W+  R     +  G  +R  G   D+T ++++   +   A
Sbjct: 331 -SYHITHRLIMADGRVKWVEARGSNYFDPEGRAIRSAGTVQDVTFREEAATQLRIAA 386


>gi|221196784|ref|ZP_03569831.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD2M]
 gi|221203453|ref|ZP_03576472.1| PAS fold family protein [Burkholderia multivorans CGD2]
 gi|221177387|gb|EEE09815.1| PAS fold family protein [Burkholderia multivorans CGD2]
 gi|221183338|gb|EEE15738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD2M]
          Length = 749

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/567 (23%), Positives = 248/567 (43%), Gaps = 13/567 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452
             +Q +    E   L V    + +         + + P    +L  A G + G   +   
Sbjct: 181 RIAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELVGRRMSTVI 239

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509
           L  +  +              +      L Y      AD    W+     P+    +   
Sbjct: 240 LRKLSEDGTPIAPDRWPSRRALTSGTPVLDYTVGFGLADGDVIWVRGNAVPIVKPGDTQA 299

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTV 568
              +   +DI   +++ + +   A +D LTG+ NR+   DR+  +           R  +
Sbjct: 300 ASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFGGRDPAGGPARVAI 359

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+  +KK+ND  G   GD +L S+  R+   ++    L R+ G+ F I++   ++  
Sbjct: 360 LFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGDEFVILVDDCDDPE 419

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  +  +IA P  +   E  +  SIG +        ++ +++NA+ AMY AK RG
Sbjct: 420 ALAALAREVIDAIAKPFAVANNEYWLGVSIGISIAPRDGDDAATLMRNADSAMYDAKQRG 479

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            NH   F        +    I++ L  A+ ++ L L Y P++       VG EAL++W  
Sbjct: 480 RNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTGRTVGAEALLRWTS 539

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +   
Sbjct: 540 PELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQFH 598

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E +   +++T   P  ++L  +E V+M +      +L  L ++ + +++DDFGT 
Sbjct: 599 D-GLVESVNRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTEMNVRISVDDFGTG 657

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  E   
Sbjct: 658 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGMKVTAEGVETEAQS 717

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
             L ++GCD  Q    + PL      +
Sbjct: 718 WFLQQIGCDMQQGYLFSRPLDPVDYAR 744


>gi|328545051|ref|YP_004305160.1| Ammonium transporter [polymorphum gilvum SL003B-26A1]
 gi|326414793|gb|ADZ71856.1| Ammonium transporter, putative [Polymorphum gilvum SL003B-26A1]
          Length = 1049

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 142/581 (24%), Positives = 261/581 (44%), Gaps = 22/581 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +   L+     + +            +   +  A+  +        +    V     +  
Sbjct: 434 MFNALMDSIQNEELAQIQAADAARSREEAERLSALANATFEAIVISVDGRIVDGNAALED 493

Query: 437 ILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           +LGL    + G  + ++L     +DR+     LD    + R     E  V   D     +
Sbjct: 494 LLGLPITRLKGRDLSHFLSL---DDREELLKHLDEAESHPR-----ELTVLHQDGTPVPV 545

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +R R + +  G   R   +  D+ E+KK+   IL  A  D LT +PNR  F   L   +
Sbjct: 546 EMRTRMI-SYRGVPTRVTAVI-DLRERKKAEAQILHLAQHDPLTDLPNRAVFNKELEAAI 603

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           D +         +++ID+D++K IND+ G  VGD V+     R+ +  +  D +ARL G+
Sbjct: 604 DEARAAV-ASSALLLIDLDRFKDINDLHGHLVGDRVIRVTAERLRQGSRRTDTVARLGGD 662

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEML 674
            F +I  + +   +  D A  +   ++ PI+     I    ASIG +   +    +  ++
Sbjct: 663 EFAVIQRNIDFVTQAEDMAHRLLDRLSAPIDCGNGLILRAGASIGISVIPAQGGGAETIV 722

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA++A+Y AKHRG N    F+       R    ++ DL +A+E  +  L + P +++ D
Sbjct: 723 SNADIALYEAKHRGRNAYCLFKDGMGDLMRRRRELEADLDIALEKGQFELHFQPRLQISD 782

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I   EALI+W+HP  G I+ ++F+ +AE    I  I  ++L+           +A   
Sbjct: 783 ARIASYEALIRWNHPDKGLINPADFIPVAEGSGQILGIGKWVLDEALTVAARHLGEA--- 839

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N++     +N   + ++  I ++   PSR++L  +E++++ +  R+  +L +L+
Sbjct: 840 --RISVNVSPLQFRENGFADAVEEAIDRSGLPPSRLELEITENLLIEDDARALSILRKLK 897

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
             GI + LDDFG   S L YL   PFD +K + S + G        AI+ ++  +   + 
Sbjct: 898 AKGIRIALDDFGVGYSSLGYLSRFPFDAIKIDRSFVVGIHTNANALAIVETVARLGHALG 957

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             ++A+ I  E +++ +   GCD IQ   V  P    ++ +
Sbjct: 958 MEVVAEGIEREEELRIMIDKGCDEIQGFLVGRPKPIGALER 998


>gi|254000402|ref|YP_003052465.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253987081|gb|ACT51938.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 722

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/581 (26%), Positives = 268/581 (46%), Gaps = 9/581 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                LA    +Q + +   R   A+ G+G  VWDWD+  +RVT +    T+LG     +
Sbjct: 139 TAARWLAMALQNQALAASNARWKFALDGAGHGVWDWDLGSNRVTFSTQWKTMLGYDEQDI 198

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               ++WL  +H  D  +F+T++D+        L  E+R+    N++ W++ +   M+  
Sbjct: 199 GDDCQDWLSRVHPADLAHFKTLIDAVKSGEAQSLICEYRLLTKTNEWCWILSKGMIMAGK 258

Query: 506 NGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + +   R IG   DIT +K+S   I   A  D LTG+PN+      L+  +       N 
Sbjct: 259 DHEGPRRMIGTNTDITARKQSERLIWQQANFDALTGLPNKHLLNQLLSERI-HGDHGANN 317

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +M++D+D +K +ND LG   GD +L+    RI   +   DI+AR  G+ F II+ + 
Sbjct: 318 MVALMIVDLDNFKDVNDALGHIYGDMLLMEAASRIQAAVLPADIVAREGGDEF-IIVTTA 376

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  ++ + A  + + +     LL   +   ASIG A +    ++ + ++K A+ A+Y A
Sbjct: 377 ASLAELENTATNVLRVLGQSYELLSEVVFCAASIGIALYPQHTLSPNVLMKYADQALYLA 436

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K         +             +  +L  AVE     + Y PI RL   E V  EAL+
Sbjct: 437 KSTARGQYAFYSHELEEEALKRSKLTTELRFAVEEQAFEVFYQPIFRLDTRETVKAEALV 496

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S +EF+ +AE   +I AI  ++ +  A    + R     P   I +N + 
Sbjct: 497 RWKHPERGYVSPAEFIPLAESTGLINAIGDWVFKEAAMFAKALRGSYA-PDFQISVNKSP 555

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              L     +   A ++        I +  +E +++   +     + ++R  G+S++LDD
Sbjct: 556 MQFLTVGKLDW-AAFLTNLDLPGKAISVEITEGLLLQQSQEVNARIKKIRDTGMSISLDD 614

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL     D +K + S +     + K  A+ ++II MA  +   +IA+ I  
Sbjct: 615 FGTGYSSLSYLSSYEIDYLKIDRSFIINLTTSSKNQALCKAIITMAHELGYQVIAEGIET 674

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           E  ++ L+ +GCD  Q   ++ PL     +  L       +
Sbjct: 675 EQQLQLLSALGCDLGQGYFISRPLPQQDFVAWLASSLSTTQ 715


>gi|218532082|ref|YP_002422898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218524385|gb|ACK84970.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 700

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/575 (24%), Positives = 256/575 (44%), Gaps = 23/575 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-- 449
           A       +     R   A+      +  +D  +  +        I GL   ++H  +  
Sbjct: 124 ALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLLVWNRRYLGIFGLPDDAVHVGMGQ 183

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNS 505
           R  +  +           +D+     R  L  +         AD +   +  R  PM++ 
Sbjct: 184 RAIIEMLVARGCYKRGATVDAISEGTRTSLSGDGSKSVLRELADGRVIAVTHR--PMADG 241

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G    ++    DITE++++   I+  A  D LT +PNR    +     L    T     
Sbjct: 242 GG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTHLREVGAEWLAALRTAAEAP 297

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND  G AVGD +L ++  R+   ++  D++ARL G+ F  +L    
Sbjct: 298 LAVLCLDLDRFKPVNDSFGHAVGDALLRAVADRLRGHVRSHDVVARLGGDEFA-VLSRVE 356

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684
           ++   A  A  + +++  P  L    + +  S G A            +LK A+LA+Y A
Sbjct: 357 DAAAAAALAERLIETVGAPYTLDGITVEIGMSAGIALAEGDVPHDIERLLKEADLALYEA 416

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G   V  F         +R+ ++ +L  A+      L Y P++ L D  I G+EALI
Sbjct: 417 KTEGRGTVRLFEPQMDETLRERLGLERELREALTLDRFELHYQPLVNLSDNRITGMEALI 476

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S + F+ +AEE  +I  I  ++L +  RD + W  +     I + +N++ 
Sbjct: 477 RWHHPERGLVSPAVFIPLAEETGLIVPIGEWVLRQACRDAVDWPGE-----ISVAVNVSP 531

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L      + +   ++ +    SR++L  +E+V++ + E +   L  LRK+G+ +++DD
Sbjct: 532 LQLRHRGFIQSVLGALAASGLKASRLELEITENVLLDDTEANLETLHTLRKLGVRISMDD 591

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S +SYL   PFD +K + S +     +    AI+R+I+ +  ++  T + + +  
Sbjct: 592 FGTGYSSISYLRRFPFDKIKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVET 651

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           E  +  +   G   +Q    + P   + I  LL+ 
Sbjct: 652 EPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 686



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 19/159 (11%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E   +A     D +W  D        +P    +LG +   + G  R+ L      
Sbjct: 3   LNDLEELARIAF----DWLWATDPEDRFSYVSPGAERVLGRSPADLIGLTRSALVC---E 55

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                  +    +  RR      +  R  D    W  I  RP  +  GD L Y G+ +D+
Sbjct: 56  GEGESLAVYRETITARRPFRDLTYVYRHPDGTPRWFEISGRPHFSPEGDFLGYHGVGSDV 115

Query: 520 TEQKK----SLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           TEQ +     +E     + Q       NR+ F   L  +
Sbjct: 116 TEQHRTRCALVEAHAELSEQ-------NRR-FDAALENM 146


>gi|296504250|ref|YP_003665950.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296325302|gb|ADH08230.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 906

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/808 (19%), Positives = 323/808 (39%), Gaps = 64/808 (7%)

Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
             ++   +    +           W    +I      L+ +  L     L  +    I  
Sbjct: 104 VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 161

Query: 262 SSSLIIFLF---------------------MYLHWNRWHAKVGYITFSGIACIAILFCMS 300
            S   +FL                         +  R      ++  S      I F ++
Sbjct: 162 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 221

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFI 352
            +    T  + R+     +L               R   L+                  I
Sbjct: 222 NHLSTETIILLRLLYRIPILLIAIAGSISEDHNSHRNYFLVNPIIGKKALVVFPYLAVAI 281

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391
            +   + ++  +  +        + ++I      +Q                        
Sbjct: 282 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTS 341

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              + S+ +    ++         D ++  D+    +      + +LG  +  + G    
Sbjct: 342 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC- 400

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I   D+      L+         LQ   +    D   +++ + I P+   +G I  
Sbjct: 401 -FSIILDEDKHKLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 456

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DIT  KK  E I   AF D +T I NR  F  +L  ++  +   ++    ++ +
Sbjct: 457 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYL 515

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   + 
Sbjct: 516 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 575

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689
                + K +     + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK    
Sbjct: 576 QLCNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 635

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             + +  ++     R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ 
Sbjct: 636 VSIYNDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 695

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF+ IAEE   I +I  + LE+  + +  W        + I +N+++K+    +
Sbjct: 696 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 754

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + + + ++ T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S 
Sbjct: 755 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 814

Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L
Sbjct: 815 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 874

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C +IQ  + + P+  ++  +LL+ 
Sbjct: 875 QKNKCQFIQGYYYSKPIHIHAFTELLEN 902


>gi|307331393|ref|ZP_07610512.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
 gi|306882952|gb|EFN14019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
          Length = 656

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/559 (24%), Positives = 257/559 (45%), Gaps = 17/559 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A   +   +   D         P +  +LG     +       L  +  +       
Sbjct: 99  YRAAFNVARLAMAVVDREGRVRDANPALGALLGTDPAVLTTRSAADLANLRED--PRTWK 156

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +G R  RL+   R+   D    W  I I P  +S       +    DI++Q+   
Sbjct: 157 EYRDVLGGRLARLRRTRRLLRPDGHALWAEITIEPAPDSR----TLLLSMADISDQRDLQ 212

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL--RPTVMVIDIDKYKKINDVLG 584
             +      D +T +PNR  F +R+T+ L+ +  D     R  +  +D+D +K +ND LG
Sbjct: 213 GRLRHLQMHDPVTRLPNRSLFFERMTSALEAATYDHGGTGRIGLCYLDLDGFKAVNDTLG 272

Query: 585 IAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             VGD +L ++ +R+ E       ++ARL G+ F +++ +   + ++ D A ++  ++  
Sbjct: 273 HRVGDRLLGAVAQRLTEYAAPGGHLVARLGGDEFALLVRNSTGTEQLCDLARSLLAALQE 332

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P ++  + ++V+ASIG     ++   ++ +++ A+  +Y AK  G      F        
Sbjct: 333 PFDVGGQRLSVSASIGVVERPAAGTHTTWLMQAADTTLYWAKEDGKARWTLFDPERNAHR 392

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  AVE  E  L Y P++ L D  + G+EAL++WDHP++G +S + F+ +A
Sbjct: 393 MTRQALSSTLRPAVERDEFVLDYQPLVGLGDGVVRGVEALVRWDHPQFGRLSPNRFIPLA 452

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +  ++L    R    W+      P+ + +N+A + + D++L   +  ++++T
Sbjct: 453 EENGAIVPLGRWVLRTACRQARVWQLANPTHPLVVSVNVAVRQVWDSDLVADVGTILAET 512

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +ES VMG+  R    L RL  +G+ + +DDFGT  S L+YL  +P  T+
Sbjct: 513 GLPPHLLQLELTESAVMGSTGRPLQALQRLSDMGVPIAIDDFGTGYSNLAYLSRLPVSTL 572

Query: 882 KFNGSLMTG------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           K +GS + G             I+ +++ +A  +  T+ A+ +      + L R+GCD  
Sbjct: 573 KLDGSFVQGFRAEEHPNPADETIVEALVQLAHRLGLTVTAECVESAEQAERLRRIGCDTG 632

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + P+  + I  ++ 
Sbjct: 633 QGWFYSRPVPPDRIQTMIT 651


>gi|326796306|ref|YP_004314126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326547070|gb|ADZ92290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 836

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 122/581 (20%), Positives = 268/581 (46%), Gaps = 16/581 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI--------LG 439
           + V      ++ +     R    V  S D++  +D     +   P +  +        LG
Sbjct: 248 RDVTEKKRSAEQMRQSESRFRSLVENSPDLIARFDDHCRLLYANPVLERLSGTPFIHFLG 307

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           L+   +   I   L  +           +   +      ++ E  + +     + + + +
Sbjct: 308 LSFTDIEKHIYTKLEEVATLAESPIDESMRQVLKT-GTSVEIEREIPSTSGPMNCI-VSL 365

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P  N   +++  + +  D++E K+  E +   ++ D+LTG+PNR +FL+ +   L  ++
Sbjct: 366 TPEFNDRDELVSVLAVCKDMSEVKRYQEQVRYLSYHDSLTGLPNRATFLNDVRKRLISNS 425

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               ++  ++V  +D +K +ND LG   GD +L S++ R+ ++L    I+ARL G+ F  
Sbjct: 426 KASAMKLGLLVFGLDHFKGVNDSLGYEYGDLILKSISNRLRDILPKNAIIARLGGDEFAA 485

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L +  +  +    A  +   +++P+ +  +E+ ++ S G   +         +++ A+ 
Sbjct: 486 MLPTIPDREEFVCMATNISGELSLPVLIGRKEMPISISTGACLYPDDAFELDSLVRYADS 545

Query: 680 AMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AKH     V  +         +R+ ++ DL  A++N E    Y P   L   E++G
Sbjct: 546 ALYAAKHEQRGSVRFYTPELTKQAQERLQMRNDLRRALKNKEFIPYYQPKFDLQTREVLG 605

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP+ G +   +F+ + EE+ +++ +++ ML+ +   +  W+ Q       I 
Sbjct: 606 AEALVRWNHPEKGLVPPFDFIPVLEEMGLVEEVDMMMLDMVCGQLEKWQ-QLTDTGGKIA 664

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N +       +L + +  +I     +P  I++  +E V++ + ++  L+    + +G S
Sbjct: 665 VNFSGLQFKYEKLLDKVVDIIESHKLTPKAIQIEVTEGVLLEHHDQLPLIFRDFKALGFS 724

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S L YL   P DT+K + S +    +      ++++I+ MA+N++  ++A
Sbjct: 725 IALDDFGTGYSSLGYLSKYPIDTLKIDRSFVNNINKNEADDILIKTIVSMAQNLKMDVVA 784

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKE 955
           + +  +     L  +G   +Q      P+   +     L++
Sbjct: 785 EGVETKPQADWLASIGVRIVQGYLFGRPMSATNFEAAFLQD 825



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               S D++  +D +  R+       T+ G+   ++ G        + +    ++     
Sbjct: 143 VAEHSPDVIIRYDCLGRRMYANKAFETVTGVEVKNVIGRTPKEYSGVGVA--ASYLQEFV 200

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + +         E      D       +   P  N + ++   I I  D+TE+K+S E +
Sbjct: 201 ADIVKTGEFKAGELNHSTPDGSRIIFDLHGIPELNKDEEVESVILIGRDVTEKKRSAEQM 260

Query: 530 LC 531
             
Sbjct: 261 RQ 262


>gi|261418728|ref|YP_003252410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|319765543|ref|YP_004131044.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
 gi|261375185|gb|ACX77928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC61]
 gi|317110409|gb|ADU92901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/616 (22%), Positives = 272/616 (44%), Gaps = 26/616 (4%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH----VLATGYFSQGIFS 402
             +          + L     Q       + +   + + +  H      A   + + + S
Sbjct: 213 AVVGIDFDAKTYEQHLQRGRQQAMWTMMAMFLASAVAYLLALHHQMERKALAVYKKTLAS 272

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           +  R       + + +  +      V        +LG +   +       L         
Sbjct: 273 NEHRLRRLAEMTMEGLIVY-AHGKVVEVNEAACRLLGYSESELIHLPIGDL--------- 322

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                +     +     ++E  +R  D       I +R   +  G+ +  +    D+TEQ
Sbjct: 323 VVDGSMKLNRPHEEPE-RFEIELRRKDGTAFPAEI-VRRRYDYEGEKV-TVAAVRDLTEQ 379

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K++ E +   A  D LTG+PN+++    +   L  +    +    V+ +++   K IND 
Sbjct: 380 KQNEERMRYIANHDELTGLPNKEAMYKAVERCLAEAKQHRH-EMAVIFLEVSGMKTINDF 438

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G AVGD+VL+ L +   E  K    + R SGN F  ++ +  +  K  + A  + ++  
Sbjct: 439 YGYAVGDEVLLHLAQEWKE--KQGMAIGRWSGNEFIAVVSNSTH-QKAEEMAKQLIEAAD 495

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSF 700
            PI +   E+ VT +IG + +      +  +++ A++A Y A  K        +  ++  
Sbjct: 496 EPIVVNGMELYVTVNIGISVYPKDGEDAKTLIRKADIARYEARKKAASDFLFFTEPMAIR 555

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +++ ++ DL  A+EN E  L Y P IRL D +++G+EALI+W HP+ G +S S F+ +
Sbjct: 556 LHEKMAMERDLRRALENEEFELYYQPQIRLHDRQVIGMEALIRWRHPEKGMVSPSLFIPV 615

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  IN +++           D+   P + + IN++  +       + +  L++ 
Sbjct: 616 AEQTGMIIPINEWVIRTACEQTKQLLDRF--PDLSVSINLSPYEFESRRFVDKLARLLAD 673

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L  +E + M + ER+  +L +L+ +G+++++DDFGT  S LSYL  +P D 
Sbjct: 674 AGLPPHHLDLEITERMTM-DTERALDILSKLKGLGVTISMDDFGTGYSSLSYLTDLPIDR 732

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K + S +     K+  IL +II +  NI   ++A+ +  E +   L    CD  Q  + 
Sbjct: 733 LKIDRSFVQHIQGKKDVILPAIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYF 792

Query: 941 ASPLGFNSILKLLKER 956
           + PL ++ +++ L E+
Sbjct: 793 SPPLPYDELVRFLNEQ 808


>gi|77362381|ref|YP_341955.1| hypothetical protein PSHAb0472 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877292|emb|CAI89509.1| conserved protein of unknown function ; putative GGDEF domain
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 699

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 138/569 (24%), Positives = 264/569 (46%), Gaps = 21/569 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNW 452
              +      +          D+ +        +      ++   L        G   + 
Sbjct: 136 QAQEQAMFREKMLETIFEAIPDLFFVMQEDGKILDYQASSSSSSNLYALPQQFIGS--SM 193

Query: 453 LPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +  +D    FR  +   +  ++  + +++++  +    +    RI  +S       +
Sbjct: 194 FDLL-PDDVSSKFRKNISQALSQKQ-MVSFQYQLTMSQGAVY-FEARINHVS----QYQQ 246

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + I  DITEQ  + E I   A+ DNLT +PNR   LDRL+ +L  +  +      V+ I
Sbjct: 247 VMVIIRDITEQHDAEELIRKQAYYDNLTSLPNRFLALDRLSHMLFEAQRNKG-HVAVLFI 305

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +KK+ND  G  +GD +L+    R+ ++++  D + RL G+ F ++L   N      
Sbjct: 306 DLDNFKKVNDSFGYELGDKLLIKSAARLQQVIRKEDTIGRLGGDEFIVLLRGINCHYNAI 365

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D    + K+   P  +  RE+ +T SIG A +  +  T+S++L+NA+ AMY AK  G N 
Sbjct: 366 DITEKLLKNFTSPFKIEGRELVLTMSIGVAMYPENGDTASDLLRNADTAMYQAKALGRNT 425

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F        +  +  +E +  A++ +E  L Y P + + ++ + G EAL++W +P  
Sbjct: 426 YSFFTPQMNVVIQRRLAIEEQMHGALQRNEFELHYQPQLDVKNKHVTGAEALLRWYNPVL 485

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ----ANMPPIFILINIASKDL 805
           GNI   EF+ IAE   +I +I  F++++  + +  W++Q           + +N++    
Sbjct: 486 GNIPPDEFIPIAEHNGLIISIGKFVIKQALQLLKKWQNQCLNKGQHHKYTMAVNLSPSQF 545

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D  L   ++  +S+       ++L  +E V+M         L  + K+GI L++DDFGT
Sbjct: 546 RDTALLSFIKDTLSELDVKAKYLELEITEGVLMNAKLNINDTLQEITKLGIKLSMDDFGT 605

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PF+ +K +   + G T K+    ++++ I M+ ++  T++A+ +  +  
Sbjct: 606 GYSSLSYLRQYPFNVLKIDRMFINGITSKKEDCNLVKATIAMSHSLGLTVVAEGVETKEQ 665

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  L  + CD++Q  + + PL    +L  
Sbjct: 666 LVLLGELNCDFVQGYYFSKPLPEELLLDF 694



 Score = 42.2 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 4/113 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL- 479
           +D  R  +        + G       G        I  +D         +    +   + 
Sbjct: 35  YDEQRRVIYWNKGSEVLYGYTKSEATGKKIE--DLIIPSDLQEIVIAAHTHWITKGIEIP 92

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E  +R  +N    +        N  G I +   I  D+T+ K++ E  +  
Sbjct: 93  AAELTLRDKNNNDVSVFSSHVMFINQYG-IKQMYCIDIDLTDVKQAQEQAMFR 144


>gi|253996588|ref|YP_003048652.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983267|gb|ACT48125.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 447

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 137/449 (30%), Positives = 228/449 (50%), Gaps = 11/449 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT  K + + I   AF D LT +PNR+ F DRL   L  SA   N +  ++ ID+D 
Sbjct: 1   MADITSNKAAAKEIEVLAFYDPLTLLPNRRLFTDRLNHALASSARSQN-KGALLFIDLDN 59

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKI 630
           +K +ND LG AVGD +L+ +  R+   ++  D +ARL G+ F + L       +  + K 
Sbjct: 60  FKNLNDSLGHAVGDMLLLQVAERLNNCVREGDTVARLGGDEFVVTLEDLSLQLDEAASKT 119

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +   ++ P NL   E  +T SIG A +   + +  E+LK A++AMY AK  G N
Sbjct: 120 KLIGEKILHQVSQPYNLGGHEHQITCSIGVALFHHHEQSQDELLKQADIAMYQAKKVGRN 179

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F      S      ++ DL +A+   +  L Y   + +  + I G EALI+W HP+
Sbjct: 180 AICFFDPGMQTSINARVELERDLNIAINEQQFELFYQIQLDIHGQAI-GAEALIRWPHPE 238

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS ++F+ +AEE  +I  I  ++L+     +  W+   +   + + +N+++K L   
Sbjct: 239 LGLISPAKFIPLAEETDLIIPIGSWVLDTACAQLKQWQKDTSTQGLVLSVNVSAKQLHQV 298

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +Q  I+K   +P+ +KL  +ES+++ + E +  ++ RL+ IG+  +LDDFGT  S
Sbjct: 299 DFTSTVQNTINKYAINPNLLKLEITESMLLNSIEDTINIMSRLQTIGVRFSLDDFGTGYS 358

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P + +K + S +      E    I+R+II MA+++    IA+ +  E     
Sbjct: 359 SLQYLKRLPLNQLKIDQSFVRDITVDESNRVIIRTIIAMAQSLGLETIAEGVETEAQRTY 418

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L   GC + Q   +  PL  +     LK 
Sbjct: 419 LLTNGCTHFQGYLLGKPLPIHDFESALKS 447


>gi|254502224|ref|ZP_05114375.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438295|gb|EEE44974.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 831

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/751 (21%), Positives = 304/751 (40%), Gaps = 50/751 (6%)

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
           +           ++L   + + W +L    +    L       SG   I +A +++   +
Sbjct: 85  LINAAALAAVGLTILPSVYVLGWALLVVAVMAQMGLR---WHKSGRYPIEQASAKVIARA 141

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
                                ++            +     +  ASI  I +     +  
Sbjct: 142 VH---------------HATILSALWAVVPIAALAVGDVQGIWIASIVTIGMICGGAFAL 186

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             +     +           W+L+      + +A      + I+   L    V+IV    
Sbjct: 187 ATVPQAAFR-----------WLLVLYTVSAVSLAAANIDQSWILIALLTSFAVIIVG--S 233

Query: 384 FTVIQHVLATGYFSQ-GIFSDGERQSLAVLGS----GDIVWDWDIVRDRVTTTPDIATIL 438
            T    +  + + S+  +   G+  +L +        D  W+ +I  +    +    +  
Sbjct: 234 STSTSWLFTSHFLSEGELRQRGDLIALMMNEIEDKDSDWFWETNIGGNLKNVSSRFVSAS 293

Query: 439 GLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           G +  S+       L     H + +D + + LD  +         E  V   D +  W  
Sbjct: 294 GRSVNSLQAMRLTDLAFSLSHPDAQDGY-SALDEAITEITAFRDLEIGV-DVDGEARWWA 351

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +   P  +  G    Y G+A+DITE K +   +   A QD LTGI NR  FL +    L 
Sbjct: 352 VSGTPAFDERGYFTGYRGVASDITEMKVANALVTQLAEQDALTGIGNRNWFLKQADLKLA 411

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                     T+ +ID+D +K +ND  G A GDD+L+ +  R   + +   +LAR  G+ 
Sbjct: 412 AQLEKRANTLTLFLIDLDNFKVVNDTSGHAAGDDLLIQVAERFRSISEGRTLLARFGGDE 471

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  +    ++      FA  + K    P  + +RE  + A++GF+    +  + +++++ 
Sbjct: 472 FAAVGEFVSD-QAAEVFANELVKVTRKPFKVGKREFAIGATVGFSRLRKTNSSVNDLMRE 530

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A+Y AK  G     +F   +     +R  ++ DL  A E+  L + + PI+      
Sbjct: 531 ADIALYKAKEGGRGQALAFAEEMEREVRERRELEADLREAFESDGLTIEFQPIVEARSGR 590

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +V  E L++W HP  G +    F+ IAE   +I  + +++L++  +    W D       
Sbjct: 591 VVSSEVLVRWQHPTRGEVVPDVFIPIAEHAGLILPMGMWVLKKACKVAAQWPDLE----- 645

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+++   +D  L E +  ++ +T +   R+ L  +ESV + +   +   L  LR +
Sbjct: 646 TVAVNLSAVQFMDPNLVETVSDVLMETGFPGERLVLEITESVFLKDIGSASEKLDGLRDM 705

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           GI + LDDFGT  S L YL    FD +K + S +    E+    AI+ +II +A N+   
Sbjct: 706 GIKIALDDFGTGYSSLLYLRNYNFDKIKIDKSFVDEIGEQSEGLAIIAAIIALAHNLGLE 765

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + A+ +  +  +  L  +GCD +Q  +   P
Sbjct: 766 VTAEGVERQFQVDALRTLGCDTLQGYYFGRP 796


>gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 601

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 244/446 (54%), Gaps = 9/446 (2%)

Query: 519 ITEQKKSLE----GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + ++KK LE     +L  A  D LTG+PNR+  +++L   L+ +  D   +  V+ +D D
Sbjct: 148 VEQRKKQLEVANAKLLEMALHDPLTGLPNRRFLMEQLEQSLNRAKQDSQSQFAVLFLDCD 207

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG  VGD++L++L+RR+  LL   DILARL G+ F I+L S ++S ++   A
Sbjct: 208 RFKVVNDSLGHLVGDELLIALSRRLETLLNPDDILARLGGDEFIILLKSIHHSQQVTQIA 267

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++ ++++ P  L   E+ +  SIG A W  +      +L++A+ A+Y AK  G      
Sbjct: 268 NSILEALSQPFQLEGYEVFINTSIGIALWHPNYENPEHLLRDADNAVYKAKALGRGRYHI 327

Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +      + + ++ +L  A++  EL + Y PI+ L   +IVG EAL++W HP  G I
Sbjct: 328 FDSTMHVAAINTLELETELHKAIKEQELVVYYQPIVVLNTGQIVGFEALVRWQHPTRGLI 387

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELC 811
           S   F+ IAEE+ +I  +  ++L +  + + +W+ Q       F+ +N++++ L    L 
Sbjct: 388 SPHSFIPIAEEIGLIIPLGQWVLHQSCQQLQTWKKQNLVDDSFFVSVNLSARQLTQLNLN 447

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  +I  T  +P  +KL  +ES +M NP+ +  +L + ++ GI L +DDFGT  S LS
Sbjct: 448 EQVDQIIHDTQINPQCLKLEITESSLMENPQIAIEILKKFKQRGIQLGIDDFGTGYSSLS 507

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL Y P DT+K + S +    E      ++  II +AK +E  +IA+ I     +++L  
Sbjct: 508 YLHYFPLDTLKIDQSFVKQIDENSKHLGLVPIIINIAKILEMNVIAEGIETPTQLRQLLS 567

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           + C   Q    + P+     ++L+  
Sbjct: 568 LNCKLGQGYLFSRPVNAEEAIRLVSS 593


>gi|262376601|ref|ZP_06069829.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262308311|gb|EEY89446.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 958

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 139/567 (24%), Positives = 264/567 (46%), Gaps = 10/567 (1%)

Query: 393 TGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                Q   S  ER  L    +  + + ++  +   D +   P    + G     + G  
Sbjct: 383 RRDIQQERLSQ-ERLKLVASVLEQAAEGIFILNPELDYIDVNPHYEYLSGFERDEIIGKS 441

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              +   + + +  F+  +   +  + G    E   +    +   + + I  +++  G I
Sbjct: 442 LFDIAVQNKSQQRTFQANIVKQI-QKIGSYDGEVYAKFLSGKESTLWLHINAVTDDEGRI 500

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             YIGI +D+TE+K   + +      D LT +PNR  +  +L   L +S  D      V+
Sbjct: 501 THYIGIVSDLTERKLQEQRLSYLENYDTLTDLPNRFYYNYQLHQYL-VSQKDSIKEMAVI 559

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ++ID+++ +N+ L    GD++L  + +R+         +A L+G+ F I+    +    
Sbjct: 560 RLNIDRFRPLNEYLSNNGGDELLRQVAQRLRMTNAEALFVAHLNGDDFAILYEISHIRPS 619

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      + ++ + P N+  ++  +T S+G A +         +   AE A+  AK+ GG
Sbjct: 620 VQHHCERIAQAFSRPFNIYGQDHVITLSMGVAFYPDHGRQLDYLNNCAEQALNEAKNLGG 679

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N +  +   +   ++  V ++ DL  A++N+EL + Y P I   D+ I G EALI+W+HP
Sbjct: 680 NTIHFYSSENHSLQNKGVFLERDLRKAIQNNELIVYYQPKINFSDQSIYGFEALIRWNHP 739

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I+   F+ +AE+  +I  I   ++++ A+ I  W D      I + +NI ++ L  
Sbjct: 740 EKGIIAPGLFIPLAEQTSLISDIGRLVIQQAAKQIRQWNDLGFNH-ICVSVNIVAQQLRR 798

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L + +   I+    S + ++L  +ES ++ N E  + LL  +++  I + LDDFGT  
Sbjct: 799 GQLLDDLDQAIADNQISGASLELEITESSLIENSEAVKNLLNEIKQRHIHIALDDFGTGY 858

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           S LSYL   P DT+K + S +    E +  AI+ +++ M K +  T++A+ I  E  ++ 
Sbjct: 859 SSLSYLADFPIDTLKIDRSFVCKIGENKQAAIVSAMVAMGKAMGMTVVAEGIETEEQLEY 918

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L  + CD  Q    + PL        L
Sbjct: 919 LRDLDCDIAQGYLFSKPLPEQDATAYL 945



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 96/321 (29%), Gaps = 24/321 (7%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
            A+   +   I   + +L +          I        L      F   YL        
Sbjct: 95  LAVGISIAAGIFTIYYYLPQA---NPAFEDIEALTLSALLLIVTQAFGLTYLTQK----- 146

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + Y   + +  +        Y+   +     + L   ++                + L  
Sbjct: 147 LSYFCLAFLPSLLPFLLSQIYHIGHSNPFFALALNFAMIVILLCATSSYRIHSRTSRLYA 206

Query: 342 PAWILI------FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
              IL+        W   L   +   ++       +   L L   L+   V +       
Sbjct: 207 ENDILVKNAEQQVHWTDELCQQLKTEVNKS---KDIEQQLQLSNQLLEQKVRERTYDIEQ 263

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLP 454
            +  + +  +   LA   +G   WDW+I    +T        IL  +             
Sbjct: 264 INHDLKNQQQNLKLAHEIAGIRPWDWNIQERSITLTNHKDEKILRDSKD----HHLQLQY 319

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRY 512
            IH  D   F+  +   +  +  R    +R++ ++  + W+    R +S    N   LR 
Sbjct: 320 LIHPEDLAYFKRNMKQHLRGQIERYDATYRIKLSEGGWSWVHDIGRVISRDPKNKKPLRM 379

Query: 513 IGIANDITEQKKSLEGILCNA 533
           +GI  DI +++ S E +   A
Sbjct: 380 VGIRRDIQQERLSQERLKLVA 400


>gi|150377228|ref|YP_001313823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sinorhizobium medicae WSM419]
 gi|150031775|gb|ABR63890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sinorhizobium medicae WSM419]
          Length = 1071

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 131/561 (23%), Positives = 245/561 (43%), Gaps = 32/561 (5%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            + S  +  + D V   D          +   +L +   ++      +       +  NF 
Sbjct: 529  QLSSVLESTMDSVMLLDADWRVRYLNENAKKLLQIGDEALGKK---FWKLFPEEEMGNFA 585

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                  +  R      +     +     W+     P  +             DITE++++
Sbjct: 586  KHCREVMERRVRSFFEDH--LPSLG--RWIEANASPTQD------GISIFCRDITERRRA 635

Query: 526  LE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             E        +   A  D LTG+PNR  F +     L+ S    + R  V+ +D+D +K 
Sbjct: 636  EEDTLLAQKQLAHMARHDMLTGLPNRMFFRECFEQALNESR---HARMAVLCLDLDGFKA 692

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG   GD +L  +++R+ + ++  + +ARL G+ F II     +  +    A  + 
Sbjct: 693  INDTLGHPAGDVLLRQVSQRLIQSVRTTETVARLGGDEFAIIQPLAKSRDEAFHLAQRLI 752

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
             +++ P ++     TV  SIG A       ++ E++K A++A+Y AK  G      F   
Sbjct: 753  DTLSEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAADIALYSAKSSGRGTYRLFDVA 812

Query: 697  VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            + +       +K  +  A+ N E  L Y P++ L    +   EAL++W HP+ G I+ SE
Sbjct: 813  MHAQLQAHQQMKVAMRDALANREFELHYQPLVNLESRCVSCCEALLRWRHPQRGMIAPSE 872

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE   I  I  ++L+   R    W ++     + + +N++        L   +  
Sbjct: 873  FIPIAEETGAIVLIGEWLLDEACRQAARWPER-----VSVAVNLSPVQFKHRNLVGAVAN 927

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +S +   P+R++L  +E+V++   E +  LL  LR++G+ + +DDFGT  S L YL   
Sbjct: 928  ALSSSHLDPARLQLEITETVLLDESEHNLELLQDLRRLGVKIAMDDFGTGYSSLGYLRSF 987

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            PFD +K + + +      R   AI++++  + +++  T   + +  E  +  +   G D 
Sbjct: 988  PFDKIKVDQAFVRDLPHGRESLAIVKAVAGLGQSLGMTTTVEGVETEDQLAIVNSEGFDE 1047

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            +Q    + PL    I +L+ +
Sbjct: 1048 VQGYLFSRPLPAAEISRLIAD 1068



 Score =  105 bits (262), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 4/152 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + +++ V      +  +     R       +  ++W  D   D            G    
Sbjct: 248 YGLLEDVDERRRAADALRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  IH +DR   + I       + G  + E+R+R AD  + W+I   +P  
Sbjct: 308 EALG--FGWVDVIHPDDRQAVQEIFFKATAGK-GPTRSEYRLRRADGSWAWVIDVGQPRF 364

Query: 504 NSNGDILRYIGIANDITEQKK-SLEGILCNAF 534
           +++G  L Y+G   DIT+++   +      AF
Sbjct: 365 SADGTFLGYVGSVLDITDRRAGEIAQQEAQAF 396



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                I  +       + + +  E     V     + W  D   + +   P  + + GL 
Sbjct: 120 FVVVTIVDITELRGIEETLRASEEHYRSLVDLHPQVPWIADRAGEVLEVGPRWSELTGLG 179

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W   +H  D    +      +      L +E+R+     ++ W   R   
Sbjct: 180 EKETLGK--GWAKAVHPQDAGALQDAWRRSLTN-GTPLDWEYRLLTMTGEYRWFRARAAA 236

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
             +++  I+R+ G+  D+ E++++ +
Sbjct: 237 KRDADEKIVRWYGLLEDVDERRRAAD 262



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 48/168 (28%), Gaps = 6/168 (3%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           QP        +  +     I    A     Q   +           S D V   D+    
Sbjct: 361 QPRFSADGTFLGYVGSVLDITDRRAGEIAQQEAQA---FIRSIFDSSPDCVRVLDLEGRP 417

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        I GL         + W      +D        +S    +  R +   R   
Sbjct: 418 LLMNEAGRRIFGLN-EDAPITGQTWDSIGRASDAHKVEAGWESVRHGKTARFEITVR--D 474

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           A  +   M +   P++++ G   R + I  DIT+ K + + I      
Sbjct: 475 AGGEERCMDVIAAPITDNLGKPSRILSIWRDITDAKLASDEISRAQKH 522



 Score = 48.0 bits (113), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               + G  + V   D     V        +L      + G   + L      ++ +   
Sbjct: 17  FQYLMDGVAEPVIVKDAGSRFVFINEAACFLLDKDRNELLGRTDHDLL---PTEQADKIV 73

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDITEQKK 524
            LD  V       + E ++   D     ++ + RP+S   G       +    DITE + 
Sbjct: 74  ALDRVVLSTGEGHEIEEQITTPDGTSRTLLTKKRPVSIPTGSTEEKFVVVTIVDITELRG 133

Query: 525 SLEGILCNAFQ 535
             E +  +   
Sbjct: 134 IEETLRASEEH 144


>gi|206969002|ref|ZP_03229957.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
 gi|206736043|gb|EDZ53201.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
          Length = 906

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 250

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 365 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLAMALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + K +     + E ++T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKKLNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 659 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 719 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 897

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 898 ELLEN 902


>gi|229180025|ref|ZP_04307369.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228603234|gb|EEK60711.1| Sensory box/GGDEF [Bacillus cereus 172560W]
          Length = 883

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 155/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLAMALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + + +     + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|229047429|ref|ZP_04193022.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|228723916|gb|EEL75268.1| Sensory box/GGDEF [Bacillus cereus AH676]
          Length = 883

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + K +     + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|228959956|ref|ZP_04121621.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799699|gb|EEM46651.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 883

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + K +     + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAFYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|256112719|ref|ZP_05453640.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 703

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|315123129|ref|YP_004065135.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315016889|gb|ADT70226.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 695

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 144/568 (25%), Positives = 265/568 (46%), Gaps = 14/568 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +            +            D+ +  +          +    L ++     G 
Sbjct: 130 DLSEVHKAQAEAVFNATMLKTLFEAIPDLFFVLEQNGTITDYHANNENDLYISPNQFIGK 189

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               +  +       F+  ++  +      + +E+ +   +    +   R+R +   N  
Sbjct: 190 K--MVDVLPEKVAQKFQVHIEKTITQDS-MVSFEYELSMPEG-VIYYEARLRLLPKKN-- 243

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             + + I  DI+E  +S E I   A  D+LT +PNR   LDRL+ IL       + +  V
Sbjct: 244 --QIMVIIRDISEPHRSAELIRHQAHFDSLTDLPNRFLSLDRLSQILLEVQKS-HEKAAV 300

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D +KK+ND LG  VGD++L++   R+ + LK  D + RL G+ F +++ + N+  
Sbjct: 301 FFLDLDDFKKVNDSLGHEVGDELLIAAAARLQQTLKKSDTIGRLGGDEFIVLISNLNDEN 360

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  + ++   P  L+ R++ +T SIG A        +S +L+NA+ AMY AK  G
Sbjct: 361 DALAIAERLLQAFRKPFKLVGRDLILTLSIGIAISPKDGTCASVLLRNADTAMYQAKTMG 420

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F      + R    I+E +  A+E +E  L Y P I +    IVG EAL++W +
Sbjct: 421 RNTSSFFTPQMNVAMRRRFEIEEQMHGALERNEFELYYQPQIDVKTNTIVGAEALLRWHN 480

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
              G I+  EF+ IAE+  +I  I +F+L++  R +  W+   N     + +N++ +   
Sbjct: 481 IVLGEITPDEFIPIAEQTGLITPIGVFVLQQALRFLNEWQS-INKQNYTMAVNLSPRQFR 539

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D EL   ++  + K   +   ++L  +E V+M +       L ++ ++GI L++DDFGT 
Sbjct: 540 DPELVNIIKHTLHKNSINNECLELEITEGVLMNSQASIHDALLQIDELGIKLSMDDFGTG 599

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PFD +K + S +TG T+ +    ++++ I M+ ++E  ++A+ +  +  +
Sbjct: 600 YSSLSYLREYPFDVLKIDRSFITGITDNKADCNLVKAAIAMSHSLEIKVVAEGVETKEQL 659

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952
             L  + CD  Q  +++ PL    +L  
Sbjct: 660 DLLNELNCDIAQGFYLSKPLPAAKLLNF 687



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 2/114 (1%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D  R  +        + G       G     L  I    R+       +++ Y      
Sbjct: 35  YDEQRRVIYWNKGSELLYGYTHQEAIGKKLEDL-IIPAPMREPVIKAHSNWIKYDIEIPA 93

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            E  +   +     +      M  +  +  +   I  D++E  K+    + NA 
Sbjct: 94  SELILSHKNGNDVAV-FSSHVMFTNQYNTKQMYCIDIDLSEVHKAQAEAVFNAT 146


>gi|240137456|ref|YP_002961927.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor; putative membrane-associated protein
           precursor [Methylobacterium extorquens AM1]
 gi|240007424|gb|ACS38650.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor; putative membrane-associated protein
           precursor [Methylobacterium extorquens AM1]
          Length = 714

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 148/693 (21%), Positives = 283/693 (40%), Gaps = 33/693 (4%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
              +          +A     +    +      R+ +          ++   ++   R++
Sbjct: 28  GGHLLRTGSGLCLTVAGFAATALIASLSAEPTLRLAVVGGAAILALVLVCLILRRLTRSL 87

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF------TVIQHVLA 392
                            +A+         +     GL LI             ++  + A
Sbjct: 88  TRAMQAAESIAPATAPAVALRTLPACASGEAPPSNGLRLIADRPRLGDGADPAILTDIAA 147

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PI 449
                  +     R + A+         +D     +        I  L  G++      +
Sbjct: 148 LKLREDALSDRIARLNAALDTLSLGFLLYDRDHRLLVVNRRYHEIYRLPPGAVTPGMSAL 207

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FRVRA-ADNQFHWMIIRIRPMSNS 505
                 + + D+ +     D  +      +  +    +++  AD +   +   I+P++  
Sbjct: 208 EVLRSNVGVGDQPD--RSEDECIAEIGVMMGADAVPTQIQHLADGRVVAVE--IQPIAGG 263

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                 ++ I  + TE+  +   I   A  D +T +PNR    +R+   +  +  +    
Sbjct: 264 -----GFVAIYEEATERWNAENRIAHMARHDAVTDLPNRVLLRERIEGAITRARRETG-- 316

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K++ND LG AVGD++L ++  R+   L+  D +ARL G+ F II  S  
Sbjct: 317 FAVLCLDLDNFKQVNDTLGHAVGDELLRAVAHRLRACLREVDTVARLGGDEFAIIQASVA 376

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A  A  +   ++ P  L    + V  SIG A      +    +++ A++A+Y AK
Sbjct: 377 APADAATLAQRILNVVSAPYALTHHSVIVGVSIGIALAPGDGLEPERLMQCADVALYRAK 436

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G      F  ++ +    R  ++ DL  A E     L Y PI  L +E I G EAL++
Sbjct: 437 DDGRGVFRFFEAQMDARLQARRALELDLRAAFEAEAFDLHYQPIYDLAEERISGFEALLR 496

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +S +EF+ +AEE+ +I  +  ++L R  R+   W D      + + +N+++ 
Sbjct: 497 WTHPTRGRVSPAEFVPLAEEIGLIVPLGEWVLRRACREASGWPD-----GLKVAVNVSAA 551

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +QA ++++  S  R++L  +ESV++ N   +  +L  LR +G  + +DDF
Sbjct: 552 QFTSIALIGTVQAALAESGLSARRLELEITESVLLVNGSATVAILHGLRDLGARIAMDDF 611

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   PFD +K + S     T  +    I+R+++ +A ++  T  A+ +   
Sbjct: 612 GTGYSSLSYLRSFPFDKMKVDQSFTRDLTVEQGSGFIVRAVVSLASSLGMTTTAEGVETP 671

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +  L   GCD +Q    + P+  + +  LL 
Sbjct: 672 EQLAWLREEGCDEVQGYLFSPPVPASELPALLA 704


>gi|265994160|ref|ZP_06106717.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
 gi|262765141|gb|EEZ11062.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
          Length = 709

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|221066710|ref|ZP_03542815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220711733|gb|EED67101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 809

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 149/635 (23%), Positives = 276/635 (43%), Gaps = 15/635 (2%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               KG      +    +   +           R        AL   + + V  +     
Sbjct: 181 MALAKGDPLPAFMDVGSLPALVKQALQHQHARGRSQLHFHAQALAIPVSITVHSLQQPDS 240

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           Q         + +    +     +     +    W         + TP  A ILG A+  
Sbjct: 241 QGQSRLLITVEDLRKQEQLTRDLLNAQEVANIGTWLSYFDGKP-SLTPKAARILGWAADQ 299

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 + L  +H  DR          +    G   +E R++       W+        +
Sbjct: 300 -PFEYADLLGCVHAEDRAFADAQWKKGLA--TGHYAFEMRIQDGT-SVRWVDALGTIERD 355

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G  +R  G   DITE+K++   +   AF D LTG+PNR   +D    +LD++      
Sbjct: 356 ATGKPIRGYGTLLDITERKRTERRMEKLAFFDALTGLPNRFHGIDLAQRLLDIAGQRGQ- 414

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           + TV+ +D+D++K+IND  G  VGDD+L  + RR   +L    ++ARL G+ F + + + 
Sbjct: 415 QATVLFVDLDRFKEINDSQGHVVGDDLLAEVARRCERMLGGDGVVARLGGDEF-MFVRAL 473

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  +  +++ P+ + +    V AS+G A + S   +  E+L+ A++AMY A
Sbjct: 474 TEGNDTMALAHEVCATLSSPLRVDDLCFEVRASVGVALYPSHGHSVDELLQRADIAMYQA 533

Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +GG + + +        +  I     L  A+  S L L + P I L    + G+EAL 
Sbjct: 534 KTQGGGNCQLYDAQMGHRLQRRIALGAKLEEALAQSRLELHFQPKIALDSNTLYGVEALA 593

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   +WG +S +EF+ +AEE  +I A+  + L+  AR   +W       P  I +N+++
Sbjct: 594 RWHDEEWGWVSPAEFISVAEERGLIIALGDWSLDAAARQWRAWSSAGIAQPPVIAVNVSA 653

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             ++ +   E   A++     SP  I+L  +ES +M +P +++ +  +L + G +L++DD
Sbjct: 654 AQMMSDSFSERALAIMRAHGVSPRCIELEITESALMHDPAKAKRVASQLVEQGFTLSIDD 713

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+ L   P   +K + S + G       +AI+ ++I +A  ++   +A+ +  
Sbjct: 714 FGTGYSSLARLQSFPVSRLKIDMSFVRGMLSEPGSLAIVTAVIGLAHALKLRTVAEGVET 773

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
           +  + +L  + CD +Q    +  +    + +  L 
Sbjct: 774 QSQLDKLRDLHCDEVQGYLFSKAVPAAELARDWLT 808


>gi|254424120|ref|ZP_05037838.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191609|gb|EDX86573.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 595

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 263/549 (47%), Gaps = 8/549 (1%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S       D+    ++        +G A   +   +  +L  IH +D    +      + 
Sbjct: 38  SPIGTTILDLDGRFLSANRSFCQTVGYAEDELANRLFTYL--IHPDDVPILKESSKQLLS 95

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +R   Q++ R R          + +  + NS    + ++    DITE K     +   A
Sbjct: 96  GKRQYFQFKTRYRTKKENLLSACLSVSLIHNSQQQAIYFLLQVVDITEYK-LEPQLRHRA 154

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LTG+ N+  F+D++   +      D+ +  ++++DID++K I D LG ++GD +L+
Sbjct: 155 FPDRLTGLANQALFVDKVEQAVAWQEHQDDTQCAILLLDIDRFKVITDRLGRSIGDQLLI 214

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +L +R+   ++  D +A L G++F ++L               +   +  P  L   E+ 
Sbjct: 215 ALGKRLETSIRQYDSVACLGGDKFAVLLEEIEGLDGALVVCDRIYDRLENPFKLGSYEVF 274

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDL 711
            + SIG A   +    SS++L+NAE A+Y+AK +GG     F  +          +    
Sbjct: 275 ASISIGVACSNAGYEQSSDLLRNAEAALYYAKGQGGGCYAVFDRTMHERTVALWQMATQA 334

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AVE  EL L Y P+I     ++V +EALI+W+HP++G IS  EF+ + EE  +I  I 
Sbjct: 335 QFAVEQRELSLHYQPVINTKTGQVVAVEALIRWNHPQYGRISPGEFIPVMEETGVITLIG 394

Query: 772 LFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            ++L    + ++ W  Q     P+ + +N++++ L   +L   +++++++T      + L
Sbjct: 395 SWVLRTACQQVVQWHQQLGNINPVKVHVNLSARQLAQRDLARHVESVLAETGLPKDLLWL 454

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ VM N +    +L +L+ + I L +DDFG   S LS L  +P D +K + S +  
Sbjct: 455 EITETAVMKNYQAGIQVLEQLKALEIGLCIDDFGIGYSSLSRLQQLPIDLLKIDRSFVQH 514

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   I+R+I+ +A N+   I+A+ I  E  +  L  +GC  IQ  + A P+   +
Sbjct: 515 IGSRGENTEIVRTIVDLANNLGLDIVAEGIETETQLAGLRSLGCYNIQGFYFAKPMTPTA 574

Query: 949 ILKLLKERF 957
            L+ +++R 
Sbjct: 575 ALQFIQKRN 583


>gi|229081000|ref|ZP_04213513.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228702314|gb|EEL54787.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
          Length = 883

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 155/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + + +     + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|315126134|ref|YP_004068137.1| hypothetical protein PSM_A1041 [Pseudoalteromonas sp. SM9913]
 gi|315014648|gb|ADT67986.1| hypothetical protein PSM_A1041 [Pseudoalteromonas sp. SM9913]
          Length = 746

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 144/568 (25%), Positives = 267/568 (47%), Gaps = 17/568 (2%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            + S  +R +L    V    D +  +D     V   P   T+ G           +   Y
Sbjct: 183 QLKSTEDRLNLFAKCVESLTDALAIYDKDFRLVDINPSFLTLFGGVREQYLKKEFHLAGY 242

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               D+    +I ++   +    +Q E ++R +D+      I I  + N+   I  Y+ +
Sbjct: 243 ----DKSYIESIKNTVRKHE--HIQEEVKLRNSDHALLPFEISIDEIKNAQNQITNYVVV 296

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+TE+KK+   +   + +D  T +PNR  F   L  +        +    ++V D+D 
Sbjct: 297 YSDLTERKKTESELNNLSNRDRTTSLPNRNLFFSDLQKL-----AKQHSHHALLVFDLDN 351

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KKIND LG  +GD +L  L  R+ +L +  D+  RL G+ F +++ + N+ L I   A 
Sbjct: 352 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSNTNDILTITRMAK 411

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694
               +IA P  +   E+ +T+S+G   +     T   +LKNA+ AMYHAK +G ++   +
Sbjct: 412 QFLAAIATPFKMAGHELAITSSVGIVLFPEDGNTPEILLKNADTAMYHAKKKGNSYLFFN 471

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R+ I+  +   ++     + Y P + +   ++ G+EAL+++  PK G IS 
Sbjct: 472 DTMNRQAVKRLQIENLMRFGLKEDHFEVYYQPKMNIRTGKLAGMEALVRFITPKKGVISP 531

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE   I  I   +L +  RD+  W D        + +N+++K     +L   +
Sbjct: 532 GVFIPIAEETGQIIEIGEVVLNKACRDVKQWLDAGLF-NARVAVNLSAKQFSLPDLTSRI 590

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ K       ++L  +E  VM +P+ +  ++  L   GI L +DDFGT  S L+YL 
Sbjct: 591 DVILQKNELPSYFLELEITEGTVMDDPQEAIAIMRSLSARGIHLAMDDFGTGYSSLAYLK 650

Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P +T+K + + +    TE+   ++ SI+ +A N++  ++A+ +     I  L  + C+
Sbjct: 651 QFPLNTLKVDKAFIDDMKTERGRNMVDSIVTIAHNLDLHVVAEGVEQASQISILEELNCE 710

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVK 961
            +Q  + + PL  +     LK++    K
Sbjct: 711 TLQGYYYSKPLSKDEFTAFLKQQQSQSK 738



 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 10/182 (5%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
             ++   ALV  +  I+ L+   ++  V +       +    +R    V GSGD +WDW+
Sbjct: 28  SFNLNLNALVVSVCAIMSLVVVYLLTIVHSLRRSHSQLQLSEKRLKSTVEGSGDTLWDWN 87

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I   +V     I     + S ++     N    IH  D  +   +L           +  
Sbjct: 88  IKTGKVI---RINDKYVMNSNNLVEFPPN-KSLIHPRDLTHVDYLLKKHFAEESTFFEAT 143

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA-----FQD 536
           +R++ +  ++HW++ R + +  ++N   LR  G   DI++ K + + +   A       D
Sbjct: 144 YRIKDSFGKWHWVLDRGKIIEKDANLSPLRMTGTVRDISQLKSTEDRLNLFAKCVESLTD 203

Query: 537 NL 538
            L
Sbjct: 204 AL 205


>gi|229111219|ref|ZP_04240773.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|229129024|ref|ZP_04257997.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|229146319|ref|ZP_04274690.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228636952|gb|EEK93411.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228654261|gb|EEL10126.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|228672213|gb|EEL27503.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
          Length = 883

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/808 (19%), Positives = 322/808 (39%), Gaps = 64/808 (7%)

Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
             ++   +    +           W    +I      L+ +  L     L  +    I  
Sbjct: 81  VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 138

Query: 262 SSSLIIFLF---------------------MYLHWNRWHAKVGYITFSGIACIAILFCMS 300
            S   +FL                         +  R      ++  S      I F ++
Sbjct: 139 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 198

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFI 352
            +    T  + R+     +L               R   L+                  I
Sbjct: 199 NHLSTETIILLRLLYRIPILLIAIAGSISEDHNSHRNYFLVNPIIGKKALVVFPYLAVAI 258

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391
            +   + ++  +  +        + ++I      +Q                        
Sbjct: 259 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTS 318

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              + S+ +    ++         D ++  D+    +      + +LG  +  + G    
Sbjct: 319 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC- 377

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I   D+      L+         LQ   +    D   +++ + I P+   +G I  
Sbjct: 378 -FSIILDEDKHKLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 433

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DIT  KK  E I   AF D +T I NR  F  +L  ++  +   ++    ++ +
Sbjct: 434 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYL 492

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   + 
Sbjct: 493 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 552

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689
                + K +     + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK    
Sbjct: 553 QLCNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 612

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    ++     R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ 
Sbjct: 613 VSIYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 672

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF+ IAEE   I +I  + LE+  + +  W        + I +N+++K+    +
Sbjct: 673 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 731

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + + + ++ T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S 
Sbjct: 732 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 791

Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L
Sbjct: 792 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 851

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C +IQ  + + P+  ++  +LL+ 
Sbjct: 852 QKNKCQFIQGYYYSKPIHIHAFTELLEN 879


>gi|327480582|gb|AEA83892.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 886

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 136/576 (23%), Positives = 269/576 (46%), Gaps = 21/576 (3%)

Query: 393 TGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           +   +  + ++ ER+  ++A   S   +   D     +      + I G ++    G   
Sbjct: 309 SRDITDRVNTELERRIAAIAFE-SQQGMLITDAQNRILRVNGAFSRISGYSAAEAIGQTT 367

Query: 451 NWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             L    H  +   +  + +++      G  + E   R    +     + I  + N +G+
Sbjct: 368 ALLASGRHGPDFYRSMWSSIEA-----TGVWEGEIWNRRKSGEIFPEWLTISAVRNVHGE 422

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  Y+    DIT++K + E I   AF D LTG+PNR+  LDRL   +  ++   N    +
Sbjct: 423 VTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRLHQAMA-ASRRSNQLGAL 481

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-- 626
           M ID+D +K IND+ G   GD VL     R+   ++  D +ARL G+ F ++L +  +  
Sbjct: 482 MFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASDTVARLGGDEFVVMLENLGDDP 541

Query: 627 ---SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              + +     + +  S+     L E  +  +ASIG   +     +S E++K A+++MY 
Sbjct: 542 LRAAAQAEHIGMKLLNSLDRSYRLNELGLYSSASIGVVLFGGEACSSDELMKRADMSMYE 601

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N +  F         +R+ ++ ++   ++N E  L + P +      ++G EAL
Sbjct: 602 AKISGKNALRFFDPRMQLAVQERLRLEAEIRQGLKNGEFVLSFQPQLEQNAG-VIGAEAL 660

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +S + F+  AE   +I A++L +L++    +  W        + + +N++
Sbjct: 661 VRWQHPQRGLLSPAAFIAQAEHAGLIHALDLQVLQQACGQLARWAATPAFADLTLSVNLS 720

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  +   E +  L+ ++  +P+R+KL  +E++++ N   +   + RL++ GI  ++D
Sbjct: 721 AHLLYQDHFVEKLLDLLERSGANPARLKLELTETLLLDNMPEAIARMTRLKQHGIRFSID 780

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +SYL  +P D +K + + +    +   +  I+R+I  +A  +   +IA+ + 
Sbjct: 781 DFGTGYSSMSYLQQLPLDELKIDQTFIRRLPDDASSLTIVRAICALASGLGLEVIAEGVE 840

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     L   GC   Q      P+    + +++  
Sbjct: 841 SEAQRSVLLGNGCHRFQGYLFGKPMPAMELEEMVSA 876



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 90/319 (28%), Gaps = 28/319 (8%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIF----LFMYLHWNRWHAKVGYITFSGIACI 293
            L+    L        R+    A   + + F    +F  L+ +     +     + +  +
Sbjct: 13  LLALCWLLAFTTRSWNRSGQRTAKLLAGLWFGSACIFGMLNTSIGQTGIILDARTAVLSM 72

Query: 294 AILF--CMSFYYPMVTASIARITLASIVLY------YTYFIIYHGMKGYERAVLLIPAWI 345
           A LF   +      V A   R+ +    +            +    +   R  L+  A+ 
Sbjct: 73  AGLFGGPLVAGIAGVLAGGFRLWMGGPGVVPGLANVLLPIALGLAYRCASRRRLIGIAFW 132

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-----------TVIQHVLATG 394
            +  + + L + +   +   ++   L    V  + L               ++  +L   
Sbjct: 133 QLLGFGVLLHLGVLGLIA-LLLPSPLGAEAVREIALPTLLILPLATATLGVLLNDLLERD 191

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +     R         D++   D     +       ++L      + G   +   
Sbjct: 192 RIEQALRFSEARLRAITQAIPDLLLVLDEDGRYLEILCAERSLLYDEPSKLLGRRLH--D 249

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   +   F   +   +     +L  E+ +            R  P+    G     + 
Sbjct: 250 VMPEAEERRFLGFIQQTLNSDSPQL-IEYSLPTL-GGPKVFEGRALPLEQPPGQKRAVVW 307

Query: 515 IANDITEQKKSLEGILCNA 533
           ++ DIT++  +       A
Sbjct: 308 LSRDITDRVNTELERRIAA 326


>gi|229191871|ref|ZP_04318842.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228591633|gb|EEK49481.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 909

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 253

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 368 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLAMALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + K +     + E ++T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 662 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 722 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 900

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 901 ELLEN 905


>gi|225851746|ref|YP_002731979.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|254707098|ref|ZP_05168926.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|254709361|ref|ZP_05171172.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|254713218|ref|ZP_05175029.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716428|ref|ZP_05178239.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           M13/05/1]
 gi|256030884|ref|ZP_05444498.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|256368680|ref|YP_003106186.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM
           4915]
 gi|260169786|ref|ZP_05756597.1| sensory box/GGDEF domain/EAL domain protein [Brucella sp. F5/99]
 gi|261759331|ref|ZP_06003040.1| PAS-associated C-terminal domain-containing protein [Brucella sp.
           F5/99]
 gi|294851616|ref|ZP_06792289.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp.
           NVSL 07-0026]
 gi|225640111|gb|ACO00025.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|255998838|gb|ACU47237.1| sensory box/GGDEF domain/EAL domain protein [Brucella microti CCM
           4915]
 gi|261739315|gb|EEY27311.1| PAS-associated C-terminal domain-containing protein [Brucella sp.
           F5/99]
 gi|294820205|gb|EFG37204.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp.
           NVSL 07-0026]
          Length = 703

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|212635907|ref|YP_002312432.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557391|gb|ACJ29845.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 1451

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 132/561 (23%), Positives = 260/561 (46%), Gaps = 19/561 (3%)

Query: 402  SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
               E+  L   A+    + ++  D     V        +  L+     G + N+   ++ 
Sbjct: 887  QAEEQLRLFERAIQNISEGMFILDNEFCFVEVNEACCDLSMLSKKDFIGTLFNF--DLYP 944

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   ++   + S +  + GR   E      +     M + I  + +  G++  Y+GI +D
Sbjct: 945  D---SYSEQIRSILKQQ-GRWSNEVESARGNGTSFLMELTIDAIYDEQGELSHYVGIFSD 1000

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            ++ +K+  E +      D LT +PNR + +  L  ++       +   T+MV+D+D +KK
Sbjct: 1001 VSRRKQQEEELRKLTNNDLLTNLPNRSNLMVTLGNLVKR-----DSHHTLMVLDLDNFKK 1055

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND LG  VGD++L+ ++ RI   +     + RL G+ F I++    +    A  A  + 
Sbjct: 1056 INDSLGHQVGDELLILVSERIQAAVPHHTSIYRLGGDEFAILIDKNPDIGVSAVIAKTVI 1115

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +      L   ++ V  SIG   +         +L+ A++AMYHAK  GGN  + +  S
Sbjct: 1116 HAFESAFQLSAEKVVVGVSIGIVLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSES 1175

Query: 699  SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              ++    ++ +  +   +++    + Y P I L    + G+EAL++ +HP+ G I  + 
Sbjct: 1176 LNKNAIRQLEVENLIREGIKDDLFEVYYQPKIDLKTGNMAGMEALVRLNHPEHGLIPPNS 1235

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  I   +L++       WR Q       + +N++SK     +L + +++
Sbjct: 1236 FIPLAEENGLIVEIGDIVLKKACFAAQKWRSQGLFNG-RVAVNLSSKQFALPDLQQRIES 1294

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T    + ++L  +E  V+  PE++  ++ +L K+G+SL LDDFGT  S LSYL   
Sbjct: 1295 VLRLTQLPAANLELEITEGTVIREPEKAIKVMQQLSKMGVSLALDDFGTGYSSLSYLKRF 1354

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P  T+K + + +    +      ++ SII +A N+  +++ + +     +  L  + C+ 
Sbjct: 1355 PIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEETSQLSILRALKCEE 1414

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ    +  +  +    LL  
Sbjct: 1415 IQGYIYSKAVTEHEFTNLLHN 1435



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 3/177 (1%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            ++I       +  PA      L+V+LI    I+  +      + I    ER  L++ GS
Sbjct: 719 TLSIEITPPWWLSTPAKALYF-LVVLLISIATIKIAMRRRVVQRQIAKSEERLKLSLWGS 777

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           GD +WDWDI   ++  +    + L                 IH  D+   R  L+     
Sbjct: 778 GDEMWDWDIETGQIYRSNIWGS-LEFPRDGQRSGQEGEESNIHPMDQIRVRDALNKHFYG 836

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
                +  +RV+   + + W++ R + +  + N + LR  G   +I+  K++ E + 
Sbjct: 837 ETDHFEAAYRVKGKSDDWVWILDRAKIVERDENDNALRMTGTIKNISNFKQAEEQLR 893


>gi|229071243|ref|ZP_04204467.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228711864|gb|EEL63815.1| Sensory box/GGDEF [Bacillus cereus F65185]
          Length = 909

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 155/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 194 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 253

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 254 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 313

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 314 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 367

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 368 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 425

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 426 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 482

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 483 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 541

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + + +     + E ++T+
Sbjct: 542 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 602 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 662 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 721

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 722 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 780

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 781 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 840

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 841 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 900

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 901 ELLEN 905


>gi|225626750|ref|ZP_03784789.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           str. Cudo]
 gi|261218214|ref|ZP_05932495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M13/05/1]
 gi|261314571|ref|ZP_05953768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M163/99/10]
 gi|261316873|ref|ZP_05956070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis B2/94]
 gi|261320938|ref|ZP_05960135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M644/93/1]
 gi|265987943|ref|ZP_06100500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M292/94/1]
 gi|265999654|ref|ZP_05467272.2| PAS-associated C-terminal domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|225618407|gb|EEH15450.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           str. Cudo]
 gi|260923303|gb|EEX89871.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M13/05/1]
 gi|261293628|gb|EEX97124.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella ceti M644/93/1]
 gi|261296096|gb|EEX99592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis B2/94]
 gi|261303597|gb|EEY07094.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M163/99/10]
 gi|263095150|gb|EEZ18819.1| PAS-associated C-terminal domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264660140|gb|EEZ30401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella pinnipedialis M292/94/1]
          Length = 709

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|228954023|ref|ZP_04116052.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805589|gb|EEM52179.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 883

 Score =  492 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 155/725 (21%), Positives = 312/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNTHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKIAES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + + +     + E ++T+
Sbjct: 516 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFECMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|30021841|ref|NP_833472.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|29897397|gb|AAP10673.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
          Length = 909

 Score =  492 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 161/808 (19%), Positives = 322/808 (39%), Gaps = 64/808 (7%)

Query: 203 AIFLTIFYMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
             ++   +    +           W    +I      L+ +  L     L  +    I  
Sbjct: 107 VFYMFFLFFCLIAFCYKILKECNKWEKAFFICDICIVLTSIFTLE--WYLFNQPNLNIFA 164

Query: 262 SSSLIIFLF---------------------MYLHWNRWHAKVGYITFSGIACIAILFCMS 300
            S   +FL                         +  R      ++  S      I F ++
Sbjct: 165 LSLGDVFLSFLYPIADLLFLLLGVSLFFRPTIFNSKRKIYIFIFVLISSATFNYIYFYLN 224

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFI 352
            +    T  + R+     +L               R   L+                  I
Sbjct: 225 NHLSTETIILLRLLYRIPILLIAIAGSISEDHNSHRNYFLVNPIIGKKALVVFPYLAVAI 284

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---------------------HVL 391
            +   + ++  +  +        + ++I      +Q                        
Sbjct: 285 LIGFTLKEQTSSSTLITGNCITFIFVLIRHSIVRMQNNSLTKRLQAFNAQLEEKVTLRTS 344

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              + S+ +    ++         D ++  D+    +      + +LG  +  + G    
Sbjct: 345 DLVHKSEALSQKQQKFKSLYEYHPDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC- 403

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I   D+      L+         LQ   +    D   +++ + I P+   +G I  
Sbjct: 404 -FSIILDEDKHKLALALEKVKQQESASLQLSSQY--KDGFTYFLYVTIIPII-IDGQISG 459

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DIT  KK  E I   AF D +T I NR  F  +L  ++  +   ++    ++ +
Sbjct: 460 SYIMVKDITALKKQQEEIKYLAFHDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYL 518

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND LG + GD +L  + +R    L     L+R+ G+ F II+ +  +   + 
Sbjct: 519 DLDRFKAINDTLGHSSGDYILEEVAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLF 578

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGG 689
                + K +     + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK    
Sbjct: 579 QLCNQLFKCMKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNS 638

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    ++     R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ 
Sbjct: 639 VSIYDDVIAKKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPEL 698

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF+ IAEE   I +I  + LE+  + +  W        + I +N+++K+    +
Sbjct: 699 GIISPYEFIPIAEETLQIISIGKWTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQED 757

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + + + ++ T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S 
Sbjct: 758 FVKSISSTLTNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSS 817

Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P DT+K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L
Sbjct: 818 LAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFL 877

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C +IQ  + + P+  ++  +LL+ 
Sbjct: 878 QKNKCQFIQGYYYSKPIHIHAFTELLEN 905


>gi|300715521|ref|YP_003740324.1| Sensory box-containing diguanylate cyclase [Erwinia billingiae
           Eb661]
 gi|299061357|emb|CAX58466.1| Sensory box-containing diguanylate cyclase [Erwinia billingiae
           Eb661]
          Length = 839

 Score =  492 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 139/570 (24%), Positives = 255/570 (44%), Gaps = 23/570 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
              +  + +     R       + D +W+ +        +   A +       M G    
Sbjct: 277 QLMHSQRELADSESRFRDVAETASDWIWETNAQGALTYLSKRFAAVTHYDVAKMLGRSL- 335

Query: 452 WLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNG 507
                  +D       L  D  +  R   L++  R     A        +   P++  NG
Sbjct: 336 -------DDVLQHDEHLVSDWIIQQRADGLRHALRCYSVTALGAKRICSLIANPVT-VNG 387

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I  Y G  +DIT++ ++   I   +  D LTG+PNR    + L   L  +         
Sbjct: 388 QIAGYRGTVSDITQEVEAQARIHYLSQHDALTGLPNRVYMSEFLLGRL-QAQPTLERPLV 446

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D +K IND  G A GD VL  ++ R+  +LK  D+++R  G+ F +I+ +  + 
Sbjct: 447 LISLDLDNFKPINDTWGHAAGDCVLNEVSHRLRSVLKAGDLVSRQGGDEFVLIVSNLADE 506

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +IA    ++   +  P  L + E+ + AS+G A      + + E+L+ A++A+Y +K  
Sbjct: 507 AEIAACCKSLIDELRRPFMLGQHEVFLGASLGIALAPRDAMQAEELLRLADIALYKSKQE 566

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    +          R  ++ +L  A+   EL L Y P   L    + G EALI+W 
Sbjct: 567 GRNRWTWYTPEMAELLVKRREMERNLRKAIGGDELRLYYQPRYDLKKGRLEGAEALIRWQ 626

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G I    F+ +AEE  +I  I+ ++L R   D +SW       P+++ +NI+  + 
Sbjct: 627 HPASGMIMPDSFIPLAEETGLIIDISTWVLHRACTDAMSWPS-----PMYVSVNISPVEF 681

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L + +   +  +   P R++L  +E++ + NP+ +  ++  L+ +G+ LT+DDFG 
Sbjct: 682 RSGHLAKRVANALHSSGLPPERLELEITENITLENPQSALEVMQALKTLGVRLTVDDFGA 741

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L YL   PFD +K + S M    ++ + ++I+  II + +    T+ A+ I     
Sbjct: 742 GYASLGYLKTFPFDGMKMDRSYMNDFPNSPQALSIVEGIIGLGRAFALTVTAEGIETREQ 801

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++EL  + C   Q  ++  P+  +    LL
Sbjct: 802 LQELQAIACQEGQGYYLGRPMPLDRFRLLL 831


>gi|307609682|emb|CBW99190.1| hypothetical protein LPW_09731 [Legionella pneumophila 130b]
          Length = 771

 Score =  492 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/576 (23%), Positives = 264/576 (45%), Gaps = 16/576 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443
           +        +    +   +  A+  S   V   D+ ++    +        I G      
Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G +      +   +       +             E      + +F+W  I + P+ 
Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S G +  YI I ND+T+++   + +L  A  D+LT +PNR   +DR+   +  +  +  
Sbjct: 311 DSFGYVKNYICILNDVTQRRDMEDQLLQQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                + +D+D++K  ND LG ++GD +L ++  R+  + +  D +ARL G+ F I+L  
Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +N L+    A  + K I  PI + +  + +T S+G + +         ++K+A+L+MYH
Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +   ++    + + +   L  A++N EL+LVY P+I L    +VG EAL
Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W     G +S ++F+ +AEE  MI  +  + +++    +  W        + I +N++
Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACMQVKEWHKA-GFKNLSIAVNLS 608

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L E +  ++  +      ++L  +ES+++ + +     +  L+ +G  L +D
Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P D +K + S +T     +   AI ++II +  ++   ++A+ + 
Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVE 728

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     +T  GCDY Q     +P    +IL+ LK 
Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764


>gi|91778190|ref|YP_553398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91690850|gb|ABE34048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
          Length = 728

 Score =  492 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 129/572 (22%), Positives = 241/572 (42%), Gaps = 16/572 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   L          +   R       S D +   D         P    +LG  S 
Sbjct: 152 AALVLDKLEIRRLEMARRTSQFRFEKIAGTSPDAIICADEQGLTTFWNPAAEKLLGYRSD 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     +  I           L +           E  VRAA+     + +    M 
Sbjct: 212 EILGRS---IDLIAPEQFTARLYQLAAAGESLTEGRTVEMMVRAANGTMIPVELSGS-MW 267

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G   R+  I  DITE++++ E +L  A  D LT +PNR    +++   L        
Sbjct: 268 REDGRP-RFGAILRDITERRQNEERLLRLAHIDPLTELPNRTMLREQVELALSK-----E 321

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +  +VM++D+D +K +ND LG + GD VLV++ RR+    +  D +AR+ G+ F I+L  
Sbjct: 322 MTASVMMVDLDGFKDVNDSLGHSGGDAVLVNVARRLQACARSGDTVARMGGDEFAILLPG 381

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++++    A ++  +++  + +  + + + ASIG A +    +T  E+L +A+LA+Y 
Sbjct: 382 LPDAVEAGQIADSVIAAVSQLLTIDGQPVNIGASIGIAMFPGDGLTVRELLSSADLALYQ 441

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G +    F         +      +L  A+ + E  L Y P +RL D  +VG EAL
Sbjct: 442 AKAEGRHCRRFFSADLREEATLRRAYQGELARALAHQEFELHYQPQVRLADSTLVGAEAL 501

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +    F+   E   +   I  +++         WR     P   + +N+ 
Sbjct: 502 LRWRHPQKGLLGPGAFLPAIEAGLLAPRIGDWIISMACEQAAQWRSLV--PDFRVGVNLF 559

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                  +L + + A +      P+ ++L  +E++++ + E     L  L + G+ +  D
Sbjct: 560 GAQFRTGDLADKVLAALQAFNLPPAALELEITENIILRHDEHMLGPLRELHQRGVGIAFD 619

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           D+GT  + LS L   P   +K + + +     +    AI+R+I+ +  +    +IA+ + 
Sbjct: 620 DYGTGYASLSMLKRYPLSRLKIDQTFVRAMLESPPDAAIIRAILYLGHSFGLEVIAEGVE 679

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  L + GC+  Q      P+      +
Sbjct: 680 TGEQAARLRKKGCETAQGFLFGKPMPAEEFAR 711


>gi|282865049|ref|ZP_06274102.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
 gi|282559972|gb|EFB65521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
          Length = 611

 Score =  492 bits (1268), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/580 (23%), Positives = 264/580 (45%), Gaps = 25/580 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +      A   +   +   D     V     +  +LG    S+ G     L  +   DR
Sbjct: 32  RELRDYRAAFRVAALPMAVVDGRGQVVRANDALGALLGTHPASLPGRRAADLVDL-ATDR 90

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                     +   R RL+   R++  D +  W  + + P+++        +    DI++
Sbjct: 91  -RTWQAYGEVLAGTRSRLRCTRRLKHPDGRSLWTEVTLVPLADPADGPEGALLCLEDISD 149

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-----NLRPTVMVIDIDKY 576
           + +    +      D +T +PNR  F +RLTT L  +   D     + R  +  +D+D +
Sbjct: 150 RHELQLRLRHLRMHDPVTRLPNRTLFFERLTTALATAPFQDDSLPRHGRIGLCYLDLDGF 209

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLK 629
           K +ND LG  +GD +L ++  R+ +             ++ARL G+ F I++     + +
Sbjct: 210 KAVNDTLGHHIGDRLLAAVAGRLTDCAEADGHRRTGGHLVARLGGDEFAILVEDSAGTHQ 269

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + + A ++  ++  P ++  + ++V+ASIG    + +  T + +++ A+  +Y AK  G 
Sbjct: 270 LTELAGSVLGALERPFDVGGQRLSVSASIGVVERSVADATPTGLMQAADTTLYWAKADGR 329

Query: 690 NHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F             +   L  AVE  E  L Y P++ + D  + G+EAL++W+HP
Sbjct: 330 GRWTLFDPERNAHRMTRQALSATLRAAVERREFTLEYQPLVGMADGVVRGVEALVRWNHP 389

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLL 806
           ++G ++   F+ IAEE   I  +  ++L    R    W+ +    P +FI +N+A + L 
Sbjct: 390 RFGMLAPHRFVPIAEEDGSIVQLGRWVLRTACRQARRWQLEHPAEPALFISVNVAVRQLW 449

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D++L   +  ++++T  +P  ++L  +ES V G+  R   +L  L  +G+ + +DDFGT 
Sbjct: 450 DSDLVADVAEVLAETGLAPGLLQLELTESAVTGSAGRPLRVLQELSDMGVRIAIDDFGTG 509

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNIETTIIAKDI 918
            S L+YL  +P   +K +GS + G        S+     I+ +++ +A  +  T+ A+ +
Sbjct: 510 YSNLAYLSRLPVSVLKLDGSFVRGFRQEDGARSSPADETIVEAMVQLAHRLGLTVTAECV 569

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
                 + L R+GCD  Q    +  +    I +L+  R P
Sbjct: 570 ETSGQAERLRRIGCDTGQGWLYSRAVTPERIAELIGSRPP 609


>gi|188583519|ref|YP_001926964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179347017|gb|ACB82429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 716

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 141/581 (24%), Positives = 264/581 (45%), Gaps = 25/581 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +  LA       +     R   A+      +  +D  +  +        I GL  G++H 
Sbjct: 126 RTRLALVEAHAELSEQNRRFDAALENMTHGLCMFDAEQRLLVWNRRYLEIFGLPEGALHV 185

Query: 448 PI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRP 501
            +  R  +  +    R      +D+     R  L  E         AD +   +  R  P
Sbjct: 186 GMGQRAIIEVLVALGRYKRGLTVDAVSEGTRTSLTDEGPKAVLRELADGRVIAVTHR--P 243

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           M+   G    ++    DITE++++   I+  A  D LT +PNR    +     ++   T 
Sbjct: 244 MAEGGG----WVATFEDITERRRNEARIIHMARHDGLTDLPNRTRLREIGAERVEALRTG 299

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            + +  V+ +D+D++K +ND  G AVGD +L ++  R+   ++  D++ARL G+ F  +L
Sbjct: 300 ADGQLAVLCLDLDRFKPVNDSFGHAVGDALLRAVAGRLRGHVRGHDVVARLGGDEFA-VL 358

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI---TSSEMLKNAE 678
               ++      A  + + +A P  L    + +  S+G A   +          +LK A+
Sbjct: 359 SHVEDAAGAMGLAERLIEIVAAPYRLDGITVEIGMSVGIALAGAEDDLPRDIECLLKEAD 418

Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+Y AK  G      F         +R+ ++ +L  A+  S   L Y P++ L D  I 
Sbjct: 419 IALYEAKTGGRGTARLFEPQMDATLRERLGLERELREALAQSRFELHYQPLVDLSDNRIT 478

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL++W HP+ G ++ + F+ +AEE  +I  I  ++L +  RD  +W D      I +
Sbjct: 479 GMEALVRWRHPERGLVNPAVFIPLAEETGLIVPIGEWVLSQACRDAAAWPDA-----ISV 533

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L +    + +   ++ +    SR++L  +ESV++ + E +   L  LR++G+
Sbjct: 534 AVNVSPLQLRNRGFVQSVLGALATSGLKASRLELEITESVLLDDTEVNLETLHSLRRLGV 593

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            +++DDFGT  S +SYL   PFD +K + S +  S       AI+R+I+ +  ++  T +
Sbjct: 594 RISMDDFGTGYSSISYLRRFPFDKIKIDRSFVPDSAGQSDAGAIIRAIVSLGASLGITTL 653

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +  E  +  +   G   +Q    + P   + I  LL+ 
Sbjct: 654 VEGVETEPQLATIRAEGAQEVQGYLFSPPRPVHEIAVLLEA 694



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D +W  D        +P    +LG    S+ G  R+ +                  +  R
Sbjct: 21  DWLWVTDAEDRFSYISPGAEPMLGRPPTSLIGTQRSAMIC---EAAGASLATYRETIAAR 77

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK----SLEGILC 531
           R   +  +  R  D    W  I  RP  ++ G  L Y G+ +D+TEQ +     +E    
Sbjct: 78  RPFRELTYVYRHPDGTPRWFEISGRPHFSAEGTFLGYQGVGSDVTEQHRTRLALVEAHAE 137

Query: 532 NAFQDNLTGIPNRQSFLDRLTTI 554
            + Q       NR+ F   L  +
Sbjct: 138 LSEQ-------NRR-FDAALENM 152


>gi|315502496|ref|YP_004081383.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Micromonospora sp. L5]
 gi|315409115|gb|ADU07232.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Micromonospora sp. L5]
          Length = 716

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/574 (23%), Positives = 258/574 (44%), Gaps = 16/574 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     Q +     R      G+   +    +    +      A +LG A   M     N
Sbjct: 145 ARDTVEQALRDSEARFRAVFTGAAIGIGIAGVDGQIIEVNQSFADMLGYAVAEM--RRMN 202

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H +D      +    +  +R   + E R    D    W  + +  + + +G    
Sbjct: 203 VSALFHPDDAAGMWELYQELIEGKRDSARVEKRYYRKDGSVVWTDLAVSLIRHDDGRPRF 262

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  DIT++ +  + +   A  D LTG+PNR  F + L  + D +  D   R  +  I
Sbjct: 263 TVAMVEDITQRYELQQRLRFQALHDPLTGLPNRTLFFETLGDVFDGAGPDQ--RVGLCFI 320

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKI 630
           D+D +K +ND LG  +GD +L  + RR+ + +     ++AR+ G+ F I++ S+      
Sbjct: 321 DLDGFKAVNDSLGHDLGDRLLKVIARRLSDCVAGRGHLVARMGGDEFVILVDSDGGIDDA 380

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A     +++ P+++ ++++ V+ASIG     +++ +  +++K A+  +Y AK  G  
Sbjct: 381 VEVAELALAAVSAPVHVGDQQLAVSASIGIVECPAAETSVGDLMKAADTTLYWAKAEGRG 440

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +      +D     +  +L  A++  E  L Y PI+ L+D  +V +EAL++W HP+
Sbjct: 441 RWAVYDPERSAADIARSALAANLPAALDRGEFVLHYQPIVSLLDGTMVAVEALVRWQHPE 500

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I    F+ +AEE  +I  +  ++L +  RD  SWR         + +N+A++   D 
Sbjct: 501 LGLIGPDRFIGLAEETGLIVRLGAWVLRQACRDAESWRRAYPDTTPVVSVNLAARQADDP 560

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            + E +   +  T      ++L  +ES VMG+       L +L  +G+ L +DDFGT  S
Sbjct: 561 AIVETVAEALQHTGLPAELLQLELTESAVMGSAGEPLRTLHQLAGLGLRLAIDDFGTGYS 620

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            L+YL  +P   VK  G  + G            +   I+ +++ +A  +E ++ A+ + 
Sbjct: 621 NLAYLRRLPIHCVKLAGPFVEGIRGDGGDAVADHRDERIVDALVRLAHALELSVTAEAVE 680

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            E+  + L  + CD  Q     +P+  + I   L
Sbjct: 681 TEVQAERLRALRCDTGQGRLFGAPMPADGIRARL 714


>gi|149185505|ref|ZP_01863821.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
 gi|148830725|gb|EDL49160.1| sensory box/GGDEF family protein [Erythrobacter sp. SD-21]
          Length = 783

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 166/764 (21%), Positives = 285/764 (37%), Gaps = 44/764 (5%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
            + Y   ++     T ++           FG L    N      +   A  + A     +
Sbjct: 13  FLLYRRLKNFSSGATTSLLPAFASI----FGLLWTFWNGVPQIAIAIWAAIQAAQLCFFV 68

Query: 267 IFLFMYLHWNRWHA----KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
                    +        +   I         I F +  Y       +    L  I    
Sbjct: 69  WLDRQIDFDDATVPEMETQWRRILILQAIGSTIWFVVFPYLAPYAEGLEIAVLGIIGTAI 128

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
               +       + A+               +       +      P+L+      V LI
Sbjct: 129 LCGTLLVHRNAPQAALFHTLTMAPSLAVAAVM-------IGGWGAWPSLILIASFAVALI 181

Query: 383 GFTVIQHVLATGYFSQGIFSDGE----RQSLAV--LGSGDIVWDWDIVRDRVTTTPDIAT 436
           G T  Q     G     I         R  L      S D +W      +    T  +  
Sbjct: 182 GETRTQERYFVGAARAEIERRENNATVRMLLNDYEEQSSDWLWTVGPRGNMRDVTERLGA 241

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            L      + G     L           R  L + +  R        R+R       +  
Sbjct: 242 ALSTDPDHLEGMPFLDLFVAGEE-----RDALATRLLERSPFRDLIVRLRVK-GDVRYWR 295

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           I  RP  +      R  G+A D+T  +   E +   A  DNLTG+ NR  F +RL + L 
Sbjct: 296 ISARPRDDG-----RMSGVARDVTAGRLIEERVAFMAHYDNLTGLANRYLFNERLRS-LA 349

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      +  +D+D +K IND  G  VGD +L  +  R+ + ++  D++ARL G+ 
Sbjct: 350 GEQASRGSNIALFYLDLDDFKAINDTRGHLVGDRMLREVGTRLEQEVRSEDLVARLGGDE 409

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +++ +      + + A      +  P  +      V+ S+G A  T     + E+++ 
Sbjct: 410 FAVLIETRAGDGLLIERAHRFLSVVRAPYEIEGHSYRVSTSVGVARCTDGDCDAEELMRR 469

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LA+Y AK +G +++  F         +R   + DL  A+   ++ + Y  I+ L   E
Sbjct: 470 ADLALYAAKEKGRDNLALFEPALDRIARERRETEIDLREALTRGQMRMHYQAIVDLDTGE 529

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             GLEAL++W HP+ G I   +F+ IAEE  MI ++  +++ +   D  +          
Sbjct: 530 TTGLEALLRWYHPQRGIIPPGDFLTIAEETGMITSLGEWVIRQTLSDAAALP-----GNF 584

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I IN++   + +  L   +   I  T  +P R++L  +E V+M       + L RLR++
Sbjct: 585 RIAINLSPTQVKNPNLVATVAQAIHATNIAPERVELEITEHVLMDQGAAGHVTLLRLREL 644

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           GI + LDDFGT  S L YL   PFD +K + + +T         AI+ +I  +A  +   
Sbjct: 645 GIRIALDDFGTGYSSLGYLRRFPFDRIKIDRTFVTDVASDLGSQAIVSTITRLADALGMD 704

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             A+ I  +  +  L ++G    Q   +  P+    I+  ++ER
Sbjct: 705 TTAEGIEDQRQLDLLRKLGVQEAQGFLIGRPVPPEEIV--IRER 746


>gi|116670340|ref|YP_831273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter sp. FB24]
 gi|116610449|gb|ABK03173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter sp. FB24]
          Length = 821

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 152/552 (27%), Positives = 267/552 (48%), Gaps = 14/552 (2%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +     ++ +       + + + I+G A  ++       L   H  D+D  R +  S 
Sbjct: 270 EMAHVGSIEYIVATGETWHSEEFSRIIGRADNALD-TREAMLGLTHPEDQDLVRQVWKS- 327

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +        +E+R+   D +  W+  RIR   + +G  LR++    DITE+K + + +  
Sbjct: 328 LENGADSADFEYRILKGDGELRWLHSRIRSAKSPDGRPLRFLDTVLDITERKNAEQILEW 387

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LTG+PNR    + L   LD ++      P VM +D+D++K IND +G   GD +
Sbjct: 388 RARHDALTGLPNRYMVTEVLQGCLDRASR-----PVVMFVDVDRFKLINDGIGHGAGDTI 442

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ L  R+   ++  D +AR  G+ F ++  +          A  +R+S  +P  +  R 
Sbjct: 443 LILLGERLKAAVRAGDTVARFGGDEFVVVCENLL-MRGAKVLAERIRESTRLPFEVDGRR 501

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKE 709
           I +  SIG A    ++ T+  ML+ A+ AMY AK  GG+    + V      + R+ ++ 
Sbjct: 502 IYLNVSIGIALA-GAEDTAELMLQGADSAMYRAKSAGGDSSAVYDVRMTGSAAGRLDLES 560

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL LA+   EL L Y PII +  E  VG EAL++W HP  G+I    F+ +AEE  +I  
Sbjct: 561 DLRLALGRGELSLNYQPIIEIATETPVGFEALLRWHHPVHGSIPPDTFIPVAEETGLILP 620

Query: 770 INLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           I  ++LE   R +  WR +          +N++ + L+  +  + ++A I      P+ +
Sbjct: 621 IGTWVLEEAFRQVQEWRRELCGAENFSAAVNVSGRQLVAKDFPDLVEAAILAAGIDPAAV 680

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E+V+M  P+  +  L RL ++G+ L++DDFGT  S LSYL ++   T+K + + +
Sbjct: 681 HLEVTETVLMDQPDLPKETLHRLSRLGVGLSIDDFGTGYSSLSYLKWLSARTLKIDRTFV 740

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G+      I+  ++ MA +++  +IA+ +  +  + EL R+     Q    + PL  
Sbjct: 741 EELGNDPHGATIIELVLGMAGSLDLGVIAEGVETQDQLSELRRLRVPLAQGFLWSKPLPA 800

Query: 947 NSILKLLKERFP 958
             +   L    P
Sbjct: 801 ERVPAWLAAALP 812



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +Q    D   QSL +   G  V   D              + GL  G   G     L  
Sbjct: 1   MAQEHHDDLIMQSLLLDEIGQSVIGMDEQWRITYWNRASERLYGLRPGDALGMKITDLGI 60

Query: 456 I----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           I        R   + I ++    R      E  +R    +   +   + P+   +   + 
Sbjct: 61  IGGAEPPGQRATVQEIAETLAHGR--DWAGELWMRHRTGRDFPVHATVSPIRGRHTVPVA 118

Query: 512 YIGIANDITEQKKSLEGILCNA 533
            + I+ DIT++K S   +   +
Sbjct: 119 VVAISKDITDRKHSEAILRRLS 140



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             R S  V  SGD +   D+     +       + G +S    G     L      D   
Sbjct: 136 LRRLSAMVESSGDAIIGADLTGAITSWNAGATRMFGWSSREAVGQSYRLLTTR---DASG 192

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F + + + +G          R R  D     + + + P+   +G  +    IA D+TE +
Sbjct: 193 FDSDVAARIGGGTFVTGVHARWRCRDGSLIDVELTVSPVYGPDGAQVGASAIARDVTEIQ 252

Query: 524 KSL 526
           +  
Sbjct: 253 RLK 255


>gi|218898609|ref|YP_002447020.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218540972|gb|ACK93366.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 838

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 160/756 (21%), Positives = 302/756 (39%), Gaps = 30/756 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 91  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 146

Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318
           +L+ YL    +          +        +            +   I        L   
Sbjct: 147 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 206

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 207 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 260

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 261 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 320

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+      +          LQ   +     +   W  + 
Sbjct: 321 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 377

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +   
Sbjct: 378 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 436

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 437 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 495

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ +    +      P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 496 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 554

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I   + +++
Sbjct: 555 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 614

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 615 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 673

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + +   I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 674 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 733

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 734 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 793

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           A+ +  +  +  L R  C  IQ  + + P+  +  +
Sbjct: 794 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFI 829


>gi|302865940|ref|YP_003834577.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|302568799|gb|ADL45001.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
          Length = 716

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 257/574 (44%), Gaps = 16/574 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     Q +     R      G+   +    +    +      A +LG A   M     N
Sbjct: 145 ARDTVEQALRDSEARFRAVFTGAAIGIGIAGVDGQIIEVNQSFADMLGYAVAEM--RRMN 202

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H +D      +    +  +R   + E R    D    W  + +  + + +G    
Sbjct: 203 VSALFHPDDAAGMWELYQELIEGKRDSARVEKRYYRKDGSVVWTDLAVSLIRHDDGRPRF 262

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  DIT++ +  + +   A  D LTG+PNR  F + L  + D +      R  +  I
Sbjct: 263 TVAMVEDITQRYELQQRLRFQALHDPLTGLPNRTLFFETLGDVFDGAG--PEQRVGLCFI 320

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKI 630
           D+D +K +ND LG  +GD +L  + RR+ + +     ++AR+ G+ F I++ S+      
Sbjct: 321 DLDGFKAVNDSLGHDLGDRLLKVIARRLSDCVAGRGHLVARMGGDEFVILVDSDGGIDDA 380

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A     +++ P+++ ++++ V+ASIG     +++ +  +++K A+  +Y AK  G  
Sbjct: 381 VEVAELALAAVSAPVHVGDQQLAVSASIGIVECPAAETSVGDLMKAADTTLYWAKAEGRG 440

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +      +D     +  +L  A++  E  L Y PI+ L+D  +V +EAL++W HP+
Sbjct: 441 RWAVYDPERSAADIARSALAANLPAALDRGEFVLHYQPIVSLLDGTMVAVEALVRWQHPE 500

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I    F+ +AEE  +I  +  ++L +  RD  SWR         + +N+A++   D 
Sbjct: 501 LGLIGPDRFIGLAEETGLIVRLGAWVLRQACRDAESWRRAYPDTTPVVSVNLAARQADDP 560

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            + E +   +  T      ++L  +ES VMG+       L +L  +G+ L +DDFGT  S
Sbjct: 561 AIVETVAEALQHTGLPAELLQLELTESAVMGSAGEPLRTLHQLAGLGLRLAIDDFGTGYS 620

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            L+YL  +P   VK  G  + G            +   I+ +++ +A  +E ++ A+ + 
Sbjct: 621 NLAYLRRLPIHCVKLAGPFVEGIRGDGGDAVADHRDERIVDALVRLAHALELSVTAEAVE 680

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            E+  + L  + CD  Q     +P+  + I   L
Sbjct: 681 TEVQAERLRALRCDTGQGRLFGAPMPADGIRARL 714


>gi|33415351|gb|AAQ18203.1| hypothetical protein csv013 [uncultured bacterium]
          Length = 742

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/597 (23%), Positives = 275/597 (46%), Gaps = 28/597 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    ++++L        +       + A   +    +DW      +  + +   + GL 
Sbjct: 124 LLAGRLRYLLRASRTRHELERSKATLARAQDLARMGSFDWRQGATDLVFSMEGMRVFGLG 183

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G ++  L  I   +R  F+ IL   + +    L  + +V   D +   + I   P
Sbjct: 184 GRDKLG-LKRILRMIPDEERQGFQRILREVLDHGTV-LCNDIQVNLHDGRQRILHIEAEP 241

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N    ++ Y GI  D+T+++ + + I   A  D LTG+PNR+    R    ++ +   
Sbjct: 242 EFNEVAALIGYTGIVQDVTDRRVAEDKIKHLANFDTLTGLPNRRQIFWRSERAIEHAKRL 301

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL------------ 609
           ++    ++ I +D++K IN+ LG   GD++L+ ++RR+   +K  + +            
Sbjct: 302 NHC-VAILQIGVDRFKIINENLGHHAGDELLIEVSRRLRSCVKHSEQVMEGNMEMTGMRG 360

Query: 610 -------ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                   RL  + F ++L    +  +  D A  + +++  P+    +E  +TASIG A 
Sbjct: 361 HRTLEAVGRLGADEFVVLLPEIASEAEAMDTASRILQALRDPMMAAGQECFITASIGIAL 420

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSEL 720
           + +  ++ +++L+NA++AM  AK +G N  + +        RV +  D  L  A+E  EL
Sbjct: 421 FPAHGLSVADLLRNADVAMDMAKGQGRNTAQVYDPQLASKGRVRLDLDTALHKALERDEL 480

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P I +   ++VG EAL++W       I   EF+ +AE   +I  ++L+ + + AR
Sbjct: 481 VLYYQPKIDVRTSKMVGAEALMRWVR-DGKIIPPIEFIPLAEATGLINVMSLWAITQAAR 539

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W+ Q       I +N+ S+     +L + +QA++ +    P  ++L  +E+ +M +
Sbjct: 540 QAKIWQKQFGF-DASIAVNLPSRLFELPDLVDKIQAILDQEGVPPHFLELEITETGLMKD 598

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            +     L RL ++GI +++DDFGT  S L+YL  +P   +K + S +     T +  A+
Sbjct: 599 LQGVVPSLHRLNQMGIEISIDDFGTGYSSLAYLTTLPISELKIDRSFVHDLGTTPQSSAV 658

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +II +A+ +   +IA+ +     ++ L  +GC   Q    A P+    +   L  
Sbjct: 659 VSAIIALARALGLKVIAEGVEEVSQMEVLYNLGCHICQGYLFARPMPAAEVATWLAS 715


>gi|218232130|ref|YP_002368551.1| sensory box/ggdef family [Bacillus cereus B4264]
 gi|218160087|gb|ACK60079.1| sensory box/ggdef family [Bacillus cereus B4264]
          Length = 906

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 191 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 250

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 251 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 310

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 311 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 364

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 365 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 422

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 423 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 479

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 480 HDTVTKIGNRAFFHKKLKRVIKNAEITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 538

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + K +     + E ++T+
Sbjct: 539 VAKRFQSCLPSHTHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 599 SLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSVSIYDDVIAKKIERRLRLEKDLP 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 659 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 718

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 719 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 777

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 778 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 837

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 838 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 897

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 898 ELLEN 902


>gi|218530457|ref|YP_002421273.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218522760|gb|ACK83345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 805

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/550 (26%), Positives = 248/550 (45%), Gaps = 29/550 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                  +   +W  D      V          G +  +                     
Sbjct: 268 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 312

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   V +   R     R R AD     + +  R ++   G     +G A D+TEQ+++
Sbjct: 313 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 370

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLG 584
              I   A  D LTG+PNR  F   L  ++   + T       ++ +D+DK+K +ND LG
Sbjct: 371 EARITHMAHHDALTGLPNRALFTTCLAEVIAEHARTGAGAGAALLCLDLDKFKLVNDTLG 430

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L ++  RI   L   D++ARL G+ F ++L    ++  ++  A  + ++++ P
Sbjct: 431 HPAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLR-TPDAGTVSAVAGRIIEALSHP 489

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           + L +RE  +  S+G A        S  +L++A+LA+Y AK  GG+    F  +    DR
Sbjct: 490 VRLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGSIAHCFEAAMDSWDR 549

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                + DL  A    +L L Y P++ +    IVG EAL++W HP  G I  SEF+ +AE
Sbjct: 550 SRRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAE 609

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++L +   +   W D     P+ I +N++     D  L   ++  ++ + 
Sbjct: 610 ETGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALALSG 664

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P R++L  +ESV++   E +   L  LR +G+ + +DDFGT    LSYL   PFD +K
Sbjct: 665 LAPHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIK 724

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S ++  G      AI++++I +  ++    +A+ +  E+    L   GC+ +Q    
Sbjct: 725 IDRSFVSRLGEDPHSTAIVQAVIGLGASLGIVTVAEGVETEVQFAHLRAEGCEEVQGYLF 784

Query: 941 ASPLGFNSIL 950
             P+     +
Sbjct: 785 GRPIPAPQAV 794


>gi|228922463|ref|ZP_04085765.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837177|gb|EEM82516.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 883

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 156/725 (21%), Positives = 313/725 (43%), Gaps = 26/725 (3%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                          + +SS+   +++ YL+ +     +  +       I ++       
Sbjct: 168 PTIFNSKRKIYIFIFVLISSATFNYIYFYLNNHLSTETIILLRLLYRIPILLIAIAGSIS 227

Query: 304 PMVTAS---------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               +          I +  L          +I   +K    +  LI    + FI+ +  
Sbjct: 228 EDHNSHKNYFLVNPIIGKKALVVFPYLAVAILIGFTLKEQTSSSTLITGNCITFIFVLIR 287

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +  + ++      L   L      +   V        + S+ +    ++        
Sbjct: 288 HSIVRMQNNS------LTKRLQAFNAQLEEKVTLRTSDLVHKSEALSQKQQKFKSLYEYH 341

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+    +      + +LG  +  + G        I   D+      L+     
Sbjct: 342 PDPIFTIDLNGIFLNVNKAGSVLLGAPTDELLGETC--FSIILDEDKHKLALALEKVKQQ 399

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               LQ   +    D   +++ + I P+   +G I     +  DIT  KK  E I   AF
Sbjct: 400 ESAFLQLSSQY--KDGFTYFLYVTIIPII-IDGQISGSYIMVKDITALKKQQEEIKYLAF 456

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F  +L  ++  +   ++    ++ +D+D++K IND LG + GD +L  
Sbjct: 457 HDTVTKIGNRAFFHKKLKRVIKNAKITES-EFALLYLDLDRFKAINDTLGHSSGDYILEE 515

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R    L     L+R+ G+ F II+ +  +   +      + K +     + E ++T+
Sbjct: 516 VAKRFESCLPSHAHLSRIGGDEFTIIIENYTDEDYLFQLCNQLFKCMKKSFIIHEHKLTL 575

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + SIG A +  S I ++ +LKNA +AMY   AK      +    ++     R+ +++DL 
Sbjct: 576 SLSIGLAIYPHSGIDTATLLKNANVAMYDAKAKEFNSVSIYDDVIAKKIERRLRLEKDLP 635

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+ IAEE   I +I  
Sbjct: 636 NALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFIPIAEETLQIISIGK 695

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+  + +  W        + I +N+++K+    +  + + + ++ T    S + L  
Sbjct: 696 WTLEQACKQMKRWHA-LGYSHLKIGVNLSAKEFEQEDFVKSISSTLTNTGLPASSLDLEL 754

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P DT+K     +  + 
Sbjct: 755 TERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPIDTLKIPREFITMSE 814

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ  + + P+  ++  
Sbjct: 815 TCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQGYYYSKPIHIHAFT 874

Query: 951 KLLKE 955
           +LL+ 
Sbjct: 875 ELLEN 879


>gi|225871868|ref|YP_002753322.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225794249|gb|ACO34339.1| PAS domain S-box/GGDEF/EAL domain protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 763

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/731 (18%), Positives = 295/731 (40%), Gaps = 15/731 (2%)

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288
           +   ++ FG  + L +      +          ++S I      LH      +   +   
Sbjct: 23  MILCAVMFGVSASLYSALVIIGITQPWLMWPLFAASCISLSVTLLHAQENRRRRDRLLRI 82

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
            +A +        ++         + L S +        Y   +       +    +   
Sbjct: 83  AVAVVTATLAGIDFFFNPPLDGGLLALLSAIYLADGLAYYRRFRRISSG--VCTTLLGFA 140

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
            W +  W   +          A      L  + +   +I  +L        +  + ER  
Sbjct: 141 AWGLV-WPVASLLGHYAPHFQAPPVLWNLPKLFVAIGMILTLLEQETL--RMAREAERNR 197

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                S   ++  ++    +     +A +    S            Y    +RD +    
Sbjct: 198 TLYDKSQCGLFLTNMSGTLLDCNDALARMSSRGSSQAMIGTSAVACYADPAERDLWIR-- 255

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D            E  +   D      ++  +   +  G  +   G   D+TE ++    
Sbjct: 256 DILRDGSIE--NRELHLIRPDGTAWIALMNAKLRRDLRGQPMEIEGALLDVTEHRRMHRQ 313

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +L  A  D LTG+ NR S  D +   L  +  + + +  ++ +D+D++K IND  G  +G
Sbjct: 314 LLWQARHDPLTGLANRASMEDAVQQALAGADANGS-QVAMICMDLDQFKWINDNHGHTIG 372

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D  L +  +R+   +  PD+L R+ G+ F ++L + ++    A+    + K++  P+ + 
Sbjct: 373 DGFLRAFAQRLKTAVTAPDLLGRVGGDEFLLLLRNVSSEQDAAERLERVLKTLDKPLEVE 432

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-RVSSFRSDRVMI 707
              +  + S G A +      ++++ ++A+ A+Y AK  G +  + + R      D + +
Sbjct: 433 GHTLRPSVSAGVAIYPCDSAHAADLRRHADHALYRAKEMGRDQYQFYSRNRKKIDDDIAL 492

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L   ++ +   L Y P +   D    G+EAL+++ HP+ G +  ++F+ IAE   ++
Sbjct: 493 ERLLHRGLKENWFVLHYQPQM-FADGGFFGVEALLRFQHPERGLLQPADFLSIAERNGLL 551

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  +++E   R    W+ Q   P + + +N+++      + CE ++ ++ +    P  
Sbjct: 552 HPLGEWVIEEACRQHREWQSQGL-PMLTMTVNVSAVQFNRPDFCESVERILLRQQMPPEY 610

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES+VM + E S   + RL+++GI + +DDFGT  S LSYL  +P D +K + S 
Sbjct: 611 LELEITESLVMNDCEDSVAQMKRLKELGIRIAVDDFGTGYSSLSYLHRLPIDVLKIDRSF 670

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    E      I+ +II +A ++   ++A+ I  +   + L  +G   +Q    +  + 
Sbjct: 671 IEKLQEPHGTLPIVEAIISLANSLHLQVVAEGIEHDFQRQLLRHLGAHRLQGYLYSQAIP 730

Query: 946 FNSILKLLKER 956
              + + L  +
Sbjct: 731 GQRLGEFLMAQ 741


>gi|148360463|ref|YP_001251670.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148282236|gb|ABQ56324.1| sensory box protein/GGDEF/EAL domains [Legionella pneumophila str.
           Corby]
          Length = 771

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/576 (23%), Positives = 263/576 (45%), Gaps = 16/576 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443
           +        +    +   +  A+  S   V   D+ ++    +        I G      
Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G +      +   +       +             E      + +F+W  I + P+ 
Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S G +  YI I ND+T+++   + +L  A  D+LT +PNR   +DR+   +  +  +  
Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLLQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                + +D+D++K  ND LG  +GD +L ++  R+  + +  D +ARL G+ F I+L  
Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHGMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +N L+    A  + K I  PI + +  + +T S+G + +         ++K+A+L+MYH
Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +   ++    + + +   L  A++N EL+LVY P+I L    +VG EAL
Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W     G +S ++F+ +AEE  MI  +  + +++    +  W        + I +N++
Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACIQVKEWHKA-GFKNLSIAVNLS 608

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L E +  ++  +      ++L  +ES+++ + +     +  L+ +G  L +D
Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P D +K + S +T     +   AI ++II +  ++   ++A+ + 
Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLGHSLNLQVLAEGVE 728

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     +T  GCDY Q     +P    +IL+ LK 
Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764


>gi|313202360|ref|YP_004041018.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312441676|gb|ADQ85782.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 722

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 154/643 (23%), Positives = 275/643 (42%), Gaps = 15/643 (2%)

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
            F      +          + +         W+ +       +          +      
Sbjct: 83  VFAPVFAAQANISIRFFAASHLRDANQACLGWLFLLHPEPRQLALHQQTSLRAMADTAAR 142

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  +         +Q + +   R   A+ G+G  VWDWD+  +RVT +    T+LG    
Sbjct: 143 WLAMA------LQNQALAASNARWKFALDGAGHGVWDWDLGSNRVTFSTQWKTMLGYDEQ 196

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +    ++WL  +H  D  +F+T++D+        L  E+R+    N++ W++ +   M+
Sbjct: 197 DIGDDCQDWLSRVHPADLAHFKTLIDAVKSGEAQSLICEYRLLTKTNEWCWILSKGMIMA 256

Query: 504 NSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             + +   R IG   DIT +K+S   I   A  D LTG+PN+      L+  +       
Sbjct: 257 GKDHEGPRRMIGTNTDITARKQSERLIWQQANFDALTGLPNKHLLNQLLSERI-HGDHGA 315

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N    +M++D+D +K +ND LG   GD +L+    RI   +   DI+AR  G+ F II+ 
Sbjct: 316 NNMVALMIVDLDNFKDVNDALGHIYGDMLLMEAASRIQAAVLPADIVAREGGDEF-IIVT 374

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +  ++ + A  + + +     LL   +   ASIG A +    ++ + ++K A+ A+Y
Sbjct: 375 TAASLAELENTATNVLRVLGQSYELLSEVVFCAASIGIALYPQHTLSPNVLMKYADQALY 434

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK         +             +  +L  AVE     + Y PI RL   E V  EA
Sbjct: 435 LAKSTARGQYAFYSHELEEEALKRSKLTTELRFAVEEQAFEVFYQPIFRLDTRETVKAEA 494

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G +S +EF+ +AE   +I AI  ++ +  A    + R     P   I +N 
Sbjct: 495 LVRWKHPERGYVSPAEFIPLAESTGLINAIGDWVFKEAAMFAKALRGSYA-PDFQISVNK 553

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +    L     +   A ++        I +  +E +++   +     + ++R  G+S++L
Sbjct: 554 SPIQFLTVGKLDW-AAFLTNLDLPGKAISVEITEGLLLQQSQEVNARIKKIRDTGMSISL 612

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL     D +K + S +     + K  A+ ++II MA  +   +IA+ I
Sbjct: 613 DDFGTGYSSLSYLSSYEIDYLKIDRSFIINLTTSSKNQALCKAIITMAHELGYQVIAEGI 672

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             E  +  L  +GCD  Q   ++ PL     +  L       +
Sbjct: 673 ETEQQLHLLAALGCDLGQGYFISRPLPQQDFVAWLASSLSTTQ 715


>gi|261324330|ref|ZP_05963527.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
 gi|261300310|gb|EEY03807.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
          Length = 709

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|256060351|ref|ZP_05450524.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           neotomae 5K33]
          Length = 703

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|115526140|ref|YP_783051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115520087|gb|ABJ08071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 891

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/653 (21%), Positives = 278/653 (42%), Gaps = 21/653 (3%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           AS+     A+          + G +    +  L  A I++        +    R     +
Sbjct: 244 ASLLEPHFAAPAAIVRLTSPFDGEERLGASHKLAQAPIIVVASRGVDSVLADWRQQTVAL 303

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
             A +  + +I  L+               + +  + +R  LA+      +  +D     
Sbjct: 304 ASAALAAIAVIATLMFLLGRHLRRREDDTQRQLRLEKQRLRLAINNMTQGLTLFDAEARL 363

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        I GL    M  P       I +  DR   R +++ F+       +    V 
Sbjct: 364 VVCNQRYLEIYGLT-TEMVPPGITLREMIQYFRDRGGDRDVIERFLCSGDDFSRGSHEVT 422

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D     ++I   P+         ++    DITE+K++   I   A  D LT +PNR S
Sbjct: 423 IGDKS---LLITREPVEGG-----GWVTTHEDITERKRAEARIAYLAHNDELTDLPNRSS 474

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   + + L  +   D     ++ +DID +K IND LG  VGD +L  +   +   +   
Sbjct: 475 FRQHVQSAL--ANLGDGFNVALLYVDIDDFKGINDTLGHVVGDLLLHHIASDLKRAVGKD 532

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             +ARL G+ F +++ +     ++      ++ ++    +  E  ++  ASIG A     
Sbjct: 533 GFVARLGGDEFAVVVTNIEAMDEVTALTERVQSALYEFHDCGEHRLSADASIGIAIAPQD 592

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724
             T  +++ NA+LA+Y AK  G      F+     + +    +  DL  AV   +  + +
Sbjct: 593 GKTLDDLVSNADLALYAAKSEGRRTYRFFKPEMEVALKARHLLGADLKRAVVEHQFDVHF 652

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++ L  +++VG EAL++W HP  G +S +EF+ +AEE+ +I  +  ++L    R+  +
Sbjct: 653 QPLVDLRSDQVVGCEALLRWRHPTRGMVSPAEFVPVAEEIGLIDELGEWVLAESCREAAT 712

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + +N++            + A + ++     R++L  +E+V++ + + +
Sbjct: 713 WPAH-----MTVAVNVSPIQFRRRTFPLKVAAALGQSGLPAQRLELEITEAVLIRDDDAA 767

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSI 902
             +L  LR +G+ + LDDFGT  S LSYL   PFD +K + S +    E++ +  I++++
Sbjct: 768 LAILHELRALGVKIALDDFGTGYSSLSYLHRFPFDKIKIDRSFVATLAEEKASATIVQAV 827

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +A   +   +A+ +        L + GC  +Q    + P+    + +LL  
Sbjct: 828 VSIAAAGDKITLAEGVETIQQRDLLKQFGCQQMQGYLFSPPVPAAQLRELLDR 880


>gi|115358198|ref|YP_775336.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria AMMD]
 gi|115283486|gb|ABI89002.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria AMMD]
          Length = 749

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 129/573 (22%), Positives = 246/573 (42%), Gaps = 23/573 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++ +    E+  L V    + +         + + P    ++ +  G + G   + +  
Sbjct: 182 IARQLVHSEEQHRLVVNSLNEGILMLSPDGVVIASNPSANRMMRVK-GELVGRRLSSVIL 240

Query: 456 ---------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS- 505
                    I  +D  +               L Y      AD    W+     P+    
Sbjct: 241 YKLREDGTPIAPDDWPSRLA-----FTTATPLLDYSVGFGLADGDIIWVRGNAVPIVKPG 295

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNL 564
                  +   +DI   +++ + +   A +D LTG+ NR+   +R+  +     A     
Sbjct: 296 ETRPESVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGTHDAAAGPA 355

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  ++ ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   
Sbjct: 356 RVAILFIDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGGRHALTRVGGDEFVILVDQC 415

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++  +++  A  +  +IA P  +   E  +  SIG +        +  +++NA+ AMY A
Sbjct: 416 DDPDELSALAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDA 475

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG NH   F        +    I++ L  A+ +  L L Y P++       VG EAL+
Sbjct: 476 KQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAILSDALRLAYQPVVDARSGRTVGAEALL 535

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ 
Sbjct: 536 RWTSPELGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSP 594

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +      L E +   +++T   P  ++L  +E ++M + +    +L  L  + + +++DD
Sbjct: 595 RQF-HEGLVESVGRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDD 653

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  
Sbjct: 654 FGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVET 713

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           E     L ++GCD  Q      PL      + L
Sbjct: 714 EAQSWFLQQIGCDMQQGYLFGRPLDPADYARRL 746


>gi|39936022|ref|NP_948298.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39649876|emb|CAE28398.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 882

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/612 (23%), Positives = 273/612 (44%), Gaps = 33/612 (5%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           + +  ++   L +   +   V   V     +   V+   L      Q       R S+AV
Sbjct: 276 VVVSRSVNGVLSSW-WRELWVMVAVACASALAVAVVLFQLGRQILRQETDLRK-RYSIAV 333

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI------HINDRDNFR 465
                 +  +D     +        + GL +G++   +R +          H  D     
Sbjct: 334 DNMAQGLSLFDSTGRLLLFNQRYLDLYGLPAGALKPGMRTFEIVRQLQQAGH--DPHLLE 391

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           +     + +   R  +E      D     ++I   P+         ++    +ITE+K+S
Sbjct: 392 SYRAFALKHAGARSAFEVEF--PDG--RTILITREPIPGG-----GWVTTDEEITERKRS 442

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   A  D+LTG+PNR SF   L   L+L   +   +  ++ IDID++K +ND LG 
Sbjct: 443 DSRIHHLAHYDDLTGLPNRSSFRKHLGEALNLI--EPGDQLALLYIDIDEFKIVNDTLGH 500

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L +L  R+   +   D +ARL G+ F +++    ++  I +F   ++ ++   I
Sbjct: 501 PVGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVM---ADASDIREFVAKLQATLRDSI 557

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSD 703
           +   + ++  ASIG A          +++  A+LA+Y AK  G      F          
Sbjct: 558 DCAGQVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEGRRTYRYFMPEMDVKAKA 617

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R  +  +L  AV   +  L + P++ L    I G EAL++W HP  G +S +EF+ +AE+
Sbjct: 618 RHELATELKRAVTEHDFRLHFQPLVDLNSGTIAGCEALLRWQHPVRGFVSPAEFIPLAED 677

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I+ +  ++L++  R  + W        + + +N++            + A +++T  
Sbjct: 678 IGLIEDLGEWVLDQACRVAVGWPAS-----MTVAVNVSPIQFRRATFPLKVAAALARTGL 732

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +  R++L  +E++++ + E +  +L +LR +G+ + LDDFGT  S LSYL   P D +K 
Sbjct: 733 AAHRLELEITEALLLQDNESTLAILNQLRDLGVKIALDDFGTGYSSLSYLHRFPIDKIKI 792

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +   TE+     I+R+I+ +A     T +A+ +        L  +GC  +Q    +
Sbjct: 793 DKSFVDTLTEEAGSATIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRHLGCQQMQGYLFS 852

Query: 942 SPLGFNSILKLL 953
             L  +++ +L+
Sbjct: 853 PALPEDALARLI 864


>gi|56459864|ref|YP_155145.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178874|gb|AAV81596.1| Signaling protein with a MHYT sensor domain, PAS, GGDEF and EAL
           domains [Idiomarina loihiensis L2TR]
          Length = 829

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 160/797 (20%), Positives = 300/797 (37%), Gaps = 48/797 (6%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
             +LLA +  I  +             +W+++  +    G  S          L      
Sbjct: 33  CVALLASYTAILTLERVQIYQAKVARYSWLIVSAVISGVGVWSMHFIGMLAFELHLPMSH 92

Query: 258 EIALSSSLII------FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP------- 304
            + L+   ++      F+ M +  +    +   I  + +     L   +           
Sbjct: 93  SVLLTLISVVPAIVGSFIAMKIQMSLSSVRATLIAGTVLGAGIGLMHYTGMAAMEMSAHL 152

Query: 305 -MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL----IPAWILIFIWFIGLWMAIT 359
                        ++ L     + Y   K  ER            +   I      M  T
Sbjct: 153 RYDPLWFVLSVFVAVSLGIIALLAYRHYKKSERTSWFRRRSAQIVVAAIIALAISGMHYT 212

Query: 360 KRLDNDI---------------IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
             +  +                    +VG    +  ++     Q         +      
Sbjct: 213 AMIAANFYPTRAPDAVFSGHGNWLAYVVGIGSCLTAIMAIIASQIDRRLQQQQKLAQMSA 272

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E+    +    D +  +D     +        + G     + G   N   YI  +D    
Sbjct: 273 EQLYEVISAIDDGLLLFDEHNRVLLANQAFTRLTGDDLERIKGSKLNIEDYIERSD--KL 330

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              + + +  RR   Q +  VR        + + I  +  +      ++    DI+ + +
Sbjct: 331 LENIKNSLA-RRVAWQGKVNVRKRSGTTFPVRLSISKVRYNQQKERHFVATVTDISAEVE 389

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           S E I   A+ D LTG+ NR+S LD L   L            +++ DIDK+K +N+ LG
Sbjct: 390 SSERIRYLAYNDALTGLANRRSLLDHLQDQLATYKEAGQ-NGALILCDIDKFKILNNTLG 448

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN------SLKIADFAIAMR 638
             +GD +L  +  R+    K    LARLS N F ++L             ++      + 
Sbjct: 449 SDMGDLLLKRVAERLQSSTKANSFLARLSANEFAVVLTGLERGNSVNIKQQLLTRIYQLL 508

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  L       + S G + +  S+  +  ++  + LA+ H+K +G   V  FR  
Sbjct: 509 DQLQQPYQLNSYTHLCSFSAGASLFDDSESNAETLMTQSGLALSHSKRKGTGEVSLFRQE 568

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +      ++E L  A++ +E  L   P + +   +  G EALI+W       +S ++
Sbjct: 569 FADAVSKRVKLEEQLRNAIKQNEFELYLQPQVNIES-KPTGAEALIRWKQSDGRFVSPAD 627

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  ++ ER  + +  W+       + + IN+++K     E  E +Q 
Sbjct: 628 FIPLAEETGLIVPLGYWITERACQILQQWQQSPEKAKMQLSINVSAKQFQQPEFVEQVQL 687

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ K    P R+KL  +ES++M +       + +L+++GI   LDDFGT  S LSYL  I
Sbjct: 688 LVEKYEIRPHRLKLELTESLLMDDISSVTNKIKQLKRLGIEFALDDFGTGYSSLSYLMQI 747

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFDT+K + S +    +  ++  I+ +II + ++++  I+A+ +  E     L R+ CD 
Sbjct: 748 PFDTLKIDVSFVRNMLDSMEKAQIVYTIIQLGESLKLNIVAEGVETEEQFNYLARLNCDT 807

Query: 935 IQDSHVASPLGFNSILK 951
            Q    + P+  +  L 
Sbjct: 808 FQGYLFSKPVPESEFLA 824


>gi|27375475|ref|NP_767004.1| hypothetical protein blr0364 [Bradyrhizobium japonicum USDA 110]
 gi|27348612|dbj|BAC45629.1| blr0364 [Bradyrhizobium japonicum USDA 110]
          Length = 887

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 146/621 (23%), Positives = 279/621 (44%), Gaps = 18/621 (2%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           I A  L+    + +    +        +      + + V+ IG  V+   L     ++ +
Sbjct: 276 IVASRLLTGAPLVIVATRSLDATLATWRTQTKFFVTVAVLSIGLLVLTLFLIFRQVTRRL 335

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HIN 459
             + +R   A+      +  +D     +        +  L++  +  P   +   I H +
Sbjct: 336 SLEKQRLDTALNTMTQGLLMFDQDERLIVCNRRYIEMYHLSTD-VVKPGAYFRDVIQHRH 394

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D  +F   +DS+     G +      R           R+  + N  G    ++   +D+
Sbjct: 395 DTGSFDGDVDSYCDGILGSVG-----RTQSAIVETADSRLIEIKNQPGAAGGWLATHDDV 449

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+ ++ E I   A  D LT +PNR      L   +   A  +     ++ ID+D++K +
Sbjct: 450 TERIRADERIAHMAHYDALTDLPNRVLMRGHLERRVAELA--EGKPFAILYIDVDEFKGV 507

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VGD++L  +  R+   +   D++ARL G+ F I+     +  ++   A  +  
Sbjct: 508 NDSLGHEVGDELLRQVANRLRACVSGNDLVARLGGDEFAIVKAGTRDQAELTALAETILN 567

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P+N   +E+   ASIG A          ++LK A+LAMY AK  G      F    
Sbjct: 568 ALRAPVNCKGQEVPTDASIGIAIAPDHGDNLDDLLKRADLAMYAAKSEGRRTFRVFVPEY 627

Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               R+   ++ DL  A+   E  + Y P++ L    + G EAL++W HP+ G +S ++F
Sbjct: 628 DAKARLRRQLELDLRQALARGEFEVHYQPLVDLAANVVTGCEALLRWHHPERGMVSPADF 687

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L++   +  SW        I I +N++        L   + A 
Sbjct: 688 IPVAEDTGLIGEIGEWVLKQACTEAASWP-----GDIHIAVNVSPVQFRSKTLALKVAAA 742

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++++  +P R++L  +E+V++ + E +  +L +LR++G+ + LDDFGT  S LSYL   P
Sbjct: 743 LAESGLAPGRLELEVTETVLIRDDEEALTILQQLRELGVRIALDDFGTGYSSLSYLHRFP 802

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S ++     E    I+++++ MA        A+ +  E   + L ++GC  +
Sbjct: 803 FDKIKIDRSFISDIGEPEDSSPIVQAVVHMAAARRMATTAEGVETEAQREVLRQLGCSQM 862

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    +  +    + +LL  +
Sbjct: 863 QGWLFSPAVPAAKLKRLLSAQ 883


>gi|264678139|ref|YP_003278046.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262208652|gb|ACY32750.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 809

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 149/635 (23%), Positives = 274/635 (43%), Gaps = 15/635 (2%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               KG    V +    +   +           R        AL   + + V  +     
Sbjct: 181 MALAKGDPLPVFMDVGSLPALVKQALQHQHARGRSQLHFHAQALAIPVSITVHSLQQPDG 240

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           Q         + +    +     +     +    W         + TP  A ILG   G 
Sbjct: 241 QAQPRLLITVEDLRKQEQLNRELLNAQEVANIGTWLSYFDGKP-SITPQAARILGWPVGQ 299

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 + L  +H  DR          +    G   +E R++       W+        +
Sbjct: 300 -PFEYADLLGCVHAEDRAYADAQWKKGLA--TGHYAFEMRIQDGT-SVRWVDALGTIEHD 355

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G  +R  G   DITE+K++   +   AF D LTG+PNR   +D    +LD++      
Sbjct: 356 VTGKPVRGYGTLLDITERKRTERRMEKLAFFDALTGLPNRFHGIDLAQRLLDIAGQRGQ- 414

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           + TV+ +D+D++K+IND  G  VGD++L  + RR    L    ++ARL G+ F + + + 
Sbjct: 415 QATVLFVDLDRFKEINDSQGHLVGDNLLAEVARRFERTLGGEGVVARLGGDEF-MFVHTL 473

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  +  ++A P+ + +    V AS+G A + +   +  E+L+ A++AMY A
Sbjct: 474 AEGNDTMALAHQVCSTLASPMRVDDLCFEVGASVGVALYPTHGHSVDELLQRADIAMYQA 533

Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +GG + + +        +  I     L  A+  S L L + P I L    + G+EAL 
Sbjct: 534 KTQGGGNCQIYDAQMGHRLQRRIALGAKLEEALAQSRLELHFQPKIALDSYALYGVEALA 593

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   +WG +S +EF+ +AEE  +I A+  + L+  AR   +W       P  I +N+++
Sbjct: 594 RWHDEEWGWVSPAEFISVAEERGLIIALGDWSLDAAARQWRAWSSAGIAQPPVIAVNVSA 653

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             ++ +   E   A++     SP  I+L  +ES +M +P +++ +  +L + G +L++DD
Sbjct: 654 AQMMSDSFSERALAIMRAHGVSPRCIELEITESALMHDPAKAKRVASQLVEQGFTLSIDD 713

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+ L   P   +K + S + G       +AI+ ++I +A  ++   +A+ +  
Sbjct: 714 FGTGYSSLARLQSFPVSRLKIDMSFVRGMLSEPGSLAIVTAVIGLAHALKLRTVAEGVET 773

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
           +  + +L  + CD +Q    +  +    + +  L 
Sbjct: 774 QSQLDKLRDLHCDEVQGYLFSKAVPAAELARDWLT 808


>gi|296504030|ref|YP_003665730.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296325082|gb|ADH08010.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 909

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 163/760 (21%), Positives = 311/760 (40%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 162 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 217

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 218 YLYFYLQDDLSERSVIFLRCLYRVFLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 277

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 278 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 331

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 332 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 391

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 392 GKESAALIGKEC--FSIFLDEDKSELEVAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 448

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 449 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 507

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 508 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIVGDEFA 566

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 567 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 625

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++
Sbjct: 626 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVI 685

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 686 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 744

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 745 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKALKSYGV 804

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 805 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 864

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 865 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIGFLS 904


>gi|107026660|ref|YP_624171.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           cenocepacia AU 1054]
 gi|116692150|ref|YP_837683.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           cenocepacia HI2424]
 gi|105896034|gb|ABF79198.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           cenocepacia AU 1054]
 gi|116650150|gb|ABK10790.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           cenocepacia HI2424]
          Length = 749

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/568 (22%), Positives = 247/568 (43%), Gaps = 11/568 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             ++ +    E   L V    + +         + + P    ++ +    +   +   + 
Sbjct: 181 RIARQLARSEEHHRLVVNSLSEGILVISREGVVIASNPSANRMMRVKGELVGRRLSTVIL 240

Query: 455 YIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510
                D    D         +      L Y      AD    W+     P+         
Sbjct: 241 RKLREDGTPIDPHDWPSRRALETATPMLDYTVGFGLADGDIIWVRGNAVPIVRPGETQAD 300

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVM 569
             +   NDI   +++ + +   A +D LTG+ NR+   DR+  +     A     R  ++
Sbjct: 301 SVLVSFNDIGPVREAQQQLRYMATRDALTGLYNRRWLGDRMRELFCAHDAAAGPARVAIL 360

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+  +KK+ND  G   GD +L S+  R+    +    L R+ G+ F I++   ++  +
Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAARLAACGEGRYALTRVGGDEFVILVDDCDDPDR 420

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           ++  A  + ++IA P  +   E  +  SIG +        +  +++NA+ AMY AK RG 
Sbjct: 421 LSVLAREVIEAIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGR 480

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           NH   F        +    I++ L  A+ +  L L Y P++       VG EAL++W  P
Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALASDLLRLAYQPVVDARSGRTVGAEALLRWTSP 540

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +    
Sbjct: 541 ELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-H 598

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L E +   +++T   PS ++L  +E V+M + +    +L  L  + + +++DDFGT  
Sbjct: 599 EGLVESVGRCLAQTRLDPSALELEITEGVLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  +    
Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSW 718

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L ++GCD  Q    + PL  +   + L
Sbjct: 719 FLQQIGCDMQQGYLFSRPLDASDYARRL 746


>gi|95931252|ref|ZP_01313971.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132688|gb|EAT14368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 764

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 132/499 (26%), Positives = 247/499 (49%), Gaps = 16/499 (3%)

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            ++    ++     + R R  ++      I   P+ N NG     +  A +IT++ +   
Sbjct: 269 FETVRRTQQPVRILQHR-RDKEDTLSIYEIEASPLIN-NGQFDGMVSTARNITDRLRLEA 326

Query: 528 -------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                   +L  +  D LT +PNR  F +RL   +  +   +     ++ I +D++ KIN
Sbjct: 327 SLDEKESRLLYMSNHDLLTNLPNRVLFRNRLNQAI--ARNHEGNHVVLLFIGLDRFTKIN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG  +GD+ L     R    L    ILARL G+ F +I+    +    A  A  + + 
Sbjct: 385 ESLGREIGDNTLTQAAERFHNCLAENQILARLGGDEFAVIMEDCRHPQDAAKTAKKLLEQ 444

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI++   EI +TASIG +S+     +   ++ +A++AM  AK  G +  + F     
Sbjct: 445 LIEPIHVQPNEIYLTASIGISSYPQDGESPKTLMSHADIAMTRAKSEGKDRYQFFEREMT 504

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           ++ +    ++ DL  AV  +EL + Y P I+L  ++I G+EAL++W HP+ G IS ++F+
Sbjct: 505 QTTKRVFELENDLRKAVARNELRVYYQPQIQLDSQQITGMEALVRWQHPQRGLISPADFI 564

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I +I  ++L +  + +  W DQ   P + + +N++        L   +   +
Sbjct: 565 PLAEETGLIVSIGEWVLRQACQQVAMWHDQGL-PAVTVAVNLSPLQFRHKALVRNVAKTL 623

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T  +P+ ++L  +ES++M + ++S   +  L ++G  L +DDFGT  S LSYL Y P 
Sbjct: 624 KETGINPACLELEVTESMIMDSIDKSTATMIELTELGAGLAIDDFGTGYSSLSYLRYFPL 683

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +    S E   A+  S+I +A ++   ++A+ I  E  ++ L +  C   Q
Sbjct: 684 TKLKIDKSFIERVTSDEHDAALATSVIALAHSLNLKVVAEGIEHEDQVQFLVKRSCHQGQ 743

Query: 937 DSHVASPLGFNSILKLLKE 955
               + P+    + +LL++
Sbjct: 744 GFLFSRPVPAEDMEQLLRQ 762


>gi|283852458|ref|ZP_06369727.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
 gi|283572196|gb|EFC20187.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio sp. FW1012B]
          Length = 712

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 147/584 (25%), Positives = 260/584 (44%), Gaps = 24/584 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW------DIVRD--RVTTTPDIAT 436
           T ++  L      Q +    +R      G  +           D   D   +   P    
Sbjct: 135 TAVEVALFKHRTEQELKKSEQRYRELFAGMLNAFLLLEHMPAEDGPGDFRILDANPAFEK 194

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + GLAS ++ G     +  I       +   L+      R      F    +D   +++ 
Sbjct: 195 MTGLASSAVIGRT---MRGIFPGIEAFWLETLEEAASSGR---SVRFENFLSDCNLYFLA 248

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               P         +      D+TE+K   E +    F D LTG+PNR   LDR+T  ++
Sbjct: 249 QAYSP------QPGQVAVALEDVTERKHGEERLRYRTFHDALTGLPNRALCLDRITRAIE 302

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +    N    ++ +D+D++K IND LG   GD +L  +  R+   ++  D +AR+ G+ 
Sbjct: 303 RARRRANYIYALLFLDLDRFKLINDSLGHLAGDALLRRVADRLRREVRQLDTVARVGGDE 362

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++L    +         A+R+ + +P  +  R+  +TAS+G     +      E+L+N
Sbjct: 363 FVVLLEEIASPADALRIVKAIREHLRVPFTVEGRQFYITASMGVVLGPADYDRPEELLQN 422

Query: 677 AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A +AM  A+  G   V  F  S        + ++ +L LA++  E  + Y PI  L    
Sbjct: 423 AAIAMGSARTAGRGRVRVFDWSMRERAERVMDLETNLRLALDRGEFVVHYQPIFCLKTLA 482

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPP 793
             G+EAL++W       +   EF+  AE+  +I  +   +L    R  + WR       P
Sbjct: 483 PRGVEALVRWKRSDGELVPPGEFIPAAEQSGLIIPLGALVLAEACRAFVRWRQTVLGQKP 542

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            F+ +N++++     EL + +   + +     + +KL  +ES++M +PE + L L  LR+
Sbjct: 543 FFMSVNLSARQFTQPELVKQVVTTLRRESMPAADLKLEITESILMEHPESAMLKLRGLRE 602

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETT 912
           +G+ + +DDFGT  S LSYL   P DT+K +   ++G  E     I+RS++ +A N+   
Sbjct: 603 LGVGIGIDDFGTGYSSLSYLQRFPIDTLKIDRGFVSGMEEHGNRVIVRSVVSLAHNLGYE 662

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++A+ I     + +L  +GCD  Q  + A PL  + +L+LL   
Sbjct: 663 VVAEGIETMGQLDDLAALGCDLGQGYYYARPLVEDRLLELLGRH 706


>gi|306842502|ref|ZP_07475153.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306287358|gb|EFM58838.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 703

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + +   A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|332526777|ref|ZP_08402879.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111180|gb|EGJ11212.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 780

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/586 (24%), Positives = 266/586 (45%), Gaps = 19/586 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++ +            + +R +L V  + ++V   D              I G ++  +
Sbjct: 194 TMRALREQLQRLAVQTRELKRLALVVSRTDNVVVVTDPGGRIEWVNDAFTRITGWSADEV 253

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   +   +   N   +     ++    R  R   E   R       W  I ++P+ + 
Sbjct: 254 RGRAVDGALHSPRNASADVAPFHEALRSQRPARF--EVLTRRKHGGEVWFAIDMQPLFDE 311

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +     ++ +A D+T +++  E +   A  D LTG+PNR + + RL   +D +  +    
Sbjct: 312 DSSHRGFVSLATDVTARRELGERLRLAASTDALTGLPNRAAAIQRLERAIDHARRNPGYG 371

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---------ILARLSGNR 616
             ++ +D D++K+IND LG + GD++L  + RRI   L+  D           ARL G+ 
Sbjct: 372 FALLFMDFDRFKQINDTLGHSEGDELLKQMARRIELALRPGDAVARAGGEHTAARLGGDE 431

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI--TSSEML 674
           F ++L               + + +A P  +  R +  + SIG     +     T  ++L
Sbjct: 432 FIVVLDGVCRVEDARAITDRLLRDLAEPYTINGRWVQSSVSIGVVVAAAGAESRTPDDLL 491

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+ AMY AK  G +    F   +    S ++ I+ DL  A+   EL++VY PI+ L  
Sbjct: 492 RDADTAMYEAKRAGRDCCMVFDPAMHERVSQQLQIENDLRRALPEGELFVVYQPIVALPG 551

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-M 791
               G+EAL++W HP  G ++   F+ +AEE+ +I AI   +L         WR +    
Sbjct: 552 GRATGVEALVRWRHPTRGVLTPGGFIGVAEEVGLIDAIGEHVLRESCACFADWRARLGSR 611

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P  + +N++   L    L E + A++++    P  ++L  +ES+   + E  +  L +L
Sbjct: 612 APRQLNVNLSRAQLRSPALPELVGAILAEHGLPPQVLQLEVTESLAAQD-EVVQATLRQL 670

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909
           +++G+ L LDDFGT  S L+ L  +P DTVK + S +  +   E    ++ + I +A+++
Sbjct: 671 KQLGVRLALDDFGTGYSSLACLHLLPVDTVKIDRSFIAHAETIEYHRVLIEATIRVAQSL 730

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   +A+ I        +TR+ CDY Q      PL   ++ + + E
Sbjct: 731 DMATVAEGIETAGQAALMTRLRCDYGQGWLYGRPLEAAALERRIAE 776


>gi|296506560|ref|YP_003667794.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296327147|gb|ADH10074.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 785

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 163/759 (21%), Positives = 309/759 (40%), Gaps = 30/759 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 38  ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 93

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPMVTASIARITLASI 318
           +L+ YL  +     V ++       +  +   +           Y ++  +     L   
Sbjct: 94  YLYFYLQGDLSERSVIFLRCLYRVLLLFIAIAATIPKNTSSKRNYFIINPTFGEKLLGIF 153

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +         L   L + 
Sbjct: 154 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKE------LTKTLKVF 207

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 208 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLL 267

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S ++ G            D+      +          LQ   +     +   W  + 
Sbjct: 268 GKESAALIGKEC--FSIFLDEDKSELEVAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VT 324

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  E I   AF D +T I NR  F   L   +  +
Sbjct: 325 IVPIM-IEGQTFGSYVMVKDITRMKQQQEEINYLAFHDTVTEIGNRIFFQQELDRSIKRA 383

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 384 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDKVLKEVAKRFRTCLSPTIPLARIVGDEFA 442

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 443 IIVHNQT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 501

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A++N+EL+L+Y P I     + +
Sbjct: 502 IAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIKNNELFLLYQPQIDSKAGKFI 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  + +  W        + +
Sbjct: 562 GAEALIRWQHPELGLISPFEFIPIAEETTQIISIGKWTLQKACQQLKEWHSA-GFSNLKM 620

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + + + I +     + I L  +E + M +   +   L  L+  G+
Sbjct: 621 GINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLELTERIAMVDERETLSKLKALKSFGV 680

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 681 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGDEIIQTIISLAHTLNMKVI 740

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ I  +  +  L R  C  IQ  + + P+  +  +  L
Sbjct: 741 AEGIETKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFL 779


>gi|254701017|ref|ZP_05162845.1| diguanylate cyclase GGDEF domain-containing protein [Brucella suis
           bv. 5 str. 513]
 gi|261751542|ref|ZP_05995251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 5 str. 513]
 gi|261741295|gb|EEY29221.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 5 str. 513]
          Length = 703

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 VFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|197118094|ref|YP_002138521.1| response receiver sensor diguanylate cyclase/phosphodiesterase
           [Geobacter bemidjiensis Bem]
 gi|197087454|gb|ACH38725.1| response receiver sensor diguanylate cyclase/phosphodiesterase, GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 869

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 131/445 (29%), Positives = 230/445 (51%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+   + +   A  D +T +PNR S + RL   L+L+    + R  V+ ID+D++K IN
Sbjct: 424 EQELHEQRVEYLAHYDMVTKLPNRFSLMARLGQALELAKR-FSSRLAVIFIDLDRFKNIN 482

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  +  R+ + ++  DI+ARL G+ F ++L   N+++  A     ++++
Sbjct: 483 DSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISAAHAVRKIQQT 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++    +   E+ +T SIG + + +   T  E++K+A+LAMYHAK  G N  + F     
Sbjct: 543 LSQGYTVESHELNITPSIGISVYPTDGETVQELMKHADLAMYHAKSAGRNSYQFFTQEMN 602

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + +  +  + DL  A+E  EL L Y P I L   ++VG+EAL++W HP  G ++   F+
Sbjct: 603 LTVQARLVLESDLRTALERDELMLHYQPQIDLKSGDVVGVEALLRWRHPVRGAVAPDVFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I +I  F L+     +  W  Q    P+ + +N++++    + L   +  ++
Sbjct: 663 PVAEDTGLILSIGEFALKSACEQLALWISQGLG-PLRMAVNLSARQFKQSNLPSLLADIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + T  +   ++L  +ES  M +P  + L L  LR++G+ L +DDFGT  S LSYL   P 
Sbjct: 722 AATGVAAHLLELEITESSAMDDPNSAILHLRTLREMGVKLAIDDFGTGYSSLSYLKLFPV 781

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S + G         I  + I +A N+   ++A+ +  E   + L    CD +Q
Sbjct: 782 NRLKIDRSFVRGIDTDSEDAEIAAATITLAHNLGKEVVAEGVETEAQCRFLKGQQCDILQ 841

Query: 937 DSHVASPLGFNSILKLL-KERFPLV 960
               + PL    I   L   R P  
Sbjct: 842 GYFFSEPLSAAGIASYLAANRRPPT 866


>gi|302538187|ref|ZP_07290529.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302447082|gb|EFL18898.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 529

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 128/509 (25%), Positives = 232/509 (45%), Gaps = 16/509 (3%)

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +D  +   +    V   R   + E      D    W  + +  + +++G     + + 
Sbjct: 15  HPDDTPHVWRMYGELVRGEREHYRVEKPYYRHDGTVLWTNLTVSLLRDADGVPQYQLALM 74

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D TE++     +   A  D LTG+PNR  F +RL   L         R  +  +D+D +
Sbjct: 75  EDTTERRLLNLRLRYEATHDALTGLPNRTLFFERLEKAL---GGPPGSRFGLCYLDLDGF 131

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILI-----SENNSLKI 630
           K +ND LG + GD +LV +  R+        +++ARL G+ F  +        E+   K+
Sbjct: 132 KTVNDSLGHSAGDRLLVEVADRLQSCATGPGEVVARLGGDEFVALTTSPAGSGEDPGEKV 191

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            D A+ +  +++ PI L  RE++V  SIG     + + T +E+L++A++ MY AK  GGN
Sbjct: 192 TDLAVRILSALSTPIRLEGRELSVRGSIGIVEGCAGERTPAEVLRSADITMYRAKAAGGN 251

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             E     +         +   L  A+E  E ++ Y P++ + D  + G EAL++W HP+
Sbjct: 252 RFEFADAEADARAITRHGLTNALPAALERGEFFIEYQPLVHMHDGSVHGAEALVRWSHPQ 311

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           +G +    F+ +AE   +I  +  ++LE   R   +W+ Q     + + +N++   L   
Sbjct: 312 YGVLGPDRFIPLAERTGLIVPLGRWVLEESVRQARTWQRQHGGAALRVNVNLSPTQLHHP 371

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L      ++  +  +P  + L  +ES ++G  +     L RL  +G+ + LDDFGT  S
Sbjct: 372 GLVADTVRVLEASGLAPGALCLEVTESALIGADDELLEPLRRLAALGVDIALDDFGTGYS 431

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
            L+ L  +P   +K + S   G          + I+  I+ +A ++E  +  + +     
Sbjct: 432 NLANLRRLPVSVLKLDRSFTQGMQQQPADPVDVKIVEGIVSLAHSLELAVTVEGVETGAQ 491

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +L  +GCD  Q  + A P   + I  L
Sbjct: 492 AAQLRALGCDTAQGWYYARPGAPDRIHAL 520


>gi|253997601|ref|YP_003049665.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253984280|gb|ACT49138.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 865

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 295/690 (42%), Gaps = 28/690 (4%)

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
           +   +    I  + +   +    P +           + +     + +  + G       
Sbjct: 188 RCYQLLAWIILFVCVELIIVSAVPDLNKQFILSMFVILPMLIWASMSFGLVGG----SFF 243

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--FSQ 398
           +     I +W        +    +  +   +      +V L+   ++   L +       
Sbjct: 244 VIILSSIAVWVTSQG---SGNFYSHDLSEGVFSLWTFMVALVVTMLLISALQSERNLAHM 300

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            I  + ++    + G+ D +   D     V   P    I G     + G   +    I  
Sbjct: 301 TIQKNDKKLRSVIDGAFDAIVTIDSAGLLVEFNPAAERIFGYKKEDVLGK--SMPDLIIP 358

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRV----RAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               N                 +  R+      AD     + + +  + ++N  +    G
Sbjct: 359 ARYRNAHHAGHQQYKMTGVTHIFNQRIELVGMRADGSEFPIELTLTALKDNN--LSLVTG 416

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DI+EQK++ + I   A+ D LT +PNR+   DR    + ++         ++ ID+D
Sbjct: 417 FVRDISEQKRARQEIENFAYYDALTSLPNRRLLADRYQHAMSIAQRA-KTYCALLFIDLD 475

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629
           K+K +ND  G  VGD +L+ +  RI   ++  D +ARLSG+ F +IL S + +      +
Sbjct: 476 KFKVLNDTKGHDVGDQLLIEVAHRIQHTVRAGDTVARLSGDEFVVILESLDQNASIAYQQ 535

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +++ A  +   +     L   E   +ASIG   +  + +T  + L++A+ AMY +K  GG
Sbjct: 536 VSEIAQKLLAELNRNYYLSLFEFATSASIGVTLFNDNALTFEDHLRHADTAMYLSKDSGG 595

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +   +         ++  L LA+ N ELYL Y PI+ +  +++V  E L++W HP
Sbjct: 596 NTYRFYDQLTQESIEKNFALEAALGLALANQELYLNYQPIVNVA-KQVVAAEVLLRWSHP 654

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             GN+S  EF+ IAE+  +I  I  ++LE+    + +W     +  I + +NI++K  L 
Sbjct: 655 TLGNVSPVEFIPIAEKSNLIIKIGHWVLEQACEQLKTWEASPVLGQIKLSVNISAKQFLY 714

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               + ++ ++++T  +PS +KL  +E+ V+ N +     +G LR++G+ + LDDFG   
Sbjct: 715 INFVQELREILARTGINPSLLKLELTETAVIDNMDDVIHKIGILRQMGVRIALDDFGIGH 774

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L YL  +P   +K + S +    +     AI++ ++ + K I   I+A+ +      +
Sbjct: 775 SSLVYLKKLPVTQIKIDQSFVHDVLTDSNDAAIIQMVLAVGKTIHCDIVAEGVEQVEQFE 834

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L   GCDY Q  + + P+   +  + +  
Sbjct: 835 LLREFGCDYFQGYYFSRPVNVANFEQFVSA 864


>gi|148558900|ref|YP_001258245.1| sensory box protein [Brucella ovis ATCC 25840]
 gi|148370157|gb|ABQ60136.1| sensory box/GGDEF domain/EAL domain protein [Brucella ovis ATCC
           25840]
          Length = 703

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 246/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD++L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDELLQKVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A        + 
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNTD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|72161014|ref|YP_288671.1| diguanylate cyclase/phosphodiesterase [Thermobifida fusca YX]
 gi|71914746|gb|AAZ54648.1| diguanylate cyclase/phosphodiesterase [Thermobifida fusca YX]
          Length = 901

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 152/754 (20%), Positives = 297/754 (39%), Gaps = 25/754 (3%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW--RACSEIALSSSLIIFLFMYLHWNR 277
                A V      + F  L + +   +G +        ++IA+   L   +    H  R
Sbjct: 144 SYVCAAAVFSTVWLVLFQPLYQELGGNAGAMAFALVYPVTDIAVVCLLAPLVLTSPHSTR 203

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
               +    F  I    ++  +        A      +  +       I     +    A
Sbjct: 204 RAVLLAMGAFVTICAADLIGAVGRLSGEAVAGGIEYPVRLLGFLLLGAIPAVVKRKPGTA 263

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--------LIGFTVIQH 389
              I    L  +      +         I    L    +  V+        L+    +  
Sbjct: 264 PRRITGRGLYRVAPEIAAVTALSTAAVVITIAGLRAEGIAPVLPLTAGSAVLVLLVRMVG 323

Query: 390 VLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           ++        I    ER        SGDI+   +        +P    + G   G     
Sbjct: 324 LMDETTVLARIVQTRERHLHDLAEHSGDIIVILEEDCRICYMSPGAGAMFGYRDGDPL-L 382

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                  +H  D  +                +   RVRAAD  +      +  +    G+
Sbjct: 383 AEPVTSLVHPEDLPDLAAAAAELRNG-AESARVRARVRAADGTWRHTTSTVS-VYERPGE 440

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR--- 565
            +R++    DI+ Q +  + +    F D +TG+PNR    +R+  +L   A  +  R   
Sbjct: 441 PVRFLLTTRDISAQVELQKQVDHLTFHDGVTGLPNRAYLEERVREVLSGHAEAEGGREQP 500

Query: 566 -PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+ +D+D +  +ND  G A GD +L  +  R+  +L   D LAR   + F  ++   
Sbjct: 501 EVAVIFLDLDGFTAVNDSAGHAFGDYLLAQVGHRLRAVLDTGDTLARWGSDEFVALVEDR 560

Query: 625 NNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  + D A  M + I   P  + +R++ VTAS+G A +    I  +E+L+NA++AM  
Sbjct: 561 PRADSVVDLAERMIQVIEGEPFPVADRDVIVTASVGVA-FAEPGIDGAELLRNADMAMAR 619

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GG  VE +   + +   +R+ ++ +L  A+      L Y P++ L   ++  +EAL
Sbjct: 620 AKEHGGGRVEVYAAHMHAQVVERLELQTELRQALAEHAFVLEYQPVVSLETSQVTAVEAL 679

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W       +   EF+  AEE  +I  +  ++L    + +  WR       I + +N++
Sbjct: 680 VRWRRADGSLVPPEEFLGPAEESGLIVPLGEWILREACQKVAVWRATTG-LDIGLSVNVS 738

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ +L     + ++ +++++  +   + +   E V++ NP  +   L +LR++G+ L +D
Sbjct: 739 ARQVLSAGFVQSVEEVLAESGLNAEALTVEVDEEVLLENPVVAAEHLTKLRELGVRLAVD 798

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFG   + LS+L  +  D +K + S +           + R++I + +++   ++A+ I 
Sbjct: 799 DFGMGHASLSHLRRLRVDEIKIDPSFVRDLDADETVTLLTRTLIRLGQDLGVQVVAEGIE 858

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               ++ L  MGC Y Q   V  P+    +  L+
Sbjct: 859 HPWQLRRLREMGCAYGQGFLVGRPMDAAGVEALV 892


>gi|288553530|ref|YP_003425465.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4]
 gi|288544690|gb|ADC48573.1| sensory box/GGDEF protein [Bacillus pseudofirmus OF4]
          Length = 573

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 136/563 (24%), Positives = 262/563 (46%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
           +Q  FSD E++ +++   S  ++   +   + V        +       +       L  
Sbjct: 18  TQAGFSDLEKEYMSLFEHSPYLLLVINAAGECVRVNEAGLHMNEWTRKEIINQKIEHLTD 77

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I+  D   +  ++   V +       ++      + + +  I       + G +   +G+
Sbjct: 78  IY--DEKAWDEVMSGNVSHSEKAGSVDY-----THSYVYTWIPTIIEHKAAGAV--VLGM 128

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                E  +  + +   A +D LT +PNR+ F++ L   L  +A     +  V+ ID+D+
Sbjct: 129 KKSAAECSEQQDEVYRLANEDPLTNLPNRRCFMNYLENKLLHAA-SSKEKLAVLFIDLDR 187

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG   GD VL  +  R+   L    ++ARL G+ F +++       +      
Sbjct: 188 FKYVNDTLGHLFGDRVLKHIAERLQAHLPEKSMIARLGGDEFVVVMTDVKEKEEPVSLTE 247

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I  P+ +   E T+T S+G A    + I +  +L +A+ AMY AK +G + +E +
Sbjct: 248 DLLTIIREPLIMDGFEFTLTGSVGIALSPENGIDAEALLTSADAAMYRAKAKGSDRLEVY 307

Query: 696 RVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               ++       ++ DL  A++  E  L Y P   L   ++ G E L++W HP  G IS
Sbjct: 308 NRDVYQEFSRYFHVENDLRKAIDRGEFALYYQPQFCLESGDVCGEEVLVRWKHPIEGTIS 367

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAEE  +I  I  ++L    R    W ++   P + + +N++ K  L + +   
Sbjct: 368 PGEFISIAEETGLIIPIGEWILREACRQKAKWINE-GYPKVPMSVNLSLKQFLQHNIVHT 426

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T   P  + L  +ESV + + +R+  +L +L K+G+ ++LDDFGT  S L Y+
Sbjct: 427 IEKILKETKLPPEYLDLEITESVTV-DLDRTLDILNQLIKVGVRISLDDFGTGYSSLQYV 485

Query: 874 GYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           G +P   +K + S +    + +   AI+  II + +++E  +IA+ +  +  +  L + G
Sbjct: 486 GQLPVHELKIDQSFVKKIGKGKEGEAIISMIIHLGRSLELKVIAEGVETKEQLDFLQKQG 545

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD +Q  + A PL      + L+
Sbjct: 546 CDLVQGYYYAKPLSTEEYEQYLR 568


>gi|73539344|ref|YP_299711.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Ralstonia eutropha JMP134]
 gi|72122681|gb|AAZ64867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Ralstonia eutropha JMP134]
          Length = 1076

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 131/592 (22%), Positives = 251/592 (42%), Gaps = 19/592 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               ++  +    +  Q       R +     +   V  +D              +L    
Sbjct: 462  SLWILTDLDELWHARQQAAVQAGRYASLADHAPMCVITFDEDGRITDINRTGQHMLWYPG 521

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-------------QYEFRVRAAD 489
             +    IR    ++     +  R +           L             + E+      
Sbjct: 522  PAQGAGIRYADLHVADELAERARDLTRELGETIAPGLPALVAKARLGLVDEREWTWVRKG 581

Query: 490  NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                 + + +R +   +G   +Y  IA D+TE+ +  E I   A  D LTG+PNR    +
Sbjct: 582  GSRVPVQVTLRELPAEDGQPRQYQAIACDLTERHRVDEYIRHLALHDALTGLPNRAELTE 641

Query: 550  RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            R   +L  +      R  ++++D+D +K IND LG  VGDDVL ++  R+   ++  D++
Sbjct: 642  RCEAVLLHARRHGE-RVALLLLDLDHFKHINDSLGHPVGDDVLRTIADRLKAAVRQGDLV 700

Query: 610  ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            AR+ G+ F ++L    +  +    A  +   ++  + +  + + VT S+G A + +   +
Sbjct: 701  ARMGGDEFAVVLGGLRHDTEAELAASKILARVSEALEIGGQRLRVTPSLGIAMFPADGES 760

Query: 670  SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPI 727
             +++LK+A+ A+Y AK  G   +  F      +   R+ I+  L  AV+  E  L Y PI
Sbjct: 761  LTDLLKSADAALYAAKQGGRAQLRRFASEMAEASLARLTIEGLLRRAVDEQEFTLRYQPI 820

Query: 728  IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            +      + G+EAL+ W  P+ G +  SEF+ IAE+  +I A+  + L     DI + R 
Sbjct: 821  VDTSTLAVTGVEALMAWHTPERGMMQPSEFIPIAEQCGLIGALGEWALATACSDIQALRT 880

Query: 788  QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                  I + +NI+   L      + +   + +    P  + +  +E +++   E +   
Sbjct: 881  ALGR-DIEVAVNISPLQLRQPGFPDLVARTLQQAGLPPGSLTIEVTEGILVEGGETTIDT 939

Query: 848  LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905
              RLR++G+ L++DDFGT  S L YL  +P   +K + S +           +  +II +
Sbjct: 940  FLRLRELGVQLSIDDFGTGYSGLHYLTRLPISRLKIDKSFVDDVARPGHDQVVAAAIIAL 999

Query: 906  AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               +   ++A+ +      + L   GCD +Q       +G +++ ++L   F
Sbjct: 1000 GHQLHLKVVAEGVETMAQFEFLRAQGCDALQGYLFCRAVGPDTLREVLDSGF 1051


>gi|120610219|ref|YP_969897.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120588683|gb|ABM32123.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 687

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/626 (20%), Positives = 254/626 (40%), Gaps = 20/626 (3%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           +  W            + +  L  D     +   +  +    G  ++   +        I
Sbjct: 64  LAFWSQDLAGLRAGIHSYSGMLRPDGSLVPVDRRVAAVESPEGMPLLVLGMLDRSEQASI 123

Query: 401 FSDGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + ER        +  + D +   D+          +A +  +    +       +   
Sbjct: 124 QDELERLLSELRATLDSAADGMLVCDMGGRVRAFNQRLAWLWNMPDDLLVRRDDAAVEAH 183

Query: 457 HIN---DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                 D D +R  L     +          +R        +  R  P   S+G  +  +
Sbjct: 184 MAAQVTDADAYRARLLGIAQFPEEETLDILHLRT--GTV--IERRSVPQM-SHGRPMGRV 238

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D+T Q  + + I   A+ D LTG+PNR      + + L+ +         ++ ID+
Sbjct: 239 YSFRDLTLQHAAQKRIEQLAYSDVLTGLPNRLLLSRCVASALETARAQGGG-FAILFIDL 297

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG   GD VL  + +R+   L+  D+L RL G+ F + L  E ++      
Sbjct: 298 DRFKIINDSLGHLFGDRVLQLVAQRLRGCLRQNDMLCRLGGDEFVLHL-DEGDASMAEAV 356

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + + +  P  L     ++  SIG A       T  +++K A+ AMY  K RG     
Sbjct: 357 ACRILEEMRQPFMLDGMGFSIQCSIGIALHPRDGETLDDLIKQADTAMYRVKERGRGSYG 416

Query: 694 SFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +          R+ ++  +  A++  +  + Y P + +    +VG EAL++W+ P  G 
Sbjct: 417 FYHPQMNADMLSRMQLEHAMRQALDRGDFAVHYQPQVEMASGRVVGAEALLRWNDPGLGA 476

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+ +AEE   I  +  ++LE+  R+   W       P+ + +N+++ +   +   
Sbjct: 477 VSPGVFIPLAEESGYIVTLGAWVLEQAIREAAEWMRAG--TPLVVAVNVSALEFRQSGFV 534

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E + AL+       S ++L  +E++++ + +     L  L ++G+ L++DDFGT  S L+
Sbjct: 535 ERLVALLRSHGLPASLLELELTETILLQDAQEMAQRLAALAELGVGLSIDDFGTGYSSLA 594

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +    +K + S + G    E   AI+ +I+ + + +   ++A+ +      + L  
Sbjct: 595 YLKKLRIHKLKIDQSFVRGLPDDESDRAIIEAIVHIGRALRIRVVAEGVETPQQREALQA 654

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           + C Y Q   VA  L   +   L+  
Sbjct: 655 LQCHYFQGFLVAPGLPAEAFRALVAR 680


>gi|228988980|ref|ZP_04149011.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228770742|gb|EEM19276.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 782

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 159/784 (20%), Positives = 319/784 (40%), Gaps = 40/784 (5%)

Query: 192 RGIIIGVASLLAIFLT------IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
             I++     L  +L       I ++      L       + ++  + +  G        
Sbjct: 16  LYIVVTAIFTLEWYLFNNPSANILFLSIGDIFLS----FIFPIIDLLLLLLGVSLIFRPA 71

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP- 304
                        +    ++  +L+ Y   +    ++  +         +   ++   P 
Sbjct: 72  IFNAKSKLFIFILVLTGLAITDYLYFYFQ-DVLSNRLVILLRCLYRVFLLFIAIAAAIPK 130

Query: 305 ---------MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
                    ++  +  +  L          +I   +K    +  LI    + F++ +   
Sbjct: 131 NSSSKRNYFIINPTFGKKLLVIFPYLAVVVLIGFTLKEQTSSSTLIMGNCIAFVFVLIRH 190

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
             +  +  +      L   L++    +  TV Q  +     S  +  + ER         
Sbjct: 191 TIVRMQNKD------LTETLIVFNNQLEQTVSQRTMDLINKSNDLVKNQERFKSLYQYHP 244

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           + +   D     +      + +LG  S ++ G     L      D+      +    G R
Sbjct: 245 EPILTIDSNGKVLNINQAGSMLLGKDSAALIGKEC--LSIFLDEDKSELEVAIKK--GRR 300

Query: 476 RGRLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                 + RV+   +    +  + I P+    G       +  DIT  K+  + I   AF
Sbjct: 301 CSSSSLQLRVKNHNEKDIFFWYVTIVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAF 359

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T I NR  F   L   +  +    + +  ++ ID++++K IND LG ++GD VL  
Sbjct: 360 HDTVTEIGNRIFFQQELNRSIKHAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKE 418

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R    L     LAR+ G+ F II+ ++    ++ D    + +    P  + +    +
Sbjct: 419 VANRFRTCLSPTIPLARIGGDEFAIIVHNQT-EQQLLDLCETLFRITEEPFIVNQHSFYL 477

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           + SIG A +    I ++ +L++A++AMY AK +G N V  +    S   + R+ +++DL 
Sbjct: 478 SLSIGIAVYPFGGINTTTLLQHADIAMYSAKKKGNNTVCMYDETLSQKITRRLRLEQDLP 537

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+EN+EL+L+Y P +     +++G EALI+W HP+ G IS  EF+ IAEE   I +I  
Sbjct: 538 HAIENNELFLLYQPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIGK 597

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L++  R +  W        + + IN+++ +    +  + + + I +     + I L  
Sbjct: 598 WTLQKACRQLKEWHS-LGFSNLKMGINLSAIEFEQKDFVQTIISTIEEIGVPANSIDLEL 656

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E + M + + +   L  L+  G+ L++DDFGT  S L+YL   P D +K     +    
Sbjct: 657 TERIAMVDEKETLSKLKALKSCGVHLSIDDFGTGYSSLAYLPLYPIDNLKIPREFVNRIG 716

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +     I+++II +A  +   +IA+ +  +  +  L R  C  IQ  + + P+  ++ +
Sbjct: 717 TSTDGDEIIQTIISLAHTLNMKVIAEGVETKGQLTVLQRNSCYLIQGYYYSRPINKDNFI 776

Query: 951 KLLK 954
           + L 
Sbjct: 777 QFLS 780


>gi|134293314|ref|YP_001117050.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           vietnamiensis G4]
 gi|134136471|gb|ABO57585.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           vietnamiensis G4]
          Length = 749

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 245/572 (42%), Gaps = 21/572 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-- 453
            ++ +    E   L V    + +             P    ++ +    +   +   +  
Sbjct: 182 IARQLVRSEEHHRLVVNSLNEGILVVSRDGVVTACNPSAHRMMRVKGDLVGRRLSTVILY 241

Query: 454 ------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-N 506
                   I  +D  + R ++         +L Y      AD    W+     P+     
Sbjct: 242 KVHEDGTSIAPDDWPSRRALV-----TGASQLDYAAGFGLADGDIIWVRGNAVPIVKPGA 296

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLR 565
                 +   +DI   +++ + +   A +D LTG+ NR+   +R+  +           R
Sbjct: 297 TQPESVLLSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGKRDPVAGPAR 356

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ ID+D +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   +
Sbjct: 357 VAVLFIDLDGFKKVNDTAGHDAGDALLRSVAARLVVCGSGRHALTRVGGDEFVILVEDCD 416

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   +A  A  +  +IA P  +   E  +  SIG +        ++ +++NA+ AMY AK
Sbjct: 417 DPDALAALAREVIDAIAKPFEIANNEYWLGVSIGISVAPRDGDDAATLMRNADSAMYDAK 476

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG NH   F        +    I++ L  A+ +  L L Y P++       VG EAL++
Sbjct: 477 QRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAISSDALRLAYQPVVDARSGRTVGAEALLR 536

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +
Sbjct: 537 WTSPELGPLSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDMMLSVNLSPR 595

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L E +   ++ T   P  ++L  +E V+M + E    +L  L  + + +++DDF
Sbjct: 596 QF-HEGLVESVYRCLALTKLDPRALQLEITEGVLMNDTETVLPMLEALADLNVRISVDDF 654

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  +
Sbjct: 655 GTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVETQ 714

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              + L ++GCD  Q      PL      + L
Sbjct: 715 AQSRFLQQIGCDMQQGYLFDRPLEAADYARRL 746


>gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 853

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/557 (25%), Positives = 261/557 (46%), Gaps = 15/557 (2%)

Query: 404 GERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459
            ER  LA   +  + + +   D      +  P      G +     G   R      H  
Sbjct: 260 EERLLLAAKVIETTTEGIMITDAGGVIESVNPAFCRSTGYSESEAIGNSPRILKSGRH-- 317

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D + +R +  + +    G+ Q E   R    + +   + I  + +S+G   +Y  I +DI
Sbjct: 318 DGEFYRKMWKALLE--TGQWQGEIWNRRKSGELYAAWLTISAIKDSHGRTTQYAAIFSDI 375

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE K++ E I   A+ D LT +PNR  F+DRLT  +  +  +      V+ +D+D++K+I
Sbjct: 376 TEDKRNQERIKHQAYHDALTDLPNRLLFIDRLTQAIAQATRN-CYMLAVLFLDLDRFKQI 434

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G A+GD +L  +  R+   ++  D +ARL G+ F I+L    +    A  A  +  
Sbjct: 435 NDTYGHALGDLLLQGVAGRLRRAVRDSDTVARLGGDEFTILLPQIGSVEDAAKVAQKILA 494

Query: 640 SIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           S+  P +        +T SIG A   +    +  ++ NA+ AMY AK +G NH + +   
Sbjct: 495 SLRQPWSFEGIPSFCITTSIGIAVCPTDGEEAETLMHNADAAMYRAKAQGRNHYQLYTPE 554

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + ++  L  A++  E  L Y P +         +EALI+W HP  G +S +E
Sbjct: 555 LNAWAFERLAMETRLRRALDQGEFVLYYQPKVEAATGNWCAVEALIRWQHPDLGLVSPTE 614

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  I  + LE       +W+D    PP+ + +N++++      L   ++ 
Sbjct: 615 FLRLAEDTGLIVPIGEWCLEEACVRNKAWQDAGL-PPVRMAVNLSARQFQHPNLLAAVEK 673

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + K+   P+ ++L  SE V++   + + ++LG L+ +G+SLT+D +G + S ++ L  +
Sbjct: 674 ALQKSGLPPAWLELEISEEVILRFADLAPIVLGDLKSLGLSLTMDQYGKRDSRITLLQKL 733

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D VK   S +   +        ++++I +A++++  + A  +        LT  GCD 
Sbjct: 734 PIDRVKIAASQVIDLSACHDARKSVKALIALARSLDLHVAADGVGTREQCDFLTAAGCDE 793

Query: 935 IQDSHVASPLGFNSILK 951
           IQ    + PL    + +
Sbjct: 794 IQGHLFSDPLSAEEMGR 810



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 10/154 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++ +L   +  + + +   + S      G+ +   D         P+   +LG +   +
Sbjct: 118 RVRRLLQAQHTEKALKARETQLSAVASALGEGLIVLDAEGRLTFMNPEAERLLGWSLPEL 177

Query: 446 HGPIRNWLPYIH---INDRDNFRT---ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            G   +    IH               +L +       R   E+     D     + +  
Sbjct: 178 LGKKIH--SIIHNRRPEGDPIAEADCLVLKTIGAGETYRSDEEY-FTRKDGALFPVSLVS 234

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            P+   N  I   +   +DI+++KK  E +L  A
Sbjct: 235 TPLR-VNDRITGAVTAFHDISDRKKVEERLLLAA 267


>gi|221212626|ref|ZP_03585603.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD1]
 gi|221167725|gb|EEE00195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Burkholderia multivorans CGD1]
          Length = 749

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 142/640 (22%), Positives = 271/640 (42%), Gaps = 26/640 (4%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           ++   +    A  L   W + F    G+ +           +P+     +L+ I     +
Sbjct: 116 LWDAYRSIALAFGLRACWSVPFEDDTGVVLGAFAVYYRAPRRPSHEETALLLDISNSVGL 175

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             H       +Q +    E   L V    + +         + + P    +L  A G + 
Sbjct: 176 AVHQDR---IAQQLARSEEHHRLVVNSLNEGILVVSRDGVVIASNPSANRML-RAKGELV 231

Query: 447 GPIRNWLPY---------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G   + +           I  +   + R ++          L Y      AD    W+  
Sbjct: 232 GRRMSTVILRKLSEDGTPIAPDRWPSRRALISGA-----PVLDYTVGFGLADGDVIWVRG 286

Query: 498 RIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              P+    +      +   +DI   +++ + +   A +D LTG+ NR+   DR+  +  
Sbjct: 287 NAVPIVKPGDTQAASVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFG 346

Query: 557 -LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                    R  ++ +D+  +KK+ND  G   GD +L S+  R+   ++    L R+ G+
Sbjct: 347 GRDPAGGPARVAILFLDLVGFKKVNDTAGHDAGDALLRSVAARLAACMRGRHALTRVGGD 406

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I++   ++   +A  A  +  +IA P  +   E  +  SIG +        ++ +++
Sbjct: 407 EFVILVDDCDDPEALAALAREVIDAIAKPFAIANNEYWLGVSIGISIAPRDGDDAATLMR 466

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ AMY AK RG NH   F        +    I++ L  A+ ++ L L Y P++     
Sbjct: 467 NADSAMYDAKQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRALASNALRLAYQPVVDARTG 526

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W  P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P 
Sbjct: 527 RTVGAEALLRWTSPELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPD 585

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++ +   D  L E +   +++T   P  ++L  +E V+M +      +L  L +
Sbjct: 586 LMLAVNLSPRQFHD-GLVESVSRCLAQTRLDPGALELEITEGVLMNDTATVLPMLEALTE 644

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           + + +++DDFGT  S L+YL   P   +K + S ++G       +AI ++++ MA ++  
Sbjct: 645 MNVRISVDDFGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDAVAITQAVVAMAHSLGM 704

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + A+ +  E     L ++GCD  Q    + PL      +
Sbjct: 705 KVTAEGVETEAQSWFLQQIGCDMQQGYLFSRPLDPVDYAR 744


>gi|284988703|ref|YP_003407257.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Geodermatophilus obscurus DSM
           43160]
 gi|284061948|gb|ADB72886.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Geodermatophilus obscurus DSM 43160]
          Length = 898

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 227/455 (49%), Gaps = 10/455 (2%)

Query: 508 DILRYIGI-ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +++  IG     + E++ +   +  +A  D LTG+PNR   LDRL   L   +       
Sbjct: 426 EVMGQIGTQLGRVVERELAQGRLTHHALHDPLTGLPNRVLLLDRLEVALAQRSRGG---V 482

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V  +D+D +K IND LG A GD V+ +   R+  +++  D +AR  G+ F ++  S  +
Sbjct: 483 AVAFVDLDHFKLINDSLGHAAGDTVITAAATRLRAVVRPGDTVARFGGDEFVVLAESVVD 542

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +   A  +  ++A P +L   E+ VTASIG A  + +   +  +L++A+ AMY AK 
Sbjct: 543 ERDVEGLAERLAGALAEPFDLAGDEVFVTASIGIAVSSGTGGDAHGLLRDADAAMYRAKE 602

Query: 687 RGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G    E F           ++   DL  A+E ++  L + P I L    ++G+EAL++W
Sbjct: 603 AGRARHEVFDSVMRAGAIRRLEIVNDLHRALERNQFVLHFQPQIDLRTNSLIGVEALLRW 662

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASK 803
            HP+ G I   EF+ +AEE  +I  +  ++L    +   +W D+     P+ + +N++ +
Sbjct: 663 VHPERGLIPPLEFIPVAEETGLINDLGRWVLRAACQQGRTWLDRFPDREPLVMSVNLSGR 722

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L    L E + A +  + +   ++ L  +ESV+M +   +   L  L+++G+ L +DDF
Sbjct: 723 QLHQPRLAEEVAAALEDSGFPADQLVLEITESVLMNDTAATIHTLEALKELGVRLAIDDF 782

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYG 920
           GT  S L+YL   P D +K + S + G         A+ R+I+ +AK +    +A+ +  
Sbjct: 783 GTGYSSLTYLQRFPIDILKIDKSFVDGLGSANIEESAVTRTIVALAKTLRLETVAEGVER 842

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              ++EL  + CD  Q    A PL   ++  L+ +
Sbjct: 843 SEHVRELQSLHCDIGQGYFFARPLDAGALTTLMAQ 877



 Score = 62.3 bits (150), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 72/244 (29%), Gaps = 26/244 (10%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +T    + +    +   +      +     Q V         +     +       +
Sbjct: 98  TATLTAVGHSSLTVDYVSSLVTHEDEPVAVFWFQDVAPRNQTESALHQLEMKYRAVTESA 157

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVG 473
            D +   D     V+       + G A+  + G     L  +     RD     +  F+ 
Sbjct: 158 SDAIVSADARGLIVSWNRGGEAMFGYAAEDVIGKP---LTILMPERYRDAHERGMGRFLL 214

Query: 474 YRRGRL----QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
               R+      E   + AD     + + +     + G+   + GI  DITE+K++   +
Sbjct: 215 TGEPRVIGSGAVEVHAQRADGTEFPVELSLS--HWAEGEGRFFTGILRDITERKRAEAAL 272

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                    TG      F+  L  +   S    + R  +        + I +  G  VG 
Sbjct: 273 ARE------TG------FIRLLQRVSVASNETSSGREALE----TGLRMIAEHTGWPVGH 316

Query: 590 DVLV 593
             LV
Sbjct: 317 IYLV 320


>gi|326315437|ref|YP_004233109.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372273|gb|ADX44542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 657

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/609 (22%), Positives = 263/609 (43%), Gaps = 19/609 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG----YFSQGIFSDGERQSL 409
           +  A        +++ AL    VL     G   ++   A G      ++G     ERQ L
Sbjct: 36  VAGAEALLPAGSVLRAALQAAFVLAPAGCGVWALRRWRARGREIAALARGALQADERQRL 95

Query: 410 A---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
           A   V  + + +   D     ++       ++G     + G   R +    H   R  + 
Sbjct: 96  AATVVDNAAEGMVVTDAESRILSVNAAFTRLMGYGEAELLGRTPRLFKSGRH--GRAFYE 153

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + +     R G  Q E   R  + +     + +  + N+ G++  Y+ +  DI+++ + 
Sbjct: 154 AMWEEL--GRTGHWQGEIWNRRKNGEVFPERMSLSSVRNARGEVTHYVCLFTDISQEHEQ 211

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+PNR  F  +L   +  +         V+++++D++K +ND  G 
Sbjct: 212 RRRLEVMAHTDPLTGLPNRTFFAQQLEEAMADARARGEP-LAVLLVNLDRFKDVNDSYGH 270

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD VL  +  R+ + L+  D+  RL+G+  G+I      +      A A+  ++A P 
Sbjct: 271 AVGDQVLRHIAARVQDALRPGDLAGRLAGDEIGVIARRVEGAPGAVAAARALLAALAEPW 330

Query: 646 -NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702
            +    E+  +AS+G   +     T+  +L+ A  A+Y A+  G      F  S      
Sbjct: 331 RSPDGFEVVASASVGICLFPDHGDTADALLQGAHAAVYGAREHGQGAWHFFDESLTQAAR 390

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ ++  L  A+    L L Y P + +    IVG EAL++W  P  G I+   F+ +AE
Sbjct: 391 ERLALEARLRSALAQGHLQLHYQPQVDIASGRIVGAEALVRWIDPVEGTIAPDRFIPVAE 450

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              MI  +  ++++   R    WR+    P + + +N++ +     +L       ++ + 
Sbjct: 451 RTGMIGPLGEWVMQEACRQAQGWREAGL-PGVTMAVNVSPRQFHLTDLAGCAALALADSG 509

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + ++L  +E  +   PE +R +L RLR +G+ L +DDFGT  S L++L   P D +K
Sbjct: 510 LPSTLLELELTEGALAERPEEARQVLLRLRGLGLRLAIDDFGTGYSSLAHLKRFPIDVLK 569

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     +   +AI  +II M  ++   ++A+ +     +  L   GCD  Q    
Sbjct: 570 IDKGFIRDLPQSADDMAICAAIIAMGHSLGLAVLAEGVETPEQLAFLRSRGCDRYQGYLC 629

Query: 941 ASPLGFNSI 949
             P+     
Sbjct: 630 RRPVPAAEF 638


>gi|326941229|gb|AEA17125.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 909

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 165/755 (21%), Positives = 307/755 (40%), Gaps = 20/755 (2%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I +       L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 162 ILFFSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LFIFILVLTGLAITD 217

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +L+ YL  +    +   +         +   ++   P  T+S     + +        +I
Sbjct: 218 YLYFYLQ-DDLSDRSVILLRCLYRVFLLFIAIAATIPKNTSSKRNYFIVNPTFGEKLLVI 276

Query: 328 --YHGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             Y  +       L         I    I     + +     +    L   L +    + 
Sbjct: 277 FPYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKDLTEALKVFNNQLE 336

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            TVIQ        S  +  + ER         D +   D     +      + +LG  S 
Sbjct: 337 RTVIQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSNGIVLNINQAGSMLLGKESA 396

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G            D+    + +          LQ   +     +   W  + I P+ 
Sbjct: 397 ALIGKEC--FSIFLDEDKSELESAIKKGKRCSSSSLQLRVKNNNEKDILFWY-VTIVPIM 453

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G       +  DIT  K+  + I   AF D +T I NR  F   L   +  +    +
Sbjct: 454 -IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRAQKTQD 512

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F II+ +
Sbjct: 513 -KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFAIIVHN 571

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +    ++ D    + +    P  + +    ++ SIG A +    I ++ +L++A++AMY 
Sbjct: 572 QT-EQQLLDLCKTLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYS 630

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I     +++G EAL
Sbjct: 631 AKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKAGKVIGAEAL 690

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + + IN++
Sbjct: 691 IRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWYSA-GYSNLKMGINLS 749

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +    +  + M + I +     + I L  +E + M + + +   L  L+  G+ L++D
Sbjct: 750 AIEFEQKDFVQTMISTIEEIGVPANSIDLELTERIAMVDEKETLSKLKVLKSYGVHLSID 809

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P DT+K     +           I+++II +A  +   +IA+ + 
Sbjct: 810 DFGTGYSSLAYLPLYPIDTLKIPKEFVNRIGTFTDGDEIIQTIISLAHTLNMKVIAEGVE 869

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 870 TKEQLTVLQRNACYLIQGYYYSKPVNEDEFIDFLS 904


>gi|91793928|ref|YP_563579.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715930|gb|ABE55856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella denitrificans OS217]
          Length = 1047

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 246/562 (43%), Gaps = 16/562 (2%)

Query: 400  IFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    E  S+A      S + +  +D     V T P  + I G  +  + G     L   
Sbjct: 474  LKRAEESLSIAASVYRNSSEAMCVFDYQGKIVNTNPAFSEITGFDADEVIGQHLAVLQK- 532

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++F   L+ ++  +R   Q E   +  + Q +   + I  +   +      + + 
Sbjct: 533  -EEQAEHFNLQLEQYLFEKR-YWQGELSFQRKNGQTYTAWVTINAIGELDTCDTLNVMLF 590

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             D++E+K++ E I   A  D LTG+PNR+  L+ +   +     D+     ++ +D+D +
Sbjct: 591  ADVSEKKQAEELIWLQANYDTLTGLPNRRMLLEYIKLQIANCTRDNQG-FALLFLDLDFF 649

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K++ND LG  +GD +LV  ++RI   ++  D++AR+ G+ F I+L        +      
Sbjct: 650  KEVNDSLGHDMGDSLLVEASQRIKACIRDADLVARIGGDEFTIVLTDFTGPKGVERVTNK 709

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            + K ++ P  L      ++ SIG   +    +T   +LKNA+ AMY AK  G N    F 
Sbjct: 710  ILKQLSEPFMLGSEMAYISGSIGITLYPDDALTIDGLLKNADQAMYSAKAHGRNKFNYFT 769

Query: 697  VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM---DEEIVGLEALIQWDHPKWGN 751
                 +      + +DL  A++  E  L Y PII       + I   EALI+W HPK G 
Sbjct: 770  PKMQETALRRMKLIQDLKTAIKMEEFELYYQPIIDFSANASDNITKAEALIRWHHPKLGF 829

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-EL 810
            IS  +F+ IAE+  MI  I  ++  +  R    W+       I I IN +     D    
Sbjct: 830  ISPVDFIPIAEDTGMIVEIGNWVFRQACRQAAQWKQTYG-LDIQISINKSPVQFRDERSS 888

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
                   +S+   SP+ I +  +E +++         L   R  G+ ++LDDFGT  S L
Sbjct: 889  VTSWTQYMSELNLSPASICVEITEGLLLETESGVGAKLAAFRDAGMQISLDDFGTGYSSL 948

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            SYL     D +K + S ++        +++  +II M+  +   +IA+ I  E+    L 
Sbjct: 949  SYLKKFDIDYLKIDKSFVSNLEDNTNDLSLCEAIIVMSHKLGIKVIAEGIETELQRAMLE 1008

Query: 929  RMGCDYIQDSHVASPLGFNSIL 950
              GCDY Q    + P+      
Sbjct: 1009 CAGCDYGQGYLFSKPVKAEDFE 1030



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 1/156 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             ++       +         + +  E+ +L +  S   +WDW I  + V +    A I+
Sbjct: 330 GSMLVIAGFLDITKLKQAEAALQNSKEQLALVLDSSDLGIWDWHINTNEVASNLRSAQII 389

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     ++     W   I   DR      L +    +    + E+R+R+ +    W++  
Sbjct: 390 GCELALLNQKPSLWFKAIIAEDRKRLIKSLLAIRKGQSIHHKIEYRIRSLNGDIRWILDT 449

Query: 499 IRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNA 533
            + +  ++ G  LR  G   DIT+ K++ E +   A
Sbjct: 450 GKVVEVADTGQPLRMCGTHTDITDLKRAEESLSIAA 485



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/344 (9%), Positives = 86/344 (25%), Gaps = 27/344 (7%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVL-------------GYISIDFGFLSKLVNLPSGELLIWR 254
             +       ++   A    ++               I +   F   L+        +  
Sbjct: 9   FLFFFLGQVAIVMMLAYFLCLIPRNDQQKHAPSYQIVIGVLAAFGVMLLIEHGIMYGLGL 68

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIA---ILFCMSFYYPMVTASIA 311
             +E         +         + A    I            +L       P V     
Sbjct: 69  PSNESVFQDLNQTYSSDSELTGLFFASSALIASLVGLYFGRYVLLVAALVLSPYVIYLTD 128

Query: 312 RITLASIVLYYTYFIIYHGMKGY--------ERAVLLIPAWILIFIWFIGLWMAITKRLD 363
              ++ I+      ++    + Y        + A L +   ++  ++     +       
Sbjct: 129 FPIISLILALGLSGVLGALFRRYTVEHLGTIKLAKLYLFGLVVQIVFLSTSMLTADNWRH 188

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +    +     +++L    ++   +      Q    +              +     
Sbjct: 189 VIHLNSLYLLVFFPLIMLAAANLMSKYIFFERNMQIRLQEDFLFKNQFDIGNIGIAITSK 248

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            +  +   P I  +L  +   +      W    H  D +   +  +  +       + + 
Sbjct: 249 AKYWLKVNPCICKMLKYSEKEL--TRMTWKELTHPEDLEKDLSYFNRMLKGEISEYEIDK 306

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           R  A D    +  + +      NG +L   G   DIT+ K++  
Sbjct: 307 RFIAKDGAIVYTHLTVACRFYDNGSMLVIAG-FLDITKLKQAEA 349


>gi|120609349|ref|YP_969027.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120587813|gb|ABM31253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 657

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 141/609 (23%), Positives = 265/609 (43%), Gaps = 19/609 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY----FSQGIFSDGERQSL 409
           +  A        +++ AL    VL     G   ++   A G      ++G     ERQ L
Sbjct: 36  VAGAEALLPAGSVLRGALQAAFVLAPAGCGVWALRRWRARGREIAVLARGALQADERQRL 95

Query: 410 A---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
           A   V  + + +   D     ++       ++G     + G   R +    H   R  + 
Sbjct: 96  AATVVDNAAEGMVVTDAESRILSVNAAFTRLMGYGEAELLGRTPRLFKSGRH--GRAFYE 153

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + +     R G  Q E   R  + +     + +  + N+ G++  Y+ +  DI+++ + 
Sbjct: 154 AMWEEL--GRTGHWQGEIWNRRKNGEVFPERMSLSSVRNARGEVTHYVCLFTDISQEHEQ 211

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+PNR  F  +L   +  +         V+++++D++K +ND  G 
Sbjct: 212 RRRLEVMAHTDPLTGLPNRTFFAQQLEEAMADARARGEP-LAVLLVNLDRFKDVNDSYGH 270

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD VL  +  R+ E L+  D+  RL+G+  G+I    + +      A A+  ++A P 
Sbjct: 271 AVGDQVLRHIAARVQEALRPGDLAGRLAGDEIGVIARRVDGAQGAVAAARALLGALAEPW 330

Query: 646 -NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702
            +    E+  +AS+G   +     T+  +L+ A  A+Y A+  G      F  S      
Sbjct: 331 RSPDGFEVVASASVGICLFPDHGDTADALLQGAHAAVYGAREHGQGAWHFFDESLTQAAR 390

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ ++  L  A+    L L Y P + +    IVG EAL++W  P  G+I+   F+ +AE
Sbjct: 391 ERLALEARLRSALAQGHLQLHYQPQVDIASGRIVGAEALVRWIDPVEGSIAPDRFIPVAE 450

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              MI  +  ++++   R    WR+    P + + +N++ +     +L       ++ + 
Sbjct: 451 RTGMIGPLGEWVMQEACRQAQGWREAGL-PEVTVAVNVSPRQFHLTDLAGCAALALADSG 509

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + ++L  +E  +   PE +R +L RLR +G+ L +DDFGT  S L++L   P D +K
Sbjct: 510 LPSTLLELELTEGALAERPEEARQVLLRLRGLGLRLAIDDFGTGYSSLAHLKRFPIDVLK 569

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     +   +AI  +II M  ++   ++A+ +     +  L   GCD  Q    
Sbjct: 570 IDKGFIRDLPQSADDMAICAAIIAMGHSLGLAVLAEGVETPEQLAFLRSRGCDRYQGYLC 629

Query: 941 ASPLGFNSI 949
             P+     
Sbjct: 630 RRPVPSAEF 638


>gi|170735854|ref|YP_001777114.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia cenocepacia MC0-3]
 gi|169818042|gb|ACA92624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia cenocepacia MC0-3]
          Length = 749

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/568 (22%), Positives = 249/568 (43%), Gaps = 11/568 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             ++ +    E   L V    + +         + + P    ++ +    +   +   + 
Sbjct: 181 RIARQLARSEEHHRLVVNSLSEGILVISREGIVIASNPSANRMMRVKGELVGRRLSTVIL 240

Query: 455 YIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDIL 510
                D    D         +      L Y      AD    W+     P+         
Sbjct: 241 RKLREDGTPIDPHDWPSRRALETATPMLDYTVGFGLADGDIIWVRGNAVPIVRPGETQAD 300

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVM 569
             +   NDI   +++ + +   A +D LTG+ NR+   DR+  +     A     R  ++
Sbjct: 301 SVLVSFNDIGPVREAQQQLRYMATRDALTGLYNRRWLGDRMRELFCVRDAAAGPARVAIL 360

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+  +KK+ND  G   GD +L S+  R+    +    L R+ G+ F I++   ++  +
Sbjct: 361 FIDLVGFKKVNDTAGHDAGDALLRSVAARLAACGEGRYALTRVGGDEFVILVDDCDDPDR 420

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           ++  A  + ++IA P  +   E  +  SIG +        ++ +++NA+ AMY AK RG 
Sbjct: 421 LSVLAREVIEAIAKPFAIANNEYWLGVSIGISVAPRDGDDAATLMRNADSAMYDAKQRGR 480

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           NH   F        +    I++ L  A+ +  L L Y P++       VG EAL++W  P
Sbjct: 481 NHFTFFTAQLNLRLQRRFAIEQSLRRALASDLLRLAYQPVVDARSGRTVGAEALLRWTSP 540

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +S +EF+ +AE+  +I AI  ++LE   R +  WR     P + + +N++ +    
Sbjct: 541 ELGPMSPAEFIPVAEDTGLIVAIGQWVLETACRQVAEWRR-TIAPDLMLAVNLSPRQF-H 598

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L E +   +++T   PS ++L  +E V+M + +    +L  L  + + +++DDFGT  
Sbjct: 599 EGLVESVGRCLAQTRLDPSALELEITEGVLMNDTDTVLPMLEALTDMNVRISVDDFGTGY 658

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  +    
Sbjct: 659 SSLAYLKRFPLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSW 718

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L ++GCD  Q    + PL  +   + L
Sbjct: 719 FLQQIGCDMQQGYLFSRPLDASDYARRL 746


>gi|94499806|ref|ZP_01306342.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanobacter sp. RED65]
 gi|94428007|gb|EAT12981.1| sensory box/GGDEF/GAF/EAL domain protein [Oceanobacter sp. RED65]
          Length = 1215

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 126/604 (20%), Positives = 257/604 (42%), Gaps = 16/604 (2%)

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              R+D                 +        +++         +   + +     + + +
Sbjct: 596  QGRIDGTFAIYHDHIKAPTDNDIAIIEKASKLVSITMEKHDADNRLMQAANVFEHASEGI 655

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRR 476
               DI  + +        I G +   + G     L          ++  + L++      
Sbjct: 656  LITDIDGEIIDVNKAFTQITGYSKEDVVGKNPRILSSGKYEQETYEDIFSTLENI----- 710

Query: 477  GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
            G+ + E   +        ++  I  + + +G    YI + NDIT  K   E +   A  D
Sbjct: 711  GQWKGEIWNKDKKGNLFAVLESISTVYDDSGKPRNYIALFNDITNIKSHQEQLENLANYD 770

Query: 537  NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +LT +PNR    DR+   + L+  + +L   V+ ID+D +K +ND  G  VGD +L++ +
Sbjct: 771  SLTQLPNRTLLTDRMQQAMALAKREGHL-LVVIFIDLDGFKPVNDRYGHDVGDRLLIAFS 829

Query: 597  RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            +R+  LL+  D L RL+G+ F  +L +             +  ++  P  + E ++ ++A
Sbjct: 830  KRVSLLLRSTDTLGRLAGDEFVTLLPNVQQFENCEPLLERILSAVEKPFIIDEHQLKISA 889

Query: 657  SIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCL 713
            S+G   +  ++   + ++L+ ++ AMY AK  G N    F  +  +  R   +    +  
Sbjct: 890  SMGVTVYPQAEDLDADQLLRQSDQAMYLAKQDGKNRYHLFDATQHQLMRDHHENLVRIQE 949

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            A++N E  L Y P + L   E++G+EALI+W H   G +    F+ + +    +     +
Sbjct: 950  AIKNKEFILHYQPKVNLRSGEVIGVEALIRWQHRDKGLLPPGSFLPLLDNHPAMIQFGKW 1009

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSF 832
            ++      I  W+ Q     + + INI    L   +    +++ +      +PS ++L  
Sbjct: 1010 VMHEALNQISVWQKQ--NLNLNVSINIDPMHLQSPDFISDLESALHNFPDVNPSFLELEI 1067

Query: 833  SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
             E+  + +       + R   +G+  +LDDFGT  S L+YL  +P   +K + S +    
Sbjct: 1068 VETAAIEDINVVSDTINRCHDLGVHFSLDDFGTGYSSLTYLKRLPIHVLKIDQSFVRDIL 1127

Query: 892  -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 +AI++ ++ +AK+   T IA+ +  +   + L ++GC+  Q   ++ P+   +I 
Sbjct: 1128 SDPDDLAIVQGVLGLAKSFNRTAIAEGVETQKHGELLLQLGCELAQGYGISRPIEAKAIP 1187

Query: 951  KLLK 954
              +K
Sbjct: 1188 DWIK 1191



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 58/188 (30%), Gaps = 5/188 (2%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
           +      +   KR+  +I     +  +    IL+   +    +   + +  +     R  
Sbjct: 297 LSISVGELPSRKRILFEISSEPFIAYVRAKSILMFAFLTILTVVAIFLTYYLTRPLRRIM 356

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTI 467
                + D V   D+  +       +  I G     M G      L     +        
Sbjct: 357 QVASEATDGVIITDVKGNIEWINRALTKITGYTLAEMKGLKPGKLLQG--PDTDPEVVQR 414

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +   +  ++   +            H++ I   P+ + NG++  ++ +  D+T Q +  E
Sbjct: 415 ISEGLRNKQ-HFKEVILNYTKSGDPHYVEIICNPLRSDNGNLSGFMALQRDVTHQIQL-E 472

Query: 528 GILCNAFQ 535
            +   +  
Sbjct: 473 KLEAFSSH 480


>gi|16124346|ref|NP_418910.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233028|ref|YP_002515464.1| MHYT/PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|48474944|sp|Q9ABX9|Y091_CAUCR RecName: Full=Uncharacterized signaling protein CC_0091
 gi|13421194|gb|AAK22078.1| sensory box/GGDEF family protein [Caulobacter crescentus CB15]
 gi|220962200|gb|ACL93556.1| MHYT/PAS-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 809

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/762 (19%), Positives = 303/762 (39%), Gaps = 43/762 (5%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
           R  +      +  +V G       F++ +   P  +       + ++L  + +     + 
Sbjct: 49  RGVVRAAWLLLTGLVAGSSVWATHFIAMVAFTPGLKTGYSPTGTLLSLMIAALFMASGFA 108

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSF------------YYPMVTASIARITLASIVLY 321
             +   +         +  + +                  +        A + +      
Sbjct: 109 VASAQRSTTNDFAGGVLIGLGVAAMHYMGMSAFVTQGQLVWEHATVGMSAVLGVGGATAA 168

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV--LIV 379
                    ++       ++   I++  +     + I       +    L GG++   + 
Sbjct: 169 LLLAGTARTIRRQAVGGGMLCLGIVMLHFTGMSAITIVPDASLTVPDQLLSGGMLTLAVG 228

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATIL 438
            +    ++  + A    SQ   S  ER       + + +    +   R+         ++
Sbjct: 229 SITSMIILGGLGAVAIESQTSRSALERIRRLANAAYEGLVV--VQSGRINDANAAFCDLV 286

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR-AADNQFHWMII 497
           G     + G    +   +            D      R  ++ E R+R     +   + +
Sbjct: 287 GAPLAELVGRPL-FGEIL----------TFDEA-DPSREDVRREGRLRPLVGGREIPVEV 334

Query: 498 RIRPMSNSNGDILR--YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             R M +          +    D+ E++ + E I   A  D LTG+ NR S   RL   +
Sbjct: 335 FSRLMDDGARVETSGLTVLAVRDLRERRAAEEKIRYLAEHDGLTGLLNRNSLQMRLAAAI 394

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           D           V+ ID+D +K+ ND  G   GD +LV   RR+   ++ P   ARL G+
Sbjct: 395 DRVEASGE-SLAVICIDLDHFKEANDQHGHLAGDALLVETARRLQSAVQAPSFAARLGGD 453

Query: 616 RFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            F ++ +   +     A+ A  + + +A P+    +E+ + +S+G + +     T+  ++
Sbjct: 454 EFIVVQIAGGDQPAVAAELAGRLIEMLAAPVPFDGQELAMGSSLGVSLYPDDGRTAEALM 513

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            NA++A+Y AK  G      F+        +R  +  DL   + ++EL + Y P+ R  D
Sbjct: 514 ANADMALYRAKESGRGVYRFFKREMDDTIRERRNLARDLRQGIADNELIVHYQPLARAAD 573

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            E+ G EAL++W HP  G I   +F+ +AEE  +I+A+  ++L R   D  +W       
Sbjct: 574 GEVCGFEALVRWKHPTRGMIPPLDFIPVAEENGLIEALGDWVLRRACADAAAWEK----- 628

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P+ I +N++   L +  L   +  ++  T  SPSR++L  +ES +  + +R+   L RL+
Sbjct: 629 PLRIAVNLSPIQLHNPALPTLVHEVLITTGLSPSRLELEITESALFKDYQRALDNLRRLK 688

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
            +G+ + +DDFGT  S LS L   PFD +K + S +          AI+R+++ + +++E
Sbjct: 689 ALGVRIAMDDFGTGFSSLSTLQSFPFDKIKIDKSFVENIHRHDRATAIVRAVLGLGRSLE 748

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             ++A+ +  E  I  L    C  +Q   +  P   +++   
Sbjct: 749 IPVVAEGVETEEQILFLRGEDCAELQGYAIGRPAPVDALTMW 790


>gi|330943152|gb|EGH45569.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 675

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 150/580 (25%), Positives = 265/580 (45%), Gaps = 31/580 (5%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 114 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 170

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 171 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 230

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 231 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 287

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F +++ +  +       A  
Sbjct: 288 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 346

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 347 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 406

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 407 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 466

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 467 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 525

Query: 815 QALISKTLYSPSRIKLSFSESVVMGN---------PERSRLLLGRLRKIGISLTLDDFGT 865
            A++ +    P         S++             E +R  L  L+K+G+SL +DDFGT
Sbjct: 526 AAILKEEELDP---------SLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGT 576

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S  SYL   P D +K + S +      E  + I  ++I MA N++  ++A+ I     
Sbjct: 577 GYSSFSYLKKFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQ 636

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +  L R  CD  Q      P+    ++K LK R+P   + 
Sbjct: 637 LAFLRRHRCDVGQGYLFDRPIPGEELIKKLK-RYPRRPSA 675


>gi|300864704|ref|ZP_07109560.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337310|emb|CBN54708.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 870

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 228/435 (52%), Gaps = 6/435 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q++    +   A  D LTG+ NR  F +RL+  L  +     +   V+ +D+D +K IND
Sbjct: 425 QRRVEGMVRHQASHDQLTGLANRLLFNERLSLALANANQRGEM-LAVVFLDLDGFKHIND 483

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG AVGD +L  +  R+   L+  DI+AR  G+ F  +     ++         +  S+
Sbjct: 484 TLGHAVGDQLLQCVAHRLITSLRTGDIIARWGGDEFTFLFSHIKSAEDTTKICQLILHSL 543

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
             P  L +RE+ + AS+G A        +  +LKNA+ AMY AK +G N+ + +  +   
Sbjct: 544 NTPFQLEDRELYIKASLGIALAPYDGEDADTLLKNADAAMYRAKQQGRNNYQLYSPAIGS 603

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R++++ +L  A+E+ E  L Y P I L    ++G+EAL++W HP+ G I  +EF+ 
Sbjct: 604 KAFERLILENNLYRALEHKEFLLYYQPQIDLNTGMMMGVEALLRWHHPERGLIPPNEFIP 663

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  I  +++        +W+  A +PPI + +N++++      L + +  ++ 
Sbjct: 664 LAEETGLICPIGEWVMRTACAQNKAWQ-LAGLPPIRMAVNLSARQFQQTSLVKTIPQILE 722

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P  +++  +ES+ + + + +  +L +LR++GI +++DDFGT  S LS L ++P D
Sbjct: 723 ESGLKPEYLEIEITESIAVRDVQFTIAILCQLRQMGIHISMDDFGTGYSSLSSLKHLPLD 782

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +          AI++ ++ +   ++  +IA+ +     ++ L  + CD  Q 
Sbjct: 783 NLKIDQSFIKELMSDRNDAAIIKVVLALGHGLKLRVIAEGVETWDQLQFLRGIKCDGAQG 842

Query: 938 SHVASPLGFNSILKL 952
              + PL   ++ ++
Sbjct: 843 YFFSRPLPAKALTQM 857


>gi|251789553|ref|YP_003004274.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Dickeya zeae Ech1591]
 gi|247538174|gb|ACT06795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya zeae Ech1591]
          Length = 722

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/585 (23%), Positives = 248/585 (42%), Gaps = 22/585 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   L          +   R       S D +   +              +L  +  
Sbjct: 152 AALVMDKLEMRRLDLARRASQARFESIAESSPDAILCVNDKGTITFWNESAEKMLEYSRD 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500
            + G     +  I  +    F   L      +         E   RA         + + 
Sbjct: 212 QIIGEH---ISSIVPD---MFVVQLHHLATDKTAIFKGSSIELETRALPGTMIPTELTVS 265

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                + +  RY  I  D TE+++  E +   A +D LTG+ NR      L  +L     
Sbjct: 266 --MWHDHNQTRYGIILRDTTERQRYEERLFLQAHRDPLTGLANRTLLTSTLDQVLK---- 319

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     +M+ID+D +K IND LG A GD++L S++RR+ + ++  D++AR+ G+ F I+
Sbjct: 320 -NGEPAAIMIIDLDGFKDINDSLGHASGDEILSSVSRRLQDNVQSGDLVARMGGDEFAIL 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L  +N+  ++A  A  +   I+  + +  ++I  +ASIG   + +   T  ++L +A+LA
Sbjct: 379 LPKQNDKERVAKLAEKIIHDISQAVLVDNKQINTSASIGLVMYPTHGTTVQDLLTSADLA 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N    F        +      L    A E  E  + Y P + L++ +IVG 
Sbjct: 439 LYQAKADGRNCYRFFTRELREVFQARHAFQLEFIRAYEQEEFEVFYQPQVSLVNSKIVGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G +  + FM   E     + I  ++++   +    W          I I
Sbjct: 499 EALLRWRHPYKGLLGPAAFMSALERGPWAERIGDWVVQSACQQASEWCRAGAR-NFRISI 557

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+ +       L + ++ ++ +T   P  ++L  +E++++ + E     L  LR  GIS+
Sbjct: 558 NLFAAQFRSGRLAQKIKDVLMQTGLKPGALELEITENIILRHDESMMKPLNELRSSGISI 617

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             DD+GT  + LS L + P   +K + + +    E     AI+R+I+ + K+    +IA+
Sbjct: 618 AFDDYGTGYASLSMLKHYPVTRLKIDQTFVRAMCESAPDAAIVRAILYLGKSFGLDVIAE 677

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK-ERFPLV 960
            +  +   + L   GC+  Q      P+      KLL+ E  PL 
Sbjct: 678 GVETQEQCERLLNKGCEQAQGYLFGRPMPAAEFEKLLELENAPLA 722


>gi|326316390|ref|YP_004234062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373226|gb|ADX45495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 689

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 122/585 (20%), Positives = 239/585 (40%), Gaps = 16/585 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             + +    +            +          +  + D +   D+          +A +
Sbjct: 105 EGMPLLVLGMLDRSEQASIQGELERLLSELRATLDSAADGMLVCDMGGRVRAFNQRMAWL 164

Query: 438 LGLASGSMHGPIRNWLPYIHIN---DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +    +       +     +   D D +R  L     +          +R        
Sbjct: 165 WNMPEDLLVQRDDAAVEAHMADQVIDADAYRARLLGIAQFPEEETLDILHLRT--GTV-- 220

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  R  P   S G  +  +    D+T Q  + + I   A+ D LTG+PNR      + + 
Sbjct: 221 IERRSVPQM-SQGRPMGRVYSFRDLTLQHAAQKRIEQLAYSDVLTGLPNRLLLSRCVASA 279

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L+ +         ++ ID+D++K IND LG   GD VL  + +R+   L+  D+L RL G
Sbjct: 280 LETARAQGGG-FAILFIDLDRFKIINDSLGHLFGDRVLQLVAQRLQGCLRQSDMLCRLGG 338

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F + L    +       A  + + +  P  L     ++  SIG A       T  +++
Sbjct: 339 DEFVLHL-DAGDESMAESVAHRILEDMRQPFMLDGMGFSIQCSIGIALHPRDGETLDDLI 397

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K A+ AMY  K RG      ++         R+ ++  +  A++  +  + Y P + +  
Sbjct: 398 KQADTAMYRVKERGRGSYGFYQPQMNADMLSRMQLEHAMRQALDRGDFAVHYQPQVAMAS 457

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +VG EAL++W+ P  G +S   F+ +AEE   I  +  ++LE+  R+   W       
Sbjct: 458 GRVVGAEALLRWNDPGLGAVSPGVFIPLAEESGYIVTLGAWVLEQAIREAARWMQAG--T 515

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P+ + +N+++ +   +   E + +L+       S ++L  +E++++ + +     L  L 
Sbjct: 516 PLVVAVNVSALEFRQSGFVERLVSLLRSHGLPASLLELELTETILLQDAQEMAQRLAALA 575

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G+ L++DDFGT  S L+YL  +    +K + S + G    E   AI+ +I+ + + + 
Sbjct: 576 ELGVGLSIDDFGTGYSSLAYLKKLHIHKLKIDQSFVRGLPDDESDRAIIEAIVHIGRALR 635

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++A+ +      + L  M C Y Q   VA  L       L+  
Sbjct: 636 IQVVAEGVETPQQREALQAMQCHYFQGFLVAPGLPAEDFRALVAR 680


>gi|299134901|ref|ZP_07028093.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Afipia sp.
           1NLS2]
 gi|298590711|gb|EFI50914.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Afipia sp.
           1NLS2]
          Length = 806

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 148/755 (19%), Positives = 292/755 (38%), Gaps = 47/755 (6%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFMYLHWNRWH 279
           T  +      + +   G L+    +      +    S       +++ F+        W 
Sbjct: 53  TAGLVGGCGVWATHFIGMLAYTPGVSISFDFLMTVASLGVAIVMMVVGFITATYGDRTWA 112

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIA--RITLASIVLYYTYFIIYHGMKGYERA 337
             +G         +     ++              + ++         +    ++  E  
Sbjct: 113 PLIGGGILGAAISLMHYLGIASLRMPADIVWMPDLLAVSIACGVGFGALSLSVVRRGETV 172

Query: 338 VLLIPAWILIFIWFIG---LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
                   L+ +  +    + M+    + +D+   +   GL  I + +G   +       
Sbjct: 173 WFGAIGAGLLMVAILTDHFIAMSAMGLI-SDVTATSENVGLSPIALSVGVASVMAAFVVA 231

Query: 395 YFSQGIFSDGERQSL---------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                I     R+ +         A+      +  +               +  +A   +
Sbjct: 232 CLISAISDRRSRRDINERNIQLNAAIDNMRQGLCMFGPDNCLQLWNEKYVGMYKIAPEDI 291

Query: 446 HG--PIRNWLPYIHIN-----DRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
                + +             D D++ + L + V  R   R   E      D +   +  
Sbjct: 292 RVGMTVDDMFAARKKAGTIVKDLDSYSSHLWNSVENREFTRWILEL----VDGRTISVSY 347

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           +       NG    ++G   DITEQ+KS   I   A  D+LTG+ NR +F + +  + + 
Sbjct: 348 QSM----ENG---GWVGTHEDITEQRKSEAQIQYLAQHDSLTGLFNRAAFNEHVHKVWEE 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  +     T++ +DID++ +IND  G + GD  L    RR+         +ARL G+ F
Sbjct: 401 AMREQR-SFTILSLDIDRFSEINDTYGHSAGDTFLDEAARRLQAA-CGSAFIARLGGDEF 458

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+        +  D    +  +  M  ++    I    ++G + +         ++ NA
Sbjct: 459 MIVSSEGEQPARAGDICTRVLTAFEMTFHIEGHPIHSGCTVGVSIFPQDGADVETLITNA 518

Query: 678 ELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++A+Y AK   RG        +     ++  +  DL +A+ N +L L Y P     D   
Sbjct: 519 DVALYRAKKEERGSVRFFEPAMDKQLREKRALLHDLGVAIGNGQLELHYQPQG-GPDGNP 577

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G E L++W HP  G I+   F+ +AEE   I AI+ ++L    R+  SW +     P+ 
Sbjct: 578 FGFETLVRWRHPAKGLIAPGAFIPLAEETGSIVAIDAWILREACREAASWPN-----PLQ 632

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN++      N+L   + +++ +T  +P R+++  +E V+M +  R+  +L R++ +G
Sbjct: 633 IAINVSPMSFQQNDLPGLIHSILLETGLNPKRLEIEITEGVLMQDFSRACSILRRIKNLG 692

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + + +DDFGT  S LSYL   PFD +K + + +    +     AI+R+II + + +   +
Sbjct: 693 VRIAMDDFGTGYSSLSYLQSFPFDKIKIDQTFVAQIHKNVQSSAIIRAIISLGEALNLGV 752

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           IA+ +  E     L   GC  +Q   +  P   ++
Sbjct: 753 IAEGVETEAQRDFLADAGCTEMQGYLLGRPQPISA 787


>gi|307720930|ref|YP_003892070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979023|gb|ADN09058.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 592

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/580 (23%), Positives = 259/580 (44%), Gaps = 34/580 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIAT--ILGLASGSMHGPIRNWLPYI----HIN- 459
            +L      D++W  D+    +     I    ++   +    G    +        H   
Sbjct: 16  LNLLTQHLPDMLWVKDLEGKYIYANKAICNDLLMAKDTQEPIGKGDIFFALREREAHKEI 75

Query: 460 -DRDNFRTIL----DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            D   F  +        +   +     E+       +  ++ +   P  + +G+I+  +G
Sbjct: 76  ADWHTFGELCFNSDQLVIDSNKAMKFEEYGNVK--GKLMYLEVYKAPFYDKDGNIIGTVG 133

Query: 515 IANDITEQKKSL--------------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              DIT+ KK                + +   A  D LTG+PNR  F+DRLT  + L+  
Sbjct: 134 AGRDITQLKKIQFDLENSLEELDTKRDQLEFQANHDALTGLPNRVLFMDRLTQAIKLAKR 193

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     V+ +DID +KKIND LG  VGD++L+ +T+R+   ++  D LARL G+ F II
Sbjct: 194 -EKQHVAVLFLDIDDFKKINDSLGHHVGDEILIEVTQRMLLKMRKSDTLARLGGDEFCII 252

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + +  +   ++       +    P    E  + ++ S+G + + +    +  +LKN++ A
Sbjct: 253 INNIKDIDDVSKIIENGMEVFRDPFITQEHTLYISISVGVSLYPNDGKDAIALLKNSDAA 312

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK    +    +     +       ++ ++  A E  E  + + P +    + + G+
Sbjct: 313 MYKAKQNTRDRYSFYDEEMTKKAYERIFLETEMRKAFEKDEFVVYFQPQVHAKTKILTGM 372

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G I    F+ +AE   MI  ++  ++++       W+     P   + I
Sbjct: 373 EALVRWQHPDMGFIYPDRFIPLAESTGMIIKLDRIVMKKAISQFSRWKKSGLEPK-KVSI 431

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+    L + +  + ++ L+     S S ++   +E  +MGNP+ S   L +L ++GIS+
Sbjct: 432 NLTMTQLAEGDFYKFIKELLEYENVSASEVEFEITEREIMGNPDASIKALEKLNELGISV 491

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S L+YL  +P + +K + S +    +     AI+++II + +N+E  +IA+
Sbjct: 492 AIDDFGTGYSSLTYLKRLPINKLKIDKSFIDNIPKDLSDSAIVKTIINLCENLELQVIAE 551

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  E     L    C+ IQ    + P+    + + +K+ 
Sbjct: 552 GVEEENQNDFLFENNCEDIQGFLFSHPINVKDMEEFIKKH 591


>gi|116748462|ref|YP_845149.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697526|gb|ABK16714.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 702

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 229/477 (48%), Gaps = 21/477 (4%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           R + N+ G+      +  D+TE++K  + +L  A+ D LTG+ N+ S  +R+   L+L  
Sbjct: 231 RILPNAEGEPT---VVMRDVTERRKMEKELLQLAYHDPLTGLLNQHSMRERIARALELPG 287

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI----------- 608
               +   ++ +DID  K++N   G  +GD +L  +  R+    +  D            
Sbjct: 288 QHGRMT-AILWVDIDHLKRVNATFGHELGDVLLQRVADRMLGCARRTDRKARLGSDQSIK 346

Query: 609 -LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +AR+ G+ F ++L   ++    A+ A  +   ++ P  L   E+ VTASIG A      
Sbjct: 347 AVARMGGDDFVVLLTEISHVKGAANLAKRLLDDLSQPFVLDRHEVYVTASIGIAVHPHDG 406

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYH 725
             +  +LKNA+ AM+HAK  G N+ + +  S  +     + ++ DL +A+   EL++ Y 
Sbjct: 407 AEAGTLLKNADSAMHHAKAEGRNNFQFYTSSGKTAALRSLTLEGDLRMALARRELFVEYQ 466

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P I L   E VGLE L++WDHP  G I   +F+ +AEE  +I  I  ++L         W
Sbjct: 467 PEIDLKTGETVGLETLVRWDHPTLGLIPPLDFIPLAEETGLILPIGEWILSIACMQNAIW 526

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                  PI + +N++        L + +   ++ +   P  ++L  +ES +M N   + 
Sbjct: 527 HKSGL-EPIRVAVNLSGHQFRQRNLIKTIAKTLTNSRLDPQHLELEITESTLMENAASTI 585

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903
             +  L+ +G+ L +DDFGT  S LSYL   P D +K + S +          AI R+II
Sbjct: 586 HTVKELKSMGVRLAVDDFGTGYSSLSYLRRFPLDVLKIDRSFIRDVTINADDAAITRAII 645

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            MA N+   +IA+ +  E  ++ L    CD  Q  +   PL    + K L+++   +
Sbjct: 646 AMAHNLNLEVIAEGVENEQQLQFLQENNCDMAQGYYYCRPLTPAKLTKHLEKQSSGL 702


>gi|256158917|ref|ZP_05456764.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           M490/95/1]
 gi|256254288|ref|ZP_05459824.1| diguanylate cyclase GGDEF domain-containing protein [Brucella ceti
           B1/94]
          Length = 703

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEY- 524

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 525 ----IKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|254515058|ref|ZP_05127119.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
 gi|219677301|gb|EED33666.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium NOR5-3]
          Length = 815

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 159/829 (19%), Positives = 312/829 (37%), Gaps = 32/829 (3%)

Query: 132 PSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQ-IYLWEPNFYKDTVNSFTL 190
              G    R     S  F +       V  ++ +++ ++   +  W     +      T 
Sbjct: 7   GGTGSRHFRE-QHGSASFGLLFA----VALLLTVASFSIFTRLMDWSWVAIEFHSALET- 60

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250
                +G    L        +  ++        +   + G      G  S          
Sbjct: 61  -----VGAVIALIPVTVALAINTQTPREALGIPVICGMAG-----MGVFSLAHAAVPPGN 110

Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY--PMVTA 308
                 S          F        R+            A +  L  +      P +  
Sbjct: 111 AFVWLHSLAIFFGGTCFFSNFIATTARFSGVQTLYLVITAASLISLSAIVQPDAVPQMII 170

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD--NDI 366
           S      A ++      +    +  + RA         +    +   + ++  L   + I
Sbjct: 171 SGQFSNFAVLLNLLGGALFLLSIPSFYRAYRSSHGEQHLLFASVAFCLGLSGVLFPFSQI 230

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
                     +  + +       +L       G  +D    +     +   ++  D + +
Sbjct: 231 WSDVWWYWHFVFFLGLLLMAGLFLLLLRRGFTGSQADAAMLAAITENANAAIYAKDPLGN 290

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                     I GL+  ++ G           +          + +  RRG +++E  + 
Sbjct: 291 YRFVNKYWEQIFGLSIAAVVGRRDE--DLFPPSMARALSQRESNVMDQRRG-VEFEDSLS 347

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
           + + +  ++  +  P+  S+  ++   GI  DI+++K   E +   A  D+LTG+PNR  
Sbjct: 348 SPNGRRAFISAKF-PLLASDSTLMGLAGIYTDISDRKALEEQLEQLAHFDSLTGLPNRAL 406

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             DRL   +  S    + R  V+ +DID +K IND LG   GD++L++++ R+  +L+  
Sbjct: 407 ARDRLAQGIAQSKRQGS-RLAVLFLDIDNFKVINDSLGHHAGDELLLAMSGRLRNILRGG 465

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D L+RL G+ F  +L+   +       A  +  +       L   +  + SIG A +   
Sbjct: 466 DTLSRLGGDEFLAVLLDVKSREDAVFAANKLLATTKERFEALGNSVHSSLSIGLALYPED 525

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVY 724
            ++  E++++A+ AMY AK  G   V +++       +  + +  +L  A+E+ +  L +
Sbjct: 526 GLSIDELIQHADTAMYQAKSAGRGRVATYQRQQTSDVTTELHLLSELRDAIEHEQFELHW 585

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P + L D  + G EAL++W  P  G +    F+  AE   +I  +  ++L    + I  
Sbjct: 586 QPQVNLRDGSLCGAEALLRWKRPGAGCVLPQFFIPFAESHGLIAELGDWVLAAALKQIGI 645

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W  Q +       IN+A  DL D+     +     +   +PSR+    +E  V+ + E  
Sbjct: 646 WAKQNSDATF--SINLAPADLADDGFMPKVLGYCEEHKVTPSRVVFEITEQDVLSSLELG 703

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSI 902
           R  + +LR+ G +L++DDFGT  S L  L   PF  +K + S + G  E     AI+++ 
Sbjct: 704 RENIMQLRQQGFTLSIDDFGTGNSSLLRLKKFPFHELKIDQSFVQGIPEDAESLAIVQAT 763

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + MAK ++  ++ + +  E     L  +GC   Q  +   P+      K
Sbjct: 764 LSMAKALDMQVMTEGVETEQQAGFLLGIGCIKAQGFYFGRPVSAAEFEK 812


>gi|261221443|ref|ZP_05935724.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|265997405|ref|ZP_06109962.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
 gi|260920027|gb|EEX86680.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|262551873|gb|EEZ07863.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
          Length = 709

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEY- 530

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 531 ----IKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|291570749|dbj|BAI93021.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1208

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 154/583 (26%), Positives = 288/583 (49%), Gaps = 16/583 (2%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            +V L+    +Q       F +      E+       + + ++  D+    ++  P +A I
Sbjct: 622  LVKLVSSVAMQL---GSVFQRK--QAEEKYRDIFENALEGIFQIDLQGKYISANPALAKI 676

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             G  S          +  ++  D + +   ++  +  +     +E +V   D Q  W+  
Sbjct: 677  FGYESQQQLLVRGKQIKSVY-ADPETYNRFIN-LLQTKGSVSNFEAQVYRRDGQSIWIWQ 734

Query: 498  RIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              R +  + +  +L Y G   +IT  K++   +  +A  D+LT + NR  FLD+L   L 
Sbjct: 735  NARALYSDRHDRVLYYEGSIMEITHLKETEAKLRHSASHDSLTDLWNRAFFLDKLNDSLR 794

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
               T DN +  ++ +D+D ++ IND LG A+GD +L+ +++R+ + +    ILARL G+ 
Sbjct: 795  KCKTLDNYQFAILFLDLDGFQFINDSLGHAIGDQLLIEISKRLTDCVDSH-ILARLGGDE 853

Query: 617  FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLK 675
            F I+L +  +  +  D A  +++++ +PI L + +I   ASIG     + +  +S E+L+
Sbjct: 854  FTILLENITDIQEAIDVAERIQEALKLPIFLGDNQIFTGASIGIVEGNNSNYESSPEVLR 913

Query: 676  NAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE 733
            +A+ AMY AK +G      F  +   +    +  +  L LA++  +  L Y PII L   
Sbjct: 914  DADTAMYRAKRQGKGCYVVFDSTMRTNALRRLYLQTQLRLALQEQQFELNYQPIIELSTG 973

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MP 792
             I G EAL++WDHP+ G IS +EF+ IAEE  +I  I  ++L +    +  W+D+     
Sbjct: 974  TIAGFEALLRWDHPQEGLISPAEFIPIAEEAGLIVDIGEWVLRQACFQLSEWKDKFAVYS 1033

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + +N++S+   + +L   +  ++ +T  + S +KL  +E+ +M +PE +   L +L+
Sbjct: 1034 NLMMSVNLSSQQFTN-DLGRRISNILVETGVAGSELKLEITETAIMNDPELAIATLQQLK 1092

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            +  I + +DDFGT    L YL   P D +K + S ++     E +  I+R I+ +A++++
Sbjct: 1093 QQQIKICIDDFGTGYCSLGYLHKFPVDILKIDRSFVSQIPEGEDKREIVRVIVALAESLK 1152

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               IA+ I     +  L +  C Y Q      PL   ++  LL
Sbjct: 1153 MDAIAEGIETAEQLHHLQKFNCKYGQGYFFFRPLNRQAVEALL 1195



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/199 (12%), Positives = 64/199 (32%), Gaps = 14/199 (7%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
           +R +       ++ +    +   +                LVL +  +   + Q +L   
Sbjct: 294 KRNLYSPVYRQILLLSGTMMLFIMVG-----------TTCLVLTIRPLTNQISQEILERH 342

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +  +       +  +       D+        P +   LG     + G   +   
Sbjct: 343 KAEAELIKEKNFTQTLLEANPAFFIVLDVEGKVKFMNPSMLHTLGYKQEEVEGMNYS-AT 401

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYI 513
           ++   +  +   + +  +  RR  ++ E  +   D++   +    R + N    +   ++
Sbjct: 402 FVPKEEGKSAPWVFELMI-NRRLPIRTEETMITKDDREIIVEWYGRAVFNKETDEYEYFV 460

Query: 514 GIANDITEQKKSLEGILCN 532
           G   DIT++K++ E I   
Sbjct: 461 GAGLDITDRKRADEEIQLL 479


>gi|160896183|ref|YP_001561765.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160361767|gb|ABX33380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 881

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/561 (24%), Positives = 246/561 (43%), Gaps = 15/561 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH-IN 459
            +  + ++    S   +   D  R      P    I G AS  + G   R     +H   
Sbjct: 311 RELAQAAVVFDSSHQGIMVVDPGRRITRVNPAFTRITGYASEDVIGKTPRVLSSGLHGPE 370

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               F   + + +  R G    E   R    +    ++ I     + G+I  YIG+  DI
Sbjct: 371 ----FYRQIWACIE-RDGFWHGEIWNRRKTGEIFAEMLSISAAQGAGGEIEHYIGVFTDI 425

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K     +      D LTG+PNR+  +DRL   +  +A +      V  +D+D +K+I
Sbjct: 426 SHIKAHEAELERVTHYDLLTGLPNRRLLIDRLNQAMLRTAREGR-SLAVCFLDLDGFKEI 484

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND+ G A GD +LV +   +  +L+  D LARL G+ F ++L    ++   A     + +
Sbjct: 485 NDLHGAAAGDALLVGVAAHLKSVLRSEDTLARLGGDEFVLLLSHIGSAEHCATILDRVLE 544

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           + + P+ + +R ++VTAS+G + +   +     +L++A+ AM  AK  G N  + F   +
Sbjct: 545 AASRPVPVQDRVLSVTASLGVSLYPDDQADPDLLLRHADQAMCVAKQAGRNRYQLFDPEN 604

Query: 700 FRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            R       +   L  A+E  E  L Y P + L    +VG EAL++W  P+ G  +  EF
Sbjct: 605 DRKAHARRLQLGWLRQALEKGEFLLHYQPKVELGGGRLVGAEALLRWHDPRQGLRAPGEF 664

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +       + + +  +++         W        + + IN+++  LLD      M  +
Sbjct: 665 LPFVAGSDLERPLGDWVIGEAVAQAARW--FGQGLDLCVSINVSANQLLDGGFHAKMAQV 722

Query: 818 ISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +++     P  I+L   ES  + + E++  ++G+ R++GI   LDDFGT  S L+YL  +
Sbjct: 723 LARHPDLPPHLIELEILESAAIADMEQAIQVMGQCRQLGIRFALDDFGTGYSSLTYLRKL 782

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P  ++K + S +         + I+  +I +A   +   +A+ +      + L  MGC  
Sbjct: 783 PVQSLKIDQSFVRDMLADPDDLGIVEGVIQLASTFQLESVAEGVETPKHARRLRDMGCHV 842

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q   +A P+  + +      
Sbjct: 843 AQGYGIARPMPADQLPAWAAR 863



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 98/329 (29%), Gaps = 24/329 (7%)

Query: 212 VNRSSMLIPTFAM-AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
             R  + + T +         I  D    +   +   G L + +    +  +  L+ F  
Sbjct: 5   ARRRFIGLITVSYGLLAFAWIILSDKLLFALAGSADIGWLSVGKGLFFVLATDFLLFFAL 64

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
             +   +           G     +     F   M  A +A  +  +        ++   
Sbjct: 65  CSVPAAQDSGASAIAQEMGPRRFPVWASYLFSLAMSLAVLAASSTLASHFGERSLLLLFM 124

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
           +     A++      L+   F    +  T  +D        V  +  + + +    +Q  
Sbjct: 125 LPVLVSALIGGLGPGLLATAFAAYSLDQTDGVDVRDWAQWGVVAVNGLAVSVLAETLQRS 184

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-- 448
           L      + +          + G+ D V+  D+    +      A+++G  +  + G   
Sbjct: 185 LRKANMQRQLLDS------VISGTSDAVFVKDLRGRYLLVNRAAASLVGRQAEDIVGKDD 238

Query: 449 ----IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                      I   D+   R  + +                    +   +++   P+ N
Sbjct: 239 FALFPFGIASAIRRKDQAVLRQEVATHEEQLTVEP----------GRTLDLLVTKGPVRN 288

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA 533
           + G I    GI+ DITE+K+  E  L  A
Sbjct: 289 TAGHIAGLFGISRDITERKR-FERELAQA 316


>gi|163842484|ref|YP_001626888.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163673207|gb|ABY37318.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 703

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|326537956|gb|ADZ86171.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis M5-90]
          Length = 691

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 100 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 159

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 160 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 216

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 217 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 276

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 277 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 334

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 335 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 393

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 394 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 453

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 454 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 511

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 512 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 568

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 569 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 628

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 629 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 676


>gi|163781840|ref|ZP_02176840.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883060|gb|EDP76564.1| sensory box/GGDEF family protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 959

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 220/434 (50%), Gaps = 8/434 (1%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A+ D LTG+PNR    DR+ + +  +  + + +  ++ ID+D +K +ND LG  
Sbjct: 527 EELKKMAYFDPLTGLPNRTLLRDRIESAIHFANRNGS-KVAILFIDLDYFKTVNDTLGHD 585

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +LV + +R+  + +  D +AR  G+ F  ++    +   +   A  +    + P  
Sbjct: 586 VGDRILVQVAKRLSSVFRETDTVARFGGDEFVAVIPDVRDLKDVVQVAERILSLFSTPFE 645

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDR 704
               +I ++AS+G A +  +    +E++KNA++AMY AK  G ++   F         + 
Sbjct: 646 ANGEDIYLSASVGIAVYPDNGENPTELIKNADMAMYRAKEEGKSNFSFFTEEMNSKAVEI 705

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +K  L  A+E  E  L Y PI  L D  IVGLEAL++W  P  G +S ++FM I EEL
Sbjct: 706 LSVKNKLHKALERGEFLLYYQPIYSLGDNSIVGLEALLRWRDPDRGLVSPAKFMPILEEL 765

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++K +  +++    +    W D+     I++ +NI+ +  +D    + +  + S T  +
Sbjct: 766 GLVKEVGRWVMGEAFKKSREWGDRYG---IYVSVNISPRQFMDRNFVKRVLQIASDTNAN 822

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + L  +E+ +M NPE S  +L RLR  G  + +DDFGT  S L+YL  +P D +K +
Sbjct: 823 NEHVVLEITETSLMRNPEESVSILKRLRAKGFKVAVDDFGTGYSSLAYLKRLPIDIIKVD 882

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            +   G   +    +I+ ++I ++K++    +A+ +     +  L  +GCD  Q      
Sbjct: 883 MTFTQGMVKSNVDRSIVMAVIGLSKSLGLKSLAEGVETREQVNILRELGCDLAQGYLFGK 942

Query: 943 PLGFNSILKLLKER 956
           P+       L+++ 
Sbjct: 943 PMKEEEAEALIRKE 956


>gi|307610217|emb|CBW99775.1| hypothetical protein LPW_15411 [Legionella pneumophila 130b]
          Length = 840

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/806 (18%), Positives = 325/806 (40%), Gaps = 63/806 (7%)

Query: 193 GIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGY----ISIDFGFLSKLVN 244
            I+   A    +             +SS+++      +  LG+    + ++ G      +
Sbjct: 54  AIVYNTALCFIVLSLAILFSLNCYYKSSLILSIIVFVFSGLGFSQHILGVNLGVDEIFFH 113

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK-----VGYITFSGIACIAILFCM 299
                   +        +   ++     +  N    +     +       + C+AILF  
Sbjct: 114 HYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAILFIS 173

Query: 300 SFY------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPAWIL 346
            ++             PM   +     + S      Y+      +     A+  + ++ +
Sbjct: 174 GYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCI 233

Query: 347 IFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           I  + +     +    RL+        V G + +  L G  +    LA        ++  
Sbjct: 234 ILTFTLLSFEILEKENRLNLSFSVATFVIG-IFLSFLFGLVIRLWQLAKLSAIAAKYAFL 292

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLAS----------GSMHGPIRNW 452
           E     +  + D +   D     +        +   G+              ++  + N 
Sbjct: 293 E-VEATLESTADGILVVDKESKVINYNQRFLDMWRQGINPPRIINYLDIKEEINKQLVNK 351

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              IH          ++  + +   +  +E +++      ++         + +  I+  
Sbjct: 352 REVIH---------RINQTIKHPDHKNSFELKLK---GNLYYDCYTQPLKLDED--IIGR 397

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DIT  K+    +   +  D LT +PN+   +D L   +  + +D  +   V ++D
Sbjct: 398 VWSFRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKI-VGVYLLD 456

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++ +INDV G + GD+++  + +R+ + +    IL R+SG++F I++ S +   +   
Sbjct: 457 LDRFTQINDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIREAVL 515

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +  +   P+ +    I ++ SIG + +     T   +L  A++A+   K  G N+ 
Sbjct: 516 GVTRLLAAFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNF 575

Query: 693 ESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +           ++++ +L  A++  E  L Y PI+ L    + G EALI+W+HP+ G
Sbjct: 576 QFYTRDMNTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNVNGFEALIRWNHPRNG 635

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   +F+ +AEE+ +I  I  ++L  + + I +W+ Q     + + +NI+ K L    L
Sbjct: 636 LLLPEKFIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVN-NLKVAVNISPKHLRFRHL 694

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  ++S+       I+L  +ES+++         L  L++IGI +++DDFGT  S L
Sbjct: 695 PIRINEILSEFQVKSESIELELTESILIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCL 754

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P D +K +   +      +   A++++II MAKN+   +IA+ I  +  ++ L 
Sbjct: 755 SYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKHQLEILQ 814

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
            +GC Y Q  +   P+      + L+
Sbjct: 815 NLGCHYGQGYYFYHPMPPEKCTQFLQ 840


>gi|332185589|ref|ZP_08387337.1| sensory box protein [Sphingomonas sp. S17]
 gi|332014567|gb|EGI56624.1| sensory box protein [Sphingomonas sp. S17]
          Length = 871

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 157/740 (21%), Positives = 308/740 (41%), Gaps = 20/740 (2%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
              +L  +      L+      S +L + +A +  A+  + + F  +             
Sbjct: 27  LLSILQNLVAIAIVLAISWRHDSRDLFLEKAAAGAAIHLATLAFGMVLWRGEARQWPFYR 86

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           +    +    ++   +    ++ A     T         +  ++  M         +  +
Sbjct: 87  LKQWLVVMGFVIAVATSPLLLIIAQAHDGTAGWASALTLFGAMWATMAMLYPVRGAMIGY 146

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
              F +   +           +   A++  L  IV+                +Q      
Sbjct: 147 SFGFAFLAPIAALAWG-AALPLTLAAVLSPLTFIVLNARRAGQMDYDLAAARAQAFGQGQ 205

Query: 405 ERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           +   +       G+G   W+ D        +  +A  L        G +   L  +  + 
Sbjct: 206 QAVKMIAEFEEHGTG-WFWETDRHGRLTYLSNKVAQDLRAIGIDATGRLLTDLFQMDSS- 263

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                  L   +  R     Y     ++D   Q  W  I  RP+ +  G    + G  +D
Sbjct: 264 APGTERTLSFHMASRTSFSDYTVCAASSDPLAQERWWSISGRPIIDGIGRFRGFTGSGSD 323

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE+++S   I   A  D LTG+ NRQ     L   L  S  +      + ++D+D++K 
Sbjct: 324 LTEKRRSEAEITRLALFDGLTGLANRQRMKLSLDKTLKQSV-NPYRPTALFLMDLDRFKA 382

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L  + RR+ + +    ++ RL G+ F I+L   +   +++  A  + 
Sbjct: 383 VNDTLGHQAGDLLLQQVARRLEQTVGDVGLVGRLGGDEFQILLPGIDQRERLSALATDII 442

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +++ P ++   E+T+  SIG A        S  +++NA+L +Y AK  G      +  +
Sbjct: 443 ATLSRPYDIQGVEVTIGCSIGIAIAPHDGDDSQALIRNADLGLYAAKGDGRGVHRFYAEA 502

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  ++EDL +A+   + +LVY P++   +  IVG EAL++W HP  G+I   +
Sbjct: 503 MLEGARSRKRMEEDLRIAIAQGQFHLVYQPVVSTREARIVGYEALLRWTHPTQGDIPPGQ 562

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I+ I  +++     +  SW       P  + +N++S       L   +  
Sbjct: 563 FVPVAEECGLIEQIGEWVMRTACLEAASWP-----IPARVAVNVSSVQFTKPNLTALVAQ 617

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++++  +PSR++L  +ESV + + + S      L+ +G+ L LDDFGT  S L YL + 
Sbjct: 618 ALTQSGLAPSRLELEITESVFLRDNQESERKFAALKALGVRLALDDFGTGYSSLGYLRHA 677

Query: 877 PFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           PFD +K + S +    G+  +  AI+R+I+ +A  +     A+ +  + +I+ +  +GC 
Sbjct: 678 PFDKIKIDQSFVRGAVGTGSRNAAIIRAIVTLADTLGMETTAEGVELQDEIELIRELGCS 737

Query: 934 YIQDSHVASPLGFNSILKLL 953
           +IQ      P+  + + ++L
Sbjct: 738 HIQGFVYGRPVPVDEVHQML 757


>gi|114563820|ref|YP_751333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114335113|gb|ABI72495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 714

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 127/621 (20%), Positives = 264/621 (42%), Gaps = 29/621 (4%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLATGYFSQGIFSDGERQSLAVL 412
           + +  +  + +   +    +   V      +I   Q +       + + +  E    +  
Sbjct: 88  VRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQEELLATTTELLRESQE 147

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                 W  ++    +  T +   I           +   + Y+  + +  F+  LD+ +
Sbjct: 148 IGKLGGWQLNLHNGDLIWTDETYRIYETTPQEYIPTVEMGVSYLLPDSKKLFQEALDAAI 207

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL------ 526
                    E        Q   +          +G   +  GI  DIT++K +       
Sbjct: 208 -QLGEEYDLELETYTTKGQKIDVRTTCHVTY-VDGVAEKLSGIFQDITDEKNNQRKLEKS 265

Query: 527 --------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
                   E +   A  D LT +PNR    DR+   L  +  +   +  +  +D+D +K+
Sbjct: 266 NQVLKEVNEKLKFAANYDPLTHLPNRNLLADRMQQALIKAQRNSK-QIAIAFLDLDGFKE 324

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G  +GD+ L  +  R    ++  D LAR  G+ F +IL   ++  + ++    + 
Sbjct: 325 VNDAYGHDIGDEFLCLIANRFKTAIREDDTLARFGGDEFVLILDDLDSHQEASEILQRIL 384

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            SI     +  + +++T SIG   +      +  ++++A+ AMY AK +G N +  F   
Sbjct: 385 SSITEIFIIENKRLSITVSIGVTFFPQDNSHADILIRHADQAMYRAKEQGKNCIHEFDFE 444

Query: 699 SFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +  + ++    ++  +     N+E  L Y P I +   EI+GLEALI+W HP  G +S  
Sbjct: 445 NDVAIKLQYRELEYII-NGFNNNEFLLFYQPKINMESNEIIGLEALIRWQHPTEGLLSPF 503

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+   EE  +   +  +++++  +    WR    +  I I +N++   L   +  + + 
Sbjct: 504 RFLPYIEEEPLAIELGKWVIDQAIKQHNEWRRLGIV--IPISVNVSPLQLQHEDFIKQLN 561

Query: 816 ALI-SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++   T +   +++    ES ++ + +    ++ + +++GI  +LDDFGT  S LSYL 
Sbjct: 562 EILFLNTSFQAGQLEFEILESSIIKDTQHIAEVISQCKQLGIRFSLDDFGTGFSSLSYLR 621

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +          AI++S+I ++K    ++IA+ +  +   ++L +MGC
Sbjct: 622 KLKTDVIKIDQSFVIDMLDDMDDQAIVKSVIELSKTFGRSVIAEGVETQEHGRQLLKMGC 681

Query: 933 DYIQDSHVASPLGFNSILKLL 953
              Q   +A P+  +SI + +
Sbjct: 682 QLAQGFGIARPMPASSIPEWI 702



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
            L +  +   VWDW +  D +      A I+G     +     + WL  +H +D      
Sbjct: 12  ELVLDATNVGVWDWRVENDGLVCNERWAEIIGYTLSELMPVDYQTWLDVLHPDDLPKAIK 71

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525
             D     +    + E R++     + W++   + +  +  G   R IG+  +IT +K+ 
Sbjct: 72  NYDYHCQGQSELCELEVRLKHKSGHYVWVLSTGKAIAWDVEGKPTRMIGMHQEITFRKRQ 131

Query: 526 LE 527
            E
Sbjct: 132 EE 133


>gi|171319088|ref|ZP_02908211.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria MEX-5]
 gi|171095686|gb|EDT40643.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria MEX-5]
          Length = 749

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 127/573 (22%), Positives = 247/573 (43%), Gaps = 23/573 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++ +    E   L V    + +         + + P    ++ +  G + G   + +  
Sbjct: 182 IARQLVHSEEHHRLVVNSLNEGILVVSPDGVVIASNPSANRMMRVK-GELVGRRLSSVIL 240

Query: 456 ---------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS- 505
                    I  ++  +        +      L Y      AD    W+     P+    
Sbjct: 241 YKLREDGTPIAPDEWPSRLA-----LTTATPLLDYSAGFGLADGDIIWVRGNAVPIVKPG 295

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNL 564
                  +   +DI   +++ + +   A +D LTG+ NR+   +R+  +     A     
Sbjct: 296 ETRPESVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGARDAAAGPA 355

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  ++ ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   
Sbjct: 356 RVAILFIDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGGRHALTRVGGDEFVILVDQC 415

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++  +++  A  +  +IA P  +   E  +  SIG +        +  +++NA+ AMY A
Sbjct: 416 DDPDELSALAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDA 475

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG NH   F        +    I++ L  A+ +  L L Y P++       VG EAL+
Sbjct: 476 KQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAIASDALRLAYQPVVDARSGRTVGAEALL 535

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ 
Sbjct: 536 RWTSPELGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSP 594

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +      L E +   +++T   P  ++L  +E ++M + +    +L  L  + + +++DD
Sbjct: 595 RQF-HEGLVESVDRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDD 653

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  
Sbjct: 654 FGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVET 713

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   + L ++GCD  Q      PL      + L
Sbjct: 714 QAQSRFLQQIGCDMQQGYLFGRPLDPTDYARRL 746


>gi|23501126|ref|NP_697253.1| sensory box protein [Brucella suis 1330]
 gi|161618200|ref|YP_001592087.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|254705393|ref|ZP_05167221.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|260567150|ref|ZP_05837620.1| PAS-associated domain-containing protein [Brucella suis bv. 4 str.
           40]
 gi|23346999|gb|AAN29168.1| sensory box/GGDEF domain/EAL domain protein [Brucella suis 1330]
 gi|161335011|gb|ABX61316.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|260156668|gb|EEW91748.1| PAS-associated domain-containing protein [Brucella suis bv. 4 str.
           40]
          Length = 703

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDFD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG   DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGFVEDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|172062985|ref|YP_001810636.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria MC40-6]
 gi|171995502|gb|ACB66420.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria MC40-6]
          Length = 749

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 127/567 (22%), Positives = 247/567 (43%), Gaps = 11/567 (1%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++ +    E+  L V    + +         + + P    ++ +    +   + + + Y
Sbjct: 182 IARQLVHSEEQHRLVVNSLNEGILMLSPDGVVIASNPSANRMMRVKGELVGRRLSSVILY 241

Query: 456 IHINDRDNFR-TILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNS-NGDILR 511
               D          S + +       ++ V    AD    W+     P+          
Sbjct: 242 KLREDGTPIAPDEWPSRLAFTTATPLLDYSVGFGLADGDIIWVRGNAVPIVKPGETRPES 301

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMV 570
            +   +DI   +++ + +   A +D LTG+ NR+   +R+  +     A     R  ++ 
Sbjct: 302 VLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGTHDAAAGPARVAILF 361

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   ++  ++
Sbjct: 362 IDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGGRHALTRVGGDEFVILVDQCDDPDEL 421

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +  A  +  +IA P  +   E  +  SIG +        +  +++NA+ AMY AK RG N
Sbjct: 422 SALAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGRN 481

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           H   F        +    I++ L  A+ +  L L Y P++       VG EAL++W  P+
Sbjct: 482 HFTFFTAQLNLRLQRRFAIEQSLRRAISSDALRLAYQPVVDARSGRTVGAEALLRWTSPE 541

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ +     
Sbjct: 542 LGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-HE 599

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L E +   +++T   P  ++L  +E ++M + +    +L  L  + + +++DDFGT  S
Sbjct: 600 GLVESVGRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDDFGTGYS 659

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  E     
Sbjct: 660 SLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVETEAQSWF 719

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L ++GCD  Q      PL      + L
Sbjct: 720 LQQIGCDMQQGYLFGRPLDPADYARRL 746


>gi|118590505|ref|ZP_01547907.1| PAS:GGDEF protein [Stappia aggregata IAM 12614]
 gi|118436968|gb|EAV43607.1| PAS:GGDEF protein [Stappia aggregata IAM 12614]
          Length = 919

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 142/635 (22%), Positives = 262/635 (41%), Gaps = 25/635 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI----------VILIGFTVI 387
            L  P      I  +G    +  R+ +  +   L   + L            ++  F  +
Sbjct: 281 RLFTPFLFYTAILAVGAAFLV-NRITSAGLGRLLTYAMSLRQDKVVSPPPPGLIFEFNKL 339

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             +       + + +   +    + GS   V         +     +  + G   G    
Sbjct: 340 ATMFQ--AAFESVRNRDAQFKDMIDGSMHGVLVH-ANHRILYVNDALLKMCGYEPGDPKQ 396

Query: 448 PIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            + +    ++   +    R+  +           YE +    D +  W+   +R      
Sbjct: 397 LVDSPTLVLYAPEEHSRLRSYYNMRENGSGAPRAYEVKGIRKDGETLWLEQHVRLTEWR- 455

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+   Y     DI+E+K+  E    NA  D LTG+PNR+ F+DRL   L        L  
Sbjct: 456 GERAYY-ATITDISERKRQEELATKNANFDILTGLPNRRLFMDRLRQALQRGKHMGELT- 513

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M++D+D++K +N+  G   GD V+ ++  R+ + L     +AR+ G+ F IIL +  +
Sbjct: 514 ALMILDLDRFKTVNETYGPKAGDKVIEAVAARLTKTLGPDQTVARIGGDEFAIILSNPED 573

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTA-SIGFASWTSSKITSSEMLKNAELAMYHAK 685
             +I   A  +  ++  PI+L +    V A S+G A           +L  A+ +M  AK
Sbjct: 574 RWQIEQTARDILTTVGDPIDLEDGSQAVLAGSLGIAVCPHDGTNDEALLMEADTSMLQAK 633

Query: 686 HRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G     F             ++  L  A+E  +L+L + PI+      +V  E L++
Sbjct: 634 VDSGASYRFFATRMNEQTARASQVEIALRQAIEKGDLHLNFQPIVDYERNRVVSCETLVR 693

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W  PK G +  +EF+ +AE+  +I  +   +L        S           I +NI+ +
Sbjct: 694 WTDPKLGVVPPAEFIKVAEDCGLIVPLGEQVLREACAFFQSCNRNGLQLDG-ISVNISPR 752

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTLDD 862
              D +    ++ ++ +T   PSR++L  +ESV+  +   +   +L  + K+GI ++LDD
Sbjct: 753 QCRDADFLPRLEDILGETGMDPSRLQLEITESVMFDDQRINPVEILQAISKLGIKISLDD 812

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS+L  +P DT+K + S + G    +   A++R+II MA ++   ++ +    
Sbjct: 813 FGTGYSSLSHLKRLPIDTLKIDRSFIMGLERDQDGQALVRAIISMAASLHIDVVCEGAET 872

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + +   GC  IQ    + PL      + L  
Sbjct: 873 HEQCELIHSFGCSLIQGYSFSRPLSGIDFQRYLAN 907


>gi|261756108|ref|ZP_05999817.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 3 str. 686]
 gi|261745861|gb|EEY33787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella suis bv. 3 str. 686]
          Length = 709

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDFD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG   DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGFVEDITERREIEKRMVHIAMHDSLTGLPNRAYFPHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|294011509|ref|YP_003544969.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674839|dbj|BAI96357.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 840

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 132/574 (22%), Positives = 252/574 (43%), Gaps = 10/574 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++ + A     + + +  ER  LAV  +   +WD+D V    T + +  T+LGL+  
Sbjct: 266 YGTLEDIHAQKLAQRELANSEERFRLAVQSARLGIWDFDAVAGTRTWSREFRTMLGLSDT 325

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAAD-NQFHWMIIRIRP 501
                    L  +H  DR     +LD     R     +   RV  AD     W+      
Sbjct: 326 E-PATSELALRLVHPEDRPRLAEMLDVVASERMPPHFEATLRVYRADTGALRWIKSVGWS 384

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             + +G  LR I    D+TE++ S E I   A  D +T +PNR  +   L  + + +   
Sbjct: 385 SFSDSGKPLRVIVTFQDVTEERNSEERIRWAATHDPMTRMPNRALWQATLEEMTEQARRT 444

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++++DID  K+ ND LG   GD +L    +R         ++ RL G+ FG+I 
Sbjct: 445 GE-SFGLILVDIDDLKRTNDTLGHDAGDALLCGFAQRFASCAPADAMIGRLGGDEFGMIA 503

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            S  +S  ++ ++  +   + +P     R +    S+G A +      ++E+LK A+LA+
Sbjct: 504 PSLASSAALSAWSAELLGGVRVPYVHNGRSLDYGISMGGAVFGEHGEDAAELLKAADLAL 563

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y +K  G   +  F+       +    +      A+ +  +   Y P   +    I+G E
Sbjct: 564 YASKSTGRGRLTLFQSQLRADAQQRSSMIHMARQAIVDDLVVPYYQPKADMRTGRILGYE 623

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP+ G  S        +   +   +   ML ++ RD+  W    + P   + IN
Sbjct: 624 ALLRWEHPRTGVHSPDTIAAAFDNAELAVELTEKMLAKVVRDVDRWLRAGHDPG-RVAIN 682

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            ++ D + ++  + + A +++    P + ++  +E+V +G   E+    L RL   G+ +
Sbjct: 683 ASAADFIQHDFADYVLAHLARCAVPPQQFEIEVTETVFLGRGAEQVERALHRLSSAGVRI 742

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  + LS+L   P D +K + S ++   +      I+ +I+ +  ++   ++A+
Sbjct: 743 ALDDFGTGYASLSHLKQYPVDVLKIDRSFISNIEQDAGDAVIVDAIVKLGSSLGMEVVAE 802

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +     ++ L   GC   Q   +  P  + ++ 
Sbjct: 803 GVETAGQVEMLIARGCTIGQGYLMGRPRPWAAVR 836



 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            I     +H L     +  +    +    +V  S  + W      D     P    + G+
Sbjct: 137 TIEDIDERHDLDRHALAAALAESRQHYRWSVELSPQVPWTASASGDIEEVGPRWQELTGI 196

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A     G  R W+  +H +D D    +    +      +  ++R+R +D  + WM  R  
Sbjct: 197 APARARG--RGWIDSLHPDDVDRTLAVWSEKLRT-GDPVDVDYRLRLSDGGYRWMRSRAS 253

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEG 528
              ++ G I+R+ G   DI  QK +   
Sbjct: 254 ARRDAKGRIVRWYGTLEDIHAQKLAQRE 281


>gi|52841126|ref|YP_094925.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|54296911|ref|YP_123280.1| hypothetical protein lpp0952 [Legionella pneumophila str. Paris]
 gi|52628237|gb|AAU26978.1| sensory box protein/GGDEF/EAL domains [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53750696|emb|CAH12103.1| hypothetical protein lpp0952 [Legionella pneumophila str. Paris]
          Length = 771

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 137/576 (23%), Positives = 264/576 (45%), Gaps = 16/576 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGL--ASG 443
           +        +    +   +  A+  S   V   D+ ++    +        I G      
Sbjct: 196 YSFRDVTQKRMALDELRIRERAIEASTHGVVIIDVTKNENKVIYVNRAFERITGYGEQHA 255

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G +      +   +       +             E      + +F+W  I + P+ 
Sbjct: 256 LGKGLLTLLGSNLEEVNHKRIELAIRESKEE-----TIEMESIKRNGEFYWCEISVAPVK 310

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S G +  YI I ND+T+++   + +L  A  D+LT +PNR   +DR+   +  +  +  
Sbjct: 311 DSFGYVKHYICILNDVTQRRDMEDQLLLQATYDSLTNLPNRVLLMDRVEQAILQARKN-K 369

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                + +D+D++K  ND LG ++GD +L ++  R+  + +  D +ARL G+ F I+L  
Sbjct: 370 AILAFLFLDLDRFKLTNDTLGHSMGDKLLQAIANRLLIVTEDFDTVARLGGDEFVILLTD 429

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +N L+    A  + K I  PI + +  + +T S+G + +         ++K+A+L+MYH
Sbjct: 430 IDNMLEAETIAQNILKIIEKPIQIDQHSLKITGSLGISFYPRDGDDYESLMKSADLSMYH 489

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +   ++    + + +   L  A++N EL+LVY P+I L    +VG EAL
Sbjct: 490 AKDTGRNNYRVYEPEMNRRVINHMQLDNALRDALKNDELFLVYQPLIDLKQSRVVGFEAL 549

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W     G +S ++F+ +AEE  MI  +  + +++    +  W        + I +N++
Sbjct: 550 MRWHSKILGLVSPADFIPMAEENGMILEMGEWAMKQACIQVKEWHKA-GFKNLSIAVNLS 608

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L E +  ++  +      ++L  +ES+++ + +     +  L+ +G  L +D
Sbjct: 609 GRQFRQKNLPEVVSRVLKSSGLQSRFLELELTESLLIEDIDHVVDTMYALKDMGTKLVID 668

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P D +K + S +T     +   AI ++II +  ++   ++A+ + 
Sbjct: 669 DFGTGYSSLSYLKQFPVDKLKIDRSFITEMVSNQNDAAIAKAIINLVHSLNLQVLAEGVE 728

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     +T  GCDY Q     +P    +IL+ LK 
Sbjct: 729 NEFQRDFITSHGCDYAQGYFFKAPDTPENILEFLKS 764


>gi|67924578|ref|ZP_00517994.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
 gi|67853577|gb|EAM48920.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
          Length = 860

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/567 (22%), Positives = 257/567 (45%), Gaps = 13/567 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNW 452
                 + +  +R       S + +   +      V        +LG +S  + G     
Sbjct: 281 RKREIKLTTGKDRYRFFFEQSTEGILVINPDTKHIVEANQAYCKLLGYSSADIIGCNLYQ 340

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L  I   +R++F  IL+         ++  F  R  +     +  +I   +    ++L  
Sbjct: 341 LLEI---ERESFNQILEQITPDNPYIIRESFH-RHQNGSLLAVAGKINLTNYQRQEVLCL 396

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DI ++K++ E +      D LT +PNRQ F  +L T L  +   ++L   V+ ID
Sbjct: 397 V--VRDIRDRKQAEEELQYQLLHDPLTNLPNRQLFKQQLATALAHAKRHEHL-MAVIFID 453

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +  IN+ LG ++GD VL S  +R+   ++  D++ R   + F ++L    N+     
Sbjct: 454 IDSFTHINNTLGHSLGDKVLQSFAKRLSSCIRAGDMVNRWGSDEFVVLLPQIKNTEDTVK 513

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + +  P+ L +  + +  SIG A +      +  +LKNA+ A+Y  K +G N+ 
Sbjct: 514 LAQRIFEILQRPLILGKHRLQIKCSIGIAIYPQDGDNAEGLLKNADTALYRTKEQGKNYY 573

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +     +     + ++  L  A+E  + +L Y P +     +IVG+EAL++W++P +G
Sbjct: 574 QFYSPHLTAEAEILMRLESLLHQALEKKQFFLEYQPQLEYKTGKIVGMEALLRWENPAFG 633

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ +A +  +I  ++ ++L+      +SW+     PPI + +N+++K+     L
Sbjct: 634 VIMPQKFLPLAAKTNLILHLSKWVLKTACEQNLSWQKDNL-PPIPVTVNLSAKEFQQPHL 692

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + +++ +T   P  ++L  +E  +  N   +R  L  L+ +G+ + LDDFG   S L
Sbjct: 693 ATVVASILDETGLDPQWLELEITELTLRQNLNLARKTLQDLQNLGVRIALDDFGCGFSSL 752

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL    F T+K +   +           ++ +I+ + K     ++A+ +     +K L 
Sbjct: 753 GYLKQFSFRTLKLHQDFVRDLRGTSEELGLISAILAIGKGFNMRVVAEGVETSEQLKILE 812

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
            + C  IQ    + PL      +LL +
Sbjct: 813 DLDCREIQGYWFSHPLPTKEATELLSK 839


>gi|152984740|ref|YP_001351543.1| hypothetical protein PSPA7_6232 [Pseudomonas aeruginosa PA7]
 gi|150959898|gb|ABR81923.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 951

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + RR+       + LARL+G+ F I+L 
Sbjct: 556 G-ELALLLIDLDRFKLLNDSLGHEVADQLLREMARRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGAAALSRLAERLLAQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  A+E  +L + Y P + L        EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLESRLRKAIEEGQLDVHYQPKLCLASGRPDSAEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  + F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEDGMIPPATFVGLAEECGLIGEIGEFVLRRACLQAAEWNARG--LSVRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L E +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLEVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSI 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +   T+     AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNGEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETTEQRDFLVAQRCDELQGYLIGRPLPAHAVEEGLRQ 949



 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                 G  SQ +     R ++A+  S   +WDWD+   RV  +  +  I    +G   G
Sbjct: 260 ARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-HLEAIFS-DAGDGPG 317

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506
             R  +  IH  D    R  L   +  R    + E+RVR  +  + W+  R R M  +  
Sbjct: 318 DYRRLIENIHPGDLPRIRRALAEHLKGRSELYRVEYRVRGREGGWRWLEDRGRAMARDPR 377

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G + R +G  +DI+ +K+  E     A 
Sbjct: 378 GRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|95929024|ref|ZP_01311769.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134925|gb|EAT16579.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 774

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 162/758 (21%), Positives = 337/758 (44%), Gaps = 30/758 (3%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL----I 266
           ++ R    + +  + + ++  I +       + +  + +L I +    +   S+L    +
Sbjct: 28  LITRVRWQLISAIVVFCLVAEIML-------VWSQSTFDLSILQYALLLGTLSTLNLYNL 80

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           I+ + YL   R+           I  + +L   +         +  + L + +       
Sbjct: 81  IYHYYYLKIARFAFIDHLHILLDIFVVTVLIHFTGGGNSW---LWPLYLVTTIEAAFLLE 137

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL----I 382
               + G      L  AW LI   +  L            +    +  L L V L    I
Sbjct: 138 NRRDVLGIGALNGLFYAWALIAGHYNLLPYIYQPLDGTPALSETFLLLLWLWVTLLNTAI 197

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            F       A    +    +   R    +  + D++  +              +IL +  
Sbjct: 198 AFICTFLTHALRRKTAEASTLARRLGNFLNHANDLIIQFRPDGTIDYANQASRSILNIDP 257

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRP 501
            S    I      I   DR  ++  +   +         E  +R  +D Q   +   +  
Sbjct: 258 DSNEINIS---SLIDPTDRPRWQRQV-LLLENGTSFPATELLMRTNSDQQAIILDSNVTL 313

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +  ++G    + GI  DIT ++++   +      D LTG+ +R +F++R   +  ++   
Sbjct: 314 LEENDGQWTLW-GIFRDITARRQAEARLDQLTNFDQLTGLAHRSNFMERAEQVTLMAKR- 371

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +      ++I+ID++K IND LG A+GD+VL ++++R+   ++  D++ RL+G+ F I+L
Sbjct: 372 ERKNTAFLIINIDRFKLINDALGSAIGDEVLKAVSQRLLNQVREVDVVGRLNGDEFVIML 431

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           ++  ++  + + A+ + +++   I +   E+ +T S G A +     T  E+LK AE+A+
Sbjct: 432 VNVESADIVHNLAVKITQALTPMIAINSHELFLTTSTGIALYPQDGDTPEELLKQAEIAL 491

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
              K  G N ++ F       ++ R+ +   L LA++  +  L Y P + +   +I  +E
Sbjct: 492 LSVKSTGRNGIQFFTDQIDLNQNSRLRLLNGLHLALQQQQFVLHYQPKVNIHTGQITSVE 551

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W+HP+ G +  +EF+ +AEE  +I  I  ++LE   R  + W+ Q   PPI + +N
Sbjct: 552 ALIRWNHPEMGWVMPTEFIPLAEESGLIGIIGRWVLEEACRQCLIWQQQGL-PPIRMAVN 610

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +   L    L + +  ++ KT  +   +++  +E+V+M NPE +  +L  ++K+G+ + 
Sbjct: 611 FSGHQLQQESLLKSITDVLKKTGLAAQWLEVEITETVIMQNPEVTINILQAIQKLGVHIA 670

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K + + +     ++   AI+ +I+ M   ++  I+A+ 
Sbjct: 671 IDDFGTGYSSLAYLKRFPVNTLKIDRAFVRDIEQSDTDAAIVGAILKMGATLKLNIVAEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      K L +  C  IQ    +  +    I++++++
Sbjct: 731 VETHGQRKFLEQHNCHEIQGFLYSPAVPPERIVEMVRQ 768


>gi|307304385|ref|ZP_07584136.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sinorhizobium meliloti BL225C]
 gi|306902587|gb|EFN33181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sinorhizobium meliloti BL225C]
          Length = 1071

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 127/581 (21%), Positives = 248/581 (42%), Gaps = 32/581 (5%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              +         +   +  ++ S  +  + D V   D          +   +L +   ++
Sbjct: 509  AKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLLDADWRVRYLNENARKLLQVGDEAL 568

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                R +       +  +F       +  R      +    ++     W+     P  + 
Sbjct: 569  G---RVFWKLFPEEEEGSFAKHCREVMDRRVRSFFEDH--LSSLG--RWVEANASPTRD- 620

Query: 506  NGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                        DITE++++ E        +   A  D LTG+ NR  F +     L+ S
Sbjct: 621  -----GISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNES 675

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               ++ R  V+ +D+D +K +ND LG   GD +L  ++ R+ + ++  + +ARL G+ F 
Sbjct: 676  ---NHARMAVLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFA 732

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            II     +  +    A  +  +++ P ++      V  SIG A       ++ E++K A+
Sbjct: 733  IIQPLTESRDEAFRLAQRLIDTLSEPFSIEGASANVGTSIGIAFAPEDGTSADELIKAAD 792

Query: 679  LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            +A+Y AK  G    + F   + +       +K  +  A+   E  L Y P++ L    + 
Sbjct: 793  IALYSAKSSGRGTYKLFDVAMHAQLQAHQQMKITMRDALAKGEFELHYQPLVSLESRCVS 852

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              EAL++W HP+ G I+ SEF+ IAEE  +I  I  ++L    R    W ++     + +
Sbjct: 853  CCEALLRWRHPERGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPER-----VSV 907

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N++        L   +   +S T   P+R++L  +E+V++   E +  LL  LR++G+
Sbjct: 908  AVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGV 967

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
             + +DDFGT  S L YL   PFD +K + + +      +   AI++++  + +++  T  
Sbjct: 968  KIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTS 1027

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + +  E  +  +   G + +Q    + PL    I KL+  
Sbjct: 1028 VEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAAEISKLIAA 1068



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + V++ +      +  +     R       +  ++W  D   D            G    
Sbjct: 248 YGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  IH +DR   +         +   ++ E+R+R AD  + W+I   +P  
Sbjct: 308 EALG--FGWVDVIHPDDRQAVQETFFRATAGK-EPVRSEYRLRRADGSWAWVIDVGQPRF 364

Query: 504 NSNGDILRYIGIANDITEQKKSL-EGILCNAF 534
           ++NG  L Y+G   DITE++ +        AF
Sbjct: 365 SANGSFLGYVGSVLDITERRAAEIAQQEAQAF 396



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                I  +       + + +  E     V     + W  D   + +   P  + + GL 
Sbjct: 120 FVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTADTAGEVLEVGPRWSELTGLG 179

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W   +H  D    +      +         E+R+      + W   R   
Sbjct: 180 EKETLGS--GWAKAVHPQDAGALQEEWRRSLA-SGAPFDCEYRLLTKTGDYRWFRARAAA 236

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
             +++G I+R+ G+  DI E++++ + + 
Sbjct: 237 KRDADGKIVRWYGVLEDIDERRRAADDLR 265



 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 103/320 (32%), Gaps = 34/320 (10%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           QP        +  +     I    A     Q   +           S D V   D+    
Sbjct: 361 QPRFSANGSFLGYVGSVLDITERRAAEIAQQEAQA---FIRSIFDSSPDCVRVLDMEGRP 417

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        I GL  G+     + W      +D D      +S    +  R   E  VR 
Sbjct: 418 LLMNEAGRRIFGLNEGAPV-TGQTWDSIGRASDADKVEAAWESVRRGKTARF--EISVRD 474

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           A  +   M +   P+++ +G   R + I  DIT+ K++ + I               ++ 
Sbjct: 475 AGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRH--------AEAA 526

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGI--AVGDDVLVSLTRRIGELLK 604
            D+L+++L      ++   +VM++D D + + +N+       VGD+ L  +  ++    +
Sbjct: 527 ADQLSSVL------ESTMDSVMLLDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEE 580

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
                       F        +  ++  F      S+   +           SI     T
Sbjct: 581 EGS---------FAKHCREVMDR-RVRSFFEDHLSSLGRWVEANASPTRDGISIFCRDIT 630

Query: 665 SSKITSSE-MLKNAELAMYH 683
             +    + +L   ++A   
Sbjct: 631 ERRRAEEDTLLAQKQMAHMA 650



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +     + G  + V   D     V        +LG     + G   +    I   ++
Sbjct: 12  RSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD---ILPGEQ 68

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDI 519
            +    LD  V       + E ++   D     ++ + R +S   G       +    DI
Sbjct: 69  ADRIVSLDRIVLSTSEGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDI 128

Query: 520 TEQKKSLEGILCNAFQ 535
           T  +++ E +  +   
Sbjct: 129 TNLRRTEETLRASEEH 144


>gi|186470691|ref|YP_001862009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184197000|gb|ACC74963.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 918

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 132/569 (23%), Positives = 246/569 (43%), Gaps = 22/569 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWD---WDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
             +        +S A+  S + V      D              I G ++          
Sbjct: 349 AHEHAKESLRIRSRALDASRNAVIISRKIDGNSTITYVNAAFERITGRSATEAID--AEL 406

Query: 453 LPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              I  +    D  + R  + +     R       + R  D   +W+ + + P+ +    
Sbjct: 407 WNLIGCDISTPDARSVRMAMRAECEGARL-----LQCRKPDGSIYWIDLHVAPVLDEQDR 461

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++ + +D++E+ +  E +   A +D LT +PNR      L  +   +  + N +  +
Sbjct: 462 PTHFVTVFSDVSERVRYQEQLRIQAHEDALTRLPNRLGLKATLADMFGRAVAEGN-KLAL 520

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D +K++ND LG   GD VL  + RR+   +   +I+ R +G+ F   L    +  
Sbjct: 521 VFLDLDNFKEVNDTLGHTAGDQVLCEVARRLSGAVSRDEIVVRYAGDEFVAALYGRGDID 580

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +    A AM++++   + +  R I   AS+G A +         +L+ A+ AMY AK  G
Sbjct: 581 RFMAAATAMKETLTHALTVDNRLIVPQASVGVAVFPDHTQDPDTLLQYADAAMYRAKSAG 640

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +  F       D     + + L  AV +    L Y P +     +  G EAL++W  
Sbjct: 641 PNSILLFNHDIAIQDNRRATLAQALRHAVASEAFSLAYQPRVNPATGKASGFEALVRWHD 700

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G+IS S F+ IAEE  +I  I  ++ E+  R   +W   +  P I + +N++     
Sbjct: 701 PEHGDISPSLFVPIAEETGLIVQIGQWVFEQACRQTRTW-AASLHPDIVVSVNVSPVQFE 759

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            ++L   + + + +T  S   ++L  +E V+M     S   L  LR++G+S+ +DDFGT 
Sbjct: 760 RSDLPAMIASTLERTGVSARNVELEITEGVLM--APGSLATLRALREMGLSIAIDDFGTG 817

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L Y+     D +K + S + G   +     I+R+++ M + +   ++A+ +     +
Sbjct: 818 YSSLGYIRSFLADRLKLDMSFVQGIGRSHADEVIVRAVLAMGRTLGMRVVAEGVETLGQL 877

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + L   GCD +Q    A P+  N     L
Sbjct: 878 EFLIDNGCDEVQGYWFARPMDANWAHAYL 906


>gi|237745833|ref|ZP_04576313.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229377184|gb|EEO27275.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 969

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 145/584 (24%), Positives = 254/584 (43%), Gaps = 16/584 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           I  ++    +QH            +  +        + D++   D     +        +
Sbjct: 389 IFFILRHRHMQHQTERLKMGLKQKALRQHYDYLSKFANDVIILMDGTGTVIEVNDRSEKM 448

Query: 438 LGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            G     + G  IR        +D   F          R   L +E   + A+     + 
Sbjct: 449 FGKVRSELIGKNIRTVFDL--KDDFA-FEEKWGELQQER--SLIFEAYGQHANGSIFPVE 503

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           I  R +  + G  L    I  DI+E+KK+ E +  +A  D +TG+ NR+ F +RL     
Sbjct: 504 ISSRVI-EAEGR-LFIQFIIRDISEKKKAEETVWRHANFDQITGLANRRMFSERLFFETR 561

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +         +M +D+D +K +ND LG   GD +L     R+   ++  D +ARL G+ 
Sbjct: 562 KAQRT-GASVALMFLDLDHFKDVNDTLGHGAGDTLLKEAGDRLTRCVRETDTVARLGGDE 620

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +IL    +   +   A  +   ++ P  L  + + ++ASIG   +      + +++KN
Sbjct: 621 FTVILTDLADFRDVERVAQNILDELSEPFTLEGQPVHISASIGITFFPEDAADTHDLMKN 680

Query: 677 AELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  GGN    F  S       R+ +  DL  A+EN++   V+ PI+ L   E
Sbjct: 681 ADQAMYAAKSMGGNRYHYFTQSMQEAVQQRMHMINDLHGALENNQFETVFQPIVDLKTGE 740

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I   EALI+W HP  G I+ + F+ +AE+  +I+A   ++    AR     R    +P  
Sbjct: 741 ICRAEALIRWHHPVHGVINPASFVPLAEDTGLIQAFGDWVFLEAARQAARCRK--YIPGF 798

Query: 795 FILINIASKDLLDNELCEGM-QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + +NI+     +  +   +  A +      P  I +  +E +++   E     L  LR 
Sbjct: 799 QVSVNISPVQFKNGGINTDVWFAHLKSLELPPQAIVIEITEGLLLEIDESIADQLLALRD 858

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S L+YL  +  D VK +   +     TE+   +  ++  MA  ++ 
Sbjct: 859 AGMEVALDDFGTGYSSLAYLKKLDIDYVKIDQMFVKNLTITEEDRVLCEAMTLMAHKLDI 918

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +IA+ +     +K L+  GCD +Q  +++ P+G     +LL+ 
Sbjct: 919 AVIAEGVETLAQLKMLSSFGCDCVQGYYISGPVGDQEFEELLQA 962


>gi|170702261|ref|ZP_02893162.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria IOP40-10]
 gi|170132837|gb|EDT01264.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           ambifaria IOP40-10]
          Length = 749

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 128/573 (22%), Positives = 246/573 (42%), Gaps = 23/573 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP------- 448
            ++ +    E   L V    + +         + + P    ++ +  G + G        
Sbjct: 182 IARQLVHSEEHHRLVVNSLNEGILVLSPDGVVIASNPSANRMMRVK-GELVGRRLSSVIL 240

Query: 449 --IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS- 505
             +R     I  ++  +      +        L Y      AD    W+     P+    
Sbjct: 241 YKLREDGTRIAPDEWPSRLAFTTAA-----PLLDYSVGFGLADGDIIWVRGNAVPIVKPG 295

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNL 564
                  +   +DI   +++ + +   A +D LTG+ NR+   +R+  +     A     
Sbjct: 296 ETRPESVLVSFHDIGPVREAQQQLRYLATRDALTGLYNRRWLSERMRELFGTRDAAAGPA 355

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  ++ ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   
Sbjct: 356 RVAILFIDLVGFKKVNDTAGHDAGDALLRSVAARLAACAGERHALTRVGGDEFVILVDQC 415

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++  +++  A  +  +IA P  +   E  +  SIG +        +  +++NA+ AMY A
Sbjct: 416 DDPDELSTLAREVIDTIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDA 475

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K RG NH   F        +    I++ L  A+ +  L L Y P++       VG EAL+
Sbjct: 476 KQRGRNHFTFFTAQLNLRLQRRFAIEQSLRRAISSDALRLAYQPVVDARSGRTVGAEALL 535

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G +S +EF+ +AE+  +I AI  ++LE   R    WR     P + + +N++ 
Sbjct: 536 RWTSPELGPMSPTEFIPVAEDTGLIVAIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSP 594

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +      L E +   +++T   P  ++L  +E ++M + +    +L  L  + + +++DD
Sbjct: 595 RQF-HEGLVESVDRCLAQTQLDPGALELEITEGLLMNDTDTVLPMLEALTDMNVRISVDD 653

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +  
Sbjct: 654 FGTGYSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVET 713

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +     L ++GCD  Q      PL      + L
Sbjct: 714 QAQSWFLQQIGCDMQQGYLFGRPLDPTDYARRL 746


>gi|330825013|ref|YP_004388316.1| PAS/PAC and Chase sensor-containing diguanylate
            cyclase/phosphodiesterase [Alicycliphilus denitrificans
            K601]
 gi|329310385|gb|AEB84800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Alicycliphilus denitrificans K601]
          Length = 1054

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/593 (21%), Positives = 248/593 (41%), Gaps = 32/593 (5%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATILGL 440
               V+Q +       Q +    +     +      V   ++VR R           I G 
Sbjct: 467  HLAVVQDIGERKQMEQALSDSEQHLLGILNHMPVGV---NLVRGRAIAFRNDRHVQICGY 523

Query: 441  ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQ-----YEFRVRAADNQFH 493
                    + +W   +  +  +R   R    +     R          E  + +      
Sbjct: 524  GEQE-APDVDSWWRLVMPDAAERHQAREAWKAACMAARHAADGAIRPVECHITSKAGLLR 582

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             + I    + +S+      I    D ++++++ E +   A+ D LTG+PNR+  LDRL  
Sbjct: 583  TVEISGVMLEDSH------IVTMVDQSQRRQAEEEVRYLAYNDPLTGLPNRRLLLDRLQQ 636

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             L +SA    L   V+++D+D +K IN+  G  +GD +L ++  R+   +   D LAR  
Sbjct: 637  ALAMSARHQ-LCGAVLMLDLDNFKHINETQGHDMGDRLLHAVALRLRACIPEDDTLARHG 695

Query: 614  GNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSK 667
            G+ F ++L          + +     + +  ++  P  L   E    T S+G   +    
Sbjct: 696  GDEFVVVLKDLGASPQEAATRAEAMGLQILDAMREPFALGGGEPRHTTLSVGIVIFQGLH 755

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
             ++ E+LK +++AMY AK  G + +  F             ++ D+   +E  E  L Y 
Sbjct: 756  ESADELLKRSDMAMYEAKAAGRDALRFFDPQVQAQMTARVALEADMRSGLEAGEFELFYQ 815

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P +      I G EAL++W HP  G I  SEF+ +AE+  +I  +  ++L      +  W
Sbjct: 816  PKMVH--GRITGAEALLRWKHPVKGYIPPSEFIPLAEQSGLILRMGQWVLRTACERLALW 873

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                 +  + + +N++ +   +      +   ++ T     R++L  +E +++ + E + 
Sbjct: 874  SSHPVLGQLSVAVNVSPRQFHEAGFVPEVLEALAGTGADARRLRLELTEGLLLQDVEDTV 933

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903
              + +LR  G+  +LDDFGT  S L+YL  +P   +K + S +    +     AI R+I+
Sbjct: 934  AKMVQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDQSFVRDVLTDPNDAAIARTIV 993

Query: 904  PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  ++   ++A+ +  E     L R GC   Q   ++ PL   +   L+ E 
Sbjct: 994  ALGTSLGLQVVAEGVETEAQRVFLERSGCHAWQGYLLSRPLPGLAFEDLVLEH 1046



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQG---IFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTT 431
            L+  ++   V++ V A G   Q    +    ER       +   +   D+  DR V   
Sbjct: 330 ALLTAMVSMLVLRRVRALGDVQQAGVALRESEERFRAVFSQAAVGMAQVDLHSDRMVRVN 389

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +  +LG     +      +       D D     ++     +    + E R    D +
Sbjct: 390 RKLCDLLGYTEAEL--QQLRFQDISDPRDLDADLAFMERMRSGKISEFRMEKRYCRKDGE 447

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             W  + +  +    G    ++ +  DI E+K+  +
Sbjct: 448 IVWAELMVSRLCLE-GRPESHLAVVQDIGERKQMEQ 482


>gi|73543375|gb|AAZ77792.1| PA5017-like protein [Pseudomonas aeruginosa]
          Length = 899

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 149/574 (25%), Positives = 266/574 (46%), Gaps = 12/574 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           I            +   +  + + S       AV  S       D         P   +I
Sbjct: 319 IAFAGELADQYAQVLMNHERRNVSSALHLFQRAVEQSASAFLLIDRDGVVEYVNPSFTSI 378

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
              ++  +     + LP +   +         S +  +    Q EFR R  +++ +W  +
Sbjct: 379 TQYSADEVRNRRLSELPAL--ENLSELLFDARSALTQQN-SWQGEFRSRRKNHEPYWGQL 435

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + +  G++  YIGI  DIT+ K + + I   A++DNLTG+ NR  F+  L   L+ 
Sbjct: 436 SLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANRHYFIGALEERLES 495

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +   +++++DID +K+IND LG   GD +LVSL RR+   L     LAR + N F
Sbjct: 496 S---GDRPLSLLLVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDGATLARFASNEF 552

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L  +    K    A  +   +  P+ +  + I +T SIG AS          ++K A
Sbjct: 553 AVLL-DDTAVEKGESIAAQVLHMLDKPLFVDNQLINITGSIGLASAPQHGCDPQTLMKYA 611

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735
            LA++ AK  G + V+ F  +        +  + +L  A+  +EL + Y P + L   ++
Sbjct: 612 GLALHKAKANGKHQVQVFTEALTAEASYKLFVESNLRRALAQNELAVHYQPKLCLRSGQL 671

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +GLEAL++W HP+ G I    F+ +AEE  +I  I  +++    R      +      + 
Sbjct: 672 LGLEALLRWQHPEKGMIRPDRFISVAEETGLIVPIGKWVIREACRQARELAEAGLGE-LQ 730

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN++ K   D +L   + A++ +     S+++L  +ES+++   + +R  L RL+ +G
Sbjct: 731 IAINLSPKQFTDPDLVGSIAAILHEENIPASQLELELTESLLLDATDDTRQQLERLKSLG 790

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           ++L +DDFGT  S LSYL   P D +K + S +     ++  + I  ++I MA N++  +
Sbjct: 791 LTLAMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDSQDDMEITSAVIAMAHNLKLKV 850

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +A+ +     +  L R  CD  Q      P+  +
Sbjct: 851 VAEGVESAEQLAFLRRNRCDIGQGYLFDRPIPSD 884


>gi|307720562|ref|YP_003891702.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978655|gb|ADN08690.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas autotrophica DSM 16294]
          Length = 936

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/507 (26%), Positives = 245/507 (48%), Gaps = 13/507 (2%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D   +       +  R  +LQ E +    + Q   +     P+   N + +  +GI  DI
Sbjct: 429 DAKKYMNDDQEVIKERIAKLQIEEKQTDENGQTIILSTSKVPLVGINDENIGILGIYEDI 488

Query: 520 TEQKKSLEGI-------LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           T+ K   + I          A  D LT +PNR  F DRL   +D +  +      ++ ID
Sbjct: 489 TDTKNMQQQIVQQSKKLHFQATHDELTLLPNRALFQDRLALSIDNAKRNSQ-DCALLFID 547

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K+IND LG  +GD VL  + +R  + ++  D LAR+ G+ F II+    N   ++ 
Sbjct: 548 LDEFKEINDSLGHHMGDKVLKIIAQRFKQAIREKDTLARIGGDEFVIIVDDYKNIEALST 607

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +  +    I++ E  + ++AS+G + +      +  +LK A+ AMY AK  G  + 
Sbjct: 608 LTQKILDTTNKGIDIGEHVLYISASVGISVYPKDSTDAQNLLKCADAAMYKAKDEGKGNY 667

Query: 693 ESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +          R+ ++  L  A++N    + + P I    +EI+GLEAL++W      
Sbjct: 668 QFYSQEMTQKAMKRISMQSKLRNAIKNEVFDVYFQPQINAQTKEIIGLEALVRWIDENGN 727

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  MI  ++  ++++    ++ WR++       + +N+A K L  ++ 
Sbjct: 728 MIYPDEFIPFAEETGMIVELDRIVMKKALAQVMQWRNENIFTG-SLSLNLAMKQLQKDDF 786

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  LIS +   P +I+L  +ES +M  PE S   L RL+++GI +++DDFGT  S L
Sbjct: 787 ELSISNLISSSKCPPEKIELEITESGLMQKPEESIAKLNRLKELGIKISIDDFGTGYSSL 846

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+  +P   +K + S +      +  I+I+++II +A ++    +A+ +     ++ + 
Sbjct: 847 SYIKKLPISKIKIDKSFVVELPDNKDDISIVKAIIALASSLGLKTLAEGVETAQQLEFML 906

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
             GC  IQ  + A P+      + LK 
Sbjct: 907 ENGCHNIQGYYFAKPMSIEDTTRFLKN 933



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 113/352 (32%), Gaps = 16/352 (4%)

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           ++F  +  + +  +  L  + T  +  NR  + I         L    I      ++  +
Sbjct: 32  HTFIEFFSVFVSFSITLVTYYTYSFTKNRYLLFIGLGYFWIGFLDLFHIQTYPGMQIFMI 91

Query: 246 PSGELLIWRACSEIALSSSLII---FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            S    +        L + +++   F+      N   + +   T   I  +A +  +S Y
Sbjct: 92  DSPNNTLTFWVLTRTLGAVILLTAPFMRYRTFRNITVSSIFGATALIITYLATMHPLSLY 151

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
                 +  +I     ++      +Y   K  +        +  + +  +   ++     
Sbjct: 152 IQGQGLTDLKINFEYFIIAILAVTLYINKKHNQ--EFSKGIYSAVMLSIVFNILSELSFT 209

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
             + +   L     ++  L  + ++Q ++ T    +  F+  ++ +             D
Sbjct: 210 LYNDVYGFLNLVGHILKFLSFWVLLQAIIKTSL--KEPFTLMQKGASTYDAIPVAAAVVD 267

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQ 480
            +             L LA   + G   +     H  +    +  +   +  ++     +
Sbjct: 268 ELGMVRQINHAACEFLSLAEIDIIGKSNH--ELFHPKNSQKSQCSICQAIEQKKYIEHYE 325

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            E     +  ++  +   + P+S+S  +I   + I+ DITE+K     +   
Sbjct: 326 SE---DTSSGKY--IEFSLSPISSSEKNIQGVVQISIDITERKNLQINVQNQ 372


>gi|296392305|ref|ZP_06881780.1| hypothetical protein PaerPAb_29317 [Pseudomonas aeruginosa PAb1]
          Length = 951

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 267/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGAAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASGRPDSVEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +     +++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAVQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949



 Score =  117 bits (294), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 125/400 (31%), Gaps = 30/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDW++   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWNLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    +G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|296391862|ref|ZP_06881337.1| putative sensory box protein [Pseudomonas aeruginosa PAb1]
          Length = 899

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I MA N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|229033982|ref|ZP_04188934.1| Sensory box protein [Bacillus cereus AH1271]
 gi|228728335|gb|EEL79359.1| Sensory box protein [Bacillus cereus AH1271]
          Length = 450

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 6/449 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    VM +
Sbjct: 1   MFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQTNAN-DVAVMFL 59

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++KKIND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +    A
Sbjct: 60  DLDRFKKINDRLGHDVGDLLLIEVAKRLRSCLRSKDVVARQGGDEFTILLPDMYSEKSAA 119

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   +  P  + E E+++T SIG A +       +E++KNA++AMY AK  G N 
Sbjct: 120 FIAEQILTILNKPFFIKEEELSITPSIGIAMYPDYGTDVTELMKNADMAMYRAKANGKNR 179

Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F       +S+   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK 
Sbjct: 180 FVFFSKEMSIAQSEIQFLEGELAKALQQNEFFLEYQPQVNTTTKQIIGFEALIRWKHPKL 239

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++        
Sbjct: 240 GIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHAN 298

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S 
Sbjct: 299 LIPTISKVLEETELKPEALDIEITESIAINQNQSVISKLEQLQNLGIQISIDDFGTGYSS 358

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E   K L
Sbjct: 359 LAYLTKYPINTLKIAREFICGISNSPLEEAIISSIITLSKELHLEVIAEGVETEEQWKFL 418

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
               CD+IQ   ++ P+    + +LL ++
Sbjct: 419 HEQNCDHIQGFFISKPVSSKDVWRLLHKK 447


>gi|146337845|ref|YP_001202893.1| hypothetical protein BRADO0726 [Bradyrhizobium sp. ORS278]
 gi|146190651|emb|CAL74653.1| Conserved hypothetical protein; putative diguanylate cyclase
           (GGDEF)/phosphodiesterase (EAL) with PAS domains
           [Bradyrhizobium sp. ORS278]
          Length = 717

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/563 (24%), Positives = 246/563 (43%), Gaps = 20/563 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457
            +    E   L   G+   +        RV       A   G +  +        L    
Sbjct: 155 ELKQREESFRLLFDGNPVPMIVCARDDGRVLGVNEAAAQHYGYSRAAFEQLSIRNLQAYE 214

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                      +     +  R     R   AD     + I  R + +++      +    
Sbjct: 215 SE----TPWASEQSGEEQAARTWKHVR---ADGALIDLAIYSRHLVHNDQPA--VLLALM 265

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+K++   +   A  D LTG+P+R     ++   L       + +  V+V+ +D +K
Sbjct: 266 DITERKRAEARLAFLAQHDALTGLPSRNLLRQQIDDKLIQMRR-GSEKMAVLVLGLDNFK 324

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG A+GD +L  + +R+  +L+  DI+ARL+ + F ++          A     +
Sbjct: 325 SINDTLGHAIGDRLLRGVGKRLRSILRQEDIVARLNSDEFAVVQGGLARPEDAAQLCRRL 384

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
            +++A P  +    +T+ A+IG A   +    + ++LKNA++A+  AK         F  
Sbjct: 385 LQALADPYLIDGSSVTIGATIGIAMAPNDGDDAEKLLKNADMALSRAKTETRGTFSYFET 444

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            + +    R  I+ +L  A++   L   Y P+I L    I G EAL++W HP+ G I  S
Sbjct: 445 GMDARAQSRRKIEIELRDAIQRDLLQPHYQPLIDLSTGRITGFEALVRWPHPERGMIPPS 504

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAEE  +I  +   ML +   D   W D+     + + +N++        +   + 
Sbjct: 505 EFIPIAEETGLISGLGRSMLRQACSDAAKWPDE-----VRVAVNMSPLQFRVGNVLSLVM 559

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++    SR++L  +E++V+    +    L  LR +G+ +++DDFGT  S LSYL  
Sbjct: 560 DALKQSGLPASRLELEITETLVLEKSGQVLATLHALRALGVRISMDDFGTGYSSLSYLRS 619

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      R   AI+RSI+ + K +  TI A+ +  E +++ L   GC 
Sbjct: 620 FPFDKIKVDQSFIRDLAANREAQAIVRSIVSLGKGLGVTITAEGVETEAELRCLRAEGCH 679

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q    + P     I+ LL  +
Sbjct: 680 EAQGYLFSRPRPNAEIVGLLLAQ 702


>gi|152989344|ref|YP_001351073.1| hypothetical protein PSPA7_5754 [Pseudomonas aeruginosa PA7]
 gi|150964502|gb|ABR86527.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 899

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALTQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I MA N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|146309385|ref|YP_001189850.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145577586|gb|ABP87118.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 960

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/951 (15%), Positives = 322/951 (33%), Gaps = 39/951 (4%)

Query: 24  WMVSPSFAIEPINISSSDRVLDLTS----ITRIYVNQGEDFQVFTAADIDGISRRI--EV 77
                +   + + +         T      + +  + G            G   R     
Sbjct: 15  TCAVTARGGDALPLLQLSNEQLTTPVSIEHSLLLEDPGAQLTASEVLQRIGREGRPVQGT 74

Query: 78  SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFS 137
                     W    L      +L+  ++V    L     +            + S    
Sbjct: 75  PRIGYSRSAWWLAVQLQTPPAERLQ--LIVGQTFLDDLEIWLFADQQPLGPLYSGSLRPF 132

Query: 138 LDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKDTVNSFTLYRGII 195
            +R       +  +          ++ + + +     + L      +  +    L  G++
Sbjct: 133 NERGEPYPQFLISLPRLGEGPHNLLLRVQSHSAITLPLQLVGAQQGQQLIAHSWLQSGLL 192

Query: 196 IGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRA 255
           +G    LA+F  + Y   R   L      A  V  Y    +     L             
Sbjct: 193 VGALLALALFYLLKYSTLREPQLAYFSLTALCVALYNVSLYNLSGLLWPQWPLLPKWLVN 252

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
            +   +     +FL   L       +           +  L  ++  +     ++  + L
Sbjct: 253 LTTAGMLIFSSLFLASALRLELGRLRWLRDALFAAVLLVCLGGLAISHAYTYQTLNLLIL 312

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
            + +       +    +    A   +  W    +  + + ++    +       AL   L
Sbjct: 313 CTGLYQLLVMCLGVYQRR-PYAPGYLLCWSAALVLMLLVPLSRVGLIPLPPGFYALYAYL 371

Query: 376 VLIVILIGFTVIQHVLATGYF-----SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
             + +L+   ++   L                + E+       SG+ ++  D     +  
Sbjct: 372 PALSMLLFGALLDKQLERVRRVLLSSQAQAIDNLEQYQALFRHSGEGIFRCDRDGRLLEA 431

Query: 431 TPDIATILG--LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
            P +A +LG    +  + G     L        +     L   +  + G +  E ++   
Sbjct: 432 NPSLARLLGGDTPATQLVGLPLQRLLG------EAQWRELLQELDTQAGTVSCECQLHDL 485

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
             +  W+ + +      +       GI  D++E++   E +   A  D LTG+ NR+   
Sbjct: 486 AQRPLWVYLSLHLRPQRD----CIEGIVVDLSERRALEERLQQLAAHDALTGLLNRRELE 541

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             L+  L  +A        ++ + +D++K++ND+ G + GD +L  L  ++G  L     
Sbjct: 542 RLLSETLGGTAKRRFSH--LLHLSLDRFKQVNDLCGHSAGDQLLRQLATQLGHQLPRHAE 599

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LAR+ G+ F ++L   ++   +       R           R   +  SIG  +  S   
Sbjct: 600 LARVGGDEFAVLLREVDDEAALKQAEALRRAVEQFVFTWQGRPFRLHTSIGLLALGSGVR 659

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVY 724
                L  A  A   AKH+G N V  F            ++     L  A E     L +
Sbjct: 660 DWETALTWASSASQLAKHQGRNRVCQFNPEDGALLEHQRQLQWITRLREACERGHFELFF 719

Query: 725 HPIIRLMDEEI-VGLEALIQWDHP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            P+  L      +  E L+++  P     +S ++F+  A     + AI+ ++++ +   +
Sbjct: 720 QPVQALQSAASGLHYEVLLRYRDPASGEWVSPAQFLDAAARYDFLGAIDRWVIQHLCAWL 779

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +           + +N+++  LLD+   + ++  +S+    P ++ +  +E V +G   
Sbjct: 780 AANPRHLAQLA-QVNVNLSASSLLDSAFHQLLEQELSRHQLPPGKLCIEVTEMVALGELG 838

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            S   +  LR  G+ + LDDFG+  +  +YL ++P D +K +GS ++G        A++ 
Sbjct: 839 VSAQWIDELRSKGLKVALDDFGSGFASYAYLRHLPLDILKIDGSFISGIESDPINQAMVG 898

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           S+  +A  +    +A+ +  +  +  L R+G DY Q   V  P     +  
Sbjct: 899 SMRQIASQLGLLTVAEFVETQASLDCLRRLGIDYAQGYFVGRPQPLRQLAD 949


>gi|326408241|gb|ADZ65306.1| diguanylate cyclase GGDEF domain-containing protein [Brucella
           melitensis M28]
          Length = 672

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 81  VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 140

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 141 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 197

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 198 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 257

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 258 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 315

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 316 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 374

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 375 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 434

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 435 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 492

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 493 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 549

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 550 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 609

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 610 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 657


>gi|218894116|ref|YP_002442985.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
 gi|218774344|emb|CAW30161.1| putative sensory box protein [Pseudomonas aeruginosa LESB58]
          Length = 899

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I MA N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|319762933|ref|YP_004126870.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317117494|gb|ADU99982.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 1058

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 130/593 (21%), Positives = 248/593 (41%), Gaps = 32/593 (5%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATILGL 440
               V+Q +       Q +    +     +      V   ++VR R           I G 
Sbjct: 467  HLAVVQDIGERKQMEQALSDSEQHLLGILNHMPVGV---NLVRGRAIAFRNDRHVQICGY 523

Query: 441  ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQ-----YEFRVRAADNQFH 493
                    + +W   +  +  +R   R    +     R          E  + +      
Sbjct: 524  GEQE-APDVDSWWRLVMPDAAERHQAREAWKAACMAARHAADGAIRPVECHITSKAGLLR 582

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             + I    + +S+      I    D ++++++ E +   A+ D LTG+PNR+  LDRL  
Sbjct: 583  TVEISGVMLEDSH------IVTMVDQSQRRQAEEEVRYLAYNDPLTGLPNRRLLLDRLQQ 636

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             L +SA    L   V+++D+D +K IN+  G  +GD +L ++  R+   +   D LAR  
Sbjct: 637  ALAMSARHQ-LCGAVLMLDLDNFKHINETQGHDMGDRLLHAVALRLRACIPEDDTLARHG 695

Query: 614  GNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSK 667
            G+ F ++L          + +     + +  ++  P  L   E    T S+G   +    
Sbjct: 696  GDEFVVVLKDLGASPQEAATRAEAMGLQILDAMREPFALGGGEPRHTTLSVGIVIFQGLH 755

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
             ++ E+LK +++AMY AK  G + +  F             ++ D+   +E  E  L Y 
Sbjct: 756  ESADELLKRSDMAMYEAKAAGRDALRFFDPQVQAQMTARVALEADMRSGLEAGEFELFYQ 815

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P +      I G EAL++W HP  G I  SEF+ +AE+  +I  +  ++L      +  W
Sbjct: 816  PKMVH--GRITGAEALLRWKHPVKGYIPPSEFIPLAEQSGLILRMGQWVLRTACERLALW 873

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                 +  + + +N++ +   +      +   ++ T     R++L  +E +++ + E + 
Sbjct: 874  SSHPVLGQLSVAVNVSPRQFHEAGFVPEVLEALAGTGADARRLRLELTEGLLLQDVEDTV 933

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903
              + +LR  G+  +LDDFGT  S L+YL  +P   +K + S +    +     AI R+I+
Sbjct: 934  AKMVQLRGYGVGFSLDDFGTGYSSLAYLKRLPLHELKIDQSFVRDVLTDPNDAAIARTIV 993

Query: 904  PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  ++   ++A+ +  E     L R GC   Q   ++ PL   +   L+ E 
Sbjct: 994  ALGTSLGLQVVAEGVETEAQRVFLERSGCHAWQGYLLSRPLPGLAFEDLVLEH 1046



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 7/156 (4%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQG---IFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTT 431
            L+  ++   V++ V A G   Q    +    ER       +   +   D+  DR V   
Sbjct: 330 ALLTAMVSMLVLRRVRALGDVQQAGVALRESEERFRAVFSQAAVGMAQVDLHSDRMVRVN 389

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +  +LG     +      +       D D     ++     +    + E R    D +
Sbjct: 390 RKLCDLLGYTEAEL--QQLRFQDISDPRDLDADLAFMERMRSGKISEFRMEKRYCRKDGE 447

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             W  + +  +    G    ++ +  DI E+K+  +
Sbjct: 448 IVWAELMVSRLCLE-GRPESHLAVVQDIGERKQMEQ 482


>gi|170750801|ref|YP_001757061.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657323|gb|ACB26378.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 574

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/550 (24%), Positives = 254/550 (46%), Gaps = 26/550 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHIND----RDNFR 465
           +  +   +   D     V  +     +L  L      G     L     +     R    
Sbjct: 34  LDAARQGLLMIDRAGTVVAASAPARRLLESLTVAPRIGAAALPLLRALRDGSAPARHATL 93

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   +  R+  L +E R RA     H + + + P+  + G    ++    D++ +K +
Sbjct: 94  RALRGALARRQPAL-FEVRRRA-----HTVQVELHPL--AEG---GWVVTLEDVSTRKAT 142

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR    +RL   L+  A        +++ID+D++K +ND LG 
Sbjct: 143 EARADAMARLDPLTGLPNRLLLRERLAAALERLAR-PGEGFALLLIDLDRFKPVNDTLGH 201

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L ++  R+   ++  D +AR+ G+ F I+     ++      A  +   I    
Sbjct: 202 PIGDALLATVADRLRSTVQATDTVARIGGDEFVILQAGIRDAAGTQALARRVVDLIGRTY 261

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +    +T+ AS+G A   +    +  +LKNA+LA+Y AK  G      F        + 
Sbjct: 262 MVEGHLLTIGASVGVALAPADGTDADRLLKNADLALYRAKLDGRGTYRFFEPEMDARMQA 321

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++ D+  A+   E  L Y P ++L    ++G EALI+W HP  G +S  +F+ +AEE
Sbjct: 322 RRKLELDMRQALARREFQLHYQPQMQLASGTLIGCEALIRWRHPDRGLVSPLDFIPLAEE 381

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I  I  +++ +  RD ++W D     P+ + +N++      + L E + + ++ +  
Sbjct: 382 IGLIVPIGEWVVRQACRDAVTWPD-----PMSVAVNVSPAQFKSDRLVETIISALAGSGL 436

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R+++  +E V++   +R+   L RLR++G+ +++DDFGT  S LSYL   PFD +K 
Sbjct: 437 PARRLEVEITEGVLLQENDRTLQTLHRLRELGVRVSMDDFGTGYSSLSYLRSFPFDKIKI 496

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +   T      AI+R+I  + +++  T +A+ +     ++ +   GC  +Q   ++
Sbjct: 497 DRSFVKDLTSKPDGEAIIRAIAGLGRSLGMTTVAEGVETSEQMQRIRFEGCTDVQGYLIS 556

Query: 942 SPLGFNSILK 951
            P+    + +
Sbjct: 557 KPVPAEDLRQ 566


>gi|75763729|ref|ZP_00743402.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488784|gb|EAO52327.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 912

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 161/760 (21%), Positives = 303/760 (39%), Gaps = 30/760 (3%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           I ++      L   F +  ++L  + +   F   + N  S           +    ++  
Sbjct: 165 ILFLSIGDVFLSFIFPIIDLLLLLLGVTLIFRPAIFNAKSK----LYIFILVLTGLAITD 220

Query: 268 FLFMYLH--WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI-------TLASI 318
           +L+ YL    +          +        +            +   I        L   
Sbjct: 221 YLYFYLQGDLSERSVIFLRCLYRVFLLFIAIAATIPKDASSKRNYFIINPTFGEKLLGIF 280

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  +I   +K    +  LI    + F++ +     +  +  +      L   L + 
Sbjct: 281 PYLAVAVLIGFTLKEQTSSATLITGNCIAFVFVLIRHTIVRMQNKD------LTETLKVF 334

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +  TV Q        S  +  + ER         D +   D     +      + +L
Sbjct: 335 NNQLEQTVSQRTRDLINKSNDLVKNQERFKSLYEYHPDPILTIDSTGIVLNINQAGSMLL 394

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  S  + G            D+      +          LQ   +     +   W  + 
Sbjct: 395 GKDSAVLIGKEC--FSIFLDEDKSELEAAIKKGRRCSSSSLQLRVKNNNEKDMLFWY-VT 451

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+    G       +  DIT  K+  + I   AF D +T I NR  F   L   +   
Sbjct: 452 IVPIM-IEGQTFGSYVMVKDITRMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRSIKRV 510

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G+ F 
Sbjct: 511 QKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGGDEFA 569

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II+ ++    ++ +    +      P  + +    ++ SIG A +    I ++ +L++A+
Sbjct: 570 IIVHNQT-EQQLLNLCKTLFLITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHAD 628

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I   + +++
Sbjct: 629 IAMYSAKEKGNNAVCMYDEKLSQKVTRRLRLEQDLPNAIENNELFLLYQPQIDSKEGKVI 688

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++  R +  W        + +
Sbjct: 689 GAEALIRWQHPELGLISPFEFIPIAEETAQIISIGKWTLQKACRQLKEWHSA-GFSNLKM 747

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ +    +  + +   I +     + I L  +E + M + + +   L  L+  G+
Sbjct: 748 GINLSAIEFEQKDFVQTIIYTIEEIGVPANSINLELTERIAMVDEKETLSKLKALKSFGV 807

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  +   +I
Sbjct: 808 HLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGGEIIQTIISLAHTLNMKVI 867

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +  +  L R  C  IQ  + + P+  +  +  L 
Sbjct: 868 AEGVETKEQLTVLQRNACYLIQGYYYSKPVNDDEFIVFLS 907


>gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 611

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 132/442 (29%), Positives = 232/442 (52%), Gaps = 5/442 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I E+K   E +L  A  D LTG+PNR  F++RL   L+ S      +  V+ +D D++
Sbjct: 164 REIGERKLLEEQLLKMALHDALTGLPNRVLFMERLVQALNCSKEVKGYQFAVLFLDCDRF 223

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD++L++L RR+ + L   + LARL G+ F ++++   N       A  
Sbjct: 224 KVINDSLGHPVGDELLIALARRLEKSLHPKNTLARLGGDEFAVLIVDIENITTATQSAER 283

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + +A+P  L   E+ + ASIG A    +      +L++A+ AMY AK+ G    + F 
Sbjct: 284 ILQRLALPFQLKRYEVFINASIGIAVGNFNYEQPEHLLRDADTAMYRAKNLGKGQYQIFD 343

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +        + ++ DL  AV   E  + Y PI+ L    I G EAL++W HP+ G +S 
Sbjct: 344 PAMHDAALKVLQLENDLRRAVNQQEFIVYYQPIVALNTGRIFGFEALVRWQHPQKGLVSP 403

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEG 813
           + F+  AEE  +I +I  ++L    R +  W R++    P+ + +N++ +     +L E 
Sbjct: 404 ALFIPAAEETGLINSIGKWVLGEACRQLRLWDREKVADYPLTMSVNLSVRQFAQPDLIEQ 463

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++++T  +P  +KL  +ES +M N + + ++L +LR+  I L++DDFGT  S LSYL
Sbjct: 464 IDQILTQTQLNPKFLKLEITESAIMENAKSAAVILQKLRERHIQLSIDDFGTGYSSLSYL 523

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K + S +     K   +  + +I+ +++ +    IA+ I  +  + +L  + 
Sbjct: 524 HSFPVDNLKIDRSFVQRLDGKAENMGLISAIMSISQALGMNAIAEGIETQEQLAQLRSLN 583

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C + Q    + PL   +   L+
Sbjct: 584 CPFGQGYLFSKPLEATAATNLI 605


>gi|86747317|ref|YP_483813.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570345|gb|ABD04902.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Rhodopseudomonas palustris HaA2]
          Length = 743

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/564 (24%), Positives = 256/564 (45%), Gaps = 23/564 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S+ +     R   A+      +  +D  R  V +    A I  L    +   +   
Sbjct: 181 LRSMSRTLELSNLRLDAALNNFLHGLCMFDGDRKVVVSNARFAGIYSLRPDEIRCGVS-- 238

Query: 453 LPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           L  I    R+   F          R      E      D     +++R +P++       
Sbjct: 239 LSAIQSACRERGTFVESWSERRLGRCSDDISEVSSL-QDG--RTILVRCQPVAGG----- 290

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ +  DITE+ +S + I   A  D LTG+ NR +F +R+               +V++
Sbjct: 291 GWMTVHEDITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGET-FSVIM 349

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LK 629
           +D+D++K +ND LG   GD +L ++  R+   ++  D+LARL G+ F ++     +S  +
Sbjct: 350 LDLDRFKLVNDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYNE 409

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              FA  +   +  PI +   ++ ++ S G A        S E++KNA+LA+Y AK  G 
Sbjct: 410 AVAFADRIVNCLIDPIEIDGHQLVISTSAGIALAPQHGTDSDELIKNADLALYRAKAAGR 469

Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N   +F   +    + R  ++ +L  A+ N E  L Y P +      ++G EAL++W HP
Sbjct: 470 NGYVTFETAMKDRANARQQLEGELRQAILNREFDLYYQPQVEARSGRVIGAEALLRWRHP 529

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  SEF+ +AEE  +I+ +  ++L+  A + I W       PI + IN++   L  
Sbjct: 530 RRGFVPPSEFIPVAEETGLIEKLGEWVLKEAAAEAIRWPA-----PIKLAINLSPVQLSR 584

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L + +   +  +   P R+++  +E+V + +   +  ++ +LR +G+S+ LDDFGT  
Sbjct: 585 GNLTDTVTQALRLSGLPPERLEVEITENVFLEDEVNNLAVIRQLRSLGVSVALDDFGTGY 644

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL   PFD +K +               I+ S+I +A+ +  + +A+ +      +
Sbjct: 645 SSLSYLTRFPFDQIKIDKFFSMNLIERSDCATIVSSVITLARGLGISTVAEGVETVRQFE 704

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   G DY Q      P+  +++
Sbjct: 705 LLREAGVDYFQGYLFGHPVPASAL 728


>gi|307822843|ref|ZP_07653074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307736447|gb|EFO07293.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 719

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/554 (24%), Positives = 264/554 (47%), Gaps = 20/554 (3%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL----P 454
               + S+A       G+ ++  D  +  ++      TI G     ++G   ++L     
Sbjct: 162 QSEGKLSMASVIFNNIGEGIFVTDKDKKIISVNEAFTTITGFTQQEVYGKNAHFLHSKKN 221

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I I+D       L + +       Q E   R  +         +  + +S+G++  Y+ 
Sbjct: 222 SIKIDD------ELSN-LTGTVNSWQGEVWRRHKNTMDFPSWTTVSEVKDSSGEVAHYVH 274

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DIT  KK+ + +   A+ D LT +PNR    DR+   L  +   +  +  V+ +D+D
Sbjct: 275 VFMDITHFKKAQDHLGFLAYHDPLTRLPNRLLLKDRIDHSLQNALR-EGSQAAVLFLDLD 333

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND  G AVGD +L  + +RI  L++  D ++R +G+ F + + +  ++   A  A
Sbjct: 334 RFKGINDTYGHAVGDGLLREVAKRIKNLVRKEDTVSRYAGDEFVVFMENIPDAKNPAKLA 393

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++   P+ +    + ++ S+G + +      +  ++KNA+ AMY AK  G N+ + 
Sbjct: 394 QKLIETFNAPVYIKGYRLKISTSVGISLFPQDGRDTDTLIKNADAAMYRAKKEGRNNFQY 453

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           + +   +   +++ ++  L  ++E  EL L Y P + L   ++VG+E+L++W HP+ G +
Sbjct: 454 YSLELTTEAFEKMSMEYALRQSIERHELILYYQPQVCLKTGKLVGVESLVRWMHPELGLM 513

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ IAEE   I A+  ++L+     +  W D+       + +N+++   L ++   
Sbjct: 514 SPKQFIYIAEESGFIVALGEWVLQNACMQMRRWLDEGLQVNKMV-VNVSAIQFLRSDFIA 572

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ ++  T   PS ++L  + +  M N E++   L +L  +GI LT+DDFG  C   + 
Sbjct: 573 TVERILRSTGLEPSSLELELTGNGFMDNSEQTIKALNQLVALGIDLTIDDFGVGCFSFNN 632

Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  IP   +K N S +    +      I R++I +   +   +IA  I      + L  +
Sbjct: 633 LKRIPVKKLKINSSFVVDVLNNANDEDIARAVIALGHGLHLRVIAMGIESTAQQRRLMDL 692

Query: 931 GCDYIQDSHVASPL 944
           GCD  Q    +SP+
Sbjct: 693 GCDEGQGHLYSSPV 706


>gi|270158764|ref|ZP_06187421.1| putative response regulator, PAS/GGDEF/EAL domain-containing
           protein [Legionella longbeachae D-4968]
 gi|289166434|ref|YP_003456572.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
 gi|269990789|gb|EEZ97043.1| putative response regulator, PAS/GGDEF/EAL domain-containing
           protein [Legionella longbeachae D-4968]
 gi|288859607|emb|CBJ13577.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
          Length = 752

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 135/557 (24%), Positives = 265/557 (47%), Gaps = 17/557 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN---DRDNF 464
              +  S + +   +     V    +   +  L+   + G   + +     +   D + F
Sbjct: 201 RATLESSINGIVVVNNENKVVDWNQNFIDMWSLSHELIDGKDYDKIQIYIQDKLLDANKF 260

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +               ++   D +F     +++ M   N  I+  +    DI+E+  
Sbjct: 261 HEQIQKIQLNPETTEITTLQL--KDGRFFECYSQLQKM---NKKIVGRVWSFQDISERIS 315

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   A  D LT +PNR    DR+   +  +    N    V+ ID+D++K IND   
Sbjct: 316 LTAKLEFQATHDALTELPNRILLFDRIHHAITHAQR-INSLFAVIFIDLDRFKLINDSFS 374

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIA 642
            A GD +L  ++ R+ ++++  D +ARLSG+ F  IL+SE+      I      +  +I 
Sbjct: 375 HAAGDSLLKEISSRLKKIMREEDTIARLSGDEFIFILLSESLKKPEDIMAICDKILAAIT 434

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             I + +REI +TAS+G + +        E+++NA+LAMY+AK  GGN  + +     + 
Sbjct: 435 KAITISKREILITASMGISIYPQDGSNVDELIRNADLAMYNAKALGGNQYQFYSAKLNQQ 494

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +  +  L  A+ ++ELYL Y P   +  E+++ +EALI+W HPK G +   +F+ +
Sbjct: 495 SLERLDKESALRKALLSNELYLEYQPQYDVKTEQLIAVEALIRWKHPKKGILLPMDFIPL 554

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  I  ++L        +W+D+   PP  + +N+A+K  +  +  + ++ ++++
Sbjct: 555 AEETGLIVPIGEWVLRTACIQNKAWQDK-GFPPFSVAVNVATKQFMQPDFVQMVKRVLNE 613

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P  +++  +E++++ N       +  L+ +GI + LDDFGT  S LSYL  +P D 
Sbjct: 614 SGLLPEYLEIEVTENILIRNI-AVTESIKELKNLGIRIVLDDFGTGNSCLSYLRALPIDQ 672

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    E      ++++II +A ++   ++A+ +   + +  L    CD +Q  
Sbjct: 673 LKIDQSFIHDIEENNSDALVVKAIISLANSLSFDVVAEGVENLLQVDFLKNQHCDKLQGY 732

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+    +  L+K 
Sbjct: 733 YFSQPVSAEELESLIKN 749


>gi|258406560|ref|YP_003199302.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
 gi|257798787|gb|ACV69724.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
          Length = 650

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 162/639 (25%), Positives = 306/639 (47%), Gaps = 18/639 (2%)

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           + ++ A++++   ++  +W +     + +   +   +  L   L  +  + G  ++ +VL
Sbjct: 8   RFFQPAMIVLIYVLVAGVWIVFSDSIVAQLAPSSHWRTTLQS-LKGLFFVAGTGILLYVL 66

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHGPI 449
               +++ +        L    +    WDWDI  DR T   D+++ L  G  +  +    
Sbjct: 67  -IRGYAESLRQKERHNRLTQRAAKACSWDWDIEADRFTWAGDVSSFLTEGDGTSPLPRTY 125

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGD 508
           ++ L +IH  D  NF   +   +  R   L  EFR +   N   W         + +   
Sbjct: 126 QDVLRHIHPEDIPNFERAVQESLL-RDQELHLEFRWQRGANT-RWFFAVGEVERDLTTNK 183

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
                GI  DIT++K++ + +   +  D LTG+ NR  FL RL  +        +    V
Sbjct: 184 PQHLRGIIRDITQRKQAEQELAYKSEWDGLTGLLNRSFFLKRLEQLFQTQRRLGHCSFAV 243

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++DID++ +IND LG  VGD VL   +RR+   L   D LARLS + FGI+L + N+  
Sbjct: 244 LLLDIDRFSRINDSLGHWVGDAVLQEASRRLANFLSPADSLARLSADEFGILLQASNDQD 303

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKH 686
           ++   A  + + +  P++L   +I +TASIG  +   +        +L++A  AM  AK 
Sbjct: 304 QVLRSAHHILEVLKTPMHLSPHDINITASIGVVTCFDANPYNNPEYILRDAATAMRQAKL 363

Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLC---LAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           +GG+ + +F+    +   + + ++  L          EL+L + PI+ L   EI G EAL
Sbjct: 364 QGGDQIAAFKKALHTQAFEALSLENQLRKNLRDPAQQELFLAFQPIVDLGSGEIAGFEAL 423

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFILIN 799
           I+W       I  + F+ +AE+  +I+ +  ++L+     + + R         + + +N
Sbjct: 424 IRWRLADGTVIPPNRFIPVAEQSGLIQPLGKWVLDSACAALAALRANDPNAVDHMHVNVN 483

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++ L  ++    +  L+         ++L  +E+V+M N  + +  LG+L++IGI + 
Sbjct: 484 VSARQLEQHDFVREINELLLIHNLPAQTLRLELTETVLMENAAQVQNFLGQLQEIGIGVA 543

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL     +T+K + S +    + E   AI ++II MA+++  T++A+ 
Sbjct: 544 VDDFGTGYSSLSYLHRFSINTLKIDLSFVQSVLTNEHSKAITQAIIDMAQSLNKTVVAEG 603

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I  +     +  MGC Y Q    + PL   ++ +LL ++
Sbjct: 604 IETQEQAALIAAMGCRYAQGFLFSYPLEKEALPQLLDQQ 642


>gi|253701124|ref|YP_003022313.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M21]
 gi|251775974|gb|ACT18555.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter sp. M21]
          Length = 869

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 231/445 (51%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+ + + I   A  D +T +PNR S + RL   L+L+    + R  V+ ID+D++K IN
Sbjct: 424 EQELNEQRIEYLAHYDTVTKLPNRFSLMARLGQALELAKR-FSSRLAVIFIDLDRFKNIN 482

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  +  R+ + ++  DI+ARL G+ F ++L   N+++  A     ++++
Sbjct: 483 DSLGHHIGDRLLFQVAGRLQDTIRSADIVARLGGDEFVVVLPLINSNISAAHAVRKIQQT 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++    +   E+ +T SIG + + +   T  E++KNA+LAMYHAK  G N  + F     
Sbjct: 543 LSQGYTVESHELNITPSIGISVYPTDGETVQELMKNADLAMYHAKSAGRNSYQFFTQEMN 602

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + +  +  + DL  A+E  E+ L Y P I L   E+VG+EAL++W HP  G ++   F+
Sbjct: 603 LTVQARLVLESDLRTALERDEMMLHYQPQIDLKSGEVVGVEALLRWRHPVRGAVAPDVFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I +I  F L+     +  W  Q    P+ + +N++++    + L   +  ++
Sbjct: 663 PVAEDTGLILSIGEFALKSACEQLALWISQGL-SPLRMAVNLSARQFKQSNLPSLLADIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + T  +   ++L  +ES  M +P  + + L  LR++G+ L +DDFGT  S LSYL   P 
Sbjct: 722 AATGVAAHLLELEITESSAMDDPNTAIVHLRTLREMGVELAIDDFGTGYSSLSYLKLFPV 781

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S + G         I  + I +A N+   ++A+ +  E   + L    CD +Q
Sbjct: 782 NRLKIDRSFVRGIDTDSEDAEIAAATIALAHNLGKEVVAEGVETEAQCRFLRGQQCDILQ 841

Query: 937 DSHVASPLGFNSILKLL-KERFPLV 960
               + PL    I   L   R P  
Sbjct: 842 GYFFSEPLSAAGIASYLAANRRPPA 866


>gi|163849591|ref|YP_001637634.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163661196|gb|ABY28563.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 1428

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 150/577 (25%), Positives = 261/577 (45%), Gaps = 20/577 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               ++ +      +  + +  ER  LA+     + W+ D+     T + +   +LG+ S 
Sbjct: 852  VGALRDISEQRRANAALRASEERLRLALQAGRMVAWERDLKTGLATRSDNALQLLGIGS- 910

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               GPI   L  +H  DR +     + F  Y       EFR         W+ +R   + 
Sbjct: 911  ---GPISLLLDNVHPEDRAHV----ERFTAYGGALSTVEFRYLHPAGPQIWLTMRAERV- 962

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                +  R +GI  DITE+K S E     A  D LTG+PNR+ F  RL   L  +     
Sbjct: 963  ----EAGRIVGITFDITERKLSEEQAWRAANHDALTGLPNRRLFHQRLEQALAAAER-GG 1017

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               T++++D+D  + +ND+ G   GD VL  ++ R+ E L+  D +ARL G+ F ++L  
Sbjct: 1018 TSVTLLLVDLDTLRDVNDIHGHDAGDAVLREVSSRLVEGLRASDTVARLGGDEFALLLTE 1077

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                   A  A  + + +  P+      +T TASIG A++        ++LK+A++A+Y 
Sbjct: 1078 PLRLEHAAKHAEVLLERLRQPLVYRGHRLTCTASIGLAAYPDHHRNPYDLLKDADIALYR 1137

Query: 684  AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK +G N    F             I  ++  AV   ++   Y P I      IVG EAL
Sbjct: 1138 AKAQGRNSAVVFAAEMRSQTERRVLIAAEVRTAVAAGQIVPYYQPKICFTTGAIVGFEAL 1197

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
             +W HP+ G ++   F    E   +  AI   ++ ++A D+  W      P   + +N +
Sbjct: 1198 ARWQHPEKGLLTPGYFGSAFENPELATAIGSSLIRQVAADLGQWCRCGLDPG-RVAVNFS 1256

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTL 860
            S +    +L   + +++S+    P+R ++  +E+V +G+  E     L RL   GI +TL
Sbjct: 1257 SAEFRRPDLAGDILSVLSEHDVPPARFEVEVTETVFLGHGTEVVPATLRRLHDNGILITL 1316

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFGT  + L++L   P   +K + S +      +   AI+ ++I + +++   + A+ +
Sbjct: 1317 DDFGTGFASLTHLKQFPVGHIKVDQSFVRNVVQDQGDAAIITAVIGLGRSLGMQVTAEGV 1376

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               +    L+ MGCDY Q      P+  + +   L+ 
Sbjct: 1377 ETVVQANRLSAMGCDYAQGYLYGKPMAGSRVPWFLRN 1413



 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 10/364 (2%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G         A +++        + +  R+              L  I++        L 
Sbjct: 104 GEPHIRFYAGAPLVLGAGIHLGSLCLIDRVPRSFSAEQQEQLRDLAQIVVAQ------LR 157

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                +      +   L    S D++   D+   R   +P ++ +LG  +  + G   + 
Sbjct: 158 LSKAERKARESADDYRLLADNSSDLIIRSDLDGTRRYVSPAVSRLLGYEARELLGT--HP 215

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILR 511
           L  +H ++  ++  +L      +      + R R  D+ F W+ I          G    
Sbjct: 216 LASVHPDEASSYAQLLKQLEAGQISEAVTQQRYRRRDSSFVWVEISFSLTREEETGGPNG 275

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ I  DI+++K     +   A  D LTG+PNR  F ++L   +  +    +    ++ +
Sbjct: 276 YVAIIRDISQRKAVESEMARIARHDPLTGLPNRLHFREQLEQEIARTKRTSST-FALLCL 334

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG   GD +L  + +RI  +L+  D LARL G+ F II  +   +   +
Sbjct: 335 DLDRFKLVNDTLGHQAGDRLLKVVAQRIKSVLRTEDTLARLGGDEFVIIQTNCARAEDAS 394

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  ++  P++L      V  SIG A      +    +   A+ A+Y AK  G N 
Sbjct: 395 RLAERVIAAMLPPVDLGGYPAGVGVSIGIALAPQDSLDHDHLYALADQALYRAKAAGRNT 454

Query: 692 VESF 695
              F
Sbjct: 455 FRLF 458



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 15/169 (8%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            +   S+ I    ER  LA+L + D +WDWD+  D    +     + G            
Sbjct: 731 ESRQASEAIRLQEERYRLAMLATQDAIWDWDLGADTAEWSDGAYRLFGYDDAERADTGAW 790

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   IH +DR+   T +   +  +  R   E+R   AD  +  +      + ++ G  LR
Sbjct: 791 WKSKIHPDDRERVTTSIKHIIESQEHRWSDEYRFARADGSYAEVTDCGFVIRDTEGQALR 850

Query: 512 YIGIANDITEQKKSL------EGILCNAF---------QDNLTGIPNRQ 545
            +G   DI+EQ+++       E  L  A          +D  TG+  R 
Sbjct: 851 MVGALRDISEQRRANAALRASEERLRLALQAGRMVAWERDLKTGLATRS 899



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 14/191 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                R     +  + V  L     LI   + + V       + + +   R    +  S 
Sbjct: 571 HTAKGRPRWWDVALSPVKTLSGARGLI-LAISRDVTVQVELERDLQTTANRYKALIEASA 629

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            +VW        V  +    T  G    +  G    WL  +H +DR    T        +
Sbjct: 630 TMVWRATPDGSLVE-SSGWGTYTGQPESAYIG--YGWLDTVHPDDRQRVTTTWREIFASQ 686

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-------- 527
                +EFR    D  + W + R  P+ +++G +  ++G   DI E +++ E        
Sbjct: 687 AAG-SFEFRALCRDGAYRWTLTRAVPLKDASGQVQEWVGTDGDIHESRQASEAIRLQEER 745

Query: 528 -GILCNAFQDN 537
             +   A QD 
Sbjct: 746 YRLAMLATQDA 756



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFR 465
               +  S D +   D   + +  +     ++ +   G   G   +W+       +   +
Sbjct: 495 LRDILESSSDCMKLLDQEGNLLFLSAGGLKVMEIDDVGPFLGQ--SWVELWQGEHQVAAK 552

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +      +  R +       A  +  W  + + P+   +G     + I+ D+T Q + 
Sbjct: 553 DAVSQASRGQEARFRGFC--HTAKGRPRWWDVALSPVKTLSGARGLILAISRDVTVQVEL 610

Query: 526 LEGILCNAFQ 535
              +   A +
Sbjct: 611 ERDLQTTANR 620


>gi|192291678|ref|YP_001992283.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285427|gb|ACF01808.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 883

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/608 (23%), Positives = 272/608 (44%), Gaps = 25/608 (4%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           + +  ++   L +   +   V   V     +   V+   L      Q       R S+AV
Sbjct: 276 VVVSRSVNGVLSSW-WRELWVMVAVACASALAVAVVLFQLGRQIIRQETDLRK-RYSIAV 333

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW--LPYIHINDRDNFRTILD 469
                 +  +D     +        + GL +G++   +R +  +  +     D       
Sbjct: 334 DNMAQGLSLFDSTGRLLLFNQRYLDLYGLPAGALKPGMRTFEIVRQLQQAGHDPHLLESY 393

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                +    +  F V   D     ++I   P+         ++    +ITE+K+S   I
Sbjct: 394 RAFALKNAGARSAFEVEFPDG--RTILITREPIPGG-----GWVTTDEEITERKRSDSRI 446

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LTG+PNR SF   L   L+L   +   +  ++ IDID++K +ND LG  VGD
Sbjct: 447 HHLAHYDDLTGLPNRSSFRKHLGEALNLI--EPGDQLALLYIDIDEFKIVNDTLGHPVGD 504

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L +L  R+   +   D +ARL G+ F +++    ++  I +F   ++ ++   I+   
Sbjct: 505 QLLQALADRLRNCVGPDDYVARLGGDEFAVVM---ADASDIREFVAKLQATLRDSIDCAG 561

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
           + ++  ASIG A          +++  A+LA+Y AK  G      F          R  +
Sbjct: 562 QVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEGRRTYRFFMPEMDVKAKARHEL 621

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  AV   +  L + P++ L    I G EAL++W HP  G +S +EF+ +AE++ +I
Sbjct: 622 ATELKRAVTEHDFRLHFQPLVDLNSGTIAGCEALLRWQHPVRGFVSPAEFIPLAEDIGLI 681

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + +  + L++  R  + W        + + +N++            + A +++T  +  R
Sbjct: 682 EDLGEWALDQACRVAVGWPAS-----MTVAVNVSPIQFRRATFPLKVAAALARTGLAAHR 736

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E++++ + E +  +L +LR +G+ + LDDFGT  S LSYL   P D +K + S 
Sbjct: 737 LELEITEALLLQDNESTLAILNQLRDLGVKIALDDFGTGYSSLSYLHRFPIDKIKIDKSF 796

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   TE+     I+R+I+ +A     T +A+ +        L R+GC  +Q    +  L 
Sbjct: 797 VDTLTEEAGSATIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRRLGCQQMQGYLFSPALP 856

Query: 946 FNSILKLL 953
            +++ +L+
Sbjct: 857 EDALARLI 864


>gi|89091871|ref|ZP_01164826.1| hypothetical protein MED92_06886 [Oceanospirillum sp. MED92]
 gi|89083606|gb|EAR62823.1| hypothetical protein MED92_06886 [Oceanospirillum sp. MED92]
          Length = 992

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 133/599 (22%), Positives = 242/599 (40%), Gaps = 20/599 (3%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +  R    I        ++           + +     + + + +  +R         +
Sbjct: 402 TVITRDGTAIPVTVNGKAVLWNGQKARAASFRDITRRIEYQKRLMASEDRFRQLSDLVAE 461

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +  +      +     +  + G     +     + L              L +   +  
Sbjct: 462 GLLIYS-ENKIIDVNQSLCELFGQRREDLLESDLSELFS---------EQSLTAINNHPD 511

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                E  +  AD       I    M   +G  L  +    DI+  K+  E IL  A  D
Sbjct: 512 TAAALELSLERADGTLFPAEITTASMQFDDG--LFIVLSIRDISRYKEQEEHILYQAQFD 569

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LT IPNR    DR    +  +   D  +  +M ID+D +KK+ND +G  VGD +L   T
Sbjct: 570 LLTHIPNRFLAKDRAEQAIRNADKHDG-KLALMFIDLDGFKKVNDSMGHEVGDQLLQQAT 628

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR    ++    LAR  G+ F II     +       A  + +  + P ++  +++ VTA
Sbjct: 629 RRFVSCIEKQHTLARHGGDEFIIIQEDIADPTDSEIVAEKILQQFSNPFSIENKQLIVTA 688

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLA 714
           SIG + +       S++L+ A++ MY AKH G N    +           +  D  L  A
Sbjct: 689 SIGISIYPDDANNYSDLLRAADIGMYKAKHDGRNRFHYYTQEMNDIATRKLALDNSLREA 748

Query: 715 VENSELYLVYHPIIRLMDEE--IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++N E  LV+ P+I  +  +  + G EALI+W  P  G +S  EF+   E+  +I  I  
Sbjct: 749 LQNREFNLVFQPLICNVKGQPKVQGAEALIRWTSPVLGQVSPVEFIPHTEQSGLIIPIGR 808

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE+  +    W D      +FI +N++ +    N+L   + + +  +   P  + +  
Sbjct: 809 WVLEQACQQAKRWVDD-GQEDVFISVNVSPRQFKGNDLLRDLTSALESSGLHPHHLNIEV 867

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E +++         L  +  +GI+L++DDFGT  S L+YL   PF+ +K + S +    
Sbjct: 868 TEGLLIEASPELNNTLQLITDMGINLSMDDFGTGYSSLNYLKKFPFNNLKIDRSFIKELP 927

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  ++ + I MA  +  ++ A+ I        L  + CD +Q  ++  P+  N  
Sbjct: 928 DNSDSAILVTATIAMAHQLGLSVTAEGIETAEQYNYLRGLRCDRLQGFYMGKPVPANEF 986



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/162 (10%), Positives = 46/162 (28%), Gaps = 18/162 (11%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V  +   +++ + +     + +     R       S + ++  +     V        +
Sbjct: 304 AVKQLYSRLVETLRSNAQQQKDLERSEHRLQNFDKVSSEAIFIHNSEG-IVDVNKQAEKM 362

Query: 438 LGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            G     +          +  +D    ++    ++          Q    V   D     
Sbjct: 363 FGYTHTELLQ--------LKPDDFFSAESLPVAMEKVRTQSETPYQAT--VITRDGTAIP 412

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           + +  + +   NG   R      DIT + +  + +   A +D
Sbjct: 413 VTVNGKAVLW-NGQKARA-ASFRDITRRIEYQKRL--MASED 450


>gi|237746601|ref|ZP_04577081.1| GGEF/EAL/PAS/PAC-domain-containing protein [Oxalobacter formigenes
           HOxBLS]
 gi|229377952|gb|EEO28043.1| GGEF/EAL/PAS/PAC-domain-containing protein [Oxalobacter formigenes
           HOxBLS]
          Length = 588

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 131/554 (23%), Positives = 256/554 (46%), Gaps = 13/554 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +      +             P  A +LG +  S      +    I+ +   + +  
Sbjct: 31  RALLEKLPVGLMQIGEDERIRFVNPHFAGMLGYSPESF---PSSIKDLINPDTYFHSQHT 87

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSL 526
                   R R Q E R R     +      IR + + NG     I ++     + K   
Sbjct: 88  WKDMWHTMR-RFQVEIRFRHKKGYYILTENIIRLILDENGLPDYAILVSRPADPDGKPVP 146

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     +  D LT +P R      L   L+ +         V+ ++I+++K IN+ LG  
Sbjct: 147 DR--HLSLFDPLTSLPTRNYLDSFLDGALERT-RQGGKMLAVLELNINRFKIINESLGHD 203

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L  +++R+   +   D + RL G+ F ++L        +   A  + K++  P+ 
Sbjct: 204 AGDALLKLVSKRLIHAVHENDTVVRLGGDEFVVVLEKIRKPADVVSIAARLMKTVTEPLQ 263

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           L   ++++  SIG + +      +  +LK+A++A+  A+ +  + V  F      + +  
Sbjct: 264 LSGHDLSIAVSIGGSLYPRDASDAGTLLKHADIALAEARRKRSSVVRFFNPDMNVTPKER 323

Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +  + +L  A++ +E  L Y P + L   EI  LEALI+W+HP  G I+++ F+ +AEE+
Sbjct: 324 LITESELRRALDRNEFTLFYQPRLCLKTGEIASLEALIRWNHPGEGIITAARFIPLAEEI 383

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I+ I   +LE IA  ++ W+ +     + +  N+++++L  + L   ++  I++T  S
Sbjct: 384 GLIEKIGEHVLEAIAHQLVKWKTEN-TVRLPVAFNVSTRELYTDGLTASLKKTIAETGLS 442

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P   +L  +ES ++ + +  R  L  +R++G+++++DDFGT  S L YL  +P D +K +
Sbjct: 443 PHLFELEITESSLIEDMDEVRANLCDIRQLGVTVSIDDFGTGYSSLRYLSTLPIDLLKID 502

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S + G   +E   +I+ S I MA ++   +IA+ +  +  +  L   GCD IQ    + 
Sbjct: 503 SSFIAGLANSEGMKSIVESTIAMAHSLNMPVIAEGVSAKEQLDFLIAKGCDQIQGYLCSP 562

Query: 943 PLGFNSILKLLKER 956
           PL    +   L++ 
Sbjct: 563 PLPPEELEMFLQKH 576


>gi|313110052|ref|ZP_07795955.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
 gi|310882457|gb|EFQ41051.1| putative sensory box protein [Pseudomonas aeruginosa 39016]
          Length = 899

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRNGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I MA N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|307318092|ref|ZP_07597528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sinorhizobium meliloti AK83]
 gi|306896133|gb|EFN26883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sinorhizobium meliloti AK83]
          Length = 1071

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 128/581 (22%), Positives = 249/581 (42%), Gaps = 32/581 (5%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              +         +   +  ++ S  +  + D V  +D          +   +L +   ++
Sbjct: 509  AKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLFDADWRVRYLNENARKLLQVGDEAL 568

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                R +       +  +F       +  R      +    ++     W+     P  + 
Sbjct: 569  G---RVFWKLFPEEEEGSFAKHCREVMDRRVRSFFEDH--LSSLG--RWVEANASPTRD- 620

Query: 506  NGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                        DITE++++ E        +   A  D LTG+ NR  F +     L+ S
Sbjct: 621  -----GISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNES 675

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               ++ R  V+ +D+D +K +ND LG   GD +L  ++ R+ + ++  + +ARL G+ F 
Sbjct: 676  ---NHARMAVLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQSVRTTETVARLGGDEFA 732

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            II     +  +    A  +  +++ P ++     TV  SIG A       ++ E++K A+
Sbjct: 733  IIQPLTESRDEAFRLAQRLIDTLSEPFSIEGAAATVGTSIGIAFAPEDGTSADELIKAAD 792

Query: 679  LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            +A+Y AK  G    + F   + +       +K  +  A+   E  L Y P++ L    + 
Sbjct: 793  IALYSAKSSGRGTYKLFDVAMHAQLQTHQQMKITMRDALARGEFELHYQPLVSLESRCVS 852

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              EAL++W HP  G I+ SEF+ IAEE  +I  I  ++L    R    W ++     + +
Sbjct: 853  CCEALLRWRHPDRGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPER-----VSV 907

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N++        L   +   +S T   P+R++L  +E+V++   E +  LL  LR++G+
Sbjct: 908  AVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGV 967

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
             + +DDFGT  S L YL   PFD +K + + +      +   AI++++  + +++  T  
Sbjct: 968  KIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTS 1027

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + +  E  +  +   G + +Q    + PL    I KL+  
Sbjct: 1028 VEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAAEISKLIAA 1068



 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + V++ +      +  +     R       +  ++W  D   D            G    
Sbjct: 248 YGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  IH +DR   +         +   ++ E+R+R AD  + W+I   +P  
Sbjct: 308 EALG--FGWVDVIHPDDRQAVQETFFRATAGK-EPVRSEYRLRRADGSWAWVIDVGQPRF 364

Query: 504 NSNGDILRYIGIANDITEQKKSL-EGILCNAF 534
           ++NG  L Y+G   DIT ++ +        AF
Sbjct: 365 SANGTFLGYVGSVLDITGRRAAEIAQQEAQAF 396



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                I  +       + + +  E     V     + W  D   + +   P  + + GL 
Sbjct: 120 FVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTADTAGEVLEVGPRWSELTGLG 179

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W   +H  D +  +      +         E+R+      + W   R   
Sbjct: 180 EKETLGS--GWAKAVHPQDAEALQEEWRRSLA-SGAPFDCEYRLLTKTGDYRWFRARAAA 236

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
             +++G I+R+ G+  DI E++++ + + 
Sbjct: 237 KRDADGKIVRWYGVLEDIDERRRAADDLR 265



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 102/320 (31%), Gaps = 34/320 (10%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           QP        +  +     I    A     Q   +           S D V   D+    
Sbjct: 361 QPRFSANGTFLGYVGSVLDITGRRAAEIAQQEAQA---FIRSIFDSSPDCVRVLDMEGRP 417

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        I GL  G+     + W      +D D      +S    +  R   E  VR 
Sbjct: 418 LLMNEAGRRIFGLNEGAPV-TGQTWDSIGRASDADKVEAAWESVRRGKTARF--EISVRD 474

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           A  +   M +   P+++ +G   R + I  DIT+ K++ + I               ++ 
Sbjct: 475 AGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRH--------AEAA 526

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGI--AVGDDVLVSLTRRIGELLK 604
            D+L+++L      ++   +VM+ D D + + +N+       VGD+ L  +  ++    +
Sbjct: 527 ADQLSSVL------ESTMDSVMLFDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEE 580

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
                       F        +  ++  F      S+   +           SI     T
Sbjct: 581 EGS---------FAKHCREVMDR-RVRSFFEDHLSSLGRWVEANASPTRDGISIFCRDIT 630

Query: 665 SSKITSSE-MLKNAELAMYH 683
             +    + +L   ++A   
Sbjct: 631 ERRRAEEDTLLAQKQMAHMA 650



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +     + G  + V   D     V        +LG     + G   +    I   ++
Sbjct: 12  RSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD---ILPWEQ 68

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDI 519
            +    LD  V       + E ++   D     ++ + R +S   G       +    DI
Sbjct: 69  ADRIVSLDRIVLSTGEGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDI 128

Query: 520 TEQKKSLEGILCNAFQ 535
           T  +++ E +  +   
Sbjct: 129 TNLRRTEETLRASEEH 144


>gi|311693671|gb|ADP96544.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 916

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 143/613 (23%), Positives = 273/613 (44%), Gaps = 13/613 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           W +               +P +V G  L++  + F  +  ++ +   +Q       R   
Sbjct: 306 WLLQTRSTPAFDFLASDPRPPIVLGSGLVISALLFLFVLALIRSRLMAQ---ISAGRYRA 362

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
              G+ ++    D     +  +P    ILG     +     N+   +H +D    +   D
Sbjct: 363 ITEGAANVTLVMDRAGQPLYASPSSLDILGFEPDQV--QALNFEELVHGDDWPQLQRGFD 420

Query: 470 SFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             V     ++     R+R A  Q+  M      M +  G +   +    D+T+ K +   
Sbjct: 421 DSVQSPGKQMPVIRVRIRDAKGQWRDMEGTFTAMLSVPG-VNGVVLSLRDLTQLKAAQSE 479

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   AF D LTG+ NRQ F DRL  ++  S         +M +D+D +K+IND LG   G
Sbjct: 480 LHRLAFYDPLTGLANRQLFRDRLNHVVSRSRRSGEP-AALMFLDLDGFKRINDTLGHDSG 538

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  + + +   ++  D +ARL G+ F ++L   ++S      A  + +S+   I L 
Sbjct: 539 DELLCQVAQWLVGCVREEDSVARLGGDEFVVLLSRISDSDAAGKVAETILRSLCQRIRLN 598

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
           + E+ +T SIG          +  ++K A+LAMY AK  G N  + F  +        + 
Sbjct: 599 DHEVGITVSIGITMIPHDSEDAGTLMKYADLAMYRAKELGRNTFQFFTPAMNIKAARRLL 658

Query: 709 E--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A++     L Y P I L  E ++G+EA ++W HP+ G +S+ +F+ +AEE  +
Sbjct: 659 QQEELATALDGDRFVLHYQPKIDLASERVIGVEAFLRWHHPEKGLVSAQQFIGLAEETGL 718

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  + L +    + +         + + +N++ + L D+   + ++ +I++T  SP 
Sbjct: 719 IVRLGEWALRQACIQVQALERA-GFESLKMAVNLSVRQLTDSGFLDMIRQVITETGVSPE 777

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L     ++  +P   R LL  L  +G+ L LDDFGT    L  L  +P D +K +  
Sbjct: 778 RLELEMPAELLNEDPRMLRELLVSLHDLGVCLILDDFGTGSCSLVALQQLPLDVIKIDHR 837

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           +  ++I +A+ +  T++A+ +     +  L   GC   Q +  + PL
Sbjct: 838 FIRDIPYNVSATDVASAVIALARKLHLTVVAEGVETPQQLSFLKTHGCAQCQGNLFSYPL 897

Query: 945 GFNSILKLLKERF 957
             ++++  L  ++
Sbjct: 898 DEDALIGFLIRQY 910


>gi|218247443|ref|YP_002372814.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|257061220|ref|YP_003139108.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|218167921|gb|ACK66658.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|256591386|gb|ACV02273.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 696

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 137/558 (24%), Positives = 264/558 (47%), Gaps = 28/558 (5%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            D  R +     S + + + D   +     P  +                     H    
Sbjct: 162 KDLIRLASFPELSPNPIIEMDFSGNLTYLNPAASIKF---------KSLEQDKLKHP--- 209

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +L      +   L  E  V     +  +          S+  ++R      +IT+
Sbjct: 210 -VIAGLLSEASNIQGNLLLREITV----GEEIFEQY---VHYLSDSQLIR--SYLFNITD 259

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++ + +  +AF D LT +PNR  F ++L   L  +  +++L   V+ +D+D +K IND
Sbjct: 260 RKEAEKKLKYHAFYDTLTNLPNRTWFDEKLAIALTKAKRENHL-LAVLFLDLDSFKNIND 318

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  +GD +L    +R+   ++  D++AR  G+ F ++L   ++     + A  +   +
Sbjct: 319 TLGHPMGDQLLKQFAQRLNSCVRSGDMVARWGGDEFTLLLPQIHSPEDTVNLAQRILDEL 378

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             P  +   ++ +  SIG A +      +  +LKNA+ A+Y AK RG NH   +   ++S
Sbjct: 379 KQPFEVSGHQLYIKTSIGIAIYPQDGHDTESLLKNADAALYRAKERGRNHYRFYSSTMTS 438

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             S  + ++  L  A+E +EL L Y P ++L + +I G+EAL++W HP+ G +S ++ + 
Sbjct: 439 KASMLLKLENLLYQAIEQNELSLHYQPQLKLKNHKISGMEALLRWYHPELGQVSPAKLIP 498

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+  +I  ++L++L    +   +W+     PP+ + +N ++K      + E +  ++ 
Sbjct: 499 LVEKTDLIVPVSLWVLRTACQQNKTWQKAGL-PPVTMGVNFSAKQFQQPNIVEMVSQVLG 557

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P  ++L  +E+ +M N E S+  LG LR++G+ ++LDDFGT  S LSYL   P  
Sbjct: 558 ETNLDPQLLELEITETALMENIEFSQETLGELRQLGVKISLDDFGTGYSSLSYLQKFPVT 617

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S +     T    AI+ ++I + K+    +IA+ +     ++ L ++ C+ IQ 
Sbjct: 618 TLKIDQSFIQSVQDTPPNTAIISAVIALGKSFNLRVIAEGVETLKQLELLQQLNCEEIQG 677

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL   +  + L  
Sbjct: 678 YWFSRPLTPENATQFLSR 695


>gi|15600210|ref|NP_253704.1| hypothetical protein PA5017 [Pseudomonas aeruginosa PAO1]
 gi|254238273|ref|ZP_04931596.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254244099|ref|ZP_04937421.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9951304|gb|AAG08402.1|AE004914_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126170204|gb|EAZ55715.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126197477|gb|EAZ61540.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 899

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I MA N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|89901664|ref|YP_524135.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89346401|gb|ABD70604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1114

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/577 (24%), Positives = 256/577 (44%), Gaps = 17/577 (2%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +I  + A     + +     R       S D  W+ D     V       T + L   +
Sbjct: 539  GLITDITARKQSEERLRESEARFRALTELSSDWYWEQDAQFRFVRLDGSSQTSMRLPEDN 598

Query: 445  MHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              G          +        R +L +          +E     A     W+ I   P+
Sbjct: 599  YLGVTRWETDAQGVSQAQWAAHRAVLQAH----ETFHDFEMLCTDAVGCLTWVAISGTPI 654

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +  G    Y GI  DI+E+K++ E I   AF D LT +PNR+  +DRL   L  SA + 
Sbjct: 655  FDVQGQFKGYRGIGRDISERKRAEEKIERLAFYDVLTDLPNRRLLMDRLQQALVSSAREH 714

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 ++ ID+D +K +ND  G  VGD +L  + +R+   ++  D +ARL G+ F ++L 
Sbjct: 715  GA-GALLFIDLDNFKDLNDTQGHDVGDALLQQVAKRLLASVRETDTVARLGGDEFVVMLQ 773

Query: 623  SENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
                +       +      +   +  P  L   E   T SIG   + + + T  ++LK A
Sbjct: 774  GLERTQADAITQVEQVGRKIMAQLNQPYRLGSAEHHSTPSIGVTLFDNQQQTLDDLLKQA 833

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            +LAMY AK  G N +  F  +          ++ +L   +   EL L Y P++   D  +
Sbjct: 834  DLAMYEAKSAGRNTLRFFDPTMQALVTQRTALELELRHGLARDELVLFYQPVVD-QDARV 892

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            VG+EAL++W HP+ G ++   F+ +AE+  +I  +  ++L      ++SW  QA    + 
Sbjct: 893  VGVEALVRWQHPQRGLVAPLAFIPMAEQTGLILPLGQWVLRVACLQLVSWSAQAATERLT 952

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            + +N++++     E  + +  ++ +T  +P R+K+  +ES+++ + + +   +  LR +G
Sbjct: 953  MAVNVSARQFRQPEFVQQVLTMLRQTGANPKRLKMELTESLLLTDTQDAIAKMSELRDVG 1012

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTI 913
            +  +LDDFGT  S LSYL  +P   +K + S +    +     AI R+++ + +++   +
Sbjct: 1013 VRFSLDDFGTGYSSLSYLKLLPLQQLKIDQSFVRDVLTDPNDAAIARTVLALGQSLGLGV 1072

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +A+ +        L + GC   Q      P+    + 
Sbjct: 1073 VAEGVETVGQRDFLLQHGCTRFQGYLFGKPVPIAQLR 1109



 Score = 79.2 bits (194), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 8/166 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIATI 437
           I F V+Q V      +  +                +V+   +  D        +  +  I
Sbjct: 404 IVFGVVQDVTHERAAALALQDRLGFIQNITSRVPGMVFQLRLKTDGRFQFGYVSDLVREI 463

Query: 438 L-GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G++   +       L   H +D   F   + +     +   ++E+R+R  D +  W++
Sbjct: 464 FRGVSPEQIMQDAAGILKLHHPDDVSEFIASIKASARELK-PWRHEYRLRFEDGEVRWLL 522

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGI 541
            +  P   ++G +L + G+  DIT +K+S E      A    LT +
Sbjct: 523 GQATPEREADGTVL-WNGLITDITARKQSEERLRESEARFRALTEL 567



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +             +    W        +  +  +  + GLA GS+          I
Sbjct: 297 NERLNQQIHLFESMENLAAVGYWTSGADPATLRWSKGMYRLAGLAPGSVMHRSVG-RSRI 355

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D++ F     +           E++    D + HW   R++  S   G+ +   G+ 
Sbjct: 356 RAEDQEKFAQARRAV-----DGAIVEYQWEHPDGRMHWHRSRMQHGSGEGGEAI-VFGVV 409

Query: 517 NDITEQKKSLEGILCNAFQDNL 538
            D+T ++ +       A QD L
Sbjct: 410 QDVTHERAAA-----LALQDRL 426


>gi|205373191|ref|ZP_03225995.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Bacillus coahuilensis m4-4]
          Length = 446

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 233/447 (52%), Gaps = 7/447 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E  K    +   A  D LT + NR  F+D+    +  +  DD     ++ ID+D++K 
Sbjct: 2   IVELLKVQTDLEYLAHFDPLTNVYNRNYFIDKFKDFVFYA--DDKDEMALLFIDLDRFKI 59

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND+LG   GD VL  +  R+  + K  +++ RL G+ F I++    +   +   A  + 
Sbjct: 60  INDMLGHLEGDTVLKGVAERLMNVCKEENVIGRLGGDEFIILVPKIRHMDDVLILAQNII 119

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++++P  L   E  +TAS+G + +         ++KNA++AMY AK RG N+ + F  +
Sbjct: 120 NTLSLPYKLKGGEYYITASVGISVFPQDGDDIQTLIKNADIAMYSAKERGKNNYQFFDDA 179

Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  +V I+++L  A+E +EL L Y P + +   +I G+EALI+W  P  G +S + 
Sbjct: 180 IKEKIVSKVQIEQELRHAIERNELELHYQPQVNIQTGKIEGVEALIRWMSPTLGFVSPAT 239

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  MI  I  ++LE  A+    W D      + + +NI+    ++  L + +  
Sbjct: 240 FIPIAEDSGMIMEIGNWILETAAKQAKVWHDM-GYSELTMSVNISMIQFMNPTLIQSVNH 298

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++K+  +PS +KL  +E+V M  PE  R +L RL+++ I   LDDFGT  S L+YL  +
Sbjct: 299 ALNKSSLNPSFLKLEITETVAMSEPELVREILLRLKELNIEFALDDFGTGYSSLNYLKNL 358

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +      +    I+R++I +A ++   +IA+ +     + +L  + CD 
Sbjct: 359 PVDILKIDRSFIQDIDIDKNDFTIVRALIEVAHSLGMLVIAEGVETTSQLSKLGEVNCDM 418

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVK 961
           +Q    + PL  N    LL  +FP+V 
Sbjct: 419 LQGYVFSRPLPANEFETLLSSKFPIVS 445


>gi|116053165|ref|YP_793486.1| hypothetical protein PA14_66320 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588386|gb|ABJ14401.1| putative sensory box protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 899

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 275/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDSATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I MA N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|316933824|ref|YP_004108806.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601538|gb|ADU44073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 861

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 138/576 (23%), Positives = 261/576 (45%), Gaps = 41/576 (7%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRD 462
           +R S+AV      +  +D     +        I  L+  ++   +R  + +  +     D
Sbjct: 306 QRYSIAVDNMAQGLSLFDAAGRLLLYNRRYLEIYRLSPDAVKPGLRGSDIVELLEKAGHD 365

Query: 463 NFR----TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                            R   + EF    +D     ++I   P+         ++    +
Sbjct: 366 PHLIQQYHAFAMKNAGARSSFETEF----SDG--RTILITREPIQGG-----GWVMTHEE 414

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+K++   I   A  D+LTG+PNR SF   L   L+L   +   +  ++ IDID++K 
Sbjct: 415 ITERKRADSRIHHLAHYDDLTGLPNRSSFRKHLGDALELI--EPGDQLALLYIDIDEFKI 472

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD +L  +  R+   L   D +ARL G+ F +++    ++  + D    ++
Sbjct: 473 VNDTLGHPVGDQLLKCIAERLQRCLAQADYVARLGGDEFAVVM---ADATTVRDLVATLQ 529

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++    +     I+  ASIG A    +     +++  A+LA+Y AK  G      F   
Sbjct: 530 LALRETFDCAGHVISPDASIGIALAPENGREVDDLIAKADLALYAAKSEGRRTYRFFMPE 589

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  +  +L  AV   + +L + P++ L    I G EAL++W HP  G +S +E
Sbjct: 590 MDIKAKARHELATELKRAVAEHDFHLHFQPLVDLNSGAIAGCEALLRWQHPLRGFVSPAE 649

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ +I+ +  ++L+      + W        + + +N++      +     + A
Sbjct: 650 FIPLAEDIGLIEELGEWVLDHACGVAVGWPAS-----MTVAVNVSPIQFRRSTFPLKVAA 704

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++T   P R++L  +E++++ + E +  +L +LR +G+ + LDDFGT  S LSYL   
Sbjct: 705 TLARTGLPPHRLELEITEALLLQDTESTLAILNQLRALGVKIALDDFGTGYSSLSYLHRF 764

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFD +K + S +   T +    AI+R+I+ +A     T +A+ +        L ++GC  
Sbjct: 765 PFDKIKIDKSFVDTLTAEAGSAAIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRQLGCQQ 824

Query: 935 IQDSHVASPLGFNSILKLL----------KERFPLV 960
           +Q    +  L  +++ +L+          + R PL 
Sbjct: 825 MQGYLFSPALPADALARLIGLPSAEGQTAQRRAPLT 860


>gi|312112340|ref|YP_003990656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|311217441|gb|ADP76045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 247/593 (41%), Gaps = 20/593 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           +    LV  +   V ++G              Q +    +R       + + +       
Sbjct: 239 MWISFLVFLVWEAVYILGVYAQIGRKLFAKHKQELEVSEKRFKRLSEMTAEGIIVH-AHG 297

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +        + G     +          +      N           R    +   ++
Sbjct: 298 KVIEANKAACQLFGYVEKEIIHMPIQ--DLVIPESLKN---------AGRCQEGKCAIQL 346

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R  D       + ++   +   +    +    DITE+K S E   C A  D+LTG+PN++
Sbjct: 347 RRKDGTIFNAEV-VQYEYDYGANKKVNVAAIRDITERKNSKEKRQCIAVHDDLTGLPNKE 405

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +    +   +  ++        VM+++I   K IND  G +VGD VL+ +     +    
Sbjct: 406 ALHRAIAEKIQEASCR-REEVAVMLLEISGMKTINDFYGYSVGDQVLLRVVEEWKKRCDE 464

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             +L R SGN F  +L       K    A  + +    P+ +   E+ V   IG + +  
Sbjct: 465 SILLGRWSGNEFIAVLSGST-KEKAKALANQLSEIADEPVVVDGLELYVMIKIGISQYPK 523

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLV 723
               +  +++ A++A Y  +    +    F     R  +  I  +++L  A+E  E  L 
Sbjct: 524 DGTNAKTLIRKADIARYKLRQNAASQFLFFEKPMTREIQEKIATEQELRRALEREEFVLY 583

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P I+L    + G+EALI+W+HP+ G IS   F+ +AE+  MI  IN +++    +   
Sbjct: 584 YQPQIQLDTGMVTGMEALIRWNHPEKGLISPYAFISVAEQTGMIIPINEWVIRMACQQTK 643

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   P + + +N++  +  +      +  L+ +T   P  + L  +E + M + E+
Sbjct: 644 QLLKDF--PNLSVSVNLSPYEFENRRFVHKLVKLLEETGIPPHHLDLEITERMTM-DTEK 700

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           +  +L RL+ IG+++++DDFGT  S LSYL  +P D +K + S +     K+ AIL +II
Sbjct: 701 AIAILKRLKSIGVTISMDDFGTGYSSLSYLTALPIDRLKIDRSFVRNIHGKKEAILPAII 760

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  NI   ++A+ +  E ++  L    CD  Q  + A PL +  ++  L E 
Sbjct: 761 RLGHNIGVKVLAEGVETEEEVAYLKDKHCDEAQGYYFAPPLSYEELIVFLCEH 813


>gi|253698749|ref|YP_003019938.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M21]
 gi|251773599|gb|ACT16180.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M21]
          Length = 721

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 237/450 (52%), Gaps = 10/450 (2%)

Query: 511 RYIGIANDITEQ----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +  + ++I E+    ++    +   A  D LT +PNR  F DRL   L+ +  +     
Sbjct: 246 GFNEMLSEIEERNQILRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALNQAERNRQA-L 304

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           +V+ ID+D +K IND LG   GD +L+ +  R+  +++  D +ARL G+ F +   +  N
Sbjct: 305 SVIFIDLDHFKDINDTLGHRTGDLLLIDVANRLSTVVRSCDTVARLGGDEFTVFTQNVMN 364

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +   A  A  +    A P  L E EI VTASIG   + +   T  E+L NA++AMYHAK 
Sbjct: 365 ADNAAIVAAKLNALFAKPFQLGESEIYVTASIGVTLFPNDGKTVDELLMNADIAMYHAKA 424

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F   ++   ++RV +  DL LA+E  E  L Y P + L+   +  +EAL++W
Sbjct: 425 CGKNVYKMFDRKMNEHANERVTLLSDLRLALEREEFVLHYQPKVDLLTGNVTSVEALVRW 484

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G ++  +F+ ++EE   I  +  ++L         W++Q     + + +N++   
Sbjct: 485 MHPRLGMLAPDKFIRLSEESGFIVELTDWVLRTACTQAKKWQEQNLG-SVRVAVNLSPYH 543

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               ++ E + +++  T   P+ +++  +ES +M N E +  L   LR++G+++++DDFG
Sbjct: 544 FQRQDVKEAIFSVLDATGLEPALLEIEITESALMQNDEYTCALFRELRELGMTISVDDFG 603

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P +T+K + + +     + +  AI+ +II MAK++   I+A+ +    
Sbjct: 604 TGYSSLSYLHRFPINTLKIDRTFILNMMKSSEDQAIVTAIIAMAKSLNMQIVAEGVETVD 663

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +++L   GC  IQ   V+ P+   S+ + 
Sbjct: 664 QLEKLKDQGCHEIQGFLVSRPVAAESVTQF 693


>gi|116053592|ref|YP_793919.1| hypothetical protein PA14_71850 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588813|gb|ABJ14828.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 950

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 378 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 437

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 438 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 494

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 495 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 554

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 555 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 613

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 614 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 673

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 674 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARPDSVEA 733

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 734 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 791

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 792 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 851

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 852 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 911

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 912 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 948



 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 126/400 (31%), Gaps = 31/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDW++   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWNLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +   ++G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVF--SAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 364

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 365 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 404


>gi|330994533|ref|ZP_08318457.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329758387|gb|EGG74907.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 696

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/611 (21%), Positives = 255/611 (41%), Gaps = 31/611 (5%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-----------QSL 409
            L   I+            + +      H +A+    Q    D  R              
Sbjct: 101 LLRGYIVTRGGRYLGTGSALDLITASHSHAVASAASLQEAAEDLRRANRKILRDKLFIDT 160

Query: 410 AVLGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            V      +    +     V        + G     +    R+       ++  +    +
Sbjct: 161 IVENIPSALLVRSLRHGHLVLVNRAAEAMTGCRRDLLV--ERDVEDVFTPDEIGHLL--V 216

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             F G  +G ++    +         +  R   +++  G     + +A+D+TEQ+ +   
Sbjct: 217 SRFAGGGQGVIEKV--LCDHTGAKRAISTRQVTIADERGAPRWELCVADDVTEQRNAQHQ 274

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LTG+ NR  F  RL               T++ ID+D +K +NDV G A G
Sbjct: 275 VELLAHYDPLTGLANRALFSSRLEAACAA-----GSTATLLCIDLDYFKTVNDVYGHAAG 329

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  ++ R+    +  D++ARL G+ F II        ++   A  + ++++ P  + 
Sbjct: 330 DSLLRLVSERLRACSRPGDLVARLGGDEFAIIWPDVPAQAELTTRAREIVETVSRPYIID 389

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706
              I + AS+G A +      S  +L+ A++A+Y AK  G N  + F          R  
Sbjct: 390 GHHIVIGASVGSALYPRDAEASETLLQYADIALYRAKSLGRNGFQFFDQELRDEIQTRAR 449

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A+  + L L + P+  +    +   EAL++W HP  G I   +F+ +AEE  +
Sbjct: 450 LGSELRGAIAGNGLTLHFQPLYSMPGNRLSACEALVRWHHPTQGMIPPDQFVGLAEENGL 509

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++L     +   W  Q     + + +N++   L +      ++  ++++   P 
Sbjct: 510 IHDLGEWVLRAACTEAACWPAQ-----VRVAVNVSPIQLRNPRFIRIVEDALAQSGLPPE 564

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +E++ + N   +R +L RL +IG S+ LDDFGT  S L YL    F  +K + S
Sbjct: 565 RLEIEITENIFVQNSATNREILQRLGRIGCSIVLDDFGTGYSSLGYLRSFQFQKIKIDRS 624

Query: 887 LMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +    E+  A I+R+II +A++++  I A+ +  +     L  +GC+ +Q   +  P  
Sbjct: 625 FVQELPERGAAGIIRAIISLAQSMDIPITAEGVETQDQWTHLNDLGCNQVQGFLLGRPQP 684

Query: 946 FNSILKLLKER 956
             SI + +   
Sbjct: 685 AESIRQAILTH 695


>gi|254237873|ref|ZP_04931196.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169804|gb|EAZ55315.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 951

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARPDSVEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSRLQGWGMLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDWD+   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    +G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|91974548|ref|YP_567207.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681004|gb|ABE37306.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Rhodopseudomonas palustris BisB5]
          Length = 743

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 138/563 (24%), Positives = 257/563 (45%), Gaps = 21/563 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH-GPIRN 451
               S+ +     R   A+      +  +D  R  V +    + I  L    +  G   +
Sbjct: 181 LLSMSRTLELSNLRLDAALNNFLHGLCMFDGDRKVVVSNARFSEIYSLEPDEIECGVPLS 240

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  +    R  F          R      E      D     +++R +P++        
Sbjct: 241 AIQSVCRE-RGTFVETWSERRLGRSSHEISEVSSLL-DG--RAILVRCQPVAGG-----G 291

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           ++ +  DITE+ +S + I   A  D LTG+ NR +F +R+               +V+++
Sbjct: 292 WMTVHEDITERYRSEQQIAHMARHDLLTGLLNRGAFHERMDEACARLRRWGET-FSVIML 350

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKI 630
           D+D++K +ND LG   GD +L ++  R+   ++  D+LARL G+ F ++     +S  + 
Sbjct: 351 DLDRFKLVNDSLGHPAGDALLRAVVSRLKACIRETDVLARLGGDEFAVLQTRTKDSYEEA 410

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             FA  +   +  PI +   ++ ++ S G A        S E++KNA+LA+Y AK  G N
Sbjct: 411 VAFADRIVNCLIDPIEIEGHQLVISTSAGIALAPQHGTDSDELIKNADLALYQAKAAGRN 470

Query: 691 HVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              +F   +    + R  ++ +L  A+ + E  L Y P +      ++G EAL++W HP+
Sbjct: 471 GYVTFETAMKDRANARQQLEGELRQAILHREFDLYYQPQVDARSGRVIGAEALLRWRHPR 530

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +  SEF+ IAEE  +I+ +  ++L     + I W       PI + IN++   L   
Sbjct: 531 RGFVPPSEFIPIAEETGLIEKLGEWVLTEATTEAIRWPA-----PIKLAINLSPIQLTRG 585

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + +   +  +   P R+++  +E+V + +   +  ++ +LR +G+S+ LDDFGT  S
Sbjct: 586 KLVDTVTQALRFSGLPPGRLEVEITETVFLEDEVNNLAVIRQLRALGVSVALDDFGTGYS 645

Query: 869 LLSYLGYIPFDTVKFNGSLMTG-STEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   PFD +K +          +   AI+ S+I +A+ +  + +A+ +      + 
Sbjct: 646 SLSYLTRFPFDQIKIDKFFSMNLIDRRDCAAIVSSVITLARGLGISTVAEGVETVRQFEL 705

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   G DY Q      P+  +++
Sbjct: 706 LREAGVDYFQGYLFGHPVPASAL 728


>gi|217978836|ref|YP_002362983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylocella silvestris BL2]
 gi|217504212|gb|ACK51621.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylocella silvestris BL2]
          Length = 1248

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 145/536 (27%), Positives = 257/536 (47%), Gaps = 9/536 (1%)

Query: 427  RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
             +  + ++    G     M      +    H +D       L +      G    EFR+R
Sbjct: 700  MIYVSQNV-DQFGYDPAEMIESPELYKTLQHPDDTAKVLESLVAAATEGGGPASLEFRLR 758

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             +D  + W+     P+ +S G +L   G   DITE+K++ E I   A  D+LTG+ NR +
Sbjct: 759  RSDGVYRWVEGYSTPVRDSAGRLLEIEGTMTDITERKEAQEKIALLARTDSLTGLANRAT 818

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            FLDRL      +         V+ +D+D++K +ND LG  +GD +L ++  R+    +  
Sbjct: 819  FLDRLQQSFAAAKR-GASPFAVLYLDLDRFKDVNDTLGHGMGDLLLKAVADRLTSGCREA 877

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            D+ ARL G+ F I+     +       A  +R  +  P    E E+ +T SIG AS+TS 
Sbjct: 878  DLPARLGGDEFAILQSELTDPSGATALAATIRDLLTAPYRFGESEMQITVSIGIASYTSE 937

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVY 724
                 EML+ A+LA+Y AK  G +              +RV ++ DL  A++ +EL L Y
Sbjct: 938  SSGPKEMLEQADLALYRAKEEGRDQFRFHSEELDKEARERVALRADLARAIDRNELELYY 997

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             P + L    IVG+EALI+W+HP+ G +  ++FM I E+  +  A+  ++L+     + +
Sbjct: 998  QPQLELATSRIVGMEALIRWNHPRRGVLKPADFMSIGEKAGVSIALGHWVLDHACEQMNA 1057

Query: 785  WRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            WR     P   + +N++   L   +   + +   ++K    P  ++L  +E+++      
Sbjct: 1058 WRKAGIAPS-TLAVNLSLGQLKTGDKFVDDVMQTLAKWGLEPKELELDVTEAMLAHVTLM 1116

Query: 844  SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901
               +L RL+++G+ + +DDFGT+ S L YL       +K   S+M  +T     +A++R+
Sbjct: 1117 HNNVLDRLQQLGVQIAIDDFGTQYSSLCYLRTYHVSRLKIPRSVMEAATHDSGSLAMVRA 1176

Query: 902  IIPMAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKER 956
            II +A+ +   ++A+ +  E     LT       +Q  + + P+  +   +LL+  
Sbjct: 1177 IIGIARELNIEVVAQGVETEKQRALLTSAPSPTKVQGFYYSEPVQADRAAELLRNE 1232



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 9/189 (4%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           A   + +  I     +       ++  A+   L   ++       ++ L+       +  
Sbjct: 311 ARWTMVVTPIPGATFLAGHEPA-VLVAAMGLLLTAAIMTYVEITRRNNLSLRGLVTNLRE 369

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-R 461
              R       + D +   D+  +     P    I G     + G   +    +     R
Sbjct: 370 SEARFRRVTDNAHDAIIKADVEGNVNFWNPAAERIFGYKEKEILGRSVH--QLLTPERYR 427

Query: 462 DNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 L  F     G +     E      D     + + +  +    GD    I I  D
Sbjct: 428 TKAHAELTRFSQTGEGAVVGRTVELYGLRKDGSEFPIDLSVSAV--PRGDAWSSIAIVRD 485

Query: 519 ITEQKKSLE 527
           +TE+ ++ +
Sbjct: 486 VTERVRTAD 494


>gi|15600635|ref|NP_254129.1| hypothetical protein PA5442 [Pseudomonas aeruginosa PAO1]
 gi|313111619|ref|ZP_07797418.1| hypothetical protein PA39016_003370095 [Pseudomonas aeruginosa
           39016]
 gi|9951772|gb|AAG08827.1|AE004957_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|310883920|gb|EFQ42514.1| hypothetical protein PA39016_003370095 [Pseudomonas aeruginosa
           39016]
          Length = 951

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARPDSVEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDWD+   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    +G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|194014997|ref|ZP_03053614.1| ggdef domain/eal domain protein [Bacillus pumilus ATCC 7061]
 gi|194014023|gb|EDW23588.1| ggdef domain/eal domain protein [Bacillus pumilus ATCC 7061]
          Length = 807

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 154/775 (19%), Positives = 316/775 (40%), Gaps = 50/775 (6%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS---SLIIFLF 270
           +  + +   A+   +  +       ++  +++ +G            L+S   SLI F  
Sbjct: 41  KKKVWLIVGALIMGMGIWSMHFISMMA--LHVRAGITYETPLLILSILASFVGSLIAFTI 98

Query: 271 MY---LHWNRWHA----KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
                L   R           I       +  +  +S  Y  V   ++    A    +  
Sbjct: 99  CIQEQLSTRRLLISSITMGSAICSMHYLGMESMANVSISYDPVLFFLSFFIAAIASFFSL 158

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND------------------ 365
           +        G ++   L+     + +      M  T    +                   
Sbjct: 159 HLFFRLHRSGKKQEDHLLKIAGALVMGGAVSGMHYTGMAASTMFFHSDGQSPGGGSLELS 218

Query: 366 -IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                  +G + LIV  +              +  +  + +R    +  + D +    + 
Sbjct: 219 PFSLSIFIGLMTLIVQTLMIFGAYIDHRIMKQADKLKENEQRFQSLIKHNIDGIIVLSVN 278

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           R  ++       IL +   S  G   +   Y+   D      + + F+   +  +  E  
Sbjct: 279 RKVLSANDSGKQILKM-CNSWIG--DDVSQYVMPTD------MWEEFIYESKKAITREAE 329

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           ++AAD +F++  +   P+   N  +     +  D+T+Q+ + + I   A  D LT +PNR
Sbjct: 330 LKAAD-RFYYYHVTYIPVH-VNNTLDSIYLVLKDLTQQRIAEKEIHVMAHYDALTELPNR 387

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +  ++ L+ +L  +  +      V+ +D++++K IND LG  +GD +L +   R+ + L 
Sbjct: 388 RHAINHLSDVLS-AQEETGTSTAVLFLDLNRFKIINDALGHNIGDLLLKAAANRLTQCLP 446

Query: 605 FPDILARLSGNRFGIILISE-NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               +ARL G+ F +I     +++ KI   +  + +    P  +   ++  + SIG A  
Sbjct: 447 DNGFIARLGGDEFLMIFPDMGHDTQKIEQLSQNIIRQFERPFFIQNHQLITSISIGIAIS 506

Query: 664 TSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
             +     E+++ A++AMY +K   +      +  +     DR+  + +L  A++  +  
Sbjct: 507 PQNGKDGMELMRKADMAMYLSKKHEQSRYEFFTESMERSSEDRLNRELELRDAIQREQFV 566

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P +     ++ G+EAL++   P     S   F+ +AEE  +I  I  ++++   R 
Sbjct: 567 LHYQPQVSAKTRQMTGVEALLRMKAPDGSLKSPEAFIELAEESGLIIDIGRWVIDTACRQ 626

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             +W D      I + +N+++K     +L + ++  + K   +PS ++L  +ES+ M N 
Sbjct: 627 AKTWYDNG--LKIPVAVNLSAKQFNSEDLIDLIKLTLKKYDMTPSLLELEVTESMTMDNI 684

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
           ++S+ +L  L+ +G+ +++DDFGT  S LSYL  +P   +K + S +       K   I 
Sbjct: 685 KQSKQVLTSLKHLGVRISIDDFGTGHSSLSYLKDLPIHRLKIDKSFIEDILNDSKSEQIT 744

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +II M   +   +IA+ +      + L+  GCD +Q  + A PL  N I K + 
Sbjct: 745 GAIIAMGHQLSLEVIAEGVETFAQAQLLSAQGCDDLQGFYYAKPLPANDIEKFIA 799


>gi|107104546|ref|ZP_01368464.1| hypothetical protein PaerPA_01005624 [Pseudomonas aeruginosa PACS2]
          Length = 951

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/577 (22%), Positives = 267/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++   E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVPGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASARADSVEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDWD+   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    +G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|254242994|ref|ZP_04936316.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196372|gb|EAZ60435.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 951

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/577 (23%), Positives = 268/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  A  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGTAALSRLAERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASGCADSVEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDWD+   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    +G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|221066375|ref|ZP_03542480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220711398|gb|EED66766.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 809

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 149/635 (23%), Positives = 273/635 (42%), Gaps = 15/635 (2%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               KG    V +    +   +           R        AL   + + V  +     
Sbjct: 181 MALAKGDPLPVFMDVGSLPALVKQALQHQHARGRSQLHFHAQALAIPVSITVHSLQQPDG 240

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                     + +    +     +     +    W         + TP  A ILG   G 
Sbjct: 241 HAQPRLLITVEDLRKQEQLNRDLLNAQEVANIGTWLSYFDGKP-SLTPQAARILGWPVGQ 299

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 + L  +H  DR          +    G   +E R++       W+        +
Sbjct: 300 -PFKYADLLGCVHAEDRAYADAQWKKGLA--TGHYAFEMRIQDGT-SVRWVDALGTIEHD 355

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G  +R  G   DITE+K++   +   AF D LTG+PNR   +D    +LD++      
Sbjct: 356 VTGKPVRGYGTLLDITERKRTERRMEKLAFFDALTGLPNRFHGIDLAQRLLDIAGQRGQ- 414

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           + TV+ +D+D++K+IND  G  VGDD+L  + RR    L    ++ARL G+ F + + + 
Sbjct: 415 QATVLFVDLDRFKEINDSQGHLVGDDLLAEVARRCERTLGGEGVVARLGGDEF-MFVRTL 473

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  +  ++A P+ + +    V AS+G A + +   +  E+L+ A++AMY A
Sbjct: 474 AEGNDTMALAHEVCSTLASPMRVDDLCFEVGASVGVALYPTHGHSVDELLQRADIAMYQA 533

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +GG + + +        +  I     L  A+  S L L + P I L    + G+EAL 
Sbjct: 534 KTQGGGNCQLYDAQMGHRLQRRIALGVKLEEALAQSRLELHFQPKIALDSYALYGVEALA 593

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   +WG +S +EF+ +AEE  +I A+  + L+  AR   +W       P  I +N+++
Sbjct: 594 RWHDEEWGWVSPAEFISVAEERGLIIALGDWSLDAAARQWRAWSSAGIAQPPVIAVNVSA 653

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             ++ +   E   A++     SP  I+L  +ES +M +P +++ +  +L + G +L++DD
Sbjct: 654 AQMMSDSFSERALAIMRAHGVSPRCIELEITESALMHDPAKAKRVASQLVEQGFTLSIDD 713

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+ L   P   +K + S + G       +AI+ ++I +A  ++   +A+ +  
Sbjct: 714 FGTGYSSLARLQSFPVSRLKIDMSFVRGMLSEPGSLAIVTAVIGLAHALKLRTVAEGVET 773

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
           +  + +L  + CD +Q    +  +    + +  L 
Sbjct: 774 QSQLDKLRDLHCDEVQGYLFSKAVPAAELARDWLT 808


>gi|193782686|ref|NP_436089.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|193073142|gb|AAK65501.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 1071

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 127/581 (21%), Positives = 248/581 (42%), Gaps = 32/581 (5%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              +         +   +  ++ S  +  + D V   D          +   +L +   ++
Sbjct: 509  AKRASDEISRAQRHAEAAADQLSSVLESTMDSVMLLDADWRVRYLNENARKLLQVGDEAL 568

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                R +       +  +F       +  R      +    ++     W+     P  + 
Sbjct: 569  G---RVFWKLFPEEEEGSFAKHCREVMDRRVRSFFEDH--LSSLG--RWVEANASPTRD- 620

Query: 506  NGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                        DITE++++ E        +   A  D LTG+ NR  F +     L+ S
Sbjct: 621  -----GISIFCRDITERRRAEEDTLLAQKQMAHMARHDMLTGLANRMFFRECFEEALNES 675

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               ++ R  V+ +D+D +K +ND LG   GD +L  ++ R+ + ++  + +ARL G+ F 
Sbjct: 676  ---NHARMAVLCLDLDGFKAVNDTLGHPAGDALLRQVSTRLIQAVRTTETVARLGGDEFA 732

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            II     +  +    A  +  +++ P ++      V  SIG A       ++ E++K A+
Sbjct: 733  IIQPLTESRDEAFRLAQRLIDTLSEPFSIEGAAANVGTSIGIAFAPEDGTSADELIKAAD 792

Query: 679  LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            +A+Y AK  G    + F   + +       +K  +  A+   E  L Y P++ L    + 
Sbjct: 793  IALYSAKSSGRGTYKLFDVAMHAQLQAHQQMKITMRDALAKGEFELHYQPLVSLESRCVS 852

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              EAL++W HP+ G I+ SEF+ IAEE  +I  I  ++L    R    W ++     + +
Sbjct: 853  CCEALLRWRHPERGMIAPSEFIPIAEETGLIVPIGEWILGEACRQAARWPER-----VSV 907

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N++        L   +   +S T   P+R++L  +E+V++   E +  LL  LR++G+
Sbjct: 908  AVNLSPVQFKHRNLVRAVAKALSATRLDPARLQLEITETVLLDESEHNLELLQDLRRLGV 967

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
             + +DDFGT  S L YL   PFD +K + + +      +   AI++++  + +++  T  
Sbjct: 968  KIAMDDFGTGYSSLGYLRSFPFDKIKVDQAFVRDLPHGKESLAIVKAVAGLGQSLGMTTS 1027

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + +  E  +  +   G + +Q    + PL    I KL+  
Sbjct: 1028 VEGVETEDQLAVVDSEGFNEVQGYLFSRPLPAAEISKLIAA 1068



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + V++ +      +  +     R       +  ++W  D   D            G    
Sbjct: 248 YGVLEDIDERRRAADDLRESEARFRAIADDAPVMIWVADPTGDTSFFNRLWLETTGQTEA 307

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W+  IH +DR   +         +   ++ E+R+R AD  + W+I   +P  
Sbjct: 308 EALG--FGWVDVIHPDDRQAVQETFFRATAGK-EPVRSEYRLRRADGSWAWVIDVGQPRF 364

Query: 504 NSNGDILRYIGIANDITEQKKSL-EGILCNAF 534
           +++G  L Y+G   DITE++ +        AF
Sbjct: 365 SADGTFLGYVGSVLDITERRAAEIAQQEAQAF 396



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 3/149 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                I  +       + + +  E     V     + W  D   + +   P  + + GL 
Sbjct: 120 FVVVTIVDITNLRRTEETLRASEEHYRSLVDLHPQVPWTADTAGEVLEVGPRWSELTGLG 179

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W   +H  D    +      +         E+R+      + W   R   
Sbjct: 180 EKETLGS--GWAKAVHPQDAGALQEEWRRSLA-SGAPFDCEYRLLTKTGDYRWFRARAAA 236

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
             +++G I+R+ G+  DI E++++ + + 
Sbjct: 237 KRDADGKIVRWYGVLEDIDERRRAADDLR 265



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 103/320 (32%), Gaps = 34/320 (10%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
           QP        +  +     I    A     Q   +           S D V   D+    
Sbjct: 361 QPRFSADGTFLGYVGSVLDITERRAAEIAQQEAQA---FIRSIFDSSPDCVRVLDMEGRP 417

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        I GL  G+     + W      +D D      +S    +  R   E  VR 
Sbjct: 418 LLMNEAGRRIFGLNEGAPV-TGQTWDSIGRASDADKVEAAWESVRRGKTARF--EISVRD 474

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           A  +   M +   P+++ +G   R + I  DIT+ K++ + I               ++ 
Sbjct: 475 AGGEERCMDVISAPITDHHGKPFRILSIWRDITDAKRASDEISRAQRH--------AEAA 526

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGI--AVGDDVLVSLTRRIGELLK 604
            D+L+++L      ++   +VM++D D + + +N+       VGD+ L  +  ++    +
Sbjct: 527 ADQLSSVL------ESTMDSVMLLDADWRVRYLNENARKLLQVGDEALGRVFWKLFPEEE 580

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
                       F        +  ++  F      S+   +           SI     T
Sbjct: 581 EGS---------FAKHCREVMDR-RVRSFFEDHLSSLGRWVEANASPTRDGISIFCRDIT 630

Query: 665 SSKITSSE-MLKNAELAMYH 683
             +    + +L   ++A   
Sbjct: 631 ERRRAEEDTLLAQKQMAHMA 650



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +     + G  + V   D     V        +LG     + G   +    I   ++
Sbjct: 12  RSHDLFQRLMDGIAEPVIIKDDASRFVFINDAACDLLGKDRNQLIGRTDHD---ILPGEQ 68

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDI 519
            +    LD  V       + E ++   D     ++ + R +S   G       +    DI
Sbjct: 69  ADRIVSLDRIVLSTSEGHELEEQITTPDGTQRTLLTKKRCVSIPAGSTQEKFVVVTIVDI 128

Query: 520 TEQKKSLEGILCNAFQ 535
           T  +++ E +  +   
Sbjct: 129 TNLRRTEETLRASEEH 144


>gi|170746830|ref|YP_001753090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653352|gb|ACB22407.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 801

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 143/723 (19%), Positives = 271/723 (37%), Gaps = 19/723 (2%)

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
               +    L           + ++I                          +      +
Sbjct: 57  FWGIVSHAYLSGLAVAVTALCAVAMIAMRRYRGRLGDRSIAREAFAVLHGLALGRGLAWA 116

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
               ++  S+       +       I +  + G   + L + A   +             
Sbjct: 117 SMPAILLPSVDNAYRIVVGAVCAALISHAYVAGPIFS-LSLLAVAPVVAGIFVGLAGCES 175

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTV--IQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
            +   +     +    + V          Q +           + G        G+ D +
Sbjct: 176 PVGEYVAVLLSLYAAFVFVSARRMCRHSYQRLCDRVMVQAQSETIGFLLKDFAEGTSDWL 235

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRR 476
           W+ D V         +A +LG+    +     + L   +   +        + + +  R 
Sbjct: 236 WETDTVGRLRQARAAVAALLGVEVAGLRHRTLSELLRAFADPDGDGADAQAVAAAIAARA 295

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                  R+R A     W+ +  +P+ ++ G    Y G+ +D TE +++   I   A  D
Sbjct: 296 PFRDRTIRLRTAVGT-RWITLNGKPVFDAQGAFTGYRGVGSDTTESREAQARIAFLAGHD 354

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+PNR  F D L   L  +         +  +D+D +K +ND  G  VGD +L ++T
Sbjct: 355 SLTGLPNRSGFQDALG-TLCRAVRTAERPSALFYLDLDGFKAVNDSRGHLVGDRLLRAVT 413

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+  + +    L RL G+ F +++            A  +   +  P  + E  + V  
Sbjct: 414 ARLLAIGEPH-SLFRLGGDEFAMVVRDLGRP-AAEALAARVVAELRRPFQIDEARLEVGV 471

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA 714
           S+G A      +  + +L  A+LA+Y AK  G     +F          +     D+  A
Sbjct: 472 SVGIAYMPDDAVEPASLLMRADLALYAAKADGKGCWRTFDPSLEERVVRQRQFDLDMRAA 531

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E+ L Y P++ +    + G EAL++W+ P +G +S  E + IAE    I  I  + 
Sbjct: 532 LAAGEMELHYQPLVDMRSGRVAGFEALLRWNKPGYGWVSPGEIIPIAETTGFIVEIGRWA 591

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L R   D  +W        + I +NI+S  +        + A++ +T  +P R+++  +E
Sbjct: 592 LRRACTDARTW------SDLKIAVNISSIHVRMPGFHAEVAAVLRETGLAPDRLEIEITE 645

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           SV++ +       L RLR  G+ + LDDFGT  S LSYL   PFD VK + S +      
Sbjct: 646 SVLLDHGPEVLENLKRLRATGVRIALDDFGTGYSSLSYLTEFPFDKVKVDRSFVRDLQGR 705

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +++A++ +I  MA+ +  ++  + +     +  L    CD  Q    +     + +  L
Sbjct: 706 PEKVAVVEAIARMARALSMSVTVEGVETRQQLDVLRDKRCDIAQGFLYSPARPVHEVAAL 765

Query: 953 LKE 955
           +  
Sbjct: 766 IAR 768


>gi|46201681|ref|ZP_00208207.1| COG2202: FOG: PAS/PAC domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 842

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 137/620 (22%), Positives = 270/620 (43%), Gaps = 13/620 (2%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
               +      +   ++  +          + L    +   + + +         +    
Sbjct: 211 AGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRLFIGIGRDITERKLTEAALRESE 270

Query: 405 ERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           ER          +V+  ++  D        +     ILGL    +    + +L  I  ++
Sbjct: 271 ERLRAIAANVPGMVFQRELRPDGSLSFSYVSEGCRAILGLGPEQLMDNPQLFLALIPEDE 330

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R +F   L             E  V  +D +  W+  + RP   + G+++ + G+  D+T
Sbjct: 331 RQSFYAGLGRSARTM-EPFDEEMAVPGSDGRRRWLRGQSRPTLRAGGNVV-WDGVMLDVT 388

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K + + +   A+ D LT +PNR +FL+R     + +A D      V+ + +D+   IN
Sbjct: 389 DSKLAEQRLSFLAYFDPLTRLPNRTAFLERFAAARETAARDQ-TMLAVVSVGLDRLGIIN 447

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             +G  +GD VL++    +   L   D++AR SG+RF +++    +  +  D    +R S
Sbjct: 448 ATMGHGIGDQVLMAAGDLLRAALSPNDVIARTSGDRFLVLITGLGSKREAMDALDRLRGS 507

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
               +    ++  V+A++G A +         ++KNA+ A+  AK +G    + F     
Sbjct: 508 AHATVAAAGQDFDVSAAMGAALYPRDGEDPETLIKNADAALQLAKAQGPASFQMFTKEIS 567

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +  + ++  L  A+E+ EL   Y P + L    +VG+EAL++W+ P  G +S  +F+
Sbjct: 568 ARAAKTLSLQTRLRRAIEHGELTAHYQPQVDLAGGNVVGMEALVRWNSPDLGMVSPVDFI 627

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817
            +AEE  +I  I  FML    R    W+ +     I + +N++ +       L    +  
Sbjct: 628 PVAEESGLIDGICEFMLWECTRQNKQWQTEGL-SAIPVAVNVSGRQFQYARRLLSACERA 686

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         +++  +ES  M + + + +++ +L+++GI+ ++DDFGT  S LS L   P
Sbjct: 687 LVDNHLDSRWLEVELTESSAMRDADNAIVVVNQLKEMGIACSIDDFGTGYSSLSVLKRFP 746

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +    +     AI+ +II MAK +   ++A+ +  +  +  L  +GCD I
Sbjct: 747 IAKLKIDRSFVLDVTTDPNDAAIVDAIIAMAKALRLKVVAEGVEHQAHLDFLRNLGCDQI 806

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + PL    +  LL E
Sbjct: 807 QGYFFSRPLPAEGMRALLAE 826



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  I  +LG A+ +M    +  L  +H  DRD     +           + EFR   A
Sbjct: 49  WFSASIRAVLGFAAEAMGVNSQGCLHAVHWADRDAHLAEIRRSAA-DLDTCREEFRAITA 107

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNL 538
             +  W+     P    +G +L + G+  D+T+ +++   +        D+L
Sbjct: 108 HGEVRWLKGAAEPRRQEDGSVL-WDGVMVDVTDGRRAELRLEMLMDHAGDSL 158



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHI 458
                R  + +  +GD +   +      +       + G     + G   N L    +H 
Sbjct: 141 RRAELRLEMLMDHAGDSLIVVETDGTIDSVNAAAEALFGWTMAELAGRPFNTLLPQSLHH 200

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D        +   G   G    E      D     + +    +      +  +IGI  D
Sbjct: 201 DD---LLESAEVSAGGIVGGGARELMGLRKDGSTFPLELSTTEVRLEGQRL--FIGIGRD 255

Query: 519 ITEQK 523
           ITE+K
Sbjct: 256 ITERK 260


>gi|126659446|ref|ZP_01730580.1| hypothetical protein CY0110_20780 [Cyanothece sp. CCY0110]
 gi|126619282|gb|EAZ90017.1| hypothetical protein CY0110_20780 [Cyanothece sp. CCY0110]
          Length = 721

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 128/552 (23%), Positives = 251/552 (45%), Gaps = 30/552 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465
            +  V  S   + + +         P                          + ++   R
Sbjct: 183 LASVVELSPIPIIEINNQGVITYLNPSANLKF-------------------PDLEKAQVR 223

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   +  +         +R  D +       I  ++              DIT++K++
Sbjct: 224 HPLLKGLIEKANYNNGSLVIREVDIKDQSFEQHIHYLTKEK----LIRSYIFDITQRKQA 279

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +AF D+LTG+ NR  F   ++  +      + L   ++ IDID +K IND LG 
Sbjct: 280 EMQLKYHAFHDSLTGLANRAFFDQHISLTIKNCERYNKL-LAILFIDIDNFKNINDTLGH 338

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L    +R+   ++  D++ R  G+ F +IL    +  + A FA  + K+   P+
Sbjct: 339 GIGDRILNCFAQRLTSQVRKSDLVCRWGGDEFVVILSEIQDPDQSAKFAKRLLKTFEHPL 398

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            +   +I +  SIG A +      +  +LKNA+ A+   K  G NH + +        ++
Sbjct: 399 TIERNQIYLKCSIGIACYPEDGKNAEILLKNADAALSRTKESGRNHYQFYNPEMSLEIAE 458

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  L  A++N EL L Y P I +   ++ GLEAL++W  P  G +  ++F+ IAE+
Sbjct: 459 NFALETQLHQAIKNEELILHYQPQINIKTGQVYGLEALVRWKSPNLGLVGPNKFIPIAEK 518

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  ++L+   +    W+ Q  +PP+ + +N++++ L   +L + ++ ++     
Sbjct: 519 TGLILPVGEWVLKTACQQNKKWQ-QMGLPPVRVAVNLSAQQLQQPDLIKTVEKILDLVGL 577

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  ++L  +ES++M N   +   L  LR +G+ +++DDFGT  S L YL   PFDT+K 
Sbjct: 578 EPQWLELEVTESILMKNTTLASQTLHELRNMGVYISMDDFGTGYSSLGYLKKFPFDTLKI 637

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +       + I+I+ +I+ +++     +IA+ +  +  +  L ++ C+ +Q    +
Sbjct: 638 DQSFVRELNQNPEDISIISAIMTLSRGFNMRVIAEGVENQEQLNLLQQLDCEEMQGYFFS 697

Query: 942 SPLGFNSILKLL 953
            PL    +L  L
Sbjct: 698 HPLTQEEVLNYL 709


>gi|170742697|ref|YP_001771352.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168196971|gb|ACA18918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 797

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 152/762 (19%), Positives = 291/762 (38%), Gaps = 47/762 (6%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279
               +      + +     L+    +  G  L     S       + +     +     H
Sbjct: 51  AAAVLTTSSAIWATHFIAMLAFAPGMAFGFALAPTVASFAVAVMLVSLAALAIVGSRTRH 110

Query: 280 AKVGYITFSGIACIAI-LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER-- 336
             V      G+A   +    M+ Y    T +     +A  VL      +           
Sbjct: 111 GAVAGGALIGLAIAGMHYTGMAAYRVQGTIAWDGQRVAVSVLAGIALSVLALRLSLAPQR 170

Query: 337 -------AVLLIPAWILIFIWFIGLWMAITKRLD---NDIIQPALVGGLVLIVILIGFTV 386
                    LL+      FI    L +    R+      +    +         LI    
Sbjct: 171 LARALAPLALLLAVCGAHFIGMGALSLRYDPRIALPDGSLDAAVVTILTANAAFLILGAA 230

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +  +    +   ++ +R       + + +   D     V     I  ILG     + 
Sbjct: 231 LAALRLSILNHRRRVAERQRLRDLADIAVEGLLICD-DDAIVGVNRSIERILGRGREEVI 289

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G           +               R         +R A      + +  + ++   
Sbjct: 290 GRAL-------PDLLPGLSAAAIPLTHERDAT------LRDASGAEIPVRVIAQTIAIET 336

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---SATDDN 563
                 +    D  ++ ++   I   A  D LTG+ NR  F   L  +L     +   D 
Sbjct: 337 RP--HLVVAVRDQRDRLRAEAAITHLAHHDALTGLANRLRFNGVLAELLAERFAARRHDP 394

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D++K +ND LG  +GDD+L  + +R+  ++   D++ARL G+ F I+L  
Sbjct: 395 APFALLILDLDRFKAVNDTLGHGMGDDLLRRVAQRLLRVVGAADVVARLGGDEFAILLAG 454

Query: 624 ENNSLKIADFAIAM------RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++    D A          + ++ P  +    + + ASIG A       T  ++L++A
Sbjct: 455 AGDAAGAGDLAAIQAAAERAIEILSRPFVIDGHILDIGASIGIALAPQDGDTPEQLLRSA 514

Query: 678 ELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LA+Y AK  G      F   +++    R  ++ DL  A+   E  L + P +       
Sbjct: 515 DLALYGAKEEGRGRFRMFEGTMNARMQARRSLELDLRRALARQEFELYFQPQVDARTGRF 574

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EALI+W HP+ G +S  EF+ +AEE  +I  +  ++L     +   W       P+ 
Sbjct: 575 DGAEALIRWHHPERGLVSPGEFIPLAEETGLIGPLGEWVLRTACAEARRWA-----TPLP 629

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++     D  L   ++ ++++T    SR+++  +E  +M +  R+  +L  LR +G
Sbjct: 630 VAVNLSPVQFRDPRLAATVRGILAETGLPGSRLEIEITEGTLMQDEHRTLAVLTELRGLG 689

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           I +++DDFGT  S LSYL   PFD +K + S +  +      +AI+R+I  + +++    
Sbjct: 690 IRISMDDFGTGYSSLSYLRRFPFDKIKIDQSFVRQTPQDRDSVAIVRAIAMLGRSLGIKT 749

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +  +     +   GCD +Q    + P+   SI +L + 
Sbjct: 750 TAEGVETDQQSVFIAGEGCDQLQGYLYSRPVPAESIAELFRA 791


>gi|83591951|ref|YP_425703.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodospirillum rubrum ATCC 11170]
 gi|83574865|gb|ABC21416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodospirillum rubrum ATCC 11170]
          Length = 1061

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 148/596 (24%), Positives = 262/596 (43%), Gaps = 9/596 (1%)

Query: 365  DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             +    L G    +++                 +   +   + S AV  S   V   D  
Sbjct: 467  SVALSRLFGHADALLLPTNPRASVITFVDITERKASEAALRKLSRAVEQSPASVIITDAR 526

Query: 425  RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                   P      G  S  + G     L   HI   +     +   +   R   + E  
Sbjct: 527  GTIEYVNPQFEKSTGYRSWEVIGANPRILKSGHIA--EATYAEMWKTLNEGRE-WRGELH 583

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             R  D   +W    + P+ +  G     + +  DIT +K++   ++  A  D LT +PNR
Sbjct: 584  NRRKDGTLYWEYASLSPVKDRRGRTTHLLAVKEDITARKETENRLIRQANFDELTDLPNR 643

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                 RL   +  +    ++   V+ ID+D +K +ND LG AVGD +L ++ +R+ E+ +
Sbjct: 644  SLCYSRLKEAIVEAEATASI-VGVLFIDLDHFKNVNDSLGHAVGDKLLTAVAQRLREVAR 702

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              D L+R  G+ F ++L   N S      A A+  ++A P ++  REI + ASIG   + 
Sbjct: 703  PGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAILTALAPPFSIDGREIYMAASIGITFFP 762

Query: 665  SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYL 722
                +++E+L+NA+ AMY AK  G N +  F        + R+ I+  L  A+ + EL +
Sbjct: 763  RDGRSAAELLRNADSAMYTAKESGRNAICFFSPEMEIRAAQRLAIEGALRQALAHEELRV 822

Query: 723  VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
             Y P++R  D   +G EAL++W  P  G +S +EF+ +AEE  +I  I  ++L++   + 
Sbjct: 823  AYQPLVRTSDARPIGAEALLRWTSPTLGEVSPTEFIKVAEETGLIVPIGAWVLDQAVAEA 882

Query: 783  ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
               R +       I +N++ +     +L   +   + +  +  + ++L  +ES+++    
Sbjct: 883  ARLRAE-GYGAFQIAVNVSVRQFRGGDLAGLVSDTLKRHDFPAAGLELELTESLLLDVTP 941

Query: 843  RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900
                 L  L  +G+ L+LDDFGT  S LSYL   PFD +K + S +   +      A+ R
Sbjct: 942  AITTTLQSLSALGVRLSLDDFGTGYSALSYLKTFPFDILKVDRSFIRDISSAPDSGALAR 1001

Query: 901  SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +II MA+ +    I + +  E          CD +Q       +    + ++L E+
Sbjct: 1002 AIIAMARGLGLATIVEGVETEEQCAFARAEDCDIMQGFLFGKAMTPADLRRMLDEK 1057



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 3/113 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +  + E         G+ ++  D             T+LG +   + G   + L + 
Sbjct: 321 RRALLREREDMRAITDTMGEGLYILDNEGLIAFVNRSAETMLGYSREDLLGAKAHSLFHS 380

Query: 457 HIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           H  D   +D     +   +  RR     +     ++     + +R  P++  +
Sbjct: 381 HDGDGRPQDADACAILRAMRERRHFTSSDEAFIRSNGTRFPVEVRCAPLTADD 433


>gi|163848521|ref|YP_001636565.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|163669810|gb|ABY36176.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
          Length = 1099

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 226/470 (48%), Gaps = 11/470 (2%)

Query: 489  DNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D        +   M   +  +LR I    + I +  +    +      D LTG+PNR   
Sbjct: 617  DGALAIFHTQTDWMPERDQSLLRVITDLLNLIADHTRLNAQLHYQVRYDPLTGLPNRHLL 676

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +R+   L  +    +    ++ ID+D +K++ND LG  +GD  L  +++     ++  D
Sbjct: 677  QERIELALRDARERRHT-VALLFIDLDGFKQVNDSLGHPIGDRFLKHVSQAFAACVRPQD 735

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             L R+ G+ F +++    ++      A  +  ++  P     +E+ +TASIG + +    
Sbjct: 736  TLGRMGGDEFLLLMPDLPDARLADIAAQRLLDALQTPYIHEGQELRLTASIGISLFPRDG 795

Query: 668  ITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            + S  +LKNA+ AM+ AK   R G        S     R+ ++  L  A+E  +L + Y 
Sbjct: 796  VDSVTLLKNADSAMHRAKEFKRSGFLHYRPEHSRRAHTRLALEVQLRRAIERQQLIVYYQ 855

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P   L+ E++  +EAL++W HP+ G I   EF+ IAEE  +I  I  ++L    R  ++W
Sbjct: 856  PQYDLVTEQVASVEALVRWHHPQRGLIPPGEFVPIAEESDLIIEIGSWVLREACRQAMAW 915

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                  P + I IN++++ LL  E    + A++  +    + ++L  +E V++ +P  + 
Sbjct: 916  HKA-GYPLLRISINVSARQLLRPEFVSEVAAILHSSGLPANWLELEITEGVMLDDPIYAA 974

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE------KRIAIL 899
              + +LR++GI + LDDFGT  S L+YL  +  D +K + + +    E         A+L
Sbjct: 975  RQIDQLRQLGIRIALDDFGTGYSSLAYLRQLRLDALKIDQAFVRAIDEQSNMVTNSRALL 1034

Query: 900  RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            R+II +A ++   +IA+ +        L  MGCD +Q    A PL  + +
Sbjct: 1035 RAIINLAHSLGLAVIAEGVETPEQRSALISMGCDILQGYLFAHPLPADEV 1084



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 42/222 (18%)

Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPIRNW 452
              ER  L    V+ + D V   D                  + + G A+  + G     
Sbjct: 380 QVEERLRLLESVVIHTNDAVLILDAEPLYSPGPFIRYANAACSRLTGYATHELIGRS--- 436

Query: 453 LPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           L  +H           L   +  R+  ++ E        +  W+ + + P+++  G    
Sbjct: 437 LRILHGPATDVMSLQTLWQAMEQRK-PIRLELLYYTRIGEPIWVDLSLSPVTDDYGQTTH 495

Query: 512 YIGIANDITEQKKS----LEGILCNAF---QDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +I +  DI+ QK +     +     A       +T +  R      L  +++        
Sbjct: 496 FIALHRDISAQKLAAFLEHDRSEILALLLQHSPVTTVLTR------LVELIERQRPHW-- 547

Query: 565 RPTVMVIDIDKYKKINDVLGIAVG-DDVLVSLTRRIGELLKF 605
              ++ + ID         G A    + L+    R+   ++ 
Sbjct: 548 ---LVWVGID---------GHATASSERLLDEAERLEARIRQ 577



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    +I+   DI            T+L     ++    R++   +H ++       L  
Sbjct: 23  LECIAEIIVILDIDHTIRFVNQSFITLLDYEPIALLN--RHFCELVHPDESTAVEQHLSQ 80

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +        R++  D  +    +R        G I   +    DIT
Sbjct: 81  LTVGQYQSQPLRVRLQHHDGSWRIFELRSCNRQQHPG-INGIVLSGYDIT 129



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                R  L    +    + V   D     V      A + G+    +     + L    
Sbjct: 258 IEAERRLHLQVHVLSQINEAVIVTDRSGAIVYLNDMAAYLYGVNPAEVLDQPLSRLFVAE 317

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                  +T+  + + +  G  + E   R  D +   + + I P+ +        + +  
Sbjct: 318 PL---PAQTVEWNPLSHTPG-WRGELLHRLPDGRTIIVDVSIDPLHHDELANGGTLIVVR 373

Query: 518 DITEQKKSLEGILCN 532
           DIT +K+  E +   
Sbjct: 374 DITSRKQVEERLRLL 388



 Score = 38.4 bits (88), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/144 (7%), Positives = 38/144 (26%), Gaps = 7/144 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGL-ASGSMHGPIR 450
                  + S        +  +  ++    +    +    P  A I G+     +     
Sbjct: 131 LLAADYALRSHHVCYRQLLELAPMMIIISSLPDGIIRYCNPAGARIFGVNTPEELLNRPI 190

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                    D           +   +      + + A D+    + ++   +  + G+  
Sbjct: 191 TEFL---AADEHAIMWQRRQALRNGQPLPPMLYHIYARDHVVRAVEVQGVLIEGA-GEPQ 246

Query: 511 RYIGIANDITEQKKSLEGILCNAF 534
             +    D+T++ ++   +     
Sbjct: 247 -VLSFGYDVTDRIEAERRLHLQVH 269


>gi|254718428|ref|ZP_05180239.1| diguanylate cyclase GGDEF domain-containing protein [Brucella sp.
           83/13]
 gi|306838854|ref|ZP_07471684.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|306406052|gb|EFM62301.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 703

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 245/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V     +   ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREVILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAIVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + +   A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L   +  D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLKQGSDCD--PFALFYLDIDHFKNVNDSISHQAGDQLLQEVVLRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFGQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|265983393|ref|ZP_06096128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella sp. 83/13]
 gi|264661985|gb|EEZ32246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella sp. 83/13]
          Length = 709

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 245/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V     +   ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREVILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAIVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + +   A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMAHIAMHDSLTGLPNRAYFAHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L   +  D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLKQGSDCD--PFALFYLDIDHFKNVNDSISHQAGDQLLQEVVLRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFGQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|226944938|ref|YP_002800011.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
 gi|226719865|gb|ACO79036.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
          Length = 834

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 146/769 (18%), Positives = 295/769 (38%), Gaps = 33/769 (4%)

Query: 210 YMVNRSSMLIPTFAMAWVVL---GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
           + ++ + +++        V        + +  +   +   S E  I        L++  +
Sbjct: 66  FRMHGNRVILMVSCTFLGVAISDFSHMLSYSGMPDFLGPNSPEKAIGFWLLARCLTALGV 125

Query: 267 IFLFMY---LHWNRWHAKV----GYITFSGIACIAILFCMSFYYPMVTA-------SIAR 312
           + +      L  +   A +      +    +  +  +  +   +P +          +  
Sbjct: 126 LIIACLPWRLEVSGRSAAIDPDRWRVLLVTLCAMVSIHLVLLLFPEILPRTYQEGVGLTE 185

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
                             +    R   +     L+    + + M          +  A  
Sbjct: 186 FKRGVEFSIIAIHAASIVLLSVRRRRDMGLEKGLLICSLLVMMMGEFFFTIYSDVTDAYN 245

Query: 373 GGLVLIVILIGFTVIQHVLATGYFS--QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
               +  I+    + + +      +  + +    +   + +    DI+ +  +    ++ 
Sbjct: 246 IFGHIYKIIAYLVLYRAIFVESILAPYKFLEDSRQHVEVLMGALPDIILEARLDGLLLSA 305

Query: 431 T-PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P    + G                +     D     + +     +G      R R   
Sbjct: 306 HVPTDGKLFG---EKKPKAGDYLQDRLPSQAMDCLTGAMRAAESGGQGT---GLRFRTGK 359

Query: 490 N-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
             +     +    ++  +     ++ +  D+TEQ ++   I   A  D LTG+PNR  F 
Sbjct: 360 GAEELVFDVSASLLAQRSDRSSHFVILIRDVTEQARNQSKIEQMAHFDALTGLPNRTLFN 419

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
                              ++ +D+D +K +ND LG  VGD +LV L  R+ ++L+  D+
Sbjct: 420 TCFDVEATRC-EKQRQPLALIFMDLDNFKNVNDSLGHKVGDALLVELAARLEKVLRPRDM 478

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           ++R  G+ F  +L  E +          +++S+ +PI + +  + V+AS+G   +     
Sbjct: 479 VSRQGGDEFMFLLP-EADVRTAEQMTECIKRSVEVPIQVGQYTLHVSASMGICMFPQDGR 537

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHP 726
               +  +A++AMY AK    +H   F           +  +  L  AV+  +L + Y P
Sbjct: 538 DLETLSSHADIAMYRAKQERRSHYAFFSEEMQACAARSLLLEGALREAVQWGQLDVYYQP 597

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
              +   ++ G EAL++W HP+ G IS +EF+ IAE    I  I   +L R  + +  W 
Sbjct: 598 QFDITGRKLEGAEALVRWRHPELGFISPAEFIPIAEITGQIIKIGDLVLRRATQQMRHWL 657

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D      + I +NI+     D  L E +   ++++   P  ++L  +ESV M +PE+   
Sbjct: 658 DAGLPGDMSIAVNISMAQFRDTALLEKIDTALAESQLPPWALELELTESVAMDDPEQVVD 717

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIP 904
           ++  LR  G+ L++DDFGT  S LSYL  +    +K + S +   +      +I+++II 
Sbjct: 718 IVRSLRSRGVKLSIDDFGTGYSSLSYLKKLRVHKLKIDRSFIQAISSAGSDRSIVQAIIG 777

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +AK+++   IA+ I  E   + L  +GCD  Q      PL  +  L  L
Sbjct: 778 LAKDLDMQTIAEGIETEEQRQLLEALGCDSGQGYLFCKPLPASEFLPAL 826


>gi|209523105|ref|ZP_03271661.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496256|gb|EDZ96555.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 619

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/446 (31%), Positives = 245/446 (54%), Gaps = 6/446 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I   +++   +L  A  D LTG+PNR  F+D+L   +  +  + + R  V+ +D D++
Sbjct: 171 REILHHQQTQSKLLHMASHDALTGLPNRVFFMDKLMQAISQTKQNPDYRFAVLFLDCDRF 230

Query: 577 KKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           K +ND LG   GD +L+SL RR+   L   P  LAR  G+ F I+L +  +   + + A 
Sbjct: 231 KVVNDSLGHLTGDRLLISLARRLQLTLKMSPTNLARFGGDEFTILLENIESPQAVTNIAK 290

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            ++K++  P  L ++++ + ASIG    TS      ++L++A++AMY AK +G      F
Sbjct: 291 RLQKALTWPFQLDDQDLFLEASIGIVIGTSEYTEPEQILRDADIAMYKAKSQGRGCYRVF 350

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +      R  ++ +L LA+EN++  L Y PII L D  ++G EAL++W HP+ G IS
Sbjct: 351 DGTMHDDAHRRFQLENELRLAIENNQFVLNYQPIIELADGSVIGFEALLRWHHPEHGIIS 410

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCE 812
            +EF+ IAE+  +I  I L++L++  + +  W+ +        + +N++ K      L E
Sbjct: 411 PAEFIPIAEDTGLIIPIGLWVLDQAVKQLNEWQKKGLITHGFRMSVNLSVKQFTQPYLIE 470

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ K  +    +KL  +E+ ++ NPE +R LL +L    I L+LDDFGT  S LSY
Sbjct: 471 EIDRILVKNNFQSCYLKLEITETAIVENPEAARQLLQQLTHRNIHLSLDDFGTGYSSLSY 530

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K + S +T  G+  + + I+ +II +A  ++ +++A+ I     + +L  +
Sbjct: 531 LHRFPVNTLKIDRSFITCIGTPNENLQIVDAIITLAHQLQISVVAEGIETAEQLAKLRSL 590

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD  Q  + + P+       LLK+R
Sbjct: 591 GCDQGQGYYFSKPVESIIAENLLKQR 616


>gi|27383267|ref|NP_774796.1| hypothetical protein bll8156 [Bradyrhizobium japonicum USDA 110]
 gi|27356441|dbj|BAC53421.1| bll8156 [Bradyrhizobium japonicum USDA 110]
          Length = 828

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/568 (24%), Positives = 243/568 (42%), Gaps = 30/568 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L   G+   +    +  +R+           G +                
Sbjct: 266 ELKQREASFRLLFDGNPVPMIVCALDDERILGVNDAAVAHYGYSRTEFEKL--------- 316

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512
              +       DS   +   R   E   R      AD     + I  R ++ +       
Sbjct: 317 ---KIRSLQAFDSEPPWTTDRSSDEQAARTWKHVKADGALIDLAIYSRELTYAE-RPAVL 372

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DITE+K++   +   A  D LTG+PNR     ++  +L  +      +  V+++ 
Sbjct: 373 LALM-DITERKRAEARLAFMAQHDGLTGLPNRNLLRQQVDEMLLHTRRSSE-KVAVLMLG 430

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +N+ LG AVGD +L  + +R+   L+  D LARL+ + F I+            
Sbjct: 431 LDNFKAVNETLGHAVGDKLLRGVAKRLRSTLREEDALARLNSDEFAIVQSGLTRPEDAVM 490

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + ++IA P  L    + + ASIG A   +    S ++LK+A++A+  AK       
Sbjct: 491 LAKRLLEAIADPYLLDGHSVVIGASIGIAMAPADGDDSEKLLKSADMALSRAKLDARGTF 550

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F     +    R  I+ +L  A++N  L   Y P+I L    I G EAL++W H + G
Sbjct: 551 AFFEAALHAKAQSRRKIEVELRDAIQNDVLRPYYQPLIDLSSGRITGFEALVRWPHAERG 610

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S +EF+ +AEE  +I  +   ML R   D  +W D      + + +N++        L
Sbjct: 611 MVSPAEFIPVAEETGLINPLGGLMLRRACLDAATWPD-----DVRVAVNLSPLQFRSGNL 665

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +   P R++L  +E++++    +    L  LR +G+ +++DDFGT  S L
Sbjct: 666 LSMVTDALKHSGLPPRRLELEITETLLLEKSAQVLATLHALRALGVRISMDDFGTGYSSL 725

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   PFD +K + S +      R   AI+RSI+ + K +  TI A+ +  E ++  L 
Sbjct: 726 SYLRSFPFDKIKIDQSFVRDLGANREAQAIIRSIVSLGKGLGVTITAEGVETEAELSCLR 785

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
             GCD  Q    +       I+ LL  +
Sbjct: 786 AEGCDEGQGFLFSKARPNIEIISLLAAQ 813



 Score = 42.2 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 37/157 (23%), Gaps = 21/157 (13%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++Q                ER   AV      +   D     V      + I    +   
Sbjct: 132 LVQSRAEAEAAIIEARKSHERLRQAVDLLPQGIVILDPEGRYVLWNKQYSEIYSKTADLF 191

Query: 446 -HGPIRNWLPYI------HINDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWM 495
             G        +      +     +    +   +        R +       +D +   +
Sbjct: 192 AEGARLEDTLRVGVARGDYPEAAGHEEEWIAQRLEKLYQPGARHEQTL----SDGRVILI 247

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R       +G     +G+  DITE K+        
Sbjct: 248 EER----RTDDG---GVVGLRVDITELKQREASFRLL 277


>gi|126668294|ref|ZP_01739253.1| Two-component response regulator [Marinobacter sp. ELB17]
 gi|126627211|gb|EAZ97849.1| Two-component response regulator [Marinobacter sp. ELB17]
          Length = 848

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 135/564 (23%), Positives = 242/564 (42%), Gaps = 19/564 (3%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGP--IR 450
                 +R  L    +  S + V   D        V   P    + G       G   + 
Sbjct: 287 ERKKAEDRMRLLERGIEASPNGVVMLDASVQDYPMVYVNPAFTEMSGYQPKEAIGKGYLV 346

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +            R+ L+         L Y       +    W  + I P+ +  G+  
Sbjct: 347 LFGKGTAPEALRLIRSALEHQEECEITLLSY-----RKNGSTFWKKLTITPVYDGRGECT 401

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            YI    D+T Q KS E +   A  D +TG+PN + F   L+ +   +         ++ 
Sbjct: 402 HYIAAQQDVTRQLKSEELLDYQARHDPVTGLPNHRLFEAHLSQVFVRA-RGKTSDMVLLY 460

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +N+ LG  VGD +L  +  R+  LL   D+L RL+ + F I+  +     ++
Sbjct: 461 VDLDDFKSLNESLGRQVGDLLLAVVADRLRNLLANDDVLTRLAADEFVIMRPALQAEAEV 520

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  M   +A   ++  + ++++ASIG AS   S     E+L NA LA+  AK +GGN
Sbjct: 521 KMLASQMLTCLAEAYDIKGQRLSISASIGIASDDGSVEQPKELLDNAALAVREAKRQGGN 580

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                  ++  +      ++ +L  A+E  +  + Y P++      +   EAL++W+HP 
Sbjct: 581 TFCWNHGAASTAGTEQVIMRCELMEAIEARQFVVYYQPLVEAKTGRLRSAEALVRWNHPA 640

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +    F+ +AE+   I AI  ++L +   D+     Q     + I +NI+       
Sbjct: 641 RGLLLPGAFISLAEQTGQIVAIGRWVLHQACMDMAQRWRQTGQ-AVSIAVNISPLQFRRP 699

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           E  + + A++  +   P  ++L  +E V++   +++  +L  LR +G+ + +DDFGT  S
Sbjct: 700 EFIDDVLAVLEASGLPPELLELEVTEGVLLSGIDKAISMLESLRDLGVQVAIDDFGTGFS 759

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P   VK + S +   T  R   AI++ +I MA ++   ++A+ I        
Sbjct: 760 SLSYLRQLPITKVKLDRSFIIDVTTDRGSAAIVQGVITMAHHLGLLVVAEGIETVEQQNY 819

Query: 927 LTRMGCDYIQDSHVASPLGFNSIL 950
           L    CD +Q    + P+      
Sbjct: 820 LAASDCDLLQGFLYSRPVPLGQFA 843



 Score = 68.4 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +    +          S  +R         D V++  +    V   P    I G    
Sbjct: 155 AGLAALAIEHHAERDRRVSSEQRYRSLFSQHPDCVFEIGLDGRFVDCNPAAEVISGYGRD 214

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G   ++   +     D     L   +        YE     A  +  ++ +   P+ 
Sbjct: 215 QLVG--EHFSKVLLPEFYDVANEAL--ILMAGGESHSYEIAGLNASGEAIFVDVINLPIV 270

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
             +GD+    GIA DI+E+KK+ + +   
Sbjct: 271 -VDGDVRGGYGIARDISERKKAEDRMRLL 298


>gi|91791445|ref|YP_561096.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713447|gb|ABE53373.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Shewanella denitrificans OS217]
          Length = 941

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 150/569 (26%), Positives = 263/569 (46%), Gaps = 27/569 (4%)

Query: 399 GIFSDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453
            + +   R    V    D  I +  DI  +    +P I  ILG  + +  G    +L   
Sbjct: 365 QLKNSENRYRGLVESLQDEYIFYQHDIQGEIQYVSPSITHILGHKALNFRGSYNKYLTSN 424

Query: 454 --PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                          ++   +        +E  +      +H   +  RPM N   + + 
Sbjct: 425 KNNLAIPE-------LILRCIKGEHVP-PFEIEIMDIKGAYHTFEVLERPMYNEQNECIG 476

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             GIA+DITE+K+    +   +  D LT + NR  F   L   +  +   +     ++ +
Sbjct: 477 CEGIAHDITERKQHQRKLYRLSHFDKLTNLANRYLFTLSLGQAITSAKALNQT-FALLFL 535

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+ ++K IND LG + GD +L     R+ E L   DILAR  G++F I+L  E++  +  
Sbjct: 536 DLTRFKIINDNLGHSAGDKLLQQAALRLTEQLNSQDILARFGGDKFCILLP-ESDEKQAE 594

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGN 690
             A+ + K +A P  + E+   +   IG + + ++      +LK A+ A+Y AK R  G 
Sbjct: 595 AVALTLIKILAQPFEVYEQSFILGCRIGISLFPTNGHDPETLLKQADAALYVAKKRPAGF 654

Query: 691 HVESFRVSSFRSDRVMIKEDLCLA------VENSELYLVYHPIIRLMDEEIVGLEALIQW 744
              S   + +   R+ +++ L LA       E+ EL  VY  + +L D  + G EALI+W
Sbjct: 655 AFCSEEQAVYNQRRLKLEQGLRLALSKSSFDESFELSAVYQSLNQLPDAGLAGFEALIRW 714

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS  EF+ IAEE  +I  ++ +ML ++ R +  W          + +N+++ D
Sbjct: 715 VHPELGPISPMEFIPIAEETGLIFELSRWMLTKVCRQLKEWHQLGFDFK-RVSVNLSALD 773

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L++  L E +  LI +    P  +K+  +E+ +M  PE+S   L +L   GI + +DDFG
Sbjct: 774 LININLAEEIINLIEEAGAEPRWLKIEITETALMAAPEQSISTLQQLVGNGIHVAIDDFG 833

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL  +P  ++K + S +     + +  A+++++I MA ++   + A+ +  + 
Sbjct: 834 TGYSSLAYLKSLPATSLKIDQSFIRNIMTSIEDQAVVKAVISMAHSLGKKVTAEGVETQE 893

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  L    CD  Q    A PL     +K
Sbjct: 894 QLDFLITRHCDLAQGYLFAKPLIAQDCVK 922


>gi|330505758|ref|YP_004382627.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328920044|gb|AEB60875.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 949

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 137/604 (22%), Positives = 274/604 (45%), Gaps = 10/604 (1%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +     + +      G  V          +          +         +     + +
Sbjct: 346 RVRHVDGHWVWVED-RGRAVERDAAGRVRRMLGTRRDVSARRQQEQQQRLAATVFEAASE 404

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++  D     +      +++ G +S  + G  R     I   +      ++   +    
Sbjct: 405 GIFILDPYYRVLAVNRAFSSVTGYSSEEVVG--RTVTSLIGSREMRRQYQMIRQELD-SS 461

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G  Q E        + +   +++  + +++G     +G   D+T ++++ E +   +  D
Sbjct: 462 GTWQGELIETRKSGELYPQWLQLNLVRDTSGRPSHIVGFFADLTARREAEERLRYLSHYD 521

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+ NR  F +RL      +         ++ ID+D++K +ND LG  V D +L  ++
Sbjct: 522 ELTGLANRSLFKERLHEASQRARQSGR-SIALVHIDLDRFKLLNDSLGHEVADQLLRQMS 580

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR+ + +   D +ARLSG+ F +IL +  +   +A  A  +   + +P+ +   E+ V+A
Sbjct: 581 RRLTQAVPEADCIARLSGDEFAVILDAYGSLSSLARVASRLLAKLRVPMTVGGHELVVSA 640

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLA 714
           S+G +         S ++  A +A+ HAKH GGN  + F  +       R+ ++  L  A
Sbjct: 641 SLGISLLPDYAREISALISQANMAVQHAKHLGGNTFQFFTDNLQACTLERLQLENQLRKA 700

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +L + Y P + L D+++   EAL++W HP+ G ++  EF+ +AEE  +I  I  F+
Sbjct: 701 IDEGQLEVFYQPKLNLADDQLNAAEALVRWRHPQQGMVAPGEFIGLAEETGLIAPIGEFV 760

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +  +    W+ Q     I + +NI+   L    L   ++ ++ +T  +P  ++L  +E
Sbjct: 761 LRQACQQACEWQRQGLA-KIRVSVNISVYQLRQGNLTSLVRQVLDETGLAPHYLELELTE 819

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893
           S ++ N +       +LR++G+ L +DDFGT  S LSYL   P   VK + + +   +  
Sbjct: 820 SELLDNVDSVIATFRQLRELGVKLAIDDFGTGYSSLSYLKRFPVHYVKIDQTFIRDLSPG 879

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +  AI R+II MA ++E  ++A+ +  +  +  L    CD IQ   ++ P+   +  +L
Sbjct: 880 GEDAAITRAIIAMAHSLELKVVAEGVETQAQMDFLKSQNCDEIQGFLISRPVEAGAFAEL 939

Query: 953 LKER 956
           L+ +
Sbjct: 940 LRAQ 943



 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/391 (14%), Positives = 129/391 (32%), Gaps = 53/391 (13%)

Query: 185 VNSFTLYRGIIIGVASLLAI---FLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
             +  L++G  +    +L +      + +    + +L        +++          ++
Sbjct: 19  ERTRLLFQGSRLPTLLMLLVGLACSLLLWSQQSAPLLAAWLGWVVLLVLLRLTQVNAFNE 78

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
            +         WR        +S +   F  +               G+   AIL     
Sbjct: 79  ALP-SRQAEPYWRRIFLFGAGASGLTLAFAVIVLVPADVFYQQALVYGLIAAAILSASVA 137

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
           Y   ++A ++      +       +  + ++           W L+ +      + +  +
Sbjct: 138 YAVSLSAFLSFALPCLVPSAAFLLLADNSLQR---------GWGLLGVILFLALLIVAWQ 188

Query: 362 LDNDIIQPALVGGLVLIVIL-------------------------------------IGF 384
           + N ++Q +L+     + ++                                     +  
Sbjct: 189 V-NRLVQRSLLQRFHNLALISNLEHAKQRAEGLNEELAREVEQRRRAERELRGAHGALEM 247

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V +  L     +  +     R +LA+  S   +WDWD+  D+V  +  +  + GL  G 
Sbjct: 248 RVAERTLELDEATHALGKSQARLALALEASELGLWDWDLDSDQVHHS-HLRELFGLEPGQ 306

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503
           +   +R+  P +H +D    R  L   +  R    Q E+RVR  D  + W+  R R +  
Sbjct: 307 VQVMLRDLTPRLHPDDLPRLRRALVQHLKGRSEDYQIEYRVRHVDGHWVWVEDRGRAVER 366

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           ++ G + R +G   D++ +++  +     A 
Sbjct: 367 DAAGRVRRMLGTRRDVSARRQQEQQQRLAAT 397


>gi|91974641|ref|YP_567300.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681097|gb|ABE37399.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 742

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 141/581 (24%), Positives = 241/581 (41%), Gaps = 38/581 (6%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +    +     +          G +S               
Sbjct: 180 ELKQREASFRLMFDSNPVPMIVCALRDERILAVNDAAVAHYGYSSVEFAQLTL------- 232

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRA-----ADNQFHWMIIRIRPMSNSNGDILRY 512
                      +S + +       E   R      AD     + I  R ++  NG+    
Sbjct: 233 -----RRLQAFESDLPWAGDHTDDERAARTWKHVKADGSLIDLAIYSRQLT-YNGEPAVL 286

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  DITE+K++   +      D LTG+PNR     RL  +L  +    + +  V+ I 
Sbjct: 287 LALM-DITERKRAEMRLAFMTHHDGLTGLPNRNLLRKRLDELLVHTRRASD-KIAVLFIG 344

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +K +ND LG A+GD +L  + RR+   L+  D+LARL+ + F ++        +I  
Sbjct: 345 IDHFKAVNDTLGHAIGDKLLRGVARRLRSTLREEDLLARLNSDEFAVVQTGIRRPQEITL 404

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +IA P  L    +   ASIG A        S ++L NA++A+  AK+      
Sbjct: 405 LAKRLLNAIAEPYLLDGHSVVAGASIGIAVAPVDGDDSEKLLMNADMALSRAKNDSRGSF 464

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   + +    R  I+ +L  A+ N  L   Y P++ L    I G EAL++W HP  G
Sbjct: 465 SFFEPGMDARAQARRKIETELRTALRNEVLRPYYQPLVELSSGRISGCEALVRWPHPDRG 524

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS +EF+ +AE+  +I AI   +L +   D   W        I + +N++        L
Sbjct: 525 MISPAEFIPVAEDTGLINAIGAQVLRQACLDASRWP-----GDIRVAVNLSPLQFRVGNL 579

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +      P R+++  +E++++    +    L  LR +G+ +++DDFGT  S L
Sbjct: 580 MATVMDALKYAGLPPHRLEIEITETLLLEKSSQVIATLHALRALGVRISMDDFGTGYSSL 639

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   PFD +K + S +       +  AI+R+II +   +  TI A+ +  E ++  L 
Sbjct: 640 SYLRSFPFDKIKIDQSFVRDLCNNREAQAIVRAIISLGMGLGVTITAEGVETEAELSWLR 699

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL--------KERFPLVK 961
             GC   Q    ++      I  LL         ++FP  +
Sbjct: 700 AEGCHEAQGFLFSAARPNEEIKGLLDLQQSAAPDQQFPAAR 740



 Score = 40.3 bits (93), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 17/155 (10%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             +   A            ER   A+      +   D     +      A I   AS  M
Sbjct: 46  AAERERAVAQALAEARKSHERLREAIDLVPQGIVFLDSEGRYILWNKRYAEIY-KASADM 104

Query: 446 HGPIRNWLPYI--------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             P   +   +        +          +   +           ++  AD +   +  
Sbjct: 105 FKPGARFQDTLRVGIARGDYPEAIGREDDWIAERMQRMFHPSHSHEQIL-ADGRCIQIEE 163

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  S+G     IG+  DITE K+        
Sbjct: 164 CTT----SDG---GVIGLRVDITELKQREASFRLM 191


>gi|170750741|ref|YP_001757001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657263|gb|ACB26318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 829

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 144/635 (22%), Positives = 255/635 (40%), Gaps = 33/635 (5%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++      L   A     I  +   +    R   ++ +P   GG   + + +    + 
Sbjct: 209 AALQWQRVGQLFPGAITARTIATLAAMVERGGRSAFELSRPRSDGGT--LYLKVEAGCVG 266

Query: 389 HVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDW-DIVRDRVTTTPDIATILGLASGSMH 446
            +L+      G I +      L    +   +W   D     +          G +     
Sbjct: 267 DLLSVTMTDVGDIKAREASFRLLFENNPVPMWVVADARDRFLAVNDAAVAHYGYSREQFL 326

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIRPMSN 504
                        D                G L      R AD       +  R  P   
Sbjct: 327 SRA--------PADLAIAAEEATELGLPAAGSLH-----RRADGSAIEVSLFQRAMPFEG 373

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                   +  A D+TE++++   I   A  D LTG+PNR  F DRL   +   A D   
Sbjct: 374 RQ----AVLEAAIDMTERRRAEARIAHMAHHDALTGLPNRVLFRDRLGEAIARHARDGE- 428

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +D+DK+K +ND LG  VGD +L     RI   L+  D++ARL G+ F I++   
Sbjct: 429 EAVLLCLDLDKFKIVNDTLGHPVGDALLREAAERIAGCLRKDDLVARLGGDEFAILVRGM 488

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +           +   +  P  L  ++  +  SIG A           ++KNA+LA+Y A
Sbjct: 489 DLPALADGLIARVIAELGRPFRLEGQDCHIGTSIGVACLPRDGTDPETLMKNADLALYRA 548

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  GG+    F        +   + +  L  A    +  LVY P++    + I+  EAL+
Sbjct: 549 KAEGGSTFRCFEPEMDAWVQARRRRENELREAFARGQFSLVYQPLMDARSDRILAFEALL 608

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S +EF+ +AEE  +I  I  ++++    +  +W +      I + +N++ 
Sbjct: 609 RWHHPEHGPVSPAEFVPLAEETGLIVPIGAWVMQTAFAEAATWPET-----IRLAVNLSP 663

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               +  L E ++  ++ T   P R++L  +ESV++ +   +   L  LR +GI + +DD
Sbjct: 664 IQFRNRTLVETVRGALAATGLDPRRLELEITESVLLADSAANLATLHALRDMGIRIAMDD 723

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   PFD +K + S ++   E     AI+R++  +  ++     A+ +  
Sbjct: 724 FGTGYSSLSYLRSFPFDKIKLDRSFVSQVGENTHCTAIVRAVASLGTSLGIATTAEGVET 783

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +  L   G D +Q    +  +      +L+  
Sbjct: 784 PEQLAMLRAEGYDEVQGFLFSRAVPGPEARRLIDR 818


>gi|289672478|ref|ZP_06493368.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 561

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 151/570 (26%), Positives = 271/570 (47%), Gaps = 13/570 (2%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           +   +       AV  S +     +         P    I   +S  + G     L  + 
Sbjct: 1   RAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSELP 57

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI  
Sbjct: 58  ALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIYE 117

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +K
Sbjct: 118 DITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNFK 174

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +IND LG   GD +L+SL RR+   L   D+LAR + N F +++ +  +       A  +
Sbjct: 175 RINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQV 233

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F  
Sbjct: 234 LATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFTE 293

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I   
Sbjct: 294 ALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRPD 353

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   + 
Sbjct: 354 QFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSIA 412

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL  
Sbjct: 413 AILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLKK 472

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  CD
Sbjct: 473 FPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRCD 532

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             Q      P+    +++ LK R+P   + 
Sbjct: 533 VGQGYLFDRPIPGEELIEKLK-RYPRRPSA 561


>gi|254496498|ref|ZP_05109372.1| hypothetical protein LDG_1047 [Legionella drancourtii LLAP12]
 gi|254354281|gb|EET12942.1| hypothetical protein LDG_1047 [Legionella drancourtii LLAP12]
          Length = 505

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 129/454 (28%), Positives = 238/454 (52%), Gaps = 6/454 (1%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  I   I    DIT++    + +   A  D+LTG+PNR   LDRL  +LD +    N  
Sbjct: 51  DKKITGRIWSFRDITQRVILEKQLKYQATHDSLTGLPNRVLMLDRLGHVLDKAKR-QNTL 109

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+  D+D++K IND +G   GD++L ++ +R+  +L+  D LARL G+ F +I+ +  
Sbjct: 110 FAVIFFDLDRFKLINDSIGHDTGDELLKTVAKRLEFMLRGTDTLARLGGDEFIVIVDNIK 169

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           N       A  + +S      +  + ++V +S G + +     T  E+L+NA+ AMY AK
Sbjct: 170 NEFDAGTVATHLLESFNSNFEIAGQSLSVCSSAGISIFPRDGKTIGELLRNADAAMYQAK 229

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           + GGN  + +     +   ++ +++ +L  AV N+E  + Y P   +  ++I  +EALI+
Sbjct: 230 NSGGNQFQFYTAELGTQIKEKFVLENELHDAVLNNEFMIYYQPQFDITTQKISSVEALIR 289

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HPK G +   +F+  AEE  +I  I  + L+        W+D     P+ + +NI+ K
Sbjct: 290 WNHPKRGILLPIDFIPAAEETGLIIPIGEWTLKTACEQNKKWQDA-GFLPMRVAVNISLK 348

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            +   +  + ++ ++  T  SP+ ++L  +E+V++   E +   L  L  +GI +TLDDF
Sbjct: 349 QIKQFDFVQKIKGILDSTGLSPNWLELEITENVLLNAIELALSSLPELYAMGIHITLDDF 408

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S ++YL  IP D +K + S ++          I++SII +AK +   I+A+ +  +
Sbjct: 409 GTGTSSINYLRKIPLDRLKIDQSFISNINLNTSDEVIIQSIISLAKKLNLKIVAEGVETQ 468

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ L    C+ +Q  + + P+  + +  +L+ 
Sbjct: 469 KQLEFLQSNHCEEVQGFYFSKPVAPSELELILQR 502


>gi|114776847|ref|ZP_01451890.1| hypothetical protein SPV1_11546 [Mariprofundus ferrooxydans PV-1]
 gi|114552933|gb|EAU55364.1| hypothetical protein SPV1_11546 [Mariprofundus ferrooxydans PV-1]
          Length = 529

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 129/543 (23%), Positives = 247/543 (45%), Gaps = 21/543 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +   P   T+ G ++  + G + + L  +     +      ++          
Sbjct: 3   TDHAHRIIRVNPAFTTLTGYSAERITGSLASELYLL-PEGMEREVLKKEAVWSGNVS--- 58

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
               ++  + +    +      +  +G + RYI I        K  +        D  T 
Sbjct: 59  ----IKKENGEILQGLQTTVSTTVEDGGLARYIHII-------KPADAATQEGSYDQNTN 107

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +P+R  F   L    + +    + +  V+ IDID +K IND  G   G+ +L  +  R  
Sbjct: 108 LPDRNMFQHILAQEQENAKR-KHFQLGVLYIDIDHFKVINDSFGYLKGNLLLGQVAERFK 166

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LL+  D++A L GNRF ++L    +        + + +++     +   E+ +T S G 
Sbjct: 167 ALLRGNDLIASLGGNRFVVLLTGLAHPEDATIVTLKLMQALESGFCIDNHEVVMTISTGI 226

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENS 718
           A +      S  +L++AE +MY  K  GGN+ + F+ S+     +R+ ++ ++  A+E  
Sbjct: 227 AIFPGDGDDSEALLQSAEQSMYSVKADGGNNYQFFKASTQSSAINRLNMESEMRKAIERG 286

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  L Y P I      +VG+EALI+W HP+ G I    F+ +AEE  MI  I  +++   
Sbjct: 287 EFVLHYQPQINATSGHVVGMEALIRWQHPERGMIPPYHFISVAEETGMIVPIGEWVMYEA 346

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R   +W D      + + +N++++   D +L + ++  + ++  +P+ ++L  +ESV+M
Sbjct: 347 CRQNKAWHDAGLAE-LKVAVNLSARQFSDRKLLDKVRHALKQSGLNPAFLELEITESVIM 405

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
            + E +  LL  +  +G+SL +DDFGT  S L+YL   P D +K + S +    S+E   
Sbjct: 406 KDIEATIALLEEIASMGLSLAIDDFGTGYSSLNYLKRFPIDKLKIDKSFIDDVISSEDDG 465

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I+ +II ++ N++  +I + +        L    C+ IQ  + + PL  +     ++ R
Sbjct: 466 KIVEAIIGLSHNLKLNVICEGVEDAEQFAWLQERQCNEIQGYYFSKPLPADEFEAFVRSR 525

Query: 957 FPL 959
             +
Sbjct: 526 NAI 528


>gi|291571153|dbj|BAI93425.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 619

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 248/446 (55%), Gaps = 6/446 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I   +++   +L  A  D LTG+PNR  F+D+L   +  +  + + R  V+ +D D++
Sbjct: 171 REILHHQQTQSKLLHMASHDALTGLPNRVFFMDKLMQAISETKQNPDYRFAVLFLDCDRF 230

Query: 577 KKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           K +ND LG   GD +L+SL RR+   L   P  LAR  G+ F I+L + +++  +   A 
Sbjct: 231 KVVNDSLGHLTGDRLLISLARRLQLTLKMSPTNLARFGGDEFTILLENIHSTQAVTVIAE 290

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            ++K++  P  L E+++ + ASIG    TS      ++L++A++AMY AK +G      F
Sbjct: 291 RLQKALTWPFQLDEQDLFLEASIGIVIGTSEYTEPEQVLRDADIAMYKAKSQGRGCYRFF 350

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              + +    R  ++ DL LA+EN+   L Y PII L D  ++G EAL++W HP+ G IS
Sbjct: 351 DGTMHNDAHRRFQLENDLRLAIENNHFLLNYQPIIELQDGSVMGFEALLRWHHPEHGIIS 410

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCE 812
            +EF+ IAE+  +I  I L++L++  + +  W+ +  + P   + +N++ K      L E
Sbjct: 411 PAEFIPIAEDTGLIIPIGLWVLDQAVKQLNLWQKKGLITPQFRMSVNLSVKQFTQPYLIE 470

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ K  +  S +KL  +E+ ++ NPE +R LL +L    I L+LDDFGT  S LSY
Sbjct: 471 EIDRILVKNNFQSSYLKLEITETAIVENPEAARQLLQQLTHRNIHLSLDDFGTGYSSLSY 530

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K + S +T  G+  + + I+ +II +A  ++  ++A+ I     + +L  +
Sbjct: 531 LHRFPVNTLKIDRSFITCIGTPNENLQIVDAIITLAHQLKINVVAEGIETAEQLAKLRSL 590

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD  Q  + + P+       LLK+R
Sbjct: 591 GCDQGQGYYFSKPVESMMAEDLLKQR 616


>gi|330504863|ref|YP_004381732.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328919149|gb|AEB59980.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 715

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 141/647 (21%), Positives = 276/647 (42%), Gaps = 21/647 (3%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +   M+G  R  L      +IF+  I        R  +      ++      V+      
Sbjct: 76  VARLMRGNPRTRLTP----IIFVSAIAQTHDAVLRGYSSGAVDFVLKPFDPSVLRHKIHS 131

Query: 387 IQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           +          Q +    ER        +  + + +             P +A +L    
Sbjct: 132 LLEHEHNRCELQALSQQLERARAFNASVLANAAEGILVVGEDGRIQFANPAMAQMLDGEV 191

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G + G           ++R    +              +E  +R        + +   P+
Sbjct: 192 GDLEGVELLSFLKNPASERGWLESEFYLHFKREATYRVHEAMMRTFKGGCLPVALSCSPL 251

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                     + IA D++  +     +   A  D+LTG+ NR+ F   L + L       
Sbjct: 252 PLQQ---RAMVVIALDMSVVRNLHAQLESQAVTDSLTGLLNRRGFHQALESALARIERSG 308

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             R  V+ +D+D +K+IND LG  VGD +L  +  ++   L+  D LAR+ G+ F  +L 
Sbjct: 309 Q-RVAVLYLDLDGFKRINDSLGHDVGDQLLRRVGEQLKACLRPYDSLARIGGDEFTALLD 367

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +    A  A  + + +++   L   + T+ AS+G A +     +   +L++A++AMY
Sbjct: 368 NLGHPEDAAKVAEKLIELVSVRHTLDGVDFTLGASVGIACFPECGQSVEGLLRSADMAMY 427

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G      F          R+M++E L  A+EN +  LVY P  +L    + G EA
Sbjct: 428 EAKRAGRQQYRFFSPEMNGRARSRLMLEESLRHAIENDDFVLVYQPQFQLESGRLRGFEA 487

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W H   G ++ + F+ + EE  +I  +  ++    AR +  ++ Q     + + +N+
Sbjct: 488 LLRWQHRVAGTVAPNVFIPLLEETRLINRLGEWIFREGARQLADFKQQFG-EDMVLSLNV 546

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +       +L   +Q ++      PS++++  +ES +M + E ++  L  LR++G+ + +
Sbjct: 547 SPVQFGMPQLVTDLQRVLDAHGLKPSQLEVEVTESALMQDLELTQAQLRHLRELGVKIAI 606

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL +   DT+K +   ++    + +  A++ +II + +++   +IA+ +
Sbjct: 607 DDFGTGYSSLAYLRHFELDTLKIDRLFISNMLDSPRDAAVVSTIIDLGRHLGLEVIAEGV 666

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE----RFPLVK 961
             +   K LTR  C+ +Q   VA  +   S +++  +    R PL +
Sbjct: 667 ETQEQRKWLTRHNCNIMQGFLVAPGIPAGSAMQVPAQLDWNRLPLPR 713


>gi|160898227|ref|YP_001563809.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160363811|gb|ABX35424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 828

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/574 (23%), Positives = 265/574 (46%), Gaps = 11/574 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                      +  E  +     S D ++  D   D   T P    +LG           
Sbjct: 236 FRDITAEAQTQAGLELAARVFESSLDGIFIADGYMDVARTNPACERLLGGMPVQGRTVES 295

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +        + +    L     ++ G  + +  +R A      + +   P+ N+ GD++
Sbjct: 296 LFEAS---EGQADTLGDLARIQWHQGGFWEGDLWLRQAGGARCAVRLSWVPLRNAQGDVV 352

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           + IG   D+T+Q+ + + I   A+ D LTG+PNR +  +R+   ++ +A       +++ 
Sbjct: 353 QSIGFMRDLTQQRVAQQRIEQLAYSDALTGLPNRLNLTERVDAAIE-AARAGGTVFSILF 411

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D++K IND LG   GD VL  + +R+ + ++  DIL RL G+ F + L   N +   
Sbjct: 412 IDLDRFKIINDSLGHQFGDRVLKLVAQRLSDCMRPVDILCRLGGDEFVLYLQGCN-AELA 470

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  + + +  P  L     +V  SIG A + +  +T  E+++ A+ AMY  K RG  
Sbjct: 471 ASVARRILQEMERPFLLDGLGFSVQCSIGVAQYPADGLTLDELIRQADTAMYRVKERGRG 530

Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           H   ++         R+ ++  +  A+E+  + + + P + +  + IV  EAL++W  P+
Sbjct: 531 HFSFYQPQMSAGLLSRMKLEHAMRQALEHGRMAVYFQPQVHIDSDRIVAAEALLRWTDPE 590

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           +G +S   F+ +AEE   I  +  +++E+  ++   W+ Q    PI + +N+++ +   +
Sbjct: 591 FGVVSPGVFIPLAEESGYIVTLGAWVMEQAVQEAARWQQQG--MPIKVSVNVSALEFRQS 648

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              E +  L+     +P  ++L  +ES+++ + +   L + ++  +G+ + +DDFGT  S
Sbjct: 649 GFVERVTELLRSYGLTPQLLELELTESILLQDAQDMALRVCQIADLGVGMVIDDFGTGYS 708

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL  +P   +K + S + G    E   AI+ +II +   +   I+A+ +     +  
Sbjct: 709 NLAYLKKLPISKIKIDQSFVRGLPSDEGDQAIVGAIISLGLALGVEIVAEGVETHEQLTA 768

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           + RM   Y Q    A  L      + L+ +   +
Sbjct: 769 IHRMQGHYFQGFLCAPGLPREQFGECLQAQRAGI 802



 Score = 42.6 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 8/156 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    +              S        +  + D +   D            AT+ G+ 
Sbjct: 104 VLLVSMLDRREQALHEAEFESLLGELRATLESAADAILVCDPDGRIRAFNHRFATLWGIP 163

Query: 442 SGSMHGPIR-NWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +        L ++     D +++   L                +R  D +   +  R
Sbjct: 164 EALLVRRNDVAILDHLASQVRDAESYARQLKLLSAQPLMEAADVLDLR--DGRI--LERR 219

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             P     G  +  I    DIT + ++  G+   A 
Sbjct: 220 AVPQL-RRGLPMGRIFSFRDITAEAQTQAGLELAAR 254


>gi|222526455|ref|YP_002570926.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Chloroflexus sp. Y-400-fl]
 gi|222450334|gb|ACM54600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Chloroflexus sp. Y-400-fl]
          Length = 1099

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 226/470 (48%), Gaps = 11/470 (2%)

Query: 489  DNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D        +   M   +  +LR I    + I +  +    +      D LTG+PNR   
Sbjct: 617  DGALAIFHTQTDWMPERDQSLLRVITDLLNLIADHTRLNAQLHYQVRYDPLTGLPNRHLL 676

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +R+   L  +    +    ++ ID+D +K++ND LG  +GD  L  +++     ++  D
Sbjct: 677  QERIELALRDARERRHT-VALLFIDLDGFKQVNDSLGHPIGDRFLKHVSQAFAACVRPQD 735

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             L R+ G+ F +++    ++      A  +  ++  P     +E+ +TASIG + +    
Sbjct: 736  TLGRMGGDEFLLLMPDLPDARLADIAAQRLLDALQTPYIHEGQELRLTASIGISLFPRDG 795

Query: 668  ITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            + S  +LKNA+ AM+ AK   R G        S     R+ ++  L  A+E  +L + Y 
Sbjct: 796  VDSVTLLKNADSAMHRAKEFKRSGFLHYRPEHSRRAHTRLALEVQLRRAIERQQLIVYYQ 855

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P   L+ E++  +EAL++W HP+ G I   EF+ IAEE  +I  I  ++L    R  ++W
Sbjct: 856  PQYDLVTEQVASVEALVRWHHPQRGLIPPGEFVPIAEESDLIIEIGSWVLREACRQAMAW 915

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                  P + I IN++++ LL  E    + A++  +    + ++L  +E V++ +P  + 
Sbjct: 916  HKA-GYPLLRISINVSARQLLRPEFVSEVAAILHSSGLPANWLELEITEGVMLDDPIYAA 974

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE------KRIAIL 899
              + +LR++GI + LDDFGT  S L+YL  +  D +K + + +    E         A+L
Sbjct: 975  RQIDQLRQLGIRIALDDFGTGYSSLAYLRQLRLDALKIDQAFVRAIDEQSNMVTNSRALL 1034

Query: 900  RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            R+II +A ++   +IA+ +        L  MGCD +Q    A PL  + +
Sbjct: 1035 RAIINLAHSLGLAVIAEGVETPEQRSALISMGCDILQGYLFAHPLPADEV 1084



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 42/222 (18%)

Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPIRNW 452
              ER  L    V+ + D V   D                  + + G A+  + G     
Sbjct: 380 QVEERLRLLESVVIHTNDAVLILDAEPLYSPGPFIRYANAACSRLTGYATHELIGRS--- 436

Query: 453 LPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           L  +H           L   +  R+  ++ E        +  W+ + + P+++  G    
Sbjct: 437 LRILHGPATDVMSLQTLWQAMEQRK-PIRLELLYYTRIGEPIWVDLSLSPVTDDYGQTTH 495

Query: 512 YIGIANDITEQKKS----LEGILCNAF---QDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +I +  DI+ QK +     +     A       +T +  R      L  +++        
Sbjct: 496 FIALHRDISAQKLAAFLEHDRSEILALLLQHSPVTTVLTR------LVELIERQRPHW-- 547

Query: 565 RPTVMVIDIDKYKKINDVLGIAVG-DDVLVSLTRRIGELLKF 605
              ++ + ID         G A    + L+    R+   ++ 
Sbjct: 548 ---LVWVGID---------GHATASSERLLDEAERLEARIRQ 577



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    +I+   DI            T+L     ++    R++   +H ++       L  
Sbjct: 23  LECIAEIIVILDIDHTIRFVNQSFITLLDYEPIALLN--RHFCELVHPDESTAVEQHLSQ 80

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +        R++  D  +    +R        G I   +    DIT
Sbjct: 81  LTVGQYQSQPLRVRLQHHDGSWRIFELRSCNRQQHPG-INGIVLSGYDIT 129



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 7/135 (5%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                R  L    +    + V   D     V      A + G+    +     + L    
Sbjct: 258 IEAERRLHLQVHVLSQINEAVIVTDRSGAIVYLNDMAAYLYGVNPAEVLDQPLSRLFVAE 317

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                  +T+  + + +  G  + E   R  D +   + + I P+ +        + +  
Sbjct: 318 PL---PAQTVEWNPLSHTPG-WRGELLHRLPDGRTIIVDVSIDPLHHDELANGGTLIVVR 373

Query: 518 DITEQKKSLEGILCN 532
           DIT +K+  E +   
Sbjct: 374 DITSRKQVEERLRLL 388



 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/144 (8%), Positives = 39/144 (27%), Gaps = 7/144 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGL-ASGSMHGPIR 450
                  + S   R    +  +  ++    +    +    P  A I G+     +     
Sbjct: 131 LLAADYALRSHHVRYRQLLELAPMMIIISSLPDGIIRYCNPAGARIFGVNTPEELLNRPI 190

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                    D           +   +      + + A D+    + ++   +  + G+  
Sbjct: 191 TEFL---AADEHAIMWQRRQALRNGQPLPPMLYHIYARDHVVRAVEVQGVLIEGA-GEPQ 246

Query: 511 RYIGIANDITEQKKSLEGILCNAF 534
             +    D+T++ ++   +     
Sbjct: 247 -VLSFGYDVTDRIEAERRLHLQVH 269


>gi|222054280|ref|YP_002536642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
 gi|221563569|gb|ACM19541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. FRC-32]
          Length = 934

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 147/652 (22%), Positives = 277/652 (42%), Gaps = 17/652 (2%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
           A+  +A    +     I     G     + +           G     +     +++   
Sbjct: 283 AKFYVALASFFGIILSILVVWLGMRYLTMPLLNMARHIRSMHGEPGKTS---PVEVLSED 339

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
            +G L L    +   V +   A         ++  +    V   GD +   D     +  
Sbjct: 340 EIGELGLAFNDLLDRVGKEQEALREAVLTAKNERAKSEAIVAALGDGMSMVDTDFKVLYQ 399

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                T+ G   G   G             +D   +     + +  G +    RV   D 
Sbjct: 400 NKVHQTLAG---GEFIGSYCYQAF----EGKDAPCSGCPVAMSFADGLVHTAERVVERDG 452

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +  ++ I   P+ + +G I   I +  +I+ +K+    I   AF D LTG+PNR+ F +R
Sbjct: 453 EKLYLEITASPLFDYDGRINAGIEVVRNISRRKQMESAIEQMAFHDALTGLPNRRLFNER 512

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDIL 609
           L   +  +  +D     VM +D+D +K IND LG  +GD++L  +  R+    +   D +
Sbjct: 513 LAQAIAYAQRNDQF-LAVMFLDLDHFKDINDSLGHTIGDELLKEVATRLKRCGRRAEDTI 571

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           AR  G+ F + L    +       A  + + +  P  L   E+ V+ SIG + +      
Sbjct: 572 ARQGGDEFLLFLSEIKDKEDAVHLAALLLQEMTAPFILSGYELFVSVSIGISIYPHDGRD 631

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPI 727
              +  NA++AMY AK +G N V  +  S    +R  +  +  L  A+  ++L L Y P 
Sbjct: 632 VETLASNADIAMYRAKQQGRNSVNLYNHSMGEKNRQRLTVETSLRRAIGKNQLVLHYQPQ 691

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + +   +I+G+EAL++W+HP+ G +  + F+  AEE  +I  +  ++LE  A    +W+D
Sbjct: 692 VSVHSGKIIGMEALVRWNHPEQGLLLPTSFIPQAEETGLILDLGEWVLETAAAQNKAWQD 751

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
               PP+ I +N + + L   +  E +   + +T      ++L   E+V+      +   
Sbjct: 752 A-GYPPVKISVNYSQRQLRQQDFVEKLLKSLKQTGLEARWLELEIREAVMAEGIMDNLQA 810

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           L  LR +G+ + +D+FG   S L  LG  P D +K + S ++  +    + AI  ++  +
Sbjct: 811 LAALRDVGVRIAIDNFGAGYSCLKQLGDFPLDALKIDLSFVSQISSSEVKKAIAGTVASL 870

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           AK +  ++IA+ +  +  ++ L  +G   +Q ++ ++PL       LL    
Sbjct: 871 AKGLHLSVIAQGVETKEQMQLLCSLGYGEMQGNYFSNPLPAEEAGLLLSREN 922


>gi|115522120|ref|YP_779031.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115516067|gb|ABJ04051.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 750

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 141/566 (24%), Positives = 245/566 (43%), Gaps = 26/566 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +    +  +R+           G +                
Sbjct: 187 ELKQREASFRLLFDANPVPMIVCALDSERIIDVNDAAVKHYGYSPADFRSLTIG------ 240

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             D   F    D          +   R      AD     + +  R ++ + G     + 
Sbjct: 241 --DLQAFEA--DRPWTGDHSNDECTARTWKHVRADGTLIDLAVYSRQLTYA-GQPAALLA 295

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DITE+K++   +      D+LTG+PNR S   +L  +L  S      +  +  + ID
Sbjct: 296 LM-DITERKRAEMRLAFMTQHDSLTGLPNRNSLRKKLDQMLVSSRRSTE-KIALHFLGID 353

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND LG AVGD +L S++RR+   L+  D++ RL+ + F I+     N   +   A
Sbjct: 354 NFKAVNDSLGHAVGDKLLRSISRRLRSTLREEDVIGRLNSDEFAILQSGVQNPEDVVLLA 413

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  +I  P  L    + V+AS+G A   +    S ++  +A++A+  AK+        
Sbjct: 414 KRLLHAIGEPFILEGHSLVVSASMGIAMVPTDGDDSEKLFMSADMALSKAKNEARGSYSF 473

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   + +    R  I+ +L  A+++  L   Y P+I L    I G EAL++W HP+ G +
Sbjct: 474 FEPGMDARAQTRRKIEFELRQAIQHDVLRPHYQPLIGLNSGRITGCEALVRWPHPERGLV 533

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ +AEE  +I  +   +L R   D  +W D      + I IN++        L  
Sbjct: 534 SPAEFIPVAEETGLINPLGTQVLRRACLDAAAWPD-----DVRIAINLSPLQFRVGNLLS 588

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   + ++  SP R++L  +E++++    +    L  LR +G  +++DDFGT  S LSY
Sbjct: 589 VVMDALKQSGLSPKRLELEITETLLLEKSSQVIATLHALRALGARISMDDFGTGYSSLSY 648

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K + S + G  + R   AI+RSII +   +  TI A+ +  E ++  L   
Sbjct: 649 LRSFPFDKIKIDQSFVRGVCDNRELQAIVRSIISLGMGLGVTITAEGVETEAELNWLRAE 708

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GC   Q    +       I+ LL  +
Sbjct: 709 GCHEAQGFLFSPARPDAEIVDLLAAQ 734



 Score = 47.6 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 17/155 (10%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           V++   A            ER   A+      +   D     +      A I   ++   
Sbjct: 53  VVRKRAAVDAAKAEARKSHERLREAIEVLPQGIVFLDAEGRYILWNKKYAEIYSRSADLF 112

Query: 446 HGPIR---NWLPYIHINDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHWMII 497
              +R        +   D        ++++  R   L     + E R+  +D ++  +  
Sbjct: 113 KPGVRMADTLRVGVERGDYPEALGREEAWIAERIAELFHPGKRLEQRI--SDGRWIQIEE 170

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           R+     ++G     IG+  DITE K+        
Sbjct: 171 RMT----ADG---GIIGLRIDITELKQREASFRLL 198


>gi|332529483|ref|ZP_08405441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hylemonella gracilis ATCC 19624]
 gi|332041003|gb|EGI77371.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hylemonella gracilis ATCC 19624]
          Length = 986

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 137/553 (24%), Positives = 237/553 (42%), Gaps = 16/553 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472
           S D +   D              I G       G   +     +H      F   L + +
Sbjct: 426 SHDGMMIADANGVIERVNSAFTRISGYTPEEAIGKTPKLLQSGLHE---PAFYQALWTAL 482

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R G    E   R      +   + I  ++++ G  LRYIG   DIT ++ +       
Sbjct: 483 K-REGHWHGEVVNRHRQGHLYTARLTITEVTDAGGRTLRYIGNLQDITAERDARALAERL 541

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D LT +PNR    DR+ + L     +      VM+ID+D ++K+ND LG  +GD +L
Sbjct: 542 RLFDPLTNLPNRLQIEDRMRSHLLDQDLESPTADAVMMIDLDLFQKVNDSLGHVIGDQLL 601

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGII-----LISENNSLKIADFAIAMRKSIAMPINL 647
           + + RRI  + +  D + R SG+ F I+        +  + +    A ++R++I  P+ L
Sbjct: 602 IEMARRISLIAREGDTVGRFSGDSFVIVAQHLGPDRQETAQRAQALAESVRRTIEAPVML 661

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
               +  TAS+G    +  +     +L+ AELAMY  K  G N V  F  +         
Sbjct: 662 DGHRLVCTASVGITLSSGPRSDPGTLLRQAELAMYKCKKEGRNTVRFFEEAMQTEINRRR 721

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ +L  A+E  +L L Y   +     + +G EAL++W HP+ G +  S+F+ +AEE  
Sbjct: 722 DLEHELREAIEREQLVLHYQLQVDAQ-GQPLGAEALVRWAHPRRGLVPPSDFIPLAEETG 780

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ I  + L      +  W D+     + + +NI+ +        + + + I +     
Sbjct: 781 LIEPIGQWALSTACHQLARWADRPETHHLTMAVNISPRQFKSPTFVDDVVSKIRRAGIPA 840

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            ++KL  +ES  +   + S   L  LR  G  ++LDDFGT  S L+YL  +P   +K + 
Sbjct: 841 DKLKLEVTESTAIDEFDVSMSKLQALRTCGFMISLDDFGTGNSSLNYLTKLPLTQLKIDK 900

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     + +   + ++II M + +   +IA+ +  E     L   GC   Q      P
Sbjct: 901 SFIDDLPASHRDAMVAQTIIAMGRGLGLDVIAEGVETEAQHHFLVEQGCQAFQGYLFGRP 960

Query: 944 LGFNSILK-LLKE 955
               +    LL +
Sbjct: 961 QAVEAFEASLLAQ 973



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 14/193 (7%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +       R  L I    ++ +  +G    +  RL    ++                 + 
Sbjct: 230 WFSQPFQYRPYLRIAMMAVLLVLGLGAAGGLWIRLLRRSVKHRTAE------------IR 277

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                    +Q +  +       +  S D +         +        +L L    + G
Sbjct: 278 YKHQQLEAAAQQLRVERALLRAIIESSPDAMMLKSPQGVYLDCNAGALELLKLGREELLG 337

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   +   D  +F    D  V +    LQYE   +A D     + +    + ++  
Sbjct: 338 KTDE--QLLDDPDFVHFIRGHDQEVLHGGKPLQYETTFKAQDGSTRNLEMVKVLVHDAQA 395

Query: 508 DILRYIGIANDIT 520
                + I  DIT
Sbjct: 396 APAGILTIGRDIT 408


>gi|50121361|ref|YP_050528.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611887|emb|CAG75336.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
          Length = 722

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/580 (22%), Positives = 245/580 (42%), Gaps = 15/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +++   L          +   R       S D +   +              +LG +  
Sbjct: 152 ASLVMDKLEMRRLELARKASQVRFENIANTSPDTILCVNEKGMITFWNTAAEHMLGYSDE 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     +  I  +        L +        +  E  V+A       + + +    
Sbjct: 212 DIIGRN---INTIVPDAFIVQLNHLVTDRDSLMKGVMLELNVQAKSGSLVPVELSVS--M 266

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             + D + Y  I  DITE++++ E +   A  D LTG+ NR      L T L      + 
Sbjct: 267 WEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTLLTSNLETALK-----NE 321

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +M++D+D +K +ND LG + GDD+LV + ++I   ++  D++AR+ G+ F ++   
Sbjct: 322 PAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKAAVRSGDVVARMGGDEFALLFPG 381

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++       A  +   I+  + + + +I ++ASIG   +    +T  ++L +A+LA+Y 
Sbjct: 382 LSDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPDYGLTVQDLLTSADLALYQ 441

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F        +      L    A E  E  + Y P ++L   EIVG EAL
Sbjct: 442 AKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGAEAL 501

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +  + F+   E     + I  +++E   +    W  Q +     I IN+ 
Sbjct: 502 LRWRHPERGLLGPAAFLTALENGPWAERIGDWIVETACKQAAEWC-QTSDKYFRISINLF 560

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S       L + +   +++T   PS ++L  +E++++   E     L  LR+ GI +  D
Sbjct: 561 SAQFRTGLLAQKIMDTLARTGLEPSSLELEITENIILRYDENMLQPLKMLREAGIGIAFD 620

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           D+GT  + LS L   P   +K + + +     +    AI+R+I+ + K+    +IA+ + 
Sbjct: 621 DYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAEGVE 680

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                + L   GC+  Q      P+      +LLK   P+
Sbjct: 681 TLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720


>gi|312879196|ref|ZP_07738996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Aminomonas paucivorans DSM 12260]
 gi|310782487|gb|EFQ22885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Aminomonas paucivorans DSM 12260]
          Length = 948

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 127/588 (21%), Positives = 240/588 (40%), Gaps = 19/588 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG----SGDIVWDWDIVRDRVTTTP 432
           +   L+    +  +       +   +  + Q   +      +   +W  D     +   P
Sbjct: 369 MRSKLLSDGTVMSLFRDLSEREEAQARLQEQQSLLEALFANAPFELWVRDAKGRMLLQNP 428

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQ 491
                     G++ G        +    R  +R      +      R + E R    + +
Sbjct: 429 LARK----GQGNLLGEAVEEHRGLSEETRRLWRETNRKVLAGDVIQREEMEIR----EGR 480

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
              +   I P+    G +   +G++ D+TE+K   + I   AF D LT +PN + F   L
Sbjct: 481 EICLYKVIAPIW-REGKVRGILGVSLDVTEEKVQAQQIERMAFYDALTDLPNLRLFNAHL 539

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L  +  D      ++ +D+D +K +ND LG A+GD  LV +  RI  +L    + AR
Sbjct: 540 EERLA-AVRDGGEGGALLFLDLDDFKLVNDSLGHALGDQFLVEVAARIRTVLGPDRLAAR 598

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F ++         +   A  +      P         ++A++G A +    +   
Sbjct: 599 LGGDEFLVLSAPGEGCRDVDILANELLGLFEAPFEQGGVRQFLSATLGVACFPEDGLYPE 658

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +L  A++A++ AK  G      +             ++  L  A+E  EL + + P + 
Sbjct: 659 ALLAQADMALHKAKREGKRSFRFYDAALQEEVVKSRELENHLRDALEAGELEVFFQPQVG 718

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           +    +  LEAL +W  P  G IS   F+ +AE   +I  +   +L    R       Q 
Sbjct: 719 VSSGRVEALEALARWHSPTLGQISPGRFIPVAERSGLIVPLGALVLREACRFAAGLEAQG 778

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P + + +N++++ LL  +  E    ++ +T  +PS +++  +E+ +M + +R    L 
Sbjct: 779 L-PSLRVAVNVSARQLLQEDFAETTLRVLEETGLAPSLLEVEITETTLMESFDRVSETLR 837

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKN 908
            LR+ G+ + LDDFG   S L+YL  +P DT+K + S +  S  E    I R+++ +  +
Sbjct: 838 HLREKGVRVALDDFGMGYSSLTYLRRLPLDTLKIDRSFIVDSRREGNRVITRAMVRLGHD 897

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +   ++A+ +  E          CD IQ    + PL    +   L  +
Sbjct: 898 LGLEVVAEGVETEEHRAFADEAECDVIQGYWYSRPLPPEEVRAFLSRQ 945



 Score = 73.8 bits (180), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 16/252 (6%)

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
           KV Y+         +                   +A    +     ++  ++     +L 
Sbjct: 164 KVSYVASLPEIRCVLGTGAYVLDLDRALRAHLRGVALTGSFILILGLFISLR-----ILS 218

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
                   +      +A   +    +       G    ++L  F  +   L        +
Sbjct: 219 PLLKSYSVLLEAMRGLARDPQKPPTLSLEGFREGSESWLLLSAFLDMDRRLRETGAQ--L 276

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             D ER  + V  + D   + D     V T      ++G +   +           H +D
Sbjct: 277 LQDEERLRILVEEAPDGFLELDGDSRVVRTNRRFCELMGASPEDLLSRPVE--ELFHPDD 334

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                 + +  +  R G +  E R+         + +R + +  S+G ++    +  D++
Sbjct: 335 LITTPLVYEEVL--RGGVVTRERRLLRPWGAPLRVEMRSKLL--SDGTVM---SLFRDLS 387

Query: 521 EQKKSLEGILCN 532
           E++++   +   
Sbjct: 388 EREEAQARLQEQ 399


>gi|295400569|ref|ZP_06810547.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977472|gb|EFG53072.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/593 (22%), Positives = 247/593 (41%), Gaps = 20/593 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           +    LV  +   V ++G              Q +    +R       + + +       
Sbjct: 239 MWISFLVFLVWEAVYILGVYAQIGRKLFAKHKQELEVSEKRFKRLSEMTAEGIIVH-AHG 297

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +        + G     +          +      N           R    +   ++
Sbjct: 298 KVIEANKAACQLFGYVEKEIIHMPIQ--DLVIPESLKN---------AGRCQEGKCAIQL 346

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R  D       + ++   +   +    +    DITE+K S E   C A  D+LTG+PN++
Sbjct: 347 RRKDGTIFNAEV-VQYEYDYGANKKVNVAAIRDITERKNSKEKRQCIAVHDDLTGLPNKE 405

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +    +   +  ++        VM+++I   K IND  G +VGD VL+ +     +    
Sbjct: 406 ALHRAIAKKIQEASCL-REEVAVMLLEISGMKTINDFYGYSVGDQVLLRVVEEWKKRCDE 464

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             +L R +GN F  +L       K    A  + +    P+ +   E+ V   IG + +  
Sbjct: 465 SILLGRWNGNEFIAVLSGST-KEKAKALANQLSEIADEPVVVDGLELYVMIKIGISQYPK 523

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLV 723
               +  +++ A++A Y  +    +    F     R  +  I  +++L  A+E  E  L 
Sbjct: 524 DGTDAKTLIRKADIARYKLRQNAASQFLFFEKPMTREIQEKIATEQELRRALEREEFVLY 583

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P I+L    + G+EALI+W+HP+ G IS   F+ +AE+  MI  IN +++    +   
Sbjct: 584 YQPQIQLDTGMVTGMEALIRWNHPEKGLISPYAFISVAEQTGMIIPINEWVIRMACQQTK 643

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   P + + +N++  +  +      +  L+ +T   P  + L  +E + M + E+
Sbjct: 644 QLLKDF--PNLSVSVNLSPYEFENRRFVHKLVKLLEETGIPPHHLDLEITERMTM-DTEK 700

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
           +  +L RL+ IG+++++DDFGT  S LSYL  +P D +K + S +     K+ AIL +II
Sbjct: 701 AIAILKRLKSIGVTISMDDFGTGYSSLSYLTALPIDRLKIDRSFVRNIHGKKEAILPAII 760

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  NI   ++A+ +  E ++  L    CD  Q  + A PL +  ++  L E 
Sbjct: 761 RLGHNIGVKVLAEGVETEEEVAYLKDKHCDEAQGYYFAPPLSYEELIVFLCEH 813


>gi|172039089|ref|YP_001805590.1| hypothetical protein cce_4176 [Cyanothece sp. ATCC 51142]
 gi|171700543|gb|ACB53524.1| hypothetical protein cce_4176 [Cyanothece sp. ATCC 51142]
          Length = 699

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 147/613 (23%), Positives = 273/613 (44%), Gaps = 28/613 (4%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
           +  + I   + I      D  Q       ++  ++        +++     +    D  R
Sbjct: 110 VSYYIISTSLDIDLFNPLDPGQLQQEEEAMIETMMADDNNKSTLISDESLQERDHDDLIR 169

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +     S + + + D   +     P  +                     H         
Sbjct: 170 LASFPELSPNPIIEIDFSGNLTYLNPAASIKF---------KTIGQDKLKHP-----VLA 215

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L S V   +G L     +  AD    ++         S   ++R      DIT +K++ 
Sbjct: 216 GLLSEVQNIQGNLLLREVMIGADIFEQYVH------YLSEHQLIR--SYLFDITARKQAE 267

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LT +PNR  F ++L   L  +  +++L   ++ +D+D +K +ND LG  
Sbjct: 268 KNLEYRAFYDTLTDLPNRNYFDEKLEIALVKAKQNNHL-MALLFLDLDSFKNVNDTLGHK 326

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +GD +L S  RR+   ++  D+++R  G+ F ++L   N      + A  +   +  P  
Sbjct: 327 IGDQLLKSFARRLSSCVRNNDVVSRWGGDEFTLLLPQINTPEDTINLAQRILDDLKQPFE 386

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDR 704
           +   ++ +  SIG A +      +  +LKNA+ A+Y AK RG NH   +R  ++S  S  
Sbjct: 387 VSGHQLYIKTSIGIAIYPQDGEDTETLLKNADAALYRAKERGKNHYRFYRSTMTSKASLL 446

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  L  A+E     L Y P +RL + +I G+EAL++W HP+ G +S    + +AE+ 
Sbjct: 447 LKLENLLYKALEEEAFSLDYQPQLRLTNNKISGMEALLRWYHPELGQVSPLRLIPLAEKT 506

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I+L++L+   +   +W+ Q   P I I +N+++K      L   +  ++ +T   
Sbjct: 507 DLIIPISLWVLKTACQQNKAWQKQGL-PAIPIAVNLSTKQFQQPNLVNIVTQVLEETELD 565

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + L  +E+ +M N + S+  L +LR IG+ ++LDDFGT    L+YL   P  T+K +
Sbjct: 566 PHLLDLEITETAMMENIDFSQETLQKLRDIGVQISLDDFGTGYCSLAYLQKFPITTLKID 625

Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    +     AI+ +II + K+ +  +IA+ +     ++ L R+ C  IQ    + 
Sbjct: 626 QSFIQTLQNNPANTAIISAIIGLGKSFDLRVIAEGVETLQQLEFLQRLHCQEIQGFWFSR 685

Query: 943 PLGFNSILKLLKE 955
           PL        L +
Sbjct: 686 PLKPADATTFLSQ 698


>gi|218246195|ref|YP_002371566.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 8801]
 gi|218166673|gb|ACK65410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 840

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 260/564 (46%), Gaps = 13/564 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +R  L V  + + +   +      +        +LG  +  + G   + L  
Sbjct: 279 EAKLTTGKDRYRLFVEQATEGILLVNCETQYIIEANQAYCHLLGYTTAEIIGLSLHQLIA 338

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I   D+      L S V         E   R  D     +  +I   +    +I  +  +
Sbjct: 339 I---DKAIIDQEL-SCVTSETPYFIKESIHRHKDGSLISVSGKINRTTYQGQEI--FCLV 392

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI ++K++ E +   A  D LT +PNR+SF  +L   LD +    +L   VM +DID 
Sbjct: 393 IRDIRDRKQAEEQLQYQALHDPLTNLPNRESFNQKLVLALDHAQRYQHL-MAVMFVDIDS 451

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +  IN+ LG ++GD +L S  +R+   ++  D +AR   + F ++L    N+      A 
Sbjct: 452 FTNINNTLGPSIGDRLLDSFGKRLSSCVRTGDTVARWGSDEFVLLLPQIKNTEDTVKLAQ 511

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++ +P  L +  + V  SIG A +         +LKNA  A+   K +G NH + +
Sbjct: 512 RIFDNLQVPFILDDHRLPVKCSIGIAVYPQDGEAGETLLKNAGTALGRTKEQGRNHYQFY 571

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  S  +  + ++  L   +E  + +L Y P I L  +++VG+EAL++W+HP  G I+
Sbjct: 572 NPNLSSEAALLLRLESLLHQGLEKKQFFLHYQPQINLKTKKVVGMEALLRWEHPSLGIIN 631

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AE+  +I  +  ++L+      ISW+     PPI I +N++++++    L E 
Sbjct: 632 PQKFIPLAEKTDLILHLGKWVLQTACEQNISWQKDGL-PPISIGVNLSAREVQQPNLAEV 690

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +++ T   P  ++L  +E  +  +  ++R  L  L+ +G+ + LDDFGT  S L YL
Sbjct: 691 VARVLNDTGLDPQWLELELTEMSLRQHLTQARKSLRDLKNLGVRIALDDFGTGFSSLGYL 750

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               F T+K + + +           I+ + + ++K     I+A+ +  E  +K L+ + 
Sbjct: 751 QQFSFRTLKLHQAFIRDLRGTSEELGIISAALAISKGFNMRIVAEGVETEEQLKILSNLN 810

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+ IQ    + PL        L+ 
Sbjct: 811 CEEIQGYCFSRPLPVKEATVFLQN 834


>gi|197116513|ref|YP_002136940.1| HAMP domain-containing protein diguanylate
           cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
 gi|197085873|gb|ACH37144.1| diguanylate cyclase/phosphodiesterase, HAMP domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 721

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 236/450 (52%), Gaps = 10/450 (2%)

Query: 511 RYIGIANDITEQ----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +  + ++I E+    ++    +   A  D LT +PNR  F DRL   L  +        
Sbjct: 246 GFNEMLSEIEERNQILRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALYQAERSRQA-L 304

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           +V+ ID+D +K IND LG   GD +L+ +  R+  +++  D +ARL G+ F I   +  N
Sbjct: 305 SVIFIDLDHFKDINDTLGHRTGDLLLIEVASRLSTVVRSCDTVARLGGDEFTIFTQNVVN 364

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +   A  A  +    A P +L E EI VTASIG   +     T  E+L NA++AMYHAK 
Sbjct: 365 AENAAIVAAKLNGLFAKPFHLGESEIYVTASIGVTLFPHDGKTVDELLMNADIAMYHAKA 424

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F   ++   ++RV +  DL LA+E  E  L Y P + L+   +  +EAL++W
Sbjct: 425 CGKNVYKMFDRKMNEHATERVTLLSDLRLALERDEFVLHYQPKVDLLTGNVTSVEALVRW 484

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G ++  +F+ ++EE   I  +  ++L         W++Q     + + +N++   
Sbjct: 485 MHPRLGMLAPDKFIRLSEESGFIVELTDWVLRTACSQAKKWQEQNLG-SVRVAVNLSPYH 543

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               ++ E + +++  T   P+ +++  +ES +M N E +  L   LR++G+++++DDFG
Sbjct: 544 FQRQDVKEAILSVLEATGLEPALLEIEITESALMQNDEYTCALFRELRELGMTISVDDFG 603

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P +T+K + + +     + +  AI+ +II MAK++   I+A+ +    
Sbjct: 604 TGYSSLSYLHRFPINTLKIDRTFILNMMKSTEDQAIVTAIIAMAKSLNMQIVAEGVETVD 663

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +++L   GC  IQ   V+ P+  +++ + 
Sbjct: 664 QLEKLKDQGCHEIQGFLVSRPVAADAVTEF 693


>gi|218894545|ref|YP_002443415.1| hypothetical protein PLES_58371 [Pseudomonas aeruginosa LESB58]
 gi|218774774|emb|CAW30591.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 951

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/577 (22%), Positives = 268/577 (46%), Gaps = 10/577 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T +    +     + +    +  +     + + +   D   + +      + I G   
Sbjct: 379 RVTRMLGTRSDISARKRLEEQQQLAATVFEAASESIVILDPAYNLLAVNQAFSRITGYRR 438

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G   + L       + ++R I      +  G+ Q E      +   +   +++  +
Sbjct: 439 EDVVGRNASLLVNT-PEAQRHYRQIRAELRQH--GQWQGELVDTRKNGDPYPQWLQLNLL 495

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG+    +G   D++ ++   E +      D LTG+ NR+ F +RL      +  ++
Sbjct: 496 RDGNGEATHIVGFFTDLSARRDVEERLRHLLHYDELTGLANRRLFRERLHEAAQRARQEE 555

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ID+D++K +ND LG  V D +L  + +R+       + LARL+G+ F I+L 
Sbjct: 556 GG-LALLLIDLDRFKLLNDSLGHEVADQLLREMAQRLRRTAPEANTLARLAGDEFAILLD 614

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +  ++  +  +   +  P+++L  E+ + AS+G + ++      S ++  A LAM 
Sbjct: 615 GGTGTAALSRLSERLLVQLRQPVSVLGHELILGASLGISLFSEQAREISVLMSQANLAMQ 674

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           HAK  GGN  + FR +   S   R+ ++  L  AVE  +L + Y P + L       +EA
Sbjct: 675 HAKQLGGNTFQFFRDNLQDSTLERLRLETRLRKAVEEGQLDVHYQPKLCLASGCADSVEA 734

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I  S F+ +AEE  +I  I  F+L R       W  +     + + +N+
Sbjct: 735 LVRWHHPEEGMIPPSTFIGLAEECGLIGEIGEFVLRRACLQAAEWSQRGLN--LRVSVNL 792

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L + +++ ++ +    ++++L  +ES  +   +       +LR++G+ L++
Sbjct: 793 SVHQLRQGDLLDVVRSALADSGLPAAQLELELTESQWLDALDSVLATFRQLREMGVKLSV 852

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P D +K + S +       +  AI+R+II MA +++  ++A+ +
Sbjct: 853 DDFGTGYSSLSYLKRLPLDYLKIDQSFVRDLTQNSEDAAIIRAIIAMAHSLDLKVVAEGV 912

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                   L    CD +Q   +  PL  +++ + L++
Sbjct: 913 ETIEQRDFLVAQRCDELQGYLIGRPLPAHALEEGLRQ 949



 Score =  118 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 125/400 (31%), Gaps = 30/400 (7%)

Query: 163 MEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           + +   +   + L+      +      L       +  L  +          SS L+  +
Sbjct: 8   LALPGGSTDVLRLYAREIAIERTRLLYLGSRTPTLLMLLGGVTSACLVWGKVSSWLLGGW 67

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            +  V+L  + +      +  +        WR        +S +   F  +      A +
Sbjct: 68  LVWLVLLAVLRLLQVAAFQQADSRRQASRHWRRTFLCGAGASGLTLAFAVIMLVPADAFL 127

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI---------------- 326
             +   G+   AIL     Y   + A +       +       +                
Sbjct: 128 QQVLVFGLVAAAILSASVAYAVSLPAFLTFALPGLLPSIVFLLLQPHSLLQGWGVLGLIL 187

Query: 327 ----------IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
                     I+  ++G         A  L          A+ ++L  ++ Q  LV   +
Sbjct: 188 LVALLVVAGQIHRLVQGALLRRFQTQALNLHLERVNAEAEALNRKLAQEVGQRRLVEREL 247

Query: 377 LIVILIGFTVIQHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
                     ++      G  SQ +     R ++A+  S   +WDWD+   RV  +  + 
Sbjct: 248 RAARDALQRRVEARTEELGATSQALSQSEARLAMALEASELGLWDWDLESGRVQHS-YLE 306

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    +G      R  +  IH  D    R  L   +  R    + E+RVR  +  + W+
Sbjct: 307 AVFS-DAGDGPEDYRRLIESIHPGDLPRIRRALAEHLKGRSELYRVEYRVRDREGGWRWL 365

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             R R M  +  G + R +G  +DI+ +K+  E     A 
Sbjct: 366 EDRGRAMARDPRGRVTRMLGTRSDISARKRLEEQQQLAAT 405


>gi|206563013|ref|YP_002233776.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
 gi|198039053|emb|CAR55016.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 748

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/619 (21%), Positives = 260/619 (42%), Gaps = 15/619 (2%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W + F+   G+ +       +   +P+     +L  I     +  H       ++ +   
Sbjct: 133 WSVPFLDDAGIVLGAFAVYHHWPCRPSDEETALLRDIGNSVGLAVHQDR---IARQLAHS 189

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--- 460
            E   L V    + +         + + P    ++ +    +   +   +      D   
Sbjct: 190 EEHHRLVVNSLSEGILVISREGVVIASNPSANRMMRVKGELVGRRLSTVILRKLREDGTP 249

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDI 519
            +         +      L Y      AD    W+     P+           +   NDI
Sbjct: 250 IEPRDWPSRRALETATPMLDYTVGFGLADGDIIWVRGNAVPIVRPGETRADSVLVSFNDI 309

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKK 578
              +++ + +   A +D LTG+ NR+   DR+  +     A     R  ++ ID+  +KK
Sbjct: 310 GPVREAQQQLRYMATRDALTGLYNRRWLGDRMRELFGVHDAATGPARVAILFIDLVGFKK 369

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G   GD +L S+  R+         L R+ G+ F I++   ++  ++A  A  + 
Sbjct: 370 VNDTAGHDAGDALLRSVAARLSACAGRYA-LTRVGGDEFVILVDDCDDPERLAVLAREVI 428

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +IA P  +   E  +  SIG +        +  +++NA+ AMY AK RG NH   F   
Sbjct: 429 DAIAKPFAIANNEYWLGVSIGISVAPRDGDDAVTLMRNADSAMYDAKQRGRNHFTFFTAQ 488

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                +    I++ L  A+ +  L L Y P++       VG EAL++W  P+ G +S +E
Sbjct: 489 LNLRLQRRFAIEQSLRRALASDMLRLAYQPVVDARSGRTVGAEALLRWTSPELGPMSPAE 548

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  I  ++LE   R    WR     P + + +N++ +      L E +  
Sbjct: 549 FIPVAEDTGLIVGIGQWVLETACRQAAEWRR-TIAPDLMLAVNLSPRQF-HEGLVESVGR 606

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++T   PS ++L  +E V+M + +    +L  L  + + +++DDFGT  S L+YL   
Sbjct: 607 CLAQTRLDPSALELEITEGVLMNDTDTVLPMLEALTDMNVRISVDDFGTGYSSLAYLKRF 666

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S ++G       +AI ++++ MA ++   + A+ +  +     L ++GCD 
Sbjct: 667 PLHNLKVDRSFVSGVPDHHDSVAITQAVVAMAHSLGMKVTAEGVETQAQSWFLQQIGCDM 726

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    + PL  +   + L
Sbjct: 727 QQGYLFSRPLEASDYARRL 745


>gi|255318505|ref|ZP_05359738.1| two-component response regulator [Acinetobacter radioresistens
           SK82]
 gi|262378733|ref|ZP_06071890.1| two-component response regulator [Acinetobacter radioresistens
           SH164]
 gi|255304497|gb|EET83681.1| two-component response regulator [Acinetobacter radioresistens
           SK82]
 gi|262300018|gb|EEY87930.1| two-component response regulator [Acinetobacter radioresistens
           SH164]
          Length = 849

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/565 (23%), Positives = 251/565 (44%), Gaps = 16/565 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI 449
                ++            V  S   ++  D   + V     P     +G     + G  
Sbjct: 283 RDISVNRKNKESLRLLKRGVDASPSGMFITDASENMVISFVNPAFLKQVGYTEEEVIGRN 342

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            N+L     +       +    V  ++  +Q   +    D  + W  + + P+ + +G  
Sbjct: 343 YNFLQG--RDTNLEQLALFKQAVKEQKD-VQITLKNYCRDGSWFWNRLMLGPILDQDGKC 399

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++GI  DIT+Q+   E I      D LTG+ N+ +F   L    +          T++
Sbjct: 400 THFLGIQEDITQQRIHEEYIEYQNTHDQLTGLLNQINFEKVLEQTFEKQK-----LLTLL 454

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +  +ND LG  VG+ V+ ++  R+ + LK  ++L+R + + F +++  +++  K
Sbjct: 455 YIDLDDFSSMNDSLGYYVGNKVIKNIASRLKDFLKPDEVLSRYAEDEFVLLIKGQHDHKK 514

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I   A  +   I+ P  + +  + ++ASIG     S    +SE+L  + LAM  AK +G 
Sbjct: 515 ITTRAANILDLISEPFQVDDHTLHLSASIGIVINNSFIQCASELLYRSTLAMREAKRQGR 574

Query: 690 NHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           N    +  S+  S  +    ++ +L  AV+  +  L Y P+I+ +   + G+EALI+W H
Sbjct: 575 NTWHCYEESNKISPNLDYAHLRLELMEAVKKKQFTLFYQPLIKPLTGVVQGVEALIRWYH 634

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G I    F+ +AE    I  I  ++LE    DI  W    +   + + +NI+     
Sbjct: 635 PERGYIFPDFFIPLAERTGQIVNIGQWVLETACLDIAKWNKA-HDSQLTVSVNISPLQFG 693

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                E +Q  +  +      +K+  +E V++   +R+  +L  +R +G+ + +DDFGT 
Sbjct: 694 RAGFLEELQKALKISQLPAELLKIEITEGVIISGADRAIEILKSIRALGVHVVIDDFGTG 753

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL  +P   +K + S +     + +  AI+RSII +A  +   ++A+ +      
Sbjct: 754 YSSLSYLRLLPITQIKLDRSFIVNLTISVQDAAIVRSIIFLAHQLNLEVVAEGVETLEQA 813

Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949
             L +  CD  Q    A P   + +
Sbjct: 814 SLLYQQDCDLFQGYFYARPAPISDL 838



 Score = 47.6 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 14/158 (8%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLG--------SGDIVWDWDIVRDRVTTTPDI 434
              +++   +    +  +  D  +Q +A+            D++ + D+    + T    
Sbjct: 147 NIRLLEQAASLVALAIEL-DDERQQKIAINEKYSSFYNYHPDVILELDLQGYVLNTNIAC 205

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             I G +   + G   ++   I     +       S +  +      E  V     +  W
Sbjct: 206 REITGFSQEQIQGK--HYWTLIPDEYHELVDAAFKSALLGKSQHY--EIPVYNVIEKIIW 261

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           + I   P+   N  +     IA DI+  +K+ E +   
Sbjct: 262 LDIINLPII-QNQKVTGVFTIARDISVNRKNKESLRLL 298


>gi|167622751|ref|YP_001673045.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352773|gb|ABZ75386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 819

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 148/568 (26%), Positives = 257/568 (45%), Gaps = 12/568 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
                 +      E  S     S + V   D+    +        I G     + G   R
Sbjct: 252 RNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGYEKEELLGKNPR 311

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +    H  D+  F  +    +   +G+   E   R  +      ++ I  + +    I 
Sbjct: 312 VFNSGRH--DKVFFTKLWSDLLT--KGKWHGEIWNRRKNGAIFPQMLNISAVYDDEHQIR 367

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ + NDI+ QK+S   +   AF D LT +PNR +    L   L  ++   N R  ++ 
Sbjct: 368 YFVAVFNDISAQKQSEAELARVAFHDPLTKLPNRMALNTGLEQELKQAS-HSNTRLGLVY 426

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K+IN+  G  +GD+VL+ L+RR    L     +ARL  + F +IL + +++ ++
Sbjct: 427 IDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNIDSNDRL 486

Query: 631 ADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                 +RK    P  L E  +  +TAS+G A +      SS +L NAE+AM+  K  G 
Sbjct: 487 LLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHRVKQDGR 546

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +  S       ++ ++  L  A+E +  +L Y P I     ++VG EAL++W  P
Sbjct: 547 NSYAFYTESLTQESVAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEALLRWVDP 606

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G+IS   F+ +AE++ +I+ I  ++L+R       WR Q       I +N+A + +  
Sbjct: 607 VLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQGQRWRKQGVSFG-RIAVNVAGQQIQR 665

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +   + +  ++ +T    S ++L  +ES +M NPE     L +L ++GI L++DDFGT  
Sbjct: 666 SSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDDFGTGY 725

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P   +K + S + G        AI ++II M   +   ++A+ +  +    
Sbjct: 726 SSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVETQAQAD 785

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L    CD+ Q    + P     +   L
Sbjct: 786 FLKDNHCDHAQGYFYSKPKLVEELTAFL 813



 Score = 41.9 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/113 (10%), Positives = 33/113 (29%), Gaps = 2/113 (1%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           VW  D     +     +      +   +     +           +F       +     
Sbjct: 155 VWMKDTSGRYMMVNHSVELAWNRSREQILNFTDD--ELFEPRLAKHFIASDMESIRKGVE 212

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               E       +   W+     P+ + +G++   +GI+ +I+  K + + + 
Sbjct: 213 VSAGECEGLDIGDVDSWLETTKVPIMDDDGELTGVLGISRNISSHKAAKDQLE 265


>gi|156741489|ref|YP_001431618.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232817|gb|ABU57600.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 794

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/577 (22%), Positives = 270/577 (46%), Gaps = 10/577 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L        +  D      A+  + D +   D+        P    + GL    +   
Sbjct: 220 AILRGISRHHRLDVDLRLMMAAISSTSDGIVIADLDGVPHYQNPAFQKMTGLTLDDL--R 277

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +   L  ++  D    R  L +    +    + E R+         +++ I P+ +++  
Sbjct: 278 MAGGLLRLYR-DVGTARAALSAVRSGQ--SYRGEMRLIDRQGAAISVLLHIDPVLDASNQ 334

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  + +  D+T++K + + +   +  D LTG+ NR   LDRL   L+           +
Sbjct: 335 VIALVAVHTDVTQRKLTEDRLAYLSSHDPLTGLANRTLLLDRLQLALERRNRHGAALCGI 394

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D++K+IND LG  VGD+VL+++  R+  + +  D +ARL G+ F ++L S  +  
Sbjct: 395 LLLDLDRFKQINDSLGHMVGDEVLIAVAGRLKHITRPGDTVARLGGDEFAVVLDSVGSLD 454

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            I   A+ ++++++ PI + ++ + V  S+G A       +++ +L++A+ A++ AK RG
Sbjct: 455 DIWRIALRIQQALSHPITVQDQSLMVGVSLGIAIDDGRTTSAAALLRDADTALHQAKARG 514

Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            + +  F  +     + ++ ++ +L  A+    L L Y PI+ L    I G EAL++W  
Sbjct: 515 RSRIVLFEEAMHTAATTQLQLEIELRQALHRQALLLHYQPIVDLASGAIRGFEALMRWHR 574

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDL 805
           P  G +    F+ +AEE  MI A+  + +  + R    WRDQ      + + +NI S+ L
Sbjct: 575 PLSGLVLPDGFLPVAEEAGMIPAMGAWSIVEVCRQARRWRDQFGSAAELPVSVNIHSRQL 634

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              EL   ++  + +     + + +  +E   + + +     L +L+++G+ + LDDFGT
Sbjct: 635 EQTELPHQVRQALREFNLPGAALTIEITEKATLRDLDLVVTQLQQLKELGVQVVLDDFGT 694

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L +L  +P + VK + S +         I I+R++I +A+ +   ++A+ +  E  
Sbjct: 695 GYSSLGHLARLPINGVKIDRSFVQSMMHDPLSITIVRAVITLARELNLGVVAEGVETEEQ 754

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              L ++GC   Q       +   +  + +  R  L 
Sbjct: 755 RAALLQLGCTCAQGWLFGRAVDAEAAAEWIARRRELS 791


>gi|209542675|ref|YP_002274904.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530352|gb|ACI50289.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 710

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/622 (21%), Positives = 266/622 (42%), Gaps = 44/622 (7%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           ++  + +              +  A     V     +  T           ++ I  D  
Sbjct: 111 VLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHET----AEELRKANRKILRDKL 166

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWL--------PYI 456
                V      +    +  DR+         + G     +                  +
Sbjct: 167 FMDTIVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALV 226

Query: 457 HIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           H     R+     L                +R        +  R   +++  GD    + 
Sbjct: 227 HPEGTRREGVSESL----------------LRNRAGDMRAVATRYVTIADERGDARWELC 270

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +A+D+TE++++ + +   A  D LTG+ NR  F  RL  +             ++ ID+D
Sbjct: 271 VADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVA-----GHEAILLCIDLD 325

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND+ G A GD +L  +  R+    +  D++ARL G+ F II  +     ++A  A
Sbjct: 326 YFKTVNDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRA 385

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++I+ P  +  + + + ASIG AS+ +   +S  + ++A++A+Y AK  G N   S
Sbjct: 386 GEIVETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADIALYKAKALGRNCFHS 445

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    S    ++  + ++L  A+ +S++ L + P+  + D +I   EAL++W+HP  G I
Sbjct: 446 FDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAACEALVRWNHPVRGMI 505

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  +  ++L    R+ + W      P + + +N++     ++    
Sbjct: 506 PPDQFIGLAEENGLIHELGEWVLRAACREAVCWP-----PHVKVAVNVSPVQFRNSRFMA 560

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q+ + +    P R+++  +E++ + N   +R +L +L  +G S+ LDDFGT  S LSY
Sbjct: 561 IVQSALMEAGLVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSY 620

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L    F  +K + S +    EK  + I+++I+ +A++++    A+ +  +     L  MG
Sbjct: 621 LRLFSFQKIKIDRSFVKELPEKSASGIIQAIVSLAQSMDIPTTAEGVETQEQWARLHAMG 680

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C   Q   +  P    +I + L
Sbjct: 681 CSEAQGFLLGRPEPVAAIRERL 702


>gi|323487737|ref|ZP_08092995.1| signaling protein YkoW [Planococcus donghaensis MPA1U2]
 gi|323398471|gb|EGA91259.1| signaling protein YkoW [Planococcus donghaensis MPA1U2]
          Length = 814

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 159/789 (20%), Positives = 314/789 (39%), Gaps = 27/789 (3%)

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIF--YMVNRSSMLIPTFAMAWVVLGYISIDFG 237
            + D   +       + G     A   T F   M   + +LI +  +      Y +I   
Sbjct: 31  DFVDKNKNKVRITSFMAGFVIYFAYLNTYFTGAMTPINLLLIVSIILFCSFAVYSAI--- 87

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA--KVGYITFSGIACIAI 295
             S +         +       A   SL+     Y+   +      +       I+   +
Sbjct: 88  --STICYKEVTFQRLLIGSMIFAFCISLV----NYIDLRKIMIENNLDMNLLLFISANIL 141

Query: 296 LFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           L   +         + +I    +  + Y    I          +         F  F   
Sbjct: 142 LLGNAIATFRFIRQLRKIEKIHVKWIIYGSVAIGLAFASIRYTLFSSITLFSNFDLFNNH 201

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            + I   L  +     L   +  +V L  F      L +    + I+ +  +        
Sbjct: 202 DIEIYDWLYFNNTLLPLTINIFGLVFLELFPSFISELYSEKQKELIYKNKHQYEALFENQ 261

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              ++  D   +          I G     +     ++   I  + R  F + L      
Sbjct: 262 AIAIFSVDDKGEINKVNEATKKITGFRPEELD-EYSSFSELIDEHQRAEFLSFLKIAFNG 320

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                  E ++         + I + P      ++        DITE  ++ E +   A+
Sbjct: 321 DSQMF--ETKLLTKFKNHIDVQITLVPNFLDE-ELTHINVFVKDITEIAEAREKMHHMAY 377

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LT +PNR+ F++ L   +  S         V  +D+D++K +ND+LG  +GD +L  
Sbjct: 378 HDSLTLLPNRRYFVEELDRRITYSTAFSQ--MAVCFLDLDRFKLVNDILGHQIGDQLLQV 435

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL--EREI 652
           L  R   L+    +++RL G+ F  +    ++          +   I  P  L    +E+
Sbjct: 436 LADRFRSLVDKDVVISRLGGDEFTFLFPDVSDYEVFQKQLEDILLQIQTPFLLGSQNQEL 495

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKED 710
            +T SIG A +        +++K A+ AMY AK +G N  E +          ++ ++ D
Sbjct: 496 YITGSIGIALYPEDSRVGEDLMKFADAAMYSAKEKGKNMYEFYHNYLKEKNPKQLSLEAD 555

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  AV+  +  + Y P I     ++ G+EAL++W+HPK G I   +F+ + E+  +I  +
Sbjct: 556 VRKAVKEKQFEIYYQPQIDYATGKMFGVEALLRWNHPKEGLIKPEDFIALVEDSELIIEL 615

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L   ++ + SW++Q     +++ +N++ K    +     ++ +  +T Y+  R+ L
Sbjct: 616 GEWVLSESSKQVKSWQEQ-GCEDLYLSVNVSIKQFFHHNFIGKIEEIFEETGYNLERLDL 674

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ + + E ++ +  RLR +GIS+++DDFGT  S L++L     D +K +GSL+  
Sbjct: 675 EITESMAIKDVEYAKDIFDRLRHLGISISMDDFGTGYSSLNHLKNFSIDRLKIDGSLVRD 734

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               EK   I+ +II MA+N++   +A+ +        L  +GC+ +Q    + PL  ++
Sbjct: 735 IETDEKARTIIDTIIVMARNLKLLSLAEQVETVEQEAYLKSIGCNEVQGYLYSEPLTGDN 794

Query: 949 ILKLLKERF 957
           + + L   +
Sbjct: 795 MGEFLTNNY 803


>gi|29831780|ref|NP_826414.1| sensory box/GGDEF family protein [Streptomyces avermitilis MA-4680]
 gi|29608897|dbj|BAC72949.1| putative sensory box/GGDEF family protein [Streptomyces avermitilis
           MA-4680]
          Length = 620

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/560 (23%), Positives = 264/560 (47%), Gaps = 32/560 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     VT    + T+LG  + ++ G     L  +  +            +  R+ RL+ 
Sbjct: 55  DREGLVVTANETLGTLLGTDADALAGKTAADLVDLSSD--PRAWHAYREVLRGRQARLRC 112

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R++  D +  W+ + + P+      IL  +    DI+  ++    +      D +T +
Sbjct: 113 TRRLKHPDGRSFWVQVTVSPLPEEERAILLSVA---DISAGRELQARLRHLQMHDPVTRL 169

Query: 542 PNRQSFLDRLTTILDLSAT--DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           PNR  F +RL+  L+  A       R  +  +D+D +K +ND LG  +GD +L ++  R+
Sbjct: 170 PNRTLFFERLSAALEAEAYEESGTGRIGLCYLDLDGFKAVNDTLGHRIGDRLLAAVAERL 229

Query: 600 GELLKFPDI-------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               +           +ARL G+ F +++     + ++AD A ++ K++  P +L  + +
Sbjct: 230 TRCAEEAGYARPSAPLVARLGGDEFALLVEDSTGTDQLADLAESVLKALQAPFDLSGQRL 289

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710
           +V+ASIG     ++  T++ +++ A+  +Y AK  G +    F             +   
Sbjct: 290 SVSASIGVVERHAAGTTATGLMQAADTTLYWAKADGKSRWTLFDPERNAHRMTRQALSSG 349

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E+ E  L Y P++ + D  + G+EAL++W+HP++G ++ + F+ +AEE   I  +
Sbjct: 350 LRPAIEHGEFVLEYQPLVGMEDGRLRGVEALVRWNHPQFGMLTPNRFIGLAEEDGSIVQL 409

Query: 771 NLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L    R    W+ +    PP+F+ +N+A + + D++L   +  ++++T  +P  ++
Sbjct: 410 GRWVLATACRQARRWQLEHPDAPPLFVSVNVAVRQVWDSDLVTDVAEILAETGLAPHLLQ 469

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES VMG+  R    L  L  +G+ + +DDFGT  S L+YL  +P   +K +GS + 
Sbjct: 470 LELTESAVMGSAGRPLQALQALSDMGVHIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVR 529

Query: 890 G---------------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           G                      ++ ++I +A  +  T+ A+ +        L  +GCD 
Sbjct: 530 GFQYDTSEKHDGTDARPNPADEVVVEAMIQLAHRLGLTVTAECVETSAQASRLRGIGCDT 589

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q    + P+  + I +LL+
Sbjct: 590 GQGWLYSRPVAPDRISELLR 609


>gi|317129891|ref|YP_004096173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474839|gb|ADU31442.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus cellulosilyticus DSM 2522]
          Length = 716

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/506 (26%), Positives = 244/506 (48%), Gaps = 22/506 (4%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+D   +        ++    ++         +  +   I P+ + N +++  I   NDI
Sbjct: 222 DKDIITSRFKQAFEGQKVEFDFKH-------GYRILHASITPIIHCN-EVIEVIATINDI 273

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE K S   +   A+ D LTG+PNR+   + L   L  + T    + +++++D+DK+K I
Sbjct: 274 TELKNSELAVKNMAYHDALTGLPNRRILEEDLMYRLVDAKTQQK-KASLIIVDLDKFKYI 332

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAI 635
           ND LG  VGD  ++    R+  L     +    L  L G+ F  I+I  +    +     
Sbjct: 333 NDTLGHNVGDRFIMMAAERLQTLTFDNHVEYFRLYHLGGDEFAWIIIGPD--EHVCIVTR 390

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +      P      E    ASIG + +        E++K A++A+  AKH GGN    F
Sbjct: 391 QILTLFDEPFYYRNGEFHQKASIGVSVFPEHATNPEELMKAADMALLSAKHAGGNTFRKF 450

Query: 696 RVSSFRSD--RVMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                     +V++++DL  A+  N++  L Y P++ +  ++I   EALI+W HPK G I
Sbjct: 451 NSQMKNVFVSKVLMEDDLRQAIIANNQFELFYQPVMDVKQQKINSCEALIRWYHPKKGLI 510

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           + ++F+ IAEE  +I  +  +++ +  RD+  W +      + I +NI++  L  ++  E
Sbjct: 511 NPADFIPIAEETGLIIPLGEWVIRQACRDLKRWEES--QIHLNISVNISAYQLKQSDFVE 568

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++S     P+RI+L  +E+ +M N   S   L +L++IG ++ +DDFG   S LSY
Sbjct: 569 RLTTIVSDERVLPNRIQLEITENGLMENTTDSINTLQKLKQIGFTIAIDDFGIGYSSLSY 628

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P + +K + S +          AI+ S++ + K++   ++A+ + G+     L+ +
Sbjct: 629 LKQFPVNCLKIDRSFVKDIPSDNSDSAIVSSVVKLGKDLGLLVVAEGVEGQEASDYLSSI 688

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            C Y+Q  + + P+ F     L+ E 
Sbjct: 689 ECPYLQGYYYSKPIKFEDFTDLMNEH 714



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 19/212 (8%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++Q       +S  +    E    A   S  +V   D     +        + G +   +
Sbjct: 19  LMQEYENISDYSHSMLIQLEELLRAFDHSCILVL-TDSSGSIIEVNDTYCQVSGYSRDEL 77

Query: 446 HGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G        +H      + +  +  + +         E + R  D   +W+   I P+ 
Sbjct: 78  VGNTH---RLVHSGYHTQEFYHKLWQTIMNG--DIWSGEIKNRKKDGSIYWVKATIYPIY 132

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N  G I  ++ I  DITE K   E +     +D  T I N Q+F+ R+     L + D  
Sbjct: 133 NKEGKIDMFLSIRLDITEGKIYEEKLRQIIEKDYSTIIKNIQNFIIRV-----LPSNDKG 187

Query: 564 LRPTVM------VIDIDKYKKINDVLGIAVGD 589
              +++      VI ID  K  N  +G  +G+
Sbjct: 188 PVVSLLEGHLAKVIGIDTEKAKNKPIGEVIGN 219


>gi|89901405|ref|YP_523876.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89346142|gb|ABD70345.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 802

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 131/576 (22%), Positives = 249/576 (43%), Gaps = 19/576 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            V +    +Q + +   R  LA      S D ++  D     +   P    +   +   +
Sbjct: 233 RVFSFRDITQSVDAQS-RLRLAAKVFESSVDAIFITDPDLTILAVNPVCERLTDTSQAQL 291

Query: 446 HGPIRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G      +              +L        G  + +  +  A      + +    + 
Sbjct: 292 LGESAKSLFQDPCDPELMVRVEQVLRD-----EGFWRGQVWLDRAGRSACAVHLSWVLLR 346

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G +L  I    D+TE+  + + I   A+ D LTG+PN+     R+   L ++    +
Sbjct: 347 DEDGAVLHTICFFKDLTEELAAQKRIEQLAYSDALTGLPNKLLLSQRVGFALRMAERHGS 406

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  V  +D+D +K IND +G   GD VLV +  RI   L+  D L RL G+ F I +  
Sbjct: 407 -QFGVFFLDLDHFKNINDSMGHVFGDRVLVEVAERIKRCLRDADTLCRLGGDDFVIFVQE 465

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++      A  +   +A    + E   +V  SIG A + +   +  E++K A+ AMY 
Sbjct: 466 I-DARGAEMLAQRILDLMAQAFLIEETSFSVGCSIGIALYPADGRSLDELIKCADTAMYL 524

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K RG      ++         R+ +   +  A+E     L Y P I L + ++VG+EAL
Sbjct: 525 VKERGRGSFRFYQPQMNVDLLSRMKMDHAMRRAMEQGMFRLHYQPQISLANGQLVGVEAL 584

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W   + GN+S   F+ +AEE   I  I  ++L+   R  + W++     P+ + +N++
Sbjct: 585 IRWLDGELGNVSPVLFIPLAEESGFIITIGTWVLKEAVRQAVLWQNAG--TPVTVSVNVS 642

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +      +  E +  ++  +  +P  ++L  +E++++ +   +   L  L  +G++L++D
Sbjct: 643 ALQFQQTDFVEIVANVLKDSGLAPYLLELELTETILVRDANETLNRLHALAALGVALSID 702

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P   +K + S + G    E   AI+ + I MA+ ++  ++A+ + 
Sbjct: 703 DFGTGYSSLAYLKKFPISKLKIDRSFVMGLPDDEGDRAIVSATIGMARGLKLKVVAEGVE 762

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  L  + C+  Q    +  L      +L+  
Sbjct: 763 TIAQRDYLAGLNCESFQGFLCSPGLPAEEFERLMAS 798



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 409 LAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           L + G  + VW  D V    +      A +LGL +  + G     L  +   D    +  
Sbjct: 8   LLIDGLIEAVWLVDPVSLRILAVNHAAADLLGLKAEDLVGKPAIELT-VTPED----QFF 62

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +         +  E  +R AD     +  R+  +    G  +  +GI  D+ +Q+++ +
Sbjct: 63  WEDIAAGLVDGIHSETLLRGADGMAVPVERRVSRVWPETGRAVYVVGI-RDLRQQRRTED 121

Query: 528 GILCN 532
            +   
Sbjct: 122 ELESL 126



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 10/151 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I+ +         + S        +  + D +   D   D        A +  +    + 
Sbjct: 110 IRDLRQQRRTEDELESLVAELRATLESTADGILVTDRSGDIRNYNRHFAAMWDVPEELLL 169

Query: 447 GPIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            P    L   H+     D   + T L +              +         +    RP 
Sbjct: 170 NPNDRALHG-HLASRVLDAAAYETRLRAIAESPLLETTDVLILITG----RLLERVSRPQ 224

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +  G     +    DIT+   +   +   A
Sbjct: 225 FSR-GQATGRVFSFRDITQSVDAQSRLRLAA 254


>gi|114778687|ref|ZP_01453499.1| hypothetical protein SPV1_13467 [Mariprofundus ferrooxydans PV-1]
 gi|114551049|gb|EAU53611.1| hypothetical protein SPV1_13467 [Mariprofundus ferrooxydans PV-1]
          Length = 696

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 146/583 (25%), Positives = 267/583 (45%), Gaps = 26/583 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I  + ++  L      + + +  ER SLA   + D +WDW+IV  +V  +     ++G++
Sbjct: 115 ILLSRVRMQLEMCRLYKDVKTSEERYSLAFAAANDGLWDWNIVTGKVFFSDHWYEMMGMS 174

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                  I+ W   +H +D    R  +D  +      ++ E+R    D  + WM+ R R 
Sbjct: 175 PDCAFDSIKQWFDRVHPDDIAALRQAVDDHLSDPLRIVKQEYRALHEDGSYRWMLCRARA 234

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +  G  LR  G   DI+  K            D +TG+PN   F+DRL  +   +   
Sbjct: 235 LFSDTGTPLRMTGAQADISASK----------TFDPITGLPNAAVFMDRLQRVHAHARRT 284

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL---------LKFPDILARL 612
            +    +  + ++  +K+   LG A  + +  ++ RR+ E+         LK P  ++ L
Sbjct: 285 GSANLALFSLSLNHKEKVTSALGSAGYEKLTSAIARRVNEVAATESCLTQLKEPAFISLL 344

Query: 613 SGNRFGIILISE-NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + NRF I+L      S ++      +++S+  P  + +  +  T SIG A  +       
Sbjct: 345 ADNRFMILLEGIPQESAELLKIGTCIQRSLGQPFTIFDETVYCTTSIGIALPSKDNDAVD 404

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           E++++A  A   A+  G +    +         D + ++ +L  A+ N EL   Y P++ 
Sbjct: 405 EVIQDAIAAESIARQAGEDITHIYNPHLHGKALDHLRLENELRHAINNGELRAFYQPLVS 464

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               E+ G E+L++W HPK G ++   F+ +AE++ +I +I+L+M     R    W +  
Sbjct: 465 -SSGELAGSESLVRWQHPKHGLLAPYHFIPLAEDVGLIHSIDLWMFRESCRQYREWIENG 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P +FI +NI+ + L   E  + + + + +    P  I L  +ES+  G+ E+   LL 
Sbjct: 524 GSPTMFISVNISVQGL-SIEWADQVLSAVKEFGIPPESIHLEITESIFAGDIEKIITLLE 582

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
           +L  +GIS  +DDFGT  S  SYL  +P   +K + + +     +EK   ++ +II MA 
Sbjct: 583 QLVDLGISFAIDDFGTGYSCFSYLRRLPASYLKIDKAFIDDVADSEKARLLVSNIIHMAH 642

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           ++   IIA+ +      + L  +G DY Q  +   P      L
Sbjct: 643 DLGMKIIAEGVETREQAEILEALGSDYFQGYYFGRPQAAAGFL 685


>gi|90422107|ref|YP_530477.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104121|gb|ABD86158.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 743

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 143/561 (25%), Positives = 246/561 (43%), Gaps = 20/561 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIH 457
            +        L    +   +    +  +R+           G ++          L    
Sbjct: 180 ELKQREASFRLLFDSNPVPMIVCALADERILGVNDAAVEHYGYSAAEFSTLTIRNLQAFE 239

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                      D     R  R    ++   AD     + +  R +    G+    + +  
Sbjct: 240 AE----RPWTGDQSTDERAAR---TWKHVKADGSLIDLAVYSRQLL-YGGEPAVLLALM- 290

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE+K++   +   A  D LTG+PNR S   RL  +L  +    N +  V  + ID +K
Sbjct: 291 DITERKRAEMRLAFMAQHDGLTGLPNRNSLRKRLDEMLVHTRR-GNEKAAVHFLGIDNFK 349

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG AVGD +L  + RR+   L+  D++ RL+ + F I+    +    +   A  +
Sbjct: 350 GVNDSLGHAVGDKLLRGIARRLRSTLREEDVIGRLNSDEFAILQSGVSRPEDVVLLAKRL 409

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
             +I  P  L    + + ASIG A        S ++L +A++A+  AK         F  
Sbjct: 410 LHAIGEPFLLDGNSVVIGASIGIAMAPGDGDDSEKLLMSADMALARAKTETRGTFSFFEP 469

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            + +    R  I+ +L  A++N  L   Y P+I L +  I G EAL++W HP+ G +S S
Sbjct: 470 GMDARAQTRRKIESELRGAIQNDVLRPHYQPLIGLSNGRITGCEALVRWPHPERGMVSPS 529

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+  +I A+   +L+R   D  +W D      + + +N++        L   + 
Sbjct: 530 EFIPVAEDTGLINALGAQVLKRACEDAANWPD-----DVRVAVNLSPLQFRLGNLLSLVM 584

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T   P R++L  +E++++    +    L  LR +G+ +++DDFGT  S LSYL  
Sbjct: 585 DALKQTGLPPKRLELEITETLLLEKSSQVIATLHALRALGVRISMDDFGTGYSSLSYLRS 644

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S + G    R   AI+RSII +   +  TI A+ +  E ++  L   GC 
Sbjct: 645 FPFDKIKIDQSFVRGLCTNRELQAIVRSIISLGMGLGVTITAEGVETESELSWLRAEGCH 704

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q    ++    + I+ LL 
Sbjct: 705 EAQGFLFSAARPNSEIIDLLS 725



 Score = 41.5 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 17/155 (10%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           V++   A            ER   A+      +   D     +      A I    +   
Sbjct: 46  VVRKRAAADAAIAEARKSHERLREAIDILPQGIVFLDAEGRYILWNKKYAEIYNRTADLF 105

Query: 446 HG---PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHWMII 497
                 I      +   D        + ++  R  +L     ++E  +  +D +   +  
Sbjct: 106 QPGVKMIDTLRVGVARGDYPEALGHEEEWMAERMAKLFQPGERHEQLI--SDGRCIQIEE 163

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           R+     ++G     IG+  DITE K+        
Sbjct: 164 RMT----ADG---GIIGLRIDITELKQREASFRLL 191


>gi|312879090|ref|ZP_07738890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Aminomonas paucivorans DSM 12260]
 gi|310782381|gb|EFQ22779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Aminomonas paucivorans DSM 12260]
          Length = 675

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 127/592 (21%), Positives = 248/592 (41%), Gaps = 21/592 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           A   G +++V +   T           ++ +  + +  +L +          D     ++
Sbjct: 100 APFEGSLVLVKVRDLTEESRTRERLAATETLLEEMDECALVM----------DREGKVLS 149

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P +    G A   +    R     I      +                + E R R  D
Sbjct: 150 MNPALLRCTGFARDELLD--RAGFDLIDP---KSVPAETIRCSLRENAFWEGEVRTRRKD 204

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                  IRIR + +  G    Y+G+  D++ QK+    +    + D LTG+PNR  FLD
Sbjct: 205 GSTFPQRIRIRALQDEEGTPQGYLGVGVDLSTQKEQEARLAWQVYHDGLTGLPNRHLFLD 264

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL   L  +  +D     V+++D+++++ IN +LG   GD +L  +TRRI E ++  D +
Sbjct: 265 RLNLELQRARRNDR-SLGVLLLDLNRFRDINALLGHREGDRILTLVTRRIQEHVRSADTV 323

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL GN F +++        +A  A  +  S   P+    + + V  S+G A        
Sbjct: 324 ARLDGNTFALVVADATTPASLATLADRILASFREPLEYGTQGLVVGVSLGLALAPGDADG 383

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
           + E+L  A  A+  AK  GG+    +             ++  L  A++   + L Y P+
Sbjct: 384 AEELLDKASQALRKAKADGGSRCVFYNKELHNRFARRILLENGLRRAIQERRMTLHYQPL 443

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +      +  +EAL++W   K   +  ++F+ +AEE  ++  +  ++ +        W  
Sbjct: 444 VNPETNRVQAVEALLRWPTGKGTFVPPADFLPVAEETGLMIPLGEWVFQEACAQAARW-A 502

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
              + P+ + +N++  +L   +    ++  ++ +  SP  + +   E+ ++   E +  L
Sbjct: 503 SGPVGPLPVSVNLSGTELRHGQPLRTIREALASSGLSPELLVVEICENALLEEREAAESL 562

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905
              LR +G+ + +DDFGT  S L+YL     D +K + S +T   +     A++ +I+ M
Sbjct: 563 FRELRALGVKVFIDDFGTGYSSLAYLRDFSLDGLKVDKSFVTRLPQDSRDLALVSAILEM 622

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +    + + I      + +  +G   IQ    + P     +  LLK + 
Sbjct: 623 ARALGLETVVEGIETPEQRQAVQGVGYTCIQGFLYSRPQAPLQLEALLKAKN 674


>gi|162148059|ref|YP_001602520.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786636|emb|CAP56218.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 700

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/622 (21%), Positives = 266/622 (42%), Gaps = 44/622 (7%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           ++  + +              +  A     V     +  T           ++ I  D  
Sbjct: 101 VLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHET----AEELRKANRKILRDKL 156

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWL--------PYI 456
                V      +    +  DR+         + G     +                  +
Sbjct: 157 FMDTIVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALV 216

Query: 457 HIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           H     R+     L                +R        +  R   +++  GD    + 
Sbjct: 217 HPEGTRREGVSESL----------------LRNRAGDMRAVATRYVTIADERGDARWELC 260

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +A+D+TE++++ + +   A  D LTG+ NR  F  RL  +             ++ ID+D
Sbjct: 261 VADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVA-----GHEAILLCIDLD 315

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND+ G A GD +L  +  R+    +  D++ARL G+ F II  +     ++A  A
Sbjct: 316 YFKTVNDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRA 375

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++I+ P  +  + + + ASIG AS+ +   +S  + ++A++A+Y AK  G N   S
Sbjct: 376 GEIVETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADIALYKAKALGRNCFHS 435

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    S    ++  + ++L  A+ +S++ L + P+  + D +I   EAL++W+HP  G I
Sbjct: 436 FDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAACEALVRWNHPVRGMI 495

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  +  ++L    R+ + W      P + + +N++     ++    
Sbjct: 496 PPDQFIGLAEENGLIHELGEWVLRAACREAVCWP-----PHVKVAVNVSPVQFRNSRFMA 550

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q+ + +    P R+++  +E++ + N   +R +L +L  +G S+ LDDFGT  S LSY
Sbjct: 551 IVQSALMEAGLVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSY 610

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L    F  +K + S +    EK  + I+++I+ +A++++    A+ +  +     L  MG
Sbjct: 611 LRLFSFQKIKIDRSFVKELPEKSASGIIQAIVSLAQSMDIPTTAEGVETQEQWARLHAMG 670

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C   Q   +  P    +I + L
Sbjct: 671 CSEAQGFLLGRPEPVAAIRERL 692


>gi|85708868|ref|ZP_01039934.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
 gi|85690402|gb|EAQ30405.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
          Length = 730

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 143/544 (26%), Positives = 250/544 (45%), Gaps = 18/544 (3%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W+ D        +P     LGL +  + G            D           + +R 
Sbjct: 46  WFWETDASGQLTYLSPKACKSLGLEAEELLGKELTEFM---ATDNSGATGSTSRPLKFRL 102

Query: 477 GRLQYEFRV---RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                  R+     A N+  W  I   P  ++ G+     G A D+T+           A
Sbjct: 103 KSRSPISRLNVEITAANKEVWWEISAGPRLDAQGEFRGLHGTARDVTKALAEAREAEHAA 162

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+ NR      L + L            +M++D+D++KK+ND LG   GD++LV
Sbjct: 163 QFDSLTGLANRARMTHMLDSTLTAFKQSKR-SVAIMLMDLDRFKKVNDTLGHPAGDELLV 221

Query: 594 SLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            +  R+G +  +    + RL G+ F +I+   ++  ++AD A  M + ++ P  +     
Sbjct: 222 QVAERLGRIYEQRGGEIGRLGGDEFQVIIPDMDDRGELADLANKMVQMVSQPYTIAGTRA 281

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKED 710
            +  SIG A      I +SE++K+A+LA+Y AK  G    + +     +    R  I++D
Sbjct: 282 IIGCSIGIAVAPYDGIDASELIKSADLALYSAKDAGRGQFKFYSAELSAEADFRQRIEDD 341

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ N EL + Y PI+     ++  LEAL++W+HP  G +S ++F+ +AEE  MI  I
Sbjct: 342 LRDAIANDELAVHYQPIVDARTHKVSCLEALLRWEHPHRGFVSPTDFIPVAEEQGMIGEI 401

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L ++  D+         P I   +N+++           ++ +I  T   PSRI+L
Sbjct: 402 GEWVLRKVCDDLAHCP-----PEIRAAVNVSAIQFQGENFVGMVKEVIQDTGIKPSRIEL 456

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV +G+ E +     +L++IGI L+LDDFGT  S LSYL   PFD +K + S + G
Sbjct: 457 EITESVFVGDLEETIAQFKKLKRIGIRLSLDDFGTGYSSLSYLQNAPFDKLKIDQSFVRG 516

Query: 891 S---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     ++ +I+ MA  +    +A+ +  + +   + + G   +Q    +  L F 
Sbjct: 517 CASEDANNGILVAAIVSMASAMGMETVAEGVEAKDEYNMVVQHGAGLLQGYLFSGALTFE 576

Query: 948 SILK 951
            +++
Sbjct: 577 QLME 580


>gi|251772113|gb|EES52683.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum ferrodiazotrophum]
          Length = 855

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 135/576 (23%), Positives = 271/576 (47%), Gaps = 20/576 (3%)

Query: 393 TGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
               ++ I S+    R       + + +   D  R  V   P      G       G   
Sbjct: 267 GRDVTERIRSEEVLRRYRHIFENAKEGILLMDESRKIVDVNPAFTATTGYTRDEAIGRNP 326

Query: 451 NWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                +H   +D  F   + + +  R G  + E   R    + +   + +  +      I
Sbjct: 327 ---NMLHSGRQDLRFYESMWASID-RDGFWEGEIWNRRKSGEAYCEWLGVTAIKKEE-RI 381

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             YIGI +DIT++K++ + I+  AF D LTG+PNR++F +R+  +L+  + + +LR  V 
Sbjct: 382 SGYIGIFSDITKRKEAEDRIVHMAFHDALTGLPNRRAFRERIGEVLERRSREPDLRFAVG 441

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K++ND +G + GD++LV ++ RI E L+    L+RL G+ FG++L+  +    
Sbjct: 442 ILDLDGFKEVNDRMGHSAGDELLVLVSLRIKESLRSTGTLSRLGGDEFGLLLVGPDLED- 500

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +  +++ P  +    + ++ S+G       +     +L +A+LA+Y  K R G
Sbjct: 501 --VTFDRIVSALSEPFEIGGERVEISGSLGVTFSPPDRGDVDPLLSHADLALYRVKTREG 558

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    F+        +R  IK +L  A+   EL L Y P + ++   + G+EAL++W+HP
Sbjct: 559 NGWTPFQEEMEEALENRHRIKNELVRALSEKELVLHYQPQVDMVSGAVTGVEALVRWNHP 618

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G +    F+ +AE+  +I ++   ++E        W  +     + + +NI ++  L 
Sbjct: 619 KRGLLFPESFINVAEKSDLISSLGRSVMEEALAQQERW--KTGGLDLRVSVNIGARHFLS 676

Query: 808 NELCEGMQALISKT---LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +     + A +S+       P  +++  +E+  + +  +++ ++ R  + GI ++LDDFG
Sbjct: 677 DNFLADLDAALSRHCRKGICPVTLEIEVTETEALKDLSKAQKIIKRCLETGIVVSLDDFG 736

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  + L+ L  +    +K +   +     ++K  AI+ S++ + + +   ++A+ I  E 
Sbjct: 737 TGQASLTSLQRLSVGEIKIDKGFVGKIQDSDKDRAIVSSLVVVGRMMGIDVVAEGIETEA 796

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           D   L  MGC   Q   +A P+   ++   + +  P
Sbjct: 797 DGLLLIGMGCRVAQGYAIAKPMPAEAVPAWIADWTP 832



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/125 (8%), Positives = 34/125 (27%), Gaps = 6/125 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR- 465
               +      V+     R           + G  +  + G        ++ ++++  + 
Sbjct: 30  LKALLDNVLAGVFLVTPNRGIRDVNRRGLFLFGYEAEELVGQS---TRLLYPDEKEFLQV 86

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L +           +      + +  W  +    +    G+   ++    D+TE+   
Sbjct: 87  QNLYAKASGDTPTSLEDVPFVRKNGERIWADLSASRVR--VGEEDLFVVTVLDVTERHHL 144

Query: 526 LEGIL 530
            +   
Sbjct: 145 QDEKQ 149



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 12/154 (7%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L   TV+          +   +  ER +L +    D VW  D         P    + GL
Sbjct: 130 LFVVTVLDVTERHHLQDEKQLALDERNTLIM-ALPDGVWLKDGNGAWRIVNPAGLALFGL 188

Query: 441 A-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY------RRGRLQYEFRVRAADNQFH 493
           +      G     L  ++              +        R         V A D   H
Sbjct: 189 SGRTDWIGKTERELARMNP----PLAAAHLGCLTTDEEAWVRGSSTDATEPVVAPDGAIH 244

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +  R  P+ N +G     + I  D+TE+ +S E
Sbjct: 245 LIESRKIPLFNEDGSRKSLVVIGRDVTERIRSEE 278


>gi|62289191|ref|YP_220984.1| sensory box protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699128|ref|YP_413702.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023462|ref|YP_001934230.1| PAS-associated C-terminal domain protein [Brucella abortus S19]
 gi|254690514|ref|ZP_05153768.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 6
           str. 870]
 gi|254696639|ref|ZP_05158467.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254731547|ref|ZP_05190125.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 4
           str. 292]
 gi|260546486|ref|ZP_05822226.1| PAS-associated domain-containing protein [Brucella abortus NCTC
           8038]
 gi|62195323|gb|AAX73623.1| sensory box/GGDEF domain/EAL domain protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615229|emb|CAJ10176.1| PAS domain:GGDEF:PAS-associated C-terminal domain:PAC motif:EAL
           domain [Brucella melitensis biovar Abortus 2308]
 gi|189019034|gb|ACD71756.1| PAS-associated C-terminal domain protein [Brucella abortus S19]
 gi|260096593|gb|EEW80469.1| PAS-associated domain-containing protein [Brucella abortus NCTC
           8038]
          Length = 703

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EA I+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTCYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|256046006|ref|ZP_05448878.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563286|ref|ZP_05833772.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|260153302|gb|EEW88394.1| PAS domain-containing protein [Brucella melitensis bv. 1 str. 16M]
          Length = 703

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTGDSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|295699665|ref|YP_003607558.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295438878|gb|ADG18047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 667

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/542 (25%), Positives = 245/542 (45%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + GL    + G    W  ++  +D  +    + +    R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGLKEEDIIGR-SVWTLFMSSDD-GSVSNQVSAHFFNRGEPYEI 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R++    +  ++       S S  +    I    DITEQ+ + E ++  A  D LTG+
Sbjct: 187 ERRIKTVHGERLFLFRNKFVRSGSGIEDQFLICSGTDITEQRLAQERLIEQATTDPLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  +R+   ++ +A        V+ +D+D +KK+ND  G   GD ++  ++  I  
Sbjct: 247 ANRNAIQERIQIAIEQAA--PGETVGVLFLDLDNFKKVNDHYGHVFGDRLICDVSDAIRN 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++ ++  + D A  +   + MP  +   E+    SIG A
Sbjct: 305 CLNPGDSLARLGGDEF-IVLAAKGSAHGLEDIAQRILDRMRMPFAVGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            W     T   ++++A+ AMY AK  G      F     R   + + +  +L   +E  +
Sbjct: 364 RWPEHGETLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRRVAEFMWLDTNLRRGLEEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y P + L    + G EAL++W+ P+ G I  +EF+  AEE  +I  +  +++E  A
Sbjct: 424 FALHYQPKLNLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMETAA 483

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           +    W+       + + IN++++ L D  +       +      P  I L  +ES ++ 
Sbjct: 484 KQAARWKAAGYD--LRVAINVSARQLTDTAVVRHFTEALQHASLDPCLIDLELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           N   +  L+ + R++G  + LDDFGT  S LS LG IP D +K + S            A
Sbjct: 542 NEAAAIELIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFTRSIHADMKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ ++  ++A+ I  E +   +  +G DY+Q    A P+      + L +R 
Sbjct: 602 LVRSMVAVAQELDFQVVAEGIETEAEEAFMKGLGVDYVQGFLYARPMPATDFERWLLDRR 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|237814680|ref|ZP_04593678.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260756073|ref|ZP_05868421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 6 str. 870]
 gi|260759297|ref|ZP_05871645.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 4 str. 292]
 gi|260761019|ref|ZP_05873362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 2 str. 86/8/59]
 gi|237789517|gb|EEP63727.1| diguanylate cyclase (GGDEF) domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|260669615|gb|EEX56555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 4 str. 292]
 gi|260671451|gb|EEX58272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676181|gb|EEX63002.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 6 str. 870]
          Length = 709

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EA I+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTCYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|145593909|ref|YP_001158206.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145303246|gb|ABP53828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Salinispora tropica CNB-440]
          Length = 731

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/582 (22%), Positives = 254/582 (43%), Gaps = 19/582 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     Q +     R      G+   +    +    +      A +LG     +    RN
Sbjct: 146 ARDEVEQALRDSEARFRAVFSGAAIGIGIGLVDGQIIDVNQVFADMLGYTIEEL--RQRN 203

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H +D      +    V  +R  ++ E R    D    W  + +  + + +G    
Sbjct: 204 VSSLFHPDDAAGMWELYQQLVDGKRDSVRVEKRYYRKDGSAVWTDLAVSLVRHDDGHPRF 263

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  DIT++ +  + +   A  D LTG+PNR  F + L  + D +         V  +
Sbjct: 264 TVAVVEDITDRYELQQRLRFQALHDPLTGLPNRTLFFETLGVVFDNAGA--GRPVGVCFL 321

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKI 630
           D+D +K +ND LG  +GD +LV +  R+ + +     ++AR+ G+ F I++    +   +
Sbjct: 322 DLDGFKAVNDSLGHDLGDQLLVEIADRLSDCVAGSGHLVARMGGDEFVILVDDGESLDDV 381

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A A   ++A PI + + ++ V+AS+G      +    SE++K A+  +Y AK  G  
Sbjct: 382 VSVAEAALAAVAAPIRIGDHQLMVSASVGIVECPVNTTDPSELMKAADTTLYWAKAEGRG 441

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +       +     +   L  A+E  E  L Y PI+ L+D  +  +EAL++W HPK
Sbjct: 442 RWAVWDRERSAREIARSTLAAGLPTALERDEFVLDYQPIVSLLDGSMRAVEALVRWQHPK 501

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +  ++F+ +AEE  +I  +  ++L +  RD  +WR +     + + +N+A++ +   
Sbjct: 502 LGLLGPAQFIGLAEETGLIVQLGEWVLRQACRDADAWRREFPEARLVVSVNLAARQVEHP 561

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            + + +   ++ +      ++L  +ES VMG        L RL  +G+ L +DDFGT  S
Sbjct: 562 AIVDMVAGALTDSGLPAELLQLELTESAVMGTAGEPLRALHRLAGLGVGLAIDDFGTGYS 621

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS---------TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            L+YL  +P   +K  G  + G          + +   I+ +++ +A+ +   + A+ + 
Sbjct: 622 NLAYLRRLPIRCLKLAGPFVEGLREGVTETATSHRDEQIVDALVRLARALGLLVTAEAVE 681

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK---ERFP 958
             +  + L  + CD  Q     +P     I   L+    R P
Sbjct: 682 TGVQAERLRVLRCDTGQGYWFGAPGPAGEITARLRGAAARNP 723


>gi|88703880|ref|ZP_01101595.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88701707|gb|EAQ98811.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 910

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 127/580 (21%), Positives = 268/580 (46%), Gaps = 8/580 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q   A    +  +  +    S+A   +G   W  +        + ++  +LGL       
Sbjct: 327 QQRQALESLNVELEEERSNLSVAQRMAGLGYWRCNPENGEFEASSELLHLLGLPPDHEFD 386

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   IH + RD F   L S    +   ++  +R  +  +   W+   IR  S+ + 
Sbjct: 387 CSGFADTVIHPDSRDQFARDLASC-QRKDDSVENVYRAASPHHDEVWIRQFIRVESDPSI 445

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                +    D++ Q+ + + I   A+ D+LTG+  R    +RL  ++  +         
Sbjct: 446 KGFHLVAAVQDVSRQRLAEQEIRRLAYFDSLTGLSQRGYLFERLHEMVRTARRRQEG-FA 504

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+DK+K+IND LG   GD++LV++  R+    +  D +ARL G+ F ++L + ++ 
Sbjct: 505 VLFIDLDKFKEINDSLGHDAGDELLVTVASRLRAAARESDFVARLGGDEFCMVLDNVSSE 564

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           + +A+ A  +   ++  + +    +T  AS+G A +      +  ++  A+ AMY AK R
Sbjct: 565 VDVAEVAQRLLDQLSAAVEIHGTTVTPMASVGIAIYPVDGEAAESIMNAADNAMYAAKRR 624

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +              +R+ +  D+  AV+  E  + Y P I L    I G EAL++W 
Sbjct: 625 GDHSYLFHEHEISAEARERLRMSRDIRRAVKEDEFVVHYQPQISLESGAIEGWEALLRWQ 684

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S+  F+   E + ++  I  ++++ ++  +  W+ +   P   + INIA + +
Sbjct: 685 HPERGLLSAYAFIDDIERIGLVSDIGRWVIDSVSSQLAQWQREE-RPHTRVSINIAPRHM 743

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +  +   ++  + +   S S++++  +E   + + E  R     +R +G+ + +DDFGT
Sbjct: 744 SEGTVARDLREAMGRHGISASQLEIEITE-AGIQSGEEIREATLAVRALGVEIAIDDFGT 802

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L+ L  +  D++K + S +    +      +L SII + K+    ++A+ +  +  
Sbjct: 803 GYASLASLRSLTIDSLKVDRSFIQFATTNAVDRRLLSSIIDLGKSFGYRLVAEGVETQEQ 862

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           ++ L  MGC+ +Q    +  +     ++++ +R    +++
Sbjct: 863 LELLRTMGCELVQGYLFSQAVPAAEAVEMMDDRATGSQSS 902


>gi|302545149|ref|ZP_07297491.1| developmental regulator MorA [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462767|gb|EFL25860.1| developmental regulator MorA [Streptomyces himastatinicus ATCC
           53653]
          Length = 547

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/544 (24%), Positives = 257/544 (47%), Gaps = 17/544 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D   + +   P +  +LG     +       L  +  +            +   R R+ 
Sbjct: 4   IDREGNVLDANPALGALLGADPAQLAARGAAALAELRED--ARAWNDYREVLLGHRERMT 61

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
              R+  +D    W  I +    +S       +    DI++++     +      D +T 
Sbjct: 62  CTRRLHHSDGHALWAEITVEQAPDS----CSLLLSMADISDRRDLQGRLRHLQMHDPVTR 117

Query: 541 IPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           +PNR  F +RL   L+  A       R  +  +D+D +K IND LG  VGD +L ++ +R
Sbjct: 118 LPNRNLFFERLAAALEAGAYDRAGTGRIGLCYLDLDGFKAINDTLGHRVGDRLLRAVAQR 177

Query: 599 IGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           + E     D ++ARL G+ F +++   + + ++ + A ++  ++  P ++  + ++V+AS
Sbjct: 178 LTECAAPGDHLVARLGGDEFALLVRESSGTEQVCELARSVLAALQRPFDVGGQRLSVSAS 237

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAV 715
           IG     ++   ++ +++ A+  +Y AK  G      F             +   L  AV
Sbjct: 238 IGVVERPAAGTHTTWLMQAADTTLYWAKEDGKARWTLFDPERNAHRMTRQALSSTLRPAV 297

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  E  L Y P++ L+D  + G+EAL++WDHP++G +S + F+ +AEE   I  +  ++L
Sbjct: 298 EREEFVLDYQPLVGLVDGVVRGVEALVRWDHPQFGRLSPNRFVSLAEENGAIVPLGRWVL 357

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               R   +W+      P+ + +N+A + + D++L   +  ++++T   P  ++L  +ES
Sbjct: 358 RTACRQARAWQQAHPRHPLVVSVNVAVRQVWDSDLVADVGTILAETGLPPRLLQLELTES 417

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG----- 890
            VMG+  R    L +L  +G+++ +DDFGT  S L+YL  +P  T+K +GS + G     
Sbjct: 418 AVMGSAGRPLQALQQLSDMGVAIAIDDFGTGYSNLAYLSRLPVSTLKLDGSFVQGFRAEE 477

Query: 891 -STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   I+R+++ +A  +  T++A+ +      + L R+GCD  Q    + P+  + I
Sbjct: 478 HPNPADETIVRALVELAHRLGLTVVAECVESAEQAERLGRIGCDTGQGWFYSRPVPPDRI 537

Query: 950 LKLL 953
             +L
Sbjct: 538 PPML 541


>gi|17988014|ref|NP_540648.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|265992417|ref|ZP_06104974.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983758|gb|AAL52912.1| diguanylate cyclase/phosphodiesterase domain 2 (eal) [Brucella
           melitensis bv. 1 str. 16M]
 gi|263003483|gb|EEZ15776.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella melitensis bv. 1 str. Rev.1]
          Length = 709

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 244/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EALI+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEALIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTGDSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|291566273|dbj|BAI88545.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 655

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/439 (30%), Positives = 229/439 (52%), Gaps = 5/439 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +++    ++  +  D LT + NR  F+  L  +++ +  D   +  V+++D+D++K IND
Sbjct: 174 RREEARLLIYKSTHDGLTDLYNRSYFMRELDEVVERAKEDPEYQFVVLLLDVDRFKIIND 233

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L  +  R+ E +     +ARL G+ F I+L   NN  +I+  A  ++  +
Sbjct: 234 SLGHQVGDRLLEGVGERLRECIPPWHTVARLGGDEFAILLDDLNNLNQISQTAQNIQSYL 293

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
             PI L E+E+  T SIG A    S     E+L++A+ A+  AK +G      F   +  
Sbjct: 294 QQPIVLGEQEVFSTVSIGIAISNVSYGNGKEILRDADTALSQAKSKGKACHVIFNPTMHR 353

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              DR+ ++ DL  A+E  EL L Y PII L   E+VG EALI+W+HPK G +S S+F+ 
Sbjct: 354 QAWDRMQLENDLRHAIERQELQLHYQPIISLETLEVVGCEALIRWEHPKRGWVSPSQFIP 413

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALI 818
           IAEE  +I+ I  ++L    + +  W+       P F+ +N+++  L + +L   +Q+++
Sbjct: 414 IAEETGLIQPIGEWVLRSACQTLHRWQLMFPDGQPAFMSVNLSTYQLTNPQLVNKVQSIL 473

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P R+KL  +ES +    E     +  L ++GI L +DDFGT  S LS L + P 
Sbjct: 474 EETGCDPCRLKLELTESTIAEYAEIVVPQMRELSQLGIKLCIDDFGTGYSSLSRLYHFPI 533

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K + S + G  E   ++ I  +I+ +A  +   +IA+ +     +  L   GC   Q
Sbjct: 534 HTLKIDRSFIEGIDESHDQLKIAYAIVNLAHTLGLEVIAEGVETPEQMAVLQAWGCQLCQ 593

Query: 937 DSHVASPLGFNSILKLLKE 955
               +  +   ++ K L +
Sbjct: 594 GYLFSKAVDSQNMDKFLSQ 612


>gi|149374713|ref|ZP_01892487.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Marinobacter algicola DG893]
 gi|149361416|gb|EDM49866.1| Putative diguanylate cyclase (GGDEF)/ phosphodiesterase (EAL) with
           PAS/PAC and Chase sensors [Marinobacter algicola DG893]
          Length = 908

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 143/602 (23%), Positives = 268/602 (44%), Gaps = 14/602 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L +D   P ++G  ++I +L+   V+  +        G      R      G+ ++   
Sbjct: 310 YLASDPRPPIVLGCGIVISLLMFLFVLTMIRGRIMAQIGAG----RYRAITEGAANVTLV 365

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D        +P    ILG     ++G        +H  D    ++  D  V     ++ 
Sbjct: 366 LDRDGTPRYASPSSQDILGFDPDKVYG--LELESLVHAEDWPQLKSGFDEAVKSPGKQMP 423

Query: 481 YEF-RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
               R+R +  Q+  M      M    G +   +    D+T+ K +   +   AF D LT
Sbjct: 424 VIRGRIRDSQGQWRDMEGTFTAMLTVPG-VNGVVLSLRDLTQLKAAQTELHRLAFYDPLT 482

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NRQ F DRL  ++  S   +     +M +D+D +K+IND LG   GD++L  +++ +
Sbjct: 483 GLANRQLFRDRLNHVVRRSRRSEEP-AALMFLDLDGFKRINDTLGHDSGDELLKQVSQWL 541

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              ++  D +ARL G+ F ++L   +        A A+ + +   I L + E+ +T SIG
Sbjct: 542 TGCVREEDSVARLGGDEFVVLLSRISGPDAAGKVAEAILRRLCQRIRLNDHEVGITVSIG 601

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVEN 717
                        ++K A+LAMY AK  G N  + F  +        + +  +L  A+E 
Sbjct: 602 ITMIPHDSEDPGTLMKYADLAMYRAKELGRNTYQFFTPAMNIKAARRLLQQEELATALEG 661

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
               L Y P + L  E ++G+EA ++W HP+ G +S+ +F+ +AEE  +I  +    L +
Sbjct: 662 DRFVLHYQPKVDLESERVIGVEAFLRWHHPEKGLVSAQQFITLAEETGLIIRLGELALRQ 721

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               + +         + + +N++ + L D+   + M+ +I++T  SP R++L     ++
Sbjct: 722 ACIQVQALERA-GFESLKMAVNLSVRQLTDSGFLDMMRQVITETGVSPERLELEMPAELL 780

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
             +P   R LL  L  +G+ L LDDFGT    L  L  +P D +K +   +         
Sbjct: 781 NEDPRMLRELLVSLHDMGVCLILDDFGTGSCSLVALQQLPLDVIKIDHRFIRDIPYNVSA 840

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  ++I +A+ +  T++A+ +     +  L   GC   Q +  + PL  ++++  L  
Sbjct: 841 TDVASAVIALARKLHLTVVAEGVETPQQLSFLRSAGCAQCQGNLFSYPLDEDALIGFLIR 900

Query: 956 RF 957
           ++
Sbjct: 901 QY 902


>gi|295688296|ref|YP_003591989.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295430199|gb|ADG09371.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
          Length = 610

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 216/435 (49%), Gaps = 10/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++ +  I   A  D LT +PNR  F   LT  L   A   + +  V  ID+D++K +ND 
Sbjct: 134 RRGVAQIARLAHYDPLTDLPNRVLFQKSLTEALARRARKGD-QLAVHFIDLDRFKTVNDT 192

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  +GD +L     R+   ++  D +ARL G+ F ++     +       A  +  ++A
Sbjct: 193 LGHPLGDALLREAAERLRRCVREGDTVARLGGDEFAVVQTGLTDMAGATRLAARIVTAMA 252

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P +L   ++ + AS+G ++         E+LK A++A+Y AK  G      F   +   
Sbjct: 253 APFDLAGHQVVIGASVGVSAAPYDGEDVDELLKKADMALYRAKGDGRGAFHFFEQAMDEQ 312

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  ++ DL  A+++ E  L Y P+  L DE + G EAL++W HP+ G +S ++F+ +
Sbjct: 313 LQARRALELDLRRALQDGEFELFYQPLYHLGDERVTGCEALLRWRHPERGMVSPADFIPL 372

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE+ +I  +  ++L     +   W D      + + +N++     D  L   + + ++ 
Sbjct: 373 AEEIGLIVPLGDWVLRAACAEAARWPDH-----VRLAVNLSPAQFRDRSLVATVVSALAT 427

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +     R++L  +ESV++ +   +  +L  L+ +G+ +++DDFGT  S LSYL   PFD 
Sbjct: 428 SGLPAQRLELEITESVLLQDNAANMTMLHDLKALGVRISMDDFGTGYSSLSYLRSFPFDK 487

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +         +AI+++++ +  ++  T  A+ +  +  +  L   GC  IQ  
Sbjct: 488 IKIDQTFVRDILHDSDALAIIKAVLDLGASMGVTTTAEGVETQAQLDALRGQGCAEIQGY 547

Query: 939 HVASPLGFNSILKLL 953
            ++ P   + I K+L
Sbjct: 548 FISRPAPADEIAKML 562


>gi|254502389|ref|ZP_05114540.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11]
 gi|222438460|gb|EEE45139.1| hypothetical protein SADFL11_2428 [Labrenzia alexandrii DFL-11]
          Length = 729

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 126/536 (23%), Positives = 228/536 (42%), Gaps = 12/536 (2%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGR 478
            D     +     +  + G +   + G   + L   H        F   + S        
Sbjct: 191 TDRAGRILDANDALVALSGYSRVELVGSPHSLLNSGHHPPEFWHAFWQQISS-----GQT 245

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            + E   R      +W+   + P+  ++G I  YI +  DITE+K++   I   A+ D L
Sbjct: 246 WRGEICNRTKTGDLYWLDSIVAPLKGADGRIENYISVRFDITERKRAEARIHQLAYFDTL 305

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR   L  + + L     +D +   +  ID+D +K +ND  G A GD VL    +R
Sbjct: 306 TGLANRDGTLAHIRSCLCGPGGEDRI-FALFYIDLDHFKAVNDKRGHATGDRVLAIAAQR 364

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  +      L RL G+ F           +    +   + ++  PI++   +  +  S+
Sbjct: 365 LQSVCPTDVFLGRLGGDEFAAFCP-VKTKQEAQAVSDLFQAALLEPIDVSGEQFALGLSV 423

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
           G A        +  +L  A++AMY AK  G G+   +  ++     R  + +   LA+E 
Sbjct: 424 GIALAPYHAREADALLSRADMAMYQAKATGAGSVFYTQSLADALHRRQRVSDRFKLALEA 483

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
              +LV+ P + L D    G E LI+W   + G +  SEF+ IAEEL +I  +  ++L +
Sbjct: 484 GLFHLVFQPQVHLEDGSFEGCEVLIRWRDEELGAVPPSEFIPIAEELGLITKLGEWVLAQ 543

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R +  W  +    P  + INI++++L+ +     ++  ++     P+  +L  +E  +
Sbjct: 544 TCRHMSDWAARGLSVPGRVAINISAQELMSSGYVANLKETVASFGCDPNAFELEITEHGL 603

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           M +    +  L  L  +G  + +DDFGT  S LSY+ +   D +K + S +         
Sbjct: 604 MRDIWAGKETLNELEDLGFRIAIDDFGTGYSSLSYVKHFSADELKIDLSFVRDMMVDAAS 663

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            AI+ + I MA+ +    +A+ +  +     L  M C   Q  + + PL       
Sbjct: 664 YAIVAATIAMAEKLGMQSVAEGVETKEQADALKAMKCPIAQGYYYSRPLEAQDFED 719


>gi|206601953|gb|EDZ38435.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 878

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 130/618 (21%), Positives = 269/618 (43%), Gaps = 14/618 (2%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
                     +   + +   ++  +          +   T I   ++          D  
Sbjct: 266 FGVASASAFPIRKGEEIVALLVILSNRPNFFETESIGLLTRIAEAMSYALDDFERGQDLF 325

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-- 463
             SL      + ++  D+             + G + G + G   + L        +   
Sbjct: 326 LTSLVFDAVPEGIFITDVEGRITRVNEAFCRLSGFSFGELLGREADTLT----AGLEKGI 381

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +  R G ++  F +   D   + +   I  +     D    + +  D+T + 
Sbjct: 382 LCASIRDAIDQR-GTVEGIFELIRKDASSYMVEATITLVEEPGRDSRHVVLLLKDVTAKM 440

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I   A  D+LTG+ NR + ++RL   ++ S  +      ++ +D D +K IND L
Sbjct: 441 ERERQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNQGA-MALLFLDFDDFKGINDTL 499

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD  L  +  R+   ++  DI+ARL G+ F +++  E++  KI  FA  +   +  
Sbjct: 500 GHSAGDSFLKVIGHRLSGSVRPTDIVARLGGDEFVVVVSLESD-EKILSFAQKILDILGA 558

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+++  + +  + S+G A++     +  ++L+ A++AMY AK++G N  + F V      
Sbjct: 559 PVSIQSQTVQTSVSVGIATYPRDAESVEDLLRKADIAMYQAKNKGKNTWQFFNVEMEERI 618

Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R+  +++  L   ++    +L + P I +    +VG+EAL +W  P  G I  + F+ +A
Sbjct: 619 RLRFEQEQMLKTGLQEGAFFLHFQPQIDVFRRRLVGVEALARWPVPSGGTIGPASFIPLA 678

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I A   ++++   R I  W      P I + +N++S+          ++ ++S+ 
Sbjct: 679 EETGTILAFGEWVIQEAFRVIQFWSAS-GRPRIRVGVNVSSRQFWSPTFWTFLREILSRH 737

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +    +E+V+M +PE +   L  L+++GI + +DDFGT  S LSYL   P D +
Sbjct: 738 AELTRWLTFELTETVLMRDPETAGEQLSWLKELGIRIAIDDFGTGYSSLSYLSRFPVDEI 797

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +     + + + ++++II M K++   ++ +    E +++ L  +GC  IQ   
Sbjct: 798 KVSQEFVMRMAKSPRDLKLVKTIIQMGKSLRLNLVGEGAETEEEVRMLEGLGCHVIQGFA 857

Query: 940 VASPLGFNSILKLLKERF 957
           ++ PL  + +     +  
Sbjct: 858 LSRPLPVSEMESFWDQYL 875



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +G  + D +     V        +LG     +     +     H +D       +     
Sbjct: 34  AGIGIVDAET-GRYVFVNARWCKMLGYEPQEL--SRLSIRDVTHPDDWPKTEACIREAQE 90

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             R     E R    +    W  + +R   +         GI  D  ++K+
Sbjct: 91  GLRETYFVEKRFLRKNKTVFWGFLLVRSFRDPVTGNRLLNGIILDFDDKKR 141


>gi|145298007|ref|YP_001140848.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850779|gb|ABO89100.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 816

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 120/559 (21%), Positives = 251/559 (44%), Gaps = 10/559 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               + ++    + + +   D  R  ++  P    +       + G   +    +H    
Sbjct: 259 DKLRQANVVFDTTAEGIIIMDGQRQIISVNPAFCNMTQYEPDEIVGK--SLEAIMHPRRH 316

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +      + +         E      D  +      +  + +S  +   Y+   +DI+ 
Sbjct: 317 TDIDYPWHTLLPGSHA-WHGEMMCLRKDGDYFTSWQHVSAVYDSRHNTAHYVITFSDISA 375

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K+   +   A+ D LT + NR    +RL   +  +  +   +  ++ ID+D +K IND
Sbjct: 376 IRKAEAQLNHLAYHDPLTELGNRNLLQERLELEIKTAQLNRQ-QLALLFIDLDGFKLIND 434

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L  L  RI + L+  D+  RL G+ F +++       ++A  A  +   +
Sbjct: 435 NLGHRAGDQLLKLLAGRIRQSLRHNDVAIRLGGDEFLVLIPYFEQQDELAQLAEQLLARL 494

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
             P+ L   ++ ++ASIG A +     +   ++  A+ AMY AK +G N    +      
Sbjct: 495 REPVELEHEQVAISASIGIALYPEHARSPDALVSAADNAMYEAKSQGRNGYLFYSPDMAE 554

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ +++ L  A++  +L ++Y P+  L +  + GLEAL++W HP  G I+ + F+ 
Sbjct: 555 QTRERMSLEQGLLKAIDQHQLCILYQPMTDLANNRLSGLEALLRWQHPSEGMIAPARFIP 614

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I+ I  +++    +   +W       P  + +N++ +++      E + A+++
Sbjct: 615 VAEECGLIEQIGEWVMRTACQQGQAWLAAGLAVP-RLSVNVSVREMRAIGYVERVAAILA 673

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   R+++  +ES ++   + S  L  RL+ +G+ + +DDFGT  S LS L  +P D
Sbjct: 674 ETGFPAERLEIEVTES-IIQRVDHSLQLFTRLKALGVQIAIDDFGTGFSSLSLLKSLPID 732

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +    + +    + R+II +A ++   + A+ I  +   + L  + C   Q 
Sbjct: 733 RIKIDQTFVQALPDDKHSRELCRTIINLADSLGMAVTAEGIETQAQRQFLQSLHCQEGQG 792

Query: 938 SHVASPLGFNSILKLLKER 956
              + PL    +   L  R
Sbjct: 793 YLFSHPLTEPHLAAQLTPR 811



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R  LA+      VW+W +  DR+     +  +LG A+    G + N++        +  
Sbjct: 142 QRLQLAMSAGQIGVWEWHVAEDRLQFDGQVERLLGTAANQFQGGMDNFIKRFDPVSGEQL 201

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           RT L+         L         +    W+ +    ++ ++    R +G+ +D T++  
Sbjct: 202 RTALN-----GTAPLHLTLSYLGPNQMRGWVDLHADHVAATDTQGRRIMGVIHDATDR-C 255

Query: 525 SLEGILCNAF 534
           + E  L  A 
Sbjct: 256 NQEDKLRQAN 265


>gi|91776772|ref|YP_546528.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91710759|gb|ABE50687.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
          Length = 617

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 129/442 (29%), Positives = 236/442 (53%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++K++       A  D LT +PNR  F+DRL   L  ++   N +  ++ ID+DK+K 
Sbjct: 168 ITQRKQANL--FYLAHFDQLTKLPNRVLFMDRLAMTLAEASRT-NAQVGLLFIDLDKFKH 224

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND +G A GD +L++L   +    +  D +ARLSG+ F II+ S +    +      + 
Sbjct: 225 FNDSMGHAFGDQLLIALAGILARCSREMDTVARLSGDEFTIIVDSISGQKDLDILCWRIL 284

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++ +P  ++ REI ++ASIG A +      ++ ++  A+ AMY AK  G N    +   
Sbjct: 285 DALKLPQQIMGREIFISASIGTAIYPLDDEDANNLMIKADAAMYEAKRNGRNTYRHYAAG 344

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 DR+ ++ DL LA+E +E  L Y P I L   ++VG EALI+W HP+ G ++   
Sbjct: 345 MQLYSLDRMSLETDLRLAIERNEFELYYQPQIALDSGQVVGKEALIRWHHPQRGLLTPIH 404

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAEE  +I AI  +++    R   +W  +    P+ I +NI++     ++ C+ ++ 
Sbjct: 405 FIEIAEETGLIVAIGQWVISEACRQHQAWLQE-GFQPMRISVNISAMQFYQSDFCDMVEH 463

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T  +P+ ++   +ES+ M + +     L +L ++GI L +DDFGT  S LSYL   
Sbjct: 464 ILKETRINPAYLEFELTESMFMQDADAVVRTLHQLSRLGIKLAIDDFGTGYSNLSYLRKF 523

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S + G       + I+++I+ +A+++   ++A+ +  ++++      GC +
Sbjct: 524 PIDRLKVDQSFIKGIEREPINVEIVKTIVALARSMSLELVAEGVETDVELHWAESSGCTF 583

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q    + PL      + ++E 
Sbjct: 584 VQGYRFSQPLPAEKFTRWVREY 605


>gi|241766210|ref|ZP_04764110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241363709|gb|EER59086.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 589

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/597 (22%), Positives = 270/597 (45%), Gaps = 24/597 (4%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L+GG V ++       ++         +G   D E     +    D++++  +       
Sbjct: 4   LLGGSVWLLATARERALRLARGMTSELRGTRDDLE---STLNAIPDLLFELGLDGRIHHL 60

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
               A +L   +  + G        +  +        L +          +++R+  +  
Sbjct: 61  RHSRAALLPAPAQMLVGQ--RMQDIVAPDAAAGCLAALQAAHDT-GHSAGHQYRL-GSGG 116

Query: 491 QFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
              W  + I    N+  G+  R+I ++ DITE+K S       A+ D LTG+PNR+  LD
Sbjct: 117 DERWFELSIARKENAAPGEAPRFIALSRDITERKLSEARTYHLAYFDALTGLPNRRMLLD 176

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R+   LD +     +   ++ ID+D +K+IND  G ++GD +LV + +R+ +LL   DI+
Sbjct: 177 RMERSLDAARRAGQV-GALLFIDLDNFKQINDARGHSLGDLLLVQVAQRLVDLLAPGDIV 235

Query: 610 ARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
           ARL G+ F +++        +        A  +R ++  P  + +   + TASIG   + 
Sbjct: 236 ARLGGDEFVVLVHDLAGGMQDAGPAAMAVAETLRVALEAPYTIHQHLYSSTASIGITLFP 295

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
                  ++L+ A+ AMY AK  G N +  +  +      +R+ +++DL  A    +L  
Sbjct: 296 KPDEGVEDLLREADTAMYRAKDLGRNRIRFYEAAMQADVQERLTLEQDLKNAAAEGQLAA 355

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              P +      +VG E L++W+HP  G++  + F+ +AE   +I  +  +M+ +    +
Sbjct: 356 FVQPQVNAA-GVVVGGELLMRWNHPVRGSVPPARFIPVAEASGLILRMGDWMILQACETL 414

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
              +       + I +N++ +    ++  E M+ ++  T  +P+ + L  +ES+++ N +
Sbjct: 415 ARLQAAQRD--LSISVNVSERQFRQDDFVERMRGVLVSTGANPAHLILEVTESLLIENLD 472

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +   +  LR++G+  ++DDFGT  S L+YL  +P   +K + S +  +       AI++
Sbjct: 473 DTIARMTELRRLGVRFSIDDFGTGYSSLAYLKRLPLYELKIDKSFVQDAPHDPNDTAIVQ 532

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           SII +A+++   ++A+ +        L    C+ +Q      P     + + L  + 
Sbjct: 533 SIISVARHLNLHVVAEGVETRAQADFLVASQCNGLQGYLFGRPEP---LQQWLARQL 586


>gi|254456809|ref|ZP_05070237.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207085601|gb|EDZ62885.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 671

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 245/436 (56%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++K+   +   A  D+LTG+PNR +++D++T++++ +  +      ++ +D+D +K IN
Sbjct: 235 KERKARYELEYFANHDSLTGLPNRHAYIDKITSMVNKNKNN----FALIFMDLDNFKTIN 290

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  + +R+   +K  D+L+R  G+ F  +  +  + L I    I + + 
Sbjct: 291 DSLGHTLGDMLLQKVAKRLKNEIKEYDMLSRFGGDEFVFLFSNVQSELTIEKTMIKIHEV 350

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  L   E+  TASIG A +      +  +L+NA++AMY AK  G +    F     
Sbjct: 351 LKKPFILNTYEVYTTASIGIAIYPDDAQDAELLLRNADVAMYDAKQSGRSKYSFFNADML 410

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S+R+M++ +L  A+EN+EL+L++ P + L +E+IVG+EALI+W HP  G IS  +F+
Sbjct: 411 NLSSNRLMLESELHKALENNELFLLFQPQVSLWNEKIVGVEALIRWQHPTKGLISPLDFI 470

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  I  +++++    +  W+D  +M    + IN+++K +L  +L   ++A I
Sbjct: 471 PIAENSGLIMPIGEWIIDQACDQLALWKD-THMSEATLSINVSAKQVLHQDLYSYIEAAI 529

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      ++L  +ESV+M N   +  +L RL+K+G+S+ +DDFGT  S LSYL  +P 
Sbjct: 530 ERTKIDGRFLELEITESVIMENINETVRILSRLKKLGVSIAIDDFGTGYSSLSYLKKLPI 589

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +      +  IAI  +II M+K++   I+A+    +  I+ L    CD  Q
Sbjct: 590 DKLKIDREFIKDIPNDKDDIAITNAIISMSKSLSLKIVAEGPETKEHIEFLQNSKCDIAQ 649

Query: 937 DSHVASPLGFNSILKL 952
             + + P+    + KL
Sbjct: 650 GFYYSKPITIVEVEKL 665


>gi|222112018|ref|YP_002554282.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax ebreus TPSY]
 gi|221731462|gb|ACM34282.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax ebreus TPSY]
          Length = 630

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 131/552 (23%), Positives = 250/552 (45%), Gaps = 14/552 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDR 461
            ER   A+  + D +   D     +     + TI G  +  + G   + L  +H      
Sbjct: 70  LERA--AMDAAPDGIVLADRQGRILMVNAPMETISGYTNAQLCGQSIDLLVPVHARPE-H 126

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                        R   +  +  ++  D     + I +   S   G +   +    D+++
Sbjct: 127 GQHMQRYHQSPSRRPMGMGRDLWLQRRDGSQVPVDIALGHSSAHGGTV---VAFVRDVSD 183

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++    +   A  D LTG+ NR  F  RL   +   A   +    ++++D+D +K IND
Sbjct: 184 LRRLEARMHYQATHDTLTGLLNRWKFGQRLEQAIAEQAAAQSPPFALLLLDLDDFKAIND 243

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A GD VL  + RR+   L   DILARL G+ F ++L     + +    A  + +++
Sbjct: 244 GYGHAAGDQVLQEVARRLRGALGTGDILARLGGDEFTVLLPGVACATQAECVAARLMQAL 303

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +P  +   E+   AS+G A        ++ +L+ A++AMYHAKHRG  +   +  S  R
Sbjct: 304 CVPCRVQGFELNFGASMGIALCPQDAGDAATLLRYADMAMYHAKHRGRANFAFYAPSMGR 363

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               ++ + + L LA+    L L Y P + +    +VG+EAL++W  P+ G +S   F+ 
Sbjct: 364 KMAEKIQLHDRLKLALAYGGLTLHYQPQVEVATNRMVGVEALLRWHDPQLGEVSPERFVP 423

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  +  +++    R I +W  Q     + + +N++++ L   +L E +   + 
Sbjct: 424 VAEATGLILELGAWVMAAACRQIAAWERQG--MRLRVAVNLSAQQLRQTDLVEQVARNLR 481

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +ES  + +PE++  +L  LR +G+++ LDDFGT  S L+YL  +P  
Sbjct: 482 THHVPPELLELEVTESEALADPEQACQVLNELRALGVAVALDDFGTGHSSLAYLKRLPVS 541

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   M    ++     ++R+++ +A  +   ++ + +     ++ L  M C   Q 
Sbjct: 542 HIKVDREFMRNVPASGGDTTLVRAVVALAHTMGLRVVVEGVETREQLQFLREMQCACYQG 601

Query: 938 SHVASPLGFNSI 949
              A  L  + +
Sbjct: 602 WLFAKALSPDDV 613


>gi|330826273|ref|YP_004389576.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|329311645|gb|AEB86060.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
          Length = 887

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 147/679 (21%), Positives = 271/679 (39%), Gaps = 40/679 (5%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF--IWFIGLWMA 357
           + +       +A   L  +     +   +           L+ A  L++  +W       
Sbjct: 218 APWDAPERQGLAAPPLQEMGARGRHTGFWQARARLSGQPALVAARPLLYPDLWITASLPR 277

Query: 358 ITKRLDNDIIQPALVGGLVLIVILI---GFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            T          A+ GG +L    +   G     ++       Q +         AV   
Sbjct: 278 STALAAWKQDAAAVGGGALLFGACLVAAGILATVYLRRMHRARQSVAGAKATLDQAVGAM 337

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSM---HGPIRNWLPYIH--------INDRDN 463
                  D  R  V        +    +G++       R     +H         + R  
Sbjct: 338 VSGFVLLDPARRIVQWNRPFEEMFPWLAGTVAVGLPYRRVLETTVHYHLPGASAQDKRAW 397

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L      +    Q        +  F  +  R  P           + + +D+T+ +
Sbjct: 398 VERRLQQQRDPKGTHEQC-----LPNGHFIQITERATPE-------GGLVILFHDVTDLR 445

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   I   AF D LTG+ NR+  LDRL      +      R  V+ ID+D +K +ND L
Sbjct: 446 LAAAEIEQLAFYDQLTGLSNRRLLLDRLGQACAAAQRAGE-RGAVLFIDLDYFKTLNDTL 504

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMR 638
           G  +GD +L  + RR+   ++  D +ARL G+ F ++L         A       A  + 
Sbjct: 505 GHEMGDQLLQQVARRLQGCVRAGDTVARLGGDEFVVLLAGLPADAAEAALLARGVADKIV 564

Query: 639 KSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +  P  +  +    + S+G   +    + T+ E+LK A++AMY AK + G+ +  F  
Sbjct: 565 HLLGRPYQIAGQTYHGSFSVGATLFGELPQTTAGEVLKQADIAMYQAKAQRGSTLRFFEP 624

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 S+R  ++ DL  A+   +  L   P        +VG E+L++W HP  G +  +
Sbjct: 625 GMQAAISERAQLEADLQQAIGAGQFLLHLQPQYDGA-GAMVGAESLLRWQHPVHGLVPPA 683

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE+  +I  I  ++L      +  WR   ++  + + +N++++    ++  E + 
Sbjct: 684 RFIAVAEDSELIVPIGRWVLRSACELLARWRHAPHLRDLSLSVNVSARQFRQDDFAELVV 743

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+  T     R++L  +ES+V+ + E S   + RLR  G+   +DDFGT  S LSYL  
Sbjct: 744 RLLQDTGAPAHRLELELTESLVLEDVEDSIAKMHRLRVKGVRFAVDDFGTGYSSLSYLTR 803

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +     +     ++++I+ MA+N+E  ++A+ +  E     L R GCD
Sbjct: 804 LPLHRLKIDKSFVHHLGESHSDDVVVQTILGMARNLELEVVAEGVETEAQRAFLARHGCD 863

Query: 934 YIQDSHVASPLGFNSILKL 952
             Q   +A P+    +  +
Sbjct: 864 LYQGYLLARPMPVAQLEAM 882


>gi|317131843|ref|YP_004091157.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Ethanoligenens harbinense YUAN-3]
 gi|315469822|gb|ADU26426.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Ethanoligenens harbinense YUAN-3]
          Length = 865

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 235/479 (49%), Gaps = 14/479 (2%)

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTGIP 542
           R+  A           R       +++R +  I  D   + ++ E I   A+ DNLT +P
Sbjct: 395 RLILASGTSGCEWDTGRV------NVIRALAQIIADGLAKVRAYEKIEFMAYYDNLTKLP 448

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F     T +  +A     +  VM +D+D +K IND +G   GD ++  + + +   
Sbjct: 449 NRSMFYKEAGTAI-RAAQQGARQVGVMFLDLDSFKSINDTMGHQTGDRLIRDVAQTLSRQ 507

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L    +LAR  G+ F ++  +     +I   A  +      P  +   E+ +TAS+G A 
Sbjct: 508 LSDMAVLARFGGDEFLVLCPAGQGEAEIRMIADRIMTVFKRPFLIKGNEVFITASMGIAL 567

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSEL 720
           +         ++K+A++AMY AK +G N          R   + V++  DL  A++ +EL
Sbjct: 568 FPQDGEDPESLIKHADIAMYQAKEKGKNQYAICSAEMKRVVQENVLLANDLYHALDRNEL 627

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y P + +    IVGLEAL++W HP  G +  S F+ +AE+  +I  I  ++LE   R
Sbjct: 628 EVYYQPQVDIRFGRIVGLEALLRWHHPSLGMVPPSVFVPLAEQTGLINPIGRWVLETACR 687

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W +     P+ + +NI+   LL+ ++ + +  ++ +T   P  ++L  +ESV +  
Sbjct: 688 QCRRWYE--GDQPVHMAVNISIVQLLNADVADQISRILRQTGLEPHALELEVTESVTLRE 745

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            E +  +L +L+ +GISL++DDFGTK S L+ L  +P D +K +   + G    EK  AI
Sbjct: 746 TEATIYVLQQLKALGISLSIDDFGTKYSSLNRLKQLPIDKLKMDIQFVRGIGRGEKDRAI 805

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +R+II +AK+++  +IA+ +  + +   L    C+ +Q  +   P+       +LK   
Sbjct: 806 VRAIINLAKSLDLRLIAEGVETQAEWDFLKENLCNEVQGYYYYKPMPAEQCGAILKHHN 864


>gi|95930028|ref|ZP_01312768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
 gi|95133997|gb|EAT15656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
          Length = 1092

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 125/438 (28%), Positives = 229/438 (52%), Gaps = 6/438 (1%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +  + +   AF D LT +PNR  F + L   +  +        +++ ID+D++K IND L
Sbjct: 644  EHRKQLSYLAFHDPLTQLPNRLRFTEVLEAAVGDAEGHGRY-LSLLFIDLDRFKNINDSL 702

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G ++GD +L ++ RR G L+   D+LARL G+ F I+L +    +  AD A  +  +++ 
Sbjct: 703  GHSIGDKLLQAVARRTGSLIDSADVLARLGGDEFAILLFNCVTPVVGADTAQRVIDALSQ 762

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            P  + +  + V+ASIG            E++K A++AM+ AK  G N  + +  S     
Sbjct: 763  PFQIDDYSLHVSASIGITVAPVDAREPDELIKCADIAMFKAKDAGRNTYKFYERSMNLKT 822

Query: 704  R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               ++++ DL  A+   +L L Y P + L    IVG EAL++W+HP+ G +S  EF+ +A
Sbjct: 823  HELLLLENDLRHALSRDQLELYYQPQLDLQSNCIVGFEALLRWNHPERGLVSPLEFIPLA 882

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            EE  +I ++  ++L    R I +W ++     + + +NI+++     +L   ++ ++ +T
Sbjct: 883  EETGLIVSMGEWILRSACRQIRTWNEEHGRQ-LRVAVNISARQFHHYDLVHCVEKVLEQT 941

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                  ++L  +ES++M + + S   + RL+K+G+ L +DDFGT  S LSYL   P  ++
Sbjct: 942  GVPTEWLELEITESLLMYDIQSSIETMMRLKKLGVRLAIDDFGTGYSSLSYLKKFPICSL 1001

Query: 882  KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K + S +          AI  S + +A  ++  ++A+ I  +  +  L + GC + Q   
Sbjct: 1002 KIDKSFVDDLLTDASDAAIAESTLALASKMDLMVVAEGIEQQEQLDYLQQRGCQFGQGYL 1061

Query: 940  VASPLGFNSILKLLKERF 957
            ++ PL      +  +ERF
Sbjct: 1062 ISRPLPVAQCTQFCRERF 1079



 Score = 46.5 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 27/160 (16%)

Query: 385 TVIQHVLATGYFSQG----IFSDGERQSLAVLGSGDIVWDWDIV-----RDRVTTTPDIA 435
            + QHV A G   Q     +  + +R         D V+   +       + V      +
Sbjct: 337 ALAQHVRAMGRAIQERETELSRERDRFQALFDNVNDAVFMCSVDEEQRVGNFVEVNGVAS 396

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRT--ILDSFVGYRRGRLQY------EFRVRA 487
            +LG +                  D D       L   +G              E  +  
Sbjct: 397 DLLGYSRAEFLQMT--------PMDIDTTIDSLSLRDHIGSISMESDQPIPGLIETTMVT 448

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              +     I ++P+   +  +L  + +A +IT++K++  
Sbjct: 449 KQGRKMPFEINLQPLRLDDQQML--VCVARNITDRKQAQR 486


>gi|107104117|ref|ZP_01368035.1| hypothetical protein PaerPA_01005190 [Pseudomonas aeruginosa PACS2]
          Length = 899

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 150/604 (24%), Positives = 274/604 (45%), Gaps = 18/604 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   + +    +N + Q   +     +       ++ H       +  +F      
Sbjct: 295 IGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQR---- 350

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             AV  S       D         P   +I   ++  +     + LP +   +       
Sbjct: 351 --AVEQSASAFLLIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPAL--ENLSELLFD 406

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             S +  +    Q EFR R  +++ +W  + +  + +  G++  YIGI  DIT+ K + +
Sbjct: 407 ARSALTQQN-SWQGEFRSRRKNHEPYWGQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQ 465

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A++DNLTG+ NR  F+  L   L+ S    +   +++++DID +K+IND LG   
Sbjct: 466 HIEKLAYRDNLTGLANRHYFIGALEERLESS---GDRPLSLLLVDIDNFKRINDSLGHQT 522

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LVSL RR+   L     LAR + N F ++L  +    K    A  +   +  P+ +
Sbjct: 523 GDKLLVSLARRLRSCLGDGATLARFASNEFAVLL-DDTAVEKGESIAAQVLHMLDKPLFV 581

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             + I +T SIG AS          ++K A LA++ AK  G + V+ F  +        +
Sbjct: 582 DNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKL 641

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +L  A+  +EL + Y P + L   +++GLEAL++W HP+ G I    F+ +AEE  
Sbjct: 642 FVESNLRRALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETG 701

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++    R      +      + I IN++ K   D +L   + A++ +     
Sbjct: 702 LIVPIGKWVIREACRQARELAEAGLGE-LQIAINLSPKQFTDPDLVGSIAAILHEENIPA 760

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S+++L  +ES+++   + +R  L RL+ +G++L +DDFGT  S LSYL   P D +K + 
Sbjct: 761 SQLELELTESLLLDATDDTRQQLERLKSLGLTLAMDDFGTGYSSLSYLKKFPIDVIKIDR 820

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     ++  + I  ++I M  N++  ++A+ +     +  L R  CD  Q      P
Sbjct: 821 SFIKDIPDSQDDMEITSAVIAMTHNLKLKVVAEGVESAEQLAFLRRNRCDIGQGYLFDRP 880

Query: 944 LGFN 947
           +  +
Sbjct: 881 IPSD 884


>gi|138894050|ref|YP_001124503.1| sensory box/GGDEF family protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265563|gb|ABO65758.1| Sensory box/GGDEF family protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 802

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 140/584 (23%), Positives = 266/584 (45%), Gaps = 23/584 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            V I +L+    I   +      + + ++ +R       + + V         V      
Sbjct: 230 AVSIYLLVLHRQIGRKV-LAAHKKTLAANEQRLRQLAEMTMEGVIVC-ASGKIVEVNEAA 287

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG     +         ++ IND     ++  S       R + E R    D     
Sbjct: 288 CRLLGYRESELV--------HLPINDVVVDGSMRPSCSNNGVERFEIELR--RKDGAVFP 337

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             I ++   +  G  +  + +  D+T QK++ E +      D LTG+ N+++    +   
Sbjct: 338 AEI-VQHCYDDEGQKVTVVAV-RDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERR 395

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +    +    VM++++   K IND  G AVGD+VL+ L RR  E  +    + R SG
Sbjct: 396 LADAKR-FHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSE--QEGITVGRWSG 452

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           N F  +L   +++ K  + A  + +    PI +   E+ VT ++G + +      +  ++
Sbjct: 453 NEFIAVLPD-SSNEKAEEAAKRLIEVADEPIAVNGLELYVTVNVGISVYPKDGEETKTLI 511

Query: 675 KNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++A Y A+ +        +  ++    +++ ++ DL  A+E  E  L Y P IRL D
Sbjct: 512 RKADIARYEAREKVVSDFLFFNEPMADRLHEKMAMERDLRRALEREEFELYYQPQIRLYD 571

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +++G+EAL++W HP+ G I  S F+ IAE+  MI  IN +++    +      DQ    
Sbjct: 572 RQVIGMEALVRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPH- 630

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++  +       + +  L++ T   P  + L  +E + M + E +  +L +L+
Sbjct: 631 -LSVSVNLSPYEFESRRFVDKLARLLADTGLPPHHLDLEITERMTM-DTEHAFDILSKLK 688

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912
            +G+++++DDFGT  S LSYL  +P D +K + S +     K+  IL SII +  NI   
Sbjct: 689 SLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDVILPSIIRLGHNIGVK 748

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++A+ +  E +   L    CD  Q  + + PL +   ++ L E+
Sbjct: 749 VLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQ 792


>gi|254695003|ref|ZP_05156831.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 3
           str. Tulya]
          Length = 703

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRFLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EA I+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTCYSSLSYLHAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|95931192|ref|ZP_01313914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132754|gb|EAT14431.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 893

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 152/591 (25%), Positives = 275/591 (46%), Gaps = 37/591 (6%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT------------ 429
                   + A     Q +    +R         + V     + + V             
Sbjct: 316 FILESFIDIQARKLAEQALRESEQRYRSLYTAMREGV----AIGELVYDAHGVACDYILH 371

Query: 430 -TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                 + +LG+AS  + G   +   +        +  ILD  V Y   +   E+ +  +
Sbjct: 372 DVNRAFSEMLGVASEELVGHRASEFYHGAP----PYIHILDEVVKYGIPK---EYELPLS 424

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D +  + +   RP      +  R+  I ND+T+ KK+ + I   A+ D LTG+PNR    
Sbjct: 425 DLEKVFHVSVSRP------EKERFACIINDVTDSKKAQQEIERLAYYDTLTGLPNRVLIK 478

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL   +  +         V+ +D+D +KKIND LGI  GD +L  +++R+   L+  D 
Sbjct: 479 DRLQQAVAQAQRS-RALVGVLALDLDHFKKINDSLGIGCGDQMLKLVSQRLKGHLRQGDS 537

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +AR+ G+ F I++    +   I   A  +   +A P+ +   ++  T S+G + + +   
Sbjct: 538 VARMGGDEFVILITGIKSQNDIVTAAGKILDLLAEPVTIDGHDLVSTGSLGISVYPTDAD 597

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
               +LK+A+ AMY AK  G N  + +   ++    +R+ +  DL  A+  +EL L + P
Sbjct: 598 EVDLLLKHADTAMYQAKETGRNLYQFYSPDMNERAFERLFLDSDLHRALARNELELYFQP 657

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I L    +VG EAL++W+H   G IS   F+ +AEE  +I  I  +++E   R    W 
Sbjct: 658 QIDLAQGHVVGAEALLRWNHATKGQISPVVFIPLAEESDLILDIGGWVIEEACRHARQWH 717

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           DQ     + + +N++++     +L + +  ++ +T      ++L  +ES++M  PE +R 
Sbjct: 718 DQ-GYTDLRVAVNLSARQFRS-DLPDIVARVLHETGLPAHLLELELTESLLMERPELART 775

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           +L +LR +G  L++DDFGT  S LSYL + P D +K + S +           I+ +II 
Sbjct: 776 ILNKLRYLGNHLSIDDFGTGYSSLSYLKHFPIDRLKIDRSFVKDLNVDPDDAIIVEAIIA 835

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +A  +   ++A+ +      + + + GCD IQ   VA P+  +  L+ L++
Sbjct: 836 LAHGLRLNVVAEGVETSDQFEFMRQRGCDEIQGYVVARPMPADDFLRYLQK 886



 Score = 46.5 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +        +G  +   +      +  P       + +    G     L     +
Sbjct: 91  LVVARDELEAIFNATGAAIIVLNDELQLHSCNPMAVKRFSIDAEKALGCH---LEQAIPD 147

Query: 460 DRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                    L+     R+GRL  E     +     W  +   P+ NSN  +  Y  I +D
Sbjct: 148 CHSLLSQNFLNELANCRQGRLVIEIAFHDS-----WYSLVATPVRNSNDQVSFYALIFSD 202

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPN 543
           ITE+K++ E  L  A    LT I N
Sbjct: 203 ITERKRT-EESLVEAET-RLTEILN 225


>gi|157960295|ref|YP_001500329.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845295|gb|ABV85794.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 696

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 137/560 (24%), Positives = 261/560 (46%), Gaps = 16/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPY 455
            + + ++       +  +   ++  D     +   P  A +LG  +   +     N    
Sbjct: 124 QEEMQTNDPLLKAVLESAAVAIYAIDDKGKCIFANPICAQLLGYTSPEQLLN--FNMHEL 181

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I+ N      +  ++ +    G ++ +     AD     +  + +P+   +      +  
Sbjct: 182 IYQN-----HSCTEATLPLSNGEVKEDI-FWRADGSSFPVDYKSQPLVLQHNR-NGAVIS 234

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D +E+ ++   I   A  D LT +PNR   L RL  +++ S     +   V+ +D+D 
Sbjct: 235 FYDNSERLEAEALIRHQAHYDTLTELPNRFLALKRLEQLVEASERSGQM-IAVIFLDLDD 293

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KKIND LG   GD +L+S ++R+    +  D + RL G+ F I+L   +++      A 
Sbjct: 294 FKKINDSLGHEAGDQLLISASKRLLNATRSEDTVGRLGGDEFIILLDGLSSASDAQPLAE 353

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +      P  +  R++ +TASIG A + +   TSSE+L+NA+ AMYH K  G N    F
Sbjct: 354 NLIGGFRKPFYIDNRQLVLTASIGIAIYPNDGETSSELLRNADSAMYHTKSIGRNTYSYF 413

Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  +     +  +E +  A+E  EL   +   + + D  I+G EAL++W++P  GN+S
Sbjct: 414 THAMNKEVSRRLAIEEQIHGALERGELQAHFQIQLDIRDGSIMGAEALLRWNNPTLGNVS 473

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ IAE+  +I+ +  F+L+       +W+   N     + IN++ +   +  L + 
Sbjct: 474 PAEFIPIAEQTGVIEPMGEFILKCALEAARTWQKLFND-KFRVAINLSPRQFRNPNLVQL 532

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   + K    P  ++L  +E V++     +   L +L   G  +++DDFGT  S LSYL
Sbjct: 533 ITDQVYKFGMRPDDLELEITEGVLLSGHAYTLDALKQLSNAGFCISMDDFGTGYSSLSYL 592

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PF  +K + S ++   +   +  ++ + I MA  +   +IA+ +  +  + EL+ M 
Sbjct: 593 RTYPFQILKIDRSFISDMNKDGKSNELIIATIEMAHALGIRVIAEGVETQEQLDELSFMM 652

Query: 932 CDYIQDSHVASPLGFNSILK 951
           CDY Q   ++  +    +LK
Sbjct: 653 CDYAQGFLISKAVPLTELLK 672


>gi|261215348|ref|ZP_05929629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 3 str. Tulya]
 gi|260916955|gb|EEX83816.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Brucella abortus bv. 3 str. Tulya]
          Length = 709

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 139/588 (23%), Positives = 243/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 118 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 177

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I            D  V  RR  L  E +V   D   
Sbjct: 178 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHDRMVMRRREVLSVERKVEHKDGTS 234

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 235 RTMRIIKSSIPPVEGNEPRFLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 295 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 352

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 353 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 411

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 412 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 471

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EA I+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 472 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 529

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 530 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 587 DLRRLGVRIAMDDFGTCYSSLSYLHAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 647 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 694


>gi|126660202|ref|ZP_01731319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126618504|gb|EAZ89256.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 964

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 128/484 (26%), Positives = 243/484 (50%), Gaps = 7/484 (1%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R       W ++   P  +    + + + +  DIT++K + E +   A  D LTG+PNR 
Sbjct: 480 RNPSIAPIWTLVNAFPSFDDQNCLTQVVVLLLDITDRKLAEEQLRYRALHDALTGLPNRT 539

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              +RL   +       +    V+ ID+D++K IND LG  VGD +L+ +   +   ++ 
Sbjct: 540 LLTERLDHAIQRVKRYPDKLFAVLFIDLDRFKVINDSLGHLVGDQLLIYIADTLKSHVRS 599

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARL G+ F I+L   ++  ++      + + I  P+ ++ + +  +ASIG A  +S
Sbjct: 600 CDTVARLGGDEFVILLEDLSSPHEVIQVIERIEEDIKKPVQVMNKTLFTSASIGIAMSSS 659

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
              T  ++L++A+ AMY AK       E F V   +   +   ++  L  A+E  +  L 
Sbjct: 660 EYATGEDILRDADNAMYRAKGNNLTSYELFNVEMRQTVQEIFELETSLRQALEEQQFILH 719

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+     +++G EAL++W HP    IS  +F+ +AEE  +I  ++ ++ E     + 
Sbjct: 720 YQPIVSTNSLQLLGFEALVRWVHPDKDLISPRKFIPLAEETGLIIPLSEWIFEEACGQMA 779

Query: 784 SWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            W     +   + I +NIA+      +    ++  ++KT      +KL  +ES+++ N +
Sbjct: 780 QWCAHFPIANSLKISVNIAAYHFQSPQFLATIEQTLAKTKLLGKNLKLELTESLLIKNTD 839

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST----EKRIAI 898
           R   LL +L+K GI ++LDDFGT  S L+YL   P +T+K + S + G      +  ++I
Sbjct: 840 RVLSLLPQLQKQGIEISLDDFGTGYSSLNYLKRFPINTLKIDKSFVDGLDYDSNQADVSI 899

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +++II +A+++   ++A+ +  +   K+L ++ C+ IQ   +  PL        +  +  
Sbjct: 900 IKAIIYIAQSLGMNVVAEGVETDFQRKQLQKLQCEAIQGYLIFPPLTSQEATNFINSQLS 959

Query: 959 LVKN 962
           ++ N
Sbjct: 960 VISN 963


>gi|89900768|ref|YP_523239.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Rhodoferax ferrireducens T118]
 gi|89345505|gb|ABD69708.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Rhodoferax ferrireducens T118]
          Length = 1353

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 243/576 (42%), Gaps = 12/576 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            G   I+         +      +  +     + + +   D     +        I G + 
Sbjct: 758  GLAAIRTAFRDISERKLAHDKLQLAANVFSHAREGIAITDARATIIDVNEAFCRITGYSR 817

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              + G     L      D+  +  +        +G    E   R  + + +  ++ I  +
Sbjct: 818  DEVLGQNPRVLGS-GRQDKAFYAAMWHDL--GEQGHWYGEIWNRRKNGELYPEMLTISAV 874

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                G +  Y+ + +DI+  K     +   A  D LT +PNR    DRL   +  +    
Sbjct: 875  RTDQGQVQNYVALFSDISAIKAHQHELEHIAHFDALTNLPNRVLLADRLQQAMAQAQRRG 934

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   +  +D+D +K IND  G   GD +L+++  R+ + L+  D LAR+ G+ F  +L+
Sbjct: 935  QM-LALAYLDLDGFKAINDRHGHEAGDLLLMTVATRMKQTLREGDTLARIGGDEFVAVLL 993

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAM 681
              ++S   A     +  + A P+ L +  + V+AS+G   +    ++ + ++L+ A+ AM
Sbjct: 994  DLSDSKASAPMLSRLLAAAAEPVRLGDLALQVSASLGVTFYPQVDEMEADQLLRQADQAM 1053

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N    F  +  RS R   +    +  A++  E  L Y P + +    ++G E
Sbjct: 1054 YQAKLAGKNRYHFFDAAQDRSARGHHESLERIRQALDRREFVLYYQPKVNMRTGAVIGAE 1113

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            ALI+W HP+ G ++ + F+ + E+  +   I  +++         W+      P  I +N
Sbjct: 1114 ALIRWQHPEKGLLAPALFLPVIEDHPLAVDIGEWVIATALIQNELWQADGLDMP--ISVN 1171

Query: 800  IASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            + ++ L   +    ++ L++      P ++++   E+  + +       +   R++G+  
Sbjct: 1172 VGARQLQQADFVPRLRELLAAQPGVKPFQLEIEVLETSALEDWVGVSQSIEECREMGVLF 1231

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             LDDFGT  S L+YL  +  D +K + S +         +AIL+ +I +A      +IA+
Sbjct: 1232 ALDDFGTGYSSLTYLKRLQVDLLKIDQSFVRDMLDDPDDMAILQGVIGLAGAFRRNVIAE 1291

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +        L ++GCD  Q   +A P+  +     
Sbjct: 1292 GVETIAHGTLLLQLGCDLGQGFGIARPMPADLFPAW 1327



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 59/176 (33%), Gaps = 3/176 (1%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQS 408
           W +   +A        ++         + + +     I H++    +    +        
Sbjct: 310 WMLRRQLAPLLATAETLVALPTAQTFPIALPVAHPDEIGHLIDGFNHLLAHLHQRETLLK 369

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +  S   ++  D           +A + G    ++ G   +++  +H  +R+  +  +
Sbjct: 370 QILDTSSAAIFVIDSQGRITQANQRMAEMFGCPLDTLIGH--DYVSLVHPAERNVGQQNM 427

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            + +  +      E     AD    W  +  R   +++     ++G+  DITE+ +
Sbjct: 428 LALLANKVSSSDLERLYWRADESEFWGHLACRGFHDASTHQHCFVGVITDITERIQ 483



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/185 (8%), Positives = 46/185 (24%), Gaps = 6/185 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            +     +     +            +  +     +   V+     ++ +    ER    
Sbjct: 605 ILSSLGQVLGTFASYHHTTHTPTSAEIASVERFARIAAIVIEGQAAAKKMRDSEERFRTL 664

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           +  S   +         +   P    + G   +  + G     L  IH +        + 
Sbjct: 665 IEESPAAILVH-RELRIIYLNPAAIAMFGARTAQELVGK--ALLDLIHPDSHQVATARVR 721

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                       + +    D     + ++   +      +        DI+E+K + + +
Sbjct: 722 HITNTGHAAPLIDEKYLRLDGTPIDVEVQSTSIIYEG--LAAIRTAFRDISERKLAHDKL 779

Query: 530 LCNAF 534
              A 
Sbjct: 780 QLAAN 784


>gi|15889504|ref|NP_355185.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15157378|gb|AAK87970.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 795

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 145/654 (22%), Positives = 269/654 (41%), Gaps = 24/654 (3%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
            S   +   +I +     I+   + G    V+     +          +  T+RL +   
Sbjct: 140 LSRTELAFITIFILAVLTIVLAAIVGNRFMVIRPLMRL-------AAAIEATRRLGSRHH 192

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                   +   +   F  +Q  L        I +  ER++     +  +++  D     
Sbjct: 193 VDWRSKDEIGR-LAKSFNEMQTQLEKEEL--EIKNAHERKTEIYNRTPAMLFSLDRHDRI 249

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
              +       G     + G   N+   IH +DR  F+    +             R   
Sbjct: 250 AAVSDYWVQATGYDRTRILG--LNFADLIHPDDRSLFQQRKTAHPSPDASHNGITVRFHC 307

Query: 488 ADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            D      +I  +P+ + +       + +  D+TE  +S +     A  D+LTG+ NRQ 
Sbjct: 308 MDGGVMDALILEKPLDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLTGLFNRQG 367

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L   +  +  + +     + ID+D++K IND LG A GD VL   T ++  LL   
Sbjct: 368 FEAILDLQIRDADRNGS-ELACLFIDLDRFKAINDNLGHAAGDAVLKQFTLKLEPLLTPL 426

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D  +RL G+ F I+L  +    +  +F   +   + MP  +    I ++ASIG A +   
Sbjct: 427 DSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGMAVYPLH 486

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724
             ++SE+L+NA++AMY  K  G N  + F   +     +   ++ D+  A+        +
Sbjct: 487 ASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSEDWFEAYF 546

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI  L   +  G EAL++ +HP  G +S +  + +AEE   I+ I   +L++   ++  
Sbjct: 547 QPIQDLATGQTAGFEALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQSIANLAR 606

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
                 M   ++ +N +        L   +  ++ +    P+R+ +  +E+V+M +  + 
Sbjct: 607 LSRLPGMDQTYVAVNFSPLQFE-PGLPTRIAGVLHRHGILPARLVIEITEAVIMKDDPQI 665

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-------GSTEKRIA 897
           R +L  + ++G  + LDDFGT  S LSYL   P D VK + S             ++   
Sbjct: 666 RAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIRQRSRM 725

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++  I  ++  +  T+IA+ +  E     LT MG D+ Q  + A P     ++ 
Sbjct: 726 LVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIA 779


>gi|254253797|ref|ZP_04947114.1| hypothetical protein BDAG_03076 [Burkholderia dolosa AUO158]
 gi|124898442|gb|EAY70285.1| hypothetical protein BDAG_03076 [Burkholderia dolosa AUO158]
          Length = 731

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 134/569 (23%), Positives = 246/569 (43%), Gaps = 14/569 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--W 452
             +  +    E   L V    + +         V + P    +L +  G + G   +   
Sbjct: 164 RIASQLARSEEHHRLVVNSLNEGILVVSRDGIVVASNPSANRMLRVT-GELVGRRLSTVI 222

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDI 509
           L  +H +              +      L Y      AD    W+     P+        
Sbjct: 223 LRKLHEDGTPIRPDEWPSRRALATAAPLLGYTVGFGLADGDVIWVRGNAVPIVKPGETQA 282

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTV 568
              +   NDI   +++ + +   A +D LTG+ NR+   DR+  + D   +     R  +
Sbjct: 283 ESVLVSFNDIGPVREAQQQLRYLATRDALTGLYNRRWLSDRMRELFDGRGSAGGPARVAI 342

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+  +KK+ND  G   GD +L S+  R+         L R+ G+ F I++   ++  
Sbjct: 343 LFIDLVGFKKVNDTAGHDAGDALLRSVASRLAACAGGHA-LTRVGGDEFVILVDDCDDPE 401

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  +  +I  P  +   E  +  SIG +        +  +++NA+ AMY AK RG
Sbjct: 402 SLAVLAREVIDAIGKPFAIANNEYWLGVSIGISIAPRDGEDAVTLMRNADSAMYDAKQRG 461

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +H   F        +    I++ L  A+ +  L L Y P++       VG EAL++W  
Sbjct: 462 RHHFTFFTAQLNLRLQRRFAIEQSLRRALSSDMLRLAYQPVVDARSGRTVGAEALLRWTS 521

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S +EF+ +AE+  +I AI  ++LE   R +  WR     P + + +N++ +   
Sbjct: 522 PELGPLSPAEFIPVAEDTGLIVAIGQWVLETACRQVAEWRR-TIAPDLMLAVNLSPRQFH 580

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E ++  +++T   PS ++L  +E V+M +      +L  L  + + +++DDFGT 
Sbjct: 581 D-GLVESVRRCLAQTRLDPSALELEITEGVLMNDTATVLPMLEALTAMNVRISVDDFGTG 639

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P   +K + S ++G       +AI ++++ MA ++   + A+ +      
Sbjct: 640 YSSLAYLKRFPLHNLKVDRSFVSGVPDHRDSVAITQAVVAMAHSLGMKVTAEGVETLAQS 699

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
             L ++GCD  Q      PL     ++ L
Sbjct: 700 SFLQQIGCDMQQGYLFGEPLEPADYVRRL 728


>gi|163781895|ref|ZP_02176895.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883115|gb|EDP76619.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 570

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 144/552 (26%), Positives = 252/552 (45%), Gaps = 15/552 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    + V   D              I GL    ++G   + L +       +F  + D
Sbjct: 24  ILKHVSEGVLIVDKEGIIRGANEAFFKITGLGREGVYGKSLSELDF-KWEGYPSFNEVRD 82

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +    G  + E    +           +      N     YI I  D T+++     +
Sbjct: 83  ILLSE--GVWRGEVWGVSRGGSPFTAETTLVKADEEN-----YIAIFLDSTDKRSLEASL 135

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+PNR    D L+  L  +  ++N +  V+  DID +K IND LG  VGD
Sbjct: 136 RSLAYYDALTGLPNRALLYDHLSQFLFQAK-NENKKLAVVFFDIDNFKLINDTLGHEVGD 194

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L +   R+        ++AR   + F ++L S      + +       S+  P  +  
Sbjct: 195 SLLKAFAHRLTSHFPPNTMVARFGSDEFVVVLESIAGIDDVEEVVSGFINSVTTPFFIEG 254

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
           ++I VT + G + +         +L+NA++AM+HAK  G +  + F        S+R  +
Sbjct: 255 QKIYVTVTAGISLYPIDGGDPQTLLRNADIAMHHAKELGKSSFKFFTNELNLKVSERFTL 314

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + +L  A+E  E  L Y P   L    IVG+EALI+W HP  G I    FM +AEE  +I
Sbjct: 315 QAELRDALEREEFVLYYQPQFELRTNTIVGVEALIRWHHPDRGVILPGRFMHVAEETDLI 374

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L R   D     +     P+ + +NI++K + + +  E ++ +++ T + P+ 
Sbjct: 375 VPLGYWVLRRACEDGRRLVENGF--PLKVAVNISAKQISEEDFLEKLRDILNATGFDPNL 432

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ESV+M N +++  +L  L+K+GIS+ +DDFGT  S L+YL Y P D +K + S 
Sbjct: 433 LEVEITESVLMKNKQQAARVLRELKKMGISIAIDDFGTSYSSLNYLKYFPVDKLKIDRSF 492

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    S    +AI  +II +A N+     A+ +  E  +  L    CD  Q  + + P+ 
Sbjct: 493 IGDVISDPNDVAIATTIIAIAHNLGLKATAEGVETEEQLIFLKLWQCDEAQGFYFSPPIT 552

Query: 946 FNSILKLLKERF 957
            +S + +L+   
Sbjct: 553 LDSFIDMLRNEN 564


>gi|227111556|ref|ZP_03825212.1| putative signaling protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 722

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 135/583 (23%), Positives = 249/583 (42%), Gaps = 21/583 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +++   L          +   R       S D +   +              +L     
Sbjct: 152 ASLVMDKLEMRRLELARKASQVRFENIANTSPDTILCVNEKGVITFWNTAAEHMLEYTDE 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIR 500
            + G     +  I  +    F   L+  V  R      +  E  V+A       + + + 
Sbjct: 212 EIIGRS---INTIVPD---AFVVQLNHLVTDRDSLMKGVTLELNVQAKSGSMVPVELSVS 265

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                + D + Y  I  DITE++++ E +   A  D LTG+ NR      L T L     
Sbjct: 266 --MWEDNDNVSYGAILRDITERRRNEERLFLLAHLDPLTGLANRTLLTSNLETALK---- 319

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     +M++D+D +K +ND LG + GD++LV + ++I   ++  D++AR+ G+ F ++
Sbjct: 320 -NEPAVCIMMVDLDGFKDVNDSLGHSSGDNILVHVAKKIKATVRSGDVVARMGGDEFALL 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
               ++       A  +   I+  + + + +I ++ASIG   +    +T  ++L +A+LA
Sbjct: 379 FPGLSDKKVAGKIAEQIIHEISQAMVIDDHQINISASIGAVLYPEYGLTVQDLLTSADLA 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N    F        +      L    A E  E  + Y P ++L   EIVG 
Sbjct: 439 LYQAKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G +S + F+   E     + +  +++E   R    W  QA+     I I
Sbjct: 499 EALLRWRHPERGLLSPAAFLTALENGPWAERVGDWIVETACRQAAEW-SQASDRYFRISI 557

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+ S       L + +  ++++T   PS ++L  +E++++   E     L  LR+ GI +
Sbjct: 558 NLFSAQFRTGMLAQKIMDILARTGLQPSSLELEITENIILRYDESMLQPLNTLREAGIGI 617

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             DD+GT  + LS L   P   +K + + +     +    AI+R+I+ + K+    +IA+
Sbjct: 618 AFDDYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAE 677

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +      + L   GC+  Q      P+      +LLK   P+
Sbjct: 678 GVETLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720


>gi|315125589|ref|YP_004067592.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315014102|gb|ADT67440.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 1008

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 146/559 (26%), Positives = 250/559 (44%), Gaps = 10/559 (1%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                   SL    S + +   D         P        +   +       L     +D
Sbjct: 447  QESLHLASLVYNNSSEGMAITDENGVIYDVNPAFCETTLYSRKEVLNQTIGILSS-GKHD 505

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +  +  +  S    + GR Q E   R  + + +   + I  + + N      I I  D+T
Sbjct: 506  KQFYNYMWQSL--NKTGRWQGEITNRRKNGELYVEWLTIDTIYDKNKAPTSRIAIFTDLT 563

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K++ E I   A  D+LT +PNR    +RL        T+ + +  +M++DID +K IN
Sbjct: 564  EKKQADELIWRQAHFDHLTDLPNRLELKERLNLRFANL-TNADQKLVIMLLDIDHFKDIN 622

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG   GD +L  ++ RI +  K  D +AR+ G+ F ++    + S  I   A ++  S
Sbjct: 623  DTLGHHYGDRLLKLVSERIVQTAKEADFVARIGGDEFVVVFSDLHGSDNIKQMAKSLLLS 682

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +A  I + + ++ ++ASIG A          ++LK A+ AMY AK+ G N  E F     
Sbjct: 683  LASTIFIEDEKVYISASIGIACAPDDGQNPEQLLKAADQAMYKAKNSGRNGFEFFSHDMR 742

Query: 701  --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + R+ + ++L  A+E  +  L Y PI+ L D  +   E LI+W HP+ G IS ++F+
Sbjct: 743  EDANARMQLLKELRSAIELEQFELYYQPIVSLNDLHVHKAEGLIRWQHPEKGLISPADFI 802

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQAL 817
             +AEE   I A+  F+     + +   +         I IN++   L   +   +    +
Sbjct: 803  PLAEETRQINALGQFVFAEALQTLNDIKKHIQDE-FQISINVSPVQLATVDSGIDEWYDM 861

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++      S I    +E +++   E ++  L  L K G+ L LDDFGT  S L+YL  + 
Sbjct: 862  LATANIPASAIVAEITEGLMVNPEELTQSRLKALVKSGMQLALDDFGTGYSSLAYLQEMD 921

Query: 878  FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K +   +    +     A+  +II MA  +   +IA+ I  ++ +  L   GCDY 
Sbjct: 922  TDYLKIDKRFVDNIQKGSQELALCEAIIMMAHQLGLKVIAEGIETKLQMDLLLEAGCDYG 981

Query: 936  QDSHVASPLGFNSILKLLK 954
            Q    + PL   S ++L+ 
Sbjct: 982  QGYLFSKPLHKASFMQLIT 1000


>gi|121595818|ref|YP_987714.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax sp. JS42]
 gi|120607898|gb|ABM43638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax sp. JS42]
          Length = 607

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/558 (23%), Positives = 252/558 (45%), Gaps = 14/558 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDR 461
            ER   A+  + D +   D     +     + TI G  +  + G   + L   H      
Sbjct: 47  LERA--AMDAAPDGIVLADRQGRILMVNAPMETISGYTNAQLCGQSIDLLVPAHARPE-H 103

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                        R   +  +  ++  D     + I +   S+  G +   +    D+++
Sbjct: 104 GQHMQRYHQSPSRRPMGMGRDLWLQRRDGSQVPVDIALGHSSSHGGTV---VAFVRDVSD 160

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++    +   A  D LTG+ NR +F  RL   +   A   +    ++++D+D +K IND
Sbjct: 161 LRRLEARMHYQATHDTLTGLLNRWTFGQRLEQAIAEQAGAQSPPFALLLLDLDDFKAIND 220

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A GD VL  + RR+   L   DILARL G+ F ++L     + +    A  + +++
Sbjct: 221 GYGHAAGDQVLQEVARRLRGALGTGDILARLGGDEFTVLLPGVACAAQAEGVAARLMQAL 280

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +P  +   E+   AS+G A        ++ +L+ A++AMYHAKHRG  +   +  S  R
Sbjct: 281 CVPCRVQGFELNFGASMGIALCPQDAGDAATLLRYADMAMYHAKHRGRANFAFYAPSMGR 340

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               ++ + + L LA+    L L Y P + +    +VG+EAL++W  P+ G +S   F+ 
Sbjct: 341 KMAEKIQLHDRLKLALAYGGLTLHYQPQVEVATNRMVGVEALLRWHDPQLGEVSPERFVP 400

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  +  +++    R I +W  Q     + + +N++++ L   +L E +   + 
Sbjct: 401 VAEATGLILELGAWVMAAACRQIAAWERQG--MRLRVAVNLSAQQLRQTDLVEQVARNLR 458

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +ES  + +PE++  +L  LR +G+++ LDDFGT  S L+YL  +P  
Sbjct: 459 THHVPPELLELEVTESEALADPEQACQVLNELRALGVAVALDDFGTGHSSLAYLKRLPVS 518

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   M    ++     ++R+++ +A  +   ++ + +     ++ L  M C   Q 
Sbjct: 519 HIKVDREFMRNVPASGGDTTLVRAVVALAHTMGLRVVVEGVATREQLQFLREMQCACYQG 578

Query: 938 SHVASPLGFNSILKLLKE 955
              A  L  + +  L   
Sbjct: 579 WLFAKALAPDDVALLYAA 596


>gi|148258048|ref|YP_001242633.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410221|gb|ABQ38727.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 902

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/575 (23%), Positives = 258/575 (44%), Gaps = 21/575 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGL 440
               +          SQ + S  +   L V      ++ +       +        IL  
Sbjct: 319 FLIALFDDATERRSLSQELESTKKFLELIVDNIPVSLIVESAGDGRYLLANRSAEIILNR 378

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G         +  +        D     +RG L  E  +   D    ++  R  
Sbjct: 379 KREDATG--LTTADIFNPRE-ARLIMARDEAAIKKRGVLTEEHPISTKDGLRLFLTRRAT 435

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +    G+    I    D+T+++++   +   A+ D LT +PNR +FL  L+ +++ +  
Sbjct: 436 -VLGDGGEPQYLIKTYEDVTDRRQTESRMAHMAYHDGLTDLPNRAAFLQALSQMIE-ACA 493

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D      V+ +D+   K +NDV G A+GD +L+ + RR+   +    ++ARLSG+ FG+I
Sbjct: 494 DTGEEFAVLNVDLKGLKDVNDVFGHAIGDKLLIEVARRV-HTVARGGVVARLSGDEFGLI 552

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A  +  +IA+   +  + I    + G + +  +    + +L NA  A
Sbjct: 553 IDG-KQPETGRALAEQLAAAIAVEFQIEGKSIRTALTTGISVFPHNGPDPASLLANAGAA 611

Query: 681 MYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR----LMDEE 734
           ++ AK   RG        +     DR ++ ++L +A++N EL L + P       +   E
Sbjct: 612 LFRAKARSRGSITFYEPEMDQQIRDRRVLHQELSVAIKNGELSLYFQPQASSGRTVDCSE 671

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G EAL +W HP  G +  S+F+ +AEE  MI  +  ++L    R+  SW       P+
Sbjct: 672 IIGFEALARWHHPVRGFVPPSDFIPLAEESGMIVEMGEWILREACREAASWPK-----PL 726

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++    +  +L   + +++ +T  SP R++L  +E V++ + +R   LL RL+ +
Sbjct: 727 QVAVNLSPAQFVHGDLVALVHSILLETGLSPGRLELEITEGVLIEDFDRGVALLRRLKAL 786

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S LSYL   PFD +K + + +       +  AI+R++I +   +  +
Sbjct: 787 GVRVSMDDFGSGYSSLSYLQAFPFDKIKIDRAFVMNLGRNPQSAAIIRAVIGLGHGMNMS 846

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I+A+ +     +  L   GCD +Q   +  PL  +
Sbjct: 847 IVAEGVETPEQLGFLAEQGCDSVQGYLLGKPLPID 881



 Score = 39.9 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 34/138 (24%), Gaps = 4/138 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNW 452
                 + S  +     V      V   +I     +           ++   + G     
Sbjct: 204 RRLEDELASTKQFLESVVDQVPACVVAKNIEDGRYIFANRAFERFARVSRDRIIGKRPG- 262

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                     N      + +       + E  V+  D +   +        N   +    
Sbjct: 263 -DLFGEETAANITQADRAAMLAPGTTYRSELVVQRGD-EKRILESHRVVARNDKNEPQFL 320

Query: 513 IGIANDITEQKKSLEGIL 530
           I + +D TE++   + + 
Sbjct: 321 IALFDDATERRSLSQELE 338


>gi|117925092|ref|YP_865709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117608848|gb|ABK44303.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 714

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 141/547 (25%), Positives = 269/547 (49%), Gaps = 12/547 (2%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             + + V   D              I G     + G     +   H    +     L + 
Sbjct: 162 DNTQEGVLLLDDQGTVQAVNNAYTIISGYHWEELLGKS---VCLCHGGLCEESNAELQTI 218

Query: 472 VGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + + R  G  + +++    + +F+   IR+  + + NG    Y+ +  D++ Q  S++G 
Sbjct: 219 LSHTRCDGSWEVQWQNSRRNGEFYLEQIRVTMIEDLNGTPQSYVVVVRDLSYQDSSIKGA 278

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              + +D LTG+PNR  F DRL  +L  +      +  V+++ +D ++KIND LG  +GD
Sbjct: 279 RTASHEDALTGLPNRSLFADRLEQVLTHAKRSGE-KVAVILLGLDGFRKINDSLGHQIGD 337

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  + +R    L+  D +AR+  + FG I     ++  I      ++++++ PI + +
Sbjct: 338 QILTIMAQRFQTNLRGGDTVARMGSDEFGFIARDLISTQSILSVLGKIKRTLSAPIKIAD 397

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707
            E+  TA IG +      + +  +++ A+ A+  AK  GGN    F  +  ++   R+ +
Sbjct: 398 SELVFTAGIGISVTPDDSLETDTLIRYADAALGRAKAGGGNIFTFFTQTMEQNASKRLHL 457

Query: 708 KEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  L  A+E  EL L Y   I   D  +I G EAL++W  P+   IS  +F+ IAEE  +
Sbjct: 458 EGRLRKAIEQEELTLFYQAKISCEDSPKISGFEALVRWITPEGDIISPGDFIPIAEETGL 517

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++++R  RDI   +     PP+ +  N++ +  + + L + +Q  + +    P 
Sbjct: 518 IIPLGSWVIDRTCRDIAHLQA-LGFPPVVVSANLSPRQFVQDGLLQVVQQALVQHGIDPC 576

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES VMG+ +++  LL  L  +G+ + LDDFGT  S L+YL   PF T+K + +
Sbjct: 577 WLELEITESSVMGSVDQATELLKSLVALGVHIALDDFGTGYSSLAYLKRFPFHTLKVDRA 636

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    +     AIL++I+ +A+N+E  ++A+ +  E     +T+ GC  IQ  + + PL
Sbjct: 637 FVQTVEKDRADQAILQAIVSLARNLELQVVAEGVENEGQRDFITQAGCHSIQGFYYSKPL 696

Query: 945 GFNSILK 951
             + +++
Sbjct: 697 PLSEVME 703


>gi|320352269|ref|YP_004193608.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Desulfobulbus
           propionicus DSM 2032]
 gi|320120771|gb|ADW16317.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 723

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 145/559 (25%), Positives = 255/559 (45%), Gaps = 16/559 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNF 464
            + A+  +   +   D                G A   + G   +        I      
Sbjct: 34  LAQALDRTTAGIIITDADGVVQYANQRQCEQSGYALDEILGHNTSLFQSGNTPIE----V 89

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L + +   R   Q +   R  + + +W    I PM +  G  L Y  +  ++   + 
Sbjct: 90  YQHLWTTIKGGRE-WQGKLLNRRKNGELYWEFNYISPMLDDRGQPLGYFALKREVLHGQD 148

Query: 525 SLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT---VMVIDIDKYKKIN 580
           ++ G        D LTG+ NR +F DR+   +           T   V  +DID++   N
Sbjct: 149 TVSGEDGLPRSIDPLTGLLNRPTFHDRVDQAIRRRLEGSGATNTTLIVAYLDIDRFHTFN 208

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +V+G  + D ++V +  RIG+ ++  DILARL G+ F ++     +          + + 
Sbjct: 209 EVIGHTLADSLMVEVANRIGQAVRRDDILARLGGDEFAVLFEHARDEASYTTLINRILQQ 268

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           I  P+   + E+ VTASIG A +      +  +L NA  AM  AK  GG++   F+    
Sbjct: 269 IRQPVVTPQCELVVTASIGIACYPRDGDDTVSLLNNARTAMRLAKQEGGDNYCFFQPLNK 328

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               D++ +   L  AVE +EL L Y P I L+  EIVG+EAL++W+ P  G +    F+
Sbjct: 329 PVTIDQLDMASQLRFAVERNELVLHYQPQISLISGEIVGVEALVRWNRPNSGMVPPGVFI 388

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  ++L++    I++W+ +   PP+ + +N+A+    +  L   +  L+
Sbjct: 389 PIAEETGLIVGIGEWVLQQAIAQILAWQREGL-PPVKVAVNLAANHFHNPLLPGLIDRLL 447

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P  ++L  +ES +M N  R + ++ +L+  G+ L+LDDFGT  S L+YL   P 
Sbjct: 448 DESGIEPHLLELELTESTMMRNVVRVKQIVDQLKIRGVCLSLDDFGTGHSSLAYLSQFPI 507

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +T   +     +I+ + + M   +   +IA+ +  E  +  L R+ CD +Q
Sbjct: 508 DLLKIDRSFVTDVTTNPTNASIVAATVAMTHKLGKNVIAEGVETEAQLAFLRRLHCDQMQ 567

Query: 937 DSHVASPLGFNSILKLLKE 955
               + P     I  +L+E
Sbjct: 568 GFLFSRPRPAEEIGVMLRE 586


>gi|120554257|ref|YP_958608.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120324106|gb|ABM18421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 575

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 124/549 (22%), Positives = 243/549 (44%), Gaps = 15/549 (2%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D  R  +        + G +     G     L  I    R+       +++ +      
Sbjct: 36  YDRNRRVIYWNEASTRLYGYSRNEAQGKRLEDL-IIPKAMREAVIEAHTNWLDHNISIPA 94

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--EQKKSLEGILCNAFQDNL 538
            E  ++  D     +      +    G+   +     DI+  EQ ++   ++  A  D+L
Sbjct: 95  EELALKHKDGHLVPVYSSHVMIKQDTGECEMF---CIDISLEEQTQTKAELVRRASFDDL 151

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR+     L + L  +   +     V+ +D+D +K IND LG   GD +L S+   
Sbjct: 152 TGLPNRRLMESELESRLAEADRCNR-EVAVIFMDLDNFKLINDTLGHYQGDSLLKSVADT 210

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D+L R  G+ F ++L   +    I +    + K++   + L      V+AS 
Sbjct: 211 LKQELRHSDLLCRFGGDEFVLLLFDFHGPEGIHELLQRLVKALESKVQLHGDCYQVSASF 270

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE 716
           G + +  +  T++E++ NA+ AMY AK  G N V  +   ++        I   L  A+ 
Sbjct: 271 GVSLYPHNGGTAAELMGNADAAMYRAKEIGKNTVCFYTSDINDRLVKYQQITALLRQALT 330

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N  L L Y P I L        EAL++        +S + F+ +AE+  +I  I  ++++
Sbjct: 331 NGGLELYYQPQIDLRTGGATSCEALLRCFDKASNLVSPATFIPVAEKSGLINRIGDWVID 390

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              + + +W+       + I +N++ + L +  L + +   I      P ++ +  +E+ 
Sbjct: 391 AACKQLKAWQRTELA-GVRIDVNLSGRQLTNPHLADQILETIEHYGLKPEQLGVELTENE 449

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEK 894
           V G+ E     L RL+  G+ +++DDFGT  S L YL  +P  ++K + S +      E 
Sbjct: 450 VFGSEEDQTRQLERLKAAGLHISIDDFGTGYSSLVYLRKLPVCSIKIDRSFLHYAMENES 509

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +AI+++++ + +++  +I+ + +  E   K +  +GCD+ Q    A P+   +    +K
Sbjct: 510 DMAIMKAMVTVGQSLGLSILVEGVETEQQAKLIRDLGCDFAQGFLYAKPMPAKAAEAFMK 569

Query: 955 ERFPLVKNT 963
              PL   +
Sbjct: 570 ---PLASRS 575


>gi|94263456|ref|ZP_01287269.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93456186|gb|EAT06325.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 730

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/607 (22%), Positives = 245/607 (40%), Gaps = 44/607 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQS-------LAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
              ++ V       Q I    ER           +   GD V         +T       
Sbjct: 124 IAALERVREKKQLRQNIREGEERLQRSEGFLHSVLESLGDAVVVIGRDLRIITANRGYRQ 183

Query: 437 ILGLASGSMHGPIRNWLPYIH------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
             G     + G     + + +        D      ++ +    R     +  R    + 
Sbjct: 184 QSGRGEEEIIGQHCYRISHGYSRPCWLEEDC--VCAVIQAIKEGRPANSIHIHR--DKEG 239

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQDNLTGIPN 543
              ++     P+ + NG I   +    DITE K+  +            AF D LT +PN
Sbjct: 240 VPLYVETNAYPLRDQNGHIYAAVETIRDITEIKELEQEKRAKEAEIERLAFYDFLTDLPN 299

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+   DRL      S         V+ +D+D +K +ND  G   GD +L    RR+ + +
Sbjct: 300 RRLLQDRLEQAFAASERSGQY-GAVIFLDLDNFKNVNDTRGHRTGDLILQMTARRLRDTV 358

Query: 604 KFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINL---------LE 649
           +  D +ARL G+ F I+L +     E    ++   A  +R ++A P  L           
Sbjct: 359 REDDTVARLGGDEFVILLSNLATQSETAISRVGRVAEKIRLALARPFQLTKPQQGSSLES 418

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707
            E  + AS+G A +   + ++ E+ K A+ AMY AK  G N    F  +      +   +
Sbjct: 419 GEFHLGASLGIALFRGHENSAEELFKYADTAMYRAKEAGRNTARFFDPAMQTALEENESL 478

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL  AV   +  L Y P +      ++G EAL++W H   G +S   F+ ++EE  +I
Sbjct: 479 ERDLRRAVVQEQFELYYQPQVDAA-GRLLGAEALLRWYHSARGPVSPLSFIPLSEENGLI 537

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L+   R + +W     +    + IN++++        + +Q +I+     P +
Sbjct: 538 LPIGRWVLQEACRQLATWSQSFPVGDFRLAINVSARQFHQPGFVDEVQEIIAAARVEPRQ 597

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           IKL  +E++V+ + + +   + +L+  G+   +DDFGT  S L+ L  +P + +K + + 
Sbjct: 598 IKLELTETLVLTDLDDTIKKMRQLQAAGLGFAMDDFGTGYSSLAKLKQLPLEQLKIDRAF 657

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          AI  +II M + +   I+A+ +     ++ L   GC   Q  +   PL 
Sbjct: 658 VRDLETDPHDAAIAATIIAMGRTLGFEIVAEGVESAEQLQILQSQGCGIFQGYYFTPPLP 717

Query: 946 FNSILKL 952
                +L
Sbjct: 718 AAKFERL 724


>gi|260223173|emb|CBA33470.1| hypothetical protein Csp_B19220 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 842

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 133/570 (23%), Positives = 250/570 (43%), Gaps = 35/570 (6%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT-----------ILGLASGSMHGP 448
           +     R       S D  W+ D           I                  +G+++  
Sbjct: 285 LQESEARFRALTELSSDWYWEQDAEYRFTRFHGAIQAGRNKTGQHSIGKTRWENGALNMT 344

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              W                 + +  R+   + E R +  + +  W+     P+ +S+G 
Sbjct: 345 EAAW-------------AAHRAVLDARQEFRELELRDKDEEGRVFWISTSGAPIFDSHGV 391

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              Y GI  +ITE+K++ E I   AF D LT +PNR+  +D L   +   A    L   +
Sbjct: 392 FKGYRGIGRNITERKEAEEKIERLAFYDVLTDLPNRRLLMDHLQYAVASCAR-GRLHGAL 450

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS- 627
           + ID+D +K +ND  G  VGD +L  + +R+   ++  D +AR  G+ F ++L   + + 
Sbjct: 451 LFIDLDNFKDLNDTRGHDVGDGLLRVVAQRLKACVRESDTVARFGGDEFVVLLQDLDGTL 510

Query: 628 ----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
               ++    A  + + + +P  L       T SIG       + +  E+LK A+LAMY 
Sbjct: 511 ADAGVQAELVARKILQQLNIPYELPGGSHHSTPSIGVVLIHGLRQSVDELLKQADLAMYE 570

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N +  F  +      +R  ++ DL   ++  EL L   P++   D  +VG EAL
Sbjct: 571 AKSAGRNTLRFFDPAMQSMVAERTELESDLRAGLQRGELMLYSQPVVD-ADRRVVGAEAL 629

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S  +F+ +AE+  +I  +  ++L+     + +W    +   + + +N++
Sbjct: 630 LRWRHPVRGMVSPMQFVPLAEQTGLIIPLGEWVLQTACAQLAAWAHSPDSAHLTLAVNVS 689

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++     E    +Q  I +    P  +KL  +ES+++ + + + + +  LR +G+   LD
Sbjct: 690 ARQFRSPEFVVQVQNAIQQNGADPKLLKLELTESLLLTDSQEAIMKMTALRSLGVRFALD 749

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P   +K + S +    +     AI  +++ + +++   ++A+ + 
Sbjct: 750 DFGTGYSSLSYLKMLPLQQLKIDQSFVRDVLTDVNDAAIASTVLALGRSLGFDVVAEGVE 809

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            E   + L   GC + Q      P+     
Sbjct: 810 TEGQRQFLLNQGCVFFQGYLFGRPVPVAEF 839



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +  +     I G+          N    IH +D       +++           EFR
Sbjct: 183 GRFLFVSDACTAIFGVTPEEARAAPENVFRLIHPDDIVQTLKSMNAA-AVDGMTWAQEFR 241

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGI 541
           +   D     +  +      ++G    Y G   DITE K SL       A    LT +
Sbjct: 242 IIGKDGHVRTLFGKAITYRETDGKYNAY-GSVTDITEHKASLAILQESEARFRALTEL 298



 Score = 47.6 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 17/143 (11%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLA 441
            V +   A    +  +    E       +  +G  +         V   P  +  +  L 
Sbjct: 17  AVAESEQALQDANDELRGQLELFEETESLAQAGHWIV---PQGQTV---PRWSRGLFRLT 70

Query: 442 SGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                  +        IH  D++ +       +  R      EFR    D    W+  R+
Sbjct: 71  QTPWTEKLTLEKSRVGIHPEDKEVYLAA-REAMDGRL----LEFRWIRRDGDVRWVRSRM 125

Query: 500 RPMSNSNGDILRYIGIANDITEQ 522
                 +   + + G+  D TE+
Sbjct: 126 HRYHRQDDSYVDF-GVVQDFTEE 147


>gi|77359917|ref|YP_339492.1| hypothetical protein PSHAa0971 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874828|emb|CAI86049.1| conserved protein of unknown function; putative membrane protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 751

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 143/561 (25%), Positives = 261/561 (46%), Gaps = 17/561 (3%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +    ER +L    V    D +  +D     V   P   T+ G           N    
Sbjct: 182 QLKLTEERLNLFAKCVESLTDALAIYDKNFKLVDINPSFLTLFGGVREQYLKKDFNL--- 238

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                  ++   +   V  R   LQ E ++R + +    + I I  + N    I  Y+ +
Sbjct: 239 --PGYDKSYINTIKKTVYQR-DSLQQEVKLRNSAHVLLPIEISIDEIRNDQNQITNYVVV 295

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+TE+KK+   +   + +D  T +PNR  F   L  +        N    ++V D+D 
Sbjct: 296 YSDLTERKKAESQLHNLSNRDRTTNLPNRNLFFTDLQKL-----GQLNSHHALLVFDLDN 350

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +KKIND LG  +GD +L  L  R+ +L +  D+  RL G+ F +++   N+   I   A 
Sbjct: 351 FKKINDSLGHQLGDSLLAKLAMRLNKLTRENDVFYRLGGDEFALVMSDTNDIYTITRTAK 410

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VES 694
               +IA P  +   E+ +T+S+G   +     T   +LKNA+ AMYHAK +G ++   +
Sbjct: 411 QFLAAIATPFKMAGHELAITSSVGIVLFPEDGNTPELLLKNADTAMYHAKKKGNSYLFFN 470

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++     R+ I+  +   ++ +   + Y P + +   ++VG+EAL+++  PK G IS 
Sbjct: 471 DTMNREAVKRLQIENLMRFGLKENHFAVYYQPKMNIHTGKLVGMEALVRFITPKKGIISP 530

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE   I  I   +L +  RD+  W D        + +N+++K     +L   +
Sbjct: 531 GVFIPIAEETGQIIEIGEVVLNKACRDVKEWLDAGLFNG-RVAVNLSAKQFSLPDLTTRI 589

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ K       ++L  +E  VM +P+ +  ++  L   GI L +DDFGT  S L+YL 
Sbjct: 590 DVILQKNALPSYFLELEITEGTVMDDPKDAIAIMCSLSARGIHLAMDDFGTGYSSLAYLK 649

Query: 875 YIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P +T+K + + +     E+   ++ SI+ +A N++  ++A+ +     I+ L ++ C+
Sbjct: 650 QFPLNTLKVDKAFIDDMKNERGRNMVDSIVTIAHNLDLHVVAEGVEQASQIEILKQLNCE 709

Query: 934 YIQDSHVASPLGFNSILKLLK 954
            +Q  + + PL  +   + LK
Sbjct: 710 TVQGYYYSKPLSKDEFTEFLK 730



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                   ++    +      I++L+   ++  +         +    +R    V GSGD
Sbjct: 21  LYALEATFNLNLNTVAVTASAIIVLVLCYMLTVIYKLKRSRYQLMLSEQRLKSTVEGSGD 80

Query: 417 IVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            +WDW+I   +V            L    +          IH +D      +L      +
Sbjct: 81  TLWDWNIKTGKVLRINDKY-----LMDSILSTEFPPHKSLIHPSDITQVEYLLKKHFAQQ 135

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA- 533
               +  +R++     + W++ R + +  ++N   LR  G   DI++ K + E +   A 
Sbjct: 136 TPFFEATYRIKDHFGGWLWVLDRGKIIEKDTNLSPLRMTGTVRDISQLKLTEERLNLFAK 195

Query: 534 ----FQDNL 538
                 D L
Sbjct: 196 CVESLTDAL 204


>gi|88797137|ref|ZP_01112727.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88780006|gb|EAR11191.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 838

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 139/546 (25%), Positives = 261/546 (47%), Gaps = 14/546 (2%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             S D V+  D  +   T       I G   G + G        I  +        +   
Sbjct: 289 NNSADGVFVLDQHQQFRTCNRVFCDIFGRQKGELLGLP--LFQVIRTDQTQRISQSM--- 343

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                GR   +   +    +   M + +  +   +  +  Y+GI  D +E +++ + +  
Sbjct: 344 --ISNGRWSGDLFSQRRGGERFPMTMTLTTIRREDNSVSHYLGICRDQSESQRTEKELRY 401

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D LTG+ NR  F + +    +           V VI++D++K +N+ LG+ VGD +
Sbjct: 402 LNNYDKLTGLYNRGYFHEIVGQFREHEPLLTE-HYAVCVINLDRFKSVNESLGLEVGDQL 460

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  L  R+  L +    +ARLS + F +I+  E +   +      ++  I  P  + E E
Sbjct: 461 LKDLAARLNNLQEPIRQVARLSSDEFAMIIEFEQDRDMLLSMLEHLQAEITRPFLVGEHE 520

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKE 709
           + VTASIG    T   +T  ++L +A  AM  A+++GGN+ + +      +   R+ +++
Sbjct: 521 LIVTASIGVCVVTEGNLT--QLLNHAIAAMNQARYQGGNNYQFYHQRLATTPLERLQLEK 578

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  AV N+E  + Y P + L    I  +EAL++W HP  G +   +F+ +AEE  +I A
Sbjct: 579 ALRKAVINNEFSVDYQPKMNLHTGIIDSVEALVRWRHPHKGVLDPDDFIPLAEETGLISA 638

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   +L +  ++  +WR Q     I I +N++S  +  N+L + +   +  +      ++
Sbjct: 639 IGEQVLNKACQEAAAWR-QRGFGDISISVNLSSHQIRRNDLYDIIYNALQNSQLPAEYLE 697

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++M +   ++  L +LR +G+ L LDDFGT  S LSYL  +P DT+K + S + 
Sbjct: 698 LELTESMLMEDISHAQDFLNQLRSLGVRLALDDFGTGYSSLSYLKRLPIDTLKIDRSFVA 757

Query: 890 GSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            + +   + I+ +++ M++++   ++A+ +     +  L  +GCDY Q   ++ PL  + 
Sbjct: 758 EARQGETSPIVEAVMAMSESLRLNVVAEGVETREQLHYLESLGCDYAQGYIISRPLPASE 817

Query: 949 ILKLLK 954
           +L L++
Sbjct: 818 VLTLIR 823



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 23/259 (8%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL- 340
            G    SG  C+ +    +        S  R+  +         I +  +     AVL  
Sbjct: 19  WGLTARSGGLCLTLAIAEAGIAGTFLYSHGRLVASVTAAISLIPIPFLFI--NNSAVLFQ 76

Query: 341 --IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS- 397
             +P   LI +     +    +   N++    L   L      +   + Q        + 
Sbjct: 77  VHLPLMALISLGSFSGFRMALRNTRNELESQRLTQLLTDNQAQLQDKIKQRTSEIEQANK 136

Query: 398 -------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                        Q +    E+ +LA+  SG   WDWDI   +V  +       G    +
Sbjct: 137 RLNFEVELRKEVNQALIQSEEQLNLAMTASGIGFWDWDIPHRKVYHSDP-ERFFG-EQSA 194

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRP-M 502
           +     + + Y+   D    R  L   +  +    Q  ++V   +  Q  W+    +   
Sbjct: 195 VDSETFSLVDYVAEPDVPQVRRALAKHLRGQSEYYQMRYQVFLPETAQPRWIEDIGKVTE 254

Query: 503 SNSNGDILRYIGIANDITE 521
            ++ G  +R IG   D+T+
Sbjct: 255 RDARGRPIRMIGTRRDVTK 273


>gi|217970096|ref|YP_002355330.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera
            sp. MZ1T]
 gi|217507423|gb|ACK54434.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Thauera
            sp. MZ1T]
          Length = 1050

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 135/561 (24%), Positives = 248/561 (44%), Gaps = 18/561 (3%)

Query: 402  SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             + ER  LA      S + +   D+    V   P    I G +     G     L     
Sbjct: 478  ENEERLRLAASVFSSSYEAILITDVDNRIVDVNPAFCRITGYSREESLGRDPGMLAS-GR 536

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              R+ +R +  +   +     Q E   R  D      ++ I  + ++ G ++ ++ + +D
Sbjct: 537  QGREFYRAMWQAIEEH--DHWQGELWNRRKDGSEFAEVLSISRVRDARGRVIHHLAMFSD 594

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I+  KK  E +   A+ D LTG PNR+   DRL   +  S         V VID+D +K 
Sbjct: 595  ISRLKKHEEELNRIAYFDPLTGAPNRRLLDDRLRQAIAHSRRTGK-PLAVCVIDLDGFKP 653

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND LG   GD VL+ +  R+G +L+  D +ARL G+ F ++L        +      + 
Sbjct: 654  VNDQLGHEAGDQVLIGIVDRLGAILRASDTVARLGGDEFVLLLEDIEGERVLE----RVL 709

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++I  PI L  +++ V+ASIG   +         +L++A+ AMY AK RG N ++ F  S
Sbjct: 710  EAIRTPIALASQQVCVSASIGVTLFPEDDADPDTLLRHADQAMYRAKQRGRNCIQFFDAS 769

Query: 699  SFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 RV  +    L  A+   E  L + P + ++D   +G+EAL++W HP+ G ++  E
Sbjct: 770  VEEQQRVRKERLERLDQALRRQEFVLHFQPQVDMVDGRPLGMEALLRWQHPERGLLAPGE 829

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+   E   +   +  ++++     +   R         + +N+    L+       +++
Sbjct: 830  FLPDLEGTELETRLGQWVVDHALGALERCRAAGLDIG--VSVNVGPGPLMQAGFVASVRS 887

Query: 817  LISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +     P R++L   ES  + +   +  +L    ++G+ + LDDFGT  + L +   
Sbjct: 888  ALERHPDIPPERLELEILESTALDDMVLAMDVLEACHRLGVRIALDDFGTGYASLRHFRQ 947

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +PFD +K + S +       +  AI+ +++ +A+     +IA+ +        L  +GC 
Sbjct: 948  LPFDRLKIDRSFVLDMLEDGEARAIVGAVVQLARTFGREVIAEGVETPAHAAALLALGCR 1007

Query: 934  YIQDSHVASPLGFNSILKLLK 954
              Q   +A P+    I   + 
Sbjct: 1008 LGQGFGIARPMPVEHIPGWVS 1028



 Score =  101 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 2/169 (1%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +    +  L++ +      + Q   A    +  I  D       +  +    W+W++   
Sbjct: 319 LATLAIVLLLVRLAQRNLALSQANAAARRLAAEIELDRHHLRNVIEATQAGSWEWNLETG 378

Query: 427 RVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                   A +LGLA+    G  R  W   +H  D       LD  +       +++ R+
Sbjct: 379 EWKMDARWAAMLGLAAEDCDGEGRACWRKRVHPADLAEAERELDRHIRGETAFYEHDLRL 438

Query: 486 RAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           R  D ++ W+  R   +  +++G  L   G   DI  +K++ E +   A
Sbjct: 439 RHCDGRWIWVYDRALAVRRDADGRALLLTGAQIDIDRRKENEERLRLAA 487


>gi|332703411|ref|ZP_08423499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332553560|gb|EGJ50604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1040

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 132/581 (22%), Positives = 262/581 (45%), Gaps = 14/581 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                  V       Q +           + SG      +              + GL   
Sbjct: 450  LETFLDVTEHERTKQALAESELLYRTIFMNSGAASLLLNEQGLGSMANEGFFELTGLGPE 509

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            ++   + +W       +  N +  L   VG     L  E  +  A  + H + + +  + 
Sbjct: 510  AVQAGL-HWEDLFPAEEVANIQA-LAGTVGTSGKALCLEATLAHASGKPHSVYLTLARVP 567

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             S+    R +    D+TEQ++    +   A+ D LTG+PNR  F  RL   +  +  +  
Sbjct: 568  GSD----RGVLSMVDLTEQRRYQHELYNKAYFDQLTGLPNRTMFSMRLEAAIVRARREGG 623

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                +M++D+D +K +ND +G   GD++L    +R+ + ++  D++ARL G+ F +++  
Sbjct: 624  G-LAIMLLDLDDFKNVNDTMGHLAGDEMLRKAGKRVNQAVRKDDLVARLGGDEFVVLVER 682

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++   +   A  + ++ A P +L +REI  + S+G A +      +  +LKNA+LAMY 
Sbjct: 683  PHDENLLQRMAARLVRAFAEPFHLGDREIFASTSVGVARFPQDGNDAEAVLKNADLAMYE 742

Query: 684  AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK+ G +    F          +V ++ +L  ++      L Y PI+ +    IVG+EAL
Sbjct: 743  AKNSGKHAYRLFSGEMNARLLRKVNLEAELRKSIGQRRFVLRYQPIVDVASRSIVGMEAL 802

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W       +  S+FM  AEE  ++  ++   LE   R+ + W +     P+ + +N++
Sbjct: 803  LRWIDESGRVVPPSQFMPEAEECGLVVQMDRLALEIACRETLRWTN-GGEVPLKLSVNLS 861

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTL 860
            ++      +   +  +++ T +  SR+ L  +E+ ++ + + +   +L  L   G+S++L
Sbjct: 862  AQHFALGGVESMVTEVLAATGFPASRLGLEITETALIKDLKSATAPVLQALSVKGVSISL 921

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKD 917
            DDFGT  S L+YL ++P   +K +   ++           ++R +I +A+++   ++A+ 
Sbjct: 922  DDFGTGYSSLAYLKHLPISVLKIDRLFVSDIGTPGSDGSVLVRGMISLAESLGLAVVAEG 981

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  E  +  L   GC   Q    A PL   + + LL +  P
Sbjct: 982  VETEEQLAFLRNQGCALAQGFLFAPPLTAQAFMDLLSQGLP 1022


>gi|256830394|ref|YP_003159122.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Desulfomicrobium baculatum DSM 4028]
 gi|256579570|gb|ACU90706.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfomicrobium baculatum DSM 4028]
          Length = 1030

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 144/584 (24%), Positives = 266/584 (45%), Gaps = 14/584 (2%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
              +L  F  I+ +  T      +    ER     L +G      +          +   +
Sbjct: 455  EYLLETFWDIREIERTRRL---LEESEERYRAIFLNTGTPGILINEDTSIDVANTEFLHL 511

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G+    M     +W  + H +D     R               YE R+  +  + H + 
Sbjct: 512  AGVTQDDMRQSP-SWTRFFHTDDVQRMLRYHAQRRQDEAIAPRTYEARLMDSSGELHHVK 570

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            + +  +        + I    DIT+ K +   +   A+ D LTG+PNR S ++RL   + 
Sbjct: 571  LTVAMIP----RTQQSIAFLLDITDIKNAEWKLHELAYTDALTGLPNRLSAMERLDRTV- 625

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             + + +     V ++D+D +K IND  G AVGD VL+   +R+  +LK  +++ RL G+ 
Sbjct: 626  QALSPETGSLAVFLLDLDDFKVINDSWGHAVGDVVLMEAGQRLVSILKTSELVGRLGGDE 685

Query: 617  FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            F I+  + N+  + A  A  +   ++ P    + E  ++ S+G A +     T+ ++++ 
Sbjct: 686  FIIVSDANNSKDEYAQLAQKLIDVLSAPFQFGDSETYLSVSVGVAIFPEDGNTAGQLIRC 745

Query: 677  AELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A+LAMY AK  G N               R+ I+ +L LA+++ E+   + P+I L  ++
Sbjct: 746  ADLAMYQAKSLGKNIYRFHSPELTLKAQRRMEIERELRLALDSGEIVAFFQPVIDLETQK 805

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            IVG EAL +W       IS  +F+ +AE+  +I  I+  +L +       W +      +
Sbjct: 806  IVGAEALARWCKRDGTLISPVDFIPVAEQTSLITDIDFSVLSQACHQARGWDEAGLGR-L 864

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             I  NI+++      L   ++ ++  +   PS++ L  +E+V M N E+ R +L  +  +
Sbjct: 865  RISCNISARHFQRGNLPGEVKRVLEASKLPPSQLTLEVTETVYMENIEQVRSILESIDAM 924

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTI 913
            G+S  LDDFGT  S LSY+  + FD +K + S +    E+   A++R+++ +A ++E   
Sbjct: 925  GVSSALDDFGTGYSSLSYVRSLSFDVLKIDKSFVKNLPEESSLALIRAMLGIAISLEIIP 984

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +A+ I        L  +GC   Q    + P+      +LLK++ 
Sbjct: 985  LAEGIETREQFLLLKSLGCKLGQGYLFSPPVPAAQFQELLKKQN 1028


>gi|146282332|ref|YP_001172485.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145570537|gb|ABP79643.1| sensory box protein/GGDEF domain protein [Pseudomonas stutzeri
           A1501]
          Length = 886

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 136/576 (23%), Positives = 269/576 (46%), Gaps = 21/576 (3%)

Query: 393 TGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           +   +  + ++ ER+  ++A   S   +   D     +      + I G ++    G   
Sbjct: 309 SRDITDRVNTELERRIAAIAFE-SQQGMLITDAQNRILRVNGAFSRISGYSAAEAIGQTT 367

Query: 451 NWL-PYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             L    H  +   +  + +++      G  + E   R    +     + I  + N +G+
Sbjct: 368 ALLASGRHGPDFYRSMWSSIEA-----TGVWEGEIWNRRKSGEIFPEWLTISAVRNVHGE 422

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  Y+    DIT++K + E I   AF D LTG+PNR+  LDRL   + +S   + L   +
Sbjct: 423 VTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRLLLDRLHQAMAVSRRSNQL-GAL 481

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-- 626
           M ID+D +K IND+ G   GD VL     R+   ++  D++ARL G+ F ++L +  +  
Sbjct: 482 MFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASDMVARLGGDEFVVMLENLGDDP 541

Query: 627 ---SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              + +     + +  S+     L E  +  +ASIG   +     +S E++K A+++MY 
Sbjct: 542 LRAAAQAEHIGMKLLNSLDRSYRLNELGLYSSASIGVVLFGGEACSSDELMKRADMSMYE 601

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N +  F         +R+ ++  +   ++N E  L + P +      ++G EAL
Sbjct: 602 AKISGKNALRFFDPRMQLAVQERLRLEAGIRQGLKNGEFVLSFQPQLEQNAG-VIGAEAL 660

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +S + F+  AE   +I A++L +L++    +  W        + + +N++
Sbjct: 661 VRWQHPQRGLLSPAAFIAQAEHAGLIHALDLQVLQQACGQLARWAATPAFADLTLSVNLS 720

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  +   E +  L+ ++  +P+R+KL  +E++++ N   +   + RL++ GI  ++D
Sbjct: 721 AHLLYQDHFVEKLLDLLERSGANPARLKLELTETLLLDNMPEAIARMTRLKQHGIRFSID 780

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +SYL  +P D +K + + +    +   +  I+R+I  +A  +   +IA+ + 
Sbjct: 781 DFGTGYSSMSYLQQLPLDELKIDQTFIRRLPDDASSLTIVRAICALASGLGLEVIAEGVE 840

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  L   GC   Q      P+    + +++  
Sbjct: 841 SGAQRSVLLGNGCHRFQGYLFGKPMPAMELEEMVSA 876



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 90/319 (28%), Gaps = 28/319 (8%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIF----LFMYLHWNRWHAKVGYITFSGIACI 293
            L+    L        R+    A   + + F    +F  L+ +     +     + +  +
Sbjct: 13  LLALCWLLAFTTRSWNRSGQRSAKLLAGLWFGSACIFGMLNTSIGQTGIILDARTAVLSM 72

Query: 294 AILF--CMSFYYPMVTASIARITLASIVLY------YTYFIIYHGMKGYERAVLLIPAWI 345
           A LF   +      V A   R+ +    +            +    +   R  L+  A+ 
Sbjct: 73  AGLFGGPLVAGIAGVLAGGFRLWMGGPGVVPGLANVLLPIALGLAYRCASRRRLIGIAFW 132

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-----------TVIQHVLATG 394
            +  + + L + +   +   ++   L    V  + L               ++  +L   
Sbjct: 133 QLLGFGVLLHLGVLGLIA-LLLPSPLGAEAVREIALPTLLILPLATATLGVLLNDLLERD 191

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +     R         D++   D     +       ++L      + G   +   
Sbjct: 192 RIEQALRFSEARLRAITQAIPDLLLVLDEDGRYLEILCAERSLLYDEPSKLLGRRLH--D 249

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   +   F   +   +     +L  E+ +            R  P+    G     + 
Sbjct: 250 VMPEAEERRFLGFIQQTLNSDSPQL-IEYSLPTL-GGPKVFEGRALPLEQPPGQKRAVVW 307

Query: 515 IANDITEQKKSLEGILCNA 533
           ++ DIT++  +       A
Sbjct: 308 LSRDITDRVNTELERRIAA 326


>gi|186684306|ref|YP_001867502.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Nostoc punctiforme PCC 73102]
 gi|186466758|gb|ACC82559.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Nostoc punctiforme PCC 73102]
          Length = 878

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 236/444 (53%), Gaps = 6/444 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++  E I   A  D LTG+PNR  F + L+  L  +  +      V+ +D+D++K IN
Sbjct: 437 QRQQVEEKIRYQALHDMLTGLPNRLLFNELLSKTLPNATRNSE-SLAVIFLDLDRFKVIN 495

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L ++ +R+ +LL+  D +AR  G+ F I+L    +  ++   A  + ++
Sbjct: 496 DTLGHTLGDQLLKNVAQRLQDLLRGGDTIARWGGDEFTILLPRVTDIEEVTQVAYRILQT 555

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  L   E+ VTAS+G A   ++   +  ++++A+ A+Y+AK +G N+ + + VS  
Sbjct: 556 LEDPFYLQGHELYVTASLGIALLDNNSPDAETLIQHADAALYYAKDKGRNNYQFYSVSLS 615

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +   + +++ L  A+E  E  + Y P + +   EI G+EAL++W HP+ G ++ S F+
Sbjct: 616 AKNPELLTLEKSLRYALEREEFTVFYQPRVNIGTGEITGMEALLRWQHPEMGLVAPSVFI 675

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I AI  ++L        +W+D    PPI + +N++ K     +L E +  ++
Sbjct: 676 PLAEESGLIIAIGEWVLRTACMQNKTWQDSGL-PPITMAVNLSLKQFRQPKLVEIITRVL 734

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      ++L   E+  + +   +R +L  L+++G+++++DDFGT  S LS L  +P 
Sbjct: 735 EQTGLDAHFLELEIMETTAIEDLGFTRTVLEELKQMGVNISIDDFGTGHSSLSRLQLLPL 794

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S M           I+++I+ +  ++   + A+ +     ++ L  + C+ +Q
Sbjct: 795 HNLKIDQSFMRDLQPDSKVAHIIQAIVTLGHSLGLKLTAEGVETAEQLEFLKSINCEEVQ 854

Query: 937 DSHVASPLGFNSILKLLKERFPLV 960
                 PL      ++L+ + P++
Sbjct: 855 GYFFYRPLPEQKATEILESKRPII 878


>gi|256258771|ref|ZP_05464307.1| PAS-associated C-terminal domain protein [Brucella abortus bv. 9
           str. C68]
 gi|260885095|ref|ZP_05896709.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|297247604|ref|ZP_06931322.1| PAS domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|260874623|gb|EEX81692.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|297174773|gb|EFH34120.1| PAS domain-containing protein [Brucella abortus bv. 5 str. B3196]
          Length = 703

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 138/588 (23%), Positives = 242/588 (41%), Gaps = 18/588 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI--VRDRVTTTP 432
           +V         ++Q        ++            V      V+  D+      V    
Sbjct: 112 VVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQ 171

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +T  G       G I      I               V  RR  L  E +V   D   
Sbjct: 172 AASTASGQPIDEAIGSIDLD---IFPEREAAVFAQHGRMVMRRREVLSVERKVEHKDGTS 228

Query: 493 HWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             M I    +    G +    IG+  DITE+++  + ++  A  D+LTG+PNR  F   +
Sbjct: 229 RTMRIIKSSIPPVEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHV 288

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            ++L      D     +  +DID +K +ND +    GD +L  +  R+ ++      +AR
Sbjct: 289 GSLLK--KGSDCDPFALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIAR 346

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I+  S     +IA FA  +  +   P  L      VT S+G A          
Sbjct: 347 LGGDEFAIVYRSGT-LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPD 405

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +++NA+LA+Y +K  G      ++ S   +      +  DL  A+   +  L Y PI  
Sbjct: 406 VLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFN 465

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L    I G EA I+W+HP+ G I   EF+ +AEE  +I  I  ++L+   R+   W +  
Sbjct: 466 LEGGHISGFEAFIRWNHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPE-- 523

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++      + L + +   +     +P R++L  +E+V + N + +  LL 
Sbjct: 524 ---DIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLF 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            LR++G+ + +DDFGT  S LSYL   PFD +K + S ++G     + +AI++++  +  
Sbjct: 581 DLRRLGVRIAMDDFGTCYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA 640

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  A+ +     ++ L       +Q      P+    +   ++ 
Sbjct: 641 GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRN 688


>gi|297584694|ref|YP_003700474.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297143151|gb|ADH99908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 695

 Score =  486 bits (1251), Expect = e-134,   Method: Composition-based stats.
 Identities = 150/583 (25%), Positives = 260/583 (44%), Gaps = 16/583 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I     V +++       Q +    +R       +   +++ D     ++  P    ILG
Sbjct: 105 ITHIIAVTRNITTIENQRQALLRSNQRYQSLFDYNKSGIFELDKNGRFISLNPSGTMILG 164

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +    M     ++   + + D      +    +       Q    +  A+     + +  
Sbjct: 165 MDEKEMMQN--SFHSIVCMEDLPQVSEMFQRSLDGETVDYQTA--IIDANGDRKRLDVTH 220

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            PM   + +++   GIA DIT + +  + I   A QD LTG+PNR +   +L   L    
Sbjct: 221 VPMI-VDYEVVGVYGIARDITSEHRQKKQIEDLANQDQLTGMPNRSAMKRKLKEKLRSHQ 279

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            D      V+V+D+D +K IND +G   GD++++ L++R+ +       + R+ G+ F +
Sbjct: 280 KDG--YVAVLVLDVDDFKLINDSVGHDQGDELILELSKRLDQAFSKRFDIGRIGGDEFMM 337

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT--SSEMLKNA 677
           I     +   + D +  +    + P ++  R   + +S G              +++K A
Sbjct: 338 IGHP-KSRGDLTDISGILDHLFSEPFHIENRNYYLKSSCGITVVNGHNHQRIPEDVMKQA 396

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEI 735
           E+AMY +K RG      +  S   + R M+  +++L L ++   L++ Y PI+     +I
Sbjct: 397 EMAMYSSKKRGRGLTTFYDESMNEASRRMLFLEQELQLILQERGLFVHYQPILDARTGQI 456

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              EAL++W H + G IS SEF+ +AEE  +I  +  F+L+     +  WR       I 
Sbjct: 457 KSFEALVRWHHRQEGAISPSEFIPVAEESGLIHQVGEFVLDESLSMLTKWRKA-GHQDIR 515

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I INI+ K L D  L   +Q  +      P  I+L  +E+VVM N ++ R  L  L+  G
Sbjct: 516 ISINISVKQLEDRSLLTMIQQKLDHYGLLPHDIELEITETVVMENIDKVRHTLDLLQDKG 575

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           I L++DDFGT  S +S L  +PF T+K + S +T      K  AILRS+I +A  +  T 
Sbjct: 576 IYLSIDDFGTGYSSMSSLNRLPFHTIKIDRSFITDVMYVSKSRAILRSMIQLASEMGMTT 635

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955
           IA+ +  +     L   G   +Q  +   P+       K LK 
Sbjct: 636 IAEGVETKEQFDILRTEGVSEVQGFYFTKPVTACEAEEKWLKN 678


>gi|298490106|ref|YP_003720283.1| diguanylate cyclase/phosphodiesterase ['Nostoc azollae' 0708]
 gi|298232024|gb|ADI63160.1| diguanylate cyclase/phosphodiesterase ['Nostoc azollae' 0708]
          Length = 637

 Score =  486 bits (1251), Expect = e-134,   Method: Composition-based stats.
 Identities = 122/555 (21%), Positives = 246/555 (44%), Gaps = 12/555 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTI 467
            +  + D +   D +   V        +  + +  +      +     I   D       
Sbjct: 79  TLESATDAILIVDSLDKIVGFNKKFLEMWDIPALMITSGNYKQALRTAIKKLDNPRHYLS 138

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +   +         E  +   D +      + +     N   +  + I  DIT +K +  
Sbjct: 139 ILRELDENPDIHIGEN-ILFKDGRIFNPFYQQQYKYKKN---IGQVWIFRDITAEKLASN 194

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   +  D LT +PNR    + L   L   + + +    V  +D+D++KKIND LG  +
Sbjct: 195 IINYESLHDILTNLPNRLLLKNLLIDALTKVSHNHS--LGVCFLDLDRFKKINDSLGHGI 252

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  + + I + L+  DI+AR  G+ F I+L   +    I      +  +      +
Sbjct: 253 GDKLLQMVAQCIKKSLRSDDIVARWGGDEFIILLPEISEMYNIDLIQERIFAAFKQGFKI 312

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
               + ++ SIG A +         ++KNAE A+   K +G N+ + ++  ++S  ++  
Sbjct: 313 DNYHLNISPSIGIALYPQHGEDGETLIKNAEAALSFVKLQGRNNYKVYQAAINSQATELF 372

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +++  L  A+E  E  + Y P +     EI  +EAL++W HP+ G I  + F+ IAEE  
Sbjct: 373 ILENSLYNALERQEFKVYYQPQVNSSTGEITKMEALLRWQHPELGLIPPATFIPIAEETG 432

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I+ ++L+       +W+   N+  + + +N + +      L   ++ ++ +T  + 
Sbjct: 433 LILPISEWVLKTACLQNKAWQQTLNLSSLSVAVNFSGRQFQQPNLVGIVEQVLCETKLAH 492

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +E+V M + E ++ +L +L ++G+++++DDFGT  S LSYL       +K + 
Sbjct: 493 RYLELEITETVAMQDVELTQKILRQLDEMGVTISIDDFGTGYSSLSYLKDFSIHALKIDQ 552

Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     K    AI  +II +A  +  +++A+ +  +  +  L  + C+ +Q    + P
Sbjct: 553 SFVQDLANKDHQTAITTAIISLAHGLNLSVVAEGVETQEQLNALRILQCEIMQGYFFSHP 612

Query: 944 LGFNSILKLLKERFP 958
           L      ++L    P
Sbjct: 613 LSAEEATRMLTAYQP 627


>gi|74317384|ref|YP_315124.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056879|gb|AAZ97319.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 738

 Score =  486 bits (1251), Expect = e-134,   Method: Composition-based stats.
 Identities = 138/687 (20%), Positives = 285/687 (41%), Gaps = 17/687 (2%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
                ++   +     L     +   + ++       +         +   ++    A +
Sbjct: 47  PLGWRLSLPTLRVETRLAVAMSHQSPILSTRPAPPRDAATACARSNYVEPTIRSIAGAFI 106

Query: 340 LIPAWILIFI-WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           L    +++    +  LW A    +  ++ Q       V+  +L        +      S+
Sbjct: 107 LACGILVLIKPEWSVLWAATLCFVGFNLFQSGFTQFCVMEKLLKKLRFKSELDEIRTLSR 166

Query: 399 GIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATIL---GLASGSMHGPIRNWL 453
                  R +    +    ++V +     +    +     +L   G  +    G    +L
Sbjct: 167 SHAEAEARAAFYDTLGLLNEVVVELSREGELAFLSEHWTKLLAADGRRNADFLG--LAFL 224

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            ++  +DRD     L + +      +   FR++  D   HW+  +       +G +    
Sbjct: 225 SFVKQHDRDTLEQRLSALLKGESDIVTLRFRMQREDRLEHWVEGKFARHH-KHGQVHGIR 283

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+  D+TE     + I   A  D LTG+PNR     R+   ++ S      +  ++ ID+
Sbjct: 284 GVLRDVTEAYMQEKRISHMAMHDALTGLPNRTYLDARINEAIEQS-RSSATKFALLFIDL 342

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K+IND+ G   GD +LVS+   +   L+  D+LAR  G+ F ++L        +   
Sbjct: 343 DNFKRINDLYGHKAGDQLLVSVGELLRASLRATDVLARWGGDEFVVLLPFPGEIDMVRRI 402

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   +   +    R+  VT SIG A +     ++  +L  A+ A+++AK +G N+++
Sbjct: 403 ASELLDGLRNDLEKQCRDTFVTVSIGVAIYPDDAESAETLLVQADKALFYAKSQGRNNIQ 462

Query: 694 SFRVSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKW 749
            +     R    +   +      AV+ + L + Y P++   +    V +EAL +W   K+
Sbjct: 463 LYADLQTRAPGFEDAEMTARFVAAVKQNLLEVHYQPVMDAANPRCPVSVEALARWHDDKY 522

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G ++ ++F+ +AE + +I  +   +LE+                + + +N++ + L+  +
Sbjct: 523 GWVNPADFIPLAENMGLIHEVGRQVLEQALDHFSK--RNNTCDALKLAVNVSKRQLMSPD 580

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               + A + +    P +IKL  +ES+ +   ER+R LL RL   G +L+LDDFGT  S 
Sbjct: 581 FYPTLLATVERFGVHPRQIKLEITESIALEGIERARALLQRLSDAGFTLSLDDFGTGFSS 640

Query: 870 LSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           LS++  +PFD +K + S +    T +   ++++I+ M   +   ++A+ +        L 
Sbjct: 641 LSHVHELPFDEIKIDISFVRRIKTPEGRVLVKTIVDMGHAMRLALVAEGVEDSETAAILQ 700

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
            MG + +Q  H + P+        +  
Sbjct: 701 GMGVEMLQGYHFSRPMPKEVCADFIAR 727


>gi|83592371|ref|YP_426123.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83575285|gb|ABC21836.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 917

 Score =  486 bits (1251), Expect = e-134,   Method: Composition-based stats.
 Identities = 134/567 (23%), Positives = 244/567 (43%), Gaps = 11/567 (1%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + +       + A    G   +  D+  +    +P+   I GL  G        W   I+
Sbjct: 341 RTLRESDNALAAACEVGGLSTFILDLSANLWMRSPEQEAIFGLD-GRHPRTRDAWHALIY 399

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             DR               G    ++R+    D    W+    +     +  + R +G  
Sbjct: 400 PEDRGGVLDYFAERDALDTGEFDIQYRIIRPSDGAVRWIHGAGKLERAEDLSVRRLVGAI 459

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE K+ L+     A+ D+LT +PNR    DR+   L L+    +L   V  +D+D +
Sbjct: 460 KDVTEIKEDLDRTEFLAYHDSLTNLPNRLLLADRMGQALALAVRRQDL-LAVCYLDLDSF 518

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G +VGD +L+ + RR+ +  +  D +ARL G+ F ++L       ++      
Sbjct: 519 KPINDTWGHSVGDALLIEVARRLQQNARAEDTVARLGGDEFVVLLCGFKAEAEVERVVRR 578

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF 695
           M  SIA P ++  R++T+T S+G  ++       +  ++++A+ AMY AK +G N +  F
Sbjct: 579 MMDSIATPYSVGGRQVTLTVSMGITTFPRDAEQEADALIRHADQAMYEAKRQGRNRIHYF 638

Query: 696 RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                R  +        +  A+E +E  L Y P I L+     G+EALI+W HP+ G + 
Sbjct: 639 DAEKDRLHKERQTYYNRMVAALEANEFQLHYQPTIDLVSGVFSGVEALIRWRHPERGLLL 698

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+   E+  +   +  ++L    R    W+D      + + +N+    L  +     
Sbjct: 699 PGAFLPDIEDTDLTVPLGEWILREALRQKERWQDMG--LSLTVGVNLFGYHLQQDSFVAR 756

Query: 814 MQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             A++++     P  + L   E+  M +       +   ++ G+   LDDFGT  S L+Y
Sbjct: 757 FAAILAEFPAVHPEEVTLEIVETTAMRDLAAISEKMWDCKRFGVDFALDDFGTGYSSLTY 816

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
              +P   +K + S +T      +  A+++SI+ M+  +   ++A+          L R 
Sbjct: 817 FRRLPVTHLKIDRSFVTDILENAQDQAMVQSIVAMSHALGRKVVAEGAETLAHCAALGRY 876

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GCD+ Q   +A P+    I    ++  
Sbjct: 877 GCDFAQGFGIARPMPGEDIFPWARQWN 903


>gi|320010638|gb|ADW05488.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces flavogriseus ATCC 33331]
          Length = 621

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 142/589 (24%), Positives = 269/589 (45%), Gaps = 33/589 (5%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            ++      A   +   +   D+    VT    +  +LG    S+ G     L  +  + 
Sbjct: 33  LAELRDYRAAFGAAALPMAVVDLRGQIVTPNAALGGLLGADPASLTGRPAADLVGLSSD- 91

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                   +  +   R RL+   R++ AD +  W  + + PM +  G   R +    D++
Sbjct: 92  -GPTWRAYNEVLRGTRPRLRCTRRLKHADGRLLWAEVTVVPMGDPAGGAERVLLSVADVS 150

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL--------------DLSATDDNLRP 566
           ++++  E +      D +T +PNR  F +RL   L                 ++    R 
Sbjct: 151 DRRELRERLRHLRMHDPVTRLPNRTLFFERLAGALEAPAAAQAPDSPSAQDGSSAPPGRI 210

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL------KFPDILARLSGNRFGII 620
            +  +DID +K +ND LG   GD +L ++  R+ +            ++ARL G+ F I+
Sbjct: 211 GLCYLDIDGFKAVNDTLGHRTGDRLLAAVAGRLTDCAEADGHRTGGHLVARLGGDEFAIL 270

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   + + ++ + A A+  ++  P  +    ++V+ASIG    +S+  +++ +++ A+  
Sbjct: 271 VEDSSGTHQLTELARAVLAALQQPFEVAGHRLSVSASIGVVERSSADTSATALMQAADTT 330

Query: 681 MYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G      F             +   L  AVE  E  L Y P++ + D  + G+
Sbjct: 331 LYWAKADGRARWTLFDPERNAHRMTRQALSSTLLPAVERGEFTLEYQPLVGMADGIVRGV 390

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFIL 797
           EAL++W+HP++G ++ S F+ IAEE   I  +  ++L         W+ +    P +FI 
Sbjct: 391 EALVRWNHPRFGLLAPSRFVPIAEEDGTIVQLGRWVLRSACLQARRWQLEHPEDPALFIS 450

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+A + L D++L   +  ++++T   P  ++L  +ES VMG+P R   +L  L  +GI 
Sbjct: 451 VNVAVRQLWDSDLVADVAEILAETGLEPGLLQLELTESAVMGSPGRPLRVLQALSDMGIR 510

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNI 909
           + +DDFGT  S L+YL  +P   +K +GS + G        S+     I+ +++ +A  +
Sbjct: 511 IAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRYEDGAHSSPADETIVEAMVQLAHRL 570

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             T+ A+ +      + L R+GCD  Q    +  +    I +L+  R P
Sbjct: 571 GLTVTAECVETSGQAERLRRIGCDTGQGWLYSRAVAPERIAELIGARPP 619


>gi|257095254|ref|YP_003168895.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047778|gb|ACV36966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 640

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 138/587 (23%), Positives = 255/587 (43%), Gaps = 23/587 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +  +         Q +      ++  +      +   D         P    ILG  + 
Sbjct: 20  VSRARKTAERRQADQALRRSEALKASILASLACGIVAADPQGVITACNPCAEAILGYRAD 79

Query: 444 SMHGPI-----RNWLPYIHINDR----------DNFRTILDSFVGYRRGRLQYEFRVRAA 488
            + G +     R+       NDR                L           +    +R  
Sbjct: 80  ELIGKLTPVIFRDSGDPAGPNDRPSQPPHRTGDAGLDAQLARAGSGSTAGERDTTCLR-K 138

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D Q   + +   PM + +G +  Y+    DIT  K++ +GI      D LTG+ NR    
Sbjct: 139 DGQQIAVRLATIPMHDPDGLVSGYVHTLVDITRHKEAEDGIQRLVHADPLTGLANRILLD 198

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            R+   L  +         ++ +D+D++K +ND LG  +GD++L+ +  R+  +++  D 
Sbjct: 199 ARVRQDLSRAHRA-REPLALIFLDVDRFKNVNDTLGHRIGDELLIQVAARLDSIVRDEDT 257

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           L RL G+ F ++L +  ++   A+ A  + K  A    L +  +T T S G A + +   
Sbjct: 258 LCRLGGDEFVLVLPN-TDADGAANVAEKLLKITAPSYRLEQHVLTCTVSAGIAMYPTDGD 316

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHP 726
           + + +  +A+ AMY AK RGGN    F             I+ +L  A+ N EL+L Y P
Sbjct: 317 SVASLSTSADAAMYRAKARGGNAYSFFTAEMQERLARTRQIRNELRRAIANGELHLQYQP 376

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
              +     VG EAL++W H + G +S  EF+ IAE   +  A+  ++L    R +  W+
Sbjct: 377 RFAMAARRPVGAEALLRWQHRQLGMVSPLEFVPIAEGSGLSLALGEWVLRTAIRHMRGWQ 436

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           +++  PP+ + +N+++       L E +  ++ +    P  ++L  +E++VM NP  +  
Sbjct: 437 NRSL-PPMRVAVNLSAAQFRQTNLSERVARILDEEGLPPPFLELELTENLVMDNPLAAIA 495

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            + +LR +G+ ++LD+FGT  S +S L  +  D +K + SL+TG        AI+ + + 
Sbjct: 496 TVNKLRTLGVGVSLDNFGTGRSSMSDLRRLRVDRLKIDRSLVTGLPTDPDAAAIVAATLS 555

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +A ++    +A  +     +  L   GCD  Q + +  P+       
Sbjct: 556 LAHDLGLPTVAGGVESAAQMAFLRARGCDEAQGNLLGPPVVAEQFAA 602


>gi|322419612|ref|YP_004198835.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320125999|gb|ADW13559.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 538

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 211/437 (48%), Gaps = 8/437 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +++ +   A  D LTG+PNR    DRL+  +  +      +  +M +D+D +K +ND LG
Sbjct: 88  AIQQMWYMAEHDVLTGLPNRTLLADRLSQSIAFAQRHGK-KVALMYLDLDHFKHVNDSLG 146

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            +VGD +L S+ +R+   ++  D ++R  G+ F ++L   + +      A  +  ++A P
Sbjct: 147 HSVGDQLLQSVAKRLRASVRLSDTVSRQGGDEFVVLLNEIDEAQDAVLIAKKIIAAMAPP 206

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702
             + + ++ VT SIG + +         +L+NA+ AMY  K  G NH   ++        
Sbjct: 207 HFVSDNQLHVTVSIGISIYPDDGRDVETLLRNADTAMYQTKKTGRNHCHLYQPEMNVQAV 266

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  + + L LA+E     L Y P + L    I G EAL++        +S  +F+ +AE
Sbjct: 267 ARQSVVQALHLALEEGRFVLHYQPKVNLDTGAITGSEALVRVQESDDQMVSPEQFIAVAE 326

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++L    R   +W          I +N++S++    E    +  +++ T 
Sbjct: 327 ECGLILPIGRWVLHEACRQTQAWLQAGLDIG-QIAVNVSSREFHSKEFFNSVITILNATG 385

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS ++L  +ES +M + E + +LL  L+K+GI + +DDFGT  S LSYL   P DT+K
Sbjct: 386 LDPSHLELEMTESGLMLDTEPTMVLLNALKKLGIQIAIDDFGTGYSSLSYLLRFPIDTLK 445

Query: 883 FNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            + S +            AI+ ++I M  +++  ++A+ I     +  L    C   Q  
Sbjct: 446 IDKSFVQDLVNDPGGSGEAIVSAVIGMGTSLKQRVVAEGIETREQLAFLQSHHCVEGQGY 505

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+       LLK+
Sbjct: 506 YFSRPVPAAEFAALLKK 522


>gi|54294439|ref|YP_126854.1| hypothetical protein lpl1508 [Legionella pneumophila str. Lens]
 gi|53754271|emb|CAH15748.1| hypothetical protein lpl1508 [Legionella pneumophila str. Lens]
          Length = 840

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 150/799 (18%), Positives = 322/799 (40%), Gaps = 49/799 (6%)

Query: 193 GIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGY----ISIDFGFLSKLVN 244
            ++   A    +             +SS+ +      +  LG+    + ++ G      +
Sbjct: 54  AVVYNTALCFIVLSLAILFSLNCYYKSSLTLSIIVFVFSGLGFSQHILGVNLGVDEFFFH 113

Query: 245 LPSGELLIW--RACSEIALSSSLIIFLFMYLHWN--RWHAKVGYITFSGIACIAILFCMS 300
                   +  R  +  A    +I    + ++    R            +     +  +S
Sbjct: 114 HYHAFKNAYPGRMAANTAFCFLMISVALIMMNLKCYRSFNNSLAGALGFLVFCLAILFIS 173

Query: 301 FY-------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPAWIL 346
            Y              PM   +     + S      Y+      +     A+  + ++ +
Sbjct: 174 GYFSEIQHAYQWGDKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLFSFCI 233

Query: 347 IFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +  + +     +    RL+        V G + +  L G  +    LA        ++  
Sbjct: 234 MLTFTLLSFEILEKENRLNLSFSIATFVIG-IFLSFLFGLVIRLWQLAKLSAIAAKYAFL 292

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E     +  + D +   D     +        +     G+    I N+L      ++   
Sbjct: 293 E-VEATLESTADGILVVDKESKVINYNQRFLDM--WHQGTNPPRIINYLDIKEEINKQLV 349

Query: 465 RTI-----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                   ++  + +   +  +E +++      ++         + +  I+  +    DI
Sbjct: 350 NKREVIHRINQTIKHPDHQNSFELKLK---GNLYYDCYTQPLKLDED--IIGRVWSFRDI 404

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  K+    +   +  D LT +PN+   +D L   +  + +D  +   V ++D+D++ +I
Sbjct: 405 TIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLGYAMKGAISDKKI-VGVYLLDLDRFTQI 463

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G + GD+++  + +R+ + +    IL R+SG++F I++ S +   +       +  
Sbjct: 464 NDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIREAVFGVTRLLA 522

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P+ +    I ++ SIG + +     T   +L  A++A+   K  G N+ + +    
Sbjct: 523 AFHEPVKMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNFQFYTRDM 582

Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  ++++ +L  A++  E  L Y PI+ L    I G EALI+W+HP+ G +   +F
Sbjct: 583 NTYTLEHILLENELRDAIKKREFVLYYQPILELRSLNISGFEALIRWNHPRNGLLLPEKF 642

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE+ +I  I  ++L  + + I SW+ Q     + + +NI+ K L    L   +  +
Sbjct: 643 IQLAEEIGIISEIGDWVLTTVCKQIKSWQKQGVN-NLKVAVNISPKHLKFRHLPIRINEI 701

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+       I+L  +E++++         L  L++IGI +++DDFGT  S LSYL  +P
Sbjct: 702 LSEFQVKSESIELELTENILIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELP 761

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +      +   A++++II MAKN+   +IA+ I  +  ++ L  +GC Y 
Sbjct: 762 IDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKYQLEILQNLGCHYG 821

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  +   P+      + L+
Sbjct: 822 QGYYFYHPMPPEKCTQFLQ 840


>gi|302541034|ref|ZP_07293376.1| sensory box/GGDEF family protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302458652|gb|EFL21745.1| sensory box/GGDEF family protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 726

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 145/575 (25%), Positives = 259/575 (45%), Gaps = 14/575 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             + A     + + +   +      G+   V    +  + +     +A + G    S   
Sbjct: 150 AALTAREEAEKALHASEAKFQAVFEGAVIGVGIAGLDGEVLVVNDAMARMFG--GASFFR 207

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           P RN   ++H +D      +    V   R   + E      D    W  + +  + +S+G
Sbjct: 208 PGRNVTEFVHPDDAPGVHELYRELVTGERDLFRIEKPHYRDDGSVLWTNLTVTLLRDSHG 267

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                + +A DITE +   E +   A  D LTG+PNR  FL+       L+A  D  R  
Sbjct: 268 APQYQLALAEDITEHRLLRERLRYEATHDELTGLPNRTLFLE--RLDQALAAAADAQRFG 325

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENN 626
           V  +D+D +K +ND LG   GD +L ++  R+   +    +++AR+ G+ F  ++     
Sbjct: 326 VCYLDLDGFKAVNDSLGHVAGDRMLRAVAERLQGCVASPHELVARVGGDEFLALVTGPAA 385

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  M  ++A P+ +  RE+ V ASIG     + +I  +E+L++A++ MY AK 
Sbjct: 386 QADGTAMARRMLAALADPVQVEGRELRVRASIGVVDGRAGEIGRAEVLRSADITMYRAKA 445

Query: 687 RGGNHVE--SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GGN  E      ++    R  +   L  A+EN E ++ Y P++RL D  + G EAL++W
Sbjct: 446 AGGNRYELADDDSNARVIARHSLSNGLPSALENGEFFIEYQPLVRLADGTVRGAEALVRW 505

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ--ANMPPIFILINIAS 802
            HP  G +   +F+ +AE+  +I  +  ++LE+ AR   +W+D        + + +N++ 
Sbjct: 506 LHPVHGVLGPDQFIPLAEDTGLIVPLGRWVLEQAARQARAWQDAPEGEAERLRVNVNLSP 565

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L    L     A++      PS + L  +E+ ++G  E +   L +L  +G+ + LDD
Sbjct: 566 CQLSHPTLVSDTVAVLENAGLCPSALCLEVTENDLIGADEDALRPLRQLADLGVDIALDD 625

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKD 917
           FGT  S LSYL  +P  T+K + S   G          + I+  I+ +A  ++  +  + 
Sbjct: 626 FGTGYSNLSYLRRLPVSTLKLDRSFTRGMQRAPADPVDVKIVEGIVSLAHTLDLAVTVEG 685

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   +  + L  +G D  Q  + A P     +  L
Sbjct: 686 VETAVQAEHLRMLGFDTAQGWYYARPGPPERLHTL 720


>gi|300866894|ref|ZP_07111568.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335083|emb|CBN56730.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 870

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 234/465 (50%), Gaps = 28/465 (6%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T    +    L NAF D+LTG+PNR  F++R+      +         V  +D+D++K 
Sbjct: 402 VTSACVTAYKQLYNAFHDSLTGLPNRALFIERVARAAKNAKHRQYDFFAVFFLDLDRFKV 461

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L++L  R+   ++  D++AR+ G  F I++ +  +       A  + 
Sbjct: 462 INDSLGHVAGDSLLIALVERLKCCVRISDLVARVGGGDFAILIENIKDVATATSVAERIH 521

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKIT--------SSEMLKNAELAMYHAK--HRG 688
           +++ +P NL  +EI +T SIG A   S   T           +L++A  AMY AK    G
Sbjct: 522 EALIIPFNLSGQEILMTVSIGIAVGGSQGETQTGEEDERPEHLLRDAHTAMYRAKALGMG 581

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              V +  + +   +R+ ++ DL +AV+  E  L Y P + L   +I+G EALI+W HP 
Sbjct: 582 RYQVFNAAMHATAVERLQLETDLRMAVKRQEFLLHYQPFVHLATGKIIGFEALIRWQHPG 641

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLD 807
            G +S  +F+ +AEE  +I  I  ++LE   R +  W+ Q    PP+ + +N+++K    
Sbjct: 642 RGLVSPLKFIPVAEETGLILPIGQWVLEEAMRQLRLWQQQFQFDPPLTMSVNLSAKQFSQ 701

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L + ++ ++ +T   P  +KL  +ESVVM   E +  +L +++ + + L +DDFGT  
Sbjct: 702 PDLVKQIKEILQRTGIEPECLKLEITESVVMDEVESAIAVLNQMKALNVKLGIDDFGTGY 761

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST-----------------EKRIAILRSIIPMAKNIE 910
           S LSYL   P DT+K + S +                      +  AI+R+I+ +A  + 
Sbjct: 762 SSLSYLSRFPTDTLKVDKSFVGRMEVGSEGMVEKIANPKSRGGENTAIVRTIVMLAHALG 821

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +     + +L  +GC+Y Q    A PL   +   L+  
Sbjct: 822 MDVIAEGVETAEQLAKLRSLGCEYGQGYFFARPLPSEAATALIAS 866


>gi|228911569|ref|ZP_04075358.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228848072|gb|EEM92937.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 834

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 165/766 (21%), Positives = 312/766 (40%), Gaps = 38/766 (4%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
              +      L   F +  ++L  + I   F   + N              + +  +   
Sbjct: 89  FLSLSIGDIFLSFVFPIIDLLLFLLGISLVFRLTIFN----AKNKLYIFIIVLIGLASTD 144

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP----------MVTASIARITLAS 317
           +L+ Y+  +    +   +         +L  ++   P          ++   +    L S
Sbjct: 145 YLYFYVQ-DELSDRAVILLRCLYRVFLLLIAIAATIPKESFSKRNYFIINPVLGEKILVS 203

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG--LWMAITKRLDNDIIQPALVGGL 375
                   +I    K    +  LI    + F++ +     M +  R         L   L
Sbjct: 204 FPYLAVTILIGFTFKEQTHSSTLIMGNCITFVFVLIRHTIMQMQNRD--------LTKKL 255

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            +    +   + Q        S  +    E+         D +   D     +      +
Sbjct: 256 KVFNSQLEQKISQKTADLIKKSNDLLEKQEKFKSLYEYHPDPILTIDSNGIVLNINQAGS 315

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHW 494
            +LG  S  + G     +      DR      L      R      + RV+  +    H+
Sbjct: 316 ILLGKKSVELIGKEC--ISIFLDEDRFGLEEALKQ--EGRCSSDSLQLRVKNNNVKDVHF 371

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             + I P+         Y+ +  DIT+ K+  + I   AF D +T I NR  F   L   
Sbjct: 372 WSVTIVPIMIERQTFGSYV-MVKDITKMKQQQDEINYLAFHDTVTEIGNRIFFQQELDRS 430

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
              +    + +  ++ ID++++K IND LG ++GD VL  + +R    L     LAR+ G
Sbjct: 431 TKRAQKTQD-KFGLLYIDLNRFKTINDTLGHSIGDRVLKEVAKRFRTCLSPTIPLARIGG 489

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F II+ ++    ++ D    + +    P  + +    ++ SIG A +    I ++ +L
Sbjct: 490 DEFAIIVHNQT-EQQLLDLCETLFRITEEPFVVNQHSFYLSLSIGIAVYPFGGINTTTLL 548

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A++AMY AK +G N V  +    S   + R+ +++DL  A+EN+EL+L+Y P I    
Sbjct: 549 QHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDLPNALENNELFLLYQPQIDSKA 608

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +++G EALI+W HP+ G IS  EF+ IAEE   I +I  + L++    +          
Sbjct: 609 CKVIGAEALIRWQHPELGLISPFEFIPIAEETLQIISIGKWTLQKACHQLKECHSA-GFS 667

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + IN+++ +    +  + + + I +     + I L  +E + M + + + L L  L+
Sbjct: 668 NLKMGINLSAIEFEQKDFVQTIISTIGEIGVPANSIDLELTERIAMVDEQETLLKLKALK 727

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
             GI L++DDFGT  S L+YL   P DT+K     +     +     I+++II +A  + 
Sbjct: 728 SYGIHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRIGTSTDGNEIIQTIISLAHTLN 787

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +IA+ +  +  +  L R  C +IQ  + + PL  +  +  L  +
Sbjct: 788 MKVIAEGVETKEQLAVLQRNACYFIQGYYYSKPLNKDEFINFLNRK 833


>gi|313682319|ref|YP_004060057.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155179|gb|ADR33857.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 592

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/560 (24%), Positives = 252/560 (45%), Gaps = 14/560 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           I       SL    S D +   D     ++  P    + G  S  +   + N +   +I 
Sbjct: 32  IPRSQNLHSLIYFHSNDCIVIADERGVILSVNPAFERLSGYDSSELVNVLPNKIDT-YIK 90

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIAND 518
           D + F   L + +  ++   + E      +  + ++ ++ I+ +   +G   +YI + +D
Sbjct: 91  DGE-FYKALKNAIALKQ-SWEGEITYTDKEGKELYYKLLTIQRIIEEDGS-SKYIAVLSD 147

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++ +++ + I      D LT +PNR  FL  L   L     ++  R  +M ID+D +K+
Sbjct: 148 MSKMEEANQKIWYETNFDALTDLPNRHMFLHHLEQQLSKIERNNFRRTALMYIDLDDFKE 207

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND+ G  +GD +L  +T RI   ++  D+  R+ G+ F +IL    N   +   A  + 
Sbjct: 208 INDMYGHQIGDTLLKKVTTRIISCIRNTDLCFRIGGDEFTVILPDIENLYMVETIAQNIL 267

Query: 639 KSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           K ++ P  L   + + ++ASIG A        S  +LK A+ AMY +K  G N    F  
Sbjct: 268 KELSSPFELENSKNVFISASIGIAIAPDDAADSETILKYADQAMYQSKKSGKNTSNFFAQ 327

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S       R  + +D+ +A    +  L Y PI  +   +I   EALI+W HP    I+ +
Sbjct: 328 SMQDALIKRFQLIKDMHIACAEEQFVLYYQPIFEIKTGQIHKAEALIRWKHPDGYLINPA 387

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEG 813
           +F+ IAEE  MI  I  +++    + +  WR         I +NI+          + E 
Sbjct: 388 DFISIAEETGMILEIGEWIVHEAIKTVSQWRRMY-NERFQISVNISPVQFHQKNGSMPEW 446

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +++   ++   + +  +ESV++ +       L  L    I ++LDDFGT  S LSYL
Sbjct: 447 IK-VLTSDAFAKDSVVVEITESVMLEDSAIVWERLKLLEDAKIEISLDDFGTGYSSLSYL 505

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P+  +K + S +           + + II +A  +   +IA+ +  +     L  M 
Sbjct: 506 KNHPYQYLKIDQSFVKQLEINLSDQILCKMIIDIAHQLNMLVIAEGVETQYHRDILQEMK 565

Query: 932 CDYIQDSHVASPLGFNSILK 951
           CDY+Q   ++ PL  +  +K
Sbjct: 566 CDYLQGYAISKPLPADEFVK 585


>gi|326943146|gb|AEA19042.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 675

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 272/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 118 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQHSNKACESLF--TAYYCEVASYSLVHFIDS 175

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      R   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 176 KDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 232

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KK
Sbjct: 233 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKK 291

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ + +R+   L+  D++AR  G+ F I+L    +       A  + 
Sbjct: 292 INDRLGHDVGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 351

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 352 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 411

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++
Sbjct: 412 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQ 471

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 472 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLISTISK 530

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 531 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 590

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+
Sbjct: 591 PINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 650

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 651 IQGFFISKPVSSKDVWMLLHKK 672


>gi|254449440|ref|ZP_05062877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
 gi|198263846|gb|EDY88116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
          Length = 529

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/513 (27%), Positives = 247/513 (48%), Gaps = 13/513 (2%)

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           RD+   +L   +  +     +EF + +   +   +++      N++G+ +  IG+  D+T
Sbjct: 15  RDSVGKVLSDALNGK-ETANFEFPLFSKSGEQIDVLLNSTTRRNASGEAVGVIGVGQDVT 73

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQK++ + I   A  D LTG+PNR+   DRL   +  S     L   ++++DID++K++N
Sbjct: 74  EQKRANDLIWKQAHYDILTGLPNRRMARDRLEETIKKSRRT-GLPFALLMLDIDRFKEVN 132

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD +LV + RRI + ++  D ++RL G+ F IIL       K    A  + ++
Sbjct: 133 DALGHAQGDLLLVEIGRRITKCVRESDTVSRLGGDEFAIILSDLEQIEKSGHVAQKIIEA 192

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +AMP  L +    V+AS+G     +  + S  +  NA+ AMY AK  GGN V  +  +  
Sbjct: 193 LAMPFRLGDNTSFVSASMGITLSPNDAVDSDTLRVNADEAMYLAKKSGGNRVCHYTKALR 252

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +S+  R  +  DL  A+   ++ + Y PI+ +   +I   EAL++W HP++G +    F+
Sbjct: 253 KSNETRRRMLSDLRGALLKKQIKVQYQPIVEIATGKIFKAEALMRWQHPEFGVVEPKRFI 312

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG--MQA 816
            +AEE  +I  +  ++ +   R++  WR+    P   + +N++      N          
Sbjct: 313 PLAEESGLIHELGDWIFQEATREVARWRELF-DPKFQVSVNVSPVQFRQNGKSHEPLWIR 371

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +   S   + +  +E V++      +  L  LRK GI + LDDFGT  S L+YL   
Sbjct: 372 HLRREDLSGRSLIVEITEGVLVKAEMSVKENLLLLRKAGIQVALDDFGTGYSSLAYLKTF 431

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +          A+   II MA  +   +IA+    E  +  L   GCDY
Sbjct: 432 DIDYLKIDQSFVRNMGADTDDQALCEGIIVMAHKLGLKVIAEGGETEKQLSILESFGCDY 491

Query: 935 IQDSHVASPLGFNSILKLLKER----FPLVKNT 963
            Q    +  +   ++  +L+++     P+    
Sbjct: 492 AQGWLYSKAVTAENLEIILQKQADAALPVSGRA 524


>gi|196250282|ref|ZP_03148975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. G11MC16]
 gi|196210171|gb|EDY04937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. G11MC16]
          Length = 802

 Score =  485 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 141/584 (24%), Positives = 266/584 (45%), Gaps = 23/584 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            V I +L+    I   +      + + ++ +R       + + V         V      
Sbjct: 230 AVSIYLLVLHRQIGRKV-LAAHKKTLAANEQRLRQLAEMTMEGVIVC-ASGKIVEVNEAA 287

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG     +         ++ IND     ++  S       R + E R    D     
Sbjct: 288 CRLLGYRESELV--------HLPINDVVVDGSMRPSCSNNGVERFEIELR--RKDGAVFP 337

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             I ++   +  G  +  + +  D+T QK++ E +      D LTG+ N+++    +   
Sbjct: 338 AEI-VQHCYDDEGQKVTVVAV-RDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERR 395

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +    +    VM++++   K IND  G AVGD+VL+ L RR  E  +    + R SG
Sbjct: 396 LADAKR-FHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSE--QEGITVGRWSG 452

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           N F  +L   +++ K  + A  + +    PI +   E+ VT ++G + +      +  ++
Sbjct: 453 NEFIAVLPD-SSNEKAEEAAKRLIEVADEPIAVNGLELYVTVNVGISVYPKDGEETKTLI 511

Query: 675 KNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++A Y A+ +        +  ++    +++ ++ DL  A+E  E  L Y P IRL D
Sbjct: 512 RKADIARYEAREKVVSDFLFFNELMADRLHEKMAMERDLRRALEREEFELYYQPQIRLYD 571

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +++G+EALI+W HP+ G I  S F+ IAE+  MI  IN +++    +      DQ    
Sbjct: 572 RQVIGMEALIRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPH- 630

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++  +       + +  L++ T   P  + L  +E + M + E +  +L +L+
Sbjct: 631 -LSVSVNLSPYEFESRRFVDKLARLLADTGLPPHHLDLEITERMTM-DTEHAFDILSKLK 688

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETT 912
            +G+++++DDFGT  S LSYL  +P D +K + S +     K+  IL SII +  NI   
Sbjct: 689 SLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDRSFVQHIQGKKDVILPSIIRLGHNIGVK 748

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++A+ +  E +   L    CD  Q  + + PL +   ++ L E+
Sbjct: 749 VLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQ 792


>gi|326779157|ref|ZP_08238422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659490|gb|EGE44336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
          Length = 641

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 142/622 (22%), Positives = 275/622 (44%), Gaps = 29/622 (4%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +    +       +   V                    I S+      A   +   +   
Sbjct: 18  VPPAPVTERHAAAMDPAVTDPPTGSPGGAPPPPDDGDPIASELRDHRAAFNAATLPMGVV 77

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     V     +  +LG A+  + G   + L  +  +DR          +  RR R + 
Sbjct: 78  DGRGHVVRANEALGGLLGTAAAVLAGRRASELLDLASDDRT--WHAYREVLLGRRSRFRC 135

Query: 482 EFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
             R++  D +  W  I + PM+ +   +  R +    D++++++  E +      D +T 
Sbjct: 136 TRRLKHPDGRSLWAEITVVPMTGASAAEPARVLLTVADVSDRRELQERLRHLQMHDPVTR 195

Query: 541 IPNRQSFLDRLTTILDLSA-------TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           +PNR  F +RL + L+             + R  +  +D+D +K IND LG   GD +L 
Sbjct: 196 LPNRTLFFERLASALETPPYQDDSMPPRQHARIGLCYLDLDGFKAINDTLGHRTGDRLLA 255

Query: 594 SLTRRIGELLKFPD--------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           ++  R+ +  +           ++ARL G+ F I++     + ++A+ A ++  ++  P 
Sbjct: 256 AVAARLTDCAENDASRRPGGSRLVARLGGDEFAILVEDSAGTEELAELARSVLAALQQPF 315

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR- 704
           +L  + ++V+ASIG    T++  + + +++ A+  +Y AK  G      F          
Sbjct: 316 DLAGQRLSVSASIGVVERTAAGTSPTGLMQAADTTLYWAKADGKARWTLFDPERNAHRMT 375

Query: 705 -VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +   L  AVE  E  L Y P++ + D  + G+EAL++W+HP++G +  + F+ IAEE
Sbjct: 376 RQSLSSTLRPAVERGEFTLEYQPLVGMADGVLRGVEALVRWNHPQFGVLPPNRFVQIAEE 435

Query: 764 LCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              I  +  ++L    R    W  D  + PP+FI +N+A + + D++L   +  ++++T 
Sbjct: 436 DGSIVQLGRWILRTACRQARRWELDHPDEPPLFISVNVAVRQVWDSDLVADVAQILAETG 495

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P  ++L  +ES VMG+  R    L  L  +G+ + +DDFGT  S L+YL  +P   +K
Sbjct: 496 LAPGLLQLELTESAVMGSGGRPLRALQALSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLK 555

Query: 883 FNGSLMTG--------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            +G+ + G         +     I+ +++ +A  +  T+ A+ +      + L R+GCD 
Sbjct: 556 LDGAFVKGFRYEDGTHPSPADETIVEAMVQLAHRLGLTVTAECVETAGQAERLRRIGCDT 615

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q    +  +    I  L+  R
Sbjct: 616 GQGWLYSRAVAPEQIAGLIGSR 637


>gi|150395798|ref|YP_001326265.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Sinorhizobium medicae WSM419]
 gi|150027313|gb|ABR59430.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 772

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 130/443 (29%), Positives = 226/443 (51%), Gaps = 7/443 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ + I   A  D LTG+PNR  F +++  +L+     D     +  +D+D +K IN
Sbjct: 332 ERKRAEDRISFLAHHDALTGLPNRVLFEEQVDGMLEEIRERDQC-AVLAFLDLDNFKLIN 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
           D LG A GD++L ++  R+   ++  D + R+ G+ F I+L         +      +R 
Sbjct: 391 DSLGHAAGDELLKAVAGRMRASVRKADFVVRVGGDEFIILLNGLPKERDIVLSRLEDIRS 450

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +IAMP+ L  R + V+ S+G A + +   T+ E+L NA++AMY AK  G ++++ F    
Sbjct: 451 AIAMPLQLQGRSLQVSCSMGVACFPNQGRTAGELLANADMAMYRAKELGRDNIQVFTEEM 510

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +R+  +E+L  A+   E  L + P + L    I   EAL++W+HP  G IS S F
Sbjct: 511 AARAHERLQWQEELREALAGEEFLLHFQPQMNLGTGRIFAAEALLRWNHPVRGIISPSVF 570

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  + L    R + +W+D    PP+ I +N++++   +      +  +
Sbjct: 571 IPLAEETGLIVPIGDWALRAACRQLKAWQDAGL-PPLIISVNVSARQFRERNWASRVAEI 629

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T      ++L  +ES++M +   +   +  L  IG+ L +DDFGT  S LS L   P
Sbjct: 630 LKETGLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFP 689

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +T        +AI  +II +A+ +   +IA+ +  E  ++ L + GCD I
Sbjct: 690 VRRLKIDRSFVTDIPLDADDMAITSAIISLAQKLGLRVIAEGVESEAQVEFLQKAGCDEI 749

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q    + PL   +   LL    P
Sbjct: 750 QGYFFSRPLSAEAFESLLSSARP 772



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFR 465
               +    D ++  D     +          GL S   + G     L   H ++     
Sbjct: 53  LEAMINHVPDYIYAKDTEGRFLIANEVTVADNGLESLQDLVGKTDFDL---HPHEFAQAV 109

Query: 466 T-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                  +         E R      +  W++    P+ + +G I+  +GI+ DIT++K 
Sbjct: 110 AGTERRVLETGEPIFGIEERAIVTKGRDRWLMTSKVPLRSKSGKIIGIVGISRDITDRKS 169

Query: 525 SLEGILCNAF 534
           +   +   A 
Sbjct: 170 AERLLEGQAR 179


>gi|300782315|ref|YP_003762606.1| signal transduction protein containing EAL, PAS and GGDEF domain
           [Amycolatopsis mediterranei U32]
 gi|299791829|gb|ADJ42204.1| signal transduction protein containing EAL, PAS and GGDEF domain
           [Amycolatopsis mediterranei U32]
          Length = 773

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 268/580 (46%), Gaps = 16/580 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           + + +    +          +      E+     V    + V             P    
Sbjct: 199 LAVRVSAAEMNDGYVLVCADETARRRAEQNYRTVVASLDEGVLVMGPGGLIEAANPAACR 258

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHW 494
           ILG+A   + G   + L     + +      + S    R G        R+R  D +  W
Sbjct: 259 ILGVAEADLIGVPCHTLTLFTESGKWIPPEEMPSVQTRRTGVTHNGLVVRLRRPDGRDVW 318

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +  R ++  +   +  +    DITE +     +  +A  D LT + NR         +
Sbjct: 319 VSLTSRLLAPDDPAAMAVVTSFTDITETRAISAQLAYDATHDPLTRLANRTL-------V 371

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L      +    TV+ +D+DK+K IND LG +VGD VL  +  R+       D++ RL G
Sbjct: 372 LGGLDARERGAVTVLFLDLDKFKVINDSLGHSVGDQVLRIVGERLRRSSGRDDLVGRLGG 431

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEM 673
           + F ++     + +++   A  +R ++A PI +L R++ + ASIG        + ++ ++
Sbjct: 432 DEFVVVTAEVTDPVEVHALAEHLRAALAEPIGVLGRQLHLDASIGVVLVGRDDRRSAEDL 491

Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L++A++AMY AK  G      F V        R+ +++DL  AV + +L+  Y P++ L 
Sbjct: 492 LRDADVAMYQAKSLGRGRHHFFDVGLRERMQRRLRMEQDLRYAVHDGQLWPAYQPVVDLR 551

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             E+V +EAL++W HP+ G IS +EF+ +AEE  +I  I   ML    R++ + R     
Sbjct: 552 TGEMVAVEALLRWTHPRHGAISPAEFIPLAEESDLINVIGKEMLRATTRELAA-RRVQQG 610

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++++ L D  L   +Q  ++ T      + L  +ES +M + E +  +L  L
Sbjct: 611 LDLTLKVNLSARQLDDPHLVPAVQDALAATGLPAGALCLEVTESALMRDQEAAAEVLASL 670

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909
           R +G+ L +DDFGT  S L+ L  +  DT+K + S +TG  E     AI+ SII MA  +
Sbjct: 671 RSLGVLLAIDDFGTGYSSLAQLRRLTLDTLKIDRSFITGIAESRDAEAIVTSIIAMAHAV 730

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + T+IA+ +     ++ L  +GCD  Q  H+  P+    +
Sbjct: 731 DLTVIAEGVESAEQLELLRALGCDQAQGYHLGRPVSAAEL 770



 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 17/153 (11%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +++ +G    Q V+      +        Q+  V    D +          +  P    +
Sbjct: 95  VLVRLGEAAYQVVMRDITAKKAAADALRYQAALVSHVSDALIATTGEGVVTSWNPAAEAV 154

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G  +    G   +          +     LD     R G +  E   R  D     + +
Sbjct: 155 YGWTAAEAVGRRAS----------ELVGAPLDLPAIRRGGGV-AEAVHRHRDGAPLAVRV 203

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               M++       Y+ +  D T ++++ +   
Sbjct: 204 SAAEMND------GYVLVCADETARRRAEQNYR 230


>gi|257059243|ref|YP_003137131.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256589409|gb|ACV00296.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 840

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 137/564 (24%), Positives = 259/564 (45%), Gaps = 13/564 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPY 455
              + +  +R  L V  + + +   +      +        +LG  +  + G   + L  
Sbjct: 279 EAKLTTGKDRYRLFVEQATEGILLVNCETQYIIEANQAYCHLLGYTTAEIIGLSLHQLIA 338

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I   D+      L S V         E   R  D     +  +I   +    +I  +  +
Sbjct: 339 I---DKAIIDQEL-SCVTSETPYFIKESIHRHKDGSLISVSGKINRTTYQGQEI--FCLV 392

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI ++K++ E +   A  D LT +PNR+SF  +L   LD +    +L   VM +DID 
Sbjct: 393 IRDIRDRKQAEEQLQYQALHDPLTNLPNRESFNQKLVLALDHAQRYQHL-MAVMFVDIDS 451

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +  IN+ LG ++GD +L S  +R+   ++  D +AR   + F ++L    N+      A 
Sbjct: 452 FTNINNTLGPSIGDRLLDSFGKRLSSCVRTGDTVARWGSDEFVLLLPQIKNTEDTVKLAQ 511

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++ +P  L +  + V  SIG A +         +LKNA  A+   K +G NH + +
Sbjct: 512 RIFDNLQVPFILDDHRLPVKCSIGIAVYPQDGEAGETLLKNAGTALGRTKEQGRNHYQFY 571

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  S  +  + ++  L   +E  + +L Y P I L  +++VG+EAL++W+HP  G I+
Sbjct: 572 NPNLSSEAALLLRLESLLHQGLEKKQFFLHYQPQINLKTKKVVGMEALLRWEHPSLGIIN 631

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AE+  +I  +  ++L+      ISW+     PPI I +N++++++    L E 
Sbjct: 632 PQKFIPLAEKTDLILHLGKWVLQTACEQNISWQKDGL-PPISIGVNLSAREVQQPNLAEV 690

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +++     P  ++L  +E  +  +  ++R  L  L+ +G+ + LDDFGT  S L YL
Sbjct: 691 VARVLNDIGLDPQWLELELTEMSLRQHLTQARKSLRDLKNLGVRIALDDFGTGFSSLGYL 750

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               F T+K + + +           I+ + + ++K     I+A+ +  E  +K L+ + 
Sbjct: 751 QQFSFRTLKLHQAFIRDLRGTSEELGIISAALAISKGFNMRIVAEGVETEEQLKILSNLN 810

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+ IQ    + PL        L+ 
Sbjct: 811 CEEIQGYCFSRPLPVKEATVFLQN 834


>gi|307824938|ref|ZP_07655160.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
 gi|307733985|gb|EFO04840.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacter tundripaludum SV96]
          Length = 1572

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 208/439 (47%), Gaps = 6/439 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K+  + +   A  D LTG+PNR+ F +RL   +  +         V+ ID+D++K++N
Sbjct: 1134 ERKRIEQQMYRQASYDQLTGLPNRRLFGNRLREEIVKAER-GAYSLAVLFIDLDRFKEVN 1192

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG   GDD+LV   +RI   ++  D +ARL G+ F +IL   +  +     A  +  +
Sbjct: 1193 DTLGHDAGDDLLVEAAQRIRLCVRESDTVARLGGDEFVVILPKVDEIVPQDRVAQCIVDA 1252

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
            +  P  L E+   V+ASIG A +      +  ++  A+ AMY AK  G N    F     
Sbjct: 1253 MVRPFLLGEQNAYVSASIGIAGYPQDADNAEVLIGCADQAMYVAKSMGRNCFSFFTHGML 1312

Query: 700  -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+ +  DL  A++  +L + Y PII ++  + V  EAL++W HP+ G +    F+
Sbjct: 1313 EQARHRLELVNDLRGALDAGQLEVYYQPIIEVVSGKAVKAEALLRWHHPELGMVPPDRFI 1372

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQAL 817
             IAEE  +I+ I  ++    A     W   +    +  I +N++ +    +   +     
Sbjct: 1373 PIAEETDLIQEIGAWVFREAADTAKRWHGLSEEDGVGQISVNMSPRQFTKDSGVQTFIDY 1432

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + +    PS + +  +E +++ +       L  LR  GI L+LDDFGT  S ++YL    
Sbjct: 1433 LQEAAIDPSYLVVEITEGLLLDDCSAVTEKLELLRAAGIQLSLDDFGTGYSAMAYLKKFN 1492

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + S +          AI  +I+ MA  +   +IA+ +  E     L  +GC+Y+
Sbjct: 1493 IDYLKIDRSFVRDLETDPGDRAIAEAIVVMAHRLGLKVIAEGVETEGQRALLMAVGCEYV 1552

Query: 936  QDSHVASPLGFNSILKLLK 954
            Q    A P+   + L  + 
Sbjct: 1553 QGYLYAKPMPVEAFLAYVA 1571



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 62/187 (33%), Gaps = 3/187 (1%)

Query: 342 PAWILIFIWFIGLWMAITKRL--DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
             W  +      + +    +      I+       +V       F +++ +         
Sbjct: 657 QHWGELISGMSTITLETRHQTKEGGIILLEVNANPIVYQGRYYNFALVRDITERKQMETE 716

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +        + V  S D ++ +D    R+   P +  ++G  +  +   + +    +   
Sbjct: 717 LRQRELEFRVLVENSPDPIFRYDRDCRRIYANPAVEKLVGCPASQLINRMPSDASVVSAY 776

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           + +     +   +       + E    A D Q H+   R  P     G++   I IA DI
Sbjct: 777 EGEKLVQAIRQVLET-GLTAESEVEFIADDGQRHYFHNRYAPEFGPQGEVAGVISIARDI 835

Query: 520 TEQKKSL 526
           TE+K++ 
Sbjct: 836 TERKQAE 842



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  I  + GL+   +           H  D       L+   G +    + E R+   
Sbjct: 499 FASAGIEALFGLSPEDIRDDAEVLRARYHPEDLPRVIAQLEKS-GRKLSPYRIEIRILHP 557

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                W+ IR  P    +G    + G+  DITE+K S E     A  D
Sbjct: 558 HKGLRWIEIRSTPQRQPDGS-TEWHGLMIDITERKASDEQ---LALLD 601



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 10/138 (7%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
              +  E+ +L   A+   G+ V+  D     +    + + +LG     +       +  
Sbjct: 589 ERKASDEQLALLDYALDHVGEAVYLTDEDSRILQVNEEASRMLGYTRAELLEMRIVDIDL 648

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +       +R      +      +  E R +  +     + +   P+    G    +  
Sbjct: 649 DLGPE---RWRQHWGELISGMS-TITLETRHQTKEGGIILLEVNANPIV-YQGRYYNF-A 702

Query: 515 IANDITEQKKSLEGILCN 532
           +  DITE+K+    +   
Sbjct: 703 LVRDITERKQMETELRQR 720



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 29/241 (12%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            V  ++ +  T     L      Q IF   +     +    D V+  D     +      
Sbjct: 313 AVTSMLQLVATSAAAELERRQSEQAIFESRQFLVRVIDAIADPVFVKDREHRWLLLNQAC 372

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             ++G +   + G   +                 D  V         E  +         
Sbjct: 373 CELIGHSRAELLGKSDSDYF---PEHEARALQEGDDAVFDSGLENGSENEITDGQGVKRT 429

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +        ++NG  +  +GI  DITE+K+    +L  A                +L   
Sbjct: 430 ISTTKSCFLDNNGQPV-LVGIIRDITERKQYELNLLKRA----------------QLEEQ 472

Query: 555 LDLSATDDNLRPTVMVIDIDK-----YKK--INDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L   A         + + +D      +    I  + G++  D  +      +       D
Sbjct: 473 LSCLADSVPGFIYTIRLSLDGHASFPFASAGIEALFGLSPED--IRDDAEVLRARYHPED 530

Query: 608 I 608
           +
Sbjct: 531 L 531



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 70/203 (34%), Gaps = 23/203 (11%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            + G   I   +     ++ +    ER     V     +V  +D    R+   P  + I+G
Sbjct: 825  VAGVISIARDITERKQAENLRHQRERELRTLVENLPTMVVRYDRNFQRIYVNPAYSQIIG 884

Query: 440  LASGSMHGPI--RNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
                 M G    ++W    I         + +      ++  +  E+     D +    +
Sbjct: 885  RTEAEMFGSPLKKSWRATNISAESYQAILSGV--MRSGKKAEVSLEW--TDGDGRLISHV 940

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKS-------LEGILCNAFQDNLTGIPNRQSFLD 549
            ++I P  +++G I   + +  D++++++               A  D      N    L+
Sbjct: 941  MKIVPECDADGKIDSVLALGFDLSDRRQQQVVEANRQRVFEKMAHGD------NINGILE 994

Query: 550  RLTTILDLSATDDNLRPTVMVID 572
            ++   ++ S         ++++D
Sbjct: 995  QVALYVESSK--SGRYCAILLLD 1015


>gi|254502187|ref|ZP_05114338.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11]
 gi|222438258|gb|EEE44937.1| hypothetical protein SADFL11_2225 [Labrenzia alexandrii DFL-11]
          Length = 1020

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 137/620 (22%), Positives = 249/620 (40%), Gaps = 18/620 (2%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           A        + +   I    +  +        L           + + +A     Q    
Sbjct: 388 AMTEAAFTALLVGDGIDGFENRYVCACGAAKYLRWSARSDVDRQLIYAVAQNITEQK--K 445

Query: 403 DGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
                 LA      S + +   DI    V        I G     + G   + L     +
Sbjct: 446 AENALKLAANVFTHSDEGIIITDINGAIVDINEAFTDITGYERDEILGNNPSILSS-GKH 504

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D D ++T+       + G  Q E   +  D       + I  + + +G+   YIG+  DI
Sbjct: 505 DADFYQTMWSKLR--KDGVWQGEIWNKRKDGDVFAERLTISAIEDESGNTTNYIGLFVDI 562

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+ K     +   A  D LTG+PNR    D +   +  +    +    +  ID+D +K +
Sbjct: 563 TKMKAHERQLEHLARYDRLTGLPNRVLLADNMQQAMARARRHGHT-LAIAFIDLDGFKAV 621

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G A GD++LVS+  R+ ++L+  D LAR+ G+ F  I+    +          +  
Sbjct: 622 NDTYGHAAGDELLVSVAHRLTKVLRTEDTLARIGGDEFVAIITDLPDEKSCVSTLNRILD 681

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +    L     +V+ASIG   +  ++     ++ + A+ AMY AK  G N  + F   
Sbjct: 682 AASKEFKLGAATASVSASIGVTFYPQTEEIDGDQLERQADQAMYEAKISGRNQYKFFDPE 741

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R   +      D   A++     L Y P IRL  +E++G EALI+W HP+ G +    
Sbjct: 742 QDRRLTEYYAQVADAKKALKTDAFRLHYQPKIRLATKEVIGYEALIRWQHPEKGLLMPGA 801

Query: 757 FMLIAEEL-CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           F+   E    +   +  ++L+     I  W +        + +N+++  L  ++  E + 
Sbjct: 802 FLPPIERHPDVAIELGNWVLDNALEQIERWNEVGLDT--TVSVNVSALQLTSSDFEETLN 859

Query: 816 ALISKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             + K   + P ++++   E+  + + ER   ++   R   +   LDDFGT  S L+YL 
Sbjct: 860 KHLQKHPAAEPCQLEIEILETDALSDIERVSKIIRNCRLSSVRFALDDFGTGYSSLAYLK 919

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P DT+K +   +  S    +   +L+ II + +     ++A+ +      + L   GC
Sbjct: 920 QLPIDTLKIDQGFVHDSLNNAQDQELLKLIISLGRVYNIDVLAEGVETPAHAELLHTYGC 979

Query: 933 DYIQDSHVASPLGFNSILKL 952
            Y Q    A P+  + +L  
Sbjct: 980 RYAQGYAFARPMPADDVLDW 999



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 9/194 (4%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI--LIGFTVIQHVLATGYFSQGI 400
             + I      +++       +       +  L LI +   +   V           +  
Sbjct: 269 GMLAILATLTVVFLVWRYFTLSSFNNRLRLSKLQLINLNETLETRVRNRTRELSEEVEER 328

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                        S  +    D     +         LG     +      ++ ++H  D
Sbjct: 329 KRSQRDLETFFNQSQSLNLIVDFKGRILRLNDSWEDFLGYELKEVAERP--FIEFVHPED 386

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R        + +    G   +E R   A     ++    R  S+ +  ++  +    +IT
Sbjct: 387 RAMTEAAFTALLVGD-GIDGFENRYVCACGAAKYLRWSAR--SDVDRQLIYAVA--QNIT 441

Query: 521 EQKKSLEGILCNAF 534
           EQKK+   +   A 
Sbjct: 442 EQKKAENALKLAAN 455


>gi|242239488|ref|YP_002987669.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
 gi|242131545|gb|ACS85847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
          Length = 718

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 243/577 (42%), Gaps = 21/577 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T++   L          S           S D V   +               L     
Sbjct: 152 ATLVMDRLEMRRLDLARKSSQACFESVSESSPDSVLCVNDKGIITYWNQAAEKCLEYTGE 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIR 500
            + G     +  I  +    F   L      +    +    E   R        + + + 
Sbjct: 212 QIIGEH---ISTIIPD---MFVVQLHHLATDKVSLFRKSAMELEARTLSGTLVPVELSVS 265

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                N +  RY  I  D+T++K+  E +   A +D LTG+ NR      L  +L     
Sbjct: 266 --MWQNDNQTRYGAILRDVTDRKRYEERLFLQAHRDPLTGLANRTLLASTLDHVLK---- 319

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             +L   V++ID+D +K IND LG + GD++L S+ +R+    +  D++AR+ G+ F ++
Sbjct: 320 -SDLAVAVLIIDLDGFKDINDSLGHSSGDEILTSVAKRLQANARPEDLVARMGGDEFAML 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   N    +AD A  +   I+  + +  ++I ++ASIG     S  +TS ++L +A+LA
Sbjct: 379 LPGLNTEELVADLAERIINDISQAVQIDNQQINISASIGIVMSPSHGMTSQDLLTSADLA 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y A+  G N    F        +      L    A E  E  + Y P + L+  ++VG 
Sbjct: 439 LYKAQSDGRNCYRFFTRELREVFQARHAFQLEFIRAYEQKEFEVFYQPQVSLISNKVVGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G ++ + F+   E     + I  +++E   +    W          I I
Sbjct: 499 EALLRWRHPYKGLLTPAVFLSALERGPWAERIGDWVVETACQQAAEWYK-GGAENFRISI 557

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+ +       L + +Q++++K+   PS ++L  +E++++   E     L  LR +G+ +
Sbjct: 558 NLFAAQFRSGMLAQKIQSVLAKSGLKPSSLELEITENIILRYDENMLKPLNELRSLGVGI 617

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             DD+GT  + LS L   P   +K + + +    +     AI+R+I+ + K+    +IA+
Sbjct: 618 AFDDYGTGYASLSMLKNYPVTRLKIDQTFVRTMCDSAPDAAIVRAILYLGKSFGLDVIAE 677

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  E   + L   GC+  Q      P+      KLL
Sbjct: 678 GVETEEQCERLRNKGCEQAQGYLFGHPMPSTEFEKLL 714


>gi|119715377|ref|YP_922342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardioides sp. JS614]
 gi|119536038|gb|ABL80655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardioides sp. JS614]
          Length = 883

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/574 (22%), Positives = 253/574 (44%), Gaps = 11/574 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L                Q   +   R +  V    D V+   I     +       + G 
Sbjct: 121 LRRVRRAVEHARVRAALQESEAAVARLTGIVESVADAVFTTTIDGLVTSWNDGAEALYGF 180

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            +  M G     +  +H    D  R IL      +  +     R R  D +   + I + 
Sbjct: 181 PAAEMLGAP---IATLHPPGSDEPRRILTMVRAGKAIQGLDTLR-RTRDGRMAQVSISVT 236

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +    +   + +A DI+++ +    ++     D LTG+PNR     RLT  +     
Sbjct: 237 GLRDHRDGLSGMVVVARDISDRLELEAELVRQTMHDALTGLPNRSFLTYRLTQAIAEGRR 296

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ +D+D+++  NDV G   GD VL  +  R+  L +  D++AR+ G+ F ++
Sbjct: 297 RGRPVAALL-LDLDQFRAANDVHGHLTGDRVLTEVADRLRVLARPTDVVARIGGDEFVLV 355

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                +       A  + +++  PI +  R + V AS+G A        +  +LK+A+ A
Sbjct: 356 CPD-TDVAAAGRLAEQVIEAVGAPIQVEHRALRVGASVGIAVAPPLDCDAEVLLKHADAA 414

Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK RG    + F  +  R   ++ ++  DL  A+++  L + + P++ L  + +VG 
Sbjct: 415 MYEAKKRGRARSQVFDPALARLAGEQRLLAGDLRAALDDDRLEVHFQPVVDLTSDRMVGF 474

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFIL 797
           EAL +W HP  G +    F+ IAE    +  ++ ++L+R  R   +        P + + 
Sbjct: 475 EALTRWHHPTRGAVPPGTFVPIAEAHGFVADLDHWVLDRACRQTAAALATGELTPGVHVA 534

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++ L +  L + +  ++ ++   P+ + L  +E+ +  +PE +R  L  LR +G+ 
Sbjct: 535 VNLSARSLDEPNLVDTVGEVLDRSGLPPAALVLEATETALPRDPEAARASLAGLRDLGVG 594

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           ++LDDFGT  S LS+L  +P   VK + S +  +    + +AI  +I+ +AK +    IA
Sbjct: 595 ISLDDFGTGYSSLSFLRELPVTGVKIDRSFIRNAVERPEDLAITEAIVRLAKGLGLETIA 654

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + I      + L  +GC   Q    +  +    +
Sbjct: 655 EGIETAEQRELLRDLGCARAQGFWWSPAVPMAEL 688


>gi|89093125|ref|ZP_01166076.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89082775|gb|EAR61996.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 923

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 140/558 (25%), Positives = 262/558 (46%), Gaps = 9/558 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            A     +   ++ +R++ A+   + + +   D         P    I G     + G  
Sbjct: 351 FARDVSDRKHAAERQRKAEAIFNSASEAILLSDAYSKVKMINPAFTKITGYEESEIIGQN 410

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            + L     +D++ +RT+  +      G  Q E   R  + + +     +  + + NG++
Sbjct: 411 ASMLSS-GQHDKEFYRTMYAAL--ETEGLWQGEVHNRKKNGELYVQWQTVVALKDGNGNV 467

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+ I +DITE+K++ E I   A  D LTG+PNR    + L   L  S  +   +  VM
Sbjct: 468 DEYLAIFSDITEKKEAEEEIKYRANYDQLTGLPNRTLLHELLRQELQHSRRESK-KCAVM 526

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K+IND LG AVGD +L +++  + E ++  D++ARL G+ F +IL   +N+  
Sbjct: 527 FLDLDHFKRINDTLGHAVGDLLLQTVSELLQETIRESDVVARLGGDEFIVILSDVDNATD 586

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I+  A  +   +  P+++ + EI    SIG A +        E+L +A++AMY AK  G 
Sbjct: 587 ISTVAEKIVSVLDTPLSIDDHEIRTCTSIGIAVYPDDAFEEGELLSHADMAMYKAKESGR 646

Query: 690 NHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F     +  R    I+ +L  A+EN +L + + PI+ + D+ I+G E+L++W   
Sbjct: 647 GQYRFFNADMAKEIRSSRSIEIELRNAIENEDLAVAFQPIVSMGDKAILGFESLMRWPES 706

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
              N S  + +  AEE  +I+ +   + E+ AR+      + + P ++  IN++S  + +
Sbjct: 707 ANHNTSIEQSIRNAEEFGLIQPLFEVVFEKAAREFSRLPLRNDNPQLYFSINVSSHQIPE 766

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E ++  +     +   + L  +E + + +   +     R R  GI + LDDFGT  
Sbjct: 767 RLSLEWIEERLRYYGLANENLVLELTEGIFLSDSPENLRWFKRARDKGIRIALDDFGTGY 826

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL     D +K + S +    E     ++++S++ ++      +IA+ +  E    
Sbjct: 827 SSLAYLKRFTVDFLKIDRSFIADLDELGADYSLVKSVLALSDAFGLKVIAEGVETEKQAS 886

Query: 926 ELTRMGCDYIQDSHVASP 943
            L  +GC   Q  +   P
Sbjct: 887 ILAELGCKTAQGYYYGKP 904



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 30/232 (12%)

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
            T S+A   +  + ++     +Y   +       L  A   I    +G  + +    +  
Sbjct: 158 QTVSLALFEVILVAIFSAVLGVYLTRQLNS----LTFASNKIRDGHLGFTLPVRGNDELA 213

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            +  +           +  T+ +  +      + +    +R    +     ++W  +   
Sbjct: 214 DVVRSFN--------TMSTTLKKLEIKESQEKEQLEIAHQRMRSLLDNFPFLIWLKNTDG 265

Query: 426 DRVTTTPDIATILGL-ASGSMHGPIR------NWLPYIHINDRDNFRTILDSFVGYRRGR 478
           + ++     A   G      + G         +      ++D     +     V  +   
Sbjct: 266 EFLSVNKAFAEACGKKDPLEVEGLTDFDVWPVDLANDYRLDDLKVITSSQGKVVEEKVES 325

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                     D +  W+     P+   N +++  +G A D++++K + E   
Sbjct: 326 ----------DGERTWIETFKSPVL-HNNEVIGTVGFARDVSDRKHAAERQR 366


>gi|94265549|ref|ZP_01289296.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93453949|gb|EAT04299.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 730

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 136/607 (22%), Positives = 246/607 (40%), Gaps = 44/607 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQS-------LAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
              ++ V       Q I    ER           +   GD V         +T       
Sbjct: 124 IAALERVREKKQLRQNIREGEERLQRSEGFLHSVLETLGDAVVVIGRDLRIITANRGYRQ 183

Query: 437 ILGLASGSMHGPIRNWLPYIH------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
             G     + G     + + +        D      ++ +    R     +  R    + 
Sbjct: 184 QSGRGEEEIIGQHCYRISHGYSRPCWLEEDC--VCAVIQAIKEGRPANSIHIHR--DKEG 239

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-------CNAFQDNLTGIPN 543
              ++     P+ + NG I   +    DITE K+  +            AF D LT +PN
Sbjct: 240 VPLYVETNAYPLRDQNGHIYAAVETIRDITEIKELEQEKRAKEAEIERLAFYDFLTDLPN 299

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+   DRL      S         V+ +D+D +K +ND  G   GD +L    RR+ + +
Sbjct: 300 RRLLQDRLEQAFAASERSGQY-GAVIFLDLDNFKNVNDTRGHRTGDLILQMTARRLRDTV 358

Query: 604 KFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPI---------NLLE 649
           +  D +ARL G+ F I+L +     E    ++   A  +R ++A P          +L  
Sbjct: 359 REDDTVARLGGDEFVILLSNLATQSETAISRVGRVAEKIRLALARPFKLIKPQQGSSLES 418

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707
            E  + AS+G A +   + ++ E+ K A+ AMY AK  G N    F  +      +   +
Sbjct: 419 GEFHLGASLGIALFRGHENSAEELFKYADTAMYRAKEAGRNTARFFDPAMQTALEENESL 478

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL  AV   +  L Y P +      ++G EAL++W H   G +S   F+ ++EE  +I
Sbjct: 479 ERDLRRAVVQEQFELYYQPQVDAA-GRLLGAEALLRWYHSARGPVSPLSFIPLSEENGLI 537

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L+   R + +W     +    + IN++++        + +Q +I+     P +
Sbjct: 538 LPIGRWVLQEACRQLAAWSQSFPVGDFRLAINVSARQFHQPGFVDEVQEIIAAARVEPRQ 597

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           IKL  +E++V+ + + +   + +L+  G+   +DDFGT  S L+ L  +P + +K + + 
Sbjct: 598 IKLELTETLVLTDLDDTIKKMRQLQAAGLGFAMDDFGTGYSSLAKLKQLPLEQLKIDRAF 657

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          AI  +II M + +   I+A+ +     ++ L   GC   Q  +   PL 
Sbjct: 658 VRDLETDPHDAAIAATIIAMGRTLGFEIVAEGVESAEQLQILQSQGCGIFQGYYFTPPLP 717

Query: 946 FNSILKL 952
                +L
Sbjct: 718 AAKFERL 724


>gi|253688264|ref|YP_003017454.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754842|gb|ACT12918.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 722

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 134/583 (22%), Positives = 247/583 (42%), Gaps = 21/583 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +++   L          +   R       S D +   +              +L     
Sbjct: 152 ASLVMDKLEMRRLELARRASQVRFENIANTSPDTILCVNEKGMITFWNTAAEHMLEYTDE 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIR 500
            + G     +  I  +    F   L+  V  R      +  E  V+A       + + + 
Sbjct: 212 EIIGRS---INTIVPD---AFVVQLNHLVADRDSLMKGVTLELNVQAKSGSLVPVELSVS 265

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                + D + Y  I  DITE++++ E +   A  D LTG+ NR      L T L     
Sbjct: 266 --MWEDNDNISYGAILRDITERRRNEERLFLLAHLDPLTGLANRTLLTSNLETALK---- 319

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     +M++D+D +K +ND LG + GD++LV + ++I   ++  D++AR+ G+ F ++
Sbjct: 320 -NEPAVCIMMVDLDGFKDVNDSLGHSSGDNILVHVAKKIKATVRSGDVVARMGGDEFALL 378

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
               N+       A  +   I+  + + + +I ++ASIG   +    +T  ++L +A+LA
Sbjct: 379 FPGLNDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPEYGLTVQDLLTSADLA 438

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G N    F        +      L    A E  E  + Y P ++L   EIVG 
Sbjct: 439 LYQAKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGA 498

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G +S + F+   E     + +  +++E   R    W  + +     I I
Sbjct: 499 EALLRWRHPERGLLSPAAFLTALENGPWAERVGDWIVETACRQAAEWCRE-SDRYFRISI 557

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+ S       L + +  ++++T   PS ++L  +E++++   E     L  LR  GI +
Sbjct: 558 NLFSAQFRTGMLAQKIMDILARTGLQPSSLELEITENIILRYDENMLQPLKALRDAGIGI 617

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             DD+GT  + LS L   P   +K + + +     +    AI+R+I+ + K+    +IA+
Sbjct: 618 AFDDYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAE 677

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +      + L   GC+  Q      P+      +LLK   P+
Sbjct: 678 GVETLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720


>gi|299132359|ref|ZP_07025554.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2]
 gi|298592496|gb|EFI52696.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2]
          Length = 492

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/500 (26%), Positives = 249/500 (49%), Gaps = 21/500 (4%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +   +R  L S +   +  ++    +   D++   +    +PM +       ++   +
Sbjct: 7   PKELKQYRADLLSRLATAKNTIRI---IETTDDREISISN--QPMRDG-----GWVITHD 56

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITEQ+K+   +   A  D LTG+ NR +  +++ +           R  ++ +D+D+++
Sbjct: 57  DITEQRKAEAKLSHMAMHDALTGLFNRAAIREQIESCFRNLR--HGERFAILFLDLDRFR 114

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG   GD++L  +  R+   L+  D +ARL  + F ++    +N    +  A  +
Sbjct: 115 SVNDTLGHEYGDELLRQVGDRLRGRLQKGDTVARLGDDEFVVLQCEADNPTNPSKLASKL 174

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I+ P  L + +  V AS+G A  ++    + E+LK A +A++ AK  GGN    F  
Sbjct: 175 VDCISAPFELGDHQAIVGASVGIAMASTDADGTDELLKKANIALHRAKEDGGNTCRFFEA 234

Query: 698 SSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 R    I+ DL  A+ N E  L Y PI+ +  E+I   EAL++W HPK G IS +
Sbjct: 235 EMDDMMRSRRSIEMDLRSALSNGEFELYYQPIVSIRSEQICAFEALLRWKHPKRGVISPA 294

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAEE  +I  I  ++L +   +   W ++     I + +N++      ++L + + 
Sbjct: 295 EFIPIAEETGLIIPIGEWVLRKACIEAAKWPNE-----IRVAVNLSPVQFKTSDLHQVVF 349

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++++     R++L  +ES ++   ER+  +L +LR++G+ +++DDFGT  S LSYL  
Sbjct: 350 GALTQSDLKSKRLELEITESALLLENERTLSILHQLRELGVRISMDDFGTGYSSLSYLRS 409

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      E  +AI+R++  +  ++  TI  + +  +I++  L + GC 
Sbjct: 410 FPFDKIKIDQSFVRDLSHNEDSMAIIRAVTTLGNSLGMTITGEGVETQIELDYLRQEGCT 469

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q    + P+    I ++L
Sbjct: 470 EAQGYFFSKPVPPGEISRIL 489


>gi|70729284|ref|YP_259021.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68343583|gb|AAY91189.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 572

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 134/563 (23%), Positives = 261/563 (46%), Gaps = 17/563 (3%)

Query: 404 GERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDR 461
            E+   AV  +   ++ + D+             + G +   + G     L   +H    
Sbjct: 2   DEKYRRAVDAA--AIFSETDLGGSITYVNDLFCQVSGYSREELIGANHRMLSSGLHP--- 56

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIANDIT 520
             F   L   +   R   + E   RA D   +W+   + P+ +  +G ++RY+ I  D++
Sbjct: 57  PEFFAELWQTITQGRV-WKGEICNRAKDGSLYWVDSTMVPLVDQRSGQVVRYVSIRFDVS 115

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++ L  +      D LTG+PNR    D L   LD S    ++   V ++D+D +K +N
Sbjct: 116 EKRQLLHSLQWRVGHDVLTGLPNRAFLSDLLHQALDFS-RAQDIPLAVCMLDLDGFKAVN 174

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +LV +  R+  +++  D++ARL+G+ F +IL    + L++      +  +
Sbjct: 175 DGYGHACGDLLLVEVAARLRSIIRGEDVVARLAGDEFVLILRYVRDMLELRAALQRVLAT 234

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           I+ P ++  ++I V ASIG   + +    +  +L++A+ AMY AK  G N    F     
Sbjct: 235 ISQPYSIQGKDINVFASIGVTLYPTDNHDADTLLRHADQAMYVAKQSGRNRFHLFDVLRD 294

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                     E +  A+   EL L + P + +   E+VG EA+++W HP+ G + + EF+
Sbjct: 295 REVMVTYQTVEQVRQALLAGELRLYFQPKVNMRTGEVVGFEAMLRWQHPQRGMLGAQEFL 354

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              EE  +I  I  ++++++   +  W+         + +N+A++     +  E ++ ++
Sbjct: 355 QQVEETDLIVEIGEWVMDQVMTRLQGWQQAGLG--WPVSLNVAARHFQRPDFVERLKDML 412

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +     P+ + L   ESV + N +R    L   +  G+  +L DFGT  S LSYL  + 
Sbjct: 413 DRYPDVLPALLDLEIVESVAIDNIQRVSDCLDACQGFGVQFSLGDFGTGHSSLSYLKRLR 472

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             T+K +   +          A++++++ +A+     ++A+ +      + L  +GCD  
Sbjct: 473 TQTIKIDRLFVRDMLHDADDQALIQALVGLAQAFGRRVVAEGLESLAHGERLMALGCDVA 532

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q   +A P+   ++L  ++   P
Sbjct: 533 QGDFIAPPMPAEAVLDWVRSFEP 555


>gi|188583682|ref|YP_001927127.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179347180|gb|ACB82592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 833

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/768 (19%), Positives = 279/768 (36%), Gaps = 50/768 (6%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWNR 277
                 W +     + F   ++    L      I  A +   ++  +        L    
Sbjct: 56  VFGCSVWSLHFVAMLAFRPSAQAAYGLLPTAASIGIAVTGALIALLIWCRADHHPLKLAA 115

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
               +                 +       A +        +L  T       + G  R 
Sbjct: 116 AGMVMAAAIAGMHYAGVGAMAANSLLLFDGAYVHASLGLCAILAVTALARAGDLTGLGRR 175

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDII--------QPALVGGLVLIVILIGFTVIQH 389
           + +     L         M          +           L   + L+ +++    +  
Sbjct: 176 IEVSLWLALAICGLHFTGMTALTVAPAAPLEEGGAVLGSTQLGLAVGLVSLVVLAAGLAA 235

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           +L   +  +    +  R  L    + +++         V        +       + G  
Sbjct: 236 LLMQRHLMRRRMDELSRMRLLGNLAHEVLL-IHRDGRVVEINQAGLRLFETTLQEIVGRP 294

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L      D      +L             EF +R A      + +  R +    G  
Sbjct: 295 --LLDLFADADAP---ALLRRSRCRPEELRPEEFEIRTAAGLAVPVELSCRAI-EYLGRP 348

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +    D++++++    I   A  D LT +PNR    +RL+  L+ +A +      ++
Sbjct: 349 ATAVA-LRDLSQRRRDEARIRHLALHDALTDLPNRTLLEERLSLALETAAEN-GASVALV 406

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K +ND  G A GD +LV   +R+   L+  D LAR+ G+ F I+L       +
Sbjct: 407 YLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLAQ 466

Query: 630 IADFAIAMRKSIAMPINLLER----------------------EITVTASIGFASWTSSK 667
           IA+ A  +  ++  P +L  +                       I + AS G A + S  
Sbjct: 467 IAETAARLVAALGRPFHLEGQNEGEGKSEGKGEGTSEGKSEGLRIEIGASAGIAVYPSDG 526

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            T+  + + A+ A+Y  K  G   V  F   +      R  I+ +L  A+   EL L Y 
Sbjct: 527 STAETLKRAADTALYRVKDEGRGTVRFFEAAMDEQLQARRRIEHELSGAIPRGELQLYYQ 586

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+     EI   EALI+W HP+ G +  ++F+ +AE+   I  I  ++L+       +W
Sbjct: 587 PIVNGRTGEIETFEALIRWHHPERGCVPPADFIPLAEQTDQIGRIGAWVLDTACAAAAAW 646

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                  P  + +N++ K         G+ A++ +    P R+ L  +E V + +   + 
Sbjct: 647 P-----HPWRVSVNVSPKQFRQPGFAAGVAAVLGRYGLPPGRLVLEITEGVFIQDATMAV 701

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSII 903
            +L  LR +G+ L LDDFGT  S LSYL    FD +K + S +   G     + I+R+I 
Sbjct: 702 EVLTALRTLGVRLALDDFGTGYSSLSYLQRFKFDKIKVDQSFVRRLGRHADTLTIVRAIT 761

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  N+   +  + +  +  +  L  +GCD +Q    A P     + +
Sbjct: 762 HLGHNLGLQVTVEGVETQEQLAMLRELGCDQMQGYLFARPAPMTELSQ 809


>gi|258405277|ref|YP_003198019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
 gi|257797504|gb|ACV68441.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfohalobium retbaense DSM 5692]
          Length = 936

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/576 (25%), Positives = 265/576 (46%), Gaps = 11/576 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440
           +    ++ + +    ++ +     R       + + ++        +      A +LG  
Sbjct: 324 VLIGTVEDITSEMETAKNLEKSEARYRNLFANALEGMYLIGTDDSVICVNQAFADLLGYA 383

Query: 441 ASGSMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +        R      I+            + +  +   +  E +VR  + +  W+    
Sbjct: 384 SPKDFETSNRGKKFSRIYET--PTVNKNKFNALWTKGKIMHLETQVRRKNGELIWISENT 441

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           + + + + +IL   G   DITE+KKS E +L  A  D+ T +PNR  F++++   L    
Sbjct: 442 KIVKDDHKNILYLQGTIIDITERKKSEERLLHQALYDHRTNLPNRSYFVEKIEKGLKRVG 501

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +      ++  D+D +  IND  G  VGD +L+ ++ RI   +   D LAR S + F +
Sbjct: 502 QEPGFSFGLLYFDLDGFGTINDSFGYFVGDRLLLEVSHRIRTAIDETDTLARFSSDEFCV 561

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +  +  ++  I D A  +R+ +     L  +EIT+T SIG   +  +   + +ML++ EL
Sbjct: 562 MSENRTSAQ-IQDLAENIRQKLEQVFFLDGQEITLTTSIGILEYNVTYTRAEDMLRDIEL 620

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AM  AK RG N    F    ++       +++DL  A++  EL L Y PII+L   E+  
Sbjct: 621 AMLQAKKRGKNRWVIFSSDMYQRKSERTLMEKDLRRALDREELVLNYQPIIKLDSGELNS 680

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LEALI+W HP+ G IS  +F+ +AE+  +I+ I  ++L+   R +  WR+      + + 
Sbjct: 681 LEALIRWKHPEHGFISPGKFIPLAEQTGLIEPIGKWVLKEACRQVKIWRES--NKSLIMN 738

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++SK L    L   +  ++      P+ + L  +ES  M   E +   L RL+ +GI 
Sbjct: 739 VNLSSKQLEKAGLERNIYQILQDINLDPACLNLEVTESAAMSKLESNVRTLKRLKFMGIR 798

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L++L   P D +K + S +      +    I+ +I+ +A  ++  ++A
Sbjct: 799 LSIDDFGTGYSSLAHLQRFPLDELKIDRSFIISLKAGKACHRIVHAIVELALGLKLKMVA 858

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + I     +  +    C Y Q    +  +  N I K
Sbjct: 859 EGIETNSQLNMVKTFNCHYGQGFLFSKAMAANEIEK 894



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 13/192 (6%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +    +      GLV  +++      +        ++  + +  R   A+  S   V + 
Sbjct: 179 VQTTFVPMRNSSGLVDKILI----TFEDSTERKRLNELTYQEKARLRAALANSRQGVCEI 234

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D   + +           +   +     +++   IH +DR     +  +      G+L+ 
Sbjct: 235 DPEANAIYLDLHNVWDHAVKPSAKTKYRKSFDNLIHPDDRQGLLELGKNHTPQADGQLRS 294

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTG 540
            FR ++   ++ W+  R + + + +      IG   DIT E + +       A       
Sbjct: 295 CFRFQSQSKEWRWLQFRGKTLPHYSSGYPVLIGTVEDITSEMETAKNLEKSEARY----- 349

Query: 541 IPNRQSFLDRLT 552
              R  F + L 
Sbjct: 350 ---RNLFANALE 358


>gi|160897131|ref|YP_001562713.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160362715|gb|ABX34328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 585

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 256/574 (44%), Gaps = 22/574 (3%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               + +  D +R  +A+  + D +   D     +   P +  + G  +  + G     L
Sbjct: 14  AAPGEALDEDLKR--VAMEAAPDGILLVDRSGRILLANPAMQAMSGYGAAELLGHSLQML 71

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +    +      L S+      R      +  +   D +   + I +    + +G   
Sbjct: 72  --LPAEAQAAHGPQLQSYFAQPARRPMGQGRDLWLLRKDGKRLSVDIALGHSPHGSGV-- 127

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-----DNLR 565
             +    D+++ ++    +  +A  D LTG+ NR  F  ++   +  +            
Sbjct: 128 -AVAFVRDLSQLRQMEACMHYHATHDTLTGLLNRWQFGLQVEQAISQAQAQSESGAGPAS 186

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++++D+D +K IND  G  VGD VL  + RR+   L     LAR+ G+ F  +L   N
Sbjct: 187 FALLLLDLDNFKAINDGYGHDVGDQVLKEVARRLQAALGGSATLARMGGDEFTALLQPCN 246

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               +     A+   +  P  +    +   AS+G A +      ++ +++ A++AMY AK
Sbjct: 247 EPD-LRQRIDALLHELCRPCTIGHYALNFGASVGAAFYPQDAGDAATLMRYADMAMYDAK 305

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            R  +    +  +     +++V++ E L  A++   L L + P ++++  ++ G+EAL++
Sbjct: 306 QRSRSSYARYASAMGEAMAEKVLLHERLKRALDRGLLSLHFQPQVQVLGGQVQGVEALLR 365

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+  + G +S   F+ +AE   +I A+  ++++   R    W       P+ + +N++++
Sbjct: 366 WNDEQMGWVSPERFVPVAESTGLILALGEWVIDAACRQAGDWLRAG--MPLRVAVNLSAQ 423

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   +L + + A +++    P  ++L  +ES  M +P ++R LLG L   G+ + LDDF
Sbjct: 424 QLRQADLQQRLMASLARHGVPPHLLELEVTESAAMTDPLQARELLGSLLAAGVCVVLDDF 483

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L++L  +P   VK + + +     +     I++++I +A+ +   ++A+ +   
Sbjct: 484 GTGYSSLAHLRDLPVSRVKIDRTFIGPMLDSPADAKIVKAVIALARTLGLQVVAEGVETA 543

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ L  + CD  Q    A  +    I  LL+ 
Sbjct: 544 EQLRLLRILDCDAYQGWLFARAMPAEQIPPLLQR 577


>gi|71278464|ref|YP_271624.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71144204|gb|AAZ24677.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 1534

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 148/562 (26%), Positives = 270/562 (48%), Gaps = 15/562 (2%)

Query: 399  GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               ++ ER      A   + D V+  D    R+T    +  +             + L  
Sbjct: 968  ESRANEERAQYYGDAFQQTQDWVFIIDEKISRITANQSMRAVFDWPEEEF--DFSDKLLG 1025

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +    R  +R ++ S         + E  +  A+   + +II +    +S  + L Y+ +
Sbjct: 1026 VSQKRRSFYRKLMLSLKEGE--HWRGEELIVTANKDEYHVIINVTVGFSSVTNALHYLFV 1083

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              DI+ QK +   +   A  D+LTG+PNR   L+R+   +D S   D     V  ID+D+
Sbjct: 1084 LTDISAQKSAESELRLLANYDHLTGLPNRTLLLERIKHAIDFSNRRD-TSIAVFFIDLDR 1142

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K++ND LG   GD +L  +T R+   L+  D +AR+ G+ F ++L S  N  ++   A 
Sbjct: 1143 FKQVNDSLGHDFGDLLLREITNRLQSTLRIDDTVARIGGDEFVVLLESFANENQLGRIAE 1202

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +  +I   ++L    ++V AS+G A + +  I S E+L++A++AMYHAK  G ++ + +
Sbjct: 1203 KVIDTIGQSVDLDGNLVSVGASVGIALYPNDGINSDELLRHADVAMYHAKQAGKSNFKFY 1262

Query: 696  RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                       +  +  L LAV+N+E    Y PII     + VG+E L++W     G + 
Sbjct: 1263 TAQMNVEAMERLSQESALKLAVKNNEFINHYQPIINAYTGKAVGVEMLMRWQTST-GLVP 1321

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             S+F+ ++EEL +I  +    LER+ +D+  W      P  ++ IN++ +  ++ ++   
Sbjct: 1322 PSDFIPLSEELNLIITMTEMALERVCKDLKEWH--TIRPEFYVSINLSVQHFVEADIVSF 1379

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  L+++     + +++  +ES ++  PE +   + +L  +G++L LDDFGT  S LSYL
Sbjct: 1380 ISELLARYQLPAAILRVEVTESSLILQPENAITTMRKLSSLGLTLALDDFGTGFSSLSYL 1439

Query: 874  GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              +P D +K + S +   G  E   AI+ + + +AK +    IA+ +        L    
Sbjct: 1440 KKLPLDIIKIDRSFVAGIGINEADEAIVDTTLVLAKRLNMHCIAEGVETVEQFNYLVAKQ 1499

Query: 932  CDYIQDSHVASPLGFNSILKLL 953
            C Y+Q    + P     I+K L
Sbjct: 1500 CHYLQGYLYSKPSSAEKIMKNL 1521



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 6/177 (3%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF--SQGIFSDGERQSLAVLGSGDI 417
                      L+  + L+++++ +   +           + +     R  LA+ GS   
Sbjct: 803 GFAPWRSPLAILLYSIALMLMMVTWYRYRKTQQQLLLDVHEQVKYRENRLQLALTGSNSE 862

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YR 475
           VWDW    D +     I+  LG    ++   +   +  IH  D DNF      F+     
Sbjct: 863 VWDWQADEDLIF-GKRISLDLGYREKALFYSLEEHVALIHPEDHDNFIHCWQLFISSANL 921

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILC 531
           +      +R++ +D Q+ W     + +  ++N   +R  G   +ITE + + E    
Sbjct: 922 KDNFSCTYRLKTSDGQWFWYKDLGKIVAVDANNHPVRVTGSYTNITESRANEERAQY 978


>gi|95928959|ref|ZP_01311704.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134860|gb|EAT16514.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 777

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 163/744 (21%), Positives = 323/744 (43%), Gaps = 33/744 (4%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
           W++L + ++    +   +     +L              L ++       +R +    +I
Sbjct: 33  WLLLIFAAVGSALIIAAIPF-GADLNATHVAVLCLGLIVLTLYNCGLHLLSRTNRHPLWI 91

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
               +    +L     ++     S        I L  T+ +       + R V++I +  
Sbjct: 92  DRGQLTADTVLVSTLIFFSGAEHSWLWPLYVVIALEATFLL------RHPREVVVISSLG 145

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI----------GFTVIQHVL--AT 393
                 I    +       ++     +G    I  ++            T+I      A 
Sbjct: 146 AALFAAILCAGSYGNVPQFNLHLLDNIGPQHTIDRVLLWLWACFLGCSATLIGSSFNSAL 205

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ   S   +    +  + D+++ +D               L +    + GP  +  
Sbjct: 206 TNESQETLSRENQLQRFMESAQDLIFAFDADNRIHYLNGAARQRLDV---DISGPALHVD 262

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             +  ++   + +   + +       +   FR+R+A      +  RI   ++  G IL +
Sbjct: 263 QILDESELPRWNS--KTCLLTVGTPFEPTSFRLRSAAGHELPVDCRISTAADG-GTILHW 319

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  D++ Q ++ + +   +  D LTG+ NRQ F ++ T  + L+      +  V +I 
Sbjct: 320 V-VCRDLSTQLENEKRLYNLSNFDQLTGLTNRQEFSEQATNAMRLTKRLQQ-QMAVALIS 377

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID  K IN+ L   VGD +L   + R+ + ++  D++ RLSGN+F +   + ++   I  
Sbjct: 378 IDHLKVINETLTSEVGDSLLREFSVRLSQGVRETDLVGRLSGNQFAVAFTNIDDIQSIEQ 437

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +RK ++ P+ + ++E+ VT+S G + +    ++   +LK A  A Y+ +  GGN  
Sbjct: 438 VMTKLRKKLSQPMTIGDQEMFVTSSAGLSIYPGDALSVEALLKKANSARYYVRAHGGNKH 497

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +        +  ++    L  A+   EL L Y P + L + E   +E L++W HP  G
Sbjct: 498 QFYAPEMDEDIKNRLEMINGLHNALVRDELQLSYQPKVNLAEGEFHSVEVLLRWSHPTLG 557

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S S+F+ +AEE  MI  + L++L +    + +W+ Q   PPI + +N++   L  ++ 
Sbjct: 558 QVSPSDFIPMAEESGMIGELTLWVLRQACLQVHAWQKQGL-PPIRVAVNVSGHQLQSSDF 616

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+++T   P  +++  +ESV+M +P  +   L +LRK+GI L +DDFGT  S L
Sbjct: 617 ITALTDLLNETGLDPQWLEIEITESVLMQSPTAAIATLNKLRKLGIHLAIDDFGTGYSSL 676

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL   P  ++K + S +     +E+   I  SII M K++  T+IA+ +     +  L 
Sbjct: 677 AYLKRFPVHSLKIDRSFIKDIEQSERYATITSSIIEMGKSLHLTVIAEGVETLGQMAFLK 736

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CD IQ    + P+  + I++L
Sbjct: 737 EQNCDEIQGFLYSMPVNADEIVRL 760


>gi|288555262|ref|YP_003427197.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus pseudofirmus OF4]
 gi|288546422|gb|ADC50305.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus pseudofirmus OF4]
          Length = 656

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 246/560 (43%), Gaps = 17/560 (3%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E+    V    +     D     ++   + A + G     +     +    I   D   
Sbjct: 105 EEQLEQLVNTRFEGTLIHD-QGKIISVDEESAVLFGYTRKELIH--LSVFELISPEDWIK 161

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +  + + +        +E R    D     + ++ RP       +        +ITE+K
Sbjct: 162 AQDAIVNGLIEP-----FELRALHKDGTTIHIEVQGRPYPYKKKKVRLV--SIRNITERK 214

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E I   A+ D +TG+ NR++F +R+   L+   +D++    V  I +++ K +ND +
Sbjct: 215 KQEEQITYLAYHDEVTGLLNRRAFQERMKEQLNALKSDES--VVVATIGLNRLKTVNDAM 272

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI  G+ ++  ++  + E       LARL  + F +  I  N    +  F   + +    
Sbjct: 273 GIEAGNRLVKEVSHLLNEKCLPRIHLARLGSDEFILSFIESNPQDAVIPFINNILECFNE 332

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E    V  S+G +  +++ I  +E+++ AE+A++  K      ++ +        
Sbjct: 333 PLQLDEFYFHVNLSVGLSISSNALIDVNELIRQAEVALHTIKDSTHGSIQFYEKEMSTGS 392

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +  + +L  A+  +E  LV+HP   L   ++ G+EAL++W     G +S  EF+ +A
Sbjct: 393 IREMIIENELRHAIAKNEFTLVFHPQACLESGDLSGVEALLRWKSSALGMVSPFEFIEVA 452

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++E+     +    +    P+ + +N++    +   L E +   + + 
Sbjct: 453 EKTGLIIPIGKWVIEQACHYALQLERELGR-PVKMAVNLSPVQFVQPNLVEIITNALEEA 511

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             + S ++L  +ESV M +       L  LR++G+ +++DDFGT  S L YL   P D +
Sbjct: 512 GLNASSLELEITESVAMEDEAHVMEKLTALRELGVHVSIDDFGTGYSSLQYLSQYPIDKL 571

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +   T     I++SI+ M  N+   +IA+ +     +  L  + CD +Q     
Sbjct: 572 KIDKSFLRVQTNTNQTIIKSIVSMGHNMGMKVIAEGVESYDHVALLRSLDCDEMQGFVWT 631

Query: 942 SPLGFNSILKLLKE--RFPL 959
            PL F  ++  L    RFPL
Sbjct: 632 KPLPFTELITKLTSEGRFPL 651


>gi|56479052|ref|YP_160641.1| complex sensory protein [Aromatoleum aromaticum EbN1]
 gi|56315095|emb|CAI09740.1| Complex sensory protein with histidine kinase domain [Aromatoleum
            aromaticum EbN1]
          Length = 1246

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 153/577 (26%), Positives = 280/577 (48%), Gaps = 11/577 (1%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGS--GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             L      +   ++ + ++ A+  S  G +++ +      V+  P +  +LG+    +  
Sbjct: 537  ALRRRTAQEKAEAEVQLRNRAIEASHNGLVIYRYAPPAGIVSANPALLRLLGMDEEQLIA 596

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                 L     +  +N    LD  V  R+   +    +  A     W+   +  + +   
Sbjct: 597  MDLPTLARQGFD--ENGWEQLDGLVTARQAG-EVPLSLVRASGDVCWLDTSVTLVGDDVA 653

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             I   +    D+TE+ +  E +   A  D+LTG+PNR    DRL   L L+A + +LR  
Sbjct: 654  GIDHAVIEFRDVTERHRYQEQLAYQANHDSLTGLPNRNLLGDRLQQSLALAACNSSLRF- 712

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            V+ +DID+++ ++D  G  + +  LV L++R+        I+AR++ + F +I     + 
Sbjct: 713  VLWVDIDRFQVVHDSFGNEIANATLVVLSQRLAGAATGCSIVARVASDEFVLITEELPSQ 772

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +   A  +  ++  PI+    E+ +T SIG A+   + +    +L+NA +A++ AK  
Sbjct: 773  QAVVSLATRLLDALRAPISAGGEELWLTGSIGVAAMGGADLDVDTLLRNANVALFRAKEM 832

Query: 688  GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G +    +    +   + R+ ++  L  A+E  EL+L Y P + L+  E+VG EAL +W 
Sbjct: 833  GRDTFCFYETGLNVRTAPRLRLELALRRAIEQDELFLAYQPKVDLLTGEVVGSEALCRWR 892

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G +S  EF+ IAEE  +I  I  ++LE        W D        + +N++    
Sbjct: 893  HPELGLVSPGEFIPIAEESGLILPIGRWVLETACAQARRWIDDGIDYR-RVAVNVSPLQF 951

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++L   + AL+S+    P+ + L  +ES +MGNP R+ +++ +L+ IG+ L +DDFGT
Sbjct: 952  FRDDLVADVAALLSRYRLEPASLMLEITESAIMGNPARAIVMMQQLKAIGVKLAIDDFGT 1011

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S LS L   P D +K + + +T  T      AI  SII +A ++   +IA+ +  E  
Sbjct: 1012 GYSSLSALKRFPIDYLKIDRAFVTDITTNASDAAIAVSIISLAHSLNLRVIAEGVETEGQ 1071

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            +  L   GCD +Q  H + P+   ++  L+++R  LV
Sbjct: 1072 VLYLRGRGCDEMQGYHFSPPVAPEALATLIRDRQQLV 1108


>gi|159036957|ref|YP_001536210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Salinispora arenicola CNS-205]
 gi|157915792|gb|ABV97219.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Salinispora arenicola CNS-205]
          Length = 720

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 138/577 (23%), Positives = 255/577 (44%), Gaps = 16/577 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     Q +     R      G+   +    +    +      A +LG +   +     N
Sbjct: 146 ARDEVEQALRDSEARFRAVFSGAAIGIGIGLVDGQIIDVNQAFADMLGYSIEEL--RQIN 203

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H +D      +    V  +    + E R    D    W  + +  + + +G    
Sbjct: 204 VASLFHPDDAAGMWELYQELVEGKHESARLEKRYYRKDGSAVWTDLAVSLVRHDDGRPRF 263

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  DITE+ +  + +   A  D LTG+PNR  F + L  I D +  D   R  V  +
Sbjct: 264 TVAVVEDITERYELQQRLRFEALHDPLTGLPNRTLFFETLGVIFDNA--DAGRRIGVCFL 321

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKI 630
           D+D +K +ND LG  +GD +LV +  R+ + +     ++AR+ G+ F I++    +   +
Sbjct: 322 DLDGFKAVNDSLGHDLGDQLLVVIADRLADCVAGFGHLVARMGGDEFVILVDEGESLDDV 381

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A A   +++ PI + + ++ V+ASIG     +  I  SE++K A+  +Y AK  G  
Sbjct: 382 VGVADAALAAVSAPIRIGDHQLVVSASIGIVECPADTIDPSELMKAADTTLYWAKAEGRG 441

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +       +     +   L  A+E  E  L Y PI+ L D  +V +EAL++W HP+
Sbjct: 442 RWAVWDRERSAQEIARSALAAGLPAALERGEFVLHYQPIVSLRDGSMVAVEALVRWQHPE 501

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S   F+ +AEE  +I  +  ++L +  RD  +WR +     + + +N+A++ + D 
Sbjct: 502 LGLLSPVRFIGLAEETGLIVQLGAWVLRQACRDAGAWRREFPDTRLVVSVNLAARQVDDP 561

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            + + +   ++ +      ++L  +ES VMG        L RL  +G+ L +DDFGT  S
Sbjct: 562 IIVDTVADTLADSGLPADLLQLELTESAVMGTAGEPLRSLHRLAGLGVRLAIDDFGTGYS 621

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTE---------KRIAILRSIIPMAKNIETTIIAKDIY 919
            L+YL  +P   +K  G  + G  E         +   I+ +++ +A+ +E ++ A+ + 
Sbjct: 622 NLAYLRRLPIRCLKLAGPFVEGLREGTPEMTTCHRDEQIVDALVRLARALELSVTAEAVE 681

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  + L  + CD  Q      P     I   L+ +
Sbjct: 682 TGVQAERLRALRCDTGQGYWFGVPGPVGEITARLRRQ 718


>gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 598

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 133/439 (30%), Positives = 229/439 (52%), Gaps = 5/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   AF+D LT +PNR  FL+RL   +D+     N +  V+++D D++K IN
Sbjct: 155 ELEIANSKLRDMAFRDELTNLPNRALFLERLADGIDIKQQYPNYQFVVLLLDCDRFKMIN 214

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG +VGD +LV++++R+  LLK  D LARL G+ F I++    +  +    A  +  S
Sbjct: 215 ESLGHSVGDQLLVAISKRLKSLLKPEDTLARLGGDEFAIMVNKIEDMAEAKTIAQKVIDS 274

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            + P  L  +E+ +  SIG +           +L++A+ AMY AK  G      F  S  
Sbjct: 275 FSHPFVLPNQEVFINVSIGISLSHLDYQKPEHILRDADTAMYRAKDLGKGQYHIFDPSMH 334

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +++ ++ DL  A+ N+E  + Y PII L   +I G EALI+W HP    I    F+
Sbjct: 335 HHVSEKLQLENDLRRAITNNEFLVYYQPIIHLKTGKIAGFEALIRWQHPTKKLIPPVLFI 394

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQAL 817
            IAEE  +I AI   +L+       SW++ +     +FI +N++++   + EL + +Q +
Sbjct: 395 PIAEETGLINAIGYLVLKSACEQFRSWQENKLINDSMFISVNVSARQFANMELSQQIQQI 454

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T   P  +KL  +ES +M NP+ +  +L   +   + L++DDFGT  S LSYL    
Sbjct: 455 LEATKLDPHCLKLEITESAIMDNPKTAVAILEGFKSQNVRLSIDDFGTGYSSLSYLHNFQ 514

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +        +  ++  I+ +AK ++  +IA+ +     +  L  + C++ 
Sbjct: 515 VDTLKIDKSFVQRMDNNGSSCGLVPVIVNIAKTMKMGVIAEGVETPEQLSLLRSLECEFA 574

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + PL  +S+L L+ 
Sbjct: 575 QGYLFSPPLPESSLLDLIS 593


>gi|332305295|ref|YP_004433146.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172624|gb|AEE21878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 684

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 135/575 (23%), Positives = 262/575 (45%), Gaps = 19/575 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHG 447
           ++                       + D+    D     +     D           +  
Sbjct: 122 NLAEVRQAQAQAQFKDNMLEAVFEATPDVFLLIDENGTIIDYHAGDNEDFYVFPKDCIGQ 181

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            + +              T+ ++    + G   +E+ V  A     +   R+  ++    
Sbjct: 182 SVSSLF----PEPVARKFTVHNAIAFTKGGISTFEYEVELASGT-RYFEARLSHLNAYK- 235

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
              + + I  DITEQ K+ E I  +A+ D+LT +PNR   LDRL+ +L  +      +  
Sbjct: 236 ---QVVVIIRDITEQHKAAESIRQHAYFDSLTSLPNRFLSLDRLSQMLKEAQRS-KEKVA 291

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D +KK+ND LG  VGD +L  +  ++   L+  D + RL G+ F ++L S    
Sbjct: 292 LLFLDLDDFKKVNDSLGHEVGDKLLKEVANKLTLALRKADTVGRLGGDEFIVLLRSLTGD 351

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               D A  + +    P  +  +E+ +T SIG  ++T +  ++S++L++A+ AMY +K  
Sbjct: 352 SDAIDIAENLLEIFREPFEIDGKELVLTLSIGIVTYTKNGDSASDLLRHADAAMYQSKLS 411

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F           +  +E L  A++  E  + Y P   +  ++++G EAL++W 
Sbjct: 412 GRNTYSFFTKEMSDVMLRRLEIEEQLNHALQREEFEVYYQPKFDVKSKKMIGAEALLRWR 471

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +P  GN++  EF+ IAE   MI  I  +++++    + +W    +     I +N++ +  
Sbjct: 472 NPLLGNVTPDEFIPIAEHTGMIVPIGKYVVKQSLAFLNNWN-TTHQQTYTIAVNLSPRQF 530

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D  L   ++  +     +P  ++   +E V+M         L  L ++G+ L++DDFGT
Sbjct: 531 RDKTLIGFIEQTLHDENIAPKSLEFEITEGVLMAGNSYIDDALQNLHQLGVKLSMDDFGT 590

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL    FD +K + S ++G TEK+    ++++ I MA +++ +++A+ +     
Sbjct: 591 GYSSLSYLRQYSFDVLKIDRSFISGITEKKEDLDLVKATIAMAHSLDLSVVAEGVETHEQ 650

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  L  +GCD +Q  + + P+   + L     R+P
Sbjct: 651 LFLLDGLGCDLVQGYYFSKPIPAENALDF---RYP 682



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 4/112 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479
           +D  R+ +        + G       G        I  +  R+        ++       
Sbjct: 27  YDEERNVIYWNLGSELLYGYTEEEALGQKLE--DLIFPDFMREPVIAAHSDWINKGIKIP 84

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             E  +R  +     +       +N +     Y  I  ++ E +++      
Sbjct: 85  AEELTLRHKNGSDVSVFSSHVLFTNEHNKHEMY-CIDINLAEVRQAQAQAQF 135


>gi|17228670|ref|NP_485218.1| hypothetical protein all1175 [Nostoc sp. PCC 7120]
 gi|17130522|dbj|BAB73132.1| all1175 [Nostoc sp. PCC 7120]
          Length = 880

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 233/438 (53%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++  E I   A  D LTG+PNR  F + L   L  ++        VM +D+D++K IN
Sbjct: 437 QRQQVEEKIRYQALHDLLTGLPNRLLFNELLAKALANASRSQE-SLAVMFLDLDRFKVIN 495

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L S+ +R+ + L+  D ++R  G+ F I+L   +   ++   A  + K+
Sbjct: 496 DTLGHTLGDRLLQSVAQRLRDCLRSGDTVSRWGGDEFTILLPHISYIEEVTQAACRILKA 555

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +    +L   E+ V+AS+G A        +  ++K+A+ A+YHAK  G N+ + +    S
Sbjct: 556 LEEVFHLDGHELYVSASLGIALLDHHSPDAEALIKHADAALYHAKDEGRNNYQFYTTSLS 615

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + + +++ L  A+E  EL + Y P + ++  +I G+EAL++W HP+ G ++ S F+
Sbjct: 616 GKTPELLTLEKSLRYALEKQELKVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFI 675

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  ++L        +W++    PP+ + +N++ K      L E + A++
Sbjct: 676 PIAEETGLIIPIGEWVLRTACMQNRAWQEAGL-PPVQMAVNLSPKQFRQPTLLELVSAIL 734

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T  +P  ++L  +ES  + + + +R +L  L+++G+ + +DDFGT  S LS L  +P 
Sbjct: 735 AETGLAPEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPL 794

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +GS +   T       I+++I+ + +++   + A+ +  + ++  L  + C  +Q
Sbjct: 795 HNLKIDGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQ 854

Query: 937 DSHVASPLGFNSILKLLK 954
                 PL      ++L+
Sbjct: 855 GFLFHKPLSAEKATEILQ 872


>gi|254785359|ref|YP_003072788.1| GGDEF domain-containing protein [Teredinibacter turnerae T7901]
 gi|237685923|gb|ACR13187.1| GGDEF domain protein [Teredinibacter turnerae T7901]
          Length = 811

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 130/592 (21%), Positives = 267/592 (45%), Gaps = 13/592 (2%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           LV     +   V   +         +    E     +      V   +     +     +
Sbjct: 218 LVNSGNQLLDAVDLALAKRRAVEVVLRKSEEHVRQIIDSLPVWVGARNKDGHYIFANKAL 277

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           A  L  +  +M G   +      + D      + +  +  R     +E +   A  + H 
Sbjct: 278 ADFLNTSPEAMRGSHISDFASYFLTDPAEVIALDNEVISTRLSAQIWEEKWLNAGGEEHS 337

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           M   + PM   +  +   +   +DITE KK+   +   A+ D LT +PNR   ++RL   
Sbjct: 338 MHTHVMPMEFYDEVVALVVS--SDITELKKAQAQMEHMAYHDALTDLPNRSYLVERLEEE 395

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  S    N    ++ ID+D++K IND LG   GD VL  + +R+  +    D++ RL G
Sbjct: 396 IRKSDR-QNFFGALLFIDLDQFKYINDSLGHPAGDGVLKHVAQRLMAIASENDVVVRLGG 454

Query: 615 NRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           + F ++L +         LK  + A  +R  ++ P    + E+ VT S+G   +   +  
Sbjct: 455 DEFVVVLTNLGEDISGAILKAEEIAERIRSHVSEPHYYHDLELHVTCSVGIVIYPDEEAG 514

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
             E+L+ A+ AMY  K +G + ++ F   ++    + ++++ DL  A+E     L + P 
Sbjct: 515 VHELLRFADTAMYQVKEQGRDAIQFFNKYMADKARNVLVMEGDLHRALEMEAFSLQFQPR 574

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + ++  EIVG EAL++W+HP+ G +S + F+ + E   +I  + ++++ER  + +  W+ 
Sbjct: 575 VNVLTGEIVGAEALLRWNHPERGAVSPAVFIPVLETSGLIVDVGMWVIERSLQQVKEWQR 634

Query: 788 QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  + + +NI+ +    ++  + ++  +    +S   +++  +E +V+ N E +  
Sbjct: 635 MGLWTRNMRLGVNISPRQFRSSQFVDDVKRALRDIEFSAEMLEMEITEGIVIHNLEETIN 694

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            +  L+  GI+  LDDFGT  S +SYL  +P   +K + S +           ++ +I  
Sbjct: 695 TMTTLQTQGINFALDDFGTGYSSISYLKKLPVSILKIDQSFVRDITVDRNDRVLVETISA 754

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           M   +   ++A+ +  +  ++ +++ GC Y Q    + P+  N+   +L+++
Sbjct: 755 MGNMLGLEVVAEGVETQDQLELISQYGCRYYQGYLASRPVDPNAFELMLEKK 806


>gi|148259976|ref|YP_001234103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidiphilium cryptum JF-5]
 gi|326403069|ref|YP_004283150.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|146401657|gb|ABQ30184.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|325049930|dbj|BAJ80268.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 627

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 130/553 (23%), Positives = 251/553 (45%), Gaps = 13/553 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              E        +    W   +     + + D+  + G                +   DR
Sbjct: 65  EALEDLRTIHRIARIGNWRVRLDDHLTSWSEDMHELFGTDPDRFVPLFDVLTGQMDETDR 124

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             F     +     +     E R+R A+     W  I +RP ++  G I+   GI  +IT
Sbjct: 125 TAFLATFRTVAETGQAA-AAEIRIRGAEEGARRWFWIDMRPETDDTGAIVAVRGICQEIT 183

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K +LE I   +  D LT + NR   L+RL  IL  +         ++  DID +K IN
Sbjct: 184 DRKVALERIRYMSSHDPLTNLINRTHLLERLDQILGEARRR-RENVALLTFDIDDFKGIN 242

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G AV D VL  +  RI   ++  D++AR+ G+ F ++         +   A  + ++
Sbjct: 243 DLFGHAVADSVLREIAGRIARQVRESDLVARIGGDEFVVVQAGCEQPELVETLARRLLRT 302

Query: 641 IAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           IA PI L   REI ++AS+G A      +T   +L ++  A++  K    N +  +  S 
Sbjct: 303 IADPIVLADGREIGISASVGIALHPFDGMTPGALLAHSSQALHVIKKERPNTLGFYDASV 362

Query: 700 FRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               +    +++DL LA+++ EL LVY P+  +      G EAL++W+ P  G ++   F
Sbjct: 363 QSEWQKRRALEQDLRLALQHRELSLVYQPMFCMRSSLCSGFEALLRWNSPTHGPVAPDLF 422

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE + +++ +  ++L     +   W       P+ + +N++   +   +L   +   
Sbjct: 423 IGLAESIGLMEEVGTWVLREACAEAARWA-----VPLTVAVNVSPIQIQQGDLASVITET 477

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++ T    +R+++  +ES+++ N +R+   L R++ +G+ +++DDFGT  S L+ L   P
Sbjct: 478 LNTTGLPANRLEIEVTESMLIRNFDRAVDTLQRIKALGVGISIDDFGTGYSSLATLRAFP 537

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F+ +K + S +    E+    AI+ +++ + + +   ++ + +  E     L   G D I
Sbjct: 538 FNKLKIDRSFVRDLAEESESLAIVNAVLGLGRGLRLPVVVEGVETERQADILRDCGADAI 597

Query: 936 QDSHVASPLGFNS 948
           Q      P   ++
Sbjct: 598 QGYLFGRPSPISA 610


>gi|302186419|ref|ZP_07263092.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 897

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F +++ +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDRPIPGEELIEKLK-RYPRRPSA 897


>gi|330809082|ref|YP_004353544.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377190|gb|AEA68540.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1007

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 234/439 (53%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ + + I      D LTG+PNR    DRL   +  +   + L  TV+ +D+DK+K +N
Sbjct: 538 ERQLTEKRIRFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRL-VTVVFLDLDKFKLVN 596

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
           D LG + GD++L ++ +R+   ++  D + RL G+ F IIL  + ++   +      +++
Sbjct: 597 DSLGHSAGDELLKTVAQRLLGCVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQE 656

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           +I  PI L    + VT S+G A++ +    +  +L NA+ AMY AK  G N  + +   +
Sbjct: 657 AILRPIQLGGHTLHVTCSMGLATYPADGSDTDTLLSNADAAMYRAKELGRNSFQFYTSEM 716

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++    ++ +++ L  A+ N E  L+Y P + L   +I+G+EALI+W HP+ G +S  +F
Sbjct: 717 NNKVQGKLAMQDGLRSALYNDEFLLLYQPQVDLQSGQIIGVEALIRWQHPELGMVSPIKF 776

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AEE  +I  I  +++    R   +W++    PPI + +NI+++  ++ +L + +   
Sbjct: 777 IPQAEETGLIVPIGDWVIHTACRQNKAWQNA-GWPPITMSVNISARQFIERDLIDRVMHA 835

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P  ++L  +ES++M + +++   +  L+ +GISL++DDFGT  S L+ L   P
Sbjct: 836 LQETGLDPMYLELELTESLIMQDLQQAISKMKALQAMGISLSIDDFGTGYSSLAALKSFP 895

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +      E   AI  ++I +   +   +IA+ +  E     L   GCD I
Sbjct: 896 IARLKIDQSFVRDLPDNENDKAIATAVISLGHKLNLKVIAEGVETEEQQTFLRDNGCDEI 955

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    +  +    I +LL+
Sbjct: 956 QGHFFSKAVSAEEISRLLR 974


>gi|117620983|ref|YP_856226.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562390|gb|ABK39338.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 992

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 143/637 (22%), Positives = 283/637 (44%), Gaps = 22/637 (3%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILIGFTVIQHVLAT 393
                  + +L     + + + +  +    I Q  L+    L   + L+     QH  A 
Sbjct: 365 PLRYPQASQLLALNSPVYVGIPLHGQHGAPIGQLTLLLDTPLADPMPLLDALSSQHERAA 424

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               +    +  R +     + D +   D     +        I G A   M G     L
Sbjct: 425 VELQRLAADEALRLAEVAFNTHDGLLVMDHKGIILKVNNSFTRITGFADDEMIGQHIVRL 484

Query: 454 PYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +  D    + R  + +     +     E R    D     + + +  + + +G+I  
Sbjct: 485 RPTYYGDHLKQDVRQAVAA-----QEFWMGEERCLHKDGHLFPVRLMVSGVQDEHGEISH 539

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+    DI+++K++   I   A+ D+L G+ NR+S  D +   L  +         ++++
Sbjct: 540 YVCSFYDISKEKEAARHIEQLAYYDDLCGLYNRRSLNDIMQRTLQEA---SGQWGALLLV 596

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-----SENN 626
           D+D +K IND LG A GD +L ++  R+  L +   +LAR+SG+ F ++           
Sbjct: 597 DLDNFKSINDSLGHACGDLLLQAVVERLKGLPQDNLVLARISGDEFALLFSALGQGYVTA 656

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            +    FA  +     +P ++ + ++  +AS+G + ++S       +++ A+ A + AK 
Sbjct: 657 KILAEHFARELMGLFRIPFDIEDHKLHCSASVGISLFSSEDKDHLVLMQQADTATHMAKR 716

Query: 687 RGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G  +   F  +    ++  + +   L  A+ + EL L Y P  R+ +  + G+EAL++W
Sbjct: 717 SGQGNYVFFSEAMAEKEKSKLALNNQLRDALRHHELQLHYQPQYRVDNGALSGIEALLRW 776

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +  +EF+ IAEE  +I+ I  ++++        W ++    P  + +N++++ 
Sbjct: 777 QRSDGSMVPPAEFIPIAEETSLIQDIGYWVMKTACAQYSFWLNRGLAIP-HLSVNVSARQ 835

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                  + ++ ++  T   PSR+ L  +ESVV+ N   S   + +L+++GI L++DDFG
Sbjct: 836 FHTVGFVQQVEYILRDTGVPPSRLLLEVTESVVLENRLESIARMRQLKELGILLSIDDFG 895

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL  +P D VK + S +     +E+  AI+++I+ +AK    T+ A+ +  E 
Sbjct: 896 TGYSSLAYLRDLPADEVKLDRSFIQTLVHSEQDKAIVKAILELAKVFRFTVTAEGVEDEE 955

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +  L  +GC + Q    + PL   ++  LL    P 
Sbjct: 956 QLAILKSLGCQHYQGFLTSRPLTAKALESLLGAAVPG 992


>gi|158426282|ref|YP_001527574.1| hypothetical protein AZC_4658 [Azorhizobium caulinodans ORS 571]
 gi|158333171|dbj|BAF90656.1| conserved putative membrane protein [Azorhizobium caulinodans ORS
           571]
          Length = 861

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 133/599 (22%), Positives = 258/599 (43%), Gaps = 25/599 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-------GIFSDGERQSLAVLGSGDIVW 419
              A  G LVL   LI              S+        +     R       + D +W
Sbjct: 268 WLLACGGTLVLFTWLILARASASARQMEAASRVMQESRAALQLSEARFRDVAEAATDWIW 327

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           + D        +     + G +   + G   +    +H    +       +    RR   
Sbjct: 328 ETDAALRITYLSERYEALTGRSGAELMGQPLD--TVLHS--IEGPLESWTARAAERRVT- 382

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
               R  A+D       +  + + +++G ++ + G A+DIT + ++   +   A  D LT
Sbjct: 383 PLSCRYLASDGTLRLCRVAAKAVRDADGHLIGFRGTASDITAEVEAHRKMEHLALYDPLT 442

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PNR  F++ L+  L        L   +  I +   ++I +  G+A GD VL     R+
Sbjct: 443 SLPNRTLFMEFLSGALSSIGDSQRLVAAL-RIGLANTRQITESYGLAAGDAVLAECALRL 501

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASI 658
            +++   D++ARL    F ++  +  N L + D    ++ ++  PI L     I ++ +I
Sbjct: 502 KQVITDSDLVARLGAEDFALVATAPGNVLAVKDLCARVQAALNAPIRLPEGDLIDLSCAI 561

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716
           G A   +  +    +L++AE A+ HA+      +  F          +  ++ DL   V 
Sbjct: 562 GVALAPNDCMEGELLLRSAEFALQHAQGEEPPGIAFFSADMTEQVQAKRTLEHDLRRTVG 621

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + +  ++Y P      +E V +EAL++W HP +G +S   F+ +AE   +I  +  ++L 
Sbjct: 622 SEDFVVLYQPRFSAATQEPVAVEALVRWLHPGFGLLSPDRFIPLAEASGLIVPLGEWVLR 681

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSES 835
           R    I  W      P + + +N++        +L E ++A +  +   P R++L  +E+
Sbjct: 682 RACATIAKW------PDLVVSVNVSPVQFRQGEQLLETVRAALKDSGLPPERLELEITEN 735

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           V++ N E++  +L  ++ +G+ L +DDFGT  S L+YL   PFD +K +   +    + R
Sbjct: 736 VLLENTEKALDVLVGIKTLGVRLAMDDFGTGYSSLNYLRNFPFDRIKIDRRFVGDLEQSR 795

Query: 896 IA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            A  I+ +II + + +   + A+ +        L + GC+ +Q  H A P+    ++ L
Sbjct: 796 DAQGIVEAIIGLGRALNLQVTAEGVETAGQFAWLRKAGCEELQGFHFARPMSEADLIAL 854


>gi|258654169|ref|YP_003203325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nakamurella multipartita DSM 44233]
 gi|258557394|gb|ACV80336.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nakamurella multipartita DSM 44233]
          Length = 702

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 255/568 (44%), Gaps = 13/568 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     +       R      G+   +   D+    +   P +  +LG     M    RN
Sbjct: 131 AQDEAERAARELQARFRAVFSGAAVGIGVGDVDGRILDVNPALQKMLGYTVEEM--RRRN 188

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +IH  D  +   +    +       +   R    D    W  + +  + ++ G    
Sbjct: 189 VGEFIHPADTADVWQLYQQLITGTIDTFRTAKRFVRQDGDTVWTQLAVSLIRDNRGRPEF 248

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I +  D+T+ ++    +   A  D LTG+ NR  F  RL  +   + TD   R  + ++
Sbjct: 249 QIAVMEDVTDLRRLQIRLEHQAHHDALTGLANRALFQQRLGEL--AATTDPTERIGLCLL 306

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKI 630
           D+D +K IND +G  VGD VLV +  R+   +     ++ARL G+ F I++   +++  +
Sbjct: 307 DLDGFKAINDSVGHGVGDRVLVEIAARLGQTVDGDRQLVARLGGDEFVILVAGTSDAQDM 366

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A A   ++A P+++      VTAS G    T++    +E+++ A++ +Y AK  G  
Sbjct: 367 VAVAEAALAAVARPVSVAGGVFNVTASAGLVERTAAGADPAELVRAADITLYWAKAEGKA 426

Query: 691 HVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F         D+  + + L  A++  E  L Y P+I L D    G EAL++W+HP+
Sbjct: 427 RWAIFDPERSLREVDQYTLAQLLPTALDRGEFRLHYQPLIALADGRFTGFEALLRWEHPR 486

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +    F+  AEE  +I  I  ++L+   R    W +   + P  + +N+A + L D 
Sbjct: 487 LGRLRPDRFIAAAEESGIIVPIGQWVLQESCRQARRWYEITGIRPC-VSVNVALRQLSDG 545

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  +I     +P +++L  +E  V+G+       L  L  +G+ + +DDFGT  S
Sbjct: 546 GLLDDVLRVIEAEQLTPDQLQLELTERAVIGSDHEPLAELQALAALGVGIAIDDFGTGYS 605

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK-----RIAILRSIIPMAKNIETTIIAKDIYGEID 923
            ++YL  +P   +K + S ++             I+RSI+ +A ++  T+ A+ +     
Sbjct: 606 NMTYLRRLPITALKLDQSFVSELRPDAADQTDAKIVRSILTLAHDLGLTVTAEGVETAAQ 665

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
            + L  +GCD  Q  +  +P+  +++L+
Sbjct: 666 ARALRELGCDQAQGMYFGAPVPADALLR 693


>gi|114321830|ref|YP_743513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228224|gb|ABI58023.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1023

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 134/554 (24%), Positives = 247/554 (44%), Gaps = 16/554 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH-INDRDNFRTI 467
                + + +   D     +        I G     + G   +      H          +
Sbjct: 470  VFTSANEGILITDPQARILMVNQAFTRITGYHQDEVEGRDPKLLASGRHGPEFFQELWRV 529

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            LD          Q E   R    + +  +I I  + + +G ++ Y+G+ +DIT+ K    
Sbjct: 530  LDEH-----DHWQGELWNRRKSGELYLQLITISAVRDESGRLINYVGLLSDITDMKAYQR 584

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +      D LT +PNR   LDRL   + L+  +   R  V  +D+D +K INDV G  V
Sbjct: 585  KLEFLTHYDPLTELPNRVLLLDRLRKAMQLAQREQR-RVCVAYVDLDDFKTINDVHGHRV 643

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD VL+ L  R+    +  D  +RLSG+ F ++ ++  +  +    A  +  ++A PI +
Sbjct: 644  GDQVLLELASRLSAARREGDTASRLSGDEFAMVFVNLGSVAECHRMAARVLDAVARPITI 703

Query: 648  LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                +  +ASIG A +   +   + ++L+ A+ AMY AK +G N    F V+  R  R  
Sbjct: 704  EGVALQTSASIGVAHYPQDEEVDAEQLLRQADQAMYQAKLQGKNRHHVFDVAGDRQLRDQ 763

Query: 707  IKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +    L LA+   E  L Y P + L   E+VG EALI+W HP+ G +  + F+      
Sbjct: 764  HESLTRLELALARGEFVLHYQPKVNLRTREVVGAEALIRWQHPERGLLPPAAFLDDLNGQ 823

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LY 823
             +  A++ +++ R    + +W +Q     + + +N+ +  L   +  + ++ L+++    
Sbjct: 824  PLEVAVSRWVMARALEQVETWSEQG--VHLPVSVNVPALHLQQADFVDQIRELLARHPGL 881

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              + ++L   ES  + + +    ++     +G+  +LDDFGT  + LSYL  IP   VK 
Sbjct: 882  PRNSLELEILESSALASLDHVSRVIQGCAALGVDFSLDDFGTGYASLSYLKRIPVRIVKI 941

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +         +A+L  I+ + +  +  +IA+ +      + L  +GC+  Q   + 
Sbjct: 942  DRSFVRDMLEDADDLALLEGIVRLTQVFDLQLIAEGVETPEQGERLLELGCEQAQGYGIG 1001

Query: 942  SPLGFNSILKLLKE 955
             P+   S+L+ L  
Sbjct: 1002 RPMPAGSLLEWLSA 1015



 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 10/226 (4%)

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI------WFIGLWMA 357
           P  +A +  I+     +      I  G             W  + +        +  ++ 
Sbjct: 233 PPPSAEVLAISDKLGGMRGVRATIDAGAADVVPLDFAGQTWAAVLLPIHDPAGELVAYVV 292

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
                    +         L+  L+   V+  +L   +  + +  +   Q        D 
Sbjct: 293 SFAPDPFSRMFRWDFIRAALVATLLLGAVLMLLLRVLHSREVLRGERAYQQAITDTMADG 352

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYR 475
           ++  D         P    +LG     + G   + L + H +D    + +  L+  V   
Sbjct: 353 LYAQDKKGRLTFINPVGRDLLGYREEDVLGRRAHALFHQHDDDGLAGSGQCPLERRVAAG 412

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           R   + E   R  D     + +  RP+    G     + +  DITE
Sbjct: 413 R-YFEGEETFRRRDGSEIPVEVSSRPLY-QGGHWAGSVTLFRDITE 456


>gi|148359051|ref|YP_001250258.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|296107100|ref|YP_003618800.1| sensory box protein/GGDEF domain protein/EAL domain protein
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148280824|gb|ABQ54912.1| sensory box protein/GGDEF domain protein/EAL domain protein
           [Legionella pneumophila str. Corby]
 gi|295649001|gb|ADG24848.1| sensory box protein/GGDEF domain protein/EAL domain protein
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 840

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 148/809 (18%), Positives = 320/809 (39%), Gaps = 69/809 (8%)

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252
            I+   A    +                  ++   +  ++    GF   ++++  G   I
Sbjct: 54  AIVYNTALCFIVLSLAILFSLNC---YYKSSLILGITVFVFSGLGFSQHILDVNLGIDEI 110

Query: 253 WRACSEI--------ALSSSLIIFLFMY-------LHWNRWHAKVGYITFSGIACIAILF 297
           +                +++   FL +        L   R            +     + 
Sbjct: 111 FFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAIL 170

Query: 298 CMSFY-------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPA 343
            +S Y              PM   +     + S      Y+      +     A+  + +
Sbjct: 171 FISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCS 230

Query: 344 WILIFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
           + ++  + +     +    RL+        V G + +  L G  +    LA        +
Sbjct: 231 FCIMLTFTLLSFEILEKENRLNLSFSIATFVIG-IFLSFLFGLVIRLWQLAKLSAIAAKY 289

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------------GSMHGPI 449
           +  E     +  + D +   D   + +        +                   ++  +
Sbjct: 290 AFLE-VEATLESTADAILVVDKEGNVINYNQRFLDMWRQRINPPRIINYLDIKEEINKQL 348

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            N    IH          ++  + +   +  +E R++      ++         + +  I
Sbjct: 349 VNKREVIH---------RINQTIKHPDHQNSFELRLK---GNLYYDCYTQPLKLDED--I 394

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  +    DIT  K+    +   +  D LT +PN+   +D L   +  + +D  +   V 
Sbjct: 395 IGRVWSFRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKI-VGVY 453

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D++ +INDV G + GD+++  + +R+ + +    IL R+SG++F I++ S +   +
Sbjct: 454 LLDLDRFTQINDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIRE 512

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +  +   P+ +    I ++ SIG + +     T   +L  A++A+   K  G 
Sbjct: 513 AVLGVTRLLAAFHEPVIMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKADIALSRTKIEGR 572

Query: 690 NHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+ + +           ++++ +L  A+   E  L Y PI+ L    + G EALI+W+HP
Sbjct: 573 NNFQFYTRDMNTYTLEHILLENELRNAIRKREFVLYYQPILELRSLNLNGFEALIRWNHP 632

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +   +F+ +AEE+ +I  I  ++L  + + I +W+ Q     + + +NI+ K L  
Sbjct: 633 RNGLLLPEKFIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVN-NLKVAVNISPKHLKF 691

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++S+       I+L  +E++++         L  L++IGI +++DDFGT  
Sbjct: 692 RHLPIRINEILSEFQVKSESIELELTENILIDKSSGIIDTLNELKEIGIKISIDDFGTGY 751

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D +K +   +      +   A++++II MAKN+   +IA+ I  +  ++
Sbjct: 752 SCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKYQLE 811

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            L  +GC Y Q  +   P+  +  ++ L+
Sbjct: 812 ILQNLGCHYGQGYYFYHPMPPDKCMQFLQ 840


>gi|296102518|ref|YP_003612664.1| hypothetical protein ECL_02167 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056977|gb|ADF61715.1| hypothetical protein ECL_02167 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 860

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/569 (21%), Positives = 270/569 (47%), Gaps = 21/569 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +++         + +  +R       + D  W+ D+       +    T+ G       G
Sbjct: 297 ENIFLLEQARLNLITSEKRFRDVSETTSDWFWETDLSLTITWLSGRFTTVTGYDESQWLG 356

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSN 504
              + L         +   +L++ V  R    ++EF+      A     +  +  +  + 
Sbjct: 357 RKLDALF-------PSTNGLLNTCVRRRELSGRFEFKNCPYTNAQRSTSYCTLLAKFSAQ 409

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G ++   G A+D++ + ++ + +   +  D LTG+PNR    + LT  L       N 
Sbjct: 410 PDGTVV-LRGAASDVSLEVEATKRVEFLSRHDELTGLPNRYHIKEFLTGQLAKEDIH-NS 467

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +D+DK+K +ND+ G + GD +L  +  R+ + ++  D +AR  G+ F ++L + 
Sbjct: 468 PFAMICLDLDKFKPVNDIFGHSTGDALLGEVALRLKQCVRRGDFVARQGGDEFMLLLDNT 527

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   I +    + + +  P  +   ++T+  S+G A       +++++L+ A++A+Y A
Sbjct: 528 RHLDHIEEVCHRIVQELNRPFTIDGNDVTIGVSMGIALAPQDSTSANDLLRYADIALYQA 587

Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +R       ++R  ++  L  A+   +LYLVY P   L    I  +EAL+
Sbjct: 588 KQSGRNRWVYYRQDMSEKLTERRKLELALKTAIREDQLYLVYQPRYNLRHSRIDAVEALV 647

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ GN+   +F+ +AEE  +I  ++ +++ +   +         +P + + +NI++
Sbjct: 648 RWQHPERGNMMPDQFIPLAEETGLIINLSNWVIRKACTE-----THEKLPGLSVSVNISA 702

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +   ++L E ++A++ +T   P+R+++  +E+V + NPE++   +  L+K+G+ + +DD
Sbjct: 703 IEFQASDLAERIKAILDETGLEPTRLEIEVTENVTLSNPEKTLQTMMALKKMGVRILIDD 762

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  + LSYL    FD +K + S +   G + +  +++  II + K     + A+ +  
Sbjct: 763 FGTGYASLSYLRKFQFDGLKLDKSFIFSLGDSTQNQSVVEKIIDLGKAYSMEVTAEGVET 822

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +  L +  CD +Q   +  P     +
Sbjct: 823 VEQLSFLKKNKCDEVQGYLLGKPAAIADL 851


>gi|90425430|ref|YP_533800.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90107444|gb|ABD89481.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 895

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 262/581 (45%), Gaps = 21/581 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGL 440
               + + +      SQ + +  +   L V      +          +        IL  
Sbjct: 313 FLIALFEDITERRSLSQELVNTKKFLELVVDNIPISLTVQSTQDGRYLFANRGAEAILNR 372

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     L   +  +        D+    RR  +  E  +   D      + R  
Sbjct: 373 CREDAVGLSA--LDIFNPKE-AKLIAERDANAIRRRDLMTEEHPISTKDG-LRLFLTRRV 428

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G     I    DIT+++++   +   A+ D LT +PNR +FL  L  +++ +  
Sbjct: 429 TVVDGEGAPQYLIKTHEDITDRRQTEAQMAHMAYHDGLTDLPNRLAFLQALAQMIE-ACR 487

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D      V+ +D+D  K+INDV G AVGD +LV + R I  L     +++RLSG+ FG+I
Sbjct: 488 DTTEEFAVLSVDLDGLKEINDVFGHAVGDKLLVEVARCIQ-LSSRGGVVSRLSGDEFGLI 546

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A  + K++A    +  +++ +  + G A + ++   ++ +L NA  A
Sbjct: 547 IDGPQ-PAAAMHLAAEVAKAVAGGFLIDGKQVRIGVTTGVAVFPANGADAASLLANAGAA 605

Query: 681 MYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE----E 734
           ++ AK   RG   +    +     DR ++ +DL  A++N E+ L Y P           +
Sbjct: 606 LFRAKARMRGSVSLYEPEMDRQIRDRRILHQDLSAAIKNGEMSLHYQPQANGCTRIGGDD 665

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            VG EAL +W HP  G +  S+F+ +AEE  +I  +  ++L    R+  SW       P+
Sbjct: 666 FVGFEALARWFHPTRGFVPPSDFIPLAEESGLIVEMGEWILREACREAASWSK-----PL 720

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++    L+++L   +  ++ +T   PSR++L  +E V++ + +R   LL RL  +
Sbjct: 721 QIAVNLSPAQFLNSDLVSAVHTILLETGLKPSRLELEITEGVLIEDFDRGLSLLRRLTAL 780

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S L+YL   PFD +K + + +       +  AI+R++I +   +  +
Sbjct: 781 GVRISMDDFGSGYSSLTYLQAFPFDKIKIDRAFVMNLGHNPQSAAIVRAVIGLGHGLGVS 840

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+A+ +  +  +  L   GCD +Q   +  P       +L+
Sbjct: 841 IVAEGVETQQQLDFLVAEGCDAVQGYFIGKPAPIEQYSRLV 881



 Score = 39.9 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 48/206 (23%), Gaps = 29/206 (14%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNW 452
              S+ + +  +     +      V    I     +          GL    + G     
Sbjct: 198 RELSRQLATAKQFLESVIDNIPVCVAAKAIEDGRYILANRAFERFCGLPRDRILGRRTA- 256

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                              +      L+ E  V         +        +        
Sbjct: 257 -ELFSAATAATIGEADRMAIDSPHDPLRGELTV-DVGGGDRVIDNNCVVACDDKNRPEFL 314

Query: 513 IGIANDITEQKKSLEGILC------------------NAFQDNLTGIPNRQSFLDR-LTT 553
           I +  DITE++   + ++                    + QD       R  F +R    
Sbjct: 315 IALFEDITERRSLSQELVNTKKFLELVVDNIPISLTVQSTQDG------RYLFANRGAEA 368

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKI 579
           IL+    D      + + +  + K I
Sbjct: 369 ILNRCREDAVGLSALDIFNPKEAKLI 394


>gi|330980029|gb|EGH78295.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 897

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F +++ +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDRPIPGEELIEKLK-RYPRRPSA 897


>gi|254387213|ref|ZP_05002479.1| sensory box/GGDEF protein [Streptomyces sp. Mg1]
 gi|194346024|gb|EDX26990.1| sensory box/GGDEF protein [Streptomyces sp. Mg1]
          Length = 635

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 135/611 (22%), Positives = 264/611 (43%), Gaps = 27/611 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVR 425
           +     G       +   T  +H                R    A   +   +   D   
Sbjct: 13  VSGTSEGTGSAADSIRSATTERHPAVPATAPSSRAESERRDYRAAFNAAHLAMAVVDRGG 72

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             V     +A +LG    ++       L  +               +  R+ RL+   R+
Sbjct: 73  HVVAANDALAALLGTEPHALVEQHAADLVDLAAE--ARTWQAYQEVLRGRQARLRCTRRL 130

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           +  D    W  + + P+  +       +    DI++++     +      D +T +PNR 
Sbjct: 131 KHPDGHSLWTEVTLGPVPGT----SEVLLSVADISDRRDLQARLRHLQMHDPVTRLPNRT 186

Query: 546 SFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
            F +RL+  L+ S        R  +  +D+D +K +ND LG  VGD +L ++  R+ +  
Sbjct: 187 LFFERLSAALEHSSYEQGGTGRIGLCYLDLDGFKAVNDTLGHRVGDRLLTAVAARLTQCA 246

Query: 604 KFPDI-------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
                       +ARL G+ F +++     + ++AD A +   ++  P +L  + ++V+A
Sbjct: 247 DQSGYGRTGGHLVARLGGDEFALLVEDSTGTEQLADLARSALAAVQEPFDLAGQRLSVSA 306

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLA 714
           SIG     S+  +++ +++ A+  +Y AK  G      F             +   L  A
Sbjct: 307 SIGVVERASADTSATALMQAADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSTLRPA 366

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           VE  E  L Y P++ L    + G+EAL++W+HP++G ++ + F+ IAEE   I  +  ++
Sbjct: 367 VERGEFALEYQPLVDLESGAVRGVEALVRWNHPQFGTLTPNRFIGIAEEDGSIVQLGRWV 426

Query: 775 LERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           L    R    W+ +Q +  P+F+ +N+A + + D++L   +  ++++T  +P  ++L  +
Sbjct: 427 LRTACRQARRWQIEQPSDAPVFVSVNVAVRQVWDSDLVGDVAEILAETGLAPQLLQLELT 486

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--- 890
           ES VMG+  R    L  L  +G+ + +DDFGT  S L+YL  +P   +K +GS + G   
Sbjct: 487 ESAVMGSAGRPLQALQALSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRY 546

Query: 891 -----STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                       I+ +++ +A  +  T+ A+ +        L R+GCD  Q    +  + 
Sbjct: 547 DDGAHPNPADETIVEALVQLAHRLGLTVTAECVETVGQAARLRRVGCDTGQGWLYSRAVA 606

Query: 946 FNSILKLLKER 956
            + I +++  +
Sbjct: 607 PDVIARMIGRQ 617


>gi|289523843|ref|ZP_06440697.1| sensory box protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502499|gb|EFD23663.1| sensory box protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 568

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 243/555 (43%), Gaps = 14/555 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465
             L V    + V   D     +   P   TI G ++    G   R      H  D   ++
Sbjct: 17  LELIVNNIKEGVVVTDTGGTILWVNPAFTTITGYSAEEAIGQNPRILKSDYH--DHSFYK 74

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + DS +    G  + E   R    + +  ++ I  + +       ++ I  D+T+ K  
Sbjct: 75  NLWDSILT--DGFWEQEIWNRRKSGEVYPELLSIYALKDHRNITRYFVSIFTDLTDVKAK 132

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +    + D LTG+ NR  FL  L + +  +  +   +  + ++D+D++K IN   G 
Sbjct: 133 DRQLHNYLYVDPLTGLYNRNYFLKDLKSKVGDA-LNSTKQVGIFLMDLDRFKLINSTFGY 191

Query: 586 AVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             GD +L  ++ RI        D L RL  + F  ++ +  + L+       + K +   
Sbjct: 192 LYGDHILQLVSERISSNKKHRNDTLYRLGEDEFA-LIATLEDPLEARRIGRDLIKVMQDY 250

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702
               +  I V  S+G           SE+++ AE+A+  AK RGGN    +         
Sbjct: 251 FASDKGPIYVRLSMGIVIAPVDGTKESELMRKAEIALNKAKSRGGNSFAFYDNYFEKQYR 310

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ ++  L  A+E  E  + + P I +    + G EAL++W H    +IS + F+ +AE
Sbjct: 311 SRLSLENALLSALERKEFRMAFQPQIDVSTGRVFGAEALLRWRH-NGEDISPALFLPVAE 369

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E+ +   I  ++L+   + +  W +Q       + IN+++    D    E +  +IS   
Sbjct: 370 EISIAPDIGFWVLKECCQRMSEWTNQGIELE-KLSINVSASQCHDETFLERVFKIISDAD 428

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P RI L  +ESV+M +  + + L  RL+ +GI + +DDFGT  S LSYL   P D +K
Sbjct: 429 VNPERIMLEITESVLMEDRNKIKELFKRLKTLGIGVAIDDFGTGYSSLSYLKDFPVDILK 488

Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    + E+   I+R I  + + +   +IA+ +  +  ++ L  +G  Y+Q    
Sbjct: 489 IDKSFIDNVETDERDRVIVRGIAKVGEVMGMEVIAEGVERKEQLEILRNLGIRYVQGYLY 548

Query: 941 ASPLGFNSILKLLKE 955
           + PL  + ++     
Sbjct: 549 SPPLEKDELIAFCTS 563


>gi|114319701|ref|YP_741384.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226095|gb|ABI55894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 693

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 131/587 (22%), Positives = 256/587 (43%), Gaps = 14/587 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            L  +++     + +   +     Q      E  S     + + +   D  +  ++    
Sbjct: 114 CLFSVLLSREQALRRERESLILQLQDELHAHEIASAVFNATSEGIMVTDAEQRIISVNRA 173

Query: 434 IATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
                G       G   + L    H  D   +  + +    +  G  + E   R  + + 
Sbjct: 174 FVNTTGYEPREALGQSPSILSSGRHSAD--FYADMWEQLREH--GTWEGEIWNRRKNGEV 229

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           +   + +  + +  G I  Y+G+ +DIT+ K+  + +   A  D+LTG+PNR  FLDRL 
Sbjct: 230 YPEWLHVDAIRDEAGRITNYVGVFSDITKHKELHDRLHALANYDSLTGLPNRTLFLDRLR 289

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            I+ L+        +++ + +D++K+IND      GD VLV + +R+   L+  D LAR+
Sbjct: 290 QIIALA-EHRGFSFSLLYLGLDRFKEINDTYSHTAGDQVLVEVGQRLQTCLREKDDLARM 348

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I++  E   L +   A  + +++  PI + +    V+ASIG   +      +  
Sbjct: 349 GGDEFVILVEGE--ELNVHTVAQRLLRTLENPILIDQEPFFVSASIGICHYPDDGADTDT 406

Query: 673 MLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++  A+ A+Y AK   +GG  + S         RV +  DL  A+E++ L L + P   L
Sbjct: 407 LMATAQSALYQAKAAGQGGFSLYSPDAHERARQRVRLVSDLREALEHNRLELAWQPQFGL 466

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            +  + G EAL +W       IS +EF+ +AE+  +I  +  ++++    +  +      
Sbjct: 467 DNRRVTGFEALARWQRDDGRPISPAEFIPLAEQSGLIAQLGRWVIDTATAEAKALLQARP 526

Query: 791 MP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                   +N++   L D+ L + +   ++        +++  +ES +  + ER    L 
Sbjct: 527 ELEQARFALNLSPYQL-DDSLPKILTDGLAAAGLPAGALEVEITESALFADQERVTETLN 585

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            +   G+ L +DDFGT  S ++ L  +P   +K + SL+T          I+R+++ MA+
Sbjct: 586 AIGSTGVRLAVDDFGTGYSNIARLKLLPIHRLKLDRSLITDLEHDHSDREIVRALLAMAE 645

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +   ++A+ +  +     L + GC   Q    A P     +L  L+
Sbjct: 646 ALGLDVVAEGVETQAQATFLAQAGCPQAQGYLYARPQPLEPLLTWLR 692


>gi|311279469|ref|YP_003941700.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
 gi|308748664|gb|ADO48416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
          Length = 570

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 128/559 (22%), Positives = 247/559 (44%), Gaps = 28/559 (5%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSF 471
            +  IV   +     +        I   +   + G     +    H      F     + 
Sbjct: 16  NAHAIVAITNQKGVIIQVNDRFCEISQYSRDELCGNTHKLINSGYHP---PRFFKEFWNT 72

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           + + R   Q E   RA D   +W+   I P    NG   +YI I  DIT+ K   +    
Sbjct: 73  IAHGR-IWQGEVCNRAKDGSIYWVYSTIVPFLGDNGRPDKYIAIRADITKLKHVEQEAQR 131

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            + QD+LTG+ NR+ F +R        +        +M ID+D +K  ND  G   GD +
Sbjct: 132 LSRQDDLTGLYNRRMFAERFLEA-QRDSALSGQFCALMSIDLDGFKGFNDHFGHGHGDKL 190

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPIN 646
           L+ L RR+ E  +  D +AR+ G+ F +IL    +         A     + K++A P  
Sbjct: 191 LIELARRLTECTRKRDTVARMGGDEFLMILTDLGDNADTAIENAAKIGKRILKAMAAPYF 250

Query: 647 LLER---------EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           L +           ++++ SIG   +  + IT  E+L   + A+Y AK+ G N +  +  
Sbjct: 251 LPDSAHSPSRKQSRLSISGSIGGRIFFGNHITMDELLVQVDQALYQAKNNGKNQLVFYET 310

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              + + +     ++  L  A++  E+++ Y PI+    + I+G+EAL +W  P+ G IS
Sbjct: 311 DRAQHEAIRKNIALEISLRSALDRGEMFMQYQPIVD-RQQNILGMEALSRWRSPEHGLIS 369

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AE   +I +I ++ LE   + + +W   A      + +N+++         + 
Sbjct: 370 PAQFIPLAERAGLIGSIGMWALETGCKQLAAWTQDAEKAAWTLSVNVSALQFNAPSFFDD 429

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  ++++T   P ++ L  +E++ +       +  + RL   G+ + LDDFGT  S ++Y
Sbjct: 430 VLNILTRTRIPPHKLILEVTENIFLNAQGSPLQEGIRRLMAHGVGIALDDFGTGYSSMNY 489

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + + ++    ++K   I+ +++ +AK ++  ++A+ +        L   
Sbjct: 490 LRNLPITRIKIDRTFISDIAHSKKDQGIVSAMLTLAKALDLQVVAEGVETTAQFDYLKEA 549

Query: 931 GCDYIQDSHVASPLGFNSI 949
           GC   Q    A P   ++ 
Sbjct: 550 GCCAFQGYLFAKPQDISAF 568


>gi|86739716|ref|YP_480116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. CcI3]
 gi|86566578|gb|ABD10387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. CcI3]
          Length = 725

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 135/632 (21%), Positives = 257/632 (40%), Gaps = 22/632 (3%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
                 L        D    + A + G +                       + +   R 
Sbjct: 86  ICGTRLLTDLRLGTADGYGARLAALQGGLAQGYAHALRERILAGQDSIHRAALHASDARF 145

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            +   GS   +   D     +        +LG+  G + G   +     H  D    R  
Sbjct: 146 RMIFTGSAIGILINDGGGRIIDANDAFLRMLGVGPGQVQGRSIDEFA--HPEDARELREA 203

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +        ++ E+R         W  +    + + +G     + +  D+T++     
Sbjct: 204 YAAQRTAGPEHIRMEWRFTGIGGSVVWAELTTSCLRDDDGRCRAQLSMIVDVTDRHLLQN 263

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+PNR   ++R+  ++    T       +  ID+D +K +ND LG  V
Sbjct: 264 QLRRQARHDPLTGLPNRTVLIERVHELMA---TGPERCIGLCFIDLDGFKMVNDSLGHDV 320

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LV++T R+  +L    +L R+ G+ F I++     +      A  +  ++A P+ +
Sbjct: 321 GDRLLVAVTDRLRRVLSPEQLLVRMGGDEFVILVADTAGTADAVAVAETVLAALASPLRV 380

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRV 705
            +  +++ ASIG      +    +++L+ A++ +Y AK  G      F       +  R 
Sbjct: 381 GDHALSIGASIGIVERPVAGGDYADLLRAADITLYRAKAEGKGRWALFEAERGARQVTRH 440

Query: 706 MIKEDLCLAVENSELYLVYHPIIR--------LMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +   L  A+E  +  + Y PII         +    +VG+EAL++W HP  G +    F
Sbjct: 441 TLSTMLPRALEQDQFVVEYQPIIALGDGAGARMAAGAMVGVEALVRWRHPGLGLLPPDLF 500

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE   I  +   +LE   R    W++      +F+ +N+A++   +  L E ++ +
Sbjct: 501 IGMAEETGQIVPLGRRVLELACRQARQWQECHPH-ALFVSVNLAARQTREAGLVEQVRRI 559

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T  SP  ++L  +ES  MG  +    +L  L ++G+ + +DDFGT  S L+YL  +P
Sbjct: 560 LDETGLSPDLLQLELTESAFMGTADEPLRVLRGLAEMGVRIAIDDFGTGYSNLAYLRRLP 619

Query: 878 FDTVKFNGSLM------TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             T+K  G  +        +      I+++++ +A  +  T+ A+ +   +  + L    
Sbjct: 620 VHTLKLAGPFVEGFHSARDADPGDEEIVQTLVTLAHTLRLTVTAEGVETPMQAERLRAAA 679

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           CD  Q    A PL    I + +  R      T
Sbjct: 680 CDSAQGFLFAPPLTAEEITQRILTRSAGSDRT 711


>gi|74317498|ref|YP_315238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Thiobacillus denitrificans ATCC 25259]
 gi|74056993|gb|AAZ97433.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC
            25259]
          Length = 1012

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/570 (23%), Positives = 248/570 (43%), Gaps = 22/570 (3%)

Query: 399  GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                  E+ +L   A+    +     D          +    LG     +       +  
Sbjct: 451  ERQRASEQLALVNFALNHVKEAALLADENAQFHYVNDEACRSLGWTPEELLRLKVTDIDR 510

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +  R  +R + +         ++  +  +    +   + + +       G     + +
Sbjct: 511  -DLTGRGQWRALWEQIKVLNSMTIEGHY--KTRSGRTFPVEVSVNYFV--YGGREYVLSL 565

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              D+TE+K+    I   A+ D+LTG+PNR+  LDRL     LS+        +M++D+D+
Sbjct: 566  VRDVTERKEVEAQIRSLAYFDSLTGLPNRRLLLDRLNQA-RLSSERTREYGALMILDLDR 624

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----I 630
            +K +ND  G  VGD +L+ + RR+   ++  D + RL G+ F ++L    +         
Sbjct: 625  FKTLNDTQGHDVGDRLLIDVARRLTASVRQNDTVCRLGGDEFVVVLEGFGSDEDQAVTQA 684

Query: 631  ADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
               A  +R ++  P +L         T S+G   +     T+  +LK A++A+Y AK  G
Sbjct: 685  EAIAEKVRAALNQPYSLSGNGSRFHSTTSVGLTLFCGHDATADMLLKQADVALYQAKDAG 744

Query: 689  GNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             N V  F  +       R+ ++  L  A+E  E ++ Y P +    E ++G EAL++W  
Sbjct: 745  RNLVRFFNPAMQAAIDTRMAMEAALRQALERDEFHVYYQPQVDQR-ERVIGAEALLRWRP 803

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                 IS  EF+ +AEE  +I  I  ++L+     + +W        + I +N++++   
Sbjct: 804  QGNEAISPLEFIPLAEETGLILPIGKWVLDVACAQLKAWESDPRAAHLKIAVNVSARQFH 863

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            + +    +Q  ++++   P+R++L  +ESVV+   E     +  L  +G+S  LDDFGT 
Sbjct: 864  EPDFVATVQDSLARSGVDPTRLQLELTESVVLEKIETVVSRMEELNALGVSFCLDDFGTG 923

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S LSYL  +P D VK + S +          AI+++I+ M++++   +IA+ +      
Sbjct: 924  YSSLSYLKRLPLDQVKIDQSFVRDVVDDSNDAAIVQAIMAMSRSLGLNVIAEGVETHAQR 983

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              L    C   Q      P+      ++LK
Sbjct: 984  DFLAG-KCLGYQGFLFCEPIPIEQWERVLK 1012



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 89/287 (31%), Gaps = 20/287 (6%)

Query: 257 SEIALSSSLIIFLFMYLHWN-RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
           + +  ++S+ +     L     W   +  ++  G A + +++          A+I    +
Sbjct: 177 ASLIAAASIGLVAEPTLRLRFSWSYWLFLLSLVGSATVWMIWNTWALRGETVANIRVDAV 236

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLL------IPAWILIFIWFIGLWMAITKRLDNDIIQP 369
            S+          +   G    +        I   + +    +     +      D+   
Sbjct: 237 FSLTALGMGVATLYWQVGASPNLHWERWSQAIVRVLPLATVVLAGSAVVLLGDRTDVSAT 296

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSLAVLGSGDIVWDWDI 423
           +     +  + +I   +++  +     +Q       +     +++L +    D+VW  D 
Sbjct: 297 SRTAVTIASLTVIVLAMLRQGMLLREHAQLKIVTRNLEESERQKNLILHTLPDLVWLKDA 356

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQY 481
                   P      G     M G        +       FR          +    +  
Sbjct: 357 DGVYQMCNPAFERFTGRTEAEMRGKTD--FDIVGPELARKFRNEDAQAMLADHPLTSMHA 414

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              ++A D +   +      + + +  +L  +GIA D+TE++++ E 
Sbjct: 415 ---LQAVDGRDVQIESVKTTLRDRDRRVLGILGIARDVTERQRASEQ 458


>gi|330955000|gb|EGH55260.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 897

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F +++ +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLIDN-TDQEAGQATATQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDRPIPGEELIEKLK-RYPRRPSA 897


>gi|209523402|ref|ZP_03271957.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496144|gb|EDZ96444.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 655

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 143/558 (25%), Positives = 243/558 (43%), Gaps = 45/558 (8%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYI-------HINDRDNFRT----ILDSFVGY 474
                 P      G  +        + +          H  +            D  +  
Sbjct: 72  RITFVNPLFTGNTGYTADEFFSKNPSLMQITKTLREGSHQENPALVNRFKDVSEDQHLPG 131

Query: 475 RR------------GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                         G  Q E   R  +     ++   RP+ +++    R       I   
Sbjct: 132 GSSLNTSDNEGELSGIWQCE-PSRHKE-----IVKSQRPVLDADKKRRRREEARLLI--- 182

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                     +  D LT + NR  F+  L  +++ +  D   +  V+++D+D++K IND 
Sbjct: 183 --------YKSTHDGLTDLYNRSYFMRELDEVVERAKEDPEYQFVVLLLDVDRFKIINDS 234

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L  +  R+ E +     +ARL G+ F I+    NN  +I+  A  ++  + 
Sbjct: 235 LGHQVGDRLLEGVGERLRECIPPWHTVARLGGDEFAILFDDLNNLTQISQTAQNIQYHLQ 294

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            PI L E+E+  T SIG A    S     E+L++A+ A+  AK +G      F   +   
Sbjct: 295 QPIILGEQEVFSTVSIGIAISNVSYSNGKEILRDADTALSQAKSKGKACHVIFNPTMHRE 354

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             DR+ ++ DL  A+E  EL L Y PII L   EI+G EALI+W+HPK G +S S+F+ I
Sbjct: 355 AWDRMQLENDLRHAIERQELQLHYQPIISLETLEIIGCEALIRWEHPKRGWVSPSQFIPI 414

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALIS 819
           AEE  +I+ I  ++L      +  W+         F+ +N+++  L + +L   +Q ++ 
Sbjct: 415 AEETGLIQPIGEWVLRSACETLHRWQLMFPQGKQPFMSVNLSTYQLTNPQLVNKVQTILE 474

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P R+KL  +ES +    E     +  L ++GI L +DDFGT  S LS L + P  
Sbjct: 475 ETGCDPCRLKLELTESTIAEYAEVVVPQMRELSELGIKLCIDDFGTGYSSLSRLYHFPIH 534

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S + G  E   ++ I  +I+ +A  +   +IA+ +     +  L   GC   Q 
Sbjct: 535 TLKIDRSFIEGIDESQDQLKIAYAIVNLAHTLGLEVIAEGVETPEQMAVLQAWGCQLCQG 594

Query: 938 SHVASPLGFNSILKLLKE 955
              +  +    + + L +
Sbjct: 595 YLFSKAVDDQKMEQFLSQ 612


>gi|146305401|ref|YP_001185866.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas mendocina ymp]
 gi|145573602|gb|ABP83134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Pseudomonas mendocina ymp]
          Length = 1254

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 135/572 (23%), Positives = 254/572 (44%), Gaps = 21/572 (3%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                   R    V  + + +  +      V    +   +L      + G     +     
Sbjct: 690  ARREAEARYHTLVEHAPEAILLFSPEGGIVECNENALQLLRYRREDLLGKTIQSISPPRQ 749

Query: 459  NDRDN----FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             D        R  L   +       ++  R   +  +     +R+  M    G+ L    
Sbjct: 750  ADGSLSSRTGREHLQRAIAGDTPVFEWTHR--DSAGRQLPCEVRLVRMP---GEELLIRA 804

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               DI+E+++    I   A+ D LTG+PNR+  LDRL   +D    + +L   ++ ID+D
Sbjct: 805  SVLDISERQRYQREIERLAYSDELTGLPNRRLLLDRLQHAMDRENREGSL-GALLFIDLD 863

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LK 629
             +K +ND LG  +GD +L  +T R+   L+  D LARL G+ F ++L +  +        
Sbjct: 864  HFKTVNDSLGHLIGDALLCEVTTRLARELRTEDTLARLGGDEFVVLLEALGSEPQAVAEH 923

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             A     + + +     +   E+ ++ASIG A        ++++LK A+ AMY AKH G 
Sbjct: 924  AAAVGEKLLRGLQGSCLIEGHELAISASIGIALHPLGLQRAADILKQADTAMYRAKHAGR 983

Query: 690  NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            N +  F          R+ ++ +L  A+   +L LV+ P + L D+ + G E L++W HP
Sbjct: 984  NALHFFAPEMQAAIDQRLQLQGELRQAIARQQLQLVFQPQLVLADDTVAGAEVLLRWLHP 1043

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            + G IS  +F+ +AEE  +I+ I  ++LE+    +  W+ Q   P + + +N++ ++L  
Sbjct: 1044 ERGEISPDQFIPLAEETGLIQDIGQWVLEQSCATLARWQAQ--WPQLVLAVNLSPRELRQ 1101

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                  ++  + +       ++L  +E V++ + +R    + +L+  G+   +DDFGT  
Sbjct: 1102 AGCVARVEDCLRRHGVPAQALELEITEGVLLEDVDRCIGNMQQLKAQGVRFAIDDFGTGY 1161

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S L+YL  +P D +K + S +           ++++I+ +A+N++   +A+ I     + 
Sbjct: 1162 SSLTYLKRLPLDRLKIDRSFVADLDGDASGRMLVQTILMIARNLDLECVAEGIEQPSQLA 1221

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             L   GC   Q      P+     L  L+ R 
Sbjct: 1222 LLREQGCALGQGYLFGKPMVEAEFLAWLQARQ 1253



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 104/335 (31%), Gaps = 16/335 (4%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
            + ++     +L P   +A  +   + +    L +     S  + +  A + +AL++ L+
Sbjct: 113 LLRFLAFG--VLAPAALVALGLQANLWLTGLQLGEHWAQASLAVWLNDAINLLALATPLL 170

Query: 267 IFLFMYLHWNRWHAKV----GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
           +F    L    W  +             +    L     +  ++    +   L ++    
Sbjct: 171 VFGSPLLRARGWLPESTAADAQALSISRSWRGWLLAFGIFLALMALVGSLPLLVALPFLG 230

Query: 323 TYFIIYHGMKGYERAVL-LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
              +       +  A+   +  +       +         LD    Q  L   L++   L
Sbjct: 231 IGMLALALRYAFAGALYGAVLVFAATLPLPLLRGDPGFAMLDLPRSQLQLAVLLLMGAAL 290

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR---DRVTTTPDIATIL 438
           +    +  +      S  +     R +LA+  S   V   D  +     V        I 
Sbjct: 291 LVGRALGDLRQALSRSARMQQQLARANLAMEASPLGVTIADARQPDLPLVYCNAAFTQIT 350

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G ++    G    +L     +D        L S +   R       R    D +  W  +
Sbjct: 351 GYSADETLGRNCRFLV---ADDHAQLELQPLRSALREGRSG-HAVVRNYRKDGRPFWNEV 406

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            + PM +  G I  ++G+  D+TE+ +    +   
Sbjct: 407 VLAPMRDERG-ISHFVGLQQDVTERVELAAQVEQQ 440



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 2/156 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++  + V+Q +         +    ER  L        +               + +ILG
Sbjct: 551 LVRVYGVVQDISERKRTESQLRERDERLRLFFEAPLIGMALTTQSFGWEEVNQKLCSILG 610

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   +     +W    H +D    +  L+  +       + + R   AD Q  +  + +
Sbjct: 611 RSRDELMAS--SWHQLSHPDDLAGEQARLEEVLLGSSDGFEMDKRFLRADGQVVFTRLSL 668

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R +    G    ++ +  D + ++++          
Sbjct: 669 RAVRGGAGRQTLFLLLVEDTSARREAEARYHTLVEH 704



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/371 (10%), Positives = 99/371 (26%), Gaps = 31/371 (8%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYM-VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS 247
            L  GI + + +L+     +  +      ML      A+    Y ++     +  + L  
Sbjct: 204 LLAFGIFLALMALVGSLPLLVALPFLGIGMLALALRYAFAGALYGAVLVFAATLPLPLLR 263

Query: 248 GELLIWRACSE--------IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
           G+                 + L  + ++         +  ++   +          +   
Sbjct: 264 GDPGFAMLDLPRSQLQLAVLLLMGAALLVGRALGDLRQALSRSARMQQQLARANLAMEAS 323

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF-------- 351
                +  A    + L      +T    Y   +   R    + A     +          
Sbjct: 324 PLGVTIADARQPDLPLVYCNAAFTQITGYSADETLGRNCRFLVADDHAQLELQPLRSALR 383

Query: 352 -------IGLWMAITKRLDNDIIQPALV----GGLVLIVILIGFTVIQHVLATGYFSQG- 399
                  +        R   + +  A +    G    + +    T    + A     +  
Sbjct: 384 EGRSGHAVVRNYRKDGRPFWNEVVLAPMRDERGISHFVGLQQDVTERVELAAQVEQQRAQ 443

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +       S     +    W +++    +  +     I+              L Y    
Sbjct: 444 LLRQNHLFSQTEDIANLGGWVFELGDSSMFWSDGCYRIVERDIHLGPPSFEQALHYYDAP 503

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            +      L + +      +  E R+ A       + +R     + +G ++R  G+  DI
Sbjct: 504 SQTLIIETLQAAL-GGLDEVDVELRLAARLGG-RLVRVRGMAERDDDGSLVRVYGVVQDI 561

Query: 520 TEQKKSLEGIL 530
           +E+K++   + 
Sbjct: 562 SERKRTESQLR 572


>gi|284055164|ref|ZP_06385374.1| D-tyrosyl-tRNA(Tyr) deacylase [Arthrospira platensis str. Paraca]
          Length = 510

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 248/446 (55%), Gaps = 6/446 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I   +++   +L  A  D LTG+PNR  F+D+L   +  +  + + R  V+ +D D++
Sbjct: 62  REILHHQQTQSKLLHMASHDALTGLPNRVFFMDKLMQAISETKQNPDYRFAVLFLDCDRF 121

Query: 577 KKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           K +ND LG   GD +L+SL RR+   L   P  LAR  G+ F I+L + +++  +   A 
Sbjct: 122 KVVNDSLGHLTGDRLLISLARRLQLTLKMSPTNLARFGGDEFTILLENIHSTQAVTVIAE 181

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            ++K++  P  L E+++ + ASIG    TS      ++L++A++AMY AK +G      F
Sbjct: 182 RLQKALTWPFQLDEQDLFLEASIGIVIGTSEYTEPEQVLRDADIAMYKAKSQGRGCYRFF 241

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              + +    R  ++ DL LA+EN+   L Y PII L D  ++G EAL++W HP+ G IS
Sbjct: 242 DGTMHNDAHRRFQLENDLRLAIENNHFLLNYQPIIELQDGSVMGFEALLRWHHPEHGIIS 301

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCE 812
            +EF+ IAE+  +I  I L++L++  + +  W+ +  + P   + +N++ K      L E
Sbjct: 302 PAEFIPIAEDTGLIIPIGLWVLDQAVKQLNLWQKKGLITPQFRMSVNLSVKQFTQPYLIE 361

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ K  +  S +KL  +E+ ++ NPE +R LL +L    I L+LDDFGT  S LSY
Sbjct: 362 EIDRILVKNNFQSSYLKLEITETAIVENPEAARQLLQQLTHRNIHLSLDDFGTGYSSLSY 421

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K + S +T  G+  + + I+ +II +A  ++  ++A+ I     + +L  +
Sbjct: 422 LHRFPVNTLKIDRSFITCIGTPNENLQIVDAIITLAHQLKINVVAEGIETAEQLAKLRSL 481

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD  Q  + + P+       LLK+R
Sbjct: 482 GCDQGQGYYFSKPVESMMAEDLLKQR 507


>gi|308270640|emb|CBX27252.1| Uncharacterized signaling protein PA1727 [uncultured
           Desulfobacterium sp.]
          Length = 785

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 230/449 (51%), Gaps = 16/449 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+KK+ + I   A+ DNLT +PNR  F + +   ++ +    +    V++ID+D + +IN
Sbjct: 339 EKKKAEDRIHFLAYYDNLTNLPNRYFFKELVNKTIEYANRYKHT-FAVVIIDLDDFNRIN 397

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARL----------SGNRFGIILISENNSLKI 630
           D LG  VGD  L  ++ R+   L+  D +AR+           G+ F ++L   +N    
Sbjct: 398 DTLGHNVGDKFLKIVSSRLLNTLRSSDFVARIFDEEEPIARMGGDEFIVLLHELDNDGNC 457

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  +   ++    L   E+ +TASIG A +         ++KNA+ A+++AK RG N
Sbjct: 458 VHVAHRILNELSQAYELDGSEVFITASIGIAVYPDDGRDVENLIKNADTALHYAKKRGKN 517

Query: 691 HVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + + +   ++    + + ++ +L  A+E  E  L Y P + L   +I+G+EALI+W  P+
Sbjct: 518 NFQFYLKSMNETALELLTLETNLRRALERQEFLLYYQPKVDLTTRKIIGMEALIRWKTPE 577

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              IS ++F+ +AE   +I  I  F+L+        W++  +   I + IN++ +     
Sbjct: 578 GILISPAKFIPLAEANGLIVPIGKFVLQTGCLQNKKWQEACSKR-ISVAINVSGRQFGQK 636

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  + +  +I  T   P  ++L  +E+++M +P+R+   L +L+++GI + LDDFGT  S
Sbjct: 637 DFVQEVLTVIEDTKLDPQYLELEITETIIMTDPKRAVRDLEKLKEMGIQIALDDFGTGYS 696

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL  +P D +K + S +    +      I+++II MA N+   +IA+ +  E  ++ 
Sbjct: 697 SLNYLQRLPLDAMKIDISFIRNVVTDPNDAVIVKTIIAMAHNLNLKVIAEGVEDEHQLEF 756

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L   GCD IQ    + P+       LL  
Sbjct: 757 LREHGCDIIQGYLFSPPVPAEEFFDLLTR 785



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 47/169 (27%), Gaps = 6/169 (3%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              L     L++ ++    ++ +    +    +    +R       S D +   D    +
Sbjct: 23  TLLLSILSALMIYILVVRPMKTLSEFAHVETDLRESEKRYRRLFETSDDGIMILDFETGQ 82

Query: 428 VT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V    P +  + G       G     +   +  D       L       R        + 
Sbjct: 83  VKDVNPFLLNLFGAEREEFIGKEFPQIRCFNDFDIKGIE--LRELREKGRVHHDGMA-LE 139

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             D +            +  G          +IT++KK+ + ++  A Q
Sbjct: 140 TIDGRHVITEFIGNV--DQEGFQKVIQFNFRNITDRKKAEDELIDRARQ 186


>gi|253998882|ref|YP_003050945.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985561|gb|ACT50418.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 776

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 153/772 (19%), Positives = 289/772 (37%), Gaps = 49/772 (6%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV----NLPSGELLIW 253
                 +   + Y+     ++     +AW+    I          V     + +     W
Sbjct: 38  FVFAAIVASLLVYVQLD--VVPLAVCLAWMTFFLIVYGLRKALVWVYKRTPVHAYPPGFW 95

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
                       I +    +     H        +          +  Y      + A  
Sbjct: 96  LNWFRALSGLCGIAWGLSGIFLFYPHDTAHQAFLTLALAGVCGGAVMAYATDKPTAYAF- 154

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
                       +      G   ++L+    +L  ++       +  RL  +I+      
Sbjct: 155 ----AGGLILLGLPRFFWGGNHFSMLMAVNLLLFILYVTIASFKLANRLRENIV------ 204

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
                       ++ H        + I +  +RQ L +  +   V +WD+     +    
Sbjct: 205 ----------LRIMAH-----ESQEAINAMAQRQKLHIDHTPLAVIEWDVNFRVTSWNAA 249

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              I G       G   ++   I   D       + S + +  G   ++      D +  
Sbjct: 250 AEHIFGYPPSEAMGRHMSF---IVPPDGQMMAQDIMSKLTHEAGGQHWQHDNVRRDGRVI 306

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
                   + N    I+ +  +  D T  KK+ + I   A+ D LT +PNR+  ++RL+ 
Sbjct: 307 HCEWFNTAIKNDQNRIIGFASLIQDETAYKKAQDEIERLAYFDALTNLPNRRLLMERLSQ 366

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L+ S +   +   +M ID+D +K +ND  G A GD +L  +  R+   ++  D +AR+ 
Sbjct: 367 ALNNSRSSHRI-GGLMFIDLDNFKTLNDSRGHAFGDLLLKEVAARLLRAVRNHDTVARIG 425

Query: 614 GNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           G+ F ++L         A       A  +   I++P +L   +   +ASIG   +    +
Sbjct: 426 GDEFVLLLEDIGRDESAAIQTASQIAEKILADISLPFDLGNYKHQCSASIGICMFYRQGM 485

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
              E+LK A+ AMY  K  G N+   F  S          +K DL  A+   +  L Y P
Sbjct: 486 HVEEVLKRADAAMYETKRAGRNNYRFFDESMLPVIDSRASLKNDLRFALSLGQFELYYQP 545

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +        G E L++W HP+ G +   EF+ +AEE  MI  I  ++L++    +  W 
Sbjct: 546 QVDGEL-RTTGAEVLLRWHHPERGMVPPGEFIPLAEESGMIIPIGNWVLQQACMQLGKWS 604

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
             A    + + +N+++      +  E ++  + ++  +   + L  +ES+V+ N +    
Sbjct: 605 HHAKTSQLRLSVNVSAMQFGQADFVEQVRHALLESGCNEKLLVLELTESLVIQNIDDIVS 664

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-----KRIAILRS 901
            +  L+ IG+SL++DDFG   S LS L  +P D++K + S +    +         I+++
Sbjct: 665 KMQALKSIGVSLSMDDFGLGYSSLSLLLRLPLDSLKIDQSFVREIQDNAPKNDSAVIVQT 724

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+ M KN+   +IA+ I        L ++GC   Q      P   +     L
Sbjct: 725 IVAMGKNLGLDVIAEGIEEPYQQAFLEQVGCHAYQGYLYGRPSELSVFEHTL 776


>gi|120555164|ref|YP_959515.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120325013|gb|ABM19328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Marinobacter aquaeolei VT8]
          Length = 908

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 140/613 (22%), Positives = 270/613 (44%), Gaps = 13/613 (2%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           W +               +P +V G  L + L+ +  +  ++ +   +Q       R   
Sbjct: 298 WLLQTRSTPAFDYLAADPRPPIVLGSGLAISLLLWLFVLALIRSRLIAQ---VSAGRYRA 354

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
              G+ ++    D     +  +P    ILG     +      +   +H++D  + +   +
Sbjct: 355 ITEGAANVTLVMDRRGRPLYASPSSRDILGFDPDKVE--ALEFEKLVHMDDWSHLQRGFE 412

Query: 470 SFVGYRRGRLQYEF-RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             +     ++     RVR AD Q+  M      M +  G +   +    D+T+ K +   
Sbjct: 413 ESMASPGKQMPVVRARVRDADGQWRDMEGTFTAMLSVPG-VNGVVLSLRDLTQLKAAQSE 471

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   AF D LTG+ NRQ F DRL  ++  S         +M +D+D +K+IND LG   G
Sbjct: 472 LHRLAFYDPLTGLANRQLFRDRLNHVVRRSRRSGEA-AALMFLDLDGFKRINDTLGHDAG 530

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  + + +   ++  D +ARL G+ F ++L   + S      A  + + +   I L 
Sbjct: 531 DELLRQVAQWLEGCVREEDSVARLGGDEFVVLLSRISGSEAAGKVAENILRRLCQRIRLN 590

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
           + E+ VT SIG          +  ++K A+LAMY AK  G N  + F  +        + 
Sbjct: 591 DHEVGVTVSIGITMIPHDSEDAGALMKYADLAMYRAKELGRNTYQFFTPAMNIQAARRLL 650

Query: 709 E--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A++     L Y P + L  + ++G+EA ++W HP+ G +S+ +F+ +AEE  +
Sbjct: 651 QQEELATALDGDRFVLHYQPKVDLATQRVIGVEAFLRWHHPEKGLVSAQQFITLAEETGL 710

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +    L +    + +         + + +N + + L D+   + ++ +I++T  SP 
Sbjct: 711 IIRLGELALRQACIQVQALERA-GFESLKMAVNFSVRQLTDSGFLDMIRRVITETGVSPE 769

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L     ++  +P   R LL  L  +G+ L LDDFGT    L  L  +P D +K +  
Sbjct: 770 RLELEMPAELLNEDPRMLRELLVSLNDLGVCLILDDFGTGSCSLVALQQLPLDVIKIDHR 829

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           +  ++I +A  +  T++A+ +     +  L   GC   Q +  + PL
Sbjct: 830 FIRDIPYNVSATDVASAVIALAHKLHLTVVAEGVETLQQLTFLKSAGCAQCQGNLFSYPL 889

Query: 945 GFNSILKLLKERF 957
             ++++  L  ++
Sbjct: 890 DEDALIGFLIRQY 902


>gi|221067708|ref|ZP_03543813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220712731|gb|EED68099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 827

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 259/577 (44%), Gaps = 23/577 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL------GLAS 442
           +            ++    +     S D ++  D     V   P    +L      GLA+
Sbjct: 237 YSYRDITAESSSATELRLAARVFESSLDGIFIADAAGAIVQINPAGVQLLHGRSVLGLAA 296

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++       +  +     +      D          +    ++ +D Q   + +    +
Sbjct: 297 WALFESEGGPVSDL----LELASARWDV-----GSFWEGNLWLKQSDGQRCAVWLSWVAL 347

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +++ IG   D+T Q+ + + I   A+ D LTG+PNR S    +   +  +A   
Sbjct: 348 RDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI-TAARFT 406

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               +++ +D+D++K IND LG   GD VL  + +R+G LL+  D+L R  G+ F + L 
Sbjct: 407 QQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLGGLLRPADVLCRQGGDEFVLYLH 466

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                   +  A  + + +  P  L     +V  SIG A + +  +T  E+++ A++AMY
Sbjct: 467 DCTG-EGASAVAARILEEMRQPFMLDGLGFSVQCSIGAAQFPTDGLTLDELIRQADIAMY 525

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K RG  +   ++         R+ ++  +  A++   + + + P + +    IV  EA
Sbjct: 526 RVKERGRGNFSFYQPQMSAGLLSRMKLEHAMRQALDKGHMAVHFQPQVHIRTGRIVAAEA 585

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W  P+ G IS + F+ +AEE   + A++ ++LE+  ++   W       P+ + +N+
Sbjct: 586 LLRWTDPELGVISPAAFIPLAEESGYVVALDAWVLEQSVQEAARWLAMG--KPVKVSVNV 643

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +    +  + ++ ++  +      ++L  +ES+++   +   L + ++ ++G+ L +
Sbjct: 644 SALEFRQPDFVDRLKRVLEASGLPAQWLELELTESILLQEAQEMALRVHQIAELGVGLVI 703

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P   +K + S + G        AI+ +II M + +   ++A+ +
Sbjct: 704 DDFGTGYSSLAYLKKLPISKIKIDQSFVRGLPHDAGDKAIVGAIISMGQALGVELVAEGV 763

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +   + + ++  DY Q    +  L      K L++
Sbjct: 764 ETQEQCQAIEQLQGDYFQGYLCSPALPAEQFRKRLEQ 800


>gi|209521190|ref|ZP_03269914.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
 gi|209498362|gb|EDZ98493.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
          Length = 667

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 245/542 (45%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + GL    + G  R+       ++ D     + +    R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGLREEDIIG--RSVRTLFMSSNGDAVSNQVSADFFNRGEPYEI 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R++    +  ++       S +  +    I    DITEQ+ + + ++  A  D LTG+
Sbjct: 187 ERRIKTVHGERLFLFRNKFVRSGNGIEDQFLICSGTDITEQRLAQDRLIEQATTDPLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  +R+   ++ +A        V+ +D+D +K +ND  G   GD ++  ++  I  
Sbjct: 247 ANRNAIQERIQIAIEQAA--PGETVGVLFLDLDNFKTVNDHYGHVFGDRLICDVSDAIRN 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++ ++  + + A  +   + MP  +   E+    SIG A
Sbjct: 305 CLNPGDSLARLGGDEF-IVLATKGSADALENTAQRILDRMRMPFAVGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            W     +   ++++A+ AMY AK  G      F     R   + + +  +L   +E  +
Sbjct: 364 RWPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPDMNRRVAEFMWLDTNLRRGLEEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y P + L    + G EAL++W+ P+ G I  +EF+  AEE  +I  +  +++E  A
Sbjct: 424 FALHYQPKLNLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMETAA 483

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           +    W+       + + IN++++ L D  +       +      P  + L  +ES ++ 
Sbjct: 484 KQAARWKAAGYG--LRVAINLSARQLTDTAVVRHFTEALQHAGLDPCLVDLELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           N   +  L+ + R++G  + LDDFGT  S LS LG IP D +K + S +          A
Sbjct: 542 NEAAAIELIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDMIKLDRSFVRSIEADMKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ ++  ++A+ I  E +   + R+G DY+Q    A P+      + L +R 
Sbjct: 602 LVRSMVAVAQELDFQVVAEGIETEAEEAFMKRLGVDYVQGFLYAKPMPATEFERWLLDRR 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|302534564|ref|ZP_07286906.1| sensory box/GGDEF protein [Streptomyces sp. C]
 gi|302443459|gb|EFL15275.1| sensory box/GGDEF protein [Streptomyces sp. C]
          Length = 623

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/589 (22%), Positives = 267/589 (45%), Gaps = 26/589 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I+  L   + +  +  +      A   +   +       + +     +A +LG    ++
Sbjct: 26  SIRPALTERHPAVSVVPEPRDYRAAFDAAHLAMAVVGRSGEVIAANRALAALLGAEPHAL 85

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L  +               +  R+ RL+   R++  D    W  + + P++ +
Sbjct: 86  AGQCAADLVDLAAE--ARTWQAYQEVLRGRQARLRCTRRLKHPDGHSLWTEVTLGPVTGT 143

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDN 563
                  +    DI++++     +      D +T +PNR  F +RL+  L+ SA  T   
Sbjct: 144 PD----VLLSVADISDRRDLQARLRHLQMHDPVTRLPNRALFFERLSAALEASAYGTGGT 199

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLSGNR 616
            R  +  +D+D +K +ND LG  VGD +L ++  R+ +              +ARL G+ 
Sbjct: 200 GRIGLCYLDLDGFKAVNDTLGHRVGDRLLTAVAARLTQCADQSGYGRSGGHLVARLGGDE 259

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +++     + ++A+ A ++  ++  P +L  + ++V+ASIG     ++  +++ +++ 
Sbjct: 260 FALLVEDSTGTEQLAELARSVLAAVQEPFDLAGQRLSVSASIGVVERDAAGTSATGLMQA 319

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+  +Y AK  G      F             +   L  AVE  E  L Y P++ L    
Sbjct: 320 ADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSSLRPAVERGEFELEYQPLVDLESGV 379

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPP 793
           + G+EAL++W+HP++G ++ + F+ IAEE   I  +  ++L    R    W+ +Q +  P
Sbjct: 380 VRGVEALVRWNHPQFGMLTPNRFIGIAEEDGSIVQLGQWVLRTACRQARRWQVEQPSDSP 439

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N+A + + D++L   +  ++++T  +P  ++L  +ES VMG+  R    L  L  
Sbjct: 440 VFVSVNVAVRQVWDSDLVGDVAEILAETGLAPQLLQLELTESAVMGSAGRPLQALQALSD 499

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPM 905
           +G+ + +DDFGT  S L+YL  +P   +K +GS + G               I+ +++ +
Sbjct: 500 MGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRYEEGTHPNPADETIVEALVQL 559

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A  +  T+ A+ +        L R+GCD  Q    +  +    I +++ 
Sbjct: 560 AHRLGLTVTAECVETAGQAARLRRVGCDTGQGWLYSRAVAPERIAEMIA 608


>gi|83311792|ref|YP_422056.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82946633|dbj|BAE51497.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 548

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 251/550 (45%), Gaps = 22/550 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D V   D   + + + P   T++G  S       R     I+            +
Sbjct: 12  LDSINDAVIIADGDGNPLRSNPAFETLMGFTSKGGAEVSRLAAGMIY-----------RA 60

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 GR +    V   D +     +    ++ S     RY+ +      ++    G  
Sbjct: 61  INPGAGGRWRG--LVTCPDGRERPFEVTAAAINPSTDSADRYLCVVRPAIAEEAGAAGGS 118

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D LTG+PNR  F DR+   +  +         +M + +D++  +ND LG   GD 
Sbjct: 119 FG--YDTLTGLPNRDLFGDRIGQAVLQANRT-GASVALMTMGLDRFTLVNDALGHGAGDR 175

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L+ + RR+   ++  D   RL G++F  ++++  ++      A     ++  P  L  +
Sbjct: 176 LLMEVARRLKMCVRETDTAVRLDGDKFA-LVMAIADTDDSVIVAEKALNAVKEPFALDGQ 234

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIK 708
           E+ VT SIG + +     +S++++K+AE A+++AK  G N  + F   ++     R+ ++
Sbjct: 235 EVVVTFSIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSKDMNRKAKSRLELE 294

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ N E  + Y P +    + IVG EALI+W  P+ G +   EF+ +AEE   I+
Sbjct: 295 GRMRRALANQEFVVFYQPKVSADRDAIVGAEALIRWMDPERGMVPPGEFIPVAEESGQIE 354

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L +       W++     PI + +N++++      L + +  ++  T   P  +
Sbjct: 355 PIGTWVLRQSCIQNRLWQEAGFN-PIKVSVNVSARQFRSPSLLQTVTEVLDSTGLDPKWL 413

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES++M + + +   +  LR +GI L++DDFGT  S LSYLG  P  T+K + + +
Sbjct: 414 ELEITESMLMNDVDTAVRKMKALRDLGIGLSIDDFGTGYSSLSYLGRFPITTLKIDRAFI 473

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  K   I R+II +++ +   ++A+       I  L   GCD +Q  + + P+  
Sbjct: 474 ADVDTNPKTAEIARAIIGLSRGLNLEVVAEGAEIAEHIMFLRNNGCDTVQGFYYSRPVPA 533

Query: 947 NSILKLLKER 956
           +   +++ +R
Sbjct: 534 DEFERMMGQR 543


>gi|91775260|ref|YP_545016.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91775404|ref|YP_545160.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91709247|gb|ABE49175.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91709391|gb|ABE49319.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
          Length = 633

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 222/434 (51%), Gaps = 7/434 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E     A  D +T +PNR +F      +L+ +     +   ++V D+D +K IND L
Sbjct: 188 KAEERAGFLANYDTVTDLPNRHAFSRHFHLLLEGARHRRGV-LALLVFDLDDFKVINDTL 246

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  + +R+       + + R+ G+ F ++L    +   +   A    +++A 
Sbjct: 247 GHDVGDKLLHLVAQRLMVAAGKKNTVYRVGGDEFAMMLDQPADVENVEAVANRFIRALAP 306

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
           PI L +R   +  SIG + +      ++ +L++A+ AMY+AK RG N+ + F   +    
Sbjct: 307 PIVLNDRNFYIGVSIGASIYPYDGEDAAHLLRDADAAMYYAKSRGKNNFQMFSAEMHHKS 366

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S R++++ +L +A+E  +  L Y P   L D ++VG+EALI+W HP+ G +  S F+ +A
Sbjct: 367 STRLLLETELRVALEEKQFELYYQPQFSLPDCKLVGVEALIRWHHPQRGLLCPSSFIPVA 426

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  ++L    R  + W+      P+ + +N++ +      L + M  +I +T
Sbjct: 427 EETGLIVRIGEWVLREACRQAMEWKALG--VPLRMSVNLSGRQFRQENLVQTMTKIIERT 484

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S ++L  +E+V+M + E +   L  L+ +G+ L +DDFGT  S ++YL   P   +
Sbjct: 485 GMDSSLLELEITETVLMEDAEATTTRLADLKAMGMHLAIDDFGTGYSSMAYLKRFPVSRL 544

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +         +AI  + I MA +++  ++A+ +  +  ++ L   G D +Q   
Sbjct: 545 KIDRSFIRDIPNDPDDVAITTATIQMAHSLKLEVVAEGVETKAQLQFLREQGSDMVQGYL 604

Query: 940 VASPLGFNSILKLL 953
            + P+    + +L+
Sbjct: 605 FSRPVSAREMAELV 618


>gi|228968479|ref|ZP_04129467.1| Sensory box protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791185|gb|EEM38799.1| Sensory box protein [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 586

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 145/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 29  ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 86

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      +   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 87  KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 143

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    VM +D+D++KK
Sbjct: 144 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKVILNTAQTNAN-DVAVMFLDLDRFKK 202

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ +  R+   L+  D++AR  G+ F I+L    +       A  + 
Sbjct: 203 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 262

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 263 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 322

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E +L Y P +    +EI+G EALI+W HPK G +S ++
Sbjct: 323 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 382

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 383 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISM 441

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 442 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 501

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+
Sbjct: 502 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 561

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 562 IQGFFISKPVSSKDVWMLLHKK 583


>gi|300312026|ref|YP_003776118.1| signal transduction protein containing a membrane domain, an EAL and
            a GGDEF domain-containing protein [Herbaspirillum
            seropedicae SmR1]
 gi|300074811|gb|ADJ64210.1| signal transduction protein containing a membrane domain, an EAL and
            a GGDEF domain protein [Herbaspirillum seropedicae SmR1]
          Length = 1106

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 228/441 (51%), Gaps = 6/441 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E +++ E I   A  D LTG+PNR      ++  +  +   + +   V+++D+D++K IN
Sbjct: 658  ESRRADERIRHLAHYDELTGLPNRFLCTQHVSNAITHAEHRNGM-VAVILMDLDRFKNIN 716

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G   G+ VL  + +R    L+  DILAR+ G+ F +++   ++ +++ + A  +   
Sbjct: 717  DTFGHETGEAVLQEIAQRFRNSLRELDILARVGGDEFIVLVDDFDDPVQLGEIAQKLLTE 776

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               P  +  +E  ++ SIG A++      +  ++KNA++AMY AKH G +    F     
Sbjct: 777  ARKPFIIDGQEAMLSVSIGIATYPGDGDNAQTLIKNADIAMYRAKHHGKDDYRFFSDEIN 836

Query: 701  RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +   R+ ++ +L  A+E +E  + Y P I L +  IVG EAL++W HP  G +   EF+
Sbjct: 837  TNTVERIALEAELRRAIERAEFVVHYQPKIELAEGRIVGAEALVRWQHPLRGLLPPGEFI 896

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             +AEE  +I  I L +L+   RDI   R Q  M    I IN+      D  L + ++ ++
Sbjct: 897  TLAEETRLIDQIGLLVLDVACRDIGLMRQQQ-MTCGRISINLTGSQFGDERLLDDIKEVV 955

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +    PS ++   +ES+VM N ER+  ++  +R  G ++++DDFGT  S L+YL   P 
Sbjct: 956  DRHGTPPSCLEFEITESMVMHNRERAIAIMDGIRAEGFTISIDDFGTGYSSLAYLKRFPV 1015

Query: 879  DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            +T+K + S +          AI+++II M+  +   ++ + +  E  ++ L   G D  Q
Sbjct: 1016 NTLKIDKSFINDIPDNPNSSAIVQAIIAMSHALNLKVVTEGVETEKQLQALREFGSDEYQ 1075

Query: 937  DSHVASPLGFNSILKLLKERF 957
              + + P+ +   ++LL  + 
Sbjct: 1076 GYYFSKPVPYAQFVQLLAGQQ 1096



 Score = 39.5 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/187 (7%), Positives = 50/187 (26%), Gaps = 10/187 (5%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W L+ ++   +   +         +  L  G++  +++   + + +          + + 
Sbjct: 317 WSLVAVYARRMNDVLAPWRSRTENRILLTTGILGFILIALISFLVYYRYQRRLDHALSAS 376

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPY---IHIN 459
             R         D +         +          G+     + G            H  
Sbjct: 377 EYRYRKLYEEGNDPIVLISAELRYLDCNAAALRFFGVPDKERIIGRKVGLFSRQKSRH-M 435

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           ++ +   ++   +  +  + ++    R        +   +               I  DI
Sbjct: 436 EQPDIDELVARVLSGQPQQFEWVTVRRNK-----IIHTDVTLNRAEFERGYAIFAILRDI 490

Query: 520 TEQKKSL 526
           + +K++ 
Sbjct: 491 SARKRAE 497


>gi|226303624|ref|YP_002763582.1| hypothetical protein RER_01350 [Rhodococcus erythropolis PR4]
 gi|226182739|dbj|BAH30843.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 796

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 157/756 (20%), Positives = 320/756 (42%), Gaps = 25/756 (3%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           + +R    + T A    V  + S        +        LIW A +   + +S+ ++L 
Sbjct: 43  LFSRQVRQVTTVAPLANVANFFSACALLAYVVPPAHEEFRLIWGAAALAVILNSVRVWLP 102

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA--SIVLYYTYFIIY 328
             +   R+  K           + ++     Y  +    +  I  +   +++     ++ 
Sbjct: 103 RAIQGERYSPKHTTRYDYWALMLEVVLLGVLYTILAAEMLPVIDGSRKLVLIATIAGVVG 162

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
            G         L  AW ++      L++ +        +    +   + I+ +    +  
Sbjct: 163 AGAVALSTVRSLGLAW-ILVHGLGLLFVMLAGATAEYFVLSFQLVVYISILCVGVVYLWA 221

Query: 389 HVLATGYFSQGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +         ++ +  SL +     GS D +W+ D       T+  ++ I G++   
Sbjct: 222 SFRSRCLAEFEAAAERQTVSLLLDDFEGGSRDWLWEADTTGTLSHTSARLSQISGVSVSD 281

Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +    +R  L  + +    + R  +     +  R    +             W  +   P
Sbjct: 282 LRTLSLRGLLDRLDVGSTKSGRAAVHVIGDHLDRLMPFREVVIPVRVGGVDRWWSLSGHP 341

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             +   + + + G+ +DITE+      IL  A  D LTG+PNR++F   L+  L    T 
Sbjct: 342 RLSEAMEFVGWRGVGSDITEKYNYERRILWLAATDGLTGLPNRRTFGTELSDALGAVRTG 401

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           + +   ++  D+D +K +ND LG  VGD +L+S+  R+  ++    + AR+ G+ FG++L
Sbjct: 402 EQVLVGIL--DLDNFKSVNDTLGHPVGDKLLISVAARLNRVV-DGAMCARIGGDEFGVVL 458

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +  ++         ++  P  +    I V ASIG+AS  +    +  ++ +A+LA+
Sbjct: 459 RGTGDGGEVFA---RYLGALREPFFVRGNRIEVRASIGYASSPADSEDADTLVMSADLAL 515

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N V  +  +     R      ++L LA+E+ +  L Y P +R     + G E
Sbjct: 516 YAAKSAGKNRVGKYSPALRARARERASALQELGLAIESRQFELYYQPQVRADTGRVEGFE 575

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G ++   F+ +AEE  +I  + L +L     + ++W D       ++ +N
Sbjct: 576 ALLRWNHPVRGVLAPRIFIDVAEETGLIVPLGLQVLHMACAEAMTWPD-----DTYVTVN 630

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   L+ +     +   +  +  S  R++L  +E+  +   E +   L RLR  GI++ 
Sbjct: 631 VSPVQLMSSGFGSAVNDALEASGLSSKRLQLEITETGAVE--ELAVAELDRLRATGIAIA 688

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           LDDFGT  S    L  +P D +K + S +T  +E   A++ S++ +AK +    +A+ + 
Sbjct: 689 LDDFGTGYSSFESLKKLPLDILKIDRSFITELSEGDSAVVTSVVEVAKALGMQSLAEGVE 748

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L   GC+ +Q  +++ P+    + + L  
Sbjct: 749 TADQLRLLLTAGCELVQGYYISRPMPATEVAEYLSA 784


>gi|241764427|ref|ZP_04762451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax delafieldii 2AN]
 gi|241366169|gb|EER60746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax delafieldii 2AN]
          Length = 1051

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 129/588 (21%), Positives = 252/588 (42%), Gaps = 25/588 (4%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               V+Q + A       +  +  RQ   +      V                  I G + 
Sbjct: 465  HIAVVQDISARKQMEASLRGNELRQRSILQRLPVGVCLVQDDGRMTFRNARFVEICGYSQ 524

Query: 443  GSMHGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
              +     +W   ++ +       R  +     S           E+ +R  + Q   + 
Sbjct: 525  DDL-PTSEDWWRAVYPDPEYRERTRAAWAAACASAREGSGTIASGEYTIRCKNGQQRVVE 583

Query: 497  IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            I    M +       ++    D++++K   E I   AF D LT +PNR+  +DRL   L 
Sbjct: 584  IAGVTMDD------GHLVTMVDLSQRKADEEEIRYLAFYDPLTRLPNRRLLMDRLQQALA 637

Query: 557  LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             SA        ++++D+D +K +N+  G   GD +L  + +R+ + +   D +AR  G+ 
Sbjct: 638  TSARHQR-SGALLLLDLDNFKTLNETRGHERGDLLLQQVAQRLRQCVHEDDTVARPGGDE 696

Query: 617  FGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            F ++L    +     + +  +    +  ++  P  L       + S+G   ++  + T  
Sbjct: 697  FVVVLEDLGDNPEEAAARSEEIGQKILAALREPYQLDAEVHHSSLSMGITIFSGMRETVD 756

Query: 672  EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            E+LK A+LAMY AK  G + +  +      +      ++ D+ + +   +  L Y P I 
Sbjct: 757  ELLKRADLAMYQAKGAGRDTLRFYDPRMQAAVSARAAMELDMRVGLAQGQFELYYQPQI- 815

Query: 730  LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                 I G EAL++W HP+ G IS ++F+ +AEE  +I  +  ++L+   R +  W  Q 
Sbjct: 816  -EHGRITGAEALLRWRHPQQGFISPAQFIPMAEESGLILPLGEWVLQAACRRLAQWSQQP 874

Query: 790  NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             +  + + +N++ +          + A ++ +     R+KL  +E +++ + E +   +G
Sbjct: 875  GLAELDLAVNVSPRQFHQGGFVPQVLAALAGSGADGHRLKLELTEGLLLEDVEDTIEKMG 934

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
            +LR  G+  +LDDFGT  S L+YL  +P D +K + S +    +     AI R+++ +A 
Sbjct: 935  QLRGYGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDQSFVRDVLTDPNDAAIARTVVALAT 994

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++   +IA+ +  E   + L R  C   Q   ++ PL       L++ 
Sbjct: 995  SLGLRVIAEGVETEAQREFLARSHCHAWQGFLLSPPLAVAEFEALVRR 1042



 Score = 75.8 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 35/133 (26%), Gaps = 3/133 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                 ER       +   V   D    R V        I+G     M     ++    H
Sbjct: 353 ARRQSEERFRAVFNQAAVGVAQIDTQTGRFVRVNQKYGDIVGYTVEQMGQ--LSFQAISH 410

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D       ++            E R    D    W+ + +  M         +I +  
Sbjct: 411 PADLVEDLARMERLKAGEITEYHMEKRYFHRDGHTLWVDLAVSAMWAPGAQPDYHIAVVQ 470

Query: 518 DITEQKKSLEGIL 530
           DI+ +K+    + 
Sbjct: 471 DISARKQMEASLR 483


>gi|225872418|ref|YP_002753873.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794342|gb|ACO34432.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 806

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 155/804 (19%), Positives = 325/804 (40%), Gaps = 34/804 (4%)

Query: 169 NLPQIYLWEPN------FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           ++P+I  W          +   +    +    ++GV++LL    +   + +  ++  P  
Sbjct: 26  SMPRIRYWTLGWIFVLLHFTAQIAVQDVAWQSVLGVSALLLAGCSFL-IASSDAIHDPGE 84

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
           AM    L  +         +  + +  +L+  A                Y+    W A  
Sbjct: 85  AMIAASLLGVPPIAYLCLTVYGVSTVPVLVAVALVGQLCMI--------YVSLRYWGADR 136

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
           G +  + +  + I+    +    + A  A + +   +        +   + + RA   + 
Sbjct: 137 GIVRGNMVIALLIML---WIVYEIRAGQAILGVYGTLTEIFAINAWFYWRDFRRASAGVL 193

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
             +L  + +  ++ A                   +    + F +I  +L      Q    
Sbjct: 194 TAVLGLLAWALVFPAALVVAAWWPHLHVSSELWNIPKYFVEFGMILTLLEEEI--QAANR 251

Query: 403 DGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
             E   +    +   +W +D+     +        + G +           +      + 
Sbjct: 252 TSEDYRVLFENNPSPMWIYDLETLRFLRVNDAAQHVYGYSEEEF--RQMTLMDIRPQEEV 309

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                  D  +          +     D +   + +    +   NG + R+  +  ++TE
Sbjct: 310 PRMLE--DVGLEREEMVFSGPWTHVYKDGRQSKVEVAAHTIHF-NGRMARFCLVV-NVTE 365

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +++  + +L  A  D LTG+PNR    DR+   L  ++  D  R   + ID+D++K+IND
Sbjct: 366 REELHQQLLYQAHHDLLTGLPNRLLLKDRMQQTLTRASRQDR-RVAFVCIDLDRFKQIND 424

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD  L  +  R+   L+  D +AR  G  F  +L    +       A  +    
Sbjct: 425 NYGHLVGDQCLKLVAERLRRRLRGEDTIARSGGEEFVAVLGELKSRQDAYRVAEDLLYVF 484

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSS 699
             P  +    + + ASIG A +      +S++ +NA++AMY +K  G       S  +SS
Sbjct: 485 HEPFLVEGYRLELPASIGVALYPDDGTDASDLWRNADIAMYRSKKSGGNRFTFVSDEISS 544

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++   ++  +  A++     + Y P   L D  + G+EAL++  HP+ G I    F+ 
Sbjct: 545 AAAEANDLELMMRTALKEGGFEVYYQPQY-LEDGTLCGMEALLRLHHPRSGMILPDRFIP 603

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  ++LE +AR  ++W  QA +P + I +N++    + ++    +Q +++
Sbjct: 604 VAEDSGLIMPIGNWVLEEVARQFMAW-SQAGLPQVRIAVNVSPLQFMHSDFLGHVQRVLA 662

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++      ++L  +E+ VM N E     +  L  +G+  ++DDFGT  S L +L  +P  
Sbjct: 663 RSGMPAELLELEVTETTVMRNIEEIARQMRELAALGVHFSVDDFGTGYSSLRHLHQLPIK 722

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S +   TE     +I+++I+ +A ++   ++A+ +  +   + L  + CD  Q 
Sbjct: 723 TLKVDRSFVERITETNGTYSIVQAILSLAHSLGMQVVAEGVERKDQFEVLKALQCDVFQG 782

Query: 938 SHVASPLGFNSILKLLKERFPLVK 961
              + PL   +I  LL+ +   ++
Sbjct: 783 YLFSYPLEAGAIPPLLETQTAGIR 806


>gi|254785192|ref|YP_003072620.1| eal and ggdef domain containing protein [Teredinibacter turnerae
           T7901]
 gi|237685815|gb|ACR13079.1| eal and ggdef domain containing protein [Teredinibacter turnerae
           T7901]
          Length = 709

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/611 (23%), Positives = 264/611 (43%), Gaps = 27/611 (4%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
               D I      G V  V+L+    I  +  +    + +     R    +  S D +W 
Sbjct: 98  WFSVDKIPTLNKLGEVTGVMLV----INDISESVVKERALEESDARYKAFIANSADAIWC 153

Query: 421 WDI-VRDRVTTTPD--IATILGLAS-GSMHGPIRNWLPYIHINDRDNF----------RT 466
           +++      T +P   +  IL  A     +  +  +    H  D                
Sbjct: 154 YEVYPPVDTTLSPQLQVEQILKRAILVECNETLARFFGVTHTRDVIGLPLSRSGSLSSYQ 213

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + +F+         EF          +M      +   NG ++R  GI  DIT+Q+   
Sbjct: 214 DVRAFIDNGYRLENKEFSRVDRTGMCGYMQSSAIGVV-ENGLLMRAWGITRDITDQRTHT 272

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  D+LT +PNR      +   +  +  D      +M+ID+D++K+IND LG  
Sbjct: 273 DRMEYLANHDSLTLLPNRTLLYSTMEQTIANAKNDQ--LMALMIIDLDRFKEINDTLGHR 330

Query: 587 VGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            GD VL  +  R+   +     ++ARL G+ F + L    N+ +          S+  P 
Sbjct: 331 AGDSVLQQVGPRLEGEMVELEGLVARLGGDEFAVFLPRVRNAHQALVLGHRFIDSLGEPF 390

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDR 704
            +      VTASIG + +       S +++ A++AMYHAK    G  V           R
Sbjct: 391 EIETFRTEVTASIGISMFPDQGRDVSTLMRYADVAMYHAKRALKGVAVYDPEFDPHSPTR 450

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + I   L  A+  S+L L + P I L+   + G E L++W HP+ G +   +F+ I E+ 
Sbjct: 451 LEIMGALRRAIRESQLELYFQPKIDLLTHRVTGFEGLLRWHHPEIGTVPPVDFIPIVEKS 510

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++    R    WR + +   I + +N+++ ++ D  L   ++ L+++    
Sbjct: 511 NLIYPLTCWVMAESIRQCAIWRREGHD--ITVAMNLSASNVTDERLLAELRQLLTQYDLP 568

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +++  +ES +M +PER+   L ++  +G+ L++DDFGT  S L+YL  +P  T+K +
Sbjct: 569 GHCLEMELTESTIMNDPERALTALKKIAALGVHLSIDDFGTGYSSLAYLKRLPVGTLKID 628

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +      E+   I+ S I +A N+  +++A+ +  +   + L    CD  Q   +A 
Sbjct: 629 KSFVMDMLIDEQDEIIVNSTINLAHNLGLSVVAEGVESQEIYQRLQDHKCDSAQGFLIAR 688

Query: 943 PLGFNSILKLL 953
           P+      + L
Sbjct: 689 PMPAADATRWL 699


>gi|303249428|ref|ZP_07335649.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302489170|gb|EFL49141.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 728

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 147/585 (25%), Positives = 255/585 (43%), Gaps = 29/585 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQS----------LAVLGSG-DIVWDWDIVRDRVTTTPD 433
           T ++  +      Q +    +R            L +  S  D   D       +   P 
Sbjct: 146 TAVEVAIFKHRTEQKLKRSEQRYRHLFSGMLNAFLLLELSPCDACADGRGALRILEANPS 205

Query: 434 IATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
              + GL    +         P I           LD+     R      F    AD   
Sbjct: 206 FERMTGLCRSEVIDRALTEVFPGIEP-------FWLDTLGETARSGRSVRFENSLADCDM 258

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            ++     P S           +  D+TE+K   E +   +F D LTG+PNR   LDR+ 
Sbjct: 259 FFLAQAYSPQSGQ------VAVVLEDVTERKSGEERLRYQSFHDALTGLPNRALCLDRIA 312

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             ++ +    N    ++ +DID+++ +ND LG   GD++L  +  R+   +   D +AR+
Sbjct: 313 RAIERARRRSNYLYALLFLDIDRFRLVNDSLGHLFGDELLKRVGERLRHEVPQLDTVARV 372

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F +++     S        A+R+    P  + +R+  VTAS+G     +      E
Sbjct: 373 GGDEFVLLVEEIAASADALHIVKAVRERFRTPFVIAKRQFYVTASMGVVLGPADYERPEE 432

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +++NA +AM  A+  G   V  F  S  +     + ++ +L LA+++ E  L Y PI  L
Sbjct: 433 LMQNAAIAMNEARKSGWGRVRVFEWSMRQRAERVMDLETNLRLALDHREFILHYQPIFDL 492

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
                 G+EAL++W  P    +   EF+  AE+  +I  +   +L    R +   R    
Sbjct: 493 KTLAPCGVEALVRWRRPTGELVPPDEFIPAAEQSGLIIPLGAMVLAEACRAMGRLRRGGL 552

Query: 791 MP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              P F+ +N++++     EL + +   +     +P  +KL  +ESV+M +PE + L L 
Sbjct: 553 GGNPFFMSVNLSARQFTQPELVKQVVRTLRDERMAPGDLKLEITESVLMEHPESAMLKLR 612

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKN 908
            LR+ G+ + +DDFGT  S L+YL   P DT+K +   ++G  E     I+RSII +A +
Sbjct: 613 GLREFGVGIGIDDFGTGYSSLAYLQRFPIDTLKVDRGFVSGMDEYGNRVIVRSIIGLAHS 672

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   ++A+ I  E  +++L  +GCD  Q    A P+   ++   L
Sbjct: 673 LGCDVVAEGIETESQLRDLAGLGCDLGQGFFYARPMDEAALTSFL 717


>gi|95930120|ref|ZP_01312859.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133814|gb|EAT15474.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 814

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 133/442 (30%), Positives = 230/442 (52%), Gaps = 5/442 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S + +   A  D LTG+ NR   LDRL   ++      +    V++ID+D+++ IND L
Sbjct: 367 QSEQRLEHLATHDELTGLANRTLLLDRLDHAIEEGMRQHHA-VAVLLIDLDRFQVINDSL 425

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  + +R+ + ++  D ++RL G+ F ++L   NN   +      + K I+ 
Sbjct: 426 GHDQGDRLLCQIGKRLCQHVRSTDTVSRLGGDEFALVLGDLNNEESLIPLMQDLLKEISS 485

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRS 702
           P ++    I VTASIG + + +    S  +L+NA+LAMY +K   G     S  ++    
Sbjct: 486 PCHIDNHHIVVTASIGISLFPNDGNDSITLLRNADLAMYQSKRHKGDFTFYSSDMNQHAV 545

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + +++DL  A+E  EL L Y P + L   +IVG EALI+W HP  G +S ++F+ +AE
Sbjct: 546 KILELEKDLRQALERGELLLHYQPKVSLQSGKIVGCEALIRWQHPLRGLVSPADFIPLAE 605

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++LE+  +  IS   Q  +P I + +N++S+      LC+ +  ++  T 
Sbjct: 606 ETGLIVPIGTWVLEQACQQAIS-WQQQQLPTITMAVNLSSRQFRHGNLCDVVDTILETTT 664

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +ES++M +PE +   +  L++ G+ L+LDDFGT  S L+YL   P D +K
Sbjct: 665 LHPDLLDLEITESMIMDDPEGAVQTMIALKERGVLLSLDDFGTGYSSLNYLRRFPVDCLK 724

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    +     A+  SI+ +A ++  T +A+ +     +  L +  CD +Q    
Sbjct: 725 IDASFIRDVAQDSSSAAVAVSIVDIAHHLGLTTVAEGVETVEQLDFLEKCHCDILQGYLY 784

Query: 941 ASPLGFNSILKLLKERFPLVKN 962
           + PL       LL+    L + 
Sbjct: 785 SRPLPAEDFTSLLRSNLDLKQT 806


>gi|115524460|ref|YP_781371.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518407|gb|ABJ06391.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 779

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/629 (24%), Positives = 287/629 (45%), Gaps = 20/629 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            A     +   GL M     +   ++   ++   +  +      + +   A    +Q + 
Sbjct: 142 LARETGLVALFGLLMGGVTYVAFRLLPLRIIDRTLKDLKTASRLIQRKNEALETQNQALQ 201

Query: 402 SDGERQ---------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           +  +           +  + G GD  W + I    +  + ++  +L     S      + 
Sbjct: 202 ATKDALKNRSDQLIEAQLLGGIGD--WSYRIGESTIDWSAELFALLRFDRESYSCDRDDI 259

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           +     +            V  R  +   + + R  D      ++  +   +S+G ++ +
Sbjct: 260 ISRYVGDSAKRVLQAQADIVRTREVQ-TIDVKFRRGDGTVGDFVVVSKAAIDSDGALIGF 318

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            G   DITE+K++ E +   A+ D LTG+PNR  F  +    L+           VM++D
Sbjct: 319 KGTIQDITERKQAEEQLQKLAYYDPLTGLPNRSLFRRKAEDALERY-LHGGGEAAVMLLD 377

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K++ND LG A GD++L  +   I  +L    +LARL G+ FGII+       +I  
Sbjct: 378 LDRFKEVNDSLGHAAGDELLDKVAHVISRVLGNRHLLARLGGDEFGIIVTDALGRAEIEA 437

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +++ PI L   E+ +  S+G A       T S++L+NA+LA+Y AK  G    
Sbjct: 438 LARDIITAVSEPIALSRGEVAIGTSVGIAGIPRDGDTISDLLRNADLALYRAKEAGRGRF 497

Query: 693 ESFRVSS--FRSDRVMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           + F          ++M+  DL  A+ ENS L + + P + ++  ++VG EAL++W HP  
Sbjct: 498 QFFEEDMSTTVQHKLMLGRDLRRAITENSGLSVHFQPQVDILSNKVVGFEALMRWTHPSL 557

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           GN+S  EF+ IAE   +I  + L++L   A+   +W D     P  + +N+++  +   +
Sbjct: 558 GNVSPDEFIPIAESSHLICDLGLWILRESAKQAKAWIDA-GETPRQVAVNVSASQIWHTD 616

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCS 868
               +  ++ +T   P  + L  +ES+++ + E R R +L  L++ G+ L LDDFGT  S
Sbjct: 617 FVNDVIGVLRETALPPHLLCLELTESLLVDHAEGRVRKVLMELKRAGVVLALDDFGTDYS 676

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +PFD +K +   + G  +      +L+ I+ + + +   ++ + +    ++  
Sbjct: 677 SLGYLVQLPFDKLKIDRIFINGIADSDRVRNLLQGIVALGRGLRMQVVMEGVERAEELDI 736

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +GCD +Q    A P      L + +E
Sbjct: 737 IRTLGCDVVQGYIFARPSSAAGALAIARE 765


>gi|253574406|ref|ZP_04851747.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846111|gb|EES74118.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 575

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 120/560 (21%), Positives = 249/560 (44%), Gaps = 17/560 (3%)

Query: 407 QSLAVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
              A+   G  +   +        V        I G     +      +L          
Sbjct: 21  LLQAIDRMGVGLAITNPNLPDNPLVYVNQGFEKITGYKREEVLNRNLRFLQG--KETNKE 78

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--- 520
              ++   +    G      +    D    W    I P+ ++ G +L +IG+  D+T   
Sbjct: 79  HLAVIRKAIKE-IGAATVTIKNYKKDGSTFWNQFVISPILDAEGHLLYFIGLQFDVTREV 137

Query: 521 -EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            +Q+ S E +   +  D  T + +   F + +   L LSA  ++    V+ I++++++ I
Sbjct: 138 EKQQASTEQLRQLSHFDPATHLMSSNYFKELMYAEL-LSAQAEHTTAAVICINLNRFRLI 196

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+  G + G+++L  +  R+         + R   + F +++ +  + L I   A+ + +
Sbjct: 197 NESHGESKGNELLRQVAERLRRSFPDGTPMCRNFADEFFVLVSNITDPLYIHTLALDLNQ 256

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRV 697
           ++  P  L      V   +G + +        ++L++AE+AM  AK     G H     +
Sbjct: 257 ALREPYTLSGEAFQVGFGMGISLYPDDGSDIHQLLQHAEMAMKEAKKEALEGPHYYDQYL 316

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++ +++ +  A+   E  L + P +    +E+ G EALI+W  P  G I  + F
Sbjct: 317 MDRLKTQITLEKKMIRALAEGEFELHFQPKVNASTKELTGFEALIRWKDPVQGYIPPNSF 376

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE   I  +  ++L    +    W+D    P + + +N+++      +    ++ +
Sbjct: 377 IPIAEENGFIVELGEWVLREACKANKRWQDA-GHPKLPVSVNVSAVQFRHPQFLRTVEQV 435

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++T  +P  ++L  +ES ++ +    +  L  L++ GISL++DDFGT  S + YL  +P
Sbjct: 436 LNETGLAPQYLELEVTES-LLNDHVMIKDTLTALQQKGISLSVDDFGTGYSSIHYLKSLP 494

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + + +  +  +E+  ++LRSII + K++  T++A+ +  +   + L + GCD I
Sbjct: 495 VQVLKIDRTFVQETPCSERDNSLLRSIIQLGKSLGMTVLAEGVETKAQFEFLQQNGCDQI 554

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + PL   +I  LLK 
Sbjct: 555 QGYYYSRPLNAEAIEGLLKS 574


>gi|218438864|ref|YP_002377193.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 7424]
 gi|218171592|gb|ACK70325.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 7424]
          Length = 865

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 138/431 (32%), Positives = 230/431 (53%), Gaps = 9/431 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D+LT +PNR+ F+ +L  +      D++    V  +DID++K IN+ LG   GD VL+
Sbjct: 426 YYDSLTYLPNRRFFVSQLQKMNKHQKADNSELTAVYFLDIDRFKVINEGLGHEAGDFVLL 485

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              +R+   L     LAR+ G+ F I L S  +  +  + A  +++ +  P     +EI 
Sbjct: 486 ETAQRLQGQLNNKAQLARVGGDEFAIWLNSLVSIDEATEIANYLQQILNQPFFWKGQEIY 545

Query: 654 VTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKED 710
            + SIG A   +     S E+L++A +AMY AK+ G  H E F   +     +R+ I+ D
Sbjct: 546 TSVSIGIAFNRTGAKFNSEELLRDANIAMYQAKNSGKVHYEMFASGMREQVINRLQIETD 605

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  +++  E  L Y PII L   +I G+EAL++W   K G IS  EF+ IAEE  +I  +
Sbjct: 606 LRRSIKQQEFQLFYQPIISLKTGKIAGVEALVRWKSVKRGFISPGEFIPIAEETGLIIPL 665

Query: 771 NLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L+     +  W  Q +  PP+FI +N++ +      L + +Q ++       + +K
Sbjct: 666 GEWILQEACSQMRQWHQQFSQNPPLFISVNLSGRQFSQPNLVQQVQYILETINLERNTLK 725

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++M + E +  LL RL+ +G+ L++DDFGT  S LSYL   P DT+K + S + 
Sbjct: 726 LEITESMMMNDVEAAIDLLRRLKDLGLRLSIDDFGTGYSNLSYLHRFPIDTLKIDQSFVR 785

Query: 890 GST-----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                   ++   I+R++I +  N+E  +IA+ I  E  +  L  +GC+Y Q  + A PL
Sbjct: 786 RMNSQESQDRYAQIVRTVIMLGHNLELDVIAEGIETEEQMHILKSLGCEYGQGYYFAKPL 845

Query: 945 GFNSILKLLKE 955
               + +LLK+
Sbjct: 846 PSPEVTELLKK 856


>gi|153938294|ref|YP_001389725.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum F str. Langeland]
 gi|152934190|gb|ABS39688.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum F str. Langeland]
          Length = 892

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 241/452 (53%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++   + +N +  
Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTIN---SYENEKFA 503

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL   + + RL G+ F II+ +  + 
Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKNKIGRLGGDEF-IIVQNITSI 562

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 682

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 741 KDKNFVDNVLNILRTTKLEPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  I+A+ +     
Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIVAEGVETIEQ 860

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 861 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 892


>gi|307322047|ref|ZP_07601425.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306892336|gb|EFN23144.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
          Length = 712

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/583 (22%), Positives = 259/583 (44%), Gaps = 35/583 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++  L      + +     + +  +   G  V  +D  +  + +    A + GL   
Sbjct: 117 LARVKGRLDLQQAQKQLDQRNMQFATTLENIGQGVCFFDADQRLILSNRRYAEVYGLPPE 176

Query: 444 SMHG--PIRNWLPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            +     +              +  +D           +  +      ++ +     +  
Sbjct: 177 MIKPGMTLSEITELRYAVGACPVVPHDE---YLAWCDAINSKSSP--QDWSMELKSGKAI 231

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            +         S+G    ++    DITE + +   I   A  D LT +PNR +   +L T
Sbjct: 232 RVHHE----RTSDG---GWVSTHEDITEHRNAERQIARLALHDPLTDLPNRAALKQKLDT 284

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +L+        +  V+ +D+D++K++ND+ G  VGD VL    +R+         +ARL 
Sbjct: 285 LLEQHQK-QGTQFAVLCLDLDRFKEVNDLFGHHVGDQVLCLAAKRLCATAV-GAFVARLG 342

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++  +E ++   A  A  +   ++    +    I +  S+G A + +    ++E+
Sbjct: 343 GDEFMVL--AEADASYAAQLADLIITILSEDAEIEGTRIRMGTSLGVAIFPADGDNAAEL 400

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           + NA+ A+Y AK  G      F     +   +R  ++ DL  A+   +L +VY P   + 
Sbjct: 401 MGNADAALYRAKADGRGTARFFEPQMDKWLRERRALQRDLQAAISQQQLSIVYQPQADI- 459

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +++G EAL++W+HP  GNI  S F+ IAEE  ++  I  ++L    R+  +W      
Sbjct: 460 GGDVIGFEALLRWNHPTRGNIPPSVFIPIAEESSLMIEIGEWVLREACREAAAWPR---- 515

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++       +L   +++++ +T   P R++L  +E V++ + ER+   LG L
Sbjct: 516 -KLSVAVNLSPVQFKHGDLDRLVKSVLIETGLEPERLELEITEGVLIDDLERAISTLGHL 574

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910
           + +G+ + +DDFGT  S LSYL   PFD +K + S +      +  AI+R++I + + ++
Sbjct: 575 KALGVRIAMDDFGTGYSSLSYLQSFPFDKIKIDQSFVRNIGLSQSSAIIRAVIGLGRGLD 634

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             IIA+ +     +  LTR  CD +Q   V  P   +   K +
Sbjct: 635 LPIIAEGVESTDQLAFLTRESCDQVQGYLVGRPRPISDYAKYV 677


>gi|325293586|ref|YP_004279450.1| GGDEF/EAL transmembrane sensory box protein [Agrobacterium sp.
           H13-3]
 gi|325061439|gb|ADY65130.1| putative GGDEF/EAL transmembrane sensory box protein [Agrobacterium
           sp. H13-3]
          Length = 794

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/665 (21%), Positives = 268/665 (40%), Gaps = 23/665 (3%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
            S   +   +I +      +   + G    V+     +          +  T+R+ +   
Sbjct: 140 LSRTELAFITIFILAILTTVLAAIAGNRFMVIRPLMRL-------AAAIEATRRVGSRHH 192

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                   +   +   F  +Q  L        I    ER++     +  +++  D     
Sbjct: 193 VDWRSKDEIGR-LAKSFNEMQTQLEKEEL--EIKHAHERKTEIYNRTPAMLFSLDRYDRI 249

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
              +       G     + G   N+   IH +DR  F     +             R   
Sbjct: 250 AAVSDYWVQATGYDRARILG--LNFADLIHPDDRSLFLQRKAAQHSPDAAHAGITVRFHC 307

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D      +I  + + + N     Y+ +  D+TE ++S +     A  D+LTG+ NRQ F
Sbjct: 308 MDGSVMDALILEKALDSGNAHQGTYLCVMTDVTELRQSEKRNRQQAISDHLTGLFNRQGF 367

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   +  +  + +     + ID+D++K IND LG A GD VL   T +I  LL   D
Sbjct: 368 EAILDVQIRDADRNGS-ELACLFIDLDRFKAINDNLGHAAGDAVLREFTLKIEPLLTPLD 426

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
             +RL G+ F I+L  +    +   F   +   +  P  +    I ++ASIG A +    
Sbjct: 427 SASRLGGDEFAILLAGDKVEERAQLFCERICTMLDTPFEIEGNSIRLSASIGMAIYPLHA 486

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            ++SE+L+NA++AMY  K  G N  + F   +     +   ++ D+  A+ ++     + 
Sbjct: 487 ASASELLQNADMAMYTRKRTGKNGSQIFDSSIMDRAREHAELERDIAQALSDNWFEAYFQ 546

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI  L   +  G EAL++ +HP+ G +S +  + +AEE   I  I   +L++   ++   
Sbjct: 547 PIQDLATGQTAGFEALLRLNHPEKGLLSPATIISLAEENGTIHRIGNVILDQSIANLARL 606

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                M   ++ +N +        L   +  ++ +    P R+ +  +E+V+M +  + R
Sbjct: 607 SHLPGMEQSYVAVNFSPLQFE-PGLPTRIAGVLHRYGILPKRLIIEITEAVIMKDDPQIR 665

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-------RIAI 898
            +L  + ++G  + LDDFGT  S LSYL   P D VK + S      +           +
Sbjct: 666 AILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVEIRQRSRML 725

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  I  ++  +  ++IA+ +  E   + LT +G DY Q  + A P     ++  L     
Sbjct: 726 VEGIAAISHKMNCSVIAEGVETEEQKELLTVIGADYGQGYYFARPQPIERLIAALNADNG 785

Query: 959 LVKNT 963
             +  
Sbjct: 786 ADRAA 790


>gi|91201200|emb|CAJ74260.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
          Length = 1069

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 132/576 (22%), Positives = 244/576 (42%), Gaps = 15/576 (2%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             I         +       +    +  R  S  V  S   +   D         P +A +
Sbjct: 502  AIFFEVVDNLALQLGRLIERKRADERIRKLSQVVEQSPASILITDKEGIIEYVNPKLAEL 561

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             G     + G     L        + +R + ++ +  +    Q E   +    + +W  +
Sbjct: 562  TGYTGDEIIGRTPRMLKS-GKTSNETYRNLWNTIISGK--EWQGELLNKKKTGELYWEHV 618

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             I P+ N  G +  Y+ I  DITE KK    +L  A +D LT + NR+ F + L   +  
Sbjct: 619  HISPIRNHKGHVTNYLAIKEDITEHKKFETQLLNMATRDPLTNLFNRRRFQEELQYWIAQ 678

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +         ++ +D+D +K +ND LG   GD++L+ L   +   L+  DI AR  G+ F
Sbjct: 679  TLRY-GATGALLFLDLDNFKYVNDTLGHQAGDELLIRLAEMLRSRLRDTDIFARFGGDEF 737

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             I+L    +  K    A  + + +         +  VT SIG   +      +  +L NA
Sbjct: 738  AILLPY-TDREKAGLIANEILE-LTREHTFEHSK--VTFSIGIVIFPEHGRDAETLLVNA 793

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            +LAMY AK  G N    F              ++ +  A++N    L   P+I L ++ I
Sbjct: 794  DLAMYRAKESGRNRFCVFSQEQKTHIEAQINWEKRIRNALDNDRFVLHLQPVIDLSNKNI 853

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            +G EAL++    K   I  +EF+ IAE   +I+ I+ +++    R       Q +   IF
Sbjct: 854  IGYEALLRMLGEKDELIFPAEFLSIAERFGLIRDIDRWVVCSAIRLAAE--QQFSDRGIF 911

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            + IN++ K   D EL   ++   + +   P  I    +E+ +M N   ++  L  L+ + 
Sbjct: 912  LDINLSGKAFADTELLGIIKHQFNTSGTKPGSIVFEMTETAMMENMIAAQDFLAALKHMD 971

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
               +LDDFG+  S  +YL ++  D +K +GS +           ++++I+ +A  ++   
Sbjct: 972  CRFSLDDFGSGFSSFNYLRHLTVDYLKIDGSFINDLPNNPVDQHMVKAIVELAHGLKKRT 1031

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +A+       ++ L ++G +Y Q +++  P   + +
Sbjct: 1032 VAEFADSGDTLQLLRKLGVNYAQGNYIGKPRSVSEV 1067



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 35/137 (25%), Gaps = 11/137 (8%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +L +   + G+  +  + +       D +   +         P    I G +   M G
Sbjct: 207 RQLLDSEGENIGLEENELKFANLASVINDGIVVLNENGHVTHWNPAAEKIFGYSEEEMKG 266

Query: 448 ----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +     +     R       ++           E      +     +      + 
Sbjct: 267 KNILNVIGGAEHTEPEMR-----FFNNIKAGCIINETIEITGVKKNKSEFPLEASFSTL- 320

Query: 504 NSNGDILRYIGIANDIT 520
              G  +  I I  DI+
Sbjct: 321 -QIGRQIHIIAIFRDIS 336


>gi|54293281|ref|YP_125696.1| hypothetical protein lpl0329 [Legionella pneumophila str. Lens]
 gi|53753113|emb|CAH14560.1| hypothetical protein lpl0329 [Legionella pneumophila str. Lens]
          Length = 740

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 143/568 (25%), Positives = 267/568 (47%), Gaps = 22/568 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453
           ++ +          +  S D +   D+    V        +  +    M     + L   
Sbjct: 180 TESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIMKKTSESQLIQY 239

Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                ++              +     ++ Y FR    + +   +    +P        +
Sbjct: 240 MSTQLLNSEQHAQHVKEFSIHIDDSSIQI-YHFR----NGKV--VECCSKPHR-VGPQTV 291

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +    DITEQ +  E +   A  D LT +PNR   +DR+   +   A    ++  ++ 
Sbjct: 292 GRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARH-KMKFAILF 350

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            D+D++K IND L    GD +L ++ +R+  L++  D LARL G+ F ++  S N+  +I
Sbjct: 351 FDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQI 410

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  + KS   P ++ ER+I +  SIG + + +   T + +L NA++AMY AK RGGN
Sbjct: 411 AGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGN 470

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +    +   + +  ++ DL  A+ + E +L+Y P   +   EI  +EALI+W+HP+
Sbjct: 471 QFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQ 530

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I   +F+  AE   +I  I  ++L    + I +WR    +P I +  N+ASK L   
Sbjct: 531 KGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGTWR-TMGLPEIRVACNVASKQLRQR 589

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    ++ L+ +    P  ++L  +E+V++   +  +  + +L+ +G+ + LDDFGT  S
Sbjct: 590 DFPAMVKDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNS 647

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L  +  D++K + S +     +    AI+ +II +A+++   IIA+ +  +  +K 
Sbjct: 648 SLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKF 707

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L +  C+ IQ   ++ P+    I KLL+
Sbjct: 708 LKKRRCNDIQGFLMSKPIPPEEIEKLLQ 735


>gi|218888167|ref|YP_002437488.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218759121|gb|ACL10020.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1076

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/624 (23%), Positives = 275/624 (44%), Gaps = 30/624 (4%)

Query: 367  IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
            ++P        ++ L+   V   + A     +    +  R   + + +   +   D    
Sbjct: 455  VRPGFSAEDRRLLELVSGHVADALAARRDLGRRALDEV-RYRASFMDAVAGMALLDAGGR 513

Query: 427  RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV-------------G 473
             +          G   G + G   +    +  +                           
Sbjct: 514  LLAVNRAFEAAFGYPDGVLAGT--DLRDLLPPDVAGQALREFGGLWLSVSAIRAAAGMGE 571

Query: 474  YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI---------TEQKK 524
               G ++  +    AD +  WM   +R +    G     +     +             +
Sbjct: 572  AAGGMVETSWPFLRADGEKRWMQQSLRILPGEAGHPPCALLQVTPLEGGNGRAGRDPATR 631

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
              E +   AF D LTG+PNR   LDR+ + L  +   D+ R  V+ +DID++K +N+ LG
Sbjct: 632  DEERMTQTAFHDVLTGLPNRVLLLDRVESALKRARRHDHYRFAVLFLDIDRFKVVNESLG 691

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               GD++L   + R+   L+  D LAR  G+ F ++L    ++ ++      ++ ++  P
Sbjct: 692  HRAGDELLRLFSDRVLPCLREVDTLARCGGDEFAVLLDDVEDTAEVGTIVERIQDALRTP 751

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702
              + + E+ + ASIG         ++ ++L++A+LAM+ AK  G    E F         
Sbjct: 752  FPVHDTEVYMAASIGVVVRARQYASAEDILRDADLAMFRAKESGKGRYELFDEDVPSAAP 811

Query: 703  DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            D++  + +L  A+E  E+ L + P++ L    I GLEAL++W+HP  G +S SEF+ +AE
Sbjct: 812  DKLRRENELRRAMERGEIELYFQPVVSLRTARITGLEALVRWNHPDLGLLSPSEFIPLAE 871

Query: 763  ELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            E  +I  ++  +LE     + + R          + +NI+++      + E   ++I ++
Sbjct: 872  ESGLIYHLDRHVLELGCASVRALRERAGPAAEFALNLNISARSFRRWNMVESYSSVILES 931

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              +P  ++L  +ES+++   +     L + +++G+SL LDDFGT  S L+YL   P D +
Sbjct: 932  GCNPLDVRLEITESLLLTGVDAVTDKLWKFKELGVSLVLDDFGTGYSSLNYLRQFPMDMI 991

Query: 882  KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K + S  +   E++ A  I++SI+ + + +   ++A+ I      + L  +GC Y Q   
Sbjct: 992  KIDKSFTSRVHEEKAAYGIVQSIVSLGRGLGLGVVAEGIERPEQAEVLLELGCLYGQGFL 1051

Query: 940  VASPLGFNSILKLLKERFPLVKNT 963
             + PL F+   KLL+ R PL  + 
Sbjct: 1052 YSRPLPFDRTAKLLERRCPLPLSA 1075



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 40/139 (28%), Gaps = 15/139 (10%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +G  V  +D     +     +A +LG     +          + +    +   +      
Sbjct: 137 AGIGVCVFDPAGQLLYMNGRMADLLGCGPEGIPSLFCA--RLVGLEGTADVLALFLRVAS 194

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI--TEQ-KKSLEGIL 530
            +        R    D       + +  + ++ G  L  + +   +  TE+ ++  +   
Sbjct: 195 GQDEGGSVRKRFLRGDGGTMLASVTLYAVHDALGLPLHVVHLVRPLERTERSERGGDRSE 254

Query: 531 CNAFQDNLTGIPNRQSFLD 549
             A          R+ F D
Sbjct: 255 ALA----------RRRFDD 263


>gi|54302402|ref|YP_132395.1| putative signal transduction protein [Photobacterium profundum SS9]
 gi|46915824|emb|CAG22595.1| putative signal transduction protein [Photobacterium profundum SS9]
          Length = 722

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 218/434 (50%), Gaps = 6/434 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  K+    +   A  D LTG+ NR+   + L  ++  +    N    ++  D+D +K+I
Sbjct: 283 TIVKQKTHELEKFALYDYLTGLANRRLLNEHLERVIQQTEYCGN-SAALLSFDLDDFKRI 341

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD VL  ++ R+  ++   DI+AR+ G+ F ++L + +++      A  +  
Sbjct: 342 NDSQGHEVGDGVLQQISHRLNSVVNKSDIVARIGGDEFTVLLSTSDSAFDAGRIAERLIN 401

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I+ PI L  +E++V+AS+G     S     S +L+NA++AMY AK  G  +   F  + 
Sbjct: 402 VISEPIFLNNKELSVSASVGITMIPSDGNDVSTLLRNADMAMYSAKKSGKRNYHFFNKAL 461

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +    ++ I+E L  A+   +  L Y PI      ++   EALI+W+HP+ G +    F
Sbjct: 462 QKKALYKMSIEEGLDTAISKKQFVLHYQPIFSFDSNKLCCYEALIRWNHPREGLLYPERF 521

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE   IK I  ++++ +   I   +         + +N++ +   D +L E ++ +
Sbjct: 522 IGIAEESGKIKDIGYWVIQEVCDVIKMHQLHTGD-SYRVAVNLSPRQFNDPDLLENIRRI 580

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I         +++  +ES +M N E +   L + +++GI++ +DDFGT  S L+ L  +P
Sbjct: 581 ILNVGIDARSLEIEITESTLMENVESAIHTLHQFKELGITVAIDDFGTGYSSLAMLKRLP 640

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +   +       I++++I MA  ++ ++IA+ I  +     L + GCD+ 
Sbjct: 641 VDKLKIDRSFVKDLSSNNSDQKIVQALISMAHTLQISVIAEGIETQEQFNLLQQYGCDFG 700

Query: 936 QDSHVASPLGFNSI 949
           Q    + P+    +
Sbjct: 701 QGYLFSKPVPITEL 714


>gi|114319993|ref|YP_741676.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226387|gb|ABI56186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1023

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 141/600 (23%), Positives = 261/600 (43%), Gaps = 18/600 (3%)

Query: 361  RLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT---GYFSQGIFSDGE-RQSLAVLGSGD 416
            + D  +           +V  +     Q++ A       ++   ++ E R + A   +  
Sbjct: 429  QYDYTLTLGGTERTFTTVVRPVRGADNQYLGALAQVRDITEARTTEAELRIAAAAFETHL 488

Query: 417  IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             +   D              I G     + G     L     ++R  ++ +      +  
Sbjct: 489  GMMITDAEGRIQRVNDTFCRITGYQQAEVLGQTPRLLSSGRHDER-FYQRMWAQVREH-- 545

Query: 477  GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
            G  + E   R  + +       I  + + +G+I  Y+   +DI+++K++   +   AF D
Sbjct: 546  GSWEGEIWNRRKNGEIFPEWQTITAVRDDSGEITHYVATLHDISDRKEAERQVHRLAFYD 605

Query: 537  NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
             LTG+PNR+  L+RL   L         +  ++ +D+D +K +ND  G   GD +L +L+
Sbjct: 606  TLTGLPNRRLLLERLAHCL-RGNHRSRRQGALLYLDLDHFKAVNDAHGHGTGDRLLQALS 664

Query: 597  RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA-----MRKSIAMPINLLERE 651
             R+   ++  D LARL+ + F ++L       + A          + K +  P+ +    
Sbjct: 665  GRLSNSIRESDTLARLNADDFLVLLTDLAEETQAAARGAEAAAEALIKQLEAPLVMDGEP 724

Query: 652  ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            I + ASIG   + + +      ++ AE AM+ AK  G N +  F             ++ 
Sbjct: 725  IHLHASIGITLFRNHETKPEVAVQEAEQAMHQAKQSGRNAICFFDPLMQADMLRRVHLER 784

Query: 710  DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
             L  AV +  L L + P +   D +I+G EAL++W HP+ G I    F+ IAE+  +I  
Sbjct: 785  GLRRAVHDGGLTLHFQPQV-GPDGDILGYEALLRWPHPEQGPIGPGVFIPIAEQSRLIIP 843

Query: 770  INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            +  ++L+  AR + +W        + + +NI+S     ++L   ++  +  T     R+K
Sbjct: 844  LGRWLLQAAARQLAAWARDPATRALTLSVNISSVQFRHDDLVAAVREALETTGAPAERLK 903

Query: 830  LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
            L  +ES++M  P++    + RLR +G+  +LDDFGT  S L+YL  +P D +K + S + 
Sbjct: 904  LEVTESLLMEEPDQVCATMERLRALGVHFSLDDFGTGFSSLAYLQRLPLDELKIDQSFVQ 963

Query: 890  GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     AI+ SII +A+++   +IA+ +  E     L   GC   Q     +P    
Sbjct: 964  SLEQAPAADAIVGSIIGLARSLSLHVIAEGVETETQRTRLAAHGCHRYQGYLFGAPAPLA 1023


>gi|258655313|ref|YP_003204469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Nakamurella multipartita DSM 44233]
 gi|258558538|gb|ACV81480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Nakamurella multipartita DSM 44233]
          Length = 1039

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/616 (22%), Positives = 250/616 (40%), Gaps = 29/616 (4%)

Query: 355  WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
               +  +    + +      + + V +I  T  +   A     Q  F D       +   
Sbjct: 427  GKPLWAQHTAAVFRTVEGAPIQMGVQVIDVTEARMA-ARRQAHQARFLDA-----ILENI 480

Query: 415  GDIVWDWDIVRDRVTTTPDIATILGLAS---------GSMHGPIRNWLPYIHINDRDNFR 465
            G  V   D              +  L                   + +  I  ++R    
Sbjct: 481  GSAVVACDAQGQVNLINLCTREMFNLPPAPWMPPPGIEQPPVYHADGITPIPPDERP--- 537

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              L   +     R   E            ++     + + +G +L  + + +D+TE+++ 
Sbjct: 538  --LSRSLRGELVR-DVETVFGEPGADRRIVLSSAHRLQDEDGAVLGAVLVMHDVTERRRV 594

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               ++  A  D LT + NR    DRL   +            ++++D+D +K +ND LG 
Sbjct: 595  ESALIRQALHDPLTDLANRALLGDRLDQAIARQQRQPEP-FALLLLDLDGFKLVNDSLGH 653

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              GD VL+++  R+   L   D +ARL G+ F ++L    +S  +A  A  +   +  P+
Sbjct: 654  QAGDQVLITVATRLRTSLWAEDTVARLGGDEFAVLLERTCDSQALA-IAEQLLGVLRRPV 712

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
             +    IT  AS+G A  T    T+  ML+NA+LAMY AK  G   V+ +R S   S   
Sbjct: 713  QVHAHTITPDASVGVALSTGD-DTAESMLRNADLAMYAAKDAGKGVVQVYRASMHESVLQ 771

Query: 706  MIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             +    +L LA++  +  + Y PII L+  ++ G EAL++W HP  G+I  S F+ +AE 
Sbjct: 772  RLIMDAELRLAIDEQQFSVHYQPIISLISGQLRGFEALLRWQHPVRGDIPPSSFIPLAES 831

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  ++L         WR        + + +N++ + + +  L   +   ++   
Sbjct: 832  SGLIVPLGGWVLREACSQAARWRRLFPPTRSLTMSVNLSVRQIQEPTLVATVLEALTDAG 891

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  ++L  +ES +         +L  L   GI L +DDFGT  S LS L  +P D VK
Sbjct: 892  LEPGDLQLEITESTL-DQRNLILGVLHELHDKGIKLAIDDFGTGYSSLSRLHTLPVDRVK 950

Query: 883  FNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
             + S +        A ++ + + MA ++     A+ I     +  L   GCD  Q  ++ 
Sbjct: 951  IDRSFIELLAGSNPAPLVAATVAMAHSLGMQTTAEGIESADQLPMLRMYGCDDGQGYYLG 1010

Query: 942  SPLGFNSILKLLKERF 957
             P+   +   L+  + 
Sbjct: 1011 RPMSAEAATALIHTQL 1026



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 10/152 (6%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +   +A     Q +         ++ G    +W   I        P    +LG     
Sbjct: 330 RDLTRSMAELDDVQSLLQRA--FEDSLTG---GLW-TSIDGRIHRANPAYCRMLGRPESD 383

Query: 445 MHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + G  +  W   +          +           L  E R R  D +  W         
Sbjct: 384 LVGTRLPTW---VDPASAARAEEMFTRVGTIDGAGLPVELRYRKPDGKPLWAQHTAAVFR 440

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              G  ++      D+TE + +       A  
Sbjct: 441 TVEGAPIQMGVQVIDVTEARMAARRQAHQARF 472


>gi|170754902|ref|YP_001780010.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum B1 str. Okra]
 gi|169120114|gb|ACA43950.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum B1 str. Okra]
          Length = 892

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 241/452 (53%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++   + +N +  
Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTIN---SYENEKFA 503

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL   + + RL G+ F II+ +  + 
Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKNKIGRLGGDEF-IIVQNITSI 562

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 682

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 741 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 860

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 861 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 892


>gi|27377700|ref|NP_769229.1| hypothetical protein blr2589 [Bradyrhizobium japonicum USDA 110]
 gi|27350845|dbj|BAC47854.1| blr2589 [Bradyrhizobium japonicum USDA 110]
          Length = 618

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 139/554 (25%), Positives = 247/554 (44%), Gaps = 18/554 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            Q +    E     V      V+         +          GL    M G        
Sbjct: 56  EQDLLRTREFLDTIVENIPIAVFAKCAKDSRYILLNRAGEDYYGLPREQMLGRTP---EE 112

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYI 513
           I   D        D  V      +  E  +     +     +  R   + + NG     +
Sbjct: 113 IFPADVARVVNEQDRRVVDTGEPMFLEGHLLEVGVNGHDRVVNSRKLLIRDGNGTPQYVV 172

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+  D+TEQ  S   I   A  D LT +PNR +F   L   L+L+         V+ +D+
Sbjct: 173 GVIEDVTEQLASQARISHLAHHDALTDLPNRSAFNAELDERLELAQEA-LTSFAVLSLDL 231

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K++NDV G  VGD +L+               +AR+ G+ F I++        +   
Sbjct: 232 DRFKEVNDVFGHPVGD-MLMRAAADRLAAEADGAFVARIGGDEFMILMPDNARREDMLTL 290

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + + I   + + +    V  S+G A +    + ++ +L NA+ A+Y AK  G   V 
Sbjct: 291 AERLVEVIGKELEIDDYLSQVGVSVGIAVYPDDGVDAATLLANADSALYRAKREGRARVR 350

Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F   + +   DR +++ DL  A+E ++  + + P  R+ D E++G EAL++W+HP  G 
Sbjct: 351 FFESETDQELRDRRLLQHDLRQALEQNQFLVHFQPQARM-DGEVIGFEALLRWNHPTRGF 409

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AEE  +I  I  ++L    R+  SW       P+ + +N++   +   +L 
Sbjct: 410 VPPDRFIPLAEENGLIVQIGEWVLREACREAASWPR-----PLQVAVNLSPVQVQAGDLE 464

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++ +T  +P+R+++  +E V++G+  R+  LL RL+ +GI + +DDFGT  S LS
Sbjct: 465 RSIHQILLETGLAPTRLEVEITEGVLIGDFTRALNLLRRLKALGIRIAMDDFGTGYSSLS 524

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   PFD +K + S ++    T +   I+R+++ +A  +   +IA+ +  E     L R
Sbjct: 525 YLQSFPFDKIKIDRSFISNLEATPQSAEIVRAVLSLAHALNIPVIAEGVETEAQRAFLAR 584

Query: 930 MGCDYIQDSHVASP 943
             C+ +Q   V  P
Sbjct: 585 EACEEMQGYLVGRP 598


>gi|254491242|ref|ZP_05104423.1| hypothetical protein MDMS009_1574 [Methylophaga thiooxidans DMS010]
 gi|224463755|gb|EEF80023.1| hypothetical protein MDMS009_1574 [Methylophaga thiooxydans DMS010]
          Length = 1085

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 135/738 (18%), Positives = 279/738 (37%), Gaps = 17/738 (2%)

Query: 230 GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG 289
             +S         +     +  I      + L   L +F+      +  + K  ++    
Sbjct: 215 WILSAAPLGGWSDMPRDVWQKRILIYGVAMTLFLLLALFIRFIFAASMANQKFRHLIEGS 274

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
                +L        +  A           +                          +  
Sbjct: 275 PIPYLLLNANREVSFINQAFSDNYGYQLEHVQGGESWWKITAHPQRYRDEFKAYLAHLHH 334

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                  +  +   N +         +L    +  T    +L   Y         E+   
Sbjct: 335 GDKTQPPSSMELEINTL--HGQTKVALLSTSFLQDTFDSELLLVVYDITVRKEAEEQLRF 392

Query: 410 ---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  + + +   D         P    I G +   + G   + L     +  + F  
Sbjct: 393 SSRVFNQAQEGIIITDTSGTITDVNPAFCEITGFSREEVLGKGPDILNS-GKHSPEFFSK 451

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +  S + +  G  Q E   R  + + +  ++ I  +++ +G    ++G+ +DIT+ K+  
Sbjct: 452 MWQSIIEH--GYWQGEVWNRRKNGELYAELLTISAITDDDGQSRHFVGLFSDITQTKQQQ 509

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LT +PNR  F DR +  +  S   +     +  +D+D +K +ND  G  
Sbjct: 510 ETLEMMAHYDVLTKLPNRVLFADRFSQAMAHSNRTE-TMLAICFLDLDNFKPVNDTYGHE 568

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ +  R+ + ++  D ++R  G+ F I+     +  +       + +S+A P N
Sbjct: 569 VGDQLLIEVAVRLRKNVRDEDTISRFGGDEFAILFRDIESQSECEFMLRRIHESLAQPYN 628

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + +  I ++AS G   +         +L++A+  MY AK  G N  + F    +    ++
Sbjct: 629 VNDTRIDISASSGVTFYPQENADLDTLLRHADQTMYQAKLAGRNTYKLFNPAKNRQNIEK 688

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
               + + L +E  +  L Y P + +   E+ G+EALI+W HPK G +S   F+ + E  
Sbjct: 689 QQWLQQIRLGLEQDQFRLFYQPKVNMRTGEVFGMEALIRWVHPKKGLLSPIHFLPLIEGS 748

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LY 823
            +   +  +++    + +  W D+     I + +N+AS  L      + ++A ++     
Sbjct: 749 EIEIDVGNWVMRSAMQQLQVWHDEGKE--IEVSVNVASLHLQSAHFIDDVEAALATHADI 806

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++L   E+  +G+      ++   R  +G+S+ LDDFGT  S L++L ++   T+K
Sbjct: 807 DSRYLQLEIVETSALGDIGAISKVIKLCRDLLGVSIALDDFGTGYSSLTHLRHLTASTIK 866

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +       +   I+  +  +A+     +IA+ +        L   GC+  Q   +
Sbjct: 867 IDQTFVRDMLDDPQDYTIVDGVSGLAEAFNRQVIAEGVETTESGLMLLMSGCERAQGYGI 926

Query: 941 ASPLGFNSILKLLKERFP 958
           A P+    +L  L    P
Sbjct: 927 AKPMPAEEVLIWLNAYKP 944


>gi|66047994|ref|YP_237835.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258701|gb|AAY39797.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330970974|gb|EGH71040.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 897

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 152/571 (26%), Positives = 271/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   DILAR + N F +++ +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDILARFASNEFAVLIDN-TDQEAGHATATQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDRPIPGQELIEKLK-RYPRRPSA 897


>gi|330829142|ref|YP_004392094.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328804278|gb|AEB49477.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 978

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 142/636 (22%), Positives = 280/636 (44%), Gaps = 22/636 (3%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLAT 393
                    +L       + + +  +    I Q  L+    L     L+     QH  A 
Sbjct: 351 PVRYPKATRLLALNASAYIGIPLHGQSGAPIGQITLLLDTPLEEPEQLLDLLSSQHERAA 410

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               +    D  R +     + D +   D     +      + I G     + G     L
Sbjct: 411 IELKRLATDDALRLAEVAFNTHDGLIVMDHNGIILKVNHSFSRITGFGEVEVIGHSIRKL 470

Query: 454 PYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +  D   ++    ++      +     E R    D     + + +  + +  G++  
Sbjct: 471 RPTYYGDHLKEDVSRTVNE-----QEFWLGEERCLHKDGHLFPVRLMVNGVKDEQGELSH 525

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I    DIT++K++   I   A+ D+L G+ NR+S    L   L  S   +     ++++
Sbjct: 526 FICSFYDITQEKEAARHIEQLAYYDDLCGLHNRRSLNHILQQTLSAS---NGQWGALLLV 582

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-- 629
           D+D +K IND LG A GD +L ++ +R  EL +   + AR+SG+ F ++           
Sbjct: 583 DLDNFKSINDSLGHACGDLLLQAVVQRFRELPQDNLVQARISGDEFALLFTQLGQGEVTA 642

Query: 630 ---IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                 FA  +      P ++ + ++  +AS+G + ++ ++     +++ A+ A + AK 
Sbjct: 643 KILAEHFARELMGLFRTPFDIGDHKLHCSASVGISLFSGNETDHLVLMQQADTATHMAKR 702

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G  H   F  +  +   +R+ +  +L  A+ + EL L Y P  R+ +  + G+EAL++W
Sbjct: 703 AGQGHYVFFSEAMAQHEKNRLTLTNELRDALRHHELQLHYQPQYRVDNGSLSGIEALLRW 762

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +   EF+ IAEE  +I  I  ++++        W ++    P  + +N++++ 
Sbjct: 763 QRSDGTMVPPGEFIPIAEETSLILEIGYWVMKTACAQYSFWLNRGLQIP-HLSVNVSARQ 821

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                  + ++ ++  T   PSR+ L  +ESVV+ N + S   + +L+++GI +++DDFG
Sbjct: 822 FHTQGFVQQVEYILRDTGVPPSRLLLEVTESVVLENRQESIARMRQLKELGILISIDDFG 881

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL  +P D VK + S +     +E+  AI+++I+ +A+    T+ A+ +  E 
Sbjct: 882 TGYSSLAYLRDLPADEVKLDRSFIQTLVHSEQDRAIVKAILDLAQVFRFTVTAEGVEEEA 941

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  L  +GC + Q    + PL    + +LL  R P
Sbjct: 942 QLAILKALGCQHYQGFLTSRPLTVKGLEQLLGSRAP 977


>gi|261821440|ref|YP_003259546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium wasabiae WPP163]
 gi|261605453|gb|ACX87939.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pectobacterium wasabiae WPP163]
          Length = 722

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 131/580 (22%), Positives = 242/580 (41%), Gaps = 15/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +++   L          +   R       S D +   +              +L     
Sbjct: 152 ASLVMDKLEMRRLELARKASQVRFENIANTSPDTILCVNEKGMITFWNAAAEKMLEYRDD 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     +  I  +        L +        +  E  V+A       + + +    
Sbjct: 212 EIIGQN---INRIVPDAFIVQLNHLVTDRDSLMKGVTLELNVQAKSGSLVPVELSVS--M 266

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             + D + Y  I  DITE++++ E +   A  D LTG+ NR      L T L      + 
Sbjct: 267 WEDNDNVSYGAILRDITERRRNEERLFLLAHMDPLTGLANRTLLTSNLETALK-----NE 321

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +M++D+D +K +ND LG + GDD+LV + ++I   ++  D++AR+ G+ F ++   
Sbjct: 322 PAVCIMMVDLDGFKDVNDSLGHSSGDDILVHVAKKIKATVRSGDVVARMGGDEFALLFPG 381

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++       A  +   I+  + + + +I ++ASIG   +    +T  ++L +A+LA+Y 
Sbjct: 382 LSDKKVAGKIAEQIIHEISQAMIIDDHQINISASIGAVLYPEYGVTVQDLLTSADLALYQ 441

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F        +      L    A E  E  + Y P ++L   EIVG EAL
Sbjct: 442 AKSEGRNCYRFFTRELLEVFQAKHAFQLEFVRAYEQHEFEMFYQPQVKLATNEIVGAEAL 501

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +  + F+   E     + +  +++E   R    W  Q +     I IN+ 
Sbjct: 502 LRWRHPERGLLGPAAFLTALENGPWAERVGDWIVETACRQAAEWC-QVSNSYFRISINLF 560

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S       L + +   +++T   PS ++L  +E++++   E     L  LR  GI +  D
Sbjct: 561 SAQFRTGMLAQKIMGALARTGLQPSSLELEITENIILRYDENMLQPLKTLRDAGIGIAFD 620

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           D+GT  + LS L   P   +K + + +     +    AI+R+I+ + K+    +IA+ + 
Sbjct: 621 DYGTGYASLSMLKNYPVTRLKIDQTFVRTMCESPPDAAIVRAILYLGKSFGLGVIAEGVE 680

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                + L   GC+  Q      P+      +LLK   P+
Sbjct: 681 TLEQSERLRGKGCEEAQGYLFGHPMPAEEFTQLLKLNKPI 720


>gi|307821994|ref|ZP_07652226.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
 gi|307736560|gb|EFO07405.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
          Length = 662

 Score =  482 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 148/719 (20%), Positives = 287/719 (39%), Gaps = 79/719 (10%)

Query: 254 RACSEIALSSSLI--IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM-VTASI 310
                I  +  ++  +F   +    R H  +    +   AC+A            V   I
Sbjct: 3   FDLLTILTAYLIVDAVFAIAFAVTVRRHPNLAGPGWWLAACMAFFTGFLGICLRDVIPDI 62

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
             I +A+ ++      ++ G++G+         W L  ++ +     +   ++      A
Sbjct: 63  VSIVIANSLILTGGVCVWIGIRGFFGLR---QHWSLFALFVLPAATLLNLFMEVWPSVSA 119

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
               +   +ILIG   I+ +                                + +  VT 
Sbjct: 120 RQITMSTFIILIGLFTIRDI--------------------------------VRQRSVTL 147

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           + +   ++G         +   +  I    R    +                        
Sbjct: 148 SMETNLLIGFLGAETVIHVIRLITLIM---RPTAISSYILSPEQPDRVF----------- 193

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W+ I             R + +   ++ +    + +   A QD+LT +PNR+  L+R
Sbjct: 194 -LMWLFITGTA---------RLLIMVTLVSAR--LQDELNQLATQDSLTQLPNRRFLLER 241

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   +D+   D   +  ++++D+D++K +ND LG + GD++L  +  RI   L+  D++A
Sbjct: 242 LKHGIDVERRDGK-QLALLMLDLDRFKAVNDSLGHSAGDELLQQVADRIQSRLRDVDMVA 300

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL---------EREITVTASIGFA 661
           RL G+ F ++L    +    A  A  +   ++ P  L            E+ + ASIG +
Sbjct: 301 RLGGDEFIVLLEDIAHPEDAARVAEEIVADLSRPFQLPRSNETDHEPGHEVQIGASIGIS 360

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
            +         +++ A++AMY AK  G      F          R+ ++  L   +E  E
Sbjct: 361 LYPQHGDNPELLMEQADIAMYEAKQAGRGCFAYFSEELTIAVRKRIALEGRLRRGIEQQE 420

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L + Y P I +    IVG EAL++W  P  G I+   F+ IAEE  +I AI  ++L    
Sbjct: 421 LRVFYQPQIDIASGRIVGAEALVRWQSPTEGLIAPINFIPIAEETGLILAIGEWVLRETC 480

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R    W       P+ + +N++ +     ++   +  ++++T +   +++L  +ES +M 
Sbjct: 481 RQGQCWLAD-GFLPLTLAVNVSPQQFRRCDINALVAEVLAETGFPAGQLELEMTESGLMD 539

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897
           N +++  +L  LR  GI L +DDFGT  S L+YL   P D +K + S +      +  + 
Sbjct: 540 NQDKAVEVLNNLRAQGIRLAIDDFGTGYSSLAYLKRFPLDVLKIDKSFIDDIPHLQDDME 599

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I  +II M   +   ++A+ +  +  +  L + GCD  Q    + P+      +LL+ +
Sbjct: 600 ITATIIAMGHILGFKVLAEGVETQEQLDFLRKKGCDAYQGYFTSKPVPAEDFAELLRRQ 658


>gi|222084396|ref|YP_002542925.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221721844|gb|ACM25000.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 778

 Score =  482 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 146/763 (19%), Positives = 283/763 (37%), Gaps = 39/763 (5%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           +IG  + + +F       ++        A     +   +  F  +            +  
Sbjct: 25  LIGSLATMLLFSRAQECRSQQRSYWVVAAAFASGVSIWATHFIAMLAYDGGLPISYGLSL 84

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS---------FYYPM 305
               +  +     F         W   + +     +  + I                   
Sbjct: 85  TILSVVFAILGSWFAIAV--AFEWDNTISFAIGGMLMALGIASMHFTGMQAIQAPAILAH 142

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
             +       A   L    F+ +  M G+ R  L     +L         M+      + 
Sbjct: 143 DPSRTLAAIAAGAALGALSFVAFFRMGGHRRIALGTLLLVLAICALHFTAMSGVTLTPDP 202

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            ++ A +    +++  I       ++     +  +             S + +       
Sbjct: 203 TVEAATLSIDRIVLAGIIMAASTGLVLIALGAAFVDRHLTDLRGFANASLEGMLIVR-DG 261

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFR 484
             +        I G +   + G        +    R      L++ +    GR +  E  
Sbjct: 262 RVIDANERFVAISGWSLQRLIGKSPGDFLTLDAAMRPEEAASLETALLSESGRSIPVEVV 321

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +R        +I R              + +  D+TE++++ + I   A  D LT +PNR
Sbjct: 322 IRT-------IIYRGHECR---------VLVVRDLTERRQAQQMIEHLAHHDTLTDLPNR 365

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F +R+   L ++         V  +D+D++K INDV G A GD +L  +   +    +
Sbjct: 366 AFFDERIRQALQMA-EHKGTEAAVFCLDLDRFKAINDVFGHAEGDRILCKVADILRRSAE 424

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +ARL G+ F II   ++        A  +    A  ++       V  S+G A + 
Sbjct: 425 DSDTVARLGGDEFAIIQPGQSQPEGARRLAERILAEFAAEMDTARDPTAVGVSLGIAIYP 484

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
               ++ ++  NA++A+Y  KH        F   +      R  I+ DL  A+   +L++
Sbjct: 485 RDGHSAEQLYCNADIALYRVKHTSRGFACFFDAGMDETVRTRRQIESDLRQAILRRQLHV 544

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI+   + +I G EAL++WDHP  G I    F+ IAEE   I  +  ++LE+   + 
Sbjct: 545 DYQPILDAQNGQISGYEALLRWDHPVRGVIEPDTFIPIAEESGSIVQLGEWVLEQACIEA 604

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W D+A      I +N++    +   L + +  ++++T   P R++L  +E+ +M +  
Sbjct: 605 ARWHDKA-----SIAVNVSPVQFMIPTLYDQVAQILARTGLDPHRLELEITEAALMRDRV 659

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILR 900
                L RL ++G+ + +DDFGT  S LS L   PFD +K + S            +I+R
Sbjct: 660 VVLSTLQRLHRLGVRVVMDDFGTGYSSLSNLRAFPFDKIKVDRSFTGALEHDPAARSIVR 719

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +II +  ++   ++ + +  E   + +   GC  +Q   +  P
Sbjct: 720 AIIGLGHSLNMPVVTEGVETESQRRIVVEEGCAQLQGFLLGKP 762


>gi|83644835|ref|YP_433270.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632878|gb|ABC28845.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 999

 Score =  482 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 144/593 (24%), Positives = 252/593 (42%), Gaps = 33/593 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGER------QSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +         A       I    +R       S AV  S   V   +     V       
Sbjct: 403 VEERTEALAQANQELKLEIAEREQRELSLRLLSKAVESSRSGVIITNADGIIVYVNNAFL 462

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQF 492
            + G     +     + L        +     R    +F       ++ E     A    
Sbjct: 463 AMTGYDRMQVFDKHISSLE-------ERVCFPRLDQINFRELPEPMIRDELHCYDASRNQ 515

Query: 493 HWMIIRIRPMSNSNGD-----------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           HW  I I P+                 +  Y+    DIT  KKS + +   AF D+LTG+
Sbjct: 516 HWAQISIFPIYEQAARNYGVFRPAPEKVSHYVVTCEDITLLKKSKDEMEQLAFYDHLTGL 575

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            +R  F  RL   +  +  D ++   +M IDID +K+IND  G   GD+VL ++  RI +
Sbjct: 576 ESRLLFKLRLENAITRAVRDKSM-IALMFIDIDHFKEINDNYGHDAGDEVLKTVAARIKQ 634

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            ++  D +AR+SG+ F +IL      +     A  +R+++  P     +E  V ASIG +
Sbjct: 635 NVRKNDTVARISGDEFTVILSDIRGHVDARRVAQGIRRTLNRPFKFAGKEYIVGASIGIS 694

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSE 719
                 +   E+LKNA+ AMY AK  G N ++ F  S       +  ++ ++   +   +
Sbjct: 695 IAPDDGVELDELLKNADTAMYQAKRNGRNDIQFFSHSMNEEAKKKQTLEAEMIQGLSKKQ 754

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y P+I L  +++VGLEAL++W+HP  G I    F+ +AEE  +I  +  +++  + 
Sbjct: 755 FRLDYQPVIDLETKKLVGLEALLRWNHPSQGVIYPDHFIPLAEETGLIVELGKWVINEVI 814

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                 R       + + IN++++ L D  L   +  +++     P  I+L  +E+ ++ 
Sbjct: 815 SATRELRKM-GFSDVGVAINVSARQLRDKGLIADIGRIVAANRNEPCNIQLELTEATIIE 873

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
             E+S   +  L K+G  +T+DDFG   S +S L  +P D +K + S +           
Sbjct: 874 ELEQSNRSINDLNKLGFGITVDDFGAGYSSMSNLKQLPIDCIKIDKSFVHNMLRKGDDAE 933

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           I++++I MA N++  ++A  +     +K L    C   Q  + +     + I+
Sbjct: 934 IVKAMISMAHNLKLNVVAVGVEDAEQVKFLKENKCFLAQGFYFSKAGDLHEII 986


>gi|313683553|ref|YP_004061291.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156413|gb|ADR35091.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 693

 Score =  482 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 228/445 (51%), Gaps = 6/445 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I +     + +     +   A  D LTG+ NR  F +RL   ++ S    N R  ++ +D
Sbjct: 247 IALLEQHNQLRAQKNALQYQATHDALTGLANRVLFSERLEYAIEKSKIR-NTRMALLFVD 305

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K+IND LG   GD VL  +T+R+   +   + LAR  G+ F +I+    N  +++ 
Sbjct: 306 LDHFKEINDSLGHEAGDKVLTIVTQRLKHTIDKEESLARFGGDEFTVIIEELQNLEEVSL 365

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  PI +   E+ V  SIG + +  +  T+ ++LK A+ AMY AK+ G N+V
Sbjct: 366 LADKILNVLLAPIAVDHHELYVGCSIGISLYPDNGDTTQDLLKYADAAMYAAKNEGRNNV 425

Query: 693 ESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +         +RV+++  L   ++N E  + + P +   +  + G+EAL++W+ P  G
Sbjct: 426 RYYSSEMTTRALERVVMETSLRAGLKNGEFIVYFQPQVNGKENRLFGMEALVRWNSPTVG 485

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S + F+ IAE   +I  ++ ++++     I  W  +   P I + +N+  K L   + 
Sbjct: 486 LVSPAVFIPIAESTGLIVELDRYVMKHAMTQIAQWYKEGLNPGI-LSMNLTMKQLQQKDF 544

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E ++ L+++T  S   ++L  +E  +M +P+ +  +L  + +IG+ + +DDFGT  S L
Sbjct: 545 IEYLKTLLAETGCSIEWVELEVTEDQIMIHPDEAIDILREISRIGVKIAVDDFGTGYSSL 604

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P + +K + S +      E+ +AI ++II MA+++   +IA+ +        L 
Sbjct: 605 SYLKKLPINKLKIDQSFVRELPDDEEDVAITKAIIAMAQSLNLDVIAEGVETAEQKDFLV 664

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
           + GC  IQ    + P   + I  +L
Sbjct: 665 QNGCINIQGYFYSKPKPADEIRTIL 689


>gi|302878539|ref|YP_003847103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581328|gb|ADL55339.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 927

 Score =  482 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/573 (24%), Positives = 254/573 (44%), Gaps = 32/573 (5%)

Query: 397 SQGIFSDGERQSLAVL--GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           ++ +     R         S  ++ D  +    V      A   G     M       + 
Sbjct: 365 TRELQISEARFRQMFEHHASPMMLID-PLGGAVVDVNQAAAEFYGYRIAEMQAMNIAQIN 423

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                D              +     +  ++  A  +   + +   P+   +   L +  
Sbjct: 424 LQTEED--------CRPQQTKGNCFFFSHQL--ASGEVRLVEVHSSPV-EVDSRPLLFF- 471

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +DITE++   E +   AF D LT +PNR+  LDRL   L LS T       +M +D+D
Sbjct: 472 IVHDITERRHLEEKMHDLAFYDLLTKLPNRRLLLDRLEKAL-LSGTRSRHHSALMFLDLD 530

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLK 629
            +K +ND+ G  +GD +LV +  RI   ++  D  AR  G+ F +++   +        +
Sbjct: 531 HFKVLNDLHGHDIGDQLLVEVANRILGCIREQDSAARFGGDEFVVMIEDLSENLSDAVNQ 590

Query: 630 IADFAIAMRKSIAMPINLLERE----ITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               A  +R ++A P  L   E       ++SIG   +   +    ++LK  ++AMYHAK
Sbjct: 591 ADSVAEKIRCALAAPYLLKRGEEVISHHCSSSIGVTLFRDHEENLEQLLKWTDMAMYHAK 650

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N +  F         +R  ++ DL  A+E  +  L Y   +   D    G E L++
Sbjct: 651 DAGRNVIRFFDPVMQTAIENRAALENDLHTALEERQFELFYQIQVD-RDGRAEGAEVLLR 709

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G +S ++F+ +AE+  +I  I  ++L+ +   I  W+       + I +N+++K
Sbjct: 710 WRHPQRGLVSPAQFIPLAEDTGLIVPIGEWVLDTVCAQIAKWQ--GEQRNLVIAVNVSAK 767

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               +   E +Q +I +   SP+ +KL  +ES+V+ N + +   +  L+  G+S ++DDF
Sbjct: 768 QFRQSNFVELVQQIIQRHQVSPALLKLELTESLVLDNIQDTIDKMKVLKAFGVSFSMDDF 827

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  +P D +K + S +         + ++++I+ +  N E  +IA+ +  E
Sbjct: 828 GTGYSSLSYLKQLPLDQIKIDQSFVRDIATDKTDLVMVKTIVDLGVNFEMDVIAEGVESE 887

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +  L + GC   Q    + P+   +   L+K
Sbjct: 888 VQLGLLKQCGCSRFQGYLFSKPVPVEAFELLIK 920


>gi|237748749|ref|ZP_04579229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
 gi|229380111|gb|EEO30202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes OXCC13]
          Length = 870

 Score =  482 bits (1242), Expect = e-133,   Method: Composition-based stats.
 Identities = 145/568 (25%), Positives = 262/568 (46%), Gaps = 43/568 (7%)

Query: 408 SLAVLGS-----GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--------- 453
           +LA+  S      D ++  D              + GL+   + G  + +L         
Sbjct: 319 ALAIASSLFENNRDGIFIADQTGRITVVNYQFTRMTGLSQEQIMGNHQWYLQPGISDSSC 378

Query: 454 -----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                  I   D +     + +F   R  R++  +             + I+ + + +  
Sbjct: 379 YSQLCDVIICTDHE----EMATFEKNREQRIEPTY-------------LTIKIVRDMDEK 421

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ YIG+  DI++     +        D LTG+PNR   LDRL   L  +  +   R  V
Sbjct: 422 IISYIGVLLDISQNDFLEDHTRYMIEHDFLTGLPNRILLLDRLGQTLIAAERNHR-RAAV 480

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+DK+K IND LG A+GD +L  + +R+ + ++  D ++R  G+ F I+L     + 
Sbjct: 481 MFLDLDKFKHINDTLGHAIGDRLLQQVAQRLTQCVRKNDTVSRQGGDEFVILLSDIGEAD 540

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A  A  +  +++    +   E+++T+SIG A +         +LKNA+ AMYHAK  G
Sbjct: 541 DAAMVANNIMHTLSQNYQIENYEMSITSSIGIALFPEDGKEIDTLLKNADTAMYHAKENG 600

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N  + F         +R  ++EDL  A++N + +L Y PII + ++ + G+EA ++W+H
Sbjct: 601 RNAYQFFNAEMNLHLIERSQLEEDLKTALKNGDFFLEYQPIIDMHNQHMTGVEAFLRWNH 660

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G +  S F+ IAE   +I  I  +++    +    W+DQ       + +N++S  L 
Sbjct: 661 PQFGILMPSRFLSIAENTGLIGPIGEWVINTACKQAKKWKDQGFSK--TVSVNLSSIQLK 718

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L   ++  + +   +P  ++L  +E  +  N      LL  LR +G+ + LD+FG  
Sbjct: 719 QKDLLGTIKNALEENDLTPDFLELQITEGSITENIRTVIDLLNELRNMGVKIALDNFGNG 778

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           CS +S+L  +P + +K + S +   G+      +  +II MAKN+   + A  +      
Sbjct: 779 CSSISHLKRVPIEKIKIDPSFIRALGTQSSDADVAGAIIAMAKNLNLKVSAGGVETTDQA 838

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952
             L  +GCD  Q   ++  L    I +L
Sbjct: 839 NRLKEIGCDEYQGYVISPTLPAKEINRL 866



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 8/144 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR------VTTTPDIATILG 439
             + +      +Q +  D +   +AV  S   +W   + + +         +     I G
Sbjct: 173 EKKKLGREEARAQQLQEDSQLYRMAVERSEIGLWKASLSKKQAMEEMHFHFSDKGGDIFG 232

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             S +  G    ++  IH +  +  R  L S +  + G    E R+   +  F W+  + 
Sbjct: 233 FVSFADIG-FTQFMDTIHSDSVEKIRGALRSAINSKIG-FDIEIRINKPNGDFAWVNWKC 290

Query: 500 RPMSNSNGDILRYIGIANDITEQK 523
             +  +    +   GIA DIT  K
Sbjct: 291 FLIEENQTGAILLEGIALDITSHK 314


>gi|309779911|ref|ZP_07674665.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308921270|gb|EFP66913.1| sensory box protein/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 1056

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/580 (23%), Positives = 264/580 (45%), Gaps = 13/580 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +I  V      +  I    E  SL +  + + +   D              +LG ++
Sbjct: 481  TLALISDVTYRSALTHTIREQKEFFSLLMGSTVEAICGLDQNGCCTFANAACERLLGYSA 540

Query: 443  GSMHGPI-RNWLPYIHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + G      + + H +            +S        +  E     +D     +   
Sbjct: 541  QELAGKPMHALIHHTHEDGSPYELAACQIQNSIASGAHVHVDNEV-FWRSDGTSLPVEYW 599

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              P+   +G +   I    + +E+++  + +   A  D+LTG+ NR SF+  L T L  +
Sbjct: 600  AYPIV-RDGQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQA 658

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               +   P V ++D+D +K+IND LG A GD +L  +  R+ + L     + RL G+ F 
Sbjct: 659  DASER-HPVVAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFA 717

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
             ++              A+ +SI  P ++   ++ +  S+G A +  + +    +L++A+
Sbjct: 718  FVVDESYGPPIATRI-EAVMESIRRPFSIAGLDLAINGSVGAARYPGAGLDVDTLLRSAD 776

Query: 679  LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +AMY AK  G     + RV +       +  +L  A++  E  L + P I L      G 
Sbjct: 777  VAMYVAKREGHGFTFTDRVDAGTPRPF-LLSELRRALQEDEFILHFQPTIPLQGLPHFGF 835

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EALI+W+HP+ G +   EFM + E   +I  +  +++        +  +       F+ +
Sbjct: 836  EALIRWNHPRLGIVGPGEFMPMVEVSDLIHPLTEWVIASAVSRFKTIIESWPNA--FVAV 893

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++ ++L++ +    +Q L+ +  +  + +K+  +ES VM +P+R+   L  L  +G+ +
Sbjct: 894  NVSMRNLINQKFTSSVQYLVEQNRFPVNCLKIEVTESAVMADPDRTLRALNELHGLGVRI 953

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             +DDFGT  S L+YL  +P D +K + S ++G +      AI+ SII +A ++  ++ A+
Sbjct: 954  AVDDFGTGYSSLAYLQKLPVDDLKIDRSFVSGLSGSQPSKAIVHSIISLAHSLGLSVTAE 1013

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             I  E D++ L   GCD+ Q  ++  P+ F+++   LK R
Sbjct: 1014 GIESEADMRILRAAGCDFGQGYYIGHPMPFDAVHDWLKSR 1053


>gi|222111077|ref|YP_002553341.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax ebreus TPSY]
 gi|221730521|gb|ACM33341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax ebreus TPSY]
          Length = 900

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 251/604 (41%), Gaps = 23/604 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++  A        V        + +      ++ +    +     +    D++++ D   
Sbjct: 304 LLGAAFSLLAGWFVGQQVNARQRAMALAREMTRELRRTRDELEATLNAVPDLLFEVDAQG 363

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                    A ++G  + ++ G  R     +           LD    Y  G  +     
Sbjct: 364 GIHHYRSARADLIGTRAQALVG--RTLGDVLPPAAAAECMAALDEAAEY--GYSEGRQYS 419

Query: 486 RAADNQFHWMIIR------IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
                  HW  +         P + +      +I ++ D+T + ++   +   A+ D LT
Sbjct: 420 LDIGGSQHWFELSVACKQGGAPQTGAGPGQRHFIALSRDVTRRHEAEAAMYRLAYFDALT 479

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+  L RL   L  +     +   +  ID+D +K+IND  G  VGD +LV +  R+
Sbjct: 480 GLPNRRLLLQRLQDALVTAQQQGGM-GALFYIDLDNFKEINDARGHGVGDGLLVQVAARL 538

Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654
            +     + +ARL  + F +++    +       +    A  +R+ +  P +L       
Sbjct: 539 QDAAGPQETVARLGSDEFVMLVPRLGDGPSVAREQACRRAQQLRECLDAPYDLGGVHYGS 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           T SIG   +  +     ++L+ A+ AM+ AK RG N V  F         +R+ + +DL 
Sbjct: 599 TGSIGVTLFPKNGEAVEDLLREADTAMFCAKDRGRNQVCFFEQDMHAAAQERLALLQDLK 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            AV+N  L     P +     +++G E L++W HP+ G +  ++F+ +AE+  +I  +  
Sbjct: 659 SAVDNDALLTYAQPQVDAA-GQLIGAELLLRWPHPQRGFVPPAQFIPVAEQAGLIVRMGA 717

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++++    +     Q     + I +N++ +     +  E ++A +  T    + + L  
Sbjct: 718 RVIQQACATLAELHQQGR--ALSISVNVSPRQFRQADFVEQVRAALHSTGAPAALLTLEV 775

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +ES+++ N + +   +  L  +G+  ++DDFGT  S L+YL  +P   +K + S +    
Sbjct: 776 TESLLVENWQDTARRMHELVALGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 835

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           S     AI+++I+ +A+++   ++A+ +        L    C  +Q      P      L
Sbjct: 836 SDANDAAIVQAILSVARHLRLRVVAEGVETRQQADFLIAHHCHGLQGYLFGLPQPLRDWL 895

Query: 951 KLLK 954
             LK
Sbjct: 896 AGLK 899


>gi|85373779|ref|YP_457841.1| hypothetical protein ELI_04760 [Erythrobacter litoralis HTCC2594]
 gi|84786862|gb|ABC63044.1| hypothetical protein ELI_04760 [Erythrobacter litoralis HTCC2594]
          Length = 737

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 134/557 (24%), Positives = 250/557 (44%), Gaps = 18/557 (3%)

Query: 411 VLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT--- 466
           +  SG   +W  D     +  T      L      + G     L     +D D   +   
Sbjct: 41  IEQSGIGWIWASDADGRLIYLTEGACQHLDRGPEELLGTPLVELFETDPDDPDGGTSRPL 100

Query: 467 --ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L +    +   +++  R  A+D +  W  +   P  + +G+   Y G A DIT + +
Sbjct: 101 NFQLKAHNKLKDLTVRFALRKSASDVKQTWWSLTAHPKFDGSGNFCGYRGNAKDITVEYE 160

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   A  D+LTG+ NR     RL  IL  +         +M++D+DK+K++ND +G
Sbjct: 161 RKLVDTKLAEYDSLTGLANRHYMNKRLENILA-AYKTAKRSCALMMLDLDKFKQVNDTMG 219

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD VLV  + R+  ++     + RL G+ F +IL   ++   + + A  + K ++ P
Sbjct: 220 HPAGDAVLVQASERLRAIIGDRGEIGRLGGDEFQVILPDIDDRGTLGEIAEKIIKIVSQP 279

Query: 645 INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
             +  ++   +  S+G A      +   E++K ++LA+Y AK+ G      +        
Sbjct: 280 YPVEDDKRAIIGTSVGIAIAPYDGVEKEELVKGSDLALYAAKNGGRGQFRFYHADLKDEE 339

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R  + +DL  A+   EL L Y P++R  D ++V LEAL++W H + G++S   F+ +A
Sbjct: 340 QERQALLDDLRQALAAGELQLNYQPVVRADDNQVVCLEALMRWHHEERGSVSPDVFIPVA 399

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  + L +   D + W        + + +N+++         E +  +++ T
Sbjct: 400 EESDLIIQMGEWALRQACEDALQWPKS-----VRVAVNVSAVQFASKSFPETVANVLAHT 454

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R++L  +ESV +G+ + +      L+ +G+ L LDDFGT  S LSYL   PFD +
Sbjct: 455 GIDADRLELELTESVFLGDTDATEETFKMLKSLGVRLALDDFGTGYSSLSYLRSAPFDKI 514

Query: 882 KFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K + S +   TE       I+ +I+ ++  +      + +     ++ +   G   IQ  
Sbjct: 515 KVDRSFVDSCTEQEKNSAKIIAAIVGLSNALGMETTVEGVEAFDQLEIVRSKGAKLIQGW 574

Query: 939 HVASPLGFNSILKLLKE 955
             A  +   +IL+++  
Sbjct: 575 LYARAMAQETILQMMAS 591


>gi|134291167|ref|YP_001114936.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia vietnamiensis G4]
 gi|134134356|gb|ABO58681.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia vietnamiensis G4]
          Length = 913

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/556 (23%), Positives = 249/556 (44%), Gaps = 22/556 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           +S A+   G+ V    +           P   TI G  S  + G     L          
Sbjct: 366 RSRALDAIGNGVLITRVEAGEEIVEYANPAFETITGYTSAQVVGRDHAGLARAGQQGL-L 424

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F  +  +      G      R R AD    W  + + P+ +    +  +I + +D+TE  
Sbjct: 425 FEQMAQALAAGSAG--ARLLRSRRADGSAFWGQLYVAPVRDD---LTYHICVISDLTELI 479

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            S + ++  A +D LTG+PNR +  + +   +            ++ +D+D+ K IND L
Sbjct: 480 DSRDQLVRQARRDALTGLPNRATLRELIEQAVAERRA-----FALLFMDVDRLKDINDSL 534

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  + +R+   +     + R  G+ F  +L   ++  ++A     + +++  
Sbjct: 535 GHGAGDRLLREVAQRLSGCVGEDGTVTRYGGDEFVAMLGRPDDGDRLAALLRRIARALER 594

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ + + +  V  SIG A + +  + +  +LK+A+LAMY AK RG N VE F+ S   + 
Sbjct: 595 PVQIGDAQSRVQLSIGVACYPADGLDAETLLKHADLAMYQAKARGRNTVELFKPSFAEAA 654

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I     L  A+E+    L Y P I +    + G+EAL++W   + G +S + F+ +A
Sbjct: 655 ERRIALSHRLRAALEHDGFELAYQPQIDVRTSRVSGVEALLRWHDAEMGTVSPAIFIPLA 714

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E++ +I  +  ++L  +      W D    P + + +N++ + L   + C  ++ ++  +
Sbjct: 715 EDIGLIGQLGEWVLRSVCGQAKRWADTL--PALRVSVNVSPRQLASGDFCSVVRRVLDAS 772

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                +++L  +E  ++     +   L  L +IG+ + +DDFGT  S LSYL     D +
Sbjct: 773 GLPAHQLELEITEGALV--APGALPALRALNEIGVLIAIDDFGTGYSSLSYLRTFHADRL 830

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G        AI+R+I+ +A+++   ++A+ +     +  L   GC  +Q  H
Sbjct: 831 KIDMSFVRGIGTHCADEAIIRAILALARSLHFEVVAEGVERPDQLSFLVAEGCPIVQGYH 890

Query: 940 VASPLGFNSILKLLKE 955
               +    I   ++ 
Sbjct: 891 FCRAVPAAEIPAYVRS 906


>gi|90414349|ref|ZP_01222327.1| putative signal transduction protein [Photobacterium profundum
           3TCK]
 gi|90324573|gb|EAS41125.1| putative signal transduction protein [Photobacterium profundum
           3TCK]
          Length = 725

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 218/431 (50%), Gaps = 6/431 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    +   AF D LTG+ NR+   + L  ++  +    N    ++  D+D +K+IND 
Sbjct: 289 KQKTHELEKFAFYDYLTGLANRRLLNEHLEQVIQQTECCGN-SAALLCFDLDDFKRINDS 347

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD VL  ++ R+  ++   DI+ARL G+ F ++L +  ++      A  + + I+
Sbjct: 348 QGHDIGDCVLQQISHRLNSVVNKNDIVARLGGDEFTVLLSASYSASDAGRIAGQLIEVIS 407

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            PI L  +E++V+AS+G     S     S +L+NA++AMY AK  G  +   F  +  + 
Sbjct: 408 EPIFLNNKELSVSASVGITMIPSDGNDVSTLLRNADMAMYSAKKSGKRNYHFFNKALQKK 467

Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             D+V I+E L  A+   +  L Y P+      ++   EALI+W+HP+ G +    F+ I
Sbjct: 468 ALDKVSIEESLDTAISKKQFVLHYQPVFNFYSNKLCCYEALIRWNHPREGLLYPERFIGI 527

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   IK I  ++++ +   I   +         I +N++ +   D +L E ++ +I  
Sbjct: 528 AEESGKIKNIGYWVIQEVCNVIKMHQLHIGKRH-RIAVNLSPRQFNDPDLLENIRRIIRN 586

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  +++  +ES +M N E +   L + +++GI++ +DDFGT  S L+ L  +P D 
Sbjct: 587 VGIDARFLEIEITESTLMENVESAIYTLRQFKELGITVAIDDFGTGYSSLAMLKRLPVDK 646

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +           I++++I MA  ++ ++IA+ I  +     L + GCD+ Q  
Sbjct: 647 LKIDRSFVKDLDSNNSDQKIVQALISMAHTLQISVIAEGIETQEQFNLLQQYGCDFGQGY 706

Query: 939 HVASPLGFNSI 949
             + P+    +
Sbjct: 707 LFSRPVPITEL 717


>gi|319761875|ref|YP_004125812.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317116436|gb|ADU98924.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 887

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 148/679 (21%), Positives = 271/679 (39%), Gaps = 40/679 (5%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF--IWFIGLWMA 357
           + +       +A   L  +     +   +           L+ A  L++  +W       
Sbjct: 218 APWDAPERQGLAAPPLQEMGARGRHTGFWQARARLSGQPALVAARPLLYPDLWITASLPR 277

Query: 358 ITKRLDNDIIQPALVGGLVLIVILI---GFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            T          A+ GG +L    +   G     ++       Q +         AV   
Sbjct: 278 STALAAWKQDAAAVGGGALLFGACLVAAGILATVYLRRMHRARQSVAGAKATLDQAVGAM 337

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSM---HGPIRNWLPYIH--------INDRDN 463
                  D  R  V        +    +G++       R     +H         + R  
Sbjct: 338 VSGFVLLDPARRIVQWNRPFEEMFPWLAGTVAVGLPYRRVLETTVHYHLPGASAQDKRAW 397

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L      +    Q        +  F  +  R  P           + + +D+T+ +
Sbjct: 398 VERRLQQQRDPKGTHEQC-----LPNGHFIQITERATPE-------GGLVILFHDVTDLR 445

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   I   AF D LTG+ NR+  LDRL      +      R  V+ ID+D +K +ND L
Sbjct: 446 LAAAEIEQLAFYDQLTGLSNRRLLLDRLGQACAAAQRAGE-RGAVLFIDLDYFKTLNDTL 504

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMR 638
           G  +GD +L  + RR+   ++  D +ARL G+ F ++L         A       A  + 
Sbjct: 505 GHEMGDQLLQQVARRLQGCVRAGDTVARLGGDEFVVLLAGLPADAAEAALLARGVADKIV 564

Query: 639 KSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +  P  +  +    + S+G   +    + T+ E+LK A++AMY AK + G+ +  F  
Sbjct: 565 HLLGRPYQIAGQTYHGSFSVGATLFGELPQTTAGEVLKQADIAMYQAKAQRGSTLRFFEP 624

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S     S+R  ++ DL  A+   +  L   P        +VG E+L++W HP  G +  +
Sbjct: 625 SMQAAISERAQLEADLQQAIGMGQFLLHLQPQYDGA-GAMVGAESLLRWQHPVHGLVPPA 683

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE+  +I  I  ++L      +  WR   ++  + + +N++++    +   E + 
Sbjct: 684 RFIAVAEDSELIVPIGSWVLRGACELLARWRHAPHLRDLSLSVNVSARQFRQDGFAELVV 743

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+  T     R++L  +ES+V+ + E S   + RLR  G+   +DDFGT  S LSYL  
Sbjct: 744 RLLQDTGAPAHRLELELTESLVLEDVEDSIAKMHRLRVKGVRFAVDDFGTGYSSLSYLTR 803

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +     +     ++++I+ MA+N+E  ++A+ +  E     L R GCD
Sbjct: 804 LPLHRLKIDKSFVHHLGESHSDDVVVQTILGMARNLELEVVAEGVETEAQRAFLARHGCD 863

Query: 934 YIQDSHVASPLGFNSILKL 952
             Q   +A P+    +  +
Sbjct: 864 LYQGYLLARPMPVAQLEAM 882


>gi|253996596|ref|YP_003048660.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983275|gb|ACT48133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 623

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 217/448 (48%), Gaps = 11/448 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI  +K++ + I   A+ D LT +PNR   +DRL   L +SA   N    ++ ID+D +
Sbjct: 169 QDIARRKEAEDKIQHLAYYDLLTNLPNRLLLIDRLQHTLAMSARHQN-HGALLFIDLDHF 227

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIA 631
           K +ND  G +VGD +LV + +R+   ++  D LARL G+ F +IL   +        +  
Sbjct: 228 KTLNDTKGHSVGDLLLVEVAKRLQTCMREGDTLARLGGDEFVVILQDLSEDSSQAAVQAE 287

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +  +I +P  L       + S+G   + + + T  E+LK A++AMY AK  G N 
Sbjct: 288 TVCAKIISAINLPYYLDSYLYHSSTSVGVCLFRNQEFTVDELLKRADIAMYQAKSAGRNT 347

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +  +   +         DL LA++ ++  L Y   +      + G EALI+W HP+ 
Sbjct: 348 QRFYDPTMQAALEARAALESDLRLAIKKNQFRLYYQMQVDH-SGNVHGAEALIRWQHPQK 406

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +F+ + EE  +I  I  +++E     I  W        + + +N+++    D  
Sbjct: 407 GLVPPLQFIPLTEETGLIIPIGHWVMETACAQIKRWESDPLTRNLQVAVNVSACQFHDPS 466

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E    ++S+    P  +KL  +ES+V+ N E + + +  L+  G+  ++DDFGT  S 
Sbjct: 467 FVERAIEMLSRHKIKPGNLKLELTESLVLDNVEEAIMKMQALKSYGVLFSMDDFGTGFSS 526

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL  +P D +K + S +       +   ++++II MA N+   +IA+ +  E   + L
Sbjct: 527 LSYLTKLPLDQLKIDQSFIRNMCMNNRDAVVVQTIIGMANNLGIEVIAEGVESETQREFL 586

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  C+  Q    + PL  ++    L++
Sbjct: 587 EQNKCNLCQGYLFSQPLPIDAFENKLRQ 614


>gi|121594417|ref|YP_986313.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidovorax sp. JS42]
 gi|120606497|gb|ABM42237.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax sp. JS42]
          Length = 900

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 251/604 (41%), Gaps = 23/604 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++  A        V        + +      ++ +    +     +    D++++ D   
Sbjct: 304 LLGAAFSLLAGWFVGQQVNARQRAMALAREMTRELRRTRDELEATLNAVPDLLFEVDAQG 363

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                    A ++G  + ++ G  R     +           LD    Y  G  +     
Sbjct: 364 GIHHYRSARADLIGTRAQALVG--RTLGDVLPPAAAAECMAALDEAAEY--GYSEGRQYS 419

Query: 486 RAADNQFHWMIIR------IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
                  HW  +         P + +      +I ++ D+T + ++   +   A+ D LT
Sbjct: 420 LDIGGSQHWFELSVACKQGGAPQTGAGPGQRHFIALSRDVTRRHEAEAAMYRLAYFDALT 479

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+  L RL   L  +     +   +  ID+D +K+IND  G  VGD +LV +  R+
Sbjct: 480 GLPNRRLLLQRLQDALVTAQQQGGM-GALFYIDLDNFKEINDARGHGVGDGLLVQVAARL 538

Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654
            +     + +ARL  + F +++    +       +    A  +R+ +  P +L       
Sbjct: 539 QDAAGPQETVARLGSDEFVLLVPRLGDGPSVAREQACRRAQQLRECLDAPYDLGGVHYGS 598

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           T SIG   +  +     ++L+ A+ AM+ AK RG N V  F         +R+ + +DL 
Sbjct: 599 TGSIGVTLFPKNGEGVEDLLREADTAMFCAKDRGRNQVCFFEQDMHAAAQERLALLQDLK 658

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            AV+N  L     P +     +++G E L++W HP+ G +  ++F+ +AE+  +I  +  
Sbjct: 659 SAVDNDALLTYAQPQVDAA-GQLIGAELLLRWPHPQRGFVPPAQFIPVAEQAGLIVRMGA 717

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++++    +     Q     + I +N++ +     +  E ++A +  T    + + L  
Sbjct: 718 RVIQQACATLAELHQQGR--ALSISVNVSPRQFRQADFVEQVRAALQSTGAPAALLTLEV 775

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +ES+++ N + +   +  L  +G+  ++DDFGT  S L+YL  +P   +K + S +    
Sbjct: 776 TESLLVENWQDTARRMHELVALGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 835

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           S     AI+++I+ +A+++   ++A+ +        L    C  +Q      P      L
Sbjct: 836 SDANDAAIVQAILSVARHLRLRVVAEGVETRQQADFLIAHHCHGLQGYLFGLPQPLRDWL 895

Query: 951 KLLK 954
             LK
Sbjct: 896 AGLK 899


>gi|296446280|ref|ZP_06888226.1| diguanylate cyclase/phosphodiesterase [Methylosinus trichosporium
           OB3b]
 gi|296256181|gb|EFH03262.1| diguanylate cyclase/phosphodiesterase [Methylosinus trichosporium
           OB3b]
          Length = 704

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 145/694 (20%), Positives = 268/694 (38%), Gaps = 42/694 (6%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           +W  +        +  + +   + FY      ++    +                     
Sbjct: 29  QWEFRYALGGIGFMTAVGVTAAVLFYKHHDEMTVYYGIVIMTACAGAL----AARNSGSP 84

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLAT 393
            ++   A            +A+T     +     L   LVL  + +  T      ++ A 
Sbjct: 85  RIVFGQAI------GTLAPLAVTCLFYYNSWYWGLTAILVLFFVSVKSTTKFLHANLEAA 138

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               +       R   A+      +   +  +        +    GL +      +R   
Sbjct: 139 LRNGRDANIQRRRFKSALNSMSHGLCMGNADQSLTVVNHRLVEFFGLGADEPPQQLRALA 198

Query: 454 PYIHI------NDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             I        +DR  F    +S     +      E   R  D          R     N
Sbjct: 199 ARIAEATDMPQDDRRAFVEQWESHAALPKTSVFSRELGDRIYD---------FRCEPADN 249

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G    ++ +  D+TEQ+++   I   A  D LT + NR  F  RL   L        L  
Sbjct: 250 G---AFVTVVEDVTEQRRAAREIERIAHFDTLTNLANRFQFQQRLERDLRHIHKR-GLCL 305

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ ID+D++K++ND LG ++GD +L ++  R+ + ++  D++AR  G+ F +++     
Sbjct: 306 ALLSIDLDQFKEVNDTLGHSIGDLLLRAVADRLRDCVRTVDMVARFGGDEFCVLMHPTAE 365

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  + +++  P  +    I + AS+G         T   +LK  +LAMYH+K 
Sbjct: 366 MPPAEALAHRVIETLGRPYTVEGHTIVIGASVGLTVAPRDAATVEGLLKCGDLAMYHSKA 425

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G    + F  +   +   +  I+ DL  A+    L + Y PI    D+ +   EAL +W
Sbjct: 426 SGRRRAQWFDTAMEDALLRKRRIERDLREALRTDALDIHYQPIFDARDQSVSSCEALARW 485

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G +S + F+ IAEE  +I  +  ++L    RD   W +      + + +N + K 
Sbjct: 486 RHPQLGAVSPATFIPIAEETGIIVELGEWVLRHACRDARRWPEL-----VRVAVNFSCKQ 540

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L   ++A +      P R+++  +ES +M + E +   +  LR +G+ L+LDDFG
Sbjct: 541 FQQPDLVARVEAALCAASLDPGRLEVEITESTLMQDTEDAAAKIAGLRALGVRLSLDDFG 600

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P D VK + S +     + K +AI+ ++  +   +   ++A+ +    
Sbjct: 601 TGFSSLAYLNSFPVDKVKLDRSFILQLSQSPKALAIVGAVAQLTDELGIELVAEGVETGE 660

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  L       IQ    + P     I  L   R
Sbjct: 661 QLALLRGKNVHLIQGFLFSKPKPREEIDLLFAGR 694


>gi|239941499|ref|ZP_04693436.1| hypothetical protein SrosN15_10918 [Streptomyces roseosporus NRRL
           15998]
 gi|239987963|ref|ZP_04708627.1| hypothetical protein SrosN1_11697 [Streptomyces roseosporus NRRL
           11379]
 gi|291444943|ref|ZP_06584333.1| sensory box/GGDEF family protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347890|gb|EFE74794.1| sensory box/GGDEF family protein [Streptomyces roseosporus NRRL
           15998]
          Length = 639

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/585 (23%), Positives = 270/585 (46%), Gaps = 29/585 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            I S+      A   +   +   D     V     +  +LG  +  + G     L  +  
Sbjct: 53  SIASELRDYRAAFNAATLPMGVVDGRGHVVRANEALGGLLGTPAAVLAGRQACELLDLAT 112

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIAN 517
           +DR          +  RR R +   R++  D +  W  I + PM+ +   +  R +    
Sbjct: 113 DDRT--WHAYREVLLGRRSRFRCTRRLKHPDGRSLWAEITVVPMTGASAAESARVLLTVA 170

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-------TDDNLRPTVMV 570
           D++++++  E +      D +T +PNR  F +RL + L+          +  + R  +  
Sbjct: 171 DVSDRRELQERLRHLQMHDPVTRLPNRTLFFERLASTLETPPYQDDSLPSRQHARIGLCY 230

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--------ILARLSGNRFGIILI 622
           +D+D +K IND LG   GD +L ++  R+ +  +           ++ARL G+ F I++ 
Sbjct: 231 LDLDGFKAINDTLGHRTGDRLLAAVAARLTDCAENDASRNAGGSRLVARLGGDEFAILVE 290

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               + ++ D A ++  ++  P +L  + ++V+ASIG    T++  + + +++ A+  +Y
Sbjct: 291 DSAGTQELTDLARSVLAALQQPFDLAGQRLSVSASIGVVERTAAGTSPTGLMQAADTTLY 350

Query: 683 HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G      F             +   L  AVE  E  L Y P++ + D  + G+EA
Sbjct: 351 WAKADGRARWTLFDPERNAHRMTRQSLSSTLRPAVERGEFTLEYQPLVGMADGVLRGVEA 410

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILIN 799
           L++W+HP++G +  + F+ IAEE   I  +  ++L    R    W+ D  + PP+FI +N
Sbjct: 411 LVRWNHPQFGVLPPNRFVQIAEEDGSIVQLGRWVLRTACRQARRWQLDHPDEPPLFISVN 470

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +A + + D++L   +  ++++T  +P  ++L  +ES VMG+  R    L  L  +G+ + 
Sbjct: 471 VAVRQVWDSDLVADVAQILAETELAPGLLQLELTESAVMGSGGRPLRALQALSDMGVRIA 530

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNIET 911
           +DDFGT  S L+YL  +P   +K +G+ + G         +     I+ +++ +A  +  
Sbjct: 531 IDDFGTGYSNLAYLSRLPVSVLKLDGAFVKGFRYEDGTHPSPADETIVEAMVQLAHRLGL 590

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           T+ A+ +      + L R+GCD  Q    +  +    I  L+  R
Sbjct: 591 TVTAECVETAGQAERLRRIGCDTGQGWLYSRAVAPEQIAGLIGSR 635


>gi|182701591|ref|ZP_02612364.2| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
 gi|182670760|gb|EDT82734.1| putative diguanylate cyclase [Clostridium botulinum NCTC 2916]
          Length = 843

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 240/452 (53%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++   + +N +  
Sbjct: 398 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTIN---SYENEKFA 454

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 455 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 513

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 514 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 573

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 574 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 633

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 634 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 691

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 692 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 751

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 752 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 811

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 812 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 843


>gi|218245687|ref|YP_002371058.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|257058734|ref|YP_003136622.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|218166165|gb|ACK64902.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|256588900|gb|ACU99786.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 593

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 135/436 (30%), Positives = 235/436 (53%), Gaps = 5/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +K+ + +  +A  D LTG+PNR  FL+R+   L  +  + +    V+ +D+D++K +N
Sbjct: 154 ALEKAQQKLSYDALHDPLTGLPNRSLFLERVGRSLQRAQEEKDYSFAVLSLDLDRFKVVN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G  VGD +LV+++R +  L+   D +ARL G+ F I+L    +  +       ++K 
Sbjct: 214 ESDGHRVGDRLLVAISRTLETLVGSTDTVARLGGDEFAILLEKIADVNEAIRTTQTIKKQ 273

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  L EREI  + SIG    +       E+L++A++AM  AK +G    E F     
Sbjct: 274 FVSPFQLTEREIFTSPSIGLTFSSPKYKHPEEILRDADIAMARAKQKGRGRYEVFDEEMH 333

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + ++ DL  A+EN E  + Y PI+ L   +IVG EALI+W HPK G IS  EF+
Sbjct: 334 TQALKLLNLETDLRRAIENQEFLVYYQPIMALEKTKIVGFEALIRWQHPKKGFISPGEFI 393

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817
            IAEE  +I  I   +L+   + + +W+++      + I +N++S+ L + E+ + +   
Sbjct: 394 PIAEETGLIIPIGQIVLKEACQQLKTWQEKLPKAKNLTISVNLSSQQLKEPEILQHIDHS 453

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++ T   P  +KL  +ES++M N + +  LL +L++  I ++LDDFGT  S LSYL   P
Sbjct: 454 LNVTGLQPESLKLEITESLLMENADVATTLLRQLKERKIQISLDDFGTGYSSLSYLHRFP 513

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +      E+ + I++SI+ +A N++  ++A+ I  E  +  L  + C++ 
Sbjct: 514 VDTLKIDRSFVNCIGKPEENLTIIQSIMALAHNLDMDVVAEGIETEKQLTFLKFLECEFG 573

Query: 936 QDSHVASPLGFNSILK 951
           Q    + PL  + +  
Sbjct: 574 QGYFFSKPLPSHEVEN 589


>gi|322804630|emb|CBZ02182.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Clostridium botulinum H04402 065]
          Length = 447

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++     +N +  
Sbjct: 2   EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 58

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 59  VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 117

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 118 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 177

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 178 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 237

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 238 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 295

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 296 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 355

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 356 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 415

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 416 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 447


>gi|153933976|ref|YP_001382759.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934947|ref|YP_001386310.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
 gi|152930020|gb|ABS35520.1| putative diguanylate cyclase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930861|gb|ABS36360.1| putative diguanylate cyclase [Clostridium botulinum A str. Hall]
          Length = 892

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++     +N +  
Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 503

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 562

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 682

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 741 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 860

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 861 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 892


>gi|148378360|ref|YP_001252901.1| signaling protein [Clostridium botulinum A str. ATCC 3502]
 gi|148287844|emb|CAL81910.1| putative signaling protein [Clostridium botulinum A str. ATCC 3502]
          Length = 895

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++     +N +  
Sbjct: 450 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 506

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 507 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 565

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 566 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 625

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 626 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 685

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 686 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 743

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 744 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 803

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 804 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 863

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 864 LEILQELGCDFIQGFYISEPLPIKTFQSKFIR 895


>gi|120611161|ref|YP_970839.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120589625|gb|ABM33065.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
          Length = 962

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/598 (23%), Positives = 260/598 (43%), Gaps = 24/598 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
              AL   L    I +  T  Q  LA     +  + +  +     +    D++ + D   
Sbjct: 362 WLGALFSVLAGWFIAMQATGHQRALALAQSMTSELRTARDNLEGILQAVPDLLVELDAGG 421

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                    + +    S +  G  R     +       F   L      +   L  ++  
Sbjct: 422 RIHYHRSARSDLSAEPSQAFEG--RMLAEVLPPGVASEFMQALREA-ESQGVSLGRQYHQ 478

Query: 486 RAADNQFHWMIIRIRPMSNSN------GDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             A  Q  W  + +      +      G   RY+ +A DIT ++ +   +   A+ D LT
Sbjct: 479 DTAMGQ-RWFELSVARRLGVDSAAGQGGGASRYVALARDITARRDAEAAMHRMAYYDALT 537

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+   ++L   LD +         +  ID+D +K++ND  G A GD +LV + RR+
Sbjct: 538 GLPNRRLLFEQLQDALDQA-RSGGRIGALFFIDLDNFKQLNDARGHAAGDRLLVQVARRL 596

Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654
             LL+    + R+ G+ F +++    N            A  +R+ +  P +L     +V
Sbjct: 597 ERLLQGFGSVVRIGGDEFVVLIPRIANGMQAGVDAAGAMAARLREGMEAPYDLGSTYYSV 656

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           TAS G   +  +  T  ++L+ A+ AMY AK  G + V  F         +R+ +++DL 
Sbjct: 657 TASTGVTLFPKAGETVEDLLREADTAMYRAKSSGAHRVRFFEADMQAAAQERLSLEQDLA 716

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ +  L +  HP +   D  + G E L++W HP  GN+S + F+ IAEE  +I  +  
Sbjct: 717 QAIADDALEIHIHPQVD-RDGAVCGGELLLRWRHPAHGNVSPARFVAIAEESGLILRLGA 775

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++ R    +           + I +N++++     +    ++  ++ +    SR+ L  
Sbjct: 776 RVIRRACDALAQLHAAGLD--MTISVNVSARQFRQEDFVAYVRDALAYSGAPASRLILEV 833

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E++++ N + +   +  L + G+  ++DDFGT  S L+YL  +P   +K + S +  + 
Sbjct: 834 TETLLVENWQDTARRMAELVRFGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 893

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                 AI+R+I+ MA+++   ++A+ +  E   + L R GCD +Q    A PL    
Sbjct: 894 VNPNDAAIVRAILSMAQHLRLRVVAEGVETETQAEFLARHGCDAMQGYLYAHPLPLKE 951


>gi|75910622|ref|YP_324918.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Anabaena variabilis ATCC 29413]
 gi|75704347|gb|ABA24023.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Anabaena variabilis ATCC 29413]
          Length = 880

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 234/440 (53%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++  E I   A  D LTG+PNR  F + L   L  ++        VM +D+D++K IN
Sbjct: 437 QRQQVEEKIRYQALHDLLTGLPNRLLFNELLAKALANASRSQQ-SLAVMFLDLDRFKVIN 495

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG ++GD +L S+ +R+ + L+  D ++R  G+ F I+L   +   ++   A  + K+
Sbjct: 496 DTLGHSLGDRLLKSVAQRLCDCLRSGDTVSRWGGDEFTILLPHISYIEEVTQAAYRILKA 555

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +    +L   E+ V+AS+G A        +  ++K+A+ A+YHAK  G N+ + +    S
Sbjct: 556 LEEVFHLDGHELYVSASLGIALLDHHSPDAEALIKHADAALYHAKDEGRNNYQFYTTSLS 615

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + + +++ L  A+E  EL + Y P + ++  +I G+EAL++W HP+ G ++ S F+
Sbjct: 616 GKTPELLTLEKSLRYALEKQELTVYYQPRVNILTGQITGMEALLRWQHPEMGIVAPSIFI 675

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  ++L        +W++    PP+ + +N++ K      L E + A++
Sbjct: 676 PIAEETGLIIPIGEWVLRTACMQNRAWQEAGL-PPLQMAVNLSPKQFRQPNLLEIVSAIL 734

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T  +P  ++L  +ES  + + + +R +L  L+++G+ + +DDFGT  S LS L  +P 
Sbjct: 735 AETSLAPEFLELEITESTAIEDIDFTRSVLENLQQMGVDIAIDDFGTGHSSLSRLQLLPL 794

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +GS +   T       I+++I+ + +++   + A+ +  + ++  L  + C  +Q
Sbjct: 795 HNLKIDGSFIKALTTDSKVAHIVKAIVTLGRSLGLRLTAEGVEKQEELDFLKSINCQDVQ 854

Query: 937 DSHVASPLGFNSILKLLKER 956
                 PL      ++L+  
Sbjct: 855 GFLFYKPLSAEKATEILQSE 874


>gi|307609096|emb|CBW98536.1| hypothetical protein LPW_03661 [Legionella pneumophila 130b]
          Length = 740

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 143/568 (25%), Positives = 267/568 (47%), Gaps = 22/568 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453
           ++ +          +  S D +   D+    V        +  +    M     + L   
Sbjct: 180 TESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIMKKTSESQLIQY 239

Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                ++              +     ++ Y FR    + +   +    +P        +
Sbjct: 240 MSTQLLNSEQHAQHVKEFSIHIDDSSIQI-YHFR----NGKV--VECCSKPHR-VGPQTV 291

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +    DITEQ +  E +   A  D LT +PNR   +DR+   +   A    ++  ++ 
Sbjct: 292 GRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARH-KMKFAILF 350

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            D+D++K IND L    GD +L ++ +R+  L++  D LARL G+ F ++  S N+  +I
Sbjct: 351 FDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQI 410

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  + KS   P ++ ER+I +  SIG + + +   T + +L NA++AMY AK RGGN
Sbjct: 411 AGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGN 470

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +    +   + +  ++ DL  A+ + E +L+Y P   +   EI  +EALI+W+HP+
Sbjct: 471 QFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQ 530

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I   +F+  AE   +I  I  ++L    + I +WR    +P I +  N+ASK L   
Sbjct: 531 KGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGTWR-TMGLPEIRVACNVASKQLRQR 589

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    ++ L+ +    P  ++L  +E+V++   +  +  + +L+ +G+ + LDDFGT  S
Sbjct: 590 DFPAMVEDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNS 647

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L  +  D++K + S +     +    AI+ +II +A+++   IIA+ +  +  +K 
Sbjct: 648 SLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKF 707

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L +  C+ IQ   ++ P+    I KLL+
Sbjct: 708 LKKRRCNDIQGFLMSKPIPPEEIEKLLQ 735


>gi|226947588|ref|YP_002802679.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum A2 str. Kyoto]
 gi|226842632|gb|ACO85298.1| multisensor diguanylate cyclase/phophodiesterase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 843

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 239/452 (52%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   ++     +N +  
Sbjct: 398 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTINN---YENEKFA 454

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 455 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 513

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 514 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 573

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 574 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 633

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 634 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 691

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 692 KDKNFVDNVLNILRTTKLKPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 751

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 752 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 811

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  +GCD+IQ  +++ PL   +   K ++
Sbjct: 812 LEILQELGCDFIQGFYISEPLPIKNFASKFIR 843


>gi|209964794|ref|YP_002297709.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209958260|gb|ACI98896.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 609

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 156/502 (31%), Positives = 266/502 (52%), Gaps = 12/502 (2%)

Query: 463 NFRTILDSFVGYRRGRL------QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +R  L   V             ++EFR+  A     WM++R   + + NG  LR  G  
Sbjct: 104 KYRAALHDHVSRAPEPFGALHQLEHEFRMLHASGAECWMLVRGAAIRDGNGTALRMAGSM 163

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT +K +   +L +AF D LTG+ NR   LDR+   +D      + +  +++ D+D++
Sbjct: 164 SDITARKHAEAQLLFDAFHDGLTGLSNRHLLLDRIGQAIDRRRHPTDGQFALILFDLDQF 223

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG A+GD+VL  + RR+GE  +  D +AR S + FG+++    +       A  
Sbjct: 224 KAINDSLGTALGDEVLRIVARRLGEARRSGDTVARTSVDEFGVLMDGVADVKAAMSGAER 283

Query: 637 MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +  ++  PI L   REI +T S G A   +    +++ML++A LAM+ AK  G + +E F
Sbjct: 284 LAAAVCRPITLPDGREIVLTCSAGLAMSNTGYAAATDMLRDASLAMFRAKAAGRSRIEVF 343

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R+  + DL +A+++ +L+LVY PIIR+ +  I G EAL++W HP+ G I 
Sbjct: 344 DDALRERALSRLRTESDLRVALDSDQLFLVYQPIIRMQNGSIAGFEALVRWSHPERGTIL 403

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AEE  +I  +  + L+  A  I  WR +     +F+ +N++ + L+D+++   
Sbjct: 404 PGEFIALAEETGLILRLGRWALKEAALQIKDWRRRTGR-DLFVSVNVSGRQLMDDDMAAA 462

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++ +T   P  +KL  +ES+++ +  R   +L  +RK+G+ L LDDFGT  S LSYL
Sbjct: 463 VAQVLGETGVEPRALKLEITESLLLDDTARCVQMLHDIRKLGVRLCLDDFGTGFSNLSYL 522

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P DT+K + S +  +T  ++R  I R I  +A  ++  ++A+ +  + +   L  + 
Sbjct: 523 HSYPVDTLKIDRSFVRAATAGDRRAEIARIITMLAAALDLEVVAEGVERDAEAAFLRDLH 582

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C Y Q    A P+      + L
Sbjct: 583 CQYAQGYFFARPMPPEEAERHL 604


>gi|152997984|ref|YP_001342819.1| PAS/PAC and GAF sensor(s)-containing diguanylate
            cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150838908|gb|ABR72884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Marinomonas sp. MWYL1]
          Length = 1018

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 166/789 (21%), Positives = 319/789 (40%), Gaps = 41/789 (5%)

Query: 202  LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
            + I  T       + +           +    +  G ++ LV + +   ++    S I  
Sbjct: 227  MIILNTFISAAWGALIAAGINYFRDGYIEVGFVLNGTIAGLVGITASCHVVSPGASVIIG 286

Query: 262  SSSLIIFLFMYLHWNRW-----HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316
            S S ++  F  L   RW        V    F+GI     +        +         L 
Sbjct: 287  SVSGVVVYFGSLLMERWRLDDALDVVPAHLFAGIWGTLSVALFGQTDKIDNGLGFLGQLG 346

Query: 317  SIVLYYTYFIIYHGMKGYERAVLL-------------------IPAWILIFIWFIGLWMA 357
               L       Y  + GY    LL                           ++ +   M 
Sbjct: 347  VQALGIVVIGFYCFVVGYSCMWLLNRFMPLRASKEQEEQGLNVAEHRATTELFDLLTSMQ 406

Query: 358  ITKRLDNDIIQPALVGGLVLIVIL------IGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               + + D  +P        +  +      +   V   +               R+S  +
Sbjct: 407  YQ-QNNADFSKPVPEEPFTEVGQIARKYNQVIDRVSTEIAQRDDALMRFQESEMRKSAIL 465

Query: 412  LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
              S D +   +     +   P      G     + G     L +I   DR      L+S 
Sbjct: 466  NSSMDCIVTINRFGSVIEFNPAAERTFGCLKKQVEGKSFIGL-FIREEDRKKIFESLNSG 524

Query: 472  VGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 G +   +  FR++ + N      I I   +  +     Y     D+T   K  E 
Sbjct: 525  FSTSNGLILNRRNPFRLQRSPNNDFPAEIAITKANADSSQESEYTLHIRDMTRHVKLQER 584

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A+ D LT + NR   +D L + L  + T       ++ +D+D +K IND LG   G
Sbjct: 585  LKFLAYSDPLTSLYNRTYLMDSLISALLFA-TKQKTSVGLLFLDLDNFKIINDTLGHKAG 643

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D++L  + RR+  +    D++AR  G+ F  ++  + N  ++A  A  + +++  P+NL 
Sbjct: 644  DELLCEVARRLIAVSDQFDVIARWGGDEFVFMMTKDVNESRLAKRAQQILEAMRAPVNLN 703

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI- 707
            E+  T+  SIG A      + +  +++ A++AMY AK +G ++ + F             
Sbjct: 704  EQYFTIPTSIGIAYTGEQSLDADRLIQQADIAMYWAKEKGRDNAQFFTPEMSNIVTKKFG 763

Query: 708  -KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             ++++  A+ + +  LV+ P + +  E I+GLEALI+W+HP  G I  ++F+ +AEE  +
Sbjct: 764  FEKEINDALASEQFSLVFQPKVFMEKENILGLEALIRWNHPTKGLIPPADFIPMAEESNL 823

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  I+ +++++      +WRDQ     + I +N++ + L+ + L   +   ++       
Sbjct: 824  ISRIDEWVIDQALLQQKAWRDQGLRI-VPIAVNLSGRHLVSDSLVSYISQKLNAYGIEGC 882

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             +++  +E V++ + +R   ++  L+++ I +++DDFGT  S LSYL  +P D +K + S
Sbjct: 883  LLEIEITEGVLLQDIQRCIEVMAELKELDIRISVDDFGTGYSSLSYLKRLPLDILKIDQS 942

Query: 887  LMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +       +   I  +I+ +A+N+E  I+A+ +        L  +GC+  Q  +   P+
Sbjct: 943  FVEECDRHIEDAKICETIVHLARNLELVIVAEGVETAPQADTLKSLGCEIFQGYYFHKPM 1002

Query: 945  GFNSILKLL 953
                I KLL
Sbjct: 1003 VSADIAKLL 1011


>gi|34497763|ref|NP_901978.1| hypothetical protein CV_2308 [Chromobacterium violaceum ATCC 12472]
 gi|34103619|gb|AAQ59980.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 679

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 224/435 (51%), Gaps = 5/435 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E++++ E +   A  D LTG+PNR  F  RL+  L +       +  ++ ID+D++K 
Sbjct: 232 IQERRRAEERLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDL-PPYKLAMLFIDLDRFKD 290

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  +GD +L ++  R+ + ++  D+LARL G+ F  +L S  N    AD A  + 
Sbjct: 291 VNDTLGHYIGDQLLNAVAARLADSIRAEDMLARLGGDEFICVLESIENRDMAADVAGKLL 350

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                P  +   ++ ++ASIG +   +       +L++A++AMY AK+ G N  + +   
Sbjct: 351 ALFRQPFCINGNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAGRNRCQHYSPQ 410

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     ++  L  A++N E+ + Y P +  +  ++VG EAL +W HP  G +  + 
Sbjct: 411 MSEDAEQRVVLERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPAR 470

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I A+   +LE+  R + SW +     P  + +N++++ L   +  + +  
Sbjct: 471 FIPVAEECGLIVALGEQILEKSLRQLASWHEAGFPLP-SVSVNLSARQLERQDFPQHVAR 529

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +    P  ++L  +ESV+M   E +  +L  LR  GI L++DDFGT  S LSYL  +
Sbjct: 530 LLKRYRLEPRHLELEITESVIMA-TEDAVNILAELRAQGIRLSIDDFGTGYSSLSYLRQL 588

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P   +K + S + G  +   AI+ +I+ ++ ++    +A+ +     ++ L   GC  IQ
Sbjct: 589 PVQVLKVDRSFILGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLRSAGCHIIQ 648

Query: 937 DSHVASPLGFNSILK 951
               A+PL   S   
Sbjct: 649 GFLYAAPLPAESFAD 663


>gi|157376349|ref|YP_001474949.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157318723|gb|ABV37821.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Shewanella sediminis
           HAW-EB3]
          Length = 951

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/556 (22%), Positives = 249/556 (44%), Gaps = 15/556 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIH-INDR 461
            +  +     +   +   D     +      + I G A   + G   R      H     
Sbjct: 387 LKHAASVFTHTNQGITITDTSGVIIEVNDAFSAITGYARDEVIGQNPRVLQSGRHSPEFY 446

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 L +      G    E   +  +++ +  ++ I  + ++ G +  Y+ + NDIT 
Sbjct: 447 REMWATLQA-----DGHWTGEIWNKRKNDEIYPEMLTISAVLDATGKVQNYVALFNDITA 501

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+  E +   A  D LT +PNR    DRLT  +            V+ +D+DK+K +ND
Sbjct: 502 IKEHQEQLERIAHYDTLTNLPNRTLLADRLTQSMVQVRRR-KSSLAVVFLDLDKFKDVND 560

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD +L+ ++RR+ E L+  D LAR+ G+ F  +L+              + ++ 
Sbjct: 561 AYGHDVGDKLLIVISRRLKEALRDIDTLARIGGDEFVAVLMDIEKGEDCEPVLERLLEAA 620

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +    + V+AS+G A +    I + ++L++A+ AMY AKH G N    F  +   
Sbjct: 621 SGSVTVEGIMLKVSASMGVAIYPQDGIDADQLLRHADQAMYVAKHEGKNCYHLFDTAQNI 680

Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + ++     + +  A++ SE  L Y P + +    I+G EALI+W  P+ G +  +EF+ 
Sbjct: 681 AMQIRHDDLQSMRKALDQSEFVLYYQPKVNMRTGAIIGAEALIRWLSPERGLVGPNEFLP 740

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   +   +  ++++     I +W++      I + +N+++  L  +     + AL+ 
Sbjct: 741 AIENHVISIEVGEWVIDTALGQIAAWQELGLD--IPVSVNVSALQLQHDGFVTCLAALLE 798

Query: 820 KTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +PS +++   E+ ++ +  +    +    ++G++  LDDFGT  S L+YL  +P 
Sbjct: 799 AHPEVAPSSLEIEVLETSLIDDVMQVSATMLACIELGVTFALDDFGTGYSSLTYLRRLPA 858

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +     T   +AI+  ++ +AK+ +  +IA+ +        L + GC+  Q
Sbjct: 859 SLIKIDQTFVLDMLTTPDDLAIVEGVVSLAKSFKHKVIAEGVETIAHGTTLLQTGCELAQ 918

Query: 937 DSHVASPLGFNSILKL 952
              +A P+    I + 
Sbjct: 919 GYGIARPMMAKDIPEW 934



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 32/282 (11%)

Query: 261 LSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL 320
           + ++L + +           +        +  + I+  +  +  +V +    +   S+  
Sbjct: 14  VLATLWVVIIGVYLLKLRQLRAEGAVSRTVTVLLIILAIDAFRTIVESVYFGLYFNSLYG 73

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
                I     +    A+L+IP  I IF   + + + I + +  DI              
Sbjct: 74  LIPKSIADLLSQ---PALLIIPKLINIFAGVLVILLLIKRWVPRDI-------------- 116

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
                  + +LA         ++    +    G  D     D  R+ V+       ++G 
Sbjct: 117 ---HERKEALLALHAAKSASVNNENLFNSIFNGVTDACIFADSNRNIVSINQGFELMMGY 173

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRT---ILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
               + G        I+ +D +  R      +     +    +  +R    D        
Sbjct: 174 GIDELEGKTA---SIIYESDEEYERQGRIHFNLAAKEKVTPYEANYR--HKDGSIIVGET 228

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS----LEGILCNAFQ 535
               +   +  IL Y+G   D+T++KK+     E     +  
Sbjct: 229 SRIVIRTLDDQILGYVGFIRDVTDRKKATTALQESTAMLSHH 270



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I+ V      +  +       S  V  +      WD   + +        I G +   + 
Sbjct: 247 IRDVTDRKKATTALQESTAMLSHHVQNTPLGCISWDSNLNCIEWNKSAEKIFGYSPDEVI 306

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G     +  +    RD+   I        +  R   E      D +         P+   
Sbjct: 307 GHALLEI-LVSEEIRDDINNIGKILFKGNKCTRSSNE--NITKDGRTIICEWYSTPIVGV 363

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA 533
           NG+++    +  DITE K++   +   A
Sbjct: 364 NGEVIGVTSLILDITESKQAELKLKHAA 391


>gi|34498408|ref|NP_902623.1| hypothetical protein CV_2953 [Chromobacterium violaceum ATCC 12472]
 gi|34104262|gb|AAQ60621.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1390

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 138/566 (24%), Positives = 261/566 (46%), Gaps = 15/566 (2%)

Query: 397  SQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-P 454
             + +F   ++++ AV   S + +   +            + I G ++    G   + L  
Sbjct: 818  ERKVFEQTQKEAAAVFDSSYEGILMVNPDGVITKVNNAFSRITGYSAEEAIGQKPSLLAS 877

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                     +  + +S  G+     + E   R    + +  ++ I  + +  G +  YIG
Sbjct: 878  GKQP--ISFYEELWNSVKGH--DFWRGELWNRRKSGELYAELLSISVVRDEQGQVQHYIG 933

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            I +DIT+ K+    +   A  D LTG+PNR+   DRL   +  +         V  +D+D
Sbjct: 934  IFSDITQLKQHEAELDRVAHYDPLTGVPNRRLLSDRLRQAIVRANRSGR-SCAVCFLDLD 992

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K +ND  G AVGD +LV+++  +  +L+  D LARL G+ F ++L    +  +     
Sbjct: 993  GFKAVNDKYGHAVGDQLLVTVSNNLKSILRGDDTLARLGGDEFVVLLSEVGSPEECMLVL 1052

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              +  + + P+ + + E+ VTASIG + +    +    +L++A+ AMY AK  G N  + 
Sbjct: 1053 DRVLATASRPMPVGDAEVGVTASIGVSLYPQDNVDPDTLLRHADQAMYLAKDAGKNRYQL 1112

Query: 695  FRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            F   + R   +     E L  A+ + E  L Y P++ L   EI+ +EALI+W HP+ G +
Sbjct: 1113 FDPENDRKAQEHRQFLELLRQALVHDEFALFYQPVVDLQSGEIISVEALIRWRHPRRGLL 1172

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            + +EF+       +  A  L++L+     +  W +      I I  N+++  LL  +  +
Sbjct: 1173 APAEFLPHLSGNELEAAFGLWVLDAALSQVSRWAEAGFH--IKISTNVSTNYLLRTDFSQ 1230

Query: 813  GMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++ +     P  ++L   ES   G+ E++  +L R R++G+   LDDFGT  + L+
Sbjct: 1231 QLSTVLGRYPNVPPWHLELEIVESAS-GDVEQTIRVLQRCRELGVHFALDDFGTGHASLT 1289

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            +L  +P DT+K + S +     ++    I+  +I +A       IA+ +        L  
Sbjct: 1290 HLRRLPVDTLKIDNSFVHDMIGSQDDRRIVEGVIELASIFARKAIAEGVETMEHAALLRS 1349

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKE 955
            +GC Y Q   +A P+  + ++   + 
Sbjct: 1350 LGCHYAQGFGIARPMEADKVMDWCQR 1375



 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 2/152 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +       Q +     + +  + GS    WDW++  +R   +P   ++LG   G MH 
Sbjct: 684 RDLTEQHRAEQELRDRERQLARVIAGSDQGFWDWNLETNRFQVSPRWESMLGYGPGEMHI 743

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506
              +W  ++H  D +  R  +   +       + E R R     + W++ R R +  N  
Sbjct: 744 TADSWYEHVHPEDVERTRDSIQRNLSGEMKSHEVEIRCRTRGGDWRWILSRGRVVERNDR 803

Query: 507 GDILRYIGIANDITEQKKSLE-GILCNAFQDN 537
           G+ L   G   DITE+K   +      A  D+
Sbjct: 804 GEPLSMSGTHTDITERKVFEQTQKEAAAVFDS 835



 Score =  123 bits (309), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            I+  +  +Q +      +  + +   R  L    + D  WDWD+   +V  +     + 
Sbjct: 432 AIVSLYGTMQDITERKRMAMQVKASESRLQLVAEATSDGFWDWDLRSGKVYRSSRYYEVT 491

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G       G  R +   +H  D       +++    +  R++ +FR+   D    W+  R
Sbjct: 492 GTQPEDDSGDFRFFRQMVHPADLPYVLQAIEAHRRGKTPRIEIDFRLARQDEGVRWLQAR 551

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
            R +  +  G  +R +G  +DITE+K++ E + 
Sbjct: 552 GRAVEWDERGAAVRLVGNLSDITERKRADEDLR 584



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 97/334 (29%), Gaps = 12/334 (3%)

Query: 203 AIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALS 262
            + L +  ++  + M      +   VL  +++D      L    +      +        
Sbjct: 123 MLILFMLPIILGACMGGIGPGLLATVLSVLAVDLMVEPHLHAAQTPWHSKVQLLFLALNG 182

Query: 263 SSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
            + +  L   L        +       +                   + +  LA +    
Sbjct: 183 LA-VSLLCEMLRQALERVALHRALLDAVVSSTSDAVFVKDVQGRYLLVNQAALAFVGKTS 241

Query: 323 TYFIIYHGMKGYE--RAVLLIPAWILIFIWFIG------LWMAITKRLDNDIIQPALVGG 374
              I       ++   A  LI    LI            L +   +R+   + +  +   
Sbjct: 242 GEVIGKDDRDVFDEETARELIIQDRLIMQSGRVQTHEEHLALQNGERMVFLVTKGPVYNH 301

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
             L+  L G +  + +         +         A   +G   W WD+V DR + +P+ 
Sbjct: 302 EGLLGGLFGIS--RDITRQKQAENQLRDSEAMLQQAQQLAGIGSWSWDLVDDRQSWSPEA 359

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             + GL   S          Y   +        ++       G  + +  +  AD +  W
Sbjct: 360 YRLFGLTEKSGPPGYPAMRRYFDADGWAQLSEAVERCKLVGMG-YECDVELLRADGESRW 418

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           + +R     +  G I+   G   DITE+K+    
Sbjct: 419 LTMRGEARRDEEGAIVSLYGTMQDITERKRMAMQ 452



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 98/329 (29%), Gaps = 20/329 (6%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF-- 268
            +  +      FA+AW+      +     S++V L   + + +   + I L  +L     
Sbjct: 9   FILLAVSSYALFALAWIFFSDQLLAGLDASRVVPLSIAKGVFFVLVTSILLLLALRAVPS 68

Query: 269 -----LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
                   +L       +    T        +                 +    +++ + 
Sbjct: 69  REGGAQLAWLGNLANGMRSERWTNWLAYPAVLALVAGALALRQFLMGPELGAHPMLILFM 128

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
             II     G     LL     ++ +  +        +         L   L  + + + 
Sbjct: 129 LPIILGACMGGIGPGLLATVLSVLAVDLMVEPHLHAAQTPWHSKVQLLFLALNGLAVSLL 188

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +++  L      + +          V  + D V+  D+    +         +G  SG
Sbjct: 189 CEMLRQALERVALHRALLDA------VVSSTSDAVFVKDVQGRYLLVNQAALAFVGKTSG 242

Query: 444 SMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            + G     +      D +  R ++  D  +        +E  +   + +    ++   P
Sbjct: 243 EVIGKDDRDVF-----DEETARELIIQDRLIMQSGRVQTHEEHLALQNGERMVFLVTKGP 297

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
           + N  G +    GI+ DIT QK++   + 
Sbjct: 298 VYNHEGLLGGLFGISRDITRQKQAENQLR 326



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 9/134 (6%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                 E   L +  +GD +W  D+    +   P    + G +   +     +    +  
Sbjct: 575 ERKRADEDLRLVLNEAGDAIWVTDVDGYFIFANPAACRLTGHSLDDLREMHIH--DLVAP 632

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                    L          L+ E+++R   +    + +    M +      RYI    D
Sbjct: 633 ECLGLLAEHLAKI--NNGAFLRSEWKLRLKKSGTVSVDLTSGKMKDG-----RYIAFGRD 685

Query: 519 ITEQKKSLEGILCN 532
           +TEQ ++ + +   
Sbjct: 686 LTEQHRAEQELRDR 699


>gi|186471840|ref|YP_001863158.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184198149|gb|ACC76112.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 694

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 143/691 (20%), Positives = 269/691 (38%), Gaps = 53/691 (7%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
                                 +   S    +    +  +   SI +  + F ++   + 
Sbjct: 41  RLWLTGGAFAMGLGIWSMHFIGMLAFSLPIRLGYDPLVTLLSLSIAVASSAFALWLVCQQ 100

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
              A  L+     + +      M  T       ++P +V  + L  + I   V    +A 
Sbjct: 101 TLPAGRLVGG--AVLMGLGVAGMHYTGMAALR-MEPGIVYDVPLFALSIVIAVAASGVAL 157

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-----HGP 448
                 +  +  R      G+  ++    +       +       G  +GS+      G 
Sbjct: 158 KTAF-SLRHNSRRMRPLRAGAAIVMGLAIVGMHYTGMSAA-----GFPAGSLCTAATEGV 211

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              WL  +           L          L  + R+                    N  
Sbjct: 212 NGTWLALL------IIVVTLAVTAVALTISLLEDLRLET-----------------ENAA 248

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           + R +          ++ + +   A  D LT +PNR     RL   L  + +D      +
Sbjct: 249 LTRSLA---------EANQELGYLALHDALTKLPNRVLLEGRLEEALARARSDGG-EFAL 298

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D +K +ND  G  VGD +LV +  R+   ++  D LAR+ G+ F +++  E    
Sbjct: 299 MFMDLDGFKVVNDAYGHQVGDRLLVQVAERLASAVRGNDTLARVGGDEFVLLVPDEG-RA 357

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  +  +I  P ++   ++ ++ SIG A   +      + L +A+ AMYHAK  G
Sbjct: 358 GATIIAGRLLAAIGAPFDVDGHDLRISTSIGIAMCPADGALVHDALMHADAAMYHAKSMG 417

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F   ++     ++ + +DL  A+E +EL L Y P     D  I G+EAL++W H
Sbjct: 418 RNAHCFFDASMNENMQCQLQLTQDLRAALERNELVLHYQPQFAAPDGPITGVEALVRWAH 477

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK G I   EF+ +AE+  +I  I  ++L+   R +  W D        + +N++     
Sbjct: 478 PKRGMIGPDEFIPLAEKTGLIVPIGEWVLDEACRQVREWLD-TGACDWNVAVNLSPVQFS 536

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L   ++  +++    P  + +  +ES  M + E S  +L  L ++G+ +++DDFGT 
Sbjct: 537 HPQLTALVRDTLARHRVDPRHLTIEVTESAAMRDVEASLRILQALHEMGVRISIDDFGTG 596

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L YL  +P   +K +   +          AI+ S++ +   +   I+A+ +      
Sbjct: 597 YSSLMYLKRLPASELKIDRGFVRELAHDAEDAAIVSSVVALGHTLGIDIVAEGVETATQK 656

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + LTR+GC+ +Q   +  P+    +  L +E
Sbjct: 657 EFLTRLGCNSLQGYLLGRPVPAADLGALSRE 687


>gi|237748732|ref|ZP_04579212.1| signal transduction protein [Oxalobacter formigenes OXCC13]
 gi|229380094|gb|EEO30185.1| signal transduction protein [Oxalobacter formigenes OXCC13]
          Length = 587

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/557 (22%), Positives = 257/557 (46%), Gaps = 11/557 (1%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R    +      V         +        +LG   G      +     I+ N   + +
Sbjct: 29  RHKTILDNLPVGVLQISEDEQILFANSRFEEMLGYDPGKF---PKTVKDLINPNTYFHTQ 85

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                    +R + Q E + R  +  +      ++ + + +      + ++  +T+ +  
Sbjct: 86  HTWKDMWHTQR-QFQVEIKFRNKNGLYMQTENIVKLILDEDNKPDFALIVSR-LTDPEGK 143

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  +  D LT +P R      L   ++ +     +   ++  +I+++K IN+ LG 
Sbjct: 144 PFPDQHISLFDPLTSLPTRNYLDSFLDGAIERTRQSGKMLGILIF-NINRFKIINESLGH 202

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L   ++R+   +   D + RL G+ F +IL   + +  I   A  + K ++ P 
Sbjct: 203 DAGDALLKLFSKRLIHGIDERDTVVRLGGDEFVVILEKIDKASDIVAIATRLLKMVSEPS 262

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L   +I++  SIG + +      ++ +LK A +A+  A+ R  +    +      +   
Sbjct: 263 QLSGHDISIAVSIGGSIYPRDSTDANTLLKYAGVALTEARKRRSSVARFYNPDMIITPMQ 322

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + +L  A++ +E  L Y P + L   +IVGLEALI+W HP  G IS++ F+  AEE
Sbjct: 323 RLMHESELRRALDKNEFILYYQPRLSLATGKIVGLEALIRWKHPSEGIISAANFIPTAEE 382

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I+ I  F L  + R ++ W+ +  +P + + +N++SKDL   +L + +  ++++   
Sbjct: 383 IGLIEKITEFTLTAVTRQLLDWQSRK-VPVVPVALNVSSKDLYTPDLTQSILHIVTEMGL 441

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P+  +L  +ES ++ + ++ +  L  +R +G+++++DDFGT  S L YL  +P D +K 
Sbjct: 442 PPTLYELEITESSLIEDMDKVKTNLMEIRDLGVTISIDDFGTGYSSLRYLSSLPIDLLKI 501

Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +GS ++G TE     +I+ S I +A ++   +IA+ +     +  L   GCD IQ    +
Sbjct: 502 DGSFISGLTESDGIQSIIESTIDLAHSLGMPVIAEGVATHEQLAFLCTKGCDQIQGYLCS 561

Query: 942 SPLGFNSILKLLKERFP 958
            PL    +   L +  P
Sbjct: 562 PPLPPEKVEIFLAKHQP 578


>gi|313200980|ref|YP_004039638.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440296|gb|ADQ84402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 748

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 153/772 (19%), Positives = 289/772 (37%), Gaps = 49/772 (6%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV----NLPSGELLIW 253
                 +   + Y+     ++     +AW+    I          V     + +     W
Sbjct: 10  FVFAAIVASLLVYVQLD--VVPLAVCLAWMTFFLIVYGLRKALVWVYKRTPVHAYPPGFW 67

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
                       I +    +     H        +          +  Y      + A  
Sbjct: 68  LNWFRALSGLCGIAWGLSGIFLFYPHDTAHQAFLTLALAGVCGGAVMAYATDKPTAYAF- 126

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
                       +      G   ++L+    +L  ++       +  RL  +I+      
Sbjct: 127 ----AGGLILLGLPRFFWGGNHFSMLMAVNLLLFILYVTIASFKLANRLRENIV------ 176

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
                       ++ H        + I +  +RQ L +  +   V +WD+     +    
Sbjct: 177 ----------LRIMAH-----ESQEAINAMAQRQKLHIDHTPLAVIEWDVNFRVTSWNAA 221

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              I G       G   ++   I   D       + S + +  G   ++      D +  
Sbjct: 222 AEHIFGYPPSEALGRHMSF---IVPPDGQMMAQDIMSKLAHEAGGQHWQHDNVRRDGRVI 278

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
                   + N    I+ +  +  D T  KK+ + I   A+ D LT +PNR+  ++RL+ 
Sbjct: 279 HCEWFNTAIKNDQNRIIGFASLIQDETAYKKAQDEIERLAYFDALTNLPNRRLLMERLSQ 338

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L+ S +   +   +M ID+D +K +ND  G A GD +L  +  R+   ++  D +AR+ 
Sbjct: 339 ALNNSRSSHRI-GGLMFIDLDNFKTLNDSRGHAFGDLLLKEVAARLLRAVRNHDTVARIG 397

Query: 614 GNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           G+ F ++L         A       A  +   I++P +L   +   +ASIG   +    +
Sbjct: 398 GDEFVLLLEDIGRDEGAAIQTASQIAEKILADISLPFDLGNYKHQCSASIGICMFYRQGM 457

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
              E+LK A+ AMY  K  G N+   F  S          +K DL  A+   +  L Y P
Sbjct: 458 HVEEVLKRADAAMYETKRAGRNNYRFFDESMLPVIDSRASLKNDLRFALSLGQFELYYQP 517

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +        G E L++W HP+ G +   EF+ +AEE  MI  I  ++L++    +  W 
Sbjct: 518 QVDGE-LRTTGAEVLLRWHHPERGMVPPGEFIPLAEESGMIIPIGNWVLQQACMQLGKWS 576

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
             A    + + +N+++      +  E ++  + ++  +   + L  +ES+V+ N +    
Sbjct: 577 HHAKTSQLRLSVNVSAMQFGQADFVEQVRHALLESGCNEKLLVLELTESLVIQNIDDIVS 636

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-----KRIAILRS 901
            +  L+ IG+SL++DDFG   S LS L  +P D++K + S +    +         I+++
Sbjct: 637 KMQALKSIGVSLSMDDFGLGYSSLSLLLRLPLDSLKIDQSFVREIQDNAPKNDSAVIVQT 696

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+ M KN+   +IA+ I        L ++GC   Q      P   +     L
Sbjct: 697 IVAMGKNLGLDVIAEGIEEPYQQAFLEQVGCHAYQGYLYGRPSELSVFEHTL 748


>gi|297537576|ref|YP_003673345.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297256923|gb|ADI28768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 828

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/596 (23%), Positives = 278/596 (46%), Gaps = 11/596 (1%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVR 425
                   +V+   +IG       +    + Q   +  ++  + +       +  +D+  
Sbjct: 237 WAETFKSCVVVNDEVIGTVGFARDITKEQYLQAQVAKRQQDYMTLVKNLPITIVRYDLDC 296

Query: 426 DRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            RV  +       G++        P   W PYI       F   L   +  ++ +  +E 
Sbjct: 297 KRVFVSAHCDEQYGVSDKVYLFKTPEEEWSPYILNLSAKEFTQRLQKVMQTQKKQ-SFEI 355

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             +     F    +++ P  + + ++   + IA DITE  +  + I   AF D LT +PN
Sbjct: 356 HAKHG-GAFSVNQVKLIPEYDEHHNVTGALTIATDITENAEYRQTIEHLAFHDVLTDLPN 414

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+ F   L   ++ +         V+++D+D +K IND +G AVGD +L+ +  RI + +
Sbjct: 415 RRFFNQALNKAIERAEQHQ-AAFAVLIMDLDHFKTINDTMGHAVGDKLLIGVADRIKQNV 473

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                 AR+ G+ F I++    ++  +   + ++ + +  P  +      V+ASIG A +
Sbjct: 474 DDSYFFARMGGDEFAILIHGYESTEALIAKSASLLEQVVQPYYIAGAGYFVSASIGVACY 533

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELY 721
                   +++K A+ AMY AK +G N+ + +    ++    ++ I+  L  A+ N ELY
Sbjct: 534 PKDSRDVDDLIKYADSAMYSAKQKGRNNCQFYSPTLTADMRYQLEIETALRYALSNDELY 593

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L + PII +  + ++G+EAL +W     G +S + F+ +AEE  +I  I  +++++    
Sbjct: 594 LEFQPIIEMQTKRVIGVEALCRWVSAALGEVSPASFIQVAEESGLIVEIGQWIIKQGFIA 653

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
                + +    I I IN++S+  ++    + ++AL+ +T   PS IK   +E +++ + 
Sbjct: 654 AKIINEASTEL-ISISINLSSRQFVELNFLQRIKALLDETKCEPSWIKFEITEGLLLQDA 712

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAIL 899
                +L    +IGI +++DDFGT  S L+YL   P   VK + S +   T  R    ++
Sbjct: 713 YEVHRVLDAFDEIGIRISIDDFGTGYSALAYLNKFPIHQVKVDRSFINEITTNRSHALLV 772

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++I+ M +++   ++A+ +  E     L   GC Y Q    +  +G ++++ +LK+
Sbjct: 773 KAIVAMVQSLGKELVAEGVETEAQASLLQSYGCQYAQGFLFSKSVGLDNLMLMLKK 828


>gi|229159634|ref|ZP_04287646.1| Sensory box/GGDEF [Bacillus cereus R309803]
 gi|228623838|gb|EEK80652.1| Sensory box/GGDEF [Bacillus cereus R309803]
          Length = 689

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 250/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     +         +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGKITYANPATYEIFGYRYEELSNKFI--FKFINKEYEKDFQM 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKEALQGRATQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A+ D LTG+ NR S  ++L   L     ++N+   ++ ID+D++  IND  G  
Sbjct: 265 KRTEYLAYYDQLTGLMNRISCTNKLNVFL-----NENINFALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A  + K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLQIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKNILKNISNYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCNGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S S+F+ +AE  
Sbjct: 439 FIIENQLYRAIEKNEFFLYYQPQVNIETKKIASMEALIRWENKELGFVSPSQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + I  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCKQIREWLNKDYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 PHLLGIEVTEGALI-HKDLSKRVLLQLKEQNVKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +   +IA+ +     ++ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLGLNVIAEGVEKVEQVQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL  + +  
Sbjct: 677 PLSKHDVEN 685


>gi|332531933|ref|ZP_08407817.1| hypothetical protein PH505_ab00560 [Pseudoalteromonas haloplanktis
            ANT/505]
 gi|332038560|gb|EGI75003.1| hypothetical protein PH505_ab00560 [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1034

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 152/576 (26%), Positives = 262/576 (45%), Gaps = 12/576 (2%)

Query: 388  QHVLATGYFSQGIFSDGERQ--SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            ++V+     +Q   ++      SL    S + +   D         P        +   +
Sbjct: 458  EYVVVLRDITQRKINEEALHLASLVYNNSSEGMAITDPAGIIFDVNPAFCKTTLYSKEEV 517

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             G   + L     +D++ +  +       + GR Q E   R  + Q +   + I  + ++
Sbjct: 518  IGRSSSILSS-GKHDKNFYNKMWSEL--QQTGRWQGEVINRKKNGQLYSEWLTIDTVYDT 574

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            N   +R I I  D+TE+K++ E I   A  D+LT +PNR    +RL      S    + +
Sbjct: 575  NNAPIRRIAIFTDLTEKKQADETIWRQAHYDHLTDLPNRLELKERLNQRFS-SIVTPDNQ 633

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              VM++DID +K IND LG   GD++L  +++RI +  K  + +AR+ G+ F I+     
Sbjct: 634  LVVMLLDIDHFKDINDTLGHHYGDNLLKLVSQRIVQSAKNAEFVARIGGDEFVIVFNRIK 693

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            ++  I   A  +  S++  ++L   E+ ++AS+G A   +    + ++LK A+ AMY AK
Sbjct: 694  STRHINQIASNILLSLSSALHLENEELFISASMGIACAPNDGENTEQLLKAADQAMYKAK 753

Query: 686  HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G N  E F             + +DL  A+E  +  L Y PI+ L D  I   EALI+
Sbjct: 754  SNGRNCFEFFSADMREYAHARMVLLKDLRSAIELEQFELFYQPIVALNDLHIHKAEALIR 813

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP+ G IS   F+ +AEE   I AI  F+  +  + +   +   +     I +N++  
Sbjct: 814  WQHPEKGLISPVAFIPLAEETRQINAIGQFVFAQTLQTLNDIKTLTDDT-FQISVNVSPV 872

Query: 804  DLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   E   +    ++       S I    +E +++     ++  L  + K G+ L LDD
Sbjct: 873  QLSTPESGIDEWYDMLKAAKLPASSIVAEITEGLMINPEALTQRRLKEIVKSGMQLALDD 932

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S L+YL  +  D +K +   +          A+  +II MA  +   +IA+ I  
Sbjct: 933  FGTGYSSLAYLQEMDTDYLKIDKRFVDNIQVGSQELALCEAIIVMAHQLGLKVIAEGIET 992

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E+ ++ L   GCDY Q    + PL  +S + LL ++
Sbjct: 993  ELQMQLLLEAGCDYGQGYLFSRPLNKSSFMALLADK 1028


>gi|228961612|ref|ZP_04123221.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798094|gb|EEM45098.1| Sensory box protein [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 735

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 145/562 (25%), Positives = 272/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      R   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 236 KDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    VM +D+D++KK
Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 351

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  + 
Sbjct: 352 INDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKGNGKNRFVFFSKE 471

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++
Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQ 531

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHTDLIPTISK 590

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 591 VLKETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L +  CD+
Sbjct: 651 PINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGVETEEEWEFLHKQNCDH 710

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732


>gi|254489795|ref|ZP_05102990.1| hypothetical protein MDMS009_126 [Methylophaga thiooxidans DMS010]
 gi|224464880|gb|EEF81134.1| hypothetical protein MDMS009_126 [Methylophaga thiooxydans DMS010]
          Length = 763

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 134/579 (23%), Positives = 261/579 (45%), Gaps = 10/579 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +       Q +F   E  ++ +    + V   D         P    I G  + 
Sbjct: 180 LMTMVDISHEKQVEQNLFQQNEYLNIILSSVDEGVIATDTRGLVTFINPKAELITGWKTS 239

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            + G  I   +       + N    +   +  +R  R+    ++ + D +   +     P
Sbjct: 240 EVLGHSIEEVVQLRDPETKVNTENPIRVCLRQHRITRMPLNTQLVSKDGRLSQIEQTAAP 299

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + + +G +   + + +DI++           +  D LT +PNR    ++L    D +   
Sbjct: 300 LRDVDGKLSGAVAVIHDISQSISLSLLRSQASSYDQLTNVPNRIFIREKLQLACD-AVKA 358

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            ++R  + VID+D +K  ND  G   GD VL SL RR+ E  +  + + RL  + F +I 
Sbjct: 359 SDMRMAMAVIDVDYFKSFNDAHGNGTGDAVLKSLARRLFENYEPGNSIGRLGADEFMVIF 418

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +++  I     A+   +  P  + +   +++ SIG +   +      ++++ A+ A+
Sbjct: 419 RDIDDNDGIDTTLHALLDLLRTPFRVEDTSYSLSVSIGVSVIDAYCNEPDQVMQQADAAL 478

Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGL 738
           Y AK  GG+    F      S   R   +E L  ++ N+E L + Y P + L   +++G+
Sbjct: 479 YRAKFEGGDVYRVFTKELEVSLLQRRSTEELLRRSLINTEKLEVFYQPKVDLATSQVIGV 538

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +        +S  EF+ IAEE  +I  +   +LER  +D   W  + +   I + +
Sbjct: 539 EALARLRDDSGKIVSPIEFIPIAEETGLIIQLGNLVLERACQDCYEWNQKGH--KIPVSV 596

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI++   L N+L   ++  +  +   P+ ++L  +E+  + + E +     +L++IGIS+
Sbjct: 597 NISAVQCLHNDLVNTIETSMQTSGLEPALLELEVTETAFIRDFEDTLEKFHQLKQIGISI 656

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFG   S L+YL  +  D +K + S + G     +   I+++II + +++   IIA+
Sbjct: 657 SIDDFGKGYSNLTYLRRLEVDKLKLDMSYVRGMLENPRDYEIVKTIINLGQSMNLDIIAE 716

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I  E     L ++GC Y Q  + A PL  +++L  L +
Sbjct: 717 GIETEFHRDALLKLGCQYGQGYYYAKPLPHDALLDYLNK 755


>gi|288959829|ref|YP_003450169.1| signal transduction protein [Azospirillum sp. B510]
 gi|288912137|dbj|BAI73625.1| signal transduction protein [Azospirillum sp. B510]
          Length = 624

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 150/575 (26%), Positives = 264/575 (45%), Gaps = 33/575 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG----LASGSMHGPIRNWLPYIHINDRD 462
             L +    + V         VT  P    + G    +A  +  G        +      
Sbjct: 40  LRLVLDNMAEGVCVAGCDGRIVTANPAAEAVFGPLGGVAFDARFGSRLRLADGVSP--CP 97

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQF------------HWMIIRIRPMSNSNGDIL 510
                +   +       +  +   A                  W+ +  RP+   +G  +
Sbjct: 98  EALWPMGRAIRGETMDRESLYLAPAMSGGPQTDGVGAGIGAGVWLRVNARPLV-QDGRSV 156

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  DIT+ K   + I   A  D LTG+ NR  F  RL   +  +  D + R  VM+
Sbjct: 157 GGVLVFRDITQVKAVEDRIAWLAHFDPLTGLSNRVEFRRRLEMAIASARQDGS-RLAVML 215

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D D +K+IND  G AVGD++LV++  R+ + L    ++ARL G+ F I++  + +   +
Sbjct: 216 LDFDGFKEINDQFGHAVGDELLVAVAGRLRDALGSGAVIARLGGDEFTILVEEDGD-GTL 274

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            D +  + +++A P  L      +TASIG   + +   T  ++L+ A++AMY AK RGG+
Sbjct: 275 TDASHTLIRALAEPFPLTSGRHRLTASIGAVRYPAEADTIDDLLRMADMAMYRAKERGGS 334

Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            V  +  +   +  +R  ++  L  A+E  E +LVY P++       VG+EAL++W  P 
Sbjct: 335 AVCRYDPAMMAAAAERTRLRGLLAGALERGEFHLVYQPLVEAAGGRPVGVEALLRWR-PS 393

Query: 749 WG--NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                +  S F+ + E   +I  I  ++LE   R I +W D    P + I +N++ + L 
Sbjct: 394 GAAAPVPPSAFIPLCEASGLILDIGRWVLETACRQIRTWAD-GGGPSLEIAVNVSPRQLR 452

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L E ++ +++ T   P+ + L  +E +++ + E SR +L  L+++G+ L LDDFGT 
Sbjct: 453 DPTLLEDVRRVLAATGIDPALLVLEVTEGLLIEDMEYSRHVLTGLKRLGVRLALDDFGTG 512

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            S LSYL  +PFD +K +GS                A+ R+II +A+++  T++A+ +  
Sbjct: 513 YSSLSYLNSLPFDVLKMDGSFTRNLAAAELDNAGGQAVARAIIGLARSLSMTLVAEGVET 572

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 L   GC  IQ   +  P    +  +L+  
Sbjct: 573 PAQHAWLAANGCSLIQGYLIGRPEPAPAAAELIDR 607


>gi|300863750|ref|ZP_07108681.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300338257|emb|CBN53827.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1074

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 263/593 (44%), Gaps = 17/593 (2%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++ I        +      Q      ER  L +          D         P    I 
Sbjct: 478  LLEITAERCAMAILNAQLYQQTKELQERLQLQIERMPIGYIFTDPESRIQEWNPAAEQIF 537

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            G +   + G   +    +    R     I      +     Q          +      +
Sbjct: 538  GFSKEEVLGRHYDI--IVPPEVRSEIGDIFQQLF-HSEHTKQNVNENLTKTGEIITCDWQ 594

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
               +   +G ++  + +  +IT Q+++ + +   AF D +T +PN+  F+  L      S
Sbjct: 595  NTTIKKEDGAVIGVLSMVQNITLQQRAEKQLWKYAFYDQITDLPNQTFFIAWLKQFAVRS 654

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---------IL 609
              ++     V+ +D+ +++ +   +G  V +++L+++  R+       D          +
Sbjct: 655  LCEETTLFAVLYLDLSRFQLVKYSMGQKVANELLMAVAERLQTCRPKNDEFEQLPKINSI 714

Query: 610  ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            A +  + F I+L +          A  +++ ++ P  L   E+   +SIG    + +   
Sbjct: 715  AHVGPDEFAILLENIQEESDAIAIAEHIQQQLSAPFKLDGCELFTDSSIGIVLSSINYQQ 774

Query: 670  SSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPI 727
              ++L+ AE AM  AK  G +    F  S        + +  DL  A+EN E  + Y PI
Sbjct: 775  PEQLLQAAETAMNQAKGLGKSRYAVFNTSMQERAVRPLHLDADLRRALENREFQVYYQPI 834

Query: 728  IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            + L++ +I+G EAL++W HP+ G +S +EF+ +AEE  +I  +  ++L      I++W+ 
Sbjct: 835  LSLVNHQIIGFEALVRWLHPERGLVSPAEFIPLAEESSLIIPLGAWVLCEATSQIMAWQQ 894

Query: 788  QAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            +    PP+ I +N+++  L+ +   E +  L+ +T  +P  +KL  +E+ VM N +    
Sbjct: 895  KFPTNPPLSISVNVSAVQLVQSCFIERIDRLLKETGINPLSLKLEITETAVMENAKSVTN 954

Query: 847  LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIP 904
            +L  L+  GI L++DDFGT  S LSYL   PFDT+K + + ++      K + I+R+II 
Sbjct: 955  ILEYLKDRGIHLSIDDFGTGYSSLSYLHTFPFDTLKIDRAFVSRMSIDPKNLEIIRTIII 1014

Query: 905  MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +A N+   ++A+ I     + +L ++ C++ Q    + P+   +  +LL+ + 
Sbjct: 1015 LAHNLGMDLVAEGIETREQLNQLQQLQCEHGQGYLFSRPVDREAAERLLEMQL 1067



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 4/149 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      ++ +    E+    V  +   ++  D         P    ILG    
Sbjct: 183 IGISRDITEIKQATEVLQKTKEKLQAVVSAAPLAIFVTDRQNYVKMWNPAAEKILGWRET 242

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       LP I    ++    + D         +  E +    +     + + + P+ 
Sbjct: 243 EVLNSP---LPIIPPQKQEECEVVRDRVFQGDS-LVNLEAKAVKRNGSEIDISLSLAPLY 298

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
           + +G I   + +  DI+++K++ E     
Sbjct: 299 DIDGQINSILSVIADISDRKRAEEERDRL 327



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 14/200 (7%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
              +           WIL+    +G     +    N  IQ       VL+   + + +I+
Sbjct: 11  LAYRTVFIYAFFSSLWILLSDTVLGSLTQTSGFFTN--IQTLKGWVFVLVTSGLIYALIR 68

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                      +          + G+ D ++  DI    +      A +LG     + G 
Sbjct: 69  RNF------HSLQESYNLLEAIIEGTTDAIFVKDIEGRYLMVNSTTAQLLGRPKSEILGK 122

Query: 449 -IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             RN+           ++    +       +   EF +   +N     I       + +G
Sbjct: 123 DDRNFFSL---ETASQYQENDRAIFASGETQTIEEFGII--NNIKRVYIATKYLCRDKSG 177

Query: 508 DILRYIGIANDITEQKKSLE 527
             +  IGI+ DITE K++ E
Sbjct: 178 KTIGLIGISRDITEIKQATE 197


>gi|53802317|ref|YP_112991.1| CBS/GGDEF/EAL domain-containing protein [Methylococcus capsulatus
           str. Bath]
 gi|53756078|gb|AAU90369.1| CBS/GGDEF/EAL domain protein [Methylococcus capsulatus str. Bath]
          Length = 594

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 134/526 (25%), Positives = 241/526 (45%), Gaps = 13/526 (2%)

Query: 440 LASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           +    +         ++H   RD + +  + +F+      ++ +  +           +R
Sbjct: 68  MRPVGLIDRYSLVEQFLHPYSRDLYHKHSIAAFMDPEPVIVEADSSIDDLSRIIIDAGMR 127

Query: 499 IRP---MSNSNGDILRYIGIANDITEQKKSLEGIL--CNAFQDNLTGIPNRQSFLDRLTT 553
                 +   +G  L  IG  +D+ E+  + +       A  D LT +PNR    DRL  
Sbjct: 128 HMVSGFIVTEDGLYLG-IGSGHDLFEEVANRKQNHLYHLAHYDPLTSLPNRLLLNDRLKR 186

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
                      R  ++ ID+D++K +ND LG A GD +L  +  R    ++  D +ARL 
Sbjct: 187 ACLRGQR-GGYRIALLFIDLDRFKLVNDTLGHAAGDQLLQGVAGRFAACVRKVDTVARLG 245

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L       +    A  + +S+  P  +   EIT +ASIG   +     T   +
Sbjct: 246 GDEFTVLLEPVQGPDEALAVAAKLAQSLERPFLIQNHEITTSASIGVVLFPEHDATVEGL 305

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           ++ A+ AMY AK  G N    F      +  +RV ++  L  A+E  E    + P +   
Sbjct: 306 MRKADAAMYCAKREGRNRFALFTEEMNSTVVERVTLESYLNAALEKGEFCCHFQPQMATA 365

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D+ IVG+EAL++W +P  G +   +F+ +AE+  +I  + L+ LE      + W  Q   
Sbjct: 366 DDRIVGVEALLRWTNPVLGRVPPLKFIPVAEDTGLILPLGLWALETACAQQVRWLSQGL- 424

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           PP+ + +NI+     + E C+ ++A++ +T      ++L  +ES VM + E S  +L  L
Sbjct: 425 PPLRMAVNISPLQFRNREFCDQVRAIVQRTGIRAEHLELELTESAVMADAESSVGILREL 484

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909
           R  GI L +DDFGT  S LSYL   P D +K + S ++G         I+++I+ +  ++
Sbjct: 485 RDSGIRLAIDDFGTGYSSLSYLRKFPLDRLKIDRSFVSGIDRIPANELIVKAIVALGGSL 544

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +    +++ + R GC   Q   ++ PL         ++
Sbjct: 545 GLDVIAEGVETPEELECIERCGCSEYQGFRLSEPLTAEDFAHWFED 590


>gi|118581086|ref|YP_902336.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118503796|gb|ABL00279.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 1023

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 152/650 (23%), Positives = 284/650 (43%), Gaps = 27/650 (4%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGF 384
           +   +    +       +L +     LW+ I++ +   +   I      GL+   + I  
Sbjct: 6   FRAFRLPPLSRPSPLTIVLFYALTGMLWIGISEMITEALAGEIHTFPRPGLLKGTLFILL 65

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI----VRDRVTTTPDIATILGL 440
           T I   L   +F + + + G     A   S D +   +I        +          G 
Sbjct: 66  TSILLHLLIRFFVRELRTTGNILQAAFQASPDAI---NIKRLKDGVFLKINSGFTRTFGY 122

Query: 441 ASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +     G   + L       DR      LDS +   R    +    R  + +     +  
Sbjct: 123 SEAETIGRTASALELWESSADRLR----LDSCLEQSRDVRDFHALFRTREGKLFRGSLTA 178

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           R ++    + L  + I  D T + ++ E     A  D  TG+PN   F+DRL   +   A
Sbjct: 179 RRVNLEGDECL--VTIVRDRTAELEAREEAEKLANYDPETGLPNHSLFMDRLERTIGQDA 236

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            D N    ++ I +  YK I DV G      ++  L+R+I   ++  D +AR+  + F +
Sbjct: 237 RDRNKTV-IIYISLTGYKAIVDVFGHDGESRIIKPLSRQIVAAVRQHDSVARIRHDEFAV 295

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L    N   +      +++  A+P+   + E  + A +G A + +  +T++ +++NA +
Sbjct: 296 MLGGVTNDGDVTTILNRLQQIFAVPLPTSQGECAIPACMGVACFPTDGLTANIIMQNAHI 355

Query: 680 AMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           AM  A+  G      S  ++    +R  I+  +  A++  E +L Y P + + D ++ G+
Sbjct: 356 AMNQARQAGIPLQFYSESMNRKAMERFAIETCMLRAIDAGEFFLCYQPKVEIHDMKLTGV 415

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W  P  G I    F+ +AEE  MI  +  ++L    R   +W+D    P   + +
Sbjct: 416 EALVRWQRPGEGVIPPDRFIALAEENGMIVRLGGWILGEACRQNRAWQDAGL-PRTVVSV 474

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+++ L +N   E ++ ++ +T   P  + L  +ESVVM N +     L RL+++G+ +
Sbjct: 475 NISARQLRENSFVEQVERILEETGLEPCYLDLELTESVVMANSDEIVQKLTRLKQLGVGI 534

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LSYL ++P DT+K + S +          AI+ ++I M   +  T+IA+
Sbjct: 535 SVDDFGTGYSSLSYLKHLPVDTIKVDRSFVRDIVHDPDDKAIVEAVIAMGHALGLTVIAE 594

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER-----FPLVK 961
            +     ++ L    C+  Q  + + PL    + + L +      FP  K
Sbjct: 595 GVETLEQLEFLRSQNCNQAQGYYFSKPLDSGHLARFLSKHCQEMSFPPAK 644



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 537 NLTGIP-NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            LTG+P N     + +   ++      +    +  ID+D +K  ND  G   GD V+  L
Sbjct: 821 PLTGMPGN-----ESIQREINNRLASGH-PFDIAYIDVDNFKPYNDYYGFQRGDTVIKVL 874

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
              I            + G+ F +I     +    +   
Sbjct: 875 GEIITTATDTTGFCGHIGGDDFIVITEPHQSPGVASRII 913


>gi|254483132|ref|ZP_05096366.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036654|gb|EEB77327.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 570

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/458 (27%), Positives = 227/458 (49%), Gaps = 24/458 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+  + +   A+ D LT +PNR+SF ++L  IL            ++ ID+D +K+IND
Sbjct: 108 LKRQEDRLRYLAYYDPLTSLPNRRSFNEQLNRILKRCRRH-KTNAALLFIDLDHFKRIND 166

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDIL-------------------ARLSGNRFGIILI 622
            +G   GD +LV + +R+   L+  D +                   ARL G+ F ++L 
Sbjct: 167 SIGHGRGDRLLVEIAKRLTVELREDDAINYYSDNSAEDDSNNSNTEIARLGGDEFTVVLS 226

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N+ ++   A  +  +++ PI L      VT S+G A +         +++NA+ AMY
Sbjct: 227 DIPNAGQVERVAQRILAALSEPIALQSHNPVVTPSVGIALFPQDGEDPDTLVRNADTAMY 286

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G      +         +++ ++E+L  A++N+EL L Y P +     ++V +EA
Sbjct: 287 AAKAQGRACFRFYDEEMNAKAVEQLKMEEELRDAMQNNELELRYQPQVDTATGDVVSMEA 346

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W H   G +S  +F+ +AE    I  +  ++++ +AR    W D   +PP  + +NI
Sbjct: 347 LVRWKHSTRGMVSPLDFIPVAERTGQIIELGEWVMKEVARHCNYW-DSMGLPPFRVCVNI 405

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +      ++L   +   + ++    SR++L  +ES +M + + +   L +L+ +G+ L +
Sbjct: 406 SPLQFNQSDLPRSIGEFLRESGMQASRLELELTESAIMTDAQTNIEKLQQLKALGLELAV 465

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DDFGT  S LSYL   P DT+K + S +    T    AI+ +II ++K +   +IA+ I 
Sbjct: 466 DDFGTGYSSLSYLKRFPIDTLKIDQSFVADLGTTDGAAIVDAIIALSKTLNLRVIAEGIE 525

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +  +  L   G D +Q    A P+    +  +L++ F
Sbjct: 526 EKEQLDYLVARGADLLQGYFFARPIYPEDVPDMLRQNF 563


>gi|332535508|ref|ZP_08411286.1| putative sensory box protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035085|gb|EGI71601.1| putative sensory box protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1500

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/551 (22%), Positives = 237/551 (43%), Gaps = 15/551 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LPYIHINDRDNFRTIL 468
            A   + D V+  D   +   +   + T    ++ S+     N  +   +  D       L
Sbjct: 953  AFEQTRDWVFILDKNLNIRASNKSLQTAFNFSAESLSSRTLNLGISRSNRFDYLRIMQKL 1012

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                         E  V  A+ +   ++++I  ++++   +  Y+ I  DI  QK +   
Sbjct: 1013 SV-----GEHFSCEDSVVLANGESRHVLVKISAVADNEQRLNSYVIILTDINAQKSAENE 1067

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +   A  D LTG+PNR  F DR+   L+ +      +  ++ I+I ++K  ND LG    
Sbjct: 1068 LHLLANYDALTGLPNRTLFNDRVEHALEQAKLH-GCKVALLHINIKRFKYFNDSLGHEAA 1126

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            D+++  +  R+   L+  D +AR  G+ F +++   +   ++      +   +   I + 
Sbjct: 1127 DELIKEVAERLKCSLRPSDSVARFGGDEFVVLVEDIHQIEQVLIICTKLMDCVNQNIAIN 1186

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVM 706
             + + V  SIG +           +LK A +A+YHAK    G        ++      + 
Sbjct: 1187 GQVVNVNLSIGVSISPDDAEQGPALLKAASIALYHAKDSLEGRYQFYKQEMNQHVQRALH 1246

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            ++  L  A    E    Y PII    ++  G E L++W  P+   + + EF L AE + +
Sbjct: 1247 LESQLTRAYREEEFCNYYQPIINAKSQKTEGFEVLLRW--PENKLVQTQEFSLAAEGIGL 1304

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I  I L    R   ++  WR     P +++ IN+++ D    EL   ++  ++ +  S  
Sbjct: 1305 ITKIMLQTFARALLELKEWRKA--SPNLYLSINLSALDFEFKELVPEIKKALNNSGVSSE 1362

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             I    +ES++M + + +   + +L+K+G  L +DDFGT  + L+YL   P D +K + S
Sbjct: 1363 AIVFEITESILMRDSKEALHSMEQLKKLGCRLYMDDFGTGYASLTYLKRFPIDVLKIDRS 1422

Query: 887  LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +          AI++S + +A ++    +A+ +     +  L   GC + Q    + P+
Sbjct: 1423 FVQDIGIDSDDEAIIQSTLALADSLGKECVAEGVESSHQLAFLKARGCKHFQGYLFSKPV 1482

Query: 945  GFNSILKLLKE 955
                +L L+  
Sbjct: 1483 PNTEVLALINR 1493



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 10/165 (6%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIF-------SDGERQSLAVLGSGDIVWDWDIVR 425
             +VL  +L    V   V+      + +            R  LA+ GS   VWDW+   
Sbjct: 787 YFMVLYAMLFIGFVAMWVMRRNKIQRILLAANKESKESEARLKLALEGSESGVWDWESSN 846

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +   P +A+ LG  + ++   +  +L  IH  D+  FR     F+   +G     +R+
Sbjct: 847 PSIYQ-PRLASELGYENETV--SLDEYLSKIHPQDKQLFRLEWLEFLSTDKGYFNCTYRL 903

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           R A   + W     + +   +    +  G   ++T +    E  L
Sbjct: 904 RHAKGYWRWYKDFGKVVEWDDKTPQKVAGTYTNMTREMVFEEHAL 948


>gi|77361433|ref|YP_341008.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76876344|emb|CAI87566.1| conserved protein of unknown function ; putative sensory box
           protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1007

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/561 (24%), Positives = 248/561 (44%), Gaps = 14/561 (2%)

Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + E   LA      S + +   D         P  +     +   +     + L     
Sbjct: 445 QNEEALHLAALVYGNSSEGMAITDENGIIFDVNPAFSKTTLFSKEEVINKTISVLSS-GK 503

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D+  ++ +         GR Q E   R  + + +   + I  + + N   +R I I  D
Sbjct: 504 HDKTFYQALWAEL--TSTGRWQGEIINRRKNGELYVEWLTIDTVYDDNNIPVRRIAIFTD 561

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE+K++   I   A  D+LT +PNR     RL         ++  +  +M++DID +K 
Sbjct: 562 LTEKKQADALIWKQAHFDHLTDLPNRLELKKRLNECFMRV-ENNAEQLVIMLLDIDHFKD 620

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L  +++RI E  K  + +AR+ G+ F I+         I   A  + 
Sbjct: 621 VNDTLGHHYGDALLKFVSQRILESAKNAEFVARIGGDEFVIVFSKIK-EQHIKQIAENIL 679

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            S++  I +   E+ ++ASIG AS  +    + ++LK A+ AMY AK  G N  E F   
Sbjct: 680 LSLSSAIYIENEELFISASIGIASAPNDGENTEQLLKAADQAMYKAKVNGRNGFEFFSHD 739

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                ++   + ++L  A+E  +  L Y PI+ L D  +   E LI+W HP+ G IS ++
Sbjct: 740 MREKAQMRMLLLKELRTAIELEQFELFYQPIVCLKDLHVHKAEGLIRWRHPEKGLISPAD 799

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQ 815
           F+ +AEE   I  +  F+  +  + +   +         + +N++   L   +   +   
Sbjct: 800 FIPLAEETRQINILGQFVFSQALQTLNDIKAHITN-DFQLSVNVSPIQLSTPDSGIDEWG 858

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A+++      S I    +E +++     ++  L  L + G+ L LDDFGT  S L+YL  
Sbjct: 859 AMLNAANLPASSIVAEITEGLMVNPEALTQSRLKALVQSGMQLALDDFGTGYSSLAYLQE 918

Query: 876 IPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +   +    +    ++   +II MA  +   +IA+ I  +  ++ L   GCD
Sbjct: 919 MDTDYLKIDKRFVDNINKGSQELVLCETIIVMAHQLGLKVIAEGIETKQQMQLLLEAGCD 978

Query: 934 YIQDSHVASPLGFNSILKLLK 954
           Y Q    + PL     + LL 
Sbjct: 979 YGQGYLFSKPLPKEQFMSLLT 999


>gi|160900822|ref|YP_001566404.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160366406|gb|ABX38019.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
          Length = 916

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 133/638 (20%), Positives = 269/638 (42%), Gaps = 33/638 (5%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A  L    + +        +  + R+   ++  A++   VL+  ++G+TV +++      
Sbjct: 273 AHPLPKGHLWVTASLPMSSVLASWRVAAWLMVLAVMIFGVLLA-VLGWTVHRYMDRLHAA 331

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLP 454
            +      +    A+          D  +  +        +    +  +    P+++ L 
Sbjct: 332 RRQAQRSEQWLDQALDSMVSGFLLLDSQQRVLRWNRCYEEMFPWHADQLEPGRPLQSLLD 391

Query: 455 YIHIN--------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                             + +    V       + +           ++ +  R ++  +
Sbjct: 392 SCPSAVGLAAAPAQAYEAKDLHRQLVLRPGVPFEQQL----PSG--RFVQMTAR-LAAED 444

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G     +   ND+T+ + +   I   AF D LT +PNR+  LDRL     L+A  +    
Sbjct: 445 G----VVITYNDVTDIRLATAEIESLAFYDPLTSLPNRRLLLDRLAQATVLAAR-EGWTG 499

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D++K +ND LG  VGD +L  +  R+   ++  D +ARL G+ F ++L   ++
Sbjct: 500 ALLFLDLDQFKMLNDTLGHEVGDQLLQQVAHRLRSAVRSSDTVARLGGDEFVVMLCELSH 559

Query: 627 SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                          +   +     L         SIG   +     +++E+LK A++AM
Sbjct: 560 EPAEAATLAQRIGEKILARLNQSYVLGAHLHRSACSIGATLFGRQPQSAAELLKQADIAM 619

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y  K R G+ +  F             ++ DL  A+  S+  L Y P   L   E++G E
Sbjct: 620 YQIKARNGSGLCFFDPQMQVEIHQRVRMEGDLRQALAQSQFELHYQPQFTLA-GEVIGAE 678

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +    F+ +AEE  +I  + ++++      +  W+  A +  + + +N
Sbjct: 679 ALLRWRHPERGLVPPGMFIAVAEESEIIVPLGMWVIRTACEQLAIWQKDARLRHLQVAVN 738

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++          +   +     +P  +KL  +ES+V+ N + S   + +LR  G+  +
Sbjct: 739 VSARQFRHQNFASQVIEQVRNAGIAPHLLKLELTESLVIENVQESIDKMKQLRSHGVCFS 798

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL  +P + +K + S +   G       I+++II MA+N+   +IA+ 
Sbjct: 799 MDDFGTGHSSLTYLTQLPLNQLKIDQSFVRHLGLRHTDDVIVQTIIGMARNLNLDVIAEG 858

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +        L   GC+Y Q    + P+   +  +LL +
Sbjct: 859 VETLEQRALLAHYGCEYFQGYLFSPPVPIRAFEQLLAK 896


>gi|330965054|gb|EGH65314.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 897

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 150/571 (26%), Positives = 268/571 (46%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGNK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L         D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFGRDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +          A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLHVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILKEEQLDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ L  R+P   + 
Sbjct: 868 DVGQGYLFDRPIPGEELIEKLT-RYPRRPSA 897


>gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 598

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 233/440 (52%), Gaps = 5/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   AF+D+LT +PNR  FL+RL   +D+     N    V+++D D++K IN
Sbjct: 155 ELEIANSKLRDMAFRDDLTNLPNRALFLERLADGIDVKQEHHNYNFVVLLLDCDRFKMIN 214

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG +VGD +L+++++R+  LLK  D LARL G+ F I++    +  +    A  + +S
Sbjct: 215 ESLGHSVGDQLLIAISKRLKSLLKPEDTLARLGGDEFAIMVNKIEDMAEAKAMAQKVLES 274

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            + P  L  +E+ +  SIG +           ML++A+ AMY AK  G      F  S  
Sbjct: 275 FSHPFVLPNQEVFINVSIGISGSHLDYQKPEHMLRDADTAMYRAKDLGKGQYHIFDPSMH 334

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  +++ I+ DL  A+ N E  + Y PII L   +I G EAL++W HP+   I    F+
Sbjct: 335 HNVSEKLQIENDLRRAINNDEFLVYYQPIIHLTTGKIAGFEALVRWQHPQKQLIHPVLFI 394

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQAL 817
            IAEE  +I AI   +LE+  +   SW+  +     +FI +N++++   + +L + +Q L
Sbjct: 395 PIAEETGLINAIGNLVLEKACKQFRSWQKSKLINDSMFISVNVSARQFANMDLSQQIQQL 454

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T   P  +KL  +ES +M NP+ +  +L   +K  + L++DDFGT  S LSYL    
Sbjct: 455 LEVTQLDPHCLKLEITESAIMDNPKTAVAILEGFKKQNVRLSIDDFGTGYSSLSYLHNFQ 514

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +        +  ++  I+ +AK ++  +IA+ +     +  L  + C++ 
Sbjct: 515 VDTLKIDKSFVQRMDNNGSSCGLVPVIVNIAKTMKMGVIAEGVETSEQLSLLRGLECEFA 574

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + PL  + +++L+  
Sbjct: 575 QGYLFSQPLPESLLMELIAA 594


>gi|218529510|ref|YP_002420326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
 gi|218521813|gb|ACK82398.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium chloromethanicum CM4]
          Length = 811

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/681 (20%), Positives = 272/681 (39%), Gaps = 17/681 (2%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
            +   I+      + + +         +AS     L   +        Y        + L
Sbjct: 125 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 184

Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397
             IP  +  FI        I   +   ++  A   G+ V  +  +    I   +     S
Sbjct: 185 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 244

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I             + D +W+ +        +P +A  LG     +       L    
Sbjct: 245 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 301

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +  ++  T L   +   +   +    +        W+ +  +P ++  G +  + G+ +
Sbjct: 302 EDRDEDRTTDLLGHLRQGKAFHECLVAIETPTG-LRWLALSGKPFADQRGTLAGFRGVGS 360

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T+++++   I   A +D LTG+ NR  F D        S      R  ++ +D+D +K
Sbjct: 361 DVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMR-GGPRVHLLYLDLDGFK 419

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND  G   GDD+L  +  R+   +     + RL G+ F  IL     S +    A A+
Sbjct: 420 KVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFA-ILHRSRESAEAEILAEAV 478

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S+  P  +   +  +  SIG A          ++++ A+LA+Y AK  G      F  
Sbjct: 479 IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEA 538

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      +   +   + N E+ L Y P++ L D E+VG EAL++W  P  G +S +
Sbjct: 539 DLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSPA 598

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           E + IAE    +  I  + L     + ++W       P+ + +NI+S      +  + ++
Sbjct: 599 ELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEVE 653

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A++  T  +P R+++  +ES+ + N       L  LR  G+ + LDDFGT  S LSYL  
Sbjct: 654 AVLDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLTQ 713

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + + +   +   + +A++++I+ +A ++   +  + +  E   + L    C+
Sbjct: 714 YPVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRCN 773

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q    +       +  L++
Sbjct: 774 SAQGFLYSPARPSGEVTGLIE 794


>gi|307313923|ref|ZP_07593538.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|306899197|gb|EFN29835.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 601

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 132/583 (22%), Positives = 259/583 (44%), Gaps = 35/583 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++  L      + +     + +  +   G  V  +D  +  + +    A + GL   
Sbjct: 6   LARVKGRLDLQQAQKQLDQRNMQFATTLENIGQGVCFFDADQRLILSNRRYAEVYGLPPE 65

Query: 444 SMHG--PIRNWLPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            +     +              +  +D           +  +      ++ +     +  
Sbjct: 66  MIKPGMTLSEITELRYAVGACPVVPHDE---YLAWCDAINSKSSP--QDWSMELKSGKVI 120

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            +         S+G    ++    DITE + +   I   A  D LT +PNR +   +L T
Sbjct: 121 RVHHE----RTSDG---GWVSTHEDITEHRNAERQIARLALHDPLTDLPNRAALKQKLDT 173

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +L+        +  V+ +D+D++K++ND+ G  VGD VL    +R+         +ARL 
Sbjct: 174 LLEQHQK-QGTQFAVLCLDLDRFKEVNDLFGHHVGDQVLCLAAKRVCATAV-GAFVARLG 231

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++  +E ++   A  A  +   ++    +    I +  S+G A + +    ++E+
Sbjct: 232 GDEFMVL--AEADASYAAQLADLIITILSEDAEIEGTRIRMGTSLGVAIFPADGDNAAEL 289

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           + NA+ A+Y AK  G      F     +   +R  ++ DL  A+   +L +VY P   + 
Sbjct: 290 MGNADAALYRAKADGRGTARFFEPQMDKWLRERRALQRDLQAAISQQQLSIVYQPQADI- 348

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +++G EAL++W+HP  GNI  S F+ IAEE  ++  I  ++L    R+  +W      
Sbjct: 349 GGDVIGFEALLRWNHPTRGNIPPSVFIPIAEESSLMIEIGEWVLREACREAAAWPR---- 404

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++       +L   +++++ +T   P R++L  +E V++ + ER+   LG L
Sbjct: 405 -KLSVAVNLSPVQFKHGDLDRLVKSVLIETGLEPERLELEITEGVLIDDLERAISTLGHL 463

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910
           + +G+ + +DDFGT  S LSYL   PFD +K + S +      +  AI+R++I + + ++
Sbjct: 464 KALGVRIAMDDFGTGYSSLSYLQSFPFDKIKIDQSFVRNIGLSQSSAIIRAVIGLGRGLD 523

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             IIA+ +     +  LTR  CD +Q   V  P   +   K +
Sbjct: 524 LPIIAEGVESTDQLAFLTRESCDQVQGYLVGRPRPISDYAKYV 566


>gi|52840532|ref|YP_094331.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627643|gb|AAU26384.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 740

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 143/568 (25%), Positives = 267/568 (47%), Gaps = 22/568 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453
           ++ +          +  S D +   D+    V        +  +    M     + L   
Sbjct: 180 TESLQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIMKKTSESQLIQY 239

Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                ++              +     ++ Y FR    + +   +    +P        +
Sbjct: 240 MSTQLLNSEQHAQHVKEFSIHIDDSSIQI-YHFR----NGKV--VECCSKPHR-VGPQTV 291

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +    DITEQ +  E +   A  D LT +PNR   +DR+   +   A    ++  ++ 
Sbjct: 292 GRVWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISSYARH-KMKFAILF 350

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            D+D++K IND L    GD +L ++ +R+  L++  D LARL G+ F ++  S N+  +I
Sbjct: 351 FDLDRFKMINDSLSHEAGDQLLCAVAKRLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQI 410

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  + KS   P ++ ER+I +  SIG + + +   T + +L NA++AMY AK RGGN
Sbjct: 411 AGVAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGN 470

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +    +   + +  ++ DL  A+ + E +L+Y P   +   EI  +EALI+W+HP+
Sbjct: 471 QFSFYTEKLNKKTNQQFQLELDLQKAIIHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQ 530

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I   +F+  AE   +I  I  ++L    + I +WR    +P I +  N+ASK L   
Sbjct: 531 KGIILPLDFIPTAESSGLIVPIGEWVLRETCKQIGTWR-TMGLPEIRVACNVASKQLRQR 589

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    ++ L+ +    P  ++L  +E+V++   +  +  + +L+ +G+ + LDDFGT  S
Sbjct: 590 DFPAMVEDLLKEYSVKPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNS 647

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L  +  D++K + S +     +    AI+ +II +A+++   IIA+ +  +  +K 
Sbjct: 648 SLNLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKF 707

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L +  C+ IQ   ++ P+    I KLL+
Sbjct: 708 LKKRRCNDIQGFLMSKPIPSEEIEKLLQ 735


>gi|95930082|ref|ZP_01312821.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133776|gb|EAT15436.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 954

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 149/581 (25%), Positives = 263/581 (45%), Gaps = 20/581 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LA 441
           F +I  + A     Q I  + E     +    D V   D  R           +    L 
Sbjct: 373 FLIIHDITAQKNARQQIQKEHEFFQTVIDNMVDPVLVLDTSRHIKKANRAALALADGKLD 432

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                     +       D  +    + + +   +     E      D++     I+  P
Sbjct: 433 DPEEVCCYEAFQRGSLPCDCRSKSCPMHTVLKTGKPASIIE----HIDSKNKIYEIQAAP 488

Query: 502 MSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             + +G++L  I    DIT++        +    I      DNLTG+PNR   LDR+   
Sbjct: 489 YFDESGNMLGVIESFRDITKRLEVENSLIEQERKIYDLTHYDNLTGLPNRSVLLDRVNQA 548

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +    N    ++ + +D++KKIN+ LG  VGD +L  + +R+  L+     +A+ SG
Sbjct: 549 IYHALI-KNTHLALISLTLDRFKKINETLGHHVGDCLLQEVAQRLNTLVPQGQTVAKDSG 607

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F I+L        + D A  + K I    +    E+  + S+G A +      S+E+L
Sbjct: 608 SQFFILLEEVPQQEDVVDLADVVLKGIKQSFHANGHELIPSCSLGIAFYPEQAENSTELL 667

Query: 675 KNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
             A++AM  +K     G   V   +        + ++ DL  A+EN +L++ Y P   L 
Sbjct: 668 ARADVAMRTSKDDMGGGAVTVYDPKYGEIAPQSLRMEADLKHAIENDKLHIHYQPQFNLE 727

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           ++ +VG EAL++W+HP  G +S  EF+ +AEE  +I ++  ++L ++ + I SW      
Sbjct: 728 NDVLVGFEALVRWNHPAEGPVSPGEFIPLAEETGLIHSLGRWVLRQVCQQIHSWEQAGIS 787

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++S  +  N     ++  +++   +   I+L  +ES VM   E+S  LL  +
Sbjct: 788 V-VPVAVNVSSLQMKKNNFVHILEECLNEFQITAQLIELEITESAVMDRLEKSMELLSAI 846

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R +G+ L +DDFGT  S LSYL   PF  +K + S +      E   AI+ +II MAK++
Sbjct: 847 RGLGVKLAIDDFGTGYSSLSYLKSFPFSKLKIDRSFVMDLENDENDAAIITAIISMAKSL 906

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               IA+ +  E+  + L + GCD +Q   ++ PL   +I 
Sbjct: 907 GLKTIAEGVETELQKQFLIKHGCDEVQGFLMSRPLPVEAIE 947



 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 60/173 (34%), Gaps = 11/173 (6%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
               D  I+           V+   F  +++ +      + +    ++          I+
Sbjct: 228 QGDYDQAILTYRENAQNEFDVLANAFYEMKNAVKGR--EERLRQKRQQIYSMFHVHQSIM 285

Query: 419 WDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +  D+     +          G+++ ++          +H  DR     +L   +  R+ 
Sbjct: 286 FLVDVENYHVLDANVAAERFYGMSAQALKAKC---FYGLHGLDRQELAELLTVCLNGRQE 342

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            ++  ++      +   + +R+ P+ + +     ++ I +DIT QK + + I 
Sbjct: 343 FIELPYQDV---GELRCLEVRLSPV-DVDQKACLFL-IIHDITAQKNARQQIQ 390


>gi|120603292|ref|YP_967692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio vulgaris DP4]
 gi|120563521|gb|ABM29265.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Desulfovibrio vulgaris DP4]
          Length = 951

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 143/585 (24%), Positives = 257/585 (43%), Gaps = 10/585 (1%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            +  IG  + + +      +  +  +     L    + D +    +     +     A +
Sbjct: 356 EIAAIGHAINRLIRDREQAAHTLQENEAFFRLLYEQAPDAMLLL-LDESIASANDAAARL 414

Query: 438 LGLAS--GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHW 494
           LG+A     +  P+  + P        +              G  ++E+    +      
Sbjct: 415 LGVADRKDLLSHPLIEFFPPAQEGGIPSVEGFARQVENTTPLGNRRFEWIFMRSGGSEVP 474

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             + + P+      +L     A DI+E+K++   I   AF D+LTG+ NR  FLDRL   
Sbjct: 475 CEVTLSPVMQRGRRMLHL--TARDISERKRNEAQITHLAFHDSLTGLANRVLFLDRLAHA 532

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +       +    V+ ID+D++K IND LG A GD +L  +   I   ++  D +AR+SG
Sbjct: 533 IATCRRAPDRNFAVLFIDLDRFKVINDSLGHAAGDGLLSIIASAIAANIRETDTVARISG 592

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++    +       A  + + I  P+ +   E+ ++AS+G     S      ++L
Sbjct: 593 DEFTVLVHEPPSPRFAIKMARRILERIKQPLTIEGFELVISASMGIVIGNSGYTDPHQVL 652

Query: 675 KNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A++AMY AK  G + +  F  R+       + ++ DL  A++N +L   Y PI+ L  
Sbjct: 653 RDADIAMYKAKRAGKDKLRVFGSRMHEQALHAMRLENDLRQAIDNGDLSCHYQPIVNLES 712

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL +W HP  GNI  S F+ IAE+   I  +   ML +      S R      
Sbjct: 713 GALEGFEALARWQHPTLGNIPPSTFIPIAEDTGRIIPLGRAMLHKACAFAASIRGTLPQG 772

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N++ +  L  +L   ++A +  T   P  + L  +ES++M NP  ++ ++  L+
Sbjct: 773 DPVIHVNLSPRQFLSRQLLREVEAALDATGLPPELLVLEITESLLMENPRVAKSIMAGLK 832

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE 910
           +IG+ L+LDDFGT  S L  L   P D+VK + S +    +      I+R+I+ +  ++ 
Sbjct: 833 EIGVRLSLDDFGTGYSSLGSLQDYPLDSVKIDRSFIRAMNDGRDAEHIVRAILKLVSHLR 892

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              I + +   +    L   G   +Q    A P+       LL+ 
Sbjct: 893 LEAICEGVETTMQAANLMAFGATRMQGFLFAKPMPSEKARSLLER 937


>gi|229193601|ref|ZP_04320545.1| Sensory box protein [Bacillus cereus ATCC 10876]
 gi|228589906|gb|EEK47781.1| Sensory box protein [Bacillus cereus ATCC 10876]
          Length = 835

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 170/794 (21%), Positives = 336/794 (42%), Gaps = 35/794 (4%)

Query: 191 YRGIIIGVASLLAIFLTI-FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV--NLPS 247
           +  I   +  +      I  Y +   +          ++  Y ++ F             
Sbjct: 46  FFIIQYVLLFVGFAIKFIKIYSIKGLAQFSFDSIFIVIMNIYFTLTFILDLSSFRMLTKE 105

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   +     LF ++F      
Sbjct: 106 TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSP 165

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 166 EFNYLIHTASILLIGLSSILYILDKPMQHETKAKYYRFDYVRFILPYFSIIITFSFIIIQ 225

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      +++       Q        +  +    +R
Sbjct: 226 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALILTYEQLTTQLEDEVEEGAFALSKSEQR 285

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + + +I   D +  + 
Sbjct: 286 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 343

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 344 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 400

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 401 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 459

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  +   +  P  
Sbjct: 460 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 519

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 520 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 579

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 580 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 639

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 640 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 698

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 699 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 758

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + + L +  CD+IQ   ++ 
Sbjct: 759 REFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETEEEWEFLHKQNCDHIQGFFISK 818

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 819 PVSSKDVWMLLHKK 832


>gi|21221267|ref|NP_627046.1| hypothetical protein SCO2817 [Streptomyces coelicolor A3(2)]
 gi|289771443|ref|ZP_06530821.1| sensory box/GGDEF family protein [Streptomyces lividans TK24]
 gi|14799963|emb|CAC44280.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289701642|gb|EFD69071.1| sensory box/GGDEF family protein [Streptomyces lividans TK24]
          Length = 634

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 136/595 (22%), Positives = 263/595 (44%), Gaps = 37/595 (6%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
           G   + + ++          +   +   D     V+    + T+LG    ++ G +   L
Sbjct: 24  GLAPRAVRTEPPAYRSVFTTAPLAMAVVDAEGLVVSANDTLGTLLGTDPDALAGSVAADL 83

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--- 510
             +  +            +   R RL+   R++ AD    W  + + P++   G      
Sbjct: 84  VDLASD--AGTWHAYREVLRGHRPRLRCTRRLKRADGHSLWAQVTVEPLAGPGGSGGSGD 141

Query: 511 ----RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNL 564
                 +    D++ +++    +      D +T +PNR  F +RLT  L+          
Sbjct: 142 GDAPGLLLSVADVSARRELQARLRHLQMHDPVTRLPNRALFFERLTAALEAESYEHGGTG 201

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRF 617
           R  V  +D+D +K +ND  G  VGD +L ++  R+    +          ++ARL G+ F
Sbjct: 202 RIGVCYLDLDGFKAVNDTHGHRVGDRLLAAVAERLTRCAEEAAHARSGAPLVARLGGDEF 261

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +++     + ++AD A A+  ++  P  L +R ++VTAS+G     ++  T + +++ A
Sbjct: 262 ALLVEDSTGTDQLADLAGAVLAALQPPFELSDRRLSVTASVGVVERHTAGTTPTALMQAA 321

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +  +Y AK  G      F      +      +   L  A+E  E  L Y P++ + D  +
Sbjct: 322 DTTLYWAKADGRARWTLFDPERNANRMTRQALAATLRPAIERGEFALEYQPLVGMEDGRV 381

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPI 794
            G+EALI+W+HP++G ++ + F+ +AEE   I  +  ++L         W+      PPI
Sbjct: 382 RGVEALIRWNHPQFGVLAPNRFIALAEEDGSIVPLGRWILRTACHQARRWQLAHPDEPPI 441

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           F+ +N+A + + D++L   +   + +T  +P  ++L  +ES VMG+  R   +L  L  +
Sbjct: 442 FVSVNVAVRQVWDSDLVADVARTLEETGLAPELLQLELTESAVMGSAGRPLQVLKALSDM 501

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG----------------STEKRIAI 898
           G+ + +DDFGT  S L+YL  +P   +K +G+ + G                +      I
Sbjct: 502 GVHIAIDDFGTGYSNLAYLSRLPVSVLKLDGAFVRGFQYDAVSDAAACGAGGANPADEVI 561

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +++ +A  +  T+ A+ +        L R+GCD  Q    + P+  + I  LL
Sbjct: 562 VEAMVQLAHRLGLTVTAECVETSAQATRLRRIGCDTGQGWLYSRPVAPDRISALL 616


>gi|46580837|ref|YP_011645.1| sensory box protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450257|gb|AAS96905.1| sensory box/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
            str. Hildenborough]
 gi|311234538|gb|ADP87392.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris RCH1]
          Length = 1413

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 223/438 (50%), Gaps = 7/438 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K++ E +   A  D+LTG+PNR   L+R+      S         VM+ID+D++K IN
Sbjct: 957  ERKQNEEQLTYLALHDSLTGLPNRTLLLERIEQARLRSLRGKGRSFAVMMIDLDRFKIIN 1016

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G AVGD +L  ++  +  +L+  D +ARL G+ F I+L       ++   A  + K+
Sbjct: 1017 DSHGHAVGDRLLQMVSAAVRPVLRPADTVARLGGDEFAILLEDVATPREVVHVARRVIKA 1076

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
            +  P  +  + +  +AS+G    T    ++ E+L++A++AMY AK +G      F   + 
Sbjct: 1077 VERPARVANKLLRTSASVGIVLRTDGYGSADELLRDADIAMYQAKEQGRGRFRVFNRTMH 1136

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                D + ++ DL  A+   +  L Y P+       ++G EAL++W HP  G I  + F+
Sbjct: 1137 QQAMDAMNLENDLGAALRWGQFELDYQPVFDTRSRALLGFEALVRWRHPLRGLIPPTAFI 1196

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817
             +AEE  +I  +  ++LE     +  WR Q      +++ +N+++       L   ++  
Sbjct: 1197 PVAEETGIITRLGHWVLETALTALARWRLQIPGIDDLYVAVNMSALQFAQPTLPGSVRDA 1256

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + KT    S +K+  +E+ +M +P  +   +  LR +G+ + +DDFGT  S L+YL   P
Sbjct: 1257 LQKTGLPASCLKVEITETAIMQDPTTALQRISALRDLGVGIGIDDFGTGYSSLAYLQRFP 1316

Query: 878  FDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             DT+K + S ++ ST    E    I+R+++ +A ++   ++A+ +  E     L  +GCD
Sbjct: 1317 VDTLKVDRSFVSQSTTPEGEGNREIVRAVVVLAHSLSLAVVAEGVETEEQFAFLAGLGCD 1376

Query: 934  YIQDSHVASPLGFNSILK 951
             +Q   ++ P+    I  
Sbjct: 1377 AVQGYLLSRPVPEADIPA 1394



 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             VI+ V       + +    ER  +A+  + + +W+WD+    +  +P    ILG    
Sbjct: 659 IQVIRDVTERRIELEALAKSRERYQMAIEATNEGIWEWDVTTGELYHSPRCVEILGRGGA 718

Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           S    +   L   +H +DR    T+  S +     R   E R+R     + W++      
Sbjct: 719 SAPDTLLRDLSLQVHPDDRLRMVTLTQSLMTEPVERFSLECRMRHPVQGWRWVLCHGVVQ 778

Query: 503 SNSNGDILRYIGIANDITEQKK 524
            N +G   R  G   DITE+K+
Sbjct: 779 RNGSGGPRRITGSIADITERKQ 800



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 1/135 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q + +   R    +  +   ++        V    ++A + G +S             I
Sbjct: 403 RQRVEAIHHRYMSILDNAPVGIFRIMPDGSMVGANREMARLWGFSSPEELLASEEARRLI 462

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +D           +    G +  E   R  D +    ++  R +   +       G  
Sbjct: 463 LCDDPKACPLSFAR-IAASGGLVNEEVLCRTRDGRSFTGLVSARAVPQDDDVQSYVDGFL 521

Query: 517 NDITEQKKSLEGILC 531
            DI++ K++ + +  
Sbjct: 522 LDISQLKEARDKLRQ 536



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 16/155 (10%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +         +       +  +    D     D     V     +  + G+A+  M 
Sbjct: 521 LLDISQLKEARDKLRQTSRNLADIIDFYPDATLVVDAAGRLVAWNRAMEELTGIAAADMI 580

Query: 447 GPIRN------WLPYIHI-----NDRDNFRTILDSFVGYRRGRLQYEFRV---RAADNQF 492
           G          +   I I      D         S +     R+  E  +   R     F
Sbjct: 581 GKGDYEYALPFYGERIPILCDLLRDPAIIPAARYSLLEQTEHRIVVELPLPFFRKGRGLF 640

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            W       +++ +G +   I +  D+TE++  LE
Sbjct: 641 VW--TAASALTDEHGKVTAVIQVIRDVTERRIELE 673


>gi|163850760|ref|YP_001638803.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662365|gb|ABY29732.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 811

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/681 (20%), Positives = 273/681 (40%), Gaps = 17/681 (2%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
            +   I+      + + +         +AS     L   +        Y        + L
Sbjct: 125 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 184

Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397
             IP  +  FI        I   +   ++  A   G+ V  +  +    I   +     S
Sbjct: 185 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 244

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I             + D +W+ +        +P +A  LG     +       L    
Sbjct: 245 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 301

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +  ++  T L   +   +   +    +        W+ +  +P ++  G +  + G+ +
Sbjct: 302 EDRDEDRTTDLLGHLRQGKAFHECLVAIETPTG-LRWLALSGKPFADQRGTLAGFRGVGS 360

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T+++++   I   A +D LTG+ NR  F D        ++     R  ++ +D+D +K
Sbjct: 361 DVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEAC-TASMSGGPRVHLLYLDLDGFK 419

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND  G   GDD+L  +  R+   +     + RL G+ F I+     ++      A A+
Sbjct: 420 KVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAE-AEILAEAV 478

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S+  P  +   +  +  SIG A          ++++ A+LA+Y AK  G      F  
Sbjct: 479 IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWHCFEA 538

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      +   +   + N E+ L Y P++ L D E+VG EAL++W  P  G +S +
Sbjct: 539 DLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSPA 598

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           E + IAE    +  I  + L     + ++W       P+ + +NI+S      +  + ++
Sbjct: 599 ELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEVE 653

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A++  T  +P R+++  +ES+ + N       L  LR  G+ + LDDFGT  S LSYL  
Sbjct: 654 AVLDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLTQ 713

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + + +   +   + +A++++I+ +A ++   +  + +  E   + L    C+
Sbjct: 714 YPVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRCN 773

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q    +       +  L++
Sbjct: 774 SAQGFLYSPARPSGEVTGLIE 794


>gi|103487670|ref|YP_617231.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
 gi|98977747|gb|ABF53898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingopyxis alaskensis RB2256]
          Length = 729

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 146/578 (25%), Positives = 270/578 (46%), Gaps = 18/578 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAV-----LGSGDIVWDWDIVRDRVTTTPDIATI 437
           GF       AT        +   R++L +            W  D        T  +A  
Sbjct: 23  GFFGRIGSRATRRRGDAAANLQTREALLLLQNYEESGRGWFWSTDADGRLTYITDVVART 82

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G ++ ++ G     L ++  +     +  L   +  +        R  A +    W  I
Sbjct: 83  MGRSAAALLGTPLTDL-FLPADSHGERQRTLRFLLTRQSAFDDLPLRG-AFEGGDRWWAI 140

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             RP  +++G    Y G   DIT Q++S E     A  D+LTG+ NR +   +L   L  
Sbjct: 141 SGRPQYDADGQFTGYRGSGTDITAQRRSAEDASRLALYDSLTGLANRFNISKKLDATLAA 200

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A        +M++D+D++K++ND LG   GD +L  +  R+ + +   ++++RL G+ F
Sbjct: 201 FAQQQR-SCAIMLLDLDRFKQVNDTLGHPAGDALLKQVAERLLKFVGDKEMVSRLGGDEF 259

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            IIL   ++  K+ D A  +  S++ P ++      + AS+G A       +S ++++NA
Sbjct: 260 QIILPDIDDRGKLGDMAADIIASLSQPYSVEGSRCIIGASVGVAIAPFDGQSSDDLVRNA 319

Query: 678 ELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LA+Y AK  G       S  +     DR  ++EDL  A+   E+ L Y P++      +
Sbjct: 320 DLALYAAKGNGCGRFAFYSSDLHQAAEDRRALEEDLRDALARGEIALAYQPVVNARSNMV 379

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EALI+W H   G IS + F+ IAEE  +I  +  ++L +   D   W  +     + 
Sbjct: 380 TGVEALIRWTHRDRGAISPALFIPIAEEANLIWPLGEWVLRKACEDAAGWPGE-----MR 434

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++     + EL + +   ++ +  SP R++L  +ESV +G+   +  +   L+ +G
Sbjct: 435 VAVNVSPIQFANPELPKVVAKALAASGLSPDRLELEITESVFLGDTAEANRMFKALKGLG 494

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETT 912
           + L LDDFGT  S L+YL   PFD +K + S + G+TE   +  AI+ +I+ +A+ ++  
Sbjct: 495 VRLALDDFGTGYSSLAYLQSAPFDKIKIDQSFVRGATEPGSRNSAIIAAIVALAEALDME 554

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             A+ I     +  + ++   ++Q    + P+    ++
Sbjct: 555 TTAEGIESLDQLDLVRKLNVSHVQGYVYSRPVPCADLV 592


>gi|325982380|ref|YP_004294782.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531899|gb|ADZ26620.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 813

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 136/579 (23%), Positives = 268/579 (46%), Gaps = 15/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++Q           +       +     S + +   +  +          ++      
Sbjct: 238 VGILQETTENRLAKDRLAQA----ATVFECSTEGIIILNKNKLVDCANNAFYSMTQYQER 293

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++      +L   H +   N    L   V    G  + E +    + +  ++ + I  + 
Sbjct: 294 NLKNKELPFLT--HRSLNGNIYEDLWHSVET-HGCWRGEIKAFKRNKEIMYIWLTIGLIP 350

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G   +++ + +DIT+ +++ E +   A+ D+LT +PNR   +DRL   +  +A D +
Sbjct: 351 VETGMEKQFVVMISDITKIRETQEQLAHFAYYDSLTNLPNRILIMDRLNQAIAKAARDSS 410

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   ++ ID+D +K+IND LG   GD +L  +++RI  +L+  D L RLSG+ +  +  +
Sbjct: 411 L-LGILFIDLDNFKRINDTLGHKHGDSMLCLISQRILSVLRQSDTLGRLSGDEYIAVAGN 469

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   +   A  +   I+ P+ L   EI  + SIG + +         +++ A+ AMY 
Sbjct: 470 VESYDALIRIAGKILDCISKPVVLSNMEIIPSCSIGISVYPHHSENPDHLVQMADTAMYE 529

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +    +   +  +  + +L  A+ N E  L + P   L+++EI+G+EAL
Sbjct: 530 AKKNGRNNYAFYHPGLTQRAAHHLTRERELHHALINDEFLLYFQPQFSLINKEIIGVEAL 589

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HPK G +  +E + +AE   +I  I  ++L+   + +  WR       + + +N++
Sbjct: 590 IRWKHPKRGLLLPAEIIPVAETSRLIIDIGNWVLKEACKQLHQWRTDGLD-NLRMSVNVS 648

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + L DN L + +  L+ +       ++L  +ES +  N       L +L+K+GI +++D
Sbjct: 649 IRQLADNNLQKFIAKLLHQYSLPAHSLELEITESCL-QNELIYISCLEQLKKLGILISID 707

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L  +P   +K + S + G    +   AI  +++ +A+ +   + A+ I 
Sbjct: 708 DFGTGYSCLSSLKNLPIHRLKIDQSFVKGIPLDKNDCAIATAVLALAQKLNLQVTAEGIE 767

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
               I  L   GC+ +Q   ++ P+    I  L+++ FP
Sbjct: 768 TYDQITFLLGHGCNELQGYWLSKPVSPKHIPDLIRD-FP 805



 Score = 58.0 bits (139), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 9/137 (6%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIH 457
           +    +   LA+  +    W+      +V              G +       ++   I 
Sbjct: 130 LKKSEQHLRLALEAARMGTWEVTKASQKVFMGKS-------PRGDLEPITDWESFFLTID 182

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D+      +D     +    + EFRV  +  +  W  +  +   N +    + +GI  
Sbjct: 183 NSDKSKVCDFIDKLCAKKGYAAEIEFRVTTSAGKICWYKLYGKSFENGSSAQYQVVGILQ 242

Query: 518 DITEQKKSLEGILCNAF 534
           + TE + + + +   A 
Sbjct: 243 ETTENRLAKDRLAQAAT 259


>gi|256822113|ref|YP_003146076.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
 gi|256795652|gb|ACV26308.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kangiella koreensis DSM 16069]
          Length = 1012

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/584 (20%), Positives = 250/584 (42%), Gaps = 16/584 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           LI    I  +       + + +  E     V  + D +  +D        +  +  +LG 
Sbjct: 419 LIEVGTISDITHRKVMERELINKEEYYRALVENAFDGIVLYDEKGRVQFLSKSVEKLLGY 478

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRI 499
            +  +    +  + +I  +D +  R      + +     +  ++R+   D    W+   +
Sbjct: 479 KAEDV--TNKTGIDFIFPSDLELVRKAWHWAMAHPNQIYRIPDYRLVKKDGGLIWVENTL 536

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + + +  +   I    DI+ +K + + I   +  D LT +PNR     ++   +    
Sbjct: 537 INLLD-DPVVSGIISNFRDISHKKSAEQSIYKISNYDALTELPNRHFLRQQIERQIKRYQ 595

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +     +++  DI +   IN+ +G  VGD VL  + R I E L   D++AR   + F +
Sbjct: 596 KEPQ-SISLVYFDIVQLNGINNAMGHWVGDQVLHYVARVIRENLDEFDLIARSGNDEFAV 654

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L  E    +++     +  S    I + E ++ V+   G A +     ++ ++L  AE+
Sbjct: 655 VLT-EQEPFEVSQLVERILSSFENIIRIGELDLKVSIRAGIARFPEDADSAEDLLSRAEI 713

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+   K+    +       S        ++ +L  A+++  L L Y P + L    I  +
Sbjct: 714 AVGRVKNLSTQYTFFQPQDSESISYRINLERELVQAIDDQSLELFYQPKVCLRTGVIESV 773

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G IS    + IAE   +I  +  ++++   + I  W ++       I +
Sbjct: 774 EALLRWNHPESGYISPQTIVNIAEANSLIYKLTSWVVDNAIKQIKDWSEKGLNT--RIAV 831

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++++D+        ++  + K     + + +  +ES  M + E S   L +L  +GI +
Sbjct: 832 NLSARDIQRAGFEADIRQSLEKYQVDSTLLDIEITESAAMADMEHSVQTLRQLSDLGIGI 891

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-------KRIAILRSIIPMAKNIET 911
           +LDDFGT  S +SYL  +P D VK + + + G  +           I+++II +A++ + 
Sbjct: 892 SLDDFGTGYSSISYLASLPVDLVKIDQTFIQGLKQASEQAVKDNQLIIKNIIRLAESFKL 951

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + + I      + L +  CD  Q    + P     I  LL++
Sbjct: 952 VSLVEGIETVEQCRLLQKYNCDLGQGFLFSRPKSAKDIEPLLRK 995



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 4/148 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT-PDIATILGLAS 442
             V + V         + +        +  S D+++ +D  +  +       A  LG   
Sbjct: 291 IAVARDVSKRQKVMDELDTSKRFMQDIINTSPDVIYVFDFEKGLIIDGADRFARYLGYGG 350

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRP 501
                   + L  IH +D D  +      +       ++ E R + A  ++ W+    + 
Sbjct: 351 DEFE-SWDSVLKIIHPDDSDILKERGAKIMNSNSDEVIKSEGRFKNAKGEWVWLKNHCKI 409

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEG 528
           +   S G+ L  +G  +DIT +K     
Sbjct: 410 VKRTSQGEPLIEVGTISDITHRKVMERE 437


>gi|320332728|ref|YP_004169439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Deinococcus maricopensis DSM 21211]
 gi|319754017|gb|ADV65774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Deinococcus maricopensis DSM 21211]
          Length = 756

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 133/660 (20%), Positives = 266/660 (40%), Gaps = 50/660 (7%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAIT-KRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           G         A +L         + +   R  +D+    L+    L  + +     +  +
Sbjct: 105 GDPHIRFYAGAPLLTPDGLAIGSLCVLDTRARHDVSAEQLLTLQDLAAMTMEALETRLTV 164

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR------DRVTTTPDIATILGLASGSM 445
                ++      E    A+  + D V                          G A+  +
Sbjct: 165 EARAAAESQLHLME---AALANATDAVLILSADATSGSGLRVAYVNAAFERQSGYAATDV 221

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     L   H       R  L             + +    +   +W    + P+ ++
Sbjct: 222 EGRDPAVLWRAHRETTARLRGALSRAAAD-----VLDMQFDHRNGNVYWAETSVSPLRDA 276

Query: 506 NGDILRYIGIANDITEQKKSLE-------------------------GILCNAFQDNLTG 540
            G +   + +  D T++++  E                             +A  D LTG
Sbjct: 277 GGQVSHLLLLKRDNTDRRREEEHLRTTGMELAQRVLERTREVQHLTVQREHDALHDTLTG 336

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PN   F  RL  IL  +    +    V+ +D D++K +N+ LG +VGD +LV+  RR+ 
Sbjct: 337 LPNWTLFNLRLQAILRSA----DPTFAVLYLDCDRFKVVNETLGHSVGDALLVAFARRLE 392

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            L++  D +ARL G+ F ++L S +     +  A    ++   P  +    +   ASIG 
Sbjct: 393 ALVRPTDTIARLGGDEFVVLLESLDEPDIASLVAERFARAFTAPFQVGPHTLYFGASIGV 452

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718
               +    + +++++A++AMY AK  G     +F      +      ++ +L  A+   
Sbjct: 453 VVGGAHYQHADDVMRDADIAMYSAKRAGRGAFVTFHEQMRPNTNTQLLLEAELRAALAAD 512

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +L + + PI+ +    + G EAL++W     G +S +EF+ IAEE  +I  ++ ++L   
Sbjct: 513 QLTVHFQPIVHIPTSRVHGFEALVRWPR-GGGMMSPAEFLPIAEETGLIVDVDRWVLREA 571

Query: 779 ARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
            R + +WR        + + +N++S+     +L + ++  +  + +    +K+  +E +V
Sbjct: 572 CRHMAAWRTTLPNTDQLTLSVNLSSQQFTRPDLVDAVRTALHASGFPAELLKVEITEGLV 631

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KR 895
           M   +     +  L+ +G+ L +DDFGT  S L YL       +K + S M G  +    
Sbjct: 632 MERSDVVTTNIAGLKALGVGLHIDDFGTGYSSLGYLQRFDAQALKIDRSFMGGVEDRADS 691

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++R+I  MA N+  +++A+ +     +  L  +GC+Y Q   ++ P+    +  LL+ 
Sbjct: 692 AELVRTITAMAHNLGLSVVAEGVETRAQLALLRSLGCEYAQGFLLSRPIPVQDVPALLER 751


>gi|120601850|ref|YP_966250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris DP4]
 gi|120562079|gb|ABM27823.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfovibrio vulgaris DP4]
          Length = 1413

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 223/438 (50%), Gaps = 7/438 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+K++ E +   A  D+LTG+PNR   L+R+      S         VM+ID+D++K IN
Sbjct: 957  ERKQNEEQLTYLALHDSLTGLPNRTLLLERIEQARLRSLRGKGRSFAVMMIDLDRFKIIN 1016

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G AVGD +L  ++  +  +L+  D +ARL G+ F I+L       ++   A  + K+
Sbjct: 1017 DSHGHAVGDRLLQMVSAAVRPVLRPADTVARLGGDEFAILLEDVATPREVVHVARRVIKA 1076

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
            +  P  +  + +  +AS+G    T    ++ E+L++A++AMY AK +G      F   + 
Sbjct: 1077 VERPARVANKLLRTSASVGIVLRTDGYGSADELLRDADIAMYQAKEQGRGRFRVFNRTMH 1136

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                D + ++ DL  A+   +  L Y P+       ++G EAL++W HP  G I  + F+
Sbjct: 1137 QQAMDAMNLENDLGAALRWGQFELDYQPVFDTRSRALLGFEALVRWRHPLRGLIPPTAFI 1196

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817
             +AEE  +I  +  ++LE     +  WR Q      +++ +N+++       L   ++  
Sbjct: 1197 PVAEETGIITRLGHWVLETALTALARWRLQIPGIDDLYVAVNMSALQFAQPTLPGSVRDA 1256

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + KT    S +K+  +E+ +M +P  +   +  LR +G+ + +DDFGT  S L+YL   P
Sbjct: 1257 LQKTGLPASCLKVEITETAIMQDPTTALQRISALRDLGVGIGIDDFGTGYSSLAYLQRFP 1316

Query: 878  FDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             DT+K + S ++ ST    E    I+R+++ +A ++   ++A+ +  E     L  +GCD
Sbjct: 1317 VDTLKVDRSFVSQSTTPEGEGNREIVRAVVVLAHSLSLAVVAEGVETEEQFAFLAGLGCD 1376

Query: 934  YIQDSHVASPLGFNSILK 951
             +Q   ++ P+    I  
Sbjct: 1377 AVQGYLLSRPVPEADIPA 1394



 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             VI+ V       + +    ER  +A+  + + +W+WD+    +  +P    ILG    
Sbjct: 659 IQVIRDVTERRIELEALAKSRERYQMAIEATNEGIWEWDVTTGELYHSPRCVEILGRGGA 718

Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           S    +   L   +H +DR    T+  S +     R   E R+R     + W++      
Sbjct: 719 SAPDTLLRDLSLQVHPDDRLRMVTLTQSLMTEPVERFSLECRMRHPVQGWRWVLCHGVVQ 778

Query: 503 SNSNGDILRYIGIANDITEQKK 524
            N +G   R  G   DITE+K+
Sbjct: 779 RNGSGGPRRITGSIADITERKQ 800



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 1/135 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q + +   R    +  +   ++        V    ++A + G +S             I
Sbjct: 403 RQRVEAIHHRYMSILDNAPVGIFRIMPDGSMVGANREMARLWGFSSPEELLASEEARRLI 462

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +D           +    G +  E   R  D +    ++  R +   +       G  
Sbjct: 463 LCDDPKACPLSFAR-IAASGGLVNEEVLCRTRDGRSFTGLVSARAVPQDDDVQSYVDGFL 521

Query: 517 NDITEQKKSLEGILC 531
            DI++ K++ + +  
Sbjct: 522 LDISQLKEARDKLRQ 536



 Score = 47.6 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 20/157 (12%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  +         +       +  +    D     D     V     +  + G+A+  M 
Sbjct: 521 LLDISQLKEARDKLRQTSRNLADIIDFYPDATLVVDAAGRLVAWNRAMEELTGIAAADMI 580

Query: 447 GPIRNWLPYIHINDRDNFR-------------TILDSFVGYRRGRLQYEFRV---RAADN 490
           G              +                    S +     R+  E  +   R    
Sbjct: 581 GKGDYEYAL--PFYGERIPILCDLLRNPAIIPAARYSLLEQTEHRIVVELPLPFFRKGRG 638

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            F W       +++ +G +   I +  D+TE++  LE
Sbjct: 639 LFVW--TAASALTDEHGKVTAVIQVIRDVTERRIELE 673


>gi|237802331|ref|ZP_04590792.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025188|gb|EGI05244.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 897

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 149/564 (26%), Positives = 266/564 (47%), Gaps = 12/564 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +           AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATIALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGRK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L  + +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLL-DDTDQEAGQAIASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPIHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFGH-LQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 ASILKEEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+    +++ LK  
Sbjct: 868 DVGQGYLFDRPIPGEELVEKLKRY 891


>gi|332529366|ref|ZP_08405327.1| hypothetical protein HGR_05631 [Hylemonella gracilis ATCC 19624]
 gi|332041164|gb|EGI77529.1| hypothetical protein HGR_05631 [Hylemonella gracilis ATCC 19624]
          Length = 811

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 150/568 (26%), Positives = 249/568 (43%), Gaps = 18/568 (3%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E    A      +GD +   D  +           I G     + G    ++L 
Sbjct: 251 ERVQAEEHLRQAAVVFETTGDGILILDREQRVCMGNKAFERITGWRVQEVLGQRPDDFLH 310

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                DR              +  +Q E   R  DN        + P+ +  G +  Y+ 
Sbjct: 311 ASRSGDRRRVVAT------DDQDSIQVEITCRRRDNSLFPAWEGLSPVIDRVGKLTHYVL 364

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDI 573
              DI+  +     +   A  D LTG+ NR      L   +  +A+  D+    ++ ID+
Sbjct: 365 TFCDISALRSVESRLTHVALHDALTGLGNRHQLDICLRHNIARAASRVDDGGFGLLFIDL 424

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IND LG +VGD++LV + RR    L+  D+  R+ G+ F I+L    ++      
Sbjct: 425 DGFKNINDSLGHSVGDEMLVEIARRFRTTLRQNDVAVRMGGDEFLILLDQLRSTEDAMAL 484

Query: 634 AIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
              +   I+ PI     + ++ TASIG A +     ++ E++K A+ AMY AK  G N  
Sbjct: 485 CRKLLALISEPIRTSVGQTVSTTASIGIALFPEHADSADELVKAADTAMYAAKAAGRNRG 544

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F    +    +R+ +++ L  A+   EL L + P+I L D  I+G EAL++W+H   G
Sbjct: 545 AVFSQGLARRALERLQLEQGLRQAIVRGELELQWQPVIDLRDGRIIGAEALLRWNHGDSG 604

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS   F+ +AEE  +I  I  ++LE+  R+   W+ Q   P   + IN+++  L     
Sbjct: 605 RISPERFIPLAEETGLILPIGDWVLEQACRNAADWKAQGLEPG-RLAINVSALQLQQEGY 663

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E +   +S+   SP  ++L  +ES +  + E  ++ L +LR +G+ L LDDFGT  S L
Sbjct: 664 AERVGEALSRHGLSPEMLELELTESSL-QHGEAVQMALHKLRALGVYLALDDFGTGFSSL 722

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L ++P   +K + S +         +AI R+I  MA  +   + A+ +  EI    L 
Sbjct: 723 SMLKFLPLTRLKIDRSFIRDLATDPNDMAIARTIAVMAMTMGLEVTAEGVETEIQRTILL 782

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
            +    +Q       L      +LL  R
Sbjct: 783 GLNVREVQGWLYHPALPVGKFTELLVAR 810



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 8/181 (4%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
               A    L   I        L  I I+     I+  LA     +       R  LA+ 
Sbjct: 91  LTAYAGDDILQRAIEAAPYGYVLKPIQIVELNATIRAALARVEEERKTRRAERRFRLAME 150

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                V ++D  R +      + +IL   S S       +L +I  ++    R  +DS +
Sbjct: 151 AGRFGVMEFDAARRQFELDGFMESILAQPSQSFTVGHDAFLRHIEESE---VRQSIDSLL 207

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              R         R  D +  W+ I        +    R +GI  D++E+ ++ E +   
Sbjct: 208 LAGRMVQVCTAW-RRDDGERIWLEIHASYFPEED----RVVGILRDVSERVQAEEHLRQA 262

Query: 533 A 533
           A
Sbjct: 263 A 263


>gi|293602985|ref|ZP_06685423.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292818605|gb|EFF77648.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 694

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 142/588 (24%), Positives = 264/588 (44%), Gaps = 30/588 (5%)

Query: 381 LIGFT-VIQHVLATGYFSQGIFSDGER--------------QSLAVLGSGDIVWDWD-IV 424
           LIGF  V + V       Q +    E                   V      V   D + 
Sbjct: 111 LIGFAKVTRDVTERREREQQLLRAKELAEHYNSELTSLSSFLDAVVSHIPSCVLVLDAVS 170

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           R+ +          G     M G        +     + F  + +  +       + E +
Sbjct: 171 RNILLANRQAEATFGATRAQMLGKTAQ--QCLPAPVFEFFDRLTNDALRSDGALREAEEK 228

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +  A      +  R     +++      + I++D+T++  +   +   A  D LTG+PNR
Sbjct: 229 LATARG-MRTLRTRSLVFHSNDPRSRYALLISDDVTDENAAHAQVRYMAHHDTLTGMPNR 287

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F ++L   L+  A D      V+ +D+D +K +ND LG   GD++L    RR+ ++L+
Sbjct: 288 RLFREQLLRALNHCADDRRT--AVLCLDLDNFKSVNDTLGHPCGDELLRLFARRLPKVLR 345

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D LARL G+ F ++L +      +   A  +  ++  P  +    + ++ SIG A   
Sbjct: 346 EQDTLARLGGDEFAVVLPNIGQQDDVRKMAERIIDAVRQPFEVEGHTVPMSVSIGIALAE 405

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722
           +   T+  +L+ A++A+Y AK  G N +  F+     +   R  ++ DL  A+   +L L
Sbjct: 406 TPDHTADHLLRYADMALYEAKRNGRNCMAFFKPEMEAAALKRHEVEMDLRQAIMGQQLQL 465

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI+ +    +VG EAL++W HP  G I  S+F+ IAEE  +I  +  F L     + 
Sbjct: 466 YYQPILDVSHVRVVGREALMRWQHPVKGLIMPSDFIPIAEETGLIHELGAFTLHEACHEA 525

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           + W D        + +N+++    ++ L   +++ +S +     R++L  +ESV++ N  
Sbjct: 526 MRWDDHE-----TVAVNLSASQFTNSALVSLVESALSTSGLPARRLELEITESVLLANSA 580

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900
            +   L RL+ +G+ + LDDFGT  S L YL    FD +K + S      S+++ +AI+R
Sbjct: 581 TNLNTLNRLKALGVKVALDDFGTGYSSLGYLRSFDFDKIKIDKSFTQDVESSKEALAIIR 640

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +I  + ++++    A+ +     +  LT+ GC + Q   +  P+  ++
Sbjct: 641 AINGIGRSLDIPTTAEGVETAAQLDRLTQEGCSHFQGYLLGRPVSHDA 688



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++                   G     + G   N+  +    D+              +
Sbjct: 21  AIYMLHPDGTVANWNAGAQRAKGYTQEEIVGK--NFACFYSAEDQAAGLPQRGLATAREQ 78

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE---GILCNA 533
           GR + E      D    W  + I P+ +  GD++ +  +  D+TE+++  +        A
Sbjct: 79  GRFEAEGWRVRKDGTLFWANVVIDPIRDDAGDLIGFAKVTRDVTERREREQQLLRAKELA 138

Query: 534 FQ 535
             
Sbjct: 139 EH 140


>gi|229112762|ref|ZP_04242294.1| Sensory box protein [Bacillus cereus Rock1-15]
 gi|228670596|gb|EEL25908.1| Sensory box protein [Bacillus cereus Rock1-15]
          Length = 735

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   +     LF ++F      
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 66  EFNYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      ++        Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + + +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + + L +  CD+IQ   ++ 
Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKELNLKVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|307153627|ref|YP_003889011.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306983855|gb|ADN15736.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 834

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 125/573 (21%), Positives = 254/573 (44%), Gaps = 13/573 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWL 453
                + ++ ER +  V    + ++  +I   ++      +  +LG     +       +
Sbjct: 270 RLESQLTNNLERYNFLVEQISEGIFLVNIKTKKIIDANLGVCELLGYQYDEIIQLNLYQI 329

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +   DR+   T L          +  E   R  D     +  +I    N       + 
Sbjct: 330 IAL---DRNIIDTELQKISENYPYLID-ESLYRCQDGTLISVKAKIS--RNQYNGQEIFS 383

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DI+E+K++ E +   AF D+LT +PNR+ F  +L   L  +  +  +   V+ +DI
Sbjct: 384 FSVQDISERKRTEEKMQYEAFHDSLTNLPNRKLFYQQLYLTLTNAKKNQTI-FGVIFLDI 442

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+ LG +VGD +L S  +R+    +  D +AR   + F I+L    N  +    
Sbjct: 443 DSFKNINNSLGHSVGDQLLESFAQRLISCTRTGDTVARWGSDDFTILLPRLKNPEENIKI 502

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +  +   +  P  + + ++ V  SIG A +         +LKNA +A+   K +G N  +
Sbjct: 503 SQKILDDLKQPFVIGKHQLQVKVSIGIAIYPQDGEDEETLLKNAAVALTKTKEQGKNSYQ 562

Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +   +SS  +  + ++  +   +E  E  + Y P I+    E+  +EAL++W+ P+ G 
Sbjct: 563 FYTPIMSSEAALLLKLENAIHKGLERREFSVYYQPQIKWSSGEVTAMEALLRWEVPEIGL 622

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I  S+    A +  +I  I  ++L+      ++W++    PP+ I +N+++++  +  L 
Sbjct: 623 IPPSKLFAKASKTDLILQITQWILQTACEQNLAWQEAGL-PPVPIAVNLSAREFQNPYLV 681

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  ++ KT   P  ++L  +E ++  N   +  +      +GI L LDDFG   S + 
Sbjct: 682 ETVARILQKTRLDPHWLELELTEKILRQNLRAAPGIFQDFHNLGIRLALDDFGIGFSSIG 741

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL    F T+K + S +     T +  A++ +++ + +     ++A+ +     ++ L  
Sbjct: 742 YLKQFRFRTLKIHQSFIRDLRGTSQEAALISALVTLGRGFNLRVVAEGVETPSQLELLKT 801

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + C+ +Q   ++ PL  +     L +R   +  
Sbjct: 802 LECEEVQGYLLSRPLRASEATPFLTQRAAQLNR 834


>gi|95930951|ref|ZP_01313680.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132960|gb|EAT14630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 956

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 141/583 (24%), Positives = 260/583 (44%), Gaps = 21/583 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F ++  + A     Q +  + E   + +    D V   D  R           +      
Sbjct: 373 FLIVHDITAQQKARQQLRKEYEFFQMVIDNMVDPVLVMDTSRHIKKANRAAMFLADGKID 432

Query: 444 SMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                     +       D  +    + + +   +        ++  D +     I+  P
Sbjct: 433 ETAEVCCYEAFHRGSLPCDYQSQSCPMHTVLKTGKPASV----IKHLDEKNKTYEIQAAP 488

Query: 502 MSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +  G+IL  I    DIT++        +    I      D+ TG+PNR   +DRL   
Sbjct: 489 YFDDMGNILGVIESFRDITKRLEVENSLVEHERKIYDLTHYDSATGLPNRSVLIDRLNQA 548

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +  +  +++     + + +D++KKIN+ +G  VGD +L  + +R+ +L      LA+ SG
Sbjct: 549 IYRALFNNSSLAL-LSLTLDRFKKINETMGHHVGDCLLQEIAQRLKKLTCDHSSLAKDSG 607

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +++  +     + DFA  +   +        +E+  + SIG A +      ++E+L
Sbjct: 608 SQFFLLIEGDP-KEVVFDFADEVLTEVKQSFFANGQELIPSGSIGIAFYPDHAENATELL 666

Query: 675 KNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
             A++AM  +K     G   V   +        + ++ DL  A+EN++L+L Y P   L 
Sbjct: 667 ARADVAMRLSKDDMGGGAVMVYDPKYGEVAPQSLRMEADLKHALENNQLHLHYQPQFDLK 726

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  +VG+EALI+W+HP  G +S  EF+ +AEE  +I  +  ++L    R    W++    
Sbjct: 727 NAGLVGVEALIRWNHPTEGPVSPGEFIPLAEETGLIHPLGRWVLREACRQAKFWQNNFAR 786

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++S  L  N     ++  +++    P  I+L  +ES VM   E+S  LL  +
Sbjct: 787 I-VPVAVNVSSLQLKKNNFVHVLEECLNEFQIDPQLIELEITESAVMDRLEKSMELLNAI 845

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           + +G +L +DDFGT  S LSYL   PF  +K + S +      E   AI+ +II MA ++
Sbjct: 846 KGLGFNLAIDDFGTGYSSLSYLKKFPFSKLKIDRSFVMDLETDENDAAIITAIISMATSL 905

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               IA+ +        LT  GCD +Q   ++ PL  ++I ++
Sbjct: 906 GLKTIAEGVETVEQKHFLTDHGCDEVQGFLLSRPLSADAIEEM 948


>gi|187927389|ref|YP_001897876.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|187724279|gb|ACD25444.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Ralstonia pickettii 12J]
          Length = 1221

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 137/580 (23%), Positives = 264/580 (45%), Gaps = 13/580 (2%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +I  V      +  I    E  SL +  + + +   D              +LG ++
Sbjct: 646  TLALISDVTYRSALTHTIREQKEFFSLLMGSTVEAICGLDQNGCCTFANAACERLLGYSA 705

Query: 443  GSMHGPI-RNWLPYIHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + G      + + H +            +S        +  E     +D     +   
Sbjct: 706  QELAGKPMHALIHHTHEDGSPYELAACQIQNSIASGAHVHVDNEV-FWRSDGTSLPVEYW 764

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              P+   +G +   I    + +E+++  + +   A  D+LTG+ NR SF+  L T L  +
Sbjct: 765  AYPIV-RDGQVAGSIVTFIETSERRRQQDELRRRATFDDLTGLLNRPSFVTALETRLQQA 823

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               +   P V ++D+D +K+IND LG A GD +L  +  R+ + L     + RL G+ F 
Sbjct: 824  DASER-HPVVAILDLDGFKEINDSLGHATGDQLLRGVAERLTDQLGPHADVGRLGGDEFA 882

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
             ++              A+ +SI  P ++   ++ +  S+G A +  + +    +L++A+
Sbjct: 883  FVVDESYGPPIATRI-EAVMESIRRPFSIAGLDLAINGSVGAARYPGAGLDVDTLLRSAD 941

Query: 679  LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +AMY AK  G     + RV +       +  +L  A++  E  L + P I L      G 
Sbjct: 942  VAMYVAKREGHGFTFTDRVDAGTPRPF-LLSELRRALQEDEFILHFQPTIPLQGLPHFGF 1000

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EALI+W+HP+ G +   EFM + E   +I  +  +++        +  +       F+ +
Sbjct: 1001 EALIRWNHPRLGIVGPGEFMPMVEVSDLIHPLTEWVIASAVSRFKTIIESWPNA--FVAV 1058

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++ ++L++ +    +Q L+ +  +  + +K+  +ES VM +P+R+   L  L  +G+ +
Sbjct: 1059 NVSMRNLINQKFTSSVQYLVEQNRFPVNCLKIEVTESAVMADPDRTLRALNELHGLGVRI 1118

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             +DDFGT  S L+YL  +P D +K + S ++G +      AI+ SII +A ++  ++ A+
Sbjct: 1119 AVDDFGTGYSSLAYLQKLPVDDLKIDRSFVSGLSGSQPSKAIVHSIISLAHSLGLSVTAE 1178

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             I  E D++ L   GCD+ Q  ++  P+ F+++   LK R
Sbjct: 1179 GIESEADMRILRAAGCDFGQGYYIGHPMPFDAVHDWLKSR 1218


>gi|218234510|ref|YP_002370125.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218162467|gb|ACK62459.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 814

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 176/818 (21%), Positives = 335/818 (40%), Gaps = 70/818 (8%)

Query: 202 LAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
           + I L +  +      +    A+ + ++ YI +  GF  K +   S + L   +   I +
Sbjct: 1   MEITLFLSSLSIHDQSIFSYKALPFFIIQYILLFVGFAIKFIKNYSIKGLSQFSFDSIFI 60

Query: 262 SSSLIIFLFMY---LHWNRWHAKVGYITFSGIACIAILFCMS-------FYYPMVTASIA 311
               I F   +   L   R   K  +I        +++            Y     A I 
Sbjct: 61  IIMNIYFTLTFILDLSSFRMLTKDTWILIGYFIAQSLVIYAVISLYRREQYSSSRIALII 120

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
             T+  +  Y   F +  GMK       LI    ++ I    +   + K + ++      
Sbjct: 121 GFTIILVYGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKTKYY 180

Query: 372 VGGLVLIVI-------------------------------------------------LI 382
               V  ++                                                   
Sbjct: 181 RFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTY 240

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                Q        +  +    +R         D V+  ++      +     ++    +
Sbjct: 241 EQLTTQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TA 298

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                   + + +I   D +  +  L      R   L  E R +  +  ++++ I + P 
Sbjct: 299 YYCEVASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPT 356

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ 
Sbjct: 357 F-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNA 415

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N    V+ +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L 
Sbjct: 416 N-DVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLP 474

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +       A  +   +  P  +   E+++T SIG A +       +E++KNA++AMY
Sbjct: 475 EMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMY 534

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G EA
Sbjct: 535 RAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEA 594

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N+
Sbjct: 595 LIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNL 653

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++
Sbjct: 654 SVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISI 713

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +
Sbjct: 714 DDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGV 773

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             E + + L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 774 ETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 811


>gi|114563962|ref|YP_751476.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
 gi|114335255|gb|ABI72637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella frigidimarina NCIMB 400]
          Length = 1020

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 253/562 (45%), Gaps = 12/562 (2%)

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            +     S + +  +      + + P  + I G +   +             + +      
Sbjct: 461  ASVYQNSSEAMSVFTAKGIIIDSNPAFSFITGFSQQDIQDQHLRMFET---DLQPQHFYQ 517

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              S    ++G    E  +R  + + + +++ I  +  +     R++ + +DITE+K++ E
Sbjct: 518  QLSQQLSQQGHWHGEVWMRRKNGENYLILLTINSIIRTKSQGARFVALFSDITEKKQTEE 577

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I   A  D LTG+PNR+  L  L   +  S    N    +M +D+D +K+IND LG  +
Sbjct: 578  LIWRQANYDALTGLPNRRMLLTFLNQEVFHSDRQHN-HFALMFLDLDYFKEINDTLGHDM 636

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +L+    R+   ++  D++ARL G+ F I+L +  ++  +   A  + K ++ P  L
Sbjct: 637  GDVLLIETAERLKNCVRETDVVARLGGDEFTIVLTNLEDTHGVERVAQQILKRLSEPYLL 696

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
             ++   ++ SIG   +     T+  +LKNA+ AMY AK  G N    F   +      R+
Sbjct: 697  GDQTAYISGSIGITLFPDDAKTTEALLKNADQAMYSAKSHGRNRFNYFTSAMQDNAQKRM 756

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + +DL +A+   +  L Y PI+ L  ++I+ +EALI+W+HP  G I  ++F+ IAEE  
Sbjct: 757  SLIQDLKVAIIQQQFELYYQPIVDLSRQQIIKVEALIRWNHPTMGLIPPADFISIAEETG 816

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYS 824
            MI  I  +   +       W+ Q N   I I IN++     D     E     +S     
Sbjct: 817  MIIDIGNWAFYQACEQAAKWKTQFNHH-IQISINMSPVQFKDESTDVENWFKQMSLLALP 875

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             + I +  +ES++          L      G+ L+LDDFGT  S L YL     D +K +
Sbjct: 876  TNSICIEITESLLHDIEPNVEAKLQAYGNAGMQLSLDDFGTGYSSLPYLTKYNVDYLKID 935

Query: 885  GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S +         + +  +II MA  +   +IA+ I  E   + L   GCDY Q    + 
Sbjct: 936  KSFVGRLAAKNNDMCLCEAIIAMAHKLGIKVIAEGIETESQRRLLAFAGCDYGQGYLFSH 995

Query: 943  PLGFNSILK--LLKERFPLVKN 962
             L  +   +  L+++  PL  +
Sbjct: 996  ALCRDDFEQKYLVEKAIPLQAS 1017



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +    E+ +L +  S   VWDWD+  +R++T    A ILG +   ++   + W+ 
Sbjct: 322 QAEQDLLQSNEQLALVLDSSELGVWDWDVQHNRISTNRYSADILGCSMEELNLHPKLWIN 381

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYI 513
            I + D+  F   ++  V  R    + E+++   D    W++   R +  +  G  LR  
Sbjct: 382 AIQLKDKFKFLRSINEIVKGRCISQRVEYQLTNMDGDSRWILQTGRVVDVDDKGKPLRVC 441

Query: 514 GIANDITEQKKSLEGILCNA 533
           G  +DIT+ K+  + +   A
Sbjct: 442 GTHSDITDIKQVEDSLSIAA 461



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 73/255 (28%), Gaps = 14/255 (5%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           +  + F GI  +     M+ Y          + +    L  +  I     +     +  I
Sbjct: 76  LSGLFFGGIPTLVATIIMALYRYH--LGGVAVWVGICALSSSALIGLIWRRYRRHELDQI 133

Query: 342 PAWILIFIWFIGLWMAITKRLDNDI---------IQPALVGGLVLIVILIGFTVIQHVLA 392
                  +  I   + +                 +   ++  L L+ ++IG  + + V  
Sbjct: 134 SYREFYLLGVIVHSLLLLWLFLLPFDQALDALRTVSLPIMMVLPLLTMIIGHLLAKIVFR 193

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                  +  D    +         +      +  +   P +  + G +   +      W
Sbjct: 194 GRDIQVKLQEDF-LFNNQFDIGNIGISITTKTKHWLRVNPYLCRMFGYSENEL--KALTW 250

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
               H +D +    + +  V       + + R  A D    +  + I    +   +    
Sbjct: 251 AELTHPDDLNKDLLLFEKMVKGELNEYEIDKRFIAKDGSVIYTHVTIACRRHVQDNTFLV 310

Query: 513 IGIANDITEQKKSLE 527
           I    DIT QK++ +
Sbjct: 311 IAGFLDITHQKQAEQ 325


>gi|254491592|ref|ZP_05104771.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxidans DMS010]
 gi|224463070|gb|EEF79340.1| hypothetical protein MDMS009_1927 [Methylophaga thiooxydans DMS010]
          Length = 805

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/790 (19%), Positives = 294/790 (37%), Gaps = 58/790 (7%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           +V ++  L+      +  +  I          ++  S ++L   + S   ++   +   +
Sbjct: 7   VVLKNQALLLYQQTPYANIAIIFTVIALYWLFIDHVSADVLKIWSISICLIAVCRLGLWY 66

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
            +L        + +IT      + + F  +      T       +    L+Y        
Sbjct: 67  SHLKNKHLAPAITWITRHVWLTLLMGFAWAGVS---TFYFLIDDVQINTLFYVLVCGVTT 123

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                 +V             + L      +  +D    AL   L + +++    ++   
Sbjct: 124 AGVPVLSVWFPAYIAYTLPQVLALLGVTFYQGYHDPSTQALSYFLFIALLIYYSMLLSLA 183

Query: 391 LATG------------------YFSQGIFSDGER------------------------QS 408
             +                     ++ +    E                          S
Sbjct: 184 RRSYKNVVNELNLRHKNSLLVNELNREVNQREELVQNRTQELLTVNAQLKASQAHMLTLS 243

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            AV  S + +   D         P    I G  +  + G         H N  +    + 
Sbjct: 244 SAVEASPNGILITDAEGIIQYVNPRCEHITGYMAADVIGKTPEVYRSDHHN-NEMIEEMW 302

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            S    +      E + R    + +W+   + P+ N  G I  ++ I  DITE +     
Sbjct: 303 ASIRSGK--EWNGEIQNRRKSGELYWIKEYVAPIRNDEGTITHFVAIQEDITEARVLANK 360

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  DNLTG+ NR  F  RL  ++  +   D++   +  ID+D++K IND  G   G
Sbjct: 361 LSYQATHDNLTGLINRTEFERRLIELVQDARQHDSVH-ALCFIDLDQFKVINDTCGHIAG 419

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINL 647
           D++L  L +R+   ++  D LARL G+ F I++    +  +    A  +R+ I       
Sbjct: 420 DELLRQLGQRLIGQVRKSDTLARLGGDEFAILMRHC-DPGQSEKVATEVREVIELFQFVW 478

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
             R  T+ ASIG +S        +E+LK A+ A Y AK+ G N V  ++           
Sbjct: 479 DSRVFTIGASIGVSSIHRHTTDMTEVLKQADTACYAAKNAGRNRVYIYQDDDKHLVEQQG 538

Query: 707 ---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                 ++ LA+  +   L   PI      +    E L++  + +      S F+  AE 
Sbjct: 539 EFHWVNEIKLALTENRFELFVQPITSAKSGKAEIYEVLLRLRNKQGDLSPPSAFLPSAER 598

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +   ++ ++LE+    +    +Q       I IN++   L ++E+ + +  L  K  +
Sbjct: 599 YNLSDKVDRWVLEKTFDWLEKHINQVPDLR-KIAINLSGASLGNDEMLKLISDLFEKARF 657

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S S+IK   +E+  + N   +   +  L K+G   +LDDFG+  S   YL ++P  ++K 
Sbjct: 658 SASKIKFEITETAAISNLREATRFISELSKLGCEFSLDDFGSGLSSFGYLKHLPVKSIKI 717

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +G  +           +++SI  +   +    IA+ +  E   ++L  +G DY Q  H+ 
Sbjct: 718 DGMFVKDMAHDPLDFEMVKSINDIGHVMGLKTIAEFVENEDVWQKLQSIGIDYGQGYHLG 777

Query: 942 SPLGFNSILK 951
            P+  +SILK
Sbjct: 778 RPVPIDSILK 787


>gi|89901003|ref|YP_523474.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89345740|gb|ABD69943.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
          Length = 499

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 224/453 (49%), Gaps = 9/453 (1%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G +LR + + +D++E+KK  E +   A  D LTG+PNR  F   L+  L  +     L
Sbjct: 46  PDG-VLRIVCV-HDLSERKKFEESLRYQATHDELTGLPNRWLFHLHLSQALVRARRT-GL 102

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  V+ +D+D ++ +ND  G   GD +LV +  RI   L+  D LARL G+ F I+L   
Sbjct: 103 RVAVLFLDLDYFRSVNDSFGHTTGDALLVQVGTRIRSTLRENDTLARLGGDEFAILLADM 162

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            N  +    A  +  S+     L ++++    S+G A +      S  +L+ A++AMY A
Sbjct: 163 KNVDEAVRVASKLLLSLQASYRLQDQDVYSGGSLGLAFYPDDAQDSDTLLRYADMAMYQA 222

Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      +         + + +   L  A+    L L Y P + +    IVG EAL+
Sbjct: 223 KQAGRGGYACYSQEMDLRGHENMRLHTRLKEAMAQGILQLHYQPQVDVESGAIVGAEALL 282

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G++S + F+ +AE   +I  ++ ++LE   + I +W       P+ + +N+++
Sbjct: 283 RWHDPELGHVSPARFIPVAEATGLILPLSDWVLETACQQIAAWTQAG--TPLRVAVNVSA 340

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +      L E ++A +++T      + +  +ESV M  P ++R  L  L  +G  + LDD
Sbjct: 341 QQFRQRNLPEQVRAALARTGAQAQWLDIEITESVAMTQPAQAREQLDALVGLGCRIALDD 400

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P   +K + S M G       +AI R+II +AK++  T++A+ +  
Sbjct: 401 FGTGYSSLAYLKALPVSKLKIDKSFMDGIPQDANDVAISRAIIALAKSLGLTLVAEGVET 460

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +  L + GC+  Q    A  +    +   L
Sbjct: 461 DAQLAFLRQYGCEVYQGWLFAKAMTVQELTSRL 493


>gi|302878223|ref|YP_003846787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581012|gb|ADL55023.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 734

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/628 (22%), Positives = 266/628 (42%), Gaps = 25/628 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
              + A+       +        +     +       + ++++ +G  +  ++       
Sbjct: 119 KWYLGAYSKYLAGLLPELWQQLGKEPEAFVATC-QSLIKIVMLDMGLALDTYMQTDRDTI 177

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            G+    E     +      +   +      +       + GL +G              
Sbjct: 178 LGLKRYAE---DIIASLPAGLIVVNDTLKVRSVNRSFREMFGLKNGEDVSGREL------ 228

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR-YIGIA 516
             D      +           +    R   A     W+ + I  +  +  +     + I 
Sbjct: 229 -EDILPLLNLHQQAQVVLTSGIA--LRGIDAALGEKWLRLTITGIRLAEEEEEEDLLVIV 285

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K     I   AF D+LTG+PNR    DR+  +L  SA   N    ++ ID+D +
Sbjct: 286 EDITKLKAQAVHIEQLAFYDSLTGLPNRSLLRDRVQRVLAHSARHKN-HGAILFIDLDNF 344

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIA 631
           K +ND  G  +GD +L+ + +R+ + ++  D +AR+ G+ F ++L   N        +  
Sbjct: 345 KALNDTKGHNIGDLLLIEVAKRLQDCVRNSDTVARMGGDEFVVVLEELNEDTQQAVAQAQ 404

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D    +  S+  P NL   E   +ASIG + +  ++I   ++ K+A+ AMY AK  G N 
Sbjct: 405 DIGETVLASLNRPFNLQGFEHYSSASIGISLFRDNEIGMDDVFKHADTAMYQAKTSGRNT 464

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F      S      ++ DL  A+   +  L +   +   + + +G EAL++W HPK 
Sbjct: 465 LRFFDPDMQASLEARAVLEIDLRHALSLQQFKLFFQIQMNAAN-QPIGAEALLRWLHPKR 523

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  +F+ +AE+  +I  I  ++LE     I +W        + + +N++++     +
Sbjct: 524 GLVSPLDFISLAEDTGLILPIGQWVLETACTQIKAWEANPLACELQLAVNVSARQFHQPD 583

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E ++A + KT   P+R+KL  +ESVV+ N   + + +  L+++G+  ++DDFGT  S 
Sbjct: 584 FVEQVRAALEKTGADPARLKLELTESVVLNNINDAVIKMSDLKEVGVRFSMDDFGTGYSS 643

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL  +P D +K + S +           I+++II M  ++   +IA+ +  E     L
Sbjct: 644 LSYLTQLPLDQLKIDLSFVYNIGIKPTDAVIVQTIISMGNSLGMEVIAEGVETEAQRDFL 703

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
            R GC   Q    + P+       L++ 
Sbjct: 704 ERNGCHAYQGYLFSKPVSIGEFEGLIRR 731


>gi|172035288|ref|YP_001801789.1| hypothetical protein cce_0372 [Cyanothece sp. ATCC 51142]
 gi|171696742|gb|ACB49723.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 869

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 224/442 (50%), Gaps = 11/442 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +   + D LTG+ NR+S   RL  +   + +  +    V+ ID++++K IND LG   
Sbjct: 429 KTVYQTYHDPLTGLANRRSLEQRLQQLNHQNISQQSELVAVLFIDVNRFKSINDGLGHQA 488

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L ++++R+ + L     L R+ G+ F I L    +   +  FA  +++ ++ P++ 
Sbjct: 489 GDYLLTAMSQRLQQQLNSRKHLGRVGGDEFAIWLKPVKDKQDVVSFAEKLQQVLSQPLSW 548

Query: 648 LEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKH--RGGNHVESFRVSSFRSD 703
             +EI  T ++G + +  +       E+L+ A++AM+ AK        +    + +    
Sbjct: 549 QGQEIYPTVTVGIS-FEETGRNFHGPELLRYADIAMHKAKEFNCSRPQIFEAGMDTQAVQ 607

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R  ++ DL L +E  E  L Y PII L    I G EAL++W+    G +S  +F+ +AEE
Sbjct: 608 RWHLETDLRLGLEQKEFQLYYQPIISLTTGNIAGFEALVRWNSKTRGFVSPGDFIPVAEE 667

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTL 822
             +I  +  ++L    R I +W ++    P + + +N++ +      L + +Q ++    
Sbjct: 668 TGLIVPLGEWILTEACRQIRAWHERFPRNPALIMSVNLSGRQFSQPNLVKQIQTILDVAG 727

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+KL  +ES++M N E +  LL RL+ +G+ L++DDFGT  S LSYL   P DT+K
Sbjct: 728 IEGDRLKLEITESMIMNNVEEAISLLNRLKGLGLRLSIDDFGTGYSSLSYLHRFPVDTLK 787

Query: 883 FNGSLMTGSTEKRIA-----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            + S +    + + +     I+R+II +  N++  +IA+ I  E  +  L  + C Y Q 
Sbjct: 788 VDKSFVGRMEDGKDSHKYIQIVRTIISLGHNLDLDVIAEGIETEGQMNILESLRCKYGQG 847

Query: 938 SHVASPLGFNSILKLLKERFPL 959
              + PL   +   LL E  P+
Sbjct: 848 YLFSRPLSSENAEALLAEDNPI 869


>gi|229153511|ref|ZP_04281689.1| Sensory box protein [Bacillus cereus m1550]
 gi|228630115|gb|EEK86766.1| Sensory box protein [Bacillus cereus m1550]
          Length = 735

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   +     LF ++F      
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 66  EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      ++        Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + + +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + + L +  CD+IQ   ++ 
Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKQLNLKVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|67920838|ref|ZP_00514357.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
 gi|67856955|gb|EAM52195.1| PAS:GGDEF [Crocosphaera watsonii WH 8501]
          Length = 906

 Score =  480 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 134/556 (24%), Positives = 253/556 (45%), Gaps = 14/556 (2%)

Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            E+  +    V  + D++   D            A     A   + G   + +  +    
Sbjct: 356 EEQLRIFECIVATTQDMMALIDQNYTYQIVNDAYARNFQRAKEEIIGK--SVVEIVGEEF 413

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            D  +  LD  +     R +  F +     +  +      P   +N  +   +   +DIT
Sbjct: 414 MDTIQPHLDRCLQGEEVRYETWFDL---GEEQRYYHALYSPYREANKGVTSAVVNIHDIT 470

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+S + +   A  D LT +PNR     RL   +  +    + +  V+ ID+D++K IN
Sbjct: 471 QIKESEQKLYYQAHHDTLTNLPNRMLMNTRLEQSIQQATRKGD-KLAVVFIDLDRFKNIN 529

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L  L +R+ +  +  D +AR+SG+ F +IL    ++         + ++
Sbjct: 530 DSLGHRAGDSLLEQLAQRLCQQRRKSDTVARISGDEFVVILEDIKDTQHAGMVVGKLMRT 589

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  +  R I +T+S+G + +       + +L+NA+ AMY AK  G N    +R    
Sbjct: 590 FEEPFIIEGRTIKMTSSMGLSLFPDDGTDVATLLRNADAAMYRAKEDGRNTYCFYRKEMT 649

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + ++++  L  A++  E YL+Y P I ++    +G+EAL++W HP+ G +S ++F+
Sbjct: 650 STVFEYMLLENALREALKKKEFYLLYQPQIEMLSHRCLGIEALLRWHHPELGVVSPAQFI 709

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I+ I  ++L    R    W +Q       I +N+A+  +   +  + ++ ++
Sbjct: 710 PIAEQSGLIQEIGTWVLTTACRQAKIWLEQKLDFG-RIAVNVAAPQIQHGDFIQVVENVL 768

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    + ++L  +E ++M   E++   L +L+ +GI LT+DDFG   S L+YL  +P 
Sbjct: 769 KTTGLPAAYLELELTEGLLMKQTEQNIKQLEKLQGMGIKLTIDDFGIGYSSLNYLKRLPI 828

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +          AI +++I +   +   IIA+ +  E     L   GC   Q
Sbjct: 829 DKLKIDQSFIRDLPHDTNDTAISQAVIALGYALNLQIIAEGVENEEQAAFLKEKGCHQAQ 888

Query: 937 DSHVASPLGFNSILKL 952
               + P+    +  L
Sbjct: 889 GYFFSQPIPPQQVSAL 904



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 2/146 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +  VLA  + +Q   +  E   + A+  S    W++D+V ++V  + ++  I G+  G
Sbjct: 82  AQLSQVLAELHSTQATLNSRENHYAQALKFSQTGSWEFDVVTEKVFWSEEVERIWGMEPG 141

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +  G ++     IH  D ++++  +      +    + E+R+   D   HW+        
Sbjct: 142 TFRGELQQVQGAIHPEDVEHWQKNVQDCRE-KGKEHRIEYRIIHPDASIHWVQALGSAEK 200

Query: 504 NSNGDILRYIGIANDITEQKKSLEGI 529
           +  G+++R +GI  DITE+K+     
Sbjct: 201 DDQGNVIRLLGIVMDITERKQLELEH 226



 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 4/162 (2%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
              V  L+ IV+ I     Q  L        +             +  +VW  D      
Sbjct: 203 QGNVIRLLGIVMDIT-ERKQLELEHKETEMALRESEALFRNMADHAPVMVWVTDETGYST 261

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +       G   G+  G    WL  IH ++R+  R         +R     ++R R  
Sbjct: 262 YVSQSWYDFSGQKEGTALG--FGWLDVIHPDERELARKRFLE-FNEKRQPFSIDYRFRRR 318

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           D  + W I   +P  +++G    YIG   DI+++K+  E + 
Sbjct: 319 DGVYCWGIDAGKPRFSADGQFKGYIGSVMDISDRKRMEEQLR 360


>gi|28867636|ref|NP_790255.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213967820|ref|ZP_03395967.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301382457|ref|ZP_07230875.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302061151|ref|ZP_07252692.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302132056|ref|ZP_07258046.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28850871|gb|AAO53950.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927596|gb|EEB61144.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 897

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 269/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGNK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTSSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +          A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILKEEQLDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ L  R+P   + 
Sbjct: 868 DVGQGYLFDRPIPGEELIEKLT-RYPRRPSA 897


>gi|124515987|gb|EAY57496.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 878

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/618 (20%), Positives = 264/618 (42%), Gaps = 14/618 (2%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
                     +   + +   ++  +          +   T I   ++          D  
Sbjct: 266 FGVASASAFPIRKGEEIVALLVILSNRPNFFETESIGLLTRIAEAMSYALDDFERGQDLF 325

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-- 463
             SL      + ++  DI             + G +   + G   + L        +   
Sbjct: 326 LTSLVFDAVPEGIFITDIDGRITRVNEAFCRLSGFSLDELLGRDADTLT----AGLEKGI 381

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +  R G ++  F +   D   + +   I  +     D    + +  D+T + 
Sbjct: 382 LCASIRDAIDQR-GTVEGIFELIRKDASSYMVEATITLVEEPGRDSRHVVLLLKDVTAKM 440

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I   A  D+LTG+ NR + ++RL   ++ S  +      +  +D D +K IND L
Sbjct: 441 ERERQIWRLANIDDLTGLLNRTALIERLANEMEKSRRNRGA-MALFFLDFDDFKGINDTL 499

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD  L  +  R+   ++  DI+ARL G+ F I++  E++   I  FA  +   +  
Sbjct: 500 GHSAGDFFLKVIGHRLSGSVRPTDIVARLGGDEFVIVVALESD-ESILAFAQKILDILGA 558

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+++  + +  + S+G A++     +  ++L+ A++AMY AK++G N  + F        
Sbjct: 559 PVSIQAQTVQTSVSVGIATFPRDAESVEDLLRKADIAMYQAKNKGKNTWQFFNGEMEERI 618

Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R+  +++  L   ++    +L + P I +    +VG+EAL +W  P  G I  + F+ +A
Sbjct: 619 RLRFEQEQMLKTGLQEGAFFLHFQPQIDVFRRRLVGVEALARWPVPAGGTIGPASFIPLA 678

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I A   ++++   R I  W      P I + +N++S+          ++ ++S+ 
Sbjct: 679 EETGTILAFGEWVIQEAFRVIQFWSAS-GRPRIRVGVNVSSRQFWSPTFWTFLREILSRH 737

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +    +E+V+M +PE +   L  L+++GI + +DDFGT  S LSYL   P D +
Sbjct: 738 AELTRWLTFELTETVLMRDPETAGDQLSWLKELGIRIAIDDFGTGYSSLSYLSRFPVDEI 797

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +     + + + ++++II M K++   ++ +    E +++ L  +GC  IQ   
Sbjct: 798 KVSQEFVMRMAKSPRDLKLVKTIIQMGKSLRLNLVGEGAETEEEVRMLEGLGCHVIQGFA 857

Query: 940 VASPLGFNSILKLLKERF 957
           ++ PL    +     +  
Sbjct: 858 LSRPLPQPEMESFWNQYL 875



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +G  + D +     V        +LG     +   + +     H  D       +     
Sbjct: 34  AGIGIVDAET-GRYVFVNARWCKMLGYDPQEL--SLLSIRDVTHPEDWPKTEACIREAQE 90

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             R     E R    D    W  + +R   +         GI  D  ++K+
Sbjct: 91  GLRETYFVEKRFLRKDKTVFWGFLLVRSFRDPATGNRLLNGIILDFDDKKR 141


>gi|71733928|ref|YP_276900.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257482970|ref|ZP_05637011.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|71554481|gb|AAZ33692.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320326351|gb|EFW82404.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320331657|gb|EFW87595.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330891357|gb|EGH24018.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330985928|gb|EGH84031.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331011788|gb|EGH91844.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 897

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L         D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897


>gi|297583861|ref|YP_003699641.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297142318|gb|ADH99075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 778

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 161/787 (20%), Positives = 319/787 (40%), Gaps = 42/787 (5%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
                 +     ++GV  +  +   I   V  S  +     + + +L  +   F      
Sbjct: 17  MKERLLSRIFLSVLGVGFIFTVVNFINEWVLGSVQMTYAVILFYSIL-LVMHAF------ 69

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
                            A +   I+F    +    +      + F   A    +  +S  
Sbjct: 70  --------RRRIHFEIRAYTIIFILFGTGIVSGLTYGMVGSSMLFYVGAAYVAMLLLSKR 121

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL--LIPAWILIFIWFIGLWMAITK 360
             +   ++       I +++   I+ +     + AV    + + ++ FI+F+GL +    
Sbjct: 122 ETIYWMAMTLFIYLVIYVFWVSGILTYEFSVMDYAVSETTLISRMVAFIFFVGLLIFSQW 181

Query: 361 RLDNDIIQPALVGGLVLIVILIGF-TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            ++  ++            + +    +I+         + I    E+    V  + D+++
Sbjct: 182 MVNEFLVDKMNDLKQTHDELRLSDKQLIEQYNEILDNREEIKLKEEQYRSIVENTEDLIY 241

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYR 475
                R  +T     +  + +    + G   +        I  NDR      LD  +  +
Sbjct: 242 AVTPERTLITANSSFSAFVKMEQSELIGTSLDKLKGLATLIDENDR-----NLDHVLAMK 296

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              +Q+  R+     +  +    I P+ +++G +   +   +D+TE     E I   A+ 
Sbjct: 297 -EPIQFVQRIEKPSGRQIY-HTDITPVMHADGSLTMMLIKHHDVTELVHKDEQIEQLAYF 354

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR  F      I+     D   +  ++  D+D +KKIND +G   GD +L  +
Sbjct: 355 DQLTGLVNRYHF----EAIISEKIKDIGHQFGIIYFDLDHFKKINDTIGHFAGDYLLKQV 410

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKI----ADFAIAMRKSIAMPINLLERE 651
              +  +L     LARL G+ F ++L   +    +     + A  + K+   P+N+    
Sbjct: 411 AETLQGVLPDDATLARLGGDEFAVVLDETSEGHALMRLLEEVADTIVKTARKPVNIDGVH 470

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
             ++AS G   +     +  E++KN + AMY AK+ G N    F             ++ 
Sbjct: 471 YYISASAGIVVYPEHGRSHDELMKNVDTAMYKAKNDGKNKCIFFNAEIKDETDQSILLEA 530

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A E  E+Y+ Y P++   +E + G EAL++W+   +G +S + F+ + E+  MI  
Sbjct: 531 HLRHAFEYDEMYVDYQPLVSGKNEHVRGFEALMRWNSNYFGPVSPAVFIPVLEQTGMIVE 590

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
              ++L+     I    ++ +     + +N++   L        ++ ++ +   +P+ ++
Sbjct: 591 FGEWILKEALNKIHEL-EKVSDQSYVVSVNVSLLQLKQERFATNVKRIMDEWGVNPASVE 649

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++  + E    +L  L++ GI + LDDFGT  S LSYL   P DT+K + S   
Sbjct: 650 LEITESILADDVELIINVLSELKQYGIRIALDDFGTGYSSLSYLRKFPLDTLKIDKSFSE 709

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G  +++    ++ SII MA  I   ++A+ I     +  L R  CDY Q  +   PL   
Sbjct: 710 GIGQQQKQLELIGSIIQMAHKIGLEVVAEGIEEPEQVAYLKRHHCDYFQGYYFHKPLNDK 769

Query: 948 SILKLLK 954
            +LK++K
Sbjct: 770 DLLKVVK 776


>gi|146281508|ref|YP_001171661.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas stutzeri A1501]
 gi|145569713|gb|ABP78819.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas stutzeri A1501]
 gi|327479685|gb|AEA82995.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas stutzeri DSM 4166]
          Length = 707

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 251/569 (44%), Gaps = 11/569 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           +       +Q + S     +  +  + + +             P IA +L      + G 
Sbjct: 136 NRRDLQLLTQQLDSARAFNASVLSNAAEGILVVAEDGYISFANPAIAGMLHTRVEDLQGT 195

Query: 449 IRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                        D++       +         +E ++  A+     + +   P+     
Sbjct: 196 PL-LSHLAAPEMPDSWHESDFYRYWRSGSTYRLHEAQLHTANGTPLPVALSSSPLPRQQ- 253

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                + IA D++  +     +   A  D+LTG+ NR+ F   L + L     +   R  
Sbjct: 254 --RSMVVIALDMSVVRNLHTQLETQAVTDSLTGLLNRRGFHQALESSLARVDRNGK-RMA 310

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D +K+IND LG   GD++L  + R +   ++  DI+AR+ G+ F  +L S ++ 
Sbjct: 311 ILYIDLDGFKRINDSLGHDAGDEILCKVARLLETCMRPYDIIARMGGDEFTALLDSLDHP 370

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              A  A  + + I++   +   E+T+ ASIG A +    ++  ++L++A++AMY AK  
Sbjct: 371 EDAARVAEKLIELISVRHKIDGTEVTLGASIGIAHFPDCGVSVDQLLRSADMAMYEAKRA 430

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F   ++     R+M++E+L  A E ++  L++ P + L   ++ G E L++W 
Sbjct: 431 GRRQYRFFSSDMNERAHARLMMEENLRSATERNDFELLFQPQVMLASGKLRGFEGLLRWP 490

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
               G      F+ + EE  +I+ +  ++L         W        + + +N++    
Sbjct: 491 QGDAGENQPGNFIPLLEETRLIERVGEWVLREGMDQYCRWLPAFG-SDLILSLNVSPVQF 549

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L + ++ L+ +   +P++++L  +E  +M + E+S   L +LRK+G+ + +DDFGT
Sbjct: 550 SRAGLFDVLRRLLDEYQLNPAQLELEVTEGTLMQDLEQSCEKLRQLRKLGVRVAIDDFGT 609

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL +   DT+K +   +     + +  A++ +II + +N+   ++A+ +     
Sbjct: 610 GYSSLAYLRHFELDTLKIDRLFIANMLDSPRDAAVVSTIIDLGRNLGLEVVAEGVETLAQ 669

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
              L   GCD +Q   V+  +        
Sbjct: 670 RDWLLHNGCDVMQGFLVSPAVTAEQARAF 698


>gi|116686645|ref|YP_839892.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|116652360|gb|ABK12999.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
          Length = 693

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/658 (23%), Positives = 287/658 (43%), Gaps = 17/658 (2%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
            + ++ +  A +    + S+              GY+ A+ L+   I I      LW+  
Sbjct: 39  AARWWLVGGACVMGTGIWSMHFVGMLAFALPIPLGYDPAITLLSLLIAIVCSTCALWLVC 98

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              L    +    +     +  +    +    ++ G     +       ++AV+ SG ++
Sbjct: 99  RDTLKWRRLCGGAMLMGAGVAGMHYTGMASMRMSPGIQYDPLLVCLS-VAIAVVASGAVL 157

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W   I R           +L L S  + G     +  +H       R  L S  G    R
Sbjct: 158 WIVFIRR----ANSSRVRLLNLGSAVLMGAA---IAGMHYTGMAAARFPLGSLCGAAGSR 210

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +   +           ++     +S  +  +     +    T   ++ + +   A  DNL
Sbjct: 211 MDAGWLALVIIVATLAILAIALIVSILDLRLEARTAVLA--TSLAEANQELTYLALHDNL 268

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR    DR+   +  +  +      +M +D+D +K +ND  G  VGD +LV + RR
Sbjct: 269 TKLPNRVLLEDRIDQAIQAADREHG-SFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARR 327

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           IG  L+  D +ARL G+ F  + ++ +     AD A  +   I  P  + E E+ V+ASI
Sbjct: 328 IGANLRSQDTIARLGGDEFV-LAVAVDEPADAADVADKILAVIRKPFRVSEHELRVSASI 386

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716
           G A +  +     +++ NA+ AMYHAK  G N    F  S   +  + + I ++L LA+E
Sbjct: 387 GIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALE 446

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L Y P   +    I+G+EAL++W HP  G IS  +F+ IAE+  +I  I  ++L+
Sbjct: 447 RRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLD 506

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  W D        + +N++        L   ++A + +    P  + L  +ES 
Sbjct: 507 EACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITEST 565

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            M + + S  +L +L  +G+ +++DDFGT  S L YL  +P   +K +   +       +
Sbjct: 566 AMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFIRDLEHDTE 625

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             AI+ +I+ + + ++  I+A+ +      + LTR+GC+ +Q   +  P+  +  +++
Sbjct: 626 DAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQGFLLGRPMPADHFVEM 683


>gi|87199442|ref|YP_496699.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135123|gb|ABD25865.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 724

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 127/556 (22%), Positives = 236/556 (42%), Gaps = 23/556 (4%)

Query: 410 AVLGSG-DIVWDWDIVRDRVTTTPDIAT----ILGLASGSMHGPIRNWLPYIHINDRDNF 464
           A   +G   +W  D        +    T    ++G    ++    R+        +    
Sbjct: 50  AFEQAGFGWLWATDAEGRLTYVSLSAHTKAAGMIGRPIATLIETDRDG-----PGESAGR 104

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                     R   L   F     D    W  +  +P  + +G    Y G A D+T++  
Sbjct: 105 PLSFQLSKRGRINDLVVRFSGDERDG--RWWSLSGQPSVSPDGSFAGYRGFARDVTQEYT 162

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   A  D+LTG+ NR     RL  IL  +    N    +M++D+DK+K +ND +G
Sbjct: 163 RKREDSRAAEFDSLTGLYNRHRMTRRLDAILA-AFRQANRCCGLMMLDLDKFKHVNDTMG 221

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD++L  +  R+ +++     + RL G+ F IIL   ++  ++ + A  + + ++ P
Sbjct: 222 HPAGDELLRQVAERLRKVVGERGEIGRLGGDEFQIILPDIDDRGRLGELAAKVIQIVSQP 281

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +  +   +  S+G A           ++ +A+LA+Y AKH G      F        +
Sbjct: 282 YAIEGKRAVIGTSVGIAVAPHDGEDREGLVSSADLALYAAKHGGRGQFRFFSTELKDEAQ 341

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               + +DL  A+   EL L Y P++R+ D  +VG EAL++W+H + G I  S F+ IAE
Sbjct: 342 ERTILNQDLREALARDELELHYQPVVRIEDNIVVGFEALMRWNHTERGPIPPSLFIPIAE 401

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  + L +   D  +W D      + + +N++            +   ++++ 
Sbjct: 402 ESNLIVPLGEWALRKACEDAAAWPDS-----VRVAVNVSPVQFGVAGFVTSVATAVAQSG 456

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R++L  +E+V M + E        L+ +G+ L LDDFGT  S LSYL   PFD +K
Sbjct: 457 IDPERLELELTETVFMRDSEAVEETFSALKALGVRLALDDFGTGYSSLSYLRSAPFDKLK 516

Query: 883 FNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            + S +       +    I+ +++ +A  +      + +     ++ +   G   +Q   
Sbjct: 517 VDRSFVETCAAKDQNSAKIISAVLGLADALGMETTVEGVEAFDQLEVVRERGAKLVQGHI 576

Query: 940 VASPLGFNSILKLLKE 955
            A  +    + + L +
Sbjct: 577 FAHAMPHAEVAERLAD 592


>gi|228942495|ref|ZP_04105031.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975429|ref|ZP_04135984.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982062|ref|ZP_04142354.1| Sensory box protein [Bacillus thuringiensis Bt407]
 gi|228777600|gb|EEM25875.1| Sensory box protein [Bacillus thuringiensis Bt407]
 gi|228784223|gb|EEM32247.1| Sensory box protein [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817178|gb|EEM63267.1| Sensory box protein [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 735

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 166/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   I     LF ++F      
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILIYGYIHLFQLNFGMKTSA 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 66  EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      ++        Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + + +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQHSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  D++AR  G+ F I+L    +       A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLISTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+IQ   ++ 
Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDHIQGFFISK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|182438510|ref|YP_001826229.1| hypothetical protein SGR_4717 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467026|dbj|BAG21546.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 611

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 141/584 (24%), Positives = 271/584 (46%), Gaps = 29/584 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           I S+      A   +   +   D     V     +  +LG A+  + G   + L  +  +
Sbjct: 26  IASELRDHRAAFNAATLPMGVVDGRGHVVRANEALGGLLGTAAAVLAGRRASELLDLASD 85

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIAND 518
           DR          +  RR R +   R++  D +  W  I + PM+ +   +  R +    D
Sbjct: 86  DRT--WHAYREVLLGRRSRFRCTRRLKHPDGRSLWAEITVVPMTGASAAEPARVLLTVAD 143

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-------TDDNLRPTVMVI 571
           ++++++  E +      D +T +PNR  F +RL + L+             + R  +  +
Sbjct: 144 VSDRRELQERLRHLQMHDPVTRLPNRTLFFERLASALETPPYQDDSMPPRQHARIGLCYL 203

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--------ILARLSGNRFGIILIS 623
           D+D +K IND LG   GD +L ++  R+ +  +           ++ARL G+ F I++  
Sbjct: 204 DLDGFKAINDTLGHRTGDRLLAAVAARLTDCAENDASRRPGGSRLVARLGGDEFAILVED 263

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              + ++A+ A ++  ++  P +L  + ++V+ASIG    T++  + + +++ A+  +Y 
Sbjct: 264 SAGTEELAELARSVLAALQQPFDLAGQRLSVSASIGVVERTAAGTSPTGLMQAADTTLYW 323

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F             +   L  AVE  E  L Y P++ + D  + G+EAL
Sbjct: 324 AKADGKARWTLFDPERNAHRMTRQSLSSTLRPAVERGEFTLEYQPLVGMADGVLRGVEAL 383

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINI 800
           ++W+HP++G +  + F+ IAEE   I  +  ++L    R    W  D  + PP+FI +N+
Sbjct: 384 VRWNHPQFGVLPPNRFVQIAEEDGSIVQLGRWILRTACRQARRWELDHPDEPPLFISVNV 443

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A + + D++L   +  ++++T  +P  ++L  +ES VMG+  R    L  L  +G+ + +
Sbjct: 444 AVRQVWDSDLVADVAQILAETGLAPGLLQLELTESAVMGSGGRPLRALQALSDMGVRIAI 503

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--------STEKRIAILRSIIPMAKNIETT 912
           DDFGT  S L+YL  +P   +K +G+ + G         +     I+ +++ +A  +  T
Sbjct: 504 DDFGTGYSNLAYLSRLPVSVLKLDGAFVKGFRYEDGTHPSPADETIVEAMVQLAHRLGLT 563

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + A+ +      + L R+GCD  Q    +  +    I  L+  R
Sbjct: 564 VTAECVETAGQAERLRRIGCDTGQGWLYSRAVAPEQIAGLIGSR 607


>gi|297583053|ref|YP_003698833.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297141510|gb|ADH98267.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 801

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 127/561 (22%), Positives = 249/561 (44%), Gaps = 11/561 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            + + +  +  +  +  +G+ V   +            +TI       + G   R     
Sbjct: 249 EKELEAHNQMLASVLENTGEGVVITNANSQIEWINQAFSTITEYTEQELIGKNPRLLKSG 308

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H      F   +   +    G+   E   R  +   +   ++I  + +  G+  RY+GI
Sbjct: 309 QH---NAAFYHSMWHDLTTY-GKWTGEIWNRRKNGDVYPEWLKIFALKDEEGEPYRYVGI 364

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D++E +   E I     QD LTG+ NR   +  L   L  +   +    T++  DID 
Sbjct: 365 VTDMSEVRAREERIDSLINQDKLTGLYNRYYVMRELEQDLIAAERYNQT-ATILFGDIDA 423

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IN+ LG A GD++L  +   + E+     ++ARLS + F I+     +  ++ +   
Sbjct: 424 FKSINENLGHAAGDELLRQMADLLQEVFAK-ALVARLSSDEFAIVFPRGTDDFEVRERLG 482

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
                +  P  L   +  +T S G A +  +     +++ NA++AM+HAK R GN  + +
Sbjct: 483 LFFNELKKPFTLHNEDFYITCSFGVARYPDNGRERDDLMLNADIAMHHAKKREGNTFDYY 542

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +       +K  +  A++ +  +L Y P + + D  IVG E L++ D P+ G +S
Sbjct: 543 TDVLGNQVKREFKVKTVIQRALDENLFHLHYQPTLSVQDGVIVGAEVLLRLDDPEEGRVS 602

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE+   I +I  ++L    ++     D      +F+ +N++ + L +    E 
Sbjct: 603 PGEFIPVAEKFGFIYSIGDWVLRNACKE-ALGTDAYRDGNLFLAVNVSVQQLENEAFPEQ 661

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + A++ +T +   R+    +E   + + +     L  L ++GI + +DDFGT  S L  +
Sbjct: 662 VDAILEETGFPAERLVFEVTEETSISDSDLVSGTLNALIEMGIQVAIDDFGTGYSSLGKI 721

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             +    +K + S +    EK   I+ +II M K++   ++A+ +  E  +  L   GCD
Sbjct: 722 HQLNMHQLKIDQSFIRDI-EKTTDIVHAIIAMGKSLRLNVVAEGVETEEQLAFLKEAGCD 780

Query: 934 YIQDSHVASPLGFNSILKLLK 954
           + Q  ++  P+ F    +L++
Sbjct: 781 FAQGFYLHRPMPFADYRQLIE 801



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 6/128 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-NDRDNFR 465
                  S   +   +              + G     + G    +   I+  +D  + +
Sbjct: 138 FKALFNQSPYAIAILNRDYRISEVNGHFEALFGYGREEVLGLSPEF--VIYPLDDESSMQ 195

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D     R   L  +   +  D     + +   P+   +  ++  + I  D T +K+ 
Sbjct: 196 DHIDQM--ERGVILTRDTLRKHKDGHLINVELIALPVYIES-HLIATLAIYVDQTREKEL 252

Query: 526 LEGILCNA 533
                  A
Sbjct: 253 EAHNQMLA 260



 Score = 39.2 bits (90), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 8/131 (6%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIR 450
           A    S+      E            V   +     +        +    +   +   + 
Sbjct: 7   ARQSPSETGRDYRELYQELFEHHHLPVLIIEPETGLIRDVNQKAVSFYQYSKDELMNMVI 66

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           + +  +  +     +  + +            FR R  D +   + +   P+ + NG  L
Sbjct: 67  SDINILDPD---TIKAKMYAAKKNNTNSFH--FRHRLKDGEIRDVKVDSIPV-DFNGTHL 120

Query: 511 RYIGIANDITE 521
            Y  +  DITE
Sbjct: 121 LY-SLITDITE 130


>gi|172036313|ref|YP_001802814.1| hypothetical protein cce_1398 [Cyanothece sp. ATCC 51142]
 gi|171697767|gb|ACB50748.1| hypothetical protein cce_1398 [Cyanothece sp. ATCC 51142]
          Length = 967

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 149/695 (21%), Positives = 294/695 (42%), Gaps = 40/695 (5%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI---------PAWILIFIW 350
           +    + TA+  RI L   V+      ++  +   +  V  +          A   +   
Sbjct: 275 ARLGLIQTANYTRIGLLITVITALALTLWVSLWLGKTIVQPLTQLTDVSEHIAKGSLEET 334

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                      +   + +  +     L  +          L     S  I     R S A
Sbjct: 335 LNFSASNEFGIVATALNKMLIQLRETLADLEDRVRERTQALEAKTESLEITLKKLRFSQA 394

Query: 411 -----VLGSGDIVWDWDIVRDRVTTTPDIATILGLA---------SGSMHGPIRNWLPYI 456
                +      V  +D   + +      + +L ++           +    +      +
Sbjct: 395 NYHQLINNLQAGVIIYDPRGNMMMANLAASELLDISSESLSLYSSPEARVTFVDESGATL 454

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYE---FRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              +           +  +     Y     R R  D    W ++   P  +    + + +
Sbjct: 455 PPQEHP-----CQQVLTTQVPLHNYVMGIHRQRPLD--SIWTLVNAFPAFDDQNHLTQVV 507

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DIT++K + E +   A  D LTG+PNR    +RL   +       +    V+ ID+
Sbjct: 508 VLLLDITDRKLAEEQLRYRALHDALTGLPNRTLLTERLDHAIQRVKRYPDSLFAVLFIDL 567

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND LG  VGD +L+ +   +   ++  D +ARL G+ F I+L +  +  ++   
Sbjct: 568 DRFKVINDSLGHLVGDQLLIYIANTLKRHVRSSDTVARLGGDEFVILLENLTSPHEVVQV 627

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + K I  PI L+ + +  +ASIG A  +    T  ++L++A+ AMY AK       E
Sbjct: 628 IERIEKDIKKPIQLMNKTLFTSASIGIALSSPEYGTGEDILRDADNAMYRAKGNNLTSYE 687

Query: 694 SFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F V   ++      ++  L  A+E  +  L Y PI+     E++G EAL++W HP+ G 
Sbjct: 688 LFNVEMRQTMLEVFELETSLRQALEQQQFILHYQPIVSATSLELLGFEALVRWVHPEKGL 747

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNEL 810
           IS  +F+ +AEE  +I  ++ ++ +     +  W     M   + + INIA+      + 
Sbjct: 748 ISPGKFIPLAEETGLIIPLSEWIFQEACSQMAQWCADFRMASSLKMSINIAAYHFQSPQF 807

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E +  ++++T      +KL  +ES+++ N +R   L+ +L++  I ++LDDFGT  S L
Sbjct: 808 LEKIDQILTETQLLGKNLKLEITESLLIKNTDRFLSLVPQLQQRQIEISLDDFGTGYSSL 867

Query: 871 SYLGYIPFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           +YL   P +T+K + S + G      +  ++I+ +II +A+++   ++A+ +  +   ++
Sbjct: 868 NYLKRFPINTLKIDKSFVDGLDYQKNQADVSIIEAIIHIAQSLGMDVVAEGVETDRQRQQ 927

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           L ++GC+ IQ   ++ PL      + +  +  +  
Sbjct: 928 LQQLGCEAIQGYLMSPPLTSEKAREFINRQLSVTS 962


>gi|289624674|ref|ZP_06457628.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330871114|gb|EGH05823.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 897

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L         D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897


>gi|168184847|ref|ZP_02619511.1| putative diguanylate cyclase [Clostridium botulinum Bf]
 gi|237793677|ref|YP_002861229.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657]
 gi|182672126|gb|EDT84087.1| putative diguanylate cyclase [Clostridium botulinum Bf]
 gi|229261773|gb|ACQ52806.1| putative diguanylate cyclase [Clostridium botulinum Ba4 str. 657]
          Length = 892

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 236/452 (52%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   +   A   N +  
Sbjct: 447 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTISNYA---NEKFA 503

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 562

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 563 SDAEKLACKICTTLNHSIKYKEDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 622

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E  EL + + PI  L   +I+ +E+L++W 
Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKHELLVYFQPIYHLKTSKIIAMESLVRWK 682

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 I+ ++F+ +A+ +  I  I+ ++L +       W+ Q    P+++ +NI+ K +
Sbjct: 683 F-DNKIINPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKPLYVSVNISFKQM 740

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 741 KDKNFVDNVLNILKTTKLDPSYLCLEITEDEAMEDVDLSIKTLEALKRHGIKISLDDFGT 800

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIEQ 860

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  + CD+IQ  +++ PL   +   K ++
Sbjct: 861 LEILQELDCDFIQGFYISEPLPIKTFESKFIR 892


>gi|88704969|ref|ZP_01102681.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88700664|gb|EAQ97771.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 943

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 135/561 (24%), Positives = 255/561 (45%), Gaps = 11/561 (1%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               +   R +     S + V   ++    +        I G A     G        I 
Sbjct: 371 HEAEAKLRRVAEVFSSSAEAVMMTELDGSIIDVNNAFTEITGYARNEAIGETP---EIIS 427

Query: 458 INDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            +     F   +   +  + GR Q E   R  +      ++ +  + +    +  Y+   
Sbjct: 428 SDQHSPQFFQEMFRIIDAQ-GRWQGEVWNRRKNGDHFPCLLTVSAVRDEKSRVTGYVASF 486

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT  K++   +   A QD LTG+PNR      L + L  +A   N   T++ ID+D++
Sbjct: 487 SDITTIKQNEHRLELLARQDPLTGLPNRTHLRHTLDSRLARAAP-GNRSTTILFIDLDQF 545

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND LG + GD++L   + R+ + L+  DILAR+ G+ F  +L        ++  A  
Sbjct: 546 KDVNDSLGHSAGDELLKVCSSRLLDSLRDDDILARVGGDEFVALLFDVPGYENVSTIASK 605

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  PI +    + V+ASIG   +      +  +L+NA+ AMY AK  G    E + 
Sbjct: 606 LIAVLEEPIAIGGETVRVSASIGICRYPEDGADTETLLRNADTAMYAAKKAGRGTWECYS 665

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +     +  +++      A+  ++L +VY P        + G EAL +W  P +GN+S 
Sbjct: 666 QAMTDVATRHLLLSGAFREALTANDLEIVYQPKYDADSLALTGFEALSRWTSPDFGNVSP 725

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ IAE   +I  ++  +L  +   +  WR    +PP  I +N++ + L   +  + +
Sbjct: 726 EEFIAIAENNGLIVELDYKVLGGVCAQLSRWRAARLLPP-KIAVNVSGRTLQQADFYQRL 784

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++     S   ++L  +E+ ++  PE+   +L ++R +G+++++DDFGT  S LSYL 
Sbjct: 785 RDILEHHDVSGESLELELTETALLPQPEKQAGVLDQIRALGLTISIDDFGTGYSSLSYLQ 844

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P  T+K + S +     ++   AI  +II MA+ ++  I+A+ +  E   + L   G 
Sbjct: 845 RLPVATLKIDASFVRELSVSKDADAIAEAIIAMARALDMGIVAEGVESEQQARFLRERGP 904

Query: 933 DYIQDSHVASPLGFNSILKLL 953
             +Q    +  +   +   +L
Sbjct: 905 MSVQGFLYSKAVSAQAATDML 925


>gi|262278362|ref|ZP_06056147.1| sensory box protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258713|gb|EEY77446.1| sensory box protein [Acinetobacter calcoaceticus RUH2202]
          Length = 950

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 130/581 (22%), Positives = 268/581 (46%), Gaps = 11/581 (1%)

Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           Q  L     ++ I  +    E   L    +  + + ++  D   + +   P    + G +
Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDINPYYEKLTGFS 432

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       +       +  F + +   +    G    +F  + +  +  ++ + I  
Sbjct: 433 KSELLNKELFSITINQKELQQQFHSSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +    I  YIG A D++EQK+  + +      D+LT +PNR  + ++L   L   + +
Sbjct: 492 VKDEFNQITNYIGFARDLSEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ++ID+++  N+ L    GD++L    +R+  +     ++A L+G+ F II 
Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNGDDFAIIY 610

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   I  +   + +++  P  +  +E  +TASIG A +         +  +AE A+
Sbjct: 611 EISPIHPNIEQYCQNILQALNAPFYIDNQEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670

Query: 682 YHAKHRGGNHVESFRVSS-FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  GGN +  +   +        ++++L  A++N+E  + Y P I L D+ I+G EA
Sbjct: 671 SEAKRLGGNTISYYCNQTTHSYKSADLEQELRKAIQNNEFVVYYQPKINLQDQSIIGFEA 730

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+ Q     I + +NI
Sbjct: 731 LIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKSQ-GYTNIQVSVNI 789

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++ +    L   +  ++ K     S ++L  +ES ++ N +  + LL  +++  IS+ L
Sbjct: 790 VAQQIHRGLLLNDIDEILQKYNIQGSDLELEITESALLDNTDNVKTLLHAIKQRDISIAL 849

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DDFGT  S L+YL   P D +K + + ++     K+ AI+ ++I M K++   ++A+ + 
Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            E  +  L +  CD++Q    + P+    I+  L+   P+ 
Sbjct: 910 TEEQVAYLQKQQCDFLQGYFFSRPIPAEQIIPYLQTDSPIS 950


>gi|229491557|ref|ZP_04385378.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
 gi|229321238|gb|EEN87038.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
          Length = 775

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/758 (20%), Positives = 316/758 (41%), Gaps = 36/758 (4%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
           R  +        +  L Y++     L+  V          R      +   L   + +++
Sbjct: 23  RRQIDEAAAVAPFANLAYMASLVVILTYTVP---PGRQTLRWLGGALIFLVLANSIRVWI 79

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
              RW        +  +  +  +  ++     + A +         L     +      G
Sbjct: 80  PL-RWRPSKHTPRYDYVGLLVEVIVVATLDVTLFALLFHDMDVFRDLVLIATMAGIMGAG 138

Query: 334 ---YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
              +     +   WI I    +   + +       I+  A+   + +  + +G   +   
Sbjct: 139 TVTFSSLRSVSLTWIYIHGLGVFTVLVVHAEPHFRIL--AIQLCIYMFALTVGAVYLSAS 196

Query: 391 LATGYFSQGIFSDGERQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                 ++   ++ ERQ++A+       GS D +W+ D       T+  +A + G+    
Sbjct: 197 FQRRCLAE-FQAESERQTVALLLDGFEGGSRDWLWECDTNGRFSHTSARLAEVAGMTVDE 255

Query: 445 MHG-PIRNWLPYI----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +        L  +        R     ++D          +        D +  W  +  
Sbjct: 256 LQQLTFGQLLTRLQIASSPEGRAAAAQMIDKL--ESSAPFRDTVVPVHVDGRRRWWSLSG 313

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P    +G IL + G+ +DITE+    + IL  A  D+LTG+PNR++F   L   +D  +
Sbjct: 314 NPRVLESGAILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAID--S 371

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                +  V ++D+D +K +ND LG  +GD +L+ +T+R+ +++   D+ +R+ G+ FG 
Sbjct: 372 RAPEKQVLVGILDLDNFKSVNDTLGHPIGDQLLLEVTKRLRDVI-GSDMCSRMGGDEFG- 429

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +++  ++            + +  P  +    I V A+IG++S       +  ++  A+L
Sbjct: 430 LIVCTSSRDDPGVIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTDADGLVMLADL 489

Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N V  F   + +  S R     +L   +E  +  L Y P +     E+V 
Sbjct: 490 ALYEAKSTGRNRVGKFSPLLRARASARATALHELDRGIEEGQFDLHYQPQVDTQTGEVVA 549

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP  G I  S+F+ +AEE  MI  +    +         W        I + 
Sbjct: 550 FEALLRWNHPSRGLIGPSQFISVAEETGMIIPLGAQAMAMATAAAAGWP-----TGIGVS 604

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   L+  E    ++  ++ +   P  ++L  +E+ V+ +  R+   L +LR++G++
Sbjct: 605 VNVSPVQLVSREFGAMVKKALTDSGLPPQLLQLEITETGVVDD--RAIRDLYKLRELGVT 662

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917
           + LDDFGT  S  + L  +P D +K +  L+T S + ++++++SI+ +A  +    +A+ 
Sbjct: 663 VALDDFGTGYSSFATLQRLPIDVLKIDRMLVTDSDDPKMSVVKSIVELAAALGMKSLAEG 722

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      + +  +GCD +Q  H++  L    +   L  
Sbjct: 723 VETIEQFRRVQWVGCDLVQGYHISKALTAERVDVYLAA 760


>gi|56751597|ref|YP_172298.1| hypothetical protein syc1588_d [Synechococcus elongatus PCC 6301]
 gi|56686556|dbj|BAD79778.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 837

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 149/793 (18%), Positives = 305/793 (38%), Gaps = 80/793 (10%)

Query: 218 LIPTFAMAWVVLGYISIDF--GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
           L+        V   I       F +   N        W   +    +SS I+F  + L  
Sbjct: 60  LLAAAVAQATVSALIGATGNCLFGAASWNRFFTIGWTWWTGN----ASSAILFFPVVL-- 113

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
             W  +              LF +S     +           +        ++  ++   
Sbjct: 114 -LWCNQWRQSLQLSAKRWLELFIISAIILAIATLAFASKPYPVSSLVIPVFVWLALR--- 169

Query: 336 RAVLLIPAWI---LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                   W+   + FI           +    ++    V   ++++     ++     +
Sbjct: 170 ----FNSTWVSTGITFITLFAFISTANGKGQFSVLA---VNEALILLQSYNSSIAVMSFS 222

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIR 450
                    +        +      V   ++             IL     S ++    +
Sbjct: 223 LNAVISQARNSQTYLRQILDHLPIGVAVHELTGRMTYVNAVGREILRGKYKSATLEEMAK 282

Query: 451 NW------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +         +   +       L   + +       +  +R  D     + +   P+ +
Sbjct: 283 FFNIYQASKNRLTPIEELPLAMALQGQLSHTE-----DLELRWPDRT-IPLEVWGIPIHD 336

Query: 505 SNGDILRYIGIANDI-----------------------------------TEQKKSLEGI 529
             G I   + +  DI                                   +E++++   +
Sbjct: 337 ETGHIKEGMTVFQDIHERLENARLIQQANEQLSLTVQELEAANHKLEQEASERQQAQAQL 396

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR  F+++L    +    D      V+ +D D++K +ND LG + GD
Sbjct: 397 WHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVNDSLGHSAGD 456

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  + +R+   +  P I ARL G+ FG+++    +     D A  + + I  P  +  
Sbjct: 457 VLLTQVAQRLQSCIASPVIFARLGGDEFGVLVP-AQDPGYPQDLAEQLHELIVHPFEIQG 515

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVM 706
           + I +  SIG +  ++    + E+L++A+ AMY AK      G  + S ++S+     + 
Sbjct: 516 QRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRNPLSRGIQIFSAKLSANSLKNLA 575

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A++ +++ L Y PI+ L    +VG EAL +W HP+ GNI   EF+ +AE   +
Sbjct: 576 LETALREAIKQADIDLFYQPIVDLETGALVGAEALARWFHPELGNIPPLEFVTLAERSKL 635

Query: 767 IKAINLFMLERIARDIISWRDQANMPP--IFILINIASKDLLDNELCEGMQALISKTLYS 824
           I ++  F+LE+    I  W+    + P    + +NI+++ +   +  + ++ ++ +T  S
Sbjct: 636 IFSLGNFILEKACLQIHLWQQDHLITPGDFILHVNISAQQICHEDFEDWIKDILQRTEIS 695

Query: 825 PSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              + L  +ES V  + + +   LL  L+ +G+ L++DDFGT  S LSYL  +P +++K 
Sbjct: 696 AQNLMLEITESSVAEDIDQQLLKLLDELKSMGVQLSIDDFGTGYSSLSYLQRLPVNSLKI 755

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +           + ++ I +A +    ++A+ I  E  +  L ++GCD  Q  + +
Sbjct: 756 DRSFIHQINLAGDNRQVAQATIALAHSFGLEVVAEGIEEESQLYWLRQLGCDMGQGYYFS 815

Query: 942 SPLGFNSILKLLK 954
            PL    + + L+
Sbjct: 816 KPLSAADMTEFLR 828


>gi|261854660|ref|YP_003261943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
 gi|261835129|gb|ACX94896.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
          Length = 788

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 133/562 (23%), Positives = 240/562 (42%), Gaps = 18/562 (3%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDN 463
           +   L V  + D++   D     +     I   LGLA     G   R  +          
Sbjct: 227 QLIELLVEATHDLIVIKDPEGRWLFANLSIVHSLGLAHVVWLGKTDRELVDLASP----T 282

Query: 464 FRTILDSFVGYRRGRLQYEFRVRA------ADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            R  L       +       ++R        D     + +  +P+ +  G     I +  
Sbjct: 283 VRGALQFCHETDKAAWNQGQQIRHLETIPCEDGHSLIVDVIKQPVFDDKGKPRAIIVVGR 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE   + E     A QD LTG+ NR+ F       +D+ + D +    ++V D+D ++
Sbjct: 343 DVTELHTTQEQFQILASQDELTGLLNRRFFQVEAQRWIDMLSDDGSKHLALLVFDLDYFR 402

Query: 578 KINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            IND  G   GD +L  + RR+  E +  P ++AR+ G+ F I++ ++N    ++     
Sbjct: 403 SINDSYGHERGDQLLQEMARRLQNECVASPLLIARMGGDEFAILVETDNKPESLSALGEQ 462

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++   A P  +    +  +AS G   W     +  E+L  A+ AMY AK +G N    F 
Sbjct: 463 VKSLTARPFQIEHLTLFTSASTGIVIWPEHGRSIGELLHQADSAMYAAKEQGRNGHAVFS 522

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS- 753
                       +   L  +  +   +LVY          I G+EAL++W  P     + 
Sbjct: 523 PEIMEHQNRQSALLTALRQSQGDERFFLVYQVQQNASSLAITGVEALLRWQAPSPELAAG 582

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ + E+  +I  +  ++L+   + I  WR+      I + +N++S  L        
Sbjct: 583 PDQFIPLLEKSGLIIDVGGWVLDEACQQIARWRE-YIGERITVAVNVSSIQLHSPCFIGR 641

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +QA + K+  +PS ++L  +E+ ++ +P ++   L  L+K+G+ L LDDFGT  S LSYL
Sbjct: 642 VQAALKKSGINPSLLELELTETALVNDPAKAASTLIELKKLGVQLALDDFGTGYSSLSYL 701

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               F+ +K + S +       K + I+++I+ M   +   ++A+ +    +   L  +G
Sbjct: 702 TQFEFNRLKIDQSFVRDILVDPKDLVIVKAIVAMGHALGLEVVAEGVETVAERDLLDSLG 761

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           CD  Q   V  P     I  +L
Sbjct: 762 CDSFQGYLVGRPGKPEEISPML 783


>gi|146338308|ref|YP_001203356.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS278]
 gi|146191114|emb|CAL75119.1| Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains precursor [Bradyrhizobium sp. ORS278]
          Length = 903

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 131/575 (22%), Positives = 259/575 (45%), Gaps = 21/575 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGL 440
               +          S  +    +   L V      ++ +       +        IL  
Sbjct: 320 FLIALFDDATERRSLSLELEKTKKFLELVVDNIPVSLIVESARDGRYLLANRSAEVILNR 379

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G         +  +        D     +R  +  E  +   D    ++  R+ 
Sbjct: 380 KREDATGLTAA--DIFNPRE-ARLIIARDEAAIRKRSLMTEEHPISTKDGLRLFLTRRVT 436

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            M +++ +    I    D+T+++++   +   A+ D LT +PNR +FL  L+ +++ +  
Sbjct: 437 VMGDAD-EPQYLIKTYEDVTDRRQTESRMAHMAYHDGLTDLPNRAAFLQALSQMIE-ACR 494

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D +    V+ +D+   K +NDV G A+GD +LV + RR+   +    +++RLSG+ FG+I
Sbjct: 495 DTDEEFAVLNVDLKGLKDVNDVFGHAIGDKLLVEVARRVHA-VSRGGVVSRLSGDEFGLI 553

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A  + ++IA+   +  + I    + G + +  +    + +L NA  A
Sbjct: 554 IDG-KQPEAARALAEQLAEAIAVEFQIEGKSIRTALTTGISVFPHNGSDPASLLANAGAA 612

Query: 681 MYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR----LMDEE 734
           ++ AK   RG        +     DR ++ ++L +A+++ EL L + P       +   E
Sbjct: 613 LFRAKAKARGSITFYEPEMDQQIRDRRVLHQELSVAIKHGELSLYFQPQANSGRTVDASE 672

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I G EAL +W HP  G +  S+F+ +AEE  +I  +  ++L    R+  SW       P+
Sbjct: 673 ITGFEALARWQHPVRGFVPPSDFIPLAEESGLIVEMGEWILREACREAASWPK-----PL 727

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++    +  +L   + +++ +T  SP R++L  +E V++ + +R   LL RL+ +
Sbjct: 728 QVAVNLSPAQFVHGDLVALVHSILLETGLSPGRLELEITEGVLIEDFDRGVALLRRLKAL 787

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S LSYL   PFD +K + + +       +  AI+R++I +   +  +
Sbjct: 788 GVRVSMDDFGSGYSSLSYLQAFPFDKIKIDRAFVMNLGRNPQSAAIIRAVIGLGHGMNMS 847

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I+A+ +     +  L   GCD +Q   +  PL  N
Sbjct: 848 IVAEGVETPEQLGFLAEQGCDSVQGYLLGKPLPIN 882


>gi|158320976|ref|YP_001513483.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141175|gb|ABW19487.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus oremlandii
           OhILAs]
          Length = 737

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 222/440 (50%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     E +   A+ D +T +PNR   L  L   +D +  D   R  ++ +D+D++K IN
Sbjct: 298 ELLLEKEKVHNLAYYDGITKLPNRVYLLKILGECIDSAN-DQKNRFGILNLDLDRFKHIN 356

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD++L  +  RIG +LK  +  AR  G+ F I++       ++ D A  + K 
Sbjct: 357 DTLGHHMGDEILKLVGERIGRILKPNNFFARFGGDEFIILVKHIQEDKELIDLANQIIKE 416

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +  P  L    + +T SIG + +     T ++++KN+++AMY AK +GGN    +  S  
Sbjct: 417 MDQPFMLNSHRLFLTTSIGISIYPEGGETLNDLMKNSDIAMYAAKGKGGNQYYIYDKSLS 476

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             + + +++   L  AV++ EL L Y PI+      IVG+EAL++W  P  G I  + F+
Sbjct: 477 EKQMEALILINQLRNAVDHDELTLFYQPIMNTSTGNIVGVEALLRWYQPGHGMIGPNTFI 536

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I +I  ++   +   I  W  +       + IN+++K   +    E +   +
Sbjct: 537 PLAEETDLIISIGKWVFRNVCAQIKDWIHRGYDVK-RVYINVSAKQFQEKGFLESILQAL 595

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  I +  +E+V++ + + +  L+ +L+ IGIS+++DDFGT  S  +YL  +  
Sbjct: 596 KEAELPPKYIGIEITETVIIQDIDHTIELIKKLKDIGISISIDDFGTGYSNFNYLKEMGV 655

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +  +    K+ AI ++II +A  ++  + A+ +  +  ++ L    C  IQ
Sbjct: 656 DEIKIDRSFIAETTKNSKKRAITKTIILLAHQLDIAVTAEGVETKEQLEFLRESSCSKIQ 715

Query: 937 DSHVASPLGFNSILKLLKER 956
             + + P+      K L   
Sbjct: 716 GFYYSRPVPPEEFEKFLNHH 735


>gi|329888165|ref|ZP_08266763.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846721|gb|EGF96283.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 784

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/756 (19%), Positives = 297/756 (39%), Gaps = 46/756 (6%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
                 +   A+A     + +     ++    + +    +    S    +   +      
Sbjct: 43  LSRVSWLFLGAVAGGATIWCTHFVAMIAYRPGVETAYEPMLTGVSLAV-AVLGVGLALAT 101

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
               R  +        G+A   + F       +           ++ +  +        +
Sbjct: 102 ASMRRRFSVEAGGALFGMAVAGMHFVGMAALSVEGVVHWSAVYLAVSIIGSVAFGALAFR 161

Query: 333 GYER----------AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                         A +++    L F     + +     LD  +        L L V  +
Sbjct: 162 LASTEERFARLKGGAAMVLGIVCLHFTAMAAMTVIPLGPLDGMLTGEDARHVLALGVAGV 221

Query: 383 GFTVIQHVLATGYF-SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           G  V+    A+     + +  + ER    +    D +   +     V     +A + G  
Sbjct: 222 GLLVLGAGAASHALDREALALNRERLQYLLETGVDGM-AIERDGVIVAVNEVLAELAGAD 280

Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             S+ G  + +W+   H  D                        +  A  Q   + +  R
Sbjct: 281 RDSLIGADLGDWVQDAHRLDDGAVTQT-----------------ILMAGGQEIPVELSAR 323

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
               + G  + Y     D+  +      I   A  D+LTG+PNR SFL+RLT     +A 
Sbjct: 324 RDLMARGRTMIY--AVRDLRARMAQERRIAHLARNDSLTGLPNRASFLERLTRQKQTAA- 380

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     +  +D+D++K++ND+ G AVGD +L  +  R+   L+  + +AR  G+ F   
Sbjct: 381 -EGESLALFALDLDRFKEVNDLYGHAVGDQLLCIIAERMKGALREGEFIARQGGDEFLA- 438

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L S     +    A  +R+++   + L   +++  ASIG + W       S ++ NA+LA
Sbjct: 439 LASVATRDEARAVAERLRQAVIQTVTLDHADVSCGASIGVSLWPEDAQDVSTLINNADLA 498

Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK      V  +     +    R  + + L  A+EN    L Y     +   +  G 
Sbjct: 499 MYRAKASLTQDVCFYEADMDQAVRARRRVTQALREALENERFELHYQVQASVETGKATGY 558

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W + +   IS ++F+ +AEE  +I  I  ++L +  R   +W +     P  I +
Sbjct: 559 EVLLRWKNDEGRYISPADFIPVAEENGLILPIGEWVLRQACRQAAAWEE-----PHRIAV 613

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   +L   +  ++ +T  +PSR++L  +E+ ++ +  R+  +L +L+ +G+++
Sbjct: 614 NLSPVQLSHVDLPRLVHQILLETGLAPSRLELEITETAMITDMARTTHVLRQLKALGVTI 673

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIA 915
            +DDFGT  S LS L   PFD +K + S MT       +  AI+R+++ + +++   ++A
Sbjct: 674 AMDDFGTGYSSLSTLKAFPFDKIKLDRSFMTELDGEAPQSRAIIRAVLTIGESLSIPVLA 733

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +     +  L   GC+ +Q   +  P      L 
Sbjct: 734 EGVETAEQLAFLRAQGCNEVQGYLLGRPQPEADALH 769


>gi|332993704|gb|AEF03759.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Alteromonas sp. SN2]
          Length = 799

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 150/761 (19%), Positives = 305/761 (40%), Gaps = 37/761 (4%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           +    ++    L               A S   L  +    +  YL   R     G    
Sbjct: 47  LASSATVLIVILCSFFANGLINSDFMIAWSLSLLIIAAGDVIAWYLLVKRKIENTGSKRV 106

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA--WI 345
             +  + +      Y  M T  +  +     ++       +     ++ A L   A  W+
Sbjct: 107 QFLLALMLGLAAVLYAQMTTVLLGVLDTQGKIILVAILAAFIATGAWQFASLPAAALFWV 166

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           L     + + + I+   +   I   L+   + +  ++  T  +              + +
Sbjct: 167 LFLTLGVSVGIHISYLGEYLFISALLLIYWIYLSCVVLVTSKR---FIRGLVAETAIEHQ 223

Query: 406 RQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           RQ + +        + D +W+ D        +  +  +LG     + G   +++  +  +
Sbjct: 224 RQVVGLLLKDFEENASDWLWEIDSHGCLKHVSLRMQHVLGKPVHQLSGS--HFVNLLSDS 281

Query: 460 DRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                + +L        +      +      +    W  +  +P+ NS G++  + G++ 
Sbjct: 282 TSAANQNVLRELATNFQQNEPFTQDNIPIEVNGDTKWWSLTAQPLINSTGNLSGWRGVST 341

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP------TVMVI 571
           D+T+     + +   A  D+LTG+ NR  F   L       A D    P      T++ +
Sbjct: 342 DVTDALLREKEMTFLANIDSLTGLANRHLFAKTLHECFADDAEDGTKTPEIIKDITLITL 401

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND LG   GD +L  ++ R  E+     +L+RL G+ F  +  +    L+  
Sbjct: 402 DLDNFKVINDTLGHLAGDALLKDISCRFKEITPKGVLLSRLGGDEFAWVFKNSLTPLEAT 461

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            F   + + +A P    E    + ASIG A+     ++   + + +++A+Y AK  G N 
Sbjct: 462 RFGQKIHELLAEPWLHQEHSFDLGASIGVANAPMDGVSPVSLQRASDMALYAAKASGKNK 521

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +         + +    D   +  + +  ++Y P IR  D  ++G EAL++W HP+ 
Sbjct: 522 LCFYDPKLDEYAMLRLALLSDFRQSFADGDFVVLYQPQIRFSDNTLIGFEALVRWHHPER 581

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S ++F+ + EE  MI  +  ++L +   D ++W       P+ + +N++   +    
Sbjct: 582 GVVSPTDFIHLIEENGMIVQLGEWVLRQACSDAMNWPA-----PLQVAVNVSPVQIERTN 636

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +   +  T    SR++L  +ES +M + + + +LL  LR+ G+ + LDDFGT  S 
Sbjct: 637 LLTTVIKALKATSLPASRLELELTESSLMCDGDSTIMLLNSLREQGVRIALDDFGTGYSS 696

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--------KRIAILRSIIPMAKNIETTIIAKDIYGE 921
           LSYL   PFD +K + S +  ++E           +IL +I+ +A  +     A+ +  +
Sbjct: 697 LSYLQRFPFDKLKVDRSFVIAASENVQNVNSANAESILSAILQLANALHLQTTAEGVETQ 756

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
                L ++G    Q      P+        +  ++P ++N
Sbjct: 757 DVSTLLQKLGFTNAQGFFYGRPMTAEHAENFI-SQWPDIQN 796


>gi|119470556|ref|ZP_01613259.1| putative Sensory box protein [Alteromonadales bacterium TW-7]
 gi|119446257|gb|EAW27534.1| putative Sensory box protein [Alteromonadales bacterium TW-7]
          Length = 1508

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/562 (22%), Positives = 249/562 (44%), Gaps = 14/562 (2%)

Query: 397  SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +F +  R  + A   + D V+  D   +   +   + T    A+  +     N    
Sbjct: 939  REMVFEEHARLFTAAFEQTRDWVFILDKNFNVRASNKSLQTAFNFAAEPISSRALNL--G 996

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +    R ++  I+             E  VR  + +   ++++I  ++++   +  Y+ I
Sbjct: 997  MSPKSRVDYLRIMKKLSEGE--HFSCEDMVRLHNGESRHVLVKISAVADTEQRLSSYVII 1054

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              DI  QK +   +   A  D LTG+PNR  F DR+   L+ +      +  ++ I+I +
Sbjct: 1055 LTDIHAQKLAESELHQLANFDVLTGLPNRTLFNDRVEHALEQAQKH-LCKAALLHINIKR 1113

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K  ND LG  V D+++  +  R+   L+  D +AR  G+ F +++   +   ++     
Sbjct: 1114 FKYFNDSLGHEVADELIKKVAERLKCSLRSSDSIARFGGDEFVVLVEDIHQIEEVLLICT 1173

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +   I++ ++ + +  SIG A        S  +LK A +A+YHAK    ++ + +
Sbjct: 1174 KLMDCVNQNISINDQVVNINLSIGVAISPDDATQSGALLKAANIALYHAKGALESNYQFY 1233

Query: 696  RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            +    +  +  + ++  L  A +  E    Y PII     +  G E L++W  P+   I 
Sbjct: 1234 KQEMNQHVQKALHLESQLTKAYQEHEFCNYYQPIINAHTHQTEGFEVLLRW--PENKRIQ 1291

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + EF L AE + +I  I L    R   ++  WR     P +++ IN+++ D    EL   
Sbjct: 1292 TQEFSLAAEGVGLITKIMLQTFGRALNELNEWRKA--SPDLYLSINLSALDFEFIELVPE 1349

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++  +         I    +ES++M +   +   + +L+++G  L +DDFGT  + L+YL
Sbjct: 1350 IKKALINANVPSEAIVFEITESILMRDSNLALQSMKKLKELGCKLYMDDFGTGYASLTYL 1409

Query: 874  GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               P D +K + S +          AI+ S + +A ++    +A+ +  +  +  LT +G
Sbjct: 1410 KRFPIDVLKIDRSFVQDIGIDSDDEAIIESTLTLAHSLGKECVAEGVESQQQLLFLTALG 1469

Query: 932  CDYIQDSHVASPLGFNSILKLL 953
            C + Q    + P+    +  L+
Sbjct: 1470 CKHFQGYLFSKPVPSEDVPALI 1491



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 12/190 (6%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF------ 401
                     +  ++   + +      +VL   L  F +   V       + +       
Sbjct: 764 LTGIFTKPATLKIKVKYPLWRAP--YFMVLYGALFLFFIAMWVRRRNKIQRILLAAHKES 821

Query: 402 -SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                R  LA+ GS   VWDW      +   P ++  LG    ++   +  +L  IH  +
Sbjct: 822 KDSESRLKLALEGSESGVWDWQSSNPSIYQ-PRLSNELGYKHDTV--SLDEYLAKIHPQE 878

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +  FR     F+   +G     +RVR A   + W     + +        +  G   ++T
Sbjct: 879 KQLFRLEWLEFLSTDKGYFNCTYRVRHAKGYWRWYKDFGKVVEWDEKTPQKVAGTYTNMT 938

Query: 521 EQKKSLEGIL 530
            +    E   
Sbjct: 939 REMVFEEHAR 948


>gi|170750649|ref|YP_001756909.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657171|gb|ACB26226.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 819

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 136/682 (19%), Positives = 269/682 (39%), Gaps = 35/682 (5%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           W   +     +    +A              +         +       +          
Sbjct: 142 WDPALAATAIAAGCGLAAAGMAIHVGRAGARARLAAATVLTLAIAVLHFLAMAAARVVPD 201

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
             L    + +    +   +A    +        ++    L ++L     I   LA     
Sbjct: 202 PALAVPQLGLARGVLAAGIAGMMAV--------ILAFAALTLMLDHLRRINVALARQG-- 251

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + +          +      +   D              +L L    M           H
Sbjct: 252 RMLREKTLLLDATLDSMDQGLIMVDAGGVVRVCNERALALLDLPRAMMQARPSYRAVLRH 311

Query: 458 INDRDNFRTILDSFV----GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              R   R    S          G+ Q   R R  +     +++ +R +  ++G    ++
Sbjct: 312 EASRRERRRPDRSIRTWIERGEAGQTQVHERAR-PNG----LVLEVRTVPLADG---GFV 363

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT++K +   +   A  D LTG+PNR  F + L   L            V+ +D+
Sbjct: 364 RTFTDITKRKAAEAEVARLARHDVLTGLPNRALFHETLERSLADIVQRGGA-CAVLYLDL 422

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND LG   GD++L  +   +  +      +ARL G+ F ++  S+  + +    
Sbjct: 423 DGFKSVNDSLGHQAGDELLRRVAAGLRGIAGDGA-VARLGGDEFAVL--SDGGAAEAGAL 479

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +      P ++    + V  S+G A        +  + + A+LA+Y AK  G     
Sbjct: 480 AERLIALFDSPFSVGGHRVGVGLSVGIALAPEHGTDAEPLYRRADLALYRAKAEGRGTYR 539

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F   +     +R +++ DL  A++++ L L Y P +      +VG EAL++W HP  G+
Sbjct: 540 IFTPAMDEEAEERRVLERDLRQALDDNTLGLHYQPQVDGHTGALVGFEALLRWTHPVRGS 599

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S + F+ +AEE  +I A+  ++L    R+   W       P+ + +N++ +     +L 
Sbjct: 600 VSPNLFVPLAEETGLIVALGDWVLREACREAAQWAQ-----PLKVAVNLSPRQFQKPDLP 654

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E + A++++T  SP R++L  +ES+++ +  R+  +L RL+  GI +++DDFGT  + L+
Sbjct: 655 ETVLAILAETGLSPDRLELEVTESIIINDMARAVGILRRLKSYGIRISMDDFGTGYASLA 714

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   PFD +K + S +   G+  +   I+R+++ + +++   ++A+ +     +K LT 
Sbjct: 715 TLQAFPFDKLKIDRSFVAQLGTGPQAAVIVRAVLSLGRSLGMGVVAEGVETHAQMKFLTE 774

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
             C  +Q      P        
Sbjct: 775 EACGEMQGYLFGRPRPITDYAA 796


>gi|119477173|ref|ZP_01617409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor(s) [marine gamma
           proteobacterium HTCC2143]
 gi|119449536|gb|EAW30774.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor(s) [marine gamma
           proteobacterium HTCC2143]
          Length = 642

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 124/527 (23%), Positives = 244/527 (46%), Gaps = 17/527 (3%)

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFH 493
           +LG+++ +++             D+D F     +   ++   +   + E ++R AD    
Sbjct: 121 LLGISTNALYQQPLAQYFI--KEDQDKFYLFCKAIQRHKNDTISPCECELQIRRADGTQL 178

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W+ +      + +      I + N++T+   +++ I   AF D LTG+PNR+   DRL  
Sbjct: 179 WVNLTGIYTQSEDNKPELQI-VLNNVTDTHNNIDEIRRLAFFDPLTGLPNRRLLFDRLAH 237

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +  SA   NL   VM++D+D +K +ND +G  +GD +L  ++ R+   ++  D LARL 
Sbjct: 238 AVTTSART-NLYGAVMLLDLDNFKILNDSMGHGIGDLLLQKVSLRLKMCMREDDTLARLG 296

Query: 614 GNRFGIILISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           G+ F I+L + ++       +       +  S+    NL       TASIG   +    +
Sbjct: 297 GDEFVILLENLSSDEKKAAAQAEVVTQKILVSLVEDYNLQGFVHNSTASIGIVMFKGDDL 356

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHP 726
           +  ++LKNA++AMY AK    N    F             ++  L   +   E  L Y  
Sbjct: 357 SFGDLLKNADVAMYQAKAASRNTFRFFDPVMQAIAERRTQLENALRQGLVQEEFVLNYQI 416

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
                + +  G+E+L++W +P++  +S+ EF+ +AEE  +I  +  ++LE     + +W 
Sbjct: 417 QTN-SNGKTTGVESLVRWINPEYATVSTGEFIALAEETDIIFLLGQWVLETACAQLAAWS 475

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
               M    + +N+++     +     ++  + K+  +P+ + L  +ES+++ +   +  
Sbjct: 476 QHPTMSSWSMSVNVSALQFKKSSFVGNVETALEKSDANPNLLILELTESMLVDDVPSTIE 535

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            + R++ +G+  +LDDFGT  S L+YL  +P D +K + S +          AI  +II 
Sbjct: 536 KMKRIKSLGVRFSLDDFGTGFSSLAYLKRLPLDQLKIDQSFVHDLIVGSDDAAICETIIT 595

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  ++   +IA+ +      + L  MGC   Q  +   P   ++   
Sbjct: 596 LGISLGICVIAEGVETADQYECLMEMGCKSFQGYYFGRPTVASTFAD 642


>gi|89092612|ref|ZP_01165565.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89083124|gb|EAR62343.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 862

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 228/441 (51%), Gaps = 7/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I       E +   AF D+LT +PNR     +L  ++  +         ++ ID+D +K+
Sbjct: 425 IDGLNMQAEELRHRAFHDHLTSLPNRMHSSTQLDLMISHTIKHQ-ATAALLFIDLDHFKE 483

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG + GD++L  +++R+   ++  DI+ARL G+ F +I             A  + 
Sbjct: 484 INDTLGHSTGDELLRKVSQRLRRSVREEDIVARLGGDEFTVITGVLETRSDAESIAQKLL 543

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
             +  P  +   E++VTASIG + +      S  +L+NA+ AMY AK  G N    +   
Sbjct: 544 NELIRPYLIDGNELSVTASIGVSFFPEDGDNSEILLRNADSAMYEAKRNGRNGYRLYTSA 603

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++   S+R  + E+L  A+   EL L + P + +    I+G EAL++W+HP+ G I    
Sbjct: 604 MTEEISERFALTEELREAISREELELYFQPQVDIRTGSILGAEALLRWNHPQRGMIPPDR 663

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE    +  I  ++LE++   +  W+++  + P  I +NI+++  ++ EL E +  
Sbjct: 664 FIPIAESSGQMIKIGAWVLEQVCAKVAGWKERGIVAP-KIAVNISNQQ-MNRELVEQITE 721

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L++ +   P+ ++L  +ES +M NPE+    L  L+ +G+ + +DDFGT  S LSYL  +
Sbjct: 722 LLASSKCDPACLELEITESCLMENPEQMAHELSSLKALGVGIAIDDFGTGYSSLSYLKQL 781

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + S ++     E  +AI R+I+ M +++   +IA+ I  +  I  L ++ C  
Sbjct: 782 PINKLKVDRSFVSDLQDDENDLAITRAIVAMGQSMNLNVIAEGIETQEQIDLLLKLECFE 841

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + PL     L  L +
Sbjct: 842 GQGYFYSKPLPEEQFLAYLDQ 862


>gi|332702853|ref|ZP_08422941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio africanus str. Walvis Bay]
 gi|332553002|gb|EGJ50046.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Desulfovibrio africanus str. Walvis Bay]
          Length = 892

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 140/589 (23%), Positives = 260/589 (44%), Gaps = 18/589 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSGDIVWDWDIV 424
           +    + G  + IV +   + ++  L      +  F    ER  LA           D  
Sbjct: 313 VTASLIPGTSLSIVSMRDVSELKDALFQRDLQKAYFEQLFERVPLA-------TVLVDPQ 365

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +        + G       G   N L  +     D    I       +      E +
Sbjct: 366 DRVMAVNNAFERLFGFGREESQGRSINSL-IVPPELTDEATGISRQTQDGQLVF--AESK 422

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            R AD +   + I   P+           GI  D+TEQ ++ + ++  A  D+LTG+ NR
Sbjct: 423 RRTADGRTLDVSIIGTPVY-VGQRQEAVFGIYQDVTEQNRTRQQLVYQANHDHLTGLSNR 481

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +  L R+   +      D     V+ +D++++K +ND LG   GD +L+ + R + + L 
Sbjct: 482 RRLLTRVGDAIRRGKHVDRYDFAVLFLDLNRFKVVNDSLGHLFGDAMLIIIARMLQDSLG 541

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              ++ARL G+ FG+++        +  F   +++ +  P  ++ R++T +AS+G     
Sbjct: 542 DNGVVARLGGDDFGVLVEHPQVEDFVRSFVRRVQERLRTPFQVMGRQVTTSASVGVVFGR 601

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
           +    + + L++A LAM  AK     + + F             ++  L  A++N E  +
Sbjct: 602 AEYARAEDYLRDASLAMQRAKVEANENCQVFDGRMHDHAMRRMLLESSLRTALDNQEFVM 661

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI+ L+  E  G EALI+W+    G +   EF+ +AEE  +I  +  + LER   D 
Sbjct: 662 HYQPIVELVSGEKRGYEALIRWNRKGEGIVPPDEFIPLAEETGLIVPMGYWALERACLDF 721

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                  N   + + +NI+ K   D E+   +++++ +T     R++L  +ES++M +PE
Sbjct: 722 GRLCA-PNSHELSLSVNISGKQFRDPEIYSRVKSILRQTGMPAERLRLEITESMLMQDPE 780

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT---GSTEKRIAIL 899
               +L RL+ +GI +++DDFGT  S LSYL   P D +K + + +     S+   + ++
Sbjct: 781 NVSRILSRLKNLGIKISVDDFGTGYSSLSYLSRFPIDVLKIDKAFVAPLEQSSPTAVRLV 840

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           ++II +  ++   ++A+ +     +  LT +GC   Q    A P     
Sbjct: 841 QTIITLGNSLGLEVVAEGVESSKHVSRLTSLGCSLGQGYLFARPASLAD 889



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           +V  ++  G      V  +   ++      E      +  +G            V    +
Sbjct: 190 MVCFILQQGVEASVAVDDSQAGNESPAPSIEGSFRAIIENTGTAAMIVAADMTIVHINTE 249

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQF 492
              ++ L   S+ G + +W+ + H +D +   +   + +  +      YE R+  +  + 
Sbjct: 250 FEKLVHLPRESVQGRM-SWMDFCHPDDLERTMSYHRTRLAQKSSAPSAYETRLVDSAGEV 308

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQK-KSLEGILCNAFQDNL 538
             +++    +  +       I    D++E K    +  L  A+ + L
Sbjct: 309 RHVMVTASLIPGT----SLSIVSMRDVSELKDALFQRDLQKAYFEQL 351


>gi|289648514|ref|ZP_06479857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 897

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L         D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTSAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897


>gi|78778282|ref|YP_394597.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498822|gb|ABB45362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 577

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 135/555 (24%), Positives = 255/555 (45%), Gaps = 13/555 (2%)

Query: 404 GERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            ER +LA+     + + +   +              I G       G         IH  
Sbjct: 22  EERLNLALNFFESTNEGILIANREGLIKFVNRAFCEITGYTQEEAIGKKPNILKSGIH-- 79

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D   F   +   +  + G  + E   +  + + +  I+ I    NS      Y+ +  DI
Sbjct: 80  DIA-FYKSMRESLE-KNGYWKGEIWDKRKNGEIYPQILSISKNKNSKFSENYYMSVFTDI 137

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++ KKS + +  NA  D+LT +PNR  F   L  IL  +   +N +  +  IDIDK+K++
Sbjct: 138 SDIKKSEKKVYYNANYDSLTKLPNRTYFNKELEAILKEADK-ENYQVALYFIDIDKFKEV 196

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD +L+++++R+   ++  D++AR+ G+ F +I  +  +   +   A  ++K
Sbjct: 197 NDTHGHNVGDKMLINVSKRLLNSIRENDVIARIGGDEFVLIAKNIKSEENVKQLASNLKK 256

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I  P+ +  +   V  SIG A +    I+S E+LKNA++AMY  K    +  + +   +
Sbjct: 257 KIKEPMEVDNQIFHVGLSIGVAIYPQHGISSEELLKNADIAMYEVKKSTRDGFKIYDKLM 316

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S+  +  + I++D+  A+E     + Y P+I +    I+G EAL++W+HP+ G +    F
Sbjct: 317 STKIAMAISIQKDIRKALEEDMFIVYYQPVIDMHTNSIIGAEALVRWNHPQKGILEPESF 376

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +       + +     +   I  D+    +      + I +NI+   L ++  C     +
Sbjct: 377 LQYVLSGDVGREFGCMVFSEILTDLKHINETLPKSKLQISVNISKYQLSNSTFCFDFLNI 436

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +   +  +++L   E+ +M N E  +  +  L   G ++  D+FGT  S LSYL  I 
Sbjct: 437 FERNFINADQLELEIIETEIMQNREMIKKNVEELSLCGFNIAFDNFGTGYSSLSYLRDIK 496

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      EK + I++SII + K  +  + A+ +  +    +L  +GC + 
Sbjct: 497 VDKLKIDKSFVKNMLENEKDLNIVKSIIDIGKLFDLKVQAQGVETKEQYIKLKEIGCHFS 556

Query: 936 QDSHVASPLGFNSIL 950
           Q  + + PL  +  +
Sbjct: 557 QGFYHSQPLCVDDFM 571


>gi|322417650|ref|YP_004196873.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M18]
 gi|320124037|gb|ADW11597.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M18]
          Length = 729

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 132/438 (30%), Positives = 229/438 (52%), Gaps = 7/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++    +   A  D LT +PNR  F DRL   L  +         V+ +D+D +K IND
Sbjct: 261 LRQRQAHLQQLAHYDPLTRLPNRTLFYDRLGQALFHADRAREA-VAVIFLDLDHFKDIND 319

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L+ +  R+  +++  D +ARL G+ F +   +  N    A     +    
Sbjct: 320 TLGHRTGDLLLIEVASRLSTVVRSCDTVARLGGDEFTLFCQNVANVDNAAVVGQKLISLF 379

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
           A P  L   +I VTAS+G   + +   T  E+L NA++AMYHAK  G N    F   ++ 
Sbjct: 380 ATPFQLGASDIHVTASVGVTLFPNDGKTVDELLMNADIAMYHAKGCGKNVFALFDKKMNE 439

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             S+RV +  DL  AVE+SE  L Y P + L+  ++  +EAL++W HP+ G ++  +F+ 
Sbjct: 440 HASERVTLLADLRQAVEHSEFLLHYQPKVDLLTGKVTSVEALVRWMHPRLGLLAPDKFIR 499

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  MI  +  +++        +W+D     PI + +N++       ++ + + +++ 
Sbjct: 500 LAEESGMIVELTEWVMRTACLQARAWQDA--NLPIRVAVNLSPYHFQRQDVKQAICSVLG 557

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   PS +++  +ES +M N E +  +LG LR++GI++++DDFGT  S LSYL   P  
Sbjct: 558 ATALDPSLLEIEITESALMQNDEYTCRVLGELREMGITISVDDFGTGYSSLSYLHRFPIH 617

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + + +     + +  AI+ +II MAK+++  I+A+ +     ++ L   GC  IQ 
Sbjct: 618 TLKIDRTFILNMMKSAEDQAIVTAIIAMAKSLKMQIVAEGVETVDQLETLKDQGCHEIQG 677

Query: 938 SHVASPLGFNSILKLLKE 955
             V+ P+   S+ +   +
Sbjct: 678 FLVSRPVNAESVARFFTD 695


>gi|330957105|gb|EGH57365.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 897

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 151/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSSEEVSGRK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  + +   ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTTSNSWQGEFKSRRKNLEPYWGQLSISKVYSDTRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITESKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +          A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQTTAAE 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFGH-LQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL +DDFGT  S  SYL 
Sbjct: 748 AAILREEALDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMDDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ L +R+P   + 
Sbjct: 868 DVGQGYLFDKPIPGEELIEKL-QRYPRRPSA 897


>gi|229130597|ref|ZP_04259553.1| Sensory box protein [Bacillus cereus BDRD-Cer4]
 gi|229147888|ref|ZP_04276229.1| Sensory box protein [Bacillus cereus BDRD-ST24]
 gi|228635538|gb|EEK92027.1| Sensory box protein [Bacillus cereus BDRD-ST24]
 gi|228652936|gb|EEL08818.1| Sensory box protein [Bacillus cereus BDRD-Cer4]
          Length = 735

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   +     LF ++F      
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 66  EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      ++        Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + + +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + + L +  CD+IQ   ++ 
Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKQLNLEVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|114570741|ref|YP_757421.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Maricaulis maris MCS10]
 gi|114341203|gb|ABI66483.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Maricaulis maris MCS10]
          Length = 809

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 171/792 (21%), Positives = 328/792 (41%), Gaps = 67/792 (8%)

Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL 265
           L     V  + +    F         + I FG L  +++L             I +S+  
Sbjct: 50  LLFAGFVTGTGIWGTHFVSMLAYESVVPIAFGLLETVISL----------ALAIIVSACG 99

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY-TY 324
             F              G +   GIA +  +   +     +    A + +A+IVL     
Sbjct: 100 WAFAIRS-ETRFAAPIGGALVGGGIAAMHFMGIEAMRTNAIFTWDAGLIIAAIVLAIQFS 158

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-----------NDIIQPALVG 373
                   G      LI   +L+    + L       +              +    L  
Sbjct: 159 AAASTVAMGKSLKPSLIGGTLLLVCGVVSLHFISMGAMQLVPDMTVAEPEGGLSPKLLAV 218

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTP 432
            + L V+ +    +       +  +   ++G R       + + +    +   ++     
Sbjct: 219 TVALGVVFVVSVGLATAAIDLHLGKRRMAEGARMRALAEATFEGIAV--VRDGQMYDMNG 276

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
               +L LA   + G     L  +   D           +   +       R+R  D   
Sbjct: 277 RFCEMLNLAREDLVGTPIMKLA-VDPEDI--------RVLQLDQDDAPTTCRLRCRDRAP 327

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             + +R R + + +G   R      D++ ++++   I   A  D LTG+PNR  F + L 
Sbjct: 328 ITVQVRAR-VMDFDGQSSRIF-TFRDVSSEERARARITHLAHHDTLTGLPNRLKFREALE 385

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L  +  D++ +  +M  D+D++K++NDV G A GD +LV+++ R+ + L    + ARL
Sbjct: 386 AELSSAW-DNDSQVALMFFDLDRFKEVNDVHGHATGDRLLVAVSERLLDALPRNAVAARL 444

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
           SG+ F +IL   ++     + A  +  ++  P+++    + V+AS G   +         
Sbjct: 445 SGDEFAVILPDVDSREDGLNTARRVVNNVGSPLSIGSLHLKVSASGGVTMFPLDGEDPDR 504

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++  A+LA+Y AK +G N V  F         +R M++ DL LA+E+  L L Y P +RL
Sbjct: 505 LMNQADLALYRAKGQGRNQVCDFDPKLGMMMQERRMLEADLALAIEDDLLTLNYQPQVRL 564

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I G EAL++W   + G ++ +EF+ IAEE  +I  +  ++LE   R+ ++W +   
Sbjct: 565 GDGSIAGFEALVRWHDDRRGAVAPAEFVQIAEETGLILKMGEWVLETACREAVNWPN--- 621

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++        L   +Q  ++ +   P+R+++  +E V++ +  R+  +L  
Sbjct: 622 --DRRVAVNVSPAQFKQGNLVYSVQRALTNSGLDPARLEIEITEGVLIDDEARALKVLRG 679

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+ +G+ L +DDFGT  S LSYL   PFD +K + S +TG    ++   I+R+ I +A++
Sbjct: 680 LKDLGVGLAIDDFGTGYSSLSYLRAFPFDKIKIDRSFITGLQNDQEAQIIVRATIALARD 739

Query: 909 IETTIIAKDIYGEIDIKELTRMGC--DYI-QDSHVASPLG--------------FNSILK 951
           +   ++ + +    +  EL  +G   D + Q   ++ PL                  +  
Sbjct: 740 LNIAVVVEGVE---EFDELGALGYQPDLVLQGYLLSRPLTRGLISGFDEASKAIRAEMAT 796

Query: 952 LLKERFPLVKNT 963
           L+    PL + +
Sbjct: 797 LVASARPLRQRS 808


>gi|158338258|ref|YP_001519435.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158308499|gb|ABW30116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [Acaryochloris marina MBIC11017]
          Length = 911

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 146/611 (23%), Positives = 279/611 (45%), Gaps = 19/611 (3%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG----IFSDGERQSLAVLG 413
           IT  L+    +    G  +L ++     ++                +    E+  L + G
Sbjct: 307 ITGILNAASSKRIKDGNQLLSILTTLAELMGSTFERIRLQDEAAAVLRDSEEQVRLFIDG 366

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFV 472
           S  ++   D        +   A+ LG     + G        +H +D+    +  L +  
Sbjct: 367 SPLLLLALDSQGMIHRVSHFGASQLGYLVDHLIGSP---FSILHPDDQTAEIQAYLQTLS 423

Query: 473 GYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
               G     E ++  AD    W     R + +  G     +    DI++ +   + +  
Sbjct: 424 NLEIGEIYSREAQMLQADGTLIWARQNARRVHDHRGIPQLLLA-CEDISKVRSLTDQLHF 482

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LT +PN   F   L  ++  +A        ++ ID+D +KK+ND L  A+G+++
Sbjct: 483 MAHHDALTALPNHTLFRHTLEALIAKTADQP-TPFAMLFIDLDGFKKVNDSLSHAIGNEL 541

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +R+   +   D +ARL G+ F ++L    +    A  A A+ + +  P ++   E
Sbjct: 542 LCQVAQRLQGAVTSSDTVARLGGDEFVVLLPRAASPDAAAKMAQAILQQLRTPFHVQNHE 601

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
           I +  SIG + + +   TSSE++K A+LAMY AK +G N+ + +          ++ I+ 
Sbjct: 602 IFIGGSIGISLYPAQGKTSSELMKQADLAMYRAKAQGRNNYQFYSAQLSATLQRKLAIEH 661

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+E  EL LV+ P +     +I+GLEAL++W HP  G +  S F+ IAEE  +I A
Sbjct: 662 ALRTAIEKDELNLVFQPQVGPE-GQILGLEALVRWHHPTLGIVPPSTFIPIAEESHLIAA 720

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRI 828
           +  ++L+     +           +++ +NI++++ L    L + ++  ++      S +
Sbjct: 721 LTDWVLDHSLAILAPLNSAYPH--LYVAVNISAQEFLAPCTLVKRVRRALTAAKLPGSAL 778

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ESV +   E    LL  L+  G+ + +DDFGT  S L+YL  + FDT+K + + +
Sbjct: 779 ELEITESVFLHPGEVPSQLLTALKNEGVRIAIDDFGTGFSSLAYLLNLSFDTLKIDRTFV 838

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +       +  I++ I+ +A ++  T +A+ I     +  L R+GC + Q  +  +    
Sbjct: 839 SDIDIDPAKEGIMKGILTIANSLGVTFVAEGIESSSQLHCLQRLGCSHYQGYYFQAATAM 898

Query: 947 NSILKLLKERF 957
           + +L L+ ++F
Sbjct: 899 DQLLPLIDKKF 909


>gi|260223016|emb|CBA33156.1| Uncharacterized signaling protein PA1727 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 823

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 142/603 (23%), Positives = 262/603 (43%), Gaps = 22/603 (3%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
               L+   ++ VI  G    + +      S+   S  ER    +    D +   D+   
Sbjct: 227 WVGGLLILALMAVIYAGLHAQKLMKQILEDSRQRVSLAERNRSVLNAVDDAILGIDLNGT 286

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                P  + +L L S  +          + +         L+S  G R   L     + 
Sbjct: 287 VTFANPSASNLLLLTSDDILT--LEIKDLLPLEYSGPLLASLNS--GQRWSSLSST--LI 340

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            ++ +     +    +  ++      IGI  DI+E+K   + +   A  D LTG PNR  
Sbjct: 341 DSNGRRFPAEVSCTVVRYNDKIRGGVIGI-RDISERKFFEDQLYLKANFDTLTGAPNRNY 399

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F + +   L +  +D +   ++M++DI+ +KKIND +G   GD +L     R+   +   
Sbjct: 400 FAEYVGNCLMVMGSDQS--GSLMLVDIEGFKKINDSMGHDTGDLLLKYAYERLVATVGPA 457

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           +++AR   + F + L    N  + A+ A  +  + +   N+L   +   ASIG + + + 
Sbjct: 458 NMVARFGNDEFAVCLGGCKNQAEAAEIAQKVLNAFSESFNVLGHVVWAGASIGISVFPTD 517

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVY 724
             T +++L+ AE+AMY AK  G +    +          R  ++ DL  A+  +EL L Y
Sbjct: 518 GSTPNDLLRRAEMAMYKAKSLGKDEFSFYSAELDVDTQGRRTLEVDLRRALAQNELELFY 577

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+ +    +  +EAL++W  P+ G IS   F+ +AEE  +I  + +++LE   R + +
Sbjct: 578 QPIVTMGSAAVSHVEALLRWRDPQKGLISPDTFIPLAEETGLIVEMGVWVLEESCRQLAA 637

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + IN++ + +        +   +S+     S++    +ESV++      
Sbjct: 638 WHKAGLDAHVGVAINVSGRQVPRGLSLACITETLSRYGLDGSQVSFEITESVLLDGSGTV 697

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-----TEKRIAIL 899
              L  +R +GI L +DDFGT  S LSYL ++    +K + S + G       ++  +++
Sbjct: 698 AEWLSGVRNLGIRLMIDDFGTGYSSLSYLKHLQAAALKIDKSFVWGVAGESENKEDQSLV 757

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI------LKLL 953
            +II MA ++   +IA+ +        L R  CD+ Q      PL   +       L LL
Sbjct: 758 LAIISMAHSLGLPVIAEGVETNEQADWLLRNQCDFAQGYLYGRPLPAENFRSSIVPLSLL 817

Query: 954 KER 956
           + R
Sbjct: 818 ESR 820


>gi|254560441|ref|YP_003067536.1| sensory box-containing diguanylate cyclase/phosphodiesterase;
           permease, PAS/PAC, GGDEF and EAL domains
           [Methylobacterium extorquens DM4]
 gi|254267719|emb|CAX23566.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens DM4]
          Length = 815

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 139/682 (20%), Positives = 271/682 (39%), Gaps = 19/682 (2%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
            +   I+      + + +         +AS     L   +        Y        + L
Sbjct: 129 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 188

Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397
             IP  +  FI        I   +   ++  A   G+ V  +  +    I   +     S
Sbjct: 189 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 248

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I             + D +W+ +        +P +A  LG     +       L    
Sbjct: 249 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 305

Query: 458 IN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            + D D    +L      +    +    +        W+ +  +P ++  G +  + G+ 
Sbjct: 306 EDRDEDRTTDLLSHLWQGK-AFHECLVAIETPTG-LRWLALSGKPFTDQRGTLAGFRGVG 363

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D+T+++++   I   A +D LTG+ NR  F D        S      R  ++ +D+D +
Sbjct: 364 SDVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEACTASMR-GGPRVHLLYLDLDGF 422

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GDD+L  +  R+   +     + RL G+ F I+     ++      A A
Sbjct: 423 KKVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHRGRESAE-AEILAEA 481

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  S+  P  +   +  +  SIG A          ++++ A+LA+Y AK  G    + F 
Sbjct: 482 VIASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFE 541

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       +   +   + N E+ L Y P++ L D E+VG EAL++W  P  G +S 
Sbjct: 542 ADLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSP 601

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +E + IAE    +  I  + L     + ++W       P+ + +NI+S      +  + +
Sbjct: 602 AELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEV 656

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A +  T  +P R+++  +ES+ + N       L  LR  G+ + LDDFGT  S LSYL 
Sbjct: 657 EAALDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLT 716

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +   +   + +A++++I+ +A ++   +  + +  E   + L    C
Sbjct: 717 QYPVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRC 776

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
           +  Q    +       +  L++
Sbjct: 777 NSAQGFLYSPARPSGEVTGLIE 798


>gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille]
 gi|151283116|gb|ABR91526.1| sensory box protein [Janthinobacterium sp. Marseille]
          Length = 914

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 135/633 (21%), Positives = 283/633 (44%), Gaps = 28/633 (4%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A   +  +    I  +     + +   +          +   + +     +   L   + 
Sbjct: 288 ASSSLNGYPFFAIVGMSQDSVLARYTVHRDTIRNAAIAITTFLFVFAVIAVVMSLRLAWK 347

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---------VTTTPDIATILGLASGSMHG 447
           S  + +      +A     +  + W  ++DR         +      AT  G +   +  
Sbjct: 348 SHRLDAVRNTYRIATEFGNEGYYIWSAIQDRNGYLVDFEIIDCNERGATFFGTSKEKLLN 407

Query: 448 PIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              + + +I    R    T++    +   +G  + +F ++A +  +    +    +   +
Sbjct: 408 TQLSTVEFI----RGYLYTLMQQSRIAMEKGFYEDDFEMQAHNQGWIHKRM----LRCED 459

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G          D++++K   E +   A +D LT +PNR   ++ L   L+ +    +   
Sbjct: 460 G----LAVTFRDVSDRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQD-SL 514

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D +K IND LG + GD +L  +  R+  +L+  D + RL G+ F ++L S   
Sbjct: 515 AVLFIDLDDFKNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPL 574

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              I+  A  + ++   P  + ++ +T++AS+G + +      +  +LKNA++AMY AK 
Sbjct: 575 QEDISLIANRIMQTFNQPFEIQQKMLTISASMGISRYPFDGRDAETLLKNADIAMYSAKA 634

Query: 687 RGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N V  +    +    + +  +  L  A++     + Y P +      +VG+EAL++W
Sbjct: 635 DGKNKVRVYDKKLYEEIELRVDGERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRW 694

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G I+   F+ +AE   MI  +   ++E++   I +W+ Q     + + +N++++ 
Sbjct: 695 AHPERGLIAPDHFIPLAESTGMILPLGRLVMEKVFCQIAAWQFQKLAV-VPVSVNVSARQ 753

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             +  + E + + ++K    P  I++  +ES +MGN E+ R  +  +  +GI + +DDFG
Sbjct: 754 FDEGNVSEFIASCLNKYAVDPRFIEIELTESAMMGNFEQVRGEISSISALGIQIHVDDFG 813

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LS L     D +K + +  +     +       SI+ MAK ++  ++A+ +    
Sbjct: 814 TGYSSLSLLYKFNMDVLKVDRAFTSQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIE 873

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++ L ++GCD IQ   V+ P+  + + +LL +
Sbjct: 874 QLRVLQQLGCDEIQGYLVSKPIPSSDVPRLLDQ 906


>gi|159897637|ref|YP_001543884.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890676|gb|ABX03756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 596

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 151/567 (26%), Positives = 274/567 (48%), Gaps = 31/567 (5%)

Query: 405 ERQSLAVLGS-GDIVWDW---------DIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           +R+  A   S    +W W         D     +  +P +   LG  + S++G   ++  
Sbjct: 42  QRRRTAQRISTQLGLWHWPHSQQTVIIDQHATIIAISPLLNQQLGYPALSLNGQ--SFKH 99

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H +  + F  +L +             R R AD  +  +      +      +L    
Sbjct: 100 LLHPDSSNYFEQLLHT---QTTQIHWQMLRCRHADGSWRGLEFCRHQV--GRYWLLNCRE 154

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               +T Q+            D LTG+PNRQS + +L  ++     D      V+ +++D
Sbjct: 155 TEPVVTAQRTPPAC-------DWLTGLPNRQSLVIQLQRLIAQRQLDQQ-HFAVLFVEVD 206

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++  IND LG  VGD VL ++ +R+   L   D+ ARL G+ F ++L    ++ +  + A
Sbjct: 207 RFSAINDALGYDVGDQVLQTIAQRLQSTLGPNDLAARLGGDEFVVVLGHVQHAQQALEHA 266

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +++  + PI L ++ I  T  IG       +  +  +L+ A+ AMY AK  G + +  
Sbjct: 267 QRIQEQFSQPIVLRDKPIYTTLGIGVTL-GDGQSQAETLLREADTAMYQAKTNGISQIFL 325

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +   +  +R  ++ DL  A+E  EL L Y PI  L   ++VG+EAL++W HP+ G I
Sbjct: 326 FDRALHAALAERWQLEIDLRGALERHELILHYQPITALPTGQMVGVEALLRWHHPQRGMI 385

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELC 811
             +EF+ +AEE  +I  I  + LE      ++W+   + P + +  +N++++ L    L 
Sbjct: 386 LPNEFIHLAEESGLIVPIGFWALETACLQFLAWQADYSRPRLQVLSVNLSARQLASPALV 445

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  +I +T  +P++++L  +ES+V+   E +R  LG ++ +G+ L +DDFGT  S LS
Sbjct: 446 QTLGEIIQRTGINPAQLELEITESMVIHGFELARAQLGAIKNLGVKLAIDDFGTGYSSLS 505

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL + P DT+K + S +   ++      I+R+II +++ +   +IA+ I    +   L  
Sbjct: 506 YLHHFPLDTLKVDRSFVNAMSDGSRNVEIVRAIIMLSQQLAMNVIAEGIETIEEAATLRD 565

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCDY Q  H + P+    I   L  +
Sbjct: 566 LGCDYGQGYHFSRPMTAPDITSWLHSQ 592


>gi|89092334|ref|ZP_01165288.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum
           sp. MED92]
 gi|89083422|gb|EAR62640.1| multisensor diguanylate cyclase/phophodiesterase [Oceanospirillum
           sp. MED92]
          Length = 852

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 173/836 (20%), Positives = 315/836 (37%), Gaps = 89/836 (10%)

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL--SKLVNLPSGELLIWRACSEIAL 261
           +F T  ++    + +       +  L + ++   F      V             +   L
Sbjct: 9   LFSTALWLPAALASIFLLIIAQFSFLFFHTLAEFFSIIVSFVMFAFAWSTRRFIRNNFLL 68

Query: 262 SSSLIIFLFMYLHW------------NRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309
             +   F    L              N  H          I    +   +  Y P     
Sbjct: 69  FLACGYFWVGALDLLHTLTYRGMQLLNEHHTHDDIAIQFWIGTRYLEALILLYSPFAARQ 128

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL----------------------- 346
             R      +      II   +         I    L                       
Sbjct: 129 KVRGKPIFFLFACISLIITVLVFNDLFPRTFIDGEGLTDFKIYSEYLIDLILLAALISLF 188

Query: 347 ------------IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
                       +    I + M         +    L   +  +  L  + +I + +   
Sbjct: 189 RCGEGIRYREKQLIAASIVMTMLAELAFTFYVSVYGLSNIVGHLFKLASYWLIFNAIVIS 248

Query: 395 YFS---QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGP-- 448
                   + +   R       +   +W+ D+              +  L          
Sbjct: 249 NIKKPYSELLASERRFRRLFENNEVALWNVDLSGVHGELENLRKRGVTNLRQHLYENREI 308

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH-------WMII---- 497
                  IHI D +     L S       R Q E  +R              W       
Sbjct: 309 APALADTIHITDINTASLELFSAETDLDPRAQSEQLMRTLPMSMFVEQLCAIWERQPNIR 368

Query: 498 RIRPMSNSNGDILRYIGIAN----------------DITEQKKSLEGILCNAFQDNLTGI 541
                 N + + L  I                    DIT++K+  + I   A  D LTG+
Sbjct: 369 HEVVFRNVDNEELAAIVSFQIPETILEYANVPVSVVDITQRKQDEQKIWRQANFDQLTGL 428

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR  F D L+  +DL+    + +  ++ ID+D++K++ND LG ++GD +L    +R+ E
Sbjct: 429 ANRNYFTDSLSHTIDLAERQGD-KFALLYIDLDRFKQVNDTLGHSMGDKLLNDAAKRLKE 487

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             +  DI+ARL+G+ F I+L        I      +  S+A P +L   E T++ASIG A
Sbjct: 488 NSRKSDIIARLAGDEFAILLSGTGRPEVIEPLVTKLLNSLAAPYDLSGNETTISASIGIA 547

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSE 719
            +       +++L+ A+ AMY AK  G N+   F   +      +  +++DL  A+EN E
Sbjct: 548 LFPEDGCEVADLLRKADSAMYKAKEDGRNNFHFFTEEIEKEALRKRQLEQDLNRAIENQE 607

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y PI  L D E++  EALI+W+HP  G +S  EF+   EE  +I  +  ++L++  
Sbjct: 608 FELYYQPIETL-DAEVISAEALIRWNHPLRGLVSPIEFIPFMEETSLIAPLGEWILKQAC 666

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           +D + W    ++PP  + +NI+++   +  +   ++ +++ T  S  R+ L  +ES+++ 
Sbjct: 667 QDAMHWDHHCSVPP-KVSVNISTRQFQNQNMPALVKQILTDTGLSADRLTLEITESLMID 725

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897
           + + +   L  LR +G++L++DDFGT  S LSYL   P   +K + S + G    ++  A
Sbjct: 726 DEDSTIHQLNSLRLMGVALSVDDFGTGYSSLSYLKKFPVSYLKIDRSFIQGLPNCQEDSA 785

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++ +I+ MA+++   ++A+ +        L  + C YIQ   ++ P+  +     L
Sbjct: 786 LVEAILSMAESLRLQVVAEGVETSSQANYLASLKCRYIQGYWLSKPIPQHDFCNYL 841


>gi|229051019|ref|ZP_04194567.1| Sensory box protein [Bacillus cereus AH676]
 gi|228722328|gb|EEL73725.1| Sensory box protein [Bacillus cereus AH676]
          Length = 735

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 165/734 (22%), Positives = 321/734 (43%), Gaps = 32/734 (4%)

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             +LI    ++  +  ++I       + +   A +   T   +     LF ++F      
Sbjct: 6   TWILIGYFIAQSLVIYAVISLYRREQYSSSRIALIIGFTIILVYGYIHLFQLNFGMKTSA 65

Query: 308 ASIARITLASIVLYYTYFIIYHGMK-----------GYERAVLLIPAWILIFIWF----- 351
                I  ASI+L     I+Y   K            ++    ++P + +I  +      
Sbjct: 66  EINYLIHTASILLIGLSSILYILDKPMQHETKTKYYRFDYVRFILPYFSIIITFSFIIIQ 125

Query: 352 -----IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                  L   +   +   + Q  +      ++        Q        +  +    +R
Sbjct: 126 PWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHTYEQLTTQLEDEVEEGAFALSKSEQR 185

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V+  ++      +     ++    +        + + +I   D +  + 
Sbjct: 186 YKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDSKDHELLKK 243

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R   L  E R +  +  ++++ I + P    N +++   GIA DIT   +  
Sbjct: 244 ALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARDITTLYEKQ 300

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KKIND LG  
Sbjct: 301 KQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKKINDRLGHD 359

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +R+   L+  DI+AR  G+ F I+L    +       A  +   +  P  
Sbjct: 360 VGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILLPEMYSEKSAIFIAEQILTILNKPFF 419

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +   E+++T SIG A +       +E++KNA++AMY AK  G N    F       +++ 
Sbjct: 420 IQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKEMSIAQNEI 479

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ +L  A++ +E +L Y P +    ++I+G EALI+W HPK G +S ++F+ +AEE 
Sbjct: 480 QFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFEALIRWKHPKLGIVSPAQFIPLAEET 539

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++L     +   W +Q     + + +N++       +L   +  ++ +T   
Sbjct: 540 GFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISKVLEETELK 598

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   P +T+K  
Sbjct: 599 PEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKYPINTLKIA 658

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G   +    AI+ SII ++K +   +IA+ +  E + + L +  CD+IQ   ++ 
Sbjct: 659 REFICGITTSPLEEAIVSSIITLSKQLNLEVIAEGVETEEEWEFLHKQNCDHIQGFFISK 718

Query: 943 PLGFNSILKLLKER 956
           P+    +  LL ++
Sbjct: 719 PVSSKDVWMLLHKK 732


>gi|224368679|ref|YP_002602841.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691395|gb|ACN14678.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 629

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/448 (29%), Positives = 229/448 (51%), Gaps = 15/448 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   AF D+LTG+PNR  F++ LTT LD +    + +  ++ ID+D +K+IND LG ++
Sbjct: 171 RLNQLAFYDSLTGLPNRTLFIENLTTTLDKAHRYKH-KAALLYIDLDNFKRINDTLGHSI 229

Query: 588 GDDVLVSLTRRIGELLKFPDIL---------ARLSGNRFGIILISENNSLKIADFAIAMR 638
           GDD+L + ++R+ + L+  D +         ARL G+ F +IL     +      A+ + 
Sbjct: 230 GDDLLKATSKRLLKCLRTSDTVSRSPAGEMVARLGGDEFTVILPEVTRAEHAGVVALRIA 289

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K +A P++L   ++ VT SIG + +         +LKNA++AMY +K  G N    +  S
Sbjct: 290 KQLAEPLHLGNHQVIVTPSIGISLFPQDGEDIETLLKNADIAMYFSKRMGPNMFSFYEQS 349

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R+ I+  L  A+   E  L Y P   L+  E+ G EAL++W + + GN+   E
Sbjct: 350 MNADALKRMTIENHLRQALGRGEFALHYQPQFDLVTGEVCGAEALLRWHNWELGNVPPIE 409

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAEE  MI AI  +++    R   +W DQ       I +N++       +    +++
Sbjct: 410 FISIAEENGMIVAIGEWVMRTACRQTRTWLDQGLPLQ-RIAVNVSVNQFTHTDFLNMVKS 468

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  +++  +ES+++ N   +  +L  L+K+ I + +DDFGT  S +S L  I
Sbjct: 469 ILEETTLDPQYLEIEITESLLVKNVPETTNILHALKKMNIRIAIDDFGTGYSSMSRLKEI 528

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + + + G    ++  +I+ +II MA+ +   +IA+ +     +  L    C  
Sbjct: 529 PIDCLKIDKTFVDGIAIGKRDQSIITAIIAMAEGMNLRLIAEGVETTGQVDFLRVKQCQE 588

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
           +Q    + PL    +    ++ F L KN
Sbjct: 589 VQGYLFSKPLSTQQVEVFFQKAFSLEKN 616


>gi|260462926|ref|ZP_05811130.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Mesorhizobium opportunistum WSM2075]
 gi|259031320|gb|EEW32592.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Mesorhizobium opportunistum WSM2075]
          Length = 894

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 233/441 (52%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+KK+ + I   A  D LTG+PNR    DRL+  +  +   D    +V+ ID+D +K IN
Sbjct: 454 ERKKAEDQIHFMANHDVLTGLPNRALLQDRLSQAILHAQRYDRW-VSVVFIDLDNFKLIN 512

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
           D LG   GD +L ++  R+   +   D + RL G+ F ++L  +  N   IA+    +R 
Sbjct: 513 DTLGHNAGDRLLKTVAERMVGCISSTDTIVRLGGDEFVLVLSDQPKNVDLIAETLQKLRT 572

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           +IA P+ L +  +  TASIG A++         ++ NA+ AMY AK  G ++ + +    
Sbjct: 573 AIAEPLQLGDHCVRATASIGIATYPKDGKAPESLVANADAAMYRAKAVGRDNFQFYAPEF 632

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++   +R +++E+L  A+  S+  L Y P I L   +IV +EALI+W+HP  G ++   F
Sbjct: 633 NTRAHERFLLQEELRTALARSQFELFYQPQIDLRSVQIVAVEALIRWNHPAHGAMAPVGF 692

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AEE  +I  I  ++L    R   +W+D   + PI + +N++++   +  L E +   
Sbjct: 693 IPTAEETGLIVPIGDWVLHEACRQNKAWQD-LGLEPITVSVNVSARQFSEKNLVERVVHA 751

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S++      ++L  +ES++M +   +   + +L+ +G+ +++DDFGT  S LS L   P
Sbjct: 752 LSESDLEGCYLELELTESLIMQDVGLAVTTMNKLQSLGVQISIDDFGTGYSSLSALKTFP 811

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +    + E   A+  ++I + + ++  +IA+ +  +  +  L +  CD +
Sbjct: 812 IARLKIDKSFIDDVATNEDDQAVASAVISLGQKLKMRVIAEGVETDEQVAFLRKNNCDEM 871

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  H + P+    I +LL+ R
Sbjct: 872 QGYHFSKPVCSREIERLLESR 892



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 14/196 (7%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-A 441
           G+      +     ++ I  +       +    D +W  D     +     +A   G   
Sbjct: 151 GWVSTHEDVTELIATRQIVDERISLQTLIDWVPDYLWVKDSESRFIVANRALAADSGRET 210

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  M G                FR    S +   +  +  E  V        W+     P
Sbjct: 211 TRDMIGLTD--FDLHAPELASKFRADELSVLQTGQPMIDEEEFVVDRSGAGKWLSSTKVP 268

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL----TGIPNRQSFLDRLTTILDL 557
           + N   D+   +GIA+DIT +K+        A    L    TG P      D L  ++ L
Sbjct: 269 LRNDRNDVFGLVGIAHDITGRKREDMLRTGQAEI--LEMIATGAP----LDDVLDRLMRL 322

Query: 558 SATD-DNLRPTVMVID 572
             +    +  +V+++D
Sbjct: 323 MESQLTGILGSVLLLD 338


>gi|114778476|ref|ZP_01453320.1| hypothetical protein SPV1_10019 [Mariprofundus ferrooxydans PV-1]
 gi|114551201|gb|EAU53760.1| hypothetical protein SPV1_10019 [Mariprofundus ferrooxydans PV-1]
          Length = 1217

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 220/452 (48%), Gaps = 5/452 (1%)

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            D+   IG        K++ + +   A  D LTG+PNR    DR   +   +    +    
Sbjct: 757  DLAYGIGALRTRVAHKEAEDRLDFMAHHDALTGMPNRILLHDRFEQVAATARRRGS-NVA 815

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++ +++D +  +NDVLG ++ D +LV +  R+   ++  D ++R  G+ F I+L    + 
Sbjct: 816  MLFLNLDDFHLVNDVLGRSLADHMLVQVVERLHGCIRESDTISREGGDEFIILLGDVGDL 875

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              I      +  + + P  + +  ++VT+SIG + + +     + ++  +E A+  AK  
Sbjct: 876  AAIEIIVQKILDAFSEPFTVDDHIVSVTSSIGISIFPNDGRDFNRLISQSEAALQKAKAA 935

Query: 688  GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G +    F  +++    + + ++  L  A+ N E  + Y P I  ++E ++G EAL++W 
Sbjct: 936  GKDTYNFFTEQMNINALEHMQLQGQLRHAIINQEFRIYYQPQIDTLNERMIGAEALVRWQ 995

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G +   +F+ +AE   +I  +  ++L    R    WR +  MP + + +N+++   
Sbjct: 996  HPQHGLVPPLKFIPLAERSGLIIPLGEWVLNEACRQAQVWRKRNRMPSMVMAVNLSAVQF 1055

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                + E +   + ++      ++L  +ES+++ + E     L RL+ IGI L++DDFGT
Sbjct: 1056 KRGNIVETVIQALERSGLPAENLELELTESILLDDVEVVMETLHRLKDIGIKLSIDDFGT 1115

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S LSYL  +  D +K + S +       +  AI+ +II +   ++ T+IA+ +     
Sbjct: 1116 GYSSLSYLKRLAVDKLKIDQSFVRDMVVDPEDAAIVSAIIQLGHTLQLTVIAEGVETRAQ 1175

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++ L  + C+ +Q    + P+       L ++
Sbjct: 1176 LQLLKSLECNEVQGYLFSRPIPAEDFSGLFEQ 1207



 Score = 92.3 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +         +     R   A   +    W+ D++ + +  + +   I G+  G
Sbjct: 197 MVVARDIDERRRAELELQRSELRLKEAQRVAHLGSWELDLLENSLWWSDENYRIFGVEPG 256

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           S       +L  +H +D+        + V  R      E R+   D    W+  R     
Sbjct: 257 S-VNTYDTFLATVHPDDKVYVDRAYTASVKNRT-PYNIEHRLLLPDGLVKWVNERCETYY 314

Query: 504 NSNGDILRYIGIANDITEQKK 524
           + +G  LR  G   DITE + 
Sbjct: 315 HDDGTPLRSAGTTLDITESRH 335



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILG 439
           L        +  + + +  I    ER +     +   +   D +   +    P  A I G
Sbjct: 321 LRSAGTTLDITESRHSADVIRLSQERFATIFRQAPLGMALIDSLNGTIHELNPRFAEIAG 380

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   M     +W+   H  D       +      R      E R    D    W+ + I
Sbjct: 381 RSVEEM--KAVDWMSITHPEDVQADLDNMALMNAGRIPGFTMEKRYFRPDRSIVWVRMTI 438

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527
            P+    G   +++ +  DITE+K++ E
Sbjct: 439 APLRGEKGSSPQHLCMIEDITERKQADE 466



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 13/209 (6%)

Query: 329 HGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDI---IQPALVGGLVLIVILIG 383
             ++ +   +L +    L +I    +  +      L +D+   +   +   + ++ + +G
Sbjct: 12  GWVQHHFFVLLGVLFAALFWIGESLLHFYFFEPGNLSHDLFPTVYHEMWMRMFIVCMFLG 71

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILG-LA 441
           F      +        I    E+    +  S + +          V      A + G   
Sbjct: 72  FGFFTQRIDDARMRAEIRRGEEQFKALMDVSPEAIAVH--QGGLWVYANDAAAKLFGGKQ 129

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G  R  + ++H +D    +  +           + E R+           +    
Sbjct: 130 PEDIIG--RQVMEFVHPDDHIVVQERMRQLFEGEALTPKLEERLLQPGGTSILAEVYA-L 186

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  +G     + +A DI E++++   + 
Sbjct: 187 RTEFDGKPAVMV-VARDIDERRRAELELQ 214



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 10/157 (6%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA- 441
              +I+ +       + +    +     +  +   V+  D     +      A   GL  
Sbjct: 451 HLCMIEDITERKQADEALRESKDLLRSIIEHAPIRVFWKDAQSRYLGCNSAFAHDAGLTQ 510

Query: 442 SGSMHGPIR---NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + G       W         + +RT     +     +L +E      + +  W+   
Sbjct: 511 PEELVGKSDFDMGWREQ-----AELYRTDDHRVMASGEAKLGFEEPQTTPEGRHIWLRTS 565

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             P+ ++ G++   +GI  DIT++K++   +L  A +
Sbjct: 566 KVPLRSAAGELFGLLGIYEDITQRKEAELELL-QANR 601


>gi|219850345|ref|YP_002464778.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Chloroflexus aggregans DSM 9485]
 gi|219544604|gb|ACL26342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Chloroflexus aggregans DSM 9485]
          Length = 1101

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 218/443 (49%), Gaps = 10/443 (2%)

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I +       +      D LTG+PNR    +R+   L  +    ++   ++ ID+D +K+
Sbjct: 650  IADHANLNAQLNYQVRYDTLTGLPNRNLLQERIDLALRDARERRHI-VALLFIDLDGFKQ 708

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND LG  +GD  L  +++      +  D L R+ G+ F +++    ++      A  + 
Sbjct: 709  VNDSLGHPIGDRFLKHVSQAFAACARPQDTLGRMGGDEFLLLMPDLPDARLADIAAQRLL 768

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFR 696
             ++  P      E+ +TASIG + +    +    +LKNA+ AM+ AK   R G       
Sbjct: 769  DALQTPFLHDGHELRLTASIGISLFPRDGVDVVTLLKNADSAMHRAKELKRSGFLHYRPE 828

Query: 697  VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             S     R+ ++  L  A+E  EL + Y P   L+ E I G+EAL++W HP+ G I+  E
Sbjct: 829  HSRRAHTRLALEAQLRRALERHELAVYYQPQYDLVSEGITGVEALVRWHHPQRGPIAPGE 888

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ IAEE  +I  I  ++L    R  ++W+     P + I +N++++ LL  E    + A
Sbjct: 889  FVPIAEESDLIIEIGSWVLREACRQAMAWQQA-GYPLLRISVNVSARQLLRPEFVAEVAA 947

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++  T      ++L  +E V++ +P  +   + +LR +G+ + LDDFGT  S L+YL  +
Sbjct: 948  VLHATGLPAQYLELEITEGVMLDDPIYAARQIDQLRHMGVRIALDDFGTGYSSLAYLRQL 1007

Query: 877  PFDTVKFNGSLMTGSTE------KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
              D +K + + +    E         A+LR+II +A ++   ++A+ +  +     L  M
Sbjct: 1008 RLDALKIDQAFVRAIDEQQNVVTNSRALLRAIINLAHSLGLAVVAEGVETDEQRAALLSM 1067

Query: 931  GCDYIQDSHVASPLGFNSILKLL 953
            GCD +Q   ++ PL  + +  +L
Sbjct: 1068 GCDVLQGYLISQPLPADEVWPML 1090



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 23/164 (14%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPI 449
                 ER  L    V+ + D V   D                  + + G A+  + G  
Sbjct: 380 ARKQAEERLRLLESVVVHTNDAVIILDAEPLHAPGPFIRYANAACSQLTGYATNELIGRS 439

Query: 450 RNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              L  +H    D      + ++    +  R    +       +  W+ + + P+++  G
Sbjct: 440 ---LRILHGPATDSVTLNRLWEAMERQQPARFALLY--YTRAGKPIWVDLSLSPVTDEYG 494

Query: 508 DILRYIGIANDITEQKKS----LEGILCNAF---QDNLTGIPNR 544
               +I +  DI+ QK +     +     A       +T + NR
Sbjct: 495 KATHFIALHRDISAQKLAAFLEHDRSAILALLLQHAPVTAMLNR 538



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 42/134 (31%), Gaps = 4/134 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                   ++  +    + V   D     +      A +  +   ++ G   + L     
Sbjct: 262 EAERQLNLRARVLSQINEAVIVTDRSGAIIYLNEMAAYLYAVQPEAIIGQPLSRLFTAEP 321

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 +  + SF        + E   R  D +   + +RI P+ +        + +  D
Sbjct: 322 LPYQPVQPSVQSFSTG----WRGELIHRLPDGRAMMVEVRIDPLYHDELANGGALIVVRD 377

Query: 519 ITEQKKSLEGILCN 532
           IT +K++ E +   
Sbjct: 378 ITARKQAEERLRLL 391



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 3/112 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    +IV      +     +P +  +LG     +    R+   ++H++D D  +  L  
Sbjct: 26  LECIVEIVIILAPDQTIRFASPALTNLLGHPQALVVN--RSLYDFVHVDDHDRLQRHLAQ 83

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               +  R     R++ A+  ++   +R         ++   I    D+T  
Sbjct: 84  LADSQCRRQPIRVRLQHAEGGWYIFELRC-CNRQHQPEVGGIILSGYDVTAL 134



 Score = 44.6 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 7/148 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGL-ASGSMH 446
            V A       + ++  R    +  +  ++    +    +    P  A I G+       
Sbjct: 130 DVTALLAADYALRNNEFRYRQLLELAPLLIIISTLPEGIIRYCNPAGARIFGVDDPAEPV 189

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                   ++   D D  R      +   +      + + A D     + ++   +    
Sbjct: 190 NQPLT--EFLSGEDHDLMRKR-RQALRNGQLLQPARYHIYARDQIVRVIEVQGTLIEGP- 245

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G+I   + I  D+T++ ++   +   A 
Sbjct: 246 GEIQ-VLTIGYDVTDRVEAERQLNLRAR 272


>gi|209883884|ref|YP_002287741.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209872080|gb|ACI91876.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 763

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 146/708 (20%), Positives = 293/708 (41%), Gaps = 52/708 (7%)

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSF-YYPMVTASIARITLASIVLYYTYFIIYH 329
            Y+   RW  +    + + +A ++    ++F         +   +++   L         
Sbjct: 85  NYVETRRWEKRYILGSGAFVAILSFWCFLTFALTSDPAVHLISFSVSLAYLVG------V 138

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI---LIGFTV 386
             + +    L+            GL M     + NDI    L   L+   +    I   +
Sbjct: 139 TGRNFSSDQLVT-----TQTVCAGLPMTAGLIIQNDIYYAFLASLLIPFFLSLRFISTRL 193

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG--- 443
            + +      S+ I    +R   A+      +  +D  R  + T      +LGL S    
Sbjct: 194 RKTLFDAVVASREIQLLAKRFDTALNNMPHGLCMFDANRRLLVTNHRFIEMLGLGSNLNG 253

Query: 444 -----SMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
                 +       N L ++  +  +      +     +R  L  E       +      
Sbjct: 254 NLCIRELLQHITASNQLRHLSPD--EFASQFEERIASRQRQTLALEV------DANKTFE 305

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +  +PM N       ++ ++ DITE++++ E I   A  D LTG+PNR    D    +  
Sbjct: 306 LTFQPMENG-----GHVVLSEDITERQQTAERIEHLARYDALTGLPNRTHLEDEFERLTA 360

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      ++ ID+D++KK+ND LG   GD +L  +  R+  +L    I+AR  G+ 
Sbjct: 361 Q----GMQSCALLFIDLDQFKKVNDTLGHPAGDALLCQVANRLRRILNTTGIVARFGGDE 416

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++L  +++  + A  A  + ++++   ++   +I V AS+G         T  ++LK 
Sbjct: 417 FVVLLPIQHSRDEAAQLAGHIIRTLSEIYDVNGHQIMVGASVGVGVMPEDGRTFEQILKC 476

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMYHAK  G      F  +       R  ++ D+  A+  +E  + + PI+ +    
Sbjct: 477 ADMAMYHAKADGRGTYSFFEHTMDEKAQTRRALELDIRNAMTRNEFDIYFQPIMDIKTGR 536

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            V  EAL++W H + G +  +EF+ + EE+ +I  +  ++L +   +  +W         
Sbjct: 537 TVTCEALLRWPHTERGMVPPNEFVSVVEEMGLITELGTWVLHKACSECTTWPKNIG---- 592

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+++     + + E +   ++ T  S  R+++  +ESV++ N    +  L  +RK 
Sbjct: 593 -VAVNVSAIQFRRSNVSELIAECLASTGLSADRLEIEITESVLLENTAEIQKALNDIRKQ 651

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ ++LDDFGT  S LSYL   P   +K + S + G     + + +L  I  ++ ++  +
Sbjct: 652 GVRISLDDFGTGYSSLSYLREFPLSKIKIDRSFLAGIENDPRSMKLLYGIARVSADLGMS 711

Query: 913 IIAKDIYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKERFPL 959
           ++ + +     +  L +      +Q    +  +G     K LK+   L
Sbjct: 712 VVVEGVETHRQLTLLLQEPSITQVQGYLFSGAIGGVDTHKRLKDERAL 759


>gi|54297430|ref|YP_123799.1| hypothetical protein lpp1475 [Legionella pneumophila str. Paris]
 gi|53751215|emb|CAH12626.1| hypothetical protein lpp1475 [Legionella pneumophila str. Paris]
          Length = 842

 Score =  479 bits (1233), Expect = e-132,   Method: Composition-based stats.
 Identities = 149/799 (18%), Positives = 332/799 (41%), Gaps = 47/799 (5%)

Query: 193 GIIIGVASLLAIFLTIFYMVN----RSSMLIPTFAMAWVVLGYISID-----------FG 237
            I+   A          ++      +S++++         +  +              F 
Sbjct: 54  AIVYNTALCFIALSFSIFLFLNWHYKSAIILSLAVFILSGIALVQHAYSINLGIDEIFFH 113

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
               + N   G +    A   + ++++LI+    +      +  +       + C+A+LF
Sbjct: 114 HYQSIQNAYPGRMAANTAFCFLLIATALILM--SFTGNQSLNNSLAGALSLLVFCLAVLF 171

Query: 298 CMSFYYPMVTASIAR--ITLASIVLYYTYFIIYHGMKGY-----------ERAVLLIPAW 344
              ++  +  A        ++         +    M  Y             A+  + ++
Sbjct: 172 ISGYFSDIQQAYKWGNKTPMSINTGIGFLLLSLAMMSLYWHNNTIHQLNSSIAMPYLSSF 231

Query: 345 ILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            ++  + +  +    K  + ++   +        +L  IL G  +    LA    +   +
Sbjct: 232 CIMLTFSLLSFEIFKKEKELNLSTNLSLTTFALGILFSILFGLIIRLWQLAKISTATAKY 291

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHIN 459
           +  E  +  +  + D +   D   + +        +       +       +    I+  
Sbjct: 292 ALSE-VNATLESTADGILVVDRTGNVMNYNKRFLNMW-YQKERLLKTINYHDIKLMINKQ 349

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             +    I       +    Q  F ++  +N ++      +P+   + +I+  +    DI
Sbjct: 350 LINRREAIQRINKILKNPDYQQAFELKLKNNTYY--HCYTQPLKLDD-EIIGRVWSFRDI 406

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  K+    +   +  D LT +PN+   ++ L   +  + +   +   V ++D+D++ +I
Sbjct: 407 TIPKRLEMELSHQSTHDTLTNLPNKVLAINILGYAMKTAVSSKKI-IGVYLLDLDRFTQI 465

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G + GD+++ S+++R+ + +    +L RLSG++F I++ S NNS ++      +  
Sbjct: 466 NDVFGHSKGDEIIKSVSKRLIDCMPMNHVLGRLSGDQF-IVIASINNSKEVVTGVTRLMS 524

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P+ +    I ++ S+G + +     T   +L  A++A+   K  G N  + +    
Sbjct: 525 AFHEPVKMNGHSIKMSCSVGISFYPKDGDTVDTLLSKADIALSRTKIEGRNSFQFYTQEM 584

Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  ++++ +L  AV  +E  L Y PI++L    ++G EALI+W+HP  G I   +F
Sbjct: 585 HSYTLEHILLESELRNAVAKNEFVLYYQPILKLSTLSVIGFEALIRWNHPGKGLILPDKF 644

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE+ +I  I  ++   + + I +W+ Q     + I INI+ K        + +  L
Sbjct: 645 ISLAEEIGVIGEIGDWVFVTVCKQIRAWQLQGFN-NLKISINISPKQFKFRHFPQKVNEL 703

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+    P  I+L  +E++++        +L  L+ +GI +++DDFGT  S LSYL  +P
Sbjct: 704 LSEFQVKPEFIELELTENILIDKSADIIDILSELKGMGIQISIDDFGTGYSCLSYLKDLP 763

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K +   +      +    ++++II MAK+   ++IA+ I  + ++  L  +GC Y 
Sbjct: 764 INVLKIDQIFVKDLKNNQSNQTLIKAIIAMAKSFNLSLIAEGIQNKHELVFLQNLGCHYG 823

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  +   P+      +LL+
Sbjct: 824 QGYYFYHPMPPEKCTQLLQ 842


>gi|89902652|ref|YP_525123.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
 gi|89347389|gb|ABD71592.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodoferax ferrireducens T118]
          Length = 853

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 134/569 (23%), Positives = 252/569 (44%), Gaps = 15/569 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                  ++ + +  +R +  +      ++  D+          +  +       + G  
Sbjct: 290 RRQVADKTRHLRASEDRLATILNSVDAYIYIKDMELRYQYANRKVCELFDRPLAQVVGST 349

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGD 508
            +   +      +  R      +     R++ +   R+ D       + I+ P+   +G 
Sbjct: 350 DS--EFFDATTVERLRINDKRVIDN-GERVEADEVSRSLDGSREQTYLSIKLPLRQPDGS 406

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I    GI+ DITE K+S + I   AF D LT +PNR+  ++RL   L  +         +
Sbjct: 407 IYALCGISTDITEHKRSEDAIHQLAFYDPLTLLPNRRFLMERLQQTLKANERQQQC-GAL 465

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS----- 623
           + ID+D +K +ND LG A+GD++L  +  R+    +  D LAR   + F ++L       
Sbjct: 466 LFIDVDNFKDLNDTLGHAMGDELLRQMAVRLSTCTRAEDTLARQGSDEFVLLLCDLSPDL 525

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +    +    A  + + IA P  L  R    T SIG A +  +  +  E+ K A+LAMY 
Sbjct: 526 DAALEQTRHVAQKILQHIAEPYLLETRHYQSTVSIGIAMFGDTPTSRDELFKQADLAMYR 585

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N +  F  +          I+ DL  A+  SE  L Y P + + D +  G+EAL
Sbjct: 586 AKAEGRNALCFFNPAMQAQVTARTAIEADLHQALARSEFVLYYQPQVNI-DGQQFGVEAL 644

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +   EF+ IAE   +I  +  ++L    R +++W          I +N++
Sbjct: 645 VRWQHPQRGLVPPLEFIPIAESTGLILPLGRWILSTACRQLVAWAASPEQAHWSIAVNVS 704

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++    ++  + ++ ++  T  +P R++L  +ES+++ + E     +  L+ +G+  +LD
Sbjct: 705 ARQFRQSDFVQTVEQVLRDTGANPQRLELELTESLLVDDVEVVIARMSALKALGVRFSLD 764

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L  +P D +K + S +       +   I+++I+ +   +   +IA+ + 
Sbjct: 765 DFGTGYSSLSMLKRLPLDQLKIDRSFVRDLRHDPQDANIVKAIVTLGFAMNLQVIAEGVE 824

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                  L  +GC + Q      P    +
Sbjct: 825 TAEQRDALVNLGCTHFQGYLFGRPAPAPA 853


>gi|299530172|ref|ZP_07043598.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298721829|gb|EFI62760.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 829

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 120/577 (20%), Positives = 257/577 (44%), Gaps = 23/577 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL------GLAS 442
           +            ++    +     S D ++  D     V   P    +L      GLA+
Sbjct: 239 YSYRDITVESSSATELRLAARVFESSLDGIFIADANGVIVQVNPAGGQLLHGKAVLGLAA 298

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++       +  +     +      D          +    ++ ++ Q   + +    +
Sbjct: 299 WTLFESEGGPVSDL----LELAAARWDV-----GSFWEGNLWLKQSEGQRCAVWLSWVAL 349

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +++ IG   D+T Q+ + + I   A+ D LTG+PNR S    +   +  +A   
Sbjct: 350 RDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI-TAARFT 408

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               +++ +D+D++K IND LG   GD VL  + +R+  LL+  D+L R  G+ F + L 
Sbjct: 409 QQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLSGLLRPADVLCRQGGDEFVLYLH 468

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                   +  A  +   +  P  L     +V  SIG A + +  +T  E+++ A++AMY
Sbjct: 469 DCTG-EGASAVAARILDEMRQPFMLDGLGFSVQCSIGAAQFPADGLTLDELIRQADIAMY 527

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K RG  +   ++         R+ ++  +  A++   + + + P + +    IV  EA
Sbjct: 528 RVKERGRGNFSFYQPQMSAGLLSRMKLEHAMRQALDKGHMAVHFQPQVHIRSGRIVAAEA 587

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W  P+ G IS + F+ +AEE   + A++ ++LE+  ++   W       P+ + +N+
Sbjct: 588 LLRWTDPELGVISPAAFIPLAEESGYVVALDAWVLEQSVQEAARWLAM--DMPVKVSVNV 645

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +    +  + ++ ++  +      ++L  +ES+++   +   L + ++ ++G+ L +
Sbjct: 646 SALEFRQPDFVDRLKYVLEASGLPAQWLELELTESILLQEAQEMALRVHQIAELGVGLVI 705

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P   +K + S + G        AI+ +II M + +   ++A+ +
Sbjct: 706 DDFGTGYSSLAYLKKLPISKIKIDQSFVRGLPHDAGDKAIVGAIISMGQALGVELVAEGV 765

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +   + + ++  DY Q    +  L      K L++
Sbjct: 766 ETQEQCQAIEQLQGDYFQGYLCSPALPAEQFRKRLEQ 802


>gi|264677957|ref|YP_003277864.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262208470|gb|ACY32568.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 829

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 120/577 (20%), Positives = 257/577 (44%), Gaps = 23/577 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL------GLAS 442
           +            ++    +     S D ++  D     V   P    +L      GLA+
Sbjct: 239 YSYRDITVESSSATELRLAARVFESSLDGIFIADANGVIVQVNPAGGQLLHGKAVLGLAA 298

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++       +  +     +      D          +    ++ ++ Q   + +    +
Sbjct: 299 WTLFESEGGPVSDL----LELAAARWDV-----GSFWEGNLWLKQSEGQRCAVWLSWVAL 349

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +++ IG   D+T Q+ + + I   A+ D LTG+PNR S    +   +  +A   
Sbjct: 350 RDGYGRLVQSIGFMRDMTMQRSAQKQIEQLAYSDALTGLPNRLSLSRHVQAAI-TAARFT 408

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               +++ +D+D++K IND LG   GD VL  + +R+  LL+  D+L R  G+ F + L 
Sbjct: 409 QQPFSILFLDLDRFKIINDSLGHDFGDRVLKLVAQRLSGLLRPADVLCRQGGDEFVLYLH 468

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                   +  A  +   +  P  L     +V  SIG A + +  +T  E+++ A++AMY
Sbjct: 469 DCTG-EGASAVAARILDEMRQPFMLDGLGFSVQCSIGAAQFPADGLTLDELIRQADIAMY 527

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K RG  +   ++         R+ ++  +  A++   + + + P + +    IV  EA
Sbjct: 528 RVKERGRGNFSFYQPQMSAGLLSRMKLEHAMRQALDKGHMAVHFQPQVHIRSGRIVAAEA 587

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W  P+ G IS + F+ +AEE   + A++ ++LE+  ++   W       P+ + +N+
Sbjct: 588 LLRWTDPELGVISPAAFIPLAEESGYVVALDAWVLEQSVQEAARWLAM--DMPVKVSVNV 645

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ +    +  + ++ ++  +      ++L  +ES+++   +   L + ++ ++G+ L +
Sbjct: 646 SALEFRQPDFVDRLKYVLEASGLPAQWLELELTESILLQEAQEMALRVHQIAELGVGLVI 705

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P   +K + S + G        AI+ +II M + +   ++A+ +
Sbjct: 706 DDFGTGYSSLAYLKKLPISKIKIDQSFVRGLPHDAGDKAIVGAIISMGQALGVELVAEGV 765

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +   + + ++  DY Q    +  L      K L++
Sbjct: 766 ETQEQCQAIEQLQGDYFQGYLCSPALPAEQFRKRLEQ 802


>gi|254250789|ref|ZP_04944108.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|124879923|gb|EAY67279.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 693

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 154/658 (23%), Positives = 286/658 (43%), Gaps = 17/658 (2%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
            + ++ +  A +    + S+              GY+ A+ L+   I I      LW+  
Sbjct: 39  AARWWLVGGACVMGTGIWSMHFVGMLAFALPIPLGYDPAITLLSLLIAIVCSTGALWLVC 98

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              L    +    +     +  +    +    ++ G     +       ++AV+ SG ++
Sbjct: 99  RDTLKWRRLCGGAMLMGAGVAGMHYTGMASMRMSPGIGYDPLLVCLS-VAIAVVASGAVL 157

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W   I R           +L L S  + G     +  +H       R  L S  G    R
Sbjct: 158 WIVFIRR----ANSSRVRLLNLGSAVLMGAA---IAGMHYTGMAAARFPLGSICGAAGSR 210

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +   +           ++     +S  +  +     +    T    + + +   A  DNL
Sbjct: 211 MDAGWLALVIIVATLAILAIALIVSILDLRLEARTAVLA--TSLAAANQELTYLALHDNL 268

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR    DR+   +  +  +      +M +D+D +K +ND  G  VGD +LV + RR
Sbjct: 269 TKLPNRVLLEDRIDQAIQGADREHG-SFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARR 327

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           IG  L+  D +ARL G+ F  + ++ +     AD A  +   I  P  + E E+ V+ASI
Sbjct: 328 IGANLRSQDTIARLGGDEFV-LAVAVDEPADAADVADKILAVIRKPFRVSEHELRVSASI 386

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716
           G A +  +     +++ NA+ AMYHAK  G N    F  S   +  + + I ++L LA+E
Sbjct: 387 GIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMNANVREHLKIVQELRLALE 446

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L Y P   +    I+G+EAL++W HP  G IS  +F+ IAE+  +I  I  ++L+
Sbjct: 447 RRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFIPIAEKTGLIVPIGEWVLD 506

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  W D        + +N++        L   ++A + +    P  + L  +ES 
Sbjct: 507 EACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITEST 565

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            M + + S  +L +L  +G+ +++DDFGT  S L YL  +P   +K +   +       +
Sbjct: 566 AMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFIRDLEHDTE 625

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             AI+ +I+ + + ++  I+A+ +      + LT++GC+ +Q   +  P+  +  +++
Sbjct: 626 DAAIISAIVALGRALDLKIVAEGVETTAQQQFLTQLGCNSLQGFLLGRPMPADHFVEM 683


>gi|92112962|ref|YP_572890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
 gi|91796052|gb|ABE58191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
          Length = 831

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 163/790 (20%), Positives = 328/790 (41%), Gaps = 31/790 (3%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
            L    ++G+      F  +  +     M      +  + L    +  G+  +++ +P  
Sbjct: 57  LLAGAAMMGLGVWSMHFTGMLALRLPLPMH-YDAGLTLLSLVPAMLGSGYALRIMAMPRP 115

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWN-----RWHAKVGYITFSGIACIAILFCMSFYY 303
            L        +      I+              R+   +  ++      +     +    
Sbjct: 116 RLSYSLVGGVVLGMGIGIMHYLGMEAIRMPVEVRYDIGLFVMSLVVAIGLGAAAMLIHRR 175

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKG-YERAVLLIPAWILIFIWFIGLWMAITKRL 362
                 + R+    + +     +   GM      A   +P                    
Sbjct: 176 YARQRRLNRLDHRLVSIAACISLAISGMHYTAMSATYYLPT---------PTPAPQHAVT 226

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
               +  ++ G ++L++++ G  V        +  Q +    E+    +    D    +D
Sbjct: 227 PASWLGVSVSGIVILLLMVAGLWVFIDRRLQRHQRQSVM-SREQLMEVIAAINDAFLLFD 285

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                V +    +T+ G     +     + L + H + R  +R I    V +  G  Q E
Sbjct: 286 HRGRIVLSNRTFSTLTGYTPDEIRNQPLSILEHSHESART-YRDIQRCVVEH--GHWQGE 342

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              R  + +   + + +  +  S G++  ++   +D++  +++   I   A  D LTG+P
Sbjct: 343 IEARRKNGEAFPVRVSVNRVDYSQGNVHHFVATLHDLSAHREAQAKIHRLAHHDTLTGLP 402

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ+   RL   L  +         ++++DID +K +ND  G AVGD +L+ + RR+   
Sbjct: 403 NRQTLYARLD-ALQAACRAQGPGGALIMLDIDNFKALNDSRGNAVGDTLLLHVARRLKRF 461

Query: 603 LKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTAS 657
            +    LARL GN F +I+    ++       ++     +R++I    +L +   T T S
Sbjct: 462 ARHEHDLARLGGNEFALIVTDLPSAHDDADEALSRHLDTVRQAIGGVYDLDDFTHTTTHS 521

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           +G   +    +++ E++K A LAM HAK  GGN   +FR    ++ +V   ++ +L  A+
Sbjct: 522 LGGVRFGDGDVSADELVKRASLAMSHAKQEGGNASRAFRPEMEQALQVRVCMEAELRQAL 581

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              +L L Y P +      I+G EALI+W HP+ G IS  +F+ +AEE  +I+ I  ++L
Sbjct: 582 ATDQLQLFYQPQVDTR-GTIIGAEALIRWQHPERGMISPGDFIPLAEETGLIEQIGGWVL 640

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   + + +W        + + IN++ +     +    +   I++      R+ L  +ES
Sbjct: 641 DTACQQLATWSRHDATSHLQLSINVSVRQFQQADFVSRVLDTIARHRAPAERLTLELTES 700

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STE 893
           +++ N E     + RL++ G++ +LDDFGT  S L+YL  +PF+T+K + S +       
Sbjct: 701 LLLANVEGVIDKMTRLKQHGLNFSLDDFGTGYSSLAYLKRLPFNTLKIDVSFVRDVLVDA 760

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+++I+ +A +++   +A+ +  +   + L R+GC Y Q  +   P   +     L
Sbjct: 761 NDAAIVKTIVALADSLQLKSVAEGVEMQAQREFLERLGCHYHQGYYFGRPSPIDVFEAHL 820

Query: 954 KERFPLVKNT 963
             +      T
Sbjct: 821 ATQASASATT 830


>gi|150017350|ref|YP_001309604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149903815|gb|ABR34648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 784

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 162/809 (20%), Positives = 324/809 (40%), Gaps = 68/809 (8%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
               +  ++  I I        +  +       ++    F     VLGY   +  +L   
Sbjct: 3   KKSKTNQIFIYICICFGLWSGGYAMML---TSDNINTAFFWRNSSVLGYCFFNGLWLYFA 59

Query: 243 VNLPSGELLIWRACSEIALSS-SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
             L + +   + +  +      + ++F+               I     A     +    
Sbjct: 60  YLLNNEDDFEYISIIKFLAYVPTTLLFIGNI------------IVEPYSAMTKEYYGWID 107

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
             P +   I  I  A ++ +    ++Y   K  ++  +     I++    +    +I   
Sbjct: 108 VAPELFPQILYIIWAIVIDFAGVIVLYLRGKYSKKNRVKKQNKIILITCTV----SIIIG 163

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWD 420
           +  D I P L   +    +L G   +  +       + + +  +           + ++ 
Sbjct: 164 IITDFILPLLGVTIFPSAVLTGTIALGGIYYAINKHRLMLTTPKYISEYIFNTVNEPIFI 223

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            +             ++       + G I + L        DN    L S       +  
Sbjct: 224 LNENFIIKNCNDASLSVTNYKIEEVEGKIFSEL-------LDNVDFDLSSITKNSCAK-N 275

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK----------------- 523
            E  +                + +   DIL  + + +DI+E+K                 
Sbjct: 276 IEVNLETKYGNNITCEFSGTIIYDEYSDILGILILLHDISERKKILEMEKNCTLKLEEAN 335

Query: 524 -----------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                      ++ E +    + D LT +PNR+  L+ L  +L++     N    ++ ID
Sbjct: 336 MMLKNQIQDKIRAEEKLRHFVYYDPLTELPNRKMMLENLNMLLEI----KNNSFAILFID 391

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K IND  G  VGD VL ++   +  ++   DI++R+ G+ F II     ++  + +
Sbjct: 392 LDGFKSINDNYGHQVGDKVLKNVADTLKGIISNVDIISRIGGDEFVIITTDIKSTTYVKE 451

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  ++K++ +P    E ++ V ASIG + +      +  +++ A++AMY  K +GG   
Sbjct: 452 IAERIQKALKIPFIYNEEDLCVGASIGISIFPEHGKDADTLIRKADVAMYEVKKKGGYDY 511

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +  +++    +++ IKE L  A+EN+E  + Y PII L   +++  EALI+W      
Sbjct: 512 ALYSSKINDEFLNKMNIKEKLNKAMENNEFVIYYQPIISLRSMKVLYSEALIRWKQAD-K 570

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS  EF+ IA+ +  I +I+ ++LE   +    W +        I +N++   L  +E 
Sbjct: 571 IISPIEFIPIAKSVGEIISIDNWVLENACKQCEIWHELGGSE-FSISVNVSYSQLKQSEF 629

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ +++   +    + +  +E   M +      +L RLRKIG+ ++LDDFGT  S L
Sbjct: 630 IPMVENILNHYSFPARCLNMEITEDEAMEDSGTIIGILERLRKIGVRVSLDDFGTGYSSL 689

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+  +P D +K + SL+    +   +  I+RSII +  ++   IIA+ I  +   + L 
Sbjct: 690 SYVNRLPIDMIKIDKSLVWNLEKDYKSVMIVRSIITLGHSLNLKIIAEGIETQEQFRILN 749

Query: 929 RMGCDYIQDSHVASPLGFNSIL-KLLKER 956
            + CDYIQ   +  P+       + +K+ 
Sbjct: 750 ELNCDYIQGYLIGKPMEALEFEHRFIKKE 778


>gi|228944301|ref|ZP_04106675.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228815381|gb|EEM61628.1| Sensory box/GGDEF [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 689

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 248/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEITEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|331268301|ref|YP_004394793.1| nitrogen fixation positive activator [Clostridium botulinum
           BKT015925]
 gi|329124851|gb|AEB74796.1| nitrogen fixation positive activator, putative [Clostridium
           botulinum BKT015925]
          Length = 597

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 129/552 (23%), Positives = 258/552 (46%), Gaps = 11/552 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S  +  S + +   D     +       +I   +   +       +  I  ++ +  + 
Sbjct: 42  FSQIIEYSKESIVVLDKDLTVLYVNNTFLSIGQYSKQEVINKK---IENISESNLNICKY 98

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I+ +     +G    E    ++  + H++  R++ + +   D   YI I  DIT+ K+S 
Sbjct: 99  IMKNIKN--KGMWTGEVEYISSLGKTHFLSARVKVIRDKMKDKKYYIAIFEDITDLKRSQ 156

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +      D LTG+  +  F+ +L   +       N    V+ + +D +K +N+ +G  
Sbjct: 157 KSVNYLKEYDVLTGLCQKWVFIKKLKRRILEL-EGKNKLIGVITLGLDDFKFVNEAMGHV 215

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L +++ R+   +    IL+R++G+ FGII+    +  +I      + +       
Sbjct: 216 YGDKLLKNISIRLKS-IDKTYILSRITGDEFGIIIPQCESVREIEYIVQRINEIFLKSFI 274

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + ++E+ +TASIG + +    + +++++ NA  A  + K  G N+ + +     +S    
Sbjct: 275 IKQQEVFITASIGISIYPIDALNANDLIMNATSAQNYVKKNGKNNYKIYSKDINKSAYNR 334

Query: 707 IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           I+    L  AV+N E  L Y P   L    ++G+EALI+W+HP  G I   +F+ +AE+ 
Sbjct: 335 IEMIAMLRHAVDNKEFILHYQPQANLSSGNVIGVEALIRWNHPSIGLIYPDKFIPLAEKT 394

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++    R    W D      + + IN+++    + +L + ++  + K    
Sbjct: 395 GLIIPMGRWVISEACRQNKLWHDA-GFKDLIVSINLSALQFEEKDLVDTIKNELIKANLP 453

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +++  +E ++M N E++   L  L+ IG+ + +DDFGT  S LSYL   P D +K +
Sbjct: 454 PKYLEIEITEGILMENTEQAIRTLCELKDIGVKIAIDDFGTGYSSLSYLKEFPIDRLKID 513

Query: 885 GSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S ++G   E   AI   II +AK++   ++A+       I  L    CD IQ  + + P
Sbjct: 514 RSFISGIPREDNGAIANIIIELAKSLNLKVVAEGTETREHITFLKERNCDTIQGYYFSKP 573

Query: 944 LGFNSILKLLKE 955
           +  +   ++LK+
Sbjct: 574 VSKDIFTEILKQ 585


>gi|77460773|ref|YP_350280.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384776|gb|ABA76289.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 624

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 238/495 (48%), Gaps = 14/495 (2%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D  +  ++     E R  A    + W +        +    L+ + +   I  +   L  
Sbjct: 135 DQLLILKKPFDTLEIRQMANALTWKWQL--------AQDAALKMLNLEQTIEARVHELLK 186

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +      D+LTG+PN     DRLT  L      D  +  VM + +D++K+IN+ LG   G
Sbjct: 187 VSRLLQYDSLTGLPNSTLLGDRLTQSLAACRRHDK-QLVVMFLGLDRFKRINNALGHPAG 245

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  + +++   ++  D + R   + F ++L   N+  +    A  +  +I  P  ++
Sbjct: 246 DEMLKRVGQQLLACVRESDSVFRYGSDEFVVMLSDINHPQQSRSIAEKLLSAIRAPQTIV 305

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
             +++VTAS+G + +    + + E++K AE AM  AK  G N +  F   ++    ++  
Sbjct: 306 GHDVSVTASLGISLYPDDGLEAIELIKKAETAMRSAKENGPNEIGFFIEAMNQRAREQQS 365

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  +  A++  E  L Y P I L    +VG EAL++W  P  G +  SEF+ +AE+  +
Sbjct: 366 IESGIRQALQRHEFVLHYQPKIELASGRVVGAEALVRWQKPGHGWVYPSEFIPVAEDSGL 425

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++L    R    W+     PPI + +N ++ D       EG++ ++++T   P 
Sbjct: 426 IVPLSKWVLAEACRQTREWQQAGL-PPIRMSVNTSAIDFRQRHFVEGIEQVLAQTGLDPR 484

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +E V+M N + +   L RL+ +G+ L +DDFGT  S LSYL   P D +K + S
Sbjct: 485 LLELEITEGVLMQNVDATMSALNRLKALGVRLAIDDFGTGYSSLSYLRRFPIDVLKIDQS 544

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G +      A++ +II + K++   +IA+ +    ++  L    C+  Q  + +  L
Sbjct: 545 FIRGLSHDSSDAALVGAIISLGKSLNLNVIAEGVETAQELAFLKDHHCEEGQGYYFSKAL 604

Query: 945 GFNSILKLLKERFPL 959
             ++  +LL    P 
Sbjct: 605 PVDAFARLLASAQPG 619


>gi|326389046|ref|ZP_08210628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206646|gb|EGD57481.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 910

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 142/571 (24%), Positives = 257/571 (45%), Gaps = 29/571 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I+ +       + +         A+      +  +D  +  V     +  +  L  G
Sbjct: 343 IVIIRDMTRAREDQERLSETRAHLDTALDNMYQGLALFDASQRLVLHNDRLCELWSLQEG 402

Query: 444 SMHGP------IRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMI 496
            +         +   +   H++D    RT L+S +     G    E R          + 
Sbjct: 403 VLRPGMTIAEIVPVMMARAHVDDPGRTRTALESAMSPVAAGTTVIECRA------DFIVS 456

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +  RP+         ++    DITE++++   I+  A  D LTG+ NR  F ++    +D
Sbjct: 457 VATRPLVQG-----GWVSTFEDITERRRNEARIVHLAMHDPLTGLSNRAHFAEQCAREMD 511

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            SA        +++ID++ +K IND  G A GD  +V +  R+       + +ARL G+ 
Sbjct: 512 YSARLGQ-NFALVMIDLNGFKGINDRWGHAEGDRAIVEIGHRLQACCVESETVARLGGDE 570

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F        +   ++DF   +R      +      I + AS+G A + S       ++ N
Sbjct: 571 FAA-GKCFASQADLSDFVDRLRACFDDDLAGEGHRIPIGASLGVAVFPSDGADLETLMNN 629

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LAMY AK+  G H+  ++  +      R  +  +L  A+E  E +LVY P   +    
Sbjct: 630 ADLAMYRAKNGRGEHICYYQPGMDENARTRRQLATELRHAIERDEFHLVYQPQHAVQSGA 689

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           ++G EAL++W HPK G +S  EF+ IAEE   I AI  ++L   AR+   W      P +
Sbjct: 690 VIGYEALLRWVHPKRGLVSPDEFIPIAEETGSIYAIGEWVLREAAREAAQW-----DPDL 744

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++   L   +L + +  ++      P R++L  +ES ++G+  R+  LL +++ +
Sbjct: 745 KIAVNLSPVQLQQADLVQTITDILVDAGLPPRRLELEITESAIIGDRTRALHLLRQIKAL 804

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETT 912
           G+ + +DDFGT  S L  L   PFD +K + S +    S  +  AI+R+++ + +++E  
Sbjct: 805 GVGIAMDDFGTGYSSLDTLQAFPFDKIKIDKSFVLKAVSNHQATAIVRAVLALGRSLEIP 864

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           ++A+ +  E  +  L R GC   Q  +   P
Sbjct: 865 VLAEGVETEEQLAMLVREGCTEAQGYYYGRP 895



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 106/379 (27%), Gaps = 26/379 (6%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           D    + +     I  A+ ++  L         +      A      G  +  F  +   
Sbjct: 2   DHHQHWLVALAAFICFATAVSGMLLFREASRSGARNWLLAAGGTAGFGIWATHFVAMMGY 61

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM--- 299
           +        +W     +AL+  LI   F           +     +     + +  M   
Sbjct: 62  LPGFEVSYRLWPTVGSLALAVVLITAGFA---VALRFPTLVGAALAAAITGSGVAAMHYL 118

Query: 300 -SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI---FIWFIGLW 355
                 M           ++ +      +            ++PA +L+    +      
Sbjct: 119 GVMAMDMPALVRFDAVYLALSVVLAIAPLIPAFHLARSERHVLPACLLLTLAVVGLHFTG 178

Query: 356 MAITKRLDND-------IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-Q 407
           M   + + +        ++   ++  LV +   +   +    LA     QGI   GER  
Sbjct: 179 MTAIELVPSRRAASDVILLSQQVMTWLVSVAAGLVVIICLSALAHVRRVQGIVRQGERDM 238

Query: 408 SLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           ++ V G  D  ++                 + G A     G     L   +  +      
Sbjct: 239 AVIVNGISDCAMFMLTPDGIVKAWNKSAQRLNGYAEADALGLS---LERFYAGEGRPSCF 295

Query: 467 ILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +    R  GR   E      D    W  + I  + ++   I+ +I I  D+T  ++ 
Sbjct: 296 ACKALDEARHDGRYTGEDWSLRKDGTRFWSHVTIERVIDARERIVGFIVIIRDMTRARED 355

Query: 526 LEG-ILCNAFQDNLTGIPN 543
            E      A  D  T + N
Sbjct: 356 QERLSETRAHLD--TALDN 372


>gi|288959406|ref|YP_003449747.1| sensory box/GGDEF family protein [Azospirillum sp. B510]
 gi|288911714|dbj|BAI73203.1| sensory box/GGDEF family protein [Azospirillum sp. B510]
          Length = 879

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 129/592 (21%), Positives = 255/592 (43%), Gaps = 10/592 (1%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTT 430
             G ++  +L+   V     +       + +  ER         D +   D+     +  
Sbjct: 288 GIGALVWGLLLRRQVEHKTESLRAAVTALTASEERVRTIFDSVNDAIVIHDLDSGAILEV 347

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
              +  +  +    +       L            +           +L  E+  R  D 
Sbjct: 348 NRRMREMYRVGEVPLSDLDVGMLSSGEPAFTAEVASEWRDKAANGEPQL-IEWHARRLDG 406

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  + +R     +G+  R + +  DITE+K + E +   +  D LT +PNR    DR
Sbjct: 407 TLFWAEVSMRRAV-IDGNDRRVLVLIRDITERKAAQERMEYLSRHDALTLLPNRVLVQDR 465

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
               L  S  +  L   ++   +D++K +ND LG AVGD +L ++  R+  +++  D ++
Sbjct: 466 TEQALARSERNGRL-VALVACGLDRFKTVNDSLGHAVGDALLRAVAERLKAVVRDTDTIS 524

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R  G+ F ++L    +   + +   ++ +++A P  +   E+TVT S G A   +     
Sbjct: 525 RGGGDEFILLLSGRPDIDAVVETVASLHEAMAKPFLVDGHELTVTLSSGVALAPADGRDF 584

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPII 728
           + +LKNA+ A++HAK  G +    +  +        +     L  A+E  E  + Y P +
Sbjct: 585 ATLLKNADTALHHAKAAGRDTHRFYAEAMNAEAVAHLSTRSGLRRALERGEFLIHYQPQV 644

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L    + G EAL++W+ P+ G +    F+ IAE+  +I  I  ++L    R   +WR  
Sbjct: 645 CLETGAVTGAEALLRWNDPERGMVPPGAFIPIAEDSGLIVPIGAWVLAEACRQAAAWRA- 703

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + + +N+++  L   +L   +   +S +   P  ++L  +ES+++ N +     L
Sbjct: 704 -GGLSLSVAVNLSALQLQRGDLVRTVTQALSGSGLDPLLLELELTESMLIQNTDVVMDNL 762

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
            R++ +G+ +++DDFGT  S LSY+G +  D +K + S +           I  ++I MA
Sbjct: 763 KRIKAMGVQVSIDDFGTGYSNLSYIGRLAVDKLKIDRSFVADLTHDHDSAKITAAVIQMA 822

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            ++  T +A+ +     +  L  + CD  Q   +  P    ++ +  ++  P
Sbjct: 823 HSLNLTAVAEGVEDAATLAALRGLNCDIAQGYFLGRPGPAEAVERAARQVNP 874


>gi|87118350|ref|ZP_01074249.1| sensory box protein [Marinomonas sp. MED121]
 gi|86165984|gb|EAQ67250.1| sensory box protein [Marinomonas sp. MED121]
          Length = 702

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 138/585 (23%), Positives = 247/585 (42%), Gaps = 20/585 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGS 444
            +   +      +   +        +  S D ++  D      +         L      
Sbjct: 116 RMIAQVVDLTEHKKTAASLLMFKTLLDSSNDAIYVIDSHSSYIIECNQLGVEYLANKKEE 175

Query: 445 MHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +   ++ + L      D   +   +D     +    +              + I I  + 
Sbjct: 176 VIHKLKVSDLNPKMAGD-GAWPAFIDKIKKSKSIIFERTH--THIKGYDFPVEISISYIE 232

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               +    + +  DI+++K   + I   A  D+LTG+PNR+  LDRL  ++       N
Sbjct: 233 FE--EKTYVLAVMRDISQRKADEKLIWQQANYDHLTGLPNRRLLLDRLEQLIHRI-HHTN 289

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +  +D+D++K++ND  G A GD +L  + +R+ + ++  D +ARL G+ F II+  
Sbjct: 290 SSLALFYLDLDRFKEVNDKFGHAKGDLLLQDVAKRLTQCVRKSDTVARLGGDEFTIIIAE 349

Query: 624 ENNSLKI-----ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
             +  K         A A+  ++  P  L   ++ ++ASIG   +      S  +L  A+
Sbjct: 350 LEDEDKANKITVERIAQAILNALNRPFKLDNEQVYISASIGITFYPEDANFSDVLLNAAD 409

Query: 679 LAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK +G N  + F  S       R+ + ++L LA+E  E +LVY PII L    I 
Sbjct: 410 QAMYAAKKQGKNCFQYFSFSMQEEALSRLQLVKELHLAIEKQEFHLVYQPIIALKTGLIS 469

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EALI+W HP  G +  +EF+  AEE  +I  I  ++ +++A+ +  WR     P   +
Sbjct: 470 KAEALIRWQHPTRGLVYPNEFIPTAEETGLICEIGDWVFKQVAQQVAKWR-IKLDPNFQL 528

Query: 797 LINIASKD-LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            IN +  + L  N         ++        + +  +E ++M +       L   + +G
Sbjct: 529 NINTSPIEYLKSNAFLGNWVEYLNAYSVPGEALAIEITERILMDSHSFIPKKLVNFQSLG 588

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913
           I + LDDFG   S LSY+     D +K + S +   T       +  +I+ MA  +   +
Sbjct: 589 IDVALDDFGMGYSSLSYIKKFDIDFLKIDRSFVKNITTSVNDKIVCEAIVAMAHKLGIKV 648

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERF 957
           +A+ I  E   + L  +GCDY Q    + PL   +   K++KE  
Sbjct: 649 VAEGIETEAQRRCLKDIGCDYGQGFLFSVPLDSAAFEQKMIKEHL 693



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                + ++LG  S  ++      L   H ++ +  + I +         +  E +    
Sbjct: 37  YVNRAMLSLLGYTSDEIYDTN---LIISHPDNIEVNQCIRERLRQNPFDTVVIEKKYLHK 93

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             +    ++ +   ++  G+I R I    D+TE KK+   +L 
Sbjct: 94  SGRTIEGLLTLAAEADEEGNIKRMIAQVVDLTEHKKTAASLLM 136


>gi|299529805|ref|ZP_07043238.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
            S44]
 gi|298722219|gb|EFI63143.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
            S44]
          Length = 1046

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/604 (21%), Positives = 260/604 (43%), Gaps = 37/604 (6%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             ++Q +       Q      ++    +      +   D+    V    +   + G   G 
Sbjct: 430  VLVQDISGRKRLEQMERLGHQQLRNLMQRLPVGLVMEDLDGRLVYWNEEFLRLAGH-GGK 488

Query: 445  MHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-------- 494
                 + W   +  +  +R+      ++     R  LQ     R  D Q  W        
Sbjct: 489  PGVSTQQWWERMFPDAAERERVIQRWEAAKAQARRTLQLRQSERVDDVQAQWDELATEAS 548

Query: 495  ---MIIRIRPMSNSNG-----------DILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
               +  +   +S  +G                + +  D +++  + + +   AF D LTG
Sbjct: 549  ACTVSAQTLMLSGVDGLRRPVAVSAVLQAEGCLMVLQDQSQRMAAEQEVRRLAFYDALTG 608

Query: 541  IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
            +PNR+   DRL   L ++    +    V+++DID +K  N+  G+  GD +L S+++RI 
Sbjct: 609  LPNRRLLADRLQQALAVAQRKAHF-GGVVLLDIDNFKAFNETYGLDQGDLLLQSMSQRIR 667

Query: 601  ELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVT 655
             LL     +AR  G+ F +++    +     + ++   A      +  PI +     ++T
Sbjct: 668  GLLPSGATIARQGGDDFVLLIEDLGSDSVAAAARLEQQADQWLSRLREPIEIGGIPRSIT 727

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
             S+G + +   ++T  E+ + AE+AMY AK +G N    F         +R  +++D+  
Sbjct: 728  VSMGLSLFGEPELTGEEVQRRAEMAMYQAKSQGRNVSCFFDPQLQSALQERRTLEQDMRA 787

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
             ++  E  L Y P +     +++G E L++W HP+ G +  + F+ +AEE  +I  +  +
Sbjct: 788  GLQAGEFELFYQPQV--EMGKVIGAEGLLRWKHPEKGFVPPAHFIPLAEETGVILPLGDW 845

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +L+   + +  W        + + +N++ K    +   E +   +++      R+KL  +
Sbjct: 846  VLQAACQQLAKWAKHPRYAQLVLSVNVSPKQFHQSGFVEQVLKALAEHGADARRLKLELT 905

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
            E +++ + + +   + RL+  GI  +LDDFGT  S LSYL  +P D +K + S +    +
Sbjct: 906  EGMLVSDVDDTIAKMMRLKSYGIGFSLDDFGTGYSSLSYLKRLPLDQLKIDRSFVRDVLT 965

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 AI R+I+ +AK++   +IA+ +  +   + L  + C   Q   ++ P+  +    
Sbjct: 966  DPNDAAIARTIVALAKSLSLHVIAEGVETQAQCRFLEGIRCYAWQGYLMSPPVPVSEFES 1025

Query: 952  LLKE 955
            L+  
Sbjct: 1026 LVTN 1029



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMH 446
                  + +Q       R       +   V + DI     +        +LG  +  +H
Sbjct: 307 SWSRRLKFSAQARQESDARFHAMCEQAAMGVLELDIATRSVLKANQHFCQLLGYEAQEIH 366

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              R+ L  +   D+ +   +L+     +      EF +R+ +    W+ +         
Sbjct: 367 --RRSVLELVMPEDQAHCAQLLEGLDLQQFQHNAGEFCLRSKEGAPVWVELNA--FLTGR 422

Query: 507 GDILRYIGIANDITEQKKSLEGIL 530
            +  R   +  DI+ +K+  +   
Sbjct: 423 HESRRLQVLVQDISGRKRLEQMER 446


>gi|209551672|ref|YP_002283589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537428|gb|ACI57363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 794

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 147/762 (19%), Positives = 282/762 (37%), Gaps = 39/762 (5%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           ++G  + + ++            L    +      G  +  F  +            +  
Sbjct: 25  LVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTGVWATHFIAMLAYDGGTPISYALDL 84

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL---FCMSFYYPMVTASIA 311
                 LS          L  ++  A+        +  + I                 + 
Sbjct: 85  TLLSFFLSVGGSWVAI--LAASQREARFSSTRGGALMALGIASMHLTGMQAIETQAVILY 142

Query: 312 RITLASIVLYYTYFIIYHGMKGY---ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
              +    +     +       +   +    L+ A ++  +    L       +      
Sbjct: 143 DSAMTLTAVVAGMLLSSAAFHLFFNLKGMRRLLSASLVFVLAICTLHFMSMGSITLVPDP 202

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGI---FSDGERQSLAVLGSGDIVWDWDIVR 425
              V  LVL   ++   V+    A    +  +    S           S + +       
Sbjct: 203 GKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSHLTDLRGLANASQEGLLILR-EG 261

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +        + G     + G           +D     T + +    R G    E  +
Sbjct: 262 RIIDVNERFQALSGWKLADLSGKA--------PSD---VLTAIQAPRENRPG----ETLL 306

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
                +   + +    +    G     + +  D+TE+K++ E I   A  D LT +PNR 
Sbjct: 307 NTRTGREIAVDVNSSRIV-YRGRDCEVLAV-RDLTERKQAEEMIEHLAHHDVLTDLPNRS 364

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  R+   L ++    N    +  +D+D++K +ND+ G A GD +L  +   +  +   
Sbjct: 365 LFDTRIRQALQVAER-KNTEVALFCLDLDRFKAVNDIFGHAEGDRILRKVAAILRRVAGE 423

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARL G+ F II             A  +    A  ++       V  S+G A +  
Sbjct: 424 SDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIALYPR 483

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
              T+ E+  NA+ A+Y  KH G      F         +R  I+ DL  A+  ++L++ 
Sbjct: 484 DGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQLHVS 543

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+     EI G EAL++W  P  G      F+ +AEE   I  +  ++L++  R+  
Sbjct: 544 YQPILNAQSVEISGYEALMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACREAA 603

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W       P+ I +N++    +   LCE ++A++ +T  +P R++L  +E+ ++ + +R
Sbjct: 604 RWPQ-----PLTIAVNVSPVQFMLPNLCERVEAVLDETGLAPDRLELEITEAALIRDRDR 658

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRS 901
               L RLRK+G+ + +DDFGT  S LS L   PFD +K + S   +        +I+R+
Sbjct: 659 VMATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRA 718

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           II +  ++   ++ + +  E+  + +   GC  +Q   +  P
Sbjct: 719 IIGLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKP 760


>gi|241764595|ref|ZP_04762611.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241365958|gb|EER60584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 946

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 124/605 (20%), Positives = 256/605 (42%), Gaps = 14/605 (2%)

Query: 362 LDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           L    +     G       + G    +  +       + + ++ ER  + +    D V  
Sbjct: 327 LPAREMVYYQAGFTTTDGAVAGTIGALVDITERRQAEEALRAEKERAEVTLASIADGVIT 386

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D      T       + G  +    G     +  ++  ++       +         L 
Sbjct: 387 TDQGGRIETINEAAQFMTGYTAQQALGRALPEVFKLY--EKPLGLATSEEARPGADPLLT 444

Query: 481 ---YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                  +     + + +     P+  ++G +   + +  D+TE +   + +  +A  D 
Sbjct: 445 PKATHQVLIHRSGERYAIEYTAAPIRQADGTVAGRVLVFRDVTETRNLRQQLSWHARHDA 504

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+ NR +   RLT  +  + +  N+   V +ID+D ++ IN+  GI VGD +L  +  
Sbjct: 505 LTGLYNRTALAVRLTHAIFTARSQGNV-LAVCLIDLDHFQAINEQHGILVGDRLLKEVAL 563

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+    +  D +AR+ G+ F ++L    ++  I +    +   +A P  + +  +  TAS
Sbjct: 564 RLTAFARPTDAVARMGGDEFALLLGELPHARAIEERLTLLLAQLAQPYAIDDLALQCTAS 623

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAV 715
           +G A +         +L++A+ AM  AK  G N +  F V   R  +     +  +  A+
Sbjct: 624 VGVAVFPPDNAGPDTLLRHADQAMCQAKAAGRNQMHFFDVRLDREVQTLHSQQTRIAQAL 683

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              EL L Y P + L   EIVG+EAL++W HP+ G +   E   + ++  +I A+  + L
Sbjct: 684 HAGELRLHYQPKVNLRTGEIVGMEALMRWQHPERGLLGPHEIFPLIDDTDLIVAVGEWAL 743

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSE 834
           +     +  W          + +NIA++        + ++ ++       P+R++L   E
Sbjct: 744 QEALAQMRVWTRAG--MGWSVSVNIAARQFHGGNFVDRLKDILHGCPEVPPARLELEILE 801

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S  + + +  R ++ + + +G+   LDDFGT  S LSYL  +P +T+K + S + G    
Sbjct: 802 SAALEDIQYMRQMMHKCQALGVRFALDDFGTGFSSLSYLKRLPAETIKIDQSFVKGILHD 861

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              + ++ +I+ +A      +IA+        ++L ++GC+  Q   +A  +  + +++ 
Sbjct: 862 PDDLTLVGAIVALASAFHRQVIAEGAESRAHCEKLLQLGCELAQGHGIAPAMPAHEVMEW 921

Query: 953 LKERF 957
            +   
Sbjct: 922 ARNHQ 926


>gi|264678827|ref|YP_003278734.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
            CNB-2]
 gi|262209340|gb|ACY33438.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
            CNB-2]
          Length = 1115

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/604 (21%), Positives = 259/604 (42%), Gaps = 37/604 (6%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             ++Q +       Q      ++    +      +   D+    V    +   + G   G 
Sbjct: 499  VLVQDISGRKRLEQMERLGHQQLRNLMQRLPVGLVMEDLDGRLVYWNEEFLRLAGH-GGK 557

Query: 445  MHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-------- 494
                 + W   +  +  +R+      +      R  LQ     R  D Q  W        
Sbjct: 558  PGVSTQQWWERMFPDAAERERVIQRWEVAKAQARRTLQLRQSERVDDVQAQWDELATEAS 617

Query: 495  ---MIIRIRPMSNSNG-----------DILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
               +  +   +S  +G                + +  D +++  + + +   AF D LTG
Sbjct: 618  ACTVSAQTLMLSGVDGLRRPVAVSAVLQAEGCLMVLQDQSQRMAAEQEVRRLAFYDALTG 677

Query: 541  IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
            +PNR+   DRL   L ++    +    V+++DID +K  N+  G+  GD +L S+++RI 
Sbjct: 678  LPNRRLLADRLQQALAVAQRKAHF-GGVVLLDIDNFKAFNETYGLDQGDLLLQSMSQRIR 736

Query: 601  ELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVT 655
             LL     +AR  G+ F +++    +     + ++   A      +  PI +     ++T
Sbjct: 737  GLLPSGATIARQGGDDFVLLIEDLGSDSVAAAARLEQQADQWLSRLREPIEIGGIPRSIT 796

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
             S+G + +   ++T  E+ + AE+AMY AK +G N    F         +R  +++D+  
Sbjct: 797  VSMGLSLFGEPELTGEEVQRRAEMAMYQAKSQGRNVSCFFDPQLQSALQERRTLEQDMRA 856

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
             ++  E  L Y P +     +++G E L++W HP+ G +  + F+ +AEE  +I  +  +
Sbjct: 857  GLQAGEFELFYQPQV--EMGKVIGAEGLLRWKHPEKGFVPPAHFIPLAEETGVILPLGDW 914

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +L+   + +  W        + + +N++ K    +   E +   +++      R+KL  +
Sbjct: 915  VLQAACQQLAKWAKHPRYAQLVLSVNVSPKQFHQSGFVEQVLKALAEHGADARRLKLELT 974

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
            E +++ + + +   + RL+  GI  +LDDFGT  S LSYL  +P D +K + S +    +
Sbjct: 975  EGMLVSDVDDTIAKMMRLKSYGIGFSLDDFGTGYSSLSYLKRLPLDQLKIDRSFVRDVLT 1034

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 AI R+I+ +AK++   +IA+ +  +   + L  + C   Q   ++ P+  +    
Sbjct: 1035 DPNDAAIARTIVALAKSLSLHVIAEGVETQAQCRFLEGIRCYAWQGYLMSPPVPVSEFES 1094

Query: 952  LLKE 955
            L+  
Sbjct: 1095 LVTN 1098



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 5/144 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMH 446
                  + +Q       R       +   V + DI     +        +LG  +  +H
Sbjct: 376 SWSRRLKFSAQARQESDARFHAMCEQAAMGVLELDIATRSVLKVNQHFCQLLGYEAQEIH 435

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              R+ L  +   D+ +   +L+     +      EF +R+ +    W+ +         
Sbjct: 436 --RRSVLELVMPEDQAHCAQLLEGLDLQQFQHNAGEFCLRSKEGAPVWVELNA--FLTGR 491

Query: 507 GDILRYIGIANDITEQKKSLEGIL 530
            +  R   +  DI+ +K+  +   
Sbjct: 492 HESRRLQVLVQDISGRKRLEQMER 515


>gi|170740930|ref|YP_001769585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168195204|gb|ACA17151.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 793

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 124/549 (22%), Positives = 234/549 (42%), Gaps = 30/549 (5%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +  E   L    +   +W  D     +          G AS          L      
Sbjct: 260 VKAREESARLLFETNPLPMWVTDEAGRFLAVNDAAIGHYGYASPDFLRMSLRDL------ 313

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                       V    G  +   R R  D     +    R +          +    D+
Sbjct: 314 -----------AVAGGAGSGEAPARHRRRDGSVIEVAAYSRRIPFEGRSAT--LTALVDV 360

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE++++   I   A  D LT +PNR  F  R+   L+ +   D     ++ +D+D++K +
Sbjct: 361 TERRRAEARITHMAHHDALTDLPNRVLFRQRIVAALE-AQARDGRSAGLLCLDLDRFKLV 419

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD++L    +R+    +    +ARL G+ F ++  ++     +A     +  
Sbjct: 420 NDTLGHPAGDELLRQAAQRLASCAQDG-SVARLGGDEFALLAPADGPEAVMATARRVIAA 478

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
               P  +  + + V AS+G A   +       +L+ A++A+Y AK  G     +F  + 
Sbjct: 479 LAQQPFLVAGQAVQVGASVGVALLPADGTDPDVLLRRADMALYAAKAAGRGTAVAFEPAM 538

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             + +    ++ DL  A+E   L + Y P+       I+G EAL++W HP  G +   EF
Sbjct: 539 DEAIQARRILEADLRAALEAGALEVHYQPLHDCRTLRILGCEALLRWRHPARGFVPPGEF 598

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+L +I  +  F+L    R+   W       P+ + +N++        L   + A+
Sbjct: 599 VPLAEDLGLIGELGAFVLRAACREAAGW-----SVPLRVAVNLSPAQFRSPGLALSVTAI 653

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++T   P R+ L  +E+V++     +  +L  LR +G+ + +DDFGT  + LSYL   P
Sbjct: 654 LAETGLDPRRLDLEITETVLLSEDAANVAILSELRALGVRIAIDDFGTGYASLSYLRAFP 713

Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +   G   +  AI+R++  + +++    + + +     +++L   GCD +
Sbjct: 714 FDQIKIDRSFVGRLGEDPQSAAIVRAVTDLGRSLGIVTVGEGVETPRQLEQLRAFGCDVV 773

Query: 936 QDSHVASPL 944
           Q   +  P+
Sbjct: 774 QGYLLGRPV 782


>gi|300023463|ref|YP_003756074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525284|gb|ADJ23753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 625

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 255/566 (45%), Gaps = 32/566 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIH-------- 457
             LA+      +  +D  +  +        +  L    +  G     L   H        
Sbjct: 61  LELALNNMARGLSMFDANQRLIVCNRMYEELYDLPQHLTRPGTTLAELVRNHVKRETGLD 120

Query: 458 -INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +R   R  ++  V        +                RI  ++N   +   ++ I 
Sbjct: 121 NPQERKKQRAWIERHVAALARGETFTHTQHLKSG-------RIVLVTNKPLEGGGWVDIQ 173

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++++ + I   A  D LT I NR  F + L   L   A   +    +  ID+D +
Sbjct: 174 EDITERRQAEQKIHWLARHDPLTEIANRLQFHEALDEALRNLA--PSQTLALHWIDLDGF 231

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFA 634
           K +ND LG  VGD +L S+ + +   ++  DI+ARL G+ F ++               A
Sbjct: 232 KTVNDTLGHPVGDALLKSVAKSLKRAVRKNDIVARLGGDEFAVLQSASRVVRKADAERMA 291

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + K I  P +L  ++++ +ASIG A       T+ ++LK A+LA+Y AK  G      
Sbjct: 292 QRLLKEICKPHDLGGQQVSCSASIGIAFAPLHGQTAEQLLKAADLALYKAKAGGKGIAFF 351

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        + R  ++ DL  A++ ++L L Y P++   + +++  EAL++W HP  G I
Sbjct: 352 YDPDIADDANSRYELQSDLRGALDQNQLELYYQPLVDTENRDVIAFEALLRWHHPLRGMI 411

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           + ++F+ IAEE  +I  I  + L R  ++ + W D      I + +N++        L +
Sbjct: 412 APADFIPIAEETGLIVEIGEWALIRACQEAVKWPDT-----IRVSVNLSPIQFERGNLYQ 466

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   +  +  +P R++L  +E V++ +   +R +L  LR +G  + LDDFGT  + LSY
Sbjct: 467 AVVNALRISGLAPHRLELEITEGVLLRDEINTRAILHNLRTLGARIALDDFGTAYASLSY 526

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           L   PFD +K + S +      +     AI++++  + K ++ + +A+ I      + +T
Sbjct: 527 LRSFPFDKIKIDRSFVRDLDVGKRKDCEAIIQAVAGLGKQMQISTVAEGIETLDQAQTVT 586

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
             GC+ +Q  + + P+  + + K+L 
Sbjct: 587 AAGCNELQGFYFSHPVPGSDVDKVLA 612


>gi|186474063|ref|YP_001861405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184196395|gb|ACC74359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 666

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 127/540 (23%), Positives = 241/540 (44%), Gaps = 11/540 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+    + G    W  ++           +  F  +     + 
Sbjct: 128 DRAGRIQRFNRLAEELTGMKEEDVIGRN-VWALFMSSEAGAASSQNISGFFQHGVA-YEV 185

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E RVR    +  ++      MS S  D    I    DIT+++ + E +   A  D+LTG+
Sbjct: 186 ERRVRTVHGERLFLFRNKFVMSGSGVDEQFLICSGTDITKERNAQERLSELANTDSLTGL 245

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR +  D+    +  +A        ++ +D+D +KK+ND  G   GD ++  ++  + E
Sbjct: 246 PNRNAIHDKTRAAIASAA--PGNAVGILFLDLDNFKKVNDHYGHVFGDRLIQDVSSAVRE 303

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L        +   A  + + + MP +L   E+    SIG A
Sbjct: 304 CLDGADTLARLGGDEF-IVLSPVATVASMEAMAQRILERLRMPFSLGLVEVYTGCSIGIA 362

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +     +   +++ A+ AMY AK  G      F     R   + + +  +L   +E  +
Sbjct: 363 MFPEHGDSLEALIRAADTAMYVAKDDGKRTYRVFSPEMNRKVAEYMWLDTNLRRGLEEGQ 422

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G+EAL++W+ P+ G I  + F+  AEE  +I  +  ++++  A
Sbjct: 423 LTLHYQPKLSLATGAVYGVEALVRWNSPERGQIMPAAFIRYAEESGLIGPLGRWVMQTAA 482

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                W+ +     + + IN++++ L+D  +       + +    P  + +  +ES ++ 
Sbjct: 483 EQAAQWKARG--LSLRVAINVSARQLVDTAVVSHFTEALQRAQLDPCLLDIELTESCLIE 540

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +   +  L+ + R +G  + LDDFGT  S LS LG IP D +K + S ++         A
Sbjct: 541 DEAAAIDLITQFRDLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVSSINADSKSQA 600

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ ++  ++A+ I  E +   +  +G +Y+Q      P+      + L +R 
Sbjct: 601 LVRSMVAVAQALQLKVVAEGIETESEELFMKGLGVEYVQGYLYGKPMPAADFERWLHDRQ 660


>gi|218900474|ref|YP_002448885.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|218541726|gb|ACK94120.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
          Length = 735

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 145/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      +   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 236 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    VM +D+D++KK
Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 351

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ +  R+   L+  D++AR  G+ F I+L    +       A  + 
Sbjct: 352 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 471

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E +L Y P +    +EI+G EALI+W HPK G +S ++
Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 531

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 590

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 591 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+
Sbjct: 651 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 710

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732


>gi|212638999|ref|YP_002315519.1| GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus
           WK1]
 gi|212560479|gb|ACJ33534.1| Multidomain signal transduction protein (GGDEF and EAL domains)
           [Anoxybacillus flavithermus WK1]
          Length = 765

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 236/444 (53%), Gaps = 7/444 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E     E +   A  D LTG+ NR++F+ +L   L  +    +    V+ ID+D++K+I
Sbjct: 322 SELVHLNEQLTYVANHDFLTGLFNRRAFVMKLEEELIRAKQQQH-HFAVIFIDVDRFKQI 380

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD+++V + R + E ++  D +AR  G+ F II     +  ++  F   +  
Sbjct: 381 NDYFGHQIGDELIVQIGRLLKETIRPTDFIARQGGDEFTIIFTPFKHVDELRRFVHRLVS 440

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
               P+ +   +I ++ S+G A +     T   ++K+A++AMY AK +G N  + F    
Sbjct: 441 FSQQPVAVQHLDIRISLSVGVAVYPYDGETVETLMKHADIAMYRAKEQGKNQYQFFNGEM 500

Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            R      MI+  L  A++N +  L Y P   +   E++G+EALI+W HP+ G IS + F
Sbjct: 501 DRVVLQKTMIETALHEAIDNKQFTLFYQPQFDVQTGELMGVEALIRWVHPELGTISPAMF 560

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE   I AI  +++E   R I +W +Q     + + +NI+ K  L     E ++A+
Sbjct: 561 IPIAEETGQIIAIGKWVIEEACRQIQTWNEQHGR-SLRMSVNISPKQFLKENFVEHIRAV 619

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P ++ L  +E V + N + +   L +L+++G+ +++DDFGT  S LSYL   P
Sbjct: 620 LQQTQLPPDQLDLEITEGVAVFNEQYTIQKLQQLKQLGVHISIDDFGTGYSSLSYLRKFP 679

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K     + G TE++   A++++II +AKN++  +IA+ +     +  L  + CD I
Sbjct: 680 INRLKIAKPFIDGITEEKEDVAVVKAIIVLAKNLKLRVIAEGVETLQQLNILRSLQCDEI 739

Query: 936 QDSHVASPLGFNSILKL-LKERFP 958
           Q   +  P+  +   KL ++ + P
Sbjct: 740 QGYVLGKPVPADQFAKLYIENQLP 763


>gi|89093689|ref|ZP_01166636.1| c-di-GMP phosphodiesterase A-related protein [Oceanospirillum sp.
           MED92]
 gi|89082085|gb|EAR61310.1| c-di-GMP phosphodiesterase A-related protein [Oceanospirillum sp.
           MED92]
          Length = 821

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 131/573 (22%), Positives = 255/573 (44%), Gaps = 18/573 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +          +  +GD ++        V T       L + S  + G           
Sbjct: 241 ELSRSESFSRSLMENAGDAMFLCKSDTSIVRTNRQAELTLKIDSNKIIGRSLADFS--ES 298

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                     D     +    + + ++  +      +  R   +     + L  + +A D
Sbjct: 299 FTVAELEKRFDELSDDQVSTFE-DLQI-DSTGSAFPIEARGIKVHLE--EQLYILIMARD 354

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT +K + + +   AF D LTG+ NR+ F+DRL++ L L  T+      V+ +D+D++K 
Sbjct: 355 ITARKAAEKQVYELAFFDTLTGMANRRLFMDRLSSSLVLHQTNGKY-GAVLYMDLDRFKT 413

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADF 633
           IND LG   GD +L +++ RI  ++      AR  G+ F I+L       E+     A  
Sbjct: 414 INDSLGHGAGDLLLKAISGRINSIIPTGATSARFGGDEFVILLPEAGIDKESCIEAAAHL 473

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + +    P  +    +  T S+G A +      S ++L+ A+ A+Y  K +  N  +
Sbjct: 474 AEDIIQQFTDPFLVDSHSLYCTISVGIALFPEQNSNSGDILRRADTALYRVKAKSRNGFQ 533

Query: 694 SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +      S +  +  ++ L  A+E+ EL L Y P I     E +G EAL++W+HP+ G 
Sbjct: 534 FYDPEMQSSAQERLNVEKGLHQAIEHGELELWYQPQI-GAKGECIGAEALLRWNHPERGL 592

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNEL 810
           +   +F+ IAE+   I  I  ++L +    +  W ++        + +N++    +  + 
Sbjct: 593 VFPGDFIQIAEDSGQIVEIGNWVLAQGVSQLKGWMERGLPSTFRRLAVNVSPLQFMQVDF 652

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  L+ ++      ++L  +E++++ N E +   +  L+K G+S  +DDFGT  S L
Sbjct: 653 VDRVSTLLDESGIPGFMLELEITENMLLNNFEIASQKMKLLKKKGVSFAIDDFGTGYSSL 712

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL ++P D +K + S +T      ++ AI++ II  A  ++  +IA+ +    +   L+
Sbjct: 713 KYLRHLPLDILKIDRSFVTDLRPHSEQAAIVQVIIATADRLDLVVIAEGVETTEECNTLS 772

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           ++GC+  Q    + P+   +    + ER   +K
Sbjct: 773 QLGCNCFQGYLFSKPVQAETFFSYVTEREQQLK 805


>gi|91975908|ref|YP_568567.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91682364|gb|ABE38666.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisB5]
          Length = 894

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 132/577 (22%), Positives = 256/577 (44%), Gaps = 21/577 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGL 440
               + + V      ++ +        L V      V   +      +        IL  
Sbjct: 309 FIIVLFEDVTERQMLARELDKTRRFLELVVDNIPVAVTVQNASNGAYLLANRGAEVILNR 368

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     +               D    ++ G +  E+ +   +      + R  
Sbjct: 369 RREDAIGLTSGEIFNAKE---ARLIEERDQLAIHKGGMMVEEYPISTKNG-LRLFVTRRM 424

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +++  G+    I    D+T+++++   +   A+ D LT +PNR +FL  L  +++    
Sbjct: 425 TVADEAGNTNYLIKTHADVTDRRQTEARMAHMAYHDGLTDLPNRTAFLKALAQMIEACDC 484

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             + +  V+ +D+D   +INDV G AVGD +L+ + RRI        ++ARLSG+ FG+I
Sbjct: 485 TVD-QFAVLSVDLDGLAEINDVFGHAVGDKLLIEVARRIERAS-RGGVVARLSGDEFGLI 542

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A  + +++A  + +  + +    + G A +      ++ +L NA  A
Sbjct: 543 IDGPQ-PQAAHALAERVAEALADGLEIDGKTVRTGVTTGIALFPRDGKDAASLLANAGAA 601

Query: 681 MYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI----IRLMDEE 734
           ++ AK R    V  F   +     DR  + +DL  A+ N EL L Y P       + + +
Sbjct: 602 LFRAKARARGSVSLFAPEMDMQIRDRRALHQDLSNAIRNGELTLHYQPQAASSKSIDETD 661

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG EAL +W HP  G +   EF+ +AEE  +I  I  ++L    R+  SW       P+
Sbjct: 662 VVGFEALARWRHPTRGFVPPGEFIPLAEESGLIVEIGEWILREACREAASWPK-----PL 716

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++    L+++L   +  ++ +T   P R++L  +E V++ + ER   LL R++ +
Sbjct: 717 QIAVNLSPAQFLNSDLVGFIHQVLLETGLQPGRLELEITEGVLIEDFERGLALLRRVKAL 776

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S L+YL   PFD +K + + +       +  +I+R++I +   +  +
Sbjct: 777 GVRVSMDDFGSGYSSLTYLQAFPFDKIKIDRAFIMNLGRNAQSASIVRAVIGLGHGLGVS 836

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           ++A+ +  +  +  L   GCD +Q   +  P   +  
Sbjct: 837 LVAEGVETQEQLDFLVDEGCDAVQGYLIGRPAPIDQF 873


>gi|254470638|ref|ZP_05084041.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
 gi|211959780|gb|EEA94977.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
          Length = 972

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/570 (24%), Positives = 257/570 (45%), Gaps = 22/570 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q +         A+      +  +D  +  +        I     G        
Sbjct: 393 ELRKQEQELVKQNTLFDAALNNMSHGLCMFDTQKRLIVFNQRFDDIFACEQGE-GKIGMT 451

Query: 452 WLPYI--HINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           W   +      ++      ++     +    ++  F +         +++ + P      
Sbjct: 452 WDEMVQCMPLAQEFLEAEGENSVAQQHWPSTVRSTFTLTLQ--SEQVILMTLEPQDGG-- 507

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               ++ I  DIT++++  + +   A  D LT +PNR    +RL   +  +A + +    
Sbjct: 508 ---GWVAIFEDITDRQRISDHLSYLATHDALTKLPNRLLMNERL-QEMKQAALEQDEHFG 563

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K IND LG AVGD +LV + + + E +   +++ARL G+ F I+     + 
Sbjct: 564 ILWMDLDEFKTINDSLGHAVGDKLLVHVAKILREKVTNKEMVARLGGDEFAILSKLPASR 623

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++   A  + K +A P  L   EI V AS+G A ++       E+++ A+LA+Y AK+ 
Sbjct: 624 EQLEQLAKEVLKVVASPCFLEGHEIVVAASVGIAMFSREHQNVDELIRFADLALYQAKND 683

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F        +    +  DL  A  N EL + + P + L   EI G EAL++W+
Sbjct: 684 GRNTFRFFEDDMAAKIKQRQTLITDLYKATANRELEVYFQPQVNLATGEISGFEALLRWN 743

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP++G IS  EF+ +AEE  +I  I  ++L+        W  +     + + +N++ + +
Sbjct: 744 HPRYGFISPFEFIPLAEETGLILEIGAWVLDEACSLAAGWPKR-----VNLAVNLSPRQI 798

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L   +  ++++T   P R++L  +E+V++ +  R R  L +L+K G+ +++DDFGT
Sbjct: 799 YCEQLLPVVDDVLARTGLDPGRLELEVTETVLLADHLRVRQTLAKLQKSGVKISMDDFGT 858

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS L   PFD +K + S +      E    I+ S+I +A ++     A+ +  +  
Sbjct: 859 GYSSLSTLRRFPFDRIKVDRSFVMSMSKDEDAYFIVNSVIDLANSLGIATTAEGVESKEI 918

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++L R GC   Q  +   P   N  L  L
Sbjct: 919 AEQLKREGCTEAQGYYFGKPAPPNQALFWL 948


>gi|324999833|ref|ZP_08120945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia sp. P1]
          Length = 715

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/643 (22%), Positives = 280/643 (43%), Gaps = 17/643 (2%)

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-- 381
             +     +    A L  PA + I +  +G  +         + + A V G         
Sbjct: 69  PAVPAAAGRELIVARLTDPACLEISLRLLGAHLEPAADTAGRVRRLAAVAGAFARGYTDA 128

Query: 382 --------IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
                           + A     +  +    R +     +   +  +D     +     
Sbjct: 129 TRHQVLGEHETITRAALEARETAERARWVSESRFTAMFDSAAVGIVIFDPDAASIEANDA 188

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            AT+LG     + G       ++   D           +     RL+    VR AD+   
Sbjct: 189 AATMLGYTRAQLAG--MGVEEFVSRADAPGIWAERRRLLEGSLDRLRLVQPVRRADDAEI 246

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W+   + P+   +G     + + +D+T+Q +  + +   A  D LT +PNR  F +RL+ 
Sbjct: 247 WIDAVVTPLREPDGTAQLLVAVLSDVTDQLELQQRLEHQALHDPLTQLPNRSLFFERLSA 306

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARL 612
            +D    D   RP V  +D+D +K +ND LG   GD +L  L  R+   L+    ++AR+
Sbjct: 307 AIDRDGAD-GARPGVCYLDLDGFKVVNDTLGHQSGDQLLQVLADRLRSALEPDGHLVARM 365

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F +++    +  ++ + A     ++  P+ +  R+I ++AS+G       ++   E
Sbjct: 366 GGDEFVVLVERSTDRAELEEVAGRALGTVRRPVRIDGRDIVISASVGVVR-HDGELGPDE 424

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +++ A+  +Y AKH G      +     RSD     +   +  A+   +  +VY P++RL
Sbjct: 425 LMQAADTTLYSAKHAGRGRYVYYDRERHRSDVRRFELSSQMPEALRRDDFVVVYQPLVRL 484

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            DE+ VG+EAL++W  P    +    F+ +AEE  ++  +   +L+   R    W D+  
Sbjct: 485 ADEQTVGVEALVRWQRPDGELLGPDRFIPLAEETGLVVPLGRRVLDEACRQGRIWADERP 544

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ + +N+A++ + +++L   + A + +  +   ++++  +ES +MG+P R    L  
Sbjct: 545 DRPLLVSVNVAARQIGESDLVADVAATLERHDWPAGQLQIELTESDLMGSPGRPLATLRE 604

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIE 910
           L ++G+ + +DDFGT  S L+YL ++P   +K  G  + GS E+   ILR++I +A  ++
Sbjct: 605 LDRMGVRIAIDDFGTGYSNLAYLRHLPVHVLKLAGHFVAGSAERDDVILRTLISLASALD 664

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             + A+ +        L   GC   Q  + A  +    I  L+
Sbjct: 665 LEVTAEAVETREQAARLREYGCANAQGWYYAPAVVPGRIPDLI 707


>gi|323488320|ref|ZP_08093568.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323397978|gb|EGA90776.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 796

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 237/449 (52%), Gaps = 6/449 (1%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R + + +   + K+++  +   A+ D L+G+PNR+ FL++L   +  +    + +  V+ 
Sbjct: 342 RTVEVTSSNNQLKETVHQMKHMAYHDILSGLPNRRLFLEKLEASIVEAK-HKSHKLAVVF 400

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D++K IND  G   GD +L + ++RI + L+  D L+R  G+ F ++L +      I
Sbjct: 401 IDLDRFKNINDTFGHEFGDLLLQAFSQRILDNLRSIDTLSRQGGDEFTLLLNAIKEEKDI 460

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A     ++K++  P+ +  +E+ ++ SIG + +     T+ E+LKNA+ AMY AK +G N
Sbjct: 461 APIIHKLQKALEKPLIIKGQELYISMSIGISVYPKDGDTTDELLKNADNAMYSAKEKGRN 520

Query: 691 HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + + F             ++ DL  AV N E  L Y P I     EI+G+EALI+W    
Sbjct: 521 NYQFFSKDMAFVAARKTALEGDLNRAVINKEFTLHYQPQILAKTGEIIGMEALIRWQKND 580

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +S  EF+ +AEE  +I  I  ++L    +    W D      + + +N++S   + +
Sbjct: 581 GSIVSPGEFIPLAEETRLILPIGEWVLYTACQQAKKWHDD-GNSHLKLAVNLSSLQFMHD 639

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   +Q ++  T ++ S ++L  +ESVV+ + E++   +  LR+IG+ + +DDFGT  S
Sbjct: 640 DLITTIQKVLKTTGFNASSLELEITESVVLDDAEKAIARMQTLREIGVQIAIDDFGTGYS 699

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   P + +K     +       +  +++ ++I +A +++ ++IA+ +  E  +  
Sbjct: 700 SLSYLKRFPLNNLKIAQPFVQDMATNPRDKSLVEAMIFIAHSLDMSVIAEGVETEEQLAL 759

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L  +GCD IQ    + PL      KLL+ 
Sbjct: 760 LQDLGCDEIQGFLFSKPLPTTRFTKLLES 788


>gi|228903827|ref|ZP_04067942.1| Sensory box protein [Bacillus thuringiensis IBL 4222]
 gi|228855736|gb|EEN00281.1| Sensory box protein [Bacillus thuringiensis IBL 4222]
          Length = 735

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 145/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      +   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 236 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    VM +D+D++KK
Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 351

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ +  R+   L+  D++AR  G+ F I+L    +       A  + 
Sbjct: 352 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 471

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E +L Y P +    +EI+G EALI+W HPK G +S ++
Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 531

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 590

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 591 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+
Sbjct: 651 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 710

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732


>gi|168187002|ref|ZP_02621637.1| MorA [Clostridium botulinum C str. Eklund]
 gi|169295023|gb|EDS77156.1| MorA [Clostridium botulinum C str. Eklund]
          Length = 589

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 132/555 (23%), Positives = 247/555 (44%), Gaps = 17/555 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S  +  S + +   D     +        I       +          IH  D +  + 
Sbjct: 39  FSEIIEHSKEGIVILDEKLTVLYANCTFLKICERNIEEVRNK------RIH--DINKVKV 90

Query: 467 IL--DSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +  +  +R      E        + + + +  + + +       YI I +DIT+ K
Sbjct: 91  EFYKNIVINVKRNKTWTGELEYTTKSGRTYSLAVLGKSIISERDLRAYYIVIFDDITKLK 150

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S   I      D LT +P ++ F+  L   +        L   V+ + +D +K IN+ +
Sbjct: 151 ESERDINYLKKYDMLTELPQKELFIKNLKEEIIRLEGTGKL-VGVLTLGLDDFKFINEAM 209

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +TRR+   L     LAR++G+ FG+IL    N   I +    +++  + 
Sbjct: 210 GHLYGDELLKDVTRRLKT-LDEDHFLARITGDEFGMILTDCENVKHIENKVNDIQQLFSK 268

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              + ++EI VTASIG + +    +   +++ NA  A    K  G N  + +     ++ 
Sbjct: 269 SFLINDQEIFVTASIGISIYPLDALNVRDLIMNATSAQNFVKKNGKNSYKIYSKDMNKNA 328

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I+    L  AVEN++  L Y P + L    ++G+EALI+W+HPK G +   EF+ +A
Sbjct: 329 YKRIEMIALLKHAVENNQFILYYQPQVSLESGNVMGVEALIRWNHPKLGLVYPDEFIPLA 388

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  +++    R    W D      + + +N+++      +L + ++  +  +
Sbjct: 389 EKTGLIIPMGEWVIREACRQNKIWHD-NGFKNLVVSVNLSALQFEKEDLVDVIKDALRNS 447

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E ++M N +++   L  L+ IG+ + +DDFGT  S LSYL   P D +
Sbjct: 448 GLPPKFLEVEITEGILMVNTKQAIQTLNALKDIGVKIAIDDFGTGYSSLSYLKEFPIDRL 507

Query: 882 KFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + S + G   E   AI   II +AK++   ++A+       I  L    CD IQ  + 
Sbjct: 508 KIDRSFIMGIPKEDNGAIANIIIELAKSLHLKVVAEGTETMEHINFLKVRKCDTIQGYYF 567

Query: 941 ASPLGFNSILKLLKE 955
           + P+  +   ++LK 
Sbjct: 568 SKPVSGDGFTRILKN 582


>gi|81301328|ref|YP_401536.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|81170209|gb|ABB58549.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
          Length = 901

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 147/789 (18%), Positives = 303/789 (38%), Gaps = 75/789 (9%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR-ACSEIALSSSLIIFLFMYLHWNRWH 279
             A A       ++     + L    S               +SS I+F  + L    W 
Sbjct: 124 LLAAAVAQATVSALIGATGNCLFGAASWNRFFTIGWTWWTGNASSAILFFPVVL---LWC 180

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
            +              LF +S     +           +        ++  ++       
Sbjct: 181 NQWRQSLQLSAKRWLELFIISAIILAIATLAFASKPYPVSSLVIPVFVWLALR------- 233

Query: 340 LIPAWI---LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
               W+   + FI           +    ++    V   ++++     ++     +    
Sbjct: 234 FNSTWVSTGITFITLFAFISTANGKGQFSVLA---VNEALILLQSYNSSIAVMSFSLNAV 290

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIRNW-- 452
                +        +      V   ++             IL     S ++    + +  
Sbjct: 291 ISQARNSQTYLRQILDHLPIGVAVHELTGRMTYVNAVGREILRGKYKSATLEEMAKFFNI 350

Query: 453 ----LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                  +   +       L   + +       +  +R  D     + +   P+ +  G 
Sbjct: 351 YQASKNRLTPIEELPLAMALQGQLSHTE-----DLELRWPDRT-IPLEVWGIPIHDETGH 404

Query: 509 ILRYIGIANDI-----------------------------------TEQKKSLEGILCNA 533
           I   + +  DI                                   +E++++   +   A
Sbjct: 405 IKEGMTVFQDIHERLENARLIQQANEQLSLTVQELEAANHKLEQEASERQQAQAQLWHLA 464

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR  F+++L    +    D      V+ +D D++K +ND LG + GD +L 
Sbjct: 465 HFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIVNDSLGHSAGDVLLT 524

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+   +  P I ARL G+ FG+++    +     D A  + + I  P  +  + I 
Sbjct: 525 QVAQRLQSCIASPVIFARLGGDEFGVLVP-AQDPGYPQDLAEQLHELIVHPFEIQGQRIY 583

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKED 710
           +  SIG +  ++    + E+L++A+ AMY AK      G  + S ++S+     + ++  
Sbjct: 584 IGVSIGISFVSAQIDAAEELLRSADTAMYAAKRNPLSRGIQIFSAKLSANSLKNLALETA 643

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A++ +++ L Y PI+ L    +VG EAL +W HP+ GNI   EF+ +AE   +I ++
Sbjct: 644 LREAIKQADIDLFYQPIVDLETGALVGAEALARWFHPELGNIPPLEFVTLAERSKLIFSL 703

Query: 771 NLFMLERIARDIISWRDQANMPP--IFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
             F+LE+    I  W+    + P    + +NI+++ +   +  + ++ ++ +T  S   +
Sbjct: 704 GNFILEKACLQIHLWQQDHLITPGDFILHVNISAQQICHEDFEDWIKDILQRTEISAQNL 763

Query: 829 KLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            L  +ES V  + + +   LL  L+ +G+ L++DDFGT  S LSYL  +P +++K + S 
Sbjct: 764 MLEITESSVAEDIDQQLLKLLDELKSMGVQLSIDDFGTGYSSLSYLQRLPVNSLKIDRSF 823

Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           + ++ I +A +    ++A+ I  E  +  L ++GCD  Q  + + PL 
Sbjct: 824 IHQINLAGDNRQVAQATIALAHSFGLEVVAEGIEEESQLYWLRQLGCDMGQGYYFSKPLS 883

Query: 946 FNSILKLLK 954
              + + L+
Sbjct: 884 AADMTEFLR 892


>gi|126658801|ref|ZP_01729945.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619899|gb|EAZ90624.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 594

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 232/440 (52%), Gaps = 5/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+  K+ E +L +A  D+LT + NR  FL+R+   L     ++N    V+VID+D++K+I
Sbjct: 153 TDLLKAQEELLFHARHDSLTELANRLLFLERVDLALKRVHEENNYTFAVLVIDLDRFKRI 212

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD +LV ++R +  L+   D +ARL G+ F I+L   ++  +    A  ++ 
Sbjct: 213 NDSEGHIVGDRLLVEVSRSLETLVSPADTVARLGGDEFAILLDPIDDVNEALKVAQQVKT 272

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++     + ++E+  + SIG +       ++ E+L++A++AM  AK +G    E F    
Sbjct: 273 TLTTSFFIQDKEVFTSPSIGLSISHRKYQSAIEILQDADIAMGQAKEKGRGRYEIFNQKM 332

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++ DL   ++  E  + Y PI++L   E+VG EALI+W HP  G IS  EF
Sbjct: 333 HAQALKLLTLETDLRHGIDKEEFKVYYQPIMQLNPIELVGFEALIRWQHPYKGFISPGEF 392

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQA 816
           + +AE   +I  +   +LE++   I  W  +      + + +N +SK   D  L + +  
Sbjct: 393 IPVAENTGLIIPLGTIVLEKVCHQIKIWNKKYPHATSLKVAVNFSSKQFNDVNLVKNIDE 452

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ K   + + +K+  +E+ ++ +  ++  L+  L+K  + + LDDFGT  S LSYL   
Sbjct: 453 VLEKMNLNSNNLKIEITETSLIEHSLKTIKLVKELKKRNLEICLDDFGTGYSSLSYLHRF 512

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +      E+ + I++SII +A N+   ++A+ I  E  +  L ++ CD+
Sbjct: 513 PVDILKIDRSFINSIGQPEENLEIIQSIITLAHNLGMKVVAEGIETEEQLIYLQQLNCDF 572

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q      PL    + KLL+
Sbjct: 573 GQGYFFNRPLPPAEVEKLLE 592


>gi|167590180|ref|ZP_02382568.1| RNase II stability modulator [Burkholderia ubonensis Bu]
          Length = 667

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/568 (22%), Positives = 248/568 (43%), Gaps = 13/568 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               + G+    +     V     +V   D              + G     + G     
Sbjct: 102 ARDLAHGLAFAEQ----VVSEVNSLVVILDRNGVVQRFNRLCEEVTGRREVDVVGRSA-- 155

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                  D+        S           E  +   +    +        S S  D    
Sbjct: 156 FELFMSEDQGAQSRTNISGFFSSNKPFSVERYINTINGPRLFQFRNKFVQSGSGVDEQFL 215

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++K+ + ++  A  D LTG+PNR +  +++ T+L     D+ L+  ++ +D
Sbjct: 216 ICSGIDITEERKAQQRLIELANTDVLTGLPNRHAISEQIKTVLAGDPGDNLLQVGILFLD 275

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K++ND  G   GD +L  ++  I   L     LARL G+ F ++         +  
Sbjct: 276 LDNFKRVNDHYGHITGDRLLKDVSSIIAGCLPENATLARLGGDEFLVLFSRGTRP-LLEA 334

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + +  PI+L   E+  + SIG A +     T   ++++A+ AMY AK  G +  
Sbjct: 335 TAQVILERLRTPIHLGLMEVYTSCSIGIAMYPQHGDTLETLIRSADTAMYVAKEAGKHTY 394

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F V   +     + +  +L  A+E  +  L Y PI+ L   ++ G+EALI+W  P+ G
Sbjct: 395 RVFSVEMNQKVAKYMWLDTNLRKALEEEQFVLHYQPIVDLATGDVHGVEALIRWQSPERG 454

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            ++  EF+  AEE  +I  +  +++   A    +W+++       I IN++++ L D  +
Sbjct: 455 LVAPVEFIQFAEESGLIAPLGRWVMHTAAEQAAAWKERGLET--RIAINVSARQLQDLNI 512

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
                 ++ +    P  + +  +ES  + +   +  L+ + R +G  + LDDFGT  S L
Sbjct: 513 VRQFATILDEAGLKPGLLDIELTESCFIEDEGAALALMKQFRLLGAEIHLDDFGTGYSSL 572

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L  +P DT+K + S +TG     +  A++RS++ +A+ +  +++A+ +    +   L 
Sbjct: 573 SQLSRLPLDTIKLDRSFITGIDRNPRSQALVRSVVALARALNFSVVAEGVETRAEADFLK 632

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++  D  Q  + A P+   +  + L E+
Sbjct: 633 QIDVDQAQGYYFARPMAAQAFEQWLTEK 660


>gi|94263773|ref|ZP_01287580.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455873|gb|EAT06036.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 895

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 138/561 (24%), Positives = 250/561 (44%), Gaps = 15/561 (2%)

Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHIN 459
            ER  L   A+  S D V   D+    +   P    I G     + G     +    H  
Sbjct: 198 DERLRLQAAALQASRDGVMITDLKPAIIAVNPAFCEITGYTEEEVLGQNPNMFSSGRH-- 255

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             + F+ +      +  G  + E   R    + +  ++ I  + +       Y+G+  D+
Sbjct: 256 GHEFFQAMWSGIKTH--GHWRGEIWNRRKSGEIYPELLSISTVYDDRQQPSHYVGVKTDL 313

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  + S E +   A  D LTG+ NR     RL   L+ +   +  R  V++ ++D+++ +
Sbjct: 314 SRLRSSEEQLQYLAHHDPLTGLSNRLLLESRLEHSLERARR-ERTRLAVLLFNLDRFRLV 372

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+ LG A GD +LV + +R+ + L+  D +ARL+G+ F ++L    +  +    A   ++
Sbjct: 373 NESLGYAAGDRLLVEVIKRLQKRLRADDTMARLAGDEFVLLLEGIGDYQEAERVAGWFQE 432

Query: 640 SIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           ++A P  L    E+ +  SIG + +     T + +L  A+ A+  AK  GGN        
Sbjct: 433 ALAQPFPLPEGGEVYIQTSIGISIYPQDGETMAALLAGADAALNLAKAAGGNQFFYATAA 492

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            ++     + ++  L  A++  E  L Y P +  +   I G EALI+W  P  G +   E
Sbjct: 493 DNTRARHNLELESALRQALKKQEFLLYYQPKVNFLSGRISGAEALIRWQRPGHGLVPPGE 552

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  I  +++    R + +WR++     I +  N++++  L   L E ++ 
Sbjct: 553 FIPMAERSGLIVEIGAWVIAEACRQMRAWREEGLG-DIRLAANVSARQFLGEGLPELVRL 611

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +    P+ + L  +ES++M  PE +   +  L+++GI L LDDFGT  S  + L   
Sbjct: 612 ALDEHRVLPAHLTLELTESMLMFRPEEAISRMTALKELGIKLALDDFGTGYSSFASLSRF 671

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K +   +          +I  SII MA  +   ++A+ +  E     L R  CD 
Sbjct: 672 PIDQLKIDRGFVQALVDCPDAASIAASIIAMAHRMHLQVVAEGVENEAQCGYLRRNHCDE 731

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q      PL       LL+ 
Sbjct: 732 LQGFLFRPPLPAAEFADLLRR 752


>gi|118477933|ref|YP_895084.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118417158|gb|ABK85577.1| diguanylate cyclase/phosphodiesterase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 495

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 128/484 (26%), Positives = 233/484 (48%), Gaps = 9/484 (1%)

Query: 475 RRGRLQYEFRVRAADNQFHWMII-RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           R      + RV+  + +        I P+    G       +  DIT  K+  + I   A
Sbjct: 10  RCSSSSLQLRVKNNNEKDIHFWYVTIVPIM-IEGQTFGSYVMVKDITRMKQQQDKINYLA 68

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D +T I NR  F   L   ++ +         ++ ID++++K IND +G ++GD VL 
Sbjct: 69  FHDTVTEIGNRIFFQQELEKSIERAQKTQG-EFGLLYIDLNRFKTINDTMGHSIGDSVLK 127

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R    L     LAR+ G+ F II+ +     ++ D    + +    P  + +    
Sbjct: 128 EVAKRFRAYLSPSIPLARIGGDEFAIIVHNHTEQQQL-DLCENLFRITKKPFVVNQHSFY 186

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDL 711
           ++ SIG A +    I ++ +L++A++AMY AK +G N V  +    S   + R+ +++DL
Sbjct: 187 LSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQKVTRRLRLEQDL 246

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+EN+EL+L+Y P I     +++G EALI+W HP+ G IS  EF+ IAEE   I +I 
Sbjct: 247 PNAIENNELFLLYQPQIDSKAGKVIGAEALIRWQHPELGLISPFEFIPIAEETSQIISIG 306

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            + L+   R +  W        + + IN+++ +       + + ++I +     + I L 
Sbjct: 307 KWTLQEACRQLKEWHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIEEVGVPANSIDLE 365

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E + M + + +   L  L+  G+ L++DDFGT  S L+YL   P DT+K     +   
Sbjct: 366 LTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPIDTLKIPREFVNRI 425

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +     I+++II +A  +   +IA+ +  +  +  L +  C  IQ  + + P+  +  
Sbjct: 426 GTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLIVLQQNACYLIQGYYYSKPVNEDEF 485

Query: 950 LKLL 953
           +  L
Sbjct: 486 INFL 489


>gi|117618622|ref|YP_857831.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560029|gb|ABK36977.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 816

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/559 (22%), Positives = 254/559 (45%), Gaps = 10/559 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               + ++    + + +   D  R  ++  P  +++       + G        +H    
Sbjct: 259 DKLRQANVVFETAAEGIIIMDGQRQIISVNPAFSSMTQYEEAEIVGKSPE--AIMHPRRH 316

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +      + +         E      D  +      +  + +S  +   Y+   +DI+ 
Sbjct: 317 TDIDYPWHTLLPGSHA-WHGEMMCLRKDGGYFTSWQHVSAVHDSRHNTTNYVIAFSDISA 375

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K+   +   A+ D LT + NR    +RL   L  +  +   +  ++ ID+D +K IND
Sbjct: 376 IRKAEAQLNHLAYHDPLTELGNRNLLQERLELELKTAQLNHQ-QLALLFIDLDGFKLIND 434

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD++L  L  RI  +L+  D+ ARL G+ F +++       ++   A  +   +
Sbjct: 435 TLGHRAGDELLKLLAERIRRVLRHNDVAARLGGDEFLVLIPFFERPQELERLAEQLLACL 494

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
             P+ L    + V+ASIG A +     +   ++  A+ AMY AK+RG N    +      
Sbjct: 495 REPVELGHERVAVSASIGIALYPEHATSPDTLVSAADSAMYEAKNRGRNGYLFYTPDMTE 554

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ +++ L  A+E  +L ++Y P+  L    + GLEAL++W HP  G I  + F+ 
Sbjct: 555 QTRERMSMEQGLFKAIEQHQLCVLYQPMTELASNRMSGLEALLRWQHPSEGMIGPTRFIP 614

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I+ I  +++    +   +W       P  + IN++ +++      E + A+++
Sbjct: 615 VAEECGLIEQIGEWVMRTACQQGQAWLAAGLAVP-RLSINVSVREMRSAGYVERVAAILA 673

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T + P ++++  +ES ++   ++S  L  RL+ +G+ + +DDFGT  S LS L  +P D
Sbjct: 674 ETGFPPEKLEIEVTES-IIQRVDQSLQLFRRLKALGVQIAIDDFGTGFSSLSLLKSLPID 732

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +    + +    + R+II +A ++   + A+ I  +   + L  + C   Q 
Sbjct: 733 RIKIDRTFVQALPDDKHSRELCRTIINLADSLGMMVTAEGIETQAQRQFLQSLHCQEGQG 792

Query: 938 SHVASPLGFNSILKLLKER 956
              + PL    + + L  R
Sbjct: 793 YLFSHPLAEPHLAEQLGSR 811



 Score = 71.1 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
               +R  LA+      VW+W +  DR+     +  +LG  +    G +  ++       
Sbjct: 138 VEAQQRLQLAMSAGQIGVWEWHVTEDRLQFDGQVERLLGTTASQFQGGMEQFIKRFDPLS 197

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            + FR  ++         +         D    W+ I    ++ ++    R  G+ +D T
Sbjct: 198 GEQFRAAVN-----GTAPIHLTLGYLGPDQLRGWVDIHADHVAATDHQGRRITGVIHDAT 252

Query: 521 EQKKSLEGILCNAF 534
            +  + E  L  A 
Sbjct: 253 SR-CNQEDKLRQAN 265



 Score = 43.8 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 92/333 (27%), Gaps = 39/333 (11%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  +   +  +D      +    +A + GL+    +G    +L  I          
Sbjct: 23  LQQLFELAPFGIGVFDRHFRCRSVNQTLADLNGLSREEHYGR---YLREIVPTLAPVLEP 79

Query: 467 ILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +    +     R++       A    +         PM +  G   R + I  D+TEQ +
Sbjct: 80  LFQQIISSGVPRVELNLSGHTAAHQGRQRHWQAIYSPMLDEQGVPDRILTIVRDVTEQVE 139

Query: 525 SLEG------------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +                +  +D       R  F  ++  +L  +A+         +  
Sbjct: 140 AQQRLQLAMSAGQIGVWEWHVTED-------RLQFDGQVERLLGTTASQFQGGMEQFIKR 192

Query: 573 ID-----KYK-KIND------VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D     +++  +N        LG    D  L        + +   D   R         
Sbjct: 193 FDPLSGEQFRAAVNGTAPIHLTLGYLGPDQ-LRGWVDIHADHVAATDHQGRRITGVIHDA 251

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
               N   K+    +    +    I +  +   ++ +  F+S T  +   +E++  +  A
Sbjct: 252 TSRCNQEDKLRQANVVFETAAEGIIIMDGQRQIISVNPAFSSMTQYEE--AEIVGKSPEA 309

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           + H +           +             L  
Sbjct: 310 IMHPRRHTDIDYPWHTLLPGSHAWHGEMMCLRK 342


>gi|296505772|ref|YP_003667472.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296326824|gb|ADH09752.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 892

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 176/819 (21%), Positives = 336/819 (41%), Gaps = 70/819 (8%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
           ++ I L +  +      +    A+ + ++ YI +  GF  K +   S + L   +   I 
Sbjct: 78  VMEITLFLSSLSIHDQSIFSYKALPFFIIQYILLFVGFAIKFIKNYSIKGLSQFSFDSIF 137

Query: 261 LSSSLIIFLFMY---LHWNRWHAKVGYITFSGIACIAILFCMS-------FYYPMVTASI 310
           +    I F   +   L   R   K  +I        +++            Y     A I
Sbjct: 138 IIIMNIYFTLTFILDLSSFRMLTKDTWILIGYFIAQSLVIYAVISLYRREQYSSSRIALI 197

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
              T+  +  Y   F +  GMK       LI    ++ I    +   + K + ++     
Sbjct: 198 IGFTIILVYGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKTKY 257

Query: 371 LVGGLVLIVI-------------------------------------------------L 381
                V  ++                                                  
Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHT 317

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q        +  +    +R         D V+  ++      +     ++    
Sbjct: 318 YEQLTTQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--T 375

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +        + + +I   D +  +  L      R   L  E R +  +  ++++ I + P
Sbjct: 376 AYYCEVASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+
Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTN 492

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    V+ +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F I+L
Sbjct: 493 AN-DVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +       A  +   +  P  +   E+++T SIG A +       +E++KNA++AM
Sbjct: 552 PEMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAM 611

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G E
Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N
Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVN 730

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI ++
Sbjct: 731 LSVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ 
Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLEVIAEG 850

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  E + + L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 851 VETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 889


>gi|78484497|ref|YP_390422.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78362783|gb|ABB40748.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 632

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 123/619 (19%), Positives = 261/619 (42%), Gaps = 20/619 (3%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            +  AW+L+       +  I        +    + G+++  ++  + +++  +       
Sbjct: 23  YMFGAWLLVMGLANIQFFLIYDYFSPKFLIVPSIVGVLVGFLIAKYRILRDRIEAKQME- 81

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                    S  V  + ++ +  +I R     +P +  + G    + +     +   ++ 
Sbjct: 82  --------FSSIVDMAEEVSYFQNIDRSYRFISPSVLKLTGYDVSTFYSMPNLFSDLVYE 133

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D   +    +  +         + R+        W+    RP+   +  ++       D
Sbjct: 134 DDFPKWLA-YERSIAEGNSPEPIDVRLTTKHKGLIWIRHVSRPIYEKD-KLIAVSSTNTD 191

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+Q    E +   A +D LTG+PNR++       +L     D      ++++D+D++K 
Sbjct: 192 ITDQVSQTEAMEELALKDALTGLPNRRNLSYEAQRML-----DATYPFVLIMMDLDRFKT 246

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN+ LG +VGD +L  +  R   +L    +L+R  G+ F  I+        +        
Sbjct: 247 INESLGHSVGDLMLQKIKDRFELVLPQGAMLSRFGGDEFVFIIPGIRVEQDVEQMIRDFL 306

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K +  P++L    + ++AS G+            +L+ A++AM+ AK R G     +   
Sbjct: 307 KVVERPMHLNGLNLHISASFGWVFAPEDGKDVESLLRFADVAMHMAKQRQGVSYLRYSGQ 366

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                + ++  +  +  AVE  ++   Y P+   +  ++VG+E L +W   + G +S  E
Sbjct: 367 VDHYHQRLLVIENRIRTAVEEKQIVPFYQPMFSTVTGDLVGVECLARWHDDELGWVSPDE 426

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE++ +I  +   +LE+             +  ++  +N +   L +      +++
Sbjct: 427 FIPIAEDINLIGKLGETILEQAIITAGKLAKFCPLKDVYFSVNASPYQLSEIGFVNKVKS 486

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +    P  +K+  +ES+ +G  E +  +LG LR +G+S+ LDDFGT  S  + L   
Sbjct: 487 LLEQYDLPPKLLKIEVTESLFIGGNEYAINVLGELRALGVSIALDDFGTGYSAFAVLREG 546

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +    +     A++  II MA  +  T++A+ +  +     L  +GCD 
Sbjct: 547 CIDILKVDKSFVQNMADNDQEKALVAEIIQMAHIMNLTVVAEGVETKAQKALLAEIGCDV 606

Query: 935 IQDSHVASPLGFNSILKLL 953
           +Q   +A P+        +
Sbjct: 607 LQGYLLARPMSEVEFCPYM 625


>gi|253995502|ref|YP_003047566.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Methylotenera
           mobilis JLW8]
 gi|253982181|gb|ACT47039.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 681

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/575 (22%), Positives = 249/575 (43%), Gaps = 16/575 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V+++ +        +     +         D++   D+    +   P       +   
Sbjct: 112 LRVMRYAIERKRAELELRQSEAKVRALYEAVPDLLLFLDLEGRFLECKPAKDFQTHIEPE 171

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G   +    +     +     L+  V    G   +E+++       ++    IR   
Sbjct: 172 HFLGKTIH--EALPEGIAEQAMLCLEKVVVG-SGITSFEYQMALPQGVSNYESRFIRA-- 226

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                  + + I  DI+E K++ + +   A  D LTG+PNR  F + L      +    +
Sbjct: 227 ----SEEQVLCIVRDISESKRTQQQLHFLAHYDTLTGLPNRLLFNESLHQAQTHANRTSD 282

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               VM ID+D++K IND LG  +GD +L  +  RI   ++  D +AR+ G+ F ++L++
Sbjct: 283 T-IAVMFIDLDRFKNINDTLGHGIGDKLLQQVGNRISLCIRESDTVARMGGDEFAVVLVN 341

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  A  A  +  ++ +P  + E E+ V ASIG   +   +     +L+ A++AMYH
Sbjct: 342 VREESDAAVVAEKIIDALRLPFMVGEHEVFVGASIGITFYRPGQDDRDVLLEKADVAMYH 401

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK RG N+ + +           +  +  L  A++  E  L Y P I +    +  +E L
Sbjct: 402 AKERGRNNFQFYSSEMDAVAYERLVMENHLRHALDRKEFILYYQPQIAVDGGRVTAVETL 461

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G ++  EF+ + EE  +I  +  ++L+   +    W D     P+ + +N++
Sbjct: 462 LRWQHPDRGLVAPGEFISLLEESGLIVPVGKWVLKTSCQQGRIWYDAG--TPVRVAVNLS 519

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +      L   +  +++++   P  ++L  +ES+ M +       L +L+ +G+SL +D
Sbjct: 520 VRQFKHPGLVADVAEILAESGLPPELLELELTESMFMDSATGDVNKLTQLKALGVSLAID 579

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S L+YL   P DT+K   S +          AI  +++ +A+ +  T +A+ + 
Sbjct: 580 DFGSGASSLAYLKDFPVDTLKICQSFVLNLPHNNDDSAIASAVLGLAQAMNFTSVAEGVE 639

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +     L    CDY Q    + PL    +  LL 
Sbjct: 640 NDQQANFLRERRCDYFQGFLFSKPLPVEELDLLLS 674


>gi|302877365|ref|YP_003845929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302580154|gb|ADL54165.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1321

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 143/577 (24%), Positives = 263/577 (45%), Gaps = 26/577 (4%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            V          F   +   +    + + V   D  R   +       I G A+  M G  
Sbjct: 755  VFRESTEQSMTFDQKQTSDVIFNAASEAVMVTDANRRITSVNRAFIKITGYAAEEMIGQT 814

Query: 450  RNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L   +H     NF   + + +    G    E   R  + + +     I  +    GD
Sbjct: 815  PKLLSSGVH---TQNFYDAMYASLEA-SGYWAGEIWNRRKNGEIYPQWGSITAIFGELGD 870

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +  YI + +D+++ K++ E +   A  D+LTG+ NR  F+D L   LDL+  +   +  V
Sbjct: 871  LRSYIAVFSDVSKAKQAEEHLYHLANHDSLTGLANRSKFVDYLNHTLDLARRNRGHKVAV 930

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
              ID+D++K IND LG  +GD  L ++  RI    +  D+L+R  G+ F +++   +   
Sbjct: 931  AFIDMDRFKIINDTLGHTIGDQFLKAIATRISSQCRNEDLLSRWGGDEFVLVMDRVDGPD 990

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             +A+    M + +  P+ +   E+  T S+G + +      +++++K A+ AMY  K  G
Sbjct: 991  SVAEAVRRMMEVVRKPLLIDGHELEPTLSVGISFFPDDAQNTTDLVKAADTAMYRVKENG 1050

Query: 689  GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             N    F    +     +  I  +L  A+  +E  L Y P ++    EIVGLEALI+W+H
Sbjct: 1051 RNGYAFFTELQADESKKKFEIVSELNRALRLNEFVLNYQPQVKPDTGEIVGLEALIRWEH 1110

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            P+ G +S + F+ +AEEL MI  +  ++++ + + + +W     +    + +N+A   L 
Sbjct: 1111 PERGYLSPANFIPLAEELGMINQVGEWVIKAVCQQMSAW-KLGGVTYPRVAVNVAPSQL- 1168

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            D+ L + +Q  ++    +   +++  +E  +         +L +LR++GI+L++DDFGT 
Sbjct: 1169 DSGLADYVQRTLALYGLTADCLEIELTEGAL-ERGGEVAPVLKQLRELGITLSIDDFGTG 1227

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE-------TTIIAKD 917
             S L +L   P +  K + S + G  +  +  AI+++I+ + +N+           +A  
Sbjct: 1228 YSSLGHLKNFPINCFKIDKSFVDGLPDSVQDAAIVKTILTLGENLNVEVVVEGVETLA-- 1285

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                     LT +G   IQ      PL    I + LK
Sbjct: 1286 -----QRDFLTSIGAKIIQGYCYGKPLSVEKITERLK 1317



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +   L        +    E        S D++  +D+    +  +P   ++ G ++  M
Sbjct: 498 SLALALIEVLTHHALEQSEENYRFLTDNSSDMIARFDLDGVYIFLSPSCQSLFGFSAQHM 557

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G       +I   D   F+  L       + +    FR +   ++  W+   ++ + N 
Sbjct: 558 TGCAVT--DFIMPEDCVTFQNALLLMGSTDQAQTLL-FRSQHDRSKTVWIEYTLKRIINP 614

Query: 506 NGDILRYIGIANDITEQKKSLEGILCN 532
               +  +    D+T++      I   
Sbjct: 615 RSGAIEIVANGRDVTQRHTYQLAIEDL 641



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 79/300 (26%), Gaps = 29/300 (9%)

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
                 +    +     + + +     L  +  + +      S +        ++ +   
Sbjct: 485 SPQWTQMEIDAANSLALALIEVLTHHALEQSEENYRFLTDNSSDM--------IARFDLD 536

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW-ILIFIWFIGLWMAITKRLDN 364
                   +  S+  +    +    +  +      +     L+ +        +  R  +
Sbjct: 537 GVYIFLSPSCQSLFGFSAQHMTGCAVTDFIMPEDCVTFQNALLLMGSTDQAQTLLFRSQH 596

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ------GIFSDGERQSLAVLGSGDIV 418
           D  +   +   +  +I      I+ V      +Q       I     R +  +  +GD +
Sbjct: 597 DRSKTVWIEYTLKRIINPRSGAIEIVANGRDVTQRHTYQLAIEDLHRRNAKILEAAGDGL 656

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPI--------RNWLPYIHINDRDNFRTILDS 470
                    V T   +  ILG     + G               + +  D       L+ 
Sbjct: 657 VSISPDGKIVYTNERVRQILGWGGSELAGKSCCQLFHARDADTSHDYPCDCPLIAQNLNK 716

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            VG               + +   +      M++ +G +   + +  + TEQ  + +   
Sbjct: 717 EVGVSATGY-----FSHKEGRAIRVDYSCTQMTD-HGKLSGAVLVFRESTEQSMTFDQKQ 770


>gi|144901067|emb|CAM77931.1| sensory box protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 575

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 128/555 (23%), Positives = 245/555 (44%), Gaps = 26/555 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +    D V      R  V       T+ G A               H         
Sbjct: 38  LDAIMENIRDAVVVAGSDRVPVRVNKAFETLTGHAGEVFLRQTSADASVAH-------SQ 90

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++ +         Q E R   AD       + +  +    G    Y+ +       + + 
Sbjct: 91  LVQAIGHAGDDPWQGEIR--RADGSGLMSRVSVTAI--EAG--AHYLALL------RPAG 138

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E        D LTG+PNR  F DR+   +            ++++ +D++  +ND LG +
Sbjct: 139 EEDCKKFGHDVLTGLPNRDIFADRVDRAVLQVNRAGG-SIALLMMGLDRFTMVNDALGHS 197

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L  + RR+   ++  D   RL G++F  ++++  +       A  +  +I  P  
Sbjct: 198 AGDRLLTEVARRLRHCIRETDTAVRLEGDKFA-LVMTIADVDDSVIVAEKVLAAIKEPFA 256

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDR 704
           +  +++ VT SIG A +     T+  ++K AE A++HAK  G +  + F   +++    R
Sbjct: 257 IDGQDVVVTFSIGIALYPQDSQTAEGLIKQAENALHHAKISGRSQYQFFSKDMNNKARSR 316

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  +  A+ N E  + Y P +   +  IVG EALI+W  P  G ++  EF+ +AEE 
Sbjct: 317 LDLESRMRRALVNEEFVVFYQPKVSAENNRIVGAEALIRWIDPDKGMVNPGEFIPVAEET 376

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I+ I  ++L R  + +  W+       + + +N++++      L + +  ++++T  +
Sbjct: 377 GLIEQIGTWVLRRSCQQVREWQGMGLET-VKVSVNVSARQFKSRALLDIVTGVLAETGLA 435

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  ++L  +ES++M + E +   +  LR +G+ L++DDFGT  S LSYLG  P  T+K +
Sbjct: 436 PKWLELEITESMLMNDVEAAVKKMTALRDLGLGLSIDDFGTGYSSLSYLGRFPITTLKID 495

Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +       K   I R+II +++ +   ++A+       I+ L   GCD +Q    + 
Sbjct: 496 RAFIADVDHNPKTAEIARAIIGLSRGLNLEVVAEGCEIAAHIQFLKDNGCDTVQGFFYSR 555

Query: 943 PLGFNSILKLLKERF 957
           P+       +L + F
Sbjct: 556 PVPAEQFQAMLADGF 570


>gi|237748731|ref|ZP_04579211.1| signal transduction protein [Oxalobacter formigenes OXCC13]
 gi|229380093|gb|EEO30184.1| signal transduction protein [Oxalobacter formigenes OXCC13]
          Length = 706

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/556 (25%), Positives = 255/556 (45%), Gaps = 18/556 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR--TIL 468
           +      V         +     I  +LG    +      ++   +H  +R         
Sbjct: 154 LDEIRVGVMQLAQDTRILYANRTIKKLLGYTDETF---PVSFNDLLHPQNRKKAETVKSW 210

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY-IGIA-NDITEQKKSL 526
                Y       E  +R  D  +      I    +         I    +D    K   
Sbjct: 211 QELW-YTTSHFHIELPLRCQDGSYILTNNEISLKLDDKRKPAYALIATLPSD----KDYS 265

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D LT +P+R      L   +D SA        +++++++++K +N+ LG  
Sbjct: 266 GERRNLFLYDRLTSLPSRNYADLLLNDAIDRSAKSRQ-SFAILLLNLNRFKMVNESLGHE 324

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD++L S+  R+   L+  DI+ R+  + F ++L +  N   I   A  +  SI+ P+ 
Sbjct: 325 VGDELLKSIAIRLSTSLRKEDIVIRMGNDEFIVVLQNIRNDDNIDMIAHNLLYSISRPMK 384

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           L   ++TVTASIG + +         +LK A++AM  AK  G N    F      +    
Sbjct: 385 LAGHDLTVTASIGCSVYPRDSTEIDSLLKYADIAMIEAKRTGMNAFRFFNRDMSVTVLDQ 444

Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +  +  L  A+E  E    Y P + L   +IVGLEALI+W+HP+ G I ++EF+L AE +
Sbjct: 445 LLNETSLMRAMEKKEFLAYYQPRLSLSTGKIVGLEALIRWNHPQKGLIPAAEFILQAERI 504

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I+ I  FML+ +   ++ WR++     I + IN+AS +L D++L   ++ ++ KT  S
Sbjct: 505 GLIRRIGEFMLKTVTTQLMRWREKNKQL-IPVAINVASTELYDSDLKNALKDILDKTGLS 563

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P   +L  +E+ ++ +  + R  L  +RK+GI++++DDFGT  S LSYL  +P D +K +
Sbjct: 564 PKLFELEITETGLIEDIRKVRATLSEIRKMGITVSIDDFGTGYSSLSYLSTLPVDYLKID 623

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +      +   +I+ + I +A ++   +IA+ +  +  ++ L   GCD IQ    + 
Sbjct: 624 SSFIANVIVNKNTASIVETTINLAHSLHMQVIAEGVSTQEQLEFLVNRGCDQIQGYLCSR 683

Query: 943 PLGFNSILKLLKERFP 958
           PL  + +   L +  P
Sbjct: 684 PLSPDELDIFLDKFMP 699


>gi|172036052|ref|YP_001802553.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC
           51142]
 gi|171697506|gb|ACB50487.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC
           51142]
          Length = 594

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 229/439 (52%), Gaps = 5/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
              K+ + +L  A  D+LT + NR+ FL+R+   L     + N    V+VID+D++K IN
Sbjct: 154 ALIKAQDELLFYARHDSLTHLANRRLFLERVDLALKRVHEESNYIFAVLVIDLDRFKMIN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+ ++R +  L+   D +ARL G+ F I+L    +  +    A  ++ +
Sbjct: 214 DSDGHMVGDRLLMEVSRTLETLVSPADTVARLGGDEFAILLDPIEDVNEALRVAQEIKNT 273

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +     +  RE+  + SIG      +  ++ E+L++A++AM  AK +G    E F     
Sbjct: 274 LTTSFFIQNREVFTSPSIGLTISLPNYQSALEILRDADIAMGQAKEKGRGRYEIFNQQMH 333

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + ++ DL   +E  E  + Y PI+ L    +VG EALI+W HP  G IS  EF+
Sbjct: 334 TQALKLLTLETDLRHGIEKEEFEVYYQPIMTLNPIALVGFEALIRWQHPHKGFISPGEFI 393

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817
            +AE   +I  I   +LE++   + +W+        + + +N++S+   + +L E +  +
Sbjct: 394 PVAENTGLIIPIGKIVLEKVCYQLQTWKKNHPHTTVLKVAVNLSSQQFNNPDLVEEIDEI 453

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + KT  + + +K+  +E+ ++ +   +  LL  L++  + + LDDFGT  S LSYL   P
Sbjct: 454 LEKTGLNSNNLKIEITETSLIEHSLETIKLLKELKQRNLEICLDDFGTGYSSLSYLHRFP 513

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +    +  + + I++SIIP+A N+  T++A+ I  E  +  L ++ CD+ 
Sbjct: 514 VDTLKIDRSFVNCIGQPDENLEIIQSIIPLAHNLGMTVVAEGIETEEQLIYLQQLHCDFG 573

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q      PL      KLL+
Sbjct: 574 QGYFFNRPLPPTEAEKLLE 592


>gi|170735237|ref|YP_001774351.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
 gi|169821275|gb|ACA95856.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
          Length = 693

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 155/658 (23%), Positives = 288/658 (43%), Gaps = 17/658 (2%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
            + ++ +  A +    + S+              GY+ A+ L+   I I      LW+  
Sbjct: 39  AAQWWLVGAACVMGTGIWSMHFVGMLAFALPIPLGYDPAITLLSLLIAIVCSTGALWLVC 98

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              L    +    +     +  +    +    ++ G     +       ++AV+ SG ++
Sbjct: 99  RDTLKWRRLCGGAMLMGAGVAGMHYTGMASMRMSPGIRYDPLLVCLS-VAIAVVASGAVL 157

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           W   I R           +L L S  + G     +  +H       R +L S  G    R
Sbjct: 158 WIVFIRR----ANSSRVRLLNLGSAVLMGAA---IAGMHYTGMAAARFLLGSICGAAGSR 210

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +   +           ++     +S  +  +     +    T   ++ + +   A  DNL
Sbjct: 211 MDAGWLALVIIVATLAILAIALIVSILDLRLEARTAVLA--TSLAEANQELTYLALHDNL 268

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR    DR+   +  +  +      +M +D+D +K +ND  G  VGD +LV + RR
Sbjct: 269 TKLPNRVLLEDRIDQAIQGADREHG-SFALMFMDLDGFKAVNDAYGHHVGDLLLVDVARR 327

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           IG  L+  D +ARL G+ F  + ++ +     AD A  +   I  P  + E E+ V+ASI
Sbjct: 328 IGANLRSQDTIARLGGDEFV-LAVAVDEPADAADVADKILAVIRKPFRVAEHELRVSASI 386

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716
           G A +  +     +++ NA+ AMYHAK  G N    F  S   +  + + I ++L LA+E
Sbjct: 387 GIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCLFEASMNANVREHLKIVQELRLALE 446

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L Y P   +    I+G+EAL++W HP  G IS  +F+ IAE+  +I  I  ++L+
Sbjct: 447 RRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFISIAEKTGLIVPIGEWVLD 506

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  W D        + +N++        L   ++A + +    P  + L  +ES 
Sbjct: 507 EACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATLQRHALEPHCLTLEITEST 565

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            M + + S  +L +L  +G+ +++DDFGT  S L YL  +P   +K +   +       +
Sbjct: 566 AMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFIRDLEHDTE 625

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             AI+ +I+ + + ++  I+A+ +      + LTR+GC+ +Q   +  P+  +  +++
Sbjct: 626 DAAIISAIVALGRALDLKIVAEGVETTAQQQFLTRLGCNSLQGFLLGRPMPADHFIEM 683


>gi|117617732|ref|YP_854617.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559139|gb|ABK36087.1| MorA [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 847

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 265/564 (46%), Gaps = 21/564 (3%)

Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455
           +    E+  L         + +   D     ++  P    I G +   + G   + L   
Sbjct: 285 LKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEQITGYSEEEVCGQRPSMLKSG 344

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H  D+  +  +  +    R G  + E   +  + + +   + I  +    G I +YI I
Sbjct: 345 LH--DQAFYADMYHAL--ERVGVWRGEVWNKRKNGKLYPQQLMISTLR-EGGRISQYIAI 399

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+++ K + + I   A  DNLTG+PNR  F   L+   +        R  +MV+D++ 
Sbjct: 400 FSDLSQTKLAEQKIAAQANYDNLTGLPNRWLFGRCLSRFCER-----GERFALMVLDLNN 454

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N+ +    GD +L  ++ R+   ++  D++AR+ G+ F  ++    N  +   FA 
Sbjct: 455 FKAVNNSMDHHAGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGIVNRRQAEVFAK 514

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVES 694
            +    A P  L  + + VTA+IG        + S E+L+NAE A++ AK +G       
Sbjct: 515 QVIGGFARPFMLANQHLYVTATIGITLCPGDGLESDELLRNAEQALFAAKRQGRLLGSYC 574

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  +++DL  A++  +L + Y PI       +  LEAL++W HP WG +S 
Sbjct: 575 ASMREEVRQRHQMQQDLAEAIKLEQLTMAYQPIWDNRSGRVAKLEALVRWYHPHWGQVSP 634

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCE 812
           ++F+ +AEE  +I+ +   +L +  RD+   + Q+  P + + IN ++ +    D E  E
Sbjct: 635 ADFIPLAEEAGLIQGLGALVLWQSCRDLARLQ-QSGFPDLQMSINRSTLEFQTIDPEASE 693

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ +I      P+ I +  +ES++M   ++ R+ +  LR+ G  L +DDFGT  S L+Y
Sbjct: 694 WLK-VIHHFGLDPADIVIEITESLLMETSDQHRVRIDALREAGCKLAIDDFGTGYSALNY 752

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D VK + + +      E+   +L  II +  N+   ++ + +     +  L + 
Sbjct: 753 LRNFPVDLVKIDRAFVRHIPFNEQDRLLLDGIINIVHNLGMQVVIEGVETREQLNFLCQK 812

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           GC + Q   ++ PL ++ + + L+
Sbjct: 813 GCAFTQGYLLSRPLAYDDLTEYLQ 836



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 3/133 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  +   +   D+    + T P I  +LG +   +       L   H  D      
Sbjct: 172 LHTMMSHAPVGIGKLDLNGKILWTNPAIEKMLGYSQSELLHRTAAELN--HPEDWLRSAA 229

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             +      R     E R    D Q  W  + +  + +        + +  +I   K+  
Sbjct: 230 CYEELKRGERTAFTQEKRYLHRDGQVLWGRVTVTLVRDDQLQPDYLMVVLENIDPLKRHA 289

Query: 527 EG-ILCNAFQDNL 538
           E   L +   DNL
Sbjct: 290 EQLKLSHRVYDNL 302


>gi|91976371|ref|YP_569030.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91682827|gb|ABE39129.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisB5]
          Length = 801

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 151/809 (18%), Positives = 295/809 (36%), Gaps = 51/809 (6%)

Query: 173 IYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWV----- 227
           + +W             L  G++ G  + LA            +       +        
Sbjct: 2   LRVWNCLE-TQHDWRLLLVAGLV-GFLTSLAAVNLYQ-RARGDTERPNLSWLLTAGVVTG 58

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFMYLHWNRWHAKVGYIT 286
           V  + +     L+ L              S I  +    +          RW   VG   
Sbjct: 59  VGIWSTHFIAMLAYLPGFDFDFDFSLTIASLIVAAVMATLGLSVAAYGEARWTTVVGGGL 118

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                       ++            + +A +             +  E    L  A  L
Sbjct: 119 VGAGIAAMHFMGVTSLNFATLWDWDLVAVALLFGLSLSVGAVALAQRGETLRSLAGAAGL 178

Query: 347 IFIWFIGLWMAITKRL-----------DNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
           + +            +              I    L   + ++   I    +   L    
Sbjct: 179 LALAIGSHHFIAMGAMDVLRPIQIYDATGRISPLTLCLTIAVVTGAIAVAALLVALVDRR 238

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++ +     +  +A+   G  +  +D+             +  L +  +     +    
Sbjct: 239 SNRRVAERSMQLDVALNNMGRGLCMFDVGGRVQLFNSQYLEMYNLRASDIR-SGDDLDRL 297

Query: 456 IH--------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           +H         +D D     L + +  R   +  ++     D +   +    +P++N   
Sbjct: 298 LHLKTAVGTSPSDVDAHCGHLSAAIAER---IPADWMTALPDGRKIHV--TYQPIANG-- 350

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               ++    D TE+ ++   I   A  D LT +PNR +F   L   +  +         
Sbjct: 351 ---GWVITHEDCTERVQNRARIDFLAHHDALTQLPNRIAFDRHLEEAILRAKAT-RSSFA 406

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            + +D+D++K+INDV G   GD  L  + RR+         +AR+ G+ F I++      
Sbjct: 407 AICVDLDRFKEINDVYGHGAGDAFLRDVARRLTAA-GDGAFVARIGGDEFVIVVEKGVQP 465

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               +    + ++  +   L    +    SIG A +  +  ++ E++ NA+ A+Y  K  
Sbjct: 466 RAAEELCGRIVRAFDLDFQLKGGAVKGGCSIGVAIYPDNGSSAEELIANADAALYRVKAD 525

Query: 688 GGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                  F  +      ++ M+ ++L  AVE  +    + P +     E+VG E L +W 
Sbjct: 526 QRGSFRFFETTLDASLREKRMLHKELIEAVEAEQFEPFFQPQV-TASGEVVGFEVLGRWR 584

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +  + F+ +AEE  +I  I+  +L    R+  SW       P+ I +N++  D 
Sbjct: 585 HPNRGLVMPARFIALAEETGLISGIDEQILRAACREAASW-----DRPLSIAVNLSPIDF 639

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++   + +++ +T  SP R+ +  +E V+M +  R+   L R+R +G  L +DDFG+
Sbjct: 640 RRGDVASMILSILFETGLSPGRLNVEITEGVLMQDDGRAMSQLRRIRDLGAHLAMDDFGS 699

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFD +K +G+ +   GS  +  AI+R+II +  ++  ++IA+ +     
Sbjct: 700 GYSSLSYLQAFPFDKIKIDGTFVAQLGSNPQSRAIVRAIIGLGHSLGLSVIAEGVETNAQ 759

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
            + L  +GCD  Q   +  P    +   L
Sbjct: 760 FELLVALGCDEFQGYLIGHPAPAAAYRDL 788


>gi|228906292|ref|ZP_04070177.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
 gi|228853315|gb|EEM98087.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 200]
          Length = 689

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 252/550 (45%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 LFKGALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L  S     +   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFLKES-----INFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KECVEEIAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEKNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|94500854|ref|ZP_01307380.1| Hypothetical protein yddU [Oceanobacter sp. RED65]
 gi|94426973|gb|EAT11955.1| Hypothetical protein yddU [Oceanobacter sp. RED65]
          Length = 913

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 139/622 (22%), Positives = 280/622 (45%), Gaps = 36/622 (5%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            I   +   +          +  + I    IQ  LA       +  + +R    +  S D
Sbjct: 305 QILGIVFILLPYKQTFSQGFIDFLSILVYQIQLELAHSKDQLKLEQNTKRYRSFIQNSND 364

Query: 417 IVWD----------------WDI---VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            + D                WD+               ++  +   +    I N     H
Sbjct: 365 AILDLKIDPAMDINLDSDKQWDLILENGQVAQINQRFCSLFEVPKNADTTLILNTKSIKH 424

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                    ++   +         E R   +  +  W+          +  +     +  
Sbjct: 425 ---------VIRYILQSSNPNSNIETRFINSSGEVLWLQCTTMAEIYDD-KLFGIWLMTR 474

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DITE +  +E +      D+LTG+PNR +  + L   ++L+     L+  ++  D+D++K
Sbjct: 475 DITENRTHIERLEYKTRHDDLTGLPNRNALSELLDEKIELAKQ-FGLKVGLLFFDLDRFK 533

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++ND LG   GD +L  + +RI   L+     L RL G+ F I++ +  N+ ++ + A  
Sbjct: 534 EVNDALGHNYGDVLLKKIPQRINNYLQPINAKLCRLGGDEFAIVIPTIENTAQVLELAKD 593

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESF 695
           ++ ++    +L +  + V+AS+G + +  +      +++ A++AMY AKH  GG    S 
Sbjct: 594 IQTALRQAFDLGQLHVEVSASLGVSCYPENGSDVGTLMRCADVAMYKAKHTPGGILSYSA 653

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ I   +   ++  + +L Y P + L    +   EALI+W HP+ G IS  
Sbjct: 654 NLDEGSPRRLAIMAAINSGLKQDQFFLHYQPKMDLKTGHVTAAEALIRWQHPEMGLISPG 713

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE   +I  +  ++L++    +  ++   +   + + +N+++++LLD+ L   + 
Sbjct: 714 EFIPLAEMSDIIIDLTEWVLDQAIYQLKKFQ--LSQKDVRLSVNVSTRNLLDDNLVPYIH 771

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A + +    P +++L  +ES +M +P+R+   L +L  +G+S+++DDFGT  S L YL  
Sbjct: 772 AKLEEYDVRPQQLELEITESALMVDPDRALETLNKLSGLGLSISVDDFGTGYSSLVYLRR 831

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K +   +      ++   I+ SII +  N+  T++A+    +  ++ L  MGCD
Sbjct: 832 LPIDSLKIDLMFVRNMCRNDQDAIIVNSIINLGHNLSLTVVAEGAEDKATVEVLKTMGCD 891

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   ++ P+  +  L+LL E
Sbjct: 892 YVQGYQISKPVPEDEFLRLLDE 913


>gi|126665368|ref|ZP_01736350.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter sp. ELB17]
 gi|126629996|gb|EBA00612.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter sp. ELB17]
          Length = 756

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/570 (21%), Positives = 238/570 (41%), Gaps = 18/570 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 +      ++    V    D V          T       I         G   N
Sbjct: 184 DRITAQRKSNEQSKQMHAIVESMQDGVVTISNKGVIRTFNRGAECIFEYGRDEAIGLDVN 243

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSNSNGD 508
            L  I+  +RD     + +++    G     +              + I         GD
Sbjct: 244 VL--INTPNRDYLNKYISNYISRNTGNAIQRYHELDAINKYGTVFPIEI-GMTQMPPLGD 300

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I   + I  DIT++KK  + I   A+ D LT +PNR+   DRL  ++            +
Sbjct: 301 IDFVV-IVRDITQRKKREDEIRQLAYYDPLTRLPNRRLLKDRLQQVIANCGRQSRY-AAL 358

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D +K +ND LG   GD +L  +  R+ E ++  D ++RL G+ F +++   ++  
Sbjct: 359 FFLDLDNFKNLNDSLGRTKGDLLLCQVAARLIESVRHGDTVSRLGGDEFVVLIEGLSSDR 418

Query: 629 KIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             A   +      +   +    +L       +ASIG  ++ S+  +  ++LK A++A+Y 
Sbjct: 419 NEAAVQVEAAAGKINVQLTQKFDLDGSPYNGSASIGVTTFNSNDSSLEDLLKQADMALYK 478

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK    + V  F         +   +++DL  A+  ++  L Y   I   +  ++G+EAL
Sbjct: 479 AKAADHSSVHFFDPQMQVVASLRAAMQQDLYEALRKNQFQLHYQKQIDQHEG-LIGVEAL 537

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G IS ++F+ +AEE  +I  I  ++L    + +  W        + I +NI+
Sbjct: 538 LRWAHPTKGFISPAQFIPLAEETGLIVPIGEWVLREACQTLAQWASDPAKANLTIAVNIS 597

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                  ++   +   ++ +   P  +KL  +ES++  + E  ++ +  L++ G++ ++D
Sbjct: 598 VVQFNKKDIVHTVLNALNASGAKPHNLKLEITESLLASDVENVKVKMLELQRHGVTFSID 657

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL  +P   +K + S +     +    AI +++I +A  +   +IA+ + 
Sbjct: 658 DFGTGYSSLFYLKQLPLHQLKIDQSFVRDIINSPNDQAIAQAVITLAIAMHLNVIAEGVE 717

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            E     L  +GC   Q      P     +
Sbjct: 718 TEAQRAMLQDLGCGAYQGYLFGKPCALQDL 747



 Score = 98.1 bits (243), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 2/136 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHI 458
           I  + E     +  +    W  ++    +T     A +LG     +    R  W    H 
Sbjct: 61  ISYNEEMLKSVINANNIGTWRLNLQSGELTINEKWAHLLGYKLHELMPTDRKTWENLTHP 120

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIAN 517
            D     + L+     +    + + R++  + ++ W+  R + +S+  +G     IG   
Sbjct: 121 EDLAYCISELEKHSMGQVPAYEADIRMKHKNGEWVWINTRGQVLSSTEDGKTEWLIGTHF 180

Query: 518 DITEQKKSLEGILCNA 533
           DI ++  +       +
Sbjct: 181 DINDRITAQRKSNEQS 196



 Score = 42.6 bits (99), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +      R+     +          +W+ I   P+ ++NG     I I  DIT++K+
Sbjct: 1   MQKATAGRK-SFNVDVINYTKSGTPYWVRIACDPLWDNNGQFKGCIAIETDITKEKR 56


>gi|240137808|ref|YP_002962280.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens AM1]
 gi|240007777|gb|ACS39003.1| putative sensory box-containing diguanylate
           cyclase/phosphodiesterase; permease, PAS/PAC, GGDEF and
           EAL domains [Methylobacterium extorquens AM1]
          Length = 815

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/681 (20%), Positives = 274/681 (40%), Gaps = 17/681 (2%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
            +   I+      + + +         +AS     L   +        Y        + L
Sbjct: 129 GRGYRISAGFALALGLAWATMPVVLFCSASSDERLLVVSIAAGLISDAYVVGPLLSVSYL 188

Query: 340 L-IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL-VLIVILIGFTVIQHVLATGYFS 397
             IP  +  FI        I   +   ++  A   G+ V  +  +    I   +     S
Sbjct: 189 FAIPVIVGSFIGLARSGEPIALSIAVLLLVYATFVGVSVHRMSRLSRQRILDRVRVEDQS 248

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + I             + D +W+ +        +P +A  LG     +       L    
Sbjct: 249 ETIGLLLNEFE---ENTSDWLWETNETGRFQHVSPRMADALGCPIERLQRSSFRDLLRAG 305

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +  ++    L S +   +   +    +        W+ +  +P ++  G +  + G+ +
Sbjct: 306 EDRDEDRTPDLLSHLRQGKAFHECLVAIETPTG-LRWLALSGKPFTDQRGTLAGFRGVGS 364

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T+++++   I   A +D LTG+ NR  F D        ++     R  ++ +D+D +K
Sbjct: 365 DVTQRREADAHIAYLATRDPLTGLSNRAVFHDVAGEAC-TASMSGGPRVHLLYLDLDGFK 423

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND  G   GDD+L  +  R+   +     + RL G+ F I+ +S  ++      A A+
Sbjct: 424 KVNDTAGHCAGDDLLRQVADRLCASVDANAQVFRLGGDEFAILHLSRESAE-AEILAEAV 482

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S+  P  +   +  +  SIG A          ++++ A+LA+Y AK  G    + F  
Sbjct: 483 IASLHRPYLIEGMQAEIGVSIGIARAPQDATELQDLMRKADLALYTAKEAGRGRWQCFEA 542

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      +   +   + N E+ L Y P++ L D E+VG EAL++W  P  G +S +
Sbjct: 543 DLERRVQRWRELDSAMRAGLTNGEMELHYQPLVSLQDGEVVGCEALLRWTRPGLGPVSPA 602

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           E + IAE    +  I  + L     + ++W       P+ + +NI+S      +  + ++
Sbjct: 603 ELIPIAESTGFVITIGRWALRTACAEALTWP-----VPMRVAVNISSTHFRLPDFFQEVE 657

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A +  T  +P R+++  +ES+ + N       L  LR  G+ + LDDFGT  S LSYL  
Sbjct: 658 AALDATGLAPERLEIEITESIFLANTPHVLENLQALRAKGVRIALDDFGTGYSSLSYLTQ 717

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              D +K + + +   +   + +A++++I+ +A ++   +  + +  E   + L    C+
Sbjct: 718 YRVDKIKIDRAFVRDLSSRPECLAVIKAIMVIAGDLRIDVTVEGVETEQQAELLRLRRCN 777

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q    +       +  L++
Sbjct: 778 SAQGFLYSPARPSGEVTGLIE 798


>gi|240140829|ref|YP_002965309.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens AM1]
 gi|240010806|gb|ACS42032.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens AM1]
          Length = 817

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 151/755 (20%), Positives = 280/755 (37%), Gaps = 36/755 (4%)

Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276
                  W +     + F         L      I  A +   ++  +        L   
Sbjct: 55  FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
                +                 +       A +         L          + G  R
Sbjct: 115 AAGLVLAAAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQ 388
            + +     L         M          +           L   + L+ + +    + 
Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPATPVAGGGAVLGSTQLGLAVGLVSLAVLGAGLT 234

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L   +  +    +  R  L    + ++++        V        + G  +  + G 
Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L      D       L     +       EF VR A      + +  R + +  G 
Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-DYLGR 347

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + + + ++ +++    I   A  D LT +PNR    +RL   L+ +A +      +
Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALENAAEN-GTSVAL 405

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D++K +ND  G A GD +LV   +R+   L+  D LAR+ G+ F I+L       
Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLA 465

Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680
           ++A+ A  +  ++  P  +  +         + + AS+G A + S   T+  + + A+ A
Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y  K  G   V  F   +      R  I+ +L  A+   EL L Y PI+     EI   
Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRIEHELSGAIARGELALDYQPIVNGRTGEIEIF 585

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  ++F+ +AE+   I  I  ++L+       +W       P  + +
Sbjct: 586 EALIRWHHPERGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ K         G+ A++ +   SP R+ L  +ESV + +   +  +L  LR +G+ L
Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL    FD +K + S + G       + I+R+I  +  N+  T+  +
Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +  L  +GCD +Q    A P    ++ +
Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795


>gi|328882651|emb|CCA55890.1| putative sensory box or GGDEF family protein [Streptomyces
           venezuelae ATCC 10712]
          Length = 622

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 141/589 (23%), Positives = 265/589 (44%), Gaps = 48/589 (8%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A   +   +   D     V       ++LG    ++H    + L  +  + R     
Sbjct: 33  YHAAFRVAQLAMAVVDEDGLVVAANDSFGSLLGSEPTALHAQAASDLVDLASDGRT--WH 90

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +  RR R +   R++ AD +  W  + + P+ +S     R +    DI+++++  
Sbjct: 91  AYREVLRGRRSRFRCTRRLKHADGRSLWAEVTVAPVPDSR----RVLLSIADISDRRELQ 146

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD------------------------- 561
             +      D +T +PNR  F +RL+  L+ SA D                         
Sbjct: 147 ARLRHLQMHDPVTRLPNRALFFERLSAALEASALDAAEGVTAGSPAPGETITSSYESYGY 206

Query: 562 -DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLS 613
               R  +  +D+D +K +ND LG  VGD +L ++  R+ E              +ARL 
Sbjct: 207 GRTGRIGLCYLDLDGFKAVNDTLGHRVGDRLLAAVAARLTECADNDGYTRSGGHLVARLG 266

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I++     + ++AD A ++  ++  P +L  + ++V+ASIG    +    T++ +
Sbjct: 267 GDEFAILVEDSTGTEQLADLARSVLNALQQPFDLGGQRLSVSASIGVVERSGHGTTATAL 326

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLM 731
           ++ A+  +Y AK  G      F             +   L  AVE  E  L Y P++ L 
Sbjct: 327 MQAADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSTLRPAVERGEFTLEYQPLVELA 386

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D  + G+EAL++W+HP++G+++ + F+ IAEE   I  +  ++L    R    W+     
Sbjct: 387 DGAVRGVEALVRWNHPQFGSLAPNRFIGIAEEDGSIVELGRWVLRTACRQARQWQKDRPR 446

Query: 792 P-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             PIF+ +N+A + + D++L   +  ++++T  +P  ++L  +ES VMG+  R    L  
Sbjct: 447 ERPIFVSVNVAVRQVWDSDLVADVAGILAETGLAPHLLQLELTESAVMGSAGRPLQALQA 506

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG------STEKRIAILRSIIP 904
           L  +G+ + +DDFGT  S L+YL  +P   +K +GS + G      +      I+ +++ 
Sbjct: 507 LSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFQDEEHANPADELIVEALVQ 566

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A  +  T+ A+ +        L R+GCD  Q    +  +  + I +L+
Sbjct: 567 LAHRLGLTVTAECVETAGQASRLRRIGCDTGQGWLYSRAVAPDRIAELI 615


>gi|311696871|gb|ADP99744.1| LOW QUALITY PROTEIN: diguanylate cyclase/phosphodiesterase [marine
           bacterium HP15]
          Length = 709

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 125/554 (22%), Positives = 249/554 (44%), Gaps = 17/554 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
           +     S + +   D     +   P  + I G +   + G          H      +R+
Sbjct: 143 ASVFDRSHEAILITDQSNRILDVNPAFSRITGYSRQEVLGLNPAILSSGRHSG--AYYRS 200

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +  +    +    + E   R  + +    ++ I  +         ++   +DIT  K   
Sbjct: 201 MWRTI--EKTDHWRGEIWNRRKNGEEFVELLSISRVHLEEPGQYYHVAAFSDITALKNHA 258

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A  D+LTG+PNRQ   +RL T    +        +V  +D+D +K IND  G +
Sbjct: 259 RELDRAANYDDLTGLPNRQLLEERLRTARSHADRQHR-SVSVCYLDLDGFKGINDKWGQS 317

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  L +L  R+   L+  D +AR+ G+ F ++L  ++N   +      +  ++  P+ 
Sbjct: 318 AGDQTLRTLAERLTRALRSGDTVARIGGDEFVLLLQGDDNHEAVYQ---RILATVGDPVT 374

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + ++ +++TAS+G   +      +  ++++A+ AMY AK +G N    F       R +R
Sbjct: 375 VGDQNVSLTASLGITRYPEDGSDAEGLIRHADQAMYSAKEKGRNQYHLFDPGLDEHRRNR 434

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
                ++  A+EN E  L   P   +       +   I+W+HP+ G +S  EF+ I E  
Sbjct: 435 RNQLMEISRALENEEFELFSSP-RSVSRIANFSVLRRIRWNHPQKGLVSPGEFLPIVENS 493

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-Y 823
            +   +  ++L+     + +W++      + I INI++  L+D    + +++ +      
Sbjct: 494 HLEVPLGQWVLKEAIHQMNAWKEAG--ENLAISINISAPHLMDRSFADYLESYLHSHPEV 551

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P +I L   ES  + + +R+  +L R + +G+ + LDDFGT  S L+YL  +P D +K 
Sbjct: 552 APGQITLEVLESTALEDTQRASNVLARCQSLGLQVALDDFGTGFSSLTYLRTLPVDIIKI 611

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +          AI+ S+I +A+     ++A+ +      + L +MGC+++Q   +A
Sbjct: 612 DQSFVRNMLEDAGDRAIVESVIFLAQRFAHPVLAEGVETMEHARTLRQMGCNFVQGYGIA 671

Query: 942 SPLGFNSILKLLKE 955
            P+    +L   ++
Sbjct: 672 RPMPAAEVLGWARK 685



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 2/128 (1%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R ++    + + +   D         P      G     + G +   + Y    D +  +
Sbjct: 18  RLAMVAAATPNFLVMLDDAGRIEWVNPSFEEHTGYQLEEVRGCLPKEVLYGPDTDPETIK 77

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            I      +R   ++ +        Q +W+     P+    G    YI I N+I+++K S
Sbjct: 78  RINQKL--HRAEIIEEDILHYTKAGQPYWVHTYCVPIGTEQGVAPGYIAIQNNISDRKNS 135

Query: 526 LEGILCNA 533
             G+   A
Sbjct: 136 ERGLRIAA 143


>gi|288942578|ref|YP_003444818.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288897950|gb|ADC63786.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 648

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 149/575 (25%), Positives = 256/575 (44%), Gaps = 17/575 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q I     R S             D              +  L     H     
Sbjct: 76  ELVQSQQRIQEALARFSSFFNTLPIAELVIDRQGLIHEANLAAQQLFHLRGTQFHQHF-- 133

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           ++  I  +D+    +  DS +      +  E R RA         + I  +++     L 
Sbjct: 134 FVRLIAESDQATVVSAWDS-LHADAAIVIPEVRFRAKGEADFIGDLHIASIASLAEGALH 192

Query: 512 YIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           Y+    D TE        +++ E +   A  D LTG+PNR  F  RL   L  +      
Sbjct: 193 YVCAIIDRTEAVRQRQRLREASERLDYLAHHDALTGLPNRAYFQSRLEQCLQRAKRYQR- 251

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  ++ +D+D++K++ND LG  VGD +L  +   +   ++  D +ARL G+ F IIL   
Sbjct: 252 RFALLFLDLDRFKEVNDTLGHHVGDALLCRVAEILSAQIRDVDTIARLGGDEFVIILEDI 311

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +    I  F   +    + P+ L  RE  VT S+G + +    +    +++ A++AMY  
Sbjct: 312 SEPRFIMHFVDRVMDDFSRPLRLEGREFFVTVSVGISLYPDDGLDLETLVRRADIAMYQT 371

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F  +      +R+ ++ DL LA++  E  L Y P + L+  E++G+EAL 
Sbjct: 372 KKSGRNGFSFFEPTMSAGAIERLHLEHDLRLAMQREEFELYYQPQVDLITGELMGVEALC 431

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +    F+ +AE+L +I  + L +LE   R +++W       P  + +N++ 
Sbjct: 432 RWRHPQLGVLLPGLFIPMAEDLGLIDELGLRILELGCRQMVAWDASGLNVP-RLAVNLSV 490

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           ++L   +L   +  ++ +T   P R++L  +ES +M + E + L L  LR +G++L +DD
Sbjct: 491 RELERLQLPAQVAEILERTGLDPRRLELEVTESKLMRHAEMAILALNALRALGVTLAIDD 550

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P + +K + S + G T      +I R+II +A  +   ++A+ I  
Sbjct: 551 FGTGYSSLSYLKRLPLNRLKIDRSFIEGLTHDVNDDSIARAIIALAHTLGLEVLAEGIEA 610

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLK 954
                 L   GC   Q    + P+    +    LK
Sbjct: 611 REQANFLFGEGCLQGQGYLYSRPMIAEELAATWLK 645


>gi|297194219|ref|ZP_06911617.1| sensory box/GGDEF family protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722525|gb|EDY66433.1| sensory box/GGDEF family protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 610

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/573 (23%), Positives = 265/573 (46%), Gaps = 24/573 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              S+      A   +   +   D     ++    +A +LG     +       L  +  
Sbjct: 31  RTASELRDYRAAFNAAQLAMAVVDHRGLVISANEALAALLGTRPTELRDRYAADLIDLAS 90

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +            +  RR R +   R++  D +  W  + + P+   +G +L  +    D
Sbjct: 91  D--ARTWHAYREVLRGRRSRFRCTRRLKHPDGRALWAEVTVSPVP-ESGTVLLSVA---D 144

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDKY 576
           I+++++    +      D +T +PNR  F +RLT  L+ S  D     R  +  +D+D +
Sbjct: 145 ISDRRELRARLRHLQMHDPVTRLPNRTLFFERLTAALESSPYDQGSTGRIGLCYLDLDGF 204

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLK-------FPDILARLSGNRFGIILISENNSLK 629
           K +ND LG  VGD +L ++  R+ E             ++ARL G+ F I++     + +
Sbjct: 205 KAVNDTLGHRVGDRLLAAVATRLAECADAGGPGHGGGHLVARLGGDEFAILVEDSTGTEQ 264

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +AD A ++  ++  P +L  + ++V+ASIG      S  +++ +++ A+  +Y AK  G 
Sbjct: 265 LADLARSVLAALQEPFDLAGQRLSVSASIGVVERAVSGTSATGLMQAADTTLYWAKEDGK 324

Query: 690 NHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    F             +   L  AVE  E  L Y P++ + D    G+EAL++W+HP
Sbjct: 325 SRWTLFDPERNAHRMTRQALSSMLRPAVERGEFTLEYQPLVGMADGVTRGVEALVRWNHP 384

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLL 806
           ++G ++ + F+ IAEE   I  +  ++L    R    W+      PP+F+ +N+A + + 
Sbjct: 385 QFGTLTPNRFVAIAEEDGSIVQLGQWVLRTACRQARQWQLDHPDVPPLFVSVNVAVRQVW 444

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D++L   +  ++++T      ++L  +ES VMG+  R    L  L  +G+ + +DDFGT 
Sbjct: 445 DSDLVADVAEILAETGLPAHLLQLELTESAVMGSAGRPLQALQALSDMGVHIAIDDFGTG 504

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG------STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            S L+YL  +P   +K +G+ + G      +      I+++++ +A  +  T+ A+ +  
Sbjct: 505 YSNLAYLSRLPVSVLKLDGTFVRGFQDEAHANPADETIVQALVELAHRLGLTVTAECVET 564

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                 L R+GCD  Q    +  +G + I ++L
Sbjct: 565 SGQASRLRRIGCDTGQGWLYSRAVGPDRIAEML 597


>gi|296105837|ref|YP_003617537.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295647738|gb|ADG23585.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 741

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 145/626 (23%), Positives = 279/626 (44%), Gaps = 27/626 (4%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W             +  +   D+I    +   +    ++     +H        +     
Sbjct: 123 WESTVNTLGLSDNLLVLKKPFDVIAVRQLASALTQKWVLARETQKHTEFLNQLVEERTES 182

Query: 404 GER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-----GSMHGPIRNWLP 454
            ++        +  S D +   D+    V        +  +        +    +  ++ 
Sbjct: 183 LQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIIKKETSEPQLIQYMS 242

Query: 455 --YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              ++              +     ++ Y FR    + +   +    +P        +  
Sbjct: 243 TQLLNSEQHAQHVKEFSIHIDDSSMQI-YHFR----NGKV--VECCSKPHR-VGLQTVGR 294

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DITEQ +  E +   A  D LT +PNR   +DR+   +   A    ++  ++  D
Sbjct: 295 VWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARH-KMKFAILFFD 353

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K IND L    GD +L ++  R+  L++  D LARL G+ F ++  S N+  +IA 
Sbjct: 354 LDRFKMINDSLSHEAGDQLLCAVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAG 413

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + KS   P ++ ER+I +  SIG + + +   T + +L NA++AMY AK RGGN  
Sbjct: 414 VAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQF 473

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +    +   + +  ++ DL  A+ + E +L+Y P   +   EI  +EALI+W+HP+ G
Sbjct: 474 SFYTEKLNKKTNQQFQLELDLQKAIVHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQKG 533

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AE   +I  I  ++L    + I +WR    +P I +  N+ASK L   + 
Sbjct: 534 IILPLDFIPTAESSGLIVPIGEWVLRETCKQIGAWR-TMGLPEIRVACNVASKQLRQRDF 592

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ L+ +    P  ++L  +E+V++   +  +  + +L+ +G+ + LDDFGT  S L
Sbjct: 593 PAMVEDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNSSL 650

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L  +  D++K + S +     +    AI+ +II +A+++   IIA+ +  +  +K L 
Sbjct: 651 NLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKFLK 710

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
           +  C+ IQ   ++ P+    I KLL+
Sbjct: 711 KRRCNDIQGFLMSKPIPPEEIEKLLQ 736


>gi|326203562|ref|ZP_08193426.1| diguanylate cyclase/phosphodiesterase [Clostridium papyrosolvens
           DSM 2782]
 gi|325986382|gb|EGD47214.1| diguanylate cyclase/phosphodiesterase [Clostridium papyrosolvens
           DSM 2782]
          Length = 856

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 222/434 (51%), Gaps = 8/434 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S E     A  D LTG+PNR+S L+    +L+    +   +  ++ ID+D +K IND +
Sbjct: 425 QSEEKYTYLALHDILTGLPNRRSLLEDSDRLLE---GNSGKKLALLFIDMDNFKYINDTM 481

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+++   ++R+   LK   IL RLSG+ F +++    N  K  +F   + +S   
Sbjct: 482 GHEFGDELINKASQRLKTALKDFGILYRLSGDEFILLIHDIENKFKAEEFMCQILESFKD 541

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +    + +T SIG A +        +++K A++AMY AK +G N    +     ++ 
Sbjct: 542 EFEIRNSVLHITFSIGAALYPDHGNRIEDLIKCADIAMYKAKEQGKNRYVLYDKDMDKAF 601

Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R++I++ L  A+E  E  + Y P   +  +++ GLEAL++W   + GN+S  +F+ +A
Sbjct: 602 SERMIIEKLLHTAMEKGEFEVHYQPQFDIQTQKVTGLEALLRWKSSELGNVSPVKFIPVA 661

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  ++L +    I    D+     + + +NI++  +L +   + +  +I   
Sbjct: 662 EDTHLIIPLGEWVLNQACIFIKELHDKGLK-DLTVSVNISTIQILQSGFTQKIIDIIDSY 720

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  I+L  +E++++ +       L +L+ +GI + LDDFG   S L+YL  +P  T+
Sbjct: 721 KLNPECIELEITETILIESFTTVLKKLNKLKGMGIRIALDDFGKGYSSLNYLKQLPISTL 780

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    + E+   I R II + +++  TIIA+ +     ++ L +  CD IQ   
Sbjct: 781 KIDKSFIDSVSTDEEGRTITRHIITLGRSLGMTIIAEGVEYTEQLEYLKKYNCDRIQGYL 840

Query: 940 VASPLGFNSILKLL 953
            + PL    + KLL
Sbjct: 841 FSKPLPGEEVKKLL 854


>gi|330501559|ref|YP_004378428.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915845|gb|AEB56676.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 901

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 154/576 (26%), Positives = 275/576 (47%), Gaps = 21/576 (3%)

Query: 395 YFSQGIFSDGER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            F+Q + +  +R           AV  S       D         P    I   +S  + 
Sbjct: 326 QFAQVLINQEKRSVTHALYLFQRAVEQSASAFLLVDRDGRVEYVNPSFTAITLYSSDEVC 385

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   + LP +   +  +     DS +       Q EFR R  + + +W  + I  +   +
Sbjct: 386 GHRLSELPAL--ANLSDLLFDTDSSLAE-HSSWQGEFRSRRKNQEPYWGHLSISKVYGDD 442

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G++  YIGI  DITE K + + I   A+ DNLT + NR SF+  L       A       
Sbjct: 443 GELTHYIGIYEDITEAKLAQQRIERLAYTDNLTNLGNRPSFIRSLEE---RFARHTQQSL 499

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++++DID +K+IND LG   GD +L +L RR+   L     LAR + N F I+L    +
Sbjct: 500 GLLLVDIDNFKRINDSLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGC-D 558

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  + +++  P+ +  + I++T S+G A           ++K+A LA++ AK 
Sbjct: 559 QDSGLRVAHQVLQTLDKPLFVDNQLISITGSVGLAIAPDHGDDPQTLMKHAGLALHKAKA 618

Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G + V+ F    ++  + ++ ++ +L  A+  +EL + Y P + L   +++G+EAL++W
Sbjct: 619 NGKHQVQLFTEVLNAEANYKLFVENNLRRALTQNELEVFYQPKLCLKSGQLLGMEALLRW 678

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G I   +F+ +AEE  +I  I  +++ +  R +        M  + + IN++ K 
Sbjct: 679 QHPEKGMIRPDQFIGVAEETGLIIPIGKWVVRQACR-MSKQIAAIGMGELQVAINLSPKQ 737

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D +L   + A++ +    P  ++L  +ES+++   + +R  LGRL+ +G++L +DDFG
Sbjct: 738 FSDPDLVGSIAAILHEEQLDPRLLELELTESLLLEATDDTRHQLGRLKSLGLTLAMDDFG 797

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P D +K + S +      +  + I  ++I MA N++  ++A+ I    
Sbjct: 798 TGYSSLSYLKKFPIDVIKIDRSFIKDIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETGA 857

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  L R  CD  Q      P+    ++  L+ R+P
Sbjct: 858 QLGFLRRQRCDVGQGYLFDKPIPGRELIDSLR-RYP 892


>gi|254447138|ref|ZP_05060605.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
 gi|198263277|gb|EDY87555.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
          Length = 716

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/667 (20%), Positives = 272/667 (40%), Gaps = 15/667 (2%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           +    +   +   + L  +++                    IP   +    ++       
Sbjct: 48  AALQAVQDNADIGLVLLDLMMPGMSGYEVCAQLVNNPETQDIPVIAVTGGGYVQNEALEK 107

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY--FSQGIFSDGERQSLAVLGSGDI 417
             L   I         V +   +   +  ++              + ER       +   
Sbjct: 108 SFLAGAIDYIPKPINEVELFARVKVAIQLYLERRLRKVSVAKTTENEERFRTIFHEAPIG 167

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-----RTILDSFV 472
           +   D      T       ++G+A+G + G   +    +   +         R  L S +
Sbjct: 168 IAQLDSDLKIATANVSFQHLVGVATGQLVG--CSVYDLLAEQEASAASEGSARDQLGSLL 225

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +   +   RV   +  +  + ++   +    G    YI IA +ITE+K+  + +   
Sbjct: 226 AGSKTSAEVALRVEGREPVWVNLFLKA-LLQQGYGAENSYILIAENITEKKQVSDHVHEI 284

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ DNLTG  NR  F D +   +  +    + +  V+++D+D +K IND LG  VGD++L
Sbjct: 285 AYHDNLTGGANRARFQDEVARAIAHAEKASS-QFAVLILDLDYFKTINDSLGHEVGDEML 343

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + R + E ++  D+LARL G+ FG++L    +       A  +   +  PI +   E 
Sbjct: 344 KEVARTLQECIRDSDLLARLGGDEFGLLLPRVRSPQDACTVAQKVLNRMQEPICIENHEF 403

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KED 710
              ASIG + +     +   ++++A+ AMY AK  G  + + F  S  R+    +  ++D
Sbjct: 404 YAGASIGISFYPQDGESMQGLMRSADTAMYRAKELGRQNYQLFNPSMDRNVERRLDLEQD 463

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   ++  E YLVY P +      + GLEAL++W HP  G ++   F+ +AEE  +I  +
Sbjct: 464 LRRGIKEDEFYLVYQPQVDASVNRVTGLEALVRWKHPSKGTLAPHHFLELAEETGLILML 523

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++ +  +    W D    P + + +N++ +    ++L   +   +           +
Sbjct: 524 GDRLIRQAIKQSKQWLDAGMDPHVVVSVNLSLRQFQQHDLVRRLAQYLEDAQLPSKNFGI 583

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-- 888
             +ES+   +       L   R++G+ + LDDFG   S L++L Y P D +K + S +  
Sbjct: 584 EVTESINALDKSLVIAALDNFRQMGLQIALDDFGMGYSSLNHLRYFPLDALKVDRSFIVQ 643

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +     IL++II +   +   ++A+ +  +   + +  MG   IQ  + + PL   +
Sbjct: 644 ATESPVGRDILQTIIQLGNTLGLKVVAEGVETDEQHQLVQSMGGAAIQGYYYSPPLEAEA 703

Query: 949 ILKLLKE 955
           ++  L  
Sbjct: 704 VIDWLNS 710


>gi|148257311|ref|YP_001241896.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146409484|gb|ABQ37990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Bradyrhizobium sp. BTAi1]
          Length = 913

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/651 (22%), Positives = 268/651 (41%), Gaps = 20/651 (3%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
             +   ++A++       +       +  A        ++ I    + + +  R      
Sbjct: 261 TLVPTSSVATVAALLLIVVTMLLSWPHLSAARRALLVGILSITIEVVALILHDRFALVFD 320

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              L   LV     +  T +  +   G       S  ER ++     GD +   D  +  
Sbjct: 321 TALLQIALV---AYLAATALDEIDFRGLLRHVAESRFERIAM---SIGDGLVCTDKDKHI 374

Query: 428 VTTTPDIATILGLASGSMHGPIRNWL--PYIHINDR-DNFRTILDSFVGYRRGRLQYEFR 484
               P    I G  +  + G     L       +D        L + +      +++E R
Sbjct: 375 TVWNPGAVAIFGYGAEEIIGQPFARLRADRSDTDDLFPQQEAALPAPLLPGGATVEFEGR 434

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
               D +   +   +     ++G     I    DI+ +K+  E I   A  D LTG+ NR
Sbjct: 435 --RKDGEVFPVEASVSAWQGADGLQYGVI--LRDISVRKREAERIRYLAEHDTLTGLINR 490

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            +    L  +++ +      R  ++VI +D ++ IND+LG A GD VL +   R+   + 
Sbjct: 491 NTLQTELAAMIETADA-GADRLVLLVIGLDGFQHINDMLGHAFGDSVLRAAAERLRSEIG 549

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               +ARLSG+ F + + S      +A+ A  +      P+    R+  V  ++G A   
Sbjct: 550 SMGCVARLSGDEFAVAIPSSAIGGTVAELAEHVSHLFETPLEAAARQQRVKITLGVAVHP 609

Query: 665 SSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
               ++ E+L NA LA+  AK   RG + +    +      R+ ++ +L LAVE  E  L
Sbjct: 610 DGGQSADELLSNAHLALCRAKTDRRGSHMIFEPAIRQELERRLTLEAELALAVERREFEL 669

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + L    ++G EALI+W HP  G +   +F+ +     + +A+  +++    R  
Sbjct: 670 FYQPQVDLSSGRVIGAEALIRWRHPTRGLVPPGDFIPVVNTSPLSEAVATWVMATACRQA 729

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+   +   I + IN++       +L   +  L++ T  SP  I+L  +E +++ +  
Sbjct: 730 REWQLAGHE--IRVGINLSPSQFQSGDLAAFVSKLLTVTGVSPGLIELEVTEDILLHDEP 787

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900
                  RL+ +G+SL  DDFGT  + LSYL   P D +K + S +    +     AI+ 
Sbjct: 788 GVLQTFNRLQALGVSLVFDDFGTGYASLSYLKKFPLDGLKIDRSFVRDVLTQADDAAIVG 847

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           S + +++ +  ++IA+ I  +     L  +GC++ Q  H   P+      +
Sbjct: 848 STVSLSRQLNLSVIAEGIENQATADFLLALGCEHGQGYHFGKPMPAADFER 898


>gi|326317526|ref|YP_004235198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374362|gb|ADX46631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 934

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 136/598 (22%), Positives = 261/598 (43%), Gaps = 24/598 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
              AL   L    I +  T  Q  LA     +  + +  +     +    D++++ D   
Sbjct: 334 WLGALFSVLAGWFIAMQATGHQRALALAQSMTSELRTARDNLEGILQAVPDLLFELDAGG 393

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                    + +   +S +  G + +    +       F   L      +   L  ++  
Sbjct: 394 RIHYHRSARSDLSAESSQAFEGRMLD--EVLPPGVASEFMQALHEA-ESQGVSLGRQYHQ 450

Query: 486 RAADNQFHWMIIRIRPMSNSNGDI------LRYIGIANDITEQKKSLEGILCNAFQDNLT 539
                Q  W  + +        D        RY+ +A DIT ++ +   +   A+ D LT
Sbjct: 451 ETPMGQ-FWFELSVARRRGVGADAGEGGAASRYVALARDITARRDAEAAMHRMAYYDALT 509

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR+   ++L   LD +         +  ID+D +K++ND  G A GD +LV + RR+
Sbjct: 510 GLPNRRLLFEQLQAALDQA-RSGGRIGALFFIDLDNFKQLNDARGHAAGDRLLVQVARRL 568

Query: 600 GELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITV 654
             LL+    + R+ G+ F +++    N            A  +R+ +  P +L     +V
Sbjct: 569 ERLLQGFGSVVRIGGDEFVVLIPRIANGMQAGVDAAGAMAARLREGMEAPYDLGSTYYSV 628

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           TAS G   +  +  T  ++L+ A+ AMY AK  G + V  F         +R+ +++DL 
Sbjct: 629 TASTGVTLFPKAGETVEDLLREADTAMYRAKSSGAHRVRFFEADMQAAAQERLSLEQDLA 688

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ +  L +  HP +   D  + G E L++W HP  GN+S + F+ IAEE  +I  +  
Sbjct: 689 QAIADDALEIHIHPQVD-RDGAVCGGELLLRWRHPAHGNVSPARFVAIAEESGLILRLGA 747

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++ R    +           + I +N++++    ++    ++  ++ +    SR+ L  
Sbjct: 748 RVIRRACDALAQLHAAGLD--MTISVNVSARQFRQDDFVAYVRDALAYSGAPASRLILEV 805

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E++++ N + +   +  L + G+  ++DDFGT  S L+YL  +P   +K + S +  + 
Sbjct: 806 TETLLVENWQDTAQRMAELVRFGVRFSIDDFGTGYSSLAYLKRLPLYELKIDRSFVQDAP 865

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                 AI+R+I+ MA+++   ++A+ +      + L R GCD +Q    A PL    
Sbjct: 866 VNPNDAAIVRAILSMAQHLRLRVVAEGVETATQAEFLARHGCDAMQGYLYAHPLPLKE 923


>gi|256787549|ref|ZP_05525980.1| hypothetical protein SlivT_23940 [Streptomyces lividans TK24]
          Length = 605

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/582 (23%), Positives = 258/582 (44%), Gaps = 37/582 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  +   +   D     V+    + T+LG    ++ G +   L  +  +       
Sbjct: 8   YRSVFTTAPLAMAVVDAEGLVVSANDTLGTLLGTDPDALAGSVAADLVDLASD--AGTWH 65

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-------RYIGIANDI 519
                +   R RL+   R++ AD    W  + + P++   G            +    D+
Sbjct: 66  AYREVLRGHRPRLRCTRRLKRADGHSLWAQVTVEPLAGPGGSGGSGDGDAPGLLLSVADV 125

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYK 577
           + +++    +      D +T +PNR  F +RLT  L+          R  V  +D+D +K
Sbjct: 126 SARRELQARLRHLQMHDPVTRLPNRALFFERLTAALEAESYEHGGTGRIGVCYLDLDGFK 185

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKI 630
            +ND  G  VGD +L ++  R+    +          ++ARL G+ F +++     + ++
Sbjct: 186 AVNDTHGHRVGDRLLAAVAERLTRCAEEAAHARSGAPLVARLGGDEFALLVEDSTGTDQL 245

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           AD A A+  ++  P  L +R ++VTAS+G     ++  T + +++ A+  +Y AK  G  
Sbjct: 246 ADLAGAVLAALQPPFELSDRRLSVTASVGVVERHTAGTTPTALMQAADTTLYWAKADGRA 305

Query: 691 HVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F      +      +   L  A+E  E  L Y P++ + D  + G+EALI+W+HP+
Sbjct: 306 RWTLFDPERNANRMTRQALAATLRPAIERGEFALEYQPLVGMEDGRVRGVEALIRWNHPQ 365

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLD 807
           +G ++ + F+ +AEE   I  +  ++L         W+      PPIF+ +N+A + + D
Sbjct: 366 FGVLAPNRFIALAEEDGSIVPLGRWILRTACHQARRWQLAHPDEPPIFVSVNVAVRQVWD 425

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           ++L   +   + +T  +P  ++L  +ES VMG+  R   +L  L  +G+ + +DDFGT  
Sbjct: 426 SDLVADVARTLEETGLAPELLQLELTESAVMGSAGRPLQVLKALSDMGVHIAIDDFGTGY 485

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG----------------STEKRIAILRSIIPMAKNIET 911
           S L+YL  +P   +K +G+ + G                +      I+ +++ +A  +  
Sbjct: 486 SNLAYLSRLPVSVLKLDGAFVRGFQYDAVSDAAACGAGGANPADEVIVEAMVQLAHRLGL 545

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           T+ A+ +        L R+GCD  Q    + P+  + I  LL
Sbjct: 546 TVTAECVETSAQATRLRRIGCDTGQGWLYSRPVAPDRISALL 587


>gi|6759486|emb|CAB69812.1| YkoW protein [Bacillus cereus ATCC 14579]
          Length = 892

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 175/819 (21%), Positives = 336/819 (41%), Gaps = 70/819 (8%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
           ++ I L +  +      +    A+ + ++ YI +  GF  K +   S + L   +   I 
Sbjct: 78  VMEITLFLSSLSIHDQSIFSYKALPFFIIQYILLFVGFAIKFIKNYSIKGLSQFSFDSIF 137

Query: 261 LSSSLIIFLFMY---LHWNRWHAKVGYITFSGIACIAILFCMS-------FYYPMVTASI 310
           +    I F   +   L   R   K  +I        +++            Y     A I
Sbjct: 138 IIIMNIYFTLTFILDLSSFRMLTKDTWILIGYFIAQSLVIYAVISLYRREQYSSSRIALI 197

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
              T+  +  Y   F +  GMK       LI    ++ I    +   + K + ++     
Sbjct: 198 IGFTIILVYGYIHLFQLNFGMKTSAEINYLIHTASILLIGLSSILYILDKPMQHETKTKY 257

Query: 371 LVGGLVLIVI-------------------------------------------------L 381
                V  ++                                                  
Sbjct: 258 YRFDYVRFILPYFSIIITFSFIIIQPWDDKFMLIGLVLSLILLFLRQLYMWKDNQALIHT 317

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q        +  +    +R         D V+  ++      +     ++    
Sbjct: 318 YEQLTTQLEDEVEEGAFALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--T 375

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +        + + +I   D +  +  L      R   L  E R +  +  ++++ I + P
Sbjct: 376 AYYCEVASYSLVHFIDSKDHELLKKALQITKEGRPQTL--EVRTKEQEGYYYYLHITLIP 433

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               N +++   GIA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+
Sbjct: 434 TF-INKEVVGMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTN 492

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    V+ +D+D++KKIND LG  +GD +L+ + +R+   L+  DI+AR  G+ F I+L
Sbjct: 493 AN-DVAVIFLDLDRFKKINDRLGHELGDLLLIEVAKRLRGCLRSKDIVARQGGDEFTILL 551

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +       A  +   +  P  +   E+++T SIG A +       +E++KNA++AM
Sbjct: 552 PEMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAM 611

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+G E
Sbjct: 612 YRAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQIIGFE 671

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N
Sbjct: 672 ALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVN 730

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI ++
Sbjct: 731 LSVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQIS 790

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ 
Sbjct: 791 IDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKQLNLEVIAEG 850

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  E + + L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 851 VETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 889


>gi|148358488|ref|YP_001249695.1| GGDEF domain-containing sensory box protein [Legionella pneumophila
           str. Corby]
 gi|148280261|gb|ABQ54349.1| sensory box protein, GGDEF family protein, LssE [Legionella
           pneumophila str. Corby]
          Length = 741

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 145/626 (23%), Positives = 279/626 (44%), Gaps = 27/626 (4%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W             +  +   D+I    +   +    ++     +H        +     
Sbjct: 123 WESTVNTLGLSDNLLVLKKPFDVIAVRQLASALTQKWVLARETQKHTEFLNQLVEERTES 182

Query: 404 GER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-----GSMHGPIRNWLP 454
            ++        +  S D +   D+    V        +  +        +    +  ++ 
Sbjct: 183 LQQSFSLLRATIESSSDGILVVDLQGKIVDYNSQFVKLWNIPESIIKKETSEPQLIQYMS 242

Query: 455 --YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              ++              +     ++ Y FR    + +   +    +P        +  
Sbjct: 243 TQLLNSEQHAQHVKEFSIHIDDSSMQI-YHFR----NGKV--VECCSKPHR-VGLQTVGR 294

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DITEQ +  E +   A  D LT +PNR   +DR+   +   A    ++  ++  D
Sbjct: 295 VWSFRDITEQTRLKEKLEYQATHDALTNLPNRLLLIDRIEHAISGYARH-KMKFAILFFD 353

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K IND L    GD +L ++  R+  L++  D LARL G+ F ++  S N+  +IA 
Sbjct: 354 LDRFKMINDSLSHEAGDQLLCAVAERLRSLVRKEDTLARLGGDEFVMLFQSFNSEEQIAG 413

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + KS   P ++ ER+I +  SIG + + +   T + +L NA++AMY AK RGGN  
Sbjct: 414 VAQKILKSFQKPFHIAERDINIHVSIGISVYPTDGKTVNTLLSNADMAMYQAKFRGGNQF 473

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +    +   + +  ++ DL  A+ + E +L+Y P   +   EI  +EALI+W+HP+ G
Sbjct: 474 SFYTEKLNKKTNQQFQLELDLQKAIVHHEFFLLYQPQFTVNTHEIRSMEALIRWNHPQKG 533

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AE   +I  I  ++L    + I +WR    +P I +  N+ASK L   + 
Sbjct: 534 IILPLDFIPTAESSGLIVPIGEWVLRETCKQIGAWR-TMGLPEIRVACNVASKQLRQRDF 592

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ L+ +    P  ++L  +E+V++   +  +  + +L+ +G+ + LDDFGT  S L
Sbjct: 593 PAMVEDLLKEYSVEPHCLELEITENVIID--KEIQRTIKKLKSLGVLIILDDFGTGNSSL 650

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L  +  D++K + S +     +    AI+ +II +A+++   IIA+ +  +  +K L 
Sbjct: 651 NLLKQVAVDSLKIDQSFIQNISKSPGDEAIIDAIIAIAQSMNFNIIAEGVETQNQLKFLK 710

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
           +  C+ IQ   ++ P+    I KLL+
Sbjct: 711 KRRCNDIQGFLMSKPIPPEEIEKLLQ 736


>gi|27381235|ref|NP_772764.1| hypothetical protein bll6124 [Bradyrhizobium japonicum USDA 110]
 gi|27354402|dbj|BAC51389.1| bll6124 [Bradyrhizobium japonicum USDA 110]
          Length = 917

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/673 (21%), Positives = 278/673 (41%), Gaps = 21/673 (3%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
                                 + L     ++ +  + +     +     ++      + 
Sbjct: 256 ALAAESILQHRMLRWTSDAGMILGLGVICLLMMYSWRRFASGYRV----AVLIAAGAAVE 311

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +                   + I+  +    +  +   G   +   S   R ++++   G
Sbjct: 312 LTAALVQARWPFVVDTSLFHIAIIAYLTAIALDEIDFRGLLGRIAESRFHRIAMSL---G 368

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSFV 472
           D +   D         P  + I G     + G   + L  +   D   R + R      +
Sbjct: 369 DGLVCTDEDHRITVWNPGASVIFGYMPAEIIGRPFDTLCAV-PTDGDARPSMRDAARQAL 427

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G +  EF  R  + +   +         ++G   +Y  I  DI+ +K+ +E +   
Sbjct: 428 LVPGGAVVVEFEGRRKNGETFPVEASFSGWQGTDG--FQYGAILRDISVRKREVERVRYL 485

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR      LT ++  +    +    ++V+ +D +++IN++LG + GD VL
Sbjct: 486 AEHDALTGLANRNMLHAGLTGLIAAAERRSS-DVALLVLGLDGFQQINNMLGHSAGDLVL 544

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            S+  R+   +    ++ARLSG+ F I L        I  FA  + ++   P+    R+ 
Sbjct: 545 QSVAERLRAEIAGKAVVARLSGDEFAIALDCAEAGEPIVAFAERIARAFEAPLVTGTRQH 604

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKED 710
            V  SIG A +      + ++L N  LA+  AK   RG + +    +     +R+ ++ +
Sbjct: 605 RVRISIGVAVYPDGGHNADDLLSNGHLALSRAKATRRGSHVIFESAIRQELQNRLTLESE 664

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L LA +  E  L Y P +RL+D  +VG EALI+W HP  G +S  EFM +     + + I
Sbjct: 665 LALAADRGEFELFYQPQVRLVDGGLVGAEALIRWRHPVRGYVSPGEFMPVVNTSALSERI 724

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++E   R   +W  + +   + + IN++   L   +L     AL+  T  +P+ ++L
Sbjct: 725 ANWVMETACRQARAW--ELSGNSVRVAINLSPSQLQSGDLAHAAAALLGATGLTPALLEL 782

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E +++ +  R   +  R++++G+ +  DDFGT  + LSYL   P D +K + S +  
Sbjct: 783 EVTEDILLHDEGRVLDMFKRIQELGVRVLFDDFGTGYASLSYLKKFPLDGLKIDRSFVLD 842

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                   AI+ S I ++K +  T++A+ I        L  MGC+  Q      P+  ++
Sbjct: 843 LLADSDDAAIVSSTIGLSKQLGLTVVAEGIENRATADFLVSMGCEEGQGYFFGRPMPADA 902

Query: 949 ILK-LLKERFPLV 960
             +  L +   + 
Sbjct: 903 FERQFLTQPRSVT 915


>gi|262368645|ref|ZP_06061974.1| signal transduction protein [Acinetobacter johnsonii SH046]
 gi|262316323|gb|EEY97361.1| signal transduction protein [Acinetobacter johnsonii SH046]
          Length = 958

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 136/564 (24%), Positives = 273/564 (48%), Gaps = 13/564 (2%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           S+ ER  LA   +  +   ++  D     +   P    + G  +  ++G   +    +  
Sbjct: 391 SNQERLRLAASVLEQAEQGIFILDEDLRYIDVNPFFERLAGFDAAHINGK--HLFDIV-A 447

Query: 459 NDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           N + + RT  +  +G+  + G    E   +    +   + + +  +++    +  YIGI 
Sbjct: 448 NYKSHQRTTHNQIIGHLLKNGEYDGELNEKFLSGKELCIWMHLNAITDEQNRVTHYIGIV 507

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D+TE+K   + +      D LT +PNR  +  +L   L +S  D   +  ++ ++ID++
Sbjct: 508 SDLTERKLQEQRLSYLENYDTLTDLPNRFYYNYQLHQYL-VSQQDSIKQLAIIRLNIDRF 566

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + +N+ L    GD++L  + +R+        ++A L+G+ F I+    +    + +    
Sbjct: 567 RPLNEFLSNNGGDELLRQVAQRLRLTNAEALMVAHLNGDDFAIVYEVSHIRPSVQEHIDR 626

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K+ ++P ++  +E  +T S+G + +         +   AE A+  AK  GGN  + + 
Sbjct: 627 INKAFSLPFDIFGQEHIITLSMGISQYPEHGRQLDYLNNCAEQALSEAKRLGGNATKLYS 686

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           +S+     + + ++ DL LA++N+EL + Y P I   +++I G EAL++W+HP  G +  
Sbjct: 687 LSNTVALEEGIYLERDLRLAIQNNELVVYYQPKINFHNQKIYGFEALVRWNHPTKGIVPP 746

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I  I   ++ + A+ I  W        I + +N+ ++ L   +L + +
Sbjct: 747 GLFIPMAEKTSLISDIGRIVILQTAKQIKEWNKLGFD-NICVSVNVVAQQLQRGQLLKDL 805

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +   S S ++L  +ES ++ N E  + LL  ++  GI ++LDDFGT  S LSYL 
Sbjct: 806 DEALDRYKISGSSLELEITESTLVENSEAVKNLLETIKLRGIHISLDDFGTGYSSLSYLT 865

Query: 875 YIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P DT+K + S ++     K+ AI+ ++I M K +  T++A+ I  E  +  L  + CD
Sbjct: 866 DFPIDTLKIDRSFISKIGHYKQEAIVSAMIAMGKAMGMTVVAEGIETEQQLSYLQNLECD 925

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q    + PL      + L++  
Sbjct: 926 IAQGYLFSKPLPQLDATQYLRDHL 949



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 110/357 (30%), Gaps = 23/357 (6%)

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSML-----IPTFAMAWVVLGYISIDFGFLSKLV--NL 245
                +   ++ F+   + +  +            A  W+    +SI     + ++    
Sbjct: 51  SFYFNLWFFISEFILSIFWLVNTVYFNPKNHSAKHAHRWIQGICLSIGLLVAAGVICIYY 110

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
               L      +   L S+L++ +   +       ++ Y     I  I       F    
Sbjct: 111 YLPSLSGNFNYTNALLLSALLVIVTQTVCLTYLTQRISYFCLVFIPSITPYVLSQFINFD 170

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------IFIWFIGLWMAIT 359
              ++  + +  I++                + L I    L         W   L   + 
Sbjct: 171 ANHTLFHLAVNFILIVILLCANATNRINQHLSRLSIKNRELKKEAEKQVAWTDDLCKQLQ 230

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
             ++        +     ++      V +        ++ + +  E  SLA   +G   W
Sbjct: 231 NEVNKSKEIKQQLQLNNQLL---EQKVRERTFDVNQINKDLKNKQEDLSLAHAIAGIRPW 287

Query: 420 DWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           DW+I    +  T      +L  ++             IH ND   F++ + S +      
Sbjct: 288 DWNIKDRLIALTNHKQEKVLKNSTE----HQLQLQYLIHPNDIAPFKSAMKSHLRGHSDH 343

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGILCNA 533
               +RV+  + +++W+    R +S        L  +GI  DI  +K + E +   A
Sbjct: 344 YDATYRVQHNNGKWYWVHDTGRVISRDPTTQKPLHMVGIRRDIQHEKSNQERLRLAA 400


>gi|330831674|ref|YP_004394626.1| GGDEF/EAL domain-containing protein [Aeromonas veronii B565]
 gi|328806810|gb|AEB52009.1| GGDEF/EAL domain protein [Aeromonas veronii B565]
          Length = 848

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 141/575 (24%), Positives = 268/575 (46%), Gaps = 21/575 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +++        +    E+  L         + +   D     ++  P    I G +S  +
Sbjct: 275 YLMVLLENIDPLKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEQITGYSSDEV 334

Query: 446 HGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G   + L   +H  D+  +  +  +    R G  + E   +  + + +   + I  +  
Sbjct: 335 RGQRPSMLKSGLH--DQTFYADMYHAL--ERVGVWRGEVWNKRKNGKLYPQQLMISTLR- 389

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G I +YI I +D+++ K + + I   A  DNLT +PNR  F   LT   +        
Sbjct: 390 EAGKIQQYIAIFSDLSQTKVAEQKIATQANYDNLTSLPNRWLFGRCLTRFCER-----GE 444

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  +MV+D++ +K +N+ +    GD +L  ++ R+   ++  D++AR+ G+ F  ++   
Sbjct: 445 RFALMVLDLNNFKAVNNSMDHHAGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGI 504

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +   FA  +  S A P  L  + + VTA+IG          S E+L+NAE A++ A
Sbjct: 505 VTRRQAEVFAKQVIGSFARPFMLANQHLYVTATIGMTLCPVDGSESDELLRNAEQALFAA 564

Query: 685 KHRGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           K +G         +      R  +++DL  A++  +L + Y PI       +  LEAL++
Sbjct: 565 KRQGRLLGAYCSSMREEVRQRHQMQQDLAEAIKLEQLTMAYQPIWDNRSGRVAKLEALVR 624

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP WG +S +EF+ +AEE  +I+ +   +L +  RD+   + Q+  P + + IN ++ 
Sbjct: 625 WYHPHWGQVSPAEFIPLAEEAGLIQGLGALVLWQSCRDLARLQ-QSGFPDLQMSINRSTM 683

Query: 804 DLL--DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +    D E  E ++ +I      P+ I +  +ES++M + ++ R+ +  LR+ G  L +D
Sbjct: 684 EFQTIDPEASEWLK-VIQHFGLDPADIVIEITESLLMESSDQHRVRIDALREAGCKLAID 742

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P D VK + S +      E+   +L  II +  N+   ++ + + 
Sbjct: 743 DFGTGYSALNYLRTFPVDLVKIDRSFVRHIPFNEQDRMLLDGIINIVHNLGMQVVIEGVE 802

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               +  L + GC + Q   ++ PL ++ + + L+
Sbjct: 803 TREQLNFLCQKGCAFTQGYLLSRPLAYDDLTEYLQ 837



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 3/167 (1%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
              +L ++         ++      Q +          +  +   +   D+    +   P
Sbjct: 139 VMGLLRLLGPLAGRELALMLQRQLPQLLPDTPHVLQSMLFQAPVGIGKLDLTGRILWANP 198

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            I  +LG     +     + +   H  D        +      R     E R      + 
Sbjct: 199 AIEKMLGYPLDELLHRSISDIN--HPEDWQRSLECYEEIRRGERSSFTQEKRYFCKGGEI 256

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNL 538
            W  + +  + +        + +  +I   K+  E   L +   DNL
Sbjct: 257 LWGRVTVTLIRDEQQQPDYLMVLLENIDPLKRHAEQLKLSHRVYDNL 303


>gi|228911188|ref|ZP_04074993.1| Sensory box protein [Bacillus thuringiensis IBL 200]
 gi|228848364|gb|EEM93213.1| Sensory box protein [Bacillus thuringiensis IBL 200]
          Length = 735

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 271/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 178 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 235

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      +   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 236 KDHELLKRALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 292

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    V+ +D+D++KK
Sbjct: 293 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVIFLDLDRFKK 351

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ +  R+   L+  D++AR  G+ F I+L    +       A  + 
Sbjct: 352 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 411

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 412 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 471

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   ++ +L  A++ +E +L Y P +    +EI+G EALI+W HPK G +S ++
Sbjct: 472 MSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKEIIGFEALIRWKHPKLGIVSPAQ 531

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 532 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 590

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 591 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 650

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+
Sbjct: 651 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 710

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 711 IQGFFISKPVSSKDVWMLLHKK 732


>gi|209885851|ref|YP_002289708.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
 gi|209874047|gb|ACI93843.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
          Length = 825

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 158/774 (20%), Positives = 303/774 (39%), Gaps = 51/774 (6%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSM-LIPTFAMAWVVLGYISIDFGFLSKLVNLPS 247
           TL  G++ G       F+ +        +    T  M    +  + +  GF++ +    +
Sbjct: 50  TLAAGLVCGCGVWSTHFIGMLAYSPGVPITFDFTMTMVSFAVAVVMMTAGFVAAIYGERT 109

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
              L+      IA+S                   V     + I  +  L  +S    +V 
Sbjct: 110 WSSLVGGVIVGIAISVMH------------HLGIVALRMSADIVWMPDLLVLSAVCGIVF 157

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           ++++  T+          I    +     +  +I    +  I  I             ++
Sbjct: 158 STLSLFTVRQGTAITHSGIAAALLATATLSDHIIAVSAIGLIPDINTVSDEAGLSPI-VL 216

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
             ++   +V IVI      I    +  + ++         + A+      +  +      
Sbjct: 217 SISVASMMVAIVIACLIGAISDRRSRRHMNERNIQ----LNAAIQNIMQGLCMFGPDNCL 272

Query: 428 VTTTPDIATILGLASGSMH--GPIRNWLP-------YIHINDRDNFRTILDSFVGYRRGR 478
                   ++  +A   +     +             +   D      + DS       R
Sbjct: 273 QLWNDKYVSMYRIAPEDIRVGATVEELFAARKKAGTIVKELDF-YSTRLWDSVKNRESAR 331

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              E      D +   +  +       NG    ++G   DITEQ+KS   I   A  D+L
Sbjct: 332 WVLEL----VDGRTISVAYQAM----ENG---GWVGTHEDITEQRKSEARIQYLAQHDSL 380

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR +F D +  +   +A   +   T++ +DID++ +IND  G + GD  L    RR
Sbjct: 381 TGLFNRVAFNDHVRKVWQKAAAQKH-PFTILSLDIDRFSEINDTYGHSTGDAFLREAARR 439

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +         +ARL G+ F I+        +  D    +  +  M  N+    I    ++
Sbjct: 440 LQAA-CGSAFIARLGGDEFMIVSSEGEQPARAGDICTRVLTAFEMMFNIDGHAIHSGCTV 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           G + +         ++ NA +A+Y AK   RG        +     ++ ++  DL L +E
Sbjct: 499 GVSIYPQDGEDIETLISNAGVALYRAKKEERGSIRFFEPEMDRQLREKRVMLHDLDLVLE 558

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N +L L + P     D    G EAL++W HP+ G +    F+ +AEE   I AI+ ++L 
Sbjct: 559 NKQLELHFQPQADP-DGTPFGFEALVRWRHPEKGLVPPGVFVPLAEETGAIVAIDEWILR 617

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +  ++  SW       P+ I IN++      N+L   + +++ +T  +P R+++  +E V
Sbjct: 618 KACQEAASWPK-----PLSIAINVSPMSFQHNDLPGLIHSILLETGLNPKRLEIEITEGV 672

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +  R+  +L R++ +G+ + +DDFGT  S LSYL   PFD +K + + +    +   
Sbjct: 673 LVQDFSRACSILRRIKNLGVRVAMDDFGTGYSSLSYLQSFPFDKIKIDQAFVAQINKNVQ 732

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             AI+R+II + + +   +IA+ +  E+    L   GC  +Q   +  P    +
Sbjct: 733 SSAIIRAIISLGEALNLGVIAEGVETELQRDFLADAGCFEMQGYLIGRPQPIAA 786


>gi|221066625|ref|ZP_03542730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Comamonas testosteroni KF-1]
 gi|220711648|gb|EED67016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Comamonas testosteroni KF-1]
          Length = 1045

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/612 (19%), Positives = 253/612 (41%), Gaps = 51/612 (8%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             ++Q +       Q      ++    +      +   D+    V    +   + G   G 
Sbjct: 427  VLVQDISGRKRLEQMERLGHQQLRSLMQRLPVGLVMEDLDGRLVYWNEEFLRLAGY-GGK 485

Query: 445  MHGPIRNWLPYIHIN--DRDNFRTILD-------SFVGYRRGRLQ--------------- 480
                 + W   +  +  +R+                +  RR   +               
Sbjct: 486  PSVSTQQWWERMFPDTAERERVIQRWQVAKAQASRILQLRRSEHERVDGQDAPWDELATE 545

Query: 481  --------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                        +R  D     + +     ++        + +  D +++  + + +   
Sbjct: 546  AAACTVSAQTLMLRGLDGLRRPVAVSAVLQAD------GCLMVLQDQSQRMAAEQEVRRL 599

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            AF D LTG+PNR+   DRL   L ++    +    V+++DID +K  N+  G+  GD +L
Sbjct: 600  AFYDALTGLPNRRLLADRLQQALAMAQRKAHF-GGVVLLDIDNFKAFNEAYGLDQGDLLL 658

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINL 647
             S+++RI  LL     +AR  G+ F +++          + ++   A      +  PI +
Sbjct: 659  QSMSQRIRGLLPSGATIARQGGDDFVLLIEDLGGDSVAAAARLEQQADQWLNRLREPIEI 718

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705
                 ++T S+G + +   ++T  E+ + AE+AMY AK +G N    F         +R 
Sbjct: 719  GGVLRSITVSMGLSLFGEPELTGEEVQRRAEMAMYQAKSQGRNVSCFFDPQLQSALQERR 778

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             +++D+   ++  E  L Y P +     +++G E L++W HP+ G +  + F+ +AEE  
Sbjct: 779  TLEQDMRAGLQAGEFELFYQPQV--EMGKVIGAEGLLRWKHPEKGFVPPAHFIPLAEETG 836

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  +  ++L    + +  W        + + +N++ K    +   E +   +++     
Sbjct: 837  VILPLGDWVLRAACQQLAKWAKHPRYAQLVLSVNVSPKQFHQSGFVEQVLKALAEHGADA 896

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             R+KL  +E +++ + + +   + RL+  GI  +LDDFGT  S LSYL  +P D +K + 
Sbjct: 897  RRLKLELTEGMLVADVDDTIAKMMRLKSYGIGFSLDDFGTGYSSLSYLKRLPLDQLKIDR 956

Query: 886  SLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +    +     AI R+I+ +AK++   +IA+ +  +   + L  + C   Q   ++ P
Sbjct: 957  SFVRDVLTDPNDAAIARTIVALAKSLGLHVIAEGVETQAQCRFLEGIRCYAWQGYLMSPP 1016

Query: 944  LGFNSILKLLKE 955
            +       L+  
Sbjct: 1017 VPVGEFEGLVTN 1028



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 7/190 (3%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--TVIQHVLATGYFSQGIF 401
           W L F   +     + + L   ++   L+ GLVL   + G+  +         + +Q   
Sbjct: 258 WSLQFKPALSSQRRLERYLPWLVLAAGLLAGLVLAAWVSGWWQSRWSWSRRLKFSAQARQ 317

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
               R       +   V + DI     +        +LG  +  +H   R+ L  +   D
Sbjct: 318 ESDARFHAMCEQAAMGVLELDIATRSVLKVNQHFCRLLGYEAQDIH--RRSVLELVMPED 375

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +     +L+     +      EF +R+      W+ +          +  R   +  DI+
Sbjct: 376 QAQCAQLLEGLDLQQFQHNAGEFCLRSKSGAPIWVELNA--FLTGRHESRRLQVLVQDIS 433

Query: 521 EQKKSLEGIL 530
            +K+  +   
Sbjct: 434 GRKRLEQMER 443


>gi|167648745|ref|YP_001686408.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Caulobacter sp. K31]
 gi|167351175|gb|ABZ73910.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caulobacter sp. K31]
          Length = 807

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 152/784 (19%), Positives = 301/784 (38%), Gaps = 49/784 (6%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAM--AWVVLGYISIDFGFLSKLVNLPSGELL---- 251
           VA L+            S M      +  AW++L  +    G  +               
Sbjct: 19  VAGLICFAACFTAFRLYSRMRGAKGVVRGAWLLLTGLVSGSGVWATHFVAMVAYDPGLKT 78

Query: 252 -IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
                 + ++L  S++     +   +   ++        I  + +               
Sbjct: 79  GYSPTGTLLSLMISVMFMAGGFAVASAQRSRTNDFAGGLILGMGVAAMHYTGMSAFVTQG 138

Query: 311 ARIT---LASIVLYYTYFIIYHGMKGYERAVLLI----PAWILIFIWF----IGLWMAIT 359
                    +  +          ++   RA  L+       +L         IG+     
Sbjct: 139 FVQWEQATIAASVLAGVIGATAALQLAGRARSLLKQIGGGVLLTLGVCSLHFIGMGAITI 198

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI---FSDGERQSLAVLGSGD 416
                  +   ++ G +L + +   T +  +   G  +       S  +R       + +
Sbjct: 199 VPDPAINVPDQMLSGAILTLAVTSITGMIILGGLGAVAIESSTSRSALDRIRRLANAAYE 258

Query: 417 IVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            +    I    +         + G    ++ G   + L               +  +   
Sbjct: 259 GIVV--IQDGLINDANAAFCELAGAELDALVGAPLSNLLTFDGEAPSREGARREGALQPV 316

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR--YIGIANDITEQKKSLEGILCNA 533
            G             +   +    R M +          +    D+ E++ + E I   A
Sbjct: 317 DG------------GRQIPIEAFSRLMDDGARQETSGLTVLAVRDLRERRSAEEKIRYLA 364

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR S   RL   LD          +++ ID+D +K+ ND+ G   GD +LV
Sbjct: 365 EHDGLTGLPNRNSLQTRLAAALDRVEASGE-SLSLICIDLDHFKEANDLHGHLAGDALLV 423

Query: 594 SLTRRIGELLKFPDILARLSGNRFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              RR+ + +  P   ARL G+ F ++ + + +     A+ A  + +++A P     +++
Sbjct: 424 ETARRLQDSVTAPSFAARLGGDEFIVVQVAAGDQPAAAAELAGHLLEALAAPAVYEGQDL 483

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
            + AS+G + +     T+  +L NA++A+Y AK  G      F+        +R  +  +
Sbjct: 484 VMGASLGVSLFPDDGRTAEALLANADMALYRAKESGRGAYRFFKREMDESIRERRTMARE 543

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ + EL + Y P+    D  + G EAL++W+HP  G I   EF+ +AEE  +I  +
Sbjct: 544 LRQAIIDEELIVYYQPLATASDGVVCGFEALVRWNHPVRGMIPPLEFIPVAEENGLIGQL 603

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L R   D ++W       P+ I +N++   L   +L + +  ++ +T  SP R++L
Sbjct: 604 GEWVLRRACADAVTWER-----PLRIAVNLSPLQLNQPDLPKLVHEVLVQTGLSPKRLEL 658

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +  + +R+   L RL+ +G+ + +DDFGT  S LS L   PFD +K + S +  
Sbjct: 659 EITESALFKDYQRALDNLRRLKALGVRIAMDDFGTGFSSLSTLQSFPFDKIKIDKSFVEN 718

Query: 891 STEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                 A  I+R+++ + +++E   +A+ +  +  I  L    C  +Q   +  P   ++
Sbjct: 719 IHRHDRATVIVRAVLGLGRSLEIPCVAEGVETQEQIDFLRGEDCAELQGYAIGRPAPVDT 778

Query: 949 ILKL 952
           +   
Sbjct: 779 LSAW 782


>gi|218680985|ref|ZP_03528882.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 894]
          Length = 501

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 272/501 (54%), Positives = 361/501 (72%), Gaps = 2/501 (0%)

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
           A         IIY G   Y+RA+LL+PAW L  +W  G W+ +T RLDNDIIQPAL GGL
Sbjct: 1   ALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGAWLTVTGRLDNDIIQPALGGGL 60

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           VLIV+LIGFTV+QH  A G F QG+FSD ERQSLA+ GSGD+VWDWD+ RDRV T PD++
Sbjct: 61  VLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGSGDMVWDWDVARDRVVTIPDVS 120

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +RRGRL +EFR+RA D  FHW+
Sbjct: 121 VKLGLSPGAMHGAARNWLPRLHPDDRDRFRATLDVLLEHRRGRLNHEFRIRAEDGHFHWL 180

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           +IR RP+  SNG+I+R +G   D+TEQK S+E +L +A  DNLTG+PNRQ FLDRL ++L
Sbjct: 181 LIRARPVLGSNGEIIRCVGTIVDVTEQKNSVERLLHDALHDNLTGLPNRQVFLDRLQSVL 240

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            L+   + LRPTVMVIDID+YK +ND LG+A GD++L++LTRR+  LLK  D LARL+G+
Sbjct: 241 ALAPGGETLRPTVMVIDIDRYKLVNDALGVAAGDNILIALTRRLRRLLKPQDTLARLAGD 300

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           +FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TAS+G ASW   + +++ +L 
Sbjct: 301 QFGLILVSEHNPAKVADFADAISKAIMVPINFANREIILTASVGLASWVDRQESATGLLS 360

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  EL +VY PI RL D 
Sbjct: 361 DAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERKELSMVYQPIARLEDV 420

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E+ G EAL++W+HPK GNI  SEF+ IAE   +I  + +F LE+   D++SW++Q    P
Sbjct: 421 EVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQATNDLMSWQNQTGELP 480

Query: 794 IFILINIASKDLLDNELCEGM 814
           IF+ IN++S  LL+NEL + +
Sbjct: 481 IFVSINLSSVQLLNNELYDDV 501


>gi|330811467|ref|YP_004355929.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379575|gb|AEA70925.1| Putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 624

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 120/491 (24%), Positives = 239/491 (48%), Gaps = 14/491 (2%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D  +  ++     E R  A+   + W +        +     +   +   I E+ + L  
Sbjct: 135 DQLLILKKPFDTLEIRQMASAMTWKWQL--------AQDAARKMRSLERTIEERVQELLK 186

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +      D LT +PN     DRLT  +      D  +  VM I +D++K+IN+ LG  VG
Sbjct: 187 VSHLLQYDVLTELPNSMLLGDRLTQAMAQCRRHDR-QLAVMFIGLDRFKRINNALGHPVG 245

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  + R +  +++  D + R   + F ++L    +  +    A  +  +I+ P  + 
Sbjct: 246 DEMLKRVARALATVVRESDSVFRYGSDEFVVVLGDVVDPQQTKGVADKLLAAISSPQPID 305

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
             +++VTAS+G + + +    +  ++K AE AM + K  G N    F   ++     +  
Sbjct: 306 GHDLSVTASLGISVYPTDGFDAVALIKKAETAMRNVKETGPNDYRFFTEDMNRRARQQQT 365

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  L L ++  E  L Y P + L   ++VG+EAL++WD P  G +  S+F+ +AE+  +
Sbjct: 366 IESGLRLGLQRKEFVLHYQPKLDLKSGKVVGVEALVRWDRPDHGLVYPSDFIPVAEDSGL 425

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++L+   +    W+ Q  M P+++ +N+++ D       EG+   + +T  +P+
Sbjct: 426 IVPLSQWVLQEACQQACRWQAQ-GMRPLYLSVNVSAIDFRQRGFVEGIARTLKETGLAPT 484

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           +++L  +ESV+M N + +  +L  ++++GI L +DDFGT  S LSYL   P D +K + S
Sbjct: 485 QLELEITESVLMQNVDTTVAILKAIKQLGIRLAIDDFGTGYSSLSYLQKFPVDVLKIDQS 544

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           ++ +II + K++   IIA+ +     ++ L +  C+ +Q  + +  +
Sbjct: 545 FVGDLSIDSNDAKLVSTIISLGKSLNLHIIAEGVETLEQLEFLKKHQCEEVQGYYFSKAV 604

Query: 945 GFNSILKLLKE 955
              +    + E
Sbjct: 605 EPQAFADWMTE 615


>gi|145301131|ref|YP_001143972.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853903|gb|ABO92224.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 848

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 140/564 (24%), Positives = 266/564 (47%), Gaps = 21/564 (3%)

Query: 400 IFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PY 455
           +    E+  L         + +   D     ++  P    I G +   + G   + L   
Sbjct: 286 LKRHAEQLKLSHRVYDNLSEAILVCDADSRIISVNPAFEQITGYSGEEVCGQRPSMLKSG 345

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H  D+  +  +  +    R G  + E   +  + + +   + I  +    G I +YIGI
Sbjct: 346 LH--DQAFYADMYHAL--ERVGVWRGEVWNKRKNGKLYPQQLMISTLR-EGGKISQYIGI 400

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D+++ K + + I   A  DNLTG+PNR  F   LT   +        R  +MV+D++ 
Sbjct: 401 FSDLSQTKLAEQKIAAQANYDNLTGLPNRWLFGRCLTRFCER-----GERFALMVLDLNN 455

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N+ +    GD +L  ++ R+   ++  D++AR+ G+ F  ++    N  +   FA 
Sbjct: 456 FKAVNNSMDHHAGDALLREVSDRLVSRVRTEDLVARIGGDEFAFLVPGIVNRRQAEVFAK 515

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVES 694
            +    A P  L  + + VTA+IG        + S E+L+NAE A++ AK +G       
Sbjct: 516 QVIGGFARPFMLANQHLYVTATIGITLCPGDGVESDELLRNAEQALFAAKRQGRLLGSYC 575

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  +++DL  A++  +L + Y PI       +  LEAL++W HP WG +S 
Sbjct: 576 ASMREEVRQRHQMQQDLAEAIKLEQLTMAYQPIWDNRSGRVAKLEALVRWYHPHWGQVSP 635

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCE 812
           ++F+ +AEE  +I+ +   +L +  RD+   + Q+  P + + IN ++ +    D E  E
Sbjct: 636 ADFIPLAEEAGLIQGLGALVLWQSCRDLARLQ-QSGFPDLQMSINRSTLEFQTIDPEASE 694

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ +I      P  I +  +ES++M   ++ R+ +  LR+ G  L +DDFGT  S L+Y
Sbjct: 695 WLK-VIHHFGLDPCDIVIEITESLLMETSDQHRVRIDALREAGCKLAIDDFGTGYSALNY 753

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D VK + + +      E+   +L  II +  N+   ++ + +     +  L + 
Sbjct: 754 LRNFPVDLVKIDRAFVRHIPFNEQDRLLLDGIINIVHNLGMQVVIEGVETREQLNFLCQK 813

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           GC + Q   ++ PL ++ +++ L+
Sbjct: 814 GCAFTQGFLLSRPLAYDDLVEYLQ 837



 Score = 81.5 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTP 432
           V+ ++ +   +    LA  +  Q + S  E        +  +   +   D+    + T P
Sbjct: 139 VMGLLRLLAPLAGRELALMFQQQPVQSQPEYHHFLHTMMSHAPVGIGKLDLDGKILWTNP 198

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            I  +LG +   +       L   H  D     +         R     E R    D Q 
Sbjct: 199 AIEKMLGYSQSELLHRTAAELN--HPEDWLRSVSCYAELKRGERTAFTQEKRYLHRDGQV 256

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNL 538
            W  + +  + + +      + +  +I   K+  E   L +   DNL
Sbjct: 257 LWGRVTVTLVRDEHLQPDYLMVVLENIDPLKRHAEQLKLSHRVYDNL 303


>gi|332306730|ref|YP_004434581.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174059|gb|AEE23313.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 797

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 147/518 (28%), Positives = 241/518 (46%), Gaps = 17/518 (3%)

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W  ++ +  +          +    GR+   F +  +            P  
Sbjct: 270 EDISTHPYWAAWVDLATQAQLGACWSQPIKAANGRVLGTFAIYHS--------KAATPTK 321

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +    I  +  +A+   E++KS + I   A  D LT +PNR    + L   LD +  +  
Sbjct: 322 DELARIEMFANVASIAIERQKSSDLIWHQANFDELTQLPNRNIMGEHLKKALDAAKRN-K 380

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  VM +D+D +K IND LG  VGD +L+   +RI   ++  D +ARL G+ F IIL  
Sbjct: 381 TQVAVMFLDLDNFKDINDTLGHGVGDALLIDCAKRISGCVRHKDTVARLGGDEFVIILND 440

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +   A  + K+I  P +L    +  +ASIG   +       + +LKNA+ AMY 
Sbjct: 441 ITEFSGLEKTAQKILKAIEQPYHLQSEIVHSSASIGITIYPDDAEDVASLLKNADQAMYG 500

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N+   +  S       R+ +  DL  A+E+ EL+LVY PI+ + +  I   EAL
Sbjct: 501 AKDIGKNNYHYYTKSMRNAALKRMTLITDLRHAIEHDELFLVYQPIVNMTNGRINKAEAL 560

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G I   +F+ IAEE  +I  I+ ++ +R+ RD + WR     P + + IN +
Sbjct: 561 IRWQHPTRGVICPDDFIPIAEETGLIIDISNWVFDRVCRDAMFWRK-TLCPDLQLSINTS 619

Query: 802 SKDLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
                D +  + + ++ ++  +   P  I L  +E+++M         L + R+ G+ + 
Sbjct: 620 PIHYTDPDRCITQWLERMLV-SRTPPQAITLEITENLLMDANASVSNKLFQFRQAGVDIA 678

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S +SYL   P D +K + S +   +E      +  +II MAK +   +IA+ 
Sbjct: 679 LDDFGTGYSSISYLKKYPTDFLKIDKSFVHSMSEVSNDKVLCEAIIVMAKKLGIEVIAEG 738

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I  E     L +MGC+Y Q      PL +     LL++
Sbjct: 739 IETEEQHYILQKMGCEYGQGYLFFKPLKYEDFNALLEK 776


>gi|226952620|ref|ZP_03823084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter sp. ATCC 27244]
 gi|226836700|gb|EEH69083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter sp. ATCC 27244]
          Length = 745

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 254/565 (44%), Gaps = 16/565 (2%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---P 454
             D ER  L       + + ++  D   + +   P    I  L    + G     +    
Sbjct: 187 RKDQERLKLSASVFEQASEGIFILDENFNYIEVNPKYEQITELDKQVILGKQLFEITKQN 246

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H     NF+  +   + +     + EF+      +  ++ + I  + +    ++ YIG
Sbjct: 247 KLH---HQNFQLSILDTLAHE-HEYEGEFQETYHSEKSCFLWMHINAVKDEQDRVINYIG 302

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D TE+K   + +      D LT +PNR  +  +L   L   A        V+ ++ID
Sbjct: 303 IVSDQTERKHQEQRLSYLTNYDTLTDLPNRFYYQQQLHQYLVNEAAIQ--HLAVIRLNID 360

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           +++ +N+++    G+++L  + +R+        ++A LS + F II         I    
Sbjct: 361 RFRTLNELVSNQAGNELLKQVAQRLRISNIDALLVAHLSADDFAIIYEMSPLHPPIHQLC 420

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++ + P  + ++E  V+ SIG A +         +  +AE A+  AK  GGN +  
Sbjct: 421 NNIVENFSQPFYIADQEYFVSVSIGVAMFPEHGRQVDNLNTHAEQALNEAKRLGGNTIRY 480

Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        +    ++ DL  A++N+EL + Y P +   D  + G EALI+W+HP  G I
Sbjct: 481 YSNERANLAAQYSDLELDLRKAIQNNELVVYYQPKMTTHDNLVNGFEALIRWEHPSKGLI 540

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AE   +I  I  F+L + A+ +  W +    P + I +NI  + +L  +L  
Sbjct: 541 MPDIFIPLAESTSLISDIGQFVLHQAAKQLQRWIE-LGYPQVHIAVNIVVQQVLRGQLLH 599

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++S+   S   ++L  +ES  + N E  + +L  L+   IS+ LDDFGT  S L+Y
Sbjct: 600 DVDTILSQYKISGHNLELEITESAFLENTETVKTVLEALKDRHISIALDDFGTGYSSLAY 659

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L   P DT+K + + ++     +  AI+ ++I M K I   ++A+ +  E     L +  
Sbjct: 660 LTEYPIDTLKIDRAFISKIGNSKQDAIVNAMIAMGKTIGLKVVAEGVETEAQRDYLQKQN 719

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD +Q    A PL      K L++ 
Sbjct: 720 CDILQGYLFAKPLTALDATKFLQQH 744



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIAT 436
           L+   V          ++ +    +  + A   +G   W+W++    V    T +  +  
Sbjct: 46  LLEQKVRDRTYDLTQMNESLEEHRQNLAFAHETAGIRPWEWNLENQTVGVTNTHSQAVKR 105

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
                              +H +D +  +  L   +     R +  +R++  + ++ W+ 
Sbjct: 106 -------DSENHYTLLHKIVHPDDIERVKNALYHHICGETLRYEETYRIKRPNGEWSWIH 158

Query: 497 IRIRPMSN--SNGDILRYIGIANDITEQKKSLEGILCNA 533
              + +     +   LR +GI  DI +++K  E +  +A
Sbjct: 159 DVGQVIQRHPEDQTPLRMVGIHRDINQERKDQERLKLSA 197


>gi|330721536|gb|EGG99571.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC2047]
          Length = 513

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 139/481 (28%), Positives = 235/481 (48%), Gaps = 15/481 (3%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           +        + +         G  L  I    DITE+KK  + I   A+ D+LT +PNR+
Sbjct: 24  QTKSGYEFPVEVAAS-FFTYEGQEL-CILSVKDITERKKQEDVIQHLAYHDSLTNLPNRR 81

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              DRL   L  +   ++L   V+ ID+D +KKIND  G + GD VL +L  RI   L+ 
Sbjct: 82  LLQDRLQQALVSANRHNHL-GAVLFIDLDNFKKINDSEGHSGGDQVLKTLAWRITNHLRA 140

Query: 606 PDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            D +AR+ G+ F ++L   +        +  D A  +   +  PI   ++ + VTASIG 
Sbjct: 141 EDTVARIGGDEFVVLLPFLSTDASVARQRAEDLANKLLGLVTRPIQTNKQPLQVTASIGV 200

Query: 661 ASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVEN 717
            ++  +    + +++  A+ AMY AK  G N V  F++S          ++  L  A+EN
Sbjct: 201 VNFPGNAKNDAEKLISFADTAMYKAKQNGRNGVVYFQMSMANDVTRKINLESRLRSALEN 260

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            EL+L + P      +++VG E L++WD P +G IS +EF+ I E   +I  I  +++ +
Sbjct: 261 KELFLNFQPQY-KGLQQLVGAEVLLRWDAPTFGLISPAEFVPILESSGLIIEIGEWVMRQ 319

Query: 778 IARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
               +  W D       + + +NI+  +   +   + + A++ +T   P  ++   +E  
Sbjct: 320 ACYQLKHWIDMNLWDSGLTLAVNISPVEFEQSGFVDQVAAILKETGVPPQYLENEITEGT 379

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
           V+ N E+    LG LR +G+ +++DDFGT  S L+YL  +P D VK + S +      E 
Sbjct: 380 VINNIEQIIETLGALRTLGVKISIDDFGTGYSSLTYLKRLPIDMVKIDQSFVKDIPGDES 439

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             AI+ +II M +++   +IA+ I     I+ L   GC   Q  +  SP+      +LL 
Sbjct: 440 AGAIINTIISMVEHLNLDVIAEGIESIEQIQYLEASGCQKFQGFYFHSPMLEIEFTQLLS 499

Query: 955 E 955
           +
Sbjct: 500 D 500


>gi|254563338|ref|YP_003070433.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270616|emb|CAX26619.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL) with
           PAS sensor [Methylobacterium extorquens DM4]
          Length = 817

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 150/755 (19%), Positives = 280/755 (37%), Gaps = 36/755 (4%)

Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276
                  W +     + F         L      I  A +   ++  +        L   
Sbjct: 55  FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
                +                 +       A +         L          + G  R
Sbjct: 115 AAGLVLATAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQ 388
            + +     L         M          +           L   + L+ + +    + 
Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPAAPVAGGGAVLGSTQLGLAVGLVSLAVLAAGLT 234

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L   +  +    +  R  L    + ++++        V        + G  +  + G 
Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L      D       L     +       EF VR A      + +  R + +  G 
Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-DYLGR 347

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + + + ++ +++    I   A  D LT +PNR    +RL   L+ +A +      +
Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALENAAEN-GTSVAL 405

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D++K +ND  G A GD +LV   +R+   L+  D LAR+ G+ F I+L       
Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLA 465

Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680
           ++A+ A  +  ++  P  +  +         + + AS+G A + S   T+  + + A+ A
Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y  K  G   V  F   +      R  ++ +L  A+   EL L Y PI+     EI   
Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRVEHELSGAIARGELALDYQPIVNGRTGEIEIF 585

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  ++F+ +AE+   I  I  ++L+       +W       P  + +
Sbjct: 586 EALIRWHHPERGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ K         G+ A++ +   SP R+ L  +ESV + +   +  +L  LR +G+ L
Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL    FD +K + S + G       + I+R+I  +  N+  T+  +
Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +  L  +GCD +Q    A P    ++ +
Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795


>gi|239787687|emb|CAX84195.1| Predicted signal transduction protein [uncultured bacterium]
          Length = 557

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/540 (24%), Positives = 248/540 (45%), Gaps = 31/540 (5%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
              +          G+    + G      W   +          IL   +         E
Sbjct: 26  GRIIKVNRAFEKTTGMTLSLVKGRNFKELWTEPL----------ILADGLTLGGPPQSGE 75

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ---DNLT 539
            R+     +     I +      + +  R + + +D+       E    +A +   D LT
Sbjct: 76  ARLEKPGGEIKHFSINLTLQEGES-EP-RLLAVLHDL-------EDTEGSATKVGLDALT 126

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR  F DR    L  +         ++++ +D++  +ND  G   GD +L  ++ R+
Sbjct: 127 GLPNRHLFHDRAEQNLLNARRAAK-SVAMLLVGLDRFSVLNDAFGHPGGDLLLKEVSERL 185

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            + ++  D  ARL+ + FG++L            A  + KS+  P ++ +RE+ +TASIG
Sbjct: 186 KKCVRGSDTAARLTSDMFGLVLP-IAAVDDSVIVAEKVLKSLREPFHIGDREVVLTASIG 244

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVEN 717
            +   +   T+  ++KNA+ AM+HAK +G +  + +   ++     R+ +++ L  A+  
Sbjct: 245 ISIHPTDADTADHLMKNADSAMHHAKAKGRDQYQFYAGEMNEKARKRLDLEQRLRRALVA 304

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P I++  + + G+EALI+W  P  G IS ++F+ +AEE  +I  I  ++L  
Sbjct: 305 GEFVLYYQPKIKIDADSLTGMEALIRWIEPGRGMISPADFIPVAEESGLIGPIGHWVLAE 364

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R   +W+D     P+ + +N+++    D  L + +Q ++  T   P  ++L  +ES++
Sbjct: 365 ACRQNKAWQDMGLK-PLRVSVNVSAHQFRDQHLIDKVQQVLRDTGIDPCWLELELTESML 423

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895
           +G+ E+    +  LR +G+ L++DDFGT  S LSYL   P  T+K + + +    +    
Sbjct: 424 VGDIEQVVSKMRDLRDLGLHLSIDDFGTGYSSLSYLARFPITTLKIDRAFVRDVETNPFT 483

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I R+II +++ +   ++A+       +  L   GCD +Q  + + PL        L+E
Sbjct: 484 AEIARAIIGLSRGLNLEVVAEGAELVEQVDFLRDNGCDMVQGFYFSKPLPPAEFEARLRE 543


>gi|146305610|ref|YP_001186075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
 gi|145573811|gb|ABP83343.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas mendocina ymp]
          Length = 907

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 158/623 (25%), Positives = 282/623 (45%), Gaps = 21/623 (3%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQG---IF 401
           L     +   + I   +   +    + G        I F   +    A    +Q      
Sbjct: 281 LGICSMLDASIRIEGEVVGVLCLEHVGGPRTWQADEIAFAGELADQFAQVLINQQKRHAT 340

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           S       AV  S       D         P    I   +S  + G   + LP +     
Sbjct: 341 SALHLFQRAVEQSASAFLLVDRDGRVEYVNPSFTAITLYSSDEVCGHRLSELPAL----- 395

Query: 462 DNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            N   +L             Q EFR R  + + +W  + I  +   +G++  YIGI  D+
Sbjct: 396 ANLSDLLFDARSSLAEHSSWQGEFRSRRKNLEPYWGHLSISKVYGDDGELTHYIGIYEDV 455

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE K + + I   A+ DNLT + NR +F+  L      S         ++++DID +K+I
Sbjct: 456 TEAKLAQQRIERLAYTDNLTNLGNRPAFIRSLEERFAHSPR---PPLGLLLVDIDNFKRI 512

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L +L RR+   L     LAR + N F I+L    +       A  + +
Sbjct: 513 NDSLGHQTGDKLLSALARRLRNSLGAKGTLARFASNEFAILLDGC-DQDCGLRVAHQVLQ 571

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           ++  P+ +  + I++T S+G A           ++K+A LA++ AK  G + V+ F    
Sbjct: 572 TLDKPLFVDNQLISITGSLGLALAPEHGDDPQTLMKHAGLALHKAKANGKHQVQLFTEAL 631

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++  + ++ ++ +L  A+  SEL + Y P + L + +++G+EAL++W HP+ G I   +F
Sbjct: 632 NAEANYKLFVENNLRRALTQSELEVFYQPKLCLKNGQLLGMEALLRWHHPEKGMIRPDQF 691

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  +++ +  R +        +  + + IN++ K   D +L   + A+
Sbjct: 692 ISVAEETGLIIPIGKWVVRQACR-MSKQIAAIGLGELQVAINLSPKQFSDPDLVGSIAAI 750

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P  ++L  +ES+++   E +R  LGRL+ +G++L +DDFGT  S LSYL   P
Sbjct: 751 LHEEQLDPRLLELELTESLLLEATEDTRHQLGRLKSLGLTLAMDDFGTGYSSLSYLKKFP 810

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      +  + I  ++I MA N++  ++A+ I     +  L R  CD  
Sbjct: 811 IDVIKIDRSFIKDIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETGAQLGFLRRQKCDVG 870

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q      P+    ++  L+ R+P
Sbjct: 871 QGYLFDKPIPGRELIDSLR-RYP 892


>gi|209964281|ref|YP_002297196.1| sensory box-containing diguanylate cyclase, putative
           [Rhodospirillum centenum SW]
 gi|209957747|gb|ACI98383.1| sensory box-containing diguanylate cyclase, putative
           [Rhodospirillum centenum SW]
          Length = 742

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 143/554 (25%), Positives = 256/554 (46%), Gaps = 11/554 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH-INDRDNF 464
                  + + V+  D+        P +  ILG   + ++   + +    +    DR   
Sbjct: 182 WRDLFENAVEGVFRMDLAGRLRAVNPALVDILGYGTADALMAAVPDGRALVAVPADRAEL 241

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R+ L      R     +E  V+ AD    W+ + +R    + G+   Y G   DI+ +++
Sbjct: 242 RSRLRGAGIVRG----FETMVQRADGDLIWVSLNLRRHLGAGGETSGYEGTLEDISHRRR 297

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +     A  D LTG+PNR   +DRL   L       +    V +ID D ++ +N+ LG
Sbjct: 298 MEQEAAHVALHDGLTGLPNRTLLVDRLAQALRRRRAGQSPGFGVFLIDCDNFRMVNNTLG 357

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A+GD +L  + RR+  LL   D LARL  + F ++             A  MR ++  P
Sbjct: 358 HALGDRMLAEIARRLSRLLGAGDTLARLGSDDFAVLCEQSWTPDLALRRAEEMRLAVMAP 417

Query: 645 INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           + +    ++  + S+        + T  E+L++  +A+++AK RG     SF  +   + 
Sbjct: 418 MEVPGHHDLFPSVSVAVVLDHGERETPDEVLRDLGIAVHYAKARGRARCISFEPAMRTAP 477

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + ++ +L  A+E  E+ L   P++ L    ++G EAL +W HP  G++S +EF+ IA
Sbjct: 478 LQALRLQTELRRALERDEIGLALQPVVDLPGRRLIGFEALARWAHPGRGSVSPTEFIPIA 537

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I A+   +L +    + SW+ + N  P+ + +N++   L   +L E +  +I+ T
Sbjct: 538 EESGLIVALGETVLRKACALLRSWQPRLNGTPLTVSVNVSPVQLARPDLFELVDGVIAAT 597

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R+KL  +E+ +  + +     L  LR+ G  + +DDFGT  S LS L  +PFD +
Sbjct: 598 GVDVRRLKLEVTETALAQDLDIVSSRLDGLRQRGFRILIDDFGTGYSSLSRLHRLPFDGL 657

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      E    I+R+++ +   +   I+A+ +      +EL RMGC   Q  H
Sbjct: 658 KVDQSFVRPMLHDEDCRNIVRTVVALGHALGVDIVAEGVEDPETGRELARMGCTSAQGYH 717

Query: 940 VASPLGFNSILKLL 953
              PL      +L+
Sbjct: 718 FGRPLSPADADRLV 731


>gi|90022222|ref|YP_528049.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89951822|gb|ABD81837.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 722

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 147/585 (25%), Positives = 266/585 (45%), Gaps = 37/585 (6%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDW----------------DIVRDR---VTTTPDIATIL 438
           + +     R    +  S D +W +                D++  R         +A I 
Sbjct: 149 RALRDSESRHRAFIASSADAIWAYELVPPVDISLPVNQQVDLIMRRALLTECNEKMARIY 208

Query: 439 GLAS-GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           G++   S+ G        + +  D   F         +       EF       +  +M+
Sbjct: 209 GVSDITSVVGRPIYLNGSMSNKEDIRRFVLNNYRVEDH-------EFTRIDKFGELGYML 261

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                +   NG ++R  G   D+T+Q++ L+ +   A  D LT +PNR      L  +L 
Sbjct: 262 SSATGVI-ENGKLMRAWGSTRDVTDQRRYLDRMRYLANHDTLTSLPNRNLLYKELERVL- 319

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGN 615
            S    N +  ++++D+D++K+IND LG   GD VL  L  R+  EL   P ++ARL G+
Sbjct: 320 -SNRSQNQKVALLLVDLDRFKEINDTLGHQAGDKVLKQLGPRLEVELGDTPGMVARLGGD 378

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L +  N       A     +IA   +L      + +SIG           S +++
Sbjct: 379 EFAILLSNIRNRQHAVVTAHRFADAIAERFDLDTFSTELQSSIGVVICPDQAEDVSTLMR 438

Query: 676 NAELAMYHAKHRGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++AMYHAK+      +         + R+ +   L  A+   +L L Y P + L    
Sbjct: 439 YADVAMYHAKNNMKAVSIYDAEYDPNSAKRLTVTGALGRAIREEQLVLFYQPKVDLKTHR 498

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EALI+W HP+ G I  S+F+ + E    I  + L++LE+  +    WRD      +
Sbjct: 499 VYGFEALIRWIHPELGFIPPSDFVPMVELSSWIYPMTLWVLEQTIKQCAMWRDAGLD--L 556

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ ++L D+ +   ++ L+ K       +++  +ES++M +P R+  +L R+ K+
Sbjct: 557 TLAMNLSPRNLADDRIVNDLEVLLKKYNVRGGMLEMEITESMLMSDPNRASRILERINKL 616

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ L++DDFGT  S L+YL  +P  T+K +GS +     +E+   I++S I +A N+   
Sbjct: 617 GVRLSIDDFGTGYSSLAYLKRLPVKTLKIDGSFIMNMLESEQDEIIVKSTIHLAHNLGLD 676

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++A+ +        L  + CD +Q  ++A P+   S+   L +  
Sbjct: 677 VVAEGVETLEVYDRLNSLECDSVQGYYIAKPMPIESVGAWLADYQ 721


>gi|312958595|ref|ZP_07773115.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor [Pseudomonas
           fluorescens WH6]
 gi|311287138|gb|EFQ65699.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC and GAF sensor [Pseudomonas
           fluorescens WH6]
          Length = 897

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 153/568 (26%), Positives = 274/568 (48%), Gaps = 17/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S +     +         P    I   ++  +HG     LP +
Sbjct: 336 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSAEEVHGHRLAQLPAL 395

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L        +    Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 396 -----ENLSELLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID
Sbjct: 451 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDSPISLLLVDID 507

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L     LAR + N F ++L  + +       A
Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSTGGSLARFASNEFAVLL-DDTDLESGQQVA 566

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I+VT S+G A           +++NA LA++ AK  G + V+ 
Sbjct: 567 SQLLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 626

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++G+EAL++W+HP+ G I
Sbjct: 627 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMI 686

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  ++  +  R +      A M  + + IN++ K   D +L  
Sbjct: 687 RPDQFISVAEETGLIIPIGKWIARQACR-MSKRLSAAGMGNLQVAINLSPKQFSDPDLVA 745

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A++ +     + ++L  +E +++   E +RL L +L+  G++L +DDFGT  S LSY
Sbjct: 746 SIAAILKEEDLPANLLELELTEGLLLEATEDTRLQLDQLKSFGLTLAMDDFGTGYSSLSY 805

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K + S +      +  + I  ++I MA N++  ++A+ I     +  L R 
Sbjct: 806 LKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRH 865

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958
            CD  Q      P+    +LK+LK R+P
Sbjct: 866 RCDVGQGYLFDRPIPGAELLKMLK-RYP 892


>gi|302560492|ref|ZP_07312834.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
 gi|302478110|gb|EFL41203.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
          Length = 630

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 138/569 (24%), Positives = 262/569 (46%), Gaps = 27/569 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  +   +   D           +A +LG    ++ G +   L  +  +       
Sbjct: 55  YRSVFTAAPLAMAVVDREGMVTGANAALAALLGHDQETLTGAVAADLVDLASD--ARTWH 112

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +  RR RL+   R++  +    W+ + + P+   +G     +    DI+++++  
Sbjct: 113 AYRELLRGRRARLRCTRRLKHPEGHALWVRVTVSPLPADDG---GVLLSVADISDRRELR 169

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLG 584
             +      D +T +PNR  F +RLT  LD          R  +  +D+D +K +ND LG
Sbjct: 170 AELRHARMHDPVTRLPNRALFFERLTAALDAESYEESGTGRIGLCYLDLDGFKAVNDTLG 229

Query: 585 IAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRFGIILISENNSLKIADFAIAM 637
             VGD +L ++  R+    +          ++ARL G+ F +++     + ++AD A ++
Sbjct: 230 HRVGDRLLAAVAERLTRCAEAAGRTRTGTPLVARLGGDEFALLVEDSTGTEQLADLAESL 289

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +I  P +L  R ++V+ASIG     ++  T + +++ A+  +Y AK  G +    F  
Sbjct: 290 LDTIQAPFDLSGRRLSVSASIGVVERHAAGTTPTALMQAADTTLYWAKADGKSRWTLFDP 349

Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               S   R  +   L  A++  E  L Y P++ + D+ + G+EAL++W HP++G ++ +
Sbjct: 350 ERNASRVTRQALASTLRPAIDRGEFALEYQPLVGMEDDRVHGVEALVRWHHPRFGTLTPN 409

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGM 814
            F+ +AEE   I  +  ++L    R    W+      PPIF+ +N+A + + D++L   +
Sbjct: 410 RFISLAEEDGSIVPLGRWVLRTACRQARDWQVAHPDEPPIFVSVNVAVRQVWDSDLVADV 469

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A + +T  +P  ++L  +ES VMG+  R    L  L  +G+ + +DDFGT  S L+YL 
Sbjct: 470 AATLEETGLAPRLLQLELTESAVMGSSGRPIQALKALSDMGVRIAIDDFGTGYSNLAYLS 529

Query: 875 YIPFDTVKFNGSLMTG----------STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +P   +K +GS + G                 I+ +++ +A  +  T+ A+ +      
Sbjct: 530 RLPVSVLKLDGSFVRGFQYEERAAAPPNPADEVIVEAMVQLAHRLGLTVTAECVETSAQA 589

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
             L R+GCD  Q    + P+  + I +LL
Sbjct: 590 TRLRRIGCDTGQGWLYSRPVSPDRISELL 618


>gi|149182248|ref|ZP_01860728.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
 gi|148850017|gb|EDL64187.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
          Length = 793

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 149/777 (19%), Positives = 304/777 (39%), Gaps = 27/777 (3%)

Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
           +     + +    L + I+IG    L     +  +          F+   + L       
Sbjct: 31  QTESILNKIIKSDLLKAILIGATFFLTNLFVVLALDQPFRSTNHLFSYIVIYLLCCIAGS 90

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIA-CIAI 295
            F  +L +  S  + ++       ++ +LII +  Y         +  +    +     +
Sbjct: 91  YFALRLTDNRSLNMGMFVLGG---IAITLIILMANYTAILILFFHLLDVKPVMVIMTFLL 147

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
              +SFY       I+R         +              A  +  A +   +    L 
Sbjct: 148 AMAISFYSLRFLLQISREAENGDTSIWVSIGSI--------ATGVALAGLPYLVAISVLP 199

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           M   +    ++        L+L+ +L     +            +    +        + 
Sbjct: 200 MIDAELSQLNLYMLPYAVELLLVWVLSVIPDMFGEQRQLENLSKVEVSEQHFQSLFNHNP 259

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D V  +D+  + ++       + G     +     +    +        +  L+ F   +
Sbjct: 260 DAVISFDLQGNFLSANDGAEHLTGYKREELL--AMSLRDIVAS---RQLQKTLNQFELTK 314

Query: 476 RGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            G  Q  E  +   D    ++ +   P+   NG I     IA DITE KK    I     
Sbjct: 315 TGISQQSELSIIKKDQSVCYVSVTGVPIQTENG-IEGVYAIAKDITESKKQSNTIDYLFH 373

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+PNR+ F+  +   +      +     +  +D  + + I D+ G  VGD VL  
Sbjct: 374 YDDLTGLPNRRMFIFEVEKAV-----REKTPFAIYSLDYGRLRTIRDLFGFKVGDRVLKE 428

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L+ R+  +L    +++R  G+    ++   + + +       + K +     +   EI +
Sbjct: 429 LSLRLLSVLPDGSVVSRFGGDEIYCLVPRVDGNNEFEPALEQLYKILDTSFFVEGHEIFM 488

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
               G + +  +      ++K A+ A         ++ E ++    R   ++++I+ +L 
Sbjct: 489 EMKAGISMFPENGEEPDLLIKCADTARASIPDNSFHNYEVYQNKLDRSTMEKIIIENELK 548

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   EL L Y P      + +VG EAL++W+HP+ G I    F+  AE+  +I  +  
Sbjct: 549 RAIGQDELVLYYQPKFNSTLKRLVGFEALVRWNHPEKGLIPPGLFIPAAEQTNLIVDLEG 608

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R +  W+       + + +NI+ +   +    E +Q ++++   S S ++   
Sbjct: 609 WVLREACRQLYVWQSTELK-GLPVSVNISQRSFANPAFLENVQDILNEQKISASLLEFEI 667

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES+ M N + +   L +L+ +GI ++LDDFGT  S LSYL  +P DT+K + S +   T
Sbjct: 668 TESMTMFNEKVTIEKLRQLKNLGIRISLDDFGTGYSSLSYLDKLPIDTIKIDKSFIDDMT 727

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + A++ +I+ +A +    +IA+ +  +  +  L  +GC  IQ  + + PL    I
Sbjct: 728 TDQSAMVSTILSIALHNGLGVIAEGVELKEQVTLLQSLGCVNIQGYYFSRPLPPEEI 784


>gi|52144765|ref|YP_082063.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
 gi|51978234|gb|AAU19784.1| sensory box/GGDEF family protein [Bacillus cereus E33L]
          Length = 689

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 246/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRNIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     +  +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NKKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   A +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVELVAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IKEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|172058717|ref|YP_001815177.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171991238|gb|ACB62160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 878

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 160/792 (20%), Positives = 321/792 (40%), Gaps = 48/792 (6%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL 250
              ++  V  L+A    I   V ++ +L   F +A V+   ++  + FL + +       
Sbjct: 104 IFYVLQSVFFLIAFIHLIHRHVTKNRLLSFIFDIAIVMTVAVTYSWYFLIRPLFDTPFAS 163

Query: 251 LIWRACSEI-----ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPM 305
                 +        +    +I ++       W+ +   +     A + +       +  
Sbjct: 164 NAEVMLAFAYPLCDIVLLFCMISIYYLFEKKEWYER-RRLFQFLFAGLLLQVGADTLFVY 222

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYER-------------------AVLLIPAWIL 346
           +T       +  I   +   ++  G+ G+                       L +P  ++
Sbjct: 223 MTTVSGDNAIRLIDPLFILGLLMIGVSGHIVSPVDSKEDRQSKQRIKVQVGKLFLPYLLV 282

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIFSDG 404
           I ++    + A      N ++    V  L+++V  IL+  +  + +      +  +    
Sbjct: 283 ILLFLTMAFYARRDEALNGLMIGCAVTILLILVRQILMILSHQELIQEIHEKADELEVSE 342

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER         D V+  D+     +  P    +    +  + G                 
Sbjct: 343 ERYKSLFTYHPDAVYSLDLKGRIESANPSFEKLTEQHAEELVGKTYRQFT---------- 392

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                     +    Q+E   + +      + +   P+   +   +   GI  DIT  ++
Sbjct: 393 --TWQQTSTDKATAQQFETIFQKSGGPDVLLNVTNIPIRVRD-RFVGMYGIGQDITTIRE 449

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   A+ D+LTG  NR  F + L  +++    D+     +  ID+D +K +ND  G
Sbjct: 450 NELKIRRLAYYDHLTGAINRTYFEEVLHHLIETEQADET--IVLCFIDLDDFKLVNDSFG 507

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L+ + +R+ E  +  D++AR  G+ F +IL +  +  +       +   +   
Sbjct: 508 HHVGDQLLIQVAKRLQEAAEPDDLVARQGGDEFTVILRNVTSDDQARCRTARLLDDLKRT 567

Query: 645 INLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF-RVSSFRS 702
             +   E+    SIG  S   +       +LK A+LAMY AK  GG  +  F  ++   S
Sbjct: 568 YAIEGIELISNPSIGAVSCRRTSEKHVVTLLKQADLAMYQAKTGGGKSIIFFEDIAEKAS 627

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ ++ +L +A+E ++L L Y P +  +  ++VG+E LI+W+HP+ G I+ ++F+ +AE
Sbjct: 628 YRLRLESELPIAIETNQLILHYQPQVDTVTYKMVGVEGLIRWNHPELGMITPNDFIPMAE 687

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  MI  +  ++L         W+D      + + +N++ +          +  LI +T 
Sbjct: 688 EAGMIIRLGEWVLREGFLQAKQWQDDGLN--LKVGLNVSMQQFHHPTFVLTLIRLIEETK 745

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+RI L  +E   + + E + L + RL+ +G ++++DDFGT  S LS L   P DT+K
Sbjct: 746 VDPTRIDLEITEVSAVEDIEETVLTMNRLKDLGFTISIDDFGTGYSSLSRLADFPIDTLK 805

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
                +          +++ SII +AK++   +IA+ +     +  L R+ C  +Q  + 
Sbjct: 806 IPREFVEKIQPATTGYSMISSIIHLAKSLHLEVIAEGVETLEQVNVLNRLECSRMQGYYF 865

Query: 941 ASPLGFNSILKL 952
             P+    I  L
Sbjct: 866 GRPMPAEQIPAL 877


>gi|218440067|ref|YP_002378396.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
 gi|218172795|gb|ACK71528.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7424]
          Length = 839

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/570 (22%), Positives = 259/570 (45%), Gaps = 13/570 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLP 454
               +    ER    V  + + +   D    ++      I  +LG     +       L 
Sbjct: 273 IESQLKFREERYEFLVEKASEGILLIDAQTKQIIDANLGICELLGYDHEEIINLNLYNLI 332

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   DR+      +  +      +  E   R  D     +  +I       G  + YI 
Sbjct: 333 AL---DREIIEAEFEQVIESSSDLID-ESLYRCQDGSLISVEAKINS-GQYRGKDIFYIS 387

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT++K+S E +   AF D LT +PNR+ F  +++  L+ +  +  L   V+ +D+D
Sbjct: 388 I-QDITDRKRSEEQMQYQAFHDPLTNLPNRKLFTQQVSLALNNAKKNQTL-LAVIFLDLD 445

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +  IN+ LG ++GD +L S  +R+   +   D +AR   + F I+L    N  +    +
Sbjct: 446 SFNHINNTLGHSIGDQLLQSFAQRLISCIPAGDTIARWGSDDFTILLPRIKNIEETVKLS 505

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +  P  +  +++ V  S+G A +         +LKNA +A+  AK +G N+ + 
Sbjct: 506 EKIFEDLKQPFRIENQQLQVKISLGIAIYPQDGEDEESLLKNAAVALTKAKEQGRNNYQF 565

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +   +S+  +  + ++  L  A+E  EL L Y P I++   E+  +EAL++W+ P+ G I
Sbjct: 566 YTPLMSAQSALLLKLENALHRALERRELSLYYQPQIKISTGEVTAMEALLRWEVPEVGFI 625

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +     ++  +I  I+ ++L+      ++W++   +P I I IN+++++     L E
Sbjct: 626 SPIKLFSQGQKTDVILQISQWILQTACEQNLAWQE-LGLPSIPISINLSNREFEQQNLVE 684

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ KT   P  ++L  +E+++  N + +R +      +G+ L LDDFG+  S + Y
Sbjct: 685 NVARVLQKTGLDPQWLELEITETILRKNLKSARQVFQDFYNLGVRLALDDFGSGFSSIGY 744

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
               PF TVK + S +          A++ +++ + K     ++A+ +     ++ L  +
Sbjct: 745 FKLFPFRTVKIHQSFIRDLRGASQEMALISALLTLGKGFNLRVVAEGVETSSQLELLKSL 804

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            C+ +Q      PL      + L ++  L 
Sbjct: 805 QCEEVQGYVYTRPLKSAEATQFLTKQLSLT 834


>gi|297559152|ref|YP_003678126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843600|gb|ADH65620.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 901

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 154/797 (19%), Positives = 300/797 (37%), Gaps = 43/797 (5%)

Query: 190 LYRGIIIGVASLLAIFLTIFY-------------MVNRSSMLIPTFAMAWVVLGYISIDF 236
               + +G    LA                       R        A A   + ++ + F
Sbjct: 107 TALSLTLGDLFALAALPLFVIGFTKFAPWPGGLRTAVRHVTDSYVCAAAVFSVVWLLL-F 165

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN--RWHAKVGYITFSGIACIA 294
             L + +   +G L          +    ++   +++  +  R    V       IA   
Sbjct: 166 SPLYQELGEGAGFLGFALVYPVADIVVLCLLVPLVFMSPHSTRRAVLVAIGALIVIAGAD 225

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI------- 347
           IL  ++              +  +       + +            I    L        
Sbjct: 226 ILGALTRLTGPPFLGGVEHPVRFLGFALLGALPWLVEHRPGTDPRRITGRGLYRFAPELA 285

Query: 348 ----FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                     +      RL        L  G  ++V+L+    +  +      S+ + + 
Sbjct: 286 AIGAVFAAAVVLTVAGVRLVGVAPVLPLAAGTAVVVLLVRMVGM--LEENATLSRMVRNR 343

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
                     SGD++   D        +P  A   G     +          IH  D   
Sbjct: 344 EVHFHELARNSGDVILVLDRDGGVNYVSPGTAEAFGYRLDDVLAAPVT--ALIHPEDLGR 401

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            + + D F       +    RVRAAD  +      +  +    G+  R +    DI+ Q 
Sbjct: 402 TKAVTDLFSERGAQGVHMRLRVRAADGTWRHTESTMS-LYEQPGEPDRLLVTTRDISAQV 460

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKIND 581
              + +    F D +TG+PNR    +R + +L       +      V+ +D+D +  +ND
Sbjct: 461 ALQDEVEHLTFHDGVTGLPNRAYLEERASDVLAHRVINEEPAGEVAVIFLDLDGFTAVND 520

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L    RR+   +     LAR  G+ F +++ +     ++ D A  + + I
Sbjct: 521 SAGHVRGDHLLGQAARRLRGEVDSDATLARWGGDEFAVLVENVPRVQRVVDLAERLGRVI 580

Query: 642 -AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            + P  + +R+I +TASIG A +      S E+L+NA++AM  AK RG  HVE +     
Sbjct: 581 ASEPFPVADRDIMLTASIGVA-FAEQVTDSGELLRNADVAMTRAKERGAGHVEVYAAHMH 639

Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +    ++    L  A+   E +L Y P++ L   ++  +EAL++W       +   +F+
Sbjct: 640 DTVVSRLELQIRLREALAKDEFFLEYQPVVDLGSSQVTSVEALVRW-DRDGERVGPEDFI 698

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  +I  +   +L      +  WR   +   I + +N++ K +L     E +  ++
Sbjct: 699 GAAEESGLIVPLGERILREACEKVAVWR--LSDWDIGLSVNLSVKQVLSPRFVESVAGIL 756

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++      + L   E V++ +   +   LG LR++G+ L +DD+G   + L++L  +  
Sbjct: 757 AESGLPAEVLTLEVDEEVLLDDGGEAVQRLGELRELGVRLAIDDYGMGYASLAHLRRLSV 816

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           +  +II + +++   ++A+ I     +++L  MGCD+ Q
Sbjct: 817 DAIKIDPSFVADLGRDDTVTLLTHTIIQLGRDLGVQVVAEGIERSEQLEQLRAMGCDHGQ 876

Query: 937 DSHVASPLGFNSILKLL 953
              VA P+  + +  L+
Sbjct: 877 GFLVARPMPASGVESLV 893


>gi|196046791|ref|ZP_03114013.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|229182881|ref|ZP_04310115.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
 gi|196022326|gb|EDX61011.1| sensory box/GGDEF family protein [Bacillus cereus 03BB108]
 gi|228600595|gb|EEK58181.1| Sensory box/GGDEF [Bacillus cereus BGSC 6E1]
          Length = 689

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNNFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|229042402|ref|ZP_04190150.1| Sensory box/GGDEF [Bacillus cereus AH676]
 gi|228726949|gb|EEL78158.1| Sensory box/GGDEF [Bacillus cereus AH676]
          Length = 689

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 119/550 (21%), Positives = 252/550 (45%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIK-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R   
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQS 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           P+    +  +
Sbjct: 677 PISKYDMENM 686


>gi|256822275|ref|YP_003146238.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256795814|gb|ACV26470.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 861

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 130/564 (23%), Positives = 257/564 (45%), Gaps = 12/564 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                +  +    ++    +     +++  +   + +      A   GL    +      
Sbjct: 292 QIRRKTADLADKTDQIKQIINLVPHMIYATNANGELILANRYAADFFGLHLKELDNINIE 351

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L        D F    D  +      ++ + ++  ++ +  ++ I   P       +  
Sbjct: 352 QLRLKAPTASDLFEDE-DYLLRKDAVAVEKQLKLNDSNGKATYLTISKVPFVGRYSRLPA 410

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE K+  + I   A  D+LTG+PNR    DR+   L LS    +    ++ I
Sbjct: 411 VVTVGVDVTETKQFEQQIQHMAQHDSLTGLPNRLLLNDRINQSLALSLRHHH-NGALLFI 469

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL--- 628
           D+D +K IND LG   GD +L+ + +R+ + ++  D +ARL G+ F I L   ++     
Sbjct: 470 DLDFFKNINDSLGHMTGDKLLIEVAKRLEDNVRSGDTVARLGGDEFIIQLSELSDVEAEA 529

Query: 629 --KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  + +++     +  + + +TASIG   +     +   +++ A+ AMYHAK 
Sbjct: 530 ELDAITVAKKLIQTLTQEFQINGQSLHITASIGVLVYPRDADSHELIMQRADTAMYHAKA 589

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           +G N    F+            ++ DL  A+ N E +L+Y P I     +++ +EALI+W
Sbjct: 590 KGRNGYAVFKSDMEAVIMRRQTLESDLHRAIYNHEFFLLYQPQIDANTGKLLCVEALIRW 649

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP  G IS  EF+ IAE+   I  I  ++LE+  + I  W  +    P  + +N+++  
Sbjct: 650 NHPVEGIISPLEFIPIAEDNGTIVQIGNWVLEKACQQIKLWIKEYGYSPA-VSVNLSAIQ 708

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L   +L   + +L+ +       ++L  +E++++   +RS  LL  L+K+GI +++DDFG
Sbjct: 709 LSQGDLVSTISSLLEQEKIPAELLELEVTETLILHEEKRSIDLLKSLKKLGIRISIDDFG 768

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L++L  +P D +K + + ++          I+++II M+K +   + A+ +  + 
Sbjct: 769 TGYSSLNHLKKLPLDKLKIDRTFVSDIPGDPDSETIIKTIIKMSKELGLEVTAEGVETQE 828

Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946
            ++ L    C   Q  +   P+  
Sbjct: 829 QLEFLKGERCPQFQGYYFDRPISP 852


>gi|260549770|ref|ZP_05823987.1| signal transduction protein [Acinetobacter sp. RUH2624]
 gi|260407287|gb|EEX00763.1| signal transduction protein [Acinetobacter sp. RUH2624]
          Length = 950

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 270/577 (46%), Gaps = 13/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLCAIVLEQAAEGIFILDEKLNYIDVNPYYEKLTGFSK 433

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIR 500
             +       L  I IN +   +   DS      + G    +F  + A  +  ++ + I 
Sbjct: 434 SELLNQQ---LFNIAINQKLQQQQFHDSITQQLLKTGEYMGQFDEKFASGKSVYLWLHIN 490

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + +  ++ YIG A D+TEQK+  + +      D+LT +PNR  + ++L   L   + 
Sbjct: 491 AVKDEHNQVINYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPSY 550

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F II
Sbjct: 551 SFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAII 609

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                    I  +   + +++  P  + ++E  +TASIG A +         +  +AE A
Sbjct: 610 YEISPIHPNIEQYCQNILQALNAPFYIDQQEYFITASIGVACFPEHGRQVDHLNNHAEQA 669

Query: 681 MYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           +  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ + G E
Sbjct: 670 LSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSVKGFE 729

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       I + +N
Sbjct: 730 ALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYTDIQVSVN 788

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I ++ +    L   +   + +     S ++L  +ES ++ N +  + LL  +++  IS+ 
Sbjct: 789 IVAQQIHRGLLLNDLDEFLEQYQLDGSNLELEITESALLDNTDNVKKLLHSIKERNISIA 848

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDI 918
           LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ +
Sbjct: 849 LDDFGTGYSSLAYLTEYPIDILKIDRAFISKIGDQKQEAIVNAMIAMGKSMGLKLVAEGV 908

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             E  +  L +  CD++Q    + PL  N I++ L+ 
Sbjct: 909 ETEEQVIYLQKQQCDFLQGYFFSRPLHPNQIIQYLQS 945



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 123/433 (28%), Gaps = 79/433 (18%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSML----------IPTFAMAWVVLGYISIDFGFLSKLV 243
            I  +   + IF  + ++    +            +   A+  +    + I+   L   +
Sbjct: 54  FIWSIGFTVLIFTCLLFIPKLLTQYRDINFIKKTDLTLQAICLLSGILMGINIIVLHFSL 113

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                 +        + ++S+ II L       R+        +       +   +S + 
Sbjct: 114 PASLISVSDVHILIALFITSAHIIGLTFLTQQPRYF-------YLLFIPSTVPLLISQFT 166

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
                 +      ++    T    Y   + Y++   L+                +     
Sbjct: 167 HSQVTQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL----------FKNKQLVQVAEQ 216

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-------ERQ-------SL 409
           +      L   L   V        Q         Q +           ER        + 
Sbjct: 217 HTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNERLESHRHNLAF 276

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTI 467
           A   +G   WDWDI + ++       T       + +  +  +  L  IH NDR  F   
Sbjct: 277 AHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTSLHLKAILERIHPNDRKLFDER 331

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKS 525
           L   +  +       FR+   +  + W+    R +S        LR +G+  DI ++KK 
Sbjct: 332 LKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKTNKALRMVGMTRDIHQEKKD 391

Query: 526 LEGILCNA------------------------FQDNLTG-----IPNRQSFLDRLTTILD 556
            E +   A                        + + LTG     + N+Q F   +   L 
Sbjct: 392 QEHLRLCAIVLEQAAEGIFILDEKLNYIDVNPYYEKLTGFSKSELLNQQLFNIAINQKLQ 451

Query: 557 LSATDDNLRPTVM 569
                D++   ++
Sbjct: 452 QQQFHDSITQQLL 464


>gi|72383859|ref|YP_293213.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Ralstonia
            eutropha JMP134]
 gi|72123202|gb|AAZ65356.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Ralstonia
            eutropha JMP134]
          Length = 1109

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/440 (27%), Positives = 216/440 (49%), Gaps = 6/440 (1%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++++ E +   A  D LTG+PNR  F       L  +   +     V+ +D+D++K +ND
Sbjct: 657  RRQAEEDLRFIANHDALTGLPNRLMFKAEFEKALTRARNSEQALH-VIFVDLDEFKVVND 715

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             +G   GD VL  +  R+ E L   ++++R  G+ F ++L  + ++  +      ++ ++
Sbjct: 716  TIGHNAGDAVLREMADRLRESLPDVELISRFGGDEFIVLLDPKGDTTILGRTIARIQAAL 775

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             +   + +  I +TASIG +S+         +LK+A+LAMY AK  G N  + +      
Sbjct: 776  ELAFIVNDTPIHMTASIGISSFPEDGNDWQTLLKHADLAMYGAKQIGRNGYQFYCQRMSA 835

Query: 702  SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            S +    ++  L  A+E  E  L Y P I L       +EALI+W HP  G I  ++F+ 
Sbjct: 836  SLQRRIDMESHLRRAIEQQEFILYYQPRIVLDSGACTAVEALIRWRHPDLGLIMPADFIP 895

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             AE+  +I  I  + L    R   +W  Q   PP+ + +N++++   D  L   +   + 
Sbjct: 896  FAEQSGIIVDIGAWALREACRQNAAWVAQGL-PPVRVAVNLSARQFADKSLRLTIIDALR 954

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +     + ++L  +ES+VM + ER+   L RL++IG+ L +DDFGT  S L+YL   P D
Sbjct: 955  QARLPGNLLELELTESMVMHDAERASRWLSRLKRIGVRLAIDDFGTGYSSLAYLSRFPID 1014

Query: 880  TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            TVK + S +     +     I  ++I +   +   ++A+ +  E  ++ L   GCD +Q 
Sbjct: 1015 TVKIDRSFVRYIPESRSDTQITSAVIGLGHRLGLEVVAEGVENEAQLEFLRSEGCDEVQG 1074

Query: 938  SHVASPLGFNSILKLLKERF 957
             + + PL    I   L  R 
Sbjct: 1075 YYFSHPLPPAKITAFLASRM 1094



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 76/255 (29%), Gaps = 18/255 (7%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA--------WI 345
           A  F      P  T  +       +            ++G    VL +          W+
Sbjct: 265 AGDFAEPAVSPSATNLLYDSVTGLVTHGGAASEDGGSIRGTNSHVLSMVVVRNFGGRRWV 324

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIFSD 403
           + F           + L   ++   L+  ++L  +   +  +  + V      +  +   
Sbjct: 325 IAFSADATAISGPQRYLPALVMISGLIISVLLSWLAYALSSSRARAVAVAEQMTYNLRES 384

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
               S A   +    W  D+ +     + ++A +LG                I    R  
Sbjct: 385 QAALSEAQQIARLGDWRIDLEKSSAHFSREMARLLGWRGD--KPTPETLFEAIDAGYRIV 442

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R  + + +  R    ++E   R    +  W+ +        +  +LR  G A DI+++K
Sbjct: 443 LREKMQAALLDRL-PFEFECPYRFRGRRRGWLHLIGHAHGAQDSAVLR--GTAQDISQRK 499

Query: 524 ---KSLEGILCNAFQ 535
              ++       A  
Sbjct: 500 SAEQAQAQEHQIALH 514


>gi|87121287|ref|ZP_01077177.1| putative sensory box/GGDEF family protein [Marinomonas sp. MED121]
 gi|86163444|gb|EAQ64719.1| putative sensory box/GGDEF family protein [Marinomonas sp. MED121]
          Length = 716

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 117/502 (23%), Positives = 230/502 (45%), Gaps = 13/502 (2%)

Query: 460 DRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           D +     +     +        +E R+        W  + +      +    +      
Sbjct: 207 DLNKILEFIARVQSLSEGLTTQSWELRLSTNQG-VRWHKLEVS----YDRRQSKSYVSLL 261

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+ + ++    +      D LT +PNR      L   L  +  ++  +  V+ +D+D +K
Sbjct: 262 DVHKLREQENALFKLKNYDALTDLPNRHLLYQELDLTLQTAQ-NNLTQFGVLYLDLDGFK 320

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G  VGD+++V + +R+   L     L RL G+ F ++        ++   A  +
Sbjct: 321 VVNDSFGHRVGDELIVQVAKRLMTALPKGGRLFRLGGDEFALLQEGVTQIEELEVLAQNL 380

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +       + + E+ +TASIG A + +       +LK A++AMY AK  G N  + +  
Sbjct: 381 MQVACAAYPIADMEMLITASIGIAHYPTHAQDVDSLLKLADVAMYRAKSIGHNSYKVYDS 440

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +  +  +  + +   L  A+E  E  L Y P I L+D+  VG EALI+W HP++G IS  
Sbjct: 441 NMSQSLNAYLTLGGGLRRAIEKQEFELYYQPKINLLDQTTVGAEALIRWRHPEFGMISPD 500

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAEE  +I  +  +++    + +  WR+    P + + +N++ +  +  +L   + 
Sbjct: 501 RFIPIAEETGLILPLGEWVIRTACKQLQEWRE-LGFPDMTVSVNLSGRQFMQADLVNMVH 559

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  +P  ++L  +ES++M + +++   L   R++G+SL++DDFGT  S L+YL  
Sbjct: 560 QVLIETGINPKNLELELTESMLMADADQTIEKLHGFRELGLSLSIDDFGTGYSSLAYLKK 619

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P  T+K + S +   +      AI+++ I MA ++   +IA+ +     +  L    C 
Sbjct: 620 FPIQTLKIDRSFVRDLSSDLDDNAIVKATIVMASSLNLKVIAEGVETHTQLDVLKGYQCQ 679

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q    + P+        +  
Sbjct: 680 EVQGFFFSKPMPRQEFNLYIAR 701


>gi|187777039|ref|ZP_02993512.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC
           15579]
 gi|187773967|gb|EDU37769.1| hypothetical protein CLOSPO_00584 [Clostridium sporogenes ATCC
           15579]
          Length = 892

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 236/452 (52%), Gaps = 11/452 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   +       N R  
Sbjct: 447 ELDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTI---KNYRNKRFA 503

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   L+     + RL G+ F II+   N+ 
Sbjct: 504 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLIGPNHKIGRLGGDEF-IIVQIINSI 562

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++  PI   E ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 563 SDAEKLAGKICTTLNHPIKYKEDDLFIGASIGISVYPEDGKDTSTLMKNADAAMYAAKKN 622

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 623 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAVESLVRWK 682

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +A+ +  I  I+ ++L +       W  Q N  P+++  NI+ K +
Sbjct: 683 F-DNKIISPNQFIPLAKNIGEIANIDNWVLNKACSQCHLWERQNNN-PLYVSANISFKQM 740

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L+K GI ++LDDFGT
Sbjct: 741 KDKNFVDNVLNILKTTKLPPSYLCLEITEDEAMEDVDLSIRTLEALKKHGIKISLDDFGT 800

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 801 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVETIDQ 860

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           ++ L  + CD+IQ  +++ PL   +   K ++
Sbjct: 861 LEILQELDCDFIQGFYISEPLPIKNFESKFIR 892


>gi|83643246|ref|YP_431681.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631289|gb|ABC27256.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 721

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 122/423 (28%), Positives = 218/423 (51%), Gaps = 6/423 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR  F + L   +  +   +     VM++D+D++KKIND L  + GD ++V
Sbjct: 288 THDALTGLPNRSFFQEDLAQAILRAQRANKY-LAVMLVDLDQFKKINDTLTHSAGDQLVV 346

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +LT+R   LL+    +AR  G+ F ++L +  +  ++   A  +   +  P  L + E+ 
Sbjct: 347 ALTKRFNTLLENEISIARAGGDEFMMLLENPESVDEVIAIANRIMACMKQPFTLNDEEVF 406

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--L 711
           +T SIG A +    +++ ++++NA+ A+Y AK  G N    +           ++ D  L
Sbjct: 407 ITCSIGIAVYPEGGVSAEDLIRNADAALYRAKAAGRNGYHFYTTGMHAEALKRLELDRWL 466

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E +EL L + P + L   +  G E L++W  P+ G IS +EF+ +AEE  +IK + 
Sbjct: 467 REAIERNELSLAFQPKVNLKTRDYTGAEVLLRWYRPEQGFISPAEFIPLAEETGLIKELG 526

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           ++++ R  + +  WR    +  I + IN+++  L D EL   +  L+ +    P +++  
Sbjct: 527 MWVVRRACQQLSEWR-GTPLSHIRLAINLSAIQLEDKELVHKIDNLLREFDVPPRQLEFE 585

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E V + N E +   L  L K+G  L++DDFG   S L+YL + P   +K + S ++  
Sbjct: 586 LTEEVFIQNIESNMAHLNELIKMGFRLSIDDFGVGYSSLAYLKHFPISCIKIDRSFVSQL 645

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   I+ ++I MA N+  +++A+ +  E     L + GCD  Q    A PL  + +
Sbjct: 646 ETNADDRVIINAVIAMAHNLNLSVVAEGVETEAQAAYLQKQGCDEAQGYLFAKPLPPDQL 705

Query: 950 LKL 952
            KL
Sbjct: 706 YKL 708


>gi|163853410|ref|YP_001641453.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163665015|gb|ABY32382.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 817

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 150/755 (19%), Positives = 280/755 (37%), Gaps = 36/755 (4%)

Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276
                  W +     + F         L      I  A +   ++  +        L   
Sbjct: 55  FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
                +                 +       A +         L          + G  R
Sbjct: 115 AAGLVLATAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--------LVGGLVLIVILIGFTVIQ 388
            + +     L         M          +           L   + L+ + +    + 
Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPAAPVAGGGAVLGSTQLGLAVGLVSLAVLAAGLT 234

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L   +  +    +  R  L    + ++++        V        + G  +  + G 
Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L      D       L     +       EF VR A      + +  R + +  G 
Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-DYLGR 347

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + + + ++ +++    I   A  D LT +PNR    +RL   L+ +A +      +
Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALENAAEN-GTSVAL 405

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D++K +ND  G A GD +LV   +R+   L+  D LAR+ G+ F I+L       
Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRTLA 465

Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680
           ++A+ A  +  ++  P  +  +         + + AS+G A + S   T+  + + A+ A
Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y  K  G   V  F   +      R  ++ +L  A+   EL L Y PI+     EI   
Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRVEHELSGAIARGELALDYQPIVNGRTGEIEIF 585

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  ++F+ +AE+   I  I  ++L+       +W       P  + +
Sbjct: 586 EALIRWHHPERGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ K         G+ A++ +   SP R+ L  +ESV + +   +  +L  LR +G+ L
Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL    FD +K + S + G       + I+R+I  +  N+  T+  +
Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +  L  +GCD +Q    A P    ++ +
Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795


>gi|225862526|ref|YP_002747904.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
 gi|225786244|gb|ACO26461.1| sensory box/GGDEF family protein [Bacillus cereus 03BB102]
          Length = 689

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNNFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|124265497|ref|YP_001019501.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124258272|gb|ABM93266.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 806

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 143/578 (24%), Positives = 269/578 (46%), Gaps = 17/578 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++  F +I  +       Q +    ER    +  S + +  +            I  ++G
Sbjct: 234 LIAFFVLISDISRHRLAEQAVRESEERLGKFMQASAEGI-VFHKGGVITDANAPIGMLVG 292

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G  R  L ++  +       ++ S          YE  +     +   +   +
Sbjct: 293 YGLDELMG--RRTLDFVAPDQVSKVAAVMSS-----GQETTYESALIDKSGRRIPVEFIV 345

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           R M   +  +   + I  D+ ++  +   I   A  D LTG+PNR +F+  +  ++  +A
Sbjct: 346 RTMMRGDERLR--MTIVRDLRDRHAAQAHIHHLAHHDALTGLPNRLAFMAEIDQLMARAA 403

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ ID+D +K++ND LG   GD++L ++ +RIG +L+  D++AR  G+ F +
Sbjct: 404 ASREA-LALLFIDLDHFKRVNDSLGHLAGDELLKTVAQRIGAVLRASDVVARFGGDEFMV 462

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++        +AD A  +  +I +P++    R I+VT SIG A +    IT +E++K+A+
Sbjct: 463 LIGGGPRLEDVADVARKLLAAIEVPLDAEVGRSISVTPSIGIAMFPGDGITPAELIKHAD 522

Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK RG    + F  +  S     ++++ +L  A+E  E  L + P +R  D  +V
Sbjct: 523 TAMYRAKARGRATYQFFDPTLASNAYAALVLEGELAQALERGEFVLHFQPQVRAGDGVLV 582

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP+ G +   +F+ +AE+  ++  I  ++L   AR    W D      + +
Sbjct: 583 GAEALIRWQHPERGLLLPDQFIPLAEQQRLMLPIGTWVLHEAARAARRWHDDGL-CAVPV 641

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++      +    +   ++        ++L  +E ++M         L +L+ +GI
Sbjct: 642 AVNLSAVQFQAPDFVSTVAQALAGAGLPGRLLELELTERMLMDELPEVSGRLAQLKALGI 701

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTII 914
            L++DDFGT  S L +L  +P D +K + S +    E R  +AI R+II MA+++  T+I
Sbjct: 702 RLSVDDFGTGYSSLGHLKSLPIDKMKIDRSFVVDLPEARGSVAIARAIIQMARSLGITVI 761

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           A+ +  E     L R  CD +Q   ++  L   +    
Sbjct: 762 AEGVETEAQRAFLAREQCDELQGEAISPSLSLQAFEAW 799



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             V+  V AT    +      E+  L       ++  +D    R +      A   G   
Sbjct: 111 VCVLHDVSATRQAERVASVQAEQLRLLADSVPALIACYDAREQRCLFANRPYALTFGRDE 170

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            S+ G        I        R  LD+ +  +R  + YE ++  AD +  W+ + + P 
Sbjct: 171 QSILGLPIA--EVIGEAALRRIRPQLDTVLVEQRA-VAYERQLVRADGRTQWVEVHLLPQ 227

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530
             ++G ++ +  + +DI+  + + + + 
Sbjct: 228 LATDGRLIAFFVLISDISRHRLAEQAVR 255


>gi|87120422|ref|ZP_01076317.1| PAS:GGDEF protein [Marinomonas sp. MED121]
 gi|86164525|gb|EAQ65795.1| PAS:GGDEF protein [Marinomonas sp. MED121]
          Length = 1003

 Score =  476 bits (1225), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/596 (21%), Positives = 252/596 (42%), Gaps = 28/596 (4%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             LA     +       R +     + D +   D     V        I G     +    
Sbjct: 411  ALARDISRRKKAESELRIAATAFETQDGILITDTQHKIVRVNTAFQKITGYQEAEILDQN 470

Query: 450  RNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             + L    H  D   F+ I         G  + E   R    +    +  I  + N    
Sbjct: 471  ISLLRSGRH--DEIFFQKIFACIDD--CGYWEGEIWNRKKCGEIVPELTTISTVYNDLKI 526

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD------- 561
             + Y+ I  DI+  K++ + I   ++ D+LT +PNR+   +++  ++  +          
Sbjct: 527  PINYVYIIKDISLTKQNEQLINQLSYYDSLTCLPNRKMISEKVEQLIKQAQHQSLTVNTS 586

Query: 562  ----DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                  +R  ++ ID+D +K IND  G +VGD +L  +  R+ + ++  DI+AR  G+ F
Sbjct: 587  GHYLPLIRHALLFIDLDHFKNINDSKGYSVGDKLLQEVAHRLIDTVRSTDIVARFGGDEF 646

Query: 618  GIILISEN-------NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
             ++L   +          +    +  +  ++A    +      +++S+G      S    
Sbjct: 647  ILLLEGVDVSLDAGRALYRAKKVSCLINDALAQVFEINGEHFYISSSVGITEIDESVDEV 706

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728
             +  K+AELAMY AK  G N    +          RV ++  +  A+   E  L Y P  
Sbjct: 707  FDAFKHAELAMYEAKSSGRNRYCFYSPQMQEKILERVNLETAMRKALIKDEFLLYYQPQF 766

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                  + G+EALI+W HP  G IS  +F+ +AE+  +I  I  +++      +  WRD 
Sbjct: 767  D-DLGVLRGVEALIRWHHPDKGIISPMQFIPLAEDSKLIIPIGEWVVREACNTLARWRDD 825

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              +  + + +N++      ++  + ++ ++ +T  S   ++   +ES+++ +       +
Sbjct: 826  PLLSQVKVSVNVSVIQFAQDDFVDLVRLILVETGASAKLLQFELTESMLIDDKANILAKM 885

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMA 906
              L+ +G+ L+LDDFGT  S LSYL  +PFD +K + S +        +  +  +I  M 
Sbjct: 886  QGLKALGVLLSLDDFGTGYSSLSYLQQLPFDQLKIDQSFVRNLNGQGDQHPLALTITTMG 945

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             ++   +IA+ I  +  + +L   GC+  Q   +  P+  + + ++  ++  L++ 
Sbjct: 946  HSLGLEVIAEGIEEKESLLKLQSFGCNLFQGYFMGHPMPLSKLEEVGLQQLSLMQT 1001



 Score = 38.0 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 60/182 (32%), Gaps = 22/182 (12%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           + + +I   L+ GLV ++  I              +  + +  +R +  +    D +++ 
Sbjct: 263 IVSYLIISGLIAGLVALICHIYLIKNGLEGVVKQRTLALTNTNKRLTGLLDAIPDFLFEI 322

Query: 422 DIVRDRVTT---TPDIATILGLASGSMHGPIRNWLPYIHINDRDNF------RTILDSFV 472
           D   + +     +  ++   G         +  +L  +                  +   
Sbjct: 323 DDNEEVLQCHFPSKLLSRRFG------THIVGRYLTDVFPESVILVYQDSFKEAKTEGHS 376

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +   L  E        + HW  + +    +S+ +   ++ +A DI+ +KK+   +   
Sbjct: 377 AGKSFCLDIE-------GKEHWFELSVSYSISSDYNRPCFVALARDISRRKKAESELRIA 429

Query: 533 AF 534
           A 
Sbjct: 430 AT 431


>gi|170740237|ref|YP_001768892.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacterium sp. 4-46]
 gi|168194511|gb|ACA16458.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Methylobacterium sp. 4-46]
          Length = 1034

 Score =  476 bits (1225), Expect = e-131,   Method: Composition-based stats.
 Identities = 150/578 (25%), Positives = 264/578 (45%), Gaps = 30/578 (5%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            A     + + +       A+      +   D     +     +A +LG A  ++      
Sbjct: 466  ALLERDRSLRTQNRLFDAALGNMSHGLLMADAAGRLIVANRRLAELLGTAPETLA--PGE 523

Query: 452  WLPYIHINDRDN---FRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSN 504
             +  I           R  L      +R     E    F++   D     + I  RPM++
Sbjct: 524  SMEVIFAEIGARCSLGRRALARMRALQRDIATREGAGTFKISGQDG--RTLSITQRPMAD 581

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                    + I  D+TEQ+++ + I   A  D LT +PNR  F +RL  ++   A D   
Sbjct: 582  G-----GSVAIYEDVTEQQQAEDRIRFLAQHDPLTRLPNRVLFRERLDAMMRADAPDAT- 635

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
               ++ +D+D +K +ND LG  VGD +L ++  R+G  +    ++ARL G+ F +     
Sbjct: 636  --ALLYLDLDAFKNVNDTLGHPVGDALLAAVGARLGACVGEGGVVARLGGDEFAVACAE- 692

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                     A  +   ++ P  L  R + V AS+G A        +  +L++A++A+Y A
Sbjct: 693  -GEAAAQALATRIIAQLSAPYALAGRTVQVGASVGIAVSGPEARDADTLLRHADMALYEA 751

Query: 685  KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K RG      F  S      +R+ ++ DL  AV   +L L Y P+  L    + G EAL+
Sbjct: 752  KGRGRGLACVFEKSIAARLHERLALQSDLAEAVPGGQLVLAYQPVFDLAGGRVSGFEALV 811

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W+HP  G +S ++F+ IAE+   I+AI  F+L+R  RD  +       P I + +N++ 
Sbjct: 812  RWNHPVRGFVSPAQFIPIAEQTGQIEAIGAFVLDRACRDAAALP-----PGIRVAVNLSP 866

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              L   ++ E +   ++++  +P+R++L  +E+ +M + ER   LL R+R +G+ + LDD
Sbjct: 867  VQLRAEDIVERIATALAESGLAPARLELEITETALMEDSERMVQLLERIRALGVRIVLDD 926

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT  S LSYL   PF  +K + S +   T     +AI+ +I+ +A  +     A+ I  
Sbjct: 927  FGTGYSSLSYLRTFPFHKIKIDQSFVREMTTRANSLAIVSAIVGLADELGMATTAEGIET 986

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
               +  + ++GC   Q   +  P    S  ++L+   P
Sbjct: 987  ADHLDFVRKVGCREAQGYFLGKPKPILSAFEVLRAPLP 1024



 Score = 37.6 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 17/142 (11%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                           A+    D    WD     VT       +  L+  ++    R + 
Sbjct: 312 HELQAARDRAHRMLENAIEAMADGFVMWDRDDRFVTCNSRYRALYALSEPALRPGAR-FE 370

Query: 454 PYI--------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             I        +     +    + + V + R       R+     ++  +  R      +
Sbjct: 371 DIIRYGAERGQYPQAGSDLDAFVRNVVAWHRDDHGTLERLL-PGGRWVLITER----RTA 425

Query: 506 NGDILRYIGIANDITEQKKSLE 527
            G+    +GI  DIT  K +LE
Sbjct: 426 TGET---VGIRTDITALKAALE 444


>gi|229015865|ref|ZP_04172833.1| Sensory box/GGDEF [Bacillus cereus AH1273]
 gi|229022086|ref|ZP_04178640.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228739238|gb|EEL89680.1| Sensory box/GGDEF [Bacillus cereus AH1272]
 gi|228745427|gb|EEL95461.1| Sensory box/GGDEF [Bacillus cereus AH1273]
          Length = 689

 Score =  476 bits (1225), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/577 (21%), Positives = 247/577 (42%), Gaps = 16/577 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +      + + + A       I          +  + D +   + +       P    I 
Sbjct: 121 ICQFIICITRDITAQVKEKVEIEEKQMLFKSLLEYNNDSIVSVNSIGRITYANPATYEIF 180

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     +         +I+      F+TI    +  R  ++  + +    +    ++ +R
Sbjct: 181 GYRYEELSNQF--VFQFINKEYEQAFQTIFKGALQGRAQQIVAK-KYIHKEGYELYISVR 237

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             P+   N +I+    +  D+T Q  +       A+ D LTG+ NR S  ++L   L   
Sbjct: 238 TIPII-VNSEIVGVYIVTRDVTRQVLNEMKTEYLAYFDQLTGLMNRISCTNKLNEFLA-- 294

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              +N +  ++ ID+D++  IND  G   GD VL  +T  + ++      L R   ++F 
Sbjct: 295 ---ENKKFALVFIDLDEFHLINDTFGHKEGDQVLKKVTECLRDVKIEDMHLFREHDDQFV 351

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++ +      + + A  + K I+    L E ++ ++ASIG        +    + +  +
Sbjct: 352 MLIENIT-RECVEEVAQTILKKISGHFVLEEEDVYLSASIGIVMAPEDGMDEKILFQRVD 410

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            A+  AK +G  +   +       R  R +I+  L  A+E  E +L Y P I +   +I 
Sbjct: 411 AALEKAKEKGKGYYHFYCSGLDCEREQRFIIENQLHRAIEKDEFFLYYQPQINIETGKIA 470

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EALI+W++ + G +S ++F+ +AE    I  ++ +++ ++   I  W ++     + I
Sbjct: 471 SMEALIRWENKELGLVSPNQFIPLAERTGFIIKLDEWVVHQVCEQIREWLNKGYEV-VPI 529

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+++      L E +   ++K    P  + +  +E  ++ + + S+ +L +L++  +
Sbjct: 530 AVNISARHFRSITLIEMITRALNKYNVPPHLLVIEVTEGALI-HKDVSKRVLLQLKEQNL 588

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
            + LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II +A  +   +I
Sbjct: 589 KIHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIYIDERDTNITAAIIHLAHTLGLNVI 648

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A+ +     I+ L       +Q      PL    +  
Sbjct: 649 AEGVEKAEQIQFLKEKNVKIVQGYFYNRPLSIYDVEN 685


>gi|119469199|ref|ZP_01612183.1| hypothetical protein ATW7_18925 [Alteromonadales bacterium TW-7]
 gi|119447451|gb|EAW28719.1| hypothetical protein ATW7_18925 [Alteromonadales bacterium TW-7]
          Length = 1003

 Score =  476 bits (1225), Expect = e-131,   Method: Composition-based stats.
 Identities = 146/562 (25%), Positives = 244/562 (43%), Gaps = 16/562 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIH-IN 459
                 SL    S + +   D         P        +   + G     L    H   
Sbjct: 445 DSLHLASLVYGNSSESMAITDANGIIFDVNPAFCETTQYSKDEVIGHSTRILSSGEHSKE 504

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             +     +++      GR Q E   R  +       + I  + + N    R I I  D+
Sbjct: 505 FYEKIWASINA-----TGRWQGEIINRKKNGVLFTEWLNIDTVYDENNKPARRIAIFTDL 559

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+ ++ + I   A  D+LT +PNR     RL      +   +N    VM++DID +K I
Sbjct: 560 TEKIQANKTIWRQAHFDHLTDLPNRLELKKRLNKQFSNA---NNESFVVMLLDIDHFKDI 616

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD++L  +++RI    K  + +AR+ G+ F I+     ++  I   A  + +
Sbjct: 617 NDTLGHHYGDNLLKVVSQRIVNSAKNAEFVARIGGDEFVIVFNHIKSTRHINQIASNILQ 676

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S++  +++   E+ ++AS+G A        + ++LK A+ AMY AK+ G N  E F    
Sbjct: 677 SLSSALHVENEEVFISASMGIACAPEDGENTEQLLKAADQAMYKAKNNGRNGFEFFSRDM 736

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               +    + +DL  A+E  +  L Y PI+ L D  I   E LI+W HP+ G IS   F
Sbjct: 737 REQAQARMVLLKDLRCAIEYHQFELFYQPIVSLNDLHIHKAEGLIRWQHPQKGLISPIAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQA 816
           + +AEE   I AI  F+  +    +   +         I +N++   L       +   A
Sbjct: 797 IPLAEETRQINAIGQFVFSQAIETLTDIKKLT-DDDFQISVNVSPIQLSTANSGIDDWYA 855

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++     SPS I    +E +++   E ++  L  + K G+ L LDDFGT  S L+YL  +
Sbjct: 856 MLDAAKISPSSIVAEITEGLMVNPEELTQKRLKHIVKSGMQLALDDFGTGYSSLAYLQEM 915

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +   +          ++  +II MA  +   +IA+ I   +  + LT  GCDY
Sbjct: 916 DTDYLKIDKRFVDNIKADSQELSLCEAIIVMAHQLGLKVIAEGIETPLQYQLLTEAGCDY 975

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q    + PL  +  + L+ E+
Sbjct: 976 GQGYLFSKPLNKSDFMDLIAEK 997


>gi|229120144|ref|ZP_04249395.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
 gi|228663185|gb|EEL18774.1| Sensory box/GGDEF [Bacillus cereus 95/8201]
          Length = 689

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 248/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P D +K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDILKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|290960135|ref|YP_003491317.1| diguanylate cyclase [Streptomyces scabiei 87.22]
 gi|260649661|emb|CBG72776.1| putative diguanylate cyclase [Streptomyces scabiei 87.22]
          Length = 633

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/588 (22%), Positives = 263/588 (44%), Gaps = 49/588 (8%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A   +   +   D     VT    + T+LG  +  + G +   L  +  +          
Sbjct: 43  AFSVAPLAMAVVDRDGLVVTANGAMGTLLGTGTEPLTGRVAADLVDLASD--TRTWHAYR 100

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  R+ RL+   R++  D  + W+ + + P+          +    DI+  ++    +
Sbjct: 101 EVLRGRQARLRCTRRLKQQDGGWLWVQVSVAPLPEEE---RAVLLSVTDISAHRQLQARL 157

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATD--DNLRPTVMVIDIDKYKKINDVLGIAV 587
                 D +T +PNR  F ++L+  L+    D     R  ++ +D+D +K +ND LG  V
Sbjct: 158 RHLQMHDPVTRLPNRTLFFEQLSAALEREGYDEVGTGRIGLVYLDLDGFKAVNDTLGHRV 217

Query: 588 GDDVLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAI 635
           GD +L ++  R+        +            +ARL G+ F +++     + ++AD A 
Sbjct: 218 GDRLLAAVAERLTRCADEAALLRKPGTPAGAPLVARLGGDEFALLVEDSTGTEQLADLAD 277

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           ++ K++  P +L  + ++V+ASIG     S+  T++ +++ A+  +Y AK  G      F
Sbjct: 278 SVLKALQAPFDLAGQRLSVSASIGVVERQSTSTTTTGLMQAADTTLYWAKADGKARWTLF 337

Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        +   L  AV   E  L Y P++ + + E+ G+EAL++W HP++G ++
Sbjct: 338 DPERNAHRMTRQALSSTLRAAVGRGEFVLEYQPLVGMAEGEVRGVEALVRWHHPQFGLLT 397

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCE 812
            + F+ +AEE   I  +  ++L    R    W+ D  +  PIF+ +N+A + + D++L  
Sbjct: 398 PNRFISLAEEDGSIVQLGRWILATACRQARRWQTDHPDRAPIFVSVNVAVRQVWDSDLVA 457

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++++T  +P  ++L  +ES +MG+  R    L  L  +G+ + +DDFGT  S L+Y
Sbjct: 458 DVAEILAETGLAPHLLQLELTESALMGSAGRPLQALRALSDMGVRIAIDDFGTGYSNLAY 517

Query: 873 LGYIPFDTVKFNGSLMTG---------------------------STEKRIAILRSIIPM 905
           L  +P   +K +G+ + G                            +     I+ +++ +
Sbjct: 518 LSRLPVSVLKLDGAFVRGFQYEGGEEGAGPGAAGPEADDVEDSGQPSPADEIIVEALVQL 577

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A  +  ++ A+ +  +     L R+GCD  Q    +  +    I +LL
Sbjct: 578 AHRLGLSVTAEGVETDAQASRLRRLGCDTGQGWLYSRAVSPERIAELL 625


>gi|146308662|ref|YP_001189127.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576863|gb|ABP86395.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 715

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 134/634 (21%), Positives = 259/634 (40%), Gaps = 19/634 (2%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +   M+G  R  L      +IF+  I        R  +      ++      V+      
Sbjct: 76  VARLMRGNPRTRLTP----IIFVSAIAQTQDAVLRGYSTGAVDFVLKPFDPSVLRHKIHS 131

Query: 387 IQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           +          Q +    +R        +  + + +             P +A +L    
Sbjct: 132 LLEHERNRSELQQLTQQLDRARAFNASVLANAAEGIMVVGEDGRIQFANPAMAQMLEGEV 191

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           G + G         +      ++                +E  +R        + +   P
Sbjct: 192 GDLEG-AELMSFLKNPAVEGGWQESEFFRHFKREATYRVHEAMLRTLSGGCLPVALSCSP 250

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +          + IA D++  +     +   A  D+LTG+ NR+ F   L + L      
Sbjct: 251 LPRMQ---QAMVVIALDMSVVRNLHAQLESQAVTDSLTGLLNRRGFHLALESALARIERS 307

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              R  V+ +D+D +K+IND LG  VGD +L  +  ++   L+  D LAR+ G+ F  +L
Sbjct: 308 GQ-RIAVLYLDLDGFKRINDSLGHDVGDQLLRRVGEQLKACLRPYDSLARIGGDEFTALL 366

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +  +    A  A  + + +++   L   +  + AS+G A +     +   +L++A++AM
Sbjct: 367 DNLGHPEDAAKVAEKLIELVSVRHTLDGVDFALGASVGIACFPECGQSVEGLLRSADMAM 426

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G      F          R+M++E L  A+EN +  LVY P   L    + G E
Sbjct: 427 YEAKRAGRQQYRFFSPEMNGRARSRLMLEESLRHAIENDDFVLVYQPQFHLNSGRLRGFE 486

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W H   G ++ + F+ + EE  +I  +  ++    AR +   R Q     + + IN
Sbjct: 487 ALLRWQHRVAGIVAPNVFIPLLEETRLINRLGEWIFREGARQLAGLRSQFGEE-LILSIN 545

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++       +L   +Q ++       S++++  +ES +M + E ++  L  LR++G+ + 
Sbjct: 546 VSPVQFGMPQLVADLQRVLDVHGLKASQLEVEVTESALMQDLELTQAQLRHLRELGVKIA 605

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL +   DT+K +   +     + +  A++ +II +  ++   +IA+ 
Sbjct: 606 IDDFGTGYSSLAYLRHFELDTLKIDRLFIANMLDSPRDAAVVSTIIDLGHHLGLEVIAEG 665

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  +     L    C  +Q   VA  L   + L+
Sbjct: 666 VETQAQRDWLVEHRCSIMQGFLVAPGLSAEAALQ 699


>gi|304395432|ref|ZP_07377315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304356726|gb|EFM21090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 867

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/563 (23%), Positives = 261/563 (46%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q + +   R       + D +W+ D     +  +    T+ G       G   + L   
Sbjct: 309 QQELANSEARFRDLAEAASDWIWETDAEGRLIYLSARFHTVTGHDITHWLGRHIDHL-LT 367

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +       +       ++  L+ +F             +  + + +    I  + G  
Sbjct: 368 HPS-HSLVAWLRRQEEDGQQMPLRCQFMSAH--GNRRIGQLVAKTIWHDAKRI-GFRGTV 423

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT+  ++   I   +  D LTG+ NR   L+ LT  L L+ TD +   T++ +D+D++
Sbjct: 424 SDITQGMEAEARIQFLSRHDVLTGLSNRMQLLEFLT--LHLAITDGSAPLTLVTLDLDQF 481

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + IN+  G A GD+VL  + +R+   +   +++ARLSG+ F ++L  E N  ++A     
Sbjct: 482 RPINETWGHAAGDEVLSQIAQRLKRCIGPQELVARLSGDEFVLVLR-EANRERVAQRCAQ 540

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  PI+  +    +T S+G A           +L+ A++A+  A+  G N    + 
Sbjct: 541 LVHEVQQPISTGQHVHYLTISMGIACAPQDASHPEALLEMADIALNEARDAGRNQWVWYA 600

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 R D+  +   +  A++N+E  L Y P  +L+  ++ G EALI+W       I+ 
Sbjct: 601 NEMTSQREDKREMARRIEKALKNNEFRLHYQPRYQLLTGQLAGAEALIRWQIAPDQWITP 660

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AEE  +I  I+ ++L R   D + W  +      ++ +NI+  +   ++L + +
Sbjct: 661 DHFIPLAEESGLIATISDWVLMRACEDALGWGGER-----YVSVNISPMEFRTSDLVQRV 715

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + K+    +R++L  +E+V   +P+ +  ++  LR +G+ LT+DDFGT  + L YL 
Sbjct: 716 ANALEKSGLPATRLELEITENVTFEHPQHALEIMQGLRSLGVRLTVDDFGTGYAALGYLK 775

Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PF+ +K + S M     +++  +++  II +A+    TI A+ I  E  + +L ++ C
Sbjct: 776 TFPFNGLKIDRSWMKDFPESQQAQSVVAGIIALARAFALTITAEGIETEAQLNQLKQLSC 835

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           +  Q   +  P+   +   LL+ 
Sbjct: 836 EEGQGYFLGRPMPLAAFRTLLER 858


>gi|220928078|ref|YP_002504987.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulolyticum
           H10]
 gi|219998406|gb|ACL75007.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulolyticum
           H10]
          Length = 856

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 220/434 (50%), Gaps = 8/434 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S E     A  D LTG+PNR+S L+  +  L     +   +  ++ ID+D +K IND +
Sbjct: 425 QSEEKYNFMALHDVLTGLPNRRSLLEDSSRFL---GINTGKKTVLLFIDMDNFKYINDTM 481

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+++    +R+   LK    L RL G+ F +++ +  N  +  DF   + +S   
Sbjct: 482 GHEFGDELINKAGQRLKTALKDLGTLYRLGGDEFILLIYNIENQFEAEDFMSQVLQSFKD 541

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +    + +T SIG A +        +++K A++AMY AK +G N    +     ++ 
Sbjct: 542 EFEIGNSVLHITFSIGAALYPDHGNNIEDLIKCADIAMYKAKEQGKNRYVLYDRDMDKAF 601

Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ I++ L  A++N+E  + Y P   L  ++I GLEAL++W   + GN+S  +F+ +A
Sbjct: 602 SERMTIEKLLHTAMDNNEFEVYYQPQFDLQSQKITGLEALLRWKSSELGNVSPIKFIKVA 661

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  ++L +    +    ++     + + +NI++  +L +     +  +I+  
Sbjct: 662 EDTHLIIPLGEWVLNQACAFVKELHEKGLQ-GLTVSVNISTIQILQSGFTRKIIDIINSH 720

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  ++L  +E++++ +       L +L+K+GI + LDDFG   S L+YL  +P  T+
Sbjct: 721 KLNPECLELEITETILIESFTTVFRKLNKLKKMGIRIALDDFGKGYSSLNYLKQLPISTL 780

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      E+   I R II + K++  TIIA+ +     ++ L +  CD IQ   
Sbjct: 781 KIDKSFIDSVSIDEEGRTITRHIITLGKSLGMTIIAEGVEFNEQLEYLKKYHCDRIQGYL 840

Query: 940 VASPLGFNSILKLL 953
            + PL    + KLL
Sbjct: 841 FSKPLPGEDVKKLL 854


>gi|330807167|ref|YP_004351629.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375275|gb|AEA66625.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 897

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 146/566 (25%), Positives = 268/566 (47%), Gaps = 13/566 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S +     +         P    I    +  +HG   + LP +
Sbjct: 336 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYTTEEVHGQRLSELPAL 395

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +         S +       Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 396 --ENLSELLFDAPSALAQSN-SWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDSPISLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L     LAR + N F ++L  + +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLL-DDTSLEAGQQIASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           +++NA LA++ AK  G + V+ F 
Sbjct: 569 LLMTLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L    ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D +L   +
Sbjct: 689 DQFISVAEETGLIIPIGKWIARQACRMSKQLTAAGLG-NLQVAINLSPKQFSDPDLVASI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++ +       ++L  +E +++   E + L L +L+++G++L +DDFGT  S LSYL 
Sbjct: 748 ASILKEEQLPARLLELELTEGLLLEATEDTHLQLDQLKRLGLTLAMDDFGTGYSSLSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      +  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAQQLAFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFP 958
           D  Q      P+    +++ LK R+P
Sbjct: 868 DVGQGYLFDRPIPGAELIEKLK-RYP 892


>gi|308185836|ref|YP_003929967.1| hypothetical protein Pvag_0305 [Pantoea vagans C9-1]
 gi|308056346|gb|ADO08518.1| Uncharacterized protein y4lL [Pantoea vagans C9-1]
          Length = 867

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/563 (23%), Positives = 262/563 (46%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q + +   R       + D +W+ D     +  +    T+ G       G   + L   
Sbjct: 309 QQELANSEARFRDLAEAASDWIWETDEEGRLIYLSARFHTLTGHDITHWLGRHIDHL-LT 367

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +       +L      ++  L+ +F   +A        +  + + +    I  + G  
Sbjct: 368 HPS-HSLVAWLLRQEAEEQQMPLRCQF--MSAQGHRRIGQLVAKTIWHDARRI-GFRGTV 423

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT+  ++   I   +  D LTG+ NR   L+ LT  L L+  D     T++ +D+D++
Sbjct: 424 SDITQGMEAEARIQFLSRHDVLTGLSNRVQLLEFLT--LHLALPDGAAPLTLITLDLDQF 481

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + IN+  G A GD+VL  + +R+   +   +++ARLSG+ F ++L  E N  +I      
Sbjct: 482 RPINETWGHAAGDEVLSQIAQRLKHCIGSQELVARLSGDEFVLVLR-ETNRERIDQRCAQ 540

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  P++  +    +T S+G A           +L+ A++A+  A+  G N    + 
Sbjct: 541 LVHEVQQPVSTGQHVHYLTISMGIACAPQDASHPEALLQMADIALNEARDAGRNQWVWYA 600

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 R D+  +   +  A+ N+E  L Y P  +L+  ++ G EALI+W       I+ 
Sbjct: 601 NEMASQREDKREMARRIEKALTNNEFRLHYQPRYQLLTGQLAGAEALIRWQIAPDQWITP 660

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AEE  +I  I+ ++L R  +D + W         ++ +NI+  +   ++L + +
Sbjct: 661 DHFIPLAEESGLIATISDWVLMRACQDALGW-----GGDRYVSVNISPMEFRTSDLVQRV 715

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +++K+    +R++L  +E+V   +P+ +  ++  LR +G+ LT+DDFGT  + L YL 
Sbjct: 716 ADVLAKSGLPATRLELEITENVTFEHPQHALEVMQGLRSLGVRLTVDDFGTGYAALGYLK 775

Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PF+ +K + S M     +++  +++  II +A+    TI A+ I  E  + +L ++ C
Sbjct: 776 TFPFNGLKIDRSWMKDFPESQQAQSVVAGIIALARAFALTITAEGIETEAQLNQLKQLSC 835

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           +  Q   +  P+   +   LL+ 
Sbjct: 836 EEGQGYFLGRPMPLAAFSTLLER 858


>gi|30260706|ref|NP_843083.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47525821|ref|YP_017170.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183543|ref|YP_026795.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|49481708|ref|YP_034808.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165871757|ref|ZP_02216401.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167635704|ref|ZP_02394015.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|167640674|ref|ZP_02398935.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|170688498|ref|ZP_02879705.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|170708228|ref|ZP_02898674.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|177653812|ref|ZP_02935913.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190568205|ref|ZP_03021114.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034672|ref|ZP_03102080.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218901688|ref|YP_002449522.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|227816580|ref|YP_002816589.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|228913233|ref|ZP_04076871.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228925736|ref|ZP_04088821.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228931975|ref|ZP_04094868.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|229600617|ref|YP_002865151.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|254684374|ref|ZP_05148234.1| sensory box/GGDEF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722175|ref|ZP_05183964.1| sensory box/GGDEF family protein [Bacillus anthracis str. A1055]
 gi|254738838|ref|ZP_05196541.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743777|ref|ZP_05201461.1| sensory box/GGDEF family protein [Bacillus anthracis str. Kruger B]
 gi|254755062|ref|ZP_05207096.1| sensory box/GGDEF family protein [Bacillus anthracis str. Vollum]
 gi|254762204|ref|ZP_05214048.1| sensory box/GGDEF family protein [Bacillus anthracis str. Australia
           94]
 gi|301052198|ref|YP_003790409.1| sensory box/GGDEF family protein [Bacillus anthracis CI]
 gi|30254074|gb|AAP24569.1| sensory box/GGDEF family protein [Bacillus anthracis str. Ames]
 gi|47500969|gb|AAT29645.1| sensory box/GGDEF family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177470|gb|AAT52846.1| sensory box/GGDEF family protein [Bacillus anthracis str. Sterne]
 gi|49333264|gb|AAT63910.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164712482|gb|EDR18015.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0488]
 gi|167511389|gb|EDR86774.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0193]
 gi|167528963|gb|EDR91719.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0442]
 gi|170126884|gb|EDS95765.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0389]
 gi|170667523|gb|EDT18279.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0465]
 gi|172081204|gb|EDT66280.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0174]
 gi|190560697|gb|EDV14673.1| sensory box/GGDEF family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992715|gb|EDX56675.1| sensory box/GGDEF family protein [Bacillus cereus W]
 gi|218535823|gb|ACK88221.1| sensory box/GGDEF family protein [Bacillus cereus AH820]
 gi|227006009|gb|ACP15752.1| sensory box/GGDEF family protein [Bacillus anthracis str. CDC 684]
 gi|228827693|gb|EEM73434.1| Sensory box/GGDEF [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228833929|gb|EEM79481.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228846416|gb|EEM91430.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229265025|gb|ACQ46662.1| sensory box/GGDEF family protein [Bacillus anthracis str. A0248]
 gi|300374367|gb|ADK03271.1| sensory box/GGDEF family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 689

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|269963795|ref|ZP_06178112.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831475|gb|EEZ85617.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 775

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 215/444 (48%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           ++I  +K S   +   A  D+LTG+PNR    +RL   L  +    +    VM ID+D +
Sbjct: 332 SEIERRKSSEMELAYQAKHDSLTGLPNRVYGSERLDLELSRAERMGS-NVLVMFIDLDHF 390

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND +G  VGD+VL     R+   ++  D+LAR+ G+ F +++    ++     FA  
Sbjct: 391 KQINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFATT 450

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P      E  ++AS+G + +      + ++L  A++AMY  K  G +    + 
Sbjct: 451 VLSVFNEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRDAFCFYD 510

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +     + ++  L  A+ +  L L Y PII L    IVG EAL++W+  K+G ++ 
Sbjct: 511 HNMNQDLQRFLDLESRLRHAIAHDLLELYYQPIIDLNSGTIVGAEALMRWNDEKFGFVNP 570

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813
            EF+ IAE+  +I  +  F + +       W+  A   P+F+ +N +S      ++L E 
Sbjct: 571 EEFISIAEKNGLIHQLGDFAIRQACHQAAQWQTVA---PLFVSVNFSSVQFRYCDQLLEQ 627

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + ++        +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL
Sbjct: 628 IKQHLEESGLPAEMFDVEVTESLLFNHSNELMGMLDSLRALGAKLTIDDFGTGYSALSYL 687

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +      E    ++  II MAK +   I+A+ I  +  +  L  + 
Sbjct: 688 QKFPFDRLKIDRSFLQNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKNLN 747

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C++ Q  H + PL       LL +
Sbjct: 748 CEFGQGFHYSRPLPAKDFEALLAK 771


>gi|229089610|ref|ZP_04220873.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
 gi|228693728|gb|EEL47428.1| Sensory box/GGDEF [Bacillus cereus Rock3-42]
          Length = 689

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 247/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDAIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   A +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQMPGIHLFREHDDQFVMLIENIT-KERVELVAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IKEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSH 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|326795742|ref|YP_004313562.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546506|gb|ADZ91726.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 674

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 236/485 (48%), Gaps = 11/485 (2%)

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           +GR+  + R        HW  I     S  +     +     D  + + +   +      
Sbjct: 185 KGRISTDVRFLTKTG-IHWCHIEGYKESAGD----SFYLQVTDKQDIRLAEAELYRLKNY 239

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT +PNR+S   +L + +   A  D     ++ ID+D +K +ND  G  VGD++L  +
Sbjct: 240 DSLTRLPNRESLYLKLDSQIAKVAQKDQ-SFGLLFIDLDGFKTVNDSFGHQVGDELLCGV 298

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            RRI  +L     L RL G+ F I++    N   + + A  +    A P  + + E+ VT
Sbjct: 299 ARRIQGVLPRNTQLFRLGGDEFAILVEDILNDSNLIEVAQDVVSVSAQPYPVEDLEMLVT 358

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCL 713
           AS+G + +     +  ++LK +  AM  +K  G N+   +     +  R  +     L  
Sbjct: 359 ASVGISKYPDHGKSIDDLLKTSASAMCRSKALGYNNFCLYDNGMKQDYRAQLTLGGALRK 418

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E  +  L Y P IRL DE  VG EALI+W HP+ G I   +F+ IAEE  +I  +  +
Sbjct: 419 AIEEEQFELYYQPKIRLSDELTVGAEALIRWIHPEHGMIPPDKFIPIAEETGLILPLGEW 478

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++R    +  WR+    PPI + +N++ +  + ++L E ++A +++T   P  ++L  +
Sbjct: 479 VIKRACHQLKEWREA-GHPPISLSVNLSGRQFMQSDLVEMVRATLAETGVDPKYLELELT 537

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
           ES++M + +++   L   RK+G++L++DDFGT  S L+YL   P  T+K + S ++    
Sbjct: 538 ESMLMADAQQTIEKLHGFRKLGLTLSIDDFGTGYSSLAYLKKFPIQTLKIDRSFVSDLGI 597

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                AI+++ I MA ++   +IA+ +     I  L    C+ +Q    A P+       
Sbjct: 598 DADDDAIVKATIAMANSLNLKVIAEGVESRSQIDVLNDYQCEEVQGYLFAKPMNNIDFSS 657

Query: 952 LLKER 956
            L  +
Sbjct: 658 YLSAQ 662


>gi|254409891|ref|ZP_05023671.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196182927|gb|EDX77911.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 570

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 228/438 (52%), Gaps = 8/438 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E +++ + +    + D+LT +PN+ S  ++   I    +T      T+M + +D++ +I
Sbjct: 127 SELEQAKDQLDYLMYHDSLTNLPNQLSLREQFKQI---KSTHSQQLMTIMCVGLDRFNQI 183

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG +VGD +L ++ +R+   +   D +ARL   +F IIL +  +       A  + +
Sbjct: 184 NDDLGHSVGDRLLQAVAQRLVNGVTSEDYVARLGSGQFAIILPTTPHKKDAVFVAQTLLE 243

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
             +    + ++EI VTASIG A +        ++L  A  AM+ AK +GGN  + + +  
Sbjct: 244 QFSQTFAIDDQEIFVTASIGMALYPRDGRDIEQLLNQANKAMFQAKQQGGNCHQFYSIAL 303

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S   SDRV +K  L  A+E  EL + Y P + L   +I+G EAL++W+HP+ G +S  +F
Sbjct: 304 SKGTSDRVALKTSLRYALERDELQVYYQPQLNLETGKIIGAEALLRWEHPERGLVSPIKF 363

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  ++L+   +    W+     P + I +N++ +     +L   +  +
Sbjct: 364 IPLAEETGLILPIGEWVLKTACQQTRHWQKM-GYPHLKIAVNLSGRQFQQLDLRHRLVKI 422

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++T   P  ++L  +ES+++ N + +   L  L+ +G+ + +DDFGT  S LSYL   P
Sbjct: 423 FTETGLRPEYLELELTESMLVENTDVAIRRLQALKALGVEIAIDDFGTGYSSLSYLQQFP 482

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FDT+K +   +        + AI ++II MA  ++  ++A+ +  + ++  + +  C  +
Sbjct: 483 FDTLKIDRCFIRNIQDNPSQAAITQAIIEMANTLDLKLVAEGVETDAELSFVVQHHCHKM 542

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    + PL       LL
Sbjct: 543 QGYLFSKPLPAKEFESLL 560


>gi|149909836|ref|ZP_01898487.1| hypothetical protein PE36_08836 [Moritella sp. PE36]
 gi|149807168|gb|EDM67124.1| hypothetical protein PE36_08836 [Moritella sp. PE36]
          Length = 878

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 143/602 (23%), Positives = 269/602 (44%), Gaps = 20/602 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG----ERQSLAVLGSGDIVWD 420
            +I   +   + L V+L+  T+ + + A     +   S      E  +L      + V+ 
Sbjct: 274 TLIVTGIGLIISLFVLLLRHTLYRRIRAEELAREKTRSLELVQNEYHNL-FEKVVEGVYS 332

Query: 421 WDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             +    +   P +A   G      M   + +    +H     +++  L + +  ++   
Sbjct: 333 ATLEGQFLKVNPALARAFGYEEPRQMQQAVEHIGRQLHRE-HQSYQVFLQTLLE-KKEVF 390

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            YE+          W+       +  +G ++ Y G  + ITE+K + + +   A  D LT
Sbjct: 391 NYEWEGEDRHGNTIWLSENAYLNTADDGCVV-YQGTLDVITERKFNEQQLNYQANHDALT 449

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR +  + L   L      +     V+ ID+D +KKIND  G  VGD  L     R+
Sbjct: 450 GLLNRTACQNFLEEYL-----QNKQWGVVLFIDLDGFKKINDTYGHGVGDLFLQKTADRL 504

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI--TVTAS 657
            ++L+  D +AR+ G+ F I    E +   I   A  +++ +  P+ L    I   VTAS
Sbjct: 505 KQMLRKRDRIARIGGDEFVIYFEGEMSQHTIKQLAERLQREVTRPVLLDGSSIALHVTAS 564

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAV 715
           IGF         + ++L++A+LAMY  K  G  + + F ++     +   + D  L  A+
Sbjct: 565 IGFTFLGPHYQHARDILRDADLAMYEVKKNGKANYQVFSLALHEQVQRQTEFDDLLHSAL 624

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +N E  L + P++ L D    G E L++W +PK G IS   F+ +AE+  +I+ + L+++
Sbjct: 625 DNDEFSLCFQPVVCLKDARTRGFEVLLRWYNPKLGQISPDRFIPLAEKSLLIQPLGLWVI 684

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
            +                +++ IN++ + L D++L + +  L+++   +P  I+   +ES
Sbjct: 685 TQALAGFRRLSLLQPDAGLYLNINLSPRQLQDDQLVQALPRLLTEAKIAPESIRFELTES 744

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            +  N +     L  LR +G  + +DDFGT  S L  L   P D +K + S + G  +  
Sbjct: 745 ALDMNEQVVTERLSALRTMGFKIYIDDFGTGYSSLKRLVQFPIDGIKIDRSFVDGLEQDS 804

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  ++  I+ MA+ +   +IA+ +  E+    L   GC + Q    + PL    + + L
Sbjct: 805 SKQVMVEVIVTMARLLNLQVIAEGVETEVQRTLLLEGGCRFAQGYLFSRPLPEVELSRQL 864

Query: 954 KE 955
           + 
Sbjct: 865 EN 866


>gi|170740090|ref|YP_001768745.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168194364|gb|ACA16311.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 569

 Score =  475 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 115/496 (23%), Positives = 228/496 (45%), Gaps = 22/496 (4%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                          L    R R        + + +  +          +    DI+ ++
Sbjct: 91  ILRAARRLREEGAVSLDLCHRDRT-------VQVSLSRVPG-----TGMVATLEDISARR 138

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +       A  D LT +PNR    +RL   LD  A        ++++D+D++K +ND L
Sbjct: 139 AAEASAAETARLDPLTRLPNRLLLRERLGAALDRLARRGEG-CALLLVDLDRFKPVNDTL 197

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +  R+   ++  D +AR+ G+ F ++  +  ++      A  +   I  
Sbjct: 198 GHPVGDALLEKVADRLRATVRAEDTVARIGGDEFVVLQSAVRDAADTTALAQRLVDLIGR 257

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +    +++ AS+G A           +LK+A+LA+Y AK  G      F  +     
Sbjct: 258 AYMIEGHLVSIGASLGIALAPQDGTDPDRLLKSADLALYRAKRDGRATFRFFEPTMDAQM 317

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    ++ D+  A+   E  + Y P + L++E + G EAL++W HP  G +S +EF+ +A
Sbjct: 318 QARRQLELDMRQALARREFEIHYQPQLNLLEERLTGCEALLRWRHPVRGMVSPAEFIPLA 377

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE+ +I  I  +++ +   D + W       PI + +N++      + L + + + ++++
Sbjct: 378 EEIGLIVPIGDWVIRQACHDAVRWPR-----PITVAVNVSPAQFKGDRLVDTVVSALARS 432

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R+++  +E +++ +  ++   L RLR +G+ +++DDFGT  S LSYL   PFD +
Sbjct: 433 GLPAPRLEIEITEGLLLQDDAQTLRTLHRLRDLGVRVSMDDFGTGYSSLSYLRAFPFDKI 492

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +          AI+R+I  + +++  T +A+ +     ++ +   GC  +Q   
Sbjct: 493 KIDRSFVRDMAQKPDGDAIIRAIAGLGRSLGMTTVAEGVETPEQMRRIRAEGCTDVQGYL 552

Query: 940 VASPLGFNSILKLLKE 955
           V+ P+  + +L LL  
Sbjct: 553 VSRPIPADDLLALLAR 568


>gi|296135704|ref|YP_003642946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thiomonas intermedia K12]
 gi|295795826|gb|ADG30616.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thiomonas intermedia K12]
          Length = 1082

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/559 (22%), Positives = 264/559 (47%), Gaps = 20/559 (3%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIAT-----ILGLASGSMHGPIRNWLPYIHINDRDNF 464
             +    D+V+  D                    +G++   +       +  +H  D    
Sbjct: 524  VLDNMRDVVYACDENGLLSYVNAAAIRAGLPTKMGVSLRELE-----LVTPVHTTDHKPV 578

Query: 465  ---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +  L+S +       +  F + + + Q+    I  R + +S G  L    +A+D+TE
Sbjct: 579  PLEQLPLESALRGEPKEAEN-FLIESLEGQWRHYEITARRLLDSTGTPLGAAAVAHDVTE 637

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMVIDIDKYKKIN 580
             +     +      D LT +PN+   ++ L   L   ++ D++ +  V ++DID++++IN
Sbjct: 638  IRAVDRRLKWLIDHDELTELPNQTLVIESLERWLEAETSRDESRQLAVYLLDIDRFRQIN 697

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D  G A+GDD+L+    R+   L   D LAR  GN F ++     +   + D A  +  S
Sbjct: 698  DSFGHALGDDLLIETAARLKVALAPDDFLARWGGNAFAVLHPCTADQQALLDHAEQLLNS 757

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVS 698
            +  P  L  + I +TAS+G A       +++++   A++AMY  K    G   + +  +S
Sbjct: 758  LTEPFVLDGQTIFITASLGIARAPRDGRSATQLFSRADVAMYRCKANTPGRALLYTVDMS 817

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                + + ++ DL  A+   + +++Y P + L   +++G EAL++W HP+ G +S + F+
Sbjct: 818  QRGRELIEMETDLRHALAMEQFFVLYQPKVCLQTRQVIGAEALLRWQHPQHGLVSPATFI 877

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             + EE  +I  +  ++L  + + +  W +Q    P+ I +N + + L  + +   + + +
Sbjct: 878  PLLEETGLIVPVGQWVLNAVCKQLQEW-EQQGKTPLPIAVNCSMRQLQGDLILRQVSSAL 936

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
              +  +P  ++L  +ES+++ +PE    L+ +LR++G++ ++DDFGT  S L+ L  +P 
Sbjct: 937  EHSGIAPGLLELEITESMMLRDPEHVSGLIVQLRELGVNTSIDDFGTGYSSLASLKRLPV 996

Query: 879  DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             T+K + + +          AI R++I MAK +   +IA+ +  +     L ++GC+  Q
Sbjct: 997  TTIKLDRAFVKDLPNDADDAAITRAVISMAKALHLIVIAEGVETQEQADFLQQLGCEAYQ 1056

Query: 937  DSHVASPLGFNSILKLLKE 955
                +  +      + L +
Sbjct: 1057 GWLFSQAVAPKRFAQYLAD 1075



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 1/183 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            + +   +    + L + +        +   L  GL+ +  L+   ++         +Q 
Sbjct: 326 WLISSTPLGTTGLALAVEVPTAELYAPVVDTLETGLLFVPGLVLLGLLVLDWQLRPLTQR 385

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     R   A   SG  +   +   + +   P  + +LG     +         ++H++
Sbjct: 386 LHQANARVQNAFDYSGIGILMVNGQGEILDFNPAFSEMLGYTPAELR-QPHVVDDFLHLD 444

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR      L        G      R R  + ++  +   + P+ N +G +   +  A D+
Sbjct: 445 DRGTVAAQLGGMADTEVGAYCAHRRYRHKNGRYRMLQWHVSPVKNEDGAVTSIVCYALDV 504

Query: 520 TEQ 522
           T++
Sbjct: 505 TDE 507


>gi|159897159|ref|YP_001543406.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890198|gb|ABX03278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 682

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 146/592 (24%), Positives = 265/592 (44%), Gaps = 9/592 (1%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
             A+    + I        ++ ++     +Q +          +    D V   D     
Sbjct: 88  PTAIDILTLPISTESLVLTLKTIIERSNLTQRLSRVEVWMQTMLANVSDGVVAIDQHGKI 147

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVR 486
                    + G    S      N +  I  +  D    ++ + +       L +E  + 
Sbjct: 148 QWINSAAEHMTGWDYRSALQQDFNQVVVIRSSLNDQRIDVIAAALRNEPVFALPFERYLH 207

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
           A D     +   + P+ N++G     I I  D T Q +  E +   +  D+LTG+PNR+S
Sbjct: 208 ARDGHATSITEHVTPLLNNDGQNNGAIVILRDHTAQLQMEEALYYQSLHDSLTGLPNRRS 267

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-F 605
           F   L+  L+      +    ++++DID++K +ND LG  +GD +L  + +R+   L   
Sbjct: 268 FQLHLSRALEYQRHHHDYSFAIILLDIDEFKMVNDGLGYHIGDTMLTEIAQRLRRALYLP 327

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWT 664
            D++AR  G+ F I      +     + A  +R+    P  +   +EI    SIG    T
Sbjct: 328 GDVVARFDGDEFAIFFDRLPDLPAAFNAAQRIRQLFEDPFMIENGQEIFCNVSIGLELIT 387

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYL 722
            S++    +++NA+LA+Y AKH G   +E F  + + +    +  +  L LA++  E  L
Sbjct: 388 -SEVPIETVMRNADLALYRAKHTGRGGIEIFDQTLYANFSTRLHNETALRLALQRQEFRL 446

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              PII        G E LI+W HP     S  +F+ IAEE  +I  +  +MLE  A  +
Sbjct: 447 FAQPIIDFEHSHCTGFEILIRWAHPDGRLRSPGQFLDIAEETGLIIPLGWWMLEVAAEQL 506

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+  + M  + + IN++ + LL ++L   ++++  +  +   ++ L  +E  ++ N E
Sbjct: 507 ERWQADSMMQHMTLAINLSPRQLLHSQLLPTLKSIFERYQFPRQQLHLEITEGALL-NTE 565

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
           R+  +L  LR  G+ L +DDFGT  S L+YL   P +T+K + S +  +   ++ +AI+R
Sbjct: 566 RAEPILNALRHFGLHLHIDDFGTGYSSLTYLHRFPLNTIKIDRSFIQAALEDQRSLAIVR 625

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +II +A+ ++   IA+ I     I+ L  +GC   Q    + P+        
Sbjct: 626 TIINLAQTMQLATIAEGIETAEHIQVLRELGCQAGQGYFFSPPVPLEQAADF 677


>gi|108804381|ref|YP_644318.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765624|gb|ABG04506.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
          Length = 762

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 119/446 (26%), Positives = 216/446 (48%), Gaps = 7/446 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +   ++E+++  E +   A  D LTG+ NR  F DRL      +   D  R  V+++
Sbjct: 307 VVALLRTLSERERLQERLEQQALHDPLTGLANRALFSDRLAHAASRANPLDCGRLAVLML 366

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND LG  VGD +LVS+  RI   ++  D +ARL G+ F +++   ++     
Sbjct: 367 DLDGFKSVNDSLGHEVGDALLVSVAGRIRACVRPSDTVARLGGDEFAVLIEEISDVGAAV 426

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   +  P ++        AS+G A        +  +L++A+ AMY AK RG   
Sbjct: 427 RVAERILDRLGEPYSVGGVGRVAAASVGVAFGP--AREAKSLLRDADAAMYVAKERGKGR 484

Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            E F       R++++ ++ +L  A+E  E  + Y PI+     E+V +EAL++W+ P  
Sbjct: 485 YEVFEPRMRNARAEKLRLEAELRAALERGEFAVHYQPIVSFATGEVVEVEALVRWERPGR 544

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  +EF+ +AEE  +I  I  ++L    R +  W+       + + +N+++  L    
Sbjct: 545 GTVGPAEFLSVAEESGLIVPIGRWVLREACRQVREWQK-GGSRELALAVNLSASQLHHPR 603

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   ++  +  +      +KL  +E   + +   +   L  L  +G+ + LDDFG+  S 
Sbjct: 604 LVREVEEALGLSGLEARHLKLEITEQAAVEDAREAARRLEELSALGVRIALDDFGSGYSA 663

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   P DT+K + S + G      A  I+ ++I +AK++   + A+    E  +  L
Sbjct: 664 LSYLRTFPVDTLKIDRSFIEGIGRDLQATSIVGAVIALAKSLNMCVTAEGTETEEQLAHL 723

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             +GCD  Q  + + P     + + L
Sbjct: 724 RSLGCDLAQGYYFSRPASPEEVERKL 749


>gi|256822609|ref|YP_003146572.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256796148|gb|ACV26804.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kangiella koreensis DSM 16069]
          Length = 629

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 131/574 (22%), Positives = 248/574 (43%), Gaps = 21/574 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +   +         +     +  + +    D +   +           +  +L L +  +
Sbjct: 60  LQSKLTELEEVKSELEQSIRKLRVTMDAGYDGIVQVNSDGIPTAYNDTVLKMLNLTAREL 119

Query: 446 HGPI------RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                       +    +          L   +  +         V   D +F     + 
Sbjct: 120 QSLSYRKICQHLFKNIKNPE---VVINQLRKALMKQDD--SGNILVEHNDGRFFECKAKA 174

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                 +G     +    DIT+ K         A+ D LT +PNR  F +RL   LDL+ 
Sbjct: 175 ---LELDGQTQGLVWTIKDITDLKLKEREARYLAYHDELTNLPNRTLFFERLEHALDLAK 231

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             + L   V+ +D+D++K +ND  G A GD +L  + +RI   L+  D  ARL G+ F I
Sbjct: 232 RKEEL-LAVIFLDLDEFKTVNDTFGHAQGDLLLQKVAKRILVALREHDTFARLGGDEFVI 290

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L    +   I +    ++ ++  PI L   ++ +T S+G A +      + ++LK A++
Sbjct: 291 MLEDVEDREAIVNVLDRVKHALDTPITLGTNQVYITPSLGVAIYPEDGDDAQDLLKKADM 350

Query: 680 AMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY++K  G N    +     +    R+ ++  L  A+ NSE +L Y P   L D+ ++G
Sbjct: 351 AMYNSKKHGKNTYSFYSNHLEQYSTYRLSMRTALRRALRNSEFFLEYQPKFSLSDKRMMG 410

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EALI+W++ +   +S +EF+  AE   MI  I+ +++E+  RDI  W    +     + 
Sbjct: 411 VEALIRWNNKE-TLMSPNEFLNEAESNGMIIPISQWVIEQACRDIAHW-KGDSKACCPVS 468

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+ +      L + ++A +++     S I++  +E   + + E +   +  L  IG+ 
Sbjct: 469 INISPRYFQHGCLVDDLKACVNRFKIDASCIEIEITEQAFIPDIENAIKRMHELNDIGVK 528

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           +++DDFGT  S  +YL  +P   +K + S +    E   + +++  II +A     +++A
Sbjct: 529 ISIDDFGTGYSSFNYLMKLPVQQLKIDTSFIRSLEESEIQHSLVAEIIKIAHLFGLSVVA 588

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + +  E     L    CD  Q   + SP+  N  
Sbjct: 589 EGVEHEHIADLLMSYDCDLAQGFWLGSPIPANQF 622


>gi|254480327|ref|ZP_05093575.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039889|gb|EEB80548.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 763

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 233/447 (52%), Gaps = 19/447 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A+ D LT +PNR+ F ++L+ +L L+  +      ++ +D+D +K+IND L
Sbjct: 303 RTKNRLRKMAYYDALTSLPNRRLFTEQLSLLLKLAQRNKQT-LALLFLDLDNFKRINDSL 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILA------------RLSGNRFGIILISENNSLKIA 631
           G + GD +L  + +R+ + ++  D++A            RL G+ F ++L   +    + 
Sbjct: 362 GHSAGDLLLREVGQRLSKCVRDSDVVAHYADPTAKIDVSRLGGDEFTVVLNDLDAPESVG 421

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  +++ P+ +   E+ +T SIG A           +L+ ++ AMYHAK  G + 
Sbjct: 422 VVAERLILALSEPMLIDGHELVITPSIGIAIAPEHANEVEGLLRCSDTAMYHAKASGKST 481

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +  S   +  DR+ ++ DL  A++N EL L Y P +     ++VG EAL++W HP+ 
Sbjct: 482 YLVYESSMEEAGLDRLTLENDLRKAMDNDELVLFYQPQVDTRSGKVVGAEALLRWMHPEQ 541

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I   +F+ +AEE+ +I  +  +++    + + ++  +    P  + +N+++       
Sbjct: 542 GLIPPFKFIPLAEEMGLIGEMGDWVIREACKQVQTFAKKGVSLP-KVAVNVSALQFT-PS 599

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +++++ +    P+ ++L  +E VVMG+   S   L  L+ +G+SL++DDFGT  S 
Sbjct: 600 FTRRVKSILDELAVDPATLELELTEGVVMGDTNASVQALAELKDLGVSLSIDDFGTGYSS 659

Query: 870 LSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   P D +K + S +    ++E+  +++R+II MA+++   ++A+ +  +   + +
Sbjct: 660 LSYLSRFPLDELKIDRSFVIEANNSEQGASLVRAIIAMAQSLGLELVAEGVETDEQYEFM 719

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954
           T  G   IQ    + P+    +  LL 
Sbjct: 720 TTAGAHVIQGYMFSQPVPAEKLEPLLA 746


>gi|192359880|ref|YP_001981822.1| sensory box/GGDEF domain/EAL domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190686045|gb|ACE83723.1| sensory box/GGDEF domain/EAL domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 850

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 138/594 (23%), Positives = 270/594 (45%), Gaps = 35/594 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV------------------- 424
              +Q +    Y    +          +  S + +W +D+                    
Sbjct: 256 LVQLQDLSRELYARAALQESETSYKAFITNSSEAIWCYDMQPRVDTGLPIAEQVEQIAAS 315

Query: 425 RDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              V     +  +LG+     + G   +           N+   LD+F+      + ++ 
Sbjct: 316 AHLVEANRVLLNMLGVETLDDVLGQPLSESGS------TNYLFDLDTFIANGYQMVDHDI 369

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             +    +  +  I    +   +G + R  G   D+T +K+  + +   +  D+LTG+PN
Sbjct: 370 TRQDERGKKFYFQISCTGII-EDGYLRRIWGTTKDVTTRKRYEDKLRHQSLHDSLTGLPN 428

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+     + +  +           +M+ID+D++K+IND LG  VGD +L  +  R+   +
Sbjct: 429 REKLYQDMASCFE--QRTAEQISALMLIDLDRFKEINDTLGHNVGDRLLQMIGPRLAAEM 486

Query: 604 KF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
              P  +ARL G+ F + L    ++ +   F   +  ++A   +L      ++ASIG A 
Sbjct: 487 AEVPGTVARLGGDEFAVFLPRIRSTHQAVVFGHRILDALAQEYDLEVFCTQMSASIGIAI 546

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                     +++ A++AMY+AK +  G  + S         R+ +  +L  A+  ++L 
Sbjct: 547 APYQAQDHHALMRYADIAMYYAKSQMLGLSIYSPDYDPHSPKRLAMMSELGRAIRENQLC 606

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P + L +    G EALI+W HP+ G +   +F+ IAE   +I  +  ++LE     
Sbjct: 607 LYYQPKVVLDECRCYGFEALIRWIHPELGFVPPDDFIPIAEFTSLIHPLTAWVLENSIEQ 666

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W+ Q     + + +N+++++L+D  + + ++ L++K     +R++L  +ES +M +P
Sbjct: 667 CRHWQLQGLN--LSVAVNLSARNLMDENIPKLVERLLNKYQLPAARLELEITESSIMSDP 724

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
            R+  +L  L ++G+ L++DDFGT  S L+YL  +P  T+K + S +       +   I+
Sbjct: 725 NRALRILQHLHELGVHLSIDDFGTGYSSLAYLKRLPVQTLKIDNSFVRNMLGDLQDELIV 784

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            S I +A N+  T++A+ +  E  +K L  MGCD +Q   +  P+  N+  + L
Sbjct: 785 NSTIHLAHNLGLTVVAEGVENEELMKRLHDMGCDEVQGYFIGRPMTVNNADQWL 838


>gi|254517113|ref|ZP_05129171.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [gamma proteobacterium NOR5-3]
 gi|219674618|gb|EED30986.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 228/460 (49%), Gaps = 23/460 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+  + +   A+ D LT +PNR+SF ++L  IL  S   +     ++ ID+D +K+IND
Sbjct: 138 LKRQEDRLRYLAYFDPLTSLPNRRSFNEQLNRILKRSQRLNTFS-ALLFIDLDNFKRIND 196

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDIL------------------ARLSGNRFGIILIS 623
            +G   GD +LV +++R+   L+  D +                  ARL G+ F ++L  
Sbjct: 197 SIGHGRGDRLLVEISKRLINELREDDAISYYSDSSAEEEHDGNTEIARLGGDEFTVVLAD 256

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +   A+ + K+++ PI L      VT SIG A +      +  +++NA+ AMY 
Sbjct: 257 VLHTDDVERIALRIMKTLSEPIPLQTHNPVVTPSIGIAMYPQDGEDAESLVRNADTAMYA 316

Query: 684 AKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      +         + + ++EDL  A+   +L L Y P +  +   +V LEAL
Sbjct: 317 AKADGRACFRFYNEEMNARSVEHLKLEEDLREAMRTDQLELRYQPQVETVTGAVVSLEAL 376

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G IS ++F+ +AE    I  +  ++L+ +AR  + W D   +    + +NI+
Sbjct: 377 VRWKHPERGMISPADFIPVAESTGQIIELGEWVLKEVARHCVYW-DSIGLASFRVCVNIS 435

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                  +L   ++  + ++   P R++L  +ES +M + E + L L +L+ +G+ L +D
Sbjct: 436 PLQFNQPDLLHYIKGFLGRSGLDPHRLELELTESAIMTDGESNILKLSQLKSLGLDLAVD 495

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYG 920
           DFGT  S LSYL   P +T+K + S +         AI+ +II +AK +    IA+ I  
Sbjct: 496 DFGTGYSSLSYLRRFPINTLKIDQSFVADMNSADGAAIVDAIIALAKTLNMRSIAEGIET 555

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           E  +  L + G D +Q  + A PL    +   + + +   
Sbjct: 556 EEQLAYLAKRGVDLMQGFYFARPLYPEDVPNAIAQDYSET 595


>gi|91203573|emb|CAJ71226.1| conserved hypothetical response regulator protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 685

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 257/574 (44%), Gaps = 16/574 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLASG 443
            IQ           +    ER    + G  D    +  D        +P I  ILG    
Sbjct: 116 TIQQAKIRIQTETELHKSEERYRRLIEGLQDNYFFFTRDASGVFTYISPSIKNILGYTPE 175

Query: 444 SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +   R +L  ++  ND         S  G ++   + E  +   +     + ++  P+
Sbjct: 176 EFYTRYREYLTDHLVNNDAAQCLA--RSVKGIKQPPYEIE--MYHKNGATRTLQMQEAPV 231

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +S+ +++   GIA DITE K S   ++  A  D LT + NR+ F + L   L  +  + 
Sbjct: 232 FDSSKNVISIEGIARDITEIKTSQSQLVFLADHDPLTCLFNRRRFKEELELRLLEAQRN- 290

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +++  ++ +D+D +K +ND LG   GD++L+ L+  + E L+  DILARL G+ F +IL 
Sbjct: 291 HIKGALLFLDLDNFKYVNDTLGHQHGDELLIKLSCILKERLRQTDILARLGGDEFAVILP 350

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +     +    +  + +     + L     + +T SIG A + +   T+  +L NA++AM
Sbjct: 351 N-TEEEQAQHISKQLVELTRNCLALDSLNPLHITVSIGIAMFPAHGDTAETLLANADMAM 409

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G +    F +            K  + +A+E +   L   PII +   +I   E
Sbjct: 410 YQAKDEGRDRGCIFSLEHKIHIETQYDWKRRIKIALEQNSFALYLQPIINVKTRKITAYE 469

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++        +   +F+  AE   +I  I+ +++    R I     + +   IF+ IN
Sbjct: 470 VLLRLTEKNQEVVPPLKFLGTAERFGIIHEIDRWVVVNAIRIIKEL--KLHENGIFLEIN 527

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ K   DNEL   ++  I + +  P  +    +E+ ++ N  +++  +  L+ IG    
Sbjct: 528 LSGKAFSDNELLSIIKREIGENILRPEMLIFEITETAIIENIAKAQHFIATLKSIGCRFA 587

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           LDDFG+  S  +YL ++P D +K +GS +   ++      +++ ++  A+ ++   IA+ 
Sbjct: 588 LDDFGSGFSSFNYLKHLPVDYLKIDGSFIQHLSQNSVDQHLVKGMVEAARGLKKLTIAEF 647

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  +   + L  +G DY Q  +   PL     L+
Sbjct: 648 VETKETFQLLKEIGIDYAQGHYFGKPLSVCDALQ 681


>gi|115523851|ref|YP_780762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115517798|gb|ABJ05782.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 783

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 151/657 (22%), Positives = 287/657 (43%), Gaps = 20/657 (3%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + Y          +T  + ++     +     +    A+L     I +    +G     T
Sbjct: 103 TLYAEPPLVGFLLLTRRAPIVVGGVTVGLLEYEAQFDAMLHKLIVIALISSLLGACAYYT 162

Query: 360 KR----------LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
            R          L +      L+      +      + +           + +   +   
Sbjct: 163 VRTLPLRALDRTLRDLDDAHRLIAESNATLCDQNGVLTERERELRAAQSVLKTRSNQLLD 222

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A        W + +    V   P++  +LG AS          +     +  +       
Sbjct: 223 AQRLGRIGDWSYRVGNAEVWWAPELRHLLGYASNDFVSTRDAVMALHVGDGANRVLASQA 282

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +   +     + +++  D       +  + M+N+ G I+ + G   DI+E+K + E +
Sbjct: 283 EVMRTGKVS-SVDVKLKRGDGTIGDFAVISKAMTNAEGRIVGFTGTIQDISERKAAEEQL 341

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+ NR  F   +  +L  S          +++D+D +K+IND +G A GD
Sbjct: 342 ERLAYYDPLTGLANRALFHREIAEVLMRSGRHGLQAAL-LLLDLDGFKEINDTMGHAAGD 400

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L  +   I   L   D L+R+ G+ F IIL    +  ++   A A+ ++I+ PI++  
Sbjct: 401 ELLRKVAHLISRTLGNGDFLSRIGGDEFAIILTD-GDRGEVERTARAIIEAISRPIDIDR 459

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707
            EI ++ SIG AS      T +++L++A+LA+Y AK  G      F  +       ++ +
Sbjct: 460 GEINISTSIGIASMPRDGSTLTDVLRSADLALYRAKEDGRGCFRFFEPTMSAVVQHKMAL 519

Query: 708 KEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             DL  A   N+ L + Y P I L   +++  EAL +W HP +G++  SEF+ IAE   +
Sbjct: 520 SRDLRHALGGNAGLDVHYQPQIELSSGQVISYEALARWTHPSFGDVPPSEFIPIAESSNL 579

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  + L++L R AR   +W DQ   P   + +N+++  +   +    +  ++ +T   P 
Sbjct: 580 ICDLGLWVLRRAARQAKAWLDQ-GEPARSVAVNVSAAQIWHTDFAADVMQVLQETGLPPQ 638

Query: 827 RIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            + L  +ES++  + E R R +L  L+++G+ L LDDFGT  S   YL  +PFDT+K + 
Sbjct: 639 LLCLELTESLLADHAEGRVRSVLTELKRLGVRLALDDFGTGYSSFGYLTQLPFDTLKIDR 698

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             + G      A  +L+ +I + + +  TI+ + +    ++  L  + CD +Q  ++
Sbjct: 699 VFIKGIAHSDRARRLLQGVIALGRGLGMTILMEGVEQAEELAVLAELDCDVVQGYYL 755


>gi|307321688|ref|ZP_07601078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306892652|gb|EFN23448.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti AK83]
          Length = 772

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ + I   A  D LTG+PNR  F +++  +L+     D     +  +D+D +K IN
Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQW-AVLAFLDLDDFKLIN 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
           D LG A GD++L  +  R+   ++  D + R+ G+ F I+L         +      +R 
Sbjct: 391 DSLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRT 450

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +IAMP+ L  R + V+ S+G A + +   T+ E+L NA++AMY AK  G N+++ F    
Sbjct: 451 AIAMPVQLQGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEEM 510

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +++  +E+L  A+   E  L + P + L    I   EAL++W HP  G IS + F
Sbjct: 511 AARAHEKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAF 570

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  ++L    R + +W+D    PP+ + +N++++   +      + A+
Sbjct: 571 IPLAEETGLIVPIGDWILRTACRQLKAWQDAGL-PPLIVSVNVSARQFRERNWAARVAAV 629

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T      ++L  +ES++M +   +   +  L  IG+ L +DDFGT  S LS L   P
Sbjct: 630 LEETCLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFP 689

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +T        +AI  +II +A+ +   +IA+ +  E  ++ L + GCD I
Sbjct: 690 VRRLKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCDEI 749

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL       LL   
Sbjct: 750 QGYFFSQPLPGEDFEVLLSSE 770



 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 456 IHI-NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           +H               +         E R +   D    W++    P+ + +G I+  +
Sbjct: 100 LHPHEFAQAVADTERRVLETGEPIFGIEERAIVTKDRD-RWLMTSKVPLRSKSGRIIGIV 158

Query: 514 GIANDITEQKKSLEGILCNAF 534
           GI+ DI+++K +   +   A 
Sbjct: 159 GISRDISDRKAAERLLEGQAR 179


>gi|109898000|ref|YP_661255.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
            T6c]
 gi|109700281|gb|ABG40201.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
            T6c]
          Length = 1524

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 133/563 (23%), Positives = 262/563 (46%), Gaps = 16/563 (2%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
              D      A   + D V   +     +           +        I + L  ++ +D
Sbjct: 966  QEDLRLFGEAYKHTRDWVLVCNRHTVPMAANQAFCNTFNIDEQQ---DIASQLKLVY-DD 1021

Query: 461  RDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIA 516
            +        S +         + E ++   + +   +++ I+ +   N   DI  Y+ I 
Sbjct: 1022 QQAGLLSFWSKLESLEASEDWRGEDQIMLQNEEVRDVLVYIKAVACINDVTDIDSYLIIL 1081

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E KK+ + ++  A  D LTG+PNR   LDR+   +  +    +    +  ID+DK+
Sbjct: 1082 SDISEHKKAQQALIKLANFDALTGLPNRALLLDRVDHAIYQAQRSAST-LGLFFIDLDKF 1140

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K++ND LG   GD +L  ++ R+  LL+  D +ARL G+ F +++ + +    +   A  
Sbjct: 1141 KQVNDSLGHNAGDTLLQEISARLLNLLRKEDTIARLGGDEFVVLIENVHTIDDLTHLASQ 1200

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            + + I  P+ L    ++V++SIG A +      + E+L+NA++AMYHAK  G +H + F 
Sbjct: 1201 IIEIIDTPVQLENHLVSVSSSIGIALYPDDAQDAQELLQNADIAMYHAKENGRSHFQFFT 1260

Query: 697  VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                     R+ ++ DL  A  + +L   Y PII +   +I G E L++W     G +S 
Sbjct: 1261 AKMNVLAQQRLALESDLKYAHSHQQLENYYQPIIDISRNKIAGFELLMRWFTDT-GKVSP 1319

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ +AEEL +I+++ L  +ER       W+        ++ +N++++     +  + +
Sbjct: 1320 GRFIPVAEELGLIESMTLQAMERALPMFKHWQANGFDG--YLSVNLSARHFESLQSIKDV 1377

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             A ++        ++   +ES +M + +++ + +  LR+ G S+ LDDFGT  S L YL 
Sbjct: 1378 IAFLASNALPVEMVRFEITESALMKDYQKAIIYMKHLREAGFSIALDDFGTGYSSLKYLK 1437

Query: 875  YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P   +K + S +      +   A++ +I+ MA++++   +A+ I  +  +       C
Sbjct: 1438 EFPLSVIKVDKSFVDDIGINKNNEALIETILRMAQSLDMYCVAEGIETKEQVAFFKEHDC 1497

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
             ++Q  + + P+       L+ E
Sbjct: 1498 QFLQGFYFSRPVALADTFALIDE 1520



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 2/155 (1%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           LI  +                +       R +LA+  S   VW+WD   D V  +     
Sbjct: 817 LIAYIFWKMRSLQAQRLLSAHKEAVQSKGRLTLALQASNSDVWEWDEKSDTVQAS-RFHD 875

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            LG  + +        L  IH  D++ +     SF+          +R+R+ +  + W  
Sbjct: 876 ELGYENKTGAVSREEHLSLIHNRDKEMYLARWHSFLEQEDRVFDVTYRMRSHNGHWLWFR 935

Query: 497 IRIRPMSNSNGDI-LRYIGIANDITEQKKSLEGIL 530
                      +   R +G   +IT+     E + 
Sbjct: 936 DVGNVTGGVASEHNQRVVGTYTNITDSIAEQEDLR 970


>gi|188583702|ref|YP_001927147.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179347200|gb|ACB82612.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 574

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/451 (26%), Positives = 211/451 (46%), Gaps = 18/451 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +     D+TE           A Q+ LTG+ NR    DRL   L  +A  D     V++
Sbjct: 122 GFALTFEDVTEL----LRGAALARQEPLTGLCNRVGLHDRLDAALAEAARTD-APLAVLM 176

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN---- 626
           +D+D++K +ND LG  VGD +L  +  R+ +  +  D++ARL G+ F II    ++    
Sbjct: 177 LDLDRFKAVNDTLGHPVGDALLRKVAERLRKATRSGDVVARLGGDEFAIIQGGPSSGAEQ 236

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +   +     +    + V  S+G A   +    + ++LK+A+LA+Y AK 
Sbjct: 237 PQAAEALARRLVDLVGRTYVVDGHMLNVGVSVGVALSPADGRNADDLLKHADLALYRAKA 296

Query: 687 RGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      F  +     +    ++ DL  A+   +  L + P I+L   +IVG EAL++W
Sbjct: 297 EGRGTHRFFEPAMNAQMQARRSLEIDLRRALALKQFDLAFQPQIQLETGQIVGFEALLRW 356

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP+ G +S + F+ +AEE+ +I  I  + L    R+   W       P  I +N++   
Sbjct: 357 NHPERGPVSPALFIPLAEEIGLIVGIGEWALRTACREAAGW-----TQPASIAVNLSPVQ 411

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L E +  ++++T   P+R++L  +E  ++ N +    +L  LR +G+ +++DDFG
Sbjct: 412 FRGGRLVETVMHVLAQTGLDPARLELEITEGALLENTDSVLDVLNGLRALGVKISMDDFG 471

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   PFD +K + S + G        AI+R+I  +  ++     A+ +    
Sbjct: 472 TGYSSLSYLQKFPFDKIKIDQSFVRGMEGNAECGAIVRAIARLGASLGMRTTAEGVETAT 531

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  +   GC  +Q      P+       LL
Sbjct: 532 QLDAIRAEGCTEVQGYLTGRPMPAAQAAALL 562


>gi|298485243|ref|ZP_07003336.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160231|gb|EFI01259.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 897

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 150/571 (26%), Positives = 270/571 (47%), Gaps = 13/571 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSDEVSGHK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L         D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFVRDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +  +       A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPSDVLARFASNEFAVLLDN-TDQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  I  ++  +  R             + + IN++ K   D EL   +
Sbjct: 689 DQFISVAEETGLIIPIGKWVARQSCRMSKDLTAAGFG-NLQVAINVSPKQFSDPELVSSI 747

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +    PS ++L  +E +++   E +R  L  L+K+G+SL ++DFGT  S  SYL 
Sbjct: 748 AAILREEELDPSLLELELTEGLLLEATEDTRQQLDSLKKLGLSLAMNDFGTGYSSFSYLK 807

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +      E  + I  ++I MA N++  ++A+ I     +  L R  C
Sbjct: 808 KFPIDVIKIDRSFIRDIPDDEDDMEITSAVIAMAHNLKLKVVAEGIETAAQLTFLRRHRC 867

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D  Q      P+    +++ LK R+P   + 
Sbjct: 868 DVGQGYLFDKPIPGEELIEKLK-RYPRRPSA 897


>gi|113970492|ref|YP_734285.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113885176|gb|ABI39228.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 697

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 138/569 (24%), Positives = 264/569 (46%), Gaps = 10/569 (1%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +  I    +  +  +      V+   I    +     I  +   +   + G     
Sbjct: 131 RRSIADRIGEHNQLLNTLLSNIDAFVYMKSIDGKYLYANHKIVELHNRSLSDIIGKTD-- 188

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L  ++ N  D    +          +   E  V  AD           P+     +    
Sbjct: 189 LELMNENFADPLMEMDKQVFQSGLRKSTQEI-VVGADGIERSFWSIKVPIKLPGQEPA-L 246

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +G + +ITE  +  E +      DNLTG+PN+  F   L   LD +      +  V++I+
Sbjct: 247 VGFSTEITELLQLKEHLEYQRVTDNLTGLPNQHKFEQSLQLALDNAKRSKQ-QLAVLLIN 305

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            D++K +N+ LG    ++++ +  RR+ +       LAR S   F I+L    ++ ++A 
Sbjct: 306 FDQFKYVNNALGHESANEIIKAAARRLDQCDWLSGSLARFSSGDFAILLAKTGSADEVAM 365

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +R   A P  +  +   +TAS+G +S+ +       ++K+AE AMYHAK +G + +
Sbjct: 366 VAERLRMVCAEPYRVAGQVFHLTASVGVSSYPADGDMVWHLIKHAESAMYHAKDQGRDQI 425

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +   +S   S+R++++ DL +A+   +  L Y P IRL D+++ G+EAL++W+ P  G
Sbjct: 426 QFYSAHLSKAVSERILLERDLRIALIEKQFELYYQPKIRLADKQVAGVEALLRWNRPMHG 485

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S + F+ +AE L +I  I  +++E   + + +W  Q     I I +N++   L  + L
Sbjct: 486 FMSPALFIPLAESLGLINQIGDWVIETACQQLSAWSTQGLGE-IQIAVNLSPSQLTSSTL 544

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++ L+++    P+ +++  +ES++M NPE +   L  LR++ I L +DDFGT  S +
Sbjct: 545 LDRVKLLLAQYAIKPNMLEMEVTESMMMHNPEEAISKLQALRELNIQLYIDDFGTGYSSM 604

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P + +K + S +       +   +   II +A  +   ++A+ +  +     L 
Sbjct: 605 SYLKRLPINALKLDRSFIIHMATDPRDADVCEGIIELAHKLGLDVVAEGVETQAQYDALL 664

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
             GCD IQ    + PL    + + L +  
Sbjct: 665 ERGCDIIQGYLYSRPLPIEQVSRFLLKHL 693



 Score = 38.4 bits (88), Expect = 7.1,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 20/141 (14%)

Query: 398 QGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIA--------TILGLASGSMHG 447
           Q   +  +   LA  +  +G  ++  D           +          ILG  +     
Sbjct: 7   QDADTQVQLIQLAPLLNQAGVYIFTKDHADRYTFVNEAVCKFYQASLPEILGQKAEQFL- 65

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   +   D+          +      L  E  V     +         P+ + NG
Sbjct: 66  -ELGLAKILREGDK--------RVLQQGEELLMEEELVVRKTREKRLFWSIRIPLRDING 116

Query: 508 DILRYIGIANDITEQKKSLEG 528
           DI    GI+ DIT ++   + 
Sbjct: 117 DISGLFGISIDITGRRSIADR 137


>gi|330466330|ref|YP_004404073.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
 gi|328809301|gb|AEB43473.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
          Length = 711

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/574 (22%), Positives = 247/574 (43%), Gaps = 18/574 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + +     R      G+   +   D+    +      A +LG +   M     N
Sbjct: 143 ARDDVERALRDSEARFRAVFRGAAIGIGIADVDGQIIDVNQPFADMLGYSIEEM--RQLN 200

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H +D      +    +  +    + E R    D    W  + +  + + +G    
Sbjct: 201 VTALFHHDDAPGMWELYGELIEGKHESARVEKRYYRKDGTSVWTDLAVSLIRHDDGRPRF 260

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I +A DIT++ +    +   A  D LT +PNR  F + L+ +L  S         V  +
Sbjct: 261 TIAVAEDITQRYELQRRLRFQALHDPLTELPNRTLFFETLSRLLSASGR-----VGVCFL 315

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKI 630
           D+D +K IND LG  VGD +L+++ RR+   +      +AR+ G+ F I++  +     +
Sbjct: 316 DLDGFKAINDSLGHDVGDRLLMTIARRLAGCVAEYGYLVARMGGDEFVILVDGDAGVDNM 375

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A     +++ P+ + + ++ V+AS+G  +      +++E++K A+  +Y AK  G  
Sbjct: 376 IAVAELALTAVSAPVFIDDHQLMVSASVGIVASDLVGTSAAELMKAADTTLYWAKAEGRG 435

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +       D     +   L +A++  E  L Y PI+ L+D  ++ +EAL++W HP+
Sbjct: 436 RWAVYDPERSARDIARSTLLAGLPVALDRDEFVLHYQPIVSLLDGRMLAVEALVRWQHPE 495

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I    F+ +AEE  +I  +  ++L +  RD   W        + + +N+A++     
Sbjct: 496 LGLIGPDRFIGLAEETGLIVRLGEWVLRQACRDARRWHVDFPEARLVVSVNLAARQADAP 555

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            + + +   +S +      ++L  +ES VMG+       L RL ++G+ L +DDFGT  S
Sbjct: 556 VIVDTVADALSSSGLPAELLQLELTESAVMGSGGEPLRTLYRLAELGVRLAVDDFGTGYS 615

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--------TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            L+YL  +P   +K     + G           +   I+ +++ +A  +E  + A+ +  
Sbjct: 616 NLAYLRRLPITCLKLAAPFVEGIRGDEPDAADHRDERIVDALVRLAHALELWVTAEAVET 675

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           E   + L  + CD  Q      P    +I   L 
Sbjct: 676 EPQAERLRALRCDSAQGRLFGPPAPAAAISTRLA 709


>gi|229541268|ref|ZP_04430328.1| diguanylate cyclase/phosphodiesterase [Bacillus coagulans 36D1]
 gi|229325688|gb|EEN91363.1| diguanylate cyclase/phosphodiesterase [Bacillus coagulans 36D1]
          Length = 559

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 120/529 (22%), Positives = 235/529 (44%), Gaps = 21/529 (3%)

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           P    +       M    +     +   +   F     + +   +     +F +  +D  
Sbjct: 43  PAFKFVYVNKEEQMEKTGKFLQDVLEEEEAARFEYFCQTALEDNKA---VDF-IHHSD-A 97

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ---DNLTGIPNRQSFL 548
              +   +  M+         I I  D+T      E +L +A     D LTG+ NR + L
Sbjct: 98  RRILHTSLAGMNGGE----WVIAITRDVTAL-LDGERMLPDARTYQLDPLTGLWNRHALL 152

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL      +       P V+ ID+D++K  ND+LG  VGD++L  +  R+ +L      
Sbjct: 153 DRLNRKTAEAKK-GAPHPAVLYIDLDRFKYFNDILGQHVGDEILKRIAIRLKQLPFSDYE 211

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R  G+ F ++     +  ++   A  +      P  +   +  +T S+G + +     
Sbjct: 212 VYRQGGDEFIVLTAGC-SREEVKQMAEQILALFYDPFKIEGEDYFLTPSVGISLFPEDGE 270

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHP 726
               ++K+A+ A++  K RG  H   +         + ++++  L  A+E +EL + Y P
Sbjct: 271 DGETLIKHADTALFKVKERGKGHFLFYSKKMDADFHNYILMEAHLRRAIEKNELAVHYQP 330

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            ++L   +I   EAL++W +PK+GN+   +F+ +AEE  +I +I  ++++ +   I  WR
Sbjct: 331 QVQLDTGKIKSFEALLRWRNPKFGNVPPLKFIPLAEETGLITSIGAWVIDHVCAQIAQWR 390

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            Q       + +NI+ K  LD  L   +   + K     S +++  +E   M +      
Sbjct: 391 -QKGWAGFRVAVNISPKQFLDPGLAGLIGRTLEKYKLPASVLEIEITEGA-MEDKGHILK 448

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           +L  L+++G+++++DDFGT  S L+YL   P D +K + S +     ++K  AI ++II 
Sbjct: 449 VLSSLKEMGLTISVDDFGTGYSSLNYLKKFPVDILKIDQSFVRELENSQKDAAITKTIIH 508

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A  +   ++A+ +  +  ++ L    C   Q    + P+    + K L
Sbjct: 509 LAHQLGLEVVAEGVEEQGQVEFLQSARCQKAQGYFFSRPVPAEEVEKQL 557


>gi|332993933|gb|AEF03988.1| sensory box protein [Alteromonas sp. SN2]
          Length = 1514

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/587 (22%), Positives = 255/587 (43%), Gaps = 32/587 (5%)

Query: 385  TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +   L      +           ++    + V+        ++      +  G     
Sbjct: 939  VRMTGTLKNINHLKEAEEQLNLFKRSIENISEGVFITTTQFKFISVNNAYCSYTGETREQ 998

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  ++  +++ +    F   +   +  + G    E      + + + M + I  + +
Sbjct: 999  ALASYLHF--HLYPD---AFTEEIKKTLKTK-GNWSGEVESVRVNGERYEMELNIDAVHD 1052

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             +G I  ++G+ +DIT +K + + +L  A  D LT +PNR  +          +      
Sbjct: 1053 DDGKISHFVGVFSDITSRKSTEKELLKLANIDPLTELPNRSFY-----QASHQNLVRKGA 1107

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              T++ +D+D +KKIND LG   GD ++  + +R+  +        RL G+ F +++   
Sbjct: 1108 PHTLLCLDMDNFKKINDSLGHQTGDILIKQIAKRLQRITGKNATCYRLGGDEFSVLMEDS 1167

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +   +  +A  +  ++A P  + ++E  + AS+G A +     T  EMLKNA+ AMY A
Sbjct: 1168 ADIHTVTHYAQNLLDTLARPFIINKQEFVLGASLGIAFFPDDGNTPQEMLKNADTAMYFA 1227

Query: 685  KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K+ GGN  + F   ++     ++ I+  +   +++    + Y P + +   ++V +EAL+
Sbjct: 1228 KNNGGNSYQFFSGEMNQNAVRQLQIENLIRQGIKDDLFTVYYQPKVDIASGKLVSMEALV 1287

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +++HP+ G +S  +F+ +AE+   I  I   +L +   D   W  Q       + +NI+ 
Sbjct: 1288 RFEHPQKGIVSPGQFIPLAEQTGQIIEIGEQVLRKACVDTKRWVSQGLFTG-RVAVNISV 1346

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            K     +L + +  ++S+   SP  ++   +E  +M +PE    ++ RLR+ GI L LDD
Sbjct: 1347 KQFELPDLDDRINRILSEVGLSPLHLECEITEGTLMEDPENGLRMMSRLRERGIHLALDD 1406

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT-------- 912
            FGT  S L+YL   P +T+K + + +    +      +  +II +A N+           
Sbjct: 1407 FGTGYSSLAYLKRFPLNTLKIDKAFIDDIAKSSVDRHMAAAIINIAHNLGLKVVAEGVEE 1466

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                    E  +  L R  C+ +Q    + PL      KLL E   L
Sbjct: 1467 --------EEQLNILRRYDCEMLQGFLYSRPLNAERFEKLLSENQKL 1505



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 4/170 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVW 419
            +       ++      +++ I    I         +Q  I    ER  L +  SGD +W
Sbjct: 790 YIARPPWLHSVALVFYALILTIVLAFIIRQYQLRKSNQLSIRESEERLKLTLWSSGDELW 849

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           DWD+ R +V       T L      +          IH ND    R  L S +  +    
Sbjct: 850 DWDVYRGQVYRANTWGT-LDFPQDDIRTTGAYDAN-IHPNDIGRVRDALRSHLEGKSDFY 907

Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
           +  +R +   NQ+ W++ R + +  + N   +R  G   +I   K++ E 
Sbjct: 908 ELAYRAKTFKNQWIWLLDRGKVVERDHNQQPVRMTGTLKNINHLKEAEEQ 957


>gi|114047727|ref|YP_738277.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113889169|gb|ABI43220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 697

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/569 (23%), Positives = 265/569 (46%), Gaps = 10/569 (1%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +  I    +  +  +      V+   I    +     I  +   +   + G     
Sbjct: 131 RRSIADRIGEHNQLLNTLLSNIDAFVYMKSIDGKYLYANHKIVELHNRSLSDIIGKTD-- 188

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L  ++ N  D    +          + + E  V  AD           P+     +    
Sbjct: 189 LELMNENFADPLMEMDKQVFQSGLRKSKQEI-VVGADGIERSFWSIKVPIKLPGQEPA-L 246

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +G + +ITE  +  E +      DNLTG+PN+  F   L   LD +      +  V++I+
Sbjct: 247 VGFSTEITELLQLKEHLEYQRVTDNLTGLPNQHKFEQSLQLALDNAKRSKQ-QLAVLLIN 305

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            D++K +N+ LG    ++++ +  RR+ +       LAR S   F I+L    ++ ++A 
Sbjct: 306 FDQFKYVNNALGHESANEIIKAAARRLDQCDWLSGSLARFSSGDFAILLAKTGSADEVAM 365

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +R   + P  +  +   +TAS+G +S+ +       ++K+AE AMYHAK +G + +
Sbjct: 366 VAERLRMVCSEPYRVAGQVFHLTASVGVSSYPADGDMVWHLIKHAESAMYHAKDQGRDQI 425

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +   +S   S+R++++ DL +A+   +  L Y P IRL D+++ G+EAL++W+ P  G
Sbjct: 426 QFYSAHLSKAVSERILLERDLRIALIEKQFELYYQPKIRLADKQVAGVEALLRWNRPMHG 485

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S + F+ +AE L +I  I  +++E   + + +W  Q     + I +N++   L  + L
Sbjct: 486 FMSPALFIPLAESLGLINQIGDWVIETACQQLSAWSTQGLGE-VQIAVNLSPSQLTSSTL 544

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++ L+++    P+ +++  +ES++M NPE +   L  LR++ I L +DDFGT  S +
Sbjct: 545 LDRVKLLLAQYAIKPNMLEMEVTESMMMHNPEEAISKLQALRELNIQLYIDDFGTGYSSM 604

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P + +K + S +       +   +   II +A  +   ++A+ +  +     L 
Sbjct: 605 SYLKRLPINALKLDRSFIIHMATDPRDADVCEGIIELAHKLGLDVVAEGVETQAQYDALL 664

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
             GCD IQ    + PL    + + L +  
Sbjct: 665 ERGCDIIQGYLYSRPLPIEQVSRFLLKHL 693



 Score = 40.3 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 20/141 (14%)

Query: 398 QGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIA--------TILGLASGSMHG 447
           Q   +  +   LA  +  +G  ++  D           +          ILG  +     
Sbjct: 7   QDADTQVQLIQLAPLLNQAGVYIFTKDHADRYTFVNEAVCKFYQASLPEILGQKAEQFL- 65

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   +   D+          +   +  L  E  V     +         P+ + NG
Sbjct: 66  -ELGLAKILREGDK--------RVLQQGQELLMEEELVVRKTREKRLFWSIRIPLRDING 116

Query: 508 DILRYIGIANDITEQKKSLEG 528
           DI    GI+ DIT ++   + 
Sbjct: 117 DISGLFGISIDITGRRSIADR 137


>gi|148358887|ref|YP_001250094.1| inner membrane protein/sensory box protein LssE [Legionella
           pneumophila str. Corby]
 gi|296106935|ref|YP_003618635.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280660|gb|ABQ54748.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila str. Corby]
 gi|295648836|gb|ADG24683.1| inner membrane protein PLUS sensory box protein LssE [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 526

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 134/498 (26%), Positives = 246/498 (49%), Gaps = 16/498 (3%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + F   +       +     E      D +      R       +  I+  +    D+T 
Sbjct: 29  EEFLKQIKELYNNPKQESFDELHF--KDGKIF---ERYSQPHWLDNKIVGRVWSYRDVT- 82

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
                  +   A  D+LTG+PNR +  DRL   ++      N   +V  +DID +K IND
Sbjct: 83  ---LRTRLAYQANHDSLTGLPNRTALYDRLEHAINYCKRL-NTSLSVFFLDIDNFKLIND 138

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L   +RR+   ++  D +AR  G+ F ++LI       +   A  + K++
Sbjct: 139 SLGHDAGDILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLI-TTEPKDVILVAQNILKAV 197

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A PI L  +E+ VT SIG + +    I ++ +LKN++ AMY AK  G N+ + +  S  +
Sbjct: 198 AQPIKLPTQEVIVTTSIGISLFPKDGIDANTLLKNSDTAMYLAKKEGRNNFQFYNNSINQ 257

Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                ++    +  A++N+E +++Y PI  L + E+VG EALI+W HP  G +S  EF+ 
Sbjct: 258 QSLKRLEIQTQIHNAIKNNEFFILYQPIYNLRNGELVGAEALIRWGHPAIGLLSPDEFIP 317

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  ++L        +W+    +P I I +N++ + L ++   E  ++++ 
Sbjct: 318 IAEETGLINQVGEWVLRNACIQNKTWQ-LMGLPHISISVNVSWRQLKNSNFIEIAESVLK 376

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P  +++ F+ES ++        +L ++ ++GI + +DDFGT  S LSYL   PF+
Sbjct: 377 ESRLDPQYLEIEFTESTMIQKSTPIDSMLVKISQLGIKMAIDDFGTGYSNLSYLKTFPFN 436

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    +     +I+ +II MA ++E  ++A+ +        + + GCD +Q 
Sbjct: 437 KLKIDRSFIQNCTTNPNDASIVEAIIAMAHSLELKVLAEGVDTIDKAFFMHQHGCDEVQG 496

Query: 938 SHVASPLGFNSILKLLKE 955
                P+  +  +KL+++
Sbjct: 497 FLYGLPVKADQFVKLMQK 514


>gi|119898976|ref|YP_934189.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119671389|emb|CAL95302.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 691

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 211/441 (47%), Gaps = 6/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +         A  D+LTG+PNR  F +   + L  +    +    +M +D+D++K+
Sbjct: 244 IDRLRDERSRAYQLASHDHLTGLPNRLLFTELANSHLSRARRS-HAPFVMMFLDLDRFKR 302

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L  +  R+ + ++  DI+ARL G+ F ++L   +     +  A  + 
Sbjct: 303 INDTLGHRVGDLLLQEVALRLRQTVRETDIVARLGGDEFVLLLTELDALDDASRVARKLI 362

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++I  P+ L   EI +  S+G A      +    M++NA+ AMY AK  G      +  S
Sbjct: 363 EAIGQPMVLDGHEIEMRPSVGIAIHPRDGMDVEAMMRNADSAMYEAKRSGSGRFHYYDPS 422

Query: 699 SFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + +        A+  +E  L Y P + L    +  LEALI+W HP+ G +   E
Sbjct: 423 LNSRSSLQLDLNGRFRRAILGNEFVLHYQPRVTLNGFRVTSLEALIRWQHPERGLVPPGE 482

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE+  ++  +  +++    R I +W  +     + + IN++ K L D+   E ++ 
Sbjct: 483 FIEYAEQEGLVVELGNWVVREACRQIAAWIAEGLEI-VPVAINVSPKQLRDHSFVEVIRE 541

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++     P+ +++  +E  V+ + ER R  L  L  +G+ + LDD+GT  S LSYL  +
Sbjct: 542 SVAHYGIRPALLEIEITERCVVEDFERPRAALETLSALGLKIALDDYGTGFSSLSYLKQL 601

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S ++         AI+ S I +  N+  T+IA+ +     +  L   GCD 
Sbjct: 602 PIDIIKIDRSFISDIRNARHDAAIVASTIALGHNLGLTVIAEGVETREQVIYLRTAGCDE 661

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q  +   P   ++I  LL  
Sbjct: 662 VQGYYFQKPAPPDAIRPLLAA 682


>gi|218532268|ref|YP_002423084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218524571|gb|ACK85156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 817

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 151/755 (20%), Positives = 280/755 (37%), Gaps = 36/755 (4%)

Query: 219 IPTFAMAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFL-FMYLHWN 276
                  W +     + F         L      I  A +   ++  +        L   
Sbjct: 55  FVFGCSVWSLHFVAMLAFQPGAQAAYGLLPTAASIGIAVAGALIAFLIWCRADHDPLKVA 114

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
                +                 +       A +         L          + G  R
Sbjct: 115 AAGLVLAAAISGMHYAGVGAMAANSLLAFEEALVHASLGLCATLAVIALARAGDLAGLGR 174

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDII--------QPALVGGLVLIVILIGFTVIQ 388
            + +     L         M          +           L   + L+ + +    + 
Sbjct: 175 RIEVSLWLALAICGLHFTGMTALTVAPAAPVEGGGVVLGSTQLGLAVGLVSLAVLAAGLT 234

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L   +  +    +  R  L    + ++++        V        + G  +  + G 
Sbjct: 235 ALLMQQHLMRRRMDELSRMRLLGNLAHEVLF-IHREGRVVEINQAGLRLFGAPASEIIGR 293

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L      D       L     +       EF VR A      + +  R +    G 
Sbjct: 294 P--LLDLFAEADAPVL---LRRSRCHPEDLFPEEFEVRTAAGIAVPVELTCRAI-EYLGR 347

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + + + ++ +++    I   A  D LT +PNR    +RL   L+ +A +      +
Sbjct: 348 PATAVALRD-LSRRRRDEARIRHLALHDALTDLPNRTLLEERLGLALETAAEN-GTSVAL 405

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D++K +ND  G A GD +LV   +R+   L+  D LAR+ G+ F I+L    +  
Sbjct: 406 AYLDLDRFKPVNDFHGHAAGDALLVQAAKRMLAELRPTDTLARIGGDEFVIVLAHTRSLA 465

Query: 629 KIADFAIAMRKSIAMPINLLER--------EITVTASIGFASWTSSKITSSEMLKNAELA 680
           ++A+ A  +  ++  P  +  +         + + AS+G A + S   T+  + + A+ A
Sbjct: 466 QVAETAERLVAALGRPFQIEGQIGGSVEGLRVEIGASVGIALYPSDGSTAESLKRAADTA 525

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y  K  G   V  F   +      R  I+ +L  A+   EL L Y PI+     EI   
Sbjct: 526 LYRVKDEGRGAVRFFEAAMDEQLQARRRIEHELSGAIARGELALDYQPIVNGRTGEIEIF 585

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  ++F+ +AE+   I  I  ++L+       +W       P  + +
Sbjct: 586 EALIRWHHPELGCVFPADFIPLAEQTDQIGRIGAWVLDTACAAAAAWP-----HPWRVSV 640

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ K         G+ A++ +   SP R+ L  +ESV + +   +  +L  LR +G+ L
Sbjct: 641 NVSPKQFRQPGFAAGVAAVLGRHGLSPGRLVLEITESVFIHDAATALTVLTALRTLGVRL 700

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S LSYL    FD +K + S + G       + I+R+I  +  N+  T+  +
Sbjct: 701 ALDDFGTGYSSLSYLQRFQFDKIKVDRSFVRGLGQHADALTIVRAITHLGHNLGLTVTVE 760

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +  L  +GCD +Q    A P    ++ +
Sbjct: 761 GVETQEQLTVLRELGCDQMQGYLFARPAPMTNLSE 795


>gi|77456688|ref|YP_346193.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas fluorescens Pf0-1]
 gi|77380691|gb|ABA72204.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens Pf0-1]
          Length = 898

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 149/568 (26%), Positives = 273/568 (48%), Gaps = 17/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S +     +         P    I    +  +HG   + LP +
Sbjct: 336 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYTTEEVHGQRLSELPAL 395

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L        +    Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 396 -----ENLSELLFDAPSALAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID
Sbjct: 451 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDTPISLLLVDID 507

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L     LAR + N F ++L  + +       A
Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLL-DDTDLATGQQIA 566

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I+VT S+G A           +++NA LA++ AK  G + V+ 
Sbjct: 567 NQLLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 626

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++G+EAL++W+HP+ G I
Sbjct: 627 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPERGMI 686

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  ++  +  R +      A M  + + IN++ K   D +L  
Sbjct: 687 RPDQFISVAEETGLIIPIGKWIARQACR-MSKALTAAGMGNLQVAINLSPKQFSDPDLVA 745

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +     + ++L  +E +++   E + L L +L+++G++L +DDFGT  S LSY
Sbjct: 746 SIANILKEEALPANLLELELTEGLLLEATEDTHLQLDQLKRLGLTLAMDDFGTGYSSLSY 805

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K + S +      +  + I  ++I MA N++  ++A+ I     +  L R 
Sbjct: 806 LKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRH 865

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958
            CD  Q      P+    +++ LK R+P
Sbjct: 866 RCDVGQGYLFDRPIPGGELIQALK-RYP 892


>gi|288818239|ref|YP_003432587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Hydrogenobacter thermophilus TK-6]
 gi|288787639|dbj|BAI69386.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Hydrogenobacter thermophilus TK-6]
 gi|308751837|gb|ADO45320.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Hydrogenobacter thermophilus TK-6]
          Length = 867

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 118/560 (21%), Positives = 250/560 (44%), Gaps = 23/560 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI 458
           +    E   +A   S + V   D   + +   P +  I G     + G   R +   +H 
Sbjct: 324 LLKSMEMMYMATEQSFEWVMITDKSGNIMYVNPAVERISGYTKEELLGKNPRIFKSGLHS 383

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             R+ ++ + D+ +       +  F  R  D    ++   I P+ +  G+I  ++    D
Sbjct: 384 --REFYKNLWDTILSGE--SFRAVFINRRKDKSLFYLDAIISPLRDETGNITAFVSTGRD 439

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+ ++  E +      D LT +P R  FL +L   +       +    V+++D+     
Sbjct: 440 ITQVRQMEESLYRLVNYDALTDLPTRVYFLRQLEETI---KEKSHSNIAVLLMDMHNLGG 496

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN V G   GD VL +  + +  L       AR   + F  +     ++  I +   ++ 
Sbjct: 497 INAVYGYEFGDKVLRAFAQNLKILP---AFCARYGDDEFV-LFKEMKSAEDIYELLKSVF 552

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFR 696
            +    +++      +   IG + + +    + E+++NAE+A+  AK    G     +  
Sbjct: 553 NACN--LSIEGESYKLGIHIGVSFYPTDGQRAQELVRNAEIALKKAKVSVPGSYEFYNPE 610

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   V ++++L LA+E  E  + + P+ R  D ++VG E L++W+    G + + +
Sbjct: 611 EGKKVFQWVKMEQELRLALERGEFLIYFQPVYRTSDLKVVGAEELLRWNSRSLGLVQAKD 670

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E+  +I  ++ ++ ++  + I  +        + I IN++   L   +L E +  
Sbjct: 671 FVPVLEKTGLILDVSDYVFKKCIQFIKEYH-----IKVPISINLSPAQLRQKDLAEKLCH 725

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  +  SP  + +  +E +++ + E +   +  L+  G  +TLDDFG + S LSYL  +
Sbjct: 726 VVKASGISPELLNVEITEEMLIEDLEGASRKISELKTCGFLITLDDFGVRYSSLSYLANL 785

Query: 877 PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +    +    +  + +II MAK+++   +A+ +  +  ++ L  +GCDY
Sbjct: 786 PVDYIKIDMSFIKLIDQDEKTLKVVLAIINMAKSLKIKTVAEGVERKSQLEILKDLGCDY 845

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q  +++ PL     + +L 
Sbjct: 846 VQGFYLSKPLPVEEFISILS 865


>gi|226309056|ref|YP_002769016.1| hypothetical protein RER_55690 [Rhodococcus erythropolis PR4]
 gi|226188173|dbj|BAH36277.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 775

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 154/758 (20%), Positives = 317/758 (41%), Gaps = 36/758 (4%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
           R  +        +  L Y++     L+  V          R      +   L   + +++
Sbjct: 23  RRQIDEAAAVAPFANLAYMASLVVILTYTVP---PGRQTLRWLGGALIFLVLANSIRVWI 79

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
              RW        +  +  +  +  ++     + A +         L     +      G
Sbjct: 80  PL-RWRQSKHTPRYDYVGLLVEVIVVATLDVALFALLFHDMDVFRDLVLIATMAGIMGAG 138

Query: 334 ---YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
              +     +   WI I    +   + +       ++  A+   + +  + +G   +   
Sbjct: 139 TVTFSSLRSVSLTWIYIHGLGVFTVLIVHAEPHFRVL--AIQLCIYMFALTVGAVYLSAS 196

Query: 391 LATGYFSQGIFSDGERQSLAV------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                 ++   ++ ERQ++A+       GS D +W+ D       T+  +A + G+    
Sbjct: 197 FQRRCLAE-FQAESERQTVALLLDGFEGGSRDWLWECDTNGRFSHTSARLAEVAGMTVDE 255

Query: 445 MHG-PIRNWLPYI----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +        L  +        R     ++D          +        D +  W  +  
Sbjct: 256 LQQLTFGQLLTRLQIASSPEGRAAAAQMIDKL--ESSAPFRDTVVPVHVDGRRRWWSLSG 313

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P    +G IL + G+ +DITE+    + IL  A  D+LTG+PNR++F   L   ++  A
Sbjct: 314 NPRVLESGVILGWRGVGSDITERYVHEQEILRLAATDSLTGLPNRRAFGVALEEAINSRA 373

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            D  +   ++  D+D +K +ND LG  +GD +L+ +T+R+ +++   D+ +R+ G+ FG 
Sbjct: 374 PDKQVLVGIL--DLDNFKSVNDTLGHPIGDQLLLEVTKRLRKVV-GSDMCSRMGGDEFG- 429

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +++  ++            + +  P  +    I V A+IG++S       +  ++  A+L
Sbjct: 430 LIVCTSSRDDPGVIFDRYLEVLHEPFFVEGNRIEVRATIGYSSAPEDSTDADGLVMLADL 489

Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N V  F   + +  S R     +L   +E  +  L Y P +     E+V 
Sbjct: 490 ALYEAKSTGRNRVGKFSPLLRARASARATALHELDRGIEEGQFDLHYQPQVDTQTGEVVA 549

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP  G I  S+F+ +AEE  MI  +    +         W        I + 
Sbjct: 550 FEALLRWNHPSRGLIGPSQFISVAEETGMIIPLGAQAMAMATAAAAGWP-----IGIGVS 604

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   L+  E    ++  ++ +  +P  ++L  +E+ V+ +  R+   L +LR++G++
Sbjct: 605 VNVSPVQLVSREFGAMVKKALTDSGLAPHLLQLEITETGVVDD--RAIRDLYKLRELGVT 662

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917
           + LDDFGT  S  + L  +P D +K +  L+T S + ++++++SI+ +A  +    +A+ 
Sbjct: 663 VALDDFGTGYSSFATLQRLPIDVLKIDRMLVTDSDDPKMSVVKSIVELAAALGMKSLAEG 722

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      + +  +GCD +Q  H++  L    +   L  
Sbjct: 723 VETIEQFRRVQWVGCDLVQGYHISKALTAERVDVYLAA 760


>gi|315500253|ref|YP_004089056.1| diguanylate cyclase/phosphodiesterase with pas/pac and mhyt
           sensor(s) [Asticcacaulis excentricus CB 48]
 gi|315418265|gb|ADU14905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Asticcacaulis excentricus CB 48]
          Length = 929

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 158/785 (20%), Positives = 308/785 (39%), Gaps = 60/785 (7%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF-GFLSKLVNLPSGELLIWRAC 256
           V   +       ++           A A +VLG ++  F G  +  V             
Sbjct: 151 VLLGMVFEAAALWLATSRFRYALGGATALMVLGIVAHHFIGMGAVDVTPDPRIATGGLML 210

Query: 257 SEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC-----IAILFCMSFYYPMVTASIA 311
           +  ++S ++ +     +       +      + +A        ++  +  Y   +     
Sbjct: 211 NPGSMSITVAVVAIAVMGLCIMSLRQRQRFEAAVAANERHMRILIDSVRDYAIYMLDPQG 270

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPA-------WILIFIWFIGLWMAITK---- 360
           R++  +             + G   A     A         ++                 
Sbjct: 271 RVSNWNAGAQRFKGYDASEIVGQSFATFFPEADREAGRPQAILQAALAQGRYEEEGERVR 330

Query: 361 -----RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                 L + I+ P       LI        I    A     +    +      A+    
Sbjct: 331 KDGSTFLAHVILTPMYESDGTLIGFAKVTRDITQRRADREILKRTTHN---FDTALRHMS 387

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASG---------SMHGPIRNWLPYIHINDRDNFRT 466
             +  +D     V   P + ++ G              + G I              +R 
Sbjct: 388 QGLSLYDADHRLVFANPRVLSMFGNDPDMARPGTPFREVLGNILRRAGATEAQIEARYRL 447

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D       G L  E    +A+     + +  RP+         ++   +DIT +++  
Sbjct: 448 HMDLIAQPEGGTLISE----SANGTV--LSVTYRPLPEG-----GWVTTIDDITARRRDE 496

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + I   A  D LTG+PNR+ F       L+ +A   +    V  ID+D++K+INDV G A
Sbjct: 497 DRIAHMARHDGLTGLPNREHFNQHTDRELERAARTGHKVAAVA-IDLDRFKEINDVRGHA 555

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +  R+  L    + +AR+ G+ F  +  S   + +++DF   +  ++  PI+
Sbjct: 556 AGDQVLKIIAERLQRLCGDTEFVARIGGDEFACVKTS-AEARELSDFVSRLDAALHDPID 614

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN------HVESFRVSSF 700
           L   E++   S+G A +         ++ NA+LA+Y AK +              R+   
Sbjct: 615 LDGFEVSPGGSMGVAVYPDDADGREPLMNNADLALYRAKAQPRINGHEAVCYYEARMDEA 674

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             DR  + +DL  A+   EL + Y     +  + I G EAL++W HP+ G +S ++F+ +
Sbjct: 675 ARDRRALAKDLWQAIARDELRVHYQVQRSVTSQAITGYEALLRWQHPQRGFVSPADFIPV 734

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  I  ++L     +  +W +        + +N++   L   +L   +Q+++ +
Sbjct: 735 AEECGAILEIGEWVLRTACAEAATWTN-----GAKVAVNLSPVQLTHPDLVGMVQSILIE 789

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  SP R++L  +ES ++G+  R+  +L +++  G+++ +DDFGT  S L  L   PFD 
Sbjct: 790 TGLSPRRLELEITESTIIGDKARALHILRQIKGFGVTIAIDDFGTGYSSLDTLNAFPFDK 849

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +  +  + +  AI+R+I+ + +++E  ++A+ +     ++ L   GCD  Q  
Sbjct: 850 IKIDRSFLMEAEQSPQARAIIRAILALGRSLEVPVLAEGVETVAQLELLRSEGCDEAQGY 909

Query: 939 HVASP 943
           +   P
Sbjct: 910 YFGRP 914



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 95/325 (29%), Gaps = 20/325 (6%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE-IALSSSLIIFLFMYLHWNR 277
           +    +A     + +     L+    + +G  L     S  IA++ +             
Sbjct: 50  VAMAGLAAGFGIWATHFIAMLAYSAGVATGYDLFKTFLSLLIAVTLTGSGIALAITETKA 109

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           +   VG               MS              +A+ VL    F          R 
Sbjct: 110 FWRGVGGALLGVGVAGMHYTGMSAVIAPAHIGWHTELVAASVLLGMVFEAAALWLATSRF 169

Query: 338 VLLIP-AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV---------- 386
              +  A  L+ +  +         +D         GGL+L    +  TV          
Sbjct: 170 RYALGGATALMVLGIVAHHFIGMGAVDVTPDPRIATGGLMLNPGSMSITVAVVAIAVMGL 229

Query: 387 -IQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGS 444
            I  +     F   + ++     + +    D  ++  D                G  +  
Sbjct: 230 CIMSLRQRQRFEAAVAANERHMRILIDSVRDYAIYMLDPQGRVSNWNAGAQRFKGYDASE 289

Query: 445 MHGPIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           + G   ++  +    DR+  R   IL + +    GR + E      D       + + PM
Sbjct: 290 IVGQ--SFATFFPEADREAGRPQAILQAALAQ--GRYEEEGERVRKDGSTFLAHVILTPM 345

Query: 503 SNSNGDILRYIGIANDITEQKKSLE 527
             S+G ++ +  +  DIT+++   E
Sbjct: 346 YESDGTLIGFAKVTRDITQRRADRE 370


>gi|206974322|ref|ZP_03235239.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
 gi|206747562|gb|EDZ58952.1| sensory box/GGDEF family protein [Bacillus cereus H3081.97]
          Length = 689

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 245/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQILNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   +  + K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVEGVSKNILKRISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMDGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|119715376|ref|YP_922341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardioides sp. JS614]
 gi|119536037|gb|ABL80654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nocardioides sp. JS614]
          Length = 827

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 134/616 (21%), Positives = 260/616 (42%), Gaps = 17/616 (2%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + A ++     +G    +                L+   +      ++ V         +
Sbjct: 206 VLAEVVGAGGSVGTTTRLRDHRGTWHWMELTATNLLDTSVGGVVCNLRDVTDRVRAEAAL 265

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +   R       + + +W              +  ILGL +  + G     L  +  ++
Sbjct: 266 RASERRYRAIADNADEGLWVTAPDGRSAYVNQRLVEILGLEAEEILGRP--VLEVLDPHE 323

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +     +L +       R +  +R    D     +++   P+ ++ G +   + +  D+T
Sbjct: 324 QP-MTRVLAAGTDDGTQRHEVTYR--HPDGGRRSLVVSTSPLDDAGGAVEGSLAMVADVT 380

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +   A  D LTG+PNR    DRL   L             ++ID+D+++ +N
Sbjct: 381 DARRLERELRDAALHDGLTGLPNRALLRDRLEHALARETRST----AALLIDLDRFRVVN 436

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A GD +L     R+   ++  D +AR  G++F +I     +  +          +
Sbjct: 437 ESRGHAAGDTLLADTAHRLAAAVRPTDTVARFGGDQFLVICEDV-DEQEARAIGEDALGA 495

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P      ++T+TAS G A       ++  +++ AE A+  AK  GG  V+++   + 
Sbjct: 496 LRPPFPAGGGDVTLTASAGLALTP--APSAGALVRRAETALRAAKAAGGARVQAYDAEAA 553

Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  +   +L  ++   EL L Y P+I L   E+VG+EAL +W HP  G +  S F+
Sbjct: 554 AVSEQRFELGVELARSLAADELALHYQPVIGLASGEVVGVEALCRWQHPLLGQVPPSTFI 613

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQAL 817
            IAE   +   ++ +++ER  R+    R    +PP  ++ +N++++ L D  L E +   
Sbjct: 614 EIAEAEGLAATLDRWVVERALREAAELRASGALPPTAYVAVNVSARSLADPGLAEHVLRA 673

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                 +P  + L  +ES  M +P  +  LLGRLR+ G  + +DDFGT  S L+YL  +P
Sbjct: 674 AQTAGTAPQDVLLEVTESATMTDPAAAADLLGRLRRHGFRVAVDDFGTGHSSLAYLRRLP 733

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +    + E   AI  SI+ +A+ +  +++A+ +        L R+G D  
Sbjct: 734 VSVLKVDRSFVAEVATDEHARAITGSIVDLARTMGLSVVAEGVETPAHAAVLRRLGADAG 793

Query: 936 QDSHVASPLGFNSILK 951
           Q    +  +      +
Sbjct: 794 QGWLWSPAVSPEEATR 809



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 399 GIFSDGERQS-------LAVLG-SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            +    ER+        LA+   + D+    D     +  +P +  +LG A   +     
Sbjct: 132 SLLQSVERRRRQQEDFFLALAQRASDLAVVLDPDATVLFASPAMTGVLGHAIEDVLANDA 191

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             + Y+H +D +  R +L   V    G +    R+R     +HWM +    + ++   + 
Sbjct: 192 --MDYVHPDDVERARAVLAEVV-GAGGSVGTTTRLRDHRGTWHWMELTATNLLDT--SVG 246

Query: 511 RYIGIANDITEQKKSLE 527
             +    D+T++ ++  
Sbjct: 247 GVVCNLRDVTDRVRAEA 263



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     V   P  A +L    GS+ G     L   H +D+      L   +       Q
Sbjct: 35  CDENAVLVAVNPAFARMLDGPPGSLTGRPIRDLA--HRSDQGAADRALGRLLRSETDATQ 92

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-----EQKKSLEGILCNAF 534
            E  +R +D +    +     + N +      + +  D++     E+++  +     A 
Sbjct: 93  AERILRRSDGRPVPTLASATAVRNGSPRPSGALVVYQDLSLLQSVERRRRQQEDFFLAL 151


>gi|39937227|ref|NP_949503.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39651085|emb|CAE29608.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains [Rhodopseudomonas palustris CGA009]
          Length = 912

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 259/568 (45%), Gaps = 33/568 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +L V  + D  +        +          GL +G +                      
Sbjct: 362 ALTVQNTADGRYMLANRGAEIILNRRREDATGLTTGEIFNAKE-----------ARLIAE 410

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            D     + G +  E  +  A       + R   +++        I    D+T+++++  
Sbjct: 411 RDELAIRKGGLVVEEHPISTA-GGLRLFVTRRMTVTDEADQAHYLIKTHVDVTDRRQTEA 469

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT +PNR +FL  LT +++ +  +      V+ +D+D  K+INDV G A+
Sbjct: 470 RMAHMAYHDGLTDLPNRDAFLKSLTQMIE-ACDNAVDEFAVLSVDLDGLKEINDVFGHAI 528

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L+ + RRI E      ++ARLSG+ FG+I+          D A  + K++A    +
Sbjct: 529 GDKLLIEVARRI-EWASRGGVVARLSGDEFGLIIDGPQ-PAAARDLASMVAKALAPGFVI 586

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705
             + + +  + G A + ++   ++ +L NA  A++ AK   RG   V    +     DR 
Sbjct: 587 DGKTVRIGVTTGVALFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRR 646

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLM----DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++ +DL  A+ N E+ L Y P         + +IVG EAL +W HP  G +  SEF+ +A
Sbjct: 647 VLHQDLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPSEFIPLA 706

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  ++L    R   SW       P+ + +N++    L+ +L   +  ++ +T
Sbjct: 707 EESGLIVELGEWILREACRQAASWAR-----PLQVAVNLSPAQFLNTDLVAFVHEVLLQT 761

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +E V++ + +R   LL RL+ +G+ +++DDFG+  S L+YL   PFD +
Sbjct: 762 GLEPGRLELEITEGVLIEDFDRGLSLLRRLKALGVRVSMDDFGSGYSSLTYLQAFPFDKI 821

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +  AI+R++I +   +  T++A+ +  +  +  L    CD +Q   
Sbjct: 822 KIDRAFIMNLGRNPQSAAIVRAVIGLGHGLGVTLVAEGVETQDQLDFLVDESCDAVQGYL 881

Query: 940 VASPLGFNSILKL-----LKERFPLVKN 962
           +  P   +    L     L++R P    
Sbjct: 882 IGKPAPIDQYRWLVGLDALEDRAPARAR 909



 Score = 41.1 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 6/136 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIR 450
                S+ + +  +     +      V    I     +       T+ GL+   + G   
Sbjct: 210 ELRRMSKELSTTKQFLESVIDNIPVCVAAKSIEDGRYILANRAFETLSGLSRDKIIGATA 269

Query: 451 NWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                ++      + R    S +    G  Q E  V            R+    N +G+ 
Sbjct: 270 ---DQLYPARSAASIREADQSALQSITGAFQSELTVELGRGDRILASNRVVA-RNEHGEP 325

Query: 510 LRYIGIANDITEQKKS 525
              I +  DIT ++  
Sbjct: 326 EFLIALFEDITNRRAL 341


>gi|172035684|ref|YP_001802185.1| hypothetical protein cce_0768 [Cyanothece sp. ATCC 51142]
 gi|171697138|gb|ACB50119.1| hypothetical protein cce_0768 [Cyanothece sp. ATCC 51142]
          Length = 700

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 120/427 (28%), Positives = 225/427 (52%), Gaps = 5/427 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   +  + F DNLTG+ NR   L  +   +     + +    V+ +D D++K IND 
Sbjct: 243 QENNAKLQHDLFHDNLTGLANRVYILQEIEAEIKEKKANQDHCFAVLFLDCDRFKVINDS 302

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD+VL+++ +R+   ++  DI ARL G+ F I++ + ++  ++   A  + K ++
Sbjct: 303 LGHDVGDEVLINIAQRLNLCIRKHDIAARLGGDEFVILIKNLSDIKQVTQIADRILKQMS 362

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            P+ L  +++ +T SIG      +   + ++L++A++ MYHAK +G      F   + + 
Sbjct: 363 EPLILENQQLVITMSIGVVVSQENYENADDLLRDADITMYHAKQQGKAQYAIFKPIMHTQ 422

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ ++  L  A+E  E YL Y PII     +++G EAL++W HP  G IS + F+ I
Sbjct: 423 ALERLEVESSLRKALEKQEFYLYYQPIISFKTSQLIGFEALLRWHHPTQGWISPATFIPI 482

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I ++  ++L+     I  W+       P+ + +NI+S  L   +  E ++ ++ 
Sbjct: 483 AEETGLIVSLGQWVLQEACHQISIWQSHFPFSEPLKVSVNISSFQLNQMDFVEQVKKVLE 542

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++    S++ L  +E+V+M N E +   L  L+K+G+ +++DDFGT  S L+YL  +P D
Sbjct: 543 ESKIKASQLNLEITETVIMNNIESTSFKLQCLQKLGVKISIDDFGTGYSSLNYLQQLPID 602

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +           I+ +II +   +    +A+ I        +  +G DY Q 
Sbjct: 603 ILKIDRSFVRRLESNPSEFQIIEAIIKLGNILGMETLAEGIETSEQYNLIQSLGVDYAQG 662

Query: 938 SHVASPL 944
              + PL
Sbjct: 663 FIFSKPL 669


>gi|219668322|ref|YP_002458757.1| diguanylate cyclase/phosphodiesterase [Desulfitobacterium hafniense
           DCB-2]
 gi|219538582|gb|ACL20321.1| diguanylate cyclase/phosphodiesterase [Desulfitobacterium hafniense
           DCB-2]
          Length = 975

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 139/556 (25%), Positives = 269/556 (48%), Gaps = 13/556 (2%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ++   A+  +  +VW+ ++    +  + +    L           +    Y++       
Sbjct: 426 QKYEHAINSTNSVVWELNLSNRSIYFSRNFENWLSRPFPWHEPVDQLMDKYLNEKIVQLL 485

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              + +++   +  ++ EF V+++     W+  + + +  S+ + +   GI  D+T+QK 
Sbjct: 486 NEEIAAYLNGEKSEIKVEFPVKSSAKPSRWIKAQGKAIRGSSEEEIFLYGIMTDVTDQKL 545

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E I   A  D LT +PNR SF+++L   ++ +     L   ++++DID +K+IND LG
Sbjct: 546 QEEYIDHLAHYDYLTNLPNRISFMEKLQEEIEKA-----LPLYILLMDIDNFKEINDTLG 600

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD VL ++ +++ +       ++R  G+ F +IL+++ +S  I +    +R   + P
Sbjct: 601 HVWGDKVLKAVAQKLLDHACPNMFISRFGGDEF-LILMTDRDSCDIEECIKQIRIMFSQP 659

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702
           I++   E T+  S+G   +        +++ NA+ A+Y  K  G NH   +     +   
Sbjct: 660 ISIERNEFTLKFSMGITRYPEDSTDIDQLIMNADTALYQVKRSGKNHHLLYNKEMQQELR 719

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++ + +  +  AV+    YLVY P + +   EI   EAL++  H     IS   F+ IAE
Sbjct: 720 NKAVTEGIIRKAVQEDGFYLVYQPQVNVKTGEIESFEALVRLKHH---PISPDVFIRIAE 776

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I   + +   R   +WRD+   P   I IN +SK + D +  + +   +++  
Sbjct: 777 ESDLIYQIGRVVTKEAIRQAAAWRDK-GYPRKSISINFSSKQIRDRDYLQFLVDTLAEYE 835

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  +++  +ES+++     +  LL +++++GI + LDDFGT  S L+YL YIP D VK
Sbjct: 836 MDPQCLEIEITESILLEETHLTLELLEKIKELGIKIALDDFGTGFSSLNYLTYIPVDKVK 895

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL     +   I ++ SII +A ++   I A+ I  +   ++L   GC+ IQ    +
Sbjct: 896 LDKSLCDKFLSPDNIKVIESIISLAHSLNLVITAEGIEEQWQYEQLKLSGCNSIQGYLFS 955

Query: 942 SPLGFNSILKLLKERF 957
            PL      K+ ++ F
Sbjct: 956 KPLVAEEAEKIYEKNF 971


>gi|220936132|ref|YP_002515031.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997442|gb|ACL74044.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 761

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 129/447 (28%), Positives = 230/447 (51%), Gaps = 6/447 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +A ++ E++++ E +   A+ D+LT +PNR  F DRL   ++ +   + L   ++ ID+
Sbjct: 311 ALAQEVREREQAQERLNELAYSDSLTHLPNRTLFQDRLHQAMEYAKRHERL-IALLFIDL 369

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K++ND LG A GD +L  + RR G +L+  D LARL G+ F +IL           F
Sbjct: 370 DDFKRVNDSLGHAAGDRLLQEIARRFGRVLRETDTLARLGGDEFTVILTDIQRPEDAVTF 429

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +  ++  P  L E+ IT++ASIG   + S     +++LK+A+ AMY AK RG N  +
Sbjct: 430 VRKLLDTLRAPFMLGEQSITMSASIGITLYPSDDTAEADLLKDADTAMYQAKSRGKNTFD 489

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +          R+ ++ DL  A++ ++  L Y PI+ L    + GLEAL++W HP  G 
Sbjct: 490 FYAPELTQSVRARLTMEGDLRAALDTNQFLLHYQPIVSLNGAGVQGLEALVRWQHPVRGL 549

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   EF+ +AE+  +I  I  ++++     +  W D   +  + + IN++      + L 
Sbjct: 550 VPPDEFIPVAEDSGLIHEIGDWVIDAACAQLAQW-DARGLSHLTLAINLSPVQFRRDGLV 608

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   + +   +  R+ L  +ES++M         L  L  +GI L +DDFGT  S L+
Sbjct: 609 SRIARRLRQHSIASERLHLEITESLLMEQNRHVAETLQTLDAMGIGLCIDDFGTGYSALN 668

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL + P   +K + S +      E   A++R+I+ MA  +   ++A+ +  +  ++ L  
Sbjct: 669 YLRHFPIRQLKVDRSFVEDMLHAEDTRALVRAIVLMAHALRLEVVAEGVEEKSQLELLRE 728

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           MGCD +Q   ++ PL    I   ++ +
Sbjct: 729 MGCDQVQGYLLSRPLPAAEIPGWIESQ 755


>gi|332139599|ref|YP_004425337.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549621|gb|AEA96339.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 945

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 167/962 (17%), Positives = 329/962 (34%), Gaps = 54/962 (5%)

Query: 17  ILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIE 76
            L++  +      FA  P+ I+ S     +    +           F       ++    
Sbjct: 12  ALLISWVMFSFHVFASSPLVINESFERDIINHFAQRLEAPSST-TYFDILSGSAVAPSPG 70

Query: 77  VSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI---ISVTPS 133
            +     ++  W   +L +T  S +  ++ +    +     +  D   R I         
Sbjct: 71  PN----TNKRVWYSTSLQHTGYSPIPLVLNIDRLNIDDLQIYLLDDSQRIIKSYRYQAGK 126

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDTVNSFTLY 191
             +SL +   +    F  T+ P      ++ +    L    I LWE +       +    
Sbjct: 127 GDYSLRQPLPNIRLAF--TLQPYQDARLLIAVKDDGLKYFPIALWERDRLHQHDTNMLTL 184

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
            G + GV SL+A +    Y+  R   +   F +    L  I++ F        +  G L 
Sbjct: 185 LGAVAGVMSLIAFYFLFSYLYQR---IPSRFWLTMTTLVIIALLF--------ITEGGLA 233

Query: 252 IWRACSEIALSSSLIIFLFMYL----HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
           +W   +  + +   + F  + L      +    +V ++  +      I   +        
Sbjct: 234 VWPNLTNASENFFAVCFGMLLLCVGKVTHHLFPRVPFLLRAINYAAPIAATIYCLTVDAY 293

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVL---LIPAWILIFIWFIGLWMAITKRLDN 364
            +   + L   V+   +  +    K     V+      AW+  F ++  + + +   L  
Sbjct: 294 TTTISLLLLIAVMGLYHVALALLFKDKVSRVVSTTYALAWLSFFAFYALVTLNLFSDLIY 353

Query: 365 DI---IQPALVGGLVLIVILIGFTVIQHV--LATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            +   +   L   L  + +       +               S+          S +  +
Sbjct: 354 TVDVAMGMLLFITLGFLCLGFSVITKEQAKNQDQLSTQAETISNLNHFYDLFRNSAEGHY 413

Query: 420 DWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
                    +  P    + G  +    +       + Y    DR     +L   V  +  
Sbjct: 414 TSTWDGKLKSVNPATCKVFGYENEEEMLADAASTKVFYASPEDR----QVLLGEVSQQGH 469

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E R +  D    W  +  +   + +G+ L   G   DITE+K+S   +   A  D+
Sbjct: 470 VTGKEIRGKRKDGSEFWFSLSCQMRESDDGNFLY--GSIIDITEKKQSDLSLQYLATHDS 527

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+ NR+ F       L       ++   ++ +D+D++K +ND  G   GD ++  + R
Sbjct: 528 LTGVYNRRQFETDFREKLS---QKSDIPVCILFMDLDRFKVVNDTCGHKAGDVLIKDIAR 584

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I   L    +LARL G+ FG+I    + +    +    +    A       R   +  S
Sbjct: 585 LIENTLHDEALLARLGGDEFGVIYTDVDANEVYLNAVKILNAVQAYRFMWDNRIFNLGVS 644

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCL 713
           IG      +++ + + L  A+ A Y AK +G N V  +        R   + D    +  
Sbjct: 645 IGMVVCEDTEVNAGQYLSMADAACYFAKEQGRNQVHRYNKDDESMQRYQRELDWVSSINN 704

Query: 714 AVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A+E     L Y  +       +    E L++        +  + F+  AE   M   ++ 
Sbjct: 705 ALEEGRFELYYQSLRPLNQTTDGHYYEVLLRLREKNGNLVEPANFLPTAERFEMNVNVDK 764

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++    + +    +          IN+    L D +    +           +++    
Sbjct: 765 WVVTNTFKWLSENPEHLAELK-RCSINLNCHSLADRDFTLFILNAFETFNIPYNKVCFEV 823

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
            ESV +   E +   +    ++G S  LDDFG+  S  SYL  +P + VK +G  +    
Sbjct: 824 IESVAIIKMEDTLSFMRTFNRLGCSFALDDFGSGFSSYSYLKSLPVNQVKIDGMFIKDML 883

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 A++ SI  +AK +    + + +  E  + +L +MG D+ Q   VA P       
Sbjct: 884 NDSVDTAMVASINDVAKAMGMQTVGEFVENEGTLAQLGKMGVDFAQGYGVAKPAPLRDFK 943

Query: 951 KL 952
            L
Sbjct: 944 PL 945


>gi|157372974|ref|YP_001480963.1| RNase II stability modulator [Serratia proteamaculans 568]
 gi|157324738|gb|ABV43835.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Serratia proteamaculans 568]
          Length = 664

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/624 (21%), Positives = 270/624 (43%), Gaps = 18/624 (2%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
            +      + + + +     +  +    V  L        F+  Q V        G+   
Sbjct: 55  RLSGITASLDITITLGGEPIHLHLVGRRVNNLEWAGTASAFSDTQSV--ARDLVHGLSFA 112

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +     V  +  ++   D                GL    + G    +  ++   +   
Sbjct: 113 EQ----VVSEANSVIVIVDQHGRIQRFNRLSEEYTGLHEHDVIGKN-VFQLFMSPEEASA 167

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R  +  F        + E  ++    +  ++       S S  + +  I    DITE++
Sbjct: 168 SRRNIAGFFRN-GSSYEVERWIKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEER 226

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E +   A  D +TG+PNR +  D++T  +    T D     ++ +D+D +KK+ND  
Sbjct: 227 RAQERLRVLANTDIITGLPNRNAIQDKITQSIA---TRDGHSVGLVYLDLDNFKKVNDAY 283

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV ++  +   L     LARL G+ F ++L  + +   +   A  +   +  
Sbjct: 284 GHMFGDRLLVEVSLAVLGCLDNDQTLARLGGDEF-LVLAQQADREMLQRLAQRIIDRLKT 342

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
           P  +   E+    SIG A           ++++A+ AMY AK  G      F   ++   
Sbjct: 343 PFRIGLIEVYTGCSIGIALCPEHGNDLDSLIRSADTAMYVAKEHGKRTYTVFSPEMNKRV 402

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++ + +  +L   +E ++L + Y P I  +   +  +EAL++WD P+ G I   +F+  A
Sbjct: 403 AEYMWLDTNLRKGLEQNQLVVYYQPKIEALSGRVCSVEALVRWDSPERGLIPPLQFISYA 462

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  ++L+  A+    W+ Q     + + +N++++ L+D+ + E +  ++   
Sbjct: 463 EESGLIGPLGRWVLQTAAKQAAQWQRQGLQ--LRVAVNLSARQLVDDSIVEDLAQVLQHN 520

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  +    +ES ++ + +R+R ++ RLR++G  + LDDFGT  S L+ L  IP D +
Sbjct: 521 QLTPCLLDFELTESSLIEDEKRAREVITRLRELGAQVHLDDFGTGYSSLAQLARIPLDAI 580

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G  +     +++R+I+  A+ ++  +IA+ +  E + + L  +G D  Q   
Sbjct: 581 KLDKSFVRGVNDNPVSQSLVRAIVAAAEALKFRVIAEGVETESENRFLDEIGVDEKQGFL 640

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
            A P+    +   L+   P   + 
Sbjct: 641 FARPMLPEQLEHWLQSYRPPSSSA 664


>gi|220933358|ref|YP_002512257.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994668|gb|ACL71270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 808

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 112/563 (19%), Positives = 217/563 (38%), Gaps = 14/563 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +  + +R    +    D V   D+        P    + G       G     +  
Sbjct: 241 AEQALSGERDRLFTTLESIADGVITADVAGRVAYMNPVAEQLTGFTLNQARGRPMEEILR 300

Query: 456 IHINDRD---NFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +   D +        ++             E R+R  D + + + +   P+ +    I  
Sbjct: 301 V--EDLESGELLPDPVERCFNGGSPVVFSEESRLRRPDGESYAVRLTASPLRDGEDGISG 358

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + + +D +        +   A  D LTG+ NR+ F DR+   L+ +         +  I
Sbjct: 359 AVLVLHDFSMLWDMARQLSHQARHDALTGLINRREFEDRVREALESARRSSRSH-ALCYI 417

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G   GD++L  L   +   ++  D LARL G+ FG++L +      ++
Sbjct: 418 DLDQFKVVNDTCGHVAGDELLRQLAAALPRHIRDTDTLARLGGDEFGLLLENCPLDRALS 477

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + +   +      R   V  SIG  +   +  + SE+L  A+ A Y AK +G N 
Sbjct: 478 ICHQLLAEVAELRFMWQGRRFDVGMSIGLVAIDGASASLSEVLSEADSACYVAKEQGRNR 537

Query: 692 VESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V   R        R   +     +  A+E     L   PI  +  E +   E L++    
Sbjct: 538 VYVSRPGDQALKTRFGEMEWLGRIREAMEEERFELYCQPIRPISGEGVPHFEILLRLKAE 597

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               +    F+  AE   ++  ++  ++  +   +           I + IN++ + L  
Sbjct: 598 DGSLVEPGAFIPAAERYNLMPQVDRHVIRSVFAMLADSDFALKQHAI-VGINLSGQSLGQ 656

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L + +   +        R     +E+  + N   +   +  LR +G +  LDDFG+  
Sbjct: 657 EDLLDFVTEALHYYGLPAHRFCFEITETAAIANLSSAAGFIRELRDMGCAFALDDFGSGL 716

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S  +YL ++P D +K +GS +    +     A++ +I  + + +    IA+ +  E  ++
Sbjct: 717 SSFNYLKHMPVDYLKIDGSFVQDVLTDPVDAAMVGAIHRIGRVLGVKTIAEFVESEAVLE 776

Query: 926 ELTRMGCDYIQDSHVASPLGFNS 948
            L  +G DY Q   +  P  F  
Sbjct: 777 HLREIGVDYAQGYGIGRPKPFRD 799



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 21/137 (15%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND----- 460
           R  L    + D +   D     V         LG +   + G        +H+ D     
Sbjct: 9   RFRLIFEQALDPMVLIDRHGGIVEANRSACASLGYSHEELVG-------GLHVTDFDLNA 61

Query: 461 -RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            R++   +  +   +     Q  +R    D       + I  +    G+  +      DI
Sbjct: 62  TREDVGRVHGNPERHLPASFQSTYR--RKDGSTFPAEVHINAVR--VGEQAQVFATFLDI 117

Query: 520 TEQ----KKSLEGILCN 532
           +E+    +   E     
Sbjct: 118 SERLAAERTLREREHQL 134



 Score = 43.0 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 11/144 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       + +     +   A+  +  +++  D   + + +       LGL  G
Sbjct: 111 FATFLDISERLAAERTLREREHQLRTAITSAPMVLFSLDRHGNFMLSEGKGLEGLGLVPG 170

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G     +   +    +  R  L          +Q E RV          +   +P+ 
Sbjct: 171 QAVGMNALEMYGAYPEVAEGLRRAL------SGEPVQLESRVEG-----RCFLHHWQPVP 219

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +        +G++ DIT Q  + +
Sbjct: 220 DEAAGGWGVLGVSYDITAQCLAEQ 243


>gi|302878852|ref|YP_003847416.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
 gi|302581641|gb|ADL55652.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gallionella capsiferriformans ES-2]
          Length = 832

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/566 (24%), Positives = 256/566 (45%), Gaps = 22/566 (3%)

Query: 404 GERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459
             R  LA      +G+ +   D+    +   P    I G +   + G   R +   +H  
Sbjct: 269 EARLELASRVFETTGEAIVVTDVSGAIIAVNPAFCRITGYSEAEVVGKNPRMYKSGLHKQ 328

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               +R      + +  G+   E   R  + + +     +  + +S G+   Y+ + +D+
Sbjct: 329 --AFYRDFWSELIKH--GQWCGEIWNRRKNGELYAQWESVTTIKDSKGNTSSYVAVFSDM 384

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E KK+   +   +++D LTG+ NR  FL ++   L  S  DD     V++ID+D++K+I
Sbjct: 385 SEIKKAQAEVEELSWRDPLTGLANRALFLRQVEQALVSSKRDD-YFAAVLLIDLDRFKEI 443

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFA 634
           N+  G+A+GD +L S+  R+G+ L   D+LARL  + F ++L   +        +    A
Sbjct: 444 NEARGLAIGDALLRSVADRLGQTLHRDDLLARLDSDEFAVLLPRLHIPREKAGREALAVA 503

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +R ++   I +    I V ASIG A    + + T+ ++L+ A++AM +AK  G +   
Sbjct: 504 EKLRAALRCAIEMDGEFIHVDASIGIAMLPDTPQETAIDVLRQADMAMTNAKAEGRSRTM 563

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F   +      R  ++ +L LA+   +L L   P +       VG EAL++W HP  G 
Sbjct: 564 FFESLMGETVRARFQLEAELRLAILEDQLRLYLQPQVN-SSGVQVGAEALVRWQHPTRGL 622

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
                F+ +AE   +I +I+ +ML  + R +     +     I + +NI+ +     +  
Sbjct: 623 TLPGLFIPLAESSDLIISIDRWMLSAVCRLLAELDAEG--SSIRLSVNISPRHFQQADFV 680

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +Q  +  +   PSR+ L  +E +V+G+       +  L  +GI  ++DDFGT  S L+
Sbjct: 681 SEIQHQLEASGADPSRLVLELTEGIVIGDIGDVIAKMTLLSTLGIHFSIDDFGTGYSSLA 740

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           Y+  +P   +K + S +    S     A++ +I+ +AK++   ++A+ +      + L  
Sbjct: 741 YIKRLPIHELKIDKSFIQDCTSDPNDAALVETILSIAKHLHFQVVAEGVETLGQSEFLNA 800

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            G    Q      P         L +
Sbjct: 801 RGQIIHQGYLYGRPEPAAVWRARLSQ 826



 Score = 61.9 bits (149), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 6/151 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW--DIVRDRVT--TTPDIATILG 439
              I++ +     S  +    +           +++ +  D+         +  +  + G
Sbjct: 125 VRSIRYAIERKLLSVNLQKSHDLLHKLSDHVPGLIFQFRLDVDGHMSFPFASRAMLELYG 184

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           + + ++         + H +D       +            +E+R+   +    W     
Sbjct: 185 VEADAVRDDATAVFAFQHPDDTAGIAASIQESARTLT-PWHHEYRILLPEQGVCWRRGDA 243

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           RP    +G IL + G   DITE KK    + 
Sbjct: 244 RPEKQVDGSIL-WHGFITDITENKKIEARLE 273


>gi|188591943|ref|YP_001796541.1| diguanylate cyclase [Cupriavidus taiwanensis LMG 19424]
 gi|170938317|emb|CAP63302.1| putative diguanylate cyclase (GGDEAF) and c-di-GMP phosphodiesterase
            (EAL domain) with Chase and PAS domains [Cupriavidus
            taiwanensis LMG 19424]
          Length = 1064

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 131/568 (23%), Positives = 250/568 (44%), Gaps = 21/568 (3%)

Query: 411  VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTI- 467
            +  +   V  +D              +L  +S  + G +     ++     D     +  
Sbjct: 484  LDHAAFCVITFDEDGLITGINAAGQRMLWYSSTELVGHMPVTGLHVAAELADHARALSAE 543

Query: 468  --------LDSFVGYRRGRL--QYEFRVRAADNQFHWMI--IRIRPMSNSNGDILRYIGI 515
                    L + +   R  L  + E+           +   +   P+         Y  I
Sbjct: 544  LGAPVAPGLPALLAKPRLGLTDEREWTWVRKGGSRMPVRLAVSALPVPAQATVAAGYQAI 603

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              D+TE+ +  E I   A  D LTG+PNR    +R   +L  +      R  ++++D+D 
Sbjct: 604  GYDLTERLRVDEYIRHLALHDPLTGLPNRAELGERAQALLLQA-RTRGERVALLLLDLDH 662

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K+IND LG  VGDDVL ++  RI   ++  D++AR+ G+ FG++L    +  +    A 
Sbjct: 663  FKRINDSLGHPVGDDVLRTMADRIKGTVRQGDLVARMGGDEFGVVLGGLRHDSEAELIAA 722

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             ++  +   +    + + VT S+G A +     T +E+LK+A+ A+Y AK  G   +  F
Sbjct: 723  KIQARVNEELVAGGQRLRVTPSVGMAVFPDDGDTLTELLKSADSAVYAAKQGGRARLCRF 782

Query: 696  RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +   +      I+  L  A+  +E  L Y PI+      I  +EALI W+  + G I 
Sbjct: 783  ASAMAEASLARFTIEGLLGRALAGNEFRLRYQPIVDTATLTIPAVEALITWETAERGVIQ 842

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +EF+ IAE+  ++  +  + L    R+I + R++     + + +NI+   L   +  + 
Sbjct: 843  PAEFIPIAEQSGLVVPLGEWTLSTACREIQALREELGRE-LEVAVNISPLQLRQADFPDT 901

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +   + +    P  + +  +E +++   E +     RLR++G+ L++DDFGT  S L+YL
Sbjct: 902  VARCLRQAGLPPQGLVIEVTEGILVDGGETTIETFRRLRELGVGLSIDDFGTGYSGLNYL 961

Query: 874  GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              +P   +K + S + G        A+  +II +   +   +IA+ +  E     L   G
Sbjct: 962  TRLPISRLKIDKSFVDGVDTPGHDQAVAAAIIALGHQLHLKVIAEGVETEAQFAFLRAQG 1021

Query: 932  CDYIQDSHVASPLGFNSILKLLKERFPL 959
            CD +Q    +  +   ++  +L++  P+
Sbjct: 1022 CDGLQGFLFSQGVPQQALRDVLRKPLPV 1049



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 16/131 (12%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---- 453
                D       +  S D     D     V  +     + G  +  + G   + L    
Sbjct: 350 HAWEDDSAMLQACLAQSADGFVVTDAHGVVVRASERAGQLFGTNATRLAGRSLDALIPGA 409

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +   D                  ++ E     AD     + +    +  + G    ++
Sbjct: 410 TGVVPADAAAGSA------------IRRELAGLRADGDRFALRVSAARLPAAEGAASHWL 457

Query: 514 GIANDITEQKK 524
               D+  +++
Sbjct: 458 WTVTDLAPERR 468


>gi|89893947|ref|YP_517434.1| hypothetical protein DSY1201 [Desulfitobacterium hafniense Y51]
 gi|89333395|dbj|BAE82990.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 977

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 139/556 (25%), Positives = 269/556 (48%), Gaps = 13/556 (2%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ++   A+  +  +VW+ ++    +  + +    L           +    Y++       
Sbjct: 428 QKYEHAINSTNSVVWELNLSNRSIYFSRNFENWLSRPFPWHEPVDQLMDKYLNEKIVQLL 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              + +++   +  ++ EF V+++     W+  + + +  S+ + +   GI  D+T+QK 
Sbjct: 488 NEEIAAYLNGEKSEIKVEFPVKSSAKPSRWIKAQGKAIRGSSEEEIFLYGIMTDVTDQKL 547

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E I   A  D LT +PNR SF+++L   ++ +     L   ++++DID +K+IND LG
Sbjct: 548 QEEYIDHLAHYDYLTNLPNRISFMEKLQEEIEKA-----LPLYILLMDIDNFKEINDTLG 602

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD VL ++ +++ +       ++R  G+ F +IL+++ +S  I +    +R   + P
Sbjct: 603 HVWGDKVLKAVAQKLLDHACPNMFISRFGGDEF-LILMTDRDSCDIEECIKQIRIMFSQP 661

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702
           I++   E T+  S+G   +        +++ NA+ A+Y  K  G NH   +     +   
Sbjct: 662 ISIERNEFTLKFSMGITRYPEDSTDIDQLIMNADTALYQVKRSGKNHHLLYNKEMQQELR 721

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++ + +  +  AV+    YLVY P + +   EI   EAL++  H     IS   F+ IAE
Sbjct: 722 NKAVTEGIIRKAVQEDGFYLVYQPQVNVKTGEIESFEALVRLKHH---PISPDVFIRIAE 778

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I   + +   R   +WRD+   P   I IN +SK + D +  + +   +++  
Sbjct: 779 ESDLIYQIGRVVTKEAIRQAAAWRDK-GYPRKSISINFSSKQIRDRDYLQFLVDTLAEYE 837

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  +++  +ES+++     +  LL +++++GI + LDDFGT  S L+YL YIP D VK
Sbjct: 838 MDPQCLEIEITESILLEETHLTLELLEKIKELGIKIALDDFGTGFSSLNYLTYIPVDKVK 897

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL     +   I ++ SII +A ++   I A+ I  +   ++L   GC+ IQ    +
Sbjct: 898 LDKSLCDKFLSPDNIKVIESIISLAHSLNLVITAEGIEEQWQYEQLKLSGCNSIQGYLFS 957

Query: 942 SPLGFNSILKLLKERF 957
            PL      K+ ++ F
Sbjct: 958 KPLVAEEAEKIYEKNF 973


>gi|330808461|ref|YP_004352923.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376569|gb|AEA67919.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 582

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 134/563 (23%), Positives = 257/563 (45%), Gaps = 17/563 (3%)

Query: 407 QSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
              AV  +   ++ + D+            ++ G     + G     L    H +  + F
Sbjct: 5   YRRAVDAA--AIFSETDLSGRITYVNDQFCSLFGYRRDELLGGNHRLLNSGQHPD--EFF 60

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQK 523
             +  +    +    + E   RA D   HW+   + P+ + + G I RY+ I  D++E++
Sbjct: 61  GDMWRTIALGQ--VWKGEICNRAKDGTLHWVDTTLVPVIDDDTGQIERYLAIRFDVSEKR 118

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +      D LTG+PNR    D L   L+ S   +NL   V ++D+D +K +ND  
Sbjct: 119 RLLHSLQWRVGHDVLTGLPNRTYLSDLLDQALEFS-RAENLPLAVCMLDLDGFKAVNDGY 177

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +LV + RR+  +++  D++ARL G+ F ++L       ++      +  +++M
Sbjct: 178 GHASGDRLLVEVARRLRSIVRGEDVVARLGGDEFVLVLRHVRGMDELHAALSRVLIAVSM 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +  ++I V ASIG   +      +  +L++A+ AMY AK  G N    F VS  +  
Sbjct: 238 PYGIDGKDIKVFASIGVTLFPWDNDDAETLLRHADQAMYVAKQSGRNRFHLFDVSRDKEV 297

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R      E +  A+  +EL L + P + +    +VG+EAL++W HP+ G +   EF+ + 
Sbjct: 298 RATYQTVERVRQALAGNELRLHFQPKVNMRHGTVVGMEALLRWKHPQRGLVPPREFLPLV 357

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E++   +  W+      P  + INI+++     +  E ++ ++ + 
Sbjct: 358 EETDLIVEIGEWVMEQVLTQLQQWQQAGQGWP--VSINISARHFQRADFVERLRQVLERH 415

Query: 822 L-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L   ESV + N       L     +G+  +L  FGT    L+ L ++   T
Sbjct: 416 PAVPPRLLDLQIVESVALENLAHVSACLQACHALGVGFSLGGFGTGYCSLNDLKHLRTQT 475

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +         +A+  ++I +A+     ++A+ +      + L  +GC+  Q  
Sbjct: 476 IKIDKTFVRDILHDRDDLALTEAVIGLARAFGREVVAEGLDSLEHGQLLLNLGCEVAQGY 535

Query: 939 HVASPLGFNSILKLLKERFPLVK 961
            +A P+    I   ++   P  +
Sbjct: 536 FIARPMPPERIPGWVQGFIPPSQ 558


>gi|88704892|ref|ZP_01102604.1| sensory box/GGDEF domain/EAL domain protein [Congregibacter
           litoralis KT71]
 gi|88700587|gb|EAQ97694.1| sensory box/GGDEF domain/EAL domain protein [Congregibacter
           litoralis KT71]
          Length = 834

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 135/558 (24%), Positives = 257/558 (46%), Gaps = 14/558 (2%)

Query: 404 GERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             R ++A      + + +   D     +        I G +     G   ++L     + 
Sbjct: 265 ERRLTMAAQVFTHAREGILITDDAGKIIEVNEAFEDITGFSRDEAMGKNPSFLSS-GQHS 323

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            + +  + D     +      EF  R  D      +I I  + ++N  + +Y+G+  DIT
Sbjct: 324 AEFYAAMWDELK--KNDYWSGEFFNRRKDGSLFVELITISAIRDANEAVQQYVGLFTDIT 381

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             K+  + +   A  D+LT +PNR    DRL+  L  S    + +  +  ID+DK+K IN
Sbjct: 382 RMKEHQKQLEHAAKFDSLTDLPNRILLGDRLSMALSQSQRRGS-KVAIAYIDLDKFKAIN 440

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD  LV L+R++   L+  D LAR+ G+ F  ++    +  + A     + ++
Sbjct: 441 DRLGHAAGDLFLVQLSRQMKTALRETDTLARIGGDEFVALIGDVADKTECAVLLRRLSEA 500

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P+ +    ++V+ASIG   +      + ++L++A+ AMY AK    + +E F VS  
Sbjct: 501 IKTPVTINGEALSVSASIGVTLYPEDSCDADQLLRHADQAMYAAKQNSSHDLEFFDVSEG 560

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  +   +  ++  A+   E  L Y P + L   E++G EALI+W+HP+ G +  +EF+
Sbjct: 561 YNLDLRRALLSEVRQALLRQEFRLFYQPKVHLPSGELLGAEALIRWEHPERGLLKPAEFL 620

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E   +   I  +++      +  W +     P  + +N+ +  L   +  E +   +
Sbjct: 621 PDVETSPLSVEIGDWVIAEALSQMNEWLETGLRVP--VSVNVGAMQLQAPDFTEKLTLAL 678

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++     PS ++L   E+  + + E +  ++   R++G+ + LDDFGT  S L YL ++P
Sbjct: 679 ARHEALDPSCLELEILETRALADLEATSRIMKACRRLGVRMALDDFGTGYSSLRYLKFLP 738

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + S + G         I+ +II + +  +  +IA+ +      +EL R+GC   
Sbjct: 739 AEVLKIDQSFVKGMLSDRDDKTIVMAIIGLGETFDREVIAEGVETAEHARELLRLGCGRA 798

Query: 936 QDSHVASPLGFNSILKLL 953
           Q   +A P+  +     +
Sbjct: 799 QGYAIAHPIPASDFAAWV 816



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 78/277 (28%), Gaps = 16/277 (5%)

Query: 259 IALSSSLIIFLFMYLH-WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLAS 317
              S+   + + ++L   + +   +     S  A   +L  ++                 
Sbjct: 10  ALTSALYWVLVILWLAILSLYVNHLLRAQRSDKAVSVLLVILALDAFRSLIESTYFGFFF 69

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
             LY       H        +++IP  + + +  + L + I   +  ++ Q A       
Sbjct: 70  NSLYGFLPAGIHDQLSQ-PHLVIIPKLLNVAVALVILALLIRYWIPRELKQRAQQ----- 123

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
               +        +      Q        +   +    D +   D           +  +
Sbjct: 124 -TADLESARQDADIKRRRAEQESLK----RQSILNAISDGIVISDNEGRIAAVNDGMQRV 178

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMI 496
            G     + G     L +    +      +LD          + YE   R  D       
Sbjct: 179 FGYDIEFLRGK-ETLLLHNSEEEFPPITPLLDG--EGPTAPKRAYEACYRRGDGSLFTGE 235

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                + + +G++  ++ +  DI+++K +   +   A
Sbjct: 236 TIRSLVRDPDGNVTGFVTVIRDISQRKLNERRLTMAA 272


>gi|293609673|ref|ZP_06691975.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828125|gb|EFF86488.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 950

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/575 (22%), Positives = 262/575 (45%), Gaps = 11/575 (1%)

Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           Q  L     ++ I  +    E   L    +  + + ++  D   + +   P    + G +
Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDVNPYYEKLTGFS 432

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       +       +  F T +   +    G    +F  + +  +  ++ + I  
Sbjct: 433 KSELLNKELFSITINQKELQQQFHTSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +    I  YIG A D+TEQK+  + +      D+LT +PNR  + ++L   L   + +
Sbjct: 492 VKDEFNQITNYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ++ID+++  N+ L    GD++L    +R+  +     ++A L+ + F II 
Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNSDDFAIIY 610

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   +  +   + +++  P  +   E  +TASIG A +         +  +AE A+
Sbjct: 611 EISPIHPNVEQYCQNILQALNAPFYIDNHEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670

Query: 682 YHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  GGN +  +    +       ++++L  A++N E  + Y P I + D+ I+G EA
Sbjct: 671 SEAKRLGGNTICYYCNKTNHSYKTADLEQELRKAIQNDEFVIYYQPKININDQSIIGFEA 730

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G I  + F+  AE   +I  I   +L+++ + +  W++      I + +NI
Sbjct: 731 LIRWQHPEKGLILPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKNA-GYINIQVSVNI 789

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++ +    L   +  ++ K     S ++L  +ES ++ N    + LL  +++  IS+ L
Sbjct: 790 VAQQIHRGLLLNDLDEVLQKYNIQGSDLELEITESALLDNTANVKTLLHAIKQRDISIAL 849

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DDFGT  S L+YL   P D +K + + ++     K+ AI+ ++I M K++   ++A+ + 
Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +  L +  CD++Q    + P+    I+  L+
Sbjct: 910 TKEQVTYLQKQQCDFLQGYFFSRPIPAEQIIPYLQ 944


>gi|258624694|ref|ZP_05719628.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603]
 gi|258582981|gb|EEW07796.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM603]
          Length = 684

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 137/583 (23%), Positives = 260/583 (44%), Gaps = 36/583 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSM 445
            Q         + +     + +L      D +    +  D  ++  P  A +LG      
Sbjct: 116 AQDTSEKQILVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDT 171

Query: 446 HGPIRNWLPYIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMII 497
              +   L  + I+++    F + L S +  R        R  +E +V+           
Sbjct: 172 QKLLGENLSRLFIDEKTKTVFSSQLASLLTERPLICLTGPRCGFERKVQLHAGS------ 225

Query: 498 RIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               +  S   ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   + 
Sbjct: 226 --TSILGSQSQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI- 278

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                +     ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ 
Sbjct: 279 ----QNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDE 334

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG+IL    ++      A  +   I  P +L      +  SIG   +      +  +L+N
Sbjct: 335 FGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGTDARVLLQN 394

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  
Sbjct: 395 ADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFS 454

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I G EAL++W HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P 
Sbjct: 455 INGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPG 513

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + INI+ +   + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+
Sbjct: 514 RVAINISPEQFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKL 573

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G +L++DDFGT  S L+YL   P D +K + + ++      K++ ++ +II + +++  T
Sbjct: 574 GFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLT 633

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++A+ +  +     L+ + C  IQ  H   P   + + +L  +
Sbjct: 634 VVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|229177076|ref|ZP_04304467.1| Sensory box/GGDEF [Bacillus cereus 172560W]
 gi|228606398|gb|EEK63828.1| Sensory box/GGDEF [Bacillus cereus 172560W]
          Length = 689

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEIAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYDV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 THLLAIEVTEGALI-HKDISKRVLLQLKEKNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|186685421|ref|YP_001868617.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nostoc punctiforme PCC 73102]
 gi|186467873|gb|ACC83674.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nostoc punctiforme PCC 73102]
          Length = 611

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 236/441 (53%), Gaps = 5/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  ++K    +L  A  D+LTG+PNR  F+ RL   L+ +  + + +  V+ +D D++K 
Sbjct: 166 INSRQKLQSKLLDIALHDSLTGLPNRVLFMRRLDNALNRAKQESSYQFAVLFLDCDRFKV 225

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD++L+S+ RR+   L   D LARL G+ FGI+L    +       A  + 
Sbjct: 226 VNDSLGHLVGDELLISIARRLQACLIPIDTLARLGGDEFGILLEKITDINIAIQVADRIL 285

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           + +++   L   E+ + ASIG +           +L++A+ AMY AK +G      F   
Sbjct: 286 QQLSLAFKLSRYEVFMNASIGISWGNKDYDRPEYLLRDADTAMYRAKAQGRAKYHVFNPA 345

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +       + ++ DL  AVE  E  + Y PI+ L+  +I G EAL++W HP  G +S +E
Sbjct: 346 MHQEAIQLLELENDLRRAVERQEFLVYYQPIVSLITGKISGFEALVRWQHPTRGLVSPTE 405

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815
           F+ +AEE  +I AIN ++L+     +  W+ Q   P P+ I +N++++  L     E + 
Sbjct: 406 FIPVAEETGLINAINTWVLQSACHQLSIWQHQPVTPEPLTISVNLSARLFLQPNFVEQID 465

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +I +T  +P+ ++L  +ESV+M N    +++  +L++  I L +DDFGT  S LSYL  
Sbjct: 466 RIIYETKINPTYLELEITESVIMENTNAIKIIFQQLKQRSIKLVMDDFGTGYSSLSYLHS 525

Query: 876 IPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P + +K + S +    + +  +  + ++I +A ++  + IA+ +  E  + +L  + C+
Sbjct: 526 FPLNALKIDKSFVKRMQDNKENMGLVPAMIGIANSMGMSAIAEGVETEEQLAQLRSLNCN 585

Query: 934 YIQDSHVASPLGFNSILKLLK 954
           + Q    + P+    ++KLL 
Sbjct: 586 FAQGFLFSEPIEQQLVIKLLA 606


>gi|229188752|ref|ZP_04315789.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
 gi|228594729|gb|EEK52511.1| Sensory box/GGDEF [Bacillus cereus ATCC 10876]
          Length = 689

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYDV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 THLLAIEVTEGALI-HKDISKRVLLQLKEKNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|256828672|ref|YP_003157400.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577848|gb|ACU88984.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 701

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/586 (22%), Positives = 259/586 (44%), Gaps = 25/586 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---------RVTTTPDIA 435
             I+  L     +Q +    ++  L      +     ++V D          +   P  A
Sbjct: 126 VAIEIALYKHAAAQALQKSEQQYRLLFDSMLNGFALHEVVTDDKGKPRDLLFLDVNPAFA 185

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           +   L +  + G     L        +         +  +    +   R  +      ++
Sbjct: 186 SFFDLPAKDIIGRSLRQLS-------EKVEPYWIDILA-KTALTRESIRFDSFAG---FV 234

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                 ++ S     +   I  D T +K + + +    F D LT +PNR   LDR+   +
Sbjct: 235 DKHFSVVAFSP-QPRQVAAIFEDTTRRKDAEKHLQHRTFHDALTNLPNRALCLDRIQQAM 293

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           + S   D+    V+ IDID++K +ND LG  VGD +L S+   + + +   D +ARL  +
Sbjct: 294 ERSQVRDDYLFAVVQIDIDRFKDVNDSLGHLVGDQLLQSVGHVLLDTVSAVDTVARLGDD 353

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L    +          ++ ++   +++    I ++A +G     +   +    L+
Sbjct: 354 EFVVLLEELPSKKTGTATIKKIKSALNRTLDIEHHSIHISACLGALFGPNECTSPENFLQ 413

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL-MD 732
            A +A+ HA+ +G + +  +           +  +  L  A+  +E +L   PI  +  +
Sbjct: 414 GANIALRHAQEQGLDQLRFYAPEMQDKAIKKLDTETRLRNAISENEFFLALQPIFSITQN 473

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W     G +  SEF+ IAE+  +I  I  ++LE+  + + SW ++    
Sbjct: 474 ATLSGFEALLRWKPKHRGWVPPSEFIPIAEQTGLILPIGQWVLEQSCKVLHSWAEKYPGN 533

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++   D +L   + + I     +P+++KL  +ES VM NPE +   L  ++
Sbjct: 534 TLSVSVNLSARQFSDPDLVHNLFSCIRHNRINPTQLKLEITESDVMTNPEATIQKLRIMK 593

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIET 911
           ++G+++ +DDFGT  S +SYL   P DT+K + S +T         I+R+II +A N+  
Sbjct: 594 ELGLAILVDDFGTGYSSMSYLQRFPIDTLKIDRSFVTQLDKHANRVIVRTIINLAHNLGL 653

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +++A+ I  E     L  MGC+Y Q  H + P+  + I   +    
Sbjct: 654 SVVAEGIETEAQCLTLQEMGCEYAQGFHFSRPILLDEIDDFISRHL 699


>gi|258620323|ref|ZP_05715361.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573]
 gi|258587202|gb|EEW11913.1| PAS domain S-box/GGDEF domain protein [Vibrio mimicus VM573]
          Length = 684

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 137/583 (23%), Positives = 260/583 (44%), Gaps = 36/583 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSM 445
            Q         + +     + +L      D +    +  D  ++  P  A +LG      
Sbjct: 116 AQDTSEKQILVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDT 171

Query: 446 HGPIRNWLPYIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMII 497
              +   L  + I+++    F + L S +  R        R  +E +V+           
Sbjct: 172 QKLLGENLSRLFIDEKTKTVFSSQLASLLTERPLICLTGPRCGFERKVQLHAGS------ 225

Query: 498 RIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               +  S   ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   + 
Sbjct: 226 --TSILGSQSQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI- 278

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                +     ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ 
Sbjct: 279 ----QNETPLVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDE 334

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG+IL    ++      A  +   I  P +L      +  SIG   +      +  +L+N
Sbjct: 335 FGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQN 394

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  
Sbjct: 395 ADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFS 454

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I G EAL++W HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P 
Sbjct: 455 INGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPG 513

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + INI+ +   + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+
Sbjct: 514 RVAINISPEQFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKL 573

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G +L++DDFGT  S L+YL   P D +K + + ++      K++ ++ +II + +++  T
Sbjct: 574 GFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLT 633

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++A+ +  +     L+ + C  IQ  H   P   + + +L  +
Sbjct: 634 VVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|254514971|ref|ZP_05127032.1| hypothetical protein NOR53_724 [gamma proteobacterium NOR5-3]
 gi|219677214|gb|EED33579.1| hypothetical protein NOR53_724 [gamma proteobacterium NOR5-3]
          Length = 681

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 124/681 (18%), Positives = 276/681 (40%), Gaps = 21/681 (3%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           +       +  +  L  + FY      +     ++ +++  +        +     +   
Sbjct: 6   LLTSLSYWVLSLLWLVILGFYLTSRGQAQEDRNVSILLVILSIDAFRTVFESVYFGLYFN 65

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
                     +   +A+     + ++ P L+  L  +VIL    +   +       +   
Sbjct: 66  S-----LYGILSPSIAVELAKPSLVLLPKLINILAGLVILF-ILIRNWLPRAIREKRASD 119

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--IN 459
              +  S     + + +         +      A + G     + G        IH    
Sbjct: 120 DALQLASTVFTHADEGIVIMSPEGVTLDVNAAFAALSGYGRAELIGSKVG----IHRSKE 175

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             ++F   +        G        R      +   + +  +   +G+I+R++ +  D+
Sbjct: 176 HSNSFYAEIWRAAREE-GSWSGVIWNRHKSGVVYPAQMSVTAVMGPDGEIVRFVCMFTDV 234

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            E  +    +   A  D LTG+PNR    DRL+  +    T       V+ +D+D +KK+
Sbjct: 235 AESVEQQRQLEHLAHFDLLTGLPNRSLLSDRLSQAVLQCETRSQ-SVAVLFVDLDDFKKL 293

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G    D +L+ ++  +   L+  D LAR  G+ F  +L + ++ ++       + +
Sbjct: 294 NDQYGRPAADRLLLEVSSNMQGALRSVDTLARFGGDEFVAVLPNLDDEMQCETILTKLME 353

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  PI + +  ++++AS+G   +        +++++A+ AMY AK +G    + F  S 
Sbjct: 354 GVRQPIKIADDNVSLSASMGVTLYPQDSADPEQLIRHADQAMYLAKGKGKGVWQYFDTSR 413

Query: 700 F--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                ++  ++  +  A+ N    L + P+I+L  +E+VG+EALI+W+      +  + F
Sbjct: 414 DIAFQEQSRLQGSIRRALINGGFVLHFQPLIQLATQELVGVEALIRWETDDGECLEPAAF 473

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   +   +   +  ++L      I +W +Q     I + +N+    L        +  L
Sbjct: 474 LGATQNNALAVDLGDWVLRTAMAQIEAWSEQGLR--IGVSVNVDGFHLQQPGFAARLAEL 531

Query: 818 ISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++     +P+ ++L   E+  + N E    ++    ++G+S  +DDFGT  S LSYL  +
Sbjct: 532 LATHALVNPANLELEVLETSALDNLEAVATVMAECTELGVSFAIDDFGTGYSSLSYLRRL 591

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +         ++I+  +I +A   + T++A+ +  E     L  +GC+ 
Sbjct: 592 PAQRIKIDQSFVRDMLDDASDLSIVEGVIGLAHAFKRTVVAEGVESEEHCHALLSLGCEL 651

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q   +A P+   ++ + L++
Sbjct: 652 AQGYGIARPMPAEALPQWLED 672


>gi|170760605|ref|YP_001785694.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407594|gb|ACA56005.1| putative diguanylate cyclase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 862

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 126/450 (28%), Positives = 233/450 (51%), Gaps = 10/450 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++  +  +  DITE KK  E IL  A+ D+LTG+ NR+  ++ +   +      +N R  
Sbjct: 417 EVDYFALLLTDITENKKDKEKILGLAYYDSLTGLSNRKKIIETINKTISN---YENERFA 473

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG  VGD VL  ++ R   LL     + RL G+ F II+ +  + 
Sbjct: 474 VLFIDLDHFKSINDTLGHDVGDYVLEKVSARFKMLLSPKHKIGRLGGDEF-IIVQNITSI 532

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +  ++   I   + ++ + ASIG + +      +S ++KNA+ AMY AK  
Sbjct: 533 SDAEKLACKICTTLNHSIKYKKDDLFIGASIGISIYPEDGKDTSTLMKNADAAMYAAKKN 592

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GG   E +   ++    D ++++  L  A+E +EL + + PI  L   +I+ +E+L++W 
Sbjct: 593 GGYKYEVYSRSMNERALDDLILENRLRRALEKNELLVYFQPIYHLKTSKIIAMESLVRWK 652

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 I  ++F+ +A+ +  I  I+ ++L +       W+ Q     +++ +NI+ K +
Sbjct: 653 F-NNKIIGPNQFIPLAKNIGEIANIDNWVLNKACSQCNLWQKQN-NKSLYVSVNISFKQM 710

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + +  ++  T   PS + L  +E   M + + S   L  L++ GI ++LDDFGT
Sbjct: 711 KDKNFVDNVLNILKTTKLKPSYLCLEITEDEAMEDVDLSIRTLESLKRHGIKISLDDFGT 770

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSY+  +P D +K + S++    +   +  I++SII M+K+++  IIA+ +     
Sbjct: 771 GYSSLSYVTKLPIDNIKIDKSIIKNIHKDNKSLQIVKSIILMSKSLDINIIAEGVESIEQ 830

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++ L  + CD+IQ  +++ PL   +    +
Sbjct: 831 LEILQELDCDFIQGFYISEPLPIKTFESKI 860


>gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille]
 gi|151282068|gb|ABR90478.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 876

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/815 (20%), Positives = 320/815 (39%), Gaps = 34/815 (4%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
           Y W           +     +   V  +LA +  + +++  + +          V+    
Sbjct: 66  YFWFRETIFK-EAIYLCEMALAACVIIVLASYHPMPWLIAIAGIFPLVLRTRSAVIAISL 124

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
           +          L +  + +       A    L + L   L+ NR      +        I
Sbjct: 125 LAILGYFLGHELGASTVDLLPDFFATACIGWLSVLLAKTLNLNRVTLHQAHTNERRFNAI 184

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL------- 346
           A +    F        I     A   +          ++   R VL              
Sbjct: 185 ARVTRHIFIITDKHYRIKFANPALQEVIGYSIDEI--IRNAMRPVLHSDDEAAHKDKLRE 242

Query: 347 ---IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFS 402
                   +     +  +  + I        ++    + G    I+ +       Q +  
Sbjct: 243 LRDTPHSTVFSRHRMRHKDGHWIWLETRGYNMLHDAAINGLVFSIEDITLRKEAEQKLLE 302

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL-------- 453
           +       +  +  +++  D       +        G  +   + G     L        
Sbjct: 303 ETALLRAVLDLNPSMIYAKDNEGRFTISNQSFQKRFGFDSEDELRGKTALDLCQKIAGSK 362

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             +      +     D  V      LQ  E R     +   W      P+ +  G  +  
Sbjct: 363 DELSPEVIADEIQRQDLQVMQSGQPLQDLEVRGFWRQDMDRWFHTSKYPLPDVKGKTIGV 422

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +G+  DIT++K++   I   A  D LT +PNR+  ++ L T ++ S    +   T++  D
Sbjct: 423 LGVTRDITKRKQTELQIEYQAMHDMLTDLPNRRFLVNTLNTAMETSRLRQS-SLTMLFCD 481

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +ND  G   GD  L+ +++RI   L   D +AR  GN F I+  + ++  +   
Sbjct: 482 LDFFKSVNDTHGHDFGDQCLIEISKRIVTALPTADFVARFGGNEFVIL--TNSSLAEATI 539

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +++  +      + +  SIG A   +   + ++++++A+ AMY AK RG N  
Sbjct: 540 KANTIMAAVSERLIFDNVVVKIQTSIGIAQLNAGHQSPADLIRDADAAMYQAKERGRNRT 599

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           E +  +          +   L  A+E +EL + Y P + L D  + G E L++W+ P++G
Sbjct: 600 EIYDAALQSKTTKHARMDVALRFALERNELSVAYQPKVLLADGSVQGFELLLRWNSPEYG 659

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNE 809
            IS +EF+ IAE   M+  I ++ +E+  + + +W+ Q      + + IN++ + LL   
Sbjct: 660 LISPNEFIPIAETSGMVVPIGMWAMEQACKQLAAWQQQYPEMGSLTMAINVSMRQLLQTS 719

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               ++ +++ +   P  ++L  +E+  M NP ++   L  L+K+G+ L LDDFGT  S 
Sbjct: 720 FFSQVRDILNSSGVIPQMVELELTETSAMANPLQTMENLSMLKKLGVRLALDDFGTGYSS 779

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P D +K + + + G    +    I+R ++ +A+ +     A+ +     I+EL
Sbjct: 780 LAYLQKLPIDILKIDKAFVRGIGSNQSDTEIIRLMMALAQTLNLQTTAEGVETFEQIQEL 839

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL--KERFPLV 960
            +MGC+  Q    ++PL       L+    RFPLV
Sbjct: 840 KKMGCNLGQGFLFSAPLTAQEAEALICTSHRFPLV 874



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 81/304 (26%), Gaps = 24/304 (7%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
              +L Y ++ F  +  + +       +    +          F+  +        +  Y
Sbjct: 20  TVSLLLYAALLFNVVVLVYDSNLALSPLGLGAAIALTGLLGASFVRYFWFRETIFKEAIY 79

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           +    +A   I+   S++      +IA I    +        I                 
Sbjct: 80  LCEMALAACVIIVLASYHPMPWLIAIAGIFPLVLRTRSAVIAISL--------------- 124

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
                    L   +   L    +           +  +   + + +           ++ 
Sbjct: 125 ------LAILGYFLGHELGASTVDLLPDFFATACIGWLSVLLAKTLNLNRVTLHQAHTNE 178

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            R +     +  I    D         P +  ++G +   +        P +H +D    
Sbjct: 179 RRFNAIARVTRHIFIITDKHYRIKFANPALQEVIGYSIDEIIRN--AMRPVLHSDDEAAH 236

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L          +    R+R  D  + W+  R   M   +  I   +    DIT +K+
Sbjct: 237 KDKLRELRDTPHSTVFSRHRMRHKDGHWIWLETRGYNML-HDAAINGLVFSIEDITLRKE 295

Query: 525 SLEG 528
           + + 
Sbjct: 296 AEQK 299


>gi|226946915|ref|YP_002801988.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226721842|gb|ACO81013.1| GGDEF domain protein [Azotobacter vinelandii DJ]
          Length = 689

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 223/436 (51%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +   K+   ++  A  DNLT +PNR    DRL   ++ +  +  +   V+ ID+D +K I
Sbjct: 250 SALSKANSELMQLALYDNLTKLPNRMLLADRLGQAIEKARREHKV-FAVLFIDLDGFKAI 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD +LV +T+RI   ++  D +ARL G+   I+L         A  A  + +
Sbjct: 309 NDAYGHHLGDLLLVEVTQRIRGSVRGQDTIARLGGDE-LILLTEIGEPTDAAKIAGKLIE 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  P ++   E+ V+AS+G A +    +   E+L NA+ AMYHAK +G +    F  S 
Sbjct: 368 TIRQPYSIEHHELFVSASVGIAVYPDDGLAPHELLVNADAAMYHAKEQGRDGYCFFENSM 427

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +++ + +DL  A+E  EL L Y P +   D  I+G+EAL++W HP+ G +S  +F
Sbjct: 428 NANAQEQLRLLQDLRHALERDELRLHYQPKLIAPDGPIIGVEALLRWQHPERGLLSPDQF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+     I  WR         I +N+++      +L + ++  
Sbjct: 488 LPLAEKTGLIVPIGNWVLDEACAQIQRWRAA-GHTSWNIAVNLSASQFAHAKLIDSVRTA 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LQRHGLEAHNLTLEITESTAMRDADSSLAVLEQLAAMGVGISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K +   +    +     AI+ +II + + +   I+A+ +      K LTR+GC+ +
Sbjct: 607 ANELKIDRGFVNELGQGGDDAAIVSAIIALGRTLGLKIVAEGVETPEQQKHLTRLGCNLL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 667 QGYLLGRPMPAEQLIE 682


>gi|149376883|ref|ZP_01894638.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149358775|gb|EDM47244.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 753

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 220/441 (49%), Gaps = 6/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I++++   + +      D LTG+ NR+ F++ L   L ++      +  +++ID+D+++ 
Sbjct: 304 ISQRQAVQKDLARLETTDALTGLANRRFFMEDLAHTLSIADRQMR-QAALVMIDLDRFQM 362

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD++L+ +  R+  L     ++A   G+ F +      N   + +    ++
Sbjct: 363 LNDSLGHQFGDELLIKVAERLNALSDEKVMVAYSGGDEFMVCQQHVENIDDVINLLGQIK 422

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +    P  +   E ++TA++G A +  S + +  +L+NA++A+Y AK +G N  + +   
Sbjct: 423 QCFEEPFAVQGEEHSITATMGVAVYPQSGLDADTLLRNADVALYRAKEQGRNTYQFYTEG 482

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               + + ++  +DL  A+ N E  L + P + L D  I  +EALI+W HP+ G +   +
Sbjct: 483 MQDREVMRLELDKDLNHALANDEFVLYFQPQLDLNDSSINSVEALIRWQHPRRGLLPPVD 542

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  I  +++    R +  W+       + I +N++ ++L D  + + +Q 
Sbjct: 543 FIPLAEESGRITDIGRWVVMAACRQLAKWQK-GPYSHLRIAVNLSGRELDDESIVDHIQE 601

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +       SR+++  +E + + N E +   L +L K+G+ L +DDFG   S L YL   
Sbjct: 602 ALESNGVPASRLEVELTEEIFIQNIEHNLNQLTKLHKLGVHLAIDDFGVGYSSLGYLRDF 661

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +T  TE      I R++I +A N+   ++A+ +     +  L    CD 
Sbjct: 662 PVDLLKIDRSFITDVTERHDDAVITRAVINLAHNLGIQVVAEGVETHEQLTFLKNHRCDL 721

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ   ++ P+    + + L  
Sbjct: 722 IQGYLISRPIPAGELERALSA 742


>gi|297537602|ref|YP_003673371.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256949|gb|ADI28794.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylotenera sp. 301]
          Length = 684

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 238/440 (54%), Gaps = 6/440 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K + + +   AF D +T +PNR  F +R+   +  S     L   +MVID+D +K +ND
Sbjct: 238 RKHAEDRLQQLAFYDEVTKLPNRHYFKERMEGAVASSIRYKKL-CCIMVIDLDDFKIVND 296

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  V DD+L+++ +R+  +++  D+L R+ G+ F ++L +   + +    A  +  ++
Sbjct: 297 TLGHNVSDDLLLAVAKRLSNVIRTSDVLCRIGGDEFALVLENILIAEEAIQVAKKIINTL 356

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P  L  RE+ + ASIG +   +       +L+NA+ AMY AK++G N  + ++     
Sbjct: 357 SQPFVLEGREVFIGASIGVSLCPTDTADIPILLRNADTAMYSAKNQGKNSYQMYQPEMES 416

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            + +   ++  L  A+EN+EL L Y P + L+  +  G EAL++W++ + G IS ++F+ 
Sbjct: 417 KNILRFSLESALRRALENNELLLHYQPQVDLISNQTTGFEALVRWNNAELGLISPTDFIP 476

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE+ +I  I  F+L         WR++ +   I I +N++ + L+   + E + A++ 
Sbjct: 477 IAEEIGLIIPIGEFVLYTACLQAQQWRER-HAVDINISVNLSGRQLIQANIVERILAIVE 535

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T    + + +  +ES++M + + +   L +L + G ++++DDFGT  S +SYL   P D
Sbjct: 536 STGLPFNLLTIELTESILMDHSKETLDKLEKLSQSGFTISIDDFGTGYSSMSYLKRYPID 595

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S ++G       +AI ++II +AKN++  ++A+ +  E  ++ L    CD  Q 
Sbjct: 596 TLKIDRSFVSGLPEDANDVAITQAIIALAKNLDMKLVAEGVETEEQLEFLRVHKCDTAQG 655

Query: 938 SHVASPLGFNSILKLLKERF 957
              + P+      + +  + 
Sbjct: 656 YLHSRPVVAEQAEQFILNKN 675


>gi|160899026|ref|YP_001564608.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Delftia acidovorans SPH-1]
 gi|160364610|gb|ABX36223.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Delftia
            acidovorans SPH-1]
          Length = 1120

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 134/618 (21%), Positives = 265/618 (42%), Gaps = 35/618 (5%)

Query: 363  DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
             + +     +  L     L    ++Q + A  +  Q          + +      +    
Sbjct: 469  GSLVWVELHISALGHGPSLRLMALVQDISARRHLQQMQRDGSRHLRMVIQRLPLGLAMLQ 528

Query: 423  IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYRRGRLQ 480
                      +   + G  + +       W   +  ++  R   +   ++     R    
Sbjct: 529  EDGRFAYWNEEFMRLAGHGATAGM-DGDGWWRNMCPDEARRQRMQRRFEAAQARARVAQS 587

Query: 481  --------------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                           E+++  +D     + I    +          + I  D +++K + 
Sbjct: 588  PHGSESDSCGTLNSEEYQLIGSDGCARSVSIGGMLLDE------GCLLILQDQSQRKTAE 641

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            E I   AF D LTG+PNR+  +DRL   L  S         VM++D+D +K  ND LG+ 
Sbjct: 642  EEIRRLAFYDALTGLPNRRLLVDRLQQALASSRRRGRC-GAVMLLDVDNFKAFNDSLGLE 700

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSI 641
            +GD +L  +  R+ + L     LAR SG+ F ++L        + + K+      MR  +
Sbjct: 701  LGDVLLRMIAERLAQSLGREATLARHSGDDFVVLLEDLGKDSMHAASKLEGEVQRMRSLL 760

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              P+ L  +   +T SIG + +   ++++ E+L+ AE+AMY AK  G N ++ F      
Sbjct: 761  LQPLQLSGQSCHITLSIGASLFGEQELSADEVLRRAEMAMYQAKGMGRNTLQFFDPQLQA 820

Query: 702  SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              R    +++++   +  S+  L Y P +   +  IVG E L++W+HP+ G +  S F+ 
Sbjct: 821  VLRSRTAMEQEMREGLVRSQFVLYYQPQV--ANGRIVGAEGLLRWNHPREGLVPPSLFVS 878

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            +AEE  +I+ +  ++L    R +  W  + +M  + + +N++ +        E +   + 
Sbjct: 879  LAEETGLIQQLGEWVLGEACRQLAQWAAEPDMACLMLAVNVSPRQFHQARFVEQVLQALK 938

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +   +P  +KL  +ES+++ + + +   +  L+  G+  +LDDFGT  S L+YL  +P D
Sbjct: 939  EHGANPRLLKLELTESLLLADVDDTAAKMATLKAHGVGFSLDDFGTGYSSLAYLKRLPLD 998

Query: 880  TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             +K + S +    S     AI R+I+ +  ++   +IA+ +  E   + L    C   Q 
Sbjct: 999  QLKIDRSFVRDVLSDPNDAAIARTIVALGTSLGLQVIAEGVETEAQRQFLEDQHCHAWQG 1058

Query: 938  SHVASPLGFNSILKLLKE 955
              ++ P+   S   L+++
Sbjct: 1059 YLLSPPVPVRSFEALVRQ 1076



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 75/282 (26%), Gaps = 25/282 (8%)

Query: 272 YLHWNRWHAKVGYITFSGIA-CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
           +L       +V  +              ++ +     +    +  A +     Y      
Sbjct: 238 FLGTADVSIRVHDLVQDLHERGFLGRLALAMHDAGPVSP---LPPAGVSPLPLYLGAAWP 294

Query: 331 MKGYERAVLLIPAWILIFIWF----------IGLWMAITKRLDNDIIQPALVGGLVLIVI 380
            +G E   L     +++                         +          G+++ V+
Sbjct: 295 ERGQEAVGLGDTGQVVLEQTLQAQDRLWRLNFIPVSTALSWTERAQPLVLFALGMLVSVL 354

Query: 381 LIGFTVIQHVL------ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPD 433
           L                     S+ +     R       +   V   D    + +     
Sbjct: 355 LASLAAAWWRRHPSSWAQLRASSRSMRESDARFQALFEQAAVGVVQIDAANGNVLHVNRR 414

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              I G  +  +       L  +     +  R +L      +R  LQ E ++R +D    
Sbjct: 415 YCDITGHEAQQLCQRP--LLALVAAETVEGDRLLLQELAAGQRRALQIERQLRRSDGSLV 472

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           W+ + I  +   +G  LR + +  DI+ ++   +     +  
Sbjct: 473 WVELHISAL--GHGPSLRLMALVQDISARRHLQQMQRDGSRH 512


>gi|206968444|ref|ZP_03229400.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
 gi|228951038|ref|ZP_04113158.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229068233|ref|ZP_04201538.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|206737364|gb|EDZ54511.1| sensory box/ggdef family protein [Bacillus cereus AH1134]
 gi|228714892|gb|EEL66762.1| Sensory box/GGDEF [Bacillus cereus F65185]
 gi|228808645|gb|EEM55144.1| Sensory box/GGDEF [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 689

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYDV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 THLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|217958084|ref|YP_002336628.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|222094300|ref|YP_002528359.1| sensory box/ggdef family protein [Bacillus cereus Q1]
 gi|229137351|ref|ZP_04265964.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
 gi|229194863|ref|ZP_04321647.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|217068064|gb|ACJ82314.1| sensory box/GGDEF family protein [Bacillus cereus AH187]
 gi|221238357|gb|ACM11067.1| sensory box/GGDEF family protein [Bacillus cereus Q1]
 gi|228588619|gb|EEK46653.1| Sensory box/GGDEF [Bacillus cereus m1293]
 gi|228646111|gb|EEL02332.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST26]
          Length = 689

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 245/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQILNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   +  + K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGIHLFREHDDQFVMLIENIT-KERVEGVSKNILKRISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|289207706|ref|YP_003459772.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Thioalkalivibrio sp. K90mix]
 gi|288943337|gb|ADC71036.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Thioalkalivibrio sp. K90mix]
          Length = 685

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/475 (25%), Positives = 229/475 (48%), Gaps = 33/475 (6%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  E ++ +A  D LTG+PNR+ F DRL   +   A +      V+ +D+D++K 
Sbjct: 211 VVERNRHAERLIHHASHDPLTGLPNRRLFHDRLEHAIARYAREPESLFAVLFVDLDRFKL 270

Query: 579 INDVLGIAVGDDVLVSLTRRI---------------GELLKFPDILARLSGNRFGIILIS 623
           +ND LG   GD++L  + +R+                +  +  D LARL G+ F I+L  
Sbjct: 271 VNDSLGHTAGDELLAQVGKRLLTALRQNDTVSRPGGNQNTRPDDTLARLGGDEFTILLEG 330

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT------------SSKITSS 671
            +  +     A  ++  +  P ++  + + VT SIG A+                   + 
Sbjct: 331 LHEPVDALRVAERLQAILHQPFSIAGQTVYVTVSIGIATRPYGQACPVVSPDQDGPTCAE 390

Query: 672 EMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           ++++ A++AMY AK  G          + S   + + ++  L  +VE +   + Y PI+ 
Sbjct: 391 DLMREADMAMYRAKSLGKARCEFCDPGMQSQALESLRLETSLRESVERNAFVVHYQPIMS 450

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L D  I G EAL++W+  +   +    F+ IAE+  ++  I++ +L      + +W  Q 
Sbjct: 451 LADNRITGFEALVRWER-EGELLPPDRFIPIAEDAGLVHLIDMQVLYTACSQLQAWNAQR 509

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
           + PP+ I  N++++ L   EL + +  ++  T   P +++L  +E+  +GN +     L 
Sbjct: 510 SGPPLTISTNLSARQLTRPELVDEVATILCGTDTPPEQLRLEITETATLGNLDELIATLK 569

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAK 907
            L+ +G+SL +DDFGT  S LSYL  +P D +K + + + G         +++++I MA+
Sbjct: 570 GLKALGVSLAMDDFGTGYSSLSYLHRLPLDILKIDRAFVAGLDRDEYSQRLVQTVINMAR 629

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL-KERFPLVK 961
           N+    +A+ +        L  +GC   Q  + + P+  +    LL  ++ PLV 
Sbjct: 630 NLGLEAVAEGVESNTHAATLRALGCTRAQGYYYSRPVPADRAGDLLAADQLPLVT 684


>gi|228956965|ref|ZP_04118744.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228802720|gb|EEM49558.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 689

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 LFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KECVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|307153583|ref|YP_003888967.1| Chase sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306983811|gb|ADN15692.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 7822]
          Length = 859

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 226/431 (52%), Gaps = 9/431 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT +PNR+ F+ +L        +D      + ++D+D +K IN+ LG   GD VL 
Sbjct: 425 YYDNLTYLPNRRLFIKKLQRSNPRQKSDYKQLIAIYLLDLDSFKMINEGLGHEAGDYVLR 484

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+   +   + LAR+ G++F + L S  +  + A  A  ++K +  P     +EI 
Sbjct: 485 EIAQRLQTQVNNKEQLARVEGDKFALWLNSLVDIDEAAQIAKDLQKLLTQPFYWQGQEIY 544

Query: 654 VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
            + SIG A         + E+L++A  AMY AKH G +  E F          R+ I+ D
Sbjct: 545 TSVSIGIAYTRRGDNFKAEELLRDANSAMYKAKHIGKDRYEMFATGMREPVVQRLQIESD 604

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   +++SE  L Y PI+ L   +I G+EAL++W+  K G IS  +F+ IAEE  +I  +
Sbjct: 605 LRRGLKDSEFQLFYQPIVSLKTGKIAGVEALVRWNSLKRGFISPGDFIPIAEETGLIIPL 664

Query: 771 NLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L+   R +  W  Q    PP+ I +N++S+      L + +Q ++ K       +K
Sbjct: 665 GEWILQEACRQMQEWHLQFPQNPPLMISVNLSSRQFSQPNLVQQVQFILDKINLDRKSLK 724

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++M + E +  LL RL+ +G+ L++DDFGT  S LSYL   P DT+K + S + 
Sbjct: 725 LEITESMMMNDVEAAIELLKRLKDLGLRLSIDDFGTGYSNLSYLHRFPVDTLKVDQSFVR 784

Query: 890 GST-----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                   ++   I+R++I +  N+E  +IA+ I  E  +K L  +GC+Y Q    A PL
Sbjct: 785 RMNSGESHDRYAQIVRTVIMLGHNLELDVIAEGIETEEQMKILQSLGCEYGQGYFFAKPL 844

Query: 945 GFNSILKLLKE 955
               +  LL +
Sbjct: 845 PSEQLAALLAK 855


>gi|229588015|ref|YP_002870134.1| hypothetical protein PFLU0458 [Pseudomonas fluorescens SBW25]
 gi|229359881|emb|CAY46734.1| conserved GGDEF/EAL domain protein [Pseudomonas fluorescens SBW25]
          Length = 894

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 150/568 (26%), Positives = 270/568 (47%), Gaps = 17/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S +     +         P    I   ++  +HG     LP +
Sbjct: 333 RRTATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSAEEVHGHRLAQLPAL 392

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L        +    Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 393 -----ENLSELLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 447

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID
Sbjct: 448 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDSPISLLLVDID 504

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L     LAR + N F ++L  + +       A
Sbjct: 505 NFKRINDSLGHQTGDKLLISLARRLRNSLSTGGSLARFASNEFAVLL-DDTDLETGQLVA 563

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I+VT S+G A           +++NA LA++ AK  G + V+ 
Sbjct: 564 SQLLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 623

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++G+EAL++W+HP+ G I
Sbjct: 624 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMI 683

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  ++  +  R          M  + + IN++ K   D +L  
Sbjct: 684 RPDQFISVAEETGLIIPIGKWIARQACRMSRQLTAA-GMGNLQVAINLSPKQFSDPDLVA 742

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +     + ++L  +E +++   E +RL L +L+  G++L +DDFGT  S LSY
Sbjct: 743 SIATILKEERLPANLLELELTEGLLLEATEDTRLQLDQLKSFGLTLAMDDFGTGYSSLSY 802

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K + S +      +  + I  ++I MA N++  ++A+ I     +  L R 
Sbjct: 803 LKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKLKVVAEGIETAEQLAFLRRH 862

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958
            CD  Q      P+    +L +LK R+P
Sbjct: 863 RCDVGQGYLFDRPIPGAELLAMLK-RYP 889


>gi|190889820|ref|YP_001976362.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695099|gb|ACE89184.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 777

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 140/749 (18%), Positives = 288/749 (38%), Gaps = 50/749 (6%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271
             R  + I   A A+    + +     L+    +      +        LS +       
Sbjct: 43  AGRRKLWIGASAFAFGTGVWATHFIAMLAYDGGM-PISYQLGLTALSFLLSVAGSW--AA 99

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA---SIARITLASIVLYYTYFIIY 328
            L  ++   +   I    +  + I          +      +    +    +     +  
Sbjct: 100 ILVASKGRGRFSSIQGGVLMALGIAAMHLTGMQAIETQAEILYDPYMTVTAVLAGALLSS 159

Query: 329 HGMKGY----------ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                +            ++  + A      +     + +      ++    L   L+  
Sbjct: 160 IAFHAFFHLKGLRRLLASSITFVLAICA-LHFISMASITLVPDPGKEVPATVLDTSLLAT 218

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++++  T +  +     F +   +D    +     S + +         + T      + 
Sbjct: 219 IVVVAATALILIAIAVAFFESHLTDLRGLA---NASQEGLVILR-EGRIIDTNERFQGLS 274

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     + G   +               +L +  G  R     E  ++  + +   + + 
Sbjct: 275 GWKLADLSGKAPSI--------------VLTAVQGQNRP---GETLLKTRNGREIAVEVN 317

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              +     +    +    D+TE++++ E I   A  D LT +PNR  F  R+   L ++
Sbjct: 318 TSRIVYRGHNCD--VLAVRDLTERRQAEEIIEHLAHHDVLTDLPNRSLFDKRIRQALQMA 375

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               N    +  ID+D++K +ND+ G A GD +L  +   +  +    D +ARL G+ F 
Sbjct: 376 K-GKNSEVALFYIDLDRFKTVNDIFGHAEGDRILCKVAAILRRVADERDTIARLGGDEFA 434

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           II  +          A A+    A  +++      V  S+G A + +      E+  NA+
Sbjct: 435 IIQSAGQQPAAAQKLAAAILDEFAAEMDMARDPTAVGVSLGIALYPADGSDPDEICNNAD 494

Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+Y  KH G      F          R  I+ +L  A+  +++++ Y P++     EI 
Sbjct: 495 IALYRVKHGGRGKACFFNAEMDEATRARRQIESELRHAIIRNQIHVSYQPVLDAQSGEIS 554

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W+ P  G      F+ IAEE   I  +  ++L++  ++   W D     P+ I
Sbjct: 555 GYEALMRWNRPGHGLSEPDIFIPIAEESGSIVQLGEWVLQQACKEAARWPD-----PLRI 609

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++    +   LCE ++A++ +T  +P+R+++  +E+ ++ + +R    L RLR +G+
Sbjct: 610 AVNVSPVQFMLPNLCERIEAILKETGLAPARLEIEITEAALIRDRDRVMATLQRLRSLGV 669

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914
            + +DDFGT  S LS L   PFD +K + S          A  I+R+II +  ++   ++
Sbjct: 670 HIVMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAAARSIVRAIIGLGHSLGMPVV 729

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            + +  E   + +   GC  +Q   +  P
Sbjct: 730 TEGVETEAQRQIVVEEGCAQVQGFLLGRP 758


>gi|146280132|ref|YP_001170289.1| hypothetical protein Rsph17025_4133 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558373|gb|ABP72984.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 875

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 168/781 (21%), Positives = 310/781 (39%), Gaps = 45/781 (5%)

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIP--TFAMAWVVLGYISIDFGFLSK 241
            + S  +Y  ++I  A  +A    + + +  S +       A  +  L +  + FG LS 
Sbjct: 127 RITSVQIYNFLLIYCALFIACLFLLHFDIKHSVLGPAQTAVAYLYPALWFSVLAFGILSL 186

Query: 242 LVNLPSG--ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
           +          L        A + +   ++   ++       +  + +     +  L   
Sbjct: 187 IFFDHGKRSFPLFLLVIGIAAEAVADFWYVRAIMNGTYTPGGMTLLLWLSTTGLVALAAA 246

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
                +  A + +  L                   + A+  I   I +    +       
Sbjct: 247 EHLALIRRAGLTQSALRRRTDAGIA----------QAALPGIVIAIFMLSGSLSGAFGRN 296

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDI 417
                      L+   V  +           L T            R+ LA  +  + D 
Sbjct: 297 WEYVAFSSVLGLIFAAVAALREYAVIRSHEALRTEAEESREEVSLSRRRLAAVLESTSDA 356

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V  +D          +  + L        G   ++                 S    R+ 
Sbjct: 357 VVVFDRSMRVEYFNENAVSAL--EGVGAPGLGASFTEIFPETSFPGALVRFRSA-QSRQE 413

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            ++Y+  +   D    W+ I   P   SNG +  +     D+TEQ+ + E +   A  D 
Sbjct: 414 PMEYDALLSGPD---RWLSINGYP---SNGGLSIF---FRDVTEQRTARERMAHLAHHDP 464

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +TG+ NR  F + L   + L         +V++ID+D +K +ND LG  +GD VLV + R
Sbjct: 465 MTGLANRMKFSEELQRCVSL-----ETPVSVLLIDLDNFKDMNDTLGHPLGDAVLVEIGR 519

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+ +L++  ++ ARL G+ F +++  + + + +   A  +   I+ PI L  + + VTAS
Sbjct: 520 RLQQLMRPGNLAARLGGDEFAMLIFGQQDRIALGAIAERVLARISAPIALPNQTVRVTAS 579

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAV 715
           +G A         +E+++ A++A+Y AK         F   +     +R  I  DL  A+
Sbjct: 580 MGIAM--DDVANRAELVRTADIALYEAKRDNRGTYRFFDGAMEIRLRERTAIIADLTAAL 637

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N+E  + Y P+  L    I G EAL++W HP  G +S   F+ IAE+  +I  I  ++L
Sbjct: 638 GNNEFVVHYQPLYELASHRICGFEALLRWTHPVRGLVSPEVFIPIAEDTGLIHQIGAWVL 697

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                    W        + I +N++ +   D  L   +  ++ +T   P+R++L  +E+
Sbjct: 698 RTACTAAADWPA-----DVRIAVNLSPRQFRDLGLPTMVARVLEETGLRPNRLELEVTEA 752

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            ++ +   +  +  +L ++GI + LDDFGT  S LSYL   PF  +K + S +TG   +E
Sbjct: 753 ALLDDSGSNLDIFAQLNRMGIRIALDDFGTGYSALSYLQKFPFAKLKIDRSFITGLPDSE 812

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +AI+ +I  MA  +   + A+ +        L    C+ IQ   ++ P+    I  LL
Sbjct: 813 SSMAIVSAICSMAHALSIRVTAEGVETRDQFDWLQTR-CNEIQGYLISRPVPAGRIPDLL 871

Query: 954 K 954
            
Sbjct: 872 A 872


>gi|294812804|ref|ZP_06771447.1| Sensory box/GGDEF family protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326441246|ref|ZP_08215980.1| hypothetical protein SclaA2_09271 [Streptomyces clavuligerus ATCC
           27064]
 gi|294325403|gb|EFG07046.1| Sensory box/GGDEF family protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 601

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 137/545 (25%), Positives = 255/545 (46%), Gaps = 17/545 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     V   P  A ++G    ++       L  +  +            +  RR R + 
Sbjct: 59  DPEGSVVHANPAFAALIGGEPAALRARPAADLLDLASDRHA--WHAYREVLRGRRSRFRC 116

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R++ +D    W  + + P+    G     +    D+ E+++    +      D +T +
Sbjct: 117 TRRLKHSDGSVLWAEVAVAPLKGGPG----AVLSVTDVGERRELRARLRHLQMHDAVTRL 172

Query: 542 PNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           PNR  F +RLT  L+ SA D     R  +  +D+D +K IND LG  +GD +LV++  R+
Sbjct: 173 PNRALFFERLTAALESSAYDHGSTGRIGLCYLDLDGFKAINDTLGHRIGDRLLVAVAERL 232

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            E      ++ARL G+ F +++     + ++ + A  +  ++  P +L  + ++V+ASIG
Sbjct: 233 TECTGDGHLVARLGGDEFAVLVEESTGTEQVTEVARTVLDALQRPFDLDGQRLSVSASIG 292

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVEN 717
                 +  T++ +++ A+  +Y AK  G      F          R  +   L  AVE 
Sbjct: 293 VVERAVAGTTATGLMQAADTTLYWAKEDGKARWTLFDPERNAHRVTRQALSSTLRPAVER 352

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P++ L D    G+EAL++W+HP++G ++ + F+ IAEE   I  +  ++L  
Sbjct: 353 GEFALEYQPLVGLADGVTRGVEALVRWNHPEFGTLTPNRFVGIAEEDGSIVQLGRWVLRT 412

Query: 778 IARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
             R    W+      PP+F+ +N+A + + D++L   +  ++++T  +P  ++L  +ES 
Sbjct: 413 ACRQARQWQRDHPHAPPLFVSVNVAVRQVWDSDLVADVAEILAETGLAPRLLQLELTESA 472

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG------ 890
           VMG+  R    L  L  +G+ + +DDFGT  S L+YL  +P   +K +GS + G      
Sbjct: 473 VMGSAGRPLQALQALSDMGVQIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFQDEAH 532

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  I+ +++ +A  +  T+ A+ +        L R+GCD  Q    +  +  + I 
Sbjct: 533 PNPADETIVEAMVQLAHRLGLTVTAECVETSGQAARLRRIGCDTGQGWLYSRAVPPDRIG 592

Query: 951 KLLKE 955
           +L+  
Sbjct: 593 ELIDA 597


>gi|134099511|ref|YP_001105172.1| PAS:GGDEF [Saccharopolyspora erythraea NRRL 2338]
 gi|133912134|emb|CAM02247.1| PAS:GGDEF [Saccharopolyspora erythraea NRRL 2338]
          Length = 914

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 148/611 (24%), Positives = 268/611 (43%), Gaps = 16/611 (2%)

Query: 351 FIGLWMAITKRLDNDIIQPAL--VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-Q 407
            +G  +   + + +  +  AL        +VI I    +          +      E+  
Sbjct: 308 LVGAPLQPEELVSSGGVTEALHRRSDGAALVIRISAAEMDSGFVLVCADETARRRAEQDF 367

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +  V    + V          +  P    ILG  +  + G      P    +        
Sbjct: 368 ATVVAALDEGVVVVGRSGVIESANPASQRILGAPASQIIGTRPTSWPTFDESGAAMRPEE 427

Query: 468 LDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             S +    G  +     R+   D +  W+ +  R ++  +      +    DIT+ + +
Sbjct: 428 QPSSLAQWTGEPENSRVVRLVRPDGRSVWLSLTSRSLTPQDRPPHMVVTSFTDITDSRAA 487

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D LTG+ NR   L  L       + D      V+ ID+D +K IND LG 
Sbjct: 488 RERLEYEATHDPLTGLANRTLALRHLA-----VSRDRTRAIAVLFIDLDNFKLINDSLGH 542

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGDDVL  +  R+    +  D++ RL G+ F +++  E++   + + A  +  ++  PI
Sbjct: 543 GVGDDVLRIVGERLFRTSREEDLVGRLGGDEFVVLVHDESDDDVLRELATGLLAALTEPI 602

Query: 646 NLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ++  R++ V  SIG             E+L++A++AMY AK RGG   E F V    S +
Sbjct: 603 HVQGRQLHVNGSIGIVLSRPGDTRAGPELLRDADVAMYQAKTRGGGRYEFFDVELRESMQ 662

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +++DL  AV+  +L++ Y  ++ L DE  VG+E L++W HP  G +S  EF+ +AE
Sbjct: 663 RSMVLEQDLRHAVQQDQLWVAYQRVVDLRDERTVGVEGLLRWTHPVHGTVSPGEFIPLAE 722

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I +I   ML    R + + R++     + +  N++ + L D  L   ++  ++   
Sbjct: 723 QSDLINSIGAHMLRMATRQVAAERERGG-EGLRLNANLSPRQLDDPYLQVLVKQALTDAG 781

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +E+ +M +P  S  +L  LR++G+ L +DDFGT  S L+ L  +P DT+K
Sbjct: 782 LPAHALCLEVTENAIMHDPAASARVLSSLRELGVRLAIDDFGTGYSSLAQLRRLPLDTLK 841

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +T          ++ SI+ MA  +   ++A+ +     +  L  +GCD  Q  ++
Sbjct: 842 IDRSFVTDLDSSEELRVMINSIVAMAHAVGLDVVAEGVETARQLDLLGEVGCDQAQGFYL 901

Query: 941 ASPLGFNSILK 951
             P     +  
Sbjct: 902 GRPGPIERLRD 912



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 6/151 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LAS 442
             ++++V       Q +    +R  L    S D +             P + TILG  + 
Sbjct: 118 IGLVRNVTGAHRDRQALSDLADRYRLLAELSPDAICVHQ-DNIIRYVNPAMGTILGAQSP 176

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G       ++  +     R  + S         + E  +R  D     + +     
Sbjct: 177 AQLLGRPVT--DFVAPDSIPQMRKRIRSLEAPGATTPRAEAELRRIDGTTVPVELVAVHT 234

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +      ++ +G   D++ QK + E +   A
Sbjct: 235 TWEGSSAVQVVG--RDVSAQKTAEETLRFQA 263



 Score = 42.2 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 21/151 (13%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + E   LA+   G + W +D   D VT    + ++LG+         R     +      
Sbjct: 16  EREFLDLALSMHGAVRWTYDFASDEVTWAEGMDSLLGVPRAGHAELSRRLRGLVEPLVVS 75

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              T L             E  V  A++    +    R            IG+  ++T  
Sbjct: 76  ARTTPLWE-------DFDLEQPVDTAEDGQRLLHFHARA-HGEGTRTSGLIGLVRNVTG- 126

Query: 523 KKSLEGILCNAFQD--NLTGIPNRQSFLDRL 551
                     A +D   L+ + +R   L  L
Sbjct: 127 ----------AHRDRQALSDLADRYRLLAEL 147


>gi|157375530|ref|YP_001474130.1| signal transduction protein [Shewanella sediminis HAW-EB3]
 gi|157317904|gb|ABV37002.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Shewanella sediminis HAW-EB3]
          Length = 817

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 219/442 (49%), Gaps = 14/442 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           KS E I   AF D LTG+PNR  F   L   L+ +  D   +  VM ID+D +K IND L
Sbjct: 366 KSNEKIRELAFNDPLTGLPNRFMFTKHLNLSLESAKCDRG-QLAVMFIDLDNFKHINDSL 424

Query: 584 GIAVGDDVLVSLTRRIG---------ELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           G   GD +L  +  R+          E     D++ARL G+ F + L    +       A
Sbjct: 425 GHQSGDQLLHEIGDRLHRNLRSKDFCEHFSDSDMVARLGGDEFTVFLGELPSINIAEKVA 484

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + I+ PI L  +   ++ASIG A +  + +T+ E++KNA++AMYHAK +G    + 
Sbjct: 485 KRILEIISQPILLSGKSYYISASIGIACYPQNGVTTQELIKNADIAMYHAKKKGKGGYQH 544

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  +      +  +I++ +  AVEN    L + PI+      IV LEALI+W   ++G I
Sbjct: 545 FSDNLSRQNDEFSVIEQKMHEAVENERFELYFQPIVDSNTHRIVSLEALIRWYDVEFGFI 604

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AE+  +I  I  +++    R +  W+D   +  I + IN+++  L + +  +
Sbjct: 605 PPDKFIPLAEKNGLITVIGDWVIREACRQLKIWQDS-GIVDIQLAINVSAIQLNNPKFAQ 663

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   I  +   P  + +  +E+ ++   +   + L  LR  GI + LDDFGT  S LSY
Sbjct: 664 ELYQTIKNSGIIPGTLYIELTETTIINGEQEIFVTLEWLRSKGIRVALDDFGTGYSSLSY 723

Query: 873 LGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L  +P D +K + S +     +    IL ++I MA  +   ++A+ +     +  L + G
Sbjct: 724 LRNLPIDILKIDQSFIRDINDKNNNVILSAVIVMAHALGFKVVAEGVEERGHLAFLVKEG 783

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           CD +Q    + P   + I +LL
Sbjct: 784 CDLLQGYMFSRPQTADDITRLL 805


>gi|226357418|ref|YP_002787157.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319408|gb|ACO47403.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 856

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 223/439 (50%), Gaps = 8/439 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +    +   A  D LTG+PNR  F +RL  IL+ S         ++ +D+D++K +ND
Sbjct: 416 HHQLTAQLRHQAQHDALTGLPNRSLFTERLAEILEQSERS-RASTALLFVDLDEFKGVND 474

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G  VGD VL ++  R+    +  D++AR+ G+ F ++L        I   A  +   +
Sbjct: 475 TVGHHVGDYVLQAVADRLLGCARRGDVVARVGGDEFTLVLPFAEEPHAIT-VARRVLNEL 533

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
             P  +  R   + ASIG +    +      +L++A+LAMY AK    G  V   +++  
Sbjct: 534 TRPFVVQGRAFHLGASIGISVSPQAGRDGQTLLRHADLAMYRAKREKSGFAVFEAQLNQQ 593

Query: 701 RSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              R+ +  DL  A+    + L L Y P +RL D ++VG EAL++W HP  G +S ++F+
Sbjct: 594 AQLRLQLASDLREALREPGANLELHYQPQVRLHDGQVVGAEALVRWRHPHLGMVSPAQFI 653

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  MI  +  +++E   R  ++W    +   + + +N+++      +  + + A +
Sbjct: 654 PVAEDTGMIVPLGTWVMEEACRQAVAWAAAGHG-AMRVAVNVSALQFARPDFVDTVSATL 712

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     R+++  +ES VM + + S   + RLR +G+S+ +DDFGT  S LSYL  +P 
Sbjct: 713 RATGLEAGRLEVELTESAVMEDVKESVERMERLRALGVSVAVDDFGTGYSSLSYLQRLPL 772

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + + +          +++++I+ +A+++    +A+ +    + + L  +GC Y Q
Sbjct: 773 NVLKIDRTFIQNLGVNATSRSVVQAIVGLAQHLNLECVAEGVETPDEREALIEVGCRYAQ 832

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL   ++L+ L +
Sbjct: 833 GFFFAKPLPAPALLEWLSQ 851



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 4/134 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L +  S D++            +P +   LG          +     +H  D      
Sbjct: 22  YRLLIEHSTDLIALLGAEGQVQYLSPSVHAHLGYNDSCDSVANKFAYQLVHREDWPTLIK 81

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE--QKK 524
            +       R  L+  FRVR A   + WM   +  +   + DI   +    D+TE  + K
Sbjct: 82  RIHDTRPGGRAALEP-FRVRHAYGHWCWMEGTVVNLL-EHPDIRANLLAVRDVTETVRVK 139

Query: 525 SLEGILCNAFQDNL 538
           +        + D L
Sbjct: 140 AELLARTQEYTDLL 153



 Score = 42.2 bits (98), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 20/219 (9%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +     +       V  L+    I      ++ V  T      + +  +  +  +   
Sbjct: 97  FRVRHAYGHWCWMEGTVVNLLEHPDIRANLLAVRDVTETVRVKAELLARTQEYTDLLESI 156

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D  +  D     V        +LG ++  + G ++ W   +     D+   I       
Sbjct: 157 TDAFYVLDRDWRFVYVNTYAQRLLGKSAEELLGQVK-WE--VFPESVDSLVGIHYREAMR 213

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                ++E      +    W    + P                DI+ +K +       + 
Sbjct: 214 SGVPQKFEV---HYEPLELWAEAHLYP------SARGLSVSFQDISARKATERAERQRSR 264

Query: 535 QDNLT--GIPNRQSFLDRLTT-ILDLSATDDNLRPTVMV 570
              LT  G P        L    L +      +  +V++
Sbjct: 265 ILELTVQGTP----LEQVLHEVALLVEQQCPGVLCSVLL 299


>gi|70734011|ref|YP_257651.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68348310|gb|AAY95916.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 897

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 147/581 (25%), Positives = 266/581 (45%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S +     +         P    I   ++  +HG   + LP +
Sbjct: 336 RRAATSALHLFQRAVEQSANAFLLVNCDGVVEYVNPSFTAITQYSTEEVHGHRLSELPAL 395

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L        +    Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 396 -----ENLSELLFDAPSSLAKSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID
Sbjct: 451 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSDTPISLLLVDID 507

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L     LAR + N F ++L +  +       A
Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSPSGSLARFASNEFAVLLDN-TDLETGQQIA 566

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I+VT S+G AS          +++NA LA++ AK  G + V+ 
Sbjct: 567 SQLLMTLDKPMFVDNQLISVTGSVGLASAPLHGRDPQTLMRNAGLALHKAKANGKHQVQV 626

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++G+EAL++W+HP+ G I
Sbjct: 627 FTEALNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGMEALLRWNHPEKGMI 686

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  ++  +  R          M  + + IN++ K   D +L  
Sbjct: 687 RPDQFISVAEETGLIIPIGKWIARQACRMSKQLTAA-GMGNLHVAINLSPKQFSDPDLVA 745

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGN-------------PERSRLLLGRLRKIGISLT 859
            + +++ +             E +                  + +   L +L+K+G++L 
Sbjct: 746 SIASILKE-------------EQLPSSLLELELTEGLLLEATDDTHQQLEQLKKLGLTLA 792

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  ++I MA N++  ++A+ 
Sbjct: 793 MDDFGTGYSSLSYLKKFPIDIIKIDRSFIHEIPDNQDDMEITSAVIAMAHNLKIKVVAEG 852

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+  + ++  LK R+P
Sbjct: 853 IETAEQLAFLRRHRCDVGQGYLFDRPIPGSELIAKLK-RYP 892


>gi|83649309|ref|YP_437744.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83637352|gb|ABC33319.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 832

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/480 (25%), Positives = 234/480 (48%), Gaps = 24/480 (5%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G++ R     +     + +   +   A+ D+LTG+ NR +F   L   +  +A   
Sbjct: 354 RDEIGELARAFKSMD--GNLRATASKLTFIAYHDSLTGLANRHTFGAFLHRAIAEAARH- 410

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA------------ 610
           + R  ++ IDID +K +ND LG   GD VL  +++R+  +L+  D++A            
Sbjct: 411 HFRLGLLYIDIDGFKDVNDSLGHEAGDLVLKEISQRLHNVLRAEDMVADMSAQYEAMEAT 470

Query: 611 ---RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
              R+ G+ F I++   ++ + I+     +  ++  P  +      + AS+G A +    
Sbjct: 471 KMSRIGGDEFAIVVNHLHSPMDISHIVKRLLDAMQAPFQIESHSFLLGASVGIAVYPEDG 530

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
             + E+LK A++AMYH+K +G N  E F   ++    +R  I  D+  A++  +  L Y 
Sbjct: 531 KDAHELLKCADIAMYHSKRQGRNGFEYFDTKMNHMAVERHQIISDIRSALQKGQFELYYQ 590

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +  +   ++G EAL++W HP+ G +S  EF+ IAEE   I  I  ++LE   R    W
Sbjct: 591 PQVSALAGNVMGCEALLRWRHPERGFVSPVEFIPIAEETGQIIEIGRWVLEEACRQCREW 650

Query: 786 RDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           + Q     I + +NI++     + ++    +  ++ +   P  + L  +E+ +M + +  
Sbjct: 651 QAQGLDE-IRMSVNISAVQFSSSTDIVAVTREALAHSGLPPDCLDLEITETAMMQSDKVG 709

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSI 902
              L  L+ +G+S+++DDFGT  S L+ L  +P D +K + S +          AI+++I
Sbjct: 710 VDKLNALKNLGVSISMDDFGTGYSSLASLRDLPIDQLKIDKSFVDKINHDSQGRAIIKAI 769

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + +AK +   ++A+ +     +  L+   CD IQ  +VA PL  + +   L++   +  +
Sbjct: 770 LALAKELSIEVVAEGVEERTQLDFLSLHRCDLIQGYYVAKPLPADGMRDFLRQHTQVESS 829


>gi|75761278|ref|ZP_00741259.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218895603|ref|YP_002444014.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|228899232|ref|ZP_04063497.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
 gi|228963634|ref|ZP_04124782.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|74491237|gb|EAO54472.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218542358|gb|ACK94752.1| sensory box/GGDEF family protein [Bacillus cereus G9842]
 gi|228796054|gb|EEM43514.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228860411|gb|EEN04806.1| Sensory box/GGDEF [Bacillus thuringiensis IBL 4222]
          Length = 689

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 251/550 (45%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 LFKGALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L  S     +   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFLKES-----INFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A  + K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KECVEEIAKGILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AYLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|77361530|ref|YP_341105.1| sensory box protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76876441|emb|CAI87663.1| putative Sensory box protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1501

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/565 (22%), Positives = 251/565 (44%), Gaps = 16/565 (2%)

Query: 397  SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LP 454
             + +F +  R  + A   + D V+  D   +   +   + T     +      + N  + 
Sbjct: 938  REMVFEEHARLFAAAFEQTRDWVFILDKNFNIRASNKSLQTAFNFPAEPRSSRVLNLGIS 997

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                 D       L+            E  V   +N+   ++++I  ++++   +  Y+ 
Sbjct: 998  RSSRFDYLRIMQKLNV-----GEHFSCEDTVTLVNNEQRHVLVKISAVADNEHRLTSYVV 1052

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            I  DI  QK +   +   A  D LT +PNR  F DR+   ++ +    N +  ++ I+I 
Sbjct: 1053 ILTDINAQKLAENELHILANYDQLTSLPNRALFNDRVIHAIEQAQRH-NSKVALLHINIK 1111

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++K  ND LG  V D+++ ++  R+   L+  D +AR  G+ F +++       ++    
Sbjct: 1112 RFKHFNDSLGREVADELIKTVAERLKSTLRPSDSVARFGGDEFVVLVEDIQQIEEVLLVC 1171

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHV 692
              +   +   I L  + I +  SIG A++        ++LK A +A+YHAK    G    
Sbjct: 1172 TKLMGCVNKNIALNGQVININLSIGVATYPDDAQQYKDLLKAANIALYHAKDNLEGSYKF 1231

Query: 693  ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                ++      + ++  L  A +  E    Y PII    ++  G E L++W  PK   +
Sbjct: 1232 YKQEMNQRVQKALHLESQLTKAYQEHEFCNYYQPIISANSQKTEGFEVLLRW--PKNQLV 1289

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            ++ EF L AE + +I  I L  L R   ++++WR  A    +++ IN+++ D     L  
Sbjct: 1290 NTQEFSLAAESIGLITKIMLQTLGRALEELVAWRKIAPE--LYLSINLSALDFEFEHLVP 1347

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++  + K       I    +ES++M + +++   +  L+++G  L +DDFGT  + L+Y
Sbjct: 1348 EIKKALIKAAIPSKAIVFEITESILMRDSKQALSSMDMLKQLGCRLYMDDFGTGYASLTY 1407

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P D +K + S +          AI++S + +A ++    +A+ I     +  L  +
Sbjct: 1408 LKRFPIDVLKIDRSFVQDIGVDSNDEAIIQSTLTLAHSLNKECVAEGIESTHQLVFLKAL 1467

Query: 931  GCDYIQDSHVASPLGFNSILKLLKE 955
            GCDY Q    + P+  N+++ L+  
Sbjct: 1468 GCDYFQGYLFSKPVPTNAVIPLITR 1492



 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 5/175 (2%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
             R    ++  AL+   +++  ++    IQ +L      +       R  LA+ GS   V
Sbjct: 781 LWRAPYFVVLYALLLIALVVAWVMRRNKIQRIL--LAAHKESKESEARLKLALEGSESGV 838

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           WDW      +   P +   LG +   +   + ++L  IH  DR  FR     F+   +G 
Sbjct: 839 WDWQSSSLSIYQ-PRLINELGYSVECV--NLDDYLVKIHPQDRPLFRLEWLEFLSTDKGS 895

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               +R+R A   + W     + +   N    +  G   ++T +    E     A
Sbjct: 896 FNCTYRLRHAKGHWRWYKDFGKVVEWHNKLPQKVAGTYTNMTREMVFEEHARLFA 950


>gi|229095198|ref|ZP_04226190.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
 gi|228688057|gb|EEL41943.1| Sensory box/GGDEF [Bacillus cereus Rock3-29]
          Length = 689

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 116/550 (21%), Positives = 245/550 (44%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++                +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNNFIFNFII--KEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKEALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++N    ++ +D+D++  IND  G  
Sbjct: 265 MKTEYLAYYDQLTGLMNRISCTNKLNEFL-----NENKELALVFMDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A  + + I+    
Sbjct: 320 EGDKVLQKVTECLSNLEIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKNILEKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ SIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSVSIGIVMAPTDGADEKILFQRVDAALEKAKEKGKGHYHFYCKGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +++  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +  ++F+ +AE  
Sbjct: 439 FVMENQLHRAIEKNEFFLYYQPQVNIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ ++++++ + I  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVDQVCQQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L     + +Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVEIVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDVENM 686


>gi|148545617|ref|YP_001265719.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148509675|gb|ABQ76535.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida F1]
          Length = 926

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 146/581 (25%), Positives = 261/581 (44%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S       +         P    I   ++  + G     LP +
Sbjct: 365 RRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPAL 424

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 425 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 479

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+T+ K + + I   A+ DNLT + NR +F+  L       A D      ++++DID
Sbjct: 480 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESSMCLLLVDID 536

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L    ILAR + N F ++L    +       A
Sbjct: 537 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLL-DHTSLEDGQGVA 595

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I VTAS+G A      +  + ++KNA LA++ AK  G + V+ 
Sbjct: 596 QQLLCTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 655

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++GLEAL++W+HP+ G I
Sbjct: 656 FTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 715

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +    +     +A +  + + IN++ K   D +L  
Sbjct: 716 RPDQFISVAEETGLIIPIGKWVVRQAC-CMSQQLRKAGLGNLHVAINLSPKQFSDPDLVA 774

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859
            +  ++ +             E++                  E +   L  L+ +G++L 
Sbjct: 775 SISTILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 821

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  +++ MA N++  ++A+ 
Sbjct: 822 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 881

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+    + + LK R+P
Sbjct: 882 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 921


>gi|324324584|gb|ADY19844.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 689

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 247/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T+L     +DN    ++ ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNTLL-----NDNTEFALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   +  + K I+    
Sbjct: 320 EGDKVLQKVTECLSSFEIAGMHLFREHDDQFVMLIENIT-KERVEGVSKNILKRISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|254459349|ref|ZP_05072770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Campylobacterales bacterium GD 1]
 gi|207083962|gb|EDZ61253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Campylobacterales bacterium GD 1]
          Length = 899

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 139/598 (23%), Positives = 276/598 (46%), Gaps = 16/598 (2%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
            +    +   L  I I+    +   +       +    +      A   + + +   D+ 
Sbjct: 307 SLHSLYITIFLWSISIIALIFLTYILKRLITKEEKYIQELRIAGYAFD-AQEAMVITDLS 365

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              V        I    +    G     L   H+ND   ++ + +  +    G+ + E  
Sbjct: 366 GTIVKVNKAFTDITMYEASEAIGKNPKILKS-HLNDDKFYKAMWNEIIS--FGKWKGEIF 422

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            +  + + +  I+ I  + N +     YI    DIT  KK+ E     A  D LTG+ NR
Sbjct: 423 NKRKNGEIYPEILSITAIKNEDNKTTNYIAQFTDITSIKKAQEDAQYQANHDFLTGLLNR 482

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            S +++L      +    N     + IDID +KKIND  G  +GD ++V +++R+  +L+
Sbjct: 483 NSLIEKLHEEFIKAKRH-NFTHAFLYIDIDDFKKINDQYGHNIGDMLIVEVSQRLKHILR 541

Query: 605 FPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIG 659
             D++AR+SG+ FGI+L++ +         I      + KSI+    + E +I ++ SIG
Sbjct: 542 EDDVIARISGDEFGIMLLNFDKENSDIAKCIKGICTKILKSISESFLIYEHKIDISLSIG 601

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVEN 717
              +  ++    E++ +A+ AM  +K +G N    F  ++ +     + +++++  A++N
Sbjct: 602 IKLFPDNEELKDEVIIHADTAMNQSKAQGKNQYVFFDRQIDNELKKYIALEKEIKNALKN 661

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
           +E    + P + +  E+I G E LI+W HP  G +    F+ +A+E+ +I  I    L++
Sbjct: 662 NEFKFYFQPKVNVKTEKIDGAEILIRWLHPDKGLLYPGSFLDVAQEIGVIPDITSLALKK 721

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               + S  +  +     I INI+S++LL  +  E + + I      PS+I+L  +E+ +
Sbjct: 722 ACEFLKSSTEIFDGA---IAINISSEELLKADFEENIISTILHYKVDPSKIELEITENDI 778

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRI 896
           + + + + + +  L+K+G+  ++DDFGT  S ++YL  +P +T+K +       + +   
Sbjct: 779 IKDFDLAIIKIKNLQKLGVKFSIDDFGTGYSSITYLQKLPVNTLKIDKCFFDNLSLDSNK 838

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +++ +I MAK     II++ I     ++ +   G D  Q  + +  +   S   LLK
Sbjct: 839 ELVKIVINMAKTFNMNIISEGIESNEQLEFIKECGSDQYQGFYFSKAIDEESFNTLLK 896


>gi|158333716|ref|YP_001514888.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158303957|gb|ABW25574.1| diguanylate cyclase/phosphodiesterase, putative [Acaryochloris
           marina MBIC11017]
          Length = 886

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 126/454 (27%), Positives = 241/454 (53%), Gaps = 5/454 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  ++ E++++ E     A  D LTG PNR  F+++L   +  +         V+ ID
Sbjct: 431 LALTKEVAERQRAEEQFKHLALHDPLTGFPNRAFFMEQLERAVKQTQRHSQYLFAVLFID 490

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K +ND LG  VGD +L ++  ++  L++  DI+ARL G+ F I+L           
Sbjct: 491 LDRFKIVNDSLGHEVGDQLLGAIAHQLHSLVRATDIVARLGGDEFVILLEPIEEVNDAVR 550

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + + ++ PI+L  R++ ++AS+G A  +     ++++L++A++AMY AK+RG    
Sbjct: 551 VADRIVQELSAPIDLSNRQVFISASVGIALSSPDYSQATDILRDADIAMYRAKNRGKACF 610

Query: 693 ESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           E F         DR+ ++ DL  A+ N +L + Y PI+ +   ++ G EAL +W HP+ G
Sbjct: 611 EIFNERMYTQALDRLQLENDLRQAIANQQLQVFYQPIVNIQTGKLSGFEALGRWPHPQRG 670

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNE 809
            I  +EF+ IAEE  +I  +  ++L+   + + +W           I +N++ K L D  
Sbjct: 671 FIPPTEFIPIAEETGLIIPLGEWILQSACQQMATWLQTYPSAVKYTISVNMSIKQLKDPN 730

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +   + ++  +  ++ L  +ES++M N    +++L +L++ GI L++DDFGT  S 
Sbjct: 731 LLTKVDRALEQSGLNRHQLSLELTESILMENVIELKVILNQLKERGIQLSIDDFGTGYSS 790

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PF+T+K + S +T      +   I+ +II +A  +    I++ +  +  +  L
Sbjct: 791 LSYLHLFPFNTIKIDQSFITRIGAQGENQEIIETIINLASQLNMDAISEGVESKQQLNYL 850

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            ++ C   Q ++ + PL  ++    +     L++
Sbjct: 851 KKLLCQKAQGNYFSQPLSSDAAEVFILNNPQLIQ 884


>gi|118476237|ref|YP_893388.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
 gi|118415462|gb|ABK83881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus thuringiensis str. Al Hakam]
          Length = 689

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/549 (22%), Positives = 249/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   NG+I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSH 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|262401649|ref|ZP_06078215.1| hypothetical protein VOA_003199 [Vibrio sp. RC586]
 gi|262352066|gb|EEZ01196.1| hypothetical protein VOA_003199 [Vibrio sp. RC586]
          Length = 684

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG  +            
Sbjct: 125 LVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFENSQKLLGENFSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +V+        +  + + +      
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKVQLHAGSTLMLGNQSQLIL----- 237

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                    D  E  K+       +A  DNLTG+ NR  F  RL   +      +     
Sbjct: 238 -------LQDADEAPKQLSATTQVDAHIDNLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    IL  L G+ FG+IL    ++
Sbjct: 286 LLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAILGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSEEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   PS I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRATGVDPSCITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|26988492|ref|NP_743917.1| sensory box protein/GGDEF family protein [Pseudomonas putida
           KT2440]
 gi|24983256|gb|AAN67381.1|AE016364_6 sensory box protein/GGDEF family protein [Pseudomonas putida
           KT2440]
          Length = 973

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/625 (20%), Positives = 254/625 (40%), Gaps = 25/625 (4%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                   +++  L+  L+  + LI        + +     F+  +  + ER  + +   
Sbjct: 350 ALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 409

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTILD 469
           GD V   D+  +     P    +    SG   G   + L      +   + R     +L 
Sbjct: 410 GDAVITTDVEGNIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEHAEEDGRSLVEQVLS 469

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +       +   R+   D     + +   P+ N +G +   + + +D+T++++ +  +
Sbjct: 470 GSLKGGSEHARLIQRL---DGSTVSINLVGSPILN-DGQVSGIVLVLHDMTQERQYIANL 525

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR+ F  RL   L+  A     R ++M +D+D++K +ND  G A GD
Sbjct: 526 SWQATHDALTGLANRREFEYRLEQALNDLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 584

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
           ++L  +   +   L+  D LARL G+ FG++L +     +       +R+ +        
Sbjct: 585 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCP-PDQAERIGEQLRQMVQSLHFVWK 643

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704
            R    T SIG      +  T    L+ A++A Y AK +G N V+ +         R   
Sbjct: 644 GRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 703

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +   + L +A+E +   L    I  L   E    +E L++        I  S F+  AE 
Sbjct: 704 MAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAER 763

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822
             ++ A++ +++  +   I    ++    P+    IN++   + D++  E +Q L  +  
Sbjct: 764 YGLMTALDRWVVRNVFMVIRKCLEEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 823

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I    +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K
Sbjct: 824 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 883

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +          A++  I  +   +    IA+ +   +  + L  +G DY Q   +
Sbjct: 884 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 943

Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963
             P     +S+ +      PL++  
Sbjct: 944 ERPQVFTCDSLQRQRIAARPLLQRA 968


>gi|153870656|ref|ZP_02000010.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
 gi|152072877|gb|EDN69989.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
          Length = 439

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 232/439 (52%), Gaps = 7/439 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T +K++ + +   A+ D+LTG+PNR  F +R+   +  +  + ++   V+  D+D +K 
Sbjct: 1   MTARKQTEQRLAYLAYYDDLTGLPNRTLFYERVNRAIYHARQNLSM-VAVIFFDLDGFKY 59

Query: 579 INDVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +ND  G  +GD +L  + +R+ +  L   D +ARL G+ F ++L + N+   I  FA  +
Sbjct: 60  VNDTWGHPIGDLLLKKVAKRLMQCTLCQSDAMARLGGDDFTMVLENINSPKLIEQFAHNI 119

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +  P +L   E  +TASIG + + +       +LK A+ A+YHAK  G N+ + F  
Sbjct: 120 LEVVQPPFDLNGHETFITASIGISLYPNDGKEVDTLLKQADAALYHAKESGKNNYQFFTP 179

Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +R++++  L  A+E  E  L Y P + L   +I+G E L++W HP+ G +S  
Sbjct: 180 QMKKHAHNRLIMESKLRRALEREEFVLYYQPQMHLASGQIIGAEVLLRWQHPEMGLVSPY 239

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  I  ++L         W+   +   + + +N++S+    + L + + 
Sbjct: 240 RFIPLAEETGLIVPIGEWVLHHTCLQQQHWQCH-SQSKLRLSVNLSSRQFQQDNLIKTVV 298

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T    + + L  +ES+++ N + +  +L + +++GI L +DDFGT  S LSYL  
Sbjct: 299 RILDETCMDATLLTLELTESLLIQNIDITNKILHQFKEMGIQLAIDDFGTGYSSLSYLKR 358

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S +      +  + I ++II +A N++ T++A+ +  E  +  L  + CD
Sbjct: 359 FPIDKLKIDQSFVRDIPDNKDDVNITKAIIALAHNLQMTVVAEGVEKETQLILLKSLQCD 418

Query: 934 YIQDSHVASPLGFNSILKL 952
            IQ   ++ P+     L +
Sbjct: 419 EIQGYLISRPVPEEEFLNM 437


>gi|152986044|ref|YP_001350002.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7]
 gi|150961202|gb|ABR83227.1| hypothetical protein PSPA7_4658 [Pseudomonas aeruginosa PA7]
          Length = 818

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/585 (21%), Positives = 240/585 (41%), Gaps = 14/585 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 215 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTEGGISYLNPA 274

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 275 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 333

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+    G+I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 334 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 392

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+     +  R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 393 LQMALERLERSNG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 451

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 452 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 511

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 512 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 571

Query: 727 IIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           I+    D E   +E L++        +    F+  AE   ++  I+ +++E   R +   
Sbjct: 572 IVPLGEDGEGPHVELLLRLRDEDGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLAER 631

Query: 786 RDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            +  +  PI    IN++   + D    + +    ++    P  I    +E+V + N   +
Sbjct: 632 AEDPDAEPIGTCAINLSGATIGDESFLQFLNEQFARYRIPPQSICFEVTETVAVANLASA 691

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ I
Sbjct: 692 IRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQVI 751

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 752 NHIGHVMGKRTIAEFVETAEVMEALREIGIDYAQGLAIGAPLPFS 796


>gi|254519482|ref|ZP_05131538.1| diguanylate cyclase/phosphodiesterase [Clostridium sp. 7_2_43FAA]
 gi|226913231|gb|EEH98432.1| diguanylate cyclase/phosphodiesterase [Clostridium sp. 7_2_43FAA]
          Length = 578

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/525 (24%), Positives = 256/525 (48%), Gaps = 12/525 (2%)

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             I G     +      +  Y     R ++  IL+  +      +  E ++        W
Sbjct: 62  KEITGYKEDFIIMTFDEFRSYF----RQDYFDILNDGIKNNLEEI--EVKITNILGVDIW 115

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + ++ +   ++ G+ L + G  ++IT++K++   +   ++ D LTG+ NR+ F + +   
Sbjct: 116 ISVKGQARKSNKGEFLGFEGYVHNITKEKEAHLKLEYISYYDELTGLNNRKQFKNIIEKE 175

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L+     ++ R  +++IDID +K IND  G   GD +L   +  + ++     +L R  G
Sbjct: 176 LEKHIVSES-RGALIIIDIDNFKFINDSYGHKCGDILLEKFSEDLKKIFNDDQLLCRFGG 234

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I + S +   +I      +   +  P ++   +I  + SIG + +         +L
Sbjct: 235 DEFLIFISSISYLNEINTTVRKIMDILKNPYDINGHKIYSSTSIGVSVFPDDGEDFEVLL 294

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMD 732
           KNA+ AMY AK  G N  + F  +  R       I+  L  A++N E+++V+ P +RL D
Sbjct: 295 KNADAAMYIAKSNGKNQWQMFNNNISREINRIYSIQRGLRTALDNDEMFVVFQPKVRLTD 354

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +E+ G EAL++W   + G +S  EF+ +AE   +I  I  F+L  +   +     +    
Sbjct: 355 DEVNGFEALLRWKSNEIGFVSPGEFIPVAENTRLIIPIGKFVLREVFAKVKYLLSEGYD- 413

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N++   L D  L E   +LI +   SP  I++  +ES++M + +++   L +++
Sbjct: 414 NFKIAVNLSEIQLRDGNLLEYFNSLIEEFNVSPKYIEVEITESMIMKSVDKNIECLLQIK 473

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
           ++G S+ LDDFGT  S L++L  +P D +K + S +    E   +  I+ +II ++  + 
Sbjct: 474 ELGASIALDDFGTGYSSLNHLTKLPIDVLKIDRSFVIDMAENDKSRYIVENIIQLSHKLG 533

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            T++A+ +  +  +  L  + CD +Q  + + P  F +I+ +L +
Sbjct: 534 MTVVAEGVEEKEQVDYLRSIECDTVQGFYYSKPEYFENIISMLSK 578


>gi|47567108|ref|ZP_00237824.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241]
 gi|47556164|gb|EAL14499.1| sensory box protein/GGDEF domain protein [Bacillus cereus G9241]
          Length = 689

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 118/549 (21%), Positives = 242/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+   + +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYKKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKRSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNDFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   A +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGMHLFREHDDQFVMLIENIT-KERVEVVAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + E ++ ++ASIG             + +  + A+  AK +G  H   +           
Sbjct: 379 IEEEDVYLSASIGIVMAPRDGEDEKILFQRVDAALEKAKDKGKGHYHFYCSGLDSEREQR 438

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +  ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLHYQPQINIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +   +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLGLNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|307304289|ref|ZP_07584041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|306902757|gb|EFN33350.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 772

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 223/441 (50%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ + I   A  D LTG+PNR  F +++  +L+     D     +  +D+D +K IN
Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQW-AVLAFLDLDDFKLIN 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
           D LG A GD++L  +  R+   ++  D + R+ G+ F I+L         +      +R 
Sbjct: 391 DSLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRT 450

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +IAMP+ L  R + V+ S+G A + +   T+ E+L NA++AMY AK  G N+++ F    
Sbjct: 451 AIAMPVQLQGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEEM 510

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +++  +E+L  A+   E  L + P + L    I   EAL++W HP  G IS + F
Sbjct: 511 AARAHEKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAF 570

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  ++L    R + +W+D    PP+ + +N++++   +      + A+
Sbjct: 571 IPLAEETGLIVPIGDWVLRTACRQLKAWQDAGL-PPLIVSVNVSARQFRERNWAARVAAV 629

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T      ++L  +ES++M +   +   +  L  IG+ L +DDFGT  S LS L   P
Sbjct: 630 LEETCLEARYLELELTESLIMQDVPGAIATMQALEAIGVHLAIDDFGTGYSSLSALKRFP 689

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +T        +AI  +II +A+ +   +IA+ +  E  ++ L + GC  I
Sbjct: 690 VRRLKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEI 749

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL       LL   
Sbjct: 750 QGYFFSQPLPGEDFEVLLSSE 770



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 456 IHI-NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           +H               +         E R +   D    W++    P+ + +G I+  +
Sbjct: 100 LHPHEFAQAVADTERRVLETGEPIFGIEERAIVTKDRD-RWLMTSKVPLRSKSGRIIGIV 158

Query: 514 GIANDITEQKKSLEGILCNAF 534
           GI+ DI+++K +   +   A 
Sbjct: 159 GISRDISDRKAAERLLEGQAR 179


>gi|229108154|ref|ZP_04237777.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
 gi|228675284|gb|EEL30505.1| Sensory box/GGDEF [Bacillus cereus Rock1-15]
          Length = 689

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|323488321|ref|ZP_08093569.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323397979|gb|EGA90777.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 758

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 228/437 (52%), Gaps = 6/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +K +  +   A+ D L+G+PNR+ FL++L   +  +      +  V+ ID+D++K +N
Sbjct: 313 QLEKVIRKMEELAYYDVLSGLPNRRLFLEKLEDSIRDAKQHSE-KVAVVFIDLDRFKNVN 371

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L   + +I E L+  D+++R  G+ F IIL +  +   I+     ++ +
Sbjct: 372 DSFGHEFGDLLLQGFSEKIKENLRSDDVISRQGGDEFTIILNNIYDEHDISPLIQRLQTA 431

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P+ +  +E+ ++ SIG A +     T+ E+LK+A+ AMY AK +G N+ + F     
Sbjct: 432 LAKPMMINGQELHISMSIGIAVYPKDGETTGELLKHADSAMYSAKAKGKNNFQFFSDDMA 491

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S ++ ++ ++  A+ N E  L Y P I++   +I+G+EALI+W       +S  EF+
Sbjct: 492 LIASRKIALENEMRRAITNKEFMLYYQPQIQVETGDIIGMEALIRWQTAGGDVVSPGEFI 551

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++L         W D      + I +N++    L ++L + ++  +
Sbjct: 552 PLAEETRLILPIGEWVLYSACEQAKKWHDA-GHSHLKIAVNLSPLQFLHDDLMDVVKFTL 610

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            KT +  S ++L  +E V + + E +   +  LR+IG+ + +DDFGT  S L+YL   P 
Sbjct: 611 RKTGFPASSLELEITEGVAVDDAEIAMARMRELREIGVRIAIDDFGTGYSSLNYLKQFPL 670

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K     +          A++ +++ +A ++  ++IA+ +  +  +  L  +GCD IQ
Sbjct: 671 NNLKIAQPFVQDMANNPYDKALVEAMVFIAHSLNMSVIAEGVETDEQLALLKELGCDEIQ 730

Query: 937 DSHVASPLGFNSILKLL 953
               + PL      +L+
Sbjct: 731 GYLYSKPLSAAQFTELI 747


>gi|285018220|ref|YP_003375931.1| hypothetical protein XALc_1436 [Xanthomonas albilineans GPE PC73]
 gi|283473438|emb|CBA15943.1| hypothetical protein XALc_1436 [Xanthomonas albilineans]
          Length = 943

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 136/542 (25%), Positives = 241/542 (44%), Gaps = 10/542 (1%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           + ++   R+  T +   I GL   ++   +   L     + RD F   L   V       
Sbjct: 393 EIEVSTRRMQWTEECYRIHGLRKETIE--LDQALSLYTQDSRDAFEAALARIVEGSLPE- 449

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q +        Q  W+ + I  +   +G   R++ +  DIT ++++ E I   A  D LT
Sbjct: 450 QLDLCFHRPSGQRIWVQVLIE-LDERDGLPPRFVVLFRDITHEREANERIELLAHYDLLT 508

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNRQ   ++    +  +    +    ++ +++D +K IND  G A GD +L     R+
Sbjct: 509 GLPNRQLLREQSEKAMHDAIERGST-LAMLFVNLDGFKSINDSFGHAAGDALLKLAASRM 567

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            + L+  D+LARLSG+ F ++L            A  +  ++A P+   E  I + ASIG
Sbjct: 568 HQQLRTSDLLARLSGDEFVLVLRDLAEPGDAGHVARKLITALAEPLPNGENVIKIGASIG 627

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717
            A     +     +L+ A+ AMY AK  G N    +          R+ I+  L  A++ 
Sbjct: 628 IALMEEGRQDFDSLLRAADAAMYAAKESGRNACHYYSQDVLLRAQRRLEIEHALHGALDR 687

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  LVY P++  ++     +EAL++W  P  G+ + +EF+ IAEE   I  +  +++  
Sbjct: 688 EEFSLVYQPLVHTVEGHPPAIEALLRWYRPGHGHCNPAEFIPIAEECGEIVRLGDWVISE 747

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R   +W +        I +N+++  L D    E +  L  +  +SP R++L  +ES +
Sbjct: 748 ACRQAAAWHEAGLSFD-RISVNVSAMQLRDRGFAERVIELCQRNGWSPKRLELELTESAL 806

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895
           + + E  R       + GI L +DDFGT  S L YL   P   +K + S +         
Sbjct: 807 IRDSESLRRCFELFEQEGILLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQDMLHDSGT 866

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + ++I+ +   +   ++A+ +    + + L   GCD IQ    + PL    +   L+ 
Sbjct: 867 AKVTQAIVQLGHALGMQVVAEGVETVQEDELLREQGCDEIQGYLHSRPLPPRELAAWLRA 926

Query: 956 RF 957
           R 
Sbjct: 927 RQ 928



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  +A+  +   +WDWDI  D++  +     +LG A  +        LP +H  D++  +
Sbjct: 122 RWEIALDSADHGLWDWDIPSDKIFRSERWKQMLGYAGDAPVHGFNGLLPLVHGQDKERLQ 181

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + +    R      EFR+R  D Q+HW++ R R +   ++G  LR +G   DI EQK 
Sbjct: 182 QAIRAHFEGRTATYMCEFRLRGQDGQWHWILDRGRIVARTADGRPLRMVGTHTDIHEQKL 241

Query: 525 SLEGILCN 532
             + +L  
Sbjct: 242 LEQRLLDQ 249



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +         A   +G   W WD   D+   + +   + GL         R WL  
Sbjct: 242 LEQRLLDQQTLLREAQRMTGMGSWSWDPRHDQFWCSHEFQRVTGLN-EQQVPNSRGWLRL 300

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +  +      +I    +  ++  + ++  +         + +  +P    +G I R +G 
Sbjct: 301 LSRDSSAQLVSIWRRMLSDKK-PVNFDVELPFGSQAPLHLRVWAQPQLEGDGTIQRVLGQ 359

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             +ITEQ+++   I         T + NR
Sbjct: 360 VQNITEQRQTDALIRWR------TELLNR 382


>gi|254414802|ref|ZP_05028566.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196178291|gb|EDX73291.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 884

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 147/554 (26%), Positives = 265/554 (47%), Gaps = 40/554 (7%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YR 475
           + + D+        P+   +L      +           H      F   + S +    +
Sbjct: 323 IVEIDLAGRVRYLNPEAMRLL---PELLDSEAE------HP-----FLAEMPSMIRLMQQ 368

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           +  L+ E ++     +  +       + +   +I      A DIT++K++ E +L NAF 
Sbjct: 369 QSSLRREVKI----GEIVYEQ-----VLHYVPEIECIRIYALDITDRKRAEELLLFNAFY 419

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDN-------LRPTVMVIDIDKYKKINDVLGIAVG 588
           D LTG+ NR  F+DRL      +             R  V++++++++K +N+ LG  +G
Sbjct: 420 DRLTGLANRALFMDRLQQAGRRAQPSQGENRDSPSYRFAVVLLNLNRFKVVNESLGNHLG 479

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VL    +R+   L+  D +ARL G+ F I+L            A A+ +++ +P NL 
Sbjct: 480 DQVLQEFGQRLQNCLRPTDTVARLGGDEFAILLEGIQGVCDAIQVADAIEQTLTLPFNLE 539

Query: 649 EREITVTASIGFASWTSSKI---TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703
            R++ +T SIG A  T+      ++  +L+NA  AM+ A+ +G      F         D
Sbjct: 540 GRDVFMTTSIGIALNTNRDRQVLSAENILRNANTAMHRARSQGKPGYAIFDNQMLSPTVD 599

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++ D+  A+E  E  + Y PI+ L+  +I G EAL++W HP+ G +  +EF+ IAEE
Sbjct: 600 RLQLETDMRRAIERQEFQVHYQPIVSLLTHQITGFEALLRWQHPQRGLVFPAEFIPIAEE 659

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTL 822
             +I  +  ++L    R +  W+ Q   P P+ + +N++ K     +L   +  ++ +T 
Sbjct: 660 TGLIIPMGWWILREACRQLSIWQQQFQSPQPLTMNVNLSCKQFTQPDLLAQIDQILEETN 719

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +   +KL  +ESVV+ NPE  + LL  L+K  I L +DDFGT  S LS L   P  T+K
Sbjct: 720 IAVGSLKLEITESVVIDNPELVKDLLLELKKRQIHLCIDDFGTGYSSLSRLHNFPISTLK 779

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S ++      +   I+++II +A+ +   ++A+ I     +  L  + C Y Q    
Sbjct: 780 IDRSFISRIGALGENSEIVQAIITLARTMSMDVVAEGIELLEQVSPLVALQCHYGQGFLF 839

Query: 941 ASPLGFNSILKLLK 954
           + P+  +  +KLL+
Sbjct: 840 SKPVDSDGAIKLLR 853



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 5/156 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           V+     ++ +    E     V   G      D         P +   LG     + G  
Sbjct: 169 VMERQQLTEQLHQQQEFNQNLVETHGGFFVAIDPQGKTRMMNPRLLETLGYTLDEVRGT- 227

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNG 507
                +I   DR  F  ++ +       +     +  V   + Q  W+  R + +   +G
Sbjct: 228 DFVTKFIRDVDRKPFAKLIKTREEKSELKSPTVHQTGVLTKEGQELWVEWRSQQVFKKSG 287

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           ++     I  D  E   + +     A    LT  PN
Sbjct: 288 ELDFLFAIGRDQNEHCLTHQETARLASFPLLT--PN 321


>gi|192293007|ref|YP_001993612.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192286756|gb|ACF03137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 876

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 259/568 (45%), Gaps = 33/568 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +L V  + D  +        +          GL +G +                      
Sbjct: 326 ALTVQNTADGRYMLANRGAEIILNRRREDATGLTTGEIFNAKE-----------ARLIAE 374

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            D     + G +  E  +  A       + R   +++        I    D+T+++++  
Sbjct: 375 RDELAIRKGGLVVEEHPISTA-GGLRLFVTRRMTVTDEADQAHYLIKTHVDVTDRRQTEA 433

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT +PNR +FL  LT +++ +  +      V+ +D+D  K+INDV G A+
Sbjct: 434 RMAHMAYHDGLTDLPNRDAFLKSLTQMIE-ACDNAVDEFAVLSVDLDGLKEINDVFGHAI 492

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L+ + RRI E      ++ARLSG+ FG+I+          D A  + K++A    +
Sbjct: 493 GDKLLIEVARRI-EWASRGGVVARLSGDEFGLIIDGPQ-PAAARDLASMVAKALAPGFVI 550

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705
             + + +  + G A + ++   ++ +L NA  A++ AK   RG   V    +     DR 
Sbjct: 551 DGKTVRIGVTTGVALFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRR 610

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLM----DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++ +DL  A+ N E+ L Y P         + +IVG EAL +W HP  G +  SEF+ +A
Sbjct: 611 VLHQDLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPSEFIPLA 670

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  ++L    R   SW       P+ + +N++    L+ +L   +  ++ +T
Sbjct: 671 EESGLIVELGEWILREACRQAASWAR-----PLQVAVNLSPAQFLNTDLVAFVHEVLLQT 725

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +E V++ + +R   LL RL+ +G+ +++DDFG+  S L+YL   PFD +
Sbjct: 726 GLEPGRLELEITEGVLIEDFDRGLSLLRRLKALGVRVSMDDFGSGYSSLTYLQAFPFDKI 785

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +  AI+R++I +   +  T++A+ +  +  +  L    CD +Q   
Sbjct: 786 KIDRAFIMNLGRNPQSAAIVRAVIGLGHGLGVTLVAEGVETQDQLDFLVDESCDAVQGYL 845

Query: 940 VASPLGFNSILKL-----LKERFPLVKN 962
           +  P   +    L     L++R P    
Sbjct: 846 IGKPAPIDQYRWLVGLDALEDRAPARAR 873



 Score = 40.3 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 6/136 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIR 450
                S+ + +  +     +      V    I     +       T+ GL+   + G   
Sbjct: 174 ELRRMSKELSTTKQFLESVIDNIPVCVAAKSIEDGRYILANRAFETLSGLSRDKIIGATA 233

Query: 451 NWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                ++      + R    S +    G  Q E  V            R+    N +G+ 
Sbjct: 234 ---DQLYPARSAASIREADQSALQSITGAFQSELTVELGRGDRILASNRVVA-RNEHGEP 289

Query: 510 LRYIGIANDITEQKKS 525
              I +  D+T ++  
Sbjct: 290 EFLIALFEDVTNRRAL 305


>gi|228937784|ref|ZP_04100415.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970665|ref|ZP_04131309.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977243|ref|ZP_04137640.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228782462|gb|EEM30643.1| Sensory box/GGDEF [Bacillus thuringiensis Bt407]
 gi|228789058|gb|EEM36993.1| Sensory box/GGDEF [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821890|gb|EEM67887.1| Sensory box/GGDEF [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938266|gb|AEA14162.1| sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 689

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 121/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYIHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNTFL-----NESINFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KECVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AYLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNVIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|229028342|ref|ZP_04184471.1| Sensory box/GGDEF [Bacillus cereus AH1271]
 gi|228732972|gb|EEL83825.1| Sensory box/GGDEF [Bacillus cereus AH1271]
          Length = 689

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 120/549 (21%), Positives = 245/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +         ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHEAGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNVFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  +      L R   ++F +++ +      +   A ++ K I+    
Sbjct: 320 EGDKVLQKVTECLSSIQIGGMHLFREHDDQFVMLIENIT-KECVEVVAKSILKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYYFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL  + +  
Sbjct: 677 PLSKDDVEN 685


>gi|78778197|ref|YP_394512.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498737|gb|ABB45277.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 770

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 236/444 (53%), Gaps = 10/444 (2%)

Query: 517 NDITEQKK---SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +I  QKK   +   +   +  D+LT +PN+   +DRL   +++++ +   + +++ +D+
Sbjct: 326 RNINLQKKVQTAANELEHLSRHDHLTNLPNKTLLIDRLEHSINVASKNGQ-KVSILFLDL 384

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K+IND     VGD +L  ++RR+ +L+K  D + R  G+ F IIL + N +  +   
Sbjct: 385 DRFKEINDTYNHEVGDKLLQDISRRLKKLIKEEDTIGRFGGDEFIIILNNSNETQTVEVV 444

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +  +++ P N+ + ++  T SIG + +     +   +++NA+ AMY AK  G N  +
Sbjct: 445 TN-IMSAMSEPFNVNKVKLHTTFSIGISIFPDDGNSRDILIRNADTAMYEAKSNGKNRYQ 503

Query: 694 SFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +         +R  ++ +L  A++N E  + + P I    ++++GLEALI+W+HP+ G 
Sbjct: 504 FYDKKMTELAFERTTLESNLRKAIQNEEFEVYFQPKIDARVDKVIGLEALIRWNHPELGL 563

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   +F+  AE + +I  I+ +M+   A  ++ W+ +  +    + IN+++K L D+   
Sbjct: 564 IPPVKFIPFAENIGLIIEIDRWMMREAAAQVLLWKKENIVCG-KLSINVSAKQLEDDNYV 622

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +   I+     P  +++  +E ++M +       L  +R++GIS+++DDFGT  S LS
Sbjct: 623 EFLSQKINDIGIDPKDLEIEITEGLIMKHSLHVTSTLNAIRELGISISVDDFGTGYSSLS 682

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +  IAI+++II +A N+   +IA+ +  +     L  
Sbjct: 683 YLKRLPIDKLKIDRSFVKDLPHDKDDIAIVKTIIALANNLSLELIAEGVETKEQRDFLLS 742

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
            GC  IQ    + PL  N   + L
Sbjct: 743 EGCHNIQGYFYSKPLKVNECREFL 766


>gi|146283460|ref|YP_001173613.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145571665|gb|ABP80771.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 660

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 216/451 (47%), Gaps = 5/451 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I +++  ++++   +      D+LTG+PNRQ    +L  ILD +      R  V+ + +
Sbjct: 205 SIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQSQLDHILDEARRLQR-RVAVLCLGL 263

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L  L  R+ E       LARL G++F ++L       + A+ 
Sbjct: 264 DDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEAAEL 323

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A A+   +  PI+L    I + A+IG   +      + ++L+ AE  M  AK R  N  +
Sbjct: 324 AQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQ 383

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +   + S    R  +++DL  A++ +E +LVY P +      I G+EALI+W HP+   
Sbjct: 384 FYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKL 443

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+   I  I  ++L++    +  W  Q     + + +N+++  L   +L 
Sbjct: 444 VPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ-GHTGLRVAVNLSTVQLRHPQLP 502

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+         ++L  +E+ +M + + +   L  LR+ G  + +DDFGT  S LS
Sbjct: 503 AMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSSLS 562

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           YL  +P D +K + S +    +     I+R+II + K++  T+IA+ +        L   
Sbjct: 563 YLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAE 622

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           GC   Q  + + PL    +  LL++  P  +
Sbjct: 623 GCQEGQGYYYSKPLPARDLDLLLRQSAPFDR 653


>gi|296501307|ref|YP_003663007.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
 gi|296322359|gb|ADH05287.1| sensory box/GGDEF family protein [Bacillus thuringiensis BMB171]
          Length = 689

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|261417194|ref|YP_003250877.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373650|gb|ACX76395.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327316|gb|ADL26517.1| sensory box/GGDEF domain/EAL domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 667

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 144/644 (22%), Positives = 285/644 (44%), Gaps = 25/644 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT---- 393
              +     +F   I   +  T+ + N I     +  L  + +   F +    +      
Sbjct: 11  RFALLLACFLFAESIPDILNFTEHVYNFIPYFLAIVFLAYVALFYKFPMDGRKIRNDVEI 70

Query: 394 ---------GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                        + +    E   + +  S D  W +D+   +V  +  IA +L   S S
Sbjct: 71  PEPKVVEPIRDLRKDLLEKDEMFQMMIDVSSDGFWTFDVASGKVYWSNRIAKLLATDSAS 130

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +          +  +D + FR  L++ +    G       +  A  +   ++I  R  SN
Sbjct: 131 LEDSFEPLKKRVIESDWNAFREQLNAAL-QTSGTFSCTLTLLDASKKNMKLVISGRVQSN 189

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G  +R IG   +  ++K          +QD LTG+ NR+ FL++L T +D++A   + 
Sbjct: 190 NLGRPIRVIGSLTEALDRKSVEREHYNYVYQDALTGVYNRKYFLEKLKTDVDIAAKRPDY 249

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V ++DID +  IN    I +GD+VL ++  R+  + +  D +AR+  + F +IL + 
Sbjct: 250 VFAVALLDIDSFGAINASYSIKIGDNVLRTIADRLKSIARPDDCVARIGPDVFAVILHNI 309

Query: 625 NNSL---KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +      +      +   +  PI+L  +++ ++ S+             ++L NA  ++
Sbjct: 310 QSRDPNDDLIPLVRNIHNKVKSPISLEGKDLYISVSMSIVV-NQDVDCVEDILANANASL 368

Query: 682 YHAKH---RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVG 737
              K     GG    S  +         ++ ++  A++  E  L+Y PI+ +    +IVG
Sbjct: 369 RDMKKGINHGGIQFFSGGIREKAMKLYKLEFEIRRAIQAQEFVLMYQPIVDIQAGNKIVG 428

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+  + G IS +EF+ IAEE  +I  +   +L    +    W D      I + 
Sbjct: 429 FEALVRWNQSERGIISPAEFIPIAEETGLIVPMGALILRMACKQTKQWVDM-GYKDIQVA 487

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N ++K    + + + ++ ++++T  +P  +KL  +E   M   +++  ++  L  +GI 
Sbjct: 488 VNFSAKQFSMDSMVDDVRRVLTETNLNPRNLKLEITEYTAMCEADKTIEIMRALSNMGIQ 547

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIA 915
           +++DDFGT  S LSYL   P  T+K +   +      E+  +  R +I +AK++   +IA
Sbjct: 548 ISIDDFGTGYSSLSYLKRYPVHTLKMDKYFVDHVADNEEDASFARMVIGIAKSLNLDLIA 607

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           + +  +  +  L R GC  IQ  + + PL  +  L+ +KE + +
Sbjct: 608 EGVETKEQLDFLYREGCHLIQGFYFSRPLNTDMALEYMKEHYNV 651


>gi|316935682|ref|YP_004110664.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315603396|gb|ADU45931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 875

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 134/554 (24%), Positives = 254/554 (45%), Gaps = 29/554 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +L V  + D  +        +          GL +  +                      
Sbjct: 325 ALTVQNTADGRYVLANRGAEIIFNRRREDATGLTTAEIFNTKE-----------ARLIAE 373

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            D     + G +  E  +  A       + R   +++        I    D+T+++++  
Sbjct: 374 RDELAIRKGGLVVEEHPISTA-GGLRLFVTRRMTVTDEADQAHYLIKTHVDVTDRRQTEA 432

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT +PNR +FL  LT +++ +  +      V+ +D+D  K+INDV G A+
Sbjct: 433 RMAHMAYHDGLTDLPNRDAFLKSLTQMIE-ACDNAVDEFAVLSVDLDGLKEINDVFGHAI 491

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LV + RRI E      ++ARLSG+ FG+I+       +  + A  + K++     +
Sbjct: 492 GDKLLVEVARRI-EWAARGGVVARLSGDEFGLIIDGPQ-PAEARELASMVAKALVPGFVI 549

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705
             + + +  + G A + ++   ++ +L NA  A++ AK   RG   V    +     DR 
Sbjct: 550 DGKTVRIGVTTGIALFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRR 609

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLM----DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++ +DL  A+ N E+ L Y P         + +IVG EAL +W HP  G +  SEF+ +A
Sbjct: 610 VLHQDLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPSEFIPLA 669

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  ++L    R   SW       P+ + +N++    L+ +L   +  ++ +T
Sbjct: 670 EESGLIVELGEWILREACRQAASWAR-----PLQVAVNLSPAQFLNTDLVAFVHGVLLQT 724

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +E V++ + +R   LL RL+ +G+ +++DDFG+  S L+YL   PFD +
Sbjct: 725 GLEPGRLELEITEGVLIDDFDRGLSLLRRLKALGVRVSMDDFGSGYSSLTYLQAFPFDKI 784

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +  AI+R++I +   +  T++A+ +  +  +  L    CD +Q   
Sbjct: 785 KIDRAFIMNLGRNPQSAAIVRAVIGLGHGLGVTLVAEGVETQDQLDFLVDEACDAVQGYL 844

Query: 940 VASPLGFNSILKLL 953
           +  P   +   + L
Sbjct: 845 IGKPAPIDQY-RWL 857



 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 4/140 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIR 450
                ++ + +  +     +      V    I     +       T+ GL+   + G   
Sbjct: 173 ELRRVTRELSTTKQFLESVIDNIPVCVAAKTIDDGRYILANRAFETLSGLSRDRIIGSTA 232

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +           N R    S +    G    E  V     +      R+    N  G+  
Sbjct: 233 D--DLYPPRSAANIREADRSALKSSAGSDTSELTVEIGQGERVLASNRVVA-RNERGEPE 289

Query: 511 RYIGIANDITEQKKSLEGIL 530
             I +  D+T ++     + 
Sbjct: 290 FLIALFEDVTNRRALSIELE 309


>gi|196041290|ref|ZP_03108584.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
 gi|196027775|gb|EDX66388.1| sensory box/GGDEF family protein [Bacillus cereus NVH0597-99]
          Length = 689

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 248/549 (45%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRFEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   N +I+    +  D+T+Q  + 
Sbjct: 207 IFKEAMQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNDEIVGVYIVTRDVTKQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNDFL-----NEKVAFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++  FA +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPDMHLFREHDDQFVMLIENIT-KERVEVFAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYGNGLDCEREKR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K   S
Sbjct: 499 GFIIKLDEWVINEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|94498467|ref|ZP_01305024.1| sensory box/GGDEF family protein [Sphingomonas sp. SKA58]
 gi|94422115|gb|EAT07159.1| sensory box/GGDEF family protein [Sphingomonas sp. SKA58]
          Length = 821

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 131/581 (22%), Positives = 250/581 (43%), Gaps = 15/581 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++ V         +    ER  LA+  +G  +WD+D    + + +P++  +LG++  
Sbjct: 246 YGSLEDVHERHMAEHDLAQSEERFRLAIQSAGLGIWDFDSRTGQRSWSPELRAMLGVSPD 305

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRV-RAADNQFHWMIIRI-R 500
            +       L  +H +DR   +  L +  G       +   R+ RA D    W+      
Sbjct: 306 -VTPTTELALSLVHPDDRPRLQDKLAAVAGGGLPAHFEDMLRIYRATDGALRWIKSTGWT 364

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              +++G + R I    D+TEQ+ S   I   A  D +T +PNR S+   L   +  +A 
Sbjct: 365 TRCDTDGSV-RIIITFLDVTEQQDSERRIRWAATHDAMTRLPNRSSWQQTLDD-MAKAAR 422

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++++DID  K+ ND LG   GD +L +   R+        ++ RL G+ FG++
Sbjct: 423 RSGDSFALLLMDIDDLKRTNDSLGHDAGDALLCAFAERLQAAAPPDAVIGRLGGDEFGLL 482

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAEL 679
             + +++ +   +  A+ +++  P     R +    S+G A +         E+ K A+L
Sbjct: 483 SSTLSDATRAEAWGKALIETLRRPHMHEGRSLDCGVSMGAALFGGDAGSEGDELFKAADL 542

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y +K  G   +  F  S     +    +       + +  +   Y P I L    + G
Sbjct: 543 ALYTSKAAGRGRLTLFHSSLRAEAQQRSSMIRMARQIIADDLIMPYYQPKIDLRTRMVTG 602

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMI-KAINLFMLERIARDIISWRDQANMPPIFI 796
            EAL++W HP+ G       +  A +   I   +   ML+++ RDII W D    P   +
Sbjct: 603 YEALLRWCHPRLGVQLPGS-IAAAFDHGEIAVGLTQTMLDKLLRDIIRWLDAGLDPG-SV 660

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIG 855
             N ++ D       + +   +         ++L  +E+V +G   ++    L    K G
Sbjct: 661 AFNASAADFTHAGFADSVLERLRLANIPTRHLELEVTETVFLGRGADQVATALRCFAKEG 720

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           + + LDDFGT  + LS+L + P D +K + S ++         AI+ +I+ +  +    +
Sbjct: 721 VRVALDDFGTGYASLSHLKHYPVDVLKIDRSFVSNMDNDAGDAAIVDAIVKLGDSFGMEV 780

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +A+ +  E+  + L   GC   Q  H+  P  F+ +   ++
Sbjct: 781 VAEGVETELQAQLLLAHGCPIGQGFHLGRPQPFDVVTAKMR 821



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 13/153 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               Q        +     D  R S+A+  S  + W            P  A I G++  
Sbjct: 122 VADAQPYHELLSAAVAESRDHYRWSVAL--SPQVPWTAGPDGAIEEVGPRFAEITGISKD 179

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    W   +H  D      I D  +      +  E+RVR     + WM        
Sbjct: 180 EALGQ--GWATVLHPEDETRVLGIWDRHLAN-GEPVDIEYRVRLRSGHYRWMRACAAARR 236

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           +++G I+R+ G   D+ E+          A  D
Sbjct: 237 DADGRIIRWYGSLEDVHER--------HMAEHD 261


>gi|15964712|ref|NP_385065.1| hypothetical protein SMc00038 [Sinorhizobium meliloti 1021]
 gi|15073890|emb|CAC45531.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 772

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 223/441 (50%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ + I   A  D LTG+PNR  F +++  +L+     D     +  +D+D +K IN
Sbjct: 332 ERKRAEDRIGFMAHHDALTGLPNRVLFEEQVAGMLEEIRERDQW-AVLAFLDLDDFKLIN 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
           D LG A GD++L  +  R+   ++  D + R+ G+ F I+L         +      +R 
Sbjct: 391 DSLGHATGDELLKIVAGRMRAAVRRSDSVVRVGGDEFIILLNGLPKERDVVLSRLEDIRT 450

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +IAMP+ L  R + V+ S+G A + +   T+ E+L NA++AMY AK  G N+++ F    
Sbjct: 451 AIAMPVQLQGRSLQVSCSMGVACFPNQGKTAGELLANADMAMYRAKELGRNNIQVFTEEM 510

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +++  +E+L  A+   E  L + P + L    I   EAL++W HP  G IS + F
Sbjct: 511 AARAHEKLQSQEELREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAF 570

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  ++L    R + +W+D    PP+ + +N++++   +      + A+
Sbjct: 571 IPLAEETGLIVPIGDWVLRTACRQLKAWQDAGL-PPLIVSVNVSARQFRERNWAARVAAV 629

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T      ++L  +ES++M +   +   +  L  IG+ L +DDFGT  S LS L   P
Sbjct: 630 LEETCLEARYLELELTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFP 689

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +T        +AI  +II +A+ +   +IA+ +  E  ++ L + GC  I
Sbjct: 690 VRRLKIDRSFVTDIPHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEI 749

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL       LL   
Sbjct: 750 QGYFFSQPLPGEDFEVLLSSE 770



 Score = 47.3 bits (111), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 456 IHI-NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           +H               +         E R +   D    W++    P+ + +G I+  +
Sbjct: 100 LHPHEFAQAVADTERRVLETGEPIFGIEERAIVTKDRD-RWLMTSKVPLRSKSGRIIGIV 158

Query: 514 GIANDITEQKKSLEGILCNAF 534
           GI+ DI+++K +   +   A 
Sbjct: 159 GISRDISDRKAAERLLEGQAR 179


>gi|213158060|ref|YP_002320111.1| sensory box protein [Acinetobacter baumannii AB0057]
 gi|213057220|gb|ACJ42122.1| sensory box protein [Acinetobacter baumannii AB0057]
          Length = 878

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 304 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 362

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 363 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 418

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 419 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 478

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 479 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 537

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 538 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 597

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 598 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 657

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 658 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 716

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 717 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 776

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 777 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 836

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 837 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 873



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278
           +    +       + I+   L   +      +        + ++S+ II L       R+
Sbjct: 18  LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 77

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                   +       +   +  +       +      ++    T    Y   + Y++  
Sbjct: 78  F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 130

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L+                +     +      L   L   V        Q         Q
Sbjct: 131 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 180

Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +           ER        + A   +G   WDWDI + ++       T       +
Sbjct: 181 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 235

Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + P+  ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +
Sbjct: 236 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 295

Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533
           S        LR +G+  DI ++KK  E +  +A
Sbjct: 296 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 328


>gi|301346879|ref|ZP_07227620.1| sensory box protein [Acinetobacter baumannii AB056]
 gi|301596785|ref|ZP_07241793.1| sensory box protein [Acinetobacter baumannii AB059]
          Length = 875

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 301 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 359

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 360 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 415

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 416 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 475

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 476 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 534

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 535 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 594

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 595 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 654

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 655 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 713

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 714 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 773

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 774 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 833

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 834 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 870



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278
           +    +       + I+   L   +      +        + ++S+ II L       R+
Sbjct: 15  LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 74

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                   +       +   +  +       +      ++    T    Y   + Y++  
Sbjct: 75  F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 127

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L+                +     +      L   L   V        Q         Q
Sbjct: 128 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 177

Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +           ER        + A   +G   WDWDI + ++       T       +
Sbjct: 178 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 232

Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + P+  ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +
Sbjct: 233 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 292

Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533
           S        LR +G+  DI ++KK  E +  +A
Sbjct: 293 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 325


>gi|27382218|ref|NP_773747.1| hypothetical protein bll7107 [Bradyrhizobium japonicum USDA 110]
 gi|27355389|dbj|BAC52372.1| bll7107 [Bradyrhizobium japonicum USDA 110]
          Length = 895

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 137/574 (23%), Positives = 273/574 (47%), Gaps = 21/574 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGL 440
               V + +      SQ + S  +   L V      +  +       +       TIL  
Sbjct: 314 FLMLVFEDITDRRSLSQELESTKKFLELVVDNIPVALIVEQVKDGRYLLANRSAETILNR 373

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G   +     +  +        ++ +  +RG +  E  +   D    ++  R  
Sbjct: 374 RREEATGLTAS--DIFNPKEAKLIIARDEAAIK-KRGMITEEHPISTKDGLRLFLTRRAT 430

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +S++ G+    I    D+T+++++   +   A+ D LT +PNR +FL  LT +++ +  
Sbjct: 431 VLSDA-GEPQYLIKTHEDVTDRRQTESRMAHMAYHDGLTDLPNRAAFLQALTQMIE-ACE 488

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  V+ +D+D  K++NDV G A+GD +L+ + +R+ +      ++ARLSG+ FG+I
Sbjct: 489 GTGEEFAVLCVDLDGLKEVNDVFGHALGDKLLIEVAQRLQDSA-RGGVVARLSGDEFGLI 547

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A  + +++A    +  R +   A+ G + +  +    + +L NA  A
Sbjct: 548 IDG-KQPEAGLALAQQLGEAVAREFQIDGRPVRAGATTGMSIFPHNGADGASLLANAGAA 606

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI----IRLMDEE 734
           ++ AK +    +  ++  +     DR ++ +DL +A++N EL L + P       + + E
Sbjct: 607 LFRAKQKSRGTISLYQPEMDQQIRDRRVLHQDLSMAIKNGELSLAFQPQGAAGHSVAESE 666

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G EAL +W HP  G +S +EF+ IAEE  +I  +  ++L    R+  SW       P+
Sbjct: 667 IIGFEALARWQHPVRGQVSPAEFIPIAEESGLIVEMGEWILREACREAASWPK-----PL 721

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++    +  ++   + +++ +T  +P R++L  +E V++ + +R   LL RL+ +
Sbjct: 722 QVAVNLSPAQFMHGDVVGLVHSILIETGLAPGRLELEITEGVLIEDFDRGLALLRRLKAL 781

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S LSYL   PFD +K + + +       +  AI+R++I +   +E +
Sbjct: 782 GVRISMDDFGSGYSSLSYLQAFPFDKIKIDRAFIINLGRNPQSAAIVRAVIDLGHGLEMS 841

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           IIA+ +     +  L + GCD +Q   +  PL  
Sbjct: 842 IIAEGVETLDQLAFLAKEGCDGVQGYLLGKPLPI 875



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 4/149 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLA 441
                  V      S+ + S  +     +      V   +I     +          G  
Sbjct: 188 SVATHLDVSEERRLSRQLASTKQFLETVLDNVPACVAAKNIEDGCYIFANTAYERFWGFT 247

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G               +      + +    G+ + EF V     +   +      
Sbjct: 248 RDQVVGKNA--RELFAPVSAASIEATDRAALNSPDGQFRNEFEV-DRGGERRMVASIRIV 304

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
           + N N      + +  DIT+++   + + 
Sbjct: 305 VRNENNKPEFLMLVFEDITDRRSLSQELE 333



 Score = 38.0 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 30/202 (14%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A  + PA             ++     N I   AL+GG+V+   L+   +  H  A    
Sbjct: 23  AGTVAPARAFALSDSFAPPSSLDNLDPNLIW-EALIGGIVVCAFLVAIALWIHS-ALRRT 80

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +         S A+      V   D  R  +        I GL+   +      W    
Sbjct: 81  RRLQLRRNAFVSSAMNNLNQGVVMTDAQRRVIFCNDRYLEIYGLSRSDL------WADMN 134

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY---- 512
             +  +     L    G   G    EF  +AA                 +G  +      
Sbjct: 135 GHDILE-----LRRKRGVLGGVSDKEFYEKAASG-------NGLITELPDGRAILVKYFV 182

Query: 513 ------IGIANDITEQKKSLEG 528
                 +    D++E+++    
Sbjct: 183 LPNGGSVATHLDVSEERRLSRQ 204


>gi|67920984|ref|ZP_00514503.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67857101|gb|EAM52341.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 595

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 236/440 (53%), Gaps = 5/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+  E +  +A QD LT + NR  FL+R+   L     +++    V VID+D++K IN
Sbjct: 154 DLKQIQEKLSFHARQDTLTHLVNRSVFLERIDLALKRFHEEEDYLFAVFVIDLDRFKMIN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +LV ++R +  L+   D +AR+ G+ F I+L    +  +    A  ++++
Sbjct: 214 DSDGHQVGDLLLVEVSRILESLVSQADTVARVGGDEFAILLDPIRDVNEALKLAQNIKEA 273

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +     +  R++ +++SIG     SS  ++ E+L++A++AM  AK +G    E F     
Sbjct: 274 LTTSFFIQGRQVFISSSIGLTFSESSYNSALEILRDADIAMGKAKQKGRGKYEIFNQEMH 333

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + + ++ DL   +E  E  + Y PI+ L   ++VG EALI+W HP  G IS  EF+
Sbjct: 334 TQALNLLTLETDLRYGIEKQEFEVYYQPIMNLNPIKLVGFEALIRWQHPDKGFISPGEFI 393

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817
            +AE   +I  I   +LE++ + I +W+ +      + I +N++SK   +  + + +  +
Sbjct: 394 PVAENTGLIIPIGKIVLEKVCQQIQTWKKKFQQITILKIAVNLSSKQFKNAYILQEIDEV 453

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T  + + +KL  +E+ ++ + + +  LL +L++  + + LDDFGT  S LSYL   P
Sbjct: 454 MERTGLTSNNLKLEITETSLIDHSQETIKLLKQLKQRNLEICLDDFGTGYSSLSYLHRFP 513

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +      E+ + I++SII +A N+   ++A+ I  E  +  L ++ CD+ 
Sbjct: 514 VDTLKIDRSFINCIGQPEENLEIIQSIIHLAHNLGMNVVAEGIETEEQLIYLQKLNCDFG 573

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q      PL       LL++
Sbjct: 574 QGYLFNRPLTAQETENLLRD 593


>gi|229143272|ref|ZP_04271703.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
 gi|228640079|gb|EEK96478.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST24]
          Length = 689

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 254/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +   P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLSTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|66046558|ref|YP_236399.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257265|gb|AAY38361.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 732

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 129/588 (21%), Positives = 231/588 (39%), Gaps = 18/588 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+     +I   +     +        R       S D +   D     ++       I
Sbjct: 146 LVLQDLAVMIIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAEII 205

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494
            G  S    G   +    I    R      L          +            D     
Sbjct: 206 FGHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAVHRDGHTIP 263

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + +     S G+      I  DIT++ ++ + +   A  D+LTG+ NR +   R+   
Sbjct: 264 IELSLS-QWTSAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                 D  L   +++ID+D +K +ND LG A GD VL   + R+ E +    +++RL G
Sbjct: 322 C-----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGG 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F + L    +  K     + +   I  PI   +  I + ASIG +    S     +ML
Sbjct: 377 DEFVVFLSETADPDKAIKLGLELIAVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQML 436

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D
Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+     
Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEE 556

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR
Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ +++ +A    
Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFN 675

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERF 957
             + A+ I        +    CD  Q      P+  +    + +    
Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYISSHN 723


>gi|300310170|ref|YP_003774262.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072955|gb|ADJ62354.1| diguanylate cyclase/phosphodiesterase A protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1002

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 227/439 (51%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +   I   AF D+LTG+PNR   L +    +  +  + +    VM ID+D++K++N
Sbjct: 546 EREDARARIHQLAFYDSLTGLPNRSLLLVQAGQAIAAAERNCST-VAVMFIDLDRFKQVN 604

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L ++  R+    +  DI+ RLSG+ F ++L    ++  + +    +++ 
Sbjct: 605 DSLGHQAGDELLRTVATRLQSQARRSDIVGRLSGDEFVVVLTQY-DTQHLTEVVKRIQER 663

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
           +AMP ++    +  +ASIG A +  +      +L  A++AMY AK  +RG     S  ++
Sbjct: 664 LAMPCHINGTPLNPSASIGVAIFPDNGNDIETLLHRADIAMYQAKAVNRGRFSFFSEEMN 723

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   +R+ ++  L  A+   +L L + P I+L D+ + G+EAL +W HP+ G IS   F+
Sbjct: 724 SMAQERLALESALRDALRGGDLELNFQPQIKLHDQSLHGVEALARWHHPQLGQISPGRFI 783

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  +  + LE     +  WR +    P  I +N+++ +  D +L + +  L+
Sbjct: 784 PIAEECGLIGELGKWALEEACFQLSDWRRRGIQVP-SISVNLSATNFHDLDLPQFVTGLL 842

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    PS + L  +E+V+M     +   +  +  +GI L +DDFGT  S L YL  +P 
Sbjct: 843 RRYALEPSDLTLEITETVLMDTNPSTSQTIAAVHALGIPLAMDDFGTGYSSLGYLRKLPV 902

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +    +     A+  ++I + ++++ T++A+ +        L   GCD  Q
Sbjct: 903 SELKLDQSFVRDMAKDPAVSALTNAVIRIGESLKLTVVAEGVEDAEQYALLISQGCDVAQ 962

Query: 937 DSHVASPLGFNSILKLLKE 955
               + P+  +++   +++
Sbjct: 963 GYLFSRPMSADALENWVRD 981



 Score = 55.3 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q         Q +        LA L     + ++      +    +   +LG     + G
Sbjct: 4   QDSFMGEVDHQRLSGSERDALLAALWRSMAILEFSADGTVLEANENFLAMLGYRRADVVG 63

Query: 448 PIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                L                   +  +   +    + R       W+     P+ ++ 
Sbjct: 64  QHHRML--CDPAYVQTDAYQQFWEHLR-KGELIAGTLQRRHVGGATVWLEALCSPILDAQ 120

Query: 507 GDILRYIGIANDITEQ 522
           G +L+ I +A DI+  
Sbjct: 121 GQLLKVISVAADISAH 136



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 5/125 (4%)

Query: 402 SDGERQSLAVLGSGD---IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           SD E   L  LG  +    V   D     V        +LG  S  + G +   L     
Sbjct: 264 SDREHLHLLSLGINETDNAVLITDDQNRIVFHNTGFTRMLGFESQQVIGRLPGELFASRP 323

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
               +        V  R      E  +     Q  W+   + P+ +  G ++  + +  D
Sbjct: 324 TFVKSLERCHGELVQGR--SYHTEELIHDMQEQPVWISAVVNPILDGAGKLIHAVCVMTD 381

Query: 519 ITEQK 523
           IT  K
Sbjct: 382 ITNTK 386



 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 46/172 (26%), Gaps = 7/172 (4%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS----LA 410
              I   L    +  A V    L   ++        + +         D  R S     A
Sbjct: 90  GELIAGTLQRRHVGGATVWLEALCSPILDAQGQLLKVISVAADISAHIDDSRHSNSILSA 149

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  S   V +       +    +    +   +  + G   + L        + +      
Sbjct: 150 LNRS-LGVVELSPEGVILAANGNYLKTMEYLAEDLLGQPHSILCEADYAASEEYTCFWRD 208

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               R       F  R    +  W      P+ +++G   R I I  D+T +
Sbjct: 209 VSLGR--FFSGRFPRRTRSGRTIWWEATYSPLLDAHGKAERVICIGTDVTYR 258


>gi|149908086|ref|ZP_01896754.1| PAS:GGDEF [Moritella sp. PE36]
 gi|149809092|gb|EDM69023.1| PAS:GGDEF [Moritella sp. PE36]
          Length = 1165

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 128/584 (21%), Positives = 251/584 (42%), Gaps = 15/584 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            F +++  +     +   +   E+  L       + + +   D+    +   P      G 
Sbjct: 571  FKLLEFAVQLSVIAIERYLSDEKLRLSSRVFSDTNEGLMITDVTGKIIDVNPAFTRATGY 630

Query: 441  ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            +   + G   + L          F  +  S +    G    E   +  + +     + I 
Sbjct: 631  SRSEVLGQKPSILAS-DKQSPAFFIEMWQSLMEQ--GYWHGEVWNKKKNGELFAARLSIS 687

Query: 501  PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             ++N +G+ L Y+G+ +DIT+ K+  + +   A  D LT +PNR    DR  + +  S  
Sbjct: 688  SLTNDDGENLHYVGLFSDITQIKQQQQKLEMMAHYDMLTKLPNRSLLADRFKSGIAHSQQ 747

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             D     V  +D+D +K +ND  G  VGD +L+++ +R+   ++  D  +R  G+ F ++
Sbjct: 748  TD-TMLGVCFLDLDNFKPVNDSYGHDVGDQLLIAVAQRLKSNIRDEDTASRQGGDEFVLL 806

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            L    +     +    +   +A P  +      ++ SIG   +         +L++A+ +
Sbjct: 807  LGDIKSLAHCDETLQRINYFLAQPYIIAGHTFNISVSIGVTLYPDDDADLDTLLRHADYS 866

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            MY AK  G N    F     +      ++  ++  A+ N+E  L Y P I +   ++ G 
Sbjct: 867  MYQAKLTGKNRFHLFNPERDQQKIQKHQQLDEIKQALSNNEFALYYQPKINMKTGKVFGA 926

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EALI+W HP+ G I   +F+ I E   +   I  +++ +  + I+ W+         + +
Sbjct: 927  EALIRWFHPEKGLIPPLDFLPIIEGSELENQIGDWVINQALKQIVEWQKLGIFME--VSV 984

Query: 799  NIASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGI 856
            NIAS  LL  +    +++ ++         ++L   ES  +G+    R +L   R  +G+
Sbjct: 985  NIASYHLLSAKFLTLLESALASHPNLDAQYLQLEILESSALGDLNTIRNILNTCRDVLGV 1044

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            ++ LDDFGT  S L++L  +P +T+K + + +          AI++ ++ +A +    +I
Sbjct: 1045 NIALDDFGTGYSSLTHLKNLPANTIKIDQNFVKNMLDDPDDYAIIKGVLALADSFNREVI 1104

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            A+ +        L  MGC   Q   +A P+  + I   L    P
Sbjct: 1105 AEGVETTEHGLMLLSMGCYAAQGYGIARPMPASDIPNWLHNYIP 1148



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 4/190 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--G 399
             W+L      G    I+    + +     +      ++++     Q  L     ++   
Sbjct: 238 VTWMLKMSPINGWVHYISLLAMSLLSMTFTILTTFSAILIMRIKDNQKSLENIVATRTRE 297

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  +  R ++A+  +G + ++ +I    V+       +  +    +      WL  IH +
Sbjct: 298 LGDNLTRLNMALTSTGQVWFELNIQSGEVSFGGKNEQLTDVNPSDIQTIFEQWLEKIHPD 357

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGIAND 518
           D ++        +       + E+R +  D  + W+         +++   +   G+  D
Sbjct: 358 DFESASNRYKKSL-VSGMPFELEYRRKTKDGNWLWIHTACEFTAWDAHHKPIWCTGVHTD 416

Query: 519 ITEQKKSLEG 528
           IT++K+    
Sbjct: 417 ITQRKQIELR 426


>gi|30018735|ref|NP_830366.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|229125981|ref|ZP_04255005.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
 gi|29894276|gb|AAP07567.1| Sensory box/GGDEF family protein [Bacillus cereus ATCC 14579]
 gi|228657464|gb|EEL13278.1| Sensory box/GGDEF [Bacillus cereus BDRD-Cer4]
          Length = 689

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEGMHLFREHDDQFVMLIENIK-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|170724023|ref|YP_001751711.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169762026|gb|ACA75342.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida W619]
          Length = 896

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 148/568 (26%), Positives = 269/568 (47%), Gaps = 17/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S       +         P    I   ++  + G     LP +
Sbjct: 335 RRTAASALHLFQRAVEQSASAFLLVNRDGVVEYVNPSFTAITQYSTDEVQGHHLAELPAL 394

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 395 -----ENLSELLFDTPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+T+ K + + I   A+ DNLT + NR +F+  L       A D      ++++DID
Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGQSPICLLLVDID 506

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L    +LAR + N F ++L  + +       A
Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLSVGGVLARFASNEFAVLL-DDTSLEDGQGVA 565

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + +++  P+ +  + I VTAS+G A         + ++KNA LA++ AK  G + V+ 
Sbjct: 566 QQLLRTLDKPMFVDNQLINVTASVGLACAPLHGSDPTTLMKNAGLALHKAKANGKHQVQV 625

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++GLEAL++W+HP+ G I
Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +  R +     +A M  + + IN++ K   D +L  
Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQSCR-MSQQLREAGMGNLHVAINLSPKQFSDPDLVA 744

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + +++ +       ++L  +E +++   E +   L  L+ +G++L +DDFGT  S LSY
Sbjct: 745 SIASILHEEALPAHLLELELTEGLLLEATEDTHRQLDELKALGLTLAMDDFGTGYSSLSY 804

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K + S +      +  + I  +++ MA N++  ++A+ I     +  L R 
Sbjct: 805 LKKFPIDIIKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAFLRRH 864

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958
            CD  Q      P+    + + LK R+P
Sbjct: 865 RCDVGQGYLFDRPIPGRELAERLK-RYP 891


>gi|327191881|gb|EGE58874.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 777

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 143/748 (19%), Positives = 289/748 (38%), Gaps = 48/748 (6%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271
             R  + I   A A+    + +     L+    +      +        LS +       
Sbjct: 43  AGRRKLWIGASAFAFGTGVWATHFIAMLAYDGGM-PISYQLGLTALSFLLSVAGSW--AA 99

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI------ARITLASIVLYYTYF 325
            L  ++   +   I    +  + I          +               A +       
Sbjct: 100 ILVASKGRGRFSSIQGGVLMALGIAAMHLTGMQAIETQAEILYDPTMTVTAVLAGALLSS 159

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFI------GLWMAITKRLDNDIIQPALVGGLVLIV 379
           I ++     +    L+ + I   +            + +      ++    L   L+  +
Sbjct: 160 IAFYAFFHLKGLRRLLASSITFVLAICALHFISMASITLVPDPGKEVPATVLDTSLLATI 219

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +++  T +  +     F +   +D    +     S + +         + T      + G
Sbjct: 220 VVVAATALILIAIAVAFFESHLTDLRGLA---NASQEGLLILR-EGRIIDTNERFQGLSG 275

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G   +               +L +  G  R     E  ++  + +   + +  
Sbjct: 276 WKLADLSGKAPSI--------------VLTAVQGQNRP---GETLLKTRNGREIAVEVNT 318

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +     +    +    D+TE++++ E I   A  D LT +PNR  F  R+   L ++ 
Sbjct: 319 SRIVYRGHNCD--VLAVRDLTERRQAEEIIEHLAHHDVLTDLPNRSLFDKRIRQALQMAK 376

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              N    +  ID+D++K +ND+ G A GD +L  +   +  +    D +ARL G+ F I
Sbjct: 377 -GKNSEVALFYIDLDRFKTVNDIFGHAEGDRILCKVAAILRRVADERDTIARLGGDEFAI 435

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I  +          A A+    A  +++      V  S+G A + +      E+  NA++
Sbjct: 436 IQSAGQQPAAAQKLAAAILDEFAAEMDMARDPTAVGVSLGIALYPADGSDPDEICNNADI 495

Query: 680 AMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y  KH G      F          R  I+ +L  A+  +++++ Y P++     EI G
Sbjct: 496 ALYRVKHGGRGKACFFNAEMDEATRARRQIESELRHAIIRNQIHVSYQPVLDAQSGEISG 555

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+ P  G      F+ IAEE   I  +  ++L++  ++   W D     P+ I 
Sbjct: 556 YEALMRWNRPGHGLSEPDIFIPIAEESGSIVQLGEWVLQQACKEAARWPD-----PLRIA 610

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++    +   LCE ++A++ +T  +P+R+++  +E+ ++ + +R    L RLR +G+ 
Sbjct: 611 VNVSPVQFMLPNLCERIEAILKETGLAPARLEIEITEAALIRDRDRVMATLQRLRSLGVH 670

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIA 915
           + +DDFGT  S LS L   PFD +K + S          A  I+R+II +  ++   ++ 
Sbjct: 671 IVMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAAARSIVRAIIGLGHSLGMPVVT 730

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +  E   + +   GC  +Q   +  P
Sbjct: 731 EGVETEAQRQIVVEEGCAQVQGFLLGRP 758


>gi|218133210|ref|ZP_03462014.1| hypothetical protein BACPEC_01072 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992083|gb|EEC58087.1| hypothetical protein BACPEC_01072 [Bacteroides pectinophilus ATCC
           43243]
          Length = 718

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 138/580 (23%), Positives = 243/580 (41%), Gaps = 39/580 (6%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLA 441
              +IQ +      +  + S  E     +   G  +        + +             
Sbjct: 159 TARIIQSIAQKKIINNSLLSSYELLREILSNIGSGIIVCSQENGNVLFENDIAQN----- 213

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFR-VRAADNQF-HWMII 497
                               D  R  +   +     +G    + R V   D Q   W  +
Sbjct: 214 -------------------ADEVRRTMKECIQDFFDKGCPMEDIRPVENYDAQSGLWFEV 254

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R  P++  +G  +  I  A DIT++KK+ + I   A  D LTG+ NR      L  ++  
Sbjct: 255 RFAPLNWLDGSPV-IICTAVDITQKKKNQQKIEYQAHNDFLTGLYNRMKCESDLRKVIKN 313

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +  D      VM ID+D +K IND LG   GD +L  +   I  +        R+ G+ F
Sbjct: 314 AVKD-GTTGAVMFIDLDNFKHINDGLGHQYGDVLLQQVAAGIQGIAGLRGHCYRMGGDEF 372

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            II+       ++      +         L+  E   T S+G A +       +E++K A
Sbjct: 373 VIIIEP-QLYDQLDRLVRIISDMFNRSWYLMGTEYYCTMSMGIARFPEHGSDVNELIKKA 431

Query: 678 ELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAV--ENSELYLVYHPIIRLMDE 733
           ++AMY AK  G N    +     S    ++ I+ ++  AV  E  E  + Y P++  +  
Sbjct: 432 DIAMYEAKKGGKNRYAYYSAGNDSGSIKQLDIENNMRQAVASECDEFIVFYQPVVDAVTR 491

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E V  EALI+W+    G ++  EF+ +AE L +I +I  F+LE   R    W +    P 
Sbjct: 492 ECVSCEALIRWNSKALGFMAPGEFIPLAEYLGLITSIGDFILEEACRQCKDWNEH-GFPD 550

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++   L+  ++ + ++ ++ +T  +P  I L  +ES  + + ER   ++  LR+
Sbjct: 551 FRININLSVVQLMQKDVVDNVKKILDRTGVNPHNIVLEITESFAINDMERVMNIVKGLRR 610

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIET 911
           +G  + LDDFGT  S L+Y+  +P D +K + + +    +     A ++ I+ ++K I T
Sbjct: 611 LGPKIALDDFGTGYSSLNYIKQLPLDIIKVDKTFIDDIVDDDYAKAFVKLIVELSKTIGT 670

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            I  + +      + L+++G DYIQ  +   P+       
Sbjct: 671 KICVEGVESREQYEVLSQIGVDYIQGYYFGKPVPVGEFAH 710


>gi|190574274|ref|YP_001972119.1| putative PAS GGDEF EAL domain-containing protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012196|emb|CAQ45819.1| putative PAS GGDEF EAL domain protein [Stenotrophomonas maltophilia
           K279a]
          Length = 919

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 132/548 (24%), Positives = 238/548 (43%), Gaps = 10/548 (1%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           + ++    +  T +   I GL    +   +   L     + R+ F   L           
Sbjct: 368 EIEVKTRHMQWTEECYRIHGLRKEPI--TLDQALALYTEDSRNAFEAALARIANGGLPE- 424

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q +           W+ + I      +G   R++ +  DIT ++++ E I   A  D LT
Sbjct: 425 QLDLCFYRQSGLRVWVQVLIELDR-RDGLPPRFVVLFRDITREREANERIELLAHYDLLT 483

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    ++    ++ +  D      ++ ID+D +K IND  G A GD +L +   R+
Sbjct: 484 GLPNRVLLGEQTAEAIEEA-RDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRL 542

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            + L+  D+  R SG+ F ++L            A  +  S+A P+   E  + V AS+G
Sbjct: 543 HQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVG 602

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717
            A    ++     +L+ A+ AMY AK  G N  + +   +      ++ ++  L  A+E 
Sbjct: 603 IAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIER 662

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P++     E   +EAL++W  P  G  S +EF+ IAE+   I  I  ++L  
Sbjct: 663 EEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNE 722

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R   +W          I +N+++  L D    E +  +     + P R++L  +ES +
Sbjct: 723 ACRQATAWDRAGLRFD-RIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESAL 781

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895
           + + +  R     L + G+ L +DDFGT  S L+YL   P   +K + S + G       
Sbjct: 782 IRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGT 841

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + ++I+ +   +   ++A+ +    +   L R GCD IQ    + PL    + + L++
Sbjct: 842 AEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQ 901

Query: 956 RFPLVKNT 963
             P+   T
Sbjct: 902 PQPVSLRT 909



 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  LA+  +G  +WDWDI  DRV  TP +                  L  +H  D    R
Sbjct: 107 RWELALDSAGHSLWDWDIPSDRVVRTPAVGD----------ETATEMLARVHGEDIAQVR 156

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             LD  +     +   +FR R AD Q+ W++ R R +   ++G  LR +G   DI +QK+
Sbjct: 157 AALDEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQ 216

Query: 525 SLEGILCNAFQ 535
               +      
Sbjct: 217 LEGLLQEQQLH 227



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 9/155 (5%)

Query: 398 QGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +G+  + +   S A   +    W +D        +P++ ++L L  G++ G  R WL  +
Sbjct: 218 EGLLQEQQLHLSEAQRIASMGSWSFDPNSGDFWWSPELRSMLALEQGAVPGQ-RRWLKQL 276

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H   R   R          R     E  +   +     + + ++P+ + +G   R +G  
Sbjct: 277 HPRSRGALRAAWGRLWRDGRAA-NLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQV 335

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            +ITEQ ++   I         T + NR S L R+
Sbjct: 336 QNITEQHQTDALIRWR------TELLNRVSALGRI 364


>gi|126642377|ref|YP_001085361.1| sensory box protein [Acinetobacter baumannii ATCC 17978]
          Length = 860

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 286 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 344

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 345 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 400

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 401 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 460

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 461 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 519

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 520 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 579

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 580 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 639

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 640 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 698

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 699 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 758

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 759 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 818

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 819 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 855



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
                  + I+   L   +      +        + ++S+ II L       R+      
Sbjct: 6   CLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 60

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
             +       +   +  +       +      ++    T    Y   + Y++   L+   
Sbjct: 61  --YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 115

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
                        +     +      L   L   V        Q         Q +    
Sbjct: 116 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 168

Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449
                  ER        + A   +G   WDWDI + ++       T       + + P+ 
Sbjct: 169 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 223

Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506
            ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +S     
Sbjct: 224 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 283

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
              LR +G+  DI ++KK  E +  +A
Sbjct: 284 NKALRMVGMTRDIHQEKKDQEHLRLSA 310


>gi|284042708|ref|YP_003393048.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Conexibacter woesei DSM 14684]
 gi|283946929|gb|ADB49673.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Conexibacter woesei DSM 14684]
          Length = 1090

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/591 (21%), Positives = 256/591 (43%), Gaps = 23/591 (3%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440
            +   +I  V AT      +    ER    +    + +  +      ++       I G+ 
Sbjct: 504  LTQGIITDVTATRIAEAALAESEERSRAVIGALEEGLLIYGADGRVLSCNAAAVRIFGVD 563

Query: 441  ASGSMHGPIRNWLP---YIHINDRDNFRT-------ILDSFVGYRRGRLQYEFRVRAADN 490
            +   + G +         +   D              L++ +      + +E   R  D 
Sbjct: 564  SEEELLGTVVAQGSPRVRMTYEDGSEVTRTNSTAGRALETGLPQPERVVHFE---RDDDG 620

Query: 491  QFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
               W  +   P+           +    D+TE++++ E I   A+ D+LT +PNR    +
Sbjct: 621  WELWATVTSHPLLREGESRPYGAVSAFTDVTERRRAQEQIAFLAYHDSLTRLPNRALLDE 680

Query: 550  RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
                +    A        ++ +D+D +K +ND LG A GD++L  +  R+  +++  D+L
Sbjct: 681  H-LALALARARRAGESVALLYVDLDDFKAVNDSLGHAAGDELLKRIAVRLRAVVRSSDLL 739

Query: 610  ARLSGNRFGIILISENNSLK--IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            AR  G+ F I+L   +   +      A  +  ++  P +L + E  V ASIG + +    
Sbjct: 740  ARQGGDEFLILLTDLDKDPRLSAEAAAKQVETALIEPFHLADAEFEVGASIGISIYPDDA 799

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHP 726
              +  ++++A+ AMY  K  G   + S+   S ++  R+ +   L  A++  +  + Y P
Sbjct: 800  ADADTLMRHADAAMYEVKQAGRGGIASYGGDSRKTLARLSLTSKLRRALQREDFVVHYQP 859

Query: 727  IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I+      +   EAL++W   + G +  +EF+ +AE+  +I+AI  ++L  + R   +W 
Sbjct: 860  IVAPATGALHAFEALVRWQDAERGVVGPNEFIPLAEDAGLIEAIGGWVLNEVCRQQRAWH 919

Query: 787  DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            D        + +N++ + L   +    ++  + +   +PS + L  +ES  M + ER+  
Sbjct: 920  DAGMES--HVHVNVSPRQLRRPDFPSTVRDALEEQRLTPSMLTLEITESAAMLDAERANP 977

Query: 847  LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIP 904
            ++  L  +G+ L +DDFG   S L+ L  +P  T+K + S + G  + R   A++ +II 
Sbjct: 978  IVRALHDLGVRLAIDDFGAGHSSLARLRDVPVQTLKIDQSFLRGVPDDRQAAAMITAIIE 1037

Query: 905  MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   +    +A+ +  +   + L    C   Q  H A PL  +   +LL+E
Sbjct: 1038 LGTALGMVTVAEGVTTDAQRRFLVDGDCPLAQGFHFARPLTADDATRLLRE 1088



 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 3/142 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI--VWDWDIVRDRVTTTPDIATILGLA 441
             ++  V A    +  +     R    V     +  V +WD +   +  +P I  ++G  
Sbjct: 376 IGILHDVTARVTAAVELAETESRYRTLVETIPAVTYVAEWDELGTLIYVSPQIEEMMGFP 435

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +    G    W   IH +D D             +     E+R+ AAD +  W+      
Sbjct: 436 AAGWLGETSLWDTQIHPDDVDRVMAETRYAFRQEQA-FDCEYRLIAADGRIVWVWEHDTV 494

Query: 502 MSNSNGDILRYIGIANDITEQK 523
           + + +G      GI  D+T  +
Sbjct: 495 IRDEHGRPRLTQGIITDVTATR 516



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 14/185 (7%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALV-GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           +    +    A    L+  +   A   G L+  V  +   V  H+         +    E
Sbjct: 212 LLAIPLVAGSACEGVLELRLPDGARADGQLIADVAALAGQVAVHLRYRRGA--ALLDLHE 269

Query: 406 RQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWL--PYIHIND 460
           R +LA   +G ++ + D                 + G  S  + G     L         
Sbjct: 270 R-ALAATNNGIVIAERDEETGGWPATFVNEAFEQLTGYRSDEVVGRSLVLLQGEETDPEA 328

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                  L S             R    D    W  I + P+++ +G + RYIGI +D+T
Sbjct: 329 IAEMGAALRSA-----DECWVTVRNYRRDGSVFWNEIFLMPVADDDGVVRRYIGILHDVT 383

Query: 521 EQKKS 525
            +  +
Sbjct: 384 ARVTA 388


>gi|26987079|ref|NP_742504.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida KT2440]
 gi|24981704|gb|AAN65968.1|AE016225_1 sensory box protein [Pseudomonas putida KT2440]
          Length = 896

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 146/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S       +         P    I   ++  + G     LP +
Sbjct: 335 RRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPAL 394

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 395 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+T+ K + + I   A+ DNLT + NR +F+  L       A D      ++++DID
Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESSMCLLLVDID 506

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L    ILAR + N F ++L  + +       A
Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLL-DDTSLEDGQGVA 565

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I VTAS+G A      +  + ++KNA LA++ AK  G + V+ 
Sbjct: 566 QQLLCTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 625

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++GLEAL++W+HP+ G I
Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +    +     +A +  + + IN++ K   D +L  
Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQAC-CMSQQLRKAGLGNLHVAINLSPKQFSDPDLVA 744

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859
            +  ++ +             E++                  E +   L  L+ +G++L 
Sbjct: 745 SISTILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 791

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  +++ MA N++  ++A+ 
Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 851

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+    + + LK R+P
Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891


>gi|261212236|ref|ZP_05926522.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341]
 gi|260838844|gb|EEX65495.1| hypothetical protein VCJ_002510 [Vibrio sp. RC341]
          Length = 684

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 254/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F T L + +  +        R  +E +++        +    + +      
Sbjct: 183 FIDEKTKTVFSTQLATLLTEKPLVCLTGPRCGFERKIQLHAGSTSLLGSHSQLIL----- 237

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                    D  E  K+       +A  D+LTG+ NR  F  RL  ++      +     
Sbjct: 238 -------LQDADEAPKQLSATTQVDAHMDSLTGLYNRHGFTKRLEQLI-----HNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNSITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|116249925|ref|YP_765763.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115254573|emb|CAK05647.1| putative GGDEF/EAL domain transcriptional regulator [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 794

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 145/779 (18%), Positives = 306/779 (39%), Gaps = 44/779 (5%)

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYM----VNRSSMLIPTFAMAWVVLGYISIDFG 237
           +D  +   +     + +   +A  L +         R  + I   A A+    + +    
Sbjct: 9   RDNHDWRLVLAAAAVCLVGTMAAMLLLSRAQECDAGRRKLWIGASAFAFGTGVWATHFIA 68

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
            L+    +P G  L   A S +         + +        +++       +   ++  
Sbjct: 69  MLAYDGGMPIGYQLGLTALSFLLSVVGSWAAILVASESRGRFSRIRGGVLMALGIASMHL 128

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL--IPAWILIFIWFI--- 352
                     A +    +    +     +       + ++  L  + A  + F+  I   
Sbjct: 129 TGMQAIETQAAILYDPFMTLSAVLAGALLSSAAFHAFFQSKGLRRLLASSITFVLAICAL 188

Query: 353 ----GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  + +      ++    L   L+  ++++  T +  +     F +   +D +  +
Sbjct: 189 HFISMASITLVPDPGKEVPATVLDASLLAAIVVVAATTLILIALAVVFIESHLTDLKGLA 248

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                S + +         +        + G     + G   +                +
Sbjct: 249 ---NASQEGLLILR-EGRIIDANERFQGLSGWKLAGLSGKAPS---------------AV 289

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            + V         E  +   D +   + +    +     +    +    D+TE++++ E 
Sbjct: 290 LTAVQGTGQNRPSETVLNTRDGREIAVEVTASRIVYRGHNCE--VLAVRDLTERRQAEEM 347

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LT +PNR  F  R+   L ++    N    +  +D+D++K +ND+ G A G
Sbjct: 348 IEHLAHHDVLTDLPNRSLFDTRIRQALQMAER-KNSEVALFYLDLDRFKAVNDIFGHAEG 406

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  +   +  +    D +ARL G+ F II ++          A  +    A  ++  
Sbjct: 407 DRILRKVASILRRVADESDTVARLGGDEFAIIQLAGQQPAAAQKLAADILGEFAAEMDTA 466

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVM 706
                V  S+G A + +    + E+  NA+ A+Y  KH G   +  F         +R  
Sbjct: 467 RDPTAVGVSVGIALYPTDGAAAEELCNNADTALYRVKHDGRGKICFFDAEMDKAARNRRQ 526

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+ +L  A+  +++++ Y PI+  +  EI G EAL++W+ P  G      F+ IAEE   
Sbjct: 527 IESELRHAIIRNQIHVSYQPILDALSGEIGGYEALMRWNRPGHGLTEPDIFISIAEESGS 586

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++L++  R+ + W       P+ I +N++    +   LCE ++A++++T  +PS
Sbjct: 587 IVQLGEWVLQQACREAVRWP-----LPLMIAVNLSPVQFMLPNLCERIEAILAETGLAPS 641

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +E+ ++ + +R    L RL K+G+ + +DDFGT  S LS L   PFD +K + S
Sbjct: 642 RLELEITEAALIRDRDRVMTTLLRLHKLGVHIVMDDFGTGFSSLSNLRSFPFDKIKVDRS 701

Query: 887 L--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              +        +I+R+II +  ++   ++ + +  E+  + +   GC  +Q   +  P
Sbjct: 702 FTGVLEHDAGARSIVRAIIGLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKP 760


>gi|254228774|ref|ZP_04922197.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262396506|ref|YP_003288359.1| sensory box/GGDEF family protein ScrC (involved in swarmer cell
           regulation) [Vibrio sp. Ex25]
 gi|151938721|gb|EDN57556.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262340100|gb|ACY53894.1| sensory box/GGDEF family protein ScrC (involved in swarmer cell
           regulation) [Vibrio sp. Ex25]
          Length = 776

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 219/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGS-KVLVMFIDLDHFKQ 393

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+ ++ +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 394 INDSMGHFVGDEILKLSAQRLHQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 453

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +   P      E  +++S+G + +      + ++L  A++AMY  K  G +    +  +
Sbjct: 454 SAFNDPFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 513

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ +  L L Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 514 MNQDLQRYLDLENRLRNAISSQLLELYYQPIIELSSGKIVGAEALMRWNDEKYGFVNPEE 573

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  I  F +++  R    W+      P+F+ +N +S      + L   ++
Sbjct: 574 FISIAEKNGLIHQIGEFAIQQACRQAAQWQSL---TPLFVSVNFSSVQFRYCDRLLAFIK 630

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 631 KSLEESGLPSDKFDIEVTESLLFNHDSELLDMLNNLRALGTKLTIDDFGTGYSALSYLQK 690

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK +   I+A+ I  +  +  L  + C+
Sbjct: 691 FPFDRLKIDRSFMQNMFENDSDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKGLNCE 750

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + PL       LLK+
Sbjct: 751 FGQGFHYSRPLPAKDFEALLKQ 772


>gi|262172271|ref|ZP_06039949.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451]
 gi|261893347|gb|EEY39333.1| hypothetical protein VII_003098 [Vibrio mimicus MB-451]
          Length = 684

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 259/574 (45%), Gaps = 36/574 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG         +   L 
Sbjct: 125 LVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDTQKLLGENLS 180

Query: 455 YIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            + I+++    F + L S +  R        R  +E +V+               +  S 
Sbjct: 181 RLFIDEKTKTVFSSQLASLLTERPLICLTGPRCGFERKVQLHAGS--------TSILGSQ 232

Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +   
Sbjct: 233 SQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETP 283

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    
Sbjct: 284 LVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPE 343

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++      A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK
Sbjct: 344 HNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAK 403

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++
Sbjct: 404 ERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVR 463

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +
Sbjct: 464 WKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPE 522

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDF
Sbjct: 523 QFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDF 582

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +
Sbjct: 583 GTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLTVVAEGVETQ 642

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                L+ + C  IQ  H   P   + + +L  +
Sbjct: 643 QQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
 gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
          Length = 576

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/437 (28%), Positives = 234/437 (53%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E +   A  D LT +PNR   L+RL   L  +         ++ +D+D ++ IND +
Sbjct: 132 ETEEQLAYLANYDPLTKLPNRNLLLERLRQTLGRATRTHQ-DIAILALDLDNFQMINDGV 190

Query: 584 GIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G  VGD VL  + +R+ + +      +ARLSG+ F +I  S+N    +++ A  +  +++
Sbjct: 191 GHDVGDKVLHEVAQRLTQTVSKIGATVARLSGDEFVVIEESDNLVKDVSEMAQGLLDNLS 250

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
             + +   E+ VTASIG + + S    ++ +LKNA+ AM  AK  G N  + F+  ++  
Sbjct: 251 RSMVIDHHEMVVTASIGISVYPSDGEEAAILLKNADTAMARAKAAGKNTYQFFKAEMNKA 310

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+M++  L   + N+EL L Y P I L   ++VG+EAL++W HP++G  S  +F+ +
Sbjct: 311 AFERLMLENQLRKVLSNNELILYYQPQIELSSGQLVGMEALLRWQHPEFGICSPVKFVPV 370

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE+ +I  I  ++L    +   +W+ Q   PP+ + +N++S+    + L + ++  ++ 
Sbjct: 371 AEEMGLIVPIGEWVLRTACQQNQTWQ-QLGFPPVRVSVNVSSRQFFRDNLLQIIKEALAD 429

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +  +P  ++L  +ESV+M        LL  ++ +G+ + +DDFGT  S LSYL   P D 
Sbjct: 430 SNLNPIYLELELTESVLMAEESGIFELLTEVQNMGVHIAIDDFGTGYSSLSYLKRFPLDV 489

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +          AI  +II MA ++  +++A+ +  +  +  L +  CD IQ  
Sbjct: 490 LKIDRSFVKDICSDGNDAAITTAIIAMAHSLGLSVVAEGVETQGQLTFLQQQHCDVIQGY 549

Query: 939 HVASPLGFNSILKLLKE 955
           + + P+    + + L+ 
Sbjct: 550 YFSRPICSEKMTQTLQR 566


>gi|158318156|ref|YP_001510664.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EAN1pec]
 gi|158113561|gb|ABW15758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EAN1pec]
          Length = 804

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 137/563 (24%), Positives = 250/563 (44%), Gaps = 25/563 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDN 463
           R    + G+   +   D     V  +     ILGL+  +       W     +H  DR+ 
Sbjct: 253 RLHAVLSGTALGMLVADRTGRIVEASDAALEILGLSGHTA---PLAWPLPEIVHPADREA 309

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQ 522
            R +       RRGR + E R+   D    W+ + +        GD    + +  DITE+
Sbjct: 310 VRWLWREA---RRGRSRGECRILRPDGTPTWVALTLSTTWPGVAGDWFG-VAMLEDITER 365

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E +  +A  D LTG+ NR  FLDRL  +   +    + R  +  +D+D++K IN+ 
Sbjct: 366 RRLQEELRFHARHDPLTGLANRAEFLDRLQAVFREAP--PSARVGLCYLDLDRFKMINEG 423

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  VGD +L  + RR+G +      +AR+ G+ F I++       ++   A  +  ++ 
Sbjct: 424 FGYEVGDQLLAEVARRLGGMAVAERTVARMGGDEFMILVPDCGGLDEMTGIARRVLDTLR 483

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  R++  T SIG      +  + S+++  A+ A+  AK+ G N   +F       
Sbjct: 484 EPARVDGRDLPATCSIGVVEMAVADTSPSDLVAAADAALTWAKNGGKNRWTAFDPDRGTR 543

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +     +   +   ++  E  L Y PII L    + G EAL++WDHP+ G     EF+ +
Sbjct: 544 EAARGLMSRSMRPGLDRGEFSLAYQPIIDLRHGTVAGAEALLRWDHPRLGPTRPGEFIAL 603

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  + L++LER       W        +FI +N++++ L +  L   ++ ++ +
Sbjct: 604 AEDSGFIVQLGLWVLERACETARDWPAH-----MFISVNLSARQLREPGLVGAVKKVLDR 658

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R++L  +E+V+M +       L  L  +G+ + +DDFGT  S   YL  +P   
Sbjct: 659 TGLPPRRLQLELTETVLMDSGGDQVTALHALNDLGVRIVIDDFGTGWSNFVYLSTMPVRG 718

Query: 881 VKFNGSLM----TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +K  G  +     G+   +   ++ +I+  A+ +  ++ A+ +        L   G D  
Sbjct: 719 LKLAGLFVEKLGRGTEPGRDDHLVEAIVEFARRLRLSVTAEGVEEPEQAAALRSFGADLG 778

Query: 936 QDSHVASPLGFNSILK-LLKERF 957
           Q      P+  +     +L+  F
Sbjct: 779 QGHLFGEPVPADEFAATMLRRAF 801


>gi|221066763|ref|ZP_03542868.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
 gi|220711786|gb|EED67154.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
          Length = 820

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 145/771 (18%), Positives = 303/771 (39%), Gaps = 51/771 (6%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELL-----IWRACSEIALSSSLIIFLFMYLHWNRWH 279
            W+ +  I+  FG  +                       ++LS+++++ +  +   +   
Sbjct: 36  VWLSVAGIATGFGIWATYFIAMLTYSPRIQNSYNTTLVLVSLSAAILLAILSFAVTSGLP 95

Query: 280 AKVGYITFSGIACIAILF----CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            ++G      +    I       M+ +            +   ++  + F  +       
Sbjct: 96  QRLGREKGGLLVGCGIAIMHYSGMAAFEVPGRILWNPSMMVISIVLGSLFSTFALPTELR 155

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ-------------PALVGGLVLIVILI 382
           +          + +  +            D+IQ               L   + +  +LI
Sbjct: 156 KKTHRTITSGALLLTLVICNHHFAAMATADLIQDQSITVSTNATPVYWLAITVTIACLLI 215

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +       +       + E  +     + + +  ++           +A + G ++
Sbjct: 216 FLLTLIVFTLNVWNLHLATREMEHLNSLANAAFEGLLVYE-DGVITMANTSLAKLAGCSA 274

Query: 443 GSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +       L  I  +              +      L  E            +    R
Sbjct: 275 EELTHR---DLSLIFPDAMARNWLEEKPCIALKTMLHPLSGE--------DSIVVEATSR 323

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +  +   + + + I  D+ +  K+   I      D LTG+ NR++F   L  +L     
Sbjct: 324 SVIYAR-KLQKIVAI-RDLRDHIKAERDIHYLFNHDTLTGLINRKAFNQELEKLLQDHGA 381

Query: 561 DD---NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +         V+ +D+D++K++ND+ G A GD +L ++ RR  + L+   ++ARL G+ F
Sbjct: 382 NGRLCGKHLAVLCLDLDRFKEVNDLFGHAAGDGLLQTVARRAQQTLRSDQLMARLGGDEF 441

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEMLKN 676
            II    ++  +    A  +    A           T++ +IG A +      S  +++ 
Sbjct: 442 AIIAPGLSDPQQAERIAQKLFSVFADANRSASTSCATISINIGIAIFPQHGHNSPSIMRC 501

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A  A+  AK  G      F V       DR  ++ DL LA+ N EL LVY P+++    E
Sbjct: 502 AAKALCQAKADGRGVYRFFDVTLDQQMRDRQRLEHDLRLAIANQELSLVYQPLVQTKSRE 561

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG E L++W H K G +  S F+ IAEE   I  I  ++L +  ++  SW+       +
Sbjct: 562 VVGFETLLRWKHQKRGLVPPSVFIPIAEECGQILQIGEWVLHQACKEASSWKRH-----L 616

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N+++  L   +  +  + ++ +T   PSR++L  +E+ ++ +P+ +   + +L++I
Sbjct: 617 NIAVNVSAVQLHSPQFVQITREILKQTKLPPSRLELEITETALIRDPDIALSTIRQLKEI 676

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT 912
           G+ + +DDFGT  S LS+L   PFD +K +GS +       +   I+R+++ + + +E  
Sbjct: 677 GVRIAMDDFGTGYSSLSHLLTFPFDKIKIDGSFIKSVHVNPRAATIVRAVLELGRGLELP 736

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           ++A+ +  E ++  L+   C+ +Q      P      L+L      + + T
Sbjct: 737 VLAEGVETEEELAFLSAESCEEVQGYLFGKPESIERYLQLTTRALQVPRYT 787


>gi|17229798|ref|NP_486346.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131398|dbj|BAB74005.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 611

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 230/442 (52%), Gaps = 5/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++ ++K    +L  A  D LTG+PNR  F+ RL   L+ +  + N +  V+ +D D++K 
Sbjct: 166 VSARQKLQGKLLDMALHDALTGLPNRILFIRRLGKALNRAKEESNYQFAVLFLDCDRFKV 225

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD++L+S+  R+   L     LARL G+ FGI+L    +       A  + 
Sbjct: 226 VNDSLGHLVGDELLISIAHRLQSCLTPDATLARLGGDEFGILLEDIKDIRMAIQIADYIL 285

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++M   L   E+ +  SIG             +L++A+ AMY AK  G +    F  +
Sbjct: 286 QQLSMSFKLSRYEVFMNVSIGINWGHKGYDQPEYLLRDADTAMYRAKDSGRSRYHVFDPA 345

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   +  + DL  +VE  E  + Y PII L   +I G EAL++W HP  G I+ +E
Sbjct: 346 MHEEVIKALEKENDLRRSVEKQEFVIYYQPIISLSTGKISGFEALVRWQHPTHGLIAPTE 405

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815
           F+ +AEE  +I  IN+++L+   + +  W+     P  + I +N+++K  L       + 
Sbjct: 406 FIPVAEETGLINTINIWVLQSACQQLRIWQSHPGTPNNLTISVNLSAKLFLQTNFLTQVD 465

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +I +T   PS ++L  +E+V+M N    +++L +L++  I L +DDFGT  S LSYL  
Sbjct: 466 QIIKETQIDPSSLELEITETVIMENNNEIKVILQQLKERKIKLIMDDFGTGYSSLSYLHI 525

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PF+ +K + S +      ++ + ++ ++I +A ++  + IA+ +  +  +++L  + CD
Sbjct: 526 FPFNALKIDKSFVNRMLDNQENMGLVPAMISIAASMGMSAIAEGVETQEQLEQLKSLKCD 585

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q    + P+  N ++  +  
Sbjct: 586 FAQGYLFSQPIEQNLVIDFIAS 607


>gi|331007307|ref|ZP_08330506.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
 gi|330418869|gb|EGG93336.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
          Length = 712

 Score =  472 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/561 (22%), Positives = 243/561 (43%), Gaps = 24/561 (4%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W+ D+V   +  T +   +L  +    +  +   + Y     R      L++ + + +
Sbjct: 135 GGWELDVVTGHLFWTLETYHLLDTSPEEFNPSVDAGISYFLPESRQIITDALEAAIDHGK 194

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC----- 531
           G    E        +   +      ++   G  ++  GI  DI++QK S   +       
Sbjct: 195 G-YDLELETLTTKGRRIDVRTTCS-VTQEEGKTVKLTGIFQDISDQKSSQRQLESVNKAL 252

Query: 532 ---------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                     A  D LT +PNR    DRL   +     +      V  +D+D +K++ND 
Sbjct: 253 EDVNAELKSIAHYDALTHLPNRTLLADRLRQSILQKKRNGR-SIAVAFLDLDGFKEVNDT 311

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GDD+L+ +   + E L+  D LAR+ G+ F ++L    N  +       + K++ 
Sbjct: 312 FGHDAGDDLLIHIANNMKETLREVDTLARIGGDEFVVLLDDLVNPKECEFLLQGLLKTVV 371

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  L   ++ ++ASIG   +    + + ++L++++ AMY AK  G N    F V    +
Sbjct: 372 KPFILGTNKVQISASIGVTIYPQDGVDAEQLLRHSDQAMYRAKQSGKNCFHLFDVEQDVA 431

Query: 703 DRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +    E  ++  A+ N+E  L Y P + +   E++G EALI+W HP+ G +   +F+ +
Sbjct: 432 VKTQHAEIGNIQTALNNNEFVLFYQPKVNMQTGEVIGAEALIRWQHPQRGLLFPLDFLPV 491

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  +   I  +++      + SWR       I + +N+ +  L      + ++ ++S+
Sbjct: 492 IEDSPLSINIGEWVISTALEQMESWRLAGLD--IPVSVNVGALQLQQTNFLKRLENILSQ 549

Query: 821 T-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  + L   E+  +G+  +   L+   + + +   LDDFGT  S L+YL  +P  
Sbjct: 550 YPNTQPHHLGLEILETSALGDVSQVSTLINACQSLDVDFALDDFGTGYSSLTYLRRLPAT 609

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +         +AI+  II +A      +IA+ +      ++L  +GC   Q 
Sbjct: 610 LLKIDQSFVRDMLDDADDLAIIEGIISLASAFGREVIAEGVETVAHGEKLLSLGCKLAQG 669

Query: 938 SHVASPLGFNSILKLLKERFP 958
             +A P+    I + +K   P
Sbjct: 670 YGIARPMPAEEIPQWVKSWQP 690



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
                + W      +       I     +  G + G    W   IH +D        +S 
Sbjct: 4   EAIPQLAWTATPAGEYSYVNQRIVDFCDVPYGDLLG--AGWQSLIHPDDVIRAIDAWNSA 61

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +         +FR++  D  + W   +  PM   +G I  + G   DI+++K++ E  
Sbjct: 62  I-NIAKPFVIDFRLKRRDGIYIWCFCQAFPMFGEHGKITEWFGTYTDISDRKQAEEEQ 118


>gi|126656732|ref|ZP_01727946.1| hypothetical protein CY0110_23876 [Cyanothece sp. CCY0110]
 gi|126621952|gb|EAZ92660.1| hypothetical protein CY0110_23876 [Cyanothece sp. CCY0110]
          Length = 873

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 223/434 (51%), Gaps = 11/434 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+ NR+S   +L  +   S         V+ ID+D++K IND LG   GD +L+
Sbjct: 436 YHDPLTGLANRRSLERKLQQLNYKSINQQPELVAVIFIDVDRFKSINDGLGHQAGDYLLI 495

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++++ + E L   + L R+ G+ F I L    +  ++  FA  ++++++ P+     EI 
Sbjct: 496 AMSQLLQEHLNSSEPLGRVGGDEFAIWLKPVKDKQEVVRFAKKLQQALSQPLFWQGHEIY 555

Query: 654 VTASIGFASWTSSKITSS--EMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKE 709
           +T ++G + +  +       E+L+ A++AM+ AK        +    + +    R  ++ 
Sbjct: 556 ITVTVGIS-FEETGDNFHGPELLRYADIAMHRAKELNSSRPQIFEPGMDTQAIQRWHLET 614

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL L ++  E  L Y PII L    I G EAL++W+    G +S   F+ +AEE  +I  
Sbjct: 615 DLRLGLQQKEFQLYYQPIISLKTGRIAGFEALVRWNSKTRGFVSPGAFIPVAEETGLIVR 674

Query: 770 INLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           +  ++L    R I  W ++    P + + +N++ +   +  L + ++ ++        R+
Sbjct: 675 LGEWILTEACRQIREWHERFPRNPALIMSVNLSGRQFSEPNLVKQIKTILDSAGIEGDRL 734

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           KL  +ES++M N E +  LL  L+++G+ L++DDFGT  S LSYL   P DT+K + S +
Sbjct: 735 KLEITESMMMNNVEEAITLLNGLKELGLRLSIDDFGTGYSSLSYLHRFPVDTLKVDKSFV 794

Query: 889 TGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   ++K I+I+++II +  N+   +IA+ I  E  +K L  + C+Y Q    + P
Sbjct: 795 ERMEDVKDSDKYISIVQTIISLGHNLNLDVIAEGIETEGQMKVLEFLDCEYGQGYLFSRP 854

Query: 944 LGFNSILKLLKERF 957
           L   +   LL +  
Sbjct: 855 LSSENAEALLAKEN 868


>gi|325272741|ref|ZP_08139091.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324102125|gb|EGB99621.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 896

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 148/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S       +         P    I   ++  + G     LP +
Sbjct: 335 RRAAANALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRHLGELPAL 394

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 395 -----ENLNELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT+ K + + I   A+ DNLT + NR +F+  L       A D      ++++DID
Sbjct: 450 IYEDITQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGEHSMCLLLVDID 506

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L    ILAR + N F ++L +          A
Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDN-TILEDGQGVA 565

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           + + +++  P+ +  + I VTAS+G A         + ++KNA LA++ AK  G + V+ 
Sbjct: 566 LQLLRTLDKPMFVDNQLINVTASVGLAYAPLHGSDPASLMKNAGLALHKAKANGKHQVQV 625

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++GLEAL++W+HP+ G I
Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +  R +        M  + + IN++ K   D +L  
Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQSCR-MSQELRAGGMGNLHVAINLSPKQFSDPDLVA 744

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859
            + +++ +             E++                  E +   L  L+ +G++L 
Sbjct: 745 SISSILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLEELKALGLTLA 791

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  ++I MA N++  ++A+ 
Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVIAMAHNLKLKVVAEG 851

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+    + + LK R+P
Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891


>gi|152997313|ref|YP_001342148.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150838237|gb|ABR72213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinomonas sp. MWYL1]
          Length = 806

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/568 (22%), Positives = 245/568 (43%), Gaps = 25/568 (4%)

Query: 400 IFSDGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             SD ER        +  + D +   D              +L + S  ++      L  
Sbjct: 235 ALSDLERSDSHTKAMIEHAADGILLLDENYQITLVNAAAEHMLKMKSEDLNSKS---LDV 291

Query: 456 IH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +H  +    F  IL+S        ++  +R++        + IR+      +      + 
Sbjct: 292 LHSPSSWPEFFNILESLEVNSPTTVETIYRMQ---GIELPVEIRLAKYKVQDK--TETLL 346

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVMVIDI 573
           +  D++E+K++   I   A+ D++T +PNRQ   D+L   +     +       V+ +D+
Sbjct: 347 LIRDVSERKETEARIHHLAYYDSVTNLPNRQYLADKLYKAIKTKQKNTTSSYSAVVFMDL 406

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SL 628
           D++K IND LG  VGD +L  +  ++  L +   + AR+ G+ F  +L    +       
Sbjct: 407 DRFKTINDSLGHNVGDQLLCCVATQLSSLTEENIVFARMGGDEFAFLLTHVGDDKEKVEK 466

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            I  F  ++  +          E+ +TAS+G   +  ++ ++  +LK A+ A+Y AK  G
Sbjct: 467 AINGFVESVMYACQQVKKAGHHEVHITASLGATIFDGNEGSAEAILKQADTALYRAKESG 526

Query: 689 GNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    ++          ++ +  L  A E     L Y P     + E++G EALI+W  
Sbjct: 527 RNTFALYKPEMQAVSDARLEMEKALHHATEFKLFELYYQPQTNDKN-ELIGAEALIRWKD 585

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDL 805
            K G IS +EF+ +AEE+ +I  I  ++L      + +W  +        + IN++    
Sbjct: 586 EKKGFISPAEFIPVAEEIGLIVEIGHWVLNEALSQVATWLKEGKWQLSWRMSINVSPIQF 645

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                   ++  + K    PS + L  +E++++ +       +  ++ +G+ L++DDFGT
Sbjct: 646 QQAGFLPMLKTQLEKHDVPPSCVDLEITENMLLNDLSSCLKKMNAIKALGVHLSIDDFGT 705

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL  +P D +K + S +      +   AI+ ++I MAK +  +++A+ +   + 
Sbjct: 706 GYSSLKYLKSLPIDRLKIDQSFVRDLLTDKSDEAIVHAVIAMAKALNISVLAEGVETLLH 765

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
              L  + C Y Q  +   P+  N  + 
Sbjct: 766 YNRLREIDCFYYQGYYFGHPVPPNEFIA 793


>gi|229171330|ref|ZP_04298917.1| Sensory box/GGDEF [Bacillus cereus MM3]
 gi|228612149|gb|EEK69384.1| Sensory box/GGDEF [Bacillus cereus MM3]
          Length = 689

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 245/549 (44%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     +H        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISMDSIGRITYANPATYEIFGYRYEELHNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  R  ++  + +    +    ++ +R  P+   N +I+    +  D+T Q  + 
Sbjct: 207 IFKGALQGRAKQIVSK-KYVHKEGYELYISLRTIPII-VNAEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     +DN    ++ ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNVFL-----NDNTEFALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +     ++   A ++ K I+    
Sbjct: 320 EGDKVLQKVTECLSSLQIDGMHLFREHDDQFVMLIENIT-KERVEIVAKSILKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E  L Y P + +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFCLYYQPQMNIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  +M + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALM-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSKYDVEN 685


>gi|288959257|ref|YP_003449598.1| signal transduction protein [Azospirillum sp. B510]
 gi|288911565|dbj|BAI73054.1| signal transduction protein [Azospirillum sp. B510]
          Length = 746

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/448 (27%), Positives = 211/448 (47%), Gaps = 12/448 (2%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DI  +++  E +   A  D LTG+ NR    DRL   +  S     L   ++ ID+
Sbjct: 276 ALETDIALRRRYEEQLYRQAHFDELTGLANRLLTRDRLEQAIVNSRR-GQLTSALLFIDL 334

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND LG   GD +L +   R+  +++  D LAR+ G+ F ++L     +      
Sbjct: 335 DNFKNVNDTLGHEAGDRLLKAAAGRLSTIIRQGDTLARMGGDEFLVVLPCIAGTDAARGV 394

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +   P  +  ++  VTASIG A + +      +++++A+LA+Y AK RG N  E
Sbjct: 395 AERVLDAFVPPFRIGGQDHFVTASIGIALFPTDGADGPDLMRSADLALYRAKERGRNRYE 454

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL------MDEEIVGLEALIQWD 745
            F        +    ++  L LA++ SE  L Y PI+R           ++ LEAL++W 
Sbjct: 455 FFTAEINERAQRRIALEGRLRLAIQRSEFVLHYQPILRAGGPAGGEGHRLIALEALLRWR 514

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P     +  +F+ +AEE+ +I  I  +++E    + +         P  + +N++ + L
Sbjct: 515 QPDGSLTAPGDFIGVAEEVGLIGEIGAWVIETAIHETVGLFGIGPSAP-RVAVNVSPRQL 573

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D      +   +S+    PSR++L  +E V+MG        L RL   GI L++DDFGT
Sbjct: 574 RDPSFVAHVVGALSRHGLPPSRLELEITEGVLMGEAPEVAEALHRLCDHGIRLSIDDFGT 633

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFD +K +   ++       A  ++ +II MA  +    IA+ +  E  
Sbjct: 634 GYSSLSYLQRYPFDMLKIDRCFVSEMCGGAAAARLVEAIIAMAHGLGLETIAEGVETEEQ 693

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
            + L   GCD +Q   +  P+    I  
Sbjct: 694 FRFLRSRGCDLMQGYLLGRPVPLADIAA 721


>gi|327481857|gb|AEA85167.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 686

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 215/451 (47%), Gaps = 5/451 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I +++  ++++   +      D+LTG+PNRQ    +L  ILD +      R  V+ + +
Sbjct: 231 SIEHNMHLRQEAESSLHRMTQYDSLTGLPNRQQLQSQLDHILDEARRLQR-RVAVLCLGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L  L  R+ E       LARL G++F ++L       + A+ 
Sbjct: 290 DDFKGINEQYSYQAGDCLLKGLADRLRESAGRLGALARLGGDQFVLVLSGIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A A+   +  PI+L    I + A+IG   +      + ++L+ AE  M  AK R  N  +
Sbjct: 350 AQAVLDDLDNPIDLDGHPIRLRATIGITLYPEDGDNTEKLLQKAEQTMTLAKSRSRNRYQ 409

Query: 694 SFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A++ +E +LVY P +      I G+EALI+W HP+   
Sbjct: 410 FYVASIDSQMRARRELEKDLSEALKRNEFHLVYQPQVDYRQNRITGVEALIRWKHPQGKL 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+   I  I  ++L++    +  W  Q     + + +N+++  L   +L 
Sbjct: 470 VPPDLFIPLAEQNGSIIEIGKWVLDQACSQLRQWHAQ-GHTGLRVAVNLSTVQLRHPQLP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+         ++L  +E+ +M + + +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 AMIGELLQAHQLPAETLELEVTETGLMEDIDAAAHNLHSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           YL  +P D +K + S +    +     I+R+II + K++  T+IA+ +        L   
Sbjct: 589 YLKSLPLDKIKIDKSFVQDIGQDEGATIVRAIIQLGKSLGMTVIAEGVETPEQEAYLIAE 648

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           GC   Q  + + PL    +  LL++  P  +
Sbjct: 649 GCQEGQGYYYSKPLPARDLDLLLRQSAPFDR 679


>gi|241765471|ref|ZP_04763437.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
 gi|241364756|gb|EER59749.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
          Length = 524

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/515 (24%), Positives = 235/515 (45%), Gaps = 9/515 (1%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510
           W   +  +        +     +        ++V A      W+    + +  +++G   
Sbjct: 1   WNAAVAADALPGISAEVARHAAHPATPFDATWKVAAPHAPARWVRNLGKIVSHDAHGQPT 60

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +G+A D+T Q++  E +   A  D LTG+PNR      L   +  +  +   R  V  
Sbjct: 61  RMLGVAMDVTPQREQEELLQKLAHYDALTGLPNRVLLAKLLQDRMAETRAN-GTRLGVAY 119

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +ND LG   GD +LV +  R+   L+  D +ARL G+ F I++    +  + 
Sbjct: 120 LDLDGFKPVNDRLGHGAGDRLLVVVAGRLSRALRPQDCVARLGGDEFVILMPGLASPAEG 179

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +  SI+ P +L    ++VTASIG+  +      +  +L++A+ AMY AK  G N
Sbjct: 180 EQLLQRVMDSISPPYSLEGERVSVTASIGYTLFPLDDADADALLRHADQAMYAAKQAGRN 239

Query: 691 HVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F     R+ R   +  + L  A+   E  L   P + +    +VG E L +W HP+
Sbjct: 240 RFHQFDAEQERAQRAQREQGQQLRDALARGEFVLFLQPKVAMQAGVVVGAETLARWQHPE 299

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S + F+ + E   +  A   +++E     +           + + INI+++ L   
Sbjct: 300 RGLLSPAAFLPLVESTGLELAFGEWVVETALAQLEQLILAGLQ--LPLSINISARQLQQP 357

Query: 809 ELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              + M   +++      + ++L  +ES  + +       L RLR +G++++LDDFGT  
Sbjct: 358 GFADWMLERLARHPQVPATLVELEITESAALYDLPAVTGTLARLRALGMAVSLDDFGTGY 417

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P DT+K + S + G       +AI++ +I +A++    +IA+ +      +
Sbjct: 418 SSLTYLRNLPMDTLKIDQSFVHGMMTDPGDMAIVQGVIGLARSFGCKVIAEGVETVEQGQ 477

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            L +MGC + Q   +A P+ F+     +    P  
Sbjct: 478 MLQQMGCAHAQGYGIARPMPFDRFAGWVAHWQPPA 512


>gi|228983752|ref|ZP_04143949.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228775947|gb|EEM24316.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 689

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/550 (21%), Positives = 243/550 (44%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+   + +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYKKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKRSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNDFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   A +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGMHLFREHDDQFVMLIENIT-KERVEVVAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + E ++ ++ASIG             + +  + A+  AK +G  H   +           
Sbjct: 379 IEEEDVYLSASIGIVMAPRDGEDEKILFQRVDAALEKAKDKGKGHYHFYCSGLDSEREQR 438

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +  ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLHYQPQINIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|30577817|emb|CAD90949.1| LssE protein [Legionella pneumophila str. Corby]
          Length = 840

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 149/809 (18%), Positives = 320/809 (39%), Gaps = 69/809 (8%)

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252
            I+   A    +                  ++   +  ++    GF   ++++  G   I
Sbjct: 54  AIVYNTALCFIVLSLAILFSLNC---YYKSSLILGITVFVFSGLGFSQHILDVNLGIDEI 110

Query: 253 WRACSEI--------ALSSSLIIFLFMY-------LHWNRWHAKVGYITFSGIACIAILF 297
           +                +++   FL +        L   R            +     + 
Sbjct: 111 FFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAIL 170

Query: 298 CMSFY-------------YPMVTASIARITLASIVLYYTYFIIYHGMKGYER-AVLLIPA 343
            +S Y              PM   +     + S      Y+      +     A+  + +
Sbjct: 171 FISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCS 230

Query: 344 WILIFIWFIGL--WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
           + ++  + +     +    RL+        V G + +  L G  +    LA        +
Sbjct: 231 FCIMLTFTLLSFEILEKENRLNLSFSIATFVIG-IFVSFLFGLVIRLWQLAKLSAIAAKY 289

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------------GSMHGPI 449
           +  E     +  + D +   D   + +        +                   ++  +
Sbjct: 290 AFLE-VEATLESTADAILVVDKEGNVINYNQRFLDMWRQRINPPRIINYLDIKEEINKQL 348

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            N    IH          ++  + +   +  +E R++      ++         + +  I
Sbjct: 349 VNKREVIH---------RINQTIKHPDHQNSFELRLK---GNLYYDCYTQPLKLDED--I 394

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  +    DIT  K+    +   +  D LT +PN+   +D L   +  + +D  +   V 
Sbjct: 395 IGRVWSFRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKI-VGVY 453

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D++ +INDV G + GD+++  + +R+ + +    IL R+SG++F I++ S +   +
Sbjct: 454 LLDLDRFTQINDVFGHSKGDEIIKIIAKRLKDCVPVEHILGRISGDQF-IVIASLDEIRE 512

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +  +   P+ +      ++ SIG  S+     T   +L  A++A+   K  G 
Sbjct: 513 AVLGVTRLLAAFHEPVIMNSHCTKMSCSIGVPSYPRDGNTVDVLLPKADIALSRPKIEGR 572

Query: 690 NHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N+ +S+           ++++ +L  A+   E  L Y PI+ L    + G EALI+W+HP
Sbjct: 573 NNSQSYTRDMNTYTLEHILLENELRNAIRKRESVLYYQPILELRSLNLNGSEALIRWNHP 632

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +   +F+ +AEE+ +I  I  ++L  + + I +W+ Q     +   +NI+ K L  
Sbjct: 633 RNGLLLPEKFIQLAEEIGIISEIGDWVLRTVCKRIKTWKKQGVN-NLKGAVNISPKHLKF 691

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++S++      I+L  +E++++         L  L++IGI +++DDFGT  
Sbjct: 692 RHLPIRINEILSESQVKSESIELELTENILIDKSSGIIDTLNELKEIGIKISIDDFGTGY 751

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D +K +   +      +   A++++II MAKN+   +IA+ I  +  ++
Sbjct: 752 SCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIAEGIENKYQLE 811

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            L  +GC Y Q  +   P+  +  ++ L+
Sbjct: 812 ILQNLGCHYGQGYYFYHPMPPDKCMQFLQ 840


>gi|262163932|ref|ZP_06031671.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223]
 gi|262027460|gb|EEY46126.1| hypothetical protein VMA_000372 [Vibrio mimicus VM223]
          Length = 684

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 135/574 (23%), Positives = 259/574 (45%), Gaps = 36/574 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG         +   L 
Sbjct: 125 LVRSLEESENKYALLTTLLPDGLMM--VENDCIISANPSAARLLGF--EDTQKLLGENLS 180

Query: 455 YIHINDRDN--FRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            + I+++    F + L S +  +        R  +E +V+               +  S 
Sbjct: 181 RLFIDEKTKTVFSSQLASLLTEKPLICLTGPRCGFERKVQLHAGS--------TSILGSQ 232

Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +   
Sbjct: 233 SQLI----LLQDADEAPKQLSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETP 283

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    
Sbjct: 284 LVLLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPE 343

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++      A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK
Sbjct: 344 HNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAK 403

Query: 686 HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++
Sbjct: 404 ERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVR 463

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +
Sbjct: 464 WKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPE 522

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDF
Sbjct: 523 QFGNPQLIDYLEKLLRTTGLDPNCITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDF 582

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +
Sbjct: 583 GTGYSSLAYLARFPIDELKIDRAFISDIDTLPKQLTVIENIINLGRSLSLTVVAEGVETQ 642

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                L+ + C  IQ  H   P   + + +L  +
Sbjct: 643 QQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|153869654|ref|ZP_01999199.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152073882|gb|EDN70803.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 581

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/546 (23%), Positives = 248/546 (45%), Gaps = 21/546 (3%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                 T LG+   ++ G     LP+     ++   +  +      +      E +++  
Sbjct: 29  INQTTLTFLGIQRETVEGSYFWTLPWATPCEEKTQGQLKMAIASAGQGNFAHCEVKIQKH 88

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           + Q   +   + P+ N +G  +  +    D++E +   + +      D LTG+PNRQ F+
Sbjct: 89  NGQLTILDFSLTPVKNVHGKTIWILAEGRDLSEHRVLEQRLTDMNLHDQLTGLPNRQLFM 148

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK---- 604
           D L   L  +         V+ +D+D++K  N  LG  +GD +L+ + +R+   L     
Sbjct: 149 DYLDKALMRTKQHQKTTFAVLFLDLDRFKVTNISLGHDMGDWLLMEVAQRLQNCLNNFRG 208

Query: 605 ----------FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
                       DILAR  G+ F I+L + ++  +    A+ + K +A P  +   +I  
Sbjct: 209 KSFCFTKTFASKDILARAGGDEFLILLENISDITEANRLAVTINKVLAKPFLIDRYKIMT 268

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLC 712
           +ASIG   + +S+    E+L++A+ AMY AK  G +    F   +      R+ I+ DL 
Sbjct: 269 SASIGIV-YRTSQQEGMELLRDADAAMYRAKALGKSGYAIFSPGMREEAISRLQIEMDLH 327

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ N    L Y P   L   ++VG+E+LI++ HP+ G I   EF+ + E+  +I  I  
Sbjct: 328 QAIVNKNFVLFYQPQTELYSNQLVGIESLIRFHHPENGLILPMEFLPVLEDTGIIIPIGE 387

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+   + + +W +   +    + +N++        L + +   +  +  +P  ++L  
Sbjct: 388 WILQTACQQLKTWLEAGLLIE-RVAVNLSPYQFRSKNLLKRVADALENSGIAPESLELEI 446

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES+++ + + +   L   + +GI + +DDFG   + L Y+   P D +K + S + G  
Sbjct: 447 TESLLLKDIDSAIKTLKSFKDMGIRVIIDDFGMGYASLDYIKRFPADGIKIDNSFINGII 506

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            + +   I  + I MA  +  T++A+ +        L   GCD  Q    A+P+   + L
Sbjct: 507 SSPEDATITVATIDMAHALGLTVVAEGVETVEQRDFLRDHGCDLAQGLFYAAPMKNTAFL 566

Query: 951 KLLKER 956
           +  ++ 
Sbjct: 567 EWSQQY 572


>gi|163938473|ref|YP_001643357.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
 gi|163860670|gb|ABY41729.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus weihenstephanensis KBAB4]
          Length = 689

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 239/549 (43%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     +         +I+      F+ 
Sbjct: 149 FKSLLEYNNDSIISVDSIGRITYANPATYEIFGYRYEELKDQFI--FQFINKEYEKTFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I  + +  R  ++  + +    +    ++ +R  P+   N +I+    +  D+T Q  + 
Sbjct: 207 IFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIPII-VNSEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L  +         ++ ID+D++  IND  G  
Sbjct: 265 MKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE-----FALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  + +L      L R   ++F +++ +      + + A  + K I+    
Sbjct: 320 EGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLIENIT-REYVEEVAQTILKKISGHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG        +    + +  + A+  AK +G  +   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAALEKAKEKGKGYYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E  L Y P I +   ++  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFSLYYQPQINIETGKMASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++   I  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVHQVCEQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 PHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +   +IA+ +     I+ L       +Q      
Sbjct: 617 RSFMEGIYKDERDTNITAAIIHLAHTLGLNVIAEGVEKAEQIQFLKEKNVKIVQGYFYNR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSIYDVEN 685


>gi|218234545|ref|YP_002365345.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
 gi|218162502|gb|ACK62494.1| sensory box/GGDEF family protein [Bacillus cereus B4264]
          Length = 689

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|159186248|ref|NP_356033.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159141382|gb|AAK88818.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 779

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 154/778 (19%), Positives = 302/778 (38%), Gaps = 59/778 (7%)

Query: 191 YRGIIIGVASLLAIFLTIF---YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS 247
               +I +  + A F  +                 A     L   +  F  +        
Sbjct: 18  LLAAVICLLGMFAFFHLLLRADESPAGRKPYWVLVAAFAAGLSVWATHFVAMLAYRGAVP 77

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC--------- 298
                +      AL+              R  A    +    +  +++            
Sbjct: 78  IGYDFFFTALSAALAVFGFWLAL----VARSQAIYSSLIVGTLVTLSVAVMHFVGMAGMD 133

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           ++         +   +  S   +   F ++  +  ++R      A I          M+ 
Sbjct: 134 VAATISYRWGPVFGGSAVSWAAFVLAFFLFRRLASWKRIAAPAGAAIFGICALHFTAMSA 193

Query: 359 T---------KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           T             +++ +  ++G +  +  LI F      L   Y              
Sbjct: 194 TVLTPDPSMSGPDPDNVGRLIMIGAISGVTFLILFATAVAALVDRYLVD--------LKG 245

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V  + D +         V      A +LG    S+ G           +D         
Sbjct: 246 LVDATLDGLAVVR-DGRIVELNTRFAGLLGREEASLVGRN--------PDDLFKAVDGQP 296

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +++  R   ++    +R    Q     + +R +    G     + I  D+TE++++   I
Sbjct: 297 TYLS-RPAPVEA---IRERGGQAQVFELGVRTI-EYRGRPCEVMAI-RDLTEKREAQREI 350

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR  F  RL   +D    D+     ++ +D+D++K +ND+ G A GD
Sbjct: 351 EYLARHDVLTGLSNRTMFQTRLHQQIDNG--DEEDEFALLALDLDRFKAVNDIFGHAEGD 408

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL  +   + E  +  D++ARL G+ F I+      + +    A  +    A+ +N++ 
Sbjct: 409 RVLKKVAAILDECARAGDVVARLGGDEFVILTARHTKADEARLLAETILGMFALKMNVVN 468

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMI 707
               V  SIG A +         ++  A+LA+Y AK  G   +  +   +     +R  +
Sbjct: 469 DPTAVGVSIGIAVFPRDGQDHESIMHAADLALYRAKMGGRGILAFYDPLMDQEARERRQL 528

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL LA+   EL L Y P++ +   ++VG EAL++W HP  G +    F+ IAEE  +I
Sbjct: 529 ETDLRLAINRDELVLNYQPVLSVECGQVVGYEALVRWQHPTRGVVPPDVFIPIAEESGII 588

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            ++  ++L    R   +W      P + I +N++        L   +  ++ +T  SP+R
Sbjct: 589 ISLGEWVLREACRQASTWA-----PHLKIAVNVSPLQFSLANLGHVVCTVLMQTGLSPNR 643

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E+ ++ + + + ++L +L+ +G+++ +DDFGT  S LS L   PFD +K + S 
Sbjct: 644 LELEITEAALLKDRKATLVILNQLKALGVAIVMDDFGTGYSSLSNLQSFPFDKIKIDRSF 703

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +   +E     AI+R++I + ++++  + A+ I  +   + +   GC   Q      P
Sbjct: 704 IAAMSEDDNARAIVRAVIGLGRSLDLPVTAEGIETDAQYRMVVDEGCAQAQGYLFGRP 761


>gi|229148886|ref|ZP_04277132.1| Sensory box/GGDEF [Bacillus cereus m1550]
 gi|228634585|gb|EEK91168.1| Sensory box/GGDEF [Bacillus cereus m1550]
          Length = 689

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/550 (22%), Positives = 255/550 (46%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 320 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 379 IKEEDVYLSASIGIVMAPADGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++ + +  W ++     + I +NI+++      L E +   ++K   S
Sbjct: 499 GFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVS 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  IIA+ +  +  I+ L       +Q  + + 
Sbjct: 617 RSFMEGIHIDERDTNITAAIIHLAHTLELNIIAEGVEKKEQIQFLKEKNVKLVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|330972079|gb|EGH72145.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 732

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/587 (21%), Positives = 229/587 (39%), Gaps = 18/587 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     +I   +     +        R       S D +   D     ++       I 
Sbjct: 147 VLQDLAVMIIERMELRRLTLENEDSHSRFMNITSTSPDAIICSDSKNRIISWNNSAEIIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  S    G   +    I    R      L          +            D     +
Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAVHRDGHTIPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +     S G+      I  DIT++ ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLS-QWTSAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  L   +++ID+D +K +ND LG A GD VL   + R+ E +    +++RL G+
Sbjct: 323 -----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +  K     + +   I  PI   +  I + ASIG +    S     +ML 
Sbjct: 378 EFVVFLSETADPDKAIKLGLELIAVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSPVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP    +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLCVVSPAVFLPALEASLLAVPVGEWILRSACEQAAQWRNTGCEE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ +++ +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERF 957
            + A+ I        +    CD  Q      P+  +    + +    
Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTKRYISSHN 723


>gi|296536548|ref|ZP_06898634.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296263125|gb|EFH09664.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 475

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 218/469 (46%), Gaps = 8/469 (1%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R A  +   ++     +    G   R + I  DI+E+K + E +   A  D LT +PNR 
Sbjct: 10  RDAGGRERTLLSTAVAVRGGRG-AGRVVFIGLDISERKAAEERMRHLAEHDPLTDLPNRL 68

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  RL   L  +    +    +  +DID++K +ND LG  VGD +L++   RI   L+ 
Sbjct: 69  LFGLRLNAALAKAREGHSPGFALHCLDIDRFKTVNDRLGHPVGDRLLLAAVERIRGCLRR 128

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D LAR+ G+ F +I    +        A  + K +  P  +    I    SIG A    
Sbjct: 129 ADTLARIGGDEFAVIQAEVSGPQDAISLAARLVKVMQAPFRIDGSVIESGLSIGSALGLL 188

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLV 723
               +  + + A++A+Y AK  G      F          R  ++ +L   +E  EL+L+
Sbjct: 189 HGGHAELLQQRADVALYRAKAEGRGGAVLFDPGMETALQQRREMEAELRRGLEAGELHLL 248

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P   L     VG EAL++W+H   G I  + F+ +AEE  M   +  ++L       +
Sbjct: 249 YQPKFCLQTGRPVGCEALLRWEHAARGAIPPALFVPVAEEAGMAATLGRYVLRAACGQAL 308

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            WR+      + + +N+++     ++    ++  ++++   P+ +++  +E V + N E 
Sbjct: 309 RWRETG--LALPVAVNLSAMLFASDQAVALVREALAESGLPPALLEIELTEGVFIRNAEA 366

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILR 900
           +R  L  L ++G+ + LDDFGT  S L+YL  +PFD +K + + +   T        I+ 
Sbjct: 367 ARQALQALHRLGVRVALDDFGTGYSSLAYLQRLPFDVLKIDRAFVRDLTAPEHGSARIVE 426

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +I+ +A  +   ++A+ +     +  L R+GCD +Q   +  P+   ++
Sbjct: 427 TILRLAHGLGAKVVAEGVETPEQLAALRRLGCDAVQGFLLGRPMAAGAV 475


>gi|146338270|ref|YP_001203318.1| putative diguanylate cyclase/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
 gi|146191076|emb|CAL75081.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 789

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/684 (18%), Positives = 283/684 (41%), Gaps = 27/684 (3%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           RW  +           + +   ++                  +     ++     + Y R
Sbjct: 103 RWEIRYQIGAMLYALVLGVWCVVAVVDNSDPVVH-----LIAISVTLCYMSAGAGRTYGR 157

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
             +     IL+    + + +A+       +   A      + +  I   + +  +     
Sbjct: 158 PWIF-HVQILLACGPLAMALALHG-SPYYMGMAAFCVLFFMSLKHISTNLQRIFVQAFVA 215

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +G  +  ++   A+      +  +               ++ L    +    +     I
Sbjct: 216 REGEAALAKQFDTALNNMPHGLCMFGPDGRLAVMNHRFGEMMSLPEDILQRGGKA-ADII 274

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF---HWMIIRIRPMSNSNGDILRYI 513
           +        +     +            +  +D        +    +PM++        +
Sbjct: 275 NACVISGAISAPSGRMILSEIEHTKTHNIITSDPDIVRDRSLSWTFQPMADG-----GAV 329

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DITE++ +   I   A  D LT +PNR SF D +  +L +      L   ++ +D+
Sbjct: 330 VLLEDITERQHAEARISHLARYDELTTLPNRVSFRDEIERLLKIPQRHGELS-ALLFVDL 388

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K++ND LG   GD +L +++ R+ ++L+  D +AR  G+ F +   +  ++   A  
Sbjct: 389 DRFKQVNDTLGHPCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRNIRSNDDAAVL 448

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   ++    +    + + AS+G A  T+  I++  +LKNA++A+Y AK  G     
Sbjct: 449 ARRIVDQLSERYKIDNHLVEIGASVGIAM-TAPGISADTLLKNADMALYRAKAEGRGTFC 507

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            FR    ++      ++ DL  A+ + E  L Y P++ L   +I   EAL++W+HP  G 
Sbjct: 508 FFRDELAQTVEARRILELDLRKALASEEFELFYQPLVNLKSGKISTCEALLRWNHPVRGT 567

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  + + +AE++ +I  +  ++L +   + + W +      + + +N + +     ++ 
Sbjct: 568 VSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPEA-----VSVAVNFSPQQFHQRDVL 622

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  +  +   P R+++  +ES ++ N + +  +L +L  +G+ ++LDDFGT  S LS
Sbjct: 623 SEVRYALEVSGLPPHRLEIEITESSLLRNTQLTHDVLSQLHMLGVRISLDDFGTGYSSLS 682

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           YL   P + VK + S + G    R   +LR +  ++ ++  +++ + I     ++ ++  
Sbjct: 683 YLHNFPLEKVKIDRSFLEGIDSDRPLTLLRGVARLSADLGMSVVVEGIETNEQLELVSVD 742

Query: 931 G-CDYIQDSHVASPLGFNSILKLL 953
           G     Q    + P+    I +LL
Sbjct: 743 GTVTEAQGYLFSRPVPAVRIRQLL 766


>gi|313496702|gb|ADR58068.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida BIRD-1]
          Length = 896

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 146/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S       +         P    I   ++  + G     LP +
Sbjct: 335 RRAAASALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLGELPAL 394

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 395 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+T+ K + + I   A+ DNLT + NR +F+  L       A D      ++++DID
Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESSMCLLLVDID 506

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L    ILAR + N F ++L  + +       A
Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLL-DDTSLEDGQGVA 565

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P+ +  + I VTAS+G A      +  + ++KNA LA++ AK  G + V+ 
Sbjct: 566 QQLLCTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 625

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++GLEAL++W+HP+ G I
Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 685

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +    +     +A +  + + IN++ K   D +L  
Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQAC-CMSQQLRKAGLGNLHVAINLSPKQFSDPDLVA 744

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859
            +  ++ +             E++                  E +   L  L+ +G++L 
Sbjct: 745 SISTILKE-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 791

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  +++ MA N++  ++A+ 
Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 851

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+    + + LK R+P
Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891


>gi|116048784|ref|YP_792416.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584005|gb|ABJ10020.1| hypothetical protein PA14_53140 [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 823

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 219 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 278

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 279 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 337

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+    G+I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 338 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 396

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 397 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 455

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 456 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 515

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 516 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 575

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 576 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 635

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 636 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 695

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 696 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 755

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I  +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 756 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 801


>gi|260222135|emb|CBA31398.1| hypothetical protein Csp_F37330 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 666

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/587 (22%), Positives = 255/587 (43%), Gaps = 19/587 (3%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +   + L  I +    +  +  +            R   A+L +  ++  +D     +  
Sbjct: 97  VSMNMQLSGIRLTDGRMAMLCESRIIEPDRPEAL-RSVEALLHTDVMITLYDREGVVLYR 155

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            P           S+              D +    +L     +    L           
Sbjct: 156 NPAA-------RESVPNLNMRMAERF--QDIEALERMLAMLELHGEATLTLP---AHTTR 203

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  + +R   ++       +    D+T  K + +     A  D+LTG+PNR   + R
Sbjct: 204 NLRWHEVSVRLCRDAVPGRDAVLMSEVDVTAIKHAQDHSQYLARHDSLTGLPNRSHVMQR 263

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
               L            ++ ID+D +K IND LG A GD +LV +  R+  + +  D++A
Sbjct: 264 FADTLRDMGE-GATEAALIYIDLDHFKDINDTLGHAAGDALLVQVAERLRAITRSSDMVA 322

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ F I+++S N   ++      +  ++A PI++   E+ VT S+G + +       
Sbjct: 323 RLGGDEFLILMVSHNIREEVDLVRRRLSSTVAQPIHIHGAEVIVTPSVGVSFYPEHGKEL 382

Query: 671 SEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             +L+NA+LAMY AK  G N +  F   ++     R+ ++ +L  A+   E  L Y P +
Sbjct: 383 DTLLRNADLAMYSAKESGRNALNIFESPMAQRVQQRLELETELRHALTRQEFELYYQPRV 442

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +   ++ G EALI+W+HP+ G +    F+   E   MI A+  ++ E+ AR  + W  +
Sbjct: 443 DVATGQVRGAEALIRWNHPQRGLVGPDAFIPTCESTGMINALGDWVFEQAARQQVQWARE 502

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + I +N++ +   D EL   +  +++ T   P+R++L  +ES+++G    +   L
Sbjct: 503 GLD--LKISVNLSPRQFRDPELLNRLARIVTATAAQPARLELELTESMLLGVAPHTHETL 560

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN 908
             LR++G S+++DDFGT  S L+YL   P   +K + + +    E    +   I+ M + 
Sbjct: 561 DDLRRMGFSISVDDFGTGYSNLAYLNRFPIQVLKVDKTFVQDI-EANRPVAELIVSMCRL 619

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  I+A+ +     ++ +   G    Q    A PL   + ++ ++ 
Sbjct: 620 MQLHIVAEGVETPAQLEWVQTQGIGQYQGYLFAKPLPATAFVERVRA 666


>gi|299132025|ref|ZP_07025220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Afipia sp. 1NLS2]
 gi|298592162|gb|EFI52362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Afipia sp. 1NLS2]
          Length = 798

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 164/776 (21%), Positives = 306/776 (39%), Gaps = 47/776 (6%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
             +        I  G+ S    F+ +                A  ++  + +  G L  +
Sbjct: 46  RHIWLAVSAVAIGFGIWST--HFIAMLAFSPGIPSGYNIALTAISLVVAMLLTGGGL--V 101

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
           V +  G          I       +                + T      IA +    F 
Sbjct: 102 VAMIPGWSAGPALGGAIVAGGIAAM----------------HYTGMAAFEIAGIVVWDFG 145

Query: 303 YPMVTASIARITLASIVLYYTYFII--YHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
               +  +     A  +    +     +         + +             L      
Sbjct: 146 MVAWSIVLGATLGAIALPVGLHDQSEKWKAAGAALLTLAICSHHFTGMAAVTILPDPNIA 205

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                +    L   +    + I    +  V       +    + +R       + + +  
Sbjct: 206 VPATALPPALLAILVCAASLTIILLSLTAVALDVRDRRRAELETDRMRGLANAAVEGLVV 265

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     VT     A ++GL+S    G     L     +D        +  +      + 
Sbjct: 266 CDGDT-IVTVNESFAQLVGLSSAMPVGNK---LDLCLPDDTAR-----ERLLTSSNQPM- 315

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E  +R  D       + +RP+ +  G     + +  D+  +KK+ + I   A  D LT 
Sbjct: 316 -EVTLRHHDGSMIPAEVILRPI-DYAGRPHHVVAV-RDLRARKKNEQHIRYLAHHDALTS 372

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR SF   +   L     D+     V+ +D+D++K++ND+ G A GD VL ++  RIG
Sbjct: 373 LPNRTSFNAAIDEALAALPKDNK--LAVLCLDLDRFKEVNDLFGHAAGDRVLQTVANRIG 430

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LL    I++RL G+ F I+L +   +     FA  +  ++ +  +  E +  +++S+G 
Sbjct: 431 GLLGSGQIMSRLGGDEFAILLPNIARADAARRFAENVLAALRLKGDTPETD-GISSSLGI 489

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS 718
           A +         +L +A+ A+Y AK  G N    F         +R MI+ DL  AV  +
Sbjct: 490 ALYPDDANDRQMLLSHADTALYRAKTEGRNTYRFFEAKMGAEVRERRMIEHDLRHAVARN 549

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL LVY P   + +  + G EAL++W HP  G++S + F+ IAEE   I  I  ++L   
Sbjct: 550 ELRLVYQPQHDIQNNIVTGFEALLRWKHPTRGDVSPATFIPIAEEAGAILGIGEWVLRTA 609

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R+  SW       P+ I +N+++  + D      +  ++ +T  SP+R++L  +E+ ++
Sbjct: 610 CREAASWPQ-----PLTIAVNVSTLQIYDPNFAHLVHRILIETGLSPNRLELEITETALV 664

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRI 896
            +  R+ L L +++ +G+ + +DDFGT  S LS L   PFD +K +GS +    S E+  
Sbjct: 665 RDLNRALLTLRQIKALGVHIAMDDFGTGYSSLSNLRAFPFDKIKIDGSFIKSVDSNEQAA 724

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            I+R+++ + + +   ++A+ +    ++K L    CD IQ   +  P    +    
Sbjct: 725 TIVRTVLGLGRGLGLPVLAEGVETAGEMKFLREQNCDEIQGYLIGRPAAIENFRHF 780


>gi|229525306|ref|ZP_04414711.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229338887|gb|EEO03904.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 684

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|220935020|ref|YP_002513919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996330|gb|ACL72932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1301

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/593 (22%), Positives = 255/593 (43%), Gaps = 22/593 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             T I          +   S+ +R   A+      ++  D              + G    
Sbjct: 607  ITDITERKEAEAALRKAHSETQRFREALDYVSSFIYMKDTQSRYTYANRATLELFGTNDH 666

Query: 444  SMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     +      +   +    +D  V +   +   E             +    P+
Sbjct: 667  DLPGSDDFRFFS----DSTAHRLREIDRHV-FLGEQTSEEIEAVDPGGHRRVYLEIKTPI 721

Query: 503  SNS--NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             +     +++  +GI+ DIT  K+    +   A  D LT +PNR    DRL   +  +  
Sbjct: 722  YDETERDEVIGLLGISTDITAIKEHERQLEHIAHFDALTNLPNRVLLADRLHQAMAQAVR 781

Query: 561  DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              +    V  +D+D +K IND  G AVGD +L+++ +++ E+L+  D L+RL G+ F  +
Sbjct: 782  RGH-HLAVAYLDLDGFKAINDRYGHAVGDKLLMAVAQQMHEVLREEDTLSRLGGDEFVAV 840

Query: 621  LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAEL 679
            L+   +          +  + A P+++  RE+ ++AS+G   +  ++   + ++L+ A+ 
Sbjct: 841  LLDLADVEACVPLLTRLLAAAARPVSIEGRELRISASLGVTFYPQAEQIEAEQLLRQADQ 900

Query: 680  AMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVG 737
            AMY AK  G      F     RS R   +    +  A EN E  L Y P + +    ++G
Sbjct: 901  AMYQAKLAGKGRYHVFDAELDRSVRTHHESLERIRSAFENDEFVLHYQPKVNMRSGAVIG 960

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             EALI+W HP  G +   +F+ + E+  +   +  +++ R  + + SW+    +  + + 
Sbjct: 961  AEALIRWQHPDKGLLPPGDFLPVIEDHPLAIELGEWVITRALQQMASWQTAGLV--LPVS 1018

Query: 798  INIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI +  L  +     ++ L+      SP  ++L   E+  +G+      LL + R IG+
Sbjct: 1019 VNIGASQLRQDTFVSRLRTLLDGFPEISPGSLELEILETSALGDLALVTRLLDQCRAIGV 1078

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            ++ LDDFGT  S L+YL  +P   VK + S +       + +AIL  ++ +A      +I
Sbjct: 1079 NIALDDFGTGYSSLTYLKRLPAGVVKVDQSFIRDILMDPEDLAILDGVLGLAGAFNRQVI 1138

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-----RFPLVKN 962
            A+ +        L R+GC+  Q   +A P+   ++   +K       +P ++ 
Sbjct: 1139 AEGVETVEHGDMLLRIGCELAQGYGIARPMPAEALHDWVKRWRPEPHWPRLRR 1191



 Score =  135 bits (340), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 2/149 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q  +        +     R   A+ G+GD VWDW++  + V  +    ++LG     +  
Sbjct: 347 QLTVDIRDREARLSDSEYRWRFALEGAGDGVWDWNLEDNTVYFSRRWKSMLGFEDQEIGQ 406

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506
            +  W   +H +D D+    L  ++   RG    E R+R  D  + W++ R   +  +  
Sbjct: 407 GLDEWQRRVHPDDLDSTLAELKGYLNGDRGEYVSEHRMRCKDGSWKWILDRGMVVSRDGQ 466

Query: 507 GDILRYIGIANDITEQKKSL-EGILCNAF 534
           G  LR IG   DI+ QK          A 
Sbjct: 467 GRPLRMIGTHTDISGQKALEAAREEILAR 495



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 6/137 (4%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV----TTTPDIATILGLASGSMHGPIR 450
                      R          +V+++ +  D        +  I  I  ++   +     
Sbjct: 484 ALEAAREEILARLQTITSRVPGVVYEFRLQADGRSCFPYASEAIRQIYRVSPEEVKTDAS 543

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                +H +D D     +     +     ++E+RV+  D    W+     P    +G  L
Sbjct: 544 AVFAILHPDDYDAVVESIQHSARHLT-PWRHEYRVKFPDGTVRWLYGDSLPHREPDGSTL 602

Query: 511 RYIGIANDITEQKKSLE 527
            Y G   DITE+K++  
Sbjct: 603 WY-GFITDITERKEAEA 618


>gi|92116800|ref|YP_576529.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91799694|gb|ABE62069.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
          Length = 898

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 140/582 (24%), Positives = 261/582 (44%), Gaps = 21/582 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILG 439
           +    + + V      S+ + +  +     V      ++         +       TIL 
Sbjct: 314 VFLIALFEDVTERKSLSRELENAKKFLETVVDNIPVSLIVQCASDGHYLLANRRAETILN 373

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                  G   +        D        D       G L  E  +R ++      + R 
Sbjct: 374 RRREDAIGLTAS--DIFGPRDAKLIVAR-DEMAVGNGGLLTEEHPIRTSEG-LRLFLTRR 429

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +   +G+    I    D+T+++++   +   A+ D LT +PNR +FL  L+ +++ + 
Sbjct: 430 VTVRGDDGEPQYLIKTNEDVTDRRQTESRMAHMAYHDGLTDLPNRTAFLKALSQMIE-AC 488

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +    V+ +D+D  K+INDV G AVGD +L+ + RRI        ++ARLSG+ FG+
Sbjct: 489 QGTDDEFAVLSLDLDGLKEINDVFGHAVGDSLLIEVARRIQSAAH-GGLVARLSGDEFGV 547

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I+            A  +  ++     + ++ +    + G + +       + +L NA +
Sbjct: 548 IIDG-KQPAVGQALAQQIVAAMVPEFLIDDKSVRTGLTTGISLFPRDGTDPASLLANAGV 606

Query: 680 AMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM----DE 733
           A++ AK   RG   V    +     DR ++  DL  A+ N EL L Y P  R      D+
Sbjct: 607 ALFRAKAKSRGSICVFEPEMDRQIRDRRVLHRDLSNAMRNGELSLHYQPQARTGRKLVDD 666

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +++G EAL +W HP  G +   +F+ +AEE  +I A+  ++L    R+  SW       P
Sbjct: 667 DVIGFEALTRWSHPTRGFVPPGDFIPLAEESGLIVAMGEWILREACREAASWPS-----P 721

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N++    +  +L   + +++ +T  +PSR++L  +E V++ + ERS  LL RL+ 
Sbjct: 722 KQIAVNLSPVQFIHGDLVGLVHSILLETGLNPSRLELEITEGVLIEDFERSLALLRRLKA 781

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIET 911
           +G+ + +DDFG+  S LSY    PFD +K +   +   G   +  AI+R++I +   ++ 
Sbjct: 782 LGVRIAMDDFGSGYSSLSYFQAFPFDKIKIDRGFVMYLGRNPQSAAIVRAVIGLGHGLDV 841

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +I+A+ +  +  +  L   GCD +Q   +  P        L+
Sbjct: 842 SIVAEGVETQEQLGFLADEGCDAVQGFFIGKPEPIAHYATLV 883



 Score = 38.4 bits (88), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 47/178 (26%), Gaps = 24/178 (13%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATG----YFSQGIFSDGERQSLA---VLGS 414
           L  D        G+   +   GF  +  + A         +       R +     +   
Sbjct: 41  LSTDNHITGTDAGVAWEIFTGGFIAVSFLAAAAIWVTSVLRKARRSLRRHAFVSSGLNNL 100

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFV 472
              V   D  +  +        I GL    +   + +          D    R +LD+  
Sbjct: 101 NQGVVMTDSRQRIIFCNDRYLEIYGLLRSDIRPAMTD------PELGDLRRARGVLDACS 154

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI--LRYIGIANDITEQKKSLEG 528
                     +R+  A +     +   R ++     +     +    D +EQ+K    
Sbjct: 155 DQF-------YRLSNACDGLFTELPDGRLIAVKRFKLPNGGSVATHEDCSEQRKLARQ 205


>gi|120556297|ref|YP_960648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter aquaeolei VT8]
 gi|120326146|gb|ABM20461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
          Length = 867

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 139/562 (24%), Positives = 254/562 (45%), Gaps = 15/562 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      +G+ +   D     V        I G A   + G     L    
Sbjct: 187 RRSAEELRLAATVFEHAGEGILVTDTQGHIVNVNRAFTVITGYAREEVVGQTPRLLESDR 246

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++T+  +   +       E   R  +      ++ I  + +  G+I  Y  + +
Sbjct: 247 YDD-EFYQTVGQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 303

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K++ + +   A  D LTG+PNR    DRL   +  +     +   V+ ID+D +K
Sbjct: 304 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 362

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND  G AVGD +L  L+RR+ ++L+  D LARL G+ F  IL+   +S         +
Sbjct: 363 KVNDQHGHAVGDKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDSSVSVPILERL 422

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  + P+ + +    V+ASIG + +   +   + ++L+ A+ AMY AK  G N    F 
Sbjct: 423 IEVASQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 482

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                + R   +  + +  A+ N +  L Y P + +   E++G EALI+W HP  G +S 
Sbjct: 483 TEKDCTLRTRHEGFDSIENALANGQFLLYYQPKVNMRTGEVLGAEALIRWQHPTRGLLSP 542

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ I E   +   +  + +E     I  WR      P  I +NI ++ LL  +    +
Sbjct: 543 ASFIPIIENHPLGIDVGEWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 600

Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++S+     P  ++L   E+  + +  +   L+ +  ++G+   LDDFG+  S L+YL
Sbjct: 601 RGMLSRHPGARPQDLELEILETSAVEDFVQVSQLMAQCGRMGLRFALDDFGSGYSSLTYL 660

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +   +         IAIL +++ +A++     IA+ +      + L R+G
Sbjct: 661 KRLPAYLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLLRLG 720

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C++ Q   +  P+  +   + L
Sbjct: 721 CEWGQGYAIGHPMPAHEFEQWL 742



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 8/158 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIAT 436
           +    ++ +       Q + S   +R+ LA    G +++ +    D        +  I  
Sbjct: 44  LTTATVEDITDLKRVEQALNSMRLQREELASHVPG-MLYQYRLRPDGSSHFPYASAKIRE 102

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G+A   +          +H  DRD     + +  G        E+RV+  D +  W+ 
Sbjct: 103 IYGVAPEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVE 161

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               P +  +G IL + G  +D+T +++S E +   A 
Sbjct: 162 GEASPEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAAT 198


>gi|229520944|ref|ZP_04410366.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|229342177|gb|EEO07173.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
          Length = 684

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|110632976|ref|YP_673184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium sp. BNC1]
 gi|110283960|gb|ABG62019.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chelativorans sp. BNC1]
          Length = 574

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/561 (21%), Positives = 237/561 (42%), Gaps = 21/561 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             E     +      V+  D     V        I+G     +               + 
Sbjct: 4   SLEALYQVLTAIPYPVFVKDENHRWVLVNQAFCEIMGHTREELLYKTDYDFV---PAAQA 60

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDIT 520
           +    +D  V       + E  +  A      +  R   +     +G     + I +DIT
Sbjct: 61  DVFRAIDDHVFATGEPNENEEVLTDASGTVRVITTRKCRVELPTPDGPRPFIVAIFSDIT 120

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +++      +A  D+LTG+ NR    +RL   L  +      +  + ++D+D +K++N
Sbjct: 121 AYREAEARARYHAHHDSLTGLANRMHLGERLQEELIEA-RAKGTQLALFLLDLDGFKQVN 179

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD++L  +  R+  +++  D++ARL G+ F ++ +  ++S  +   A  +   
Sbjct: 180 DRYGHAAGDELLQIIATRLKRIVRGRDVVARLGGDEFCVVQVEPDDSSAVDALAERILGV 239

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ PI        VTASIG +++    +T  ++L+ A++A+Y  K  G      +     
Sbjct: 240 LSEPIVAEWGTARVTASIGISAFPGDAVTQEDLLRYADIALYSVKGSGRASYARYDKQKD 299

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   +   L  A+ N E+ L + P++  +D      EAL +W HP+ G I    F+
Sbjct: 300 GVSNSIGSLAPALEAAIANEEITLAFQPLVSTLDGTPRAFEALARWHHPELGAIPPGVFI 359

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   ++ A+   +L +       W        + + +NI+   +   +L E ++ ++
Sbjct: 360 PLAERKGLMPALGRLVLRQACDAAAKW-----DSDLQVRVNISPVQVESGDLVEVIRDVL 414

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T     R+++  +E+V++     +  +  RL+ +GI + LDDFG+  + L  L   PF
Sbjct: 415 KETRLPAQRLEIEVTEAVLLNEKSENLHIFHRLKMLGIKIALDDFGSGWTSLDVLRRFPF 474

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +       +  A++R+++ + K ++  I A+ +     +  L  MGCD +Q
Sbjct: 475 DRLKIDRSFVANMETDPRAAAVVRAVLSIGKALDLPITAEGVERREQLDVLRTMGCDEVQ 534

Query: 937 DSHVASPL------GFNSILK 951
              +  P         +   K
Sbjct: 535 GHFLGRPKNIRGNGPVDEAEK 555


>gi|220935016|ref|YP_002513915.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996326|gb|ACL72928.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 648

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/452 (26%), Positives = 226/452 (50%), Gaps = 20/452 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE++   + ++     D LT +PNR  F+DRL   +       +    V+++D+D +K+
Sbjct: 199 ITERQ--SKELVHQYSHDLLTNLPNRILFVDRLEQSIGR-RASRDAHLAVILLDLDNFKR 255

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPD------------ILARLSGNRFGIILISENN 626
           +ND LG   GD ++  L   + ++    +             L+RL G+ FGIIL   ++
Sbjct: 256 VNDSLGHKSGDLLIKQLGEDLRKVFLGNELARRYGIEASSITLSRLGGDEFGIILDEVDS 315

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +      + + I+   ++   ++ +T S+G + +      +  ++KNA+ AMY AK 
Sbjct: 316 LDLVVRIVQHLIEVISREHDIEGHQVFLTCSVGISVFPYDGDDADTLIKNADAAMYDAKQ 375

Query: 687 RGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG N  + +           +  +  L  A+   E  + Y P + ++  ++VG EAL++W
Sbjct: 376 RGRNSFQFYTKDINSQTYRQLILENQLVKALAREEFEVHYQPQVDVISGQVVGAEALVRW 435

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G    + F+ IAEE  +I+ +  ++L+++ +DI          P  I IN++++ 
Sbjct: 436 RHPEKGLQPPANFIAIAEETGIIEGLGAWVLQKVCQDIRQLTRDGYRIP-RISINLSARQ 494

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
              ++L E  +  I     +P+ I+L  +ES +M + + +  +L +L  +G+ L +DDFG
Sbjct: 495 FRQSDLVEQCRNTIRSAGIAPAYIELELTESTIMKDIDIAVGMLRQLNALGVRLAIDDFG 554

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+ L + P DT+K + S +          AI+ +I+ +AK++E  ++A+ +    
Sbjct: 555 TGYSSLNNLKHFPIDTLKIDKSFVRDIPGDRDDEAIVTAIVALAKSLELEVVAEGVETRE 614

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  L R+GC+ +Q    + PL F    + LK
Sbjct: 615 QLGFLKRLGCEIVQGYFFSRPLPFEGFREYLK 646


>gi|330986384|gb|EGH84487.1| sensory box/GGDEF family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 732

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/580 (22%), Positives = 230/580 (39%), Gaps = 17/580 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++   +     +        R       S D +   D     ++       I 
Sbjct: 147 VLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  S    G   +    I    R      L          +            D     +
Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTSIIGKSINLTAIHRDGHTIPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +       G+      I  D+T++ ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G+
Sbjct: 323 -----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML 
Sbjct: 378 EFVVFLSDTTDPDNATSLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + A+ I        +    CD  Q      P+  +   +
Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 626

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 229/437 (52%), Gaps = 4/437 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     + +  +AF D+LTG+PNR  F+++L  +++L+  D +    V+ ID+D++K +N
Sbjct: 173 ELLAKEDKLRYDAFHDSLTGLPNRTWFINQLNRVIELANLDSDYLYAVLFIDLDRFKVVN 232

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L    +R+ + +   DI+ARL G+ F I+L +  +  +    A  + + 
Sbjct: 233 DSLGHLVGDELLKIAAKRLQDCVPETDIVARLGGDEFIILLEAIGDMNEAISTADRILEQ 292

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFRVS 698
           + +P    + EI   ASIG    T     + + +++A++AMY AK +G    E  +  + 
Sbjct: 293 LRLPFIFDKYEIFTGASIGITFSTMGYDRAVDAIRDADVAMYQAKIKGKGCYEVLTKAIQ 352

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  ++R+ ++ +L  A+E  E  L Y PI+ L    ++G EAL++W       +S ++F+
Sbjct: 353 TQAANRLQLENELRKAIELEEFCLYYQPIVSLSTGHLLGFEALVRWQRAFGELVSPAKFI 412

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817
            +AEE+  I ++  ++ +   R +  W+ Q      + + +N++   L    L E MQ +
Sbjct: 413 PLAEEIGAINSLGWWIFQEACRQLRLWQQQFPQALGLTLNVNVSPVQLKQANLVERMQKI 472

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T  S S +KL  +ES  +        +L +L+  GI L +DDFGT  S LS L   P
Sbjct: 473 VEATGVSSSCLKLEITESCFLEASTCEATMLKQLKSQGIKLCIDDFGTGYSSLSRLHEFP 532

Query: 878 FDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            DT+K + S +   +  +   I+ +I+ +A +    ++A+ I     +++L  +GC+  Q
Sbjct: 533 IDTLKIDRSFVNRISAGKSDGIVETIVTLAHSFGMDVVAEGIETLEQLEKLCSLGCELGQ 592

Query: 937 DSHVASPLGFNSILKLL 953
               + P+   +  +LL
Sbjct: 593 GYLFSKPVDSQTATQLL 609


>gi|121603197|ref|YP_980526.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592166|gb|ABM35605.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Polaromonas naphthalenivorans CJ2]
          Length = 836

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/544 (24%), Positives = 249/544 (45%), Gaps = 14/544 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V          G +   + G               +    +   +  +R   + E  + 
Sbjct: 294 IVFVNQAFEEHTGYSGHEVLGQTP--RKLFGPGAVQDELQGMTKMLLRKR-HARSELLIY 350

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             +    W+ + I  ++ +  ++  ++ +  DIT++K + + I   AF D LT +PNR  
Sbjct: 351 RKNGSCFWLELEIVQVAVTADELTHWVAVGRDITQRKVNADAIHQLAFYDPLTTLPNRLM 410

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            L+RL  ++  SA     +  +M ID+DK K +ND LG   GD +L  +  R+   ++  
Sbjct: 411 LLNRLEQVMAQSA-HPRRQGALMFIDVDKLKVLNDTLGHHKGDLLLQQVAERLAGCVEDT 469

Query: 607 DILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           D++ARL G+ F ++L +  +     +      A  + + +  P +L   +   T+SIG  
Sbjct: 470 DMVARLGGDEFVVLLENLGDDAGSAAAHARQLAEKVLEQLREPFDLGGHQHYTTSSIGVT 529

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSE 719
           S  ++  + SE+LK A+LAMY AK  G N +  F      +         +L +A+   E
Sbjct: 530 SLNAAHGSVSEVLKQADLAMYQAKTTGRNALCFFDPEMQAAVNANAAVSSELHIALRKQE 589

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y P +      + G+EAL++W HPK G +  ++F+ +AEE  +I  +  + L    
Sbjct: 590 FVLHYQPQVD-SQGRVNGVEALLRWHHPKRGLVMPTDFIPMAEETGLILPLGRWALATAC 648

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             + +W        + I +N++ +     +  + + A I +T   P  +KL  +E+++  
Sbjct: 649 EQLAAWAAWPQAADLSIAVNVSVRQFRHPDFVDQVMAEIRRTGIKPQHLKLELTETLLAD 708

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIA 897
             + +   +G L+ +G++L LDDFG   S LS L  +P D +K + S +    +     A
Sbjct: 709 GMDVTLARMGTLKALGVTLALDDFGMGYSSLSLLKRLPLDQLKIDKSFVAEVLTDPADAA 768

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           I R+II +A ++   ++A+ +  +     L   GCD  Q    ++PL   ++   L  + 
Sbjct: 769 ISRTIITLAHSLNLKVVAEGVETQAQQDFLVAEGCDQFQGFLFSAPLPIEALEAYLMAQS 828

Query: 958 PLVK 961
           P +K
Sbjct: 829 PPLK 832



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 6/151 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGP 448
            L  G     +   G R ++    +    W  D+     +T + + A ILGL + +    
Sbjct: 11  ALTGGQVPTALQQAGHRLAMTERIAHIGSWALDLPALQLLTYSSEFAAILGLPADAPL-T 69

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                       R     +L     +       E ++        W+ +    + N  G 
Sbjct: 70  WDELADRFAPEYRKRIAALLQQCASHGTA-FDEEMQIDTPL-CRKWVRMACEAVQNKRGQ 127

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           I    G+  DI+ QK + +  L  A +  LT
Sbjct: 128 IKSLQGVLQDISTQKHAQQETLHLAMR--LT 156


>gi|121587851|ref|ZP_01677608.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|147673182|ref|YP_001216147.1| PAS/GGDEF domain-containing protein [Vibrio cholerae O395]
 gi|153215852|ref|ZP_01950184.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587]
 gi|153802006|ref|ZP_01956592.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|153818697|ref|ZP_01971364.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|153822535|ref|ZP_01975202.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33]
 gi|153826524|ref|ZP_01979191.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|153829181|ref|ZP_01981848.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|227080834|ref|YP_002809385.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229505725|ref|ZP_04395235.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286]
 gi|229509242|ref|ZP_04398727.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229519550|ref|ZP_04408993.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229530459|ref|ZP_04419847.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229608836|ref|YP_002879484.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254226539|ref|ZP_04920122.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51]
 gi|254291892|ref|ZP_04962674.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|254850887|ref|ZP_05240237.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MO10]
 gi|255744130|ref|ZP_05418083.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262156106|ref|ZP_06029225.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169951|ref|ZP_06037641.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262191207|ref|ZP_06049406.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT
           5369-93]
 gi|297580779|ref|ZP_06942705.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           RC385]
 gi|121547887|gb|EAX57971.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|124114569|gb|EAY33389.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 1587]
 gi|124122465|gb|EAY41208.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|125620943|gb|EAZ49294.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V51]
 gi|126510777|gb|EAZ73371.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|126519953|gb|EAZ77176.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae B33]
 gi|146315065|gb|ABQ19604.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae O395]
 gi|148875370|gb|EDL73505.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|149739704|gb|EDM53911.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|150422178|gb|EDN14143.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|227008722|gb|ACP04934.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|227012478|gb|ACP08688.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395]
 gi|229332232|gb|EEN97720.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229344239|gb|EEO09214.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229353814|gb|EEO18750.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229357948|gb|EEO22865.1| hypothetical protein VCF_000936 [Vibrio cholerae BX 330286]
 gi|229371491|gb|ACQ61914.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254846592|gb|EET25006.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MO10]
 gi|255738070|gb|EET93462.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262021685|gb|EEY40396.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262030142|gb|EEY48787.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262032909|gb|EEY51448.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae CT
           5369-93]
 gi|297535195|gb|EFH74030.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           RC385]
          Length = 684

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|323528074|ref|YP_004230226.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323385076|gb|ADX57166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 667

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/542 (24%), Positives = 252/542 (46%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+   ++ G    W  ++   D       +  F   R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSSEDGAASSQNIAGFF-NRGVSYEV 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E RV+  + +  ++       S S  D    I    DITE++ + E +   A  D+LTG+
Sbjct: 187 ERRVKTLNGERLFLFRNKFVQSGSGIDEQYLICSGTDITEERLAQERLTQLANTDSLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  D++ T ++ +A        V+ +D+D +KK+ND  G   GD ++  ++  IG 
Sbjct: 247 ANRNAIQDKIRTAIEEAA--PGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAIGT 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++  + ++   A  + + +  P +L   E+    SIG A
Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAHELEATAQRILERMRTPFSLGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +         ++++A+ AMY AK  G      F     R   + + +  +L   +E  +
Sbjct: 364 RYPEHGDNLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLEEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G+EAL++W+ P+ G I  +EF+  AEE  +I  +  ++++   
Sbjct: 424 LTLHYQPKLVLSTGVVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMQT-- 481

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               + + +A+   + + IN++++ L+D  +       +++    P  + +  +ES ++ 
Sbjct: 482 AAKQAAKWKADGHNLRVAINVSARQLVDTAVVRHFTEALAEAHLDPCLVDVELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +   +  L+   R++G  + LDDFGT  S LS LG IP D +K + S +          A
Sbjct: 542 DEAAAIDLIKSFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ +   ++A+ I  E +   +  +G +Y+Q    A P+      + LK+R 
Sbjct: 602 LVRSMVVVAQELGFKVVAEGIETESEEAFMKGLGVEYVQGYLYAQPMPAAEFERWLKDRQ 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|15640673|ref|NP_230302.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|9655090|gb|AAF93819.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
          Length = 684

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/572 (23%), Positives = 256/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ESVVM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESVVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|229165486|ref|ZP_04293268.1| Sensory box/GGDEF [Bacillus cereus AH621]
 gi|228617991|gb|EEK75034.1| Sensory box/GGDEF [Bacillus cereus AH621]
          Length = 689

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 238/549 (43%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     +         +I+      F+ 
Sbjct: 149 FKSLLEYNNDSIISVDSIGRITYANPATYEIFGYRYEELKDQFI--FQFINKEYEKTFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I  + +  R  ++  + +    +    ++ +R  P+   N +I+    +  D+T Q  + 
Sbjct: 207 IFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIPII-VNSEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L  +         ++ ID+D++  IND  G  
Sbjct: 265 MKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE-----FALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  + +L      L R   ++F +++ +      + + A  + K I+    
Sbjct: 320 EGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLIENIT-REYVEEVAQTILKKISGHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG        +    + +  + A+  AK +G  +   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPEDGMDEKILFQRVDAALEKAKEKGKGYYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E  L Y P I +   +I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFSLYYQPQINIETGKIASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++   I  W ++     + I +NI++K      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVHQVCEQIREWLNK-GYVVVPIAVNISAKHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 PHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +   +IA+ +     I+ L        Q      
Sbjct: 617 RSFMEGIYKDERDTNITAAIINLAHTLGLNVIAEGVEKAEQIQFLKGKNVKIAQGYFYNR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSIYDVEN 685


>gi|295703224|ref|YP_003596299.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294800883|gb|ADF37949.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
          Length = 843

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 217/451 (48%), Gaps = 10/451 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +  ++    D  + KKS E    +A+ D LTG+PNR+ F + L   L  S        
Sbjct: 392 NHLSHFLKTYVD--DLKKSQEESEYHAYHDFLTGLPNRRYFKEELNRRLIESKEKSIRHV 449

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISEN 625
            V+ +DID++K IND LG + GD ++  ++ RI E L      L R  G+ F I+     
Sbjct: 450 AVLFMDIDRFKDINDTLGHSKGDQLIQLISNRIKECLPPANSFLTRQGGDEFVILFSDFT 509

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++      +   +  P  +   E+ V+ S G + +         ++  A++AMY +K
Sbjct: 510 -PEEVKCITEKIIAYVQQPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASK 568

Query: 686 HRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +GG+ V  +    +  ++++V I+  L  A++  ++ + Y P I      I G+EAL++
Sbjct: 569 RQGGSKVSIYHDSLNQKQAEKVHIETRLRKAIQKGDIDVYYQPKIEAHRNVITGVEALVR 628

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+  + G +S   F+ IAEE  +I+ +   ++ +    +  W  +     + + +N + +
Sbjct: 629 WNDAELGFVSPEVFIPIAEEAGLIQPLWEVVMRKACSQVSKWNKE-RNEKMTLAVNFSPR 687

Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              D   L   +Q  +S   + P+  ++  +ES ++ N E +   L  L+K GIS+++DD
Sbjct: 688 QFQDPIVLVNEIQQFLSLHRFDPTWFEMEITESTLLMNAEETIKALHLLKKYGISISIDD 747

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P D +K + S +    E      I ++II ++++++  +IA+ +  
Sbjct: 748 FGTGYSSLSYLKKLPIDCLKIDRSFIQDIQEDYSNSEIAQAIISLSQSLKLQVIAEGVEE 807

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           E     L   GCD++Q    + PL       
Sbjct: 808 EYQKAFLMENGCDHMQGYLFSKPLAAKDFEA 838


>gi|219847558|ref|YP_002461991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Chloroflexus aggregans DSM 9485]
 gi|219541817|gb|ACL23555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus aggregans DSM 9485]
          Length = 830

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 149/714 (20%), Positives = 289/714 (40%), Gaps = 32/714 (4%)

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
           S I  L  Y      + +   +              + +            + +  +   
Sbjct: 127 SAIAILDRYGRVLAANVRWLQLGPLLGVDTFDCAVGAAFLAACQLGRGSAVVIATAIEQL 186

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
                   +    AV     W+ +     G    +   +  + +        + +V    
Sbjct: 187 LASAQERYENEVAAVDSTRRWLSVRAVRFGAGSRVRVVIVLEDVSARHQADQIALVRRRV 246

Query: 384 FTVIQHVLATGYFSQGIFS-------DGERQSLAVLGSGDIV-----WDWDIVRDRVTTT 431
             +I         ++ +         D    + A+  +G  V        D   +     
Sbjct: 247 LELIARQYDLRTIARELLQLIGEQMPDLVYAAYAIRSAGVFVSYHHEILHDDQPNLDRWA 306

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA--AD 489
             I T+       +     +             + ++   +  R        R     AD
Sbjct: 307 EQILTMSPYPRQRIAELPLDSPVG------QRMQELIQLHIVNRA--WIAVVRTNRDQAD 358

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                      P++      +  I     I  EQ  +L  +   A  D LTG+PNR  F 
Sbjct: 359 GWLLLCRRNDTPLTTDEKQAIDQIEQLTIIALEQHTTLHKLAYQAHHDALTGLPNRLLFE 418

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL   +DL+  +++L   V+ ID+D++K +ND LG A+GD +L+ + RR    L+  D 
Sbjct: 419 DRLQQAIDLARRNNSL-VAVLFIDLDRFKHVNDTLGHAIGDLLLIQVARRFELCLRATDT 477

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LAR  G+ F ++L    +   +A  A  + +++  P  +   EI V+ASIG + +     
Sbjct: 478 LARHGGDEFLLVLPEITSPQHVATVARRLHEALDRPFFINGHEIFVSASIGASLYPIDGS 537

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
               + + A++AMY AKH   N  + F   +++   +++ I+  L  A+E +EL L Y P
Sbjct: 538 DVVSLQRAADIAMYRAKHTLRNSFQFFDAAITNASLEQLQIETLLRRAIERNELLLYYQP 597

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +      +   EAL++W+  + G +S   F+ +AEE  +I  I +++L  +AR +  W+
Sbjct: 598 KVD-RSGNLTSFEALLRWNSAELGMVSPVRFIPVAEETGLIIPIGIWVLTELARQVREWQ 656

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            Q   P + +  N+++      +  + +  ++++       ++L  +E+++MG  E  R 
Sbjct: 657 RQGL-PLVPVAANVSALQFAHVDFVQQVADILAQAALPAGWLELELTETMLMGQIEDLRR 715

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSI 902
            L  LR++G++L +DDFGT  S LSYL  +P   +K + S +    +       +I  +I
Sbjct: 716 QLTELRQLGVTLAIDDFGTGYSSLSYLHLLPISILKIDRSFIMRLDQSDATVERSITNAI 775

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I +  ++   ++A+ +  E   + L   GCD  Q  ++  PL  +  +  L+ +
Sbjct: 776 IALGHHLGMQVVAEGVETEGQFQILLSAGCDLFQGYYIERPLPPDETVAWLRRK 829


>gi|91223235|ref|ZP_01258501.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell
           regulation) [Vibrio alginolyticus 12G01]
 gi|91192048|gb|EAS78311.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell
           regulation) [Vibrio alginolyticus 12G01]
          Length = 776

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 219/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGS-KVLVMFIDLDHFKQ 393

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+ ++ +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 394 INDSMGHFVGDEILKLSAQRLYQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 453

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +   P      E  +++S+G + +      + ++L  A++AMY AK  G +    +  +
Sbjct: 454 SAFNDPFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRAKQDGRDGFCFYNHN 513

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ N  L L Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 514 MNQDLQRYLDLENRLRSAISNQLLELYYQPIIELSSGKIVGAEALMRWNDDKYGFVNPEE 573

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  I  F +++  R    W+      P+F+ +N +S        L   ++
Sbjct: 574 FISIAEKNGLIHQIGEFAIQQACRQAAQWQSL---TPLFVSVNFSSVQFRYCERLLTFIK 630

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 631 HSLEESGLPSDKFDIEVTESLLFNHDSELLDMLNNLRALGTKLTIDDFGTGYSALSYLQK 690

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK ++  I+A+ I  +  +  L  + C+
Sbjct: 691 FPFDRLKIDRSFMQNMFENDSDRELVNVIIAMAKALDLKIVAEGIEEQRHVDYLKNLNCE 750

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + PL       LL +
Sbjct: 751 FGQGFHYSRPLPAKDFEALLAK 772


>gi|317130662|ref|YP_004096944.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475610|gb|ADU32213.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
          Length = 774

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 119/430 (27%), Positives = 214/430 (49%), Gaps = 8/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S + +   A  D LTG+PNR      L   +     +D     +M +D+D++K +ND +
Sbjct: 348 QSRKEVEYRANHDILTGLPNRYHIEQLLEQEIVTCDENDQ-SLALMFMDLDRFKILNDTM 406

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+    R+ + +     + RL G+ F +IL  + +  K+++ A  + K +A 
Sbjct: 407 GHQIGDQLLIQTAIRLQQHVCENCTVGRLGGDEF-LILSKDASIEKVSNIAKKILKDMAN 465

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +  +E   + SIG + +     T  +++K+A+ AMY AK  GGN+ + +        
Sbjct: 466 PFIINSKEFFTSPSIGISVYPKDGQTKDDIIKHADTAMYVAKENGGNNYQFYTPEPTNLL 525

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I+ DL  A++N E  L Y P + L   ++VGLEALI+W HPK G I   +F+ IA
Sbjct: 526 SKKYIIENDLRKALKNEEFLLYYQPQVDLKSGDLVGLEALIRWQHPKLGLIPPMDFIPIA 585

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  I  ++++   R    W+ Q     I + +N++     D    E ++A + +T
Sbjct: 586 EETGYINHIGKWLIKEACRQNKQWQ-QNGSFYIPVAVNVSPWQFRDKNFVENIKAALDET 644

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +ES +M +   +   + +++++GI + +DDFGT  S L+ +  +P DT+
Sbjct: 645 NLDPKYLELEITES-MMHHFIDTIDKVHQVKEMGIKVAIDDFGTGYSSLNAIDQLPIDTL 703

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      + + AI+++II +  N+    IA+ +  E     L    C   Q   
Sbjct: 704 KIDRSFIRDMITNDSKAAIVKTIIDLGNNLHLNTIAEGVEYEEQATFLANQDCVKAQGYL 763

Query: 940 VASPLGFNSI 949
            + PL    +
Sbjct: 764 FSKPLPPEQL 773


>gi|325113002|ref|YP_004276948.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325052469|dbj|BAJ82806.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 620

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/503 (24%), Positives = 238/503 (47%), Gaps = 22/503 (4%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +L  +        R  + +      G L+      AAD +  W    +  + +  G +  
Sbjct: 112 FLDRVGP----GCRAAMAALFQGDGGTLE----WLAADGE-AWFRTEVAALRDEGG-LSG 161

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ I  D++E++++ E I   A  D LTG+ NR+   ++L   L+ +      +  V VI
Sbjct: 162 YLVITQDVSERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELE-AGRRQGTKFAVHVI 220

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND+ G A GD +LV L   + +  +  D++AR+ G+ F ++     ++    
Sbjct: 221 DVDRFKTVNDLFGHAAGDRLLVDLATCLRQEARESDMIARIGGDEFVVLQTGIGDARDAG 280

Query: 632 DFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A  +  +++  +     R +  T SIG A       T+  +L +A++A+Y  K  G N
Sbjct: 281 ALAGRLVGAVSARLAETGARALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRN 340

Query: 691 HVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F      +   R  ++ +L  A E  E+ + Y P+  +  + +VG EAL++W    
Sbjct: 341 GFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRW-N 399

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              IS + F+ IAEE   I  I  F+L    R+   W        + + +NI++  + D 
Sbjct: 400 GEEISPATFIPIAEESGSIIEIGRFVLREACREAAGWPA-----KLRVAVNISALQIQDG 454

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  ++ +T     R++L  +ES+++ N E +  +L R+R +G++++LDDFGT  S
Sbjct: 455 GLPDLVATVLEETGLEAGRLELEVTESLLLANAEAATEVLARIRALGVTISLDDFGTGYS 514

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L   PFD +K + S +       +  AI+ +++ + + ++ +++A+ +  +     
Sbjct: 515 SLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVSVVAEGVETKEQAAM 574

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   GC  +Q   +  P      
Sbjct: 575 LREAGCSLLQGYLIGRPAPIARF 597


>gi|82702833|ref|YP_412399.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis ATCC
            25196]
 gi|82410898|gb|ABB75007.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Nitrosospira multiformis ATCC 25196]
          Length = 1109

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 140/577 (24%), Positives = 260/577 (45%), Gaps = 11/577 (1%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLAS 442
              +I+ +         I +   +    +    D++++ D         +        ++ 
Sbjct: 528  VAMIRDITEQERRKTEILAARRQLQATLDAIPDLLFELDADGCVHAWHSVRRTEFPTVSG 587

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             S+ G       ++     D   + L            Q E R+   ++++ W  + +  
Sbjct: 588  ESLVGKKVA--DFLPTGAVDIILSALAEAQEKGLSSGKQLELRLPGREDKW-WFELSVSR 644

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
                +   LR+I +A DITE+K S + IL  A  D+LTG+PNR    DR+   ++ +A  
Sbjct: 645  KHVDSAAGLRFIVLARDITERKASEQRILHLAHYDSLTGLPNRALLADRMRVAINRAARQ 704

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               R  V+ +D+D++K IND LG  VGD +L  +  R+   ++  D ++R+ G+ F ++L
Sbjct: 705  AK-RLAVLFVDLDRFKAINDSLGHDVGDHLLKVVAERMQTSIRSVDTVSRVGGDEFVVLL 763

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 +   A  A  +   ++ P  + + E+ +T SIG   +  +    + +L+NA+ +M
Sbjct: 764  NEIETAEDAARVAQKIIDGLSQPYQIEKHELLLTGSIGICIYPDNGKEPNILLRNADASM 823

Query: 682  YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N  + +         +R+ ++ DL  AVE  E++LVY P I L    ++G+E
Sbjct: 824  YTAKEAGHNRYQFYSEDMTARAIERLSLEHDLRGAVERGEMFLVYQPQIELGTSRVIGVE 883

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             L++W HP  G IS   F+ +AE+  +I +I  + L    R    W ++       I +N
Sbjct: 884  VLMRWRHPARGLISPVRFIPVAEDTGLILSIGEWGLRESCRQAQLWYERGL-LNACISVN 942

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +++      +    ++  + ++  +P+ ++L  +ES VM   E +   L  L  +G+ + 
Sbjct: 943  VSAVQFRQTDFVGIIENALQESGLAPTNLELELTESAVMQGAEPALNKLRELDALGVKVA 1002

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S L+YL     D +K + S +          AI  +I+ M  N+   IIA+ 
Sbjct: 1003 IDDFGTGYSSLAYLRQFTVDRLKIDQSFVRDVPGNNDAEAIAAAIVAMGLNLGFRIIAEG 1062

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  E   + L  + C   Q    A P+        + 
Sbjct: 1063 VETEAQAEFLQSVLCKEGQGYLFAWPMTAIEFEAWIA 1099



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 18/198 (9%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           L  +W +  WM+    +             V +V+L+ +   Q              D  
Sbjct: 372 LAQLWTLVFWMSAVILIA---------VTAVSVVLLLLWRQQQRAHQLALIIHTADQDR- 421

Query: 406 RQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
                       +        R +        ++G ++  +    ++W+   H +D    
Sbjct: 422 LLKYFYDLPFIGMAITSPDTKRWLRFNNQFCEMMGYSTEELA--KKSWIEITHPDDVAKS 479

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
               +  +           R    D    +  + ++ +   +G +  ++ +  DITEQ++
Sbjct: 480 TAERERILKGESEGYAMNKRFIRKDGSIIFANVDVKCVRRDDGTVHYFVAMIRDITEQER 539

Query: 525 -----SLEGILCNAFQDN 537
                        A  D 
Sbjct: 540 RKTEILAARRQLQATLDA 557


>gi|148243771|ref|YP_001220011.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146400334|gb|ABQ28869.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
          Length = 620

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/503 (24%), Positives = 240/503 (47%), Gaps = 22/503 (4%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +L  +        R  + +      G L+      AAD +  W    +  + +  G +  
Sbjct: 112 FLDRVGP----GCRAAMAALFQGDGGTLE----WLAADGE-AWFRTEVAALRDE-GRLAG 161

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ I  DI+E++++ E I   A  D LTG+ NR+   ++L   L+ +      +  V VI
Sbjct: 162 YLVITQDISERRRATERIRYLAEHDPLTGLANRRRLHEQLEGELE-AGRRQGTKFAVHVI 220

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND+ G A GD +LV L   + +  +  D++AR+ G+ F ++ +   ++    
Sbjct: 221 DVDRFKTVNDLFGHAAGDRLLVDLATCLRQEARESDMIARIGGDEFVVLQVGIGDARDAG 280

Query: 632 DFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A  +  +++  +     R +  T SIG A       T+  +L +A++A+Y  K  G N
Sbjct: 281 ALAGRLVGAVSARLAEPGARALAATVSIGIALAPDDGTTAEALLSHADMALYQVKSTGRN 340

Query: 691 HVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F      +   R  ++ +L  A E  E+ + Y P+  +  + +VG EAL++W    
Sbjct: 341 GFAFFNTEINEAQLARRRMEAELRGACERGEMAVHYQPLFEIASDRVVGFEALVRWRR-D 399

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             ++S + F+ IAEE   I  I  F+L    R+   W        + + +NI++  + D 
Sbjct: 400 GEDVSPAVFIPIAEESGSIIEIGRFVLREACREAAGWP-----VKLRVAVNISALQIQDG 454

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  ++ +T     R++L  +ES+++ N E +  +L R+R +G++++LDDFGT  S
Sbjct: 455 GLPDLVATVLEETGLEAGRLELEVTESLLLANAEAATEVLARIRALGVTISLDDFGTGYS 514

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L   PFD +K + S +       +  AI+ +++ + + ++ +++A+ +  E     
Sbjct: 515 SLATLRMFPFDKIKLDRSFVNDLGRLGEAEAIVMAVLGLGRALDVSVVAEGVETEEQAAM 574

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L   GC  +Q   +  P      
Sbjct: 575 LRAAGCSLLQGYLIGRPAPIARF 597


>gi|121728390|ref|ZP_01681418.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52]
 gi|121629324|gb|EAX61756.1| PAS domain S-box/GGDEF domain protein [Vibrio cholerae V52]
          Length = 684

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/572 (23%), Positives = 255/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTLIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|119493530|ref|ZP_01624196.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119452647|gb|EAW33828.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 596

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/439 (29%), Positives = 226/439 (51%), Gaps = 4/439 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +   AF D LTG+PNR  F++ L   L  +  D + +  ++ ID D++K +N
Sbjct: 154 QLEEVHAKLTTLAFHDELTGLPNRALFINSLNEALKNNQADSSDQFALLYIDCDRFKVVN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +VGD +L ++  R+   L    ILARL G+ F I+L +        + A  + ++
Sbjct: 214 DSLGHSVGDRLLTAVAHRLSNALPSVQILARLGGDEFAILLTNIQEIKPAVEVAEKVIET 273

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  P  L + ++ V ASIG A    S      +L++A+ AMY AK +G    V    +  
Sbjct: 274 LLTPFKLEKYDVYVNASIGIALSNESYTQPQHILRDADAAMYRAKKQGNRYQVFDPTMHQ 333

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I+ DL  A+  +EL L Y PII L   ++VG E L++W H   G IS  EF+ 
Sbjct: 334 KAVQTFQIETDLRKAISLNELRLNYQPIIDLKTGKLVGFETLVRWFHTNRGLISPIEFIP 393

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALI 818
           +AEE  +I  I  ++LE+  + + +W++       + + IN++++     +L + +  ++
Sbjct: 394 VAEETGLIIPIGYWILEQACQQLKTWQENGLANEELTVNINLSARQFSQIDLIDQIDQVL 453

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       IK   +ES +M N ++++ +L ++R   I + LDDFGT  S LSYL Y   
Sbjct: 454 TKIDLDSRYIKFEITESAIMENHQKAQNILEQIRDRQIQICLDDFGTGYSSLSYLDYFSI 513

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S          ++ ++  II +A ++   ++A+ +  E  + +L  + CD+ Q
Sbjct: 514 DTLKIDKSFTGRLDGTPAKLGLVPVIINIAHHMGMNVVAEGVETEKQLNQLQELDCDFGQ 573

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL   +  KLL+ 
Sbjct: 574 GYFFAKPLDVENATKLLES 592


>gi|89093904|ref|ZP_01166849.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081790|gb|EAR61017.1| sensory box/GGDEF domain/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 812

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 135/577 (23%), Positives = 249/577 (43%), Gaps = 15/577 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           TV Q ++        +          +     ++   +     +      A         
Sbjct: 233 TVQQLLIENRENHHALERSENSLKQLINRVPQLILAVNSEGIVLFCNRKFAEFYSCRIDE 292

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G     L  +     +    I  S    +      +F   +   +     I   P   
Sbjct: 293 VAGLSLLQLHNVDHE-VEELNQIRRSVEVNQTEEAVTDFIWSSQTGKKLHFSITAAPFVY 351

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +     ++    DI+EQK   + I   A  D LTG+PNR    DRL   L  S    +L
Sbjct: 352 FSEPATLFVAT--DISEQKMVQDHISYMANHDTLTGLPNRALLNDRLEQALAASRRSGDL 409

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +M ID+D +K IND LG  VGD +L  +   +   ++  D +ARL G+ F I+L + 
Sbjct: 410 N-ALMFIDLDHFKNINDSLGHGVGDLLLKKVAEILINEVRSCDTVARLGGDEFVILLQAF 468

Query: 625 NNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +        +      +   ++ PI + + ++ + ASIG   +  +  T  ++++ A+ 
Sbjct: 469 QSDVDQVTQDVERVCHKLLTILSQPIEVKQHQLRIGASIGVVLFPMADKTLDDLMRFADT 528

Query: 680 AMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMYHAK  G N    +  +       +  ++ +L  A+E  +  + Y P++ +   EI+G
Sbjct: 529 AMYHAKENGRNGFAFYHQAMSLAVEKQQNMESELHQAIEEEQFCVHYQPLVSV-GGEIIG 587

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFI 796
            EAL++W HP+ G +  +EF+   E   +I  ++ ++L   +R I+ W++     P  ++
Sbjct: 588 FEALLRWQHPEKGLMPPAEFIPSLEVSGLIVPVSNWLLGHCSRQIVKWKETGFWQPDWYV 647

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+       ++   MQ  IS+     + I L  +E+V + N E +   L  +R++G+
Sbjct: 648 SVNISPLQFYQADMVPTMQQAISEGGAHLTDICLEITETVAIENIEFAVNRLKVIRELGM 707

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTII 914
            + LDDFGT  S LSYL  +P D VK + S +    +  K  +I+ ++  +A+  E  ++
Sbjct: 708 MIALDDFGTGYSSLSYLKDLPIDIVKIDRSFVQELGQKSKSQSIVEAVTNIARAYELKVV 767

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A+ I     +     +GCD  Q   +  P     + +
Sbjct: 768 AEGIESHDQLMLAHNIGCDIFQGFFIERPQVAEKLKR 804


>gi|224367296|ref|YP_002601459.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690012|gb|ACN13295.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 925

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 142/559 (25%), Positives = 256/559 (45%), Gaps = 19/559 (3%)

Query: 418 VWDWDIVRD----RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           ++   +           +  +    G+ S +M       L  IH  D +     ++    
Sbjct: 369 IFQCQLDTRGRYHFSYVSSGVYQACGITSKAMEQEAGVLLDRIHEQDVERVTERVNQS-T 427

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 + +FR+   +    W+     P   ++G  L Y G   D+TE+K S + I   A
Sbjct: 428 QTLETWKSQFRILHPERGLIWLEGHATPERMTDGGTLWY-GYIWDVTERKASEDQIKKLA 486

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+ NR+  +DRL   + +S    N    V+++D+D +K +ND  G  VGD +LV
Sbjct: 487 LYDALTGLANRRLLMDRLGHAIAISRRKKNC-GAVLMLDMDNFKSLNDTKGHNVGDALLV 545

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLL 648
            + +R+   ++  D +ARL G+ F ++L       K         A  ++  +     L 
Sbjct: 546 EVAKRLQACVRETDTVARLGGDEFVVLLEWLGQDEKVGHEKAMAIAEKIKGMLNQAYLLG 605

Query: 649 --EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                   +ASIG + + S      E+LK A++AMY AK RG N V  +  +        
Sbjct: 606 REHHLHHSSASIGVSLFQSGDAGEGEVLKRADVAMYEAKDRGRNRVCFYSEARQAMVDTR 665

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +  D+   +   E +L   P   L + +I G EAL++W       +S   F+ IAE  
Sbjct: 666 AAMALDMQTGLGKKEFFLFLQPQF-LNNGKICGAEALLRWMPRGKPPVSPELFIPIAEST 724

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++E+  + I             I +NI+++  +D    + M+ ++++    
Sbjct: 725 DLILLLGEWVMEKACQYIKDLGRYDLPKEFAIGVNISARQFVDERFLDKMKGILNRAGID 784

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PSR+K   +E+ ++ + ER R++L  LR +G+S+ LDDFGT  S L+ +  +P  T+K +
Sbjct: 785 PSRLKFELTETCLIQDMERGRMILNELRLMGLSVELDDFGTGYSSLNSIKNLPLTTLKLD 844

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL++G   +    AI+++ + MAK +    IA+ +     +  L   GCD +Q    A 
Sbjct: 845 RSLISGIENQNSNRAIVKAALAMAKAMSLKTIAEGVETPTQMDFLVAQGCDMVQGFLYAR 904

Query: 943 PLGFNSILKLLKERFPLVK 961
           P+ +   +  L++   L+K
Sbjct: 905 PMPYEDFMGFLEQESILLK 923



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 1/159 (0%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
            I   +   V + + +     + +    +R   A   +    W+ D    + T +  I  
Sbjct: 207 FIFRPLEGQVQRALFSLESSVKEMTKTRKRLLAAQKLALVGDWELDTRTGKFTCSDQIYE 266

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G+    +    +  L  +H  DR      L S V  ++G L  E+R++  D     + 
Sbjct: 267 ICGMCRNDVELTWKAVLKQVHPEDRGMVTKSLRSLVE-KQGALSLEYRIKGQDGVERLVY 325

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                +   +G + +  G   DITE+K+    +   +  
Sbjct: 326 QHAASVKGRDGRVEKVSGAVQDITERKELSAKLEKLSGH 364


>gi|158334589|ref|YP_001515761.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris
           marina MBIC11017]
 gi|158304830|gb|ABW26447.1| PAS sensor diguanylate cyclase/phophodiesterase, putative
           [Acaryochloris marina MBIC11017]
          Length = 935

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/576 (21%), Positives = 238/576 (41%), Gaps = 17/576 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I+      + +       + +    +R         D+ W+ D        +    ++ G
Sbjct: 365 IIGAAISARDITVLKDTEEALRESQQRFHDFAAIGADLFWETDAELRFTYLSEQHCSLTG 424

Query: 440 LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
               +  G    ++         D+    LD+           E   +  D     +   
Sbjct: 425 SPIEAWIGKSCLDFYAVFKPTAWDHLNQTLDAL-----EPFDIEIECQHLDGNARVLRSI 479

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +P+ +  G    Y GI  DITE     + +   A  D+LTG+ NR+ F  +L  I++  
Sbjct: 480 GKPVFSPQGVFCGYRGIGRDITEAHSLSQQLTHQATHDSLTGLVNRREFEHQLGQIIEEK 539

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
            ++  ++  +  +D+D++K +ND +G   GD +L  +   +   ++  DIL+RL G+ FG
Sbjct: 540 QSNP-IQHALCFLDLDQFKIVNDTVGHLAGDALLKQVADLLQAHIRQTDILSRLGGDEFG 598

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L + +           + +          +   + ASIG    T+     + +   A+
Sbjct: 599 LLLKNCSLEKARIVTENLISELSQFRFIWEGQLFKIGASIGIVPITADTDNLTLLFAKAD 658

Query: 679 LAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPII--RLMD 732
           +A Y AK RG N V  +   +     +   +M    +  A+E S   L Y PI+      
Sbjct: 659 VACYSAKDRGRNRVHLYHAQAQGVTEQHSELMQVATIRKALEESRFRLYYQPIVPLDTET 718

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +  V  E L++        +S + F+  AE   ++  I+ +++E +     ++       
Sbjct: 719 KIPVCYEILLRLQDTDGKILSPNSFLPAAERYGLMLEIDKWVIENVLIKYGAYFQS--QE 776

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I IN++   L D+ L + +Q  ++KT   P +I    +E+V + N +++   + +++
Sbjct: 777 NTRISINLSGSSLDDDALLDFIQTQLNKTQLEPHKICFEITETVAISNFKQAIQCIEKIK 836

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
           + G    LDDFG+  S  SYL   P D +K +GSL+    E      ++ +I  + + + 
Sbjct: 837 EFGCHFALDDFGSGFSSFSYLKRFPIDYLKIDGSLVRDMVEDATHQVMVSAINQICRAMH 896

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              IA+ +     I  L ++G DY+Q   +  P   
Sbjct: 897 IKTIAEFVENGDTIVALEQIGVDYLQGYAMGKPQPL 932



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 10/130 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDR 461
           ++LA   + D +   D        +  +P      G     + G   ++L       N  
Sbjct: 142 RALAAETANDGIVISDATVPGFPVIFASPSFYQFTGYTPDEVIGNSCHFLQGPKTDPNTV 201

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D  R  L +         + E        Q  W ++RI+P++N+ G++   +GI  DIT+
Sbjct: 202 DEIRQALKN-----DQTFEGEILNYRKMGQPFWNLLRIKPLTNAQGEVHFLVGIQTDITQ 256

Query: 522 QKKSLEGILC 531
           QK++ E +  
Sbjct: 257 QKETEERLRQ 266


>gi|257484752|ref|ZP_05638793.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 732

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/580 (22%), Positives = 230/580 (39%), Gaps = 17/580 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++   +     +        R       S D +   D     ++       I 
Sbjct: 147 VLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  S    G   +    I    R      L          +            D     +
Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTSIIGKSINLTAIHRDGHTIPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +       G+      I  D+T++ ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G+
Sbjct: 323 -----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML 
Sbjct: 378 EFVVFLSDATDPDNATSLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + A+ I        +    CD  Q      P+  +   +
Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|229154257|ref|ZP_04282377.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
 gi|228629081|gb|EEK85788.1| Sensory box/GGDEF [Bacillus cereus ATCC 4342]
          Length = 689

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/550 (21%), Positives = 242/550 (44%), Gaps = 16/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKRSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L     ++ +    + ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNDFL-----NEKIDFAFIFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   A +++K I+    
Sbjct: 320 EGDKVLQKVTECLSSFQIPGMHLFREHDDQFVMLIENIT-KERVEVVAKSIQKKISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + E ++ ++ASIG             + +  + A+  AK +G  H   +           
Sbjct: 379 IEEEDVYLSASIGIVMAPRDGEDEKILFQRVDAALEKAKDKGKGHYHFYCSGLDSEREQR 438

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +  ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFFLHYQPQINIETKKIASMEALIRWENKELGFVPPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++  + R I  W ++     + I +NI+++      L E +   + K    
Sbjct: 499 GFIIKLDEWVVNEVCRQICEWLNKGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 AHLLAIEITEGALI-HKDISKRVLLQLKEQDLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +E  +IA+ +     I+ L      ++Q  + + 
Sbjct: 617 RSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKEKNVKFVQGYYYSR 676

Query: 943 PLGFNSILKL 952
           PL    +  +
Sbjct: 677 PLSKYDMENM 686


>gi|309792407|ref|ZP_07686874.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308225562|gb|EFO79323.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 852

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 136/519 (26%), Positives = 238/519 (45%), Gaps = 17/519 (3%)

Query: 454 PYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDI 509
            +   +D        ++D+     R       R                  P+   +  +
Sbjct: 337 EHCLPDDVCWAGMGDLIDAM--GLRDCWVTPIRAHTGRIGGVLVVAHSEPTPIGLEDAQV 394

Query: 510 LRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +        I  EQ++    +   A  D LTG+PNR  F + L   +D +   + +   V
Sbjct: 395 IELAEQLLMIALEQQEHTRQLAYQAKHDALTGLPNRLLFEENLRRAIDGARHSERM-IAV 453

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D++K+IND LG  VGD +L+ L RR    ++  D LAR  G+ F ++L    N+ 
Sbjct: 454 LFIDLDRFKQINDTLGHTVGDTLLIQLARRFESCVRGSDTLARRGGDEFMLVLTDIVNAQ 513

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-R 687
           ++   A  + + +  P ++   E+ ++ASIG + + +       + + A+ AMY AKH R
Sbjct: 514 QVVKVAHRLMELLQPPFHIAGHELFISASIGASIYPTDGEDPDSLQRRADAAMYRAKHLR 573

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                     +    +R+ ++  L  A+E +EL L Y P +     +IV +EAL++W HP
Sbjct: 574 NNFQFFDPTTNQTTLERLRLENYLRRALERNELDLYYQPKVN-RQGQIVAVEALLRWKHP 632

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I+ S F+ +AEEL +I  I  + + R    I  W+      PI + +N++      
Sbjct: 633 DLGIIAPSRFVPMAEELGLIIPIGTWCMARAFSQICQWQR--PGRPISVAMNVSIIQFSQ 690

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E ++ ++ +T   PS   +  +ES+++G+       L  LR +G+ L +DDFGT  
Sbjct: 691 PGFIETVRTVLDETGLDPSLCIIELTESMLIGDQASVTQRLNDLRALGLKLAIDDFGTGY 750

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTIIAKDIYGEID 923
           S L YL  +P   +K + + ++     R     AI+ SII +A ++   ++A+ +  ++ 
Sbjct: 751 SSLGYLRRLPISILKIDRTFVSDIGTDRDDSGRAIINSIINLAHHLGMQVVAEGVETQLQ 810

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVK 961
              L  +GCD IQ      PL  +    LL   R P  K
Sbjct: 811 RDFLHSVGCDMIQGFFYTEPLPPSLFEYLLDSPRLPSPK 849


>gi|299769310|ref|YP_003731336.1| hypothetical protein AOLE_05330 [Acinetobacter sp. DR1]
 gi|298699398|gb|ADI89963.1| hypothetical protein AOLE_05330 [Acinetobacter sp. DR1]
          Length = 950

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/575 (22%), Positives = 265/575 (46%), Gaps = 11/575 (1%)

Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           Q  L     ++ I  +    E   L    +  + + ++  D   + +   P    + G +
Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDINPYYEKLTGFS 432

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       +       +  F T +   +    G    +F  + +  +  ++ + I  
Sbjct: 433 KSELLNKELFSIAINQKELQQQFHTSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +    I  YIG A D+TEQK+  + +      D+LT +PNR  + ++L   L   + +
Sbjct: 492 VKDEFHQITNYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ++ID+++  N+ L    GD++L    +R+  +     ++A L+ + F II 
Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNSDDFAIIY 610

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   I  +   + +++  P  +   E  +TASIG A +         +  +AE A+
Sbjct: 611 EISPIHPNIEQYCQNILQALNAPFYIDNHEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670

Query: 682 YHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L+D+ I+G EA
Sbjct: 671 SEAKRLGGNTISYYCNKAEHPYKTADLEQELRKAIQNDEFVIYYQPKINLLDQSIIGFEA 730

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W++      + + +NI
Sbjct: 731 LIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKNA-GYTNVQVSVNI 789

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++ +    L   +  ++ K     S ++L  +ES ++ N +  + LL  +++  IS+ L
Sbjct: 790 VAQQIHRGLLLNDLDEVLQKYNIQGSDLELEITESALLDNTDNVKTLLHAIKQRDISIAL 849

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DDFGT  S L+YL   P D +K + + ++     K+ AI+ ++I M K++   ++A+ + 
Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            E  +  L +  CD++Q    + P+    I+  L+
Sbjct: 910 TEEQVAYLQKQQCDFLQGYFFSRPIPAEQIIPYLQ 944



 Score = 89.6 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 113/374 (30%), Gaps = 42/374 (11%)

Query: 181 YKDTVNSFTLYRGIIIGVASLLAI-------FLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
           +  ++  F    G+ +   + L         + TI ++     +L     ++ V+LG   
Sbjct: 47  FLSSITIFNWSMGLTVASLTCLLFVPNILTHYRTINFIKKADLILQSICFISGVLLGASV 106

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
               F      +   +  I  A    +     + FL           +  Y+        
Sbjct: 107 TVIHFYLPQELVTLPDAHILIALFITSAHIIGLTFLTQ-------QPRYFYL---LFIPS 156

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
            +   ++ +       +      +I    T    Y   + Y++    I   +      I 
Sbjct: 157 TLPLLIAQFTHTPITQLPFYFAYNIAFIATILCAYATQRNYQK----ISQLLFRNKQLIQ 212

Query: 354 LWMAITKRLDNDIIQPALVGG--------LVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           +    T+  +   +Q              L     L+   V +        ++ + S   
Sbjct: 213 ISEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNEQLESHHY 272

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP----IRNWLPYIHINDR 461
             + A   +G   WDWDI   ++        I       +       +   L  +H +D+
Sbjct: 273 NLAFANETAGIRPWDWDIENQKL-------EITFFDQQKLTQTTVIHLNTILDRVHPSDK 325

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDI 519
             F   L   +          FR+   D  + W+    R ++        LR +G+  DI
Sbjct: 326 KLFNERLKQHLEGITDHFNINFRILRRDGSWRWIHDVGRVITRDPKTQKALRMVGMTRDI 385

Query: 520 TEQKKSLEGILCNA 533
            ++KK  E +  +A
Sbjct: 386 HQEKKDQEHLRLSA 399


>gi|114776871|ref|ZP_01451914.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Mariprofundus ferrooxydans PV-1]
 gi|114552957|gb|EAU55388.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Mariprofundus ferrooxydans PV-1]
          Length = 719

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/589 (22%), Positives = 260/589 (44%), Gaps = 21/589 (3%)

Query: 388 QHVLATGYFSQGIFSDG-------ERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATIL 438
           Q +       Q +           ER +  +  +  +++  DI         + +I  + 
Sbjct: 128 QRLQDFQAMHQRLQESEAQIRKVNERLNFLLTSTAAVIYASDISEHYATTFISDNIERLS 187

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G  + +        L  +H +D    R  L   +   RG  ++E+R +  D  + W+   
Sbjct: 188 GYPANTFTAEADFRLECVHPDDLAMVRNELKLALD--RGSSRFEYRFQHKDGHYFWVGDE 245

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +R   N +G +  ++G   DI+E K++ E ++  A+ D LTG+PNR  + DRL   +  S
Sbjct: 246 VRVEKNRHGQLE-FLGFMADISEHKQNEEKVIQMAYTDLLTGLPNRSLYFDRLKQAIAQS 304

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             + +    V+ +D+D +K IND LG   GD  L+ + +R+   ++  D LAR+ G+ F 
Sbjct: 305 HRN-HTTMAVLFMDLDYFKPINDELGHEWGDQALIEVGKRLQGCIRETDTLARIGGDEFS 363

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           IIL    +       A  +   I  P+ L      +  SIG    +S    +   ++ A+
Sbjct: 364 IILGDIASEQAACRIADKIISCIQEPMLLNHSSYVLGISIGIRIESSDYSDAETFMRLAD 423

Query: 679 LAMYHAKHRGGNHVESFRVSSFR-----SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            AMY AK  G N    +R S           + +++ L  A+ N+EL + Y P + L + 
Sbjct: 424 DAMYQAKEAGRNRCCVYRESGDTQLQGLHSELDMEKALRQALINNELVVYYQPKVDLKEG 483

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G  AL++WD    G +  ++F+ +A +  +I +I  ++L + +  I +W D      
Sbjct: 484 LITGTHALLRWDRGSEGMLQPAQFLPLANKTGLIVSIGEWVLRQASAQIRAWLDAGLQV- 542

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N+ ++ L   +    + +++ +   +P+ ++L  SE+ +M +       L  L  
Sbjct: 543 VPVSVNVTAEQLRHPDFSRLVASILDECALAPNLLELEVSEADLMRHGSFLTQALHDLSD 602

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIET 911
           +G+ +T+ +FG+    L  L  +P   +K + +L+           +  +II M   +  
Sbjct: 603 VGVKITMGNFGSGFFSLESLKAMPIHELKMDRALIGKIGHAGDSGQVANAIIAMGHILNH 662

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            ++A+ +     +  L     D +     + P+  + I   L +R  L+
Sbjct: 663 PVVAEGVETHDQLSFLRHHNTDGMLGYLSSPPVTADEITSHLTKRASLL 711


>gi|89896127|ref|YP_519614.1| hypothetical protein DSY3381 [Desulfitobacterium hafniense Y51]
 gi|89335575|dbj|BAE85170.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 596

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/565 (22%), Positives = 249/565 (44%), Gaps = 15/565 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +   R  + V  S D+    +        +P +  ILG       G        +  
Sbjct: 27  ALKNLQRRFQVLVQDSHDVFEIINSDGTIQYISPAVEKILGYKPEERIGKPAY--ELLEP 84

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS---NGDILRYIGI 515
            ++  F+ +L     +    +Q E +++    Q   +   +R   +     G IL +   
Sbjct: 85  TEKYKFKQMLSLAFNHPDQVVQEEIKIKTKAGQEIILSCDMRNKLSEPSIQGVILNWRVS 144

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           ++D   + +        A  D LT +P R +F   L+  +  +         ++++DID+
Sbjct: 145 SSD---RNREDSQAKAPATLDELTRLPARGAFESLLSQHMAEAR--GEEALALIIVDIDR 199

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IN  LG   GD +L  ++RR+  L     +L R SG+++ I+               
Sbjct: 200 FKYINSYLGYEHGDQLLRQISRRLRLLCTDQVLLCRFSGDQYAIVAARGEGQDDYLPLVE 259

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + +    P  + E ++ ++ S+G + +      S  ++K+A  A+   K  G  H + +
Sbjct: 260 EVLRLFDAPFIVDEHKLDISVSLGISLYPHDAQDSETLVKSAYAALLRGKAAGKKHYQFY 319

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                  +     ++ D+  A++  +  + Y PI+ L   E++ +EAL++W HP  G IS
Sbjct: 320 SADVEHKNYREFLLRRDMQKALKEGQFAVHYQPIVNLYTNEVLAVEALLRWKHPLCGMIS 379

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ I EE   I  +  ++LE + R    W+ +   PP+ + IN +S    +    E 
Sbjct: 380 PAEFIPIMEETGFIVDMGKWLLEEVCRSHKQWQKEGL-PPLKVSINCSSVQFAEECFVES 438

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +QA++ K    P  + +  +ESV++ N ++    L +L++IGI + +DDFGT  S LSYL
Sbjct: 439 IQAILDKMQLDPRYLIIEITESVLIDNAKKVIADLQKLQEIGILVAVDDFGTGFSSLSYL 498

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K + S +      + +  I  S+I +A+ +   ++A+ I     +  L R  
Sbjct: 499 LTFNIDIIKIDSSFIQNIPTNKTSTIITHSVINLARELNIKLVAEGIESPEQLSHLKRFN 558

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C   Q    + P+  + + +++  +
Sbjct: 559 CHTGQGYLYSKPIPQHQLAEIIANK 583


>gi|293607662|ref|ZP_06689994.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292813947|gb|EFF73096.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 687

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 214/432 (49%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E ++  A  D LT +PNR    DR+   ++ +         V+  D+D +K +ND  
Sbjct: 255 EANEELVQLALHDTLTKLPNRILLEDRMEQAIESANRHKGY-FAVLFFDLDGFKAVNDAY 313

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ L +RI + L+  D +ARL G+ F I+L         A+ A  + ++IA 
Sbjct: 314 GHHTGDALLIDLAQRIRQALRTQDTVARLGGDEF-IVLSEVIEPTDAANVADRLIEAIAR 372

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ +   E+ VT+S+G A + +    +  +L NA+ AMYHAK  GG     F  S     
Sbjct: 373 PVMVYGHEVLVTSSVGIAVYPNDGEDTHSLLTNADAAMYHAKRLGGTGYSFFEPSMNADA 432

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I+   DL LA E  +  L Y P        I+G EAL++W+HP  G +   +F+  A
Sbjct: 433 HEQIELLHDLRLAQERGQFVLHYQPKYEAPAGPIIGAEALLRWNHPTRGLVGPDQFIPTA 492

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I +I  +++    R +  W +        I +NI++       L E +++ +++ 
Sbjct: 493 EKTGLILSIGEWVINEACRQMREWINA-GQGNWTIAVNISALQFAHASLVETVRSALARH 551

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + L  +ES  M + E S  +L RL  +G+++++DDFGT  S L YL  +P   +
Sbjct: 552 DVPPACLTLEVTESTAMRDAEASLAVLKRLSGLGVTISIDDFGTGYSSLLYLKRLPATEL 611

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +       +  AI+ +I+ +A+ +   I+A+ +      K LT +GCD +Q   
Sbjct: 612 KIDRGFVNQLENDNEDAAIVSAIVALAQQLNLRIVAEGVETAAQQKFLTGLGCDSLQGFL 671

Query: 940 VASPLGFNSILK 951
           +  P+     L+
Sbjct: 672 LGRPMPATEFLE 683


>gi|229491950|ref|ZP_04385770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
 gi|229321163|gb|EEN86964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodococcus erythropolis SK121]
          Length = 791

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/777 (21%), Positives = 319/777 (41%), Gaps = 52/777 (6%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
               +      + W  L         LS +V L   +  ++R      ++ S I F   +
Sbjct: 32  LNRRLEFTAGILPWAFLIAAIA----LSTIVVLLPADTGMFRWVWPSVVAVSSIAFSLYW 87

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L  +R        T  G+  I ++        +       +   + ++  +  +    + 
Sbjct: 88  LGRSRLGISESQTTELGVLTIQVVVWGVLLACLALVLFPILDPGNELVLTSTLMGGIAVG 147

Query: 333 GYERAVL--LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
            +   +       WI +    +             ++   L   ++ +V L   T++   
Sbjct: 148 VFPTLMFRGFTLIWIGLVGLGLAGGFWTEPEPSRYVLVGVL---MIFLVSLYSGTLLLAK 204

Query: 391 LATGYFSQGIFSDGER--QSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           L        + ++ ER    L +     G+ D +W+ D      T +   A  +GL +  
Sbjct: 205 LFDKRLHAELVAEDERDLVELLLNDLEDGAQDWLWETDSRGIASTVSYRFAEQVGLPAAQ 264

Query: 445 MHGPIRNWLPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + G   + +          +     D       +   +R   +Q   R         W  
Sbjct: 265 IRGRTMHEILIGIGASRTDVGRKSLDLLAANFQAGTAFRDLTMQVVVR-----GDTRWWS 319

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +   P S  +G    + G+ +DIT      + IL  A  D+LTG+ NR SF  +L++ + 
Sbjct: 320 MSGHPGSG-DGATYGWRGVGSDITHSYHQRQNILRLAEIDSLTGLRNRYSFNAQLSSRI- 377

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                D  R  + ++D+D +K IND LG  +GDDVL  +  R+  +L+  +I  RL G+ 
Sbjct: 378 ----RDGHRVWLAILDLDNFKSINDRLGHHIGDDVLRDVASRLHSVLRSNEICGRLGGDE 433

Query: 617 FGIILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           F I           ++ ++      +  S   P +L+  +I + AS+G+ S      +  
Sbjct: 434 FAIAFDDVAFDDIGSADEVEKRFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLE 493

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           +++  A+LA+YHAK  G N + +F        + R     DL  A+ + E  LVY P + 
Sbjct: 494 DLVIVADLALYHAKESGRNQIRAFDATLRDRATGRARALLDLRRALIDEEFELVYQPQVS 553

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                +VG EAL++W+HP  G +S  +F+ +AEE  +I  I   +L        +W +  
Sbjct: 554 AATGVVVGFEALLRWNHPTSGLVSPGDFISVAEETGLIVPIGAGVLRAACTAATTWPE-- 611

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +N++   L  +   + ++  + +    PSR+++  +ES+V+ + +  R +L 
Sbjct: 612 ---DIRVAVNVSQVQLRSSRYVDSVRRTLIEVNLHPSRLEIEVTESLVIDDAD--RDVLV 666

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----RIAILRSIIPM 905
           +L  +GI++ +DDFGT  S ++ L  +P D +K + + +          R A+LR++I +
Sbjct: 667 QLSALGIAIAMDDFGTGFSSVASLARLPLDRLKIDRAFVAPLDADPSNSRFAVLRAVIAI 726

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           AK++    +A+ +  E     +T  GCD IQ      P+    I   L  R      
Sbjct: 727 AKSLGLDTVAEGVETERQRAIVTECGCDVIQGYLEGMPIRAAEIPHYLNGRLGGSSR 783


>gi|169826660|ref|YP_001696818.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
 gi|168991148|gb|ACA38688.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
          Length = 782

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 223/426 (52%), Gaps = 6/426 (1%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LT +PNR+ F+  L   +  ++  +  + +++ ID+D +K++ND LG + GD++L
Sbjct: 351 AFYDPLTNLPNRRQFVFTLEQAITQAS-SEQSKFSIIFIDVDNFKQVNDTLGHSAGDELL 409

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +  ++   +    ++ARL G+ F I+L    +   +     ++R S   P  +  +  
Sbjct: 410 QKVAEQLQSSIGSEGVVARLGGDEFVILLEHRADHAYLEKMLSSLRDSFVQPFTIHGQIT 469

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
            V  S+G AS+    +T  E+LK+A++AMY AK  GGN+   F          +  I++ 
Sbjct: 470 FVQMSLGIASYPIDGVTQEELLKHADIAMYKAKESGGNNHRFFDNKMNELVIKKNQIEQM 529

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           + LA+  +E+ + Y P I     ++ G EAL++W  P+ G +S  +F+ IAE+   I  I
Sbjct: 530 IRLALARNEINVHYQPQIEPATGKLRGFEALVRWKSPELGFVSPEDFIPIAEKTGFITQI 589

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + +++ +     +  + Q    P  + +NI++  L   +  + +Q ++++T   P  +++
Sbjct: 590 DEWVMYQACLKNVELQHQFGY-PFLMSVNISALQLERTDFVDKVQLILNETKLKPEYLEI 648

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+++ + E S  +L +L  +G+ +  DDFGT  S L+YL  +P  T+K + SL+  
Sbjct: 649 EITESILVESFESSICILRKLENLGVKIAQDDFGTGYSSLNYLSLLPIHTLKIDRSLIQN 708

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            T       I+ SII +A  +   ++A+ +  +     L    CD++Q  + + P+  + 
Sbjct: 709 MTSATAEKTIIESIIQLAHKLGHDVVAEGVETKEQYILLKEWNCDFVQGYYFSRPVSEDM 768

Query: 949 ILKLLK 954
           +++ L 
Sbjct: 769 LVEYLT 774


>gi|39933447|ref|NP_945723.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39647293|emb|CAE25814.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domains [Rhodopseudomonas palustris CGA009]
          Length = 838

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 134/564 (23%), Positives = 257/564 (45%), Gaps = 14/564 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q   A     Q   +  E   L         W   +   R   +P++  +LGL   + 
Sbjct: 264 ITQLAAARTLLDQRTGALEEAHRL----GRIGTWTHRLDTGRTVWSPELYQLLGLEPDAF 319

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                   PY   +D      I    +         + R+   D     + I  +    S
Sbjct: 320 EPTYEGTEPYFLDDDAARLLKIQKRVLRTSTTE-ATDIRILHTDGTPRDLAIICKAEI-S 377

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG+++  IG A D+T++K++   +   A+ D LTG+ NR  +  +L  + +    +    
Sbjct: 378 NGNVIGLIGTAQDVTDRKEAERRLEQLAYTDPLTGLANRALYKRKLADLFENPMAEHGQN 437

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-E 624
             + +ID+D++K++ND LG + GD +L+ +   + + L     +AR+ G+ F ++  S  
Sbjct: 438 -ALYLIDLDRFKEVNDSLGHSTGDSLLIHVAGVLRQELGPQAFIARIGGDEFAVLTNSPN 496

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +       A  +   +++P+ L E E  + A+IG A       T+ +  +NA+LA+Y A
Sbjct: 497 TSVEATTALADRLIAKLSVPVELAEGEACIGATIGIAILPEHGATAEKASRNADLALYMA 556

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G    + F    +     ++ +   L  AV++  L   Y P I L    ++G EAL+
Sbjct: 557 KEAGRGRAQLFEPMYAEAVDQKLDLGRRLRHAVDSGGLNTHYQPQIDLKTGRVIGFEALL 616

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS +EF+ IAE   +I  +  ++L    + +  W D    P   I +N++ 
Sbjct: 617 RWSHPERGPISPAEFIPIAETTGLIVDLGHWVLRDACKQMRGWLDAGL-PARTISVNVSP 675

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLD 861
             + + +  + +  +++ T   P  + L  +E++ + + ++     L  L K+GI L LD
Sbjct: 676 AQIWNGDFEKVVATVLADTGLPPELLCLELTENLFVDHTKQKVSTTLAALSKLGIQLALD 735

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S L YL  +PF+ +K + S + G     ++  +L  II ++  +  +++A+   
Sbjct: 736 DFGSGYSSLGYLTRLPFNRLKIDRSFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAE 795

Query: 920 GEIDIKELTRMGCDYIQDSHVASP 943
            + ++  L    CD++Q    + P
Sbjct: 796 LQAEVDLLAAFDCDFVQGYAFSKP 819



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 20/148 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATI 437
           F +++         + +    +R +  V  + D  W+       +           + T+
Sbjct: 131 FGIVRDATPETSALRQLAVSEQRLADFVSTASDWCWESGPDHRLLPYPKSLDGNAALQTV 190

Query: 438 L--GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
              G A   +           +H +D +  R               + +     D     
Sbjct: 191 ASGGKARWELAYAPDEEGSMALHRDDMEAHR-----------PFRDFIYTSIGNDGSRII 239

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +    +P+   +G  L Y G A+DIT+ 
Sbjct: 240 ISTSGKPIFADDGTFLGYRGTASDITQL 267



 Score = 38.4 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +     +    +     R     E ++   D +    ++   P  ++NG + R  GI  D
Sbjct: 78  DSHAILQAHYAACWTEGR-PFAVETKLIKPDGRLLDCVVHGEPEFDANGQVQRVFGIVRD 136

Query: 519 IT----EQKKSLEGILCNA 533
            T      ++        A
Sbjct: 137 ATPETSALRQLAVSEQRLA 155


>gi|269965387|ref|ZP_06179507.1| ScrC (sensory box/GGDEF family protein) [Vibrio alginolyticus 40B]
 gi|269830033|gb|EEZ84262.1| ScrC (sensory box/GGDEF family protein) [Vibrio alginolyticus 40B]
          Length = 776

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 219/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 335 IERRKASEKELAFQAKYDTLTNLPNRSYGSERLALELIRASRSGS-KVLVMFIDLDHFKQ 393

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+ ++ +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 394 INDSMGHFVGDEILKLSAQRLYQVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 453

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +   P      E  +++S+G + +      + ++L  A++AMY AK  G +    +  +
Sbjct: 454 SAFNDPFVWNNHEFFLSSSVGMSVFPDDGDNAEQLLACADMAMYRAKQDGRDGFCFYNHN 513

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ N  L L Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 514 MNQDLQRYLDLENRLRSAISNQLLELYYQPIIELSSGKIVGAEALMRWNDDKYGFVNPEE 573

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  I  F +++  R    W+      P+F+ +N +S        L   ++
Sbjct: 574 FISIAEKNGLIHQIGEFAIQQACRQAAQWQSL---TPLFVSVNFSSVQFRYCERLLTFIK 630

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 631 HSLEESGLPSDKFDIEVTESLLFNHDSELLDMLNNLRALGTKLTIDDFGTGYSALSYLQK 690

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK ++  I+A+ I  +  +  L  + C+
Sbjct: 691 FPFDRLKIDRSFMQNMFENDSDRELVNVIIAMAKALDLKIVAEGIEEQRHVDYLKNLNCE 750

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + PL       LL +
Sbjct: 751 FGQGFHYSRPLPAKDFEALLAK 772


>gi|330446221|ref|ZP_08309873.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490412|dbj|GAA04370.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 984

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/570 (21%), Positives = 265/570 (46%), Gaps = 24/570 (4%)

Query: 401 FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYI 456
            S  ++ +LA      + + +   D     VT       + G +S  + G   R      
Sbjct: 415 VSTVQQLNLAKTVFDNTSECIVITDSNNHIVTVNQSFEAVTGYSSEEVIGKDPRILASGF 474

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D+  +  + D       G+ + +   R  +   +   + I  + + N +++ Y+G+ 
Sbjct: 475 H--DKAFYEEMWDCV--EHAGQWKGQLYNRRKNGNVYPEEMTINKVEDDNHEVVNYVGVF 530

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-----SATDDNLRPTVMVI 571
           +DI+ ++++ + +L  A  D LT + NR+ F +R+   ++           N   +V+ I
Sbjct: 531 HDISVRQQTEKELLFYANNDALTTLMNRRCFTERVEQEINSVCEQVKKGGCNQEFSVLFI 590

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND+ G  VGD +L  +   + +      ++ R  G+ F I+L  ++++    
Sbjct: 591 DLDDFKSINDLYGHDVGDKLLKHIAEILLDFCSKETLVCRYGGDEFAILLKGKSSA-FAK 649

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            +A  + +++++PI +   +  VT SIG +++  S +T   +LKNA+ AMY  K  G N 
Sbjct: 650 QYAQKLMRALSVPILIDALQFNVTISIGISTYPESGVTHQALLKNADYAMYEQKRNGRNG 709

Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +           + +K+ L  A+   ++ + Y PI+ +   +I   EAL +W   + 
Sbjct: 710 ISIYDAQLQSEYIRKLRLKDRLIKAIAEKKIQVYYQPIVDIETGKICKFEALTRWFDEEE 769

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS   F+ +AE   +I  +   + E+  RD+    +Q     I + IN + ++     
Sbjct: 770 GYISPVIFIEMAETYGLIGQLGRVVFEQACRDLAYMHNQGYD-DICMSINRSVREFA--- 825

Query: 810 LCEG--MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           L +   +  +I +   + ++I +  +ES  +        LL    + GI + +DDFGT  
Sbjct: 826 LYDQKYIYDIIDEHGLAYNKIMIEITESAALDEGNNILELLSEFAQKGICVAIDDFGTGY 885

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S +S +     + +K + + +    +  +   ++  ++ M++ +   ++A+ +  +  ++
Sbjct: 886 SSMSAIIANKPNVIKIDRNFIVDIEQSVESQILVSLVMDMSRKLHLDVVAEGVETKAQLQ 945

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L++MGC YIQ  + +  +  ++ + LLK+
Sbjct: 946 LLSKMGCHYIQGFYFSPAVNIDAAMVLLKQ 975



 Score = 79.6 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 372 VGGLVLIVILIGFTVIQHVLA-TGYFSQGIFSDGERQSLAVLG-------------SGDI 417
           V G+V+ + L  F + Q  +  +      + S+ +  +L                 +   
Sbjct: 117 VIGIVVCLFLHPFVLSQEQIDWSEEMGHLLGSELQYLALLSEQKLLLGEMEASQRVAKLG 176

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
            W WD++ +  T + +   I  L    +H  ++     IH  DR+   T +++ +     
Sbjct: 177 NWQWDVLTNTYTWSKEACRIYELE-NCLHPDLKFVHSSIHPEDRERVITFMNNIITSEHT 235

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +R+     +  ++      + + NG      GI  DI+E
Sbjct: 236 GYNIIYRLLLPSGKIKYVRKESVLIKDDNGKTTLIRGIIQDISE 279



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 7/143 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +IQ +    + S  +    ++  +      + VW++        T+P +  IL +    
Sbjct: 272 GIIQDISEFYHISTELSKTSDKLHITYNAVAEGVWEYHFNTREKVTSPKVWDILKIE-ER 330

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA---DNQF--HWMIIRI 499
           +   +   +  IH ++R      +          L ++FR+      +  +  HW   + 
Sbjct: 331 VIHSLYELMRLIHKDERKVVLDAIRKLRNNDSQSLCFDFRLNPKYVTNISYIEHWFQCQG 390

Query: 500 RPM-SNSNGDILRYIGIANDITE 521
             +  N+ GD  +  G+  DIT+
Sbjct: 391 SVVAVNAFGDTEKVAGVLTDITD 413


>gi|144898379|emb|CAM75243.1| PAS:GGDEF [Magnetospirillum gryphiswaldense MSR-1]
          Length = 571

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/572 (22%), Positives = 250/572 (43%), Gaps = 16/572 (2%)

Query: 398 QGIFSDGER-------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           Q   ++ ER          A   + + V         +   P    I G     + G   
Sbjct: 2   QQRLAELERENAELRLFRAAFDMAAEAVAVCGPDWRLLVVNPAFTAITGFLPEEVCGRHA 61

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L     +    F   +D  +  R    + E   R    + +   + +    +  G   
Sbjct: 62  EMLYASLGD--GTFLVEVDEHLR-RGSSWEGEVWSRRKTGEPYRQSLSVACEHDMRGGPS 118

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R++ +  D++E + + E +  ++  D LT +PNR   LDRL   L L+   +N R  ++ 
Sbjct: 119 RHVLMFRDVSEARDNAEKLWRHSNYDTLTELPNRGLLLDRLLQALVLAGR-ENCRAALLF 177

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           I +D +K IND LG+ VGD VL     R G  L+  D L R  G+ F  +L   +   ++
Sbjct: 178 IGLDGFKTINDTLGMTVGDMVLRESALRFGRCLRKGDTLGRFGGDEFIAVLPHIDTIDEV 237

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + +S+  P+ +   +I ++ SIG + W         +++N+  A+ HAK  G  
Sbjct: 238 EAVVRTILESLQEPLLIEANQILLSCSIGISLWPGDGEDVETLMRNSSSALEHAKAAGRG 297

Query: 691 HVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F   + +    R  +  +L  A+E++E  LV+ P++ L D  + G EAL++W +  
Sbjct: 298 TFRFFTPTMDARAQARSRLAGELSEALEHNEFSLVFQPVVNLADGSVGGAEALLRWQNRY 357

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G ++  +F+ +AEE+ +I  I  ++     R+  +W+       + I IN++ + +   
Sbjct: 358 IGAVNPDQFVPLAEEMGLILPIGEWLTLAACREAKAWQQAGLG-DLRIAINVSPRQVQQT 416

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           ++   ++  + ++  SP  + +  +ES+++ +       L R+R +G  + +DDFGT  +
Sbjct: 417 DIATTLRRALDESGLSPRLVTVEITESLILNSGTEIIRKLERVRDLGARIAVDDFGTGYA 476

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL + P D +K + S ++   +      ++ +II +  ++   ++ + +        
Sbjct: 477 SLSYLKHFPVDILKIDRSFVSEALNNADDARLIEAIIALGHSLGMKVVGEGVETRQQQAF 536

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           L   GCD  Q    + PL        ++   P
Sbjct: 537 LVERGCDLAQGYRFSPPLSAERFRDFVRNFEP 568


>gi|298500769|ref|ZP_07010572.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MAK 757]
 gi|297540550|gb|EFH76608.1| PAS domain S-box/GGDEF domain-containing protein [Vibrio cholerae
           MAK 757]
          Length = 684

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 254/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNH--VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N     + +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKSNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+ +AE+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|115526079|ref|YP_782990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115520026|gb|ABJ08010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 894

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 136/581 (23%), Positives = 264/581 (45%), Gaps = 21/581 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGL 440
               +   +      S+ + +  +     +      +     +    +       TIL  
Sbjct: 312 FLIALFDDITEKRELSRELVNAKKFLERVIDNVPICLTVQSAVDGRYLLANRSAETILNR 371

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G  R         +        D+    R   L  E  +   D      + R +
Sbjct: 372 LREDAIG--RTVAEIFDPQE-GKLIAERDAIAIKRGQLLAEEQPISTKDG-LRMFVTRRQ 427

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G+    I    D+T+Q+++   +   A+ D LT +PNR +FL  LT +++ +  
Sbjct: 428 TVLDEFGEPQYLIKTHEDVTDQRQTEARMAHMAYHDGLTELPNRAAFLQALTQMIE-ACC 486

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D      V+ +D+D  K+INDV G AVGD +L+ +  RI        +++RLSG+ FG+I
Sbjct: 487 DTADEFAVLSVDLDGLKEINDVFGHAVGDKLLIEVAERIKTAS-RGGVVSRLSGDEFGLI 545

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +          D A  + +++     +  + + +  + G A++ ++   ++ +L NA  A
Sbjct: 546 IDGPQ-PSSALDLADEVARAVGEGFQIDGKAMRIGVTTGIATFPNNGQDAASLLANAGAA 604

Query: 681 MYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE---- 734
           ++ AK   RG   +    +     DR ++ +DL  A++N E+ L Y P  R   +     
Sbjct: 605 LFRAKAKMRGSVSIYEPEMDQQIRDRRVLHQDLSKAIKNGEISLYYQPQARGHGQTGHDD 664

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I G EAL +W HP  G +  S+F+ +AEE  +I  +  ++L    R+  SW       P+
Sbjct: 665 ITGFEALARWRHPTRGFVPPSDFIPLAEESGLIVELGEWILREACREAASWAK-----PL 719

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++    L+++L   +  ++ +T   PSR++L  +E V++ + +R   LL RL  +
Sbjct: 720 QVAVNLSPAQFLNSDLVSAVHRILLETGLKPSRLELEITEGVLIEDFDRGLSLLRRLTSL 779

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S L+YL   PFD +K + + +       +  AI+R++I +   +  +
Sbjct: 780 GVKISMDDFGSGYSSLTYLQAFPFDKIKIDRAFVMNLGHNPQSAAIVRAVIGLGHGLGVS 839

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+A+ +  +  +  L + GCD +Q   +  P       +L+
Sbjct: 840 IVAEGVETQQQLDFLVQEGCDAVQGYFIGRPHPIEHYARLV 880


>gi|320323919|gb|EFW80003.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328056|gb|EFW84061.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330875742|gb|EGH09891.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 732

 Score =  470 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/581 (22%), Positives = 231/581 (39%), Gaps = 17/581 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+     ++   +     +        R       S D +   D     ++       I
Sbjct: 146 LVLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494
            G  S    G   +    I    R      L          +            D     
Sbjct: 206 FGHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRAASGGPTFIIGKSINLTAIHRDGHTIP 263

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + +       G+      I  D+T++ ++ + +   A  D+LTG+ NR +   R+   
Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                 D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G
Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML
Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D
Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+     
Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE 556

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR
Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A    
Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + A+ I        +    CD  Q      P+  +   +
Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|312962173|ref|ZP_07776665.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
 gi|311283510|gb|EFQ62099.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
          Length = 819

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/595 (19%), Positives = 247/595 (41%), Gaps = 13/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R+   ++    +   + +++L      + +     F++ +  + ER  + +   GD V  
Sbjct: 201 RMILRLLLITNLATALGLIVLALLRTRKLLAQRHAFAEALKDEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+        P    +    S    G P+      +  + + +  T+++  +  R RG 
Sbjct: 261 TDVDGAITYMNPAAEALTHWKSVQAQGLPLAALFNLLDDDAQPDGLTLIEHILKGRLRGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            ++   ++  D     + +   P+ ++ G I   + + +D+T++++ +  +   A  D L
Sbjct: 321 SEHSKTIQRVDGSTVSVTLVGAPIRSA-GKISGAVLVLHDMTQERQYIANLSWQATHDAL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR+ F  RL  +L+ +      R  +M +D+D++K +ND  G A GD++L  +   
Sbjct: 380 TGLANRREFEYRLEQVLNPA-RHQGERHALMFLDLDQFKLVNDTCGHAAGDELLRHICAL 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L+  D LARL G+ FGI+L +                  ++      R    T SI
Sbjct: 439 LQSDLREGDTLARLGGDEFGILLENCPAPTAEKIAESLRHTVQSLHFVWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLA 714
           G    +++  T    L+ A++A Y AK +G N V+ +         R   +   + L +A
Sbjct: 499 GLVHISNTPTTLESSLRAADMACYMAKEKGRNRVQVYHSDDSELSVRFGEMAWVQRLHMA 558

Query: 715 VENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           +E +   L    I      +     +E L++        I    F+  AE   ++ +++ 
Sbjct: 559 LEENRFCLYAQEIASLGHTEAGSGHIEILLRLHDEAGRIILPDSFIPAAERYGLMTSLDR 618

Query: 773 FMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           +++E + + I     +    P+ +  IN++   + D++    ++         P  I   
Sbjct: 619 WVVENVFKIIARCMHERPARPMAMCAINLSGITIGDDDFLGFLREKFDSYRIPPEMICFE 678

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K +GS +   
Sbjct: 679 ITETSAIANLGSAIRFINELKALGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDM 738

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                  A++  I  +   +    IA+ +      + L  +G DY Q   +  P 
Sbjct: 739 LDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPQ 793


>gi|16330004|ref|NP_440732.1| hypothetical protein slr2077 [Synechocystis sp. PCC 6803]
 gi|1652490|dbj|BAA17412.1| slr2077 [Synechocystis sp. PCC 6803]
          Length = 732

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 218/436 (50%), Gaps = 4/436 (0%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K S   +   A  D LTG+ NR   L RL         +   R  ++ ID+D +K IND
Sbjct: 293 RKASQNQLSYQALHDTLTGLANRALLLQRLEFAGHQIKNNPKSRFALLFIDLDHFKLIND 352

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G +VGD +L+ +  ++   L+  D+  RL G+ F I L S     +  D A  +   +
Sbjct: 353 SWGHSVGDALLIKIAEKLQINLRETDLAVRLGGDEFVIFLESITEIKQAIDVAERILIHL 412

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +P+ +  +E+ V ASIG    +        ++++A++AMY AK+ G N    F  S  +
Sbjct: 413 RLPVQIQAKELFVKASIGIVIGSIHYYEPERLIRDADIAMYQAKNNGRNQYAVFDPSMHQ 472

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +   R+ ++ D   A+E   L L Y PII L+++ + G EALI+W HP+ G I+  + + 
Sbjct: 473 TILERLSLEHDFRKALEQETLELYYQPIISLVNDRLQGFEALIRWQHPEKGYINPEQLIA 532

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  +++++  + I  WR+  N   I++ IN++   +      E ++ ++ 
Sbjct: 533 IAEETGLIIILGQWIMQQACQQIAQWREITNDDKIYVSINLSPNQICRPLFVEEIENILQ 592

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T      + L  +E V++ + E     L +++  GI +++DDFGT  S LSYL  +P +
Sbjct: 593 TTKLDGDALVLEITEGVLIQHLEIVAECLKKIKSHGIKISIDDFGTGYSSLSYLYRLPVN 652

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +   TE     +I+++II +   ++   +A+ +     +  L +MGC   Q 
Sbjct: 653 YLKIDRSFINQITEDSPSQSIVKTIITLGDLLDIQTVAEGVETNDQLNLLKKMGCGLGQG 712

Query: 938 SHVASPLGFNSILKLL 953
              + P+    I   L
Sbjct: 713 YFWSEPMTVREIDCFL 728


>gi|113867267|ref|YP_725756.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113526043|emb|CAJ92388.1| predicted signal transduction protein containingCHASE, PAS, GGDEF and
            EAL domains [Ralstonia eutropha H16]
          Length = 1124

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 217/440 (49%), Gaps = 6/440 (1%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++++ E +   A  D LTG+PNR  F       L  +         V+ +D+D++K +ND
Sbjct: 672  RRQAEENLRFIANHDALTGLPNRLMFKAEFEQALTRARASGQALH-VIFVDLDEFKVVND 730

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             +G   GD VL  +  R+   L+  +++ R  G+ F ++L  + +S  +      ++ ++
Sbjct: 731  TIGHNAGDIVLREMADRLRGSLEEVELITRFGGDEFVVLLDPKGDSTILDRTIARIQAAL 790

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            A    + E E+ +TASIG +S+         +LK+A+LAMY AK  G N  + +      
Sbjct: 791  APGFVVNESELRMTASIGISSFPEDGSDWQTLLKHADLAMYGAKQLGKNGYQFYCRGMSA 850

Query: 702  SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            S +    ++  L  A+E  E  L Y P I L       +EALI+W HP+ G +   +F+ 
Sbjct: 851  SLQRRIDMESHLHRALEQDEFILYYQPRIALASGACTAVEALIRWRHPELGLVMPGDFIP 910

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             AE+   I  I  + L    R   +WR Q   PP+ + +N++++   D  L   +   + 
Sbjct: 911  FAEQSGAIVEIGAWALREACRQNAAWRAQGL-PPVRVSVNLSARQFADKSLRLTIIDALR 969

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +     + ++L  +ES+VM + E++   L RL++ G+ L +DDFGT  S L+YL   P D
Sbjct: 970  QAGLPGNLLELELTESMVMRDAEQASSWLSRLKRTGVRLAIDDFGTGYSSLAYLSRFPID 1029

Query: 880  TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            TVK +GS +     +     I  ++I +   +   ++A+ +  E+ ++ L R GCD +Q 
Sbjct: 1030 TVKIDGSFVRYIPESRSDTQITSAVIGLGHRLGLEVVAEGVENEVQLEFLRREGCDEVQG 1089

Query: 938  SHVASPLGFNSILKLLKERF 957
             + + PL    I   L  R 
Sbjct: 1090 YYFSHPLPPAKITAFLASRM 1109



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 67/197 (34%), Gaps = 10/197 (5%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIF 401
           W++ F           + L   ++   L+  ++L  +   +  +  + V      +  + 
Sbjct: 338 WVIAFAADAKAISGPQRYLPGLVVISGLIISVLLGWLAYALSSSRARAVAVADQMTHSLR 397

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                 + A   +    W  D+ +D    + ++A +LGL               I    R
Sbjct: 398 DSQAALAEAQQIAHLGDWRIDLDQDIAHFSQEMARLLGLRGD--KPTPEALFQAIDAGHR 455

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              R  + + +   R   ++E   R+   +  W+ +        +  +LR  G A DI++
Sbjct: 456 AVLRERMRTAL-QDRQPFEFECPYRSRRGRRGWLHLIGHAHGAPDSAVLR--GTAQDISQ 512

Query: 522 QKKSLE---GILCNAFQ 535
           ++ + +        A  
Sbjct: 513 RRSAEQARTQEHQIALH 529


>gi|163855670|ref|YP_001629968.1| signalling protein [Bordetella petrii DSM 12804]
 gi|163259398|emb|CAP41698.1| probable signalling protein [Bordetella petrii]
          Length = 703

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 219/436 (50%), Gaps = 7/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   + + +   A  DNLT +PNR    DRL   ++ +   + +R  +M +D+D +K +N
Sbjct: 251 ELADANQELTYLALHDNLTKLPNRVLLEDRLGQAMERARR-EKIRFALMFMDLDGFKAVN 309

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DV G  +GD +LV+   RI E  +  D +AR+ G+ F  +L   +        A  +  +
Sbjct: 310 DVYGHLMGDMLLVAAAGRIVENTRGSDTVARVGGDEFV-VLAQVDEPTDAGVLASKLVAA 368

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           I  P  +   E+ V+ SIG A +  +  +  E+L NA+ AMYH K  G +    F  S  
Sbjct: 369 IGEPYLVNGHELHVSTSIGIAIYPGNGESQDELLTNADAAMYHVKGTGRDDYCFFEASMT 428

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +V + +DL +A++ +EL L Y P        I GLEAL++W HP  G +    F+
Sbjct: 429 ANAHGQVQLLQDLRMALKRNELVLYYQPKFTAPHGPITGLEALLRWKHPAHGMLGPVSFI 488

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I  ++L    R +  WRD        I +N+++  L  + L E ++  +
Sbjct: 489 PLAEKTGLIVPIGEWVLNEACRQMAEWRDD-GREDWTIAVNLSAVQLAHSGLVEAVRGAL 547

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P R+ L  +ES  M + + S+ +L RL  IG+ +++DDFGT  S L YL  +P 
Sbjct: 548 DRHGLEPHRLVLEITESTAMRDVDSSQTILQRLHDIGVRISIDDFGTGYSSLLYLKRLPA 607

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +       +  AI+ +I+ + + ++  ++A+ +      + LT +GCD +Q
Sbjct: 608 SELKIDRCFVHDLACGTEDAAIVSAIVALGQTLDLRVVAEGVETAEQQEFLTSLGCDTLQ 667

Query: 937 DSHVASPLGFNSILKL 952
              +A P+  + ++ L
Sbjct: 668 GYLLAYPMQADEVIVL 683


>gi|329896030|ref|ZP_08271266.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC3088]
 gi|328921990|gb|EGG29354.1| sensory box/GGDEF family protein [gamma proteobacterium IMCC3088]
          Length = 594

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 131/462 (28%), Positives = 239/462 (51%), Gaps = 25/462 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +   K+  + +   A+ D LT +PNR+SF + L  ++ L+  + +    VM ID+D +K+
Sbjct: 133 VQALKRQEDRLRYLAYYDPLTSLPNRRSFTEELDRLV-LTHHNKDAHVAVMFIDLDHFKR 191

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPD--------------------ILARLSGNRFG 618
           IND +G A GD +LV + +R+ + L                        I+ARL G+ F 
Sbjct: 192 INDSIGHARGDRLLVEIAKRLTDQLSDYGDINILSDVGDYQYLGTEESIIIARLGGDEFT 251

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++ +  +  K+ D A  +  S++ P+ L      VT SIG A +         +++NA+
Sbjct: 252 VVIPNVEDDEKVTDIAKRILHSLSQPVELQSHNPVVTPSIGIALFPKDGTDPDTLVRNAD 311

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G +    ++        + + ++E+L  A+  ++L L Y P++   D  + 
Sbjct: 312 TAMYAAKSMGRSCYRFYKDDMNSSAVELLKMEEELREALVENQLELHYQPLVNSSDGALA 371

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           GLEAL++W+HP+ G IS  EF+ +AE+   I  +  ++++   +D   W +QA      I
Sbjct: 372 GLEALVRWNHPERGMISPGEFIPVAEQTGQIIDLTAWVMKEAIKDCKIW-EQAGFADFKI 430

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            INI++ +   ++L   +  L  +  ++  R++L  +ES +M + + +   L  L  +G+
Sbjct: 431 SINISALEFNHDDLASHVTDLFDEVDFNKHRVQLELTESAIMTDAQANIKKLSELCDLGV 490

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIA 915
           +L +DDFGT  S LSYL   P + +K + S + G  TE   AI+ +I  +AK +   ++A
Sbjct: 491 TLAVDDFGTGYSSLSYLRQFPINVLKIDRSFVMGIGTENGNAIVDAITSLAKALHLGLVA 550

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + +  +  +  L   GCD +Q  +++ P+   SI+ LL + F
Sbjct: 551 EGVETKEQMDYLVASGCDTLQGFYLSRPVPAKSIIGLLTKPF 592


>gi|71907617|ref|YP_285204.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71847238|gb|AAZ46734.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 695

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 227/437 (51%), Gaps = 7/437 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+E++++   +   A+ D LTG+ NR+ F++RL   L         +  V+ ID+D++K+
Sbjct: 256 ISERRQAQSKLNYLAYHDPLTGLANRRCFIERLEESLSEGERHGE-KLAVLYIDLDQFKQ 314

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD++LVS+  R+ E ++  D+LARL G+ F  ++ +  +  ++   A  + 
Sbjct: 315 VNDSLGHGVGDELLVSVAARLSEHVRLIDMLARLGGDEFICLMEAARSEDEVELLAREII 374

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +   P  L + E+ +TAS+G +   S   +  ++++NA+ AMY AK  G  +   +   
Sbjct: 375 AAFEYPFKLGDHELFLTASVGISLCPSDGNSVLDLMRNADTAMYRAKMLGRGNFHFYTAE 434

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ ++  L  A++N EL +   P +     ++VG EAL++W+ P+ G +    
Sbjct: 435 MTREAQERIQMENLLRRALDNGELSVHLQPQVDSRSGQLVGAEALVRWNSPELGQVMPIR 494

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  ++L    R  + WR      P  + +N++ K L   E  + +  
Sbjct: 495 FIPLAEDSGLIIGLGNWVLRETCRQFMQWRMSGFELP-QVSVNLSVKQLERPEFIDVLDK 553

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P+ +KL  +ESVVM   +     L RLR +GISL LDDFGT  S LSYL  +
Sbjct: 554 ILDETGMDPTLLKLELTESVVMAVGDAFTP-LERLRDLGISLALDDFGTGYSSLSYLKML 612

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G        AI+R+I+ +A+++   ++A+ +        L  +GC+ 
Sbjct: 613 PVQQLKIDRSFVEGIGRNSGDEAIIRTIMELARSLGFEVVAEGVETVEQANFLADLGCEQ 672

Query: 935 IQDSHVASPLGFNSILK 951
           +Q       +       
Sbjct: 673 LQGFLHGQAVSPVEFRA 689


>gi|71734101|ref|YP_275409.1| sensory box/GGDEF family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554654|gb|AAZ33865.1| sensory box/GGDEF family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 732

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/581 (22%), Positives = 231/581 (39%), Gaps = 17/581 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+     ++   +     +        R       S D +   D     ++       I
Sbjct: 146 LVLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494
            G  S    G   +    I    R      L          +            D     
Sbjct: 206 FGHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIP 263

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + +       G+      I  D+T++ ++ + +   A  D+LTG+ NR +   R+   
Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                 D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G
Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML
Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D
Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+     
Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE 556

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR
Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A    
Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + A+ I        +    CD  Q      P+  +   +
Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|146284167|ref|YP_001174320.1| sensory box protein [Pseudomonas stutzeri A1501]
 gi|145572372|gb|ABP81478.1| sensory box protein [Pseudomonas stutzeri A1501]
          Length = 890

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 151/582 (25%), Positives = 261/582 (44%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
              +    A    +Q   S      L   AV  S       D         P    I   
Sbjct: 315 AGELADQYAQVLANQQRLSATHMLGLFQRAVEQSASAFILVDRDGRVEYVNPAFTAISQF 374

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G     L  +   +         S + +     Q EFR R  + + +W  + I 
Sbjct: 375 SESEVRGQRLADLKAL--ENLGELLFDTSSVLAHSN-SWQGEFRSRRKNLEPYWGQLSIS 431

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + N +G +  YIGI  DIT  K + + I   A+ DNLT + NR  F+  +       A 
Sbjct: 432 KVFNDDGMLTHYIGIYEDITRSKLAHQHIERLAYTDNLTNLGNRPFFIRSIEERFAAGAE 491

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
               R  ++++DID +K+IND LG   GD +L SL RR+   L    +LAR + N F ++
Sbjct: 492 ---PRLCLLLVDIDNFKRINDSLGHQTGDKLLTSLARRLRNGLSQQSVLARFASNEFALL 548

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +     I   A  + + +  P+ + ++ I+V+ S+G A           ++K+A  A
Sbjct: 549 FDDKGLEEGI-RLADQVLRILDKPLFVDKQLISVSGSLGLACSPQHGRDPETLMKHAGQA 607

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           ++ AK  G N V+ F  +        +  + +L  A+  +EL + Y P + L    + GL
Sbjct: 608 LHKAKANGKNQVQIFTEALHAEANYKLFVENNLRRALLQNELEVFYQPKLCLHTGRLQGL 667

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G I   +F+ +AEE  +I  I  +++    R  ++  +     P  I I
Sbjct: 668 EALLRWNHPEKGMIRPDQFISVAEETGLIIPIGKWVVREACRMGVTLSELGLGKP-QIAI 726

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ K   D +L   + A++ +      +++L  +ES+++   E +R  L  L+ +G++L
Sbjct: 727 NLSPKQFSDPDLLSSIAAILLEEKLPAGQLELELTESLLLDATEETRQQLIGLKALGLTL 786

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL   P D +K + S +      +  + I  ++I MA+ +   ++A+
Sbjct: 787 AMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDNQDDVEITSAVIAMARKLHLKVVAE 846

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            I     +K L R  CD  Q      P+    +   L+ R+P
Sbjct: 847 GIETPEQLKFLRRHRCDIGQGYLFDKPIPGTGLTDALR-RYP 887


>gi|152992153|ref|YP_001357874.1| hypothetical protein SUN_0557 [Sulfurovum sp. NBC37-1]
 gi|151424014|dbj|BAF71517.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 656

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/435 (30%), Positives = 232/435 (53%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+  +     A+ D LT +PNR  F DRL   +D S  + N +  V+ +D+D +K+IN
Sbjct: 217 KLKQQKDAYKKLAYYDILTKLPNRVLFYDRLKHSIDKSKRN-NTKLAVLFLDLDNFKEIN 275

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD+VL  L  R+ + L+  D LARL G+ F ++L    +   I + + ++ + 
Sbjct: 276 DSLGHHVGDNVLKILATRLQKRLRKSDTLARLGGDEFTLLLEDLEDLSNIGEISQSLIQV 335

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ PI + E  + VT S+G + +      +  +LK A+ AMY AK+ G N    ++    
Sbjct: 336 ISKPIKIKEHTLYVTVSLGISIYPDDGQDTESLLKCADAAMYSAKNEGCNLFHFYKQEMT 395

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 I  +  +  A++N E  + Y P+I +   +++GLEAL++W H + G +S  +F+
Sbjct: 396 VKALERITFETSIRHALDNDEFIVYYQPLIDIRTNQLIGLEALLRWQHSEKGLLSPDKFI 455

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  I   +LE +A  +  W ++   P   I +N++ K L  + L   +  ++
Sbjct: 456 HIAETSSIIIQIGERVLEDVAAQLEIWHEKGFNPE-RIAVNLSVKQLRHHGLISIISDIL 514

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            KT + P  ++L  +ES  M  P ++  LL +++ +G+ LT+DDFGT  S LSYL  IP 
Sbjct: 515 EKTKFRPKWLELEITESYTMQKPVQAIRLLNQIKDLGVDLTIDDFGTGYSSLSYLKKIPV 574

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + + +      +   A++ +I+ MAK++   ++A+ +  E   + L  +GC  IQ
Sbjct: 575 NKLKIDRAFIKDITENKDDKALVSAILSMAKSMNLDVVAEGVETEEQRQCLEALGCYKIQ 634

Query: 937 DSHVASPLGFNSILK 951
               + P+  + I K
Sbjct: 635 GYLFSKPMSVSDIEK 649


>gi|150017708|ref|YP_001309962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
 gi|149904173|gb|ABR35006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Clostridium beijerinckii NCIMB 8052]
          Length = 792

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 149/770 (19%), Positives = 303/770 (39%), Gaps = 62/770 (8%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSK-LVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
            ++ I  F  A  V GY      +L   LV     E    R    +A   ++++F+   +
Sbjct: 48  ENINIAFFWRAVSVFGYCFFSGHWLYFALVLNNEKESKYNRIIIILAHVPAVLLFMLNII 107

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
                      I             +      + + I  +    ++     +   + ++ 
Sbjct: 108 ----VEPSSAMIRRPYGWIDVAPNLIGQIAYSICSIIFYVLGLVMLFNRGRYSKKNRIRK 163

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
             + +L      +       + + +   L    + P+ V    + +  + + + +H    
Sbjct: 164 QNKIILWTCFISITMGVLTDIILPMFGIL----VFPSAVLSGTIALGGVCYAISKHRFM- 218

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                 + +             + ++  D            + I       + G + + L
Sbjct: 219 ------LTTSKYLSEYIFNSVKNPIFILDENFAIQNCNEASSNITDYKFKELEGKMFSDL 272

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                 D        ++ +     R   E  ++  D ++    +    + +   D L  +
Sbjct: 273 ISYKNID-------FNTIIENSYVR-NVEVNLQQKDERYIVCELSSTVIYDEYDDKLGIV 324

Query: 514 GIANDITEQKK----------------------------SLEGILCNAFQDNLTGIPNRQ 545
            + +DI+E+K+                            + E I    + D LT IPNR+
Sbjct: 325 ILIHDISERKRIAEIEKKYTLKLERKNSKLVDQIKDKILAEEKIRHYVYYDALTEIPNRK 384

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             L+ +  +L     + + +  ++ ID+D +K IND  G  VGD VL  +   + + +  
Sbjct: 385 MMLENINELLK----NKDKKFAILFIDLDDFKNINDNFGHQVGDKVLKKVASTLKDSIGP 440

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            DI++R+ G+ F IIL +  + + I + A+ ++K +  PI   E  + + ASIG + +  
Sbjct: 441 QDIISRIGGDEFIIILKNVESDIYIKEIALRIQKELKKPITYNEESLILGASIGISIFQE 500

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723
               S  ++ NA+LAMY  K  GG     +  ++     D++ +K  L  A+ N+E  + 
Sbjct: 501 HGEDSDTLINNADLAMYEVKKNGGYDFAIYSPKMEHKAIDKLEMKMKLNKALSNNEFMVY 560

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+ L  ++++  EALI+W             + IA+ +  I  I+ +MLE       
Sbjct: 561 YQPIMDLKSKKVLNSEALIRWKQGDRIIPPIEF-IPIAKSVGEIIPIDNWMLENACIQCK 619

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W +  +     + +N +   L   E    +Q ++      P  + L  +E   M + E 
Sbjct: 620 KWNEIGSHE-FSVSVNTSYSQLKQPEFVSLVQNILDAYSLPPEYLNLEVTEDEAMEDFET 678

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901
              +L + + +GI ++LDDFGT  S L+Y+  +P D +K + SL+         + I++S
Sbjct: 679 IINILEQFKSMGIKISLDDFGTGYSSLNYVNKLPIDKIKIDKSLIMNLETNYKNLTIIKS 738

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           II M  +++  I+A+ I  +  ++ L  + CD+IQ   +  P+  +    
Sbjct: 739 IINMGHSLDIKIVAEGIETKEQLRILNELKCDFIQGYLIGKPMEASDFEH 788


>gi|317405519|gb|EFV85826.1| signaling protein [Achromobacter xylosoxidans C54]
          Length = 687

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/432 (29%), Positives = 216/432 (50%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E ++  A  D LT +PNR    DRL   ++ ++        V+  D+D +K +ND  
Sbjct: 255 EANEELVQLALHDTLTKLPNRILLEDRLEQAIESASRRKGY-FAVLFFDLDGFKAVNDAY 313

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ L +RI + L+  D +ARL G+ F I+L         A+ A  + ++IA 
Sbjct: 314 GHHTGDALLIDLAQRIRQTLRTQDTVARLGGDEF-IVLSEVVEPTDAANVADRLIEAIAR 372

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ +   E+ VT+S+G A + +    +  +L NA+ AMYHAK  GG     F  S     
Sbjct: 373 PVMVYGHEVLVTSSVGIAIYPNDGEDTHALLTNADAAMYHAKRLGGTGYSFFEPSMNADA 432

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I+   DL LA E  +  L Y P        I+G EAL++W+HP  G +   +F+  A
Sbjct: 433 HEQIELLHDLRLAQERDQFVLHYQPKYEAPAGPIMGAEALLRWNHPTRGLVGPDQFIPTA 492

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I +I  +++    R +  W +        I +NI++       L E ++A +++ 
Sbjct: 493 EKTGLILSIGEWVINEACRQMREWINA-GQGHWTIAVNISALQFAHASLVETVRAALARH 551

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS + L  +ES  M + E S  +L RL  +G+++++DDFGT  S L YL  +P   +
Sbjct: 552 DVPPSCLTLEVTESTAMRDAEASLTVLKRLSGLGVTISIDDFGTGYSSLLYLKRLPATEL 611

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +       +  AI+ +I+ +A+ +   I+A+ +      K LT +GCD +Q   
Sbjct: 612 KIDRGFVNQLENDNEDAAIVSAIVALAQQLNLRIVAEGVETAAQQKFLTGLGCDSLQGFL 671

Query: 940 VASPLGFNSILK 951
           +  P+  +  L+
Sbjct: 672 LGKPMPADEFLE 683


>gi|15620536|gb|AAL03920.1|U30252_8 unknown [Synechococcus elongatus PCC 7942]
          Length = 635

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/623 (20%), Positives = 263/623 (42%), Gaps = 58/623 (9%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--L 440
             ++     +         +        +      V   ++             IL    
Sbjct: 11  NSSIAVMSFSLNAVISQARNSQTYLRQILDHLPIGVAVHELTGRMTYVNAVGREILRGKY 70

Query: 441 ASGSMHGPIRNW------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            S ++    + +         +   +       L   + +       +  +R  D     
Sbjct: 71  KSATLEEMAKFFNIYQASKNRLTPIEELPLAMALQGQLSHTE-----DLELRWPDRT-IP 124

Query: 495 MIIRIRPMSNSNGDILRYIGIANDI----------------------------------- 519
           + +   P+ +  G I   + +  DI                                   
Sbjct: 125 LEVWGIPIHDETGHIKEGMTVFQDIHERLENARLIQQANEQLSLTVQELEAANHKLEQEA 184

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E++++   +   A  D LT +PNR  F+++L    +    D      V+ +D D++K +
Sbjct: 185 SERQQAQAQLWHLAHFDTLTQLPNRAYFVEQLHAWFNRYKADHQYPFAVLFLDCDRFKIV 244

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG + GD +L  + +R+   +  P I ARL G+ FG+++    +     D A  + +
Sbjct: 245 NDSLGHSAGDVLLTQVAQRLQSCIASPVIFARLGGDEFGVLVP-AQDPGYPQDLAEQLHE 303

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFR 696
            I  P  +  + I +  SIG +  ++    + E+L++A+ AMY AK      G  + S +
Sbjct: 304 LIVHPFEIQGQRIYIGVSIGISFVSAQIDAAEELLRSADTAMYAAKRNPLSRGIQIFSAK 363

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +S+     + ++  L  A++ +++ L Y PI+ L    +VG EAL +W HP+ GNI   E
Sbjct: 364 LSANSLKNLALETALREAIKQADIDLFYQPIVDLETGALVGAEALARWFHPELGNIPPLE 423

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP--IFILINIASKDLLDNELCEGM 814
           F+ +AE   +I ++  F+LE+    I  W+    + P    + +NI+++ +   +  + +
Sbjct: 424 FVTLAERSKLIFSLGNFILEKACLQIHLWQQDHLITPGDFILHVNISAQQICHEDFEDWI 483

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++ +T  S   + L  +ES V  + + +   LL  L+ +G+ L++DDFGT  S LSYL
Sbjct: 484 KDILQRTEISAQNLMLEITESSVAEDIDQQLLKLLDELKSMGVQLSIDDFGTGYSSLSYL 543

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P +++K + S +           + ++ I +A +    ++A+ I  E  +  L ++G
Sbjct: 544 QRLPVNSLKIDRSFIHQINLAGDNRQVAQATIALAHSFGLEVVAEGIEEESQLYWLRQLG 603

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD  Q  + + PL    + + L+
Sbjct: 604 CDMGQGYYFSKPLSAADMTEFLR 626


>gi|260460286|ref|ZP_05808538.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259033931|gb|EEW35190.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 427

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 170/425 (40%), Positives = 284/425 (66%), Gaps = 2/425 (0%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR+ F++RL  I+ ++ T++ +RPTV VIDID++K++ND LGI+ GD +L+++ RR
Sbjct: 2   TGLPNRELFMNRLEAIISIARTEEKVRPTVFVIDIDRFKQVNDGLGISAGDTILLTIARR 61

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  LLK  D L+R +G++F ++L+SE +  +IA  A A++ +I  PI   +REI +TASI
Sbjct: 62  LHRLLKPKDSLSRFAGDQFALMLLSEQDPARIAGVADAIKHAINNPITFAKREIVLTASI 121

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVE 716
           G  +WTS++ ++ +M+K+AELAM+ AK  GG+ +E FR +     +DR+  + DL  A+E
Sbjct: 122 GLITWTSAQTSAEDMVKDAELAMHQAKRFGGDRIEPFRPAFRTVGTDRLQFESDLRRAIE 181

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E  L Y PI+RL D  + G EAL++WDHP+ G I  ++F+ +AE   +I  + LF ++
Sbjct: 182 RREFTLAYQPIVRLEDGSVAGFEALLRWDHPRRGMIPPADFIPVAESCGLIVQLGLFAMQ 241

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           + A D+  W+ Q    P+ + +N++S+ L+  +L   ++++I++    P   +L  +ES+
Sbjct: 242 QAAEDLAGWQKQIGDAPLSVSVNLSSRQLIRRDLVSDVRSVIARANLKPRCFRLELTESL 301

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           VM NPE++  +L +L+++GI L+LDDFGT  S L+YL   PFDT+K + S +  ST KR 
Sbjct: 302 VMDNPEQTAHVLTKLKQLGIGLSLDDFGTGYSSLAYLTRFPFDTIKIDKSFVDDSTPKRA 361

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +L+S++ MA  +  +++A+ I  E D  EL +MGC+Y+Q     +P+  + +LK LKE+
Sbjct: 362 VLLKSMVNMAHELGLSVVAEGISDERDALELRQMGCEYVQSFMFGAPMPGDQVLKTLKEQ 421

Query: 957 FPLVK 961
           +PL +
Sbjct: 422 YPLTQ 426


>gi|320324625|gb|EFW80702.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 586

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 137 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 195

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 196 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 254

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 255 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 314

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 315 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 374

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 375 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 433

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 434 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 493

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 494 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 553

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 554 LGYPLPAEQFLDEIRA 569


>gi|229131482|ref|ZP_04260375.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
 gi|228651982|gb|EEL07926.1| Sensory box/GGDEF [Bacillus cereus BDRD-ST196]
          Length = 689

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 120/574 (20%), Positives = 243/574 (42%), Gaps = 16/574 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
               + + + A       I          +  + D +   D +       P    I G  
Sbjct: 124 FIICITRDITAQVKKKVEIEEKQMLFKSLLEYNNDSIISVDSIGRITYANPATYEIFGYR 183

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +         +I+      F+ I  + +  R  ++  + +    +    ++ +R  P
Sbjct: 184 YEELKDQFI--FQFINKEYEKTFQIIFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIP 240

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   N +I+    +  D+T Q  +       A+ D LTG+ NR S  ++L   L  +   
Sbjct: 241 II-VNSEIVGVYIVTRDVTRQVLNEMKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE- 298

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ID+D++  IND  G   GD VL  +T  + +L      L R   ++F +++
Sbjct: 299 ----FALVFIDLDEFHLINDTFGHKEGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLI 354

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +      + + A  + K I+    + E ++ ++ASIG        +    + +  + A+
Sbjct: 355 ENIT-REYVEEVAQTILKKISGHFVIEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAAL 413

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             AK +G  +   +       R  R +I+  L  A+E +E  L Y P I +   ++  +E
Sbjct: 414 EKAKEKGKGYYHFYCSGLDCEREQRFIIENQLHRAIEKNEFSLYYQPQINIETGKMTSME 473

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W++ + G +S ++F+ +AE       ++ +++ ++   I  W ++     + I +N
Sbjct: 474 ALIRWENKELGFVSPNQFIPLAERTGFTIKLDEWVVHQVCEQIREWLNKGYEV-VPIAVN 532

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I+++      L E +   ++K    P  + +  +E  ++ + + S+ +L +L++  + + 
Sbjct: 533 ISARHFRSITLIEMITRALNKYNVPPHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIH 591

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II +A  +   +IA+ 
Sbjct: 592 LDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIYKDERDTNITAAIIHLAHTLGLNVIAEG 651

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +     I+ L       +Q      PL    +  
Sbjct: 652 VEKAEQIQFLKEKNVKIVQGYFYNRPLSIYDVEN 685


>gi|167031381|ref|YP_001666612.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166857869|gb|ABY96276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudomonas putida GB-1]
          Length = 896

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 148/581 (25%), Positives = 264/581 (45%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S       +         P    I   ++  + G     LP +
Sbjct: 335 RRAATNALHLFQRAVEQSASAFLLVNRDGRVEYVNPSFTAITQYSTDEVQGRQLAELPAL 394

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 395 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 449

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+T+ K + + I   A+ DNLT + NR +F+  L       A D      ++++DID
Sbjct: 450 IYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDE---RFARDGESAMCLLLVDID 506

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L    ILAR + N F ++L +  +       A
Sbjct: 507 NFKRINDSLGHQTGDKLLISLARRLRNSLHAGGILARFASNEFAVLLDN-TSLEDGQGVA 565

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           + + +++  P+ +  + I VTAS+G A      +  + ++KNA LA++ AK  G + V+ 
Sbjct: 566 LQLLRTLDKPMFVDNQLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGKHQVQV 625

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P I L    ++GLEAL++W+HP+ G I
Sbjct: 626 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKICLRSGRLLGLEALLRWNHPERGMI 685

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +  R +     +A M  + + IN++ K   D +L  
Sbjct: 686 RPDQFISVAEETGLIIPIGKWVVRQACR-MSQQLREAGMGNLHVAINLSPKQFSDPDLVA 744

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNP-------------ERSRLLLGRLRKIGISLT 859
            +  ++               E++                  E +   L  L+ +G++L 
Sbjct: 745 SISTILKD-------------EALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLA 791

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  +++ MA N++  ++A+ 
Sbjct: 792 MDDFGTGYSSLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 851

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+    + + LK R+P
Sbjct: 852 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAERLK-RYP 891


>gi|56475847|ref|YP_157436.1| response regulator receiver protein [Aromatoleum aromaticum EbN1]
 gi|56311890|emb|CAI06535.1| Response regulator receiver protein [Aromatoleum aromaticum EbN1]
          Length = 638

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 129/443 (29%), Positives = 236/443 (53%), Gaps = 7/443 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  ++ E++ + +     A +D LTG  NR+S  DRL   + ++    N R  ++ +D+
Sbjct: 166 ALQTEVAERRGAEKLARELALRDTLTGFFNRRSLNDRLARAISVAG-HQNDRLALLFLDL 224

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K++ND LG   GD++L  +  R+   ++  D LAR  G+ F ++L + ++    A  
Sbjct: 225 DRFKRVNDSLGHDKGDELLKQVAARLRCAVREADTLARFGGDEFVVLLENLHDRDDAAQV 284

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           AI +  ++A P  L    + V+AS+G + +     ++S ++KNA+LAMY AK  G N  E
Sbjct: 285 AIKICAALAQPFELGASTVKVSASVGVSLYPDDGASASVLMKNADLAMYEAKQMGRNGHE 344

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +R    R   +R+  + +L  A+EN E  L Y P + +++  I G+EAL++W HP+ G 
Sbjct: 345 FYREELNRRLLERIRHEHELQQALENDEFELYYQPKVNVVEGTIAGMEALLRWHHPQLGF 404

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNEL 810
           +S+ +FM +AEE  M+  +  + L    R    W+D       + I +N+A   L    L
Sbjct: 405 LSAEQFMGLAEEAGMLVPLGEWALRAACRQARQWQDAGWLEETVRIAVNVAEPQLYSA-L 463

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  L+ +   SP+ I+L  +E+++M + + +  +L ++   G+S+ +DDFGT  S L
Sbjct: 464 PDTLARLLDEHGLSPAHIELEITETLLMRDVDHAASVLAQIGATGVSIAVDDFGTGYSSL 523

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L  +P   +K + S +      R   AI+ +I+ MA  +   +IA+ +  E  +  L 
Sbjct: 524 AILKALPIHILKIDQSFVRDLPHDRDTHAIVTAIVQMAHALGLNVIAEGVENEAQLGALR 583

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
           R+GCD  Q    + P+  + + K
Sbjct: 584 RLGCDEYQGYLYSKPIPASELAK 606


>gi|89094570|ref|ZP_01167508.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89081169|gb|EAR60403.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 888

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/477 (25%), Positives = 232/477 (48%), Gaps = 9/477 (1%)

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R    D +  W    I  ++N +  I  Y+ +  DI+ +K++   +   A  D LTG+PN
Sbjct: 402 RKTDFDGK--WYSFSISHITNPSDQITHYVTVVQDISARKQAEAKLYKQANFDPLTGLPN 459

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+   + LT  L  +      +  V+ +DID +K +ND  G  VGD +L  ++ R+ +  
Sbjct: 460 RRRAHENLTAELQSAWKHKQ-QVAVLYLDIDNFKNVNDTFGHMVGDQLLQLVSARLVKCC 518

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           K    +  +SG+ F ++     +   I   A  +   +  P+ +  ++I V+ SIG + +
Sbjct: 519 KDLANICHISGDEF-LVYARYASESDIRKLAQKILDDVQTPVLIEGKQIFVSVSIGISRY 577

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELY 721
                  + ++K A++A+Y +K  G N    F     R  +    I+ +L  A+E +E+Y
Sbjct: 578 PEDNNDVTGLVKFADIALYESKREGRNRYSFFDHELDRRLKRKHTIETELRQALERNEIY 637

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y     +   +I+G EAL++W+    G +   EF+ +AE++ +I  +  F L +   D
Sbjct: 638 MAYQSKNDIASGKIIGFEALMRWNSGVLGPVGPFEFIEVAEDIGVINELGEFALRQACID 697

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  ++   +   + + +N++ + L D+ + + +   I +T   PSR++L  +ES++  N 
Sbjct: 698 LQEFQK-FSDTTLKMAVNLSIRQLNDDSIVDMVAKGIEETGIDPSRLELEITESLLAENI 756

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
           ++    L RL ++G +LT+DDFGT  S LSYL   P  T+K + + +      E    + 
Sbjct: 757 DQILPRLERLLELGTALTIDDFGTGYSSLSYLTTFPVSTLKVDRAFVKDMVSNEGDATLT 816

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +II MA  +   ++A+ I  E  +  L    CD  Q    + PL    +  L++  
Sbjct: 817 HTIITMAHALGMKVVAEGIEDEDQLAMLREQNCDIGQGYLFSKPLTQKEMEILIETH 873


>gi|104784060|ref|YP_610558.1| sensory box protein [Pseudomonas entomophila L48]
 gi|95113047|emb|CAK17775.1| putative sensory box protein [Pseudomonas entomophila L48]
          Length = 897

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 148/581 (25%), Positives = 262/581 (45%), Gaps = 43/581 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S       AV  S       +         P    I   ++  + G     LP +
Sbjct: 336 RRTAASALHLFQRAVEQSASAFLLVNRDGVVEYVNPSFTAITQYSTEEVQGHHLGELPAL 395

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                +N   +L             Q EF+ R  + + +W  + I  +   N ++  YIG
Sbjct: 396 -----ENLSELLFDSPSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIG 450

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+T+ K + + I   A+ DNLT + NR +F+  L       A D N    ++++DID
Sbjct: 451 IYEDVTQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDSNTPICLLLVDID 507

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD +L+SL RR+   L     LAR + N F ++L  + +       A
Sbjct: 508 NFKRINDSLGHQTGDKLLISLARRLRNSLSSGGSLARFASNEFAVLL-DDTSLEDGQGVA 566

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + +++  P+ +  + I VTAS+G A         + ++KNA LA++ AK  G + V+ 
Sbjct: 567 QQLLRTLDKPMFVDNQLINVTASVGLACAPLHGSDPATLMKNAGLALHKAKANGKHQVQV 626

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++  S ++ ++ +L  A+  +EL + Y P + L    ++GLEAL++W+HP+ G I
Sbjct: 627 FTEVLNAEASYKLFVENNLRRALTQNELEVFYQPKLCLRSGRLLGLEALLRWNHPERGMI 686

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ +AEE  +I  I  +++ +  R        A M  + + IN++ K   D EL  
Sbjct: 687 RPDQFISVAEETGLIIPIGKWVVRQACRK-SQELRGAGMGNLHVAINLSPKQFSDPELVG 745

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGN-------------PERSRLLLGRLRKIGISLT 859
            + +++ +             E++                  E +   L  L+ +G++L 
Sbjct: 746 SIGSILKE-------------EALPPHLLELELTEGLLLEATEDTHRQLDELKALGLTLA 792

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL   P D +K + S +      +  + I  +++ MA N++  ++A+ 
Sbjct: 793 MDDFGTGYSSLSYLKKFPIDIIKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEG 852

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           I     +  L R  CD  Q      P+    + + L+ R+P
Sbjct: 853 IETPEQLAFLRRHRCDVGQGYLFDRPIPGRELAEKLR-RYP 892


>gi|162149427|ref|YP_001603888.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161788004|emb|CAP57608.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 692

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 143/551 (25%), Positives = 259/551 (47%), Gaps = 21/551 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRDNF 464
             +A+      +  +      +      A I GL  G+       R  L  ++   R   
Sbjct: 130 LDIALQNMSHGLCLFGADARLILANGRYAEIFGLPEGAAKPGMTYRALLTLVY-TRRGLS 188

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN----SNGDILRYIGIANDIT 520
              +   V     R     R R            +         ++G    ++    DIT
Sbjct: 189 AEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADG---GWVATYEDIT 245

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++   I   A  D+LTG+ NR  F + L   L L+A     R  V+ ID+DK+K+IN
Sbjct: 246 ERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAA-SGTQRVAVIGIDLDKFKEIN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD VLV+L  RI ++L+  +++ARL G+ F       ++  ++  F   + + 
Sbjct: 305 DQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAA-KRFDDMAELNAFIGRLEEC 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ PI +   E+   ASIG + +     T   ++ +A+LAMY AK     HV  +     
Sbjct: 364 LSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREHVCFYEAEMD 423

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR  +   L  AV++ + +L +    R+   EI G E L++W HP+ G ++  +F+
Sbjct: 424 EAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPMDFI 483

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I  I  ++L +  R+   W       P  I +N+++  L ++ L + ++A++
Sbjct: 484 PLAEECGAILPIGEWVLRQACREAARWSR-----PYRIAVNLSAVQLGEDGLADMVRAIL 538

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T  +PSR++L  +E+ ++ + ++S   L R++ +G+S+++DDFG   S L  L   PF
Sbjct: 539 EETGLAPSRLELEITETAIIVDKQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPF 598

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S MT    + +  AILR+I+ + +++   ++A+ +  ++ +  L   GC   Q
Sbjct: 599 DKIKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGVETQVQLDILHAEGCIEAQ 658

Query: 937 DSHVASPLGFN 947
              +  P    
Sbjct: 659 GYLLGRPKPME 669



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 4/127 (3%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V  + D  V+  D      T       + G ++  + G +   L Y     RD   
Sbjct: 3   FRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRL-YSEAERRDGVP 61

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L      R G +  E      D    W  + I P+ +  G  + +     D T++K  
Sbjct: 62  QRL--LAEAREGTVAREGWRYRKDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTD 119

Query: 526 LEGILCN 532
            + I   
Sbjct: 120 ADRIAQM 126


>gi|219670546|ref|YP_002460981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfitobacterium hafniense DCB-2]
 gi|219540806|gb|ACL22545.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfitobacterium hafniense DCB-2]
          Length = 596

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 126/565 (22%), Positives = 249/565 (44%), Gaps = 15/565 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +   R  + V  S D+    +        +P +  ILG       G        +  
Sbjct: 27  ALKNLQRRFQVLVQDSHDVFEIINSDGTIQYISPAVEKILGYKPEERIGKPAY--ELLEP 84

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS---NGDILRYIGI 515
            ++  F+ +L     +    +Q E +++    Q   +   +R   +     G IL +   
Sbjct: 85  TEKYKFKQMLTLAFNHPDQVVQEEIKIKTKAGQEIILSCDMRNKLSEPSIQGVILNWRVS 144

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           ++D   + +        A  D LT +P R +F   L+  +  +         ++++DID+
Sbjct: 145 SSD---RNREDSQAKAPATLDELTRLPARGAFESLLSQHMAEAR--GEEALALIIVDIDR 199

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IN  LG   GD +L  ++RR+  L     +L R SG+++ I+               
Sbjct: 200 FKYINSYLGYEHGDQLLRQISRRLRLLCTDQVLLCRFSGDQYAIVAARGEGQDDYLPLVE 259

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + +    P  + E ++ ++ S+G + +      S  ++K+A  A+   K  G  H + +
Sbjct: 260 EVLRLFDAPFIVDEHKLDISVSLGISLYPHDAQDSETLVKSAYAALLRGKAAGKKHYQFY 319

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                  +     ++ D+  A++  +  + Y PI+ L   E++ +EAL++W HP  G IS
Sbjct: 320 SADVEHKNYREFLLRRDMQKALKEGQFAVHYQPIVNLYTNEVLAVEALLRWKHPLCGMIS 379

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ I EE   I  +  ++LE + R    W+ +   PP+ + IN +S    +    E 
Sbjct: 380 PAEFIPIMEETGFIVDMGKWLLEEVCRSHKQWQKEGL-PPLKVSINCSSVQFAEECFVES 438

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +QA++ K    P  + +  +ESV++ N ++    L +L++IGI + +DDFGT  S LSYL
Sbjct: 439 IQAILDKMQLDPRYLIIEITESVLIDNAKKVIADLQKLQEIGILVAVDDFGTGFSSLSYL 498

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K + S +      + +  I  S+I +A+ +   ++A+ I     +  L R  
Sbjct: 499 LTFNIDIIKIDSSFIQNIPTNKTSTIITHSVINLARELNIKLVAEGIESPEQLSHLKRFN 558

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C   Q    + P+  + + +++  +
Sbjct: 559 CHTGQGYLYSKPIPQHQLAEIIANK 583


>gi|325122893|gb|ADY82416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 950

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/575 (22%), Positives = 261/575 (45%), Gaps = 11/575 (1%)

Query: 388 QHVLATGYFSQGIFSDG---ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           Q  L     ++ I  +    E   L    +  + + ++  D   + +   P    + G +
Sbjct: 373 QKALRMVGMTRDIHQEKKDQEHLRLSAIVLEQAAEGIFILDEHLNYIDVNPYYEKLTGFS 432

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       +       +  F T +   +    G    +F  + +  +  ++ + I  
Sbjct: 433 KPELLSKQLFSITINQKELQQQFHTSITQQLLE-TGEYMGQFDEKFSSGKSVYLWLHINV 491

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +    I  YIG A D+TEQK+  + +      D+LT +PNR  + ++L   L   + +
Sbjct: 492 VKDEFNQITNYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRLYYYNQLHQYLVNPSYN 551

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ++ID+++  N+ L    GD++L    +R+  +     ++A L+ + F II 
Sbjct: 552 IK-NLALIRVNIDRFRAFNEFLNNDSGDELLKQFAQRLRLININAILVAYLNSDDFAIIY 610

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   +  +   + +++  P  +   E  +TASIG A +         +  +AE A+
Sbjct: 611 EISPIHPNVEQYCQNILQALNAPFYIDNHEYFITASIGVACFPEHGRQIDHLNNHAEQAL 670

Query: 682 YHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             AK  GGN +  +    +       ++++L  A++N E  + Y P I L D+  +G EA
Sbjct: 671 SEAKRLGGNTICYYCNKTNHSYKTADLEQELRKAIQNDEFVIYYQPKINLHDQSTIGFEA 730

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G I  + F+  AE   +I  I   +L+++ + +  W++      I + +NI
Sbjct: 731 LIRWQHPEKGLILPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKNA-GYINIQVSVNI 789

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++ +    L   +  ++ K     S ++L  +ES ++ N    + LL  +++  IS+ L
Sbjct: 790 VAQQIHRGLLLNDLDEVLQKYNIQGSDLELEITESALLDNTANVKTLLHAIKQRDISIAL 849

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DDFGT  S L+YL   P D +K + + ++     K+ AI+ ++I M K++   ++A+ + 
Sbjct: 850 DDFGTGYSSLAYLTEYPIDVLKIDRAFISKIGDHKQEAIVNAMIAMGKSMGLKLVAEGVE 909

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +  L +  CD++Q    + P+    I+  L+
Sbjct: 910 TKEQVTYLQKQQCDFLQGYFFSRPIPAEQIIPYLQ 944



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 105/378 (27%), Gaps = 50/378 (13%)

Query: 181 YKDTVNSFTLYRGIIIGVASLLAI-------FLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
           +  T+  F+   G+ I     L         + TI +      +L             I 
Sbjct: 47  FSSTITIFSWSIGLTIVALVCLLFIPNILTHYRTIDFTKKADRVLQSICLF---SGILIG 103

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
           I+   +   +      L        + ++S+ II L       R+        +      
Sbjct: 104 INVTIIHFYLPPDLIALPDAHILIALFITSAHIIGLTFLTQQPRYF-------YLLFIPS 156

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
            +   ++ +       +      ++    T    Y   + Y++   L+            
Sbjct: 157 TVPLLIAQFTHNPITQLPFYFAYNLTFVATVLCAYATQRNYQKISQLLL----------K 206

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-------ER 406
               +     +      L   L   V        Q         Q +           E+
Sbjct: 207 NKQLVQISDQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERTYDLTKMNEQ 266

Query: 407 Q-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIH 457
                   + A   +G   WDWDI   R+       T       +      +   L  IH
Sbjct: 267 LESHHYNLAFAHETAGIRPWDWDIESQRLEI-----TFFDQQKQTQTAVIHLNTILDRIH 321

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGI 515
            +D+  F   L   +          FR+   D  + W+    R ++        LR +G+
Sbjct: 322 PSDKKLFDERLKQHLEGVTDHFNITFRILRRDGSWRWIHDVGRVITRDPKTQKALRMVGM 381

Query: 516 ANDITEQKKSLEGILCNA 533
             DI ++KK  E +  +A
Sbjct: 382 TRDIHQEKKDQEHLRLSA 399


>gi|22299542|ref|NP_682789.1| hypothetical protein tlr1999 [Thermosynechococcus elongatus BP-1]
 gi|22295725|dbj|BAC09551.1| tlr1999 [Thermosynechococcus elongatus BP-1]
          Length = 790

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 224/447 (50%), Gaps = 8/447 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I E+K+    +L  A  D+LT +PNR  F D++   L+ +A   +    V+ +D+D++
Sbjct: 343 REIQERKEVEAQLLYQARHDHLTHLPNRWLFEDQVRLSLNHAAAHSDFHYAVLCLDLDRF 402

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND LG A+GD +L +  +R+   +   D++ARL  + F ++L       +    A  
Sbjct: 403 KTLNDSLGHAIGDLLLQAFAKRLTRCVSPQDVVARLGSDEFAVLLNDIQGIEQAQAIAQR 462

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVES 694
           +R+ +  P  +    +  T SIG     +   ++ E+L++A++AMY+AK +G     +  
Sbjct: 463 LRERLNHPFEIDHYTLYTTVSIGLVMGDAHYKSTEELLRDADMAMYYAKSKGHNRIDIFD 522

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +     DR+ ++ +L  A++  +  L Y PII L  +   G EAL++W       IS 
Sbjct: 523 PMMLQQVRDRLHLEVELRQAIDQGDFALYYQPIINLRSQSPRGFEALVRWQKED-TLISP 581

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM---PPIFILINIASKDLLDNELC 811
           + F+ +AEE  +I  ++ ++L      +  W+ +          + IN+++       L 
Sbjct: 582 TVFIPVAEETGLIFELSRWVLRSACEQLQQWQKRYPKLRSLGFTVSINLSANQFSLPTLV 641

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  +     +   +K+  +ES +M + + +  +L +L+ +G+ + +DDFGT  S LS
Sbjct: 642 AEIEQALEHHHLAGQFLKIEITESTLMHHLDSACEILTKLKAMGVRINIDDFGTGYSSLS 701

Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S ++     ++ + ++R+I+ +A+N+    IA+ I     ++ L  
Sbjct: 702 YLRNLPLDGIKIDRSFISQMDRSQEDLELVRTILVLARNLHLDCIAEGIESTTQLQLLRS 761

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           + C + Q    A PL  +     L++ 
Sbjct: 762 LRCPFGQGYLFAPPLTADKAEVYLQKH 788


>gi|289623524|ref|ZP_06456478.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649807|ref|ZP_06481150.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867719|gb|EGH02428.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 732

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/581 (22%), Positives = 231/581 (39%), Gaps = 17/581 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+     ++   +     +        R       S D +   D     ++       I
Sbjct: 146 LVLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494
            G  S    G   +    I    R      L          +            D     
Sbjct: 206 FGHRSEDALGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIP 263

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + +       G+      I  D+T++ ++ + +   A  D+LTG+ NR +   R+   
Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                 D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G
Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML
Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D
Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+     
Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE 556

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR
Sbjct: 557 -FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A    
Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + A+ I        +    CD  Q      P+  +   +
Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|117925246|ref|YP_865863.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117609002|gb|ABK44457.1| ammonium transporter / diguanylate cyclase/phosphodiesterase
            [Magnetococcus sp. MC-1]
          Length = 1264

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 242/565 (42%), Gaps = 18/565 (3%)

Query: 401  FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                E   LA      + + V  ++              + G  +  + G     L   H
Sbjct: 683  RRSEEALRLAATVYESTNESVVIFNGEGRVEQVNQAFCRLSGYTAREVRG-----LELRH 737

Query: 458  INDRDNFRTILDSFVGYR--RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +      ++  D         G    E   +          + +  +   +G     I +
Sbjct: 738  LLSARYEKSQFDEMAQALALTGHWSGEVMGQRKQGALASERLSLSLVRRPDGSTQNTIAV 797

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              D+TEQK   E I   A  D LT +PNR+ F DRL   L  +      R  +  +D+D+
Sbjct: 798  FTDLTEQKAQEELIWRQANFDPLTSLPNRRLFQDRLHQALAQADRSAG-RVALFFLDLDR 856

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K IND +G   GD++L     RI   ++  D +ARL G+ F +IL +  N   ++  A 
Sbjct: 857  FKPINDTMGHQAGDELLQKCAERINAAVRSSDTVARLGGDEFTVILPNIQNGQDLSRIAE 916

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             + K++  P  L   E  ++ S+G A +         +++ A+ A+Y AK  G N+V+ F
Sbjct: 917  GIIKTLTEPFYLKAGEANISTSVGVAVYPDDSQDDEGLMRAADAALYQAKDHGRNNVQFF 976

Query: 696  RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +    +R+ +++ L   +   EL+LVY P + +    + G EAL++W  P    + 
Sbjct: 977  TESLNQQILERIALEKGLRRGLGAGELFLVYQPQVEVSSGRLSGAEALVRWRLPTGEVVM 1036

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELC 811
               F+ +AEE  +I  +   ++    + I +W D    PP  I IN + K        L 
Sbjct: 1037 PDRFIPMAEESGLIVQVGEVVVSLAVQQIRAWLDAGFEPP-RISINASPKQFHLDGGGLT 1095

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              + +       SPSR+ +   ES +M NPERS  +L  L K+G+ + LDDFGT  S L+
Sbjct: 1096 SILMSTCDAYQISPSRLAVEIVESGLMANPERSGEILAGLAKLGVEVELDDFGTGYSSLA 1155

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
             L  +    +K +   + G     +   ++ +++ MA+ +   +IA+ +     +  L  
Sbjct: 1156 RLSRLQIQALKLDRRFLVGIPEDPQNRILVTAMVQMARGMGIEVIAEGVEDLRQMGFLQD 1215

Query: 930  MGCDYIQDSHVASPLGFNSILKLLK 954
            +GC   Q   +A P+   + +   +
Sbjct: 1216 LGCHRAQGFGIARPMEPEAFVVFCQ 1240



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 3/154 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +     + + A       I +   R       +   +   D  +  V   P +  +L L+
Sbjct: 543 MLIGTFRDIRARKQAELAIKASEARFRTLFASAALGMALIDAKQRVVDANPALMQMLELS 602

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIR 500
                 P    L   H  D+      LD+ +  R  +   E R          W  + I 
Sbjct: 603 HHRDALPPLAQLA--HPQDQQEVAARLDAVIEGRSPQENCEVRCLCEARHLTIWTRMVIS 660

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           P+   +      + I  D+T++++S E +   A 
Sbjct: 661 PIVLESNLTPMVVVIVEDVTQRRRSEEALRLAAT 694



 Score = 38.8 bits (89), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 18/121 (14%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
                 +GD +   D    ++T   P    + G +S +     + + +  +       F 
Sbjct: 454 RAVFQTAGDAILIIDPHSGQITAHNPMAEAVFGRSSAAFAHLTLSDLVVGVTPQ---RFW 510

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L                 R  D     + + I   S+ +G++L  IG   DI  +K++
Sbjct: 511 LGLHEEGEG-----------RLPDGHTFPLELAITRASHGDGEML--IGTFRDIRARKQA 557

Query: 526 L 526
            
Sbjct: 558 E 558


>gi|298487686|ref|ZP_07005727.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157778|gb|EFH98857.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 732

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/581 (21%), Positives = 231/581 (39%), Gaps = 17/581 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+     ++   +     +        R       S D +   D     ++       I
Sbjct: 146 LVLKDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELI 205

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHW 494
            G  S    G   +    I    R      L          +            D     
Sbjct: 206 FGHRSEDALGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIP 263

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + +       G+      I  D+T++ ++ + +   A  D+LTG+ NR +   R+   
Sbjct: 264 IELSLS-QWTYAGEPQFG-AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEA 321

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                 D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G
Sbjct: 322 C-----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGG 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML
Sbjct: 377 DEFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQML 436

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D
Sbjct: 437 GNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLAD 496

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G EALI+W+HP  G +S + F+   E   +   +  ++L         W++     
Sbjct: 497 GRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWQNTGCDE 556

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR
Sbjct: 557 -FRIGVNLFATQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLR 615

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
            +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A    
Sbjct: 616 SLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFN 675

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + A+ I        +    CD  Q      P+  +   +
Sbjct: 676 LQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|71282285|ref|YP_271060.1| GAF domain/GGDEF domain/EAL domain-containing protein [Colwellia
           psychrerythraea 34H]
 gi|71148025|gb|AAZ28498.1| GAF domain/GGDEF domain/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 831

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 234/452 (51%), Gaps = 4/452 (0%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR + + ++IT +K++ + +   A  D+LTG+PNR  FLD L   +  +   D+    V+
Sbjct: 374 LRTLALEDEITHRKQAEKLLKHTAAHDSLTGLPNRMVFLDLLNHAIACAKRKDDFSFAVL 433

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D++K +ND LG   GD +L  + R +  +++  D +ARL G+ F I++    ++ +
Sbjct: 434 FLDLDRFKVVNDSLGHHAGDVLLKIIARELLAIVRKVDTVARLGGDEFVILIEDLKSNNE 493

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             + A  +   +  P  +  + +    SIG +        +  ML++A+ AMYHAK  G 
Sbjct: 494 AFEVAQRITAFLQQPFTIDNQLVYTGTSIGISFSNIRYTDADTMLRDADTAMYHAKDNGR 553

Query: 690 NHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              E F  S  +   + + ++ D+  A+   E    + PII+L ++++ G EAL +W   
Sbjct: 554 GRYEVFDDSMHQKVQNALSLEADIREAITWQEFIPYFQPIIKLDNQKLKGFEALARWQST 613

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G +  ++F+ +AEE  +IK I++ ++E+  + +  W D+     +++  N+ SK    
Sbjct: 614 KRGFVYPNDFIPLAEETDLIKEIDIQIIEKSCQQLKCWHDELGCDDLYVSCNLFSKQFFS 673

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L + ++ ++ +T  +P  +++  +E  ++ N E     +  L+ +G+ + LDDFGT  
Sbjct: 674 TSLPQDIEKVLKRTGLAPHHLRVELTERALLENAEIVLTNMQALKNMGVKILLDDFGTGY 733

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L YL   P D +K + S ++   E     AI+R+I+ +A N++ + + + I    D +
Sbjct: 734 SSLGYLHRFPIDVLKIDRSFISNVDEHNNNRAIIRTIVDLANNLQMSTVGEGIESLADAE 793

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            L +M C Y Q  + A P+        + ++ 
Sbjct: 794 LLQQMDCVYGQGYYFAKPMSSQDTKDYIIQKL 825


>gi|332715584|ref|YP_004443050.1| diguanylate cyclasediguanylate cyclase/phosphodiesterase
           [Agrobacterium sp. H13-3]
 gi|325062269|gb|ADY65959.1| diguanylate cyclasediguanylate cyclase/phosphodiesterase
           [Agrobacterium sp. H13-3]
          Length = 779

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 152/782 (19%), Positives = 301/782 (38%), Gaps = 53/782 (6%)

Query: 191 YRGIIIGVASLLAIFLTIFYM----VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP 246
               +I +  + A F  +         R    +   A A  +  + +     L+   ++P
Sbjct: 18  LLAAVICLLGMHAFFHLLLRAEESPAGRKPYWVLVAAFAAGLSVWATHFVAMLAYKGSVP 77

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
            G    + A S +       + L       R  A    +    +  +++          +
Sbjct: 78  IGFDFQFTALSAVLAVLGFWLALRA-----RSQASYSPVIVGTLVTLSVAVMHFVGMAGM 132

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI--WFIGLWMAITKRLDN 364
             +          +   + + +          L   AW  I I      L +        
Sbjct: 133 DVAATISYRW-GPVLGGFAVAWVFFLLAFFLFLCSAAWKRIVIPAGCSILAICALHFTAM 191

Query: 365 DIIQPALVGGLV-----LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                +    +       +  +I    +  V      +    +  +R  + + G  D   
Sbjct: 192 SATILSPDPSVAGPDPDNLARVIMIAAVSGVTFLVLAATATAALVDRYLVDLKGLVDATL 251

Query: 420 D---WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH--INDRDNFRTILDSFVG 473
           D          V      A ++G    S+ G    +    +             +++   
Sbjct: 252 DGLAVVRDGRIVELNTRFAGLVGSDEASLMGKNPDDLFKAMDGQPTYLPRL-APVEAIRE 310

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                  +E  VR        +  R  P           +    D+TE++++   I   A
Sbjct: 311 RTDRPQVFELAVRT-------IEYRGHPCE---------VLAIRDLTEKREAQREIEYLA 354

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+ NR  F  RL   ++    +D     ++ +D+D++K +ND+ G A GD VL 
Sbjct: 355 RHDVLTGLSNRTMFQTRLHQQIEHCDAED--EFALLALDLDRFKAVNDIFGHAEGDRVLK 412

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + E  +  DI+ARL G+ F I+      S +    A  +     + +N       
Sbjct: 413 KVATILDECARPGDIVARLGGDEFVILTARHTKSEEARLLAETILAMFGLKMNAANDPTA 472

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDL 711
           V  SIG A +     ++  +L  A+LA+Y AK  G   +  +   +     +R  ++ DL
Sbjct: 473 VGVSIGIAVFPRDGNSNESILHAADLALYRAKMGGRGILSFYDPLMDQEARERRQLETDL 532

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            LA+  +EL L Y P++ +   ++VG EAL++W HP  G +    F+ IAEE  +I ++ 
Sbjct: 533 RLAINRNELVLNYQPVLSVECGQVVGYEALVRWQHPTRGVVPPDVFIPIAEESGIIISLG 592

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L    R   +W      P + I +N++        L   +  ++ ++  SP+R++L 
Sbjct: 593 EWVLREACRQASTWA-----PHLKIAVNVSPLQFSLANLGHVVCTVLMQSGLSPNRLELE 647

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+ ++ + + + ++L +L+ +G+++ +DDFGT  S LS L   PFD +K + S +   
Sbjct: 648 ITEAALLKDRKATLIILNQLKALGVAIVMDDFGTGYSSLSNLQSFPFDKIKIDRSFIAAM 707

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP--LGFN 947
           +E     AI+R++I + ++++  + A+ I  +   + +   GC   Q      P      
Sbjct: 708 SEDDNARAIVRAVIGLGRSLDLPVTAEGIETDAQYRMVVDEGCAQAQGYLFGRPDVAPAA 767

Query: 948 SI 949
           + 
Sbjct: 768 AA 769


>gi|104781933|ref|YP_608431.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95110920|emb|CAK15636.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Pseudomonas entomophila L48]
          Length = 696

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 212/435 (48%), Gaps = 7/435 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LTG+PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 255 ANQELTQLALHDTLTGLPNRTLLADRIDQAIGRVAEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L ++  R+   L   D LAR+ G+ F  +L+           A+     ++ P
Sbjct: 314 HHVGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELGEPDDAMGVAVKQVNLVSRP 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ +TAS+G   +  +     E+L+NA+ AMYHAK  G N    F   +++   
Sbjct: 373 FRVAEHDLQLTASLGIVLYPGNGADQHELLRNADAAMYHAKSAGKNGYSFFDASMNTNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL  A+E  +  L Y P       + +G EAL++W+HP+ G +    F+ +AE
Sbjct: 433 QQLQLLQDLRTALEQGQFRLHYQPKFDAAARQPIGAEALLRWEHPQHGLMLPDRFIGLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W DQ +     I +N+++       L + +   ++   
Sbjct: 493 KTGLIIPIGEWVLGEACRQMRQWMDQGHD-DWRIAVNLSAIQFCHAGLVDSVARALNDNG 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              +R+ L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANRLTLEITETTAMRDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  +     LTR+GCD +Q   +
Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDRQQDFLTRLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLKE 955
             P+     ++ L++
Sbjct: 672 GQPVPPEQFMQRLEQ 686


>gi|75906348|ref|YP_320644.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Anabaena variabilis ATCC
           29413]
 gi|75700073|gb|ABA19749.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Anabaena variabilis ATCC
           29413]
          Length = 611

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 228/442 (51%), Gaps = 5/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++ ++K    +L  A  D LTG+PNR  F+ RL   L+ +  + N +  V+ +D D++K 
Sbjct: 166 VSARQKLQGKLLDMALHDALTGLPNRILFIRRLGKALNRAKEESNYQFAVLFLDCDRFKV 225

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD++L+S+  R+   L     LARL G+ FGI+L    +       A  + 
Sbjct: 226 VNDSLGHLVGDELLISIANRLQSCLTTDSTLARLGGDEFGILLEDIKDIRMAIQIADYIL 285

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++M   L   E+ +  SIG             +L++A+ AMY AK  G      F  +
Sbjct: 286 QQLSMSFKLSRYEVFMNVSIGINWGHQGYDQPEYLLRDADTAMYRAKDSGRARYHVFDPA 345

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   +  + DL  +VE  E  + Y PII L   +I G EAL++W HP  G I+ +E
Sbjct: 346 MHEEVIKALEKENDLRRSVEKQEFVIYYQPIISLTTGKISGFEALVRWQHPTHGLIAPTE 405

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQ 815
           F+ +AEE  +I  IN+++L+   + +  W+     P  + I +N+++K  L       + 
Sbjct: 406 FIPVAEETGLINIINMWVLQSACQQLRIWQSHPMTPKNLSISVNLSAKLFLQTNFITQVD 465

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +I  T   PS ++L  +E+V+M N    +++L +L++  I L +DDFGT  S LSYL  
Sbjct: 466 QIIKDTQIDPSNLELEITETVIMENNNEIKVILQQLKERKIKLIMDDFGTGYSSLSYLHI 525

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PF+ +K + S +      ++ + ++ ++I +A ++  + IA+ +  +  +++L  + CD
Sbjct: 526 FPFNALKIDKSFVNRMLDNQENMGLVPAMISIAASMGMSAIAEGVETQEQLEQLKSLKCD 585

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q    + P+  N ++  +  
Sbjct: 586 FAQGYLFSRPIAQNMVMDFIAS 607


>gi|254522988|ref|ZP_05135043.1| PAS fold family protein [Stenotrophomonas sp. SKA14]
 gi|219720579|gb|EED39104.1| PAS fold family protein [Stenotrophomonas sp. SKA14]
          Length = 919

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 131/548 (23%), Positives = 238/548 (43%), Gaps = 10/548 (1%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           + ++    +  T +   I GL    +   +   L     + R+ F   L           
Sbjct: 368 EIEVQTRHMQWTEECYRIHGLRKEPI--TLDQALALYTEDSRNAFEAALVRIANGGLPE- 424

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q +           W+ + +      +G   R++ +  DIT ++++ E I   A  D LT
Sbjct: 425 QLDLCFYRQSGLRVWVQVLVELDR-RDGLPPRFVVLFRDITREREANERIELLAHYDLLT 483

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    ++    ++ +  D      ++ ID+D +K IND  G A GD +L +   R+
Sbjct: 484 GLPNRVLLGEQTAEAIEEA-RDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRL 542

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            + L+  D+  R SG+ F ++L            A  +  S+A P+   E  + V AS+G
Sbjct: 543 HQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVG 602

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717
            A    ++     +L+ A+ AMY AK  G N  + +   +      ++ ++  L  A+E 
Sbjct: 603 IAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIER 662

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P++     E   +EAL++W  P  G  S +EF+ IAE+   I  I  ++L  
Sbjct: 663 EEFSLAYQPLLHAHQGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNE 722

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R   +W          I +N+++  L D    E +  +     + P R++L  +ES +
Sbjct: 723 ACRQATAWDHAGLRFD-RIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESAL 781

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895
           + + +  R     L + G+ L +DDFGT  S L+YL   P   +K + S + G       
Sbjct: 782 IRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGT 841

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + ++I+ +   +   ++A+ +    +   L R GCD IQ    + PL    + + L++
Sbjct: 842 AEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQ 901

Query: 956 RFPLVKNT 963
           + P    T
Sbjct: 902 QHPAPGRT 909



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  LA+  +G  +WDWDI  DRV  TP +                  L  +H  D    R
Sbjct: 107 RWELALDSAGHSLWDWDIPSDRVARTPALGD----------ETATEMLSRVHSEDIGQVR 156

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             LD  +  +  +   +FR R AD Q+ W++ R R +   ++G  LR +G   DI +QK+
Sbjct: 157 AALDQHLRGQSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQ 216

Query: 525 SLEGILCNAFQ 535
               +      
Sbjct: 217 LESLLQEQQLH 227



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 9/155 (5%)

Query: 398 QGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           + +  + +   S A   +    W +D        +P++ ++L L  G++ G  R WL  +
Sbjct: 218 ESLLQEQQLHLSEAQRIASMGSWSFDPTTGHFWWSPELRSLLALEQGAVPGQ-RRWLKQL 276

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H   R   R          R     E  +   +     + + ++P+ +  G   R +G  
Sbjct: 277 HPRSRGALRAAWRRLWRDGRAA-NLELELTRGNEPSQHLRLWMQPLMDMEGQPKRLLGQV 335

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            +ITEQ ++   I         T + NR S L R+
Sbjct: 336 QNITEQHQTDALIRWR------TELLNRVSALGRI 364


>gi|241207102|ref|YP_002978198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860992|gb|ACS58659.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 779

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 141/780 (18%), Positives = 302/780 (38%), Gaps = 46/780 (5%)

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYM----VNRSSMLIPTFAMAWVVLGYISIDFG 237
           +D  +   +     + +   +A  L +         R  + I   A A+    + +    
Sbjct: 9   RDNHDWRLVLAAAAVCLVGAMAAMLLLSRAQECDAGRRKLWIGASAFAFGTGVWATHFIA 68

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
            L+    +P G  L     S +         + +        +++       +   ++  
Sbjct: 69  MLAYDGGMPIGYQLGLTTLSFLLSVVGSWAAILVASESRGRFSRIRGGVLMALGIASMHL 128

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY----------ERAVLLIPAWILI 347
                       +    +    +     +       +            ++  + A    
Sbjct: 129 TGMQAIETQAVILYDPFMTLSAVLAGALLSSAAFHTFFQLKGLRRLLASSITFVLAICA- 187

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
             +     + +   L  ++    L   L+  ++++  T++  +     F +   +D    
Sbjct: 188 LHFISMASITLVPDLGKEVPATVLDASLLAAIVVVAATMLILIALAVVFVESHLTDLRGL 247

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +     S + +         +        + G     + G   +                
Sbjct: 248 A---NASQEGLLIL-REGRIIDANERFQGLSGWKLAGLAGKAPS---------------A 288

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + + V         E  +   + +   + +    +     +    +    D+TE++++ E
Sbjct: 289 VLTAVQGTGQNRSSETLLNTRNGREIAVEVTTSRIVYRGHNCE--VLAVRDLTERRQAEE 346

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A  D LT +PNR  F  R+   L ++    N    +  +D+D++K +ND+ G A 
Sbjct: 347 MIEHLAHHDVLTDLPNRSLFDTRIRQALQMAER-KNSEVALFYLDLDRFKAVNDIFGHAE 405

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +   +  +    D +ARL G+ F II ++          A  +    A  ++ 
Sbjct: 406 GDRILRKVASILRRVADESDTIARLGGDEFAIIQLAGQQPAAAQKLAADILGEFAAEMDT 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
                 V  S+G A + +  + + E+  NA+ A+Y  KH G   V  F         +R 
Sbjct: 466 ARDPTAVGVSVGIALYPADGMAAEELCNNADTALYRVKHDGRGKVCFFDAEMDKAARNRR 525

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I+ +L  A+  +++++ Y PI+  +  EI G EAL++W+ P  G      F+ IAEE  
Sbjct: 526 QIESELRHAIVRNQIHVSYQPILDALSGEIGGYEALMRWNRPGHGLTEPDIFIPIAEESG 585

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +  ++L++  R+ + W       P+ I +N++    +   LCE ++A++++T  +P
Sbjct: 586 SIVQLGEWVLQQACREAVRWP-----LPLMIAVNLSPVQFMLPNLCERIEAILAETGLAP 640

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           SR++L  +E+ ++ + +R    L RL K+G+ + +DDFGT  S LS L   PFD +K + 
Sbjct: 641 SRLELEITEAALIRDRDRVMTTLLRLHKLGVHIVMDDFGTGFSSLSNLRSFPFDKIKVDR 700

Query: 886 SL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S   +        +I+R+II +  ++   ++ + +  E+  + +   GC  +Q   +  P
Sbjct: 701 SFTGVLEHDAAARSIVRAIIGLGHSLGMPVVTEGVETEMQRRIVVEEGCTQVQGLLLGKP 760


>gi|227819044|ref|YP_002823015.1| hypothetical protein NGR_b08060 [Sinorhizobium fredii NGR234]
 gi|227338043|gb|ACP22262.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 1105

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 128/614 (20%), Positives = 249/614 (40%), Gaps = 37/614 (6%)

Query: 357  AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL----AVL 412
               +R  + I  P L      I +L  +  I         ++      ER +      + 
Sbjct: 478  TGAERYMDVITAPVLGAFGEPIRMLAIWRDITEARKARDDAEAARLHAERLAERLSGVLE 537

Query: 413  GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
             + D V   D              +L          +  W     +ND   F       +
Sbjct: 538  STMDSVVVADRDWRIEYLNSKAMRLL--QVDEQAVGLDLW-RLFPVNDSSVFAVEYRKVM 594

Query: 473  -GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE---- 527
              +     +        +    W+ +   P                DITE+ K+ +    
Sbjct: 595  SEHSSTTFEA-----YLEGLERWLEVHAAPTFE------GISLFFRDITERHKAEQERLL 643

Query: 528  ---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                I   A  D +TG+PNRQ   +    + + +         V+ +D+D +K +ND  G
Sbjct: 644  AHRQIHHMARHDAVTGLPNRQFLREAFERLFEGTRARSKT--AVLSLDLDGFKAVNDAYG 701

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               GD +L S+  R+   ++  D +ARL G+ F I+        +  D +  +  ++  P
Sbjct: 702  HPTGDLLLRSVAERLRRCVEGGDTVARLGGDEFVILRTGVRQEEEAIDLSQRIIDALGAP 761

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
              L   +  +   +G A        + +++K A++A+Y AK RG      F        +
Sbjct: 762  YELDGVQADIGVRVGIAFSPRDGRAADQLIKAADIALYRAKARGRGTYIQFEPGMDAHLQ 821

Query: 705  --VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                +K +L  A+ N EL L Y P++ L    I   EAL++W+HP+ G IS  +F+ +AE
Sbjct: 822  ARQQMKVELRRALANDELELHYQPLVNLRTGLIATCEALVRWNHPEKGAISPVDFIPLAE 881

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            E  +I  +  ++L R   + + W  Q     + + +N++        L   ++  + ++ 
Sbjct: 882  ETGLIVPLGEWILRRACAEAVQWPQQ-----VSVAVNLSPLQFRSRRLVSVVRDTLKESG 936

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               SR+++  +ESV++   + +  +L  +R++G+ + +DDFGT  S L YL    FD +K
Sbjct: 937  LDASRLQIEVTESVLLDESDNNLRVLQDIRRLGVKIAMDDFGTGYSSLGYLRTFAFDKIK 996

Query: 883  FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +   ++     ++ +AI+R++  + + +  T   + +  +  +  +   G D  Q    
Sbjct: 997  VDRGFISDLPTGKESLAIIRAVAGIGRTLGITTAVEGVETQTQLDVIHAEGFDEAQGYLF 1056

Query: 941  ASPLGFNSILKLLK 954
            A PL    +L+ ++
Sbjct: 1057 ARPLTAARVLEAIQ 1070



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 3/143 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + +++++       + +     R       +  ++W  D     V  +       G  + 
Sbjct: 250 YGLVENIDDRRKALEALKESEARFRAIADDAPVMIWVADENGASVYQSRVWLETTGQIAE 309

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G    WL  IH +DR +     +  +  R   ++ E+R+R  D  + W+I   +P  
Sbjct: 310 QAQG--FGWLDAIHPDDRIDAEAAFNEALRLRT-PVRTEYRLRRVDGSYAWVIDVGQPRF 366

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
            ++G  L Y+G+  DITE++++ 
Sbjct: 367 ATDGGFLGYVGVGLDITERRQAE 389



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    I  V A       + +  E     V     + W  D   D +   P    I G  
Sbjct: 122 LVVATILDVTARRRAESELRASEEHYRSLVELHPQVPWTADPSGDVLEVGPRWKEITGFE 181

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    W   +  +D +         V      L  EFR+      +HW   R   
Sbjct: 182 PADAFGT--GWAKAMQPDDLETVERQWSKSVATGN-PLDVEFRLADGQGGYHWFRSRAAA 238

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
               +G + R+ G+  +I +++K+LE
Sbjct: 239 RRAEDGTVTRWYGLVENIDDRRKALE 264



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 3/144 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +             + D +   D+    +        + GL   +    +R 
Sbjct: 384 ERRQAELALVESEALIRSVFESTPDCIRLLDLDGRPLLMNRAGRQLFGLGESTRLEDVR- 442

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +  +D      +       R  R+  E  +R       +M +   P+  + G+ +R
Sbjct: 443 WEKMVPASDVAKAEAVYSEVRQGRTTRV--ETAIRDNTGAERYMDVITAPVLGAFGEPIR 500

Query: 512 YIGIANDITEQKKSLEGILCNAFQ 535
            + I  DITE +K+ +        
Sbjct: 501 MLAIWRDITEARKARDDAEAARLH 524



 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 38/131 (29%), Gaps = 5/131 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +      +   D              ++G     + G        +  ++ D  R 
Sbjct: 19  LEAILDAIPQPIIVKDEQSQFRFLNDAACALIGRGRDDLIGLTD--FDVLPASEADRIRE 76

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIGIANDITEQKK 524
           +    +        +E  + +AD     ++ + R    ++G       +    D+T +++
Sbjct: 77  MDRRVLST-GEEFLFEQEITSADGSVRNLLTQKRRAELTSGHSKQQLVVATILDVTARRR 135

Query: 525 SLEGILCNAFQ 535
           +   +  +   
Sbjct: 136 AESELRASEEH 146


>gi|292492708|ref|YP_003528147.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291581303|gb|ADE15760.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 573

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 229/444 (51%), Gaps = 9/444 (2%)

Query: 520 TEQKKSLE---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           T+ KK+          A  D LTG+PNR    DRL   +  +      +  ++ +D+D++
Sbjct: 131 TQLKKTQAKETRSRHLAQYDALTGLPNRILLQDRLAQSMAET-LHSRQQLALLFLDLDRF 189

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G  +GD  L+ +   +   +   D + R+ G+ F II     ++ + A  A  
Sbjct: 190 KDINDSFGHEIGDAELIRVAGVLHGCVGPTDTVLRIGGDEFAIIQTHILDADEAALLAQR 249

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +IA P  L   +I    SIG   + S   T+ ++LKNA++A+YHAKH G N+ + + 
Sbjct: 250 ILGAIAEPHRLQGHKIHNNVSIGITLFPSDAPTAKQLLKNADIALYHAKHEGRNNYQLYM 309

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    RV + +DL  A+E+ +L+L + P + L     V  EAL++W HP+ G ++ 
Sbjct: 310 PDINARAHSRVALAKDLQSALESGDLHLQFQPQLDLTSGRTVSFEALLRWRHPQHGMLAR 369

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AEE  +I  I  ++LE   +   SW+ Q +  P+ + +N++ +     +L  G+
Sbjct: 370 QTFIRLAEETGLIIPIGAWVLEIACQTCFSWQ-QFHSGPLQVAVNLSPRQFRQPDLAGGI 428

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A++ +T  SP  +++  +E +++ + + +   L  L  +G+ +++DDFGT  S L+YL 
Sbjct: 429 AAILERTGLSPPSLEVEITEGLLIEDMDSALKTLQSLSTLGVRISVDDFGTGHSSLTYLK 488

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           ++P D++K + S +    E  +  AI ++II +  ++   ++A+ +  +     L   GC
Sbjct: 489 HLPLDSIKIDRSFIHDIPEEIESRAITKAIIALGHSLNLEVVAEGVETQEQFLYLQEYGC 548

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D +Q   ++ PL      K  +E+
Sbjct: 549 DRVQGYFISKPLNAPRAQKWWQEK 572


>gi|239820749|ref|YP_002947934.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
 gi|239805602|gb|ACS22668.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
          Length = 755

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/534 (24%), Positives = 247/534 (46%), Gaps = 9/534 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  + +I    G    ++          I   D+      +   +         E+R+  
Sbjct: 207 IYISHNITK-FGHEPAALLANPDWADVLIDPADQPGVAAAMARVLEKDAEGASIEYRLCT 265

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D    W+  R  P+ + +G ++   GI  D+TE+K + E +   A  D LTG+ NR + 
Sbjct: 266 GDGARRWVENRYVPVRDKDGRLIEVEGIVIDVTERKAAEEQLAKLARTDGLTGLANRATL 325

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           ++RL      +A   ++   +  +D+D +K +ND+ G   GD +L  +  R+    +  D
Sbjct: 326 VERLHQA-HAAARRGSVPFALHCLDLDHFKPVNDMFGHPGGDLLLREVALRLKNCTRETD 384

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARL G+ F ++     ++      A  +++ +A P  +   ++  +ASIG   +T   
Sbjct: 385 VVARLGGDEFAVLQSEMADAAAAGALAAKIQQELARPYMIDGNQVHASASIGICPYTPGS 444

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYH 725
            +  EML  A+LA+Y +K +G N              DRV + EDL  A+E  +L L Y 
Sbjct: 445 ESPEEMLAQADLALYRSKEQGRNQYHFHSEELDFEVRDRVALGEDLKQAIEREQLELYYQ 504

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L   +IVG+EAL++W+HP+ G + ++ F+ IAE    I A+  ++L++  R +  W
Sbjct: 505 PQVELSSGKIVGVEALLRWNHPRRGLLEANAFVPIAERTGGIVALGRWVLDQACRQMSLW 564

Query: 786 RDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           R+Q   PP+ + IN++   L   +EL   +   ++K    PS ++   +ES +       
Sbjct: 565 REQGVAPPV-VAINLSLGQLRQGSELIRDVTEGLAKWRLEPSVLEFDVTESTLAQMTWTH 623

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
             +L RLR +G+ + +DDFGT+ S   YL     + +K   S++          A +R+I
Sbjct: 624 NDVLPRLRALGVRIAIDDFGTEYSSFEYLRTYRVNHLKIAQSMLKRAIDDPDSAATVRAI 683

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKE 955
           + +A+     II + +  +  +  L   G     Q  + +  +        L+ 
Sbjct: 684 MNLAREARIGIIVEGLETQTQLAFLQSTGATTLAQGYYFSEAVMATEAGDFLRS 737


>gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans]
 gi|133738375|emb|CAL61420.1| conserved hypothetical protein; putative GGDEF, MHYT and EAL
           domains; putative membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 715

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 122/433 (28%), Positives = 218/433 (50%), Gaps = 7/433 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A QDNLT +PNR    DRL  IL  +    + R  +M ID+D +K IND LG
Sbjct: 259 ANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERT-HTRFALMFIDLDGFKAINDSLG 317

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L+ + +RI   ++  D  ARL G+ F +++         A  A  +   I  P
Sbjct: 318 HHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIE-VTEPEDAASVADKLCNIINQP 376

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             +    + V+AS+G   +     T  ++L NA+ AMYH K  G N    F   +++   
Sbjct: 377 FEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNANAH 436

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +++ + +DL LA+E  E  L Y P     +  +VG EAL++W HP  G I+  +F+ +AE
Sbjct: 437 NQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAE 496

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L+   R +  W D+       + +N+++    ++ L E +Q  +++  
Sbjct: 497 KTGLIVPIGEWVLDEACRQMRIWHDE-GNQHWKVAVNLSAVQFSNDHLIELVQTTLARNN 555

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +  S + L  +ES  M + E S  +L +L  +GI +++DDFGT  S L YL  +P   +K
Sbjct: 556 FPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELK 615

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +    +     +I+ +II + +++   I+A+ +  E     L  +GCD +Q   +
Sbjct: 616 IDRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLM 675

Query: 941 ASPLGFNSILKLL 953
             P+  +  +  +
Sbjct: 676 GRPMAPDQFMDAI 688


>gi|332141558|ref|YP_004427296.1| GGDEF domain-containing PAS signal transduction protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551580|gb|AEA98298.1| GGDEF domain-containing PAS signal transduction protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 794

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 134/502 (26%), Positives = 227/502 (45%), Gaps = 17/502 (3%)

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R          +      +   F +            +  P       I ++  IA+   
Sbjct: 304 RAGVAACWSQPIRGASTEVIGTFAIYHR--------YKAVPTPEEVVLIEQFAHIASIAI 355

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++ E I   A  D LTG+PNR   LD L   L  +  + + R  V  +D+D +K IN
Sbjct: 356 ERERASELIWKQANFDTLTGLPNRNLMLDHLQLALKTADREGD-RVAVAFLDLDNFKDIN 414

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L+    RI + L+  D ++RL G+ F +IL S      I      +   
Sbjct: 415 DTLGHDVGDQLLIECAERIKQCLRANDTVSRLGGDEFVVILNSIETLSSIDIVVQKILDV 474

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P  +    +  +AS+G   +         +LKNA+ AMY AK  G N  + +     
Sbjct: 475 ILKPYLINVERVHTSASLGVTLYPDDARDIKGLLKNADQAMYGAKDLGKNSYKYYTQDMQ 534

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ +  DL  A++N EL++ Y PI    D + +  EAL++W HP+ G I+  EF+
Sbjct: 535 AVAVKRITLLNDLRYAIQNDELFIEYQPITSFKDGKAIKAEALLRWQHPEKGRIAPDEFI 594

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQA 816
            +AEE  +I  I+ ++ E + +++  W+       + I IN +       E  + + +  
Sbjct: 595 PLAEESGLIIEISNWVFEEVCKNVKRWQTHYCRE-LQICINTSPSQYFQQETSITDWLTR 653

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +   +   I L  +E+++M         L + R+ G+ + LDDFGT  S +SYL  +
Sbjct: 654 LLDE-NIAARSILLEVTENLLMEADTNVSKKLFQFRQAGVDIALDDFGTGYSSISYLKKL 712

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +   T+      +  +II MAK +   ++A+ +  +     L  MGCD+
Sbjct: 713 PTDYLKIDKSFVKTMTDVSNDKVLCEAIIVMAKKLGIKVVAEGVETQEQYDILNNMGCDF 772

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q   +A P+   +    LK  
Sbjct: 773 GQGYFIARPMSKTNFEAFLKAH 794


>gi|187927489|ref|YP_001897976.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|309779809|ref|ZP_07674564.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
 gi|187724379|gb|ACD25544.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|308921386|gb|EFP67028.1| GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 685

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 118/432 (27%), Positives = 215/432 (49%), Gaps = 7/432 (1%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  DNLT + NR    DRLT  +  +  + + R  +M +D+D +K +NDV G  
Sbjct: 257 KELAYLALHDNLTKLSNRVLLEDRLTQAIRTAEREKH-RFALMFMDLDGFKAVNDVYGHH 315

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +RIG  ++  D +AR+ G+ F  +L   ++       A A+ + +  P  
Sbjct: 316 VGDLLLIDVAQRIGARVRQQDTVARVGGDEFV-VLAYVDDPEDAGTLANALLEVVREPFM 374

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDR 704
               E+ V+ SIG A +        ++L NA+ AMYHAK  G N    F  S       +
Sbjct: 375 AGGHELRVSTSIGIAIYPGDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMNADVHQQ 434

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + + +DL  AVE  EL L Y P     +  I+G+EAL++W HP+ G + + EF+ +AE+ 
Sbjct: 435 LQLVQDLRRAVERHELVLHYQPKFNAPNGPIMGVEALVRWQHPQRGLVPADEFIPLAEKT 494

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L+   R +  W+ +       + +N+++       L + ++  +++    
Sbjct: 495 GLIVPLGAWVLDEACRQMAQWQRE-GHSGWSVAVNLSALQFGHAALIDSVRDTLARHALD 553

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + L  +ES  M + + S  +L RL  +G+ +++DDFGT  S L YL  +P   +K +
Sbjct: 554 PRSLTLEITESTAMRDVDASLQILQRLDAMGVRISIDDFGTGYSSLLYLKRLPASELKID 613

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +       +  AI+ +I+ + + +   I+A+ +        LTR+GC  +Q   +  
Sbjct: 614 RGFVRDLAHDTEDAAIVSAIVALGQTLNLRIVAEGVETAEQQAFLTRLGCHSLQGYLLGR 673

Query: 943 PLGFNSILKLLK 954
           P+   S+   + 
Sbjct: 674 PMTAESLSAAMA 685


>gi|77918430|ref|YP_356245.1| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544513|gb|ABA88075.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 976

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 218/439 (49%), Gaps = 6/439 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             I+EQ K+ + I   A  D LTG+ NR    +R    +  +    + +  + ++D+D +
Sbjct: 516 RFISEQNKAQKKIAYLAHYDQLTGLANRSLLKERFDYAVRHAMRSGS-QVALCLLDLDGF 574

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND+ G  VGD +L  + +R+   ++  D+ AR+ G+ F I+      +         
Sbjct: 575 KAINDLQGHHVGDQLLCEVAKRLQTSIRSTDMAARIGGDEFVILFTDMQKTSVATTLVQK 634

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
                    +L E   T+TAS+G A +         + K+A+ AMY AK  G N V+ FR
Sbjct: 635 AMSCFTSAYDLQEHTHTITASMGVAIFPEDGHDFPTLFKHADAAMYFAKESGRNGVQFFR 694

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +R+ ++ +L  A++  +L L Y PI +L ++ IVGLEAL++W HP+ G +  
Sbjct: 695 QEIGQRVQNRLTMETELRQALQEDQLELHYQPIWQLTEKCIVGLEALVRWRHPQKGLLPP 754

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE  +I+A+  ++L    RD+ SWR+Q     + + +NI+++ L  ++    +
Sbjct: 755 DRFIPIAEESNLIQALGQWVLNAACRDMRSWRNQ-GFESLPVSVNISARQLFHDDFTSSL 813

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L+ +    P +++L  +E++ +        ++  L+ IG+ L LDDFGT  S LSYL 
Sbjct: 814 ARLLKEYALPPEQLELEVTETIFLQKDTTVEKVMNHLKNIGVGLVLDDFGTGYSSLSYLN 873

Query: 875 YIPFDTVKFNGSLMTGSTEKRI-AILRS-IIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +K + S M    +K   AIL + II MA+++   ++A+ +        L   GC
Sbjct: 874 RFHIDKLKIDRSFMAHICQKEQDAILTATIIRMAQSLGMQVVAEGVETAGQELFLMEQGC 933

Query: 933 DYIQDSHVASPLGFNSILK 951
           D  Q      P    S+  
Sbjct: 934 DLAQGYFYYKPQPIESLRD 952



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 7/158 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442
            T+   +  +    + +  +       +    D+V+  D     +    P    +  +  
Sbjct: 185 ATMFSDITESHNAKEALQENQSLIQSLLRSMQDLVFVLDTDLVFQTYHQPACGKLF-VLP 243

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G   + +      +                     E+ +   D +     + I P 
Sbjct: 244 EQFIGKHLDEVNL--PEEVVQATKTALEHTLTTGTVTHTEYWLDLPDGRT-CFDMCISPY 300

Query: 503 SNSNGDILRYIGIANDITEQKKSLE--GILCNAFQDNL 538
              N  I     +A DITE+K++ E       A    L
Sbjct: 301 RAQNRQIKGLTCVARDITERKQAEETLEKRIQALTRPL 338


>gi|91978607|ref|YP_571266.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91685063|gb|ABE41365.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 777

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 134/690 (19%), Positives = 277/690 (40%), Gaps = 28/690 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
              RW  +         A +     ++        +               ++     + 
Sbjct: 88  DAQRWEMRYQIGAMLYAAALGFWCVIALIGTDDPVAHM-----ICTCVTLSYMAAGAGRT 142

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           Y R  +     IL+    +   +A    +       AL+  +  + +    T +Q +   
Sbjct: 143 YGRPWIFHL-QILLACGSMSAALAWHGNIYYA--GLALLNVVFFVGVKHITTSLQQIFVR 199

Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +   S    +   A+      +  +               ++ L   S+       
Sbjct: 200 ALLGRERESALAAQFDTALNNMPHGLCMFGPDGRLAVMNHRFTEMMKL-RDSLVKNAPTA 258

Query: 453 LPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
              +    +      +     +      L  E      ++    +    +PM+       
Sbjct: 259 TEIVAACVSIGAISASSGRLILSEVDNSLAGEIVTVGDESTPRSLSWTFQPMAGG----- 313

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVM 569
             + +  DITE++ +   I+  A  D LTG+PNR +F D +  IL  S   +      ++
Sbjct: 314 GTVVLVEDITERRNAEARIIHLARYDELTGLPNRVNFHDEIERILTASQGQNKAALSALL 373

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D++K++ND LG   GD +L ++  R+ ++L+  D +AR  G+ F +   +  ++  
Sbjct: 374 FIDLDQFKQVNDTLGHPCGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNIRSNED 433

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  +   ++    +    + + ASIG A  T+    +  +LKNA++A+Y AK  G 
Sbjct: 434 AAVLARRIVDRLSDRYLIDHHVVEIGASIGIAL-TAPATRADILLKNADMALYRAKADGR 492

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                FR    ++      ++ DL  A+ N E  L + P++ L    I   EAL++W+HP
Sbjct: 493 GTYCFFREEMAKTVEARRILELDLRKALANEEFELYFQPLVNLKTGRIATCEALLRWNHP 552

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S  + + +AEE+ +I  +  ++L +   + + W +Q     + + +N +S+    
Sbjct: 553 VRGTVSPVDIIPVAEEMGLIVDLGRWILRKACMECMMWPEQ-----VSVAVNFSSQQFHQ 607

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   ++  +  +    SR+++  +ES ++ N + +   L +L   G+ ++LDDFGT  
Sbjct: 608 RDVINEVRYALEVSGLPASRLEIEITESSLLRNTQFTHDALEQLHAEGVRISLDDFGTGY 667

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           S LSYL   P   VK + S + G    R   +L  +  ++ ++   ++ + I     ++ 
Sbjct: 668 SSLSYLHSFPLQKVKIDRSFLEGIDSDRPLTLLHGVARLSADLGMAVVVEGIETNEQLER 727

Query: 927 LTRMG-CDYIQDSHVASPLGFNSILKLLKE 955
           +   G     Q    + P+  + I +LL  
Sbjct: 728 INSEGTVTEGQGYLFSRPVPASRIRQLLAA 757


>gi|315499329|ref|YP_004088133.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Asticcacaulis excentricus CB 48]
 gi|315417341|gb|ADU13982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Asticcacaulis excentricus CB 48]
          Length = 622

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 248/567 (43%), Gaps = 27/567 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +  +G+R    +      +  +D             T   +   + +    + 
Sbjct: 60  LRQSLRDLRENGQRFQATIETLPHGICLYDRDGHICEYNRAYLTFFDVDKAN-NARGLSL 118

Query: 453 LPYIHINDR------DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           +  +    R           +L+     + G          ++ ++ W   R   +S + 
Sbjct: 119 VQALEAAGRRMSASNARLMQLLEYLAIPKTG---------HSEGEYVWPSGRTVRVSRTG 169

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +   Y+ +  DITE   +   I   A  D LT + NR  F  RL  ++  ++       
Sbjct: 170 VEGGGYLDVIADITESHLARATIERMANFDALTELANRNLFQKRLADLVARASARSMAA- 228

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D++K +ND+ G  VGD +L  + RR+ ++L+  D+ ARL G+ F ++L   + 
Sbjct: 229 -ILSLDLDRFKAVNDLYGHGVGDALLAKVARRLVDVLRPGDLAARLGGDEFAVLLEKVSA 287

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +   ++ P  +   EI + AS+G            +++++A+ A+Y AK 
Sbjct: 288 HHDAHQVAKRLVSHLSAPYEIDGLEIVIGASVGIEFIDDPHAAPIDLMRHADQALYAAKR 347

Query: 687 RGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N +  +      +   R  I+ DL  A ++ E +LVY PI  +    + G EAL++W
Sbjct: 348 SGRNDIAVYDAKLHETYLERQQIEADLRKAAQSREFFLVYQPIFCVKSARVCGYEALLRW 407

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P  G +S +EF+ +AEE  +I+ I  +++ +  +D  +  +        I +N++   
Sbjct: 408 QSPVRGIVSPNEFIPVAEETGIIEEIGSWVIRKACKDAAALPEHT-----TIAVNVSPVQ 462

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                    +   +  +  +P+R+++  +E V++G+   +  +L  L+ +G+ ++LDDFG
Sbjct: 463 FRSRAFVSVVTRALQDSRINPNRLEIEITEGVMIGDAGEALKILRALKALGVRISLDDFG 522

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S  SY+   PFD +K + S +    ++    AI+R++  M  ++     A+ +  E 
Sbjct: 523 TGYSSFSYISAFPFDKIKIDQSFVRDLGQRSESLAIIRAVSGMCSSLGIVSTAEGVETEQ 582

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
             + L    CD +Q      P+  N +
Sbjct: 583 QFEILRTEHCDTMQGYLFGKPVALNEL 609


>gi|322507765|gb|ADX03219.1| Sensory box protein [Acinetobacter baumannii 1656-2]
          Length = 949

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 266/577 (46%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    ++  ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKIADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944



 Score = 91.2 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
                  + I+   L   +      +        + ++S+ II L       R+      
Sbjct: 95  CLTSGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 149

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
             +       +   +  +       +      ++    T    Y   + Y++   L+   
Sbjct: 150 --YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 204

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
                        +     +      L   L   V        Q         Q +    
Sbjct: 205 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 257

Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449
                  ER        + A   +G   WDWDI + ++       T       + + P+ 
Sbjct: 258 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 312

Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506
            ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +S     
Sbjct: 313 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 372

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
              LR +G+  DI ++KK  E +  +A
Sbjct: 373 NKALRMVGMTRDIHQEKKDQEHLRLSA 399


>gi|118443995|ref|YP_877082.1| nitrogen fixation positive activator [Clostridium novyi NT]
 gi|118134451|gb|ABK61495.1| nitrogen fixation positive activator, putative [Clostridium novyi
           NT]
          Length = 591

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 132/560 (23%), Positives = 255/560 (45%), Gaps = 11/560 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S  +  S + +   D     +     +  I       +       +  I     + ++ 
Sbjct: 39  FSEIIDSSKEGIMILDESLTVLYANYTLLKICERNVEEVINERIYNINKIK---VEFYKN 95

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I+ +    +    + E+R  +   + + + I  + + +       YI I  D+T+ K+S 
Sbjct: 96  IVMNIKQNKIWTGELEYR--SKSGRMYSLSILGKSIISQRDLQTYYIVIFEDVTKLKESE 153

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             I      D LT +P ++ F+  L   +        L   V+ + +D +K IN+ +G  
Sbjct: 154 RDINYLKKYDILTQLPQKELFVKNLKDEIIRLEGTGKL-VGVVTLGLDDFKFINEAMGHL 212

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L  +TRR+   L     LAR++G+ FGIIL    +   I +    +++       
Sbjct: 213 SGDRLLRDVTRRLKT-LDKKCFLARITGDEFGIILTECEDIKDIENRINHIQQLFCKAFV 271

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + ++E+ VTASIG + +    + ++E++ NA  A    K  G N  + +     ++    
Sbjct: 272 INDQEVFVTASIGISIYPLDALNANELIMNATSAQNFVKKNGKNDYKIYSKDISKNAYKR 331

Query: 707 IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           I+    L  AVEN++  L Y P + L    ++G+EALI+W+HPK G +   +F+ +AE+ 
Sbjct: 332 IEMIALLKHAVENNQFVLHYQPQVSLESGSVMGVEALIRWNHPKLGLVYPDKFIPLAEKT 391

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++    R    W D      + + +N+++      +L + +   +  +   
Sbjct: 392 GLIIPMGEWVIREACRQNKIWHDSGFEE-LVVSVNLSALQFEKEDLVDVIVDALKTSGLD 450

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +++  +E ++M N +++   L  L++IG+ + +DDFGT  S LSYL   P D +K +
Sbjct: 451 PKFLEVEITEGILMVNTDKAIQTLNDLKEIGVKIAIDDFGTGYSSLSYLKEFPIDRLKID 510

Query: 885 GSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S + G   E   AI   II +AK++   ++A+       IK L    CD IQ  + + P
Sbjct: 511 RSFIMGIPKEDNGAIANIIIELAKSLHLNVVAEGTETLDHIKFLKVRKCDTIQGYYFSKP 570

Query: 944 LGFNSILKLLKERFPLVKNT 963
           +      ++L++   L  N+
Sbjct: 571 VSGEGFTEILRDNKKLYSNS 590


>gi|88811130|ref|ZP_01126386.1| putative signal transducer protein with histidine kinase domain
           [Nitrococcus mobilis Nb-231]
 gi|88791669|gb|EAR22780.1| putative signal transducer protein with histidine kinase domain
           [Nitrococcus mobilis Nb-231]
          Length = 654

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 156/651 (23%), Positives = 281/651 (43%), Gaps = 14/651 (2%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
           +R+  A  V      ++ HG+     A     +   +   F+ + +A          Q A
Sbjct: 5   SRLISAIAVAITAGVLVSHGVWELSVASKPTSSIGALLELFVAVVLAAWSWYQLRHTQHA 64

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L    V + + +    +            +  +    ++ +    D V+  D     +  
Sbjct: 65  LPTTRVSL-LTLPAPRLGFAWINVKAHTQLDENPCYHAMILDSMADAVFIIDHGFRILDC 123

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                 +LG  +  + G   N    +     D     +D+ V +  GR Q E     +  
Sbjct: 124 NRAAEALLGRDNAELKGIALN--QLLRAQQVDTLLKAIDTTVTH-TGRWQGELCFGNSQG 180

Query: 491 QFHWMIIRIRPMSNSNGDILR-YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                     P+ +S+       +G+  DI E+K +   +   A  D LT +PNR  F D
Sbjct: 181 --ILTEAIFVPLMDSSTKRQGTLLGVVRDIRERKAAETHLGYAANYDPLTALPNRSLFRD 238

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL  +L  ++     +  + +ID+D +K IN+ LG A GD VL  + +R+G  +   D L
Sbjct: 239 RLDQVLADASWQRR-QIALHLIDLDNFKLINEGLGHAQGDQVLQRIAQRLGAAVHRSDTL 297

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKI 668
           AR+ G++F +I  S +   + A  A  +   +   + +   RE+ VTASIG A +  + +
Sbjct: 298 ARVGGDKFALIQTSLHRVEQSAFRAQHLLDVVEPTLTIAGERELNVTASIGIALYPENGL 357

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
            + E+  NAELA+  AK  G N    F        RV   ++ DL  A+ + E    Y P
Sbjct: 358 ATEELTHNAELALSRAKLEGRNAYCFFVRGMEEEMRVRCALEHDLGQALTHDEFLFHYQP 417

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + L    ++G EALI+W HPK+G +  S F+ +AEE   I  +  + L  + R +  W+
Sbjct: 418 QVELTTGRVIGCEALIRWHHPKYGLLYPSRFISMAEESGAIIPLGEWSLREVCRQLKVWQ 477

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            +       I +N+++      E    +  ++      P+ ++L  +ES+ M NPE +  
Sbjct: 478 REGLPIG-HIAVNLSAVQFRYPEFASLVDQVLRDASVDPACLELEVTESLAMENPELAAS 536

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904
           L+ +L+++G+ L +DDFG   S L YL   P   +K + SL+          AI  ++I 
Sbjct: 537 LVAQLKRLGVKLAIDDFGAGYSSLGYLKRFPVQMLKIDRSLIDELATNGCDAAITIAVIE 596

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +++  ++A+ I     +  L R  CD+ Q +  A+ +        ++ 
Sbjct: 597 LGHSLDMHVLAEGIETREQLDFLRRHHCDFGQGTSFAAAMPAGEFAACVRR 647


>gi|124267633|ref|YP_001021637.1| signal transduction protein [Methylibium petroleiphilum PM1]
 gi|124260408|gb|ABM95402.1| signal transduction protein [Methylibium petroleiphilum PM1]
          Length = 965

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 146/551 (26%), Positives = 260/551 (47%), Gaps = 22/551 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +           AV  + D ++                 +LGL    +          +
Sbjct: 140 RERARRQLRLTRHAVEQAHDALFLVGPDGAYRDANAAACRLLGLTRKQLLRL------RV 193

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           H  D     T           RG  ++E  VR  D     + + +  ++ S+G+   ++ 
Sbjct: 194 HDIDTQVNETSWPQRWHEMCERGSSRFETNVRHHDGHEIPVDVSVSLVT-SDGETFAHVC 252

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +D+ +++ +   I      D LTG+PNRQ   + L   L  SAT       V+V+++D
Sbjct: 253 V-DDLRDRRAAERRIQQLLQFDELTGLPNRQRLFEHLGATLQTSATT-----AVLVLELD 306

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K+IND LG  +GD VL  +  RI   ++  D++AR  G+ F I++ + +        A
Sbjct: 307 RFKRINDGLGPQIGDAVLREVAGRIAATVRSVDLVARRGGDEFVIVMPAPSVP--APHVA 364

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++IA P+ +   EI +T  IG A   +    +  +L+ A  A+  AK  G N V  
Sbjct: 365 QTLLETIARPMTIEGHEIHLTCGIGIAMAPADGDRADTLLRRANAALEQAKRLGRNQVNV 424

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +         +++ ++  L  A+ + +  L Y P + L    IVG+EAL++W HP  G I
Sbjct: 425 YAGAPHDDDPEQMALETALRHALRDEQFELHYQPQVDLAQGRIVGVEALLRWQHPTLGRI 484

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ IAEE  +I  I  ++L        +W+     PP+ + +N++++ LL  +L  
Sbjct: 485 SPDRFIPIAEETGLIVPIGDWVLRHAIEQAAAWQRARL-PPLRMAVNLSARQLLQPDLAR 543

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++ T   P R  +  +ES+++GN +++   L  LR +G+ ++LDDFGT  S LSY
Sbjct: 544 RIEGLLAATGLDPRRFGVEVTESMLIGNFDQAVQHLRALRALGVEVSLDDFGTGYSSLSY 603

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D VK + SL+   T   + ++I R+II MA  ++  ++A+ +  E     L   
Sbjct: 604 LRRLPVDVVKIDRSLVPDVTAPAEDVSITRAIITMAHQLQMKVLAEGVESEGQAALLAAN 663

Query: 931 GCDYIQDSHVA 941
            CD +Q    +
Sbjct: 664 QCDQMQGWWFS 674



 Score = 39.9 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 14/126 (11%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGR 478
           D               +G     + G       W     ++ R   +  L S       R
Sbjct: 41  DADGVLRYANQAALQAIGATPEQVLGLRFETTPWWQGCKLSQR-RLQQALASASRGEASR 99

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL------CN 532
                 +R        M   + P+   +G +   I  A+D++E++++   +         
Sbjct: 100 FDVRLAIR---GDTLAMDFSLLPLYGPDGRVAWLIPSAHDVSERERARRQLRLTRHAVEQ 156

Query: 533 AFQDNL 538
           A  D L
Sbjct: 157 A-HDAL 161


>gi|327482494|gb|AEA85804.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
          Length = 890

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 151/582 (25%), Positives = 261/582 (44%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
              +    A    +Q   S      L   AV  S       D         P    I   
Sbjct: 315 AGELADQYAQVLANQQRLSATHMLGLFQRAVEQSASAFILVDRDGRVEYVNPAFTAISQF 374

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G     L  +   +         S + +     Q EFR R  + + +W  + I 
Sbjct: 375 SESEVRGQRLADLKAL--ENLGELLFDTSSVLAHSN-SWQGEFRSRRKNLEPYWGQLSIS 431

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + N +G +  YIGI  DIT  K + + I   A+ DNLT + NR  F+  +       A 
Sbjct: 432 KVFNDDGMLTHYIGIYEDITRSKLAHQHIERLAYTDNLTNLGNRPFFIRSIEERFAAGAE 491

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
               R  ++++DID +K+IND LG   GD +L SL RR+   L    +LAR + N F ++
Sbjct: 492 ---PRLCLLLVDIDNFKRINDSLGHQTGDKLLTSLARRLRNGLSQQSVLARFASNEFALL 548

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +     I   A  + + +  P+ + ++ I+V+ S+G A           ++K+A  A
Sbjct: 549 FDDKGLEEGI-RLADQVLRILDKPLFVDKQLISVSGSLGLACSPQHGRDPETLMKHAGQA 607

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           ++ AK  G N V+ F  +        +  + +L  A+  +EL + Y P + L    + GL
Sbjct: 608 LHKAKANGKNQVQIFTEALHAEANYKLFVENNLRRALLQNELEVFYQPKLCLHTGRLQGL 667

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G I   +F+ +AEE  +I  I  +++    R  ++  +     P  I I
Sbjct: 668 EALLRWNHPEKGMIRPEQFISVAEETGLIIPIGKWVVREACRMGVTLSELGLGKP-QIAI 726

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ K   D +L   + A++ +      +++L  +ES+++   E +R  L  L+ +G++L
Sbjct: 727 NLSPKQFSDPDLLSSIAAILLEEKLPAGQLELELTESLLLDATEETRQQLIGLKALGLTL 786

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL   P D +K + S +      +  + I  ++I MA+ +   ++A+
Sbjct: 787 AMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDNQDDVEITSAVIAMARKLHLKVVAE 846

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            I     +K L R  CD  Q      P+    +   L+ R+P
Sbjct: 847 GIETPEQLKFLRRHRCDIGQGYLFDKPIPGTGLTDALR-RYP 887


>gi|56461444|ref|YP_156725.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180454|gb|AAV83176.1| Intracellular signaling protein (GAF,PAS,GGDEF,EAL domains)
           [Idiomarina loihiensis L2TR]
          Length = 766

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 133/571 (23%), Positives = 257/571 (45%), Gaps = 25/571 (4%)

Query: 400 IFSDGERQSLA-VLGS--------GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           I  + +R+  A +  S         D V+  D+  +  +    +  +L L    + G   
Sbjct: 202 IEHEEQRRKQARLEQSQSSLFTHNPDAVFMLDLEGNFTSVNRSVCELLLLKEEDLLGKHY 261

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                +  +D+       ++           E +V+    Q H + I   P+   +G+I 
Sbjct: 262 ELA--VPESDQKRTSEHFEAAKAGIPQSY--EIKVKDQTGQLHDLAITNIPII-IDGEIT 316

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              GIA DITE+ +  E +      D+LT + NR +   RL  +        +    V+ 
Sbjct: 317 GVHGIAKDITERIQREEALEFFTSHDSLTHLVNRSAMEQRLQQL---QENKSDAAIFVLF 373

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG  +GD+VL+   +R+ +++  P++L R  G+ F  ++   +   ++
Sbjct: 374 IDLDGFKPINDSLGHYLGDEVLIETAQRLQQVVSEPNLLCRFGGDEFVAVIQDMSAVEQV 433

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +      P  + E E++++A+IG ++         E+ + A++AMY AK RGGN
Sbjct: 434 NALCAEVLAVFEQPFRIGEVEVSLSAAIGVSANDIEFKHPMELTQRADVAMYEAKKRGGN 493

Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            V  +  +       +V ++  +  A+   +  L Y PI+     ++ G EALI+W HP 
Sbjct: 494 SVYWYSANLDEGLGYKVALRTKIQEALAQEQFELFYQPIMTDK-GQVAGAEALIRWQHPT 552

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S ++F+ +AE    I  I+ ++L++  RD+   +         + +N +       
Sbjct: 553 KGYVSPADFIPVAERTGQIIPISEWVLKQACRDLQQLKLYGIK---SVSVNFSPIQFYRE 609

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +     +A++ +    P  I +  +E+V++ + +R   LL +LR +G+ + +DDFG+  +
Sbjct: 610 DFVSKTKAILEQFDIKPGEITVEITENVLVNDTQRIAELLQQLRDLGLDVAIDDFGSGFA 669

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P + +K + S +    E     AI   I+ M   I    +A+ +  E +   
Sbjct: 670 SLRYLNMLPVNKLKIDRSFIENIHENSHNAAITCGILSMVAGIGIETVAEGVEKEEECAY 729

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           L   GC ++Q    + P     +LK  + + 
Sbjct: 730 LVEHGCHFMQGFLFSKPKPLGELLKWAERQQ 760


>gi|222080887|ref|YP_002540250.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221725566|gb|ACM28655.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 766

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 137/496 (27%), Positives = 236/496 (47%), Gaps = 32/496 (6%)

Query: 496 IIRIRPMSNSNGDILRYIGIAN--------DITE--------------QKKSLEGILCNA 533
             R   +S+++G I   + + +        D +E              + ++   I   A
Sbjct: 271 QCRCLAISDADGQIEGILALYSSEGSRFQPDFSEFVSIAVHMAGIAISRHRAEARIGFLA 330

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+ NR     +LT  +  +         +  +D+D +K +ND LG +VGD +L 
Sbjct: 331 DHDPLTGMANRALLDRKLTFAMQTAD-STRSEVALAFLDLDNFKLVNDSLGHSVGDQLLK 389

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  RI EL      LAR+ G+ F IIL  + +     D   A+R+++  PI L + E+ 
Sbjct: 390 IVASRISELTSDQGSLARIGGDEFVIILE-QMDLESCLDRLSAIREAVTRPIVLNDIELR 448

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DL 711
           VT SIG AS+ S   T+ E+L +A++AMY AK  G + +  F  +     R  +    +L
Sbjct: 449 VTCSIGVASYPSHGSTAGELLASADMAMYRAKELGRDGIALFTSAMTAIVRKKLSRTDEL 508

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   E  L Y P + +    IV  EALI+W+H   G +   +F+ +AEE  +I  I 
Sbjct: 509 RQALLRDEFVLHYQPQVDVRTGRIVAAEALIRWNHSSEGLVYPGDFIALAEETSLIVPIG 568

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L+   R   +W+DQ    PI I +N++++   +  L E +   +S++   P  ++L 
Sbjct: 569 EWVLKTACRQAKAWQDQ-GREPIRISVNVSARQFQEKRLIETVATALSESGLDPIWLELE 627

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES++M +   S   +  L  +G+ L +DDFGT  S LS L   P   +K + S +   
Sbjct: 628 ITESLIMKDLAGSIARMQELETLGVKLAVDDFGTGYSSLSALKRFPLSRLKIDRSFIADI 687

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                 +AI  +II +A+ +   +IA+ +  E   + L   GC+ IQ    + P+     
Sbjct: 688 PHDADDMAITAAIISLAQKLGLEVIAEGVETEEQARFLVESGCNEIQGYLFSRPVEEAQF 747

Query: 950 LKLLKERF---PLVKN 962
            ++L+      PL++ 
Sbjct: 748 NRMLENNSGMHPLLRT 763



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 25/173 (14%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTIL 468
            +    D ++  D+    +     I    GL+    + G       ++  +      T +
Sbjct: 56  MINQIPDYIYAKDLEGRFLFANQAIVANNGLSHLKDLVGRTD--FDFL-PHHIAQIATDV 112

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +  V            +        W++I   P+ +++G I+  +G++ D+T QK +   
Sbjct: 113 ERSVAETGQPHFGGEELAFRGGGERWLMITRVPLRDASGTIVGVVGVSRDVTAQKSAERR 172

Query: 529 ILCNAFQDNLTG----------IPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +   +      G          +PN   FL+ L   L  +     +    + I
Sbjct: 173 MRAQS------GLLEMIARGMPLPN---FLEEL--ALMTAGFAKGVHAAFLTI 214


>gi|229009972|ref|ZP_04167189.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
 gi|228751310|gb|EEM01119.1| Sensory box/GGDEF [Bacillus mycoides DSM 2048]
          Length = 689

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 239/549 (43%), Gaps = 16/549 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     +         +I+      F+ 
Sbjct: 149 FKSLLEYNNDSIISVDSIGRITYANPATYEIFGYRYEELKDQFIC--QFINKEYEKTFQI 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I  + +  R  ++  + +    +    ++ +R  P+   N +I+    +  D+T Q  + 
Sbjct: 207 IFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIPII-VNSEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L   L  +         ++ ID+D++  IND  G  
Sbjct: 265 MKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE-----FALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  + +L      L R   ++F +++ +      + + A  + K I+    
Sbjct: 320 EGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLIENIT-REYVEEVAQTILKKISGHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG        +    + +  + A+  AK +G  +   +       R  R
Sbjct: 379 IEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAALEKAKEKGKGYYHFYCSGLDCEREQR 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E  L Y P I +   ++  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 439 FIIENQLHRAIEKNEFSLYYQPQINIETGKMASMEALIRWENKELGFVSPNQFIPLAERT 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  ++ +++ ++   I  W ++     + I +NI+++      L E +   ++K    
Sbjct: 499 GFIIKLDEWVVHQVCEQIREWLNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LSYL   P DT+K +
Sbjct: 558 PHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKID 616

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S M G    E+   I  +II +A  +   +IA+ +     I+ L       +Q      
Sbjct: 617 RSFMEGIYKDERDTNITAAIIHLAHTLGLNVIAEGVEKAEQIQFLKEKNVKIVQGYFYNR 676

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 677 PLSIYDVEN 685


>gi|330809204|ref|YP_004353666.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377312|gb|AEA68662.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 790

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 227/437 (51%), Gaps = 6/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              E +   A+ D LT +PNR  F   L+  +  ++     +  V+ +D+D++K++ND L
Sbjct: 348 AYAENVEYLAYHDGLTALPNRSLFSKLLSRSIGEASRYHR-QLAVLFLDLDRFKQVNDTL 406

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L+  D +ARL G+ F I+L   ++   +A  A  +  +IA 
Sbjct: 407 GHDAGDQLLKEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATTAQKILGAIAR 466

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
           P NL  +E  VTAS+G + +    +    + KNA++AMY AK RG N+ + +  ++++  
Sbjct: 467 PFNLQGQEFRVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQRGKNNFQFYSAKLNADS 526

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ ++  L  A+E  E  L Y     +    I G+EAL++W+HP  G ++  +F+ +A
Sbjct: 527 LERLTLELSLRHALERHEFQLHYQAKRDIGSGRITGMEALLRWNHPDLGIVAPMQFIPVA 586

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  ++L+   +  ++W+ Q   P + + +N+ ++   D  L   +  ++++T
Sbjct: 587 EETGLIVPIGKWVLKTACQQNMAWQQQGL-PHLGVAVNLTARQFADENLLTDLAEILAET 645

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 ++L  +ES++M + +R+  +L  L+ + + + +DDFG   S LS L   P D +
Sbjct: 646 GMDARLLELEIAESLLMQDVKRALSVLTGLKHLRVRIAIDDFGIGYSSLSALEQFPLDVI 705

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +  ++   +  A+  +II M + +  T++A+ +  +     L    CD  Q  +
Sbjct: 706 KIDRSCICDTSSVSEDKALTEAIIAMGRTLSLTVVAQGVETKEQADFLRDNACDEFQGFY 765

Query: 940 VASPLGFNSILKLLKER 956
              P+  +    LL+ +
Sbjct: 766 FNKPVPADQFKVLLQAQ 782


>gi|239502470|ref|ZP_04661780.1| MorA [Acinetobacter baumannii AB900]
 gi|260556740|ref|ZP_05828958.1| signal transduction protein [Acinetobacter baumannii ATCC 19606]
 gi|260409999|gb|EEX03299.1| signal transduction protein [Acinetobacter baumannii ATCC 19606]
          Length = 949

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
                  + I+   L   +      +        + ++S+ II L       R+      
Sbjct: 95  CLTSGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 149

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
             +       +   +  +       +      ++    T    Y   + Y++   L+   
Sbjct: 150 --YLLFIPSTVPLIIGQFTHSQINQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 204

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
                        +     +      L   L   V        Q         Q +    
Sbjct: 205 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 257

Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449
                  ER        + A   +G   WDWDI + ++       T       + + P+ 
Sbjct: 258 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 312

Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506
            ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +S     
Sbjct: 313 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 372

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
              LR +G+  DI ++KK  E +  +A
Sbjct: 373 NKALRMVGMTRDIHQEKKDQEHLRLSA 399


>gi|254517294|ref|ZP_05129351.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma
            proteobacterium NOR5-3]
 gi|219674132|gb|EED30501.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor(s) [gamma
            proteobacterium NOR5-3]
          Length = 1521

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/577 (23%), Positives = 251/577 (43%), Gaps = 16/577 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V Q +  T      +  + E   L +   S    W  D   +    TP +  + G ++  
Sbjct: 945  VYQDLSITMQLRSALKEEQELFHLLLDWTSNTEYW-TDADGNISYITPAVREMTGYSAEE 1003

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMS 503
                       I  + R ++   +       + +       +R  D    W+  R R M 
Sbjct: 1004 FIETPGLLSGIIAESSRADWLRHVSPEESPAKDQWKTITLPIRKRDGSQVWIEHRFRIMY 1063

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +S+  IL Y G   D+ E  K  +     AF+D LT +PNR+    +L     +S     
Sbjct: 1064 SSDSKILGYRGTMRDVDEVHKLEKEARDLAFKDPLTNLPNRRMIAVKLDEARTVSNRTYQ 1123

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                ++++DID +K++ND  G  VGD++LV +  R+ + L+  D +AR+ G+ F +IL +
Sbjct: 1124 Y-GALVMLDIDHFKRVNDTDGHGVGDELLVEVAARLRQRLRSFDTVARVGGDEFLMILNA 1182

Query: 624  E-NNSLKIADFAIAMRKSIAMPINLLER------EITVTASIGFASWTSSKITSSEMLKN 676
               + ++ +  A  +   I   I+  +          VT S G A +   K T+  +LK 
Sbjct: 1183 LGQDQMEASLTASRICNEIRADISSEQNLTGASTSHHVTGSFGVALFVGDKETAETLLKQ 1242

Query: 677  AELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEE 734
            A++A+Y AK  G N V+ F           +  +  L  A E+ +L + Y         +
Sbjct: 1243 ADMALYSAKDNGRNRVKLFDPKMQADVDRRMASETALLGAQESGDLIMYYQLQTDAQ-GQ 1301

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
               +EAL++W  P     S  EFM + E+  ++  I  +++      +  W    ++  +
Sbjct: 1302 AKAVEALLRWKKPDGSMASPMEFMDVLEDQPLVSNIGHWVINTCFAQLKQWEADPDLHNL 1361

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             I INI++  L+++   + +  LI      P RI L  +E+ ++   +R   L+ +L   
Sbjct: 1362 DISINISAGYLVNDSFTKELGQLIESNSVDPRRIILELTENALLVESDRISTLMYKLSAR 1421

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
            G   +LDDFGT  S LS+L  +P   +K + S + G  +     +I++SI+ + + +   
Sbjct: 1422 GFRFSLDDFGTGFSSLSHLRDLPLAQLKIDQSFVAGLPDDLNCQSIVKSIVAVGQALNLE 1481

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            ++A+ +        L  +GCD  Q    A P+  + I
Sbjct: 1482 VVAEGVETRAQCDFLQSLGCDLYQGYLFAHPVPADKI 1518


>gi|192288805|ref|YP_001989410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192282554|gb|ACE98934.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 840

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 135/570 (23%), Positives = 258/570 (45%), Gaps = 14/570 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q   A     Q   +  E   L         W   +   R   +P++  +LGL   + 
Sbjct: 264 ITQLAAARTLLDQRTGALEEAHRL----GRIGTWTHRLDTGRTVWSPELYQLLGLEPDAF 319

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                   PY   +D      I    +         + R+   D     + I  +    S
Sbjct: 320 EPTYEGTEPYFLDDDAVRLLKIQKRVLRTSTTE-ATDIRILHTDGAPRDLAIICKAEI-S 377

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG ++  IG A D+T++K++   +   A+ D LTG+ NR  +  +L  + +    +    
Sbjct: 378 NGRVIGLIGTAQDVTDRKEAERRLEQLAYTDPLTGLANRALYKRKLADLFENPMAEHGQN 437

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-E 624
             + +ID+D++K++ND LG + GD +L+ +   + + L     +AR+ G+ F ++  S  
Sbjct: 438 -ALYLIDLDRFKEVNDSLGHSTGDSLLIHVAGVLRQELGPQAFIARIGGDEFAVLTNSPN 496

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +       A  +   +++P+ L E E  + A+IG A       T+ +  +NA+LA+Y A
Sbjct: 497 TSVEATTALADRLIAKLSVPVELAEGEACIGATIGIAILPEHGATAEKASRNADLALYMA 556

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G    + F    +     ++ +   L  AV++  L   Y P I L    ++G EAL+
Sbjct: 557 KEAGRGRAQLFEPMYAEAVDQKLDLGRRLRHAVDSGGLNTHYQPQIDLKTGRVIGFEALL 616

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS +EF+ IAE   +I  +  ++L    + +  W D    P   I +N++ 
Sbjct: 617 RWSHPERGPISPAEFIPIAETTGLIVDLGHWVLRDACKQMRGWLDAGL-PARTISVNVSP 675

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLD 861
             + + +  + +  +++ T   P  + L  +E++ + + ++     L  L K+GI L LD
Sbjct: 676 AQIWNGDFEKVVATVLADTGLPPELLCLELTENLFVDHTKQKVSTTLAALSKLGIQLALD 735

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S L YL  +PF+ +K + + + G     ++  +L  II +A  +  +++A+   
Sbjct: 736 DFGSGYSSLGYLTRLPFNRLKIDRTFVEGIATVPEKCKLLGGIIALAHGLGMSVVAEGAE 795

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              ++  LT   CD++Q    + P+  +  
Sbjct: 796 LAAEVDLLTAFDCDFVQGYVFSRPVAADQA 825



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 20/148 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATI 437
           F +++         + +    +R +  V  + D  W+       +           + T+
Sbjct: 131 FGIVRDATPETSALRQLAVSEQRLADFVSTASDWCWESGPDHRLLPYPKSLDGNAALQTV 190

Query: 438 L--GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
              G A   +           +H +D +  R               + +     D     
Sbjct: 191 ASGGKARWELAYAPDEEGSMALHRDDMEAHR-----------PFRDFIYTSIGNDGSRII 239

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +    +P+   +G  L Y G A+DIT+ 
Sbjct: 240 ISTSGKPIFADDGTFLGYRGTASDITQL 267



 Score = 38.0 bits (87), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 12/123 (9%)

Query: 419 WD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---Y 474
           W+ +         + +  ++    + +    +       H  D      IL         
Sbjct: 37  WESYSAAATDFWMSAEFTSL--YDAETPDDSVPLAPARDH--DLTESHAILQDHYAACWT 92

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT----EQKKSLEGIL 530
                  E ++   D +    ++   P  ++NG + R  GI  D T      ++      
Sbjct: 93  EGRPFAVETKLIKPDGRLLDCVVHGEPEFDANGQVQRVFGIVRDATPETSALRQLAVSEQ 152

Query: 531 CNA 533
             A
Sbjct: 153 RLA 155


>gi|332140970|ref|YP_004426708.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550992|gb|AEA97710.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 573

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/543 (22%), Positives = 235/543 (43%), Gaps = 13/543 (2%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRL 479
           +D  R+ +        + G +     G        I  N  RD        ++ +     
Sbjct: 37  YDKHRNVIYWNKSSEDMYGYSKDEALGQKLE--DLIIPNFMRDEVVKFHQRWIEFDEAIP 94

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             E  ++  D Q   +      +   +     Y  +  D++EQ +    +   A  D LT
Sbjct: 95  SNELVLKKKDGQPIHVFSSHVMLKQGSDSPEMY-CVDIDLSEQHEIRLELERMASTDLLT 153

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PNR+     L +I++   T  N    +  ID+D +K+IND LG   GD++L ++ +R+
Sbjct: 154 DLPNRRVLEQTLISIIEDV-THSNSGFALFFIDLDMFKEINDTLGHTWGDELLKAVAKRL 212

Query: 600 GELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
              +     +LAR  G+ F  +  +  + ++  + A  +         L    + +T+SI
Sbjct: 213 VSCIDSANGMLARFGGDEFVYVANNITDEIQCEEIAKKLTDCFKKSFELSTESVHITSSI 272

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVE 716
           G + +        ++LK+A+ AMY AK  G N    F    S     +  I   L  +++
Sbjct: 273 GISIFPRDGDGIDDLLKHADAAMYQAKAEGRNRYHFFTKTLSQRLRQQRSIAARLRESLK 332

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDH-PKWGNISSSEFMLIAEELCMIKAINLFML 775
             E  L++ P I +   +    EAL++W    +   +  + F+ IAE   +I  I  ++L
Sbjct: 333 KDEFELLFQPQIDVKTGKFTSCEALLRWRPLDEESAVPPNIFIPIAERSELIADIGRWVL 392

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E+  +    W+ +     + I IN++ K+L  +   E + A  S    SP  I L  +E+
Sbjct: 393 EKTCQQSKKWKQKGIG--VRIDINVSGKELEKSSFFERLTACRSHYGLSPEDIGLELTEN 450

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
           V++ +       L   R +G+ +++DDFGT  S LSYL   P   +K + S + G+ E  
Sbjct: 451 VLIKSDNAILENLRAQRDLGVEISIDDFGTGYSSLSYLKQFPVSHLKIDRSFLKGAPENA 510

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              A++ +I+ +   ++  I+ + +  +        +  +++Q    + P+   +I  LL
Sbjct: 511 YDSALMEAIVNVGHKLDLKIVVEGVETQSQSDYCKSLNVEFVQGFLYSRPISAEAIEALL 570

Query: 954 KER 956
           +++
Sbjct: 571 EKQ 573


>gi|289678768|ref|ZP_06499658.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 579

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/580 (21%), Positives = 229/580 (39%), Gaps = 18/580 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++   +     +        R       S D +   D     ++       I G  S   
Sbjct: 1   MVIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAELIFGHRSEDA 60

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPM 502
            G   +    I    R      L          +            D     + + +   
Sbjct: 61  MGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAIHRDGHTLPIELSLS-Q 117

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G+      I  DIT++ ++ + +   A  D+LTG+ NR +   R+         D 
Sbjct: 118 WTYAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC-----DA 171

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +   +++ID+D +K +ND LG A GD VL   + R+ E +    +++RL G+ F + L 
Sbjct: 172 QMSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLS 231

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +  K     +A+   I  PI   +  I + ASIG +  + +     +ML NA+LA+Y
Sbjct: 232 DTADPEKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLGNADLALY 291

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G + V +F     ++      +   +  A  N E  L Y P +RL D  I G EA
Sbjct: 292 QAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADGRITGAEA 351

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W+HP  G +S + F+   E   +   +  ++L         WR+        I +N+
Sbjct: 352 LIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAKWRNTGCEE-FRIGVNL 410

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +      +  E +++ +         ++L  +E++++ N +R    L  LR +G+ +  
Sbjct: 411 FAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRSLGVGIAF 470

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  + LS L   P   +K + S ++G   ++K   I+ +++ +A      + A+ I
Sbjct: 471 DDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNLQVTAEGI 530

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957
                   +    CD  Q      P+  +    + +    
Sbjct: 531 ETREQESLMRHYVCDEGQGYLYGRPMPAHDFTERYISSHN 570


>gi|254239213|ref|ZP_04932536.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719]
 gi|126171144|gb|EAZ56655.1| hypothetical protein PACG_05404 [Pseudomonas aeruginosa C3719]
          Length = 823

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 218 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 277

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 278 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 336

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+    G+I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 337 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 395

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 396 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 454

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 455 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 514

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 515 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 574

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 575 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 634

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 635 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 694

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 695 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 754

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I  +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 755 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 800


>gi|332875287|ref|ZP_08443119.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|323518771|gb|ADX93152.1| signal transduction protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332736544|gb|EGJ67539.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 949

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 95/327 (29%), Gaps = 40/327 (12%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
                  + I+   L   +      +        + ++S+ II L       R+      
Sbjct: 95  CLTSGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRYF----- 149

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
             +       +   +  +       +      ++    T    Y   + Y++   L+   
Sbjct: 150 --YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKISQLL--- 204

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
                        +     +      L   L   V        Q         Q +    
Sbjct: 205 -------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQKVRERT 257

Query: 405 -------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI- 449
                  ER        + A   +G   WDWDI + ++       T       + + P+ 
Sbjct: 258 YDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQTQNTPLH 312

Query: 450 -RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--N 506
            ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +S     
Sbjct: 313 LKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVISRDPKT 372

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
              LR +G+  DI ++KK  E +  +A
Sbjct: 373 NKALRMVGMTRDIHQEKKDQEHLRLSA 399


>gi|302189446|ref|ZP_07266119.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 732

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 127/587 (21%), Positives = 230/587 (39%), Gaps = 18/587 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++   +           +  R       S D +   D      +       I 
Sbjct: 147 VLQDLAIMVIEKMELRRLELENEDNHTRFMNITSTSPDAIICSDSKNRITSWNNSAELIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  +    G   +    I    R      L          +            D     +
Sbjct: 207 GHRAEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPTSIIGKSINLTAIHRDGHTIPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +       G+      I  DIT++ ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  L   +++ID+D +K +ND LG A GD VL   + R+ E +    +++RL G+
Sbjct: 323 -----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +  K     +A+   I  PI   +  I + ASIG +    S     +ML 
Sbjct: 378 EFVVFLSDTADPDKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRCGSDYDEEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCDE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ +++ +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVVRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957
            + A+ I        +    CD  Q      P+  ++   + +    
Sbjct: 677 QVTAEGIETPEQESLMRHYVCDEGQGYLYGRPMPAHAFTERYISSHN 723


>gi|187920151|ref|YP_001889182.1| RNase II stability modulator [Burkholderia phytofirmans PsJN]
 gi|187718589|gb|ACD19812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 689

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/542 (24%), Positives = 247/542 (45%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+   ++ G    W  ++   D       +  F   R    + 
Sbjct: 151 DRHGRIQRFNRLAEELTGVKEENIVGRN-VWALFMSTEDGAASSQNIAGFF-NRGVSYEV 208

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E RV+    +  ++       S S  D    I    DITE++ + E +   A  D+LTG+
Sbjct: 209 ERRVKTVHGERLFLFRNKFVQSGSGIDEQFLICSGTDITEERLAQERLTQLANTDSLTGL 268

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  D++   ++ +A        V+ +D+D +KK+ND  G   GD ++  ++  I E
Sbjct: 269 ANRNAIQDKIRAAIEDAA--PGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSSAISE 326

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++  + ++   A  + + +  P  L   E+    SIG A
Sbjct: 327 CLNEGDTLARLGGDEF-IVLAAKGTAHELETTAQRILERMRTPFALGLVEVYTGCSIGIA 385

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +     +   ++++A+ AMY AK  G      F     R   + + +  +L   +E  +
Sbjct: 386 RYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRRVAEYMWLDTNLRRGLEEGQ 445

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G+EAL++W+ P+ G I  SEF+  AEE  +I  +  +++E   
Sbjct: 446 LTLHYQPKLSLATGVVQGVEALVRWNSPERGQIMPSEFIRYAEESGLIGVLGRWVMET-- 503

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               + + +A+   + I IN++++ L+D  +       +      P  I L  +ES ++ 
Sbjct: 504 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQNARLDPCLIDLELTESCLIE 563

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +   +  L+ + R++G  + LDDFGT  S LS LG IP D +K + S +          A
Sbjct: 564 DETAAIDLIRQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQA 623

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ +   ++A+ I  E +   +  +G DY+Q       +      + L++R 
Sbjct: 624 LVRSMVAVAQELNFKVVAEGIETESEEVFMKGLGVDYVQGFLYGQAMPAAEFERWLQDRQ 683

Query: 958 PL 959
            L
Sbjct: 684 KL 685


>gi|330985324|gb|EGH83427.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 584

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 135 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 193

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 194 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 252

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 253 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 312

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 313 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 372

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 373 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 431

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 432 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 491

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 492 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 551

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 552 LGYPLPAEQFLDEIRA 567


>gi|294497851|ref|YP_003561551.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
 gi|294347788|gb|ADE68117.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium QM
           B1551]
          Length = 843

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 220/451 (48%), Gaps = 10/451 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +  ++    D  + KKS E    +A+ D LTG+PNR+ F ++L   L  S        
Sbjct: 392 NHLSHFLKTYVD--DLKKSQEESEYHAYHDFLTGLPNRRYFKEQLNRRLIESKEKSIRHV 449

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISEN 625
            V+ +DID++K IND LG + GD ++  +  RI E L      L R  G+ F I+     
Sbjct: 450 AVLFMDIDRFKDINDTLGHSKGDQLIQLIANRIKECLPSANSFLTRQGGDEFVILFSDFT 509

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++      +   +  P  +   E+ V+ S G + +         ++  A++AMY +K
Sbjct: 510 -PEEVKGITEKIMAYVQQPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASK 568

Query: 686 HRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +GG+ V  +    +  ++++V I+  L  A++  ++ + Y P I      I G+EAL++
Sbjct: 569 RQGGSKVSIYHDSLNKKQAEKVHIETRLRKAIQKGDIDVYYQPKIEAKRNVITGVEALVR 628

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+  + G +S   F+ IAEE  +I+ +   ++++    +  W    +   + + +N + +
Sbjct: 629 WNDAELGFVSPEAFIPIAEEAGLIQYLWEVVMKKACSQVSEWNK-VSDEKMTLAVNFSPR 687

Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              D   L   ++  +S   + P+  ++  +ES ++ N E +   L  L+K GIS+++DD
Sbjct: 688 QFQDPVVLVNEIKHFLSLHRFDPAWFEMEITESTLLMNAEETIKALHLLKKYGISISIDD 747

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P D +K + S +    E      I ++II ++++++  +IA+ +  
Sbjct: 748 FGTGYSSLSYLKKLPIDCLKIDRSFIQDIQEDYSNSEIAQAIISLSQSLKLEVIAEGVEE 807

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           E     L + GCD++Q    + PL      +
Sbjct: 808 EYQKAFLMKNGCDHMQGYLFSKPLAAEDFEE 838


>gi|159186276|ref|NP_355973.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159141410|gb|AAK88758.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 724

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 149/583 (25%), Positives = 266/583 (45%), Gaps = 30/583 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI------VWDWDIVRDRVTTTPDIATI 437
                H+L     +  I    E    A+            V++  +    V  +P +A  
Sbjct: 150 LQAQAHILEMIVAAARIEDFLEEFVKAIENLATGLACAVRVFEAAVGEPSVYVSPALAQQ 209

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            GL +  +   + +     H  +   F   + +  G   G +      R  D      I 
Sbjct: 210 AGLTA--LISNVSDPESLAHSGEDTAFSFDIPASEGKAHGFVWCRLAGRKPDEALVEFI- 266

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                    G   R  G+A D   +K++ E I   A  D LT +PNR+    RL  IL  
Sbjct: 267 ---------GAAARMAGLAID---RKRAAEHIAFLADHDMLTRLPNRRFLDTRLPEILAA 314

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +A  +  R  +  +D+D +K+IND LG ++GD +L     RI   L   D++ R+ G+ F
Sbjct: 315 AAKANR-RVGIGFLDLDNFKQINDTLGHSIGDALLSKTAERIAASLGQNDLVLRVGGDEF 373

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            IIL    +   +      +R +++ P+ +   +I VT SIG A +     T++E++  A
Sbjct: 374 VIILEEHKD--DVEKHLQRIRAAVSQPLRIRNYDIKVTCSIGMAFFPEHGKTTAEIVAAA 431

Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY  KH G + + +F  +       +    E++  AVE  E  L + P + L +  I
Sbjct: 432 DLAMYEVKHNGRDSIATFTPNMADDLRKKFTRIEEMRKAVERDEFVLHFQPQVDLANGRI 491

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL++W HP  G +   EF+ +AEE  +I  +   +L++  R   +W       P+ 
Sbjct: 492 SGVEALVRWQHPTEGLLGPVEFIGLAEETGLIVELGANILKKACRQAQAWVAAGL-SPVK 550

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +NI+ +      L + +++++ +T  +PS +++  +E++++ + E S  ++  ++++G
Sbjct: 551 MAVNISPRQF-QGGLVQQIRSVLKETGLAPSLLEIEITETLIIQDVETSVRIMHAIKQMG 609

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913
           +SL LDDFG   S L  L   P   +K + S +T   E  K  AI+  +I +A ++   +
Sbjct: 610 VSLALDDFGIGYSCLGMLKTFPLSCMKIDRSFLTHLPEKTKDSAIVTIMIQLAGSLGIDV 669

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           IA+ +        L   GC Y Q  + + PL  ++I   L  R
Sbjct: 670 IAEGVETAEQANFLRTAGCPYGQGYYFSRPLPADAIEATLANR 712



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTT---------PDIATILGLASGSMHGPIRNWLPYIH 457
               +    D ++  D+    +              +  ++GL    +HG          
Sbjct: 29  LEAMIDHVPDFIYAKDLEGRFLFANRAIVNENGFESVEELIGLTDYDIHGEAARHAGI-- 86

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +                   L YE R    D    W+++   P+ + +G+I+  +G + 
Sbjct: 87  PDTEARVMRT-------GEPDLGYEERAMRGD-VDRWLMMSRVPLKDKSGEIIGVVGASR 138

Query: 518 DITEQKKSLEGILCNAF 534
           DIT++K S   +   A 
Sbjct: 139 DITQKKASERLLQAQAH 155


>gi|330888919|gb|EGH21580.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 732

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 128/580 (22%), Positives = 231/580 (39%), Gaps = 17/580 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++   +     +        R       S D +   D     ++       I 
Sbjct: 147 VLQDLAVIVIERMELRRLALENEDSHARFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  S    G   +    I    R      L          +            D     +
Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVASGGPTFIIGKSINLTAIHRDGHTIPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +   + + G       I  D+T++ ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLSQWTYAGGPQFG--AIIRDVTQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  L   +++ID+D +K +ND LG A GD VL   ++R+ E +    ++ARL G+
Sbjct: 323 -----DAQLPAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSQRLREHVPACHMVARLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +        +A+   I  PI   +  I + ASIG +  + S     +ML 
Sbjct: 378 EFVVFLSDTADPDNATRLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGSDYDEEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGWDE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ ++I +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIIEAVIRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + A+ I        +    CD  Q      P+  +   +
Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHEFTE 716


>gi|119511103|ref|ZP_01630222.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Nodularia
           spumigena CCY9414]
 gi|119464274|gb|EAW45192.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Nodularia
           spumigena CCY9414]
          Length = 868

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 227/438 (51%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++  E I   A  D+LTG+PNR  F + L   L  +  +      VM +D+D +K IN
Sbjct: 431 QRQQVSEKIRFQALHDHLTGLPNRLLFNELLEKALPNAIRNGE-SLAVMFLDLDLFKLIN 489

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  + +R+   L+  D +AR  G+ F I+L   N   +++  A  +  +
Sbjct: 490 DTLGHTLGDRLLKEVAQRLKGCLRGGDTVARWGGDEFTILLPRMNYLEEVSLVAQRILGA 549

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +     L   E+ V+ S+G A        +  ++++A+ A+Y+AK +G N+   +    +
Sbjct: 550 LDNVFYLDGHELYVSGSLGIAILDEHSADAETLIQHADTALYYAKDQGRNNYHFYSKTLN 609

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   + + + + L  A+E  EL + Y P + +   +I G+EAL++W HP+ G ++ + F+
Sbjct: 610 TKNPELLTLDKSLRYALERKELVVYYQPRVNIKTRKITGMEALLRWQHPEMGLVAPNVFI 669

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  ++L        +W+     PP+ I +N++ K     +L + +  ++
Sbjct: 670 PIAEESGLIIPIGEWVLRTACMQNKAWQQAGL-PPLTIAVNLSPKQFRKPQLVDTVAKIL 728

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T   P  ++L  +E+  + + + +R +L  L ++G++L++DDFGT  S LS L  +PF
Sbjct: 729 AQTDLEPKFLELEITETTAIEDLDFTRTVLQDLTQMGVNLSIDDFGTGHSSLSRLQLLPF 788

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +   T+      I+++I+ + +++   + A+ +  + ++  L  + C+ +Q
Sbjct: 789 HNLKIDKYFIQELTKDEKVAHIVQAIVTLGRSLGLRLTAEGVEKQEELDFLASINCEDVQ 848

Query: 937 DSHVASPLGFNSILKLLK 954
                  L      ++L+
Sbjct: 849 GFFFYKALPSEKATEILQ 866


>gi|23098814|ref|NP_692280.1| truncated nitrogen fixation positive activator [Oceanobacillus
           iheyensis HTE831]
 gi|22777041|dbj|BAC13315.1| nitrogen fixation positive activator (partial) [Oceanobacillus
           iheyensis HTE831]
          Length = 539

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/549 (24%), Positives = 254/549 (46%), Gaps = 29/549 (5%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV---GYRRG 477
            D+  + +         L      + G        I        ++     +     ++ 
Sbjct: 5   IDVNGNLIYANDSFCKRLNYTEEDIFGKP---FNRI-------LKSPFPLHIVREQNKKA 54

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             + E +++  D+   W    + P  + +G+  + I    DIT +K   E I   AF D 
Sbjct: 55  VWKEEIQIQTKDDTTCWFEASMVPYYDQDGNPDKTITTYYDITARKHYEEYIEGIAFTDY 114

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PN     ++L   +D    D N    ++ I +D++K+IN+  G  + D V+  +  
Sbjct: 115 LTKLPN----QNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRIADKVIRMVAE 170

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+       + L R  G+ F +I+  + N  +    A ++   + +P  + + +I++T S
Sbjct: 171 RLQNFQTKDNFLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVS 230

Query: 658 IGF-----ASWTSSKITSSEM---LKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MI 707
           IG      +++T+      E+   +K A  AM  AK +GGN          +      +I
Sbjct: 231 IGIRFPYKSAYTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYII 290

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A+   E  ++Y PII L   ++VG EAL++W++ + G +S  EF+   EE  MI
Sbjct: 291 DLELKEALAREEFSIMYQPIINLKSHKVVGAEALLRWNNRELGFVSPDEFIPKLEESGMI 350

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            ++  ++LE + R + SW+++  +    I +N++     D    + ++ +++ T+   S 
Sbjct: 351 ISVGKWILENVCRRMKSWQEKGLLMQ-RISVNVSPIQFKDKYFVQDVKEILNDTMLDASY 409

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ES ++ N E S L +  L+ +G+ +++DDFGT  S LSYL  +P DT+K + S 
Sbjct: 410 LEIEITESTIL-NLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSF 468

Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +         I  +II M KN+   IIA+ I  E  ++ L    C   Q    + P+  N
Sbjct: 469 IDDLDRDGEIITNTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPN 528

Query: 948 SILKLLKER 956
            I+ +L ++
Sbjct: 529 EIMTMLLQQ 537


>gi|91793351|ref|YP_563002.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715353|gb|ABE55279.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 855

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 140/609 (22%), Positives = 268/609 (44%), Gaps = 13/609 (2%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
           + + +     + +     +  ++    +IGF+ I + +      +      ER S     
Sbjct: 251 MQLKMLGIEHDVLWLNLRLSAVMENNHVIGFSAIIYNITASLIDR---QKIERYSSIFNH 307

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +   +   D     V   P    + GL      G     L  I        R  L  ++ 
Sbjct: 308 TSHGILVLDHNGKVVEVNPGFLALTGLPIEPFLGRDFTKLNSIKFT--KEQRASLRLYIK 365

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             +   Q E      +      ++ +  + +   ++ + +    DI++ K   + +L   
Sbjct: 366 AGK-PWQGEVVHIHLNGISRISLLSLFVLPSQMVELQQLVCFFTDISDIKSYQDQLLYLT 424

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D  TG+ NR  F+  L   L   A D   +  V  +D+D +K IND  G A+GD+ + 
Sbjct: 425 RHDKNTGLYNRLHFVTLLDYELKRCARDGR-QLAVCFLDVDNFKDINDTFGHAIGDEFIA 483

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L   +   L+  D++AR  G+ F I    E            +R+ ++      +  I 
Sbjct: 484 LLATNLKNKLRQTDVIARFGGDEFIIFFEIEAEQQSAEQSITNIRQLVSGEFITSQAVIN 543

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711
            + S+G A + +  +TS+E++KNA+ AMYHAK +G      +R +        I   ED+
Sbjct: 544 ASVSLGIAIYPNDGLTSAELIKNADTAMYHAKKQGVGSFAYYRQALTEQVVRRISIVEDI 603

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+  ++  + Y P I ++ EEI G EALI+W HP  G I+  +F+ +AEEL +I  ++
Sbjct: 604 KQALLLNQFEMWYQPQIDVITEEISGAEALIRWQHPTKGLINPIDFIPLAEELGLIAEVD 663

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++  +   +  W ++       + +N+++K    ++  +     IS+    PS I++ 
Sbjct: 664 RWVMNSVFNQVFKWHEKKLFFG-RVALNVSTKTFKQSKFRQHYAEAISQYQIDPSHIEIE 722

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E     + E     L  L+ +G  + +DDFGT  S LS L  IP + +K + S +   
Sbjct: 723 ITEGAF-SDEEDISPFLQELQSLGYGIAIDDFGTGYSSLSRLRSIPVNRLKIDRSFIDPI 781

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T+     A+++SII +A +++  +IA+ I  +  +  L  +GC+++Q  +++ PL     
Sbjct: 782 TDSLAAKALVKSIINLAHSLDLCVIAEGIETQQHLTILKELGCNHMQGYYISRPLPVALF 841

Query: 950 LKLLKERFP 958
              ++   P
Sbjct: 842 EMFVQSYCP 850


>gi|169795276|ref|YP_001713069.1| hypothetical protein ABAYE1139 [Acinetobacter baumannii AYE]
 gi|184158859|ref|YP_001847198.1| signal transduction protein [Acinetobacter baumannii ACICU]
 gi|215482809|ref|YP_002325012.1| MorA [Acinetobacter baumannii AB307-0294]
 gi|301510424|ref|ZP_07235661.1| MorA [Acinetobacter baumannii AB058]
 gi|332850383|ref|ZP_08432703.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332871822|ref|ZP_08440245.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169148203|emb|CAM86066.1| conserved hypothetical protein; putative membrane protein with
           diguanylate cyclase (GGDEF) domain [Acinetobacter
           baumannii AYE]
 gi|183210453|gb|ACC57851.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Acinetobacter baumannii
           ACICU]
 gi|193077878|gb|ABO12759.2| sensory box protein [Acinetobacter baumannii ATCC 17978]
 gi|213986121|gb|ACJ56420.1| MorA [Acinetobacter baumannii AB307-0294]
 gi|332730654|gb|EGJ61965.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332731151|gb|EGJ62451.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 949

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+T+QK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 490 NAVKDEYNQIINYIGFARDLTDQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDRAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278
           +    +       + I+   L   +      +        + ++S+ II L       R+
Sbjct: 89  LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 148

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                   +       +   +  +       +      ++    T    Y   + Y++  
Sbjct: 149 F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 201

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L+                +     +      L   L   V        Q         Q
Sbjct: 202 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 251

Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +           ER        + A   +G   WDWDI + ++       T       +
Sbjct: 252 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 306

Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + P+  ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +
Sbjct: 307 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 366

Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533
           S        LR +G+  DI ++KK  E +  +A
Sbjct: 367 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 399


>gi|42779683|ref|NP_976930.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
 gi|42735600|gb|AAS39538.1| sensory box/GGDEF family protein [Bacillus cereus ATCC 10987]
          Length = 702

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/562 (22%), Positives = 249/562 (44%), Gaps = 29/562 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F++
Sbjct: 149 FKSLLEYNNDSIISIDSIGRITYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQS 206

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 207 IFKGSMQGKAKQIVSK-KYIHKEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNE 264

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T+L     +DN+   ++ ID+D++  IND  G  
Sbjct: 265 MRTEYLAYYDQLTGLMNRISCANKLNTLL-----NDNIEFALVFIDLDEFHLINDTFGHK 319

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +         L R   ++F +++ +     ++   A  + K I+    
Sbjct: 320 EGDKVLQKVTECLSSFEIAGMHLFREHDDQFVMLIENIT-KERVEGVAKNILKRISEHFV 378

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---------------NH 691
           + E ++ ++ASIG     +       + +  + A+  AK +G                 H
Sbjct: 379 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYALEKAKEKGKGHYH 438

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +   R  R +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G 
Sbjct: 439 FYCSGLDCEREQRFIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGF 498

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S ++F+ +AE    I  ++ +++  + R I  W ++     + I +NI+++      L 
Sbjct: 499 VSPNQFIPLAERTGFIIKLDEWVVNEVCRQIREWLNKGYEV-VPIAVNISARHFRSITLI 557

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +   + K       + +  +E  ++ + + S+ +L +L++  + + LDDFGT  S LS
Sbjct: 558 EMITRALHKYNVPAHLLAIEVTEGALI-HKDISKRVLLQLKEQNLKIHLDDFGTGYSSLS 616

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + S M G    E+   I  +II +A  +E  +IA+ +     I+ L  
Sbjct: 617 YLKTYPIDTLKIDRSFMEGIHVDERDTNITAAIIHLAHTLELNVIAEGVEKAEQIQFLKE 676

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
               ++Q  + + PL    +  
Sbjct: 677 KNVKFVQGYYYSRPLSKYDVEN 698


>gi|289679897|ref|ZP_06500787.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 609

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 146/553 (26%), Positives = 261/553 (47%), Gaps = 26/553 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V        + G ++  + G   +   
Sbjct: 67  AQIALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFTRLTGFSAQEVLGRTAHEVG 126

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +    R++    L      +      E   R        + I +  ++ +N    
Sbjct: 127 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 177

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI   K +   I   A+ D LTG+PNR   LDRL+  + L     NLR  ++ 
Sbjct: 178 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 236

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++     S   
Sbjct: 237 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDE 296

Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               + + A  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y AK
Sbjct: 297 VTQQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 356

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +   +E I G EAL++
Sbjct: 357 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 416

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L    +       Q  +P     + +NI+
Sbjct: 417 WQHPEYGLMAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVNIS 476

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L ++  E ++  ++      S +KL  +E +V+ N + + L +  L+ +G+S  +D
Sbjct: 477 PRQFLQHDFIERVERSLTLNQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 536

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +    +      I+R+I+ MA+++   +IA+ + 
Sbjct: 537 DFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVE 596

Query: 920 GEIDIKELTRMGC 932
               +  L ++GC
Sbjct: 597 TSEQLAFLEKVGC 609



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +R   R +  + +   +  LQ  +R +  +     +  R R   +  G  +R  G   D
Sbjct: 2   EERRRMRALYAAALETGQDCLQVTYRFQLKNGTSRLLEGRARIYRDEQGQPVRLSGTLMD 61

Query: 519 ITEQK-----KSLEGILCNAFQ---DNLT 539
           IT+Q      ++ E     AF    D++T
Sbjct: 62  ITQQCAQIALEASEEKFAKAFHSSPDSIT 90


>gi|209548399|ref|YP_002280316.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534155|gb|ACI54090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 765

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 133/440 (30%), Positives = 230/440 (52%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  + I   A  D+LTG+PNR    +RL  ILD +      + TV  ID+D +K IN
Sbjct: 326 ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRHTR-KVTVAYIDLDNFKDIN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D  G A GD+VL     R+   ++  D++ RL G+ F ++L+ +++    I      ++K
Sbjct: 385 DGRGHAAGDEVLKETAARMANSIRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQK 444

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  PI     EITVT+SIG A++     TS E+L NA+ AMY AK  G N ++      
Sbjct: 445 AINRPIPSEGGEITVTSSIGVAAFPFDGATSEELLANADRAMYRAKELGRNTLQHHDGGG 504

Query: 700 FRSDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + +++ L  A+   +L+L Y P + +    I G+EAL++W+HP  G +    F+
Sbjct: 505 TPVGMPLGEQEELHQAITGDQLFLQYQPQVDVATGRITGIEALVRWNHPAKGRVPPVNFI 564

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L++L    R    W+D     P+ I +N+++K   D +    +   +
Sbjct: 565 PLAEETGLIVPLGLWVLNEACRQARQWQDMGL-TPLTIAVNVSAKQFADPDFASHVAEAL 623

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +ESVVM + ER+  ++  LR +G+ L++DDFG+  S L+ L   PF
Sbjct: 624 ERHRLQARWLELEVTESVVMQDAERALAMMESLRALGVRLSIDDFGSGYSSLAALKTFPF 683

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+      +   AI  ++I +A+ ++ +++A+ +  +  +  L    C+  Q
Sbjct: 684 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRHAHCEEAQ 743

Query: 937 DSHVASPLGFNSILKLLKER 956
               + P+    I  LL+ R
Sbjct: 744 GYRFSKPVSPEEIPGLLRAR 763



 Score = 55.3 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 17/177 (9%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
                 AL      IV      +           + +     R    V    D ++  D 
Sbjct: 8   RWESTDALSAETRRIVAATEAMMASTAHHLSDGIENL-----RLKTIVHELPDFLYVKDR 62

Query: 424 VRDRVTTTPDIATILGLASGSMHG-----PIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
               V      A+ LGL S  +        + ++   +H  D +         +   +  
Sbjct: 63  DSRFVFANTVTASSLGLESADLLTGKRDFDLFDFETALHHFDIE------QQIMATGQAC 116

Query: 479 LQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  E         +    +    P+ N  G+++  IG++ DITE+K+  +     A 
Sbjct: 117 IDMEESYVLPGGKRPICRLTSKIPLRNDRGEVIGLIGVSRDITERKRQEDLHREQAN 173


>gi|309779436|ref|ZP_07674197.1| sensory box protein [Ralstonia sp. 5_7_47FAA]
 gi|308921677|gb|EFP67313.1| sensory box protein [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 144/582 (24%), Positives = 269/582 (46%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +L      +      ++  L V    + V         ++     A IL ++  
Sbjct: 310 IAALVKLLRLENEYRQSRELRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRMSGA 369

Query: 444 SMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRI 499
           S  G  R  L    +  +     R    S +  R GR        V A + Q  W+   +
Sbjct: 370 SWKGRPRVALNDMMLGEDGAILPRAAWPSTLAARTGRAISNVVVGVPAGNGQIVWLRESV 429

Query: 500 RPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +       + I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 430 LPMFSPDSASPHAVLVIFTDITAERSAYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 489

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T ++    ++ I +D +K +N+ +G  +G+ VL    +RI        +LARL G++F 
Sbjct: 490 STGES---ALLYIGLDHFKTVNEAMGHHMGNQVLNMAAQRIRGQAGQRALLARLGGDQFC 546

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +   ++       A  +  ++A P    ERE+ ++ASIG A++      ++ ++ +AE
Sbjct: 547 VAI---DDPNAADTLAQQVLDALARPFTGGEREVHLSASIGVAAYPEDGGDAATLVSHAE 603

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+   ++ LVY P   L   E+V
Sbjct: 604 AAMYRAKENGRNRITRYSRALETQMLRRFTLNERMRRALARGQVRLVYQPKYALDSGELV 663

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL+QW  P+ G +S SEF+ +AEE   I  +  + L +      +W  +       +
Sbjct: 664 AVEALMQWSDPELGAVSPSEFIDVAEESGYILELGRWALMQACAQGEAWARKFGFTG-RM 722

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   +   +  +  +P R++L  +ESV++ + + ++ LL  L   G+
Sbjct: 723 AVNVSARQCDAGVIERDVDEALKASGMAPGRLELELTESVLLADRQSTQRLLMSLAARGV 782

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            ++LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 783 RISLDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPGVPDCVALTKTIIAMARALNMTVT 842

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        LT   CD +Q      PL  +++ +LL+ R
Sbjct: 843 AEGVETPEQTAFLTAHACDEVQGFLFGRPLEVSALEELLRTR 884


>gi|325277590|ref|ZP_08143176.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324097271|gb|EGB95531.1| GGDEF domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 577

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 211/443 (47%), Gaps = 7/443 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LTG+PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 137 ANQELTQLALHDTLTGLPNRTLLADRIEQAIARVAEQGGC-FALMFIDLDGFKPVNDAFG 195

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L ++  R+   L   D LAR+ G+ F  +L+         D A+     ++ P
Sbjct: 196 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVQLQEPDDAMDVAVKQVNLVSRP 254

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ ++AS+G   +  +     E+L+NA+ AMYHAK  G N    F   ++S   
Sbjct: 255 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYRFFDVSMNSNAR 314

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL  AV   +  L Y P       + +G EAL++W+HP+ G +    F+ +AE
Sbjct: 315 QQLQLLQDLRQAVAQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQQGLLMPDRFIALAE 374

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W DQ +     + +N+++       L + +   +    
Sbjct: 375 KTGLIIPIGEWVLNEACRQMRLWLDQGHHQ-WRMAVNLSAIQFSHCGLVDSVAQALQHNG 433

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 434 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 493

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  +     LTR+GCD +Q   +
Sbjct: 494 IDRGFVRELEQDSDDAAIVSAIVALGQALGLRIVAEGVETDRQQAFLTRLGCDSLQGYLL 553

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
             P+     L  L+   P  K+ 
Sbjct: 554 GQPVPAEQFLSKLQAMGPGAKSA 576


>gi|153836012|ref|ZP_01988679.1| ScrC [Vibrio parahaemolyticus AQ3810]
 gi|260901150|ref|ZP_05909545.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|149750766|gb|EDM61511.1| ScrC [Vibrio parahaemolyticus AQ3810]
 gi|308109338|gb|EFO46878.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 774

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+  + +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + + P      E  +T S+G + +      + ++L  A++AMY  K  G +    +  +
Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ N  L + Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  +  F +++       W+      P+F+ +N +S      + L   ++
Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACHQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  + +    +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK +   I+A+ I  +  +  L  + C+
Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + P+      +LL +
Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770


>gi|313682488|ref|YP_004060226.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155348|gb|ADR34026.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 561

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 133/552 (24%), Positives = 261/552 (47%), Gaps = 18/552 (3%)

Query: 405 ERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           E     V  +G +V+  D+   + +       ++ G   G     +      +  +    
Sbjct: 11  EPMEAIVNNTGALVYVIDLSSYEILYANKQCKSLFGDIEGKACYSVLQNGQNVPCDFCPM 70

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY-IGIANDITEQ 522
            +  +D          ++E +    + +++    RI  +   NG + +  IGI  DIT+Q
Sbjct: 71  QQQPIDPLSLPVGTYFEWENQN-TRNGRYYLYNDRI--IRWKNGQLAKVQIGI--DITDQ 125

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK    +      D LT +PNR  F   L+ ++  +    +    ++ ID+D +K IN+ 
Sbjct: 126 KKLELDLKNLTHYDTLTNLPNRLLFTVHLSNMIHHTYRSKHY-AAILFIDLDHFKTINNT 184

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAM 637
            G +VGD +LV   +RI  +++  D +AR  G+ F +++ +  +            A  +
Sbjct: 185 KGHSVGDQILVETAKRIFNIVRQCDTVARFGGDEFVVLINTNKDDKIQATADAQFVAEKI 244

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P  + + +   +ASIG A +T  + +  ++LK A+ AM++AK  G N    F  
Sbjct: 245 LAELEKPFYIDDFDFRTSASIGIAMFTDLEHSIDDLLKYADSAMHNAKTSGRNTFRFFDP 304

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYL-VYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +       + + L  A+EN+ + L   + I+    + +VG+EAL++W+ P+ G IS 
Sbjct: 305 LLQKMMEDRACMLDRLRKAIENNFMALHYQNQILVNRHQHVVGVEALLRWNDPEHGMISP 364

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I  +  +++    + +  W D        I +N++ K    ++    M
Sbjct: 365 GEFIPLAEESGLIIPLGEWIMREAVKQLKIWEDDPVKKDWRISVNVSYKQFEKDDFVSLM 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           ++++ +   + +R++L  +ES+++ N E +   + +L+ +GISL++DDFGT  S LSYL 
Sbjct: 425 ESILQEYPTAANRLRLELTESLLIKNTEEALHKIRQLKVLGISLSIDDFGTGYSSLSYLK 484

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +         + I+ +II + +     +IA+ +  E   ++L  MGC
Sbjct: 485 QLPIDELKIDQSFIRELTTNRNDVIIVETIISIGQKFGFEVIAEGVETEEQYQKLVLMGC 544

Query: 933 DYIQDSHVASPL 944
           +Y Q      P+
Sbjct: 545 EYFQGYLFGKPI 556


>gi|90023471|ref|YP_529298.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89953071|gb|ABD83086.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 682

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 113/436 (25%), Positives = 225/436 (51%), Gaps = 6/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K  E     AF DNLTG+PNR    +R    ++ +    N    ++ +D+D +K IN
Sbjct: 234 ELEKLAEEFRFRAFHDNLTGLPNRALLNERFGLCIEHARRCGNKFVCLL-LDLDDFKTIN 292

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD++L+ + +R+   ++  D++ RL G+ F I+             A  +  +
Sbjct: 293 DTKGHDYGDELLIGVAQRLKASVRAEDLVCRLGGDEFIILATDIETEFDARQIANNILFA 352

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++  I + + +I    SIG A +     T   + ++A++AMYHAK  G N    F     
Sbjct: 353 LSEDIVIKDDKIKTAVSIGGAIYPQHGETVGVLKRHADVAMYHAKDGGKNRFSLFSHGMQ 412

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+MI+ DL  A+ +++L + + P +     E+ G EAL++W HP+ G ++  +F+
Sbjct: 413 EEVHYRLMIQRDLEPAILDNQLIIYFQPKVLAETGEVAGCEALVRWQHPEEGFLTPDKFI 472

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  +I+ I+ +++    + +  W  +    P+ I +N++ +     ++ E ++  +
Sbjct: 473 PYAEETPLIREIDYYVIRECCKKLKEWAARF-DKPVPIAVNLSGRHFRSFKIVEVLKEAV 531

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    SP  +++  +E+V++ +P++++ ++  ++ IG +++LDDFGT  S L+YL  +P 
Sbjct: 532 ASAGISPDLLEIEITEAVLIADPDKAQKVVHAIKSIGFTISLDDFGTGYSSLNYLRTLPI 591

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E+   + R I  +AK ++ T++A+ +  E  ++ L  +GC   Q
Sbjct: 592 DIIKLDRSFIANIDTSEQDRRLTRGITSLAKGLDLTMVAEGVETESQLQTLLDLGCHCFQ 651

Query: 937 DSHVASPLGFNSILKL 952
             + + P+     L  
Sbjct: 652 GYYFSKPVPETEFLAW 667


>gi|304309705|ref|YP_003809303.1| PAS/GGDEF domain protein [gamma proteobacterium HdN1]
 gi|301795438|emb|CBL43636.1| PAS/GGDEF domain protein [gamma proteobacterium HdN1]
          Length = 708

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 139/587 (23%), Positives = 264/587 (44%), Gaps = 21/587 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++G   +    +                L +      ++  D     +     +  + G 
Sbjct: 119 VVGLIGVSIDASNRAPHSAALEQNRLLDLFLNHIDAHIFQKDANGRFLYANRPVVRLYGR 178

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               + G     L  +   +        D  +         +  +R AD           
Sbjct: 179 TEAEILGHTD--LELL-PEEIARALMATDQEILQSGQPRACQEAIRGADGVLRHFWSSKL 235

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ N  G     +G+A DI+E  +  E +      D LTG+ NR  F  RL   L     
Sbjct: 236 PLLNP-GQPPTLVGVATDISELLELQERLHRQQTTDELTGLANRSLFESRLQQALTA--- 291

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP---DILARLSGNRF 617
            ++    V+++D+D +K IN   G A GD +L  +  R+ +        + +AR   NR+
Sbjct: 292 -EDTTWAVILLDLDDFKYINSAHGQATGDTLLRQVALRLEQCPAAQQLRNTIARFGANRY 350

Query: 618 GIIL--ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            ++L   + ++  ++A  A  + +++A+P+ + E+   +TASIG + +        ++L 
Sbjct: 351 ALLLEIPNADSGAQVAQMASCLTQTLALPLQIGEQLFHLTASIGVSLYPLDSQAQQQLLS 410

Query: 676 NAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV--ENSELYLVYHPIIRLM 731
           +AE A+Y AK  G N V  +         +R  ++  L  A+   +    L Y P I+L+
Sbjct: 411 HAEAALYQAKALGRNQVCFYSPELGQRVQERAHLEHALRAAIVEPDQAFELHYQPKIQLL 470

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             + VG+EAL++W  P+ G +S  +F+ +AE+L +I A+  + +    R + +WR  +  
Sbjct: 471 SGQAVGVEALLRWPRPE-GMVSPLQFIPLAEQLGLINALGGWAITTACRQLAAWRGTSLD 529

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + I +N+++  L D++L   +   + +       ++L  +ES++M NPER+   L +L
Sbjct: 530 -GLKIAVNLSAHQLRDDKLVSFIADQLQRYGVPAKSLELEVTESLMMDNPERAIAYLHQL 588

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNI 909
           R +G+SL +DDFGT  S  SYL  +P D +K + + +T   +      +   +I +AK +
Sbjct: 589 RALGVSLAIDDFGTGFSSFSYLKQLPVDCLKLDKAFITNIAKDAREADLCAGLIMLAKRM 648

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             T++A+ +  E  ++ L +M C+ IQ    + PL    +   L+ R
Sbjct: 649 GLTVVAEGVEEEAQLELLRQMDCELIQGYFYSKPLSIRPLEDYLRGR 695


>gi|322419628|ref|YP_004198851.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320126015|gb|ADW13575.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 705

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/583 (20%), Positives = 245/583 (42%), Gaps = 21/583 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDI 434
           +  ++      +            + +  +R S     + D++    +     V      
Sbjct: 120 LFRILDRVGEKLTLRRLVARQVAALRASEQRFSTIFQATPDLLSIASLQDGRLVEVNEAF 179

Query: 435 ATILGLASGSMHGPIRN----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
              LG     + G        WL              L   +  +      E R++A + 
Sbjct: 180 LRALGFDRQEVIGRTPEELGLWLDAGEP-------AALLQALAEKGAVRDLEVRLKAKNG 232

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           Q    ++    +    G+    + +  DI+E+K+  + I   A  D LT +PNR+ F+D 
Sbjct: 233 QELEGLVSADSIEME-GNP-FLLTLFKDISERKRLEQIIKHQAQHDPLTDLPNRKLFMDF 290

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L  +  +      V+ +D+D +K+IND LG A GD +L ++ +R+   ++  D +A
Sbjct: 291 LALELAQARRNKK-SLAVLFLDLDHFKQINDTLGHAAGDLLLQAVAQRLKRCVRESDTVA 349

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F +++     +  +      +      P  L   E+  + S+G + +     + 
Sbjct: 350 RIGGDEFNVLMPDLAQTDDVGTVVSKIMGVFGPPFRLEGIEVQASTSLGVSMFPDDGESC 409

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPII 728
            E+L+ A+ AMY AK   GN  + +          R  ++  L  AV   EL LVY P++
Sbjct: 410 EELLQKADGAMYVAKQSDGNSYQFYNDEINARTVSRQNMEMRLRQAVSRGELELVYQPLL 469

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L    I   EAL++W HP+ G +  ++F+ +AEE   I  I  +++ +    +  W++Q
Sbjct: 470 NLGTGRISAAEALLRWHHPERGLLFPAQFLTVAEETGAIVPIGEWVIHQACTQMKEWQEQ 529

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + + +N+++++       E     +S+T  +P  +++   E  +M N       +
Sbjct: 530 GLD--LSLAVNLSNREFHHPNFLEMTMTALSETGLAPGSLEMDIPERAIMDNASLPVKDM 587

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
            RL + G++ ++DDFG   S L  +  +P   +K + S +         + ++ ++I M+
Sbjct: 588 LRLTEAGVAFSVDDFGIGSSSLQRIRQLPIAKLKIDRSFIRDILTEPGDLDVVSAMICMS 647

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +++  + A  +     +  +   GCD +Q   +  PL     
Sbjct: 648 HSLKLRVNAVGVEAPGQLALMEDYGCDEVQGDLIGRPLPAAEF 690


>gi|169632940|ref|YP_001706676.1| hypothetical protein ABSDF1184 [Acinetobacter baumannii SDF]
 gi|169151732|emb|CAP00534.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
          Length = 949

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/577 (22%), Positives = 265/577 (45%), Gaps = 15/577 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            ++ V  T    Q    D E   L    +  + + ++  D   + +   P    + G + 
Sbjct: 375 ALRMVGMTRDIHQE-KKDQEHLRLSAIVLEQAAEGIFILDEKLNYIEVNPYYEKLTGFSK 433

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRI 499
             +       +      ++   +      +     + G    +F  +    +  ++ + I
Sbjct: 434 SELLSQQLFNITI----NQKLQQQQFHDSITQQLLKTGEYMGQFDEKFTSGKSVYLWLHI 489

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +    I+ YIG A D+TEQK+  + +      D+LT +PNR  + ++L   L   +
Sbjct: 490 NAVKDEYNQIINYIGFARDLTEQKRQEQHLSYLKNYDSLTHLPNRFYYYNQLHQYLVNPS 549

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ I+ID+++  N+ L    GD++L    +R+        ++A L+G+ F I
Sbjct: 550 YSFK-NLALIRINIDRFRAFNEFLNNDSGDELLKQFAQRLRLTNINAILVAYLNGDDFAI 608

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           I         I  +   + +++  P  + E+E  +TASIG A +         +  +AE 
Sbjct: 609 IYEISPIHPNIEQYCQNILQALNAPFYIDEQEYFITASIGVACFPEHGRQIDHLNNHAEQ 668

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           A+  AK  GGN +  +   +    +   ++++L  A++N E  + Y P I L D+ I G 
Sbjct: 669 ALSEAKRLGGNTISYYCNKTTNPYKTADLEQELRKAIQNDEFVVYYQPKINLNDKSIKGF 728

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP+ G +  + F+  AE   +I  I   +L+++ + +  W+       + + +
Sbjct: 729 EALIRWQHPEKGLVMPNMFIPFAERSSLISDIGKVVLDKVGKQLQEWKKA-GYADVRVSV 787

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI ++ +    L   +  ++       S ++L  +ES ++ N +  + LL  +++  IS+
Sbjct: 788 NIVAQQIHRGLLLSDLDEVLDTYHLDGSNLELEITESALLDNTDNVKKLLHSIKERNISI 847

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
            LDDFGT  S L+YL   P D +K + + ++   +++  AI+ ++I M K++   ++A+ 
Sbjct: 848 ALDDFGTGYSSLAYLTEYPIDVLKIDQAFVSKIGDQKQEAIVNAMIAMGKSMGLKLVAEG 907

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  E  +  L +  CD++Q    + PL  N IL+ L+
Sbjct: 908 VETEEQVIYLQKQQCDFLQGFFFSRPLHPNQILQYLQ 944



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 97/333 (29%), Gaps = 40/333 (12%)

Query: 219 IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278
           +    +       + I+   L   +      +        + ++S+ II L       R+
Sbjct: 89  LVLQGICLASGILMGINIIVLHFSLPDTLISVSDVHILIALFITSAHIIGLTFLTQQPRY 148

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                   +       +   +  +       +      ++    T    Y   + Y++  
Sbjct: 149 F-------YLLFIPSTVPLIIGQFTHSQITQLPFYFAYNLAFVATLLCAYATQRNYQKIS 201

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L+                +     +      L   L   V        Q         Q
Sbjct: 202 QLL----------FKNKQLVQVAEQHTQWAEELCVQLQQEVNKSKDIEAQLQFNNHLLEQ 251

Query: 399 GIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +           ER        + A   +G   WDWDI + ++       T       +
Sbjct: 252 KVRERTYDLTKMNERLESHHHNLAFAHETAGIRPWDWDIEKQKLEI-----TFFDQQKQT 306

Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + P+  ++ L  IH NDR  F   L   +  +       FR+   +  + W+    R +
Sbjct: 307 QNTPLHLKSILERIHPNDRKLFDERLKEHLEGKSDHFNITFRILRRNGSWRWIHDVGRVI 366

Query: 503 SNS--NGDILRYIGIANDITEQKKSLEGILCNA 533
           S        LR +G+  DI ++KK  E +  +A
Sbjct: 367 SRDPKTNKALRMVGMTRDIHQEKKDQEHLRLSA 399


>gi|28901366|ref|NP_801021.1| sensory box/GGDEF family protein SrcC [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362921|ref|ZP_05775790.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260880208|ref|ZP_05892563.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895325|ref|ZP_05903821.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809913|dbj|BAC62854.1| ScrC (sensory box/GGDEF family protein) (involved in swarmer cell
           regulation) [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085558|gb|EFO35253.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091669|gb|EFO41364.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|308111922|gb|EFO49462.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 774

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+  + +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + + P      E  +T S+G + +      + ++L  A++AMY  K  G +    +  +
Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ N  L + Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  +  F +++       W+      P+F+ +N +S      + L   ++
Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACHQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  + +    +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK +   I+A+ I  +  +  L  + C+
Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + P+      +LL +
Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770


>gi|260775416|ref|ZP_05884313.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608597|gb|EEX34762.1| hypothetical protein VIC_000790 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 648

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 129/544 (23%), Positives = 244/544 (44%), Gaps = 35/544 (6%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD----------SFVGYRR 476
            ++  P    +LG    S    +   L  + ++++                  + +   R
Sbjct: 121 IISANPAAVRLLGFEDNS--DLLGEELSRLFVDEKTKTVFSKSLSSSLAKAPLTCLTGPR 178

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
              +   ++ A D        ++  + +++                K      L +A  D
Sbjct: 179 CGFERRVQLHADDAMVLGCNTQLVLIQDADETP-------------KHLSNKPLEDAHID 225

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+ NR  F  RL   +      +     ++ +DID +K IND LG  +GD V+  ++
Sbjct: 226 SLTGLYNRFGFTKRLEQFI-----HNETPLLLLYLDIDNFKNINDSLGHHIGDKVIKEVS 280

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+  LL    ++  L G+ FG+IL    N+      A  +   I  P +L      +  
Sbjct: 281 SRLKRLLPQHAVVGHLGGDEFGLILPEPENNRMAEILAERIISLINQPFDLHHFSKRLAC 340

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714
           SIG  ++      +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A
Sbjct: 341 SIGSVTYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKA 400

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + L + Y P +   D  I G EALI+W HP  G IS   F+ +AE   +I+ +   +
Sbjct: 401 LQQNGLEVWYQPKVNARDFSINGAEALIRWKHPVEGYISPGAFIPVAERAGLIEHLGRVV 460

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +  +   +  W     + P  + IN++ +   + +L + M+ L+  T   P+ I    +E
Sbjct: 461 MREVFSTVKRW-KLQGILPGRVAINLSPEQFGNPKLIDYMEKLLRTTELDPNCITFELTE 519

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-- 892
           S VM + E +  +L  ++K+G +L++DDFGT  S LSYL   P D +K + + +      
Sbjct: 520 SAVMSDSEHTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTL 579

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            K++ ++ +II + K++  T++A+ +  +     L+ + C+ IQ  H   P     + +L
Sbjct: 580 PKQVTVIENIINLGKSLNLTVVAEGVETQQQATLLSNLNCNSIQGFHFYRPQPKQEVEEL 639

Query: 953 LKER 956
             + 
Sbjct: 640 FAQH 643


>gi|315127655|ref|YP_004069658.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315016169|gb|ADT69507.1| sensory box protein [Pseudoalteromonas sp. SM9913]
          Length = 1501

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/564 (21%), Positives = 243/564 (43%), Gaps = 16/564 (2%)

Query: 397  SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LP 454
             + +F +  R  + A   + D V+  D   +   +   + +  GL++        N  + 
Sbjct: 938  RERVFEEHARLFTAAFEQTRDWVFILDKNFNIRASNKSLQSAFGLSAEPRSTRALNLGMS 997

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                 D       L+            E  V  A+ +   ++++I  +++ +  +  ++ 
Sbjct: 998  RSSYFDYLRIMQKLEV-----GEHFSCEDTVVLANKEQRHVLVKISAVADESQRLSSFVI 1052

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            I  DI  QK +   +   A  D+LTG+PNR  F DR    +D +      +  ++ ++I 
Sbjct: 1053 ILTDIHAQKSAESELHILANYDSLTGLPNRTLFNDRAIHAIDQARRHQ-CKVALLHVNIK 1111

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++K  ND  G    D+++  +  R+   L+  D +ARL G+ F I++       ++    
Sbjct: 1112 RFKYFNDSFGTENADEIIKLVANRLKTALRPCDSVARLGGDEFVILVEDIQQIEEVLLIC 1171

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHV 692
              +   ++  I + ++ + V  SIG A +         +LK + +A+Y+AK    G    
Sbjct: 1172 TKLMDCVSKDIVMNQQSVNVHLSIGVAIFPDDAAHYKALLKASNVALYYAKDGLEGCYKF 1231

Query: 693  ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                ++      + ++  L  A    E    Y PII    ++ VG E L++W  P     
Sbjct: 1232 YKQEMNQRVERAMHLESQLIKAYHEHEFCNYYQPIINASTQKTVGFEVLLRW--PDNQLA 1289

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            S+ EF  +AE + +I  I L   +R    +  WR     P +++ IN+++ D     L  
Sbjct: 1290 STQEFANVAENIGLITKIMLQTFKRALVQLARWRKVC--PDLYLSINLSALDFEFIGLVP 1347

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++  ++     P  I    +ES++M + E +   +  L+++G  L +DDFGT  + L+Y
Sbjct: 1348 EIRQALNNAALPPEAIVFEITESILMRDSEHALKNMDLLKQLGCKLYMDDFGTGYASLTY 1407

Query: 873  LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P D +K + S +          AI++S + +A ++    IA+ +     +  L   
Sbjct: 1408 LKRFPIDVLKIDRSFVQDIGIDSDNEAIIQSTLTLASSLGKECIAEGVESAHQLAFLKAQ 1467

Query: 931  GCDYIQDSHVASPLGFNSILKLLK 954
            GC Y Q    +  +    +L+L++
Sbjct: 1468 GCSYFQGYLFSKAVPKEQVLELIE 1491



 Score = 99.6 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 6/180 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH---VLATGYFSQGIFSDGERQSLA 410
             + I  R         L    +L++ ++   V++            +       R  LA
Sbjct: 771 ATLNIKVRYPLWRAPYFLALYTILLITIVTAWVMRRNKIQRILLAAHKESQDSEARLKLA 830

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           + GS   VWDW   +  +   P +   LG    S+   + ++L  IH  +R  FR     
Sbjct: 831 LEGSESGVWDWQASQLNIYQ-PRLVNELGYEDDSV--SLDDYLEKIHPQERAIFRLEWLE 887

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           F+   +G     +R+R A   + W     + +        +  G   ++T ++   E   
Sbjct: 888 FLSTDKGYFNCTYRLRHAKGHWRWYKDFGKVVEWDKKTPQKVAGTYTNMTRERVFEEHAR 947


>gi|71278228|ref|YP_271298.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71143968|gb|AAZ24441.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 762

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 236/479 (49%), Gaps = 29/479 (6%)

Query: 501 PMSNSNGDILRYIGIAND----------------------ITEQKKSLEGILCNAFQDNL 538
           P+ +S+G +L   G+ +D                      + E++++ + I   A+ D L
Sbjct: 280 PIKSSSGKVLGAFGMYHDYPALPNEQESNDLTSAARLAGIVMEREQNQKRIQNLAYTDEL 339

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T + +R  F   +  ++ +SA + N +  ++ ID+D +K +ND LG  VGD +L  + +R
Sbjct: 340 TKLSSRPHFYINIEELVKISAREKN-KFGLLYIDLDNFKTVNDSLGHDVGDLLLKKVAQR 398

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +    +  D +ARLSG+ F I + +  +    A  A    + I+ P+ L  R+ T   SI
Sbjct: 399 LKSACREIDYIARLSGDEFCIAVNNVMDDYGAAHVAQRCLELISKPVELAGRKFTPACSI 458

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716
           G A +    I    +LK A+ A+Y AK  G N    ++         R  I++ L  A+E
Sbjct: 459 GIAHYPDDGIDLQTILKAADTALYAAKDLGKNRFAFYKKELTDKAEYRFKIEQHLREAIE 518

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +L LVY P + +    I+G+EAL +W+HP  G +S  +F+ +AE++ MIK +  ++L+
Sbjct: 519 QQQLSLVYQPKVDIKSGNIIGVEALSRWNHPLLGQVSPVDFISMAEQIGMIKPLTEWVLK 578

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W++      I I +NI+    LD++L   ++ +I +T   P  ++L  +E V
Sbjct: 579 TACNQATLWKEA-GFSSIIIAVNISPSHFLDSDLVPLIKRVIKETGMLPGDLELEVTEGV 637

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
           +  NPE    +   L+++GI L +DDFG   S  + L ++  D +K +   +       K
Sbjct: 638 IQTNPENL-AVFEHLKELGILLAIDDFGVGYSSFASLKHLNVDYLKIDKYFIDDILVDHK 696

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++ S+I M  N+E  I A+ I  E     L  +GCDY Q    + P+  N I KLL
Sbjct: 697 AKLLVGSMIEMGHNLEHKITAEGIESEEQATMLQELGCDYAQGYFFSKPVSANQISKLL 755



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +  + +  ER +LA+ G+ D +WDWD+  D V  +P   ++LG +   +   +  W   +
Sbjct: 33  TAELLNSEERFALAMRGASDGLWDWDLATDDVYYSPRWKSMLGYSEHELENTLSTWAAMV 92

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI-RPMSNSNGDILRYIGI 515
           H++D+D     +  F+       + E R+R       ++  R  +     N + +R IG 
Sbjct: 93  HVDDKDFVLKNVHKFLSGEVDTFEVEMRMRHKVGHDVFIRSRAFKVTRGENNETIRLIGT 152

Query: 516 ANDITEQKK 524
             DIT+QKK
Sbjct: 153 HVDITQQKK 161


>gi|34498882|ref|NP_903097.1| hypothetical protein CV_3427 [Chromobacterium violaceum ATCC 12472]
 gi|34104733|gb|AAQ61090.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 662

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 128/551 (23%), Positives = 255/551 (46%), Gaps = 20/551 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNF 464
           R + A+L +  ++  +D     +   P        +   +      W  + +H ND    
Sbjct: 128 RSTEALLHTSVLITLYDGNGGALYRNPA-------SRERVAVAGEGWRQHFVHDNDWQQL 180

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           R  + +      G  +   RV   +    W  +  R   ++       +    DIT+ K 
Sbjct: 181 RQGVAAC-----GEARLLARVNTREG-MRWHEVAARACRDAVTGQDALLVSEVDITDLKH 234

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +       A  D LTG+PNR      L   L  +  +   +  +M ID+D++K +ND LG
Sbjct: 235 AEARASFLANHDVLTGLPNRNGIRSELLPHLQQALRNGR-QVALMFIDLDRFKNVNDSLG 293

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD++L+ +  R+  LL   +  ARL G+ F ++L +   + +    A  + +++++P
Sbjct: 294 HACGDELLIRMAGRLVGLLGHDEKAARLGGDEFLVMLSAPQVAERAEALARRILQALSVP 353

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
           + L   ++ V+ASIG +     ++   +M+++A+LAMY AK  G N++  F     +   
Sbjct: 354 MRLEGMDVGVSASIGISVCEGRELDLEQMMRHADLAMYAAKDAGRNNLMFFTPALEARSQ 413

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ ++ D+   ++  E    + P + +    +VG EAL +W HP+ G +    F+ + E
Sbjct: 414 AQLALENDIRRGLDCGEFIAYFQPRVDIASGRVVGAEALARWRHPQRGLLMPDSFIPMCE 473

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  M+  +   +L + AR    WRD+     + + +N+++   +D  L   ++ +++ + 
Sbjct: 474 DCGMVMELGRQILLQAARQQRQWRDRGLD--LLVSVNLSACQFVDPGLPGQVEQILADSG 531

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R++L  +ESV++G+ E++   L  +R +G+ + +DDFGT  S L+YL   P  ++K
Sbjct: 532 CQPDRLELEITESVLLGHDEQTMSTLQAMRALGVRIAVDDFGTGYSNLAYLQRYPLTSLK 591

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + S +      + AI   I  + + +   ++A+ +  E  +  L   GC   Q    + 
Sbjct: 592 IDRSFIADLD-DKPAIAELITTLCRMMGLNMVAEGVETEAQLAWLAERGCQEYQGYLCSP 650

Query: 943 PLGFNSILKLL 953
            L      + L
Sbjct: 651 ALSAQEFQQRL 661


>gi|51891865|ref|YP_074556.1| hypothetical protein STH727 [Symbiobacterium thermophilum IAM 14863]
 gi|51855554|dbj|BAD39712.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
            14863]
          Length = 1016

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 137/668 (20%), Positives = 272/668 (40%), Gaps = 15/668 (2%)

Query: 287  FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
            ++ +  +  +  ++      + S++     ++ L            G+    L       
Sbjct: 352  YAMLGAMLGVLSLAQILLPGSMSVSLPFGIAVGLMIIVLGAAWVHAGHAHRSLYRQLTET 411

Query: 347  IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                     +      +    + AL      ++      +++  +A       +    ER
Sbjct: 412  SQTLVQNNRVLQAANEELAAQREALAAQQDELLRQHRI-LVEQAMALSAQRDELLESEER 470

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               A   +   V   D+    +   P +  +LG   G + G         H +D +   +
Sbjct: 471  FRTAFEYAPIGVALVDLDFVIMRANPALHDMLGYRRGDLTGVP--LRQITHRDDLEEQES 528

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +L++    + G    E R    D +  W+ + +  + +++G    ++    D+T+++++ 
Sbjct: 529  LLNAVRAGQAGSCAMEKRYLRHDGRAVWVAVSVALVRDAHGTPRYFVAQVMDVTDRRQAE 588

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            E +   A  D LT + NR+ F  +L   LD  AT    R  +  +D D +K +ND LG  
Sbjct: 589  EQLRRLAHFDPLTDLGNRRYFQRKLEAALDDPAT---PRGALFFLDFDDFKFVNDTLGHL 645

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GDD+L +L R + E L     +ARL G+ FGI++    ++      A  +  ++   I 
Sbjct: 646  AGDDLLKNLARVMTETLGGRGFMARLGGDEFGILVPGV-DASGAEALAQDLLAAVRSQIA 704

Query: 647  LLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRS 702
                    VT S+G A +     T+  ++ +A+LAMY AKH GG+    +      +   
Sbjct: 705  ANPACPTYVTISVGIALYPDHGHTAETLMLHADLAMYQAKHSGGDRYCMYVAFEPLNGDE 764

Query: 703  DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                 +  L  A+      LV+ PI+ L   E+   EAL++   P    I   EF+  A 
Sbjct: 765  AGSAWEIRLRAALAEDRFTLVFQPILDLQLGEVTQYEALLRMVEPDGRQIPPGEFLPAAA 824

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               ++  I+ +++ R    I   + +     + + +N++ + L D  L   ++ LI +  
Sbjct: 825  SCGLMPEIDRWVVRRAVETIAREQARGRR--LTLSVNLSGQALNDPSLVPLVRDLIDRHQ 882

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  ++   +ES  + + +++   +  L  +G    LDDFG   S L YL  +P  T+K
Sbjct: 883  IPPGSLRFEVTESAAVTDLDQAAACIEALTDLGCEFALDDFGVGFSSLRYLKRLPVRTLK 942

Query: 883  FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +G  +          +++RS++ MA+ +    +A+ +  +  ++ L R G D  Q  +V
Sbjct: 943  IDGGFIERLPDDPVDQSLVRSMVTMARGLGVRTVAEYVTSDRALEMLRRCGVDAAQGYYV 1002

Query: 941  ASPLGFNS 948
              P     
Sbjct: 1003 GPPGPLPE 1010


>gi|27381656|ref|NP_773185.1| hypothetical protein bll6545 [Bradyrhizobium japonicum USDA 110]
 gi|27354825|dbj|BAC51810.1| bll6545 [Bradyrhizobium japonicum USDA 110]
          Length = 892

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/447 (27%), Positives = 218/447 (48%), Gaps = 8/447 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++   I   A+ D LTG+PNR      ++  +D   T       +  +D+D +K +N
Sbjct: 431 ERKEARAEIARLAYHDILTGLPNRAQLRHLISAAIDACPT--GSHVALAFLDVDHFKDVN 488

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L+ L +R+ E +   DIL RL G+ F ++L    ++      A  + ++
Sbjct: 489 DTLGHAAGDELLIQLAQRLREQIGPEDILGRLGGDEFVVLLPH-RDAEGAERVATGITEA 547

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P+ L  R++ ++ASIG + +         +++ A+ AMY AK  G +    F     
Sbjct: 548 LAAPLRLGSRQMQMSASIGISLYPDHATDIDTLMQQADAAMYMAKQAGRSTHRLFSAEMN 607

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ +   L  A+   EL L Y P IR  D  I GLEAL +W   + G++S ++F+
Sbjct: 608 GLTEQRLALIAALRRAIAEGELTLSYQPQIRSCDGAIHGLEALARWHDAELGDVSPAKFI 667

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I+ I L+ +    R + SWR      P  + +N++  +  +  L   +  ++
Sbjct: 668 PLAEECGLIEQIGLWSVREACRQMASWRRAGLSIPC-VSVNLSPINFRNVTLAARLADIL 726

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P  + L  +E   M +   +   +  +R++G+ L++DDFGT  S LS L ++P 
Sbjct: 727 AEYGLPPDALMLEITEGAFMQDSVAALETMNAIRELGVGLSVDDFGTGYSSLSRLAHLPI 786

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S M         +AI  +++ + + +  T++A+ +  E   K L  +GCD +Q
Sbjct: 787 RELKIDRSFMRDIETDAGALAIATAVVRVGQGLGMTVVAEGVETEAQRKLLADLGCDVVQ 846

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
               A  L   +  + L E        
Sbjct: 847 GFLYAPALPPVAFERWLIEHCAEQARA 873



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 7/155 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAV-----LGSGDIVWDWDIVRDRVTTT 431
           + I +    I   +    F++ + ++ ER+  +A+       +  +V   D  ++ V   
Sbjct: 121 VAITLSSATIDGAVHRIVFARDVTAEAERRARIALLHAVSDQTNRVVIITDTEQNIVYVN 180

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
               ++ G  S    G     L      DR     ++   +   R R + E      D +
Sbjct: 181 SAFTSLFGYTSEEAEGRRAGELIAGRHTDRKTVAKLVKRLMHGDR-RGEAEVLAYDKDGE 239

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             W+  RI  + +  G +     +  DITE K+  
Sbjct: 240 EIWVCARIDALRDKKGRVKHIFALLEDITETKQLR 274



 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 15/128 (11%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +    A+  + D V   D  +  +        I  L+   + G             RD  
Sbjct: 44  QLLLAALERADDGVVIVDDAQRIIHFNTAAERIWKLSRTEVLG-------------RDAA 90

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L           + E  +   D     + I +   +  +G + R +  A D+T + +
Sbjct: 91  VLTLKCLQADAVTDFRDEISLMRRDGSRIKVAITLSS-ATIDGAVHRIV-FARDVTAEAE 148

Query: 525 SLEGILCN 532
               I   
Sbjct: 149 RRARIALL 156


>gi|225850185|ref|YP_002730419.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Persephonella marina EX-H1]
 gi|225645147|gb|ACO03333.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Persephonella marina EX-H1]
          Length = 654

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/586 (22%), Positives = 256/586 (43%), Gaps = 21/586 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTP 432
             V +             +  +    D +     +      S    + +      + +  
Sbjct: 80  FAVFVFPVIDKLKNRLLVFLVEATQKDIQEMRELLNTLIEKSPAGSFIY--RETFIFSNR 137

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQ 491
               I G +   +   IR W   +H   R++    ++  +  +     Y+   + + D +
Sbjct: 138 TFQEITGFSEEELK-KIRPW-EIVHPKFREDVIKTINDRLSGKMMDKHYDLLTIISKDGK 195

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
              + +    +    G      G+  D TE+ +  + +      D LTG+PNR+ F++ L
Sbjct: 196 EKHLELITTTIK-YQGKYAGM-GVCVDRTEKVELEKRLNYLYSHDELTGLPNRKKFIENL 253

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              LD +  +++L   V++IDI  +K IN   G   GD VL+S+++++ EL+   D +AR
Sbjct: 254 KKALDYARKNNHL-VAVILIDIKDFKIINKQYGYETGDKVLISISKKLEELMTDVDSVAR 312

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           +  ++FGI+L +  +  K+      +  S+    ++   +I V   +G + +    +   
Sbjct: 313 VGDDKFGILLYAFRSFEKLTGKIEDVFNSVEGEYSINGFKIFVEIKMGVSVFPKDGVYPD 372

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           ++ KNAE+A+  AK   G   E F  +     +  + +KE +   +E + + + Y PII 
Sbjct: 373 DLYKNAEIALLKAKRTPGKSFEFFSKNIYSEITRILNLKEKIRKVIEENNILIYYQPIIN 432

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L   EI  LEAL + +      I   + + +AEE  +I  +   +L  + +       + 
Sbjct: 433 LKTGEIDSLEALFRLNDGNETVILPKDIIPVAEETGLIVELGERILNSVLKF-----SKK 487

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               I + +NI+S  L            +  +   P RI +  +E+ +M +   +   L 
Sbjct: 488 VPQNIKLSVNISSIQLNKPMFDRDFLLSLENSDIPPDRIVIELTETAIMDSVSENITKLR 547

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            L++ GI + +DDFGT  S L+YL  +P D +K + S + G         I+++II MAK
Sbjct: 548 NLKEKGIKIAIDDFGTGYSSLNYLKILPVDFLKIDRSFVKGIGRDRNDEMIVKTIISMAK 607

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++    IA+ +  E  ++ L   GCDY Q  +   P+  + I++++
Sbjct: 608 SMNLKTIAEGVETEEQLRFLIENGCDYGQGYYFGKPVPEDKIMEVI 653


>gi|327439971|dbj|BAK16336.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 608

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/617 (21%), Positives = 277/617 (44%), Gaps = 24/617 (3%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
            W L     + +        + ++ Q   +  +V    +IG+ +  H+       + + +
Sbjct: 4   TWRLALTAILIISN-FFIFSNLELSQNITLSIIVFGANVIGWMLGNHLDKYVSSKKELGT 62

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                + A+      +   +   +          + G           +W         +
Sbjct: 63  TLVDYTFALDFVTLGIGITNEKGEFEFVNKAHQDLYGYNLKEFLTK--SWKDCYSPEMAE 120

Query: 463 NFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +     +  +   R  G+ + + +    D       + I  +  S     + I +  DIT
Sbjct: 121 HLN---NQAITQLRIYGKWKGKAKGIRKDGSIFPQELLISNIEGSK----KMICVVRDIT 173

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ++ L  I   A  ++LT +PNR+  L             +++  +++ ID+D++K +N
Sbjct: 174 EQQQYLNYIEHIAEHNDLTKLPNRRKLLSDFDKT-----KKESVDTSILFIDLDRFKIVN 228

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+S+  R+  +      +  L G+ F +I+ +          AI +   
Sbjct: 229 DTLGHNYGDKLLISVAERLISIQNEYIKIYHLGGDEFIVIVQNV-EYDYTEFIAIEIINI 287

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  + E+E+++T SIG  S +       ++++ A++AMYHAK  G N  + F     
Sbjct: 288 LKKPYLIFEKEVSITCSIGICSKSEHGYNYEKLIELADIAMYHAKMEGKNTYKFFNEDIR 347

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +     +  + +L  A+ N E ++ Y P   L D  ++GLEAL++W++P  G +S +EF+
Sbjct: 348 KQLERNLLIENELRRAISNGEFFINYQPKCNLADSSLIGLEALVRWNNPLLGIVSPAEFI 407

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  +++  +   +  W+     P   I +N++ +   +NEL + ++  +
Sbjct: 408 PIAEETGLINDIGNWVINAVLYQLHQWQSS-GYPLAKISVNVSQRQFKENELVDYIEKCL 466

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P   ++  +ES ++ + +     L  L+ +G+ +++DDFGT  S L+++  +P 
Sbjct: 467 TTYNIEPQYFEIEITES-LIADFDLIIPQLTSLKNMGVGISIDDFGTGYSSLNFINLLPV 525

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S + G     K   ++++II +  N++  ++A+ I  E  +KEL  + C + Q
Sbjct: 526 DTLKIDQSFIRGLLSNRKNNLLVKTIIDIGNNLQLKVVAEGIETEEQLKELINLNCHFGQ 585

Query: 937 DSHVASPLGFNSILKLL 953
               + PL  + I  +L
Sbjct: 586 GYLFSKPLAADKIESIL 602


>gi|90022956|ref|YP_528783.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89952556|gb|ABD82571.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 581

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/423 (30%), Positives = 219/423 (51%), Gaps = 6/423 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR    ++L   +D          TVM+++ID++K IND LG+  GDDVL+ 
Sbjct: 145 FDPLTGLANRAQLYEQLRRAIDY-GRVHRECVTVMMLNIDRFKNINDSLGVGAGDDVLIQ 203

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  +  +L+  D +ARL  + F ++L   +N   I   A  +  +I  P+N+   EIT 
Sbjct: 204 ISEILRNVLRDNDTVARLGSDEFILLLDKVDNPHHITKIADKILNAIGQPLNICGHEITC 263

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           TAS+G + +     +   +LK+A+ AM  AK  G N  + +  ++S    D ++++ DL 
Sbjct: 264 TASLGVSQFPIHGDSIDLLLKHADEAMARAKSEGKNRYKIYTAQMSERTVDALLMENDLR 323

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  E  L Y P + L   +I+GLEALI+W H   G IS  +F+ +AEE  +I+ +  
Sbjct: 324 RALEQDEFILFYQPQVHLRTGKIIGLEALIRWQHKTKGVISPLDFIPLAEETGLIEEVGA 383

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L         W  Q       + +N++++        E +   ++K+   P  ++L  
Sbjct: 384 WVLAHACERFHHWLKQGLSLG-KVAVNLSARQFRQAHFAETVVEALNKSKLPPQYLELEI 442

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES+ M + +     LG L K+G+S+ +DDFGT  S LSYL   P + +K + + +    
Sbjct: 443 TESLTMQDTDEVLQTLGYLNKLGLSIAIDDFGTGYSSLSYLKKFPVNKLKIDRTFIHDVG 502

Query: 893 E--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 AI +SII +A N+   ++A+ +      + L   GCD +Q  +   PL  N +L
Sbjct: 503 SELDDGAIAKSIIDLAHNMSMLVVAEGVERLGQSRWLYDQGCDQVQGYYFCKPLSENELL 562

Query: 951 KLL 953
           KLL
Sbjct: 563 KLL 565


>gi|221065573|ref|ZP_03541678.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220710596|gb|EED65964.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 935

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 139/562 (24%), Positives = 253/562 (45%), Gaps = 15/562 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      +G+ +   D     V      + I G A   + G     L    
Sbjct: 255 RRSAEELRLAAKVFEHAGEGILVTDAQSHIVNVNRAFSVITGYAREEVMGQTPRLLESDR 314

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++T+  +   +       E   R  +      ++ I  + +  G+I  Y  + +
Sbjct: 315 YDD-EFYQTVWQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 371

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K++ + +   A  D LTG+PNR    DRL   +  +     +   V+ ID+D +K
Sbjct: 372 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 430

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND  G AVGD +L  L+RR+ ++L+  D LARL G+ F  IL+   +          +
Sbjct: 431 KVNDQHGHAVGDKLLSVLSRRMTQVLREDDTLARLGGDEFVAILVDLPDISVSVPILDRL 490

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +    P+ + +    V+ASIG + +   +   + ++L+ A+ AMY AK  G N    F 
Sbjct: 491 IEVAVQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 550

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R+ R   +  + +  A+ N +  L + P + +   E++G EALI+W HP  G +S 
Sbjct: 551 TEKDRTLRTRHEGFDSIENALANGQFLLYFQPKVNMRTGEVLGAEALIRWQHPTRGLLSP 610

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ I E   +   +  + +E     I  WR      P  I +NI ++ LL  +    +
Sbjct: 611 ASFIPIIENHPLGIDVGKWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 668

Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++S+     P  ++L   E+  + +  +   L+    ++G+   LDDFG+  S L+YL
Sbjct: 669 RGMLSRHPGAQPQDLELEILETSAVEDFVQVSQLMTLCERMGLRFALDDFGSGYSSLTYL 728

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +   +         IAIL +++ +A++     IA+ +      + L RMG
Sbjct: 729 KRLPAHLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLLRMG 788

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C++ Q   +  P+  +   + L
Sbjct: 789 CEWGQGYAIGHPMPAHEFEQWL 810



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +    W  D+    +T + +   +LGL  G+       +L  IH  DR  F    D+ 
Sbjct: 17  ENAHLGSWRLDLDSQLLTCSDEACRVLGLDVGAPIA-FERFLQCIHPEDRPLFDRAWDAA 75

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK------- 524
           +  +   L   +R+  +  Q  W+ +R     +++G      G   DIT+ K+       
Sbjct: 76  MCGK--SLDLRYRIV-SGGQVRWIHLRATFKGDASGRPRAADGTVEDITDLKRVEQALNS 132

Query: 525 SLEGILCNAFQ 535
                   A  
Sbjct: 133 MRRQREELASH 143



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGL 440
             ++ +       Q + S   ++         +++ +    D        +  I  I G+
Sbjct: 115 GTVEDITDLKRVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSHFPYASTRIQEIYGV 174

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A   +          +H  DRD     + +  G        E+RV+  D +  W+     
Sbjct: 175 APEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEAS 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           P +  +G IL + G  +D+T +++S E +   A
Sbjct: 234 PEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 265


>gi|170750603|ref|YP_001756863.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657125|gb|ACB26180.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 828

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/713 (19%), Positives = 275/713 (38%), Gaps = 34/713 (4%)

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
            +L+W          T      I+     +      T  +     +          I  G
Sbjct: 106 TWLYWRTHGDTASAATVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVVAIVTG 165

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL--IVILIGFTVIQ 388
           +      V  + +   +F   + +   +      + +  +L   L +  I ++     + 
Sbjct: 166 LISDAYVVGPLLSVSYLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMS 225

Query: 389 HVLATGYFSQ-GIFSDGERQSLAVLG----SGDIVWDWDIVRDRVTTTPDIATILGLA-- 441
            +       +  +    E   L +      + D +W+ D        +  +A +L     
Sbjct: 226 RLSRQRILDRVRVGDQSETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVR 285

Query: 442 -------SGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADN 490
                     + G         P I            D     RRG              
Sbjct: 286 TLQHASFPALLAGRAEASPKGSPEISPEISPEADQSADLLDRLRRGVAFHQHLIAVDTPA 345

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W+ +  +P  +  G    + G+ +D+TE +++   I   A +D +TG+ NR  F D 
Sbjct: 346 GRRWLRLSGKPFLDQKGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRVMFHDV 405

Query: 551 LTTILDLSATD----DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            + +   +A       +   +++ +D+D +K +ND +G A GD +L  +  R+  LL   
Sbjct: 406 ASEVCAAAAQTSPQAPDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPAD 465

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
               RL G+ F I+    + +   A     +   +  P  +      +  S+G A   + 
Sbjct: 466 AQAFRLGGDEFAILQRGRDGAAARALAEATI-GVLREPYLIDGVRAEIGVSVGIACAPAD 524

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVY 724
                ++L+ A+LA+Y AK  G      F        +   + D  +  A+ + E+ L Y
Sbjct: 525 ATEPEDLLRKADLALYSAKQGGKGRWRGFDRDLEVRVQRRHELDEAMRQALADGEMALHY 584

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++ L D ++VG EAL++W  P  G +S +E + IAE    I AI  + L R   + ++
Sbjct: 585 QPLVGLQDGQVVGCEALLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACAEALT 644

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W  +     + + +NI+S      +    + A++S+T  +  R+++  +ES+ + N    
Sbjct: 645 WPAR-----LRVAVNISSVHFRRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHV 699

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902
              L  LR +G+ + LDDFGT  S LSYL   P D +K + + +   +   + + ++ +I
Sbjct: 700 LDNLRALRALGVRIALDDFGTGYSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAI 759

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +A+++   +  + +  E   + L    C+  Q    +       I  L++ 
Sbjct: 760 MVIARDLRIDVTVEGVETEQQAELLRLRRCNSAQGFLYSPARPPEEIPGLIER 812


>gi|330898348|gb|EGH29767.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 732

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/587 (21%), Positives = 231/587 (39%), Gaps = 18/587 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++   +     +        R       S D +   D     ++       I 
Sbjct: 147 VLQDLAVMVIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  S    G   +    I    R      L          +            D     +
Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAIHRDGHTLPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +       G+      I  DIT++ ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  +   +++ID+D +K +ND LG A GD VL   + R+ E +    +++RL G+
Sbjct: 323 -----DAQMSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +  K     +A+   I  PI   +  I + ASIG +  + +     +ML 
Sbjct: 378 EFVVFLFDTADPEKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAKWRNTGCEE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ +++ +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957
            + A+ I        +    CD  Q      P+  +    + +    
Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHDFTERYISSHN 723


>gi|307296880|ref|ZP_07576697.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306877601|gb|EFN08828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 704

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 148/583 (25%), Positives = 251/583 (43%), Gaps = 12/583 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
              L G  V+  +         +    E   L V  +  + W  D     +  T      
Sbjct: 96  AGRLTGDMVMVDLTGEQAEIGRLRRSMENLRLIVEYNPQLPWIADPDGRIIDFTDRWLEN 155

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            GL      G    WL   H +D       +   +           R+   D Q+ WM  
Sbjct: 156 SGLEREEAEGN--GWLATTHPDDIGPLTQRIGHSLTT-GEPFDVRVRLMVND-QYRWMRA 211

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           +  P  + +G I+R+ G   DI E     E I  NA  D+LT +PNR  F   L   L  
Sbjct: 212 QAYPRRDEDGRIIRWYGYTEDIHESVLIEEQIRWNAEHDSLTKLPNRAMFNACLDKALAD 271

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           + TD   +  V ++DID +K +ND++G   GD++L S   R+ ++     ++ARL G+ F
Sbjct: 272 AMTDFK-KVGVFLLDIDNFKDVNDLMGHHAGDELLKSFASRLRDVFAEDAVVARLGGDEF 330

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I++    N  ++A  A  +  +I        R +    SIG AS+      ++E+L++A
Sbjct: 331 AILVKDVENRAQLAALANRIL-TIRETFFSAGRSLECRVSIGVASFPEDGRVATELLRHA 389

Query: 678 ELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LA+Y AK  G   ++ F  S      +RV +      AV +  +   Y P + L   E+
Sbjct: 390 DLALYRAKSLGRGRMQMFEPSLLEDMQERVAMINRARTAVRDGTIISYYQPKVSLQTGEL 449

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EAL++W        S +E     ++  +   I   M  ++  D+ +WR +       
Sbjct: 450 VGFEALLRWRDSCGTIRSPAEIYAAFDDHDVADMIGQTMTSQVFADMAAWRARGLTLG-H 508

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKI 854
           + IN++S +L        +   + +    P  I++  +E V +G   +  R  +  L + 
Sbjct: 509 VAINVSSAELRRERFAGRLIETMERFSIEPDAIEIEITEGVFLGAGSDTVRRSIDELHRC 568

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
            I L LDDFGT  + LS+L  +P  T+K + S ++G T  E   AI+ ++I + + +   
Sbjct: 569 HIPLALDDFGTGFASLSHLRSLPVSTLKIDRSFVSGVTAREGDAAIVSALITLGRALNMK 628

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++A+ +       +L  MGCDY Q  +   P    +I  L+  
Sbjct: 629 VVAEGVEEADQSIKLKEMGCDYAQGFYFGRPTPSENIPALIHS 671


>gi|254245147|ref|ZP_04938469.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192]
 gi|126198525|gb|EAZ62588.1| hypothetical protein PA2G_06035 [Pseudomonas aeruginosa 2192]
          Length = 818

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+    G+I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 333 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I  +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796


>gi|238755577|ref|ZP_04616914.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia ruckeri ATCC 29473]
 gi|238706177|gb|EEP98557.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia ruckeri ATCC 29473]
          Length = 669

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/559 (22%), Positives = 247/559 (44%), Gaps = 12/559 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                G     + G     L         + R  
Sbjct: 113 EQVVSEANSVIVILDKNGSVQRFNRLSEEYTGKKEQDVIGKNVFELFMTQKEGASS-RKN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F   R    + E  V     +  ++       S S  + L  I    DIT+++++ E
Sbjct: 172 IEGFFK-RGASYEVERWVNTMKGKRLFLFRNKFVHSGSGKNELFLICSGTDITKERRAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  +R+ + +    T       ++ +D+D +KK+ND  G   
Sbjct: 231 RLRVLANTDMITGLPNRHAIHERINSAI---QTRGESSVGIIYLDLDNFKKVNDHYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   LK  ++LARL G+ F +++ +  + +++ + A  +   +  P  +
Sbjct: 288 GDRLLKDVSLSILSCLKENEMLARLGGDEFIVLIEN-TSIIELEETAQRILDQMRAPFRI 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
              E+    SIG A       T   ++++A+ AMY AK  G      F     +   + +
Sbjct: 347 GLIEVYTGCSIGIALCPQHGETLENIIRSADTAMYTAKELGKRTYSIFSQEMNKKVSEYM 406

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L   +E  +L + Y P I     E+V +EAL++W   + G I   EF+  AEE  
Sbjct: 407 WLDTNLRKGLEQHQLIVFYQPKISTRTGEVVSVEALVRWSTTERGLIPPIEFISYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L+   +  + W+ +     + I +NI+++ L+D E+       +       
Sbjct: 467 LIAPLGQWVLQTAMQQAVDWQKKG--IKLRIAVNISARQLVDEEIITAFIKSLESCGIQS 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S I +  +ES ++ +   +  ++ +L+ +G  + LDDFGT  S LS L  IP D +K + 
Sbjct: 525 SPIDVELTESCLIEDENAAINIIKQLKALGAEVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584

Query: 886 SLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G  + +   +++R+I  +A+ ++  +IA+ +    + + L  +G D  Q    A P
Sbjct: 585 SFVRGIDKNKVAQSLVRAITVVAETLQMRVIAEGVETAAEEEFLNSLGVDEKQGFLYAKP 644

Query: 944 LGFNSILKLLKERFPLVKN 962
           +    +   L +  P + N
Sbjct: 645 MPAEELEHWLSKYTPHLPN 663


>gi|299067929|emb|CBJ39143.1| putative integral membrane sensor protein; putative GGDEF, MHYT and
           EAL domains [Ralstonia solanacearum CMR15]
          Length = 701

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 151/725 (20%), Positives = 278/725 (38%), Gaps = 67/725 (9%)

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG-------YITFSGIACIAILFC 298
               L+++  C  I  S + +             A                      +  
Sbjct: 6   YHPLLVLFSLCVAILASYTALDMAGRIATARGHAAHWWLGGGACAMGLGIWSMHFVGMLA 65

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG---LW 355
            S   P+       +    I +  + F ++   +       L    +L+           
Sbjct: 66  FSLPIPLGYDPWITLASLLIAVALSAFALWLVCQRRLPWPRLAGGALLMGAGVASMHYTG 125

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           MA  +     +  PAL    V+I IL     +         S+ + +     ++ +  + 
Sbjct: 126 MAAMRMSPGILYDPALFCLSVVIAILASGAALWIAFRLRRQSRHVRAKRAGAAVVMGLAI 185

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-----RNWLPYIHINDRDNFRTILDS 470
             +           T    A   G   GS+ G         WL  +          +L  
Sbjct: 186 VGM---------HYTGMAAA---GFPLGSLCGAAGGGVSAEWLALVI---IVVTLAVLAM 230

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +      L+ E R                               A   T   K+   + 
Sbjct: 231 ALLISVLDLRMEAR------------------------------TAVLATSLAKANRELA 260

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  DNLT + NR    DRL   +  +         +M +D+D +K +NDV G  VGD 
Sbjct: 261 YLALHDNLTKLSNRLLLEDRLEQAIQAAGRTRG-SFALMFLDLDGFKAVNDVYGHHVGDL 319

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  + +RI   ++  D +AR+ G+ F  +L S          A A+  ++  P  +   
Sbjct: 320 LLADVAQRIVACVRQQDTVARVGGDEFV-VLASVGEPADAGTLADALLAAVRAPFLVDGY 378

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIK 708
           E+ V+ SIG A +        ++L NA+ AMYHAK  G +    F  S       ++ + 
Sbjct: 379 ELRVSTSIGIALYPDDGAGQHDLLTNADAAMYHAKGMGRDTYCFFEASMNANVHQQLQLV 438

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +DL LA+E  EL L Y P        +VG+EAL++W HP+ G +    F+ +AE+  +I 
Sbjct: 439 QDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPEHGLVPPDAFIPLAEKTGLIV 498

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++L+   R +  WR +       I +N+++       L + ++  +++    P  +
Sbjct: 499 PLGAWVLDEACRQMAQWRRE-GRTNWSIAVNLSAVQFAHAALVDTVRDTLARHALEPQGL 557

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P   +K +   +
Sbjct: 558 TLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLPASELKIDRGFV 617

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  +  AI+ +++ + + +   I+A+ +  E     LTR+GC  +Q + +  P+  
Sbjct: 618 RDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHALQGNLLGRPMTA 677

Query: 947 NSILK 951
            ++L+
Sbjct: 678 QALLE 682


>gi|284042297|ref|YP_003392637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946518|gb|ADB49262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 994

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/619 (21%), Positives = 255/619 (41%), Gaps = 27/619 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLV-----------LIVILIGFTVIQHVLATGYFSQ 398
             I +   I  R    +   A V G+V            IV  +   V     A     +
Sbjct: 374 GTITVTSRIRHRDGRYVWIEARVRGVVDPATGEMKEGQAIVRDVSERVASEA-ALRESVE 432

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            I +  +R   A   +   +   D+    +     +  I G     +     ++    H 
Sbjct: 433 RIAAAEQRFRTAFEAAPIGMALSDLEGRFIQVNDALCAITGYTREELE--EMSFGELSHP 490

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +    ++ S +   +     E R      Q  W+ +    +  ++G    ++G   D
Sbjct: 491 ADVEREAEMMASLLSGEQSTYWMEKRYVDVVGQVVWVAVHATLVRAADGSPQHFLGQIQD 550

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E+ +    +   A  D LTG+ NR+SF   L   +             +V+DID++K 
Sbjct: 551 VSERVRYEAQLQHMADHDPLTGLLNRRSFERELNQHIHRVERY-GAEGAALVLDIDRFKH 609

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD+++V + + +   L+  D+LARL G+ F ++L       +    A ++ 
Sbjct: 610 INDTLGHNVGDELIVKVAQTLRSRLRDSDVLARLGGDEFAVLLPK-GGQQEAEAVAESIL 668

Query: 639 KSIAMP--INLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            S+     +    R   +T S+G A +     +++ ++L NA+LAMY AK  G +   +F
Sbjct: 669 ASVRAQSVLTTAGRRRPITTSVGIALFGETGGLSAEDVLVNADLAMYDAKEAGRDRAATF 728

Query: 696 RVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                       R+   E +  A+E     L   PI+ L    +   E L++    +   
Sbjct: 729 SSQERGASRMKARITWAERIRDALEEDRFTLYAQPIVELRSGAVRQHEVLLRMLDEQGEV 788

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I  + F+ +AE   +++ I+ +++ R  +++   R           +NI+     D +L 
Sbjct: 789 IPPAAFIGVAERFDLMQEIDRWVVARAIKEMGQQRRAGRDLVFE--VNISGASTGDPDLL 846

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  + +    P  + L  +E+  + N  R++    RL ++G    LDDFG       
Sbjct: 847 TIIERELRENEIDPINLVLEVTETTAVANIPRAQEFAARLAELGCRFALDDFGAGFGSFY 906

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL ++PFD +K +G  +    +++    ++R+ + +A+ +    IA+ +  +  ++ L  
Sbjct: 907 YLKHLPFDILKIDGEFVRSCTTSQTDQLLIRAAVEIARGMGKETIAEYVGDDETVELLRT 966

Query: 930 MGCDYIQDSHVASPLGFNS 948
           +G DY Q  H+  P     
Sbjct: 967 LGVDYAQGFHLGRPAPLEQ 985



 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 31/247 (12%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA----------TGYFSQG 399
           W + +            I  +     + + +LI     +   A                 
Sbjct: 240 WVLAIGRPEPSNAVTWAIAISGTVLTIALGLLIWQAARRERYALDLVEERMAERDRAEAE 299

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +  +R  L    + D++  +D        +P    ++G     + G  R    ++H +
Sbjct: 300 LRAAEQRHRLLADNATDMILVFDPSGVATYVSPASRELMGYDPEELVG--RQPREFVHPD 357

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIAND 518
           D D       + V  + G +    R+R  D ++ W+  R+R + +   G++     I  D
Sbjct: 358 DTDEVVGA-RTRVAEQGGTITVTSRIRHRDGRYVWIEARVRGVVDPATGEMKEGQAIVRD 416

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVIDID-KY 576
           ++E+  S   +  +               ++R+        T  +     + + D++ ++
Sbjct: 417 VSERVASEAALRES---------------VERIAAAEQRFRTAFEAAPIGMALSDLEGRF 461

Query: 577 KKINDVL 583
            ++ND L
Sbjct: 462 IQVNDAL 468


>gi|159897514|ref|YP_001543761.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890553|gb|ABX03633.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 704

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/577 (23%), Positives = 257/577 (44%), Gaps = 8/577 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            + I+  L      Q +       S  +    D +   DI        P  +++L   + 
Sbjct: 113 LSAIEMGLYRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFANPTASSLLNRPND 172

Query: 444 SMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           ++ G  I + +  +    +  ++  L   +      +    ++   D     +   I  +
Sbjct: 173 ALIGQFIGDVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQI 232

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +  I   + +  D+ +   + E I   A  D LTG+ NR  F++RL  ILD      
Sbjct: 233 REEDEAIAGIVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLH- 291

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V+ ID+D++K IND LG  VGD +L+ + +R+   ++  D++ARL G+ F I+L 
Sbjct: 292 -HHHAVLFIDLDRFKIINDSLGHIVGDKLLIQVGQRLERCIRSHDLVARLGGDEFTILLD 350

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N+   +      +   +A P ++   ++   ASIG            E+L++ + AMY
Sbjct: 351 GVNDIHDVLRVTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHEVLRDVDSAMY 410

Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G      F           + ++ +L  AVE  EL L Y PII+L   E+ G EA
Sbjct: 411 RAKSQGRGCRAVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEA 470

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILIN 799
           L++W+HP  G I  + F  IAEE  ++  I   +L    + I +W+++    PP+ + +N
Sbjct: 471 LLRWNHPTQGVIGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVN 530

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
              +      L + +Q+++++T      +    +E V+M    R+  ++  L  +G+ + 
Sbjct: 531 FTHRQFFQANLIQQVQSILAETGMPARHLCAEITEGVMMQ-SNRAVEVMHELHDLGVQVH 589

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           +DDFGT  + LS L   P D +K + + +   S   + +I + I  MA+++   ++A+ +
Sbjct: 590 IDDFGTGYASLSLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSLGCAVVAEGV 649

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 + L  MGCD+ Q    +  L       L++ 
Sbjct: 650 EDAQTAQMLIEMGCDFGQGWWYSKALPPEEARVLIRN 686


>gi|332993627|gb|AEF03682.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alteromonas sp. SN2]
          Length = 701

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 117/578 (20%), Positives = 262/578 (45%), Gaps = 11/578 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + +       +++ +  + E+ ++ +    D V   D         P    + G      
Sbjct: 124 MQRQKSQLSIYNERVLEEKEQLNITLNAIADGVIATDADGIVTFINPVAQRLTGFNEFEA 183

Query: 446 HGP-IRNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G  + + +               L +    R   + +  ++ +   +   +     P+ 
Sbjct: 184 CGRMVDDIMELRDATTNAGVINPALYTMKVKRPVAMAFNVKLVSKQGKECRVEDTASPIL 243

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G +   + +  D++E       +   A  D LTG+PNR    D++   ++ +    +
Sbjct: 244 DTQGRVKGSVVVFQDVSESVAMAVQMTHVANHDQLTGLPNRVLLHDKIVQSINRTDKAKH 303

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +++IDID +K +ND LG  +GD +++S+++R+ +       +AR+ G+ F  +L  
Sbjct: 304 -SVALLLIDIDNFKYLNDALGHKIGDSIILSISKRLQQACGPSATVARVGGDEFACLLTH 362

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +    +   A+   +S   PI++  +   ++ SIG + +     ++ EM+++++ AMY 
Sbjct: 363 VSGLS-VDGVAMNCLQSAREPIHIDGQYHQLSLSIGISLFPQDASSAEEMMRHSDTAMYR 421

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G +    F      + R  ++ +  L  A++N+ L + + P   L   ++VG E+L
Sbjct: 422 AKATGKDKFSFFSKDLKLAMRKRVEMEVKLRTALDNNSLAIFFQPKYDLNLNKVVGAESL 481

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++        +S  EF+ ++EE  +I  +   +L +    I    +     P  I +N++
Sbjct: 482 VRLIDDDGSIVSPDEFIPLSEETGLIHRLGKQVLVKSCEFIAKCVEA--NEPFKIAVNVS 539

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ + +    + +  +I  T   P  ++L  +ES +M + +++R +L  L  +G+SL LD
Sbjct: 540 AQQIANPSFAKEVGEVILSTGIDPGLLELEVTESALMADFDQTRNVLLALSSLGLSLALD 599

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   P + +K + S +     +  A  I+ +I+ +   +   ++A+ + 
Sbjct: 600 DFGTGYSSLSYLRQFPLNVLKIDRSFIKDMDTEPQALDIVTAIVRLGNCLNMVLVAEGLE 659

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKER 956
            E+    L ++GC+Y Q  ++  P+  +    + L ++
Sbjct: 660 TELQFHSLRQLGCEYGQGYYMCKPISEDEFTTRFLNQK 697


>gi|328469301|gb|EGF40247.1| sensory box/GGDEF family protein SrcC [Vibrio parahaemolyticus
           10329]
          Length = 774

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+  + +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + + P      E  +T S+G + +      + ++L  A++AMY  K  G +    +  +
Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ N  L + Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  +  F +++       W+      P+F+ +N +S      + L   ++
Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACHQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  + +    +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK +   I+A+ I  +  +  L  + C+
Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + P+      +LL +
Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770


>gi|46579130|ref|YP_009938.1| GGDEF domain/EAL domain-containing protein [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46448543|gb|AAS95197.1| GGDEF domain/EAL domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 502

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 229/483 (47%), Gaps = 6/483 (1%)

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G  ++E+    +        + + P+      +L     A DI+E+K++   I   AF D
Sbjct: 8   GNRRFEWIFMRSGGSEVPCEVTLSPVMQRGRRMLHL--TARDISERKRNEAQITHLAFHD 65

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+ NR  FLDRL   +       +    V+ ID+D++K IND LG A GD +L  + 
Sbjct: 66  SLTGLANRVLFLDRLAHAIATCRRAPDRNFAVLFIDLDRFKVINDSLGHAAGDGLLSIIA 125

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             I   ++  D +AR+SG+ F +++    +       A  + + I  P+ +   E+ ++A
Sbjct: 126 SAIAANIRETDTVARISGDEFTVLVHEPPSPRFAIKMARRILERIKQPLTIEGFELVISA 185

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714
           S+G     S      ++L++A++AMY AK  G + +  F  R+       + ++ DL  A
Sbjct: 186 SMGIVIGNSGYTDPHQVLRDADIAMYKAKRAGKDKLRVFGSRMHEQALHAMRLENDLRQA 245

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++N +L   Y PI+ L    + G EAL +W HP  GNI  S F+ IAE+   I  +   M
Sbjct: 246 IDNGDLSCHYQPIVNLESGALEGFEALARWQHPTLGNIPPSTFIPIAEDTGRIIPLGRAM 305

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +      S R         I +N++ +  L  +    ++A +  T   P  + L  +E
Sbjct: 306 LHKACAFAASIRGTLPQGDPVIHVNLSPRQFLSRQRLREVEAALDATGLPPELLVLEITE 365

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893
           S++M NP  ++ ++  L++IG+ L+LDDFGT  S L  L   P D+VK + S +    + 
Sbjct: 366 SLLMENPRVAKSIMAGLKEIGVRLSLDDFGTGYSSLGSLQDYPLDSVKIDRSFIRAMNDG 425

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                I+R+I+ +  ++    I + +   +    L   G   +Q    A P+       L
Sbjct: 426 RDAEHIVRAILKLVSHLRLEAICEGVETTMQAANLMAFGATRMQGFLFAKPMPSEKARSL 485

Query: 953 LKE 955
           L+ 
Sbjct: 486 LER 488


>gi|254507911|ref|ZP_05120040.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           parahaemolyticus 16]
 gi|219549147|gb|EED26143.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           parahaemolyticus 16]
          Length = 774

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 216/444 (48%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +++  +K S E +   A  D+LTG+PNR    +RL   L  +    +    VM ID+D +
Sbjct: 331 SEVERRKASEEELAFQAKHDSLTGLPNRVYGSERLALELSRAERVGS-NVLVMFIDLDHF 389

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND +G  VGD+VL     R+   ++  D+LAR+ G+ F +++    ++     FA  
Sbjct: 390 KQINDSMGHFVGDEVLKLAAERLQNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFATT 449

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P      E  ++AS+G + +        ++L  A++AMY  K  G N    + 
Sbjct: 450 VLSVFNEPFVWQNHEFFLSASVGMSMYPQDGGNVEQLLACADMAMYRVKQDGRNAFCFYD 509

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +     + ++  L  A+ ++ L L Y PII L   +IVG EAL++W+  K+G ++ 
Sbjct: 510 HNMNQDLQRFLELESRLRHAISHNLLELYYQPIIELDSGKIVGAEALMRWNDDKFGFVNP 569

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813
            EF+ IAE+  +I  +  F + +  +    W+  A   P+F+ +N +S        L + 
Sbjct: 570 EEFIAIAEKNGLIHQLGDFAIRQACQQAAHWQSVA---PLFVSVNFSSVQFRYCERLFDQ 626

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + ++        +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL
Sbjct: 627 IKQHLEESTLPAEMFDVEVTESLLFNHSGDLMEMLHNLRSLGAKLTIDDFGTGYSALSYL 686

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +      E    ++  II MAK +   I+A+ I  +  +  L  + 
Sbjct: 687 QKFPFDRLKIDRSFLQNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKNLN 746

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C++ Q  H + PL       LL +
Sbjct: 747 CEFGQGFHYSRPLPAKDFEALLAK 770


>gi|307726091|ref|YP_003909304.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307586616|gb|ADN60013.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 647

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 223/438 (50%), Gaps = 5/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR++F D L   L  ++  D  R  +M++D+D +K +ND L
Sbjct: 190 RAEKDLEYLASTDPLTDLPNRRAFYDELKARLHRASAADK-RVALMMVDLDNFKTVNDTL 248

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +   +  +++  D+++R+ G+ F +++  + + ++    A  + ++++ 
Sbjct: 249 GHGAGDELLKQVAEALRNVVRPNDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNLSR 308

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  L   +  VTAS+GF+ +       +E++ NA++A+Y AK RG +    F+       
Sbjct: 309 PFVLHGSDSAVTASVGFSVYPEDTGEMAELVSNADIALYSAKSRGKSIAVEFQSEMTAEA 368

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  I+ +L  AV+   L +VY P    +   ++G EAL++W HP  G IS +EF+ IA
Sbjct: 369 QRRARIEAELRRAVDQDGLEIVYQPQFDCLSGRLLGAEALVRWTHPSEGPISPAEFVPIA 428

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I A+  ++L R  RD  SW        + + +NI+++ L D      +   + K+
Sbjct: 429 ENSDLIVALGRWVLWRACRDAASWNA-GREASVHVAVNISARQLRDEGFTREVCDALQKS 487

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S ++L  +ES +M N       +  LR  G+ L+LDDFGT  S LSYL   P  ++
Sbjct: 488 GLPASLLELELTESQLMSNMSVGIQAMQELRAAGVRLSLDDFGTGYSSLSYLQSFPVHSI 547

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +         I+ +II MA +    ++A+ +     ++ L    CD +Q     
Sbjct: 548 KIDRSFICPLPNGGQPIVTAIISMAHSFGLLVVAEGVEYPAQLEWLCDARCDVVQGFLTG 607

Query: 942 SPLGFNSILKLLK-ERFP 958
            P+    +L  ++ E+ P
Sbjct: 608 RPMSLQQLLATIRAEQAP 625


>gi|289625137|ref|ZP_06458091.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648694|ref|ZP_06480037.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868009|gb|EGH02718.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 703

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 254 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 432 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 671 LGYPLPAEQFLDEIRA 686


>gi|294649933|ref|ZP_06727325.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824162|gb|EFF82973.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 949

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 254/565 (44%), Gaps = 16/565 (2%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---P 454
             D ER  L       + + ++  D   + +   P    I  L    + G     +    
Sbjct: 391 RKDQERLKLSASVFEQASEGIFILDENFNYIEVNPKYEQITELDKQVILGKQLFEITKQN 450

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H     NF+  +   + +     + EF+      +  ++ + I  + +    ++ YIG
Sbjct: 451 KLH---HQNFQLSILDTLAHE-HEYEGEFQETYHSEKSCFLWMHINAVKDEQDRVINYIG 506

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D TE+K   + +      D LT +PNR  +  +L   L   A        V+ ++ID
Sbjct: 507 IVSDQTERKHQEQRLSYLTNYDTLTDLPNRFYYQQQLHQYLVNEAAIQ--HLAVIRLNID 564

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           +++ +N+++    G+++L  + +R+        ++A LS + F II         I    
Sbjct: 565 RFRTLNELVSNQAGNELLKQVAQRLRISNIDALLVAHLSADDFAIIYEMSPLHPPIHQLC 624

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++ + P  + ++E  V+ SIG A +         +  +AE A+  AK  GGN +  
Sbjct: 625 NNIVENFSQPFYIADQEYFVSVSIGVAMFPEHGRQVDNLNTHAEQALNEAKRLGGNTIRY 684

Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        +    ++ DL  A++N+EL + Y P +   D  + G EALI+W+HP  G I
Sbjct: 685 YSNERANLAAQYSDLELDLRKAIQNNELVVYYQPKMTTHDNLVNGFEALIRWEHPSKGLI 744

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AE   +I  I  F+L + A+ +  W +    P I I +NI  + +L  +L  
Sbjct: 745 MPDIFIPLAESTSLISDIGQFVLHQAAKQLQRWIE-LGYPQIHIAVNIVVQQVLRGQLLH 803

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++S+   S   ++L  +ES  + N E  + +L  L+   IS+ LDDFGT  S L+Y
Sbjct: 804 DVDTILSQYKISGHNLELEITESAFLENTETVKTVLEALKDRHISIALDDFGTGYSSLAY 863

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L   P DT+K + + ++     +  AI+ ++I M K I   ++A+ +  E     L +  
Sbjct: 864 LTEYPIDTLKIDRAFISKIGNSKQDAIVNAMIAMGKTIGLKVVAEGVETEAQRDYLQKQN 923

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD +Q    A PL      K L++ 
Sbjct: 924 CDILQGYLFAKPLTALDATKFLQQH 948



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 115/410 (28%), Gaps = 53/410 (12%)

Query: 165 ISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAM 224
           +    L      +   Y   + SF L    ++G+  +L   L   +     ++     ++
Sbjct: 4   VQKQGLAPFIYTDQINYSSHIRSFVLS---VLGIC-VLDYALFGLFYSFTPNIFTAWISI 59

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
             V L        F  K  +     +       +I   S+ ++     +    +      
Sbjct: 60  TAVFLLIFFFLCRFSLKCYS-SPAFIKRSHVLFQIVCFSTGLLLGINSIIITYYLIHEVP 118

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIA---RITLASIVLYYTYFIIYHGMKGYERAVLLI 341
                         ++  + +    +    R      +      II H +    +  L  
Sbjct: 119 QLTGSHILTLTALLLTTSHIIALTFLTQHIRYFFLFFLPSVLPLIISHLLSRDHQHTLFY 178

Query: 342 PAWILIFIWFIGLWMAITKRL------------------DNDIIQPALVGGLVLIVILIG 383
            A+   F   +    A  K                     ++     L   L   V    
Sbjct: 179 LAYYFTFFATLLCAHATFKIHKHLSQVLEKNKQLVDVAEQHNQWTEELCQQLQHEVNKSK 238

Query: 384 FTVIQHVLATGYFSQGIFS------------DGERQSLAV--LGSGDIVWDWDIVRDRV- 428
               Q         Q +              +  RQ+LA     +G   W+W++    V 
Sbjct: 239 DIEAQLQFNNHLLEQKVRDRTYDLTQMNESLEEHRQNLAFAHETAGIRPWEWNLENQTVG 298

Query: 429 ---TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
              T +  +                     +H +D +  +  L   +     R +  +R+
Sbjct: 299 VTNTHSQAVKR-------DSENHYTLLHKIVHPDDIERVKNALYHHICGETLRYEETYRI 351

Query: 486 RAADNQFHWMIIRIRPMSN--SNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  + ++ W+    + +     +   LR +GI  DI +++K  E +  +A
Sbjct: 352 KRPNGEWSWIHDVGQVIQRHPEDQTPLRMVGIHRDINQERKDQERLKLSA 401


>gi|320328997|gb|EFW84996.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 653

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 204 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 262

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 263 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 321

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 322 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 381

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 382 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 441

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 442 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 500

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 501 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 560

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 561 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 620

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 621 LGYPLPAEQFLDEIRA 636


>gi|323139092|ref|ZP_08074150.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
 gi|322395656|gb|EFX98199.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
          Length = 763

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 152/774 (19%), Positives = 297/774 (38%), Gaps = 51/774 (6%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
             + TL  GI+ G+ + +       ++    +  +   A+   +  Y             
Sbjct: 25  DTTETLIAGIVFGLLAPMIA-----WLSTGEATYLALVALMSCIGAY------------- 66

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                         + LS +            +W  +      S +A +     +  +  
Sbjct: 67  -----------RIHVLLSHNHTPIAERRRDARKWEHRYTIGAVSFMALLGFSTAI-LFSQ 114

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
             +  I    +  +          +  +       ++   + + I       ++     +
Sbjct: 115 HHSEMIGYYGVIIMTGVTGNLAARNAARPNIVFWQVVGTCMPLAITVF-FSFSVWYWGIS 173

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             +         L V      +  H+ +     +      ++ SLA+      +   D  
Sbjct: 174 AFLIFG-----ALSVFKTTKFLKGHLESALRNGRDASRQRQKFSLALNSMTHGLCMGDSE 228

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            +       +    G+ + +            H   R    + +++ V     R +    
Sbjct: 229 LNITVVNRRVIEFFGIVAAT---TPIRLEALAHAIGRSVAMSSVETTVF--TERWKRHAA 283

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +  A+   H +  R         +   +I +  D+T Q+++L  I   A  D+LTG+PNR
Sbjct: 284 MPHANVFTHKIGERFFDFHCERAEGNAFITVIEDVTAQQRALREIERIAHFDDLTGLPNR 343

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F D L   L        L+  ++ ID+D++K++ND LG  VGD +L S+  R+     
Sbjct: 344 YQFQDTLGENLVQLNER-GLKAALINIDLDRFKEVNDTLGHTVGDQLLASVGARLSACAP 402

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
            P ++ARL G+ F +++ +      I   A  M   +  P  +    I++ ASIG A+  
Sbjct: 403 APHMVARLGGDEFCVLVRATRELPDIDALAQRMIAEMNRPFFIDGNTISIGASIGVAAAP 462

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
               T   +LK ++LA+Y AK         F        S +  I+ +L  A+E  +L +
Sbjct: 463 QDSETPIGLLKCSDLALYRAKSGQRGTAVWFTPQMQEALSRKREIETELRHALEADQLIV 522

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI+      +V +EAL++W HP+   +S  EF+ +AEE  +I  I  + L+R   D 
Sbjct: 523 HYQPIVDSRRGAVVAMEALLRWRHPERCLVSPVEFIPVAEETGLIVDIGAWALKRACSDA 582

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           ++W        + + +N++ +     +L   + A IS+T  SP R++L  +E+ +M   +
Sbjct: 583 MAWPAH-----VRVAVNLSPRQFHQTDLVTTIAAAISETGLSPDRLELEITETTLMAQTD 637

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900
                +  +  +G+ L+LDDFG   S L YL   P   VK + S       + K  AI+ 
Sbjct: 638 DVERKVRAIDALGVRLSLDDFGAGYSSLGYLDRFPVKKVKIDQSFARQAIDSPKTQAIIG 697

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +I  +A+++   ++A+ +     +  +       IQ    + P     +   L 
Sbjct: 698 AISLLARDLGIDLVAEGVENHDQLAFMASKNIFLIQGYLYSKPRPIEELAPHLA 751


>gi|109898570|ref|YP_661825.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
 gi|109700851|gb|ABG40771.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
          Length = 780

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 139/441 (31%), Positives = 227/441 (51%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ + + I   A  D LT +PNR    + L   L+++  +   +  V+ +D+D +K IN
Sbjct: 339 ERQNNSDLIWHQANFDELTQLPNRNIMGEHLKQALNVAKRNQ-TQVAVLFLDLDNFKDIN 397

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +VGDD+LV   +RI + ++  DI+ARL G+ F +I+    +   +   A  + K 
Sbjct: 398 DTLGHSVGDDLLVDCAQRIKDCIRHKDIVARLGGDEFVVIINDIVDFSGLEKTAQKILKG 457

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P +L    +  +ASIG   +       S +LKNA+ AMY AK  G N+   +  +  
Sbjct: 458 LSRPYHLQSEIVHTSASIGITIYPDDADDVSSLLKNADQAMYGAKAIGKNNYHYYTKNMR 517

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ +  DL  A++N E ++VY PII L+D+ I   EALI+W HP  G +   +F+
Sbjct: 518 DAAVKRMALITDLRHAIDNDEFFIVYQPIINLLDQSITKAEALIRWRHPIRGLVGPDDFI 577

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM-QAL 817
            +AEE  +I  I+ ++ E++ RD+  WR     P + I IN +     D E C  +    
Sbjct: 578 PVAEETGLIIDISDWVFEQVCRDVCQWRQAL-CPTLQISINTSPVHYTDPEHCITLWLEK 636

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +      P  + L  +ES++M   +     L + R+ G+ + LDDFGT  S +SYL   P
Sbjct: 637 MLINRTPPQAVLLEITESLLMDANKSISTKLFQFRQAGVDIALDDFGTGYSSISYLKRYP 696

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +   TE      +  +II MAK +   ++A+ I  +     L +MGCDY 
Sbjct: 697 TDFLKIDKSFVHSMTEVSNDKVLCEAIIVMAKKLGIKVVAEGIETQEQYHILQKMGCDYG 756

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A PL  ++   LL++ 
Sbjct: 757 QGYLFAKPLEHHAFNALLQQH 777


>gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856526|dbj|BAD40684.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 720

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 113/571 (19%), Positives = 231/571 (40%), Gaps = 18/571 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            +   V+Q +       + +    ER  LA   +   V   D     +     +  +LG 
Sbjct: 152 TLFLAVVQDLTERKETERRLKESEERFRLAFEHAPIGVALLDAGGAILEVNRALCAMLGY 211

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A   + G     L   H                 +      E  +R  D +  W  +   
Sbjct: 212 APAELAGRPLTDLAA-HPG-------AFPDPAHLQSAGPAPEVALRHRDGRTIWAQLSCA 263

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            ++    D   +I    DIT++K+  E ++  A  D+LT + NR+ F   L   +  +  
Sbjct: 264 ALNGWQSD-TAFILQLQDITDRKRYEEELVRLAMVDSLTDLANRRRFQQELEEAVTEAER 322

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ ID+D +K IND LG   GD+VL  +   +   ++  D  ARL G+ F ++
Sbjct: 323 TGR-SGALVFIDLDMFKHINDTLGHPAGDEVLRQVATILRSAIRPGDTAARLGGDEFALV 381

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L + + +         +           E  +++TAS+G   +     +  E++  A++A
Sbjct: 382 LRNADGARAAQVADRLLTAIRRARFGGAEAPVSLTASMGVVLFPEHGRSVRELMNRADMA 441

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +  AK  G +    F         +      ++ +  A+E     L Y PI+ L    + 
Sbjct: 442 LLEAKEGGRDSWAPFTPEGRWQREMQAQLLWRQRISRALEEDRFVLHYQPILDLRRNAVT 501

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EAL++        I   EFM +AE   +I+ ++ ++LER  R++   +       +  
Sbjct: 502 RHEALLRMVGDGGELIFPGEFMAVAERFDLIQQVDRWVLERAVRELAELQRAGRRTVLE- 560

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ + L+D  L   ++  ++     P+ + L  +E+  + + +++   +G ++ +G 
Sbjct: 561 -VNLSGRTLMDPVLPAVIRRGLTLRDVDPASLVLEITETAAISDVDQAERFIGEMKALGC 619

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
            L LDD G   + L +L  +P D +K +G+ +           ++R++  + + +    +
Sbjct: 620 RLALDDVGAGFASLYFLKRLPVDYIKIDGAFIRNLPHDTADQHLVRALASVCRELGKQTV 679

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           A+ +     ++ +   G DY Q   +  P  
Sbjct: 680 AEFVDSPKTLQVVREYGIDYAQGYLIGRPGP 710



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +     R +  +  +       D  +  V        + G     + G   + 
Sbjct: 35  AADVQRALARSEARLAGMLEITPAATVAVDADQRIVLFNDMAEQVFGYTREEVLGRPLDV 94

Query: 453 LPYIHINDRDNFRTILDSF----VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           L  +        R  +  F    V  RR   + E   R    +     I I  ++  +  
Sbjct: 95  L--LPPETAARHRQHVTRFGLGPVRQRRMAERQELTARRKSGELFPAQIAIARVAMDDET 152

Query: 509 ILRYIGIANDITEQKKSLEG 528
           +  ++ +  D+TE+K++   
Sbjct: 153 L--FLAVVQDLTERKETERR 170


>gi|34557329|ref|NP_907144.1| hypothetical protein WS0940 [Wolinella succinogenes DSM 1740]
 gi|34483045|emb|CAE10044.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 713

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 140/596 (23%), Positives = 261/596 (43%), Gaps = 22/596 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L +        G  V   I I  T  +         Q      E     +  + + ++ 
Sbjct: 126 YLLHSHSGQWSDGRKVKFQIAIDVTEQRLSPEGIMLEQN--QMLEVIKALLDATIEGLFI 183

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D  +  V        + G     +H   ++ L +I +  R+  +          R +  
Sbjct: 184 FDRNQKCVYANHIALNLFGYTLEEVH--SKSILDFIALGFRNKVKR-----FSQNRDQPP 236

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           YE      D     ++IR + +    G+    +    DIT+ ++    +      D+LT 
Sbjct: 237 YEVLGIKNDGSLFPIMIRGKAI--ELGEEKFRLSAVIDITKMREKENELFQIKRYDSLTS 294

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+   D L   L  S  +   R  ++ I +D++K  ND  G + GD +L  + +R+ 
Sbjct: 295 LPNRRFLEDLLKKSLHTSHQNGCYR-ALLFIGVDRFKLFNDSKGHSFGDQLLYEIAQRLK 353

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVT 655
                   LAR  G+ F ++L   + S +         A ++ K +  P  LL + I++T
Sbjct: 354 AATASMGALARFGGDEFTLLLEDGSKSEEQIRRSARQSAESISKLLQAPFVLLGQSISIT 413

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713
           ASIG  S+  +  +   ++K A  AM+HAK +G N +  F     R     ++  EDL  
Sbjct: 414 ASIGIISFKETARSPRTLIKYATSAMHHAKKKGCNTICFFEPLLQRRFEERLELQEDLRD 473

Query: 714 AVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A++  +L L Y   +R+ ++ E +G EAL++W HP  G IS  EF+ +AEE   I  +  
Sbjct: 474 AIDKEQLELFYQKQMRVNEQAECMGAEALLRWKHPARGFISPLEFIPLAEEGGYIHLLGE 533

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+   + +  W+         + INI++K+    +    +Q   ++T   P R+ +  
Sbjct: 534 WVLKHALQKLQKWQKDPQKSHWRLSINISAKEFEREDFISNVQKNFNQTPCPPHRLCIEL 593

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E +++ +PE+S   +  L  +GI  ++DDFGT  S L YL  +P   +K +   +    
Sbjct: 594 TEGILIQDPEKSIQKILALASMGILFSIDDFGTGYSSLQYLKKLPIQELKIDRCFIQNIL 653

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             E+   ++ ++I + K     ++A+ +  +  +K+L  MGC+  Q    + P   
Sbjct: 654 EDEQDQILVDTMIGIGKKFNLNVVAEGVETQEQLKKLQSMGCELFQGFLFSKPSPV 709


>gi|13473025|ref|NP_104592.1| hypothetical protein mlr3504 [Mesorhizobium loti MAFF303099]
 gi|14023773|dbj|BAB50378.1| mlr3504 [Mesorhizobium loti MAFF303099]
          Length = 808

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 151/764 (19%), Positives = 299/764 (39%), Gaps = 57/764 (7%)

Query: 224 MAWVVLGYISIDFGFLSKLVN---------LPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           +AW+++   S  FG  +               + +  +       +++ +        L 
Sbjct: 39  LAWLMIAATSTGFGIWATHFIAMLAFTPGIPSAYDPWLSVLSLAASVALTAAGMWIATLR 98

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
               H  VG     G         M+ +          + +A  +L              
Sbjct: 99  DEFEHHLVGGAVLGGGIAAMHYTGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVL 158

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDI---------------IQPALVGGLVLIV 379
            R  L   +   + +      +         I                  A       +V
Sbjct: 159 RRPSLTATSVGAVLLTLAICTLHFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLV 218

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           IL+       +    +  Q +  + +R       + + +   D     V+    +  + G
Sbjct: 219 ILVLSASALWI-DLRFRRQKL--EVDRMHGLANAAVEGLIVCD-GNRIVSANDSMGKLTG 274

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             + +++G     L   H           +          + E R R  D     + +  
Sbjct: 275 TLAATLNGTELRELFDEH---------TANDAASLAGQPWEAELRNR--DGTRIPVELIA 323

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           R + +  G     I +  DI E+KK+ E IL  A  D LTG+ NR+SF  RL   +    
Sbjct: 324 RSI-DYCGKPHNVIAV-RDIRERKKAEEEILRLAHFDPLTGLANRRSFSSRLDMEIASMN 381

Query: 560 T-------DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
                          +++ D+D++K++ND+ G   GD +L  +      +L+   +LARL
Sbjct: 382 RIANGDTGVKGRHLALLLFDLDRFKEVNDLYGHGAGDAMLQKVATCAAGVLRHGQMLARL 441

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F II  +  +       A ++  ++     +      V+ASIG A +       + 
Sbjct: 442 GGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGGGLVSASIGIAIYPLDAEDQTG 501

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++ +A+ A+Y AK  G +    F  S      D+ +++ +L  AV   E YLVY P   +
Sbjct: 502 LISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEHELRQAVVRGEFYLVYQPQKEI 561

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               +VG EALI+W HP+ G++S + F+ +AEE   I  I  ++L+    +   W++   
Sbjct: 562 SSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQIGDWVLDAACEEAARWKN--- 618

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ + +N+++  L +      +   + +T  +P+R++L  +E+ ++ +  R+   L +
Sbjct: 619 --PLTVAVNVSAVQLHNPNFSRKVHETLLRTGLAPTRLELEITETALVKDMPRALATLRQ 676

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908
           ++ +G+ + +DDFGT  S LS L   PFD +K + S +          AI+R+++ + + 
Sbjct: 677 VKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTNGQVAAIVRAVLGLGRG 736

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   ++A+ +    ++K L    C+  Q  ++  P    +   L
Sbjct: 737 LGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDL 780


>gi|262372151|ref|ZP_06065430.1| sensory box protein [Acinetobacter junii SH205]
 gi|262312176|gb|EEY93261.1| sensory box protein [Acinetobacter junii SH205]
          Length = 950

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 136/567 (23%), Positives = 252/567 (44%), Gaps = 20/567 (3%)

Query: 402 SDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            D ER  LA      + + ++  D   + +   P    + GL    +       +     
Sbjct: 384 KDQERLKLAASVFEQASEGIFILDENFNYLEVNPKYEQLTGLDKQYILNKHLFEIT---- 439

Query: 459 NDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +   +  L+  +      ++    + EF+      +  ++ I I  + + +  +L YI
Sbjct: 440 --KQTKQHHLNFHLSILDTLHQEFEYEGEFQETYLSEKTCFLWIHINAVKDESDRVLNYI 497

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI +D +E+K   + +      D LT +PNR  +  +L   L            V+ ++I
Sbjct: 498 GIVSDQSERKHQEQRLSYLTNYDTLTDLPNRFYYHQQLHQYL--VNEASIQHLAVIRLNI 555

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D+++ +N++L    G+++L  + +R+        ++A LS + F II         I   
Sbjct: 556 DRFRALNELLSNQAGNELLKQVAQRLRISNIDALLVAHLSADDFAIIYEMSPLHPPIHQI 615

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + ++ + P  + ++E  V+ SIG A +         +  +AE A+  AK  GGN + 
Sbjct: 616 CNNIVEAFSKPFYIADQEHVVSISIGVAIYPEHGRQVDNLNTHAEQALTEAKRLGGNTIR 675

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +             ++ DL  A++N EL + Y P I   +  I G EALI+W HP  G 
Sbjct: 676 YYSSERTNFVAKHTDLELDLRKAIQNKELVVYYQPKINTQNSNITGFEALIRWKHPTKGL 735

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +AE   +I  I  F+L   AR +  W+       I + +NI ++ +L  +L 
Sbjct: 736 IMPDIFIPLAESTSLISDIGRFVLYEAARQLQVWQK-LGFVHIHVAVNIVAQQILRGQLL 794

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + + A++ +       ++L  +ES  + N E  +++L  L++  IS+ LDDFGT  S L+
Sbjct: 795 QDIDAVLDQYSIGGENLELEITESAFLENTENVKMVLCALKERNISIALDDFGTGYSSLA 854

Query: 872 YLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           YL   P D +K + + ++     K+ AI+ ++I M K I   ++A+ +  E     L R 
Sbjct: 855 YLTEYPIDILKIDRAFISKIGDPKQDAIVNAMIAMGKTIGLKVVAEGVETEQQRDYLKRQ 914

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
            CD +Q    A PL  +     L++  
Sbjct: 915 NCDILQGYLFAKPLTASHATDYLQQHM 941



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 120/462 (25%), Gaps = 109/462 (23%)

Query: 210 YMVNRSSMLIPTF-AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII- 267
           ++                 V+  I ID+       +       IW   S I LS  LII 
Sbjct: 4   FIYTDQINYPNHIRLFVVSVIFIILIDYFLFGFFYSFDLNIFSIWTISSLIVLSIFLIIC 63

Query: 268 -FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT------------------- 307
            F   +    R   K          CI  L  +                           
Sbjct: 64  NFSLKHYTSVRHAKKTNLTFQLICLCIGSLLGVGSVVISQLLTKDVPHLSHSHILTLTAL 123

Query: 308 -------------ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
                            R  L   +      ++   +   +   L   A+   F+  +  
Sbjct: 124 LLTSSHIISLTFLTQHIRYFLLFFIPSVLPLVLSQIINRDQEHTLFYVAYYFSFVATLLC 183

Query: 355 WMAITKRL------------------DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
             A  K                     ++     L   L   V        Q        
Sbjct: 184 AHATFKIHKRFFQVLEKNKQLIDVAEQHNQWTEELCQQLQREVNKSKDIEAQLQFNNHLL 243

Query: 397 SQGIFSDG-------ERQ-------SLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLA 441
            Q +           ER        + A   +G   W+W++  +RV  T      +   +
Sbjct: 244 EQKVRERTYDLTKMNERLEEHRQNLAFAHETAGIRPWEWNLEENRVGVTNSHQKEVTRNS 303

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                         +H +D +  +  + S +  +  R +  FR++ ++  + W+    + 
Sbjct: 304 ----ENHYELLSKIVHPDDAERVKNTIYSHLCGQTKRYEETFRIKRSNGDWSWIHDVGQV 359

Query: 502 MSN--SNGDILRYIGIANDITEQKKSLEGILCNAF------------------------Q 535
           +     +G  LR +GI  DI ++KK  E +   A                          
Sbjct: 360 IQRNPKDGTPLRMVGIHRDINQEKKDQERLKLAASVFEQASEGIFILDENFNYLEVNPKY 419

Query: 536 DNLTGI-----PNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + LTG+      N+  F       +       +L   + ++D
Sbjct: 420 EQLTGLDKQYILNKHLFE------ITKQTKQHHLNFHLSILD 455


>gi|85714378|ref|ZP_01045366.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
 gi|85698825|gb|EAQ36694.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
          Length = 761

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 142/696 (20%), Positives = 284/696 (40%), Gaps = 41/696 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
              RW A+           +     ++        +         +   T ++     + 
Sbjct: 75  EAARWEARYQIGAVLYAVALGAWCAIALLMTDDAVAHM-----ICISVTTGYVAAGAGRA 129

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           Y R  +     + I +    +  A+  R D   I  AL+  L  + +    T +Q +   
Sbjct: 130 YGRPWIF---HLQILLTCGPMAGAMMLRADPYYIGMALLTVLYFLGLERITTRLQAIFVR 186

Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN- 451
              ++   +    +   A+      +  +D              ++ L +  +H  +   
Sbjct: 187 ALIAREREAALASQFDTALNNMPHGLCMFDADGRLGVMNYCFGEMMHLPADFVHRNVGAS 246

Query: 452 -------WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                      I   +     + L++           +     A      +    +PM+ 
Sbjct: 247 ELIAACVVAGAISSENGRAINSELENSQAGAMVTSDADLEQGRA------LSWTFQPMAG 300

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                   + +  DITE++K+   I   A  D+LT +PNR SF D +  +L+ S TD + 
Sbjct: 301 G-----GTVVLVEDITERRKAEARISHLARFDSLTDLPNRLSFRDEIERLLE-SPTDRSR 354

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ ID+D++K+IND LG   GD +L  +  R+  +L+  D +AR  G+ F +   + 
Sbjct: 355 LSALLFIDLDQFKQINDTLGHPCGDRLLCIVADRLRGMLRPEDFVARFGGDEFVVFQQNI 414

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  + A  +  + + +     +    + + ASIG A  +    T+  +LK+A++A+Y A
Sbjct: 415 QSPEEAAALSRRIVERLTERYEVDRHLVEIGASIGIALTSP-GATADNLLKHADMALYRA 473

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      FR     +      ++ DL  A+ N E  L Y P++ L    I+  EAL+
Sbjct: 474 KADGRGTFCFFRSEMAETVERRRVLELDLRKALANEEFELFYQPLVNLRSGRIMACEALL 533

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP  G IS  + + +AEE+ +I  +  ++L +   + + W +      + + +N +S
Sbjct: 534 RWNHPTRGMISPMDIIPVAEEMGLILDLGRWILRKACMECMMWPEA-----VSVAVNFSS 588

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +     ++   ++  +  +     R+++  +ES ++ N E +   L +L   G+ ++LDD
Sbjct: 589 QQFHQRDVLSEVRYALEVSGLPAHRLEIEITESSLLRNTEWTHDALTQLHSAGVRISLDD 648

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGE 921
           FGT  S LSYL   P   VK + S + G    R   +LR +  ++ ++   ++ + I   
Sbjct: 649 FGTGYSSLSYLHNFPLQKVKIDRSFLEGIDTDRPLTLLRGVARLSADLGMAVVVEGIETN 708

Query: 922 IDIKELTRMG--CDYIQDSHVASPLGFNSILKLLKE 955
             ++ L          Q    + P+    I +LL+ 
Sbjct: 709 EQLE-LISADSTVTEAQGYLFSRPVPAARIRQLLES 743


>gi|119468623|ref|ZP_01611675.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7]
 gi|119447679|gb|EAW28945.1| sensory box/GGDEF/EAL domain protein [Alteromonadales bacterium TW-7]
          Length = 1485

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 127/556 (22%), Positives = 265/556 (47%), Gaps = 13/556 (2%)

Query: 401  FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             ++ E+  +   A     D +   D      +           +    +   + ++  I 
Sbjct: 923  RANEEQAKILGEAFSQINDWLLILDDHLMPFSANNSFIRTFSDSEEFTNISPKLFIKSIG 982

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              +   F  IL             +  ++ A +  H + I +  ++ S  ++  Y+ + +
Sbjct: 983  KENCKEFAKILKKL--QPTENWHIDTLIKTAKSSKHPVHINVTAVAKSTTEVSYYVIVIS 1040

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            D+TEQK++   +   A  D LT +PNR      +   +  +    N    ++ ID+DK+K
Sbjct: 1041 DLTEQKRAENELRYLANYDALTKLPNRSLMYQEIEEAIKQA-ESSNTHCALLFIDLDKFK 1099

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             +ND  G AVGD +L ++T R+  +L     L R SG+ F +++ +  +   + +  + +
Sbjct: 1100 PVNDSFGHAVGDKLLCNITERVSNILNENAQLGRQSGDEFLVLIKNVESQDSLKETVMLI 1159

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
             K +A  + + +  I ++ASIG A +    IT+  +++NA++AM  AK  G N    F  
Sbjct: 1160 SKELANKVMIEDFAINISASIGVALYPFDAITTDILIRNADVAMMQAKQNGRNGFSFFSD 1219

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             ++     ++M++ DL  AV+    +  Y PI+ +    I G+E L++W + +   +S +
Sbjct: 1220 EMNEQIKQKLMLENDLKDAVKADLFFNHYQPIVDIEARTINGVELLMRWKNKE-QFVSPA 1278

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+ I+EE  +I+ +    L+R   ++    ++  +   +I +N++ K +L   + E +Q
Sbjct: 1279 VFIPISEETGLIERLTELALKRALIELAPLLNENPL--FYISLNLSPKHILKENITERLQ 1336

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +++     P +++L  +E++++ +  ++   L +L+  G  L LDDFGT  S L+YL  
Sbjct: 1337 CILADAGILPKQLRLEITETILLEDKLKAANQLQKLKAAGFKLLLDDFGTGYSSLTYLSQ 1396

Query: 876  IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             P + +K + S +    E     +I+++II +A+N+    IA+ +     ++ L   GC 
Sbjct: 1397 FPINVIKIDQSFVNSIGEDKGDESIIKTIISLAENLNLYCIAEGVENRDQMEFLVNAGCH 1456

Query: 934  YIQDSHVASPLGFNSI 949
             +Q  + A P+   ++
Sbjct: 1457 VLQGYYFAKPMSAEAL 1472



 Score = 91.9 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 10/183 (5%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVI--QHVLATGYFSQG---IFSDGERQSLAVL 412
           ++  +     +        +IV+L  F +   Q+        Q      +  ++  LA+ 
Sbjct: 752 LSMNVAYAPWKSPFAIFTYIIVMLSLFALFFWQYRNRQNVIQQAHTDTINSKKQTELALK 811

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            +   +WD+      V T   I   LG  +      I  +   IH +D+  F T    F+
Sbjct: 812 NNKSGIWDFRFKDGSVNTLRGIE--LGYENLEERVSIELFYSIIHPDDKRRFETKWQGFI 869

Query: 473 G--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGI 529
               +    Q  +R+R  + Q+ W     + + ++  G  L   GI  +ITEQ+ + E  
Sbjct: 870 SKKSKNKNWQLTYRLRHKNGQWLWYQDTGQIIFDTQTGKPLYVSGIYTNITEQRANEEQA 929

Query: 530 LCN 532
              
Sbjct: 930 KIL 932


>gi|13471907|ref|NP_103474.1| hypothetical protein mlr2027 [Mesorhizobium loti MAFF303099]
 gi|14022651|dbj|BAB49260.1| mlr2027 [Mesorhizobium loti MAFF303099]
          Length = 867

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/617 (21%), Positives = 260/617 (42%), Gaps = 42/617 (6%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLAVLGSGDIVWDW 421
             +      +  L   ++++   V   +      +   +     R  LA+  SG  VW+ 
Sbjct: 256 PKNEWALRSLMLLAGALVVLPIMVAGRLFGERQKNYAELRRLSGRLELALEASGIGVWEH 315

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+  + +     +  I G ++        +W   IH  D    R   D     ++G    
Sbjct: 316 DLTTNEMVWDDRVNEIYGKSADGKPRGYDDWAQAIHPEDLARARQDFD-LAAAKQGPYSS 374

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--------------------- 520
           ++R+   D     +  R     +  G   + IG   D+T                     
Sbjct: 375 QYRLLRPDGTVRHVRTRATYFQDIGGTP-KLIGAEWDVTSDVLLNENLIRERQLTESKNA 433

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +   I   A  D+LTG+PNR+   + L           + R  ++ +D+D++K+IN
Sbjct: 434 ELNLAKAHIEYAALHDSLTGLPNRRYLDELLAE-----NGKPDRRTALLHLDLDRFKQIN 488

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD +LV  ++ I   +   D +AR+ G+ F ++    ++   ++  A  + + 
Sbjct: 489 DTLGHAAGDAMLVHASKVIQANVGRDDFVARIGGDEFVVVSHGLDD-DGLSALAHRIIED 547

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P++          SIG A+  ++ +   ++L NA+LA+Y AK RG N  E F     
Sbjct: 548 MRQPVDYRGHPCRFGVSIGIAA--NNGVDVKQLLVNADLALYRAKSRGRNRYEFFNEELQ 605

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I +++   +E +E    Y P       EIVG+EAL +W HP+ G ++   ++
Sbjct: 606 SEIVRTKQIADEILGGLERNEFVAYYQPQFDASTLEIVGVEALSRWKHPRRGILAPDAYL 665

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEEL ++  I+  +L+    +   W       P  + +N++++ L D +L EG++ L 
Sbjct: 666 KVAEELNVVALIDRIVLKHALENFERWSRSHLNIP-RVSVNVSARRLEDRDLIEGLRKLA 724

Query: 819 SKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                    +     ES+ +  N +     +  ++++GI + +DDFGT  + +  L  + 
Sbjct: 725 ----IKAGTVSFELVESIFLDENDDLVTWNIDHIKELGIDIEIDDFGTGHASIVSLLKLR 780

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  L+T  T    +  ++ SII + K++   ++A+ +      + L  +GCD +
Sbjct: 781 PRRLKIDRQLITPITGSMAQRHLVASIIEIGKSLGIEVVAEGVETMEHARILKELGCDIL 840

Query: 936 QDSHVASPLGFNSILKL 952
           Q      P+   +    
Sbjct: 841 QGYLFGRPMEAKAFKAF 857


>gi|13506640|gb|AAK08640.1| ScrC [Vibrio parahaemolyticus]
          Length = 774

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 218/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K S + +   A  D LT +PNR    +RL   L  ++   + +  VM ID+D +K+
Sbjct: 333 IERRKASEKELAFQAKYDTLTELPNRSYGSERLALELIRASRTGS-KVLVMFIDLDHFKQ 391

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G  VGD++L    +R+  + +  D+LAR+ G+ F +++    ++      A ++ 
Sbjct: 392 INDSMGHFVGDEILKLSAQRLQNVARKTDLLARIGGDEFLLVIPDLPDNDTAKRVASSVL 451

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + + P      E  +T S+G + +      + ++L  A++AMY  K  G +    +  +
Sbjct: 452 SAFSEPFVWNNHEFFLTGSVGMSVFPDDGDNAEQLLACADMAMYRVKQDGRDAFCFYNHN 511

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     + ++  L  A+ N  L + Y PII L   +IVG EAL++W+  K+G ++  E
Sbjct: 512 MNQDLQRYLDLESRLRNAISNQLLEMYYQPIIELKSGKIVGAEALMRWNDEKFGFVNPEE 571

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQ 815
           F+ IAE+  +I  +  F +++       W+      P+F+ +N +S      + L   ++
Sbjct: 572 FISIAEKNGLIHQLGEFAIQQACYQASQWQSI---SPLFVSVNFSSVQFRYCDRLLAFIR 628

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++     +  +  +ES++  + +    +L  LR +G  LT+DDFGT  S LSYL  
Sbjct: 629 QSLEESGLPAEQFDVEVTESLLFNHDDELVDMLDNLRALGTKLTIDDFGTGYSALSYLQK 688

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S M      +    ++  II MAK +   I+A+ I  +  +  L  + C+
Sbjct: 689 FPFDRLKIDRSFMQNVFENDSDRELVNVIIAMAKALRLKIVAEGIEEQRHVDYLNELNCE 748

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  H + P+      +LL +
Sbjct: 749 FGQGFHYSRPVPAKEFEQLLNQ 770


>gi|239993275|ref|ZP_04713799.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii ATCC
           27126]
          Length = 991

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 144/613 (23%), Positives = 253/613 (41%), Gaps = 23/613 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            +   + +           A      LIV L    ++          Q         S A
Sbjct: 388 VLPAEITLYMPHAPLRSPLAYTIYAALIVSLFVAYLLSRQRQLFRL-QKAQQQVTLFSDA 446

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              + D V  +D  +  V   P    + G  +          L   +          L+ 
Sbjct: 447 FRQTRDWVLIFDKEKRLVAANPAFEHVFGFNNKEPLPKQLARLYLRYP--------TLNR 498

Query: 471 FVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            +  +          + E  +  AD + + ++I I  +S  +     Y+ + +DITEQK 
Sbjct: 499 HLSGKLPEMQGGDFWKDEAVIDGADGKRYDVLIDITAVSGESNTAEHYLIVISDITEQKN 558

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +L  A  D LTG+ NR   LDRL   + L+   ++ R  VM +D+D++K IND LG
Sbjct: 559 AERKLLKIATYDGLTGLVNRTLLLDRLEHAIGLARHHEH-RVAVMFVDLDRFKGINDSLG 617

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L  +  R+  L+     +ARL G+ F I++   N +  ++ F   + +S+  P
Sbjct: 618 HDYGDKLLRIVANRMRNLVAESGTVARLGGDEFVIVIEEVNANDDLSSFVAQIIESVETP 677

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702
           I+L E  + V+ SIG A +       +E++K A++AMY AK     G    +  ++    
Sbjct: 678 ISLAEEVLRVSCSIGVAFYPEDASEPAELIKQADVAMYTAKKDALSGFTYFTTDMNERAK 737

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ ++  +  A  +   +  Y PII       +G+E L++            +F+ + E
Sbjct: 738 TRLQLENKVKRAYSDDCFFNHYQPIIDARTNTTIGVELLLRGKLDNEPLFP-DQFIPVLE 796

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           EL  I  +    + R A D+ SW  Q      F+ IN+++          G+  L+ +  
Sbjct: 797 ELKYIIEVTRQAMRRAAEDLSSWYSQGFTG--FVSINLSALHFKTEFDLTGVLTLLDEFN 854

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                 +   +E V+M + + +   + R  K G  L LDDFGT  S LSYL   P   +K
Sbjct: 855 LPKEAFRFEITEGVLMDDSDNALRQINRFVKEGFVLALDDFGTGYSSLSYLKRYPLSVLK 914

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +          A++ + I +A N+  + +A+ +  +   +EL    C + Q    
Sbjct: 915 IDKSFVNEMAPGNANEALVTTTITLANNLNMSCVAEGVETKAQAEELIGKACYFHQGYFY 974

Query: 941 ASPLGFNSILKLL 953
           A P     ++ LL
Sbjct: 975 AKPCTAEEVVPLL 987


>gi|296156788|ref|ZP_06839626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295893387|gb|EFG73167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 667

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 132/542 (24%), Positives = 248/542 (45%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+   ++ G    W  ++   D       +  F   R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSTEDGAASSQNIAGFF-NRGVSYEV 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E RV+    +  ++       S S  +    I    DITE++ + E +   A  D+LTG+
Sbjct: 187 ERRVKTVHGERLFLFRNKFVHSGSGVEEQFLICSGTDITEERLAQERLTELANTDSLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  DR+   ++ +A        V+ +D+D +KK+ND  G   GD ++  ++  I  
Sbjct: 247 ANRNAIQDRIRAAIEDAA--PGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAISL 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++  + ++   A  + + +  P +L   E+    SIG A
Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAHELEVTAQRILERMRTPFSLGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +     +   ++++A+ AMY AK  G      F     R   + + +  +L   ++  +
Sbjct: 364 LYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGIDEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G EAL++W+ P+ G I  +EF+  AEE  +I  +  +++E   
Sbjct: 424 LTLHYQPKLSLATGAVQGAEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMET-- 481

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               + + +A+   + I IN++++ L+D  +       +      P  I L  +ES ++ 
Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQHANLDPCLIDLELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897
           +   +  L+ + R++G  + LDDFGT  S LS LG IP D +K + S +    +  K  A
Sbjct: 542 DETAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADPKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ +   ++A+ I  E +   +  +G DY+Q       +      + L++R 
Sbjct: 602 LVRSMVVVAQELNFKVVAEGIETESEELFMKGLGVDYVQGFLYGQAMPAAEFERWLQDRQ 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|241662019|ref|YP_002980379.1| MHYT sensor-containing diguanylate cyclase/phosphodiesterase
           [Ralstonia pickettii 12D]
 gi|240864046|gb|ACS61707.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Ralstonia
           pickettii 12D]
          Length = 687

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 118/432 (27%), Positives = 214/432 (49%), Gaps = 7/432 (1%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  DNLT + NR    DRLT  +  +   +  R  VM +D+D +K +NDV G  
Sbjct: 259 KELAYLALHDNLTKLSNRVLLEDRLTQAIRTADR-EKRRFAVMFMDLDGFKAVNDVYGHH 317

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ + +RIG  ++  D +AR+ G+ F  +L   ++       A A+ + +  P  
Sbjct: 318 VGDLLLIDVAQRIGARVRQQDTVARVGGDEFV-VLAYVDDPEDAGTLADALLEVVREPFM 376

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDR 704
               E+ V+ SIG A +        ++L NA+ AMYHAK  G N    F  S       +
Sbjct: 377 AGGHELRVSTSIGIAVYPGDGGNQHDLLTNADAAMYHAKGLGRNAYSFFEPSMNADVHQQ 436

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + + +DL  AVE  EL L Y P     +  I+G+EAL++W HP+ G + + EF+ +AE+ 
Sbjct: 437 LQLVQDLRRAVERHELVLHYQPKFNAPNGPIMGVEALVRWQHPQRGLVPADEFIPLAEKT 496

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L+   R +  W+ +       + +N+++       L + ++  +++    
Sbjct: 497 GLIVPLGAWVLDEACRQMAQWQRE-GHSGWSVAVNLSALQFGHAALIDTVRETLARHALD 555

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P   +K +
Sbjct: 556 PRSLMLEITESTAMRDVDASLQILQQLDAMGVRISIDDFGTGYSSLLYLKRLPASELKID 615

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +       +  AI+ +I+ + + +   I+A+ +        LTR+GC  +Q   +  
Sbjct: 616 RGFVRDLAHDTEDAAIVSAIVALGQTLNLRIVAEGVETAEQQAFLTRLGCHSLQGYLLGR 675

Query: 943 PLGFNSILKLLK 954
           P+   S+   + 
Sbjct: 676 PMTAESLSAAMA 687


>gi|327483453|gb|AEA77860.1| C-di-GMP phosphodiesterase A-like protein [Vibrio cholerae
           LMA3894-4]
          Length = 684

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 254/572 (44%), Gaps = 32/572 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + +L      D +    +  D  ++  P  A +LG               
Sbjct: 125 LVRSLEESESKYALLTTLLPDGLMM--VENDCIISANPSAARLLGFDDAQKLLGENLSRL 182

Query: 455 YIHINDRDNFRTILDSFVGYR------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +I    +  F + L S +  +        R  +E +++               +  +   
Sbjct: 183 FIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAG--------CTSLLGNQSQ 234

Query: 509 ILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++    +  D  E  K+       +A  D+LTG+ NR  F  RL   +      +     
Sbjct: 235 LI----LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI-----QNETPLV 285

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    +L  L G+ FG+IL    ++
Sbjct: 286 MLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHN 345

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK R
Sbjct: 346 RSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKER 405

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 406 GRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWK 465

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS   F+  +E+  +I+ +   ++  +   +  W     + P  + INI+ +  
Sbjct: 466 HPVEGYISPGAFIPGSEKAGLIEHLGRVVMREVFATVKRW-KLQGILPGRVAINISPEQF 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   P+ I    +ES VM + E ++ +L  ++K+G +L++DDFGT
Sbjct: 525 GNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + ++      K++ ++ +II + +++  T++A+ +  +  
Sbjct: 585 GYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQ 644

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P   + + +L  +
Sbjct: 645 ATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676


>gi|115526721|ref|YP_783632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodopseudomonas palustris BisA53]
 gi|115520668|gb|ABJ08652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodopseudomonas palustris BisA53]
          Length = 1223

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/564 (24%), Positives = 248/564 (43%), Gaps = 33/564 (5%)

Query: 399  GIFSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-HGPIR 450
             +    ER +        A+      +   D     V T      + GL    +  G   
Sbjct: 663  ELAQQAERLARTNMQFDAALTNMSQGLAMLDSQGRLVLTNKRFQEMYGLDEEQLKPGTPA 722

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDI 509
              L        + +  +  +     +G L    R+ +  D+    +  RI  +  +    
Sbjct: 723  EDL-------VERYVPLFAASKSMVKGYLA---RLSKDVDSVIPLLDGRIIRIRRAQTSD 772

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              ++    DIT Q++S   I   AF D LT + NR     +    L+ S        +V+
Sbjct: 773  GGWVATHEDITAQERSARQISYLAFHDGLTELANRAELNKQGHLALESSDR----PISVL 828

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SL 628
            +ID+D++K +ND  G A GD +L  +  R+  L    D++AR+ G+ F I+     +   
Sbjct: 829  LIDLDRFKAVNDTFGHAAGDRLLQLVAIRMRALAGPKDLVARVGGDEFAILQAPCPDQRE 888

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                 A    + +  P +L  ++ ++ ASIG A  +   +   +++  A+LA+Y  K  G
Sbjct: 889  AAIALASRTIEVLRQPFDLGGKQASIGASIGIAVRSPQTVRFDDLIHQADLALYEIKSGG 948

Query: 689  GNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             N    +  S  +   +R+ ++ DL  A+   ++ L Y PI+RL D  + G+EAL++W H
Sbjct: 949  RNDCLLYEDSLGARAHERLELENDLREAIAGGQMELHYQPIVRLTDLRVCGMEALVRWRH 1008

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            P  G +S   F+ +AEE  +I  +  F++ +   D  SW D      + + +NI+   + 
Sbjct: 1009 PVRGLLSPDLFIPLAEETGLIVQLGEFVVNQACHDAASWPDH-----VKVAVNISPTHIK 1063

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
               L   +   +  +  +  R++L  +E+V+M   E     L +LR +GIS+ LDDFGT 
Sbjct: 1064 GRGLLGTVTLALLNSQLATERLELEVTETVLMERDEDMLAELHQLRALGISVALDDFGTG 1123

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S LS+L    FD +K + S +   TE     AI+ ++  +A+ ++    A+ +  E  +
Sbjct: 1124 FSSLSHLRMFSFDKIKIDRSFVAEITERSDSAAIVCAVTGLARTLDIVTTAEGVETEQQM 1183

Query: 925  KELTRMGCDYIQDSHVASPLGFNS 948
            + L   GC  +Q      P   + 
Sbjct: 1184 QILRAAGCTQLQGYLFGRPKPADQ 1207



 Score = 80.0 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456
           Q    +      A+  +  IV   D+    +        I G +   + G     L   +
Sbjct: 30  QLAADELGHLVAALDQTA-IVAITDVKGRILHANDKFCEISGYSRDELLGQDHRLLKSGV 88

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +  + FR +         G    EF  RA   + +W+   I P  +  G ++ Y  I 
Sbjct: 89  HPD--ELFRDMYRVIA--GGGVWHGEFCNRAKSGRLYWVDTTIVPRLDGRGKVVGYTSIR 144

Query: 517 NDITEQKKSLE 527
            DIT++K   E
Sbjct: 145 VDITQRKTMEE 155



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 8/142 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG------SM 445
                 + +    +     +   GD +   D     V + P  A ILGL +         
Sbjct: 149 QRKTMEEALRRSEQLLRSTMTALGDGLVIQDRDGRIVASNPAAARILGLGADPCGSTALF 208

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                      H  D           +     +      +R  D    W+ I    +   
Sbjct: 209 DPCWVAIKEDGH--DFPAVEHPAQVTLATGEPQRDVVMGLRKPDGAVSWVSINSVAILGH 266

Query: 506 NGDILRYIGIANDITEQKKSLE 527
           +      +    DIT ++++ E
Sbjct: 267 DDCPDSVVTSCADITAKRQAEE 288


>gi|331012469|gb|EGH92525.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 951

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + ++  A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 503 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 561

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  + +
Sbjct: 562 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKTLANHVVE 621

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 622 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 681

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G +S +EF
Sbjct: 682 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 741

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  +++  +   I SW ++ N+  + I IN++ + L    L E ++ +
Sbjct: 742 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 800

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 801 VKGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 860

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     +  L   GCD +
Sbjct: 861 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 920

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    + P+       ++K    L 
Sbjct: 921 QGYLFSKPVIIEECASMIKSSRSLS 945



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 139 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 197

Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    ++   S      L              A+     IV +              
Sbjct: 198 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 256

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492
                 +   +          + I++     +                 E R+     + 
Sbjct: 257 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 308

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    I P+ +  G + +YI I  DIT +K+    IL N+ + NL  +  +Q+  +   
Sbjct: 309 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 368

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +      +  ++V+D
Sbjct: 369 STLGELAALTAAQGLTLSKAALLVVD 394


>gi|311108782|ref|YP_003981635.1| signaling protein [Achromobacter xylosoxidans A8]
 gi|310763471|gb|ADP18920.1| signaling protein [Achromobacter xylosoxidans A8]
          Length = 687

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 214/432 (49%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E ++  A  D LT +PNR    DRL   ++ +         V+  D+D +K +ND  
Sbjct: 255 EANEELVQLALHDTLTKLPNRILLEDRLEQAIESATRRKGY-FAVLFFDLDGFKAVNDAY 313

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ L +RI   L+  D +ARL G+ F I+L         A+ A  +  +IA 
Sbjct: 314 GHHTGDALLIDLAQRIRLTLRTQDTVARLGGDEF-IVLSEVVEPTDAANVADRLIDAIAR 372

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ +   E+ VT+S+G A + ++   +  +L NA+ AMYHAK  GG     F  S     
Sbjct: 373 PVTVYGHEVMVTSSVGIAIYPNNGQDTHALLTNADAAMYHAKRLGGTGYSFFEPSMNADA 432

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I+   DL LA E ++L L Y P        I+G EAL++W+HP  G +   +F+  A
Sbjct: 433 HEQIELLHDLRLAQERNQLVLHYQPKYEAPAGPIIGAEALLRWNHPTRGLVGPDQFIPTA 492

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I +I  +++    R +  W +        + +NI++       L E +++ + + 
Sbjct: 493 EKTGLILSIGEWVINEACRQMREWINA-GQGHWTVAVNISALQFAHASLVETVRSALERH 551

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + L  +ES  M + E S  +L RL  +G+++++DDFGT  S L YL  +P   +
Sbjct: 552 GVPPACLTLEVTESTAMRDAEASLAVLKRLSNLGVTISIDDFGTGYSSLLYLKRLPATEL 611

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +       +  AI+ +I+ +A+ +   I+A+ +      K LT +GCD +Q   
Sbjct: 612 KIDRGFVNQLENDNEDAAIVSAIVALAQQLNLRIVAEGVETPAQQKFLTGLGCDSLQGFL 671

Query: 940 VASPLGFNSILK 951
           +  P+     L+
Sbjct: 672 LGKPMPATEFLE 683


>gi|183221125|ref|YP_001839121.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911216|ref|YP_001962771.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775892|gb|ABZ94193.1| Signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779547|gb|ABZ97845.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 702

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 148/561 (26%), Positives = 264/561 (47%), Gaps = 13/561 (2%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             + + Q  A+  +  IV   D            A   G     + G     L       
Sbjct: 142 LKEIQLQKFALDQAN-IVSITDANGIITYVNEAFANATGFPVTELLGQNHRILKC----- 195

Query: 461 RDNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           ++  +   +      ++    + E      D    W+   I P   ++G + +YI I +D
Sbjct: 196 QNKTKEEWEKIWESIHKGKVWRGEILNTKKDGSSFWVDTTIVPFIGTDGSVFQYIAIHHD 255

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++K + E +  +AF DNLTG+PNR  +L R+   +      ++  P +  I+ID +K+
Sbjct: 256 ITDRKLAEEQLTHDAFYDNLTGLPNRALYLARIEQKIFSYNIKNDGYPILFCINIDNFKR 315

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN  LG   GD +L+  ++R+ +      ++ RL  + F I+L    +  +  D+A  + 
Sbjct: 316 INHSLGNEAGDKILIIFSQRLKQFSDKEAVITRLGADNFSILLNHLLSIEEAVDYAYRLL 375

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I  PI +   EI +TAS G + +      +  +L+NAE+AM+HAK +    V  F  +
Sbjct: 376 EYIGDPIPIGGYEIYLTASCGISGFGLGGKEADVLLRNAEIAMFHAKSQKVGLVSVFNQA 435

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   ++   DL  A+  +E+ + Y PI+ L   +I   EAL++W HP+ G +S +E
Sbjct: 436 MQERIHFQLEIQNDLKKALNQNEISVFYQPILDLKTNKIGHWEALVRWRHPQRGMVSPAE 495

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  I  F+LE+ A  I   + +    PI I +N++ +   D  +   +  
Sbjct: 496 FIPLAEDSGLIVPITRFVLEQSANVIEEVQIKNGK-PISIAVNLSPQVFFDQNIFHWIVD 554

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L  +     + +++  +ES+ M N   +  +L  L  IG+ + LDDFGT  S LSYL  +
Sbjct: 555 LHKQRNIPYTSLQVEITESLAMKNLSETVPILSNLIDIGVKVALDDFGTGFSSLSYLEKL 614

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +       K   +L SII MA ++  +++A+ +     ++ L    CD 
Sbjct: 615 PLSILKIDKSFLNNVHVGSKESFLLISIINMAHDLGYSVVAEGVEELEQLELLKSYQCDE 674

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ   ++ P+ F  I+  L +
Sbjct: 675 IQGYWLSKPIPFPEIIPFLDQ 695


>gi|153011143|ref|YP_001372357.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563031|gb|ABS16528.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 786

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 141/790 (17%), Positives = 293/790 (37%), Gaps = 57/790 (7%)

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSM------LIPTFAMAWVVLGYISIDFG 237
           TV     +  +   ++        +  +  R          +   A+A  +  + +    
Sbjct: 9   TVQHDQPFVVLAASISFASMFAFFLLLVRARECTESRRDNWLAISALAGGLGVWATHFVA 68

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
            L+    +              A++         +L+   +   +     + ++  A+ F
Sbjct: 69  MLAYRGTVAIEFD-FTITVLSAAIAVLGFWLSVRFLNGKAFKYVLIAAISATLSIAAMHF 127

Query: 298 CMSFYY----------PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
                           P +        L  +  ++        M+     V  I A   +
Sbjct: 128 TGMSAIRAAADVHYDLPPILIGSIISILLLLAAFWFVMNTAGWMRVLLPTVGGILAVCTL 187

Query: 348 FIWFIGLWMAITKRL-----DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
               +     +            I +  L+G +  +V ++  T I  V    Y +     
Sbjct: 188 HFTAVASTELVPNPTLPAADPLGIGRLWLIGAIAAVVSIVALTTIIAVFVDRYMTD---- 243

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                      + D +         V      + ++  +  ++ G   +    +   D  
Sbjct: 244 ----LKGFANATLDGLAVVR-DGGIVEMNARFSDLMRRSEKALVGVAPD--TLLLAADGL 296

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                    +     R   + R+                     G     + +  D+TE+
Sbjct: 297 PVCASRPEAIEA-APRFPNDERI----------FELAVHTIEYQGRPCEVLAV-RDLTEK 344

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +   I   A  D LT +PNR  F +RL   +   + +      V+ +D+D++K +ND+
Sbjct: 345 RTAQRQIEHMARHDTLTDLPNRMFFEERLANAVARRSREP---FAVLALDLDRFKAVNDI 401

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL +++  +   +   D  AR+ G+ F I+ +           +  +  +  
Sbjct: 402 FGHAEGDRVLKTVSSILKRSINGIDTAARIGGDEFIILQVGVPQPKGARKLSEKILDTFR 461

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
             +N +     V  SIG A + +    +  +   A++A+Y AK  G   V  +     R 
Sbjct: 462 SELNTVLDPTAVGVSIGVAVYPNDGKDAEAIRHAADIALYRAKTEGRGMVAFYSPEMDRE 521

Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R  ++ DL  A+   ++ + Y P+    D    G EAL++W+HP+ G I    F+ I
Sbjct: 522 IRERRQMEADLRHAMVRGQISIAYQPLFATADGSCTGYEALVRWNHPERGQIPPEVFVPI 581

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L    R    W        + I +N++        L + + +++++
Sbjct: 582 AEETGVIVPLGEWVLREACRTAAGWEKH-----LTIAVNLSPVQFRLINLPDTVSSVLAQ 636

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P+R++L  +E+ +M +   +  LL R++K+G+ + +DDFGT  S LS L   PFD 
Sbjct: 637 TGLDPTRLELEVTEAALMKDRLTTLELLRRMKKLGVRIVMDDFGTGYSSLSNLQSFPFDK 696

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +T         AI+R+I+ + ++++  ++A+ I      + +   GC+ +Q  
Sbjct: 697 IKIDRSFITSMETDVSARAIVRAIVGLGRSLDLPVVAEGIETFDQHRMVIEEGCEQVQGF 756

Query: 939 HVASPLGFNS 948
               P    +
Sbjct: 757 LFGRPANAPA 766


>gi|83644378|ref|YP_432813.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632421|gb|ABC28388.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 928

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 142/598 (23%), Positives = 269/598 (44%), Gaps = 17/598 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              I   +   + L  +++ F  +            + S   R          +    D 
Sbjct: 333 RSAIIEQMTPEMALAGLIVLFAALIQRYFLTAGQ--LESSQRRYRQMFEHCDAVQIILDP 390

Query: 424 VRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
             ++V    P      G +S  M     +        + +         +   +  +   
Sbjct: 391 TNNKVIDANPAACDFFGFSSEMMGNISAS--RLFLSENNEMLGENWLPSLQSGKTVIAA- 447

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              R  DN+   + + +  + +     L  I   +DIT++K+S E I   A+ D LT +P
Sbjct: 448 ---RRGDNRSSLVEMYVSDIKDKASSYLYLI--VHDITDRKRSEEQIRLQAYYDPLTRLP 502

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    + L +++      +  R  V+ ID+D++K++ND LG  VGD +L  ++ R+   
Sbjct: 503 NRSYLFEHLNSLIASHKR-EQARLAVLFIDLDRFKQVNDNLGHGVGDKLLQQVSTRLKSR 561

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D+LARL G+ F ++L            A  + + +A   ++ + E+ + ASIG   
Sbjct: 562 LRESDMLARLGGDEFTVVLPHLREETDAIHVAKMLLQQLADSFSVGDYELHIGASIGVTL 621

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSEL 720
           +      +S ++KNA++AMY AK  G N    F      +   R+M++ D+  A +N + 
Sbjct: 622 FPKDGEDASTLIKNADIAMYKAKDNGRNQYRFFEERMNEAVASRLMLEGDIREATQNEQF 681

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +L + PII L +  + G EAL++W HP++G +   EFM IAEE   I  I+ ++L+    
Sbjct: 682 HLEFQPIIDLKNMRLAGAEALLRWLHPRFGELHPREFMSIAEETGNIVQISEWLLQNALN 741

Query: 781 DIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               W+         FI +N++ + L+ ++  +  + +I ++   PS + L  +E  ++ 
Sbjct: 742 LAAEWQYSRPAGQQPFIAVNMSRRQLISSQHIKRWRDIIRQSEVPPSSLVLELTEHNLLN 801

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897
             E SR  L  L ++G+ L+LDD+G   S L+ L  +P   +K +G L+       K   
Sbjct: 802 EFEESRRCLIELHQMGVRLSLDDYGHGASSLTLLKDLPISMLKLDGLLIRNLGRQTKEEV 861

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++ +++ M + ++  I+A+ +     +  L   GCDY Q    + P     +  +L++
Sbjct: 862 LMDALVKMGRAMDMKIVAEGVETPQQLAVLRESGCDYGQGYLFSPPTQPRELSMMLEK 919


>gi|229918006|ref|YP_002886652.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
 gi|229469435|gb|ACQ71207.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
          Length = 868

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 164/812 (20%), Positives = 327/812 (40%), Gaps = 35/812 (4%)

Query: 165 ISTPNLPQIYLWEPNFYK---DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
           + +       L+    Y    D   S    +     + +L+ I  +I +   +       
Sbjct: 69  LISAGNVCFTLYLLMHYHSTNDNTQSLLFLQNFFYLIMALIVITQSIEFRTLKLRTFDLF 128

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
              +++++G + I F     +  +        +            ++L   +   +    
Sbjct: 129 ALFSFLLIGGLHIWFFSTQDVSLVSQLSGFEEQMLLISLYMMLAFLYLNRVVSAGQQFRI 188

Query: 282 VGYITFSGIACIAI---LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
           +  I   G    +I   LF  S     V   +   ++ +I + Y    +   +  Y+  V
Sbjct: 189 LLLIGILGFTIASIANTLFVFSGITHEVIHLLQISSILTISISYWVDDVSEDVLAYDSIV 248

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV----------LIVILIGFTVIQ 388
             +   +++ ++ +     +   + + +I  A++  L+          LI   +      
Sbjct: 249 DYVLYSVVVMMFLLASDRLLGTSVMDSMIANAVLLLLIRQFVVSKQNALISHRLHTVNTD 308

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +A    +  +    ++         + ++ +D+  + ++     ++ILGL + ++ G 
Sbjct: 309 LEVAVSTKAHELEIREQQYRSLFAYHSEPIFLFDLHGEVLSVNEAGSSILGLTTETLLGS 368

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             N L  I   DR  +  IL      R   +  + RV   + +     +   PM   +G+
Sbjct: 369 --NILDIIESKDRAPYTIILQELTNGRPRTI--DVRVMTDEGETRVWQLVNVPMI-IDGE 423

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +     IA DIT+  +  E IL  A  D+LTG+ NR +  +++  +++     +    T+
Sbjct: 424 VEGIYAIAKDITQMIEQQEQILYQAKFDSLTGLHNRYALQEQIERLIE-----EGRTFTL 478

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M  D+D +K+IND  G  +GD +L  + +R+   L   +   RL G+ F ++    ++ +
Sbjct: 479 MFSDLDGFKEINDQFGHHMGDQLLQHIGKRLRTALLPNEYAGRLGGDEFIVVAEHGDDEM 538

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                    R     P  +    + V ASIG   +         +L NA+LAMY AK +G
Sbjct: 539 LTERL---RRLVYRPPYYMAGTLVEVHASIGIVRFPEHGKKLKHLLSNADLAMYRAKDKG 595

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +    F             + E L  A+E  E+ L   P +    + I+G EAL++W H
Sbjct: 596 RDETVMFEPELREDKEERKVLMEGLETALEKGEISLFLQPQVDASTKAIIGAEALMRWQH 655

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I  S+F+ IAEE   I+ +  +M+    + I  +       P  + +N++ + L 
Sbjct: 656 -NGAFIPPSQFIPIAEETGHIQDLGRWMIHETFQLIHVFEQGDIHLP-KLSVNLSVRQLF 713

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L + ++ L  +    PSR+    +E+V   + +R    +  L+ +GI L++DDFGT 
Sbjct: 714 DEHLIDYLKTLFERFPIEPSRLNFELTETVAAHHSDRVLNRILELKALGIKLSIDDFGTG 773

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P D +K          E R    +  +I+ MA+ +   ++A+ +  E   
Sbjct: 774 YSSLAYLVRYPIDELKIPREFTMQLEENREYQMVTTTIVAMARQLGMALVAEGVETEYQE 833

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L ++GCD +Q    A P+  +  +    + 
Sbjct: 834 TFLRKIGCDSMQGYRYAKPMPLDEFVIYYMKH 865


>gi|284043232|ref|YP_003393572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283947453|gb|ADB50197.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 769

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 125/553 (22%), Positives = 237/553 (42%), Gaps = 16/553 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             LA  G+   +   D+    +     +  I G     +     + L   H +  D    
Sbjct: 208 FRLAFEGAPIGIALADLDGRFLRVNDALCEITGYTEAELLAANVDLLG--HSDAADAEAE 265

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D  +       + E R+  A  +  W+ + +  + +S+G     I    DI+++K+  
Sbjct: 266 HVDRLMRGEIRSYRLERRIVHATGRSVWVSLSVSLVRDSSGVPRYCIKQLEDISDRKRFE 325

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A  D LTG+ NR++F   L                V+VID+D +K IND LG A
Sbjct: 326 GQLAYLADHDALTGLYNRRAFQRELEQRTSEDGRGG----AVVVIDLDHFKDINDTLGHA 381

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+V+V + R + + L+  D+L RL G+ F  +L   +     A  A  +R      + 
Sbjct: 382 AGDEVIVRVARLLAKRLRKTDVLGRLGGDEFATLLSGVSREEAEAVIAELLRVVREQSVV 441

Query: 647 L-LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHV----ESFRVSSF 700
           +     I +TAS G A +      +  E+L +A++AMY AK  G +      E+ +  + 
Sbjct: 442 VEGGHPIGLTASAGIALFEGDTPLSGEELLVSADIAMYDAKEAGRDRHAISVETEQRQAQ 501

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+   + +  A+E+    L   P++ L        E L++        I  + F+ I
Sbjct: 502 MTERMAWSQRMRDALEHDGFVLFQQPVVDLRTGLPKCHELLLRMRGDDGELIPPAAFLPI 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I+ ++  R    I +        P+ + +N++   + D  L E ++  ++ 
Sbjct: 562 AERSGLIAEIDRWVTRRAIATIAAQEAAGR--PLRLAVNLSGASVSDPGLLEIIEGDLAA 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  +    +E+  + N +R+R     L ++G  L LDDFG       YL  +PFD 
Sbjct: 620 MAPPPGSLVFEVTETAAIVNLDRARAFAATLAELGCELALDDFGAGFGSFYYLKRLPFDY 679

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +     + +   ++R+I+ +A+ +    +A+ +  E  ++ L  +  D  Q  
Sbjct: 680 LKIDGDFIRQLTSSHEDQLVVRAIVEIARGLGKRTVAEFVGDEATLELLRELRVDDGQGF 739

Query: 939 HVASPLGFNSILK 951
           H+  P     ++ 
Sbjct: 740 HLGRPAPLEDLIA 752



 Score = 91.6 bits (226), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 64/192 (33%), Gaps = 3/192 (1%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
              G  R   L+   +   +  +     +      +         +++++       ++ 
Sbjct: 3   SQNGPTRVSALVREAVPFAVGAVLAIALVPLSSLREASATWQRVLVLVVLGTAIGCAVRW 62

Query: 390 VLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           ++A     Q  +    E+   A   +   +  + +             ++G   G + G 
Sbjct: 63  LVAHLRAGQDALQHAQEQFRTAFEDAPIGIALFTVDGRFTEVNRAFCEMVGAERGQIVG- 121

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             + L ++   DR +      + V   R     E R+R AD +  W  +R   + +  G+
Sbjct: 122 -ISVLDHVAPADRPDSLAAFRALVAGERTTFHAEQRLRRADGREVWCALRASLVRDGAGE 180

Query: 509 ILRYIGIANDIT 520
            L +I    D++
Sbjct: 181 PLHFIVQIEDVS 192


>gi|148549159|ref|YP_001269261.1| PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida F1]
 gi|148513217|gb|ABQ80077.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 818

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/625 (20%), Positives = 253/625 (40%), Gaps = 25/625 (4%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                   +++  L+  L+  + LI        + +     F+  +  + ER  + +   
Sbjct: 195 ALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTILD 469
           GD V   D+        P    +    SG   G   + L      +   + R     +L 
Sbjct: 255 GDAVITTDVEGSIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEHAEEDGRSLVEQVLS 314

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +       +   R+   D     + +   P+ N +G +   + + +D+T++++ +  +
Sbjct: 315 GSLKGGSEHARLIQRL---DGSTVSINLVGSPIVN-DGQVSGIVLVLHDMTQERQYIANL 370

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR+ F  RL   L+  A     R ++M +D+D++K +ND  G A GD
Sbjct: 371 SWQATHDALTGLANRREFEYRLEQALNDLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 429

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
           ++L  +   +   L+  D LARL G+ FG++L +     +       +R+ +        
Sbjct: 430 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCP-PDQAERIGEQLRQMVQSLHFVWK 488

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704
            R    T SIG      +  T    L+ A++A Y AK +G N V+ +         R   
Sbjct: 489 GRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 548

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +   + L +A+E +   L    I  L   E    +E L++        I  S F+  AE 
Sbjct: 549 MAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAER 608

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822
             ++ A++ +++  +   I    ++    P+    IN++   + D++  E +Q L  +  
Sbjct: 609 YGLMTALDRWVVRNVFMVIRQCLEEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 668

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I    +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K
Sbjct: 669 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 728

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +          A++  I  +   +    IA+ +   +  + L  +G DY Q   +
Sbjct: 729 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 788

Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963
             P     +S+ +      PL++  
Sbjct: 789 ERPQVFTCDSLQRQRIAARPLLQRA 813


>gi|316931601|ref|YP_004106583.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315599315|gb|ADU41850.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 840

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/556 (24%), Positives = 257/556 (46%), Gaps = 14/556 (2%)

Query: 398 QGIFSDGERQSLAVLGSG----DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
           +   +  ++++ A+  +        W   +   R   +P++  +LGL   +         
Sbjct: 268 EAARTLLDQRTGALEEAHRLGKIGTWYHRLDTGRTVWSPELYQLLGLEPDAFEPTYDGTK 327

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            Y   +D +    I    +   +     + RV   D     + I  +  + SNG I   I
Sbjct: 328 AYFLDDDAERLLKIQKRVLRSSKTE-ATDIRVLHTDGAPRDLAIICKAET-SNGKITGLI 385

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G A D+TE+K +   +   A+ D LTG+ NR  F  +L   L      ++ +  +++ID+
Sbjct: 386 GTAQDVTERKDAERRLEQLAYTDPLTGLANRALFKRQLVD-LFEKPISESEQNALLLIDL 444

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIAD 632
           D++K++ND LG + GD +L+ +   + + L     +AR+ G+ F ++  S   ++     
Sbjct: 445 DRFKEVNDSLGHSTGDALLIHVAGVLRQELDPQAFIARIGGDEFAVLTNSPTTSAEATTA 504

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +++P+ L E E  + A+IG A       T+ +  +NA+LA+Y AK  G    
Sbjct: 505 LADRLIAKLSIPVELAEGEACIGATIGIAILPEHGATAEKASRNADLALYMAKEAGRGRA 564

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F      +    +     L  AV++  L   Y P I L    ++G EAL++W HP+ G
Sbjct: 565 LLFEPIYAEAVDQRLDLGRRLRHAVDSGGLETHYQPQIDLKTGRVIGFEALLRWSHPERG 624

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS +EF+ IAE   +I  +  ++L    + +  W D    P   I +N++   + + + 
Sbjct: 625 PISPAEFIPIAETTGLIVDLGHWVLRDACKQMRGWLDAGL-PARTISVNVSPAQIWNGDF 683

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSL 869
            + +  ++  T   P  + L  +E++ + + ++     L  L K+GI L LDDFG+  S 
Sbjct: 684 EKVVATVLGDTGLPPELLCLELTENLFVDHTKQKVSTTLAALSKLGIGLALDDFGSGYSS 743

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +PF+ +K + + + G     ++  +L  II ++  +  +++A+      ++  L
Sbjct: 744 LGYLTRLPFNRLKIDRTFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAELAAEVDLL 803

Query: 928 TRMGCDYIQDSHVASP 943
           T   CD++Q    + P
Sbjct: 804 TAFDCDFVQGYVFSRP 819



 Score = 55.3 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 407 QSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
              A+  +    W+           +P+ A++    +     PI           RD  +
Sbjct: 25  LRRAMRMARVAYWESHSAAETDFWMSPEFASLYDFQTPDGSVPIAAMRERDLTESRDVLQ 84

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT----E 521
               +     R     E ++   D      ++   P  +SNG + R  G+  D+T     
Sbjct: 85  AHYAACWAEGR-PFAVETKLPKPDGSPLDCVVHGEPEFDSNGQVQRVFGVVRDVTPETSA 143

Query: 522 QKKSLEGILCNA 533
            ++  E     A
Sbjct: 144 LRQLAESEQRLA 155



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 20/152 (13%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-- 441
           F V++ V       + +    +R +  V  + D  W+                +L     
Sbjct: 131 FGVVRDVTPETSALRQLAESEQRLADFVSTASDWCWESGPD----------HRLLPYPKS 180

Query: 442 -------SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
                       G    W       + D+  +       +R  R  + +     D     
Sbjct: 181 VDGNAALQSVASGGRARWELSYAPEEEDSMASHRADMEAHRPFR-DFVYTSIGNDGSRVS 239

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +    +P+   +G  L Y G A+DIT+ + + 
Sbjct: 240 ICTSGKPIFADDGRFLGYRGTASDITQLEAAR 271


>gi|298487212|ref|ZP_07005261.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158236|gb|EFH99307.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 653

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 204 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 262

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 263 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 321

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 322 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 381

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 382 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 441

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 442 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 500

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 501 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 560

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 561 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 620

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 621 LGYPLPAEQFLDEIRA 636


>gi|239993891|ref|ZP_04714415.1| GGDEF domain-containing PAS signal transduction protein
           [Alteromonas macleodii ATCC 27126]
          Length = 777

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 220/469 (46%), Gaps = 7/469 (1%)

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            +   R  P ++    I ++  IA+   E++ + + I   A  D+LTG+PNR   LD L 
Sbjct: 311 IYHRERAVPTADEMRLIEQFAHIASIAIERELANQLIWKQANFDSLTGLPNRNLMLDHLQ 370

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +  +  + + +  V+ +D+D +K IND LG  +GD +L+   RRI + L+  D ++RL
Sbjct: 371 LAIKAADRESD-KVAVIFLDLDNFKDINDTLGHDIGDKLLIECARRIKQCLRSDDTVSRL 429

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F IIL        I      +   I  P +L    +  +AS+G   +         
Sbjct: 430 GGDEFVIILNGIKGLSSIELVVQKLLGEIVKPYSLELERVHTSASLGVTLYPDDAKDVKG 489

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +LKNA+ AMY AK  G N+ + +          R+ +  DL  AV+N EL++ Y PI   
Sbjct: 490 LLKNADQAMYGAKDLGKNNYQYYTHDMQTAAIKRMTLLNDLRYAVKNKELFIEYQPIACF 549

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             ++++  EAL++W HP  G I+  EF+ +AEE  +I  I+ ++   +  +I  W+ Q  
Sbjct: 550 SSQKVMKAEALLRWQHPTKGRITPDEFIPLAEESGLIIDISNWVFNEVCANIKQWKAQNR 609

Query: 791 MPPIFILINIASKD-LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              + + IN +                L+     S   I L  +E+++M   E     L 
Sbjct: 610 QE-LQVSINTSPSHYFNLESNITQWLNLLLDQKISARSILLEVTENLLMEANEMVSKKLF 668

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAK 907
           + R+ G+ + LDDFGT  S +SYL   P D +K + S +   T+      +  +II MA 
Sbjct: 669 QFRQAGVDIALDDFGTGYSSISYLKRFPTDFIKIDRSFVKSMTDVSNDKVLCEAIIVMAN 728

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +   ++A+ +  +     L  MGCDY Q   +A PL  +      +  
Sbjct: 729 KLGIKVVAEGVETQEQYDILKSMGCDYAQGYFIAKPLSKSDFESFWERH 777


>gi|257483244|ref|ZP_05637285.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 969

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + ++  A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  + +
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKTLANHVVE 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G +S +EF
Sbjct: 700 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  +++  +   I SW ++ N+  + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VKGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     +  L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    + P+       ++K    L 
Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    ++   S      L              A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492
                 +   +          + I++     +                 E R+     + 
Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    I P+ +  G + +YI I  DIT +K+    IL N+ + NL  +  +Q+  +   
Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +      +  ++V+D
Sbjct: 387 STLGELAALTAAQGLTLSKAALLVVD 412


>gi|71736799|ref|YP_276642.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557352|gb|AAZ36563.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 969

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + ++  A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  + +
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKALANHVVE 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G +S +EF
Sbjct: 700 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  +++  +   I SW ++ N+  + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     +  L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    + P+       ++K    L 
Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    ++   S      L              A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492
                 +   +          + I++     +                 E R+     + 
Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    I P+ +  G + +YI I  DIT +K+    IL N+ + NL  +  +Q+  +   
Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +      +  ++V+D
Sbjct: 387 SALGELAALTAAQGLTLSKAALLVVD 412


>gi|75759044|ref|ZP_00739151.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493443|gb|EAO56552.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 931

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 270/562 (48%), Gaps = 11/562 (1%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +R         D V+  ++      +     ++    +        + + +I  
Sbjct: 374 ALSKSEQRYKSLFEDHPDAVFSLNMNGIFQQSNKACESLF--TAYYCEVASYSLVHFIDS 431

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D +  +  L      +   L  E R +  +  ++++ I + P    N +++   GIA D
Sbjct: 432 KDHELLKKALQITKEGKPQTL--EVRTKEQEGYYYYLHITLIPTF-INKEVVGMFGIARD 488

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   +  + +   AF D LTG+PNR+ F   L  IL+ + T+ N    VM +D+D++KK
Sbjct: 489 ITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNAN-DVAVMFLDLDRFKK 547

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L+ +  R+   L+  D++AR  G+ F I+L    +       A  + 
Sbjct: 548 INDRLGHDVGDLLLIEVANRLRGCLRSKDVVARQGGDEFTILLPEMYSEKSAIFIAEQIL 607

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P  +   E+++T SIG A +       +E++KNA++AMY AK  G N    F   
Sbjct: 608 TILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNADMAMYRAKANGKNRFVFFSKE 667

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +++   +  +L  A++ +E +L Y P +    ++I+GLEAL++W HPK G +S  +
Sbjct: 668 MSIAQNEIQFLXGELSKALQQNEFFLEYQPQVSTKTKDIIGLEALLRWKHPKLGIVSPXQ 727

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  ++L     +   W +Q     + + +N++       +L   +  
Sbjct: 728 FIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVVQFNHADLIPTISK 786

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDFGT  S L+YL   
Sbjct: 787 VLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDFGTGYSSLAYLTKY 846

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E + + L R  CD+
Sbjct: 847 PINTLKIAREFICGITNSPLEEAIVSSIITLSKELNLEVIAEGVETEEEWEFLHRQNCDH 906

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ   ++ P+    +  LL ++
Sbjct: 907 IQGFFISKPVSSKDVWMLLHKK 928


>gi|152998354|ref|YP_001343189.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Marinomonas sp. MWYL1]
 gi|150839278|gb|ABR73254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas sp. MWYL1]
          Length = 804

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 118/567 (20%), Positives = 249/567 (43%), Gaps = 19/567 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +          +  S + +   ++    +    +   +L     ++       +  I  
Sbjct: 236 ELAKSEAYFKAVLHQSSECMLLTNLKGQILDCNSETCRLLAYDKPTLLMLT---IQDIDP 292

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
               N                +  +    +      + +    ++        ++    D
Sbjct: 293 EQTPNLLREWADNSLGDPKIFEAHY--HRSSGVSFPVEVCGNIITLD--HEAHFLASFRD 348

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT++K   E +   A+ D LT +PNR+     +  ++  +  ++     ++ ID+D++K 
Sbjct: 349 ITQRKLDQEQVKFLAYYDALTNLPNRRFLNQNIEKVITTAQ-NNGYIGGLLFIDLDRFKN 407

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADF 633
           IND +G  VGD +LV  ++RI   L   DI  R+ G+ F +++    ++ +     +   
Sbjct: 408 INDSMGHHVGDALLVEASKRILACLSQADIAVRMGGDEFVLLIPVLGDNAEEAQSRVTLL 467

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   +     L + ++ ++ASIG + +       +++L+ A+ AMY AK  G N   
Sbjct: 468 AETLLSQLCQVFRLEQTDLFISASIGISLFPFDGANDAQILRQADTAMYEAKESGRNAYR 527

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +R    +   +R  +++ L  A+ N E YLVY P +     +++G EALI+W + + G 
Sbjct: 528 FYRQEMQQQVAERAALEKALHRAISNDEFYLVYQPQVN-EHGQLIGFEALIRWSNEELGL 586

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNEL 810
           +  + F+ IAEE+ +I  +  ++LE + + + +W+D    P    + INI+         
Sbjct: 587 VPPNRFIPIAEEIGLIYDVGNWVLENVCQQLKAWQDIGLPPTFKGVAINISPYQFAKECF 646

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E +  +I +T    S + L  +E +++ N       + RL++  I  ++DDFGT  S L
Sbjct: 647 VESVCDVIDRTQVDSSLLDLEITEGMLVENIASVAEKMWRLKEHNIRFSIDDFGTGYSSL 706

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL + P + +K + S +       +   I+ +I+ MA ++  +++A+ +  +++   L 
Sbjct: 707 RYLQHFPINQLKIDQSFVRDLTSDPQSHVIINTIVSMATHMNLSVLAEGVEHQVEKDILE 766

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
            MGC   Q    + P+  ++  + L  
Sbjct: 767 NMGCAKYQGYFFSKPVKADTATQYLSS 793


>gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille]
 gi|151281211|gb|ABR89621.1| signal transduction protein [Janthinobacterium sp. Marseille]
          Length = 898

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/630 (19%), Positives = 274/630 (43%), Gaps = 30/630 (4%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
              +  +     +    +N  +   +      +++L     +   +   +  Q   +  E
Sbjct: 278 FFVMVGLSKEDILLPYENNLALYRKIAVFGSALLLLFATAAMWMSIRLAWRKQQADAIRE 337

Query: 406 RQSLAVLGSGDIVWDWDIVRDR---------VTTTPDIATILGLASGSMHG-PIRNWLPY 455
              +A  G  +  +    +RDR         V      A+   +      G  + ++   
Sbjct: 338 TYRIATEGGNEGFYILLPMRDRNEFITDFQVVDCNEKGASFYNMNKDKFTGVKVSDFYSG 397

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                 D         +    G  + +++V    +         R    S          
Sbjct: 398 ---EYFDKVMQAYRIAMD--TGFFEDDYQV--PADSPVDAEWLKRKFVRSEN---GLAIT 447

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E K+    +   A +D LT +PNR  F+  L   L+ +  +      ++ ID+D 
Sbjct: 448 LRDISEPKRHEREMSRLATEDGLTALPNRHWFMSYLPKALENARANA-TMLAILFIDLDD 506

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND LG + GD +L ++ +R+  +L+  D + R+ G+ F +IL + ++  + A  A 
Sbjct: 507 FKNVNDTLGHSAGDQLLCTVAKRLRSVLRPSDKVIRIGGDEFTVILEAIHSEEEAAHIAH 566

Query: 636 AMRKSIAMPINLL----EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           A+ +++  P  +      ++  +  SIG + +         ++KNA++AMY AK      
Sbjct: 567 AINQALREPFEISRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIAMYAAKTGSKGQ 626

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +  + +   ++ +  +++L  A++  +  + Y P ++    +++G+EALI+W HP  
Sbjct: 627 FRFYDHTLYEDIKMRLNTEQELQQAIKEDQFLIYYQPRVQTQTGKLLGIEALIRWQHPTR 686

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  ++F+ +AEE  +I  I   +++++   + SW  Q  +  + + +N++     + +
Sbjct: 687 GLVLPNDFIGLAEESGLINPIGELVVDKVCAQLASWLKQ-GVEAVPVSVNVSPHQFNEGK 745

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           + + + A ++K     S +++  +ES +M N       L  +  +GI + +DDFGT  S 
Sbjct: 746 VKKSIAASLAKHGIPASLLEIELTESAMMRNIGDIFDELTAINAMGIKVHVDDFGTGYSS 805

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L  +  D +K + +  +  G  +       +I+ MAK +   ++A+ +     +  L
Sbjct: 806 LSLLQRLDMDILKIDQAFTSQLGRGKDGEIFFTAIVSMAKALGMRVVAEGVETLEQLHIL 865

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             + CD +Q  +VA PL  ++I  +++++ 
Sbjct: 866 QTLSCDEVQGYYVAWPLPADNIADIIRKQN 895


>gi|296390786|ref|ZP_06880261.1| hypothetical protein PaerPAb_21643 [Pseudomonas aeruginosa PAb1]
          Length = 827

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 120/576 (20%), Positives = 235/576 (40%), Gaps = 15/576 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+    G+I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 333 SSVPVTLVGAPIH-RGGEITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           I  +   +    IA+ +     ++ L  +G DY Q 
Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQG 786


>gi|94263469|ref|ZP_01287282.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93456199|gb|EAT06338.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 535

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 122/504 (24%), Positives = 220/504 (43%), Gaps = 27/504 (5%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK-------KSL 526
              G+       R  D    ++     P+   +  I   +    DIT+ K          
Sbjct: 29  EDGGQHTAIHIHRDKDGNPIYVETNAYPLYRGDDQIYAVVETIRDITQMKVIEAEKQARE 88

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LT +PNR+   DRL      S         V+++D+D +K +ND  G  
Sbjct: 89  DEVHQLAFYDFLTNLPNRRLLQDRLEQAFASSERSGQY-GAVILLDLDNFKNVNDTRGHR 147

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSI 641
            GD +L    RR+ E ++  D +ARL G+ F I+L +     E    +++  A  +R ++
Sbjct: 148 TGDLILQMTARRLRETVREDDTVARLGGDEFVILLSNLSTRSETAISRVSRVAEKIRLTL 207

Query: 642 AMPINLL---------EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           A P  L            E  + +S+G   +   + ++  + K A+ AMY AK  G N  
Sbjct: 208 ARPFQLDTPEQGGPSESGEFHLGSSLGITLFHGHEESTDNLFKYADTAMYQAKEAGRNTA 267

Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  +  +   +   ++ DL  A+      L Y P +      ++G EAL++W HP  G
Sbjct: 268 RFFDPAMQKALEESETLERDLRQAIAEERFELYYQPQV-GAAGHLLGAEALLRWYHPSRG 326

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+ ++EE  +I  I  ++L+   R + +W     +    + IN++++       
Sbjct: 327 PVSPLSFIPLSEENGLILPIGRWVLQEACRQLAAWSRSFPVGDFRLAINVSARQFHQPGF 386

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +Q +I+     P RIKL  +E++V+   + +   + +L+  GI   +DDFGT  S L
Sbjct: 387 VDEVQEIIAAARVEPRRIKLELTETLVLAKLDDTISKMRQLQAAGIGFAMDDFGTGYSSL 446

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L  +P + +K + + +          AI  +II M + +   I+A+ +     ++ L 
Sbjct: 447 AKLKQLPLEQLKIDRAFVRDLETDPHDAAIAATIIAMGRTLGFEIVAEGVETAAQLQILQ 506

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
             GC   Q  +   PL      +L
Sbjct: 507 SQGCGIFQGYYFNPPLPAAKFERL 530


>gi|313105738|ref|ZP_07792001.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa
           39016]
 gi|310878503|gb|EFQ37097.1| hypothetical protein PA39016_000110035 [Pseudomonas aeruginosa
           39016]
          Length = 818

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 123/586 (20%), Positives = 241/586 (41%), Gaps = 15/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+    G+I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 333 SSVPVTLVGAPIH-RGGEITGVVLLLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTVQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I  +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796


>gi|192290828|ref|YP_001991433.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
 gi|192284577|gb|ACF00958.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris TIE-1]
          Length = 673

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 145/672 (21%), Positives = 283/672 (42%), Gaps = 41/672 (6%)

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMK------GYERAVLLIPAWILIFIWFIGLWM 356
                 +   ITLA+++        Y G++      G  R   +I            +  
Sbjct: 6   SAPDAHTWGMITLAAVLCALGVVAAYGGLRSIRVSEGKGRRHWIIATCFASLSAVAAVVA 65

Query: 357 AITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIFSDGER---QSLAV 411
                  +  + P +   L++  ++   GF  +   L++    +   +  ER       +
Sbjct: 66  LALLAASDAPLAPTIALVLMIGSVIATTGFASLAVWLSSIAGRRTQLTLAERDMVLDAIL 125

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHIN------DRDNF 464
             +      +D V            I G+  G  + G        +  N      D+   
Sbjct: 126 NDAARGFCLFDAVGRLQLWNEAFLDIYGIPPGREIAGHSLRRTLVVMQNSGNFVSDKRQL 185

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +  +        L  E R    D +   + +R       NG    +I   +D+T+ K+
Sbjct: 186 IELGAALASGGPASLVAELR----DGRHIRIDLR----RLPNG---GWIAKHSDVTDHKQ 234

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + +     A  D  TG+PNR +F DR+   ++ +   D     V+ + ID++K+INDV G
Sbjct: 235 AEQRFAYLALHDVATGLPNRAAFNDRIVQSVEQARRFDG-SFAVIRLGIDRFKEINDVFG 293

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AVGD VL  + RR+ +   +   LAR  G+ F I+   +  +  I D    + +     
Sbjct: 294 QAVGDAVLAEMARRLADTCHWG-FLARPGGDEFSIVTPPDAAADSIQDVCRQLTELCDTE 352

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
             +    + V A+ G + +      +  ++ +A++A+Y AK   RG   +    +     
Sbjct: 353 FEVDGHRVRVGATAGVSVYPRDGDDADTLIAHADVALYRAKTEQRGTVCLFEPAMDLQIR 412

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  ++ +L +A+E  +  + Y P       EIVG EAL++W HP  G +S + F+ +AE
Sbjct: 413 EKRALQRELAVALEQRQFEIHYQPQAS-TSGEIVGFEALLRWRHPVRGMVSPALFVPLAE 471

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  I+ ++L  +  +  SW       P+ I +N +  D    ++   +  ++ +T 
Sbjct: 472 ETGQIGPIDEWVLRSVCAEAASWAK-----PLAIAVNFSPLDFRRFDVPALILQILLETG 526

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SR+++  +E V++ +   +  +L +++ +G+ + +DDFG   S LSYL   PFD +K
Sbjct: 527 LEASRLEIEITEGVLIDDFAGAIAILRKIKNLGVRVAMDDFGAGYSSLSYLQSFPFDKIK 586

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + +      +  +  AI+ +I+ +A+ ++  +IA+ +  E  +  L + GCD +Q   +
Sbjct: 587 IDQAFTRKLETNPESAAIVEAILSLARTLKLPVIAEGVETEKQLAFLAQAGCDEVQGYLI 646

Query: 941 ASPLGFNSILKL 952
             P        L
Sbjct: 647 GRPQPIAHYRDL 658


>gi|34496296|ref|NP_900511.1| hypothetical protein CV_0841 [Chromobacterium violaceum ATCC 12472]
 gi|34330292|gb|AAQ58516.2| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 606

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 128/569 (22%), Positives = 253/569 (44%), Gaps = 14/569 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D ++    +      V   D     +   P    +    +  M G   +    +    R 
Sbjct: 30  DSDQVQQILTLVDMAVLSVDEEGVIIDANPAACEMFAYTADEMAGMPVH--QLLPPALRQ 87

Query: 463 NFRTILDSFVGYRRGRLQYEFRV----RAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
               +L  FV       +   R        D     + I I       G+    I   +D
Sbjct: 88  PHAGMLKQFVASGDVIRRMASRSNVTGCRKDGSCFPLEISIAKFR--KGERWTLIATLHD 145

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++ Q ++ E +L +A  D LTG+ NR   L+RL   L  S         ++ +D+D +K 
Sbjct: 146 VSVQMRTQEELLWSATHDALTGLANRALLLERLERALQRSRRT-GAGLALLFVDLDNFKL 204

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G  +GD ++ ++  R+   L+  D +AR +G+ F ++         I+  A  + 
Sbjct: 205 INDTHGHGIGDQLIQAIAARLLTQLRPGDTVARFAGDEFVVLCEQVARPEDISALAERIN 264

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            ++   + L    +  TASIG A  +  +  + ++L++A++AM+  K +G +    F   
Sbjct: 265 AALREEVRLDGLALGCTASIGIAIGSGRQHLADDLLRSADIAMHAVKQKGRDGWRFFNDS 324

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  I + L  A+E  EL+  Y PI+      +VG E L++W H   G I  ++
Sbjct: 325 LHGQARQRFSIIQGLRSAIEREELHARYQPIVDADGVRVVGAELLLRW-HAAGGEIPPAQ 383

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE    I AI  ++  +       WR +      ++ +N++++ L +  L +    
Sbjct: 384 FITIAESCGAIVAIGYWVFRQACLAEADWRRRWGADAPYVSVNLSARQLDEARLADEFGR 443

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T  +P+RI L  +E+ +M + + +  +L  L  +G+ + +DDFGT  S L+ L  +
Sbjct: 444 ILRETGAAPARILLEVTETALMADIDVNLKVLQALNALGLRVAVDDFGTGYSSLAQLTRL 503

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + + + G   K+    ++R+II + K +   ++A+ +     ++ L ++GCD 
Sbjct: 504 PVEVLKIDRAFVDGIGRKQQDVTLIRAIIGLGKALGLKLVAEGVESGEQLQTLRQLGCDL 563

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963
           IQ      P+  +++  +++      ++ 
Sbjct: 564 IQGYLFHRPMPLDALQSVVEHSLSAARDA 592


>gi|330953153|gb|EGH53413.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 972

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 122/440 (27%), Positives = 233/440 (52%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   +   A  D+LT +PNR    + L  I+  + +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKRKLTYLAENDSLTHLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+   +    ++ARL G+ F I++  +  +   I   A  +  
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKGCMDENSVVARLGGDEFSIVVTHNVYSESLIKSLATHVVD 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  ++I V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +    
Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYNARM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G IS ++F
Sbjct: 700 NESLTRRLQTETLLRGALDRDEFILHFQPKVSLADGRISGLEALLRWNHPEQGMISPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++ ++   + SW +      + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKSWEENNIRL-VPIAINLSVRQLQVKGLAETVKHV 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLELLVAYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+  +    ++K 
Sbjct: 939 QGYLFSKPVISDECAAMIKS 958



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 60/211 (28%), Gaps = 24/211 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLMLMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFS--------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    +              + + +   +   A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFH 493
            T       S        L            +  +             E R+     +  
Sbjct: 275 VT-------SSQHSRAELLELTIDEVWTGMSSTTEPWQWAPENEVWNGEVRLSGRSGKVA 327

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           W    I P+ +  G + +YI I  DIT++K+
Sbjct: 328 WHRRTIIPILDDLGGVEKYICIDIDITDRKE 358


>gi|239834110|ref|ZP_04682438.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239822173|gb|EEQ93742.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 803

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 145/750 (19%), Positives = 294/750 (39%), Gaps = 40/750 (5%)

Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE---IALS 262
           L I        +    F       G ++I+F F + +++  +  L  W +       AL 
Sbjct: 68  LAISAFAGGVGVWATHFVAMLAYSGTVAIEFDFTATVLSAATAVLGFWLSLHLLKGAALK 127

Query: 263 SSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
            +L+  +   L     H       F+G++ I     + +  P +    A   L  +  ++
Sbjct: 128 YALMAAISATLSIAAMH-------FTGMSAIKAAADIHYDLPPIFVGGAISVLILLAAFW 180

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                    +     V  I A   +    +     +            +    +++ I  
Sbjct: 181 FVTNASGWSRILLPTVGGILAVCTLHFTAVASTELVPNPTLPAADPLGIGRLWLVVAIAA 240

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +     +  F     +D +  +     + D +         V      + ++  + 
Sbjct: 241 VVCSVALATISAVFIDRYMTDLKGFA---NATLDGLAVI-RDGGIVEMNARFSELMRRSE 296

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            S+ G   + L  +  +          +       R   + R+                 
Sbjct: 297 KSLMGIEPDTL-LLAADGLPVCARR--AEAIEAAPRFPNDERI----------FELAVHA 343

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G     + +  D+TE++ +   I   A  D LT +PNR  F +RL   +   + + 
Sbjct: 344 IEYQGRPCEVLAV-RDLTEKRAAQRQIEHMARHDALTDLPNRMFFEERLANAVARPSREP 402

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V+ +D+D++K +ND+ G A GD VL +++  +   +   D  AR+ G+ F I+ +
Sbjct: 403 ---FAVLALDLDRFKAVNDIFGHAEGDRVLKTVSSILKRCVNGIDTAARIGGDEFIILQV 459

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                      +  + ++  + +N +     V  SIG A + +    +  +   A++A+Y
Sbjct: 460 GVPQPRGARKLSEKILEAFRLELNTVLDPTAVGVSIGVALYPNDGKDAEAIRHAADIALY 519

Query: 683 HAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G      +     +   +R  ++ DL  A+   ++ + Y P+    D    G EA
Sbjct: 520 RAKTEGRGLFAFYSPEMDQEIRERRQLEADLRHAMVRGQIGIAYQPLFATSDGRCTGYEA 579

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP+ G I    F+ IAEE   I A+  ++L    R    W        + I +N+
Sbjct: 580 LVRWNHPERGQIPPDVFIPIAEETGTIVALGEWVLREACRTAAEWESH-----LSIAVNL 634

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +        L + ++++I++T   P+R++L  +ES +M +   +  LL R++K G+ + +
Sbjct: 635 SPVQFRLVSLPDTVRSVIAETGLDPTRLELEVTESALMKDRLTTLELLRRMKKSGVRIVM 694

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LS L   PFD +K + S +T         AI+R+I+ + ++++  ++A+ I
Sbjct: 695 DDFGTGYSSLSNLQSFPFDKIKIDRSFITSMETDVSARAIVRAIVGLGRSLDLPVVAEGI 754

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                 + +   GC+ +Q      P    +
Sbjct: 755 ETFDQHRMVIEEGCEQVQGFLFGRPANAPA 784


>gi|291301820|ref|YP_003513098.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571040|gb|ADD44005.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stackebrandtia nassauensis DSM 44728]
          Length = 868

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/653 (21%), Positives = 277/653 (42%), Gaps = 20/653 (3%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
             + +       +    +   +    A  +    + + +  +    A    L +  +   
Sbjct: 214 MLVLVWGAGCLVSAGAAWLARRFPGPATAVPLPRVDVAVTLVPAVGASATALYHGYVVGP 273

Query: 371 LV----GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           L        + +V ++    +   +    +++ +          V GS DI    D    
Sbjct: 274 LGPDAIITAMAVVGVLSVRQVLARIDVRRYARVLSDREAYYRSIVSGSSDITTVVDFDGR 333

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRV 485
                             ++G    +   +H +D       L + V    G R++ + R+
Sbjct: 334 MRFQAASAPWRCHADPTRINGVP--FTDMVHPDDAATVERQLTTLVAGEPGQRIRIDARI 391

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           + AD ++      +    + N  +   +    D+ E++     +   AF D LT + NR+
Sbjct: 392 KDADGEWRDTESIVADQRD-NPKVDGLVIRTRDVGERRALERELAKLAFTDPLTTLSNRR 450

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           + L  L + +       ++  T++ +D+D +K +ND  G  +GD VLV + +R+ E L+ 
Sbjct: 451 ALLRTLESDVA----GGSMPCTLLAVDLDGFKNVNDTRGHDIGDAVLVEVAKRLRESLRP 506

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWT 664
            D+ ARL G+ F ++L       +  + A  +   +A P        + +++SIG A   
Sbjct: 507 TDVAARLGGDEFAVLLWCP--PERGYEIAERLLAVLAEPYRFDGHASVFLSSSIGLAGC- 563

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
           ++      +L+NA+LA+  AK +G N +E++     +  R    ++ +L  A+   ELYL
Sbjct: 564 ATADDVQALLRNADLALRSAKQQGKNQIEAYDELFEKRVRRRNVLEHELHGAINRGELYL 623

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P+I L    +VG EAL++W HP  G +S  EF+ + E+  +   +  + L ++A  +
Sbjct: 624 EYQPVISLPHRRVVGAEALLRWQHPTLGAVSPGEFIPVVEDAGLSSDLATWTLGQVAERL 683

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+      P ++ IN++ + L        +   +      PSR+ +  +E  V  + +
Sbjct: 684 AVWKA--GGHPAWVSINLSPRQLHSRLFATDLAQALLSKGVPPSRLVVEVTEHDVAQDMD 741

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902
                LG LR  G+ + LDDFG   S L  L  +P D +K +  L+ GS E    +   +
Sbjct: 742 ILVAQLGALRGTGVRIALDDFGAGYSSLGQLHRLPVDILKIDRDLVAGSDEGAAPLADVV 801

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + + + +   +IA+ +  E  +  + + GC  +Q   +A P+    I  +L++
Sbjct: 802 VRLGERLGLAVIAEGVETETQLDVVKQAGCAMVQGYLLARPMAVAKIDAMLRD 854


>gi|313500073|gb|ADR61439.1| Sensory box protein/GGDEF family protein [Pseudomonas putida
           BIRD-1]
          Length = 818

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 130/625 (20%), Positives = 253/625 (40%), Gaps = 25/625 (4%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                   +++  L+  L+  + LI        + +     F+  +  + ER  + +   
Sbjct: 195 ALGEGSRMLLRVLLITNLLTAMFLIAIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTILD 469
           GD V   D+        P    +    SG   G   + L      +   + R     +L 
Sbjct: 255 GDAVITTDVEGSIGYMNPAAEQLTHWQSGQAQGLPLSALFSLVDEHAEEDGRSLVEQVLS 314

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +       +   R+   D     + +   P+ N +G +   + + +D+T++++ +  +
Sbjct: 315 GSLKGGSEHARLIQRL---DGSTVSINLVGSPILN-DGQVSGIVLVLHDMTQERQYIANL 370

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR+ F  RL   L+  A     R ++M +D+D++K +ND  G A GD
Sbjct: 371 SWQATHDALTGLANRREFEYRLEQALNDLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 429

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
           ++L  +   +   L+  D LARL G+ FG++L +     +       +R+ +        
Sbjct: 430 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCP-PDQAERIGEQLRQMVQSLHFVWK 488

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704
            R    T SIG      +  T    L+ A++A Y AK +G N V+ +         R   
Sbjct: 489 GRPFVTTVSIGLVHMAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 548

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +   + L +A+E +   L    I  L   E    +E L++        I  S F+  AE 
Sbjct: 549 MAWIQRLHVALEENRFCLYAQEIAPLKSFEGPGHIEILLRLHDESGRTILPSSFIPAAER 608

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822
             ++ A++ +++  +   I    ++    P+    IN++   + D++  E +Q L  +  
Sbjct: 609 YGLMTALDRWVVRNVFMVIRQCLEEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 668

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I    +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K
Sbjct: 669 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 728

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +          A++  I  +   +    IA+ +   +  + L  +G DY Q   +
Sbjct: 729 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 788

Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963
             P     +S+ +      PL++  
Sbjct: 789 ERPQVFTCDSLQRQRIAARPLLQRA 813


>gi|152993066|ref|YP_001358787.1| hypothetical protein SUN_1479 [Sulfurovum sp. NBC37-1]
 gi|151424927|dbj|BAF72430.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 776

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 148/692 (21%), Positives = 287/692 (41%), Gaps = 21/692 (3%)

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L  +R++  V        +   +LF  S  +  +   +    +               + 
Sbjct: 90  LWLDRYYTNVLLSGIIWGSSAFLLFPESNLFGQMILLLFLFAVG-FSSLGVLATKRDLLL 148

Query: 333 GYERAVLLIPAW-ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
            Y   +     W +      + L  A        ++  A      +I         Q  +
Sbjct: 149 SYIFVMYGPIVWRLFFLAGDLYLNFAYAVLSLVLVLILAANYYGKIINK--SLEDRQQFI 206

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    ER       +   ++ ++              +  + +      I  
Sbjct: 207 DIKVSHDKLR---ERFFSLFERAPVGIYYYNESLILQDVNQQFRKMSNIKNKEDLLGISL 263

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDIL 510
           +       D      + +     + G  +  F++ +   +   ++ +   PM NS GDI 
Sbjct: 264 YEDI----DDAKILEVHEKVFKRQTGDYRGPFQMISGTIEENLYVDLSTIPMLNSEGDIT 319

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             I I NDIT +  + E +L NA+ D LT IPNR   +D+L   L            ++ 
Sbjct: 320 GGIAIVNDITNEVTAQEKMLRNAYYDMLTNIPNRTLLMDKLQN-LAEVKKSTKNYGALLF 378

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----N 625
           +DID +KKIN   G  +GD V+  +  RI E +   + LAR++G++F I++ +       
Sbjct: 379 LDIDNFKKINTTFGQDIGDKVIKQVAHRIEEFIGSHETLARVAGDKFVILIPNIGMDENT 438

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                 ++     +    PI ++ ++  V+ SIG   +  ++ T+ ++LK AE AMY AK
Sbjct: 439 AKDATTEYVEKFNQHFTRPIKVVGKDHHVSFSIGAILFADTEATAFDLLKRAETAMYEAK 498

Query: 686 H--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              RG        +S+   +++M++ D+  A+++ E  + Y P +++   EI+G EALI+
Sbjct: 499 KSTRGSMKFYQDSMSTQVEEQLMLENDIHRAIKDDEFEMYYQPQLKVKTNEIIGAEALIR 558

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIAS 802
           W HP+ G +    F+ +AEE  +I  +  ++ +RI +D+           +  I INI++
Sbjct: 559 WHHPEKGLVLPDAFIQLAEESGIIIKLEEWIFDRIFKDVKEMNRDMGGFSLHHISINIST 618

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              L+    E +  L+ +    P   +L  +ES ++ N + +   +  L+  G + ++DD
Sbjct: 619 VHFLEPHFVEKIMLLVKEHKVKPEWFELEITESGIIRNIDDAIRKIRELKGFGFAFSIDD 678

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           FGT  S LS+L  +P D +K + S +    +    I+ +++ + +     I+A+ +    
Sbjct: 679 FGTGYSSLSHLKELPVDVIKIDQSFIRNMNQDDEMIVEAVVAIGQKFHLGIVAEGVENND 738

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +K L  + CD  Q    +  +       LLK
Sbjct: 739 TLKYLQHVDCDTYQGYLASMAVPLKDFEALLK 770


>gi|117924195|ref|YP_864812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
 gi|117607951|gb|ABK43406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Magnetococcus sp. MC-1]
          Length = 577

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 139/572 (24%), Positives = 258/572 (45%), Gaps = 15/572 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
             G   +            +  S + +   D              + G+  GS+ G    
Sbjct: 7   QAGVAHKAKEQSLRMIKTLLENSHEGILILDARGTVHQANQAFMNMTGMKKGSLVGRH-- 64

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  +   +             ++ G  Q        D++   + +++  +   +G +  
Sbjct: 65  -ILRLMPEEFRERLLEEIREELWQSGFWQGSLSQSLGDDKQLTVDLKVSAVLPPDGKVSY 123

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV- 570
           YI      +              +D+LTG+P+R  F DRL   + L+    N    + + 
Sbjct: 124 YIAQLRGSSVVSSPPPPKD---NRDDLTGLPSRILFEDRLQQAISLAVRHKNCVGAMFLG 180

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D ++ K I + LG    D+++  +  R+ + L+  D +AR++ + F ++L   N     
Sbjct: 181 LDTERIKLIRNSLGQTATDELIREVAVRLDDCLRTTDSVARIAEDSFALLLTDLNGHKDA 240

Query: 631 AD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  + +S+  P+ L  + + V A++G   +     T  E+L NAE A+ HA+H
Sbjct: 241 VRNSSVVARKVYESLVKPVILNGQPVEVNAAMGITLFPQDGSTPRELLMNAETALNHARH 300

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG N+ + F         +R  ++  L  A+E +EL L Y P + L D  I+G EALI+W
Sbjct: 301 RGWNNYQFFSSEMTEAARERFELETHLRQAIEKNELVLYYQPQVDLHDGTIIGAEALIRW 360

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS ++F+ +AEE  +I  I  +++    R I  W  +  + P+ + IN+++  
Sbjct: 361 KHPERGLISPAQFIPVAEETGLIVPIGEWVMRTAIRQIAIW-KELGVTPVRVGINLSALQ 419

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L   ++ L+++    PS + L  +ES +M +  R+  +L R+  +G+ L++DDFG
Sbjct: 420 FKRQNLAALVEELLNEHDIDPSLVDLEITESAIMDDVGRAIEMLKRISALGVKLSIDDFG 479

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           T  S LS L   PF T+K + S +T   +    AI+ +II MA ++E T+I + +     
Sbjct: 480 TGYSSLSQLRQFPFQTLKIDRSFVTDLESSGDKAIVSAIIAMAHSLEQTVIVEGLETSAQ 539

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +  + C+ +Q    + PL       LL+E
Sbjct: 540 LTIMKELNCNEMQGFLFSKPLPAEEFTALLRE 571


>gi|329910008|ref|ZP_08275190.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546318|gb|EGF31340.1| hypothetical protein IMCC9480_42 [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1185

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 230/574 (40%), Gaps = 13/574 (2%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                + + + A       + +  ER  + +   GD V   D+        P    + G  
Sbjct: 611  FILGISEDITALHAEQLALQASEERLRVTLNSIGDAVITTDMQARVTYLNPVAERMTGWL 670

Query: 442  SGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMII 497
             G   G     +  I H +D       +   +                         +  
Sbjct: 671  LGDATGRPLTEVFRIYHRDDDVPLSDPVAQVIATGVASSTPGSAMLAGPGPGGTRAAIED 730

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
               P+ ++   +L  + + +D++E  K  E +   A  D LTG+ NR+ F  RL   +  
Sbjct: 731  MASPIRDAGEVMLGVVLVFHDVSEAHKMAEQMTHLAAHDALTGLLNRREFEHRLEQAVAS 790

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            ++ D     TVM +D+D++K +ND  G   GD++L  LT  +   L+  D LARL G+ F
Sbjct: 791  ASRDSQEH-TVMYLDLDQFKIVNDTCGHVAGDELLRQLTTLLHAKLRQSDTLARLGGDEF 849

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G++L     +  +       +         L++   +  SIG  ++ +   T   +L+ A
Sbjct: 850  GVLLEQCGTAPALRVAEQLRQTVSDFHFVWLDKSFPIGVSIGLVTFGAGMTTPD-ILRMA 908

Query: 678  ELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            + A Y AK +G N V  +   +     R  ++     L  A++     L   PI+ L   
Sbjct: 909  DSACYVAKDKGRNRVHVYSEENAELVHRQGQMSWVARLQQALDEDRFVLFCQPILGLGQH 968

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
                 E L++        I    F+  AE   ++ +++ +++ R      + R      P
Sbjct: 969  HGRHEELLLRLRADDDTLIPPMAFIPAAERYGLMPSLDRWVIRRALAT-HALRHPPGSVP 1027

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + + IN+++  + D      + A  + T   PS I    +E+  + N   + +L+  L+ 
Sbjct: 1028 VLVAINLSATSICDETFLPFVLAQFTLTGVPPSEICFEITETAAIANLGEATVLIRALKA 1087

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            IG   +LDDFG+  S  +YL ++P D +K +GS +          A++ +I  +   +  
Sbjct: 1088 IGCKFSLDDFGSGMSSFTYLKHLPVDYLKIDGSFVKDMMDDPVDRAMVEAIHRIGHVMGL 1147

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
              IA+ +  +  +  L  +G D+ Q   +  P+ 
Sbjct: 1148 QTIAEFVESDAIMAALREIGVDHAQGYAIGKPVP 1181



 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-- 482
              V        + GL++ ++ G     L          F  + D+       RL     
Sbjct: 527 GQFVLWNKAAERLTGLSAATVIGNTNRDLF------APGFAAVYDAHDHEIMVRLSSVGI 580

Query: 483 --FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
               VRA D     +     P+ ++ G +   +GI+ DIT      
Sbjct: 581 PSHPVRAQDGTARILRTHSLPVFDAAGKVDFILGISEDITALHAEQ 626



 Score = 41.5 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 41/227 (18%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV--------LATGYFSQ 398
           +  W I   +    +L + I        LV++  +   T    +                
Sbjct: 308 LAWWAIDRQLRPLDQLASRIDAVRQRPSLVMLPAVYAATEFGRLAQSFDELMRERLLADS 367

Query: 399 GIFSDGERQSLAVLGSGDIVW----DWDIVRDRV-----TTTPDIATILGLASGSMHGPI 449
                 E    A     D  +    + D+  +           +   +LGL    + G  
Sbjct: 368 RYQRSAEELRAATDSKLDAFFVLQAEHDVAGEVTDFRFSYINDNGLQLLGLKREQVIGQG 427

Query: 450 RNWLPYIHIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              L  ++  D   D +  +L S +      LQ EF +     Q  W+  ++ P+++   
Sbjct: 428 LCELLPVNRTDGFFDRYVQVLQSGIA-----LQEEFAIDTPGIQATWLAHQVTPLAD--- 479

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                   + DI+++K+    +             NR      +  +
Sbjct: 480 ---GVAITSRDISQRKRDELELST-----------NRAFLQSLIDHL 512


>gi|330988240|gb|EGH86343.1| sensory box protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 969

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + ++  A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  + +
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKTLANHVVE 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+  +E  L + P + L D  I GLEAL++W+HP+ G +S +EF
Sbjct: 700 NESLVRRLQTETLLRGALARNEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  +++  +   I SW ++ N+  + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     +  L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    + P+       ++K    L 
Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    ++   S      L              A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492
                 +   +          + I++     +                 E R+     + 
Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    I P+ +  G + +YI I  DIT +K+    IL N+ + NL  +  +Q+  +   
Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +      +  ++V+D
Sbjct: 387 STLGELAALTAAQGLTLSKAALLVVD 412


>gi|78358456|ref|YP_389905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220861|gb|ABB40210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 935

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/562 (24%), Positives = 253/562 (45%), Gaps = 15/562 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      +G+ +   D     V      + I G A   +       L    
Sbjct: 255 RRSAEELRLAAKVFEHAGEGILITDAQGHIVNVNRAFSVITGYAREEVMAQTPRLLESDR 314

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++T+  +   +       E   R  +      ++ I  + +  G+I  Y  + +
Sbjct: 315 YDD-EFYQTVWQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 371

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K++ + +   A  D LTG+PNR    DRL   +  +     +   V+ ID+D +K
Sbjct: 372 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 430

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND  G AVGD +L  L+RR+ ++L+  D LARL G+ F  +L+   +          +
Sbjct: 431 EVNDQHGHAVGDKLLSVLSRRMTQVLREDDTLARLGGDEFVAVLLDLPDISVSVPILDRL 490

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  A P+ + +    V+ASIG + +   +   + ++L+ A+ AMY AK  G N    F 
Sbjct: 491 IEVAAQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 550

Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R+ R   +E   +  A+ N +  L + P + +   E++G EALI+W HP  G +S 
Sbjct: 551 TEKDRTLRTRHEELDSIEKALANGQFLLYFQPEVNMRTGEVLGAEALIRWQHPTRGLLSP 610

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ I E   +   +  + +E     I  WR      P  I +NI ++ LL  +    +
Sbjct: 611 ASFIPIIENHPLGIDVGEWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 668

Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++S+     P  ++L   E+  + +  +   L+    ++G+   LDDFG+  S L+YL
Sbjct: 669 RGMLSRHPGAQPQDLELEILETSAVEDFVQVSQLMALCGRMGLRFALDDFGSGYSSLTYL 728

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +   +         IAIL +++ +A++     IA+ +      + L RMG
Sbjct: 729 KRLPAHLLKIDQDFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIQHGEMLLRMG 788

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C++ Q   +  P+  +   + L
Sbjct: 789 CEWGQGYAIGHPMPAHEFEQWL 810



 Score = 75.0 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGL 440
             ++ +       Q + S   ++         +++ +    D        +  I  I G+
Sbjct: 115 GTVEDITDLKRVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSHFPYASARIQEIYGV 174

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A   +          +H  DRD     + +  G        E+RV+  D +  W+     
Sbjct: 175 APEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEAS 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           P +  +G IL + G  +D+T +++S E +   A
Sbjct: 234 PEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 265



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W  D+    +T + +   +LGL  G+       +L  IH  DR  F    D+ +  + 
Sbjct: 22  GSWHLDLGSQLLTCSDEACRVLGLDVGAPIA-FERFLQCIHPEDRPLFDRAWDAAMCGK- 79

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-------SLEGI 529
             L   +R+  +  Q  W+ +R     +++G      G   DIT+ K+            
Sbjct: 80  -SLDLRYRIV-SGGQVRWIHLRATFKGDASGRPRAADGTVEDITDLKRVEQALNSMRRQR 137

Query: 530 LCNAFQ 535
              A  
Sbjct: 138 EELASH 143


>gi|170690417|ref|ZP_02881584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170144852|gb|EDT13013.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 667

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/542 (24%), Positives = 250/542 (46%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+   ++ G    W  ++   D       +  F   R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSSEDGAASSQNIAGFF-NRGVSYEV 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E RV+    +  ++       S S  D    I    DITE++ + E +   A  D+LTG+
Sbjct: 187 ERRVKTLHGERLFLFRNKFVQSGSGIDEQYLICSGTDITEERLAQERLRQLANTDSLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR +  D + T ++ +A        V+ +D+D +KK+ND  G   GD ++  ++  IG 
Sbjct: 247 PNRNAIQDYIRTAIEEAA--PGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAIGM 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++  + ++   A  + + +  P +L   E+    SIG A
Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAHELEATAQRILERMRTPFSLGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +         ++++A+ AMY AK  G      F     R   + + +  +L   ++  +
Sbjct: 364 RYPEHGDNLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLDEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G+EAL++W+ P+ G I  +EF+  AEE  +I  +  +++E   
Sbjct: 424 LTLHYQPKLVLSTGVVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVMET-- 481

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               + + +A+   + I IN++++ L+D  +       ++     P  + +  +ES ++ 
Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFTEALAAANLEPCLVDVELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +   +  L+   R+IG  + LDDFGT  S LS LG IP D +K + S +          A
Sbjct: 542 DEAAAIDLIKHFRQIGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ +   ++A+ I  E +   +  +G +Y+Q    A P+      + L++R 
Sbjct: 602 LVRSMVVVAQELGFKVVAEGIETESEEAFMKGLGVEYVQGYLYAHPMPAADFERWLQDRQ 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|170692794|ref|ZP_02883956.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142450|gb|EDT10616.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 647

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 223/448 (49%), Gaps = 10/448 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR++F D L   L  +   D  R  +M++D+D +K +ND L
Sbjct: 190 RAEKDLEYLASTDPLTDLPNRRAFYDELKARLHKAHAADK-RVALMMVDLDNFKIVNDTL 248

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +   +  +++  D+++R+ G+ F +++  + + ++    A  + ++++ 
Sbjct: 249 GHGAGDELLKQVADALRNVVRPNDLVSRIGGDEFAVVIGPDASRVRARATAGRIARNLSR 308

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  L   +  VTAS+GF+ +       +E++ NA++A+Y AK RG +    F+       
Sbjct: 309 PFILHGSDSVVTASVGFSVYPEDTGEMAELVSNADIALYSAKSRGKSIAVEFQSEMTAEA 368

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  I+ +L  AV+   L +VY P    +   ++G EAL++W HP  G IS +EF+ IA
Sbjct: 369 QRRARIEAELRKAVDQDGLQIVYQPQFDCLSGRLLGAEALVRWTHPSEGPISPAEFVPIA 428

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I ++  ++L R  RD  +W        + + +NI+++ L        +   + K+
Sbjct: 429 ENSDLIVSLGRWVLWRACRDAANWNA-GRNAGVHVAVNISARQLRAEGFTNEVCDALEKS 487

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S ++L  +ES +M N       +  LR  G+ L+LDDFGT  S LSYL   P  ++
Sbjct: 488 GLPASLLELELTESQLMSNMSVGIQAMQELRAAGVRLSLDDFGTGYSSLSYLQSFPVHSI 547

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +         I+ +II MA +    ++A+ +     ++ L    CD +Q     
Sbjct: 548 KIDRSFICPLPNGGQPIVTAIISMAHSFGLLVVAEGVEYPAQLEWLCDAHCDVVQGFLTG 607

Query: 942 SPLGFNSILKLLK------ERFPLVKNT 963
            P+    +L +++      E   + + +
Sbjct: 608 HPMSLEQLLAIIRMEEDRGEHKRVGRRS 635


>gi|330976131|gb|EGH76197.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 725

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 127/587 (21%), Positives = 230/587 (39%), Gaps = 18/587 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     ++   +     +        R       S D +   D     ++       I 
Sbjct: 147 VLQDLAVMVIERMELRRLTLENEDSHTRFMNITSTSPDAIICSDSKNRIISWNNSAELIF 206

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWM 495
           G  S    G   +    I    R      L          +            D     +
Sbjct: 207 GHRSEDAMGKPLDI--IIPPEMRSRHHAGLSRVAAGGPASIIGKSINLTAIHRDGHTLPI 264

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +       G+      I  DIT+  ++ + +   A  D+LTG+ NR +   R+    
Sbjct: 265 ELSLS-QWTYAGEPQFG-AIIRDITQLVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC 322

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                D  L   +++ID+D +K +ND LG A GD VL   + R+ E +    +++RL G+
Sbjct: 323 -----DAQLSAAILLIDLDGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGD 377

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F + L    +  K     +A+   I  PI   +  I + ASIG +  + +     +ML 
Sbjct: 378 EFVVFLSDTADPDKAIKLGLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLG 437

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LA+Y AK  G + V +F     ++      +   +  A  N E  L Y P +RL D 
Sbjct: 438 NADLALYQAKSDGRSLVRTFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADG 497

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EALI+W+HP  G +S + F+   E   +   +  ++L         WR+      
Sbjct: 498 RITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAVPVGEWILRSACEQAAKWRNTGCEE- 556

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +N+ +      +  E +++ +         ++L  +E++++ N +R    L  LR 
Sbjct: 557 FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRS 616

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ +  DDFGT  + LS L   P   +K + S ++G   ++K   I+ +++ +A     
Sbjct: 617 LGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNL 676

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERF 957
            + A+ I        +    CD  Q      P+  +    + +    
Sbjct: 677 QVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPAHDFTERYISSHN 723


>gi|120556691|ref|YP_961042.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326540|gb|ABM20855.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Marinobacter aquaeolei VT8]
          Length = 755

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 223/443 (50%), Gaps = 6/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I ++K     +      D LTG+ NR+ F++ L   ++++      +  ++++D+D++
Sbjct: 302 QEIDQRKAIQVDLQRLESTDTLTGLANRRFFMEDLAHTINIADRQMR-QIALVMMDLDRF 360

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + +ND LG   GD++L+ ++ R+  L     ++A   G+ F +     ++   +      
Sbjct: 361 QMLNDSLGHQFGDELLIKVSERLNGLSNERVLVAYSGGDEFMVCQQQVDDIDDVIHLLGQ 420

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +++  A P  +     ++TA++G A +  S + +  +L+NA++A+Y AK +G N  + + 
Sbjct: 421 IKQCFAAPFEVQGEAHSITATMGVAVYPQSGLDADTLLRNADIALYRAKEQGRNTYQFYT 480

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 + + ++   DL  A+ N E  L + P + L   EI  +EALI+W HP  G +  
Sbjct: 481 EGMQDREVLRLELDRDLSQALANDEFVLYFQPQLNLDTGEINSVEALIRWQHPVRGLLPP 540

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE   I  I  +++    R +  W        + + +N++ ++L D+ L + +
Sbjct: 541 VEFIPLAEESGRITEIGRWVVLAACRQLARW-KGTPCEHLRVAVNLSGRELDDDSLIDHI 599

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           ++ ++     PSR+++  +E + + N E +   L +L ++G+ L +DDFG   S L YL 
Sbjct: 600 RSTLASEAVDPSRLEVELTEEIFIQNIEHNLNQLSQLHQLGVHLAIDDFGVGYSSLGYLR 659

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +T  TE      I R++I +A N+   ++A+ +  E  +  L    C
Sbjct: 660 DFPVDLLKIDRSFITDVTERHDDAVITRAVINLAHNLGIQVVAEGVETEEQLNFLKAHRC 719

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           +  Q   ++ P+    + + L E
Sbjct: 720 NLAQGYLISRPIPAADLERALAE 742


>gi|325276964|ref|ZP_08142645.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
 gi|324097906|gb|EGB96071.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas sp. TJI-51]
          Length = 818

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 129/625 (20%), Positives = 253/625 (40%), Gaps = 25/625 (4%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                   +++  L   L+  + LI        + +     F+  +  + ER  + +   
Sbjct: 195 ALGEGSRMLLRVLLFTNLLTAMFLISIAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-----NFRTILD 469
           GD V   D+        P    +    +    G   + L  +     +         +L+
Sbjct: 255 GDAVITTDVEGCIGYMNPAAEQLTHWQAAQAQGLPLSALFSLVDEHAEENGTSLVEQVLN 314

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +       +   R+   D     + +   P+ N +G +   + + +D+T++++ +  +
Sbjct: 315 GSLNGGAEHARLIQRL---DGSTVSINLVGSPIVN-DGQVAGIVLVLHDMTQERQYIANL 370

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR+ F  RL   L+  A     R ++M +D+D++K +ND  G A GD
Sbjct: 371 SWQATHDALTGLANRREFEYRLEQALNGLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGD 429

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
           ++L  +   +   L+  D LARL G+ FG++L +  +  +    A  +R+ +        
Sbjct: 430 ELLRHICAVLQSGLREGDTLARLGGDEFGVLLENCPS-DQAERIAEQLRQLVQSLHFVWK 488

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDR 704
            R    T SIG      +  T    L+ A++A Y AK +G N V+ +         R   
Sbjct: 489 GRPFVTTVSIGLVHMAQAPSTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGE 548

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +   + L +A+E +   L    I  L   E    +E L++        I  S F+  AE 
Sbjct: 549 MAWIQRLHVALEENRFCLYAQEIAPLKTFEGPGHIEILLRLHDESGRTILPSSFIPAAER 608

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTL 822
             ++ A++ +++  +   I    D+    P+    IN++   + D++  E +Q L  +  
Sbjct: 609 YGLMTALDRWVVRNVFMVIRQCLDEGREGPLSTCAINLSGSSIGDDKFLEYLQRLFVEYA 668

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I    +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K
Sbjct: 669 IPPRMICFEITETSAIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLK 728

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +          A++  I  +   +    IA+ +   +  + L  +G DY Q   +
Sbjct: 729 IDGSFVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLI 788

Query: 941 ASPL--GFNSILKLLKERFPLVKNT 963
             P     +S+ +      PL++  
Sbjct: 789 ERPQVFTCDSLQRQRIAARPLLQRA 813


>gi|120612138|ref|YP_971816.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120590602|gb|ABM34042.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 132/585 (22%), Positives = 247/585 (42%), Gaps = 28/585 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           G   + ++    +    +         A+          D     +        I     
Sbjct: 301 GGFTMAYLRRISHARNDLARSKATLEQALGSMVSGFVLLDSRHRVLQWNQRYEEIFPWLR 360

Query: 443 GSMH-----GPIRNWLPYIH-INDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHW 494
             M        +       H  +  +  R        +  R  R  +E  +   +  F  
Sbjct: 361 SMMQVGLPFRSVLEATSRYHLPDADEAMRREWVEQRLLLQRETRGTHEQML--PNGHFIQ 418

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  R  P           +   +D+TE +++   I   AF D LTG+PNR+  LDRL   
Sbjct: 419 ITERATPE-------GGLMITYHDVTEMRRASAEIESLAFYDPLTGLPNRRLLLDRLHQA 471

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +         ++ +D+D++K +ND  G  +GD +L  +  R+    +  D +ARL G
Sbjct: 472 LATAQRSRQF-GALLFLDLDQFKTLNDTQGHEMGDLLLQQVALRLRVCARPADTVARLGG 530

Query: 615 NRFGIILISE-NNSLKIADFAIAM----RKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           + F +++    ++  + A     +     +++A P +L ++    T S+G A +   + T
Sbjct: 531 DEFVVMMSDLSHDRQEAASITRRIGEKILQAVAQPYHLQQQMHQHTCSVGAAIFGDQRQT 590

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
           ++++LK A++AMY  K R GN +  F             ++ DL  A+   E  L Y P 
Sbjct: 591 AADLLKQADIAMYQVKARRGNALCFFDPQMQVVISQRARLETDLQAAIAAQEFVLYYQPQ 650

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                 E++G E L++W HP  G I+  EF+ +AEE  +I  I  ++L      + +W  
Sbjct: 651 FS-RAGEVIGAEGLLRWKHPGRGLIAPGEFIGVAEESELIVPIGQWVLRTACVQLAAWSR 709

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
              +  + + +N++++     +    +   +      P  ++L  +ES+V+ N + S   
Sbjct: 710 DPRLAHLHVAVNVSARQFRHPDFVASVVEALQHAGVKPHLLELELTESLVLDNVDDSVAK 769

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  LR  G+  ++DDFGT  S L+YL  +P   +K + S +    ++     I+++II M
Sbjct: 770 MHLLRTKGVRFSVDDFGTGYSSLAYLTRLPLHQLKIDQSFVRNLGKRPTDDVIVQTIIGM 829

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           A+N++  +IA+ +  +     L R GCD  Q    A P+     L
Sbjct: 830 ARNLDLEVIAEGVETQEQRDFLDRHGCDLYQGYLFARPMPAQDFL 874


>gi|148258088|ref|YP_001242673.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410261|gb|ABQ38767.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 777

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 132/694 (19%), Positives = 285/694 (41%), Gaps = 47/694 (6%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           +W  +  +      A + +   +      + A+   +     ++    +I     + + R
Sbjct: 91  KWEMRYQFGAILYAAALGLWCAV-----GLLATTDTVVHMISIVVTVGYIAGGVGRTFGR 145

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
             +     I +      + + +            +    V    L     I   L   + 
Sbjct: 146 PWIYHL-QIALSFGITSIALILHG------TIYYIGLAFVAAGFLFALREITKNLQKIFV 198

Query: 397 SQGIFSDGE-----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH--GPI 449
                 D E     +   A+      +  +               ++ L    +   G  
Sbjct: 199 DALTARDREAALANQFDTALNNMPHGLCMFRPDGRLAVMNHRFGEMMSLPEDILQSGGTA 258

Query: 450 RNWLPY------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + +        I         + +++   +       +      D    W     +PM+
Sbjct: 259 ADIINACVLSGSISAASGRLILSEIENTKTHNIITSDPDIM---RDRSLSW---TFQPMA 312

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +        + +  DITE++ +   I   A  D LT +PNR SF D +  +L +      
Sbjct: 313 DG-----GAVVLLEDITERRHAEARISHLARYDELTTLPNRVSFRDEIERLLRIPPRQGE 367

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   ++ +D+D++K++ND LG   GD +L +++ R+ ++L+  D +AR  G+ F +   +
Sbjct: 368 LS-ALLFVDLDRFKQVNDTLGHPCGDQLLCAVSERLRDMLRPEDFVARFGGDEFVVFQRN 426

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++   A  A  +   ++    +    + + AS+G A  T+  I++  +LKNA++A+Y 
Sbjct: 427 IRSNDDAAVLARRIVDQLSERYKIDNHLVEIGASVGIAM-TAPGISADTLLKNADMALYR 485

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      FR    ++      ++ DL  A+ N E  L Y P++ L   +I   EAL
Sbjct: 486 AKAEGRGTFCFFRDELAQTVEARRILELDLRKALANEEFELFYQPLVNLKSGKISTCEAL 545

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G +S  + + +AE++ +I  +  ++L +   + + W D      + + +N +
Sbjct: 546 LRWNHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACLECMKWPDA-----VSVAVNFS 600

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +     ++   ++  +  +   P R+++  +ES ++ N + +  +L +L  +G+ ++LD
Sbjct: 601 PQQFHQRDVLSEVRYALEVSGLPPHRLEIEITESSLLRNTQLTHDVLSQLHMLGVRISLD 660

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYG 920
           DFGT  S LSYL   P + VK + S + G    R   +LR +  ++ ++  +++ + I  
Sbjct: 661 DFGTGYSSLSYLHNFPLEKVKIDRSFLEGIDTDRPLTLLRGVARLSADLGMSVVVEGIET 720

Query: 921 EIDIKELTRMG-CDYIQDSHVASPLGFNSILKLL 953
              ++ ++  G     Q    + P+    I +LL
Sbjct: 721 NEQLELVSADGTVTEAQGYLFSRPVPAIRIRQLL 754


>gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans]
          Length = 832

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 146/631 (23%), Positives = 278/631 (44%), Gaps = 23/631 (3%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQ 407
              I        +  + +        ++    + G    I+ +         +  +    
Sbjct: 206 HSTIFSRHRTRHKDGHWVWLETRGYNMLHDSAINGLVFSIEDITLRKDVELKLQEETAML 265

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNW--LPYIHINDRDNF 464
              +  +  +++  D       +        G +S   + G       L   + ND+ + 
Sbjct: 266 RAVLDLNPSMIYVKDSEGRFTISNQVFQRRFGYSSEDELRGKTVYDICLKMANENDKFSA 325

Query: 465 RTILDSFVGYRRGRLQYEFRVR--------AADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           R I D      +  +Q    ++         +D    W      P+ ++  +I+  +G+ 
Sbjct: 326 REIADEIQQQDQQVMQTGIPLQDVEAPGFWHSDMHL-WFHTSKYPLRDARNNIIGILGVT 384

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT++K +   I   A  D LT +PNR+  ++ L T ++ S    +   T++  D+D +
Sbjct: 385 RDITKRKMTELQIEYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQS-SLTMLFCDLDFF 443

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  L+ +++RI  +L   D +AR  GN F I+  S      I   A  
Sbjct: 444 KSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILTNSSLAESSIKAKA-- 501

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + ++++  +      + +  SIG A  +      +++++ A+ AMY AK RG N  E + 
Sbjct: 502 IARAVSERLVFENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAKERGRNRTEIYD 561

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +          +   L  A+E +EL + Y P + L+D  + G E L++W+ P++G IS 
Sbjct: 562 AALQSKSTKHARMDVALRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISP 621

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEG 813
           +EF+ IAE   M+  I ++ +E+  R + +W+        I + +N++ + LL       
Sbjct: 622 NEFIPIAETSGMVVPIGMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQ 681

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++  +   P  I+L  +E+  M NP ++   L  L+ +G+ L LDDFGT  S L+YL
Sbjct: 682 VREILDSSGVVPHTIELELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYL 741

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + + + G    +    I+R ++ +A+ +    +A+ +   + I EL  MG
Sbjct: 742 QKLPIDILKIDKTFVHGLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMG 801

Query: 932 CDYIQDSHVASPLGFNSILKLL--KERFPLV 960
           CD  Q    + PL       L+    +FPLV
Sbjct: 802 CDLGQGFIFSPPLSAEEAETLICSSHQFPLV 832



 Score = 79.6 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 23/276 (8%)

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325
           I F+  +     W   V  ++   +    ++   S        +I  + +          
Sbjct: 13  ISFIRYF-----WLRTVILLSEKFLLAEILIATCSIVVLAAQNTIPTLPM---PWLIAIA 64

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
            ++  M  +  A+L I A  LI         A      + +        +  + +L+  T
Sbjct: 65  GVFPLMLRHRIAMLCIAALALIGYRLNVYLGATA---SDWLPDLFATICIGWLSLLLAKT 121

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +  + +A         ++  R +     +  I    D         P +  ++G +   +
Sbjct: 122 LNINRIALSQA----RTNERRFNAIARVTRHIFIITDADYQIKFANPALQEVIGYSYEEI 177

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                   P +H +D +  +  L          +    R R  D  + W+  R   M   
Sbjct: 178 LHNAI--KPILHPDDEEEHKEKLRHLRNTPHSTIFSRHRTRHKDGHWVWLETRGYNML-H 234

Query: 506 NGDILRYIGIANDIT-----EQKKSLEGILCNAFQD 536
           +  I   +    DIT     E K   E  +  A  D
Sbjct: 235 DSAINGLVFSIEDITLRKDVELKLQEETAMLRAVLD 270


>gi|162146655|ref|YP_001601114.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785230|emb|CAP54776.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 730

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 134/583 (22%), Positives = 246/583 (42%), Gaps = 34/583 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-----------WDIVRDRVTTTPDIAT 436
           +   +     Q + +    Q+  + GS D +              D   + +      A 
Sbjct: 161 KRARSPVQLEQELENSRAAQAEILRGSRDRLLQVIDTVPALVSATDAEGNYIFVNRFHAR 220

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           ++G  +G       + L      DR          +       +YE  +         ++
Sbjct: 221 VMG--AGQGRNDAASQLR-----DR--------QVLETGLPTARYEESIADRYGMERILL 265

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               P  +    +   +  + DIT++KK+   +   A+ D LTG+P+R      +  +L 
Sbjct: 266 TSKIPFYDDASGMRYVLTTSLDITDRKKAERELHHLAYYDQLTGLPSRSKLETEMQVLLR 325

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
               D       +++D+D++K IND  G  +GD +L  +  R+   L    I+ARL G+ 
Sbjct: 326 QRGAD-GPPFAFVLMDLDRFKGINDTQGHTIGDLLLRKVALRLRTALPRAGIIARLGGDE 384

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  I+    ++   A  A  +    A P  L +R  +V AS G   + +   T   +LK 
Sbjct: 385 FA-IVHDVIDAADAAHMAERIVGIFARPFTLGDRVTSVGASAGVTLFPARGATFETLLKR 443

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LAMY AK+ G      F     ++      +++ L  AVEN E  L Y P I L    
Sbjct: 444 ADLAMYRAKNEGRCRYAFFDEEMEQAFAATTELEQALRRAVENEEFVLHYQPQIDLASGT 503

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G+EALI+W  P    +    F+ +AEE  +I  + ++ L    R    W+       I
Sbjct: 504 LCGVEALIRWVQPGGDLVHPGCFLPLAEETGLIAPMTVWSLREACRQAARWQSDGIH--I 561

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++      +++   +    ++    PS ++L  +E+ V+ NPE +   L  L+++
Sbjct: 562 RVAVNLSGVLFRQHDVHRLVVDATTEAGLDPSFLELELTETAVIENPESAGRQLAALQQM 621

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+S+ +DDFGT  + L YL  +P   +K +   +     +    AI+++II + KN+   
Sbjct: 622 GVSVAIDDFGTGYASLVYLTRLPIHRLKIDRVFIQDLGSSPGSRAIVKAIIALGKNLGIR 681

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +IA+ I  +  ++ L    C   Q  +   P+    +  L+  
Sbjct: 682 VIAEGIERQDQLRWLEEQDCQEAQGFYFGYPVPPAKLQDLVDS 724


>gi|295681510|ref|YP_003610084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295441405|gb|ADG20573.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 918

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/545 (22%), Positives = 243/545 (44%), Gaps = 22/545 (4%)

Query: 412 LGSGDIVWDWDI--VRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
              G+ V         D V    P    I G       G   +                +
Sbjct: 370 DAIGNGVIITRPGPSGDVVEYANPAFEKITGYERPQNAGGDHSAR----PET-PGLWQQI 424

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            + +  +R       + R A+    W  + +  + + +  +  +I + +D+TE  +S + 
Sbjct: 425 GTAIAGQREATTLT-KSRRANGTEFWYQLYVAQVRDESEKVTHHISVVSDLTELIESRDL 483

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           ++  A +D LT +PNR +  + +   +      D     ++ ID+D +K IND LG   G
Sbjct: 484 LVRQARRDALTDLPNRVTLRELIDAAIL-----DGHEFALLFIDLDHFKDINDSLGHGAG 538

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  + RR+   +    ++ R  G+ F  +L       +++     + +++  P+ + 
Sbjct: 539 DRLLQEVARRLSASVGSDGVVTRYGGDEFVTMLKCSTGDAELSALLARVTQTLDEPVQID 598

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706
           + ++ V  S+G + +         +LK+A+LAMY  K  G N VE F  S     + R+ 
Sbjct: 599 DMQLRVRMSVGVSCYPQDGTDCETLLKHADLAMYRVKAGGRNGVERFAPSLAHEAAQRIA 658

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +   L  AVE++   LVY P + +    + G+EALI+W    +G +S + F+ +AE++ +
Sbjct: 659 LSHKLRNAVEHNGFELVYQPQVDIRSYRLTGVEALIRWHDADFGTVSPTTFIPLAEDIGL 718

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I +I  ++L+        W +      + + +N++   L  ++    ++  ++ +  +  
Sbjct: 719 ISSIGEWVLQTACAQAKRWEEALPE--LRMSVNVSPSQLTSSDFGAVVRRALAASQLAAD 776

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +E  ++     +   L  L  IG+S+ +DDFG   S L+YL     D +K + S
Sbjct: 777 RLELEITEGGLV--APGALPTLSALHDIGVSIAIDDFGAGYSSLAYLRSFHADRLKIDMS 834

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G    R    I+ +II +A+N+   ++A+ +     +  L   GC+ +Q  + A+P 
Sbjct: 835 FIRGIGSSRADETIIGAIIALARNLRFEVVAEGVERAEQLAFLAEAGCEIVQGYYFAAPQ 894

Query: 945 GFNSI 949
              +I
Sbjct: 895 PAANI 899



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 17/249 (6%)

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
            ++   T      +A +   +       +  +   LA+  +          ++  + A L
Sbjct: 126 RRLRGETAGWAWLLADIAVRARVADGRASIDSPELLAANRMLANIVTQLVTLRDAQTASL 185

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
              +                  +    +          +         +  LA       
Sbjct: 186 RAASDSAT-----------RHLVIERTVLATTALAACFLFCYALIAHYRARLARQSARVI 234

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                 R           +  +D+     +      A+  G     +     +       
Sbjct: 235 ASESERRFRQYFDHHPLPMLIFDVETLSILAANRAAASQYGRTRHQL--CSLDMAALYAQ 292

Query: 459 NDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            D  +F   L + +            R R +D    ++ +       + G        A 
Sbjct: 293 ADLPSFLRDLHALLAAATTSGSAGVCRHRHSDGTPVYVELSYH--FLTYGHHRACFITAV 350

Query: 518 DITEQKKSL 526
           D+TE+K + 
Sbjct: 351 DVTERKNAE 359


>gi|90578882|ref|ZP_01234692.1| hypothetical protein VAS14_04233 [Vibrio angustum S14]
 gi|90439715|gb|EAS64896.1| hypothetical protein VAS14_04233 [Vibrio angustum S14]
          Length = 1022

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 126/554 (22%), Positives = 256/554 (46%), Gaps = 10/554 (1%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               +  S A   S + V   D              +       + G   +     +I+D+
Sbjct: 462  KKLQALSRAAEQSAESVIITDKNGFIQYVNTAYIKMSNKPLNQLIGSHSSICINDYIDDK 521

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +    ++   V  +  R       +  DN   ++   I P+   +G+I  YI  + DIT+
Sbjct: 522  NEQDELISKLVSGQSIRHVIT---KEKDNNIIYIDYTISPIRGDDGNISNYIATSKDITD 578

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +      +   A  D LT +PNR  F   +   +  +      +  +++ID++  K++++
Sbjct: 579  RVSYENRLHRLAHYDALTQLPNRTMFTQDIAHSMKEAIRH-KAQIAIVLIDLELTKQLHE 637

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             +     + +L+ +++RI   L+  D+LAR+  + FGI++ S ++   I   A  + ++ 
Sbjct: 638  SMSNEDIEKILLIVSKRIKSNLRETDVLARIGSDEFGILIRSFHDLQTITQVAERLLQNT 697

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              P+++  + ++++ +IG A  + ++     + K A +A+Y AK   G++   F  S   
Sbjct: 698  NAPLSIDSQVLSISTNIGIALSSDAESDPKLIQKYAHIALYRAKGLSGSNYCYFTESMEA 757

Query: 702  SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +   +  + DL  +V + +    Y P +      + G+EAL++W + K    S  + + 
Sbjct: 758  ENIQRLILESDLRKSVGSDQYEYFYQPKVNANTHTLCGVEALLRWKNNKGEYRSPIDVIP 817

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            I E   +I     +++ +    + SW+D+ +     + INI+++ LL+ +L E +   I+
Sbjct: 818  ILESSELIIDAGRYLINQACLQLKSWQDKGHFFD--VAINISARQLLEADLVETITQAIN 875

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
             T  +P  ++L  +ESV+M +   +   L  LR++GI + +DDFGT  S L+YL   P +
Sbjct: 876  NTGCNPHFLELELTESVLMCDVNFALKQLKSLRELGIKIAIDDFGTGYSSLAYLSRFPIN 935

Query: 880  TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             +K +   +      +  I I RSII +A N+  TI+A+ +  E  +K L  +G + +Q 
Sbjct: 936  ILKVDREFIKDLPSNKDSITICRSIIELAHNLNLTIVAEGVETEDQLKFLESLGVEELQG 995

Query: 938  SHVASPLGFNSILK 951
             +   PL  +    
Sbjct: 996  YYFDKPLPLSDFEN 1009


>gi|227822860|ref|YP_002826832.1| GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227341861|gb|ACP26079.1| GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 788

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 138/587 (23%), Positives = 264/587 (44%), Gaps = 19/587 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +   F  +Q  L      + + S   R +     +  +++  D        +       
Sbjct: 203 ALAGNFNAMQDRLERE--ERELKSAHARATETYNLTPAMLFSRDAAGRLSAVSDYWLLAT 260

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     + G  R++  +I  +  + +     +         +     R AD +F  ++  
Sbjct: 261 GYLRDEVIG--RSFTDFIDPSWHEAYHQSAKATAVDGDDITELTLPFRKADGEFMTVL-- 316

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I     S+G+I   + +  D+T  K++       A  D+LTG+ NRQ F + L   +  +
Sbjct: 317 ILETETSSGEIS--LSVMTDVTALKQAESRNHTQAITDHLTGLLNRQGFENALDEAILSA 374

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                ++   + ID+D++K IND  G A GD VL     RI   L+  D++ARL G+ F 
Sbjct: 375 DQC-GMQLACLFIDLDRFKWINDNFGHAAGDAVLRQTVERIRAALRPEDVIARLGGDEFA 433

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I++ + + ++  ++   ++  ++  P+ +   E+ V+AS+G + + +    +S++L  A+
Sbjct: 434 ILIAATDVAVLASEIGESICAALHEPMPITGNELFVSASVGVSVYPAHASGASDLLLKAD 493

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY  K  G N ++ F   +     +R  I++ +   ++         PI+ L D +IV
Sbjct: 494 MAMYARKRDGKNGLQVFDAGMLDAARERHEIEQCIEAGLKEDWFEAWLQPIVSLDDGQIV 553

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++ DHP+ G +   + + IAEE   I  I   +LE+  R + +          ++
Sbjct: 554 GFEALMRLDHPEKGLMPPGKIIGIAEETGTIGRIGDRVLEKAIRHLAAISALDGTQSTYL 613

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N +        L   + AL+ K   SP RI +  +E+V+M +      +L +L + G 
Sbjct: 614 AVNFSPLQFE-LTLPHKLAALLLKHHISPQRIVVEITEAVLMLDNPEVHAVLKQLNEFGC 672

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-------KRIAILRSIIPMAKNI 909
            + LDDFGT  S LSYL   P D VK + S     +        K   +++ I  ++  +
Sbjct: 673 RIALDDFGTGYSSLSYLNRFPVDIVKVDQSFTRSLSSGAADVRRKSRMLIKGIRTISHQM 732

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             T++A+ I  +   + L ++G D  Q    + P+  + +L +L+  
Sbjct: 733 GCTVVAEGIETDEQWQLLRKLGVDNGQGYLFSRPMPIDGMLTMLENE 779


>gi|257487818|ref|ZP_05641859.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331008533|gb|EGH88589.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 703

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 254 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 432 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 671 LGYPLPAEQFLDEIRA 686


>gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 635

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 226/443 (51%), Gaps = 12/443 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +AF D LTG+ NR+ F++ L   +  ++ + +    V+ ID+D +K +ND LG 
Sbjct: 187 EAQLKHDAFHDKLTGLINRELFVNLLKQEMKTASVNSDYLYGVLFIDLDGFKMVNDSLGH 246

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GDD+L  +++R+   ++  D +AR  G+ F I+L +          A  + K+++ P 
Sbjct: 247 LIGDDLLKVVSQRLKTCVRSSDAVARFGGDEFAILLKNLKELSLAEVIAQRILKTLSQPF 306

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            L   E+ + ASIG          ++E+L++A++AMY AK +G  H + F          
Sbjct: 307 YLNNNEVAIGASIGMTFNIFKYNQATEILRDADIAMYQAKRQGKGHYQCFNPDMQALVFA 366

Query: 704 RVMIKEDLCLAVEN-------SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           R+ ++ +L  AVEN        +  L Y PI+ L   +I G EAL++W HP  G IS  +
Sbjct: 367 RLQLERELKKAVENIKNNEFSQQFSLYYQPIVHLKTRKINGFEALLRWQHPTEGWISPQK 426

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQ 815
           F+ IAEE  +I  +  ++L+++ + +  W  Q      + + IN+++     +   E + 
Sbjct: 427 FIPIAEETQLINPLGWWILKQVCQQMSYWTKQFPNHDSLRVNINVSAIQFKQDNFVEQIG 486

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +I ++   P  +KL  +ES  +     S   L +L+ +GI L +DDFG   S L+ L  
Sbjct: 487 LIIQESHLPPESLKLEITESYTLNTENYSLEKLQKLKDMGIHLCIDDFGVGYSCLNRLQE 546

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P +T+K + S +    +    +  +++I+ +A ++E  ++A+ I  +  ++ L  +GC 
Sbjct: 547 LPVNTLKIDRSFLQKLNQCNPNLQFVKAILMLASSLEIEVVAEGIETKTQLQYLQELGCL 606

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q    + P+  N   + L+E 
Sbjct: 607 LGQGYLFSKPIDSNQATQFLREE 629


>gi|327440116|dbj|BAK16481.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 835

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 124/578 (21%), Positives = 253/578 (43%), Gaps = 14/578 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLAS 442
           F +I+         + +    E            +W  + I    +  +  + +IL +  
Sbjct: 258 FGIIKDETYQTLLKKKLMEQNEGYKSIFDNLTSGIWMREKIGGKFLFASKGLESILEIPL 317

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +++   + W   I               +  +    Q+ +R+ +      W++  + P 
Sbjct: 318 STLYEDSKAWYNMIQPVHLPELANGKKKMINGQ--SFQWIYRINSGSGTTKWLLEEVVPR 375

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + +G I    G+  DIT + +    I   +  DNLTG+PN+QS   ++  + +      
Sbjct: 376 LDDHGQITNIFGLVTDITYEIEKEHTINYLSNYDNLTGLPNQQSLFKKIDLMCE-----S 430

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    ++  D+D++  IND LG  +GD+ L    +R+ +++     LARLS N F +I+ 
Sbjct: 431 DDPYAILYFDLDRFNIINDSLGYFIGDETLKFTAQRLEKIMPKESYLARLSSNDFIMIIK 490

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           + N   ++  +A  + K I  P  + + E+ ++ SIG   +         +LKNA  A+Y
Sbjct: 491 NYNTKKEVLQYAKKVIKKIREPFTIQDYELNISTSIGITFYPEEGREKLTLLKNAHTALY 550

Query: 683 HAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N  +            +  +  D+  A+ N E  L + P +   +  + G EA
Sbjct: 551 KAKKDGKNTYKLSSDDEDLSSYKKYALDRDMRKAISNEEFELHFQPQVETGNGSLCGAEA 610

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W+H +WG +S  EF+ +AEE  MI  I  +++E++ + +  W+++   P I I IN+
Sbjct: 611 LIRWNHKEWGLVSPGEFIPMAEENHMINGITDWVIEKVCQLLKEWKEKGL-PIIPIAINV 669

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
                +   L + ++  +      P  ++   +E  ++         +  L+ +GI + +
Sbjct: 670 PPIRFMKKGLFQHVKTQLENYGIDPFYLEFEITEDTLLNIESSVYSTIQSLKDLGIRIAV 729

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKD 917
           DDFGT  + L+ +     + +K +   +     +      I+ + + +AK++E  ++A+ 
Sbjct: 730 DDFGTGYASLASIRKFKPNKIKIDKIFIDNINNEDKVDNGIICATLNLAKSLEMNVVAEG 789

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +     +K L +  CD IQ    + P+       ++K 
Sbjct: 790 VEEFEQLKFLKKNDCDVIQGYLFSKPVKKEMFEHIMKA 827



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 9/151 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +       + A   +    W++    D++  + +   +LGL     +  I     
Sbjct: 142 ELKQELMLWENHLNYAQQIAEIGSWEYVFNEDKLICSKNFYNMLGLD-YQKYISINKPFK 200

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYI 513
            IH  D D     L   + Y      ++ RV      +   + +         G   +  
Sbjct: 201 QIHPEDLDISLQYLKKAI-YDGENYTHKVRVYHRKTKELKHLKVHAEVFF-EEGKPAKIF 258

Query: 514 GIANDITEQ----KKSLEGIL-CNAFQDNLT 539
           GI  D T Q    KK +E      +  DNLT
Sbjct: 259 GIIKDETYQTLLKKKLMEQNEGYKSIFDNLT 289


>gi|227820985|ref|YP_002824955.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain precursor [Sinorhizobium fredii NGR234]
 gi|227339984|gb|ACP24202.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain precursor [Sinorhizobium fredii NGR234]
          Length = 928

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 136/554 (24%), Positives = 257/554 (46%), Gaps = 29/554 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-------HIN 459
             +A+      +  +D     + +      I  L   S+ G    +   +       + +
Sbjct: 379 LDIALENMTQGICLFDHADRLLISNRRCLEIFEL-PESLAGFGLTFREVLDRMCARTYPD 437

Query: 460 ---DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                               G+   +F  + ++ +   +  R  P    +G    ++   
Sbjct: 438 PAVAEAKSEAAYRKHRLEIAGKGGGDFVEKLSNGRSILVKHRTLP----DG---GWVSTY 490

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE+  S E I   A  D+LTG+PNR  F   L   LD +A   + +  V+ ID+DK+
Sbjct: 491 EDITERLDSEEQISFLARHDSLTGLPNRLQFNSHLDEELD-AAVWFSRKVAVIGIDLDKF 549

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND+ G A GD VLV++ +R+ E L+  + +AR  G+ F  +   E +  ++ DF   
Sbjct: 550 KEVNDLHGHAAGDFVLVTIAQRMKEHLQEGEFVARFGGDEFAAVKRFE-DLSEVHDFLRR 608

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +   +   + E+    S+G A +     T+  ++ NA+LAMY AK      +  + 
Sbjct: 609 IETCLQEEMRFGDFELKSGGSMGVAIYPQDAETADTLINNADLAMYRAKAALNQTICFYE 668

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  +  DL  AVE SEL L Y     +   +++G E L++W+HP+ G +  
Sbjct: 669 VSMDEAARGRRALANDLWEAVERSELALHYQVQKSVTTGDVIGYEVLLRWNHPERGLVPP 728

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ +AEE   I  I  ++L +  R+  SW  +       I +N++   L + ++   +
Sbjct: 729 NEFIPLAEECGAILPIGEWVLRQACREAASWDAEY-----KIAVNLSPVQLANGDVVSLV 783

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++ +T     R++L  +ES ++ + ER+ L L  ++ +G+++ +DDFGT  S L  L 
Sbjct: 784 HSILVETGLDAKRLELEITESTIIDDKERALLTLRAIKALGVTIAIDDFGTGYSSLETLR 843

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M+    + +  AI+R+I+ +  +++  ++A+ +  +  +  L   GC
Sbjct: 844 AFPFDKIKLDKSFMSEVEGSPQAKAIIRAILALGHSLQVPVLAEGVETQKQLDILQAEGC 903

Query: 933 DYIQDSHVASPLGF 946
           D  Q   +  P   
Sbjct: 904 DEAQGYLLGRPAPI 917



 Score = 78.1 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 90/327 (27%), Gaps = 26/327 (7%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
            W+    I+  FG  +                   +L++  ++   +        A    
Sbjct: 48  IWLGAAGIASGFGIWATHFIAMLAYDPGVVLGYHTSLTTLSLVVAILLTTTALAIATYAK 107

Query: 285 ITFSGIACIAIL---------FCMSFYYPMVTASIARITLASIVLYYTYF--IIYHGMKG 333
              + +    +L           M+           R  + + VL    F  +    +K 
Sbjct: 108 GRPAWLLGGLVLGAGVGCMHFLGMAALELPGFIRWDRTLVVASVLAGVLFEMVAIFAIKR 167

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKR----------LDNDIIQPALVGGLVL--IVIL 381
            +    L     +     + L                 +   +IQP  +  ++      L
Sbjct: 168 DQSKAQLAATAAMTL-GIVVLHFTAMGAVTMEVEFATGIQEGMIQPHFLAFVLAGTAFFL 226

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +I    A       + S+ E            ++  D+     +         G  
Sbjct: 227 LSAVLIAAGFARHAEILAVASEKEFSRFVGSVKDYAIYMLDVDGRVASWNAGAEANKGYT 286

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  + G   N+  +    D+          +    G+ + E      D    W  + I  
Sbjct: 287 AEEIVGK--NFACFYSPEDQAANLPARALRIALEAGQYETEGWRYRKDGTRFWAHVVIDT 344

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEG 528
           +   +G    +I IA DIT++K+  + 
Sbjct: 345 IVGEDGGHAGFIKIAKDITKRKEDADR 371


>gi|325272685|ref|ZP_08139039.1| hypothetical protein G1E_07058 [Pseudomonas sp. TJI-51]
 gi|324102196|gb|EGB99688.1| hypothetical protein G1E_07058 [Pseudomonas sp. TJI-51]
          Length = 681

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 113/436 (25%), Positives = 220/436 (50%), Gaps = 7/436 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   ++  A  DNLT +PNR    DRL   +  +         V+ +D+D +K +ND  G
Sbjct: 243 ANSELVQLALHDNLTRLPNRILLNDRLQQAIHKAIR-QKSHFAVLFMDLDGFKAVNDTYG 301

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L+ + +RI +  +  D +ARL G+ F +++         A  A  + ++I +P
Sbjct: 302 HHTGDQLLLQVAKRINDAKRGEDTVARLGGDEFVLLIDP-GEPEDAAMLAQRLVENIRLP 360

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  + + V+ASIG A +  + +T  E++ NA+ AMYHAK +G +    F  +   +  
Sbjct: 361 YVLGRQTVHVSASIGIAIFPENGLTEHELMVNADAAMYHAKEQGRDGYCFFEKAMNVNAH 420

Query: 705 VMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + ++  +DL  A++ +E  L + P +   +  ++G+EAL++W+ P +G +    F+ +AE
Sbjct: 421 LQLEMQQDLRCALDRNEFILHFQPKMLAPNGPMIGVEALLRWNKPGFGLVPPVRFLPLAE 480

Query: 763 ELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKT 821
              +I  I  +++    R +  W+          I +NI++  L   +L + ++  +  +
Sbjct: 481 RTGLIVPIGSWVIHEACRQMAEWQALGEGKDEWSIAVNISTVQLAHAKLVDVVRNALQSS 540

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +ES  M + E + + L +L  +G+++++DDFGT  S L YL  +P + +
Sbjct: 541 GLPPRFLTLEVTESTAMRDAEAALIALDQLAALGVNISIDDFGTGYSSLLYLKRLPANEL 600

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +T   +     AI+ +I+ + K +   I+A+ +      + LT +GCD +Q   
Sbjct: 601 KIDRGFITELAKCNDDAAIVSAIVALGKTLGLRIVAEGVETAEQQQMLTELGCDILQGYL 660

Query: 940 VASPLGFNSILKLLKE 955
           +  P+    +L+ L  
Sbjct: 661 LGKPMSAERMLESLSA 676


>gi|326318167|ref|YP_004235839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375003|gb|ADX47272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 886

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 133/584 (22%), Positives = 248/584 (42%), Gaps = 26/584 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           G   + ++         +         A+          D     +        I     
Sbjct: 301 GGFAMAYLRRISRARNDLARSKSTLEQALGSMVSGFVLLDSGHRVLQWNQRYEEIFPWLR 360

Query: 443 GSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRA----ADNQFHWM 495
             M   +  +   +    R    +    +      +R  LQ E R        +  F  +
Sbjct: 361 AMMEVGLP-FRSVLEATSRYYLPDADEAMRREWVEQRLLLQRETRGTHEQMLPNGHFIQI 419

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             R  P           +   +D+T+ +++   I   AF D LTG+PNR+  LDRL   L
Sbjct: 420 TERATPE-------GGLMITYHDVTDMRRASAEIENLAFYDPLTGLPNRRLLLDRLHQAL 472

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +         ++ +D+D++K +ND  G  +GD +L  +  R+    +  D +ARL G+
Sbjct: 473 ATAQRSHQF-GALLFLDLDQFKTLNDTQGHEMGDLLLQQVALRLRVCARPADTVARLGGD 531

Query: 616 RFGIILISE-NNSLKIADFAIAM----RKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            F +++    ++  + A  A  +      ++A P +L ++    T S+G A +   + T+
Sbjct: 532 EFVVMMSDLSHDRQEAATIARRIGEKILHAVAQPYHLQQQMHQNTCSVGAAIFGDQRQTA 591

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728
           +++LK A++AMY  K + GN +  F             ++ DL  A+   E  L Y P  
Sbjct: 592 ADLLKQADIAMYQVKAQRGNALCFFDPQMQVVISQRARLESDLQAAIAAQEFVLYYQPQF 651

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                E++G E L++W HP+ G I+  EF+ +AEE  +I  I  ++L      + +W   
Sbjct: 652 S-RAGEVIGAEGLLRWKHPERGLIAPGEFIAVAEESELIVPIGQWVLRTACAQLAAWSGD 710

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
             +  + I +N++++     +    +   +      P  ++L  +ES+V+ N + S   +
Sbjct: 711 PRLAGLHIAVNVSARQFRHPDFVTSVVEALQHAGVKPHLLELELTESLVLDNVDDSVAKM 770

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMA 906
             LR  G+  ++DDFGT  S L+YL  +P   +K + S +    ++     I+++II MA
Sbjct: 771 HLLRTKGVRFSVDDFGTGYSSLAYLTRLPLHQLKIDQSFVRNLGKRPTDDVIVQTIIGMA 830

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +N++  +IA+ +  +     L R GCD  Q    A P+     L
Sbjct: 831 RNLDLEVIAEGVETQEQRDFLDRHGCDLYQGYLFARPMPAQDFL 874


>gi|113972075|ref|YP_735868.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113886759|gb|ABI40811.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 706

 Score =  466 bits (1199), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/557 (21%), Positives = 232/557 (41%), Gaps = 12/557 (2%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRD 462
           E  +  +  S + V+  D     +     +  I G ++  + G    +L    +      
Sbjct: 154 EIMATTLEESAEAVYITDADNRILAVNKAMCRICGYSAEQLIGKTPEFLEAKLLPPGQET 213

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           + +  +       RG    E   + +D          R +   +  +   + I +DI+ +
Sbjct: 214 DCQAAMK-----LRGFWHGETLKQRSDGSHFPAWQSSRRIETDDNALYH-VNIFSDISTK 267

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     +   A  D LTG+PNR      L + LD    D +    +M +D++ +K IND 
Sbjct: 268 KLLETQLTTRAMYDTLTGLPNRYHLKQILNSALDKLKDDPSALGALMFLDLNGFKNINDS 327

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +     
Sbjct: 328 FGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQECSCKEEIQLFAEQILSLFD 387

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFR 701
            P  +  ++  +  SIG A + +    + +++  A+ AMY AK    +       +S   
Sbjct: 388 SPFEIEGQKFFLGTSIGIALFPTHSDQAGQLISLADTAMYSAKKNQPHLVFYDKVMSQAA 447

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  +L  A    +  L Y  I+ L   + +G EAL++W      +  ++EF+ + 
Sbjct: 448 ELKLKLINNLRHAHSLKQFNLAYQAIVDLHTNKPIGAEALLRWQKSPNEHYEAAEFVPLL 507

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  + LE+  +    WR     P   + +N++   L   +    + + +   
Sbjct: 508 EETGLIITIGQWALEQACKQAAIWRASY-QPDFKVSVNVSPLQLEHVDFVGQVISALEMV 566

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +ES ++  PE +R  L R++ +G+ + +DDFGT  S LS LG +P D+V
Sbjct: 567 ALPAEALILEITESALLRQPELARQTLERIKALGVGIAIDDFGTGLSSLSRLGTLPIDSV 626

Query: 882 KFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +    +         +  +I+ +A+ ++   +A+ I  +     +T MG  + Q    
Sbjct: 627 KIDAEFALRLHDASGQKLCHAIVQLAQALDIHFVAEGIETQQQKDIITHMGQGFAQGFLF 686

Query: 941 ASPLGFNSILK-LLKER 956
             P       +  L ER
Sbjct: 687 GYPSSVEQFTQAFLAER 703


>gi|194365691|ref|YP_002028301.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Stenotrophomonas maltophilia R551-3]
 gi|194348495|gb|ACF51618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stenotrophomonas maltophilia R551-3]
          Length = 919

 Score =  466 bits (1199), Expect = e-128,   Method: Composition-based stats.
 Identities = 132/548 (24%), Positives = 238/548 (43%), Gaps = 10/548 (1%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           + ++    +  T +   I GL    +   +   L     + R  F   L   +       
Sbjct: 368 EIEVQTRHMQWTEECYRIHGLRKEPI--SLDQALALYTEDSRSAFEAALVR-IAGGGLPE 424

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q +           W+ + I      +G   R++ +  DIT ++++ E I   A  D LT
Sbjct: 425 QLDLCFYRQSGLRVWVQVLIELDR-RDGLPPRFVVLFRDITREREANERIELLAHYDLLT 483

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    ++    ++ +  D      ++ ID+D +K IND  G A GD +L +   R+
Sbjct: 484 GLPNRVLLGEQTAEAIEEA-RDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRL 542

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            + L+  D+  R SG+ F ++L            A  +  S+A P+   +  + V AS+G
Sbjct: 543 HQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGDTTLKVGASVG 602

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717
            A    ++     +L+ A+ AMY AK  G N  + +   +      R+ ++  L  A+E 
Sbjct: 603 IAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRRLELEHALHGAIER 662

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L Y P++     E   +EAL++W  P  G  S +EF+ IAE+   I  I  ++L  
Sbjct: 663 EEFSLAYQPLLHAHHGEPPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNE 722

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R  I+W          I +N+++  L D    E +  +     + P R++L  +ES +
Sbjct: 723 ACRQAIAWDRAGLCFD-RIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESAL 781

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895
           + + +  R     L + G+ L +DDFGT  S L+YL   P   +K + S + G       
Sbjct: 782 IRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGT 841

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + ++I+ +   +   ++A+ +    +   L R GCD IQ    + PL    + + L++
Sbjct: 842 AEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQ 901

Query: 956 RFPLVKNT 963
           +      T
Sbjct: 902 QHAAPGRT 909



 Score = 98.5 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  LA+  +G  +WDWDI  DRV  TP +                  L  +H  D    R
Sbjct: 107 RWELALDSAGHSLWDWDIPSDRVVRTPALGD----------ETATEILARVHSEDIGQVR 156

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             LD  +     +   +FR R AD Q+ W++ R R +   ++G  LR +G   DI +QK+
Sbjct: 157 VALDQHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQ 216

Query: 525 SLEGILCNAFQ 535
               +      
Sbjct: 217 LEGLLQEQQLH 227



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 9/155 (5%)

Query: 398 QGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +G+  + +   S A   +    W +D        +P++ ++L L  GS+ G  R WL  +
Sbjct: 218 EGLLQEQQLHLSEAQRIASMGSWSFDPDSGLFWWSPELRSLLSLEQGSVPGQ-RRWLKQL 276

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H   R   R          R     E  +   +     + + ++P+ +++G   R +G  
Sbjct: 277 HPRSRGALRAAWRRVWRDGRAA-NIELELTRGNEPSQHLRLWMQPLLDTDGQPKRLLGQV 335

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            +ITEQ ++   I         T + NR S L R+
Sbjct: 336 QNITEQHQTDALIRWR------TELLNRVSALGRI 364


>gi|152968250|ref|YP_001364034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
 gi|151362767|gb|ABS05770.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
          Length = 708

 Score =  466 bits (1199), Expect = e-128,   Method: Composition-based stats.
 Identities = 147/579 (25%), Positives = 252/579 (43%), Gaps = 10/579 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V  +     Q V           +  +R    V  S DI    D  R     +P      
Sbjct: 133 VGGLLVVTWQDVTDLRRAEAARVAGEQRFRALVEHSSDITVVVDRERVVTYASPSTQRFT 192

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQFHWMII 497
               G++ G        +H  DR+  + +LD       G++  E  RV AAD +  W+  
Sbjct: 193 ADGDGTLAGTPYGLP--LHPADRELAQELLDRAYAAPPGQVLRERARVIAADGRTRWIEA 250

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                 ++ G +   +    DITE++ + E +   A +D LTG+PNR+ F   L   L  
Sbjct: 251 EATNHLDTPG-VGGVVINCRDITEEQHAREALAAEAVRDPLTGLPNRRYFTQALQHALAR 309

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           SA        ++++D+D +K +ND  G   GD +L +L +R+   L+  D + RL G+ F
Sbjct: 310 SARSGQP-VALLLLDVDHFKHVNDAHGHPAGDRLLTTLAQRLRSSLRPSDTVCRLGGDEF 368

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++    ++  +    A  +  +      L   E+ V+ SIG ++          +L  A
Sbjct: 369 VVLAEDLHHLDEALLLAERVNVAAGGTYLLDHGEVRVSVSIGVSTAVGPG-DPDALLSTA 427

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + A+Y AK RG +  E F+         R+ ++ DL  A    EL L + PI+R  D  +
Sbjct: 428 DHALYEAKRRGRDRAEVFQPQLREHLLHRLALQRDLRRATTRDELELYWQPILRASDHAV 487

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EAL++W HP+ G ++ + F+  AE+  ++  I  ++L   A     W  +    P  
Sbjct: 488 TGAEALLRWHHPEHGLLTPAAFIPAAEDAGLMPVICEWVLHHAAEQSARWARELADRP-Q 546

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+    L D +L   + A+        + + L  SE ++  +  R + LL  LR  G
Sbjct: 547 VFVNLDRHQLHDPDLLSRVGAIADAHHADLTGLTLEVSERILTEDLPRIQPLLHLLRAGG 606

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTII 914
           +SL LDDFG   + L++L  +P D +K + S           AI+ +++ +A  +    +
Sbjct: 607 LSLALDDFGAGNTALTWLQRMPMDVLKLDRSFTAALGDPASEAIVDAVLHLAPRLGIATL 666

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +     +  L  +GCDY Q  H A P     +   L
Sbjct: 667 AEGVETAAQLATLVDLGCDYTQGFHHARPQPARELTAAL 705


>gi|237746617|ref|ZP_04577097.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
 gi|229377968|gb|EEO28059.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacter formigenes HOxBLS]
          Length = 905

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 254/549 (46%), Gaps = 12/549 (2%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             + D ++  D  R         + + GL    + G    +L    I D   +  + D  
Sbjct: 363 ENNRDGIFIADQDRRITVVNRQFSRMTGLTQEKIMGNKPWYLQA-DIADSTCYSQLCDVI 421

Query: 472 VGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                  +  +E   +    +     + ++ + + +  I+ YIG   DI++ +   +   
Sbjct: 422 ACTDHEEMAAFE---KNRQEKIEPTHLTVKIVRDMDDRIISYIGTLLDISQNEFLEDHTR 478

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D LTG+PNR   LDRL   L  +  +      VM +D+D++K IND LG A+GD 
Sbjct: 479 YMIEHDFLTGLPNRILLLDRLGQTLIAAERNRRRAA-VMFLDLDRFKHINDTLGHAMGDR 537

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R+ + ++  D ++R  G+ F I+L    N+  +A  A  +  +++    +   
Sbjct: 538 LLQQVAFRLTKCVRKNDTVSRQGGDEFVILLNDIGNADDVALVANNIMHALSQNYQIENY 597

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIK 708
           E+++T SIG A +         +LKNA+ AMYHAK  G N  + F         +R  ++
Sbjct: 598 EMSITPSIGIALYPEDGKDIDTLLKNADTAMYHAKEGGRNAYQFFNAQMNLHLVERTRLE 657

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A++NS  +L Y PI+      + G+EA ++W+HP++G +    F+ +AE+  +I 
Sbjct: 658 NDLKAALQNSGFFLEYQPIVDTQSGHMTGVEAFLRWNHPEFGILMPPRFLGVAEDTGLIG 717

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  +++    +    WRDQ    P  + IN++S  L    L   ++  + +   +P  +
Sbjct: 718 PIGEWVIRTACKQAGEWRDQGF--PKTVSINLSSIQLKQKNLLSTIRNALKENGLAPDFL 775

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E  +M N +    LL  LR +GI + LD+FG  CS +S+L   P   +K +   +
Sbjct: 776 ELQITEGSIMENVKTVSDLLHELRAMGIRIVLDNFGNGCSSISHLKKAPIGKIKIDPVFI 835

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G+  +   +  +I+ MAKN+   + A  +  ++    L  +GCD  Q   V+  L  
Sbjct: 836 HALGTGSEDADVAGAIVAMAKNLRLKVSAGGVETDLQALRLKEIGCDEYQGYLVSPSLSA 895

Query: 947 NSILKLLKE 955
             I   L+ 
Sbjct: 896 GEISPFLEA 904



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 403 DGER--QSLAVLGSGDIVWDWDIVRD------RVTTTPDIATILGLASGSMHGPIRNWLP 454
           + ER    LA+  S   +W   + RD      R   +     + G        P   ++ 
Sbjct: 223 EKERHFYQLAIERSDIGLWKATVARDTPMDALRFHFSDKSGDLFGF-VTFADIPFSGFMN 281

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH    +  RT L+S +  + G    E RV   +  F W+  +   +   +   +R  G
Sbjct: 282 TIHPESAEKIRTALNSAINGKTG-FDIEIRVNKPNGDFAWINWKCCLIEEDDTGKIRLEG 340

Query: 515 IANDITEQK 523
           IA DIT  K
Sbjct: 341 IAADITSYK 349


>gi|319778115|ref|YP_004134545.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171834|gb|ADV15371.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 878

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 140/622 (22%), Positives = 260/622 (41%), Gaps = 44/622 (7%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS-QGIFSDGERQSLAVLGSGDIVWD 420
           + N+      +      ++++   V   +      +   +     R  LA+  SG  VW+
Sbjct: 268 IPNNAWMLRGLIAFAGALVVLPILVAGRLFGERQKNYAELRRLSGRLELALEASGIGVWE 327

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D+    +     +  I G  +        +W   IH  D D  R   D+    R G   
Sbjct: 328 HDLATKELLWDDRVNQIYGKPADGKPRGYEDWAMAIHPEDFDRARQEFDAAAE-REGPYS 386

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------------------- 520
            ++RV  AD     +  R     +  G   + IG   D+T                    
Sbjct: 387 SQYRVLLADGTTRHVRTRAAFFQDIGGTP-KMIGAEWDVTSDVLLNETLIRERQLSESKN 445

Query: 521 -EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            E K +   +   A  D LTG+PNR+   + L        +    R  ++ +D+D++K+I
Sbjct: 446 AELKVAKAHVEHVALHDPLTGLPNRRYLDELLAE-----KSVTGTRTALLHLDLDRFKQI 500

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A GD +LV  ++ I       D +AR+ G+ F ++    ++   ++     +  
Sbjct: 501 NDTLGHAAGDAMLVHASKVIKVNTGPGDFVARIGGDEFVVVSHGRDDKQ-LSALGDRIIT 559

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P++          SIG A+       + ++L NA+LA+Y AK  G N  E F    
Sbjct: 560 QMRRPVDFQGNPCRFGVSIGIAA----GTDAKQLLVNADLALYRAKGSGRNRHEFFDEEL 615

Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I +++   +E +E    Y P       EIVG+EAL +W HP+ G ++   +
Sbjct: 616 QSEIVRTKQIADEILGGLERAEFTTYYQPQFDARTLEIVGVEALSRWKHPERGILAPQSY 675

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEEL ++  I+  +LE+   +   W +     P  + +N+++K L D +L +G++ L
Sbjct: 676 LKVAEELNVVAVIDRAVLEQALENFDQWSNSGLKIP-HVSVNVSAKRLEDKDLIDGLRKL 734

Query: 818 ISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                     +     ES+ +  N +     L  ++++GI + +DDFGT  + +  L  +
Sbjct: 735 A----IRKGTVSFELVESIFLDENDDLVTWNLEHIKELGIDIEIDDFGTGHASIVSLLKL 790

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K +  L+T  T+   +  ++ SII + K++   +IA+ +      + L  +GCD 
Sbjct: 791 QPRRLKIDRQLITPVTQSIPQRQLVSSIIEIGKSLGIEVIAEGVETNDHARILKELGCDI 850

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q      P+   +     + R
Sbjct: 851 LQGYVFGRPMDAKAFTAFAQSR 872


>gi|320322820|gb|EFW78913.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 969

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 236/445 (53%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + ++  A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  + +
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHHVYSESLIKALANHVVE 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATI 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G +S +EF
Sbjct: 700 NESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPAEF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  +++  +   I SW ++ N+  + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     +  L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    + P+       ++K    L 
Sbjct: 939 QGYLFSKPVIIEECASMIKSSRSLS 963



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    ++   S      L              A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492
                 +   +          + I++     +                 E R+     + 
Sbjct: 275 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 326

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    I P+ +  G + +YI I  DIT +K+    IL N+ + NL  +  +Q+  +   
Sbjct: 327 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 386

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +      +  ++V+D
Sbjct: 387 SALGELAALTAAQGLTLSKAALLVVD 412


>gi|118497063|ref|YP_898113.1| signal transduction protein [Francisella tularensis subsp. novicida
           U112]
 gi|194324298|ref|ZP_03058072.1| EAL domain protein [Francisella tularensis subsp. novicida FTE]
 gi|118422969|gb|ABK89359.1| signal transduction protein with a PAS, a PAC, an EAL and a GGDEF
           domain [Francisella novicida U112]
 gi|194321745|gb|EDX19229.1| EAL domain protein [Francisella tularensis subsp. novicida FTE]
          Length = 772

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 134/564 (23%), Positives = 249/564 (44%), Gaps = 13/564 (2%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YI 456
           + I  D E     V  S D V   D   + +        + G       G     L    
Sbjct: 214 EKIDKDKEIADYIVNNSDDSVMVTDQYLNIIYVNKAFEAVTGYTKTEALGNTPAMLSSRK 273

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D+  +  +         G  + E   R    + +    +I  +   N  ++ Y+ + 
Sbjct: 274 H--DKYFYERMWTKLKSQ--GAWEGEIWNRRKSGELYLTWAKILTVK-KNSQVIYYVSVE 328

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI++++  L+ I   A+QD LTG+ NR  F   ++  ++  A       T+M +D+D++
Sbjct: 329 TDISKRRIRLDEIEKYAYQDMLTGLFNRYYFESHISDHIEKGARQRQ-PFTLMFLDLDRF 387

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++NDV G   GD +L+S++ R+ EL++  D++ARL G+ F +  +           A  
Sbjct: 388 KEVNDVYGHQAGDKLLISVSNRLKELVREKDLVARLGGDEFLLFFVDMT-IDNAIKKAHK 446

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + IA P ++ +++  ++ASIG  ++         +LK A+ AMY AK  G N    + 
Sbjct: 447 VVEYIAKPYDIDDKQFIISASIGVVNYPQDGTDFEHLLKYADAAMYRAKDLGRNRFFLYN 506

Query: 697 VS--SFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     + IK+ L  A EN   + +++ P   L   +I G+E L + +HP  G + 
Sbjct: 507 QEISDKVCYDLKIKQVLNDAFENTDYIQVLFQPQYDLKQRQIYGIEILSRINHPDLGVVC 566

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ I + +  + + +  +L++  + I S  D        I  N+    ++  + C  
Sbjct: 567 PKDFIPILQSINQMPSFDKIVLQKACQQISS-NDMMLEQNFRISQNVTVPVIMSEQYCRE 625

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              +I +   SP R      E++ + + + +      L+K GIS+ +DDFG+  S LSYL
Sbjct: 626 FIDIIKQYKISPQRFSFEVIENIAIDDYKTACKNFCLLKKEGISVEIDDFGSGYSSLSYL 685

Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P   +K +   +      +   I R+II +A+++   +IA+ +  +     L +MGC
Sbjct: 686 AQFPITVLKIDSFFVQNIHHPREEKICRAIISLAESLNLKVIAEGVETKHQADTLYKMGC 745

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
              Q    + PL +  +L   K  
Sbjct: 746 YLHQGFLYSQPLSYEELLLKFKNH 769


>gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 592

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 229/440 (52%), Gaps = 5/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + + +   +L  A  D LT +PNR  F+D+++ ++      +N    V+ +D D++K +N
Sbjct: 149 QLQIANYKLLEMALHDPLTKLPNRALFMDKISLVIKSVKEGNNHGFAVLFMDCDRFKVVN 208

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L+++  RI ++LK  D+L+RL G+ F II+   N    + + A ++ + 
Sbjct: 209 DSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGDEFAIIVHDVNEIEPVRNLANSILEV 268

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++ P  +  REI +  SIG             +L++A+ AMY AK  G      F   + 
Sbjct: 269 MSCPFQIYSREIFINMSIGVVLSNRDYEQPEHLLRDADTAMYRAKALGRGQYHIFDPAMH 328

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               D + ++ DL  A+EN EL   Y PII L   +I  +EAL++W HP+ G +    F+
Sbjct: 329 KEALDLLGLETDLRRAIENQELIPYYQPIINLETGKISSMEALVRWQHPQRGLVPPGMFI 388

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE+ +I  I   ML      + +W++Q      + + +N++ +     +L   +  +
Sbjct: 389 PLAEEMGIITTIGTLMLVEACHQLKNWQEQKLVDESVSMSVNLSVRQFTQADLIATVDDI 448

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++++  +P  ++L  +ES ++ N + +R +L + R   I L+LDDFGT  S LSYL   P
Sbjct: 449 LAESGLNPKCLRLEMTESAIVENTQTARTILTQFRDRHIGLSLDDFGTGYSSLSYLHAFP 508

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S ++      + + ++ +II ++K +    +A+ I     + +L  + C+  
Sbjct: 509 VDTIKIDKSFVSLLDGTPENLGLIPAIIGISKTLNMVAVAEGIETAEQLAQLRELECNSG 568

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + PL    + +LL  
Sbjct: 569 QGYFFSRPLPATQMAELLAS 588


>gi|39934196|ref|NP_946472.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|192289722|ref|YP_001990327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|39648044|emb|CAE26564.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
 gi|192283471|gb|ACE99851.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 776

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 139/698 (19%), Positives = 280/698 (40%), Gaps = 48/698 (6%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
             + W  +      +    +     +       +A+         V     +      + 
Sbjct: 87  EADVWERRYRLGAIAHGISLGAWSLVVLLGTDDSAAHM-----LCVATVVAYTSAGVGRT 141

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           + R  +     +L     I   + +            L   L+  V  I    +   L  
Sbjct: 142 FGRPQIFHLQVLLSCGPLIFAMVRVGG-------VYYLTLALLSAVFFISIRHLTSSLQR 194

Query: 394 GYFSQGIFSDGE-----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            Y +  I  + E     +   A+      +  +             A ++ L    + G 
Sbjct: 195 IYLNAWIGREREAALANQFDTALNNMPHGLCMFRADGRLAVMNHRFAEMMRLRDELVKGS 254

Query: 449 IRNW--------LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                       +  I         + ++S +      +  E            +    +
Sbjct: 255 PTATEIVSACVAIGAISAASGRLILSEIESALAGEIVTVGDETI-------PRSLCWTFQ 307

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           PM++        + +  DITE++ +   I+  A  D LT +PNR SF D +  IL+    
Sbjct: 308 PMADG-----GAVVLIEDITERRNAEARIVHLARYDELTALPNRVSFRDEIERILEAEHG 362

Query: 561 DDNLRP-TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               R   ++ ID+D++K+IND LG   GD +L S+  R+ ++L+  D +AR  G+ F +
Sbjct: 363 RGKTRLSALLFIDLDQFKQINDTLGHPCGDRLLCSVAERLRDMLRPDDYVARFGGDEFVV 422

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
              +  ++   A  A  +   ++    +    + + ASIG A  +     +  +LKNA++
Sbjct: 423 FQQNIASNEDAAALARRIVDRLSDRYLIDHHVVEIGASIGIAMTSP-GTKADILLKNADM 481

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G  +   FR    ++      ++ DL  A+ N E  L Y P++ L   +I  
Sbjct: 482 ALYRAKADGRGNYCFFREEMAQTVEARRILELDLRKALANEEFELYYQPLVNLKSGKITT 541

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP  G +S  + + +AE++ +I  +  ++L +   + + W +     P+ + 
Sbjct: 542 CEALLRWNHPVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACMECMLWPE-----PVSVA 596

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN + +     ++   ++  +  +    SR+++  +ES ++ N + +   L +L   G+ 
Sbjct: 597 INFSPQQFHQRDVLTEVRYALEVSGLPASRLEIEITESSLLRNTQWTHDALQQLHAEGVR 656

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAK 916
           ++LDDFGT  S LSYL   P   VK + S + G    R   +LR +  ++ ++  +++ +
Sbjct: 657 ISLDDFGTGYSSLSYLHSFPLQKVKIDRSFLEGIDSDRPLTLLRGVARLSSDLGMSVVVE 716

Query: 917 DIYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLL 953
            I     ++ ++  G     Q    + P+    I +LL
Sbjct: 717 GIETNEQLELISADGTVTEAQGYLFSRPVPAQRIRQLL 754


>gi|167032364|ref|YP_001667595.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida GB-1]
 gi|166858852|gb|ABY97259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 818

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 127/590 (21%), Positives = 249/590 (42%), Gaps = 15/590 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           +         +++I I +     +LA    F+  +  + ER  + +   GD V   D+  
Sbjct: 206 VLLITNLLTAMVLITIAWRRSSKLLAQRQAFASALQEEKERAQITLQAIGDAVITTDVEG 265

Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEF 483
                 P    +    +    G P+      +     +  R++++  +    +G  ++  
Sbjct: 266 SIGYMNPAAEQLTHWQASQALGLPLSAMFSLVDEQAEEEGRSLVEQVLSGSLKGGAEHAR 325

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            ++  D     + +   P+  S+G +   + + +D+T++++ +  +   A  D LTG+ N
Sbjct: 326 LIQRLDGSTVSINLVGSPIV-SDGQVSGIVLVLHDMTQERQYIANLSWQATHDALTGLAN 384

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+ F  RL   L+  A     R ++M +D+D++K +ND  G A GD++L  +   +   L
Sbjct: 385 RREFEYRLEQALNGLARQAG-RHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQSGL 443

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFAS 662
           +  D LARL G+ FG++L +     +    A  +R+ +         R    T SIG   
Sbjct: 444 REGDTLARLGGDEFGVLLENCP-PDQAERIAEQLRQMVQSLHFVWKGRPFVTTVSIGLVH 502

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENS 718
              +  T    L+ A++A Y AK +G N V+ +         R   +   + L +A+E +
Sbjct: 503 MAQAPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVALEEN 562

Query: 719 ELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
              L    I  L   E    +E L++        I  S F+  AE   ++ A++ +++  
Sbjct: 563 RFCLYAQEIAPLKSFEGPGHIEILLRLHDESGRTILPSSFIPAAERYGLMTALDRWVVRN 622

Query: 778 IARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +   I    D+    P+ I  IN++   + D++  E +Q L  +    P  I    +E+ 
Sbjct: 623 VFLVIRQCLDEGREGPLSICAINLSGSSIGDDKFLEYLQRLFVEYAIPPRMICFEITETS 682

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K +GS +        
Sbjct: 683 AIANLGSAIRFINELKGLGCRFSLDDFCAGMSSFAYLKHLPVDYLKIDGSFVKDMLDDPV 742

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             A++  I  +   +    IA+ +   +  + L  +G DY Q   +  P 
Sbjct: 743 NRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQ 792


>gi|240140850|ref|YP_002965330.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           precursor with PAS sensor [Methylobacterium extorquens
           AM1]
 gi|240010827|gb|ACS42053.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           precursor with PAS sensor [Methylobacterium extorquens
           AM1]
          Length = 563

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/479 (25%), Positives = 214/479 (44%), Gaps = 31/479 (6%)

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            RVR        +   + P+         +     D+TEQ          A Q+ LTG+ 
Sbjct: 83  VRVRLTLGGDRRVEAALAPL-----SAGGFAITFEDVTEQ----LRGAALARQEPLTGLC 133

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DRL   L  +A        V+++D+D++K +ND LG  VGD +L  +  R+   
Sbjct: 134 NRVGLHDRLDAALIEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192

Query: 603 LKFPDILARLSGNRFGIILIS------------ENNSLKIADFAIAMRKSIAMPINLLER 650
            +  D++ARL G+ F I+ +                       A  +   +     +   
Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPQGSPHIGVEQPHAAEALARRLVDLVGRTYVVDGH 252

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            + V  S+G A   +    + ++LK+A+LA+Y AK  G      F  +     +    ++
Sbjct: 253 MLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLE 312

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+   +  L + P I+L   ++ G EAL++W+HP+ G +S + F+ +AEE+ +I 
Sbjct: 313 IDLRRAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIV 372

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R+   W       P  I +N++        L E +  ++++T   P+R+
Sbjct: 373 GIGEWVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTGLDPARL 427

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E  ++ N +    +L  LR +G+ +++DDFGT  S LSYL   PFD +K + S +
Sbjct: 428 ELEITEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFV 487

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            G        AI+R+I  +  ++     A+ +     +  +   GC  +Q      P+ 
Sbjct: 488 RGMEGNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPMP 546


>gi|300854666|ref|YP_003779650.1| hypothetical protein CLJU_c14800 [Clostridium ljungdahlii DSM
           13528]
 gi|300434781|gb|ADK14548.1| conserved protein with a sensory box/GGDEF and EAL domain
           [Clostridium ljungdahlii DSM 13528]
          Length = 557

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 131/554 (23%), Positives = 250/554 (45%), Gaps = 17/554 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + A+      +  W+I    +  +     I G    ++           +  D+     
Sbjct: 15  YTYALNTGNVGICKWNIDTGEMAIS---EKITGYKFNAIKSMNEFINIITYEKDKMMAIQ 71

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN-DITEQKKS 525
            LD ++       Q  FR++       W++++ +   +   +    +G+   +IT  K  
Sbjct: 72  DLDDYINGSLEFYQSTFRIKTKCGDIKWVLLKGKIFKDET-ESSGVLGVLIFNITNMKFY 130

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                     D+LT +PNR+ FL +L   +  +   +     ++ IDI+  K IN   G 
Sbjct: 131 ERW-------DSLTNLPNRRFFLIKLNNSIKTAKIHNK-SGALIYIDINNLKIINHNFGH 182

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L S  + I  LL     L RL G+ F I++   N+  +I      + K +    
Sbjct: 183 RFGDWILKSFAKSITVLLGKRGELFRLEGDEFAILVYQFNDIKEIEKMCNKIHKCLKKSF 242

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            ++ +EI ++ S+G   +        E+LK     +Y +K +G N    F     +    
Sbjct: 243 KIMGKEIYISTSLGVTVFPDDSSDPDELLKFCNFTIYRSKGKGKNECTFFDKQKAQPYFR 302

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            I  + +L  ++ N+EL + Y P I  ++ +I+G+EAL++W++ K GN+  +EF+ IAE+
Sbjct: 303 KILIESELKNSIINNELDIFYQPQINALNNKIIGVEALLRWNNNKLGNVPPTEFIPIAED 362

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I  ++L +      SW+++       I +N++   L  ++    +  + +K   
Sbjct: 363 NGYIVQIGNWVLNKALETACSWKEKGYKFN-TISVNVSPIQLKKSDFKSNILNICAKHNV 421

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            PS + +  +E  ++   E    LL  L + GIS+ +DDFGT  S L+YL  +P +T+K 
Sbjct: 422 EPSLLGIEITERTLIEIGEDRIELLNELMESGISIAIDDFGTGYSSLNYLINLPINTLKI 481

Query: 884 NGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + S +         A++ SI+ ++K ++  +I + +     + E+  +GC+ IQ  + + 
Sbjct: 482 DKSFIPNIHNDKNKAVIGSIVKLSKYLKYKVITEGVETREQLDEIVSLGCNLIQGYYFSK 541

Query: 943 PLGFNSILKLLKER 956
           PL  N I  LLK +
Sbjct: 542 PLKENKIEDLLKNQ 555


>gi|91778946|ref|YP_554154.1| RNase II stability modulator [Burkholderia xenovorans LB400]
 gi|91691606|gb|ABE34804.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 667

 Score =  465 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 129/542 (23%), Positives = 246/542 (45%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+   ++ G    W  ++   D       +  F   R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIIGRN-VWALFMSTEDGAASSQNIAGFF-NRGVSYEV 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R++    +  ++       S S  +    I    DITE++ + E +   A  D+LTG+
Sbjct: 187 ERRIKTVHGERLFLFRNKFVHSGSGVEEQFLICSGTDITEERLAQERLTELANTDSLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  DR+   ++ +         V+ +D+D +KK+ND  G   GD ++  ++  I  
Sbjct: 247 ANRNAIQDRIRAAIEDA--TPGEAVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSSAISL 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L +   + ++   A  + + +  P +L   E+    SIG A
Sbjct: 305 CLNEGDTLARLGGDEF-IVLAARGTAHELEVTAQRILERMRTPFSLGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +     +   ++++A+ AMY AK  G      F     R   + + +  +L   ++  +
Sbjct: 364 RYPEHGDSLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLDEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G EAL++W+ P+ G I  ++F+  AEE  +I  +  +++E   
Sbjct: 424 LTLHYQPKLSLATGVVQGAEALVRWNSPERGQIMPTKFIRYAEESGLIGVLGRWVMET-- 481

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               + + +A+   + I IN++++ L+D  +       +      P  I L  +ES ++ 
Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFSEALQHANLDPCLIDLELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897
           +   +  L+ + R++G  + LDDFGT  S LS LG IP D +K + S +    +  K  A
Sbjct: 542 DETAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADPKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ +   ++A+ I  E +   +  +G DY+Q       +      + L++R 
Sbjct: 602 LVRSMVVVAQELNFKVVAEGIETESEELFMRGLGVDYVQGFLYGQAMPAAEFERWLQDRQ 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|289208761|ref|YP_003460827.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288944392|gb|ADC72091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 842

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 144/582 (24%), Positives = 268/582 (46%), Gaps = 12/582 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIA 435
           +I +++G   +         ++ +    +R    +     +++  + +    +  + + A
Sbjct: 262 VIALVLGLMAVWLRRTVRAQTRALREANQRLEHLLESGPVVLYQLNALDFKPLWVSGNFA 321

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            + G  S         W   +H  DR             R   +  E R+     +   +
Sbjct: 322 RLFGFNSRVAL-QPGWWEQQVHPEDRATAMRENRRLQEER--HMVRELRLFDGWGKLRHI 378

Query: 496 IIRIRPMSNSNGDILR--YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              +R +   N        +G   D+T   +  E +   A  D  TG+PNR    DRL  
Sbjct: 379 RDEMRIIPGGNQGQRGAEVVGSWTDLTASMEQKEALRQMAHYDARTGLPNRVLLHDRLGH 438

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L+ +  D   R  V+ ID+D+++ +N+ LG + GD VL  L  R+G LL   D ++R+ 
Sbjct: 439 TLERAMADGLARWVVL-IDLDRFRNVNETLGTSAGDRVLEGLAERLGGLLGPQDTVSRVG 497

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            + F +I+ +         F   + +++  P  +  R +  TAS+G A++     T  E+
Sbjct: 498 ADEFCLIIENPPMDGGAEAFLEQLLETLREPCAIGGRALVTTASVGLATFPEHGNTRDEL 557

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L  AELAM  ++  GG+    +          R+ ++ DL  A+ N EL L + P + + 
Sbjct: 558 LTAAELAMAASRSVGGDTWHVYEPGMGAQTEHRLFLENDLRSAIANDELLLYFQPQLEMQ 617

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              +VG+EAL++W HP  G +S +EF+ +AEE  MI+AI+ ++L      +  W      
Sbjct: 618 SGRLVGMEALVRWRHPVRGMVSPAEFIPLAEETGMIQAIDRWVLNAACAQLAHWDQDGRG 677

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P  + +N+++++L D  L   +Q ++      P R++L  +E+++M  PER+  +L RL
Sbjct: 678 VP-TVAVNLSARELHDETLVAAIQEILEHHGLEPDRLELELTETMMMEQPERALAVLHRL 736

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909
             +G++L +DDFG   S L++L  +P   +K + SL+          +I+R+II +A  +
Sbjct: 737 ETLGVTLAMDDFGAGYSNLAHLRRLPLRRLKIDQSLVRDIGHSRNNESIIRAIIALADAL 796

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +IA+ +        L R GC + Q   +  P   ++ L+
Sbjct: 797 GLDLIAEGVEEAGQQAFLLREGCRFGQGYLLGRPAPADNALQ 838


>gi|209543353|ref|YP_002275582.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531030|gb|ACI50967.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 698

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 134/583 (22%), Positives = 246/583 (42%), Gaps = 34/583 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-----------WDIVRDRVTTTPDIAT 436
           +   +     Q + +    Q+  + GS D +              D   + +      A 
Sbjct: 129 KRARSPVQLEQELENSRAAQAEILRGSRDRLLQVIDTVPALVSATDAEGNYIFVNRFHAR 188

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           ++G  +G       + L      DR          +       +YE  +         ++
Sbjct: 189 VMG--AGQGRNDAASQLR-----DR--------QVLETGLPTARYEESIADRYGMERILL 233

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               P  +    +   +  + DIT++KK+   +   A+ D LTG+P+R      +  +L 
Sbjct: 234 TSKIPFYDDASGMRYVLTTSLDITDRKKAERELHHLAYYDQLTGLPSRSKLETEMQVLLR 293

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
               D       +++D+D++K IND  G  +GD +L  +  R+   L    I+ARL G+ 
Sbjct: 294 QRGAD-GPPFAFVLMDLDRFKGINDTQGHTIGDLLLRKVALRLRTALPRAGIIARLGGDE 352

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  I+    ++   A  A  +    A P  L +R  +V AS G   + +   T   +LK 
Sbjct: 353 FA-IVHDVIDAADAAHMAERIVGIFARPFTLGDRVTSVGASAGVTLFPARGATFETLLKR 411

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LAMY AK+ G      F     ++      +++ L  AVEN E  L Y P I L    
Sbjct: 412 ADLAMYRAKNEGRCRYAFFDEEMEQAFAATTELEQALRRAVENEEFVLHYQPQIDLASGT 471

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G+EALI+W  P    +    F+ +AEE  +I  + ++ L    R    W+       I
Sbjct: 472 LCGVEALIRWVQPGGDLVHPGCFLPLAEETGLIAPMTVWSLREACRQAARWQSDGIH--I 529

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++      +++   +    ++    PS ++L  +E+ V+ NPE +   L  L+++
Sbjct: 530 RVAVNLSGVLFRQHDVHRLVVDATTEAGLDPSFLELELTETAVIENPESAGRQLAALQQM 589

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+S+ +DDFGT  + L YL  +P   +K +   +     +    AI+++II + KN+   
Sbjct: 590 GVSVAIDDFGTGYASLVYLTRLPIHRLKIDRVFIQDLGSSPGSRAIVKAIIALGKNLGIR 649

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +IA+ I  +  ++ L    C   Q  +   P+    +  L+  
Sbjct: 650 VIAEGIERQDQLRWLEEQDCQEAQGFYFGYPVPPAKLQDLVDS 692


>gi|66047720|ref|YP_237561.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63258427|gb|AAY39523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 972

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 233/440 (52%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + +   A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++  S  +   I   A  + +
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVE 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  ++I V+AS+G A++      +  +LKNA+ AMY AK  G N+ + +    
Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNFKFYNARM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+E  E  L + P + L D  I GLEAL++W+HP+ G +S ++F
Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++ ++   +  W +      + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKRWEENHIRL-VPIAINLSVRQLQVKGLAETVKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+  +    ++K 
Sbjct: 939 QGYLFSKPVISDECAAMIKS 958



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 89/286 (31%), Gaps = 20/286 (6%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
            +  +SF    + A +  + + + +    + +I   + G+     L     L        
Sbjct: 139 GVMRLSFNAERIAAELYSLVIQATLFAGFFLLISLMLMGFMIKRSLAHLGKLHSYEAEIA 198

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             A+       ++       +   +  +  T        G   + + +   +   A+   
Sbjct: 199 SGAVA---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEV 255

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS--FV 472
             IV +               T    +   +          + I++     +  +     
Sbjct: 256 S-IVCEVSASGRITYVNERFVTSSQHSRAELLE--------LTIDEVWTGMSSANEPWLW 306

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E R+     +  W    + P+ +  G + +YI I  DIT++K+    IL N
Sbjct: 307 APENKVWNGEVRLSGRTGKEAWHQRTVIPILDDLGGVEKYICIDIDITDRKEFEVAILDN 366

Query: 533 AFQDNLTGIPNRQSFLDR----L--TTILDLSATDDNLRPTVMVID 572
           + + NL  +  +Q+  +     L     L  +      +  ++V+D
Sbjct: 367 SRRQNLIALFGQQALTEENVSVLGERAALTAAQGLKLSKAALLVVD 412


>gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille]
 gi|151281539|gb|ABR89949.1| signal transduction protein containing a membrane domain, an EAL
           and a GGDEF domain [Janthinobacterium sp. Marseille]
          Length = 709

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 223/433 (51%), Gaps = 7/433 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A QDNLT +PNR    DRL  ++  +  + + R  +M ID+D +K IND LG
Sbjct: 255 ANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQS-RFALMFIDLDGFKAINDSLG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L+ + +RI + ++  D  ARL G+ F +++   N     A  A  +  ++  P
Sbjct: 314 HHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIE-VNEPEDAASVADKLCTTLNQP 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
            ++ +  + ++ASIG A +     T  ++L +A+ AMYH K  G N    F   ++    
Sbjct: 373 FDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASMNINAH 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +++ + +DL  A+E  E  L Y P     D  +VG EAL++W HP  G ++ ++F+ +AE
Sbjct: 433 NQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L+   R +  W D+       I +N++S    ++ L E ++  +++  
Sbjct: 493 KTGLIVPIGEWVLDEACRQMRKWYDE-GYQQWKIAVNLSSVQFSNDNLVEMVKETLARNN 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +ES  M N E S  +L +L  +G+ +++DDFGT  S L YL  +P   +K
Sbjct: 552 LPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELK 611

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          +I+ +I+ + +++   I+A+ +  E   + LT +GCD +Q   +
Sbjct: 612 IDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYFM 671

Query: 941 ASPLGFNSILKLL 953
             P+     +  +
Sbjct: 672 GHPMASEQFMAAI 684


>gi|74317024|ref|YP_314764.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056519|gb|AAZ96959.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 730

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 129/439 (29%), Positives = 234/439 (53%), Gaps = 6/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ + + I   AF D+LTG+PNR SFL+ ++  +D S    N    ++ +D+D++K +N
Sbjct: 279 ERQDNEQRIRHQAFHDSLTGLPNRNSFLEHISEAIDRSKRSGN-PGALLFLDLDRFKLVN 337

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L     RI + L+  D+  R+SG+ F +IL S +     A  A  + + 
Sbjct: 338 DSLGHDAGDQLLRITASRIQKCLRETDMAFRMSGDEFVVILESVDKGEHAALAAQRVMQE 397

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A+P++L   E+ V  SIG  ++         +LK A+ AMY AK  G NH E       
Sbjct: 398 MAVPMSLSGCEVIVNVSIGITTFAGDSADVQALLKEADSAMYRAKQVGQNHYEFHTPDMN 457

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++ DL  A++N E  L Y P I    + IV +EAL++W+HP  G +  + F+
Sbjct: 458 SAAHERLSMETDLQRALQNQEFVLHYQPKIDTATKAIVSVEALLRWNHPTRGLVLPNTFI 517

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+  +I  +  ++L + A    +W D     PI + +NI++K    + L E ++  +
Sbjct: 518 PLLEDTGLINPVGEWVLLQAACQAQAWIDAGL-EPIRMSVNISAKQFRSHILVETVRRTL 576

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +      ++L  +ES+ + N ERS  ++  L+ +G+SL++DDFG+  S L+YL   P 
Sbjct: 577 GASQLESRYLELELTESMFIENAERSIQIMQELKCLGVSLSIDDFGSGYSSLAYLKQFPV 636

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +T     +K  AI  +I  +A +++  ++A+ +  +  ++ L + GC  +Q
Sbjct: 637 DYLKIDRSFVTDLVSNKKDAAIAVAIAALAHSLDLKLVAEGVEDQAQVEFLEKQGCHELQ 696

Query: 937 DSHVASPLGFNSILKLLKE 955
                 P+    + ++L++
Sbjct: 697 GYLFGRPVSAEELEQVLRQ 715


>gi|83749334|ref|ZP_00946331.1| Hypothetical Protein RRSL_01002 [Ralstonia solanacearum UW551]
 gi|83724012|gb|EAP71193.1| Hypothetical Protein RRSL_01002 [Ralstonia solanacearum UW551]
          Length = 732

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 210/436 (48%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   K+ + +   A  D+LT + NR    DRL   +  +  +      +M +D+D +K +
Sbjct: 281 TSLAKANKELAYLALHDSLTKLSNRLLLEDRLEQAIRSAGRNRG-SFALMFLDLDGFKAV 339

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G   GD +L  + RRI   ++  D +AR+ G+ F  +L S          A A+  
Sbjct: 340 NDVYGHHAGDLLLADVARRIVACVRLQDTVARVGGDEFV-VLASVGEPADAGTLADALLA 398

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P  +    + V+ SIG A +     +  ++L NA+ AMYHAK  G +    F  S 
Sbjct: 399 AAREPFLVDGHALRVSTSIGIALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASM 458

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++ + +DL  A+E  EL L Y P     D  +VG+EAL++W HP  G +    F
Sbjct: 459 NANVHKQLQLVQDLRQALERRELVLHYQPKFSAPDGPVVGVEALVRWQHPSRGLVPPDAF 518

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  ++L+   R +  WR +       I +N+++       L + ++  
Sbjct: 519 IPLAEKTGLIVPLGAWVLDEACRQMAQWRRE-GRTSWSIAVNLSAVQFAHAALVDTVRDT 577

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 578 LARHALEPPCLTLEITESTAMRDADASLRILQQLHAMGVRISIDDFGTGYSSLLYLKRLP 637

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +       +  AI+ +++ + + +   I+A+ +  E     LTR+GC  +
Sbjct: 638 ASELKIDRGFVRDLAHDTEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHAL 697

Query: 936 QDSHVASPLGFNSILK 951
           Q + +  P+   ++ +
Sbjct: 698 QGNLLGRPMTAQALAE 713


>gi|284990037|ref|YP_003408591.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063282|gb|ADB74220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 641

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 131/532 (24%), Positives = 240/532 (45%), Gaps = 17/532 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+    +     +  + G     M G   + L   H  D        D  +     R+  
Sbjct: 53  DLDGHLLVVNDALCVMTGRTPEDMVGRHVDLLA--HP-DEAPVPDRADGPLDPWL-RVDG 108

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R+R AD    W       +  S G     +    D T+++++ E ++  AF D LTG+
Sbjct: 109 ERRLRRADGTELWATQSHEVIHTSTGTPQFVVLSLIDGTDRRRAEEDLVRRAFTDPLTGL 168

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR++  DRL   L LS     L+  ++ +++D+++ +NDVLG   GD +L+ +  R+  
Sbjct: 169 PNRRALNDRLNHALALSRRR-GLQVGLVHLNLDRFQAVNDVLGNEAGDQLLIQVADRLRW 227

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             +  D   RL G+ F I+     +   +   A  +   +  P  + +REI ++AS+G  
Sbjct: 228 STRVEDTAVRLGGDEFLILAEDVEDLDGLRTMADRLLGVLDDPFLIGKREIVLSASVGLT 287

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
               S +   ++L+ A  A+  AK  G      V    +S    D++ ++ DL  A+E+ 
Sbjct: 288 L--GSDVAPDDLLRQAHAALTRAKADGSRARIEVHDGGLSDSEVDQLQLEADLRNALESD 345

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL L Y PI+ L DE ++G EALI+W HP  G +    F+  AE+  +   +  ++L + 
Sbjct: 346 ELRLFYQPIVSLHDETLLGYEALIRWQHPTRGLLPPGAFLTAAEDNRLTSRLGAWVLRQA 405

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D   W        + + +NI+++ L +    E +   ++++   P R++L  +ES  +
Sbjct: 406 CFDAAGWPA-----GLRVHVNISARHLAEPGFAELVTDALAESGLPPERLELEITESTAL 460

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
              + +   +  +   G++L LDDFGT  S ++ L  +P  TVK + S +    +     
Sbjct: 461 FAADATLHAVSEVTDAGVTLALDDFGTGYSAITALHRLPIHTVKIDRSFVADVVTEPSTA 520

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           A+++ ++ +   +   +IA+ I        L   GC+  Q      P    +
Sbjct: 521 ALVQGLVQLGLGMGLQVIAEGIEDLDQADWLREHGCEMAQGYAFGRPAPLPA 572


>gi|295401312|ref|ZP_06811284.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111870|ref|YP_003990186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
 gi|294976719|gb|EFG52325.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216971|gb|ADP75575.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. Y4.1MC1]
          Length = 802

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/578 (21%), Positives = 259/578 (44%), Gaps = 33/578 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            + G ++++ +       + +    E     +    D +             P       
Sbjct: 243 AVAGLSILRDMTDFIQVREQLQQSEELYRKVIEFLPDPII-IQADGVIHYMNPA------ 295

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                        L  +     D  +    S    +R + + E+ + +   +   + ++ 
Sbjct: 296 ------------GLEMVKAERIDFVKGKRLSDFLEKREQQENEWVLTSLCGEQKEVDVKA 343

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + +  G   +++ I  D++EQK   + I   A  D +T +PNR    ++L  +L    
Sbjct: 344 MSI-DYYGQSAQFL-IIRDLSEQKSKEKKIEFMAQYDPITVLPNRNYLREKLNELLLR-- 399

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              ++   V+++D+++++ IND LG + GD++L  + RR+ ++      L+R+  + F +
Sbjct: 400 ---DVSIAVLLVDVNRFQFINDFLGHSNGDELLKEVARRLKKIQSEQVFLSRIGDDEFAV 456

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +        ++      + + +  P  +   ++ VT +IG +    +  +   +L NA  
Sbjct: 457 VYTYNK-KEEVNWLLKKLDRLLNEPYFIAGEKLNVTINIGVSYAHDADRSVETLLSNAGK 515

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y+AK  G + V  ++         R+ ++ DL  A+EN+E  L Y P + +    +  
Sbjct: 516 AVYYAKTNGVHRVVQYQSKLHDIFVKRIRLENDLQTALENNEFSLYYQPKVNVQSGTV-S 574

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EALI+W HP+ G +S +EF+ IAEE  MI+ I  ++L++   D+ +         + + 
Sbjct: 575 VEALIRWKHPQLGMVSPAEFIPIAEETNMIERIGKWVLQQSCDDLKTLHKS-GFSALKMA 633

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++  +D+ L   +  +++     PS      +E+ +M  P     +L  L++ GI 
Sbjct: 634 VNLSARQFMDSSLKATVSNILTSADVPPSSFVFEITETTIMKEPNEVIRILQALKEQGIM 693

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           + +DDFG   S L+YL   P D VK + S +    E R    I+ +II +A  +  ++ A
Sbjct: 694 IAIDDFGVSYSSLNYLNRFPIDAVKIDRSFIRDFHENRKGAEIVEAIISLAHRLNLSVTA 753

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  E  ++ L   GCD +Q  + + P+    +  +L
Sbjct: 754 EGVETEEQVRFLLEKGCDEMQGYYFSRPVPLEQLPNVL 791



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 9/174 (5%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
             R+   +I P       +  ++     I   +A     + I    +     +  + D +
Sbjct: 100 EWRIAESMIVPVFTKDGTMPYMVCFTRDITEQIAREKQFEEI---HQLFHSFLEQTHDAI 156

Query: 419 WDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
             +D+    +    +   +LG +    +   I ++L           +  L      +  
Sbjct: 157 VMFDLAGRVLRVNREAERLLGWSEKEVLAKKIADFL----PGHHGKLQQSLQKLSRGQTL 212

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                  +   D +   +   + P+  ++G  +  + I  D+T+  +  E +  
Sbjct: 213 T-SVHLSLVRKDGKKVHVSANVTPVFGNDGTAVAGLSILRDMTDFIQVREQLQQ 265


>gi|90420618|ref|ZP_01228525.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335346|gb|EAS49099.1| possible signaling protein with EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 808

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 153/810 (18%), Positives = 315/810 (38%), Gaps = 57/810 (7%)

Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238
             +   V        +   +     +   +  +++R+S +       W+ +       G 
Sbjct: 2   AAFAQNVLVDHSLGFVATALVVCAIMAAIVLTVLDRASSVEGGRRYTWMAVSAAVAGLGV 61

Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW-----HAKVGYITFSGIACI 293
            +       G         +  ++   +    +++          H++   +    IA +
Sbjct: 62  WTTHFVAMLGFRPDVVLGYDPMVTIVSVFVGILFVGLPLAATVLVHSRAARMALGAIAGL 121

Query: 294 A----------ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
                       L      Y  +   I+    A               +     ++++  
Sbjct: 122 GVGAMHFTGMSALQGCLAAYDPLVTLISLFAGAGFFAAAMSMPPRGKQRLAVATLMVLGV 181

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-----FSQ 398
             L FI   GL ++     +  I++P  +   V +  L+ F     +   G         
Sbjct: 182 CFLHFIAIAGLTLSAAPAAEVWIVEPVTLSAFVALAALMIFITAFILAVNGEKLDASSRA 241

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWL 453
                 E   +   A+    + +                  +LG+    +     + ++L
Sbjct: 242 AAADAAEHLRVLSAALQNMSNGLVMVGPDGIITLHNERAYELLGIGPNELRSGLALSSFL 301

Query: 454 PYI-HIN--DRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               H    D      ++D+      R    + E  +  AD +   +     PM++    
Sbjct: 302 DNFGHKAGWDAARIDRVIDNHTVWMRRSTITRVEHHL--ADGRVIGVACC--PMADG--- 354

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               I   +D+TE ++    I   A+ D LTG+PNR+SF D L    D +        T+
Sbjct: 355 --GAILTYDDMTEARQVQATITHMAYHDALTGLPNRRSFQDELKARFDSAK-----PTTI 407

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID+D++K +ND LG  VGD +L+ +  R+       D++ RL G+   I+   + +S 
Sbjct: 408 VMIDLDRFKAVNDTLGHPVGDALLIQVADRLRACCNPNDLIFRLGGDELAILPGDDEHSD 467

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  + +    P    +  I++  S+G A+          + + A+LA+Y AK  G
Sbjct: 468 ---TLARRVVEGFERPFTADKHRISIGCSVGLATADDVDDPDLVV-RQADLALYKAKKNG 523

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +E +   +      R  ++ D+  A++  +  L Y P+  L   E+VG EALI+W+H
Sbjct: 524 RNRIERYESGMMEDAVKRRDLEMDMVRALKEGQFSLNYQPLFNLPTRELVGFEALIRWNH 583

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +   EF+ +AEE  +I  I  ++L    R+   W  +     +++ +N++   L 
Sbjct: 584 PTLGLVPPVEFIPLAEETGLITEIGEWVLNEACREASHWPGE-----LYVSVNVSPVQLH 638

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             ++   +   +++   +  R++L  +E+ ++ +  R    L  LR +G+ + +DDFGT 
Sbjct: 639 KTDMLRQVTRALAEHGLTAQRLELELTETAMVDDGRRINATLTALRSLGVRIAMDDFGTG 698

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L++L     D +K + S +  + +    +A+LR++  MAK++      + +  E  +
Sbjct: 699 YSSLAHLREFDLDRIKIDRSFIDSAPDDVSSLAVLRAVTMMAKDLSIATTGEGVESEEQL 758

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             L  +GC   Q   +  P+   +   L++
Sbjct: 759 ARLLDLGCGTAQGYLLGRPMTAEAARALMQ 788


>gi|39935221|ref|NP_947497.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39649072|emb|CAE27593.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS domain [Rhodopseudomonas palustris CGA009]
          Length = 709

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 144/672 (21%), Positives = 284/672 (42%), Gaps = 41/672 (6%)

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMK------GYERAVLLIPAWILIFIWFIGLWM 356
                 +   ITLA+++        Y G++      G  R   +I            +  
Sbjct: 42  SAPDAHTWGMITLAAVLCALGVVAAYGGLRSIRVSEGKGRRHWIIATCFASLSAVAAVVA 101

Query: 357 AITKRLDNDIIQPALVGGLVL--IVILIGFTVIQHVLATGYFSQGIFSDGER---QSLAV 411
                  +  + P +   L++  ++   GF  +   L++    +   +  ER       +
Sbjct: 102 LALLAASDAPLAPTIALVLMIGSVIATTGFASLAVWLSSIAGRRTQLTLAERDMVLDAIL 161

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLAS--GSMHGPIRNWLPYIH-----INDRDNF 464
             +      +D V            I G+          +R  L  +      ++D+   
Sbjct: 162 NDAARGFCLFDAVGRLQLWNEAFLDIYGIPPGREIAGHSLRRTLAVMQNSGNFVSDKRQL 221

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +  +        L  E R    D +   + +R       NG    +I   +D+T+ K+
Sbjct: 222 IELGAALASGGPASLVAELR----DGRHIRIDLR----RLPNG---GWIAKHSDVTDHKQ 270

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + +     A  D  TG+PNR +F DR+   ++ +   D     V+ + ID++K+INDV G
Sbjct: 271 AEQRFAYLALHDVATGLPNRAAFNDRIVQSVEQARRFDG-SFAVIRLGIDRFKEINDVFG 329

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AVGD VL  + RR+ +   +   LAR  G+ F I+   +  +  I D    + +     
Sbjct: 330 QAVGDAVLAEMARRLADTCHWG-FLARPGGDEFSIVTPPDAAADSIQDVCRQLTELCDTE 388

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
             +    + V A+ G + +      +  ++ +A++A+Y AK   RG   +    +     
Sbjct: 389 FEVDGHRVRVGATAGVSVYPRDGDDADTLIAHADVALYRAKTEQRGTVCLFEPAMDLQIR 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  ++ +L +A+E  +  + Y P       EIVG EAL++W HP  G +S + F+ +AE
Sbjct: 449 EKRALQRELAVALEQRQFEIHYQPQAS-TSGEIVGFEALLRWRHPVRGMVSPALFVPLAE 507

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  I+ ++L  +  +  SW       P+ I +N +  D    ++   +  ++ +T 
Sbjct: 508 ETGQIGPIDEWVLRSVCAEAASWAK-----PLAIAVNFSPLDFRRFDVPALILQILLETG 562

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SR+++  +E V++ +   +  +L +++ +G+ + +DDFG   S LSYL   PFD +K
Sbjct: 563 LEASRLEIEITEGVLIDDFAGAIAILRKIKNLGVRVAMDDFGAGYSSLSYLQSFPFDKIK 622

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + +      +  +  AI+ +I+ +A+ ++  +IA+ +  E  +  L + GCD +Q   +
Sbjct: 623 IDQAFTRKLETNPESAAIVEAILSLARTLKLPVIAEGVETEKQLAFLAQAGCDEVQGYLI 682

Query: 941 ASPLGFNSILKL 952
             P        L
Sbjct: 683 GRPQPIAHYRDL 694


>gi|288554460|ref|YP_003426395.1| putative signaling protein [Bacillus pseudofirmus OF4]
 gi|288545620|gb|ADC49503.1| probable signaling protein [Bacillus pseudofirmus OF4]
          Length = 634

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 116/432 (26%), Positives = 211/432 (48%), Gaps = 8/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + I   A+ D LTG+PNR    + L   ++ +  + N   T++ +D+D++K +ND+L
Sbjct: 194 QARKRIEHQAYHDALTGLPNRYHIEEYLKRSIEYAKVN-NSSLTLLYLDLDRFKLVNDLL 252

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +  ++ + +    ++ R  G+ F I+L   N   ++   A  +   ++ 
Sbjct: 253 GHQVGDLLLKEVAEKLSQTICENGMIGRQGGDEFLIVLEDMN-EEEVRAIAGRILDCLSY 311

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P     +E  ++ SIG + +         M+KNA+ AMY AK RG N+ + +        
Sbjct: 312 PFVYAGKEFFISPSIGISMFPKDGNDIESMMKNADTAMYMAKERGKNNFQFYSSEPSSLL 371

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++  L  A++N E  L Y P + L   E+ G EALI+W++P+ G IS  EF+ IA
Sbjct: 372 SRRHLLENKLRTALKNKEFILNYQPQVHLNSHELRGFEALIRWNNPELGLISPEEFIPIA 431

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  ++L+   R   +W++Q     + + IN++S+   D E    +  ++ ++
Sbjct: 432 EETGIITDIGTWVLKEACRQNKAWQEQ-GFVRVPVSINVSSQQFRDPEFVWNVLNVLKES 490

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +ES    +   +   L  +++ GI + +DDFGT  S LS L  +P D +
Sbjct: 491 KLHPQYLEIELTESTT-HHFVHTVEKLQLIKQYGIKVAIDDFGTGYSSLSALDQLPIDIL 549

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +        + AI ++II +  N++  IIA+ I        L    C   Q   
Sbjct: 550 KIDRSFIKHILTNPNKAAIAKTIIDLGHNLDFKIIAEGIEEPSQADFLNEHQCHIGQGFL 609

Query: 940 VASPLGFNSILK 951
              PL    + +
Sbjct: 610 FHPPLNPTDVAR 621



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
           A+  +  I+   D              I       + G     L    H +D   F  + 
Sbjct: 19  ALNEAS-IIAITDNKGTITFVNDMFCKISKYDRDELLGQNHRMLKSSYHSSD--FFVHLW 75

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            +    +    + E + +A D  F+W+   I P  +S G   +Y+ I  DITE+K + E 
Sbjct: 76  RTISRGK--VWRGEVKNKAKDGSFYWVHTTIVPFLDSRGKPYQYVSIRTDITERKCTEEL 133

Query: 529 ILCNAFQDNLTGIPNRQSFLDR 550
           +      D L    NR+     
Sbjct: 134 LKR--SLDQLAN-SNRKLLDHH 152


>gi|307946815|ref|ZP_07662150.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
 gi|307770479|gb|EFO29705.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Roseibium sp. TrichSKD4]
          Length = 777

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 232/449 (51%), Gaps = 8/449 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++   +L  A  D LT +PNR  F ++L ++L     + N +  ++ +D+D++K +N
Sbjct: 329 EKMRADREVLHLAHHDMLTALPNRLKFKEKLDSLLVRC-RNKNEQLALVFVDLDQFKVVN 387

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRK 639
           D  G ++GD+VL  + +R+  L    D + R  G+ F I++ +E+ N   +  F + +RK
Sbjct: 388 DSFGHSIGDEVLKIIAKRLKTLSSKTDSVFRFGGDEFVILVENESVNKDALVPFLVDLRK 447

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S++  I +  R   VTAS+G A +      +  ++  A+ AMY AK  G +  + +  S 
Sbjct: 448 SLSEAILVHGRTFHVTASLGVACFPDDGTDAETLVGRADSAMYKAKDAGRDVFKFYIPSM 507

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +    R+ + E++ + +E  E  LVY P + ++D +++G EAL++W+HP  G +    F
Sbjct: 508 SQGLAQRLTLLEEMRVGLETGEFRLVYQPQLDIVDGQMIGAEALVRWEHPYLGTLLPGRF 567

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+  +I  +  ++L +  RD  +W +  +     + +N++++   D++    +   
Sbjct: 568 IPLMEDTDLICQLGDWVLSQACRDAKNWNE-LSDDDRPVGVNVSARQFSDDDFVCRVNKA 626

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S++   P  ++L  +ES++  N +++  ++  LR +G+ L +DDFGT  S LS L   P
Sbjct: 627 LSESGLRPDLLELEITESLLFRNKDQAAEVMSELRDLGVQLAIDDFGTGYSSLSRLRSFP 686

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S ++    +     I ++II +  ++   +IA+ +      K L  MGC   
Sbjct: 687 LTRLKIDKSFISDLDRESGDQCIAQAIISLGNDLGLRVIAEGVETVAQQKILMEMGCREA 746

Query: 936 QDSHVASPLGFNSI-LKLLKERFPLVKNT 963
           Q  H   P+  + +    L +  P +  +
Sbjct: 747 QGFHFGRPMKLSDLKANYLPKSMPPLATS 775



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 7/121 (5%)

Query: 411 VLGSGDIVWDW----DIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFR 465
           +    D + D+    D     V     IA   G +    + G   +          D F 
Sbjct: 50  LQSIADDIADYIYLKDSNSRFVFANAIIARDFGYSSPAELFGKTDH--DVFSNEVADGFL 107

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                 +     ++ YE  V+  +  + W+     P+    G I+  +G+A DITE+KK 
Sbjct: 108 NDEREILSTGEAKVDYEEFVKYENGIYRWLSTSKFPLKTPEGKIVGILGLARDITERKKL 167

Query: 526 L 526
            
Sbjct: 168 E 168


>gi|118589781|ref|ZP_01547186.1| hypothetical protein SIAM614_05055 [Stappia aggregata IAM 12614]
 gi|118437867|gb|EAV44503.1| hypothetical protein SIAM614_05055 [Stappia aggregata IAM 12614]
          Length = 692

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 142/585 (24%), Positives = 261/585 (44%), Gaps = 21/585 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +V+  I +    +  +       +       R + A++ +  ++  +    + +      
Sbjct: 120 VVMSGIRLNDGRMALLCEGRPHHEQQPETL-RSAEALMHTTVMISLFSEDGNPLYRNTAA 178

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
                 AS  +   + +     H  D+   R ++         +   E  V   D    W
Sbjct: 179 RA----ASTDLECTLWD-----HFIDKALARKVMGVLSEKATTKFVAE--VLTCDG-LRW 226

Query: 495 MIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             I IR   ++  G    ++    D+TE  ++ E     A  D LTG+ NR    +RL  
Sbjct: 227 HEITIRRCHDAVTGKPA-FLLSEIDVTELHQTKERAQYLASHDALTGLSNRTYLKERLLQ 285

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +   +  +D L  T+ ++D+D +K +ND LG A GD +L  +  R+ EL    DI+ARL 
Sbjct: 286 VRQTAQEND-LIATLYLVDLDDFKMVNDTLGHAAGDHLLQLVASRLKELAGNNDIVARLG 344

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I  +S   S +   F  A+ ++ A P  +  +   V  SIG+  +        E+
Sbjct: 345 GDEFLICHLSSPESPRPDWFGQALLQAFATPQMIEGKPRHVGLSIGYVHYPMDGSDIDEL 404

Query: 674 LKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +++A+LA+Y AK   +         +   R   + +K+DL  A+  +E  L Y PI    
Sbjct: 405 MRHADLALYQAKSERKNKCVRYKEFMRKIRDKHLSLKKDLERAIRANEFLLYYQPIACTR 464

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            + IVG EAL++W HP+ G +S  +F+ +AEE  +I  I  ++   +A        +   
Sbjct: 465 SQRIVGAEALLRWQHPERGLVSPDDFVPVAEETGLINEIGTWVSRNVADMQSRL--KLLD 522

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++ K L D +    M+ L  +T  + + I L  +ESV++G+   +   L +L
Sbjct: 523 VSVPLSMNVSPKQLSDPKFLSRMENLPKETACNANEISLEITESVLLGDIPHAYETLMKL 582

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           +  G  + +DDFGT  S L+YL   P D +K +   M        AI+R I+ +A  ++ 
Sbjct: 583 KAAGYRIVIDDFGTGYSNLAYLHNYPIDGIKIDRMFMNDIATGG-AIVRLILSLATALDA 641

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           T++A+ +        L+  GC+  Q    + P+     + +L+ +
Sbjct: 642 TVVAEGVETVEQRSWLSENGCNRFQGFLYSKPVPEEQFVDMLQAQ 686


>gi|229114146|ref|ZP_04243567.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
 gi|228669166|gb|EEL24587.1| Sensory box/GGDEF [Bacillus cereus Rock1-3]
          Length = 689

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 115/529 (21%), Positives = 240/529 (45%), Gaps = 16/529 (3%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               P    I G     ++                +F+ I    +  R  ++  + +   
Sbjct: 170 TYANPATYEIFGYRYEELNNNFIFNFII--KEYEKDFQIIFKEALQGRAKQIVSK-KYVH 226

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            +    ++ +R  P+   NG+I+    +  D+T Q  +       A+ D LTG+ NR S 
Sbjct: 227 KEGYELYISLRTIPII-VNGEIVGVYIVTRDVTRQVLNEMKTEYLAYYDQLTGLMNRISC 285

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            ++L   L     ++N    ++ +D+D++  IND  G   GD VL  +T  +  L     
Sbjct: 286 TNKLNEFL-----NENKELALVFMDLDEFHLINDTFGHKEGDKVLQKVTECLSNLEIEGM 340

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            L R   ++F +++ +      + + A  + + I+    + E ++ ++ASIG     +  
Sbjct: 341 HLFREHDDQFVMLIENIT-KEYVEEVAKNILEKISEHFVIEEEDVYLSASIGIVMAPTDG 399

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYH 725
                + +  + A+  AK +G  H   +       R  R +++  L  A+E +E +L Y 
Sbjct: 400 ADEKILFQRVDAALEKAKEKGKGHYHFYCKGLDCEREKRFVMENQLHRAIEKNEFFLYYQ 459

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + +  ++I  +EALI+W++ + G +  ++F+ +AE    I  ++ ++++++ + I  W
Sbjct: 460 PQVNIETKKIASMEALIRWENKELGFVPPNQFIPLAERTGFIIKLDEWVVDQVCQQIREW 519

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            ++     + I +NI+++      L E +   ++K       + +  +E  ++ + + S+
Sbjct: 520 LNKGYEV-VPIAVNISARHFRSITLIEMITRALNKYNVPAHLLAIEVTEGALI-HKDISK 577

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            +L +L++  + + LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II
Sbjct: 578 RVLLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIHVDERDTNITAAII 637

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +A  +E  +IA+ +     I+ L     + +Q  + + PL    +  +
Sbjct: 638 HLAHTLELNVIAEGVEKAEQIQFLKEKNVEIVQGYYYSRPLSKYDVENM 686


>gi|330969773|gb|EGH69839.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 972

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 233/440 (52%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + +   A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSAPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++  S  +   I   A  + +
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIGENSVVARLGGDEFSIVVTHSVYSESLIKSLATHVVE 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  ++I V+AS+G A++      +  +LKNA+ AMY AK  G N+ + +    
Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYQAKKSGRNNFKFYNARM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+E  E  L + P + L D  I GLEAL++W+HP+ G +S ++F
Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++ ++   +  W +      + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKRWEENHIRL-VPIAINLSVRQLQVKGLAETVKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+  +    ++K 
Sbjct: 939 QGYLFSKPVISDECAAMIKS 958



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 26/289 (8%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
            +  +SF    + A +  + + + +    + +I   + G+     L     L        
Sbjct: 139 GVMRLSFNAERIAAELYSLVIQATLFAGFFLLISLMLMGFMIKRSLAHLGKLHSYEAEIA 198

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             A+       ++       +   +  +  T        G   + + +   +   A+   
Sbjct: 199 SGAVA---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEV 255

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF--- 471
             IV +               T             ++W   +     D   T + S    
Sbjct: 256 S-IVCEVSASGRITYVNERFVT-----------SSQHWRAELLELTIDEVWTGMSSANEP 303

Query: 472 --VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                       E R+     +  W    + P+ +  G + +YI I  DIT++K+    I
Sbjct: 304 WLWAPENKVWNGEVRLSGRTGKEAWHQRTVIPILDDLGGVEKYICIDIDITDRKEFEVAI 363

Query: 530 LCNAFQDNLTGIPNRQSFLDR----L--TTILDLSATDDNLRPTVMVID 572
           L N+ + NL  +  +Q+  +     L     L  +      +  ++V+D
Sbjct: 364 LDNSRRQNLIALFGQQALTEENVSVLGERAALTAAQGLKLSKAALLVVD 412


>gi|15596058|ref|NP_249552.1| hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
 gi|9946759|gb|AAG04250.1|AE004521_1 hypothetical protein PA0861 [Pseudomonas aeruginosa PAO1]
          Length = 818

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/586 (20%), Positives = 240/586 (40%), Gaps = 15/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+     +I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 333 SSVPVTLVGAPIHRGA-EITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I  +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796


>gi|86355809|ref|YP_467701.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86279911|gb|ABC88974.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 795

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 139/747 (18%), Positives = 273/747 (36%), Gaps = 46/747 (6%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271
             R  + I   A A+    + +     L+    +      +        LS +      +
Sbjct: 43  AGRRKLWIGAAAFAFGTGVWATHFIAMLAYDGGM-PISYQLGLTALSFLLSVAGSWAAIV 101

Query: 272 YLHWNRWHAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIY 328
               +R   +   I    I  + I                 +    +    +     +  
Sbjct: 102 VASESR--GRFSRIRGGVIMALGIASMHLTGMQAIETQAVVVYNPYMTLSAVLAGALLSS 159

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
                Y          +L       L +     +    I      G  +  +++  +++ 
Sbjct: 160 AAF--YAFFQWRGLGRLLTSSVTFVLAICALHFISMASITLVPDPGKEVRAMVLDTSLLA 217

Query: 389 HVLATGYFSQGI--------FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            ++     +  +         S           S + +         +        + G 
Sbjct: 218 AIVVVAATALILTVIAVVFIESHLTDLRGLANASQEGLLILR-EGRIIDANERFQVLSGW 276

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               + G   +                L    G  R     E  +  +  +   + +   
Sbjct: 277 KLADLVGKAPS--------------AALTVIQGQNRP---GETLLTTSSGKEIAVDVNTS 319

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     +    +    D+TE++ + E I   A  D LTG+PNR  F  R+   L ++  
Sbjct: 320 RIVYRGHNCD--VLAVRDLTERRLAEEMIEHLAHHDVLTGLPNRSLFDTRIRQALQMAER 377

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             N    +  ID+D++K +ND+ G A GD +L  +   +  +    D +ARL G+ F II
Sbjct: 378 -KNSEVALFYIDLDRFKSVNDIFGHAEGDRILCKVASILRRVADESDTIARLGGDEFAII 436

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +          A A+    A  ++       V  S+G A + +    + E+  NA++A
Sbjct: 437 QPAGQQPAAAQKLAAAILDEFAAEMDTARDPTAVGVSLGIALYPADGRETDEICNNADIA 496

Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y  KH G      F          R  I+ +L  A+  +++++ Y PI   +  E+ G 
Sbjct: 497 LYRVKHGGRGKACFFDAEMDEATRARRQIESELRHAITRNQIHVSYQPIYGALSGEVSGY 556

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+ P  G      F+ IAEE   I  +  ++L     +   W       P+ I +
Sbjct: 557 EALMRWNRPGHGISEPDVFIPIAEESGSIVQLGEWVLRDACTEAARWP-----HPLTIAV 611

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++    +   LCE ++A++ +T  +P R+++  +E+ ++ + +R    L RLR +G+ +
Sbjct: 612 NVSPVQFMLPNLCERIEAILEETGLAPDRLEIEITEAALIRDRDRVMATLQRLRSLGVHI 671

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LS L   PFD +K + S            +I+R+II +  ++   ++ +
Sbjct: 672 VMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAASRSIVRAIIGLGHSLGMPVVTE 731

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASP 943
            +  E   + +   GC  +Q   +  P
Sbjct: 732 GVETETQRQIVVEEGCAQVQGFLLGKP 758


>gi|229591727|ref|YP_002873846.1| putative signaling-related membrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229363593|emb|CAY50896.1| putative signalling-related membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 820

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/604 (20%), Positives = 237/604 (39%), Gaps = 21/604 (3%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQ---HVLATGYFSQGIFSDGERQSLAVLGS 414
                   I+   L+  L   + LI   +++    +     F+  +  + ER  + +   
Sbjct: 195 ALGEGSRMILGLLLITNLATALGLIVLALLRTHKLLAQRHAFADALQQEKERAQITLESI 254

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIH----INDRDNFRTILD 469
           GD V   D+        P    +    S    G P+      +      +       I+ 
Sbjct: 255 GDGVITTDVDGAISYMNPAAEALTHWNSAQAQGLPLAALFNLLDDNAQPDGFTLIEHIVK 314

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +       +   R+   D     + +   P+  S G +   + + +D+T++++ +  +
Sbjct: 315 GQLSGGSEHSKTIQRL---DGSTVSVTLVGAPIR-SGGKVTGAVLVLHDMTQERQYIANL 370

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR+ F  RL  +L  +A     R  +M +D+D++K +ND  G A GD
Sbjct: 371 SWQATHDALTGLANRREFEFRLEQVLHPAAQQYGGRHALMFLDLDQFKLVNDTCGHAAGD 430

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L  +   +   L+  D LARL G+ FGI+L +   ++             ++      
Sbjct: 431 ELLRHICALLQSDLREGDTLARLGGDEFGILLENCPAAVAEKIAESLRHTVQSLHFVWKG 490

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRV 705
           R    T SIG      +  T    L+ A++A Y AK +G N V+ +         R   +
Sbjct: 491 RPFMTTVSIGLVHLGHTPTTLETSLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEM 550

Query: 706 MIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              + L +A+E +   L    I      D     +E L++        I    F+  AE 
Sbjct: 551 AWVQRLHMALEENRFCLYAQEISPLGQTDGGDGHIEILLRLHDEAGRIILPDSFIPAAER 610

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTL 822
             ++ +++ +++E + + I     +    P+ +  IN++   + D++    ++       
Sbjct: 611 YGLMTSLDRWVVENVFKIIARCLHERPGRPMAMCAINLSGITIGDDDFLGFLREKFHTYA 670

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I    +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K
Sbjct: 671 IPPGMICFEITETSAIANLGSAIRFINELKALGCQFSLDDFCAGMSSFAYLKHLPVDFLK 730

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +          A++  I  +   +    IA+ +      + L  +G DY Q   +
Sbjct: 731 IDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLI 790

Query: 941 ASPL 944
             P 
Sbjct: 791 ERPQ 794


>gi|114321598|ref|YP_743281.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227992|gb|ABI57791.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 802

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 220/448 (49%), Gaps = 8/448 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +   A  D LT +PNR     RL   +  + T    R  V+ +D+D++K IN
Sbjct: 358 QLRQHQARLTHLANHDPLTDLPNRLLLTTRLEQAVARA-TGSGQRVAVLFLDLDRFKNIN 416

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG AVGDD+L  L  R+   +   + +ARL G+ F ++L   ++   +   A  + + 
Sbjct: 417 DSLGHAVGDDLLRILAERLRSQV-EANTVARLGGDEFIVLLDGISDLELVDQQARELLEL 475

Query: 641 IAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +A   ++   R + V  SIG + +  +   +SE++  A+ AMY AK  G N    +  S 
Sbjct: 476 VAESFSVGGWRSLQVGGSIGISLFPDNAQDASELITQADAAMYLAKAEGRNTYRYYNQSL 535

Query: 700 FRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +    ++ +  L  A+E   L + Y P + +    + G+EAL++W  P+ G I    F
Sbjct: 536 TAAASERLETETRLRRALELDHLEVFYQPQLDITTGALTGVEALVRWRDPEQGLIPPDRF 595

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  +   +LER    + +W D+  +P + + +N+++  + D  LC  ++  
Sbjct: 596 IPVAEETGLIDRLGQQVLERACLQVAAW-DRDGLPALDVAVNLSAHQIGDPRLCAKIRHA 654

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + ++  +P R+ L  +ES +M   E +   L  L+ +G+ + +DDFGT  S L+YL    
Sbjct: 655 LERSGLAPRRLVLEITESTLMTQAEGALGTLAGLKGLGVQVAIDDFGTGYSSLAYLKRFA 714

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           + ++I+ MA N+   ++A+ +  +  +  LT +GCD  
Sbjct: 715 IDWLKVDRCFVQDLPEDRNDAELTQTIVYMAHNLGLRVLAEGVETQAQLDFLTHLGCDGW 774

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q    + PL    ++  L+ R  L +  
Sbjct: 775 QGFLCSPPLPPQELVARLESREGLRRRA 802


>gi|87122911|ref|ZP_01078777.1| sensory box/GGDEF family protein [Marinomonas sp. MED121]
 gi|86161811|gb|EAQ63110.1| sensory box/GGDEF family protein [Marinomonas sp. MED121]
          Length = 806

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 125/563 (22%), Positives = 250/563 (44%), Gaps = 20/563 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +          +  +GD ++  D+             ++G+    +       L  +H 
Sbjct: 238 ALERSDAHSKAIISQAGDAIFLSDMEGQITLVNKAAVKMVGIDEQELTHSN---LRSLHA 294

Query: 459 NDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              + + +     V       L  E   R +      +   IR +     + +  + +A 
Sbjct: 295 E--ETWVSFYQDLVKQPLDTPLTIETLYRHSSGAVTPIE--IRLIKYVLQESIEVLILAR 350

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+ +K++ + I   A+ D+LT +PNR   ++RL + +++S  +  ++  V+ +D+D++K
Sbjct: 351 DISARKEAEDKINHLAYFDSLTHLPNRHWIMERLESSMEIS-RERKVKGAVLFLDLDRFK 409

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIAD 632
            IND LG  VGD +L  +      L +    +ARL G+ F  +             K+A 
Sbjct: 410 NINDSLGHDVGDLLLQVVANDFKVLAEGDICVARLGGDEFVFLFPFLEGDLDYINEKVAF 469

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           FA  + +S      +   E+ ++ SIG   +   +     +LK A+ A+Y AK  G N  
Sbjct: 470 FAQQIVQSFNKSKFVGSHEMHISVSIGITLFDGFEENVGVLLKQADTALYKAKDAGRNTY 529

Query: 693 ESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             ++        DR+ +++ L  A+ ++E  L Y P   +   E++G EALI+W     G
Sbjct: 530 RFYKAEMQVLTDDRLKLEKALHRAITHNEFELYYQPQNNVK-GELLGAEALIRWHDGDNG 588

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNE 809
            I  ++F+ +AEE+ +I  +  +++E     +  W  +    P   + IN++       E
Sbjct: 589 FIPPAQFIPLAEEIGLIIELGEWVMENAFYQLSQWLKRDLWKPDWTLSINVSPIQFQHPE 648

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               ++ L+ K     + I +  +E++++ + + SRL +  +R +G+ L++DDFGT  S 
Sbjct: 649 FLINLERLLLKYNIPATLIDIEITENMLLTDLQASRLKMEHIRSLGMKLSIDDFGTGYSS 708

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P + +K + S +          AI+ ++I M+  ++  ++A+ +  +  +  L
Sbjct: 709 LQYLKTLPIERLKIDQSFVRDLLIDSGDEAIVGAVIAMSGALDIEVLAEGVETQEHLLRL 768

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
             MGC   Q      P+      
Sbjct: 769 EEMGCLNYQGYLFGRPVSATQFT 791


>gi|107100318|ref|ZP_01364236.1| hypothetical protein PaerPA_01001343 [Pseudomonas aeruginosa PACS2]
 gi|218893172|ref|YP_002442041.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58]
 gi|218773400|emb|CAW29212.1| hypothetical protein PLES_44571 [Pseudomonas aeruginosa LESB58]
          Length = 818

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/586 (20%), Positives = 240/586 (40%), Gaps = 15/586 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              ++++L      Q ++        + ++ ER  + +   GD V   D         P 
Sbjct: 214 TASVLILLAFLRTRQQLMQRQEVENALDAERERAQITLASIGDGVITADTQGGISYLNPA 273

Query: 434 IATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADN 490
              +         G P+ +    +  + R+    +++  +      GR   +  +R  D 
Sbjct: 274 AEQMTNWTLDKARGLPLASLFRIVDESSREEGMLLIEQILSGEIDGGREHSKLVLRH-DG 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +   P+     +I   + + +D+T +++ +  +   A  D LTG+ NR+ F  R
Sbjct: 333 SSVPVTLVGAPIHRGA-EITGVVLVLHDMTRERQYMARLSWQATHDALTGLTNRREFEYR 391

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L+    +   R  +M +D+D++K +ND  G A GD++L  +   + + L+  D LA
Sbjct: 392 LQIALERLERNSG-RHALMFLDLDQFKLVNDTCGHAAGDELLRQVCTLLQQGLREGDTLA 450

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FGI+L +      +       +    +      +    T S+G         T 
Sbjct: 451 RLGGDEFGILLENCPAEKAVEIADHLRKTIQDLHFTWSGQPFNCTVSVGLVHLLPGISTL 510

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
            E L++A++A Y AK +G N V+ F         R   +   + + LA+E     L   P
Sbjct: 511 EEALRSADMACYMAKEKGRNRVQVFHQDDVELSMRFGEMTWVQRIHLALEEDRFSLYAQP 570

Query: 727 IIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           I+ L +     + +E L++        +    F+  AE   ++  I+ +++E   R ++ 
Sbjct: 571 IVPLGEGAEEGLHVELLLRLRDEGGRLVPPLSFIPAAERYGLMTLIDRWVVENAFRTLVE 630

Query: 785 WRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   PI    IN++   + D    + +  L ++    P  I    +E+V + N   
Sbjct: 631 RAQDPRAEPIGTCAINLSGATIGDESFLQFLTELFARYRIPPQTICFEVTETVAVANLAS 690

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +  L+  G   +LDDF    S   YL ++P D +K +GS +          A+++ 
Sbjct: 691 AIRFINELKDTGCRFSLDDFCAGMSSFIYLKHLPVDYLKIDGSFVKDMLEDPIDRAMVQV 750

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I  +   +    IA+ +     ++ L  +G DY Q   + +PL F+
Sbjct: 751 INHIGHVMGKRTIAEFVETVEVMEALREIGIDYAQGLAIGAPLPFS 796


>gi|82701462|ref|YP_411028.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82409527|gb|ABB73636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosospira multiformis ATCC 25196]
          Length = 951

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 119/574 (20%), Positives = 238/574 (41%), Gaps = 13/574 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I   + + +       + +F + E   + +   GD V   D         P    + G +
Sbjct: 377 IQTQLRRDLTEREIAEKALFEEKELLRVTLSCIGDAVITTDTEGSVTYLNPVAEAMAGCS 436

Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRI 499
           S    G P+++    IH    +   +  +  +  +    L     +   D Q   +    
Sbjct: 437 SDDAKGLPLQDVFQIIHAETNELASSPAERVLRNKETVSLNSHALLIRRDGQTFPIEDSA 496

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ + NG I+  + +  D++  +K    +   A  D LTG+ NR  F  RL  +L+   
Sbjct: 497 APIRDQNGSIIGVVLVFRDVSHAQKMAMEMRYQATHDALTGLINRHEFERRLKQVLERDK 556

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  T++ +D+D++K +ND  G   GD++L  LT  +   L+  D LARL G+ FG+
Sbjct: 557 --GADEHTLLYLDLDQFKIVNDTCGHLAGDELLKQLTSLLQAKLRKDDTLARLGGDEFGL 614

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L             +  +          ER  ++  SIG A+++  + T S++L+ A+ 
Sbjct: 615 LLERCPRGSAFRVAEVLRQTVQEFRFVWEERIFSLGISIGLATFSGGEQTFSDVLRMADT 674

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLM-DEE 734
           A + AK +G N V+ +       ++        E L  A++     L    I+ L     
Sbjct: 675 ACFLAKDKGRNRVQLYASDDKNLEKRRGEMGWVERLHKALDKQRFVLYSQKILPLSAPSS 734

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
               E L++        +    F+  AE   ++  ++ +++        S   +      
Sbjct: 735 TSHYEILLRMKGENGELVPPMAFIPAAERYGLMPQLDRWVITNAFAQYASHPSRGIKDTC 794

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
              IN++   + D  L + +     ++   P+ I    +E+V + N  ++  L+ +L+++
Sbjct: 795 T--INLSGASICDEHLYDFVVDQFKQSQIDPAGICFEITETVAIANLTQAATLIRKLKEL 852

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G   +LDDFG+  S  +YL ++  D +K +G+ + G        A++ +I  +   ++  
Sbjct: 853 GCRFSLDDFGSGMSSFTYLKHLLVDYLKIDGAFIKGMLSDPIDHAMVEAINHIGHVMKIQ 912

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            IA+ +  E  ++ L ++G DY Q   +  P   
Sbjct: 913 TIAEWVEEESFLEALRKIGVDYAQGYAIEEPRPA 946



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 9/141 (6%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              ++    +  + D +   +   + V        +       + G     L  I    R
Sbjct: 252 KAEQKFRGLLEAAPDAIVIVNRNGEIVLVNSQTEKLFDYQREQLLGKKMEML--IPPRYR 309

Query: 462 DN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                FR         R   +  E      D     + I + P+    G  +       D
Sbjct: 310 SKHPGFREDFFRAPRTRPMGIGLELYGLRRDGTEFPVEISLSPLETEEG--ILVSSAIRD 367

Query: 519 ITEQKKSLEGILCNAFQDNLT 539
           ITE+K++ E I     +D LT
Sbjct: 368 ITERKRTKE-IQTQLRRD-LT 386



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 11/127 (8%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFR 465
           +    D +   +     V        + G ++  + G     L       +H  +R    
Sbjct: 140 LDSIPDGIVIVNSTGRIVLVNTQTEKLFGYSAHELCGQPVEMLLPPRKRGLHSGER---- 195

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               +    R     +E      D     + I + P+    G     I    DI+++KK+
Sbjct: 196 AAYFTHPHSRTLVADWELYGFRKDGTEFPVEISLSPIETDEGRFS--ISAIRDISDRKKA 253

Query: 526 LEGILCN 532
            +     
Sbjct: 254 EQKFRGL 260



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 28/120 (23%), Gaps = 3/120 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            L +                V       +I G             L     + R      
Sbjct: 12  KLVLDEMPGGAIVTTGDGVVVYWNKGAQSIFGYTVAEALQRRLTELVG-APDHRPKINQS 70

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L +   +       E   R  D    ++ +  + +S         +  + +IT  K   +
Sbjct: 71  LRN--THETRASVDEILCRKKDGSLLYVSMSCKVLSQDQRQDGYVLITSTNITHIKALRD 128


>gi|289675549|ref|ZP_06496439.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 832

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 232/440 (52%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   +   A  D+LT +PNR    + L  I+  + +  +   +V+ ID+D++K +N
Sbjct: 381 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 439

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  +  
Sbjct: 440 DTMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHKVYSESLIKSLATQVVD 499

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  ++I V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +    
Sbjct: 500 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDARM 559

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+E  E  L + P + L+D  I GLEAL++W+HP+ G IS ++F
Sbjct: 560 NESLTRRLQTETLLRGALERDEFILHFQPKVSLVDGRISGLEALLRWNHPEQGMISPADF 619

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++ ++   + SW        + I IN++ + L    L E ++ +
Sbjct: 620 IPILEDTGLIIPVGVWVIRKVCETLKSWEKNNIRL-VPIAINLSVRQLQVKGLAETVKHI 678

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 679 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 738

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 739 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 798

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+       ++K 
Sbjct: 799 QGYLFSKPVISEECAAMIKS 818



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 14/242 (5%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           +SF    + A +  + + + +    + +I   + G+     L     L          A+
Sbjct: 3   LSFNAERIAAELYSLVIQATLFAGFFLLISLTLMGFMIKRSLAHLGKLHSYEAEIASGAV 62

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
                  ++       +   +  +  T        G   + + +   +   A+     IV
Sbjct: 63  A---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IV 118

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRR 476
            +               T    +   +          + I++     +  +         
Sbjct: 119 CEVSASGRITYVNERFVTSSQHSRAELLE--------LTIDEVWTGMSSANESWQWAPEN 170

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                E R+     +  W    + P+ +  G + +YI I  DIT++K+    IL NA + 
Sbjct: 171 EVWNGEVRLAGRTGKVAWHRRTVIPILDDLGGVEKYICIDIDITDRKEFEVAILDNARRQ 230

Query: 537 NL 538
           NL
Sbjct: 231 NL 232


>gi|254563359|ref|YP_003070454.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270637|emb|CAX26641.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL)
           precursor with PAS sensor [Methylobacterium extorquens
           DM4]
          Length = 567

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/479 (25%), Positives = 213/479 (44%), Gaps = 31/479 (6%)

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            RVR        +   + P+         +     D+TEQ          A Q+ LTG+ 
Sbjct: 83  VRVRLTLGGDRRVEAALAPL-----STGGFALTFEDVTEQ----LRGAALARQEPLTGLC 133

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DRL   L  +A        V+++D+D++K +ND LG  VGD +L  +  R+   
Sbjct: 134 NRVGLHDRLDAALIEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192

Query: 603 LKFPDILARLSGNRFGII------------LISENNSLKIADFAIAMRKSIAMPINLLER 650
            +  D++ARL G+ F I+                         A  +   +     +   
Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPQLGTHTGVEQPHAAEALARRLVDLVGRTYVVDGH 252

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            + V  S+G A   +    + ++LK+A+LA+Y AK  G      F  +     +    ++
Sbjct: 253 MLNVGVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLE 312

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+   +  L + P I+L   ++ G EAL++W+HP+ G +S + F+ +AEE+ +I 
Sbjct: 313 IDLRRAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIV 372

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R+   W       P  I +N++        L E +  ++++T   P+R+
Sbjct: 373 GIGEWVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTGLDPARL 427

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E  ++ N +    +L  LR +G+ +++DDFGT  S LSYL   PFD +K + S +
Sbjct: 428 ELEITEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFV 487

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            G        AI+R+I  +  ++     A+ +     +  +   GC  +Q      P+ 
Sbjct: 488 RGMEGNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPMP 546


>gi|118593438|ref|ZP_01550818.1| putative kinase/esterase [Stappia aggregata IAM 12614]
 gi|118433917|gb|EAV40575.1| putative kinase/esterase [Stappia aggregata IAM 12614]
          Length = 759

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 127/452 (28%), Positives = 224/452 (49%), Gaps = 12/452 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++      + +T++    E    +A   D L+G+PNR  F   LT  L+ SA  +     
Sbjct: 293 VIAVTIFTHQMTKRLAHSEARAVHASRHDALSGLPNRARFHTLLTETLEESAA-EGTNTA 351

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG + GD V+ ++ +R+  ++    I+AR+SG+ F +++ +  + 
Sbjct: 352 VVYIDLDHFKDINDTLGHSAGDKVITAVAQRLHRVIPDTGIVARISGDEFAMVIRNCEDD 411

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           + +      ++  I  PI +  RE+  + S+G A          E+L+ A++A+Y AK  
Sbjct: 412 VWLEYILDQVQDEIGRPIMIGRRELHASLSMGAAVAPRDGNDPDELLRKADIALYDAKAN 471

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F  +     +    +  +L LA++N EL L Y P      + IV +EAL +W 
Sbjct: 472 GRNRRSFFEPNMEHHVQSKDRLSRELRLALKNDELDLAYQPQSDTSAKRIVSVEALARWT 531

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 IS ++F+ +AEE  +I  + +++L +       W      P I + +N++    
Sbjct: 532 KEDGTVISPAQFIPVAEETGLINDLGIWVLNKACAKAHEW------PGITVSVNVSPNQF 585

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                 E + A+++     P R+++  +ESV  G  +     L RL+ +G+ + LDDFG+
Sbjct: 586 KHPRFVEKVMAILATNNLPPQRLEIEVTESVFAGRNDSVLKALRRLKNLGVKVALDDFGS 645

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFDT+K +   ++         AIL SII + K +  TI+A+ I  +  
Sbjct: 646 GYSSLSYLRRFPFDTLKIDRDFVSDMNGNAEAEAILVSIIQLGKALGMTIVAEGIETQEQ 705

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ L    C+ +Q  +++ PL   ++ K L E
Sbjct: 706 IRFLQAHDCNRMQGFYISRPLTDTALTKFLDE 737


>gi|86357036|ref|YP_468928.1| putative signal-transducer protein [Rhizobium etli CFN 42]
 gi|86281138|gb|ABC90201.1| putative signal-transducer protein [Rhizobium etli CFN 42]
          Length = 634

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 147/574 (25%), Positives = 261/574 (45%), Gaps = 33/574 (5%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRN 451
              +Q          + +      +  +D  +           + GL    +     I  
Sbjct: 63  SALNQAFDGQKRLFEIVLNNLPLGLSVFDAGQRLTLYNLRFPQLFGLTPEDVAAGATIAE 122

Query: 452 WLPYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN---- 504
            +  +  N+R      R      +            +R  +    W++   R + +    
Sbjct: 123 LIGKMRGNERTASKPVRQTARPSLAKTGSSS-----IRRRE----WLMHDGRIIQSVVTI 173

Query: 505 -SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            S+G     I I  DITE +K+ E I   A  D LTG+PNR  F +++ T L  +    +
Sbjct: 174 LSDGSS---IAIHADITEDRKAAERISYLAHHDPLTGLPNRMYFREQVDTRL--AQRKPH 228

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ +++D++K IN+ +G++VGD +L  +  RI       +ILARL  + F I+   
Sbjct: 229 EQIALVHLNLDRFKSINNTIGVSVGDKILQQVAERIRASAGSENILARLGSDEFAILQTG 288

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +     +   A  +R  ++ P    E+++T++ S+G A    +   +  +LKNA +A+ H
Sbjct: 289 KQQPRTVTALADQIRSELSEPFLNGEKQVTLSVSMGIAIAPENGGETDILLKNAGVALSH 348

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F        ++   ++ DL  AVEN E +L Y P+  L +  I G EAL
Sbjct: 349 AKADGRKRERFFTGEMEAQMQLRHALEADLRAAVENEEFHLHYQPLYDLAERRICGFEAL 408

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+HP  G +   +F+ +AEE+ +I  I  ++L R  RD   W +      I + +N++
Sbjct: 409 IRWNHPVRGRVPPMDFIPLAEEVGLIVDIGRWVLRRACRDAAQWPE-----NIKVAVNVS 463

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +     ++L + +   ++    SPSR++L  +ESV+M N      +L  L+  GI +++D
Sbjct: 464 AIQFSGSDLTQDVSEALAAAGLSPSRLELEITESVLMENLNEVLPILHALKDRGIHVSMD 523

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   PFD +K + S +      ++  AI+R+II +   +   +  + + 
Sbjct: 524 DFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAYAIMRAIILLGDALGMRVTVEGVE 583

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +  L    CD IQ  H++ P     +  LL
Sbjct: 584 TAAQLALLECEECDEIQGYHISPPRPVRDVPHLL 617


>gi|302189319|ref|ZP_07265992.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 972

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/440 (27%), Positives = 236/440 (53%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + +   A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLSNYLREIISRKTSSPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  +  
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDENSVVARLGGDEFSIVVTHPVYSESLIKSLAAHVVD 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 640 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYNATM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+E +E  L + P + L+D +I GLEAL++W+HP+ G +S ++F
Sbjct: 700 NESLTKRLQTETLLRGALERNEFILHFQPKVSLVDGKISGLEALLRWNHPEQGMVSPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++  +   + SW +      + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGVWVIRTVCETLKSWEENNIRL-VPIAINLSVRQLQVKGLAETVKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLELLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+  +    ++K 
Sbjct: 939 QGYLFSKPVISDECAAMVKA 958



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLMLMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFS--------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    +              + + +   +   A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQF 492
            T    +   +          + I++     +  +              E R+     + 
Sbjct: 275 VTSSQHSRAELLE--------LTIDEVWTGMSSANEPWQWAPENEVWNGEVRLSGRTGKV 326

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    + P+ +  G + +YI I  DIT++K+    IL NA + NL  +  +Q+  +   
Sbjct: 327 AWHRRTVIPILDDLGCVEKYICIDIDITDRKEFEVAILDNARRQNLIALFGQQALTEENV 386

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +   +  +  ++V+D
Sbjct: 387 SALGELAALTAAQGLNLSKAALLVVD 412


>gi|238916473|ref|YP_002929990.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750]
 gi|238871833|gb|ACR71543.1| histidine ammonia-lyase [Eubacterium eligens ATCC 27750]
          Length = 723

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 130/576 (22%), Positives = 249/576 (43%), Gaps = 32/576 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLAS 442
             +I  +  +   +  + S  +     +   G  +        + +      + +     
Sbjct: 163 AMIIHSIAQSKVINNSLISSYDVLQKILDNIGSGIIVCSKNSGNILFENDMASHVT---- 218

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIRP 501
                             R+  R  L+     +         +   + +   W  +R   
Sbjct: 219 ----------------EVRETIRECLEEVFQNKDISGHIGTPMERYNTESGLWFEVRFSE 262

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   +G  +  +  A DIT++KK+ + I   A  D LTG+ NR      L  ++  +   
Sbjct: 263 LKWIDGSDV-VVATAADITQKKKNQQKIEYQAHNDFLTGLYNRMKCEVDLRKVIRRTEKA 321

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             L+  V+ +D+D +K IND LG   GD +L  +   +  +        R+ G+ F II+
Sbjct: 322 -GLKGAVLFLDLDDFKHINDGLGHQYGDILLQQIAAGLTGIPGLRGHCYRMGGDEFVIII 380

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
             E    +++     ++     P  L+E E   T S+G A +  + +   E+ + A++AM
Sbjct: 381 EPEI-YNELSKIVTNIKTLFNKPWYLMETEYFCTMSMGIALFPDNSVDVHEITRMADVAM 439

Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVG 737
           Y AK  G N    +      S   R+ I+ ++  A+ N  +E  + Y P++ +  +    
Sbjct: 440 YEAKRSGKNGYAYYSSEVENSTAKRLDIENNMRQAISNEINEFVVFYQPVVNVNTQMCTS 499

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++WD    G +   EF+ +AE L +I +I  ++LE   R    W D    P  +I 
Sbjct: 500 CEALVRWDSKALGFMGPGEFIPLAEYLGLITSIGDYVLEEACRRCKIWND-NGHPDFYIN 558

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   LL  ++ E ++ ++ KT  +P  I L  +ES  + + +R   ++  L+K+G  
Sbjct: 559 VNLSVVQLLQKDVVENIKRILDKTGVNPKNIVLEITESFAINDMQRVMEIITGLKKLGPR 618

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S L+Y+  +P D +K + + +    E     A ++ I+ ++K I T I+ 
Sbjct: 619 IALDDFGTGYSSLNYIKQLPLDIIKVDKTFIDDIVEDDYAQAFVKLIVDLSKTIGTKIVV 678

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  +   + L  +G DYIQ  +   P+  N   +
Sbjct: 679 EGVEHKEQFELLKSLGVDYIQGYYFGKPVPANIFEE 714


>gi|189423749|ref|YP_001950926.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Geobacter
           lovleyi SZ]
 gi|189420008|gb|ACD94406.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Geobacter
           lovleyi SZ]
          Length = 651

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 218/442 (49%), Gaps = 5/442 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I      T  + +   I   AF D LTG+PNR      L   +  +  ++N +  + ++D
Sbjct: 177 IETIRLRTAHEHANARIHRLAFFDTLTGLPNRNHLAGLLADSIAAAKQNNN-QLALFLLD 235

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D  ++IN+  G   GD +LV + +++  L+    ++AR  G+ F II+  ++   K+ +
Sbjct: 236 LDYIREINETYGHETGDWILVQVAQKLCGLVDDSALVARFGGDDF-IIIYEQSTVHKVRN 294

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +I  P     R  +++ SIG A +     T +++L  A+LAM   K  GG + 
Sbjct: 295 LAKHILAAIKQPFLFDARSFSISGSIGIAFYPDDADTPTDLLSRADLAMSKVKGAGGGYC 354

Query: 693 -ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +S   + ++ + + L  A+    L+L Y P + L    +VG EAL++W  P  G 
Sbjct: 355 LYKRDMSHLLTRKLELVQRLECALAEGNLHLYYQPKVELYAGMMVGAEALLRWQDPVLGW 414

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S +EF+ +AE   ++  I  ++L+   + I SW+ +       I +N++++   D    
Sbjct: 415 VSPAEFIPVAEGRGLMPQIGEWVLKTACQHIKSWKSKGLNCRGKIAVNVSAQQFGDPYFL 474

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  ++ +T   PS I+L  +ES +M +PER   ++  LR +G S+ +DDFGT  S L+
Sbjct: 475 ERVARVLEETGVLPSNIELELTESCLMDDPERMSEIMKSLRGMGFSIAIDDFGTGYSSLA 534

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P DT+K + + +          AI+ +I+ +AK +    +A+ +  E     L +
Sbjct: 535 YLKRFPIDTLKIDQTFVKNMLDDNNDKAIISTILAIAKQMGLMTVAEGVETEEQRCALQK 594

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
           +GC   Q  +   P   +   +
Sbjct: 595 LGCVLAQGYYFCRPEPMDDFTE 616


>gi|317407292|gb|EFV87267.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Achromobacter xylosoxidans C54]
          Length = 665

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 143/619 (23%), Positives = 258/619 (41%), Gaps = 14/619 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            A  +  +  I   + I   L  D IQ  LVG  +      G         +    + + 
Sbjct: 50  QAQAIRALTGITASLRIDIVLYGDPIQLRLVGRKINPNEWAGTASAHSDTDSVA--RDLV 107

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                    V  +  ++   D                G     + G    +  ++   + 
Sbjct: 108 EGLSFAETVVSEANSVIVIVDQHGRVQRFNKVSEEYTGKREQDIVGR-SVFDMFMTREEA 166

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              R  +  F   R    + E  +        ++       S S    +  I    DITE
Sbjct: 167 AASRRNIAEFYK-RGQSYEVERLINTVKGPRLFLFRNKFVTSGSGEKRVYLICSGTDITE 225

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ E +   A  D LT +PNR +   RL T L      +  R  V+ +D+D +K+IND
Sbjct: 226 ERQAQERLRVLANTDVLTNLPNRHAITTRLKTALA---EGEGARGGVLFLDLDNFKRIND 282

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L S++  I   L     LARL G+ F ++L     + ++   A  + + +
Sbjct: 283 HYGHGFGDRLLKSVSVAISSCLAPGQTLARLGGDEF-LVLQEHAEAWQLEATAGRIIERL 341

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P      E+  + SIG A +         ++++A++AMY AK  G +    F+    R
Sbjct: 342 REPFRQELIEVYTSCSIGIAMYPEHGDDLDSVVRSADIAMYVAKEAGRHTYRVFQPEMDR 401

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +   V +  +L  A+    L L Y P +     E+ G+EAL++W  P+ G I  S F+ 
Sbjct: 402 RNADYVWLDTNLRKALAEGHLMLYYQPKLAGRSGEVDGVEALLRWRSPERGMICPSVFIP 461

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AEE  +I  + ++++   AR   +W+       + + IN++++ L D  +       + 
Sbjct: 462 YAEESGLISQLGVWVMREAARQAAAWKRDGLD--LRVAINMSARQLDDKGVVSEFMRAVG 519

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               +P  + +  +ES ++ +   +  L+ + R++G  + LDDFGT  S LS L  IP D
Sbjct: 520 DAGLAPCLLDIELTESCLIEDEVAAIELMKQFRQLGARVHLDDFGTGYSSLSQLARIPLD 579

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S + G  E     A+ R+I+ +A+ +E  +IA+ +  + +   L  +G D  Q 
Sbjct: 580 AIKLDASFVRGVNENPVSQALARAIVAVARTLELQVIAEGVETQEETAFLDTLGVDAKQG 639

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+    +   L +R
Sbjct: 640 YLYAKPMPAAELTTWLAQR 658


>gi|152965534|ref|YP_001361318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
 gi|151360051|gb|ABS03054.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Kineococcus radiotolerans SRS30216]
          Length = 768

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 131/585 (22%), Positives = 255/585 (43%), Gaps = 31/585 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + +  +R +     S       D+           A ++GL +  + G    
Sbjct: 179 EDERAQAALRAAEDRFATLAQSSPVPTIVSDVGARLSRVNDAFAELIGLPAEELCGT--A 236

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           WL ++  ++R      +   +   R  L  + R+R A  Q  W+ +R+ P     G    
Sbjct: 237 WLTHVVDDERSGVVEAVARVLSGERVTL--DTRLRNAAGQVRWVAVRLAPSRTP-GYGAG 293

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL--RPTVM 569
           +IG   D+T++      +   A  D LTG+PNR + L+RL  +L L            V+
Sbjct: 294 FIGTVEDVTDRLAREHRLAYQAQHDLLTGLPNRLALLERLADLLALPGEAPGPGTDVGVL 353

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K +ND LG   GD VLV + RR+   ++  D++AR  G+ F ++    ++   
Sbjct: 354 MVDLDDFKTVNDGLGPEAGDAVLVEIARRLAGTVRSGDVVARPGGDEFVLVCAGLDDLGA 413

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG- 688
           +   A  +  ++  P+ +    + ++ASIG      S     E++++A +A++ AK  G 
Sbjct: 414 VEATARRVLDAVLAPVEVNGLRLRLSASIGVVLLDGSSCGPEEVVRDAGIAVHEAKAAGG 473

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDH 746
               +    V       + +  DL  A+    + + Y PI+R     +++ LEAL +W H
Sbjct: 474 GRWTLLDEDVRHRARRALRLVADLREALSRGAVDVHYQPIVRPGRPAQVLSLEALCRWTH 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-----ANMPPIFILINIA 801
           P+ G I    F+ +AE   ++ A++  +L    RD+ +WR         + P  + +N++
Sbjct: 534 PELGAIPPDTFIELAERANLVPALDAHVLAVACRDLATWRAAHAAGDLPLTPTHVAVNVS 593

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L       G++  ++      S + L  +E+ +  +    R +L  LR+ G  + +D
Sbjct: 594 AVSLAAEGFAAGVRRTVAGAGLQLSDLCLEVTETALASDLRACRTVLEELRRDGARVAID 653

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII------------PMAKNI 909
           DFGT  S L+YL  +P D +K + S +          +  +              +A+ +
Sbjct: 654 DFGTGYSSLAYLKDLPVDHLKVDRSFVRDL----RTAVDGVQGGPARAVAAAVVSLARTL 709

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+A+ +        +  +GC+ +Q    + PL   ++ +LL+
Sbjct: 710 GLGIVAEGVETLEQDAVVRDLGCEAVQGWLYSRPLPREALAELLR 754


>gi|296270782|ref|YP_003653414.1| PAS/PAC sensor domain-containing diguanylate
           cyclase/phosphodiesterase [Thermobispora bispora DSM
           43833]
 gi|296093569|gb|ADG89521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermobispora bispora DSM 43833]
          Length = 895

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 130/586 (22%), Positives = 253/586 (43%), Gaps = 26/586 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           IV+++   +   ++ T      I     +       +GD+++  D+              
Sbjct: 316 IVLVLLGRLFVLLVETAGMRDLIDLGDRQLRQFAESTGDLMFVCDLDGVIKEVAGVAT-- 373

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQF 492
            G     +     +   Y+H  D    + +L             G  +   R RAAD  +
Sbjct: 374 YGHRPADLVN--ASIADYLHPEDVPAVQQLLQRMAADEDGVEPHGSRRIGCRFRAADGTW 431

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
                        +      +    D+++Q      +    F D +TG+PNR  F +R+ 
Sbjct: 432 RPTESVATRHVLGDD---LVLITVRDLSDQVALRNQVTHLTFHDGVTGLPNRSYFEERVR 488

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             LD  A     R  V+ +D+D +  +ND +G A GD +L    RR+   +     LAR 
Sbjct: 489 EALDHRA----GRTAVIFVDLDGFTAVNDSVGHASGDYLLGQAARRLRSAVGPGATLARW 544

Query: 613 SGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            G+ F +++      ++  I      +R   A P  + +R++ +TAS+G A +     ++
Sbjct: 545 GGDEFAVLVEGTKPGDAQVIDLAERLVRAVSAEPFRVADRDVALTASVGVA-FDEDGQST 603

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPII 728
            ++L+NA++AM  AK  GG  VE F      S    ++   DL  AV   +  + Y P++
Sbjct: 604 GDLLRNADVAMSRAKELGGRRVEIFATHMHASVLQRLELASDLQRAVAEKQFTIEYQPVV 663

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L    +  +EAL++W       +   +F+ IAEE  +I +++ ++L    R++++WR+ 
Sbjct: 664 DLETCNVTAVEALVRWWRGS-TFVPPEKFLGIAEETGVIVSLSEWILREACREVVAWRES 722

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  + +N++++ + D    E +   + ++   P  + L   E +++   + +   L
Sbjct: 723 GWDIG--LSVNLSARQINDPRFVEKVAGALEESGLPPGALTLEVVEEMLVAGADETMKKL 780

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMA 906
             LR +G+ L +DDFGT  + L+ L  IP D +K + S ++G         + R+I+ + 
Sbjct: 781 AELRSLGVRLAIDDFGTGYASLASLRQIPVDMIKIDPSFVSGLGRDETLTLLTRTIVRLG 840

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++   ++A+ I     ++ L  MGC   Q   V+ P+    +  L
Sbjct: 841 HDLGLVVVAEGIERPEQLELLREMGCPRGQGYLVSRPMAARRVDSL 886


>gi|329903344|ref|ZP_08273437.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacteraceae bacterium IMCC9480]
 gi|327548422|gb|EGF33100.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Oxalobacteraceae bacterium IMCC9480]
          Length = 1035

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 234/485 (48%), Gaps = 28/485 (5%)

Query: 496  IIRIRPMSNSNGDILRYIGIAN--------------DIT--------EQKKSLEGILCNA 533
                 P+    G IL  + I                DI         E + + + I   A
Sbjct: 547  RCSSWPILAQRGQILGVLSIFQLPKDHPGSELMQLIDIAIDLASITIESRYAEQRIRRLA 606

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
              D LTG+PNR     +L   L  +      +  V+ ID+D++K IN+  G   GD VL 
Sbjct: 607  HYDELTGLPNRVLCGQQLDKALLHAQRHGR-QVGVLFIDLDRFKNINETFGHDAGDTVLR 665

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
             ++ R  + L+  D++AR  G+ F +++   ++ L++ D A  + +  + P  +  +E  
Sbjct: 666  EVSLRFLDTLRPSDLIARAGGDEFIVLVDGYDDPLELGDIARHLLQVASRPFAIAGQECQ 725

Query: 654  VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
            + ASIG AS+     ++  +LKNA++AM+ AK  G N+V+ + +       +R+ ++  L
Sbjct: 726  LGASIGIASFPQDGHSAQVLLKNADIAMHRAKDVGKNNVQYYSIDMHTHSVERLALEARL 785

Query: 712  CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              A+E  EL + Y P I +M   I G EAL++W+HP+ G +  +EF+ +AE+  +I A+ 
Sbjct: 786  QRAIERRELVIHYQPKIDVMTGRITGAEALVRWNHPERGLLHPAEFIDLAEDTGLIGALG 845

Query: 772  LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            + +L+    DI  +R         I IN++     D  L + M  +I      PS ++  
Sbjct: 846  MLVLDATCADINDFRLAGIEVG-RIAINLSGSQFNDTRLLDHMLQVIRTRQVDPSSLEFE 904

Query: 832  FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             +E +VM  PE++  L+  + ++G +L +DDFGT  S L+YL   P  +VK + S +   
Sbjct: 905  ITEGMVMHKPEQAIALMEEMIRLGFTLAIDDFGTGYSSLAYLKRFPVGSVKIDKSFINDI 964

Query: 892  --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   AI+++II MA+ +   ++A+ +     +  L   GCD  Q    + P+     
Sbjct: 965  PDDPNDSAIVQAIIVMARTLGMKVVAEGVETRTQLATLEAFGCDEYQGYFFSKPVAAADF 1024

Query: 950  LKLLK 954
            + L +
Sbjct: 1025 IALAR 1029



 Score = 39.9 bits (92), Expect = 2.3,   Method: Composition-based stats.
 Identities = 52/493 (10%), Positives = 138/493 (27%), Gaps = 66/493 (13%)

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACI------AILFCMSFYYPMVTASIARITLASIV 319
           +  L  YL  + +      I     A +       I+     +              +I 
Sbjct: 171 LGMLCAYLTLDYFDEYYHRIAEGRQATVSMHSDEGIVMIDWPFDARRLGEDISTNAGAIR 230

Query: 320 L-YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
           +   +    +  ++  + A  +  A+  +    + +             Q      L+  
Sbjct: 231 IQAGSREGFFESVEMNDSAEPVFLAYRKLAALPLTVVYTYRLHEALLPWQQRTSNRLLFS 290

Query: 379 VILIGFTVI------QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             + G  ++      QH+       + + ++  R  +    + D +   +   + V   P
Sbjct: 291 GAITGLILLLTLLLLQHIRRLHRSEEHLAANENRYRMLYESATDAILLINHRHEYVDCNP 350

Query: 433 DIATILGLA-SGSMHG-PIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAA 488
               +  +A    + G    + +P +   D        +L   +  +      E+ +   
Sbjct: 351 AALILFDVANKNQLIGKRFEDAMPSVPRADGKQHSPGKLLSLALDGQSQLF--EWAMLRK 408

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                +  I +     +N ++L  + +  DI  +K++                      L
Sbjct: 409 -GVPFFNEITLSRAHINNEELL--VAVFRDINARKRAELLQESQ------------NQLL 453

Query: 549 DRLTTILD-----------LSATDDNLRPTVMVID--IDKYKKINDVLGIAVGDDVLVSL 595
             ++  +            L+      R  V+++D  + ++      +G     + L S 
Sbjct: 454 HMISAGIGLQPIVHAITQFLARHAPGTRSMVLLVDAGLPRFSS---AIGAGFTVEFLDS- 509

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  +     +      +   +      ++      A    +  + PI     +I   
Sbjct: 510 AARLEIVDHATTM------SEAVLTRAPAMSAGPATSAAAFPGRCSSWPILAQRGQILGV 563

Query: 656 ASIGFASWTSSKITSSEMLKNA-ELA--------MYHAKHRGGNHVESFRVSSFRSDRVM 706
            SI             +++  A +LA              R  ++ E   + +       
Sbjct: 564 LSIFQLPKDHPGSELMQLIDIAIDLASITIESRYAEQRIRRLAHYDELTGLPNRVLCGQQ 623

Query: 707 IKEDLCLAVENSE 719
           + + L  A  +  
Sbjct: 624 LDKALLHAQRHGR 636


>gi|311696424|gb|ADP99297.1| response regulator receiver (CheY-like) modulated diguanylate
           cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [marine bacterium HP15]
          Length = 741

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 110/443 (24%), Positives = 226/443 (51%), Gaps = 6/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I ++    + +      D LTG+ NR+ F++ L+  L+++      +  ++++D+D++
Sbjct: 288 QEIEQRTAIQKDLARLESTDTLTGLANRRFFMEDLSHTLNIADRQMR-QVALVMLDLDRF 346

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + +ND LG   GD++L+ ++ R+  L     ++A   G+ F       ++   I      
Sbjct: 347 QTLNDSLGHQFGDELLIKVSERLNRLSNERLLVAYSGGDEFMFCQQQVDDIDDIIHLLGQ 406

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +++    P  +  +  ++T ++G A +  S + +  +L+NA++A+Y AK +G N  + + 
Sbjct: 407 IKQCFDQPYEVQGQSHSITGTMGVAVYPQSGLDADTLLRNADIALYRAKEQGRNTYQFYT 466

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 + + ++  +DL  A+ N+E  L Y P + L   EI  +EALI+W HP+ G +  
Sbjct: 467 EGMQEREVMRLELDKDLSQALANNEFVLFYQPQLNLDTGEIQSVEALIRWRHPRRGLLPP 526

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE   I  I  +++    R + +W        + I +N++ ++L D +L + +
Sbjct: 527 VEFIPLAEESGRITDIGRWVVMAACRQLAAW-KGTPQDGLRIAVNLSGRELDDEDLVDHI 585

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  ++       R+++  +E + + N E +R  L RL ++G++L +DDFG   S L YL 
Sbjct: 586 REALAAENVPADRLEVELTEEIFIQNIEHNRNQLSRLHQLGVNLAIDDFGVGYSSLGYLR 645

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +T  TE      I R++I +A N+   ++A+ +  E  +  L    C
Sbjct: 646 DFPVDLLKIDRSFITEVTERHDDAVITRAVINLAHNLGIQVVAEGVETEEQLSFLKNQRC 705

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           ++ Q   ++ P+  + + K L  
Sbjct: 706 NFAQGYLISRPIPVDDLEKALAS 728


>gi|160898708|ref|YP_001564290.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160364292|gb|ABX35905.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Delftia acidovorans SPH-1]
          Length = 947

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 207/439 (47%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++   I   AF D LT +PNR   L +    L +++  +     V+ ID+D++K++N
Sbjct: 493 EREQARRRIRQLAFYDGLTTLPNRSLLLAQAEQALSVAS-HEGHELAVVFIDLDRFKQVN 551

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L S+ +RI   L+  DI  RLSG+ F I+L     +         ++ +
Sbjct: 552 DSLGHPAGDRLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVI-ERLQSA 610

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  + +  +  TAS G A + +       +L  A++AMY AK  G      F     
Sbjct: 611 LGEPCMIDDVSLASTASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFSPEMN 670

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R   +R++++  L  A+ +  L L Y P + L D  + G+EAL +W H ++G IS + F+
Sbjct: 671 RLAQERLVLETALRDALRSGGLRLHYQPQLDLKDGRLYGVEALARWSHAEFGEISPARFI 730

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + L    R +  WR +    P  + +N++     + +L   +   +
Sbjct: 731 PLAEECGLIGELGTWALREACRQLGEWRSRGIDVPA-MSVNLSPTSFHNLDLPRMIADTL 789

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +ES+++     +   L  +   G+ L++DDFGT  S LSYL  +P 
Sbjct: 790 EHNALKPQDLTLEITESLLLDTNPGTMRTLQAVHSQGVRLSMDDFGTGYSSLSYLRRLPV 849

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +      E   A+  +I+ + +++  T++A+ +        L   G    Q
Sbjct: 850 SELKLDRSFVADLENDEAAQALSNAILGIGRSLHLTVVAEGVETAAQNTILREQGYPVAQ 909

Query: 937 DSHVASPLGFNSILKLLKE 955
               + PL    + + L+ 
Sbjct: 910 GYLFSRPLPAADLERWLQA 928



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 15/169 (8%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +     +   + A     +       R SL    +   V   D              + 
Sbjct: 190 ALSHVLCIATDITARVQADRRRQEHLRRLSLVADATDAAVVIADGNWTISYVNAGFTRMF 249

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +S  + G  R  +  +  +    F     + +   +   + E  +   D + +W+  +
Sbjct: 250 GWSSEEVVG--RAPIALLVPHASPEFTAAYRAELDAGKPVYREEI-LVGKDGERYWVSAQ 306

Query: 499 IRPMSNSNGDI--------LRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             P+   +G +               +++ +++              LT
Sbjct: 307 ANPVMGPDGRLHTTVTVITDITEAKMHEVLQRRALEAMARDQ----PLT 351



 Score = 63.8 bits (154), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 52/149 (34%), Gaps = 16/149 (10%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           T+ +  +A     Q ++S  ++ ++A+        ++      +    +   ILG  +  
Sbjct: 77  TMFETRVAGTAGQQALWSTLDK-AMALA-------EFTPEGRLMRANANYEAILGYPTSG 128

Query: 445 MHGPIRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             G + + L    +   +    +R    +           E R    D    W+     P
Sbjct: 129 AEGLLHSDLCTQAHADPDAYGRWRQRWGA---GETISRVGEHR--RRDGSTCWLEATYAP 183

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
           + ++ G +   + IA DIT + ++     
Sbjct: 184 VLDTQGALSHVLCIATDITARVQADRRRQ 212


>gi|152995192|ref|YP_001340027.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836116|gb|ABR70092.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 731

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/431 (28%), Positives = 213/431 (49%), Gaps = 6/431 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    +   A++D LTG+PNR+   D L   L  +     +    +  D+D +K+IND 
Sbjct: 293 KEKTAELQELAYKDPLTGLPNRRFLQDSLPKTLHNNQRRKRIS-AFIYFDLDNFKRINDT 351

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G  VGD VL+ +  R+ +L    D++ RL G+ FGI+L    +  + ++ A  + +SI 
Sbjct: 352 IGHDVGDQVLIIVGDRLNKLKAMSDLVVRLGGDEFGILLGDIGDEKQASEQANRILESIR 411

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            PI +  RE  ++ S+G A           +++NA++A+Y AK +G N    +      S
Sbjct: 412 TPIKMDSREYILSTSLGIAMIPEHGYDLVTIMQNADMALYQAKLKGKNQYAFYTEKMKIS 471

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +I  +EDL LA++ +E  + Y P   +    + G EALI+W+HP+ G I  ++F+ +
Sbjct: 472 THNLIKAEEDLTLALQRNEFEMYYQPQFNIRTNHVFGAEALIRWNHPEKGVIFPNDFIPL 531

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I  +  ++LE     +   R Q   P I + IN+AS+ L D      +Q L+ K
Sbjct: 532 AESTGKIVELGYWVLESSIAYLAK-RKQEGRPDILLHINLASEQLSDPHFVALVQELLGK 590

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I    +E+ ++ +   +R LL  L+ +GI + +DDFGT  S LS L  +P D 
Sbjct: 591 YQVPAHLIGFEITETSILEDIHLARYLLQTLKDMGICIAIDDFGTGYSSLSQLKNLPVDL 650

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +           I+ +II MA  +   ++A+ +      K L    CD+ Q  
Sbjct: 651 LKIDRSFVMDLENDPDDRKIVEAIIAMAHKLNIKVLAEGVETREQWKMLAAFQCDFGQGY 710

Query: 939 HVASPLGFNSI 949
           +V+  +  +  
Sbjct: 711 YVSKAVTADEF 721


>gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 592

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 230/441 (52%), Gaps = 5/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + + +   +L  A  D LT +PNR  F+++++  ++     ++    V+ +D D++K +N
Sbjct: 149 QLEMANAKLLEMALHDPLTRLPNRTLFMEQVSGAMNNLKEGNSQGFAVLFMDCDRFKVVN 208

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L+++  RI ++LK  D+L+RL G+ F II+   N    + + A ++ + 
Sbjct: 209 DSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGDEFAIIVHDVNEIEPVRNLADSILEV 268

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++ P  +  REI +  SIG     +       +L++A+ AMY AK  G      F   + 
Sbjct: 269 MSCPFQIYSREIFINMSIGVVLSNTDYQQPEHLLRDADTAMYRAKALGRGQYHIFDPAMH 328

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               D + ++ DL  A++N EL   Y PII L   +I  +EAL++W HP+ G +S   F+
Sbjct: 329 KEALDLLGLETDLRRALDNQELMAYYQPIINLETGKIYSMEALVRWQHPQRGLVSPGMFI 388

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE+ +I  I   ML      +  W++Q      + I +N++ +     +L   +  +
Sbjct: 389 PLAEEMGVITTIGTLMLVEACHQLKHWQEQKLVDEYVSISVNLSVRQFTQADLIATVDDI 448

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++++  +P  ++L  +ES ++ N + +R +L + R   I L+LDDFGT  S LSYL   P
Sbjct: 449 LTESGLNPKCLRLEMTESAIVENTQTARTILTQFRDRHIGLSLDDFGTGYSSLSYLHAFP 508

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S ++      + + ++ +II ++K +    +A+ I     + +L  + C+  
Sbjct: 509 VDTIKIDKSFVSLLDGTPENLGLIPAIIGISKTLNMVAVAEGIETPEQLAQLRELQCNGG 568

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL    + +LL   
Sbjct: 569 QGYFFSRPLPATQMAELLASH 589


>gi|83591897|ref|YP_425649.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83574811|gb|ABC21362.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 683

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 126/555 (22%), Positives = 239/555 (43%), Gaps = 28/555 (5%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDI--------ATILGLASGSMHGPIRNWLPYIHINDRDN 463
                 V   D +       P            +LG    ++          +H      
Sbjct: 144 DHIPLGVMLSDGLGRIAYANPAFLAEDIAAVRALLGATPQALATGY------LHE---GL 194

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            RT+ +  +  R    + +  +  AD Q     + I P+   +G + R + +    +   
Sbjct: 195 ARTLWEDLLCGR--VWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDRLMTVIEPRSP-- 250

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +          D LTG+PNR  F DRL T L  +   ++ +  V+ +D+D +K +ND L
Sbjct: 251 ATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRND-QLAVLFVDLDHFKTVNDSL 309

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD +L  +  R+ + L+  D LAR+ G+ F I L  + +    A  A  + +++  
Sbjct: 310 GHSFGDQLLQQVATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRR 369

Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
           P  L    E+ + +SIG   + +       +L+NA+ AMY AK  G N  + F     R 
Sbjct: 370 PFTLEGGHEVLIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQFFTEEMNRE 429

Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + ++  L  AV   +L + Y P++      +V  EAL++W     G I  S F+ +
Sbjct: 430 IQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGFIPPSRFIPV 489

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEEL +I  I  ++L         W+ Q       + +N++ + L + +    ++  +  
Sbjct: 490 AEELGLIDEIGGWVLWNACTQAKVWQAQ-GAKAFRVSVNVSWRQLRNPDFALRVREALEG 548

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    + ++L  +E +V+ +P+     L  L ++G++L +D+FG+  S +  L   PF  
Sbjct: 549 TGLGAAFLELEITEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKCLRQFPFSI 608

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    ++ +   ++ +   MA+ +  T++A+ +     ++ L    CD IQ  
Sbjct: 609 LKLDRSCVADVLTSHEDAVLVETAAIMARRLGLTVVAEGVETHAQLEFLREHYCDLIQGY 668

Query: 939 HVASPLGFNSILKLL 953
               PL      ++L
Sbjct: 669 LFGRPLPPEDFARML 683


>gi|328545199|ref|YP_004305308.1| Cyclic diguanylate phosphodiesterase domain protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414941|gb|ADZ72004.1| Cyclic diguanylate phosphodiesterase domain protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 683

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 123/539 (22%), Positives = 233/539 (43%), Gaps = 17/539 (3%)

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIN--------DRDNFRTILDSFVGYRRGRLQYE 482
           TP + ++       ++    +    I  +        D      +  +    +  R+   
Sbjct: 133 TPVMISMFASDGEPLYRNPASRASQIDPDTTLQNRLVDCGEAAALATALKDGKDCRIIA- 191

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R R       W  I  R   ++   +  Y+    D+TE K++ E     A  D LTG+P
Sbjct: 192 -RTRTNRG-IRWHEITARTCKDAVTGVPAYLVSEIDVTELKETEERAQYLADNDFLTGLP 249

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR      L  ++  S  D +    +  ID+D +K +ND LG   GD +L ++  R+   
Sbjct: 250 NRSYLQTHLPPLIVESV-DQDQPLYLYFIDLDGFKAVNDTLGHTTGDLLLRAVAGRLSGF 308

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           +    I+ARL G+ F + +   + +L   DF   +      PI++    + VT ++G + 
Sbjct: 309 VGERGIVARLGGDEFLVCIPDRSGTLNAQDFGRQLLDLFLEPIDISGHVLQVTLAVGLSI 368

Query: 663 WTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
                     ++++ +LA+Y AK          S  +     +++ +++DL  A++  E 
Sbjct: 369 CPDDGRDMDTLMRHCDLALYEAKTDRANRCTQFSMDLRERMEEKIALEKDLLRALDRGEF 428

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y P + +    I+  EAL++W HP+ G +  S F+   EE+ +I  +  ++   +AR
Sbjct: 429 VMFYQPRLCVQTGRILSAEALLRWQHPERGLLGPSLFIQACEEMGLIIDVGEWVYRTVAR 488

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                 +      I + IN++ +   D EL E +  L  +T  +  R+    +ESV++G+
Sbjct: 489 QQRELGEAGID--ISLSINLSPRQFSDPELIEKILRLPEETGCAAKRLGFEITESVLLGD 546

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR 900
            E  R  L R++  G  + +DDFGT  S L+YL   P   +K + + +         I R
Sbjct: 547 SEAIRTALRRMKAKGFEIIIDDFGTGYSNLAYLQKYPIGVLKIDQTFIKNIRT-SEPITR 605

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            I+ +   +   ++A+ +     +  L   GCD  Q  + + PL     ++L + +  L
Sbjct: 606 LILSLGNVLNVRVVAEGVETREQLDWLVENGCDEYQGYYFSRPLPLAEFVELYRTQQRL 664


>gi|117922378|ref|YP_871570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117614710|gb|ABK50164.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 706

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/556 (21%), Positives = 235/556 (42%), Gaps = 10/556 (1%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDN 463
           E  +  +  S + V+  D     +     +  I G ++  + G    +L   I  + ++ 
Sbjct: 154 EIMATTLEESAEAVYITDADNRILAVNKAMCRICGYSAEQLIGKTPEFLEAKILPSGQET 213

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                       RG    E   + +D          R +   +  +   + I +DI+ +K
Sbjct: 214 DCQAAMKL----RGFWHGETLKQRSDGSHFPAWQSSRRIETDDNALYH-VNIFSDISTKK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A  D LTG+PNR      L + LD    D +    +M +D++ +K IND  
Sbjct: 269 LLETQLTTRAMYDTLTGLPNRYHLKQILNSALDKLKDDPSALGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQECSCKEEIQLFAEQILSLFDS 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
           P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDQAGQLISLADTAMYSAKKNQPHLVFYDKAMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +  +L  A    +  L Y  I+ L   + +G EAL++W      +  ++EF+ + E
Sbjct: 449 LKLKLINNLRHAHSLKQFNLAYQAIVDLHTNKPIGAEALLRWQKSPNEHYEAAEFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  + LE+  +    WR     P   + +N++   L   +    + + +    
Sbjct: 509 ETGLIITIGQWALEQACKQAAIWRASY-QPDFKVSVNVSPLQLEHVDFVGQVISALEMVA 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE +R  L R++ +G+ + +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPAEALILEITESALLRQPELARQTLERIKALGVGIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +    +  +      +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNDVSGQKLCHAIVQLAQALDIHFVAEGIETQQQKDIMTHMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK-LLKER 956
            P       +  L ER
Sbjct: 688 YPSSVEQFTQAFLAER 703


>gi|115526694|ref|YP_783605.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115520641|gb|ABJ08625.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 780

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 147/742 (19%), Positives = 303/742 (40%), Gaps = 50/742 (6%)

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIF-LFMYLH---------WNRWHAKVGYIT 286
           G  + L  L +G++ IW     I    +L       YL+           RW  +  +  
Sbjct: 42  GIAALLTALKTGDVWIWPCALLIIAVGTLRALQTRNYLNSGTATDAASAKRWETQYRFGA 101

Query: 287 FSGIACIAILFCMSFY-YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
                 + +   +         A +   T+            Y   + +   + L+ +  
Sbjct: 102 ILYALSLGLWCVVVILGTDDPVAHMLCTTVTVGYTAGGAARNYG--RPHIVQLHLLLSCG 159

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            + +  +    A    L   ++        + + +     +  + L  G     + +   
Sbjct: 160 PMSLALVLHGGAYYYGLAALLVLFFYGLRSINLNL---HAIFVNALLAGEREAALAN--- 213

Query: 406 RQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH--GPIRNWLP------YI 456
           +   A+      +  +     R+       A ++ L    MH  G   + +        I
Sbjct: 214 QFDTALNNMPHGLCMFGGKDGRLAVMNRRFARMMRLPDDFMHRSGSAADIVKACVGAGTI 273

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                    + +D+ +      +  E     A           +PM+         + + 
Sbjct: 274 SPASGRLIVSEIDNALAGEIITVDSETTDAHA------FSWTFQPMTGG-----GTVVLV 322

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-TDDNLRPTVMVIDIDK 575
            DITE++ +   I+  A  D LT +PNR +F D +  +L ++    +     ++ ID+D+
Sbjct: 323 EDITERRSTEARIIHLARYDELTALPNRVNFRDEIERLLTIAQNRGETQPAALLFIDLDQ 382

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND LG   GD +L  +  R+ E+L+  D +AR  G+ F +      +    A  A 
Sbjct: 383 FKQVNDTLGHPCGDRLLCDVANRLREMLRPEDYIARFGGDEFVVFQQHLKSDEDAAVLAR 442

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   ++    +    + + ASIG A  T+  I +  +LKNA++A+Y AK  G      F
Sbjct: 443 RIVDRLSERYVIDHHVVEIGASIGIAM-TAPGIKADVLLKNADMALYRAKADGRGTYCFF 501

Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           R    ++   R M++ DL  A+ N E  L + P++ L    I   EAL++W+HP  G +S
Sbjct: 502 RDEMAQTVEARRMLELDLRRALANDEFELFFQPLVNLKTGRISTCEALLRWNHPVRGTVS 561

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             + + +AEE+ +I  +  ++L +   + + W +      + + +N +S+     ++ + 
Sbjct: 562 PVDIIPVAEEMGLIIDLGRWILRKACTECMQWPEA-----VSVAVNFSSQQFHQRDVMDE 616

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  +  +  +P R+++  +ES ++ N + +   L +L   G+ + LDDFGT  S LSYL
Sbjct: 617 VRYALQASGLAPQRLEIEITESSLLRNTQWTLDALHQLHAEGVRIALDDFGTGYSSLSYL 676

Query: 874 GYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG- 931
              P   VK + S + G    R   +LR +  ++ ++  +++ + I     ++ ++  G 
Sbjct: 677 HTFPLQKVKIDRSFLEGIDTDRPLTLLRGVARLSADLGMSVVVEGIETNEQLELISADGT 736

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
               Q    + P+  + + +LL
Sbjct: 737 VTEAQGYLFSRPVPASRVRELL 758


>gi|331007775|ref|ZP_08330893.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium IMCC1989]
 gi|330418414|gb|EGG92962.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [gamma proteobacterium IMCC1989]
          Length = 665

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 222/464 (47%), Gaps = 14/464 (3%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G++  +     +  E   + E +   AF D LTG+PNR+     +   L  +  +  
Sbjct: 195 GEFGELAHWFNQRTN--ELLATQEQVNSLAFYDPLTGLPNRKMLKIHIDKKLASAQKN-K 251

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI- 622
               ++ +D+D +K +ND LG  +GD +L+   +R+   L+  D+  RL G+ F I+L  
Sbjct: 252 TCGAIIFLDLDHFKVLNDSLGHDIGDQLLIEFRKRLDLCLRKGDLAGRLGGDEFVIVLSL 311

Query: 623 ----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
               + N +   +  A  +  S+  P  L      +TASIG A +     ++ ++LK A+
Sbjct: 312 PAFKNHNRTKIPSAIAKQILSSLTEPFLLKGNMYHITASIGIALFDEHSSSTEDILKYAD 371

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMYH+K  G N    F          R+ I++DL  A++N  L L + P +   D +  
Sbjct: 372 SAMYHSKSNGRNTYCFFENGMQIKADQRLRIEKDLRHAIDNDGLSLAFQPQL-PTDNKCP 430

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            LE L++W HPK G IS  +F+ IAEE  +I  +  ++++   + +  W  Q  +    +
Sbjct: 431 SLEVLVRWIHPKEGFISPLDFISIAEESMLILTLGDWVIKNTCKQMKEWEKQGIIFD-HV 489

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            INI+            +   I  +   P ++ +  +E V++ NP+R    + RL+++GI
Sbjct: 490 SINISPIQFQQVSFVHHLANTIKDSDVRPEQVMIELTEGVIIDNPDRVVEKINRLKEMGI 549

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            +++DDFGT  S LSYL  +P D +K + S +         + I  +II MAKN   T+I
Sbjct: 550 RVSIDDFGTGYSSLSYLKKLPLDELKIDRSFIQEITNDHSDVVITETIIAMAKNFGYTVI 609

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           A+ +      + L   GC + Q    + PL  N I K LK   P
Sbjct: 610 AEGVETVEQKEILISKGCQFFQGFLFSKPLPPNEIPKYLKSLTP 653


>gi|262274875|ref|ZP_06052686.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia
           hollisae CIP 101886]
 gi|262221438|gb|EEY72752.1| putative c-di-GMP phosphodiesterase A-related protein [Grimontia
           hollisae CIP 101886]
          Length = 633

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 136/575 (23%), Positives = 249/575 (43%), Gaps = 20/575 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                        +  + S   R        GD           ++       +LG  S 
Sbjct: 64  IFHAADTSERQVLTSALESSESRFENLCQLVGDGCCVL-ADGVVLSANRVAGKLLGFDSH 122

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
           +           I      +    L++    +    Q   + R AD      +      +
Sbjct: 123 NEILGEDIENLLISPVKGQSVEASLNALKPGQ----QLVCQAREADGNPALNVSFGSVSL 178

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +G I+     A  + + +++ E     A  D LTG+ NR  F  RL  ++     + 
Sbjct: 179 LGGSGAIITLSRTAA-VPDHQQTFEK---LAQFDALTGLYNRHGFSRRLVQLI-----NS 229

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N    +  +DID +K IND LG  +GD VL  + +R+ + L    IL  L G+ F I+L 
Sbjct: 230 NTPLLMFYLDIDNFKNINDSLGHHIGDRVLQDIAQRLRKRLPPDTILGHLGGDEFAILLP 289

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             ++     + +  +   I+ P +L      +  SIG   +      +  +L+NA+ AMY
Sbjct: 290 EHSSDEVANELSRRVVDIISQPFDLYHFSKYLACSIGMVRYPDDGKDARSLLQNADTAMY 349

Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK RG N + ++   ++     R+ ++ +L  A++N+ L + Y P +   D  I G EA
Sbjct: 350 EAKERGRNRLVTYNQHMNKEARMRLWLEIELQKALQNNSLEVWYQPKVNAKDYTINGAEA 409

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G IS   F+ +AE   MI+ +   ++  + + +  W++     P  + IN+
Sbjct: 410 LVRWKHPVEGYISPGRFIPVAERSGMIELLGRNVMREVFQTVRRWQNMKI-LPGRVAINL 468

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   +  L   M+ L + T  +PS I    +ES VM + E +  +L  ++ +G +L++
Sbjct: 469 SPQQFRNPNLTSHMKKLQAATEIAPSLITFELTESAVMNDGEHAIQMLNAIKDLGFALSI 528

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   P D +K + + ++      K++ ++ +II + +++  +++A+ +
Sbjct: 529 DDFGTGYSSLSYLAKFPLDEIKIDRAFISDMETFPKQVTLIENIITLGRSLNMSVVAEGV 588

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                   L  + CD IQ  H   P+       LL
Sbjct: 589 ETGKQASVLANLKCDTIQGFHFYKPMPRAEFETLL 623


>gi|163782558|ref|ZP_02177555.1| hypothetical protein HG1285_16780 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882131|gb|EDP75638.1| hypothetical protein HG1285_16780 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 954

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 136/602 (22%), Positives = 260/602 (43%), Gaps = 33/602 (5%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS---------LAVLGSGDI 417
           I+   VG L +          + +       Q I    ER            A+    + 
Sbjct: 370 IKGRTVGVLNIYSATPNMFGEEEIELLKELQQDISFALERIEKEKFIKLINTAIERGHEW 429

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRR 476
           V   D   + +     +  I G +   + G   R +    H   ++ ++ +  +    R 
Sbjct: 430 VLVTDEEGNILYVNRAVEEISGYSQDELFGRNPRIFKSGYH--TKEFYKNLWRTIKSGR- 486

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              Q  F  R  + +  ++   I P+   S G  LR++    DIT +K   E I    + 
Sbjct: 487 -SFQAVFVNRKKNGELFYLDQTITPVRVGSKG--LRFVAFGKDITSEKYLEEEIARLKYT 543

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR+ FL  +   L+ +   ++      +IDI  +  +N+V G AVG+++L  +
Sbjct: 544 DALTGLPNREGFLTAVKLTLEEAGDREH---AFFLIDILDFSGLNEVYGSAVGNEILRKV 600

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              + E L   DI+ RL G+ F ++     +   +A  A  +    + P+ +  + I V 
Sbjct: 601 AHMLREKLFSRDIVGRLGGDEFAVLARGV-SEKDVATIADKLFTLFSSPLEVDGKSIKVN 659

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
            ++G + +         +L+ A  A+  AK  G N    F     R   +   ++ +L  
Sbjct: 660 INVGASLYPKDAKDPEGLLEKASTALSFAKREGENTYRFFSKDINRVVQEHFRLRANLEK 719

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++       + PI RL + E+VG E L++   P+    S +EF+ + E+  +I+ +   
Sbjct: 720 ALKEDRFLFYFQPIYRLPNMEVVGCETLLRLRGPRGKIQSPAEFIFVLEKTGLIRDVEDR 779

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           MLE++   I       +     +  N++ K   D    E ++ +        S + L  +
Sbjct: 780 MLEKLKEFI-----LRHDKKFMVTFNVSPKSFRDETFVEKVKEVAKSVG---SSMVLEIT 831

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E + + NP+ +   L  +R  G+ + +DDFGT  S L+YL  +P D +K +   +     
Sbjct: 832 ERLFVENPDYAMEFLEDIRSSGVRVAIDDFGTGYSSLAYLETLPVDILKIDMKFVHRMVE 891

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + K +A++ +I+ +A+ +    IA+ +  E  ++ L  +GC Y+Q  +++ P+    I K
Sbjct: 892 SSKSLAVVETIVELARKLGMETIAEGVESEEQLRLLKLLGCTYVQGYYLSKPMSEKQIDK 951

Query: 952 LL 953
           +L
Sbjct: 952 VL 953



 Score = 74.2 bits (181), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                +  + G +   +      WL  +H +DRD                L   +R R  
Sbjct: 32  FLNSWVEKLTGWSLKEIKSNTNWWLENVHPDDRDRVTIECRELSEG-NDVLTRSYRFRKK 90

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           D  + +++  +  +   N   ++ +G+  DI+ Q++  E
Sbjct: 91  DGSYIYLLETVSLIECMNEREIKVLGVWEDISLQREYYE 129



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYE 482
               V      + I G     + G   +    +    R+  + ++   +   +  R+  E
Sbjct: 146 QEGVVYANKAASEIFGYPREDLIGKEVH--ELVAPEYREIVKNVVSRRLKGEQFDRIYSE 203

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +   +          R +    G    ++ I  DIT+QKK        
Sbjct: 204 LPILRKNGTVGITYTFTRTIYWK-GKPAGFV-IFIDITKQKKFERLFRVL 251


>gi|254503180|ref|ZP_05115331.1| hypothetical protein SADFL11_3219 [Labrenzia alexandrii DFL-11]
 gi|222439251|gb|EEE45930.1| hypothetical protein SADFL11_3219 [Labrenzia alexandrii DFL-11]
          Length = 728

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 249/572 (43%), Gaps = 19/572 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +    ER + A+ G+   VW+WD+  +    +      LG     +      ++  +
Sbjct: 161 TRALKLSEERYAFAISGASQGVWEWDLNDEHNYLSEQWKLRLGYTEDDLPNAPGLFIKIV 220

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR N      + +   R       R+     +  W+  R   + N+     +  G  
Sbjct: 221 HPEDRANVELAFQAHLK-DRAPFDVSLRLLHKSGEQIWVRARGHAVWNNENRATKMGGTI 279

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DITE +K L+     A +D LTG+ NR  F+ R+   L   ++ +     V +ID+D +
Sbjct: 280 SDITEYRKLLDRAQYYAERDQLTGLYNRHYFM-RIAGDLLHKSSPNCRSCGVAIIDLDDF 338

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND  G   GD  L+ L  R+ E +    I+ RL G+ F ++  +  +  +   +   
Sbjct: 339 KEINDCHGHPAGDSALIVLAERLVEYIGDTGIVIRLGGDEFAVVFSTHLSWEETVQYFKR 398

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695
           + + ++ PI         +AS+G A  T +     +++L+ A+LA+Y AK  GGN V  F
Sbjct: 399 LLEEVSKPIAWEGFLFECSASLGLAKKTQAIGSDVNDLLQQADLAVYDAKAAGGNAVRCF 458

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  S   +R  I      A+      L + P   L  +++ G EAL++  +     + 
Sbjct: 459 SEALLSTAVNRTKILSSARRALTEERFLLCFQPKADLQSQKLAGFEALLRLSNEDGTLVP 518

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL----DNE 809
            S +  + E+  +   I   +  R      SW    +     I  N++  + L    D +
Sbjct: 519 PSSYSEVFEDSVLACRIGEMVRLRAIDQASSWLKAGHDFG-HIAFNMSPPEFLAYQRDAQ 577

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCS 868
             + +   IS     PS I +  +E V++    E    +L RLR+ GI++ LDDFGT  +
Sbjct: 578 FVDRLIEAISNAGLKPSHIHVEVTEDVLLTRKRENVSSILRRLRENGITVALDDFGTGHA 637

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L +L    FD VK + S +     ++  +AI+ +I  +A  +   I+A+ I  +  +  
Sbjct: 638 SLLHLKETEFDLVKLDVSFVRSMLTSDVDMAIVETITKLAAKLGKQIVAEGIETQEQLAA 697

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           L  +G  + Q   +  P+  +++       FP
Sbjct: 698 LQGLGVAFGQGYLIGHPVPGDAV------HFP 723



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSM 445
           +   ++  Y  Q +   GE        +G   W+WD + D+    +  +A + G+     
Sbjct: 1   MDKKVSKVYPVQTLRRPGELFEEVEALAGIGYWEWDEIGDKCTYCSEQLARMHGVTVEEF 60

Query: 446 HGPI---RNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                     L ++H +DR+++R   L   +   +  ++ E+R+        ++  R   
Sbjct: 61  MRRATSMDADLEWVHPDDREHYRTQTLR--LSQTKSIVELEYRIIQTGGGEIFVRERGVA 118

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           + +++G  LR  G   DIT  K +       A +D
Sbjct: 119 VVDADGTHLRSYGFILDITCLKTAE-----LALRD 148


>gi|300868898|ref|ZP_07113504.1| putative Cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Oscillatoria sp. PCC 6506]
 gi|300333115|emb|CBN58696.1| putative Cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Oscillatoria sp. PCC 6506]
          Length = 557

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 138/534 (25%), Positives = 247/534 (46%), Gaps = 24/534 (4%)

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY--EFRVRAADNQFH 493
            +LG +  ++       +     +D      ++D  +  +   +    E R R    Q  
Sbjct: 24  KVLGYSISAIVFSGEEAIQA--ADDMQPDLVLMDIHLQGKMDGITAAEEIRSRF---QIP 78

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA--------FQDNLTGIPNRQ 545
            + +        +  + R           K   E  L +A          D LT +PNR 
Sbjct: 79  VVYLTA---YADDNTLQRVNATKPFGYVVKPFEEKNLHSAIQIALHRHQYDYLTNLPNRS 135

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              +RL  IL+       L P ++ + +D+  KIN  LG ++GD VL  +++R+      
Sbjct: 136 LLRERLNQILEKQKAFQTLIP-IVSLSVDRINKINGTLGHSIGDSVLRIISQRLTNCNPN 194

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            +++ARL    F II+          + A  +   I+ PI +   E+ VTASIG A +  
Sbjct: 195 FNMVARLEAAEFAIIMPLIEEKEDTGNVAQTILDMISDPIVVDGYEVYVTASIGIAFYPG 254

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLV 723
                 E+LKNA  AMY+A+ +GGN  + +   S       I ++  L  A++ SE  + 
Sbjct: 255 DGTKGDELLKNAYAAMYYAQQQGGNSYQFYTSKSSIVSINQIIQETSLRNALKCSEFEVY 314

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P + L   +IVG EAL++W+HP+ G +   EF+ +AEE+ +I  +  ++L+   +   
Sbjct: 315 YQPQVELKTGKIVGAEALLRWNHPERGLVYPDEFIALAEEMGLIIPLGEWVLQTACKQTK 374

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W++  +  P+ I +N++ +      + E ++ ++ +T   P  ++L  +ES+V+ N   
Sbjct: 375 IWQES-DFSPLRIAVNLSGRQFNQKNIAERVRQILKETGLDPKYLELEVTESLVIQNESA 433

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   +   R +GI + +DDFGT  S LSY    PFD +K + S +       K  AI ++
Sbjct: 434 ATKAMTEWRTLGIKIAVDDFGTGYSSLSYPKRFPFDIIKIDRSFICNITNDPKNAAITKA 493

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           II MA ++   +IA+ +  + ++  L +  CD +Q    +  L      +LLK+
Sbjct: 494 IIQMAHSLNMKVIAEGVETQAELDFLYQYECDEMQGYFFSKALTNKEFEELLKK 547


>gi|163853430|ref|YP_001641473.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163665035|gb|ABY32402.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 561

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/474 (25%), Positives = 214/474 (45%), Gaps = 27/474 (5%)

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            RVR        +   + P+         +     D+TEQ          A Q+ LTG+ 
Sbjct: 83  IRVRLTLGGDRRVEAALAPL-----SAGGFALTFEDVTEQ----LRGAALARQEPLTGLC 133

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DRL   L  +A        V+++D+D++K +ND LG  VGD +L  +  R+   
Sbjct: 134 NRVGLHDRLDAALTEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192

Query: 603 LKFPDILARLSGNRFGIILIS--------ENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            +  D++ARL G+ F I+ +                   A  +   +     +    + V
Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPHAGVEQPHAAEALARRLVDLVGRTYVVDGHMLNV 252

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
             S+G A   +    + ++LK+A+LA+Y AK  G      F  +     +    ++ DL 
Sbjct: 253 GVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLEIDLR 312

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   +  L + P I+L   ++ G EAL++W+HP+ G +S + F+ +AEE+ +I  I  
Sbjct: 313 RAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIVGIGE 372

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R+   W       P  I +N++        L E +  ++++T   P+R++L  
Sbjct: 373 WVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTGLDPARLELEI 427

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E  ++ N +    +L  LR +G+ +++DDFGT  S LSYL   PFD +K + S + G  
Sbjct: 428 TEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFVRGME 487

Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                 AI+R+I  +  ++     A+ +     +  +   GC  +Q      P+
Sbjct: 488 GNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPM 541


>gi|113969374|ref|YP_733167.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|114046601|ref|YP_737151.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
 gi|113884058|gb|ABI38110.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113888043|gb|ABI42094.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
          Length = 684

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/431 (28%), Positives = 214/431 (49%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVH-KSSFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     ++RL G+ F I+  S ++  + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +I G EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQ-KDGRLISPISFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  R +  W+ +     I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCRVLREWQKKY-NFAIPIAINVASQQFADASLVSDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++    +  AI  +I+ + K +  TI+A+ I  E  +  L R  C   Q  + +
Sbjct: 597 KIDRCFVSDL-PEDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQGFYFS 655

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 656 QPLPQAEFEAL 666


>gi|168334591|ref|ZP_02692744.1| hypothetical protein Epulo_06318 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 696

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 106/496 (21%), Positives = 225/496 (45%), Gaps = 11/496 (2%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +  +   +     E R   +     W+ + ++    +N D++  +    DI E+K S E 
Sbjct: 208 EEALKTNKFEYSMEIRYNHSVRGNIWIYLMVKYFRPANSDLMNILVTMVDINEEKNSEEQ 267

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +     D +TG PN+  F+              + +   + +D D +K IND  G A G
Sbjct: 268 SMSL-LYDPVTGSPNKNFFIRYFNE-------HKDTKLAFIYLDADNFKSINDSFGRAFG 319

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VL  + +R+  +     I+ R   + F I++    +  +I DF + + +    P    
Sbjct: 320 DAVLNEIIKRVNGIKHDKFIIGRCFADEFLIVIEDFEDENEINDFMMVLSQIFDEPFTNS 379

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
                V+ S G + +        ++L NA++AM+  K  G  +   +  S  ++  +++ 
Sbjct: 380 GVSFGVSYSAGISVYPKDGKNFEDILNNADIAMHRVKAEGKRNFVFYNPSFKQTVLEKMY 439

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ DL   ++N+E  L Y P + ++  ++ G EALI+W  P    I   +F+  AEE  +
Sbjct: 440 MESDLREGIKNNEFSLYYQPQVDMLTNKVRGFEALIRWLKPDGRIIPPFKFITSAEETGL 499

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  +  +++E   + I   RD      + + +NI++  +        ++ ++ +T  +  
Sbjct: 500 MIPMGAWIIEEACKFINKLRDA-GYENVHVAVNISAVQITQKSFVPELREIVERTKVNTK 558

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ +  +E+++M + + +   + +L+ +GI + LDDFGT  S L+YL  +P D +K   S
Sbjct: 559 QLHIEITETILMKDIKTNTAKIRKLQDMGIIIALDDFGTGYSSLTYLKQLPIDVLKIEKS 618

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +      R  ++  II +   ++  ++A+ +     +  L    CD +Q   V+ P+  
Sbjct: 619 FVDDIGTGRKNLVGPIINLGHELDLEVVAEGVEEREQLDYLLSYNCDILQGYIVSKPMPE 678

Query: 947 NSILKLLKERFPLVKN 962
           + ++  L+  +   K 
Sbjct: 679 DEVMAFLESEYAPEKT 694


>gi|71734809|ref|YP_274835.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71555362|gb|AAZ34573.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 711

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 108/432 (25%), Positives = 207/432 (47%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +   +        +M +D+D +K +ND  
Sbjct: 243 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVSESGGC-FALMFMDLDGFKPVNDAF 301

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+  ++       A      I  
Sbjct: 302 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGDEFV-LLVELHDPQDALAVATRQVNEIGN 360

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 361 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 420

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 421 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 480

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 481 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 539

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 540 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 599

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 600 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFL 659

Query: 940 VASPLGFNSILK 951
           +  PL      +
Sbjct: 660 LGYPLPAEQFSR 671


>gi|307725816|ref|YP_003909029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
 gi|307586341|gb|ADN59738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
          Length = 667

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 131/542 (24%), Positives = 250/542 (46%), Gaps = 11/542 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D              + G+   ++ G    W  ++   D       +  F   R    + 
Sbjct: 129 DRHGRIQRFNRLAEELTGVKEENIVGRN-VWALFMSSEDGAASSQNITGFF-NRGVSYEV 186

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E RV+    +  ++       S S  D    I    DITE++ + E +   A  D+LTG+
Sbjct: 187 ERRVKTLQGERLFLFRNKFVQSGSGVDEQYLICSGTDITEERLAQERLTQLANTDSLTGL 246

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR +  D++ + ++ +A        V+ +D+D +KK+ND  G   GD ++  ++  IG 
Sbjct: 247 ANRNAIQDKIRSAIEEAA--PGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSAAIGA 304

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D LARL G+ F I+L ++  + ++   A  + + +  P +L   E+    SIG A
Sbjct: 305 CLNEGDTLARLGGDEF-IVLAAKGTAQELEATAQRILERMRTPFSLGLVEVYTGCSIGIA 363

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
            +         ++++A+ AMY AK  G      F     R   + + +  +L   +E  +
Sbjct: 364 RYPEHGDNLESLIRSADTAMYVAKDAGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLEEGQ 423

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L    + G+EAL++W+ P+ G I   EF+  AEE  +I  +  ++++   
Sbjct: 424 LTLHYQPKLLLSTGAVQGVEALVRWNSPERGQIMPVEFIRYAEESGLIGVLGRWVMQT-- 481

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               + + +A+   + I IN++++ L+D  +       +++    P  + +  +ES ++ 
Sbjct: 482 AAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFTEALAEARLDPCLVDVELTESCLIE 541

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IA 897
           +   +  L+ + R+IG  + LDDFGT  S LS LG IP D +K + S +          A
Sbjct: 542 DEAAAIDLIKQFRQIGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINTDSKAQA 601

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           ++RS++ +A+ +   ++A+ I  E +   +  +  +Y+Q    A P+      + L++R 
Sbjct: 602 LVRSMVVVAQELGFKVVAEGIETESEEAFMKGLDVEYVQGYLYAHPMPAADFERWLQDRQ 661

Query: 958 PL 959
            L
Sbjct: 662 KL 663


>gi|52841748|ref|YP_095547.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628859|gb|AAU27600.1| sensory box protein/GGDEF domain/EAL domain [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 849

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 154/803 (19%), Positives = 334/803 (41%), Gaps = 55/803 (6%)

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252
            I+   A    I     ++           A+      +I         + ++      +
Sbjct: 61  AIVYNTALCFIILSFSIFLFLNC---YYKSAITLSTTVFILSGLALTQHVFSINLQIDEV 117

Query: 253 W-------------RACSEIALSSSLIIFLFMYLHWNRW---HAKVGYITFSGIACIAIL 296
           +             R  S  A    LI    + ++   +   +  +       + C+A+L
Sbjct: 118 FFHHYQSIENAYPGRMASNTAFCFLLITTALVLMNIRGYQSFNNSLAGALGLLVFCLALL 177

Query: 297 FCMSFYYPMVTASIA------RITLASIVLYYTYFIIYHGMKGY-------ERAVLLIPA 343
           F   ++  +  A          I      L  +  ++                A+  + A
Sbjct: 178 FISGYFSDIQQAYKWGNKTPMSINTGIGFLLLSLAVMGLYWHNNTLYQLNSGIAMPYLSA 237

Query: 344 WILIFIWFIGLWMAIT----KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           + ++F + +  +          L  ++    L  G V   IL G  +    LA       
Sbjct: 238 FCIMFTFSLLSFEIFKKEKELNLSTNLSISTLALG-VFFSILFGLIIRLWQLAKISAVTA 296

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--- 456
            ++  E     +  + D +   D     +        +      S+     + +  I   
Sbjct: 297 KYALSE-IKATLESTADGILVVDRAGKVMNYNKRFLNMWYQEERSLKTINYHDIKLIINK 355

Query: 457 -HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             IN R+  +  ++  +     +  +E + +    + ++     +P+   + +I+  +  
Sbjct: 356 QLINRRETIQR-INKILKNPNYQHAFELKFK---GEIYYDCYT-QPLKLDD-EIIGRVWS 409

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT  K+    +   +  D LT +PN+   ++ L   +  + +   +   V ++D+D+
Sbjct: 410 FRDITIPKRLEIELSHQSTHDMLTNLPNKVLAINMLGYAMKTAVSSKKI-VGVYLLDLDR 468

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           + +INDV G + GD+++ ++++R+ + +    +L RLSG++F I++ S NNS ++     
Sbjct: 469 FTQINDVFGHSKGDEIIKAISKRLIDCVPMNHMLGRLSGDQF-IVIASINNSKEVVTGVT 527

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +   P+ +    I ++ S+G + +     T   +L  A++A+   K  G N  + +
Sbjct: 528 RLLSAFHEPVKMNGHSIKMSCSVGISFYPKDGNTVDTLLSKADIALSRTKVEGRNSFQFY 587

Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      ++++ +L  AV  +E  L Y PI++L    ++G EALI+W+HP+ G I 
Sbjct: 588 TQEMHSYTLEHILLESELKNAVAKNEFVLYYQPILKLSSLNVIGFEALIRWNHPRNGLIL 647

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AEE+ +I  I  ++   + + I +W+ Q     I I INI+ K      + + 
Sbjct: 648 PDKFIPLAEEIGIIGEIGDWVFVTVCKQIQAWQLQ-GFKNIKISINISPKQFKFQYIPKR 706

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L+S+       I+L  +E++++         L +L+++GI +++DDFGT  S LSYL
Sbjct: 707 INELLSEFQVKSESIELELTENILIDKSTDIIDTLSKLKEMGIQISIDDFGTGYSCLSYL 766

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + + +      +    ++++II MAK    ++IA+ I  +  ++ L ++G
Sbjct: 767 KDLPIDILKIDQTFVKDLKNNQSNQTLIKAIIAMAKKFNLSLIAEGIENQYQLEFLKKLG 826

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C Y Q  + + P      ++ L+
Sbjct: 827 CHYGQGYYFSHPKPTEKCMQFLQ 849


>gi|313498481|gb|ADR59847.1| Uncharacterized signaling protein PA1727 [Pseudomonas putida
           BIRD-1]
          Length = 695

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 113/438 (25%), Positives = 211/438 (48%), Gaps = 7/438 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LT +PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 255 ANQELTQLALHDTLTDLPNRTLLADRIEQAIAKVAEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L ++  R+   L   D LAR+ G+ F  +L+         D A+     ++ P
Sbjct: 314 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELQEPNDAMDVAVKQVNLVSRP 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ ++AS+G   +  +     E+L+NA+ AMYHAK  G N    F   ++S   
Sbjct: 373 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL +A+E  +  L Y P       + +G EAL++W+HP+ G +    F+ +AE
Sbjct: 433 QQLQLLQDLRVALEQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQQGLLLPDRFIGLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W DQ +     + +N+++       L + +   + +  
Sbjct: 493 KTGLIIPIGEWVLTEACRQMRQWLDQGHH-GWRMAVNLSAIQFCHAGLVDSVARALQQNG 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  +     LTR+GCD +Q   +
Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDKQQDFLTRLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLKERFP 958
             P+     +  L+   P
Sbjct: 672 GQPVPAEQFMDKLQAMAP 689


>gi|254372423|ref|ZP_04987913.1| hypothetical protein FTCG_01647 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570151|gb|EDN35805.1| hypothetical protein FTCG_01647 [Francisella novicida GA99-3549]
          Length = 772

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 134/564 (23%), Positives = 248/564 (43%), Gaps = 13/564 (2%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YI 456
           + I  D E     V  S D V   D   + +        + G       G     L    
Sbjct: 214 EKIDKDKEIADYIVNNSDDSVMVTDQYLNIIYVNKAFEVVTGYTKTEALGNTPAMLSSRK 273

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D+  +  +         G  + E   R    + +    +I  +   N  ++ Y+ + 
Sbjct: 274 H--DKYFYERMWTKLKSQ--GAWEGEIWNRRKSGELYLTWAKILTVK-KNSQVIYYVSVE 328

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI++++  L+ I   A+QD LTG+ NR  F   ++  ++  A       T+M +D+D++
Sbjct: 329 TDISKRRIRLDEIEKYAYQDMLTGLFNRYYFESHISDHIEKGARQIQ-PFTLMFLDLDRF 387

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++NDV G   GD +L+S++ R+ EL++  D++ARL G+ F +  +           A  
Sbjct: 388 KEVNDVYGHQAGDKLLISVSNRLKELVREKDLVARLGGDEFLLFFVDMT-IDNAIKKANK 446

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + IA P ++ +++  ++ASIG  ++         +LK A+ AMY AK  G N    + 
Sbjct: 447 VVEYIAKPYDIDDKQFIISASIGVVNYPQDGTDFEHLLKYADAAMYRAKDLGRNRFFLYN 506

Query: 697 VS--SFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     + IK+ L  A EN   + +++ P   L   +I G+E L + +HP  G + 
Sbjct: 507 QEISDKVCYDLKIKQALNDAFENTDYIQVLFQPQYDLKQRQIYGIEILSRINHPDLGVVC 566

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ I + +  +   +  +L++  + I S  D        I  N+    ++  + C  
Sbjct: 567 PKDFIPILQSINQMPRFDKIVLQKACQQISS-NDMMLEQNFRISQNVTVPVIMSEQYCRE 625

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              +I +   SP R      E++ + + + +      L+K GIS+ +DDFG+  S LSYL
Sbjct: 626 FIDIIKQYKISPQRFSFEVIENIAIDDYKTACKNFCLLKKEGISVEIDDFGSGYSSLSYL 685

Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              P   +K +   +      +   I R+II +A+++   +IA+ +  +     L +MGC
Sbjct: 686 AQFPITVLKIDSFFVQNIHHPREEKICRAIISLAESLNLKVIAEGVETKHQADTLYKMGC 745

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
              Q    + PL +  +L   K  
Sbjct: 746 YLHQGFLYSQPLSYEELLLKFKNH 769


>gi|94313385|ref|YP_586594.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans
           CH34]
 gi|93357237|gb|ABF11325.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains)
           [Cupriavidus metallidurans CH34]
          Length = 709

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 202/432 (46%), Gaps = 7/432 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E +   A  D LT +PNR    DR T  +  +A     R  V+ +D+D +K +ND  G
Sbjct: 274 ANEELEFLALHDKLTHLPNRVLLEDRFTLAIQAAARHHG-RFAVLFVDLDGFKGVNDTYG 332

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +LV +  R+   +   D +AR+ G+ F  +L+  +        A  +   +  P
Sbjct: 333 HQVGDGLLVEIANRLRASVSSEDTIARVGGDEFV-LLVHVDEPEDAGVVAGKLIDVLREP 391

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
            N+    + V+ SIG A +         ++ NA+ AMYHAK  G N    F   ++    
Sbjct: 392 ANVAGHMVHVSGSIGIAIYPVDGQDQDALMTNADAAMYHAKASGRNASYFFERSMNHQAR 451

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            + M+ +DL  A+ N +L L Y P     D  +VG EAL++W+HP  G +   +F+ +AE
Sbjct: 452 AQQMLIQDLRAALRNGQLQLHYQPKFSAADNVLVGAEALLRWNHPVQGLLMPDQFITLAE 511

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  I  ++L    R +  W D        + +N+++       + E +   +++  
Sbjct: 512 KTGAIVPIGTWVLNEACRQLALWHDM-GHAHWSMAVNLSALQFCHAGMVESVAEALARHK 570

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R+ L  +E+  M + E +  ++ +L ++G+ + +DDFGT  S L +L  IP   +K
Sbjct: 571 VEPRRLTLEITETTAMRDVETTLAIMTQLDEMGVRIAIDDFGTGYSSLLHLKRIPASELK 630

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +    E     AI+ +I+ + + +   ++A+ +        L  +GCD +Q   +
Sbjct: 631 IDRGFVRDLAEDSEDAAIVSAIVALGRTLNLQVVAEGVETTAQRSFLAGLGCDALQGYLL 690

Query: 941 ASPLGFNSILKL 952
             P+      +L
Sbjct: 691 GRPMPAAQFTEL 702


>gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 592

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 125/440 (28%), Positives = 231/440 (52%), Gaps = 5/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + + +   +L  A  D LT +PNR  F+D+++ ++      +N    V+ +D D++K +N
Sbjct: 149 QLQIANYKLLEMALHDPLTKLPNRALFMDKISLVIKSVKEGNNHGFAVLFMDCDRFKVVN 208

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L+++  RI ++LK  D+L+RL G+ F II+   N    + + A ++ + 
Sbjct: 209 DSLGHTVGDELLIAIGDRIQKILKNNDLLSRLGGDEFAIIVHDVNEIEPVRNLADSILEV 268

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++ P  +  REI +  SIG     S+      +L++A+ AMY AK  G      F   + 
Sbjct: 269 MSCPFQIYSREIFINMSIGVVLSNSNYEQPEHLLRDADTAMYRAKALGRGQYHIFDPAMH 328

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               D + ++ DL  A+EN EL   Y PII L   +I  +EAL++W HP+ G +    F+
Sbjct: 329 KEALDLLGLETDLRRAIENQELIPYYQPIINLETGKISSMEALVRWQHPQRGLVPPGMFI 388

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE+ +I  I   ML      + +W++Q      + + +N++ +     +L   +  +
Sbjct: 389 PLAEEMGIITTIGTLMLVEACHQLKNWQEQKLVDESVSMSVNLSVRQFTQADLIATVDDI 448

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++++  +P  ++L  +ES ++ N + +R +L + R   I L+LDDFGT  S LSYL   P
Sbjct: 449 LAESGLNPKCLRLEMTESAIVENTQTARTILTQFRDRHIGLSLDDFGTGYSSLSYLHAFP 508

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S ++      + + ++ +II ++K +    +A+ I     + +L  + C+  
Sbjct: 509 VDTIKIDKSFVSLLDGTPENLGLIPAIIGISKTLNMVAVAEGIETAEQLAQLRELECNSG 568

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + PL    + +LL  
Sbjct: 569 QGYFFSRPLPATQMAELLAS 588


>gi|78060223|ref|YP_366798.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77964773|gb|ABB06154.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 780

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 139/752 (18%), Positives = 293/752 (38%), Gaps = 48/752 (6%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
              L  IS  +      +      L +    +    + + ++                 +
Sbjct: 41  VSYLILISSTWSLAITHLRSTPWWLSVAIPAAMTLAALARLLHWHR---TRLLEPTPDTV 97

Query: 286 TFSGIACIAILFCMSFYYPMVTASIA---RITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
             +      ++  ++  +      +         + V +Y    +   +           
Sbjct: 98  MRALTVTNWLVVPVAVTFTTWALLLFPYGDAWQKAQVAFYLAITVIGCIFSLMYLRTAAL 157

Query: 343 AWILIFIWFIGLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           +  +I      ++   T +  L    +  A V   ++ VI + +      +     S+  
Sbjct: 158 SVAVIVNVAFIVFFISTGQPTLVATAVNMAFVSAALIAVISVNYRGFLRTVDAQAESRMR 217

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPD-------IATILGLASGSMHGPIRNW 452
                R    +      V   D    R+             I  +L + +    G   ++
Sbjct: 218 EQAQTRLMRMIDDMPVAVMTADPETFRINYLNATSRNLLRTIEHLLPIRADDALGASIDF 277

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             + H   +                      R R        + I++  + +++G  +  
Sbjct: 278 F-HPHPQHQRRLLA----------DPANLPHRARIGLGPEV-LDIQVSAVRDADGRYIGP 325

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +   + +T+Q ++   I   A  D+LTG+PNR +FL      L  S    +    ++ ID
Sbjct: 326 MLSWSIVTQQAEAEARIHQLAHHDSLTGLPNRATFLAEFDASLRRS----DKVLGLLFID 381

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIA 631
           +D +K IND  G + GD+VL  +  R+  +  +   +L R+ G+ F ++L    ++ +  
Sbjct: 382 LDGFKLINDACGHSAGDEVLRQVGERLRGQCPEPGMMLGRIGGDEFAVLLRD-TDADRAM 440

Query: 632 DFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A  +  ++  P     +R+  + ASIG             +L  A++A+Y AK  G  
Sbjct: 441 GAAARLVDTLVAPYAPSPDRQFRIGASIGCVLAPDHGNDGGVLLSRADMALYAAKKAGKG 500

Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHP 747
               F         +RV ++  L +A++ ++ LY+ Y PI+ +   +I   EAL++W HP
Sbjct: 501 TYRMFSPDMETSAQERVALESKLRVALDENQGLYVFYQPIVDVRTRQITTREALLRWHHP 560

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G IS   F+ +AE   +I  +  F+LE+  R+   W D        + +N+++  L  
Sbjct: 561 RAGWISPGRFIPVAERGGLIDRLGRFVLEQACREAARWPD-----GARVAVNVSAGQLGH 615

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +     A ++    +P R+++  +E+ ++ +  ++   L  LR +G+ + LDDFGT  
Sbjct: 616 GTIVPTFAAALAGAGLTPDRLEIEVTETALLHDEGKAIADLRALRSMGVRVALDDFGTGF 675

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L++L   PFD +K +GS +    +     A++R++  + K +  T +A+ +  E  + 
Sbjct: 676 SSLAHLRAFPFDKIKIDGSFVRDAVTRPDCAAVVRAVADLGKRLGVTTVAEGVETEEQLA 735

Query: 926 ELTRMGCDYIQDSHVASPLGFNS---ILKLLK 954
            +T  GC  +Q   +  P         ++ ++
Sbjct: 736 CITDAGCREVQGFLIGRPAPGEQDAPAIRWIE 767


>gi|241203649|ref|YP_002974745.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857539|gb|ACS55206.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 781

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 235/440 (53%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  + I   A  D+LTG+PNR    +RL +ILD +  ++  + TV  ID+D +K IN
Sbjct: 342 ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNR-KVTVAYIDLDNFKDIN 400

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D  G A GD+VL  +  R+   ++  D++ RL G+ F ++L+ +++    I      ++K
Sbjct: 401 DGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQK 460

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVS 698
           +I  PI   + EIT+T+SIG A++     TS E+L NA+ AMY AK  G N        S
Sbjct: 461 AINRPIRGADGEITITSSIGVAAFPFDGATSEELLANADRAMYRAKELGRNTLQHHEGGS 520

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +     +   E+L  A+   +L+L Y P + +    I GLEAL++W+HP  G +    F+
Sbjct: 521 TPVGMPLGEHEELHQAITGDQLFLQYQPQVDVATGRITGLEALVRWNHPAKGRVPPVNFI 580

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L++L    R    W+D     P+ I +N+++K   D +    +   +
Sbjct: 581 PLAEETGLIVPLGLWVLNEACRQARQWQDMGLA-PLTIAVNVSAKQFADPDFATHVAEAL 639

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +ESVVM N ER+  ++  LR +G+ L++DDFG+  S L+ L   PF
Sbjct: 640 ERHRLQSRWLELEVTESVVMQNAERALAMMETLRGLGVRLSIDDFGSGYSSLAALKTFPF 699

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+      +   AI  ++I +A+ ++ +++A+ +  +  +  L +  C+  Q
Sbjct: 700 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRQAHCEEAQ 759

Query: 937 DSHVASPLGFNSILKLLKER 956
               + P+    I  LL+ R
Sbjct: 760 GFRFSKPVSPEEIPALLRAR 779



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 19/177 (10%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
                 AL      IV      +           + +     R    V    D ++  D 
Sbjct: 24  RWESTDALTAETRRIVAATEAMMASTAHHLSEGIENL-----RLKEIVHELPDFLYVKDR 78

Query: 424 VRDRVTTTPDIATILGLASGSMHG-----PIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
               V      A+ LGL S ++        + ++   +H  D +         +     R
Sbjct: 79  DSRFVFANTVTASSLGLESAALITGKRDFDLFDFETALHHFDIE------QQIMTTGEAR 132

Query: 479 LQYEFRVRAADNQFHWMII--RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  E            +       P+ N  G+I+  IG++ DITE+K+  +     A
Sbjct: 133 IDMEESYVFP-GSRRPICRLTSKIPLRNDRGEIVGLIGVSRDITERKRQEDLHRGQA 188


>gi|77919908|ref|YP_357723.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77545991|gb|ABA89553.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Pelobacter carbinolicus DSM 2380]
          Length = 874

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 145/632 (22%), Positives = 277/632 (43%), Gaps = 20/632 (3%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            RA +L      +    IG  ++                 L+++ ++ G  ++       
Sbjct: 238 IRARVLFRDIFGVPAAVIGTNLSRDIYAQGLQSIIYFHIWLLVVSLMAGVCILVIWDRLA 297

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q               S D  +  +     V        +LG     +     +W  
Sbjct: 298 GSRQRQRDSEHLFQHLFQFSADAFFLCEEQGRFVDVNHQSCAVLGFDRQKLL--SLSWSD 355

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                D      +  +        +  E        +     + +  +   +  +L ++ 
Sbjct: 356 I---TDAAIGNLLSRTQRLSTAAPVPMEATFTGNRGRTFVGDVSVTHLEIQD-QVLFFV- 410

Query: 515 IANDITEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  DITE+K +          +   A+ D LTG+PNR   ++ L T +  +   D     
Sbjct: 411 LVRDITERKAADTMLRKQKARLNYLAYHDVLTGLPNRLKAIELLQTYIGRANQRD-TMVA 469

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V++ D+D++K +N+ LG   GD++L+ + RRI E+L+  D++AR  G+ F ++L    +S
Sbjct: 470 VLIFDLDRFKNLNESLGHETGDEILMEVARRIQEMLRDTDVVARFGGDEFLVLLEHVADS 529

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +   A  + ++IA P+ + E++  +T SIG + +      +  +LK A+ AMY AK +
Sbjct: 530 TGVKHVAEKLLEAIAQPLRIGEQQFYLTGSIGISLYPKHGENAQTILKAADSAMYFAKEQ 589

Query: 688 GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F    +    +R+ ++ DL  A+   +  L Y P   L   ++  LE L++W 
Sbjct: 590 GRNTYRFFIPSINVEVEERLYLETDLRQALNLEQFMLFYQPEFNLHTGKVECLETLLRWQ 649

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HPK G +   EF+ +AE+  +I  I  ++L+   R +I+WR+Q   P I + +NI+++  
Sbjct: 650 HPKRGIVGPGEFIPLAEDTGLIVPIGEWVLQEACRQVIAWREQGL-PSIRVAVNISARQF 708

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +   E +  ++ +   +   ++L  +ES V+ + E +  +   LR+ GISL +DDFG 
Sbjct: 709 RQSGFIEMVFRVLKQYGLAAEWLELEITESFVIQSAEHALNMFKVLRQSGISLAVDDFGQ 768

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PF  +K + + +    +     AI  +II M  ++   ++A+ I     
Sbjct: 769 GYSSLSYLRKFPFTKLKMDRAFVKNVVNDPHDEAIAAAIIAMGDSLGQEVVAEGIETREQ 828

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  L  +GC   Q  ++A P+    + + L+ 
Sbjct: 829 LDTLRTLGCPCGQGYYLALPMEGPKMAEFLQR 860


>gi|330899691|gb|EGH31110.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 972

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 125/440 (28%), Positives = 233/440 (52%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   +   A  D+LT +PNR    + L  I+  + +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++  S  +   I   A  +  
Sbjct: 580 DTMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHSVYSESLIKSLATQVVD 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  ++I V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +    
Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDARM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+E  E  L + P + L+D  I GLEAL++W+HP+ G IS ++F
Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLVDGRISGLEALLRWNHPEQGMISPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++ ++   + SW        + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKSWEKNNIRL-VPIAINLSVRQLQVKGLAETVKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     SP+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEAYGISPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+       ++K 
Sbjct: 939 QGYLFSKPVISEECAAMIKS 958



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 75/246 (30%), Gaps = 14/246 (5%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
            +  +SF    + A +  + + + +    + +I   + G+     L     L        
Sbjct: 139 GVMRLSFNAERIAAELYSLVIQATLFAGFFLLISLTLMGFMIKRSLAHLGKLHSYEAEIA 198

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             A+       ++       +   +  +  T        G   + + +   +   A+   
Sbjct: 199 SGAVA---AEAMLVADAPMEIQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEV 255

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG- 473
             IV +               T    +   +          + I++     +  +     
Sbjct: 256 S-IVCEMSASGRITYVNERFVTSSQHSRAELLE--------LTIDEVWTGMSSANESWQW 306

Query: 474 -YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E R+     +  W    + P+ +  G + +YI I  DIT++K+    IL N
Sbjct: 307 APENEVWNGEVRLAGRTGKVAWHRRTVIPILDDLGGVEKYICIDIDITDRKEFEVAILDN 366

Query: 533 AFQDNL 538
           A + NL
Sbjct: 367 ARRQNL 372


>gi|308188099|ref|YP_003932230.1| hypothetical protein Pvag_2621 [Pantoea vagans C9-1]
 gi|308058609|gb|ADO10781.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 715

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  DNLT +PNR    DRL   ++ +   +  +  +M +D+D +K +ND  
Sbjct: 254 EANRELAQLALHDNLTRLPNRILLEDRLEQAINKANR-EQTQFALMFMDLDGFKAVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV +T R+ + +     LARL G+ F +++   ++    A  A  + K++  
Sbjct: 313 GHHIGDSLLVGVTERMSQQMTGYYTLARLGGDEFVLLIE-IDDPNDAAAIADKLVKAVDR 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P ++   E+ V+ S+G A +    +   E++ NA+ AMYH K+ G N    F+  ++   
Sbjct: 372 PFDISRYELVVSLSLGIAVYPGDGVDERELMFNADAAMYHTKNNGRNGYTFFQPSMNIQA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL  A+EN EL L Y P        I+G EAL++W HPK G +S  +F+ +A
Sbjct: 432 QSQLQLNNDLWHALENDELRLFYQPKYCAPRGPILGFEALLRWQHPKRGLLSPDKFLPMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  MI +I  +++    R +  W  Q   P   + +N+++     + L E +   ++K 
Sbjct: 492 EKTGMIVSIGNWVIHEACRQLRQWHLQ-GHPDWSVAVNLSALQFEQSNLVETVVDALAKH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E+  M +P+ S  +L  L ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 551 QIPAELLTLEVTETTAMRDPDESVRILTELTQLGVKASIDDFGTGYSSLLYLKRLPASEL 610

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +   I+ +I+ +A++++  ++A+ +        LT +GC+ +Q   
Sbjct: 611 KIDRAFVNELQHQKEDATIVSAIVALAQSLQLKVVAEGVETAEQQAFLTSLGCNTLQGYL 670

Query: 940 VASPLGFNSILKL 952
           +  P+    +  L
Sbjct: 671 LGKPVPPERVPDL 683


>gi|220933226|ref|YP_002512125.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994536|gb|ACL71138.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 806

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/566 (21%), Positives = 234/566 (41%), Gaps = 14/566 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-I 449
           L T      ++ + ER  + +   GD V   D         P    + G  +    G  +
Sbjct: 225 LRTARVEADLYREKERAQVTLHAIGDAVITTDTQGLVDYLNPVAEHLTGWRNHLARGRSL 284

Query: 450 RNWLPYIHINDRDNFRT-ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                  H    D     ++ +        L     + + D +   +     P+ + +G 
Sbjct: 285 AEVFRTFHEGSGDPVPHPLIHAVPDATASSLHQGVVLVSRDGREFAVEEVSAPIRDRDGH 344

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++    +  D+T+ ++    +   A  D+LTG+ NR  F  RL  ++  +  +      V
Sbjct: 345 VIGAALVFRDVTQAREMARKLSWAATHDSLTGLVNRAEFERRLDLLVTTARQEGRGH-AV 403

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +ND  G A GD++L  LTRR+   L+  D LARL G+ FG++L       
Sbjct: 404 LFMDLDQFKLVNDTCGHAAGDELLRQLTRRLQGQLRDNDTLARLGGDEFGVLLEGCP-ME 462

Query: 629 KIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           +    A  +R ++A       E+  TV   IG A       + + ++ +A+ A Y AK +
Sbjct: 463 RAGQIAETLRATVAEFRFQWQEKIYTVGVCIGVAPIDEHIKSVASLMSDADAACYLAKEQ 522

Query: 688 GGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           G N +   +       R        + +  A+E     L +  I+ +   E    E L++
Sbjct: 523 GRNRIHIIQHGDQALSRRQGEMSWVQRINEALERDRFCLYHQHIVPVSGNEPPHTEVLVR 582

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I+   F+  AE   ++ AI+ +++ R+   +         P     IN++ +
Sbjct: 583 MLDEDGAIIAPMAFIPAAERYGLMPAIDRWVIARVLNHLRI---PGPRPHGLYAINLSGQ 639

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L DN++ + +  ++++T   P R+    +E+  + N  ++   +  LR +G    LDDF
Sbjct: 640 SLCDNQMLDFILDMLARTGVEPGRVCFEITETTAIANLTQAERFMSALRNLGCRFALDDF 699

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S   YL  +  D +K +GS +    E     A++ SI  +   +    IA+ +  E
Sbjct: 700 GTGMSSFGYLKQLKVDFLKIDGSFVRDMNEDPINRAMVESINHIGHIMGIQTIAECVAHE 759

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFN 947
             +  L  +G +Y Q   +  P    
Sbjct: 760 AVMDHLKAIGVNYGQGFGLHMPAPLE 785


>gi|288919235|ref|ZP_06413571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EUN1f]
 gi|288349330|gb|EFC83571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EUN1f]
          Length = 703

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 137/579 (23%), Positives = 247/579 (42%), Gaps = 26/579 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                 A     +       R +  V G+   V   D     +  +     ILGL++   
Sbjct: 128 RRADRGALVRAERERRISQSRLNAIVNGAALGVLVVDRAGRILEASDVALDILGLSTHR- 186

Query: 446 HGPIRNW--LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             P  +W     +H  DR+    +       R GR + E R+   D    W+++ +    
Sbjct: 187 --PPVSWPLHEIVHPADREIVARLWQEA---RHGRSRGECRILRPDGTPMWVVMTLSTTQ 241

Query: 504 NSNGDILRY-IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              G    + +    DITE+ +  E +  +A  D LTG+ NR +FLDRL T    +    
Sbjct: 242 AGAGAGGWFGVATLEDITERHRLQEEVRFHARHDPLTGLANRAAFLDRLETAFREAG--P 299

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---ILARLSGNRFGI 619
           + R  +  +DID++K IN+  G   GD +LV + RR+  ++  P     +AR+ G+ F I
Sbjct: 300 SARIGLCFLDIDRFKMINEGFGYEAGDQLLVEVARRLDRVVAAPGSVPTVARMGGDEFVI 359

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++       +I   A     ++  PI + ER++ +T SIG      +     +++  A+ 
Sbjct: 360 LVPDSAGLDEITAIARRCLAALRDPIRVDERDLPITCSIGVVEMAVADTRPGDLVAAADA 419

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           ++  AK  G N   +F       +     +   +   +   E  L Y PI+ L D  + G
Sbjct: 420 SLTWAKRGGKNQWTAFDPDRGTREATRGLLSRSMSPGLARGEFSLAYQPIVDLRDATMAG 479

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++WDHP  G     EF+ +AE+   I  +  ++LER       W        +F+ 
Sbjct: 480 AEALLRWDHPHLGPTRPGEFIDLAEDSGFIVELGQWVLERACEVARDWPAH-----MFVS 534

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ + L +  L + ++ ++++T     R++L  +ESV+M +  R    L  L  +G+ 
Sbjct: 535 VNLSGRQLREPGLVKVVERILARTGLPAQRLQLELTESVLMDSGGRQVGALHELNALGVR 594

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-----KRIAILRSIIPMAKNIETT 912
           + +DDFGT  S  +YL  +P   +K  G  +    +     +   ++ +I+  A+ +  +
Sbjct: 595 IVIDDFGTGWSNFAYLSTMPVRGLKLAGLFVAKLGKGTEPSRDDHLVEAIVEFARKLRLS 654

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + A+ I        L   G D  Q      P+       
Sbjct: 655 VTAEGIETSEQAAALRAFGADLGQGHLFGEPVSAGEFAA 693


>gi|293603221|ref|ZP_06685654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Achromobacter piechaudii ATCC 43553]
 gi|292818452|gb|EFF77500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Achromobacter piechaudii ATCC 43553]
          Length = 870

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 117/483 (24%), Positives = 231/483 (47%), Gaps = 29/483 (6%)

Query: 500 RPMSNSNGDILRYIGI--------------ANDI--------TEQKKSLEGILCNAFQDN 537
            P+ +S+G ++   G                 D+         E++++   I   AF D 
Sbjct: 391 SPIKSSDGRVIGTFGFYFRERRLPDDFHHRLVDVCVYLCALALEREEARARIRQLAFYDE 450

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR   L +    +  +   +  R  V+ +D+D++K++ND LG  +GD +L  + +
Sbjct: 451 LTGLPNRNLLLAQAEQSIARAEP-ERKRVAVLFLDLDRFKQVNDTLGHPIGDALLRDVAQ 509

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+  L +  DI+ RLSG+ F +++       ++   A  +  ++A P ++    +  + S
Sbjct: 510 RLCRLARATDIVGRLSGDEFVMLMPDF-EHGRLTAAAEHILVALAQPFSVGGVTLNPSVS 568

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAV 715
           IG + +  +      +L++A++AMY AK  G N +  F   ++    +R+ ++  L  A+
Sbjct: 569 IGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFSAEMNRQAQERLALEAALRDAL 628

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E   L L Y P + L +  + G+EAL +W HP  G+IS   F+ +AEE  +I  +  + L
Sbjct: 629 EAKALRLHYQPQVGLKNGSLYGVEALARWRHPTLGDISPVRFVPLAEECGLIGDLGDWAL 688

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                 +  WR      P  + +N+++ +  +  L   + A +++   +P+ + L  +E 
Sbjct: 689 REACSQLAIWRSNGLRVP-SVSVNLSATNFHNLNLPRMIAATLAEFGLAPADLMLEITEG 747

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           VV+     +   +  L ++G+ L++DDFGT  S L +L  +  D +K + S + G     
Sbjct: 748 VVLDATAGTLRTIAELHRLGVRLSMDDFGTGYSSLGHLRRLIVDELKLDRSFVQGLESDD 807

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              A+  ++I + +++   ++A+ +  E   + L   GC   Q    + PL    + + L
Sbjct: 808 AARALTSAVIRIGESLSLPVVAEGVENEEQRRFLIEQGCAAGQGFLFSPPLPAGELEEWL 867

Query: 954 KER 956
           + R
Sbjct: 868 RGR 870



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 4/141 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS- 442
            + +  V            +     L +  +G+ V         V        +LG A  
Sbjct: 137 ISRVSVVSRKSIADAERQEEVRLLLLGINETGNAVAVSGCDGRIVYVNDGFQRMLGFARG 196

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +++  +   L     +     R  LD  +  R G    +  V     +  W+ +    +
Sbjct: 197 DALNQELGELLAGGRPD--GGTREELDRRIACREG-FHKDVLVYDRYGKPLWVSVMANSV 253

Query: 503 SNSNGDILRYIGIANDITEQK 523
            +  G ++  + +  DIT  K
Sbjct: 254 FDERGTLVNIVDVLTDITPTK 274



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 28/238 (11%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            L+   +       Q  +++       +      +        +++D+D     +    +
Sbjct: 4   ELLFSGMEPLMLDTQASVSSAGPQGAAWHADNYLASMDRA--LLLFDFDADGALLKVNAN 61

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQ 491
               +G           + L      D        +       R        R R  D  
Sbjct: 62  FLAAVGYTREEALSLRHDML--CDSMDEGKGIASGERIWTRLRRGEHFSGTCRYRMKDGS 119

Query: 492 FHWMIIRIRPMSNSNGDILRY-IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
             W+     P+ + +G I R  +     I + ++  E  L                 ++ 
Sbjct: 120 SLWIEATYLPLGDKDGKISRVSVVSRKSIADAERQEEVRLLL-------------LGINE 166

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
               + +S  D      ++ ++ D +++   +LG A GD +   L   +         
Sbjct: 167 TGNAVAVSGCDGR----IVYVN-DGFQR---MLGFARGDALNQELGELLAGGRPDGGT 216


>gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300075391|gb|ADJ64790.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 695

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 214/437 (48%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + E +      D LT +PNR    DRL   ++ +A +      +M +D+D +K IND L
Sbjct: 257 AANEELTQMVLHDQLTRLPNRTLLEDRLNQAINKAAREQG-HFALMFMDLDGFKAINDSL 315

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +LV + +R+    +  D +ARL G+ F  IL+  N        A  + +++  
Sbjct: 316 GHHVGDRLLVEVAQRLTSSSRANDTVARLGGDEFV-ILVDLNTPEDAMGVAEKLVEAVNQ 374

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P  + + E+ V+AS+G A +     T  +++ NA+ AMYH K  G N    F  S   + 
Sbjct: 375 PFKVDQHELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRSGRNGYHFFEPSMNANA 434

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++   +DL +A+E  +  LVY P   L    ++G EAL++W+HP  G ++  +F+ +A
Sbjct: 435 QQQLQWLQDLRVALERGQFRLVYQPKFSLPAGPVLGAEALLRWEHPVHGLVAPDQFIGLA 494

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I  ++L+   R +  W          + +N+++    D  L E ++  + + 
Sbjct: 495 ERSGLILPIGAWVLDEACRQMREW-FALGYVDWTMSVNLSALQFADPHLLEVVRTTLERH 553

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +ES  M + E S   L ++  +G+ +++DDFGT  S L YL  +P + +
Sbjct: 554 QLPPPCLTLEVTESTAMHDTEASLQTLRQIADLGVEISIDDFGTGYSSLLYLKRLPANEL 613

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +    +     AI+ +I+ + + +   I+A+ +        LT  GCD +Q   
Sbjct: 614 KIDRGFVRELRQDGEDAAIVSAIVALGRTLNLRIVAEGVETVEQQDFLTAAGCDALQGYL 673

Query: 940 VASPLGFNSILKLLKER 956
           +  P+     L+ ++ER
Sbjct: 674 MGRPMTPELFLQTMRER 690


>gi|239908282|ref|YP_002955023.1| putative signaling protein [Desulfovibrio magneticus RS-1]
 gi|239798148|dbj|BAH77137.1| putative signaling protein [Desulfovibrio magneticus RS-1]
          Length = 765

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 129/596 (21%), Positives = 254/596 (42%), Gaps = 12/596 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
                      +   +     +Q +         +  + +  +  +     +++ ++   
Sbjct: 169 FWGQVCTSVATINGDVQVIVNLQDISEHKRAEHILIEERKFTNAVLESVPGLLYLYNDEG 228

Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
             +       TI G +   +    + +W        +    + ++  V       + +  
Sbjct: 229 LLIRWNKQHETITGYSGQELAQMHLLDWYKG-DELTQKKITSAINRVVKDGSATEEAD-- 285

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           ++               +    G  L ++G   DITEQKK  + +L  A  D LTG+ NR
Sbjct: 286 LQTKTGARIPFYFTAVSL-EIEGK-LYFVGTGIDITEQKKLEQQLLFRALHDPLTGLANR 343

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
              +DR++   +  + + N    V+ ID++ +K IND  G   GD VL  +  RI    +
Sbjct: 344 VLCMDRISQASERLSRNPNHEFAVVFIDLNNFKSINDSFGHEAGDQVLCEVANRIHGCAR 403

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D + R  G+ F I+L   N    I      ++  +     +    + ++AS G A   
Sbjct: 404 KTDTVCRYGGDEFIILLTEINKPDTIEAI-HRIQCVLKTYFVVNTHILQISASYGIAYGE 462

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYL 722
           + K +  ++L+NA +A+++AK+     +  F           + ++ D+   +E  E ++
Sbjct: 463 NEKQSPEDLLRNANIALHNAKNSPSEKIIVFENGMHELAMRNLSLQNDMRRGLEAHEFFI 522

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           VY PI  L   E+ G EAL++W HP+ G +S  EF+  AEE   I  +  F L +   D 
Sbjct: 523 VYQPIFFLSTGELYGFEALLRWSHPQRGIVSPGEFIPAAEESGFIYELGNFALTKACNDF 582

Query: 783 ISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
                 +     I + +NI++K L  + L + ++  I K+   P  + L  +ES +M  P
Sbjct: 583 AKLLKTSPKDNEITLSVNISTKQLAKDNLIDIIEYAIGKSGLPPGLLILEITESSIMEYP 642

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
           ++S  ++  ++  GI + +DDFGT  S +S L  +  D +K + S +     + +   I+
Sbjct: 643 DKSAKIIDAIKSKGIGIAVDDFGTGYSSMSVLQKLKLDKLKIDMSFVNRLTESSEDCEIV 702

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           R+II ++ ++    +A+ I     ++ L  +GC+  Q    + PL    +  L+ +
Sbjct: 703 RAIITLSNSLHLQTVAEGIETSEQLQILRSLGCELGQGYLCSKPLDVKDLPLLITQ 758



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 69/201 (34%), Gaps = 12/201 (5%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV------LIVILIGFTVIQ 388
           + + ++    ++  +W +    A+     N I    L+          ++ I++   + +
Sbjct: 5   KPSRIVAIYAVVSALWILFSDRAVGILFSNSISTITLLSTFKGWLYIGIVSIILYAFLKK 64

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHG 447
           +        + +F   +R       + D ++  D    ++         +   A   +  
Sbjct: 65  YERENIEQQKILFESEKRFRTIFDSASDCIFIHDAKTGKIVDVNSRTCKVFRYAREEILA 124

Query: 448 -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +      I+   ++     +   +      L +E++ +  D Q  W  +    ++  N
Sbjct: 125 LDVGKISSGIYPYTQEEAVNKIHQTLNG--DMLSFEWQCKTKDGQVFWGQV-CTSVATIN 181

Query: 507 GDILRYIGIANDITEQKKSLE 527
           GD+   +    DI+E K++  
Sbjct: 182 GDVQVIVN-LQDISEHKRAEH 201


>gi|193222304|emb|CAL61559.2| conserved hypothetical protein; putative membrane protein; putative
           PAS/PAC, EAL, GGDEF domains [Herminiimonas
           arsenicoxydans]
          Length = 869

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 146/631 (23%), Positives = 278/631 (44%), Gaps = 23/631 (3%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG-FTVIQHVLATGYFSQGIFSDGERQ 407
              I        +  + +        ++    + G    I+ +         +  +    
Sbjct: 243 HSTIFSRHRTRHKDGHWVWLETRGYNMLHDSAINGLVFSIEDITLRKDVELKLQEETAML 302

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNW--LPYIHINDRDNF 464
              +  +  +++  D       +        G +S   + G       L   + ND+ + 
Sbjct: 303 RAVLDLNPSMIYVKDSEGRFTISNQVFQRRFGYSSEDELRGKTVYDICLKMANENDKFSA 362

Query: 465 RTILDSFVGYRRGRLQYEFRVR--------AADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           R I D      +  +Q    ++         +D    W      P+ ++  +I+  +G+ 
Sbjct: 363 REIADEIQQQDQQVMQTGIPLQDVEAPGFWHSDMHL-WFHTSKYPLRDARNNIIGILGVT 421

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT++K +   I   A  D LT +PNR+  ++ L T ++ S    +   T++  D+D +
Sbjct: 422 RDITKRKMTELQIEYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQS-SLTMLFCDLDFF 480

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  L+ +++RI  +L   D +AR  GN F I+  S      I   A  
Sbjct: 481 KSVNDTHGHDFGDQCLLEISKRIVAVLPESDFVARFGGNEFVILTNSSLAESSIKAKA-- 538

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + ++++  +      + +  SIG A  +      +++++ A+ AMY AK RG N  E + 
Sbjct: 539 IARAVSERLVFENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAKERGRNRTEIYD 598

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +          +   L  A+E +EL + Y P + L+D  + G E L++W+ P++G IS 
Sbjct: 599 AALQSKSTKHARMDVALRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISP 658

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEG 813
           +EF+ IAE   M+  I ++ +E+  R + +W+        I + +N++ + LL       
Sbjct: 659 NEFIPIAETSGMVVPIGMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQ 718

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++  +   P  I+L  +E+  M NP ++   L  L+ +G+ L LDDFGT  S L+YL
Sbjct: 719 VREILDSSGVVPHTIELELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYL 778

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + + + G    +    I+R ++ +A+ +    +A+ +   + I EL  MG
Sbjct: 779 QKLPIDILKIDKTFVHGLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMG 838

Query: 932 CDYIQDSHVASPLGFNSILKLL--KERFPLV 960
           CD  Q    + PL       L+    +FPLV
Sbjct: 839 CDLGQGFIFSPPLSAEEAETLICSSHQFPLV 869



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 92/317 (29%), Gaps = 23/317 (7%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
              +L Y ++ F  +  +         +      + L    I F+  +  W R    +  
Sbjct: 9   TASLLLYATLLFHIMLLVYAKHLSLTHVGMGTVVLLLVLLTISFIRYF--WLRTVILLSE 66

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
                   IA    +         ++    L +I   +   +       +  A+L I A 
Sbjct: 67  KFLLAEILIATCSIVVLAAQNTIPTLPMPWLIAIAGVFPLML------RHRIAMLCIAAL 120

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
            LI         A      + +        +  + +L+  T+  + +A         ++ 
Sbjct: 121 ALIGYRLNVYLGATA---SDWLPDLFATICIGWLSLLLAKTLNINRIALSQA----RTNE 173

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            R +     +  I    D         P +  ++G +   +        P +H +D +  
Sbjct: 174 RRFNAIARVTRHIFIITDADYQIKFANPALQEVIGYSYEEILHNAI--KPILHPDDEEEH 231

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---- 520
           +  L          +    R R  D  + W+  R   M   +  I   +    DIT    
Sbjct: 232 KEKLRHLRNTPHSTIFSRHRTRHKDGHWVWLETRGYNML-HDSAINGLVFSIEDITLRKD 290

Query: 521 -EQKKSLEGILCNAFQD 536
            E K   E  +  A  D
Sbjct: 291 VELKLQEETAMLRAVLD 307


>gi|302339735|ref|YP_003804941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636920|gb|ADK82347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta smaragdinae DSM 11293]
          Length = 834

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 159/846 (18%), Positives = 326/846 (38%), Gaps = 81/846 (9%)

Query: 169 NLPQIYLWEPNFYKDTVNSFTLYRGIIIGVAS---LLAIFLTIFYMVNRSSMLIPTFAMA 225
           +L  + +     Y    +S       + G  +   +L   LT+       ++   T    
Sbjct: 15  SLLIVVVLTSGIYFQRESSLLGNMIFMPGAVASFWMLFEALTLLSPHRNEAIFWATGWFL 74

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIW--RACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
             +L   ++ F F S   + P+G+  I        +    +  IF+            + 
Sbjct: 75  GFLLYQPALLFYFASFDEDRPTGKRRITAVIDLLFVIAGITYFIFMVRTTTLKAAENSLT 134

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
                 +             P    S   +     +      +          A      
Sbjct: 135 INPVGFL-----------PKPHYHFSWYILYFVLRITAQLRKMGKQLFANVSSAQWRRIL 183

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W  + +  + L +     +    + P           L+ F  +++       ++    +
Sbjct: 184 WFPLTVACMVLLLTDYLAMCGLPLLPIGQVASAAFFFLL-FAGVRYRFFFRPSARFAADE 242

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
                  +    D +   D              +   +   + G    +        R+N
Sbjct: 243 ------ILQTMPDPLLVCDTEGHIQVINNAFCKVFDYSPEEIIGKNLFFTEN-----REN 291

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI---- 519
            + +L++    +   L  E  +   +    +  + +  + + +      I    DI    
Sbjct: 292 RKVVLEAVREEQINGL--ERILYDRNGNPIYTSLSLSWLHDRDKARAGAIVAVQDIRNYH 349

Query: 520 ------------TE-----------------------QKKSLEGILCNAFQDNLTGIPNR 544
                       TE                       ++++ E +   A+ D+LTG+PNR
Sbjct: 350 HALDRLEDLYHRTEAMVQERTKELQETNLTLKNEIASRRQAQERLHHAAYHDSLTGLPNR 409

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F +RL  +       +     ++ ID+D++K IND LG   GD VL     R+   L+
Sbjct: 410 EMFTERLQLVFSKYMHRNGATFALLFIDLDRFKMINDSLGHLSGDMVLKETADRLENCLR 469

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE----REITVTASIGF 660
             D + R+ G+ F +++     S  +   A  + +S+  P  +       EI+ +AS+G 
Sbjct: 470 DVDTIGRMGGDEFVVLMEDIGESRAVITAAERIIESMKKPFCIRIENRVHEISTSASVGI 529

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENS 718
                  I + EML++A+LA+Y AK  G N  E F           + I+  L  A+++ 
Sbjct: 530 TIVNPRYINAEEMLRDADLALYRAKELGKNCYEIFNEDIQAGALAHMDIERGLRNALQHD 589

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  L Y PII L  + + G EALI+W HP+ G +  + F+ +AEE  +I  I+ ++L+R 
Sbjct: 590 EFELHYQPIINLATKSLAGFEALIRWHHPEKGLLHPASFIPVAEESDLIVEIDRWVLQRS 649

Query: 779 ARDIISWRDQANMPPI--FILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSES 835
             ++  W    +       + INI+++ L     L + ++  + ++  SP  + +  +ES
Sbjct: 650 CSELSQWHKALSFQQKLPSVSINISARHLAAGRKLIDDIKDTLKQSGLSPETLIIEITES 709

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
            ++ + + ++ +L +++ +G+ L LDDFG   S ++ L  +PFD +K + + +TG   + 
Sbjct: 710 AIIKSMDTAKTILNQIKGLGVGLHLDDFGEGYSSVNLLKNVPFDAMKIDRAYVTGMKREN 769

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +LR+I+ +  +++  +IA+ I    + + L    C++ Q    + P+    I   +
Sbjct: 770 PGSRLLRTIVELGHSMDKAVIAEGIEAPGEAELLKSFHCEHGQGFLFSKPIKSEDIGSYM 829

Query: 954 KERFPL 959
            E+FP+
Sbjct: 830 -EQFPM 834


>gi|152981019|ref|YP_001354994.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151281096|gb|ABR89506.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 563

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 133/558 (23%), Positives = 258/558 (46%), Gaps = 13/558 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           S   + S  +  +G++V   +   + +  +     ++G    S+ G        + ++DR
Sbjct: 8   SSENQLSSLMEIAGELVLRLNTRGEILHVSKRTDALIGH-GSSLAGMK--LFELVRLSDR 64

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 L   V  R    +   ++        W  +++    +++   +  +G  +DI+ 
Sbjct: 65  HAIEAALRQAVASREVT-RVSVQMATRA-VLRWYELQMIAYDDADEAAVLVVG--HDISG 120

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q+ + E +   A  D LTG+PNR    DRL   +  S   D     V+ +D+D +KK+ND
Sbjct: 121 QQATEERLRHMATHDELTGLPNRSLLADRLRMAIAQSRRTDRG-FAVVALDLDGFKKVND 179

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L     R+ E L+  D LAR+ G+ F  +L    + ++I + A  M  +I
Sbjct: 180 ALGHPVGDALLRVAAARLRETLRDVDTLARVGGDEFVAVLHGAVDEVEIHNVARRMIAAI 239

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SS 699
            +P  +    + V+ SIG A + +   T  ++L +A+ AMY AK  G      +     +
Sbjct: 240 QLPFEIDGNALYVSTSIGVAIYPAHGETDVKLLAHADSAMYRAKETGKARCIIYNHLSFN 299

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V ++  +  AV N E  L Y PI+     +I+G EAL++W  P  G +  ++F+ 
Sbjct: 300 QVEHDVTMEAAMFEAVRNGEFLLHYQPIVDAHTRQIMGFEALMRWMRPDIGLVPPNQFIP 359

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  +  + L+     +  + + A    +++ +N++ +    ++    M   + 
Sbjct: 360 MAENNGLINLLGAWALKSACVQLKRFEEAAGRQ-LYVSVNVSPRQFRSDQFLSMMDDALK 418

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +     ++ L  +E ++M +PE +  LL ++   G+ + +DDFGT  S L YL   P  
Sbjct: 419 LSGLDGDQLLLEITEGILMSDPEHAEALLAKITSRGVRIAIDDFGTGYSSLVYLKRFPIA 478

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +    +  K  AI   ++ +A ++    +A+ +  E  ++ L+  GC  IQ 
Sbjct: 479 ALKIDRTFIKDLPDSIKDAAICNVVLSLANHLSLLTVAEGVENERQMEFLSAQGCSLIQG 538

Query: 938 SHVASPLGFNSILKLLKE 955
            H   PL  ++++ +LK 
Sbjct: 539 FHTGFPLLPDALIDILKA 556


>gi|161525475|ref|YP_001580487.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia multivorans ATCC 17616]
 gi|160342904|gb|ABX15990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
          Length = 935

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 138/562 (24%), Positives = 253/562 (45%), Gaps = 15/562 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      +G+ +   D     V        I G A   + G     L    
Sbjct: 255 RRSAEELRLAAKVFAHAGEGILVTDAQGHIVNVNRAFTVITGYAREEVLGQTPRLLESDR 314

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++T+  + + +       E   R  +      ++ I  + +  G I  Y+ + +
Sbjct: 315 YDD-EFYQTVWQALLEH--DYWHGELWCRRKNGSQFAALLTISAVPDMQGHIEHYVAMFS 371

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K++ + +   A  D LTG+PNR    DRL   +  +     +   V+ ID+D +K
Sbjct: 372 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 430

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND  G AVGD +L  L+RR+ ++L+  D LARL G+ F  +L+    +         +
Sbjct: 431 EVNDQHGHAVGDKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPENSFSLPILDRL 490

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  A P+ + +    V+ASIG + +   +   + ++L+ A+ AMY AK  G N    F 
Sbjct: 491 IEVAAQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 550

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R+ R   +  + +  A+ N +  L + P + +   E++G EALI+W HP  G +S 
Sbjct: 551 SEKDRTLRTRHEGFDSIENALANGQFLLYFQPKVNMRTGEVLGAEALIRWQHPARGLLSP 610

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ I E   +   +  + +E     I  WR      P  I +NI ++ LL  +    +
Sbjct: 611 ASFIPIIENHPLGIDVGKWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 668

Query: 815 QALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++S+     P  ++L   E+  + +  +   L+    ++G+   LDDFG+  S L+YL
Sbjct: 669 RGMLSRHPRAQPQDLELEILETSAVEDFVQVSQLMTLCERMGLRFALDDFGSGYSSLTYL 728

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +   +         IAIL +++ +A++     IA  +      + L RMG
Sbjct: 729 KRLPAHLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAVGVESIQHGEMLLRMG 788

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C++ Q   +  P+  +   + L
Sbjct: 789 CEWGQGYAIGHPMPAHEFEQWL 810



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGL 440
             ++ +       Q + S   ++         +++ +    D        +  I  I G+
Sbjct: 115 GTVEDITDLKRVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSHFPYASARIREIYGV 174

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A   +          +H  DRD     + +  G        E+RV+  D +  W+     
Sbjct: 175 APEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEAS 233

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           P +  +G IL + G  +D+T +++S E +   A
Sbjct: 234 PEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 265



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 11/126 (8%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W  D+    +T + +   +LGL  G+       +L  IH  DR  F    D  +  + 
Sbjct: 22  GSWHLDLGSQLLTCSDEACRVLGLDVGAPIA-FERFLQCIHPEDRPLFERAWDGAMLGK- 79

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-------SLEGI 529
             L   +R+  +  Q  W+ +R     N++G      G   DIT+ K+            
Sbjct: 80  -SLDLRYRIV-SGGQVRWIHLRATFKGNASGQPRAADGTVEDITDLKRVEQALNSMRRQR 137

Query: 530 LCNAFQ 535
              A  
Sbjct: 138 EELASH 143


>gi|90419183|ref|ZP_01227093.1| putative diguanylate cyclase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336120|gb|EAS49861.1| putative diguanylate cyclase [Aurantimonas manganoxydans SI85-9A1]
          Length = 834

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 141/619 (22%), Positives = 261/619 (42%), Gaps = 47/619 (7%)

Query: 353 GLWMAITKRLDNDIIQPALVGGL----VLIVILIGFTVIQHVLATGYFSQG------IFS 402
                   RLDNDI+             L  +          +      Q       I  
Sbjct: 207 VAESIARGRLDNDILPRGHDETAQLMRALSTMQRSIGEHIDRIRELMAEQADNYDSHIAI 266

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              R   A+      +  ++     V      A + G     +   +      +      
Sbjct: 267 QNSRFEAALHNMTQGLCMFNGNERLVIFNRRFAEMFG----GLQIGVSARQVLLDPE--- 319

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               I         G   +E      D +      +         +   ++    D+T+Q
Sbjct: 320 ----IQHLLAPGPDGSFTHEL----PDGRMIATSRQAI-------EGGGWLDTFEDVTDQ 364

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            ++   +   A  D LTG+PNR  F DRL      +A       +V+ +D+D +K +ND 
Sbjct: 365 YRAQAKLSHMALHDALTGLPNRVQFRDRLEVATRTAA--GVANTSVLCLDLDGFKAVNDT 422

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L +   R+   ++  D++AR+ G+ F II ++ +  L  A  A  +  +  
Sbjct: 423 LGHPTGDALLRAAAARLLSCVRQGDLVARVGGDEFSIIQLAGDPHLAAASLAQRIVDAFI 482

Query: 643 MPINLLEREITVTASIGFASWTS-----SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            P  +  R I V  S+G             I +  ++KNA++A+Y AK  G      F  
Sbjct: 483 EPFPIDGRPICVGVSVGIFVTAEMAEAGRAIDADSIIKNADVALYRAKSEGRGTFRFFEP 542

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   R  ++ DL LAVEN E  L Y P + +  + + G EAL++W HP+ G +S +
Sbjct: 543 DMDAGLEARRQLELDLRLAVENEEFALFYQPFVDVERQVVTGFEALLRWHHPQRGLVSPA 602

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+  ++ +I  ++LE   R   +W  +     + + +N++     D  L + ++
Sbjct: 603 EFIPVAEDCGLMASIGAWVLETACRQAAAWPSE-----LAVSVNLSPVQFRDPGLADIVE 657

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A +++   +  R+++  +ES+++ +       L R R  GI +++DDFGT  S L YL  
Sbjct: 658 AALARAGLASERLRVEVTESLLLQHSATVLATLERFRDQGIGISMDDFGTGYSSLGYLSR 717

Query: 876 IPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            PFD +K + S +    + + +AI+R++I +++ ++ ++IA+ +        L R GC  
Sbjct: 718 FPFDKIKIDQSFVRNLDDRENMAIIRAVIGLSRAMDLSVIAEGVETAAQRDILLREGCRE 777

Query: 935 IQDSHVASPLGFNSILKLL 953
           +Q    + P   + + ++L
Sbjct: 778 MQGYFFSRPKPADELARML 796


>gi|304412313|ref|ZP_07393921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|307306097|ref|ZP_07585842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
 gi|304349348|gb|EFM13758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|306910970|gb|EFN41397.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
          Length = 706

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 232/556 (41%), Gaps = 8/556 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S  +  S + V+  D     +     +  I G ++  +      +L          
Sbjct: 153 KEILSTTLEESAEAVYITDTDDQILAVNKAMCRICGYSAEQLISKTPEFLEL---KSHHL 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                      +RG  Q E   R +D          R +   +G     + I +DI+ +K
Sbjct: 210 GEETECQIALKQRGFWQGETWKRRSDGSNFPAWQSSRKIITEDGAHYN-VNIFSDISTKK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A  D LTG+PNR      L   L+   TD      +M +D++ +K IND  
Sbjct: 269 LLETQLTTRAMYDTLTGLPNRFHLKQILNKALEKLKTDPLTLGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFES 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
           P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +   L  A    +  L Y  I+ L   + +  EAL++W         +++F+ + E
Sbjct: 449 LKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQTIAAEALLRWQKSPTEYYDAADFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I +I  ++LE+       WR         I +N++   L   +  + +   +    
Sbjct: 509 ETGLIVSIGQWVLEQACVQAAQWRAHN-QADFRISVNVSPLQLEHLDFIDQVINALEMAN 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE++RL L R++ +G+S+ +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +        E     +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNEVSGQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK-LLKER 956
            P   ++  +  L E+
Sbjct: 688 YPSSVDNFTQTFLTEK 703


>gi|89092412|ref|ZP_01165366.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89083500|gb|EAR62718.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Oceanospirillum sp. MED92]
          Length = 1010

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/574 (21%), Positives = 251/574 (43%), Gaps = 18/574 (3%)

Query: 388 QHVLATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           Q+VL     ++   +    +  +     + + +   +     V     +  I G     +
Sbjct: 425 QYVLRLVDITERKQVEQTLQLSASVFTHAREGILITERDGTIVDVNDALLQITGYKKEEV 484

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   +     H   ++ + ++ +      +G    E   +  +   +  ++ I  + + 
Sbjct: 485 IGQKPSLFSSGHHG-KEFYHSLWNDITE--KGYWSGELWNKRKNGDIYAQMLTISSVKDG 541

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +   ++ + +DIT  K+  + +   A  D LTG+PNR+  ++ L   +  +       
Sbjct: 542 ENE-GYFVALLSDITTIKEQQKKLELIANFDPLTGLPNRRHIIELLHEGMANAMKQMKT- 599

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  +D+D +K IND  G   GD +LV+L  R+ + +   DI+ R+ G+ F      E 
Sbjct: 600 LAVFYLDLDGFKDINDTYGHEYGDQLLVTLANRMSKAMGQQDIVGRVGGDEFIGAFFEEP 659

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHA 684
           N     D    + + +A PI +   ++ V+ASIG   +       + ++++ A+ AMY A
Sbjct: 660 N-SVFTDKLHHILEQLAKPIFVEGYKLQVSASIGVTLYPQQRSTDADKLVREADQAMYQA 718

Query: 685 KHRGGNHVESFRVSSFRS---DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           K  G N    F     +        ++ D+  A+E  E  L Y P + +   +I G EAL
Sbjct: 719 KLAGKNRYHFFDAEKDQYIRGQHQALE-DIRRALERGEFVLHYQPKVNMFTGQICGAEAL 777

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G I   +F+       +   ++ +++    + I  W        I + +NI+
Sbjct: 778 IRWQHPEEGLIMPGDFIPTISAHPLSVDLDEWVILTALKQIELWLHSGFD--IPVSVNIS 835

Query: 802 SKDLLDNELCEGMQALISK-TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
              L D+E  + ++ L+   +  + +R+ +   ES  + N   +   +   + +GIS +L
Sbjct: 836 PLQLQDSEFSKRLEKLLHTVSPAARTRLSIEVIESHALENMSTALNAIEESKALGISFSL 895

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S +SYL  +P + +K + S + G    ++ +AIL + I +AK  +  I+ + +
Sbjct: 896 DDFGTGYSSMSYLKRLPVEELKVDRSFVHGMLNNQEDLAILSATIGLAKAFDKKILVEGV 955

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             E   + L  +G    Q   ++ P+  +  ++ 
Sbjct: 956 ESEEQGQRLLSLGYQEAQGYFISKPISADQFIEW 989


>gi|323487913|ref|ZP_08093171.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
 gi|323398647|gb|EGA91435.1| GGDEF and EAL domain-containing protein [Planococcus donghaensis
           MPA1U2]
          Length = 760

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 225/441 (51%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++ +  +   A+ D LTG+PNR+ FL  L + +  +      +  V+ ID+D++K IN
Sbjct: 316 QLEEVIHQVEHIAYHDELTGLPNRRLFLKNLESSIATADESGK-KLAVVFIDLDRFKNIN 374

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L   +R+I E L+  D ++R  G+ F +IL +  +   I      ++ +
Sbjct: 375 DTFGHEFGDLLLQDFSRKISENLRSVDTISRQGGDEFTLILNNIQDEADITPTIHRIQAA 434

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               +++ ++E+ V+ SIG A +  +  ++SE+LK+A+ AMY AK +G N+ + F     
Sbjct: 435 FQHALSIKDQELHVSMSIGIAIYPDNGKSTSELLKHADSAMYSAKAKGKNNYQFFSDDMA 494

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++ +L  A+ N E  L Y P       EI G+EAL++W   +   IS + F+
Sbjct: 495 SVVSRKIALENELRRALANEEFLLHYQPQFNAHTREITGMEALVRWQTAEDEIISPAHFI 554

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  ++L         W D+ +   + + +N++    LD++L + ++  +
Sbjct: 555 PLAEETRLILPLGEWVLNTACEQAKLWHDKGHH--LKLAVNLSPLQFLDDDLLDMVKRAL 612

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T +  S ++L  +E+V + + + + L +  L+ +G++L +DDFGT    LSYL   P 
Sbjct: 613 DQTGFPASSLELEITENVAVDDIDLALLRMQALKDLGVNLAIDDFGTGYCSLSYLKKFPL 672

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K   S +          A++ +++ +   +  ++IA+ +  E  +  L  +GCD IQ
Sbjct: 673 TNLKIAQSFVRDMAINPHDEALVEAMVLIGHKLNMSVIAEGVETEEQLALLKELGCDEIQ 732

Query: 937 DSHVASPLGFNSILKLLKERF 957
               + PL  +   +LL +  
Sbjct: 733 GYLFSKPLTTDHFSQLLSKEL 753


>gi|83310203|ref|YP_420467.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945044|dbj|BAE49908.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 682

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/497 (24%), Positives = 229/497 (46%), Gaps = 11/497 (2%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   V     RL+        +         +    +  G+++        +TE  
Sbjct: 169 LLAAVRHLVTGPLTRLRN---SLHHNASVLMREPLVWSSRDELGEVVHAYNQL--LTEID 223

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A +D LTG+PNR+   DR+   + L+   +     ++  DID +K +ND L
Sbjct: 224 QRTEDIHQLANRDLLTGLPNRRLLEDRIGHAIALAGRQNR-SIALLFADIDNFKVVNDTL 282

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  RI ++++  D +AR  G+ F I++ S N++ + A  A  + ++I +
Sbjct: 283 GHKQGDALLRIIADRIHDIMRGMDTVARWGGDEFVIVVESLNSAGEAASVAEKLIETIGV 342

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L    + V  S+G + +       + ++KNA++A++ AK RG N    F  +     
Sbjct: 343 PVQLGSNLLRVGVSVGISMYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNARA 402

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +  +  L  A+  ++L L Y P I      + G+EAL++W  P  G +   EF+ +A
Sbjct: 403 LRRMDIEMALRQAIPQNQLELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLA 462

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I A+  ++L    R I  W  +     + + +N++ +  L  +  +G+  ++ ++
Sbjct: 463 EESDLIVAVGEWVLNEACRQIRDWEARGFGE-VAVAVNLSPRHFLHEKDVDGIFRIVDQS 521

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I++  +ES  M  PE+    L RLR  G  + +DDFG+  S LSYL  +P  T+
Sbjct: 522 GVRPDLIEVEVTESTFMHEPEKVIGYLNRLRDRGFGIAIDDFGSGYSSLSYLRRLPITTL 581

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +           I+R+II MA  +   +IA+ +      + L    C  +Q  +
Sbjct: 582 KIDRAFVMDIEHNADNAEIIRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGYY 641

Query: 940 VASPLGFNSILKLLKER 956
            + PL    +   L  +
Sbjct: 642 FSRPLPPADLEAQLVRQ 658


>gi|90423242|ref|YP_531612.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90105256|gb|ABD87293.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 794

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 141/576 (24%), Positives = 264/576 (45%), Gaps = 9/576 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +++   A       +    E+   A        W + +    +  +P+I  +L     S 
Sbjct: 200 LMEREQALRSTKAMLRQRSEQLLEAQHLGKIGDWSFRLGDKTLWWSPEIYQLLAYDPQSF 259

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                        +     +      +         + +V+  D     + I  + M N+
Sbjct: 260 RPERNAVTALYVGDSARRLQQAQAEVMRTGLVN-SVDIKVKRGDGSIGDLAITSKAMINA 318

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G I+   G   DI+ +K +   +   A+ D LTG+ NR  F   ++ ++  +    +  
Sbjct: 319 DGGIIGLSGTIQDISARKSAEAQLEKLAYYDPLTGLANRSLFHLEISELMVRNRRTGSDA 378

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              +++D+D +K+IND LG   GD++L  + + I + L   + L+RL G+ F I+L    
Sbjct: 379 AL-LLLDLDGFKEINDTLGHGAGDELLRKIGQLISQALGPGNFLSRLGGDEFAIVLSHPT 437

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              +I   A  +  +IA PI L   E  ++ SIG A       T +E+L++A+LA+Y AK
Sbjct: 438 PRSEIEQLATTLLAAIAGPIALERGEAAISTSIGIAMIPRDGSTLNEILRSADLALYRAK 497

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALI 742
             G      F   +S+    ++ +  DL  A+ ++  L + Y P I L  + + G EAL+
Sbjct: 498 EDGRGRYRFFEAGMSAAVQHKMALSRDLRAAITDNVGLSVHYQPQIELSSDRVAGFEALM 557

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G+IS +EF+ +AE   +I  + L++L   A     W D    PP  I +N+++
Sbjct: 558 RWSHPTLGSISPAEFIPLAESSHLICDLGLWILREAATQAKRWLDA-GEPPRDIAVNVSA 616

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLD 861
             +   +    +  ++  T   P  + L  +ES++  + E R R +L +L+++G++L LD
Sbjct: 617 AQIWHTDFVSDVVRVLEDTGLPPHLLCLELTESLLADHAEGRVRNVLMQLKRLGVTLALD 676

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL  +PFD +K +   + G   +E+   +L+ +I + + +  T++ + + 
Sbjct: 677 DFGTGYSSLGYLTQLPFDKLKIDRVFIDGIAGSERSRKLLQGVIALGRGLGMTLVMEGVE 736

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              ++  L    CD +Q    A P    + L   + 
Sbjct: 737 RAEEVDILLEFDCDVVQGFFFARPTVAATALDFARA 772


>gi|326404161|ref|YP_004284243.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325051023|dbj|BAJ81361.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 784

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 153/730 (20%), Positives = 280/730 (38%), Gaps = 34/730 (4%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL- 296
           F    V  P                 +L+     +    R    V    +        L 
Sbjct: 65  FAYGYVGKPRTASFFIFVILVSVSYGALVWLGQSWKRSQRKSKFVPNFHWGYCVTQFTLG 124

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
              +           +  LA I       +      G   A+  +  W  +        +
Sbjct: 125 AAWAGVVSAALPQADKDQLAQIYAILIGLVGTAVFAG--PAIYSLLFWTPLVFGSTIALI 182

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----L 412
             + + +   +        +  V +I  +  + ++     +  I    E   + +     
Sbjct: 183 LPSAQTNGATLIGIFSFYFLTFVSIIELS--RKMVEREVGTIRIAHHKEETEILLRDFQQ 240

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-----PYI-HIND-RDNFR 465
           G+ D  ++ D     V  +     +   +   M     N L       I H +D  D   
Sbjct: 241 GASDWFFELDRDLVIVNPSDRFCEVAQRSVTEMQISFHNLLLNGDGSIIRHRDDAIDKLM 300

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           T L+    +R   +   F       +  W  +  +P+ + +G  + Y G+  D+T+  +S
Sbjct: 301 THLEGHTIFRDAIVSIPF-----SGELRWWDLSGKPIFDESGSFVGYRGVGRDVTDLHRS 355

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E ++  A  D LT + NR+ F   L          D ++  ++ +D+D +K IND  G 
Sbjct: 356 RERVVYLARHDPLTSLLNREMFSIALEQF---PHDADAMQTAILCVDLDYFKSINDSFGH 412

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD++L +   R+   ++  D++ RL G+ F IIL        +   A  +   +A P 
Sbjct: 413 GVGDNLLRAAAERLRSCVRERDMVFRLGGDEFAIILPEV-ERSDVELIAKRIIDHLAQPF 471

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            +    +T+ ASIG A   S   + +     A++A+Y AK  G      F   +    S 
Sbjct: 472 RIRNLTMTIGASIGAAMLPSDANSPAGAHHCADIALYQAKVEGRGKFCFFDARTQDAISK 531

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ I  DL       +L+L Y PII L   + + +EAL++W HP  G I+ ++F+ IAE+
Sbjct: 532 RITIHTDLKSPAVRQQLFLEYQPIIDLRTGKPIAMEALVRWQHPVRGVINPTDFISIAED 591

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I   +++   R           P +   IN++ + L D  L + +  ++ K   
Sbjct: 592 SGFINVIGKHVIDMTCRSAALM-----TPNLEFAINLSPRQLRDEMLPDKISEVLRKNDI 646

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              RI    +E+ ++     S  LL ++R +G  + LDDFGT  S    L    FD +K 
Sbjct: 647 DGRRISFEITETCLLDVGGNSLGLLDKIRALGCRIVLDDFGTGYSSFRPLHNYDFDRIKI 706

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
             +L+     +  R  IL +++ M + I   +IA+ +  E     L  + C + Q    +
Sbjct: 707 AQALLDDVFLSPSRQIILETVVAMGQRIGIDMIAEGVETEQQAALLRSLDCPFAQGFWFS 766

Query: 942 SPLGFNSILK 951
            P+    +++
Sbjct: 767 RPISDTQLIR 776


>gi|327190711|gb|EGE57793.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 764

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 236/440 (53%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  + I   A  D+LTG+PNR    +RL  ILD +  ++  + TV  ID+D +K IN
Sbjct: 325 ERKRVHDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRNNR-KVTVAYIDLDNFKDIN 383

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D  G A GD+VL  +  R+   ++  D++ RL G+ F ++L+ +++    IA     ++K
Sbjct: 384 DGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAGIARRLRELQK 443

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  P+     +I VTASIG A++     T+ E+L NA+ AMY AK  G N ++    +S
Sbjct: 444 AINRPMRGESGDIAVTASIGVAAFPVDGATAEELLANADRAMYRAKQLGRNTLQHHDGAS 503

Query: 700 FRSDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + +++ L  A+   +L+L Y P + +    I G+EAL++W+HP  G +    F+
Sbjct: 504 TSVGMPLGEQEELHQAITGDQLFLEYQPQVDVATGRITGIEALVRWNHPAKGRVPPVNFI 563

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L++L    R   +W+D     P+ + +N+++K   D +    +   +
Sbjct: 564 PLAEETGLIVPLGLWVLNEACRQARAWQDMGLA-PLTMAVNVSAKQFADPDFASHVAEAL 622

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +ESVVM + ER+  ++  LR +G+ L++DDFG+  S L+ L   PF
Sbjct: 623 ERHRLQSHWLELEVTESVVMQDAERALAMMASLRALGVRLSIDDFGSGYSSLAALKTFPF 682

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+      +   AI  ++I +A+ ++ +++A+ +  +  +  L +  C+  Q
Sbjct: 683 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRQAHCEEAQ 742

Query: 937 DSHVASPLGFNSILKLLKER 956
               + P+       LL+ +
Sbjct: 743 GYRFSKPVSPEEATLLLQTQ 762



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 17/176 (9%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
                 AL       V      +           + +     R    +    D ++  D 
Sbjct: 7   RWESAEALTAETRRFVAATEAMMASTAHHLSEGVENL-----RLKAIIHELPDFLYVKDR 61

Query: 424 VRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILD---SFVGYRRGRL 479
               V      A+ LG  ++  + G     L      D +  R   D     +   + R+
Sbjct: 62  DSRFVFANAVTASNLGFGSAEEITGKRDFDLF-----DFEVARRHFDIEQQIMATGQARI 116

Query: 480 QYEFRVRAADNQFHWMII--RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             E  V                 P+ N  G+I+  IG++ DITE+K   +     A
Sbjct: 117 DMEETVVLP-GSPRPACRLTSKIPLRNDRGEIVGLIGVSRDITERKLQEDLHRGQA 171


>gi|83814875|ref|YP_444397.1| sensory box/GGDEF family protein, putative [Salinibacter ruber DSM
            13855]
 gi|83756269|gb|ABC44382.1| sensory box/ggdef family protein, putative [Salinibacter ruber DSM
            13855]
          Length = 1118

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 127/607 (20%), Positives = 248/607 (40%), Gaps = 14/607 (2%)

Query: 356  MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
            +     +    +Q A + G    V  I    +++V       + I    ER  L V    
Sbjct: 503  LKTNGSMTYWSVQAAPIYGEDGQVQQIT-ATVRNVTERKNREEKIRESRERWRLLVESHR 561

Query: 416  DIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGP-IRNWLPYIHINDRDNFRTILDSFVG 473
            D V    + +           + G +    + G  +  +        R      L +   
Sbjct: 562  DPV-QITVGKTIQYVNSSAVELYGASDPEEIVGRSVLEFATNDGPGARSEMDKALQAHQE 620

Query: 474  Y--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
               R     +E+ ++  D +   +      +        + +    D+T+Q++    +  
Sbjct: 621  ELLREEPPSFEYEIKRLDGERRVVEFYSVSIKYEGKQAAQTV--LRDVTQQRREEARLRH 678

Query: 532  NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             A  D LTG+     F +R    +D S  D      ++ +D+D++K IND  G  VGD V
Sbjct: 679  RATHDQLTGLYRDSVFRERAQQAIDASDEDKG---ALLYVDLDQFKSINDKNGHHVGDAV 735

Query: 592  LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
            L+    RI  +++  D + R+ G+ F +   S  +S      A  +   +  P  + +R 
Sbjct: 736  LMEAANRICSVVRDVDPVGRMGGDEFAVWSSSVTDSETAKTMAQRITLVLDQPYAVEDRC 795

Query: 652  ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
            + V AS+GFA           ++++A+ AMY AK      +     S+       ++ ++
Sbjct: 796  LQVGASVGFAVCDLEDQDIDGLIQDADAAMYRAKSSPDRSLSHHGPSAGSKKNTSLRAEV 855

Query: 712  CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
               ++ +E   ++ P++RL D  +VG E L +W            F+ +AEE  MI  I 
Sbjct: 856  RRGIDQNEFEPLFLPVVRLSDGNLVGFEVLARWRREDGNLDPPDVFLGVAEETGMISPIT 915

Query: 772  LFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +LE   R + S +        + +  N + ++    E  E ++ L+ +   +PS + +
Sbjct: 916  QSVLEEACRKVESLQQHRGPDLSVALSGNFSRQEFFREETHEFVRHLLEEYDLAPSNLTM 975

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +E ++    + +  ++ RLR +G+++ +DDFGT  S    L   P D +K +  L++ 
Sbjct: 976  EVTERLLENENQTNTAVVDRLRSLGVNVEIDDFGTGYSSFHSLLQFPTDGLKLDKGLISE 1035

Query: 891  S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            +  +E      RS+I MAK++   + A+ I     ++ L  +GC   Q    + P+    
Sbjct: 1036 TTASEDACVATRSVIEMAKSLGLRVTAEGIETTAQLEVLRDLGCPLGQGFLFSRPVPAGD 1095

Query: 949  ILKLLKE 955
            +  L+  
Sbjct: 1096 LPALIDS 1102



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V Q         Q + +  +R       +    W++D   D  T + +   ++GL   
Sbjct: 276 IVVQQDTTEQQRVQQAMRTQRDRLQRMQGVAQTGGWEYDPKSDSFTGSNEFYRLIGLPQS 335

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +     R +      + R   +T     +         E  + +A  Q   + +R     
Sbjct: 336 TNFDLERAF-QLYPPSVRGRVKTAAQRCLE-DGSPFDMEVPLVSATGQHREVRVRGSAER 393

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              G   R  G   DIT +K+  E  L  A 
Sbjct: 394 -EEGRTARMTGTIQDITTRKQ-REQHLRQAN 422



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 48/156 (30%), Gaps = 23/156 (14%)

Query: 402 SDGERQSLA---VLGSGDIVWDWDIVRDR-------VTTTPDIATILGLASGSMHGPIRN 451
              +    A      S +    +D+ +D            P    + G  +  + G    
Sbjct: 413 QREQHLRQANALFEHSQEGFLLFDLKQDEDEAEFVIQRVNPAYEQMSGRRADEVRGRS-- 470

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +  IH  ++             +     +E +++  +    +  ++  P+   +G + +
Sbjct: 471 -VRDIHGEEQGAEIASHLRRCAGQGEPKDWEMKLKT-NGSMTYWSVQAAPIYGEDGQVQQ 528

Query: 512 YIGIANDITEQKKSLEGILC---------NAFQDNL 538
                 ++TE+K   E I            + +D +
Sbjct: 529 ITATVRNVTERKNREEKIRESRERWRLLVESHRDPV 564


>gi|85712770|ref|ZP_01043814.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Idiomarina baltica OS145]
 gi|85693410|gb|EAQ31364.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Idiomarina baltica OS145]
          Length = 821

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 130/588 (22%), Positives = 264/588 (44%), Gaps = 25/588 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + V A        +S  +    AV  S + +   D              I G    
Sbjct: 238 AALARQVEAIAAERHAHWSKLKNLETAVDQSNECIIITDAKGQIEYVNKAFEWITGYQRD 297

Query: 444 SMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G   R     +    + +    L   +   +   + E   +  D + + +   I P+
Sbjct: 298 ELVGSNPRILKSGL---TQQSVYHELWDTLNQGK-TWRGELLNQRKDGRVYTVYSIITPV 353

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            N  G+   YI + +DITE+K   + +   A+ + LTG+PNR      +   L  ++ ++
Sbjct: 354 YNEQGECTHYIAVEDDITERKADEQRLHYMAYYETLTGLPNRLHMTQIIDQAL--ASLEE 411

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIIL 621
                ++++DID+ ++IND  G   G+ ++ +   R+ +  +   + LA L  + F ++ 
Sbjct: 412 GELGNLLLVDIDRLQQINDARGHEFGNRLVQAFAERMKQWTEQQGVQLAHLGADLFAVLF 471

Query: 622 ISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
             + +  ++A     +   A+   I  PI L    +T++A+IG   +      + ++L+ 
Sbjct: 472 PPQVSKREVAKEKLYETCEALLTVIRKPIPLDGDVLTMSATIGAVVYPQKGGNAEQLLRR 531

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AE A++ AK  GGNH   +R       +    ++  L  A++N EL L     +     +
Sbjct: 532 AETALHKAKRYGGNHFAVYRQQYGEEIKRQFDVERMLRHALKNDELDLYLQSQVD-ATGK 590

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +V  E L++W HP+ G IS   F+ IAE   +I +I+ ++L+R A+ + S     N    
Sbjct: 591 VVSAEGLVRWHHPEQGLISPGVFIPIAERSDLILSIDRWVLQRAAQILASKEIAENPIDA 650

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +NI+++  +  +L   +  L+    + P ++ +  +E V++ + ++   ++  L K+
Sbjct: 651 -LSVNISARHFVRGDLVHVVSKLLENYHFKPQQLMIEVTEGVLIEDTDKVIEVMRELSKL 709

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           GI  ++DDFGT  S L+Y+  +P   +K + S +    EK    A++ +I+ + ++++  
Sbjct: 710 GIRFSIDDFGTGYSSLAYIQKLPVSELKIDQSFVRSMGEKTTHDALVETILSIGEHLDLR 769

Query: 913 IIAKDIYGEIDIKELTRMGCD--YIQDSHVASPLGFNSILKLLKERFP 958
           +IA+ +  E + + LT   C    +Q    A P+        L    P
Sbjct: 770 MIAEGVETEHEARFLTER-CPTIVMQGYLFAYPVPAQE---WLASFSP 813


>gi|307308958|ref|ZP_07588641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|306900592|gb|EFN31205.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 770

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 162/737 (21%), Positives = 285/737 (38%), Gaps = 34/737 (4%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII-FLFMYLHWNRW 278
              A A  V  + +     L+    +P    +   + S     ++  + F       +R 
Sbjct: 34  AVCAFACGVGVWSTHFIAMLAYDGGIPIAYGVGGTSFSIAVAIAASWVAFSVGLAGTSRH 93

Query: 279 HAKVGYITFSGIACIAILFCM--------SFYYPMVTASIARITLASIVLYYTYFIIYHG 330
              VG +          +  M          + P  + +   +      L    F +  G
Sbjct: 94  APAVGGLLLGLGIAAMHVSGMRAIEVQGRVAFDPETSFAAVLLGTLIAGLALHSFQVLRG 153

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
           ++G   ++LL+ A I +  +     + +   L            L   VI    T+I   
Sbjct: 154 VRGLAASILLLVAAICVLHFTSMSGVVLIPDLSVAATHVFDPFWLAGGVIAASTTLILMA 213

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
               +  + +             S + +       + +      AT+ G     + G  R
Sbjct: 214 FGALFVDRHLTD----LKGLANASLEGMVILR-RGEVIEVNECFATLSGRKPAELVGRQR 268

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L       R        + +G   G  + E  +  AD  +  +    R +    G   
Sbjct: 269 RELFAEAPERRS------SNDLGAGEGASEGE--LLHADGGYVPVERLCRTI-EYKGRPC 319

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             I    D+T +K +   I   A  D LT + NR SF  RL   L  +   D+    V+ 
Sbjct: 320 DVI-FVRDLTARKDAERTIEHLAHHDALTDLSNRSSFDRRLRQALAAAVHHDDA-LAVLC 377

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D++K +ND+ G   GD +L  +   +       D +ARL G+ F I+          
Sbjct: 378 LDLDRFKAVNDIFGHGEGDRILRKVADILRAGAGEADTIARLGGDEFAIVQTGAAQPEAA 437

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  + K  +  ++     + V  SIG A       T+  +  NA+ A+Y AK  G  
Sbjct: 438 RLLADRILKLFSEEMDTRRDPMAVGVSIGVAICPGDGTTAERLYGNADTALYRAKQTGKG 497

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F          R  I+ DL  AV   +L+L Y P++ + D+ IVG EAL++W HP 
Sbjct: 498 IACFFDAEMDAAVRTRRQIENDLRHAVVRRQLFLEYQPLVDVRDDRIVGYEALLRWRHPD 557

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +  + F+ I EE   I  I  ++LE    + + W +     P+ + +N++    L  
Sbjct: 558 RGLVGPNLFIPIGEESGSIIQIGEWVLEEACSEAVRWHE-----PLPVWVNVSPVQFLLP 612

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +++++ +T   P R++L  +E+ +M N +     L RLR +G+ + +DDFGT  S
Sbjct: 613 NLFDRIESILMRTGLEPRRLELEITEAALMHNRDDVLATLVRLRLLGVRIVMDDFGTGHS 672

Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS L   PFD +K + S            AI+R+II +  ++   ++ + +  E   + 
Sbjct: 673 SLSNLQTFPFDKLKIDCSFTASLDKDPAAHAIIRAIIALGHSLNLPVVTEGVETERQRQI 732

Query: 927 LTRMGCDYIQDSHVASP 943
           +   GC  IQ      P
Sbjct: 733 IVDEGCRQIQGFLTGRP 749


>gi|311105671|ref|YP_003978524.1| RNase II stability modulator [Achromobacter xylosoxidans A8]
 gi|310760360|gb|ADP15809.1| RNase II stability modulator [Achromobacter xylosoxidans A8]
          Length = 665

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 132/551 (23%), Positives = 237/551 (43%), Gaps = 12/551 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V  +  ++   D                G     + G    +  ++   +    R  + 
Sbjct: 116 VVSEANSVIVIVDQNGRVQRFNKLSEEYTGKREQDIIGR-SVFEMFMTREEAIASRRNIA 174

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
            F   R    + E  +        ++       S S    +  I    DITE++++ E +
Sbjct: 175 EFYK-RGQSYEAERLINTVKGPRLFLFRNKFVTSGSGEKRVYLICSGTDITEERQAQERL 233

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR +   RL   L       + R  V+ +D+D +K+IND  G   GD
Sbjct: 234 RVLANTDMLTNLPNRHAITTRLKAALA---AGQDGRGGVLFLDLDNFKRINDHYGHGFGD 290

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L S+   I   L     LARL G+ F I+L     + ++   A  + + +  P     
Sbjct: 291 RLLKSVAVAISSCLSEGQTLARLGGDEF-IVLHEAAQTWELEATAQRIIERLREPFRQGL 349

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMI 707
            E+  + SIG A +         ++++A++AMY AK  G +    F+    R +   V +
Sbjct: 350 IEVYTSCSIGIAMYPEHGADLDSVVRSADIAMYVAKEAGRHTYRVFQPEMDRRNADYVWL 409

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A+    L L Y P +   + E+ G+EAL++W  P+ G +  + F+  AEE  +I
Sbjct: 410 DTNLRKALAEDHLMLYYQPKLAGRNGEVDGVEALVRWRSPERGMVGPNVFIPYAEESGLI 469

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + ++++   AR   +W+       I I IN++++ L D  +       I+     P  
Sbjct: 470 SPLGVWVMREAARQAAAWKRDGLN--IRIAINVSARQLNDKGVVSDFMRAINDASLDPCL 527

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +ES ++ +   +  L+ + R++G  + LDDFGT  S LS L  IP D +K + S 
Sbjct: 528 LDIELTESCLIDDEGAAIELIKQFRQLGARVHLDDFGTGYSSLSQLARIPLDAIKLDASF 587

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G  E     A+ R+I+ +A+ +E  +IA+ +    +   +  +G D  Q    A P+ 
Sbjct: 588 VRGVNENPVSQALARAIVAVARTLELKVIAEGVETTEEAVFVDTLGVDAKQGYLYAKPMP 647

Query: 946 FNSILKLLKER 956
                  L +R
Sbjct: 648 AAEFTAWLAQR 658


>gi|304410261|ref|ZP_07391880.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS183]
 gi|307302028|ref|ZP_07581786.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica BA175]
 gi|304351670|gb|EFM16069.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS183]
 gi|306914066|gb|EFN44487.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica BA175]
          Length = 684

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 211/431 (48%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKR-SFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +   +     ++RL G+ F I+  + +   + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDKLLTQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +++  EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKVIACEALIRWQ-KDGRLISPVSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + +  W+ + N   I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCKVLREWQKKYNY-AIPIAINVASQQFADASLVPDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAIAKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++       AI  +I+ + K +  TI+A+ I  E  +  L    C   Q  + +
Sbjct: 597 KIDRCFVSDL-PGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKENQCQVGQGFYFS 655

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 656 QPLPQAEFEAL 666


>gi|117919483|ref|YP_868675.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611815|gb|ABK47269.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 674

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 122/431 (28%), Positives = 213/431 (49%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 230 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVH-KSSFALMFIDLDRFKNINDSL 288

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     ++RL G+ F I+  S ++  + ADF   +   + +
Sbjct: 289 GHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNV 348

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 349 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 408

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +I   EALI+W       IS   F+ +A
Sbjct: 409 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITACEALIRWQ-KDGRLISPISFIPVA 467

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  R +  W+ + N   I I IN+AS+   D  L   ++ +  + 
Sbjct: 468 EETGIIIPIGRWVIEQSCRVLRDWQKKYNY-AIPIAINVASQQFADASLVSDIKQMALRY 526

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 527 QIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 586

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++       AI  +I+ + K +  TI+A+ I  E  +  L R  C   Q  + +
Sbjct: 587 KIDRCFVSDL-PGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQGFYFS 645

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 646 QPLPQAEFEAL 656


>gi|237798864|ref|ZP_04587325.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021718|gb|EGI01775.1| PAS:GGDEF protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 972

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 125/449 (27%), Positives = 237/449 (52%), Gaps = 13/449 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + +   A  D+LT +PNR    + L  ++    +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKKKLTYLAENDSLTHLPNRWFLNNYLRELISRKTSAPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++     +   I   A  +  
Sbjct: 580 DTMGHSVGDQLLIQAGRRLKDCIDGNSVVARLGGDEFSIVVTHRVYSESLIKLLATHVID 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++A P +L  ++I V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +    
Sbjct: 640 ALAKPFDLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYNARM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G +S ++F
Sbjct: 700 NESLIKRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGLEALLRWNHPEQGMVSPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + L+++ ++   I SW +      + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGLWVIRKVCETIKSWEENTIRL-VPIAINLSVRQLQVKGLAETVKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +   +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEEYGVNPALLEFELTESMLMIDPESAVEILKDIKSYGISLSVDDFGTGYSSLAYLRRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRVFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLELLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE------RFP 958
           Q    + P+  +    ++K       RFP
Sbjct: 939 QGYFFSRPVISDECAAMIKSSRSLDIRFP 967



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 81/265 (30%), Gaps = 30/265 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFS--------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    +              + + +   +   A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFH 493
            T       S        L            +  +             E R+     +  
Sbjct: 275 VT-------SSQHSRAELLELTIDEVWTGMSSATEPWRWTPENEVWNGEVRLSGRTGKDA 327

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR--- 550
           W    I P+ +  G + +YI I  DIT++K+    IL NA + NL  +  +Q+  +    
Sbjct: 328 WHRRTIIPILDDMGGVEKYICIDIDITDRKEFEVAILDNARRQNLIALFGQQALTEENVS 387

Query: 551 -L--TTILDLSATDDNLRPTVMVID 572
            L     L  +      +  ++V+D
Sbjct: 388 TLGERAALTAAQGLTLSKAALLVVD 412


>gi|77918616|ref|YP_356431.1| putative response regulator [Pelobacter carbinolicus DSM 2380]
 gi|77544699|gb|ABA88261.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 628

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 228/446 (51%), Gaps = 15/446 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    +   A+ DNLTG+PNR  FL+ L   L ++      +  ++ ID++ +K+IND 
Sbjct: 165 RQIQGRLHRLAYFDNLTGLPNRTQFLESLNKTLAIAQRKQK-QAALLFIDLNDFKRINDT 223

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDIL---------ARLSGNRFGIILISENNSLKIADF 633
           LG ++GD +L  + +R+   ++  D+L         ARL G+ F ++L    +   +A  
Sbjct: 224 LGHSMGDKLLEIVAKRLAGCIRESDLLGSTCEGSKTARLGGDEFTVLLPEVESEQFVATV 283

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   +  P +L + ++ VT SIG A + +    +  ++K A++AMY AK+R   +  
Sbjct: 284 AKRIFHCLTRPADLDKHQVMVTPSIGIALFPNDGKDAETLMKCADMAMYFAKNREPENYR 343

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            ++  +++    R+ I+  L  A++  EL LVY P   L    + GLEAL++WD+ + G 
Sbjct: 344 FYQESMNTEALKRLAIETQLRHALQRQELSLVYQPQFDLNTGAVSGLEALLRWDNQELGQ 403

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   EF+LIAEE  +I  +  +++      + +W +     P  I +N++ K+ +  +  
Sbjct: 404 IPPKEFILIAEETGIIYDLGHWVMCTACNQVKTWHNMDIELP-RISVNVSPKEFIHPDFL 462

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  + ++   P  +++  +E+++M + E +  +L  L ++G+ + +DDFG   S L+
Sbjct: 463 SNVKTALDESGLEPGGLQIEITETLLMEHYEGTAKILEELSRMGVQIAIDDFGKGYSSLN 522

Query: 872 YLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +  D +K + S + G +   K  +++++II MA  +   +IA+ +  E     L  
Sbjct: 523 RLHTLTIDCLKIDRSFVNGISVGFKEQSVIKAIISMASAMNLKVIAEGVETENQFTFLKD 582

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
             C   Q   ++ PL        L++
Sbjct: 583 KHCQEAQGYRLSLPLTTEQAEYFLRK 608


>gi|148259870|ref|YP_001233997.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146401551|gb|ABQ30078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidiphilium cryptum JF-5]
          Length = 809

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 145/750 (19%), Positives = 296/750 (39%), Gaps = 47/750 (6%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
              L  + +                ++    +      +L  F   +    R  A  G  
Sbjct: 66  VASLVGLLVAGAIAFDFHATTQRPSVLAAFLALAITYLALFGFTTAWPVIRRRIADFGRA 125

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
             +    I  L  + +   +V    A  +    +L      +             +  W 
Sbjct: 126 KAAFNRLIFAL-GVFWATYLVLLMRASDSANQALLLSIMIGLISTTISAGPLSSTLSFWA 184

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLATGYFSQGIFS 402
            + +            + +D+ +P  V  L      + FT++   + +L     +  +  
Sbjct: 185 PLTVGAFTAL-----YVSHDLWRPVFVITLGAYSAFVFFTMVVLNRRMLERSVNALELMR 239

Query: 403 DGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             E   + +      + D +W+ D   + V  +  +A +    +  + G + +++     
Sbjct: 240 TSETIQMLLRDFEENASDWLWETDAALNLVHPSARLAEVAHRPASEIRGNLFDFMAGT-- 297

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAA----------DNQFHWMIIRIRPMSNSNGD 508
              D                L+ + R+R              +  W  +  +P  +  G 
Sbjct: 298 ---DAALASPADPAIDPYAELRRQIRMRRPFRDLVVPVSAAGERRWWSLTGKPTLDHEGA 354

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              Y G+ +D+T  ++S + I   A  D LT + NR +F   L   L      +     +
Sbjct: 355 FAGYRGVGSDVTAMQRSRQRIDFLAQHDTLTELINRAAFGVLLDRALA---PGNACGAAL 411

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +ND  G  +GD +L ++  R+   ++  D  ARL G+ F ++L S N+ +
Sbjct: 412 LYLDLDQFKAVNDSYGHGLGDILLRAVASRLRNAIRETDTAARLGGDEFAVLLPS-NSRI 470

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  + + ++ P       + +  SIG A   +       + +NA+LA+Y AK+ G
Sbjct: 471 DATAMADRIIERLSRPYRFDGVSVEIGVSIGIALAPADGDRQDLLFRNADLALYRAKNDG 530

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 F   +     ++  ++ D+  A+ + +L++ Y P++ L    I  +EAL++W H
Sbjct: 531 RGTWRLFDQAMDRQVQNQRSLRRDIKRALHDGQLFVEYQPVVCLRTRRIRSVEALVRWRH 590

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G I   +F+ IAE   +I A+   +L   A   I          + + IN+++  L 
Sbjct: 591 PQRGIIGPEDFIAIAERCGLIGAVTRHVLTEAASLAIRLPSS-----VSVAINLSALHLR 645

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +  L + + A+IS +  +P R++   +E+ ++   +R+   L RLR+ G  + +DDFGT 
Sbjct: 646 EALLFDQLSAVISTSGLAPERVEFEVTETALLTTDDRTIDNLRRLRRFGCRIAIDDFGTG 705

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + LS L   PFD +K + S +   G  E    I+++I+   + +   I  + +  E   
Sbjct: 706 FASLSTLRSFPFDRLKIDRSFIHELGRAENGERIVKAIVEFGQTLGLLITVEGVETEEHA 765

Query: 925 KEL---TRMGCDYIQDSHVASPLGFNSILK 951
             L     +     Q    + P+  + I+ 
Sbjct: 766 AMLYGYRDID---AQGYLFSPPVSGDRIVA 792


>gi|225376992|ref|ZP_03754213.1| hypothetical protein ROSEINA2194_02634 [Roseburia inulinivorans DSM
           16841]
 gi|225211169|gb|EEG93523.1| hypothetical protein ROSEINA2194_02634 [Roseburia inulinivorans DSM
           16841]
          Length = 617

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/576 (20%), Positives = 234/576 (40%), Gaps = 33/576 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASG 443
            +IQ +L        + S        +   G  ++  D     +                
Sbjct: 63  RIIQTILTKRITKNSLASSYASLEAILENVGCAIYVRDPQTGHILYANEKYQKFFKKTLE 122

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +     +                L      + G  +  +    ++ +  W       + 
Sbjct: 123 ELPLSPVS----------------LQDATETKNGLFREIY----SEKENRWFDCYSTHIQ 162

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  +  +    D+T++K   + I   A  D LTG+ NR      L   ++ +     
Sbjct: 163 WVDGRKV-TLCTIYDVTDKKLYQQKIEKQANNDFLTGLYNRMRCEQDLQHFVEDTHESGG 221

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ ID+D +K IND LG   GD +L +++  + ++    D   R+ G+ F I++  
Sbjct: 222 -EGALLYIDLDDFKHINDGLGHQYGDILLKNISSGLKQIPGVNDNCYRMGGDEFIILISH 280

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +     + +    ++   A P  L   E   T S+G   + +   T  E++K A++AMY 
Sbjct: 281 KVYPN-LHNIIDRIKAEFARPWRLKGTEYYCTMSMGVVRFPTDGDTVEELIKKADIAMYD 339

Query: 684 AKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEE--IVG 737
           AK  G N V  +  +       R+ +++++  A  N   E  + Y PI  +        G
Sbjct: 340 AKCAGKNRVAYYDENVISTSFKRLDLEKNMRNATRNAFDEFEVYYQPITDISKPGMPCSG 399

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+  + G IS +EF+ +AE L +I  I  F+L         W D    P   + 
Sbjct: 400 AEALIRWNSRELGVISPTEFIPLAEYLGLINPIGSFILREACMRCKYWNDM-GHPDYKVN 458

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   LL N++ E +  +IS+T   P  + L  +ES+ + +  R + +L  ++K+G+ 
Sbjct: 459 VNLSVVQLLQNDIVEQIAEVISETGIDPKNLTLEVTESLAINDMNRMKKILADIKKLGVR 518

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S L+++  +P D +K +   +    +     A ++ +  +A  I+  +  
Sbjct: 519 VALDDFGTGYSSLNHIREMPIDVIKIDRCFIIDIGKDDFSNAFVKMVAELASAIDVNVCV 578

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  +  +  L       IQ  +   P+      +
Sbjct: 579 EGVETKEQLDILMGSKIQLIQGFYFGRPMTAREFEE 614


>gi|209544676|ref|YP_002276905.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532353|gb|ACI52290.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 974

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 143/551 (25%), Positives = 259/551 (47%), Gaps = 21/551 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYIHINDRDNF 464
             +A+      +  +      +      A I GL  G+       R  L  ++   R   
Sbjct: 412 LDIALQNMSHGLCLFGADARLILANGRYAEIFGLPEGAAKPGMTYRALLTLVY-TRRGLS 470

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN----SNGDILRYIGIANDIT 520
              +   V     R     R R            +         ++G    ++    DIT
Sbjct: 471 AEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADG---GWVATYEDIT 527

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++   I   A  D+LTG+ NR  F + L   L L+A     R  V+ ID+DK+K+IN
Sbjct: 528 ERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAA-SGTQRVAVIGIDLDKFKEIN 586

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD VLV+L  RI ++L+  +++ARL G+ F       ++  ++  F   + + 
Sbjct: 587 DQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAA-KRFDDMAELNAFIGRLEEC 645

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ PI +   E+   ASIG + +     T   ++ +A+LAMY AK     HV  +     
Sbjct: 646 LSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREHVCFYEAEMD 705

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR  +   L  AV++ + +L +    R+   EI G E L++W HP+ G ++  +F+
Sbjct: 706 EAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPMDFI 765

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I  I  ++L +  R+   W       P  I +N+++  L ++ L + ++A++
Sbjct: 766 PLAEECGAILPIGEWVLRQACREAARWSR-----PYRIAVNLSAVQLGEDGLADMVRAIL 820

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T  +PSR++L  +E+ ++ + ++S   L R++ +G+S+++DDFG   S L  L   PF
Sbjct: 821 EETGLAPSRLELEITETAIIVDKQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPF 880

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S MT    + +  AILR+I+ + +++   ++A+ +  ++ +  L   GC   Q
Sbjct: 881 DKIKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGVETQVQLDILHAEGCIEAQ 940

Query: 937 DSHVASPLGFN 947
              +  P    
Sbjct: 941 GYLLGRPKPME 951


>gi|30577826|emb|CAD90957.1| LssE protein [Legionella pneumophila]
          Length = 842

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 155/803 (19%), Positives = 335/803 (41%), Gaps = 55/803 (6%)

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252
            I+   A    I     ++           A+      +I         + ++      +
Sbjct: 54  AIVYNTALCFIILSFSIFLFLNC---YYKSAITLSFTVFILSGLALTQHVFSINLQIDEV 110

Query: 253 W-------------RACSEIALSSSLIIFLFMYLHWNRW---HAKVGYITFSGIACIAIL 296
           +             R  S  A    LI    + ++   +   +  +       + C+A+L
Sbjct: 111 FFHHYQSIENAYPGRMASNTAFCFLLITTALVLMNIRGYQSFNNSLAGALGLLVFCLALL 170

Query: 297 FCMSFYYPMVTASIA------RITLASIVLYYTYFIIYHGMKGY-------ERAVLLIPA 343
           F   ++  +  A          I      L  +  ++                A+  + A
Sbjct: 171 FISGYFSDIQQAYKWGNKTPMSINTGIGFLLLSLAVMGLYWHNNTLYQLNSGIAMPYLSA 230

Query: 344 WILIFIWFIGLWMAIT----KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           + ++F + +  +          L  ++    L  G V   IL G  +    LA       
Sbjct: 231 FCIMFTFSLLSFEIFKKEKELNLSTNLSISTLALG-VFFSILFGLIIRLWQLAKISAVTA 289

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--- 456
            ++  E     +  + D +   D     +        +      S+     + +  I   
Sbjct: 290 KYALSE-IKATLESTADGILVVDRAGKVMNYNKRFLNMWYQEERSLKTINYHDIKLIINK 348

Query: 457 -HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
             IN R+  +  ++  +     +  +E + +    + ++     +P+   + +I+  +  
Sbjct: 349 QLINRRETIQR-INKILKNPNYQHAFELKFK---GEIYYDCYT-QPLKLDD-EIIGRVWS 402

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT  K+    +   +  D LT +PN+   ++ L   +  + +   +   V ++D+D+
Sbjct: 403 FRDITIPKRLEIELSHQSTHDMLTNLPNKVLAINMLGYAMKTAVSSKKI-VGVYLLDLDR 461

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           + +INDV G + GD+++ ++++R+ + +    +L RLSG++F I++ S NNS ++     
Sbjct: 462 FTQINDVFGHSKGDEIIKAISKRLIDCVPMNHMLGRLSGDQF-IVIASINNSKEVVTGVT 520

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +   P+ +    I ++ S+G +S+     T   +L  A++A+   K  G N  + +
Sbjct: 521 RLLSAFHEPVKMNGHSIKMSCSVGISSYPKDGNTVDTLLSKADIALSRTKVEGRNSFQFY 580

Query: 696 RVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      ++++ +L  AV  +E  L Y PI++L    ++G EALI+W+HP+ G I 
Sbjct: 581 TQEMHSYTLEHILLESELKNAVAKNEFVLYYQPILKLSSLNVIGFEALIRWNHPRNGLIL 640

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AEE+ +I  I  ++   + + I +W+ Q     I I INI+ K      + + 
Sbjct: 641 PDKFIPLAEEIGIIGEIGDWVFVTVCKQIQAWQLQ-GFKNIKISINISPKQFKFQYIPKR 699

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L+S+       I+L  +E++++         L +L+++GI +++DDFGT  S LSYL
Sbjct: 700 INELLSEFQVKSESIELELTENILIDKSTDIIDTLSKLKEMGIQISIDDFGTGYSCLSYL 759

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + + +      +    ++++II MAK    ++IA+ I  +  ++ L ++G
Sbjct: 760 KDLPIDILKIDQTFVKDLKNNQSNQTLIKAIIAMAKKFNLSLIAEGIENQYQLEFLKKLG 819

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C Y Q  + + P      ++ L+
Sbjct: 820 CHYGQGYYFSHPKPTEKCMQFLQ 842


>gi|89097952|ref|ZP_01170839.1| sensory box/GGDEF family protein [Bacillus sp. NRRL B-14911]
 gi|89087454|gb|EAR66568.1| sensory box/GGDEF family protein [Bacillus sp. NRRL B-14911]
          Length = 793

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 144/791 (18%), Positives = 301/791 (38%), Gaps = 46/791 (5%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSM-------LIPTFAMAWVVLGYISIDFGFLSKLV 243
           Y   ++G+   +     +   V +SS         +   A    +  +++  F  L+   
Sbjct: 9   YFYALLGIIFSIINCSLLLRSVRKSSNSKGNTSDHLLRDASIIGITFFLTNLFVVLALNA 68

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC-------IAIL 296
            + + +   +      +      + +   +   +      Y+    +          + +
Sbjct: 69  KVDAVDFFFYFLYFLFSCIGGSFLAIK--MGIKKQLGTGLYLLAGFMITSIILLADYSAV 126

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL---IFIWFIG 353
           F +  +   +   +  +T    +      + +      E        W L   +      
Sbjct: 127 FILFHHDLHLNLPLVLMTGLITLGISFSSLRFLLQLSKEPENSSSRRWELIGSLAAGLAL 186

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL---------ATGYFSQGIFSDG 404
             +     +    IQ      L L    +    +  +                  +    
Sbjct: 187 SGIPYLTAISAVGIQSGYFNELFLFPYAVEILAMTTLAIVPDLFGEYRNTVNETRLEKSE 246

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +  S     + D V+  ++    ++       + G     +      ++P I   D    
Sbjct: 247 QHFSSLFDSNPDSVFSINLEGRFISVNKMAEKLTGYTEAELLQ--MTFIPLIFEKDISRT 304

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                          ++E  ++  D     + I   P+     +++   GIA DITE  +
Sbjct: 305 LDYFLQAKEGI--PSEFEVTMQRKDGISAIVRIIAVPIVLQK-EVIGVYGIAKDITEIIQ 361

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           S E I      D LT   N + F+     ++      +    +++ I+I + + I +V G
Sbjct: 362 SQERIRHLVNHDELTDHYNSRKFIYEADKVIA-----EGSPVSILSIEIGRIRSIREVFG 416

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           I  GD +L   + R+        +  RL+G+ F +++    +  K    A  + ++ A P
Sbjct: 417 IKEGDGLLREASSRLKNAFGESALFGRLNGDEFALLIRENLDLEKA---AGLIERAFAEP 473

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
             + + EI +  SIG A +      +SE+L+NAE A              +     +   
Sbjct: 474 FTVDDHEIFLECSIGAAIFPDHGKEASELLRNAENAKRTVSKNDHAFFALYERKQNQHSL 533

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++++I+ +L  A+E+ EL L Y P   ++ E + G EAL++W HP+ G +    F+ +AE
Sbjct: 534 EKIVIENELKKAIESDELMLYYQPKYNILKECLTGFEALVRWKHPQKGILPPGVFIPVAE 593

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I A+ L++L      +  W        + + IN++ K   +  L + +     +  
Sbjct: 594 QSGLIAALELWVLREACFQLKRWHSTEL-MGLPVSINLSQKSFSNPGLVKSITRCTEQAG 652

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS +++  +ES+ M N + +   L  L+K G+ ++LDDFGT  S LSY+  +P DT+K
Sbjct: 653 IDPSLLEIEITESLAMFNEKETIEKLQFLKKYGMKISLDDFGTGYSSLSYIDKLPIDTIK 712

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +   G      +++ +II M+  ++  +IA+ +  +     L+RM C  IQ  + 
Sbjct: 713 IDKSFIDRLGDNGNGHSMVSAIISMSSFLKLHLIAEGVETKEQADMLSRMDCHEIQGYYF 772

Query: 941 ASPLGFNSILK 951
           + P     I +
Sbjct: 773 SPPKPAAEIER 783


>gi|119774102|ref|YP_926842.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119766602|gb|ABL99172.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 680

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 219/442 (49%), Gaps = 7/442 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +        T++ ID+D++K +ND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKR-SFTLLFIDLDRFKNVNDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     +ARL G+ F I+    + +   ADF   +   +  
Sbjct: 299 GHALGDQFLARIARLLERVVGDKGTVARLGGDEFVILADEIHCADMAADFVDKLLVQLNN 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L +  I   AS+G + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAKASGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N E  L + P + L   +++G EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQ-KDGRLISPMSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  ++LE+  + +  W+ Q     I I +N+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIVPIGRWVLEQSCKTLRHWQKQY-NFAIPIAVNVASQQFADASLVPDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QISPDLLEIEITETSLMSDVETAISKLEQLKNAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T       AI  +I+ + K ++  I+A+ I  E  ++ L   GC   Q  + +
Sbjct: 597 KIDRCFVTDL-PNDSAIASTILMLGKQLDLRIVAEGIENEQQLQWLKTAGCGIGQGFYFS 655

Query: 942 SPLGFNSI-LKLLKERFPLVKN 962
            PL       K ++ +   ++N
Sbjct: 656 PPLPMEEFEEKYIRSQTAEIQN 677


>gi|293604846|ref|ZP_06687243.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292816674|gb|EFF75758.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 665

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 130/551 (23%), Positives = 239/551 (43%), Gaps = 12/551 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V  +  ++   D                G     + G    +  ++   +    R  + 
Sbjct: 116 VVSEANSVIVIVDQNGRVQRFNKLSEEYTGKREQDIVGR-SVFEMFMTREEAIASRRNIA 174

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
            F   R    + E  +     +  ++       S S    +  I    DITE++++ E +
Sbjct: 175 EFYK-RGQSYEVERTINTVKGRRLFLFRNKFVTSGSGEKRVYLICSGTDITEERQAQERL 233

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +PNR +   RL   L++       R  V+ +D+D +K+IND  G   GD
Sbjct: 234 RVLANTDMLTNLPNRHAITARLKAALEVGQE---GRGGVLFLDLDNFKRINDHYGHGFGD 290

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L +++  I   L     LARL G+ F I+L  +  + ++   A  + + +  P     
Sbjct: 291 RLLKAVSVAISTCLSPGQTLARLGGDEF-IVLQEQAQAWELEATAERIIERLREPFRQGL 349

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMI 707
            E+  + SIG A +         ++++A++AMY AK  G +    F+    R +   V +
Sbjct: 350 IEVYTSCSIGIAMYPDHGADLDSVVRSADIAMYVAKEAGRHTYRVFQPDMDRRNADYVWL 409

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A+  + L L Y P +     E+  +EAL++W  P+ G +    F+  AEE  +I
Sbjct: 410 DTNLRKALAENHLMLYYQPKLVGRTGEVHSVEALLRWRSPERGMVCPGTFIPYAEESGLI 469

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + ++++   AR   +W+       I I +N++++ L D  +       I      P  
Sbjct: 470 SPLGVWVMREAARQAAAWKRDGLN--IRIAVNMSARQLDDKGVVSDFMRAIGDAGLDPCM 527

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +ES ++ +   +  L+ + R++G  + LDDFGT  S LS L  IP D +K + S 
Sbjct: 528 VDIELTESCLIEDEGAAIDLIKQFRQLGARVHLDDFGTGYSSLSQLARIPLDAIKLDASF 587

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G  E     A+ R+I+ +A+ +E  +IA+ +    +   L  +G D  Q    A P+ 
Sbjct: 588 VRGVNENPVSQALARAIVAVARTLELKVIAEGVETVEEAGFLDTLGVDAKQGYLYAKPMP 647

Query: 946 FNSILKLLKER 956
               +  L +R
Sbjct: 648 AAEFVTWLAQR 658


>gi|218532290|ref|YP_002423106.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218524593|gb|ACK85178.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 563

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 213/475 (44%), Gaps = 27/475 (5%)

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R R        +   + P+         +     D+TEQ          A Q+ LTG+ 
Sbjct: 83  VRARLTLGGDRRVEAALAPL-----SAGGFALTFEDVTEQ----LRGAALARQEPLTGLC 133

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR    DRL   L  +A        V+++D+D++K +ND LG  VGD +L  +  R+   
Sbjct: 134 NRVGLHDRLDAALTEAART-GAPLAVLMLDLDRFKTVNDTLGHPVGDALLRKVAERLRRA 192

Query: 603 LKFPDILARLSGNRFGIILIS--------ENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            +  D++ARL G+ F I+ +                   A  +   +     +    + V
Sbjct: 193 TRSGDLVARLGGDEFAILQVDPQVGPHAGVEQPHAAEALARRLVDLVGRTYVVDGHMLNV 252

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
             S+G A   +    + ++LK+A+LA+Y AK  G      F  +     +    ++ DL 
Sbjct: 253 GVSVGVAIAPADGQNADDLLKHADLALYRAKAAGRGTYRFFEPAMNAQMQARRGLEIDLR 312

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   +  L + P I+L   ++ G EAL++W+HP+ G +S + F+ +AEE+ +I  I  
Sbjct: 313 RAMALKQFDLAFQPQIQLESGDVTGFEALLRWNHPERGPVSPALFIPLAEEIGVIVGIGE 372

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R+   W       P  I +N++        L E +  ++++T   P+R++L  
Sbjct: 373 WVLRTACREAARWP-----HPASIAVNLSPVQFRGGRLVETVTNVLAQTDLDPARLELEI 427

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E  ++ N +    +L  LR +G+ +++DDFGT  S LSYL   PFD +K + S + G  
Sbjct: 428 TEGALLENTDSVLDVLNGLRALGVKISMDDFGTGYSSLSYLQKFPFDKIKIDQSFVRGME 487

Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                 AI+R+I  +  ++     A+ +     +  +   GC  +Q      P+ 
Sbjct: 488 GNAECGAIVRAIARLGASLGMRTTAEGVETATQLDAIRAEGCTEVQGYLTGRPMP 542


>gi|153002635|ref|YP_001368316.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367253|gb|ABS10253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 706

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 233/556 (41%), Gaps = 8/556 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S  +  S + V+  D     +     +  I G ++  +      +L          
Sbjct: 153 KEILSTTLEESAEAVYITDTDDQILAVNKAMCRICGYSAEQLISKTPEFLEL---KSHHL 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                      +RG  Q E   R +D          R +   +G     + I +DI+ +K
Sbjct: 210 GEETECQIALKQRGFWQGETWKRRSDGSNFPAWQSSRKIITEDGAHYN-VNIFSDISTKK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A  D LTG+PNR      L + L+   TD      +M +D++ +K IND  
Sbjct: 269 LLETQLTTRAMYDTLTGLPNRFHLKQILNSALEKLKTDPLALGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFES 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
           P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +   L  A    +  L Y  I+ L   + +  EAL++W         +++F+ + E
Sbjct: 449 LKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQTIAAEALLRWQKSPTEYYDAADFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I +I  ++LE+       WR         I +N++   L   +  + +   +    
Sbjct: 509 ETGLIVSIGQWVLEQACVQAAQWRAHN-QADFRISVNVSPLQLEHLDFIDQVINALEMAN 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE++RL L R++ +G+S+ +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +        E     +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNEVSGQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK-LLKER 956
            P   ++  +  L E+
Sbjct: 688 YPSSVDNFTQTFLTEK 703


>gi|126665277|ref|ZP_01736259.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
 gi|126629905|gb|EBA00521.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
          Length = 828

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 221/445 (49%), Gaps = 18/445 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D+LTG+PNR    + L  ++ L+  +   R  V+ +D+D +K++ND LG  V
Sbjct: 373 RVERLAYHDSLTGLPNRFRAHETLRCMISLAHRESR-RMAVLFLDLDNFKRVNDTLGHQV 431

Query: 588 GDDVLVSLTRRIGELLKFPDIL------------ARLSGNRFGIILISENNSLKIADFAI 635
           GD +L+ +  R+  +L+  D++            ARL G+ F ++L + ++S   A  A 
Sbjct: 432 GDQLLMEMAIRLQVVLRAEDVIHQEVSQNTLDVLARLGGDEFVVLLSNVSSSRDAAKVAS 491

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   + +P    E EI    SIG + + S      +++K A+ AMY AK +G N+ + +
Sbjct: 492 RILDIMKLPFYFNENEIYSGCSIGISLFPSDGSDVDDLIKRADAAMYQAKSQGRNNFQFY 551

Query: 696 RVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S      + + ++  L  A++N+EL L Y P+++    +IVGLEAL++W+ P  G I 
Sbjct: 552 SASYNLAALEHISLEGRLRRALKNNELVLYYQPLVQARTGKIVGLEALLRWNDPLDGIIP 611

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE  +I  +  ++L    R + +W          + +N+++  L   +L   
Sbjct: 612 PDRFIPVAEESGLILPLGEWVLREAGRQLSTWHAA-GFTDACVSVNVSAIQLQRQDLVTI 670

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++      P +++L  +E+ +M         L  +R+ G++++LDDFGT  S LS L
Sbjct: 671 VDQVLKDNGLRPWQLELEITETALMRIRPEVIGDLNAMRRKGVTISLDDFGTGYSSLSLL 730

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K + S +       K  AI+ +++ +AK++     A+ +        L   G
Sbjct: 731 QELPIGKLKIDKSFVRDMLVDPKDAAIVSAVLFIAKSLGLQSTAEGVETPEQAARLAEEG 790

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD +Q   +  PL    + + LK R
Sbjct: 791 CDQLQGYLLCRPLPVAEMTEFLKSR 815


>gi|330960970|gb|EGH61230.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 705

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++ + +   A  DNLTG+PNR    +R+   +  +         +M +D+D +K +
Sbjct: 250 TSLSQANQELTHLAMHDNLTGLPNRVLLTERIEQAMARADETGGC-FALMFMDLDGFKPV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +L  +  R+ + +   D LAR+ G+ F +++   ++       AI    
Sbjct: 309 NDAFGHHTGDLLLRQVALRLRQNVNRHDTLARVGGDEFVLLIE-LDDQQDALTVAIRQVS 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  + E ++ ++ SIG   +     T  E+L NA+ AMYH K  G N    F   +
Sbjct: 368 EISNPFLIGEHQLQISLSIGICIYPGHGATQHELLVNADAAMYHTKAAGKNGHSFFDVSM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +    +++ + +DL  A+ +    L Y P    +    +G EAL++W+HP+ G +    F
Sbjct: 428 NCNARNQLQLSQDLRTALRHKHFCLYYQPKFDALSGLPIGAEALLRWNHPERGLLGPDLF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+   R +  W  +       I +N+++     + L   +   
Sbjct: 488 IAMAEKTGLIIQIGEWVLDEACRQMREWYTE-GYSHWRISVNLSALQFRHSGLVATVADT 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++     + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P
Sbjct: 547 LARHQLPANCLTLEITETTAMDDADASLGVLNRLSEMGLDLSIDDFGTGYSSLMYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GCD +
Sbjct: 607 ANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETTLQQRFLTHLGCDSL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  PL     L+
Sbjct: 667 QGFLLGHPLPAEQFLE 682


>gi|120597904|ref|YP_962478.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|146293924|ref|YP_001184348.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|120557997|gb|ABM23924.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|145565614|gb|ABP76549.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|319427301|gb|ADV55375.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella putrefaciens 200]
          Length = 682

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 215/431 (49%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKR-SFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     ++RL G+ F I+  + ++  + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERVVGDKGTVSRLGGDEFVILADAVHSPDQAADFVDKLLVQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   ++ G EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKVTGCEALIRWQ-KDGRLISPMSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + +  W+ + +   I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCKTLREWQKKYHF-AIPIAINVASQQFADASLVSDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++    +  AI  +I+ + K +  TI+A+ I  E+ +  L    C   Q  + +
Sbjct: 597 KIDRCFVSDL-PEDSAIASTILMLGKQLNLTIVAEGIENELQLDWLKENQCQIGQGFYFS 655

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 656 QPLPQAEFETL 666


>gi|260775425|ref|ZP_05884322.1| C-di-GMP phosphodiesterase A-related protein [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608606|gb|EEX34771.1| C-di-GMP phosphodiesterase A-related protein [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 653

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 230/464 (49%), Gaps = 10/464 (2%)

Query: 501 PMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P    + ++       +++  +++ +   +   A+ D+LTG+ NR   L  L   +D + 
Sbjct: 179 PNLYRDDELGHLAKTFHNLWKDREAAEAKLNQLAYYDSLTGLANRSLLLQMLEEAIDNAN 238

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              N    +  +D+D++K IND LG  +GD ++ ++++RI   L      AR+ G+ F I
Sbjct: 239 KT-NTSGVLFYLDLDRFKTINDSLGHTIGDHLIKAISKRIEAWLIDDYTAARIGGDEFAI 297

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++ S  ++ K  + A  +   I+ P ++ +  +  T S+G + + S   T+ ++L+ A+ 
Sbjct: 298 LMPSI-SADKAHETAQQLLALISNPYSIDDHLLYCTTSVGISIFPSVNSTNIDVLRQADT 356

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+   +L L Y P +    ++IVG
Sbjct: 357 ALYRAKVAGRNKYMFYEPEMQAQVESFLEIEKGLHEALNKGQLELYYQPQVNGA-QQIVG 415

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HP+ G +    FM IAEE   I  I  +++E+       WR Q  +P  F  
Sbjct: 416 VEALIRWNHPEKGVLPPGVFMPIAEETGQILQIGNWIIEQACYQYSRWRKQGVLPDTFRR 475

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+      N   E +  ++++       I+L  +E++++ N E +   +  L++  
Sbjct: 476 LAINISPLQFSQNSFVEHIHDVLAQADIDGEHIELEITENLLLENVESAIQRMSELKQHN 535

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           + +++DDFGT  S L YL ++  D +K + S +T     E   AI+ +II  A+ +   +
Sbjct: 536 LKISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVTQLHLDESDQAIVDTIIMTAQRLNLEV 595

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           IA+ +    ++  L ++GCD  Q      PL  + ++   +  F
Sbjct: 596 IAEGVEDANELNTLKQLGCDQFQGYLFDKPLPASELISRFEANF 639


>gi|189349796|ref|YP_001945424.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|189333818|dbj|BAG42888.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 860

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 138/562 (24%), Positives = 253/562 (45%), Gaps = 15/562 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      +G+ +   D     V        I G A   + G     L    
Sbjct: 180 RRSAEELRLAAKVFAHAGEGILVTDAQGHIVNVNRAFTVITGYAREEVLGQTPRLLESDR 239

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++T+  + + +       E   R  +      ++ I  + +  G I  Y+ + +
Sbjct: 240 YDD-EFYQTVWQALLEH--DYWHGELWCRRKNGSQFAALLTISAVPDMQGHIEHYVAMFS 296

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K++ + +   A  D LTG+PNR    DRL   +  +     +   V+ ID+D +K
Sbjct: 297 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIRQTRRR-GMHLAVVFIDLDGFK 355

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND  G AVGD +L  L+RR+ ++L+  D LARL G+ F  +L+    +         +
Sbjct: 356 EVNDQHGHAVGDKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPENSFSLPILDRL 415

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  A P+ + +    V+ASIG + +   +   + ++L+ A+ AMY AK  G N    F 
Sbjct: 416 IEVAAQPVPIGDALCEVSASIGVSYYPQGEDIDADQLLRQADQAMYRAKQAGKNRYHVFD 475

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R+ R   +  + +  A+ N +  L + P + +   E++G EALI+W HP  G +S 
Sbjct: 476 SEKDRTLRTRHEGFDSIENALANGQFLLYFQPKVNMRTGEVLGAEALIRWQHPARGLLSP 535

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ I E   +   +  + +E     I  WR      P  I +NI ++ LL  +    +
Sbjct: 536 ASFIPIIENHPLGIDVGKWTIEAALTQIEVWRKAGLHVP--ISVNIGARHLLQPDFIMHL 593

Query: 815 QALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++S+     P  ++L   E+  + +  +   L+    ++G+   LDDFG+  S L+YL
Sbjct: 594 RGMLSRHPRAQPQDLELEILETSAVEDFVQVSQLMTLCERMGLRFALDDFGSGYSSLTYL 653

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +   +         IAIL +++ +A++     IA  +      + L RMG
Sbjct: 654 KRLPAHLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAVGVESIQHGEMLLRMG 713

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C++ Q   +  P+  +   + L
Sbjct: 714 CEWGQGYAIGHPMPAHEFEQWL 735



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGL 440
             ++ +       Q + S   ++         +++ +    D        +  I  I G+
Sbjct: 40  GTVEDITDLKRVEQALNSMRRQREELASHVPGMLYQYRLRPDGSSHFPYASARIREIYGV 99

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A   +          +H  DRD     + +  G        E+RV+  D +  W+     
Sbjct: 100 APEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEAS 158

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           P +  +G IL + G  +D+T +++S E +   A
Sbjct: 159 PEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 190



 Score = 38.0 bits (87), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-------SLEGIL 530
            L   +R+  +  Q  W+ +R     N++G      G   DIT+ K+             
Sbjct: 5   SLDLRYRIV-SGGQVRWIHLRATFKGNASGQPRAADGTVEDITDLKRVEQALNSMRRQRE 63

Query: 531 CNAFQ 535
             A  
Sbjct: 64  ELASH 68


>gi|118590203|ref|ZP_01547606.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
 gi|118437175|gb|EAV43813.1| sensory box/GGDEF family protein [Stappia aggregata IAM 12614]
          Length = 1042

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 136/573 (23%), Positives = 256/573 (44%), Gaps = 22/573 (3%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            +        ++    + ER S     + D +    +    +        ++G     +  
Sbjct: 460  EQAHNRAADAKRTREEAERLSALANATFDAI-VISVDGRILDGNKTFEDLIGYQIDELE- 517

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             +R    ++   D +   T+ D  V   +     E  +     +   + IR R + +  G
Sbjct: 518  -MRGLYEFV---DNELAGTLEDHLVKAEKEP--REVTLINRSGERVPVEIRTRVI-SYRG 570

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               R +    D+ E+KK+   IL  A  D LT +PNR  F   L   +        L   
Sbjct: 571  VPTR-VSALVDLRERKKAEAQILHLAQHDPLTDLPNRAVFNAELKKAIGKCKQH-GLSAA 628

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +++ID+D++K IND+ G  VGD V+     R+ +  +  D ++RL G+ F II      +
Sbjct: 629  LLIIDLDRFKDINDLHGHPVGDVVIRVTADRLRQACRHGDTVSRLGGDEFAIIQNGVQFA 688

Query: 628  LKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +  D A+ + KS++ PI+      +   ASIG A  T       +++ NA++A+Y+AK+
Sbjct: 689  NQAEDMAMRLVKSLSEPIDCGHGLILKPGASIGVALMTGYDAE-DQVISNADIALYNAKN 747

Query: 687  RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G +    F   +      R  +++D+  A+   E  L + P + L    IV  EALI+W
Sbjct: 748  GGRHTYCVFLPGMGDEVRQRRALEKDMNTALSEGEFELFFQPRMCLATARIVSYEALIRW 807

Query: 745  DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            +HP  G +S  EF+ +AE    I  I  ++L    R          +    I IN++   
Sbjct: 808  NHPDRGLVSPGEFISVAETSGQIVPIGKYVLAEALRIAAK-----TITSASISINVSPVQ 862

Query: 805  LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
              D +  + ++  I  +     RI+L  +E+ ++ +  R+  +L RL++IG+ + LDDFG
Sbjct: 863  FRDRDFVDDVRRAIETSGVPAERIELEITENTLIEDDARALAVLKRLKEIGVKIALDDFG 922

Query: 865  TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
               S LSYL   PFD +K + S ++ +      +AI+ +++ + K ++  ++A+ +    
Sbjct: 923  VGYSSLSYLSRFPFDCIKIDRSFVSEAQHNYGSLAIIETVVRLGKALKMRVVAEGVEDTE 982

Query: 923  DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  + + GC   Q   +  P      ++++ +
Sbjct: 983  KLCLVAQRGCHEAQGYLIGMPAPAAKRVQMISK 1015


>gi|330940946|gb|EGH43887.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 972

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 233/440 (52%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   +   A  D+LT +PNR    + L  I+  + +  +   +V+ ID+D++K +N
Sbjct: 521 ERYDAKNKLTYLAENDSLTRLPNRWFLSNYLREIISRTTSAPDA-VSVIFIDLDRFKAVN 579

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ARL G+ F I++  S  +   I   A  +  
Sbjct: 580 DTMGHSVGDQLLIQAGRRLRDCIDENSVVARLGGDEFSIVVTHSVYSESLIKSLATQVVD 639

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  ++I V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +    
Sbjct: 640 ALGKPFNLGGQDIFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNFKFYDARM 699

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A+E  E  L + P + L+D  I GLEAL++W+HP+ G IS ++F
Sbjct: 700 NESLTRRLQTETLLRGALERDEFILHFQPKVSLVDGRISGLEALLRWNHPEQGMISPADF 759

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  + ++++ ++   + SW        + I IN++ + L    L E ++ +
Sbjct: 760 IPILEDTGLIIPVGVWVIRKVCETLKSWEKNNIRL-VPIAINLSVRQLQVKGLAETVKHI 818

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 819 VEAYGINPALLEFELTESMLMIDPESAVEILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 878

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     ++ L   GCD +
Sbjct: 879 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLNVIAEGVETVDQLELLVTYGCDQM 938

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + P+       ++K 
Sbjct: 939 QGYLFSKPVISEECAAMIKS 958



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 71/226 (31%), Gaps = 26/226 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 157 LVIQAILFAVFFLLISLVLMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 215

Query: 389 HVLATGYFS--------------QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    +              + + +   +   A+     IV +              
Sbjct: 216 IQEAIKAVNRTAASMRNHFGLRIESLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 274

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQF 492
            T    +   +          + I++     +  +              E R+     + 
Sbjct: 275 VTSSQHSRAELLE--------LTIDEVWTGMSSANEPWQWAPENEVWNGEVRLAGRTGKV 326

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            W    + P+ +  G + +YI I  DIT++K+    IL NA + NL
Sbjct: 327 AWHRRTVIPILDDLGGVEKYICIDIDITDRKEFEVAILDNARRQNL 372


>gi|312879067|ref|ZP_07738867.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Aminomonas paucivorans DSM 12260]
 gi|310782358|gb|EFQ22756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Aminomonas paucivorans DSM 12260]
          Length = 810

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 142/588 (24%), Positives = 257/588 (43%), Gaps = 28/588 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
           +L     ++ + S        +  + + +   D         P    I G  S    G  
Sbjct: 237 LLRDVSSTRRVASSLGIAQGIIALAREGILVCDARGFIEQVNPAFEAITGYTSAEAVGKT 296

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R      H  D   F       +  R G    E   R  + + +   + +  + +    
Sbjct: 297 PRILRSERHDED---FYRGFWDALR-REGTWGGEIWNRRKNGEIYPQWLAVAALQDEGTG 352

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +RY+G+ +D+TE K     IL  A+ D LTG+ NR    DRL   L  +   +N R  +
Sbjct: 353 TVRYVGVFSDLTELKTKDAQILHQAYYDKLTGLANRHLLQDRLRVEL-RACARENRRLGL 411

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +N  LG  +GD VLV   +R+   +     ++R   + F ++L    +  
Sbjct: 412 LFLDLDRFKILNSTLGYLMGDQVLVETGQRLSAAVGDQATVSRTGEDGFAVLLPDLESPG 471

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  + +++ +P +  E  + VTAS+G A +      S  +++ A+ A+Y AK RG
Sbjct: 472 HAGGEARRILEALQVPFSGPEGPVYVTASLGIAVFPEDGEESDMLIRKADGALYRAKARG 531

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           GN          R       ++  L  A+E  +L L Y PI+ L +  +VGLEAL++W  
Sbjct: 532 GNGYSFASEDLDRDFARRMNLEVGLRKALEEDQLLLYYQPILELREGRLVGLEALLRWSE 591

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                +   EF+ +AEE+ +I+ +  ++     + + SW D+       + +N++   + 
Sbjct: 592 APGRFVPPDEFIPLAEEIGLIQPLGAWVFRNALKQLRSWEDKGFR-DFTLCVNVSPLQIR 650

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D    E ++  + +T  +P R+ L  +E  ++G     R L  RL ++GI + +DDFGT 
Sbjct: 651 DPHFPESLEEALRETGANPKRLVLEITEQCLLGERAPLRELFLRLHRLGIRVYIDDFGTG 710

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET--------TIIAK 916
            S LSYL     D +K + S + G    ++  +++ +++ MA+ +               
Sbjct: 711 YSSLSYLKDFALDGLKVDRSFLQGVPENQRNRSLVEAMLAMARGLGLESVVEGVEE---- 766

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKNT 963
               E  +  L R+G   +Q    + PL   S+  LL++ R PL    
Sbjct: 767 ----EGQMDLLRRLGYPQVQGFLFSRPLPAESLESLLQKGRIPLPGRA 810



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH--INDRDNFRTI 467
           +  +   V+        +     +A + G  +  S           ++    DR+     
Sbjct: 15  LEDAVVGVFRSTPEGAFLWLNAALARLFGFESVESFMEARGEDARVLYGDPRDREQMLKA 74

Query: 468 LDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +      ++ RL Q+E  +R  D     + +  R + +  G+     G A D+T Q++  
Sbjct: 75  M-----GKQDRLLQFEMDMRRRDGSAMVVRLSCRLVRDERGEPRFLEGFAEDVTAQRRMK 129

Query: 527 EGIL 530
           E + 
Sbjct: 130 EELE 133


>gi|307720873|ref|YP_003892013.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978966|gb|ADN09001.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 776

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 121/428 (28%), Positives = 226/428 (52%), Gaps = 7/428 (1%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D+LTG+ N+   LDR+   +  + T +  + +V  +D+DK+K++ND  G  +GD++L
Sbjct: 348 AYHDHLTGLANKVLLLDRIEEAIKHAKTTEE-QFSVFFLDLDKFKEVNDTYGHEIGDELL 406

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           + +  R+ + +K  D LARL G+ F I+  +      I      + + +  P ++   EI
Sbjct: 407 LQIKSRLKQCIKSDDTLARLGGDEFAILHKNATKISTINLIDNILIR-MKKPFHVKNIEI 465

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
             + SIG A +      ++++L+NAE AMY AK  G N  + +          ++ +  D
Sbjct: 466 FTSFSIGVALYPQDSAKANQLLRNAETAMYKAKDDGKNTYQFYDKKMTEMALQKIQLDAD 525

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A++N E    + P I   + ++VG E LI+W HP+ G +   EF+   EE  ++  I
Sbjct: 526 IRKALKNKEFVAYFQPKIDARNGKVVGFETLIRWMHPQKGMMVPDEFIPFCEETGLVLEI 585

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + +ML +  + I+ W+ +       + +N+++K +  +   E +  +I    +  S ++L
Sbjct: 586 DKYMLIQSIKQIMKWQKEGLEFG-KVSVNVSTKKIESSNYIEELTYIIDSLQFDTSVLEL 644

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E  +M NP++S  +L +LR +GIS+++DDFGT  S LSYL  +P   +K + S +  
Sbjct: 645 EILEGQIMKNPQKSIEILNKLRDLGISISIDDFGTGYSSLSYLKKLPVTKIKIDRSFVID 704

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              ++  +AI+R+II +A+N++  IIA+ +     +  L   GC  IQ  + + PL  + 
Sbjct: 705 LPTSKDDVAIVRTIINLAENLKLEIIAEGVEKREQLDFLVNEGCYNIQGYYFSRPLPADE 764

Query: 949 ILKLLKER 956
             + +   
Sbjct: 765 CKEFIIAH 772


>gi|160876519|ref|YP_001555835.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|217972319|ref|YP_002357070.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS223]
 gi|160862041|gb|ABX50575.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|217497454|gb|ACK45647.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS223]
 gi|315268713|gb|ADT95566.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS678]
          Length = 684

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 211/431 (48%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKR-SFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +   +     ++RL G+ F I+  + +   + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDKLLIQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +++  EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKVIACEALIRWQ-KDGRLISPVSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + +  W+ + N   I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCKVLREWQKKYNY-AIPIAINVASQQFADASLVPDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAIAKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++       AI  +I+ + K +  TI+A+ I  E  +  L    C   Q  + +
Sbjct: 597 KIDRCFVSDL-PGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKENQCQVGQGFYFS 655

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 656 QPLPQAEFEAL 666


>gi|190890861|ref|YP_001977403.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696140|gb|ACE90225.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 764

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 237/440 (53%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  + I   A  D+LTG+PNR    +RL  ILD +  ++  + TV  ID+D +K IN
Sbjct: 325 ERKRVHDRIHFMAHHDDLTGLPNRAFLKERLANILDQARRNNR-KVTVAYIDLDNFKDIN 383

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D  G A GD+VL  +  R+   ++  D++ RL G+ F ++L+ +++    IA     ++K
Sbjct: 384 DGRGHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAGIARRLRELQK 443

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  P+     +I VTASIG A++     T+ E+L NA+ AMY AK  G N ++    +S
Sbjct: 444 AINRPMRGESGDIAVTASIGVAAFPVDGATAEELLANADRAMYRAKQLGRNTLQHHDGAS 503

Query: 700 FRSDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + +++ L  A+   +L+L Y P + +    I G+EAL++W+HP  G +    F+
Sbjct: 504 TSVGMPLGEQEELHQAITGDQLFLEYQPQVDVATGRITGIEALVRWNHPAKGRVPPVNFI 563

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L++L    R   +W+D     P+ I +N+++K   D +    +   +
Sbjct: 564 PLAEETGLIVPLGLWVLNEACRQARAWQDMGLA-PLTIAVNVSAKQFADPDFASHVAEAL 622

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +ESVVM + ER+  ++  LR +G+ L++DDFG+  S L+ L   PF
Sbjct: 623 ERHRLQSHWLELEVTESVVMQDAERALAMMASLRALGVRLSIDDFGSGYSSLAALKTFPF 682

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+      +   AI  ++I +A+ ++ +++A+ +  +  +  L +  C+  Q
Sbjct: 683 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRQAHCEEAQ 742

Query: 937 DSHVASPLGFNSILKLLKER 956
               + P+   +   LL+ +
Sbjct: 743 GYRFSKPVSPEAATLLLQTQ 762



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 52/176 (29%), Gaps = 17/176 (9%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
                 AL       V      +           + +     R    +    D ++  D 
Sbjct: 7   RWESAEALTAETRRFVAATEAMLASTAHHLSEGVENL-----RLKAIIHELPDFLYVKDR 61

Query: 424 VRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILD---SFVGYRRGRL 479
               V      A+ LG  ++  + G     L      D +  R   D     +   + R+
Sbjct: 62  DSRFVFANAVTASNLGFGSAEELTGKRDFDLF-----DFEVARRHFDIEQQIMATGQARI 116

Query: 480 QYEFRVRAADNQFHWMII--RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             E  V         +       P+ N  G+I+  IG++ DITE+K   +     A
Sbjct: 117 DMEETVVLP-GSPRPVCRLTSKIPLRNERGEIVGLIGVSRDITERKLQEDLHRGQA 171


>gi|329893786|ref|ZP_08269874.1| hypothetical protein IMCC3088_2012 [gamma proteobacterium IMCC3088]
 gi|328923509|gb|EGG30823.1| hypothetical protein IMCC3088_2012 [gamma proteobacterium IMCC3088]
          Length = 847

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 117/609 (19%), Positives = 252/609 (41%), Gaps = 19/609 (3%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           +    ++         Q  ++     I  L      Q        +  +    +R  + +
Sbjct: 227 LATIFSVAPMAGTSPTQRGVIFFGQDITAL-----KQANTEISASATQLQLSLDRLDVVL 281

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRTILDS 470
             +  IVWDW++    +         L L  +      + +    IH  + D F   +  
Sbjct: 282 HSANAIVWDWNLSSQDLEFIGQSRDTLALDFANQPMSTLADLKSLIHAEELDAFERAIAR 341

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +   +  L+   R+R  D  + W ++  + +++        +G   D+ ++ +    I 
Sbjct: 342 HISKDK-PLEMHCRLRQKDGGYRWFLLNGQLLTSGQSGNQHIVGSLLDMNDRIEQEHQIW 400

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LT +PNR  F  R    L+          +V ++DI+ +K+IND  G   GD 
Sbjct: 401 RMAHLDALTQLPNRSLFNQRFEEKLNGKNKRPEP-FSVAILDINDFKQINDARGHVAGDR 459

Query: 591 VLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           +L      +   +   D ++ARL G+ F +++    +       +  +       +    
Sbjct: 460 LLTEFAELLQAHITGDDSLVARLGGDEFAMLVSPALSDEDFQILSDKLINDARQIVYTDS 519

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRVSSFRSDRV 705
            +  V  S+G A +    I+  ++L+ A+ AMY AK          +    +   R  R 
Sbjct: 520 GDRGVQFSLGMARYPEHGISMEDLLRAADTAMYRAKRDKITGSRYQLFHAGMDEIRIQRA 579

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ +  A+EN E  L+Y PI+ L   ++V  EAL++W  P    ++  + + +AE+  
Sbjct: 580 QLRDLVAQALENDEFRLMYQPIVALGSGDVVSAEALLRW--PSGPGVAIPDIISVAEDSG 637

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  ++  + ++    +   +D        + +N++       ++   +           
Sbjct: 638 LILKLSEIIFDQAFSLLARLQDLGLKQ--TVAVNLSGVQFRYQDIAAILTNYARAHGADT 695

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R+ +  +ES+ + N E+++  +  L + G+ + +DDFGT  S L+YL  +  D +K + 
Sbjct: 696 HRLIIEITESIFLDNIEKTQKTIRELSQHGVRVAIDDFGTGYSSLAYLQKLTVDWIKVDQ 755

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +T   E      I+ +I+ M + +   ++A+ +    ++++L  MGC+ +Q  + + P
Sbjct: 756 SFITNINESNPNYQIVNAIVQMGQALNMGLVAEGVENLAELEQLAEMGCERVQGYYFSKP 815

Query: 944 LGFNSILKL 952
           L  +  +  
Sbjct: 816 LSDSDFIAF 824


>gi|153001785|ref|YP_001367466.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151366403|gb|ABS09403.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 684

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 211/431 (48%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKR-SFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +   +     ++RL G+ F I+  + +   + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDKLLIQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +++  EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKVIACEALIRWQ-KDGRLISPVSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + +  W+ + N   I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCKVLREWQKKYNY-AIPIAINVASQQFADASLVPDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAIAKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++       AI  +I+ + K +  TI+A+ I  E  +  L    C   Q  + +
Sbjct: 597 KIDRCFVSDL-PGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKENQCQVGQGFYFS 655

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 656 QPLPQAEFEAL 666


>gi|330890801|gb|EGH23462.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 703

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 207/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  DNLTG+PNR    DR+   +            +M +D+D +K +ND  
Sbjct: 254 EANQELTHLALHDNLTGLPNRVLLTDRIEQAMKKVCESGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G  F  +L+  ++       A      I  
Sbjct: 313 GHHTGDLLLRQVALRLRNNLHRHDTLARIGGGEFV-LLVELHDPQDALAVATRQVNEIGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGNTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +A
Sbjct: 432 RNQLQMSQDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETVVQKRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 671 LGYPLPAEQFLDEIRA 686


>gi|332524404|ref|ZP_08400618.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrivivax benzoatilyticus JA2]
 gi|332107727|gb|EGJ08951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrivivax benzoatilyticus JA2]
          Length = 960

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 148/731 (20%), Positives = 296/731 (40%), Gaps = 23/731 (3%)

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
           S           +         ++ L+I     +       +  +           +   
Sbjct: 217 SPWWAGSLQPGALATGTWLATQAAMLLILHASAVEARWREQRWEWALDG---SRLGVADW 273

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
             +     AS A  TLA           +   + +      + A I +        + + 
Sbjct: 274 HVHRGEGFASTAWRTLAPAQAAAWSPATWLA-QVHPDDRSHLEAAIALIDSGQAGRLPLE 332

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAV-LGSGDI 417
            R+ +D         L++I         + +       +     D +R S ++     + 
Sbjct: 333 LRMRHDGGWRWRQATLLVIERGPDGRPARILATLADIEERHEAQDRQRLSASLFQHLHEG 392

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +   D     +   P    ILG+A   + G + + L     + R   +          +G
Sbjct: 393 LLVTDAELRVLEANPAYGEILGVAREQLIGTVPSLLSPAPDDARARQQRAEMWAALREQG 452

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             + E   RAAD     +   I  +  ++  I  ++ + +DITEQ++  E +   A  D 
Sbjct: 453 SWRGELDERAADGSLRTLQATISAVPGADRRISHHVLVISDITEQRQQRERLERQALYDE 512

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PNR      L   ++++  D      V  +D+D++K +ND  G A GD +LV L  
Sbjct: 513 LTRLPNRAHLSTLLAEAMEVADRD-GFLVAVCYLDLDRFKPVNDRFGHAAGDRLLVELAS 571

Query: 598 RIGELLKFP----DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--E 651
           R+   L+      D+ ARL G+ F ++L    +  ++    + + + ++ P  +      
Sbjct: 572 RLRNTLRRRDQWADVAARLHGDEFVLLLR-AGSIDEVRRAIVRVLRVLSQPYLVDSSAAP 630

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKE 709
           + +T S+G   +   +     +L++A+ AMY AK  G N    F  +S R      M +E
Sbjct: 631 VPITTSLGATLYPLDRSDPEALLRHADHAMYEAKQSGRNGYVLFDPASRREREALAMAQE 690

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A++  EL L Y P + +    +VG EAL++W+HP  G +    F+   E+  ++  
Sbjct: 691 EIEQALDRGELMLRYQPKVDMRSGRVVGFEALLRWEHPFKGELPPHSFLPCIEDDRLLVR 750

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS-PSRI 828
           +  ++L +    +  WR         + +N++++ L   +    + ALI++  +     +
Sbjct: 751 VGDWVLSQALEHLAQWRRDGLD--FAVGVNVSARHLRRPDFAAQLAALIARHGHDLAPYL 808

Query: 829 KLSFSESVVM--GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           +L   E+  +   +   +   +   R++G+   LDDFGT  S L YL  +P DT+K + S
Sbjct: 809 ELEVVETAAIAAEDSPTTTEQMKLCRELGVRFALDDFGTGYSPLRYLKDLPADTLKIDRS 868

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +       +   I+  II +A+    +++A+ +      + L  +GCD  Q + +ASPL
Sbjct: 869 FVHNMLDDAQDRGIVEGIISLARTFGCSVVAEGVETPAQARMLLELGCDIGQGTGIASPL 928

Query: 945 GFNSILKLLKE 955
               + + +++
Sbjct: 929 RAQQVAQWVRD 939



 Score = 97.7 bits (242), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 88/317 (27%), Gaps = 11/317 (3%)

Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNR 277
           L     +A+  +  I          ++    +       +   L+   ++  F  L  ++
Sbjct: 77  LAAAATLAFGPVAAIVAAGALRWTALSPTV-DQAGPVLAAWATLAVGALLTAFPLLALDQ 135

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
                     +          ++       A++     A+        + +         
Sbjct: 136 ------RAMAALAKPARAASALALIGGATAATVLLCMPANHAGALAPLLPFLPPLLLVTL 189

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
             L  A +                          +    L       T    +L     +
Sbjct: 190 AALHGAPLAGAALLACTTAGALATASGSPWWAGSLQPGALATGTWLATQAAMLLILHASA 249

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                  +R   A+ GS   V DW + R     +    T+    + +       WL  +H
Sbjct: 250 VEARWREQRWEWALDGSRLGVADWHVHRGEGFASTAWRTLA--PAQAAAWSPATWLAQVH 307

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIA 516
            +DR +    +      + GRL  E R+R  D  + W    +  +    +G   R +   
Sbjct: 308 PDDRSHLEAAIALIDSGQAGRLPLELRMRH-DGGWRWRQATLLVIERGPDGRPARILATL 366

Query: 517 NDITEQKKSLEGILCNA 533
            DI E+ ++ +    +A
Sbjct: 367 ADIEERHEAQDRQRLSA 383


>gi|192359980|ref|YP_001983291.1| sensory box protein [Cellvibrio japonicus Ueda107]
 gi|190686145|gb|ACE83823.1| sensory box protein [Cellvibrio japonicus Ueda107]
          Length = 1306

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/447 (27%), Positives = 221/447 (49%), Gaps = 10/447 (2%)

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             E I   AF D LT +PNR+  +DRL  I+  SA     +  ++ ID+D +K +ND  G 
Sbjct: 858  QEQIYRLAFFDPLTRLPNRRMLMDRLRLIIAQSARTSQ-QGALLFIDLDHFKLLNDTRGH 916

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSL----KIADFAIAMRKS 640
             +GD +LV +  RI  +++  D+ ARL G+ F ++  +   +      +    A  + + 
Sbjct: 917  HIGDQLLVQVAERISSIIRTTDLAARLGGDEFVVVFDNLGTDPDKAALEAKHRAEQLHEL 976

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            I +P  L +     T SIG   + ++  +  ++L++A++AMY AK  G N +  F     
Sbjct: 977  INLPYPLQQSVYHCTISIGVNLFNANNTSIDDLLRHADVAMYQAKDGGRNTIRFFDPHMQ 1036

Query: 701  RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R  I+ DL  A E+      Y+        E++G E L++W HP+ G I+  +F+
Sbjct: 1037 SRLEKRAEIEADLRSAHESGTQLTPYYQAQVNHTGEVLGAELLLRWIHPRKGTIAPGDFI 1096

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             +AE+  +I AI   ++    + +  W+ Q     + + +N++      +   E + + +
Sbjct: 1097 PVAEQTGLIVAIGRQVIRMACKQLQCWQQQPGFGHLTLAVNVSPIQFNQSSFVEDVISCV 1156

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 +P+ +KL  +ES ++ N E S   + RL++ GIS  +DDFG   S LSYL  +P 
Sbjct: 1157 LDYDVNPNHLKLELTESSLLKNVEHSIEKMQRLQEFGISFAMDDFGIGYSSLSYLKKLPL 1216

Query: 879  DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + + +           I+R+II MA N+   +IA+ +  E+  + L + GC   Q
Sbjct: 1217 DQLKIDRTFVRDITIDPNDAIIVRTIIAMAANMNLNVIAEGVETELQKQFLEQNGCLLFQ 1276

Query: 937  DSHVASPLGFNSILKLLKERFPLVKNT 963
              +   P+  ++  +L+     L++++
Sbjct: 1277 GYYFGKPMPLDAFEELIHMPQQLIRHS 1303



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q ++        +         A + +    W+WD   D    +  +  + GL +  + G
Sbjct: 568 QELMERRQIEGALRQSERLLESAQIMARLAYWEWDPQDDSYKFSRSMVELFGLPAAQLTG 627

Query: 448 PIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            ++ +L        R +F   L + + ++         +       +W  ++     +++
Sbjct: 628 QLKPFLAGCMPAGQRRHFIQSLSTSLEHKTPIATEINLLLH--GHPYWFAVQGNIDEHAD 685

Query: 507 GDILRYIGIANDITEQKK 524
           G  L   G   DITE+K+
Sbjct: 686 G-TLCMRGTLQDITERKR 702



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/390 (11%), Positives = 104/390 (26%), Gaps = 49/390 (12%)

Query: 216 SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
            +L     M                ++ ++  G L  W   S     ++ ++  F     
Sbjct: 124 FLLFSALGMIVSAATGSLSLLLLGREVFSVAQGFLNWWMGDSLGVFLAAPLLVNFSLGEC 183

Query: 276 NRWHAK---VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
            R  A+   +  I  + +   A+ F ++       A +  + +         +       
Sbjct: 184 RRALAQPRELILIILASLVVAALCFPLNNLTSHSPAGVIHLPILFTSFICMAWAGLRF-- 241

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRL-----DNDIIQPALVGGLVLIVILIGFTVI 387
           G   A L    + L+ +      +              I        L+ ++I    T +
Sbjct: 242 GLPGASLSTLGFGLVALVSTIQGLGPLSFDSTQLSAWMIWIYGFCMTLLGLMITSAHTQL 301

Query: 388 QHV-LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP-------DIATILG 439
           +         S       +     +    D++ + +     +               + G
Sbjct: 302 RTASHQLDETSHEQAQQKKHLEAIIHAIPDLLIETNREGHCLWANGPTHWHGLHSHELPG 361

Query: 440 LASGSMHGP--IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
                +      + W   IH  D           +      L YE  +  +  Q      
Sbjct: 362 RELRELLPSDAWQTWSQAIHEADDWGISQGKSIHLIQGTQSLWYELSIAKSSGQ------ 415

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             RP  +      R++ +  DIT++    +             + N Q F +      ++
Sbjct: 416 --RPHED------RFVCLVRDITKRVNIYQAD-----------LANEQRFRNIFEATRNI 456

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
           +    N    V+  +    K   D+ G + 
Sbjct: 457 AVQGYNRYHEVIFWN----KASEDLYGFSA 482



 Score = 41.9 bits (97), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLAS 442
             +++ +       Q   ++ +R       +    V  ++   + +        + G ++
Sbjct: 423 VCLVRDITKRVNIYQADLANEQRFRNIFEATRNIAVQGYNRYHEVIFWNKASEDLYGFSA 482

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G     L  I    R++    ++++  + +     E  +  A  +  W+      +
Sbjct: 483 QEAMGQKLEHL-IIPPFMRNDVFNAIENWHLHNQAIPSGELPLHNAKGEEVWVYSNHVMI 541

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  +   +  + I  D++ Q+ +L+ +   
Sbjct: 542 NTLDNKEMYCLDI--DLSTQRDALQQLEQE 569


>gi|330888074|gb|EGH20735.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 951

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 235/445 (52%), Gaps = 7/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + ++  A  D+LT +PNR    + L  I+    +  +   +V+ ID+D++K +N
Sbjct: 503 ERYDAKKKLIYLAENDSLTHLPNRWFLSNYLREIISRKTSVPDA-VSVIFIDLDRFKAVN 561

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
           D +G +VGD +L+   RR+ + +    ++ RL G+ F I++     +   I   A  + +
Sbjct: 562 DTMGHSVGDQLLIQAGRRLKDCIDENSVVERLGGDEFSIVVTHHVYSESLIKTLANHVVE 621

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P NL  +++ V+AS+G A++      +  +LKNA+ AMYHAK  G N+ + +  + 
Sbjct: 622 ALGKPFNLGGQDVFVSASVGIANYPFDGRDTGVILKNADTAMYHAKKSGRNNYKFYNATM 681

Query: 700 FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S    +  +  L  A++  E  L + P + L D  I GLEAL++W+HP+ G +S +EF
Sbjct: 682 NESLVRRLQTETLLRGALDRDEYILHFQPKVSLTDGRISGLEALLRWNHPEHGMVSPAEF 741

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  +++  +   I SW ++ N+  + I IN++ + L    L E ++ +
Sbjct: 742 IPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAINLSVRQLQVKGLAETIKHI 800

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     +P+ ++   +ES++M +PE +  +L  ++  GISL++DDFGT  S L+YL   P
Sbjct: 801 VEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISLSVDDFGTGYSSLAYLKRFP 860

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +       +  AI R++I +A  +   +IA+ +     +  L   GCD +
Sbjct: 861 LDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAEGVETVDQLALLVTYGCDQM 920

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    + P+       ++K    L 
Sbjct: 921 QGYLFSKPVIIEECASMIKSSRSLS 945



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
             ++    AV  +   +++  + I   +A   +L +        G +    +L+    ++
Sbjct: 139 LVIQATLFAVFFLLISLILMGFMIKRSLAHLGKLHSYE-AEIASGAVAAEAMLVADAPME 197

Query: 389 HVLATGYFSQGIFSDGERQSL--------------AVLGSGDIVWDWDIVRDRVTTTPDI 434
              A    ++   S      L              A+     IV +              
Sbjct: 198 IQEAIKAVNRTAASMRNHFGLRIDSLMNTLVQHKNALDEVS-IVCEVSASGRITYVNERF 256

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRAADNQF 492
                 +   +          + I++     +                 E R+     + 
Sbjct: 257 VKSSQHSRAELLE--------LKIDEVWTGMSSASEPWRWVPENEVWNGEVRLSGRTGKD 308

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-- 550
            W    I P+ +  G + +YI I  DIT +K+    IL N+ + NL  +  +Q+  +   
Sbjct: 309 AWHRRTIIPILDDMGGVEKYICIDIDITVRKEFEVAILDNSRRQNLIALFGQQALTEENV 368

Query: 551 --LTT--ILDLSATDDNLRPTVMVID 572
             L     L  +      +  ++V+D
Sbjct: 369 SALGELAALTAAQGLTLSKAALLVVD 394


>gi|27382262|ref|NP_773791.1| hypothetical protein bll7151 [Bradyrhizobium japonicum USDA 110]
 gi|27355433|dbj|BAC52416.1| bll7151 [Bradyrhizobium japonicum USDA 110]
          Length = 776

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 139/730 (19%), Positives = 287/730 (39%), Gaps = 48/730 (6%)

Query: 247 SGELLIWRACSEIALSSSLIIF----------LFMYLHWNRWHAKVGYITFSGIACIAIL 296
           +G++ +W     +    +   F             +        +      S  A + I 
Sbjct: 51  TGDVWLWPIAFLLIAIGTARAFQMRGYENRTQGLSFEEAKHLEPRYWIGALSYAAVLGIW 110

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
             +  Y            L   +             G  R +    A     +    L  
Sbjct: 111 AFVVIYNNEDP---VADMLCVAIGIGYTAGGAARNYGQPRVIQWHVALACGPMSLALLLH 167

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                +   I+      GL  I + +   +    L + +    + S   +   A+     
Sbjct: 168 GGFYHIGLAILLVFFFIGLKNINLSLH-AIFVKALTSSFRESALAS---QFDTALNNMPH 223

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +  +               ++ L    +       +  +      +      S      
Sbjct: 224 GLCMFRADGRLAVMNHRFGELMSL-PEDLVKRGATAVDIV------SACVAAGSISAESG 276

Query: 477 GRLQYEF---RVR---AADNQF---HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            ++  E    R+R    AD        +    +PM+         + +  DITE+  +  
Sbjct: 277 NQILAEIEHARIREIATADPNPARGRSLAWTFQPMTGG-----GTVLLLEDITERTNAEA 331

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A  D+LT +PNR SF D +  +L +S   + L   ++ +D+D++K++ND LG   
Sbjct: 332 RISHLARYDDLTALPNRVSFRDEIERLLAISHHAERLS-ALLFVDLDQFKQVNDTLGHPC 390

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L ++  R+ E+L+  D +AR  G+ F +     ++    A  A  + + ++    +
Sbjct: 391 GDQLLCAVANRLREMLRPEDFVARFGGDEFVVFQQDISSPEDAASLARRIVERLSERYRI 450

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
               + + AS+G A  +   I++  +LKNA++A+Y AK  G      FR     +     
Sbjct: 451 DNHLVEIGASVGIALTSPDGISADTLLKNADMALYRAKADGRGTFCFFRDEMAATVEARR 510

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A+ N E  L Y P++ L   +I   EAL++W+HP  G +S  + + +AE++ 
Sbjct: 511 ILELDLRKALANEEFELFYQPLVNLKSGKITTCEALLRWNHPVRGTVSPVDIIPVAEDMG 570

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L R   + + W +      + + +N + +     ++   ++  +  +    
Sbjct: 571 LIVDLGRWILRRACMECMKWPE-----GVSVAVNFSPQQFHQRDVLSEIRYALEVSGLPA 625

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R+++  +ES ++ N + +  +L +L  +G+ ++LDDFGT  S LSYL   P   VK + 
Sbjct: 626 HRLEIEITESSLLRNTQLTHDILSQLHALGVRISLDDFGTGYSSLSYLHNFPMQKVKIDR 685

Query: 886 SLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG-CDYIQDSHVASP 943
           S + G    R   +LR +  ++ ++   ++ + I     ++ ++  G     Q    + P
Sbjct: 686 SFLEGIDTDRPLTLLRGVARLSADLGMAVVVEGIETNEQLELISADGTVSEAQGYLFSRP 745

Query: 944 LGFNSILKLL 953
           +    + +LL
Sbjct: 746 VPAVRMRQLL 755


>gi|218892320|ref|YP_002441187.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           LESB58]
 gi|296389888|ref|ZP_06879363.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           PAb1]
 gi|313110414|ref|ZP_07796299.1| putative integral membrane sensor domain-containing protein
           [Pseudomonas aeruginosa 39016]
 gi|218772546|emb|CAW28329.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           LESB58]
 gi|310882801|gb|EFQ41395.1| putative integral membrane sensor domain-containing protein
           [Pseudomonas aeruginosa 39016]
          Length = 685

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 223/436 (51%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++   ++  A  DNLT +PNR    DRL   +  +  DD  R  V+ +D+D +K +
Sbjct: 250 TSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDR-RFAVLFMDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD +L+ +  RI   ++  D +ARL G+ F +++         A  A  + K
Sbjct: 309 NDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVK 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  +   E+ ++ASIG A +     T  E++ NA+ AMYHAK +G N    F   +
Sbjct: 368 RISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++   +++ +  DL  A+E  +L L Y P +   +  +VG+EAL++W+HP+ G I   +F
Sbjct: 428 NANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMVGVEALLRWEHPQHGLIPPDQF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+   R +  W D        I +N+++       L + ++  
Sbjct: 488 LPLAEKTGLIVQIGEWVLDEACRQMRLWLD-GGHAEWNIAVNLSALQFAHAGLVDSVRNA 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS + L  +ES  M + + S ++L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +          AI+ +I+ + + +   I+A+ +  E   + LTR+GC+ +
Sbjct: 607 ASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +L 
Sbjct: 667 QGFLLGRPMPAEQLLA 682


>gi|218532674|ref|YP_002423490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218524977|gb|ACK85562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 129/553 (23%), Positives = 253/553 (45%), Gaps = 25/553 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +R       + + +         V+     A ++GL   ++ G     L      D  
Sbjct: 248 EADRLHSLANAAVEGLVVCTGDT-IVSANRSFAKLVGLPQAALAGTA---LSAYLPGDAT 303

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                  +        ++ E R   AD     + + ++P+ ++ G     + I  D+  +
Sbjct: 304 RL-----ALASQPERPVEAELR--QADGTLVPVEVIMQPVEHA-GRPHYAVAI-RDLQAR 354

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I   A  D LTG+ NR SF  RL   +  +A     +  V+ +D+D++K++ND+
Sbjct: 355 RQAESQIQFLAHHDALTGLANRTSFSKRLDQEM-RAADVGGRKLAVLCLDLDRFKEVNDL 413

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L S+   +   L    ++ARL G+ F +++       +    A  + +++ 
Sbjct: 414 FGHAAGDAMLESVAHIVSAELDDSQMMARLGGDEFAVLMP-CAGPSEAGRLAERILEALR 472

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
               +      +  SIG A +       + +L NA+ A+Y AK  G      F       
Sbjct: 473 SG-RVEAGGPQIATSIGVALYPDDARERAALLSNADTALYRAKSEGRGTYRFFEAKMGTE 531

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R +++ DL  AV   E++LVY P   +    ++G EAL++W HP+ G +S + F+ I
Sbjct: 532 VRERRLLEHDLRHAVARGEMHLVYQPQTDVSLGAVIGFEALLRWKHPERGYVSPAVFIPI 591

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  I  ++L    R+  SW +     P+ I +N+++  +        +  ++ +
Sbjct: 592 AEESDAILQIGEWVLREACREAASWPN-----PLSIAVNVSAVQIHSPHFVGLVHEVLLR 646

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P R+++  +E+ ++ +P R+ L L +L+ +G+ + +DDFGT  S LS L   PFD 
Sbjct: 647 TGLAPDRLEVEVTETALINDPNRALLTLRQLKALGLRIAMDDFGTGYSSLSNLRSFPFDK 706

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    S E+  AI+RS++ + + +   ++A+ +  + ++  L    C   Q  
Sbjct: 707 IKIDQSFVRSVDSNEQTAAIVRSVLGLGRGLGLPVLAEGVETDAELSFLVAEQCHAAQGY 766

Query: 939 HVASPLGFNSILK 951
            +  P   +   +
Sbjct: 767 LMGRPSPIDRFTQ 779


>gi|302186201|ref|ZP_07262874.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 653

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 111/435 (25%), Positives = 209/435 (48%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  DNLTG+PNR    +R+   +  +         +M +D+D +K +ND  
Sbjct: 204 EANLELTHLALHDNLTGLPNRALLTERIDQAMKRATESGGC-FALMFMDLDGFKPVNDAF 262

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+   N       A      +  
Sbjct: 263 GHHTGDLLLRQVALRLRNSLHRRDTLARVGGDEFV-LLVELQNPEDALTVARRQVNEVGN 321

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P N+ E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 322 PFNIGEHQLQISLSIGICMYPGNGSTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 381

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    M    VG EAL++W+HP+ G +    F+ +A
Sbjct: 382 RNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPEQGILGPDLFISMA 441

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++     + L   +   +++ 
Sbjct: 442 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYSHWRIAVNLSALQFCHSGLVTAVADTLARH 500

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 501 QLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 560

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 561 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFL 620

Query: 940 VASPLGFNSILKLLK 954
           +  PL     L+ ++
Sbjct: 621 LGYPLPAQQFLEEIR 635


>gi|91780085|ref|YP_555292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91692745|gb|ABE35942.1| Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with
           PAS/PAC and GAF sensors [Burkholderia xenovorans LB400]
          Length = 847

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 225/446 (50%), Gaps = 8/446 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++K+   I   AF D LTG+PNR  F  +   +L+ +   +     ++ ID+D +K++N
Sbjct: 404 EREKARMRIHQLAFHDTLTGLPNRNMFETQAQQLLNDARRTER-ELALVFIDLDHFKRVN 462

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD+VL    RR   +L+  D+L RL+G+ F  IL       +       +  +
Sbjct: 463 DTRGHATGDEVLCETGRRFKSVLRDGDLLGRLAGDEFVAILPHCG-VHQATGIVERLLAA 521

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
            A P+ +    I  +ASIG A + +       +L+ A++AMYHAK RG  H   FR    
Sbjct: 522 TAPPVVVAGAPIHASASIGIAMYPADGEHVPTLLRQADIAMYHAKARGRGHFCFFREEMS 581

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEF 757
               ++ M++ DL +A+++  L L Y P     +  ++ G+EAL++W+H   G++    F
Sbjct: 582 RNIQEQAMLEADLRVALKHDLLDLWYQPQFDAANGHVLSGVEALLRWNHATLGSVPPVRF 641

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +++AEE  +I  +  ++ +R  R +  WR +    P  + IN+++ D  D+ L E +   
Sbjct: 642 VVLAEECGLIGELGKWVTQRACRQLADWRARGVEIP-RVSINLSASDFRDSTLAERVART 700

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +      P  + L  +ESV++G+      ++  L ++GI L+LDDFGT  S L YL  +P
Sbjct: 701 LLAHGLQPHDLTLEMTESVMLGDEPGVLSMIDELHRLGIQLSLDDFGTGYSSLGYLHRLP 760

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +          A+  +++ + +++   ++A+ +  +   + L   GC  +
Sbjct: 761 LDELKLDRSFVRDLDHSDSARALTSTVLRIGESLNIKVVAEGVETDTQRQFLVEHGCPVL 820

Query: 936 QDSHVASPLGFNSILKLLKERFPLVK 961
           Q   +A P+  + + + L+      +
Sbjct: 821 QGYLLARPMAPHLLEEWLRAAHAGSR 846



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIND 460
            + ++    V GS + +    +          +  +LG A+  + G  +      +H N 
Sbjct: 122 EEWQQLLRVVNGSDNAIIVASLDGSISFINSGVTRMLGYAAAEVQGLRLVEPFAGVHTNM 181

Query: 461 --RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +  ++             + +  V     +  W+ + I  ++++ G  +  + +  D
Sbjct: 182 AAVERIQSAAREP-STPDHPFRQDLLVYTKGGRPLWVNVGITVITDNAGAPVNLLAVLTD 240

Query: 519 ITEQKKSLE 527
           IT  +   E
Sbjct: 241 ITLTRMREE 249



 Score = 39.9 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 28/125 (22%), Gaps = 12/125 (9%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTI 467
            +    D V   D         P    + GL + ++ G     L    I           
Sbjct: 13  VLAQIPDAVVLVDEDGAIGFFNPAAEALWGLTAAAVLGADAGMLLPRGIQP--------A 64

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                           ++   D       + I       G   R      DIT+Q +  E
Sbjct: 65  GHGVQTGNVDGPGLALQIERNDGVMRRGQMSIHG-FEVAGRRFRA-AFIRDITDQHRQCE 122

Query: 528 GILCN 532
                
Sbjct: 123 EWQQL 127


>gi|300693325|ref|YP_003749298.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
 gi|299075362|emb|CBJ34656.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum PSI07]
          Length = 895

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 142/582 (24%), Positives = 263/582 (45%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            + +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 316 VSALAKLLRLEGEYRQARDLRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGT 375

Query: 444 SMHGPIRNWL-PYIHINDRDNF-RTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRI 499
           S     R  L   +   D     R    S +  R GR        + A + Q  W+   +
Sbjct: 376 SWKNRTRLMLGDIMLAEDGSILPRAAWPSTLAARTGRAVNNVVVGMPAGNGQIVWLRESV 435

Query: 500 RPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +       + I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 436 LPMFSQDSASPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 495

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ + +D +K +N+ +G  +G+ VL    +RI   +    +LARL G++F 
Sbjct: 496 STGQ---AALLYVGLDHFKTVNEAMGHHIGNQVLNVAAQRIRADVGQRALLARLGGDQFC 552

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +   +   +    A  +  ++A P +  ERE+ ++ASIG A +      ++ ++  AE
Sbjct: 553 VAI---DTPDRAETLAQQVLDALAKPFSGGEREVHLSASIGVAMFPEDGSDAATLVSRAE 609

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+   ++ LVY P   L   E+V
Sbjct: 610 AAMYRAKENGRNRMARYSRALETQLLRRFTLNERMRRALARGQVRLVYQPKYALDTRELV 669

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L++      +W          I
Sbjct: 670 AVEALMRWSDPELGAVSPTEFIAVAEESGYIVELGRWALQQACAQGQAWERDFGFTG-RI 728

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   +   +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 729 AVNVSARQCDAGVIERDVDDALGTSGLRPSRLELELTESVLLADRLSTQRLLTSLAARGV 788

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            ++LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 789 RISLDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 848

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ R
Sbjct: 849 AEGVETLEQTAFLAAHACDEVQGFLFGRPLEVPAMEGLLRAR 890


>gi|116049677|ref|YP_791518.1| membrane sensor domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584898|gb|ABJ10913.1| putative integral membrane sensor domain [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 685

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 223/436 (51%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++   ++  A  DNLT +PNR    DRL   +  +  DD  R  V+ +D+D +K +
Sbjct: 250 TSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDR-RFAVLFMDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD +L+ +  RI   ++  D +ARL G+ F +++         A  A  + K
Sbjct: 309 NDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVK 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  +   E+ ++ASIG A +     T  E++ NA+ AMYHAK +G N    F   +
Sbjct: 368 RISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++   +++ +  DL  A+E  +L L Y P +   +  +VG+EAL++W+HP+ G I   +F
Sbjct: 428 NANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMVGVEALLRWEHPQHGLIPPDQF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+   R +  W D        I +N+++       L + ++  
Sbjct: 488 LPLAEKTGLIVQIGEWVLDEACRQMRLWLD-GGHAEWNIAVNLSALQFAHAGLVDSVRNA 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS + L  +ES  M + + S ++L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +          AI+ +I+ + + +   I+A+ +  E   + LTR+GC+ +
Sbjct: 607 ASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +L 
Sbjct: 667 QGFLLGRPMPAEQLLA 682


>gi|327398865|ref|YP_004339734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hippea
            maritima DSM 10411]
 gi|327181494|gb|AEA33675.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Hippea
            maritima DSM 10411]
          Length = 1144

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 135/552 (24%), Positives = 243/552 (44%), Gaps = 18/552 (3%)

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRT 466
            S+A+      V   D     +    +   + G     + G   + +    H  D++    
Sbjct: 606  SIALNSGFSYVVILDRYFRIIYMNEEALKVHGYTREKITGKRHSIFSSKTH--DKEFLLR 663

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +  +    +       F  R  D +       I P    N  I  YI +  DIT++K+  
Sbjct: 664  LAKTLRKGQI--FSDIFTYRTKDGRLIEGYTTIIPYK-ENNRIQYYIAVGKDITKEKELQ 720

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            E ++  +  DNLT +P ++ F+ +   IL  +  +      +  IDI+    IN + G  
Sbjct: 721  EKLIFLSKYDNLTKLPKKEEFIKQANNILKQNKENTICCMAI--IDINNCSYINQIYGYK 778

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GD ++     R+ +LLK  DI  RL G++F +++ +  +              I  PI 
Sbjct: 779  TGDLIIQKTATRLTQLLKNNDITGRLEGDKFTLLIENLPSEEDAVVRLNNALNEIVKPIK 838

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704
            L +  I  T  IG + +      + E+L  AE A+  AK  G N ++ FR    +     
Sbjct: 839  LEKSTIIPTFYIGASFYPLDGKNAEELLIKAEAALMSAKRSGENEIDFFREKIQQKAVKI 898

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            V ++  L  A++N E  L Y P   +  ++I G E+L++W H     I   EF+ + E  
Sbjct: 899  VKLRNKLQEAIKNKEFTLFYQPYYDVKTQQIAGAESLLRWIH-DGKVIPPLEFIDVLENS 957

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  +   +++   + I S + +     I I INI+ K    + +   ++  +++    
Sbjct: 958  NLIMDVEEQIIQEAIKTIASLKRE-----IPISINISPKSFKRDYIVPFIKETLNEYNIR 1012

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
               + +   E V + N E ++ ++ RLR  GI + +DDFGT  S L+Y+  +P D +K +
Sbjct: 1013 GELLTIEIVERVFLENTEYTKTIMERLRNFGIKIAVDDFGTGYSSLTYIKELPIDIIKID 1072

Query: 885  GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S +     +EK + +++ II +A+  +   IA+ +  +     L  MGC+YIQ    + 
Sbjct: 1073 MSFIRNMVSSEKDLKLVKLIIDIARQFDLKTIAEGVETQEQFNILREMGCNYIQGYLFSK 1132

Query: 943  PLGFNSILKLLK 954
            PL   +  KLLK
Sbjct: 1133 PLNKETFQKLLK 1144



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    + V   D              I G     +     +++     +  +       
Sbjct: 305 VLDRIDEGVIITDNDCKIEFINKAAERITGFELKELLTKTPSFVT----DGINECTQKNQ 360

Query: 470 SFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                  + G+   E  +   D     + + + P+   +  +++++    DI+ +K   E
Sbjct: 361 KIKENVVKAGKFNTETTIIRKDKTSIPVELTVVPIR-KDKKLIKFVSFIKDISLRKLQEE 419

Query: 528 GILCN 532
            I   
Sbjct: 420 KIAQL 424


>gi|172062494|ref|YP_001810145.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|171995011|gb|ACB65929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 667

 Score =  462 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/545 (22%), Positives = 242/545 (44%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFAS 178

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R     E  +   +    +        S S  D    I    D+TE++ + + +   A 
Sbjct: 179 NR-SFAVERYINTVNGPRLFQFRNKFVQSGSGADEQYLICSGIDVTEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   L     D   +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDMLTGLPNRHAISERIGAALAADRADMRGQVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +++ I   L     LARL G+ F ++         +   A  + + +  PI+L   EI  
Sbjct: 298 VSKIISGCLPSGATLARLGGDEFLVLFEHGTRP-LLEATAQIILERLRTPIHLGLMEIYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A +     +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ L   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDLASGDVRSVEALIRWQSPDRGLVAPIEFIHFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + I +N++++ L D  +     ++++     PS + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLDVRIAVNVSARQLQDMNIVHQFASILASAGLKPSLVDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES  + + E +  L+   R++G  + LDDFGT  S LS L  +P D++K + S +TG  
Sbjct: 535 TESSFIEDEETAHELMKEFRQLGAKIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFITGID 594

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +AK +   ++A+ +    + + L ++  D+ Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLAKALSFAVVAEGVETPGEAEFLKQVDVDHAQGFYFARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 GWLAE 659


>gi|170697268|ref|ZP_02888362.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
 gi|170137888|gb|EDT06122.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
          Length = 667

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/545 (22%), Positives = 241/545 (44%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFAS 178

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R     E  +   +    +        S S  D    I    D+TE++ + + +   A 
Sbjct: 179 NR-SFAVERYINTVNGPRLFQFRNKFVQSGSGADEQYLICSGIDVTEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   L    TD   +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 298 VSTIISGCLPSGATLARLGGDEFLVLFEHGTRP-LLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A +     +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ L   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDLATGDVRSVEALIRWQSPDRGLVAPIEFIHFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + + +N++++ L D  +     ++++     PS + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLDVRVAVNVSARQLQDMNIVHQFASILASAGLKPSLVDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES  + + E +  L+   R++G  + LDDFGT  S LS L  +P D++K + S +TG  
Sbjct: 535 TESSFIEDEETAHELMKEFRQLGAKIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFITGID 594

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++ S++ +AK +   ++A+ +    + + L ++  DY Q  + A P+   +  
Sbjct: 595 RNPRSQALVSSVVSLAKALSFAVVAEGVETHAEAEFLKQVDVDYAQGFYFARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 GWLAE 659


>gi|150389257|ref|YP_001319306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alkaliphilus metalliredigens QYMF]
 gi|149949119|gb|ABR47647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alkaliphilus metalliredigens QYMF]
          Length = 925

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/552 (22%), Positives = 253/552 (45%), Gaps = 12/552 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
            +  + + V   +            + I G +   + G     +   IH +    +  + 
Sbjct: 378 ILENNTEGVIITNEQGIIEWVNCAFSEITGYSFAEIKGHNYNVFHSGIHSD--IFYEDMW 435

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                  +G    E   +          + I  +SN       Y+ I  D++++K+    
Sbjct: 436 KQIKD--KGSWSGEIWSKNKQGHIFPGWLTINSISNDENHTTHYVSIFKDLSDKKRIDNR 493

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +     +D LTG+ NR  FL +    ++    D   + +V+ ID+  +K+IND LG  +G
Sbjct: 494 MSELQEKDTLTGLYNRNYFLQKTDEYVEKYK-DSGGKFSVVYIDVKGFKEINDSLGHFLG 552

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L+ +++R+  L+    IL+R  G+ F I+        ++  F+  + K I    N+ 
Sbjct: 553 DRLLIEISKRLLHLMDESYILSRFCGDEFVILCKPSILEKEVIQFSKNIFKDIKRSFNIK 612

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVM 706
              + V+ ++G + +      +  +++ A++AMY AK +  +    +     +    + +
Sbjct: 613 NTLLHVSVNMGISRFPEDGTDAETLIRCADIAMYKAKEKLLDEPCLYEHEMAQKIEEKFL 672

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +   L  A+ N+EL + + PI  + ++ +V G EAL++W++P  G +S  +F+ IAE+  
Sbjct: 673 LANHLVEAIVNNELTIHFQPIFEIDNQSVVVGAEALLRWENPVLGMVSPMKFIPIAEQTG 732

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +  ++LE++ R I  W+++     + I +NI+++ L      + +  ++ K     
Sbjct: 733 QIILVGKWVLEQVCRQIKQWKEKGLRI-VPISVNISARQLEQAGFTQMLIDIMKKHNIES 791

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S I+L  +ES+ +G        L ++ + G+ +++DDFGT  S L  LG +  D +K + 
Sbjct: 792 SLIELEITESISLGEFPVIIKNLKQITQYGVKISMDDFGTGYSSLGQLGLLQLDKLKIDK 851

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +   T   K+  ++ +II MA +++  ++A+ I     +  L  MGC   Q    + P
Sbjct: 852 IFIDEITKGHKKRNLVEAIIAMANSLDLVVVAEGIETVEQLLYLQEMGCQLGQGYLFSKP 911

Query: 944 LGFNSILKLLKE 955
           +  +S  + L  
Sbjct: 912 VDSSSFERFLSA 923


>gi|317131071|ref|YP_004090385.1| diguanylate cyclase/phosphodiesterase [Ethanoligenens harbinense
            YUAN-3]
 gi|315469050|gb|ADU25654.1| diguanylate cyclase/phosphodiesterase [Ethanoligenens harbinense
            YUAN-3]
          Length = 1033

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 154/783 (19%), Positives = 306/783 (39%), Gaps = 46/783 (5%)

Query: 214  RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
            R  +                +    L K+  +     L +   + + L   +++FL  + 
Sbjct: 245  RHVIYRLFACYLISG----GLVNALLQKIFCIEKEIALAYLFSAVLVLIGMILLFLGGFR 300

Query: 274  HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL---YYTYFIIYHG 330
                    +  +  + +  + +L   +     V A +  + +  ++          +   
Sbjct: 301  KTRIPQEFLLAVMAALLIPVILLCFYADGGITVWAFVFPLIVIGLLFNKRVLLVTAVVCA 360

Query: 331  MKGYERAVLLIP------------AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
             +       + P              +++ +    + ++      N + + A+     L+
Sbjct: 361  SQAQLFLWGICPHAGATVNMTDYITRVILIVATSSVCLSANGIYLNRLRENAMHSAGQLL 420

Query: 379  VILIG-------FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVRD- 426
            V  I           I+  +       G F   ++  +A+L   D       +W      
Sbjct: 421  VSEISRSFLAANEETIEEKIRDMLRKTGAFIQCDQAYIALLNKADRQARFSCEWLAEGAA 480

Query: 427  --RVTTTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
              R     +I  +   + + S +G    +L      D       L    G          
Sbjct: 481  PARKQLDENIQKLCRVMQTPSNNGHPVIFLDL---EDILPEAECLRYSPGGTGAHRLVCL 537

Query: 484  RVRAADNQFHWMIIRI--RPMSNSNGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTG 540
             ++  +     ++           +   L  I  I  D   +   +  I   A+ D LTG
Sbjct: 538  PIQKKEETVGLLLFAGVNSAQLWKSFVFLSIISNIVADTANRLDGMRKIRMMAYHDQLTG 597

Query: 541  IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
            +PNR  F  +L   +  +  ++ +   ++ ID+D +K IND LG   GD +L ++     
Sbjct: 598  LPNRVLFKKQLKQAIADARREETI-LGIVFIDLDSFKVINDTLGHEAGDRLLKAVAGIFL 656

Query: 601  ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
              +   DI+ R  G+ F  +     +   +      +  ++  P+ + ++EI +  S G 
Sbjct: 657  GQVWGGDIVCRFGGDEFVFLFEQVPHIDVLLRRLETILDALRRPVRVDDQEICIMGSAGV 716

Query: 661  ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718
            A +     T+  ++KNA++AMYHAK  G N                  +   L  A E  
Sbjct: 717  AVFPRDGDTAGTLIKNADMAMYHAKGMGKNRYALCSSEMKDEMARQGEMINLLYRAQEKE 776

Query: 719  ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            +L+L Y P + L    +VG+EAL++WD P  G I+   F+ +AE+  +I+ I  + L   
Sbjct: 777  QLFLCYQPQVDLKTRRVVGVEALMRWDLPGQGIITPGAFIPLAEQTGLIQPIGEWALLTA 836

Query: 779  ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             R    WR+    PP+ + +NI+ + L      + +  ++ KT   P  ++L  +ESV  
Sbjct: 837  CRQAARWREMEL-PPLRMAVNISVQQLASPHFSQRVADILQKTGLPPRYLELEVTESVAY 895

Query: 839  GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
             +     + L +L+K+G+S+++DDFGT  S    +  +P D +K +   + G   +    
Sbjct: 896  RDIADFPMRLNQLKKLGVSISIDDFGTGYSSFGRIKLLPVDRIKLDIQFVRGIEISAYDR 955

Query: 897  AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            A+  ++I MAK ++  +IA+ +     ++ L+R  CD +Q  +   P+    I KLL+E 
Sbjct: 956  AVADAVIEMAKGLKMKVIAEGMETTAQLEFLSRRMCDEVQGYYYFKPMPAAKIEKLLREN 1015

Query: 957  FPL 959
             P+
Sbjct: 1016 CPV 1018


>gi|254459220|ref|ZP_05072642.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084113|gb|EDZ61403.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 650

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 235/439 (53%), Gaps = 6/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  + +   A  D LTG+PNR  F DRL   +  +  +D  +  +  ID+D +K+IN
Sbjct: 211 ELLEQKDILEHQATHDALTGLPNRILFNDRLEQSIQKAKRND-TQIALFFIDLDHFKEIN 269

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD+VL  +  R+  +++  D LARL G+ F II+    N   +  F+  + K 
Sbjct: 270 DSLGHHIGDEVLKVVATRLNLVIRLEDTLARLGGDEFTIIMEDIKNIQYVIFFSQKILKV 329

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI++  + + +++SIG + +       + +LK A+ AMY AK  G N+ + +     
Sbjct: 330 LLEPISVNNQNLYLSSSIGISLFPQDSTDLNNLLKYADTAMYKAKSEGRNNFQFYSKEMT 389

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +RV++   L  A+   E  + Y P I   ++++VG+EAL++W+HP  G +S ++F+
Sbjct: 390 ELAFERVIMVASLKQAIIKKEFVVHYQPQIDAKNKKLVGMEALVRWEHPTLGLVSPAKFI 449

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I++ ++E     +  WR     P I + +N+A K L  +     ++  +
Sbjct: 450 PLAEDTGLIVDIDILVMEIAMMQVSEWRRDGLNPGI-LSLNLAIKQLNHDTFIIILKHNM 508

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK  +    ++L  +E+ VM  P+ + + L  + ++GI + +DDFGT  S LSYL  +P 
Sbjct: 509 SKYDFKSEWLELEITENDVMRKPKDAAVKLKEISELGIKIAIDDFGTGYSSLSYLKKLPI 568

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +     +E   AI++++I ++K++   +IA+ +  +     +   GC  IQ
Sbjct: 569 DKLKIDQSFIRDIPGSEDDNAIVKAVIAISKSLNLDVIAEGVETKEQRDFVLENGCSKIQ 628

Query: 937 DSHVASPLGFNSILKLLKE 955
             + + PL    I ++LK+
Sbjct: 629 GYYYSRPLPAEGIQEILKD 647


>gi|91792378|ref|YP_562029.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714380|gb|ABE54306.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 678

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ L+  +  S         +  ID+D++K +ND L
Sbjct: 240 QAQNKLRKMATRDPLTGLPNRALLLETLSVTIQRSRVHKR-SFAIFFIDLDRFKNVNDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD  L  + R +   +     +ARL G+ F I+        + ADF   +   +  
Sbjct: 299 GHTIGDQFLARIARILERGIGDKGSVARLGGDEFVILADEIQTPSQAADFVGKLLSQLNT 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHSIHPAASIGISIYPDDCASAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P   L   ++V  EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFVLYFQPKFDLKTNKVVSCEALIRWQQ-DGRLISPMSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + +  W+ + N   I I +N+AS+   D  L   ++ L  + 
Sbjct: 478 EETGIIVPIGRWVIEQSCKVLRDWQRKYNYV-IPIAVNVASQQFADASLVPDIKQLALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++++  +E+ +M + E++   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIRPEQLEIEITETSLMNDIEQAIAKLEQLKSAGFRIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T       AI  +I+ + + +   I+A+ I  E  +  L    C   Q    +
Sbjct: 597 KIDRCFVTDL-PHDSAIASTILMLGQQLNLEIVAEGIENEEQLSWLNDHNCPIGQGFFFS 655

Query: 942 SPLGFNSIL-KLLKER 956
            PL  +    K L  +
Sbjct: 656 QPLPLDEFETKYLAGQ 671


>gi|193222427|emb|CAL63194.2| Conserved hypothetical protein; putative PAS, GGDEF and EAL domains
           [Herminiimonas arsenicoxydans]
          Length = 563

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 130/555 (23%), Positives = 262/555 (47%), Gaps = 13/555 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +    +  +G++V   +   + +  +   A ++G +   + G   N    + ++DR    
Sbjct: 12  QLVSLMEVAGEVVLRLNRQGEILYASRRAAEVIG-SDAQLVG--MNLFELVRLSDRHAIE 68

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   +   +     + RV         +   ++ ++   G  L  + +  DI+ ++K+
Sbjct: 69  ASLRQALLSMQIT---QVRV-HMATHTAVLQFELQMIAYETGSALELLLVGRDISHRQKT 124

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D LT +PNR    DRL+  +  +    N+  +V+ +D+D +KK+ND LG 
Sbjct: 125 EERLRHMATHDELTNLPNRALLADRLSMGMAQARRT-NIGFSVIALDLDGFKKVNDALGH 183

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD +L     R+ E L+  D LAR+ G+ F  +L    +  +I + A  M  ++ +P 
Sbjct: 184 AVGDALLRIAAGRLRETLRDVDTLARVGGDEFVAVLPGAIDEAEIQNVARRMISALQLPF 243

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
            + +  + V+ASIG A +     +  ++L +A+ AMY AK  G      +     +    
Sbjct: 244 EINDDTLYVSASIGVAIYPIHGDSEVKLLAHADAAMYRAKETGKARCIIYNELAFNRIEH 303

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            V ++  +  AV N E  L Y PI+     +I+G EAL++W  P  G +  ++F+ +AE+
Sbjct: 304 DVSMEAAMFEAVRNGEFLLHYQPIVDAQTRQIMGFEALMRWMRPDIGLVPPNQFIPMAED 363

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  + L+     +  + + A    +++ +N++ +   +++    M   +  +  
Sbjct: 364 NGLINLLGAWALKSACVQLKRFEEAAGRQ-LYVSVNVSPRQFRNDQFLGMMDEALKLSGL 422

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              ++ L  +E ++M +PE + +LL ++ + G+ + +DDFGT  S L YL   P   +K 
Sbjct: 423 EGHQLMLEITEGILMSDPEHAEVLLNKIAERGVRIAIDDFGTGYSSLIYLKRFPIAALKI 482

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + +     + K  AI   I+ +A ++    +A+ +  E  +  L+  GC  IQ  H  
Sbjct: 483 DRTFIKDLPASVKDAAICNVILNLAGSLNLQTVAEGVENEQQLAFLSTQGCSLIQGFHTG 542

Query: 942 SPLGFNSILKLLKER 956
            P   +S++ +L+  
Sbjct: 543 YPSLPDSLIDILEAE 557


>gi|86748936|ref|YP_485432.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86571964|gb|ABD06521.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 777

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/682 (19%), Positives = 269/682 (39%), Gaps = 34/682 (4%)

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
             G     I   +     ++        +  I     Y     G       +  +    L
Sbjct: 97  RLGAITHGISLGIWSLVVLLDTQDTGAHMLCITTVVAYTSAGVGRTFGRPKIFHLQV--L 154

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
           +    + + + +   +    +        + I  +       ++ A     +      + 
Sbjct: 155 LSCGPLIIALIMVGGIYYLALALLSTVFFIAIRQVTSSLQRIYLDAWIGREREAALAHQ- 213

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW--------LPYIHI 458
              A+      +  +             A ++ L      G             +  I  
Sbjct: 214 FDTALNNMPHGLCMFRADGRLAVMNNRFAEMMKLGGALAEGSPSATEIVATCVTVGAISA 273

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +      + +D+ +      +  E            +    +PM          + +  D
Sbjct: 274 SSGRLILSEIDNSLAGEIVTVGDE-------PAPRSLSWTFQPMPGG-----GTVVLVED 321

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVMVIDIDKYK 577
           ITE++ +   I+  A  D LT +PNR  F D +  IL L       R   ++ ID+D++K
Sbjct: 322 ITERRNAEARIVHLARYDELTTLPNRVQFRDEIERILSLEHGHGKTRLSALLFIDLDQFK 381

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND LG  +GD +L ++  R+ ++L+  D +AR  G+ F +   +  +    A  A  +
Sbjct: 382 QVNDTLGHPLGDRLLCAVADRLRDMLRPEDFVARFGGDEFVVFQQNVRSDEDAAVLARRI 441

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + ++    +    + + ASIG A  +   I +  +LKNA++A+Y AK  G      FR 
Sbjct: 442 VERLSDRYLIEHHVVEIGASIGIAMTSP-GIRADILLKNADMALYRAKADGRGTFCFFRE 500

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +      ++ DL  A+ N E  L Y P++ L    I   EAL++W+HP  G +S  
Sbjct: 501 EMAHTVEARRILELDLRKALANEEFELYYQPLVNLKTGRITTCEALLRWNHPVRGTVSPV 560

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           + + +AEE+ +I  +  ++L +   + + W  Q     + + +N +S+     ++   ++
Sbjct: 561 DIIPVAEEMGLIVDLGRWILRKACMECMMWPKQ-----VSVAVNFSSQQFHQRDILNEVR 615

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +  +    SR+++  +ES ++ N + +   L +L   G+ + LDDFGT  S LSYL  
Sbjct: 616 YALEVSGLPASRLEIEITESSLLRNTQFTHDALAQLHGEGVRIALDDFGTGYSSLSYLHT 675

Query: 876 IPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG-CD 933
            P   VK + S + G    R   +LR +  ++ ++  +++ + I     ++ ++  G   
Sbjct: 676 FPLQKVKIDRSFLEGIDSDRPLTLLRGVARLSADLGMSVVVEGIETNEQLELISADGTVT 735

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q    + P+    + KLL  
Sbjct: 736 EAQGYLFSRPVPAARVRKLLTA 757


>gi|88858424|ref|ZP_01133066.1| hypothetical protein PTD2_13579 [Pseudoalteromonas tunicata D2]
 gi|88820041|gb|EAR29854.1| hypothetical protein PTD2_13579 [Pseudoalteromonas tunicata D2]
          Length = 1264

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 131/555 (23%), Positives = 251/555 (45%), Gaps = 20/555 (3%)

Query: 411  VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
            +  + + VW  D     +      + + G     + G            D    + I   
Sbjct: 703  LNQTKEAVWIADHNLKIIEVNAVFSLLTGFKKLELIGKSARIYNQKGR-DLKLEQLIFRE 761

Query: 471  FVGYRRGRLQYEFRVRAADNQFHWMIIRIR-----PMSNSNGDILRYIGIANDITEQKKS 525
               +       +   +  + +  ++ + I         N    ++ YIG+  D T +K++
Sbjct: 762  LQTHN--FWSGQIWSQRKNGEDFYLDLTITKTEQKSFFNFKNKLM-YIGMFTDQTVKKRN 818

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             + +   A +D +TG+ NR  F++ L+  ++ S  D +    ++ +D+D + KIN+ LG 
Sbjct: 819  EKELQRLATRDPITGLANRTLFIEHLSKAINDSK-DAHPNFALLFLDLDNFHKINESLGH 877

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI----SENNSLKIADFAIAMRKSI 641
              GD++L  ++ RI + L     LARL G+ F I++     S      +   A  +   I
Sbjct: 878  TEGDNLLKLVSDRIAQNLDSSCTLARLGGDEFAILIPPYLYSSMTIFYLKRIADKLLTQI 937

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                 L   E++V++SIG A +  + + S  ++++A+ A+ +AK  G N  + +      
Sbjct: 938  NH-FTLNNIEVSVSSSIGIALFPDNGLDSESLMRSADSALNYAKRNGKNSFQFYDKRLKT 996

Query: 702  SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            ++   +  +  L  A+EN E  L Y P    +  +IVG EAL++W       +   EF+ 
Sbjct: 997  ANVQTLSKESALFHAIENQEFILYYQPKFNTLTNKIVGYEALVRWPQADGTVVGPGEFIP 1056

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            IAE+   I  +   ++++  +    W +Q  +    I IN+++       L E +   +S
Sbjct: 1057 IAEQNGAIIPLTKVLVQQAFKQTKIWYEQGKLEG-RIAINLSAVHFQQASLIEDLAHYLS 1115

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                S    +L  +ES +M +PE +   + +L+ +G S+ LDDFGT  S LSYL   P D
Sbjct: 1116 IFNISGRHFELEITESAMMQDPEFALNQMNKLKTLGFSIALDDFGTGHSSLSYLKKFPID 1175

Query: 880  TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            T+K + S +     +E+   I  +II +AK +  +++++ +        L  MGC+ +Q 
Sbjct: 1176 TLKIDRSFIIDITTSEQDRNITSTIIRLAKYLNISVVSEGVETYAQAYLLHVMGCNVVQG 1235

Query: 938  SHVASPLGFNSILKL 952
             + ++P+    I  L
Sbjct: 1236 YYFSAPVAVQEIENL 1250


>gi|316932665|ref|YP_004107647.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315600379|gb|ADU42914.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 776

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 136/675 (20%), Positives = 271/675 (40%), Gaps = 24/675 (3%)

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
             G     I   +     ++  S     +  +     Y     G + + R  +     +L
Sbjct: 96  RLGAVAHGISLGIWSLVVLLGTSDPAAHMLCVATVVAYTSAGVG-RTFGRPQIFHL-QVL 153

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
           +    +   M     +    +        + I  L       ++ A     +      + 
Sbjct: 154 LSCGPLIYAMLQVGGVYYIALALLSAVFFISIRHLTSSLQRIYLDAWIGREREAALANQ- 212

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI---RNWLPYIHINDRDN 463
              A+      +  +             A ++ L    + G           + I     
Sbjct: 213 FDTALNNMPHGLCMFRPDGRLAVMNRRFAEMMRLRDDLVKGSPTAIEIVSACVAIGAISA 272

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L   +      L  E      ++    +    +PM          + +  DITE++
Sbjct: 273 ANGRL--ILSEIENSLAGEIVTVGDESVPRSLCWTFQPMVGG-----GAVVLIEDITERR 325

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVMVIDIDKYKKINDV 582
                I+  A  D LT +PNR SF D +  IL+        R   ++ ID+D++K+IND 
Sbjct: 326 NVEARIVHLARYDELTALPNRVSFRDEIERILEAEHGRGKTRLSALLFIDLDQFKQINDT 385

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L S+  R+ ++L+  D++AR  G+ F +   +  ++   A  A  +   ++
Sbjct: 386 LGHPCGDRLLCSVAERLRDMLRPEDLVARFGGDEFVVFQQNIASNEDAAALARRIVDRLS 445

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               +    + + AS+G A  +     +  +LKNA++A+Y AK  G      FR    ++
Sbjct: 446 DRYLIDHHVVEIGASVGIAMTSP-GTKADILLKNADMALYRAKADGRGTYCFFREEMAQT 504

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 ++ DL  A+ N E  L Y P++ L   +I   EAL++W+HP  G +S  + + +
Sbjct: 505 VEARRILELDLRKALANEEFELYYQPLVNLKTGKITTCEALLRWNHPVRGTVSPIDIIPV 564

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE+ +I  +  ++L +   + + W +     P+ + IN + +     ++   ++  +  
Sbjct: 565 AEEMGLIVDLGRWILRKACMECMLWPE-----PVSVAINFSPQQFHQRDVLTEVRYALEV 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +     R+++  +ES ++ N + +   L +L   G+ ++LDDFGT  S LSYL   P   
Sbjct: 620 SGLPARRLEIEITESSLLRNTQWTHDALQQLHAEGVRISLDDFGTGYSSLSYLHSFPLQK 679

Query: 881 VKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG-CDYIQDS 938
           VK + S + G    R   +LR +  ++ ++  +++ + I     ++ ++  G     Q  
Sbjct: 680 VKIDRSFLEGIDSDRPLTLLRGVARLSTDLGMSVVVEGIETNEQLELISADGTVTEAQGY 739

Query: 939 HVASPLGFNSILKLL 953
             + P+    I +LL
Sbjct: 740 LFSRPVPAQRIRQLL 754


>gi|254448860|ref|ZP_05062316.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
 gi|198261550|gb|EDY85839.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
          Length = 721

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 149/601 (24%), Positives = 281/601 (46%), Gaps = 24/601 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           V+  +      I+ + A     Q     S   R   A   +   +W WDI  +  T + D
Sbjct: 110 VMSSMTPQELAIKSLFALRSLRQLQEGASSIRRMEQAYRIAHLGLWTWDIGSEAFTISRD 169

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            A +L  +  S+ G I + L  IH + R+     +   +     R   EF++  +     
Sbjct: 170 AARMLRTSVSSLKG-IDSLLSLIHRDQREKVSAAMTRTLDDGIAR-SVEFQLADSKTNER 227

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           +  + +    N+     +  G+  D+T++  S   I   A  D+LTG+PNR      L T
Sbjct: 228 YFYMWLEREINTLSGSAKLEGLLQDVTQRVMSEHKIHSLAHYDSLTGLPNRGYLQHHLET 287

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL---- 609
           ++  S   +  +  +MVID+D + ++N+ LG + GD+VL  L RR  + +   ++L    
Sbjct: 288 LITQSKKLE-TQLAMMVIDVDHFGRVNNALGYSAGDEVLTELARRFEKAMHNGELLPQAE 346

Query: 610 --------ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                    R   + F +++    ++ ++   A  +++  +  I L E E+ VT S+G +
Sbjct: 347 DSEEQLMLLRTDADEFTLLVSHLGSADRVGGIAERLQRLASERITLDECELNVTLSMGIS 406

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSE 719
            +     T+  + + A  A  HAK +G N+ +    S   S    +  + DL  A E  E
Sbjct: 407 VYPLDSETAEGLQECASAATRHAKEQGRNNYQYSMKSLNSSALKRLGLESDLYKAFEREE 466

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y P + L    I G+EAL++W HPK G +S S+F+ +AE+L +I  +  ++L    
Sbjct: 467 FVLYYQPKVSLKTHHIQGVEALVRWQHPKLGVVSPSDFVALAEDLGLIVELGEWVLREAC 526

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                WR+Q     + I +N++++   D+  L E +   +  +      ++L  +E+  +
Sbjct: 527 FQAQRWREQGR--ALKIAVNVSAQQFKDHTHLIEAVSGALRDSGLPGGFLELELTENTFI 584

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            + + +R  +  L+++G+S+ +DDFGT  S L YL   P DT+K + S ++  +      
Sbjct: 585 KDTDTNRQTVSALKQLGLSIAIDDFGTGYSSLGYLTRFPVDTLKIDKSFVSCVSGNAQNA 644

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++R+I+ +A +++  ++A+ I  E +   L  + C+Y Q  H + PL   S ++ L+  
Sbjct: 645 EVVRTIVQLAHSMKLKVVAEGIAAEAEAAFLKGLNCEYGQGYHYSPPLPAGSFMQWLERY 704

Query: 957 F 957
            
Sbjct: 705 Q 705


>gi|226307762|ref|YP_002767722.1| hypothetical protein RER_42750 [Rhodococcus erythropolis PR4]
 gi|226186879|dbj|BAH34983.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 786

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/766 (22%), Positives = 320/766 (41%), Gaps = 57/766 (7%)

Query: 223 AMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
            + W  L         LS +V L   +  ++R      ++ S I F   +L  +R     
Sbjct: 32  VLPWAFLIAAIA----LSTIVVLLPADTGMFRWVWPSVVAVSSIAFSLYWLGRSRLGVSE 87

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL--L 340
              T   +    ++        +       +   + ++  +  +    +  +   +    
Sbjct: 88  SQTTELVVLTTQVVVWGVLLACLALVLFPILDPGNELVLTSTLMGGIAVGVFPTLMFRGF 147

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
              WI +    +             ++   LV   + +  L   T++   L        +
Sbjct: 148 TLIWIGLVGLGLAGGFWTEPEPSRYVLIGVLV---IFVGSLYSGTLLLANLFERRLRAEL 204

Query: 401 FSDGER--QSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
            ++ ER    L +     G+ D +W+ D      T +   A  +GL +  + G  +   L
Sbjct: 205 VAEDERDLVELLLNDLEDGAQDWLWETDSRGIASTVSYRFAEQVGLPAAQIRGRTMHEIL 264

Query: 454 PYIHINDRDNFRTILDSFVGY-------RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             I  +  D  R  LD            R   +Q   R         W  +   P S  +
Sbjct: 265 IGIGASRTDAGRKSLDLLTANFQAGTAFRDLTMQVVVR-----GDTRWWSMSGHPASG-D 318

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G    + G+ +DIT      + IL  A  D+LTG+ NR SF  +L++ L      D  R 
Sbjct: 319 GADYGWRGVGSDITHSYHQRQNILRLAEVDSLTGLRNRYSFNSQLSSRL-----RDGRRV 373

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--- 623
            + ++D+D +K IND LG  VGDDVL  +  R+  +L+  +I  RL G+ F I       
Sbjct: 374 WLAILDLDNFKSINDRLGHHVGDDVLRDVASRLHSVLRSNEICGRLGGDEFAIAFDDSAF 433

Query: 624 -------ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
                    ++ ++ +    +  S   P +L+  +I + AS+G+ S      +  +++  
Sbjct: 434 DDSAFDDIASADEVEERFQTILDSFERPFSLVGNQIRIRASLGYGSMPDDADSLEDLVIV 493

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+LA+YHAK  G N + +F        + R     DL  A+ + E  LVY P +      
Sbjct: 494 ADLALYHAKESGRNQIRAFDATLRDRATGRARALLDLRRALIDEEFELVYQPQVSAATGV 553

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG EAL++W+HP  G +S  +F+ +AEE  +I  I   +L        +W +      I
Sbjct: 554 VVGFEALLRWNHPTSGLVSPGDFISVAEETGLIVPIGAGVLRAACTAATTWPE-----DI 608

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++   L  +   E ++  +++    PSR+++  +ES+V+ + +  R +L +L  +
Sbjct: 609 RVAVNVSQVQLRSSRYVESVRQTLNEVNLHPSRLEIEVTESLVIDDAD--RDVLVQLSAL 666

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----RIAILRSIIPMAKNIE 910
           GI++ +DDFGT  S ++ L  +P D +K + + +          R A+LR++I +AK++ 
Sbjct: 667 GIAIAMDDFGTGFSSVASLARLPLDRLKIDRAFVAPLDADPSNSRFAVLRAVIAIAKSLG 726

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +A+ +  E     +T  GCD IQ      P+    I   L ER
Sbjct: 727 LDTVAEGVETERQRAIVTECGCDVIQGYLEGMPIRAAEIPDYLNER 772


>gi|328950132|ref|YP_004367467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450456|gb|AEB11357.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinithermus hydrothermalis DSM 14884]
          Length = 661

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 139/685 (20%), Positives = 274/685 (40%), Gaps = 42/685 (6%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           W A+   +   G A  + LF +++  P     +A  +   ++     F      +G   A
Sbjct: 11  WTARAWGVVLGGAALYSALFYLTY--PFWGRGLAPFSALWVLAAGWSFGP----RGGIMA 64

Query: 338 VLLIPAW-ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
             +I  W + +F W      A    L   ++   L GG     +L+              
Sbjct: 65  GFMILPWHLALFSWVRDPGPAYPALLPATLLGVILGGGTGWARLLL-------------- 110

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPY 455
            +   +   R    +      V   D     +   P++A ILG     ++ G       +
Sbjct: 111 -ERARAAEARYQRLLYHLPVGVGVHDGA-RLLYANPELARILGAPTPKALVGRPLT--EF 166

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I    R   +  L++    R   +   +R+R  D       +  + +    G    Y  +
Sbjct: 167 IPEAYRPQMQRRLEALRSGRTAVVSATYRLRRLDGTLIPAEVSGQRV--PFGHTEAYQVV 224

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D++E+      +    ++D +TG+PNR         +L+ +     +   ++ ID++ 
Sbjct: 225 VRDLSEETALRTRLEHLTYRDAVTGLPNRNYLKLTARQVLEQAQRRGWVVAAIL-IDLNG 283

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +  IN+  G+ VGD VL ++   +   ++  D++A L  + F ++               
Sbjct: 284 FHSINEGFGVHVGDRVLRAVAEALQATVRAEDLVAHLGADEFLVLAQDCT-PETALRLVQ 342

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
               ++  P  +      VTA+ G A +         +L  A  A+  A+ +G       
Sbjct: 343 RYLTALEGPYTVDGHRAYVTATAGVALYPEHGTALDALLAAASAALREARGQGVPVRLHT 402

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                S   +R+ ++ +L  A+    L L Y PI  L    I G EAL++W HP+ G I 
Sbjct: 403 PAQGGSPAPERLELEIELRQAMAARALELHYQPIRNLRTGRIAGAEALVRWPHPERGWIP 462

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE  ++  ++ ++L R   ++          P +  +N++ + L D      
Sbjct: 463 PGAFIPLAEERGLMPELDRYVLRRALAEMAR-------VPGWCAVNLSPQTLHDPGFVPF 515

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  +  +   P R+ L  +E ++  +PER   +L  ++++G+ L +DDFGT  S L+YL
Sbjct: 516 IREALEVSRVPPGRLVLEITERML-ADPERILPVLQAIKELGVGLAVDDFGTGYSSLTYL 574

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K +     G   + +  A++  I+ +A+ +   +IA+ +     ++ L    
Sbjct: 575 RLFPLDHLKLDQRFTHGLTRSTQDTALVEGILDLARRLGIEVIAEGVETPEQLEWLKAHA 634

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CDY Q   +A P    ++  L +  
Sbjct: 635 CDYAQGYLIARPGPLEALDALARRE 659


>gi|254240071|ref|ZP_04933393.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193449|gb|EAZ57512.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 685

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 224/436 (51%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++   ++  A  DNLT +PNR    DRL   +  +  DD  R  V+ +D+D +K +
Sbjct: 250 TSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDR-RFAVLFMDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD +L+ +  RI   ++  D +ARL G+ F +++         A  A  + K
Sbjct: 309 NDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVK 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  +   E+ ++ASIG A +     T  E++ NA+ AMYHAK +G N    F   +
Sbjct: 368 RISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++   +++ +  DL  A+E  +L L Y P +   +  ++G+EAL++W+HP+ G I+  +F
Sbjct: 428 NANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+   R +  W D        I +N+++       L + ++  
Sbjct: 488 LPLAEKTGLIVQIGEWVLDEACRQMRLWLD-GGHADWNIAVNLSALQFAHAGLVDSVRNA 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS + L  +ES  M + + S ++L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +          AI+ +I+ + + +   I+A+ +  E   + LTR+GC+ +
Sbjct: 607 ASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +L 
Sbjct: 667 QGFLLGRPMPAEQLLA 682


>gi|15596924|ref|NP_250418.1| MucR [Pseudomonas aeruginosa PAO1]
 gi|254234825|ref|ZP_04928148.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|48474964|sp|Q9I310|Y1727_PSEAE RecName: Full=Uncharacterized signaling protein PA1727
 gi|9947703|gb|AAG05116.1|AE004599_1 MucR [Pseudomonas aeruginosa PAO1]
 gi|126166756|gb|EAZ52267.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 685

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 224/436 (51%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++   ++  A  DNLT +PNR    DRL   +  +  DD  R  V+ +D+D +K +
Sbjct: 250 TSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDR-RFAVLFMDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD +L+ +  RI   ++  D +ARL G+ F +++         A  A  + K
Sbjct: 309 NDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVK 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  +   E+ ++ASIG A +     T  E++ NA+ AMYHAK +G N    F   +
Sbjct: 368 RISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++   +++ +  DL  A+E  +L L Y P +   +  ++G+EAL++W+HP+ G I+  +F
Sbjct: 428 NANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+   R +  W D        I +N+++       L + ++  
Sbjct: 488 LPLAEKTGLIVQIGEWVLDEACRQMRLWLD-GGHADWNIAVNLSALQFAHAGLVDSVRNA 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS + L  +ES  M + + S ++L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +          AI+ +I+ + + +   I+A+ +  E   + LTR+GC+ +
Sbjct: 607 ASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +L 
Sbjct: 667 QGFLLGRPMPAEQLLA 682


>gi|300114821|ref|YP_003761396.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii
           C-113]
 gi|299540758|gb|ADJ29075.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii
           C-113]
          Length = 571

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 216/426 (50%), Gaps = 10/426 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PN     +RL   +  +         ++ +D+D+ K+IND  G   GD  L  
Sbjct: 146 YDTLTGLPNHTLLRNRLEQAMGATRQ-----LALLFLDLDRLKEINDSFGHEAGDRELTR 200

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + + + + L+  D   R+ G+ F II        K+   A  +  +IA P  +L  EI  
Sbjct: 201 VAKLLQDCLEPTDTALRIGGDEFAIIQTPALGVDKVTLLAQRLLDAIARPHQILGHEIHN 260

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           +ASIG   + S    + ++LKNA++AMYHAKH G N+ + +    ++    R+ + +DL 
Sbjct: 261 SASIGITLFPSDGNKAEQLLKNADIAMYHAKHEGQNNYQLYTPAINARAHPRMALAKDLQ 320

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A E+  LYL + P + L        EAL++W HP+ G ++   F+ +AEE  +I  I  
Sbjct: 321 SAFESGNLYLQFQPQLNLATGRTSSFEALLRWRHPQHGMLARQTFIRLAEETGLIIPIGA 380

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + +E   +  +SWR      P+ I +N++ +     +L   +  L+ KT  +PS +++  
Sbjct: 381 WAIETACQSCVSWRQLRPG-PLRIAVNLSPRQFRQPDLAGSIATLLEKTKLAPSALEVEI 439

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E +++ + + +   L  L  +G+ +++DDFGT  + LSYL  +PFD++K + S + G  
Sbjct: 440 TEGLLLEDMDSAFNTLQSLSALGVHISVDDFGTGHASLSYLKNLPFDSIKIDRSFIQGIP 499

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I +++I +  ++   ++A+ +     +  L +  CD IQ   ++ PL      
Sbjct: 500 TDPESRTITKAVIALGHSLNLKVVAEGVETPEQLLYLQKHHCDLIQGYFISKPLDMPEAQ 559

Query: 951 KLLKER 956
           +  +E+
Sbjct: 560 QWWEEK 565


>gi|94267458|ref|ZP_01290885.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93451999|gb|EAT02704.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 775

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 214/441 (48%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++++E +   A  D LTG+PNR+ F DRL      +A ++     V+ +D+D +K +N
Sbjct: 332 EVEQAMEQLRHQATHDLLTGLPNRELFQDRLRQATRRAAKEER-PVAVLQLDLDNFKAVN 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A GD+VL  + RR+ + L     + RLSG+ F I+L +     + A+ A  +  +
Sbjct: 391 NNFGHAAGDEVLRFIARRLQQALADDCTVGRLSGDEFVILLPNIKECRESAEMARQILAA 450

Query: 641 IAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           +  P++      ITV  S+G A +         +L++ E+AMY AK  G      +    
Sbjct: 451 LETPVSTPHTPNITVGGSVGIACFPDDGKDDKTLLRHVEMAMYQAKKAGRGTYAFYAREL 510

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +    D +++   L  A+  ++L L Y P + + D  I+G+EAL++W   + G +    F
Sbjct: 511 NQRHQDDLVLHHKLKTALAENQLELHYQPKVAMNDGRIIGVEALLRWHDKELGQVGPDRF 570

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  ++L    R + +W        + + +N++ +     +L   +  +
Sbjct: 571 IPMAEATGLIVPLGDWVLNTACRQLAAWYAAGRE--LKMAVNLSPQQFRQPDLVNRLANI 628

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++ T      ++L  +E+  M N   +   L  L  +G++L LDDFGT  S L+YL  +P
Sbjct: 629 LAATGAPAHLLELEITETAAMENFAATSRQLHNLSDLGLTLALDDFGTGHSSLAYLKSLP 688

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S ++  T  E    I+R+++ MA ++E   +A+ +  E  +  L +  C   
Sbjct: 689 ISQLKIDRSFISDLTFEENNRIIVRAVLSMAASMELETVAEGVESEEQLDFLRQHHCTSY 748

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A  L    +   L +R
Sbjct: 749 QGWLFARALPAGQLEAFLDQR 769


>gi|254503359|ref|ZP_05115510.1| hypothetical protein SADFL11_3398 [Labrenzia alexandrii DFL-11]
 gi|222439430|gb|EEE46109.1| hypothetical protein SADFL11_3398 [Labrenzia alexandrii DFL-11]
          Length = 777

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 230/468 (49%), Gaps = 10/468 (2%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           F+W  +R          I+R       I  E+ ++ + I   A  D LTG+PNR+ F  +
Sbjct: 303 FYWTDVRAPSEREE--KIVREAAHLASIAVERDRAEKRIRYLADHDPLTGLPNRRKFKRK 360

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   ++ ++        V+ +D+D +K IND  G AVGDDVL ++  RI           
Sbjct: 361 LEAKIE-ASRQTGEPVAVVFVDMDNFKFINDSYGHAVGDDVLSTVADRILGSHNITFETI 419

Query: 611 RLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           R  G+ F + +     +  ++ D+   MR  I   I L    + VT SIG A +     T
Sbjct: 420 RFGGDEFVLFVDGPTAHKSELKDYLARMRAEILKTIELDTLTLHVTCSIGTAVFPLDGDT 479

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727
           + E+LKNA+ AM+ AK+ G ++   F   +     +R+ + E+L   ++N+EL+L Y P 
Sbjct: 480 ADEVLKNADQAMFEAKNLGRDNFFIFDRETAPAGVNRLKLVEELRRGIDNNELFLEYQPQ 539

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           I LM   IVG EAL++W HP+ G +   EF+ IAE+   I ++  ++L    R   +W+D
Sbjct: 540 IDLMSGRIVGAEALVRWTHPERGRLMPGEFIEIAEQTGAIISLGRWVLNEACRQNKAWQD 599

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
               P I I +N+++    D  L   + + +  +      ++L F+ES+V+ N E++  L
Sbjct: 600 AGL-PHITIAVNVSANQFRDKALLSDVFSALDTSGLDARYLELEFTESLVIQNVEQAVAL 658

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPM 905
           +   R+IGI L +DDFGT  S L  L   P + +K + S +      E   AI+R+II +
Sbjct: 659 MEDFRRIGIHLAIDDFGTGYSSLVALKNFPLNRLKIDQSFIRDLEYKESDRAIVRAIISL 718

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            + +   ++A+ +        L    C+  Q  H   P+  +   KLL
Sbjct: 719 GRELGLNVVAEGVETAKQQAFLLSCRCETTQGYHFGRPMAADKFSKLL 766



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 65/179 (36%), Gaps = 14/179 (7%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHI 458
           +F D +     V    D V+  D     V     +A  +G + S  + G     L     
Sbjct: 45  MFGDLDWLQQLVNLVSDYVYVKDRRSRFVMANDKVAEDMGRSTSAELIGKSD--LELHPP 102

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                F     S +      +    R+   D    W      P+   NGD++  +GI+ D
Sbjct: 103 EVGQVFYEDEQSMMREGSDLVDVMDRIVLPDGTEKWFSSSKYPIRKENGDVVGIVGISRD 162

Query: 519 ITEQKKSLEGILCNAFQDNL----TGIPNRQSFLDRLTTI-LDLSATDDNLRPTVMVID 572
           +TE++ + +          L    +G+P      D L ++ L +    ++   +VM++D
Sbjct: 163 VTERQNAEKLQRGQNEI--LKKLVSGLP----LQDVLNSLVLMIEGQLESGMGSVMLVD 215


>gi|116694068|ref|YP_728279.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113528567|emb|CAJ94914.1| predicted signal transduction protein containinga membrane domain, an
            EAL and a GGDEF domain [Ralstonia eutropha H16]
          Length = 1085

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 219/459 (47%), Gaps = 8/459 (1%)

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             Y  I  D+TE+ +  E I   A  D LTG+PNR    +R    L L A     R  +++
Sbjct: 621  GYQAIGYDLTERLRVDEYIRHLALHDPLTGLPNRAELSER-AQALLLYARSHGERVALLL 679

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            +D+D +K IND LG  VGDDVL ++  R+   ++  D++AR+ G+ FG++L    +  + 
Sbjct: 680  LDLDHFKHINDSLGHPVGDDVLRTMADRLKGAVRQGDLVARMGGDEFGVVLGGLRHDSEA 739

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  ++  +   +    + + VT SIG A +     + +E+LK A+ A+Y AKH G  
Sbjct: 740  ELIAAKIQARVNEELQAGGQRLRVTPSIGMAIYPDDGDSLTELLKAADSAVYAAKHDGRA 799

Query: 691  HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +  F  +   +      I+  L  A+   E  L Y PI+      I G+EALI W+ P+
Sbjct: 800  QLCRFASAMAEASLARFTIEGLLRRALAGDEFRLRYQPIVDAATLAITGVEALITWNTPE 859

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G +  +EF+ IAE+  ++  +  + L    R+I + R       I + +NI+   L   
Sbjct: 860  RGAMQPAEFIPIAEQSGLVAPLGEWTLATACREIQALRQALGSE-IEVAVNISPLQLRQA 918

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
               + +   + +    P  + +  +E +++   E +     RLR++G+ L++DDFGT  S
Sbjct: 919  NFPDTVAHCLQQAGLPPQGLVIEVTEGILVDGGETTIETFRRLRELGVGLSIDDFGTGYS 978

Query: 869  LLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L+YL  +P   +K + S +          A+  +II +   +   +IA+ +      + 
Sbjct: 979  GLNYLTRLPISRLKIDKSFVDDVATPGHDQAVAAAIIALGHQLHLKVIAEGVETAAQFEF 1038

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKLLKE--RFPLVKNT 963
            L   GCD +Q    +  +    + ++L++  R P   + 
Sbjct: 1039 LRAQGCDGLQGFLFSQAVPQQVLREILEQGIRVPTPTSA 1077



 Score = 44.6 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 54/245 (22%), Gaps = 18/245 (7%)

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
           ++G +  +  A  A    +S +     A    ++                + G  +    
Sbjct: 231 RLGDLMRAVGAPAAAELELSLHEGSPAAPGPMLSGGPTEGERREDGSAALLHGERQFQYG 290

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS--Q 398
              W L          A   R     +    +  L+L  +                    
Sbjct: 291 GVTWTLRAATRPAFEAAHGPRQAYLALAAGTLATLLLAWLTHALARQGRAACQREAQAVH 350

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL----P 454
               D       +  S D     D     V  +     + G     + G   + L     
Sbjct: 351 AWEDDSAMLQACLAQSADGFILIDAQGVVVRASERAGQLFGADPQRLAGRSLDTLVPGAT 410

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +   D                  +  E     AD     +      +  ++G    ++ 
Sbjct: 411 GVVPGDAA------------PGSEVHRELAGVRADGSRFTLRASAARLPAADGGAAHWLW 458

Query: 515 IANDI 519
              D+
Sbjct: 459 AVTDL 463


>gi|54301909|ref|YP_131902.1| hypothetical protein PBPRB0229 [Photobacterium profundum SS9]
 gi|46915329|emb|CAG22102.1| hypothetical ScrC (sensory box/GGDEF familyprotein) (involved in
           swarmer cell regulation) [Photobacterium profundum SS9]
          Length = 782

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 213/450 (47%), Gaps = 9/450 (2%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  +I ++K S E +   A  D LTG+PNR+   +RL   L  +  + N    VM ID
Sbjct: 330 VRLTEEIDKRKISEEKLAYQASHDALTGLPNRKYGNERLEQELFRAKRN-NTNVLVMYID 388

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K+IND LG   GD  L   T R+   ++  D LARL G+ F +++    +      
Sbjct: 389 LDNFKQINDTLGHLAGDQFLKLSTSRLLGSVRHSDTLARLGGDEFLLVIPDLKDLKSAKL 448

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +      P    ++E  V+ SIG + +      + ++L +A+ AMY  K  G N  
Sbjct: 449 LATTIVSLFNKPFFWQKQEFFVSTSIGLSVFPQDGDNAQQLLASADTAMYRVKQDGRNAF 508

Query: 693 ESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +     R  +  ++ D  L  A+ N  L L Y PII L    IVG EAL++W+  K+G
Sbjct: 509 SFYNTDMNRDVQRTLELDGRLRQAITNDSLELYYQPIIELESNRIVGAEALMRWNDAKFG 568

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
            +S  EF+ +AE+  +I  +    + +       W+      P+ I IN +S      + 
Sbjct: 569 FVSPEEFIPLAEKNGLIHQLGELAINKACMQAAEWQKI---SPLQISINFSSVQFRYCDK 625

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +   ++++     ++ +  +ES+++ + +    LL +L+ +G  LT+DDFGT  S 
Sbjct: 626 LFKQICHGLTQSGLPADKLDIEVTESLLIDHSDEVVTLLNKLQSMGAQLTIDDFGTGYSS 685

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PF+ +K + + +           ++ +II MAK +   ++A+ I  +     L
Sbjct: 686 LSYLHKFPFNKLKIDRAFLRNMHANDADRELVNAIIAMAKALNLKVVAEGIEEQWSADYL 745

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             + C Y Q    + P+       LL  + 
Sbjct: 746 RFINCKYGQGYLYSKPVPAKEFELLLSHKL 775


>gi|319943588|ref|ZP_08017870.1| diguanylate cyclase/phosphodiesterase [Lautropia mirabilis ATCC
           51599]
 gi|319743403|gb|EFV95808.1| diguanylate cyclase/phosphodiesterase [Lautropia mirabilis ATCC
           51599]
          Length = 541

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/445 (28%), Positives = 223/445 (50%), Gaps = 14/445 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-------DNLRPTVMVIDIDKYK 577
           + E +   AF D LTG+PNR  F DRL   +     D       +  +  V+ +D+D +K
Sbjct: 74  ANEELRRRAFIDPLTGLPNRMLFEDRLLHAMQRYDRDDDSRARREPRKVAVLFVDLDGFK 133

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+LG AVGD+VL    RR+    +  D +AR+ G+ F ++    ++    A  A  +
Sbjct: 134 PINDMLGHAVGDEVLKEAARRLRTTTRDSDTVARIGGDEFVLLAEDVSDVADCASLANRV 193

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +A P+ +   ++T++ S+G A +         +++NA+ AMY AK  GGN    F  
Sbjct: 194 IQVLAQPLEVQGHQVTLSGSVGVALYPEHGDRLK-LVQNADAAMYTAKRAGGNTYALFES 252

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  D++ +++DL  A+E  EL L Y P I      + G+EAL++W HP  G +  +
Sbjct: 253 RMNEGLQDQLSLQQDLRHALERGELQLHYQPKIDARLGRLQGVEALLRWQHPTRGMVGPN 312

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  +  +++E   R +  W D+       + IN++   L   EL   ++
Sbjct: 313 VFIPIAERFGLINGLGNWVIEESCRQMRVWADEGLSMN--VAINLSVHQLRTEELVPRIE 370

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + +++    PS++    +ESV M + E ++     L +IG+ L++DDFGT  S LSYL  
Sbjct: 371 SALARYQVMPSQLLCEITESVAMEDIESTQRAFEALSRIGVYLSIDDFGTGYSSLSYLRQ 430

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +          AI+ ++I +A  +   ++A+ +  E     L  + CD
Sbjct: 431 LPARQLKIDRSFVADIEVRPDARAIVSAVIQLAHQLGLRVVAEGVETEGQRDILLVLQCD 490

Query: 934 YIQDSHVASPLGFNSILKLLKERFP 958
            +Q   +A P+   ++   L++  P
Sbjct: 491 ELQGYLLARPMAVEALDDWLQKLPP 515


>gi|269102818|ref|ZP_06155515.1| hypothetical protein VDA_002244 [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268162716|gb|EEZ41212.1| hypothetical protein VDA_002244 [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1021

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/566 (21%), Positives = 248/566 (43%), Gaps = 18/566 (3%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             S  +  S D +                       S  + G     L  +   +  +   
Sbjct: 463  LSQVIEQSDDGIVIISFDGIIEYVNKSFELAKNKRSYELVGTKAEVL--LEPYNIPDLEL 520

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                    R   +QY       ++   +   +I P+ N+NGDI  Y+ I  +ITEQ  + 
Sbjct: 521  EQLHKKIQRGETIQYIVDYFDNNHNTIYEHKKISPIKNNNGDITHYVSITRNITEQIIAE 580

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            E +   A  D+ T +PNR    +++   +            ++ ID+D +K +N+ LG+ 
Sbjct: 581  EKLKRLAHYDDKTSLPNRVHLTNKIANYI----QSSETPAILLDIDLDNFKTVNETLGME 636

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GD++L+ + +R+  +     I+AR+SG+ F + L +         F   + + I+ PI 
Sbjct: 637  CGDEILLVIAQRLQ-IFAQSGIIARVSGDEFVLFLTNLAVIPDFQRFCQQIHEYISQPIQ 695

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
            +  + +++  SIG A +     T+  ++K A +A+Y AK RG N    F +      + +
Sbjct: 696  IQHKSLSINISIGIARYPQDATTTDSLIKYANIALYEAKDRGRNRDCYFDIEMAERSTKQ 755

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            + ++  L  ++      L Y P +     ++VG EAL++W       +S ++ + I E  
Sbjct: 756  LQLEMQLRESLGTERYELFYQPKVDTRTHKLVGAEALLRWRDQYGKLVSPTDVIPILELS 815

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I  +   ++ +    +  W++Q     + + +N+++K L D+++ E  +  I  T   
Sbjct: 816  GLIIPVGEQLITQACMTLKRWQEQGLQ--LHLALNLSAKQLEDSDIVETFERSIILTGCD 873

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            PS +++  +ES++M + + +   L RL+ +GI + +DDFGT  S L+YL   P   +K +
Sbjct: 874  PSLLQVELTESILMTDVKLALDTLTRLQTLGIKIAIDDFGTGYSSLAYLHTFPIHILKVD 933

Query: 885  GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             S +         I I ++I+ +A ++   ++A+ +  +     L  +  D +Q  +   
Sbjct: 934  RSFVKDLPFCADSITISKAIVELAHSLNLQVVAEGVEDKHQAAFLNSINVDELQGFYFGK 993

Query: 943  PLGFNSIL-KLL----KERFPLVKNT 963
            P+         L    K   P  ++ 
Sbjct: 994  PMPIQDFETHFLPNNSKNHSPCSESA 1019


>gi|152967529|ref|YP_001363313.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362046|gb|ABS05049.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 731

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 137/600 (22%), Positives = 259/600 (43%), Gaps = 17/600 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +A+   +    ++     G  +   L+     +        +Q + S       A+  +G
Sbjct: 136 LAVWGTVAGSTLEVLASAGGAVWRALVATEEARRAAREATGAQLLLSG------ALRLAG 189

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
              W WD     V     +  +LGL        +  W   IH +DR  F  + D    + 
Sbjct: 190 LGSWSWDPATGVVRLDDRLRRMLGLCPTDPDPDLETWRSGIHPDDRGPFTGVEDPA-AHV 248

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                Y FRV +AD      +    P++ +        G+  D++  +KS   ++  A  
Sbjct: 249 GTSAPYPFRVTSADGTERTFLGMSVPLATT--SSSAVQGLVLDVSAGEKSTGELVRLAQC 306

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ NR     RL   L+ +         ++++D+D++K +ND LG  +GD +L  +
Sbjct: 307 DSLTGLANRSVMDLRLVEALETA--TPTDAVALVLLDLDRFKLVNDTLGHQIGDALLRQV 364

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ + +    +LARL G+ F +++   +    ++  A  + + +  P+ L        
Sbjct: 365 AVRLQDAVPPGAVLARLGGDEFVVMVPGVDRPEAVSIMARDLLRRLRAPMMLPGLPEPFV 424

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCL 713
            +           T+ ++ ++A++A+Y AK  G + V  +   +      R   +  +  
Sbjct: 425 CTSSAGIAVGHSGTADDLFRSADMALYRAKDGGRDRVALYDSAMRHEAQARRDAEHRVRR 484

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+    L +V+ PI+ L D EIV  EAL++ + P  G +   EF+  AE+  +I  ++ +
Sbjct: 485 ALRTDGLRVVWQPIVSLSDHEIVAAEALVRLEDPVEGLLEPKEFVDTAEDTGLIVDVDTW 544

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L  + R +  WR       + +  N++ K L        +   +  T  S S +    +
Sbjct: 545 VLGEVLRQLREWRRAG--VGLQVSFNVSGKTLEHPSFAHRLAHSVESTGASGSSLLAEVT 602

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
           E  ++     +R  LG LR IG  + LDDFGT  S LSYL   P   +K + S +   G+
Sbjct: 603 ERTLIDLSSSTRASLGELRSIGARVGLDDFGTGYSSLSYLDRFPLSFLKIDMSFVRPLGT 662

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +++  A++R++I +A      + A+ +  E+    L  MGCD  Q      P+   ++ +
Sbjct: 663 SDRAEAVVRALISLAHAHGMVVTAEGVETELQAAMLRDMGCDRAQGYLFGRPVVAAALPQ 722


>gi|304396821|ref|ZP_07378701.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
 gi|304355617|gb|EFM19984.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
          Length = 750

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 219/433 (50%), Gaps = 7/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  DNLT +PNR    DRL   ++ +   +     +M +D+D +K +ND  
Sbjct: 289 EANRELAQLALHDNLTRLPNRILLEDRLEQAINKANR-EQTLFALMFMDLDGFKAVNDAF 347

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV +T R+ + +     LARL G+ F  +L+  ++    A  A  + K++  
Sbjct: 348 GHHIGDSLLVGVTERMSQQMAGYYTLARLGGDEFV-LLVEIDDPNDAAAIADKLVKAVDR 406

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P ++   E+ V+ S+G A +        E++ NA+ AMYH K+ G N    F+  ++   
Sbjct: 407 PFDISRYELVVSLSLGIAVYPGDGEDERELMFNADAAMYHTKNNGRNGYTFFQPSMNIQA 466

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL  A++N+EL L Y P        ++G EAL++W+HPK G +S  +F+ +A
Sbjct: 467 QSQLQLNNDLWQALDNNELRLFYQPKYCAPRGPLLGFEALLRWEHPKRGLLSPDKFLPMA 526

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  MI  I  +++    R +  W  Q       + +N+++     + L E +   ++K 
Sbjct: 527 EKTGMIVNIGNWVINEACRQLRQWHLQ-GHTDWSVAVNLSALQFEQSNLVETVVDALAKH 585

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E+  M +P+ S  +L +L ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 586 QIPAELLTLEVTETTAMRDPDESVRILTQLTQLGVKASIDDFGTGYSSLLYLKRLPASEL 645

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +   I+ +I+ +A++++  ++A+ +        LT +GC+ +Q   
Sbjct: 646 KIDRAFVNELQHQPEDATIVSAIVALAQSLQLKVVAEGVETAEQQAFLTGLGCNTLQGFL 705

Query: 940 VASPLGFNSILKL 952
           +  P+    + +L
Sbjct: 706 LGRPVPAEQVPEL 718


>gi|297583782|ref|YP_003699562.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297142239|gb|ADH98996.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
          Length = 579

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/584 (20%), Positives = 239/584 (40%), Gaps = 26/584 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGER-----QSLAVLGSG--DIVWDWDIVRDRVTTTPDIAT 436
             V +HV+      Q    + E+      +  +  +G        D+  D +  +    +
Sbjct: 2   IQVAKHVMKKMDIDQLTARNKEKDLYTIMANMIETAGKESGFVITDLNYDVLYISEWAKS 61

Query: 437 ILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           +           +   +  +H    D   +  I+++          +E  +    +Q   
Sbjct: 62  LFC---KEEERSLFRCIDIVHMSEKDEAIYNRIINNCTSG-----TFEAVLLTRQSQPLN 113

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    M    G  +  +   +D+  Q  S+         D +TG+ NR  F   LT  
Sbjct: 114 IKVVCEEMRTDEGLPVCMMISLHDLYAQAVSVTQTPLLQPVDQMTGLKNRHQFEFDLTRS 173

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +     D      ++  D+D++K  N  LG   GD +L  +  ++  L      + R  G
Sbjct: 174 M---RNDQESPLALLFFDLDRFKFYNATLGQFTGDRLLKDIAVKLKSLENNRISVYRYGG 230

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F +++        I      ++     P  +   E+ +TAS+G + +  +  T  E++
Sbjct: 231 DQFAVVISDYGGMADINSMVDTVKGMFQQPFMIEHHELQMTASLGVSLFPETGGTLEELV 290

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             AE+AM+ +K +G      +          ++ +++ L  AVEN    L Y P   L  
Sbjct: 291 NQAEMAMHASKEKGSAKYNIYNKEIHLYYNNQLTLEKRLHKAVENRGFQLHYQPQYDLAH 350

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + ++G EALI+W     G +    F+  AEE  +I  I   +LE   R   SW D     
Sbjct: 351 DRVIGFEALIRWQDDHLGFVPPDRFIPTAEETGLIIPIGHIVLEEACRMGKSWLDHGLD- 409

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +NI+       +    ++  +++T     ++ +  +E+V++ N +     L +L+
Sbjct: 410 -LRVGVNISPVQFQHPDFIHSVRQTLAQTGLPAKQLDIEITENVLLYNRDECLNTLDQLK 468

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++G+ +++DDFGT  S LSYL   P D +K + S +    +     AI+ SII +A N+ 
Sbjct: 469 RLGVHISIDDFGTGFSSLSYLRTFPVDVLKIDQSFVRDVSNNHNDQAIVTSIIQLAHNMG 528

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +IA+ +  +  +  L    CD +Q    + P+    I   L 
Sbjct: 529 MKVIAEGVETDDSLHFLIDRECDQMQGYIYSKPIPPEQISSFLA 572


>gi|104782021|ref|YP_608519.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95111008|emb|CAK15728.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Pseudomonas entomophila L48]
          Length = 744

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 213/447 (47%), Gaps = 12/447 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +   A  D +TG+PNR  F  +LT  +       +    V+++DID +K++N
Sbjct: 306 ELRQYQAQLERLAHYDTITGLPNRVLFQQQLTEAILR-----DHGLAVLMLDIDGFKQVN 360

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L   T R  + L   D + RL G+ F  +L       ++     A+ + 
Sbjct: 361 DSLGHPMGDLLLQQATARFLQELHSQDRVCRLGGDEFVFMLQGAQG--QVQHQIRALLRC 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +  P +L      VT SIG A        +  +L++A+ AMY AK  G N    +     
Sbjct: 419 LQRPFDLNGNATLVTGSIGLAWSPQHGEDADSLLRHADTAMYAAKESGRNAWRPYHPDMT 478

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L  A+E++E  L Y P + L   ++ G+EAL++W  P  G +S +EF+
Sbjct: 479 ERLQQRLELERNLRRALEHNEFELWYQPKVDLFSGQLEGVEALLRWRDPHHGLVSPAEFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  +   +LE     + +WR   +  P  + IN+A+  +  ++    + + +
Sbjct: 539 PLAERTGLIIPLGERVLELACAQLAAWRA-GDGLPGPLAINVAALQIERSDYVTSLASAL 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +     + +++  +ES++M + +++  +L +L+ +G++  +DDFGT  S L+YL  +P 
Sbjct: 598 ERHGLPANLLEVEITESLLMESQQQACAVLAQLQAMGVATAVDDFGTGYSSLAYLRALPI 657

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +      +  +A+ R+II +   +   I A+ I  +     L   GCD  Q
Sbjct: 658 DHLKIDRAFIKDLPEDDDAVAVARAIIDLGHALGFRITAEGIETQAQFDFLRNAGCDQGQ 717

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
                 P+    + + L       +  
Sbjct: 718 GFLFGRPMPAADLARWLAANESRRRGA 744


>gi|26990293|ref|NP_745718.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24985245|gb|AAN69182.1|AE016552_4 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 695

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 212/443 (47%), Gaps = 7/443 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LT +PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 255 ANQELTQLALHDTLTDLPNRTLLADRIEQAIAKVAEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L ++  R+   L   D LAR+ G+ F  +L+         D A+     ++ P
Sbjct: 314 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELQEPNDAMDVAVKQVNLVSRP 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ ++AS+G   +  +     E+L+NA+ AMYHAK  G N    F   ++S   
Sbjct: 373 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL LA+E  +  L Y P       + +G EAL++W+HP+ G +    F+ +AE
Sbjct: 433 QQLQLLQDLRLALEQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQQGLLLPDRFIGLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W DQ +     + +N+++       L + +   + +  
Sbjct: 493 KTGLIIPIGEWVLTEACRQMRQWLDQGHH-GWRMAVNLSAIQFCHAGLVDSVARALQQNG 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  +     LTR+GCD +Q   +
Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDKQQDFLTRLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
             P+     +  L+   P +   
Sbjct: 672 GQPVPAEQFMSKLQAMGPELTAA 694


>gi|326794595|ref|YP_004312415.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
 gi|326545359|gb|ADZ90579.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinomonas mediterranea MMB-1]
          Length = 800

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 140/574 (24%), Positives = 259/574 (45%), Gaps = 40/574 (6%)

Query: 400 IFSDGERQSL----AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN---- 451
             +D ER +L     +  + D +   D       + P    + G  S  +     +    
Sbjct: 237 ALADVERSNLHTKAIIDHAADAILLLDEKGCITLSNPAAERLTGQTSEQLINTKVSSLYD 296

Query: 452 --WLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
             W+    I  +   +    ++++      R+  E R+   +                  
Sbjct: 297 DPWISMSEILADMHLDQSITIETYFISHGKRIPVEIRIAKYEIH---------------- 340

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            ++  + +  DITE+K + E I   AF D+LT +PNR  F++RL  +LD    +      
Sbjct: 341 RVVEIVLLVRDITERKSAEERINRLAFYDSLTRLPNRHFFVERLNELLDELRINRRQS-A 399

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +++ D+D++K IND LG  VGD++L  +   I  LL    + AR+ G+ F ++L   +  
Sbjct: 400 LIMFDLDRFKNINDSLGHNVGDELLCKVVGAITPLLPEKAMFARVGGDEFVVLLPEFSQE 459

Query: 628 L-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  + + +  +         + E ++ V+ASIG   +  S  TS+ +LK A+ A+Y
Sbjct: 460 AGEPNRSLVEISKDILSRCNAVKKVGEHDLHVSASIGICLFDGSNETSTSILKQADSALY 519

Query: 683 HAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N  E ++        + + ++  L LA+EN +  L Y P        ++G EA
Sbjct: 520 RAKEVGRNTYEFYKEDMQAISDEYLKMERALFLAMENEDFELYYQPQND-ASGRLIGAEA 578

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILIN 799
           LI+W+ P  G IS ++F+ IAEE+ +I  +  ++L +  RD+  WR +      + + +N
Sbjct: 579 LIRWNEPTQGFISPAKFIPIAEEIGLIVELGEWVLHQALRDVSQWRAEGIWDDSLQVSVN 638

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++          + +++ I      P  + L  +E++++ + E S  L+ ++R +G+SL+
Sbjct: 639 VSPMQFQHAGFMQMLKSAIETFNVPPHCLDLEITENMLLSDSESSLDLMYQVRSLGVSLS 698

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L YL  +P   +K + S +           I+ +II MAK +   ++A+ 
Sbjct: 699 IDDFGTGYSSLKYLKSLPISRLKIDQSFVRDLLSDHSDEVIVLTIIAMAKALNIDVLAEG 758

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  +     LT M C   Q  +   P   +   K
Sbjct: 759 VETQAHQNRLTDMNCTLYQGYYFGKPSPAHLFSK 792


>gi|326795281|ref|YP_004313101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Marinomonas mediterranea MMB-1]
 gi|326546045|gb|ADZ91265.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Marinomonas mediterranea MMB-1]
          Length = 1025

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 137/574 (23%), Positives = 261/574 (45%), Gaps = 14/574 (2%)

Query: 392  ATGYFSQGIF---SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                  Q +F       R++  +  S D +   D     V   P      G+    +   
Sbjct: 444  EIAERDQALFWFKESEMRKTAILNSSMDAIVTIDGQGTIVEFNPAAERTFGMLKKQVKAK 503

Query: 449  IRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNS 505
                L ++  + R      L       +G +   +  F +   + Q   + I I    N 
Sbjct: 504  NFISL-FVGKDKRVEMSQSLSLGFSNSQGLVLNRRNNFTLLRGETQPFPVEITITKAVND 562

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            +G    +     DIT   K  + +   A+ D LT + NR    ++L   + ++    +  
Sbjct: 563  HGQFQEFTLHIRDITRHIKLQQRLKFLAYSDPLTSLHNRTFMAEQLERSIKVANQAGDT- 621

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              ++ +D+DK+K IND LG   GD++L  +  R+  +    D++AR  G+ F I++  + 
Sbjct: 622  VALLFLDLDKFKLINDTLGHKAGDELLCEVASRLNSISHIDDVIARWGGDEFLIMVTDKV 681

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            +  +I D A  +  ++  P  L  + + V  S+G A       T+ ++++ A+ AMY AK
Sbjct: 682  SKPRIEDLANRILTAMKTPFLLEGKPVEVATSVGIALSEKD-ETAEKLIQRADSAMYAAK 740

Query: 686  HRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G   +  +   +S   +D  +++++L +A++  +  L Y PI      ++V  EALI+
Sbjct: 741  QSGRGVLRFYDEHMSLELNDAYLLEKELVVALDQRQFVLHYQPIYDASANQLVQFEALIR 800

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W+HP  GN+   +F+ IAEE  +I  I  ++++   + I S  +Q     + I IN++ +
Sbjct: 801  WNHPDKGNVPPIDFIPIAEESHLICLIGEYVIDESLKLIASLTEQDIDI-VPISINVSGR 859

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L+ +   E M+  +     +   +K+  +E V + + E    ++ RL+ +GI +++DDF
Sbjct: 860  HLMASGFIEYMEDKLKFYGINGRFVKVEVTEGVFLHDTELCADVMRRLKHLGIEISVDDF 919

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921
            GT  S L YL  +P DT+K + S +    +  +   I  SII +A+ +   +IA+ +   
Sbjct: 920  GTGYSSLYYLKSLPIDTLKIDKSFVKECHDLAEGHTICESIIRLAQGLALEVIAEGVETN 979

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + L   GC+  Q  +   P+     + +LKE
Sbjct: 980  EQAETLIEWGCNKHQGYYYCHPVDEEKAVSILKE 1013


>gi|312959205|ref|ZP_07773723.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with response regulator [Pseudomonas
           fluorescens WH6]
 gi|311286465|gb|EFQ65028.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with response regulator [Pseudomonas
           fluorescens WH6]
          Length = 624

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 239/490 (48%), Gaps = 14/490 (2%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D  +  ++     E R  A+   + W +        +    L+ IG+ + I E+ + L  
Sbjct: 135 DQLLILKKPFDHLEIRQMASALTWKWQL--------AQDVALKVIGLEHTIEERVQELLK 186

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +      D LT +PN     DRLT  + +    D  +  VM I +D++K+IN+ LG  VG
Sbjct: 187 VSHLLQYDTLTELPNSTLLGDRLTQAIAIGRRHD-TQLAVMFIGLDRFKRINNALGYPVG 245

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  ++  +   ++  D + R   + F I+L    +  +    A  + ++I+   ++ 
Sbjct: 246 DELLQQVSLSLVAAVRSSDSVFRYGSDEFVILLNDVQHPQQSQHIAHKLLRAISATRHVA 305

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
             +++VTAS+G + + +    + E++K+AE AM+ +K RG +    +          +  
Sbjct: 306 GHDLSVTASLGISIYPNDSANAVELIKHAETAMHTSKERGPDDFSFYTEDMNLRAQHQQN 365

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  +  A+E  E  L Y P + L+   IVG EALI+W  P+ G +S  +F+ +AE+  +
Sbjct: 366 LESAIRQALERDEFVLHYQPKLDLISGRIVGAEALIRWFQPRSGWVSPVDFIPVAEDSGL 425

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++L +      +WR    +P + +  NI++ D    E    +  ++ +T   P+
Sbjct: 426 IVPLTQWVLRQACEQAQAWR-VMGLPELRMSANISAIDFRQREFVGNLATILKETGLPPT 484

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ESV+M N + +  LL +++ +G+ L LDDFGT  S LSYL   P D +K + S
Sbjct: 485 LLELEITESVLMQNVDETVELLHKIKAMGVRLALDDFGTGYSSLSYLRRFPIDVLKIDQS 544

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         ++ ++I M K++E  IIA+ +     ++ L    C+  Q    +  +
Sbjct: 545 FVRGLNVNNQDAQLISAMIGMGKSLELNIIAEGVETIEQLEFLKAQECEEGQGFLFSKAV 604

Query: 945 GFNSILKLLK 954
                 +LL+
Sbjct: 605 PAKDFAQLLQ 614


>gi|331694322|ref|YP_004330561.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949011|gb|AEA22708.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia dioxanivorans CB1190]
          Length = 734

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 245/558 (43%), Gaps = 15/558 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D   ++L + G    +    +  D +   P +  +LG  +            ++H +D +
Sbjct: 178 DLHYRALYLRG-RVGIAVGSLSGDVIDVNPALYRLLG--ADVRPELPHAAADFVHPDDVE 234

Query: 463 NFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            F                + + R+   D    W  +    + N  G+  R + +  D++E
Sbjct: 235 TFVEAYHRVASDSGPDSAEIDVRLVRPDRLVVWARLSTTLVRNDRGEPDRILAVVQDVSE 294

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +    +   A QD LT +PNR     +L       A     R  +  +D+D ++ +ND
Sbjct: 295 RHRLRSRLELAATQDRLTRLPNRAFAEQQLRQAFSPGAAR---RVGLCAVDVDGFRAVND 351

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG AVGD +L ++  R+        ++ R  G+ F ++++       +   A  +  + 
Sbjct: 352 SLGHAVGDRLLSAVAGRLQMAAGDH-LVTRTGGDDFAVLVVDTAGPDDVKVLADRLLDAF 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  L ER +TVTASIG +   ++     E+++ A++A+  A+ +GG    ++      
Sbjct: 411 GPPFQLGERSLTVTASIGVSEAPTATTVPEELMRAADVALSWARAQGGGRRVAYDPERDA 470

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +     +   L  AVE  E  L + P++RL    + G EAL++W HP  G +    F+ 
Sbjct: 471 GEAARFTLLAGLPEAVERGEFRLAFQPLVRLASGRLCGTEALVRWQHPVEGLLGPGRFIE 530

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE    I A+  ++L    R   +W  +      ++ +N++   L+      G++ +++
Sbjct: 531 LAERSGAIVALGDWVLGEACRQAAAWYAELGEQSPYVSVNVSPVQLVAPGWLAGVRKMLA 590

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++     +++L  +E  V+G+   +  +LG LR  G+ L LDDFGT  S L++L  +P  
Sbjct: 591 ESGLPAEKLQLEITEQAVLGDEAVALDVLGALRSEGVRLALDDFGTGWSSLAWLRRLPVH 650

Query: 880 TVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            +K +GS + G           +I+R+++ +A  +   + A+ +   +  + L R+GCD 
Sbjct: 651 ALKIDGSFIDGLRHPDPDPMDESIVRALVELAHALGLEVTAEWVETRVQAERLERLGCDL 710

Query: 935 IQDSHVASPLGFNSILKL 952
            Q            +  L
Sbjct: 711 GQGRWFGDAGPAAWVPDL 728


>gi|126175435|ref|YP_001051584.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125998640|gb|ABN62715.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 684

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 118/430 (27%), Positives = 211/430 (49%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKR-SFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +   +     ++RL G+ F I+  + +   + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERFVGDKGTVSRLGGDEFVILADTVHTPDQAADFVDKLLIQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +++  EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKVIACEALIRWQ-KDGRLISPVSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + +  W+ + N   I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCKVLREWQKKYNY-AIPIAINVASQQFADASLVPDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G S+ +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAIAKLEQLKSAGFSIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++       AI  +I+ + K +  TI+A+ I  E  +  L    C   Q  + +
Sbjct: 597 KIDRCFVSDL-PGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKENQCQVGQGFYFS 655

Query: 942 SPLGFNSILK 951
            PL       
Sbjct: 656 QPLPQAEFEA 665


>gi|332185061|ref|ZP_08386810.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332014785|gb|EGI56841.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 778

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 149/761 (19%), Positives = 296/761 (38%), Gaps = 40/761 (5%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           + NR        A+    L   S  F  +         +  +W      A+  + I    
Sbjct: 42  IENRRRSWTAIAALT-AGLSIWSTHFLAMLAYRGRFPIDFDLWLTMVSAAVPVAGIWAAL 100

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI-VLYYTYFIIYH 329
            +    +    V          +A +  +     +V A I    +A    L      +  
Sbjct: 101 TFDRHRQTRPVVIVTGLILSFSVAAMHFVGMNALIVQARIHYDGIAIAQALAIGTLFLTL 160

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA---LVGGLVLIVILIGFTV 386
            +  + R        + + +  +G+       + +  + P    +     LI   I    
Sbjct: 161 SICTHRRLGGWARIIVPVALGALGIVTLHFGAMGSTTLIPGGVEVGASSHLIERHIVSRA 220

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLG----SGDIVWDWDIVRDRVTTTPDIATILGLAS 442
           +   +A    +    +  +R    + G    + + +         +   P +AT+LG  +
Sbjct: 221 VIIAMALIVLTMIAAAVIDRLLTDLRGLTGATREGIAIL-KNGRIIEANPRLATLLGTTT 279

Query: 443 GSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +      +WL     +D      I D     R                    +     
Sbjct: 280 AQLIRSRPEDWLE---ASDGAPLMLIPDRPAEAR------------PHGVTDCCLEIATH 324

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
                G     +    D+TE++++   I   A  D LT +PNR  F   L T +  +  D
Sbjct: 325 EIEYRGR-RAIVLAIRDLTEERRAQRQIAFMAVHDPLTRLPNRAYFSQALETAITQA--D 381

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ +D+D++K +ND+ G A GD +L  +   + + +    ++AR+ G+ F I+ 
Sbjct: 382 QKGPFALLALDLDRFKAVNDLFGHAAGDSILCRVASILTDAVDEASVVARVGGDEFLILQ 441

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              + + K+      +  S A  ++L    + V  SIG + +      +  + +NA++A+
Sbjct: 442 RGIDGAEKVQRLTETILSSFAAEMDLSRDPMAVGVSIGVSLFPKDAADADTLRQNADVAL 501

Query: 682 YHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G      F     +   +R  ++ DL  A+   ++ LVY P++      I+G E
Sbjct: 502 YRAKMSGRGTASFFDHELDQTVRNRRALEHDLRHALLRDQMRLVYQPLVATGGAAIIGYE 561

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP+ G +   +F+ IAE+  +I  +  ++L    R   SW       P+ + +N
Sbjct: 562 ALLRWEHPERGEVVPDDFVPIAEDTGIILQLGEWVLREACRTAASWPA-----PMTLAVN 616

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++        L E +   +  +  +  R++L  +E+V++ N E +   L  L+ IG+ + 
Sbjct: 617 VSPIQFQIPNLPEIVSRALIDSGLAAGRLELEITENVLLHNRESTLKTLHALKAIGVGIV 676

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LS L   PFD +K + S ++G    E   +I+R+I+ + +++   ++A+ 
Sbjct: 677 MDDFGTGYSSLSNLRCFPFDKIKIDRSFISGVTDDEAARSIVRAIVGLGRSLNLPVVAEG 736

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASP--LGFNSILKLLKER 956
           +      + +   GC   Q      P      +    L+ R
Sbjct: 737 VETVEQHRMVLEEGCPQAQGFLFGCPGEGPVYAAPSALRRR 777


>gi|148547411|ref|YP_001267513.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148511469|gb|ABQ78329.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 695

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 212/443 (47%), Gaps = 7/443 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LT +PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 255 ANQELTQLALHDTLTDLPNRTLLADRIEQAIAKVAEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L ++  R+   L   D LAR+ G+ F  +L+         D A+     ++ P
Sbjct: 314 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELQEPNDAMDVAVKQVNLVSRP 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ ++AS+G   +  +     E+L+NA+ AMYHAK  G N    F   ++S   
Sbjct: 373 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL LA+E  +  L Y P       + +G EAL++W+HP+ G +    F+ +AE
Sbjct: 433 QQLQLLQDLRLALEQRQFRLHYQPKFDAQVCQPIGAEALLRWEHPQQGLLLPDRFIGLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W DQ +     + +N+++       L + +   + +  
Sbjct: 493 KTGLIIPIGEWVLTEACRQMRQWLDQGHH-GWRMAVNLSAIQFCHAGLVDSVARALQQNG 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  +     LTR+GCD +Q   +
Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDKQQDFLTRLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
             P+     +  L+   P +   
Sbjct: 672 GQPVPAEQFMSKLQAMGPELTAA 694


>gi|254470566|ref|ZP_05083970.1| hypothetical protein PJE062_5112 [Pseudovibrio sp. JE062]
 gi|211960877|gb|EEA96073.1| hypothetical protein PJE062_5112 [Pseudovibrio sp. JE062]
          Length = 698

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 238/502 (47%), Gaps = 10/502 (1%)

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R +F  +LD      +  L     +  +     W  +  R   +        +  A+D+T
Sbjct: 191 RRDFDALLDELRKTGKANLVA---LMHSSQGERWFDLNARSGYDPFSGSRAILLSASDVT 247

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++ K+   +   A  D LTG+ NR          LD +    N    ++ ID+D++K IN
Sbjct: 248 KRLKAEHEVRYLAHHDTLTGLANRTFLEIEAERYLDETRITGN-PGALIFIDLDRFKTIN 306

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGDD+LV + +R+ E+++    +ARL G+ F +++ +  +   + D +  +R +
Sbjct: 307 DTLGHLVGDDLLVVIAKRLKEVVEGIGFVARLGGDEFVVLIANFADYDLLDDISREIRTA 366

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++ P  +    + VT SIG  ++    +    +++ A+LAMY AK  G + +  F   +S
Sbjct: 367 LSKPCKVRGHMLQVTPSIGVCTYPEHGVDLDTLMRKADLAMYKAKDLGRDRICFFDISMS 426

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +RV ++  L  A+ N EL + Y P + +    IVG E L++W HP  G +S++ F+
Sbjct: 427 REAEERVSLETALRQALRNKELAVHYQPRVCVATNRIVGAEGLLRWHHPTRGLVSAASFI 486

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  MI  I  ++          W    +   I I IN++        + + +  ++
Sbjct: 487 EIAEEAGMIDEIGDWVAREAMLQQKQWAQAGHD--IAISINLSPAQFRRGRISQRLHRIL 544

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T  S   I+L  +ES ++ +   +   L  LR +G +L +DDFGT  S L YL   P 
Sbjct: 545 IETGASARSIRLEITESALLSDANETLKELNALRDLGFTLEIDDFGTGYSNLGYLQRYPV 604

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
             +K + S +  +  KR  I++ I+ M + +  T++A+ I  +  ++++ ++ C   Q  
Sbjct: 605 TALKIDRSFIADT--KRWPIVQMIVQMGRLLNLTLVAEGIETKEQLRQIQKLQCHEFQGY 662

Query: 939 HVASPLGFNSILKLLKERFPLV 960
             +  +   +   LL  +  + 
Sbjct: 663 LYSPAVAPETFECLLNGQQTIA 684


>gi|207742363|ref|YP_002258755.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206593753|emb|CAQ60680.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 701

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 210/436 (48%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   K+ + +   A  D+LT + NR    DRL   +  +  +      +M +D+D +K +
Sbjct: 250 TSLAKANKELAYLALHDSLTKLSNRLLLEDRLEQAIRSAGRNRG-SFALMFLDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G   GD +L  + RRI   ++  D +AR+ G+ F  +L S          A A+  
Sbjct: 309 NDVYGHHAGDLLLADVARRIVACVRLQDTVARVGGDEFV-VLASVGEPADAGTLADALLA 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P  +    + V+ SIG A +     +  ++L NA+ AMYHAK  G +    F  S 
Sbjct: 368 AAREPFLVDGHALRVSTSIGIALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASM 427

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++ + +DL  A+E  EL L Y P     D  +VG+EAL++W HP  G +    F
Sbjct: 428 NANVHKQLQLVQDLRQALERRELVLHYQPKFSAPDGPVVGVEALVRWQHPSRGLVPPDAF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  ++L+   R +  WR +       I +N+++       L + ++  
Sbjct: 488 IPLAEKTGLIVPLGAWVLDEACRQMAQWRRE-GRTSWSIAVNLSAVQFAHAALVDTVRDT 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LARHALEPPCLTLEITESTAMRDADASLRILQQLHAMGVRISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +       +  AI+ +++ + + +   I+A+ +  E     LTR+GC  +
Sbjct: 607 ASELKIDRGFVRDLAHDTEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHAL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q + +  P+   ++ +
Sbjct: 667 QGNLLGRPMTAQALAE 682


>gi|302879537|ref|YP_003848101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s)
            [Gallionella capsiferriformans ES-2]
 gi|302582326|gb|ADL56337.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s)
            [Gallionella capsiferriformans ES-2]
          Length = 1157

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/599 (22%), Positives = 265/599 (44%), Gaps = 19/599 (3%)

Query: 367  IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
                L+     ++I+    V+ ++  +   +  +       + A   + + ++  D    
Sbjct: 560  WLFLLLAATGSMLIIAVSVVVIYLRDSLRAAADLRVS----ATAFD-AQEGMFVTDAEGV 614

Query: 427  RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                      + G ++  + G     L     +    F  ++   +    G+   E   R
Sbjct: 615  IQRVNNAFTQLTGYSASEVIGQTPRLLSSGQHD--AVFYALMWQSI-NETGKWAGEIWNR 671

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              + + +   + I  + + +G +  Y+   NDI++ K +   I   AF D LTG+P  + 
Sbjct: 672  RKNGEIYPEYLAITAVKDESGVVNNYVATFNDISDSKAATNEIQLLAFYDALTGLP-NRR 730

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             L         S+   N    +++ID+D +K +N+ +G  +GD +L  +  R+   ++  
Sbjct: 731  LLLDRLLQALASSVRSNRMGALLLIDLDNFKTLNETMGHDIGDLLLRQVAERLTACVRNG 790

Query: 607  DILARLSGNRFGIILISE-----NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            D +ARL G+ F ++L        ++       A  +  S+ +P  L + E   T SIG  
Sbjct: 791  DTVARLGGDEFIVMLEEIGAQTVDSVTHTTTIAEKILNSLNLPYRLEKHECHSTPSIGAT 850

Query: 662  SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
             ++ ++ ++ E++K  ++AMY AK  G N +  F      +      ++ DL +A+ NSE
Sbjct: 851  LFSGTQQSADELMKQVDIAMYQAKQAGRNGLRFFDSKMQDAISARASLEADLRVALINSE 910

Query: 720  LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
              L Y   +       +G E LI+W HP+ G +S ++F+ +AEE  +I  +  ++L+   
Sbjct: 911  FQLHYQIQVN-SLGAALGAEVLIRWMHPQRGMVSPAQFIPLAEESGLILPVGEWVLKTAC 969

Query: 780  RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
              +  W+D A    + + +N++SK     E  E ++  +  +  +PS +KL  +ES+++ 
Sbjct: 970  HQLKVWQDNALTRELTLAVNVSSKQFRQAEFVELVKKTLQSSGANPSLLKLELTESLLLE 1029

Query: 840  NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
            N +     +  L+ +GI  ++DDFGT  S L Y+  +P D +K + S +          A
Sbjct: 1030 NIDEIIAKMNELKLMGIHFSIDDFGTGYSSLQYIKRLPLDQLKIDQSFVRDIMDDNNDAA 1089

Query: 898  ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I+++II M+  +   +IA+ +        L   GC   Q    + P+       LL  +
Sbjct: 1090 IVQTIIAMSDALGLNVIAEGVETREQRAFLDSHGCHTFQGYLFSKPIPLEQFEILLATK 1148


>gi|238759841|ref|ZP_04620997.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia aldovae ATCC 35236]
 gi|238701902|gb|EEP94463.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia aldovae ATCC 35236]
          Length = 662

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 116/550 (21%), Positives = 244/550 (44%), Gaps = 12/550 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                G     + G     L ++   +  + R  
Sbjct: 113 EQVVSEANSVIVILDKDGFVQRFNRLSEEYTGKKEQDVIGKNVYDL-FMTPKEAASSRKN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F        + E  V     +  ++       S S  +    I    DIT+++++ E
Sbjct: 172 IERFFQQ-GASYEVERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   
Sbjct: 231 RLRILANTDMITGLPNRHAIHERINSAI---QTRSDTSVGIIYLDLDNFKKVNDHYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   L   ++LARL G+ F +++ +     ++   A  +   + +P  +
Sbjct: 288 GDRLLKDVSLAILSCLDDNEMLARLGGDEFIVLVENAT-LSRLEATAQRILTRMKLPFRI 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
              E+    SIG A       T   ++++A+ AMY AK  G      F     +   + +
Sbjct: 347 GLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQEMNKKVSEYI 406

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L   +E  +L + Y P I     ++  +EAL++W  P+ G I+  +F+  AEE  
Sbjct: 407 WLDTNLRKGLEQHQLKVFYQPKISNKSGKVHSVEALVRWHSPERGLIAPGKFISYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L+   +  + W+++     + + +N++++ L+D  +       +  +    
Sbjct: 467 LIGPLGKWVLQTAMQQAVDWKERGIN--LRVAVNVSARQLIDEAIVTSFIESLEISKLES 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S + +  +ES ++ +   +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + 
Sbjct: 525 SLVDVELTESCLIEDESAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          +++R+II +A+ ++  +IA+ +  + + + L  +G D  Q    A P
Sbjct: 585 SFVRDIDNNPISQSLVRAIIVVAEALKMRVIAEGVETKGEEQFLDSIGVDEKQGFFYAKP 644

Query: 944 LGFNSILKLL 953
           +  + +   L
Sbjct: 645 MPADELEHWL 654


>gi|322831258|ref|YP_004211285.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
 gi|321166459|gb|ADW72158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
          Length = 672

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/555 (22%), Positives = 239/555 (43%), Gaps = 14/555 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                GL    + G     L         + R  
Sbjct: 113 EQVVSEANSVIVIIDQEGKIHRFNRLSEEYTGLREEDVIGRSAYDLFMSMEEGLAS-RQN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F  +++   + E  +     Q  ++       S S       I   +DIT+++K+ E
Sbjct: 172 INGFFQHQQ-SYEVERWINTVKGQRLFLFRNKFVHSGSGKQQKYLICSGSDITDERKAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG  NR +  + L   L     +      ++ +D+D +KK+ND  G   
Sbjct: 231 RLRVLANTDLVTGFANRNALQESLARALIERGEN---NVGLIYLDLDNFKKVNDAYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L +++  I + L   D LARL G+ F IIL +      +   +  + + +++P  +
Sbjct: 288 GDHLLRAVSDAIQDCLSPNDKLARLGGDEF-IILSTNAEIKALEALSQRVLRRLSLPFRI 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
              E+    S G A           +L+NA+ AMY AK +G N    F        S+ +
Sbjct: 347 GLIEVYTGCSAGIAICPEHGTDGDILLQNADTAMYAAKEKGKNVHCVFSPEMNEKASEYM 406

Query: 706 MIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +   L  A  E  +L L Y P + L    +  +EAL++W+ P+ G I    F+  AEE 
Sbjct: 407 WLDTHLRKALSEKDQLVLHYQPKVSL-YGTVQSVEALLRWNSPERGLIQPQSFIPYAEES 465

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++E   R    W+ +     + + +N++ + L ++     +   +      
Sbjct: 466 GLITPVGKWVIETATRQATEWQKKGLN--LRVAVNLSGRQLNNSSFITTLSDAMKNAGMK 523

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +    +ES ++ +   +  ++ +L K+G  + LDDFGT  S LS L  IP D +K +
Sbjct: 524 GCLLDFELTESCLVEDEGAAITMINQLHKLGAQVHLDDFGTGYSSLSQLARIPLDCIKLD 583

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S + G  +     A++R+I+ +AK ++ T++A+ +    + K +  +G D  Q    A 
Sbjct: 584 QSFIRGINDNPVSQALVRAIVAVAKTLQLTVVAEGVETAEEEKLIDEIGVDSKQGFLYAK 643

Query: 943 PLGFNSILKLLKERF 957
           P+  N +   L+E+ 
Sbjct: 644 PMPANELEHWLEEKM 658


>gi|21108215|gb|AAM36856.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 983

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 134/617 (21%), Positives = 251/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 366 FELEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 423

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 424 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 481

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  DIT ++++ E 
Sbjct: 482 LRISDGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDITREREANER 539

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +         +++ID+D +K IND  G A G
Sbjct: 540 IELLAHYDRLTGLPNRFLLREQAENAIREANERGQT-LAMLLIDLDGFKSINDSFGHATG 598

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 599 DNLLKLASARLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 658

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 659 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTYHYYSQDVLLRAQRRLE 718

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A++  E  LVY P++  +D+    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 719 LEHALQGALDREEFTLVYQPLVNTVDDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 778

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 779 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPS 837

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 838 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 897

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 898 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 957

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 958 SPRDMAQWLREADAGIR 974



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 163 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPEDHAHVS 222

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+  QK 
Sbjct: 223 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHQKL 282

Query: 525 SLEGILCN 532
             + +   
Sbjct: 283 LEQQLRDQ 290



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD   D +  + D    LG+    + G IR+ L  
Sbjct: 283 LEQQLRDQQAQLEEAQRIASMGSWSWDSHHDALWVSQDFLQQLGMTHVRLQG-IRDILRL 341

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 342 LAGPSVAQLRSAWRK-IKHEGMPVHFELEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG 400

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 401 QLQNVTEQRQTDALIRWR------TELLNR 424


>gi|317048285|ref|YP_004115933.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316949902|gb|ADU69377.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 661

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/553 (22%), Positives = 247/553 (44%), Gaps = 13/553 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D   +            GL    + G     L       + + R I
Sbjct: 114 EQVVSEANSVIVILDQRGNIQRFNRLSEEYTGLKEHEVIGRNVFQLFMTKQEAQASRRNI 173

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              F        + E  ++    Q  ++       S S  + +  I    DITE++++ E
Sbjct: 174 AGFFRDGN--SYEVERWIKTKKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQE 231

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +   +++  L+ +      +  V+ +D+D +KK+ND  G   
Sbjct: 232 RLRVLANTDTVTGLPNRNAIHQQISLALETAK---GAQTGVVYLDLDNFKKVNDAYGHMF 288

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L +++  I   L     LARL G+ F  +L    +   +   A  + + +  P  +
Sbjct: 289 GDQLLQAVSLAILSCLGKDQTLARLGGDEFV-VLAENTSQAALEAMASRILERLRQPFRI 347

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705
              E+    S+G A           +++NA+ AMYHAK  G      F   ++    + +
Sbjct: 348 GLIEVYSGCSLGIALAPLHGEDRESLIRNADTAMYHAKENGRGKFCVFASEMNQRVFEYL 407

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L  A++   L + Y P I   D E+   EAL++W+ P+ G +   +F+  AEE  
Sbjct: 408 WLDTNLRKALDQDHLVVYYQPKID-RDGEVRSAEALVRWNSPERGLVPPGDFIAYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  +++  + + II+WR       + + +N+++K L+D  +   ++  + ++  + 
Sbjct: 467 LIVPLGRWVMLNVLQQIIAWRQAG--IWLRVAVNVSAKQLIDQSIYSDLKQALIESGMTD 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +ES ++ N   +  L+ + +++G  + LDDFGT  S LS L  +P D +K + 
Sbjct: 525 CPIDIELTESCLIENEAGALKLMKQFQELGAQVHLDDFGTGYSSLSQLARVPIDAIKLDQ 584

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          +++R+I+ +AK +E  +IA+ I  + + K +   G D  Q  + A P
Sbjct: 585 SFIRNINKQPVAQSLVRAIMAVAKALELQVIAEGIETKAEEKFVMANGVDGRQGYYYAKP 644

Query: 944 LGFNSILKLLKER 956
           +  + +   L + 
Sbjct: 645 MPADQLGHWLAKH 657


>gi|54307823|ref|YP_128843.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum SS9]
 gi|46912246|emb|CAG19041.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum SS9]
          Length = 679

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 138/571 (24%), Positives = 249/571 (43%), Gaps = 33/571 (5%)

Query: 397 SQGIFSDGERQSLAVLGS------GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            Q + +  E     +         G  + + DI    ++     A +LG           
Sbjct: 120 RQILVNSLEELEHQLNQLNELISDGMCIVEADI---IISANQVAANLLGFDDSKELLGEE 176

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN---- 506
                I  + +      L                 R           R   ++ S+    
Sbjct: 177 LGRLLIDSHSQRILGETLSQMPSGDP---------RKCHTSPRCCTERPLLVTTSDITLM 227

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G   + +    D  E       +      D LTG+ NR  F  RL +++      +    
Sbjct: 228 GSPAKLV-KLQDAAEHMMQQGQVEQLVHTDPLTGLYNRHGFSRRLESLI-----TNETPL 281

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +DID +K IND LG  +GD VL  +++R+  LL    I+  L G+ FGI+L    +
Sbjct: 282 VMLYLDIDNFKNINDSLGHHIGDRVLQEISQRLRRLLPENAIIGHLGGDEFGIVLSEPEH 341

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +   I  P +L      +  SIG  S+  +   +  +L+NA+ AMY AK+
Sbjct: 342 DRAGDLVAQQVISLINQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADTAMYEAKN 401

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG N +  F   ++     R+ ++ +L   ++N+ L + Y P +   D  I G EAL++W
Sbjct: 402 RGRNRLVKFNEAMNKEARMRLWLEIELQKVLQNNGLEVWYQPKVNARDFAIDGAEALVRW 461

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G IS ++F+ +AE   +I+ + L ++  +   +  W+ Q  +    + IN++ + 
Sbjct: 462 KHPIEGYISPAQFIPVAENSGLIEQLGLVVMREVFTTVRRWKQQGILSG-RVAINLSPQQ 520

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             +  L + ++ L+  T  + + I    +ES VM + E +  +L  ++K+G +L++DDFG
Sbjct: 521 FGNPNLIDFVKKLLKSTGVNATDITFELTESAVMSDGEHTIQMLNAIKKLGFALSIDDFG 580

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P D +K + + +       K++ ++ +II + K +  +I+A+ +    
Sbjct: 581 TGYSSLSYLARFPLDELKIDRAFINDIDTVPKQVTLIENIINLGKALNMSIVAEGVETRQ 640

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               L+ + CDYIQ  H   PL  N +  +L
Sbjct: 641 QATLLSNLNCDYIQGFHFYRPLPKNELEAIL 671



 Score = 41.5 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L    S  +    D   + +        I GL    + G        +      + R   
Sbjct: 12  LLTDNSPFLFAVLDPQHNYLVVNNRYCEISGLQRDDLVGRND--KDILGQAFYRSLRPFY 69

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +         ++ E  V         M   + P+ N  G++   +  + D +E++  +  
Sbjct: 70  ERAFQGE--SVEGEV-VLDDSRHETSMHFSLSPLRNKTGNVSHIVLHSVDTSERQILVNS 126

Query: 529 ILCN 532
           +   
Sbjct: 127 LEEL 130


>gi|300716926|ref|YP_003741729.1| RNase II stability modulator [Erwinia billingiae Eb661]
 gi|299062762|emb|CAX59882.1| RNase II stability modulator [Erwinia billingiae Eb661]
          Length = 660

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 129/624 (20%), Positives = 265/624 (42%), Gaps = 21/624 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
            +         +     + + +     + G  L + L+G  V Q   A    + G  S  
Sbjct: 43  AVALTGPQASLIRSMTVITSSVNLTLSLYGEPLSMHLVGRRVNQTSWAGSASAWGDTSAV 102

Query: 405 ER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            R            V  +  ++   D   +            GL    + G    +  ++
Sbjct: 103 ARDLVLGLSFAEQVVSEANSVIVIVDQRGNIQRFNRLSEEYTGLKEQEVIGRN-VFQLFM 161

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  + R  +  F        + E  ++    Q  ++       S S  + +  I   
Sbjct: 162 TKQEASSSRRNISGFFR-DGSSYEVERWIKTKKGQRLFLFRNKFVHSGSGKNEIYLICSG 220

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++++ E +   A  D +TG+PNR +    +   L+           ++ +D+D +
Sbjct: 221 TDITEERRAQERLRVLANTDTITGLPNRNAINHAIAEALEQRVEQQ---IGIVYLDLDNF 277

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L +++  I   L     LARL G+ F I+L +  +   +   A  
Sbjct: 278 KKVNDAYGHMFGDQLLQAVSLAILSCLDKDQTLARLGGDEF-IVLATAASQASLEAMASR 336

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   +  P  +   E+    SIG A           +++NA+ AMY AK  G      F 
Sbjct: 337 ILDRLKQPFRIGLIEVYSGCSIGIAVSPQHGEDKESLMRNADTAMYTAKENGRGKFCIFS 396

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    + + +  +L  A++ ++L + Y P +   + E+  +EAL++W  P+ G +  
Sbjct: 397 AEMNQRVFEYLWLDTNLRKALDQNQLIIHYQPKVDG-NGEVKSVEALVRWLSPERGLVPP 455

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+  AEE  +I  +  +++      ++ WR++     + + +N++++ L D  +   +
Sbjct: 456 GDFISYAEESGLIVPLGRWVMLTALEQVVRWREKGID--LRVAVNVSARQLTDQSIYTDL 513

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  + +   S   I +  +ES ++ N E++  L+ + +++G  + LDDFGT  S LS L 
Sbjct: 514 KLALEQLNLSRCPIDIELTESCLIENEEKALALMLQFQQLGAEVHLDDFGTGYSSLSQLA 573

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +    ++    +++++I+ +AK ++  +IA+ I  + +   +   G 
Sbjct: 574 RVPIDAIKLDQSFVRNVNDQPVSQSLVKAIVAVAKALDLQVIAEGIETKEEEAFVLASGV 633

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q    A P+  + I   L  R
Sbjct: 634 DTRQGYLYARPMPADDIEHWLANR 657


>gi|163800146|ref|ZP_02194047.1| hypothetical protein 1103602000595_AND4_05684 [Vibrio sp. AND4]
 gi|159175589|gb|EDP60383.1| hypothetical protein AND4_05684 [Vibrio sp. AND4]
          Length = 775

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 211/444 (47%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           ++I  +K S   +   A  D LTG+PNR    +RL   L  +    N    VM ID+D +
Sbjct: 332 SEIERRKSSEMELAYQAKHDVLTGLPNRVYGSERLDLELSRAHRM-NSNVLVMFIDLDYF 390

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND +G  VGD++L     R+   ++  D+LAR+ G+ F +++   ++      FA  
Sbjct: 391 KQINDSMGHLVGDEILKIAAERLNSTVRHTDLLARIGGDEFLLVMPEFHDIDSAKRFAAK 450

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P      E  ++AS+G + +      + ++L  A++AMY  K  G N    + 
Sbjct: 451 VLSVFTEPFVWRNHEFFLSASVGMSVFPKDGDNAEQLLACADMAMYRVKQDGRNAFCFYD 510

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +     + ++  L  A+ +  L L Y PII L    IVG EAL++W+  K+G ++ 
Sbjct: 511 HNMNQNLQRFLELESRLRHAISHDLLELHYQPIIELNTGAIVGAEALMRWNDEKFGFVNP 570

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813
            EF+ IAE+  +I  +  F + +       W+      P+ + +N +S        L   
Sbjct: 571 EEFISIAEKNGLIHQLGDFAIRQACHQAAQWQAI---VPLLVSVNFSSVQFRYCERLFAQ 627

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + ++  SP    +  +ES++         +L +LR +G  LT+DDFG   S LSYL
Sbjct: 628 IEQHLEESGLSPELFDVEVTESLLFNQDSDLMEMLDKLRALGAKLTIDDFGIGYSALSYL 687

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +      E    ++  II MAK +   I+A+ I  +  +  LT + 
Sbjct: 688 QKFPFDRLKIDRSFLRNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLTNLN 747

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C++ Q  + + PL       LL +
Sbjct: 748 CEFGQGFYYSRPLPAKEFEVLLTK 771


>gi|116251057|ref|YP_766895.1| sensory box GGDEF/EAL domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255705|emb|CAK06786.1| putative sensory box GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 765

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 134/440 (30%), Positives = 234/440 (53%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  + I   A  D+LTG+PNR    +RL +ILD +  ++  + TV  ID+D +K IN
Sbjct: 326 ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLASILDQARRNNR-KVTVAYIDLDNFKDIN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D  G A GD+VL     R+   ++  D++ RL G+ F ++L+ +++    I      ++K
Sbjct: 385 DGRGHAAGDEVLKETAARMANSVRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRDLQK 444

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  PI     EITVT+SIG A++     TS E+L NA+ AMY AK  G N ++      
Sbjct: 445 AINRPIRGANGEITVTSSIGVAAFPFDGATSEELLANADRAMYRAKELGRNTLQHHDGGG 504

Query: 700 FRSDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + +++ L  A+   +L+L Y P + +    I GLEAL++W+HP  G +    F+
Sbjct: 505 TPVGMPLGEQEELHQAITGHQLFLQYQPQVDVATGRITGLEALVRWNHPAKGRVPPVNFI 564

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L++L    R    W++     P+ I +N+++K   D +    +   +
Sbjct: 565 PLAEETGLIVPLGLWVLNEACRQARHWQEMGLA-PLTIAVNVSAKQFADPDFATHVAEAL 623

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +ESVVM N ER+  ++  LR +G+ L++DDFG+  S L+ L   PF
Sbjct: 624 ERHRLQSRWLELEVTESVVMQNAERALAMMETLRGLGVRLSIDDFGSGYSSLAALKTFPF 683

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+      +   AI  ++I +A+ ++ +++A+ +  +  +  L +  C+  Q
Sbjct: 684 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRQAHCEEAQ 743

Query: 937 DSHVASPLGFNSILKLLKER 956
               + P+    I  LL+ R
Sbjct: 744 GFRFSKPVSPEEIPALLRAR 763



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 9/172 (5%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
                 AL      IV      +           + +     R    V    D ++  D 
Sbjct: 8   RWESTDALTAETRRIVAATEAMMASTAHHLSEGIENL-----RLKAIVHELPDFLYVKDR 62

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               V      A+ LGL    +    R++              I    +     R+  E 
Sbjct: 63  DSRFVFANAVTASSLGLERADLITGKRDF-DLFDFETARRHFDIEQQIMATGEARIDMEE 121

Query: 484 RVRAADNQFHWMII--RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                      +       P+ N  G+I+  IG++ DITE+K+  +     A
Sbjct: 122 SYVLP-GSRRPICRLTSKIPLRNDRGEIVGLIGVSRDITERKRQEDLHRGQA 172


>gi|254501927|ref|ZP_05114078.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437998|gb|EEE44677.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 759

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 224/452 (49%), Gaps = 12/452 (2%)

Query: 509 ILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           ++        +T++    E   +  +  D L+G+PNR  F   LT +L  + +       
Sbjct: 293 VIAVTAFTRHMTKRLAVSEAQAVHTSRHDALSGLPNRAHFHRLLTDMLQDTNSRGR-ETA 351

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K IND LG + GD V+V++ +R+  +L    I+AR+SG+ F +++ +  + 
Sbjct: 352 VIYIDLDHFKDINDTLGHSAGDMVIVAVGKRLTHVLGDNGIVARISGDEFAMVIPNSKSD 411

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      ++  I+ PI +  RE+  + SIG +      I   E+L+ A++A+Y AK  
Sbjct: 412 EWLEYILDQIQDEISQPIKIGARELHASLSIGASVAPRDGIDPDELLRKADIALYDAKEN 471

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F  +     +    +  +L +A++N EL L Y P      + IV +EAL +W 
Sbjct: 472 GRNRRSFFEANMEDHVQSKDKLSRELRMALKNDELTLAYQPQSDTAAQRIVSVEALARWT 531

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 +S ++F+ +AEE  +I  + L++L +       W      P + + +N++    
Sbjct: 532 KEDGTVVSPAQFIPVAEETGLINELGLWVLNKACAKAHDW------PDVVMSVNVSPNQF 585

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                 E + A+++    +P R+++  +ESV  G  +     L RL+ +GI + LDDFG+
Sbjct: 586 KHPRFVEKVMAILATNNLAPQRLEIEVTESVFAGRNDTVLKSLRRLKNLGIKVALDDFGS 645

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PFDT+K +   ++      +  AI+ SII + K +  TI+A+ I     
Sbjct: 646 GYSSLSYLRRFPFDTLKVDRDFLSDMDGNPEAEAIIVSIIQLGKALGMTIVAEGIETIEQ 705

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I+ L   GC  +Q   ++ PL    + K L++
Sbjct: 706 IRFLQAHGCHRMQGYFISQPLNETDLAKFLED 737


>gi|222147769|ref|YP_002548726.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221734757|gb|ACM35720.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 1051

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 152/590 (25%), Positives = 265/590 (44%), Gaps = 34/590 (5%)

Query: 389  HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +       Q + S   R  LA+   G  VW+ D           +  +  + + S H  
Sbjct: 460  ALDELSIREQQLESLSYRFELALDSYGCGVWEHDFSTGHTVWDERMCYLYNIPATSSHIT 519

Query: 449  IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               WL  IH +D +       + V     RL    RV        W+    +   + NG 
Sbjct: 520  DALWLSKIHKDDHEMLMEAARNAVKQHT-RLNTSQRVLLDQGGTRWVRSVGQVHVDRNGR 578

Query: 509  ILRYIGIANDIT---------------------EQKKSLEGILCNAFQDNLTGIPNRQSF 547
              + IGI+ D+T                     E + +   I  NA  D LTG+ NR+  
Sbjct: 579  -KKLIGISFDVTADVLLTEELRTAKAEAEARNIELELTKNRIEFNALHDPLTGLANRRKL 637

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
               L + L   +  +  R T++ +D+D++K+IND LG A GD +LV+  R +   +   D
Sbjct: 638  DIALDS-LTRQSQANRSRFTILHLDLDRFKEINDTLGHAAGDAMLVNAARVLSRHMNSGD 696

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            ++AR+ G+ F ++L    ++   A+ A  + + I +P++          SIG A     +
Sbjct: 697  LVARIGGDEFVVLLHGPIDAKAAAELAERIIQDINIPVDFEGFICRCGVSIGIAEAKGLR 756

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYH 725
              + ++L NA+LA+Y AK +G N  + F  +   +      I ++L  A+EN E+   Y 
Sbjct: 757  TDARKILINADLALYEAKRQGRNCFQFFTDNLQANIVSSKRIADELLHALENDEITAWYQ 816

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P       E+VG EAL++W HP  G + S+ F+ +AE+L ++  I+  +LE   +D + W
Sbjct: 817  PQFCANSMELVGAEALVRWQHPTRGILPSNSFLKVAEDLNVMARIDQIVLELALKDKMRW 876

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   P  I +N++S+ L D  L E +++L      SP  I     ES+ +   E   
Sbjct: 877  AAMGVKLP-KISVNVSSRRLHDAGLIETLESL----SISPGEISFELVESIFLDESEDIA 931

Query: 846  LL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
               + R++ +GI + +DDFGT  + +  L  +    +K +  L+     + +  A++RSI
Sbjct: 932  TTNIERIKALGIDIEIDDFGTGHTSIISLLKLQPKRLKIDRQLVMPLLNSSRERAMVRSI 991

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            I +A+++    +A+ +      + L  +GCD +Q    A PL F    + 
Sbjct: 992  IDIARSLGVATVAEGVESTAHAQILRELGCDLLQGYAFAKPLPFEEFGRF 1041



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 11/174 (6%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI-----QHVLATGYFSQGIFSDGERQS 408
                  +  ++ +   +   L     L G  ++     +   A         +   R  
Sbjct: 267 AGWQQKPQDHSNFVMTLVAVDLAFAAPLCGIAMLFISRAKRRRALQQMEDKYRALTRRFE 326

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTI 467
           LA+  S   +W+       +      A + G  + G +   +  WL  +H  DR   +  
Sbjct: 327 LAMDSSNIGMWELATGNPTLHQDSRAAQLHGSGSGGDLDQDMTRWLETVHPEDRAKAKAH 386

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + +           ++RV         +       ++++G   R  G+  DIT 
Sbjct: 387 VMACQQGEN---SQDYRVVLESGVIRTLRSVGS-HADASGH-NRVTGLVWDITA 435


>gi|307689130|ref|ZP_07631576.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium cellulovorans 743B]
          Length = 585

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 129/554 (23%), Positives = 255/554 (46%), Gaps = 17/554 (3%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L +      +   D   +          +       + G        I  +D   F    
Sbjct: 36  LIINNIKIGIAVLDESDNVKLVNDIYCEMYEKDIDELIGKTFEHGKKILNDDY--FYAGR 93

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                    +++   ++  +D +    I+    + +S       + +  D+++ K+ +  
Sbjct: 94  LGIAETGNVKVE---KIVKSDGRIFNAIVN-EVIIDSKEKGQHKVVLVTDLSQIKRFVSK 149

Query: 529 ILC------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +         +   N+TG+PNRQ   +R+  IL      ++    ++++DI ++KK+ND+
Sbjct: 150 MRSSVDEVAISKYSNVTGLPNRQYIENRIE-ILSYDNFSEDETFALVIVDIRRFKKVNDI 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L  +  RI + +    I+A L  + FG++L +     ++      +  ++ 
Sbjct: 209 YGARFGDELLKQVANRIQDYIDESAIIAHLGEDHFGVLLENIKKRQEVEMIVDRINDALT 268

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              ++   E+T+  S+G + +        ++L NAE A+  AK +G   V   +  S + 
Sbjct: 269 KNFSIAGEELTINCSMGISIFEEVMGNKKDLLTNAEKALIEAKDKGLEKVIYTKELSAKV 328

Query: 703 DRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +R   ++ DL  A+E  + +LVY P + L   ++VG+EALI+W HPK G IS  EF+ I 
Sbjct: 329 NRRTILENDLMTAIEKGQFFLVYQPQVSLNTGKMVGVEALIRWSHPKLGLISPFEFIPIV 388

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I +I  +++         WRD+   P   + +NI+S  L    +C+ ++ ++ + 
Sbjct: 389 EESGLIDSIGEWVIRTSCIQAKEWRDKKL-PFFKVAVNISSIQLKKMNICKIIKDILKEL 447

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ +++  +ES +M + E +      L  +GI + +DDFGT  S L+YL     D +
Sbjct: 448 SLDPNVLEVELTESAMMEDIELAIENFRELNNMGIKIAIDDFGTGYSSLNYLRKFSIDKL 507

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T   +      I ++II MAKN+   +IA+ +  +  +K L   GCD +Q  +
Sbjct: 508 KIDRSFVTELGDDFESTIITKTIIDMAKNLSFKVIAEGVETKEHLKYLMENGCDEVQGYY 567

Query: 940 VASPLGFNSILKLL 953
            + P+    + + +
Sbjct: 568 FSKPITAEEVEEFV 581


>gi|260220339|emb|CBA27777.1| hypothetical protein Csp_A03980 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 633

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 152/646 (23%), Positives = 276/646 (42%), Gaps = 42/646 (6%)

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
           ++    +++    G      L   W ++    +G  + +  +  N         G+VL V
Sbjct: 19  VFQFALLVFIAFSGTAAQYGLQSRWDVVLSLGLGAALMLPCQWLNHRGHHEAAAGMVLSV 78

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
             +    I         S  +        + ++G+G ++               +  +LG
Sbjct: 79  ATLSLFSIMWFSDGLRDSSLLG-----YPVILIGAGQLL-------KPRHFWMLLTFMLG 126

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                  G +  W   I                G    RL     +   +    W +   
Sbjct: 127 CVVMLGLGTLNGWRTGI--------------TSGTELDRLTDSVSILLINGFLIWFLT-- 170

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLS 558
               +    ++R          +  + E  L   A  D LT +PNR    + LT  + ++
Sbjct: 171 ---YDMQNALVRLRAQI----ARFHASEKNLTYLAQHDGLTRLPNRILGNELLTEAMRVA 223

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A + NL   ++ +D+D +K +ND LG + GDD LV + +R+ E ++  DI+ R  G+ F 
Sbjct: 224 AEEKNL-VAMLFVDLDNFKDVNDSLGHSAGDDFLVQVAQRLRESVRQSDIVCRQGGDEFL 282

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I L    +   +A  +  + + +  P  L   E+  + SIG A +     +  E++++A+
Sbjct: 283 IGLTGLQHPDAVAKVSQDILQKMQAPFQLRGIEVLASCSIGIALYPQHGNSFDELMRHAD 342

Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAMYHAK  G N    F        ++ + +   L  AV   E  L Y P+  L    ++
Sbjct: 343 LAMYHAKEAGRNTFRFFSEDIRSSVTESLHLISSLRQAVTQEEFVLHYQPVYDLHSGRLL 402

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W +PK G +S   F+ +AE+  +I  I  ++L    R + +WR Q     +F+
Sbjct: 403 GAEALVRWQNPKLGMVSPGLFITLAEKSGLIVDIGQWVLTEACRQMQAWRQQ-GATDLFV 461

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++        +   +   + +T   P +++L  +ES ++ + E+    LGR++  GI
Sbjct: 462 SVNLSPVQFSRGNVEAVIAQALRETGLDPRQLELEVTESTLIHDTEKFITTLGRIQHSGI 521

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            +++DDFGT  S LSYL   P   +K + S +      +K +A++ +II +AK+++ T+ 
Sbjct: 522 RMSIDDFGTGYSNLSYLQRFPVHKLKIDQSFVRRLMQGQKDVAMVSAIIHLAKSLQLTVT 581

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           A+ +  E   + LTRMGCD  Q    A P+           R  L 
Sbjct: 582 AEGVENEATREALTRMGCDQAQGYLFARPMPAKDFEAYWLARPTLT 627


>gi|302875698|ref|YP_003844331.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium cellulovorans 743B]
 gi|302578555|gb|ADL52567.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium cellulovorans 743B]
          Length = 584

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 129/554 (23%), Positives = 255/554 (46%), Gaps = 17/554 (3%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L +      +   D   +          +       + G        I  +D   F    
Sbjct: 35  LIINNIKIGIAVLDESDNVKLVNDIYCEMYEKDIDELIGKTFEHGKKILNDDY--FYAGR 92

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                    +++   ++  +D +    I+    + +S       + +  D+++ K+ +  
Sbjct: 93  LGIAETGNVKVE---KIVKSDGRIFNAIVN-EVIIDSKEKGQHKVVLVTDLSQIKRFVSK 148

Query: 529 ILC------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +         +   N+TG+PNRQ   +R+  IL      ++    ++++DI ++KK+ND+
Sbjct: 149 MRSSVDEVAISKYSNVTGLPNRQYIENRIE-ILSYDNFSEDETFALVIVDIRRFKKVNDI 207

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L  +  RI + +    I+A L  + FG++L +     ++      +  ++ 
Sbjct: 208 YGARFGDELLKQVANRIQDYIDESAIIAHLGEDHFGVLLENIKKRQEVEMIVDRINDALT 267

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              ++   E+T+  S+G + +        ++L NAE A+  AK +G   V   +  S + 
Sbjct: 268 KNFSIAGEELTINCSMGISIFEEVMGNKKDLLTNAEKALIEAKDKGLEKVIYTKELSAKV 327

Query: 703 DRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +R   ++ DL  A+E  + +LVY P + L   ++VG+EALI+W HPK G IS  EF+ I 
Sbjct: 328 NRRTILENDLMTAIEKGQFFLVYQPQVSLNTGKMVGVEALIRWSHPKLGLISPFEFIPIV 387

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I +I  +++         WRD+   P   + +NI+S  L    +C+ ++ ++ + 
Sbjct: 388 EESGLIDSIGEWVIRTSCIQAKEWRDKKL-PFFKVAVNISSIQLKKMNICKIIKDILKEL 446

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ +++  +ES +M + E +      L  +GI + +DDFGT  S L+YL     D +
Sbjct: 447 SLDPNVLEVELTESAMMEDIELAIENFRELNNMGIKIAIDDFGTGYSSLNYLRKFSIDKL 506

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T   +      I ++II MAKN+   +IA+ +  +  +K L   GCD +Q  +
Sbjct: 507 KIDRSFVTELGDDFESTIITKTIIDMAKNLSFKVIAEGVETKEHLKYLMENGCDEVQGYY 566

Query: 940 VASPLGFNSILKLL 953
            + P+    + + +
Sbjct: 567 FSKPITAEEVEEFV 580


>gi|329902982|ref|ZP_08273326.1| EAL domain [Oxalobacteraceae bacterium IMCC9480]
 gi|327548534|gb|EGF33198.1| EAL domain [Oxalobacteraceae bacterium IMCC9480]
          Length = 675

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 244/464 (52%), Gaps = 20/464 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E++++ E ++ +A  D LT + NR+ FLDRL      +      +  V+ +D+D++K 
Sbjct: 213 VVERERTREKLMHDALHDPLTRLGNRKLFLDRLQQAQLRARRVPGYQFCVLFVDLDRFKG 272

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF---------------PDILARLSGNRFGIILIS 623
           +ND LG   GD ++++   R+   L+                 DILAR+ G+ F I+L +
Sbjct: 273 VNDGLGHQAGDQLIIATANRLSASLRQTDLVSRGAIDQSGGGGDILARMGGDEFTILLDN 332

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            N+       A  +  ++A    L  +++ VTASIG A   +      +ML++A++AMYH
Sbjct: 333 INSEQVPVRVAERLMSAMADAFVLDGQQVIVTASIGIALNKNGYDDVQDMLRDADIAMYH 392

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G      F  +       R+ ++ +L LA E  +L+L Y P++   D  I G EAL
Sbjct: 393 AKQQGRARWVMFDSAMQEKALRRLQLESELRLAQERDQLWLAYQPVVTPRDGVIRGFEAL 452

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP +G    +EF+ +AEE+ +I A+  ++L +  R +  W+D++   P+ + +N++
Sbjct: 453 LRWEHPVYGAAGPAEFIPVAEEIGLISAMGGWILGQACRQLRLWQDESGQ-PMTMSVNLS 511

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  N L   +   + +T      +KL  +ES+VM +PE +  +  +L+++ + L+LD
Sbjct: 512 AIQLSGNGLVALVAQTLKETGILAGTLKLELTESMVMADPEHALEIFRQLKELNVKLSLD 571

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L  +P  T+K + S ++     + +  I+  I+ +A  +   ++A+   
Sbjct: 572 DFGTGYSSLSQLRRLPIHTLKIDRSFVSQMDHHDDKRQIVEVIMMLAHTLGLDVVAEGAE 631

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              ++  L  MG D++Q  H   P+  ++     +E+ P  ++T
Sbjct: 632 TAAEVDLLQAMGVDFVQGYHFFKPMPADAAGAAWREQQPSAQHT 675


>gi|114562172|ref|YP_749685.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333465|gb|ABI70847.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 678

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 118/430 (27%), Positives = 212/430 (49%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ L   +  S         ++ ID+D++K +ND L
Sbjct: 240 QTQNKLRKMATRDPLTGLPNRTLLLETLNVTIQRSRVHKR-NFALLFIDLDRFKNVNDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     + RL G+ F I+        + ADF   +   +  
Sbjct: 299 GHALGDQFLARIARILERVVGDRGSVVRLGGDEFVILADEIQTPAQAADFVDKLLIQLNT 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     T+ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGNTAEDLIRHADIAMYSAKAAGSNQWSFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P   L   ++VG EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKFDLNTNQVVGCEALIRWQ-KDGRLISPMSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + I  W+ + N   I I +N+AS+   D  L   ++ L  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCKVIREWQRKYNY-AIPIAVNVASQQFADASLVPDIKQLAIRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E++   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIRPELLEIEITETSLMNDVEQAITKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + + ++    +  AI  +I+ + + ++ TI+A+ I      + L    C+  Q  + +
Sbjct: 597 KIDRAFVSDL-PEDSAIASTILMLGRQLDLTIVAEGIENIQQQEWLKENQCEIGQGFYFS 655

Query: 942 SPLGFNSILK 951
            PL      +
Sbjct: 656 QPLPIEEFEE 665


>gi|170740107|ref|YP_001768762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168194381|gb|ACA16328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 905

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 127/561 (22%), Positives = 255/561 (45%), Gaps = 21/561 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   R  +A+      +  +D     +      A + G+ +  +  P       +   
Sbjct: 360 LRTQYARFGIALDSMTQGLCLFDRDDRLILMNARFAAMHGVPAD-LARPGTPLADLLARL 418

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                   L          + +   +  AD +   ++    P          ++    D+
Sbjct: 419 AAHGTEGALRRRPEGADDPVAFTVDL--ADGRAISVVQAAIP-------AGGFVCTHEDV 469

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+++S E I   A  D LTG+PNR    + +  +   +         V+ +D+D +K +
Sbjct: 470 TERRRSEEQIAYLARHDALTGLPNRIPLREWMEEVF--ARRPYGDVGAVLCLDLDGFKVV 527

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD++L  + RR+  ++   D +ARL G+ F I+ +      + A  A  +  
Sbjct: 528 NDSLGHPAGDELLRLVARRLRGVVSATDRVARLGGDEFAIVQVGAEQPRQAALLAERVVA 587

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P  +  +++ + AS+G A+  S+  T   +L++A++A+Y AK  G      F    
Sbjct: 588 VLQQPFEIQGQQVVIGASLGVATALSADPTPDALLRSADIALYQAKAAGRGTWRFFDAEM 647

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  +  DL  A++  +  + Y P++      + G EAL++W HP+ G++S + F
Sbjct: 648 DLEIQRRRRLAADLRRALDEGQFEVHYQPLVEARSRALRGFEALLRWRHPEHGSVSPAVF 707

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I+ +  ++L +   +  SW +     P+ I +N++    +  +L   ++ +
Sbjct: 708 IPLAEETGLIRPLGAWVLAQACAEAASWPE-----PLKIAVNLSPVQFVQGDLVAEVRRV 762

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++T   P R++L  +ESV++ + E +  +L  LR +G  +++DDFGT  S LSYL   P
Sbjct: 763 LAETGLGPGRLELEITESVLLQDNEVTLAVLHELRTLGALISMDDFGTGYSSLSYLRSFP 822

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +         + I+R++I + + +   ++A+ +     +  L + GCD +
Sbjct: 823 FDKIKIDQSFVRNLARETDSVEIVRAVIGLGRALGMGVLAEGVETTEQLDILRQEGCDEL 882

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + P     I  L   +
Sbjct: 883 QGYLFSRPRPVTEIRSLFNAK 903


>gi|332711348|ref|ZP_08431280.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332349897|gb|EGJ29505.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 579

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 222/440 (50%), Gaps = 6/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE +++   +      D+LT +PNR S  +R    +     D+    T + + +D++ ++
Sbjct: 132 TELQEAKNKLNYLIHHDSLTNLPNRLSLRERFKQ-VKQHIDDNQKLVTFLCLGLDRFNQV 190

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+ LG   GD +L  +   +   +     +ARL+G++F +I+ +  +   + +   ++ +
Sbjct: 191 NNNLGHFWGDYLLKFVAENLTNCVDIQGTVARLNGDKFAVIIATAQHKKDVINVVKSILE 250

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           S+   I L ++E+ +TASIG A +        ++L +A  AM  AK  GG+  + +    
Sbjct: 251 SLYQTIVLDDQEVFITASIGIAIYPRDGEDVEQLLNHANQAMLQAKRHGGDQYQFYTSAL 310

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +   S+ + ++  L  A+E  E  + Y P I L   +IVG EAL++W HP+ G I  ++F
Sbjct: 311 NVNSSNHLTLQSSLRYALEREEFQVYYQPQISLETGKIVGAEALLRWHHPELGLIPPAKF 370

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  +I +I  ++L++  +    W++        I +NI+ +     E    +  +
Sbjct: 371 IPIAEETGLILSIGEWILQQACQQAKVWQND-GYTSFRIAVNISGRQFNKPEFYHNLVKI 429

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T  +   ++L  +ES+++ N E +   L  L+ +G+ + +DDFGT  S LSYL   P
Sbjct: 430 LQSTELTYRTLELELTESILVKNTETAIRQLNDLKNLGLEIAIDDFGTGYSSLSYLQQFP 489

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +   +        + AI ++II MAK++   +IA+ +  + ++  +    CD +
Sbjct: 490 FDVLKIDQCFVRNIVQKPNQAAITKAIIQMAKSLNLQLIAEGVETQEELDFIYSHKCDRV 549

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q   ++  L  +   +LL  
Sbjct: 550 QGHLISRALPASEFKRLLNS 569


>gi|92112591|ref|YP_572519.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
 gi|91795681|gb|ABE57820.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
          Length = 611

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 139/615 (22%), Positives = 257/615 (41%), Gaps = 28/615 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +W     MA    L   +++        L+V+L+G       +      + +       
Sbjct: 11  LVWTGIAAMASMSLLPTLMLR-----MAALVVVLVGGWDAWRQIRLEATRRRLTET---- 61

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
             A+  S D V   +         P    I G +   + G          H  D+  +  
Sbjct: 62  --ALTLSPDGVLISNAQNRIQAVNPAFTQITGYSVDEIRGLDPSVLSSGRH--DKAFYER 117

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
              +      G+ + E   +          +R+  ++++ G +  Y+G+  DI+  K   
Sbjct: 118 YWQTL--NATGQWEGEVWNQRKHGDEFPEWLRVHAVTDAKGRVTHYVGLFTDISRHKARE 175

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +    F+D LTG+PNR+   D L + L      + L   +  IDID +K +ND +G+ 
Sbjct: 176 QDLQRIGFEDPLTGLPNRRRLHDLLASRLQRLRAGEELDIAL--IDIDGFKAVNDAMGVD 233

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L    +R+   +    ++ RL G+ F  I            +   +R  ++ P  
Sbjct: 234 KGDRLLSRFGQRLAAFVA-GGVVGRLGGDEFMAI--RTTTFDDHEQWVEELRGHLSEPFE 290

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + E  + +  +IG          +  + +  E A+Y AK  G NH   FR S        
Sbjct: 291 IGETPLRLGLTIGSCRSPDDGRDAGVLFQRLESALYAAKRHGRNHSRRFRPSLEVEGDPQ 350

Query: 707 IK--EDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++   +L  A+ +  +L L Y     L D  + G+EAL++W HP  G IS + F+ +AE 
Sbjct: 351 LELLNELRQALAHGTQLELFYQTQHYLDDGRLAGMEALLRWYHPTQGMISPASFIPLAER 410

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++ A+  +++ER    + +WR Q  +  + + INI++  L+  +L   + A ++K   
Sbjct: 411 HGLMSALGDWVIERACAQVAAWRQQ-GVSFVPVWINISAVQLIQGDLEAKLSASLAKYHV 469

Query: 824 SPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             + + L  +ESV++          L  LR  G  + +DDFGT  S ++YL  +P D +K
Sbjct: 470 PAAMLGLELTESVLLDERAGDISARLVALRDKGHPIAIDDFGTGYSSMAYLKQLPVDKLK 529

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +    E     AI  +++ MA+ +E  ++A+ +  E     L   GC  +Q    
Sbjct: 530 LDRAFVRALPEDSADAAITSAVLAMARGLELDVVAEGVETEEQRDFLLAQGCAMVQGFLY 589

Query: 941 ASPLGFNSILKLLKE 955
           A P     +   L+ 
Sbjct: 590 ARPERVADVEARLRR 604


>gi|238797654|ref|ZP_04641150.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia mollaretii ATCC 43969]
 gi|238718518|gb|EEQ10338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia mollaretii ATCC 43969]
          Length = 664

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 119/555 (21%), Positives = 244/555 (43%), Gaps = 12/555 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                G     + G     L         + R  
Sbjct: 113 EQVVSEANSVIVILDKDGYVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASS-RKN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F   R    + E  +     +  ++       S S  +    I    DIT+++++ E
Sbjct: 172 IEGFF-QRGASYEVERWINTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  +R+ + +    T       ++ +D+D +KK+ND  G   
Sbjct: 231 RLRILANTDMITGLPNRHAIHERINSAI---QTRGETSVGIIYLDLDNFKKVNDHYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   L+  ++LARL G+ F +++ +  +  ++      +   +  P  +
Sbjct: 288 GDRLLKDVSLAILSCLEENEMLARLGGDEFIVLVEN-ASLTELEATTQRILNRMKSPFRV 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
              E+    SIG A       T   ++++A+ AMY AK  G      F     +   + V
Sbjct: 347 GLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKENGKRTYSIFSQEMNKKVSEYV 406

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L   +E  +L + Y P I     ++  +EAL++W  P+ G I+  EF+  AEE  
Sbjct: 407 WLDTNLRKGLEQHQLQVFYQPKISTQTGKVHSVEALVRWRSPERGLIAPLEFISYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L+   +  + W+++     + + +N++++ L+D  +       +  +    
Sbjct: 467 LIGPLGKWVLQTSMQQAVDWKNRGIN--LRVAVNVSARQLIDEAIVTSFIESLEASKLES 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S + +  +ES ++ + + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + 
Sbjct: 525 SLVDVELTESCLIDDEDAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G        +++R+II +A+ ++  +IA+ +    + + L  +G D  Q    A P
Sbjct: 585 SFVRGIDNNPISQSLVRAIIVVAEALKMRVIAEGVETPGEEEFLDSIGIDEKQGFLYAKP 644

Query: 944 LGFNSILKLLKERFP 958
           +  + +   L  + P
Sbjct: 645 MPADELEHWLVTQHP 659


>gi|238894718|ref|YP_002919452.1| hypothetical protein KP1_2724 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547034|dbj|BAH63385.1| hypothetical protein KP1_2724 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 562

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/537 (24%), Positives = 238/537 (44%), Gaps = 15/537 (2%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++        ++         G  S  + G       Y             +  +  R 
Sbjct: 33  AIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLF-YSEAEQLSGVPAK-NLEIALRS 90

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G+ + E      D    W  + I  + +    +L +  I  DI+EQK   + I   A  D
Sbjct: 91  GQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYD 150

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR  F +R+  ++     +D  R  +  ID+DK+K+IND+ G  +GD +L  + 
Sbjct: 151 ALTGLPNRVEFFERVEKLIT---GNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVA 207

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + + L+  +++AR  G+ F  +    ++  ++  FA  +    +        E+ ++A
Sbjct: 208 GAVLKTLQKEEMVARFGGDEFVAVKP-FSDEGEVDAFAARLWHCFSGKQTFAATEVVLSA 266

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG + +       + +L N++LAMY AK    + +  +        R    +  D+   
Sbjct: 267 SIGISVYPEDGTDINTILSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMAADIRRG 326

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y  I  + D  I G EAL++W HP+ G I    F+ IAEE   I  +  ++
Sbjct: 327 IHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQLGTIPPDVFIPIAEESGAIVPLGYWV 386

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++  +        N     + +NI+   L      E ++ ++ +T Y  S ++   +E
Sbjct: 387 LEQVCNE-----SLENGLNRKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTE 441

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           +  + N + +  +L  L+K+GIS+ LDDFGT  S LS L    FD +K + S MT   S 
Sbjct: 442 TAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSMLRDFHFDVIKLDRSFMTDVESN 501

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  + +R+II +  +I T +IA+ +     ++ L   GCD +Q      P+    +
Sbjct: 502 PQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHL 558


>gi|148550650|ref|YP_001260089.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
 gi|148503069|gb|ABQ71322.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
          Length = 813

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 148/771 (19%), Positives = 299/771 (38%), Gaps = 51/771 (6%)

Query: 210 YMVNRSSML-IPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF 268
           +    S  L +    +   +  + +     L     +  G  +     S + + +     
Sbjct: 40  WTDTGSRSLWLTMAGLTAGLGIWATHFIAMLGYDPGIVMGYHVQQTVVSLLVVLAGATAG 99

Query: 269 LFMYLHWNRWHAKVGYIT-FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           LF+      W   +   +   G         M+              +A+  ++    ++
Sbjct: 100 LFIATRAPHWLGSLLAASVMGGGVTAMHYLGMAALEMPALIRWKADYVAASAVFAIVPLV 159

Query: 328 YHGM-----KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
                    +   +            +      M     + +      L       + L 
Sbjct: 160 LALPLALRGRSLAKGAAAAGLITAAVVLLHFTGMTAITLIPSRGEFSPLSMMSPRAMSLW 219

Query: 383 GF-------------------TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
            F                   T I+           +     +  LA+      +  +D 
Sbjct: 220 IFLAASCTIALTAAAAITSRRTGIKLRRQERENQLRVQGMKAQLDLALENMHQGLCLYDG 279

Query: 424 VRDRVTTTPDIATILGLASGSMHGP-------IRNWLPYIHINDRDNFRTILDSFVGYRR 476
               +        + GL S ++                ++ + + +     ++  +    
Sbjct: 280 DGRLLLWNQRFLDLYGLGSDALQCGMTVGQVIRTGIANHLPVTEVEQRAAEIERNLNQAL 339

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                   +         +  R  P    +G    ++   +DIT+Q++S E I   A  D
Sbjct: 340 SASGDAPAISEYPGVVVSVRSRALP----DG---GWVSTFDDITQQRRSEERIRHLALHD 392

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR+ F D +   LD++A   + R  ++V+D+D +K IND  G + GD  L  + 
Sbjct: 393 GLTGLPNRRRFNDVVDRDLDVTARAGS-RLGLVVVDLDNFKDINDSRGHSAGDQALKMVA 451

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + + ++  + +ARL G+ F   ++   +   +ADF   +   +A        +++V A
Sbjct: 452 AALKDAVRENEHVARLGGDEFAAAILYREDYE-LADFVTRLSTGLAAINAGNAHDLSVHA 510

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA 714
           S+G A++ +      ++  +A+LAMY AK   G  +  +   +     +R  +  DL  A
Sbjct: 511 SLGIATYPADSQDREQLCNHADLAMYRAKGTVGERICYYEKGMDEQARERRQLAADLRGA 570

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
               E+ ++Y P   L D+ + G EAL++W HPK G +    F+ +AEE   I A+  ++
Sbjct: 571 AARGEMTILYQPQRSLKDDRVNGYEALLRWTHPKRGLVPPDIFIPVAEETGEILALGEWV 630

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +   +   W D      + + IN+++  L    L E +   + +T  +P R++L  +E
Sbjct: 631 LRQACEEAARWGD-----GLTVAINLSAVQLSQASLPESVAQTLLETGLAPRRLELEITE 685

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-- 892
           + ++ +  R+  +L RL+ +GI++ +DDFGT  S L  L   PFD +K + S + GS   
Sbjct: 686 TAIIADKPRALHILRRLKAMGIAIAIDDFGTGYSSLDTLNSFPFDKIKIDKSFVIGSEER 745

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            +  AI+R+++ +  ++   ++A+ +     +  L   GCD +Q      P
Sbjct: 746 PQARAIIRAVLALGHSLGVPVLAEGVETSGHVDLLVAEGCDQVQGYLFGRP 796


>gi|126172453|ref|YP_001048602.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125995658|gb|ABN59733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
          Length = 706

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 233/556 (41%), Gaps = 8/556 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S  +  S + V+  D     +     +  I G ++  +      +L          
Sbjct: 153 KEILSTTLEESAEAVYITDTDDHILAVNKAMCRICGYSAEQLISKTPEFLEL---KSHHL 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                      +RG  Q E   + +D          R +   +GD    + I +DI+ +K
Sbjct: 210 GEETECQIALKQRGFWQGETWKKRSDGSNFPAWQSSRKIITEDGDHYN-VNIFSDISTKK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A  D LTG+PNR      L   L+   TD      +M +D++ +K IND  
Sbjct: 269 LLETQLTTRAMYDTLTGLPNRFHLKQILNKALEKLKTDPLTLGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFES 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
           P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +   L  A    +  L Y  I+ L   + +  EAL++W         +++F+ + E
Sbjct: 449 LKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQTIAAEALLRWQKSPTEYYDAADFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I +I  ++LE+       WR         I +N++   L   +  + +   +    
Sbjct: 509 ETGLIVSIGQWVLEQACVQAALWRAHN-QADFRISVNVSPLQLEHLDFIDQVINALEMAN 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE++RL L R++ +G+S+ +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +        E     +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNEVSGQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK-LLKER 956
            P   ++  +  L E+
Sbjct: 688 YPSSVDNFTQTFLTEK 703


>gi|254430065|ref|ZP_05043772.1| PAS fold family [Alcanivorax sp. DG881]
 gi|196196234|gb|EDX91193.1| PAS fold family [Alcanivorax sp. DG881]
          Length = 864

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 128/571 (22%), Positives = 239/571 (41%), Gaps = 16/571 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V A     Q +  + ER  + +    D V   D +       P   ++ G       G 
Sbjct: 279 DVTAEKGMQQSLAHEKERLRVTLTSIADGVVATDEIGRVTFMNPVAESLTGWREAEAEGL 338

Query: 449 IRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNS 505
               +  +  +D         +   +         E   +++ D   + +     P+ ++
Sbjct: 339 PVGDI-LMLSDDNATMPIPNPISVALSGGDVCFLREGSMLQSRDGSRYEIQDSAAPLKSA 397

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G +   + +  D+T ++   + +  +A  D LTG+ NR+ F + L   LD    + ++ 
Sbjct: 398 DGQVTGAVMVFRDVTSRRAMQKKLRYHATHDALTGLTNRREFENTLQESLDEPGAEHSM- 456

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +  ID+D++K +ND  G   GD +L    R IG  ++  D++ARL G+ FG++L    
Sbjct: 457 --LCFIDLDRFKVVNDTAGHVAGDALLRECARVIGRQVREGDVVARLGGDEFGLLLRHCP 514

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               I      +     +     E    + AS G     ++ IT  E +  A++A Y AK
Sbjct: 515 AQRAIQIAERLIGALGDIRFAWKESLYDIGASAGLVQLDANVITVEEAMSRADVACYAAK 574

Query: 686 HRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM-DEEIVGLEA 740
           HRG N V  +         R   + +   L  ++E++   L    I  +    E    E 
Sbjct: 575 HRGRNRVSVYTPDDSEASRRHLELQMAAGLRESLESNRFLLYAQEIRPIDASTEPSHYEV 634

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++        ++   F+  AE   M+  I+ ++L ++   +         P + I IN+
Sbjct: 635 LLRLRDRNGDILNPGSFIPAAERYQMMPHIDRWVLTQLLVSLSDELAAL--PQLNIAINL 692

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++  L D      +++L+SKT  SP R+    +E+ V+     +  LLGR+R+ G  + L
Sbjct: 693 SATSLDDPTFMPFLESLLSKTSLSPERLTFEITETTVVNQLSSASDLLGRIREQGCKVAL 752

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S  SYL + P D +K +GS +     +     I+ SI  +A  +    +A+ +
Sbjct: 753 DDFGSGFSSFSYLKHFPVDFIKIDGSFVRNLLHSSVDRTIVESINEVAHRLGVKTVAEYV 812

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                I  L   G D++Q   +  P   +++
Sbjct: 813 EEHALIGVLEEAGVDFVQGYAIGRPQPLSAL 843



 Score =  106 bits (264), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 88/288 (30%), Gaps = 11/288 (3%)

Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWH--------AKVGYITFSGIACIAILFCMSF 301
             +      + +     +FL   L  NR           +           +A+L     
Sbjct: 2   QGVLIGAVTVTVVLLAALFLRCVLRRNRAELAQVKDSEIRFRLAMKHSSIGMALLSPRGE 61

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
           +  +  A           L  T F          ++  ++   +   I    L      R
Sbjct: 62  WQAVNHALCDLAGYDEAGLLSTSFQDISHPDDLLKSRGMLADLLSGDITGYSLEQRFITR 121

Query: 362 LDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
             +D+     V  + +   +      ++++ A     Q +     R  +A+   G  +W 
Sbjct: 122 RGDDLWVRLSVSAVRVEGQVSYLIAQVENIHAAKLSEQALQESRHRLQMALEVGGVGIWQ 181

Query: 421 WDIVRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           +    D +     +  + G+  G+   G ++ W   +H +D  +        +      L
Sbjct: 182 YSPQSDVLFWDERMYELYGVQPGAPGDGTLQIWRDQVHPDDYTDINAAFQRVIAGEED-L 240

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             EFR      +   + +R   +  S+G     +G   D+T +K   +
Sbjct: 241 DTEFRTLRPGGEIRHIRVRAETVVRSDGAETLVVGTNWDVTAEKGMQQ 288


>gi|207727958|ref|YP_002256352.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591201|emb|CAQ56813.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 701

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 210/436 (48%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   K+ + +   A  D+LT + NR    DRL   +  +  +      +M +D+D +K +
Sbjct: 250 TSLAKANKELAYLALHDSLTKLSNRLLLEDRLEQAIRSAGRNRG-SFALMFLDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G   GD +L  + RRI   ++  D +AR+ G+ F  +L S          A A+  
Sbjct: 309 NDVYGHHAGDLLLADVARRIVACVRLQDTVARVGGDEFV-VLASVGEPADAGTLADALLA 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P  +    + V+ SIG A +     +  ++L NA+ AMYHAK  G +    F  S 
Sbjct: 368 AAREPFLVDGHALQVSTSIGIALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASM 427

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++ + +DL  A+E  EL L Y P     D  +VG+EAL++W HP  G +    F
Sbjct: 428 NANVHKQLQLVQDLRQALERRELVLHYQPKFSAPDGPVVGVEALVRWQHPSRGLVPPDAF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  ++L+   R +  WR +       I +N+++       L + ++  
Sbjct: 488 IPLAEKTGLIVPLGAWVLDEACRQMAQWRRE-GRTSWSIAVNLSAVQFAHAALVDTVRDT 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LARHALEPPCLTLEITESTAMRDADASLRILQQLHAMGVRISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +       +  AI+ +++ + + +   I+A+ +  E     LTR+GC  +
Sbjct: 607 ASELKIDRGFVRDLAHDTEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHAL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q + +  P+   ++ +
Sbjct: 667 QGNLLGRPMTAQALAE 682


>gi|262275453|ref|ZP_06053263.1| regulatory component of sensory transduction system [Grimontia
           hollisae CIP 101886]
 gi|262220698|gb|EEY72013.1| regulatory component of sensory transduction system [Grimontia
           hollisae CIP 101886]
          Length = 583

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 234/447 (52%), Gaps = 9/447 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I+  A  D+LTG+ NR   LDRL   +        +    M++DID +K IND 
Sbjct: 130 RRNEALIMQRALYDSLTGLANRNLTLDRLRYAIAHDLRRGLMTGA-MLVDIDNFKMINDT 188

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           L   VGD VLV L+RRI + L+  D + R+SG+ F I+L   + +      A  +RK+I 
Sbjct: 189 LSHDVGDQVLVELSRRIVKTLREVDTVGRVSGDEFLIVLPGLHQTENACQLASKLRKAIN 248

Query: 643 MPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
            PI +    E+ VTASIG +           +  NA++A + AK  G +    F   ++ 
Sbjct: 249 QPIEINGGGELYVTASIGISLSPLDSDDFKRLFGNADVAKHQAKEGGKDSFRLFTSEMND 308

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ ++  L  A+   E  LVY P+  L +  I G EAL++W++ + G ++ +EF+ 
Sbjct: 309 NVHRRLRLEYHLVRALSRCEFSLVYQPLYDLKNNSITGAEALLRWNNDELGAVAPAEFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I  I  F+L++   D  S  D +   P+ + +NI+ + +      + +  ++ 
Sbjct: 369 IAEQSNLIYEIGKFVLDKAMEDFSSLNDPSGN-PLHLAVNISPQQIRQPHFIDDLTGILE 427

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K  +  SR++L  +E++++ N    + ++ +L  +G   ++DDFGT  S LSYL   PFD
Sbjct: 428 KHGFEASRLELEVTENLLLSNQPNVKKMIKKLHNLGTEFSMDDFGTGYSSLSYLLQFPFD 487

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + + G T+   + A+  ++I MA+ ++   +A+ +  E  ++ L   GCD  Q 
Sbjct: 488 ALKIDRTFVDGITDVEMKEALATAVISMAQGLQIKTVAEGVETEEQLEMLKSKGCDLAQG 547

Query: 938 SHVASPLGFNSILKLLKERF--PLVKN 962
            +++ P+   ++ KLL  +   P  K+
Sbjct: 548 YYLSRPVDIENLRKLLDNQESKPESKS 574


>gi|300115382|ref|YP_003761957.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299541319|gb|ADJ29636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 997

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 143/771 (18%), Positives = 280/771 (36%), Gaps = 32/771 (4%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
            + +   R  +         + +  +++    +  + +   G  L      +I LS  ++
Sbjct: 215 VMLWFSFRLGLFACGVLGLVITIIVVALTLQGVGPIASQVGGISLTTIQTLQIYLSLVIL 274

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
             L + +           I  S     +    +    P +  SI R      V  Y   I
Sbjct: 275 PALMISIERENRLRAEAEIIQSQARYRS----LYHDTPAMLHSIDRQGRLLSVSAYWLTI 330

Query: 327 IYHG---MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-- 381
           + +    + G      +  A     I  +      +    +   Q     G V  V+L  
Sbjct: 331 MGYERDEVIGRRSTDFMTDASRRYAIEVVLPAFMRSGVCRDIPYQMVKKNGEVFDVLLSA 390

Query: 382 -----------IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
                         TV+  V A       + ++ ER  + +   GD V   D        
Sbjct: 391 TAEHNPDGSVAHSLTVMHDVTARKRAETALVAEKERAQVTLESIGDGVITTDANGRINYL 450

Query: 431 TPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAA 488
            P    + G    +     ++     I+ +  +     L   +      R  +   +   
Sbjct: 451 NPIAEAMTGWLLAAAQDKALQEVFQIINESTCEPAADPLAPCLTGNPIVRSTHSTVLINR 510

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
               + + I   P+ +SN  +L  + + +D++EQ++    I   A  D LTG+ NR+ F 
Sbjct: 511 HGTEYSIEISAAPIRDSNRQVLGAVLVFHDVSEQRRLQREIAHQAQHDALTGLVNRREFE 570

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            RL  +++ +A   N    +  +D+D++K +ND  G   GD +L  L     + ++  D 
Sbjct: 571 QRLQRVIE-AAQTQNSEHALCYLDLDQFKVVNDTCGHTAGDSLLQQLATLFEKNIRRHDT 629

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LARL G+ FG++L        +       +           +   +  SIG     S+  
Sbjct: 630 LARLGGDEFGLLLEHCPLDSALRIVNTLRQTVEDFRFCWNGQYFRIGVSIGLVPINSANS 689

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVY 724
           + + +L+ A+ A Y AK  G N +  +R        R   +     +  A+E     L  
Sbjct: 690 SVASVLRAADSACYVAKDSGRNRIHIYREHDVDLARRHGEMQWVARIQQALEEDRFQLYA 749

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+         +  E L++             FM  AE   +  AI+ +++ +  R +
Sbjct: 750 QPIVPFKKLPSGGIHCELLLRLVENDGKISPPGAFMPAAERYNLAVAIDRWVVSQALRWL 809

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +     +   +   IN++ + + D      +      T  S  +I    +E+  + N  
Sbjct: 810 ATHPALLDRIML-CTINLSGRSIGDRFFHAYVLRQFDDTGLSAKKICFEITETAAVANLA 868

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +   +  L+K G   +LDDFG+  S  +YL  +P D +K +G  +         +A++R
Sbjct: 869 DATRFMQALKKRGCRFSLDDFGSGLSSFAYLKALPVDFLKIDGLFVKDIVHDPIDLAMVR 928

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           SI  +   +    +A+ +     + +L  +G DY Q   +  P   +++LK
Sbjct: 929 SINEIGHLLGKKTVAEYVENNAILDKLRNLGIDYGQGYGLGRPQPLSALLK 979


>gi|229588654|ref|YP_002870773.1| hypothetical protein PFLU1114 [Pseudomonas fluorescens SBW25]
 gi|229360520|emb|CAY47377.1| conserved GGDEF domain protein [Pseudomonas fluorescens SBW25]
          Length = 627

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 241/490 (49%), Gaps = 14/490 (2%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D  +  ++     E R  A+   + W +        +    L+   +   + E+ + L  
Sbjct: 138 DQLLILKKPFDNLEIRQMASALTWKWQL--------AQDVALKVSSLERTVEERVQELLK 189

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +      D LT +PN     DRLT  + L    D  +  VM I +D++K+IN+ LG  VG
Sbjct: 190 VSHLLQYDALTELPNSTLLGDRLTQAMALGRRHD-TQLAVMFIGLDRFKRINNALGYPVG 248

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D+VL  +++ +   ++  D + R   + F I+L    +  +    A  + K I+   ++ 
Sbjct: 249 DEVLQQVSQSLVAAVRESDSVFRYGSDAFVIVLNDILHPQQTQGVAQKLLKVISATRHVA 308

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
             ++++TAS+G + + +   T+ E++K+AE AM+ +K RG +    +   ++     +  
Sbjct: 309 GHDLSITASLGISIYPNDSGTAVELIKHAETAMHTSKERGPDSFSFYTDAMNLRAQHQQN 368

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  +  A++  E  L Y P + L    IVG EALI+W  P+ G +S  +F+ +AE+  +
Sbjct: 369 LESAIRQALKRDEFVLHYQPKLDLKSGRIVGAEALIRWFQPRSGWVSPVDFIPVAEDSGL 428

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++L    +   +WR    +P + I +NI++ D    +  + + A++ ++   P 
Sbjct: 429 IVRLTQWVLREACQQAQAWR-VMGLPSLCISVNISAIDFRQRDFVDNLAAILKQSGLPPD 487

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ESV+M N + +  +L +++ +G+ L LDDFGT  S LSYL   P D +K + S
Sbjct: 488 RLELEITESVLMQNVDDTVEMLNKIKAMGVRLALDDFGTGYSSLSYLRRFPIDVLKIDQS 547

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         ++ +II M K++  +IIA+ +     +K L    C+  Q    +  +
Sbjct: 548 FVQGLNVNNQDEQLISAIIGMGKSLRLSIIAEGVETLEQLKFLQTQQCEEGQGHLFSKAV 607

Query: 945 GFNSILKLLK 954
                 +LL+
Sbjct: 608 PSKDFAQLLQ 617


>gi|304310120|ref|YP_003809718.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) precursor [gamma proteobacterium HdN1]
 gi|301795853|emb|CBL44052.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) precursor [gamma proteobacterium HdN1]
          Length = 691

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 229/469 (48%), Gaps = 14/469 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQ--------DNLTGIPNRQSFLDRLTTILD 556
            + ++ R+I  AN + +  +  + +   A          D LTG+PNRQ     L  +L+
Sbjct: 218 EHDELGRWIDTANQMLDSIEHHQRLHQEAQHNLQHLTQFDALTGLPNRQRLQSSLEQMLE 277

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +    + R  ++ + +D +K IN+     VGD +LV+L+ R+         +ARL G++
Sbjct: 278 GAGRLQS-RLAILCVGVDDFKGINERYSYQVGDQLLVALSERLRRYGGRSGTIARLGGDQ 336

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++    +   ++A  A  +   +     +    + + A+IG   +     ++  +L+ 
Sbjct: 337 FVLVRADFDEPYQVAALAQNILDDLESTFPIDGFRVQLRATIGITMFPEDGKSTEVLLQK 396

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AE  M  AK R  N  + F   + +    R  +  DL +A++  E +LVY P I L   +
Sbjct: 397 AEQTMTLAKSRSRNRYQFFVASIDNEIRHRRELDNDLRVALQRDEFFLVYQPQIDLKKYQ 456

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +VG+EALI+W HP +G +    F+ +AE+   I AI  ++L++  R + +W D      +
Sbjct: 457 VVGMEALIRWQHPAYGLVPPDVFIPLAEQNNCILAIGDWVLDQACRQLRAWCD-LGYGNL 515

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+++  L   +L E ++ ++ +   SP++++L  +E+ +M +   +   L  LR +
Sbjct: 516 RVAVNLSAVQLRRGDLPETVKNILRQHKLSPNQLELEVTETGLMEDIATAARHLNDLRDL 575

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G+ L +DDFGT  S L+YL  +P D +K + S +      E    I+R+II +  ++   
Sbjct: 576 GVGLAIDDFGTGYSSLTYLENLPLDKIKIDKSFVHDLLEDEGDATIVRAIIQLGASLNMQ 635

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           +IA+ +        +   GCD  Q    + PL     LK L+E   + +
Sbjct: 636 VIAEGVETVEQEAYILAQGCDEGQGYLYSKPLQPEDFLKFLREEQHISR 684


>gi|94309536|ref|YP_582746.1| putative sensor protein [Cupriavidus metallidurans CH34]
 gi|93353388|gb|ABF07477.1| putative signal transduction protein containing a membrane domain, an
            EAL and a GGDEF domain [Cupriavidus metallidurans CH34]
          Length = 1121

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 232/574 (40%), Gaps = 13/574 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   GD V   D V       P    + G +  +  G   +
Sbjct: 548  EQRTLTRALFEEKERLQITLRSIGDAVICTDRVMRVTFMNPIAEQLTGWSLDAAMGQPLD 607

Query: 452  WLPYIHINDRDN-FRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +  I          + ++  +   R     E   +++   + H +     P+  ++G +
Sbjct: 608  QVFRIVDEITGLTIPSPVEQCLETLRPAYLQEGAVLQSLTGERHDVQDSAAPVLTNDGGV 667

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            L  + +  DIT  +     +  +A  D LTG+PNR  F  RL    + +    + R  + 
Sbjct: 668  LGAVLVFQDITSSRAMQRELAHSATHDALTGLPNRAWFEKRLREACEQARLLGH-RTALC 726

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             ID+D++K +ND  G   GD +L  L   I   ++  D+LARL G+ F ++L   +    
Sbjct: 727  FIDLDRFKIVNDTAGHGAGDVLLRELGYVIRHHVRPDDLLARLGGDEFALLLKDCSIDHA 786

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                   +            R   V ASIG A+  +     SE++  A++A Y AK  G 
Sbjct: 787  EQVCQKVINAIRERRFPWEGRVYDVGASIGIAAIDADAPPVSELMSRADVACYAAKAAGR 846

Query: 690  NHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQ 743
            N V  +R            + +   +  A+E +   L    I       E    +E L++
Sbjct: 847  NRVSVYRRDESDARRHHRELEVAAGIHSALEANRFRLYVQEIQPLQPETEHARHVEVLVR 906

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                +   I    F+  AE   ++  ++ +++  +          A +P + + IN+++ 
Sbjct: 907  MVDEQGTLIMPGAFIPAAERYDLMGHVDRWVIRNVLHQFGE--RLARVPDLVVSINLSAN 964

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             L +  L   +   +  ++    R+ L  +E+ ++ N   +  LL  +R  G ++ LDDF
Sbjct: 965  SLGEPFLLPFLHTTLEDSMLPAERLLLEITETALIHNMTAASRLLKEMRHAGCTVALDDF 1024

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
            G+  S  +YL   P D +K +GS +    +      I+ SI  +   +    +A+ +  E
Sbjct: 1025 GSGLSSFAYLKQFPVDYLKIDGSFIRNLADNVVDREIVSSINDIGHRLGVRTVAEWVEDE 1084

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +  L  +G DY Q   +  P+     L++ + 
Sbjct: 1085 ATLCVLRAIGVDYAQGYAIGRPMPIEIFLEICEN 1118



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 83/295 (28%), Gaps = 22/295 (7%)

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
               W A +   +    ++         R  A +       +  + +L        +V  
Sbjct: 165 WWAWWNAGAIGMVMLLPLMVSIS---RERVQAALRRPMLLRLIALFVLCMAIGTGAIVAG 221

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
               + ++  ++                      A + +        +A    +     +
Sbjct: 222 HEPFVVMSLPLVIVALASN-----------PFATALLTLVSALALEGIAHLGGMQFLASR 270

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
              + G +++V  I    +            + S   R   A+  S   +    +     
Sbjct: 271 ATPLSGALILVFPICIAFMTE--QNRNGRAELRSSERRFRQALEHSAIGMALVGLDGKWQ 328

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                +  +LG ++  +      +    H  D     + LD  +       + E R R  
Sbjct: 329 LVNRAMMDLLGYSAEELRDLP--FQVMTHPEDLAADLSQLDRLLTGEIDAYRLEKRYRHK 386

Query: 489 DNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              + W ++ +  + + + G+   +I    DI  +K + E +     +   T + 
Sbjct: 387 QGHYLWALLAVSLVRDEHSGEPRHFIAQIEDIHTRKLAQEQLEAQTRR---TQLA 438



 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 106/337 (31%), Gaps = 30/337 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I+ +       + + +   R  LAV   G  +W+WD     +T    +  + G    
Sbjct: 412 IAQIEDIHTRKLAQEQLEAQTRRTQLAVEAGGVGIWEWDFNTAAITWDARMYALHGTDME 471

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +  W+  IH  D     + +   +   R R   E+R+     +   +        
Sbjct: 472 LGPPSLAEWIAKIHPEDVSRVSSEMRQAIRGAR-RFDTEYRIVRPAGETRHVRAMAMISR 530

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G     +G   DITEQ+              LT    R  F ++    + L +  D 
Sbjct: 531 HEDGTAHSLVGTNWDITEQR-------------TLT----RALFEEKERLQITLRSIGDA 573

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +  T  V+ +     I + L     D            + +  D + R+  +    + I 
Sbjct: 574 VICTDRVMRVTFMNPIAEQLTGWSLDA----------AMGQPLDQVFRI-VDEITGLTIP 622

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +     A  +  A+  +L      V  S          +  + ++   ++    
Sbjct: 623 SPVEQCLETLRPAYLQEGAVLQSLTGERHDVQDSAAPVLTNDGGVLGAVLVFQ-DITSSR 681

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           A  R   H  +    +   +R   ++ L  A E + L
Sbjct: 682 AMQRELAHSATHDALTGLPNRAWFEKRLREACEQARL 718


>gi|158422040|ref|YP_001523332.1| putative signaling protein [Azorhizobium caulinodans ORS 571]
 gi|158328929|dbj|BAF86414.1| putative signaling protein [Azorhizobium caulinodans ORS 571]
          Length = 804

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/576 (21%), Positives = 232/576 (40%), Gaps = 21/576 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +    +              R       S D +   +   +          + G  + 
Sbjct: 218 AAMAVDRMELRRLDHARNISQARFENIAATSPDAIICMNAQGEIGFWNSSAERLFGHGAQ 277

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR----LQYEFRVRAADNQFHWMIIRI 499
            +HG        +          +L   +    G       +E   R  D         +
Sbjct: 278 DIHGRSC---RILVPGHLRRAYDVLMERMRRGGGLGSALRTFEVTGRRRDGVEFPAECSL 334

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                 +G  L    I  D+++++++ E +   A +D LT +PNR ++   L+  L    
Sbjct: 335 S--IWRDGPNLSVGAIVRDVSDRRQNEERLFRLASRDTLTDLPNRSAWRQCLSQTLA--- 389

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  TV++ID+D +K+ ND LG + GD VL  +  R+        I+ARL G+ F +
Sbjct: 390 --SEPGATVLMIDLDGFKEANDTLGHSAGDAVLKEVAGRLASSCHEALIVARLGGDEFVV 447

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L   N+  +    A  +  ++     + ER++++ ASIG A + +      +++  A+L
Sbjct: 448 LLAG-NDEHRARVVAERVVAAVTDRYGVGERKVSIGASIGIAFYPAHGARGEDLISAADL 506

Query: 680 AMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G    E F          R   +E+L  A EN E  L Y P +     +++G
Sbjct: 507 ALYRAKAGGKGCYEVFTPMLREVAIARRAFEEELRRAFENGEFELYYQPQVLTSRGQLMG 566

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP+ G ++   F+ +         +  ++L    R    WR    +P   + 
Sbjct: 567 AEALLRWNHPQRGLLTPVSFLDVLSHKPSAAEVGEWILNTALRQAAEWR--VAVPGFRMG 624

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+         L   ++  ++++   P  ++L   E++++     +  LL  LR +G+ 
Sbjct: 625 VNLFEAQFRSGRLMSTVRRALAESGLPPDALELEIVETILLQTDPATIRLLHDLRALGVG 684

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIA 915
           L  DD+GT  + LS L   P   +K + S +       +  AI+++++ + +    ++IA
Sbjct: 685 LAFDDYGTGFASLSLLKRYPVSRLKIDRSFLRNVNDAPRDAAIVKAVLFLGRAFGMSVIA 744

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  E  +  L   GCD  Q      P+       
Sbjct: 745 EGVEDERQMAFLRENGCDEAQGYLFGRPMPAREFAA 780


>gi|113476118|ref|YP_722179.1| diguanylate cyclase/phosphodiesterase [Trichodesmium erythraeum
           IMS101]
 gi|110167166|gb|ABG51706.1| diguanylate cyclase/phosphodiesterase [Trichodesmium erythraeum
           IMS101]
          Length = 615

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 232/478 (48%), Gaps = 44/478 (9%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +L  AF D LTG+PNR  F + L  +L  S  D + +  V+ +D+D++K IN
Sbjct: 129 KHRQKQATLLYKAFHDGLTGLPNRNLFFNELKLVLHQSRKDLSYKYGVLFLDLDRFKVIN 188

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD VLV ++RR+   +K  D +ARL G+ F I+L S  ++      A+ + + 
Sbjct: 189 DSLGHVIGDQVLVIISRRLQNYIKASDTVARLGGDEFTILLRSLPDADYATKVAMKINQE 248

Query: 641 IAMPINLLEREITVTASIGFASWTSSKIT---------------SSEMLKNAELAMYHAK 685
           +A PI +   EI  T SIG  +                        ++L+ A++AMY AK
Sbjct: 249 LAQPIYVEGHEIFTTVSIGIVTNCKQFSDQLGENSFPICPIYNHPEDVLRAADIAMYRAK 308

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVE-------NSELYLVYHPIIRLMDEEIV 736
             G    E F   +       + ++ DL  AVE       NS+ +L Y PII L   +I 
Sbjct: 309 DLGKARYEVFDLTMHREVVSLLELENDLRRAVEMIKQNPVNSQFFLSYQPIICLTTNKIT 368

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-------- 788
           G E L++W HP  G I   +F+ +AEE  +I  + +++L      +  W+ +        
Sbjct: 369 GFECLVRWAHPTKGLIQPGKFIPLAEETGLIIPLGMWILRTACHQLAVWQKRLTGRHVCS 428

Query: 789 --------ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                          + +NI+SK++      E +  +++ T   P  + L  +ES++M N
Sbjct: 429 GLAYSDCNFIAHNFTMSVNISSKNISQPNFLEQVNEILAATNCQPHCLNLEITESLIMTN 488

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---- 896
            + +  +  +L+   I L++DDFGT  S LSYL   P +T+K + S ++           
Sbjct: 489 VDLATAVFEKLKNQNIRLSIDDFGTGYSSLSYLHQFPINTIKIDRSFVSQLDSDTSGQTL 548

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            I+ ++I +A N++  IIA+ I  +  + +L ++ C   Q    + PL  +S+ +LL+
Sbjct: 549 KIVSAVIALANNLDLEIIAEGIETKAQMNQLKQLKCRKGQGYFFSKPLTTSSVNELLQ 606


>gi|110835294|ref|YP_694153.1| putative signal transduction protein [Alcanivorax borkumensis SK2]
 gi|110648405|emb|CAL17881.1| conserved hypothetical signal transduction protein [Alcanivorax
           borkumensis SK2]
          Length = 875

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 126/579 (21%), Positives = 242/579 (41%), Gaps = 17/579 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V A     Q +  + ER  + +    D V   D         P   ++ G       G 
Sbjct: 292 DVTAEKSMQQSLAHEKERLRVTLTSIADGVVATDEAGRVTFMNPVAESLTGWREEEAEGM 351

Query: 449 IRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSN 506
               +  +  ++        +   +         E   ++  D   + +     P+ ++ 
Sbjct: 352 PVGDVLKLSEDNVSGPSPNPITVALNGGDVCFLREGSMLQNRDGSRYEIQDSAAPLKSAE 411

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +   + +  D+T ++   + +  +A +D LTG+ NR+ F + L   LD    ++N+  
Sbjct: 412 GQVTGAVMVFRDVTTRRAMQKKLRYHATRDALTGLTNRREFENTLLESLDEEGPENNI-- 469

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +  ID+D++K +ND  G   GD +L    + IG  ++  D++ARL G+ FG++L     
Sbjct: 470 -LCFIDLDRFKVVNDTAGHVAGDALLRECAQVIGRQVREGDVVARLGGDEFGLLLRHCPA 528

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                     +     +     E    + AS+G     +   T  E +  A++A Y AKH
Sbjct: 529 QCATQIAESVIAALGEIRFAWNESLYDIGASVGLVQLDADVSTVEEAMSRADVACYAAKH 588

Query: 687 RGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEAL 741
           RG N V  +         R   + +   L  ++E++   L    I  +    E    E L
Sbjct: 589 RGRNQVSVYTSDDSEASRRHLELQMAAGLRESLESNRFLLYAQEIRPIDPRSEQSHYEVL 648

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++        +S   F+  AE   M+  I+ ++L ++   +    D A +P + + IN++
Sbjct: 649 LRLRDRNGDILSPGAFIPAAERYQMMPHIDRWVLTQLLITLSE--DLAALPHLNLAINLS 706

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L D      +++L+++T  SP R+    +E+ V+     +  LLGR+R+ G  + LD
Sbjct: 707 ATSLDDPTFIPFLESLLNQTPLSPERLTFEITETTVVNQLSSASDLLGRIREQGCKVALD 766

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S  +YL + P D +K +GS +     +     I+ SI  +A  +    +A+ + 
Sbjct: 767 DFGSGFSSFNYLKHFPVDVIKIDGSFVRNLLHSSVDRTIVESINEVAHRLGVQTVAEYVE 826

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
               I  L   G D++Q   +  P     +  L +++ P
Sbjct: 827 ELALIPVLEEAGVDFVQGYAIGRPQP---LSALFEQQQP 862



 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 6/293 (2%)

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHW---NRWHAKVGYITFSGIACIAIL 296
             L    + + ++  A +   +    ++F    L          +           +A+L
Sbjct: 10  YTLFWTNAMQGVLVGAVTVAIVLLGALLFQRSRLRLAQVKDSEVRFRLAMKHSAIGMALL 69

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
                +  +  A    +     +L  + + +        ++  ++   +   I    L  
Sbjct: 70  SPRGEWQAVNHALCDLMNYDEELLLGSSYQVITHPDDQLKSRSMLEDLLAGEIEGYSLEQ 129

Query: 357 AITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                    I     V  +     +      ++++ A     Q +    +R  +A+   G
Sbjct: 130 RFIASGGESIWVRLSVSSVSAEGAVSYLVAQVENIHAAKLSEQALQESRQRLQMALEVGG 189

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +W +    + +     +  + GL  G+   G +  W   +H +D     T     +  
Sbjct: 190 VGIWQYSPQNNVLFWDERMYELYGLQPGAPGDGSLDIWRNSVHPDDYTEITTAFQRVIDG 249

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               L  EFRV     +   + +R   ++ ++G     +G   D+T +K   +
Sbjct: 250 GED-LDAEFRVCWPGGEIRHIRVRAETVARADGGDALVLGTNWDVTAEKSMQQ 301


>gi|300866823|ref|ZP_07111501.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300335173|emb|CBN56661.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1117

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 113/607 (18%), Positives = 241/607 (39%), Gaps = 46/607 (7%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            V+    +V + V       Q +F + E   + +   GD V   D      +  P    + 
Sbjct: 492  VLTHWVSVQRDVTDRKQMEQALFEEKELAQVTLQSIGDGVITTDAGGRIYSLNPVAEKLT 551

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA---------D 489
            G ++    G +   +  I          I  + +         E R+             
Sbjct: 552  GWSTTEAKGLLLAKVLRI-------VNEITRAPMENITQTALLEDRIVDQTNNGILVAIS 604

Query: 490  NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
             +   +   + P+  S+G I+  + +  D+T+ +     +   A  D LTG+ NR+ F  
Sbjct: 605  GREFAIDHSVAPIHTSDGRIIGAVVVFRDVTQVRTQARQLSWQATHDALTGLVNRREFEY 664

Query: 550  RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            +L   +  +         ++ +D+D++K +ND  G   GD++L  ++      ++  DIL
Sbjct: 665  QLEQAILGAQNLKEEHI-LLYLDLDRFKIVNDTCGHIAGDELLRQVSDLFKSKIRKTDIL 723

Query: 610  ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            ARL G+ F ++L        +      +R   +       +  ++  SIG A+      +
Sbjct: 724  ARLGGDEFAVLLYHCPPEKGLDAAESLLRSIQSFRFTWQGKTFSIGVSIGIAAINVDATS 783

Query: 670  SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCLAVENSELYLVYH 725
            SS +L  A++A Y AK +G N V+ +++      +          +  A+E +   L   
Sbjct: 784  SSCILSAADVACYAAKDKGRNRVQVYQIGDRELAKQRGETQWAVRINQALEENWFSLYCQ 843

Query: 726  PIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
            PI+ L++        E L++    K   +S   F+  AE   ++ +I+ +++  +   + 
Sbjct: 844  PIVPLINVKGSPEHCEILLRLRDEKGQMVSPMAFIPAAERYNLMHSIDRWVIRTLFGYLQ 903

Query: 784  SWR------DQANMPPIFIL---------------INIASKDLLDNELCEGMQALISKTL 822
                      + +   +                  +N++   + D++  + +    +   
Sbjct: 904  DAPSFVFPKQENSKSNLPFSTLGKARRQNVNSLYAVNLSGASINDDQFIDFLHEQFTTYR 963

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  I    +E++ + N  ++   + +L+ +G    LDDFG+  S  +YL  +P D VK
Sbjct: 964  IPPEAICWEITETLAIANLSKAANFIRKLKDLGCCFALDDFGSGMSSFAYLKSLPVDFVK 1023

Query: 883  FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +G+ +         +A++ +I  +   +    IA+ +  E  +++L  +G DY Q  ++
Sbjct: 1024 IDGNFVKNIVDNPIDLAMVEAINRIGHVMGIQTIAEYVENEAVMEKLKELGVDYAQGYYL 1083

Query: 941  ASPLGFN 947
              P  F+
Sbjct: 1084 GKPQPFH 1090



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 15/194 (7%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF---S 402
           L+ I      + +   ++   I  AL   +      +   +    LA       +     
Sbjct: 321 LLGILTQTNLLRVLDPMEMSGIIDALHLAVEQRTSELKSAIASLSLANTQLESEMATRER 380

Query: 403 DGERQSLA---VLGSGDIVWDWD------IVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
             +R  L    V+ + D +   D           V        + G     + G   N L
Sbjct: 381 AEQRLRLLESCVVSANDAIVIMDGGFLDASDPTIVYVNEAFTQMTGYRPEEIVGKTPNCL 440

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                +D      I  +F+  RR  L+ E      D   +W+ +   P++N  G +  ++
Sbjct: 441 RG-PASDLAQIAKIRRAFL--RREPLRIELINYRKDGSIYWVELNSVPVNNEQGVLTHWV 497

Query: 514 GIANDITEQKKSLE 527
            +  D+T++K+  +
Sbjct: 498 SVQRDVTDRKQMEQ 511


>gi|290509546|ref|ZP_06548917.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Klebsiella sp. 1_1_55]
 gi|289778940|gb|EFD86937.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Klebsiella sp. 1_1_55]
          Length = 551

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 131/537 (24%), Positives = 235/537 (43%), Gaps = 15/537 (2%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++        ++         G  S  + G       Y             +  +  R 
Sbjct: 22  AIYMLSTDGTVISWNEGARRAKGYLSDEIIGCYFGLF-YSEAEQLSGVPAK-NLEIALRS 79

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G+ + E      D    W  + I  + +    +L +  I  DI+EQK   + I   A  D
Sbjct: 80  GQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYD 139

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR  F +R+  ++     +D  R  +  ID+DK+K+IND+ G  +GD +L  + 
Sbjct: 140 ALTGLPNRVEFFERVEKLIT---GNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVA 196

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + + L+  +++AR  G+ F  +     +  ++  FA  +    +        E+ ++A
Sbjct: 197 GAVLKTLQKEEMVARFGGDEFVAVKP-FADEGEVDAFAARLWHCFSGKQTFAATEVVLSA 255

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG + +       + +L N++LAMY AK    + +  +        R    +  D+   
Sbjct: 256 SIGISVYPEDGTDINTVLSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMAADIRRG 315

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y  I  + D  I G EAL++W HP+ G I    F+ IAEE   I  +  ++
Sbjct: 316 IHAGEFSLHYQAIRNIKDRRITGYEALLRWQHPQLGPIPPDVFIPIAEESGAIVPLGYWV 375

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++  +              + +NI+   L      E ++ ++ +T Y  S ++   +E
Sbjct: 376 LEQVCNE-----SLEKGLNRKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTE 430

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           +  + N + +  +L  L+K+GIS+ LDDFGT  S LS L    FD +K + S M    S 
Sbjct: 431 TAFIINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSMLRDFHFDVIKLDRSFMLDVESN 490

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  + +R+II +  +I T +IA+ +     ++ L   GCD +Q      P+    +
Sbjct: 491 PQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHL 547


>gi|260771163|ref|ZP_05880090.1| hypothetical protein VFA_004228 [Vibrio furnissii CIP 102972]
 gi|260613760|gb|EEX38952.1| hypothetical protein VFA_004228 [Vibrio furnissii CIP 102972]
 gi|315179231|gb|ADT86145.1| c-di-GMP phosphodiesterase A-related protein [Vibrio furnissii NCTC
           11218]
          Length = 659

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 135/548 (24%), Positives = 252/548 (45%), Gaps = 31/548 (5%)

Query: 427 RVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGY------RRGRL 479
            ++  P  A +LGL     + G   + L +I    +  F T +   +           R 
Sbjct: 130 IISANPSSARLLGLDDTSDLLGEDLSSL-FIDEKTKAAFSTPIGLLLSEAPLVCLTGPRC 188

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNL 538
            +E +V+        +    + +               D ++  K+       +   D L
Sbjct: 189 GFERKVQLNAGTTRVLSSNSQLIL------------IQDASQATKQLSATTQTDVHIDTL 236

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  ++      ++    ++ +DID +K IND LG  +GD V+  ++ R
Sbjct: 237 TGLYNRLGFTKRLEHLI-----QNDTPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVSSR 291

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  LL    +L  L G+ FG+IL    ++      A  +   I  P +L      +  SI
Sbjct: 292 LKRLLPPHAVLGHLGGDEFGLILPEPEHNRSAEMLAERIISLINQPFDLHHFSKRLACSI 351

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE 716
           G   +      +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++
Sbjct: 352 GSVCYPGDGSDARVLLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQ 411

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            + L + Y P +   D  I G EAL++W HP  G IS   F+ +AE+  +I+ +   ++ 
Sbjct: 412 QNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMR 471

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            +   +  W+ Q  + P  + INI+ +   + +L + ++ L+  T   P+ I    +ES 
Sbjct: 472 DVFATVKRWKQQ-GILPGRVAINISPEQFGNPQLIDYLEKLLRTTALDPNCITFELTESA 530

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EK 894
           VM + E +  +L  ++K+G SL++DDFGT  S L+YL   P D +K + + +T      K
Sbjct: 531 VMSDSEHTLQMLNAIKKLGFSLSIDDFGTGYSSLAYLARFPIDELKIDRAFITDIDTLPK 590

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ ++ +II + K++  T++A+ +  +     L+ + C  IQ  H   P   + + +L  
Sbjct: 591 QVTVIENIINLGKSLNLTVVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFS 650

Query: 955 ERFPLVKN 962
           +     K+
Sbjct: 651 QHRRHRKS 658


>gi|107101158|ref|ZP_01365076.1| hypothetical protein PaerPA_01002190 [Pseudomonas aeruginosa PACS2]
          Length = 685

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 224/436 (51%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++   ++  A  DNLT +PNR    DRL   +  +  DD  R  V+ +D+D +K +
Sbjct: 250 TSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDR-RFAVLFMDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD +L+ +  RI   ++  D +ARL G+ F +++         A  A  + K
Sbjct: 309 NDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVK 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  +   E+ ++ASIG A +     T  E++ NA+ AMYHAK +G N    F   +
Sbjct: 368 RISQPYQISRHEVRISASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++   +++ +  DL  A+E  +L L Y P +   +  ++G+EAL++W+HP+ G I+  +F
Sbjct: 428 NANAQEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L+   R +  W D        I +N+++       L + ++  
Sbjct: 488 LPLAEKTGLIVQIGEWVLDEACRQMRLWLD-GGHAEWNIAVNLSALQFAHAGLVDSVRNA 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS + L  +ES  M + + S ++L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LLRHSLEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +          AI+ +I+ + + +   I+A+ +  E   + LTR+GC+ +
Sbjct: 607 ASELKIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +L 
Sbjct: 667 QGFLLGRPMPAEQLLA 682


>gi|114563245|ref|YP_750758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334538|gb|ABI71920.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Shewanella frigidimarina NCIMB 400]
          Length = 912

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 134/620 (21%), Positives = 274/620 (44%), Gaps = 18/620 (2%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
                     + L +++         Q   +  +      +    +++ L      + + 
Sbjct: 283 LIEFAAVAGVLILLLSVWILQARRNNQALTIANINTANANMALNELKNNLEKNVLERTLQ 342

Query: 402 --SDGERQSLAVLGSGD--IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                 R    V    D  I +  D        +P +  ILGL    + G    +   + 
Sbjct: 343 LTISENRYRGLVESLEDEYIFYQHDTDGFVQYVSPSVTHILGLT---ITGFGEYYYKLLT 399

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            N ++   +     +        +E  +   +   H   +  RPM +  G+ +   GIA+
Sbjct: 400 DNPKNQLISGYIQRIINGEKLAPFEIEIFDTNGVIHTFEVLERPMYDDEGECIGCEGIAH 459

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T +K+  + +   +  D+LTG+ NR  F   L   + +   +      ++ +D+ ++K
Sbjct: 460 DVTSRKQQQDMLYQLSHYDDLTGLINRYFFKILLDENIQICLQNQQP-LALLFLDLTRFK 518

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G + GD +L     RI   L     ++R  G++F I L +   + +    A  +
Sbjct: 519 IINDNFGHSAGDYILQQAATRISTTLNGTFTVSRFGGDKFCIALPN-KAADEANAIATEL 577

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFR 696
            +        LE+ I +   +G + +      +  +L  A+ A+Y AK R  G    + +
Sbjct: 578 VEVFQQHFEFLEQTIILGCRVGISLFPEDGKDAEAILNQADSALYEAKKRPFGVAFCNKQ 637

Query: 697 VSSFRSDRVMIKEDLCLA-----VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +     R++I++ L  A     +E+ +L+ VY P+I L  + + G EAL++WDHP +G 
Sbjct: 638 QAIHNKRRLIIEQGLRKALAEPVIEHYQLFAVYQPLILLPSQGLGGFEALMRWDHPDFGL 697

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS +EF+ IAE   +I  ++ +ML+ + + ++ W +Q       + +N+++ +L+   L 
Sbjct: 698 ISPAEFIPIAENTGLIFELSRWMLKTVCQQLVKWHEQGFDFK-RVSVNLSALELMSINLA 756

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + + A+I+     P  +K   +E+ +M  PE+S  +L +L +  I + +DDFGT  S L+
Sbjct: 757 DDLLAVITDIGAEPKWLKFEITETALMAIPEQSIDILQKLIQADIHVAIDDFGTGYSSLA 816

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P   +K + S +     + +  A+++++I MA ++   + A+ +  +  +  L  
Sbjct: 817 YLKSLPATMLKIDQSFICNLIHSAEDQAVVKAVINMAHSLGKCVTAEGVELQDQLDFLIE 876

Query: 930 MGCDYIQDSHVASPLGFNSI 949
             CD  Q  + + P+  +  
Sbjct: 877 HHCDVAQGYYFSKPMNADDA 896


>gi|308186989|ref|YP_003931120.1| hypothetical protein Pvag_1481 [Pantoea vagans C9-1]
 gi|308057499|gb|ADO09671.1| Uncharacterized protein yciR [Pantoea vagans C9-1]
          Length = 661

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 134/624 (21%), Positives = 268/624 (42%), Gaps = 21/624 (3%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
            L         +     + + I     + G+ + +  +G  V Q   A    + G  S  
Sbjct: 43  ALPLTPGQAAMIRAMPVITSSINLTMTLQGIDVPMHFVGRKVNQASWAGTASAWGDTSAV 102

Query: 405 ER--------QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            R            V  +  ++   D   +            GL    + G    +  ++
Sbjct: 103 ARDLTLGLSFAEQVVSEANSVIVILDQRGNIQRFNRLSEEYTGLNEHEVIGRN-VFQLFM 161

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R  +  F        + E  V+    Q  ++       S S  + +  I   
Sbjct: 162 TKQEASQSRRNIAGFFR-DGNSYEVERWVKTKKGQRLFLFRNKFVHSGSGKNEIFLICSG 220

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++++ E +   A  D +TG+PNR +   +++  L+ S  D+     V+ +D+D +
Sbjct: 221 TDITEERRAQERLRVLANTDTVTGLPNRNAIHQQISLALERSEGDET---GVVYLDLDNF 277

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L +++  I   L     L RL G+ F  +L    +   +   +  
Sbjct: 278 KKVNDAYGHMFGDQLLQAVSLAILSCLGKDQTLGRLGGDEFV-VLAEHTSQAALEAMSSR 336

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           + + +  P  +   E+    SIG A           +++NA+ AMYHAK  G      F 
Sbjct: 337 ILERLRQPFRIGLIEVYSGCSIGIAFAPLHGDDRESLIRNADTAMYHAKENGRGKFCVFA 396

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    + + +  +L  A+E   L + Y P I   D ++   EAL++W+ P+ G +S 
Sbjct: 397 AEMNQRVFEYLWLDTNLRKALELDHLLVHYQPKID-SDGQVRSAEALVRWNSPERGLVSP 455

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+  AEE  +I  +  +++  + + II+WR+Q     + + +N++++ L+D  +   +
Sbjct: 456 ADFIPYAEESGLIVPLGRWVMLNVLKQIIAWREQGIF--LRVAVNVSARQLIDQSIYTDL 513

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  + +   +   I +  +ES ++ N   +  L+ + +++G  + LDDFGT  S LS L 
Sbjct: 514 KQALHEANITDCPIDIELTESCLIENETEALKLMKQFQELGAQVHLDDFGTGYSSLSQLA 573

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P + +K + S +          +++R+I+ +AK ++  +IA+ I    + K + + G 
Sbjct: 574 RVPINAIKLDQSFIRDINKQPVSQSLVRAIVAVAKALDLQVIAEGIETPDEEKFVLKSGV 633

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q  + A P+        L + 
Sbjct: 634 DGRQGYYYAKPMPAEQFGHWLAKH 657


>gi|146342000|ref|YP_001207048.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146194806|emb|CAL78831.1| putative signaling protein containing multidomains (CHASE/GGDE/EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 837

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 119/490 (24%), Positives = 230/490 (46%), Gaps = 19/490 (3%)

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-----SLEGI 529
           R G   + F+   A         R   +  +      ++ +   ++ +       +   +
Sbjct: 310 RIGDADWVFQAAPAGGGLMASHNRALALYAAGMATTIFLAVYLALSSRNAQQLALANRRV 369

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+ NR  FL+ +  I      D N R TV ++D+D++K +ND LG   GD
Sbjct: 370 LELAQTDALTGLANRAFFLEEMERI----NDDKNGRFTVFLLDLDRFKNVNDSLGHGAGD 425

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINLL 648
           ++L+ + +R+   L+  D+LARL G+ F +I    ++      + A  + + IA P  + 
Sbjct: 426 ELLMQVAQRLRSQLRDEDVLARLGGDEFAVIQAGFDDQRTAAIELAQRITRLIAEPFQIG 485

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
            + + +  SIG +           +LK A+LA+Y +K  G +    +             
Sbjct: 486 GQRVEIGTSIGISLAPQHGRDQEHLLKKADLALYRSKSAGRSCYTLYDDVMSAELEARNT 545

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ DL  A+   +  + Y P       E  G+EAL++W HP  G +   +F+ +AE   +
Sbjct: 546 LEGDLRDAIAQCQFEVHYQPFYDAETRERRGVEALVRWRHPVKGLVPPDKFIPLAESTGL 605

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++ R+  D  +W D      + + +N++       EL + +Q+ +S++   P 
Sbjct: 606 IVPLGEWIIGRVCDDATAWPD-----DVKVAVNLSPVQFKQAELFDVIQSALSRSGLDPK 660

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +ESV++     +   + RL+ +GISL LDDFGT  S L  L   PF+ +K + S
Sbjct: 661 RLEIEITESVLLERAAENESFIDRLKGLGISLALDDFGTGYSSLRSLTAFPFNKIKIDKS 720

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +   +  ++  A++ S++ +A+ +   I A+ +  E  +  L  +G ++ Q   +  P+
Sbjct: 721 FVANLSVRDESAAVISSVVTLARGLGIHITAEGVETEEQLAHLCELGVNFAQGYLLGRPM 780

Query: 945 GFNSILKLLK 954
               + K L+
Sbjct: 781 PVEQLEKHLE 790


>gi|86750361|ref|YP_486857.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86573389|gb|ABD07946.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 673

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/633 (21%), Positives = 266/633 (42%), Gaps = 37/633 (5%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRL--DNDIIQPALVGGLVLIVIL-IGFTVIQHVLATG 394
              + A  +     +   + +   L   ++ +   +   +V++ IL +  TV   V +  
Sbjct: 46  RGWVIAACVAAGCCLASALTVGLLLAVPSEPVVRDVALAIVIVTILGMTVTVAMAVWSGA 105

Query: 395 YFSQGIFSDGERQSLAVLGS----GDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGP 448
             +  + S    + + +             +               I  +  G       
Sbjct: 106 KGTNNVRSALAERVMVLDAIVQKDSHGFCLFSPDGRLEAWNEAFLDIYAIPPGQPLAGAT 165

Query: 449 IRNWLPYIHI-----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +   +  + +      D +    I  +  G     +  E     +D     + +  RP+ 
Sbjct: 166 LAELVEILRVCGNQLTDIEQLSEIKAASAGGGPSEIVVEL----SDG--RHIRLEFRPLP 219

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N       +I    D+T+ K + +        D  TG+PNR +F  R+   L ++  + +
Sbjct: 220 NG-----GWIAKQADVTDYKMAEQRFAYVTLHDIATGLPNRAAFNQRIGQSLAVA-RERH 273

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ + ID++K+INDV G +VGD VL  +   + E   +   LAR  G+ F I+   
Sbjct: 274 ASFAVIRLGIDRFKEINDVFGQSVGDAVLAKMAALLTETCHWG-FLARPGGDEFSIVTQP 332

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +  +  + +    + +   +  ++    I V ++ G + +      +  ++ +A++A+Y 
Sbjct: 333 DQAADALQEICSQVLRLCDVEFDIDGHAIRVGSTAGVSIYPRDGDDAETLIAHADVALYR 392

Query: 684 AK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK   RG   V    +     ++  ++ +L LA++N E  L Y P       EIVG EAL
Sbjct: 393 AKNERRGSVCVFEPAMDLQIREKRALQRELALALQNDEFELHYQPQATTK-GEIVGFEAL 451

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S + F+ +AEE  +I AI+ ++L    R+  SW       P+ I +N++
Sbjct: 452 LRWRHPVRGMVSPAAFIPLAEETGLIGAIDEWVLRSACREAASWPK-----PLAIAVNLS 506

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D    ++   +  ++ +T   P R+++  +E V++ +   +  +L R++  G+ + +D
Sbjct: 507 PLDFGRLDVPALILQVLLETGLDPKRLEVEITEGVLIDDFSGAIGILRRIKNCGVRVAMD 566

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S LSYL   PFD +K + +            AI+ +I+ +A  +   +IA+ + 
Sbjct: 567 DFGAGYSSLSYLQSFPFDKIKIDQAFTRKLEINPDSAAIVEAILSLAHRLNLPVIAEGVE 626

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            E  +  L  +GC  +Q   +  P        L
Sbjct: 627 TESQLAFLASVGCGEVQGYLIGKPGPIAQYRHL 659


>gi|325982236|ref|YP_004294638.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
 gi|325531755|gb|ADZ26476.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
          Length = 546

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/500 (24%), Positives = 236/500 (47%), Gaps = 13/500 (2%)

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            YI   D   F    +        +     R+        W+   I  + N       YI
Sbjct: 50  SYIQPEDIALFWDAQEKARKT-GEKQTLICRILRQLMLPIWVDCYIHRLLNDQ-----YI 103

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            IA D T  K+S   +   +  D LTG+P +    DR+   +  +   +    +++VI +
Sbjct: 104 VIAFDATHWKESETRLAYFSTHDTLTGLPGKVLLDDRIAMNIQTAQR-EKSFLSLVVISL 162

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D Y+KIND+LG ++GD+++ S+  R+   ++  D +AR+S + F +I+I       I   
Sbjct: 163 DGYRKINDLLGHSIGDELIRSVAERLQNCVRRSDTVARVSDDEFSMIMIGVG-QNNIEMI 221

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  ++     + E  + ++AS+G + +     ++S + ++AE+AMY AK  G NH +
Sbjct: 222 ARKILTALQQSFRISEHTLHISASLGISLYPEHGGSASHLYRHAEVAMYRAKTLGKNHWK 281

Query: 694 SF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  +V       + ++  +   +EN E  L Y PI      ++ G EAL++W +P  G 
Sbjct: 282 IYSAQVDDSERSDLSLESAMYRGIENGEFMLHYQPIFCAQTGQLRGAEALMRWKNPNQGF 341

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   +F+ +AE   +IK +  + L         W+D       +I +N++ +  +  +  
Sbjct: 342 IPPIKFIPLAENSGLIKILGAWALRSACYQAKQWQDAGLK-DFYISVNVSPRQFVQEDFL 400

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  ++ ++   P  + L  +E V+M NP+RS  +L +L   G+ + +DDFGT  S L+
Sbjct: 401 EMINGVLRESGLLPQNLMLEITEGVLMDNPQRSGEILTQLHVAGVKIAIDDFGTGYSSLA 460

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   P   +K + S +    +  + +AI+ +I+ +A+ +   ++A+ +  +  +  L +
Sbjct: 461 YLKKFPLSVLKIDKSFVDDVINCAEDMAIIGTILSLAEGLNLMVVAEGVENDAQLGFLKQ 520

Query: 930 MGCDYIQDSHVASPLGFNSI 949
            GC+ +Q      P+     
Sbjct: 521 EGCNLVQGYLTGKPVHSEDF 540


>gi|77458750|ref|YP_348256.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382753|gb|ABA74266.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 693

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 207/440 (47%), Gaps = 7/440 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D LTG+PNR    DR+   +            +M ID+D +K +ND  G
Sbjct: 255 ANRELTQLALHDPLTGLPNRMLLDDRINQAMKKVNEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L  +  R+ E L+  D LAR+ G+ F  +L+           A      IA  
Sbjct: 314 HHMGDQLLREVAVRLREDLRSLDTLARIGGDEFV-LLVRLAEPNDALGLAARQVGLIAQS 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ ++AS+G A +  +  ++ E+L NA+ AMYHAK  G N    F   ++S   
Sbjct: 373 FRVAEHDLQISASVGIALYPGNGESAQELLMNADAAMYHAKGGGKNGYSFFDVSMNSNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL  A+E+SE  L Y P     D   VG EAL++W+HP  G +    F+ +AE
Sbjct: 433 KQLQLLQDLRAALEHSEFCLHYQPKFHAADGHPVGAEALLRWEHPVHGMLMPDTFIDLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W          I +N+++       L   +   ++   
Sbjct: 493 KTGLIIPIGEWVLNEACRQMREWY-VLGHTEWRIAVNLSALQFCHAGLVRSVAKALATHH 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L  L  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANSLTLEITETTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  +     LT++GCD +Q   +
Sbjct: 612 IDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETDSQQDFLTQLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLKERFPLV 960
             P+  +  L+ +    PL 
Sbjct: 672 GHPMPADRFLQNVARGKPLA 691


>gi|300705131|ref|YP_003746734.1| integral membrane sensor protein; ggdef, mhyt and eal domains
           [Ralstonia solanacearum CFBP2957]
 gi|299072795|emb|CBJ44150.1| putative integral membrane sensor protein; putative GGDEF, MHYT and
           EAL domains [Ralstonia solanacearum CFBP2957]
          Length = 692

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 212/436 (48%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   K+ + +   A  D+LT + NR    DRL   +  ++ +      +M +D+D +K +
Sbjct: 250 TSLAKANKELAYLALHDSLTKLSNRLLLEDRLEQAIQSASRNRG-SFALMFLDLDGFKAV 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G   GD +L  + RRI   ++  D +AR+ G+ F  +L S          A A+  
Sbjct: 309 NDVYGHHAGDLLLTDVARRIVACVRLQDTVARVGGDEFV-VLASVGEPADAGTLADALLA 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P  +   E+ V+ SIG A +     +  ++L NA+ AMYHAK  G +    F  S 
Sbjct: 368 AAREPFLVDGHELRVSTSIGIALYPGDGASQHDLLTNADAAMYHAKGTGRDTYCFFEASM 427

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++ + +DL  A+E  EL L Y P     D  +VG+EAL++W HP  G +    F
Sbjct: 428 NANVHKQLQLVQDLRQALERRELVLHYQPKFSAPDGPVVGVEALVRWQHPSRGLVPPDAF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  ++L+   R +  WR +       I +N+++       L + ++  
Sbjct: 488 VPLAEKTGLIVPLGAWVLDEACRQMAQWRRE-GRTSWSIAVNLSAVQFAHATLLDTVRDT 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LARHALEPPCLTLEITESTAMRDADASLRILQQLHAMGVRISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +       +  AI+ +++ + + +   I+A+ +  E     LTR+GC  +
Sbjct: 607 ASELKIDRGFVRDLAHDTEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHTL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q + +  P+   ++ +
Sbjct: 667 QGNLLGRPMTAQALAE 682


>gi|323529633|ref|YP_004231785.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323386635|gb|ADX58725.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 647

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 226/445 (50%), Gaps = 5/445 (1%)

Query: 515 IANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           +   + E+   +E      A  D LT +PNR++F D LTT L  + T D  R  +M++D+
Sbjct: 180 VMRRMRERVTRVEKDLEYLASTDPLTDLPNRRAFYDELTTRLHKANTADK-RVALMMVDL 238

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND LG   GD++L  +   +  +++  D+++R+ G+ F +++  + + ++    
Sbjct: 239 DNFKIVNDTLGHGAGDELLKQVAEALRNVVRPSDLVSRIGGDEFAVVIGPDASRVRARAT 298

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + ++++ P  L   +  VTAS+GF+ +    +  +E++ NA++A+Y AK RG +   
Sbjct: 299 AGRIARNLSRPFILHGSDSAVTASVGFSVYPEDTVEMAELVSNADIALYSAKSRGKSIAV 358

Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F+         R  I+ +L  AV+   L +VY P    +   ++G EAL++W HP  G 
Sbjct: 359 EFQSEMTAEAQRRARIEAELRKAVDQDGLDIVYQPQFDCLSGRLLGAEALVRWTHPSEGP 418

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS +EF+ IAE   +I  +  ++L R  RD  +W        + + +NI+++ L      
Sbjct: 419 ISPAEFVPIAENSDLIVLLGRWVLWRACRDAANWNA-GRSAAVHVAVNISARQLRAEGFT 477

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   + K+    S ++L  +ES +M N       +  LR  G+ L+LDDFGT  S LS
Sbjct: 478 HEVCNALQKSGLPASLLELELTESQLMSNMSVGIQAMQELRAAGVRLSLDDFGTGYSSLS 537

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           YL   P  ++K + S +         I+ +II MA +    ++A+ +     ++ L+   
Sbjct: 538 YLQSFPVHSIKIDRSFICPLPNGGQPIVTAIISMAHSFGLLVVAEGVEYPAQLEWLSDAH 597

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CD +Q      P+  + +L +++  
Sbjct: 598 CDVVQGFLTGHPMSLDQLLAIIRAE 622


>gi|148976697|ref|ZP_01813384.1| c-di-GMP phosphodiesterase A-related protein [Vibrionales bacterium
           SWAT-3]
 gi|145964048|gb|EDK29306.1| c-di-GMP phosphodiesterase A-related protein [Vibrionales bacterium
           SWAT-3]
          Length = 679

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/532 (25%), Positives = 240/532 (45%), Gaps = 21/532 (3%)

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            P  A +LG  S +          +I    +  F   L S +            +     
Sbjct: 156 NPAAARLLGFNSTTELIGEELGRLFIDEQTKTVFNNSLSSIISESG--------LVCLTG 207

Query: 491 QFHWMIIRIRPMSNSN---GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                  +++   +S    G   + + I +     K+       +A+ D LT + NR  F
Sbjct: 208 ARCGFERKVQLHIDSTAILGSSTQLVLIQDAQETTKQYTPANSEDAYIDALTKLYNRVGF 267

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             RL   +      ++    +M +DID +K IND LG  +GD V+  +  R+  LL    
Sbjct: 268 TKRLEQFI-----HNDTPVVMMYLDIDNFKNINDSLGHHIGDKVIKEVASRLKRLLPRQA 322

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++  L G+ FGIIL    +       A  +   I  P +L      +  SIG   +    
Sbjct: 323 VVGHLGGDEFGIILPEPEHPRTAETLAEKIISLINQPFDLHHFSKRLACSIGSVRFPQDG 382

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
             +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y 
Sbjct: 383 TDARILLQNADTAMYEAKDRGRNRLIKFNEQMNKEARMRLWLEIELQKALQQNGLEVWYQ 442

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +   D  I G EAL++W HP  G IS + F+ +AE   +I+ +   ++  +   +  W
Sbjct: 443 PKVNARDFTINGAEALVRWKHPVEGYISPAAFIPVAERAGLIEQLGRVVMREVFATVKRW 502

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           + Q  +    + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E + 
Sbjct: 503 KMQGILLG-RVAINLSPEQFGNPKLIDYMEKLLRSTELDPSAITFELTESAVMSDSEHTV 561

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
            +L  ++K+G +L++DDFGT  S LSYL   P D +K + + ++      K+I ++ +II
Sbjct: 562 QMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFISDIDTLPKQITVIENII 621

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + K+++ T++A+ +        L+ + C  IQ  H   P     + +L  +
Sbjct: 622 NLGKSLDLTVVAEGVETSEQATLLSNLNCSSIQGFHFYRPQPKQDVEELFAQ 673


>gi|157376517|ref|YP_001475117.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
 gi|157318891|gb|ABV37989.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
          Length = 677

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 112/430 (26%), Positives = 207/430 (48%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +    + +  ++ ID+D++K IND L
Sbjct: 239 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKH-QFCMLFIDLDRFKNINDSL 297

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     +ARL G+ F I+     +  + ADF   +   +  
Sbjct: 298 GHAIGDQFLARIARVLERVVGDNGTVARLGGDEFVILADEIRSPDQAADFVDKLLLQLNT 357

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E  I   AS+G + +    +++ +++++A++AMY AK  G N    F+       
Sbjct: 358 PMQLNEHTIHPAASVGISIYPDDGMSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 417

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N E  L Y P   +   ++V  EALI+W       IS   F+ +A
Sbjct: 418 AVRLRTEASLHDALKNGEFVLHYQPKFDIKTGKVVACEALIRWQ-KDGRLISPMSFIPVA 476

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E   + I  W+ +     + I +N+AS+   D  L   ++ L  + 
Sbjct: 477 EETGIIIPIGRWVIEEACKTIRKWKKEY-NFALPIAVNVASQQFADASLVPDIKQLALRY 535

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 536 QISPDLLEIEITETSLMNDIELAISKLQQLKSTGFGIAVDDFGTGYSSLSYLRHLPITTM 595

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T       AI  +I+ + + +   I+A+ I     +  L    C   Q  + +
Sbjct: 596 KIDRCFVTDL-PNESAIASTILMLGQQLNLNIVAEGIETREQLDWLNSNNCQIGQGFYFS 654

Query: 942 SPLGFNSILK 951
            P+       
Sbjct: 655 KPVTQKEFED 664


>gi|92118971|ref|YP_578700.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91801865|gb|ABE64240.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
          Length = 781

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 135/696 (19%), Positives = 281/696 (40%), Gaps = 41/696 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
              RW  +           +     ++        +         +   T ++     + 
Sbjct: 93  EAARWETRYQIGAVLYAIVLGAWCAIALLMTDDAVAHM-----ICISVTTGYVAAGAGRA 147

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           Y R  +     IL+    +   M +    +   +  AL+  L  + +    T +Q +   
Sbjct: 148 YGRPWIF-HVQILLTCGPMAGAMVLHG--NPYYVGMALLTVLYFLGLERITTRLQEIFVR 204

Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              ++   +    +   A+      +  +               ++ L + S        
Sbjct: 205 ALIAREREAAIAGQFDTALNNMPHGLCMFGADGRLGVMNYRFGEMMHL-ADSFVHRRVGA 263

Query: 453 LPYI---------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              I            +     + +++           + R R        +    +PM 
Sbjct: 264 ADVIAACVAVGTMSPENGSTIISEIENSQAGAIVTADLD-RERGRA-----LSWTFQPMV 317

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                    + +  DITE++K+   I   A  D+LT +PNR SF D +  +L ++ ++  
Sbjct: 318 GG-----GTVVLVEDITERRKAEAKISHLARFDSLTELPNRLSFRDEIERLLAIANSESR 372

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   ++ ID+D++K+IND LG   GD +L  +  R+  +L+  D +AR  G+ F +   +
Sbjct: 373 LS-ALLFIDLDQFKQINDTLGHPCGDRLLCIVADRLRGMLRPDDFVARFGGDEFVVFQQN 431

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++ + A  +  + + +     +    + + ASIG A  +   +T+  +LK A++A+Y 
Sbjct: 432 IQSAEEAAALSRRVVERLTERYEIDRHLVEIGASIGIALTSP-GVTADNLLKQADMALYR 490

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      FR            ++ DL  A+   E  L Y P++ L    I   EAL
Sbjct: 491 AKAGGRGTFCFFRNEMAEIVEARRVLELDLRKALAKEEFELFYQPLVNLKSGRITTCEAL 550

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G +S  + + +AEE+ +I  +  ++L +   + ++W D      + + +N +
Sbjct: 551 LRWNHPTRGMVSPIDIIPVAEEIGLIVDLGRWILRKACMECMTWPDA-----VSVAVNFS 605

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S+     ++   ++  +  +     R+++  +ES ++ N + +   L +LR  G+ ++LD
Sbjct: 606 SQQFHQRDVLSEVRYALEVSGLPAHRLEIEITESSLLRNTQWTHDALTQLRSAGVRISLD 665

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYG 920
           DFGT  S LSYL   P   VK + S + G    R   +LR +  ++ ++  +++ + I  
Sbjct: 666 DFGTGYSSLSYLHNFPLQKVKIDRSFLEGIDADRPLTLLRGVARLSADLGMSVVVEGIET 725

Query: 921 EIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKE 955
              ++ ++  G     Q    + P+    I +LL  
Sbjct: 726 NEQLELISADGTVTEAQGYLFSRPVSAARIRQLLDA 761


>gi|24372790|ref|NP_716832.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24346875|gb|AAN54277.1|AE015564_8 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 684

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/431 (28%), Positives = 214/431 (49%), Gaps = 6/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  S         +M ID+D++K IND L
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKR-SFALMFIDLDRFKNINDSL 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     ++RL G+ F I+  S ++  + ADF   +   + +
Sbjct: 299 GHALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNV 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L E  I   ASIG + +     ++ +++++A++AMY AK  G N    F+       
Sbjct: 359 PIQLNEHAIHPAASIGISIYPEDGSSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 418

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + L   +I G EALI+W       IS   F+ +A
Sbjct: 419 AVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQ-KDGRLISPMSFIPVA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  R +  W+ + N   I I IN+AS+   D  L   ++ +  + 
Sbjct: 478 EETGIIIPIGRWVIEQSCRVLREWQKKYNY-AIPIAINVASQQFADASLVSDIKQMALRY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 537 QIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++       AI  +I+ + K +  TI+A+ I  E+ +  L    C   Q  + +
Sbjct: 597 KIDRCFVSDL-PGDSAIASTILMLGKQLNLTIVAEGIENELQLDWLKSNECQIGQGFYFS 655

Query: 942 SPLGFNSILKL 952
            PL       L
Sbjct: 656 QPLPQADFEAL 666


>gi|220906648|ref|YP_002481959.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219863259|gb|ACL43598.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Cyanothece sp. PCC 7425]
          Length = 792

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 217/441 (49%), Gaps = 6/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++   ++  + +D LT +PNR    DRL   L         +  V+ +D+D++K IN
Sbjct: 335 ERQQANAQLVTVSLRDALTSLPNRTLLFDRLEHALQRYQRHPQQQFAVLFLDMDRFKSIN 394

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL+ +  R+ + ++  D +ARL G+ F I+L    N       A  ++  
Sbjct: 395 DSLGHTAGDQVLLEMAHRLSQSVREEDTVARLGGDEFVILLEEVMNLQDALHCAQRIQDI 454

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A+P  L    +++ ASIG A   +   T  E+L++A++AMY AK  G    + F     
Sbjct: 455 LAVPFELNGTVVSLDASIGVALADARYHTPEELLRDADIAMYEAKAAGRGGYQVFAPQMH 514

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++ +  ++DL LA+   +  +VY PI+ L++  ++G EALI+W HP+   I   EF+
Sbjct: 515 EQAKLRLQKEQDLRLALRKEQFQVVYQPIVNLLNHALLGFEALIRWQHPQGVQIPVPEFL 574

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IA++L ++  +  ++L+     +  W+        P+ + +N++S       L   +  
Sbjct: 575 TIADQLGLLVKLEWWVLQTACEQLAQWQSLPGLAGRPLSVSVNVSSTLFAQPNLVPEVAR 634

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +    P  +KL  +E V+  N + +      L+ +G+ L +DDFGT  S L  L   
Sbjct: 635 LIQQFKLPPQGLKLEITEGVIGANADVALENGQALQSLGVQLHIDDFGTGYSSLKRLHQF 694

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +    +  +   I+R+I+ +A  +   +IA+ I  E     L  + C  
Sbjct: 695 PVHALKIDRSFVRHLDQSSENREIVRAIVSLANTLGIDVIAEGIETEQQCHYLQTLACQQ 754

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A PL    + ++L +
Sbjct: 755 GQGYWFAPPLTTAEVEQMLLQ 775



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D  +  V  +     I  +A+  +    +     IH  DR  F   + + +         
Sbjct: 53  DGSQGFVYISAGCEEIYEIAADQIVQNAQLVWSLIHPEDRREFEEAMTAALICLTPWWN- 111

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           E R+     Q  W+   ++P   ++G I+   G+  DI+++K+  E     A Q
Sbjct: 112 EHRLITPSGQLKWLRFSLQPKLQADGTIV-CDGMILDISDRKR-QESERKQAEQ 163


>gi|126649855|ref|ZP_01722091.1| sensory box/GGDEF family protein [Bacillus sp. B14905]
 gi|126593574|gb|EAZ87519.1| sensory box/GGDEF family protein [Bacillus sp. B14905]
          Length = 668

 Score =  460 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 124/539 (23%), Positives = 241/539 (44%), Gaps = 14/539 (2%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR- 476
           V   D+    +     + + L      + G  R+    +       F+ +    +     
Sbjct: 134 VLTVDLQGRIIHQNMAVTSALSREQQCLIG--RDIFSLLESKYMKEFKLLFAKTIEGSAF 191

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G  +  F+ +    +  ++          NG+++       D        E     A  D
Sbjct: 192 GMPKCLFKNQLLSKEPFYLRTHPTYY---NGEVIGVHLFVKDANSFMNDHEAFYYLALMD 248

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTGI NR++F +     L+     ++ +  ++++DID++KK N+ LG + GD+++   +
Sbjct: 249 ELTGIWNRKAFKEHWLHHLND-KKQEHKQAALILVDIDRFKKFNESLGESKGDELMRMFS 307

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +R+ EL      L R + + F  +L       KI   A A+ + +  P  +  +E  ++ 
Sbjct: 308 QRLNELCYSKCALFRYNSDEFIFVLKDAT-IQKIEHTANAILEVLKQPFMIEGQEYFISV 366

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG +   +       +++ A+ A++  K  G +H   +R            ++  L  A
Sbjct: 367 SIGISLSPADGKDLETLVRKADKALFSVKEHGRSHYRYYREDMTAIFPNEALMEAHLRRA 426

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E +EL L   P + L +  I   EAL++W++ K+G +S ++F+ IAE   +I  I  ++
Sbjct: 427 IEFNELSLHLQPQMDLTNNSINSFEALLRWNNRKFGFVSPAQFIPIAEASGLIIEIGDWI 486

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++ + R    W+ +    P+ I +NI+ K          ++A + K    P  +++  +E
Sbjct: 487 IDEVCRHQNEWQSK-GYRPVRIAVNISPKQFRKENFARKIKAALKKYEVPPELLEVEITE 545

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S  M N   +  +L  L+++G+ +++DDFGT  S LSYL   P D +K + S +      
Sbjct: 546 SS-MTNVHETFSILTELKQLGVYVSVDDFGTGYSSLSYLKRYPIDIIKIDQSFIRDIAKD 604

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +K  AI+++II M+ N+   +IA+ I     +  L R  C   Q      PL   +I++
Sbjct: 605 DKNEAIIKAIISMSHNLGLEVIAEGIEEPTQVDFLKRHHCQKGQGYLYNKPLPVETIVQ 663


>gi|71909057|ref|YP_286644.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
 gi|71848678|gb|AAZ48174.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Dechloromonas aromatica RCB]
          Length = 1094

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 206/441 (46%), Gaps = 7/441 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+ +    +   A  D LTG+PNR  F  RL   +  +A   +    ++ ID+D++K++N
Sbjct: 646  ERNRIEAKLKYQASFDALTGLPNRSLFYIRLRDEMLRAARTGHG-GALLFIDLDRFKEVN 704

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG   GD +LV    RI   ++  D++ARL G+ F ++L        +   A A+  +
Sbjct: 705  DSLGHESGDSLLVEAAERIRAQVRASDLVARLGGDEFVVVLPDVRAPEHLGLLAQAIVDA 764

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            + +P  L   +  V+AS+G A +      +  +L  A+ AMY AK  G N    F  S  
Sbjct: 765  LVVPFVLDGHQAYVSASVGIACYPQDAEDADILLSCADKAMYVAKELGRNGFCFFTESMQ 824

Query: 701  --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 R+ +  DL  A+ + +L L Y PI+ +    +V  EAL++W HP+ G +   +F+
Sbjct: 825  TSADYRLKLSHDLRSALADGQLLLHYQPIVEVESGRVVKAEALLRWRHPQRGMVPPDQFI 884

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQ--ANMPPIFILINIASKDLLDNELCEGMQA 816
             +AEE  +I AI  ++ ++ A     W  +  A      I +N++ +  + +    G   
Sbjct: 885  HLAEETGLIHAIGDWVFQQAALTARDWAARMPAGAADCQISVNMSPRQFVKDGSEAGWLD 944

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +      P  I L  +E +++         L   R  GI ++LDDFGT  S ++YL   
Sbjct: 945  YLKSIGLDPRYIGLEITEGLLLDERLHVAERLAAFRASGIQISLDDFGTGYSAMAYLKKY 1004

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K + + +          AI +++I MA  +    +A+ +        L   GCD 
Sbjct: 1005 PIDYLKIDRTFVRDLVSDSGDRAIAQAMIFMASQLGLKTVAEGVETAEQRDLLQSFGCDL 1064

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            IQ  + A PL  +  +  L++
Sbjct: 1065 IQGYYYARPLPRDEFMAYLEQ 1085



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 95/340 (27%), Gaps = 30/340 (8%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII--- 267
           ++ + ++++     +      ++  F       +     LL W    +  ++   I    
Sbjct: 24  VLRQQAVMLYRSFRSAAFGTVLASTFLVFVLWPHFSHATLLAWLIGMQAIVAGRAIQAHR 83

Query: 268 ---FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
              FL       R HA + + ++  +         +F +       A + L  ++     
Sbjct: 84  LKGFLASAPGRERLHAWIRHFSYGLLLAGLHWGGTAFLFMSPENVSAAMFLLLVLTGVAA 143

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI--VILI 382
                       AV  I A +LI +              +  +   L+           +
Sbjct: 144 SASILHTSLPATAVPFI-ALVLIPVAVRMYAFENVGSYASVAVLGFLLLLWAAARRGHRM 202

Query: 383 GFTVIQHVLATGYFSQGIFSDG-----------ERQSLAVLGSGDIVWDWDIVRDRVT-- 429
            +  I   L        I +D            +          D +   D+  D     
Sbjct: 203 LWNSIAVGLDNERLQHAIMADKLAAEGALRAAAQEYQEVFAHITDGLILIDVRDDASFRV 262

Query: 430 --TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVR 486
                 +A I+G+   S  G    +   +               V        + EFR  
Sbjct: 263 AGANAAMAQIVGVPVESAIGK--TFGELVEPELASQAEANYRRCVDLGDPIHYESEFR-- 318

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                       + PMS+  G + R IGI  DITE+K+  
Sbjct: 319 -RSGVVRHFDSMLVPMSDGAGRVFRVIGIHRDITERKQLE 357



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 7/143 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +         + +        V  S +++  +D    RV + P    +LG+  G   G
Sbjct: 348 RDITERKQLEVALAAREREFRTLVENSPEVIIRYDRDLRRVFSNPAFDQLLGVLPGETRG 407

Query: 448 PIRN--WLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
              +  W P       D F  IL       R      EFR          +  R+ P   
Sbjct: 408 KEVSCCWAPR--NISVDEFEAILQRVFASCRPEECLLEFRDER--GSLVCLNYRLVPEFG 463

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
            +G +   +G  ++++  K+   
Sbjct: 464 LDGQVESVLGFGHNVSALKRQEA 486


>gi|146342387|ref|YP_001207435.1| signaling protein [Bradyrhizobium sp. ORS278]
 gi|146195193|emb|CAL79218.1| Putative signaling protein containing CHASE2/PAS/GGDEF/EAL domains
           [Bradyrhizobium sp. ORS278]
          Length = 922

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 146/667 (21%), Positives = 271/667 (40%), Gaps = 28/667 (4%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
                      T            L      ++     +  A   +    ++ I      
Sbjct: 258 ATAAESIIQDRTLLKTSTVATLGALLLIVLAMFVSWPRFSAARRCVL---IVLIGMGIEA 314

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +A+       ++  + +  + L+  L+   + +                 R     +  G
Sbjct: 315 LALVLHHSYALVLDSSLLQIALVTYLVATALDEIDFRGLLRHVA----ESRFERIAMSIG 370

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-------RDNFRTIL 468
           D +   D  +      P    I G ++  + G        +H  D              L
Sbjct: 371 DGLVCTDQHKRITVWNPGAVAIFGYSAEEIIGQP---FARLHAKDNGQTDDLFPLQEAAL 427

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            + +      ++++ R    D +   +         ++G  L Y  I  DI+ +K+    
Sbjct: 428 PATLLPGGAMVEFDGR--RKDGEVFPVEASFSAWQGADG--LHYGVILRDISLRKREAAR 483

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+ NR +        +  +A   + +  ++VI +D ++ IND+LG   G
Sbjct: 484 IQYLADHDTLTGLINRNTLQTD-LAAMIDAADAASDQVVLLVIGLDAFQHINDMLGHTYG 542

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VL +   R+G  +     +ARLSG+ F + ++S      +A+ A  +      P++  
Sbjct: 543 DSVLRAAAERLGAEIGNMGRVARLSGDEFAVAILSSAIGGTVAELAQLLAGLFDTPLDAD 602

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVM 706
            R+  V  S+G A       T+ E+L NA LA+  AK   RG + +    +      R+ 
Sbjct: 603 GRQQRVRVSLGVAVHPVGGQTADELLSNAHLALCRAKTDERGSHVIFESAIRCELERRLT 662

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ +L LAVE SE  L Y P + L+   +VG EALI+W HP  G +   EF+ +     +
Sbjct: 663 LEAELALAVERSEFELFYQPQVDLLSGRVVGAEALIRWRHPTRGLVPPGEFIPVVNTSPL 722

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            +A+  +++    R    W+   +   I + +N++       +L   +  L++ T  SP+
Sbjct: 723 SEAVATWVMATACRQARQWQLAGHE--IRMGVNLSPSQFQAGDLAAFVGKLLTVTELSPA 780

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +E +++ +  R      RL+ +G+SL  DDFGT  + LSYL   P D +K + S
Sbjct: 781 LLELEVTEDILLHDEPRVLHTFNRLQALGVSLVFDDFGTGYASLSYLKKFPLDGLKIDRS 840

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    +     AI+ S + ++K +   +IA+ I  E   + L R+GC+  Q  H   P+
Sbjct: 841 FVQDVLTRTDDAAIVGSTVSLSKQLGLAVIAEGIENEATAEFLLRLGCEQGQGYHFGKPM 900

Query: 945 GFNSILK 951
                 +
Sbjct: 901 PAADFER 907


>gi|206562440|ref|YP_002233203.1| RNase II stability modulator [Burkholderia cenocepacia J2315]
 gi|198038480|emb|CAR54438.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 667

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 117/545 (21%), Positives = 237/545 (43%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFA- 177

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                  E  +   +    +        S S  D    I    DITE++ + + +   A 
Sbjct: 178 SNQSFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQYLICSGIDITEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   +   +     +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDVLTGLPNRHAISERIHAAIAAESEQTRGQVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 298 VSAIISGCLPSGATLARLGGDEFLVLFEQGTRP-LLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++ G+EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDIATGDVHGVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    I I +N++++ L D  +     +++      P  + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGIRIAVNVSARQLQDMNIVHQFASILDGAGLKPGLLDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES  + + + +  L+ + R++G  + LDDFGT  S LS L  +P D +K + + +T   
Sbjct: 535 TESCFIEDEDAAIGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAID 594

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +AK +   ++A+ +    + + L ++  D+ Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLAKALNFAVVAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 AWLAE 659


>gi|149377394|ref|ZP_01895138.1| putative integral membrane sensor domain [Marinobacter algicola
           DG893]
 gi|149358318|gb|EDM46796.1| putative integral membrane sensor domain [Marinobacter algicola
           DG893]
          Length = 693

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 220/443 (49%), Gaps = 10/443 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   ++  A QDNLT IPNR    DRL   +  +  + N    V+ +D+D +K IND+ G
Sbjct: 251 ANNELIKLALQDNLTRIPNRVLLGDRLEQAIHRAERN-NSEFAVLFLDLDGFKAINDMHG 309

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L  +  R+    +  D  ARL G+ F ++L   ++    A FA  +  SI  P
Sbjct: 310 HHVGDSLLKEVANRLLINKREGDTAARLGGDEFVLLLEP-SSPEISAVFAQRLIDSIEQP 368

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                  + ++ S+G A +     T  E++ NA+ AMYHAK +G N    F      +  
Sbjct: 369 YETSNIPLHISTSVGIAIYPQDGKTEHELMVNADAAMYHAKKQGRNGYCFFEHGMNANVH 428

Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + ++    L  AV  +EL L Y P        + GLEAL++W  P  G +S   F+ +AE
Sbjct: 429 LQMQMQQNLRQAVSRNELVLHYQPKFVAPAGPMTGLEALLRWQSPDHGFLSPDRFLPLAE 488

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  I  +++E   R +  W DQ +     + +N+++  L  + L + ++  + K  
Sbjct: 489 SSGLIVPIGNWVIEEACRQMRVWYDQGHRE-WSVAVNLSAVQLEHHSLVDVVREALKKHS 547

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS + L  +E+  M N E S  +L +L  +G+S+++DDFGT  S L YL  +P + +K
Sbjct: 548 LDPSHLVLEITETTAMRNAETSLTVLNKLSALGVSISIDDFGTGYSSLLYLKRLPANELK 607

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +T         AI+++II + K ++  I+A+ +        LT++GC+ +Q   +
Sbjct: 608 IDRGFITELAQDNDDEAIIQAIIALGKTLDMRIVAEGVETAEQQALLTQLGCNTLQGYLL 667

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
           A P   +++L+ +     + K T
Sbjct: 668 ARPAPPDALLEKIAH---MTKRT 687


>gi|150390685|ref|YP_001320734.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkaliphilus metalliredigens QYMF]
 gi|149950547|gb|ABR49075.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkaliphilus metalliredigens QYMF]
          Length = 674

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 149/684 (21%), Positives = 295/684 (43%), Gaps = 39/684 (5%)

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
           ++ +     +  +GI  I  L  ++    ++   +  IT            IY  ++ Y+
Sbjct: 25  HQINPHKEAMFITGIYGIFGLLWIALSDKILYIMVQNIT------------IYRQIQTYK 72

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
                   W+ + +  I +++ + KR         L G  ++ +      +         
Sbjct: 73  -------GWLYVLVTMILIYVLVEKR-------SVLFGKSIMKIKEAFEELQATYEELVA 118

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +    +     +  +  ++  WD      +  P   +I G +   ++     W   
Sbjct: 119 TEQELLYQKDLTESIIREAPVVIGIWDEEGKIKSLNPFGESIFGYSQDELYDKK--WWDL 176

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIG 514
           ++    +N    +   V   +    +E    A+D +   ++     + +    +    + 
Sbjct: 177 LNTEADENLMENIFKKVKNSKQFKNHELEFIASDQKRVDLLWNSSVLQHQEHCEPTEILS 236

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DIT +K   E +   AF D+LTG+  R      +T +++     +++   ++ +D +
Sbjct: 237 IGVDITNRKALEEELKNAAFYDSLTGLYKRTFLEVEVTRLIE-----EDVSFALIHLDFN 291

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IN+ LG ++GD+ L  +  ++   ++ P I+ RL  + F I+L    +   +    
Sbjct: 292 NFKYINNTLGYSIGDEFLKYIADKLHNAVEKPHIVGRLISDEFAILLKEPTSKEHVEHLL 351

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  S+         +  V+ S+G + +    +  + + +NA+LAM  AK  G   +  
Sbjct: 352 GEIIHSLGKTWTSNHHKFFVSFSMGVSLYPQDGLDHTILFRNADLAMSKAKREGKGRLLF 411

Query: 695 FRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +      S+   I+    L  A+E  EL L Y P   L   EI GLE LI+W H K G I
Sbjct: 412 YVDEILESNAEHIEMTNHLQHAIEKEELVLYYQPQYNLNTGEISGLEVLIRWIHTKKGFI 471

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AEE   I  I  ++++        +  Q     + I IN++SK L+ N   +
Sbjct: 472 SPAKFIPLAEETGQIYEIEKWVIKTALTQKEKFEKQGL-INLEIAINLSSKTLMSNVNFQ 530

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++A+IS      S+I +  +E+ ++ N + +   L +L+K+G+ + LDDFGT  S L Y
Sbjct: 531 EVEAIISSFDIDHSKITIEITETAIISNVKFAIERLEQLKKLGLKIALDDFGTGYSSLVY 590

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D VK + S +    E      I++SI+ +AK++   ++A+ I  E  +  L   
Sbjct: 591 LNVLPIDIVKLDRSFVKSIKENSKESFIIKSILYLAKDLNYKVVAEGIETEEQLAFLKEH 650

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
            C+  Q   ++ P+  + I + LK
Sbjct: 651 SCESGQGYLMSRPIPIHEIQEKLK 674


>gi|323487743|ref|ZP_08093001.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
 gi|323398477|gb|EGA91265.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Planococcus donghaensis MPA1U2]
          Length = 803

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 225/463 (48%), Gaps = 27/463 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR-P 566
           IL   GI N I  +    +  L   A  D LT +PNR  F  ++  ++D    + N +  
Sbjct: 339 ILGAWGIINKIFNEINGYQKDLTKQAHYDALTELPNRVLFQKQVDKLIDSIKNEKNNKAF 398

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D++K IND +G + GD +L  +  R+   +    I++R  G+ F ++     +
Sbjct: 399 AVLFIDLDRFKIINDTMGHSTGDSLLKEVAGRLKNCITDTAIVSRFGGDEFTVLFSDIKS 458

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              + D A  + ++I  P  L   E  ++ SIG + +      S  ++KNA++AMY AK 
Sbjct: 459 KKAVHDMAREINETILKPFLLKNNEYYISTSIGISMYPVDGSNSELLIKNADIAMYKAKE 518

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G ++   ++   +     R+ ++ ++  A+E  E  + Y P + + +EE+ G+EALI+W
Sbjct: 519 SGKSNYVFYQNEFNHQPIRRLQLENNIRKALELEEFQVYYQPKLTMPNEEVGGMEALIRW 578

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS SEF+ +AEE  +I  I  ++L         W+D+   PP+ + INI++  
Sbjct: 579 FHPEMGTISPSEFIPLAEETGLINPIGKWVLREACIQNKKWQDEGL-PPVVMAINISAYQ 637

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSES----------VVMGNPERSRLLLGRLRKI 854
                L + +  ++ +T            E           +++ N E     +  L+K+
Sbjct: 638 FHYGSLVQTVTEVLKETGL----------EGQWLELELTESLLINNEEYVLKAIESLKKL 687

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETT 912
           GI +++DDFGT  S LSYL   P DT+K + S +    +K+   +I ++II M   +   
Sbjct: 688 GIKISIDDFGTGYSSLSYLKRFPIDTIKIDRSFIKDIVDKKEMKSITQAIITMGHGLGCK 747

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++A+ +  E     L     D IQ  + ++ +      ++++ 
Sbjct: 748 LVAEGVETEEQKVLLETYKVDQIQGYYYSAAVSKEHATEMIRS 790


>gi|221197349|ref|ZP_03570396.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2M]
 gi|221204022|ref|ZP_03577040.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221176188|gb|EEE08617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221183903|gb|EEE16303.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2M]
          Length = 659

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 124/570 (21%), Positives = 246/570 (43%), Gaps = 13/570 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
               G  + G+    +     V     +V   D              + G     + G  
Sbjct: 91  ASVAGDLAHGLAFAEQ----VVSEVNSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR- 145

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +  ++        R+ +  F    R     E  +   +    +        S S  D 
Sbjct: 146 SVFELFMSPEQGAQSRSNITGFFASNRA-FSVERYINTVNGPRLFQFRNKFVQSGSGADE 204

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              I    DITE++ + + +   A  D LTG+PNR +  +R+ T++     D   +  ++
Sbjct: 205 QYLICSGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGIL 264

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K++ND  G   GD +L  ++  I   L     LARL G+ F ++         
Sbjct: 265 FLDLDNFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGT-RAL 323

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + + +  PI+L   E+  + SIG A       +   +++NA+ AMY AK  G 
Sbjct: 324 LEATAQIILERLRTPIHLGLMEVYTSCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGK 383

Query: 690 NHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    F   ++   +  + +  +L  A+E  +  L Y P++ +   ++  +EALI+W  P
Sbjct: 384 HTYRVFSLEMNQRVAKYMWLDTNLRKALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSP 443

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G ++  EF+  AEE  +I  +  +++   A    +W  +     + I +N++++ L D
Sbjct: 444 DRGLVAPVEFIRFAEESGLIAPLGRWVMRTAAAQAAAW--KVKGLGVRIAVNVSARQLQD 501

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +     +++      P  + +  +ES  + +   +  L+ + R++G  + LDDFGT  
Sbjct: 502 MNIVHQFASIVDAAGLKPGLLDIELTESCFIDDEHGAHGLMKQFRQLGAKIHLDDFGTGY 561

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P D +K + S +TG     +  A++RS++ +A  +  ++IA+ +    + +
Sbjct: 562 SSLSQLSRLPLDAIKLDRSFITGIDRNPRSQALVRSVVSLANALNFSVIAEGVETHAEAE 621

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L ++   + Q  + A P+  ++    L E
Sbjct: 622 FLKQIDVGHAQGYYFARPMPAHAFEAWLAE 651


>gi|28869943|ref|NP_792562.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853188|gb|AAO56257.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 703

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 208/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D+LTG+PNR    DR+   ++    +      +M +D+D +K +ND  
Sbjct: 254 EANHELTHRALHDSLTGLPNRTLLTDRIEQTMNKVRENGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+ + L   D LAR+ G+ F  +L+   +       A      I  
Sbjct: 313 GHHTGDLLLRQVALRLRQNLHLHDTLARVGGDEFV-LLVELQDQQDALAVATRQVNEIGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFTIGEHQLQISLSIGICIYPGNGTTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++    L Y P    +    VG EAL++W+HP  G +    F+ +A
Sbjct: 432 RNQLQLSQDLRSAIKHKHFCLYYQPKFDALTGLPVGAEALLRWNHPTQGLLGPDLFIALA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L    R +  W  Q   P   I +N+++     + L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLNEACRQMREWYTQ-GYPHWRIAVNLSALQFCHSGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L+ ++ 
Sbjct: 671 LGHPLPAQQFLENIRA 686


>gi|294853932|ref|ZP_06794604.1| diguanylate cyclase [Brucella sp. NVSL 07-0026]
 gi|294819587|gb|EFG36587.1| diguanylate cyclase [Brucella sp. NVSL 07-0026]
          Length = 778

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 287/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
           + ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 97  NLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 156

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 157 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 208

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 209 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 268

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 269 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 322

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 323 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 375

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 376 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 435

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 436 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 495

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 496 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 555

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 556 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 610

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +  ++ K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 611 IDLKNNDIARDIAYVLEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 670

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 671 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 730

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 731 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 760


>gi|317048679|ref|YP_004116327.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b]
 gi|316950296|gb|ADU69771.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. At-9b]
          Length = 732

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 112/433 (25%), Positives = 211/433 (48%), Gaps = 12/433 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  AF D LTG+PNR    DRL+  L ++A  D+ R  +++ID+D++K IND  G 
Sbjct: 307 EAQAQHLAFHDVLTGLPNRSMVEDRLSQALAMAARYDH-RVALLLIDLDRFKTINDTYGH 365

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD++++ +  R+  +++  D + R+ G+ F I++   +N  ++   A  +  +++ P 
Sbjct: 366 HAGDELIIQVGHRLTSIVRASDTVGRIGGDEFIIVMPDVDNIGQVQSLAKRIISALSEPY 425

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            L   E  + ASIG A      +   E+++ A++A+Y AK+ G      F          
Sbjct: 426 QLFGSEAWIGASIGLALAPKDGLDRQELMRKADIALYEAKNSGRGQFRQFERVMDESLRT 485

Query: 704 RVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           R  I  DL  A+ +   L + Y P++ +  + + G+EAL++W HP+ G +   EF+ IAE
Sbjct: 486 RQQIAADLRQALLHFDGLAVWYQPLMEISGQRVDGVEALLRWQHPERGEVPPGEFIAIAE 545

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L    +          +P + + +N++      +   E M  ++    
Sbjct: 546 ETGLIIPLGEWVLREACKT------SLRLPQLIVAVNVSPVQFRASGFVERMIEIVQSEG 599

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R++L  +E V++ +   +R  +  LR  G  + LDDFGT  S L+YL   P D +K
Sbjct: 600 ADPQRLELEITEGVLIEDEHEARNNIIALRSAGFRIALDDFGTGYSSLNYLSTFPVDKIK 659

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S     G  +   AI+ S++ +   +   + A+ +  E  +  L   GC+ +Q    
Sbjct: 660 IDRSFTQSLGVAQNSAAIIESVVRLGHAMGLMVTAEGVETEGQMSALADAGCNQLQGYLF 719

Query: 941 ASPLGFNSILKLL 953
           +  + F  + +++
Sbjct: 720 SQAVPFEELERMV 732


>gi|260598122|ref|YP_003210693.1| RNase II stability modulator [Cronobacter turicensis z3032]
 gi|260217299|emb|CBA31265.1| Protein gmr [Cronobacter turicensis z3032]
          Length = 684

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/566 (21%), Positives = 250/566 (44%), Gaps = 17/566 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                QG+    +     V  +  ++   D   +            GL    + G    +
Sbjct: 123 ARDLVQGLSFAEQ----VVSEANSVIVILDRHGNIQRFNRLSEEYTGLKEQEVIGQN-VF 177

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++   +    R  +  F        + E  ++    Q  ++       S S  + +  
Sbjct: 178 TLFMSPAEASASRRNVTGFFRN-GSSYEVERWIKTRKGQRLFLFRNKFVHSGSGRNEIFL 236

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + ++  +         +  ++ +D
Sbjct: 237 ICSGTDITEERRAQERLRVLANTDAITGLPNRNAIHEMISDAIAK---RGETQVGIVYLD 293

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L +++  I   L+   +LARL G+ F I++ ++ +   +  
Sbjct: 294 LDNFKKVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEF-IVMATDTSQAALEA 352

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            +  +   +  P  +   E+    S+G A           +++NA+ AMY AK  G    
Sbjct: 353 MSSRIITRLKHPFRIGLIEVYTGCSLGIALAPQHGDDRESVIRNADTAMYTAKENGRGKF 412

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+E ++L + Y P I     E+  LEAL++W  P+ G
Sbjct: 413 CVFCPEMNQRVFEYLWLDTNLRKALEKNQLVIHYQPKI-TASGEVDSLEALVRWQSPERG 471

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD      + + +N++++ L D  L
Sbjct: 472 LIPPLDFISYAEESGLIVPLGRWVMLDVVRQVAKWRDDG--MLLRVAVNVSARQLADQTL 529

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  ++   ++ S I +  +ES ++ N + +  ++G    +G  + LDDFGT  S L
Sbjct: 530 ISDLRQALADMHFTRSPIDVEITESCLIDNADLALSVIGAFSALGAQVHLDDFGTGYSSL 589

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K + S +          +++ +I+ +AK ++  +IA+ +  E +   LT
Sbjct: 590 SQLARFPLDAIKLDQSFVRDIHKQPVSQSLVHAIVAVAKALDLKVIAEGVESEEEDAFLT 649

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
           + G D  Q    A P+  + + +  +
Sbjct: 650 QNGVDQRQGFLFARPMTASELERWYQ 675


>gi|163752369|ref|ZP_02159564.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161327741|gb|EDP98928.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 681

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 214/430 (49%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +      +  ++ ID+D++K IND L
Sbjct: 243 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARAHKQ-QFCMLFIDLDRFKNINDSL 301

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     +ARL G+ F I+     +  + ADF   M   +  
Sbjct: 302 GHAIGDQFLTRIARVLERVVADKGTVARLGGDEFVILADEIRSPDQAADFVEHMLFQLNT 361

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L +  I   AS+G + +    +++ ++L++A++AMY AK  G N    F+       
Sbjct: 362 PMQLNDHTIHPAASVGISIYPDDGMSAEDLLRHADIAMYSAKAAGSNQWAFFKQQMTERA 421

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L Y P + +   ++V  EALI+W       IS   F+ +A
Sbjct: 422 AVRLRTEASLHDALKNNEFVLHYQPKLDINTGKVVACEALIRWQ-KDGRLISPMSFIPVA 480

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + I  W+ +     + I +N+AS+   D  L   ++ L  + 
Sbjct: 481 EETGIIIPIGRWVIEQACKTIKEWQKKY-NFALPIAVNVASQQFEDPSLVPDIKQLSLRY 539

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E++ + L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 540 QIRPELLEIEITETSLMNDIEKAIVKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 599

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T    +  AI  +I+ + K ++  I+A+ I  +  +  L    C   Q    +
Sbjct: 600 KIDRCFVTDL-PQESAIASTILMLGKQLKLNIVAEGIENQEQLDWLKANDCQMGQGFFFS 658

Query: 942 SPLGFNSILK 951
            PL  +   +
Sbjct: 659 KPLSQHDFEE 668


>gi|226358250|ref|YP_002787989.1| diguanylate cyclase with PAS/PAC and GAF [Deinococcus deserti
           VCD115]
 gi|226319893|gb|ACO47887.1| putative diguanylate cyclase with PAS/PAC and GAF [Deinococcus
           deserti VCD115]
          Length = 960

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 224/436 (51%), Gaps = 7/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     E +   A  D LTG+ NRQ F + L   LD +A        V+ ID+D +K +N
Sbjct: 529 EHHHLTEQLKYQALHDALTGLANRQLFEESLQRALD-AAQHVGGELAVLFIDVDNFKSVN 587

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL  +  R+   ++  D +AR+SG+ F +IL    +     + A  + + 
Sbjct: 588 DSLGHEAGDQVLREIASRLKGCVQHGDTVARISGDEFTVILP-FASESDALEVARQITEV 646

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSS 699
           ++ P+++++R+I V+ASIG             + + A+LAMYHAK  +    V    ++ 
Sbjct: 647 LSDPMHVVDRQIKVSASIGITLTPEGGSDPEMLHRTADLAMYHAKSRKMSFAVFRSEMNR 706

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R  +   L  A E+++  L Y P+IRL D ++ G+EAL++W H + G +S   F+ 
Sbjct: 707 RAYERFQLTSFLRQAAEHNDFELHYQPLIRLFDGQLTGVEALVRWQHEELGAVSPERFIP 766

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I++I  ++L+   R  + W+ Q     + + +N+++         E +   + 
Sbjct: 767 LAEETGLIESIGAWVLKEACRQGVLWQAQ-GHSQLRVAVNVSALQFERRNFVETVARCLE 825

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T +   +++L  +E V+M   E S   + +LR +G+ +++DDFGT  S LSYL  +P +
Sbjct: 826 ETGFPAEQLELELTERVIMRQVEESVWRMRQLRDLGVWISVDDFGTGYSSLSYLPRLPIN 885

Query: 880 TVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +TG +E       +++I+ +A+++    IA+ I    ++  L  +GCD  Q 
Sbjct: 886 ILKIDRSFVTGLSETSPTFPVVQAILSLARSLHLEAIAEGIETNEELSVLKHLGCDLGQG 945

Query: 938 SHVASPLGFNSILKLL 953
                    +   +LL
Sbjct: 946 HFFGRAKPASR-TRLL 960


>gi|254472797|ref|ZP_05086196.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Pseudovibrio sp. JE062]
 gi|211958261|gb|EEA93462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Pseudovibrio sp. JE062]
          Length = 562

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 150/564 (26%), Positives = 259/564 (45%), Gaps = 15/564 (2%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRD 462
           E  S+AV    + +   D     V          G ++    G   ++L          +
Sbjct: 6   ELLSVAVEQCAETIMVADHEGTIVYVNSQFEKTTGYSADYAVGRNLDFLRSGKTPPETFE 65

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIANDIT 520
           +  + L      +    + EF  R  D   +    +I P+    G      Y+ I  DIT
Sbjct: 66  DLWSTL-----GKGEPWEGEFINRRQDGTEYVEHSKISPIEWEGGSANKNYYLAIKKDIT 120

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+S   +   A+ D LTG+PNR  FL  L   ++ +   ++ +  V+ +D+D++K+IN
Sbjct: 121 EKKQSEVELSKLAYTDALTGLPNRAHFLQELDKAVEDTRRGES-QCAVIYMDLDRFKEIN 179

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD+ LV   +R   +L    +L+RL G+ F I+L  E ++ +       ++ +
Sbjct: 180 DTLGHDAGDEFLVEAAKRFEGVLNENGLLSRLGGDEFVILLR-ETSNAEAEMTVHRLQTA 238

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  PI+L E+   ++ASIG A    +  +SS MLK A++AMYH+K+   G    + ++  
Sbjct: 239 MVAPIDLGEQSPILSASIGVAVSQLASASSSTMLKQADIAMYHSKYNNLGFSFYTCQMEE 298

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +V+I E L  A+    L L Y PI+ L ++++ G+EAL++W+ P  G IS SEF+ 
Sbjct: 299 AVVRKVLISEKLTTAINEGNLRLNYQPIVELKNDKLSGVEALMRWEDPDLGPISPSEFIP 358

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   MI  I+ ++    A     W  +       I IN++ ++L        + AL+ 
Sbjct: 359 IAECQNMIDDISDWLFRETACQYRKWVSEGFEFAGRIAINLSERELAKPNRVTEILALLE 418

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P   ++  SES  + +   ++  L  L   G+ + +DDFGT  S L  L     D
Sbjct: 419 SLGVPPETYEIELSESAFVNDTGHTQENLDSLANAGMIIAIDDFGTGHSALWQLRTQKLD 478

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+ +I  MA  ++  +IA+ +     +  L  + C Y Q 
Sbjct: 479 KLKIDHSFVQRMESDQATRDIVEAITAMASLLDLKVIAEGVENLTQVDILRDIKCCYAQG 538

Query: 938 SHVASPLGFNSIL-KLLKERFPLV 960
            H A PL  +      L++   + 
Sbjct: 539 YHFAKPLTADIFASDWLEKAQAVA 562


>gi|91775020|ref|YP_544776.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacillus flagellatus KT]
 gi|91709007|gb|ABE48935.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacillus flagellatus KT]
          Length = 727

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 143/586 (24%), Positives = 246/586 (41%), Gaps = 19/586 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +    L                      S   +  +DI R  V+     A + G A    
Sbjct: 153 MAVDRLELRRLEISTEQSRRPFEEVARNSPTAMVWFDIHRRIVSWNQAAAALHGYAVEEG 212

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRR----GRLQYEFRVRAADNQFHWMIIRIRP 501
            G + +    I   +R  F  +++  V           +  + +R  D     + + +  
Sbjct: 213 EGLLVD--QLIPERERPTFHRLVEQAVEAGTFDGICMPEAAYGIR-KDGSEFELGLSLFC 269

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             + +G ++ +     DIT +K+  + +   A  D LTG+ NR  F   +   L  +   
Sbjct: 270 -WHEHGQLI-FNAHLQDITAKKREEKELHRLATTDLLTGMANRGRFYREVERALVSAE-- 325

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 V+++D+D +K +ND LG AVGD +L  + RR+ + +    + AR+ G+ F ++L
Sbjct: 326 ---PMAVLMLDLDGFKDVNDTLGHAVGDSILCEIGRRLEDGIGASGLAARIGGDEFAVVL 382

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +   K    A ++ K +A  I +   EI +TAS G A        +  ++ NA+LA+
Sbjct: 383 HQIDQPEKAQSIAQSLVKGLAHAILIDHHEIRITASCGVAISPQHAQEALTLIGNADLAL 442

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           +HAK  GG     F  +             +L  AV N E  L Y P IRL D  +VG E
Sbjct: 443 FHAKRLGGAQSHVFTPALRMEAVARHLYGLELHRAVHNGEFVLFYQPQIRLSDGALVGAE 502

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP+ G +S + F+   E   +   I  ++L+        WR Q  M    + +N
Sbjct: 503 ALIRWRHPERGLLSPAAFLPALENGPLAATIGNWVLDEACAQAAHWRRQ-GMTDFRMGVN 561

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +       ++L   + + + +    PS ++L  +E++V+   E +   L  LR+ G+ + 
Sbjct: 562 LFGAQFRVDDLAATVISTLERHGLPPSALELEITENIVLEQDEIALESLRSLREAGVGVA 621

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            DDFGT  + LS L + P   +K + S + G   + +  A++ ++I MA+      IA+ 
Sbjct: 622 FDDFGTGYASLSLLKHYPLSRIKIDRSFVQGILDSPQDRAVINAVIDMARAFSLDTIAEG 681

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           I        L  MGC   Q    + PL             PL +  
Sbjct: 682 IETAAQQTALFEMGCSEGQGYFFSKPLSAIQFTDAFGLGQPLSRRA 727


>gi|221065824|ref|ZP_03541929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Comamonas testosteroni KF-1]
 gi|220710847|gb|EED66215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Comamonas testosteroni KF-1]
          Length = 868

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 215/439 (48%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S   I   AF D LTG+PNR     +    +  +AT D  +  V+ ID+D++K++N
Sbjct: 418 ERELSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAATHD-AQLAVLFIDLDRFKQVN 476

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L S+  R+  +L+  DI  RLSG+ F  +L    ++  +A+    +++ 
Sbjct: 477 DSLGHPVGDELLRSVAARLQRVLRSSDIAGRLSGDEFVAVLPHC-DAEYVANTIERLQEL 535

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P+N+ +  + ++ASIG A + S       ++  A++AMY AK +G      F     
Sbjct: 536 LAEPLNIADTSLAISASIGIAMFPSDGRDMETLVHRADMAMYQAKSKGRGRFCFFSSEMN 595

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R   +R+ ++  L  A+++  L L Y P I +    + G+EAL +W H + G IS + F+
Sbjct: 596 RLAQERLALETALRKALKSGGLRLHYQPQIEMATGRLYGVEALARWSHAELGEISPARFI 655

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + LE   R +  WR +    P  + +N++     + +L   +   +
Sbjct: 656 PLAEECGLIADLGSWALEEACRQLSQWRAKGLEVPA-VSVNLSPSSFHNLDLPRMIADTL 714

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  + L  +ES+++     +   +  +   G+ L++DDFGT  S LSYL  +P 
Sbjct: 715 DRNDLVPQDLTLELTESILLDTNPSTMKTINEVHAHGVRLSMDDFGTGYSSLSYLRRLPV 774

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +      E   A+  +I+ + K++  T++A+ +        L   G    Q
Sbjct: 775 SELKLDRSFVADLEHDEAARALSSAILGIGKSLHLTVVAEGVETPTQSVMLCEQGYPVAQ 834

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL        L  
Sbjct: 835 GFLFARPLAPQEFEHWLAA 853



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 3/142 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +   V       Q       R SL    S   V   D     V        + G  +  +
Sbjct: 122 IATDVTQRRALEQAQQEHLRRLSLVADASDTAVVISDGNSRIVHVNGGFTRMFGWRTEEV 181

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G  R  +  +     + F     S +   +   + E  V     Q +W  +   P+ ++
Sbjct: 182 AG--RTPIALLAPQVSETFVDRYRSDLRAGQPVGREEI-VVGKHGQRYWAKVISNPILDA 238

Query: 506 NGDILRYIGIANDITEQKKSLE 527
            G     + +  DIT  K    
Sbjct: 239 GGCWQYTVSMLTDITRSKMHEA 260



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 2/115 (1%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
             + ++ +         +   ++GL      G          +     +R I        
Sbjct: 25  MAMAEFGLDGVLCRANDNYLQLMGLTREQCLGRAHRSFCSAQLAGSARYREIWAHLCAGN 84

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 E R+R +D    W+     P+ ++ G +   + IA D+T+++   +   
Sbjct: 85  AYSGVVE-RLR-SDGSSCWLEATYSPVMDAQGRVAHILKIATDVTQRRALEQAQQ 137


>gi|317047099|ref|YP_004114747.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pantoea sp. At-9b]
 gi|316948716|gb|ADU68191.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. At-9b]
          Length = 917

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 134/564 (23%), Positives = 259/564 (45%), Gaps = 17/564 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER       + D +W+ D        +     + G       G   + L   
Sbjct: 365 QRELADSEERFRDLAEAASDWIWETDEQGRLCYLSARFTDVTGHEVKRWLGRHLDHL-LS 423

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +       ++       R  L+ +F   +A  +     +  + +   NG    + G  
Sbjct: 424 HPS-HSLVTWLMRQGEDVPRMPLRCQF--MSATGERRIGQLMAKTIR-RNGLRSGFRGTV 479

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT +  +   I   +  D LTG+ NR    + LT  LD +  DD     V+ +D+D++
Sbjct: 480 SDITYEVDAQARIQFLSRHDILTGLANRMQLQEFLTAHLDQATDDD--PLIVISLDLDQF 537

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G  VGD VL  +++R+  L+   ++ ARL G+ F I+++ E +   +     A
Sbjct: 538 KPINDTWGHTVGDAVLNQISQRLQSLMGAHELAARLGGDEF-ILVMREASRAGVEYRCRA 596

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++I  P+     ++++TAS+G             +L+ A++A+  A+  G N    + 
Sbjct: 597 LQRAIHQPVISGSHQLSLTASMGIVCAPQDASQPEALLRLADIALGQARAAGRNQWVWYS 656

Query: 697 VSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  +    + + +  A+ N    L Y P  +L + ++ G EALI+W   +   I+ 
Sbjct: 657 NEMASHLQSKREMVQAMEAALANEAFSLHYQPRYQLQNGQLAGAEALIRWQVAEDKWITP 716

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AEE  +I AI+ ++L R   D   W DQ      ++ +NI+  +   ++L + +
Sbjct: 717 DRFIPLAEENGLINAISDWVLMRACTDARDWGDQR-----YVSVNISPVEFRGSDLVQRV 771

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + +  +    +R++L  +E++   +P+R+  ++  LR +G+ LT+DDFGT  + L YL 
Sbjct: 772 ASALEVSGLPATRLELEITENITFEHPDRALEIMQGLRALGVRLTVDDFGTGYAALGYLK 831

Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PF+ +K + S M     + +  +++  I+ +A+    TI A+ I  E  + EL  + C
Sbjct: 832 TFPFNGLKIDRSWMKEFPESPQAQSVVAGIVGLARAFALTITAEGIETEAQLNELKVLSC 891

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           +  Q   +  P+   +   LL E+
Sbjct: 892 EEGQGYFLGRPMPLAAFSALLNEQ 915


>gi|206579743|ref|YP_002238521.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Klebsiella pneumoniae 342]
 gi|206568801|gb|ACI10577.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Klebsiella pneumoniae 342]
          Length = 551

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 131/537 (24%), Positives = 236/537 (43%), Gaps = 15/537 (2%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++        ++         G  S  + G       Y             +  +  R 
Sbjct: 22  AIYMLSTDGMVISWNEGARRAKGYLSDEIIGCYFGLF-YSESEQLSGVPAK-NLEIALRS 79

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G+ + E      D    W  + I  + +   ++L +  I  DI+EQK   + I   A  D
Sbjct: 80  GQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNNLLGFAKITRDISEQKAINDRIAWMARYD 139

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR  F +R+  ++     +D  R  +  ID+DK+K+IND+ G  +GD +L  + 
Sbjct: 140 ALTGLPNRVEFFERVEKLIT---GNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVA 196

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + + L+  +++AR  G+ F  +     +  ++  FA  +    +        E+ ++A
Sbjct: 197 GAVLKTLQKEEMVARFGGDEFVAVKP-FADEGEVDAFAARLWHCFSGKQTFAATEVVLSA 255

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG + +       + +L N++LAMY AK    + +  +        R    +  D+   
Sbjct: 256 SIGISVYPEDGTDINTVLSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMAADIRRG 315

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y  I  + D  I G EAL++W HP+ G I    F+ IAEE   I  +  ++
Sbjct: 316 IHAGEFSLHYQAIRNIKDRRITGYEALLRWQHPQLGPIPPDVFIPIAEESGAIVPLGYWV 375

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++  +              + +NI+   L      E ++ ++ +T Y  S ++   +E
Sbjct: 376 LEQVCNE-----SLEKGLNRKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTE 430

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           +  + N + +  +L  L+K+GIS+ LDDFGT  S LS L    FD +K + S M    S 
Sbjct: 431 TAFIINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSMLRDFHFDVIKLDRSFMLDVESN 490

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  + +R+II +  +I T +IA+ +     ++ L   GCD +Q      P+    +
Sbjct: 491 PQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHL 547


>gi|91203249|emb|CAJ72888.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 829

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 139/568 (24%), Positives = 239/568 (42%), Gaps = 12/568 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H+ A     +       + S AV  S   +   D+        P    + G A     G 
Sbjct: 266 HLTAEIADHKRAKEQLLKLSQAVEQSFTAIVITDVACAIEHVNPKFTEVTGYAREEALGN 325

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L   +++D +    I+   +       + E      D +  +  + I  +   +G 
Sbjct: 326 KLFDLLLFNMSD-ERHENIITMVLSGEI--WRKELVNSRKDGEQFFAQVTISAVRGDDGY 382

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ +IG+  DITE+KK  E ++  A  D LT + NR+ F   L   L  S    N    +
Sbjct: 383 IINFIGVIEDITERKKFEEMLVVMAEHDPLTNLFNRRRFQVELEYWLGYSKRY-NTGGAL 441

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +DID +K IND LG  VGD++LV     + E ++  DI+ARL G+ F +IL +  N  
Sbjct: 442 LFLDIDNFKYINDTLGHKVGDEILVEFAILLKERVRPNDIIARLGGDEFAVILPN-TNVD 500

Query: 629 KIADFAIAMRKSIAMPIN-LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               FA  + +S       L ER   +T S+G A +    + +  +L  A++AMY AK  
Sbjct: 501 HARSFAEQITQSAQKHFRVLNERGHNITTSLGIALFPDHSLEADALLACADMAMYGAKEA 560

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N    F +   ++        + +  A+   +  +   PI+ L    + G EAL++  
Sbjct: 561 GKNQCCIFSLEQKQNIESRFLWDKRIRSALGKDDFEIYLQPIVDLRSNAVFGYEALLRMV 620

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 I  +EF+  AE    I  I+ +++    R  + +  Q     +   IN++ K +
Sbjct: 621 GENGELIPPAEFLPYAERHGSILDIDRWVVRNAFRLFVRYNMQEKKAVLE--INLSGKAI 678

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D+ +   ++  +S +      I    +ES V+ N E +R  +  L   G    LDDFG 
Sbjct: 679 TDSGMLSFIKEELSASQADARYITFEVTESAVVENIEYARYFMNDLCNQGFRFALDDFGI 738

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
                +YL ++P D +K +G  +            +++I  +   +E  IIA+ +  +  
Sbjct: 739 GFCSFTYLKHLPVDFLKIDGGFIRNLPDNPTDQCFVKAIADIGNGLEKKIIAEFVENKQT 798

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
           I  L  +G  Y Q    +  L  + I K
Sbjct: 799 ISLLKEIGVVYGQGHFFSKALSASEIFK 826


>gi|90426221|ref|YP_534591.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108235|gb|ABD90272.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 778

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 138/689 (20%), Positives = 275/689 (39%), Gaps = 35/689 (5%)

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
                    I     L   S    + T+  A   L    +           + + R  + 
Sbjct: 92  WEQRYRVGAIVYGIALGIWSATVLLRTSDAAAHMLCVTTVVAYTSAGVG--RTFGRPRIF 149

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
               +L+    + L +       +  +    +   V I  L       ++ A     +  
Sbjct: 150 HL-QVLLGCGPLILALMFVGGAYHFALALLSIVFFVAIRHLTSSLQRIYLNAWIAREREA 208

Query: 401 FSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMH--GPIRNWLP--- 454
               +    A+      +  +              A ++ L    MH  G   + L    
Sbjct: 209 AIATQ-FDTALNNMPHGLCMFSGSDSRLAVMNQRFADMMRLPHDFMHRSGSASDILAACV 267

Query: 455 ---YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               I  +      + +++ +      +  E     A           +PM +       
Sbjct: 268 AAGTISPSSGRMIVSEIENAIAGEIITVDSETTDAHA------FCWTFQPMIDG-----G 316

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMV 570
            + +  DITE++ +   I+  A  D LTG+PNR +F D +  +L  +    +     ++ 
Sbjct: 317 TVVLVEDITERRSAEARIIHLARYDELTGLPNRVNFRDEIERLLMAVHGHAETRPSALLF 376

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D++K++ND LG   GD +L  +  R+ E+L+  D +AR  G+ F +      +    
Sbjct: 377 IDLDQFKQVNDTLGHPCGDQLLCDVADRLREMLRPEDFVARFGGDEFVVFQQHIASKEDS 436

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A  +   ++    +    + + ASIG A  T+  + +  +LKNA++A+Y AK  G  
Sbjct: 437 ALLARRIVDRLSERYLIDHHVVEIGASIGIAV-TAPGVKADVLLKNADMALYRAKADGRG 495

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               FR     +      ++ DL  A+ N E  + Y P++ L    I   EAL++W+HP 
Sbjct: 496 TFCFFREEMAHTVESRRIMELDLRRALANEEFEIYYQPLVNLKTGRISTCEALLRWNHPV 555

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  + + +AEE+ +I  +  ++L +   + + W D      + I +N +S+     
Sbjct: 556 RGTVSPVDIIPVAEEMGLIVDLGRWILRKACMECMRWPDA-----VSIAVNFSSQQFHQR 610

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           ++   ++  +  +    +R+++  +ES ++ N + +   L +L   G+ + LDDFGT  S
Sbjct: 611 DVMNEVRYALEVSGLPANRLEIEITESSLLRNTQWTLDALSQLHAAGVRIALDDFGTGYS 670

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LSYL   P   VK + S + G    R   +LR +  ++ ++  +++ + I     ++ +
Sbjct: 671 SLSYLHNFPLQKVKIDRSFLEGIDADRPLTLLRGVARLSADLGMSVVVEGIETNEQLELI 730

Query: 928 TRMG-CDYIQDSHVASPLGFNSILKLLKE 955
           +  G     Q    + P+    + +LL  
Sbjct: 731 SADGTVTEAQGYLFSRPVPAAQVRQLLAA 759


>gi|294146983|ref|YP_003559649.1| putative sensor protein [Sphingobium japonicum UT26S]
 gi|292677400|dbj|BAI98917.1| putative sensor protein [Sphingobium japonicum UT26S]
          Length = 724

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 144/575 (25%), Positives = 249/575 (43%), Gaps = 12/575 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           V+  V         +    E   L V  +  + W  D     +  T       GL     
Sbjct: 124 VMIDVTTEHAEIGRLRRSTENLRLIVEYNPQLPWLADPDGRIIDFTDRWLESSGLDREEA 183

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G    WL   H +D       +   +           R+   D Q+ WM  +  P  + 
Sbjct: 184 EGN--GWLAATHPDDIGPLTQRITHSLTT-GESFDVRVRLMVND-QYRWMRAQAYPRRDE 239

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G I+R+ G   DI E     E I  NA  D+LT +PNR  F   L   L  + T+   +
Sbjct: 240 EGRIIRWYGYTEDIHESVLIEEQIRWNAEHDSLTELPNRAMFNACLDKALAKALTEFR-K 298

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V ++DID +K +ND++G   GDD+L S   R+ ++     ++ARL G+ F I++ +  
Sbjct: 299 VGVFLLDIDNFKDVNDLMGHHAGDDLLKSFASRLKDIFAGEGVVARLGGDEFAILIENVE 358

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++AD A  +            R +    SIG A++      ++E+L++A+LA+Y AK
Sbjct: 359 SRQQLADLANRVLTIRETLFA-AGRSLECGVSIGVAAFPEDGRVATELLRHADLALYRAK 417

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G   ++ F  S      +RV +      AV +  +   Y P + L   E+VG EAL++
Sbjct: 418 SLGRGRMQMFEQSLLEDMQERVAMINRARTAVRDGTIISYYQPKVSLQTGELVGFEALLR 477

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W        S +E     ++  +   I   M  ++  D+ +WR +       + IN++S 
Sbjct: 478 WRDSCGTIRSPAEIYAAFDDHDVADMIGQTMTSQVFADMAAWRARGLPVG-HVAINVSSA 536

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDD 862
           +L        +   + +   +P  I++  +E V +G   +  R  +  L    I L LDD
Sbjct: 537 ELRRERFAGRLIETMDRYSIAPDSIEIEITEGVFLGAASDTVRRSIDELHMCNIPLALDD 596

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  + LS+L  +P  T+K + S ++G T  E   AI+ +++ + + +   ++A+ +  
Sbjct: 597 FGTGFASLSHLRSLPVSTLKIDRSFVSGVTARESDGAIVSALVTLGRALNMKVVAEGVEE 656

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                +L  MGCDY Q  +   P    +I  L++ 
Sbjct: 657 ADQSIKLREMGCDYAQGFYFGRPAPSENIPALIQS 691


>gi|330971256|gb|EGH71322.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 703

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 109/435 (25%), Positives = 207/435 (47%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  DNLTG+PNR    +R+   +  +         +M +D+D +K +ND  
Sbjct: 254 QANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+   +       A      +  
Sbjct: 313 GHHTGDLLLRQVALRLRNSLHRRDTLARVGGDEFV-LLVELQHPEDALAVARRQVNEVGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFIIGEHQLQISLSIGICVYPGNGSTQHELLINADAAMYHTKAAGKNGYSFFDVSMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    M    VG EAL++W+HP+ G +    F+ +A
Sbjct: 432 RNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPEQGVLGPDLFISMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYSHWRIAVNLSALQFCHAGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILKLLK 954
           +  PL     L+ ++
Sbjct: 671 LGYPLPAEQFLEEIR 685


>gi|269103399|ref|ZP_06156096.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163297|gb|EEZ41793.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 674

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 212/436 (48%), Gaps = 10/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I      D LTG+ NR  F  +L   +        +   ++ +DID +K IND L
Sbjct: 239 EQQEHIEQLIHTDPLTGLYNRHGFTRQLEQHI-----QQQIPLLMLYLDIDNFKNINDSL 293

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD VL  +  R+  LL    I+  L G+ F ++L   ++          +   I  
Sbjct: 294 GHNIGDRVLQEIGNRLSHLLPKHAIIGHLGGDEFCVLLPQADSEFSGEQLCQNVINQINQ 353

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P +L      +  SIG   +      +  +L+NA+ AMY AKHRG N    F   ++   
Sbjct: 354 PFDLHHFRKHLACSIGLVQYPGDGNDARILLQNADTAMYEAKHRGRNRFIKFDDAMNKEA 413

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ ++ +L  A++N  L + Y P +   D  I G EAL++W HP  G IS ++F+ +A
Sbjct: 414 RMRLWLEIELQKALQNQGLEVWYQPKVNARDFAINGAEALVRWKHPVEGYISPAQFIPVA 473

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I+ +   ++  +   +  W+D+  MP   + IN++ +   +  L   M+ L  +T
Sbjct: 474 EESGLIEQLGRVVMREVFSTVKKWKDRGLMPG-RVAINLSPQQFGNPSLIAFMKQLKFQT 532

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  I    +ES VM + E +  +L  ++++G +L++DDFGT  S LSYL   P D +
Sbjct: 533 GINPDDITFELTESAVMSDSEHTISMLKAIKQLGFALSIDDFGTGYSSLSYLARFPLDEL 592

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       K++ ++ +II + K +  +++A+ +        L+ + CDYIQ  H
Sbjct: 593 KIDRAFIKDIDEVPKQVTLIENIINLGKALNMSLVAEGVETREQAILLSNLNCDYIQGFH 652

Query: 940 VASPLGFNSILKLLKE 955
              P     +  +L +
Sbjct: 653 FYRPQPKQELEGVLLQ 668


>gi|116691653|ref|YP_837186.1| RNase II stability modulator [Burkholderia cenocepacia HI2424]
 gi|116649653|gb|ABK10293.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
          Length = 667

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 116/545 (21%), Positives = 235/545 (43%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFA- 177

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                  E  +   +    +        S S  D    I    DITE++ + + +   A 
Sbjct: 178 SNQSFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQYLICSGIDITEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   +     +      ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 298 VSAIISGCLPSGATLARLGGDEFLVLFEHATRP-LLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + I +N++++ L D  +     +++      P  + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGVRIAVNLSARQLQDMNIVHQFASILDGAGLKPGLLDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES  + + E +  L+ + R++G  + LDDFGT  S LS L  +P D +K + + +T   
Sbjct: 535 TESCFIEDEEAANGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAID 594

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +AK +   ++A+ +    + + L ++  D+ Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLAKALNFAVVAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 AWLAE 659


>gi|152970229|ref|YP_001335338.1| hypothetical protein KPN_01677 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262044291|ref|ZP_06017357.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006248|ref|ZP_08305553.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|150955078|gb|ABR77108.1| hypothetical protein KPN_01677 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259038350|gb|EEW39555.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535899|gb|EGF62324.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 551

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 133/537 (24%), Positives = 238/537 (44%), Gaps = 15/537 (2%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++        ++         G  S  + G       Y             +  +  R 
Sbjct: 22  AIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLF-YSEAEQLSGVPAK-NLEIALRS 79

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G+ + E      D    W  + I  + +    +L +  I  DI+EQK   + I   A  D
Sbjct: 80  GQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYD 139

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR  F +R+  ++     +D  R  +  ID+DK+K+IND+ G  +GD +L  + 
Sbjct: 140 ALTGLPNRVEFFERVEKLIT---GNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVA 196

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + + L+  +++AR  G+ F  +    ++  ++  FA  +    +        E+ ++A
Sbjct: 197 GAVLKTLQKEEMVARFGGDEFVAVKP-FSDEGEVDAFAARLWHCFSGKQTFAATEVVLSA 255

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG + +       + +L N++LAMY AK    + +  +        R    +  D+   
Sbjct: 256 SIGISVYPEDGTDINTILSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMAADIRRG 315

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y  I  + D  I G EAL++W HP+ G I    F+ IAEE   I  +  ++
Sbjct: 316 IHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQLGTIPPDVFIPIAEESGAIVPLGYWV 375

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++  +        N     + +NI+   L      E ++ ++ +T Y  S ++   +E
Sbjct: 376 LEQVCNE-----SLENGLNRKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTE 430

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           +  + N + +  +L  L+K+GIS+ LDDFGT  S LS L    FD +K + S MT   S 
Sbjct: 431 TAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSMLRDFHFDVIKLDRSFMTDVESN 490

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  + +R+II +  +I T +IA+ +     ++ L   GCD +Q      P+    +
Sbjct: 491 PQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHL 547


>gi|304396063|ref|ZP_07377945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
 gi|304356432|gb|EFM20797.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pantoea sp. aB]
          Length = 661

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 125/553 (22%), Positives = 247/553 (44%), Gaps = 13/553 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D   +            GL    + G    +  ++   +    R  
Sbjct: 114 EQVVSEANSVIVILDQRGNIQRFNRLSEEYTGLNEHEVIGRN-VFQLFMTRQEASQSRRN 172

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  F        + E  V+    Q  ++       S S  + +  I    DITE++++ E
Sbjct: 173 IAGFFR-DGNSYEVERWVKTKKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQE 231

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +   +++  L+ +  D+     V+ +D+D +KK+ND  G   
Sbjct: 232 RLRVLANTDTVTGLPNRNAIHQQISLALERAGHDET---GVVYLDLDNFKKVNDAYGHMF 288

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L +++  I   L     L RL G+ F  +L    +   +   +  + + +  P  +
Sbjct: 289 GDQLLQAVSLAILSCLGKDQTLGRLGGDEFV-VLAEHTSQAALEAMSSRILERLRQPFRI 347

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705
              E+    SIG A           +++NA+ AMYHAK  G      F   ++    + +
Sbjct: 348 GLIEVYSGCSIGIAFAPLHGEDRESLIRNADTAMYHAKENGRGKFCVFAAEMNQRVFEYL 407

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L  A+E   L + Y P I   D ++   EAL++W+ P+ G +S ++F+  AEE  
Sbjct: 408 WLDTNLRKALELDHLLVHYQPKID-SDGQVRSAEALVRWNSPERGMVSPADFIPYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  +++  + + II WR Q     + I +N++++ LLD  +   ++  + +   + 
Sbjct: 467 LIVPLGRWVMLNVLQQIIVWRQQGIF--LRIAVNVSARQLLDQSIYTDLKQALHEANITD 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +ES ++ N   +  L+ + +++G  + LDDFGT  S LS L  +P + +K + 
Sbjct: 525 CPIDIELTESCLIENETEALKLMKQFQELGAQVHLDDFGTGYSSLSQLARVPINAIKLDQ 584

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          +++R+I+ +AK ++  +IA+ I    + K + + G D  Q  + A P
Sbjct: 585 SFIRDINKQPVSQSLVRAIVAVAKALDLQVIAEGIETPDEEKFVLKSGVDGRQGYYYAKP 644

Query: 944 LGFNSILKLLKER 956
           +        L + 
Sbjct: 645 MPAEQFGHWLAKH 657


>gi|289675902|ref|ZP_06496792.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 826

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 135/512 (26%), Positives = 240/512 (46%), Gaps = 13/512 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 320 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 378

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                   R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 379 ESEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 436

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DI+E++ S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 437 SDISERRASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 495

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
           K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 496 KPINDSLGHAAGDRMLQEMATRLLACVSEDDTVARMGGDEFTLLLEPDETREAALNRAIH 555

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 556 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 615

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 616 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 675

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 676 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQL 734

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 735 GKRIALILEQTGLSPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSL 794

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
           +YL   P D +K + + + G    E+   I R
Sbjct: 795 NYLKQFPIDVLKIDRTFVDGLPSGEQDAQIAR 826



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 171 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 230

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEFRVR-------AADN 490
            +      W   I +      F  ++D             RL+ E  +R        AD 
Sbjct: 231 WILQN--GWSAAIANPQQIVGFDALMDRIDKVLDKPQELARLREEVTIRMFLFDCLRADG 288

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  +   +G+     G+  DI++Q+++ + +   A 
Sbjct: 289 RKIPVELRVVLVWGEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 332



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG +   +H     +    +H  D  N++ + L          LQ
Sbjct: 78  LSQRVIYSNHHFGYTLGYSKSELHAMGEFFWEVLLHPEDARNYQDMRLRQRHHGHNELLQ 137

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  ++ +    IR + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 138 RVLRFRDRESNWRSFDIREQALAWDAEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRML 197

Query: 533 A 533
           A
Sbjct: 198 A 198


>gi|289666034|ref|ZP_06487615.1| putative signal transduction protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 920

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 136/611 (22%), Positives = 250/611 (40%), Gaps = 12/611 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V L+G   +Q+V         I    E  +
Sbjct: 303 FELEINGLLGANPHHLRVWAQPVFDGDGSMVRLLG--QLQNVTEQRQTDALIRWRTELLN 360

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 361 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 418

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G  LR++ +  DIT ++++ E 
Sbjct: 419 LRISDGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPLRFVALFRDITREREANER 476

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K IND  G A G
Sbjct: 477 IELLAHYDRLTGLPNRFLLREQAENAIREANERGQV-LAMLLIDLDGFKSINDSFGHATG 535

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 536 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 595

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 596 HVTVKLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTFHYYSQDVLLRAQRRLE 655

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+E  E  LVY P++  + +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 656 LEHALQGALEREEFTLVYQPLVNTVGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 715

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 716 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPS 774

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 775 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 834

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 835 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 894

Query: 945 GFNSILKLLKE 955
               + + L+E
Sbjct: 895 SPRDMAQWLRE 905



 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 100 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEPPLPNNLTALSGLIHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 160 AAIQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLREQ 227



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+ +  +HG IR+ L  
Sbjct: 220 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMTNVRLHG-IRDVLRL 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 279 LGRPSVAQLRSAWRK-IKHEGMPVHFELEINGLLGANPHHLRVWAQPVFDGDGSMVRLLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|332531799|ref|ZP_08407684.1| hypothetical protein PH505_aa01050 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038775|gb|EGI75217.1| hypothetical protein PH505_aa01050 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 843

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/564 (21%), Positives = 244/564 (43%), Gaps = 20/564 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIH 457
            +FS  +R  L +     +V + D   +     P   T+ G     S+  P+  +     
Sbjct: 278 ELFSAHQRILLHL---NTVVLELDQQGNIRFINPAWETLSGFGVKSSLQNPLSTYCNN-- 332

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D+      ++  +   + + Q E ++   +    W+  R++ + NS  +        +
Sbjct: 333 -EDKGRLDYTINDILHGGKQQQQIEVKLTHKNGNLIWVECRLQLIKNSRNNAT-ITATID 390

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +I E+K++   +   A  D LTG+ NR  F  +L  I     T D +   V+ ID+D +K
Sbjct: 391 NIHERKQAEIQLRHLAHHDPLTGLHNRYYFDQQLNKICQDKYTYDGIEHAVIYIDLDHFK 450

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G   GD VL  + +     +    ++ R+ G+ F +IL + N            
Sbjct: 451 IINDSKGHHQGDIVLKEVAQLFKANIGDDHLVCRIGGDEFAVILTNMNLLDAHLIAEGVC 510

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                      ++  T++ SIG    T+     +E LK A++A+Y AK+ G N V  +  
Sbjct: 511 SAIEKHAFKSEDQIYTISCSIGLTQITTQNNDPNECLKQADIALYIAKNLGRNLVHCYSK 570

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +++ +        ++  A++   + L Y PI    + ++   EAL++    K   + 
Sbjct: 571 EDAQNNTLQTGLEWGHEIRQALQQDNIELHYQPIWDFKECKVAYFEALLRLKL-KGELVY 629

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+   E L     ++  ++      +    +        + IN++++  LD  L   
Sbjct: 630 PNQFIPSLEMLNDTFLMDQCVIRNAIACVSKHPELN-----QVAINLSAQSFLDERLLPL 684

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +++ + K     SRI    +ES  + N + +R ++ +L  +G   ++DDFGT  S  +YL
Sbjct: 685 IESNLEKYNVPASRIIFEITESASINNLKATRKMIEKLNSLGCHFSIDDFGTGFSTFNYL 744

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   VK +GS ++        +A++++I  ++++++   +A+ +  E     L  +G
Sbjct: 745 KQLPAQHVKIDGSFVSDMLNDPIDLALVKAINDISRSLDKRSVAEYVENEDIFFALKEIG 804

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
            DY Q   +A P+    +   L++
Sbjct: 805 VDYGQGYFIARPIPVEKVKDELEK 828


>gi|237800663|ref|ZP_04589124.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331023522|gb|EGI03579.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 706

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 209/436 (47%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LTG+PNR    DR+   +  +         +M +D+D +K +ND  
Sbjct: 254 QANLELTHLALHDKLTGLPNRVLLTDRIEHAMQKTREQGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +  R+ E L   D LAR+ G+ F  +L+  N+  +    A      I+ 
Sbjct: 313 GHHVGDLLLRQVAIRLRENLHREDTLARVGGDEFV-LLVELNDPQEATLVAARQVSVISH 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   ++ ++ SIG   +  + +T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFEIGGHQLQISLSIGICVYPGNGVTQHELLVNADAAMYHTKAAGKNGFSCFDASMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL +A++     L Y P    +    VG EAL++W+HP+ G +    F+ +A
Sbjct: 432 LNQLQLSQDLRVALKQKHFCLYYQPKFDALSGLPVGAEALLRWNHPQRGLLGPDLFIGLA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q   P   I +N+++     + L   +   + + 
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYPHWRISVNLSALQFCHSGLVTAVADTLDRH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++ + L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADVSLAVLKRLSEMDVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHALQGFL 670

Query: 940 VASPLGFNSILKLLKE 955
           +  PL     L  ++ 
Sbjct: 671 LGHPLPAQQFLDEIRA 686


>gi|170720554|ref|YP_001748242.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudomonas putida W619]
 gi|169758557|gb|ACA71873.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 818

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 129/621 (20%), Positives = 256/621 (41%), Gaps = 17/621 (2%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT---VIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                   +++  LV  L+  + LI F      + +     F+  +  + ER  + +   
Sbjct: 195 ALGEGSRMLLRVLLVTNLLTALFLITFAWRRSSKLLAQRQAFASALQEEKERAQITLQAI 254

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVG 473
           GD V   D+        P    +    +G   G         +    +++  T+L+  + 
Sbjct: 255 GDAVITTDVDGSIGYMNPAAEQLTHWQAGQALGLPLTALFSLVDEQAQNDSSTLLEQVLS 314

Query: 474 YR-RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +G  ++   ++  D     + +   P+  S+G +   + + +D+T++++ +  +   
Sbjct: 315 GSLKGGAEHARLIQRLDGSTVAINLVGSPII-SDGQVAGIVLVLHDMTQERQYIANLSWQ 373

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR+ F  RL   L+        R ++M +D+D++K +ND  G A GD++L
Sbjct: 374 ATHDALTGLANRREFEYRLEQALNDLVRQGG-RHSLMFLDLDQFKLVNDTCGHAAGDELL 432

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   +  +L+  D LARL G+ FG++L +              +   ++      R  
Sbjct: 433 RHICAVLQSVLREGDTLARLGGDEFGVLLENCPGEQAERIAENLRQAVQSLHFVWKGRPF 492

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIK 708
             T SIG      +  T    L+ A++A Y AK +G N ++ +         R   +   
Sbjct: 493 VTTVSIGLVHMAQAPATLEASLRAADMACYMAKEKGRNRIQVYHSDDSELSMRFGEMAWI 552

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGL-EALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + L +A+E +   L    I  L   E  G  E L++        I    F+  AE   ++
Sbjct: 553 QRLHVALEENRFCLYAQEIAALTALEGQGHVEILLRLQDESGRTILPDSFIPAAERYGLM 612

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPS 826
            AI+ +++  + + I    D+    P+ +  IN++   + D++  E +Q L  +    P 
Sbjct: 613 TAIDRWVVRNVFQVIRQCLDEGREGPLSMCAINLSGSSIGDDKFLEYLQRLFVEYSIPPR 672

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I    +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K +GS
Sbjct: 673 LICFEITETSAIANLGSAIRFINELKGLGCKFSLDDFCAGMSSFAYLKHLPVDFLKIDGS 732

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +          A++  I  +   +    IA+ +   +  + L  +G DY Q   +  P 
Sbjct: 733 FVKDMLDDPVNRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQ 792

Query: 945 --GFNSILKLLKERFPLVKNT 963
               +S+ +      PL+   
Sbjct: 793 VFTCDSLQRQRIAARPLLHRA 813


>gi|115360028|ref|YP_777166.1| RNase II stability modulator [Burkholderia ambifaria AMMD]
 gi|115285316|gb|ABI90832.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
          Length = 667

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 122/545 (22%), Positives = 242/545 (44%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFAS 178

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R     E  +   +    +        S S  D    I    D+TE++ + + +   A 
Sbjct: 179 NR-SFAVERYINTVNGPRLFQFRNKFVQSGSGADEQYLICSGIDVTEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   L    TD   +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDMLTGLPNRHAISERIGAALAADRTDMRGQVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   +  + + +  PI+L   EI  
Sbjct: 298 VSTIISGCLPSGATLARLGGDEFLVLFEHGTRP-LLEATSQIILERLRTPIHLGLMEIYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A +     +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ L   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDLASGDVRSVEALIRWQSPDRGLVAPIEFIHFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + + +N++++ L D  +     ++++     PS + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGVRVAVNVSARQLQDMNIVHQFASILASAGLKPSLVDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES  + + E +  L+   R++G  + LDDFGT  S LS L  +P D++K + S +TG  
Sbjct: 535 TESSFIEDEETAHELMKEFRQLGAKIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFITGID 594

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +AK +   ++A+ +    + + L ++  D+ Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLAKALSFAVVAEGVETPGEAEFLKQVDVDHAQGFYFARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 GWLAE 659


>gi|330810256|ref|YP_004354718.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378364|gb|AEA69714.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 692

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 205/435 (47%), Gaps = 7/435 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D LTG+PNR    DR+   +            +M ID+D +K +ND  G
Sbjct: 254 ANRELTQLALHDPLTGLPNRVLLADRIDQAMHRVQEQGGC-FALMFIDLDGFKPVNDAFG 312

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L  +  R+ E L+  D LAR+ G+ F  +L+           A      IA  
Sbjct: 313 HHMGDLLLRDVALRLREDLRSQDTLARIGGDEFV-LLVQLAEPDDALRLAARQVGLIART 371

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + + ++ ++AS+G A +  +  ++ E+L NA+ AMYHAK  G N    F   ++S   
Sbjct: 372 FRVADHDLQISASVGIALYPGNGQSAEELLMNADAAMYHAKGAGKNGYSFFDASMNSNAR 431

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL +AVE  +  L Y P     +   VG EAL++W HP  G +    F+ +AE
Sbjct: 432 KQLQLLQDLRIAVEQRQFSLYYQPKFDAANGRPVGAEALLRWSHPTQGLLMPDTFIDLAE 491

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W          I +N+++       L + +   +    
Sbjct: 492 KTGLIIPIGEWVLNEACRQMREWY-VLGYTDWRIAVNLSALQFCHTGLVQSVAKALETHQ 550

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L +L  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 551 LPANSLTLEITETTAMSDADASMTVLQQLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 610

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  ++    LT++GCD +Q   +
Sbjct: 611 IDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETDMQQDFLTQLGCDSLQGYLL 670

Query: 941 ASPLGFNSILKLLKE 955
             PL     +  +++
Sbjct: 671 GHPLPAERFIHDIRQ 685


>gi|309790722|ref|ZP_07685272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
 gi|308227253|gb|EFO80931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oscillochloris trichoides DG6]
          Length = 816

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 138/483 (28%), Positives = 246/483 (50%), Gaps = 7/483 (1%)

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQD 536
           +L   F++  AD    W        ++   ++ R+  + ++ +  ++K  E +   A  D
Sbjct: 327 QLTRRFQLYRAD-APGWQTPLAVRGNDEIAELTRWFNLFSESLQVRQKIEEQLRHQATHD 385

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR  F D+L   L  +   +     V+ +D+D++K +ND LG A GD VL+   
Sbjct: 386 ALTGLPNRMYFSDQLAITLAKNLAGEECTAAVLFLDLDRFKIVNDSLGHAAGDQVLIITA 445

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           RR+   ++  D LARL G+ F I+L   N + +    A  +R+ +  P  +   E+ + A
Sbjct: 446 RRLRAAVRGGDTLARLGGDEFAILLSQLNGTDEAIQIADRIREELGAPFEVQGVEVALRA 505

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA 714
           SIG A  +S+     ++L+ A+ AMY AK  GG     F   +     + + ++ DL  A
Sbjct: 506 SIGIAMISSTYSNPDDLLREADTAMYRAKAAGGTRYMIFDDVMHQQSMEILRLEADLRHA 565

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   EL++ Y PIIRL +  I G EAL++W HP+ G +   +F+ +AEE  +I+ I++++
Sbjct: 566 ISRHELHISYQPIIRLDNGAIQGFEALVRWQHPERGEVKPRDFLPLAEETELIQQIDMWV 625

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L     D+  W +      + I +N+++++  +  L E +QA+I +       I+L  +E
Sbjct: 626 LRSACADLRHWHEA-GHTTLGISVNLSARNFQNMRLVEQIQAIILEAGVPAKSIQLEITE 684

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893
             +M + ER+   L +L  +GI + +DDFGT  S L++L  +P ++VK + S +   +  
Sbjct: 685 RAIMTDTERTISTLEQLSDLGIHIAIDDFGTNYSSLAFLKRLPANSVKIDRSFVNDISTS 744

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                +  +II M   +   IIA+ +      + L+  GCD  Q +  + P+  N +  L
Sbjct: 745 IDAATLTSAIIAMGHVLGLKIIAEGVEQSEQQEFLSNHGCDLAQGNLFSLPIRANQVTNL 804

Query: 953 LKE 955
           L  
Sbjct: 805 LAS 807


>gi|212636336|ref|YP_002312861.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557820|gb|ACJ30274.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 744

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 128/594 (21%), Positives = 246/594 (41%), Gaps = 33/594 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +       +LA+    +   S  +R            +   D     +   P     LG 
Sbjct: 165 LELISEAALLASLAIERDRSSRFQRLCGGIFKQMPLAILITDANGTVIDANPSFFNTLGS 224

Query: 441 ASGSMHGPIRNWL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
               +       +         +H         +            Q E   R ADN   
Sbjct: 225 TQSELSEFAPQLVFGESSEKELVH---------LFQQIKSGNT--WQGELLGRRADNTMF 273

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              + +    ++      Y  I  DIT++K + E I   A  D LT + NR    +++  
Sbjct: 274 CADVNVTAFKDTGETEYSYAWIFADITDKKSAAEIIHYQAKFDPLTQLVNRPYLFEKIEQ 333

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +++S  + N   + +++D+D +K+IND LG  +GD+VL+ +  RI   +   DIL RL 
Sbjct: 334 QINMSKLNPNACFSFILMDLDNFKQINDSLGHKLGDEVLIQVAERIKGCMGPNDILGRLG 393

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSE 672
           G+ F +I+  E  S  ++     + + I+    L   + +    S G + +     +  +
Sbjct: 394 GDEFALIIPDEVCSEVLSKLVQQLNQVISQEYLLDSHQRVFTRLSAGISRFPQDACSLEQ 453

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +L  A+ A++ AK +G N    F             +   L LA+EN    L Y PI+  
Sbjct: 454 LLNCADQALFCAKEQGRNQFHFFNDQMQSDAERTAKLTNALKLAIENDAFELHYQPIVCA 513

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               I  +EALI+W H     +   EF+  AE   +I  +  ++     + ++ ++    
Sbjct: 514 KQHRIRHVEALIRWRH-DGRLVRPDEFISAAEASGLIIELGRWVRVEAMKTLLEFQAL-- 570

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISK-------TLYSPSRIKLSFSESVVMGNPER 843
              I + IN+++ +   + L + +   I++       T +   R+ L  +ES++M     
Sbjct: 571 ELDIGMSINVSTFEFWSHNLQDCLINSITETATKICSTGFPFHRLTLEITESLLMKEQVH 630

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSI 902
               L +LRK+GI + +DDFGT  S LSYL   P D +K + S +    +K+  A++ ++
Sbjct: 631 LINSLSQLRKLGIKIAIDDFGTGYSSLSYLSEFPVDIIKIDKSFIRDVNDKKQAALVSAV 690

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +++ +   +  + +   + +  ++    D IQ      PL   ++L++L + 
Sbjct: 691 VALSRALNLDVTVEGVESHLQLAFVSEKEVDSIQGYFFHKPLEKTALLEVLTKH 744


>gi|316934696|ref|YP_004109678.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315602410|gb|ADU44945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 673

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 143/688 (20%), Positives = 270/688 (39%), Gaps = 59/688 (8%)

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIAR-------ITLASIVLYYTYFIIYHGMKGYE 335
                +  A +  L  ++ Y  + +  ++        +   +                  
Sbjct: 12  SLGMIALAAVLCALGVVASYGGLRSIRVSEGKLRRHWMWATAPAATSAVAAAAALALLVA 71

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
                 P W L  +    +                     V + +L G      +     
Sbjct: 72  SDAPSAPIWALGLMTGSVIATTCFGM------------MAVWLNLLAGRRTRLTLAERDM 119

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWL 453
               I +D  R              +D              I G+  G       +   L
Sbjct: 120 LLDAIVNDTAR----------GFCLFDAGGRLQLWNEAFLDIYGIPPGRDIAGKSLLRIL 169

Query: 454 PYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +        D      +  + V      +  + R    D +     IRI      NG 
Sbjct: 170 ALMRSAGNFVTDPGQLIELRAALVSRGPTSVVADLR----DGR----HIRIHLKRLPNG- 220

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              +I    DIT+ K++ +     A  D  TG+PNR +F +R+   ++ +   D     V
Sbjct: 221 --GWIAKHVDITDHKQAEQRFAYLALHDVATGLPNRAAFNERIVASVEQARRFDG-SFAV 277

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + + ID++K+INDV G AVGD VL  + RR+ +   +   LAR  G+ F I+   +  + 
Sbjct: 278 IRLGIDRFKEINDVFGQAVGDAVLAEMARRLADTCHWG-FLARPGGDEFSIVTPPDAAAD 336

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--H 686
            I D    + +       +    I V A+ G + +      +  ++ +A++A+Y AK   
Sbjct: 337 SIQDVCRQLARLCDSEFEVDGHRIRVGATAGVSVYPRDGEDADALIAHADVALYRAKTEQ 396

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           RG   +    +     ++  ++ +L +A+E  +  + Y P       EIVG EAL++W H
Sbjct: 397 RGTVCLFEPAMDLQIREKRALQRELAVALEQRQFEIHYQPQ-ATTSGEIVGFEALLRWRH 455

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +S + F+ +AEE   I  I+ ++L  +  +  SW       P+ I +N +  D  
Sbjct: 456 PIRGMVSPALFVPLAEETGQIGPIDEWVLRSVCTEAASWAK-----PLAIAVNFSPLDFR 510

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             ++   +  ++ +T   PSR+++  +E V++ +   +  +L +++ +G+ + +DDFG  
Sbjct: 511 RLDVPALILQVLLETGLEPSRLEIEITEGVLIDDFSGAIAILRKIKNLGVRVAMDDFGAG 570

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PFD +K + +         +  AI+ +I+ +A+ ++  +IA+ +  E  +
Sbjct: 571 YSSLSYLQSFPFDKIKIDQAFTRKLEINPETAAIVEAILSLARTLKLPVIAEGVETESQL 630

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952
             L R GCD +Q   +  P        L
Sbjct: 631 AFLARAGCDEVQGYLIGRPQPITHYRAL 658


>gi|84387275|ref|ZP_00990296.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           12B01]
 gi|84377922|gb|EAP94784.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           12B01]
          Length = 679

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 135/572 (23%), Positives = 253/572 (44%), Gaps = 24/572 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIR 450
                ++ +     +         D +    +  D  +++ P  A +LG  S +      
Sbjct: 118 ENQVLARSLEESEAKFHKLSHLLPDGLLL--VESDYILSSNPAAARLLGFNSTTELIGEE 175

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN---G 507
               +I    +  F   L S +            +            +++   +S    G
Sbjct: 176 LGRLFIDEQTKTVFNNNLSSIISESG--------LVCLTGARCGFERKVQLNIDSTTILG 227

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
              + + I +     K+       +A+ D LT + NR  F  RL   +      ++    
Sbjct: 228 SNTQLVLIQDAQETTKQYTPANSEDAYIDALTKLYNRVGFTKRLEQFI-----QNDTPVV 282

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +DID +K IND LG  +GD V+  +  R+  LL    ++  L G+ FGIIL    + 
Sbjct: 283 MLYLDIDNFKNINDSLGHHIGDKVIKEVASRLKRLLPRQAVIGHLGGDEFGIILPEPEHQ 342

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   I  P +L      +  SIG  S+      +  +L+NA+ AMY AK R
Sbjct: 343 RTPEMLAEKIISLINQPFDLHHFSKRLACSIGSVSFPQDGTDARILLQNADTAMYEAKDR 402

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W 
Sbjct: 403 GRNRLIKFNEQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFTINGAEALVRWK 462

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G IS + F+ +AE   +I+ +   ++  +   +  W+ Q  + P  + IN++ +  
Sbjct: 463 HPVEGYISPAAFIPVAERAGLIEQLGRVVMREVFATVKRWKMQ-GILPGRVAINLSPEQF 521

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +L + ++ L+  T   PS I    +ES VM + E +  +L  ++K+G +L++DDFGT
Sbjct: 522 GNPKLIDYVEKLLRSTELDPSAITFELTESAVMSDSEHTLQMLNAIKKLGFALSIDDFGT 581

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   P D +K + + ++      K+I ++ +II + K+++ T++A+ +     
Sbjct: 582 GYSSLSYLARFPIDELKIDRAFISDIDTLPKQITVIENIINLGKSLDLTVVAEGVETSEQ 641

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L+ + C  IQ  H   P     + +L  +
Sbjct: 642 ATLLSNLNCSSIQGFHFYRPQPKQDVEELFAQ 673


>gi|33602292|ref|NP_889852.1| signalling protein [Bordetella bronchiseptica RB50]
 gi|33576731|emb|CAE33809.1| probable signalling protein [Bordetella bronchiseptica RB50]
          Length = 691

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 123/433 (28%), Positives = 215/433 (49%), Gaps = 8/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E ++  A  D LT +PNR    +RL   +  +        +++ ID+D +K IND  
Sbjct: 254 QANEELVQMALHDTLTKLPNRALLDERLKQAIIRATAAGRG-FSLLFIDLDGFKAINDAY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV + +RI   ++  D +ARL G+ F  +L    +    A  A  +  ++ +
Sbjct: 313 GHGAGDLLLVEMAQRIKRAMRPQDCVARLGGDEFV-VLADLPDPNDAAGLAERLIDTLTV 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---VSSF 700
           P  +   E++V ASIG A +      +S +L +A+ AMYHAK     H  SF    ++  
Sbjct: 372 PAEVQGHEVSVAASIGIALFPGDGADASTLLAHADAAMYHAKRLSQTHRVSFFEPSMNED 431

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +++ + +DL LA+  ++L L Y P        +VG EAL++W+HP  G I  + F+ I
Sbjct: 432 ALEQLQLLQDLRLALPRNQLELHYQPKFVAPAGPVVGAEALLRWNHPTRGVIGPTVFIPI 491

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I +I  ++L+   R +  WRD        + +N++S      +L + ++A +++
Sbjct: 492 AERTGLIFSIGAWVLDEACRQMRQWRDM-GHADWTVAVNLSSLQFSQPDLIDSIRATLAR 550

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + +  +ES  M + E S  +L  L ++G+S+++DDFGT  S L YL  +P   
Sbjct: 551 HGLPPRCLAIEITESTAMRDAEASLAVLRELAELGVSISIDDFGTGYSSLLYLKRLPATE 610

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AI+ +II + + +   I+A+ +        LT MGCD +Q  
Sbjct: 611 LKIDRGFVNQLEHDNEDAAIVSAIIALGQKLNLKIVAEGVETLAQQSFLTEMGCDSLQGF 670

Query: 939 HVASPLGFNSILK 951
            +  PL     L 
Sbjct: 671 LLGRPLPAAEFLA 683


>gi|114705030|ref|ZP_01437938.1| hypothetical protein FP2506_08836 [Fulvimarina pelagi HTCC2506]
 gi|114539815|gb|EAU42935.1| hypothetical protein FP2506_08836 [Fulvimarina pelagi HTCC2506]
          Length = 809

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 128/567 (22%), Positives = 248/567 (43%), Gaps = 38/567 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +  + +  ++ + A+      +   D  +  +          G    ++  P   +L  
Sbjct: 255 LASELEAKQDQMAAALNNMTQALCMLDGKKKLLVWNEVFTYYFG--EHTVGTPSHRFLKD 312

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                       L          L  E        +   +  R              +  
Sbjct: 313 ------PRLSQPLPR---NETSVLMTE----TERGEIMEVKRRGLAGR-------GLLIT 352

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+T++++  E +   A  D LT +PNR+ F + +  +L     +      ++V+D+  
Sbjct: 353 FEDVTDRQRIAEQLEHLAAHDALTDLPNRRRFGEEIEAVLGKRREN----CALLVLDLRN 408

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  +GD VL  +  R+        I+ARL G+ FGI++ +  ++  +  FA 
Sbjct: 409 FKAINDTYGHPIGDAVLSLVGDRLVAACGPRAIVARLGGDEFGILVTATKDAEWLETFAE 468

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT----SSKITSSEMLKNAELAMYHAKHRGGNH 691
           ++  +   P  +  R I    SIG A+ T     +  ++  +L+N +LA+  AK  G   
Sbjct: 469 SIVSAFDEPFEVEGRRIPTGLSIGCAAITKTEREAGASADLLLQNCDLALNAAKSAGRPG 528

Query: 692 VESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F       + DR  +++DL +A+ N E  + Y P +    + + G EAL++W HP+ 
Sbjct: 529 YRVFDQEMRDRQHDRREMEDDLRMALRNEEFEVFYQPFVDSGRKAVSGFEALLRWRHPEK 588

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS   F+ +AEE  +I+ I ++ ++   R+  SW        + I +N +       +
Sbjct: 589 GLISPGVFIPLAEETGLIEEIGVWCMQTAFREAASW-----NTDMTISVNFSPVQFKSAK 643

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E + A +  +   P R+++  +ES+ +   E     L   R  G+++++DDFGT  S 
Sbjct: 644 LVEDVDAALRASGLDPRRVQIEVTESLFIDESENILSTLKTFRDRGLTISMDDFGTGYSS 703

Query: 870 LSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           L YL   PFD +K + S +   +  + IAI+RS+I +++ ++  ++A+ I     ++ L 
Sbjct: 704 LGYLSRFPFDKIKIDQSFVRDLSRPENIAIVRSVIGLSRALDMKVLAEGIESREQMEILY 763

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
             GC  +Q    + P+  + +  ++ E
Sbjct: 764 AEGCREMQGFFFSRPVPASEMPLVITE 790


>gi|207739751|ref|YP_002258144.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206593133|emb|CAQ60039.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 853

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 142/582 (24%), Positives = 257/582 (44%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 274 VGALAKLLRLEGEYRQARDLRDQYQLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGA 333

Query: 444 SMHGPIRNWL-PYIHINDRDNF-RTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRI 499
           S  G  R  L   +   D     R    S +  R GR        + A + Q  W+   +
Sbjct: 334 SWKGRTRLMLGDMMLAEDGSILPRAAWPSTLAARTGRAISNVVVGMPAGNGQIVWLRESV 393

Query: 500 RPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +      +  I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 394 LPMFSQDSAAPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 453

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ + +D +K +N+ +G  +G+ VL     RI   +    +LARL G++F 
Sbjct: 454 STGQ---AALLYVGLDHFKTVNEAMGHHIGNQVLNVAAHRIRADVGQRALLARLGGDQFC 510

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +       +    A  M  ++A P    ERE+ ++AS+G A +      ++ ++  AE
Sbjct: 511 VAIDV---PEQAETLAQQMLDALAKPFPGGEREVHLSASVGVAMFPEDGSDAASLVSRAE 567

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+    + LVY P   L   E+V
Sbjct: 568 AAMYRAKENGRNRMARYSRTLETQILRRFTLNERMRRALGRGHVRLVYQPKYALATRELV 627

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L +      +W          +
Sbjct: 628 AVEALMRWSDPELGAVSPTEFIAVAEESGYILELGRWALLQACSQGQAWERDFGFAG-RV 686

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   +   +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 687 AVNVSARQCDAGVIERDVDEALGVSGLRPSRLELELTESVLLADRLSTQRLLTSLAARGV 746

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            + LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 747 RIALDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 806

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ R
Sbjct: 807 AEGVETPEQSAFLAAHACDEVQGFLFGRPLEVPAMESLLRSR 848


>gi|66045722|ref|YP_235563.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256429|gb|AAY37525.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 703

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 110/435 (25%), Positives = 207/435 (47%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  DNLTG+PNR    +R+   +  +         +M +D+D +K +ND  
Sbjct: 254 QANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L   D LAR+ G+ F  +L+   +       A      +  
Sbjct: 313 GHHTGDLLLRQVALRLRNSLHRRDTLARVGGDEFV-LLVELQHPEDALAVARRQVNEVGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFIIGEHQLQISLSIGICVYPGNGSTQHELLINADAAMYHTKAAGKNGYSFFDVSMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    M    VG EAL++W+HPK G +    F+ +A
Sbjct: 432 RNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPKQGVLGPDLFISMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L+   R +  W  Q       I +N+++       L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYSHWRIAVNLSALQFCHAGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILKLLK 954
           +  PL     L+ ++
Sbjct: 671 LGYPLPAEQFLEEIR 685


>gi|253999666|ref|YP_003051729.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253986345|gb|ACT51202.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 765

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 209/443 (47%), Gaps = 18/443 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR  F  +L   +  S         +M +D+D +K+IND LG ++GD
Sbjct: 317 WKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQ-PLVLMFLDLDNFKQINDQLGHSIGD 375

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +LV    RI  + +   +LARL G+ F I+L +  N  ++      + + +++P  +  
Sbjct: 376 KLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQNQQQVEWLCERILRQVSLPFTIEN 435

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
             + VT SIG AS+         ++K A+ AMY AK  G N  + F  S     + ++ +
Sbjct: 436 HVVYVTTSIGIASFPEHSRDVETLMKYADQAMYEAKRLGRNRYQFFSPSMQELAAHKLQV 495

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL + Y PI+ L   EI   EAL++W HP  G +   EF+ +AEE  MI
Sbjct: 496 SNDLRHALNRHELVMYYQPIVDLATNEIHKAEALVRWQHPTRGLVPPFEFIPVAEETGMI 555

Query: 768 KAINLFMLERIARD----IISWRDQANMPP---------IFILINIASKDLLDNELCEGM 814
             +  ++  + ARD    +       + PP           + IN++      ++  +  
Sbjct: 556 NRMGDWVFRQSARDTVTLVQESLASRSAPPEGNVVDATIFQVSINVSPLQFQSSQELQTW 615

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           QA + +       + +  +E +++   ++ +  L + R  GI+ ++DDFGT  S L+YL 
Sbjct: 616 QAYLDQIGLPAECLAIEITEGLLLEASDQVKATLTQFRDAGIATSIDDFGTGYSSLAYLK 675

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D VK + S +         + +   I+ MA  +   +IA+ +  E  ++ L R GC
Sbjct: 676 KFHIDFVKIDRSFVQNLGAGNDDMVLCEVIVDMAHRLGMRVIAEGVETEAQLELLKRAGC 735

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D+ Q    +  L F+  +  +++
Sbjct: 736 DFAQGYLFSPALPFDQFMTFVRD 758


>gi|15966662|ref|NP_387015.1| hypothetical protein SMc03178 [Sinorhizobium meliloti 1021]
 gi|15075934|emb|CAC47488.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 882

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 136/617 (22%), Positives = 263/617 (42%), Gaps = 41/617 (6%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVR 425
           A  G +++  +++   ++    A     +      +    R  +A+  S   +W+ D+  
Sbjct: 272 AFGGLMIVAPMIVAGRLMAERQANFRALRQSKDQLQELSHRLRIALDTSKIGIWELDVDS 331

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +     +  + G+   SM     +W   +H +D           +    G    EFR+
Sbjct: 332 GTLLWDSRMKELYGI-GSSMREVYEDWRNTLHPDDLARAEAEFAGTLAT-GGAYNTEFRI 389

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---------------------EQKK 524
           R  D +   +       + +NG+  + +G+  D+T                     E + 
Sbjct: 390 RLPDGEVRHIRAIGSTYAGTNGN-RKIVGVNWDVTADVKTRATLSEAKRLAEAHSAELEA 448

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +  NA  D LTG+PNR+     L         D   + ++  ID+D++K+IND +G
Sbjct: 449 ARHRMEFNALHDPLTGLPNRRFLDQILFD--RSRRADAKAKISIFHIDLDRFKQINDTMG 506

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD++L      + +  +  D +AR+ G+ F II  S       A  A  + +++++P
Sbjct: 507 HAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASGGCDEDAA-LASRVIEAMSVP 565

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
           +   ++E  +  SIG A+ T +    S++L NA++A+Y AK RG N  E+F     +   
Sbjct: 566 VRYEDQECRIGVSIGIAAQTDAADDLSQVLVNADIALYEAKRRGRNRHETFTGALKTAVL 625

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                 +++   +E +E    + P       +I+G+EAL +WDHP  G +    F+  AE
Sbjct: 626 QTKQTADEILRGLEQNEFVAYFQPQFCPSSLDIIGVEALARWDHPTKGLLGPHAFLKTAE 685

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           ++ ++ AI+  +LE+    I  W       P  + +N++   L D  L   ++ L     
Sbjct: 686 DINVVAAIDQKILEQALFQIYRWEANGIYVP-KVSVNLSYPRLRDEGLIARLEEL----S 740

Query: 823 YSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               R+     ES+    N       + R++++GI + +DDFGT  + +  L  +    +
Sbjct: 741 IPEGRLSFELLESISFDENDVTVMSNIRRIKELGIDIEIDDFGTGYASILSLLKLTPRRL 800

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +  L+     +     ++ SII +  ++   +IA+ +      + L  M C  +Q   
Sbjct: 801 KIDRQLVLPILSSPAERRLVASIIDIGTSLGIEVIAEGVETLEHARILKEMECHGLQGYA 860

Query: 940 VASPLGFNSILKLLKER 956
            A P+  N +   + ER
Sbjct: 861 FARPMNANDLATFVFER 877


>gi|21113075|gb|AAM41249.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
          Length = 1029

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 132/587 (22%), Positives = 247/587 (42%), Gaps = 10/587 (1%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             ++     +Q+V         I    E  +           + ++   R+  T +   I 
Sbjct: 440  ALVRVLGQLQNVTEQRQTDALIRWRTELLNRVSALGKIGGCEIEVDTRRMQWTEECYRIH 499

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            GL   ++   +   L     + RD F   L   V       Q E        Q  W+ + 
Sbjct: 500  GLRKENI--TLEQALSLYTQDSRDAFEAALLRIVDGGLPE-QLELCFYRNSGQRVWVQVL 556

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            I       G   RY+ +  D++ ++++ E I   A  D LTG+PNR    ++    +  +
Sbjct: 557  IELDR-REGLPPRYVALFRDVSREREANERIELLAHYDRLTGLPNRFLLREQAENAIREA 615

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                 +   +++ID+D +K IND  G A GD++L   + R+ + L+  D+  R S + F 
Sbjct: 616  HERGQV-MAMLLIDLDGFKSINDSFGHATGDNLLKLASSRLHQHLRNSDLFGRFSDDEFI 674

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            ++L   +        A  +  ++  P+      + + ASIG A           +L+ A+
Sbjct: 675  VLLRDLSEPEDAGHVARKLISALGEPLRKDHVTLKLGASIGIALQGEGLSDFDSLLRAAD 734

Query: 679  LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
             AMY AK  G N    +          R+ ++  L  A+E  E  LVY P++  + +   
Sbjct: 735  AAMYAAKDSGRNTFHYYSQDVLLRAQRRLELEHALHGALEREEFTLVYQPLVNTVGDTSP 794

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             +EAL++W+ P  G  S +EF+ IAEE   I  +  +++    R  + W          I
Sbjct: 795  AIEALMRWNRPGHGPCSPAEFIPIAEECGEIVRLGEWVIGEACRQAVVWDRAGLHFS-RI 853

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N+++  L +    E +  +     +SP+R++L  +ES ++ + +  R       + G+
Sbjct: 854  AVNVSAVQLRERGFAERVLEICRDNGWSPARLELELTESALIRDSDSLRRCFELFEQNGV 913

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             L +DDFGT  S L YL   P   +K + S + G         + ++I+ +   +   ++
Sbjct: 914  LLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQGMLDDANTAEVTQAIVHLGHALGMQVV 973

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            A+ +    +   L + GCD IQ    + PL    + + L+E    ++
Sbjct: 974  AEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRDMAQWLREAEAGMR 1020



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH +D     
Sbjct: 209 RWEIGLDSADHGLWDWDIAADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPDDHAQVS 268

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   S+G  LR +G   D+   K 
Sbjct: 269 AAVQAHLDGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTSDGRPLRMVGTHTDVHHHKL 328

Query: 525 SLEGILCN 532
             + +   
Sbjct: 329 LEQQLREQ 336



 Score = 68.4 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD ++D++  + D    LGLA   +H  +R+ L  
Sbjct: 329 LEQQLREQQAQLEEAQRIASMGSWGWDTLKDQLWVSQDFLQQLGLADLRLH-SVRDILRL 387

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +      + R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 388 LAGPSVAHLRSAWRK-IKHEGMPVHFELEINGRLGVNPHHLRVWAQPVFDGDGALVRVLG 446

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 447 QLQNVTEQRQTDALIRWR------TELLNR 470


>gi|317402690|gb|EFV83243.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [Achromobacter xylosoxidans C54]
          Length = 858

 Score =  459 bits (1182), Expect = e-126,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 219/440 (49%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++   I   AF D LTG+PNR   L +    +  +   +  R  V+ +D+D++K++N
Sbjct: 421 EREEARARIRQLAFYDELTGLPNRNLLLAQAEQAIARAEP-ERKRVAVLFLDLDRFKQVN 479

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  + +R+  L +  DI+ RLSG+ F +++       ++   A  +  S
Sbjct: 480 DTLGHPIGDALLRDIAQRLRRLARATDIVGRLSGDEFVMLMPDF-EHGRLTAAAEHILVS 538

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           ++ P       +  + SIG + +  +      +L++A++AMY AK  G N +  F   ++
Sbjct: 539 LSHPFVAGGITLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFSAEMN 598

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++  L  A+E   L L Y P + L +  + G+EAL +W HP  G+IS + F+
Sbjct: 599 RQAQERLALEAALRDALEGRALRLHYQPQVGLKNGSLYGVEALARWRHPTLGDISPARFV 658

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + +      +  WR+     P  + +N+++ +  +  L   + A +
Sbjct: 659 PLAEECGLIGDLGDWAVREACSQLSIWRNNGLRVP-SVSVNLSATNFHNLNLPRMIAATL 717

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++   + S + L  +E VV+     +   +  L ++G+ L++DDFGT  S L +L  +  
Sbjct: 718 AEFGLAASDLMLEITEGVVLDATAGTLRTIAELHRLGVRLSMDDFGTGYSSLGHLRRLIV 777

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S + G        A+  ++I + +++   ++A+ I  E   + L   GC   Q
Sbjct: 778 DELKLDRSFVQGLESDDAARALTSAVIRIGESLSLPVVAEGIENEEQRRFLIEQGCAAGQ 837

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL    + + L+ R
Sbjct: 838 GFLFSPPLPAGDLEEWLRAR 857



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 4/142 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA- 441
               I  +            +     L +  +G+ V         V        +LG + 
Sbjct: 123 EVRRIAVISRKSIADAERQEEIRLLLLGINETGNAVAVSGRDGRIVYVNDGFQRMLGFSR 182

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           + ++   +   L     +     R  LD  +  R G    +  V     +  W+ +    
Sbjct: 183 ADALEQELGELLAGGRPD--GGTREELDRRIACREG-YHKDVLVYDRGGKPLWVSVMANS 239

Query: 502 MSNSNGDILRYIGIANDITEQK 523
           + +  G ++  + +  DIT  K
Sbjct: 240 VFDERGSLVNIVDVLTDITPTK 261



 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 4/102 (3%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--R 475
           ++D+D     +    +    L  +   + G   + L      D        +       R
Sbjct: 33  LFDFDAAGSLLNANDNFLAALDYSRADVAGLRHDLL--CDSMDEGKGIASAEQIWARLRR 90

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                   R R       W+     PM + +G++ R   I+ 
Sbjct: 91  GEFFSGTCRYRKRSGTSVWIEATYLPMRDESGEVRRIAVISR 132


>gi|217971408|ref|YP_002356159.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217496543|gb|ACK44736.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 706

 Score =  459 bits (1182), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 233/556 (41%), Gaps = 8/556 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S  +  S + V+  D     +     +  I G ++  +      +L          
Sbjct: 153 KEILSTTLEESAEAVYITDSDDQILAVNKAMCRICGYSAEQLISKTPEFLELR---SHHL 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                      +RG  Q E   R +D          R +   +G     + I +DI+ +K
Sbjct: 210 GEETECQIALKQRGFWQGETWKRRSDGSNFPAWQSSRKIITEDGAHYN-VNIFSDISTKK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A  D LTG+PNR      L + L+   TD      +M +D++ +K IND  
Sbjct: 269 LLETQLTTRAMYDTLTGLPNRFHLKQILNSALEKLKTDPLALGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFES 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
           P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +   L  A    +  L Y  I+ L   + +  EAL++W         +++F+ + E
Sbjct: 449 LKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQTIAAEALLRWQKSPTEYYDAADFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I +I  ++LE+       WR         I +N++   L   +  + +   +    
Sbjct: 509 ETGLIVSIGQWVLEQACVQAALWRAHN-QADFRISVNVSPLQLEHLDFIDQVINALDMAN 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE++RL L R++ +G+S+ +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +        E     +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNEVSGQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK-LLKER 956
            P   ++  +  L E+
Sbjct: 688 YPSSVDNFTQTFLAEK 703


>gi|284990675|ref|YP_003409229.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063920|gb|ADB74858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 686

 Score =  459 bits (1182), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/559 (24%), Positives = 261/559 (46%), Gaps = 14/559 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +         +   R +     S       +             +++GL +  + G    
Sbjct: 128 SERVLRATAEAHERRLATLTERSPVPTVLSEQGMRLAHVNDAFCSLVGLQAEQLLGT--G 185

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W+  +H +D D+    + + +G R GR++   R+   D      ++R+  +    G    
Sbjct: 186 WMATVHPDDLDDVIEQVVAVLGGRDGRIRA--RLVRGDGGERTTVLRLSQLFTP-GVGAG 242

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           ++G   DIT++      +   A  D LTG+PNR    + +             R  V+ +
Sbjct: 243 FVGTIEDITDRLAFEARLAHQAHHDPLTGLPNRTLLAEHVAERF----RPGTGRLAVISL 298

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D    +N+ LG A GD++LV +  R+   ++  D++AR  G+ F +I     +     
Sbjct: 299 DLDDLTVVNESLGHAAGDELLVEVATRLRATVRPGDLVARSGGDGFVVIGEDL-DEDAAV 357

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGG 689
             A  +  ++A  + L   ++   AS+G    T+    + +++++ ++A+  AK   +G 
Sbjct: 358 TLAERIAAALAQSVRLGGVDVRPHASVGVTVQTTGHHAAEDLIRDGDIAVCQAKAGGKGR 417

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             V   R  +   D++ +  +L  A+E  E+ L+Y PI R  D   V +E+L +W HP  
Sbjct: 418 ISVLDERARAEARDKLRLVAELREAIERREITLLYQPIFRADDGAPVAVESLARWHHPLR 477

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDN 808
           G IS + F+ +AEE  +I  + L +L+   R +  W        P    +N+++  L D 
Sbjct: 478 GPISPTVFVALAEEGGLIGVLGLLVLDETCRQLAEWDRVLGGAAPQRANVNVSALQL-DE 536

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L   + A + +    PSR+++  +ES +M +P  +R +L +LR +G+SL +DDFGT  S
Sbjct: 537 HLHGHVVAALERHGLHPSRLQIEITESALMEDPSSARDVLDQLRDLGVSLAIDDFGTGYS 596

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            LSYL ++P D +K + S +    +    I  ++I +A++++ T +A+ +  E    +L 
Sbjct: 597 SLSYLRHLPVDVLKVDRSFVAELADGHPEIASAVIALARSLDLTTVAEGVETEEQAAQLA 656

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G  ++Q   +A P+  +
Sbjct: 657 DLGAGFLQGFALARPMTGD 675


>gi|329937967|ref|ZP_08287449.1| putative sensory box/GGDEF family protein [Streptomyces
           griseoaurantiacus M045]
 gi|329302924|gb|EGG46813.1| putative sensory box/GGDEF family protein [Streptomyces
           griseoaurantiacus M045]
          Length = 671

 Score =  459 bits (1182), Expect = e-126,   Method: Composition-based stats.
 Identities = 129/635 (20%), Positives = 253/635 (39%), Gaps = 94/635 (14%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---------------------- 447
           A   +   +   D     VT    +  +LG                              
Sbjct: 30  AFAEAPLAMAVVDREGRVVTANRALVALLGRTPSEARAGRTGSDADRASEAGRASEAGRA 89

Query: 448 ---------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                      R     + +             +  RR RL+   R++  D    W+ + 
Sbjct: 90  AEAAADDGLTGRAAADLVDLASDPRTWHAYREVLRGRRSRLRCTRRLKHPDGHSLWVQVT 149

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + P+  +       +    DI+ +++    +      D +T +PNR  F +RLT  L+  
Sbjct: 150 VSPLPPAR---QAVLLSVTDISARRELQARLRHLQMHDPVTRLPNRTLFFERLTAALEAE 206

Query: 559 ATDDNL--------RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--- 607
                         R  +  +D+D +K +ND LG  +GD +L ++  R+           
Sbjct: 207 DAGAAGADGAGGTGRIGLCYLDLDGFKAVNDTLGHRLGDRLLAAVAERLTRCAAEAGRGR 266

Query: 608 -------------------------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
                                    ++ARL G+ F +++     + ++A+ A +  +++ 
Sbjct: 267 SGADHGGDGTDAGTWPAADRALGAPLVARLGGDEFALLVEDSTGTDQLAELAESALEALR 326

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  L +R ++V+ASIG      +  T++ ++++A+  +Y AK  G      F       
Sbjct: 327 APFELADRRVSVSASIGVVERRVAGTTATALMQDADTTLYWAKADGRARWTLFDPERNAH 386

Query: 703 DR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +   L   +E  E  L Y P++ + D  + G+EAL++W HP++G ++ + F+ +
Sbjct: 387 RMTRQALASTLRPGIEQGEFALEYQPLVSMTDGRVRGVEALVRWHHPQFGALAPNRFISL 446

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALIS 819
           AEE   I  +  ++L    R    W+      PP+F+ +N+A + + D++L   +   ++
Sbjct: 447 AEEDGSIVPLGRWVLTTACRQARRWQLDHPDAPPLFVSVNVAVRQIWDSDLVADVARTLA 506

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P  ++L  +ES + G+  R    L  L  +G+ + +DDFGT  S L+YL  +P +
Sbjct: 507 ETGLPPHLLQLELTESALTGSAGRPLQALEALSDMGVRIAIDDFGTGYSNLAYLSRLPVN 566

Query: 880 TVKFNGSLMTG---------------------STEKRIAILRSIIPMAKNIETTIIAKDI 918
            +K +GS + G                     ++     I+ +++ +A  +  T+IA+ +
Sbjct: 567 VLKLDGSFVRGFQYEAPAAGGAAPEPGAEGAPASPADEVIVEAMVQLAHRLGLTVIAECV 626

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                   L  +GCD  Q    + P+  + I  LL
Sbjct: 627 ETSAQAARLRAIGCDTGQGWLYSRPVSPDRISDLL 661


>gi|78047597|ref|YP_363772.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036027|emb|CAJ23718.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 928

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/607 (22%), Positives = 250/607 (41%), Gaps = 12/607 (1%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
              +         +    +  G   +V ++G   +Q+V         I    E  +    
Sbjct: 315 INGLLGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLNRVSA 372

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                  + ++   R+  T +   I GL   ++   +   L     + RD F   L    
Sbjct: 373 LGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAALLRIS 430

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  Q E        Q  W+ + I       G   R++ +  DIT ++++ E I   
Sbjct: 431 DGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDITREREANERIELL 488

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR    ++    +  ++        +++ID+D +K IND  G A GD++L
Sbjct: 489 AHYDRLTGLPNRFLLREQAENAIREASERGQT-LAMLLIDLDGFKSINDSFGHATGDNLL 547

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+      +
Sbjct: 548 KLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKEHVTL 607

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710
            + ASIG A           +L+ A+ AMY AK  G N    +          R+ ++  
Sbjct: 608 KLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTYHYYSQDVLLRAQRRLELEHA 667

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  E  LVY P++  +D+    +EAL++W+ P  G  S  EF+ IAEE   I  +
Sbjct: 668 LQGALEREEFTLVYQPLVNTVDDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGEIVRL 727

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++    R  + W          + +N+++  L +    E +  +     + PSR++L
Sbjct: 728 GEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPSRLEL 786

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S + G
Sbjct: 787 ELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQG 846

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL    
Sbjct: 847 MLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRD 906

Query: 949 ILKLLKE 955
           + + L+E
Sbjct: 907 MAQWLRE 913



 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 108 RWEIGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPEDHAHVS 167

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 168 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 227

Query: 525 SLEGILCN 532
             + +   
Sbjct: 228 LEQQLRDQ 235



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD   D +  + D    LG+    + G IR+ L  
Sbjct: 228 LEQQLRDQQAQLEEAQRIASMGSWSWDSHHDALWVSQDFLQQLGMTQVRLQG-IRDILRL 286

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 287 LAGPSVAQLRSAWRK-IKHEGMPVHFEMEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG 345

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 346 QLQNVTEQRQTDALIRWR------TELLNR 369


>gi|261253856|ref|ZP_05946429.1| hypothetical protein VIA_003883 [Vibrio orientalis CIP 102891]
 gi|260937247|gb|EEX93236.1| hypothetical protein VIA_003883 [Vibrio orientalis CIP 102891]
          Length = 648

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 262/568 (46%), Gaps = 24/568 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     + S       + ++   +  D  ++  P    +LG    SM   +   L 
Sbjct: 91  LVRSLEESEGKFSTLTSLLPEGIFL--LEGDCIISANPAALRLLGF--ESMQDILGESLS 146

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN---GDILR 511
            + ++++       DSF+         E  +            +++ +++S    G   +
Sbjct: 147 RLFVDEKTKTVFS-DSFIEQLS-----ETPLTCLTGPRCGFERKVQLLADSTMVLGSDSQ 200

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + I +  + Q         +A  D+LTG+ NR  F  RL  ++      +     ++ +
Sbjct: 201 LVLIQDAESGQVTLSSSQHEDAHLDSLTGLYNRFGFTKRLEQLI-----HNETPLIMLYL 255

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DID +K IND LG  +GD V+  ++ R+  LL    +L  L G+ FGIIL   +N+  + 
Sbjct: 256 DIDNFKNINDSLGHHIGDKVIKEVSSRLKRLLPQQAVLGHLGGDEFGIILPEPDNNRMVE 315

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             +  +   I  P +L      +  SIG  ++      +  +L+NA+ AMY AK RG N 
Sbjct: 316 MLSERIISLINQPFDLHHFSKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNR 375

Query: 692 VESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EALI+W HP  
Sbjct: 376 LIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALIRWKHPVE 435

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS   F+ +AE   +I+ +   ++  +   +  W     + P  + IN++ +   + +
Sbjct: 436 GYISPGAFIPVAERAGLIEHLGRVVMRDVFATVKRW-KLQGILPGRVAINLSPEQFGNPK 494

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + M+ L+  T   PS I    +ES VM + E +  +L  ++++G +L++DDFGT  S 
Sbjct: 495 LIDYMEKLLRTTELDPSCITFELTESAVMSDSEHTLQMLNAIKRLGFALSIDDFGTGYSS 554

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   P D +K + + ++      K+I ++ +II + K++  T++A+ +  +     L
Sbjct: 555 LSYLARFPIDELKIDRAFISDIDTLPKQITVIENIINLGKSLNLTVVAEGVETQQQATLL 614

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + + C+ IQ  H   P     + +L  +
Sbjct: 615 SNLNCNSIQGFHFYRPQPRQEVEELFAQ 642


>gi|170736347|ref|YP_001777607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
 gi|169818535|gb|ACA93117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
          Length = 667

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 116/545 (21%), Positives = 235/545 (43%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFA- 177

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                  E  +   +    +        S S  D    I    DITE++ + + +   A 
Sbjct: 178 SNQSFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQYLICSGIDITEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   +     +      ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 298 VSAIISGCLPSGATLARLGGDEFLVLFEHATRP-LLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + I +N++++ L D  +     +++      P  + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGVRIAVNLSARQLQDMNIVHQFASILDGAGLKPGLLDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES  + + E +  L+ + R++G  + LDDFGT  S LS L  +P D +K + + +T   
Sbjct: 535 TESCFIEDEEAANGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAID 594

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +AK +   ++A+ +    + + L ++  D+ Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLAKALNFAVVAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 AWLAE 659


>gi|288935508|ref|YP_003439567.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Klebsiella variicola At-22]
 gi|288890217|gb|ADC58535.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Klebsiella variicola At-22]
          Length = 551

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/537 (24%), Positives = 235/537 (43%), Gaps = 15/537 (2%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            ++        ++         G  S  + G       Y             +  +  R 
Sbjct: 22  AIYMLSTDGMVISWNEGARRAKGYLSDEIIGCYFGLF-YSESEQLSGVPAK-NLEIALRS 79

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G+ + E      D    W  + I  + +    +L +  I  DI+EQK   + I   A  D
Sbjct: 80  GQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYD 139

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR  F +R+  ++     +D  R  +  ID+DK+K+IND+ G  +GD +L  + 
Sbjct: 140 ALTGLPNRVEFFERVEKLIT---GNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVA 196

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + + L+  +++AR  G+ F  +     +  ++  FA  +    +        E+ ++A
Sbjct: 197 GAVLKTLQKEEMVARFGGDEFVAVKP-FADEGEVDAFAARLWHCFSGKQTFAATEVVLSA 255

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG + +       + +L N++LAMY AK    + +  +        R    +  D+   
Sbjct: 256 SIGISVYPEDGTDINTVLSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMAADIRRG 315

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E  L Y  I  + D  I G EAL++W HP+ G I    F+ IAEE   I  +  ++
Sbjct: 316 IHAGEFSLHYQAIRNIKDRRITGYEALLRWQHPQLGPIPPDVFIPIAEESGAIVPLGYWV 375

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++  +              + +NI+   L      E ++ ++ +T Y  S ++   +E
Sbjct: 376 LEQVCNE-----SLEKGLNRKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTE 430

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           +  + N + +  +L  L+K+GIS+ LDDFGT  S LS L    FD +K + S M    S 
Sbjct: 431 TAFIINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSMLRDFHFDVIKLDRSFMLDVESN 490

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  + +R+II +  +I T +IA+ +     ++ L   GCD +Q      P+    +
Sbjct: 491 PQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHL 547


>gi|254501925|ref|ZP_05114076.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437996|gb|EEE44675.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 710

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/427 (30%), Positives = 221/427 (51%), Gaps = 10/427 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ ++ + I   A  D LTG+PNR  F  RL+  L  +    +    VM+ID+DK+K+IN
Sbjct: 215 EQLQTSKNIQYLAHHDTLTGLPNRAVFNARLSEALRFAQAKAS-NIGVMIIDVDKFKEIN 273

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD  L  +  R+  +     ++ARLSG+ F ++L S +++ ++A  A  M  +
Sbjct: 274 DTHGHGIGDVFLQIIADRLKSVFSGH-LVARLSGDEFAVMLTSVSDTGRMARLAADMISA 332

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
              P N+  REI ++ SIG A  T     SS +L  A+LA+Y AKH G +    +     
Sbjct: 333 TDPPCNIDGREIKISLSIGLARATDGSWRSSRLLHCADLALYRAKHEGRSTFCWYTQDLD 392

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +    R  I++ L  A++  +L L Y P   L D  + G EALI+W+HP  G +    F+
Sbjct: 393 AEAQKRKEIEQGLVKALKFDQLKLKYQPQYALSDGSLKGYEALIRWEHPTKGMMRPDSFI 452

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I+ I  ++LE+  R+   W +        + IN++       ++ + +   +
Sbjct: 453 PIAEDTGLIEDIGNWVLEQACREAALWPNSNR----RVAINMSPAQFAAGDIQKRVARAL 508

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +   P R+++  +ES+++ N +     L ++R +G+S+ +DDFGT  S LSYL   PF
Sbjct: 509 QSSGLDPKRLEIEITESLLISNTDSVVHTLRQIRDMGVSIAMDDFGTGYSSLSYLSLFPF 568

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +    ++    AI+ SI+ + +++  TI A+ +  E     L   GCD IQ
Sbjct: 569 DKIKIDKAFIQDLGKEASTDAIVTSIVGLGRSLNVTITAEGVETEEQAILLRAAGCDLIQ 628

Query: 937 DSHVASP 943
                 P
Sbjct: 629 GYLYGKP 635


>gi|307300303|ref|ZP_07580083.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti BL225C]
 gi|307319586|ref|ZP_07599012.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306894708|gb|EFN25468.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti AK83]
 gi|306904469|gb|EFN35053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium meliloti BL225C]
          Length = 876

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 136/617 (22%), Positives = 263/617 (42%), Gaps = 41/617 (6%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVR 425
           A  G +++  +++   ++    A     +      +    R  +A+  S   +W+ D+  
Sbjct: 266 AFGGLMIVAPMIVAGRLMAERQANFRALRQSKDQLQELSHRLRIALDTSKIGIWELDVDS 325

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +     +  + G+   SM     +W   +H +D           +    G    EFR+
Sbjct: 326 GTLLWDSRMKELYGI-GSSMREVYEDWRNTLHPDDLARAEAEFAGTLAT-GGAYNTEFRI 383

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---------------------EQKK 524
           R  D +   +       + +NG+  + +G+  D+T                     E + 
Sbjct: 384 RLPDGEVRHIRAIGSTYAGTNGN-RKIVGVNWDVTADVKTRATLSEAKRLAEAHSAELEA 442

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +  NA  D LTG+PNR+     L         D   + ++  ID+D++K+IND +G
Sbjct: 443 ARHRMEFNALHDPLTGLPNRRFLDQILFD--RSRRADAKAKISIFHIDLDRFKQINDTMG 500

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD++L      + +  +  D +AR+ G+ F II  S       A  A  + +++++P
Sbjct: 501 HAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASGGCDEDAA-LASRVIEAMSVP 559

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
           +   ++E  +  SIG A+ T +    S++L NA++A+Y AK RG N  E+F     +   
Sbjct: 560 VRYEDQECRIGVSIGIAAQTDAADDLSQVLVNADIALYEAKRRGRNRHETFTGALKTAVL 619

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                 +++   +E +E    + P       +I+G+EAL +WDHP  G +    F+  AE
Sbjct: 620 QTKQTADEILRGLEQNEFVAYFQPQFCPSSLDIIGVEALARWDHPTKGLLGPHAFLKTAE 679

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           ++ ++ AI+  +LE+    I  W       P  + +N++   L D  L   ++ L     
Sbjct: 680 DINVVAAIDQKILEQALFQIYRWEANGIYVP-KVSVNLSYPRLRDEGLIARLEEL----S 734

Query: 823 YSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               R+     ES+    N       + R++++GI + +DDFGT  + +  L  +    +
Sbjct: 735 IPEGRLSFELLESISFDENDVTVMSNIRRIKELGIDIEIDDFGTGYASILSLLKLTPRRL 794

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +  L+     +     ++ SII +  ++   +IA+ +      + L  M C  +Q   
Sbjct: 795 KIDRQLVLPILSSPAERRLVASIIDIGTSLGIEVIAEGVETLEHARILKEMECHGLQGYA 854

Query: 940 VASPLGFNSILKLLKER 956
            A P+  N +   + ER
Sbjct: 855 FARPMNANDLATFVFER 871


>gi|171057791|ref|YP_001790140.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170775236|gb|ACB33375.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 730

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 220/437 (50%), Gaps = 8/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I   A++D+LTG+ NR  F DRL   L  +    N   +V+V+D+D++K++NDVL
Sbjct: 272 RREARIAELAYRDDLTGLANRTLFNDRLDQALASARRQGNA-LSVLVLDLDRFKQVNDVL 330

Query: 584 GIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G  +GD VL  +  R+   L    D +ARL+G+ F ++L    +          +   + 
Sbjct: 331 GHTLGDQVLKEVGERLRNALMRTTDTVARLAGDEFAVLLP-TQDHAAATALGRRLLSVLE 389

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFR 701
            P+ +  + + V+ASIG A    + +++++++  A++AM+ AK       V    +    
Sbjct: 390 SPVPVQGQRVDVSASIGIACADDAGLSAAQLMARADIAMHEAKQGNRGLLVFEAAMERHV 449

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +  DL  A +  E +L+Y P +RL D      E LI+W HP+ G +    F+  A
Sbjct: 450 EHGLTLLSDLRRAADQHEFFLLYQPKLRLSDGHCDAAEVLIRWRHPQRGIVPPDRFIPFA 509

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   IKAI L++L+     + SW+       + + IN++++DL   +    +   + + 
Sbjct: 510 EQTGAIKAITLWVLQHALNQLASWQQLGWQ--LSLNINVSTRDLGQPDFPALVDNALRRA 567

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             + + + L  +ES +M +P ++   L  L ++G+ L++DDFGT  S L+YL  +P   +
Sbjct: 568 GVAAASLCLEVTESAIMDDPAQALRCLQALNEMGVRLSIDDFGTGYSSLAYLKKLPVQEL 627

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++G       + I+RS I +A ++   ++A+ I  E   + L   GCD  Q   
Sbjct: 628 KIDRSFVSGLDRDEADVTIVRSTIDLAHHMGLAVVAEGIETEAVSQRLRSFGCDQAQGYL 687

Query: 940 VASPLGFNSILKLLKER 956
            + PL     +  LK+ 
Sbjct: 688 YSRPLPAMEFIAWLKQH 704


>gi|311103803|ref|YP_003976656.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8]
 gi|310758492|gb|ADP13941.1| c-di-GMP phosphodiesterase A [Achromobacter xylosoxidans A8]
          Length = 858

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 222/440 (50%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++   I   AF D LTG+PNR   L +    +  +   +  R  V+ +D+D++K++N
Sbjct: 421 EREEARARIRQLAFYDELTGLPNRNLLLAQAEQAIARAEP-ERKRVAVLFLDLDRFKQVN 479

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  + +R+  L +  DI+ RLSG+ F +++       ++   A  +  +
Sbjct: 480 DTLGHPIGDALLRDVAQRLRRLARAADIVGRLSGDEFVMLMPDF-EHGRLTAAAEHVLVA 538

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           +A P ++    +  + SIG + +  +      +L++A++AMY AK  G N +  F   ++
Sbjct: 539 LAQPFSVGGITLNPSVSIGISVFPENGRDMDTLLRHADMAMYQAKTAGRNRISFFSAEMN 598

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++  L  A+E   L L Y P + L +  + G+EAL +W HP  G+IS + F+
Sbjct: 599 RQAQERLALEAALRDALEAKALRLHYQPQVGLENGHLYGVEALARWRHPTLGDISPARFV 658

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + +      +  WR +    P  + +N+++ +  +  L   ++A +
Sbjct: 659 PLAEECGLIGDLGDWAVREACSQLAVWRTKGLQVP-SVSVNLSATNFHNLNLPRMIEATL 717

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++   + + + L  +E VV+     +   +  L ++G+ L++DDFGT  S L +L  +  
Sbjct: 718 TEFGLAAADLMLEITEGVVLDATAGTLRTIAELHRLGVRLSMDDFGTGYSSLGHLRRLIV 777

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S + G        A+  ++I + +++   ++A+ +  E   + L   GC   Q
Sbjct: 778 DELKLDRSFVQGLESDDAARALTSAVIRIGESLSLPVVAEGVENEEQRRFLIEQGCAAGQ 837

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL    + + L+ R
Sbjct: 838 GFLFSPPLPAGDLEEWLRGR 857



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 2/141 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               I  +            +     L +  +G+ V         V        +LG A 
Sbjct: 123 EVVRISVISRKSIADADRQEEVRLLLLGINETGNAVAVSGKDGRIVYVNDGFHRMLGFAR 182

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G         L      D    R  LD  +  R G    +  V     +  W+ +    +
Sbjct: 183 GDAVNQELGELLAGGRQD-GGTREELDRRIACREG-YHKDVLVYDRAGRPLWVSVMANSV 240

Query: 503 SNSNGDILRYIGIANDITEQK 523
            +  G ++  + +  DIT  K
Sbjct: 241 FDERGALVNIVDVLTDITPTK 261



 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF--RTILDSFVGYR 475
           ++D++     +    +   ++G           + L       +       +    +G +
Sbjct: 33  LFDFNPAGSLLNANANFLALVGHVREEALALRHDMLCDSMDEGKGIVGGEQVWARLLGGK 92

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                   R R +D  F W+     P+++  G+++R   I+ 
Sbjct: 93  --HFTGTCRYRKSDGGFVWIEATYMPIADEAGEVVRISVISR 132


>gi|227823490|ref|YP_002827463.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234]
 gi|227342492|gb|ACP26710.1| sensory box/GGDEF family protein [Sinorhizobium fredii NGR234]
          Length = 888

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 136/601 (22%), Positives = 259/601 (43%), Gaps = 37/601 (6%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +     +++ A       +     R  +A+  S   +W+ DI   R+     +  + G+ 
Sbjct: 294 LTTERQRNIRALRQSKDQLLELSHRLKIALDTSKIGIWELDIDTGRLLWDNRMKELYGV- 352

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             S+     +W   +H +D           V    G    EFR+R    +   +      
Sbjct: 353 GSSVRENYDDWKEALHPDDLARAEAEYAETVA-SGGAYNSEFRIRLPGGEIRHVRAMGSI 411

Query: 502 MSNSNGDILRYIGIANDIT----------EQKKSLE-----------GILCNAFQDNLTG 540
            +++ G   + +G+  D+T          E K+  E            +  NA  D LTG
Sbjct: 412 HASARGS-RKIVGVNWDVTADVETRARLSEAKRLAEAHSAELEAARYRMEFNALHDPLTG 470

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+     L         D   R ++  ID+D++K+IND +G A GD++L      + 
Sbjct: 471 LPNRRFLDQILGD--HARQFDARDRVSIFHIDLDRFKQINDTMGHAAGDEILRHAAGLLR 528

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
              +  D +AR+ G+ F II    N     A  A ++ ++++ P+   ++E  +  SIG 
Sbjct: 529 SSARESDFVARIGGDEFVIIRAGGNTEEDAA-LASSIIEAMSTPVRYKDQECRIGVSIGI 587

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS 718
           A+  ++    +++L NA++A+Y AK RG N  E+F     +         +++   +E +
Sbjct: 588 AAQAAATDELAQILVNADIALYEAKRRGRNRHETFTGALKTAVFQTKQTADEILRGLEQN 647

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E    + P       E++G+EAL +WDHP  G I    F+  AE++ ++ AI+  +LE+ 
Sbjct: 648 EFVAHFQPQFCPASLEVIGVEALARWDHPTKGLIGPHAFLKTAEDINVVAAIDQAILEQA 707

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              I  W       P  + +N++   L D  L E ++ +         R+     ES+  
Sbjct: 708 LFQICRWEANGIRIP-KVSVNLSYSRLRDEGLIERLEQM----RIPEGRLSFELLESISF 762

Query: 839 G-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
             N       + R++++GI + +DDFGT  + +  L  +    +K +  L+     + ++
Sbjct: 763 DENDTTLLSNIRRIKELGIDIEIDDFGTGYASILSLLKLTPRRLKIDRQLVLPLLESPQQ 822

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ SII +  ++   +IA+ +        L ++GC  +Q    A P+  N +   + E
Sbjct: 823 RRLVESIIDIGTSLGIEVIAEGVETHEHAAILKQLGCHGLQGYAFARPMSANDLATFIFE 882

Query: 956 R 956
           R
Sbjct: 883 R 883


>gi|296102115|ref|YP_003612261.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056574|gb|ADF61312.1| RNase II stability modulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 663

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 252/569 (44%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +QG+    +     V  +  ++   D   +            GL    + G    +
Sbjct: 103 ARDLAQGLSFAEQ----VVSEANSVIVILDQNGNIQRFNRLSEEYTGLKEQEVIGQN-VF 157

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++  ++    +  +  F        + E  ++    Q  ++       S S  + +  
Sbjct: 158 KLFMSRSEAAASKRNITGFFRN-GSSYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + ++  +D   +    +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAID---SRGETQVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L ++   I   L+   +LARL G+ F I++ +  +   +  
Sbjct: 274 LDNFKKVNDAYGHMFGDQLLQAVALAILSCLEEGQVLARLGGDEF-IVMATNTSQGSLEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   EI    S+G A           +++NA+ AMY AK  G    
Sbjct: 333 MASRILTRLRQPFRIGLIEIYTGCSLGIALAPQHGNDRESVIRNADTAMYTAKENGRGKF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A++N +L + Y P +     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFEYLWLDTNLRKALDNDQLLIHYQPKVTWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R +  WRD+     + + +N++++ L D  +
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVMLDVVRQVAKWRDKGIN--LRVAVNVSARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FSDLKQALKDLDFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K + S +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQSFVRDIHKQSISQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  + LK   
Sbjct: 630 KNGVNERQGFLFAKPMPAAAFERWLKRYQ 658


>gi|83749986|ref|ZP_00946933.1| Hypothetical Protein RRSL_00080 [Ralstonia solanacearum UW551]
 gi|83723346|gb|EAP70577.1| Hypothetical Protein RRSL_00080 [Ralstonia solanacearum UW551]
          Length = 898

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 142/582 (24%), Positives = 257/582 (44%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 319 VGALAKLLRLEGEYRQARDLRDQYQLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGA 378

Query: 444 SMHGPIRNWL-PYIHINDRDNF-RTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRI 499
           S  G  R  L   +   D     R    S +  R GR        + A + Q  W+   +
Sbjct: 379 SWKGRTRLMLGDMMLAEDGSILPRAAWPSTLAARTGRAISNVVVGMPAGNGQIVWLRESV 438

Query: 500 RPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +      +  I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 439 LPMFSQDSAAPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 498

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ + +D +K +N+ +G  +G+ VL     RI   +    +LARL G++F 
Sbjct: 499 STGQ---AALLYVGLDHFKTVNEAMGHHIGNQVLNVAAHRIRADVGQRALLARLGGDQFC 555

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +       +    A  M  ++A P    ERE+ ++AS+G A +      ++ ++  AE
Sbjct: 556 VAIDV---PEQAETLAQQMLDALAKPFPGGEREVHLSASVGVAMFPEDGSDAASLVSRAE 612

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+    + LVY P   L   E+V
Sbjct: 613 AAMYRAKENGRNRMARYSRTLETQILRRFTLNERMRRALGRGHVRLVYQPKYALATRELV 672

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L +      +W          +
Sbjct: 673 AVEALMRWSDPELGAVSPTEFIAVAEESGYILELGRWALLQACSQGQAWERDFGFAG-RV 731

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   +   +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 732 AVNVSARQCDAGVIERDVDEALGVSGLRPSRLELELTESVLLADRLSTQRLLTSLAARGV 791

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            + LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 792 RIALDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 851

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ R
Sbjct: 852 AEGVETPEQSAFLAAHACDEVQGFLFGRPLEVPAMESLLRSR 893


>gi|160881061|ref|YP_001560029.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
 gi|160429727|gb|ABX43290.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
          Length = 547

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/444 (28%), Positives = 227/444 (51%), Gaps = 10/444 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KKS E +   A+ D LT +PNR +F++ L  I+     ++     ++ IDID +K IN
Sbjct: 106 ELKKSKEIVKRMAYSDYLTSLPNRLAFVELLDGIMATIRQNE--IVGILDIDIDNFKDIN 163

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG + GD++L+ +  R+ EL+K  D L+R+ G+ F I++ +  +  ++ +  + +++ 
Sbjct: 164 DTLGHSYGDEMLIDVMHRLEELIKENDYLSRIGGDEFAILIQNLTDLSELEERILEVQQI 223

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            A P  +  RE  +T SIG A       T+  ++KN   AMY AK RG N+   +  S  
Sbjct: 224 FATPFRVATREFFITVSIGVAIAPKDGKTTQSLVKNMNSAMYEAKERGKNNFCYYDDSIN 283

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 ++   +L  A+E ++  + Y P I L+++ +VG EAL +W HP+ G I+  +F+
Sbjct: 284 LKMMQKLEMQSELRKAIEENQFVVYYQPQINLVNDRVVGFEALARWQHPEKGIIAPIDFI 343

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  MI AI   ML      + S ++      I I +N++++   D +    +  ++
Sbjct: 344 PLAEDNGMIVAIGKKMLYESCMQLRSLQES-GYRDIVIAVNLSARQFKDKDFLPMVYEIL 402

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      ++   +E+V + + E S   + +L++IGI+  LDDFGT  S L+YL  +P 
Sbjct: 403 EETKADARGLEFEITETVALDDLEFSISTISKLKEIGITFALDDFGTGYSSLNYLKRLPV 462

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +           I+ ++I +AK++   +IA+ +      K L  + C   Q
Sbjct: 463 NNLKIDKSFLDTILENNSDQKIVHTMIDLAKHLNIEVIAEGVELSEQEKFLKEINCGKAQ 522

Query: 937 DSHVASPLGFN---SILKLLKERF 957
             +   P+       ILK L    
Sbjct: 523 GYYYGKPVPKEIAFEILKKLNSEN 546


>gi|77164380|ref|YP_342905.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|254433696|ref|ZP_05047204.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
 gi|76882694|gb|ABA57375.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207090029|gb|EDZ67300.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
          Length = 571

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 216/426 (50%), Gaps = 10/426 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PN     +RL   +  +         ++ +D+D+ K+IND  G   GD  L  
Sbjct: 146 YDTLTGLPNHTVLRNRLEQAMGPARQ-----LALLCLDLDRLKEINDSFGHEAGDRELAR 200

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + + + + L+  D   R+ G+ F II        K    A  +  +IA P  +L  EI  
Sbjct: 201 VAKVLQDCLEPTDTALRIGGDEFAIIQTPALGVDKATLLAQRLLDAIARPHKILGHEIHN 260

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           +ASIG   + +    + ++LKNA++AMYHAKH G N+ + +    ++    R+ + ++L 
Sbjct: 261 SASIGITLFPNDGDKAEQLLKNADIAMYHAKHEGQNNYQLYTPAINARAHPRMALAKELQ 320

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A E   LYL + P + L      G EAL++W HP+ G ++   F+ +AEE  +I  I  
Sbjct: 321 RAFETDNLYLQFQPQLNLATHRTSGFEALLRWRHPQHGMLARQTFIRLAEETGLIVPIGA 380

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE   +  + WR Q    P+ + +N++ +     +L   +  ++ KT  +PS +++  
Sbjct: 381 WALETACQTCMGWR-QLRAGPLRVAVNLSPRQFRQPDLAGSIATILEKTGLAPSALEIEV 439

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E +++ + + +   L  L  +G+ +++DDFGT  + LSYL  +PFD++K + S + G  
Sbjct: 440 TEGLLLEDMDSAFNTLQSLSILGVHVSVDDFGTGHASLSYLKNLPFDSIKIDRSFIHGIP 499

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I +++I +  ++   ++A+ +     +  L + GCD +Q   ++ PL      
Sbjct: 500 ADSESRTITKAVIALGHSLNLKVVAEGVETPEQLLYLQKQGCDLVQGYFISKPLDVPEAQ 559

Query: 951 KLLKER 956
           +  +E+
Sbjct: 560 RWWEEK 565


>gi|114049305|ref|YP_739855.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113890747|gb|ABI44798.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 706

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/557 (21%), Positives = 235/557 (42%), Gaps = 12/557 (2%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRD 462
           E  +  +  S + V+  D     +     +  I G ++  + G    +L    +      
Sbjct: 154 EIMATTLEESAEAVYITDAGNHILAVNKAMCRICGYSAEQLIGKTPEFLEAKLLPPGQET 213

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           + +  +       RG    E   + +D       +  R +   +  +   + I +DI+ +
Sbjct: 214 DCQAAMK-----LRGFWHGETLKQRSDGSHFPAWLSSRRIETDDNALYH-VNIFSDISTK 267

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     +   A  D LTG+PNR      L + LD    D +    +M +D++ +K IND 
Sbjct: 268 KLLETQLTTRAMYDTLTGLPNRYHLKQILNSALDKLKDDPSTLGALMFLDLNGFKNINDS 327

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G ++GD VL  +  R+         +AR+ G+ F ++    +   +I  FA  +     
Sbjct: 328 FGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVQQECSCKEEIQLFAEQILSLFD 387

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFR 701
            P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S   
Sbjct: 388 SPFEIEGQKFFLGTSIGIALFPTHSDQAGQLISLADTAMYSAKKNQPHLVFYDKAMSQAA 447

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  +L  A    +  L Y  I+ L   + +G EAL++W      +  ++EF+ + 
Sbjct: 448 ELKLKLINNLRHAHSLKQFNLAYQAIVDLHTNKPIGAEALLRWHKSPSEHFEAAEFVPLL 507

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  + LE+  +    WR     P   + +N++   L   +    + + +   
Sbjct: 508 EETGLIITIGQWALEQACKQATIWRASY-QPDFKVSVNVSPLQLEHVDFVGQVISALEMV 566

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +ES ++  PE++R  L R++ +G+ + +DDFGT  S LS LG +P D+V
Sbjct: 567 ALPAEALILEITESALLRQPEQARQTLERIKALGVGIAIDDFGTGLSSLSRLGTLPIDSV 626

Query: 882 KFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +    +         +  +I+ +A+ ++   +A+ I  +     +T MG  + Q    
Sbjct: 627 KIDAEFALRLHDASGKKLCHAIVQLAQALDIHFVAEGIETQQQKDIITHMGQGFAQGFLF 686

Query: 941 ASPLGFNSILK-LLKER 956
             P       +  L ER
Sbjct: 687 GYPSSVEQFTQAFLAER 703


>gi|172039201|ref|YP_001805702.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
 gi|171700655|gb|ACB53636.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
          Length = 608

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 129/445 (28%), Positives = 232/445 (52%), Gaps = 9/445 (2%)

Query: 519 ITEQ----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +TE+    +++   +   A  D+LTG+ NR   +++L   L L+  D N +  V+ +D D
Sbjct: 161 VTERTQQLQEANNRLQEMALYDSLTGLANRNLLIEQLKQSLTLTKLDKNYQFAVLFLDCD 220

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VG+ +L  +++ +  +L+  DILAR+ G+ F I+L   +   +  + A
Sbjct: 221 RFKIINDSLGHLVGNLLLGKISQALQTILEKNDILARVGGDEFAILLSDISGCTQGTELA 280

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++   +  P     +EI V  SIG             ++++A++AMY AK  G    + 
Sbjct: 281 KSILNLLKQPFYCNGQEIFVNVSIGIVFSHPDYEDPENIVRDADMAMYKAKSLGRGQYQI 340

Query: 695 FRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    +      ++++ DL  AV+  E  + Y PII L   +I G EALI+W HP+ G I
Sbjct: 341 FTPEMYEIAKKLLILQTDLHRAVQQEEFAVYYQPIIDLKQNKIAGFEALIRWIHPQKGMI 400

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE  +I  I  ++++   R +  W  Q     + I IN+A++ L  + L  
Sbjct: 401 SPGEFLPLAEETGLICEIGSWVMKEACRQLSQWHQQ-GFTDLKIYINLAAQQLNQSNLVA 459

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T      +KL  +ES +M + + +++LLG L K GI L++DDFGT  S LS 
Sbjct: 460 EIDGILMETKLHTDSVKLEITESSMMQDLQTTKVLLGELWKRGIKLSIDDFGTGYSSLSQ 519

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P +T+K + S +    +      ++  I+ +A+ +   ++A+ I     +++L ++
Sbjct: 520 LQNFPINTLKIDRSFLKNVDKNSENLGLVPVILSIAEVMTMDVVAEGIETTEQLEQLRKL 579

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC + Q    A PL   +  +L+ +
Sbjct: 580 GCHFGQGFLFAKPLDAETATELIHD 604


>gi|157963461|ref|YP_001503495.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157848461|gb|ABV88960.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
          Length = 789

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 217/443 (48%), Gaps = 9/443 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I+++K+S   +   A  D LT + NR   + RL  ++  S      +  ++ ID+D 
Sbjct: 334 HEEISKRKESESKLEYQATHDELTNLANRTHGMARLQEMIGRS-HVKQTQILLLFIDLDN 392

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND +G   GD +L   ++R+ + ++  DI+ARL G+ F +I+    +       A 
Sbjct: 393 FKQVNDTVGHHAGDLLLKQASKRLLKSVRTSDIVARLGGDEFLVIVPDIQHQDSAKLVAS 452

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           ++      P  + ++E  V+ASIG + +      +S +LK A+ A+Y  K  G N    +
Sbjct: 453 SILSVFEKPFRIEQQEFFVSASIGMSVYPKDGTNASTLLKRADTALYSVKDMGRNGFNFY 512

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   +    +   L  AV+  EL + Y PI+ L+  +IV  EAL++W   + G +S
Sbjct: 513 DEQMNLDVQRSFALNVRLHQAVQQGELEIYYQPILDLVSRKIVAAEALMRWTDSELGFVS 572

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCE 812
             +F+ +AE+  +I  +   +L        +W+      PI I IN +S        L E
Sbjct: 573 PEDFIPLAEKNGLIHRLGDIVLLEACTQAAAWQQI---SPIKIAINFSSVQFRYCEALQE 629

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T    S++++  +ES+++        +L  L+++G+ L++DDFGT  S LSY
Sbjct: 630 RIVDVLVQTGLPASQLEMEVTESLLIEQDNALMKMLAYLKQLGVGLSIDDFGTGYSALSY 689

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L    F  +K + + +   T      +++ +I+ MAK+++  ++A+ I  +     L + 
Sbjct: 690 LQKFSFTKLKIDRAFINNMTVCSSDASLVSAILAMAKSLKLKVVAEGIENDEQALFLQQH 749

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
            C++ Q    + P+      +LL
Sbjct: 750 NCEFGQGYLFSRPVPAAEFTQLL 772


>gi|294625263|ref|ZP_06703902.1| PAS PAC, GGDEF and EAL domain signal protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292600437|gb|EFF44535.1| PAS PAC, GGDEF and EAL domain signal protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 920

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/613 (22%), Positives = 251/613 (40%), Gaps = 12/613 (1%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
              +         +    +  G   +V ++G   +Q+V         I    E  +    
Sbjct: 307 INGLLGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLNRVSA 364

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                  + ++   R+  T +   I GL   ++   +   L     + RD F   L    
Sbjct: 365 LGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAALLRIS 422

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  Q E        Q  W+ + I       G   R++ +  DIT ++++ E I   
Sbjct: 423 DGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDITREREANERIELL 480

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR    ++    +  +         +++ID+D +K IND  G A GD++L
Sbjct: 481 AHYDRLTGLPNRFLLREQAENAIREANERGQT-LAMLLIDLDGFKSINDSFGHATGDNLL 539

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+      +
Sbjct: 540 KLASARLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKEHVTL 599

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710
            + ASIG A           +L+ A+ AMY AK  G N    +          R+ ++  
Sbjct: 600 KLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTYHYYSQDVLLRAQRRLELEHA 659

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  E  LVY P++  +D+    +EAL++W+ P  G  S  EF+ IAEE   I  +
Sbjct: 660 LQGALEREEFTLVYQPLVNTVDDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGEIVRL 719

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++    R  + W          + +N+++  L +    E +  +     + PSR++L
Sbjct: 720 GEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPSRLEL 778

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S + G
Sbjct: 779 ELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQG 838

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL    
Sbjct: 839 MLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRD 898

Query: 949 ILKLLKERFPLVK 961
           + + L+E    ++
Sbjct: 899 MAQWLREADAGIR 911



 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 100 RWEIGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+  QK 
Sbjct: 160 AAVQAHLEGRTDTYAAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHQKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLRDQ 227



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD   D +  + D    LG+    + G IR+ L  
Sbjct: 220 LEQQLRDQQAQLEEAQRIASMGSWSWDSHHDALWVSQDFLQQLGITHVRLQG-IRDILRL 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 279 LAGPSVAQLRSAWRK-IKHEGMPVHFEMEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|288549691|ref|ZP_06390767.1| protein gmr [Enterobacter cancerogenus ATCC 35316]
 gi|288317934|gb|EFC56872.1| protein gmr [Enterobacter cancerogenus ATCC 35316]
          Length = 663

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 252/569 (44%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +QG+    +     V  +  ++   D   +            GL    + G    +
Sbjct: 103 ARDLAQGLSFAEQ----VVSEANSVIVILDQHGNIQRFNRLSEEYTGLKEQEVIGQN-VF 157

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++  ++    +  +  F        + E  ++    Q  ++       S S  + +  
Sbjct: 158 KLFMSRSEAAASKRNISGFFRN-GSSYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + ++  ++      + +  ++ +D
Sbjct: 217 ICSGTDITEERRAQERLRVLANTDTITGLPNRNAIHELISDAIN---ARGDTQVGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L ++   I   L     LARL G+ F I++ S+ +   +  
Sbjct: 274 LDNFKKVNDAYGHMFGDQLLQAVALAILSCLDEGQTLARLGGDEF-IVMASDTSQGSLEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    S+G A           +++NA+ AMY AK  G    
Sbjct: 333 MASRILTRLRQPFRIGLIEVYTGCSLGIALAPQHGTDRESVIRNADTAMYTAKESGRGKF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A++N +L + Y P +     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFEYLWLDTNLRKALDNDQLLIHYQPKMTWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R +  WRD+     + + +N++++ L D  +
Sbjct: 452 LIPPMEFISYAEESGLIVPLGRWVMLDVVRQVAKWRDKGIN--LRVAVNVSARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +S   +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FSDLKQALSDLNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K + S +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQSFVRDIHKQSISQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  + LK   
Sbjct: 630 KNGVNERQGFLFAKPMPAAAFERWLKRYQ 658


>gi|238789541|ref|ZP_04633325.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia frederiksenii ATCC 33641]
 gi|238722294|gb|EEQ13950.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia frederiksenii ATCC 33641]
          Length = 664

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 241/555 (43%), Gaps = 12/555 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                G     + G     L         + R  
Sbjct: 113 EQVVSEANSVIVILDKDGYVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASS-RKN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F   R    + E  V     +  ++       S S  +    I    DIT+++++ E
Sbjct: 172 IEGFF-QRGASYEVERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   
Sbjct: 231 RLRILANTDMITGLPNRHAIHERINSAI---QTRGDTSVGIIYLDLDNFKKVNDHYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   L   ++LARL G+ F +++ +      +      +   + +P  +
Sbjct: 288 GDRLLKDVSLAILSCLGENEMLARLGGDEFIVLVENAI-MNSLETTTQRILNRMKLPFRV 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RV 705
              E+    SIG A       T   ++++A+ AMY AK  G      F     +     V
Sbjct: 347 GLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKISEYV 406

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L   +E  +L + Y P I     ++  +EAL++W  P+ G I+  EF+  AEE  
Sbjct: 407 WLDTNLRKGLEQHQLQVFYQPKISTKTGKVHSVEALVRWLSPERGLIAPLEFISYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ +  ++L+   +  + W+ +     + I +N++++ L+D  +       +  +    
Sbjct: 467 LIRPLGKWVLQTSMQQAVDWKKRGIN--LRIAVNVSARQLIDEAIVTSFIESLEASDLKC 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S + +  +ES ++ + + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + 
Sbjct: 525 SLVDVELTESCLIDDEDAAINIMKQLRDLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          +++R+II +A+ ++  +IA+ +  + +   L  +G D  Q    A P
Sbjct: 585 SFVRHIDNNPISQSLVRAIIVVAEALKMRVIAEGVETQEEEAFLDSIGIDEKQGFLYAKP 644

Query: 944 LGFNSILKLLKERFP 958
           +  + +   L  + P
Sbjct: 645 MPADELEHWLVTQHP 659


>gi|330721811|gb|EGG99789.1| Sensory box/GGDEF family protein [gamma proteobacterium IMCC2047]
          Length = 409

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 116/402 (28%), Positives = 216/402 (53%), Gaps = 5/402 (1%)

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A  +     V+ IDID++K +ND LG  VGD +L  + +R+   L+ P+ +AR  G+ F 
Sbjct: 2   AKKNQNHIAVLFIDIDRFKSVNDTLGHTVGDQLLQDIAKRLTFNLQKPNTVARFGGDEFI 61

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +IL  E+N  ++ ++ +++ K +  P NL   ++  +ASIG + +      +  +L+ A+
Sbjct: 62  VILPDEDNLHRLENYVLSILKHLETPYNLNGHKVFASASIGVSVYPYDGDDTETLLRKAD 121

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM+ AK +G N+V+ F +        R  +++DL  A+   +L L Y PII      IV
Sbjct: 122 NAMHKAKEKGRNNVQFFTMEMDIEAQRRQELEQDLHKAIAKKQLSLNYQPIIDAQTGMIV 181

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EAL++W HPK G IS  +F+ +AEE+ +I +I  ++L    +    W  +A   P  +
Sbjct: 182 SAEALVRWKHPKKGFISPDDFIPLAEEVGIITSIGEWVLREACKTASHWTAEAGSIP-SV 240

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++S      ++   ++ ++ +T     R+ L  +ES+++ +   +   L ++R +G+
Sbjct: 241 SVNLSSIQFQKQDIPTLVKNVLLETGLPARRLTLEITESLLVNDDHNTLKQLQQIRSLGV 300

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L++DDFGT  S LSYL   P  T+K + S +TG     +  A++ +I+ +A+++  +++
Sbjct: 301 GLSIDDFGTGYSSLSYLKKFPVSTLKIDRSFITGLPKNTEDKALVSAIMGIARSLSLSVV 360

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  +     LT+ GC   Q    + PL       LL+ +
Sbjct: 361 AEGVETQEQADLLTKEGCQRFQGYLFSKPLPRLEFETLLQRQ 402


>gi|332142125|ref|YP_004427863.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii str.
            'Deep ecotype']
 gi|327552147|gb|AEA98865.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii str.
            'Deep ecotype']
          Length = 1392

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 143/623 (22%), Positives = 259/623 (41%), Gaps = 11/623 (1%)

Query: 335  ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
            +    ++P         +   + ++          A      L++ L    ++       
Sbjct: 772  DYVFSVVPTPGSFDFNVLPAEITLSMPYAPLRSPLAYTIYATLVIGLFVAYLLSRQRQLF 831

Query: 395  YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
               Q         S A   + D V  +D  +  V   P    + G  +          L 
Sbjct: 832  KL-QKAKQQVTLFSDAFRQTRDWVLIFDKEKRLVAANPAFEQVFGFNNKEPLPKQLAKLY 890

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
              + N        L           + E  +  AD + + ++I I  +S  +     Y+ 
Sbjct: 891  MRYPNLNRQLSGKLPEM--QGGDFWKDEAVIDGADGKRYDVLIDITAVSGESNAADHYLI 948

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            + +DITEQK +   +L  A  D+LTG+ NR   LDRL   + L+   +  R  VM +D+D
Sbjct: 949  VISDITEQKNAERKLLKIATYDSLTGLVNRTLLLDRLEHAIGLA-RHNKHRVAVMFVDLD 1007

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++K IND LG   GD +L  +  R+  L+     +ARL G+ F I++    N   ++ F 
Sbjct: 1008 RFKGINDSLGHDYGDKLLRIVANRMRNLVAESGTVARLGGDEFVIVIEEVLNDDDLSSFV 1067

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHV 692
              + +S+  PI+L E  + V+ SIG A +       +E++K A++AMY AK     G   
Sbjct: 1068 GQIIESVETPISLAEEVLRVSCSIGVAFYPEDASEPAELIKQADVAMYSAKKDALSGFTY 1127

Query: 693  ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
             +  ++     R++++  +  A  +   +  Y PII       +G+E L++         
Sbjct: 1128 FTRDMNERAKTRLLLENKVKRAYSDDCFFNHYQPIIDARTNTTIGVELLLRGKLNDEPLY 1187

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               +F+ + EEL  I  +    + R A D+  W +Q      ++ IN+++          
Sbjct: 1188 P-DQFIPVLEELKYIIEVTRQAMRRAAEDLSQWYEQGFNG--YVSINLSALHFKTEFDLG 1244

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            G+ +++ +     S  +   +E V+M + + +   + R  K G  L LDDFGT  S LSY
Sbjct: 1245 GVLSVLEEFKLPKSAFRFEITEGVLMDDSDNALRQIKRFVKEGFILALDDFGTGYSSLSY 1304

Query: 873  LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P   +K + S +          A++ + I +A N+  + +A+ +  +  +KEL   
Sbjct: 1305 LQRYPLSVLKIDKSFVNEMAAGNANEALVTTTITLASNLNMSCVAEGVETQEQVKELIDK 1364

Query: 931  GCDYIQDSHVASPLGFNSILKLL 953
             C + Q    A P   + +  LL
Sbjct: 1365 ACFFHQGYFYAKPCTASEVAPLL 1387


>gi|207728332|ref|YP_002256726.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206591578|emb|CAQ57190.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 677

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 141/582 (24%), Positives = 258/582 (44%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 98  VGALAKLLRLEGEYRQARDLRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGA 157

Query: 444 SMHGPIRNWL-PYIHINDRDNF-RTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRI 499
           S  G  R  L   +   D     R    S +  R GR        + A + Q  W+   +
Sbjct: 158 SWKGRTRLMLGDMMLAEDGSILPRAAWPSTLAARTGRAISNVVVGMPAGNGQIVWLRESV 217

Query: 500 RPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +      +  I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 218 LPMFSQDSAAPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 277

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ + +D +K +N+ +G  +G+ VL     RI   +    +LARL G++F 
Sbjct: 278 STGQ---AALLYVGLDHFKTVNEAMGHHIGNQVLNVAAHRIRADVGQRALLARLGGDQFC 334

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +   +   +    A  +  ++A P    ERE+ ++AS+G A +      ++ ++  AE
Sbjct: 335 VAI---DAPEQAETLAQQILDALAKPFPGGEREVHLSASVGVAMFPEDGSDAATLVSRAE 391

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+    + LVY P   L   E+V
Sbjct: 392 AAMYRAKENGRNRMARYSRALETQILRRFTLNERMRRALGRGHVRLVYQPKYALATRELV 451

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L +      +W          +
Sbjct: 452 AVEALMRWSDPELGAVSPTEFIAVAEESGYILELGRWALLQACSQGQAWERDFGFAG-RV 510

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   +   +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 511 AVNVSARQCDAGVIERDVDEALGVSGLRPSRLELELTESVLLADRLSTQRLLTSLAARGV 570

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            + LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 571 RIALDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 630

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ R
Sbjct: 631 AEGVETPEQSAFLAAHACDEVQGFLFGRPLEVPAMESLLRSR 672


>gi|17988662|ref|NP_541295.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|225686735|ref|YP_002734707.1| GGDEF domain-containing protein [Brucella melitensis ATCC 23457]
 gi|256043847|ref|ZP_05446768.1| GGDEF domain protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256262130|ref|ZP_05464662.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 2
           str. 63/9]
 gi|260565024|ref|ZP_05835509.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|265990270|ref|ZP_06102827.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17984469|gb|AAL53559.1| diguanylate cyclase/phosphodiesterase domain 2 (eal) [Brucella
           melitensis bv. 1 str. 16M]
 gi|225642840|gb|ACO02753.1| GGDEF domain protein [Brucella melitensis ATCC 23457]
 gi|260152667|gb|EEW87760.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. 16M]
 gi|263000939|gb|EEZ13629.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263091831|gb|EEZ16153.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 2
           str. 63/9]
          Length = 765

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|325927864|ref|ZP_08189088.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas perforans 91-118]
 gi|325541704|gb|EGD13222.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas perforans 91-118]
          Length = 920

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/607 (22%), Positives = 250/607 (41%), Gaps = 12/607 (1%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
              +         +    +  G   +V ++G   +Q+V         I    E  +    
Sbjct: 307 INGLLGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLNRVSA 364

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                  + ++   R+  T +   I GL   ++   +   L     + RD F   L    
Sbjct: 365 LGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAALLRIS 422

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  Q E        Q  W+ + I       G   R++ +  DIT ++++ E I   
Sbjct: 423 DGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDITREREANERIELL 480

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR    ++    +  ++        +++ID+D +K IND  G A GD++L
Sbjct: 481 AHYDRLTGLPNRFLLREQAENAIREASERGQT-LAMLLIDLDGFKSINDSFGHATGDNLL 539

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+      +
Sbjct: 540 KLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKEHVTL 599

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710
            + ASIG A           +L+ A+ AMY AK  G N    +          R+ ++  
Sbjct: 600 KLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTYHYYSQDVLLRAQRRLELEHA 659

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  E  LVY P++  +D+    +EAL++W+ P  G  S  EF+ IAEE   I  +
Sbjct: 660 LQGALEREEFTLVYQPLVNTVDDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGEIVRL 719

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++    R  + W          + +N+++  L +    E +  +     + PSR++L
Sbjct: 720 GEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPSRLEL 778

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S + G
Sbjct: 779 ELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQG 838

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL    
Sbjct: 839 MLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRD 898

Query: 949 ILKLLKE 955
           + + L+E
Sbjct: 899 MAQWLRE 905



 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 100 RWEIGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 160 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLRDQ 227



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD   D +  + D    LG+    + G IR+ L  
Sbjct: 220 LEQQLRDQQAQLEEAQRIASMGSWSWDSHHDALWVSQDFLQQLGMTQVRLQG-IRDILRL 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 279 LAGPSVAQLRSAWRK-IKHEGMPVHFEMEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|306846186|ref|ZP_07478748.1| diguanylate cyclase [Brucella sp. BO1]
 gi|306273437|gb|EFM55298.1| diguanylate cyclase [Brucella sp. BO1]
          Length = 778

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 97  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 156

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 157 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 208

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 209 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 268

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 269 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 322

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 323 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 375

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 376 QVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 435

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 436 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 495

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 496 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 555

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 556 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 610

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 611 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 670

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 671 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 730

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 731 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 760


>gi|254500696|ref|ZP_05112847.1| ammonium transporter, putative [Labrenzia alexandrii DFL-11]
 gi|222436767|gb|EEE43446.1| ammonium transporter, putative [Labrenzia alexandrii DFL-11]
          Length = 1043

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 136/574 (23%), Positives = 253/574 (44%), Gaps = 22/574 (3%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                 +   +    ++    + ER S     + D +    +    +        ++G + 
Sbjct: 456  TVQSQEQAQSRVADAKRTQEEAERLSALANATFDAI-VISVDGRILDGNKTFEELVGYSI 514

Query: 443  GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              +   +R    ++  +        L+  +  +  +   E        +   + IR R +
Sbjct: 515  SELE--MRGLYEFVETD----VAGTLEDHLI-KAEKEPREVVFVNRAGERVPVEIRTRVI 567

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +   G   R +    D+ E+KK+   IL  A  D LT +PNR  F   L   +      +
Sbjct: 568  A-YRGVPTR-VSALVDLRERKKAEAQILHLAQHDPLTDLPNRAVFNAELQQTMRRCEKKE 625

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 ++++D+DK+K IND+ G   GD V+     R+    +  D +ARL G+ F II  
Sbjct: 626  QG-AALLLVDLDKFKDINDLHGHPAGDAVIRVTAERLLSACRGSDTVARLGGDEFAIIQT 684

Query: 623  SENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            S + + +  D A  +   ++ P+N      +   ASIG A   ++  +  +++ NA++A+
Sbjct: 685  SISFANQAEDMAHRLVAILSEPVNCGHGLIVKPGASIGVAMI-AAGQSEEQVVSNADIAL 743

Query: 682  YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y+AK  G      FR         R  +++DL  A+ + +  L + P + L    IV  E
Sbjct: 744  YNAKSAGRQTYCLFRKGMGAEVRQRREMEKDLHAALADDQFELYFQPRLNLATGNIVSYE 803

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            ALI+W+HP  G +S  EF+ +AE    I  I  F+LER            N     I +N
Sbjct: 804  ALIRWNHPDHGLVSPVEFIPVAENSGQIIGIGKFVLERALAVAAQEIPTGN-----ISLN 858

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++     D +  E +   I  +    +RI+L  +E+ ++ +  R+  +L +L+ IG+ + 
Sbjct: 859  VSPVQFRDKDFIEDVARAIKASGIPANRIELEITENTLIEDDARALSILTKLKDIGVKIA 918

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKD 917
            LDDFG   S LSYL   PFD +K + S +         +AI+ +++ + K ++  I+A+ 
Sbjct: 919  LDDFGVGYSSLSYLSRFPFDCIKIDRSFVLEAQQNYNALAIIEAVVRLGKALDMRIVAEG 978

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +    ++  L   GC  +Q   +  P+  N +++
Sbjct: 979  LEDTENLCLLAAQGCHEVQGYLIGKPVPVNKLVR 1012


>gi|313201708|ref|YP_004040366.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441024|gb|ADQ85130.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
          Length = 783

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 210/443 (47%), Gaps = 18/443 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR  F  +L   +  S         +M +D+D +K+IND LG ++GD
Sbjct: 335 WKQANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQ-PLVLMFLDLDNFKQINDQLGHSIGD 393

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +LV    RI  + +   +LARL G+ F I+L +  N  ++      + + +++P  +  
Sbjct: 394 KLLVETGARIAAVARDCTLLARLGGDEFTIVLSNVQNQQQVEWLCERILRQVSLPFTIEN 453

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
             + VT SIG AS+         ++K A+ AMY AK  G N  + F  S     + ++ +
Sbjct: 454 HVVYVTTSIGIASFPEHSRDVETLMKYADQAMYEAKRLGRNRYQFFSPSMQELAAHKLQV 513

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL + Y PI+ L   EI   EAL++W HP  G +   EF+ +AEE  MI
Sbjct: 514 SNDLRHALNRHELVMYYQPIVDLATNEIHKAEALVRWQHPTRGLVPPFEFIPVAEETGMI 573

Query: 768 KAINLFMLERIARD----IISWRDQANMPP---------IFILINIASKDLLDNELCEGM 814
             +  ++  + ARD    +       ++PP           + IN++      ++  +  
Sbjct: 574 NRMGDWVFRQSARDTVTLVQESLASRSVPPDGNVVDATIFQVSINVSPLQFQSSQELQTW 633

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           QA + +       + +  +E +++   ++ +  L + R  GI+ ++DDFGT  S L+YL 
Sbjct: 634 QAYLDQIGLPAECLAIEITEGLLLEASDQVKATLTQFRDAGIATSIDDFGTGYSSLAYLK 693

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D VK + S +         + +   I+ MA  +   +IA+ +  E  ++ L R GC
Sbjct: 694 KFHIDFVKIDRSFVQNLGAGNDDMVLCEVIVDMAHRLGMRVIAEGVETEAQLELLKRAGC 753

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D+ Q    +  L F+  +  +++
Sbjct: 754 DFAQGYLFSPALPFDQFMTFVRD 776


>gi|218246657|ref|YP_002372028.1| Chase sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 8801]
 gi|218167135|gb|ACK65872.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 8801]
          Length = 872

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/431 (29%), Positives = 232/431 (53%), Gaps = 9/431 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+PNR+  + ++  +     ++      ++ +D D++K IND LG   GD +L+
Sbjct: 438 YHDPLTGLPNRRLLIRQIQQVNRSQGSESQKLIAILFLDFDRFKTINDGLGHLAGDHLLM 497

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++RR+ E  +   ++ R+ G+ F + L   +++ ++  FA A++K ++ P     +EI 
Sbjct: 498 QISRRLQEQSQPQILVGRVGGDEFALCLNQISHAQEVTAFADALQKHLSQPFYWQNQEIY 557

Query: 654 VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKED 710
           +TASIG A         + E+L+ A++AMY AK  G   + V    + +   +R  ++ D
Sbjct: 558 ITASIGIALECVGQNFQAGELLRYADIAMYRAKELGTARHEVFVEGMDTQAVERWQLETD 617

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   ++N E  L Y PII L   +I G EAL++W   K G +S  +F+ +AEE  +I  +
Sbjct: 618 LRAGLQNQEFQLYYQPIISLKTGKIAGFEALVRWVSNKRGFVSPGDFIPLAEETGLIVPL 677

Query: 771 NLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L+   + I  W +Q     P+ + +N++ +     +L + +Q ++ +      R+K
Sbjct: 678 GQWILQEACQQIQRWHEQFPEIVPLIMSVNLSGRQFTQPDLVKQIQKILDEVNIEGDRLK 737

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++M + E +  LL RL+ +G+ L++DDFGT  S LSYL   P DT+K + S + 
Sbjct: 738 LEITESMMMNDVETAIDLLRRLKGLGLRLSIDDFGTGYSSLSYLHRFPVDTLKVDRSFVG 797

Query: 890 GSTEKRIA-----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
              E   +     I+R+II +  N++  +IA+ I  E  ++ L  + C+Y Q  + + PL
Sbjct: 798 RMEEGSDSEKYIQIVRTIISLGHNLDLDVIAEGIETEAQVRVLESLNCEYGQGYYFSKPL 857

Query: 945 GFNSILKLLKE 955
                 +LL +
Sbjct: 858 SAKDAEELLNQ 868


>gi|311279803|ref|YP_003942034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
 gi|308748998|gb|ADO48750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
          Length = 663

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 244/569 (42%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                QG+    +     V  +   +   D   +            GL    + G    +
Sbjct: 103 ARDLQQGLSFAEQ----VVSEANSAIVILDRHGNIQRFNRLCEEYTGLKEHEVIGQN-VF 157

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++   +    R  +  F        + E  ++    Q  ++       S S  + +  
Sbjct: 158 KLFMSPAEAAASRRHISGFFRN-GSSYEIERWIKTRKGQRLFLFRNKFVHSGSGKNEIYL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  D ++  +    T D  +  ++ +D
Sbjct: 217 ICSGTDITEERRAQERLRVLANTDTITGLPNRNAINDMISEAIA---TRDETQVGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L S+   I   L+    LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKVNDAYGHMFGDQLLQSVALSILSCLEEGQTLARLGGDEF-IVLATNTSQGALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    S+G +           +++NA+ AMY AK  G    
Sbjct: 333 MASRILNRLREPFRIGLIEVYSGCSLGISLAPQHGSDRESLIRNADTAMYTAKEGGRGKF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A++  +L + Y P I     E+  LEAL++W+ P+ G
Sbjct: 393 CVFLPEMNKRVFEYLWLDTNLRKALDADQLVIHYQPKITWR-GEVRSLEALVRWESPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I  + F+  AEE  +I  +  +++  + R +  WRD+     + + +N++++ L D  +
Sbjct: 452 LIPPAGFISYAEESGLIVPLGRWVMLDVVRQVALWRDKGIN--LRVAVNVSARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N E +  ++ +   +G  + LDDFGT  S L
Sbjct: 510 FSDLRQALKDLNFEYCPIDVELTESCLIENEELAHSVIQQFSALGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQDFVRDVHKHPVAQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+      + +K R 
Sbjct: 630 KNGVNERQGFFFAKPMPAAVFERWMKRRQ 658


>gi|257059699|ref|YP_003137587.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 8802]
 gi|256589865|gb|ACV00752.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Cyanothece
           sp. PCC 8802]
          Length = 872

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/431 (29%), Positives = 231/431 (53%), Gaps = 9/431 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+PNR+  + ++  +     ++      ++ +D D++K IND LG   GD +L+
Sbjct: 438 YHDPLTGLPNRRLLIRQIQQVNRSQGSESQKLIAILFLDFDRFKTINDGLGHLAGDHLLM 497

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++RR+ E  +   ++ R+ G+ F + L   + + ++  FA A++K ++ P     +EI 
Sbjct: 498 QISRRLQEQSQPQILVGRVGGDEFALCLNQISQAQEVTAFADALQKHLSQPFYWQNQEIY 557

Query: 654 VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKED 710
           +TASIG A         + E+L+ A++AMY AK  G   + V    + +   +R  ++ D
Sbjct: 558 ITASIGIALECVGQNFQAGELLRYADIAMYRAKELGTARHEVFVEGMDTQAVERWQLETD 617

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   ++N E  L Y PII L   +I G EAL++W   K G +S  +F+ +AEE  +I  +
Sbjct: 618 LRAGLQNQEFQLYYQPIISLKTGKIAGFEALVRWVSNKRGFVSPGDFIPLAEETGLIVPL 677

Query: 771 NLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
             ++L+   + I  W +Q     P+ + +N++ +     +L + +Q ++ +      R+K
Sbjct: 678 GQWILQEACQQIQRWHEQFPQIVPLIMSVNLSGRQFTQPDLVKQIQKILDEVNIEGDRLK 737

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES++M + E +  LL RL+ +G+ L++DDFGT  S LSYL   P DT+K + S + 
Sbjct: 738 LEITESMMMNDVETAIDLLRRLKGLGLRLSIDDFGTGYSSLSYLHRFPVDTLKVDRSFVG 797

Query: 890 GSTEKRIA-----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
              E   +     I+R+II +  N++  +IA+ I  E  ++ L  + C+Y Q  + + PL
Sbjct: 798 RMEEGSDSEKYIQIVRTIISLGHNLDLDVIAEGIETEAQVRVLESLNCEYGQGYYFSKPL 857

Query: 945 GFNSILKLLKE 955
                 +LL +
Sbjct: 858 SAKDAEELLNQ 868


>gi|299068720|emb|CBJ39958.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CMR15]
          Length = 906

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 141/582 (24%), Positives = 262/582 (45%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            + +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 319 VSALAKLLRLEGEYRQARDLRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGA 378

Query: 444 SMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRI 499
           S     R  L    +  +     R    S +  R GR        + A + Q  W+   +
Sbjct: 379 SWKSRTRLMLSDMMLAEDGSILPRAAWPSTLAARTGRAVNNVVVGMPAGNGQIVWLRESV 438

Query: 500 RPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +       + I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 439 LPMFSQDSASPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 498

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ I +D +K +N+ +G  +G+ VL    +RI   +    +LARL G++F 
Sbjct: 499 STGQ---AALLYIGLDHFKTVNEAMGHHIGNQVLNVAAQRIRADVGQRALLARLGGDQFC 555

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +       +    A  +  ++A P +  ERE+ ++ASIG A +      ++ ++  AE
Sbjct: 556 VAIEV---PDRAETLAQLVLDALAKPFSGGEREVHLSASIGVAMFPEDGSDAATLVSRAE 612

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+   ++ LVY P   L   E+V
Sbjct: 613 AAMYRAKENGRNRMARYSRALETQLLRRFTLNERMRRALARGQVRLVYQPKYALGTRELV 672

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L++       W          I
Sbjct: 673 AVEALMRWSDPELGAVSPTEFIAVAEESGYIVELGRWALQQACAQGQVWERDLGFTG-RI 731

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   ++  +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 732 AVNVSARQCDAGVIERDVEDALRISGLRPSRLELELTESVLLADRLSTQRLLTSLSTRGV 791

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            ++LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 792 RISLDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 851

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ +
Sbjct: 852 AEGVETPEQTAFLEAHACDEVQGFLFGRPLEVPAMEGLLRSQ 893


>gi|320155462|ref|YP_004187841.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
 gi|319930774|gb|ADV85638.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
          Length = 657

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 233/459 (50%), Gaps = 10/459 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           N+N ++ R     +++ + + + E  +   A+ D LTG+ NR   L  L   L  S   +
Sbjct: 182 NNNDELGRLALSFHNLWQARAAAESQLNQLAYFDTLTGLANRSLLLKSLNETLKESQ-SE 240

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +  +D+D++K IND LG  +GD+++ ++ +R+   L+  +I AR+ G+ F I++ 
Sbjct: 241 QYPGVLFYLDLDRFKTINDSLGHTIGDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIP 300

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N     A+ A  +   I+ P ++ + ++  T SIG +++    I+S ++L+ A+ A+Y
Sbjct: 301 KLN-KEDAANKAKQLLTLISNPYSIDDHQLYCTVSIGISTFADKGISSIDVLRQADTALY 359

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    +           + I++ L  A+   +L L Y P +    ++I+G+EA
Sbjct: 360 RAKVAGRNKYMFYEPEMQAQVESFLEIEKGLHEALHKGQLELYYQPQVNAQ-QQIIGVEA 418

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILI 798
           LI+W+HP+ G +    FM IAEE   I  I  +++E+       W+ +  +P  F  + I
Sbjct: 419 LIRWNHPEKGVLPPGVFMPIAEETGQILQIGDWIIEQACFQYAQWKKEQVLPETFHRLAI 478

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+      N   E +   + +   +   I+L  +ES+++ N E +   +  L+++ + +
Sbjct: 479 NISPLQFSKNAFVEHITHALKQANITGEHIELEITESLLLENVESAINKMAELKELDLKI 538

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L YL ++  D +K + S +T     +   AI+ +II +A+ +   +IA+
Sbjct: 539 SIDDFGTGYSSLRYLKHLAVDVLKIDRSFVTQLHLDQSDQAIVSTIIMIAERLSLEVIAE 598

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  E +   L  +GC+  Q      PL    I + L+E
Sbjct: 599 GVETEEEFNTLVELGCEQFQGYLFGKPLPVEMITQKLRE 637


>gi|322434099|ref|YP_004216311.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidobacterium sp. MP5ACTX9]
 gi|321161826|gb|ADW67531.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidobacterium sp. MP5ACTX9]
          Length = 583

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 137/552 (24%), Positives = 235/552 (42%), Gaps = 33/552 (5%)

Query: 415 GDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWL-----PYIHINDRDNFRTIL 468
              ++ +D      V T        G           N L     P +H    +N     
Sbjct: 42  PLAMFVYDKASLRLVATNARALDQYGYTREEFLALSLNQLLNDPAPIVHDPSAENLLASS 101

Query: 469 DSFVGYRR---GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           +    +R    G L  E R R A                + G  L  + +A DITE KK 
Sbjct: 102 ERVERHRTKSGGSLTVEVRERQA---------------LAEGRTLCLV-VAMDITENKKE 145

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A QD+LTG+ NR S  +R    L  +  + + R  ++ ID+D++K+IND  G 
Sbjct: 146 QARWQTIAMQDSLTGLANRISLEERARQALITARRNGH-RVAILCIDLDRFKQINDWYGH 204

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           ++GD+ L  L  R+   L+  D++AR+ G  F ++L    ++      A  + ++I    
Sbjct: 205 SIGDECLKELGSRLTRRLRGMDVVARVGGEEFTVVLAEVESAQSAMIVANFLLQAIGKVF 264

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSD 703
            +    +T+ ASIG A +      S E+ + A+LAMY AK  G     +       +  D
Sbjct: 265 EVENHTLTMGASIGVAVYPDHGTESDELQRLADLAMYRAKRAGGNRAFIAQESTDPYVDD 324

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  +  A+      L Y    R  +  + G+EAL++      G I    F+ +AEE
Sbjct: 325 GSHMEACIRTALAEETFQLHYQLEYRP-NGTVRGMEALLRLPRQGGGFIEPDRFIPVAEE 383

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L +  R +  W       P+ I +N++   LL  +    +  ++ +   
Sbjct: 384 SGLIYPIGYWVLAQACRQLKMWN-TPGREPMRIAVNVSPLQLLRPDYAVSVMNVVQEWGI 442

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            PS ++L  +E VV+ N +     +  L   GI   +DDFGT  S L +L  +P  TVK 
Sbjct: 443 EPSWLELEITERVVV-NFDEVAKGMRLLHSQGIRFAIDDFGTGYSSLQHLNRLPISTVKI 501

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    +   +  I+ +I+ M  +++  +IA+ +        L R+G D +Q   +A
Sbjct: 502 DRSFVNRICDANGSYPIVEAIVAMGHSLKMEVIAEGVEKREQRAALERIGVDGMQGHLLA 561

Query: 942 SPLGFNSILKLL 953
            P   + I  +L
Sbjct: 562 RPASIDEIEAIL 573


>gi|170728605|ref|YP_001762631.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813952|gb|ACA88536.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 796

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 226/452 (50%), Gaps = 9/452 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  ++ ++K S   +   A  D LTG+ NR   + RL   ++ +  + N +  VM +D
Sbjct: 344 VLLLEEVDKRKASENKLAYQATHDELTGLANRTHSMSRLAQSIESAQVN-NTKVLVMFLD 402

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K++ND +G   GD++L   ++R+   ++  D +AR  G+ F II+    +      
Sbjct: 403 LDNFKQVNDTVGHHAGDELLKLTSKRLLNSVRNTDTVARFGGDEFLIIIPELPHQNMAKM 462

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A ++         +  +E  V+ SIG + +     T++ +LK A+ ++Y AK  G N  
Sbjct: 463 LASSILTLFEQAFKIEGQEFFVSTSIGMSIYPQDGDTAATLLKKADTSLYRAKDAGRNGF 522

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +   ++     ++ +   L  A+   ++ + Y PI+ L   +I+G EAL++W   + G
Sbjct: 523 SFYNDSMNQDIQRKLTLNVRLHQAISLDDIEIYYQPILDLASRKIIGAEALMRWTDSELG 582

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNE 809
            +S  EF+ +AE+  +I  +   +L+R      SW+      P+ + IN +S       +
Sbjct: 583 VVSPDEFIPLAEKNGLIHKLGDIVLQRACSQAASWQSI---TPLKMAINFSSVQFRYSEQ 639

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++++T     ++ +  +ES+++        +L  L+++GI +++DDFGT  S 
Sbjct: 640 LQARIVEVLAQTGLPADKLDMEVTESLLIDQESGLMTMLAYLKQLGIEMSIDDFGTGYSA 699

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL    F  +K + + +     ++   A++ +I+ MAK++E  ++A+ I  E   + L
Sbjct: 700 LSYLQKFSFSKLKIDRAFINKMASSKSDKALVTAILAMAKSLEMKVVAEGIEDEQQAQFL 759

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
              GC++ Q    + P+   +  +LL E+  L
Sbjct: 760 QSHGCEFGQGYLFSRPVTAEAFTQLLMEQESL 791


>gi|171317768|ref|ZP_02906949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MEX-5]
 gi|171097052|gb|EDT41907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MEX-5]
          Length = 667

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 132/642 (20%), Positives = 265/642 (41%), Gaps = 18/642 (2%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
           +        +   + G + A +            + L +A+     +  +    V     
Sbjct: 32  LAAVRGLTNVAVALTGEQAARIRALT---GVTSHLVLDLALFGDTVSLHLVGRKVDTSNW 88

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
                 ++    V   G  S G+    +     V     +V   D              +
Sbjct: 89  AGTASAYSDTASV--AGDLSHGLAFAEQ----VVSEVNSLVVILDRNGMVQRFNRLCEEV 142

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G     + G    +  ++        R+ +  F    R     E  +   +    +   
Sbjct: 143 TGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFASNR-SFAVERYINTVNGPRLFQFR 200

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                S S  D    I    D+TE++ +   +   A  D LTG+PNR +  +R+   L +
Sbjct: 201 NKFVQSGSGVDEQYLICSGIDVTEERNAQLRLSELANTDMLTGLPNRHAISERIGAALAV 260

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
             TD   +  ++ +D+D +K++ND  G   GD +L  ++  I   L     LARL G+ F
Sbjct: 261 DRTDMRGQVGILFLDLDNFKRVNDHYGHITGDRLLQDVSTIISGCLPSGATLARLGGDEF 320

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++         +   A  + + +  PI+L   E+  + SIG A +     +   ++++A
Sbjct: 321 LVLFEHGTRP-LLEATAQIILERLRTPIHLGLMEVYTSCSIGIAMYPQHGDSLETLIRSA 379

Query: 678 ELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK  G +    F   ++   +  + +  +L  A+E  +  L Y P++ L   ++
Sbjct: 380 DTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLRKALEEEQFVLHYQPVVDLATGDV 439

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             +EALI+W  P  G ++  EF+  AEE  +I  +  +++        +   +A    + 
Sbjct: 440 RSVEALIRWQSPDRGLVAPIEFIQFAEESGLIAPLGRWVMRT--AAAQAAAWKAKGLGVR 497

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I +N++++ L D  +     ++++     PS + +  +ES  + + E +  L+   R++G
Sbjct: 498 IAVNVSARQLQDMNIVHQFASILASAGLKPSLVDIELTESSFIEDEETAHELMKEFRQLG 557

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
             + LDDFGT  S LS L  +P D++K + S +T      +  A++RS++ +AK +   +
Sbjct: 558 AKIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFITSVDRNPRSQALVRSVVSLAKALSFAV 617

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +A+ +    + + L ++  D+ Q  + A P+   +    L E
Sbjct: 618 VAEGVETPAEAEFLKQVDVDHAQGFYFARPMPAQAFEAWLAE 659


>gi|17548555|ref|NP_521895.1| hypothetical protein RS00710 [Ralstonia solanacearum GMI1000]
 gi|17430803|emb|CAD17485.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 894

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 140/582 (24%), Positives = 263/582 (45%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            + +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 315 VSALAKLLRLEGEYRQARDLRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGA 374

Query: 444 SMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRI 499
           S     R  L    +  +     R    S +  R GR        + A + Q  W+   +
Sbjct: 375 SWKSRTRLMLSDMMLAEDGSILPRAAWPSTLAARTGRAVNNVVVGMPAGNGQIVWLRESV 434

Query: 500 RPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +       + I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L 
Sbjct: 435 LPMFSQDSASPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALP 494

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ I +D +K +N+ +G  +G+ VL    +RI   +    +LARL G++F 
Sbjct: 495 STGQ---AALLYIGLDHFKTVNEAMGHHIGNQVLNVAAQRIRADVGQRALLARLGGDQFC 551

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +       +    A  +  ++A P +  ERE+ ++ASIG A +      ++ ++  AE
Sbjct: 552 VAIDV---PDRAETLAQQVLDALAKPFSGGEREVHLSASIGVAMFPEDGSDAATLVSRAE 608

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+   ++ LVY P   L   E+V
Sbjct: 609 AAMYRAKENGRNRMARYSRALETQLLRRFTLNERMRRALARGQVRLVYQPKYALGTRELV 668

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L++      +W          +
Sbjct: 669 AVEALMRWSDPELGAVSPTEFIAVAEESGYIVELGRWALQQACAQGQAWERDLGFTG-RV 727

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   ++  +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 728 AVNVSARQCDAGVIERDVEDALRISGLRPSRLELELTESVLLADRLSTQRLLTSLSTRGV 787

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            ++LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 788 RISLDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 847

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ +
Sbjct: 848 AEGVETPEQTAFLEAHACDEVQGFLFGRPLEVPAMEGLLRSQ 889


>gi|323499455|ref|ZP_08104427.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
 gi|323315511|gb|EGA68550.1| PAS/GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
          Length = 679

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 138/573 (24%), Positives = 255/573 (44%), Gaps = 34/573 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLP 454
             + +     R S       D +    +  D  ++  P    +LG    S    +     
Sbjct: 122 LIRSLEESEGRFSTLTSLLPDGLLL--VEEDCIISANPAAIRLLGF--ESTQDLLGESFS 177

Query: 455 YIHINDRDN--FRTILDSFVGY------RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            + ++++    F   L S +G          R  +E RV+   +    +    + +   +
Sbjct: 178 RLFVDEKTKTVFSESLCSTLGEAPLLCLTGPRCGFERRVQLNADSTMVLGSNSQLVLIQD 237

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +              K        +A  D+LTG+ NR  F  RL  ++      +    
Sbjct: 238 AEAT-----------PKLLSNTNQEDAHIDSLTGLYNRFGFTKRLEQLI-----QNETPL 281

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +DID +K IND LG  +GD V+  ++ R+  LL    +L  L G+ FG+IL    N
Sbjct: 282 IMLYLDIDNFKNINDSLGHHIGDKVIKEVSSRLKRLLPQQAVLGHLGGDEFGLILPEPEN 341

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +      +  +   I  P +L      +  SIG  ++      +  +L+NA+ AMY AK 
Sbjct: 342 NRMAEMLSERIISLINQPFDLHHFSKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKD 401

Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G EALI+W
Sbjct: 402 RGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALIRW 461

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G IS   F+ +AE   +I+ +   ++  +   +  W     + P  + IN++ + 
Sbjct: 462 KHPVEGYISPGAFIPVAERAGLIEHLGRVVMREVFSTVKRW-KLQGILPGRVAINLSPEQ 520

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             + +L + M+ L+  T   PS I    +ES VM + + +  +L  ++K+G SL++DDFG
Sbjct: 521 FGNPKLIDYMEKLLRTTELDPSSITFELTESAVMSDSDHTLQMLNAIKKLGFSLSIDDFG 580

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P D +K + + +T      K++ ++ +II + K++  T++A+ +  + 
Sbjct: 581 TGYSSLSYLARFPIDELKIDRAFITDIDTLPKQVTVIENIINLGKSLNLTVVAEGVETQQ 640

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               L+ + C+ IQ  H   P     + +L  +
Sbjct: 641 QATLLSNLNCNSIQGFHFYRPQPKQEVEELFAQ 673


>gi|300696901|ref|YP_003747562.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
 gi|299073625|emb|CBJ53145.1| putative signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum CFBP2957]
          Length = 894

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 140/582 (24%), Positives = 257/582 (44%), Gaps = 16/582 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +L      +      ++  L V    + V         ++     A IL L+  
Sbjct: 315 IGALVKLLRLEGEYRQARDLRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAEILRLSGA 374

Query: 444 SMHGPIRNWL-PYIHINDRDNF-RTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRI 499
           S     R  L   +   D     R    S +  R GR        + A + Q  W+   +
Sbjct: 375 SWKSRSRLMLGDMMLAEDGSILPRAAWPSTLAARTGRAISNVVVGMPAGNGQIVWLRESV 434

Query: 500 RPMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            PM + +       + I  DIT ++ + E +     +D LTG+PNR +F++RL   L L 
Sbjct: 435 LPMFSQDSATPHAVLVIFTDITTERSTYEQLRLLETKDPLTGLPNRAAFIERLDARLALP 494

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +T       ++ + +D +K +N+ +G  +G+ VL     RI   +    +LARL G++F 
Sbjct: 495 STGQ---AALLYVGLDHFKTVNEAMGHHIGNQVLNVAAHRIRADVGQRALLARLGGDQFC 551

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +   + +   +    A  +  ++A P    ERE+ ++AS+G A +      ++ ++  AE
Sbjct: 552 V---TIDAPEQAETLAQQILDALAKPFPGGEREVHLSASVGVAMFPEDGSDAATLVSRAE 608

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N +  +  +          + E +  A+    + LVY P   L   E+V
Sbjct: 609 AAMYRAKENGRNRMARYSRALETQILRRFTLNERMRRALGRGHVRLVYQPKYALATRELV 668

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W  P+ G +S +EF+ +AEE   I  +  + L +      +W    +     +
Sbjct: 669 AVEALMRWSDPELGAVSPTEFIAVAEESGYILELGRWALLQACSQGQAWERDFDFTG-RV 727

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      +   +   +  +   PSR++L  +ESV++ +   ++ LL  L   G+
Sbjct: 728 AVNVSARQCDAGVIERDVDEALGVSGLRPSRLELELTESVLLADRLSTQRLLTSLAARGV 787

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            + LDDFG   S LSYL  +P   +K + S ++G       +A+ ++II MA+ +  T+ 
Sbjct: 788 RIALDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVALTKTIIAMAQALNMTVT 847

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L    CD +Q      PL   ++  LL+ R
Sbjct: 848 AEGVETPEQSAFLAAHACDEVQGFLFGRPLEVPAMESLLRSR 889


>gi|148256883|ref|YP_001241468.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
 gi|146409056|gb|ABQ37562.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
          Length = 833

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 113/450 (25%), Positives = 219/450 (48%), Gaps = 14/450 (3%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  +  + +  +   +   +L  A  D LTG+ NR  FL+ +  I      +   R TV 
Sbjct: 350 VYLVLSSRNARQLALANRRVLELAQTDALTGLANRAFFLEEMERI----NDEKGGRFTVF 405

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D++K +ND LG   GD++LV + +R+   L+  D+LARL G+ F +I    ++   
Sbjct: 406 LLDLDRFKNVNDSLGHGAGDELLVQVAQRLRSQLREEDVLARLGGDEFALIQAGFSDQRA 465

Query: 630 -IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              + A  + + IA P  +  + + +  SIG +           +LK A+LA+Y +K  G
Sbjct: 466 SATELAQRITRLIAEPFQISGQRVEIGTSIGISLAPQHGRDQEHLLKKADLALYRSKSAG 525

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +    +             ++ DL  A+   +  + Y P       +  G+EAL++W H
Sbjct: 526 RSCYTMYDDVMSAELEARNTLEGDLRDAIAQCQFEVHYQPFYDAETRQRRGVEALVRWRH 585

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +   +F+ +AE   +I  +  +++ R   D  SW D      I + +N++     
Sbjct: 586 PVKGLVPPDKFIPLAEATGLIVPLGEWIIGRACDDATSWPD-----DIKVAVNLSPVQFK 640

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             EL + +Q+ ++++   P R+++  +ESV++     +   + +L+ IGISL LDDFGT 
Sbjct: 641 QAELFDVIQSALARSGLDPKRLEIEITESVLLERAAENESFIDKLKGIGISLALDDFGTG 700

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L  L   PF+ +K + S +   +  E+  A++ S++ +A+ +   I A+ +  E  +
Sbjct: 701 YSSLRSLTAFPFNKIKIDKSFIANLSVREESAAVISSVVTLARGLGIQITAEGVETEEQL 760

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + L  +G ++ Q   +  P+    + + L+
Sbjct: 761 RHLCTLGVNFAQGYLLGRPMPVEQLEQHLE 790


>gi|254695991|ref|ZP_05157819.1| GGDEF domain protein [Brucella abortus bv. 3 str. Tulya]
 gi|261216421|ref|ZP_05930702.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260918028|gb|EEX84889.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 765

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|23500704|ref|NP_700144.1| GGDEF domain-containing protein [Brucella suis 1330]
 gi|161621029|ref|YP_001594915.1| diguanylate cyclase [Brucella canis ATCC 23365]
 gi|260567772|ref|ZP_05838241.1| diguanylate cyclase/phosphodiesterase [Brucella suis bv. 4 str. 40]
 gi|23464354|gb|AAN34149.1| GGDEF domain protein [Brucella suis 1330]
 gi|161337840|gb|ABX64144.1| diguanylate cyclase (GGDEF) domain [Brucella canis ATCC 23365]
 gi|260154437|gb|EEW89518.1| diguanylate cyclase/phosphodiesterase [Brucella suis bv. 4 str. 40]
          Length = 765

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRHAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|260459338|ref|ZP_05807593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Mesorhizobium opportunistum WSM2075]
 gi|259034892|gb|EEW36148.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Mesorhizobium opportunistum WSM2075]
          Length = 884

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 143/613 (23%), Positives = 259/613 (42%), Gaps = 37/613 (6%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           A  G LV+I  L+   +I          + +        LA+  S   VW+ D+  + ++
Sbjct: 277 AAAGALVVIPFLVTSRLIGERQRNYAELRRLSRRL---ELALEASAIGVWEHDLATNDLS 333

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
               +  I G  S        +W   IH  D        D  V  R G    E+R+  +D
Sbjct: 334 WDDRVNEIYGKPSDGGPRGYSDWAGAIHPQDLAGANADFDRAVASR-GTYSSEYRIIRSD 392

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDIT---------------------EQKKSLEG 528
            +   +  +   +  +  +  + IG   D+T                     E   +   
Sbjct: 393 GEIRHVRAKAT-IYQAPNETAKMIGAEWDVTADVLLNTDLVRAKQLSESKNAELGAAKAR 451

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D+LTG+PNR+     L      +  D      ++ ID+D++K IND LG A G
Sbjct: 452 IEHIALHDSLTGLPNRRYLDQMLEEYTANAKRD-GCYAALLHIDLDRFKHINDTLGHAAG 510

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +LV  +  +   ++    +AR+ G+ F ++    ++  ++A  A  +   +  P+   
Sbjct: 511 DAMLVHASAVLRSKVENGGFVARIGGDEFVVLCTVNDDIKQLALLADRIISQMGEPVYYR 570

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
                   S+G A        +  +L NA++A+Y AK RG N  E F  +      D   
Sbjct: 571 GHRCRFGVSVGIAVDNRKDAEAKHLLMNADIALYRAKSRGRNRHEFFTEAMQSEIVDTKQ 630

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I ++L   +E +E    Y P       EIVG+EAL +W HPK G ++   F+ IAEEL +
Sbjct: 631 IADELLGGLERNEFIAFYQPQFSAKTLEIVGVEALARWRHPKEGILAPDVFLKIAEELNV 690

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I+  +L +   D   W       P  + +N++++ L D EL + ++ L         
Sbjct: 691 VSTIDRTILNQALSDFQGWSAAGLHIP-RVSVNVSARRLQDEELIKSLREL----NIKKG 745

Query: 827 RIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +     ES+ +  N +     + +++++GI + +DDFGT  + +  L  +    +K + 
Sbjct: 746 TVSFELVESIFLDENDDLVTWNVDQIKQLGIDIEIDDFGTGYASIVSLLKLQPRRLKIDR 805

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            L+     + +R  ++ SII + K++   +IA+ +      + L  +GCD +Q       
Sbjct: 806 QLVIPIVESPQRRQVVSSIIEIGKSLGIEVIAEGVETMEHARVLKGLGCDILQGYAFGQA 865

Query: 944 LGFNSILKLLKER 956
           L  + +  L++ R
Sbjct: 866 LDSDRLKVLVRSR 878


>gi|271969262|ref|YP_003343458.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Streptosporangium roseum
           DSM 43021]
 gi|270512437|gb|ACZ90715.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Streptosporangium roseum
           DSM 43021]
          Length = 870

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 147/770 (19%), Positives = 306/770 (39%), Gaps = 44/770 (5%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R        A +  V+G++ +      +                 +             
Sbjct: 107 LRDLADSYMCAGSLFVIGWVLLLGPSYRQA---DDAGTFAITIAPPLLCLILACAVGPAV 163

Query: 273 LHWNRWHAKVGYITFSGIACIAI-----LFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           L   R    +G    + +A I                     +     A ++L    +  
Sbjct: 164 LPIRRSAWPMGLAALAVLAAITASETGTALARVSGDAPPLLGVWLAPAAFLLLAVVPWSG 223

Query: 328 YHGMK----------GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
                             +A   + A + + +      + + + L   +  P  V  LV 
Sbjct: 224 RTAPAAGPDDEEEEPSVGQATSWLIAALPLILVVAATGVVLLRVLGGRVQGPVPVLALVS 283

Query: 378 --IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
             IV ++   +   ++ TG   + +     +       +GD+V   D           + 
Sbjct: 284 TSIVCVLVVRLFVVLMETGRMRRLVDLGERQLQDLAESTGDVVLLCDYDGVVREIGEGVE 343

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADN 490
              G     + G       YIH  D    +  L +           G      RVRA+D 
Sbjct: 344 ITYGYRPDELVG--GTIFDYIHPEDVPGIQVALRAMSLDEEPVEGPGTCMIACRVRASDG 401

Query: 491 QFHWMIIRI-RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            +        R +   +      +    D+++Q+     +    F D +TG+PNR  F +
Sbjct: 402 TWRPTESVATRHVRGED----LLLVTTRDVSDQEALRNQVAHLTFHDGVTGLPNRAYFEE 457

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R   +L            V+ +D+D +  +ND +G A GD +L    RR+   ++  D L
Sbjct: 458 RTREVLARPGAS---SAVVVFLDLDGFTAVNDSVGHASGDYLLGQAARRLRAAVRADDTL 514

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKI 668
           AR  G+ F ++L +  ++    D A  + ++++  P  + +R+I +TAS+G A +    +
Sbjct: 515 ARWGGDEFAVLLEAAVDAQTAVDLAERLVRTVSSEPFRVADRDIALTASVGVA-FAEDDV 573

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHP 726
           +S ++++NA++AM  AK  GG  VE F           ++   DL  A+  ++  + Y P
Sbjct: 574 SSGDLIRNADVAMARAKDLGGRRVEVFAAHMHADVVRRLELAADLQRALLENQFAIEYQP 633

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           ++ L    +  +EAL++W       +    F+  AE+  +I  ++ ++L    R++ +WR
Sbjct: 634 VVDLATSRVTAVEALVRWWRGS-AFVPPEHFLGPAEDTGLIVPLSEWILREACREVAAWR 692

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
             +      + +N++++ ++     E +++ ++++   PS + L   E +++ + + +  
Sbjct: 693 ASSWDIG--LSLNLSARQIMAPRFVETVESALAESGLPPSALTLEVIEEMLVEDADETIT 750

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIP 904
            L  LR++G+ L +DDFGT  + L++L  +P D +K + S ++G         + R+I+ 
Sbjct: 751 RLSELRRLGVRLAIDDFGTGYASLAFLRQLPVDMIKIDPSFVSGLGRDETLTLLTRTIVR 810

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  ++   ++A+ I     ++ L  MGC   Q   VA P+    +  L++
Sbjct: 811 LGHDLGLIVVAEGIERPEQLELLREMGCTRGQGFLVARPMAARGVDSLMR 860


>gi|254712734|ref|ZP_05174545.1| GGDEF domain-containing protein [Brucella ceti M644/93/1]
 gi|254715803|ref|ZP_05177614.1| GGDEF domain-containing protein [Brucella ceti M13/05/1]
 gi|261217567|ref|ZP_05931848.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M13/05/1]
 gi|261320443|ref|ZP_05959640.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M644/93/1]
 gi|260922656|gb|EEX89224.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M13/05/1]
 gi|261293133|gb|EEX96629.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M644/93/1]
          Length = 765

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|323491480|ref|ZP_08096663.1| PAS/GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
 gi|323314264|gb|EGA67345.1| PAS/GGDEF domain-containing protein [Vibrio brasiliensis LMG 20546]
          Length = 679

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/534 (24%), Positives = 245/534 (45%), Gaps = 17/534 (3%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            ++  P    +LG    S+   +   L  + ++++                 L      R
Sbjct: 152 IISANPAALRLLGF--ESVQDVLGESLSRLFVDEKTKTVFSESLVSSLGEAPLTCLTGPR 209

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQ 545
               +   ++     +  S+  ++    +  D     K        +A  D+LTG+ NR 
Sbjct: 210 CGFERKVQLMADATMILGSDSQLV----LIQDADAAPKLLSPSNQEDAHLDSLTGLYNRF 265

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  RL  ++      ++    ++ +DID +K IND LG  +GD V+  ++ R+  LL  
Sbjct: 266 GFTKRLEQLI-----HNDTALIMLYLDIDNFKNINDSLGHHIGDKVIKEVSSRLKRLLPQ 320

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             IL  L G+ FGIIL    N+      +  +   +  P +L      +  SIG  ++  
Sbjct: 321 HAILGHLGGDEFGIILPEPENNRMAEMLSERIISLVNQPFDLHHFSKRLACSIGSVAYPG 380

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLV 723
               +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + 
Sbjct: 381 DGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVW 440

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P +   D  I G EALI+W HP  G IS   F+ +AE   +I+ +   ++  +   + 
Sbjct: 441 YQPKVNARDFSINGAEALIRWKHPVEGYISPGAFIPVAERAGLIEHLGRVVMREVFTTVK 500

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W     + P  + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E 
Sbjct: 501 RW-KLQGILPGRVAINLSPEQFGNPKLIDYMEKLLRTTELDPSCITFELTESAVMSDSEH 559

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
           +  +L  ++++G +L++DDFGT  S LSYL   P D +K + + ++      K+I ++ +
Sbjct: 560 TLQMLNAIKRLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFISDIDTLPKQITVIEN 619

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           II + K++  T++A+ +  +     L+ + C+ IQ  H   P     + +L  +
Sbjct: 620 IINLGKSLNLTVVAEGVETQQQATLLSNLNCNSIQGFHFHRPQPRQEVEELFAQ 673


>gi|167951332|ref|ZP_02538406.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 622

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 111/432 (25%), Positives = 214/432 (49%), Gaps = 6/432 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E     A  D LTG+PNR  F DRL   L+ +     +   ++ +D+D++K+IND  G 
Sbjct: 191 QERYQQLAQHDTLTGLPNRLLFHDRLNHALNRANRS-KIGLALLFLDLDRFKQINDAFGH 249

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L  + + + E L+  D +ARL G+ F +IL   +    + + A  +   I    
Sbjct: 250 PMGDRLLALVAKDLLEALREEDTIARLGGDEFVVILEGVHGRDHVINVAEKLLAVIGRER 309

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
           +L   ++ +  SIG + +       + +++NA+ AMY AK +G N    +          
Sbjct: 310 SLDSLQMHIGVSIGISLYPEDGEDVTTLVRNADAAMYQAKAKGRNGYAFYTPMLTEVLEA 369

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  +  AVE  +  L+Y P + +   +IVG+E L++W HP+ G +   +F+ +AEE
Sbjct: 370 SFELERAMRQAVEQEQFLLLYQPQVDVESGDIVGVEVLLRWQHPELGLMLPEQFISLAEE 429

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  +++ +  +    W+    + P+ + INI++  L D +    +  L+ +   
Sbjct: 430 SGLILPLGRWLVRQALQQASQWQ-LDGLRPVRLSINISNHQLADVQFASELGELLGQFGL 488

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  I+L  +E+    N E     L  ++ +G+ + +DDFGT  S LSYL   P DT+K 
Sbjct: 489 DPGLIELEVTENSCAENLEILIEHLESIKALGVQIAIDDFGTGYSSLSYLKQFPVDTLKV 548

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + +     + +  AI+R++I + +++   +I++ +    ++  L   GCD  Q    +
Sbjct: 549 DRTFIHDLIGSMENQAIVRAMIVLGRSLGLQVISEGVEQSAELAWLRAEGCDTYQGFLHS 608

Query: 942 SPLGFNSILKLL 953
            P+   +  +L+
Sbjct: 609 QPMSAEAFAQLI 620


>gi|114705189|ref|ZP_01438097.1| GGDEF family protein [Fulvimarina pelagi HTCC2506]
 gi|114539974|gb|EAU43094.1| GGDEF family protein [Fulvimarina pelagi HTCC2506]
          Length = 684

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 223/436 (51%), Gaps = 11/436 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR+ F + L      +  D     ++++ID+D++K +ND LG   GD VL
Sbjct: 255 ATHDELTGVPNRRKFSEILADRCAKT-RDTGAEFSLIMIDLDRFKPVNDTLGHTTGDAVL 313

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGII-LISENNSLKIADFAIAMRKSIAMPINLLERE 651
             +  R+  +++  D LARL G+ F II L S  +   +      +   ++ P  +    
Sbjct: 314 KRVANRLEHVIRASDFLARLGGDEFAIIALGSTGDRSNVLRLCDRIIDVLSRPFIINGHV 373

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           I + AS+G A   +   T+ ++ ++A++A+Y AK  G +  + F  +     ++   ++ 
Sbjct: 374 IELGASLGVAIAPAHGTTADDLTQSADIALYAAKDAGRSTYKLFETAMADEVQLRRSLEI 433

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A+   E  + Y P +     +  G EALI+W HP+ G +S   F+ +AEEL +I  
Sbjct: 434 DLRRALNREEFEVYYQPQVDAKSGDYSGAEALIRWRHPQRGMLSPVVFIPLAEELGLIGP 493

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L +  RD ++W        + + +N++   ++D  L + +++++++T   P+R++
Sbjct: 494 IGNWVLRQACRDAVTWPSH-----LSVAVNLSPAQMMDRRLPKSVKSILNETGLDPARLE 548

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+ ++GN  ++  +L  LR +GI+++LDDFGT  S LSYL   P + +K + S + 
Sbjct: 549 LEITETSLIGNDVQALAVLNELRAMGIAISLDDFGTGYSSLSYLHRFPINRIKIDRSFID 608

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI+++I  +  ++   I A+ I  E         GCD++Q    + P+  +
Sbjct: 609 RIPTDVDSAAIVQAIAKLGGSLGMKITAEGIENEEQWSFSKTEGCDHLQGYLFSKPIPGS 668

Query: 948 SILKLLKERFPLVKNT 963
            I  L   +    +  
Sbjct: 669 EIGALFDTKDSAERAA 684


>gi|86748577|ref|YP_485073.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86571605|gb|ABD06162.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 894

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/581 (22%), Positives = 254/581 (43%), Gaps = 21/581 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGL 440
               + + +      ++ +    +   L V      +          +        IL  
Sbjct: 309 FIIALFEDITDRQVLARELDKTRKFLELVVDNIPVGLTVQSTSSGRYLLANRGAEIILNR 368

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G         +  +        D     +   +  E  +   +    ++  RI 
Sbjct: 369 RREDAIGLTCG--DIFNPKE-ARLIRERDELAVRKGDLMVEEHPISTRNGLRLFVTRRIT 425

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +++  G     I    D+T+++++   +   A+ D LT +PNR SFL  L+ +++    
Sbjct: 426 -VADEAGAESYLIKTHVDVTDRRQTEARMAHMAYHDGLTDLPNRTSFLKSLSQMIEACDA 484

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             +    V+ +D+D   +INDV G A+GD +L+ +  RI +      ++ARL G+ FG++
Sbjct: 485 AVD-EFAVLSVDLDGLSEINDVFGHAIGDQLLIEVASRIEQAS-QGGVVARLGGDEFGLL 542

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A  + K++A    +  + +   A+ G A +      ++ +L NA  A
Sbjct: 543 IDGPQ-PEAARRLAERVSKALARDFEIDGKTVRTGATTGIALFPRDGRDAASLLANASAA 601

Query: 681 MYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM----DEE 734
           ++ AK   RG   + +  +     DR  + +DL  A+ N EL L Y P         + +
Sbjct: 602 LFRAKAHARGSIGLFAPEMDMQIRDRRALHQDLSNAIRNGELSLYYQPQAASKRQIGEGD 661

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IVG EAL +W HP  G +   EF+ +AEE  +I  I  ++L    R+  SW       P+
Sbjct: 662 IVGFEALARWRHPTRGFVPPGEFIPLAEESGLIVEIGEWILREACREAASWPK-----PL 716

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++    L+ +L   +  ++ +T   P R++L  +E V++ + +R   LL RL+ +
Sbjct: 717 QIAVNLSPAQFLNTDLVATVHQVLVETGLQPGRLELEITEGVLIDDFDRGLALLRRLKTL 776

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           G+ +++DDFG+  S L+YL   PFD +K + + +          AI+R++I +   +  +
Sbjct: 777 GVRVSMDDFGSGYSSLTYLQAFPFDKIKIDRAFIMHLGRNVQSAAIVRAVIGLGHGLGVS 836

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++A+ +  +  +  L   GCD +Q   +  P   +    L+
Sbjct: 837 LVAEGVETQEQLDFLVDEGCDAVQGYLIGMPAPIDQYPVLV 877


>gi|73541425|ref|YP_295945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
 gi|72118838|gb|AAZ61101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
          Length = 663

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 130/534 (24%), Positives = 240/534 (44%), Gaps = 11/534 (2%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            + +  T   A +L      +     +    I  ++R+    +L +       R Q + R
Sbjct: 123 GNILQATSASADLLAFPREYLLD--ASIKDIIAFDERERAAHLLQACFRDGVSR-QADIR 179

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              A N   W+ +RI     + G     +    D+T+  + L  +   +  D LTG+ NR
Sbjct: 180 FANAINGTRWIDLRICRHVTAEGRAS-LLLFGADVTKWAQKLHQLTEQSLTDPLTGVGNR 238

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
               +R+             R  + ++D+D +KKIND LG  +GD +L  L++R+   ++
Sbjct: 239 ALIRNRVEAYF-TGDASQRGRFAIALMDLDGFKKINDSLGHEIGDILLKELSQRLVATVR 297

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +ARL G+ F I+L   ++          + +    P +L   ++ VT SIG A  +
Sbjct: 298 SRDTVARLGGDEFVILLDDVSSEEAAVGMLEQIMRVCRQPFHLAGCQVRVTTSIGLAFAS 357

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYL 722
             + T +++L+ A+ AMY AK +G N    +        +++  I++DL  AV N EL+L
Sbjct: 358 GVRETDAQLLRRADRAMYEAKAQGNNRYCLYSSELDHRLNEQFRIEQDLFEAVLNGELFL 417

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI R+  + +  +EAL++W+HP  G+IS   F+ +AE   +I  +  + +      +
Sbjct: 418 HYQPIFRVGPDTVCAVEALMRWEHPA-GSISPEVFVPLAESNGLINHLGAWAIRCACAQL 476

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W+        ++ +N++          + ++  I  T   P R+ L  +E  +M +P+
Sbjct: 477 AAWKANGVALG-YVSVNVSPVQFRHPGFIDSVRTAIRDTGIDPHRLVLEITEGALMTDPK 535

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +  LL  L  +GI   +DDFGT  S LSYL   P   +K + S +     +     I+ 
Sbjct: 536 AAGDLLTELGALGIRFAVDDFGTGYSSLSYLRRFPLSALKIDRSFVADMVDSPHARTIVS 595

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +++ +A+ +    IA+ +  E     L    C+  Q    A  +  N     ++
Sbjct: 596 AVLSLARELGLVAIAEGVETEAQCDLLAAQRCELAQGWRFAKAMAPNDFEDAVR 649


>gi|330875076|gb|EGH09225.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 703

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 207/432 (47%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D+LTG+PNR    DR+   ++    +      +M +D+D +K +ND  
Sbjct: 254 EANHELTHRALHDSLTGLPNRTLLTDRIEQTMNKVRENGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+ + L   D LAR+ G+ F  +L+   +       A+     I  
Sbjct: 313 GHHTGDLLLRHVALRLRQNLHLHDTLARVGGDEFV-LLVELQDQQDALAVAMRQVNEIGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGTTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++    L Y P    +    VG EAL++W+HP  G +    F+ +A
Sbjct: 432 RNQLQLSQDLRSAIKHKHFCLYYQPKFDALTGLPVGAEALLRWNHPAQGLLGPDLFIALA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L    R +  W  Q   P   I +N+++     N L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLNEACRQMREWYTQ-GYPHWRIAVNLSALQFCHNGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILK 951
           +  PL     L+
Sbjct: 671 LGHPLPAQQFLE 682


>gi|303245663|ref|ZP_07331946.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
 gi|302492926|gb|EFL52791.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfovibrio fructosovorans JJ]
          Length = 818

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 139/574 (24%), Positives = 248/574 (43%), Gaps = 21/574 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLA----------VLGSGDIVWDWDIVRDRVTTTPDIATI 437
           QH       +  + ++  ++ LA          V  +   +   D     +        I
Sbjct: 224 QHTRQLERANDELETENAQRRLAEKRLLLFKTAVEATDAAMVITDRRLTVLEVNAACLRI 283

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G A+G +HG       ++  +D    R +LD     RR     E   R+   +   + +
Sbjct: 284 TGFAAGELHGRCAR-ETFLAAHDATLHRAMLDGL--TRRSAWSGECPGRSRSGKTLPLRL 340

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I  +   +      + + +D+T+ K + + +   A+ D LT +PNR  FLDRL   + +
Sbjct: 341 SINALPLDDDAGSHLVLVFSDVTKDKATEKLLKNLAYSDALTALPNRALFLDRLEREISI 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                     ++ +D+D +K IND L  +VGD VL  +  R+   L+  D LAR+ G+ F
Sbjct: 401 GTRRSRG-FALLFLDLDNFKYINDSLSHSVGDQVLSLIAGRMRACLRDEDTLARMGGDEF 459

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +IL    +    A     +  + + P+ +    I V ASIG A + +    S  +++NA
Sbjct: 460 TVILRETTDPAVAARLGEKLVDAASRPLKVEGAAIEVGASIGVALFPADGRDSDALMRNA 519

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK  GG  V  F  +     +  ++   +L  A+E     L Y PI+ +     
Sbjct: 520 DTAMYLAKSEGGGRVRFFEPAIAEEAKARLELKNNLKRAIEEKAFVLRYQPIVSMATGVA 579

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              EAL++W  P  G +    F+ +AEE  +I  I   +L+     +  WR++     I 
Sbjct: 580 EHFEALVRWMRPD-GMVPPDRFIPLAEETGLIIPIGRLVLDMAFARLRRWREEG--SSIR 636

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+     D +  E +          P+ + L  +ES+++ +P+ ++++LGRL   G
Sbjct: 637 LAINISRNQFQDEDFVEDLINRARAAEVDPATVVLEITESMIIADPQAAKVILGRLIVSG 696

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
             + +DDFG   S LS L   P   VK + SL+       +  +++   I + + +   +
Sbjct: 697 FRIAVDDFGVGYSSLSVLVEYPVHIVKLDKSLIKSLEYDVRARSMVSGFIALFQRLGLEV 756

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +A+ +      + L+  GCD  Q      PL   
Sbjct: 757 VAEGVETASQHEFLSLAGCDLAQGWLYGKPLPPE 790


>gi|220923410|ref|YP_002498712.1| PAS/PAC and MHYT sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylobacterium nodulans ORS
           2060]
 gi|219948017|gb|ACL58409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium nodulans ORS 2060]
          Length = 794

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 147/740 (19%), Positives = 306/740 (41%), Gaps = 33/740 (4%)

Query: 225 AWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
            W       + F   L    ++      +  A     L  ++ +   +          +G
Sbjct: 61  IWATHFIAMLAFEPGLPSGYDIGLTVRSLAYAVVLTGLGLAVTLLRRIPFTAGLGGLILG 120

Query: 284 YITFSGIACIAILFCMS---FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
               +        F ++    + P + A+   +            +  HG++      LL
Sbjct: 121 SGIAAMHYTGMAAFEIAGRIIWDPTLVAASLVLGALLGGAALPVALGPHGVRSQTAGALL 180

Query: 341 IPAWILIFIWFIGLWMAI----TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           +   I    +     + I    +  +    +    +   V +       +    LA    
Sbjct: 181 LLGAICSLHFIAMGALTIVPDPSIAISETAVPSRWLAVAVALASGAILLLAGGALALDIR 240

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    + ER       + + +         V+       ++G+A+ ++       L   
Sbjct: 241 DRRTIVESERLRSLANAAVEGLVVC-RDDIIVSANDSFGRLVGIAATAVAESS---LSRF 296

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +     R  L             E  +R A+ +   + + +RP+  + G    +    
Sbjct: 297 LPD--PATRLALTRQSEQL-----IETELRGAEGEMIPVEVIMRPV--TYGRRPHFAVAV 347

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+  ++++   I   A  D LTG+ NR SF  RL   L L+      +  V+ +D+D++
Sbjct: 348 RDLRARRQAEGRIQFLAHHDALTGLANRTSFTQRLDLELKLAEATGR-KLAVLCLDLDRF 406

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND+ G A GD +LV++ R +  +L    ++ARL G+ F  +L + ++++     A  
Sbjct: 407 KEVNDLFGHAAGDAMLVNVARVVTGILGETQMMARLGGDEFA-VLAACDHAITAGHLAER 465

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + +++          + V  SIG A +         +L +A+ A+Y AK  G      F 
Sbjct: 466 ILEALRSENADAAGPL-VATSIGIALYPDDASERDVLLSHADTALYRAKSEGRGTYRFFE 524

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   DR +++ +L  AV   E++LVY P  ++   E++G E L++W HP+ G +S 
Sbjct: 525 HKMGVQVRDRRILEHELRHAVARGEMHLVYQPQTQVETGEVIGFEVLLRWHHPERGAVSP 584

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ IAEE   I  I  ++L +  RD  SW +     P+ + +N+++  +      + +
Sbjct: 585 AVFIPIAEESGAILQIGEWVLRQACRDAASWPN-----PLAVAVNVSAVQIHAPHFVQLV 639

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T   P R+++  +E+ ++ +P R+   L +++ +G+ + +DDFGT  S LS L 
Sbjct: 640 HEVLLQTGLKPDRLEIEITETALIRDPVRALSTLRQVKALGVHIAMDDFGTGYSSLSNLR 699

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +    + E+  AI+RS++ + + +   ++A+ +  + +++ L    C
Sbjct: 700 SFPFDKIKIDPSFIRAVDTNEQTAAIVRSVLGLGRGLGLPVLAEGVETDAELRFLAAENC 759

Query: 933 DYIQDSHVASPLGFNSILKL 952
           D  Q   +  P       + 
Sbjct: 760 DAAQGYLMGRPAPIERFSQF 779


>gi|299533301|ref|ZP_07046685.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298718831|gb|EFI59804.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 860

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 215/439 (48%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S   I   AF D LTG+PNR     +    +  +A +D  +  V+ ID+D++K++N
Sbjct: 410 ERELSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDE-QLAVLFIDLDRFKQVN 468

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L ++  R+  +L+  DI  RLSG+ F  +L    ++  +A+    +++ 
Sbjct: 469 DSLGHPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVLPQC-DAEHVANTIERLQEL 527

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P+N+ +  ++++AS+G A +         ++  A++AMY AK +G      F     
Sbjct: 528 LAEPLNIADTSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGRFCFFSSEMN 587

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R   +R+ ++  L  A+++  L L Y P I +    + G+EAL +W H + G IS + F+
Sbjct: 588 RLAQERLALETALRKALKSGGLRLHYQPQIEMATGRLYGVEALARWTHAELGEISPARFI 647

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + LE   R +  WR +    P  + +N++     + +L   +   +
Sbjct: 648 PLAEECGLIADLGSWALEEACRQLSQWRAKGMEVPA-VSVNLSPSSFHNLDLPRMIADTL 706

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  + L  +ES+++     +   +  +   G+ L++DDFGT  S LSYL  +P 
Sbjct: 707 DRNDLVPQDLTLELTESILLDTNPSTMKTINEVHAHGVRLSMDDFGTGYSSLSYLRRLPV 766

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +      E   A+  +I+ + K++  T++A+ +        L   G    Q
Sbjct: 767 SELKLDRSFVADLEHDEAARALSSAILGIGKSLHLTVVAEGVETPTQSVMLCEQGYPVAQ 826

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL        L  
Sbjct: 827 GFLFARPLTPKEFEHWLAA 845



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 3/142 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +   V       Q       R SL    S   V   D     V        + G  +  +
Sbjct: 114 IATDVTQRRAREQAQQEHLRRLSLVADASDTAVVISDGSSRIVHVNGGFTRMFGWRTEEV 173

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G +   +  +     + F     + +   +   + E  V     Q +W  +   P+ ++
Sbjct: 174 AGLMP--IALLAPQASEAFVDHYRAELRAGQPVGREEI-VVGKHGQRYWAKVISNPILDA 230

Query: 506 NGDILRYIGIANDITEQKKSLE 527
           +G     + +  DIT  K    
Sbjct: 231 DGRWQYTVSMLTDITRSKMHEA 252



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 5/127 (3%)

Query: 407 QSLAVLGSGD---IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             LA L + D    + ++ +         +   ++G       G          + D   
Sbjct: 5   LQLAQLQALDRVMAMAEFGLDGSLHRANDNYLQLMGFTREQSLGRPHRSFCSARLADSAR 64

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           +R I              E R+R +D    W+     P+ ++ G ++  + IA D+T+++
Sbjct: 65  YREIWTHLCAGNAYSGVVE-RLR-SDGSSCWLEATYSPVMDAQGRVIHILKIATDVTQRR 122

Query: 524 KSLEGIL 530
              +   
Sbjct: 123 AREQAQQ 129


>gi|239832628|ref|ZP_04680957.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824895|gb|EEQ96463.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 768

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 147/694 (21%), Positives = 285/694 (41%), Gaps = 42/694 (6%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPM-VTASIARITLASIVLYYTYFIIYHGMK 332
             +RW  +      +    + +L   S +      A +A +T+    +       Y   K
Sbjct: 87  DLDRWETRYLIGASAVCLTLGMLCFFSSFVLRDSFAELASLTVLLASVVSIVGRNYASAK 146

Query: 333 GYERAVLLIPAWILI-FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
               AV+L+ A  L+  +  + L       +   ++ P  +  + +   L  F     + 
Sbjct: 147 ----AVILMSACTLLPVLAGLILAGTPFHVIIGLLLIPYFLSNIQMANGLREF-----LF 197

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIR 450
           A     + +     R   A+      +  +D  +           +L +A  + +HG   
Sbjct: 198 AAVMGKRRLSIVAGRFDAALNNMPQGLLMFDSQQRIAVINNKAKAMLQIAEHTKLHGRKL 257

Query: 451 NWL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + L             D  +    +   +  +R R  ++   +       ++        
Sbjct: 258 DVLLRYCAKKGLFPQTDLKSVHVRMQDLLIGKRARDIFQLSNQ------RYIECIGNQTL 311

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N        + +  D+T++ ++   I   A  D LTG+PNR  F   + ++         
Sbjct: 312 NE-----GAVLMFEDVTQRVEAEARIQHMARYDGLTGLPNRNYFETMVRSL--RPHQKKG 364

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F + + +
Sbjct: 365 TQVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRFVASRFGGDEFVVFVFN 424

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IA     +        +L   ++ +  S G A     +     M  NA+LA+Y 
Sbjct: 425 LRGEADIAGVMDHIMAVATGVYDLDGDQVQIDISAGVAIENVERSDVGSMHINADLALYE 484

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK         F  +     R    +K DL LA+ + E+ +VY PI+      +V  EAL
Sbjct: 485 AKSTEEKSWSVFVDAMDTKYRGRQKLKADLRLAINHGEIKVVYQPIVSAQSLRVVACEAL 544

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W+HP+ G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D+       + +N++
Sbjct: 545 ARWEHPELGFVPPAEFIPLAEEMGIITDITRFMLEQACADCLSWGDRIG-----VSVNLS 599

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DL  N++   +   + K+     R+++  +ES ++ +  ++ ++L RL+  GI++ LD
Sbjct: 600 AIDLKSNDIARDIANALQKSGLPAHRLEVEVTESAIISDRNKTSMVLQRLKNAGINIALD 659

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + + 
Sbjct: 660 DFGTGYSSLSYLNTLPLTKVKVDRSFVRDITTDRRSLMLLRGVTQLSHELGLGVTVEGVE 719

Query: 920 GEIDIKELT-RMGCDYIQDSHVASPLGFNSILKL 952
            E  +  +    G D +Q   +  P+   +I  +
Sbjct: 720 TEEQLALIRVAAGADLVQGYLLGMPVPMEAISAM 753


>gi|126664450|ref|ZP_01735434.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinobacter sp. ELB17]
 gi|126630776|gb|EBA01390.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinobacter sp. ELB17]
          Length = 564

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 119/461 (25%), Positives = 227/461 (49%), Gaps = 17/461 (3%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF---QDNLTGIPNRQSFLDRLTTILDLSATD 561
              ++   + +A DI+    +L+     A+    D +T +PNR    DRL   +  + + 
Sbjct: 108 DEPELKLLLEVAGDISFAMANLDKSQELAYLTHFDKVTDLPNRLLLTDRLQQAMFQADSY 167

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +  +++ +DID++K++ND  G A GD+VL  +  RIG  +   D ++R  G+ F ++L
Sbjct: 168 QGI-VSILYMDIDRFKQVNDSFGHAGGDEVLRRVAERIGACVGKADTVSRWGGDEFIVLL 226

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELA 680
               ++   A  A A+ +++   I L   RE+ V+ SIG A +         ++ +A  A
Sbjct: 227 PG-QSAGDAAGVASAISRALHSLIVLGGSRELFVSCSIGIAEYPHKGGDIDALINSARSA 285

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M   K +GGN+   F         D + ++  L  A+   +  L Y P I ++   ++GL
Sbjct: 286 MSAIKEQGGNNYRHFVAGGDQAFDDGLELETSLRQALGQKQFRLYYQPQIDIVSGRVLGL 345

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G I+   F+ +AE+  +I  I  ++L      + +         + + +
Sbjct: 346 EALLRWHHPTQGMIAPDRFIPLAEKTGLIIPIGEWVLREACSQVAT------QHGLKVAV 399

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++++     +L   ++ ++ +T   P  ++L  +ES ++ + E +   + +L  +G+S+
Sbjct: 400 NLSARQFHQKDLVAMIRRILDETGMPPVNLELEITESALIYDVELAIATMEQLNDLGVSV 459

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFGT  S LSYL   P D +K + S +    +      I+++II MA ++   +IA+
Sbjct: 460 SLDDFGTGYSSLSYLKRFPIDMLKIDKSFIDEVTTDPDSNVIVKTIIVMAHSLGLKVIAE 519

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +  +  +  L   GCD  Q   +A PL     L++  + F
Sbjct: 520 GVETK-QLTMLREHGCDQAQGYLIARPLLCQEALEVAAQTF 559


>gi|88797750|ref|ZP_01113338.1| hypothetical protein MED297_11380 [Reinekea sp. MED297]
 gi|88779427|gb|EAR10614.1| hypothetical protein MED297_11380 [Reinekea sp. MED297]
          Length = 699

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 112/576 (19%), Positives = 248/576 (43%), Gaps = 10/576 (1%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I    ++  L        + +     ++ +   GD V   D         P    I G  
Sbjct: 122 IVEARVRTQLKLKERETTLHNLYRHAAITLDSIGDAVISTDKDGRVRYMNPAAELITGHT 181

Query: 442 SGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +    G     +    I  +   +   +  +    R   + +  ++R    ++  +    
Sbjct: 182 NIEAQGRFIEDIMPLRIGHDGPAHVNPLRLAISEKRNVGMAFNCQLRNQRGKWISVEDSA 241

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ + +GD++  + +  DI E +  +  +  +   D LT +PNR   ++ LT  +  + 
Sbjct: 242 SPLISDSGDVIGGVIVFKDIDESRAMVLKMTHSLQHDQLTNLPNRFLLMEHLTAAIATNK 301

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                +  ++ ++ID++K IN+  G A GD +L  +   + + L   + L+R + + F I
Sbjct: 302 -GQQTKLGLLQLNIDRFKLINEEFGFAFGDSLLKKVANFLKQQLSGEETLSRHNADEFVI 360

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++   N++ ++A+ A+ +++ + +    L   + +TA IG + +      +  ++ +A+ 
Sbjct: 361 LVPKLNDTSELANLALQLKEQLGLFSQTLSGIVNLTACIGLSLYPDDARDAQSLILHADS 420

Query: 680 AMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           A+  AK    +    F    +++    R  I + +  AV N  +  +Y P++      + 
Sbjct: 421 ALKRAKENAIHQGICFYSDEMATQFMTRRKIYKHIKAAVSNQSVITLYQPMVNSQSGRVE 480

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++    +   +   +F+ IAE+  +I  +   M+    +    W+       I I
Sbjct: 481 AVEALMRISDDEGNIVPPIDFIAIAEDTRLILPLGEQMIVNSLKQQQKWQKAGRN--IRI 538

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+     +      +   +      P  I+L  +ES+++    +    +  LR +GI
Sbjct: 539 CLNISPVQFREPGFVGFLTQTLQTMQIDPRMIELEVTESLMLETHAQLTRDIQTLRDMGI 598

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTII 914
           +L++DDFGT  S LSYL  +P D +K + S +    +TE    ++++I  +A N+  + +
Sbjct: 599 TLSIDDFGTGYSSLSYLKDLPVDVLKIDKSFVALAETTEGDTVLIKTIAELANNMGLSSV 658

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           A+ +  E  +  L  +G   +Q  + + P     +L
Sbjct: 659 AEGVETEQQVHYLQNLGISLLQGYYFSKPQPAEDVL 694


>gi|284053998|ref|ZP_06384208.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira platensis str. Paraca]
          Length = 504

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 133/504 (26%), Positives = 233/504 (46%), Gaps = 73/504 (14%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++++K++   +L  AF D LT +PNR  F  +L+  L  S  D N +  V+ +D+D++K 
Sbjct: 1   MSDRKQAQAQLLQAAFYDPLTELPNRSLFNQKLSEALRRSKQDSNYQFAVLFLDLDRFKV 60

Query: 579 INDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +ND LG  +GD +L+ +  R+   +    D +ARL G+ F I++   ++  +  + A  +
Sbjct: 61  VNDSLGHIIGDFLLIEIAHRLEVCVTNPGDTIARLGGDEFTILVDHISDPQQALELAGKI 120

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSK---------------ITSSEMLKNAELAMY 682
            + ++ P  +   EI  TASIG                           + L++A++AMY
Sbjct: 121 HQELSQPFYIQGHEIFTTASIGIVPSRGYALKKSANTDNYHCLLYNNPEDFLRDADIAMY 180

Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA-------------------------- 714
           HAK +G    E F   + +     + ++ DL  A                          
Sbjct: 181 HAKEQGKARSEVFDLSMHTQTLALLQLETDLRKAIFGYQQLNLTPHHISSSESNPLASAI 240

Query: 715 ----------VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
                        ++  + Y PI+ L+   IVG EAL++W HP+ G +S +EF+ +AEE 
Sbjct: 241 SDVSVMPNQLPSLNDFIIHYQPIVCLITGRIVGFEALVRWRHPRRGLVSPAEFIPVAEET 300

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPP---------IFILINIASKDLLDNELCEGMQ 815
            +I  +  ++LE   R + SW+ Q              + I +N++ K L      E + 
Sbjct: 301 GLIVPLGAWVLEESCRQLSSWKQQLQSWDRSPQSVYSTLTISVNLSGKQLNQLNFIEQID 360

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A++++T   P  IKL  +ES+++ N E + + L +L+   I L +DDFGT  S LSYL  
Sbjct: 361 AILARTNCDPKSIKLEITESMLVENFETALIALAQLKARKIHLAIDDFGTGYSSLSYLHQ 420

Query: 876 IPFDTVKFNGSLMTGSTEK----------RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           +P  ++K + S +    E+             I+++II +A N+   + A+ I     ++
Sbjct: 421 LPLKSLKIDQSFVQRLQEEPSHYIDKYNQPQQIIKAIISLAHNLGLEVTAEGIETRQQMQ 480

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L  +GCDY Q    + PL     
Sbjct: 481 FLHHLGCDYGQGYLFSKPLPAEEA 504


>gi|300867968|ref|ZP_07112607.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Oscillatoria sp. PCC 6506]
 gi|300333989|emb|CBN57785.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Oscillatoria sp. PCC 6506]
          Length = 596

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/431 (29%), Positives = 222/431 (51%), Gaps = 5/431 (1%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A +D LT +PNR SF++ L T ++ +  D + R  V+ +D D++K IN+ LG  +GD
Sbjct: 162 LKMALRDRLTNLPNRASFIESLETAINRAKIDSDYRFFVLSLDCDRFKIINNSLGYHIGD 221

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L ++ RR+   L   DI ARL  + F I+L    +       A  + K +  P +L  
Sbjct: 222 ELLTAVARRLEADLSPDDIFARLGDDEFAILLPDRQDISTATKVASEIIKKLTFPFHLQG 281

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
            E+ V+ASIG AS +        +L++A+ A+  AK +G    + F  +     S  + +
Sbjct: 282 YEVFVSASIGIASGSREYSQPEHILRDADSALNRAKEKGKARYQIFDSTMREKASQFLQL 341

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL  A+   E  + Y PII L   +I G+EAL++W HP  G I  ++F+ IAEE  +I
Sbjct: 342 ETDLRKAIIKKEFCVHYQPIIDLKTGKIAGVEALLRWQHPTRGLIYPADFIPIAEETGLI 401

Query: 768 KAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
             I  ++L    R +  W+          + +N ++      +L E + A++++T  +P 
Sbjct: 402 TPIGNWVLGESCRQLRLWQIAGIAGESFSVSVNFSAHQFAQADLIEQIDAILAETQLNPQ 461

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +KL  +ES ++ N + + L++ +LR   I L+LDDFG   S LSYL   P +T+K + S
Sbjct: 462 CLKLEITESAIIENTQSAALIIQQLRARQIQLSLDDFGMGYSSLSYLNSFPVNTLKVDKS 521

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           ++ +I+ +A+ +   +IA+ I     + +L  + C + Q    + PL
Sbjct: 522 FVQRLDGNSENLGLVPAIMCIARTMGMNVIAEGIETTQQLDQLRNLNCHFSQGYLFSRPL 581

Query: 945 GFNSILKLLKE 955
               +++L+  
Sbjct: 582 EAQKVVELIAS 592


>gi|256157367|ref|ZP_05455285.1| GGDEF domain-containing protein [Brucella ceti M490/95/1]
 gi|256253653|ref|ZP_05459189.1| GGDEF domain-containing protein [Brucella ceti B1/94]
 gi|261220788|ref|ZP_05935069.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|265995855|ref|ZP_06108412.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
 gi|260919372|gb|EEX86025.1| diguanylate cyclase/phosphodiesterase [Brucella ceti B1/94]
 gi|262550152|gb|EEZ06313.1| diguanylate cyclase/phosphodiesterase [Brucella ceti M490/95/1]
          Length = 765

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANRLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|254703294|ref|ZP_05165122.1| diguanylate cyclase [Brucella suis bv. 3 str. 686]
 gi|261753926|ref|ZP_05997635.1| diguanylate cyclase/phosphodiesterase [Brucella suis bv. 3 str.
           686]
 gi|261743679|gb|EEY31605.1| diguanylate cyclase/phosphodiesterase [Brucella suis bv. 3 str.
           686]
          Length = 765

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINDKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRHAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|289670494|ref|ZP_06491569.1| putative signal transduction protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 920

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 136/611 (22%), Positives = 250/611 (40%), Gaps = 12/611 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V L+G   +Q+V         I    E  +
Sbjct: 303 FELEINGLLGANPHHLRVWAQPVFDGDGSMVRLLG--QLQNVTEQRQTDALIRWRTELLN 360

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 361 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 418

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G  LR++ +  DIT ++++ E 
Sbjct: 419 LRISDGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPLRFVALFRDITREREANER 476

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K IND  G A G
Sbjct: 477 IELLAHYDRLTGLPNRFLLREQAENAIREANERGQV-LAMLLIDLDGFKSINDSFGHATG 535

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 536 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 595

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 596 HVTVKLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTFHYYSQDVLLRAQRRLE 655

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+E  E  LVY P++  + +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 656 LEHALQGALEREEFTLVYQPLVNTVGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 715

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 716 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPS 774

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 775 RLELEMTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 834

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 835 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 894

Query: 945 GFNSILKLLKE 955
               + + L+E
Sbjct: 895 SPRDMAQWLRE 905



 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 100 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEPPLPNNLTALSGLIHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 160 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLREQ 227



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+ +  +HG IR+ L  
Sbjct: 220 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMTNVRLHG-IRDVLRL 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 279 LGRPSVAQLRSAWRK-IKHEGMPVHFELEINGLLGANPHHLRVWAQPVFDGDGSMVRLLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|327190348|gb|EGE57446.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 927

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 253/575 (44%), Gaps = 15/575 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           LIG+  I    +          +  R   +A+   G  +  +D     +        I  
Sbjct: 354 LIGYAKITKDNSKQKADADRIEEVSRNLDVALENIGQGICMFDGDERLLLCNKRYLEIFK 413

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              GS+H  +  +   + +    +     ++        ++    +RA            
Sbjct: 414 FPEGSVHAGM-GYRQIVEVGYAAHAADPNEAMAQAEAHYIRNMALIRAGAGSAVHKYPSG 472

Query: 500 RPMSNSNGDIL--RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +      +    ++    DIT++ KS E ++  A  D LTG+PNR  F + +   + +
Sbjct: 473 MSIQQHVNMLANGGWVVTFEDITDRLKSEEQVVFLAKHDGLTGLPNRLQFGESVAEEMMI 532

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +         V+ ID+DK+K+IND  G A GD VLV L RR+ E  +  + +AR  G+ F
Sbjct: 533 ADRVRG-NVAVIGIDLDKFKEINDQHGHATGDKVLVELARRLEEARQEGEFIARFGGDEF 591

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
                  +    + DF   +  ++   + +   EI   AS+G A + S  ++   +L NA
Sbjct: 592 AA-TKRFDELSALHDFIGRLEGALTGTVAIDGFEIKTGASLGVALYPSDAVSVDGLLANA 650

Query: 678 ELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY AK             +      R  +  DL  +++ +EL+L Y     +   EI
Sbjct: 651 DLAMYRAKQSLLQRVCFYEAAMDENARRRRALANDLWASIDRNELHLHYQVQKSVRTGEI 710

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G E L++W H   GNI   +F+ +AEE   I  I  ++L    R+  SW +        
Sbjct: 711 TGYEVLLRWRHHARGNIPPMDFIGLAEECGAILPIGEWVLREACREAASWNNSY-----K 765

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I +N++   L   ++   +  ++++T  +P R+++  +ES ++ + +++   +  ++ +G
Sbjct: 766 IAVNLSPIQLGHADMAAVISGILAETGLNPRRLEIEITESSIIVDKDKALRTMRAIKALG 825

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           +S+ +DDFGT  S L  L   PFD +K + S M    ++ +  AI+R+I+ + +++E  +
Sbjct: 826 VSIAIDDFGTGYSSLETLRSFPFDKIKLDKSFMAEVETSPQSKAIVRAILALGRSLEVPV 885

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +A+ +  +  +  L+   CD  Q   +  P     
Sbjct: 886 LAEGVETQAQLDTLSEEQCDEAQGYLLGRPQAMGE 920



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 13/255 (5%)

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
              +    +L           AS   +++   V +      + G  G      L P  +L
Sbjct: 123 IGLMHFSGMLAIEFPGEISWDASFVVVSVVLGVAFSVAAFHFAGRSGRSTFGRLAPTALL 182

Query: 347 IFIWFIGLWMAITK---------RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
                   + A                 ++ PAL+   +        T           S
Sbjct: 183 TLGVVTLHFTATAGVTVIPGITALDPAMLLSPALMAVTIAAATFSLLTAGFAAAIFAVRS 242

Query: 398 QGIFSDGER-QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
           Q   +  ER   L V G  D  ++  D                G ++  + G   ++  +
Sbjct: 243 QAKAASAERNFKLLVQGVTDYAIYMLDPDGKVSNWNAGAERTKGYSADEIVGK--DFSLF 300

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +         G+ + +      D    W  + I P+ +  G ++ Y  I
Sbjct: 301 YSAEDRRKGLPLRALETARSDGKFEAQGWRYRKDGSSFWAHVVIDPIYDETGQLIGYAKI 360

Query: 516 ANDITEQKKSLEGIL 530
             D ++QK   + I 
Sbjct: 361 TKDNSKQKADADRIE 375


>gi|326403202|ref|YP_004283283.1| hypothetical protein ACMV_10540 [Acidiphilium multivorum AIU301]
 gi|325050063|dbj|BAJ80401.1| hypothetical protein ACMV_10540 [Acidiphilium multivorum AIU301]
          Length = 792

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 151/765 (19%), Positives = 304/765 (39%), Gaps = 57/765 (7%)

Query: 213 NRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R  +         +V G I+IDFG             ++           +L  F   +
Sbjct: 42  LRIRLTRVASIAGLLVAGAIAIDFG------ATTRRPAVLAAFLLLQLTYVALFCFTVAW 95

Query: 273 LHWNRWHAKVGYITFSG--IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
               R  A           +     +F  ++   ++ AS        + +          
Sbjct: 96  PLVRRRVAGFDRARVLFNRLLFALGVFWAAYLILLMRASGPASQALILSIMCGLISTTIA 155

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI--- 387
                       +  L F   +     I   + +D+ +P  V  + +    + FT++   
Sbjct: 156 AG--------PLSSTLAFWTPLTAGAFIALNVSHDLWRPVFVVSVAIYSAFVFFTMVAVN 207

Query: 388 QHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + +L     +  +    E   + +      + D +W+ D   + V  +  +A +    +G
Sbjct: 208 RRMLERSVNALELKRTSETIQMLLRDFEENASDWLWETDAALNLVHPSARLAEVAHRPAG 267

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA----------DNQFH 493
            + G + +++        D                L+ + R+R              +  
Sbjct: 268 EIRGNLFDFMAGT-----DAALASPADPAIDPYAELRRQIRMRRPFRDLVVPVSAAGERR 322

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +  +P  +  G    Y G+ +D+T  ++S + I   A  D LT + NR +F   L  
Sbjct: 323 WWSLTGKPTLDHEGAFAGYRGVGSDVTAMQRSRQRIDFLAQHDTLTELINRAAFGVLLDR 382

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L      +     ++ +D+D++K +ND  G  +GD +L ++  R+   ++  D  ARL 
Sbjct: 383 ALA---PGNACGAALLYLDLDQFKAVNDSYGHGLGDILLRAVASRLRNAIRETDTAARLG 439

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L S N+ +     A  + + ++ P       + +  SIG A   +       +
Sbjct: 440 GDEFAVLLPS-NSRIDATAMADRIIERLSRPYRFDGVSVEIGVSIGIALAPADGDRQDLL 498

Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            +NA+LA+Y AK+ G      F   +     ++  ++ D+  A+ + +L++ Y P++ L 
Sbjct: 499 FRNADLALYRAKNDGRGTWRLFDQAMDRQVQNQRSLRRDIKRALHDGQLFVEYQPVVCLR 558

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              I  +EAL++W HP+ G I   +F+ IAE   +I A+   +L   A   I        
Sbjct: 559 TRRIRSVEALVRWRHPQRGIIGPEDFIAIAERCGLIGAVTRHVLTEAASLAIRLPSS--- 615

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + IN+++  L +  L + + A+IS +  +P R++   +E+ ++   +R+   L RL
Sbjct: 616 --VSVAINLSALHLREALLFDQLSAVISTSGLAPERVEFEVTETALLTTDDRTIDNLRRL 673

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNI 909
           R+ G  + +DDFGT  + LS L   PFD +K + S +   G  E    I+++I+   + +
Sbjct: 674 RRFGCRIAIDDFGTGFASLSTLRSFPFDRLKIDRSFIHELGRAENGERIVKAIVEFGQTL 733

Query: 910 ETTIIAKDIYGEIDIKEL---TRMGCDYIQDSHVASPLGFNSILK 951
              I  + +  E     L     +     Q    + P+  + I+ 
Sbjct: 734 GLLITVEGVETEEHAAMLYGYRDID---AQGYLFSPPVSGDRIVA 775


>gi|163802314|ref|ZP_02196208.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. AND4]
 gi|159173843|gb|EDP58657.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. AND4]
          Length = 679

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 136/542 (25%), Positives = 248/542 (45%), Gaps = 33/542 (6%)

Query: 427 RVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR--------RG 477
            +   P  A +LGL +S  + G     L +I  N +  F   +++ +  +        R 
Sbjct: 152 IIYANPASARLLGLNSSHELLGEELTRL-FIDENSKKVFTRRINTLLSEKPFVCLTSTRC 210

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
             + + ++ A +        +I  + +++                K        +A  D+
Sbjct: 211 GFERKVQLHADNTAILGSESQIILIQDADDTP-------------KLLSSNPNEDAHIDS 257

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT + NR  F  RL  +L            V  +DID +K IND LG  +GD V+  ++ 
Sbjct: 258 LTKLYNRFGFTKRLEQLLK-----SQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSS 312

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L    I+  L G+ FGIIL    NS      A  +   I  P +L      +  S
Sbjct: 313 RLTRSLPNHAIIGHLGGDEFGIILPEPENSRMAEILAERIISLINQPFDLHHFSKRLACS 372

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAV 715
           IG   +      +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A+
Sbjct: 373 IGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKAL 432

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           + + L + Y P +   D  I G EAL++W HP  G IS   F+ +AE   +I+ +   ++
Sbjct: 433 QQNGLEVWYQPKVNARDFTINGAEALVRWKHPVEGYISPGAFIPVAERAGLIERLGRVVM 492

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
             +   +  W     + P  + IN++ +   + +L + M+ L+  T   PS I    +ES
Sbjct: 493 RDVFNTVKRW-KLQGILPGRVAINLSPEQFGNPQLIDFMEKLLRTTELDPSCITFELTES 551

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--E 893
            VM + + +  +L  ++K+G +L++DDFGT  S LSYL   P D +K + + ++      
Sbjct: 552 AVMSDNDHTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFISDIDTLP 611

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K++ ++ +II + K+++ T++A+ +        L+ + C+ IQ  H   P   + + +L 
Sbjct: 612 KQVTVIENIINLGKSLDLTVVAEGVETHQQATLLSNLQCNSIQGFHFYRPQPKHEVEELF 671

Query: 954 KE 955
            +
Sbjct: 672 AQ 673


>gi|27365079|ref|NP_760607.1| C-di-GMP phosphodiesterase A-like protein [Vibrio vulnificus CMCP6]
 gi|37680869|ref|NP_935478.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
 gi|27361225|gb|AAO10134.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           CMCP6]
 gi|37199618|dbj|BAC95449.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
          Length = 687

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 233/459 (50%), Gaps = 10/459 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           N+N ++ R     +++ + + + E  +   A+ D LTG+ NR   L  L   L  S   +
Sbjct: 212 NNNDELGRLALSFHNLWQARAAAESQLNQLAYFDTLTGLANRSLLLKSLNETLKESQ-SE 270

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +  +D+D++K IND LG  +GD+++ ++ +R+   L+  +I AR+ G+ F I++ 
Sbjct: 271 QYPGVLFYLDLDRFKTINDSLGHTIGDNLMRTIAKRLEAWLQPGEIAARIGGDEFAILIP 330

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N     A+ A  +   I+ P ++ + ++  T SIG +++    I+S ++L+ A+ A+Y
Sbjct: 331 KLN-KEDAANKAKQLLTLISNPYSIDDHQLYCTVSIGISTFADKGISSIDVLRQADTALY 389

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    +           + I++ L  A+   +L L Y P +    ++I+G+EA
Sbjct: 390 RAKVAGRNKYMFYEPEMQAQVESFLEIEKGLHEALHKGQLELYYQPQVNAQ-QQIIGVEA 448

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILI 798
           LI+W+HP+ G +    FM IAEE   I  I  +++E+       W+ +  +P  F  + I
Sbjct: 449 LIRWNHPEKGVLPPGVFMPIAEETGQILQIGDWIIEQACFQYAQWKKEQVLPETFHRLAI 508

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+      N   E +   + +   +   I+L  +ES+++ N E +   +  L+++ + +
Sbjct: 509 NISPLQFSKNAFVEHITHALKQANITGEHIELEITESLLLENVESAINKMAELKELDLKI 568

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L YL ++  D +K + S +T     +   AI+ +II +A+ +   +IA+
Sbjct: 569 SIDDFGTGYSSLRYLKHLAVDVLKIDRSFVTQLHLDQSDQAIVSTIIMIAERLSLEVIAE 628

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  E +   L  +GC+  Q      PL    I + L+E
Sbjct: 629 GVETEEEFNTLVELGCEQFQGYLFGKPLPVEMITQKLRE 667


>gi|327395232|dbj|BAK12654.1| transcriptional regulator GntR family YdcR [Pantoea ananatis
           AJ13355]
          Length = 698

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 148/709 (20%), Positives = 287/709 (40%), Gaps = 78/709 (11%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--- 341
           +  S +  +   F        V  S  ++ L  ++       I      +   + +    
Sbjct: 11  VVISVLVAMLASFTALDMAGRVATSTGKVALVWLLGGGFAMGIGIWAMHFIGMLSMDLDM 70

Query: 342 -------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-LAT 393
                     +   I       A+      ++  P L GG   IV+  G   + +  +A 
Sbjct: 71  MMSYDARLTALSAGIAVCASIFALWLVCHGELPLPRLAGGA--IVLGSGIVAMHYTGMAA 128

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQGI                  W W ++   +     +A +              WL
Sbjct: 129 LMLSQGIV---------------WNWGWVLISVIIALAASVAAL--------------WL 159

Query: 454 PYIHINDRDNFRTILDSFVG----------YRRGRLQYEF----RVRAADNQFHWMIIRI 499
            +      +     L               +  G +  EF        A    +W+ + +
Sbjct: 160 AFKLREGHEGRVATLRVCASVVMGTAIAGMHYTGMMAAEFPAGSHSMDAGVNSNWLAMVV 219

Query: 500 RPMSNSNGDILRYIGIANDITEQKKS------------LEGILCNAFQDNLTGIPNRQSF 547
             ++ +   IL    + + +  + ++               +   A  DNLT +PNR   
Sbjct: 220 TVVTLA---ILGITLLVSMLDARMQARTSILASSLAEANRELAQLALHDNLTRLPNRILL 276

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            DRL   ++ +   +  +  +M +D+D +K +ND  G  +GD +L+S+T R+ E +K   
Sbjct: 277 EDRLEQAINKANR-ECSQFALMFMDLDGFKAVNDAFGHHIGDSLLISVTERMSEQMKGYY 335

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            LARL G+ F +++         A  A  + K++  P ++   ++ V+ SIG   +    
Sbjct: 336 TLARLGGDEFVLLIE-ITEPNDAAAVADQLVKAVDRPFSISRYDLVVSLSIGIVVYPGDG 394

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYH 725
               E++ NA+ AMYH K+ G N    F+ S       ++ +  DL  A++N EL L Y 
Sbjct: 395 EDERELMFNADAAMYHTKNNGRNGYTFFQPSMNILAQSQLQLNNDLWHALDNDELRLYYQ 454

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P        I+G EAL++W HP+ G +S   F+ +AE+  MI  I  +++    R +  W
Sbjct: 455 PKFCAPHGPILGFEALLRWQHPRHGLLSPDCFLPMAEKTGMIVNIGNWVINEACRQLHQW 514

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q   P   + +N+++     + L + ++  ++      +++ L  +E+  M NP+ S 
Sbjct: 515 HLQ-GHPEWSVAVNLSAMQFEQSNLVDTVKQALALHHIPAAQLTLEVTETTAMRNPDDSV 573

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSII 903
            +L  L ++G+  ++DDFGT  S L YL  +P   +K + + +       +   I+ +I+
Sbjct: 574 RILTELTELGVKASIDDFGTGYSSLLYLKRLPASELKIDRAFVNELQHQSEDATIVSAIV 633

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +A+++   ++A+ +        LT +GC+ +Q   +  PL    I ++
Sbjct: 634 ALAQSLHLKVVAEGVETPEQQAFLTDLGCNTLQGYLLGRPLPPERIEEM 682


>gi|291619602|ref|YP_003522344.1| YciR [Pantoea ananatis LMG 20103]
 gi|291154632|gb|ADD79216.1| YciR [Pantoea ananatis LMG 20103]
          Length = 685

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 142/535 (26%), Positives = 243/535 (45%), Gaps = 21/535 (3%)

Query: 417 IVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGY 474
            +   D+   D +   P    +  L      G  R  LP    ++    FR   D     
Sbjct: 161 ALILCDVASGDIIRANPTAMNLSCLQERVRSGNTRTALPAGLPDNLAAVFRQAFDLLPDQ 220

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                     V + DN+  + +       NS G     +    D+T + ++       A 
Sbjct: 221 GFSET-----VSSGDNEPEFSLRISAERLNSGGGDDYLLYTILDVTAEYQAAVRANHLAL 275

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR+  +  L T+L     D +    VMV DID++K +NDVLG A GD +L+ 
Sbjct: 276 HDPLTGLLNRRGLMPELETLL-----DGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLLIE 330

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+  +L+  DILAR  G+ F  +L   +++   ++ A  +   +  P  L  R++T 
Sbjct: 331 VSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLKEPFMLKGRKVTS 390

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLC 712
             S G   +      +  ML  A++A+Y AK  G      F        ++R  ++ DL 
Sbjct: 391 GCSFGVCLFPGYARDAESMLSAADIALYAAKSAGRKGWVIFTDELASSAAERFSLENDLR 450

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+EN EL + Y P++  + EE+V  EAL++W+HP  GN+S   F+ +AE+  +I  I  
Sbjct: 451 GALENGELQIFYQPVVCSISEEVVSYEALLRWNHPVRGNVSPDVFIPLAEKTGLIHDIGA 510

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           F LER   D+  W          + +NI+ +   D +L   ++ ++ ++   P+R++L  
Sbjct: 511 FALERACNDMAEWSGHE-----RVAVNISPRQFRDPQLANRVKTVLIESGLHPNRLELEI 565

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES +  NPE S  ++ R R  GI + LDDFGT  S L++L    F  +K + S +    
Sbjct: 566 TESALFDNPEGSYEMIRRFRDTGIHIVLDDFGTGFSSLNHLSSGLFSRIKIDRSFINDLH 625

Query: 893 EKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                 AI+ S++ + + ++  + A+ +      + L    C  +Q      P  
Sbjct: 626 LDSGAAAIVSSVLSLCRQLQVEVTAEGVETPAQAEWLKTNECPLLQGYLFGRPGP 680


>gi|254700176|ref|ZP_05162004.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|256015739|ref|YP_003105748.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|261750670|ref|ZP_05994379.1| diguanylate cyclase/phosphodiesterase [Brucella suis bv. 5 str.
           513]
 gi|255998399|gb|ACU50086.1| GGDEF domain protein [Brucella microti CCM 4915]
 gi|261740423|gb|EEY28349.1| diguanylate cyclase/phosphodiesterase [Brucella suis bv. 5 str.
           513]
          Length = 765

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|326411138|gb|ADZ68202.1| GGDEF domain-containing protein [Brucella melitensis M28]
 gi|326554430|gb|ADZ89069.1| GGDEF domain-containing protein [Brucella melitensis M5-90]
          Length = 753

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 72  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 131

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 132 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 183

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 184 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 243

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 244 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 297

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 298 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSL--RPHQDQNS 350

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 351 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 410

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 411 HDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 470

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 471 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 530

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 531 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 585

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 586 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 645

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 646 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 705

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 706 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 735


>gi|78777165|ref|YP_393480.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497705|gb|ABB44245.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 1004

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 129/581 (22%), Positives = 248/581 (42%), Gaps = 10/581 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +++ +     + +  + +     +     I+   D              ILG +   + G
Sbjct: 307 RNITSRKELEKNLLQERDLFKHYLNTVEAIIVSLDKEGHINLINRKGCEILGYSEEELIG 366

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSN 506
            +                 +    V       + +E ++ +   + + +      + + +
Sbjct: 367 KLWFDFCLEQPEGMKIIYPLFLKIVSGGLEGSEYFENKIVSKSKKKYLIAWHNAYLLDDD 426

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +I+  +    DIT  K+  + +   A  D LT +PNR    DRL   +  +  D  L  
Sbjct: 427 KNIIGTLSSGEDITLLKEQQKHLEHIAHYDTLTSLPNRTLLSDRLKQAMLQTQRD-KLFS 485

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D +K++ND  G   GD +L  L+ RI ++L+  D +ARL G+ F I+L    N
Sbjct: 486 AVIYLDLDGFKEVNDTYGHNHGDILLKVLSSRIKQILRDVDTIARLGGDEFVIVLYDIKN 545

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAK 685
                     +  +IA P+   E  + V+AS G + ++    I + ++L+ A+ AMY AK
Sbjct: 546 KEDCFPMLNRILSTIAKPVKSKEITMQVSASAGVSFYSYEDIIDADQLLRQADQAMYQAK 605

Query: 686 HRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F V   +  R   +    + +A++N E  + Y P + +   +I+GLEAL++
Sbjct: 606 LSGKNRFHIFDVQLDKHIRSHHESLEAIEVAIKNREFVMYYQPKVNMRSGKILGLEALVR 665

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP  G +S + F+   E   +   +   ++  +   I  W+ + +   + + INI+  
Sbjct: 666 WEHPLHGLLSPAHFLPTIENHKLSVELGNLIINTVMGQIQKWKQEGHN--LVVSINISPM 723

Query: 804 DLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            + +      +  L+        S  +    ES  + +      ++    KIGIS  LDD
Sbjct: 724 QIQEANFTAKIINLLKNYPEVKTSDFEFEILESSALEDINHVSRIMRECNKIGISFLLDD 783

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P   +K + + +         +AIL  II +A      +I++ +  
Sbjct: 784 FGTGYSSLTYLKNLPAKQLKIDQTFVRDMLEDTDDMAILEGIIGLANAFRRDVISEGVEN 843

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
                 L R+GC+  Q   +A P+    ++K + +  P  +
Sbjct: 844 IEQGNMLLRLGCEEAQGYFIAKPMPSQEVMKWINQWTPPAQ 884



 Score = 43.0 bits (100), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 6/143 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGS 444
           +++ +       + +      Q   +     +VW  D     +     +A   G      
Sbjct: 180 LMRELKMRENLKEKLIYQEHYQRALIDNFPFLVWLKDEKSRFLALNQPMAKACGFDLPEE 239

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G        I   +        D+ V         E  +   D    W      P+  
Sbjct: 240 VVGKTDYD---IWPKELAKSYRKDDANVLASGESKTVEEPIVTKDG-VIWSETYKSPVK- 294

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
            +G ++  +G + +IT +K+  +
Sbjct: 295 VDGKVIGTVGFSRNITSRKELEK 317


>gi|17545229|ref|NP_518631.1| hypothetical protein RSc0510 [Ralstonia solanacearum GMI1000]
 gi|17427520|emb|CAD14038.1| probable signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 701

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 213/436 (48%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   K+   +   A  D+LT + NR    DRL   +  + ++      +M +D+D +K I
Sbjct: 250 TSLAKANRELAYLALHDSLTKLSNRLLLEDRLDQAIQAAGSNRG-SFALMFLDLDGFKAI 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G   GD +L  + RRI   ++  D +AR+ G+ F  +L            A A+  
Sbjct: 309 NDVYGHHAGDLLLADVARRIVACVRQQDTVARVGGDEFV-VLAGVGEPADAGTLADALLA 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           ++  P  +    + V+ SIG A +        ++L NA+ AMYHAK  G +    F   +
Sbjct: 368 AVRAPFLVDGHALRVSTSIGIALYPDDGAGQHDLLTNADAAMYHAKGMGRDTYCFFEASM 427

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++    ++ + +DL LA+E  EL L Y P        +VG+EAL++W HP+ G +    F
Sbjct: 428 NTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPERGLVQPDAF 487

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  ++L+   R +  WR +       I +N+++       L + ++  
Sbjct: 488 IPLAEKTGLIVPLGAWVLDEACRQMAQWRRE-GHAQWSIAVNLSAVQFAHAALVDTVRDT 546

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 547 LARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSLLYLKRLP 606

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +       +  AI+ +++ + + +   I+A+ +  E     LTR+GC  +
Sbjct: 607 ASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLTRLGCHAL 666

Query: 936 QDSHVASPLGFNSILK 951
           Q + +  P+   ++L+
Sbjct: 667 QGNLLGRPMTAQAVLE 682


>gi|158333740|ref|YP_001514912.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158303981|gb|ABW25598.1| diguanylate cyclase/phosphodiesterase with GAF domain
           [Acaryochloris marina MBIC11017]
          Length = 787

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 235/450 (52%), Gaps = 17/450 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL---------SATDDNLRPTVMVI 571
           E  ++ E +   A  DNLTG+P+R  F ++L   L           S   +     ++ +
Sbjct: 325 EGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQQVQRQQLEGYSRQAELCHFAILFL 384

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND LG +VGD +LV++ +++ E L+  D+LARL G+ F I+L    N  +  
Sbjct: 385 DVDHFKLVNDSLGHSVGDQLLVAIAQQLKESLRPQDLLARLGGDEFAILLDGVVNHQQAH 444

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +++S+A P+ L ++E+  + SIG    TS      E+L++A+ AMY AK  G   
Sbjct: 445 KIVQRIQRSLAKPLKLNQQEVFTSVSIGITHSTSLYQHPEELLRDADTAMYRAKAHGRGG 504

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVE-----NSELYLVYHPIIRLMDEEIVGLEALIQW 744
              F  +  +  R  +     L  AV+      +   L Y PI  L  + ++G EAL++W
Sbjct: 505 YVVFDETMHKQVRSRLWLGNSLRYAVKAIEQGQNPFLLQYQPIFCLRQQRLIGFEALLRW 564

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS  +F+ +AEE  +I  +  ++L+   + +  W  +    P+ + IN++S+ 
Sbjct: 565 HHPQQGLISPEKFIPVAEETGLIIPLGQWVLKAACQQLAVWEQEF-SVPLTMSINVSSQQ 623

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            L     + +++L+     +   +KL  +E+V+M +       L +L+ +GISL+LDDFG
Sbjct: 624 FLQPNFVQSVESLMQSHQLAGHHLKLEITETVLMESTHYVTDRLEQLQNLGISLSLDDFG 683

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           T  S L+YL  +P +T+K + S + G  + +  I+++II +A  +E  ++A+ I     +
Sbjct: 684 TGYSSLNYLYNLPINTLKIDRSFVWGIGQGQDQIVKTIIALAHGLEMNVVAEGIETIEQM 743

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + L  +GC+  Q    A PL   +  +++ 
Sbjct: 744 QYLHTLGCELGQGYWFARPLQPEAAQQVIA 773


>gi|256058860|ref|ZP_05449076.1| diguanylate cyclase [Brucella neotomae 5K33]
 gi|261322797|ref|ZP_05961994.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
 gi|261298777|gb|EEY02274.1| diguanylate cyclase/phosphodiesterase [Brucella neotomae 5K33]
          Length = 765

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 151/690 (21%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   +K + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKLKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|225629429|ref|ZP_03787462.1| GGDEF domain protein [Brucella ceti str. Cudo]
 gi|225615925|gb|EEH12974.1| GGDEF domain protein [Brucella ceti str. Cudo]
          Length = 791

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 151/690 (21%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 110 DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 169

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 170 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANRLREF-----LFA 221

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 222 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 281

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 282 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 335

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 336 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 388

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 389 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 448

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 449 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 508

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      I+  EAL 
Sbjct: 509 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIIACEALA 568

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 569 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 623

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 624 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 683

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 684 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 743

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 744 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 773


>gi|148558315|ref|YP_001257893.1| GGDEF domain-containing protein [Brucella ovis ATCC 25840]
 gi|148369600|gb|ABQ62472.1| GGDEF domain protein [Brucella ovis ATCC 25840]
          Length = 765

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLERLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|254710793|ref|ZP_05172604.1| diguanylate cyclase [Brucella pinnipedialis B2/94]
 gi|256029175|ref|ZP_05442789.1| diguanylate cyclase [Brucella pinnipedialis M292/94/1]
 gi|261318361|ref|ZP_05957558.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           B2/94]
 gi|265986161|ref|ZP_06098718.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           M292/94/1]
 gi|261297584|gb|EEY01081.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           B2/94]
 gi|264658358|gb|EEZ28619.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           M292/94/1]
          Length = 765

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANRLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|312876663|ref|ZP_07736644.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796616|gb|EFR12964.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 549

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 213/438 (48%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LT +PNR  F   L   +  +      +  ++ IDID + KIN+ L
Sbjct: 115 KNQEKIKELAYFDQLTNLPNRNYFTMVLEKAIKEA-HFKGQQLALIYIDIDNFSKINNTL 173

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  + +R+ E +     +ARL+G+ FGII+ +  +   +  F   +  S +M
Sbjct: 174 GHETGDIVLKEIAQRLKEAVGNNGFVARLTGDEFGIIIYNFLDFNVLNYFIYKIFNSFSM 233

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              ++E +  +T S+G A + S    S  +LKNA+ A+  AK +G N    + V      
Sbjct: 234 SWEIMEYDFYITPSMGVAIYPSDGQDSVSLLKNADKALKLAKEKGKNTFCFYNVEMDNIL 293

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   +L  A+E  +  L Y PI+ L   ++ G EALI+W HP+ G I    F+ IA
Sbjct: 294 QQRLEFESELRKAIEKDQFVLYYQPIVNLEKMQLCGAEALIRWIHPQKGMIPPMSFIPIA 353

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L +   D+ S R+       ++  N + ++       + +   I   
Sbjct: 354 EQTGLISQIGQWVLTKAILDLKSIREVT-NHNFYVSFNASLREFSSANFVDNVLYTIEAL 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + +  +ESV M +P+ +   L   ++ GI + LDDFGT  S L+YL  +P D V
Sbjct: 413 KADPTSLGIEITESVAMADPQNTIKSLNTFKEKGIKVFLDDFGTGYSSLNYLKQLPIDVV 472

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   +       I +S+I ++  ++  ++A+ I      + L    CD+ Q   
Sbjct: 473 KIDRSFIANMSTDMKEQRIAKSLIDLSHILDLKVVAEGIEDSQQAEILKSFDCDFGQGYL 532

Query: 940 VASPLGFNSILKLLKERF 957
              PL  +  L+ L +RF
Sbjct: 533 FGKPLPKDQFLE-LAKRF 549


>gi|229056323|ref|ZP_04195741.1| Sensory box/GGDEF [Bacillus cereus AH603]
 gi|228720991|gb|EEL72533.1| Sensory box/GGDEF [Bacillus cereus AH603]
          Length = 691

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/576 (21%), Positives = 242/576 (42%), Gaps = 18/576 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
               + + + A       I          +  + D +   D +       P    I G  
Sbjct: 124 FIICITRDITAQVKKKVEIEEKQMLFKSLLEYNNDSIISVDSIGRITYANPATYEIFGYR 183

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +         +I+      F+ I  + +  R  ++  + +    +    ++ +R  P
Sbjct: 184 YEELKDQFI--FQFINKEYEKTFQIIFKNALQGRAKQIVAK-KYIHKEGYELYISVRTIP 240

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   N +I+    +  D+T Q  +       A+ D LTG+ NR S  ++L   L  +   
Sbjct: 241 II-VNSEIVGGYIVTRDVTRQVLNEMKTEYLAYFDQLTGLMNRISCTNKLNEFLAENKE- 298

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ID+D++  IND  G   GD VL  +T  + +L      L R   ++F +++
Sbjct: 299 ----FALVFIDLDEFHLINDTFGHKEGDQVLKKVTECLRDLKIEDMHLFREHDDQFVMLI 354

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +      + + A  + K I+    + E ++ ++ASIG        +    + +  + A+
Sbjct: 355 ENIT-REYVEEVAQIILKKISGHFVIEEEDVYLSASIGIVMAPEDGMDEKMLFQRVDAAL 413

Query: 682 YHAKHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
             AK +G                R  R +I+  L  A+E +E  L Y P I +   +I  
Sbjct: 414 EKAKEKGKGKGYYHFYCSGLDCEREQRFIIENQLHRAIEKNEFSLYYQPQINIETGKIAS 473

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EALI+W++ + G +S ++F+ +AE    I  ++ +++ ++   I  W ++     + I 
Sbjct: 474 MEALIRWENKELGFVSPNQFIPLAERTGFIIKLDEWVVHQVCEQIREWLNK-GYVVVPIA 532

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI++K      L E +   ++K    P  + +  +E  ++ + + S+ +L +L++  + 
Sbjct: 533 VNISAKHFRSITLIEMITRALNKYNVPPHLLAIEVTEGALI-HKDVSKRVLLQLKEQNLK 591

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II +A  +   +IA
Sbjct: 592 IHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIYKDERDTNITAAIIHLAHTLGLNVIA 651

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +     I+ L       +Q      PL    +  
Sbjct: 652 EGVEKAEQIQFLKEKNVKIVQGYFYNRPLSIYDVEN 687


>gi|330965335|gb|EGH65595.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 703

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 207/432 (47%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D+LTG+PNR    DR+   ++    +      +M +D+D +K +ND  
Sbjct: 254 EANHELTHRALHDSLTGLPNRTLLTDRIEQTMNKVRENGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+ + L   D LAR+ G+ F  +L+   +       A+     I  
Sbjct: 313 GHHTGDLLLRHVALRLRQNLHLHDTLARVGGDEFV-LLVELQDQQDALAVAMRQVNEIGN 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFTIGEHQLQISLSIGICMYPGNGTTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++    L Y P    +    VG EAL++W+HP  G +    F+ +A
Sbjct: 432 RNQLQLSQDLRSAIKHKHFCLYYQPKFDALTGLPVGAEALLRWNHPTQGLLGPDLFIALA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L    R +  W  Q   P   I +N+++     N L   +   +++ 
Sbjct: 492 EKTGLIIQIGEWVLNEACRQMREWYTQ-GYPHWRIAVNLSALQFCHNGLVTAVADTLARH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 QLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEI 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   
Sbjct: 611 KIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFL 670

Query: 940 VASPLGFNSILK 951
           +  PL     L+
Sbjct: 671 LGHPLPAQQFLE 682


>gi|170721971|ref|YP_001749659.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169759974|gb|ACA73290.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 695

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 210/440 (47%), Gaps = 9/440 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LTG+PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 255 ANQELTQLALHDTLTGLPNRTLLSDRIEQAIGKVAEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L ++  R+   L   D LAR+ G+ F  +L+         D A+     ++  
Sbjct: 314 HHVGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELQEPADAMDVAVKQVNLVSRA 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ +TAS+G   +  +     E+L+NA+ AMYHAK  G N    F   ++S   
Sbjct: 373 FRVAEHDLQLTASLGIVLYPGNGQDQLELLRNADAAMYHAKSAGKNGYSFFDASMNSNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL +A+E  +  L Y P       + +G EAL++W HP+ G +    F+ +AE
Sbjct: 433 QQLQLLQDLRMALEQRQFRLHYQPKFAAQACQPIGAEALLRWQHPQHGLLLPDRFIGLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L+   R +  W DQ       + +N+++       L + +   +    
Sbjct: 493 KTGLIIPIGEWVLDEACRQMRQWLDQ-GYENWRMAVNLSAIQFCHAGLVDSVARALRDNH 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANCLTLEITETTAMHDADASLAVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +        LTR+GCD +Q   +
Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETGGQQDFLTRLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLK--ERFP 958
             P+     +  L+  ++ P
Sbjct: 672 GQPVPAEQFMGTLQVLQQNP 691


>gi|222149336|ref|YP_002550293.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736320|gb|ACM37283.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 800

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 137/652 (21%), Positives = 256/652 (39%), Gaps = 35/652 (5%)

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
              +I +     +I   + G    V+     +          +  T+RL +         
Sbjct: 146 VFIAIFILSMLVVILAAIVGNRMMVMRPLTQL-------TAAIEATRRLGSRRSVDWHSN 198

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDRVTT 430
             +   +   F  +Q         Q      +   LA      +  +++  D        
Sbjct: 199 DEMGR-LAQSFNAMQ-----SKLQQEEIELKQAHRLATDIYHATPAMLFSVDADDRITGI 252

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF--RVRAA 488
           +    ++ G     + G   ++   I I      R             LQ ++  +   A
Sbjct: 253 SDYWTSVTGYHREDIIG--LSFESLITIE----ARQAYRQVKQNGEAGLQQQYTTKFVCA 306

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D +   +++     +         + +  DIT  K+S       A  D+LTG+ NRQ F 
Sbjct: 307 DGRIMDVLVVESGNATPMAQSNLSLSVMTDITALKQSEARNRRQAMTDHLTGLLNRQGFE 366

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           + L   ++ +          + +D+D++K IND LG   GD  L  L   I  LL    +
Sbjct: 367 NELDVQIEATDRQGG-SLACLFVDLDRFKWINDNLGHHAGDTTLKILVDMIVHLLPENSV 425

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            AR+ G+ F I+L + +        A  +      P  +      ++ASIG A +     
Sbjct: 426 AARIGGDEFAILLRANDCETAARAVANDICGIFETPFIVKGTATRLSASIGIALYPQHAE 485

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
           T++E+L+ A++AMY+ K  G N  + F  S   + R    I++ +  A+ N  L     P
Sbjct: 486 TATELLQKADMAMYNRKRDGKNGFQIFDDSIGNTTRRRAEIEQMIEQALSNDWLDAFLQP 545

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           II L   + VG EAL++  HP  G ++ +E + +AEE   I  I   + ++         
Sbjct: 546 IIDLQSGKTVGYEALMRLRHPVHGIMAPTEIISLAEETGTIHDIGKQVFDKALDHFTRLS 605

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
             +     ++ +N++   + D  L   + + +      PSRI +  +E+ ++ +    + 
Sbjct: 606 ALSGDTTSYLALNVSPTQI-DASLLVWLASAVHLFNIDPSRIIIEITEATLLHDSPHIQT 664

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-------GSTEKRIAIL 899
           +L ++   G  + LDDFGT  S LSYL   P + +K + S +           E+   ++
Sbjct: 665 VLQKIGDFGCRIALDDFGTGYSSLSYLSRFPVNIIKIDQSFIRSMTGDTLDLRERSRMLI 724

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             I  ++  ++ T++A+ I  +   + L  +G DY Q      PL F  +  
Sbjct: 725 EGIAAISHKMKCTVVAEGIETKEQWRALQAIGVDYGQGYLFDRPLSFEDLQA 776


>gi|78486363|ref|YP_392288.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364649|gb|ABB42614.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 665

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 235/435 (54%), Gaps = 5/435 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  DNL+G+ NR    +R+  ++   +        V+ +D+D +K +ND+LG  V
Sbjct: 232 ELYRQARTDNLSGLANRNHLNERINWLISEYSRTGQ-EFAVLFMDLDNFKTVNDMLGHEV 290

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L +++  I E+L+  DI+AR+ G+ F I+L    ++ ++      +   I+    +
Sbjct: 291 GDNLLKNVSTIIQEVLRDYDIIARVGGDEFVIVLNYYQSNFELTHVINRILDRISEVHMV 350

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
               + V+ASIG   +       S ++KNA++AMY AK+ G N  + F           +
Sbjct: 351 DSHPVKVSASIGIVCFPKDGDNISTLMKNADIAMYEAKNSGKNRFKFFTESLHKQVIGEI 410

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++D+  A++N+E  L + P I + D  +VG EAL++W+ PK G +  ++F+  AE+  
Sbjct: 411 QLEQDMQRALKNNEFELYFQPKICVNDGSVVGAEALVRWNDPKKGLVPPNDFIPAAEKTG 470

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           ++  +  ++L+   +  ++W++Q     + I IN++   LLD      +QALI+++   P
Sbjct: 471 LMVPLGHWVLKTAIQQQVTWKEQGLA-DLQISINLSPVQLLDTLFDRKLQALINQSGVDP 529

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +++ +  +ES  M N E++   L  +RK GI+++LDDFGT  S L+YL   P DT+K + 
Sbjct: 530 TKLDIEMTESQFMENTEQNLHSLSTMRKQGINISLDDFGTGYSSLAYLKKFPIDTLKIDK 589

Query: 886 SLMTGSTEKRIAI-LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           + +     +  AI + +I+ +A  +   ++A+ I  E  +  L + GC+  Q  + ++PL
Sbjct: 590 TFIDDYATESGAIFIETIVKIAHTLNLNVVAEGIEQEAQLNYLVQTGCETYQGYYCSAPL 649

Query: 945 GFNSILKLLKERFPL 959
             +     LK R P+
Sbjct: 650 PVSEFEAFLKSRTPV 664


>gi|260167732|ref|ZP_05754543.1| GGDEF domain protein [Brucella sp. F5/99]
 gi|261757168|ref|ZP_06000877.1| diguanylate cyclase/phosphodiesterase [Brucella sp. F5/99]
 gi|261737152|gb|EEY25148.1| diguanylate cyclase/phosphodiesterase [Brucella sp. F5/99]
          Length = 765

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 151/690 (21%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANRLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      I+  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIIACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|83594674|ref|YP_428426.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577588|gb|ABC24139.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Rhodospirillum rubrum
           ATCC 11170]
          Length = 705

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/589 (21%), Positives = 238/589 (40%), Gaps = 33/589 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +       + I    ER  LA+  +   VW+  I  ++   +     ILG    
Sbjct: 121 IGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPPD 180

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPM 502
           +    I   +  IH +D D  R    +    R R R++ EFR++    +  W+    R +
Sbjct: 181 A-ETSIETVMGAIHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLV 239

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           ++    + R +G   DIT+ +   E +   A  D LTG+PNR   + R T     S    
Sbjct: 240 ADDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITR-TQATLASGGAA 298

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++++D+D +K+ ND LG A GD +L  +  R+   L    ++ R+ G+ F +++ 
Sbjct: 299 GGAGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVP 358

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                      A  +   + +P  + +R I ++  IG A       ++ +++ +AELA+ 
Sbjct: 359 GVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHAELALQ 418

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K   G     F         +R  +  +L  A +N E  L Y P IRL D  +VG EA
Sbjct: 419 ETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEA 478

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G +  + F+ + +   +   +  +++ +   D     +  +   I + +N+
Sbjct: 479 LLRWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAGSR--IRMAVNL 536

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            S       +   ++  + ++      ++L  +E V +   E     L  LR +G  +  
Sbjct: 537 FSAQFKAGTVDATVRRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAF 596

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA--- 915
           DD+GT  + LS L   P   +K + + +     + K  AI+R+++ +      ++ A   
Sbjct: 597 DDYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLSVTAEGI 656

Query: 916 ---------KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                                   GCD  Q      P+     ++ L  
Sbjct: 657 EEEEQEKLLLG------------QGCDEGQGYFFGRPMPLADFIQFLAR 693



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 16/112 (14%)

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G    WL  +H  +R+    +    +       +  +R+    + + W + + RP+   +
Sbjct: 56  GGAEAWLNLVHPEEREAVLLLWRRALRE-GEEFEARYRLHRGLSGYRWALGQGRPLRGDD 114

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           G++  +IG   DI +  ++ E  +  +               +RL   LD +
Sbjct: 115 GEVREWIGTVVDIHDHMEA-ERTIALS--------------EERLRLALDSA 151


>gi|163845090|ref|YP_001622745.1| diguanylate cyclase [Brucella suis ATCC 23445]
 gi|163675813|gb|ABY39923.1| diguanylate cyclase (GGDEF) domain [Brucella suis ATCC 23445]
          Length = 765

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|312794366|ref|YP_004027289.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181506|gb|ADQ41676.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 549

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 214/438 (48%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LT +PNR  F+  L   +  +      +  ++ IDID + KIN+ L
Sbjct: 115 KNQEKIKELAYFDQLTNLPNRNHFMLVLEKAIKEA-HFKGQQLALIYIDIDNFSKINNTL 173

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  + +R+ E +     +ARL+G+ FGII+ +  +   +  F   +  S +M
Sbjct: 174 GHETGDVVLKEIAQRLKEAVGNNGFVARLTGDEFGIIIYNFLDFNVLNYFIYKIFNSFSM 233

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              ++E +  +T S+G A + S    S  +LKNA+ A+  AK +G N    + V      
Sbjct: 234 SWEIMEYDFYITPSMGVAIYPSDGQDSVSLLKNADKALKLAKEKGKNTFCFYNVEMDNIL 293

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   DL  A+E  +  L Y PI+ L   ++ G EALI+W HP+ G I    F+ IA
Sbjct: 294 QQRLEFESDLRKAIEKDQFVLYYQPIVNLEKMQLCGAEALIRWIHPQKGMIPPMSFIPIA 353

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L +   D+ S R+       ++  N + ++       + +   I   
Sbjct: 354 EQTGLISQIGQWVLTKAIWDLKSIREVT-NHNFYVSFNASLREFSSANFVDNVLYTIEAL 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + +  +ESV M +P+ +   +   ++ GI + LDDFGT  S L+YL  +P D V
Sbjct: 413 KADPTSLGIEITESVAMADPQNTIKSINTFKEKGIKVFLDDFGTGYSSLNYLKQLPIDVV 472

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   +       I +S+I ++  ++  ++A+ I      + L    CD+ Q   
Sbjct: 473 KIDRSFIANMSTDIKEQRIAKSLIDLSHILDLKVVAEGIEDSQQAEILKSFDCDFGQGYL 532

Query: 940 VASPLGFNSILKLLKERF 957
              PL  +  ++ L +RF
Sbjct: 533 FGKPLPKDQFIE-LAKRF 549


>gi|306837772|ref|ZP_07470637.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
 gi|306407144|gb|EFM63358.1| GAF/GGDEF domain-containing protein [Brucella sp. NF 2653]
          Length = 787

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 106 DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 165

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 166 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 217

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 218 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 277

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 278 VLLRYCVKQGLFPHNDLINIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 331

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 332 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 384

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 385 QVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 444

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 445 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 504

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 505 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 564

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 565 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 619

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 620 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 679

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 680 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 739

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 740 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 769


>gi|288957137|ref|YP_003447478.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase
           [Azospirillum sp. B510]
 gi|288909445|dbj|BAI70934.1| oxygen sensor diguanylate cyclase/c-di-GMP phosphodiesterase
           [Azospirillum sp. B510]
          Length = 750

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 128/449 (28%), Positives = 220/449 (48%), Gaps = 16/449 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  ++   I   A+ D LTG+PNRQ   DR T  L L+        TV+ +DID++K +N
Sbjct: 290 EHDRARAEINRLAYFDTLTGLPNRQLLADRATAALALAGRTRQ-SVTVIFLDIDRFKTVN 348

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG AVGD +LV +T R+  L    D LARL G+ F  +L    ++   +  A  +  +
Sbjct: 349 DSLGHAVGDRLLVEVTARLRPLFIEGDTLARLGGDEFVALLPGC-DAAHASLLAERVLAA 407

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +++P+ + +  +T TASIG A      +    +L+ A+ AMY AK  G N    FR  ++
Sbjct: 408 LSVPMTVADLTLTPTASIGIAVHPDDGLDFDTLLRQADAAMYRAKQAGRNRCHFFRSDIN 467

Query: 699 SFRSDRVMIKEDLCLAVENSE---------LYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
                R+ ++  LC A+E  E           L Y P +RL    +  +EALI+W HP+W
Sbjct: 468 EQAVRRLEMEAALCEALERQETGCAGGESPFELHYQPQVRLRPRCLHRVEALIRWTHPRW 527

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  +EF+ +AEE  +I  ++ ++L+     +  WR      P  + +N+++      +
Sbjct: 528 GAVPPTEFVPLAEECGLIDRLDSWVLKTAVAQLGRWRAAGVPVPG-MAVNVSAVRFARGD 586

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + ++  ++      + + L  +E ++M         L  L  +G++L++DDFGT  S 
Sbjct: 587 LPDQVRTALATNGIPANDLTLEITERLMMTEEGGVHDALDALHALGVTLSIDDFGTGYSS 646

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   P   +K + S +           ++R+II + + +  T++A+ +  E     L
Sbjct: 647 LSYLKRFPVGELKIDRSFVKELDIDAANRPLVRAIIQIGEALGLTVVAEGVEREAQHLML 706

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              GC   Q    A P+   ++++ L   
Sbjct: 707 EAEGCAIGQGYRFARPMPAAALVEWLANE 735


>gi|156933762|ref|YP_001437678.1| RNase II stability modulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156532016|gb|ABU76842.1| hypothetical protein ESA_01588 [Cronobacter sakazakii ATCC BAA-894]
          Length = 664

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/566 (21%), Positives = 250/566 (44%), Gaps = 17/566 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                QG+    +     V  +  ++   D   +            GL    + G    +
Sbjct: 103 ARDLVQGLSFAEQ----VVSEANSVIVILDRHGNIQRFNRLSEEYTGLKEQEVIGQN-VF 157

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++   +    R  +  F        + E  ++    Q  ++       S S  + +  
Sbjct: 158 KLFMTPAEASASRRNITGFFRN-GSSYEVERWIKTRKGQRLFLFRNKFVHSGSGRNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR + LD ++  +       + +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRVLANTDAITGLPNRNAILDMISDAIAK---RGDTQVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L +++  I   L+   +LARL G+ F +++ ++ +   +  
Sbjct: 274 LDNFKKVNDAYGHMFGDQLLQAVSLAILSCLEKDQVLARLGGDEF-LVMATDTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            +  +   +  P  +   E+    S+G A           +++NA+ AMY AK  G    
Sbjct: 333 MSSRIISRLKHPFRIGLIEVYTGCSLGIALAPQHGEDRESVIRNADTAMYTAKENGRGKF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+E ++L + Y P + L +  +  LEAL++W  P+ G
Sbjct: 393 CVFCPEMNQRVFEYLWLDTNLRKALEKNQLVIHYQPKM-LANGVVHSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS  +F+  AEE  +I  +  +++  + R +  WRD      + + +N++++ L D  L
Sbjct: 452 LISPLDFISYAEESGLIVPLGRWVMLDVVRQVAKWRDAGIE--LRVAVNVSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  ++   ++ S I +  +ES ++ N E +  ++     +G  + LDDFGT  S L
Sbjct: 510 ISDLRQALTDMHFTQSPIDVEITESCLIENAELALSVINEFSALGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K + S +          +++ +I+ +AK ++  +IA+ +  E +   L 
Sbjct: 570 SQLARFPLDAIKLDQSFVRDVHKQPVSQSLVHAIVAVAKALDLQVIAEGVESEEEDAFLM 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
           + G D  Q    A P+    +    +
Sbjct: 630 QNGVDQRQGFLFARPMTATELEHWYQ 655


>gi|224367689|ref|YP_002601852.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690405|gb|ACN13688.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 559

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 206/441 (46%), Gaps = 8/441 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+T           +A  D +T +PNR   LDRL   +  +A        +++   D 
Sbjct: 121 LRDLT--VALEYKAAHDATHDIVTDLPNRILLLDRLEQAI-QAARRQKSTLALLIFGFDN 177

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+I+D LG    D +L  +  R+  +L+  D LAR+  + F I+L    N   I +   
Sbjct: 178 FKEIHDTLGHFSSDRLLKQIVSRLQGVLRKSDTLARMGSDEFAILLPMVENKEAIINIIG 237

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVES 694
            ++K+   P ++    + V A IG A +         +L+   +A+  AK       + S
Sbjct: 238 KIQKTFIEPFSIEGLGLEVQACIGIAMFPQHGKDVDTILQRTHVALCAAKQDIKKYTIYS 297

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +       + +  +L  A+EN EL L + P I +    I G+EAL++W HP+ G +  
Sbjct: 298 NGLDKHNPHHLTMVGELRQAIENDELVLHFQPKINIQTRSISGVEALVRWQHPEHGFLPP 357

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AE   +IK +++++L         W  Q     + I IN++    LD EL   +
Sbjct: 358 DDFIPMAERTGLIKPLSIWVLNHALSQGEKWHQQ--NFKLSIAINLSPATFLDPELPNLI 415

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++S     P+ + L  +E  ++ NP+ +  +L RL   GI +++DDFGT  S L YL 
Sbjct: 416 IGMLSLYDIPPNFVTLEITEGSMIKNPDLAMEILERLTSKGIKISIDDFGTGYSSLVYLK 475

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   VK + S +T     +    I++SII +  N+   ++A+ +  +     L  +GC
Sbjct: 476 KMPASEVKIDKSFVTDMLKNDNDAVIVKSIIDLGHNLGLKVVAEGVEDKQTANYLKTLGC 535

Query: 933 DYIQDSHVASPLGFNSILKLL 953
           D +Q  + + PL  +  L  L
Sbjct: 536 DLLQGYYFSKPLSSDDFLNWL 556


>gi|294664580|ref|ZP_06729921.1| PAS PAC, GGDEF and EAL domain signal protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292605637|gb|EFF48947.1| PAS PAC, GGDEF and EAL domain signal protein [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 920

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/617 (21%), Positives = 250/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 303 FELEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 360

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 361 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 418

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  DIT ++++ E 
Sbjct: 419 LRISDGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDITREREANER 476

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +         +++ID+D +K IND  G A G
Sbjct: 477 IELLAHYDRLTGLPNRFLLREQAENAIREANERGQT-LAMLLIDLDGFKSINDSFGHATG 535

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 536 DNLLKLASARLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 595

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 596 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTYHYYSQDVLLRAQRRLE 655

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+E  E  LVY P++  +D+    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 656 LEHALQGALEREEFTLVYQPLVNTVDDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 715

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 716 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPS 774

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ +    R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 775 RLELELTESALIRDSASLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 834

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 835 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 894

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 895 SPRDMAQWLREADAGIR 911



 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 100 RWEIGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+  QK 
Sbjct: 160 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHQKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLRDQ 227



 Score = 65.7 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD   D +  + D    LG+    + G IR+ L  
Sbjct: 220 LEQQLRDQQAQLEEAQRIASMGSWSWDSHHDALWVSQDFLQQLGITHVRLQG-IRDILRL 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 279 LAGPSVAQLRSAWRK-IKHEGMPVHFELEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|264679607|ref|YP_003279514.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262210120|gb|ACY34218.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 868

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 215/439 (48%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S   I   AF D LTG+PNR     +    +  +A +D  +  V+ ID+D++K++N
Sbjct: 418 ERELSRARIRQLAFYDGLTGLPNRSLLQAKADQAIASAAGNDE-QLAVLFIDLDRFKQVN 476

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD++L ++  R+  +L+  DI  RLSG+ F  +L    ++  +A+    +++ 
Sbjct: 477 DSLGHPVGDELLRNVATRLQRVLRSSDIAGRLSGDEFVAVLPQC-DAEHVANTIERLQEL 535

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P+N+ +  ++++AS+G A +         ++  A++AMY AK +G      F     
Sbjct: 536 LAEPLNIADTSLSISASVGIAMFPMDGRDMETLVHRADMAMYQAKSKGRGRFCFFSSEMN 595

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R   +R+ ++  L  A+++  L L Y P I +    + G+EAL +W H + G IS + F+
Sbjct: 596 RLAQERLALETALRKALKSGGLRLHYQPQIEMATGRLYGVEALARWTHAELGEISPARFI 655

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + LE   R +  WR +    P  + +N++     + +L   +   +
Sbjct: 656 PLAEECGLIADLGSWALEEACRQLSQWRAKGMEVPA-VSVNLSPSSFHNLDLPRMIADTL 714

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  + L  +ES+++     +   +  +   G+ L++DDFGT  S LSYL  +P 
Sbjct: 715 DRNDLVPQDLTLELTESILLDTNPSTMKTINEVHAHGVRLSMDDFGTGYSSLSYLRRLPV 774

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +      E   A+  +I+ + K++  T++A+ +        L   G    Q
Sbjct: 775 SELKLDRSFVADLEHDEAARALSSAILGIGKSLHLTVVAEGVETPTQSVMLCEQGYPVAQ 834

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL        L  
Sbjct: 835 GFLFARPLAPKEFEHWLAA 853



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 53/203 (26%), Gaps = 7/203 (3%)

Query: 328 YHGMKGYERAVL---LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
           +   +  + A                 +   +             + V      V+ I  
Sbjct: 62  FCSARLADSARYREIWTHLCAGNAYSGVVERLRSDGSSCWLEATYSPVMDAQGRVMHI-L 120

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +   V       Q       R SL    S   V   D     V        + G  +  
Sbjct: 121 KIATDVTQRRAREQAQQEHLRRLSLVADASDTAVVISDGSSRIVHVNGGFTRMFGWRTEE 180

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G +   +  +     + F     + +   +   + E  V     Q +W  +   P+ +
Sbjct: 181 VAGRMP--IALLAPQASEAFVDHYRAELRAGQPVGREEI-VVGKHGQRYWAKVISNPILD 237

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
           ++G     + +  DIT  K    
Sbjct: 238 ADGRWQYTVSMLTDITRSKMHEA 260



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 5/127 (3%)

Query: 407 QSLAVLGSGD---IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             LA L + D    + ++ +         +   ++G       G          + D   
Sbjct: 13  LQLAQLQALDRVMAMAEFGLDGALHRANDNYLQLMGFTREQSLGRPHRSFCSARLADSAR 72

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           +R I              E R+R +D    W+     P+ ++ G ++  + IA D+T+++
Sbjct: 73  YREIWTHLCAGNAYSGVVE-RLR-SDGSSCWLEATYSPVMDAQGRVMHILKIATDVTQRR 130

Query: 524 KSLEGIL 530
              +   
Sbjct: 131 AREQAQQ 137


>gi|218438991|ref|YP_002377320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218171719|gb|ACK70452.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 589

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 226/454 (49%), Gaps = 17/454 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-----------SATDDNLRPTVMVID 572
           ++ E +      D LT +PN+ S  +   TI+             ++ + +    ++ + 
Sbjct: 135 QTQEQLDYLLHHDPLTSLPNQLSLREIFNTIISQINISLSLSENSNSENPSQFIPILTLG 194

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++++IN+  G  +GD VL    + + + +     LARL+G+ F I+L +  +   +A+
Sbjct: 195 LDRFRRINESFGYNLGDLVLKIAAQYLSQCINNQGSLARLNGDEFAILLKATQDKEIVAN 254

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           +A  + K  + P+ + E+EI ++ SIG + +     T   +L+ A  AM  AK+ GG+  
Sbjct: 255 YAQKLLKLFSQPLLINEQEIFLSLSIGISFYPEDGSTLETLLQKANSAMKRAKYLGGDRY 314

Query: 693 ESFRVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           E +          D + ++ DL  A+E +EL + Y P + L   EIVG EAL +W HP+ 
Sbjct: 315 EFYPKCYQKIPSPDYLELEADLRHALERNELEVHYQPRLSLSSGEIVGAEALTRWYHPRR 374

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S   F+ IAEE  +I+ I  ++L         W+++     I + +N++ +      
Sbjct: 375 GLVSPGIFIPIAEETGLIEPIGEWVLRTACEQSKIWQEKGLGL-IRVAVNLSGRQFNQLN 433

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +  ++ +T  +   ++L  +ES+++ N   S   L  L+ +G+ + +DDFGT  S 
Sbjct: 434 LSQWVAKILRETKINSHLLELELTESILVENASESIQKLNDLKTLGVKIAIDDFGTGYSS 493

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PFD +K +   +    +     AI ++II +A  +  T++A+ I  + ++  L
Sbjct: 494 LSYLQQFPFDILKIDRCFVRNIDQNSKNAAITQAIIFLAHQLGLTVVAEGIETKSELSFL 553

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
               CD +Q    +  +  +    L++ R  L+K
Sbjct: 554 QNHQCDEMQGYLFSRSVKASEFEHLVQSRKNLLK 587


>gi|254254953|ref|ZP_04948270.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158]
 gi|124899598|gb|EAY71441.1| hypothetical protein BDAG_04275 [Burkholderia dolosa AUO158]
          Length = 669

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/570 (21%), Positives = 247/570 (43%), Gaps = 13/570 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
               G  + G+    +     V     +V   D              + G     + G  
Sbjct: 101 ASVAGDLAHGLAFAEQ----VVSEVNSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR- 155

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +  ++   +    R+ +  F    R     E  +   +    +        S S  D 
Sbjct: 156 SAFELFMSPEEGAQSRSNITGFFASNRA-FAVERYINTVNGPRLFQFRNKFVQSGSGVDE 214

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              I    DIT+++ +   +   A  D LTG+PNR +  +R+ T++         +  ++
Sbjct: 215 QFLICSGIDITDERLAERRLTELANTDVLTGLPNRHAISERIQTLISRENDGTRGQVGIL 274

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K++ND  G   GD +L  ++  I   L     LARL G+ F ++         
Sbjct: 275 FLDLDNFKRVNDHYGHITGDRLLQDVSSIIAGCLPSGATLARLGGDEFLVLFEQAT-RAL 333

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + + +  PI+L   E+  + SIG A       +   ++++A+ AMY AK  G 
Sbjct: 334 LEATAQIILERLRTPIHLGLMEVYTSCSIGIAMHPQHGDSLETLIRSADTAMYVAKEAGK 393

Query: 690 NHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    F   ++   +  + +  +L  A+E  +  L Y P++ +   ++ G+EALI+W  P
Sbjct: 394 HTYRVFSLDMNQKVAKYMWLDTNLRKALEEEQFVLHYQPVVDIATGDVHGVEALIRWQSP 453

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G ++  EF+  AEE  +I  +  +++        +   +A    + I +N++++ L D
Sbjct: 454 DRGLVAPVEFIRFAEESGLIAPLGRWVMRT--AAAQAAAWKAKGLGVRIAVNVSARQLQD 511

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +     +++      P  + +  +ES  + +   +R L+ + R++G  + LDDFGT  
Sbjct: 512 TNIVHQFASILDSAGLKPGLLDIELTESSFIEDEHAARGLMKQFRQLGAEIHLDDFGTGY 571

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P D +K + S +TG     +  A++RS++ +A+ +  ++IA+ +    + +
Sbjct: 572 SSLSQLSRLPLDAIKLDRSFITGIDRNSRSQALVRSVVSLARALNFSVIAEGVETRAEAE 631

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L ++  D+ Q  + A P+   +    L E
Sbjct: 632 FLKQIDVDHAQGFYYARPMPAQAFEAWLAE 661


>gi|161521657|ref|YP_001585084.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616]
 gi|189352176|ref|YP_001947803.1| RNase II stability modulator [Burkholderia multivorans ATCC 17616]
 gi|160345707|gb|ABX18792.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
 gi|189336198|dbj|BAG45267.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 667

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 119/545 (21%), Positives = 239/545 (43%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFAS 178

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R     E  +   +    +        S S  +    I    DITE++ + + +   A 
Sbjct: 179 NRA-FSVERYINTVNGPRLFQFRNKFVQSGSGAEEQYLICSGIDITEERNAQQRLTELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+ T++     D   +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 298 VSAIISGCLPSGATLARLGGDEFLVLFEQGT-RALLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   +++NA+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGKHTYRVFSLEMNQRVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + I +N++++ L D  +     +++      P  + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGVRIAVNVSARQLQDMNIVHQFASIVDAAGLKPGLLDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES  + +   +  L+ + R++G  + LDDFGT  S LS L  +P D +K + S +TG  
Sbjct: 535 TESCFIDDEHGAHGLMKQFRQLGAKIHLDDFGTGYSSLSQLSRLPLDAIKLDRSFITGID 594

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +A  +  ++IA+ +    + + L ++   + Q  + A P+  ++  
Sbjct: 595 RNPRSQALVRSVVSLANALNFSVIAEGVETHAEAEFLKQVDVGHAQGYYFARPMPAHAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 AWLAE 659


>gi|126660463|ref|ZP_01731572.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126618276|gb|EAZ89036.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 608

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 225/439 (51%), Gaps = 5/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +++ + +   A  D+LT + NR S ++ L   L+    D+N +  V+ +D D++K IN
Sbjct: 167 QLQEANDRLQKIALYDSLTNLANRNSLIEELQQSLNRIKLDNNHQFAVLFLDCDRFKIIN 226

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VG+ +L  +++ +  ++   + LAR+ G+ F I+L   +   +  + A  +   
Sbjct: 227 DSLGHLVGNLLLKKISQALKTIIGKNETLARIGGDEFAILLSDISGVEQAKELAQNILNL 286

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P     +EI +  SIG             ++++A++AMY AK  G    + F    +
Sbjct: 287 LKKPFYSNSQEIFINVSIGIVLSHPDYQDPENIIRDADMAMYKAKSLGRGQYQIFTPEMY 346

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 ++++ DL  AV+  E  + Y PII L + +I G EALI+W HP+ G IS  EF+
Sbjct: 347 DIAQQLLILQTDLYRAVQQEEFTVYYQPIIDLKENKIAGFEALIRWIHPQKGMISPGEFL 406

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++++     +  W +Q     + I IN++++ L  + L   +  ++
Sbjct: 407 PLAEETGLICEIGSWVMKEACSQLSQWHEQ-GFTDLKICINLSAQQLNQSNLVTEIDGIL 465

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K     + +KL  +ES +M + + +++LLG L + GI L++DDFGT  S LS L   P 
Sbjct: 466 IKNQLQTNSVKLEITESSMMQDLQTTKVLLGELWQRGIKLSIDDFGTGYSSLSQLQNFPV 525

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K +   +           ++  I+ +A+ +   ++A+ I     +++L ++GC + Q
Sbjct: 526 NTLKIDRCFLKNIGGDGENLGLVPVILSIAEVMTMDVVAEGIETSEQLEQLRKLGCHFGQ 585

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL   +  +L+ +
Sbjct: 586 GFFFAKPLDAETATQLIHD 604


>gi|153008711|ref|YP_001369926.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151560599|gb|ABS14097.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 765

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 148/694 (21%), Positives = 288/694 (41%), Gaps = 42/694 (6%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPM-VTASIARITLASIVLYYTYFIIYHGMK 332
             +RW  +      +    + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDRWETRYLIGASAVCLTLGMLCFFSSYVLRDSFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILI-FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
               AV+L+ A  LI  +  + L       +   ++ P  +  + +   L  F     + 
Sbjct: 144 ----AVVLMSACTLIPVLAGLILAGTPFHVIIGLLLIPYFLSNIQMANGLREF-----LF 194

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIR 450
           A     + +     R   A+      +  +D  +           +L +A  + +HG   
Sbjct: 195 AAVMGKRRLSIVAGRFDAALNNMPQGLLMFDSQQRIAVINNKAKAMLQIAEHTKLHGRKL 254

Query: 451 NWL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + L            ND  +    +   +  +R R  ++   +       ++        
Sbjct: 255 DVLLRYCAKKGLFPQNDLKSVHVRMQDLLLGKRTRDIFQLSNQR------YIECIGNQTL 308

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           N        + +  D+T++ ++   I   A  D LTG+PNR  F   + ++   S     
Sbjct: 309 NE-----GAVLMFEDVTQRVEAEARIQHMARYDGLTGLPNRNYFETLVRSM--RSHQQAG 361

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F + + +
Sbjct: 362 TQAALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRFVASRFGGDEFVVFVFN 421

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   +A     +   +    +L   ++ +  S G A     +     M  +A+LA+Y 
Sbjct: 422 LRSEADVAGVMDHIMTVVTGVYDLDGDQVHIDISAGIAIEDIGRCDVGSMHISADLALYE 481

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK         F  +     R    +K DL LA+E+ E+ +VY PI+      +V  EAL
Sbjct: 482 AKSMEDKPWSIFIDAMDTKYRGRQKLKADLRLAIEHGEIKVVYQPIVSAQSLRVVACEAL 541

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W+HP+ G +  +EF+ +AEE+ +I  I  FML +   D +SW D+       + +N++
Sbjct: 542 ARWEHPQLGFVPPAEFIPLAEEMGIITDITRFMLAQACADCLSWGDRIG-----VSVNLS 596

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DL  N++   +   + K+     R+++  +ES ++ +  ++ ++L RL+  GI++ LD
Sbjct: 597 AIDLKSNDIARDIANALQKSGLPAHRLEVEVTESAIISDRNKTSMVLQRLKNAGINIALD 656

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +    VK + S +   T  R +  +LR +  ++  +   +  + + 
Sbjct: 657 DFGTGYSSLSYLNTLQLTKVKVDRSFVRDITTDRRSLMLLRGVTQLSHELGLGVTVEGVE 716

Query: 920 GEIDIKELT-RMGCDYIQDSHVASPLGFNSILKL 952
            E  +  +    G D +Q   +  P+   +I  +
Sbjct: 717 TEEQLALIRVAAGADLVQGYLLGMPVPVEAISAM 750


>gi|300113761|ref|YP_003760336.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299539698|gb|ADJ28015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 817

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 143/791 (18%), Positives = 287/791 (36%), Gaps = 69/791 (8%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           +   +   ++     ++        ELL   A   +  +   +I    Y      + +  
Sbjct: 29  LHVGLAATVAAASLLIAVFWAAAPRELLAGWAIFFMLTTILRVILAHRYARSPDRYRQAS 88

Query: 284 YITFSGIACIAIL----------------FCMSFYYPMVTASIARITLASIVLYYTYFII 327
                 IA   I                 F  + +  +    ++  ++A++ +    F  
Sbjct: 89  KWLMWFIAGTGISGATWGSTIIFLVPDESFVHAGFATLWVCGLSAGSVAALSIIKGAFFA 148

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +  +     + + +     I     G  +     +    ++        L +      ++
Sbjct: 149 F-SLPAMIPSAVYLMTHGGIEATVGGAQLMFLGFISLSAVRMHKSLVQSLTLQFENIRLV 207

Query: 388 QHV------------------------------------LATGYFSQGIFSDGERQSLAV 411
            H+                                    +      Q +F++ ER    +
Sbjct: 208 DHLDTEKKKVERLNEQLEKKVLKRTAELAQSNANLERDIIRRQRAEQALFAEKERLQTTL 267

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDS 470
              GD V   D         P    + G +     G P+      I    R+     +  
Sbjct: 268 HSIGDGVITTDAGGIVEYLNPVAEKLTGWSYNEARGLPLATVFQIIDEQTREPIADPVTQ 327

Query: 471 FVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
            +      R+     V + + Q + +     P+S+  G+IL  + + +DIT+ ++  + I
Sbjct: 328 QLEKTPTTRVTTHKIVISRNGQEYAIQDSAAPISSRKGEILGMVLVFSDITKTRRREQQI 387

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR  F  RL  +L      ++    +   D+D++K IND  G   GD
Sbjct: 388 THQATHDALTGLINRWEFEHRLERVLATLKA-ESTEYALCYFDLDRFKIINDTCGHTAGD 446

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLL 648
           ++L  ++  +   ++  D LARL G+ FG++L    +  +    A A+ K+I        
Sbjct: 447 ELLRQVSEVLEGQIRKRDTLARLGGDEFGVLLEHC-SLQQAQRVATAIHKAIEDFQFTWE 505

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDR 704
            +   +  SIG    T + +  + +LK A+ A Y AK++G N +  +R +          
Sbjct: 506 GKSFRIGVSIGLVPITKASMGIAAVLKAADTACYAAKNKGRNCIHVYRETDKELASHRGE 565

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEFMLIAEE 763
           V     +  A++ +   + + PI+ L  E+     E  ++ +    G +    F+  AE 
Sbjct: 566 VQWMTRIHRALKENYFQVYFQPILPLATEKEEKCYEVFLRLEDGAGGVVLPGAFLPTAER 625

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +   I+ +M+        +W  Q   P     IN++   L +      +   + KT  
Sbjct: 626 YNLAVKIDRWMIANTF----TWLAQNPEPLRTCFINLSGHSLRNKAFLTFIIEQLEKTHI 681

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             ++I    +E+    N   +   +  L+  G   +LD+FG+  S  +YL  +P D +K 
Sbjct: 682 PSAQICFETTETAATANLSCAIRFIKALKAHGCKFSLDNFGSGLSSFAYLKNLPVDFLKI 741

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +G  +         + I+RSI  +   +E   IA+ +  E  +K+L  MG +Y Q   ++
Sbjct: 742 DGLFVKDILDDPIDLTIVRSINEIGHIMEKQTIAERVEKEEVLKKLQEMGINYAQGYWIS 801

Query: 942 SPLGFNSILKL 952
            P     +  L
Sbjct: 802 PPQPLTEMGSL 812


>gi|328543234|ref|YP_004303343.1| Cyclic diguanylate phosphodiesterase domain protein [polymorphum
           gilvum SL003B-26A1]
 gi|326412980|gb|ADZ70043.1| Cyclic diguanylate phosphodiesterase domain protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 753

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 219/447 (48%), Gaps = 12/447 (2%)

Query: 512 YIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +G A   T +  + E   +  A  D+L+G+PNR  F   L+  L        L   V  
Sbjct: 297 VMGYARSATRKLAASEAKAVHAAQHDSLSGLPNRVYFTRMLSRSLADWKEQGGLIAAV-Y 355

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND LG A GD+V+ ++  R+  ++    +LAR+SG+ F +IL    +   I
Sbjct: 356 IDLDHFKDINDTLGHAAGDEVIRAVALRLRGVVPANGMLARISGDEFALILRDCASRKLI 415

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 ++  +  P+ +   E+ V+ S+G A      + S E+L+ A++A+Y AK  G  
Sbjct: 416 ECQLDRIQDELVRPVKVSGTELYVSMSMGAAVAPQDGLGSGELLRKADIALYDAKANGRG 475

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F        R    I  +L  A++ + L + Y P +  +    V +E L++W HP+
Sbjct: 476 RWSFFDPVMEEDVRTRDNIARELRHAIDTNALSVAYQPQVDGITGRYVAVETLVRWAHPE 535

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I+ + F+ IAEE  +I  + L++L R  +D   W      P + I +NI+       
Sbjct: 536 RGPINPASFVPIAEETGLINDLGLWVLRRACQDAHRW------PDVAISVNISPTQFRHP 589

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + + A ++     PSR+++  +ESV  G        + +L+++G+ + LDDFG+  S
Sbjct: 590 RFVDHVIATLAAYDLPPSRLEIEVTESVFAGKDSVILTAMRQLKELGVRIALDDFGSGYS 649

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   PFD +K +   ++     E+  AILR+I+ +   +  T++A+ I      + 
Sbjct: 650 SLSYLRRFPFDILKIDRDFVSNVGECEQARAILRTIVDLGSALGMTVVAEGIETAEQERF 709

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L  +GCD +Q  ++A P     I  ++
Sbjct: 710 LMAIGCDRLQGYYIARPGSGEEIEPII 736


>gi|254504169|ref|ZP_05116320.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222440240|gb|EEE46919.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 685

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 138/501 (27%), Positives = 238/501 (47%), Gaps = 12/501 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D  + +  L+     R  RL    R    D    W  + +RP S++      Y+    
Sbjct: 189 PADILHLKERLER---ERNARLVALVRTSQGD---RWHELTVRPCSDAVTSQPAYLVSEI 242

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE  ++ E     A  D LTG+ NR    +RL+ +L  +AT   L  T+ ++D+D +K
Sbjct: 243 DVTELHETKERAQYLASHDALTGLSNRTYLTERLSKLLADAAT-KGLTATLYLVDLDDFK 301

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND +G A GD +L  +  R+ E+    DI+ARL G+ F I  + +  +     F  ++
Sbjct: 302 AINDTMGHAAGDALLQLVGNRLKEIAGPQDIVARLGGDEFLICHLEDPEAEGPGWFGKSL 361

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
             S +    +     +V+ SIG++ +     +   +++NA+LA+Y AK         F  
Sbjct: 362 LGSFSYQQMIDGHPRSVSLSIGYSHYPEDGRSIDNLIRNADLALYQAKRDPKEKCVRFHD 421

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +   R + + +K+D+  A+E  E  L + PI      E V  EALI+W HP+ G +   
Sbjct: 422 TMRLRRDENLALKKDMERAIEEDEFALYFQPIALTASSETVSAEALIRWLHPEKGLVPPD 481

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE+  +I  I  ++   +A+  + +R +     I I +N++   L D E    M 
Sbjct: 482 QFIPLAEDTGLINRIGAWVCRSVAQAQVRFRKRGFD--ISISMNVSPWQLSDPEFTALMM 539

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L       P++I L  +E+VV+G    +   L  L+ IG S+ +DDFGT  S L+YL  
Sbjct: 540 DLPDLYGCDPTKIILEITENVVLGEIPDALTALNELKIIGYSIVIDDFGTGYSNLAYLYN 599

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P D +K +   +   +    AI++ I+ +A  +  T++A+ +        LT  GCD  
Sbjct: 600 YPIDGIKIDRIFINDIS-NGGAIVKLILSLADALGATVVAEGVETIEQRDWLTENGCDRF 658

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + P+  +  L  L+ +
Sbjct: 659 QGYLYSKPVPEDRFLGFLESQ 679


>gi|311694306|gb|ADP97179.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [marine bacterium HP15]
          Length = 876

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/430 (28%), Positives = 213/430 (49%), Gaps = 13/430 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +      D++T +PNR  F DRL   +  +    N+  +++ +DID+++++ND LG  
Sbjct: 451 HQLEYLTHFDSVTELPNRLLFTDRLQQAILQAEWRKNV-FSILYVDIDRFRQVNDSLGHT 509

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD VL  +  RI   +   D +AR  G+ F ++L    +    ++ A  +   +   I+
Sbjct: 510 VGDYVLCKVAERILACVAEADTVARWGGDEFIVLLPD-RSGADASEIATCINGQLHSVIS 568

Query: 647 LL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSD 703
           L   RE+ V+ S+G A    + I    ++  A  AM   K +GGN    F  S     SD
Sbjct: 569 LENGRELFVSCSMGIAECDGTGIDVDVLINRARTAMATIKEQGGNDYRHFIASDHGTLSD 628

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + ++  L  A+E  +L L Y P I +   ++VGLEAL++W HP  G +    F+ +AE+
Sbjct: 629 ALALETSLRHALEERQLELYYQPQIDIASRQLVGLEALLRWQHPTEGLVPPDHFIPLAEK 688

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L    R   +       P + + +N++++      L   +Q ++ KT  
Sbjct: 689 TGLIIPIGKWVLYEACRQAAAI------PGLRVAVNLSARQFHQENLVTVVQEVLDKTGM 742

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P+ ++L  +ES ++   E +   + +L  +G+S++LDDFGT  S LSYL   P DT+K 
Sbjct: 743 PPAYLELEITESALIYEVEAAIDTMSQLSSLGVSISLDDFGTGYSSLSYLKRFPIDTLKI 802

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    +      I  +II MA ++   +IA+ +  E  +  L    CD  Q   +A
Sbjct: 803 DKSFINEVTTDPGSEVIANTIIAMAHSLNLKVIAEGVETEEQLAMLRERECDQAQGYLIA 862

Query: 942 SPLGFNSILK 951
            P+ F+ ++ 
Sbjct: 863 RPMPFSEVIA 872



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/304 (10%), Positives = 82/304 (26%), Gaps = 20/304 (6%)

Query: 230 GYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG 289
              ++ FG +          +       ++    +L +F         +   +     + 
Sbjct: 3   IGTALCFGLIGAAWMATVLPVRHSTIALQVL---ALTVFTISGSALTGYVFGIQQFELTI 59

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
            + +A+   + F        + R     +    + ++    ++     +++ P   ++  
Sbjct: 60  FSTMALHTSLLFVLCSTAMLLVRPNEGIMASATSPYVGGRSVRKLLPFIIVTP---ILMC 116

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           W     +                   +L++  +G+            +  +  + ER   
Sbjct: 117 WLSLKGLQ-AGYYSEAFGFAISAVSSILVLSFVGWF----------GADALNREEERFRS 165

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTIL 468
            +  S       D             ++       + G    + LP     +   F    
Sbjct: 166 TIDSSPVATVMVDQAGIIQMANQLAHSLFLYPRNHLVGKPLESLLPLRFREEHSVFVRGF 225

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            +    R      E      D+      I + P+    G     +    DITE+ K+ E 
Sbjct: 226 MNAPQQRMMGEGRELFALRHDDSEFPAEIALNPVHTVEGR--YIMASVMDITERLKAEEK 283

Query: 529 ILCN 532
           IL  
Sbjct: 284 ILRL 287


>gi|77163761|ref|YP_342286.1| PAS sensor diguanylate cyclase and phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435136|ref|ZP_05048643.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76882075|gb|ABA56756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus oceani ATCC 19707]
 gi|207088247|gb|EDZ65519.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 591

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 231/575 (40%), Gaps = 12/575 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  V A       + ++ ER  + +   GD V   D         P    + G    +  
Sbjct: 1   MHDVTARNRAEAALVAEKERIQVTLESIGDGVITTDANSRINYLNPTAEAMTGWLLAAAR 60

Query: 447 GPIR-NWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G    + L  I+ + R+     L   +      R      + +     + + I   P+ +
Sbjct: 61  GKALPDVLQIINESTREPVADPLAPCLTGSSAVRSTNPTVLISRHGAEYSIEISAAPIRD 120

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +N  +L  + + +D++EQ++    I   A  D LTG+ NR+ F  RL  +++   T ++ 
Sbjct: 121 ANNQVLGAVLVFHDVSEQRRLQCEIAHQAQHDALTGLVNRREFERRLQRVIETVQTQNSE 180

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K +ND  G A GD +L  L     + ++  D LARL G+ FG++L   
Sbjct: 181 H-ALCYLDLDQFKLVNDTCGHASGDALLQQLAVLFEKNIRRRDTLARLGGDEFGLLLEHC 239

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +    +       +           +   +  SIG    T +  +++ +L+ A+ A Y A
Sbjct: 240 SLDRALQIANTLRQTVEGFRFCWNGQHFRIGVSIGLVPITIANSSAASVLQTADSACYVA 299

Query: 685 KHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI--VGL 738
           K  G N +  +R        R   +     +  A+E +   L   PI+ L       +  
Sbjct: 300 KDGGRNRIHIYREHDVELARRHGEMQWVARIQQALEENRFQLYAQPIVPLKATLSGGIHC 359

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++             FM  AE   +  AI+ +++ +  R + +     +   +   I
Sbjct: 360 ELLLRLVENDGKISPPGAFMPAAERYNLAVAIDRWVVTQALRWLAAHPALLDRITL-CTI 418

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   + D      +      T     +I    +E+  + N   +   +  L+  G   
Sbjct: 419 NLSGHSIGDRFFHAYVLRQFDDTGLPAKKICFEITETAAVANLADATRFMEALKTRGCCF 478

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFG+  S  +YL  +P + +K +G  +         +A++RSI  +   +    IA+
Sbjct: 479 SLDDFGSGLSSFAYLKALPVNFLKIDGLFVKDIVDDPIDLAMVRSINEIGHLLGKKTIAE 538

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            I  +  + +L  +G DY Q   +  P   +++L 
Sbjct: 539 YIENDAILDKLRGLGIDYGQGYGLGQPQPLSALLA 573


>gi|192362232|ref|YP_001982033.1| putative signaling protein [Cellvibrio japonicus Ueda107]
 gi|190688397|gb|ACE86075.1| putative signaling protein [Cellvibrio japonicus Ueda107]
          Length = 732

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 128/573 (22%), Positives = 234/573 (40%), Gaps = 17/573 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +    L                      S   V  +D     V      A++ G      
Sbjct: 156 MASDRLELRRLEISTEQARRPFEEFARNSPTAVIWFDEQGGIVAWNDAAASLYGYELSEG 215

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR---LQYEFRVRAADNQFHWMIIRIRPM 502
            G        +   DR     ++             +    + +  D+    + + +   
Sbjct: 216 TGRPVQ--TLVSEYDRPLVADLIARAAAAGTMDGLAMPKGLKGKRKDSSEFLLGLSLFC- 272

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +G ++ +     D+TE+++  E +   A  D LTG+ NR +   R   +L   A   
Sbjct: 273 WREHGRLI-FNAHVQDLTERRRKEEELHQLANTDILTGLANRANLYRRTEEVLLRPA--- 328

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V++ID+D +K IND LG +VGD +L  +  R+ + +   D +AR+ G+ F ++L 
Sbjct: 329 --PAAVLMIDLDGFKDINDTLGHSVGDSILCEVANRLQQAMGPADTVARIGGDEFAVLLP 386

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             ++  + A+ A A+   +A PI +   E+ + AS G A        +  ++ +A+LA++
Sbjct: 387 DVDHPEQAAELAHALIARLADPIVIDGHEVRIAASCGVAVAPLHAQEALGLIGDADLALF 446

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G   V  F  +             +L  AV   E  L Y P I L D  + G EA
Sbjct: 447 KAKKLGRGQVFVFVTALRMDAVARRLYNIELHRAVSAGEFVLFYQPQINLADGSLAGAEA 506

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G +S + F+   E   +   +  ++L+        WR         + IN+
Sbjct: 507 LIRWQHPERGLLSPAAFLPALEGGPLAAVVGSWVLDEACAQAALWRR-YGAGDFRMGINL 565

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
                  N + + + A +++    P  I+L  +E++V+   +     L  LR +G+ +  
Sbjct: 566 FGAQFRVNNIVDDVAAALARHGLPPQAIELEITENIVLDYDDVVLDALQGLRALGVGIAF 625

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  + LS L   P   +K + S +      E+  +++R+I+ ++++     IA+ I
Sbjct: 626 DDFGTGYASLSLLKQYPLSRIKIDRSFVQNLHESERDTSVVRAILDISRSFGLETIAEGI 685

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +I  K L   GC+  Q      P+      +
Sbjct: 686 EKDIQRKLLRDFGCEEGQGYLFGRPISAMEFAE 718


>gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans]
          Length = 599

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 223/442 (50%), Gaps = 7/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I++ ++     L  A  D LTG+PNR+ F +   T L  +     L   +  +D+DK+K 
Sbjct: 154 ISQLEQEKSRALLQASHDYLTGVPNRRLFYEMAATELARAKRSRKL-YALFFLDLDKFKL 212

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG AVGD +L  + RR+ E L+  D+LARL G+ F I++    +   IA  A  + 
Sbjct: 213 INDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVILVSEMASESDIARVAAKLV 272

Query: 639 KSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +  P  +L   +I V+ SIG A +         +L +A+LAMY AK  G      F  
Sbjct: 273 DVVRDPFLDLGGNDIDVSPSIGIALYPRDGQDVETLLMHADLAMYSAKSAGAATYRFFDT 332

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S   S      +      A+++ E  L Y P + L +  ++GLEALI+W+HP+ G I  +
Sbjct: 333 SLNASSARETELLSRFKRAIKDDEFCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPN 392

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE   +I  +  ++++   R +  WR Q   P + + IN++S+ L D+ L E + 
Sbjct: 393 DFISLAENNDLIVPLGNWVVDAACRQLAVWRGQGL-PIVPVAINVSSRQLKDDTLLETVM 451

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++K   +P  +++  +ES  + + + +  +L +L+K GI + LDD+GT  S L  L  
Sbjct: 452 TTLAKYQIAPEMLEIEVTESCFIEDFDAASQVLEQLQKNGIKIALDDYGTGFSGLKNLKI 511

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +           I+ S I +A N+   ++A+ +  +  +  L   GCD
Sbjct: 512 LPIYAIKIDRSFIRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCD 571

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q  +   P+    I  LL+ 
Sbjct: 572 QVQGFYFQRPVAATEIDTLLQR 593


>gi|89900220|ref|YP_522691.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89344957|gb|ABD69160.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
          Length = 765

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 212/438 (48%), Gaps = 12/438 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   AF D LT +PNR+  +DRL   L  +A        ++ +D+D +K +ND LG 
Sbjct: 323 KAEIEQLAFFDPLTNLPNRRLLMDRLQHALSANARSGRC-GALLFLDLDHFKTLNDTLGH 381

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKS 640
            VGD +L  + +R+   L+  D +ARL G+ F ++L          +         +  S
Sbjct: 382 EVGDLLLQQVAQRLKTCLREQDTVARLGGDEFVVMLEDLAEHSLEAAALARRIGEKILAS 441

Query: 641 IAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +  P  L+ +    T S+G A + ++  IT++++LK A++AMY  K RG N +  F    
Sbjct: 442 LNQPYVLMTQTYRSTCSVGAALFEATTPITAADLLKQADIAMYQVKARGRNDLCFFDPQM 501

Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S      +++DL  A+   E  L Y P  +L +  +VG EALI+W HP  G +   EF
Sbjct: 502 QASITAHAQLEDDLQAALVRGEFALYYQPQYQLQEG-VVGAEALIRWLHPLRGLVPPVEF 560

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I L++L    + +  W+       + + +N++++     +    +  +
Sbjct: 561 IAVAEESELINQIGLWVLRTACQQLARWQGDPRACDLHLAVNVSARQFRQPDFVAQVSTV 620

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + ++   P  +KL  +ES+V+ N   +   +  L+ +G+  ++DDFGT  S LSYL  +P
Sbjct: 621 VHESGIKPHLLKLELTESLVLDNVMDTIAKMNELKDLGVRFSMDDFGTGQSSLSYLTRLP 680

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + S +           I+++II MA+++  ++IA+ +      + L   GC   
Sbjct: 681 LNQLKIDQSFVRNIGLQATDDVIVQTIIGMARSLGLSVIAEGVETPAQQEFLALHGCTLY 740

Query: 936 QDSHVASPLGFNSILKLL 953
           Q      P        LL
Sbjct: 741 QGYLFGKPTALPDFEALL 758


>gi|327191895|gb|EGE58883.1| putative signal-transducer protein [Rhizobium etli CNPAF512]
          Length = 628

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 140/575 (24%), Positives = 251/575 (43%), Gaps = 31/575 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG--------- 443
               SQ          + +      +  +D  +           + GL            
Sbjct: 62  LSALSQAFDGQKRLFEIVLNNLPLGLSVFDADQRLTLYNSRFHQLFGLTPEDIAAGATIT 121

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +   +R     +    R   R    S         + E+++   D +      +     
Sbjct: 122 ELLEKMRGRESAVSPGGRRTGRPA--SAKAGSSRIRRREWQM--NDGRII----QSVVTI 173

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            S+G     I I  DITE +K+ E I   A  D LT +PNR  F ++L   L  +    +
Sbjct: 174 LSDGSN---IAIHADITEDRKAAERITYLAHHDLLTDLPNRIYFREQLDATL--AERKPD 228

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ +++D++K IN+ +G++VGD +L  +  RI       + +ARL  + F I+   
Sbjct: 229 EQIALVHLNLDRFKSINNTIGVSVGDKILQQVAGRIRASAGSENTVARLGSDEFAILQTG 288

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  +R++++ P    E+ + ++ S+G A        +  +LKNA +A+ H
Sbjct: 289 NRQPRSATALADRIRRALSEPFLHGEKRVELSVSMGIAIAPRDGEETDILLKNAGVALLH 348

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F        ++   ++ DL  AVE  E  L Y P+  L  +++ G EAL
Sbjct: 349 AKADGRKRERFFTSEMEAQMQLRHALEADLRAAVEKGEFELHYQPLYDLSKQQVCGFEAL 408

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+HP  G +S  +F+ +AEE+ +I  I  ++L +   D   W +      I + +N++
Sbjct: 409 IRWNHPIRGRVSPMDFIPLAEEVGLIVDIGRWVLRQACSDAAQWPE-----GIKVSVNVS 463

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +     ++L + +   ++     PSR++L  +ESV+M N      +L  L++ GI +++D
Sbjct: 464 AIQFSGSDLMQDVSEALAAAALLPSRLELEITESVLMENLSEVLPILHALKERGIRISMD 523

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   PFD +K + S +    + R   AI+R+II +   +   +  + + 
Sbjct: 524 DFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNREAHAIMRAIILLGDALGMRVTVEGVE 583

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               +  L    CD IQ  H++ P     +  LL 
Sbjct: 584 TAAQLALLECEECDEIQGYHISPPRPVRDVQHLLS 618


>gi|223984659|ref|ZP_03634780.1| hypothetical protein HOLDEFILI_02076 [Holdemania filiformis DSM
           12042]
 gi|223963373|gb|EEF67764.1| hypothetical protein HOLDEFILI_02076 [Holdemania filiformis DSM
           12042]
          Length = 1002

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/623 (19%), Positives = 248/623 (39%), Gaps = 27/623 (4%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
                I +          +  ++D+ +         +L + L      Q  L   +    
Sbjct: 390 FCFGLIFVAAGTQLACGTLLSQVDDAMYTQKR----LLHIQLKESEKAQMQLKEYHGEVS 445

Query: 400 IFSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              D      A+   + D ++  ++  D       +    GL    +      W   +H 
Sbjct: 446 FSYDSAYLYDALVESTDDYIFINNLRDDVFRYPQAMVEEFGLPGQIVRNAAAVWGEKVHP 505

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D+  F       +  R      E+R      ++ W+  R + + + NG  + + G+ ++
Sbjct: 506 DDKAAFLEANQIILDGRATSHNVEYRALNQRGEWVWVRCRGKVVFDENGSPVLFAGMISN 565

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++ +K            D +TG+ N+  + +    ++       +    +M + +D +K 
Sbjct: 566 LS-RKNK---------TDRITGLFNKIVYREETQRLIT---RRPDTPLAIMQLGLDDFKH 612

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND+   + GD+VL    +RI  LL     + RL G+ FGI++        I      ++
Sbjct: 613 INDLYDRSFGDEVLRISAQRIMSLLPENAEVYRLDGDEFGILISGCQ-PEAIRGIYKKLQ 671

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +    +    +    T S G A +     +  E++K A  A+  AK  G N +E F   
Sbjct: 672 TAFDQQMIYEGKRYYCTLSAGCAVYPQDAQSFLELVKAAGYALEQAKLNGKNRLEFFTRQ 731

Query: 699 SFRSDRVMI--KEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +   E +  +++ +    +L+Y P + +   + +G EAL +W    +G +  
Sbjct: 732 ILARKIRSLGIIEKMRESIDQNYAGFFLMYQPQVSVTTGQWIGFEALTRWQKEPYGFVPP 791

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ + EE  MI  +  ++  +       W   A  P + + IN++   L++ +  + M
Sbjct: 792 NEFIPLLEESGMISPVGRWIFRQACAKCAQWSALA--PALTMSINLSYLQLMEPDFIDYM 849

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q  ++ T   P RI +  +ESV+         L  R+  +G+ + +DDFGT  S L  L 
Sbjct: 850 QETLAATQVDPGRIIVEMTESVIASRAHALEHLFQRIHDLGMRIAMDDFGTGYSSLDMLK 909

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D VK + + + G        + ++ I+ +   +   + A+ +  E + + L  M  
Sbjct: 910 KMPADIVKIDRAFVHGVDASNFDESFIQFIVAICHKVNIEVCAEGVETEAEFQILYPMNV 969

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D IQ  +   P+    I + LK 
Sbjct: 970 DTIQGYYFGKPMREEEINQKLKA 992



 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 105/309 (33%), Gaps = 28/309 (9%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           Q+  A         ++       +      +W  D     +      +     L S    
Sbjct: 131 QYTAAYSSSLDNRQNEIRFFHEIMDQMPTHLWIADAQTHEILFMNQAMKEDFQLTSPEGQ 190

Query: 447 GPIRNWLPYIH--------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +     ++                  L    G R+  L      R  D+  HW+   
Sbjct: 191 PCWKVLQRGMNGPCRFCPLPALAAQSDLKLPHTQGERKNTLNQRI-YRNRDSLIHWI--- 246

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                  +G ++ +     D+TE       +  +A  D LT IPNR++ L  L  +L+  
Sbjct: 247 -------DGRLVHFQHAI-DVTE----SHRLRLDADTDELTLIPNRRAGLRTLDELLEQV 294

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                L  T  ++DID+ K +ND  G   GD ++  +++ +  LL+  D+  RLSG+ F 
Sbjct: 295 GQ-GQLSITAAMLDIDQLKAVNDQFGHREGDVLIRQISQTLTRLLRQEDLFFRLSGDEFI 353

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS-SEMLKNA 677
           ++LI+              +  +       ++    +   G     +    +   +L   
Sbjct: 354 LVLIN-QPVSAGTALLNQAQMQLRQWAEAEKKAYRCSFCFGLIFVAAGTQLACGTLLSQV 412

Query: 678 ELAMYHAKH 686
           + AMY  K 
Sbjct: 413 DDAMYTQKR 421


>gi|299132039|ref|ZP_07025234.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
 gi|298592176|gb|EFI52376.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Afipia sp. 1NLS2]
          Length = 777

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 132/571 (23%), Positives = 262/571 (45%), Gaps = 21/571 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIR 450
             G  S+ + S      + +      V    I     V       TIL     ++     
Sbjct: 198 EEGRLSEELASTKRFLEMVLDNIPSAVMVKRIKDGKFVLANRAAETILNRKRDAIINQT- 256

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +  +H      F    D     + G +  E  +   +        R   +++  G+  
Sbjct: 257 --VMEVHPEAAAKFVLQRDDAAIKQGGLVTEEHPIPTDNG-LRLFATRRVTVTDEAGNPQ 313

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             I  ++DIT+++++   +   A+ D LTG+PNR +FL  L  ++D +    N    V+ 
Sbjct: 314 YLIKTSDDITDRRETESRMAHMAYHDGLTGMPNRAAFLQALAQLID-ACDGTNEEFAVLS 372

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D++K++NDV G  +GD +L+ +T+R+ +      ++ARL G+ +G+I+  E      
Sbjct: 373 MDLDRFKEVNDVFGHEIGDKLLIEVTKRLEKAAGAG-VVARLGGDEYGMIIDGEQ-PTAA 430

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRG 688
              A  + + I+    +  + + +  + G + +  +    + +L NA  A+  AK   RG
Sbjct: 431 WKLAETVARMISQEFEIDGKTLRIGVTAGISIFPRNGRDGAALLANAGAALSRAKAKSRG 490

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD----EEIVGLEALIQW 744
                   +     DR  + ++L  A+   EL L Y P+ R       +++ G E L++W
Sbjct: 491 SIVFYEAEMDQQIRDRRALHQELHNALRKGELTLHYQPLARARHTLSGDDVTGFETLVRW 550

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G +  ++F+ +AEE  +I  +  ++L    R+  SW        + I +N++   
Sbjct: 551 VHPTRGFVPPADFIPLAEESGLIVELGEWILREACREAASWPRH-----LQIAVNLSPVQ 605

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            +  +L   + +++ +T  +P R++L  +E V++ + ERS LLL RL+ +G+ + +DDFG
Sbjct: 606 FMHGDLVGLVHSILLETGLTPGRLELEITEGVLIDDFERSLLLLRRLKALGVRIAMDDFG 665

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S L+YL   PFD +K + + +      ++  AI+RS+I +   ++ +I+A+ +  + 
Sbjct: 666 SGYSSLTYLQAFPFDKIKIDRAFVMNLGRNQQSSAIIRSVIGLGHGLDISIVAEGVETQD 725

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  L    CD +Q   +  P         +
Sbjct: 726 QLSFLAVEACDQVQGYFLGKPAPIAQYDAWV 756



 Score = 38.8 bits (89), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 64/214 (29%), Gaps = 25/214 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV-----------L 377
              +      +     + + +    +   +   + +  +     G              L
Sbjct: 3   VWRRIIRTGAIRFSGGLGLVVALSMMTAPVAHAVTDAEVAAGFSGVDQGSLTFQVVVDGL 62

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +VILI   +   V++    ++ I +  E   S A+      +   +  +           
Sbjct: 63  LVILILLAMFVWVMSALRRARRINARREFFVSSALNNLSQGIVITNARQVVTYCNDRYLQ 122

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYE-FRVRAADNQFHW 494
           + GL+   +   +  +       +    R +L   V    R  +  E +     D +   
Sbjct: 123 LYGLSRSDLRKNMTRFELM----ELRKARGMLAEDVETYWRDSMAPEGYMNVLPDGRRI- 177

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              R++  + +NG     +    D TE+ +  E 
Sbjct: 178 ---RMKKETLANG---GIVATHEDCTEEGRLSEE 205


>gi|221210772|ref|ZP_03583752.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD1]
 gi|221169728|gb|EEE02195.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD1]
          Length = 659

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/570 (21%), Positives = 245/570 (42%), Gaps = 13/570 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
               G  + G+    +     V     +V   D              + G     + G  
Sbjct: 91  ASVAGDLAHGLAFAEQ----VVSEVNSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR- 145

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +  ++        R+ +  F    R     E  +   +    +        S S  D 
Sbjct: 146 SAFELFMSPEQGAQSRSNITGFFASNRA-FSVERYINTVNGPRLFQFRNKFVQSGSGADE 204

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              I    DITE++ + + +   A  D LTG+PNR +  +R+ T++     D   +  ++
Sbjct: 205 QYLICSGIDITEERNAQQRLTELANTDVLTGLPNRHAISERIRTVIAQQTGDTPGQVGIL 264

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K++ND  G   GD +L  ++  I   L     LARL G+ F ++         
Sbjct: 265 FLDLDNFKRVNDHYGHITGDRLLQDVSAIINGCLPSGATLARLGGDEFLVLFEQGT-RAL 323

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + + +  PI+L   E+  + SIG A       +   +++NA+ AMY AK  G 
Sbjct: 324 LEATAQIILERLRTPIHLGLMEVYTSCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGK 383

Query: 690 NHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    F   ++   +  + +  +L  A+E  +  L Y P++ +   ++  +EALI+W  P
Sbjct: 384 HTYRVFSLEMNQRVAKYMWLDTNLRKALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSP 443

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G ++  EF+  AEE  +I  +  +++        +   +A    + I +N++++ L D
Sbjct: 444 DRGLVAPVEFIRFAEESGLIAPLGRWVMRT--AAAQAAAWKAKGLGVRIAVNVSARQLQD 501

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +     +++      P  + +  +ES  + +   +  L+ + R++G  + LDDFGT  
Sbjct: 502 MNIVHQFASIVDAAGLKPGLLDIELTESCFIDDEHGAHGLMKQFRQLGAKIHLDDFGTGY 561

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P D +K + S +TG     +  A++RS++ +A  +  ++IA+ +    + +
Sbjct: 562 SSLSQLSRLPLDAIKLDRSFITGIDRNPRSQALVRSVVSLANALNFSVIAEGVETHAEAE 621

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L ++   + Q  + A P+  ++    L E
Sbjct: 622 FLKQIDVGHAQGYYFARPMPAHAFEAWLAE 651


>gi|134095442|ref|YP_001100517.1| diguanylate cyclase/phosphodiesterase [Herminiimonas
           arsenicoxydans]
 gi|133739345|emb|CAL62395.1| Conserved hypothetical protein; putative PAS, GGDEF, EAL domains
           [Herminiimonas arsenicoxydans]
          Length = 897

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 129/605 (21%), Positives = 268/605 (44%), Gaps = 30/605 (4%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--- 427
           L      ++ L     +   +   +  Q   +  E   LA  G  +  +     +DR   
Sbjct: 302 LAIAASGLLFLFSIIAMWMSIRLAWRKQQAKTIQETYRLATEGGNEGFYILLSEQDRKGF 361

Query: 428 ------VTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQ 480
                 V      A+  GL   +        +   H  D  +         +   +G  +
Sbjct: 362 ITDFQVVDCNEKGASFFGLDKENFLATK---VSGYHTGDSLERVMNTYR--LAMEKGFYE 416

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            ++R+   +          R +  +            DI+E K+    +   A +D LT 
Sbjct: 417 DDYRI--PEGSPIKAEWVRRKIVRAEN---GLAITLRDISESKRHEREMSRLATEDGLTC 471

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR   L+ L T L  + ++  L   ++ ID+D +K IND LG + GD +L ++  R+ 
Sbjct: 472 LPNRHWLLNYLPTALATAQSNATL-LAILFIDLDDFKNINDTLGHSAGDQLLCAVAARLK 530

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE----REITVTA 656
            +++  D + R+ G+ F ++L + ++  ++A  A A+ + +  P +L      ++  + A
Sbjct: 531 SVVRASDKVIRIGGDEFTVVLEAIHSEEEVAHIAYAINQVLQEPFDLSRDVTAQKNRIGA 590

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG + +         ++KNA++AMY AK         +    + S ++ +  +++L LA
Sbjct: 591 SIGISMFPRDGGDIETLIKNADIAMYAAKTNCKGQFRFYDRMLYESIKMRLNTEQELLLA 650

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +  L Y P +      ++G+EALI+W HP  G I++ +F+ +AEE  +I AI   +
Sbjct: 651 LKEDQFLLHYQPRVAASSGTLIGMEALIRWQHPTRGLIAAHDFIELAEETGVINAIGAIV 710

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++++  D+ +WR Q     + + +NI++    D ++   +   ++K     + + +  SE
Sbjct: 711 IDKVCADLAAWRAQGIH-AVPVSVNISAHQFHDGKVKNLLAEHLAKHGIPAAMLAIELSE 769

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GST 892
           S +M N       L  + ++GI +++DDFG   S L  L  +    +K + +     G  
Sbjct: 770 SAMMRNAGDIFEELSAISRMGIKMSIDDFGAGYSSLPLLQRLDLHALKIDQAFTAQLGRG 829

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                   + + MA+ +   ++A+ +     ++ L  + CD IQ +++A P+    +  L
Sbjct: 830 PDGATFFTATLAMARALGLRVVAEGVETAEQLQILQTLACDEIQGNYIALPVPAIEVAAL 889

Query: 953 LKERF 957
           ++++ 
Sbjct: 890 IRQQN 894


>gi|262401643|ref|ZP_06078209.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC586]
 gi|262352060|gb|EEZ01190.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC586]
          Length = 685

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 226/471 (47%), Gaps = 11/471 (2%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P  N + ++         + + K+  E  +   A+ D+LTG+ NR   L +++  +  + 
Sbjct: 209 PRLNQDDELSELASTFQSVWKGKELAESKLNQLAYYDSLTGLANRSLLLQKISDAITKAQ 268

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +    +  +D+D++K IND LG  +GD ++ ++  R+        + AR+ G+ F +
Sbjct: 269 -HSHTTGALFYLDLDRFKTINDSLGHTIGDQLIKAVAMRMEAWANHDYLSARIGGDEFAV 327

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++ S     K  + A  +   I+ P  + + ++  T SIG + + S  I++ ++L+ A+ 
Sbjct: 328 LIPSLA-PHKAEEVAKQLLTLISNPYTVDDHQLYCTVSIGISIFPSVGISNIDVLRQADT 386

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+   +L L Y P +      I+G
Sbjct: 387 ALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQHQLELYYQPQVDEQHH-IIG 445

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HPK G +    FM IAEE   I  I  +++E+       W     +P  F  
Sbjct: 446 VEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWLKLGILPAHFRR 505

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+      +   E +   + +   +  RI+L  +ES+++ N E +   + +L++  
Sbjct: 506 LAINISPLQFAQDSFIEQINHALYQAGITGERIELEITESLLLENVESAIQKMAQLKESQ 565

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
           IS+++DDFGT  S L YL ++  D +K + S +    +     AI+ +I+ +A+ +   +
Sbjct: 566 ISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHQDDNDQAIVDAILAIARKLNLEV 625

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERFPLVKNT 963
           IA+ +    ++  L ++GC   Q      PL    I  + +   +  +++ 
Sbjct: 626 IAEGVEDTSELAALKQLGCHQFQGYLFDKPLRAEEITQRFINNSYRKIQSA 676


>gi|188991652|ref|YP_001903662.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733412|emb|CAP51613.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 981

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 132/587 (22%), Positives = 247/587 (42%), Gaps = 10/587 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++     +Q+V         I    E  +           + ++   R+  T +   I 
Sbjct: 392 ALVRVLGQLQNVTEQRQTDALIRWRTELLNRVSALGKIGGCEIEVDTRRMQWTEECYRIH 451

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL   ++   +   L     + RD F   L   V       Q E        Q  W+ + 
Sbjct: 452 GLRKENI--TLEQALSLYTQDSRDAFEAALLRIVDGGLPE-QLELCFYRNSGQRVWVQVL 508

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I       G   RY+ +  D++ ++++ E I   A  D LTG+PNR    ++    +  +
Sbjct: 509 IELDR-REGLPPRYVALFRDVSREREANERIELLAHYDRLTGLPNRFLLREQAENAIREA 567

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                +   +++ID+D +K IND  G A GD++L   + R+ + L+  D+  R S + F 
Sbjct: 568 HERGQV-MAMLLIDLDGFKSINDSFGHATGDNLLKLASSRLHQHLRNSDLFGRFSDDEFI 626

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L   +        A  +  ++  P+      + + ASIG A           +L+ A+
Sbjct: 627 VLLRDLSEPEDAGHVARKLISALGEPLRKDHVTLKLGASIGIALQGEGLSDFDSLLRAAD 686

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N    +          R+ ++  L  A+E  E  LVY P++  + +   
Sbjct: 687 AAMYAAKDSGRNTFHYYSQDVLLRAQRRLELEHALHGALEREEFTLVYQPLVNTVGDTSP 746

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W+ P  G  S +EF+ IAEE   I  +  +++    R  + W          I
Sbjct: 747 AIEALMRWNRPGHGPCSPAEFIPIAEECGEIVRLGEWVIGEACRQAVVWDRAGLHFS-RI 805

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++  L +    E +  +     +SP+R++L  +ES ++ + +  R       + G+
Sbjct: 806 AVNVSAVQLRERGFAERVLEICRDNGWSPARLELELTESALIRDSDSLRRCFELFEQNGV 865

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L YL   P   +K + S + G         + ++I+ +   +   ++
Sbjct: 866 LLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQGMLDDANTAEVTQAIVHLGHALGMQVV 925

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           A+ +    +   L + GCD IQ    + PL    + + L+E    ++
Sbjct: 926 AEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRDMAQWLREAEAGMR 972



 Score =  128 bits (321), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH +D     
Sbjct: 161 RWEIGLDSADHGLWDWDIAADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPDDHAQVS 220

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   S+G  LR +G   D+   K 
Sbjct: 221 AAVQAHLDGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTSDGRPLRMVGTHTDVHHHKL 280

Query: 525 SLEGILCN 532
             + +   
Sbjct: 281 LEQQLREQ 288



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD ++D++  + D    LGLA   +H  +R+ L  
Sbjct: 281 LEQQLREQQAQLEEAQRIASMGSWGWDTLKDQLWVSQDFLQQLGLADLRLH-SVRDILRL 339

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +      + R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 340 LAGPSVAHLRSAWRK-IKHEGMPVHFELEINGRLGVNPHHLRVWAQPVFDGDGALVRVLG 398

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 399 QLQNVTEQRQTDALIRWR------TELLNR 422


>gi|90409982|ref|ZP_01217999.1| hypothetical ScrC (sensory box/GGDEF family protein) (involved in
           swarmer cell regulation) [Photobacterium profundum 3TCK]
 gi|90329335|gb|EAS45592.1| hypothetical ScrC (sensory box/GGDEF family protein) (involved in
           swarmer cell regulation) [Photobacterium profundum 3TCK]
          Length = 776

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 220/454 (48%), Gaps = 10/454 (2%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  +I ++K S E +   A  D LTG+PNR+   +RL   L  +  +      VM ID
Sbjct: 321 VRLTEEIDKRKISEEKLAYQASHDALTGLPNRKYGNERLEQELFRAKRN-KTNVLVMYID 379

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K+IND LG   GD +L   T R+   ++  DILARL G+ F +++    +      
Sbjct: 380 LDNFKQINDTLGHLAGDQILKLSTSRLLGSVRHSDILARLGGDEFLLVIPDLKDLNSAKL 439

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +      P    ++E  V+ SIG + +      + ++L +A+ AMY  K  G N  
Sbjct: 440 LATTIVSLFNKPFFWQKQEFFVSTSIGLSVFPQDGDNAPQLLASADTAMYRVKQDGRNAF 499

Query: 693 ESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +     +  +  ++ D  L  A+ N  L L Y PII L   +IVG EAL++W+  K+G
Sbjct: 500 SFYSTDMNKDVQRTLELDGRLRQAIANDSLELYYQPIIELESNQIVGAEALMRWNDAKFG 559

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
            +S  EF+ +AE+  +I  +    + +       W+      P+ I IN +S      + 
Sbjct: 560 FVSPEEFIPLAEKNGLIHQLGELAINKACMQAAEWQKI---SPLQISINFSSVQFRYCDK 616

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +   ++++     ++ +  +ES+++ + E    LL +L+ +G  LT+DDFGT  S 
Sbjct: 617 LFKQICNGLARSGLPVDKLDIEVTESLLIDHSEEVVTLLHKLQSMGAQLTIDDFGTGYSS 676

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PF+ +K + + +           ++ +II MAK +   ++A+ I  + +   L
Sbjct: 677 LSYLQKFPFNRLKIDRTFLLNMHANDADRELVNAIIAMAKALNLKVVAEGIEEQWNADYL 736

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER-FPLV 960
             + C+Y Q    + P+       LL  +  P++
Sbjct: 737 RFINCEYGQGYLYSKPVPAKEFEHLLSHKLNPVL 770


>gi|157962874|ref|YP_001502908.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157847874|gb|ABV88373.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
          Length = 679

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 214/441 (48%), Gaps = 11/441 (2%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I I  D T+ K         A +D LT +PNR   L+ +   +  + T    R +++ ID
Sbjct: 234 ILIQFDTTQTKL-----RKMATRDPLTELPNRTLLLETIAVTIQRAKTKQR-RFSLLFID 287

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K +ND LG  VGD  L+ + R +   +     +ARL G+ F ++    ++  K  +
Sbjct: 288 LDRFKNVNDSLGHEVGDQFLIRVARNLELTVGQIGTVARLGGDEFVVLADGLDSPTKAVE 347

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +   +  P+ L E  +   ASIG A +    + + +++++A++AMY AK  G N  
Sbjct: 348 LVDKLLVQLNTPMQLNEHTVHPAASIGIAIYPDDGLRAEDLIRHADIAMYSAKAAGSNQW 407

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F+        V +  +  L  A+EN+E  L + P + +    +VG EALI+W      
Sbjct: 408 AFFKPQMTERASVRLRTEASLHDALENNEFILHFQPKLDIETGAVVGCEALIRWQ-KDGR 466

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS + F+ +AEE  MI  I  +++E+  + I  W        + I IN++S+  LD  L
Sbjct: 467 LISPASFIPVAEETGMIIQIGQWVVEQSCKTIKDW-KTRYNFSVPIAINVSSQQFLDASL 525

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++    +   +P  +++  +E+ +M + E + + L +L+  G  + +DDFGT  S L
Sbjct: 526 VPDIKQAALRYQVAPQSLEIEITETSLMNDIESAIIKLQQLKSAGFGIAVDDFGTGYSSL 585

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           SYL  +P  T+K +   ++    +  AI  +I+ + K ++  I+A+ +  E  +  L   
Sbjct: 586 SYLRRLPISTMKIDRGFVSDL-PEESAIASTILMLGKQLDLNIVAEGVENEQQLAWLQNQ 644

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GC   Q  + + PL   S   
Sbjct: 645 GCQIGQGFYFSKPLPIESFEA 665


>gi|306841103|ref|ZP_07473823.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
 gi|306288878|gb|EFM60187.1| GAF/GGDEF domain-containing protein [Brucella sp. BO2]
          Length = 791

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 153/690 (22%), Positives = 286/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 110 DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 169

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 170 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 221

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 222 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 281

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 282 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 335

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 336 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 388

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 389 QVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 448

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S +++     +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 449 HDSSEVSGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 508

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 509 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 568

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLER   D +SW D      I + +N+++
Sbjct: 569 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLERACMDCLSWGD-----KIVVSVNLSA 623

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 624 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 683

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 684 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 743

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 744 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 773


>gi|285018137|ref|YP_003375848.1| c-di-gmp phosphodiesterase or signal transduction protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473355|emb|CBA15860.1| hypothetical c-di-gmp phosphodiesterase or signal transduction
           protein [Xanthomonas albilineans]
          Length = 864

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 219/441 (49%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++ E +   AF D LT +PNR  F  R    L  +         ++ +DID++K++N
Sbjct: 421 EREQTKERVHQLAFYDALTNLPNRVMFSARAEQALADA-EYHGSPVAILFVDIDRFKRVN 479

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G   GD +L  + +R+ E +   D+L+R SG+ F ++L     + + A  A  +  +
Sbjct: 480 ETQGHHAGDGLLRDIAQRLTEEMGVTDLLSRQSGDEFVMMLPQCG-AEQAAGTAERLLLA 538

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P+ +    +  +ASIG A +         +L++A+LAMY AK  GG     F     
Sbjct: 539 LAEPVVVGHVTLHPSASIGVAMFPEDGDDIETLLRHADLAMYRAKDEGGGSFRYFSSDMN 598

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R  +  V ++  L  A+  +EL L Y P         + G+EAL++W+HP  GNIS + F
Sbjct: 599 RMAQERVALETALRDALHQNELQLHYQPQVFSQAPHALYGVEALLRWEHPNLGNISPARF 658

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I+ +  + L    R +  WR +    P  + +N+++ +  + +L   ++ +
Sbjct: 659 VPMAEECGLIEELGQWALREACRQMADWRLRGIPVP-RVAVNLSANNFAEPQLPARVEQM 717

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S        + L  +ESV++ N       L +L+  G+ L+LDDFGT  S LS+L  +P
Sbjct: 718 LSAYGLVADDLALEMTESVMLSNTAAVLDNLRQLQSSGVLLSLDDFGTGYSSLSHLHQLP 777

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + S +     +    A+  S++ + + +    +A+ +  +     L  +GC  +
Sbjct: 778 INELKLDMSFVRDLEHSPTSRALTTSVLRIGETLGMHTVAEGVETDAQRSLLAELGCGVL 837

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    +  L  +++ + L+ +
Sbjct: 838 QGFLFSRALPASALEQWLQAQ 858



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 2/136 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           +      +   +     SLA+  S   +   D     +      + + G  +  + G + 
Sbjct: 131 VRDISAERERDTKMRLLSLALERSDSAIMLCDKDLHILYVNAGFSRVFGYDTKEILGKLP 190

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           + +     +D        +          Q +  V   D+   W+ +   P++  +G + 
Sbjct: 191 SGVLPGPGSDMQVVSQTRERMRAGFG--HQVDLLVYRKDSTPLWITMVANPITEEDGSVQ 248

Query: 511 RYIGIANDITEQKKSL 526
            Y+    DIT  K   
Sbjct: 249 HYMLSFTDITHSKMHE 264



 Score = 41.9 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 22/154 (14%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               IQ  +A+      + +  +R       + D +   D     V       T+  L  
Sbjct: 16  SDATIQTRVASSQELAPL-NSMQR-------TADGIVVIDAQSRIVAFNHIAETLWNLPQ 67

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ--FHWMIIRIR 500
               G  R     I    R +F                 ++R+     +    W+ I   
Sbjct: 68  AQALG--REIGELIDEGIRADFLAS--CLRDGN------DYRLLLQSGKDVQRWISISAS 117

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           P+    G +   +    DI+ +++    +   + 
Sbjct: 118 PVPQEGGPLQ--VLQVRDISAERERDTKMRLLSL 149


>gi|86356799|ref|YP_468691.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280901|gb|ABC89964.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 765

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 130/440 (29%), Positives = 235/440 (53%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+  + I   A  D+LTG+PNR    +RL  ILD +  ++  + TV  ID+D +K +N
Sbjct: 326 ERKRVDDRIHFMAHHDDLTGLPNRAFLKERLAGILDQARRNNR-KVTVAYIDLDNFKDVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D  G A GD+VL  +  R+   ++  D++ RL G+ F ++L+ +++    IA     ++K
Sbjct: 385 DGRGHAAGDEVLKEIATRMANCIRASDMVVRLGGDEFLVVLVHQSSHDAGIARRLRDLQK 444

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  PI+    EI +T+SIG A++     TS E+L NA+ AMY AK  G N ++      
Sbjct: 445 AINRPIHGASGEIAITSSIGVAAFPVDGATSEELLANADRAMYRAKQLGRNTLQHHDGDG 504

Query: 700 FRSDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + + + L  A+   +L+L Y P + +    I G+EAL++W+HP  G +    F+
Sbjct: 505 APLGMPLGEHEELHQAITGDQLFLEYQPQVDVATGRITGIEALVRWNHPAKGRVPPVNFI 564

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L++L    R   +W+D     P+ I +N+++K   D +    +   +
Sbjct: 565 PLAEETGLIVPLGLWVLNEACRQARAWQDMGLA-PVTIAVNVSAKQFADPDFASHVAEAL 623

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +ESVVM + ER+  ++  LR IG+ L++DDFG+  S L+ L   PF
Sbjct: 624 ERHRLQSHWLELEVTESVVMQDAERALAMMESLRAIGVRLSIDDFGSGYSSLAALKTFPF 683

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+      +   AI  ++I +A+ ++ +++A+ +  +  +  L +  C+  Q
Sbjct: 684 DRLKMDRSLVEALPGDKTAVAIASAVISLAQTLKLSVLAEGVETDAQMDFLRQARCEEAQ 743

Query: 937 DSHVASPLGFNSILKLLKER 956
               + P+   +   LL+ +
Sbjct: 744 GYRFSRPVSPEAATLLLQAQ 763



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 4/130 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R    +    D ++  D     V      A  LGL         R++             
Sbjct: 45  RLKAIIHELPDFLYVKDRDSRFVFANAVTAASLGLRRAEEIAGKRDF-DLFDFEAARRHF 103

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMII--RIRPMSNSNGDILRYIGIANDITEQK 523
            I    +   + R+  E  V         +       P+ N  G+I+  IG++ DITE+K
Sbjct: 104 DIEQQIMATGQARIDMEETVVLP-GSPRPVCRLTSKIPLRNERGEIVGLIGVSRDITERK 162

Query: 524 KSLEGILCNA 533
              +     A
Sbjct: 163 LQEDLHRGQA 172


>gi|312885113|ref|ZP_07744798.1| c-di-GMP phosphodiesterase A-related protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367213|gb|EFP94780.1| c-di-GMP phosphodiesterase A-related protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 693

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 136/564 (24%), Positives = 253/564 (44%), Gaps = 21/564 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457
            +    +R S+      + V         ++      +ILG  +   + G   +     +
Sbjct: 135 SLQESEQRLSILSSLISEGVILV-ANECILSVNEQARSILGFDSPHQLLGENLSRFFSGY 193

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D  NF T L+  +  +         V+        +  +   +  S   +   I  + 
Sbjct: 194 QGDETNFSTQLN--LEPKHCYTSSFCGVKRK----VELTGQATTILGSPSKV--VILKSV 245

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           + TEQ  +          D+LT + NR  F  +L   L            ++ +DID +K
Sbjct: 246 NHTEQISAQTKHEDL-HIDSLTKLDNRFVFTKKLEQHLKSL-----TPLVLLYLDIDNFK 299

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG  +GD VL  +  R+  LL     +  L G+ FG+IL +  +       +  +
Sbjct: 300 NINDSLGHHIGDKVLREVALRLKRLLPNETTIGHLGGDEFGVILPNPESKQVTDLLSERI 359

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
              I  P +L      +  SIG     +    +  +L+NA+ AMY AK RG N +  F  
Sbjct: 360 ISVINQPFDLHHFSKRLACSIGSVESPNDGKDARVLLQNADTAMYEAKDRGRNRLIKFND 419

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +++     R+ ++ +L  A++ + L + Y P +      I G EAL++W HP  G IS S
Sbjct: 420 QMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNAQSFSICGAEALVRWKHPVEGYISPS 479

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE+  +I+ +   ++  +   +  W+ Q  + P  + INI+ +   + +L + ++
Sbjct: 480 SFIPVAEKAGLIEQLGRVVMRDVFATVKQWKSQ-GILPGRVAINISPEQFGNRKLIDYLE 538

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+  T   PS I    +ES VM + E +  +L  ++++G  L++DDFGT  S L+YL  
Sbjct: 539 KLLRTTGLDPSSITFELTESAVMSDSEHTLQMLNAIKRLGFWLSIDDFGTGYSSLAYLAR 598

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + + ++G     K+I ++ +II + +++E T++A+ +  +     L+ + C 
Sbjct: 599 FPIDELKIDRAFISGIGTLPKQITVIENIINLGRSLELTVVAEGVENQKQAALLSNLRCH 658

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            IQ  H   P   + + +L  E +
Sbjct: 659 AIQGFHFYRPQPKHEVEELFAENY 682


>gi|70730689|ref|YP_260430.1| response regulator/GGDEF domain/EAL domain-containing protein
           [Pseudomonas fluorescens Pf-5]
 gi|68344988|gb|AAY92594.1| response regulator/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 641

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 235/498 (47%), Gaps = 14/498 (2%)

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
               D  +  ++     E R  A+   + W + +       +            I  +  
Sbjct: 145 LAFGDQLLILKKPFDSLEIRQMASALTWKWQMAQDARQKLDDLQQT--------IERRVA 196

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            L  +      D LTG+P+     DRL   +  +   +  R  VM + +D++K+IN  LG
Sbjct: 197 ELLKVSHLLHYDVLTGLPSSTLLGDRLGQAMARARRYEQ-RLAVMFLGLDRFKRINHALG 255

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD++L  + RR+ + ++  D L R   + F ++L  + +  +I   A  +  +++  
Sbjct: 256 YPAGDELLKRIARRLEQGMRESDSLFRYGSDEFVVVLHDQQHPAQIRALAQKLLATVSQF 315

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702
            ++   ++ VTAS+G + +      +  ++K AE+AM  +K +  G     +  ++    
Sbjct: 316 DDIAGHDLQVTASLGISLYPEDGQDALALIKKAEMAMRTSKEQAPGSYCFFTDDMTHRAR 375

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  ++  +  A+E  E +L Y P I L    +VG EALI+W  P+ G IS   F+ +AE
Sbjct: 376 EQQYLESGILQALERREFHLHYQPKIHLASGNVVGAEALIRWQRPQQGWISPELFIPVAE 435

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I+ ++L    R   +W++    PP+ + IN+++ D    +L + ++  +S   
Sbjct: 436 DSGLITRISQWVLGEATRQCRAWQNAGL-PPVPLSINLSAADFRQPQLLQQLRDALSDNA 494

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+ ++L  +E V++ N E +   L  ++ +G+ L +DDFGT  S LSYL   P D +K
Sbjct: 495 LDPAWLELEITEGVLLQNVEVTLATLLAIKALGVRLAVDDFGTGYSSLSYLRKFPVDVLK 554

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S + G + +     ++ +II + +++   +IA+ +     +  L + GC+  Q  + 
Sbjct: 555 IDQSFIHGLSHEHKDAVLVSAIINLGRSLNLKVIAEGVETHQQLTFLQQQGCEEAQGYYF 614

Query: 941 ASPLGFNSILKLLKERFP 958
           +  L      +LL +  P
Sbjct: 615 SKALPAEDFARLLGKHRP 632


>gi|300692479|ref|YP_003753474.1| integral membrane sensor protein; GGDEF, MHYT and EAL domains
           [Ralstonia solanacearum PSI07]
 gi|299079539|emb|CBJ52217.1| putative integral membrane sensor protein; putative GGDEF, MHYT and
           EAL domains [Ralstonia solanacearum PSI07]
          Length = 701

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 145/679 (21%), Positives = 264/679 (38%), Gaps = 60/679 (8%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                            +   S   P+       +    I +  + F ++   +      
Sbjct: 46  GGACAMGLGIWSMHFVGMLAFSLPIPLGYDPWITLASLLIAMALSAFALWLVCQRRLPWP 105

Query: 339 LLIPAWILIFIWFIG---LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
            L    +L+           MA  +     +  PAL    V+I IL     +        
Sbjct: 106 RLAGGALLMGAGVASVHYTGMAAMRMSPGILYDPALFCLSVVIAILASGAALWIAFRLRR 165

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR----- 450
            S  + +     S+ +  +   +           T    A   G   GS+ G  R     
Sbjct: 166 QSGRVRAMRAGASVVMGLAIVGM---------HYTGMAAA---GFPLGSICGAARGGVSV 213

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            WL  +          +L   +      L+ E R                          
Sbjct: 214 EWLALVI---IVVTLAVLAMALVISVLDLRMEAR-------------------------- 244

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
                A   T   ++ + +   A  DNLT + NR    DRL   +  +  +      +M 
Sbjct: 245 ----TAVLATSLAEANQALAYLALHDNLTKLSNRLLLEDRLEQAIQSAGRNRG-SFALMF 299

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +NDV G   GD +L  + RRI   ++  D +AR+ G+ F  +L   +     
Sbjct: 300 LDLDGFKAVNDVYGHHAGDLLLADVARRIVACVRQQDTVARVGGDEFV-VLAGVSEPADA 358

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  +  ++  P  +   E+ V+ SIG A +        ++L NA+ AMYHAK  G +
Sbjct: 359 GTLADTLLAAVRGPFLVDGHELRVSTSIGIALYPGDGAGQHDLLTNADAAMYHAKGMGRD 418

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  S       ++ + +DL LA+E  EL L Y P     D  +VG+EAL++W HP 
Sbjct: 419 TYCFFEASMNANVHQQLQLVQDLRLALERRELVLHYQPKFSAPDGPVVGVEALVRWQHPA 478

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +    F+ +AE+  +I  +  ++L+   R +  WR +       I +N+++      
Sbjct: 479 RGMLPPDAFIPLAEKTSLIVPLGAWVLDEACRQMAQWRRE-GRTGWSIAVNLSAVQFAHA 537

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + ++  +++    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S
Sbjct: 538 ALVDTVRDTLARHALEPQGLTLEITESTAMRDADASLHILRQLHAMGVRISIDDFGTGYS 597

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P   +K +   +       +  AI+ +++ + + +   I+A+ +  E     
Sbjct: 598 SLLYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAF 657

Query: 927 LTRMGCDYIQDSHVASPLG 945
           LTR+GC  +Q + +  P+ 
Sbjct: 658 LTRLGCHALQGNLLGRPMT 676


>gi|58426778|gb|AAW75815.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 928

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 130/617 (21%), Positives = 249/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 311 FELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 368

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 369 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 426

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  D+T ++++ E 
Sbjct: 427 LRISDGGLPE-QLELCFYRNSGQLIWVQVLIELDR-REGLPPRFVALFRDVTREREANER 484

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K +ND  G A G
Sbjct: 485 IELLAHYDRLTGLPNRFLLREQAENAIREAHERGQV-LAMLLIDLDGFKSVNDSFGYATG 543

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 544 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 603

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
              + + ASIG A           +L+ A+ AM+ AK  G N    +        +  ++
Sbjct: 604 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMHAAKETGRNTFHYYSQDVLLRAQRRLE 663

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               L  A+E  E  LVY P++    +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 664 LGHALQGALEREEFTLVYQPLVNTSGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 723

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 724 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVSVNVSAVQLRERGFAERVLEICRDNGWPPS 782

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 783 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 842

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 843 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 902

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 903 SPRDMAQWLREAETGMR 919



 Score =  124 bits (312), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +       +      +H  D  +  
Sbjct: 108 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPPPNNLTALSGLMHPEDHAHVS 167

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 168 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 227

Query: 525 SLEGILCN 532
             + +   
Sbjct: 228 LEQQLREQ 235



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+    + G        
Sbjct: 228 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMIHLRLQGIRGILRLL 287

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
              +     R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 288 CRPS-VAQLRSAWRK-IKHEGMPVHFELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG 345

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 346 QLQNVTEQRQTDALIRWR------TELLNR 369


>gi|193222246|emb|CAL60852.2| conserved hypothetical protein; putative EAL and GGDEF domains
           [Herminiimonas arsenicoxydans]
          Length = 783

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 223/442 (50%), Gaps = 7/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I++ ++     L  A  D LTG+PNR+ F +   T L  +     L   +  +D+DK+K 
Sbjct: 338 ISQLEQEKSRALLQASHDYLTGVPNRRLFYEMAATELARAKRSRKL-YALFFLDLDKFKL 396

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG AVGD +L  + RR+ E L+  D+LARL G+ F I++    +   IA  A  + 
Sbjct: 397 INDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVILVSEMASESDIARVAAKLV 456

Query: 639 KSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +  P  +L   +I V+ SIG A +         +L +A+LAMY AK  G      F  
Sbjct: 457 DVVRDPFLDLGGNDIDVSPSIGIALYPRDGQDVETLLMHADLAMYSAKSAGAATYRFFDT 516

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S   S      +      A+++ E  L Y P + L +  ++GLEALI+W+HP+ G I  +
Sbjct: 517 SLNASSARETELLSRFKRAIKDDEFCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPN 576

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE   +I  +  ++++   R +  WR Q   P + + IN++S+ L D+ L E + 
Sbjct: 577 DFISLAENNDLIVPLGNWVVDAACRQLAVWRGQGL-PIVPVAINVSSRQLKDDTLLETVM 635

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++K   +P  +++  +ES  + + + +  +L +L+K GI + LDD+GT  S L  L  
Sbjct: 636 TTLAKYQIAPEMLEIEVTESCFIEDFDAASQVLEQLQKNGIKIALDDYGTGFSGLKNLKI 695

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +           I+ S I +A N+   ++A+ +  +  +  L   GCD
Sbjct: 696 LPIYAIKIDRSFIRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCD 755

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q  +   P+    I  LL+ 
Sbjct: 756 QVQGFYFQRPVAATEIDTLLQR 777


>gi|65319824|ref|ZP_00392783.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain [Bacillus
           anthracis str. A2012]
          Length = 443

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 218/433 (50%), Gaps = 7/433 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+  + I   AF D +T I NR  F   L   ++ +         ++ ID++++K IND
Sbjct: 1   MKQQQDKINYLAFHDTVTEIGNRIFFQQELEKSIERAQKTQG-EFGLLYIDLNRFKTIND 59

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G ++GD VL  + +R    L     LAR+ G+ F +++ +     ++ D    + +  
Sbjct: 60  TMGHSIGDSVLKEVAKRFRTCLSPSIPLARIGGDEFAVLVHNHT-EQQLLDLCENLFRIT 118

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SS 699
             P  + +    ++ SIG A +    I ++ +L++A++AMY AK +G N V  +    S 
Sbjct: 119 EKPFVVNQHSFYLSLSIGIAVYPFGGINTTTLLQHADIAMYSAKEKGNNAVCMYDETLSQ 178

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             + R+ +++DL  A+EN+EL+L+Y P +     +++G EALI+W HP+ G IS  EF+ 
Sbjct: 179 KITRRLQLEQDLPNAIENNELFLLYQPQVDSKAGKVIGAEALIRWQHPELGLISPFEFIP 238

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE   I +I  + L+   + +  W        + + IN+++ +       + + ++I 
Sbjct: 239 IAEETSQIISIGKWTLQEACQQLKEWHSA-GYSNLKMGINLSAIEFEQKGFVQTVISIIE 297

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     + I L  +E + M + + +   L  L+  G+ L++DDFGT  S L+YL   P D
Sbjct: 298 EVGVPANSIDLELTERIAMVDEKETLSKLKALKSYGVHLSIDDFGTGYSSLAYLPLYPID 357

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K     +     +     I+++II +A  +   +IA+ +  +  +  L +  C  IQ 
Sbjct: 358 TLKIPREFVNRIGTSNDGDEIIQTIISLAHTLNMKVIAEGVETKEQLTVLQQNACYLIQG 417

Query: 938 SHVASPLGFNSIL 950
            + + P+  + +L
Sbjct: 418 YYYSKPVNEDELL 430


>gi|257092833|ref|YP_003166474.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045357|gb|ACV34545.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Candidatus Accumulibacter phosphatis clade IIA str.
            UW-1]
          Length = 1014

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/569 (22%), Positives = 231/569 (40%), Gaps = 19/569 (3%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR- 450
                  Q +F   ER  + +   GD V   D         P    + G  +    G    
Sbjct: 444  ERKLAEQALFEAKERALVTLHSIGDAVITTDASGHVDYLNPVAEALTGWTTAEARGRSSG 503

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
               P +H   R      +   +   R   L     + A D Q + +     P+   +  +
Sbjct: 504  EVFPIVHDQTRRPVADPVSRCLQQGRIVALASHSLLVARDGQEYDIDDSAAPIRGRDNQL 563

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            L  + +  ++TE ++    +  +A  D LTG+ NR  F  RL   +  +  D   R  + 
Sbjct: 564  LGVVLVFRNVTETRELARQLAHDATHDALTGLINRPEFERRLQRAVTSARQD-GARHVLC 622

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             +D+D++K +ND  G A GD++L  +   +  + +  D LAR+ G+ F ++  +      
Sbjct: 623  YLDLDQFKVVNDTAGHAAGDELLQQINTILAGMFRESDTLARIGGDEFALLQENCPLDRA 682

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             A     +R       N   R   +  SIG    T+    + ++L  A++A Y AK  G 
Sbjct: 683  YAIAQSVVRNVREHRFNWQGRSYQIGVSIGLVPITAETQDTVQLLTEADIACYTAKELGR 742

Query: 690  NHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLM--DEEIVGLEALIQ 743
            N V  ++ +   S +   +      L  A++     L Y PI+ L   D   V  EAL++
Sbjct: 743  NRVHVYQRTDSESVQRHSEILGAAGLRDALDQGLFRLHYQPIVALQGPDFRTVRYEALLR 802

Query: 744  WDHP-----KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
              HP     K   +  + F+  AE   ++ AI+ ++++   R+  +      +    + I
Sbjct: 803  VAHPGNTQRKGELVLPAAFIPAAERYNLMGAIDRWVIQAAFREYAN---GVGLGGARLAI 859

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++   L D  L   +++   +  + P R     +E+  + N   +  L+  L+  G  L
Sbjct: 860  NLSGNSLSDESLLAFIESQFVEHAFPPERACFEITETAAIQNLGPALGLMAALKGHGCHL 919

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             LDDFG+  S   YL  +P D +K +GS +       +  A++ +I  M+  +    +A+
Sbjct: 920  ALDDFGSGLSSFHYLKTLPVDYLKIDGSFVKDMCEDPRDDALVAAINQMSHAMGIQTVAE 979

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             +  E   + L  +G DY Q      P+ 
Sbjct: 980  YVCSESIAERLCELGVDYAQGYFFGKPMP 1008



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 57/175 (32%), Gaps = 3/175 (1%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
                 + ++   + +  L   +  I     F  ++ V    +  + I          + 
Sbjct: 279 AAIFLDSGQVLETLDRTLLDVFVANIAA--CFRNVKLVERLLHAQREIEQQRAFLRAVID 336

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            +   V+  D           +A    L    M G           +     R    + +
Sbjct: 337 ANPHFVFVIDGQGTIRLANRSLAVSFDLTPAQMVGHALPDF-VTDPDLLQTLRDDDRAIL 395

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +R R++ E R         W      P+ N +G++ + IG+ +DI+E+K + +
Sbjct: 396 SGKRRRVEREIRFVDRAGVVRWFHTIKAPIVNGDGEVEQLIGVCSDISERKLAEQ 450


>gi|327540640|gb|EGF27214.1| sensory box/GGDEF family protein [Rhodopirellula baltica WH47]
          Length = 613

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/430 (27%), Positives = 211/430 (49%), Gaps = 11/430 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     +   A  D LTG+ NR  F DRL   L  + +     P V++ID+D++K IND 
Sbjct: 177 RVRTAELERVALHDGLTGLANRIKFNDRLKDSLANANSQP---PAVLLIDLDQFKLINDT 233

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD+++  + +R+  ++    ++ARL G+ F ++L        I   A  ++ S+A
Sbjct: 234 LGHPAGDELIRIVGQRLSAVVGAAGLVARLGGDEFAVVLDHNPTQRTIESIADGIQSSVA 293

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P+ L     +VTASIG          + E+++NA++AMY AK  G +    F   +   
Sbjct: 294 EPVLLDGVPFSVTASIGICGSPDENCDADELIRNADIAMYRAKADGRDCARYFEKGMDQQ 353

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R M++ +L  A+ N E  L + P++    +++   EAL++W+HP+ G +   EF+ +
Sbjct: 354 LRQRQMMEANLRAAIANEEFVLHFQPLLDPNTKQVCSFEALLRWEHPERGLVPPLEFIPL 413

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ I  ++L    ++  +W +      I + +N+++       L + +   I +
Sbjct: 414 AEETGLIRQIGDWVLLEACKEASNWPEH-----IRVAVNVSAIQFRGGTLPKSVSDAIEQ 468

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +  +  R+++  +ESV+MG    +   L  LR  G+ + LDDFGT  S LSYL    FD 
Sbjct: 469 SGIAGERLEIEITESVLMGESLDALDQLHALRAQGVRIALDDFGTGYSSLSYLRRFRFDK 528

Query: 881 VKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +    +    AI+ +I  + K +     A+ I  E  ++ +   G   +Q   
Sbjct: 529 LKMDRSFVQNLNQADAMAIVSTIANLGKCLGMATTAEGIETEQQMRCVMEHGFTEVQGYL 588

Query: 940 VASPLGFNSI 949
              P+    I
Sbjct: 589 YGRPIPSTEI 598


>gi|254720165|ref|ZP_05181976.1| diguanylate cyclase [Brucella sp. 83/13]
 gi|265985172|ref|ZP_06097907.1| diguanylate cyclase/phosphodiesterase [Brucella sp. 83/13]
 gi|264663764|gb|EEZ34025.1| diguanylate cyclase/phosphodiesterase [Brucella sp. 83/13]
          Length = 765

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 285/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLINIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 QVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|77748625|ref|NP_642320.2| hypothetical protein XAC1993 [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 838

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 134/617 (21%), Positives = 251/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 221 FELEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 278

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 279 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 336

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  DIT ++++ E 
Sbjct: 337 LRISDGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDITREREANER 394

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +         +++ID+D +K IND  G A G
Sbjct: 395 IELLAHYDRLTGLPNRFLLREQAENAIREANERGQT-LAMLLIDLDGFKSINDSFGHATG 453

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 454 DNLLKLASARLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 513

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 514 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTYHYYSQDVLLRAQRRLE 573

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A++  E  LVY P++  +D+    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 574 LEHALQGALDREEFTLVYQPLVNTVDDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 633

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 634 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVAVNVSAVQLRERGFAERVLEICRDNGWPPS 692

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 693 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 752

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 753 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 812

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 813 SPRDMAQWLREADAGIR 829



 Score =  127 bits (319), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH  D  +  
Sbjct: 18  RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPEDHAHVS 77

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+  QK 
Sbjct: 78  AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHQKL 137

Query: 525 SLEGILCN 532
             + +   
Sbjct: 138 LEQQLRDQ 145



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD   D +  + D    LG+    + G IR+ L  
Sbjct: 138 LEQQLRDQQAQLEEAQRIASMGSWSWDSHHDALWVSQDFLQQLGMTHVRLQG-IRDILRL 196

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 197 LAGPSVAQLRSAWRK-IKHEGMPVHFELEINGLLGANPHHLRVWAQPVFDGDGSMVRVLG 255

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 256 QLQNVTEQRQTDALIRWR------TELLNR 279


>gi|326318212|ref|YP_004235884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375048|gb|ADX47317.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 872

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/580 (21%), Positives = 241/580 (41%), Gaps = 28/580 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             + A       +     R       S D +W+ D        +     + G       G
Sbjct: 291 AQLQALQASQAELQGSERRFRDMAETSSDWLWEADAQGRLTYLSDRFLQVTGHRRSDWLG 350

Query: 448 PIRNWLPYIHINDRDNFRTILDSFV------GYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                   +           L+              R     R+           +  R 
Sbjct: 351 RPLA--DLLRPEGGQPLHPWLERADGQGPADAEGAARGTLLCRIDDRAGLQRICRVTARA 408

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +    G+   + G A D+T++ ++   +   +  D LTG+PNR+     L T+L+  +  
Sbjct: 409 I----GEGQGFRGTATDLTDEWQAQARVRHLSLHDTLTGLPNRRRLHQFLATLLE--SDG 462

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ +D+D++K IND LG A+GD VL  + RR+  LL   DI ARL G+ F ++L
Sbjct: 463 PAEPLALLCLDLDRFKPINDALGHALGDRVLQEVARRLQALLGPQDIAARLGGDEFVLVL 522

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +   I     A+  ++  P     + + +  SIG         T+ E+L+  ++A+
Sbjct: 523 AGAQDPGDIGRRCAAVVAALCEPFAFDGQTVCIGTSIGVVQAPLHARTAQELLRKGDIAL 582

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    +     +  + R+ +++DL +A+   ++ L Y P   +    +  LE
Sbjct: 583 YDAKAAGRNTWRCYTDALDAQAAARLQMEQDLRMALRTGQMRLHYQPCYAVDGGALRSLE 642

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP  G +   EF+ +A+E  +I+ +  ++L    RD   W        + + +N
Sbjct: 643 ALVRWQHPVRGMLQPEEFLPLAQETGLIRPLGEWVLHTACRDAAGWPS-----GVRVSVN 697

Query: 800 IASKDLLD-----NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           +++           +L   +   + ++     R++L  +E +++ + + +   L  L++ 
Sbjct: 698 LSAGQFGSAGPQAADLPSVVAEALRESGLPARRLELEINEGILLTHGDEALRALAALKQQ 757

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           G+ LTL DF +  S L+ L ++  D +K     +    E+    AI++++  +A  +  +
Sbjct: 758 GVWLTLADFASGYSSLACLRHLLPDGIKIGRGFVAQLPERAQDRAIVQAVGALAHALGVS 817

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + A+ +     +  L R  CD +Q  H +  L    + +L
Sbjct: 818 VRAEGVETRAQLDCLMRQPCDEVQGFHFSDALPPGQLGRL 857


>gi|192361550|ref|YP_001982907.1| MorA [Cellvibrio japonicus Ueda107]
 gi|190687715|gb|ACE85393.1| MorA [Cellvibrio japonicus Ueda107]
          Length = 837

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 134/570 (23%), Positives = 252/570 (44%), Gaps = 17/570 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +   R   A   +   +    +    + +      ++   + S          + H 
Sbjct: 265 ALANSERRFHAAFDYAPLGMALVSLDGQILQSNAAFNQLVMATAQSGDHASWTMESFSHR 324

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            D  + +  L +     R    +E R+     Q     + +  + N++     Y+    D
Sbjct: 325 KDELHEQEYLRALQQDERPVAHFEKRLFNHQGQAIDTQVSVALI-NTDHQQPCYLYQFQD 383

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+E+K+  E +L  A  D LTG+ NR+  L  +  ++  S    +    ++  D+D +K 
Sbjct: 384 ISERKRYEEELLKLAHYDTLTGLGNRRKLLSEMEFLIQKSHRA-SAPFALLFGDLDHFKH 442

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L  + RR+ + L+  D + RL G+ F ++L   N    +   A  + 
Sbjct: 443 INDNLGHEAGDLLLRRIARRLQKGLRRGDNVYRLGGDEFVVLLQDVNRFEAVITVAEKLI 502

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I  PI L    +    S G A + +   T   +L+NA+ A+Y AK +G    + +R  
Sbjct: 503 QLIKRPIRLNNHAVHAGMSFGIALYPTDGDTPQTLLRNADSALYEAKTKGRGSHQLYRKE 562

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +  +R+M+  D+  A+ N E  L Y P++ L +  +  LEALI+W HP  G +S  +
Sbjct: 563 LTDYVHNRLMLDADIRKAIHNQEFELYYQPVVNLNNHHVEYLEALIRWHHPVRGLVSPGD 622

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A+E  +I  I  +++  + R    W  +     + I INI+++    + L + +Q 
Sbjct: 623 FIPYAQENGLINRIGEWVINDVCRQAEDWHTKGIT--LPIAINISARQFNQHNLGQLIQH 680

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++      ++ L  +E + M N + +   +  L+ +G+ ++LDDFG   S LSY+   
Sbjct: 681 ALAEHHLQGQQLILEITEQLFMENAQDNIRQIEELKAMGLRISLDDFGVGYSSLSYVMRF 740

Query: 877 PFDTVKFNGSLMTGSTEKR-----------IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
               +K + +L+    + +             +L++II + K I  TIIA+ +  E    
Sbjct: 741 APHYLKIDRALIEQIDQAKVPQDTSEYKQQQRMLQAIIDLQKIIPMTIIAEGLETEAQQH 800

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L   GC   Q    + PL    +  LL++
Sbjct: 801 FLIECGCGMAQGYLYSHPLPARDVPGLLQQ 830



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 12/164 (7%)

Query: 382 IGFTVIQHVLA--TGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +    +Q  +     +  +   +  +RQ       G   ++W                  
Sbjct: 118 LHAAQLQRAMECGLAWAEEEHHASEQRQRFIELTEGLPHLIWTCLPDGRCDFLNQRWCEY 177

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G +     G    WL  +H  DR          V      L  +FR+   D ++ W   
Sbjct: 178 TGQSQEQQLG--YGWLEQVHPEDRAPLLKAWADCV-NSGTPLSIKFRIGRYDGEYRWFDT 234

Query: 498 RIRPMSNSNGDILRYIGIANDITE-----QKKSLEGILCNAFQD 536
           R  P+ +  G+++R++G   DI +        +      +A  D
Sbjct: 235 RATPLLDDKGNLIRWLGSNTDINDVETMRLALANSERRFHAAFD 278


>gi|157145625|ref|YP_001452944.1| RNase II stability modulator [Citrobacter koseri ATCC BAA-895]
 gi|157082830|gb|ABV12508.1| hypothetical protein CKO_01371 [Citrobacter koseri ATCC BAA-895]
          Length = 691

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/554 (21%), Positives = 247/554 (44%), Gaps = 13/554 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +   +   D   +            GL    + G    +  ++   +    R  
Sbjct: 142 EQVVSEANSAIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQ-SVFKLFMSRREAAASRRN 200

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +  F        + E  V+    Q  ++       S S  + +  I    DITE++++ E
Sbjct: 201 ISGFFRNGN-SYEIERWVKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRTQE 259

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  + +   ++ +  +      ++ +D+D +K++ND  G   
Sbjct: 260 RLRVLANTDTITGLPNRNAIHELINDAIENAGDNQ---VGIVYLDLDNFKRVNDAYGHMF 316

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L +++  I   L+   +LARL G+ F I+L ++ +   +   A  +   +  P  +
Sbjct: 317 GDQLLQAVSLAILSCLEENQLLARLGGDEF-IVLATQTSQGSLEAMASRILTRLRQPFRI 375

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705
              E+    SIG A        S  +++NA+ AMY AK  G      F   ++    + +
Sbjct: 376 GLIEVYTGCSIGIALAPQHGHDSESVIRNADTAMYTAKEGGRGQFCVFSPEMNQRVFEYL 435

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L  A+EN +L + Y P +     E+  LEAL++W  P+ G I   EF+  AEE  
Sbjct: 436 WLDTNLRKALENDQLLIHYQPKMTWR-GEVRSLEALVRWQSPERGLIPPLEFISYAEESG 494

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  +++  + R +  WR +     + + +N++++ L D  +   ++ ++ +  +  
Sbjct: 495 LIVPLGRWVMMDVVRQVAKWRSKGIN--LRVAVNVSARQLADQTIFTDLKQVLHELNFEY 552

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S LS L   P D VK + 
Sbjct: 553 CPIDVELTESCLIENEELALTVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQ 612

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P
Sbjct: 613 TFVRDIHKRSVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGFLFAKP 672

Query: 944 LGFNSILKLLKERF 957
           +   +  +  K   
Sbjct: 673 MPAAAFERWYKRYL 686


>gi|217969775|ref|YP_002355009.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507102|gb|ACK54113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 771

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 139/667 (20%), Positives = 261/667 (39%), Gaps = 16/667 (2%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
           +      V   +  ITLA ++          G        L +          + +    
Sbjct: 92  IWLGGSGVFIGVTTITLAVLLGLAFRLGAARGWLRPAPLQLFLFGVFTHATSLLLIATVP 151

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF-SQGIFSDGERQSLAVLGSGDI 417
            + L        L   L++    +    +   L       + + +   R         D+
Sbjct: 152 NQSLAGLFANLGLPYLLLMGAATLLLGALLRDLEQRRATERALAASEARLRAITAAIPDL 211

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  D     +        +L      + G        +        R  L+  +     
Sbjct: 212 VFVVDEDGRYLEVITRQENLLAAPPEQVIGRRSE--DVLPAGPAAVLREALEQALTSP-E 268

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
           R    + +             I+ +    G       +  DIT    + E I   A+ D 
Sbjct: 269 RTCARYALDTPAGH-REFQAWIQAIDAPIGGRRAAAILVQDITPNVAAEERIRKLAYYDP 327

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PNR+  ++RL   +  +A    L   +M ID+D +K IND+LG   GD +L     
Sbjct: 328 LTTLPNRRLLVERLGHAIATNART-GLHGALMFIDLDDFKDINDLLGHHNGDVLLREAGA 386

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREI 652
           R+  +++  D +AR  G+ F ++L     S           A  + + +  P  L   + 
Sbjct: 387 RLRGVVRESDTVARFGGDEFVVLLELLAESADEALLAARQVADKLLEQLGHPYRLDGLDR 446

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
             TAS+G   +   + T+ E+++ A+L+MY AK  G N    F         DR+ ++ +
Sbjct: 447 KCTASLGLVIFNGHEHTADELMQRADLSMYEAKRSGKNTARVFDPHMRTELADRLALETE 506

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ +    L   P +      ++G EAL++W+    G    + F+ IAE+  ++ A+
Sbjct: 507 LRGAIGSGAFLLHLQPQLD-AGGRLIGAEALLRWNREGHGPTPPALFIPIAEQAGLMPAL 565

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
               +     ++  W        + + +N+++  L +    E + AL+++T     R+KL
Sbjct: 566 GREAMALACEELARWVALPGADGLVMAVNVSAAQLYEPGFVEEVLALLARTGAPAERLKL 625

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+++ + ER+   + RLR++GI  ++DDFGT  S L YL  +P D +K + + +  
Sbjct: 626 ELTESLLLTDIERAIEAMTRLREMGIRFSIDDFGTGYSSLGYLQRLPLDELKIDRTFVRD 685

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                  +AI+R+I+ +A  +   ++A+ +        L   GCD  Q    A P    S
Sbjct: 686 LPANASSLAIVRTIMALADTLRIRVVAEGVETSAQHACLLDNGCDAFQGFLFARPEAVES 745

Query: 949 ILKLLKE 955
               +  
Sbjct: 746 FRARMSA 752


>gi|152988979|ref|YP_001348933.1| hypothetical protein PSPA7_3579 [Pseudomonas aeruginosa PA7]
 gi|150964137|gb|ABR86162.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 685

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/432 (28%), Positives = 220/432 (50%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   ++  A  DNLT +PNR    DRL   +  +  DD  R  V+ +D+D +K +ND  
Sbjct: 254 RANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDR-RFAVLFMDLDGFKAVNDAY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  RI   ++  D +ARL G+ F +++         A  A  + K I+ 
Sbjct: 313 GHHLGDLLLIEVAERIRGNVRAQDTIARLGGDEFVLLIE-AREPADAATLAEKLVKQISQ 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ V+ASIG A +     T  E++ NA+ AMYHAK +G N    F   +++  
Sbjct: 372 PYQISRHEVRVSASIGIALFPGDGQTRHELMINADAAMYHAKDQGRNGYCFFESSMNANA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ +  DL  A+E  +L L Y P +      ++G+EAL++W HP  G I+  +F+ +A
Sbjct: 432 QEQLQLLHDLRQALERQQLVLHYQPKVLAPSGPMIGVEALLRWQHPLHGLITPDQFLPLA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L    R +  W D        I +N+++       L + ++  + + 
Sbjct: 492 EKTGLIVQIGEWVLGEACRQMRLWLDA-GHSDWSIAVNLSALQFAHAGLLDAVRDALQQH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + L  +ES  M + + S ++L RL  +G+ +++DDFGT  S L YL  +P + +
Sbjct: 551 ALEPAHLILEVTESTAMRDADASLVILERLSAMGVGISIDDFGTGYSSLLYLKRLPANEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +  E   + LTR+GC+ +Q   
Sbjct: 611 KIDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQKEFLTRLGCNSLQGFL 670

Query: 940 VASPLGFNSILK 951
           +  P+    +L 
Sbjct: 671 LGRPMPAEQLLA 682


>gi|213967018|ref|ZP_03395168.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385203|ref|ZP_07233621.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062771|ref|ZP_07254312.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|213928340|gb|EEB61885.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 705

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 208/438 (47%), Gaps = 9/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D+LTG+PNR    DR+   ++    +      +M +D+D +K +ND  
Sbjct: 254 EANHELTHRALHDSLTGLPNRTLLTDRIEQTMNKVRENGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGE--LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G   GD +L  +  R+ +   L   D LAR+ G+ F  +L+   +       A      I
Sbjct: 313 GHHTGDLLLRQVALRLRQNLHLHLHDTLARVGGDEFV-LLVELQDQQDALAVATRQVNEI 371

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
             P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S
Sbjct: 372 GNPFTIGEHQLQISLSIGICMYPGNGTTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNS 431

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +++ + +DL  A+++    L Y P    +    VG EAL++W+HP  G +    F+ 
Sbjct: 432 NARNQLQLSQDLRSAIKHKHFCLYYQPKFDALTGVPVGAEALLRWNHPTQGLLGPDLFIA 491

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  ++L    R +  W  Q   P   I +N+++     + L   +   ++
Sbjct: 492 LAEKTGLIIQIGEWVLNEACRQMREWYTQ-GYPHWRIAVNLSALQFCHSGLVTAVADTLA 550

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P +
Sbjct: 551 RHQLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPAN 610

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q 
Sbjct: 611 EIKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQG 670

Query: 938 SHVASPLGFNSILKLLKE 955
             +  PL     L+ ++ 
Sbjct: 671 FLLGHPLPAQQFLENIRA 688


>gi|77165487|ref|YP_344012.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434956|ref|ZP_05048464.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883801|gb|ABA58482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus oceani ATCC 19707]
 gi|207091289|gb|EDZ68560.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 811

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 144/805 (17%), Positives = 292/805 (36%), Gaps = 48/805 (5%)

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
                   LY    +G A+ +   L +  +    +        A+       +  G   +
Sbjct: 12  FRAKQVEILYEQSHVGQAASIVAALILIAVFWTVTPHRTLAGWAFFFTLVTVLRVGLAHR 71

Query: 242 LV--NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                  S ++  W A     +  S   +    +      + V     +   C      +
Sbjct: 72  YARSPDHSKQVGEWLAWFMTGIGISGATWGSAVIFLVPNGSLVHTGFAALWICGLSAGAI 131

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + +  +  A  A    A +        +Y  + G  +   +  A ++   +     + + 
Sbjct: 132 ATFSIIKGAFFAFSLPALLPSA-----LYLIISGDMKEATVGGAQLMFLGFISLSAVRMH 186

Query: 360 KRLDNDIIQPALVGGLV-------------------------LIVILIGFTVIQHVLATG 394
           K L   +        LV                           +      + + ++   
Sbjct: 187 KTLVQSLTLQFENARLVDHLDTEKKKVEKLNEQLEKKVLKRTAELAQANANLQRDIIKRQ 246

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q +F++ E   + +   GD V   +         P    + G +     G P+    
Sbjct: 247 RAEQALFAEKELLQITLHSIGDGVITTNAEGIVEYLNPVAEKLTGWSCDKARGLPLATVF 306

Query: 454 PYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             I    R+     +   +       +     V + + Q + +     P+S+  G++L  
Sbjct: 307 RVIDEQTREPIADPIAQCLKEGGAIEIANHSVVISRNGQEYAIQDSAAPISSRTGEVLGV 366

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +D+TE +     I   A  D+LTG+ NR+ F  RL  +L      ++    +   D
Sbjct: 367 VLVFSDVTEARHMTRQITHQATHDSLTGLVNRREFEHRLERVLATLKA-ESAEYALCYFD 425

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K IND  G   GD++L  ++  +   ++  D LARL G+ FG++L    +  +   
Sbjct: 426 LDRFKVINDTCGHVAGDELLRQVSEVLRGQIRKRDTLARLGGDEFGVLLEHC-SLKQAQR 484

Query: 633 FAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            A A+ K+I         +   +  SIG    T + +  + +LK A+ A Y AK++G N 
Sbjct: 485 VATAIHKAIEDFQFTWEGKSFRIGVSIGLVPITKASMGIAVVLKAADTACYAAKNKGRNR 544

Query: 692 VESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDH 746
           +  +  +          V     +  A++ +   + + PII L  E+     E  ++ + 
Sbjct: 545 IHVYHETDKELASHRGEVQWMTRIHRALKENYFQVYFQPIIPLATEKEEKCYEVFLRLED 604

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
              G +    F+  AE   +   I+ +M+        +W  Q   P     IN++   L 
Sbjct: 605 GAGGVVLPGAFLPTAERYNLAVKIDRWMIANTF----TWLAQNPEPLRTCFINLSGHSLR 660

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +      +   + KT     +I    +E+    N   +   +  L+  G   +LDDFG+ 
Sbjct: 661 NKTFLAFIIEQLEKTPIPSIQICFEITEAAATANLSCTIRFIKSLKSHGCKFSLDDFGSS 720

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S  +YL  +P D +K +G  +         +AI+RSI  + + ++   IA+ +  E  +
Sbjct: 721 LSSFAYLKNLPVDFLKIDGLFVKDILDDPIDLAIVRSINEIGQIMKKQTIAEWVEKEEVL 780

Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949
           ++L  +G +Y Q   +  P     +
Sbjct: 781 EKLREIGVNYAQGYWINPPQPLTEM 805


>gi|75676900|ref|YP_319321.1| diguanylate cyclase/phophodiesterase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421770|gb|ABA05969.1| diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi
           Nb-255]
          Length = 778

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 137/697 (19%), Positives = 279/697 (40%), Gaps = 43/697 (6%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
              RW A+           +     ++        +         +   T ++     + 
Sbjct: 92  EAGRWEARYQIGAVLYATALGAWCAIALLMTDDAVAHM-----ICISVTTGYVAAGAGRA 146

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           Y    +     + I +    +  A+  R D      AL+  L  + +    T +Q +   
Sbjct: 147 YGLPWIF---HLQILLTCGPMAGAMALRGDPYYFGMALLTVLYFLGLERITTRLQQIFLR 203

Query: 394 GYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              ++   +    +   A+      +  +               ++ L +          
Sbjct: 204 ALIAREREAALAGQFDTALNNMPHGLCMFGADGRLGVMNYRFNEMMHL-ADDFVHRGVGA 262

Query: 453 LPYI---------HINDRDNFRTILDSFVGYRRGRLQYEF-RVRAADNQFHWMIIRIRPM 502
           +  I            +     + +++           +  R RA       +    +PM
Sbjct: 263 VDVIAACVTAGTMSPENGRAIVSEIENSQAGAIVTADVDLERGRA-------LSWTFQPM 315

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +         + +  DITE++K+   I   A  D+LT +PNR SF D +  +L     + 
Sbjct: 316 AGG-----GTVILVEDITERRKAEAKINHLARFDSLTELPNRLSFRDEIERLLASLNGES 370

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            L   ++ ID+D++K+IND LG   GD +L  +  R+  +L+  D +AR  G+ F +   
Sbjct: 371 RLS-ALLFIDLDQFKQINDTLGHPCGDRLLCMVADRLRGMLRPEDFVARFGGDEFVVFQQ 429

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +  + +  A  + + +A    +    + + ASIG A  +   IT+  +LK+A++A+Y
Sbjct: 430 NIRSPEEASALARRIVERLAERYEVDRHLVEIGASIGIALTSP-GITADNLLKHADMALY 488

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G      FR     +      ++ DL  A+   E  L Y P++ L    I   EA
Sbjct: 489 RAKADGRGTFCFFRGEMAETVESRRVLELDLRKALAREEFELFYQPLVHLKSGRITTCEA 548

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP  G +S  + + +AEE+ +I  +  ++L +   + + W +      + + +N 
Sbjct: 549 LLRWNHPTRGMVSPMDIIPVAEEMGLILDLGRWILRKACMECMRWPEA-----VSVAVNF 603

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +S+     ++   ++  +  +     R+++  +ES ++ N E +   L +L   G+ ++L
Sbjct: 604 SSQQFHQRDILSEVRYALEVSGLPAHRLEIEITESSLLRNTEWTHDALRQLHSAGVKISL 663

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI-LRSIIPMAKNIETTIIAKDIY 919
           DDFGT  S LSYL   P   VK + S + G    R  + LR +  ++ ++   ++ + I 
Sbjct: 664 DDFGTGYSSLSYLHNFPLQKVKIDRSFLEGIDTDRPLMLLRGVARLSADLGMAVVVEGIE 723

Query: 920 GEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKE 955
               ++ ++  G     Q    + P+    I +LL  
Sbjct: 724 TTEQLELVSLDGTVTEAQGYLFSRPVSGVRIRELLDA 760


>gi|119471260|ref|ZP_01613763.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Alteromonadales bacterium
           TW-7]
 gi|119445726|gb|EAW27009.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Alteromonadales bacterium
           TW-7]
          Length = 630

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 145/576 (25%), Positives = 263/576 (45%), Gaps = 23/576 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +       Q +       +      G+ V   D+  + V+                +  
Sbjct: 64  QLNELSDTQQQLEHSISVLNATFDAIGEQVTVLDLKGNVVSANIMAREFF----ERFNLD 119

Query: 449 IRNWLPYIHINDR-----DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             N+   I   D+     +    I+       +  L  EF     D  +     R  P  
Sbjct: 120 AYNYFSQI---DKVIKKGNKSADIIAQLKADSKQALSGEFESID-DKHY---SYRSLPQL 172

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             NG ++  +    DI+ +K+  E I   A+ D LTG+ NRQ F+DRL   L L+  DD+
Sbjct: 173 -KNGQLIGRVFCIRDISVEKEHEEIIHFQAYHDALTGLANRQLFMDRLEHSLTLARRDDS 231

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   V+ +D+D +K++ND  G   GD++L+ +  RI   L+  D LAR+ G+ F I++  
Sbjct: 232 MT-AVLFLDLDNFKRVNDTEGHKGGDELLIKMVERINHRLREQDTLARIGGDEFVILVEL 290

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   I +   A+ ++I+    +  R   V++SIG A +    IT   +L NA++AMY 
Sbjct: 291 VKSKNNIENLCEALLETISKEFIINGRPQYVSSSIGIALYPQDGITPDSLLSNADMAMYD 350

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK+ G N    +     +   +++ I+ +L  A+ N EL +   P I L   +I+G E L
Sbjct: 351 AKNNGKNAYRFYHRKLEAHAREQMDIERELRKAINNQELEIYLQPKIGLDCNQILGAEVL 410

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W      +I    F+ IAE   +IK I  F +      +  W+    + P+ + +N++
Sbjct: 411 MRWFTASGESIPPDLFIPIAESTGLIKKIGEFAISSAISLLEQWQ-LEGIAPLKLAVNLS 469

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             +  D    + +   IS +  S  ++ +  +ES+ M N E+    + +L+  G++  LD
Sbjct: 470 IIEFQDEHFIDYIIESISNSSISGDQLIIELTESIFMENKEKMSKTMHKLKHYGVAFALD 529

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S  SYL  +P D +K + S +    + E+  AI + II +  N++  IIA+ I 
Sbjct: 530 DFGKGYSSFSYLQLLPIDYLKIDKSFLQNVITDEQSAAIAKCIIDIGHNLDLAIIAEGIE 589

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  +  +++  C+  Q   +  P+  +S  KL+++
Sbjct: 590 DQETLDYVSKTHCEMAQGFFMYRPMPSDSFTKLIRK 625


>gi|221065324|ref|ZP_03541429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220710347|gb|EED65715.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 590

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 139/589 (23%), Positives = 263/589 (44%), Gaps = 16/589 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           V  L L        +       G     + S  ERQ  A+  + D +   +     VT  
Sbjct: 13  VSELALADCQRRLGLAMSARQEGVSLSVMLSRRERQ--ALDAAPDGILLVERDGKMVTAN 70

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR---LQYEFRVRAA 488
             +  I G     + G + + L  +    +      L+S+      R   L     ++  
Sbjct: 71  AAMLAISGYERDELEGRMLDML--LPPEFQAGHGQYLNSYFSRPSRRPMGLGGVLWLQRK 128

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                 + I +    + +  +   I    D+TE  +  + +   A +D LTG+ NR  F 
Sbjct: 129 QGNAVPVDIALGYFGDDDKGL--AIAFVRDVTELHQMQQRLKFQATKDTLTGLNNRWQFG 186

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             L   L L+          + +D+D +K IND  G A GD +L  + RR+   L+    
Sbjct: 187 QELQEQLKLAQAGGEALAL-LQLDLDNFKAINDGYGHAAGDQLLREVARRLKSQLRSEGT 245

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LARL G+ F ++L+ EN + +   ++  +  ++++P       +   AS+G A +  +  
Sbjct: 246 LARLGGDEFMVLLVGEN-ATRARFWSEQILAALSIPFRHDGLALDFGASVGIALYPDNAQ 304

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHP 726
           T  ++++ A++AMY AK +G  H   F        ++RV + E L +A+    L L Y P
Sbjct: 305 TGDDLMRFADMAMYSAKAQGRGHAVFFEPGMGKEMAERVQLAERLRMALSYGGLQLHYQP 364

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +++    +V +EAL++W  P  GN+S + F+ +AE    I A+  ++L+   + I  W 
Sbjct: 365 QVKVEGATVVAVEALLRWHDPLLGNVSPARFIPVAEASGQIVALGNYVLDAACKQIALWL 424

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                 P+ + +N+++  L    L E +++ + +    P  ++L  +ES  M NP++   
Sbjct: 425 KAG--TPLRVAVNLSAYQLRQVNLVEQVRSCLRRYQVPPQWLELEVTESQAMINPDQGCE 482

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMA 906
           +L  L ++G+++ LDDFGT  S L+YL Y+P   VK     +   +  R  ++  I+ MA
Sbjct: 483 VLQGLARLGVTIALDDFGTGHSSLAYLQYLPLQRVKLGREFLF-PSPSRDRLMGGIVHMA 541

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++  ++A+ +     ++ L  +GC++ Q    +  +    +   L  
Sbjct: 542 HALDLEVVAEGVEEADQLQLLRDIGCEFFQGWLHSRAMPAEQVRDWLAA 590


>gi|186686853|ref|YP_001870046.1| diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC
           73102]
 gi|186469205|gb|ACC85005.1| diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC
           73102]
          Length = 720

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 234/442 (52%), Gaps = 4/442 (0%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++++   +L   F D+LTG+PNR  F+ RL   ++      ++   ++ +D+D++
Sbjct: 266 QEIDKRQQAEAQLLHVVFHDSLTGLPNRTLFIQRLEQGIERVKKQPSVGLALLYLDLDRF 325

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
             +N+ LG   GD +L++  RR+   ++  DI ARL  + FGI+L        +  FA  
Sbjct: 326 GVVNNSLGYTSGDQLLIAFARRLEICVRSQDIFARLEADEFGILLEDIQALSDVIGFAQL 385

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +++ + MP  L  +E+ ++ASIG AS T     +  ++ NA +AM+ AK  G    + F 
Sbjct: 386 LQEKLKMPFYLGSQEVFISASIGIASTTVGYEQAQILVGNANIAMHRAKSLGKASYKVFD 445

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +    +  + ++ DL  AVEN E  L Y PI+ L    ++G EALI+W HP+ G +  
Sbjct: 446 TPMFMETNKLLQLESDLERAVENQEFRLAYQPIVSLSTNNLIGFEALIRWQHPRRGLVFP 505

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  MI  I+ ++L    R +  W+ +     + I +NI+SK L  + L + +
Sbjct: 506 GEFISVAEETGMIVDISYWVLREACRQLYVWQQKFLNDQLAISVNISSKQLSQSNLNQEI 565

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ +T      +KL  +E+ ++ N + +   L +L+++G+ L +DDFGT  S LSYL 
Sbjct: 566 RQILEETNLDARNLKLELTETTIVENSQSTIEKLWQLKEMGVQLHVDDFGTGYSSLSYLH 625

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           + P   +K + S +           I+ +II +A N+   + A+ I     ++ L ++ C
Sbjct: 626 HFPISVLKIDRSFINRIDTNSKNAEIVSTIITLAHNLGIDVTAEGIETLEQLELLQKLQC 685

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
            Y Q    + P+  +++   L+
Sbjct: 686 KYGQGYLFSKPVKASAVKSKLR 707


>gi|33596417|ref|NP_884060.1| signalling protein [Bordetella parapertussis 12822]
 gi|33566186|emb|CAE37092.1| probable signalling protein [Bordetella parapertussis]
          Length = 691

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 123/433 (28%), Positives = 215/433 (49%), Gaps = 8/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E ++  A  D LT +PNR    +RL   +  +        +++ ID+D +K IND  
Sbjct: 254 QANEELVQMALHDTLTKLPNRALLDERLKQAIIRATAAGRG-FSLLFIDLDGFKAINDAY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV + +RI   ++  D +ARL G+ F  +L    +    A  A  +  ++ +
Sbjct: 313 GHGAGDLLLVEMAQRIKRAMRPQDCVARLGGDEFV-VLADLPDPNDAAGLAERLIDTLTV 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---VSSF 700
           P  +   E++V ASIG A +      +S +L +A+ AMYHAK     H  SF    ++  
Sbjct: 372 PAEVQGHEVSVAASIGIALFPGDGADASTLLAHADAAMYHAKRLSQTHRVSFFEPSMNED 431

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +++ + +DL LA+  ++L L Y P        +VG EAL++W+HP  G I  + F+ I
Sbjct: 432 ALEQLQLLQDLRLALPRNQLELHYQPKFVAPAGPVVGAEALLRWNHPTRGVIGPTVFIPI 491

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I +I  ++L+   R +  WRD        + +N++S      +L + ++A +++
Sbjct: 492 AERTGLIFSIGAWVLDEACRQMRQWRDM-GHADWTVAVNLSSLQFSQPDLIDSIRATLAR 550

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + +  +ES  M + E S  +L  L ++G+S+++DDFGT  S L YL  +P   
Sbjct: 551 HDLPPRCLAIEITESTAMRDAEASLTVLRELAELGVSISIDDFGTGYSSLLYLKRLPATE 610

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AI+ +II + + +   I+A+ +        LT MGCD +Q  
Sbjct: 611 LKIDRGFVNQLEHDNEDAAIVSAIIALGQKLNLKIVAEGVETLAQQSFLTEMGCDSLQGF 670

Query: 939 HVASPLGFNSILK 951
            +  PL     L 
Sbjct: 671 LLGRPLPAAEFLA 683


>gi|302130144|ref|ZP_07256134.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 705

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 208/438 (47%), Gaps = 9/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D+LTG+PNR    DR+   ++    +      +M +D+D +K +ND  
Sbjct: 254 EANHELTHRALHDSLTGLPNRTLLTDRIEQTMNKVRENGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGE--LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G   GD +L  +  R+ +   L   D LAR+ G+ F  +L+   +       A      I
Sbjct: 313 GHHTGDLLLRQVALRLRQNLHLHLHDTLARVGGDEFV-LLVELQDQQDALAVATRQVNEI 371

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
             P  + E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S
Sbjct: 372 GNPFTIGEHQLQISLSIGICMYPGNGTTQHELLVNADAAMYHTKAAGKNGYSFFDVSMNS 431

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +++ + +DL  A+++    L Y P    +    VG EAL++W+HP  G +    F+ 
Sbjct: 432 NARNQLQLSQDLRSAIKHKHFCLYYQPKFDALTGVPVGAEALLRWNHPTQGLLGPDLFIA 491

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  ++L    R +  W  Q   P   I +N+++     + L   +   ++
Sbjct: 492 LAEKTGLIIQIGEWVLNEACRQMREWYTQ-GYPHWRIAVNLSALQFCHSGLVTAVADTLA 550

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P +
Sbjct: 551 RHQLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPAN 610

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q 
Sbjct: 611 EIKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQG 670

Query: 938 SHVASPLGFNSILKLLKE 955
             +  PL     L+ ++ 
Sbjct: 671 FLLGHPLPAQQFLENIRA 688


>gi|167033339|ref|YP_001668570.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166859827|gb|ABY98234.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 695

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 210/435 (48%), Gaps = 7/435 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LT +PNR    DR+   +   A        +M ID+D +K +ND  G
Sbjct: 255 ANQELTQLALHDTLTDLPNRTLLADRIEQAIAKVAEQGGC-FALMFIDLDGFKPVNDAFG 313

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L ++  R+   L   D LAR+ G+ F  +L+         D A+     ++ P
Sbjct: 314 HHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFV-LLVELQEPNDAMDVAVKQVNLVSRP 372

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             + E ++ ++AS+G   +  +     E+L+NA+ AMYHAK  G N    F   ++S   
Sbjct: 373 FRVAEHDLQLSASLGIVLYPGNGQDQHELLRNADAAMYHAKSAGKNGYSFFDVSMNSNAR 432

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ + +DL  A+E  +  L Y P       + +G EAL++W+HP+ G +    F+ +AE
Sbjct: 433 QQLQLLQDLRQALEQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQHGLLLPDRFIGLAE 492

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  I  ++L    R +  W DQ +     + +N+++       L E +   + +  
Sbjct: 493 KTGLIIPIGEWVLIEACRQMRQWLDQGHN-GWRMAVNLSAIQFCHAGLVESVARALEQNG 551

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E+  M + + S  +L RL  +G+ L++DDFGT  S L YL  +P + +K
Sbjct: 552 LPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPANELK 611

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AI+ +I+ + + +   I+A+ +  ++    LTR+GCD +Q   +
Sbjct: 612 IDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDMQQDFLTRLGCDSLQGYLL 671

Query: 941 ASPLGFNSILKLLKE 955
             P+     +  L+ 
Sbjct: 672 GQPVPAEQFMGKLRA 686



 Score = 38.0 bits (87), Expect = 8.9,   Method: Composition-based stats.
 Identities = 22/198 (11%), Positives = 55/198 (27%), Gaps = 15/198 (7%)

Query: 222 FAMAWVVLGYISIDFGFLSKLV---NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRW 278
            A  W+  G +++  G  S         S  + +    +  A S  + +    +  W   
Sbjct: 39  AAYLWMGGGALAMGIGVWSMHFIGMLAFSLPIDLGYDLALTAFSLLIAVLSSGFALWLVS 98

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL----------ASIVLYYTYFIIY 328
              +  +     A I        +Y  + A      +            I +  +   ++
Sbjct: 99  QPSLPALQLGLGALIMGAGIACMHYTGMAALRMLPGIDYDPTLFGASLLIAVGASAAALW 158

Query: 329 HGM--KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
                + +   V  I     + + F  + M  T     +  + +  G L   +   G   
Sbjct: 159 IAFRLRRHTPYVRQIRGLAAVVMGFAIVGMHYTGMAAANFPEGSFCGALGGGLQGEGLVY 218

Query: 387 IQHVLATGYFSQGIFSDG 404
           +  +      +  + +  
Sbjct: 219 LVLITTLAVLAVALLTSV 236


>gi|107100630|ref|ZP_01364548.1| hypothetical protein PaerPA_01001656 [Pseudomonas aeruginosa PACS2]
          Length = 1120

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/582 (20%), Positives = 239/582 (41%), Gaps = 13/582 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      ++ +  + ER  + +   GD V   D         P    + G    
Sbjct: 534  IGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQ 593

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRP 501
               G         +  +  +   + +   +   R     +   + +   + H +     P
Sbjct: 594  DAIGAPHELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAP 653

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G+I+  + +  ++T+ +     +  +A  D LTG+ NR  F + L   L  +   
Sbjct: 654  VRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQER 713

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +  ID+D++K +ND  G A GD +L  L+R + +  +  D LARL G+ FG++L
Sbjct: 714  A-TQHALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLL 772

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + +      +  + +  ++      R   V ASIG  + T++  ++SE++  A++A 
Sbjct: 773  FDCDLAEAEQVASKLIEQICSVRFPWEGRLYDVGASIGITALTATSRSTSELMSQADVAC 832

Query: 682  YHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-- 735
            Y AKH G N V  ++        +   +++   L  A+EN    L    I+ +       
Sbjct: 833  YAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVGPRRDGD 892

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               E L++   P         F+  AE   ++ +I+ +++     +  +    A +  + 
Sbjct: 893  RHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEALINFGA--RIAAVEGLS 950

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I IN++   L D      +   I  +   P R+    +E+ +M     +  ++ +LR +G
Sbjct: 951  IGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVASRIVAKLRDLG 1010

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
              + LDDFG+  S  +YL     D +K +GS +          AI+ SI  +A  +    
Sbjct: 1011 CKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVT 1070

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +     +  L R+G D+ Q   V  P  F ++L  L+ 
Sbjct: 1071 VAEFVESREILDHLARLGVDFAQGYAVGRPQPFATVLDQLRS 1112



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 1/152 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V     T ++ + +            ER  LA       +W+WD+ R+R+     +  + 
Sbjct: 401 VAQYFVTQVEDIDSRKRAELERERLAERIKLATDAGQIGIWEWDLARNRLHWDFRMFDLY 460

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+ SG     +  W   +H+ D D     L+  V   + +   EFR+   + +   +   
Sbjct: 461 GIRSGPGETTVEQWKASLHVEDHDRVLRELERAVSGLQ-KFDCEFRIVRPNREVRHLRAI 519

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                + +   +R IGI +DITE +   E + 
Sbjct: 520 ATLTRDEDNRPVRMIGINSDITEIRTLAETLH 551



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 106/363 (29%), Gaps = 18/363 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF--AMAWVVLGYI 232
           LW    +     S  ++  +++ +  +   F    +   R           +   V   +
Sbjct: 82  LWMSAAFLPANLSEAIFAAMLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVL 141

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
              FG        P      +   +   L+   +        W   HA  G         
Sbjct: 142 VSVFGMGRF----PEMWARWYVGDAMGMLALLPLCMASNLAAWR--HALSGRAGVDNAML 195

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           + +   +SF             L  +++      ++         +  +    +  +  +
Sbjct: 196 LLVTLVISFVALTRLPYAFIYVLLPLLVAAASTSVFGTA-----LIGCLNTCFIAVLIAL 250

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
           G+++  + +         L   L LI   +   +++    +      +     +   A+ 
Sbjct: 251 GVFVPESSQQRFGEPLLYLPMALTLIPAFLVSVIME---RSRREQHQVAIGEAQFRGAME 307

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            S   +    +          +  +LG ++  +     ++    +++D +    ++   +
Sbjct: 308 FSAIGMALVSLEGRLFKVNEALCRMLGYSAERLG--ELSFQEITYVDDLELDLDLVRDLL 365

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R    Q E R    D +  W  I +  + +  G    ++    DI  +K++       
Sbjct: 366 AGRINSYQMEKRYLRQDGETFWARISVSLVRDEEGVAQYFVTQVEDIDSRKRAELERERL 425

Query: 533 AFQ 535
           A +
Sbjct: 426 AER 428


>gi|94263568|ref|ZP_01287379.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93456101|gb|EAT06248.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 775

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 213/441 (48%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++++E +      D LTG+PNR+ F DRL      +A ++     V+ +D+D ++ +N
Sbjct: 332 EVEQAMEQLRHQTTHDLLTGLPNRELFQDRLRQATRRAAKEER-PVAVLQLDLDNFRAVN 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A GD+VL  + RR+ + L     + RLSG+ F I+L +     + A+ A  +  +
Sbjct: 391 NNFGHAAGDEVLRVIARRLQQALADDCTVGRLSGDEFVILLPNIKECRESAEMARQILAA 450

Query: 641 IAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           +  P++      ITV  S+G A +         +L++ E+AMY AK  G      +    
Sbjct: 451 LETPVSTPHTPNITVGGSVGIACFPDDGKDDKTLLRHVEMAMYQAKKAGRGTYAFYAREL 510

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +    D +++   L  A+  ++L L Y P + + D  I+G+EAL++W   + G +    F
Sbjct: 511 NQRHQDDLVLHHKLKTALAENQLELHYQPKVAMNDGRIIGVEALLRWHDKELGQVGPDRF 570

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  ++L    R + +W        + + +N++ +     +L   +  +
Sbjct: 571 IPMAEATGLIVPLGDWVLNTACRQLAAWYAAGRE--LKMAVNLSPQQFRQPDLVNRLANI 628

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++ T      ++L  +E+  M N   +   L  L  +G++L LDDFGT  S L+YL  +P
Sbjct: 629 LAATGAPAHLLELEITETAAMENFAATSRQLHNLSDLGLTLALDDFGTGHSSLAYLKSLP 688

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S ++  T  E    I+R+++ MA ++E   +A+ +  E  +  L +  C   
Sbjct: 689 ISQLKIDRSFISDLTFEENNRIIVRAVLSMAASMELETVAEGVESEEQLDFLRQHHCTSY 748

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A  L    +   L +R
Sbjct: 749 QGWLFARALPAGQLEAFLDQR 769


>gi|226357225|ref|YP_002786965.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319215|gb|ACO47211.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 805

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 211/441 (47%), Gaps = 10/441 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  +++ + +   A  D LTG+ NR  F       L            ++ ID+D++K++
Sbjct: 353 TALEQAQQHLAYRATHDALTGLHNRAHFQAEAERHLADL---SGGELGMLFIDLDRFKQV 409

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VGD++L  + +R+  +++  D++ARL G+ F ++L    ++      A  +  
Sbjct: 410 NDTLGHDVGDELLDQVGQRLRNVVRTGDLVARLGGDEFTLLLPGLRDASDAERVARKVLA 469

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           S+A P  +   ++ +T SIG A      +  + M K+A++AMY AKH G N V ++   +
Sbjct: 470 SLAQPFQVGGHKLHITGSIGVAVAPQDGMDITTMQKHADVAMYRAKHDGKNAVRTYSAGM 529

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               + R+ ++ DL  A+ N E  L Y     +    + G EAL++W HP  G I+   F
Sbjct: 530 GDETAARMDLERDLREALRNGEFVLHYQGQFDVASGALSGYEALVRWQHPVHGMIAPGRF 589

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  ++L    R   +WR       + + +N++       +    +Q  
Sbjct: 590 IPVAEDSGLIGPLGTWVLREACRQARAWRADERG--LTMSVNVSPVQFDTADFARLVQEA 647

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P  + L  +ES V+ +   +   L RLR +G+ + LDDFGT  S LS L +IP
Sbjct: 648 LEEAGIRPECLMLELTESTVLRDVASATQQLQRLRALGVRIALDDFGTGQSALSLLRHIP 707

Query: 878 FDTVKFNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            D +K + S +     + E     LR ++ + +     ++A+ +        L  MGC  
Sbjct: 708 IDQLKIDRSFLPGPDDTDESAQVFLRLLVMLGQARRLNVVAEGVENAEHQALLREMGCPT 767

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q  +++ PL  +    LL +
Sbjct: 768 AQGFYLSRPLPAHQATALLPQ 788


>gi|190892372|ref|YP_001978914.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697651|gb|ACE91736.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 927

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 252/575 (43%), Gaps = 15/575 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           LIG+  I    +          +  R   +A+   G  +  +D     +        I  
Sbjct: 354 LIGYAKITKDNSKQKADADRIEEVSRNLDVALENIGQGICMFDGDERLLLCNKRYLEIFK 413

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              GS+H     +   + +    +     ++        ++    +RA            
Sbjct: 414 FPEGSVHA-GMGYRQIVEVGYAAHAADPNEATAQAEAHYIRNMALIRAGAGSAVHKYPSG 472

Query: 500 RPMSNSNGDIL--RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +      +    ++    DIT++ KS E ++  A  D LTG+PNR  F + +   + +
Sbjct: 473 MSIQQHVNMLANGGWVVTFEDITDRLKSEEQVVFLAKHDGLTGLPNRLQFGESVAEEMMI 532

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +         V+ ID+DK+K+IND  G A GD VLV L RR+ E  +  + +AR  G+ F
Sbjct: 533 ADRVRG-NVAVIGIDLDKFKEINDQHGHATGDKVLVELARRLEEARQEGEFIARFGGDEF 591

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
                  +    + DF   +  ++   + +   EI   AS+G A + S  ++   +L NA
Sbjct: 592 AA-TKRFDELSALHDFIGRLEGALTGTVAIDGFEIKTGASLGVALYPSDAVSVDGLLANA 650

Query: 678 ELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY AK             +      R  +  DL  +++ +EL+L Y     +   EI
Sbjct: 651 DLAMYRAKQSLLQRVCFYEAAMDENARRRRALANDLWASIDRNELHLHYQVQKSVRTGEI 710

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G E L++W H   GNI   +F+ +AEE   I  I  ++L    R+  SW +        
Sbjct: 711 TGYEVLLRWRHHARGNIPPMDFIGLAEECGAILPIGEWVLREACREAASWNNSY-----K 765

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I +N++   L   ++   +  ++++T  +P R+++  +ES ++ + +++   +  ++ +G
Sbjct: 766 IAVNLSPIQLGHADMAVVISGILAETGLNPRRLEIEITESSIIVDKDKALRTMRAIKALG 825

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           +S+ +DDFGT  S L  L   PFD +K + S M    ++ +  AI+R+I+ + +++E  +
Sbjct: 826 VSIAIDDFGTGYSSLETLRSFPFDKIKLDKSFMAEVETSPQSKAIVRAILALGRSLEVPV 885

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +A+ +  +  +  L+   CD  Q   +  P     
Sbjct: 886 LAEGVETQAQLDTLSEEQCDEAQGYLLGRPQAMGE 920



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 74/255 (29%), Gaps = 13/255 (5%)

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
              +    +L           AS   +++   V +      + G  G      L P  +L
Sbjct: 123 IGLMHFSGMLAIEFPGEISWDASFVVVSVVLGVAFSVAAFRFAGRSGRSTFGRLAPTALL 182

Query: 347 IFIWFIGLWMAITK---------RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
                   + A                 ++ PAL+   +  V     T           S
Sbjct: 183 TLGVVSLHFTATAGVTVIPGITALDPAMLLSPALMAVTIAAVTFSLLTAGFAAAIFAVRS 242

Query: 398 QGIFSDGER-QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
           Q   +  ER   L V G  D  ++  D                G ++  + G   ++  +
Sbjct: 243 QAKAASAERNFKLLVQGVTDYAIYMLDPDGKVSNWNAGAERTKGYSADEIVGK--DFSLF 300

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
               DR     +         G+ + +      D    W  + I P+ +  G ++ Y  I
Sbjct: 301 YSAEDRRKGLPLRALETARSDGKFEAQGWRYRKDGSSFWAHVVIDPIYDETGQLIGYAKI 360

Query: 516 ANDITEQKKSLEGIL 530
             D ++QK   + I 
Sbjct: 361 TKDNSKQKADADRIE 375


>gi|32472612|ref|NP_865606.1| response regulator [Rhodopirellula baltica SH 1]
 gi|32443849|emb|CAD73290.1| conserved hypothetical protein-putative response regulator
           [Rhodopirellula baltica SH 1]
          Length = 614

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 117/430 (27%), Positives = 211/430 (49%), Gaps = 11/430 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     +   A  D LTG+ NR  F DRL   L  + +     P V++ID+D++K IND 
Sbjct: 178 RVRTAELERVALHDGLTGLANRIKFNDRLRDSLANANSQP---PAVLLIDLDQFKLINDT 234

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD+++  + +R+  ++    ++ARL G+ F ++L        I   A  ++ S+A
Sbjct: 235 LGHPAGDELIRIVGQRLSAVVGAAGLVARLGGDEFAVVLDHNPTQRTIESIADGIQSSVA 294

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P+ L     +VTASIG          + E+++NA++AMY AK  G +    F   +   
Sbjct: 295 EPVLLDGVPFSVTASIGICGSPDENCDADELIRNADIAMYRAKADGRDCARYFEKGMDQQ 354

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R M++ +L  A+ N E  L + P++    +++   EAL++W+HP+ G +   +F+ +
Sbjct: 355 LRQRQMMEANLRAAIANDEFVLHFQPLLDPNTKKVCSFEALLRWEHPERGLVPPLDFIPL 414

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ I  ++L    ++  +W +      I + +N+++       L + +   I +
Sbjct: 415 AEETGLIRQIGDWVLLEACKEACNWPEH-----IRVAVNVSAIQFRGGTLPKSVSDAIEQ 469

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +  +  R+++  +ESV+MG    +   L  LR  G+ + LDDFGT  S LSYL    FD 
Sbjct: 470 SGIAGERLEIEITESVLMGESLDALDQLHALRAQGVRIALDDFGTGYSSLSYLRRFRFDK 529

Query: 881 VKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +    +    AI+ +I  + K +     A+ I  E  ++ +   G   +Q   
Sbjct: 530 LKMDRSFVQNLNQADAMAIVSTIANLGKCLGMATTAEGIETEQQMRCVMEHGFTEVQGYL 589

Query: 940 VASPLGFNSI 949
              P+    I
Sbjct: 590 YGRPIPSTEI 599


>gi|116049113|ref|YP_792085.1| putative sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390448|ref|ZP_06879923.1| putative sensor protein [Pseudomonas aeruginosa PAb1]
 gi|313106155|ref|ZP_07792408.1| hypothetical protein PA39016_000210007 [Pseudomonas aeruginosa 39016]
 gi|115584334|gb|ABJ10349.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310878910|gb|EFQ37504.1| hypothetical protein PA39016_000210007 [Pseudomonas aeruginosa 39016]
          Length = 1120

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 120/582 (20%), Positives = 239/582 (41%), Gaps = 13/582 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      ++ +  + ER  + +   GD V   D         P    + G    
Sbjct: 534  IGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQ 593

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRP 501
               G         +  +  +   + +   +   R     +   + +   + H +     P
Sbjct: 594  DAIGAPHELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAP 653

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G+I+  + +  ++T+ +     +  +A  D LTG+ NR  F + L   L  +   
Sbjct: 654  VRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQER 713

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +  ID+D++K +ND  G A GD +L  L+R + +  +  D LARL G+ FG++L
Sbjct: 714  A-TQHALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLL 772

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + +      +  + +  ++      R   V ASIG  + T++  ++SE++  A++A 
Sbjct: 773  FDCDLAEAEQVASKLIEQICSVRFPWEGRLYDVGASIGITALTATSRSTSELMSQADVAC 832

Query: 682  YHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-- 735
            Y AKH G N V  ++        +   +++   L  A+EN    L    I+ +       
Sbjct: 833  YAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVGPRRDGD 892

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               E L++   P         F+  AE   ++ +I+ +++     +  +    A +  + 
Sbjct: 893  RHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEALINFGA--RIAAVEGLS 950

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I IN++   L D      +   I  +   P R+    +E+ +M     +  ++ +LR +G
Sbjct: 951  IGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVASRIVAKLRDLG 1010

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
              + LDDFG+  S  +YL     D +K +GS +          AI+ SI  +A  +    
Sbjct: 1011 CKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVT 1070

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +     +  L R+G D+ Q   V  P  F ++L  L+ 
Sbjct: 1071 VAEFVESREILDHLARLGVDFAQGYAVGRPQPFATVLDQLRS 1112



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V     T ++ + +            ER  LA       +W+WD+ R+R+     +  + 
Sbjct: 401 VAQYFVTQVEDIDSRKRAELERERLAERIKLATDAGQIGIWEWDLARNRLHWDFRMFDLY 460

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+ SG     +  W   +H  D D     L+  V   + +   EFR+   + +   +   
Sbjct: 461 GIRSGPGETTVEQWKASLHAEDHDRVLRELERAVSGLQ-KFDCEFRIVRPNREVRHLRAI 519

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                + +   +R IGI +DITE +   E + 
Sbjct: 520 ATLTRDEDNRPVRMIGINSDITEIRTLAETLH 551



 Score = 89.6 bits (221), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 106/363 (29%), Gaps = 18/363 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF--AMAWVVLGYI 232
           LW    +     S  ++  +++ +  +   F    +   R           +   V   +
Sbjct: 82  LWMSAAFLPANLSEAIFAAMLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVL 141

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
              FG        P      +   +   L+   +        W   HA  G         
Sbjct: 142 VSVFGMGRF----PEMWARWYVGDAMGMLALLPLCMASNLAAWR--HALSGRAGVDNAML 195

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           + +   +SF             L  +++      ++         +  +    +  +  +
Sbjct: 196 LLVTLVISFVALTRLPYAFIYVLLPLLVAAASTSVFGTA-----LIGCLNTCFIAVLIAL 250

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
           G+++  + +         L   L LI   +   +++    +      +     +   A+ 
Sbjct: 251 GVFVPESSQQRFGEPLLYLPMALTLIPAFLVSVIME---RSRREQHQVAIGEAQFRGAME 307

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            S   +    +          +  +LG ++  +     ++    +++D +    ++   +
Sbjct: 308 FSAIGMALVSLEGRLFKVNEALCRMLGYSAERLG--ELSFQEITYVDDLELDLDLVRDLL 365

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R    Q E R    D +  W  I +  + +  G    ++    DI  +K++       
Sbjct: 366 AGRINSYQMEKRYLRQDGETFWARISVSLVRDEEGVAQYFVTQVEDIDSRKRAELERERL 425

Query: 533 AFQ 535
           A +
Sbjct: 426 AER 428


>gi|295703601|ref|YP_003596676.1| diguanylate cyclase/phosphodiesterase [Bacillus megaterium DSM 319]
 gi|294801260|gb|ADF38326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium DSM 319]
          Length = 922

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 148/794 (18%), Positives = 312/794 (39%), Gaps = 73/794 (9%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSM----LIPTFAMAWVVLGYISIDF---------GFLSK 241
            + +   +A   T  ++   S +    L          +  I+I            F   
Sbjct: 148 FLSILIAVAASNTALWLGFYSKLNEGKLTVFAKFICSTIMGIAIAGMHYTGMQAASFSGM 207

Query: 242 LVNLPSGELLIW-RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
            ++  S    +     S + +   + +F  ++L                    + L  + 
Sbjct: 208 SMSEHSNGFALNPIYLSVVIVFFIVCLFTAVFLTIFMDRRVQKQEVLKWAFFESALDAIL 267

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
                           ++       +I   +                             
Sbjct: 268 VIDEKRHVLSLNYAAETLFSLKASDVIGRNVVKLLPFYEF--------------SSLQDG 313

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTV-------IQHVLATGYFSQGIFSDGERQSLAVLG 413
           R+++ ++       + + V+ +G          I+++       + +     R       
Sbjct: 314 RIEHSLLISNREVTVEITVMAVGIEETVEYMLYIRNMTQEREAEKTLIEAKNRYENLFYS 373

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472
           S   +       + V+    +  +LG+    + G  + ++     + D       +    
Sbjct: 374 SPLAI-MVHREEEVVSVNDAMIQLLGVTEDQLVGKSLYDFFSSEQVPDIKKGLKAVKDRK 432

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              R  L    ++  A  +  ++ ++   +   NG+ L +  +  D+TEQKK+ E +   
Sbjct: 433 DEPRSPLAQ-LKMFNALGKELFLEVKSTLIQ-INGETL-FQTVTRDVTEQKKAQESLQYM 489

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LT +PNR  F   +   +D +A     +   + +D+D++K++ND LG   GD ++
Sbjct: 490 AFHDMLTDLPNRSMFSSIVEKSIDSAAASGK-KLHFLFLDLDRFKQVNDTLGHHAGDQLM 548

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           + +  R+   ++  D+L+R  G+ F ++L    +   +     ++   ++ P  +L R++
Sbjct: 549 LQVVDRMKSCIRNQDVLSRFGGDEFLVLLHDRTDEE-VKKICQSLNDCLSTPFVVLSRDV 607

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
            +  SIG + +     T   ++++A+LAMY  K +G NH   ++         R+ I++ 
Sbjct: 608 YLGVSIGVSLFPKDGKTLEVLVRHADLAMYEVKKQGRNHYLFYQKEMQVHTTRRMRIEDG 667

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A E  E+ L Y P + +    IVG+EALI+W H + G IS +EF+ IAEE  +I  +
Sbjct: 668 LRKAFELGEMELHYQPKVNIQSGHIVGVEALIRWTHAEMGVISPAEFIPIAEETGVIVTL 727

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L++       W+ Q   PP+ + +NI+S D    +  + +  ++ +       ++L
Sbjct: 728 TKWVLKKACHQNKYWQLQGL-PPLKMSVNISSVDFGTTDFVDYVLGVLREVELESRYLEL 786

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV M + E++   L  L+  G+ +++DDFG+  S  SY+  +P  T+K + S +  
Sbjct: 787 EITESVTMKHVEQTIEKLQILKDAGVFISIDDFGSGYSSFSYIQKLPIHTLKIDRSFIKD 846

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIK-------------ELTRMGCDYI 935
                   +I+R+II +AK++              +               L +  CD +
Sbjct: 847 LDPNTTEVSIVRAIITLAKSL-------------QLSVVAEGVEEVEQVELLHKEKCDEV 893

Query: 936 QDSHVASPLGFNSI 949
           Q  + + P+     
Sbjct: 894 QGYYFSKPISAEEF 907


>gi|262172265|ref|ZP_06039943.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus
           MB-451]
 gi|261893341|gb|EEY39327.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus
           MB-451]
          Length = 632

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 226/458 (49%), Gaps = 10/458 (2%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P    + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  +  + 
Sbjct: 156 PRLTQDDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLKKLSDAITTAQ 215

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            + +   T+  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +
Sbjct: 216 -NSHTTGTLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAV 274

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++    +  K  + A  +   I+ P  + + ++  T SIG + + S  I++ ++L+ A+ 
Sbjct: 275 LIPYL-SPNKAEEVAKQLLTLISNPYTIDDHQLYCTVSIGISIFPSVGISNIDVLRQADT 333

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+   +L L Y P +      IVG
Sbjct: 334 ALYRAKAGGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQHQLELYYQPQVDEQHN-IVG 392

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  
Sbjct: 393 VEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYSQWKKQGILPPHFRR 452

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+          E +   + +   +   I+L  +ES+++ N E +   + +L++  
Sbjct: 453 LAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAMQKMAQLKESH 512

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           IS+++DDFGT  S L YL ++  D +K + S ++     +   AI+ +I+ +A+ +   +
Sbjct: 513 ISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVSQLHLDDNDQAIVDTILAIARKLNLEV 572

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IA+ +    ++  L ++GC+  Q      PL    I +
Sbjct: 573 IAEGVEDTSELAALKQLGCNQFQGYLFDKPLRAEDIAQ 610


>gi|90418866|ref|ZP_01226777.1| putative sensory protein, diguanylate cyclase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336946|gb|EAS50651.1| putative sensory protein, diguanylate cyclase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 632

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 113/434 (26%), Positives = 205/434 (47%), Gaps = 12/434 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A  D LT +PNR  F + L   +      D     V+ +D+D +K++ND+LG A
Sbjct: 175 DRASFLASHDPLTQLPNRSLFNEWLVRSVADVDRQDG-SMAVLCLDLDHFKEVNDLLGHA 233

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD++L  +T R+   L+  DILARL G+ F II          A  A  + + ++ P +
Sbjct: 234 AGDELLRQVTERMTATLRRYDILARLGGDEFAIIQKHFAQPAGSARLAERLIEELSKPFD 293

Query: 647 LLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           L   E+ +  SIG A           ++L+ A++AMY AK  G      F  +       
Sbjct: 294 LKGNEVLIGVSIGVALRRDPEDRDGQDLLRQADMAMYRAKGEGRGTFRYFEDAMNDRLVA 353

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  L  A+  +EL L Y P I +    + G+EALI+W   + G +  ++F+ +AEE
Sbjct: 354 RKKVELALRHAIARNELQLHYQPQIDMKTNSVKGVEALIRWYRGEDGIVQPNDFIQLAEE 413

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  +++    R    W +      +   +N++        L E +++ +++   
Sbjct: 414 TGLIIPIGEWVIREACRQAGDWPE------LTFAVNVSPVQFRHGNLVETVRSALAEAGV 467

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+++  +E+V++ + + +   L  L+ +G+ + +DDFGT  S LSYL   PFD +K 
Sbjct: 468 EPHRLEIEITENVLLSHTDETIETLRALQAMGVRIAMDDFGTGYSSLSYLRRFPFDKIKI 527

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S  +         +I+ ++I +   +     A+ +      + L   GC+ +Q    +
Sbjct: 528 DRSFTSDLGTCFDADSIVAAVINLGAAMGMVSNAEGVETLEQAELLRAQGCNEVQGFLYS 587

Query: 942 SPLGFNSILKLLKE 955
            P+   SI +LL +
Sbjct: 588 RPVPSASIAQLLAD 601


>gi|254000469|ref|YP_003052532.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253987148|gb|ACT52005.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 782

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 208/439 (47%), Gaps = 10/439 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR  F DRLT  L LSA ++N R  ++ IDID +K IND LG 
Sbjct: 338 QMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNN-RVGMLFIDIDHFKNINDSLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD++LV++  R+   ++  D  ARL G+ F +++    N+ + A  A  + +++  P 
Sbjct: 397 VIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEALKTPF 456

Query: 646 NLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702
           +L    E+ ++ASIG +        ++++++NA+ AMY AK  G N  + +         
Sbjct: 457 HLSGNCEVVISASIGISVCPEDTQDATQLIRNADSAMYRAKDTGRNRYQFYTEELTQRAQ 516

Query: 703 DRVMIKEDLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +R+M +  L  A+ +    L Y PI           I   E LI+W       I    F+
Sbjct: 517 ERLMTESRLRQAIRDKAFVLHYQPIYTKGEDGGAPSIFSCECLIRWQQDDGSLIYPDLFI 576

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  +I  I  ++L+     +  W  +     + + +NI+++   D      +  ++
Sbjct: 577 PCAEETGLIIPIGEWVLDHACAQLAEWDARLPDNTLSMAVNISARHFCDANFVMTVHEVL 636

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P+R+ +  +E+ VM   + +   L  L + G+ + LDDFGT  S L+ L  +P 
Sbjct: 637 KRHAIAPARLIIEITENAVMDRMDIAIPTLETLVRTGVRIALDDFGTGHSSLAKLKTLPI 696

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +     +   + +  SII MA+ +    +A+ +  +     L + GCD  Q
Sbjct: 697 HALKIDREFVKDIPDSTDDMQLAASIIRMAQGLHLQTVAEGVETQEQYDFLAQAGCDKFQ 756

Query: 937 DSHVASPLGFNSILKLLKE 955
              ++ P+    I  LL  
Sbjct: 757 GYLLSRPVTAEKIYTLLAA 775


>gi|90412493|ref|ZP_01220496.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum 3TCK]
 gi|90326530|gb|EAS42936.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium profundum 3TCK]
          Length = 679

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 220/442 (49%), Gaps = 10/442 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D  E       +      D LTG+ NR  F  RL +++      +     ++ +DID 
Sbjct: 236 LQDAAENTVQQGQVEQLVHTDPLTGLYNRHGFSRRLESLI-----TNETPLVMLYLDIDN 290

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG  +GD VL  +++R+  LL    I+  L G+ FGI+L    +       A 
Sbjct: 291 FKNINDSLGHHIGDRVLQEISQRLRRLLPENAIIGHLGGDEFGIVLSEPEHDRAGDLVAQ 350

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I  P +L      +  SIG  S+  +   +  +L+NA+ AMY AK+RG N +  F
Sbjct: 351 QVISLINQPFDLHHFSKHLACSIGMVSYPGNGNDARILLQNADTAMYEAKNRGRNRLVKF 410

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              ++     R+ ++ +L   ++N+ L + Y P +   D  I G EAL++W HP  G IS
Sbjct: 411 NEAMNKEARMRLWLEIELQKVLQNNGLEVWYQPKVNARDFAIDGAEALVRWKHPVEGYIS 470

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AE   +I+ + L ++  +   +  W+ Q  +    + IN++ +   +  L + 
Sbjct: 471 PAQFIPVAENSGLIEQLGLVVMREVFTTVRRWKQQGILSG-RVAINLSPQQFGNPNLIDF 529

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L+  T  + + I    +ES VM + E +  +L  ++K+G +L++DDFGT  S LSYL
Sbjct: 530 VKKLLKSTGVNATDITFELTESAVMSDGEHTIQMLNAIKKLGFALSIDDFGTGYSSLSYL 589

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K + + +       K++ ++ +II + K +  +I+A+ +        L+ + 
Sbjct: 590 ARFPLDELKIDRAFINDIDTVPKQVTLIENIINLGKALNMSIVAEGVETRQQATLLSNLN 649

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           CDYIQ  H   PL  N +  +L
Sbjct: 650 CDYIQGFHFYRPLPKNELEAIL 671



 Score = 41.9 bits (97), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 5/124 (4%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           L    S  +    D   + +        I GL    + G   +    +      + R   
Sbjct: 12  LLTDNSPFLFAVLDPQHNYLVVNNRYCEISGLQRDDLVGQNDS--DILGQAFYRSLRPFY 69

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +         ++ E  V   +     M   + P+ N  GD+   +  + D +E++  +  
Sbjct: 70  ERAFQGE--SVEGEV-VLDDNRHETSMHFSLSPLRNKIGDVSHIVLHSVDTSERQILVNS 126

Query: 529 ILCN 532
           +   
Sbjct: 127 LEEL 130


>gi|289207674|ref|YP_003459740.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943305|gb|ADC71004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 817

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 121/577 (20%), Positives = 233/577 (40%), Gaps = 15/577 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +         S+ +R    +    D V   D         P    +LG+ + ++ G   +
Sbjct: 237 SLRAAEASTASERDRLLTTLHSISDGVLTADTTGRLTYLNPSARDLLGVDATAVQGQRLD 296

Query: 452 WLPYIHIND---RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               + + D          +   +         E  +R  D     + + + P+   +  
Sbjct: 297 --ELLELEDTHTGHRVMNPVTQCLETGMTLESPERVLRRPDGAARVVRLLVSPLRRPDHH 354

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + + +D TE  +  + +   A  D LTG+ NR+ F  RL   L  +  + +    +
Sbjct: 355 SEGVVVVLHDHTELWRMTQQLNHQATHDELTGLCNRREFERRLDEAL-RTLEEGDTPHAL 413

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D+D++K IND  G   GD +L  L   +   ++  D LARL G+ FG++L       
Sbjct: 414 FYMDLDQFKIINDTCGHQAGDALLRELADLLPAHIRDSDTLARLGGDEFGLLLRHCPVER 473

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A     +  +  +  +   R   V  SIG            E+L  A+ A Y AK  G
Sbjct: 474 AEAIGNKLLATAQGLRFSWEGRRFDVGMSIGLVPIEGPGQNLPEVLSQADSACYVAKDLG 533

Query: 689 GNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALI 742
            N + +++ S      R   +     L  A+E +       P+      D  +  +E L+
Sbjct: 534 RNRLYTWKPSDQILRRRHGEMEWVGRLRAALEEARFVAYAQPVKPLNGADLPLDHVEILL 593

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIA 801
           +        I+   F+  AE   ++  I+  ++E + R +   RD+     P+ + IN++
Sbjct: 594 RLHGEDGTLITPGAFIPAAERYHLMPEIDRHVVELVFRQLADHRDRNPHHAPVVVSINLS 653

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + L  + + E + + +S+      +I    +E+  + + +R++ L+  LR +G   +LD
Sbjct: 654 GQSLAQDGMLEFITSRMSQFRIQAQQIIFEVTETAAISHHDRAQGLIRALRYMGCRFSLD 713

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S   YL  +P D +K +GS +          A++ +I  +   +    IA+ + 
Sbjct: 714 DFGSGLSSFGYLKNLPVDFLKVDGSFVRDIATNAVDAAMVTAIHRVGHVLGLRTIAECVE 773

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E  +  L  +G D++Q  H+A P+     L  L  +
Sbjct: 774 SEETMHHLREIGLDFVQGYHLAKPIPLTDHLAALASQ 810



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDN 463
           R       + +     +     V      + +LG A   + G        IHI   D + 
Sbjct: 9   RFQRLFEQAPEAQLVLNRAGHVVAANQAASRLLGYAQDELTG-------GIHITTIDLEA 61

Query: 464 FRTILDSFVGYRRGRL--QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +  +D   G    RL  ++E R R  D       I I  +    G+ +  +    DIT 
Sbjct: 62  TQADVDRAHGQPDERLPARFETRYRRRDGAEFPAEININAIH--TGEDIEVLATVRDITR 119

Query: 522 QKKSLEGILCN 532
           Q++S + +   
Sbjct: 120 QQQSEQALHEL 130


>gi|300718391|ref|YP_003743194.1| Diguanylate cyclase (GGDEF domain) [Erwinia billingiae Eb661]
 gi|299064227|emb|CAX61347.1| Diguanylate cyclase (GGDEF domain) [Erwinia billingiae Eb661]
          Length = 710

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 122/432 (28%), Positives = 214/432 (49%), Gaps = 7/432 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  DNLT +PNR    DRL   ++ +   +N    +M +D+D +K +ND  G
Sbjct: 253 ANRELAQLALHDNLTRLPNRILLEDRLDQAMNKAVR-ENTSFALMFMDLDGFKAVNDAFG 311

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD++LV++T R+  LLK    LARL G+ F  +L+  N+    A  A  + K+I  P
Sbjct: 312 HHIGDNLLVAVTDRMNHLLKGHHTLARLGGDEFV-LLVEINDPNDAATTADMLVKAIDQP 370

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
             +   E+ V+ SIG A +        E++ NA+ AMYH K+ G N    F+  ++    
Sbjct: 371 FEISRYELMVSLSIGIAVFPGDGNDERELMFNADAAMYHTKNNGRNGYTFFQPSMNMIAQ 430

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +  DL LA E  EL L Y P        I+G EALI+W HP+ G +S   F+ +AE
Sbjct: 431 SQLQLINDLWLAQEREELRLFYQPKFCAPQGPILGFEALIRWQHPERGLMSPDVFLPLAE 490

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I +I  +++    R +  W  Q   P   + +N+++       L E +   +    
Sbjct: 491 KTGLIVSIGNWVINEACRQLRIWHLQ-GNPHWSVAVNLSALQFEQPGLVETVLTALKVHH 549

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +E+  M +P+ S  +L +L  +G+  ++DDFGT  S L YL  +P   +K
Sbjct: 550 IPAELLTLEVTETTAMRDPDESIRILTQLTDLGVKASIDDFGTGYSSLLYLKRLPASELK 609

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +       +   I+ +I+ +A+ +   ++A+ +  E     LT +GC+ +Q   +
Sbjct: 610 IDRAFVNELQAQSEDATIVTAIVALAQTLNLKVVAEGVETEEQQAFLTSLGCNSLQGYLL 669

Query: 941 ASPLGFNSILKL 952
             P+  + +  L
Sbjct: 670 GRPIPADQVAGL 681


>gi|225872576|ref|YP_002754031.1| bacterial signalling protein N terminal repeat/GGDEF/EAL domain
           protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793352|gb|ACO33442.1| bacterial signalling protein N terminal repeat/GGDEF/EAL domain
           protein [Acidobacterium capsulatum ATCC 51196]
          Length = 698

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 214/436 (49%), Gaps = 7/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    + E +   A  D LT +PNR  F DRL   ++++  +      V+ +D+D +K+I
Sbjct: 258 TSLADANEELQFLALHDALTKLPNRALFEDRLRQEVEIARREQTA-FAVLFLDLDGFKQI 316

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD +LV    RI   ++  D LARL G+ F  +L +     + A+ A  +  
Sbjct: 317 NDAYGHHVGDLLLVEAAGRICASVRARDTLARLGGDEFV-LLAAIKEPSEAANLADKLVS 375

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P ++ E ++ ++ SIG A +      + +++K+A+ AMYHAK  G +    F  S 
Sbjct: 376 LLQNPFHVAELDLQISVSIGIAIFHGRDRDARDLVKHADAAMYHAKALGRSGYCFFEASM 435

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +++ + +DL LA+   EL L Y P +      ++G+EAL++W+HP+ G ++   F
Sbjct: 436 AEDAQNQLKLLQDLRLALSREELALYYQPKVETASRAVIGVEALVRWNHPERGLLTPDLF 495

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  ++L    R +  WR         I +N+++       L + ++  
Sbjct: 496 IPLAEKTGLIFQIGSWVLNEACRQMSLWRAA-GHTGWTISVNLSAMQFNHPALIQMVRET 554

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     SP  + L  +E+  M N + S  +L +L  +G+ +++DDFGT  S L YL  +P
Sbjct: 555 LEAHALSPYCLMLEITETTAMHNADNSLAILQQLSDMGVRISIDDFGTGYSSLLYLKRLP 614

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +          AI+ SI+ + + +   ++A+ +        L ++GC+ +
Sbjct: 615 ASELKIDRGFVQDLATNSDDAAIIASIVALGRTLNLKVVAEGVETPEQQDYLAQLGCNSL 674

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  PL     L 
Sbjct: 675 QGYLLGRPLPGEEFLA 690


>gi|254509047|ref|ZP_05121151.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548031|gb|EED25052.1| sensory box/ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 825

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 223/441 (50%), Gaps = 8/441 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D ++ +++ + +   A  D LTG+PNR    + +   ++ S      +  VM +D+D
Sbjct: 382 INSDFSQLQQTKDKLEHMALHDELTGLPNRSLLHEHINAGIERS-RSQCQQLAVMFVDLD 440

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND+ G + GD +L  + ++    L+  + +AR  G+ F       NN  +     
Sbjct: 441 DFKKVNDLYGHSAGDRLLSEIGKKFEAFLQPDEFVARFGGDEFIFCFPELNNLAETEKKV 500

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
             ++        +  + +  + SIG + + +      +++  A++ +Y +K   +G    
Sbjct: 501 ELIKDVFKQQFVIDNKVLYASCSIGVSMFPTDGDEPEDLISKADIVLYKSKARQKGDVLF 560

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               ++       +++ +L  A+E  EL +VY P I     +I G+E+L++W +P+ G++
Sbjct: 561 FDSTINQQVQYDFLLERELRGAIERGELSVVYQPQINAKTGKIYGVESLLRWHNPQLGHV 620

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE+ +I  +  F+LER   +I           + + +NI+   L++     
Sbjct: 621 SPLEFITLAEEIGLISELGEFVLERSCEEI---NKIFPDSDLALSVNISPMQLVNESFVT 677

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + +  +K    P+RI L  +E+V++ +  +   ++ +L+++G +++LDDFGT  S LSY
Sbjct: 678 QLLSASAKHAMPPNRITLEITENVLINDLPKVTPIINQLKELGFTISLDDFGTGYSSLSY 737

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K +   +     +E+  +++++I+ +A++ +  ++A+ +  +     L   
Sbjct: 738 LSNLPLDELKIDRVFIDKMLNSEQSNSLVKAILAIARSSDMRVVAEGVETQAQKVRLIEY 797

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GCD +Q   +  PL  + + K
Sbjct: 798 GCDLLQGYFIERPLSADLLAK 818


>gi|152989912|ref|YP_001355634.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421773|dbj|BAF69277.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 755

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 166/781 (21%), Positives = 311/781 (39%), Gaps = 54/781 (6%)

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV 243
                 L+  +   ++S + +   I +MV      +        +L    +      +  
Sbjct: 12  KEQLDQLFNNLKYSLSSTVVLSTLIGFMVYSHEKSVKALFWLLFMLSLSLVRLVIKWRYE 71

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
             PS +L  + +   I L  S + F  +         K  +     I  +A L   +   
Sbjct: 72  KAPSPDLQYYFSLFVIFLVLSGVGFASL---IYLLFPKSVFDQILFIFVMAGLSAGAI-- 126

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
                S    +  +++LY    I+    +     +  +P  I   + F+ L+  +     
Sbjct: 127 -----SSLHYSKTAVILYQVSLILPVAFR-----LFFVPGSIYPVMGFVLLFYLVMMINL 176

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           +       +  L L             LA     + +    +R           ++ ++ 
Sbjct: 177 SLRTYQTYINTLKL------------KLAYSQKQKDLSIQSQRFYYLFHNIPLGIFFYNK 224

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                      A +LG++   + G   N L      D+     +L      + G  +  +
Sbjct: 225 DLRITDCNDFFAHMLGVSKDELLGFDMNRL-----QDK-RILPVLKEPFSKKNGWYRGFY 278

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
               +   F   +       +    I+  +G+  D+T  K+  + I   A+ D LTG+  
Sbjct: 279 HSTLSRKVFFVELYTTYIQID--HQIIEGLGVVIDLTRLKEYQDKIEEMAYYDELTGLAK 336

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R    + +   +     D      ++ +D+D +K+IND LG  +GD  L ++ +RI E  
Sbjct: 337 RTVLFESIDLAIKKVKRDKKYSI-LIYMDLDNFKEINDTLGHNIGDLFLKTIAKRIQEYT 395

Query: 604 KFPDILARLSGNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASI 658
           +  DI AR+ G+ F I+L+  +     A     + A  + K+I+ P+ + +  I  T SI
Sbjct: 396 REVDIAARMGGDEFAILLLEISQDKNRALIEGMEVAKRLAKAISKPVTIEDHTIQTTVSI 455

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVE 716
           G A        + EM+K A+ AMY  K    N V+ F             +K DL  A++
Sbjct: 456 GVALIDEKSKNAFEMIKFADSAMYKIKRSNKNSVQFFNEEMKGEIEHLYKVKYDLERALQ 515

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N E  L   P        IVG EAL++W+HPK G +   EF+ +AEE  M++ I+  +L 
Sbjct: 516 NKEFILYLQPQFDQK-RNIVGAEALLRWNHPKRGLLYPGEFLFVAEEFGMMQRISDEVLR 574

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                ++          + I +NI+  D+        +++L   +      + L  +E V
Sbjct: 575 LAKNILVRLPK-----KMKIAVNISGSDIYSEYFYNTLRSLFDHS--LSRYLDLEITEQV 627

Query: 837 VMGNPERSRLLLGRLR-KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           ++ +  ++  ++ R++ ++ +  ++DDFGT  S L YL  +P D +K + S +       
Sbjct: 628 LIKDASKAMEIISRIKKELKVEFSIDDFGTGYSSLQYLRQLPIDFLKIDKSFIDDMFVDG 687

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               I+ +II MAKN+    IA+ +  +   +EL  MG D  Q  ++A P+ +    KLL
Sbjct: 688 NDYIIVSTIINMAKNLGLNTIAEGVETKEQFEELKDMGVDCFQGYYLAKPMPYEEFEKLL 747

Query: 954 K 954
           +
Sbjct: 748 R 748


>gi|188581340|ref|YP_001924785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179344838|gb|ACB80250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 700

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 135/564 (23%), Positives = 245/564 (43%), Gaps = 29/564 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL---GLASGSMHGP 448
                +  + +  +   LA+      +   D     V     +  IL   G         
Sbjct: 126 EKRASAVKLDAALDNLDLAMSNMAQGLCLIDGEGRVVLANERMHEILAVPGCDPLVGAAI 185

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                  +  +        L     + R  L  +    ++         RI  ++     
Sbjct: 186 RAVLSEALSED------AALVFVADHLRPDLGLD----SSAVSEIVHRERILSVTTRRLA 235

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++    D+TE+++    I   A  D LT + NR +    LT  L    ++      V
Sbjct: 236 AGGWVSTFVDVTERRQFERQIQHLAQHDLLTDLANRATLHQALTETLA---SETWESCAV 292

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D++K IND  G A GD +L  + RR+   ++  D++ARL G+ F +IL    +  
Sbjct: 293 LYIDLDRFKPINDTFGHAAGDQLLQEVARRLRRTVRAQDVIARLGGDEFALILRP-ADPQ 351

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +A  A  + +++  P  +    I + ASIG A+   +      +L+NA+LA+Y AK  G
Sbjct: 352 HLAGTAQQILEALNQPYAVRRLPIRIGASIGIAAAPLTGRDPDLLLRNADLALYEAKKEG 411

Query: 689 GNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    +  S     + R  ++ DL  A+E  E  L Y PI+R      +G EAL++W  
Sbjct: 412 RNRYSFYNPSMGDTAAARASLEADLNRALEQREFVLHYQPIVRARTGATIGFEALLRWRR 471

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P    IS ++F+  AEE  ++  I  ++L    R+  +W        + + +N+++  L 
Sbjct: 472 PDGVAISPADFVPAAEEAGLMPEIGAWILAEACREAAAWPAH-----LTVAVNVSATQLR 526

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                + ++  ++ +   P R+++  +E+ V+ N E +  LL RLR +G+ + LDDFGT 
Sbjct: 527 SALFIDAVERALAASGLPPHRLEVEITETAVLQNRELALSLLQRLRAMGVMIALDDFGTG 586

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LS++   P   +K + S + G     +  AI+R+II +++++   + A+ +  E   
Sbjct: 587 YSSLSFVHTFPLTRLKIDRSFVQGLGRDPQSTAIVRAIIGLSRSLRLAVTAEGVETEEQH 646

Query: 925 KEL-TRMGCDYIQDSHVASP-LGF 946
           + L    G D  Q   +  P L  
Sbjct: 647 RLLARERGLDL-QGYLLGRPDLPA 669



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L V G  D  ++        V          G  +  + G   ++  +    DR    
Sbjct: 13  YRLLVQGVTDYAIYMLSTDGLVVNWNAGAQRANGYTAEEIIGH--SFAGFYTREDRAAGL 70

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +     R GR + E      D    W  + I  + +  G  + +  I  D TE++ S
Sbjct: 71  PGRNLETARREGRFEAEGWRLRKDGSRFWAHVVIDAIHDDEGRFIGFAKITRDNTEKRAS 130

Query: 526 LEGILCNAFQDNL 538
              +  +A  DNL
Sbjct: 131 AVKL--DAALDNL 141


>gi|291618882|ref|YP_003521624.1| YdcR [Pantoea ananatis LMG 20103]
 gi|291153912|gb|ADD78496.1| YdcR [Pantoea ananatis LMG 20103]
          Length = 1231

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 147/709 (20%), Positives = 286/709 (40%), Gaps = 78/709 (11%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--- 341
           +  S +  +   F        V  S  ++ L  ++       I      +   + +    
Sbjct: 11  VVISVLVAMLASFTALDMAGRVATSTGKVALVWLLGGGFAMGIGIWAMHFIGMLSMDLDM 70

Query: 342 -------PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-LAT 393
                     +   I       A+      ++  P L GG   IV+  G   + +  +A 
Sbjct: 71  MMSYDARLTALSAGIAVCASIFALWLVCHGELPLPRLAGGA--IVLGSGIVAMHYTGMAA 128

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQGI                  W W ++   +     +A +              WL
Sbjct: 129 LMLSQGIV---------------WNWGWVLISVIIALAASVAAL--------------WL 159

Query: 454 PYIHINDRDNFRTILDSFVG----------YRRGRLQYEF----RVRAADNQFHWMIIRI 499
            +      +     L               +  G +  EF        A    +W+ + +
Sbjct: 160 AFKLREGHEGRVATLRVCASVVMGAAIAGMHYTGMMAAEFPAGSHSMDAGVNSNWLAMVV 219

Query: 500 RPMSNSNGDILRYIGIANDITEQKKS------------LEGILCNAFQDNLTGIPNRQSF 547
             ++ +   IL    + + +  + ++               +   A  DNLT +PNR   
Sbjct: 220 TVVTLA---ILGITLLVSMLDARMQARTSILASSLAEANRELAQLALHDNLTRLPNRILL 276

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            DRL   ++ +   +  +  +M +D+D +K +ND  G  +GD +L+S+T R+ E +K   
Sbjct: 277 EDRLEQAINKANR-ECSQFALMFMDLDGFKAVNDAFGHHIGDSLLISVTERMSEQMKGYY 335

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            LARL G+ F +++         A  A  + K+I  P ++   ++ V+ SIG   +    
Sbjct: 336 TLARLGGDEFVLLIE-ITEPNDAAAVADQLVKAIDRPFSISRYDLVVSLSIGIVVYPGDG 394

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYH 725
               E++ NA+ AMYH K+ G N    F+ S       ++ +  DL  A++N EL L Y 
Sbjct: 395 EDERELMFNADAAMYHTKNNGRNGYTFFQPSMNILAQSQLQLNNDLWHALDNDELRLYYQ 454

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P        I+G EAL++W HP+ G +S   F+ +AE+  MI  I  +++    R +  W
Sbjct: 455 PKFCAPHGPILGFEALLRWQHPRHGLLSPDCFLPMAEKTGMIVNIGNWVINEACRQLHQW 514

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q   P   + +N+++     + L + ++  ++      +++ L  +E+  M NP+ S 
Sbjct: 515 HLQ-GHPEWSVAVNLSAMQFEQSNLVDTVKQALALHHIPAAQLTLEVTETTAMRNPDDSV 573

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSII 903
            +L  L ++G+  ++DDFGT  S L YL  +P   +K + + +       +   I+ +I+
Sbjct: 574 RILTELTELGVKASIDDFGTGYSSLLYLKRLPASELKIDRAFVNELQHQSEDATIVSAIV 633

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +A+++   ++A+ +        LT +GC+ +Q   +  P   + + + 
Sbjct: 634 ALAQSLHLKVVAEGVETPEQQAFLTDLGCNTLQGYLLGRPFHRSGLKRW 682


>gi|258620328|ref|ZP_05715366.1| Hypothetical signaling protein [Vibrio mimicus VM573]
 gi|258624699|ref|ZP_05719633.1| Hypothetical signaling protein [Vibrio mimicus VM603]
 gi|258582986|gb|EEW07801.1| Hypothetical signaling protein [Vibrio mimicus VM603]
 gi|258587207|gb|EEW11918.1| Hypothetical signaling protein [Vibrio mimicus VM573]
          Length = 685

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 226/458 (49%), Gaps = 10/458 (2%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P    + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  +  + 
Sbjct: 209 PRLTQDDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLKKLSDAITTAQ 268

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            + +   T+  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +
Sbjct: 269 -NSHTTGTLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAV 327

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++    +  K  + A  +   I+ P  + + ++  T SIG + + S  I++ ++L+ A+ 
Sbjct: 328 LIPYL-SPNKAEEVAKQLLTLISNPYTIDDHQLYCTVSIGISIFPSVGISNIDVLRQADT 386

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+   +L L Y P +      IVG
Sbjct: 387 ALYRAKAGGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQHQLELYYQPQVDEQHN-IVG 445

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  
Sbjct: 446 VEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYSQWKKQGILPPHFRR 505

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+          E +   + +   +   I+L  +ES+++ N E +   + +L++  
Sbjct: 506 LAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAMQKMAQLKESH 565

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           IS+++DDFGT  S L YL ++  D +K + S ++     +   AI+ +I+ +A+ +   +
Sbjct: 566 ISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVSQLHLDDNDQAIVDTILAIARKLNLEV 625

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IA+ +    ++  L ++GC+  Q      PL    I +
Sbjct: 626 IAEGVEDTSELAALKQLGCNQFQGYLFDKPLRAEDIAQ 663


>gi|254234314|ref|ZP_04927637.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126166245|gb|EAZ51756.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 1120

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/582 (20%), Positives = 239/582 (41%), Gaps = 13/582 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      ++ +  + ER  + +   GD V   D         P    + G    
Sbjct: 534  IGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQ 593

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRP 501
               G         +  +  +   + +   +   R     +   + +   + H +     P
Sbjct: 594  DAIGAPHELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAP 653

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G+I+  + +  ++T+ +     +  +A  D LTG+ NR  F + L   L  +   
Sbjct: 654  VRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQER 713

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +  ID+D++K +ND  G A GD +L  L+R + +  +  D LARL G+ FG++L
Sbjct: 714  A-TQHALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLL 772

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + +      +  + +  ++      R   V ASIG  + T++  ++SE++  A++A 
Sbjct: 773  FDCDLAEAEQVASKLIEQICSVRFPWEGRLYDVGASIGITALTATSRSTSELMSQADVAC 832

Query: 682  YHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-- 735
            Y AKH G N V  ++        +   +++   L  A+EN    L    I+ +       
Sbjct: 833  YAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVGPRRDGD 892

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               E L++   P         F+  AE   ++ +I+ +++     +  +    A +  + 
Sbjct: 893  RHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEALINFGA--RIAAVEGLS 950

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I IN++   L D      +   I  +   P R+    +E+ +M     +  ++ +LR +G
Sbjct: 951  IGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVASRIVAKLRDLG 1010

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
              + LDDFG+  S  +YL     D +K +GS +          AI+ SI  +A  +    
Sbjct: 1011 CKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVT 1070

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +     +  L R+G D+ Q   V  P  F ++L  L+ 
Sbjct: 1071 VAEFVESREILDHLARLGVDFAQGYAVGRPQPFATVLDQLRS 1112



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V     T ++ + +            ER  LA       +W+WD+ R+R+     +  + 
Sbjct: 401 VAQYFVTQVEDIDSRKRAELERERLAERIKLATDAGQIGIWEWDLARNRLHWDFRMFDLY 460

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+ SG     +  W   +H  D D     L+  V   + +   EFR+   + +   +   
Sbjct: 461 GIRSGPGETTVEQWKASLHAEDHDRVLRELERAVSGLQ-KFDCEFRIVRPNREVRHLRAI 519

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                + +   +R IGI +DITE +   E + 
Sbjct: 520 ATLTRDEDNRPVRMIGINSDITEIRTLAETLH 551



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 106/363 (29%), Gaps = 18/363 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF--AMAWVVLGYI 232
           LW    +     S  ++  +++ +  +   F    +   R           +   V   +
Sbjct: 82  LWMSAAFLPANLSEAIFAAMLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVL 141

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
              FG        P      +   +   L+   +        W   HA  G         
Sbjct: 142 VSVFGMGRF----PEMWARWYVGDAMGMLALLPLCMASNLAAWR--HALSGRAGVDNAML 195

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           + +   +SF             L  +++      ++         +  +    +  +  +
Sbjct: 196 LLVTLVISFVALTRLPYAFIYVLLPLLVAAASTSVFGTA-----LIGCLNTCFIAVLIAL 250

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
           G+++  + +         L   L LI   +   +++    +      +     +   A+ 
Sbjct: 251 GVFLPESSQQRFGEPLLYLPMALTLIPAFLVSVIME---RSRREQHQVAIGEAQFRGAME 307

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            S   +    +          +  +LG ++  +     ++    +++D +    ++   +
Sbjct: 308 FSAIGMALVSLEGRLFKVNEALCRMLGYSAERLG--ELSFQEITYVDDLELDLDLVRDLL 365

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R    Q E R    D +  W  I +  + +  G    ++    DI  +K++       
Sbjct: 366 AGRINSYQMEKRYLRQDGETFWARISVSLVRDEEGVAQYFVTQVEDIDSRKRAELERERL 425

Query: 533 AFQ 535
           A +
Sbjct: 426 AER 428


>gi|209884253|ref|YP_002288110.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
 gi|209872449|gb|ACI92245.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
          Length = 751

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 135/608 (22%), Positives = 268/608 (44%), Gaps = 21/608 (3%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            MA    +D       +    V++      +  +        SQ + S      + +   
Sbjct: 138 SMAPEGYIDVLPDGRRIFVKKVMLASGGLVSTHEDHTEQDKLSQELKSTKRFLEMVLDNI 197

Query: 415 GDIVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
              V    +     V       TIL     ++ G         +      F    D    
Sbjct: 198 PSAVMVKRVDDGKFVLANRAAETILNRRREAVIGQTVMEA---YPEAAAKFVLQRDDGAI 254

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            + G +  E  +   +        R   +S+ +G     I  ++DIT+++++   +   A
Sbjct: 255 RQGGLVTEEHPIPTDNG-LRLFATRRVTVSDESGAPQYLIKTSDDITDRRETESRMAHMA 313

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+PNR +FL  L  ++D +  D +    V+ +D+ ++++INDVLG   GD +L+
Sbjct: 314 YHDGLTGMPNRAAFLQSLEQLID-ACGDTDEEFAVLSVDLRRFREINDVLGHETGDKLLI 372

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+ +      ++ARL G+ +GII+            A  + + I+    +  + + 
Sbjct: 373 EVAQRLEKAAGSG-VVARLGGDEYGIIIDG-KQPEAARKLAEQVSEDISREFVIDGKTLR 430

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDL 711
           V  ++G + +  +    + +L NA+ A+  AK R  G        +     DR  +  DL
Sbjct: 431 VGVTVGVSIFPRNGKNGAALLANADAALSRAKARAGGSIVFYEAEMDQQIRDRRALHHDL 490

Query: 712 CLAVENSELYLVYHPI----IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             A+   EL L Y P+      +  +++ G EAL +W HP  G +  S+F+ +AEE  +I
Sbjct: 491 YNALSKGELSLHYQPLARARHSVSGDDVTGFEALARWIHPTRGFVPPSDFIPLAEESGLI 550

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L    R+  SW        + I +N++    +  +L   + +++ +T  +P R
Sbjct: 551 VEMGEWILREACREAASWPRH-----LQIAVNLSPAQFMHGDLVGLVHSILLETGLTPGR 605

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E V++ + +R   LL RL+ +G+ + +DDFG+  S L+YL   PFD +K + + 
Sbjct: 606 LELEITEGVLIDDFDRGLSLLRRLKALGVRIAMDDFGSGYSSLTYLQAFPFDKIKIDRTF 665

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      ++  AI+RS+I +   +  +I+A+ +  +  +  L    CD++Q   +  P  
Sbjct: 666 VMNLGRNQQSSAIIRSVIGLGHGLGISIVAEGVETQDQLNFLAVEACDHVQGYLLGKPAP 725

Query: 946 FNSILKLL 953
             +    +
Sbjct: 726 IPTYDAWV 733


>gi|218778795|ref|YP_002430113.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760179|gb|ACL02645.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 858

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 113/438 (25%), Positives = 225/438 (51%), Gaps = 10/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +  E ++  A  D+LTG+ NR +  + L   L+ +   + +   ++ ID+D++K++N
Sbjct: 416 EKVRLTETLVYQARHDDLTGLANRGALREWLERSLNAAKRYEEM-LALLYIDLDRFKQVN 474

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L  +  R+  +++  DILAR+ G+ F +      +          +R+ 
Sbjct: 475 DSLGHVVGDQLLKEVVSRLLRIVRDSDILARMGGDEFVLAASRLESKEDALGMGRRIRQI 534

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
              P  + + E+ + ASIG + +      + +++++A+ AMY+AK RGGN +  F  ++ 
Sbjct: 535 FREPYRIQDHELYLDASIGISFFPEDAQDAGKLIRHADTAMYYAKIRGGNRLAEFEPQMK 594

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ I+ DL  A+EN E  L Y P   L  + ++G EALI+W+HP+ G I   +F+
Sbjct: 595 MAVLERLEIENDLRKAIENKEFELFYQPQYELASKRLIGFEALIRWNHPELGRIPPLKFI 654

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  +++         W          + +N++S    D    + + + +
Sbjct: 655 PLAEETGLIIPIGEWVVHEACAQNARWAKA-GYGSFKVSVNVSSVQFADEGFLDVLVSAL 713

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K+      +++  +ES+++ + +    +L  ++ +G +  +DDFGT  S +SYL  +P 
Sbjct: 714 NKSGMESHHLEIELTESILVKDVKSIANMLSGVKSLGATTAIDDFGTGYSSMSYLHDLPI 773

Query: 879 DTVKFNGSLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           D +K + S +  +      +E++  +L  I+ M+ ++  T+IA+    +     L ++GC
Sbjct: 774 DCLKIDRSFVINTGDDTFASERKRNLLSKIVEMSHDLGLTVIAEGFDNKQQFDYLVKIGC 833

Query: 933 DYIQDSHVASPLGFNSIL 950
           D  Q  ++  P+    I 
Sbjct: 834 DVGQGFYLGVPMSAPEIE 851



 Score = 78.5 bits (192), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 1/138 (0%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +++ L T      +    E+   A   +    W++         + +   + G+  G  
Sbjct: 119 RLRYALDTNQLLAKLRDSEEKIYHAQKAAHMGTWEYVPESKTFILSKNSHQVFGIRYGDE 178

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                ++L   H  DR+ F  +L+  V  R    +   R+   D    ++  ++  + N+
Sbjct: 179 RVSRDHFLDVFHPEDREEFSNLLNQAVT-RHFPFRLVHRIMRFDGSVRFIQQQVSIVRNN 237

Query: 506 NGDILRYIGIANDITEQK 523
              +   +G A D+T+Q+
Sbjct: 238 ITGVKTILGTALDVTDQR 255


>gi|15596378|ref|NP_249872.1| sensor protein [Pseudomonas aeruginosa PAO1]
 gi|9947106|gb|AAG04570.1|AE004548_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 1120

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/582 (20%), Positives = 239/582 (41%), Gaps = 13/582 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      ++ +  + ER  + +   GD V   D         P    + G    
Sbjct: 534  IGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQ 593

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRP 501
               G         +  +  +   + +   +   R     +   + +   + H +     P
Sbjct: 594  DAIGAPHELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAP 653

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G+I+  + +  ++T+ +     +  +A  D LTG+ NR  F + L   L  +   
Sbjct: 654  VRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQER 713

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +  ID+D++K +ND  G A GD +L  L+R + +  +  D LARL G+ FG++L
Sbjct: 714  A-TQHALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLL 772

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + +      +  + +  ++      R   V ASIG  + T++  ++SE++  A++A 
Sbjct: 773  FDCDLAEAEQVASKLIEQICSVRFPWEGRLYDVGASIGITALTATSRSTSELMSQADVAC 832

Query: 682  YHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-- 735
            Y AKH G N V  ++        +   +++   L  A+EN    L    I+ +       
Sbjct: 833  YAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVGPRRDGD 892

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               E L++   P         F+  AE   ++ +I+ +++     +  +    A +  + 
Sbjct: 893  RHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEALINFGA--RIAAVEGLS 950

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I IN++   L D      +   I  +   P R+    +E+ +M     +  ++ +LR +G
Sbjct: 951  IGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVASRIVAKLRDLG 1010

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
              + LDDFG+  S  +YL     D +K +GS +          AI+ SI  +A  +    
Sbjct: 1011 CKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVT 1070

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +     +  L R+G D+ Q   V  P  F ++L  L+ 
Sbjct: 1071 VAEFVESREILDHLARLGVDFAQGYAVGRPQPFATVLDQLRS 1112



 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 1/152 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V     T ++ + +            ER  LA       +W+WD+ R+R+     +  + 
Sbjct: 401 VAQYFVTQVEDIDSRKRAELERERLAERIKLATDAGQIGIWEWDLARNRLHWDFRMFDLY 460

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+ SG     +  W   +H  D D     L+  V   + +   EFR+   + +   +   
Sbjct: 461 GIRSGPGETTVEQWKASLHAEDHDRVLRELERAVSGLQ-KFDCEFRIVRPNREVRHLRAI 519

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                +++   +R IGI +DITE +   E + 
Sbjct: 520 ATLTRDADNRPVRMIGINSDITEIRTLAETLH 551



 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 106/363 (29%), Gaps = 18/363 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF--AMAWVVLGYI 232
           LW    +     S  ++  +++ +  +   F    +   R           +   V   +
Sbjct: 82  LWMSAAFLPANLSEAIFAAMLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVL 141

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
              FG        P      +   +   L+   +        W   HA  G         
Sbjct: 142 VSVFGMGRF----PEMWARWYVGDAMGMLALLPLCMASNLAAWR--HALSGRAGVDNAML 195

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           + +   +SF             L  +++      ++         +  +    +  +  +
Sbjct: 196 LLVTLVISFVALTRLPYAFIYVLLPLLVAAASTSVFGTA-----LIGCLNTCFIAVLIAL 250

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
           G+++  + +         L   L LI   +   +++    +      +     +   A+ 
Sbjct: 251 GVFLPESSQQRFGEPLLYLPMALTLIPAFLVSVIME---RSRREQHQVAIGEAQFRGAME 307

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            S   +    +          +  +LG ++  +     ++    +++D +    ++   +
Sbjct: 308 FSAIGMALVSLEGRLFKVNEALCRMLGYSAERLG--ELSFQEITYVDDLELDLDLVRDLL 365

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R    Q E R    D +  W  I +  + +  G    ++    DI  +K++       
Sbjct: 366 AGRINSYQMEKRYLRQDGETFWARISVSLVRDEEGVAQYFVTQVEDIDSRKRAELERERL 425

Query: 533 AFQ 535
           A +
Sbjct: 426 AER 428


>gi|27381658|ref|NP_773187.1| hypothetical protein bll6547 [Bradyrhizobium japonicum USDA 110]
 gi|27354827|dbj|BAC51812.1| bll6547 [Bradyrhizobium japonicum USDA 110]
          Length = 830

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/431 (28%), Positives = 210/431 (48%), Gaps = 11/431 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +L  A  D LTG+PNR  FL RL   L+    D     +++++D+D++K +ND LG
Sbjct: 393 ANRRVLELAQTDILTGLPNRAFFLARLDD-LNGQLNDGGSTFSILMLDLDRFKNVNDSLG 451

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI-ADFAIAMRKSIAM 643
              GD +L  + +R+   L+  D+LARL G+ F II     +      + A  + K +A 
Sbjct: 452 HGAGDALLRQVAQRLKSALRATDVLARLGGDEFAIIQEGAEDQRTCSTELAARIAKLVAE 511

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L    + +  SIG A          ++LK A+LA+Y +K  G N    +  +     
Sbjct: 512 PFLLPGHRVEIGTSIGIAIAPDHGSDQEQLLKKADLALYRSKSAGRNCFTIYDEAMSAEL 571

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ DL  A+   +L + Y P +     E  G EAL++W HP  G I   +F+ +A
Sbjct: 572 EARNTLEGDLRDAIALCQLEVHYQPFVDAHSSERRGFEALVRWRHPSRGLIPPDQFIPLA 631

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  F+L R   D   W        + + +N++     + EL E + A ++ +
Sbjct: 632 EETGLIVPLGEFVLRRACEDAAGWPS-----GLAVAVNLSPIQFKEAELFEMICAALADS 686

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R+++  +ESV++     +   + RL+++GI L LDDFGT  S LSYL   PFD +
Sbjct: 687 GLPPERLEIEITESVLLERGVENLAFMERLKQLGIELALDDFGTGYSSLSYLTTFPFDKI 746

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   T   +  AI+ SI+ +A+ ++ ++ A+ +    + + L  +G ++ Q   
Sbjct: 747 KIDKSFIRNLTHQPRSSAIIASIVTLARGLDMSVTAEGVETCEEFERLKALGVNFAQGYL 806

Query: 940 VASPLGFNSIL 950
              P     I 
Sbjct: 807 FGRPQPVGQIA 817


>gi|262163927|ref|ZP_06031666.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM223]
 gi|262027455|gb|EEY46121.1| C-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM223]
          Length = 685

 Score =  456 bits (1173), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 227/458 (49%), Gaps = 10/458 (2%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P    + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  +  + 
Sbjct: 209 PRLTQDDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLKKLSDAITTAQ 268

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            + +   T+  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +
Sbjct: 269 -NSHTTGTLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAV 327

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++    +  K  + A  +   I+ P  + + ++  T SIG + + S  I++ ++L+ A+ 
Sbjct: 328 LIPYL-SPNKAEEVAKQLLTLISNPYTIDDHQLYCTVSIGISIFPSVGISNIDVLRQADT 386

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+   +L L Y P +      IVG
Sbjct: 387 ALYRAKAGGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQHQLELYYQPQVDEQHN-IVG 445

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HPK G +  S FM IAEE   I  I  +++E+       W+ Q  +PP F  
Sbjct: 446 VEALIRWNHPKRGLLPPSVFMPIAEETGQILPIGNWIIEQACYQYSQWKKQGILPPHFRR 505

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+          E +   + +   +   I+L  +ES+++ N E +   + +L++  
Sbjct: 506 LAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAMQKMAQLKESH 565

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           IS+++DDFGT  S L YL ++  D +K + S ++     +   AI+ +I+ +A+ +   +
Sbjct: 566 ISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVSQLHLDDNDQAIVDTILAIARKLNLEV 625

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IA+ +    ++  L ++GC+  Q      PL    I +
Sbjct: 626 IAEGVEDTSELAALKQLGCNQFQGYLFDKPLRAEDIAQ 663


>gi|325284705|ref|YP_004264168.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324316194|gb|ADY27308.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 819

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 211/439 (48%), Gaps = 13/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + + +   +   A  D LTG+ NR  F   +   L+           ++ ID+D++K++N
Sbjct: 374 QLQTAQHTLAYRATHDALTGLANRAYFQAEVERELEA-----GHSFGLLFIDLDRFKQVN 428

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L ++ R++ ++L+  D++AR+ G+ F +IL + + S      A  +   
Sbjct: 429 DTLGHDTGDQLLKAVARQLKQVLRPNDLVARMGGDEFTVILRNLHTSYDAEVMAHKVLNR 488

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +A P ++ E  + VTASIG A         S + ++A++AMY AK  G N V +F+  + 
Sbjct: 489 LAEPFHVAENTLYVTASIGMAVAPQDGEDVSTLQRHADIAMYRAKREGKNSVRAFQPLMG 548

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++RV  + DL LA+    L L Y          + G EAL++W HP  G +   +F+
Sbjct: 549 IEAAERVSTERDLRLALTQRHLVLHYQSQFDAQSGRLTGFEALVRWQHPTHGLLYPGKFI 608

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I  +  ++L    R    W          + +N+++   +D      +QA +
Sbjct: 609 EIAEDSGLIVPMGEWVLNEACRQAAVWGANG--QGFTVSVNVSALQFMDPVFLLKVQAAL 666

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +   P  + L  +ESV++ N ER+   L  LR IG+ L LDDFGT  S L  L ++  
Sbjct: 667 DSSGLKPECLILELTESVLLENRERALKQLTHLRDIGVRLALDDFGTGYSSLGLLQHLQG 726

Query: 879 DTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           D +K + S +            A++  +I +A ++   +IA+ +  E   + L  + CD 
Sbjct: 727 DILKIDSSFVRGGQIDVAGPGRALIEFLISLAHSLGMCVIAEGVETEEQYQALRSLDCDR 786

Query: 935 IQDSHVASPLGFNSILKLL 953
           IQ   +  P     I K L
Sbjct: 787 IQGFLLGRPEPAELIEKRL 805


>gi|297625105|ref|YP_003706539.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
            17093]
 gi|297166285|gb|ADI15996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Truepera radiovictrix DSM 17093]
          Length = 1033

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 218/439 (49%), Gaps = 20/439 (4%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E ++ L+ +  NA  D LTG+ NR +F +RL + ++ +A        V+ +D+D++K++N
Sbjct: 567  EHRRLLDRLSYNARHDALTGLLNRSAFEERLRSAVERAAKS-GATLAVLFLDLDRFKRVN 625

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA--MR 638
            D LG A GD +L   T R+   +     LAR+ G+ F  +L +   +       +A  + 
Sbjct: 626  DTLGHAAGDALLKLATARLRACVGE-AALARVGGDEFLCLLEAPRGAAAGLAAGVASCIV 684

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++   P  L  R++ +  ++G +++ S    ++ +++NA+ AMY  K  G + V  F  +
Sbjct: 685  EAFDAPFTLGARDVFLGITVGVSTFPSDGTDAATLIRNADTAMYQGKVAGKHTVVFFSAA 744

Query: 699  SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               + +    ++ DL  A+   E  L+Y P + L    + G+EAL++W HP+ G I+  +
Sbjct: 745  VSATMQRQARLESDLRRALARGEFRLLYQPQVELRTGALTGVEALLRWQHPELGWIAPQD 804

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ +AEE  +I  +  ++L+   R    WR Q  + P+ + +N+++      +    +  
Sbjct: 805  FIPVAEESGLIVPLGAWILQEACRQGARWRAQRGVHPLRVAVNVSALQFGHADFVGVVLR 864

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +  +   P  + L  +ESVV+G+       +  L+++G+ L+LDDFGT  S L+YL ++
Sbjct: 865  ALQTSGLPPELLTLEITESVVIGDLGAVTERIAELKRLGVRLSLDDFGTGYSSLAYLRHL 924

Query: 877  PFDTVKFNGSLM--------------TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
            P D VK +   +                   +  A++++I+ +A  +E  ++A+ +    
Sbjct: 925  PIDEVKIDKVFLPPLSAPDTSHDTTRARDAAEDRAMVQAIVSLAHALELEVVAEGVEDAA 984

Query: 923  DIKELTRMGCDYIQDSHVA 941
             +  L   GCD  Q     
Sbjct: 985  QLAFLRDTGCDGAQGYLFG 1003



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 113/400 (28%), Gaps = 57/400 (14%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
               +      +  + R  +  +     G    +        +  V  +    +   +  
Sbjct: 234 ARALLGATFDEVITSGRAASTELFYPPFGEWFEVRAYPLDGGLSVVFQSVTERRRAAAQL 293

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
             Q+  +      V   D     V        + G  S  + G       ++        
Sbjct: 294 AFQASLLERVQSAVVATDPAGRVVYWNRFAEALYGFCSAEVVGRPLA--RFLFPGSARAA 351

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                     R G+ + E  ++         ++ +  + +  G +L +IG A DI+E+K+
Sbjct: 352 ARAATEEAK-RSGQWRGELTLKRRGGSRFPALVTVSALRDEGGALLGFIGGALDISERKQ 410

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDR------LTTILDL-----SATDDNLRPTVMVIDI 573
           +                  R+  L+       L   L              R  V ++  
Sbjct: 411 AERLERD------------RRHILEMVVRNCPLDETLGKLAELVERQHPGARCAVHLLR- 457

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGEL-----LKFPDILARLSGNRFGIILISENNSL 628
                         G  +L +   R+ +      +         +     +++  +  + 
Sbjct: 458 -------------AG-RLLPAAGYRLTDERQGLPVGPQAGACGAAAALGDVVICEDAQTD 503

Query: 629 ------KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML-KNAELAM 681
                 +    A  +R   + PI   ERE+  T S+ + + T     +  +L   A+LA 
Sbjct: 504 PRWGRYRELARAHRLRSVWSQPILSGEREVLGTLSVYYDALTPPTPEALALLDDKAKLAA 563

Query: 682 YHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCLAVEN 717
              +HR      S+         +      +E L  AVE 
Sbjct: 564 VAIEHRRLLDRLSYNARHDALTGLLNRSAFEERLRSAVER 603



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 20/202 (9%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G  +      A ++         + I        +  +    L  +  L+        L 
Sbjct: 115 GAPQLRFYAGAPLVTPDGVALGTLCIFDPAPRPPLSASERATLEDLAALV-----IDELE 169

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +Q +  +  R    +    + ++  D               L  +S  + G  R W
Sbjct: 170 LRRVAQALEREAARTEAILSSITEALYTLDGEGRFRYLNAQAERFLRRSSAELLGK-RIW 228

Query: 453 LPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             +     R       D  +   R    +  +       +  W  +R  P+   +G    
Sbjct: 229 DEF--PGARALLGATFDEVITSGRAASTELFY---PPFGE--WFEVRAYPL---DG---G 275

Query: 512 YIGIANDITEQKKSLEGILCNA 533
              +   +TE++++   +   A
Sbjct: 276 LSVVFQSVTERRRAAAQLAFQA 297


>gi|229590216|ref|YP_002872335.1| putative EAL/GGDEF domain-containing signaling protein [Pseudomonas
           fluorescens SBW25]
 gi|229362082|emb|CAY48984.1| putative EAL/GGDEF domain signalling protein [Pseudomonas
           fluorescens SBW25]
          Length = 698

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 145/694 (20%), Positives = 272/694 (39%), Gaps = 37/694 (5%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY---- 334
                 +  S    I   +        +  +  R     I        +      +    
Sbjct: 5   SYSPSLVVISLFVAILASYTALDLSGRIATAKGRGVYLWITGGAMAMGVGVWSMHFIGML 64

Query: 335 ----ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                 A+        + +    L       L +    PA    L  +++  G   + + 
Sbjct: 65  ALRLPFALGFDVGITALSLLIAVLSSGFALWLVSQPRLPAWQLALGALIMGTGIASMHYT 124

Query: 391 -LATGYFSQGIFSDGER----QSLAVLGSGDIVWD-WDIVRDRVTTTPD---IATILGLA 441
            +A    + GI  D         +AV  SG  +W  +++ R+           A ++G A
Sbjct: 125 GMAAMRMTPGIDYDPALFGASLLIAVAASGAALWIAYNLRRNTPYVRLARGGAAVVMGFA 184

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              MH        +    D       L+   G     L               ++     
Sbjct: 185 IVGMHYTGMAAARF---ADESFCGAALNGLSGKGLDNLVLV--------TTLAVLAIALL 233

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            S  +  +     +  D     ++ + +   A  D LTG+PNR    DR+   +      
Sbjct: 234 TSLLDARLEARTAVLAD--SLTQANQELTHLALHDMLTGLPNRTLLADRIQQAMQAVKEQ 291

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +M ID+D +K +ND  G  +GD +L  +  R+ E L+  D LAR+ G+ F  +L
Sbjct: 292 GGC-FALMFIDLDGFKPVNDAFGHHMGDQLLSEVGVRLREDLRSQDTLARIGGDEFV-LL 349

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +           A      I     + E E+ ++AS+G A +  +  +  E+L NA+ AM
Sbjct: 350 VQLTQPDDALGLAERQVVLINRAFRVAEHELKISASVGIAMFPGNGNSPQELLMNADAAM 409

Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           YHAK  G N    F   +++    ++ + +DL  AVE  +  L Y P    +    VG E
Sbjct: 410 YHAKGMGKNGYSFFDASMNTNARKQLQLLQDLRNAVEQQQFRLYYQPKFDALSGIPVGAE 469

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP+ G +  + F+ +AE+  +I  I  ++L    R +  W  +       I +N
Sbjct: 470 ALLRWEHPQQGLLLPAMFIDMAEKTGLIIPIGEWVLNEACRQMSLWYAE-GYEHWRIAVN 528

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++       L + + A + +     + + L  +E+  M + + S  +L +L  +G+ L+
Sbjct: 529 LSALQFCHVGLVKSVAAALERHQLPANSLTLEITETTAMSDADASMTVLQQLSDMGVDLS 588

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L YL  +P + +K +   +          AI+ +I+ + + +   I+A+ 
Sbjct: 589 IDDFGTGYSSLMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEG 648

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  ++    LTR+GC+ +Q   +  PL  +  + 
Sbjct: 649 VETDVQQSFLTRLGCNSLQGYLLGHPLPADVFMA 682


>gi|229530464|ref|ZP_04419852.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
 gi|229332237|gb|EEN97725.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           12129(1)]
          Length = 685

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 222/453 (49%), Gaps = 10/453 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  ++ +  + + 
Sbjct: 214 DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQ-NSHS 272

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +++   
Sbjct: 273 TGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL 332

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  K  + A  +   I+ P  + + +   T SIG + + S   ++ ++L+ A+ A+Y A
Sbjct: 333 -SPAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRA 391

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +           + I++ L  A+   +L L Y P +      I+G+EALI
Sbjct: 392 KASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALI 450

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINI 800
           +W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  + INI
Sbjct: 451 RWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINI 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          E +   + +   +   I+L  +ES+++ N E +   + +L++  IS+++
Sbjct: 511 SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +IA+ +
Sbjct: 571 DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++  L ++GC+  Q      PL    I +
Sbjct: 631 EDTSELAALKKLGCNQFQGYLFDKPLRAEEIAQ 663


>gi|146307450|ref|YP_001187915.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145575651|gb|ABP85183.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 683

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 207/430 (48%), Gaps = 7/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LT +PNR    DR+   +     +      ++ +D+D +K +ND  
Sbjct: 254 RANAELTELALHDGLTKLPNRLLLEDRIGQSILKVQRNGG-HFALLFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++ +R+   L+  D LAR+ G+ F  +L     +   A  A  +   ++ 
Sbjct: 313 GHHIGDQLLVAVAQRLRANLRAQDSLARIGGDEFV-LLAELRQADDAASVAGQVVSLLSQ 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + E E+ V+ S+G A +        E+L NA+ AMYHAK  G N    F   +++  
Sbjct: 372 PFRVDEHELRVSTSVGIAVYPGDGSNQQELLINADAAMYHAKGLGKNGYSFFERSMNTNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL  A+E  E  L Y P      E ++G EAL++W HP+ G ++   F+ +A
Sbjct: 432 RQQLQLLHDLRAALERGEFLLYYQPKFATGSERMIGAEALLRWQHPQQGLLTPDRFIGLA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I AI  ++L    R +  W +Q       + +N+++      EL E ++  + + 
Sbjct: 492 EKTGLIIAIGDWVLNEACRQMRLWYEQGRR-DWRVAVNLSALQFCHGELVESVRRTLDRH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +ES  M +   S  +L +L  +G+ + +DDFGT  S L YL  +P + +
Sbjct: 551 GLPANCLTLEITESTAMHDVNASLAILEQLAGMGVDIAIDDFGTGYSSLLYLKRLPANEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + ++  I+A+ +        LT +GCD +Q   
Sbjct: 611 KIDRGFVRDLEHDGDDAAIVSAIVALGQALDLRIVAEGVETRQQQAFLTELGCDSLQGYL 670

Query: 940 VASPLGFNSI 949
           +  PL    +
Sbjct: 671 LGQPLPPEHL 680


>gi|150398003|ref|YP_001328470.1| PAS/PAC and Chase sensor-containing diguanylate
           cyclase/phosphodiesterase [Sinorhizobium medicae WSM419]
 gi|150029518|gb|ABR61635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Sinorhizobium medicae WSM419]
          Length = 878

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 143/621 (23%), Positives = 270/621 (43%), Gaps = 43/621 (6%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWD 422
           I  AL G +++  +++   ++    A     +      +    R  +A+  S   VW+ D
Sbjct: 265 ILIALGGMMIVAPMIVAGRLMAERQANFRALRQSKDQLQELSHRLRIALDTSMIGVWELD 324

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
               ++     +  + G+   SMH    +W   +H  D        D+ +         E
Sbjct: 325 ADSGKLLWDSRMRELYGV-GSSMHEVYEDWRNTLHPEDLARAEAEFDAALATGEA-YNTE 382

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---------------------E 521
           FR+R        +         +NG   + +G+  D+T                     E
Sbjct: 383 FRIRLPAGGVRHIRAIGSTYIGTNGS-RKIVGVNWDVTADVETRATLSEAKRLAEAHSAE 441

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKYKKIN 580
            + +   +  NA  D LTG+PNR+ FLD++  +LD S   +   + ++  ID+D++K+IN
Sbjct: 442 LEAARHRMEFNALHDPLTGLPNRR-FLDQI--LLDRSRRVEAGAKISIFHIDLDRFKQIN 498

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G A GD++L      + +  +  D +AR+ G+ F II  S+      A  A  + ++
Sbjct: 499 DTMGHAAGDEILKHAASLLRDNARQDDFVARIGGDEFVIIRASDGADEDAA-MASRVIEA 557

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +++P+   ++E  +  SIG A+ T +    S++L NA++A+Y AK RG N  E+F     
Sbjct: 558 MSVPVRYEDQECRIGVSIGIAAQTDATDDLSQVLVNADIALYEAKRRGRNRQETFTGALK 617

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +         +++   +E +E    + P       +I+G+EAL +WDHP  G +    F+
Sbjct: 618 TAVLQTKQTADEILRGLEQNEFVAHFQPQFCPSSLDIIGVEALARWDHPTKGLLGPHAFL 677

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE++ ++ AI+  +LE+    I  W       P  + +N++   L D  L       +
Sbjct: 678 KTAEDINVVAAIDQKILEQALFQIYRWEANGIYVP-KVSVNLSYPRLRDEGLIAQ----L 732

Query: 819 SKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            K      R+     ES+     +      + R++++GI + +DDFGT  + +  L  + 
Sbjct: 733 EKLSIPEGRLSFELLESISFDENDMMVMSNIRRIKELGIDIEIDDFGTGYASILSLLKLT 792

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  L+     +     ++ SII + K++   +IA+ +      + L  M C  +
Sbjct: 793 PRRLKIDRQLVLPILASPAERRLVASIIDIGKSLGIDVIAEGVETLEHARILKEMECHGL 852

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A P+  N     + ER
Sbjct: 853 QGYAFARPMNANDFATFVFER 873


>gi|332995066|gb|AEF05121.1| putative signal transduction protein [Alteromonas sp. SN2]
          Length = 946

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 170/962 (17%), Positives = 328/962 (34%), Gaps = 39/962 (4%)

Query: 11  FEKAFLILVLFLLWMVSPSFAIEP-INISSSDRVLDLTSITRIYVNQGEDFQVFTAADID 69
           F  A + L  + L     + A+   + I  S RV  +   +  +V   +           
Sbjct: 4   FFIACITLSTWALSDAIQNSAVASELTIDQSFRVATINESSSFFV-AHKSMTYLDVLHPS 62

Query: 70  GISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI-- 127
                      +  +   W    L N   S +  ++ +    +     +  D  +R I  
Sbjct: 63  SPLTSSIPLDRN--NSRLWISNELRNEGFSTIPLVLNIDRLNINDLQIYLLDGNARIIKS 120

Query: 128 -ISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDT 184
                    FSL +  ++    F +T  P   V  ++ +    L    I LWE    +  
Sbjct: 121 YRYQAGKGDFSLKKPFSAIRLSFSLT--PQENVRLVIGVYDDGLRYFPISLWEKQAIEQY 178

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
             +  +  GI++G+ ++L  +  + Y+  R+          +V+     +  G L+    
Sbjct: 179 DETLLILLGIVLGMLTVLTGYFLLSYLYQRTPARFWLAVTNFVLFALFFMAQGGLATW-- 236

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                         + +S S +    +          V  I    +     +  +S    
Sbjct: 237 --PSLTNASEITFAVLISLSFVTLAKVTHSLFSPIPLVLRILTFALPIGMAIAAVSTSAY 294

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW-----ILIFIWFIGLWMAIT 359
             T  +   +      +     I+   K    + L   AW     +      I    A  
Sbjct: 295 DATRILFAASPFIAAYHIGLAFIFKDKKNLASSRLFAFAWVFVFMLYAVFVKIAFDNAFY 354

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                 II   L   L+ I   +              S+   S           S + ++
Sbjct: 355 TAPIVMIILTLLTLSLLCIGFAVELKEQNVSRLRLSESEATISSLHHFYDLFRNSSEGLY 414

Query: 420 DWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
              +  +  T  P +  + G    +  +         Y +  DRD    +L   + +   
Sbjct: 415 TSTLDGELKTVNPAMCALFGYTDEAKMLAEVKNTKQFYANSEDRD----VLVGELLHSGQ 470

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E +   A+    W  I  +   N +G  L   G   D+TE+K+S   +   A  D+
Sbjct: 471 VAAREIKGMRANGSAFWFSISCQVRENESGSFLY--GSIIDVTEKKQSDSSLQFMATHDS 528

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+ NR+ F   LT  L        + P V+ +D+D++K +ND  G   GD ++  +  
Sbjct: 529 LTGVYNRRQFETTLTARLS---EKSPIPPCVLYLDLDRFKIVNDTSGHKAGDALIKDIAH 585

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + + L    +LAR+SG+ FG+I  ++            +        +   R  ++  S
Sbjct: 586 LLEKSLPNEAMLARISGDEFGVIFENQPEEQAYLQATALLNAVQDYRFSWENRIFSLGVS 645

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCL 713
           IG    T    ++ + +  A+ A Y+AK +G N +  +           + +     +  
Sbjct: 646 IGMVVCTDPDASAEQYICMADAACYYAKEQGRNQIHKYSKDDESMLRYQNELDWVNSIQS 705

Query: 714 AVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A+      L Y P+       +    E L++        +  + F+  AE   M   I+ 
Sbjct: 706 ALSEDRFLLYYQPLRPLSRPNDGYYYEVLLRMKETDGRIVEPAAFLPTAERFEMNVKIDK 765

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++      +    +          IN+    L D +    +     +      +I    
Sbjct: 766 WVIVNTFNWLNEHPEHLAELK-RCSINLNCHSLADRDFKLFVLNAFERYNIPYDKICFEM 824

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
            ESV +   E +   +    ++G S  LDDFG   +   YL ++P D VK +G+ +    
Sbjct: 825 IESVAIIKMEYTIDFMRTFHRLGCSFALDDFGRGFASYGYLKHLPVDIVKIDGTFIKDMR 884

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                +A++ SI  +AK +    + + +  +  + +L  MG D+ Q   VA P   +   
Sbjct: 885 ADPVDVAMVSSIKEVAKALGMQTVGEFVESDATMTQLGNMGIDFAQGYGVAEPALLDDFK 944

Query: 951 KL 952
            L
Sbjct: 945 PL 946


>gi|160877371|ref|YP_001556687.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862893|gb|ABX51427.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
 gi|315269575|gb|ADT96428.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 706

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/556 (22%), Positives = 237/556 (42%), Gaps = 8/556 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S  +  S + V+  D     +     +  I G ++  +      +L     +    
Sbjct: 153 KEILSTTLEESAEAVYITDSDDQILAVNKAMCRICGYSAEQLISKTPEFLEL--KSHHLG 210

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             T   + +  R G  Q E   + +D+         R +   +G     + I +DI+ +K
Sbjct: 211 AETECQTALKQR-GFWQGETWKKRSDSSNFPAWQSSRKIITEDGAHYN-VNIFSDISTKK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A  D LTG+PNR      L T L+   TD      +M +D++ +K IND  
Sbjct: 269 LLETQLTTRAMYDTLTGLPNRFHLKQILNTALEKLKTDPLALGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKDEIQLFAEQILSLFES 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRS 702
           P  +  ++  +  SIG A + +    + +++  A+ AMY AK    + V   + +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDKAGQLISLADTAMYCAKKSLPHLVFYDKAMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +   L  A    +  L Y  I+ L   + +  EAL++W         +++F+ + E
Sbjct: 449 LKLQLINSLRHAHSLKQFTLAYQAIVDLHTNQTIAAEALLRWQKSPTEYYDAADFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I +I  ++LE+       WR         I +N++   L   +  + +   +    
Sbjct: 509 ETGLIVSIGQWVLEQACVQAAQWRAHN-QADFRISVNVSPLQLEHLDFIDQVINALDMAN 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE++RL L R++ +G+S+ +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPAEALILEITESALLRQPEQARLTLNRIKALGVSIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +        E     +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNEVSGQKLCNAIVQLAQALDIHFVAEGIETQQQRDIMTDMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK-LLKER 956
            P   ++  +  L E+
Sbjct: 688 YPSSVDNFTQTFLTEK 703


>gi|323497772|ref|ZP_08102786.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sinaloensis
           DSM 21326]
 gi|323317119|gb|EGA70116.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sinaloensis
           DSM 21326]
          Length = 684

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 224/446 (50%), Gaps = 10/446 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++ +   +   A+ D+LTG+ NR   L  L   +D +    +    +  +D+D++K IN
Sbjct: 231 DREAAEAKLNQLAYYDSLTGLANRSLLLQLLGKEIDRANL-KSESGALFYLDLDRFKTIN 289

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L +++ RI   +K     AR+ G+ F I+L    +S K  + A  +   
Sbjct: 290 DSLGHTIGDHLLKAISMRIEAWVKDDYTAARIGGDEFAILLPH-TSSDKARELAQQLLAL 348

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ P ++ + ++  + S+G A + S   T+ ++L+ A+ A+Y AK  G N    +     
Sbjct: 349 ISNPYSIDDHQLYCSVSVGIAVFPSVGGTNIDVLRQADTALYRAKVGGRNKYMFYEPEMQ 408

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + I++ L  A+   +L L Y P +   + +I+G+EALI+W+HP  G +    FM
Sbjct: 409 AQVESYLEIEKGLHEAINKGQLELYYQPQVN-SEHQIIGVEALIRWNHPDRGVLPPGVFM 467

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINIASKDLLDNELCEGMQA 816
            IAEE   I  I  +++E+      SW+ Q  +P  F  + INI+      +   E +  
Sbjct: 468 PIAEETGQILQIGNWIIEKACYQYASWKKQGILPETFRRLAINISPLQFSQDSFVEHISD 527

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++   S   I+L  +E++++ N E +   + +L++  +  ++DDFGT  S L YL ++
Sbjct: 528 ALTQAGISGEHIELEITENLLLENVENAIQKMVKLKEYDLKTSIDDFGTGYSSLKYLKHL 587

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +T     E   AI+ +II  AK +   +IA+ +    ++  L  +GCD 
Sbjct: 588 AVDVLKIDRSFVTQLHLDESDQAIVDTIIMTAKRLNLEVIAEGVEDCNELNTLKELGCDQ 647

Query: 935 IQDSHVASPLGFNSI-LKLLKERFPL 959
            Q      PL  + +  +  +  +P+
Sbjct: 648 FQGYLFDKPLQASELNERFERNHYPV 673


>gi|294141657|ref|YP_003557635.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328126|dbj|BAJ02857.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 537

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/462 (28%), Positives = 229/462 (49%), Gaps = 14/462 (3%)

Query: 508 DILRYIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            I   + I  ++         + KS   +   AF D LTG+PNR  F ++L   +     
Sbjct: 76  SISFMVIIIRNVKHLNVEIKLRIKSENKLNKLAFFDPLTGLPNRALFKNKLEQFVSRDKE 135

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              L   V+ ID+D +K IND +G A GD++L   + R+   L+  D L R+SG+ F +I
Sbjct: 136 SMQL-GAVLYIDLDDFKNINDSMGHAWGDELLKKFSERLQIQLRTYDTLFRISGDEFTVI 194

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + S  N   I+  A  + +S+  P  L   E+  + S+G A + +   T+  +LK A+ A
Sbjct: 195 IGSPINIHGISTLAEKLIESLKAPFILDREEVYTSMSVGVAVFPTDAQTAKGLLKCADTA 254

Query: 681 MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AKH G  H   + +        ++ I   L  A+E  E  L Y PII +  +E+ G 
Sbjct: 255 MYSAKHEGKGHYRYYSIDLDKQAKLKLKISNKLRRAIELEEFTLNYQPIIDIETQEVKGA 314

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W++ + G +    F+ IAEE+ +I  I  ++L +       W   A    + + +
Sbjct: 315 EALLRWNNKELGCVGPDIFIPIAEEIGLINEIGNWVLRQACWQNKQWH-LAGYSYLMMSV 373

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++SK L++++    +   + K+    S ++L  +E+ ++GN E +   + RL+K+G+ +
Sbjct: 374 NMSSKQLVNDDFINVVNNALVKSQLEGSYLELELTETALLGNLEIAIEQIYRLKKMGVCI 433

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S +SYL  +  D +K + S +     +E       +II +A N+   + A+
Sbjct: 434 ALDDFGTGYSSMSYLVKLKIDRLKIDKSFIDNIPHSEDDRITTHAIISLANNLNLQVTAE 493

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            I  E   K +    C+  Q  + + PL  ++  K L ++ P
Sbjct: 494 GIETEEQYKYVKSTSCNAAQGYYFSHPLTADNF-KFLLDKSP 534


>gi|332534211|ref|ZP_08410058.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis
            ANT/505]
 gi|332036377|gb|EGI72847.1| sensory box/GGDEF family protein [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1454

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/546 (23%), Positives = 261/546 (47%), Gaps = 12/546 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            A     D +   D      +              +     + ++  I  +    F +IL 
Sbjct: 906  AFSQINDWLLILDKRLMPFSANNSFIETFSNEQTATKISPKLFIKAIGKDKCREFASILK 965

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                      Q +  +R A N  H + I    +  +      Y+ +  D+TEQK++   +
Sbjct: 966  KLK--PTENWQSDVYIRTARNNEHPIHISATAV--TKDTASYYVIVITDLTEQKRAENEL 1021

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LT +PNR      +   +  +  + N +  ++ ID+DK+K +ND  G AVGD
Sbjct: 1022 RYLANFDPLTHLPNRSLMYQNIEKAIKYADKN-NTQCALLFIDLDKFKPVNDSFGHAVGD 1080

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L ++T+R+  +L    IL R SG+ F +++ +  +   + D    +   +A  + + +
Sbjct: 1081 KLLCNITQRVSGMLSENAILGRQSGDEFLVLIQNIKSLQSLRDTVRKISNELANKVIIED 1140

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMI 707
              I ++ASIG A +    +T+  +++NA++AM HAK  G N  + F          ++++
Sbjct: 1141 FSINISASIGVALYPFDAVTTDILIRNADVAMMHAKQGGRNDFKFFSDEMNELIKQKLLL 1200

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            + DL  AV+++  +  Y PII + ++ I G+E L++W + +   IS + F+ +AEE  +I
Sbjct: 1201 ENDLKDAVKDNRFFNHYQPIIDIEEKTINGVELLMRWKN-EGQLISPALFIPVAEETGLI 1259

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            + +    L R   ++     +  +   +I +N++ K +L   + + + A+++ +   P +
Sbjct: 1260 ELLTEQALHRSLIELAPILSENPL--FYISLNLSPKHILKTNITQRLMAILADSQVHPRQ 1317

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES+++ +  ++   L  L+  G  L LDDFGT  S L+YL   P + +K + S 
Sbjct: 1318 LRLEITESILLEDKLKAAKQLQNLKAAGFKLLLDDFGTGYSSLTYLSQFPINVIKIDQSF 1377

Query: 888  MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +   G  +   +I+++I  +A+N+E   IA+ +     +  L  +GC  +Q  + A P+ 
Sbjct: 1378 VNSIGIDKGDESIIKTIFSLAENLELYCIAEGVETREQMLFLAEVGCTVLQGYYFARPMD 1437

Query: 946  FNSILK 951
               + K
Sbjct: 1438 AKDLRK 1443



 Score = 94.6 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 4/184 (2%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                        + I     +  ++ ++  I +      +A     +      ++  LA
Sbjct: 722 TTLNINVAYAPWKSPIAIATYIILILGVLFFIFWQYRSRRVAIEQAHRATIHSQKQTELA 781

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  +   VWD++     V T       LG         I  +L  IH +DR  F    ++
Sbjct: 782 LKNNKSGVWDYNFKDASVNTLRGSE--LGYTDLPERVHIDQFLALIHPDDRRRFENQWEN 839

Query: 471 FVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEG 528
           +  Y++ +  Q  +R++  +  + W     + + +    + L   GI  +ITEQ+ + + 
Sbjct: 840 YFKYKKQQNWQATYRLQHKNGHWLWYQDTGQVIYDPQTNEPLYVSGIYTNITEQRANEQQ 899

Query: 529 ILCN 532
               
Sbjct: 900 AKIL 903


>gi|53804418|ref|YP_113709.1| methyltransferase CheR [Methylococcus capsulatus str. Bath]
 gi|53758179|gb|AAU92470.1| putative methyltransferase CheR [Methylococcus capsulatus str. Bath]
          Length = 1378

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 137/606 (22%), Positives = 270/606 (44%), Gaps = 23/606 (3%)

Query: 366  IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            I+         +  ++I F  +  +    +      ++  +Q+  +  +   V   D+  
Sbjct: 780  ILPYRSRDNCCVEGLVITFGEVTSLKQAEHELIAQAAELRQQAELLKHAH--VLARDLED 837

Query: 426  DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEF 483
              V          G       G   + L          F   L +        G  + E 
Sbjct: 838  RIVFWNSYAEKFYGWTKDEALGRTSHELLN------SRFPLPLATIRQKVLADGHWKGEL 891

Query: 484  RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQD 536
                   +   +        ++ G     + + NDITE+       ++S   +   A+ D
Sbjct: 892  THVDRQGRERTVATHWELYRDAEGVPRAIVEVNNDITERNSFEAQLRQSRHYLDYLAYYD 951

Query: 537  NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
             LT +PNR  F  RL   +  +      R  ++ +D+D++K IND LG  VGD VL+ ++
Sbjct: 952  PLTQLPNRFRFQQRLEQAVSQA-LAGGKRLGLLFLDVDRFKLINDSLGHEVGDSVLLEIS 1010

Query: 597  RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            RR+ E L   D LAR+ G+ F +++   ++    + FA+A  +++  P+ L   E+ V+ 
Sbjct: 1011 RRLEERLGPGDTLARIGGDEFAVLMEDLDDIGYASRFALAAIEAVKTPVVLDRHELFVSL 1070

Query: 657  SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA 714
            S G + +      +  +L++A+ AM+ AK +G  + E F    +   +  + I+  L  A
Sbjct: 1071 SGGISLFPEDSRDADGLLRSADAAMFLAKEKGRGNYEFFTPDLNRRANRLLSIETRLRKA 1130

Query: 715  VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
            +EN EL L + P + L    + G EAL +W+  + G + + EF+ +AE+  +I  +  ++
Sbjct: 1131 LENGELELAFQPQMSLQSGAVTGAEALARWNSRELGRVPADEFIQVAEDSGLIVPLGKWV 1190

Query: 775  LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
            +  + + I  W+      P+ I +NI+++   +      +   +++T   P+ ++L  +E
Sbjct: 1191 IRTVCQTIAGWQRSGLK-PVRIAVNISARQFREPNFVRLVADTLTETAVDPTLLELELTE 1249

Query: 835  SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTE 893
             +++ + +     L  L++ G+S ++DDFGT  S LSYL  +P   +K     +  G+ +
Sbjct: 1250 RLLLQDVDTVVRTLLELKRTGVSFSMDDFGTGYSSLSYLRRLPLSHLKVAREFVPWGADD 1309

Query: 894  -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               ++I R+I+ +AK++E +   + I  E  +     +GCD  Q   ++ PL        
Sbjct: 1310 CNNLSISRAIVSLAKSLELSCTVEGIETEAQLDCFKTLGCDQAQGYLISPPLPPGEFEDF 1369

Query: 953  LKERFP 958
            L+   P
Sbjct: 1370 LRRPLP 1375


>gi|153215850|ref|ZP_01950182.1| GGDEF domain protein [Vibrio cholerae 1587]
 gi|153801998|ref|ZP_01956584.1| GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|153829154|ref|ZP_01981821.1| GGDEF domain protein [Vibrio cholerae 623-39]
 gi|229512919|ref|ZP_04402386.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TMA
           21]
 gi|229520949|ref|ZP_04410371.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|254291898|ref|ZP_04962680.1| GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|297580784|ref|ZP_06942710.1| GGDEF domain-containing protein [Vibrio cholerae RC385]
 gi|124114567|gb|EAY33387.1| GGDEF domain protein [Vibrio cholerae 1587]
 gi|124122457|gb|EAY41200.1| GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|148875343|gb|EDL73478.1| GGDEF domain protein [Vibrio cholerae 623-39]
 gi|150422184|gb|EDN14149.1| GGDEF domain protein [Vibrio cholerae AM-19226]
 gi|229342182|gb|EEO07178.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TM
           11079-80]
 gi|229350168|gb|EEO15121.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae TMA
           21]
 gi|259156587|gb|ACV96530.1| ggdef domain protein [Vibrio fluvialis Ind1]
 gi|297535200|gb|EFH74035.1| GGDEF domain-containing protein [Vibrio cholerae RC385]
          Length = 685

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 222/453 (49%), Gaps = 10/453 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  ++ +  + + 
Sbjct: 214 DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQ-NSHS 272

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +++   
Sbjct: 273 TGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL 332

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  K  + A  +   I+ P  + + +   T SIG + + S   ++ ++L+ A+ A+Y A
Sbjct: 333 -SPAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRA 391

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +           + I++ L  A+   +L L Y P +      I+G+EALI
Sbjct: 392 KASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALI 450

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINI 800
           +W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  + INI
Sbjct: 451 RWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINI 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          E +   + +   +   I+L  +ES+++ N E +   + +L++  IS+++
Sbjct: 511 SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +IA+ +
Sbjct: 571 DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++  L ++GC+  Q      PL    I +
Sbjct: 631 EDTSELAALKKLGCNQFQGYLFDKPLRAEEIAQ 663


>gi|134102848|ref|YP_001108509.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Saccharopolyspora erythraea NRRL 2338]
 gi|291008760|ref|ZP_06566733.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Saccharopolyspora erythraea NRRL 2338]
 gi|133915471|emb|CAM05584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Saccharopolyspora erythraea NRRL 2338]
          Length = 929

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/581 (22%), Positives = 250/581 (43%), Gaps = 12/581 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              +     Q V         +    +R +  V  +   +  +D     V     +  +L
Sbjct: 346 GRTLLVGTAQDVTEQRTAVTRMERSSQRFTDLVAVTPVGIGLFDQAERLVDANDALCDLL 405

Query: 439 GLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G     + G         H + D    +T           R   +  +  +D +  +  +
Sbjct: 406 GYRLDQLRGMTAQ--DMTHPDEDGMRLQTASHQGGRGSGRRKVPQRLLIRSDGEPVYCEL 463

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +      +G    ++ +  DITE++++ E +   A  D+LTG+PNR +  D L  +L  
Sbjct: 464 HVALSVQDDG-TRFWLVVFQDITERRRAAEALRYQATHDDLTGLPNRAAVKDLLGHLLGR 522

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           + + +     V+  DID +K++ND LG   GD++LV+L RR+   L      ARLSG+ F
Sbjct: 523 ADSAEG--VAVLFCDIDNFKRVNDSLGHDAGDELLVALARRLEGGLPDGCTAARLSGDEF 580

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            II         +   A  +   +   + +  + I V+ASIG A    S     ++L+ A
Sbjct: 581 VIICRDIGTVGGVDQLATRVAGLLRTAVPVHGQLIRVSASIGAAVPNGSGAGGEDLLRFA 640

Query: 678 ELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AM+ AK R  G   + S  + +    ++ ++  L  A+ N  L L Y P++   D  I
Sbjct: 641 DAAMFEAKRRGAGKVSLASPALMASADRQLHLEGQLRDALNNDGLTLYYQPVVS-SDGSI 699

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           V  EAL++W HP  G +S   F+ +AE+  +++ ++ ++L    ++  SW        + 
Sbjct: 700 VTAEALVRWPHPDRGLLSPDAFLPVAEQGDLLRELDRWVLRTALKEAASWPSSNGRQ-VG 758

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A       +  + +  +++       R+ L   E+ ++  P R+R  +G L + G
Sbjct: 759 VAVNLAGLVPGGPDFVDTVADVVADVGIDWHRVILELVETALVDLPSRTRHAMGELVQRG 818

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           +   +DDFGT  S L+ L  +P   +K +   ++G        A+ R+++ MA+ +    
Sbjct: 819 VRFAVDDFGTGYSSLARLKDLPAQIIKVDRRFVSGVGGDASDFAVARAVVDMARAMGRQC 878

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +A+ +        L  +G D  Q    + P+       +L 
Sbjct: 879 VAEGVETATQFHVLCGVGVDAYQGWLFSRPIPAREFRTILS 919



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 3/151 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +Q V    Y  + +  +  +   A   +    W+WD   D +  +  +  I+G +S +
Sbjct: 226 GTVQDVTEHRYLERRLRDERRKLHDAQRVARLGTWEWDPATDNIRLSEMLHEIIGKSSET 285

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +     +++  +H +DR   R      V      ++ E R    D     + +    + +
Sbjct: 286 VI-SFESYVAAVHPDDRVWVRNAWRPLVEE-HDPIEVEHRYLRGDGAVRILRMHGTAVRD 343

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           ++G  L  +G A D+TEQ+ ++  +  ++ +
Sbjct: 344 ADGRTL-LVGTAQDVTEQRTAVTRMERSSQR 373



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 4/129 (3%)

Query: 397 SQGIFSDGERQSLAVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             G  ++ ER  L      +    W +         +P +  +   +  +  G   + + 
Sbjct: 109 QSGAPANDERTRLIDAQRMAKVGSWIYYPGTGEFYRSPVLEELFAASGAADTGNPADLVD 168

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H  DR               G L  E  +R       ++    R     +G + R  G
Sbjct: 169 AVHPEDRQKAEDFERQIRRIPEGSL-IEVELRDRGGSRVYL-CTARAEYGGDGRLERLQG 226

Query: 515 IANDITEQK 523
              D+TE +
Sbjct: 227 TVQDVTEHR 235


>gi|238794532|ref|ZP_04638140.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia intermedia ATCC 29909]
 gi|238726112|gb|EEQ17658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia intermedia ATCC 29909]
          Length = 664

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 112/488 (22%), Positives = 229/488 (46%), Gaps = 10/488 (2%)

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R    + E  V     +  ++       S S  +    I    DIT+++++ E +   A 
Sbjct: 178 RGASYEVERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +TG+PNR +  +R+ + +    T       ++ +D+D +KK+ND  G   GD +L  
Sbjct: 238 TDMITGLPNRHAIHERINSAIL---TRGETSVGIIYLDLDNFKKVNDHYGHMFGDRLLKD 294

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L   ++LARL G+ F +++ +  +   +   A  +   + +P  +   E+  
Sbjct: 295 VSLAILSCLGESEMLARLGGDEFIVLVEN-ASMNLLEATAQRILNRMKLPFRVGLIEVYT 353

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLC 712
             SIG A       T   ++++A+ AMY AK  G      F     +   + V +  +L 
Sbjct: 354 GCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQKMNKKVSEYVWLDTNLR 413

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             +E  +L + Y P I     ++  +EAL++W  P+ G I+  EF+  AEE  +I  +  
Sbjct: 414 KGLEQHQLQVFYQPKISAKTGKVHSVEALVRWLSPERGLIAPLEFISYAEESGLIGPLGK 473

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+   +  + W+ +     + + +N++++ L+D  +       +  +    S + +  
Sbjct: 474 WVLQTSMQQAVDWKKRGIN--LRVAVNVSARQLIDEAIVTSFIESLEASELESSLVDVEL 531

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES ++ + + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + S +    
Sbjct: 532 TESCLIDDEDSAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRDID 591

Query: 893 EK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 +++++II +A+ ++  +IA+ +  + + + L  +G D  Q    A P+  + + 
Sbjct: 592 NNPISQSLVKAIIVVAEALKMRVIAEGVETKGEEEFLDSIGIDEKQGFLYAKPMPADELE 651

Query: 951 KLLKERFP 958
             L  + P
Sbjct: 652 HWLVTQHP 659


>gi|325519433|gb|EGC98831.1| RNase II stability modulator [Burkholderia sp. TJI49]
          Length = 667

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/545 (21%), Positives = 240/545 (44%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFAS 178

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            +     E  +   +    +        S S  D    I    DITE++ + + ++  A 
Sbjct: 179 NQA-FAVERYINTVNGPRLFQFRNKFVQSGSGVDEQFLICSGIDITEERNAQQRLIELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+  ++   + D   +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDVLTGLPNRHAISERIHAVIAEQSRDKPGQIGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++  +      +   A  + + +  PI+L   E+  
Sbjct: 298 VSAIISGCLPSGATLARLGGDEFLVLFENGT-RALLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   +++NA+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMHPQHGDSLETLIRNADTAMYVAKEAGKHTYRVFSLEMNQRVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + I +N++++ L D  +     +++      P  + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGVRIAVNVSARQLQDMNIVHQFASILDSAGLKPGLLDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES  + + + +  L+ R R++G  + LDDFGT  S LS L  +P D +K + S +TG  
Sbjct: 535 TESCFIEDEDAAHGLMKRFRQLGAQVHLDDFGTGYSSLSQLSRLPLDAIKLDRSFITGID 594

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +A  +  ++IA+ +    +   L ++   + Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLANALNFSVIAEGVETHEEAAFLKQIDVGHAQGYYYARPMAAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 AWLAE 659


>gi|220935159|ref|YP_002514058.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996469|gb|ACL73071.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 958

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/582 (21%), Positives = 228/582 (39%), Gaps = 29/582 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V         +F   ER  + +   GD V   D         P    + G  S    G 
Sbjct: 378 DVTERKQAEAALFEAKERALVTLHSIGDAVITTDAQGIVTYLNPVAEGLTGWRSSEATGQ 437

Query: 449 IRNWLPYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               +  I         +D  +T L+     R   L     + + D     +     P+ 
Sbjct: 438 PLTKVFRIFNEFTLQPTQDPVKTCLE---EGRIVALANHTVLMSRDGATRAIEDSAAPIR 494

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + NG IL  + + +D+++ ++    +   A  D LTG+ NR  F  RL   L  +  D  
Sbjct: 495 DRNGLILGVVLVFHDVSKTRQMARQLSWQATHDALTGLFNRYEFEQRLAQALAQA-RDRL 553

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D++K +ND  G + GD++L  L   +   ++  D LARL G+ FG++L +
Sbjct: 554 AHHAVLYMDLDQFKVVNDTCGHSAGDELLKQLAYLLMGKVRESDTLARLGGDEFGVLLEN 613

Query: 624 ENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                K  + A  +R+++     +   +   +  SIG    +   +  +E+L  A++A Y
Sbjct: 614 CP-LDKAREIAQELRQTVRDFRFSWKGKSFQIGISIGLVMISDGNLDLAEVLSAADMACY 672

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRL----MDEE 734
            AK  G + +  +        R  ++      +  A+ +    L    I+       D+ 
Sbjct: 673 AAKDLGRDRIHVYHAEDADLQRRHVEMQAINRITDALTHDRFVLYTQRIVATGAAGPDDG 732

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
              +E L++    K   +    F+  AE   ++ AI+ +++ R    +     +      
Sbjct: 733 GEHMEILLRMVDEKGDLVPPGAFIPAAERYDLMPAIDRWVIRRFFSTMAQHIREECGVDG 792

Query: 795 F--------ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                      INI+   + D      +   +      P+ I    +E+  + N  R+  
Sbjct: 793 SGGSASGCLYAINISGASINDETFLGFVTEQLETHRIPPTAICFEITETAAIANLTRAMN 852

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           L+  LRK G   +LDDFGT  S   YL  +P D +K +GSL+          A++ +I  
Sbjct: 853 LINELRKRGCRFSLDDFGTGVSSFGYLKNLPVDYLKIDGSLVKDIVSDPIDRAMVDAINR 912

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           + + +    +A+ +  +  +  L  +G DY Q   +  P   
Sbjct: 913 IGQVMGIHTVAEFVENDEILASLRELGVDYAQGYGIDRPKPL 954



 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 1/140 (0%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +         + +  + ER   A        W+WD+    +  +P +  I G++  S   
Sbjct: 249 RMAEQIQAARKALEDNAERLERAQAMGQMGDWEWDVQTGTLHWSPQLYCIFGVSPESFTP 308

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               +L  +H  DR      +++           + R+   D     +  +   + +++G
Sbjct: 309 SYDGYLDLVHPEDRPALLATVEAARS-SGEPYTLDHRIVRPDGSIRVIQSQGEALRDADG 367

Query: 508 DILRYIGIANDITEQKKSLE 527
            I++  G   D+TE+K++  
Sbjct: 368 RIIKLRGTGLDVTERKQAEA 387


>gi|170748165|ref|YP_001754425.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654687|gb|ACB23742.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium radiotolerans JCM 2831]
          Length = 792

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/674 (22%), Positives = 274/674 (40%), Gaps = 43/674 (6%)

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
           G+A   +   + +   +V  S+A                      Y    LLI A     
Sbjct: 129 GMAAYQVAGHLVWNPALVVVSVALGAGLGAAALVVGLSATTVRGRYGGVALLILAICAHH 188

Query: 349 IWFIGLW--------MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
              +G             T  +    +  A+      I++L G  ++  +          
Sbjct: 189 FTGMGAVTLHPDPTVAIPTGAIRTGWLAAAVAVASCFILLLAGAALMVDLRERRRAD--- 245

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             + ER       + + +       + V+     A + GL +  + G             
Sbjct: 246 -LERERLRSLANAAVEGLVVC-RGGEIVSANEAFARLAGLEAALLTGRS----------- 292

Query: 461 RDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                  L   V       Q  E  +  A      + + +RP++   G +  +     D+
Sbjct: 293 ---LTAYLPDLVSGTGTADQPLETELVPAGGAPIPVEVIMRPVA-EYGRLPHHAVAVRDL 348

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
             ++++   I   A  D LTG+ NR SF  RL   +  +      R  V+ +D+D++K++
Sbjct: 349 RARRRAESEIHYLAHHDALTGLANRTSFHARLEREMRTADALGG-RFAVLCLDLDRFKEV 407

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND+ G A GD +L  L  R+G LL    ++ARL G+ F I+    + S      A  +  
Sbjct: 408 NDLFGHAAGDAMLRDLALRVGGLLDPRQLMARLGGDEFAILTPQADGS--AERLAERILA 465

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++A         I    SIG A +         +L +A+ A+Y AK+ G      +  S 
Sbjct: 466 TLAAVPAASGPVIA--TSIGIAVYPDDAADQRALLSHADAALYRAKNEGRGTCRRYDASM 523

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                DR  ++ DL  AV   EL LVY P  ++    I G EAL++W HP+ G+IS + F
Sbjct: 524 GAQIRDRRQLEHDLRHAVAKGELELVYQPQTQIESGAITGFEALLRWRHPERGSISPAVF 583

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE   I  I  ++L    R    W +     P+ I +N+++  L +    + +   
Sbjct: 584 VPIAEETGAILEIGAWVLREACRAAAGWPN-----PLAIAVNVSAVQLHNPLFVQFVHGT 638

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + ++     R+++  +E+ ++ +P R+ L L +L+ +G+ + +DDFGT  S LS L   P
Sbjct: 639 LYESGLKAERLEIEITETALIRDPARALLTLRQLKALGVHIAMDDFGTGYSSLSNLRSFP 698

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +GS +    S  +  AI+RS++ + + +   ++A+ +    ++  L    C   
Sbjct: 699 FDRIKIDGSFIKAVHSNPQGAAIVRSVLGLGRGLGLAVVAEGVETAEELSFLADEQCHLA 758

Query: 936 QDSHVASPLGFNSI 949
           Q   +  P      
Sbjct: 759 QGYLLGRPAPIARF 772


>gi|88704792|ref|ZP_01102505.1| protein containing EAL/GGDEF/PAS domains [Congregibacter litoralis
           KT71]
 gi|88701113|gb|EAQ98219.1| protein containing EAL/GGDEF/PAS domains [Congregibacter litoralis
           KT71]
          Length = 810

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/560 (23%), Positives = 248/560 (44%), Gaps = 15/560 (2%)

Query: 403 DGERQSLAVLG----SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           D +R+   V      + + +   +   + V       +  GL+   + G       +   
Sbjct: 235 DAQRRQALVTSVFANAAESIVILNGNHEIVDANKTFESFTGLSREEVLGKSLKAAKH-AR 293

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D   F  + D+ +  R G    E     A       + RI  + +  G+   ++ + +D
Sbjct: 294 DDSGEFEALWDTLL--REGSCSGEVTTFDARGHKRSELCRITAVIDDQGEAHHFVCLYSD 351

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT  K+    +   A  D LTG+ NR  F DRL   +  S         +  ID+D +K 
Sbjct: 352 ITPLKEHERELETIAHFDPLTGLVNRSLFEDRLYQAVATSER-QGTFLALAYIDLDGFKL 410

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G AVGD  L+++   + E L+  D LAR+ G+ F  ++   ++    A     + 
Sbjct: 411 VNDSFGHAVGDRYLIAIADNMNEALRDTDTLARIGGDEFIALISDLDDPEGFAPVVERLL 470

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++ + P+ L  +EI V+ASIG A +    +    +++ A+ AMY AK +G N    F   
Sbjct: 471 QATSKPVMLEGQEIPVSASIGIARFPLDGLEPGSLVRCADQAMYEAKRQGKNRFYVFDRG 530

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++      D+  A+ + E  L Y P + ++  E++G+EAL +W HP  G +   EF+
Sbjct: 531 LVGNEGAS--GDVRRALADEEFELFYQPKVNMLTGELLGVEALARWRHPHRGLLQPPEFL 588

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + +   +      ++L      I  WR Q       + +NIA   LL +   E + + I
Sbjct: 589 PLIDRENLQIEFGEWVLSEAVEQIRQWRGQEIATQ--VSVNIAGVHLLQSNFLESLGSAI 646

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++        +++   E+  + +  R   ++      G+S  LDDFGT  S L++L  +P
Sbjct: 647 ARYPDLLAKTLEIEILETSALNDVARVAKIIEYAHAFGVSFALDDFGTGFSSLTHLRRLP 706

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             TVK + S +     + +  AI+ +++ + + +   +IA+ +      + L  M C++ 
Sbjct: 707 VSTVKIDTSFVRDMLESSEDTAIVSAMVGLCRGLGRQVIAEGVSTPAHAQALVNMACNFG 766

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q   +A+P+   ++   ++ 
Sbjct: 767 QGYAIAAPMPAKALAGWIEN 786



 Score = 41.5 bits (96), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 12/138 (8%)

Query: 401 FSDGERQSL-------AVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIRN 451
            ++  R  L        +  + D ++  D     +  +  +AT+           G    
Sbjct: 106 QTEKPRYELPDAMIRTIMTSTDDYIFFKDTHHMLLAGSERMATLCQSIDRWEEFAGKADY 165

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +      +    L+  V   +G  +        D +  W+  R  P+ +  G +L 
Sbjct: 166 D---VFPEHLADMYYALEVEVYAAKGMAKAIQPYTHRDGRRGWVDNRKYPILDQEGRLLG 222

Query: 512 YIGIANDITEQKKSLEGI 529
             G+A D++ +  +    
Sbjct: 223 LYGVARDVSTEIDAQRRQ 240


>gi|120600665|ref|YP_965239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|146291434|ref|YP_001181858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|120560758|gb|ABM26685.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
 gi|145563124|gb|ABP74059.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
 gi|319428335|gb|ADV56409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 706

 Score =  455 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 128/557 (22%), Positives = 240/557 (43%), Gaps = 9/557 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S  +  S + V+  D     +     +  I G ++  +       L   +      
Sbjct: 153 KEILSTTLEESAEAVYITDDDNRILAVNKAMCRICGYSAEQLISHTPAMLESRN---LSQ 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                      +RG  Q E   + ++          R +   +G+   ++ I +DI+ QK
Sbjct: 210 GEETDCQLAIKQRGSWQGETLKKRSNGSTFPAWQSSRRIV-VDGETPYHVNIFSDISTQK 268

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PNR      L + L+   TD NL   +M +D++ +K IND  
Sbjct: 269 QLETQLTTRAMYDTLTGLPNRFHLKQLLNSALEKLQTDPNLLGALMFLDLNGFKNINDSF 328

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD VL  +  R+         +AR+ G+ F +IL   +   +I  FA  +      
Sbjct: 329 GHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLILQDCSCKEEIQLFAEQILSLFDS 388

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRS 702
           P  +  ++  +  SIG A + +    +++++  A+ AMY AK    +       +S    
Sbjct: 389 PFEIEGQKFFLGTSIGIALFPTHSDQATQLISLADTAMYCAKKSPPHLVFYDKSMSQAAE 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +   L  A    +  LVY  I+ L   + +  EAL++W      +  +SEF+ + E
Sbjct: 449 IKLKLINSLRHAHSLKQFKLVYQAIVDLHTNQTIAAEALLRWQKSPTEHYEASEFVPLLE 508

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++LE+  +    WR Q       I +N++   L   +  E +   +    
Sbjct: 509 ETGLIVNIGQWVLEQACQQATLWRSQY-QSDFKISVNVSPLQLEHVDFVEQVINALEMAA 567

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES ++  PE++RL L R++ +G+S+ +DDFGT  S LS LG +P D+VK
Sbjct: 568 LPADALILEITESALLRQPEQARLTLNRIKSLGVSIAIDDFGTGLSSLSRLGTLPIDSVK 627

Query: 883 FNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +    +  +      +  +I+ +A+ ++   +A+ I  +     +T MG  + Q     
Sbjct: 628 IDAEFALRLNDISGQKLCYAIVQLAQALDIHFVAEGIETQQQKDIMTDMGQGFAQGFLFG 687

Query: 942 SPLGFNSILK--LLKER 956
            P       +  L+++ 
Sbjct: 688 YPSAVEHFTQTFLVEKH 704


>gi|104780661|ref|YP_607159.1| sensory box protein/GGDEF family protein [Pseudomonas entomophila
           L48]
 gi|95109648|emb|CAK14349.1| putative sensory box protein/GGDEF family protein [Pseudomonas
           entomophila L48]
          Length = 818

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/614 (20%), Positives = 250/614 (40%), Gaps = 22/614 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++    +   + ++ +      + +     F+  +  + ER  + +   GD V   D+  
Sbjct: 206 VLMLTNLATALFLIAMAWRRSSKLLAQRQAFAIALQEEKERAQITLESIGDAVITADVHG 265

Query: 426 DRVTTTPDIATILGLASGSMHG-PIRNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQ 480
                 P    +    +    G P+      +      + R     +L   +       +
Sbjct: 266 CIAYMNPAAEQLTHWQAAQAQGLPLAALFSLLDESAESDSRTLVEQVLSGSLKGGAEHAR 325

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
              R+   D     + +   P+  + G +   + + +D+T++++ +  +   A  D LTG
Sbjct: 326 LIQRL---DGSTVSVNLVGSPIL-TEGQVSGIVVVLHDMTQERQYIANLSWQATHDALTG 381

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR+ F  RL   L+  A     R ++M +D+D++K +ND  G A GD++L  +   + 
Sbjct: 382 LANRREFEYRLEQALNALARQAG-RHSLMFLDLDQFKLVNDTCGHAAGDELLRHICAVLQ 440

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIG 659
             L+  D LARL G+ FG++L +     +    A  +R+++         R    T SIG
Sbjct: 441 SGLREGDTLARLGGDEFGVLLENCP-PDQAERIAEHLRQAVQSLHFVWKGRPFVTTVSIG 499

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAV 715
                    T    L+ A++A Y AK +G N V+ +         R   +   + L +A+
Sbjct: 500 LVHIAQPPGTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSMRFGEMAWIQRLHVAL 559

Query: 716 ENSELYLVYHPIIRLMDEEIVGL-EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           E +   L    I  L  +E  G  E L++        I    F+  AE   ++ A++ ++
Sbjct: 560 EENRFCLYAQEIAPLRPQEGAGHLEILLRLHDENGRTILPDSFIPAAERYGLMTALDRWV 619

Query: 775 LERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +  + + +    D+    P+ +  IN++   + D++  + +Q L  +    P  I    +
Sbjct: 620 VRSVFQVVRQCLDEGREGPLAMCAINLSGSSIGDDKFLDYLQRLFEEFSIPPWLICFEIT 679

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K +GS +     
Sbjct: 680 ETSAIANLGSAIRFINELKALGCKFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLD 739

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL--GFNSI 949
                A++  I  +   +    IA+ +   +  + L  +G DY Q   +  P     +S+
Sbjct: 740 DPINRAMVEVINHIGHVMGKRTIAEFVETPLIEQALQEIGVDYAQGYLIERPQVFTCDSL 799

Query: 950 LKLLKERFPLVKNT 963
            +      PL+   
Sbjct: 800 QRQRIAARPLLHRA 813


>gi|70730694|ref|YP_260435.1| sensory box-containing diguanylate cyclase [Pseudomonas fluorescens
           Pf-5]
 gi|68344993|gb|AAY92599.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 855

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/569 (23%), Positives = 260/569 (45%), Gaps = 20/569 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + V A       + +  ER       + D +W+ D        +     + GL   S  G
Sbjct: 291 RQVQALRANRWALAASEERFRDVAEAASDWIWEVDGQLCFTYLSERFEAVTGLTRESTLG 350

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                L          +          RR +   +   R    Q     + +R M+    
Sbjct: 351 RPMTELLSCEQGSLGQWLAA-----PERRSQAIQQCLYRDGQGQARVCRLSVRAMAAG-- 403

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               + G A+DITE+  +   +   +  D LTG+ NR    + L   L    T       
Sbjct: 404 ---GFRGTASDITEEVAARRRVEYLSQHDALTGLANRTRMQEFLEGRLQAPPTLQEPLL- 459

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K +ND+LG A GD VL  +++R+ + L+  D++AR+ G+ F +++  +   
Sbjct: 460 MLSVDLDRFKPVNDLLGHAAGDQVLHEVSQRLAQCLRSEDLVARVGGDEFVLVVTGQVAG 519

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +I      + + I  P  +   E+ ++ASIG A        + E+L+ A++A+Y AK  
Sbjct: 520 HEIEGLCRRLIERIEEPFYIAGHEVFISASIGIARAPGDASQAEELLRFADIALYEAKAA 579

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +    +   ++    +R  ++ DL  A+E  +L L + P  R++D +++G EAL++W 
Sbjct: 580 GRSTWRFYAPYMNVRIIERRRLERDLRHAIEQDQLLLHFQPRYRVLDGQLMGAEALVRWQ 639

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +    F+ IAE+  +I  ++ ++L    R   +W +        + + ++  + 
Sbjct: 640 HPQHGLLGPDVFVPIAEDTGLILPLSNWVLHAACRAARAWPEGRL-----LAVKLSPAEF 694

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           L  +L   + A++ ++   PSR++L  ++ V++ +      ++  L+ +G+ L +DDFGT
Sbjct: 695 LRGQLVARIAAVLKQSGLEPSRLELEMTDKVLLDDSRHVLTIMQGLKALGVQLLIDDFGT 754

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL   P D +K + S +          +I+ +I+ +   +   ++A+ +     
Sbjct: 755 GYSALQYLQTFPLDGLKIDSSFIARLNHNDAGRSIVEAIVDLGHALSLRVVAEGVQAAEQ 814

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
              L  + CD +Q  H++ PL   ++L+L
Sbjct: 815 FGVLRDIQCDEVQGPHLSPPLDQEALLEL 843


>gi|166712073|ref|ZP_02243280.1| hypothetical protein Xoryp_11615 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 920

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/617 (21%), Positives = 250/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 303 FELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 360

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 361 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 418

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  D+T ++++ E 
Sbjct: 419 LRISDGGLPE-QLELCFYRNSGQLIWVQVLIELDR-REGLPPRFVALFRDVTREREANER 476

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K +ND  G A G
Sbjct: 477 IELLAHYDRLTGLPNRFLLREQAENAIREAHERGQV-LAMLLIDLDGFKSVNDSFGYATG 535

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 536 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 595

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 596 HLTLKLGASIGIALQGEGLSDFDSLLRAADAAMYAAKESGRNTFHYYSQDVLLRAQRRLE 655

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+E  E  LVY P++  + +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 656 LEHALQGALEREEFTLVYQPLVNTVGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 715

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 716 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVSVNVSAVQLRERGFAERVLQICRDNGWPPS 774

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 775 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 834

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L   GCD IQ    + PL
Sbjct: 835 FVQGMLDDGNTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRHQGCDEIQGYFYSRPL 894

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 895 SPRDMAQWLREAEAGMR 911



 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +       +      IH  D  +  
Sbjct: 100 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPPPNNLTALSGLIHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 160 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLREQ 227



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+    + G        
Sbjct: 220 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMIHLRLQGIRDILRLL 279

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
              +     R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 280 CRPS-VAQLRSAWRK-IKHEGMPVHFELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|194365644|ref|YP_002028254.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348448|gb|ACF51571.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
          Length = 710

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 215/437 (49%), Gaps = 7/437 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    + + +   A  D LT +PNR     R+   L  +      R  VM +D+D +K++
Sbjct: 256 TSLTDAQQELTQAALHDPLTRLPNRLLLQRRIVQALAEA-EQGGSRFAVMFMDLDGFKQV 314

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +LV++  R  +LL+  D+LARL G+ F +++  E++   +   A  + +
Sbjct: 315 NDAYGHQAGDALLVAVAERTRQLLRPNDMLARLGGDEFVLVVRIEHD-EDLPTLARRILQ 373

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           ++     L + E+ VTASIG A       +  +++  A+ AMY AK  G N    F   +
Sbjct: 374 AVGSGPLLADNELQVTASIGVAICPDHAASERQLMAFADAAMYQAKESGRNAFVLFADWM 433

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     +  +  DL  A+ + +L+L Y P IR+  +++ G EALI+W HP+ G I    F
Sbjct: 434 NDSAEQQFRLLADLRRAIGSEQLFLNYQPKIRVATQKVAGAEALIRWRHPEHGLIPPDRF 493

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    I  I  + L++    +  W D        + +N++        L + ++ +
Sbjct: 494 IRLAERSGAINDIGRWALDQACLQLRRWHDA-GHEGWSMSVNLSPVQFSSPHLLQDVREV 552

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +   +P  + L  +ES VM + + S  LL  L  +G+ +++DDFGT  S L YL  +P
Sbjct: 553 IERYNIAPRHLVLEITESTVMRDTDTSLRLLQALSALGVGISIDDFGTGYSSLLYLKRLP 612

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + + +     + + + I+ +I+ +   ++  I+A+ +        L R+GCDY+
Sbjct: 613 ATEIKIDHAFVRDLEHSAEDVVIVSAIVALGHALDMDIVAEGVETAAQRAYLERLGCDYL 672

Query: 936 QDSHVASPLGFNSILKL 952
           Q   +  P+     ++L
Sbjct: 673 QGYLLGRPVDAARFMQL 689


>gi|119898516|ref|YP_933729.1| GGDEF/EAL/PAS-domain-containing protein [Azoarcus sp. BH72]
 gi|119670929|emb|CAL94842.1| GGDEF/EAL/PAS-domain containing protein [Azoarcus sp. BH72]
          Length = 567

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 138/529 (26%), Positives = 251/529 (47%), Gaps = 13/529 (2%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
            +     +LG  +       R +   +H  DR +    L   +G     +++  R R AD
Sbjct: 38  MSESWREVLGTQADL---RWRRFTELVHELDRADVEQRL-GHIGEALSTVRFSCRCRKAD 93

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            ++  +   +    + +         A +++E     E  L   + D LTG+PNR  FLD
Sbjct: 94  GRYVGLTWNVSHDVDQHLFYASAHETAVNLSEL----EARLPEVYIDGLTGLPNRGLFLD 149

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R+   +  +    +LR  V+   ID++  IN  LG  VGD +L+ +   +    +  D++
Sbjct: 150 RVCHTMLRAQRRKDLRFAVIHCGIDRFSVINHSLGNRVGDLLLIEVANLLRRSTRPTDMV 209

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ FGI+L    ++         ++++  +P  L E E+  + S G          
Sbjct: 210 ARLGGDEFGILLEDIRDASSPVRVVKRIQENFVLPFQLHEHEVFASMSTGITLGGEQYEE 269

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           +  ML++A++AM  AK  GG     F   +      R+ ++ DL  A+E  +    Y PI
Sbjct: 270 ADLMLRDADMAMASAKAHGGGGYVLFDRGMHEEALRRLDLELDLRRALEKHQFEAYYQPI 329

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +RL D  ++G EAL++W+HP  G IS +EF+ +AE+  +I  I  +ML+     +  W+ 
Sbjct: 330 VRLKDNRLMGFEALVRWNHPDRGLISPAEFIPLAEDNGLIVHIGRWMLQEACAQMRRWQL 389

Query: 788 QANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           +    P + + +N++++ LL  +L   ++  +  T  S   +KL  +ESV+M + +R+  
Sbjct: 390 EYPRRPALTVSVNLSARQLLHPQLLPEIRRTLRDTGLSARHLKLEITESVMMEDAQRAIE 449

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIP 904
           LL  L++  +SL LDDFGT  S LSYL  +P D +K + S +    E     + + +I+ 
Sbjct: 450 LLEALKRTRLSLMLDDFGTGYSSLSYLHRLPIDALKVDRSFVMHMHERADDRSFVETIVN 509

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A  +   ++ + +        L  +G +Y Q    + P+  +    L+
Sbjct: 510 LAHKLGRAVVCEGVELPEQEALLRELGVEYGQGYLYSRPVTASQAEMLI 558


>gi|325290802|ref|YP_004266983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966203|gb|ADY56982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 740

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/574 (22%), Positives = 257/574 (44%), Gaps = 14/574 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            ++      + I    +R    V   GDI++  ++             + G     + G 
Sbjct: 136 ELIQLKKEKKEIELSEKRYKTLVNNLGDIIYTCNLRGMITMVNKMFCQLTGKTEKKILGT 195

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 Y +     N     D  +            E++    D    +    + P+S+ 
Sbjct: 196 RIT--DYFNPE---NTAIAWDRAIAELMLTGEPAHLEYQYFLPDGSSRFYYATLSPISDL 250

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N  I+ +IG  +DIT  K + + ++  A+ D+LT +PN+  FLDRL T + ++  +  ++
Sbjct: 251 NKKIVGFIGSNHDITSLKINEQKMISLAYHDSLTKLPNKTLFLDRLRTAISIAERN-KVK 309

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  +D+D +K++N V G   GD +L  + +++   ++  D +AR   ++F ++     
Sbjct: 310 IGVAFVDLDNFKELNAVYGHDHGDKLLFEVAQKLVSCVRSYDTVARFGEDKFLVLFQHLI 369

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++      +R ++  P ++    I++TASIG   +    + ++E++ NA  AM  AK
Sbjct: 370 HVNELFTVFERIRLALFTPFSIGRHSISLTASIGIGIYPDDGVDANEIILNANTAMDKAK 429

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +      +      ++  L  A+ N E  L Y P   +    + G EAL++
Sbjct: 430 KMGKNCYYFYNDQFKEALNRQNMLRTMLISAMNNQEFLLYYQPQYEIPTRRLRGFEALLR 489

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W++P +G I   EF+ IAEE   I  +  ++++          D+     + + +NI+  
Sbjct: 490 WNNPAFGLILPVEFIKIAEETKQIIPLGKWVIKNACEVCKMINDKYG-LNLIVSVNISLV 548

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L + +  + +   +  +   PS ++L   E+V+M N +    +L +L+K GI + LDDF
Sbjct: 549 QLQEKDFFDTIMETVKHSGIKPSNLELDIKENVIMENFDYMVSVLKKLKKAGIRIALDDF 608

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRI-AILRSIIPMAKNIETTIIAKDIYGE 921
           G     LS L  +P D VK +  L+          A+  SII +  +++  ++A+ +  +
Sbjct: 609 GLSNLSLSQLKRLPLDMVKLDKELLNYIEYPNSQGALTDSIIDLIHHLDIEMLAEGVENK 668

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  L +  CD IQ    A P+    I +++++
Sbjct: 669 EQVDYLLKGNCDNIQGFFFAEPVAREKIEEIIEK 702


>gi|332715513|ref|YP_004442979.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
 gi|325062198|gb|ADY65888.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
          Length = 725

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/437 (29%), Positives = 226/437 (51%), Gaps = 9/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K++ E I   A  D LT +PNR+    RL  IL  SA        +  +D+D +K+IN
Sbjct: 279 DRKRAAEHIAFLADHDMLTRLPNRRFLDTRLPEILAASAKAKR-HVGIGFLDLDNFKQIN 337

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +VGD +L     RI   L   D++ R+ G+ F IIL    +          +R +
Sbjct: 338 DTLGHSVGDALLSKTAERISRSLGRNDLVLRVGGDEFVIILHKHKD--DFESRLQHIRAA 395

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           ++ P+ L   +I VT SIG A +     T++E++  A+LAMY AKH G + + +F     
Sbjct: 396 VSQPLRLGNYDIKVTCSIGMAFFPEHGETTAEIVAAADLAMYEAKHSGRDGIATFTPRMS 455

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +    E+L  AVE  E  L Y P + L+   I G+EAL++W HP  G +  +EF+
Sbjct: 456 DDLRKKFTRIEELRKAVERDEFVLHYQPQVDLLTGRISGVEALVRWQHPVEGLLGPAEFI 515

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   +L++      +W +    PP+ + +NI+ +      L E +++ +
Sbjct: 516 GLAEETGLIVELGESVLKKACLQAQAWCNAGL-PPVKMAVNISPRQF-QGGLVEQIRSAL 573

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++  +PS +++  +E++++ + E S  ++  ++++G+SL LDDFG   S L  L   P 
Sbjct: 574 TQSGLAPSLLEIEITETLIIQDVETSVRIMRVIKEMGVSLALDDFGIGYSCLGMLKTFPL 633

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +T   E  K  AI+  +I +A ++   +IA+ +        L   GC Y Q
Sbjct: 634 SCMKIDRSFLTHLPEKTKDSAIVSIMIQLAGSLGIDVIAEGVETGEQAAFLRAAGCPYGQ 693

Query: 937 DSHVASPLGFNSILKLL 953
             + + P+  ++I  +L
Sbjct: 694 GYYFSRPVQADAIEAML 710



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPD---------IATILGLASGSMHGPIRNWLPYIH 457
               +    D ++  D+    +              +  ++GL    ++G          
Sbjct: 30  LEAMIDHVPDFIYAKDLEGRFLFANRAIVTENGFDTVEELIGLTDYDINGDAAQ------ 83

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              R          +      L +E R    D    W+++   P+ + NG I+  +G + 
Sbjct: 84  ---RAGIPETEARVMRTGEPDLGFEERAMRGDID-RWLMMSRVPLKDKNGAIIGVVGASR 139

Query: 518 DITEQKKSLEGILCNAF 534
           DIT++K S   +   A 
Sbjct: 140 DITQKKASERLLQAQAH 156


>gi|310814832|ref|YP_003962796.1| diguanylate cyclase [Ketogulonicigenium vulgare Y25]
 gi|308753567|gb|ADO41496.1| diguanylate cyclase [Ketogulonicigenium vulgare Y25]
          Length = 659

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 255/565 (45%), Gaps = 14/565 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           S+ E    A+  +  IV   D+             I G +   + G     L   IH  D
Sbjct: 101 SEMEFIRYALDSAA-IVAMTDVRGTITFVNSKFCEISGYSRDELIGANHRILNSGIHSTD 159

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              FR++     G        E   R  D   +W+   I P  N NG +  Y  I  DI+
Sbjct: 160 --FFRSMYRRIAGGE--VWHGEICNRRKDGSHYWVDTTIVPHVNINGKVDSYTAIRFDIS 215

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +  + E +      D+LTGIPNR+SF + L ++L     D+  +  + ++D+D +K+IN
Sbjct: 216 SRHAAEELLRRIVSVDSLTGIPNRRSFQEYLESVL-PPERDNPGQVHLALLDVDTFKEIN 274

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L  ++ R+  L      +ARL G+ F +++ +  +   + D        
Sbjct: 275 DTFGHDVGDTLLKLVSERLSALSSPDVFVARLGGDEFCLVMTNM-DRTGVNDLVQTALAH 333

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P+ L       +ASIG AS+     +  E+ K A++A+YH+K  G +  + F     
Sbjct: 334 LREPVPLGSVIRRYSASIGVASFPEHAGSLDELFKAADMALYHSKALGRDQAQFFIPRLR 393

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   +   + + ++  + +L Y PI+ +     +  E L++W+HP    I+ + F+
Sbjct: 394 EIAERKSELLHAVEVGLDRGQFHLYYQPIVPISSPGALSFEGLLRWNHPDRNLITPAAFL 453

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              ++  +  AI +F++E+  RD+    DQ       + INI + D   +   +    L 
Sbjct: 454 TDMDDPGLQAAIGMFVVEQAFRDMRIMLDQNVPLR-RLAINITNADFRSDAFVDRFFELS 512

Query: 819 SKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +T   PS+  +  +E V +  + +     L +L   G+ + LDDFGT  + L++L  +P
Sbjct: 513 RETGIPPSKFCIEVTEGVFLGRDFQHLAGRLSQLHAAGVEIALDDFGTGFASLTHLRRMP 572

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++  T   + +AI+R +I +A ++   + A+ +     ++ L  + CDY 
Sbjct: 573 IDRIKIDRSFISNITNSIEDLAIVRGVIDIAHSMGKVVTAEGVETRAQVELLHSLRCDYY 632

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q  + +     + +   ++   PL+
Sbjct: 633 QGWYFSKATPIDGLRDAVRNMPPLI 657


>gi|254226534|ref|ZP_04920117.1| GGDEF domain protein [Vibrio cholerae V51]
 gi|125620938|gb|EAZ49289.1| GGDEF domain protein [Vibrio cholerae V51]
          Length = 685

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 222/453 (49%), Gaps = 10/453 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  ++ +  + + 
Sbjct: 214 DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQ-NSHS 272

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +++   
Sbjct: 273 TGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL 332

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  K  + A  +   I+ P  + + +   T SIG + + S   ++ ++L+ A+ A+Y A
Sbjct: 333 -SPAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRA 391

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +           + I++ L  A+   +L L Y P +      I+G+EALI
Sbjct: 392 KASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALI 450

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINI 800
           +W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  + INI
Sbjct: 451 RWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINI 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          E +   + +   +   I+L  +ES+++ N E +   + +L++  IS+++
Sbjct: 511 SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +IA+ +
Sbjct: 571 DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++  L ++GC+  Q      PL    I +
Sbjct: 631 EDTSELAALKKLGCNQFQGYLFDKPLRAEEIAQ 663


>gi|209549895|ref|YP_002281812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535651|gb|ACI55586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 927

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 250/575 (43%), Gaps = 15/575 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           LIG+  I    +          +  R   +A+   G  +  +D     +        I  
Sbjct: 354 LIGYAKITKDNSKQKADADRIEEITRNLDVALENIGQGICMFDRDERLLLCNKRYLEIFR 413

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              GS+  P   +   + I    N     ++         +    +R+            
Sbjct: 414 FPEGSVR-PGMVYREIVDIGYAANTEDPGEAAARAEAHYTRNMALIRSGAGSAVHKYPSG 472

Query: 500 RPMSNSNGDI--LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +  +   +    ++    DIT++ KS E +   A  D LTG+PNR  F + ++  + +
Sbjct: 473 ISIQQNVNMLPNGGWVVTFEDITDRLKSEEQVAFLAKHDGLTGLPNRLQFGESVSEEMMI 532

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +         V+ ID+DK+K+IND  G   GD VLV L RR+ E  +  + +AR  G+ F
Sbjct: 533 ADRVRG-NVAVIGIDLDKFKEINDQHGHGTGDKVLVELARRLDEARQEGEFIARFGGDEF 591

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
                  +    + DF   +  ++   + +   EI   AS+G A + S       +L NA
Sbjct: 592 AA-TKRFDELSALHDFIARLEGALTGTVTIDGFEIKTGASLGVAVYPSDAAGVDGLLANA 650

Query: 678 ELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LAMY AK             +      R  + +DL  +++ S+L+L Y     +   EI
Sbjct: 651 DLAMYRAKQSLLQKVCFYEAAMDEHARRRRSLAKDLWASIDRSQLHLHYQVQKSVRTGEI 710

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G E L++W H + GNI   +F+ +AEE   I  I  ++L    R+  SW +        
Sbjct: 711 TGYEVLLRWRHHERGNIPPMDFIGLAEECGAILPIGEWVLREACREAASWNNSH-----K 765

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I +N++   L   ++   +  ++ +T  +P R+++  +ES ++ + +++   + +++ +G
Sbjct: 766 IAVNLSPIQLGHADMAVVISEILLETGLNPRRLEIEITESSIIVDKDKALRTMRQIKALG 825

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           +S+ +DDFGT  S L  L   PFD +K + S M    ++ +  AI+R+I+ + +++E  +
Sbjct: 826 VSIAIDDFGTGYSSLETLRSFPFDKIKLDKSFMAEVETSPQSKAIVRAILALGRSLEVPV 885

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +A+ +  +  +  L    CD  Q   +  P     
Sbjct: 886 LAEGVETQAQLDTLLEEQCDEAQGYLLGKPQAMGE 920



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 93/330 (28%), Gaps = 18/330 (5%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276
           + + T   A     + +     L+    +  G        S +    +    +   + ++
Sbjct: 48  VWLVTAGAAGGFGIWATHFIAMLAYDPGVVVGYHAGLTLVSLLVAIVATTAAVAAKIAFD 107

Query: 277 RWHAKVGYITFSGIACI-----AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
           RW A V      G+         +L                 ++   V +      + G 
Sbjct: 108 RWVANVLAGVLFGVGIWSMHFAGMLAIEFPGEISWDTGFVTASVVLGVAFSVAAFRFAGR 167

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRL---------DNDIIQPALVGGLVLIVILI 382
            G      L P  +L        + A+                ++ PAL+   +  V   
Sbjct: 168 SGRSTLGKLAPTVLLTLGVVALHFTAMAGITVIPGITALNPAMLLSPALMAVTIAAVTFS 227

Query: 383 GFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGL 440
                         SQ   +  ER   L V G  D  ++  D                G 
Sbjct: 228 LLAAGFAAAIFAVRSQAKTAGAERNFKLLVQGVTDYAIYMLDPDGKVSNWNAGAERAKGY 287

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           ++  + G   ++  +    DR               G+ + +      D    W  + I 
Sbjct: 288 SADEIVGK--DFSLFYSEEDRRKGLPQRALQTARSEGKFEAQGWRYRKDGSSFWAHVVID 345

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           P+ +  G+++ Y  I  D ++QK   + I 
Sbjct: 346 PIYDKAGELIGYAKITKDNSKQKADADRIE 375


>gi|313202429|ref|YP_004041087.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441745|gb|ADQ85851.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
          Length = 771

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 10/439 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR  F DRLT  L LSA ++N R  ++ IDID +K IND LG 
Sbjct: 327 QMRYQHLAHHDILTGLPNRLLFQDRLTHALALSARNNN-RVGMLFIDIDHFKNINDSLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD++LV++  R+   ++  D  ARL G+ F +++    N+ + A  A  + +++  P 
Sbjct: 386 VIGDELLVAIVERLKLRIREQDTFARLGGDEFVLLIEQLQNASEAATIASNLLEALKTPF 445

Query: 646 NLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702
           +L    E+ ++ASIG +        ++++++NA+ AMY AK  G N  + +         
Sbjct: 446 HLSGNCEVVISASIGISVCPEDTQDATQLIRNADSAMYRAKDTGRNRYQFYTEELTQRAQ 505

Query: 703 DRVMIKEDLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +R+M +  L  A+ +    L Y PI           I   E LI+W       I    F+
Sbjct: 506 ERLMTESRLRQAIRDKAFVLHYQPIYSKGEDGGAPSIFSCECLIRWQQDDGSLIYPDLFI 565

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  +I  I  ++L+     +  W  +     + + +NI+++   D      +  ++
Sbjct: 566 PCAEETGLIIPIGEWVLDHACAQLAEWDTRLPDNTLSMAVNISARHFCDANFVMTVHEVL 625

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P R+ +  +E+ VM   + +   L  L + G+ + LDDFGT  S L+ L  +P 
Sbjct: 626 KRHAIAPGRLIIEITENAVMDRMDIAIPTLETLVRTGVRIALDDFGTGHSSLAKLKTLPI 685

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +     +   + +  SII MA+ +    +A+ +  +     L + GCD  Q
Sbjct: 686 HALKIDREFVKDIPDSTDDMQLAASIIRMAQGLHLQTVAEGVETQEQYDFLAQAGCDKFQ 745

Query: 937 DSHVASPLGFNSILKLLKE 955
              ++ P+    I  LL  
Sbjct: 746 GYLLSRPVTAEKIYTLLAA 764


>gi|169826885|ref|YP_001697043.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
 gi|168991373|gb|ACA38913.1| sensory box/GGDEF family protein [Lysinibacillus sphaericus C3-41]
          Length = 668

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 215/450 (47%), Gaps = 8/450 (1%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG+++       D        E     A  D LTGI NR++F +     L+     ++ +
Sbjct: 218 NGEVIGVHLFVKDANSFLNDHEAFYYLALMDELTGIWNRKAFKEHWLHYLND-KKQEHKQ 276

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++++DID++KK N+ LG + GD+++   ++R+ EL      L R + + F  +L    
Sbjct: 277 AALILVDIDRFKKFNESLGESKGDELMRMFSQRLNELCYSKCALYRYNSDEFIFVLKDAT 336

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              KI   A A+   +  P  +  +E  ++ SIG +   +       +++ A+ A++  K
Sbjct: 337 -IQKIEHTANAILNVLKQPFMIDGQEYFISVSIGISLSPADGKDLETLVRKADKALFSVK 395

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G +H   +R            ++  L  A+E +EL L   P + L +  I   EAL++
Sbjct: 396 EHGRSHYRYYREDMTAIFPNEALMEAHLRRAIEFNELSLHLQPQMDLTNNSINSFEALLR 455

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W++ K+G +S ++F+ IAE   +I  I  ++++ + R    W+ +    P+ I +NI+ K
Sbjct: 456 WNNRKFGFVSPAQFIPIAEASGLIIEIGDWIIDEVCRHQKEWQSK-GYRPVRIAVNISPK 514

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                     ++A + K       +++  +ES  M N   +  +L  L+++G+ +++DDF
Sbjct: 515 QFRKENFARKIKAALKKYEVPAELLEVEITESS-MTNVHETFSILTELKQLGVYVSVDDF 573

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P D +K + S +      +K  AI+++II M+ N+   +IA+ I   
Sbjct: 574 GTGYSSLSYLKRYPIDIIKIDQSFIRDIAKDDKNEAIIKAIISMSHNLGLEVIAEGIEEP 633

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +  L R  C   Q      PL   +I++
Sbjct: 634 TQVDFLKRHRCQKGQGYLYNKPLPVETIVQ 663


>gi|241763102|ref|ZP_04761162.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
 gi|241367727|gb|EER61981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax delafieldii 2AN]
          Length = 812

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/569 (22%), Positives = 253/569 (44%), Gaps = 11/569 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           +          + +     +     S D ++  D     +   P    ++G ++ +  G 
Sbjct: 234 YSFRDITRQAEVQASLRLAAQVFDSSLDAIFIADSQHHLMRMNPGCERLVGPSAAAFLGC 293

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +   L     +   +F   + +    R G  + E  +      +  + +    + +  G 
Sbjct: 294 LAASLFGGGSD--ASFMEQVQAGWD-REGFWEGELWLPREGGAYCAVHLSWVALRDDEGR 350

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +++ IG   D+T Q  + + I   A+ D LTG+PNR     R+ T +  +   D     +
Sbjct: 351 LIQSIGFMRDLTLQHAAQKRIEELAYSDVLTGLPNRLLLTQRVDTAIQGARATDTG-FAI 409

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K IND LG   GD VL  +  R+   L+  D+L RL G+ F I L    +++
Sbjct: 410 LFLDLDRFKIINDSLGHPFGDRVLQLVAERLQACLRQTDMLCRLGGDEFVIYLHG-ADAV 468

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  +   +  P  L     ++  SIG A +        +++K A+ AMY  K RG
Sbjct: 469 VAESVARRILDDMLRPFLLDGMGFSIQCSIGMALYPQDGEGLDDLIKQADTAMYRVKERG 528

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 ++     +   R+ ++  +  A+    + + Y P + L+   IVG EALI+W  
Sbjct: 529 RGSYGFYQPQMNANLLMRMRLEHAMRQALGEQRMAVHYQPQVNLVTGRIVGAEALIRWTD 588

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G +  ++F+ +AEE   I  +  +++E+  R+   W  +    PI + +N+++ +  
Sbjct: 589 PEFGAVPPAQFVPLAEESGYIVTLGAWVMEQSVREAARWMHEG--MPIVVSVNVSALEFR 646

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +  E +  L++     P+ ++L  +E++++ + +     L  L  +G+ L +DDFGT 
Sbjct: 647 QADFVERLTRLLAVHHLPPTLLELELTETILLQDAQEMEQRLRALADLGVHLAIDDFGTG 706

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL  +P   +K + S + G    E   AI+ +II M + +   ++A+ +      
Sbjct: 707 YSSLAYLKKLPIHKLKIDQSFIRGLPEDEGDRAIVGAIISMGRALHIEVVAEGVETTTQR 766

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
             L +M C + Q    A  L      +LL
Sbjct: 767 AVLQQMECQHFQGFLCAPGLPGAEFRQLL 795



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 39/154 (25%), Gaps = 14/154 (9%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +          Q + +        +  + D +    +          +A I G+    +
Sbjct: 108 TMLDRSRQEATEQELETLLCELRATLDSAADGMLVCGLDGRVRAFNQRLAQIWGIPRDLL 167

Query: 446 HGPIRNWLPYIHIN------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                     +H +      D   +R  L +              +R        +  R+
Sbjct: 168 VQRNDA---AVHDHLAAQVLDGKGYRDRLAALEREPLLESTDILELRGG----VTLERRV 220

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            P     G  +  +    DIT Q +    +   A
Sbjct: 221 VPQL-HQGRPVGRVYSFRDITRQAEVQASLRLAA 253


>gi|330721091|gb|EGG99228.1| GGDEF/EAL-domain containing protein [gamma proteobacterium
           IMCC2047]
          Length = 724

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 225/436 (51%), Gaps = 7/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++ + E IL  A  D+LT +PNR +F++RL  +L  +      R  V+ ID+D +K +N
Sbjct: 272 DRQLTEEVILRQATTDSLTNLPNRAAFMERLQHLLYQAERSGE-RLAVIFIDVDNFKLVN 330

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD VL  + +R+   ++  DI+ RL G+ F + L   +++      A  + + 
Sbjct: 331 DQHGHAVGDYVLTVIAKRLIRCVRKNDIIGRLGGDEFIVALSDVSDAYAPEQVARNILRE 390

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           I   I+      T++ SIG + +         ++ +A++AMY AK  G N+ + F+  + 
Sbjct: 391 ITHEISKENNRFTMSCSIGISIYPDDAQVIDSLINHADVAMYRAKESGRNNYQFFKASMK 450

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +   ++  L  A+ N EL + Y PII L  + I  LEAL++W HP+ G +   +F+
Sbjct: 451 EDIENSSRLEMALRKAISNGELEVYYQPIILLASKRIYKLEALLRWRHPEMGLVMPDQFI 510

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  ++ F+L ++  D   ++ +       I +N +++   + +L   + A++
Sbjct: 511 PVAERSGLIVPMSEFVLAQVCDDYPRFKQRFTGLE-SISVNFSARQFRNEDLVSRVLAIV 569

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           S+       +++  +E++ + + + +    L  L  +G  L LDDFGT  S L YL  +P
Sbjct: 570 SERGVRCQSVEIEITENMFIEDHDLATIQTLHELSNLGFRLALDDFGTGYSSLGYLKKVP 629

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +   T     +A++ SII +A +    +IA+ +  ++    L + GCD++
Sbjct: 630 IDTLKIDRSFVRDLTEEPDDLALVCSIIELAHSFRLAVIAEGVESQLQEDILRKEGCDFV 689

Query: 936 QDSHVASPLGFNSILK 951
           Q  H A P+    +L 
Sbjct: 690 QGYHYACPMPAEKLLA 705


>gi|294142056|ref|YP_003558034.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328525|dbj|BAJ03256.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 684

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 217/430 (50%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +    NL+  ++ ID+D++K +ND L
Sbjct: 246 QTQSKLRKMATRDPLTGLPNRTLLLETVAVSIQRARVH-NLQFCMLFIDLDRFKNVNDSL 304

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  LV + + +  ++     +ARL G+ F I+    ++  + ADF   +   +  
Sbjct: 305 GHALGDQFLVRIAQVLERVVADKGTVARLGGDEFVILADEISSPDQAADFVEHLLFQLNS 364

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E  I   AS+G + +     ++ ++++++++AMY AK  G N    F+       
Sbjct: 365 PMQLNEHTIHPAASVGISIYPDDGKSAEDLIRHSDIAMYSAKAAGSNQWAFFKQQMTERA 424

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L Y P + +   ++V  EALI+W       IS   F+ +A
Sbjct: 425 AVRLRTEASLHDALKNNEFVLHYQPKLDIQTGKVVACEALIRWQ-KDGRLISPMSFIPVA 483

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E+  + I  W+++     + I +N+AS+   D  L   ++ L  + 
Sbjct: 484 EETGIIIPIGRWVIEQACKTIKEWQNKY-NFALPIAVNVASQQFEDPSLIPDIKQLSLRY 542

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +++  +E+ +M + E++   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 543 QIRPELLEIEITETSLMNDVEKAITKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 602

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T    K  AI  +I+ + K ++  I+A+ I  +  +  L    C   Q    +
Sbjct: 603 KIDRCFVTDL-PKESAIASTILMLGKQLKLNIVAEGIENQEQLDWLKANHCQMGQGFFFS 661

Query: 942 SPLGFNSILK 951
            PL  +   +
Sbjct: 662 KPLSQHDFEE 671


>gi|158321555|ref|YP_001514062.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141754|gb|ABW20066.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus oremlandii
           OhILAs]
          Length = 504

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/419 (28%), Positives = 208/419 (49%), Gaps = 6/419 (1%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PN+ S   R   +L            ++ ID+D +K +ND LG  +GD +LV +  
Sbjct: 87  LTNLPNKISLEKRFEEML---GRSPKENFNILCIDVDGFKMVNDTLGYEIGDQILVRIAE 143

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+ + +     L  + G+ F +++  E++  KI   +  + K++AM     E+EI +T S
Sbjct: 144 RLKKTINKEGELFHIRGDEFVLLIQKEDSMEKIQKLSETIIKAMAMSFVFSEKEIHLTVS 203

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAV 715
           +G A +       + +L+NA +A+  AK    +    +  S        ++   +L  A+
Sbjct: 204 VGIAGYPWGGSNLNLLLQNAHIAVQAAKESSKSKHLVYDDSMNIKMNRKLELINNLHKAL 263

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  E  L Y P I     EIVGLEAL++W +P  G +S +EF+ +AEE  +I  I  ++L
Sbjct: 264 EKKEFELYYQPQIDSETNEIVGLEALLRWQNPTLGRVSPAEFIPVAEETGLIIPIGDWVL 323

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +       +W+ +    PI + +NI++    +    + +  ++ +T  +P  + L  +ES
Sbjct: 324 KTACAQNATWQKE-GYKPIPVSVNISTIQFNEPLFVDKVVTILKETTLNPKWLHLEITES 382

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           V + +   +  +L RL+KIG+ + LDDFGT  S L YL     + +K + S +    E  
Sbjct: 383 VAINDATLTINVLNRLQKIGVKIALDDFGTGFSSLGYLSKFKINVLKIDSSFVQDIGEDE 442

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             I ++II + KN+   ++A+ +     +  L   GCD IQ    +SPL    I K+ K
Sbjct: 443 STITKTIIVLGKNLNMEVVAEGVETNEQLDYLKNAGCDIIQGYLFSSPLPAGQIEKMFK 501


>gi|218528574|ref|YP_002419390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
 gi|218520877|gb|ACK81462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/553 (23%), Positives = 252/553 (45%), Gaps = 25/553 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +R       + + +         V+     A ++G+   ++ G     L      D  
Sbjct: 248 ESDRLRSLANAAVEGLIVCTGDT-VVSANRSFAKLVGMPQNALAGTT---LSAYLPGDAA 303

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                L S +         E  ++ AD     + + ++P+    G     I +  D+  +
Sbjct: 304 RL--ALASQLERP-----VEAELKLADGGMVPVEVIMQPV-EYEGRPHYAIAV-RDLRAR 354

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I   A  D LTG+ NR SF  RL   +  +A     +  ++ +D+D++K++ND+
Sbjct: 355 RQAESQIQFLAHHDALTGLANRASFGQRLDQEM-RAADAGERKLALLCLDLDRFKEVNDL 413

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L S+ R +   L    ++ARL G+ F +++       +    A  + +++ 
Sbjct: 414 FGHAAGDAMLESVARIVTGELDDTQMMARLGGDEFAVLMP-CGGPSEAGRLAERILEALR 472

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
                      +  SIG A +    +  + +L  A+ A+Y AK  G      F       
Sbjct: 473 SGRADTGGP-QIATSIGVALYPDDALEQAALLSYADTALYRAKSEGRGTYRFFEARMGIE 531

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R +++ DL  AV   E++LVY P   +    ++G EAL++W HP+ G +S + F+ I
Sbjct: 532 VRERRVLEHDLRHAVARGEMHLVYQPQTDVGTGAVIGFEALLRWKHPERGYVSPAVFIPI 591

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  I  ++L    R+  +W       P+ I +N+++  +        +  ++ +
Sbjct: 592 AEESDVILQIGEWVLREACREAATWPQ-----PLTIAVNVSAVQIHSTHFVGLVHEVLLR 646

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P R+++  +E+ ++ +P R+ L L +L+ +G+ + +DDFGT  S LS L   PFD 
Sbjct: 647 TGLAPHRLEVEVTETALISDPNRALLTLRQLKALGLRIAMDDFGTGYSSLSNLRSFPFDK 706

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GS +    S E+  AI+RS++ + + +   ++A+ +  E ++  L    C   Q  
Sbjct: 707 IKIDGSFVRSVDSNEQTAAIVRSVLGLGRGLGLPVLAEGVETEAELGFLIAEQCHAAQGY 766

Query: 939 HVASPLGFNSILK 951
            +  P       +
Sbjct: 767 LMGRPSPIAQFTQ 779


>gi|291613765|ref|YP_003523922.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583877|gb|ADE11535.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 600

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 231/443 (52%), Gaps = 9/443 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +     I   A  D+LT +PNR  FLDRL   +  +  DD +   V+ +D+D++KK+
Sbjct: 151 SAMEHKDSQIKRIAHYDSLTALPNRLLFLDRLDQEVARANRDDQM-VAVLSLDLDRFKKV 209

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+  G  VGD +L ++ +++   ++  D +AR++ + F I+L     +    + A  +  
Sbjct: 210 NESFGHPVGDQLLQTVAKKLSSQIRACDTVARIADDEFAIVLTGVKATHAAGEVAQKILD 269

Query: 640 SIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           S A  PI++ + E+ +T SIG + +    + ++ +LK+A+ A++ AK  G N+ + + V 
Sbjct: 270 SFAHSPISISDSEVFITLSIGISIYPVDGVNTTALLKSADTALHQAKREGRNNFQYYTVQ 329

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +    +  + +L  A+  +E  L Y P + +   +IVG+EAL++W   + G ++ +E
Sbjct: 330 MNATSWQRLKLETELRQALARNEFELHYQPKVDMDCNKIVGMEALLRWQSAERGLVTPAE 389

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +I  +  ++L    +   +W+D   +P + I +N++S      +    +  
Sbjct: 390 FIPLLEETGLILPVGEWVLREACKQARAWQDA-GIPDVHIAVNLSSLQFRQPDFAGSVLK 448

Query: 817 LISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           ++ +    P+   I+L  +ES+++ N  R+   L  L + GI  ++DDFGT  S LSYL 
Sbjct: 449 IMQEHGLDPAMNGIELELTESLLLDNVARTIDTLNTLHEAGIRFSIDDFGTGYSSLSYLK 508

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P  ++K + S +   +      +I+ +II + +++  ++IA+ +       +L RMGC
Sbjct: 509 RFPISSLKIDQSFVQDLSSNRDDESIVSAIIALGRSLGLSVIAEGVETAEQSAQLRRMGC 568

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D +Q    + P+    +  LL+ 
Sbjct: 569 DGMQGYLFSRPVPVAEMTYLLQN 591


>gi|312134344|ref|YP_004001682.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           owensensis OL]
 gi|311774395|gb|ADQ03882.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           owensensis OL]
          Length = 563

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 216/438 (49%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LTG+PN+  F+  L   +  S      +  +++IDID + K+N+ L
Sbjct: 129 KNQEKIKELAYFDQLTGLPNKNHFMLTLEKTIKESNLKGQ-QFALILIDIDNFGKVNNTL 187

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  +  R+ E +     +ARL+G+ FGI++ S  +   +  F   +  S + 
Sbjct: 188 GHTTGDIVLKEIAHRLKESIGTNGFVARLTGDEFGIVVYSFPDLNILNYFIYKIFNSFST 247

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +++    +T S+G A + S    S+ +L NA+ A+  AK +G N    + +      
Sbjct: 248 SWEIMKYNFYITPSMGIAIYPSDGQDSTSLLTNADKALKIAKEKGKNTFCFYSLEMDNIL 307

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   DL  A+E  +  L Y PI+ L   ++ G E LI+W HP+ G I    F+ IA
Sbjct: 308 QQRLEFESDLRKAIEEEQFILYYQPIVDLKKIQLCGAEGLIRWIHPQKGIIPPMSFIPIA 367

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ ++  D+ + R+  N    +I  N + ++       + +   I  +
Sbjct: 368 EQTGLITQIGKWVVTKVISDLKNIREVVNY-NFYISFNTSLREFSSANFIDDVLYTIETS 426

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + +  +ESV M +P+ +   L  L++ G+ + LDDFG+  S L+YL  +P D V
Sbjct: 427 NIDPAYLGIEITESVAMADPQNTIKSLKTLKEKGMKVFLDDFGSGYSSLNYLKELPIDVV 486

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    +      I +SII ++  +E  ++A+ I      + L    CD+ Q   
Sbjct: 487 KIDRSFIANMNKDVKEQKIAKSIIDLSHILELKVVAEGIEDSQQAEILKSFECDFGQGYL 546

Query: 940 VASPLGFNSILKLLKERF 957
              PL  +  ++ L +RF
Sbjct: 547 FGKPLPKDQFME-LAKRF 563


>gi|288957004|ref|YP_003447345.1| signaling protein [Azospirillum sp. B510]
 gi|288909312|dbj|BAI70801.1| signaling protein [Azospirillum sp. B510]
          Length = 581

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 139/554 (25%), Positives = 260/554 (46%), Gaps = 16/554 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +      V   D  R  +   P    ++G       G       ++    +     
Sbjct: 27  LRQILEAMTVKVALLDTQRRYIYANPAYLEMVGTTLDKAVGTTLG--QFMGPELQRGSLA 84

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             +  +      +Q E  +   D Q  +++    P    +G I  Y  I  D+T++++  
Sbjct: 85  RAERALAGET--VQTEGWITQTDGQQRYLMRMHAPYRLGDGSIGGYFVILQDVTDRRQMQ 142

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A+ D +TG+ NR   L  +        +      T++++DID++ +I   +G  
Sbjct: 143 DDLFRLAYYDPVTGLANRLMLLKHMADY-----SGMGEPFTLVILDIDRFAEIRSSMGQG 197

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             +++L  L +R+       D++AR+S + F ++     +   +      +   +    +
Sbjct: 198 FANELLDGLAQRMAARATAFDLIARVSDHAFAMLAGGACDRPVLESAIDDLAAVVRSARS 257

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704
                + ++ASIG A  T S     ++L++AE+A   A+ +GG     F  +      ++
Sbjct: 258 SSGGTVFLSASIGVAVATPSHERPDDVLRDAEIATARAREQGGGRQAWFDPAMQSHVVEQ 317

Query: 705 VMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           V ++ DL  A V  ++L++ Y PI+ ++   + G EAL++W+HP+ GNI    F+ IAE 
Sbjct: 318 VRLEHDLRGALVSGNDLWVAYQPIVEMVTGGLAGFEALMRWNHPERGNIPPGIFIPIAES 377

Query: 764 LCMIKAINLFMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
             ++ ++  ++L +    I  W+   +    P+F+ +N++S  L D    + ++ ++ +T
Sbjct: 378 TGLVLSLGTWVLRQACLQIAEWQDRREPGSAPLFMSVNLSSHQLSDPNFVQVVREVLRET 437

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS IKL  +ES VM   E+S  LL  LR +GI L++DDFGT  S LSYL  +P D++
Sbjct: 438 GVEPSWIKLELTESAVMDKAEQSIRLLRDLRALGIKLSIDDFGTGYSSLSYLHKLPIDSL 497

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++     E+  AI+R I+ +A+ +   +IA+ I    D   L  + CDY Q  H
Sbjct: 498 KVDRSFVSAMHQSEENRAIVRIIMDLARLLGFDVIAEGIETSADANLLRALACDYGQGYH 557

Query: 940 VASPLGFNSILKLL 953
            A PL  +   KL+
Sbjct: 558 FARPLPPDQAGKLV 571


>gi|87119333|ref|ZP_01075231.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86165724|gb|EAQ66991.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 672

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 141/598 (23%), Positives = 270/598 (45%), Gaps = 14/598 (2%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHV----LATGYFSQGIFSDGERQSLAVLGS 414
           T        Q A    L + +   G    Q+     +     SQ       +        
Sbjct: 76  TGFSTGGGWQYADTLFLHMSLSPYGLEGEQNAILGLVEDVSESQIECVKNAQYKAVFDSI 135

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            + V    +        P  + I G ++  M G   + L   H +D+  +  +       
Sbjct: 136 KEGVLLAGVDSKIKAVNPAFSDITGYSAAEMLGRNPSMLSSGH-HDKAFYTKVYKDLYE- 193

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             G+ Q E   +  +   +     I  + N  G++  ++ I +DIT QK  LE I   A 
Sbjct: 194 -LGQWQGEVWNKRKNGSLYVQWQTITALKNDAGEVDEFLAIFSDITHQKARLEAIEFRAN 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+PNR  F + +   L  S   +  +  +M +D+D +K+IND LG +VGD +L  
Sbjct: 253 FDHLTGLPNRAYFHELMANQLVKSCK-EKSQCALMYLDLDNFKRINDTLGHSVGDSLLKE 311

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +++ I +++   + LARL G+ F +++       ++ + A A+  ++ +P  +    +  
Sbjct: 312 VSQVISKVIGAKNTLARLGGDEFVVMVPCFKQISELEEVAQAIVDALKVPFVIGANLVHT 371

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
            ASIG A    +  +  E+L+ ++LAMY AK +G         ++S        ++ +L 
Sbjct: 372 GASIGIALS-RNVESVEEILRLSDLAMYKAKEQGKGRFVFHTGQMSDDVQAARNLELELR 430

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            ++ N ++ + + PI+ +  + ++G EAL +W       +S   F+  AEEL +I+A+  
Sbjct: 431 KSIANRDIRVAFQPIVDIATKAVLGYEALARWTTSSGQVVSPDVFVACAEELGLIQALFE 490

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +  ++    +  ++Q +   I++ IN++   +      + M + ++    +P  I L  
Sbjct: 491 VVYTKVLEGFLDLQNQ-HAKDIYVSINLSCYQIPSLLSVDWMTSQLAYYQLAPGNIILEI 549

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +   +RL L ++R+ G  L LDDFGT  S L+YL  IP D +K +   +    
Sbjct: 550 TEGVLLKDSVNTRLWLEKVREAGYRLALDDFGTGFSSLAYLKSIPVDILKIDRRFVADIA 609

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             E  +A++ +I+ +A+     +IA+ +  E   + L R+GC   Q  +   P     
Sbjct: 610 NDESDLALVSAILAIAEAFSIRVIAEGVERECQRQVLGRLGCGLAQGYYFGRPTEVEQ 667


>gi|308187368|ref|YP_003931499.1| hypothetical protein Pvag_1865 [Pantoea vagans C9-1]
 gi|308057878|gb|ADO10050.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 728

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 215/434 (49%), Gaps = 12/434 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  AF D LTG+PNR    DRLT  L L+  +D  R  +++ID+D++K +ND  G 
Sbjct: 292 EAQAQHLAFHDVLTGLPNRALVEDRLTQALALATRNDQ-RVALLLIDLDRFKAVNDTHGH 350

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD++++++ +R+  +++  D + R+ G+ F +++   +N  ++   A  M   +A P 
Sbjct: 351 HAGDELIIAVAQRLNRIVRASDTVGRIGGDEFIVVMPEVDNIGQVNSLAQRMIDELAQPF 410

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            L   ++   ASIG A      I   E+++ A++A+Y AK  G      F  +       
Sbjct: 411 TLFGSDVWSGASIGLALAPKDGIDRLELMRKADIALYEAKSGGRGRFRQFERAMDESVQT 470

Query: 704 RVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           R  I  DL  A++  + L + Y P++ +  +++VG+EAL++W HP  G I+  EF+ IAE
Sbjct: 471 RQTIAADLRTALQTRQGLEVWYQPLMDVGGQQMVGIEALLRWHHPTRGLIAPGEFIAIAE 530

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L         +      P + + +N++          + +  ++S+  
Sbjct: 531 ETGLIIPLGEWVLAEACATQQRF------PDLLVAVNVSPVQFRSTGFVDHVMTIVSQHG 584

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R++L  +E V++ +   +R ++  LR+ G  + LDDFGT  S L+YL   P D +K
Sbjct: 585 GDPKRLELEITEGVLIEDEREAREIIVSLREAGFRIALDDFGTGYSSLNYLSTFPVDKIK 644

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S     G  E  +AI+ S++ +   +   + A+ +     +  L   GC+ +Q    
Sbjct: 645 IDRSFTQSLGVAENSVAIVESVVKLGHAMGLMVTAEGVETAGQMSALADAGCNQLQGYLF 704

Query: 941 ASPLGFNSILKLLK 954
           +  +  + +  L+ 
Sbjct: 705 SQAVPADQLAALMT 718


>gi|153010456|ref|YP_001371670.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151562344|gb|ABS15841.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 658

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/453 (27%), Positives = 225/453 (49%), Gaps = 13/453 (2%)

Query: 505 SNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++G + R        T E +     +  +A  D LTG+PNR  F   L   L+ +A   +
Sbjct: 197 AHGSMQRLTSDLRQATGELQSQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLE-AAQTGS 255

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D +K +ND LG  VGD +L ++ RR+ +L +  D++ RL G+ F ++   
Sbjct: 256 QSAIILLLDLDGFKDVNDTLGHDVGDALLQAVARRLTKLGERGDMVCRLGGDEFAVLSTG 315

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +   A  +   I+ P ++ E EI +   +G A  +  +  + E+ K+A+LA+Y 
Sbjct: 316 LREEEALE-LADRLMDVISQPYHVGELEIKIGTCVGVA-ISEGEPDTEELFKHADLALYE 373

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G  H   F+        ++   + DL  A+EN E+ + Y P    +  EI G EAL
Sbjct: 374 AKALGPGHASVFKSQMQTRLREKKSFEADLQKALENGEMEVYYQPQACTITREICGYEAL 433

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S  EF+ +AE++  I A+  ++L+    +   W       P+ I +N++
Sbjct: 434 LRWTHPIRGAVSPVEFIPVAEKIGFIHALGDWVLKTACLEAAHWNK-----PLKIAVNLS 488

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                   L + +   + ++    +R++L  +ESV++   E++   L +L+ +GI + +D
Sbjct: 489 PVQFRSLNLIQSVIDALEQSGLEANRLELEITESVLLDKNEQTLSTLRQLKALGIQIAMD 548

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L   PFD +K + S +   T     +AI+  +  + +++    IA+ I 
Sbjct: 549 DFGTGYSSLGSLSGFPFDKIKIDRSFVRDVTTRPDALAIVELVTGVGRSLRMVTIAEGIE 608

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            E   + L R+GCD +Q   +  P+  + +  L
Sbjct: 609 TEEQFECLKRLGCDQVQGYLIGRPMPASKLKHL 641


>gi|77362163|ref|YP_341737.1| putative orphan protein; putative sensory box protein
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76877074|emb|CAI89291.1| putative orphan protein; putative sensory box protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 746

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 126/510 (24%), Positives = 239/510 (46%), Gaps = 17/510 (3%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN---SNGDILRYIGIA 516
           D +   +I+   +   + +L YE+ +       H    R   ++N      +    + + 
Sbjct: 238 DPNKVISIITKTLKTEQVQL-YEYELNCM-GNRHIFEARTSIINNYLLDEPNKKHVLWMI 295

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE+K + E +    F D LT +PNR+   D L  ++  S    +   T++ +D++ +
Sbjct: 296 RDITERKLAEEQVKELVFYDPLTTLPNRRMLTDTLELMISESKKQLSF-GTLLFLDLNDF 354

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIA 631
           K+IND LG  +GD+VL+ +  R+  ++K   I+AR+ G+ F I+    ++       +  
Sbjct: 355 KRINDSLGHVIGDEVLLEVAMRLKTVIKNAGIIARIGGDEFVILPKHLSSNKNNAQSQAI 414

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +      P  +      +T SIG +       TS+++LK A+ AMY AK  GG+ 
Sbjct: 415 VCAKQILDCFKNPFKISNCSYKITVSIGISFIEGPDTTSNDVLKRADTAMYSAKKFGGHR 474

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +          R+ ++ D+  A++  +    + P +      I+  EALI+W HP  
Sbjct: 475 FAFYDPALQHELDLRLQLESDIITAIKEKQFAAYFQPQLDCQ-GNIIAAEALIRWIHPIK 533

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDN 808
           G IS   F+ +AE+  +I  +   +L      I +  + Q       + INI++   + +
Sbjct: 534 GIISPYYFIPVAEQSGLIDQLQSSVLFDACMLIKTLEQTQQLHDSFCVAINISACQFITH 593

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L   + +++     SP+R KL  +ES+++ +   +   + +L+  G   ++DDFGT  S
Sbjct: 594 SLYNNIVSIVDAFGISPTRFKLEITESILLDDMAENIAQMQQLKAKGFRFSIDDFGTGYS 653

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+Y+   P D +K + S +    E     AI+ +II +A N+   +IA+ +      K 
Sbjct: 654 SLAYIHTYPVDELKIDKSFIDKIHEGNRGSAIVSTIISLAHNLGFNVIAEGVETAEQAKT 713

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           LT++    +Q  ++A P+     +  LK++
Sbjct: 714 LTQLNITGMQGYYMAYPMPAAEFISWLKQQ 743


>gi|312128418|ref|YP_003993292.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778437|gb|ADQ07923.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 586

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 213/436 (48%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LT +PNR  F+  L   +  +      +  ++ IDID + KIN+ L
Sbjct: 152 KNQEKIKELAYFDQLTNLPNRNHFMLVLEKAIKDA-HFKGQQLALICIDIDNFGKINNTL 210

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL  + +R+ + +     +ARL+G+ FGII+ +  +   +  F   +  S +M
Sbjct: 211 GHATGDVVLKEIAQRLKDTVGNNGFVARLTGDEFGIIIYNFLDFNVLNYFIYKIFNSFSM 270

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              ++E +  +T S+G A + S    S  +LK+A+ A+  AK +G N    + +      
Sbjct: 271 SWEIMEYDFYITPSMGVAIYPSDGQDSVSLLKSADKALNLAKEKGKNTFCFYNLEMDNIL 330

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   DL  A+E  +  L Y PI+ L   ++ G EALI+W HP+ G I    F+ IA
Sbjct: 331 QQRLEFESDLRKAIEKDQFVLYYQPIVDLEKMQLCGAEALIRWIHPQKGIIPPMSFIPIA 390

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L ++  D+ S R+       +I  N + ++       + +   I   
Sbjct: 391 EQTGLISQIGQWVLAKVIADLKSIREVT-NHNFYISFNASLREFSSANFVDNVLYTIEAL 449

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + +  +ESV M +P+ +   L   ++ GI + LDDFGT  S L+YL  +P D V
Sbjct: 450 KGDPTSLGIEITESVAMADPQNTIKSLNTFKEKGIKVFLDDFGTGYSSLNYLKQLPIDVV 509

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   +       I +S+I ++  ++  ++A+ I      + L    CD+ Q   
Sbjct: 510 KIDRSFIANMSTDTKEQKIAKSLINLSHILDLKVVAEGIEDSQQAEILKSFECDFGQGYL 569

Query: 940 VASPLGFNSILKLLKE 955
              PL  +  ++  K 
Sbjct: 570 FGKPLPKDQFIEFAKR 585


>gi|114562966|ref|YP_750479.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334259|gb|ABI71641.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 757

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/585 (21%), Positives = 258/585 (44%), Gaps = 23/585 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSM 445
              LA+    +      +R S          +   +     ++  P    +         
Sbjct: 174 AARLASLAIERSRGMHIQRLSNNIFNNLPMALVITNKDNSVLSANPKFEMLTTSYNKDLK 233

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              ++ +L             + ++         + E R   +DN   ++ + +  + +S
Sbjct: 234 LFDVQRFLSQSAPE---KVADLFNTISHG--HAWKGEMRGLRSDNDIIYIDLTVTVIRDS 288

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                 Y  +  DI+ +K + + I   A  D+LTG+ NR+   ++L  +++ +   +++ 
Sbjct: 289 FTQQNCYAWLITDISARKHAAKTIDFQANHDHLTGLVNRKYLFEQLQIMIEATHEQEHIS 348

Query: 566 --PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              +++++++D +K+IND LG   GD VL  L +R+ + +    +L+R+  + F ++L  
Sbjct: 349 QSFSLLLMNLDHFKQINDSLGHDCGDAVLQKLAKRLLQNIPDNALLSRIGADEFVLLLPG 408

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +  + + A  +   ++  + + ++ + ++ SIG + +        ++L  A  AMY+
Sbjct: 409 RIEADTLMELARKLSDILSNNMTVADQNLMLSMSIGLSRFPDDANNVEQILNCASQAMYN 468

Query: 684 AKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N  E F     ++      +   L  A+ N+E  L Y PI+     +I+  E L
Sbjct: 469 AKAKGRNCFEFFNDKIQQAAERTAQVHLHLKNAISNNEFELFYQPIVNPFTGQIIKAEVL 528

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W H     IS  EF+ IAEE  +I  I  ++  +     I  +      P+ + IN++
Sbjct: 529 LRWLH-DGQFISPEEFIPIAEESGLIVQIGEWVRTQAVVCAIELQQ--RQLPLPLSINVS 585

Query: 802 SKDL----LDNELCEGMQALISKTLY---SPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           + +     L         ++  +          + L  +ES++M       LLL  LR+ 
Sbjct: 586 TIEFWSNELQQRFLNYFDSIQQQFDLTVFPYELLTLEITESLMMKQQSNINLLLEELRRR 645

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           G+++++DDFGT  S LSYL   P D +K + S +      E+  AI+ +I+ M++ ++ +
Sbjct: 646 GLNISVDDFGTGYSSLSYLVNFPVDQIKIDKSFIKKIAQGERHKAIIEAIVSMSRALDLS 705

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +IA+ +  + ++  +     D +Q  +   P+  N  L LL E+ 
Sbjct: 706 VIAEGVETQAELDFIKEQQIDAVQGYYFYKPMPKNDFLTLLAEQQ 750


>gi|254524937|ref|ZP_05136992.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14]
 gi|219722528|gb|EED41053.1| hypothetical protein SSKA14_4077 [Stenotrophomonas sp. SKA14]
          Length = 710

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 216/437 (49%), Gaps = 7/437 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    + + +   A  D LT +PNR     R+   L  +      R  VM +D+D +K++
Sbjct: 256 TSLTDAQQELTQAALHDPLTRLPNRLLLQRRIVQALAEA-EQGGNRFAVMFMDLDGFKQV 314

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +LV++  R  +LL+  D+LARL G+ F +++  E++   +   A  + +
Sbjct: 315 NDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIEHD-EDLPTLARRILQ 373

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           ++     L + E+ VTASIG A       +  +++  A+ AMY AK  G N    F   +
Sbjct: 374 AVGSGPLLPDNELQVTASIGVAICPDHAASERQLMAFADAAMYQAKESGRNAFVLFADWM 433

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     +  +  DL  A+ + +L+L Y P IR+  +++ G EALI+W HP+ G I    F
Sbjct: 434 NDSAEQQFRLLADLRRAIGSDQLFLNYQPKIRVATQKVAGAEALIRWRHPEHGLIPPDRF 493

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    I  I  + L++  + +  W D        + +N++        L + ++ +
Sbjct: 494 IRLAERSGAINDIGRWALDQACQQLRRWHDA-GHEGWSMSVNLSPVQFSSPHLLQDVRTV 552

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +   +P  + L  +ES VM + + S  LL  L  +G+ +++DDFGT  S L YL  +P
Sbjct: 553 IERHAIAPRHLVLEITESTVMRDTDTSLRLLQALSALGVGISIDDFGTGYSSLLYLKRLP 612

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + + +     + + + I+ +I+ +   ++  I+A+ +        L R+GCDY+
Sbjct: 613 ATEIKIDHAFVRDLEHSAEDVVIVSAIVALGHALDMDIVAEGVETAAQRAYLERLGCDYL 672

Query: 936 QDSHVASPLGFNSILKL 952
           Q   +  P+     ++L
Sbjct: 673 QGYLLGRPVDAARFMQL 689


>gi|190574226|ref|YP_001972071.1| putative transmembrane GGDEF EAL domain signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012148|emb|CAQ45771.1| putative transmembrane GGDEF EAL domain signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 711

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 217/437 (49%), Gaps = 7/437 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    + + +   A  D LT +PNR     R+   L  +      R  VM +D+D +K++
Sbjct: 256 TSLTDAQQELTQAALHDPLTRLPNRLLLQRRIVQALAEA-EQGGSRFAVMFMDLDGFKQV 314

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +LV++  R  +LL+  D+LARL G+ F +++  E++   +   A  + +
Sbjct: 315 NDAYGHQAGDALLVAVAERTRQLLRPHDMLARLGGDEFVLVVRIEHD-EDLPTLARRILQ 373

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           ++     L + E+ VTASIG A       +  +++  A+ AMY AK  G N    F   +
Sbjct: 374 AVGSGPLLPDNELQVTASIGVAICPDHAASERQLMAFADAAMYQAKESGRNAFVLFADWM 433

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           ++    +  +  DL  A+ + +L+L Y P IR+  +++ G EALI+W HP+ G I    F
Sbjct: 434 NNSAEQQFRLLADLRRAIGSEQLFLHYQPKIRVATQKVAGAEALIRWHHPEHGLIPPDRF 493

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    I  I  + L++    +  W D        + +N++        L + ++A+
Sbjct: 494 IRLAERSGAINDIGRWALDQACLQLRRWHDA-GHEGWSMSVNLSPVQFSSPHLLQDVRAV 552

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +   +P  + L  +ES VM + + S  LL  L  +G+ +++DDFGT  S L YL  +P
Sbjct: 553 IERHNIAPRHLVLEITESTVMRDTDTSLRLLQALSALGVGISIDDFGTGYSSLLYLKRLP 612

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + + +     + + + I+ +I+ +   ++  I+A+ +        L R+GCDY+
Sbjct: 613 ATEIKIDHAFVRDLEHSAEDVVIVSAIVALGHALDMDIVAEGVETAAQRAYLERLGCDYL 672

Query: 936 QDSHVASPLGFNSILKL 952
           Q   +  P+     ++L
Sbjct: 673 QGYLLGRPVDAARFMQL 689


>gi|293606971|ref|ZP_06689316.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii
           ATCC 43553]
 gi|292814631|gb|EFF73767.1| sensory box/GGDEF/GAF/EAL domain protein [Achromobacter piechaudii
           ATCC 43553]
          Length = 935

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 137/562 (24%), Positives = 257/562 (45%), Gaps = 15/562 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      +G+ +   D     V      + I G A   + G     L    
Sbjct: 255 RRSAEELRLAAKVFEHAGEGILVTDAQGHIVNVNRAFSVITGYAREEVMGQTPRLLESDR 314

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++T+  +   +       E   R  +      ++ I  + +  G+I  Y  + +
Sbjct: 315 YDD-EFYQTVWQALREH--DYWHGELWCRRKNGSQFAALLTISAVPDMRGNIEHYAAMFS 371

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K++ + +   A  D LTG+PNR    DRL   +  +     +   V++ID+D +K
Sbjct: 372 DITALKENQQQLERVAHYDLLTGLPNRLLLGDRLKQAIAQTRRR-GMHLVVVLIDLDGFK 430

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND  G AVGD +L  L+RR+ ++L+  D LARL G+ F  +L+   +          +
Sbjct: 431 KVNDQHGHAVGDKLLSVLSRRMTQVLREGDTLARLGGDEFVAVLVDLPDISLSVPILDRL 490

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +  A P+ + +    V+ASIG + +  ++   + ++L+ A+ AMY AK  G N    F 
Sbjct: 491 IEVAAQPVPIGDALCEVSASIGVSYYPQAEDIDADQLLRQADQAMYFAKQAGKNRYHVFD 550

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R+ R+  +  + +  A+ N +  L + P + +   E++G EALI+W HP  G +S 
Sbjct: 551 TEKDRTLRLRHEGLDSIENALANGQFLLYFQPKVNMRTGEVLGAEALIRWQHPARGLLSP 610

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ + E   +  A+  + +E     I  WR      P  I +NI ++ LL  +    +
Sbjct: 611 ASFLPLIENHPLGIAVGKWTIEAALTQIEIWRKAGLNVP--ISVNIGAEHLLQPDFIMHL 668

Query: 815 QALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + ++S+     P  ++L   E   + +  +   ++    ++G+   LDDFG+  S L+YL
Sbjct: 669 RGMLSRHPGAQPQDLELEILEISAVEDFVQVSQVMALCERMGLRFALDDFGSGYSSLTYL 728

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +   +         IAIL +++ +A++     IA+ +      + L R+G
Sbjct: 729 KRLPAYLLKIDQGFIRDMLEDPDDIAILDALLALARSFGRNCIAEGVESIKHGEMLLRLG 788

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C++ Q   +  P+  +   + L
Sbjct: 789 CEWGQGYAIGHPMPVHEFEQWL 810



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 8/154 (5%)

Query: 385 TVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILG 439
             ++ +       Q + S   +R+ LA     D+++ +    D        +  I  I G
Sbjct: 115 GTVEDITDLKRIEQALNSMRLQREELA-SHVPDMLYQYRLRPDGSSHFPYASARIQEIYG 173

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +A   +          +H  DRD     + +  G        E+RV+  D +  W+    
Sbjct: 174 VAPEDVVEDATPAFAALHPEDRDRVHETIQAS-GQSLALWHDEYRVQFPDGRVIWVEGEA 232

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            P +  +G IL + G  +D+T +++S E +   A
Sbjct: 233 SPEAMPDGSIL-WHGYIHDVTSRRRSAEELRLAA 265



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +    W  D+    +T + +   +LGL  G+       +L  IH  DR  F    D+ 
Sbjct: 17  QNAHSGSWHLDLGSQLLTCSDEACRVLGLDVGAPIA-FERFLQCIHPEDRPLFDRAWDAA 75

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE---- 527
           +  +   L   +R+  +  Q  W+ +R     +++G      G   DIT+ K+  +    
Sbjct: 76  MCGK--SLDLRYRIV-SGGQVRWIHLRATFKGDASGRPRAADGTVEDITDLKRIEQALNS 132

Query: 528 ---GILCNAFQ 535
                   A  
Sbjct: 133 MRLQREELASH 143


>gi|187926641|ref|YP_001892986.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|241666153|ref|YP_002984512.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D]
 gi|187728395|gb|ACD29559.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|240868180|gb|ACS65840.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D]
          Length = 670

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 220/455 (48%), Gaps = 26/455 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F +RL   L  +         ++++D+D +K +ND L
Sbjct: 190 QAEAHLDYLAHIDSVTELPNRHAFNERLQVSLKRAGQTG--AVGLLLLDLDNFKVVNDTL 247

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIAD-------- 632
           G   GD +L  + RR+ ++++      +L R+ G+ F +I      +             
Sbjct: 248 GHNNGDRLLRQVARRLNDVIEQANLRAVLCRIGGDEFAVIAELSGRAQIAETEAATLADG 307

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++  P +L   +I VTAS+G + +         + +NA+ AMYHAK+ G N  
Sbjct: 308 LAKRILAALGAPFSLDLHQIYVTASVGVSLYPHDARDVQVLTRNADTAMYHAKNHGKNAA 367

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE----------EIVGLEA 740
            SF     +  R  +  + DL  A++  EL L Y P +RL  +           + G+EA
Sbjct: 368 ASFTSEMDQQARRRLRVEADLRRALDREELLLAYQPQVRLSTDDAHDAVISRANVYGVEA 427

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  + L++L    +  + W  +     + + +N+
Sbjct: 428 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGLWVLRTACQQAVRWMREDG-VTLRVAVNL 486

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++   D  L E +  ++ +T   P +++L  +ESV+M + E +  LL  L   GISL++
Sbjct: 487 SARQTRDPALVENVMDVLRETGMPPHQLELEITESVLMEDIEANIALLESLHAAGISLSI 546

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K + S +        AI  ++I MA ++   ++A+ +  
Sbjct: 547 DDFGTGYSSLAYLQRFPIQKLKIDRSFVQRMPGDGEAIAGAVIAMAHSLRMQVVAEGVED 606

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +  L   GCD  Q    + P   ++++  L  
Sbjct: 607 PEQLALLRDAGCDLGQGYLFSRPQQADALMAWLNR 641


>gi|218890494|ref|YP_002439358.1| hypothetical protein PLES_17541 [Pseudomonas aeruginosa LESB58]
 gi|254236275|ref|ZP_04929598.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168206|gb|EAZ53717.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770717|emb|CAW26482.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 783

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 284/696 (40%), Gaps = 57/696 (8%)

Query: 279 HAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
           H ++     +      I    F     +    A    + +  + L       Y  M    
Sbjct: 113 HPRLWQWIGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLAMYMTA 172

Query: 336 RAVLLIPAWILIF--IWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           R    +   +L    I      M  T       +        L  + +LI        LA
Sbjct: 173 RPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALA 232

Query: 393 TGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              + +G  S   R      SL + G+                        G+A+  +  
Sbjct: 233 AVPYLRGRRSARYRYMKLIASLLLAGAI-----------------AAMHFTGMAALVLSV 275

Query: 448 PIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           P    L      D         +L S +                     W     +    
Sbjct: 276 PAGTPLELQASADSLRLGWLTGVLASAIAACG----------------IWAAWSEKQRER 319

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +  R   + N +     +   +   A  D+LTG+ NR +F +     L+        
Sbjct: 320 RLSENSRVNALLNQLD---HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG 376

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +D+D +K+IND LG   GD +L  ++ RI  +L+  D++AR +G+ F  +L   
Sbjct: 377 -LAVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEF-CVLADL 434

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    +  + + +  PI L  R + +TAS+G + + +      E+LKNA LA++ +
Sbjct: 435 TQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQS 494

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N+ + F        +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL+
Sbjct: 495 KACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALV 554

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +    F+ +AE   MI  ++ ++L R  RD+ S    A    + + +N  +
Sbjct: 555 RWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCA 613

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +L    L + ++  + +   +   ++L  +E  +M N +++  LL RLR++G+SL++DD
Sbjct: 614 SNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDD 673

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +     +++ + I ++II MA+ +   ++A+ +  
Sbjct: 674 FGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVET 733

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L    C+ +Q    + PL   ++ + L+  
Sbjct: 734 PQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAY 769


>gi|90418413|ref|ZP_01226325.1| possible signaling protein with EAL domain [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338085|gb|EAS51736.1| possible signaling protein with EAL domain [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 828

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 146/677 (21%), Positives = 268/677 (39%), Gaps = 55/677 (8%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
              +         + A +    I +      +   +    R V  +   +   I    + 
Sbjct: 172 AVAVGAIESARLRNFAGLAAILIGMAGFAVFLSRSVGASLRRVSGLARNLASGIECDMIE 231

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                 +  D++            +         ++A       + +  ++ + A+    
Sbjct: 232 ARGPSEV-RDVLNALRQMQEHCEKLETMMLDKVDLMAGR-----LDTQQDQLTAALNNMT 285

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHG----PIRNWLPYIHINDRDNFRTILDSF 471
             +   D  +  +        + G      +             +  ND         S 
Sbjct: 286 QALCMLDGQKRMILCNETFTELFGDHPAGTNARDFFTDARLTGRVAPNDTA-------SH 338

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +         E + R                          +    DITE++     +  
Sbjct: 339 IQEVGEGQIMEVKRRGMSGD-------------------GLLITFEDITEREAIARRLQH 379

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D LT +PNR  F + L   L           T+ VIDI  +K IND  G  VGD +
Sbjct: 380 LSGHDALTELPNRGVFAEILDEALGK----GRKALTIAVIDIRGFKTINDTYGHPVGDAI 435

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L     R+ E       +ARL GN F +IL+   ++    D A +M  S   P  +  R 
Sbjct: 436 LRQCGARLIEKAGTKATVARLGGNEFAVILLGGRSAADAEDLARSMVASFDEPFEVEGRH 495

Query: 652 ITVTASIGFASWTSSKI----TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705
           I+   S+G       K      ++  L+N +LA+Y AK   G+    F+ S  +    R 
Sbjct: 496 ISAAGSVGALYVAGGKRPVDLDAAIALQNCDLALYQAKQSAGSSYRMFQPSMRQKLQQRR 555

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A+E  +  L Y P +      I G EAL++W+HP+ G +S S F+ +AEE  
Sbjct: 556 ELEIDLQKAIEEGQFELFYQPFVDTGRRAISGFEALLRWNHPERGRVSPSTFIPLAEETG 615

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           MI  I L+ LE       +W     +  + I +N+++       L   ++ +++K+   P
Sbjct: 616 MITPIGLWALETACEQASNW-----VSDLAISVNLSAVQFKSPTLVADVRRVLAKSGLQP 670

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           SR+++  +ES+ +   ++   +L   R++G+++++DDFGT  S L YL   PFD +K + 
Sbjct: 671 SRLQIEVTESLFLDEGDKVLSILTEFRRMGLTISMDDFGTGYSSLGYLNRFPFDKIKIDQ 730

Query: 886 SLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           S +   +  + IAI+RS+I ++  ++  +IA+ I     ++ L   GC  +Q  + + P 
Sbjct: 731 SFVRDMSRPENIAIVRSVIGLSNALDMRVIAEGIETPEQMRILYAEGCREMQGYYFSRPR 790

Query: 945 GFNSILKLL---KERFP 958
             + + K+L    +R+P
Sbjct: 791 PASDLPKMLVEIADRWP 807


>gi|297617322|ref|YP_003702481.1| diguanylate cyclase/phosphodiesterase with GAF sensor
            [Syntrophothermus lipocalidus DSM 12680]
 gi|297145159|gb|ADI01916.1| diguanylate cyclase/phosphodiesterase with GAF sensor
            [Syntrophothermus lipocalidus DSM 12680]
          Length = 1024

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/812 (18%), Positives = 317/812 (39%), Gaps = 59/812 (7%)

Query: 174  YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
             + E       +    +Y  I +  +    +F  + Y V    + +        +L    
Sbjct: 240  RIAETGHILSEIQRRQVYFFIGV-ASGAGGVFNLLLYFVWGVDLQV--------MLWISL 290

Query: 234  IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
            + F     +++LP   L      + +A   +  +F   Y     +   +          +
Sbjct: 291  VMFACCLLVLSLPFLPLPSGVQDTVMAAVVAGFVFSMTY-----YTKNINAANIVWSFPL 345

Query: 294  AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
             ++     +          +         T   ++  +   E  V        I ++  G
Sbjct: 346  LLMLTACVFSARRI-----LITIVAAAVVTELWLWLELPRKELTVGPFEHMSRIIVYLFG 400

Query: 354  LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
             + A    L N I    L      + +    + +    AT    +   +  ++   A+  
Sbjct: 401  AFFA---FLVNRIYMQRLQENEEQVGLQQVISSMSADFATVSA-ENFDTKVDK---ALET 453

Query: 414  SGDIVWDWDIVRDRVT--TTPDIATILGLASG---------SMHGPIRNWLPYIHINDRD 462
             G  ++  D+    +               +                 +WL       + 
Sbjct: 454  IGK-LYRADLAHLVIFSEYNKSAVRAYEWRADSTDPSSTPFDQRDSYHSWLTEQLKEKKR 512

Query: 463  NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM---------SNSNGDILRYI 513
             F   ++          +             ++    RP+          ++        
Sbjct: 513  LFMPDIERVPELPPESKKLLLACGTKSMLAVYLESSHRPIGYLEIQALSQDAQWRADHLE 572

Query: 514  G--IANDITE----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               I  +I      + KS + +   A+ D LTG+PNR    D L   +  +A        
Sbjct: 573  TLQIIANILAHAFARIKSEQEVYRLAYYDYLTGLPNRFLMWDLLEQAVSTAAA-KGTSVG 631

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +++ID+  +K+IND +G   GD +L  + + I + ++  D++ R  G+ F +++      
Sbjct: 632  IILIDLHSFKEINDTIGHEAGDMLLKKIAQSITDCVRPGDVVCRFGGDEFVVVMTGVTAY 691

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              ++D A  + +++  P+ +  +E  V ++ G + +        +++KNA+LAM  +K R
Sbjct: 692  NVLSDTAERIIEAVRKPVMIHNQEFFVNSNAGISVYPLDGKNPEDLVKNADLAMNASKER 751

Query: 688  GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G N    +        +    +   L  A+E  EL L Y P + ++   I G+EALI+W+
Sbjct: 752  GTNRYAFYSREMRGEIQQKTILINGLYRALEKQELLLYYQPQVDILTGRITGVEALIRWN 811

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP  G +  S F+ +AE+  +I +I  ++L         W+D   +PPI + +N++ +  
Sbjct: 812  HPGLGMVQPSVFIPLAEQSGLIHSIGEWVLRTACEQNKRWQD-IGLPPIRVAVNLSPEQF 870

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             + +L   ++ ++  T   P  ++L  +ESV +   E     L +L+++G+S+ +DDFG+
Sbjct: 871  KNPKLVAIVKNVLEDTRLPPQYLELEITESVAVKEAETVIRSLRQLKELGVSIAIDDFGS 930

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
            + S L  L  +P D +K    L+     T K  AI ++I+ +A+NI   ++A+ +  E  
Sbjct: 931  EYSSLGRLRSMPVDRIKMAMCLIQDLPTTPKDEAIAKAILYLARNIGVRVVAEGVETEQQ 990

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++ LTR  C  +Q  +   P+    + ++L++
Sbjct: 991  LEFLTRWSCREVQGFYFYRPMPAEKVEEILRQ 1022


>gi|261250311|ref|ZP_05942887.1| C-di-GMP phosphodiesterase A-related protein [Vibrio orientalis CIP
           102891]
 gi|260939427|gb|EEX95413.1| C-di-GMP phosphodiesterase A-related protein [Vibrio orientalis CIP
           102891]
          Length = 685

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 224/450 (49%), Gaps = 10/450 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++ +   +   A+ D+LTG+ NR   L  L   +  +  D+     +  +D+D++K IN
Sbjct: 232 DREAAEVQLNQLAYYDSLTGLANRSLMLQMLEDEIIHANKDNQA-GALFYLDLDRFKTIN 290

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD ++ +++ RI   L+     AR+ G+ F I+L    +  K  + A  +   
Sbjct: 291 DSLGHTIGDHLIKAISMRIEAWLQEEFTAARIGGDEFAILLPH-TSVDKAHELAQQLLAL 349

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ P ++ + ++  T S+G A + S   T+ ++L+ A+ A+Y AK  G N    +     
Sbjct: 350 ISNPYSIDDHQLYCTVSVGIAVFPSVGGTNIDVLRQADTALYRAKVAGRNKYMFYEPEMQ 409

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + I++ L  A+   +L L Y P +      I+G+EALI+W+HP+ G +    FM
Sbjct: 410 AQVESFLEIEKGLHEAINKGQLELYYQPQVDDKHH-IIGVEALIRWNHPEKGLLPPGVFM 468

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINIASKDLLDNELCEGMQA 816
            IAEE   I  I  +++E+      +W+    +P  F  + INI+      +   E +  
Sbjct: 469 PIAEETGQILQIGNWIIEQACYQYANWKRLNLLPDTFRRLAINISPLQFSQSAFVEHIVD 528

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++   S   I+L  +E++++ N E +   +  L++  +  ++DDFGT  S L YL ++
Sbjct: 529 SMAQAGISGEHIELEITENLLLENVEGTVQKMKELKQHNLKTSIDDFGTGYSSLRYLKHL 588

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +T     E   AI+ +II  AK +   +IA+ +    +++ L ++GCD 
Sbjct: 589 SVDVLKIDRSFVTQLHLDESDQAIVDTIIMTAKRLNLEVIAEGVEDAYELQALKQLGCDQ 648

Query: 935 IQDSHVASPLGFNSILKLLKERF-PLVKNT 963
            Q      PL    + +  ++ F P+ + T
Sbjct: 649 FQGYLFDKPLPVTELAQRFEKNFYPVDEPT 678


>gi|153826505|ref|ZP_01979172.1| GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|149739685|gb|EDM53892.1| GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|327483458|gb|AEA77865.1| C-di-GMP phosphodiesterase A-like protein [Vibrio cholerae
           LMA3894-4]
          Length = 685

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 223/453 (49%), Gaps = 10/453 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  ++ +  + + 
Sbjct: 214 DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQ-NSHS 272

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +++   
Sbjct: 273 TGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL 332

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            + +K  + A  +   I+ P  + + +   T SIG + + S   ++ ++L+ A+ A+Y A
Sbjct: 333 -SPVKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRA 391

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +           + I++ L  A+   +L L Y P +      I+G+EALI
Sbjct: 392 KASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALI 450

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINI 800
           +W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  + INI
Sbjct: 451 RWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINI 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          E +   + +   +   I+L  +ES+++ N E +   + +L++  IS+++
Sbjct: 511 SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +IA+ +
Sbjct: 571 DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++  L ++GC+  Q      PL    I +
Sbjct: 631 EDTSELAALKKLGCNQFQGYLFDKPLRAEEIAQ 663


>gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [Herminiimonas arsenicoxydans]
          Length = 540

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 128/539 (23%), Positives = 255/539 (47%), Gaps = 13/539 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           +   + +  +   A ++G +   + G   N    + ++DR      L   +   +     
Sbjct: 5   NRQGEILYASRRAAEVIG-SDAQLVG--MNLFELVRLSDRHAIEASLRQALLSMQIT--- 58

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           + RV         +   ++ ++   G  L  + +  DI+ ++K+ E +   A  D LT +
Sbjct: 59  QVRV-HMATHTAVLQFELQMIAYETGSALELLLVGRDISHRQKTEERLRHMATHDELTNL 117

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR    DRL+  +  +    N+  +V+ +D+D +KK+ND LG AVGD +L     R+ E
Sbjct: 118 PNRALLADRLSMGMAQARRT-NIGFSVIALDLDGFKKVNDALGHAVGDALLRIAAGRLRE 176

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L+  D LAR+ G+ F  +L    +  +I + A  M  ++ +P  + +  + V+ASIG A
Sbjct: 177 TLRDVDTLARVGGDEFVAVLPGAIDEAEIQNVARRMISALQLPFEINDDTLYVSASIGVA 236

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSE 719
            +     +  ++L +A+ AMY AK  G      +     +     V ++  +  AV N E
Sbjct: 237 IYPIHGDSEVKLLAHADAAMYRAKETGKARCIIYNELAFNRIEHDVSMEAAMFEAVRNGE 296

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L Y PI+     +I+G EAL++W  P  G +  ++F+ +AE+  +I  +  + L+   
Sbjct: 297 FLLHYQPIVDAQTRQIMGFEALMRWMRPDIGLVPPNQFIPMAEDNGLINLLGAWALKSAC 356

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             +  + + A    +++ +N++ +   +++    M   +  +     ++ L  +E ++M 
Sbjct: 357 VQLKRFEEAAGRQ-LYVSVNVSPRQFRNDQFLGMMDEALKLSGLEGHQLMLEITEGILMS 415

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           +PE + +LL ++ + G+ + +DDFGT  S L YL   P   +K + + +     + K  A
Sbjct: 416 DPEHAEVLLNKIAERGVRIAIDDFGTGYSSLIYLKRFPIAALKIDRTFIKDLPASVKDAA 475

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I   I+ +A ++    +A+ +  E  +  L+  GC  IQ  H   P   +S++ +L+  
Sbjct: 476 ICNVILNLAGSLNLQTVAEGVENEQQLAFLSTQGCSLIQGFHTGYPSLPDSLIDILEAE 534


>gi|127513751|ref|YP_001094948.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
 gi|126639046|gb|ABO24689.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
          Length = 677

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/430 (26%), Positives = 215/430 (50%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +    + + T++ ID+D++K +ND L
Sbjct: 239 QTQSKLRRMATRDPLTGLPNRTLLLETIAVSIQRARVHKH-QFTMLFIDLDRFKNVNDSL 297

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     +ARL G+ F I+        + ADF   +   + +
Sbjct: 298 GHALGDQFLARIARVLERVVGDRGTVARLGGDEFVILAEDARTPDQAADFVDKLLMQLNV 357

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E  I   AS+G + +    +++ +++++A++AMY AK  G N    F+       
Sbjct: 358 PLQLNEHTIHPAASVGISIYPDDGLSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 417

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P   +   +++  EALI+W       IS   F+ +A
Sbjct: 418 AVRLRTEASLHDALKNNEFLLHFQPKFNIKTGKVIACEALIRWK-KDGRLISPMSFIPVA 476

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  +++E   R +  WR + N   I I +N+AS+   D  L   ++ L  + 
Sbjct: 477 EETGIIIPLGRWVIEEACRTLKHWRKRYNY-AIPIAVNVASQQFADASLVPDIKQLALRY 535

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 536 QIDPSLLEVEITETSLMNDIELAIHKLEQLKGAGFGIAVDDFGTGYSSLSYLRHLPITTM 595

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T       AI  +I+ + K +   I+A+ I  E  +  L +M C+  Q  + +
Sbjct: 596 KIDRCFVTDL-PNESAIASTILMLGKQLNLHIVAEGIENEQQLNWLKQMDCEIGQGFYYS 654

Query: 942 SPLGFNSILK 951
            PL  +    
Sbjct: 655 QPLDISEFEN 664


>gi|299534106|ref|ZP_07047458.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
 gi|298718015|gb|EFI59020.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
          Length = 591

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 134/554 (24%), Positives = 254/554 (45%), Gaps = 14/554 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R+  A+  + D +   D   + VT    +  I G   G + G   +    +    +    
Sbjct: 45  REQQALDAAPDGILLVDRDGNIVTANAAMQAISGYGRGELEGQALD--TLLPPEFQAGHG 102

Query: 466 TILDSFVGYRRGR---LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             L S+      R   L     ++        + I +    + +  +   I    D+TE 
Sbjct: 103 HYLRSYFAQPSRRPMGLGGVLWLQRKQGNAVPVDIALGYFGDDDKGL--AIAFVRDVTEL 160

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +  + +   A +D LTG+ NR  F   L   L L+  D       + +D+D +K IND 
Sbjct: 161 HQMQQRLKFQATKDTLTGLNNRWQFGQELQEQLKLAQADGEALAL-LQLDLDNFKAINDG 219

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L  + RR+   L+   +LARL G+ F ++L+ EN + +   ++  +  +++
Sbjct: 220 YGHAAGDQLLREVARRLKSQLRSEGVLARLGGDEFMVLLVGEN-AARARFWSEQILAALS 278

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
           +P       +   AS+G A +     T  ++++ A++AMY AK +G  H   F  +    
Sbjct: 279 IPFKHDGLALDFGASVGIALYPDDAQTGDDLMRFADMAMYSAKGQGRGHAVFFEPAMGKE 338

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++RV + E L +A+    L L Y P +++    +V +EAL++W  P  GN+S + F+ +
Sbjct: 339 MAERVQLAERLRMALSYGGLQLHYQPQVKVESAAVVAVEALLRWHDPLLGNVSPARFIPV 398

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I A+  ++L+   + I  W       P+ + +N+++  L    L E + + + +
Sbjct: 399 AEASGQIVALGNYVLDAACKQIALWLKAG--TPLRVAVNLSAYQLRQVNLVEQVSSCLQR 456

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +ES  M NP +   +L  L ++G+++ LDDFGT  S L+YL Y+P   
Sbjct: 457 YQVPPQWLELEVTESQAMINPAQGSEVLQGLARLGVTIALDDFGTGHSSLAYLQYLPLQR 516

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           VK     +   +  R  ++  I+ MA  ++  ++A+ +     ++ L  +GC++ Q    
Sbjct: 517 VKLGREFLF-PSPCRDRLMGGIVHMAHALDLEVVAEGVEELDQLQLLRDIGCEFFQGWLH 575

Query: 941 ASPLGFNSILKLLK 954
           +  +    +   L 
Sbjct: 576 SRAMPAEQVRDWLA 589


>gi|160899438|ref|YP_001565020.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160365022|gb|ABX36635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 820

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 115/592 (19%), Positives = 243/592 (41%), Gaps = 15/592 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +Q   +   V ++++  +   + +         + ++ ER    +   GD V   D    
Sbjct: 209 LQGIHLVLGVALILVALWHTRRMLQQRQQVQNDLLTEKERAQTTLASLGDAVITTDAQGV 268

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIH---INDRDNFRTILDSFVGYRRGRLQYEF 483
                P    +LG +   + G   +    +H   I+      ++L   +  ++ R ++  
Sbjct: 269 VDYANPAALGLLGSSEQQLKGQ--HLAKGLHFNSIDTTQTAESLLAHLLSGQQLREEHTR 326

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            +R  D     + +    +S         + +  D++ +++ L+ +  +A  D LTG+ N
Sbjct: 327 WLRRHDRSIVPVKLMGSAISGGGERPAGAVIVLRDVSREQQYLDQLSWHASHDGLTGLEN 386

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F  RL  +L+           V+ +D+D++K IN+  G   GD++L  ++R +   L
Sbjct: 387 RVEFERRLQRLLNQGQHRLRPS-AVLYMDLDQFKLINETCGHPAGDEMLCEVSRLLLHNL 445

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D LARL G+ FG++L +      +       + + A+ ++  ++ +    SIG    
Sbjct: 446 RETDTLARLGGDEFGVLLENCPPEPALRIAEKLRQATEALHVHWGKQVLRTGLSIGLVHI 505

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSE 719
                ++ ++L+ A++A Y AK RG N +  +R            +     + +A+E   
Sbjct: 506 GGEVQSAQDLLRMADMACYRAKERGRNRIYVYRSDDGEYTRHVSEMEWVTRIRMALEQER 565

Query: 720 LYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L    I       +  +  E L++    +   IS + F+  AE   ++  ++ +++ R
Sbjct: 566 FCLYAQSIAPLQPDGQRGLHFEVLLRLRDEQGQIISPATFIPAAERYGIMPTVDRWVIAR 625

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               +               IN++   L D+ L + +Q  +S    +P  +    +E+  
Sbjct: 626 TLATLAQHPAALRHID-TCAINLSGPSLDDDGLLDFVQEQLSTHGIAPQLLCFEITETSA 684

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           + +   +  L+  LR +G    LDDFG   S L+YL  +P D +K +G  +         
Sbjct: 685 IASLSSATRLIQALRTLGCRFALDDFGVGMSSLTYLKQLPVDYLKIDGGFVRDMLQDPSN 744

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            A++  I  +   +    +A+ +      + L  +G DY Q   +A P+  +
Sbjct: 745 HAMVEMINRIGHILGKRTVAEYVETREIAQALQAVGVDYAQGFALARPVPLD 796


>gi|158425284|ref|YP_001526576.1| sensory box/GGDEF family protein [Azorhizobium caulinodans ORS 571]
 gi|158332173|dbj|BAF89658.1| sensory box/GGDEF family protein [Azorhizobium caulinodans ORS 571]
          Length = 833

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/421 (28%), Positives = 209/421 (49%), Gaps = 13/421 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+PNR  F +RLT +L  + +       V+ +D+D +K +ND LG  VGD +L ++
Sbjct: 416 DDLTGLPNRLLFTERLTALLATTRS----PLAVLFLDLDYFKTVNDTLGHVVGDQLLRAV 471

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ E  +  +++ARL G+ F II    +        A  +   I+ PI++ +  +   
Sbjct: 472 ATRVAEEAQPSELVARLGGDEFAIISSQADQPEAALALAERIIARISRPISVEDHRVIAG 531

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
            S+G A   +   +  E+LKNA+LA+Y AK  G      F      +   R  ++ DL  
Sbjct: 532 GSVGIAMAPADGTSVIELLKNADLALYRAKAEGRGQARLFEPEMEHTALSRRSLELDLRS 591

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A EN + +LV+ P  R+ D ++ G EAL++W HP  G ++ + F+  AEE  +I  +  +
Sbjct: 592 AWENGQFFLVFQPFFRVGDRKLCGFEALLRWRHPTRGIVAPATFIACAEETGLILPLGAW 651

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L    R    W D      + + +N++        + + ++  +  +   PSR++L  +
Sbjct: 652 VLTEACRAAADWPD-----DVRLAVNLSPLQFRSGHMPDQIREALRVSGLKPSRLELELT 706

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES ++         L  LR  GI++ LDDFGT  S LSYL  +P D +K +   ++   E
Sbjct: 707 ESTLLEEGSGIHGALQGLRSQGITIALDDFGTGYSSLSYLRSLPIDRIKIDRGFISRICE 766

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                AI+R+++ ++  ++    A+ I  E  ++ L   GC Y+Q   +  P+       
Sbjct: 767 DDPSRAIVRAVLQLSAALKLETTAEGIETEEQLETLRAEGCGYVQGYLLGRPMRATEARD 826

Query: 952 L 952
           +
Sbjct: 827 M 827


>gi|122879199|ref|YP_201200.6| hypothetical protein XOO2561 [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 838

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/617 (21%), Positives = 249/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 221 FELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 278

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 279 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 336

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  D+T ++++ E 
Sbjct: 337 LRISDGGLPE-QLELCFYRNSGQLIWVQVLIELDR-REGLPPRFVALFRDVTREREANER 394

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K +ND  G A G
Sbjct: 395 IELLAHYDRLTGLPNRFLLREQAENAIREAHERGQV-LAMLLIDLDGFKSVNDSFGYATG 453

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 454 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 513

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
              + + ASIG A           +L+ A+ AM+ AK  G N    +        +  ++
Sbjct: 514 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMHAAKETGRNTFHYYSQDVLLRAQRRLE 573

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               L  A+E  E  LVY P++    +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 574 LGHALQGALEREEFTLVYQPLVNTSGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 633

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + +N+++  L +    E +  +     + PS
Sbjct: 634 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVSVNVSAVQLRERGFAERVLEICRDNGWPPS 692

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 693 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 752

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 753 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 812

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 813 SPRDMAQWLREAETGMR 829



 Score =  123 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +       +      +H  D  +  
Sbjct: 18  RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPPPNNLTALSGLMHPEDHAHVS 77

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 78  AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 137

Query: 525 SLEGILCN 532
             + +   
Sbjct: 138 LEQQLREQ 145



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+    + G        
Sbjct: 138 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMIHLRLQGIRGILRLL 197

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
              +     R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 198 CRPS-VAQLRSAWRK-IKHEGMPVHFELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG 255

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 256 QLQNVTEQRQTDALIRWR------TELLNR 279


>gi|291617596|ref|YP_003520338.1| YciR [Pantoea ananatis LMG 20103]
 gi|291152626|gb|ADD77210.1| YciR [Pantoea ananatis LMG 20103]
 gi|327394025|dbj|BAK11447.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis
           AJ13355]
          Length = 669

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 127/620 (20%), Positives = 259/620 (41%), Gaps = 19/620 (3%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           +   + +    I L + I             +   V       +     V      + G+
Sbjct: 61  LLRAMPVITSSINLTLTIHGEQVAMHFVGRRINQSVWAGTASAWGDTSAV--ARDLTLGL 118

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
               +     V  +  ++   D   +            GL    + G     L       
Sbjct: 119 SFAEQ----VVSEANSVIVILDQRGNIQRFNRLSEEYTGLYEQDVIGRNVFQLFMTKQEA 174

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             + R I   F        + E  ++    Q  ++       S S  + +  I    DIT
Sbjct: 175 AASRRNIAGFFRDGN--SYEVERWIKTMKGQRLFLFRNKFVHSGSGKNEIFLICSGTDIT 232

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++ E +   A  D +TG+PNR +   +++  L+ +   +     V+ +D+D +KK+N
Sbjct: 233 EERRAQERLRVMANTDGITGLPNRHAIHQQISHALERA---EGSETGVVYLDLDNFKKVN 289

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L +++  I   L     L RL G+ F  +L    +   +   A  +   
Sbjct: 290 DAYGHMFGDQLLQAVSLAILSCLSKNQTLGRLGGDEFV-VLAEHTSQAALEAMATRILDR 348

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           +  P  +   E+    S+G A           +++NA+ AMYHAK         F   ++
Sbjct: 349 LRQPFRIGLIEVYSGCSVGIALAPLHGEDRECLIRNADTAMYHAKENNRGSYCVFAEEMN 408

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + + +  +L  A+E   L + Y P +   D ++   EAL++W+ P+ G +S  EF+
Sbjct: 409 RRVFEYLWLDTNLRKALEQDHLLVHYQPKVD-ADGKVRSAEALVRWNSPERGLVSPGEFI 467

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  +I  +  +++  + + II+WR+Q     + + +N++++ LLD  +   ++  +
Sbjct: 468 PYAEESGLIVPLGRWVMLNVLKQIIAWREQNIY--LRVAVNVSARQLLDQTIYSDLKQAL 525

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    +   + +  +ES ++ N   +  L+ + +++G  + LDDFGT  S LS L  +P 
Sbjct: 526 TDAGLTECPVDIELTESCLIENEAEALKLMRKFQELGAQIHLDDFGTGYSSLSQLARVPI 585

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +    ++    +++R+I+ +AK ++  +IA+ I    +   + + G D  Q
Sbjct: 586 NAIKLDQSFIRNVNKRPVSQSLVRAIVAVAKALDLQVIAEGIETVDEEAFVLKSGVDGRQ 645

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+  +     L + 
Sbjct: 646 GYFYAKPMPADQFGHWLAQH 665


>gi|24376026|ref|NP_720069.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24351032|gb|AAN57513.1|AE015887_9 sensory box protein [Shewanella oneidensis MR-1]
          Length = 705

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 237/558 (42%), Gaps = 13/558 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDR 461
            E  S  +  S + V+  DI    +     +  I G ++  +      +L    ++ +D 
Sbjct: 153 KEILSTTLEESAEAVYITDIDNKILAVNKAMCRICGYSAEQLINKTPFFLEASPLNASDE 212

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 L       RG  Q E   + +D          R ++ ++G +  ++ I +DI+ 
Sbjct: 213 SECLQALKQ-----RGFWQGETLKQRSDGSTFPAWQSSRRIA-ADG-LEYHVNIFSDIST 265

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K     +   A  D LTG+PNR      L   LD    D      +M +D++ +K IND
Sbjct: 266 KKLLETQLTTRAMYDTLTGLPNRFHLKQILNGALDKLKDDPLALGALMFLDLNGFKNIND 325

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G ++GD VL  +  R+         +AR+ G+ F ++L   +   +I  FA  +    
Sbjct: 326 SFGHSMGDRVLQLVAARLEAGCIEKADIARMGGDEFTLVLQDCSCKEEIQLFAEQILSLF 385

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSF 700
             P  +  ++  +  SIG A + +    + +++  A+ AMY AK    +       +S  
Sbjct: 386 DSPFEIEGQKFFLGTSIGIALFPTHSDQAGQLISLADTAMYCAKKNQPHLVFYDKSMSQA 445

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ +  +L  A    +  L Y  I+ L   + +  EAL++W      +  ++EF+ +
Sbjct: 446 AELKLKLINNLRHAHSLKQFKLAYQAIVDLHTNKPIAAEALLRWQKSPTEHYEAAEFVPL 505

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE  +I +I  + LE+  +    WR Q   P   I +N++   L   +    +   +  
Sbjct: 506 LEETGLIVSIGQWALEQACKQASVWRAQY-QPDFKISVNVSPLQLEHVDFVGQVVNALEM 564

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  + L  +ES ++  PE++R  L R++ +G+ + +DDFGT  S LS LG +P D+
Sbjct: 565 VALPAEALILEITESALLRQPEQARHTLERIKALGVGIAIDDFGTGLSSLSRLGTLPIDS 624

Query: 881 VKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           VK +    +  +      +  +I+ +A+ +    +A+ I  +     +T MG  + Q   
Sbjct: 625 VKIDAEFALRLTDASGQKLCHAIVQLAQALGIHFVAEGIETQQQKDIITHMGQGFAQGFL 684

Query: 940 VASPLGFNSILK-LLKER 956
              P       +  L E+
Sbjct: 685 FGYPSYVEQFTESYLAEK 702


>gi|254690704|ref|ZP_05153958.1| GGDEF domain protein [Brucella abortus bv. 6 str. 870]
 gi|256255885|ref|ZP_05461421.1| GGDEF domain protein [Brucella abortus bv. 9 str. C68]
 gi|260756277|ref|ZP_05868625.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 6 str.
           870]
 gi|260882100|ref|ZP_05893714.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|297249249|ref|ZP_06932950.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|260676385|gb|EEX63206.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 6 str.
           870]
 gi|260871628|gb|EEX78697.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 9 str.
           C68]
 gi|297173118|gb|EFH32482.1| GGDEF domain-containing protein [Brucella abortus bv. 5 str. B3196]
          Length = 765

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 152/690 (22%), Positives = 286/690 (41%), Gaps = 40/690 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRR------YIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L   + R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFSERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL +N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDD
Sbjct: 598 IDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  
Sbjct: 658 FGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGRGVTVEGVET 717

Query: 921 EIDIKELT-RMGCDYIQDSHVASPLGFNSI 949
           E  +  +    G D +Q      PL    I
Sbjct: 718 EEQLALIRVAAGADLVQGYLFGMPLPTEEI 747


>gi|254521437|ref|ZP_05133492.1| hypothetical protein SSKA14_561 [Stenotrophomonas sp. SKA14]
 gi|219719028|gb|EED37553.1| hypothetical protein SSKA14_561 [Stenotrophomonas sp. SKA14]
          Length = 686

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 213/435 (48%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   ++  A  D LT +PNR    DR+   ++ +    +    VM  D+D +K +ND  
Sbjct: 254 RANNKLIQAALHDPLTQLPNRMLLQDRIEQAIEKARRRGHT-VAVMFCDLDGFKAVNDAY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++ +RIG LL+  D  ARL G+ F I+L   +        A  +  +   
Sbjct: 313 GHQLGDRLLVAVAQRIGGLLRPQDTFARLGGDEFVIVLA-IDIPDDAVVVAERIIAAAGE 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P  L   E+ V+AS+G A +        E++ +A+ AMYH K  G N    F  S     
Sbjct: 372 PFTLDAAELQVSASLGIALYPDDAGNERELMAHADAAMYHTKETGRNGYTFFTPSMQLSA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + ++ + +DL  A+   EL L Y P          G EAL++W HP+ G ++   F+ IA
Sbjct: 432 NRQLRLLQDLRKAIARDELILHYQPKFPAAGAPATGAEALLRWQHPELGLLAPDVFIPIA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I  ++L+R    + +W D  +     + +N++        L + ++ ++ + 
Sbjct: 492 ERSGLILPIGDWVLDRACAQLRAWHDAGHSE-WSMAVNLSPLQFASPALLDSVREVLQRH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+R+ L  +E+  M + + S  +L  L  +G+ + +DDFGT  S L YL  +P   +
Sbjct: 551 RIEPARLTLEITETTAMKDVDASLAILNDLTAMGVHIAIDDFGTGYSSLLYLKRMPATEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +      ++  AI+ SII + + ++  ++A+ +  +   + L+ +GCD +Q  H
Sbjct: 611 KIDRAFVHDLECNDEDAAIVSSIIALGRTLQLQVVAEGVETQAQREYLSELGCDQLQGYH 670

Query: 940 VASPLGFNSILKLLK 954
           +  P+     L+ + 
Sbjct: 671 LGRPMEAEEFLRKVA 685


>gi|307945548|ref|ZP_07660884.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Roseibium
           sp. TrichSKD4]
 gi|307771421|gb|EFO30646.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Roseibium
           sp. TrichSKD4]
          Length = 758

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 230/455 (50%), Gaps = 12/455 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G  L  I      T++    E      A  D L+G+PNR++F +RLT  L       N+ 
Sbjct: 292 GLTLGIIDFTRHATKRMAKSEANAVHAASHDALSGLPNRENFRNRLTCALVE-KRARNIS 350

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ ID+D++K IND LG A GD+V+ +++ R+  ++    ++AR+SG+ F ++L   +
Sbjct: 351 TAVVYIDLDRFKDINDTLGHAAGDEVIRTVSTRVQPIIADKGMMARISGDEFALLLPEAH 410

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               I      ++  +A P+ +   E+ +  S+G A        + ++L+ A++A+Y AK
Sbjct: 411 GREWIEHVLKQVQDCLARPVKIGSTELHIGLSMGIAVAPQDGTIAGDLLRKADIALYEAK 470

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           + G      F   +      R  +  DL  A+EN EL + Y P    +D EIV +E+L++
Sbjct: 471 NEGRGRWAFFHAAMEEDVRTRDQMSRDLRKALENDELQIAYQPQCCAIDREIVAVESLVR 530

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       +  S F+ +AEE  +I  I L++L R  +D   W      P + + +N++  
Sbjct: 531 WLPINGKPVPPSVFIPVAEETGLINDIGLWVLNRACKDAAKW------PDLIVSVNVSPT 584

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                   E +   + K  + PSR+++  +ESV +G+ + +   L RL+++G+ + LDDF
Sbjct: 585 QFKHPRFAEKLVQTLEKNNFPPSRLEIEVTESVFLGSDKVNLETLQRLKELGVKIALDDF 644

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S LSYL   PFDT+K +    +   + + A  IL  +I +   +  +I+A+ I  E
Sbjct: 645 GSGYSSLSYLRRFPFDTLKIDRDFTSSINDGKEARDILAIMIQLGYALGMSIVAEGIEDE 704

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              + L  +GC  +Q  H+A PL  + + + L + 
Sbjct: 705 GQFQFLQGLGCHRMQGYHLAKPLAADDLSEFLDDY 739


>gi|153831648|ref|ZP_01984315.1| ScrC [Vibrio harveyi HY01]
 gi|148872158|gb|EDL70975.1| ScrC [Vibrio harveyi HY01]
          Length = 775

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/444 (28%), Positives = 213/444 (47%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           ++I  +K S   +   A  D LTG+PNR    +RL   L  +         VM ID+D +
Sbjct: 332 SEIERRKSSEMELAYQAKHDALTGLPNRVYGSERLDLELSRAERM-KSNVLVMFIDLDHF 390

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND +G  VGD+VL     R+   ++  D+LAR+ G+ F +++    ++     FA  
Sbjct: 391 KQINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDADSAKRFAAT 450

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P      E  ++AS+G + +      + ++L  A++AMY  K  G N    + 
Sbjct: 451 VLSVFNEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRNAFCFYD 510

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +     + ++  L  A+ +  L L Y PII L    IVG EAL++W+  K+G ++ 
Sbjct: 511 HNMNQDLQRFLELESRLRHAISHDLLELYYQPIIDLDSGVIVGAEALMRWNDEKFGFVNP 570

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813
            EF+ IAE+  +I  +  F +    +         ++ P+F+ +N +S      + L E 
Sbjct: 571 EEFISIAEKNGLIHQLGDFAIR---QACQQAAQWQDIAPLFVSVNFSSVQFRYCDRLFEQ 627

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  I ++  SP    +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL
Sbjct: 628 IKKHIEESGLSPELFDVEVTESLLFNHSSDLMEMLDNLRALGAKLTIDDFGTGYSALSYL 687

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +      E    ++  II MAK +   I+A+ I  +  +  L  + 
Sbjct: 688 QKFPFDRLKIDRSFLQNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKNLN 747

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C++ Q  H + PL       LL +
Sbjct: 748 CEFGQGFHYSRPLPAKDFEALLAK 771


>gi|73542351|ref|YP_296871.1| putative sensor protein [Ralstonia eutropha JMP134]
 gi|72119764|gb|AAZ62027.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 1129

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/573 (20%), Positives = 228/573 (39%), Gaps = 16/573 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
                 ++ +F + ER  + +   GD V   D         P    + G    S  G P+ 
Sbjct: 544  EQRRLTEALFEEKERLHITLQSIGDAVICTDAGMRVTFMNPIAEQLTGWTMASASGLPLE 603

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +         + +++ +         E   +++   + H +     P+  + G +
Sbjct: 604  RVFRIVDEVTGLPIPSPVEACLQTLTPAYLQEGAVLQSLTGERHDVQDSAAPVLTATGTV 663

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            L  + +  DIT  +     +  +A  D LTG+PNR  F  RL    D +A        + 
Sbjct: 664  LGAVLVFQDITTARAMQRELAHSAMHDALTGLPNRTWFEKRLREACD-AARTQGHHGALC 722

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             ID+D++K +ND  G   GD +L  L   I   ++  D+LARL G+ FG++L        
Sbjct: 723  FIDLDRFKIVNDTAGHGAGDILLRELGYLIRNHVRPDDLLARLGGDEFGLLLKDCTVDQA 782

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                   +    +       R   V ASIG A+         E++  A++A Y AK  G 
Sbjct: 783  ETIGHGVIDAIRSRRFPWDGRVYDVGASIGIAAIDQDVPPVGELMSRADVACYAAKAAGR 842

Query: 690  NHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYH-----PIIRLMDEEIVGLEA 740
            + V  +R            + I   +  A+E +   L                +   +E 
Sbjct: 843  SRVSVYRRDESDARRHHRELEIAAGIHTALEGNHFRLFAQEIRALQHHCGDPRDERHVEI 902

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L++        +    F+  AE   ++  ++ +++  + R+         +P + + IN+
Sbjct: 903  LVRMVDEHGEMVMPGAFIPAAERYDLMGHVDRWVIRNVLREYGE--RLCAVPGLSVSINL 960

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++  L +  L   + A +  +    +RI+L  +E+ ++ N   +  ++  +R+ G ++ L
Sbjct: 961  SANSLGEPFLLPFLHAELEHSALPANRIRLEITETALINNMAAANRVVTEMRRAGCTVAL 1020

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
            DDFG+  S  +YL   P D +K +GS +    +      I+ SI  +   +    +A+ +
Sbjct: 1021 DDFGSGLSSFAYLKQFPVDYLKIDGSFIRNLADNIVDREIVSSINDIGHRLGVKTVAEWV 1080

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              E  +  L  +G DY Q   +  P+  ++ L 
Sbjct: 1081 EDERTLNALRAIGVDYAQGYAIGRPVPLDAYLA 1113



 Score =  117 bits (294), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 120/410 (29%), Gaps = 41/410 (10%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNF-----YKDTVNSFTLYRGIII---GVASLLAIFL 206
           PG+V T  +         + L+ P           V       G+ +   G A LLA   
Sbjct: 44  PGSVATLWL--PNAFCLGLVLYRPRAEAPWLLASMVGGNLAANGLFVDGPGTAVLLAGAN 101

Query: 207 TI-FYMVNRSSMLIPTFAMA--WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
                   R    +   A A     LG  ++  G    L                     
Sbjct: 102 LFEVACSARLLRFVAAHAGAERLAPLGNFALTLGVAGVLGPALGATAGAAGLTWLGDTRF 161

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT-LASIVLYY 322
           + I +                     +  + +   ++      T S + +   A ++   
Sbjct: 162 ASIWWA-----------WWQAGALGMVVVLPLALTITSARVRATFSRSMLMPQAGLLALC 210

Query: 323 TYFIIYHGMKGYERA----VLLIPAWIL-----IFIWFIGLWMAITKRLDNDIIQPALVG 373
               ++   +G++      + L+ A +        +  +   + +        +Q ++  
Sbjct: 211 LAIGVFALWQGHDPFVAMSLPLVLAAMFANPFGTALLTLMATLTMELAAVAAHLQQSVPL 270

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              LI ++    +             + S  +R  LA+  S   +    +     T    
Sbjct: 271 SAALI-MVFPVCIAYLAEQNRAGRANLHSSDQRFRLAMEHSAIGMALTGLDGRWQTVNRS 329

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           ++ +LG ++  +      +    H +D D     +   +       + E R    D ++ 
Sbjct: 330 LSELLGYSAAELRQQ--RFQDITHPDDLDADLGQMQRLLAGEIESYRLEKRFLHQDGEYR 387

Query: 494 WMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           W ++ +  + +   G  L +I    DI  +K + +     + +   T + 
Sbjct: 388 WALLAVSLVRDQQSGHPLHFIAQIEDIHTRKLAQQQFEQLSRR---TQLA 434



 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q       R  LAV   G  +W+WD     +T    +  + G 
Sbjct: 405 LHFIAQIEDIHTRKLAQQQFEQLSRRTQLAVEAGGVGIWEWDFTSSGITWDARMHALHGT 464

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            + +    I  W+  +H  D       +   +   +     E+RV   D Q   +     
Sbjct: 465 DAANGAPVIAQWIAMLHPEDVGRVNGEMRRAIRGDK-PFDTEYRVVRPDGQVRHVRALAN 523

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
              + +G  L  +G   DITEQ++  E
Sbjct: 524 VTRSGDGTALALVGTNWDITEQRRLTE 550


>gi|78063420|ref|YP_373328.1| RNase II stability modulator [Burkholderia sp. 383]
 gi|77971305|gb|ABB12684.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 667

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/545 (21%), Positives = 237/545 (43%), Gaps = 9/545 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 120 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMTPEQGAQSRSNITGFFA- 177

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                  E  +   +    +        S S  +    I    DITE++ + + +   A 
Sbjct: 178 SNHSFAVERYINTVNGPRLFQFRNKFVQSGSGVEEQFLICSGIDITEERSAQQRLSELAN 237

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   +         +  ++ +D+D +K++ND  G   GD +L  
Sbjct: 238 TDVLTGLPNRHAISERIHAAIAAETAATRGQVGILFLDLDNFKRVNDHYGHITGDRLLQD 297

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 298 VSAIISGCLPSGATLARLGGDEFLVLFEHGTRP-LLEATAQIILERLRTPIHLGLMEVYT 356

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 357 SCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 416

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++ G+EAL++W  P  G ++  EF+  AEE  +I  +  
Sbjct: 417 KALEEEQFVLHYQPVVDIATGDVHGVEALVRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 476

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    I I +N++++ L D  +   M +++      P  + +  
Sbjct: 477 WVMRT--AAAQAAAWKAKGLGIRIAVNVSARQLQDMNIVHQMASILDAAGLKPGLLDIEL 534

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES  + + + +  L+ + R++G  + LDDFGT  S LS L  +P D +K + + +T   
Sbjct: 535 TESCFIEDEDAANGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAID 594

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  A++RS++ +AK +   ++A+ +    + + L ++  D+ Q  + A P+   +  
Sbjct: 595 RNPRSQALVRSVVSLAKALNFAVVAEGVETHAEAEFLKQLDVDHAQGYYYARPMPAQAFE 654

Query: 951 KLLKE 955
             L E
Sbjct: 655 AWLAE 659


>gi|158336134|ref|YP_001517308.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158306375|gb|ABW27992.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains),
           putative [Acaryochloris marina MBIC11017]
          Length = 581

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 130/446 (29%), Positives = 231/446 (51%), Gaps = 3/446 (0%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
              + I E+K++ E IL   F D LTG+PN+  FL +L    +      +    +++++I
Sbjct: 130 STLDFIEERKQTSESILKTTFYDALTGLPNQTYFLIQLAHAFERFKRKKSYHFAILIVNI 189

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D+++ IND  G   GD +L+++  R+   L   DI ARLSG+ F I+L   + +      
Sbjct: 190 DRFQSINDSFGRLAGDQLLIAIAWRLKNCLDEFDIFARLSGDEFIILLDEIDATSTAILA 249

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +      P  L  +E+ +TAS+G A        + ++L++A  A+ +AK  G  +  
Sbjct: 250 ANQISAEFQTPFRLSGQELFITASVGIALTLMEYDRAEDLLRDANTAVSYAKGLGRANYV 309

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  +        + ++ DL  A+   EL L + PI+ L D+ I+G EAL++W HP+ G 
Sbjct: 310 VFDPTMHARAVRLLQLENDLKRALREQELNLFFQPIVCLADQRIIGFEALVRWMHPRLGM 369

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  EF+ IAEE  +I  I+ +ML+     I  WR      P+ I +N ++K     +L 
Sbjct: 370 VSPLEFIPIAEETGLIFEIDQWMLKEACFRIQQWRR-FTEEPLSISVNFSAKQFDQPDLV 428

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++ ++ +T  SP ++ +  +ESV+    + +   L +L+ +G+SL +DDFGT  + L 
Sbjct: 429 SQVRQVLLETRISPQQLMIEITESVLFSRDQAAIDTLHQLKNMGVSLCIDDFGTGYASLQ 488

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           YL  +P DT+K + S +       + ++RSII +A ++  ++ A+ +   +  + L  MG
Sbjct: 489 YLQQLPVDTLKIDRSFIKRMDVDNLDLVRSIIELAHDLGLSVTAEGVETPVQRRFLLDMG 548

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C   Q    + P+     + LL+E+ 
Sbjct: 549 CQEAQGHLFSKPVDGQMAVALLQEKM 574


>gi|254508246|ref|ZP_05120370.1| ggdef domain protein [Vibrio parahaemolyticus 16]
 gi|219548863|gb|EED25864.1| ggdef domain protein [Vibrio parahaemolyticus 16]
          Length = 683

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 229/464 (49%), Gaps = 10/464 (2%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P    + ++       + + + +++ E  +   A+ D+LTG+ NR   L  L   +D S 
Sbjct: 209 PTLYRDDELGHLAKTFHSLWKDREAAEVKLNQLAYYDSLTGLANRSLLLQLLGKAIDDSN 268

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   +  +D+D++K IND LG  +GD +L +++ RI   LK     AR+ G+ F I
Sbjct: 269 VRSET-GALFYLDLDRFKTINDSLGHTIGDHLLKAISMRIEAWLKDDYTAARIGGDEFAI 327

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L +  N+ K  + A  +   I+ P ++ + ++  + S+G A + S   T+ ++L+ A+ 
Sbjct: 328 LLPN-TNAEKAHELAQQLLALISNPYSIDDHQLYCSMSVGIALFPSVGNTNIDVLRQADT 386

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+    L L Y P +   + +I+G
Sbjct: 387 ALYRAKVSGRNKYTFYEPEMQAQVESFLEIEKGLHEALNKGHLELYYQPQVN-SEHQIIG 445

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HP+ G +    FM IAEE   I  I  +++E+      +W+ +  +P  F  
Sbjct: 446 VEALIRWNHPEKGLLPPGVFMPIAEETGQILQIGNWIIEKACYQYATWQKEGVLPETFRR 505

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+      +   E +   +++   S  +I+L  +E++++ N E +   + +L++  
Sbjct: 506 LAINISPLQFSQDSFVEHIHDALTQANISGDQIELEITENLLLENVENAIQKMVKLKEYN 565

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           +  ++DDFGT  S L YL ++  D +K + S +T     E   AI+ +II  AK +   +
Sbjct: 566 LKTSIDDFGTGYSSLKYLKHLAVDVLKIDRSFVTQLHLDESDQAIVDTIIMTAKRLNLEV 625

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           IA+ +    ++  L  +GCD  Q      PL  + + +     +
Sbjct: 626 IAEGVEDCNELNTLKELGCDQFQGYLFDKPLPASELTERFARNY 669


>gi|87121267|ref|ZP_01077157.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           GAF sensor [Marinomonas sp. MED121]
 gi|86163424|gb|EAQ64699.1| diguanylate cyclase/phosphodiesterase (GGDEF &  EAL domains) with
           GAF sensor [Marinomonas sp. MED121]
          Length = 531

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 217/436 (49%), Gaps = 8/436 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   +      + D LT +PNR  F      +L       +L+  ++ +++D ++ +ND 
Sbjct: 87  KSIQDLTFKLKYYDLLTDLPNRHLFYMIFEKLLSK---RSHLQHGIISLNLDGFRTVNDH 143

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++++ +T+++   +   + L R++G+ F I+  +  +  ++      +   I 
Sbjct: 144 FGHRAGDNLILLVTQKLKSYVSKSEYLFRMAGDNFLILKENVQDISELETLGSNLIDLIC 203

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
               + + E+ +TAS+G + +         +LK A++A+Y +K RG N+ + F+      
Sbjct: 204 TIYPVEQMEMLLTASVGISHYPQHGADVDTLLKKADIALYDSKSRGYNNYKIFKPDMIKS 263

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  V +  DL  A+EN    L Y P +   D  ++G E LI+W H + G I+   F+ I
Sbjct: 264 TNAYVTLGADLRQAIENYNFELYYQPKVNASDFRVMGAEVLIRWKHSELGFITPDRFISI 323

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  +++    + ++ W D+ N   + + IN++ K L   +  + +  ++ +
Sbjct: 324 AEESGLIIPLGEWIIRETCKQLMEW-DKDNHHDLIVSINLSMKQLAHKDFIDMVMGILCE 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R++   +E+V+M +       + RL+ IGI++++DDFGT  S LSYL  +P  T
Sbjct: 383 THIDPKRLEFEITETVLMCDVNEVSEKVNRLKDIGINISIDDFGTGYSSLSYLKKLPIQT 442

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      +   AI+++ I MA ++   IIA+ +     +  L   GC Y Q  
Sbjct: 443 IKIDKSFIRDICSDDDDKAIVKATINMALSLNIDIIAEGVENIEQVNILRNFGCQYFQGY 502

Query: 939 HVASPLGFNSILKLLK 954
           + + P+   + +K  +
Sbjct: 503 YFSKPIDKQNFIKYCE 518


>gi|237731698|ref|ZP_04562179.1| RNase II stability modulator [Citrobacter sp. 30_2]
 gi|226907237|gb|EEH93155.1| RNase II stability modulator [Citrobacter sp. 30_2]
          Length = 663

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 255/569 (44%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +QG+    +     V  +  ++   D + +            GL    + G    +
Sbjct: 103 ARDLAQGLSFAEQ----VVSEANSVIVILDRMGNIQRFNRLCEEYTGLREREVIGQ-SVF 157

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++   +    R  ++ F        + E  V+    Q  ++       + S  + +  
Sbjct: 158 TLFMSRREAAASRRNIEVFFREGN-SYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + ++  ++ +    + +  ++ +D
Sbjct: 217 ICSGTDITEERRAQERLRMLANTDSITGLPNRNAIHELISDAIENA---GDTQVGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L S++  I   L    +LAR  G+ F I+L +E +   +  
Sbjct: 274 LDNFKKVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEF-IVLATETSQSTLEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    SIG +           +++NA+ AMY AK  G    
Sbjct: 333 TASRILTRLRQPFRIGLIEVYTGCSIGISLAPQHGQDCESVIRNADTAMYTAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R +  WR +     + + +N++++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQVAKWRAKGIN--LRVAVNVSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N + +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTDLKQVLHELDFEYCPIDVELTESSLIENEQLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPLDAIKLDQTFVRDVHKQPISQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  +   
Sbjct: 630 KNGVNERQGFLFAKPMPAAAFERWYRRHL 658


>gi|117929112|ref|YP_873663.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117649575|gb|ABK53677.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 884

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 208/444 (46%), Gaps = 10/444 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++  + +   AF D LTG+ NR  F +RL+ +L  +  +      V+ ID+D +K +N
Sbjct: 428 QLRELEQKLTQLAFHDPLTGLANRALFSERLSQVLAKAKAEGRT-CAVLFIDLDDFKTVN 486

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L ++  RI   L+  D  ARL G+ F +I+    ++      A  + + 
Sbjct: 487 DTLGHDAGDELLCAVAERITGCLRPSDQPARLGGDEFAVIIEDALSTQAAERIAARITEQ 546

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI++   E+ + ASIG A+      T+ E+L+NA+LAMY AK  G      FR S  
Sbjct: 547 LRAPISVHGCELHIRASIGIATS-QGVQTADELLRNADLAMYMAKADGKGRYRWFRPSMR 605

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  +K DL  A E  E  + Y PI+ L     V  EAL++W HP+ G +    F+
Sbjct: 606 TAVVSRHQLKSDLERAAERGEFQVHYQPIVDLRTGRPVAAEALVRWVHPERGLLFPETFI 665

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQ----ANMPPIFILINIASKDLLDNELCEGM 814
             AE   +I  I   +L      +  W+         PP  + +N++       +L   +
Sbjct: 666 SEAENSGIINEIGRLVLRHACAHVGGWQQHVERKPGEPPFAVAVNLSPAQFAQPDLVAQI 725

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +      P+ + L  +E++++   +R    L  L   G+ L +DDFGT  + L+ L 
Sbjct: 726 DEAVEAAGIDPNSLILEITETMMLQGSDRVLRTLDLLSGFGVRLAMDDFGTGYASLASLR 785

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K   +        E++   +R++I + + +    +A+ +      +EL R+GC
Sbjct: 786 KLPIDIIKIAKTFTDDITGNEEKSPFVRAMIELGEALGLVTLAEGVETAQQARELERLGC 845

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
              Q  H A P+    I  LL+  
Sbjct: 846 RLGQGYHFARPVPSAGIELLLQRY 869


>gi|15640678|ref|NP_230307.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587864|ref|ZP_01677621.1| GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|121728403|ref|ZP_01681431.1| GGDEF domain protein [Vibrio cholerae V52]
 gi|147673612|ref|YP_001216152.1| GGDEF domain-containing protein [Vibrio cholerae O395]
 gi|153818689|ref|ZP_01971356.1| GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|153822544|ref|ZP_01975211.1| GGDEF domain protein [Vibrio cholerae B33]
 gi|227080839|ref|YP_002809390.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229505720|ref|ZP_04395230.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae BX
           330286]
 gi|229509247|ref|ZP_04398732.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229519545|ref|ZP_04408988.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229608831|ref|YP_002879479.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254850892|ref|ZP_05240242.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255744125|ref|ZP_05418078.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262156101|ref|ZP_06029220.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|262169957|ref|ZP_06037647.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|298500774|ref|ZP_07010577.1| GGDEF domain-containing protein [Vibrio cholerae MAK 757]
 gi|9655095|gb|AAF93824.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547900|gb|EAX57984.1| GGDEF domain protein [Vibrio cholerae 2740-80]
 gi|121629337|gb|EAX61769.1| GGDEF domain protein [Vibrio cholerae V52]
 gi|126510769|gb|EAZ73363.1| GGDEF domain protein [Vibrio cholerae NCTC 8457]
 gi|126519962|gb|EAZ77185.1| GGDEF domain protein [Vibrio cholerae B33]
 gi|146315495|gb|ABQ20034.1| GGDEF domain protein [Vibrio cholerae O395]
 gi|227008727|gb|ACP04939.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|227012483|gb|ACP08693.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395]
 gi|229344234|gb|EEO09209.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC9]
 gi|229353819|gb|EEO18755.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae B33]
 gi|229357943|gb|EEO22860.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae BX
           330286]
 gi|229371486|gb|ACQ61909.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           MJ-1236]
 gi|254846597|gb|EET25011.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255738065|gb|EET93457.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholera CIRS
           101]
 gi|262021691|gb|EEY40402.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae RC27]
 gi|262030137|gb|EEY48782.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae INDRE
           91/1]
 gi|297540555|gb|EFH76613.1| GGDEF domain-containing protein [Vibrio cholerae MAK 757]
          Length = 685

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 221/453 (48%), Gaps = 10/453 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  ++ +  + + 
Sbjct: 214 DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQ-NSHS 272

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +++   
Sbjct: 273 TGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL 332

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  K  + A  +   I+ P  + + +   T SIG + + S    + ++L+ A+ A+Y A
Sbjct: 333 -SPAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRA 391

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +           + I++ L  A+   +L L Y P +      I+G+EALI
Sbjct: 392 KASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALI 450

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINI 800
           +W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  + INI
Sbjct: 451 RWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINI 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          E +   + +   +   I+L  +ES+++ N E +   + +L++  IS+++
Sbjct: 511 SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +IA+ +
Sbjct: 571 DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++  L ++GC+  Q      PL    I +
Sbjct: 631 EDTSELAALKKLGCNQFQGYLFDKPLRAEEIAQ 663


>gi|310816119|ref|YP_003964083.1| sensory box/GGDEF family protein [Ketogulonicigenium vulgare Y25]
 gi|308754854|gb|ADO42783.1| sensory box/GGDEF family protein [Ketogulonicigenium vulgare Y25]
          Length = 768

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 147/751 (19%), Positives = 289/751 (38%), Gaps = 34/751 (4%)

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
           R    I   A++  V  + +     L+    +     +     S         + L  + 
Sbjct: 35  RQRQWIAIAAISAGVAVWGTHFVAMLAYDGGMTVTFQIPLTLLSIAVAIVLFWVALQAHF 94

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
                   V   +    A   + F       +         L          +       
Sbjct: 95  WLKMPGKSVVTGSLIAFAIAGMHFTGMAAMQVAAQIHYNWGLVIGGQLTASVLAILAFAA 154

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV--------LIVILIGFT 385
           ++R        + I +  + +       +    + P      V        +  + +  +
Sbjct: 155 FDRIAGRSGVVMAIVLSLLAVGAMHFTAMSATQLVPDPARPAVEEGVGRTLIAAMTVSAS 214

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  ++A G  +  I             S D +         +        ++G A  ++
Sbjct: 215 IMLALIALG--TSFIDRYLNDLRGLADASLDGIAIL-RDGRIIDANDRFLLLVGAAREAV 271

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G  R+    + + D     T+  +              ++ AD +   + I    +   
Sbjct: 272 MG--RDVTSLLSVQDGSPLATLSKAATEGL---------LQQADGENRPVEIAAHVI-EY 319

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G   + I +  D+T  K+S   I   A  D+LT +PNR + +  +   ++++A +   +
Sbjct: 320 RGRDCQVISV-RDLTRIKESQRRITHLAKHDSLTSLPNRATAMQAMAQAMEIAALNGE-Q 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D++K +ND+ G   GD VL  ++  +   ++  D++ARL G+ F II     
Sbjct: 378 VAVLALDLDRFKAVNDIFGHQEGDRVLCQVSDYLRAAVRATDLVARLGGDEFLIIQTGAI 437

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   A  +    A      ++  TV  SIG A +       S +   A+LA+Y AK
Sbjct: 438 QPQGAVALAERIIAMFARDQTEAKKLRTVGTSIGIAVFPDDAADPSSLHHAADLALYRAK 497

Query: 686 HRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G  ++ S+   + + +  R  ++ DL  A+   E +L Y P++     +  G EAL++
Sbjct: 498 AIGRGNICSYDVDMDNEQQQRRELEHDLGHAIARGEFWLAYQPLVNARTRQTTGYEALLR 557

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           WDHP+ G +    F+ +AEE   I  I  ++L     +   W +Q     + I +N+++ 
Sbjct: 558 WDHPRLGAVPPDRFIPLAEETGAIIPIGEWVLTEACTEAAGWPNQ-----LSIAVNVSAV 612

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L + ++  +  +     R++L  +ESVVM + E     L  LR+IG+S+ +DDF
Sbjct: 613 QFWIPSLVDTVRNALQISGLPAHRLELEITESVVMRDSENVVRTLDELREIGVSIVMDDF 672

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LS L    FD +K + S +          AI+R+I+ +  ++   ++A+ +  E
Sbjct: 673 GTGFSSLSNLKSYAFDKIKIDRSFIATIDSDSSSRAIMRAIVGLGHSMNLPVVAEGVETE 732

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             ++ +   GC  +Q      P    +   L
Sbjct: 733 EQLQFVASEGCVQVQGYLFGRPAIAPAFTDL 763


>gi|261212231|ref|ZP_05926517.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC341]
 gi|260838839|gb|EEX65490.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. RC341]
          Length = 685

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 225/458 (49%), Gaps = 10/458 (2%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P    + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  +  + 
Sbjct: 209 PRLTHDDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAITTAQ 268

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            + +    +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +
Sbjct: 269 -NAHTTGALFYLDLDRFKTINDSLGHTIGDQLIKAVALRMDAWTKNDYLSARIGGDEFVV 327

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++    +  K  + A  +   I+ P  + + ++  T SIG + + S  I++ ++L+ A+ 
Sbjct: 328 LIPYL-SPNKAEEVAKQLLTLISNPYTVDDHQLYCTVSIGISIFPSVGISNIDVLRQADT 386

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK  G N    +           + I++ L  A+   +L L Y P +      I+G
Sbjct: 387 ALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQHQLELYYQPQVDEQHH-IIG 445

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
           +EALI+W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  
Sbjct: 446 VEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGTWIIEQACYQYAQWKKQGILPPHFRR 505

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI+      +   E +   + +   +   I+L  +ES+++ N E +   + +L++  
Sbjct: 506 LAINISPLQFAQDSFIEQVNHALRQAGITGEPIELEITESLLLENVESAIQKMAKLKESQ 565

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           IS+++DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +
Sbjct: 566 ISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEV 625

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IA+ +    ++  L ++GC+  Q      PL    I +
Sbjct: 626 IAEGVEDTSELAALKQLGCNQFQGYLFDKPLRAEEIAQ 663


>gi|37680874|ref|NP_935483.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
 gi|37199623|dbj|BAC95454.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           YJ016]
          Length = 679

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/596 (21%), Positives = 252/596 (42%), Gaps = 23/596 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
                + GG  +  +L                +   +   R +  +    D +   +   
Sbjct: 95  FSLSPVEGGEQISHLLFQAIDTSEKHILVKSLEESETKFSRLTQLL---PDGLLLVEEDT 151

Query: 426 DRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
             ++  P  A +LG  +   + G     L  + ++++                       
Sbjct: 152 -ILSANPAAARLLGFNSQHDLLG---EELSRLFMDEKSKMVFSHKLCSLLSEKAFVCMTS 207

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPN 543
            R    +   +      +  +   I+    +  D  E  K        +   D+LT + N
Sbjct: 208 ARCGFERRVQLHADFTTVLGNQSQII----LIQDADETPKHLSVKNSDDIHIDSLTKLYN 263

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F  RL  ++            +  +DID +K IND LG  +GD V++ +  R+  LL
Sbjct: 264 RFGFTKRLEQLIK-----SQTPLLLFYLDIDNFKNINDSLGHHIGDKVILEVAARLKRLL 318

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               ++  L G+ FG+IL    N+      +  +   I  P +L      +  SIG   +
Sbjct: 319 PQHSVIGHLGGDEFGVILPEPENNRMAELLSERIISLINQPFDLHHFSKRLACSIGSVRY 378

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELY 721
                 +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L 
Sbjct: 379 PEDGQDARVLLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLE 438

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y P +   D  I G EAL++W HP  G IS + F+ +AE+  +I+ +   ++  +   
Sbjct: 439 VWYQPKVNARDFSINGAEALVRWKHPVEGYISPAAFIPVAEKAGLIEHLGRVVMRDVFNT 498

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W     + P  + IN++ +   + +L + M+ L+  T   P+ I    +ES VM + 
Sbjct: 499 VKRW-KLQGILPGRVAINLSPEQFGNPQLIDFMEKLLRTTELDPNCITFELTESAVMSDS 557

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAIL 899
           + +  +L  ++K+G SL++DDFGT  S L+YL   P D +K + + +       K++ ++
Sbjct: 558 DHTIQMLNAIKKLGFSLSIDDFGTGYSSLAYLARFPIDELKIDRAFINDIDVLPKQVTVI 617

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +II + K++  T++A+ +        L+ + C  IQ  H   P   + I +L  +
Sbjct: 618 ENIINLGKSLNLTVVAEGVETHQQAALLSNLRCHSIQGFHFHRPQPKHEIEELFAQ 673


>gi|256830007|ref|YP_003158735.1| diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579183|gb|ACU90319.1| diguanylate cyclase/phosphodiesterase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 556

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 109/433 (25%), Positives = 206/433 (47%), Gaps = 7/433 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR    DRL   + L+    N +  +M +D+D +K IND LG  +GD 
Sbjct: 125 YMAEHDLLTGLPNRALLTDRLVQSILLAKRHGN-KVALMFLDLDHFKHINDSLGHGIGDQ 183

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L S+ +R+   ++  D ++R  G+ F ++L    +    A  A  +  S+  P  +  +
Sbjct: 184 LLQSVAKRLQASVRNSDTVSRHGGDEFVVLLPEVEDVQSAAHAAEKLIHSVGEPHFISGQ 243

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--- 707
           E+ VT S+G + +    + +  +++ A++AMY AK  G N  + F  S   S    +   
Sbjct: 244 ELRVTLSVGISMYPDDGVDAEALMRKADMAMYQAKKAGRNSYKIFTPSMNPSSSSAMRKS 303

Query: 708 -KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +  L  A+++ E  L Y P + L    I G E L++W+         ++F+ IAE   +
Sbjct: 304 AEMALKRALDHGEFILHYQPTVNLETGVITGAEVLLRWERSDHQLNFPAQFLTIAESCGL 363

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  +++    R   +W          I +N+++ +  D     G++A++ +T   P 
Sbjct: 364 ILPIGQWVIRESCRQAQAWLQTGFNLS-RIAVNVSAVEFRDKNFLTGVRAILRETGLDPH 422

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  SE+ +  + +++   L  L+ +G+ + +D+FGT  + LS+L   P  TVK + S
Sbjct: 423 FLQIEMSENGLSRDAQQALPALHALKNLGVQIAVDNFGTGYASLSFLREFPIGTVKIDKS 482

Query: 887 LMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +     K   A+  +++ MA+     I+A+ I  +       +  C   Q  ++  P+ 
Sbjct: 483 FVHNIEAKSGKAVASALLAMARGFNHQIVAEGIETQTQHAFFKKHHCAEGQGYYLGRPMA 542

Query: 946 FNSILKLLKERFP 958
             +   L  +R P
Sbjct: 543 TEAFAALASQRNP 555


>gi|194364922|ref|YP_002027532.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347726|gb|ACF50849.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
          Length = 686

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 212/435 (48%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + ++  A  D LT +PNR    DR+   ++ +         VM  D+D +K +ND  
Sbjct: 254 HANDKLIQAALHDPLTQLPNRMLLQDRIEQAIEKARRRGRA-VAVMFCDLDGFKAVNDAY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++ +RIG LL+  D  ARL G+ F I+L   +        A  +  +   
Sbjct: 313 GHQLGDRLLVAVAQRIGGLLRPQDTFARLGGDEFVIVLA-IDIPDDAVVVAERIIAAAGE 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P  L   E+ V+AS+G A +        E++ +A+ AMYH K  G N    F  S     
Sbjct: 372 PFTLDAAELQVSASLGIALYPDDASNERELMAHADAAMYHTKETGRNGYTFFTPSMQLSA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + ++ + +DL  A+   EL L Y P          G EAL++W HP+ G ++   F+ IA
Sbjct: 432 NRQLRLLQDLRKAIARDELLLHYQPKFPAAGAPATGAEALLRWQHPELGLLAPDVFIPIA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I  ++L+R    + +W +  +     + +N++        L + ++ ++ + 
Sbjct: 492 ERSGLILPIGDWVLDRACAQLRAWHEAGHTE-WSMAVNLSPLQFASPALLDSVREVLQRH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+R+ L  +E+  M + + S  +L  L  +G+ + +DDFGT  S L YL  +P   +
Sbjct: 551 RIEPARLTLEITETTAMKDVDASLAILNDLTAMGVHIAIDDFGTGYSSLLYLKRMPATEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +      ++  AI+ SII + + ++  ++A+ +  +   + L+ +GCD +Q  H
Sbjct: 611 KIDRAFVHDLERNDEDAAIVSSIIALGRTLQLQVVAEGVETQAQREYLSELGCDQLQGYH 670

Query: 940 VASPLGFNSILKLLK 954
           +  P+     L+ + 
Sbjct: 671 LGRPMDAEEFLRRVA 685


>gi|264680064|ref|YP_003279973.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262210579|gb|ACY34677.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 591

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 134/554 (24%), Positives = 254/554 (45%), Gaps = 14/554 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R+  A+  + D +   D   + VT    +  I G   G + G   +    +    +    
Sbjct: 45  REQQALDAAPDGILLVDRDGNIVTANAAMQAISGYGRGELEGQALD--TLLPPEFQAGHG 102

Query: 466 TILDSFVGYRRGR---LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             L S+      R   L     ++        + I +    + +  +   I    D+TE 
Sbjct: 103 HYLRSYFAQPSRRPMGLGGVLWLQRKQGNAVPVDIALGYFGDDDKGL--AIAFVRDVTEL 160

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +  + +   A +D LTG+ NR  F   L   L L+  D       + +D+D +K IND 
Sbjct: 161 HQMQQRLKFQATKDTLTGLNNRWQFGQELQEQLKLAQADGEALAL-LQLDLDNFKAINDG 219

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L  + RR+   L+   +LARL G+ F ++L+ EN + +   ++  +  +++
Sbjct: 220 YGHAAGDQLLREVARRLKSQLRSEGVLARLGGDEFMVLLVGEN-AARARFWSEQILAALS 278

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
           +P       +   AS+G A +     T  ++++ A++AMY AK +G  H   F  +    
Sbjct: 279 IPFRHDGLALDFGASVGIALYPDDAQTGDDLMRFADMAMYSAKGQGRGHAVFFEPAMGKE 338

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++RV + E L +A+    L L Y P +++    +V +EAL++W  P  GN+S + F+ +
Sbjct: 339 MAERVQLAERLRMALSYGGLQLHYQPQVKVESAAVVAVEALLRWHDPLLGNVSPARFIPV 398

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I A+  ++L+   + I  W       P+ + +N+++  L    L E + + + +
Sbjct: 399 AEASGQIVALGNYVLDAACKQIALWLKAG--TPLRVAVNLSAYQLRQVNLVEQVSSCLQR 456

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +ES  M NP +   +L  L ++G+++ LDDFGT  S L+YL Y+P   
Sbjct: 457 YQVPPQWLELEVTESQAMINPAQGSEVLQGLARLGVTIALDDFGTGHSSLAYLQYLPLQR 516

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           VK     +   +  R  ++  I+ MA  ++  ++A+ +     ++ L  +GC++ Q    
Sbjct: 517 VKLGREFLF-PSPCRDRLMGGIVHMAHALDLEVVAEGVEELDQLQLLRDIGCEFFQGWLH 575

Query: 941 ASPLGFNSILKLLK 954
           +  +    +   L 
Sbjct: 576 SRAMPAEQVRDWLA 589


>gi|188579423|ref|YP_001922868.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
 gi|179342921|gb|ACB78333.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium populi BJ001]
          Length = 795

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/553 (23%), Positives = 250/553 (45%), Gaps = 25/553 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + ER       + + +         V+     A ++GL  G++ G     L      D  
Sbjct: 248 EAERLHSLANAAVEGLVVCTGDT-VVSANRSFAKLVGLPQGALVGTA---LSAYLPGDAA 303

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                    +  +  R   E  +R AD     + + ++P+ ++ G     + +  D+  +
Sbjct: 304 RL------ALAGQPDR-PVEAELRQADGTLVPVEVIMQPVEHA-GRPHYAVAV-RDLRAR 354

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I   A  D  TG+ NR SF  RL   +  +A     +  V+ +D+D++K++ND+
Sbjct: 355 RQAESQIQFLAHHDAPTGLANRASFGKRLDQEM-RAADAGGRKLAVLCLDLDRFKEVNDL 413

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L S+ R +   L    ++ARL  + F  +L   +   +    A  + +++ 
Sbjct: 414 FGHAAGDAMLESVARIVSAELDDAQMVARLGSDEFA-VLAPCDGPSEAGRLAERILEALR 472

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
                      V  SIG A +       + +L  A+ A+Y AK         F       
Sbjct: 473 AG-KAGGNGPQVATSIGIALYPDDAQERAALLSYADTALYRAKSEERGTYRFFEAKMGVE 531

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R +++ DL  AV   E++LVY P   +    ++G EAL++W HP+ G +S + F+ I
Sbjct: 532 VRERRLLEHDLRHAVARGEMHLVYQPQTDVGTGAVIGFEALLRWKHPERGYVSPALFIPI 591

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  I  ++L    R+  SW       P+ I +N+++  +        +  ++ +
Sbjct: 592 AEESDAILQIGEWVLREACREAASW-----TQPLSIAVNVSAVQIHSPHFVGLVHEVLLR 646

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P R+++  +E+ ++ +P R+ L L +L+ +G+ + +DDFGT  S LS L   PFD 
Sbjct: 647 TGLAPHRLEVEVTETALISDPNRALLTLRQLKSLGLRVAMDDFGTGYSSLSNLRSFPFDK 706

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GS +    S E+  AI+RS++ + + +   ++A+ +  E ++  L    C   Q  
Sbjct: 707 IKVDGSFVRSVDSNEQTAAIVRSVLGLGRGLGLPVLAEGVETEAELGFLAAEQCHAAQGY 766

Query: 939 HVASPLGFNSILK 951
            +  P       +
Sbjct: 767 LMGRPSPIAQFAR 779


>gi|152988780|ref|YP_001349552.1| putative sensor protein [Pseudomonas aeruginosa PA7]
 gi|150963938|gb|ABR85963.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 1105

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/581 (21%), Positives = 243/581 (41%), Gaps = 13/581 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      ++ ++ + ER  + +   GD V   D         P    + G    
Sbjct: 520  IGINSDITEIRTLAETLYEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQ 579

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRP 501
               G         +  +  D   + +   +   R     +   + +   + H +     P
Sbjct: 580  DALGAPHELVFNVLDSDTGDTLDSPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAP 639

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G+I+  + +  ++T+ +     +  +A  D LTG+ NR  F + L   L  +   
Sbjct: 640  VRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELRRALANAQER 699

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +    +  ID+D++K +ND  G A GD +L  L+R + +  +  D LARL G+ FG++L
Sbjct: 700  ASQH-ALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLL 758

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + ++     +  + +  ++      R   V ASIG  + T++  ++SE++  A++A 
Sbjct: 759  FDCDLAVAEEVASKLIEQICSVRFPWEGRVYDVGASIGITALTATSRSTSELMSQADVAC 818

Query: 682  YHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-- 735
            Y AKH G N V  ++        +   +++   L  A+EN    L    I+ ++      
Sbjct: 819  YAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVVARRDGG 878

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               E L++   P         F+  AE   ++ +I+ +++      I      A +  + 
Sbjct: 879  RHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEAL--INFGPRIAAIDGLT 936

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I IN++   L D      +   I  +   P R+    +E+ +M     +  ++ +LR +G
Sbjct: 937  IGINLSGNSLNDPLFLPYLLDRIEHSPLGPERLYFELTETALMNQLSVASRIVDKLRDLG 996

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
              + LDDFG+  S  +YL     D +K +GS +          AI+ SI  +A+ +    
Sbjct: 997  CKVALDDFGSGLSSFNYLKNFAVDAIKIDGSFVRNLDKSPVDQAIVDSINQIAQRLGAVT 1056

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +A+ +     +  L R+G DY Q   V  P  F ++L+ L+
Sbjct: 1057 VAEFVESREILDHLARLGVDYAQGYAVGRPQPFATVLEQLR 1097



 Score =  106 bits (266), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 1/144 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T ++ + +            ER  LA       +W+WD+  +R+     +  + G+ SG
Sbjct: 392 VTQVEDIDSRKRAELERERLAERVKLATDAGQIGIWEWDLRHNRLHWDFRMFDLYGIRSG 451

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +  W   +H +D +     LD  +   + +   EFR+   D Q   +        
Sbjct: 452 PGETTVEQWQAALHPDDHERVLHELDRALSGLQ-KFDCEFRIVRPDRQVRHLRAIATLTR 510

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           + +   +R IGI +DITE +   E
Sbjct: 511 DEDSRPVRMIGINSDITEIRTLAE 534



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/362 (11%), Positives = 102/362 (28%), Gaps = 16/362 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISI 234
           LW    +     S   +  +++ +  +   F        R  +L     +  ++   +  
Sbjct: 68  LWMSAAFLPANLSEATFAAMLLRMNRVREDFDFNLLSAVR--VLWAGALVPPLLGASVGA 125

Query: 235 DFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIA 294
               L  L + P      +   +   L+   +      L   R          + +  +A
Sbjct: 126 ALVSLFGLGSFPQMWARWYVGDAMGMLALLPLCLASS-LATWRHGLSGRAGVDNAMLLLA 184

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
            LF           ++ R+  + I +     +       +  A++       I +     
Sbjct: 185 TLFI-------SFVALTRLPYSFIYVLLPLLVAAASTSVFGTALIGCLNTCFIAVLIAMG 237

Query: 355 WMAI-TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
             A  + +         L   L LI   +   +++    +      +     +   A+  
Sbjct: 238 VFAPESSQQRFGEPLLYLPMALTLIPAFLVSVIME---RSRREQHQVAIGEAQFRGAMEF 294

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S        +          +  +LG  +  +      +    +  D +    ++   + 
Sbjct: 295 SAIGTALVALDGRLFKVNEALCRMLGYPAERVG--ELTFQAITYAADLELDLDLVRDLLA 352

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R    Q E R    D +  W  I +  + +  G    ++    DI  +K++       A
Sbjct: 353 GRINSYQMEKRYLRQDGETFWARISVSLVRDEEGIAQYFVTQVEDIDSRKRAELERERLA 412

Query: 534 FQ 535
            +
Sbjct: 413 ER 414


>gi|297585431|ref|YP_003701211.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297143888|gb|ADI00646.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 698

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 133/500 (26%), Positives = 249/500 (49%), Gaps = 19/500 (3%)

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                  + +   + R + + + R         ++ I  +    GD+    G   DITEQ
Sbjct: 208 RIDQAFRTALATGQTRFELDIQNRH-------YLVNIGIIREEAGDVE-LAGSIVDITEQ 259

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +    I   A+ D LTG+PNR+SF   +      + +D +    V+++++D+++ IN+ 
Sbjct: 260 TRQARQIHKMAYFDELTGLPNRRSFEKEVDRR-KAAESDGDYEFAVLLVNLDRFQNINET 318

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL----ISENNSLKIADFAIAMR 638
           LG  VGD++L  +  R+ ELL+  D L R +G+ F I++     S+ +   +      + 
Sbjct: 319 LGHRVGDELLREIATRLEELLEEDDYLTRFTGDEFAIVMACQERSKRDREYLHYRCSVLV 378

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++    +   EI  TASIG   +      + E++++AE A+  AK +GGN    F  S
Sbjct: 379 EYLSKAYIVRGMEIHTTASIGVGLYPLHAQGTDELIQSAEAAISSAKEQGGNTFVLFDAS 438

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   I  + +L       + YLVY   +     ++ G E L++W HP +G +S +E
Sbjct: 439 IRNMLDRRILIEGELRKEASRDQFYLVYQAKVNAKTRKLCGFETLLRWHHPIFGELSPAE 498

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I ++  ++L+     +  W    ++  + + INI+ +    ++  + +  
Sbjct: 499 FIPVAEKSGLIISLGQWVLKHSIEQVRKWHQAGHV--LPVSINISVQQFTQSDFADFVSE 556

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I+ +   P+ I+L  +ESV   NP+ +R  + +L++IG+ +++DDFGT  S L +LG  
Sbjct: 557 QINASGVDPAMIELEVTESVT-ENPQLTRTTMKKLKEIGVMISMDDFGTGYSSLGFLGGY 615

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           PFD +K + S +   +E+  +++R+II +AKN+  T+ A+ +  E     LTR  CD +Q
Sbjct: 616 PFDRIKIDKSFIIHLSEENCSVVRTIIQLAKNLNMTVTAEGVETESHADFLTREQCDELQ 675

Query: 937 DSHVASPLGFNSILK-LLKE 955
               + PL      +  LK 
Sbjct: 676 GFFFSKPLPARKTERIWLKR 695



 Score = 79.6 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 7/149 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H       ++ +         A+  S  IV   D     +        I G     + G 
Sbjct: 6   HQSDRAENTEELKKKLNDIQTALDAS-TIVAITDARGVILEVNQKFCEISGYDDHELVGR 64

Query: 449 IRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               L    H   +  F+ + D+ +         E R +A D + +W    I P+ +++ 
Sbjct: 65  THRILNSGYHP--KAFFKEMWDTILQGEI--WSGEIRNKAKDGRIYWTSSTIIPIRDTHH 120

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQD 536
            I R+I I +DI+++  +    L  A +D
Sbjct: 121 RIERFIAIRHDISDRVSAELK-LKQALED 148


>gi|156976227|ref|YP_001447133.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527821|gb|ABU72906.1| hypothetical protein VIBHAR_04999 [Vibrio harveyi ATCC BAA-1116]
          Length = 775

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/444 (28%), Positives = 212/444 (47%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           ++I  +K S   +   A  D LTG+PNR    +RL   L  +         VM ID+D +
Sbjct: 332 SEIERRKSSEMELAYQAKHDALTGLPNRVYGSERLDLELSRAERM-KSNVLVMFIDLDHF 390

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND +G  VGD+VL     R+   ++  D+LAR+ G+ F +++    +      FA  
Sbjct: 391 KQINDSMGHFVGDEVLKLAAERLHNAVRKTDLLARIGGDEFLLVIPDLQDVDSAKRFAAT 450

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P      E  ++AS+G + +      + ++L  A++AMY  K  G N    + 
Sbjct: 451 VLSVFNEPFVWQNHEFFLSASVGMSVFPEDGDNAEQLLACADMAMYRVKQDGRNAFCFYD 510

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +     + ++  L  A+ +  L L Y PII L    IVG EAL++W+  K+G ++ 
Sbjct: 511 HNMNQDLQRFLELESRLRHAISHDLLELYYQPIIDLDSGVIVGAEALMRWNDEKFGFVNP 570

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813
            EF+ IAE+  +I  +  F +    +         ++ P+F+ +N +S      + L E 
Sbjct: 571 EEFISIAEKNGLIHQLGDFAIR---QACQQAAQWQDVAPLFVSVNFSSVQFRYCDRLFEQ 627

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  I ++  SP    +  +ES++  +      +L  LR +G  LT+DDFGT  S LSYL
Sbjct: 628 IKQHIEESGLSPELFDVEVTESLLFNHSSDLMEMLDNLRALGAKLTIDDFGTGYSALSYL 687

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +      E    ++  II MAK +   I+A+ I  +  +  L  + 
Sbjct: 688 QKFPFDRLKIDRSFLQNMFENESDRELVNVIIAMAKALNLKIVAEGIEEQRHVDYLKNLN 747

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C++ Q  H + PL       LL +
Sbjct: 748 CEFGQGFHYSRPLPAKDFEALLAK 771


>gi|154705984|ref|YP_001425443.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|154355270|gb|ABS76732.1| sensory box/GGDEF family protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 577

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 136/578 (23%), Positives = 267/578 (46%), Gaps = 29/578 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +F+   +  +A+    + +   D            + ++      + G           
Sbjct: 11  QVFNTLGKLDVALSALNEAIVWIDHEGHIAWCNLPFSQLISRPRIEIIGLFI-------- 62

Query: 459 NDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            D+       +  +      + +   + E    A D++  ++    + + +  G  L +I
Sbjct: 63  -DKTITLKKGNQIISLFKVCHEKLHFKEEIIEFAKDSKTLYLSAFSQQIVDKKGG-LHFI 120

Query: 514 GIANDITEQK-------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               D+T Q+       K+   I   A +D LT +PNR+ F+ RL   +       + + 
Sbjct: 121 IALQDVTLQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPK-SVDSKL 179

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISE 624
           +++ +D+D +K IND LG  +GD VLV ++ R+ +L        L  L G+ F I+L   
Sbjct: 180 SLLFLDLDNFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDL 239

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  +  + +    +    + V  SIG      SK  S  +LK A++AMY A
Sbjct: 240 QQDKDATLCAKKISNAFSESFKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADMAMYQA 299

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N    +          R++++     A+E ++ YLVY P   L  ++I G+E L+
Sbjct: 300 KKKGRNTFSFYTEKLGERYRHRLILENAFHQALEENQFYLVYQPQYELSTQKIRGMETLL 359

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS  +F+ IAE+  +I  I  ++L    +    W+ +  +  I + IN++ 
Sbjct: 360 RWKHPELGEISPEDFIPIAEKAGIIIPIGEWVLRHACQQYKQWQSKIPVGEIKLSINVSP 419

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L+  +    +  ++ +T   P+ I+L  +E+ +M     ++ +L  LR+IG+++ +DD
Sbjct: 420 PQLIRKKFANSVAHILKETNTPPNVIELEITENSLMTKLNSAKKVLEELREIGLNIAIDD 479

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DTVK + + + G    +   AI++ +I +A+++  T I + +  
Sbjct: 480 FGTGHSSLAYLKILPIDTVKIDKAFVKGLPDDQHDTAIVKFVIDLARSLNLTTIVEGVEK 539

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  ++ L ++G   +Q ++ +  +  + + KLLK + P
Sbjct: 540 KEQMEFLLKLGGPLVQGNYFSKAIEADLMFKLLKNQSP 577


>gi|313682598|ref|YP_004060336.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155458|gb|ADR34136.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 682

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/421 (28%), Positives = 219/421 (52%), Gaps = 7/421 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
            +A  D LTGIPNR  F+++L  ++     +      V  ID+D++K+IND  G ++GD 
Sbjct: 255 HSAHYDLLTGIPNRLRFVEKLNRLIYDYRQN-KTPFAVWFIDLDRFKEINDSFGHSIGDR 313

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL  +  R+ + +     +AR  G+ F II+ +  +   +          +  P++    
Sbjct: 314 VLQEVAIRLEKTIDKE-SIARFGGDEFAIIVENAQSMEYVESVIHRFVHLLTEPLDADGY 372

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           EI ++ S G + +      + E+L+NA+ AMY AK RG N    +         +R+ ++
Sbjct: 373 EIFISCSAGASFYPIDAANAEELLRNADSAMYQAKERGKNTYRFYTHELTQRVYERLTME 432

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A++N+EL L Y P + + + +I+G+EAL++W++P  G +   +F+ IAEE  +I 
Sbjct: 433 NSLRKALKNNELILHYQPQVDMSENKIIGVEALVRWNNPDMGMVPPVKFIPIAEETGLII 492

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           +I  ++++   R I+ W+ +      +I +NI++K L+   L + +  ++ K    P  I
Sbjct: 493 SIGEWIIDEACRQIVHWKSEGVEIG-YIAVNISAKQLMHGNLEKTIPLILDKYGCKPEWI 551

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES++M +PE S+ +L  L + G  L +DDFGT  S L+YL  +P   +K + S +
Sbjct: 552 ELELTESILMEDPEYSKNILTLLSEKGFKLAIDDFGTGYSSLAYLKNLPIHKLKIDKSFV 611

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I++S I + K +  TI+A+ I  +   + L R GC   Q  +   P+  
Sbjct: 612 DNLPFAAADCEIVKSTIHLCKGLNLTIVAEGIEQKEQGEFLLREGCMIAQGYYYFKPMAA 671

Query: 947 N 947
           +
Sbjct: 672 D 672


>gi|15598507|ref|NP_252001.1| hypothetical protein PA3311 [Pseudomonas aeruginosa PAO1]
 gi|48474660|sp|Q9HYT3|Y3311_PSEAE RecName: Full=Uncharacterized signaling protein PA3311
 gi|9949440|gb|AAG06699.1|AE004753_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 783

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 284/696 (40%), Gaps = 57/696 (8%)

Query: 279 HAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
           H ++     +      I    F     +    A    + +  + L       Y  M    
Sbjct: 113 HPRLWQWIGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLTMYMTA 172

Query: 336 RAVLLIPAWILIF--IWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           R    +   +L    I      M  T       +        L  + +LI        LA
Sbjct: 173 RPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALA 232

Query: 393 TGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              + +G  S   R      SL + G+                        G+A+  +  
Sbjct: 233 AVPYLRGRRSARYRYMKLIASLLLAGAI-----------------AAMHFTGMAALVLSV 275

Query: 448 PIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           P    L      D         +L S +                     W     +    
Sbjct: 276 PAGTPLELQASADSLRLGWLTGVLASAIAACG----------------IWAAWSEKQRER 319

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +  R   + N +     +   +   A  D+LTG+ NR +F +     L+        
Sbjct: 320 RLSENSRVNALLNQLD---HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG 376

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +D+D +K+IND LG   GD +L  ++ RI  +L+  D++AR +G+ F  +L   
Sbjct: 377 -LAVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEF-CVLADL 434

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    +  + + +  PI L  R + +TAS+G + + +      E+LKNA LA++ +
Sbjct: 435 TQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQS 494

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N+ + F        +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL+
Sbjct: 495 KACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALV 554

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +    F+ +AE   MI  ++ ++L R  RD+ S    A    + + +N  +
Sbjct: 555 RWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCA 613

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +L    L + ++  + +   +   ++L  +E  +M N +++  LL RLR++G+SL++DD
Sbjct: 614 SNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDD 673

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +     +++ + I ++II MA+ +   ++A+ +  
Sbjct: 674 FGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVET 733

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L    C+ +Q    + PL   ++ + L+  
Sbjct: 734 PQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAY 769


>gi|94496288|ref|ZP_01302866.1| sensory box/GGDEF family protein [Sphingomonas sp. SKA58]
 gi|94424467|gb|EAT09490.1| sensory box/GGDEF family protein [Sphingomonas sp. SKA58]
          Length = 761

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 143/757 (18%), Positives = 286/757 (37%), Gaps = 30/757 (3%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
            S        A       +++  FL         +   +       ++  +     +YL 
Sbjct: 27  ESRHHAYVLFALS----AALNSLFLLSDWRFAGTD--HFWVAVPARVAIVIWSIACLYL- 79

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
             R       +     A   ++     +     + IA   +  + L +   +        
Sbjct: 80  -CRHMTSFRALERICWAWQGVVAIAVGFLVSSRSDIAIFVMVLLPLVFYLVVPTSFRGNV 138

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP---ALVGGLVLIVILIGFTVIQHVL 391
              ++   A +  ++    L   +   +   +I      +       +    +   Q   
Sbjct: 139 GGGLVCEIALLTGYLAPDPLSSTMPGMIMAMLILHCGMWIAIARNNRLQRKEWDAGQTAR 198

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +            E   +AV      +         +      +   G A+G        
Sbjct: 199 SAQAALAASRDTLEHLFMAV---PLPLLVTRRDGTLLRMNRAASD--GYAAGLEIDLDNV 253

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              Y+   DR   R +L   +       Q+E R+R AD Q    ++  R +   +GD   
Sbjct: 254 EHSYV---DR-RSRGLLVQRLERGEAVDQFECRLRRADGQTRDAMLSSRAIM-VDGDAAY 308

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +  DIT++K++   +   A  D LTG+ NR  F+  +T     +++ D     ++++
Sbjct: 309 MTCVV-DITDRKETELRLQRLAMSDPLTGLANRAHFVAAVTQA--TASSGDRGLVAILLL 365

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K+IND  G   GD +L ++  R+   L+  D++AR+ G+ F ++L    ++  + 
Sbjct: 366 DLDEFKRINDTAGHDAGDALLQTVAERLRGALRPGDLIARMGGDEFAVLLTRLPDAEALQ 425

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              + +   +  P +   R +   ASIG A +         + K+A++A+YHAK+ G   
Sbjct: 426 PILMRITDQLHAPFSHAGRPLECRASIGVALYPDHGADDVALFKHADIALYHAKNNGRGR 485

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F+     S      + +     + + +    Y P I L D  I+G EAL +      
Sbjct: 486 AILFQPHLLDSWERETAMLDRARHILSHEQPCPWYQPKISLQDGGIIGFEALFRCPVADG 545

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             I   +     E   +  A+   M+ER+  D   WR +       + +N++  DL D  
Sbjct: 546 SIIMPGDIARAFEHPELGPALTERMVERVIDDCARWRSKGLAVG-HVALNVSGVDLQDEA 604

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             + +   +       + I+L  +ESV +  + +R   +L RL   GIS+ LDDFGT  +
Sbjct: 605 FADRLLGRMRTARIPTAMIELEVTESVFLGRDADRVCHILQRLSDAGISIALDDFGTGYA 664

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS+L   P D +K +   +          AI+R+++ +A ++    +A+ +     +  
Sbjct: 665 SLSHLKQFPIDIIKIDQRFVRDMETDPDDAAIVRAVLNLAHSLGIRTVAEGVENAQQLAY 724

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           L   GC Y Q     + +  + + ++L     + +  
Sbjct: 725 LRAGGCHYGQGYLFGAAMPADGVEQVLMSPEGISRQA 761


>gi|304312355|ref|YP_003811953.1| hypothetical protein HDN1F_27270 [gamma proteobacterium HdN1]
 gi|301798088|emb|CBL46310.1| Hypothetical protein HDN1F_27270 [gamma proteobacterium HdN1]
          Length = 834

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 138/704 (19%), Positives = 287/704 (40%), Gaps = 41/704 (5%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
           H ++     +       +  ++           R  +  +             +   +A+
Sbjct: 133 HQRLYLAREADQHSALGVMPITMSLRSGELRAQRTGVLLVQYDLRPLAAEAWQRVRHQAL 192

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL-----------IGFTVI 387
           + + +     +  +        R    ++      G      L           +   + 
Sbjct: 193 IFLLSIAGAALTLLMFAQWFIMRPVKALLSGMTEIGAGNFDSLPVFRGRGEFSALSRAMS 252

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +   A     + +    +R       + + +   D     +        +   ++  + G
Sbjct: 253 KMAAALKKNVRELRHSEDRFRQLSDAAFEAIVLHD-GGRILDVNGAFEVLFKRSAAQLIG 311

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +   YI   +++          G +R    +  R++ A+ +     I+ R     +G
Sbjct: 312 T--SIYAYIPEEEQEA-----SKLRGLQRVEGTWMVRMQDAEGEIFPCEIKARSRV-IDG 363

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             LR I +  D+  + ++ + I   ++ D +TG+PNR+S  +R+   L      +  R  
Sbjct: 364 RNLRII-VIRDVRARLEAEQEIRRLSYSDPVTGLPNRRSLQERVEDELASHEGAEARRSA 422

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-N 626
           ++ I++D +  IND LG+  GD VL  +  R+   L   D+LAR+  + FG++L     +
Sbjct: 423 LVAINLDGFASINDSLGMKAGDVVLREVAHRLLNKLSASDLLARVEADTFGVLLCGLTGD 482

Query: 627 SLKIADFAIA----MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             + +  A      +  +I  P++     + VTA  G     +    + E+L+ AE AM+
Sbjct: 483 VNEASLQASRATEILLAAIVEPLDCHGHVLHVTAGAGIVMIPNDSREAQELLREAETAMH 542

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLE 739
            AK  G + V  F  +      +R+ ++ DL +A  E  +  L Y P +      ++G+E
Sbjct: 543 LAKETGSSQVCFFAHNLQEMASERLRLRSDLKIALREGGQFQLHYQPQVN-SSGALLGVE 601

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN---MPPIFI 796
           AL++W HP  G +S  +F+  AE   +I  +  ++L   A  +   R++        + +
Sbjct: 602 ALLRWQHPVRGMVSPLQFIPEAEASGLIVELGQWVLGEAAACLRRLRNELPSAVGERLCM 661

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++ +   + +    ++ ++++       I+L  +ESVV  N + +   + +L K GI
Sbjct: 662 AINVSPRQFREADFVAKVEEVLAEFGKQLFSIELELTESVVADNLDATLKKMEQLHKHGI 721

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--------IAILRSIIPMAKN 908
              LDDFGT  S LSYL Y+P DT+K + S +      +          ++ +I+ MA  
Sbjct: 722 QFALDDFGTGYSSLSYLKYLPIDTLKIDRSFVMDIDADQSVRSVKRPAVLIEAIVKMAHQ 781

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  T++A+ +  +  ++ L   GCD  Q  + + PL   +++  
Sbjct: 782 LGMTVLAEGVETQAQLEWLVYSGCDKFQGYYFSRPLTEAALIAF 825


>gi|156975654|ref|YP_001446561.1| hypothetical protein VIBHAR_03387 [Vibrio harveyi ATCC BAA-1116]
 gi|156527248|gb|ABU72334.1| hypothetical protein VIBHAR_03387 [Vibrio harveyi ATCC BAA-1116]
          Length = 679

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 134/535 (25%), Positives = 243/535 (45%), Gaps = 19/535 (3%)

Query: 427 RVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            ++  P  A +LGL +   + G     L +I  N +  F   + + +  +          
Sbjct: 152 IISANPASARLLGLNSPHELLGEELTRL-FIDENSKKVFTHRISTLLSEK--PFVCLTSA 208

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNR 544
           R    +   +      +  S   I+    +  D  +  K        +A  D+LT + NR
Sbjct: 209 RCGFERKVQLHADTTAILGSESQII----LIQDADDAPKLLSSNSNEDAHIDSLTKLYNR 264

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F  RL  ++            V  +DID +K IND LG  +GD V+  ++ R+   L 
Sbjct: 265 FGFTKRLEQLIK-----SQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRSLP 319

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              I+  L G+ FGIIL    N+      +  +   I  P +L      +  SIG   + 
Sbjct: 320 NQAIIGHLGGDEFGIILPEPENTRMAEILSERIISLINQPFDLHHFSKRLACSIGSVRYP 379

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYL 722
                +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L +
Sbjct: 380 EDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEV 439

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +   D  I G EAL++W HP  G IS   F+ +AE   +I+ +   ++  +   +
Sbjct: 440 WYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAERAGLIEHLGRVVMRDVFNTV 499

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W     + P  + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E
Sbjct: 500 KRW-KLQGILPGRVAINLSPEQFGNPQLIDYMEKLLRTTELDPSCITFELTESAVMSDSE 558

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900
            +  +L  ++K+G +L++DDFGT  S LSYL   P D +K + + +       K++ ++ 
Sbjct: 559 HTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTLPKQVTVIE 618

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +II + K+++ T++A+ +        L+ + C+ IQ  H   P   + + +L  +
Sbjct: 619 NIINLGKSLDLTVVAEGVETHQQATLLSNLQCNSIQGFHFYRPQPKHEVEELFAQ 673


>gi|290242970|ref|YP_003494640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288945475|gb|ADC73173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 792

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/591 (22%), Positives = 244/591 (41%), Gaps = 16/591 (2%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           I+   L+GGL LIV L+   ++    A       +F + ER  + +   GD V   D+  
Sbjct: 189 IVALPLLGGLSLIVGLLAGWLVYRRTARS--ESELFHEKERAQVTLHAIGDAVITTDLRG 246

Query: 426 DRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEF 483
                 P    + G      ++  + +    I  +        L   V       L+++ 
Sbjct: 247 HVEYLNPVAEHLTGWTHDEAVNHRLDDVFMLIDASSGTRIYHPLTECVYDGMASGLRHDQ 306

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            + +   Q + +     P+ N +G I+    +  D+T  +     ++  A  D LTG+PN
Sbjct: 307 MLVSRTGQQYEIEEVASPIRNRSGAIIGAALVFRDVTRSRSLERDLIWAARHDELTGLPN 366

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F  RL  ++  +  +  +  +++ +D+D++K +ND  G   GD++L  L  +  E L
Sbjct: 367 RAEFERRLRKMVIHARRN-GIDHSLIYLDLDQFKVVNDTCGHPAGDELLRQLATQFQERL 425

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFAS 662
           +  D+LARL G+ FGI+L       +    A  +R S+A        +  TV  SIG A 
Sbjct: 426 RSSDVLARLGGDEFGILLERCT-LGEAEAIAEKIRASVAEGRFEWQGKVFTVGVSIGVAP 484

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENS 718
                  + + +  A+ A Y AK  G N +              D +   + +  A+E  
Sbjct: 485 IDPDTGDAEQFMSKADAACYLAKEAGRNRIHVTHSGDENVAYCEDHMHCVQAISEAIEAD 544

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            L+L    I  +  +     E L++    K   +S   F+  AE   ++  I+ +++ R+
Sbjct: 545 RLWLHGQNICPVSGKGKGYTEVLVRVLDQKGELLSPGTFIPAAERFGIMPQIDRWVIRRV 604

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              + +     +       +N++ + L D E+ + +  +   T   PSRI    +E+  +
Sbjct: 605 LTHMAN---PGSGFKGRYSVNLSGQSLCDIEMLDFITKIFRHTRVDPSRICFEITETAAI 661

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            N +++   +  LR +G    LDDFG   S   YL  +  D +K +GS +    E     
Sbjct: 662 ANLDQASRFMKELRGLGCRFALDDFGVGMSSFGYLRDLKVDYIKIDGSFVRDMAEDPIHH 721

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           A++ SI  +   +    +A+ +     +  L  +G DY Q   +  P    
Sbjct: 722 AMVESIHHIGHVMGLETVAEFVSDPRLLVSLREIGIDYGQGFGLHRPEPLE 772


>gi|269961990|ref|ZP_06176345.1| PAS domain S-box/GGDEF domain protein [Vibrio harveyi 1DA3]
 gi|269833313|gb|EEZ87417.1| PAS domain S-box/GGDEF domain protein [Vibrio harveyi 1DA3]
          Length = 679

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 134/535 (25%), Positives = 243/535 (45%), Gaps = 19/535 (3%)

Query: 427 RVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            ++  P  A +LGL +   + G     L +I  N +  F   + + +  +          
Sbjct: 152 IISANPASARLLGLNSPHELLGEELTRL-FIDENSKKVFTHRISTLLSEK--PFVCLTSA 208

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNR 544
           R    +   +      +  S   I+    +  D  +  K        +A  D+LT + NR
Sbjct: 209 RCGFERKVQLHADTTAILGSESQII----LIQDADDAPKLLSSNSNEDAHIDSLTKLYNR 264

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F  RL  ++            V  +DID +K IND LG  +GD V+  ++ R+   L 
Sbjct: 265 FGFTKRLEQLIK-----SQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRSLP 319

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              I+  L G+ FGIIL    N+      +  +   I  P +L      +  SIG   + 
Sbjct: 320 NQAIIGHLGGDEFGIILPEPENTRMAEILSERIISLINQPFDLHHFSKRLACSIGSVRYP 379

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYL 722
                +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L +
Sbjct: 380 EDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEV 439

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +   D  I G EAL++W HP  G IS   F+ +AE   +I+ +   ++  +   +
Sbjct: 440 WYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAERAGLIEHLGRVVMRDVFNTV 499

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W     + P  + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E
Sbjct: 500 KRW-KLQGILPGRVAINLSPEQFGNPQLIDYMEKLLRTTELDPSCITFELTESAVMSDSE 558

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900
            +  +L  ++K+G +L++DDFGT  S LSYL   P D +K + + +       K++ ++ 
Sbjct: 559 HTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTLPKQVTVIE 618

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +II + K+++ T++A+ +        L+ + C+ IQ  H   P   + + +L  +
Sbjct: 619 NIINLGKSLDLTVVAEGVETHQQATLLSNLQCNSIQGFHFYRPQPKHEVEELFAQ 673


>gi|312623233|ref|YP_004024846.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203700|gb|ADQ47027.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 549

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 209/436 (47%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LT +PNR  F+  L   +  +      +  +M IDID + KIN+ L
Sbjct: 115 KNQEKIKELAYFDQLTNLPNRNHFMLALEKAIRDA-HFKGQQLALMCIDIDNFSKINNTL 173

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL  + +R+ E +     +ARL+G+ FGII+ +  +   +  F   +    ++
Sbjct: 174 GHATGDVVLKEIAQRLKEAVGNNGFVARLTGDEFGIIIYNFLDFNVLNYFIYKIFNLFSI 233

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              ++E    +T S+G A + S       +LKNA+ A+  AK +G N    + +      
Sbjct: 234 SWEIMEYNFNITPSMGIAIYPSDGQDGISLLKNADKALKLAKEKGKNTFCFYNLEMDNIL 293

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   DL  A+E  +  L Y PI+ L   +I G EALI+W HP+ G I    F+ IA
Sbjct: 294 QQRLEFESDLKKAIEKDQFVLYYQPIVDLEKMQICGAEALIRWIHPQKGLIPPMSFIPIA 353

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L ++  D+ S RD       +I  N + ++         +   I   
Sbjct: 354 EQTGLISQIGQWVLAKVISDLKSIRDVT-NHNFYISFNASLREFSSANFVGNVLHTIEAL 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + +  +ESV M +P+ +   L  L++ GI + LDDFGT  S L+YL  +P D V
Sbjct: 413 KGDSNSLGIEITESVAMADPQNTIKSLNTLKEKGIKVFLDDFGTGYSSLNYLKQLPIDVV 472

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   +       I +S+I ++  ++  ++A+ I      + L    CD+ Q   
Sbjct: 473 KIDRSFIANMSTDTKEQKIAKSLIDLSHILDLKVVAEGIEDSQQAEILKAFKCDFGQGYL 532

Query: 940 VASPLGFNSILKLLKE 955
              PL  +  ++  K 
Sbjct: 533 FGKPLPKDQFIEFAKR 548


>gi|94314522|ref|YP_587731.1| hypothetical protein Rmet_5603 [Cupriavidus metallidurans CH34]
 gi|93358374|gb|ABF12462.1| conserved hypothetical protein; putative PAS, GGDEF and EAL domains
           [Cupriavidus metallidurans CH34]
          Length = 589

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/544 (22%), Positives = 230/544 (42%), Gaps = 12/544 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  SG +    D+    +  T   A +L      +     + L  I +  R+    +L +
Sbjct: 33  LEASGALAMRVDMQGRILEATEATAELLVYPREYLLRT--SILDIIALESRERV-AMLLT 89

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                +   +   RV       +W+ +R+    +++      +    DIT   +S   + 
Sbjct: 90  CCAQDQTMRRERVRVAGGIGGPNWLDLRVSYHRDADDAPS-LLLFGQDITHWVESERDLT 148

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             AF D LTG+ NR     R+      S         V ++D+D +K +ND LG   GD 
Sbjct: 149 ERAFLDPLTGVGNRAYIGKRIEEY--TSGRRAGQPFAVALMDLDGFKNVNDSLGHEFGDA 206

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R+ + ++    +ARL G+ F ++L    +          +      P  L   
Sbjct: 207 LLKEVGTRLQDTVRTRQSVARLGGDEFVLMLDDMESEADAIRILERVIHVCRQPFLLGGC 266

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++ +T SIG A    S  + S+ L+ A+LAMY AK  G N    +         ++  I+
Sbjct: 267 QVRITTSIGLAFSNGSAQSESQWLRRADLAMYEAKALGKNRYCIYSPELDRRLDEQFQIE 326

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           + +  AV+N E  L Y PI+     E+  +EAL++W+H          F+ +AE+  +IK
Sbjct: 327 QSMFEAVQNGEFLLHYQPIVWPGSGEVCAVEALMRWEHAGRDIRP-DVFIPVAEKNGLIK 385

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  + L      + +W          + +N+++   L     + ++  I ++     R+
Sbjct: 386 HLGAWALRCACAQLAAWDALGIHVG-HMSVNVSAVQFLHPGFFDSVRNAIQESGIGADRL 444

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES +M +P+ +  LL  LR +GI   +DDFGT  S LSYL   P   +K + S +
Sbjct: 445 LLEITESALMTDPKAAEELLLSLRALGIRFAVDDFGTGYSSLSYLRRFPLSALKVDRSFV 504

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +     I+ +++ +A+ +    IA+ +  +   K L   GC+ +Q    A  +  
Sbjct: 505 ADMVDSPHARTIVSAVLSLARELGLVAIAEGVETDAQNKLLAAQGCNLVQGWRFARAVAA 564

Query: 947 NSIL 950
               
Sbjct: 565 ADFE 568


>gi|218892855|ref|YP_002441724.1| putative sensor protein [Pseudomonas aeruginosa LESB58]
 gi|218773083|emb|CAW28895.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 1120

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/582 (20%), Positives = 238/582 (40%), Gaps = 13/582 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      ++ +  + ER  + +   GD V   D         P    + G    
Sbjct: 534  IGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQ 593

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRP 501
               G         +  +  +   + +   +   R     +   + +   + H +     P
Sbjct: 594  DAIGAPHELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAP 653

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G+I+  + +  ++T+ +     +  +A  D LTG+ NR  F + L   L  +   
Sbjct: 654  VRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQER 713

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               +  +  ID+D++K +ND  G A GD +L  L+R + +  +  D LARL G+ FG++L
Sbjct: 714  A-TQHALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLL 772

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + +      +  + +  ++      R   V ASIG  + T++  ++SE++  A++A 
Sbjct: 773  FDCDLAEAEQVASKLIEQICSVRFPWEGRLYDVGASIGITALTATSRSTSELMSQADVAC 832

Query: 682  YHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-- 735
            Y AKH G N V  ++        +   +++   L  A+EN    L    I+ +       
Sbjct: 833  YAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVGPRRDGD 892

Query: 736  VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
               E L++   P         F+  AE   ++ +I+ +++     +  +    A +  + 
Sbjct: 893  RHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEALINFGA--RIAAVEGLS 950

Query: 796  ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            I IN++   L D      +   I  +   P R+    +E+ +M     +  ++ +LR +G
Sbjct: 951  IGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVASRIVAKLRDLG 1010

Query: 856  ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
              + LDDFG+  S  +YL     D +K +GS +          AI+ SI  +A  +    
Sbjct: 1011 CKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVT 1070

Query: 914  IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +     +  L  +G D+ Q   V  P  F ++L  L+ 
Sbjct: 1071 VAEFVESREILDHLACLGVDFAQGYAVGRPQPFATVLDQLRS 1112



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 1/152 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V     T ++ + +            ER  LA       +W+WD+ R+R+     +  + 
Sbjct: 401 VAQYFVTQVEDIDSRKRAELERERLAERIKLATDAGQIGIWEWDLARNRLHWDFRMFDLY 460

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G+ SG     +  W   +H  D D     L+  V   + +   EFR+   + +   +   
Sbjct: 461 GIRSGPGETTVEQWKASLHAEDHDRVLRELERAVSGLQ-KFDCEFRIVRPNREVRHLRAI 519

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                + +   +R IGI +DITE +   E + 
Sbjct: 520 ATLTRDEDNRPVRMIGINSDITEIRTLAETLH 551



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 106/363 (29%), Gaps = 18/363 (4%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF--AMAWVVLGYI 232
           LW    +     S  ++  +++ +  +   F    +   R           +   V   +
Sbjct: 82  LWMSAAFLPANLSEAIFAAMLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVL 141

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
              FG        P      +   +   L+   +        W   HA  G         
Sbjct: 142 VSVFGMGRF----PEMWARWYVGDAMGMLALLPLCMASNLAAWR--HALSGRAGVDNAML 195

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           + +   +SF             L  +++      ++         +  +    +  +  +
Sbjct: 196 LLVTLVISFVALTRLPYAFIYVLLPLLVAAASTSVFGTA-----LIGCLNTCFIAVLIAL 250

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
           G+++  + +         L   L LI   +   +++    +      +     +   A+ 
Sbjct: 251 GVFVPESSQQRFGEPLLYLPMALTLIPAFLVSVIME---RSRREQHQVAIGEAQFRGAME 307

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            S   +    +          +  +LG ++  +     ++    +++D +    ++   +
Sbjct: 308 FSAIGMALVSLEGRLFKVNEALCRMLGYSAERLG--ELSFQEITYVDDLELDLDLVRDLL 365

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R    Q E R    D +  W  I +  + +  G    ++    DI  +K++       
Sbjct: 366 AGRINSYQMEKRYLRQDGETFWARISVSLVRDEEGVAQYFVTQVEDIDSRKRAELERERL 425

Query: 533 AFQ 535
           A +
Sbjct: 426 AER 428


>gi|86148607|ref|ZP_01066890.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. MED222]
 gi|218710435|ref|YP_002418056.1| c-di-GMP phosphodiesterase A-like protein [Vibrio splendidus LGP32]
 gi|85833598|gb|EAQ51773.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. MED222]
 gi|218323454|emb|CAV19631.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           LGP32]
          Length = 679

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 131/532 (24%), Positives = 239/532 (44%), Gaps = 21/532 (3%)

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            P  A +LG  S +          +I    +  F   L S +            +     
Sbjct: 156 NPAAARLLGFNSTTELIGEELGRLFIDEQTKTVFNNDLSSIISESG--------LVCLTG 207

Query: 491 QFHWMIIRIRPMSNSN---GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                  +++   +S    G   + + I +     K+       +A+ D LT + NR  F
Sbjct: 208 ARCGFERKVQLNIDSTVILGSSTQLVLIQDAQETTKQYTPANSEDAYIDTLTKLYNRLGF 267

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   +      +     ++ +DID +K IND LG  +GD V+  +  R+   L    
Sbjct: 268 TKSLEQFI-----HNKTPVVMLYLDIDNFKNINDSLGHHIGDKVIKEVASRLKRQLPRQA 322

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           I+  L G+ FGIIL    +       +  +   I  P +L      +  SIG  S+    
Sbjct: 323 IIGHLGGDEFGIILPEPEHPRTPEILSEKIISLINQPFDLHHFSKRLACSIGSVSFPHDG 382

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
             +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y 
Sbjct: 383 SDARILLQNADTAMYEAKDRGRNRLIKFNEQMNKEARMRLWLEIELQKALQQNGLEVWYQ 442

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +   D  I G EAL++W HP  G IS + F+ +AE   +I+ +   ++  +   +  W
Sbjct: 443 PKVNARDFTINGAEALVRWKHPVEGYISPAAFIPVAERAGLIEQLGRVVMREVFATVKRW 502

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           + Q  + P  + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E + 
Sbjct: 503 KMQ-GILPGRVAINLSPEQFGNPKLIDFMEKLLRSTELDPSAITFELTESAVMSDSEHTL 561

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
            +L  ++++G +L++DDFGT  S LSYL   P D +K + + ++      K+I ++ +II
Sbjct: 562 QMLNAIKRLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFISDIDTLPKQITVIENII 621

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + K+++ T++A+ +        L+ + C  IQ  H   P     + +L  +
Sbjct: 622 NLGKSLDLTVVAEGVETSEQATLLSNLNCGSIQGFHFYRPQPKQEVEELFAQ 673


>gi|300717186|ref|YP_003741989.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299063022|emb|CAX60142.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 725

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 224/436 (51%), Gaps = 12/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  AF D LTG+PNR    +RLT  L     + + +  ++++D+D++K IND  G 
Sbjct: 294 EAQAQHLAFHDVLTGLPNRAMVEERLTQALGRLMRNGD-KVALLLLDLDRFKLINDTYGH 352

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GDD+++ +  R+  L+   + + RL G+ F +IL   ++  +I      +  +++ P 
Sbjct: 353 HAGDDLIIEVGHRVSSLVGEQNTVGRLGGDEFVVILDVVSSPREIQTMCEQIIVALSRPF 412

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            LL  +  +  SIG A      +  SEM++ A++A+Y AK +G      F  +       
Sbjct: 413 TLLGSDTWIGVSIGVAIAPEDAVDRSEMMRKADIALYEAKSQGRGQYRVFERAMDESVKT 472

Query: 704 RVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           R  I  DL LA++   +L + Y P++ +  +++V LEAL++W+HP  G IS SEF+ +AE
Sbjct: 473 RQQIAADLRLAMQTKKDLAVFYQPLMDISGQKVVALEALMRWNHPVHGAISPSEFIPLAE 532

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E+ +I  I  ++L    R  + W      P + I +N++          E  +A++ +  
Sbjct: 533 EMGLIIQIGEWVLREACRVSLKW------PDLTIAVNVSPLQFRAAGFVERFKAIVKQEK 586

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              +RI+L  +E V++ + + ++  + +LR+ G  + LDDFGT  S L+YL +   D +K
Sbjct: 587 TLATRIELEVTEGVLIEDEKGAQETMKKLREAGFRIALDDFGTGYSSLNYLSHFSVDKIK 646

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S     G TE  +AI+ S++ + + +  T+ A+ +     +  L   GC+ +Q    
Sbjct: 647 IDRSFTQSLGVTENSMAIIESVVKLGQAMGLTVTAEGVETHGQMAALAEAGCNQLQGYLF 706

Query: 941 ASPLGFNSILKLLKER 956
           +  +    I++LL +R
Sbjct: 707 SQAVSEEHIVELLAQR 722


>gi|153835035|ref|ZP_01987702.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148868512|gb|EDL67611.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 679

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 134/535 (25%), Positives = 243/535 (45%), Gaps = 19/535 (3%)

Query: 427 RVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            ++  P  A +LGL +   + G     L +I  N +  F   + + +  +          
Sbjct: 152 IISANPASARLLGLNSPHELLGEELTRL-FIDENSKKVFTHRISTLLSEK--PFVCLTSA 208

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNR 544
           R    +   +      +  S   I+    +  D  +  K        +A  D+LT + NR
Sbjct: 209 RCGFERKVQLHADTTAILGSESQII----LIQDADDAPKLLSSNSNEDAHIDSLTKLYNR 264

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F  RL  ++            V  +DID +K IND LG  +GD V+  ++ R+   L 
Sbjct: 265 FGFTKRLEQLIK-----SQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRSLP 319

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              I+  L G+ FGIIL    N+      +  +   I  P +L      +  SIG   + 
Sbjct: 320 NQAIIGHLGGDEFGIILPEPENTRMAEILSERIISLINQPFDLHHFSKRLACSIGSVRYP 379

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYL 722
                +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L +
Sbjct: 380 EDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEV 439

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +   D  I G EAL++W HP  G IS   F+ +AE   +I+ +   ++  +   +
Sbjct: 440 WYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAERAGLIEHLGRVVMRDVFNTV 499

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W     + P  + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E
Sbjct: 500 KRW-KLQGILPGRVAINLSPEQFGNPQLIDYMEKLLRTTELDPSCITFELTESAVMSDSE 558

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900
            +  +L  ++K+G +L++DDFGT  S LSYL   P D +K + + +       K++ ++ 
Sbjct: 559 HTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTLPKQVTVIE 618

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +II + K+++ T++A+ +        L+ + C+ IQ  H   P   + + +L  +
Sbjct: 619 NIINLGKSLDLTVVAEGVETHQQATLLSNLQCNSIQGFHFYRPQPKHEVEELFAQ 673


>gi|209523283|ref|ZP_03271839.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496434|gb|EDZ96733.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 852

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 124/427 (29%), Positives = 229/427 (53%), Gaps = 9/427 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +P R     ++  +   S    + +  ++ +DID+++ IN+  G A+GD +L+S
Sbjct: 424 YDILTDLPTRTLLNQKIQRL---SHHPKSTQIALLFVDIDRFRLINEGFGHAIGDQLLIS 480

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            T+R+ + L    ILAR+ G+ F +++ +  N  +    A  ++K++A P  L  +++  
Sbjct: 481 TTQRMKKCLSSQTILARVGGDEFAVMMPNIKNIDQAIAMANKLQKALAAPFYLNGQQVYT 540

Query: 655 TASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
           T SIG A    ++   ++++L++A  AMY AK  G +  + +  +       ++ ++ DL
Sbjct: 541 TISIGIAYSNQNQDLIANDLLRDAHTAMYRAKALGNSRYQVYISTMKSHALQQLQLEADL 600

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++N E  L Y PI+ L   +I G EAL++W  P+ G +S  EF+ ++EE  +I  + 
Sbjct: 601 REAIKNQEFQLYYQPIMNLKTNQIAGFEALVRWISPQRGFVSPGEFIPVSEESGLIIPLG 660

Query: 772 LFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            ++L    R +  W  +    PP  + IN++++      L E +  ++++T    S IKL
Sbjct: 661 EWILLEGCRQLAIWNQKYCQNPPFMLSINLSTRQFSQVNLIECVDQILTQTGVDRSCIKL 720

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +M + + +  LL RL+ +GI L++DDFGT  S LSYL   P DT+K + S +  
Sbjct: 721 EITESAIMDDVDEAIALLERLKALGIKLSMDDFGTGYSSLSYLHRFPIDTLKVDQSFVRR 780

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             + +    I+++II +  N+   I+A+ I  E +++ L  + C+Y Q    + PL   +
Sbjct: 781 MDDSQQNTEIVKTIIMLGHNLNMDIVAEGIETEGNVQTLKNLNCEYGQGYFFSKPLPVTA 840

Query: 949 ILKLLKE 955
           +  LL  
Sbjct: 841 LEDLLNR 847


>gi|254513943|ref|ZP_05126004.1| developmental regulator MorA [gamma proteobacterium NOR5-3]
 gi|219676186|gb|EED32551.1| developmental regulator MorA [gamma proteobacterium NOR5-3]
          Length = 788

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 233/453 (51%), Gaps = 23/453 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE +     +   A+ DNLT +PNR+ F ++LT +L L+   +     ++ +DID +K+
Sbjct: 313 VTETR---SKLRHAAYFDNLTSLPNRKLFTEQLTLLLRLAQRSNQ-NVGLLHVDIDNFKR 368

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDIL-------------ARLSGNRFGIILISEN 625
           IND LG A GD +L  +++R+   ++  D+L             +RL G+ F ++L    
Sbjct: 369 INDSLGPAAGDRLLREVSQRLAAGVRDSDVLHRRSDEDSSVMDLSRLGGDEFTVVLNQIE 428

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A  +  ++A P  +  +E+ VT+SIG A       T   +L+ A+ AM +AK
Sbjct: 429 SVDMAKRVADRLASAVAEPYLIDRQEVIVTSSIGIALAPDHADTVESLLRAADTAMVNAK 488

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N V  +  +      +R+ ++ DL  A+E  +L L Y P +     E+ G E+L++
Sbjct: 489 KRGRNRVVVYDDTMESANRERLQLENDLRRALELGQLLLHYQPQVNARTGEVTGAESLVR 548

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP  G I   +++ IAEEL +I  +  ++L +   D+I  R   +  P  I +N+++ 
Sbjct: 549 WNHPDKGLIPPFKWIPIAEELGLIDDVGEWVLRKACADLIELRASGHSLP-KISVNVSAL 607

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D +    +Q+ + ++   P  +++  +E V++ N E    ++  L+ +G+ L++DDF
Sbjct: 608 QFHD-DFVATVQSALQESGLPPESLEIELTEGVMVSNQESIVTMVHNLKDMGLRLSIDDF 666

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P D +K + S + G  + +    ++R+II MAK++   I+ + +   
Sbjct: 667 GTGYSSLSYLTRFPLDELKIDRSFVLGLAKGKQNVELVRAIIAMAKSLGLEIVVEGVERL 726

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +++       D IQ    + P+    + +LL 
Sbjct: 727 EELEFFRNQDVDIIQGFLFSQPVPLERLRELLA 759


>gi|170726564|ref|YP_001760590.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908]
 gi|169811911|gb|ACA86495.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella woodyi ATCC 51908]
          Length = 742

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/594 (21%), Positives = 261/594 (43%), Gaps = 31/594 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           + +        LA+    +      +R  +         +   + +   +   P    +L
Sbjct: 163 MDLVLIREAARLASLAIERSRALQFQRLTANIFNHLPMAMVITNQLGSILDANPTFYQML 222

Query: 439 GLASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHW 494
                  H   P   +    H          L+S +   +     Q E      D +   
Sbjct: 223 NACPDKYHHFEPEIFFKSSGH---------KLNSMLAQLKLKESWQGELLGCRLDGEHFH 273

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + +    +   D   Y  + +DI+E+KK+ E I   A  D+LT + NR      +   
Sbjct: 274 LDLTVSVFKDPASDERLYSWLFSDISERKKASEIIDFQANYDSLTHLANRNHLFKAMNAE 333

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++    +       M++D+D +K++ND LG   GD +L ++ +RI   +K   +LARL G
Sbjct: 334 IESDRLNPG--FGFMLMDLDNFKQVNDTLGHDKGDQLLQAVCKRIQACIKESALLARLGG 391

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT-ASIGFASWTSSKITSSEM 673
           + F ++L       ++   A  + +++++P  L   +  +T  SIG A +    ++  ++
Sbjct: 392 DEFALLLPDMVKECELQLLANEINEAVSVPYILGGDKQVLTSISIGIARFPEDAMSLEQV 451

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L  A+ AMY +K  G N    F     ++      +   L LA+E++   L + PI+ L 
Sbjct: 452 LNCADQAMYISKDEGRNCFHFFTEQMQQNAEYTAKMHTSLKLALESNAFELYFQPILCLD 511

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +IV  E L++W   +   I + EF+ +AE   +I  I  ++ +     +I  +     
Sbjct: 512 THQIVRAEVLLRWQD-EGQFIPTDEFIALAESSGLIVDIGHWVRQEAMSFLIELQ--NIA 568

Query: 792 PPIFILINIASKDL----LDNELCEGMQALISKTLYSP---SRIKLSFSESVVMGNPERS 844
           P I + IN++  +     L + L   +Q +  +          + +  +ES++M      
Sbjct: 569 PDIGLSINVSMYEFWSHSLQDNLVNSIQHIAKELSCDAFPFEMVTIEITESLLMKQHTHL 628

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
              L +LR++GI + +DDFGT  S LSYL + P D +K + S +     ++K+ A++ +I
Sbjct: 629 IDSLNKLREMGIKIAVDDFGTGYSSLSYLSHFPIDQIKIDKSFIQDSGISKKQQALVEAI 688

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++  +E  +IA+ +  + +++ +   G + +Q  +   P+  +S+++LL +R
Sbjct: 689 TTLSHALELHVIAEGVETKEELQFVKNAGIEAVQGYYFYRPMTKSSLIELLNKR 742


>gi|115524947|ref|YP_781858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115518894|gb|ABJ06878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 802

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/768 (20%), Positives = 311/768 (40%), Gaps = 59/768 (7%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRAC---------SEIALSSSLIIFLFMYLH 274
           + W+ L  IS  FG  +              A            +A+           + 
Sbjct: 47  LMWLALVAISSGFGTWATHFIAMLAYHPSTHASYHLGLTLLSLALAILIIGAGAAVALIG 106

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
            +RW+A +G               +      +    ++ T+ + ++    F I   + G 
Sbjct: 107 PSRWYAGIGGAVIGLGIAAMHYCGILAMQAPLLLIWSQETVLASIVLAVAFSIPGAIIGA 166

Query: 335 ER--------AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL----- 381
            R        A LL  A +L   +     +      D   + PAL    + +VI      
Sbjct: 167 RRDELGYMLLASLLFAASVLSLHFTAMSAITALPDPDQTAVGPALTAPSLALVIAGAAAA 226

Query: 382 -----IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
                +   +           Q +        +A+      +  +D   +        A 
Sbjct: 227 ILGGCLIAALTDRRFRAVNARQKLL-----LDIAIENMPQALCMFDAEGNSTLFNSHYAD 281

Query: 437 ILGLASGSMHG-PIRNWLPYI--H---INDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           ++G+ +  ++G  + +       H     D       + + +   R  ++ +  +     
Sbjct: 282 LMGIPADRLNGMNLLDQFELRKSHGKLAGDPRAIYESIMAQISAGRPIVKTDNLIVPG-- 339

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + I  +P+         ++    D+TE +K+ E I   A  D LT +PNR +F + 
Sbjct: 340 --RVLRITEQPLPG-----TGWVTTIEDVTEWRKTQERIAHLARHDALTDLPNRTTFREE 392

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +  +L  +  +      V+ ID+D +K+IND LG  +GD++L+ + RR+ + ++  D++A
Sbjct: 393 IDRVLRYTRREVGA--AVLYIDLDHFKEINDSLGHPIGDELLIEVARRLADCIRDGDLVA 450

Query: 611 RLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           RL G+ F +I IS +      A  A+ +   I+ P  L    +++ AS+G A   +    
Sbjct: 451 RLGGDEFAVIQISHHEPESDAAALAMRIVSIISTPYELQGHHVSIGASVGIALAPTDASE 510

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727
             E++K A+LA+Y AK  G      F +        R ++  +L LA+  +E  L+Y PI
Sbjct: 511 PDELIKKADLALYRAKAEGRGSYRFFELDMDASAQTRRLLTTELRLALARNEFALLYQPI 570

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             +  ++I+  EAL++W+HP+ G I   +F+ +AE   +I  I  ++L+    D   W  
Sbjct: 571 RDVESDQIICFEALLRWEHPERGEILPEQFLALAESSGLIVPIGDWVLQTACADAAQWHS 630

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   + +N++        L   + A ++ +  +P R++L  +E+ ++   + +   
Sbjct: 631 DVG-----VSVNLSPSQFRHPRLVPSVAAALTASGLAPHRLELEVTETALLQQRKPAMAA 685

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPM 905
           L  LR +G+ +++D FG   + LS L   PFD +K +GS +    +   A   L ++  +
Sbjct: 686 LKALRALGVGVSMDHFGAGYASLSSLSSFPFDRIKIDGSFIQEIEQSGDAFAALTAVTGL 745

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            K +  T  A  +     +  L   GC  IQ   ++ P   + + ++L
Sbjct: 746 GKRLGRTTAATGVETVHQLAMLRATGCAEIQGLLISPPRSAHEVKQIL 793


>gi|66573871|gb|AAY49281.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 928

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/587 (22%), Positives = 247/587 (42%), Gaps = 10/587 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++     +Q+V         I    E  +           + ++   R+  T +   I 
Sbjct: 339 ALVRVLGQLQNVTEQRQTDALIRWRTELLNRVSALGKIGGCEIEVDTRRMQWTEECYRIH 398

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL   ++   +   L     + RD F   L   V       Q E        Q  W+ + 
Sbjct: 399 GLRKENI--TLEQALSLYTQDSRDAFEAALLRIVDGGLPE-QLELCFYRNSGQRVWVQVL 455

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I       G   RY+ +  D++ ++++ E I   A  D LTG+PNR    ++    +  +
Sbjct: 456 IELDR-REGLPPRYVALFRDVSREREANERIELLAHYDRLTGLPNRFLLREQAENAIREA 514

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                +   +++ID+D +K IND  G A GD++L   + R+ + L+  D+  R S + F 
Sbjct: 515 HERGQV-MAMLLIDLDGFKSINDSFGHATGDNLLKLASSRLHQHLRNSDLFGRFSDDEFI 573

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L   +        A  +  ++  P+      + + ASIG A           +L+ A+
Sbjct: 574 VLLRDLSEPEDAGHVARKLISALGEPLRKDHVTLKLGASIGIALQGEGLSDFDSLLRAAD 633

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N    +          R+ ++  L  A+E  E  LVY P++  + +   
Sbjct: 634 AAMYAAKDSGRNTFHYYSQDVLLRAQRRLELEHALHGALEREEFTLVYQPLVNTVGDTSP 693

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W+ P  G  S +EF+ IAEE   I  +  +++    R  + W          I
Sbjct: 694 AIEALMRWNRPGHGPCSPAEFIPIAEECGEIVRLGEWVIGEACRQAVVWDRAGLHFS-RI 752

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++  L +    E +  +     +SP+R++L  +ES ++ + +  R       + G+
Sbjct: 753 AVNVSAVQLRERGFAERVLEICRDNGWSPARLELELTESALIRDSDSLRRCFELFEQNGV 812

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L YL   P   +K + S + G         + ++I+ +   +   ++
Sbjct: 813 LLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQGMLDDANTAEVTQAIVHLGHALGMQVV 872

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           A+ +    +   L + GCD IQ    + PL    + + L+E    ++
Sbjct: 873 AEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRDMAQWLREAEAGMR 919



 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH +D     
Sbjct: 108 RWEIGLDSADHGLWDWDIAADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPDDHAQVS 167

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   S+G  LR +G   D+   K 
Sbjct: 168 AAVQAHLDGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTSDGRPLRMVGTHTDVHHHKL 227

Query: 525 SLEGILCN 532
             + +   
Sbjct: 228 LEQQLREQ 235



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD ++D++  + D    LGLA   +H  +R+ L  
Sbjct: 228 LEQQLREQQAQLEEAQRIASMGSWGWDTLKDQLWVSQDFLQQLGLADLRLH-SVRDILRL 286

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +      + R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 287 LAGPSVAHLRSAWRK-IKHEGMPVHFELEINGRLGVNPHHLRVWAQPVFDGDGALVRVLG 345

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 346 QLQNVTEQRQTDALIRWR------TELLNR 369


>gi|283785416|ref|YP_003365281.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282948870|emb|CBG88472.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 667

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 124/565 (21%), Positives = 244/565 (43%), Gaps = 13/565 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +          V  +   +   D   +            GL    + G    +  ++
Sbjct: 103 ARDLMKGLAFAEQVVSEANSAIVILDSHGNIQRFNRLCEEYTGLKEQEVIGQ-SVFRLFM 161

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R  +  F        + E  V+    Q  ++       S S  + +  I   
Sbjct: 162 SKREAAASRRNISGFFRNGSA-YEIERWVKTRKGQRLFLFRNKFVHSGSGKNEIYLICSG 220

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++++ E +   A  D +TG+PNR +  + +   +  +      +  ++ +D+D +
Sbjct: 221 IDITEERRAQERLRVLANTDTITGLPNRNAIHELINEAIANA---SGGQVGIVYLDLDNF 277

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L +++  +   L+   ILARL G+ F I+L S  +   +   A  
Sbjct: 278 KKVNDAYGHMFGDQLLQAVSLALLSCLEENQILARLGGDEF-IVLASHTSQSSLEAVASR 336

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  P  +   E+    S+G A        S  +++NA+ AMY AK  G      F 
Sbjct: 337 ILTRLRQPFRIGLPEVYTGCSVGIAMAPQHGEDSHSLIRNADTAMYTAKEGGRGQFCVFS 396

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   + + +   L  A+EN +L + Y P +     E+  LEAL++W  P+ G I+ 
Sbjct: 397 PEMNERVFEYLWLDTHLRKALENDQLLIHYQPKVTWR-GEVRSLEALVRWQSPERGLIAP 455

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+  AEE  +I  +  ++L  + R +  WRD+     + + +NI+++ L D  +   +
Sbjct: 456 GEFISYAEESGLIVPLGRWVLLDVVRQVAKWRDKGIN--LRVAVNISARQLADQTIFTDL 513

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ +  +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S LS L 
Sbjct: 514 KQVLHELNFEYCPIDVELTESCLIENESLALSVIQQFSQLGAQVHLDDFGTGYSSLSQLT 573

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K +   +    +K    +++R+I+ +A+ +   +IA+ +    +   LT+ G 
Sbjct: 574 RFPIDAIKLDQIFVRDIHKKSVSQSMVRAIVAVAQALNLQVIAEGVESVKEDAFLTKNGV 633

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
           +  Q    A P+      +  K   
Sbjct: 634 NERQGFLFAKPMPAAVFERWYKRHL 658


>gi|171057021|ref|YP_001789370.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170774466|gb|ACB32605.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 679

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 133/595 (22%), Positives = 256/595 (43%), Gaps = 24/595 (4%)

Query: 364 NDIIQPALVGGLVLIVILIG-----FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
           N+       G  V++ +           +  +         +     R   A+L +  ++
Sbjct: 93  NERWTLYPGGTPVVLNLTYSGHRLDDGRMAMLSQGKPALDELPEST-RSVEALLHTAVMI 151

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
             +D+    +   P     +     ++          +     + F   L          
Sbjct: 152 TLYDLSGAPLYRNPAARASVRSPGETLRER------IVDPASGERFMAALAHEQAA---- 201

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             +   V  A  +  W  +  R   ++       +    D++  K +       A  D L
Sbjct: 202 -NFTLAVHTAQGE-RWHEMSARHCHDAVTGHDAVLVSEADVSALKHTEAQASFQALHDAL 259

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR   ++R    L     D  +   ++ ID+D +K +ND LG A GD++LV + RR
Sbjct: 260 TGLPNRAHVMERFAQALADI-RDAGMAAALIFIDLDHFKDVNDTLGHAAGDELLVHVARR 318

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   ++  D +ARL G+ F I++ S++   ++      + ++IA P++L   E+ VT ++
Sbjct: 319 LRNAIRSSDQVARLGGDEFLILVASKDIVGEVERVRQRISQAIAQPLSLSGTEVRVTPTL 378

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G + +    +    +L+NA+LAMY AK RG N +  +      + R    ++ DL  A+E
Sbjct: 379 GVSLYPRDGLDVETLLRNADLAMYCAKERGRNDMAYYEEGLAVAMRQRTSLEADLRHALE 438

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E  + Y P + +    +VG EAL++W  P+ G +   +F+ + E   +I  I L + E
Sbjct: 439 RDEFEVFYQPRVCVHTRRVVGAEALLRWRSPERGLVMPDDFIPVCESSGLIMPIGLRVFE 498

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           ++AR    W  +     + I +N++ +      L +G++A +      P+R+++  +ES+
Sbjct: 499 QVARQQAEWAARGLD--LQISVNLSPRQFSHPGLLDGIRAALRVAAGRPARLEIEITESM 556

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           ++   ER R +L     +G+S+ LDDFGT  S L+ L   P  TVK + + + G    R 
Sbjct: 557 LLARDERPREVLDAFEAMGMSIALDDFGTGYSNLAALQRYPIHTVKIDKTFIQGLDTDRP 616

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +   I+ M + +  T++A+ +     +  +     D  Q    A  L   +   
Sbjct: 617 -LADMIVSMCRLMRLTVVAEGVETCDQLDWIAGRAIDQYQGFLCARALPAAAFEA 670


>gi|170691808|ref|ZP_02882972.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
 gi|170143092|gb|EDT11256.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia graminis C4D1M]
          Length = 542

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/546 (22%), Positives = 248/546 (45%), Gaps = 16/546 (2%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +   D           +  + G ++  + G  R++       +    R  L S +     
Sbjct: 1   MLICDERGTFQFVNAALEKLTGWSADELIGR-RSFESLHDPAELARRRAELPS-LAEIGA 58

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------RYIGIANDITEQKKSLEGILC 531
           R + E+           +++ + P+   +          RY+G+  D+T   +S   +  
Sbjct: 59  RYEGEWTYLRRSGTSVRVVLALSPLPACSDATACHASDARYVGVVVDMTRYAQSEARLWY 118

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D +T +PN+  F +RL   +   A   +   TV++ ++D  +K+ D LG+   + V
Sbjct: 119 VSHHDGVTRLPNQTLFTERLELTISRCARS-HASFTVLIAELDHLRKLRDALGLHAAELV 177

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +  R+  L      +A + G +F +++     +          R  IA PI+     
Sbjct: 178 LQIVGERLRGLFPNDGTIASIGGTQFALLINETGAAADAFAAEALAR--IAEPIDYGGTA 235

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKE 709
           + + ASIG A++      ++ +++ A +A+  A    GN V  F        + R  I+ 
Sbjct: 236 LNIAASIGIAAYPDDGGDAATLMRRAGVALSAASAVNGNAVRRFSTALEGQAARRFQIET 295

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+   +L+LVY P + L +  I  +E L++W+HP+ G IS +EF+ +AEE  +I+ 
Sbjct: 296 MLREALGRRQLHLVYQPQVTLANGRIAQVETLLRWNHPQRGMISPAEFVPVAEESGLIEQ 355

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++    R+           P  + +N++ +     +L + ++  + +    PS ++
Sbjct: 356 IGEWVIRTACREAGRLLRLTGNLP-RVAVNVSPQQFRRPDLFDTIRDALDQAALDPSYLE 414

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E  ++G+ +++   L  LR++G+ + +DDFGT  S L+YL   P + +K + S + 
Sbjct: 415 VEITEGALLGDVDQALETLHALRELGVEIAVDDFGTGYSSLAYLTRFPLNRLKIDRSFVA 474

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             G+  + +A++ +II MA  +E  + A+ +       +L  +GCD  Q    + P+  +
Sbjct: 475 RMGNDPQSLALVGAIIAMAHALELRVTAEGVETPEQAAQLQALGCDEAQGFWFSRPVTAS 534

Query: 948 SILKLL 953
            +  LL
Sbjct: 535 GLRNLL 540


>gi|170727890|ref|YP_001761916.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813237|gb|ACA87821.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 677

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 210/430 (48%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +    N + +++ ID+D++K +ND L
Sbjct: 239 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKN-QFSMVFIDLDRFKNVNDSL 297

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + R +  ++     +ARL G+ F I+        + ADF   +   +  
Sbjct: 298 GHALGDKFLARIARVLERVVGDKGTVARLGGDEFVILADEIQTPDQAADFVDNLLIQLNT 357

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E  I   AS+G + +    +T+ +++++A++AMY AK  G N    F+       
Sbjct: 358 PMQLNEHTIHPAASVGISIYPDDGMTAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERA 417

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N E  L Y P   +   +I+  EALI+W       IS   F+ +A
Sbjct: 418 AVRLRTEASLHDALKNEEFLLHYQPKFDIKTGKILACEALIRWK-KDGRLISPLSFIPVA 476

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  +++E   + +  W        + I +N+AS+   D  L   ++ L  + 
Sbjct: 477 EETGIIIPIGRWVIEEACKTLREW-KIKYNFALPIAVNVASQQFADASLVPDIKQLALRY 535

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  +++  +E+ +M + E +   L +L+  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 536 QISPELLEIEITETSLMNDIELAISKLQQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTM 595

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   +T    +  AI  +I+ + K +   ++A+ I  E  +  L+   C   Q  + +
Sbjct: 596 KIDRCFVTDL-PQESAIASTILMLGKQLNLKVVAEGIETEEQLNWLSSNECQIGQGFYFS 654

Query: 942 SPLGFNSILK 951
            P+  +  + 
Sbjct: 655 KPVEHDEFVD 664


>gi|331007698|ref|ZP_08330830.1| EAL/GGDEF/PAS/PAC-domain containing protein [gamma proteobacterium
           IMCC1989]
 gi|330418487|gb|EGG93021.1| EAL/GGDEF/PAS/PAC-domain containing protein [gamma proteobacterium
           IMCC1989]
          Length = 723

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 135/471 (28%), Positives = 242/471 (51%), Gaps = 14/471 (2%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           Q   + +  + +      ++   G+  DITE+++ +E +      D LTG+PNR S    
Sbjct: 245 QPRHLKLSAQGVVEEE-CLVGIWGVTQDITERREYIEQLEYQNTHDLLTGLPNRTSLQQS 303

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDIL 609
           + + +++ + ++ L    M+ID+D +K +ND LG  VGD ++  +  R+ ++L+    ++
Sbjct: 304 VESSIEVLSENEKLIF--MIIDLDSFKDVNDTLGHDVGDKIIQEIGPRLQKVLQDTSSVI 361

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL-----EREITVTASIGFASWT 664
           ARL G+ F I+L    +   I   A  +   I     +        E+ + AS+G A + 
Sbjct: 362 ARLGGDEFAIMLTGVEDIASIDRIARLLLSCIRQYFYVNSSETSNTEVEIRASVGVAIYP 421

Query: 665 SSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
                 S +L+ A++AMY AK    G         +    R+ +  +L  A+  S+L L 
Sbjct: 422 DQADDFSTLLRYADVAMYCAKEDMSGVAFYDTERDAHSPKRLSLMSELGKAIRGSDLTLY 481

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P I L D+ IVG+EAL +W HP  G IS +EF+ +AE   +I  +  ++L    R I 
Sbjct: 482 FQPKISLHDQRIVGVEALSRWVHPTMGFISPAEFVPVAEMTDLINDMTDWVLNESLRQIK 541

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            WRD+     I + +NI++++L     C+ ++ L+++     S ++L  +ES +M + E+
Sbjct: 542 EWRDRGLE--IAVAVNISARNLQQEGFCDMVRELLTRHDLPASCLELEITESTIMKHMEK 599

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           + L+L  L ++GI L++DDFGT  S L+YL  +P   +K + S +      E+   I+ S
Sbjct: 600 TLLVLKELNEMGIDLSIDDFGTGYSSLAYLKRLPVKRLKIDYSFIINMMENEQDQVIVSS 659

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            I MA N+   ++A+ +  E    +L  MGC+  Q  H+A P+  N + + 
Sbjct: 660 TIHMAHNLGLWVVAEGVETEALQHQLAGMGCEQAQGFHIARPMPANELEEW 710


>gi|146308214|ref|YP_001188679.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576415|gb|ABP85947.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 726

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 236/467 (50%), Gaps = 15/467 (3%)

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              R + +   D+ R   +   + + K SLE +   A  D LT + NR+ F       L+
Sbjct: 257 WVGRKLDDKERDLQRVNNLLMQLDQAKASLEQV---AHFDPLTELLNRRGFNRVFAATLE 313

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A        VM +D+D +K++ND LG   GD++L  + +RI   L+  DI+AR  G+ 
Sbjct: 314 EHAITGR-SLAVMFLDVDHFKRVNDTLGHDAGDELLRVVAQRIRGSLRERDIIARFGGDE 372

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  ++ S +++      A  + + +  PI+L  R I +T S+G + +     ++ E+LK+
Sbjct: 373 F-CVVASLDSNAAPRVLAQRILEQMKEPISLTGRRIVMTTSVGISLFPQDGNSAEELLKH 431

Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDE 733
           A+LA+Y +K  G N V  F        S  + ++EDL  A  +++ L L Y PII L   
Sbjct: 432 ADLALYQSKGSGRNVVHFFNPHLKQKASFELQLEEDLRQALQQDNGLMLFYQPIIDLRSG 491

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +  LEAL++W HP  G ++   F+ IAE    I  ++ ++L R   D+ S  +    P 
Sbjct: 492 ALSKLEALVRWHHPLHGLLTPERFIAIAEANGFIDQLDDWVLRRACHDLNSL-EHMGYPG 550

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + I +N ++ +L +++L   ++  +  T      ++L  +ES ++ N  R+  LL R+R 
Sbjct: 551 LKIAVNCSALNLANDQLPGRIEQHLQATRCPAQCLELEVTESALLSNINRAIGLLERIRA 610

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G+ L++DDFGT  S L+YL  +P DT+K + S +     + +   I+ +II MA  +  
Sbjct: 611 LGVCLSIDDFGTGYSSLAYLRRLPLDTLKIDRSFIQDLANSNQDREIVHAIIAMAHALHL 670

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            ++A+ +     +  L   GCD +Q    + PL    I+     RFP
Sbjct: 671 KVVAEGVETGEQLAFLQDRGCDQVQGYLFSKPLPLEEIV----SRFP 713


>gi|120612174|ref|YP_971852.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acidovorax citrulli AAC00-1]
 gi|120590638|gb|ABM34078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax citrulli AAC00-1]
          Length = 872

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/580 (20%), Positives = 243/580 (41%), Gaps = 28/580 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             + A       +     R       S D +W+ D        +   + + G   G   G
Sbjct: 291 AQLQALRASQAELQGSERRFRDMAETSSDWLWETDAQGRLTYLSDRFSQVAGHRRGDWLG 350

Query: 448 PIRNWLPYIHINDRDNFRTILDSF------VGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                   +        +  L+              R     R+  +        +  R 
Sbjct: 351 RPLA--DLLRPEGGQPLQPWLERADGRGPAEADGAARDTLLCRIDDSSGLQRICRVTARA 408

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +    G+   + G A ++T++ ++   +   +  D LTG+PNR+     L T+L+  +  
Sbjct: 409 I----GEGQGFRGTATNLTDEWQAQARVRHLSLHDTLTGLPNRRRLHQFLATLLE--SDG 462

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ +D+D++K +ND LG A+GD VL  + RR+  LL   DI ARL G+ F ++L
Sbjct: 463 PAQPLALLCLDLDRFKPVNDALGHALGDRVLQEVARRLQALLGPQDIAARLGGDEFVLVL 522

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +   I     A+  ++  P     + + +  SIG         T+ E+L+  ++A+
Sbjct: 523 AGAQDPDAIGRRCAAVVAALCEPFAFDGQIVCIGTSIGVVQAPLHARTAQELLRKGDIAL 582

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    +     +  + R+ +++DL +A+   ++ L Y P   +    +  LE
Sbjct: 583 YDAKAAGRNTWRCYTDALDAQAAARLRMEQDLRVALRTGQMRLHYQPCYAVDGGALRSLE 642

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP  G +   EF+ +A E  +I+ +  ++L     D   W        + + +N
Sbjct: 643 ALVRWQHPVRGMLQPEEFLPLARETGLIRPLGEWVLRTACLDAAGWPR-----GVRVSVN 697

Query: 800 IASKDLLD-----NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           +++           +L   + A +  +     R++L  +E +++ + + +   L  L++ 
Sbjct: 698 LSAGQFGSAGPQAADLPSVVAAALRDSGLPARRLELEINEGILLTHGDEALQALAALKQQ 757

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           G+ LTL DF +  S L+ L ++  D +K     +    E+    AI++++  +A  +  +
Sbjct: 758 GVWLTLADFASGYSSLACLRHLLPDGIKIGRGFVAQLPERAQDRAIVQAVGALAHALGVS 817

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + A+ +     +  L R  CD +Q  H +  L    + +L
Sbjct: 818 VRAEGVETRSQLDCLMRQPCDEVQGFHFSDALPPEQLDRL 857


>gi|310640945|ref|YP_003945703.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Paenibacillus polymyxa SC2]
 gi|309245895|gb|ADO55462.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Paenibacillus polymyxa SC2]
          Length = 713

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 221/435 (50%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +       A+ D++TG+PNR+    RL  IL  S   D     ++V++ID++K IN
Sbjct: 268 EKQAAESEFNHIAYNDDITGLPNRRRLSQRLDKILRNSLKSDET-VALLVLNIDRFKAIN 326

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   G+ +L ++  R+G   +  + +  + G+ F  +L+   +S  + +    M K 
Sbjct: 327 DSLGHTAGNYLLYAVGERLGHFCREGEAVFSMGGDEFAFLLMGYEDSDAMRNRIDDMVKL 386

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
              P ++      V  S+G A + S    S ++++ A+ A++ AK +G      +  +  
Sbjct: 387 FDQPFDINGESYHVMVSVGIALYPSDANQSEQLIQQADTAVHSAKEQGVNFQRYASAMQM 446

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ ++ DL  A+EN E  LVY P + L   E+  LEAL++W+HP  G +   +F+ 
Sbjct: 447 RAHERLQLENDLRRALENEEFSLVYQPRVHLQSGELTSLEALVRWNHPHRGMVMPGDFIP 506

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  +  ++L         W++    PPI I +N++ +     +L + ++ +++
Sbjct: 507 VAEESGLIVPLGEWVLREACLQNKQWQE-LGYPPIPISVNLSMRQFQQKKLVDVIRGILA 565

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   P  ++L  +ES+   + +R+   L +++ IG+++++DDFGT  S L YL  +P D
Sbjct: 566 YTGLEPRYLELEITESMTF-DKDRAFEQLKKIKAIGVAISIDDFGTGYSSLHYLKNLPID 624

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +       K  AI+ +I  MA +++  + A+ +  E  ++ L    C   Q 
Sbjct: 625 RLKIDRSFVNEVLIDSKNAAIVSTIASMAHHLKLKVTAEGVENEEQLQFLQAQDCHEGQG 684

Query: 938 SHVASPLGFNSILKL 952
            + + P+      KL
Sbjct: 685 YYFSRPIPAEVFEKL 699



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 62/223 (27%), Gaps = 19/223 (8%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMA------WVVLGYISIDFGFLSKLVNLPS 247
           I IG+A+++   L   + V  + +              +         F     ++    
Sbjct: 11  IGIGIAAIVLFVLVQLFHVTLNKIYSYNVFFLLYPIIGFACAAICFSIFYQSWSVLLEQL 70

Query: 248 GELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI-----AILFCMSFY 302
               +  A + +      ++ +  +   +     +       +  +     +I+      
Sbjct: 71  TWQRLLIAPTFLVAGLLYLVHIVSFSFVSLTDFALSPGISLWLLFVNRAFTSIMLLFVCS 130

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI--------PAWILIFIWFIGL 354
            P         T+A         +I   +K Y+  +  +          W L  +  + L
Sbjct: 131 LPFRRTKSEYKTVALWAGIGCTLLILGVIKAYDAGLPDLRIRYELGNLGWTLNLVVMLLL 190

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
            +     +           G++LIV  IG  V+  +       
Sbjct: 191 VLTFIFGVRKYRKVRPAELGMLLIVRGIGLCVVSQLFYLFAKQ 233


>gi|332531838|ref|ZP_08407723.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038814|gb|EGI75256.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 735

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 143/619 (23%), Positives = 263/619 (42%), Gaps = 26/619 (4%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLA 410
           +      T      ++   +     L   L+    +   L+         S  ++    A
Sbjct: 127 LVRARIRTHITAQGMLDRLIEKNFDLHDKLLEIESLAKELSQREEELKELSSKQKLFYQA 186

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           + G+ D V   D     +   P    I G   S S+   + +     H           D
Sbjct: 187 LTGTADGVVITDSNGKIIAVNPSFCRITGYCESDSLKMQLHDIKQNNHP------SISFD 240

Query: 470 SFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               +  + G    E   R  + + +  ++ +  +       + YIG+ +DI+  K + E
Sbjct: 241 QVWEHANQAGYWSGELVTRRKNGELYPELLTLSMVKGEQDTNVHYIGVFSDISSVKVTQE 300

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I    + D LTG+PNR  FL +L   L + +T+++    + +IDID +  IND LG+  
Sbjct: 301 RIHYLTWHDELTGLPNRNGFLKQLEQQLQVYSTENSYAY-IYIIDIDSFHSINDGLGLLA 359

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI------AMRKSI 641
           GD +L  LT+RI   +   D++ARL  + F ++   E    +    A+       +   I
Sbjct: 360 GDYILKELTKRIHSKVSKKDVIARLGSDEFAVLCTVEKGVGRARAQAMAENKAQELLIGI 419

Query: 642 AMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             P  +  +E+++T SIG   +       ++ E ++N E A Y AK +GGN V  F  S 
Sbjct: 420 NHPFKVDGQEVSLTVSIGTYIFPREDQWESAIETIRNCEAACYKAKEKGGNRVTFFDTSF 479

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  I++DL  A+ N+EL L         ++ + G E L++W+HP+ G IS  EF
Sbjct: 480 GEQAKRRFEIEQDLRKAISNNELSLYLQSQFD-RNQTLKGAEVLLRWEHPQKGFISPGEF 538

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  +I  ++ ++       +         P + + INI+ +   +      +   
Sbjct: 539 ISIAEESDIIYDLDCWVTSNALEILTQLSKT--HPELNLSINISGRHFHEARFLNFISQQ 596

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +   +P ++ +   E  ++ + E +   +  L+K+GI +++DDFGT  S L+YL  +P
Sbjct: 597 IKQHNINPQQLTIEIIEGTLLNHMEAAIEAVHFLKKLGIRVSIDDFGTGYSSLTYLKQLP 656

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +    +      I+  I+ + +  E  I+A+ +  +     L       +
Sbjct: 657 IQELKIDRSFVLEAPTDNNDKLIIDMIVSLGRLFELEIVAEGVENQSHFDLLQEYPEVIL 716

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  ++  P   +   K LK
Sbjct: 717 QGYYLHRPEPASDWFKKLK 735


>gi|299069173|emb|CBJ40428.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum CMR15]
          Length = 643

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 220/456 (48%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F +RL   L+ +         ++++D+D +K +ND L
Sbjct: 170 QAEAHLDYLAHVDSVTDLPNRHAFNERLREALESAGQAG--AIGLLLLDLDNFKVVNDTL 227

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILI-----SENNSLKI---AD 632
           G   GD +L  + RR+ ++++      +L R+ G+ F +I       +  +       + 
Sbjct: 228 GHNNGDRLLRQVARRLSDVIEQSNVRAVLCRIGGDEFAVIAELSRPGAIADPEAAGLSSA 287

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L   +I VTAS+G + +         + +NA+ AMY AK+RG N  
Sbjct: 288 LANRILAALAAPFALDLHQIYVTASVGVSLYPHDAGDVQSLTRNADAAMYSAKNRGKNAA 347

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII----------RLMDEEIVGLEA 740
             F     +  R  +  + DL  A+E+ EL LVY P I           +    + G+EA
Sbjct: 348 AYFTAEMDQQARRRLRVESDLRRALEHEELLLVYQPQIRLDALAEAGVHVCSTHVHGVEA 407

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  + L++L    +    W  +     + + +N+
Sbjct: 408 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGLWVLRTACQQAAQWLHEGRAT-LRVAVNL 466

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D  L E +  ++ +T   P  ++L  +ESV+M + + +  LL  L   G++L++
Sbjct: 467 SPRQARDPALAENVLGILRETGLPPHLLELEITESVLMEDIDANIRLLEALHAAGVNLSI 526

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K + S +        AI  ++I MA ++   ++A+ +  
Sbjct: 527 DDFGTGYSSLAYLQRFPIHKLKIDRSFVQRMPGDGEAIASAVIAMAHSLRMQVVAEGVEH 586

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L   GCD  Q    + PL    ++  L+ +
Sbjct: 587 AGQLAWLREAGCDLGQGYLFSRPLHAEQLMSWLRRQ 622


>gi|152990614|ref|YP_001356336.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422475|dbj|BAF69979.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 651

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 211/433 (48%), Gaps = 13/433 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            ++  A  D LTG+ NR     +L  ++       N+   ++ IDID +K IND  G  V
Sbjct: 224 KLIKRANFDLLTGLYNRSFLETKLRDLITK-----NIPFYLLFIDIDNFKTINDTKGHNV 278

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L +   RI  +L+  DI AR+ G+ F II+ + ++   I      +   +  PI L
Sbjct: 279 GDEILKNFANRIRNILRKDDIFARVGGDEFVIIIQNIDSPKIITKIVDKIFHKLQPPIVL 338

Query: 648 LERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
              +    ++ SIG   +     +  ++LKNA++AMY +K RG N    F          
Sbjct: 339 SPSKNMYHISISIGIVEFPKDGKSVEDILKNADIAMYRSKERGKNRFSFFNKQLADKVES 398

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           + +++ +L +A++  +  + Y P I     +++G EALI+W HP+ G ++   F+ +AEE
Sbjct: 399 KFILEHELKIAIQKDQFLIYYQPQIDARSNKLIGAEALIRWKHPQKGILTPYHFIPLAEE 458

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I+ I+  +   + +DI  W+++       I INI++     +        LI K   
Sbjct: 459 RNLIQQIDQIVFSHVVQDIKEWKERYGFSQ-KIAINISANHFAQSNFYYKFTNLIQKNGI 517

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             S I+L  +E+ +M N E +  +L +L   G S+++DDFGT  S L Y+   P D +K 
Sbjct: 518 DTSSIELEITETSIMQNLETTLRMLKKLHDHGFSISIDDFGTGYSSLFYIKKFPVDKIKI 577

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + +      +    I+ +I+ +AK +   IIA+ +  +  +  L  + C  IQ  +  
Sbjct: 578 DKTFIDDIVKNKDDRIIVHAIVEIAKGLGYKIIAEGVEDQEQLDILLDLDCHLIQGYYFD 637

Query: 942 SPLGFNSIL-KLL 953
            PL  +    K L
Sbjct: 638 KPLCKDDFEKKWL 650


>gi|332716296|ref|YP_004443762.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325062981|gb|ADY66671.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 644

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 220/436 (50%), Gaps = 12/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +     +  +A+ D LTG+PNR  F   L   L  S    N    ++++D+D +K +N
Sbjct: 214 ELQAKNVRLEHDAYHDALTGLPNRSLFRQELIERLRRS-FGGNGTTAILLLDLDGFKDVN 272

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L ++ +R+  +    D++ RL G+ F ++    N        A  + + 
Sbjct: 273 DTLGHDSGDALLQAVAQRLSGIGGDYDMVCRLGGDEFAVVSDDLN-EDTARRLASKLIEQ 331

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+    L E+E+ +   IG A  +   + + E+ K A+LA+Y AK  G      F+V   
Sbjct: 332 ISRTYQLGEQEVKIGTCIGIA-ISHGTVDADELFKRADLALYEAKAIGPGRASVFKVRMQ 390

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   ++   + DL  A++N E+ + Y P +     ++ G EAL++W HP  G++  S F+
Sbjct: 391 KQLTEKKSFEADLQTALQNDEMEVYYQPQVATQTRKLCGFEALLRWKHPVRGDVPPSVFI 450

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I ++  +++E   R+ + W        + + +N++        L + +   +
Sbjct: 451 PVAERTGLIHSLGKWVMETACREAMRW-----DEDMKVAVNLSPVQFHSTNLIQNVMGAL 505

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K+   PSR++L  +ES+++   +++   L RL+ +GI + +DDFGT  S L+ L  +PF
Sbjct: 506 DKSGLEPSRLELEITESILLNKSDQTINTLTRLKAVGIQIAMDDFGTGYSSLANLRGVPF 565

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   T  R   AI+  ++ + +++  T IA+ I  E   + + R+GCD +Q
Sbjct: 566 DKIKIDRSFLRDITSDRDALAIVEFVVGVGRSLRMTTIAEGIETEEQYELVKRLGCDLVQ 625

Query: 937 DSHVASPLGFNSILKL 952
              ++ PL    ++  
Sbjct: 626 GYLISRPLPAKELVAW 641


>gi|319764477|ref|YP_004128414.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|330826693|ref|YP_004389996.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|317119038|gb|ADV01527.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|329312065|gb|AEB86480.1| diguanylate cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
          Length = 986

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/961 (16%), Positives = 335/961 (34%), Gaps = 50/961 (5%)

Query: 12  EKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGI 71
              F +    L+  V       P     +   L       +  +        TA      
Sbjct: 19  LLIFALPCAMLVLSVLALQTWAPRYAHDAPLRLP----MHVLEDSDAQLTAETARTALEH 74

Query: 72  SRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVT 131
             ++ +  + +     W  F++          ++  P   LV         G R++ S+ 
Sbjct: 75  QPQVLLRDTHLAEAPFWFSFSVPPPGLDSPS-VVEFPSRHLVRLAC----WGGRQLDSLG 129

Query: 132 PSEGFSLDRIPNSDSDVFRI---TINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSF 188
            ++              F +    + PG  V    ++  P    +  W+    +    +F
Sbjct: 130 EADRVHQQGRLFDSQAGFGLRLQDLAPGMQVLCQAQLIGPGRLTVQQWDERALRTATRAF 189

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
               G++ G   LLA+F+ I  ++NR+S  +       + L   ++  G+  + +     
Sbjct: 190 ERNAGLLEGGIVLLALFVFITALINRNSTYVLFAVWLLINLRMGALSAGWDVQWLGHNVP 249

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK--------VGYITFSGIACIAILFCMS 300
              + +          ++ F+     +     K        +   + + +  +++    +
Sbjct: 250 VDWLIQGRPITLALLYVVTFVLFRSLFREELPKVGFQPLLNLTQWSCALMLVLSVALPYA 309

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            + P++    A  +L  +       +I H          +    +      +     +  
Sbjct: 310 QFLPLIWLFTAVGSLVLVFFLVRIVVITHSTVAAWYGASIGVTLLASGYEVVAAAFGLQT 369

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            + +     A +   +L  + I   + Q           +                 ++ 
Sbjct: 370 WIGSVNSVTAALSSSLLATMAIAAQMRQEHRQRVQAQTELEH-------TYNVIPLGLFT 422

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +   P +   LG     +     +W    H  D   ++ +L S          
Sbjct: 423 LDPQGHFIAANPALQAALG--PAVLVPGRDHWD---HYFDDTPWQRLLHSLNAQPVAEF- 476

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E R R  D Q       +   S + G I    G   D+TE+  + E +   A  D LT 
Sbjct: 477 -EVRGRTDDPQLSQGRRFLVKASRAGGRIE---GSLQDVTERALATERLQFLANHDPLTQ 532

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR      L   L  +    +    +  +D+D++K IND+ G + GD+VL  +  R+ 
Sbjct: 533 VLNRNGVQAELERALQPAGPGQDQALALAYLDLDRFKLINDMFGHSAGDEVLRQVCSRVD 592

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           E+L+    L R+ G+ F I++ + + +         +      P  + +    V  S+G 
Sbjct: 593 EVLQGGMHLGRVGGDEFVILMPNTHLANATLICQDIVNSLGNRPYRVGDLSFQVHGSVGL 652

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA------ 714
                   ++ + +  A+ A   AK + G+H+  F            + ++ LA      
Sbjct: 653 IEVVR-GSSAKDAVSTADRACREAKKKRGSHLVVF--ERDSCVFQEHEAEIRLAGLLSGS 709

Query: 715 VENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            E   LYL   PI+        +  E L++   P    + ++  +  AE    +  I+ +
Sbjct: 710 DEIEGLYLEMQPIMSLKEPHHSLNFEVLLRMRDPDGQEVPTTRLITAAENSGRMGVIDRW 769

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L +    +     +      FI +N++   L D    + +  ++ +      R+ L  +
Sbjct: 770 VLRQTLAWMREQHGKLKHTR-FICMNLSGASLNDERFVQDVVRMLEQYADVAPRLCLEIT 828

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           ESV + + E +R  + ++   G  + LDDFG   +  SYL  +  D +K +G  +     
Sbjct: 829 ESVALHDLENTRRFIAQVHGFGAKVALDDFGAGYTSFSYLKELRGDLLKIDGGFIVNMNE 888

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +AI+ +I+ +A+N+    IA+       ++ L  +G DY+Q   +A       +L+
Sbjct: 889 HPANVAIVEAIVGLARNLGMKTIAEWAEDSATVQTLAEIGVDYVQGFAIARSQPPERLLR 948

Query: 952 L 952
           +
Sbjct: 949 M 949


>gi|308051029|ref|YP_003914595.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ferrimonas
           balearica DSM 9799]
 gi|307633219|gb|ADN77521.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ferrimonas
           balearica DSM 9799]
          Length = 797

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 230/474 (48%), Gaps = 9/474 (1%)

Query: 490 NQFHWMIIRIRPMSN----SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
               W     R  +N        + R   + ++I E+++    +  +A  D LT +PNR 
Sbjct: 318 GVIRWRRAAERLTNNQQALEQAVLHRTQALEHEINERRRIESQLRHDALHDELTTLPNRS 377

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             + RL  +L + A D N    ++ +D++++K IND LG   GD +L  +  R+   ++ 
Sbjct: 378 MIMQRLHQVLSIKARDPNFHYALLFLDLNRFKVINDSLGHLTGDRLLAQVAHRLSGCVRG 437

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARL G+ F I+L   +        A  ++  +A P  +   EI    SIG A   S
Sbjct: 438 SDTVARLGGDEFAILLEHLSCDNDALQSAERIQAVLAKPFYIDGEEIYSGTSIGIAFGLS 497

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLV 723
              +  E+L++A++AMY AK         F  S       R+ ++ +L  A+E ++  + 
Sbjct: 498 QYQSPVELLRDADVAMYRAKQAHRAAPVVFDNSMREAAQHRMKLENELQRALELNQFEVH 557

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P+  L  E++VG EAL++W HP+ G +   EF+ + EE   I  ++ ++L +  +   
Sbjct: 558 YQPVWNLASEQLVGFEALVRWRHPERGLLLPGEFIELMEETHQILPLDRWVLNQACQQFA 617

Query: 784 SWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            W+ +      + + +N++S+     +  + +   + ++  S   + +  +E  ++  P+
Sbjct: 618 QWQRKYPRLARVGVSVNLSSEWFNRADSLDVVMQSLKQSGLSARSLLIEITERSLLHQPD 677

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILR 900
           ++  +L +LR++GI L +DDFGT  S LSYL  +P D VK + S ++   E +   A++ 
Sbjct: 678 QAASVLRQLRRLGIKLMMDDFGTGYSSLSYLHRLPLDVVKVDRSFISRLHEDQRAEAVIS 737

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +I+ +A  +   + A+ I     +  L +MGC Y Q   +  PL    +   L 
Sbjct: 738 AILNLASALGMKVNAEGIDNPKQVAMLKQMGCQYGQGYQLGRPLPAERVSDFLA 791


>gi|320155457|ref|YP_004187836.1| c-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
 gi|326423875|ref|NP_760602.2| C-di-GMP phosphodiesterase A-like protein [Vibrio vulnificus CMCP6]
 gi|319930769|gb|ADV85633.1| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           MO6-24/O]
 gi|319999248|gb|AAO10129.2| C-di-GMP phosphodiesterase A-related protein [Vibrio vulnificus
           CMCP6]
          Length = 679

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 128/563 (22%), Positives = 244/563 (43%), Gaps = 20/563 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457
            +     + S       D +   +     ++  P  A +LG  +   + G     L  + 
Sbjct: 125 SLEESETKFSRLTQLLPDGLLLVEEDT-ILSANPAAARLLGFNSQHDLLG---EELSRLF 180

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           ++++                        R    +   +      +  +   I+    +  
Sbjct: 181 MDEKSKMVFSHKLCSLLSEKAFVCMTSARCGFERRVQLHADFTTVLGNQSQII----LIQ 236

Query: 518 DITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           D  E  K        +   D+LT + NR  F  RL  ++            +  +DID +
Sbjct: 237 DADETPKHLSVKNSDDIHIDSLTKLYNRFGFTKRLEQLIK-----SQTPLLLFYLDIDNF 291

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  +GD V++ +  R+  LL    ++  L G+ FG+IL    N+      +  
Sbjct: 292 KNINDSLGHHIGDKVILEVAARLKRLLPQHSVIGHLGGDEFGVILPEPENNRMAELLSER 351

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   I  P +L      +  SIG   +      +  +L+NA+ AMY AK RG N +  F 
Sbjct: 352 IISLINQPFDLHHFSKRLACSIGSVRYPEDGQDARVLLQNADTAMYEAKDRGRNRLIKFN 411

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +++     R+ ++ +L  A++ + L + Y P +   D  I G EAL++W HP  G IS 
Sbjct: 412 DQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISP 471

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ +AE+  +I+ +   ++  +   +  W     + P  + IN++ +   + +L + M
Sbjct: 472 AAFIPVAEKAGLIEHLGRVVMRDVFNTVKRW-KLQGILPGRVAINLSPEQFGNPQLIDFM 530

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L+  T   P+ I    +ES VM + + +  +L  ++K+G SL++DDFGT  S L+YL 
Sbjct: 531 EKLLRTTELDPNCITFELTESAVMSDSDHTIQMLNAIKKLGFSLSIDDFGTGYSSLAYLA 590

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +       K++ ++ +II + K++  T++A+ +        L+ + C
Sbjct: 591 RFPIDELKIDRAFINDIDVLPKQVTVIENIINLGKSLNLTVVAEGVETHQQAALLSNLRC 650

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
             IQ  H   P   + I +L  +
Sbjct: 651 HSIQGFHFHRPQPKHEIEELFAQ 673


>gi|323492042|ref|ZP_08097207.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis
           LMG 20546]
 gi|323313771|gb|EGA66870.1| c-di-GMP phosphodiesterase A-related protein [Vibrio brasiliensis
           LMG 20546]
          Length = 683

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 226/443 (51%), Gaps = 9/443 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++ +   +   A+ D+LTG+ NR   L  L   +D + T +     +  +D+D++K IN
Sbjct: 230 DREAAEVKLNQLAYYDSLTGLANRSLLLQLLGKSIDDANTSNQA-GALFYLDLDRFKTIN 288

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD+++ ++++RI   LK     AR+ G+ F ++L +  ++ K  + A  +   
Sbjct: 289 DSLGHTIGDNLIKAISKRIEAWLKSDFTAARIGGDEFALLLPN-TSTEKAHELAQQLLAL 347

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P ++ + ++  T S+G A + S   T+ ++L+ A+ A+Y AK  G N    +     
Sbjct: 348 VSNPYSIDDHQLYCTVSVGIAVFPSVGSTNIDVLRQADTALYRAKVAGRNKYMFYEPEMQ 407

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + I++ L  A+   +L L Y P +      I+G+EALI+W+HP+ G +    FM
Sbjct: 408 AQVESFLEIEKGLHEALNKGQLELYYQPQVDDKHN-IIGVEALIRWNHPEKGVLPPGVFM 466

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINIASKDLLDNELCEGMQA 816
            IAEE   I  I  +++E+      SW+ Q  +P  F  + INI+      +   E +  
Sbjct: 467 PIAEETGQILQIGNWIIEQACYQYASWKKQDVLPDTFRRLAINISPLQFSQSSFVEHIVD 526

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++       I+L  +E++++ N + +   +  L++  +  ++DDFGT  S L YL ++
Sbjct: 527 SLTQAGIDGEHIELEITENLLLENVDAAIQKMKELKEHNLKTSIDDFGTGYSSLRYLKHL 586

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +T     E   AI+ +II  A+ ++  +IA+ +    +++ L ++GC  
Sbjct: 587 SVDVLKIDRSFVTQLHLDESDQAIVDTIIMTAQRLKLEVIAEGVEDAYELQALKQLGCAQ 646

Query: 935 IQDSHVASPLGFNSILKLLKERF 957
            Q      PL  + + +  ++ +
Sbjct: 647 FQGYLFDKPLPASELNERFEKNY 669


>gi|320108809|ref|YP_004184399.1| diguanylate cyclase/phosphodiesterase [Terriglobus saanensis
           SP1PR4]
 gi|319927330|gb|ADV84405.1| diguanylate cyclase/phosphodiesterase [Terriglobus saanensis
           SP1PR4]
          Length = 658

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 212/439 (48%), Gaps = 11/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +K+   +L  A  D+LTG+ NR+   +   T L  S  + +    V++ID+D+ K +N
Sbjct: 213 DYRKAQAELLFVAAHDSLTGVANRRHLEEAAKTALAWSRRNKSF-LAVLLIDVDRLKGVN 271

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD+VL  + RR+   ++  D   RL G+ F ++ +           A      
Sbjct: 272 DSFGHEAGDEVLREVARRLKSTVRAEDTAGRLGGDEFVVLQVGIAQPSGAISIADRFMNV 331

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +  P NL    ++ +ASIG A   +      ++L  AE A+Y AK+ G N V  F   + 
Sbjct: 332 LCEPYNLAGMLVSCSASIGVAIAPADADDWDQLLSCAEAALYKAKNSGRNTVCFFEAGMD 391

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   +R  ++  L  A+E +   L Y P+    D  +VG E L++W    W   S ++F+
Sbjct: 392 AKLRERRQLEVQLRHALEVNLFQLAYQPLFSFHDHHLVGFETLLRWP-AGWAPKSPADFI 450

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  +  ++LE   +   +W       P+ I +N++     + ++ E ++  +
Sbjct: 451 PIAEESQLIVPMGAWVLETACKTAAAWSK-----PLKIAVNLSPVQFRNGDIVEVVEQAL 505

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +   P+R++L  +ES+ + + + +   L RLR +GIS+ LDDFGT  S L+YL   PF
Sbjct: 506 KTSGLDPARLELEVTESLWLKDTDAALDQLVRLRALGISIALDDFGTGYSSLTYLLKFPF 565

Query: 879 DTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +       K  AI+++I+ M + +  TI A+ +      K +   GCD  Q
Sbjct: 566 DAIKIDRSFVIEMQLDPKASAIVKTIVAMGRTLGLTITAEGVETAAQAKAVHEAGCDQGQ 625

Query: 937 DSHVASPLGFNSILKLLKE 955
                 PL   +   L+  
Sbjct: 626 GYWFGRPLSLAAANTLVDA 644


>gi|330808279|ref|YP_004352741.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327376387|gb|AEA67737.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 819

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 123/626 (19%), Positives = 254/626 (40%), Gaps = 15/626 (2%)

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
           ++G++  +  I   +          +    R    ++        + +++L      + +
Sbjct: 171 IRGWKAQIFAINDSVTPAAKAFSDALGEGSRFILRLLLVTNFATALGLIVLALLRTHKLL 230

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PI 449
                F+  +  + ER  + +   GD V   D+        P    +    +    G P+
Sbjct: 231 AQRQVFANALQMEKERAQITLQSIGDGVITTDVEGAIAYMNPAAEAMTHWKAEHATGLPL 290

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                 +  N +    T+++  +  R  G  ++   ++  D     + +   P+ ++ G 
Sbjct: 291 AALFNLLDDNAQTEGLTLIEHILSGRLSGASEHSKLIQRLDGSTVSVTLVGAPIRHA-GK 349

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +   + + +D+T++++ +  +   A  D LTG+ NR+ F  RL   L         R  +
Sbjct: 350 VSGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHNLTRQVG-RHAL 408

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D++K +ND  G A GD++L  +   +   L+  D LARL G+ FGI+L +  +  
Sbjct: 409 MFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRENDTLARLGGDEFGILLENC-SPE 467

Query: 629 KIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                A  +R+++         R    T SIG      +  T    L+ A++A Y AK +
Sbjct: 468 AAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGLVHIAQTPTTLEASLRAADMACYMAKEK 527

Query: 688 GGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG--LEAL 741
           G N V+ +         R   +   + L +A+E +   L    I  L   E  G  +E L
Sbjct: 528 GRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEIAALGPGEHGGGHIEIL 587

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINI 800
           ++        I    F+  AE   ++ +++ +++E + + I    + +   P+ +  IN+
Sbjct: 588 LRLHDEAGRMILPDSFIPAAERYGLMTSLDRWVVENVFKIIRQCLNDSRQGPMAMCAINL 647

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   + D    + ++   +     P  I    +E+  + N   +   +  L+ +G   +L
Sbjct: 648 SGTTIGDQAFLDFLRKQFAAYSIPPEMICFEITETSAISNLGSAIRFINELKSLGCYFSL 707

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDF    S  +YL ++P D +K +GS +          A++  I  +   +    IA+ +
Sbjct: 708 DDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFV 767

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPL 944
                 + L  +G DY Q   +  P 
Sbjct: 768 ETAQIEQALLEIGVDYAQGYVIERPQ 793


>gi|56459429|ref|YP_154710.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178439|gb|AAV81161.1| Signaling protein with a periplasmic amino acid-binding domain,
           GGDEF and EAL domains [Idiomarina loihiensis L2TR]
          Length = 850

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/597 (20%), Positives = 255/597 (42%), Gaps = 17/597 (2%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           L   +    L+  LVL+ + +    +         +Q +     R +  +      ++  
Sbjct: 248 LTISVYVWWLMTALVLLFLTVVGFNLLLRRKVTEKTQALAESKYRLNTILDSVEAYIFIK 307

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D           +  +  L  G   G           +  D  +   +  +   +   Q 
Sbjct: 308 DKELKYQYANQQVLKLFQLKLGDFIGKTDA--DLFDKSTADTLKVFDNKVIKSGKRAAQE 365

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E        +         P+ ++N  ++   GI  DI+E +   E I   A+ D LTG+
Sbjct: 366 EISFLPDKKKPLHFWSVKVPLYDANKKVIGLCGICTDISEYQSMKEEIQSLAYFDPLTGL 425

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR+  L+RL         +      + ++DID++KK+ND +    GD++LV   +R+  
Sbjct: 426 ANRRFMLERLKDEFYRYQ-NGGDDGVLAMLDIDQFKKVNDSVSHDAGDELLVLFGQRLES 484

Query: 602 LLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            L   +   RL  + F ++L S++     +   +      + + ++ P  L E+  +++ 
Sbjct: 485 ELLQTETAGRLGADEFMVLLKSKSGINLLDDKNLRQRLQVLVERLSEPYQLGEKTESISV 544

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLA 714
           S+G   ++     + ++L+ A+LA+  AK    + ++ F     R  + R  +   L  A
Sbjct: 545 SMGVTLFS-DAQNTGDLLQGADLALSQAKETNASKLQFFNTGIQREFNYRQKMITGLRQA 603

Query: 715 VENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +    L +   P          +  +G EAL++W   + G +S +EF+ +AE   ++  +
Sbjct: 604 ITTESLEVYLQPQYQQLTDEASQRCLGFEALLRWYDEELGWVSPAEFIPLAESQGLMPDL 663

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  +L ++   I   +   +     + IN+++         E ++A ++        ++L
Sbjct: 664 HRLVLNQVLAAIPKLQHAISDKGGRVAINVSASQFKYPGFVEDIEARLTAAGIPGELLEL 723

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+++ + E +   + RL+++G++  LDDFGT  + L YL  +P +++K + S +  
Sbjct: 724 EVTESLLIDDIENTAANMERLKRLGVTFALDDFGTGYASLGYLKRLPLNSLKIDQSFVRD 783

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                   AI+R++I + K+++  IIA+ +  E  + +L  MGC   Q  + A P  
Sbjct: 784 MKNGNSDEAIVRTVIALGKSLDLAIIAEGVETEEHLHKLQEMGCFCFQGYYFARPEP 840


>gi|297624841|ref|YP_003706275.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297166021|gb|ADI15732.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
          Length = 658

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 125/450 (27%), Positives = 228/450 (50%), Gaps = 16/450 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP----TVMVIDIDKYKKIN 580
             + +   A+ D LTG+PNR +  + L  +L      +         ++ IDID +K +N
Sbjct: 202 HAQTMERLAYTDLLTGLPNRLALENELKRLLFADDPLEPHPLPDKLALLFIDIDGFKLVN 261

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G   GD +LV + +R+    +  D+LAR+SG+ + ++L +     +    A A++ +
Sbjct: 262 DTMGHEAGDTLLVLIAQRLRTYSRQGDLLARMSGDEYVLVLHNVRCGDEAVRVAEALKLA 321

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +  + ++V+ASIG + +    +  + +L++A+ AMYH KH G N V+ +  S  
Sbjct: 322 LDEPFFIEGQVVSVSASIGVSVYPEDALDPAGLLRHADSAMYHVKHAGKNGVKRYHASVD 381

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +   ++ DL  A+   EL+L Y P+  L   +++  EAL++W HP  G IS +EF+
Sbjct: 382 AALEEHKRLERDLRGALGRGELHLCYQPMFHLGSGQLLKAEALLRWRHPTRGWISPAEFV 441

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    I  +  ++L+       +W+      P+ + IN++          E + A +
Sbjct: 442 PLAEANGFILTLGEWVLQAAMAQARAWQ--GGQWPVRLSINVSPLQFAQPNFKETVLAAL 499

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
               ++P  ++L  +ES+VM NPE  R  L  LR  GI++ +DDFGT  S LSYL     
Sbjct: 500 RDAQFAPQLLELELTESIVMRNPEIVRRNLQELRNEGITVAIDDFGTGYSSLSYLRDFDI 559

Query: 879 DTVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           +T+K + S +   +  R       A++ +I+ +A +++  ++A+ I      + +  +GC
Sbjct: 560 NTIKIDRSFVRDLSTPRHAPQYALALVEAIVKLAGSLDVELVAEGIESREQFELVRSLGC 619

Query: 933 DYIQDSHVASPLGFNSILKLL--KERFPLV 960
           D  Q    A PL  +   +LL  + R P+ 
Sbjct: 620 DVGQGYFFARPLSASEFARLLGREPRQPVT 649


>gi|307150963|ref|YP_003886347.1| GAF sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306981191|gb|ADN13072.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece
           sp. PCC 7822]
          Length = 1297

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/512 (25%), Positives = 244/512 (47%), Gaps = 17/512 (3%)

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA----ND 518
                 ++    R      + R +     F       R + +  G+ L+   I       
Sbjct: 357 RQEREWETLWAGRENP---DQRNQMPRQSFVAWCEIQRGVPDWTGEQLKLAEILGLHLYM 413

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  Q++    I   A  D +T +PN   F  RL   L  + T  +    V++ID++++K+
Sbjct: 414 ILTQQRLTHLIHHQASYDPITQLPNWIIFNHRLALALVDA-THGSNMLGVLIIDLNQFKR 472

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDIL----ARLSGNRFGIILISENNSLKIADFA 634
           IND LG  VGD +L   + R+   L+    L    AR  G  F ++L       +  +F+
Sbjct: 473 INDSLGHGVGDYLLQKASDRLQNCLESYSFLEPLLARWHGAGFIVLLSQLAYVDEAINFS 532

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P  +  + I +  SIG A       +S  +LKNAE AMY AK +G N  + 
Sbjct: 533 QKLLNDFQEPFYVQSQAIYLGVSIGIALAPYDGDSSEVLLKNAESAMYQAKQQGKNTYQL 592

Query: 695 FRV-SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           +R  S+   ++++++ DL  A+E +E  L Y P I L   +++G+EALI+W HP  G +S
Sbjct: 593 YRPGSNQDFNKLILEADLRKAIERNEFVLHYQPQIELATGKLIGVEALIRWQHPCLGMVS 652

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ +AEE  +I  I  + L+        W+     P I + +N+++  L   ++   
Sbjct: 653 PALFIPLAEETGLICPIGEWALKTACHQYQIWQQAGL-PKIQMAVNLSAFQLQQYDIVAR 711

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +I +T  +P  ++L  +E+ V+ N ER   ++ +L+++GI + +DDFGT  S L+ L
Sbjct: 712 IAKIIQETRINPRDLELEITETTVIQNLERMTSIIEQLKQMGIKIAIDDFGTGYSSLNVL 771

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            ++P +T+K + S +           + ++II + K  +  ++A+ +     ++ L   G
Sbjct: 772 KHLPVNTLKIDKSFVQDLSNDPNDAKLCQAIIMLGKAFKLEVLAEGVETIKQLEFLKNCG 831

Query: 932 CDYIQDSHVASPLGFNSIL-KLLKERFPLVKN 962
           CD+ Q   ++ P+  +++L  LL  +     +
Sbjct: 832 CDHAQGFLISRPVPPDALLGSLLHAQLCGTSS 863



 Score =  114 bits (286), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 6/173 (3%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            + + +   +   +  D LT + NR  F   L           +   ++++ D+D +K  N
Sbjct: 1120 QLQNANLELKKLSAIDGLTQVANRHRFDVYLEQEWRRLMRSRH-SLSLILSDVDHFKWYN 1178

Query: 581  DVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            D  G   GD  L  + R I   + +  D++AR  G  F I+L  E +       A  +R+
Sbjct: 1179 DTYGHLAGDHCLQQIARVIKTSVGRPADLVARYGGEEFAIVLP-ETSLKGALFVAEQIRQ 1237

Query: 640  SIAMPINLLEREIT--VTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGG 689
             +        +     VT S+G A    S  ++   ++  A+ A+Y AK  G 
Sbjct: 1238 KVKNLTIPHTKSAYQCVTLSLGVASLIPSGALSPKALINAADEALYQAKANGR 1290


>gi|332187498|ref|ZP_08389235.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012427|gb|EGI54495.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 759

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 137/710 (19%), Positives = 280/710 (39%), Gaps = 42/710 (5%)

Query: 254 RACSEIALSSSLIIFLFMYL-HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312
           R      +   L+      L    R   K+     +G     +               + 
Sbjct: 55  RTALSAVVGILLVGLPIAALARVERRSRKLALAVTAGFGIWCMHAVGLSALMDCGHQFST 114

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI--IQPA 370
           +T     L  T  +I   ++       L  +   +       ++++   +      I   
Sbjct: 115 MTNLIGGLIGTAILINWQIRRSSNFPRLATSISFVGAVCAIHFISLAGDVVTAPLAIVHG 174

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV----LGSGDIVWDWDIVRD 426
                 L+     F V+   L     +       ER++  +        D +   D    
Sbjct: 175 SAMSPGLVAACTAFAVLIACLGGVLSASQARLRREREAQTLKAVIESMSDGLVFIDKAGR 234

Query: 427 RVTTTPDIATILGLASGSMHG--PIRNWLPYI------HINDRDNFRTILDSFVGYRRGR 478
                    T+      ++     I  +L  I      H + R      +     +    
Sbjct: 235 LRQYNRRFLTLFDTPPEALRTGVTIDTFLDTIARYRNWHPDKRTLVGQSMK-AWVHAAES 293

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              E  +   D + + M  R  P++         +   ND+T ++++   +  +A  D L
Sbjct: 294 FDRECEM--EDGRTYVMQCR--PVTEQ-----GVVLTFNDVTVERQASRKLSYHAHHDVL 344

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T + NR++  +R+  ++D + T      ++++ID+D++K++ND  G  +GD +L+     
Sbjct: 345 TNLGNRRALQERMAALIDKAKT-----FSLLLIDLDEFKEVNDTFGHGIGDKLLIHCAEV 399

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  L+     +AR+ G+   I++       +   FA  +   ++  + +    +    SI
Sbjct: 400 LHGLVGPDSFVARMGGDEMAIVMALP--IGQATTFAQTVVTQMSNAVTIDGYRLLPGCSI 457

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVE 716
           G A W  + ++  E+++ A+LA+Y AK  G      +  +   +   R  I + L  AV+
Sbjct: 458 GVAEW-EAGLSGEELMRRADLALYDAKRAGRRRAHRYEHAMTEALLKRQEIVDGLHDAVK 516

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
                L + PI  L      G EAL++W HP  G IS   F+ IAE+  +I  I  +++ 
Sbjct: 517 GGGFRLAFQPIADLASGITCGYEALLRWQHPVRGWISPDVFIPIAEDAGLIDEIGRWVIA 576

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  W      P +++ +N+++  L  + L + +   +     +  R+++  +E+ 
Sbjct: 577 EACRHLAGW-----SPHLYVAVNVSAAQLASDALLDHLAQAVIANGLAAERLEIEITETA 631

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEK 894
           ++ +P +    L R+ K+G  + LDDFGT  S LS+L  + FD +K + S +    S  +
Sbjct: 632 LIRDPVKVAGRLERICKLGFKIALDDFGTGQSSLSHLRDLCFDRIKIDRSFVLRAASDPR 691

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +A+LR+ + +   +     A+ +     +     +GCD +Q  H+  PL
Sbjct: 692 SMAVLRATVALGHELGVIAHAEGVETSDQLALCREIGCDAVQGYHIGRPL 741


>gi|116051327|ref|YP_789841.1| hypothetical protein PA14_21190 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586548|gb|ABJ12563.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 785

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 284/696 (40%), Gaps = 57/696 (8%)

Query: 279 HAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
           H +      +      I    F     +    A    + +  + L       Y  M    
Sbjct: 115 HPRRWQWVGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLAMYMTA 174

Query: 336 RAVLLIPAWILIF--IWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           R    +   +L    I      M  T       +        L  + +LI        LA
Sbjct: 175 RPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALA 234

Query: 393 TGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              + +G  S   R      SL + G+                        G+A+  +  
Sbjct: 235 AVPYLRGRRSARYRYMKLIASLLLAGAI-----------------AAMHFTGMAALVLSV 277

Query: 448 PIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           P    L      D         +L S +                     W     +    
Sbjct: 278 PAGTPLELQASADSLRLGWLTGVLASAIAACG----------------IWAAWSEKQRER 321

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +  R   + N +     +   +   A  D+LTG+ NR +F +     L+        
Sbjct: 322 RLSENSRVNALLNQLD---HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG 378

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +D+D +K+IND LG   GD++L  ++ RI  +L+  D++AR +G+ F  +L   
Sbjct: 379 -LAVMFLDLDHFKRINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEF-CVLADL 436

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    +  + + +  PI L  R + +TAS+G + + +      E+LKNA LA++ +
Sbjct: 437 TQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQS 496

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N+ + F        +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL+
Sbjct: 497 KACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALV 556

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +    F+ +AE   MI  ++ ++L R  RD+ S    A    + + +N  +
Sbjct: 557 RWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCA 615

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +L    L + ++  + +   +   ++L  +E  +M N +++  LL RLR++G+SL++DD
Sbjct: 616 SNLGRASLVDEVRHALDQAGLAARFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDD 675

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +     +++ + I ++II MA+ +   ++A+ +  
Sbjct: 676 FGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVET 735

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L    C+ +Q    + PL   ++ + L+  
Sbjct: 736 PQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAY 771


>gi|222528470|ref|YP_002572352.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455317|gb|ACM59579.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 549

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 210/436 (48%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LT +PNR  F+  L   +  +      +  +M IDID + KIN+ L
Sbjct: 115 KNQEKIKELAYFDQLTNLPNRNHFMLALEKAIRDA-HFKGQQLALMCIDIDNFSKINNTL 173

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL  + +R+ E +     +ARL+G+ FGII+ +  +   +  F   +    + 
Sbjct: 174 GHATGDVVLKEIAQRLKEAVGNNGFVARLTGDEFGIIIYNFLDFNVLNYFIYKIFNLFST 233

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              ++E    +T S+G A + S    S  +LKNA+ A+  AK +G N    + +      
Sbjct: 234 SWEIMEYNFNITPSMGIAIYPSDGQDSISLLKNADKALNLAKEKGKNTFCFYNLEMDNIL 293

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   DL  A+E  +  L Y PI+ L   ++ G E LI+W HP+ G IS   F+ IA
Sbjct: 294 QQRLEFESDLRKAIEKDQFVLYYQPIVDLEKMQLCGAEGLIRWIHPQKGLISPMSFIPIA 353

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L ++  D+ S R+       +I  N + ++       + +   I   
Sbjct: 354 EQTGLISQIGQWVLTKVITDLKSIREVT-NHNFYISFNASLREFSSANFVDNVLYTIEAL 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + +  +ESV M +P+ +   L   ++ GI + LDDFGT  S L+YL  +P D V
Sbjct: 413 KGDPTSLGIEITESVAMADPQNTIKSLNTFKEKGIKVFLDDFGTGYSSLNYLKQLPIDVV 472

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   +       I +S+I ++  ++  ++A+ I      + L    CD+ Q   
Sbjct: 473 KIDRSFIANMSTDIKEQKIAKSLINLSHILDLKVVAEGIENSQQAEILKSFECDFGQGYL 532

Query: 940 VASPLGFNSILKLLKE 955
              PL  +  ++  K 
Sbjct: 533 FGKPLPKDQFIEFAKR 548


>gi|307544839|ref|YP_003897318.1| sensory box/GGDEF family protein [Halomonas elongata DSM 2581]
 gi|307216863|emb|CBV42133.1| sensory box/GGDEF family protein [Halomonas elongata DSM 2581]
          Length = 609

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 242/561 (43%), Gaps = 10/561 (1%)

Query: 401 FSDGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
               +R    +       V  +D  R  +       T+ G  +    G +   L  I   
Sbjct: 44  QESEQRFRALLESLPKVAVQGYDRDRRVIYWNEASTTLYGYTADEASGRLLEDL-IIPDE 102

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            R+       ++V   +     E  +     +   +      M   + D      +  D+
Sbjct: 103 MREGMIEAHRAWVEEGKEIPAEEIELEHHSGERVPVFSH-HVMLGEHTDSPLMFCVDVDL 161

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++QK++   +      D LT +PNR +F   L   L+      +    ++ +D+D++ +I
Sbjct: 162 SDQKRAHRDLAFVTHFDTLTHLPNRNAFETELEGALESCLRR-HAGLALIYLDVDRFSEI 220

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +LV L RR+G+  +  D+++R+S + F +     N    +      +++
Sbjct: 221 NDALGYEQGDRLLVELARRLGQEQRLTDLISRVSTDEFVLAFPGVNQREDVHRLIGKVQQ 280

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P  +   E  ++A++G + +  + +++ E+++NA++A   AK  G   ++ F+   
Sbjct: 281 ALRRPFAVANGERRISAALGVSLFPENGLSARELIRNADVAKNRAKLDGPGGLQFFQQHH 340

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-HPKWGNISSSE 756
                    + E L  A+E+ EL L Y P + +    I  LEAL++W        +S  E
Sbjct: 341 HDELIREQRMVEQLERAIEHRELSLHYQPQVSVASGRIENLEALLRWQPRDSSAFVSPGE 400

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  +  +++E   R   +WR         + IN++ + +L ++     +A
Sbjct: 401 FIPLAERSGLIHRLGDWVMEEACRQQAAWRRAGFTES-RVDINLSGRQMLRSDTLARFEA 459

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++   +P  + +  +E+V++    +    L RL   G+ + +DDFGT  S LSYL + 
Sbjct: 460 CLARHGLTPRDVGIELTENVLIEAEPQVLEDLRRLYHRGVRIAIDDFGTGYSSLSYLKHF 519

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + + M  +    +  AI+   I +   +   ++A+ +     +  +  M CD 
Sbjct: 520 PVTALKVDRTFMRDAARQPEDRAIMEGAIFIGHRLGLEVVAEGVESAEQLDLIREMHCDL 579

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q      P+    I  LL +
Sbjct: 580 AQGYFFYHPMPAPDIQVLLSD 600


>gi|310826652|ref|YP_003959009.1| GGDEF domain-containing protein [Eubacterium limosum KIST612]
 gi|308738386|gb|ADO36046.1| GGDEF domain-containing protein [Eubacterium limosum KIST612]
          Length = 707

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/607 (21%), Positives = 247/607 (40%), Gaps = 24/607 (3%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS------QGIFSDGERQSLAVLGSG 415
             +  + PA+ GG    ++L     I +              Q    D ER  L +  + 
Sbjct: 110 WASLTVFPAVSGGGEDEILLCFIMDIGYKKQLEDIEKENESLQKKQMDDERYRLVIEQTN 169

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVG 473
            +V++W I   +    P  + I  + S         WL    +H  D D  +  + S   
Sbjct: 170 TLVFEWIIGTSQRYYAPKFSEIF-MGSYDGRDIKEIWLDDEVVHPKDIDVLKQKM-SMEA 227

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              G+++ E R+   + ++ W  +    + N +G I R +G  N+I E K+  E +   A
Sbjct: 228 ISNGQVEMEIRLCNKEGRYIWCKVVFNVLYNEDGSIKRVVGTLNNIDESKRVHETLKYRA 287

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTGI N  +F  +   ++         +  V+ +D++++K IND+ G   G+ +L 
Sbjct: 288 EFDLLTGIYNINTFYAQAERLV---REHPCQKFAVVRLDVNRFKFINDLYGREEGNRLLR 344

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   I   +   D   R++ + F  + +S  +   +      + K I            
Sbjct: 345 FMATVISANMGTMDAFGRMNSDVF-CLCMSYASGDPLLVRIKKILKEINQF----SESYQ 399

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDL 711
           V  S G        I  S +   A LA    K         +             I+ ++
Sbjct: 400 VMPSCGICIVKDRDIQMSILCDWANLAQKTIKGSLIKQWAFYDKKLRAKQLDERRIENEM 459

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   +  +   P   + +  ++G EAL++WDHP+ G ++   F+ + E    I  ++
Sbjct: 460 DEALNKRQFKVYLQPKHNVQNGSVIGAEALVRWDHPERGFLTPDRFIPLFERNGFIIKLD 519

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E   R I SW D+  M  + + +N++   + +    + +  +I +       +++ 
Sbjct: 520 EYVWEETCRIIKSWLDR-GMVAVPVSVNVSRVQVYNPNFYKKLLNIIRRYDIPKKFLEVE 578

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + N       + RLR+ GI+ ++DDFG+  S L+ L  +P +T+K +      S
Sbjct: 579 LTESSFVENTVDLYRGMERLREEGIAFSMDDFGSGYSSLNMLKNVPVNTIKLDREFFNES 638

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             T+K   I+   I M  +++  +IA+ +        L   GC   Q  + + P+  +  
Sbjct: 639 VATQKGKTIIEHTIGMINDLKLQVIAEGVETNEQAAFLNDCGCLAAQGYYYSRPMPVDEF 698

Query: 950 LK-LLKE 955
            K  LKE
Sbjct: 699 EKQFLKE 705



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 395 YFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIR 450
              + +  + E+    +A+    D +++ ++ R+R      +            +   + 
Sbjct: 1   MAEEKMNKNIEKNIYDVALRNIYDELYELNVTRNRYRIIYHVENKYVTPPEEGILSEAVA 60

Query: 451 NWLPY-IHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +   + IH  D   F    D     + +   +G +  EFR    D  FHW  + + P  +
Sbjct: 61  DVAEHMIHPEDSKRFLEFFDLDKVYATLESGKGSVIGEFRKLWVDGDFHWASLTVFPAVS 120

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
             G+    +    DI  +K+  +
Sbjct: 121 GGGEDEILLCFIMDIGYKKQLED 143


>gi|254501701|ref|ZP_05113852.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437772|gb|EEE44451.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 757

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 145/693 (20%), Positives = 277/693 (39%), Gaps = 40/693 (5%)

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW--- 344
                I           +  A+         +      +IY       RA+     W   
Sbjct: 72  LMAGYIGGPISGLITMAIGAAARYSEGGTMALGGALSLVIYGSAGLAARALFKTLTWPLL 131

Query: 345 ------------------ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
                                    +   +A+ ++    ++    + G+  + +LI    
Sbjct: 132 SARALFALAAAGTIATLPAFFVDKGLAFGLAVLQQAGFMLVI-GNMVGVPTLGLLIRVFQ 190

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             +  +         +      LA+      +W++D      T     A ++G       
Sbjct: 191 KSYEKSRRARDDAFIT-----RLAMKAGRAGIWEYDPRTKTFTLDEIGAALMGADEARKG 245

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               +    +   D+   ++ L             + R         W+  +    +  +
Sbjct: 246 IAFDDLTAQLDQKDQKKLQSALQGAC-MSPTPFSVDLRTTDKLGLPVWLRFQGSCANPGD 304

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            D  +++GI  DIT + ++ + I   A+ D+LTG+ NR  F   L               
Sbjct: 305 PDETKHLGILQDITSEVQTRQQIKKAAWTDHLTGLANRMVFDTLLEKNCTQDPRA-RPFN 363

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++V+D+D +K IND  G A GD VL  +   + E  +  D   R+ G+ F  +  S   
Sbjct: 364 ALLVLDVDNFKLINDNFGHAAGDAVLKRVAATLHEKAQPGDTPIRIGGDEFAFLC-SCPT 422

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +  +   A  +  +IA P  +    I +  SIG    T+ + +++E +  A+ A+Y AK 
Sbjct: 423 AQSLKQRAETIADAIAKPHQINGLYIPLDVSIGAIQITADQTSATETVLFADAALYAAKE 482

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G  V  F     +       I+  L  A  ++   L Y P++++ +    G EAL++W
Sbjct: 483 TQGTMVSVFDQDIEKKFVRRKRIENKLLQADFDTTFSLNYQPVVQMPEGRATGYEALLRW 542

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P   N+S +EF+ IAE L +I+ I  ++L+   ++ ++W  +     + + +N++   
Sbjct: 543 KCPDGTNVSPAEFIPIAESLGLIREIGAWVLKTAIKEALTWPGE-----LRVAVNVSPHQ 597

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +    L   ++ L+ ++ +   R++L F+E+V M +   +   L R+R +GI L LDDFG
Sbjct: 598 IGTGHLASYVEMLLRESAFPAERLELEFTETVFMRSDHSTLEELARIRAMGIRLVLDDFG 657

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S LSYL    FD +K + S +T       R AI+ S++ +A  ++  ++A+ +    
Sbjct: 658 IGYSSLSYLDKFSFDKMKLDRSFVTDVTLNPTRAAIVASVVDLAARLDIDLVAEGVETLK 717

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           D+  LT  G    Q  + A P+    +  LLK+
Sbjct: 718 DLHFLTGTGVKLGQGFYFARPMPAADLP-LLKQ 749


>gi|119946285|ref|YP_943965.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Psychromonas ingrahamii 37]
 gi|119864889|gb|ABM04366.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Psychromonas ingrahamii 37]
          Length = 1016

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 143/562 (25%), Positives = 262/562 (46%), Gaps = 12/562 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            S  +R+S  +  S D +   D+    +   P      G +   +       L  +  +  
Sbjct: 454  SSEKRKSAILDSSMDSIVSIDLEGAIIEFNPAAERTFGYSKSMVINKNFIDLFILESDQA 513

Query: 462  DNFRTILDSFVGYRRGRLQYEFR----VRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              ++ +   F+  +   L  + R    +           I I   S  +     +     
Sbjct: 514  AVWKNLAYKFLSAQG--LVRDHRNSLTLNRHLQSEFPAEITITGASFGSEIQNEFTLHIR 571

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            D+T Q K    +   A+ D LTG+ NR   +D LTT ++ SA D +    +  +D+D++K
Sbjct: 572  DVTRQLKLQGKLKLLAYSDPLTGLYNRTYLMDSLTTAINRSA-DSDRDVVMFFLDLDRFK 630

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            KIND LG   GD++L  +  R+  + +  DI+AR  G+ F I+     N   +   A  +
Sbjct: 631  KINDTLGHKAGDELLCEVATRLISVTRNTDIIARWGGDEFVILFTEAVNQAFVDSKATEI 690

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
             K +  P+ L  R I++  SIG A+      T+ ++++ A+LAMY AK  G ++ + F+ 
Sbjct: 691  LKVMRQPLALEGRVISIPTSIGIATVQPGITTAEQLVQQADLAMYSAKQGGRDNYQIFKA 750

Query: 697  -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +    +     ++D+   +   + + + +      D ++VGLEAL++W HP+ G IS +
Sbjct: 751  EMGHQAARDFDHEQDMRKGIAAKDQFFMVYQPKVTADNQLVGLEALMRWQHPQEGLISPA 810

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            +F+ +AEE  +I  ++ F +  +   I  W D      + + INI  K L+   L   + 
Sbjct: 811  DFIPLAEESNLIIELSEFAILTVLEQIRRWLDS-GYEDVTVAINITGKHLVSGTLVPYIS 869

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             L+++     + I++  +E V++ + +R   ++  L+ +GI +++DDFGT  S LSYL  
Sbjct: 870  ELLTRFDIEGTAIEIEITEGVLLTDVDRCIEVMSDLKSLGIKISIDDFGTGYSSLSYLKR 929

Query: 876  IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K + S +     + +   I  +II +A N+E T +A+ +  +  +  L   GCD
Sbjct: 930  LPIDVLKIDKSFVDDCAISLEDGEICATIINLAINLELTTVAEGVETQEQLDFLVAHGCD 989

Query: 934  YIQDSHVASPLGFNSILKLLKE 955
              Q      P     I KLL+ 
Sbjct: 990  TYQGYFFHKPNSAQVIEKLLQR 1011


>gi|126660571|ref|ZP_01731676.1| hypothetical protein CY0110_22914 [Cyanothece sp. CCY0110]
 gi|126618164|gb|EAZ88928.1| hypothetical protein CY0110_22914 [Cyanothece sp. CCY0110]
          Length = 855

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 129/567 (22%), Positives = 248/567 (43%), Gaps = 13/567 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNW 452
                 + +  +R       S + +   +      + T      +LG +S  + G     
Sbjct: 277 RKRESKLTAGKDRYRFFFEQSTEGILVINPDTKHIIETNQAYCKLLGYSSAEIIGCNLYQ 336

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L  +   +RD F   L          ++  F  R  +     +  +I   S    ++L  
Sbjct: 337 LLEV---ERDTFNEELGKITSENPYLIKESFH-RHQNGSLLAVAGQISLTSYQGQEVLCL 392

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DI E+K++ E +      D LT +PNR+ F  +L   L  +   ++L   V+ ID
Sbjct: 393 I--IRDIRERKQAEEELQYQLLHDPLTNLPNRELFKQQLGVALAHAQRHEHL-LAVIFID 449

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +  IN+ LG ++GD VL S   R+   ++  D + R   + F ++L    N+     
Sbjct: 450 IDSFTHINNTLGHSLGDKVLQSFGERLSSCIRAGDTVTRWGSDEFVLLLPQIKNTEDTVK 509

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++  P    +  + +  SIG A +      +  +LKNA+ A+Y  K +G NH 
Sbjct: 510 LAQRIFDTLQRPFIFDDHRLQIKCSIGIAIYPQDGDNAEGLLKNADTALYRTKEQGKNHY 569

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +     +     + ++  L  A+E  +  L Y P ++    +IVG+EAL++W+ P +G
Sbjct: 570 QFYSPHLTAEAELLLRLESLLHQALEKKQFSLQYQPQLQYKTGKIVGMEALLRWETPAYG 629

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ +A +  +I  ++ ++L+      +SW+     PPI + +N+++K+     L
Sbjct: 630 MIMPQKFLPLAAKTNLILHLSKWVLKTACEQNLSWQKDGL-PPIPVTVNLSAKEFQQPHL 688

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + +++ +T   P  ++L  +E  +  N   +R  L  L+ +G+ + LDDFG   S L
Sbjct: 689 ATVVASILDETGLDPQWLELELTELTLRQNLNLARKTLQDLQNLGVRIALDDFGRGFSSL 748

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL    F T+K +  L+           ++ +++ + K     ++A+ +     +  L 
Sbjct: 749 GYLKQFSFRTLKLHQDLIRDLRGTSEELGLISAVLAIGKGFNMRVVAEGVETSEQLNILQ 808

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
            + C  IQ    + PL       LL +
Sbjct: 809 NLDCTEIQGYWFSRPLPTKEATALLSK 835


>gi|15891442|ref|NP_357114.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15159848|gb|AAK89899.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 644

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 218/436 (50%), Gaps = 12/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +     +  +A+ D LTG+PNR  F   L   L  S         ++++D+D +K +N
Sbjct: 214 ELQAKNVRLEHDAYHDALTGLPNRSLFRQELIERLRRS-FGGTGTTAILLLDLDGFKDVN 272

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L ++ +R+  +    D++ RL G+ F ++    N        +  +   
Sbjct: 273 DTLGHDAGDALLQAVAQRLSAIGGDYDMVCRLGGDEFAVVSDDLN-EDAARRLSTKLIDQ 331

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+    L E+E+ +   IG A  +   + + E+ K A+LA+Y AK  G      F+V   
Sbjct: 332 ISRTYQLGEQEVKIGTCIGIA-ISHGAVDADELFKRADLALYEAKAIGPGRASVFKVRMQ 390

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   ++   + DL  A++N E+ + Y P +     ++ G EAL++W HP  G++  S F+
Sbjct: 391 KQLTEKKSFEADLQTALQNDEMEVYYQPQVATQTRKLCGFEALLRWKHPVRGDVPPSVFI 450

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I ++  +++E   R+ + W        + + +N++        L + +   +
Sbjct: 451 PVAERTGLIHSLGKWVMETACREAMGW-----DEDMKVAVNLSPVQFHSTNLIQNVMGAL 505

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K+   PSR++L  +ES+++   +++   L RL+ +GI + +DDFGT  S L+ L  +PF
Sbjct: 506 EKSGLEPSRLELEITESILLNKSDQTINTLSRLKAVGIKIAMDDFGTGYSSLANLRGVPF 565

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   T  R   AI+  ++ + +++  T IA+ I  E   + + R+GCD +Q
Sbjct: 566 DKIKIDRSFLRDITSDRDALAIVEFVVGVGRSLRMTTIAEGIETEEQYECVRRLGCDQVQ 625

Query: 937 DSHVASPLGFNSILKL 952
              ++ PL    ++  
Sbjct: 626 GYLISRPLPAKELVAW 641


>gi|28872128|ref|NP_794747.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855382|gb|AAO58442.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 719

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 243/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D   +     P I
Sbjct: 129 VLKPKVQTLLEQQRNRRALQQLSMELESARAFNASVLANVAEGILVVDEAGNISFANPAI 188

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R A      
Sbjct: 189 CQLLNASVDQLRGTQVLDY-VIEPQVSSWLESGFYQHYRKADTYRVHDAILRTAQGSQLP 247

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 248 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 304

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 305 LLRNERADKY-LVVLFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGG 363

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +IT+ AS+G A++         +L
Sbjct: 364 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVNGVDITLGASVGIATFPDCGSNLDGLL 423

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 424 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVGD 483

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W      P
Sbjct: 484 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQAWNGVFA-P 542

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E  ++ N   S   L  L 
Sbjct: 543 DVVLSVCVSPTQFCMPNLASELKRAMDRFGLKPGQIEVEITEGSLVHNLTHSHKQLKLLH 602

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +    E R   A+ RSII +++N++
Sbjct: 603 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVESRREAAMARSIIDLSRNLD 662

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 663 MLVIAEGVETIEQYQWLADNGCQVMQGFLIAHPMVAEEALHF 704


>gi|254507527|ref|ZP_05119661.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219549597|gb|EED26588.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 692

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 219/437 (50%), Gaps = 10/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K        +A  D+LTG+ NR  F  RL  ++      ++    ++ +DID +K IND 
Sbjct: 256 KLLSNAGQEDAHIDSLTGLYNRFGFTKRLEQLI-----QNDTPLIMLYLDIDNFKNINDS 310

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  +GD V+  ++ R+  LL    +L  L G+ FG+IL    N+      +  +   I 
Sbjct: 311 LGHHIGDKVIKEVSSRLKRLLPQQAVLGHLGGDEFGLILPEPENNRMAEMLSERIISLIN 370

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            P +L      +  SIG  ++      +  +L+NA+ AMY AK RG N +  F  +++  
Sbjct: 371 QPFDLHHFSKRLACSIGSVAYPGDGNDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKE 430

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ ++ +L  A++ + L + Y P +   D  I G EALI+W HP  G IS + F+ +
Sbjct: 431 ARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALIRWKHPVEGYISPAAFIPV 490

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I+ +   ++  +   +  W     + P  + IN++ +   + +L + M+ L+  
Sbjct: 491 AERAGLIEHLGRVVMRDVFSTVKRW-KLQGILPGRVAINLSPEQFGNPKLIDYMEKLLRT 549

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P+ I    +ES VM + + +  +L  ++K+G SL++DDFGT  S LSYL   P D 
Sbjct: 550 TELDPNCITFELTESAVMSDSDHTLQMLNAIKKLGFSLSIDDFGTGYSSLSYLARFPLDE 609

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +T      K++ ++ +II + K++  T++A+ +  +     L+ + C+ IQ  
Sbjct: 610 LKIDRAFITDIDTLPKQVTVIENIINLGKSLNLTVVAEGVETQQQATLLSNLNCNSIQGF 669

Query: 939 HVASPLGFNSILKLLKE 955
           H   P     + +L  +
Sbjct: 670 HFHRPQPKQEVEELFAQ 686


>gi|150377740|ref|YP_001314335.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150032287|gb|ABR64402.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 685

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/457 (28%), Positives = 232/457 (50%), Gaps = 14/457 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
                  D   +  S + +   A  D LTG+PNR SF DRL  +L  +      +  V+ 
Sbjct: 232 GMASYLIDTDVRAHSQQQLRYMAAHDALTGLPNRISFTDRLIEVLHEA-RGSGRKFAVIG 290

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID++++K+IND LG + GD+ L  ++RR+ + L   + +ARL G+ F  +        ++
Sbjct: 291 IDLNRFKEINDTLGHSAGDEALRIVSRRMAQSLDSDEFVARLGGDEFAAVKTCVT-KKEV 349

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           + FA  + +    PI +   E+TV AS+G A W        E++ NA+LAMYHAKH   +
Sbjct: 350 SAFADRLAEIFGRPIRVGNIEVTVGASMGAAIWPDDAEAPDELVNNADLAMYHAKHTFLD 409

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +          R  + E L  A+E  EL + Y     L   E+ G EAL++W HP+
Sbjct: 410 VPCFYDSGIGASVRKRRQLGEALRHALEQDELAIHYQVQKSLSTGEVQGYEALLRWTHPQ 469

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I  SEF+ IAEE  +++++ +++L R   D ++W       P  + +N+++   +D 
Sbjct: 470 LGPIPPSEFIPIAEENGLVRSLGVWVLRRACMDAVTW-----DKPCRVAVNVSAVQFMDA 524

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L   +  ++ +T   P R++L  +E+ ++ +  RS  ++G+++ +G+ L LDDFG+  S
Sbjct: 525 NLPRLVHEVLIETGLPPQRLELELTETALIKDKGRSLHIIGQIKALGVGLALDDFGSGYS 584

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L   PFD +K + + + G    R   AI+R+++ + K+++  ++A+ I  +  +  
Sbjct: 585 SLETLRSFPFDKIKLDRAFVDGIESDRQSKAIVRAVLALGKSLDIPVLAEGIETDEQMSV 644

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           L   GCD  Q   +  P     +    + R P   +T
Sbjct: 645 LRLEGCDEGQGYLLGRPSPIGDLA---QNRQPAQSDT 678


>gi|307153866|ref|YP_003889250.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306984094|gb|ADN15975.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 613

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 105/451 (23%), Positives = 213/451 (47%), Gaps = 18/451 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT----------- 567
           I + ++    +      D LT +PN+          +    +    + T           
Sbjct: 153 INKIQEIQNKLEFLLHHDPLTNLPNQLLLRKFFQEFISKQKSSQTAKDTQTPDNKNQSFI 212

Query: 568 -VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ I +D++++I++  G  + D +L  + +R+   +    I+ARLS + F IIL    +
Sbjct: 213 PILSIGLDRFERIHESFGYEISDILLKLVAQRLVSCVHKQGIIARLSEDEFVIILNPVVD 272

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               +  A  +  + + P  +  +E+ +T S+G   +        E+++ ++  M   K 
Sbjct: 273 KHFASQIAEHIINTFSHPFMIESQEVFITLSLGIVIYPRDSQKLQELIQKSKAIMKRVKQ 332

Query: 687 RGGNHVESFRVSSFRS---DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            GGN  E +     ++   D + ++ DL  A+E +E  + Y P +     +IVG EAL +
Sbjct: 333 MGGNSYEFYSRLIEKNVVSDYLDLETDLRHALERNEFEVYYQPKVSCETGKIVGAEALCR 392

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W++PK G +S   F+ IAEE+ +I+ +  ++L    +    W+ +    PI I +NI+++
Sbjct: 393 WNNPKRGMVSPGIFVPIAEEIGLIEPLGEWVLRTACKQAKDWQKKGLN-PIKIAVNISAR 451

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +  ++ +  ++   ++L  +ES+++ NP  S L L  L+ +G+ + +DDF
Sbjct: 452 QFNQKNLALWLSNILEEINFNGQLLELELTESMLLENPSISVLKLRGLKTLGVKIAIDDF 511

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   PFD +K +   +    +      I +++I +A ++   ++A+ +  +
Sbjct: 512 GTGYSSLSYLQQFPFDILKIDRCFVKNIDQNVKNAEITKALISLAHHLNLVVVAEGVETK 571

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++  L    CD IQ    + PL  +   +L
Sbjct: 572 PELSFLKTYNCDEIQGFLFSRPLPASEFERL 602


>gi|56551951|ref|YP_162790.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761962|ref|ZP_04760047.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543525|gb|AAV89679.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373642|gb|EER63214.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 579

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 132/446 (29%), Positives = 235/446 (52%), Gaps = 5/446 (1%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+ +  D T+  +    +     +D+LTG+PNR  F   L  ++ L          V+
Sbjct: 129 TCYLMVPVDNTQAVELQSTMRMKILRDSLTGLPNRIGFSRLLDDVILLEK--GTASVAVI 186

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+ ++ +IN+ +G  VGD++LVS+ RR+  +L+  D L R+ G++FGI+L   + +  
Sbjct: 187 AIDLIRFSRINESMGSVVGDELLVSVARRLTSVLRPGDRLGRIGGDQFGILLSLHHGTSD 246

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  ++  ++ P NL   ++ V  +IGF+        S ++L++A++A+  AK    
Sbjct: 247 VWHAARRIKALMSTPFNLANLKVKVNCAIGFSLMDDRIEVSEDLLRDAQIALKRAKETDH 306

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             V +   +S    R  ++ DL  A++N +L+LVY PI+   +++IVG EAL +W+H   
Sbjct: 307 VEVYNVGEASVLQKRFSLETDLRRAIDNGDLHLVYQPILSPYNKKIVGFEALARWNHETL 366

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDN 808
           G +S +EF+ +AEE  +I  +  + LE        W  QA    PI + +N+++  L+ +
Sbjct: 367 GPVSPAEFIPVAEESGLIVPLGRWALESSVHTQQQWDKQAGYTLPIRVSVNVSALQLMRD 426

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  +  +T  +  R+ L  +ES +M  PE+S  ++  + ++GI +++DDFGT  S
Sbjct: 427 NLTQLITDIKKQTGINGERLTLELTESALMRYPEQSISVINTMHELGIKISMDDFGTGYS 486

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   P D +K + S +T   E + AI   R+I  MA  +    I + I      K 
Sbjct: 487 SLSYLKTFPIDHLKIDRSFVTNLAEDKTAIAITRAITSMASTLSIKTIVEGIETPEQKKI 546

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           +  +GCDY Q  + + PL  +  +  
Sbjct: 547 IMDLGCDYAQGFYFSRPLPVDEAIAF 572


>gi|330811466|ref|YP_004355928.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379574|gb|AEA70924.1| Putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 763

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 136/533 (25%), Positives = 261/533 (48%), Gaps = 9/533 (1%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             + +I    G ++  +          IH +D++     +   +         EFR+R  
Sbjct: 212 YISHNITK-FGHSAAQLTNSPDWAQTLIHPDDQEKVHEAMVRVLDRDTAGASIEFRMRTG 270

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D+ + W+  R  P+ N  G +L   GI  DITE+K + E I   A  D LTG+ NR + +
Sbjct: 271 DDTYRWVENRYIPVRNEQGLLLEIEGIILDITERKLAEEKIALLARTDGLTGLANRATMI 330

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +RL      +A        +  +D+D +K+IND LG  +GD +L  + +RI    +  D+
Sbjct: 331 ERLHQA-FAAARRGAAPFAMFYLDLDHFKRINDTLGHPIGDLLLQEVAKRIKGCTRENDV 389

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F I+ +  + +   A  A  +R ++  P +L   ++ ++ SIG A +T   +
Sbjct: 390 VARLGGDEFAILQLDVHEATHCAALAGKIRDTLVAPYSLDGNDVRISVSIGIALYTPQSL 449

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
           ++  ++  +++A+Y +K +G N        ++   +DRV +  DL  A+EN+EL+L Y P
Sbjct: 450 SADSLMAQSDMALYRSKEKGRNQYHFHNEEINQEVTDRVALANDLRQAIENNELHLHYLP 509

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + L   +I+G+   ++W+HP+ G +  + FM  AE+  +I  +  ++L++  + +  WR
Sbjct: 510 EVDLGSGKILGMGVQVRWNHPQRGWLEPAVFMPAAEKTGIIIGLGHWVLDQACQQMRQWR 569

Query: 787 DQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           DQ   PP+ I I+++   L    EL   +    ++   +P  ++   +E+ +        
Sbjct: 570 DQGMAPPV-IAIDLSLTQLKTGPELIYDVLRTTARWELAPWDLRFDVTEATLAQTKWTHN 628

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSII 903
            +L RL ++G+ + +DDFGT+ S   YL     + +K     +    +  +    LR+II
Sbjct: 629 DVLPRLCELGVQIAIDDFGTEYSSFDYLKTYRVNHLKLAQRFLDSANADPENATTLRAII 688

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDY-IQDSHVASPLGFNSILKLLKE 955
             A+++   IIA+ +  +     L   G +   Q  + ++ +  +   +LLK 
Sbjct: 689 NFARDVGIGIIAEGVETQEQRTTLMSSGGEMQAQGHYFSTVVDSDQAAELLKA 741


>gi|70730230|ref|YP_259969.1| signaling repeat/GGDEF domain/EAL domain-containing protein
           [Pseudomonas fluorescens Pf-5]
 gi|68344529|gb|AAY92135.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 691

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 114/432 (26%), Positives = 212/432 (49%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LTG+PNR    DR+   +            +M ID+D +K +ND  
Sbjct: 254 EANKELTQLALHDTLTGLPNRILLADRIDQAMHRVTAHGGC-FALMFIDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L  + +R+ E L+  D LAR+ G+ F  +L+           A      ++ 
Sbjct: 313 GHHMGDQLLREVAQRLREDLRSEDTLARIGGDEFV-LLVQLAEPDDALRLAARQVGLVSR 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
              + E ++ ++ASIG A +  + +++ E+L NA+ AMYHAK  G N    F   ++S  
Sbjct: 372 SFRVAEHDLQISASIGIAVYPGNGLSAQELLMNADAAMYHAKGTGKNGYSFFDASMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ + +DL  A+E+ +  L Y P     +   VG EAL++W+HP+ G +   +F+ +A
Sbjct: 432 RRQLQLLQDLRNALEHHQFRLHYQPKFDAANGLPVGAEALLRWEHPQHGLLLPDKFIELA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I AI  ++L    R +  W  Q       I +N+++       L   +   + + 
Sbjct: 492 EKTGLIIAIGEWVLNEACRQMREWYVQ-GYTDWRIAVNLSALQFCHAGLVRSVANALERY 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+  M + + S L+L +L  +G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 HLPANNLTLEITETTAMSDADVSMLVLQQLADMGVDLSIDDFGTGYSSLMYLKRLPANEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +   +    LT++GCD +Q   
Sbjct: 611 KIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETGVQQTFLTQLGCDSLQGYF 670

Query: 940 VASPLGFNSILK 951
           +  PL     ++
Sbjct: 671 LGHPLPPEGFMQ 682


>gi|126659041|ref|ZP_01730182.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126619698|gb|EAZ90426.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 750

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 109/571 (19%), Positives = 223/571 (39%), Gaps = 16/571 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q +       Q +F + E   + +   GD V   +   + +   P    + G    +  G
Sbjct: 173 QDITERKEIEQALFCEKELAQVTLKSIGDGVITTNFSGEVLYLNPVAEKLTGWTVETAKG 232

Query: 448 PI-RNWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                    I+  + +   + +   +       +  +  + + D   + +     P+ N 
Sbjct: 233 KPVTAIFQTINELNEEPIESCVCQLLRQETSICVNDDILLISRDGSRYAIDESASPIYNH 292

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           N +++  + +  D+T+ ++    I   A  D LT + NR+SF ++L   +  + T  N  
Sbjct: 293 NQEMIGTVLVFRDVTKPRQLARKIAWQANHDGLTKLMNRRSFEEQLDRAILEARTHQNSH 352

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +  +D+D++K +ND  G   GD++L  L       ++  D +ARL G+ FGI+L    
Sbjct: 353 I-LCYLDLDQFKVVNDTCGHIAGDELLRQLAELFNHQVRTSDKIARLGGDEFGILLHQCP 411

Query: 626 NSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                   A  +RK I        ++   + ASIG        +  + +L  A+ A Y A
Sbjct: 412 -LQAGKQIADKLRKLIEDFRFTWDDKTFAIGASIGLVEINEDTLDLNSLLSAADAACYAA 470

Query: 685 KHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYH---PIIRLMDEEIVG 737
           K  G N +  ++        + +       + LA+E +   L      P+      +   
Sbjct: 471 KDNGRNRLHIYQADDHEVAKQREERQWISKIHLALEENRFCLYQQKIIPVNPSKKGQNNH 530

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E LI+    +   +    F+  AE   ++  ++ +++    +   +  +          
Sbjct: 531 NELLIRMIDREGKIVPPMAFIPAAERYDLMPVLDRWVVSHFFKYYSTLTNSQKQEIYT-- 588

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++   L   +    ++  + +   SP  +    +E+  + N  ++   +  L+KIG  
Sbjct: 589 INLSGSSLTSEQFLNFLKQQLKEHPISPETLCFEITETTAIANLSKAITFIRELKKIGCH 648

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
             LDDFG+  S   YL  +P D +K +GS +           ++  I  +   +    IA
Sbjct: 649 FALDDFGSGMSSFGYLKNLPIDYLKIDGSFIKDILKDPIDCEMVECINRVGHVMGIQTIA 708

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           + +     +++L +M  DY Q   +A P   
Sbjct: 709 EFVESNEILQKLQKMNIDYAQGYGIAKPCPL 739



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + S   +    +  S  +++             +  I    G          + W   I
Sbjct: 56  ALLSTKSQLHRLLSCSPVVIYSRQASDGFALTFISNSIQQ-FGYQPREFLKDRKFWSHCI 114

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D       L +           ++R+R  +  + W+  + + M +  G+    IG  
Sbjct: 115 HPEDILEVCAQLLNLFAEETQI--CQYRLRDHNGNYRWVQDQRKLMRDEMGNATEIIGSW 172

Query: 517 NDITEQKKSLE 527
            DITE+K+  +
Sbjct: 173 QDITERKEIEQ 183


>gi|294498251|ref|YP_003561951.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus megaterium QM B1551]
 gi|294348188|gb|ADE68517.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           megaterium QM B1551]
          Length = 922

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 149/794 (18%), Positives = 312/794 (39%), Gaps = 73/794 (9%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSM----LIPTFAMAWVVLGYISIDF---------GFLSK 241
            + +   +A   T  ++   S +    L     +    +  I+I            F   
Sbjct: 148 FLSILIAVAASNTALWLGFYSKLNEGKLTVFAKVICSTIMGIAIAGMHYTGMQAASFSGM 207

Query: 242 LVNLPSGELLIW-RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
            ++  S    +     S + +   + +F  ++L                    + L  + 
Sbjct: 208 SMSEHSNGFALNPIYLSVVIVFFIVCLFTAVFLTIFMDRRVQKQEVLKWAFFESALDAIL 267

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
                           ++       +I   +                             
Sbjct: 268 VIDEKRHVLSLNYAAETLFSLKASDVIGSNVVKLLPFYEF--------------SSLQDG 313

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTV-------IQHVLATGYFSQGIFSDGERQSLAVLG 413
           R ++ ++       + + V+ +G          I+++       + +     R       
Sbjct: 314 RTEHSLLISNREVTVEITVMAVGIEETVEYMLYIRNMTQEREAEKTLIEAKNRYENLFYS 373

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFV 472
           S   +       + V+    +  +LG+    + G  + ++     + D       +    
Sbjct: 374 SPLAI-MVHREEEVVSVNDAMIQLLGVTEDQLVGKSLYDFFSSEQVPDIKKGLKAVKDRK 432

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              R  L    ++  A  +  ++ ++   +   NG+ L +  +  D+TEQKK+ E +   
Sbjct: 433 DEPRSPLAQ-LKMFNALGKELFLEVKSTLIQ-INGETL-FQTVTRDVTEQKKAQESLQYM 489

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LT +PNR  F   +   +D +AT    +   + +D+D++K++ND LG   GD ++
Sbjct: 490 AFHDMLTDLPNRSMFSSIVEKSIDSAATSGK-KLHFLFLDLDRFKQVNDTLGHHAGDQLM 548

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           + +  R+   L+  D+L+R  G+ F ++L    +   +     ++   ++ P  +L R++
Sbjct: 549 LQVVDRMKSCLRNQDVLSRFGGDEFLVLLHDRTDEE-VKKICQSLNDCLSTPFVVLSRDV 607

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
            +  SIG + +         ++++A+LAMY  K +G NH   ++         R+ I++ 
Sbjct: 608 YLGVSIGVSLFPKDGKLLEVLVRHADLAMYEVKKQGRNHYLFYQKEMQVHTTRRMRIEDG 667

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A E  E+ L Y P + +    IVG+EALI+W H + G IS +EF+ IAEE  +I  +
Sbjct: 668 LRKAFELGEMELHYQPKVNIQSGHIVGVEALIRWTHAEMGVISPAEFIPIAEETGVIVTL 727

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L++       W+ Q   PP+ + +NI+S D    +  + +  ++ +       ++L
Sbjct: 728 TKWVLKKACHQNKYWQLQGL-PPLKMSVNISSVDFGTTDFVDYVLGVLREVELESRYLEL 786

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV M + E++   L  L+  G+ +++DDFG+  S  SY+  +P  T+K + S +  
Sbjct: 787 EITESVTMKHVEQTIEKLQILKDAGVFISIDDFGSGYSSFSYIQKLPIHTLKIDRSFIKD 846

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIK-------------ELTRMGCDYI 935
                   +I+R+II +AK++              +               L +  CD +
Sbjct: 847 LDPNTTEVSIVRAIITLAKSL-------------QLSVVAEGVEEVEQVELLHKEKCDEV 893

Query: 936 QDSHVASPLGFNSI 949
           Q  + + P+     
Sbjct: 894 QGYYFSKPISAEEF 907


>gi|89092313|ref|ZP_01165267.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89083401|gb|EAR62619.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 677

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 226/436 (51%), Gaps = 6/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E ++    +   A  D+LTG+ NR++FL  L  ++   +T+   R  V  ID+DK+K+I
Sbjct: 229 SELEQQKNSLRQIAEHDSLTGLANREAFLKSLNEVIIHCSTNKR-RAAVFFIDLDKFKQI 287

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G + GD VL+ +  R    L+  D LAR+ G+ F +I+     S   A+ A  +  
Sbjct: 288 NDSMGHSAGDAVLIEMAHRFTSTLRKSDSLARIGGDEFTVIIDPLYESKDAAELAKKLIA 347

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           S+  P    ++ + +  SIG A +     T  E++KNA+ AMY AK  GGN    +   +
Sbjct: 348 SLEEPYEYEDQTLYLNTSIGIAVYPEDGTTPQELMKNADSAMYQAKKAGGNTFHFYNRLM 407

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ ++ +L  A++  +L + Y P   L   ++VG+EAL +W HP+ G I    F
Sbjct: 408 NQDTLAKIQLESELRSAIQQDQLTVYYQPQFDLKTRKLVGVEALARWIHPEKGLIPPCTF 467

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  +   +L +  + +  W  +     I + +N+++K L   EL   +  +
Sbjct: 468 IPLAEEKGLIHQVGSIILTKACQQMAQWNGE-REAQIALAVNLSAKQLNTPELAGSISDI 526

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T  +   ++L  +ES V+ +PE +   L +L+ +GI L +DDFGT  S L+YL  +P
Sbjct: 527 LHTTGLNAQHLELEITESCVLSDPEDAIHKLEQLKALGIRLAMDDFGTGYSSLAYLKKLP 586

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S + G     +  AI +++I +  ++  T+IA+ +  E+    L   GCD  
Sbjct: 587 LDKLKIDKSFVDGLEINPEDAAICQAVIALGHSLNLTVIAEGLEHEVQATILAEQGCDQA 646

Query: 936 QDSHVASPLGFNSILK 951
           Q    A P+   +  +
Sbjct: 647 QGYFFAKPISAENFAR 662


>gi|330721392|gb|EGG99458.1| Sensory box/GGDEF family protein [gamma proteobacterium IMCC2047]
          Length = 572

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 127/437 (29%), Positives = 217/437 (49%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++S   +   A  D+LTG+ NR  F   L   L L+         ++++D+DK+K +N
Sbjct: 128 ALRESHAKLRLLAEVDSLTGLANRYMFESALKDALPLAKRLKR-SVAMVMLDLDKFKYVN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD +L  + +R+   ++  D+L RL G+ F I++   ++  K+      +  +
Sbjct: 187 DTLGHAAGDVLLSQVAKRLQGPIRDGDLLCRLGGDEFAILIHDLDDVSKVRRLTDRLLSA 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  P  +  +E+ V+ASIG +++      S +++K A++A+Y +K  G N  + +     
Sbjct: 247 LEAPFKVEGQELIVSASIGISTYPECASDSIQLMKCADVALYRSKEGGRNQAQFYSRELH 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ DL LA+E  EL+L Y P I    E+++G+EALI+W HP+ G IS  +F+
Sbjct: 307 EQIQTRIELERDLHLAIERHELFLHYQPQIDAQSEKVIGVEALIRWQHPEKGLISPDKFI 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQA--NMPPIFILINIASKDLLDNELCEGMQA 816
            IAEE  +I  I  ++ E   +   SW+ +       + I IN+++  L    L E +  
Sbjct: 367 PIAEETGLIVDIGNWVFETAIKQFQSWQLRFQSPNFNLLIAINLSAIQLGQAGLIETIDQ 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+S     P R++L  +ES +  N      LL  L   GI L +DDFGT  S L  L   
Sbjct: 427 LLSTFEVEPRRLELELTESAITDNNHLCIQLLKDLTDKGIVLAIDDFGTGYSSLQQLKKH 486

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + S +      +  + +L++I   AK +   I+A+ +  E        +  D 
Sbjct: 487 PFKVLKIDRSFIQTICENKDDLQLLKAIAAFAKTLGMEIVAEGVETEQQKNWCQNLQFDR 546

Query: 935 IQDSHVASPLGFNSILK 951
           IQ  + A P+      K
Sbjct: 547 IQGYYFAKPMSPADFEK 563


>gi|241205349|ref|YP_002976445.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859239|gb|ACS56906.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 551

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 133/530 (25%), Positives = 234/530 (44%), Gaps = 25/530 (4%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P +  +LG    +   P  ++  +    D+      L S      G      R+    
Sbjct: 32  FNP-VENLLGNELPASVKPAASFWEHFPELDKSAITLALRSL-----GDSAQPLRISGDL 85

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                  + I  +    GD+   +     I +++ +L   L  A  D LTG+PNR+ F +
Sbjct: 86  GTPASHGLTIYRI----GDLFAVVRSEETIDDERATL---LHLATHDPLTGLPNRRQFSE 138

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L   L  +   D    ++M +D+D +K +ND LG   GD +L     RI   L   D  
Sbjct: 139 DLAVSLQETEGSDEA-LSLMQLDLDDFKPVNDTLGHPAGDKLLQLAASRIQACLSSDDRA 197

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            RL+G+ F +I +   +  K    A  +  +   P  +    + V ASIG ++      +
Sbjct: 198 YRLAGDEFTVISMGPGHPAKGHQLAEVLVDAFKKPFTIDGIALFVGASIGISASPPDGTS 257

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPI 727
             +++K +++A+Y AK  G    + F  S              L +A+   +  + Y PI
Sbjct: 258 PEQLMKASDVALYAAKKEGRGRAKPFDPSMLELLEQRELLRRSLRMALVQQQFSVEYQPI 317

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  IVG EAL++W HP  G I  + F+ +AE   M+  I  ++LE+  R+ + W  
Sbjct: 318 --AEGGCIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPEIGAWVLEQACREAMKWPQ 375

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   + +N+++ + L + L + +   +      P R++L  +ESV++     +   
Sbjct: 376 NYI-----VAVNLSAAEFLTSGLTDRVSQTLDLIGLPPDRLELEITESVLLERTVNNIDT 430

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           L  L  +GI ++LDDFGT+ S LSYL   PFDT+K +   +T         AI+R II +
Sbjct: 431 LNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLESDLKSQAIVRCIINL 490

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A +++  + A+ +      + L  +GCD +Q   ++ PL   +I + +  
Sbjct: 491 AHDLDMRVTAEGVETPGQAEWLRSVGCDRLQGYLISRPLPVQAIGEFITR 540


>gi|212634078|ref|YP_002310603.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555562|gb|ACJ28016.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 682

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 216/442 (48%), Gaps = 7/442 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A +D LTG+PNR   L+ +   +  +     ++  ++ ID+D++K IND L
Sbjct: 241 RTQNKLRKMATRDALTGLPNRALLLETIAVTIQRAKV-QKVQFVLLFIDLDRFKNINDSL 299

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  LV + R + + +     +ARL G+ F I+        + ADF   +   +  
Sbjct: 300 GHALGDQFLVRIARILEDSVAEKGTVARLGGDEFVILADGLTTPCQAADFVSKLLLKLNT 359

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E  I   ASIG + +    + + +++++A++AMY AK  G N    F+       
Sbjct: 360 PMQLNEHAIHPAASIGISIFPDDGLAAEDLIRHADIAMYSAKAAGTNQWAFFKQQMTERA 419

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A+ N E  L + P + +   +++G EALI+W       IS   F+ +A
Sbjct: 420 AVRLRTEASLHDALINKEFVLHFQPKLDIQTGQLIGCEALIRWQ-KDGRLISPMSFIPVA 478

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  +++E   R I  W+++     + I +N+AS+    + L   ++    + 
Sbjct: 479 EETGIIIPLGQWVIEESCRTIKKWQNEY-NFSLPIAVNVASQQFEHSSLVPDIKKAALRY 537

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  +++  +E+ +M + + +   L  LR  G  + +DDFGT  S LSYL ++P  T+
Sbjct: 538 QIAPELLEIEITETSLMNDVQLAIKKLDELRSAGFGIAVDDFGTGYSSLSYLRHLPITTM 597

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++    K  AI  +I+ + K ++  I+A+ I  E  +  L   GC   Q  + +
Sbjct: 598 KIDRCFVSDL-PKESAIASTILMLGKQLDLKIVAEGIENEAQLTWLQERGCLIGQGYYFS 656

Query: 942 SPLGFNSIL-KLLKERFPLVKN 962
            PL  N    K +K+     K 
Sbjct: 657 KPLPLNIFEDKYIKQHSTEAKT 678


>gi|28899220|ref|NP_798825.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838295|ref|ZP_01990962.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|260362217|ref|ZP_05775201.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260879085|ref|ZP_05891440.1| PAS domain S-box/GGDEF domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897756|ref|ZP_05906252.1| PAS domain S-box/GGDEF domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|260900812|ref|ZP_05909207.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28807444|dbj|BAC60709.1| c-di-GMP phosphodiesterase A-related protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748284|gb|EDM59143.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088977|gb|EFO38672.1| PAS domain S-box/GGDEF domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308089544|gb|EFO39239.1| PAS domain S-box/GGDEF domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308108209|gb|EFO45749.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308111483|gb|EFO49023.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|328474244|gb|EGF45049.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus
           10329]
          Length = 679

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 140/577 (24%), Positives = 253/577 (43%), Gaps = 20/577 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440
                           + +     + +       D +   +     ++  P  A +LGL 
Sbjct: 108 FVVFHAVDTSEKQILVRSLEEAENKFAKLTQLLPDGLLLIEDDT-IISANPASARLLGLN 166

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +   + G   + L +I  N +  F   L + +  +          R    +   +     
Sbjct: 167 SPHELLGEELSRL-FIDENTKKVFSHRLSTLISDK--PFVCLTSARCGFERKVQLHADST 223

Query: 501 PMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            +  S   I+    +  D  +  K        ++  D+LT + NR  F  RL  ++    
Sbjct: 224 AILGSESQII----LIQDADDTPKHLSSASSEDSHIDSLTKLYNRFGFTKRLEQLIK--- 276

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   V  +DID +K IND LG  +GD V+  ++ R+  LL    I+  L G+ FGI
Sbjct: 277 --SQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRLLPNQAIIGHLGGDEFGI 334

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           IL    NS      +  +   I  P +L      +  SIG   +      +  +L+NA+ 
Sbjct: 335 ILPEPENSRMAEVLSDRIISLINQPFDLHHFSKRLACSIGSVRYPEDGQDARILLQNADT 394

Query: 680 AMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D  I G
Sbjct: 395 AMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSING 454

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W HP  G IS   F+ +AE   +I+ +   ++  +   +  W+ Q  + P  + 
Sbjct: 455 AEALVRWKHPVEGYISPGSFIPVAERAGLIEHLGRVVMRDVFNTVKRWKQQ-GILPGRVA 513

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++ +   + +L + M+ L+  T   PS I    +ES VM + E +  +L  ++K+G +
Sbjct: 514 INLSPEQFGNPQLIDFMEKLLRTTELDPSCITFELTESAVMSDSEHTLQMLNAIKKLGFA 573

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S LSYL   P D +K + + +       K++ ++ +II + K++E T++A
Sbjct: 574 LSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDALPKQVTVIENIINLGKSLELTVVA 633

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +        L+ + C+ IQ  H   P   + I +L
Sbjct: 634 EGVETHQQATLLSNLQCNSIQGFHFYRPQPKHEIEEL 670


>gi|307726144|ref|YP_003909357.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1003]
 gi|307586669|gb|ADN60066.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1003]
          Length = 692

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 198/434 (45%), Gaps = 7/434 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            IL  A  D LTG+PNR +  +R+   +  +         V+ +DID +K IND LG + 
Sbjct: 254 QILQLATLDTLTGLPNRATLTERIEHAI-HARRRQRSLFAVLFMDIDGFKTINDSLGHSA 312

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL +  +R+ + ++  D +ARL G+ F ++     +       A  + + +      
Sbjct: 313 GDQVLSAFAQRLLQCVRAGDTVARLGGDEFVVLAEQLASRNDAGALAEDVLERMRRDTWA 372

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
             + + V  SIG A +     T   +LK+A+ AMY AK  G +    F           +
Sbjct: 373 DSQPLQVMPSIGIALFPEDGDTVETLLKHADAAMYEAKRAGRSTYRFFERRMNEAAVRTL 432

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I+  L  A+      L + P      E + G EALI+  HP+ G ++  EF+ IAE   
Sbjct: 433 QIQNALREALAEQHFTLHFQPKFHGKSESLAGAEALIRLHHPQLGTLAPLEFIPIAERSG 492

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  ++L    R I  W  Q   P I + IN++ + LL  +L   M  +++    S 
Sbjct: 493 QIVQIGYWVLREACRQIRRWTAQGL-PAIKVAINLSPRQLLQADLVPTMLEIVNDEGVSC 551

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +I    +E+V M +  R+  +L      G  + +DDFGT  S L+YL       +K + 
Sbjct: 552 EQIMFEITETVAMQDAARTIEMLREFHASGFEVAIDDFGTGYSSLAYLQRFRVKQLKIDR 611

Query: 886 SLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
               G      +  AI+ +II +A ++E  ++A+ +  E  +  L  M CD +Q   +  
Sbjct: 612 FFTNGLDAHGPEGSAIVSAIIGLAHSLEMDVVAEGVETESQLHMLKAMRCDEMQGFLLGK 671

Query: 943 PLGFNSILKLLKER 956
           PL   +   LL+ER
Sbjct: 672 PLTAEAFGDLLRER 685


>gi|323528337|ref|YP_004230489.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323385339|gb|ADX57429.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 922

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 133/556 (23%), Positives = 259/556 (46%), Gaps = 22/556 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           +S A+   G+ V                P    I G A+  + G  +  L     +    
Sbjct: 366 RSRALDAIGNGVLITRATEHGEVFEYANPAFEQITGYANAQIVGRDQVSLSR--ASQHGI 423

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +  +R   +   R R AD    W    + P+ +   ++  +I + +D+TE  
Sbjct: 424 LFEQIREALADKRDGARL-VRSRRADGSAFWGQFYVAPVRD---ELTYHICVVSDLTELV 479

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            S + ++  A +D LT +PNR +  + +   +            ++ +D+D +K IND L
Sbjct: 480 DSRDRLVRQARRDALTELPNRVALRELIKEAIATRRE-----FALLFMDLDHFKDINDSL 534

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L  + RR+   +       R  G+ F  +L S   + +++     + ++   
Sbjct: 535 GHAAGDRLLREVARRLLAAIGNDGTATRYGGDEFVSMLDSPQENGRLSALLGRIGQAFEH 594

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P+ + + ++ V  S G A + +  + +  +LK+A+LAMY AK  G N VE F+ S  +  
Sbjct: 595 PVQIDDVQLRVQLSTGIACYPADGLDADTLLKHADLAMYDAKAHGRNRVERFKPSLANAA 654

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ +   L  A++ +   LVY P + +    I G+EAL++W+  + G I  + F+ +A
Sbjct: 655 DRRIALSHRLRAALDQNAFELVYQPQVDVRTYRISGVEALLRWNDAEVGTIGPATFIPLA 714

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E++ +I+ +  ++L         W +     P+ + +N++ + L+  + C  +Q  ++ +
Sbjct: 715 EDIGLIEQLGEWVLHTACAQAKRWEEA--QIPLRMSVNVSPRQLVVGDFCAVVQRTLAAS 772

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             + SR++L  +E  ++     +   L RL +IG+S+ +DDFGT  S LSYL     D +
Sbjct: 773 RLAASRLELEITEGAMV--ASGALPALRRLNEIGVSIAIDDFGTGYSSLSYLRAFHADRL 830

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G   + +  AI+R+II +A +I   ++A+ +     +  L   GC ++Q  +
Sbjct: 831 KIDMSFVRGIGASREDEAIIRAIIALAHSIGFEVVAEGVERADQLAFLADDGCAFVQGYY 890

Query: 940 VASPLGFNSILKLLKE 955
              PL    I   + +
Sbjct: 891 FCRPLAAAEIPHFVTQ 906


>gi|318041793|ref|ZP_07973749.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Synechococcus sp. CB0101]
          Length = 582

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 123/593 (20%), Positives = 258/593 (43%), Gaps = 23/593 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L    V Q           + ++ ER            W        V  +P+   +L 
Sbjct: 1   MLDPALVEQANPRLSGGISELLAEAERMQ------RCGSWRIQHDSGEVLWSPETYRLLN 54

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +    +   +   L  +H  +RD     +       R   + E R++ A++Q   ++ R 
Sbjct: 55  VDPN-LPASLELLLEQVHPEERDLLAGSVRQSWLSGR-PFRLEHRLQLANDQIVQVLHRG 112

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             + + NG  L  +     +++Q+     +      D +TG+PNR + +  L   +    
Sbjct: 113 ETICDDNGKALYTVSTLQRLSQQRNLQLELEQATHTDAITGLPNRLASISYLEQRIRELP 172

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +      ++ +D+D ++ IND  G+ +G+ +L      + + L+  D LARL  + F +
Sbjct: 173 YNRQ--IAILCLDLDNFQGINDSFGVEIGNRLLHWTGEHLRQQLQPSDWLARLDSDTFLV 230

Query: 620 I-LISENNSLKIADFAIAMRKSIAM--PINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           +   +  N  +  D A  ++ S+    P       I ++A +G +        +S +L+ 
Sbjct: 231 VRSDNLGNISQAIDLAQQLQDSLRQVVPRLDAPLPIQLSACVGVSIAPDHGSDASSLLQW 290

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A  A+  +K +G    + +   +S    + + +++ L  A++  EL L Y P      + 
Sbjct: 291 ANTALTESKRQGKGGCKVYSTAISQKIRETLDLEQRLARALDRQELLLHYQPQWD-RQQR 349

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           ++G EAL++W   +   I  + F+ +AE+  +I +I  ++LE+    +  W+ Q      
Sbjct: 350 LIGAEALLRWHTHRGETIPPNRFIPLAEQSGLIASIGHWVLEQAVAQLSQWQQQGLHLG- 408

Query: 795 FILINIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            + IN++   L D +   L + +  L       PS++++  +E+ ++ NP  +   L +L
Sbjct: 409 RLAINVSGHQL-DPDQHPLDQQLLRLCDHWKVEPSQLEVEVTETALISNPSAAADTLKQL 467

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
              G+SL +DDFGT  S L+ L  +P   +K +   ++    T    +I+++ I MA  +
Sbjct: 468 AAAGVSLAIDDFGTGFSSLASLQRLPLQRLKIDRCFVSDLPNTPSDRSIVKATILMAHEL 527

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             + +A+ +  E   ++L  +GCD  Q   +  P+    + +L+  +  +  N
Sbjct: 528 GLSCLAEGVETEEQRQQLLDLGCDSFQGYLLGKPMPAAQLQELMAAQTAMSSN 580


>gi|330951409|gb|EGH51669.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 712

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/615 (19%), Positives = 259/615 (42%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I   + 
Sbjct: 149 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDQLRGTQVLDY-IIEPKEG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 HWLDSGFYQHYRKSDTYRVHDAILRTAQGTQLPVALSCAALPAEQ---KAMVLTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     + ++L  +   D     V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKY-LVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   EIT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P I + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGRDFSVVYQPQIHMADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W      P + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGGWIFDQGAEQRQAWSRIFA-PDMVLSVCVSPTQFCLPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E+ ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITETALVNNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +     +++  A+  SII +++N++  +IA+ +      + L   GC  IQ 
Sbjct: 623 TLKLDRRFVASIAGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVIQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+G    L+ 
Sbjct: 683 FLIAHPMGPEEALRF 697


>gi|134292742|ref|YP_001116478.1| RNase II stability modulator [Burkholderia vietnamiensis G4]
 gi|134135899|gb|ABO57013.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
          Length = 667

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 127/608 (20%), Positives = 262/608 (43%), Gaps = 15/608 (2%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           + L +A+     +  +    V           ++  + V A    + G+    +     V
Sbjct: 63  LVLELALFGDPVSLHLVGRKVDTANWAGTASAYSDTESVAA--DLAHGLAFAEQ----VV 116

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
                +V   D              + G     + G    +  ++     +  R+ +  F
Sbjct: 117 SEVNSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSEEQGEQSRSNITGF 175

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
               R     E  +   +    +        S S  D    I    DITE++ + + +  
Sbjct: 176 FASNR-PFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQYLICSGIDITEERNAQQRLTE 234

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LTG+PNR +  +R+   L    +D   +  ++ +D+D +K++ND  G   GD +
Sbjct: 235 LANTDVLTGLPNRHAISERIRIALAADRSDVRGQVGILFLDLDNFKRVNDHYGHITGDRL 294

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  ++  IG  L     LARL G+ F ++         +   A  + + +  PI+L   E
Sbjct: 295 LQDVSAVIGGCLPSGATLARLGGDEFLVLFEHGTRP-LLEATAQIILERLRTPIHLGLVE 353

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKE 709
           +  + SIG A +     +   ++++A+ AMY AK  G +    F   ++   +  + +  
Sbjct: 354 VYTSCSIGIAMYPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDT 413

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+E+ +  L Y P++ +   ++  +EALI+W  P  G ++  EF+  AEE  +I  
Sbjct: 414 NLRKALEDEQFVLHYQPVVDIATGDVRSVEALIRWQSPDRGLVAPVEFIRFAEESGLIAP 473

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++        +   +A    + I +N++++ L D  + +   +++      PS + 
Sbjct: 474 LGRWVMRT--AAAQAAAWKAQGLGVRIAVNVSARQLQDMNVVDQFASILDSAGLKPSLVD 531

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES  + +   +  L+ + R++G  + LDDFGT  S LS L  +P D++K + S +T
Sbjct: 532 VELTESSFIEDENAAHGLMKQFRQLGAQIHLDDFGTGYSSLSQLSRLPLDSIKLDRSFIT 591

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G     +  A++ S++ +A+ +  +++A+ +    + + L ++  D  Q  + A P+   
Sbjct: 592 GIDRNTRSQALVSSVVSLARALSFSVVAEGVETRAEAEFLKQIDVDRAQGFYYARPMPAQ 651

Query: 948 SILKLLKE 955
           +    L E
Sbjct: 652 AFEAWLAE 659


>gi|172039090|ref|YP_001805591.1| hypothetical protein cce_4177 [Cyanothece sp. ATCC 51142]
 gi|171700544|gb|ACB53525.1| hypothetical protein cce_4177 [Cyanothece sp. ATCC 51142]
          Length = 850

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/567 (22%), Positives = 252/567 (44%), Gaps = 13/567 (2%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNW 452
                 + +  +R       + + +   +      + T      +LG +S  + G     
Sbjct: 278 RKRELKLTAGKDRYRFFFEQTQEGILVINPDTKHIIETNQAYCKLLGYSSAEIIGCNLYQ 337

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L  I+   RD F   L+         ++  F  R  +     +  +I   +    ++L  
Sbjct: 338 LLEIN---RDVFNEQLEKITPENPYIIRESFH-RHQNGSLLAVAGKISLTTYQGQEVLCL 393

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DI ++K++ E +      D LT +PNR+ F  +L   L  +   ++L   V+ ID
Sbjct: 394 I--VRDIRDRKQAEEELQYQLLHDPLTNLPNRELFKQQLGVALAHAQRHEHL-LAVIFID 450

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +  IN+ LG ++GD VL S   R+   ++  D + R   + F ++L    N+     
Sbjct: 451 IDSFTHINNTLGHSLGDKVLQSFGERLSSCIRAGDTVTRWGSDEFVLLLPQIKNTEDTVK 510

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + +++  P  L E  + +  SIG A +      +  +LKNA+ A+Y  K +G NH 
Sbjct: 511 LAQRIFETLQRPFVLDEHRLQIKCSIGIAIYPQDGDNAEGLLKNADTALYRTKEQGRNHY 570

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +     +     + ++  L  A+E  +  L Y P ++    +IVG+EAL++W+ P +G
Sbjct: 571 QFYSPHLTAEAELLLRLESLLHQALEKKQFSLYYQPQLQYKTGKIVGMEALLRWETPAFG 630

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ +A +  +I  ++ ++L+      +SW+     PPI + +N+++++     L
Sbjct: 631 MIMPQKFLPLAAKTNLILHLSKWVLKTACEQNLSWQKDGL-PPIPVTVNLSAREFQQPHL 689

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + +++ +T   P  ++L  +E  +  N   +R  L  L+ +G+ + LDDFG   S L
Sbjct: 690 ATVVASILDETGLDPQWLELELTELTLRQNLNLARKTLQDLQNLGVRIALDDFGRGFSSL 749

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL    F T+K +   +           ++ +I+ + K     ++A+ +     +K L 
Sbjct: 750 GYLKQFSFRTLKLHQDFIRDLRGTSEELGLIAAILAIGKGFNLRVVAEGVETSDQLKILE 809

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
            + C  IQ    + PL      +LL +
Sbjct: 810 DLDCTEIQGYWFSRPLPTKEATELLSK 836


>gi|146311833|ref|YP_001176907.1| RNase II stability modulator [Enterobacter sp. 638]
 gi|145318709|gb|ABP60856.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 663

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 245/565 (43%), Gaps = 13/565 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +          V  +  ++   D   +            GL    + G    +  ++
Sbjct: 103 ARDLVQSLSFAEQVVSEANSVIVILDQHGNIQRFNRLSEEYTGLKEQEVIGQN-VFKLFM 161

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             ++    +  +  F        + E  ++    Q  ++       S S  + +  I   
Sbjct: 162 SRSEAAASKRNISGFFRN-GSSYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSG 220

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++++ E +   A  D +TG+PNR +  + ++  +         +  V+ +D+D +
Sbjct: 221 TDITEERRAQERLRVLANTDTITGLPNRNAIHELISDSIS---QRGETQVGVVYLDLDNF 277

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L S+   I   L    +LARL G+ F I+L ++ +   +   A  
Sbjct: 278 KKVNDAYGHMFGDQLLQSVALAILSCLDEGQVLARLGGDEF-IVLATDTSQSTLEAMASR 336

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   +  P  +   EI    S+G +           +++NA+ AMY AK  G      F 
Sbjct: 337 ILTRLRQPFRIGLIEIYTGCSLGISLAPQHGTDRESIIRNADTAMYTAKESGRGKFCVFS 396

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    + + +  +L  A++  +L + Y P I     E+  LEAL++W  P+ G I  
Sbjct: 397 PEMNQRVFEYLWLDTNLRRALDKDQLLIHYQPKITWR-GEVRSLEALVRWQSPERGLIPP 455

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+  AEE  +I  +  +++  + R +  WRD+     + + +N++++ L D  +   +
Sbjct: 456 LEFISYAEESGLIVPLGRWVMLDVVRQVAKWRDKGIN--LRVAVNVSARQLADQTIFSDL 513

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  +    +    I +  +ES ++ N E +  ++ +  K+G  + LDDFGT  S LS L 
Sbjct: 514 KQALKDLNFEYCPIDVELTESCLIENEELALSVIQQFSKLGAQIHLDDFGTGYSSLSQLA 573

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K +   +    ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G 
Sbjct: 574 RFPIDAIKLDQVFVRDIHKQSISQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGV 633

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
           +  Q    A P+   +  +  K   
Sbjct: 634 NERQGFLFAKPMPAAAFERWFKRYQ 658


>gi|114330543|ref|YP_746765.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas eutropha C91]
 gi|114307557|gb|ABI58800.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas eutropha C91]
          Length = 706

 Score =  452 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 215/438 (49%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + I+  A  D LT +PNR + ++R+   +++S  D N+   ++ +D+D +K IND L
Sbjct: 250 RLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNM-FAILFMDLDGFKIINDSL 308

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD+VL +   R+   ++  D +ARL G+ F  +L +   +   ++ A ++   +  
Sbjct: 309 GHSTGDEVLKAFALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMADSILSRMRQ 368

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
            +    + + V  SIG   +     T  ++LKNA+ AMY AK  G +    F   ++   
Sbjct: 369 GLWANNQPLQVMPSIGITLFPQDGDTVEKLLKNADAAMYEAKRGGRSTYRFFETSMNEAA 428

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + I+  L  A++     L + P  R  + E+VG EAL++  HP++G +S  EF+ IA
Sbjct: 429 TRALQIQRVLHEALKVGYFSLYFQPKFRGSNSELVGAEALLRLRHPEFGLLSPMEFIPIA 488

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    + +  W++    P I + IN++ + L   +L   M  ++   
Sbjct: 489 ERSGQIIPIGYWVVRETCQQLRRWKEDGL-PAIKVAINLSPRQLEQPDLITMMLDIVQSE 547

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                +I    +E+V M +  ++  ++ + ++    + +DDFGT  S L+YL       +
Sbjct: 548 QIPCEQIMFEITETVAMQDAPKTTDMIHKFQENNFEIAIDDFGTGYSSLAYLQRFRAKQL 607

Query: 882 KFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +    +G      +  AI+ +II +A  +   ++A+ +  +  + +L  M CD +Q  
Sbjct: 608 KIDRFFTSGMDECGPEGSAIVSAIIKLAHTLGMDVVAEGVETDSQLTKLKSMMCDEVQGF 667

Query: 939 HVASPLGFNSILKLLKER 956
            +  P+  +   KLL + 
Sbjct: 668 LLGKPVTADEFSKLLHQH 685


>gi|167585855|ref|ZP_02378243.1| diguanylate cyclase/phosphodiesterase [Burkholderia ubonensis Bu]
          Length = 779

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 214/435 (49%), Gaps = 7/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + ++    R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPSSLS--RLGLLFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     L+R+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 386 NAGDIVLQMTASRLADAVGDEGALSRIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 506 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRHITGFEALARWDHPEHGIISANEFISIAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + INI+       +L E +   + +T  
Sbjct: 566 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAINISPVQFWRGDLIETISRTLQETGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 625 EAGRLELEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  +  L+ +G    Q    +
Sbjct: 685 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQVAWLSALGEIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKER 956
            P+  ++I  LL   
Sbjct: 745 RPVPADAIPALLARY 759


>gi|254241999|ref|ZP_04935321.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195377|gb|EAZ59440.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 785

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 152/696 (21%), Positives = 283/696 (40%), Gaps = 57/696 (8%)

Query: 279 HAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
           H +      +      I    F     +    A    + +  + L       Y  M    
Sbjct: 115 HPRRWQWVGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLAMYMTA 174

Query: 336 RAVLLIPAWILIF--IWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           R    +   +L    I      M  T       +        L  + +LI        LA
Sbjct: 175 RPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALA 234

Query: 393 TGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              + +G  S   R      SL + G+                        G+A+  +  
Sbjct: 235 AVPYLRGRRSARYRYMKLIASLLLAGAI-----------------AAMHFTGMAALVLSV 277

Query: 448 PIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           P    L      D         +L S +                     W     +    
Sbjct: 278 PAGTPLELQASADSLRLGWLTGVLASAIAACG----------------IWAAWSEKQRER 321

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +  R   + N +     +   +   A  D+LTG+ NR +F +     L+        
Sbjct: 322 RLSENSRVNALLNQLD---HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG 378

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +D+D +K+IND LG   GD++L  ++ RI  +L+  D++AR +G+ F  +L   
Sbjct: 379 -LAVMFLDLDHFKRINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEF-CVLADL 436

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    +  + + +  PI L  R + +T S+G + + +      E+LKNA LA++ +
Sbjct: 437 TQDHEAHILSQRLMQKMKEPIALDGRTLVMTVSVGVSLYPNDGEQCEELLKNAGLALHQS 496

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N+ + F        +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL+
Sbjct: 497 KACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALV 556

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +    F+ +AE   MI  ++ ++L R  RD+ S    A    + + +N  +
Sbjct: 557 RWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCA 615

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +L    L + ++  + +   +   ++L  +E  +M N +++  LL RLR++G+SL++DD
Sbjct: 616 SNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDD 675

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +     +++ + I ++II MA+ +   ++A+ +  
Sbjct: 676 FGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVET 735

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L    C+ +Q    + PL   ++ + L+  
Sbjct: 736 PQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAY 771


>gi|224823771|ref|ZP_03696880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224604226|gb|EEG10400.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 953

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/581 (20%), Positives = 233/581 (40%), Gaps = 21/581 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   + ++ ER  + +   GD V   D         P    ++G      HG    
Sbjct: 360 DRKLAEGALHAEQERAQVTLASIGDAVITLDGGGQVDYLNPVAEQLIGHPLAQAHGRRLG 419

Query: 452 WL-----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            L       +          +L+       GR      +   D     + +   P+ +S 
Sbjct: 420 ALCCLLEEGLSPERPVRLEPLLNEVAPPGAGR---NLLLERHDGSRVSVCMVSAPIFDSQ 476

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +   + + +D+T ++  +E +   A  D LTG+ NR  F  RLT +L+ +        
Sbjct: 477 GGVSGKVLVFHDMTRERLYIESLSWQASHDALTGLTNRHEFERRLTRLLEATVGRQQYHV 536

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M +D+D++K +ND  G A GD++L  +   + + L+  D LARL G+ FG++L +   
Sbjct: 537 -LMYLDLDQFKVVNDTCGHAAGDELLRQVCVLLSQQLREGDTLARLGGDEFGVLLQNCPP 595

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +       +    +  +   +   ++ASIG    +    T  E+++ A++A Y AK 
Sbjct: 596 EAALPVAEKLRQTVCDLHFSWNGQPFAISASIGVVHISGVPTTLKEVMRAADVACYMAKE 655

Query: 687 RGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEAL 741
           +G N  + +         R   +   + L  A+E+    L    I  L +       E L
Sbjct: 656 KGRNRAQLYAADDAELTVRYGEMEWVQRLHRALEDDRFRLYAQTIAPLGEGSAAPHFELL 715

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++        +  S F+  AE   ++  I+ +++      + +    +        IN++
Sbjct: 716 LRLLDEYGMLVPPSAFIPAAERYNLMATIDRWVVSTALAMLAA--RTSPGSEWTCAINLS 773

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L D++    ++A ++ +   P+ +    +E+  + N   +   +  LR++G   +LD
Sbjct: 774 GASLCDDDFLGFLRAELAGSGIDPAHLCFEVTETSAIANLACATEFMRELRQLGCRFSLD 833

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S   YL ++P D +K +G  +          A++  I  +   +    IA+   
Sbjct: 834 DFGAGMSSFGYLKHLPVDFLKIDGGFVKDMLDDPVDHAMVEVINHIGHVMGKQTIAEFAE 893

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
               ++ L RMG DY Q   VA PL    +   L + FP  
Sbjct: 894 HPGILEALKRMGVDYAQGYGVARPLPLAEV---LAQHFPAT 931



 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 1/175 (0%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               +A   R+   ++    +    ++++       Q +  +  F Q +    ER +LAV
Sbjct: 192 FSNVLAEGGRVIQRLLAAVNLVAATVLILFALLRTRQLIRQSELFEQALGESEERLALAV 251

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
            GS   +WDW+I    V  +P    +LGLA   +   I  +  ++H +D    R  L+  
Sbjct: 252 NGSDYGIWDWNIAEGSVYYSPRFKAMLGLAEHELEDSIGAFWAHLHPDDTVPTRDSLERH 311

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +    G    E+R+R  +  + W   R + + ++ G  +R  G   DIT++K + 
Sbjct: 312 LAGEGG-YDVEYRLRTRNGGYRWFRARGQALRDAAGRAVRMSGSIFDITDRKLAE 365


>gi|332527529|ref|ZP_08403581.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111936|gb|EGJ11914.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 698

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/604 (19%), Positives = 236/604 (39%), Gaps = 22/604 (3%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
             L  +     L GG   +        ++             +        +  +GD + 
Sbjct: 87  GMLHVERHVQPLPGGAAGVP-THALVTLRDRSGEQRAEDEREAVVAELQATLESTGDGIL 145

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGP----IRNWLPY--IHINDRDNFRTILDSFVG 473
             D+           A I G+    +       I +W+    +  +  +     L +   
Sbjct: 146 VTDLDGRVRAFNRRFAQIWGVPDEMLEARDSAGIHDWMRRRALDADGYERRLAALLAAPL 205

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                     R+   + Q   +    RP+    G     +   +D+TE  K        +
Sbjct: 206 LSSTE-----RLELVEGQT--VQRVTRPLWGRAG-PQGRVYSFSDLTELVKVRALSEALS 257

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR    ++++        +      ++V+D+D ++++ND  G  V + VL 
Sbjct: 258 SHDALTRLPNRALLAEKVSDAAARWRREQQ-SFALLVVDLDHFRRVNDSFGQQVANRVLC 316

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  RIG +L+  D+LAR+ G+ F ++L   + +         +      P        +
Sbjct: 317 EVGERIGAVLRSQDVLARIGGDNFAVLLQDADRASAQKAVLRVLNIVNGQPFEAEGTPFS 376

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVSSFRSDRVMIKEDL 711
           +T SIG A          ++++ AE A+  AK  G                  V +   +
Sbjct: 377 LTCSIGIALCPQDGHALDDLVRQAEAAVRSAKAAGRAGYRFAEPVPGGEAHSHVRLVHAM 436

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++     L Y P IR  D  + G EAL++W  P+ G I+ + F+ +AE+   I  + 
Sbjct: 437 REALKEGHFRLHYQPQIRFRDGAVCGAEALLRWRDPQLGEIAPAAFIPVAEDSGFIVTLG 496

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +  R    W +      + + IN+++      +    +  +++ +      ++L 
Sbjct: 497 NWVLSQAVRQAALWHEAGR--SLTVAINVSALQFRQPDFVSQVADVLAVSGLPAHLLELE 554

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+++   + +   L  L ++G+ L+LDDFGT  S L  L  +P   +K + S + G 
Sbjct: 555 LTESILVDKADEALERLQALERLGVQLSLDDFGTGYSCLGSLKRVPIGRLKIDRSFVAGL 614

Query: 892 TEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +      ++R+I  +A+ +   +IA+ +  E   + L  +GCD  Q    A  +   + 
Sbjct: 615 PDDDTDVGLVRAITQLAQALGKRVIAEGVENEAQRRFLAELGCDAFQGFLYAPAMDATAF 674

Query: 950 LKLL 953
            + L
Sbjct: 675 DRHL 678


>gi|17549034|ref|NP_522374.1| hypothetical protein RS01894 [Ralstonia solanacearum GMI1000]
 gi|17431285|emb|CAD17964.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 663

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 217/456 (47%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F  RL   L+ +         ++++D+D +K +ND L
Sbjct: 190 QAEAHLDYLAHVDSVTDLPNRHAFNQRLREALESAGQAG--AIGLLLLDLDNFKVVNDTL 247

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILI-----SENNSLKIA---D 632
           G   GD +L  + RR+ ++++      +L R+ G+ F +I       S  N         
Sbjct: 248 GHNNGDRLLRQVARRLNDVIEQSNVRAVLCRIGGDEFAVIAELSRRASITNPEAAELSSA 307

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L   +I VTAS+G + +         + +NA+ AMY AK+RG N  
Sbjct: 308 LANRILAALAAPFALDLHQIYVTASVGVSLYPHDAGDVQSLTRNADAAMYSAKNRGKNAA 367

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII----------RLMDEEIVGLEA 740
             F     +  R  +  + DL  A+E+ EL LVY P I           +    + G+EA
Sbjct: 368 ACFTAEMDQQARRRLRVESDLRRALEHEELLLVYQPQIRLDALAQAGAHVCSAHVHGVEA 427

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  + L++L    +    W        + + +N+
Sbjct: 428 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGLWVLRTACQQAAQWLHAGRAT-LRVAVNL 486

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D  L E +  ++ +T   P  ++L  +ESV+M + + +  LL  L   G++L++
Sbjct: 487 SPRQARDPALAENVLGILRETGLPPHLLELEITESVLMEDIDANIRLLEALHAAGVNLSI 546

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K + S +        AI  ++I MA ++   ++A+ +  
Sbjct: 547 DDFGTGYSSLAYLQRFPIHKLKIDRSFVQRMPGDGEAIASAVIAMAHSLRMQVVAEGVEH 606

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L   GCD  Q    + PL    ++  L+ +
Sbjct: 607 AGQLAWLRAAGCDLGQGYLFSRPLHAEQLMSWLRRQ 642


>gi|254229316|ref|ZP_04922733.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262393392|ref|YP_003285246.1| C-di-GMP phosphodiesterase A-like protein [Vibrio sp. Ex25]
 gi|151938124|gb|EDN56965.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262336986|gb|ACY50781.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
          Length = 679

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 255/581 (43%), Gaps = 24/581 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIATI 437
           I                 + +     + +       D +   + DI    ++  P  A +
Sbjct: 106 IRFVVFHAVDTSEKQILVRSLEESESKFAKLTQLLPDGLLLIEDDI---IISANPASARL 162

Query: 438 LGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           LGL +   + G   + L +I  N +  F   L + +  +          R    +   + 
Sbjct: 163 LGLNSPHELLGEELSRL-FIDENSKKVFSHRLSALISDK--PFVCLTSARCGFERKVQLH 219

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                +  S   I+    +  D  +  K        +   D+LT + NR  F  RL  ++
Sbjct: 220 ADSTAILGSESQII----LIQDADDTPKNLSSASNEDIHIDSLTKLYNRFGFTKRLEQLI 275

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                       V  +DID +K IND LG  +GD V+  ++ R+  LL    I+  L G+
Sbjct: 276 KK-----QTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRLLPNQAIIGHLGGD 330

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            FG+IL    N+      +  +   I  P +L      +  SIG   +      +  +L+
Sbjct: 331 EFGVILPEPENTRMAEILSDRIISLINQPFDLHHFSKRLACSIGSVRYPEDGQDARILLQ 390

Query: 676 NAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D 
Sbjct: 391 NADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDF 450

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EAL++W HP  G IS   F+ +AE   +I+ +   ++  +   +  W+ Q  + P
Sbjct: 451 SINGAEALVRWKHPVEGYISPGSFIPVAERAGLIEHLGRVVMRDVFNTVKRWKQQ-GILP 509

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E +  +L  ++K
Sbjct: 510 GRVAINLSPEQFGNPQLIDFMEKLLRTTELDPSCITFELTESAVMSDSEHTLQMLNAIKK 569

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
           +G +L++DDFGT  S LSYL   P D +K + + +       K++ ++ +II + K+++ 
Sbjct: 570 LGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTLPKQVTVIENIINLGKSLDL 629

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           T++A+ +        L+ + C+ IQ  H   P   + I +L
Sbjct: 630 TVVAEGVETHQQATLLSNLQCNAIQGFHFYRPQPKHEIEEL 670


>gi|300693753|ref|YP_003749726.1| signal transduction eal-ggdef domains transmembrane protein
           [Ralstonia solanacearum PSI07]
 gi|299075790|emb|CBJ35095.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum PSI07]
          Length = 661

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 219/456 (48%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F ++L   L  +         ++++D+D +K +ND L
Sbjct: 188 QAEARLDYLAHVDSVTELPNRHAFNEQLQDALRRTGQTG--AIGLLLLDLDNFKVVNDTL 245

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGII--------LISENNSLKIAD 632
           G + GD +L  + RR+ +++       +L R+ G+ F +I        + ++  +     
Sbjct: 246 GHSNGDRLLRQVARRLNDVIAQSNARAVLCRIGGDEFAVIAELSRRASIATDEAAEHANA 305

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L   +I VTAS+G + +         + +NA+ AMY+AK+RG N  
Sbjct: 306 LANRILAALAAPFALDLHQIYVTASVGVSLYPHDAGDVQSLTRNADAAMYYAKNRGKNAA 365

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII----------RLMDEEIVGLEA 740
             F     +  R  +  + DL  A++  EL LVY P I           +    + G EA
Sbjct: 366 ACFTAEMDQQARRRLRVESDLRRALDREELQLVYQPQIRLDALAADDGHVCSAHLHGAEA 425

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  + L++L    +    W  +     + + +N+
Sbjct: 426 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGLWVLRTACQQAAQWLREGRAT-LRVAVNL 484

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D  L E +  ++ +T   P  ++L  +ESV+M + + +  LL  L   G++L++
Sbjct: 485 SPRQTRDPALVENVLGILRETGLPPHLLELEITESVLMEDIDANIRLLEALHAAGVNLSI 544

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K + S +        AI  ++I MA ++   ++A+ +  
Sbjct: 545 DDFGTGYSSLAYLQRFPIHKLKIDRSFVQRMPGDGEAIAGAVIAMAHSLRMQVVAEGVEH 604

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L   GCD  Q    + PL    ++  L+ +
Sbjct: 605 AAQLAWLRAAGCDLGQGYLFSRPLHAEQLMSWLRRQ 640


>gi|213967857|ref|ZP_03396003.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213927200|gb|EEB60749.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 719

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 243/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D   +     P I
Sbjct: 129 VLKPKVQTLLEQQRNRRALQQLSMELESARAFNASVLANVAEGILVVDEAGNISFANPAI 188

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R A      
Sbjct: 189 CQLLNASVDQLRGTQVLDY-VIEPQVSSWLESGFYQHYRKADTYRVHDAILRTAQGSQLP 247

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 248 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 304

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 305 LLRNERADKY-LVVLFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGG 363

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +IT+ AS+G A++         +L
Sbjct: 364 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVNGVDITLGASVGIATFPDCGSNLDGLL 423

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 424 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVGD 483

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W      P
Sbjct: 484 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQAWSGVFA-P 542

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E  ++ N   S   L  L 
Sbjct: 543 DVVLSVCVSPTQFCMPNLASELKRAMDRFGLKPGQIEVEITEGSLVHNLTHSHKQLKLLH 602

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +    E R   A+ RSII +++N++
Sbjct: 603 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVESRREAAMARSIIDLSRNLD 662

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 663 MLVIAEGVETIEQYQWLADNGCQVMQGFLIAHPMVAEDALHF 704


>gi|293607462|ref|ZP_06689800.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814164|gb|EFF73307.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 726

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/583 (22%), Positives = 227/583 (38%), Gaps = 23/583 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   +              R       S D +   D              + G    
Sbjct: 157 AALVMDRMELHRLDYAKSISQARFENIAATSPDAIVCSDANGAITFWNSAAEKLFGYTPE 216

Query: 444 SMHGPIRNWL-----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            +     + +       +H  +    RT        +          +  D       I 
Sbjct: 217 EIAQLPSSVIVPFSWKAVHAEELLRLRTGQKMEFANQTVTTTA----KRKDGSEFPAEIS 272

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
               +   G       I  DITE+++S + +   A +D LT +PNR ++ + LT  L   
Sbjct: 273 FS--TWQEGRTTGIGAIIRDITERRQSEDRLYRLATRDPLTDLPNRGAWRECLTKALKKE 330

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                   TV+++D+D +K+IND  G + GD VL  L  R+  L     +L RL G+ F 
Sbjct: 331 KQ-----LTVLLLDLDGFKEINDTFGHSAGDAVLKQLAARLDALFDQTIMLGRLGGDEFV 385

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    N   IA        S++ P + L   I V  S+G A          ++L  A+
Sbjct: 386 VLLPGAENRAAIAAAEAL-IASLSAPYDYLGHLIEVGVSVGVALGPQHGSVPEDLLGAAD 444

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+Y AK  G    E F  +       R   + +L  A E  E  + Y P +   +  ++
Sbjct: 445 LALYKAKAAGKGRYELFTPAIREVAVARRTFERELKSAFEAGEFEMHYQPQVYTANRRVL 504

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W+HP  G ++ + F+ +         +  ++L+R  +D   WR         I
Sbjct: 505 GAEALIRWNHPVRGMLTPASFIDVLGGKPSAAKVGEWILQRACQDAAPWRAAIPG--FRI 562

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+         L   +Q +++ T    + ++L   E++V+ N   +  LL  LR  G+
Sbjct: 563 SVNLFEAQFHAGTLLTTVQDVLASTGTPAAALELEIVENIVVRNDSATLALLHGLRDAGV 622

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
            L  DD+GT  + LS L   P   +K + S M    +  +  A++R+I+ + ++    +I
Sbjct: 623 GLAFDDYGTGYASLSLLKRYPVSRLKIDKSFMRDVLTDREDAAVVRAIVYLGRSFGMEVI 682

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ I  +  +  L    C   Q     +P+      + L  + 
Sbjct: 683 AEGIETDDQLGFLIENACQQAQGFLFGAPMPAPVFSQWLARQL 725


>gi|331014538|gb|EGH94594.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 712

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 243/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D   +     P I
Sbjct: 122 VLKPKVQTLLEQQRNRRALQQLSMELESARAFNASVLANVAEGILVVDEAGNISFANPAI 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R A      
Sbjct: 182 CQLLNASVDQLRGTQVLDY-VIEPQVSSWLESGFYQHYRKADTYRVHDAILRTAQGSQLP 240

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 241 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 297

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 298 LLRNERADKY-LVVLFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGG 356

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +IT+ AS+G A++         +L
Sbjct: 357 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVNGVDITLGASVGIATFPDCGSNLDGLL 416

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 417 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVGD 476

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W      P
Sbjct: 477 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQAWNGVFA-P 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E  ++ N   S   L  L 
Sbjct: 536 DVVLSVCVSPTQFCMPNLASELKRAMDRFGLKPGQIEVEITEGSLVHNLTHSHKQLKLLH 595

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +    E R   A+ RSII +++N++
Sbjct: 596 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVESRREAAMARSIIDLSRNLD 655

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 656 MLVIAEGVETIEQYQWLADNGCQVMQGFLIAHPMVAEEALHF 697


>gi|146313336|ref|YP_001178410.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145320212|gb|ABP62359.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 692

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/433 (28%), Positives = 213/433 (49%), Gaps = 7/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LT +PNR    DRL+  ++ +   +     +M +D+D +K +ND  
Sbjct: 252 EANRELAQLALHDTLTRLPNRILLEDRLSQAINKADR-EGTHFALMFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV++T+R+   LK    LAR+ G+ F  +L+  +     A  A A+ ++I  
Sbjct: 311 GHVTGDKLLVAVTKRLLLPLKGQYTLARIGGDEFV-LLVEVSGPDDAASLANALVRAIDS 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P ++   E+ VT SIG A +     T  EM+ NA+ AMYH KH G N    F+ S     
Sbjct: 370 PFSVDPYELVVTVSIGIALYPHDGKTDREMMFNADAAMYHTKHVGRNGYHFFQPSMNTLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +  DL +AVE  EL L Y P        I+G EAL++W+HPK G ++   F+ +A
Sbjct: 430 QTHLQLMNDLWMAVERDELRLHYQPKFHAPAGPILGFEALLRWEHPKQGLLTPDVFLQLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++    R + +W  Q       + +N+++       L   +   ++  
Sbjct: 490 EKTGLIIPIGNWVINEACRQLRAWHIQ-GHTNWSMAVNLSTLQFEQPSLVNTVLDCLALH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M NP+ S  +L  L   G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 QLPPESLILEVTETTAMNNPDESVRVLTELTNAGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +       I+ +I+ +AK +   ++A+ +  E     LT +GC+ +Q   
Sbjct: 609 KIDRAFVKDLSGESDDATIVSAIVALAKTLNLKVVAEGVETEAQQAFLTELGCNMLQGYL 668

Query: 940 VASPLGFNSILKL 952
           +  P+   ++ +L
Sbjct: 669 LGKPVSAQAVEEL 681


>gi|17546264|ref|NP_519666.1| hypothetical protein RSc1545 [Ralstonia solanacearum GMI1000]
 gi|17428561|emb|CAD15247.1| probable signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 776

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 134/740 (18%), Positives = 289/740 (39%), Gaps = 42/740 (5%)

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHA-------- 280
           + Y  +     +  +   +           + L+ +  I +  +    R           
Sbjct: 37  MMYFILISSTWAVALTYRAITPAWLTVGIPLLLTLACAIRVLHWWQSRRIDPTPELALGA 96

Query: 281 --KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
             +   +               F+Y             +I +    F + H         
Sbjct: 97  LTRTNRLASVIAVSFTAWSLALFHYGDAYTRSYLAFYMAITVIACIFCLMHLRSAAITVT 156

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            ++    + F    G    I   ++  ++   L+  L++        V     A    ++
Sbjct: 157 AIVNGAFIAFFAATGQPTFIAIAINMALVSFGLLVILMVNYRDFTLMVNAQTEARRREAE 216

Query: 399 --GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPY 455
              +    +   +AV+      +  +   +        IA +L +   ++ G   +   +
Sbjct: 217 QSRLLHMIDDMPVAVMTVEPGTFAINYANNTSKRLIDRIAHLLPIEPDALLGTSIDVF-H 275

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H   +        +     R RL  E            + +++  +  ++G  +  +  
Sbjct: 276 AHPEHQRRLLADPANLPHNTRIRLGPEV-----------LDLKVSAVRANDGSYIGPMLT 324

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +T++ ++   I   A  D LTG+ NR +F ++L   L         R  ++ ID+D 
Sbjct: 325 WALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLAA----PEARLGLLYIDLDG 380

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           +K +ND  G   GD +L  + +R+     +    +ARL G+ F +++  + ++ + A  A
Sbjct: 381 FKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHD-DADRAATLA 439

Query: 635 IAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            A+ +++  P  L  ++ + + ASIG A   +    +  +L  A++A+Y AK  G     
Sbjct: 440 TALIEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLAR 499

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F        +    ++  L  A+E+   L++ Y PI+ +   ++   EAL++W H + G
Sbjct: 500 LFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERG 559

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE+  +I  +  F+L R  R+   W D        + +N++   L    L
Sbjct: 560 WVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWED-----GARVAVNVSPMQLGKATL 614

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + + A +  +  +P R+++  +E+ ++ N   S   L +L  +G+ + LDDFGT  S L
Sbjct: 615 AQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSL 674

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++L   PFD +K + S +           ++R+I  + + +  T +A+ +  +  ++ + 
Sbjct: 675 AHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIR 734

Query: 929 RMGCDYIQDSHVASPLGFNS 948
             GC   Q  +   P   + 
Sbjct: 735 EAGCTEAQGYYYGRPAPSDE 754


>gi|170722098|ref|YP_001749786.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169760101|gb|ACA73417.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 533

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 212/440 (48%), Gaps = 12/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + S   +   A  D +TG+PNR  F  +L   +            V+++DID +K++N
Sbjct: 93  ELRSSQAQLERLAHYDTITGLPNRVLFQQQLADAIL-----QGDGLAVLMLDIDGFKQVN 147

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A+GD +L   T R  + L   D + RL G+ F  +L       +++     + + 
Sbjct: 148 DSLGHAMGDLLLQQATARFLQELASADRVCRLGGDEFVFMLRGTQG--QVSHQVAHLLRC 205

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +  P +L      VT SIG A           +L++A+ AMY AK  G N    +     
Sbjct: 206 LQRPFDLNGSTALVTGSIGLARCPQHGEDVGSLLRHADTAMYAAKESGRNAWRPYHTDMT 265

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L  A++ +E  L Y P + L    + G+EAL++W  P  G +S +EF+
Sbjct: 266 ARLQQRLELERNLRRALQANEFELWYQPKVDLFSGCLQGVEALLRWRDPVHGLVSPAEFI 325

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  +   +L      + +WRD+ +  P  + IN+A+  +  ++    +   +
Sbjct: 326 PLAERTGLIIPLGERVLALACAQMAAWRDE-DRIPGPMAINVAALQIERSDYVSSLAQAL 384

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +PS +++  +ES++M + +++  +L +L+ +G++  +DDFGT  S L+YL  +P 
Sbjct: 385 ECHGLAPSLLEVEITESLLMESQQQACEVLAQLQAMGVTTAVDDFGTGYSSLAYLRALPI 444

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +      +  +A+ R+II +   +   I A+ I  +     L   GCD  Q
Sbjct: 445 DHLKIDRAFIKDLPDDDDAVAVARAIIDLGHALGFRITAEGIETQEQYDFLRNAGCDQGQ 504

Query: 937 DSHVASPLGFNSILKLLKER 956
              +A P+    + + L  R
Sbjct: 505 GYLLARPMPAADLARWLATR 524


>gi|190891081|ref|YP_001977623.1| signal-transducer protein [Rhizobium etli CIAT 652]
 gi|190696360|gb|ACE90445.1| putative signal-transducer protein [Rhizobium etli CIAT 652]
          Length = 628

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 140/575 (24%), Positives = 254/575 (44%), Gaps = 31/575 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-------- 444
               SQ          + +      +  +D  +           + GLA           
Sbjct: 62  LSALSQAFDGQKRLFEIVLNNLPLGLSVFDADQRLTLYNSRFHQLFGLAPEDIAAGATIT 121

Query: 445 -MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +   +R     +    R   R    S         + E+++   D +   +   +  +S
Sbjct: 122 DLLEKMRGRESTVSPGGRRAHRPA--SAKAGSSRIRRREWQM--NDGRI--IQSVVTVLS 175

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +      I I  DITE +K+ E I   A  D LT +PNR  F +++   L  +    +
Sbjct: 176 DGSN-----IAIHADITEDRKAAERITYLAHHDLLTDLPNRIYFREQVDATL--AERKPD 228

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ +++D++K IN+ +G++VGD +L  +  RI       + LARL  + F I+   
Sbjct: 229 EQIALVHLNLDRFKSINNTIGVSVGDKILQQVAGRIRASAGSENTLARLGSDEFAILQTG 288

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  +R++++ P    E+ + ++ S+G A        +  +LKNA +A+ H
Sbjct: 289 NRQPRSATALADRIRRALSEPFLHGEKRVELSVSMGIAIAPRDGEETDILLKNAGVALLH 348

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F        ++   ++ DL  AVE  E  L Y P+  L  ++I G EAL
Sbjct: 349 AKADGRKRERFFTSEMEAQMQLRHALEADLLAAVEKGEFELHYQPLYDLSKQQICGFEAL 408

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+HP  G +S  +F+ +AEE+ +I  I  ++L +   D   W +      I + +N++
Sbjct: 409 IRWNHPIRGRVSPMDFIPLAEEVGLIVDIGRWVLRQACSDAAQWPE-----GIKVAVNVS 463

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +     ++L + +   ++     PSR++L  +ESV+M N      +L  L++ GI +++D
Sbjct: 464 AIQFSGSDLMQDVSEALAAAALLPSRLELEITESVLMENLSEVLPILHALKERGIRISMD 523

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   PFD +K + S +      ++  AI+R+II +   +   +  + + 
Sbjct: 524 DFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAHAIMRAIILLGDALGMRVTVEGVE 583

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               +  L    CD IQ  H++ P     +  LL 
Sbjct: 584 TAAQLALLECEECDEIQGYHISPPRPVRDVPHLLS 618


>gi|116690374|ref|YP_835997.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|254247564|ref|ZP_04940885.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
 gi|116648463|gb|ABK09104.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           HI2424]
 gi|124872340|gb|EAY64056.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184]
          Length = 790

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 339 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 397 NAGDIVLQMTASRLADAVGDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 456

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 457 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 516

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 517 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGVISANEFISIAES 576

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + +NI+       +L E +   +  T  
Sbjct: 577 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAVNISPVQFWRGDLIETISQALQDTGI 635

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 636 PANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 695

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 696 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQITWLSALGEIEAQGFLFS 755

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 756 RPVPADAIPALIAR 769


>gi|226943291|ref|YP_002798364.1| intracellular signalling protein [Azotobacter vinelandii DJ]
 gi|226718218|gb|ACO77389.1| intracellular signalling protein with diguanylate cyclase and
           phosphodiesterase activities [Azotobacter vinelandii DJ]
          Length = 586

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 135/578 (23%), Positives = 257/578 (44%), Gaps = 27/578 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             + + LAVL     + ++      +        I G +  S+       L      +R 
Sbjct: 12  AEQLELLAVLEHAMAIAEFAPNGRVLRVNDKYRQIFGYSEQSIGQRRHQQLCAPDPTNRH 71

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-- 520
           +F  +       R       +   +AD +  W+     P+ +  G + R + IA D++  
Sbjct: 72  DFDGLWAGLEMGRPA--NGRYPYASADGRCLWLESTYVPIRDDAGRLKRIVQIAIDVSVQ 129

Query: 521 ----------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                           E+++S + I   AF D LT +PNR   L +    +  +   +  
Sbjct: 130 TEREEVARQRCRQLMLEREESHDRIRQLAFYDPLTDLPNRGLLLIQADQAIARARR-ERT 188

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+  D+D++K IND LG   GD +L ++ +R+   L+  DI+ RL+G+ F ++L   
Sbjct: 189 ALNVLFFDLDRFKLINDTLGHPAGDLMLRTIAQRLRSELRTTDIVGRLAGDEFVVVLADC 248

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +  +    ++K ++    +    +  +ASIG + +         +L  A+LAMY A
Sbjct: 249 -DLRQTTETIRRIQKQLSASCQIAGATLAPSASIGISRFPDDGEDMETLLYYADLAMYQA 307

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G      F   ++    +R  ++ DL  A+   +L L Y P I L    + G+EAL 
Sbjct: 308 KSKGRGQFSFFSEEMNRQAQERRTLETDLREALRRRQLQLHYQPQIDLSSGRLCGIEALA 367

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ GNI  S F+ +AEE  +   ++ + LE   R + +WR+     P+ + +N++ 
Sbjct: 368 RWFHPQLGNIPPSRFVPLAEECGLAGELDRWALEEACRQLAAWREAGL-EPVTVSVNLSP 426

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D EL   +  ++ +   +P+ + L  ++  + G    +   L  ++ +GI LT+DD
Sbjct: 427 LSIHDTELPARIADILRRHALAPAALNLEITQEALHGGNPGTLKTLHAVQAMGIGLTVDD 486

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L YL ++P   +K + S +          A+    + +  ++   + A+ +  
Sbjct: 487 FGTGQSCLGYLRHLPIRALKLDRSFVRDLEHDEATRALTEVAMHIGDSLRIAVFAEGVEN 546

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           E   + LT  G   +Q   ++ PL  + + + L  R+P
Sbjct: 547 EEQRRLLTNRGYQVVQGFLLSQPLSADQLSEWLARRWP 584


>gi|70731672|ref|YP_261414.1| sensory box protein [Pseudomonas fluorescens Pf-5]
 gi|68345971|gb|AAY93577.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 819

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 115/567 (20%), Positives = 235/567 (41%), Gaps = 15/567 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
           +     F+  +  + ER  + +   GD V   D+        P    +    +    G P
Sbjct: 230 LAQRHAFADALQLEKERAQITLQSIGDGVITTDVEGAIAYMNPAAEDLTRWKAEQAVGLP 289

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           +      +  N + +  T+++  +  +  G  ++   ++  D     + +   P+ N+ G
Sbjct: 290 LAALFNLLDENAQADGFTLIEHILSGQLSGGSEHSKLIQRLDGSTVSVTLVGAPIRNA-G 348

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   + + +D+T++++ +  +   A  D LTG+ NR+ F  RL   L         R  
Sbjct: 349 KVSGTVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEFRLEQALHSLIRQP-ARHA 407

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M +D+D++K +ND  G A GD++L  +   +   L+  D LARL G+ FGI+L +  + 
Sbjct: 408 LMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLREGDTLARLGGDEFGILLENC-SP 466

Query: 628 LKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                 A  +R+++         R    T SIG      +  T    L+ A++A Y AK 
Sbjct: 467 EAAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGLVHIAQTPTTLEASLRAADMACYMAKE 526

Query: 687 RGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEA 740
           +G N V+ +         R   +   + L +A+E +   L    I     ++     +E 
Sbjct: 527 KGRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYSQEITALGHVERGGGHVEI 586

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LIN 799
           L++        I    F+  AE   ++ +++ ++++ + + I     +    P+ +  IN
Sbjct: 587 LLRLHDEAGRMILPDSFIPAAERYGLMTSLDRWVVQNVFKIIAQCIAEGREGPMAMCAIN 646

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   + D+   + ++         P  I    +E+  + N   +   +  L+ +G   +
Sbjct: 647 LSGITIGDDAFLDFLREQFVVYGVPPKLICFEITETSAIANLGSAIRFINELKGLGCHFS 706

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDF    S  +YL ++P D +K +GS +          A++  I  +   +    IA+ 
Sbjct: 707 LDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEF 766

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPL 944
           +      + L  +G DY Q   +  P 
Sbjct: 767 VETPQIEQALLEIGVDYAQGYIIERPQ 793


>gi|238788481|ref|ZP_04632274.1| phosphodiesterase [Yersinia frederiksenii ATCC 33641]
 gi|238723394|gb|EEQ15041.1| phosphodiesterase [Yersinia frederiksenii ATCC 33641]
          Length = 864

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/441 (27%), Positives = 217/441 (49%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S + I   AF D+LTG+PNR  FL      + L+A   +    V+VI++D++K++N
Sbjct: 425 EREVSRKQIQHLAFYDSLTGLPNRSQFLIYAKKTIALAAEVGH-SLAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L S+ +R+   L   DI+ RLSG+ F IIL S     +       M   
Sbjct: 484 DSLGHAAGDELLASIAQRLRNELPKNDIIGRLSGDEFIIILSSCT-MQQATVKVEKMLSL 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +ASIG + +  +      ++ +A++AM+ AK+RG  H   F V   
Sbjct: 543 LSQPCMIANVNIIPSASIGISLYPENGEEMDTLMNHADIAMHKAKNRGHGHFNFFSVEMN 602

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++    +++ L  A     L L Y P + L D  + G+EAL +W HP  GNI    F+
Sbjct: 603 DINQQRQDMEDALRHAFHIGSLELFYQPQVMLKDGHLYGVEALSRWVHPILGNIPPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  + L+ +E     +  WR +    P  + +N++  +  +  L + +  ++
Sbjct: 663 PIAEESGLINELALWAIETACEQLADWRLRGIDVP-SVSVNLSPTNFHNPGLADMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 QHYHLPPQDLTLEITEDILIENNPAIFTTIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEHDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYQIGQ 841

Query: 937 DSHVASPLGFNSILKLLKERF 957
               +  L    + K L+ R 
Sbjct: 842 GFLFSEALPAIKLEKWLEHRL 862



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 78/227 (34%), Gaps = 32/227 (14%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +H  A+   +Q  +++      A+  S   + ++D+    +T   +     G     + G
Sbjct: 4   KHTAASQDVTQSEYNENSALLSALDRS-LAIIEFDLSSRIITVNQNYLDYFGYQRDEVIG 62

Query: 448 PIRNWLPYIHI-----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                L +         +    +  L +        L+  F     D    W+    +P+
Sbjct: 63  QHH--LMFCPPGYSTSEEYQTLKKRLSA-----GESLEGTFERLHKDGSTVWLAAIYQPV 115

Query: 503 SNSNGDILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
              +G + R + IA DIT   EQ+K+ +  +       LT +       DR  + + ++A
Sbjct: 116 PGPDGSLTRMVKIAKDITFLIEQQKTTQEWVQL-----LTQL------TDRSDSAMFIAA 164

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
              + +  V  I+   + K+    G      +  ++   +       
Sbjct: 165 NSSHGQQAV-YIN-QGFTKL---FGYTPEQALGQNMVDLLQSAHPEQ 206



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G    + L   H        +        R+  L  E    
Sbjct: 173 VYINQGFTKLFGYTPEQALGQNMVDLLQSAHPEQLALIDSS---ATDVRQQLLPKEL-FY 228

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + D Q HW    I  + N  G+    IG+  DIT  K   
Sbjct: 229 SKDRQPHWCSAVINSLVNEQGEQSYSIGVLTDITLTKMYE 268


>gi|117928627|ref|YP_873178.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117649090|gb|ABK53192.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 636

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 114/438 (26%), Positives = 220/438 (50%), Gaps = 6/438 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +  ++++       A  D LTG+ NR +F  R+   +  +         V+++DID +K+
Sbjct: 193 VHARRRAETARYHLASHDALTGLVNRTTFAARVADAVGQAER-GRGHLCVLMVDIDGFKR 251

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L  + +R+  +++  D +AR+ G+ FG+++       +    A+ +R
Sbjct: 252 VNDSLGHLHGDRLLRDIAQRMTAIVRPTDTVARIGGDEFGVLVTGLAAPNEAEAIALRLR 311

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
            +   P  +  R + ++ASIG A+  S  I  +E+L +A+LAM  AK+ G      FR  
Sbjct: 312 DAFRTPFAVDGRSVHLSASIGVATSASRGIEPAELLADADLAMTEAKNTGKGRCVVFRPA 371

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                + R+ ++EDL  AVE     L + PI+ L     VG EAL++W HP  G +   +
Sbjct: 372 LRRAAAQRIALEEDLRAAVEAGAFRLDFQPIVELATGMWVGAEALLRWPHPTRGLVPPLD 431

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQ 815
           F+ +AE+  ++  +  ++L    +  ++W           + +N++ + L +    + + 
Sbjct: 432 FIPLAEDSGLVVPLGEWVLRTALQHRVAWTPRLHCRQDFCVSVNVSVRQLAEPGFVDVVT 491

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++ +   P  + L  +ESV +     +  +L  LR +G+ + LDDFGT  S LSYL  
Sbjct: 492 DALAASGVPPEVLVLEMTESVFIDEEAGTLAVLRALRDLGVRIALDDFGTGYSALSYLRR 551

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K + S + G   T +  A+ R++I +A+ ++  ++A+ I     ++ L ++GC 
Sbjct: 552 FPVDILKLDRSFIAGLLGTAQDQAVTRAVIGLAQQLDLDLVAEGIETYDQLEILRQLGCR 611

Query: 934 YIQDSHVASPLGFNSILK 951
             Q   +  P+  +++  
Sbjct: 612 LGQGFLLQKPMPADTLPA 629



 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 11/127 (8%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +  + +   R           +   D+           A ++G+ + ++ G       +
Sbjct: 1   MTADLHAIEARFGETYRRVAIGMALLDVAGRFRAVNDAFAELVGVEADALIGSEET--TF 58

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I  +DR      +           + + R+  AD     +   IR ++ +  +    +G 
Sbjct: 59  IRPDDRHWADWGI------GGEPQRLQVRMCRADGTEIHV---IRILTAAADEEPFVLGH 109

Query: 516 ANDITEQ 522
             D+TE 
Sbjct: 110 YIDVTEH 116


>gi|260596116|ref|YP_003208687.1| signaling protein [Cronobacter turicensis z3032]
 gi|260215293|emb|CBA27231.1| Uncharacterized signaling protein PA1727 [Cronobacter turicensis
           z3032]
          Length = 690

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/442 (29%), Positives = 224/442 (50%), Gaps = 7/442 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +  +++ R T+M +D+D +K +ND  
Sbjct: 252 EANKELAQLALHDTLTRLPNRILLEDRLDQAISKADREES-RFTLMFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV++T R+ E LK    LAR+ G+ F  +L   +     A  A A+  +   
Sbjct: 311 GHNTGDRLLVAVTERLKEQLKGQFTLARIGGDEFV-LLAETDQPNDAAGLANALVHAFDT 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT SIG A +      S E+L NA+ AMYH KH G N    F+  +++  
Sbjct: 370 PFTIQPYEVVVTISIGIAFYPHDGKNSRELLFNADAAMYHTKHTGRNGYSFFQPSMNTQA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA E  EL LVY P  +     +VG EAL++W HP++G +S   F+ +A
Sbjct: 430 QTQLQLMNDLWLARERKELRLVYQPKFQAPSGPVVGFEALLRWQHPQYGLLSPDAFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  MI  I  ++L+   R +  W   A      + +N+++       L E +   + + 
Sbjct: 490 EKTGMIINIGEWVLDEACRQLNEWH-LAGHTAWSVAVNLSTMQFEQPGLVEMVMGCLERH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++ L  +E+  M NP+ S  LL RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 QIAPEKLILEVTETTAMSNPDESVRLLTRLTELGVKASIDDFGTGYSSLLYLKRLPASEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +   I+ +I+ +AK +   ++A+ +      + LT +GC+ +Q   
Sbjct: 609 KIDRAFVNELRAEGEDATIVSAIVALAKTLNLRVVAEGVETVEQQQFLTELGCNTLQGYL 668

Query: 940 VASPLGFNSILKLLKERFPLVK 961
           +  PL    I +  +   PL +
Sbjct: 669 LGKPLPPEVITREGENLAPLSR 690


>gi|296104979|ref|YP_003615125.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059438|gb|ADF64176.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 693

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 212/436 (48%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A QD LT +PNR    DRL   ++ +   +     +M +D+D +K +ND  
Sbjct: 252 EANRELAQLALQDTLTRLPNRILLEDRLDQAINKADR-EGTHFALMFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +LV++T+R+   LK    LAR+ G+ F  +L         A  A A+ ++I  
Sbjct: 311 GHDVGDKLLVAVTQRLLLPLKGQYTLARIGGDEFV-LLAEVGGPDDAASLANALVRTIDS 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P N+   ++ VT SIG A +     T  E++ NA+ AMYH KH G N    F+ S     
Sbjct: 370 PFNVDPYKLVVTLSIGIALYPHDGKTDRELMFNADAAMYHTKHMGRNGYHFFQPSMNTLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +  DL LA++ +EL L Y P        ++G EAL++W HPK G ++   F+ +A
Sbjct: 430 QTHLQLMNDLWLAIDRNELQLHYQPKFHAPAGPVLGFEALLRWQHPKLGLLTPDLFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  I  +++    R +  W          + +N+++       L   +   +++ 
Sbjct: 490 EKTGQIIPIGNWVINEACRQLREWH-LKGHQNWSMAVNLSTLQFEQPSLVSTVLDCLTRH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M NP+ S  +L  L   G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 QVPPEMLILEVTETTAMSNPDESVRVLTELTNAGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +   K   I+ +I+ +AK +   ++A+ +  E     LT +GC+ +Q   
Sbjct: 609 KIDRAFVKELSGESKDATIVSAIVALAKTLNLKVVAEGVETEAQQAFLTELGCNTLQGYL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P+   +I  L ++
Sbjct: 669 LGKPVSAQTIETLCEQ 684


>gi|170733711|ref|YP_001765658.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
 gi|169816953|gb|ACA91536.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia
           MC0-3]
          Length = 790

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 339 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 397 NAGDIVLQMTASRLADAVGDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 456

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 457 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 516

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 517 LMRWEQQLRVALAEGQLFLAYQPKIDLAHRTITGFEALARWDHPEHGVISANEFISIAES 576

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + +NI+       +L E +   +  T  
Sbjct: 577 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAVNISPVQFWRGDLIETISQALQDTGI 635

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 636 PANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 695

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 696 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQITWLSALGEIEAQGFLFS 755

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 756 RPVPADAIPALIAR 769


>gi|77460307|ref|YP_349814.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas fluorescens Pf0-1]
 gi|77384310|gb|ABA75823.1| putative GGDEF/EAL domain signalling-related membrane protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 820

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/597 (19%), Positives = 244/597 (40%), Gaps = 16/597 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R+   ++    +   + +++L      + +     F++ +  + +R  + +   GD V  
Sbjct: 201 RMILRLLLFTNLATALGLIVLALLRTRKLLKQRHAFAEALQLEKDRAHVTLHSIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+        P    +    +    G P+      +  N +    T+++  +  +  G 
Sbjct: 261 TDVSGAIDYMNPAAEALTHWKAEQASGLPLAALFNLLDDNAQTEGLTLIEHILSGQLTGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            ++   ++  D     + +   P+ N+ G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SEHSKLIQRLDGSTVSVTLVGAPIRNA-GKVSGAVLVLHDMTQERQYIANLSWQATHDAL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR+ F  RL   L         R  +M +D+D++K +ND  G A GD++L  +   
Sbjct: 380 TGLANRREFEYRLEQALHNLTRQAG-RHALMFLDLDQFKLVNDTCGHAAGDELLRHICAL 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           +   L+  D LARL G+ FGI+L +          A ++R+++         R    T S
Sbjct: 439 LQSGLREGDTLARLGGDEFGILLENCA-PEAAEKIAESLRQTVQNLHFVWKGRPFLTTVS 497

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCL 713
           IG      +  T    L+ A++A Y AK +G N V+ +         R   +   + L +
Sbjct: 498 IGLVHVAQNPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMAWVQRLHM 557

Query: 714 AVENSELYLVYH---PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           A+E +   L      P+          +E L++        I    F+  AE   ++ ++
Sbjct: 558 ALEENRFCLYAQEIAPLGSAAGGTRGHIEILLRLHDEAGRMILPDSFIPAAERYGLMTSL 617

Query: 771 NLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           + ++++ + + I    +     P+ +  IN++   + D+     ++         P  I 
Sbjct: 618 DRWVVQNVFKVIAQCINDKCEGPLAMCAINLSGITIGDDAFLHFLREQFDNYGVPPEMIC 677

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + N   +   +  L+ +G   +LDDF    S  +YL ++P D +K +GS + 
Sbjct: 678 FEITETSAIANLGSAIRFINELKGLGCYFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVK 737

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                    A++  I  +   +    IA+ +      + L  +G DY Q   V  P 
Sbjct: 738 DMLDDPINRAMVEVINHIGHVMGKQTIAEFVETAQIEQALLEIGVDYAQGYVVERPQ 794


>gi|320334267|ref|YP_004170978.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319755556|gb|ADV67313.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 802

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 216/435 (49%), Gaps = 7/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + S   +   A  D LTG+PNR  F DR+   +  +A +   R  VM ID+D +K +N
Sbjct: 371 ELEASQARLAHQAQHDVLTGLPNRALFQDRVERGIASAAREGG-RLAVMFIDLDGFKAVN 429

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L  +  R+ + ++  D +ARL G+ F ++L+  N +   A  A  + ++
Sbjct: 430 DTLGHAAGDELLREVASRLQDNVRRNDTVARLGGDEFTVMLLGVNTAQDAASVAQKILRA 489

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI+L +    V+ SIG + +      ++++ ++A++AMY AK  G N++  +     
Sbjct: 490 LREPIHLADGAAHVSGSIGVSLYPQDGADATDLQRHADIAMYRAKQGGKNNITFYAPEMN 549

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             D     +++ L  A++  EL L Y P+       +VG+EAL++W +   GN+  + F+
Sbjct: 550 AVDAARSAVEQHLRGALDRHELTLAYQPLHNAQ-GLVVGVEALLRWQNAALGNVPPTTFI 608

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I  ++L    R + +WR         + +N++       +  + ++  +
Sbjct: 609 PVAEDTGLIIPIGQYVLNEACRQLAAWRAHGTAVD-RMSVNVSPAQFAREDFVDIVRRAL 667

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                    ++L  +E +++ +       +  LR +G+ L++DDFG   S L+YL  +P 
Sbjct: 668 QHHRLDGRDLELELTERLIIRDVPGVSRKMSELRALGVRLSIDDFGAGNSALNYLMTLPV 727

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + + +           I+++I+ +   +   ++A+ +     + ++  +GC+  Q
Sbjct: 728 NTLKVDRAFVQALDQTPGAHRIVQAIVALGHALGLDVVAEGVETPAQLLQVRELGCERTQ 787

Query: 937 DSHVASPLGFNSILK 951
              +  P+   +I  
Sbjct: 788 GFLLGQPVPPENIRA 802


>gi|117924311|ref|YP_864928.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117608067|gb|ABK43522.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 555

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 139/547 (25%), Positives = 241/547 (44%), Gaps = 11/547 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +    D +   +     +        +LG    +       +   I    R+ +   
Sbjct: 8   QHLLHHLADGIIIHEQDM-ILYANEIARIMLGTEIHTDLTQSL-FSLRIDPTCREAWLHN 65

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +           + ++      F  +     P     G+    +    DI+E+K+  E
Sbjct: 66  GANHSHEADRVKLVDLKLLPEAKPFTHVEALTIPF---QGNERLLVTTLRDISEKKRQEE 122

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A  D LTG+PNR  FLDRL   L  +   D +R  VM ID+D++K +ND LG A 
Sbjct: 123 RIRHQANYDALTGLPNRGLFLDRLKLELARAKRTD-VRVAVMFIDLDRFKWVNDTLGHAA 181

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GDD+L   ++R+    +  D +AR+ G+ F +IL            A  + + +A P  L
Sbjct: 182 GDDLLREASKRLLSCHRQSDTVARMGGDEFTVILPDMARGPHAERVAAQILEQLAAPFTL 241

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
             +E+T++ S+G   +        ++LKNA+ AMY AK +G N    +          R+
Sbjct: 242 EGQEVTISGSVGVTIFPDDADNLDDLLKNADTAMYRAKSQGRNAYRFYTPDMHAEAMARM 301

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ +L  AVE+ EL L Y PI+ L    I G EAL++W+HP  G +S   F+ IAEE+ 
Sbjct: 302 ALERELSSAVEDQELALCYQPIVDLNTNRIAGAEALLRWNHPTLGAVSPEVFIPIAEEMG 361

Query: 766 MIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYS 824
           +I  I  + +         WR Q       FI +N+      +    + + +++++T   
Sbjct: 362 LIAQITEWAVREACTQACQWRSQYGTAKDFFISVNLTCTRCRELSTDDKIPSILAETQLP 421

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + L  +E+++  +P ++  +L  L++IG+ L LDDFGT  S LS L  +P   VK +
Sbjct: 422 PHALVLEVTETILGEDPPKAMAMLNHLKQIGVRLWLDDFGTGSSSLSVLRNLPVCGVKID 481

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +    + ++   ++ +II M +++   +I + +  E     L   G    Q      
Sbjct: 482 RTFVPDALNDKEAEVLVTTIINMGRSLNRILIGEGVETEAQRLYLEGKGVQLAQGYFFGK 541

Query: 943 PLGFNSI 949
           P      
Sbjct: 542 PCSAAEF 548


>gi|77918277|ref|YP_356092.1| putative sensory box/response regulator [Pelobacter carbinolicus
           DSM 2380]
 gi|77544360|gb|ABA87922.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 717

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 133/567 (23%), Positives = 248/567 (43%), Gaps = 19/567 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRDNFR 465
           + +A   +G +V   D        +P+   + G  S   +   IR+ +P  H    D   
Sbjct: 132 RQMATQTNGAMVMFCD-SGRVCHWSPEAEALFGYRSKDILRRDIRSAIPLCH----DLAA 186

Query: 466 TILDSFVGYRRGRLQY-----EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                  G+            E   R  D     + + +     +       IG+  D  
Sbjct: 187 PQTTEISGHPPPCPDLALDPREVTCRCKDGTQVTVDLSLASF--ATHKRRYTIGLCYDRQ 244

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                   I   A+ D LT +PNR    +RL   L  +    +    V+ +D+D++K++N
Sbjct: 245 RHTAQDRHIQQLAYYDPLTELPNRVLLQERLDQSLAEALRSHHP-LAVLFVDLDRFKQVN 303

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A+GD +L  + +R+ + L+  D +ARL G+ F I+L    +   +      +  +
Sbjct: 304 DSLGHAIGDQLLKMVGQRLQQCLRSNDTVARLGGDEFIIVLSGFRHPSSLPKILDKIFDA 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I VTASIG A        +  +++NA++AMY AK   GN  + F     
Sbjct: 364 LSKPYRIEMHRIVVTASIGVAVCPDDGTAADLLMRNADIAMYVAKEERGNSYQLFCQEMN 423

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   D++ ++ +L  AV+N E +L++ P   L  E++V +E  ++W       +S   F+
Sbjct: 424 QALKDQLALETNLRQAVDNGEFFLLFQPRFHLASEKVVSIECFLRWKRSDGNILSPKAFL 483

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              EE+ ++ ++   +L +      S +    MP I + IN++        L E +  ++
Sbjct: 484 PRLEEMGLMASLGNRILRKACAFGASLQQA-GMPHIPVAINLSCSQFRQRNLHESIATIL 542

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T    + ++L  +E  +  N ER+  +L  ++++G+S +LD+FG   + L  L  +PF
Sbjct: 543 QETGLPANCLELEINECTLQKNEERAEEILRSIKRLGVSWSLDNFGLGYTSLQRLKTLPF 602

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +     T+   A++ +I+ MA+N+    IA+ I        L  MGC Y Q
Sbjct: 603 DNLKIDRHFIRNLPETQTDAAMVGAILAMARNLGLVTIAEGIETFAQHHLLLAMGCHYGQ 662

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
                 P     +   L+     ++  
Sbjct: 663 GFLFREPCRPGELQTFLQAEISPLQPA 689


>gi|119468104|ref|ZP_01611230.1| putative orphan protein ; putative sensory-box domain
           [Alteromonadales bacterium TW-7]
 gi|119448097|gb|EAW29361.1| putative orphan protein ; putative sensory-box domain
           [Alteromonadales bacterium TW-7]
          Length = 838

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/564 (21%), Positives = 246/564 (43%), Gaps = 20/564 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIH 457
            +FS  +R  L +     +V + D +       P   T+ G     S+   +  +     
Sbjct: 278 ELFSAHQRILLHL---NTVVLELDQLGKIRFINPAWETLSGFGVKTSLQKSLTQFYTG-- 332

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              +   +  +D  +G      Q E +++  +    W+  R++ + N   +    +   +
Sbjct: 333 -ECQIKLKATIDDILGGGNDHQQIEIKLQHKNGGQIWVECRLQLIKNRRNNATITV-TID 390

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +I E+K++   +   A  D LTG+ NR  F   L+ I     T  ++   ++ ID+D +K
Sbjct: 391 NIHERKQAELQLRHLALHDPLTGLHNRYHFDQELSRICKPKHTHSDVEHALIYIDLDHFK 450

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G   GD VL  + +   + ++   ++ R+ G+ F +IL + N            
Sbjct: 451 IINDSQGHHQGDLVLKDVAQLFKDNIEKEHLVCRIGGDEFAVILKNMNLLDAHLIAEGVC 510

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                      E+  T++ SIG    T +    +E LK A++A+Y AK+ G N V  +  
Sbjct: 511 SAIEQHTFKSNEQSYTISCSIGLTQITVNNNDPNECLKQADIALYIAKNLGRNLVHCYSK 570

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               ++ +        ++  A++ + + L Y PI     E++   EAL++  H +   I 
Sbjct: 571 EDAHNNTLQTGLEWGHEIRQALQQNNIELHYQPIWDFKAEKVAYFEALLRLKH-EGTLIY 629

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+   E L     ++  ++      +  +   +      + IN++++  LD  L   
Sbjct: 630 PNQFIPSLEMLNDTFLMDQCVIRNAIASVAKYPQLS-----QVAINLSAQSFLDERLLPL 684

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +++ + K     +RI    +ES  + N + +R ++ +L  +G   ++DDFGT  S  SYL
Sbjct: 685 IESNLEKYNVPATRIIFEITESASINNIQATRKMIDKLNSLGCHFSIDDFGTGFSTFSYL 744

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   VK +GS +         +A++++I  ++++++   +A+ +  +     L  +G
Sbjct: 745 KQLPAQHVKIDGSFVRDMLNDPIDLALVKAINDISRSLDKYSVAEYVENKELFTTLRDIG 804

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
            DY Q   +A P+    I   L++
Sbjct: 805 VDYGQGYFIARPVPVEKINDELEK 828


>gi|91782555|ref|YP_557761.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91686509|gb|ABE29709.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
          Length = 617

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 126/584 (21%), Positives = 251/584 (42%), Gaps = 18/584 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 H        Q       R +  A+  +   ++         +       + G A
Sbjct: 35  SIASTTHEYQKAGAMQDHLYAAARPRDAALASAPCGMFICRADGTFDSVNAAFEKLTGFA 94

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  + G  R +   +   +    R  L   +     R + E+     +     +++ + P
Sbjct: 95  AEELIGR-RTFESLLDPAELARRRAELPQ-LEMVTSRYESEWSFLRRNGTPIRVVLALAP 152

Query: 502 MSNSNGDILR-------YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +                Y+G+A D+T   +S   +   A  D +T +PN+  F +RL   
Sbjct: 153 LVAGPAHAGGAGAGPACYVGMAFDMTRYAQSEARLWYVAHHDGVTRLPNQTLFTERLELT 212

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +     + +   TV++ ++D  +K+ D LG+   + VL  +  R+  L      +A + G
Sbjct: 213 IARCQRNGSG-FTVLIAELDHLRKLRDALGLHAAELVLQIVGERLRGLFPNDGTIASIGG 271

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            +F +++     +          R  IA  I+     + +TASIG  ++ +    +  ++
Sbjct: 272 TQFALLVNETGAAADAFAAEALAR--IAEAIDYAGTALNITASIGIVAYPADGGDAPTLM 329

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A +A+  A    GN V  F        + R  ++  L  A+E  +L+LVY P + L  
Sbjct: 330 RRAGVALSAASAVTGNAVRRFSAALEGQAARRFELETMLREAIERQQLHLVYQPQVTLST 389

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I  +E L++W+HP+ G IS  EF+ +AEE  +I+ I  +++    RD           
Sbjct: 390 GRIAQVETLLRWNHPQRGLISPVEFVPVAEEAGLIEQIGEWVIRTACRDAGKLLRLTGTL 449

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P F  +N++ +      L E ++  + +    PS +++  +E V++G+ E++   L  LR
Sbjct: 450 PRF-AVNVSPQQFQRQNLFETIREALDEAALDPSYLEVEITEGVLLGDTEQALQTLFALR 508

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + +DDFGT  S L+YL   P + +K + S +   +      A++ +II MA  ++
Sbjct: 509 ELGVEVAVDDFGTGYSSLAYLTRFPLNRLKIDRSFVMRMSTDSQCEALVGAIIAMAHALK 568

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + + A+ +       +L  +GCD  Q    + P+   ++  LL+
Sbjct: 569 SRVTAEGVETAEQAAQLEALGCDEAQGFWFSRPITVGALRNLLR 612


>gi|71908401|ref|YP_285988.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71848022|gb|AAZ47518.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 715

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 141/634 (22%), Positives = 265/634 (41%), Gaps = 31/634 (4%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           + + M         I +    G    I   +   ++ H +     S   F D     L +
Sbjct: 82  LPIIMLTALDDQASIDEAYRCGATDFITKPLNIPLLPHRVRYLLRSSIAFKDLVDSQLTL 141

Query: 412 ----LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
                 +    W  D   +    +     I  +A+  +    +  L  +H  DR      
Sbjct: 142 IHTQQIAHLGNWTMDHEGNISAASRQYLDI--IAAAQLPVSEKRLLARVHREDRSALMRC 199

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                  R  ++ Y  R  A +N +H +  R  P+ +         G   DI+E+    E
Sbjct: 200 WAELRAGRPYQIDYRLRSLANENLWHHVHERGFPIFDEKNHYQGASGFTQDISERVSQEE 259

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A+ D +TG+ NR   ++ L   L   A D+     ++ I +   + +  VLG   
Sbjct: 260 KIRQLAWHDPVTGLNNRDRLIELLERDLQ--ADDNKTGVVILYIHLSNLRDVATVLGQET 317

Query: 588 GDDVLVSLTRRIGELL--------------KFPDILARLSGNRFGIILISENNSLKIADF 633
            D  + +L  RI  LL                   LAR     F + L    +  +I  +
Sbjct: 318 SDAAIRTLASRIKGLLKTPPQCNCPADREYMQDAKLARYDEQSFVLALPGVLDREEIYCY 377

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL-AMYHAKHRGGNHV 692
           A A+ ++I+ P+ LL  E+ +T  IG A +      ++E+ + A L A+  A + G    
Sbjct: 378 ANAVNETISQPMLLLGDEVLITPFIGIAYYPEDASDTAELFRRAMLVALRAASNNGTVVS 437

Query: 693 ESFR-VSSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
              +      + R++++  L  A++   +L   + P I     EI+G E L++W HP  G
Sbjct: 438 FFDQKHDHEAAQRLVLERGLRAALDQGGQLRPYFQPKISAATGEIIGAEVLLRWQHPLLG 497

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+ +AEE+ +I  I+ +++ ++   I  W          I IN++++    + L
Sbjct: 498 FITPDRFIPLAEEVGLIHPISEWLISQVCELIADWLGMRQKVG-TISINLSAESFFQHSL 556

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  ++++T    S++ +  +ESV+M N + +  ++  LR+ GI ++LDDFGT  S L
Sbjct: 557 IQFIDEVLNRTGVPASQLIIELTESVLMQNADTAHQVINELRQRGIRISLDDFGTGFSSL 616

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL     D +K + S +    E  K+ A++++II +   +   ++A+ +        L 
Sbjct: 617 GYLNRFSIDEIKIDRSFVIDLEEQGKKRALVQAIITLGTALGLKVVAEGVETRQQADLLR 676

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            MGCD  Q    A P+  +  +     + P +++
Sbjct: 677 AMGCDIFQGFFFARPMPADEFIAF---QLPAIES 707


>gi|157963764|ref|YP_001503798.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157848764|gb|ABV89263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 714

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/611 (19%), Positives = 245/611 (40%), Gaps = 18/611 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD--GE 405
            +    L M+   +    ++         + V+++ F  +     +       F     E
Sbjct: 97  VVSLSWLHMSQQGKELPTVLTLYPAQLDNIKVMIVSFKPLDRRKRSRESISNGFETLPKE 156

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             S+ +  S + V+  D     +     +  I G ++  +             +D     
Sbjct: 157 LMSITLEDSAEAVYITDEDDRILAVNKAMCRICGYSAEHLLSKT--------PSDIKLEL 208

Query: 466 TILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              +         +G  Q E     +D          R +   N   + Y+ + +DI+E+
Sbjct: 209 QHQNQAPDNPLKGKGSWQGEVWKCRSDGSTFPAWQSCRRIYADN--TVFYVNLFSDISEK 266

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     +   A  D LTG+PNR   +  L   ++      +    +M +D++ +K IND 
Sbjct: 267 KALENKLTQQAMYDKLTGLPNRFHLIQLLNKAINNIKQSPDSIGALMFLDLNGFKNINDS 326

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G + GD VL  +  R+         +ARL G+ F ++L   ++  +I  F+  +     
Sbjct: 327 FGHSTGDKVLQLVAARLEACCIENAEIARLGGDEFTLVLPQCHSRQEIEAFSELILSLFE 386

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFR 701
            P  +  ++  +  SIG + +       +++L  A+ AMY AK+   +    +  +    
Sbjct: 387 APFEINGQKFYLGTSIGISLFPQQSDEPNQLLSMADTAMYSAKNSPKHIRFYNATIREAA 446

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++    DL  A    +  LVY  I+ L     V +EAL++W+      I + +F+ + 
Sbjct: 447 EKKLHTLNDLRHAQSLGQFSLVYQSIVDLESNRTVAIEALLRWNQSNGEVIEAHDFIPLL 506

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  ++  +  + LE+    ++ W+       + I +NI+   L   +    ++ L+++T
Sbjct: 507 EEAGLMVNVGQWALEQACIQMLKWQQDY-DSELKISVNISRSQLEHPDFISMLEGLLTRT 565

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S + +  +E+  +  P+    +L +L+++GI +T+DDFG   S LS L  +P D++
Sbjct: 566 CLPASALIIEITENAFIHRPKLMTKVLAQLKEMGICITIDDFGAGLSSLSRLSSLPIDSL 625

Query: 882 KFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +          +   + ++I+ +A+ +E   +A+ +  +     L  +G    Q    
Sbjct: 626 KIDAGFAQRLDCNQGRKLCKAIMQLAQTLEINFVAEGVETQAQRDMLLSLGKGMGQGYFY 685

Query: 941 ASPLGFNSILK 951
             P    +   
Sbjct: 686 NRPTAAENFTH 696


>gi|302871084|ref|YP_003839720.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573943|gb|ADL41734.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 549

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 216/438 (49%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E I   A+ D LTG+PN+  F+  L   +  S      +  +++IDID + KIN+ L
Sbjct: 115 KNQEKIKELAYFDQLTGLPNKNHFMLTLEKTIKESN-FKGQQFALILIDIDNFGKINNTL 173

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  + +++ E +     +ARL+G+ FGI++ S  +   +  F   +  S + 
Sbjct: 174 GHTTGDIVLKEIAQKLKESIGTNGFVARLTGDEFGIVVYSFPDLNILNYFIYKIFNSFST 233

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +++    +T S+G A + S    S+ +L NA+ A+  AK +G N    + +      
Sbjct: 234 SWEIMKYNFYITPSMGIAIYPSDGKDSTSLLTNADKALKLAKEKGKNTFCFYSLEMDNIL 293

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++   DL  A+E  +  L Y PI+ L   ++ G E LI+W HP+ G I    F+ IA
Sbjct: 294 QQRLEFESDLRKAIEEEQFILYYQPIVDLKKIQLCGAEGLIRWIHPQKGIIPPMSFIPIA 353

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ ++  D+ + R+  N    +I  N + ++       + +   I  +
Sbjct: 354 EQTGLITQIGKWVVTKVISDLKNIREVVNY-NFYISFNTSLREFSSANFIDDVLYTIETS 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + +  +ESV M +P+ +   L   ++ G+ + LDDFGT  S L+YL  +P D V
Sbjct: 413 NIDPAYLGIEITESVAMADPQNTIKSLKTFKEKGMKVLLDDFGTGYSSLNYLKELPIDVV 472

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    +      I +SII ++  +E  ++A+ I      + L    CD+ Q   
Sbjct: 473 KIDRSFIANMNKDIKEQKIAKSIIDLSHILELKVVAEGIEDSQQAEILKSFECDFGQGYL 532

Query: 940 VASPLGFNSILKLLKERF 957
              PL  +  ++ L +RF
Sbjct: 533 FGKPLPKDQFME-LAKRF 549


>gi|149926777|ref|ZP_01915037.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Limnobacter sp. MED105]
 gi|149824706|gb|EDM83922.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Limnobacter sp. MED105]
          Length = 798

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 142/605 (23%), Positives = 280/605 (46%), Gaps = 28/605 (4%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +    ++ +        +   ++LIG        +  +  + +    ER +  +   
Sbjct: 201 SFRLRNTFNDVVYFDWTAACIGADILLIG------RSSNIHLEEALLKSEERINNILESM 254

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D  +  D+           A +LG  +  + G +  W    H       +T L  +V  
Sbjct: 255 DDAFFAIDMNGYVNYLNEKGAELLGKTAPLLLGRM-VWERAPH-----LKKTPLFKYVNQ 308

Query: 475 RRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +G +Q E F+ +   N+  W  ++  P    + +++       DI+  K++   +   A
Sbjct: 309 AKGSMQPETFQWQDPANE-MWYQVKAYP----SDELISIF--FTDISSIKRNESRMRHQA 361

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR +    L  +L       + +  ++ ID+D +K +ND LG   GDD+L+
Sbjct: 362 THDPLTGLPNRLALSQTLQELLGN-DQVQDFKLGLLFIDLDGFKAVNDTLGHDRGDDLLI 420

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
           ++++R+  +++  DI+ARLSG+ F I L    +     +    +  +++  P  L E++I
Sbjct: 421 AVSKRLRSVVRSSDIVARLSGDEFVITLPYIADQDTAFNVGRKVVDAVSKKPFELGEKKI 480

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
            V AS+G A + +       +LK+A++AMY AK  G N V  F  +       +V ++ D
Sbjct: 481 YVGASVGVALFPTDATDVEGLLKHADIAMYQAKQAGKNTVRVFHANMSATLQTKVDLEND 540

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ +  + L Y P     +  I  +EAL +        I  ++F+ IAEE  +I  +
Sbjct: 541 LHDAILHDRIELHYQPRFS-ANGSICSVEALARMRSRTGELIPPAQFIPIAEETGLIIPM 599

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++ +  + +     + N  PI + +N++   LLD +LC  ++ ++  T   P  ++L
Sbjct: 600 GEQVMRKACKWLKDTNKKLNN-PISVSVNVSGIQLLDGKLCSTVEKVLKLTGLPPKLLEL 658

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V+M N E     L RL ++G+SL++DDFGT  S L+ L  +P  ++K + S ++ 
Sbjct: 659 ELTETVLMQNQETVLHDLNRLHELGVSLSIDDFGTGYSSLATLHRMPVQSIKLDRSFVSN 718

Query: 891 STEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              K  +++  R+++ MA+ +   ++A+ +        L   G   +Q   +A P+  + 
Sbjct: 719 LPNKADSVILSRTVLAMAQALGLGVVAEGVETAEQRDFLIESGVLELQGFGLARPMTADD 778

Query: 949 ILKLL 953
             + +
Sbjct: 779 SRQFV 783


>gi|218440595|ref|YP_002378924.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece
           sp. PCC 7424]
 gi|218173323|gb|ACK72056.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Cyanothece
           sp. PCC 7424]
          Length = 1262

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 232/448 (51%), Gaps = 9/448 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q++    I   A  D +T +PN   F  RL+  L  +    N+   V+++D++++K+IND
Sbjct: 403 QQRLTRLIRHQASYDVITQLPNGIIFNHRLSLALVDAVNQGNM-LGVVILDLNQFKRIND 461

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAIAM 637
            LG  VGD +L  +  R+   L    I    LAR  G RF I+L   + S +       +
Sbjct: 462 SLGHGVGDFLLTKVRDRLQNALDTYSIFNPLLARWHGARFIILLSKLSYSDESVMVCQKL 521

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                 P  +  + I + AS+G A       T+  +LKNAE AMY AK +G N  + +R 
Sbjct: 522 LNDFQEPFYVQSQAIYLGASLGIALAPYDGDTAEILLKNAESAMYEAKKQGKNTYQIYRP 581

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            S    ++++++ DL  A+E +E  L Y P I L   +++G+EALI+W HP  G +S + 
Sbjct: 582 GSDHDKNKLILEADLRKAIERNEFVLHYQPQIDLNTRKLIGVEALIRWQHPSLGMVSPAL 641

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  ++L         W+     P I + +N+++  L  +++   +  
Sbjct: 642 FIPLAEETGLICPLGEWVLRTACHQYRIWQKA-GFPKIQMAVNLSAFQLQQDDIVARIAM 700

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T  +PS ++L  +E+ VM N E+   +L +L+++GI + +DDFGT  S L+ L ++
Sbjct: 701 ILKETGMTPSDLELEITETTVMENLEQMTAILEQLKQMGIKIAIDDFGTGYSSLNVLKHL 760

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P DT+K + S +           + + II + K  E  ++A+ +     ++ L  + CD 
Sbjct: 761 PVDTLKIDKSFVQDITLDSNDAKLCQGIIMLGKAFELDVLAEGVETFTQLEFLRSLNCDR 820

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
            Q   ++ PL  +++++LL +   L+ +
Sbjct: 821 AQGYLISRPLAPDALIELLLKAQTLIPS 848



 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 63/159 (39%), Gaps = 4/159 (2%)

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D LT + NR  F   L               ++++ D+D +K  ND  G   GD  L  +
Sbjct: 1099 DGLTQVANRHRFDMYLDQEWRRLMRSQQF-LSLILCDVDHFKGYNDTYGHLAGDQCLQQV 1157

Query: 596  TRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS--IAMPINLLEREI 652
             + I   + +  D++AR  G  F IIL        +       ++   + +P      + 
Sbjct: 1158 AQVIKNAVGRPADLVARYGGEEFAIILPDTPLRGALYVAEQIRQQVQYLTIPHPQSTHQW 1217

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               +S   +   S+ ++   ++  A+ A+Y AK  G N 
Sbjct: 1218 VTLSSGVASFIPSAALSPKALINAADEALYQAKANGRNQ 1256


>gi|260752501|ref|YP_003225394.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551864|gb|ACV74810.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 579

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 234/446 (52%), Gaps = 5/446 (1%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             Y+ +  D T+  +    +     +D+LTG+PNR  F   L  ++ L          V+
Sbjct: 129 TCYLMVPVDNTQAVELQSTMRMKILRDSLTGLPNRIGFSRLLDDVILLEK--GTASVAVI 186

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+ ++ +IN+ +G  VGD++LVS+ RR+  +L+  D L R+ G++F I+L   + +  
Sbjct: 187 AIDLIRFSRINESMGSVVGDELLVSVARRLTSVLRPGDRLGRIGGDQFDILLSLHHGTSD 246

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  ++  ++ P NL   ++ V  +IGF+        S ++L++A++A+  AK    
Sbjct: 247 VWHAARRIKALMSTPFNLANLKVKVNCAIGFSLMDDRIEVSEDLLRDAQIALKRAKETDH 306

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             V +   +S    R  ++ DL  A++N +L+LVY PI+   +++IVG EAL +W+H   
Sbjct: 307 VEVYNVGEASVLQKRFSLETDLRRAIDNGDLHLVYQPILSPYNKKIVGFEALARWNHETL 366

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDN 808
           G +S +EF+ +AEE  +I  +  + LE        W  QA    PI + +N+++  L+ +
Sbjct: 367 GPVSPAEFIPVAEESGLIVPLGRWALESSVHTQQQWDKQAGYTLPIRVSVNVSALQLMRD 426

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  +  +T  +  R+ L  +ES +M  PE+S  ++  + ++GI +++DDFGT  S
Sbjct: 427 NLTQLITDIKKQTGINGERLTLELTESALMRYPEQSISVINTMHELGIKISMDDFGTGYS 486

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   P D +K + S +T   E + AI   R+I  MA  +    I + I      K 
Sbjct: 487 SLSYLKTFPIDHLKIDRSFVTNLAEDKTAIAITRAITSMASTLSIKTIVEGIETPEQKKI 546

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           +  +GCDY Q  + + PL  +  +  
Sbjct: 547 IMDLGCDYAQGFYFSRPLPVDEAIAF 572


>gi|254515428|ref|ZP_05127489.1| putative sensory box-containing diguanylate cyclase [gamma
           proteobacterium NOR5-3]
 gi|219677671|gb|EED34036.1| putative sensory box-containing diguanylate cyclase [gamma
           proteobacterium NOR5-3]
          Length = 810

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 249/592 (42%), Gaps = 26/592 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     + A       +    ++  L        V      R     +P    + G    
Sbjct: 227 FGTHMDITALKEQEDEVKRSRDKMELIAASINAGVLSLGPDRQVEYLSPQFTKLFGYDIE 286

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY--------EFRVRAADNQFHWM 495
              G +  W+     +   + R  +   +     R +         E  +R        +
Sbjct: 287 D-TGDLTQWIDR--ASGNASSRKTMSMALSGDLVRPESAELLTNNREVAIRTKSGIVRAV 343

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           +  +  +      I   +   +DI+EQK+  + I   +  D LTG+PNR    +RL   +
Sbjct: 344 LFTVSKI----DQIT--VVTFSDISEQKRHEDLIHFRSQHDGLTGLPNRALLSERLEWAM 397

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +   D  +  V  +D+D +K+IND  G   GD VL +   R+   L+  D +ARL G+
Sbjct: 398 KQARRSD-WQICVAFLDLDGFKEINDTHGHKAGDAVLRATANRLKNALREVDTVARLGGD 456

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEML 674
            F +++   +     +     +   +   I    +E+ VTASIG   +     I   ++L
Sbjct: 457 EFALVMTELDTRESSSCLLERILHEVRQAIPYDGQELKVTASIGVTFFAQDSAIDGDQLL 516

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A+ AMY +K  G +   +F  +  ++ R      E++  A+   E  L Y P + +  
Sbjct: 517 RQADKAMYDSKLSGKDCFSTFDPAQEKNLRQINRNFEEISKALREGEFNLHYQPQVNMRT 576

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            ++VG+EAL++W          + F+ +  +  +   I  +++ R   D+  W    N+ 
Sbjct: 577 GKVVGMEALLRWKDKTGVEHPPASFLPLIRDHKLALEIGAWIISRAITDLDGWLSHGNL- 635

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            I + IN+  K L+D+   EG+Q  + K    +P+ I+L   E+ V+    +    +   
Sbjct: 636 -IPVSINVFPKQLVDDFFIEGIQRHLDKHPSVNPALIQLEIVETAVLDEMGKVTETMVAC 694

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           + +GI  +LDDFGT  S LS+L ++P   +K + + ++G    +  +AI++S I +AK  
Sbjct: 695 KSLGIRCSLDDFGTGFSTLSHLKHLPVSELKIDQTFVSGMLDNKDDLAIVQSTISLAKAF 754

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              ++A+ +        L  M CD  Q   +A P+    I + L +  P  +
Sbjct: 755 GHKVVAEGVATIEQGLLLLEMDCDVGQGYVIARPMPAEDIAEWLSQWSPPAE 806



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462
             R +  + G+    W+W+     V      A ++G     +      +W   +H ND +
Sbjct: 116 LRRMTSILDGTNAGTWEWNAQSGEVRVNERWANMIGYTVEELTPISRDSWSALVHPNDIE 175

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITE 521
                LD+ +       Q   R+R  D  + W+ IR   +    +G      G   DIT 
Sbjct: 176 KVSARLDAHLRQDTNHYQVSCRLRHKDGHWIWVRIRGTVLSWTPDGQAEWMFGTHMDITA 235

Query: 522 QKKSLEG 528
            K+  + 
Sbjct: 236 LKEQEDE 242


>gi|206560808|ref|YP_002231573.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
 gi|198036850|emb|CAR52750.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 790

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 215/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 339 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +  + P 
Sbjct: 397 NAGDIVLQMTASRLADAVDDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFSEPF 456

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 457 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 516

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 517 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGVISANEFISIAES 576

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + +NI+       +L E +   +  T  
Sbjct: 577 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAVNISPVQFWRGDLIETISQALQDTGI 635

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 636 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 695

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 696 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQITWLSALGEIEAQGFLFS 755

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 756 RPVPADAIPALIAR 769


>gi|190573375|ref|YP_001971220.1| putative transmembrane GGDEF EAL signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011297|emb|CAQ44910.1| putative transmembrane GGDEF EAL signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 685

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 116/432 (26%), Positives = 212/432 (49%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + ++  A  D LT +PNR    DR+   ++ +   +     VM  D+D +K +ND  
Sbjct: 254 HANDRLIQAALHDPLTQLPNRMLLQDRIEQAIEKARRRNQA-VAVMFCDLDGFKAVNDAY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++ +RIG LL+  D  ARL G+ F I+L   +        A  +  +   
Sbjct: 313 GHQLGDRLLVAVAQRIGGLLRPQDTFARLGGDEFVIVLA-IDVPDDAVVVAERIIAAAGE 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P  L   E+ V+AS+G A + +      E++ +A+ AMYH K  G N    F  S     
Sbjct: 372 PFLLDAAELQVSASLGIALYPADAGNERELMAHADAAMYHTKETGRNGYTFFTPSMQLSA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + ++ + +DL  A+   EL L Y P          G EAL++W HP+ G ++   F+ IA
Sbjct: 432 NRQLRLLQDLRKAIARDELVLHYQPKFPAAGAPATGAEALLRWQHPELGLLAPDVFIPIA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I  ++L+R    + +W D  +     + +N++        L + ++ ++ + 
Sbjct: 492 ERSGLILPIGDWVLDRACAQLRAWHDAGHSE-WSMAVNLSPLQFASPALLDSVREVLQRH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + L  +E+  M + + S  +L  L  +G+ + +DDFGT  S L YL  +P   +
Sbjct: 551 RIEPACLTLEITETTAMKDVDASLAILNDLTAMGVHIAIDDFGTGYSSLLYLKRMPATEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +      E+  AI+ SII + + ++  ++A+ +  +   + L+ +GCD +Q  H
Sbjct: 611 KIDRAFVHDLECNEEDAAIVSSIIALGRTLQLQVVAEGVETQAQREYLSELGCDQLQGYH 670

Query: 940 VASPLGFNSILK 951
           +  P+     L+
Sbjct: 671 LGRPMDAEEFLR 682


>gi|301384376|ref|ZP_07232794.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato Max13]
 gi|302061908|ref|ZP_07253449.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato K40]
 gi|302132336|ref|ZP_07258326.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 712

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 243/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D   +     P I
Sbjct: 122 VLKPKVQTLLEQQRNRRALQQLSMELESARAFNASVLANVAEGILVVDEAGNISFANPAI 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R A      
Sbjct: 182 CQLLNASVDQLRGTQVLDY-VIEPQVSSWLESGFYQHYRKADTYRVHDAILRTAQGSQLP 240

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 241 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 297

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 298 LLRNERADKY-LVVLFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGG 356

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +IT+ AS+G A++         +L
Sbjct: 357 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVNGVDITLGASVGIATFPDCGSNLDGLL 416

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 417 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVGD 476

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W      P
Sbjct: 477 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQAWSGVFA-P 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E  ++ N   S   L  L 
Sbjct: 536 DVVLSVCVSPTQFCMPNLASELKRAMDRFGLKPGQIEVEITEGSLVHNLTHSHKQLKLLH 595

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +    E R   A+ RSII +++N++
Sbjct: 596 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVESRREAAMARSIIDLSRNLD 655

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 656 MLVIAEGVETIEQYQWLADNGCQVMQGFLIAHPMVAEDALHF 697


>gi|240138244|ref|YP_002962716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           domains [Methylobacterium extorquens AM1]
 gi|240008213|gb|ACS39439.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           domains [Methylobacterium extorquens AM1]
          Length = 794

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/553 (23%), Positives = 249/553 (45%), Gaps = 26/553 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +R       + + +         V+     A ++GL   ++ G   +       +D  
Sbjct: 248 EADRLHSLANAAVEGLVVCTGDA-IVSANRSFAKLVGLPPSALAGAALS---AYLPDDAR 303

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                        +     E  +R AD     + I ++P+ +  G     + +  D+  +
Sbjct: 304 LALA--------GQPERPVEAELRQADGTLVPVEIIMQPV-DHAGRPHYAVAV-RDLRAR 353

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I   A  D LTG+ NR SF  RL   +  +A     +  V+ +D+D++K++ND+
Sbjct: 354 RQAERQIQFLAHHDALTGLANRASFGKRLDQEM-RAADAGGRKLAVLCLDLDRFKEVNDL 412

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L  + R +   L    ++ARL G+ F +++       +    A  + +++ 
Sbjct: 413 FGHAAGDAMLEGVARIVSAELDDTQMMARLGGDEFAVLMP-CGGPSEAGRLAERILEALR 471

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
                      +  SIG A +       + +L  A+ A+Y AK  G      F       
Sbjct: 472 SGRADAGGP-QIATSIGVALYPDDAQERAALLSYADTALYRAKSEGRGTYRFFEARMGVE 530

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R +++ DL  AV   E+ LVY P   +    ++G EAL++W HP+ G +S + F+ I
Sbjct: 531 VRERRLLEHDLRHAVARGEMQLVYQPQTDVGSGAVIGFEALLRWKHPERGYVSPALFIPI 590

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  I  ++L    R+  +W +     P+ I +N+++  +        +  ++ K
Sbjct: 591 AEESDAILQIGEWVLREACREAATWSN-----PLSIAVNVSAVQIHSPHFVGLVHEVLLK 645

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P R+++  +E+ ++ +P R+ L L +L+ +G+ + +DDFGT  S LS L   PFD 
Sbjct: 646 TGLAPGRLEVEVTETALISDPNRALLTLRQLKSLGLRIAMDDFGTGYSSLSNLRSFPFDK 705

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GS +    S E+  AI+RS++ + + +   ++A+ +  E ++  L    C   Q  
Sbjct: 706 IKIDGSFVRSVDSNEQTAAIVRSVLGLGRGLGLPVLAEGVETEAELGFLAAEQCHAAQGY 765

Query: 939 HVASPLGFNSILK 951
            +  P       +
Sbjct: 766 LMGRPSPIGQFAQ 778


>gi|238797366|ref|ZP_04640866.1| phosphodiesterase [Yersinia mollaretii ATCC 43969]
 gi|238718797|gb|EEQ10613.1| phosphodiesterase [Yersinia mollaretii ATCC 43969]
          Length = 864

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 216/440 (49%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++S + I   AF D+LTG+PNR  F       + L+    +    ++VI++D++K++N
Sbjct: 425 EREQSRKQIQHLAFYDSLTGLPNRSHFQVYAKQAIALATEMGHT-LALLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L S+ +R+   L   D++ RLSG+ F IIL       +       +   
Sbjct: 484 DSLGHAAGDELLSSIAQRLRNDLAKSDLIGRLSGDEFIIILAPCT-LQQATVKVEKILSL 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +ASIG + +  + +    ++ +A++A++ AK+ G  H   F     
Sbjct: 543 LSQPCQITNVNIIPSASIGISLYPENGLDMDTLMNHADIALHKAKNMGRGHFNFFSAEMN 602

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++    +++ L  A     L L Y P + L D  + G+EAL +W+HP  G+I    F+
Sbjct: 603 NLNQQRQDMEDALRHAFHIGSLELFYQPQVMLKDGHLYGVEALSRWNHPILGSIPPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  + L+ +E   + +  WR +    P  + +N++  +  +  L E +  ++
Sbjct: 663 PIAEECGLINELALWAIETACQQLADWRLRGIDIP-SVSVNLSPTNFHNPGLPEMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 QHHHLPPQDLTLEITEDILIENNPAIFATIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E    +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEYDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYQIGQ 841

Query: 937 DSHVASPLGFNSILKLLKER 956
               +  L    +   L+ R
Sbjct: 842 GFLFSEALPAIKLEHWLEHR 861



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 17/185 (9%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            +   A    +Q  +++      A+  S   + ++D+    +    +     G     + 
Sbjct: 3   AKKTAALQEATQSEYNENSALLTALDNS-LAIIEFDLSSRIIAVNQNYLDYFGYQRDEVI 61

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G     L + H N   +               L+  F     D    W+    +P+   +
Sbjct: 62  GQHH--LMFCHPNYATSEEYQTLKICLLAGESLEGRFERLHKDGSTVWLAAIYQPVPGPD 119

Query: 507 GDILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           G +   + IA DIT   E +K+ +  +       LT +       DR  + + ++A  D 
Sbjct: 120 GSVTHMVKIAKDITFLIEDQKATQEWVQL-----LTQL------TDRSDSAMFIAANSDL 168

Query: 564 LRPTV 568
            +  V
Sbjct: 169 GQQAV 173



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+ +  V        + G       G   N +  +          +  +    R+  L  
Sbjct: 167 DLGQQAVYINQGFTKLFGYTPEQAIGQ--NMVDLLQSEHHFQLTAMDATSTEPRQQLLPQ 224

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           E    + D+Q HW    I  + +  G     IG+  DIT  K   
Sbjct: 225 EL-FYSKDHQPHWCSAVINSLVDEQGKPSYSIGVLTDITLTKMYE 268


>gi|77747860|ref|NP_637325.2| hypothetical protein XCC1959 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|77761200|ref|YP_243301.2| hypothetical protein XC_2226 [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 838

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 132/587 (22%), Positives = 247/587 (42%), Gaps = 10/587 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            ++     +Q+V         I    E  +           + ++   R+  T +   I 
Sbjct: 249 ALVRVLGQLQNVTEQRQTDALIRWRTELLNRVSALGKIGGCEIEVDTRRMQWTEECYRIH 308

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL   ++   +   L     + RD F   L   V       Q E        Q  W+ + 
Sbjct: 309 GLRKENI--TLEQALSLYTQDSRDAFEAALLRIVDGGLPE-QLELCFYRNSGQRVWVQVL 365

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I       G   RY+ +  D++ ++++ E I   A  D LTG+PNR    ++    +  +
Sbjct: 366 IELDR-REGLPPRYVALFRDVSREREANERIELLAHYDRLTGLPNRFLLREQAENAIREA 424

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                +   +++ID+D +K IND  G A GD++L   + R+ + L+  D+  R S + F 
Sbjct: 425 HERGQV-MAMLLIDLDGFKSINDSFGHATGDNLLKLASSRLHQHLRNSDLFGRFSDDEFI 483

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L   +        A  +  ++  P+      + + ASIG A           +L+ A+
Sbjct: 484 VLLRDLSEPEDAGHVARKLISALGEPLRKDHVTLKLGASIGIALQGEGLSDFDSLLRAAD 543

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G N    +          R+ ++  L  A+E  E  LVY P++  + +   
Sbjct: 544 AAMYAAKDSGRNTFHYYSQDVLLRAQRRLELEHALHGALEREEFTLVYQPLVNTVGDTSP 603

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W+ P  G  S +EF+ IAEE   I  +  +++    R  + W          I
Sbjct: 604 AIEALMRWNRPGHGPCSPAEFIPIAEECGEIVRLGEWVIGEACRQAVVWDRAGLHFS-RI 662

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++  L +    E +  +     +SP+R++L  +ES ++ + +  R       + G+
Sbjct: 663 AVNVSAVQLRERGFAERVLEICRDNGWSPARLELELTESALIRDSDSLRRCFELFEQNGV 722

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L YL   P   +K + S + G         + ++I+ +   +   ++
Sbjct: 723 LLAVDDFGTGFSNLHYLNRFPVQRLKIDRSFVQGMLDDANTAEVTQAIVHLGHALGMQVV 782

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           A+ +    +   L + GCD IQ    + PL    + + L+E    ++
Sbjct: 783 AEGVETVQEDALLRQQGCDEIQGYFYSRPLSPRDMAQWLREAEAGMR 829



 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +   +   +      IH +D     
Sbjct: 18  RWEIGLDSADHGLWDWDIAADVVYRSERWTRMLGYSEQPLPNNLTALSGLIHPDDHAQVS 77

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   S+G  LR +G   D+   K 
Sbjct: 78  AAVQAHLDGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTSDGRPLRMVGTHTDVHHHKL 137

Query: 525 SLEGILCN 532
             + +   
Sbjct: 138 LEQQLREQ 145



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD ++D++  + D    LGLA   +H  +R+ L  
Sbjct: 138 LEQQLREQQAQLEEAQRIASMGSWGWDTLKDQLWVSQDFLQQLGLADLRLH-SVRDILRL 196

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +      + R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 197 LAGPSVAHLRSAWRK-IKHEGMPVHFELEINGRLGVNPHHLRVWAQPVFDGDGALVRVLG 255

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 256 QLQNVTEQRQTDALIRWR------TELLNR 279


>gi|24373770|ref|NP_717813.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24348153|gb|AAN55257.1|AE015663_7 sensory box protein [Shewanella oneidensis MR-1]
          Length = 752

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/684 (19%), Positives = 268/684 (39%), Gaps = 32/684 (4%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +L   + + P     +         +       Y G +     +   P W L   + +  
Sbjct: 72  VLTGAAPHLPDSYNQVIHGVEIGPEVGSCGTAAYTGQRVIVEDIEHHPYWALYKSFALVH 131

Query: 355 WMAITKRLDNDIIQPALVGGLVL------IVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
            +           Q  ++G   +         +   T+I         +       E Q 
Sbjct: 132 GLRACWSEPIKDTQGKVLGTFAMYYKEIKSPTVADLTLIAEAARLASLAIERSRSLEFQR 191

Query: 409 LAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNF 464
           LAV         +   +     +        ++ L    +       +      ++    
Sbjct: 192 LAVKIFDRLPLALVITNASHSVLYANDAFKLMVCLQPDDILAFNPEQFFS---PSEPHEI 248

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            ++ +     +    Q E      + +  ++ + +     S+   L +  + +D++E+KK
Sbjct: 249 ASLFNHLSEGK--MWQGELVGLRNNGETFYLDLTVTVFRESHSADLGFAWLFSDVSERKK 306

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + I   A  D+LTG+ NR +   ++  +++  +       + M++D+D +K++ND  G
Sbjct: 307 AAQLIKYQANNDSLTGLANRNALFRQIQELINADSLTPG--FSFMLMDLDNFKQVNDTYG 364

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +LV +  ++   L    + ARL G+ F I+L       +++  A  + K +   
Sbjct: 365 HDKGDVLLVQMVEQVKICLDPQAVFARLGGDEFAILLPGVVTQRELSQLADKINKQVYRR 424

Query: 645 INL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             L  ++ +  + SIG A +    +   ++L  A+ AMY +K  G N    F     ++ 
Sbjct: 425 YELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQQNA 484

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A+E +   L + PI+      IV  E L++W H +   IS  EF+ IA
Sbjct: 485 ERIANLHTLLKQALEQNAFELYFQPIVDATTGLIVRAEVLLRWQH-EGQFISPDEFIPIA 543

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL----LDNELCEGMQAL 817
           E   +I +I   + + + + I+  +      P+ + IN+++ +     L +E C+    +
Sbjct: 544 ENSGLIVSIGRCVRQAVMQTIVEMQALGW--PMSLAINVSTFEFWSHELQDEFCDSFTDI 601

Query: 818 ISKTLY---SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           I            I L  +ES++M        +L  LR  GI ++LDDFGT  S LSYL 
Sbjct: 602 IEGLGVEDFPYELITLEITESLLMKKHAHLIQVLNELRARGIKISLDDFGTGYSSLSYLA 661

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +    E     A++ +I+ ++  +   + A+ +  +  ++ +     
Sbjct: 662 NFPIDQIKIDKSFIDRLAEGERHLALIEAIVRLSHALNLRVTAEGVETQEQLQVMMDNHI 721

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             IQ      P+      +LL ++
Sbjct: 722 QEIQGYLFYKPIPKAVFFELLAKQ 745


>gi|91228277|ref|ZP_01262213.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           12G01]
 gi|269966870|ref|ZP_06180943.1| PAS domain S-box/GGDEF domain protein [Vibrio alginolyticus 40B]
 gi|91188154|gb|EAS74456.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           12G01]
 gi|269828537|gb|EEZ82798.1| PAS domain S-box/GGDEF domain protein [Vibrio alginolyticus 40B]
          Length = 679

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 140/581 (24%), Positives = 255/581 (43%), Gaps = 24/581 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIATI 437
           I                 + +     + +       D +   + DI    ++  P  A +
Sbjct: 106 IRFVVFHAVDTSEKQILVRSLEESESKFAKLTQLLPDGLLLIEDDI---VISANPASARL 162

Query: 438 LGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           LGL +   + G   + L +I  N +  F   L + +  +          R    +   + 
Sbjct: 163 LGLNSPHELLGEELSRL-FIDENSKKVFSHRLSTLISDK--PFVCLTSARCGFERKVQLH 219

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                +  S   I+    +  D  +  K        +   D+LT + NR  F  RL  ++
Sbjct: 220 ADSTAILGSESQII----LIQDADDAPKNLSSASNEDIHIDSLTKLYNRFGFTKRLEQLI 275

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                       V  +DID +K IND LG  +GD V+  ++ R+  LL    I+  L G+
Sbjct: 276 KK-----QTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRLLPNQAIIGHLGGD 330

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            FG+IL    N+      +  +   I  P +L      +  SIG   +      +  +L+
Sbjct: 331 EFGVILPEPENTRMAEILSDRIISLINQPFDLHHFSKRLACSIGSVRYPEDGQDARILLQ 390

Query: 676 NAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ + L + Y P +   D 
Sbjct: 391 NADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDF 450

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G EAL++W HP  G IS   F+ +AE   +I+ +   ++  +   +  W+ Q  + P
Sbjct: 451 SINGAEALVRWKHPVEGYISPGSFIPVAERAGLIEHLGRVVMRDVFNTVKRWKQQ-GILP 509

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + IN++ +   + +L + M+ L+  T   PS I    +ES VM + E +  +L  ++K
Sbjct: 510 GRVAINLSPEQFGNPQLIDFMEKLLRTTELDPSCITFELTESAVMSDSEHTLQMLNAIKK 569

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
           +G +L++DDFGT  S LSYL   P D +K + + +       K++ ++ +II + K+++ 
Sbjct: 570 LGFALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTLPKQVTVIENIINLGKSLDL 629

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           T++A+ +        L+ + C+ IQ  H   P   + I +L
Sbjct: 630 TVVAEGVETHQQATLLSNLQCNAIQGFHFYRPQPKHEIEEL 670


>gi|319780083|ref|YP_004139559.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165971|gb|ADV09509.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 770

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 144/745 (19%), Positives = 296/745 (39%), Gaps = 44/745 (5%)

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF---- 287
           +++  G L++   +             +   S +++ +F   ++ ++++     T+    
Sbjct: 26  LTLSIGILAQTFLIGLVWWKSGDPRYLLVAISMVLVGVFRMRNFRKYNSMPSPTTWEEAH 85

Query: 288 ------SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
                      +  L   +F    +  +       + V            + Y    ++ 
Sbjct: 86  KRENDYILYGSLHGLTLGAFCLLGIYFARDGFAEIASVCLTLATATSIAGRNYGSPRMVT 145

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +   W I L   +   + + ++   L    +  +     TV   + A     +   
Sbjct: 146 I-LTIALTWPISLGFLLRGDIYH-VLLGLLSAPFLFAIRKFANTVRDVLFAAVSEEKKAN 203

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL------- 453
              +R + A+      +              + A ++ L +  ++ G   + L       
Sbjct: 204 RIAQRFNRALNTMSHGLVMLGPDGRVAVANAEAAHLMSLKSPDALLGRSIHGLLMRGVAG 263

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +   D       L   +   R R      V  A+ Q +    R        G     +
Sbjct: 264 GMLAPKDCRYIEAQLTRALREGRDRKVL---VSLANGQHYEFSAR-------EGSQELGV 313

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D+T + ++ + I   A  DNLTG+PNR  F + +   +     D      V+  D+
Sbjct: 314 ITFEDVTARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGDRDRLCGLAVL--DL 371

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND LG  +GD ++ ++  R+G + K    ++R  G+ F I      +   +   
Sbjct: 372 DDFKSVNDTLGHPIGDGLIYAVAERLGAIAKQDITVSRFGGDEFMIFFDRVEDESHLTSQ 431

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +   +   +++    + + AS G             M+  A+LA+Y AK  G N   
Sbjct: 432 LDEIFAGLQGEVDVAGHGLRIQASGGAVLSRVKDTDVDAMIVKADLALYKAKELGKNSWR 491

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  S   + R    +K DL  AVE   L +VY PI+ +    I   EAL +WDHP  G 
Sbjct: 492 LFEASMDAAFRNRQLMKADLRTAVEGKSLRVVYQPIVAMSTMRIASCEALCRWDHPDLGP 551

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS S F+ +AEE+ +I  I+ F+L+    +   W DQ       + +N+++KD    ++ 
Sbjct: 552 ISPSIFIPLAEEMGIISEISTFVLQAACAECAKWPDQT-----SVSVNLSAKDFRSRDVI 606

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + ++  ++ +  + SR+++  +E+ ++ +   +R  +  L+++G+ + LDDFGT  S LS
Sbjct: 607 QKVRDALAGSGLAASRLEIEVTETALLDDKSLTRQYIEELKQLGVRIALDDFGTGYSSLS 666

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +       + + +L+ I+ +++ +  ++  + +     +K L  
Sbjct: 667 YLHKLPLDKIKIDRSFLMDVTQNPRSLELLKGIVNLSRPLGLSVTVEGVETFEQLKIL-A 725

Query: 930 MGC--DYIQDSHVASPLGFNSILKL 952
           +    D +Q     S L  + I  +
Sbjct: 726 LQVKPDLVQGFLFGSALSASGIETM 750


>gi|330877049|gb|EGH11198.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 818

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/596 (21%), Positives = 258/596 (43%), Gaps = 18/596 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLMAVNLFTAVVLILLALLRVRRLIVQRRLFANALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+    V   P    +    S    G P+      +  ND+ +  T++D  V  +    
Sbjct: 261 IDVAGTIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDSSTLIDQIVTGKLKGG 320

Query: 480 QYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + + ++  D     + +   P+  + G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SADSKLIQRLDGSTVSVALVGTPIY-TEGVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD S T  +    +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFERRLQQVLDDSTTGSHC---LMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 436

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+    +    D A A+R+ +         R    T S
Sbjct: 437 LPQGLRDGDTLARLGGDEFGVLLVDCT-ASTAHDIAEALREIVQGLHFMWKGRPFMTTVS 495

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  T    L  A++A Y AK +G N V+ + V       R   +   + L +
Sbjct: 496 IGLVHLGDTPATLEGSLSAADMACYMAKEKGRNRVQVYSVDDLTLSMRFGEMAWIQRLHM 555

Query: 714 AVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  + D+  E+  +E L++        +    F+  AE   ++  ++
Sbjct: 556 AMDENRFCLYAQEIASINDQGSEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 615

Query: 772 LFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            ++++ + + I   +       P     IN++   + D+   E ++        +P  I 
Sbjct: 616 RWVVQNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDNFLEYLKQQFKNFAVAPEMIC 675

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 676 FEITETSAIADLDSAIRFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 735

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   +A P
Sbjct: 736 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQVESALQEMGVDFAQGYLIARP 791


>gi|241766460|ref|ZP_04764331.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
 gi|241363333|gb|EER58859.1| diguanylate cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
          Length = 632

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 213/435 (48%), Gaps = 9/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +   +   A  D +TG  NR +F +RL   +  ++ +   R  ++ ID+D +K +ND 
Sbjct: 199 RNAENRLHALAHTDAVTGTGNRHAFNERLAAEILRAS-NLGSRLALIYIDLDNFKTLNDT 257

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L  +  R+   ++  D ++RL G+ F +IL  + N   +  +   +     
Sbjct: 258 FGHAAGDGLLRQVAVRLRSAVRAGDSISRLGGDEFAVILRLDMNDETLTRYGQRIVDIFQ 317

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                + ++++VT S G A++         ++ NA+ AMY AK  G N    F  S  ++
Sbjct: 318 STYTEVGQQVSVTCSAGIATFPDDASDRDSLVSNADTAMYRAKEMGKNRCVRFDASMNQA 377

Query: 703 DRVM--IKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                 ++  L   +E+   L L Y  + R  D  +VG EAL++W HP+ G+IS  E + 
Sbjct: 378 LARRQTVEHALRWELEHGSGLALHYQALYRATDRALVGAEALLRWTHPELGSISPLEVVS 437

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  +  ++L    RD   W+ Q    P+ + +NI+++ L D +  E +  ++ 
Sbjct: 438 VAEDCGLIIPLGYWVLRTACRDAAQWQAQG---PLRVAVNISARQLGDPQFLERVMDILR 494

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +  ++++  +E+V+M N E     L RL ++GI L +DDFGT  S L+YL  +P  
Sbjct: 495 EEGLAAHQLEIELTETVLMENMEAGAHTLHRLSQLGIHLAIDDFGTGYSSLAYLRQLPMS 554

Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      E    I+ +I+ +A  +   + A+ +      + L + GCD +Q 
Sbjct: 555 RLKIDRSFVKDLPAQEHSRTIVTAIVALAHGLGLQVTAEGVETPQQAQYLVQQGCDVLQG 614

Query: 938 SHVASPLGFNSILKL 952
              A PL     + L
Sbjct: 615 YVFARPLPAPQFVAL 629


>gi|171317644|ref|ZP_02906829.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MEX-5]
 gi|171097172|gb|EDT42022.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MEX-5]
          Length = 779

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ E +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 386 NAGDIVLQMTAARLSEAVGDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 DVRGSSFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 506 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFISIAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD  +   + + INI+       +L E +   +  T  
Sbjct: 566 TGLIVPIGDFVIRTACEQIARWRDDGHDT-LTLAINISPVQFWRGDLIETISQALQDTGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 625 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 685 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLSALGEIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 745 RPVPADAIPALIAR 758


>gi|84624077|ref|YP_451449.1| hypothetical protein XOO_2420 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368017|dbj|BAE69175.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 928

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/617 (20%), Positives = 248/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 311 FELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 368

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 369 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 426

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  D+T ++++ E 
Sbjct: 427 LRISDGGLPE-QLELCFYRNSGQLIWVQVLIELDR-REGLPPRFVALFRDVTREREANER 484

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K +ND  G A G
Sbjct: 485 IELLAHYDRLTGLPNRFLLREQAENAIREAHERGQV-LAMLLIDLDGFKSVNDSFGYATG 543

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 544 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 603

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
              + + ASIG A           +L+ A+ AM+ AK  G N    +        +  ++
Sbjct: 604 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMHAAKETGRNTFHYYSQDVLLRAQRRLE 663

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               L  A+E  E  LVY P++    +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 664 LGHALQGALEREEFTLVYQPLVNTSGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 723

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + + +++  L +    E +  +     + PS
Sbjct: 724 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVSVKVSAVQLRERGFAERVLEICRDNGWPPS 782

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 783 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 842

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 843 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 902

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 903 SPRDMAQWLREAETGMR 919



 Score =  124 bits (312), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +       +      +H  D  +  
Sbjct: 108 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPPPNNLTALSGLMHPEDHAHVS 167

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 168 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 227

Query: 525 SLEGILCN 532
             + +   
Sbjct: 228 LEQQLREQ 235



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+    + G        
Sbjct: 228 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMIHLRLQGIRGILRLL 287

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
              +     R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 288 CRPS-VAQLRSAWRK-IKHEGMPVHFELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG 345

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 346 QLQNVTEQRQTDALIRWR------TELLNR 369


>gi|28868943|ref|NP_791562.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852183|gb|AAO55257.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 818

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 128/596 (21%), Positives = 257/596 (43%), Gaps = 18/596 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLMAVNLFTAVVLILLALLRVRRLIVQRRLFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+    V   P    +    S    G P+      +  ND+ +  T++D  V  +    
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDSSTLIDQIVTGKLKGG 320

Query: 480 QYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + + ++  D     + +   P+  + G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SADSKLIQRLDGSTVSVALVGTPIY-TEGVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD S+T  +    +M +D+D++K +ND  G A GD++L  L + 
Sbjct: 380 TGLVNRSEFERRLQQVLDDSSTGSHC---LMFLDLDQFKLVNDTGGHAAGDELLRQLCQA 436

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+         D A A+R+ +         R    T S
Sbjct: 437 LPQGLRDSDTLARLGGDEFGVLLVDCTT-STAHDIAEALREIVQGLHFMWKGRPFMTTVS 495

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  T    L  A++A Y AK +G N V+ + V       R   +   + L +
Sbjct: 496 IGLVHLGDTPATLEGSLSAADMACYMAKEKGRNRVQVYSVDDLTLSMRFGEMAWIQRLHM 555

Query: 714 AVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  + D   E+  +E L++        +    F+  AE   ++  ++
Sbjct: 556 AMDENRFCLYAQEIASIKDQGNEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 615

Query: 772 LFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            ++++ + + I   +       P     IN++   + D+   E ++        +P  I 
Sbjct: 616 RWVVQNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFKTFAVAPEMIC 675

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 676 FEITETSAIADLDSAIRFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 735

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   +A P
Sbjct: 736 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQVESALQEMGVDFAQGYLIARP 791


>gi|66046884|ref|YP_236725.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257591|gb|AAY38687.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 820

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/595 (20%), Positives = 247/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RL  +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RLILNLLIAVNLITAVVLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +         G P+      +  ND+ +  T+++  +  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKGTQASGLPLAALFNLLDENDQKDQSTLVEQIITGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+  + G I   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIY-TEGVISGAVLVLHDMTQEQQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD           +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFERRLQRVLDEDCGQGRSHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPAETALDMAEALREVVQRLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  +    L  A++A Y AK RG N V+++ V       R   +   + L +A
Sbjct: 499 GLVHLGDTPASLEGSLSAADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEVGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +       P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFKTFDVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLQSAIRFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIESALQEMGVDFAQGYLISRP 793


>gi|323500039|ref|ZP_08104993.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio sinaloensis DSM 21326]
 gi|323314895|gb|EGA67952.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Vibrio sinaloensis DSM 21326]
          Length = 664

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/451 (26%), Positives = 230/451 (50%), Gaps = 14/451 (3%)

Query: 519 ITEQKKSLEGILCN----AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +TE K ++E         A+ D LTG+PNR  FLDRL   +  +         ++ ID+D
Sbjct: 205 LTEAKSAIEEKNTQLHNRAYFDPLTGLPNRSLFLDRLNQSILNAERSGK-SFALLFIDLD 263

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND+ G  VGD +L  +++RI + ++  D+ AR SG+ F ++L    +     + A
Sbjct: 264 HFKDVNDMHGHEVGDQLLKQVSKRIKQSIRVTDLSARFSGDEFVVVLDHIQDVSVAINVA 323

Query: 635 IAM----RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             +      +++ P  +  + + ++ASIG + +     T   +++ A+ AMYHAK  G N
Sbjct: 324 NRIATKLINALSRPFQIGNQSVLISASIGVSIYPEDSATQDTLIRFADNAMYHAKSSGKN 383

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + + +     R       ++  L  A+   +  L Y P   L  E++ G+EAL++W HP 
Sbjct: 384 NFQFYSKELNRIAMSQKEMERALDEAINGDQFELHYLPKWHLKTEQVEGVEALVRWQHPI 443

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +  ++F+ IAE    I+ ++L + E+       W  +     I + INI+++ L   
Sbjct: 444 KGLLYPNDFVPIAESTGQIRLLDLLVTEKALNQHHDWLSRGIDLGI-LGINISARSLKHP 502

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  + ++A+I ++     +I++  +E+V++ N E +++L   L++IG+ + LDDFGT  S
Sbjct: 503 DFFDQLKAIILRSGVPTQKIEIEITETVMVENIEYAQVLFAELKEIGVRVALDDFGTGFS 562

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL    F T+K + S +   T    +++  ++I+ +   +  T++A+ +      ++
Sbjct: 563 SLSYLKDFDFQTLKIDRSFVVDYTTNNTSLVLLKNIVQLGNELGVTVVAEGVETAQQQQD 622

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           L  MGC   Q  ++  P   N ++  L  + 
Sbjct: 623 LFEMGCTTGQGFYLTKPQPANELVNALFNQL 653


>gi|325523546|gb|EGD01852.1| signal transduction GGDEF/EAL domain protein [Burkholderia sp.
           TJI49]
          Length = 745

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 213/435 (48%), Gaps = 7/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   +   A+    R  ++ ID+D +K +ND LG 
Sbjct: 295 EREMTQLAEYDLLTGLANRYATLRGLRNDVSAPASLS--RLGLLFIDLDNFKTVNDTLGH 352

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 353 NAGDIVLQMTASRLSDAVGDEGTLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 412

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 413 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 472

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 473 LMRWEQQLRVALAEGQLFLAYQPKIDLAHRTITGFEALARWDHPEHGIISANEFISIAES 532

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++    R I  W ++ +   + + +NI+       +L E +   + +T  
Sbjct: 533 TGLIVPIGDFVIRTACRQIARWHEEGHDT-LTLAVNISPVQFWRGDLIETISRTLQETGI 591

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             S ++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 592 EASHLELEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 651

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 652 DRSFVQAIPNDRSVCVMVASIVHLARSLGLTVVVEGTETEEQIAWLSALGEIEAQGFLFS 711

Query: 942 SPLGFNSILKLLKER 956
            P+  ++I  L+   
Sbjct: 712 RPVPADAIPALIARY 726


>gi|297538224|ref|YP_003673993.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257571|gb|ADI29416.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 736

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 219/436 (50%), Gaps = 5/436 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E+  +   +   A  D LT +PNR  F   LT  L  +      +  ++ ID+D++KKI
Sbjct: 296 SERHNAEAELNKLANHDPLTSLPNRTYFQQFLTHSLAQAYRQKQ-QVYLLFIDLDRFKKI 354

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD VL  + RR+ E+L+  D +ARL G+ F ++      +   ++ A  +  
Sbjct: 355 NDSEGHELGDAVLRLIARRLNEILRADDFVARLGGDEFAVVYTHPPVNNAASNLARKIIG 414

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVS 698
            ++    L  R  +V ASIG + + +    +  +L++A+LAMY AK  R G    S  ++
Sbjct: 415 IVSESFELEGRRYSVGASIGISVYPNDATDAHALLRHADLAMYQAKSKRSGFEYFSEEMN 474

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            F  +++ I+  L  A+E  EL L+Y P + L   ++VGLEAL++W        S  +F+
Sbjct: 475 VFAHEQLEIENGLRQALEKGELLLMYQPKVDLRTNQVVGLEALVRWLTNAGVLTSPDKFI 534

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  F++       + W +    PP  + +NI+ +   D  L   +  +I
Sbjct: 535 PIAEETGLIVPIGRFVIREACEQWVRWHEARLNPP-PVAVNISPRQFSDLSLIADILEII 593

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T  +P+ + +  +ES  M +PE +  +L  +R + + L +DDFGT  S L  L  +P 
Sbjct: 594 KTTGMNPAMLNVEITESATMDDPEMTMEILAEMRALNLHLYIDDFGTGHSNLGQLRRLPI 653

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK + S +    +      I+ +II +A  ++  ++++ I  +  +  L  +GCD IQ
Sbjct: 654 DAVKIDKSFINDVLTNNDDAEIVTAIINLAHALKIRVVSEGIETKAQLAFLRELGCDEIQ 713

Query: 937 DSHVASPLGFNSILKL 952
              V+ P+  + +   
Sbjct: 714 GFLVSKPVSHSQVETF 729


>gi|332992690|gb|AEF02745.1| sensory box/GGDEF/EAL domain-containing protein [Alteromonas sp. SN2]
          Length = 1393

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 132/628 (21%), Positives = 253/628 (40%), Gaps = 19/628 (3%)

Query: 340  LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGYFSQ 398
                 +   + +  L   +T  +     +          +++L+    +       +  Q
Sbjct: 775  FTVGPLASSVEYNVLPATLTFDMPYVPWRSPFAYAAYFTLILLMIIAYVVSRQRHLFRLQ 834

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIH 457
                     S A   + D V  +D  +  V   P    +    +  S+   I        
Sbjct: 835  KAQQQALLFSDAFRQTRDWVLIFDKNKVPVAANPAFENVFNFNSKESLAKQIDRLFTR-- 892

Query: 458  INDRDNFRTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSN--SNGDILRYI 513
                      L   +   +G    + E  +  AD + + ++I I  +     +     Y+
Sbjct: 893  ---YPTLEWQLSGKLSDLKGGEFWKDEAVIEGADTKQYDVLIDISAVKGNEKDEQADHYL 949

Query: 514  GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
             + +DITEQK +   +L  A  D+LTG+ NR   LDRL   +  +    +    V+ +D+
Sbjct: 950  LVVSDITEQKNAERKLLKLANYDSLTGLVNRSLLLDRLEHAIAGA-RQKSAHVAVLFVDL 1008

Query: 574  DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            D++K IND LG   GD +L  +  R+  L+     +ARL G+ F I++     +  +  F
Sbjct: 1009 DRFKGINDSLGHDYGDKLLKVVANRMRNLVSDAGTVARLGGDEFVIVIEDMETTDGLTSF 1068

Query: 634  AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
               + +S+  PI+L    + V+ S+G A +    I  +E++K A++AMY AK    +   
Sbjct: 1069 VAQLIESVETPISLANEVLRVSCSVGIAFYPDDAIEPAELIKQADVAMYSAKKDTLSGFT 1128

Query: 694  SFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F        +  +  +  +  A      +  Y PII   ++  +G+E L++ +      
Sbjct: 1129 YFTKDMNDRAKQRLITENLIKRAYSEDSFFNHYQPIINTHEKNTIGVELLLRGEL-DGNP 1187

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            I    F+ + EEL  I  +    + R A D+ +W +       F+ IN+++         
Sbjct: 1188 IYPDVFIPVLEELRYIIEVTRAAMRRAAEDLATWYEDGFTG--FVSINLSALHFKTEFDL 1245

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            E + +L+ +        +   +E V+M + + +   + R    G  L LDDFGT  S LS
Sbjct: 1246 ESVFSLLKEFNLPKEAFRFEITEGVLMDDSDNALRQIERFVDAGFILALDDFGTGYSSLS 1305

Query: 872  YLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL   P   +K + S +          A++ + I +A ++    +A+ +  +     L+ 
Sbjct: 1306 YLKRYPLSVLKIDKSFVDDMAPGNANDALVTTTITLASSLNMLSVAEGVETQEQALSLSE 1365

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKERF 957
             GC   Q    A P+  + +   L +++
Sbjct: 1366 KGCVLHQGYFYAKPMPSSELFPYLNKKW 1393


>gi|188576745|ref|YP_001913674.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576936|ref|YP_001913865.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521197|gb|ACD59142.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521388|gb|ACD59333.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 920

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/617 (20%), Positives = 248/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +         +    +  G   +V ++G   +Q+V         I    E  +
Sbjct: 303 FELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG--QLQNVTEQRQTDALIRWRTELLN 360

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 361 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 418

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  D+T ++++ E 
Sbjct: 419 LRISDGGLPE-QLELCFYRNSGQLIWVQVLIELDR-REGLPPRFVALFRDVTREREANER 476

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K +ND  G A G
Sbjct: 477 IELLAHYDRLTGLPNRFLLREQAENAIREAHERGQV-LAMLLIDLDGFKSVNDSFGYATG 535

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L   +        A  +  ++  P+   
Sbjct: 536 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDMSEPEDAGHVARKLIAALGEPLRKE 595

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
              + + ASIG A           +L+ A+ AM+ AK  G N    +        +  ++
Sbjct: 596 HVTLKLGASIGIALQGEGLSDFDSLLRAADAAMHAAKETGRNTFHYYSQDVLLRAQRRLE 655

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               L  A+E  E  LVY P++    +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 656 LGHALQGALEREEFTLVYQPLVNTSGDASPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 715

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          + + +++  L +    E +  +     + PS
Sbjct: 716 IVRLGEWVIGEACRQAVVWDRAGLHFS-RVSVKVSAVQLRERGFAERVLEICRDNGWPPS 774

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 775 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 834

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + PL
Sbjct: 835 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSRPL 894

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 895 SPRDMAQWLREAETGMR 911



 Score =  124 bits (312), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG +       +      +H  D  +  
Sbjct: 100 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYSEQPPPNNLTALSGLMHPEDHAHVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R  D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 160 AAVQAHLEGRTDTYVAEFRLRQHDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLREQ 227



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W WD  +D +  + D    LG+    + G        
Sbjct: 220 LEQQLREQQAQLEEAQRIASMGSWSWDSHQDALWVSQDFLQQLGMIHLRLQGIRGILRLL 279

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
              +     R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 280 CRPS-VAQLRSAWRK-IKHEGMPVHFELEINGLPGANPHHLRVWAQPVFDGDGSMVRVLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|170746666|ref|YP_001752926.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653188|gb|ACB22243.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 953

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 129/565 (22%), Positives = 237/565 (41%), Gaps = 25/565 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER   A+      +  +               I G+A G++           
Sbjct: 404 ERQLQEQNERFDAALNNMSQGLCMFGGHGRLKVYNAQFCRIYGIAPGALDTEPAQAEV-- 461

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                      L  +     G  +       AD     + I + PM++       ++   
Sbjct: 462 ------RRLAGLADWPDAESGPSRRTLTRTLADG--RCVEITVEPMADG-----GWVETH 508

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+T    +   I   A  D LTG+ N ++ L                  TV+ +D+D +
Sbjct: 509 EDVTASVTAQARIAHLATHDALTGLSN-RALLAERLAAAFADHAGGGPAVTVICLDLDDF 567

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD++L  + RR+  L      +ARL G+ F ++L   +    +   A  
Sbjct: 568 KGINDTLGHPAGDELLRQVGRRLTALCPPGGTVARLGGDEFAMVLCEADLPDGVLVLAEQ 627

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  P  L  + ++V  S+G A   +      ++L+ A++A+Y AK  GG  V  F 
Sbjct: 628 ILTQLRRPFFLAGQFVSVDGSLGIAVSGTEDADGDDLLRRADVALYAAKADGGRRVRVFE 687

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       ++ +L LA+  +++ L Y P+  L    +   EAL +W HP+ G IS 
Sbjct: 688 QEMEERQNQRRWLERELRLAIGTAQIELHYQPLFDLATNAVTSFEALARWHHPERGMISP 747

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I A+  ++LER   D ++W        + + +NI+     +  L   +
Sbjct: 748 GEFIPVAEATGLIDALGAYVLERACADAMTWP-----GSLRVAVNISPIQFREGNLDRFV 802

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ KT     R++L  +ESV++   + S  +L RLR++G+  ++DDFGT  S LS L 
Sbjct: 803 EEVLRKTRLPSHRLELEITESVILSQDQASFDMLSRLRRLGVRFSMDDFGTGYSSLSSLN 862

Query: 875 YIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              FD +K + S +    EK    AI+  +  + ++++ T  A+ +     +  L   G 
Sbjct: 863 TFRFDKIKLDQSFVRNLLEKDEAAAIVHVVAELGRSLKITTTAEGVETPEQLARLRASGF 922

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
             +Q   ++ P+    +   +  + 
Sbjct: 923 SEVQGYLLSKPIPAAGVAAFITAQQ 947


>gi|114562205|ref|YP_749718.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB
            400]
 gi|114333498|gb|ABI70880.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina NCIMB
            400]
          Length = 1276

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 235/454 (51%), Gaps = 14/454 (3%)

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            ++G I+  I I   ++  K+  E     A  D+LTG+ NR  F  +L+ ++     +   
Sbjct: 810  ASGTIIILIMILFGLSRIKQMKELSR-RANFDSLTGLANRFHFNQQLSLLMS----NPYN 864

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
               V+ ID+D +K++ND +G  VGD++++ + +R+   L   D+LARL G+ F +I+  E
Sbjct: 865  TAAVVFIDLDHFKEVNDSMGHDVGDELIIQVGKRLQHCLSQQDVLARLGGDEFALIIPYE 924

Query: 625  NNSLKIAD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +  +          +R+++     + +  +  +ASIG A +      +  +LK+A+ A
Sbjct: 925  QVAADVNRDLVNIIERVRQTLNKGYQINQYWLNSSASIGVACFPDDGKDAKTLLKHADTA 984

Query: 681  MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            MY AK  G N    F    S+   +R++IK+ L  A+ +++L + Y P   +   EIVGL
Sbjct: 985  MYAAKQNGRNGSYFFNETLSTALLERLLIKDQLNNAMSDAQLEVHYQPKCCVDTHEIVGL 1044

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            EAL++W+HP+ G IS S F+  AE+  +I  I L++LE+  +    W  Q  +    I +
Sbjct: 1045 EALLRWNHPQHGMISPSRFIDQAEDSGLIIDIGLWVLEQACQQGYHWHQQGILRG-NISV 1103

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            NI+   L    + + + A++ +T +    ++L  +ES+++ + + ++ +L  L+++ + +
Sbjct: 1104 NISPVQLSQPTIVDDIAAILERTAFPAHHLELEITESLLIKDLKTAQDVLLALKQLRVRI 1163

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             LDDFG   S L+YL   P DT+K +   ++    +     +LR+II +   ++  +IA+
Sbjct: 1164 ALDDFGKGYSSLNYLTQFPIDTLKIDKGFLSSILPEETSNIVLRNIITLGNELKLDVIAE 1223

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +     + +L +  C  +Q    +  L    + 
Sbjct: 1224 GVETHAQLLKLKQYNCKIVQGFLFSHALDVTQLE 1257


>gi|325981116|ref|YP_004293518.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Nitrosomonas sp. AL212]
 gi|325530635|gb|ADZ25356.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Nitrosomonas sp. AL212]
          Length = 958

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 143/649 (22%), Positives = 285/649 (43%), Gaps = 21/649 (3%)

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
            S++     F I   +  ++R + +     LI      +W+ +   L   +   A + G 
Sbjct: 303 ISLISMTWVFAIVFMLGIFQRNITIPLLLALISCGLCAIWIVLR-FLHIWLPPGAALTGT 361

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           + I  L+ +  I   +      Q +F      + A+   GD V   D     +       
Sbjct: 362 IAIYPLLNWQRINEFM------QILFVAKAGSNAALESVGDGVITTDTHNHIIYMNKGAE 415

Query: 436 TILGLASGSMHGPIRNWLPYIHI---NDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQ 491
            ILG+      G   + L  +H+    +   F   +D  +      +   +  ++    +
Sbjct: 416 RILGVTLNQTQGV--SLLKLMHLSKMQESTAFTEFIDLEIPIPAPSMGTIQCYLKTPGGE 473

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
              + I    + + +  ++ ++    DIT+  +  + +   A  D LT +PNR   L R 
Sbjct: 474 KRAVRITRHMLRDEHEALMGFLFALADITDTVELTKQVAYQASYDTLTNLPNRVLLLTRF 533

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
             +  L      +  TV  + +D +KKIND LG   GD++L   ++R+  ++     LAR
Sbjct: 534 KEMASLPQKYGKI-ITVFFVSLDNFKKINDALGHRAGDELLKMASQRLSSIISNDSFLAR 592

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
             G+ F ++     +    A  A      I     L  +E+ VT SIG + ++     + 
Sbjct: 593 WGGDEFVLLFSDLQDKEAAAQRAQEALGLIEHQFLLYGQEVFVTVSIGISFFSGEGEGNE 652

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSD---RVMIKEDLCLAVENSELYLVYHPII 728
            +L+ A  AM   K  GGN    +   S  +    R+  +++L LA+    L ++Y PI+
Sbjct: 653 AVLERAGTAMRRVKSEGGNSFGFYSAESSIAWTRDRLKFEKELRLALNEGHLQVLYQPIV 712

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +  ++IV +EAL++W HP  G +S  +F+ +AE + +++ +   +L+     I + +  
Sbjct: 713 DVRQQDIVRMEALVRWPHPTRGYLSPGDFIPLAESVGLMEQLGKEVLKTAC--IAAHKLM 770

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
               PI + +N+  + LL       +  ++++T    + + L  +ES V+ +  ++ ++L
Sbjct: 771 QIDKPIHVSVNVHPRQLLHGNFLPALSRVLTETRLPATSLILEITESAVVSDMAQASVIL 830

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMA 906
            +++ +G  + LDDFGT  S L+ L  +P D +K + S +    +    + I ++II + 
Sbjct: 831 QQIKALGALIALDDFGTGYSSLTLLRELPIDILKIDKSFIRALDQNINDLTITQAIIGLG 890

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            N+   I+A+ +  +   + L    C   Q    + P+ + SIL+L+ E
Sbjct: 891 VNLGLMIVAEGVESDRQARILLENHCHLQQGYFFSRPVPYESILQLVNE 939


>gi|260463139|ref|ZP_05811341.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259030989|gb|EEW32263.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 770

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 142/757 (18%), Positives = 292/757 (38%), Gaps = 50/757 (6%)

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN-----RWHAKVGYIT 286
           +++  GF ++ + +       W+      L+ +       +L        R         
Sbjct: 26  LTLSIGFFAQTLLVVLVY---WKTRDPAYLAVTFGFLAVAFLRLRNIRKYRHAPTPKSWE 82

Query: 287 --------FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
                   +     +      +F +  +  +       + V            + Y    
Sbjct: 83  EARRRENDYIFYGSMHGFMLGTFCFVGIYLAYDGFAEIAAVCVTLASATSIAGRNYGSPR 142

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           + +  +I+   W I L   +        I   L    +  +      V + + A     +
Sbjct: 143 M-VMIFIMTMTWPISLGFILRGD-PYHFILGLLSAPFLFAIKRFADLVREVLFAALSEEK 200

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL---- 453
                 +R + A+      +              + A ++ L ++ ++ G   + L    
Sbjct: 201 KANRLAQRFNRALNTMSHGLVMLGPDGRVAVANAEAAHLMSLKSADALLGRSIHGLLMRG 260

Query: 454 ---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                +   D       L   +   R R      V  A+ Q +    R        G   
Sbjct: 261 VAGGMLAPKDCRYIEAQLTRALREGRDRKVL---VSLANGQHYEFSAR-------EGSQE 310

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +    D+T + ++ + I   A  DNLTG+PNR  F + +   +     D      V+ 
Sbjct: 311 LGVITFEDVTARVEAEDKIRFMARYDNLTGLPNRAYFHELIGEAMASGDRDRLCGLAVL- 369

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            D+D +K +ND LG  +GD ++ ++  R+  +      ++R  G+ F +      +   +
Sbjct: 370 -DLDDFKSVNDTLGHPIGDGLIYAVAERLAAVAGQGITVSRFGGDEFMVFFDRIEDESHL 428

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +  ++   +++    + + AS G             M+  A+LA+Y AK  G N
Sbjct: 429 TIQIDEIFAALQGEVDVAGHGLRIQASGGAVLSRVRDSDVDAMIVKADLALYKAKELGKN 488

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  +   + R    +K DL  AVE+  L +VY PI+ +    I   EAL +WDHP 
Sbjct: 489 GWRLFEAAMDAAFRNRQLMKADLRSAVESKGLRVVYQPIVAMSTMRIASCEALCRWDHPD 548

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S   F+ +AEE+ +I  I+ F+L     +   W DQ       + +N+++KD    
Sbjct: 549 LGPVSPGIFIPLAEEMGIISEISTFVLHAACTECAKWPDQT-----SVSVNLSAKDFRSR 603

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           ++ + ++  ++ +  +  R+++  +E+ ++ +   +R  +  L++IG+ + LDDFGT  S
Sbjct: 604 DVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLTRQYIEELKQIGVRIALDDFGTGYS 663

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL  +P D +K + S +   T+   +  +L+ I+ +++ +  ++  + +     +K 
Sbjct: 664 SLSYLHKLPLDKIKIDRSFLMDVTQNSRSLELLKGIVNLSRPLGLSVTVEGVETFEQLKI 723

Query: 927 LTRMGC--DYIQDSHVASPLGFNSILKLLKERFPLVK 961
           L  +    D +Q     S L  + I  +    +P  K
Sbjct: 724 L-ALEVKPDLVQGFLFGSALSASGIETMSTTVWPFAK 759


>gi|325921013|ref|ZP_08182895.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas gardneri ATCC 19865]
 gi|325548495|gb|EGD19467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas gardneri ATCC 19865]
          Length = 920

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 137/617 (22%), Positives = 251/617 (40%), Gaps = 12/617 (1%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                  +A        +    +  G   +V L+G   +Q+V         I    E  +
Sbjct: 303 FELEINGLAGINPHHLRVWAQPVFDGDGTMVRLLG--QLQNVTEQRQTDALIRWRTELLN 360

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
                      + ++   R+  T +   I GL   ++   +   L     + RD F   L
Sbjct: 361 RVSALGKIGGCEIEVDTRRMQWTEECYRIHGLRKENI--TLEQALSLYTQDSRDAFEAAL 418

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                      Q E        Q  W+ + I       G   R++ +  D+T ++++ E 
Sbjct: 419 LRISDGGLPE-QLELCFYRNSGQRVWVQVLIELDR-REGLPPRFVALFRDVTREREANER 476

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I   A  D LTG+PNR    ++    +  +     +   +++ID+D +K IND  G A G
Sbjct: 477 IELLAHYDRLTGLPNRFLLREQAENAIREAHERGQV-LAMLLIDLDGFKSINDSFGHATG 535

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L   + R+ + L+  D+  R S + F ++L            A  +  ++  P+   
Sbjct: 536 DNLLKLASSRLHQHLRNSDLFGRFSDDEFIVLLRDLGEPEDAGHVARKLISALGEPLRKD 595

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVM 706
              + + ASIG A           +L+ A+ AMY AK  G N    +          R+ 
Sbjct: 596 HVTLKLGASIGIALQGDGLSDFDSLLRAADAAMYAAKESGRNTFHYYSQDVLLRAQRRLE 655

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+E  E  LVY P++  + +    +EAL++W+ P  G  S  EF+ IAEE   
Sbjct: 656 LEHALQGALEREEFTLVYQPLVNTVGDTSPAIEALMRWNRPGHGPCSPVEFIPIAEECGE 715

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++    R  + W          I +N+++  L +    E +  +     +SPS
Sbjct: 716 IVCLGEWVIGEACRQAVVWDRAGLNFS-RIAVNVSAVQLRERGFAERVLEICRDNGWSPS 774

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K + S
Sbjct: 775 RLELELTESALIRDSDSLRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKIDRS 834

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         + ++I+ +   +   ++A+ +    +   L   GCD IQ    + PL
Sbjct: 835 FVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRLQGCDEIQGYFYSRPL 894

Query: 945 GFNSILKLLKERFPLVK 961
               + + L+E    ++
Sbjct: 895 SPRDMAQWLREAEAGMR 911



 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  + +  +   +WDWDI  D V  +     +LG     +   +      IH +D     
Sbjct: 100 RWEMGLDSADHGLWDWDIPADVVYRSERWTRMLGYLEQPLPNNLTALSGLIHPDDHALVS 159

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKK 524
             + + +  R      EFR+R +D Q+ W++ R R +   ++G  LR +G   D+   K 
Sbjct: 160 AAVQAHLDGRTDTYVAEFRLRQSDGQWRWILDRGRVVSRTADGRPLRMVGTHTDVHHHKL 219

Query: 525 SLEGILCN 532
             + +   
Sbjct: 220 LEQQLREQ 227



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 9/150 (6%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +     +   A   +    W  D ++D +  +PD    LG+    +   IR+ L  
Sbjct: 220 LEQQLREQQAQLEDAQRIASMGSWSLDTLKDALWVSPDFLQQLGMTQIRLQ-SIRDILRL 278

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           +        R+     + +    + +E  +        H + +  +P+ + +G ++R +G
Sbjct: 279 LGRPSIAQLRSAWRK-IKHEGMPMHFELEINGLAGINPHHLRVWAQPVFDGDGTMVRLLG 337

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              ++TEQ+++   I         T + NR
Sbjct: 338 QLQNVTEQRQTDALIRWR------TELLNR 361


>gi|172061315|ref|YP_001808967.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
 gi|171993832|gb|ACB64751.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MC40-6]
          Length = 779

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 386 NAGDIVLQMTASRLSDAVGDEGSLARIGGDEFVVVMKGDDIERRAVRLAEAIIRMFGEPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 DVRGSSFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 506 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFISIAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD  +   + + INI+       +L E +   +  T  
Sbjct: 566 TGLIVPIGDFVIRTACEQIARWRDDGHDT-LTLAINISPVQFWRGDLIETISQALQDTGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 625 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 685 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLSALGEIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 745 RPVPADAIPALIAR 758


>gi|165918173|ref|ZP_02218259.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii RSA 334]
 gi|165918033|gb|EDR36637.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii RSA 334]
          Length = 577

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 136/578 (23%), Positives = 267/578 (46%), Gaps = 29/578 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +F+   +  +A+    + +   D            + ++      + G           
Sbjct: 11  QVFNTLGKLDVALSALNEAIVWTDHEGHIAWCNLPFSQLISRPRIEIIGLFI-------- 62

Query: 459 NDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            D+       +  +      + +   + E    A D++  ++    + + +  G  L +I
Sbjct: 63  -DKTITLKKGNQIISLFKVCHEKLHFKEEIIEFAKDSKTLYLSAFSQQIVDKKGG-LHFI 120

Query: 514 GIANDITEQK-------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               D+T Q+       K+   I   A +D LT +PNR+ F+ RL   +       + + 
Sbjct: 121 IALQDVTLQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPK-SVDSKL 179

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISE 624
           +++ +D+D +K IND LG  +GD VLV ++ R+ +L        L  L G+ F I+L   
Sbjct: 180 SLLFLDLDNFKDINDALGHHMGDRVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDL 239

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  +  + +    +    + V  SIG      SK  S  +LK A++AMY A
Sbjct: 240 QQDKDATLCAKKISNAFSESFKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADMAMYQA 299

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N    +          R++++     A+E ++ YLVY P   L  ++I G+E L+
Sbjct: 300 KKKGRNTFSFYTEKLGERYRHRLILENAFHQALEENQFYLVYQPQYELSTQKIRGMETLL 359

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS  +F+ IAE+  +I  I  ++L    +    W+ +  +  I + IN++ 
Sbjct: 360 RWKHPELGEISPEDFIPIAEKAGIIIPIGEWVLRHACQQYKQWQSKIPVGEIKLSINVSP 419

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L+  +    +  ++ +T   P+ I+L  +E+ +M     ++ +L  LR+IG+++ +DD
Sbjct: 420 PQLIRKKFANSVAHILKETNTPPNVIELEITENSLMTKLNSAKKVLEELREIGLNIAIDD 479

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DTVK + + + G    +   AI++ +I +A+++  T I + +  
Sbjct: 480 FGTGHSSLAYLKILPIDTVKIDKAFVRGLPDDQHDTAIVKFVIDLARSLNLTKIVEGVEK 539

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  ++ L ++G   +Q ++ +  +  + + KLLK + P
Sbjct: 540 KEQMEFLLKLGGPLVQGNYFSKAIEADLMFKLLKNQSP 577


>gi|119486864|ref|ZP_01620839.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456157|gb|EAW37290.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 575

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 103/442 (23%), Positives = 214/442 (48%), Gaps = 5/442 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            K  E      + D +T +PNR +  ++   I      +      V+ ++I+++++IN+ 
Sbjct: 134 HKVQEEFKKLIYIDPITNLPNRLALREQFEEIKAKITLEKTQFIPVIAVNIERFRRINEA 193

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G    + +L ++  R+         +A L   +F +IL  + +   +   A  + K+++
Sbjct: 194 WGYDSTNCLLKAVGERLKNQFCSKAKIAHLDEEKFILILDIQEDENAVFKMAKNILKNLS 253

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
           +P  + ++EI +T S+G A ++       ++L  +++A+ +A  +GGN  E ++    + 
Sbjct: 254 LPFYIDDQEILITFSLGIAFYSQDGDEIDDLLHCSQVAVDYAHKQGGNRYECYQKTWKTK 313

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             D++ ++ DL  A+E+++  L Y P + L   +I+G EALI+W   K G +S + F+ +
Sbjct: 314 DHDQIALENDLRQALEHNQFQLYYQPKVDLKTGQIIGAEALIRWIESKRGFVSPAVFIPL 373

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE+ +I+ I  ++L    R   +W        + + +N++       ++C  +   +  
Sbjct: 374 AEEIGLIEPIGEWVLRTACRQTKTWHKLGLET-LKMAVNLSGCQFNLPDICPMVLETLLA 432

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S ++L  +ES ++ + + S   L RL+ +G+ + +DDFGT  S LSYL   PFD 
Sbjct: 433 EDLPSSCLELELTESFLVEHEDASIQKLNRLKALGLKIAIDDFGTGYSSLSYLQQFPFDV 492

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +       K   I+ ++I MA  +   ++A+ +    ++  L +  CD IQ  
Sbjct: 493 LKLDRCFVQNIDQNPKNKIIVEAVIKMAHQLNLEVVAEGVETTAELHVLRQYQCDIIQGY 552

Query: 939 HVASPLGFNSILKLLKERFPLV 960
             + P+       L++    L 
Sbjct: 553 LFSRPIPAQEFQALVESNKSLT 574


>gi|332530518|ref|ZP_08406458.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332040020|gb|EGI76406.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 709

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 231/450 (51%), Gaps = 13/450 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S   +   + +D LTG+PNR+   +RL   ++ S  D +    ++ +D+D +K +ND
Sbjct: 258 LKNSNNQLKEQSLRDGLTGLPNRRMLDERLRLAVERSERDGH-SFALLFVDLDGFKPVND 316

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GDDVL  + RR+   L+  D +AR+ G+ F I+L ++ ++  IA  A  +   +
Sbjct: 317 SFGHRFGDDVLREMARRLTAHLRAIDAVARVGGDEFVILLDNQGDADAIARIARRIIDDV 376

Query: 642 AMPINLLE----REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
           +  +   +    +E+ ++ SIG A +      + ++L  A+ AM+ AK  GG H   +  
Sbjct: 377 SAVVRGGDEDSPQEVRLSCSIGIARFPRDGA-ADQLLVQADAAMHAAKRAGGAHFVFYEP 435

Query: 696 RVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +S+   +++ ++ DL  A   + EL L Y P I   D  + G+EAL +W HP+ G +  
Sbjct: 436 HMSARAKEQLELQRDLRQALTRDGELELHYQPKISARDGSLTGVEALTRWRHPERGQLGP 495

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I A+  +++E+     ++WRDQ    P+ + +N++   L   +L E  
Sbjct: 496 GIFIPVAERFGLINALGAWVIEQACIQAVAWRDQG--QPLAVAVNLSVHQLRQADLAERT 553

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L++K    P+ +    +ESV M +   +  +  +L +IGI L++DDFGT  S LSYL 
Sbjct: 554 AELLAKHGLDPALLSFEVTESVAMEDTGHTLRVFEQLGEIGIQLSIDDFGTGYSSLSYLR 613

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +     +    AI+++++ +A  +  ++IA+ +  E     L+ +GC
Sbjct: 614 QLDADQLKIDQSFVRDLEHSADARAIVQAVVSLAHALGLSVIAEGVETEGQRDILSALGC 673

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           D +Q    A P+  +++    + R      
Sbjct: 674 DELQGYFYARPMPASALEDWRQNRSTPAPR 703


>gi|163848810|ref|YP_001636854.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526763|ref|YP_002571234.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Chloroflexus sp. Y-400-fl]
 gi|163670099|gb|ABY36465.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450642|gb|ACM54908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chloroflexus sp. Y-400-fl]
          Length = 845

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/441 (28%), Positives = 221/441 (50%), Gaps = 9/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  +L  +   A  D LTG+PNR  F DRL   ++ +    N    V+ ID+D++K +N
Sbjct: 403 EQHATLHKLAYQAHHDALTGLPNRLLFEDRLQQAIEHARRA-NTMVAVLFIDLDRFKHVN 461

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+ + RR    ++  D +AR  G+ F ++L    +  ++      + ++
Sbjct: 462 DTLGHTTGDMLLIQVARRFEACIRATDTIARHGGDEFLLVLSDITSPQQVTHVVRRLHEA 521

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +   EI V+ASIG + +         + + A++AMY AK    N  + F  +  
Sbjct: 522 LDQPFFVNGHEIFVSASIGASLYPIDGTDVIALQRAADVAMYRAKQLLHNSFQFFDAAIT 581

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ I+  L  A+E  EL L Y P +     ++VGLEAL++W HP+ G +S + F+
Sbjct: 582 DVSIERLQIENLLRRAIERHELLLYYQPKVD-RTGQLVGLEALLRWQHPELGMVSPARFI 640

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  ++L  +AR +  W           +  ++       +  + +   +
Sbjct: 641 PIAEETGLIVPIGRWVLREVARQVTQWWRDGLKVVPVAVN-VSVIQFTQADFAQTVADTV 699

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T    S ++L  +ES++MG  +  R  LG LR++G++L +DDFGT  S LSYL  +P 
Sbjct: 700 AQTALPFSWLELELTESMLMGQIDDLRRQLGELRQLGVTLAIDDFGTGYSSLSYLHRLPI 759

Query: 879 DTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           + +K + S +    +       +++ +II +  ++   I+A+ +      + L   GCD 
Sbjct: 760 NVLKIDRSFVARLDQDDAGVERSLITTIITLGHHLGVQIVAEGVETAGQRQILFDAGCDV 819

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q  H++ PL    +   L++
Sbjct: 820 FQGYHISRPLPAGVVRGWLEQ 840



 Score = 39.5 bits (91), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 25/129 (19%)

Query: 402 SDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           S+ +RQ+L   +  + + +   D+    +        + G  S  + G    +       
Sbjct: 18  SNLDRQALYAILANNINALLILDLGGVVLFANEAAQRLFGRQSAQLTGSPFGF------- 70

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                           +  L  +  +   DN    + +R+ P+    G     + + +DI
Sbjct: 71  --------------PLQPGLTVDAEIVRPDNSVVIVDLRVEPIEW-QGTPA-MLAVLHDI 114

Query: 520 TEQKKSLEG 528
           T++K++ + 
Sbjct: 115 TDRKQAEQQ 123


>gi|187926965|ref|YP_001893310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|241665294|ref|YP_002983653.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
 gi|187728719|gb|ACD29883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12J]
 gi|240867321|gb|ACS64981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia pickettii 12D]
          Length = 884

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 141/581 (24%), Positives = 260/581 (44%), Gaps = 16/581 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           + +  +L      +      ++  L V    + V         ++     A IL L   S
Sbjct: 306 SALVKLLRLESEYRQARDLRDQYRLVVNHLSEGVLTLSTDGRVLSYNRSAAQILHLTGTS 365

Query: 445 MHGPIR-NWLPYIHINDRDNF-RTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIR 500
             G  R +    +   D     R    + +  R GR        V A + Q  W+   + 
Sbjct: 366 WKGRPRMSLSDMVFGEDGAILPRAAWPTTLAARTGRAISNVVVGVPAGNGQIVWLRESVL 425

Query: 501 PMSNSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           PM + +       + I  DIT ++ + E +     +D+LTG+PNR +F++RL   L L +
Sbjct: 426 PMFSPDSASPHAVLVIFTDITAERSTYEQLRLLETKDSLTGLPNRAAFIERLDARLALPS 485

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           T  +    ++ + +D +K +N+ +G  +G+ VL    +RI        ++ARL G++F +
Sbjct: 486 TGQS---ALLYVGLDHFKTVNEAMGHHIGNQVLNVAAQRIRAEAGQRALVARLGGDQFSV 542

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +   +        A+ +  ++A P    ERE+ ++ASIG A +      +S ++  AE 
Sbjct: 543 AIDDPD---AADALALQVLGALAKPFAGGEREVHLSASIGIAVFPEDGGDASTLVSRAEA 599

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N V  +  +          + E +  A+   ++ LVY P   L   E+V 
Sbjct: 600 AMYRAKENGRNRVTRYSRALETQILRRFTLNERMRRALARGQVRLVYQPKYALASGELVA 659

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W  P+ G +S +EF+ +AEE   I  +  + L +      +W          I 
Sbjct: 660 VEALMRWSDPELGAVSPTEFIAVAEESGYILELGRWALMQACARGQAWERNFGFTG-RIS 718

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++      +   +   +  +  +PSR++L  +ESV++ +   ++ LL  L   G+ 
Sbjct: 719 VNVSARQCDAGVIERDVDEALKASGLTPSRLELELTESVLLADRLSTQRLLTSLAARGVR 778

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIA 915
           ++LDDFG   S LSYL  +P   +K + S ++G       ++  ++II MA+ +  T+ A
Sbjct: 779 ISLDDFGIGFSSLSYLRSLPIHNIKIDRSFISGVPAVADCVVLTKTIIAMARALNMTVTA 838

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +        L    CD +Q      PL   ++  LL+  
Sbjct: 839 EGVETPEQSAFLAAHACDEVQGFLFGRPLEVPALESLLRTH 879


>gi|190575199|ref|YP_001973044.1| putative GAF/GGDEF/EAL domain-containing protein [Stenotrophomonas
           maltophilia K279a]
 gi|190013121|emb|CAQ46753.1| putative GAF/GGDEF/EAL domain protein [Stenotrophomonas maltophilia
           K279a]
          Length = 708

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 228/460 (49%), Gaps = 11/460 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G+++R      D   +      +   A+ D LTG+ NR +F + L   L ++A   N
Sbjct: 250 DEVGELVRGFARMRDAIARH--DREVRRMAYTDALTGLTNRLAFREALDHRL-MAARAAN 306

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGI 619
            R  ++  DID +K++ND LG   GD+ L+   +RIG  +        +LAR  G+ F I
Sbjct: 307 HRLGLLFADIDDFKRVNDTLGHEAGDEALLQFAQRIGRAVAEAGGDEALLARFGGDEFVI 366

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++   + +      A  + + +  P+ +  RE+ +  SIG   +      ++ +LKN ++
Sbjct: 367 LVGDGDVAANARLLAEVLVRELGRPLVVQGRELFLGTSIGVTLFPDDAADATTLLKNGDI 426

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N    +  +   +      ++++L  A E  EL L Y PI R+ D  +VG
Sbjct: 427 AMYQAKMAGKNCYRYYSRAMDHAVERRVHMEQELRGAWERGELRLAYQPIFRMRDRRMVG 486

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +E L++W HP  G I  S F+ +AE+  +I+ I   +L     +   W   A    +F+ 
Sbjct: 487 VEVLLRWQHPTLGTIPPSVFIEVAEQSGLIEIIGPKVLRAACMEASQWPRGAAGDDLFVS 546

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ + L   EL   +   + ++    SR+ L  +E+ V+G+   +  LL +L + G+ 
Sbjct: 547 VNVSPRQLRGGELPALVAQCLHESGLPASRLHLELTETAVIGDEMVAAQLLDKLHRTGVK 606

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA  +  T++A
Sbjct: 607 VWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADMQRDPDDLALTTAIIAMAHALGITVVA 666

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + I  +   + L + GCD  Q   ++ P+    ++++++ 
Sbjct: 667 EGIEQQAQFELLAQRGCDLGQGYWLSHPVTATEVVRMIES 706


>gi|197335124|ref|YP_002155249.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197316614|gb|ACH66061.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 675

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 146/580 (25%), Positives = 255/580 (43%), Gaps = 37/580 (6%)

Query: 389 HVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLA-SG 443
           H + T    Q + S  E   +         D V+   I  D +       A +LG     
Sbjct: 111 HAVDTSERQQLLNSLKESESKYHKLTELLSDSVFL--IEGDIIVSANGASAKMLGFNNPT 168

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G   +    +H   R      L   +       Q   R            +R   + 
Sbjct: 169 EFIG--ESIEQLLHSPSR---TQCLSELISNLPSEQQLTVR------TTANCSLRAELIL 217

Query: 504 NSN-----GDILRYIGIANDITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDL 557
                   G     + +  +   +K+        A Q D LTGI NR  F   +  ++  
Sbjct: 218 TVEETHILGSPAHLVILKEN---KKQIAMSNHIAASQVDLLTGIYNRHGFTHVIEKMIK- 273

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
               +++   ++ +DID +K IND LG  +GD VL  ++ R+ +LL    ++  L G+ F
Sbjct: 274 ----EDIPFFMLYLDIDNFKNINDSLGHHIGDRVLKEISNRLQKLLPKHAVVGHLGGDEF 329

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           GI+     ++  +   +  +   I  P +L+     +  SIG   + +    +  +L+NA
Sbjct: 330 GILFPKPEHNQVLEQLSEKIINLINQPFDLVHFSKRLACSIGSVQYPADGSDARSLLQNA 389

Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK RG N +  F          R+ ++ +L  A++N+ L + Y P +   D  I
Sbjct: 390 DTAMYEAKDRGRNRLIKFHDQMNKEARMRLWLEIELQKALQNNGLEVWYQPKVSARDFRI 449

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EAL++W HP  G IS + F+ +AE   +I+ +   ++  + + +  W++Q  + P  
Sbjct: 450 NGAEALVRWKHPVEGYISPARFIPVAERSGLIETLGKVVMREVFQTVKEWKNQ-GILPGR 508

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN++ +   + +L E M+ L+  T   P+ I L  +ES VM + E +  +L  ++K+G
Sbjct: 509 IAINLSPEQFGNPQLIEYMERLLKTTQVDPNCITLELTESAVMSDGEHAIQMLDAIKKLG 568

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
            +L++DDFGT  S L+YL   P D +K +   +       K+I I+ ++I + KN+   I
Sbjct: 569 FTLSIDDFGTGYSSLAYLARFPLDELKIDRGFINEIDTLPKQITIIENVINLGKNLNMDI 628

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A+ +        L+ + CD IQ  H   P   + I  LL
Sbjct: 629 VAEGVETRQQAMLLSSLNCDSIQGFHFYKPQPKHEIEALL 668


>gi|291085296|ref|ZP_06352670.2| developmental regulator MorA [Citrobacter youngae ATCC 29220]
 gi|291071533|gb|EFE09642.1| developmental regulator MorA [Citrobacter youngae ATCC 29220]
          Length = 681

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/569 (21%), Positives = 252/569 (44%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               + G+    +     V  +  ++   D + +            GL    + G    +
Sbjct: 121 ARDLAHGLSFAEQ----VVSEANSVIVILDRMGNIQRFNRLCEEYTGLKEREVIGQ-SVF 175

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++   +    R  ++ F        + E  V+    Q  ++       + S  + +  
Sbjct: 176 TLFMSRREAAASRRNIEVFFREGN-SYEVERWVKTCKGQRLFLFRNKFVHNGSGKNEIFL 234

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +    + +  ++ +D
Sbjct: 235 ICSGTDITEERRAQERLRVLANTDSITGLPNRNAIHELIGNAIENA---GDTQVGIVYLD 291

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L S++  I   L    +LAR  G+ F I+L +E +   +  
Sbjct: 292 LDNFKKVNDAYGHMFGDQLLQSVSLAILSCLDDNQLLARFGGDEF-IVLATETSQSALEA 350

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    SIG +           +++NA+ AMY AK  G    
Sbjct: 351 TASRILTRLRQPFRIGLIEVYTGCSIGISLAPQHGQDCESVIRNADTAMYTAKEGGRGQF 410

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 411 CVFSPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 469

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R +  WR +     + + +N++++ L D  L
Sbjct: 470 LIPPLEFISYAEESGLIVPLGRWVILDVVRQVAKWRAKGIN--LRVAVNVSARQLADQTL 527

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++    +    I +  +ES ++ N + +  ++ +  ++G  + LDDFGT  S L
Sbjct: 528 FTALKQVLHDLNFEYCPIDVELTESSLIENEQLALSVIQQFSQLGAQIHLDDFGTGYSSL 587

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 588 SQLARFPLDAIKLDQTFVRDVHKQPISQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 647

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  +   
Sbjct: 648 KNGVNERQGFLFAKPMPAAAFERWYRRHL 676


>gi|300697410|ref|YP_003748071.1| signal transduction eal-ggdef domains transmembrane protein
           [Ralstonia solanacearum CFBP2957]
 gi|299074134|emb|CBJ53679.1| putative signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum CFBP2957]
          Length = 663

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 219/456 (48%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F +RL   L  +         ++++D+D +K +ND L
Sbjct: 190 QAEAHLDYLAHVDSVTELPNRHAFNERLQDALRRTGQTG--AIGLLLLDLDNFKVVNDTL 247

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILI--------SENNSLKIAD 632
           G   GD +L  + RR+ E+++      +L R+ G+ F +I          ++    +   
Sbjct: 248 GHGNGDRLLRQVARRLNEVIEQANARAVLCRIGGDEFAVIAELSRRASTGTDEAVEQSNA 307

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L   +I VTAS+G + +         + +NA+ AMY+AK+RG N  
Sbjct: 308 LANRVLAALAAPFALDLHQIYVTASVGVSLYPHDAGDVQSLTRNADAAMYYAKNRGKNAA 367

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII----------RLMDEEIVGLEA 740
             F     +  R  +  + DL  A+E+ EL LVY P I           +    + G+EA
Sbjct: 368 ACFTAEMDQQARRRLRVESDLRRALEHEELLLVYQPQIRLGALAADASHVCSAHVHGVEA 427

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  +  ++L    R    W  +     + + +N+
Sbjct: 428 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGQWVLRTACRQAAQWLREGRAT-LRVAVNL 486

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D  L E +  ++ +T   P  ++L  +ESV+M + + +   L  L   G++L++
Sbjct: 487 SPRQTRDPALVENVLGILRETGLPPHLLELEITESVLMEDIDANIKQLEALHAAGVNLSI 546

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K + S +        AI  ++I MA N+   ++A+ +  
Sbjct: 547 DDFGTGYSSLAYLQRFPIHKLKIDRSFVQRMPGDGEAIAGAVIAMAHNLRMQVVAEGVEH 606

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L   GCD  Q    + PL  + ++  L+ +
Sbjct: 607 AGQLAWLRAAGCDLGQGYLFSRPLYADQLMSWLRRQ 642


>gi|326388698|ref|ZP_08210291.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206949|gb|EGD57773.1| diguanylate cyclase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 590

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 142/553 (25%), Positives = 246/553 (44%), Gaps = 15/553 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
              A+  +  IV   D      +       I G     + G   R     IH  DR  +R
Sbjct: 37  YKEALDEAA-IVAMTDPDGTITSVNKKFCEISGYREHELIGANHRLLRSGIH--DRAFWR 93

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               +    R          RA     +W+   I P  ++ G I  Y  I  DIT QK +
Sbjct: 94  DFYQTI--TRGHVWHGNICNRAKSGHHYWVDTTIVPHKDATGRIHSYTAIRFDITPQKVA 151

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D LTG+PNR+ FL+ L ++ D  A +      + ++DID +K +ND LG 
Sbjct: 152 EERLWKLANTDPLTGLPNRRRFLENLQSLTDTGAENG---IILGLMDIDNFKGLNDSLGH 208

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD VL  +  RI E L+  DI+ARL G+ F +IL    ++ +  +    +  +++  I
Sbjct: 209 TVGDHVLQHVANRIRETLEAEDIVARLGGDEFALILRHCASNTEAEERIARIEDALSELI 268

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L      V+AS+G   +     T++E++K+A++A+Y AK  G N  E F  S       
Sbjct: 269 PLGRDSRRVSASLGLTRFPEGGATANELMKHADIALYKAKANGRNRTEFFTDSMREEVIR 328

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +      A+ N+EL + Y P++ L  +    +EAL++W HP+ G +   +FM    +
Sbjct: 329 HTELLHRFENALRNNELEVHYQPVMPLTRQAPFKMEALLRWRHPEQGLLYPPQFMDALLD 388

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +    +  +LE + RD+  +      P + + IN    D         +   I     
Sbjct: 389 EGLATMADFHVLETVLRDLRRFHADGARPQM-VTINATMGDFRSPHFIARILTAIEDGEI 447

Query: 824 SPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +P+ + +  +E +++ +        + +L   GI    DDFGT  + L  L  +P D +K
Sbjct: 448 APANLCVEITEGMILDDRSSVARAGIEKLHAHGILTAFDDFGTGYASLRDLRDLPVDFIK 507

Query: 883 FNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    +     AI++++I +A ++   ++A+ +     +  L   GCD IQ   +
Sbjct: 508 IDKSFIVSLTTDAADRAIVQTVIELAHHLGKRVVAEGVDDPAKLAILREFGCDSIQGFLI 567

Query: 941 ASPLGFNSILKLL 953
           +  L  ++I + L
Sbjct: 568 SPALPLDAIRQFL 580


>gi|313108659|ref|ZP_07794658.1| hypothetical protein PA39016_001400021 [Pseudomonas aeruginosa
           39016]
 gi|310881160|gb|EFQ39754.1| hypothetical protein PA39016_001400021 [Pseudomonas aeruginosa
           39016]
          Length = 726

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 227/437 (51%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   +   A  D+LTG+ NR +F +     L+           VM +D+D +K+IND L
Sbjct: 279 HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG-LAVMFLDLDHFKRINDSL 337

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  ++ RI  +L+  D++AR +G+ F  +L       +    +  + + +  
Sbjct: 338 GHDSGDELLKIVSERIRSVLRDSDVVARFAGDEF-CVLADLTQDHEAHILSQRLMQKMKE 396

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           PI L  R + +TAS+G + + +      E+LKNA LA++ +K  G N+ + F        
Sbjct: 397 PIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQSKACGRNNAQFFSRQLLVRA 456

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL++W HP  G +    F+ +A
Sbjct: 457 TQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALVRWRHPTQGLLGPDRFIGLA 516

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   MI  ++ ++L R  RD+ S    A    + + +N  + +L    L + ++  + + 
Sbjct: 517 EANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCASNLGRASLVDEVRHALEQA 575

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   ++L  +E  +M N +++  LL RLR++G+SL++DDFGT  S L+YL  +P D +
Sbjct: 576 GLAARFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDDFGTGYSSLAYLRRLPLDAL 635

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +++ + I ++II MA+ +   ++A+ +     +  L    C+ +Q   
Sbjct: 636 KVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVETPQQLAFLRENHCELVQGYL 695

Query: 940 VASPLGFNSILKLLKER 956
            + PL   ++ + L+  
Sbjct: 696 FSRPLPLAALEEFLRAY 712


>gi|295097752|emb|CBK86842.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 694

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 119/432 (27%), Positives = 211/432 (48%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LT +PNR    DRL   +  +   +     +M +D+D +K +ND  
Sbjct: 252 EANRELAQLALHDTLTRLPNRILLEDRLDQAISKADR-EGSPFALMFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +LV++T+R+   LK    LAR+ G+ F  +L         A  A ++ + I  
Sbjct: 311 GHDVGDKLLVAVTQRLLLQLKGQYTLARIGGDEFV-LLAETATPDDAASLANSLVRVIDS 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P +L   E+ VT SIG A +     T  E++ NA+ AMYH KH G N    F+ S     
Sbjct: 370 PFHLDPYELMVTLSIGIALYPHDGKTDRELMFNADAAMYHTKHMGRNGYHFFQPSMNTLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +  DL  A++ +EL L+Y P        ++G EAL++W HPK G +S   F+ +A
Sbjct: 430 QTHLQLMNDLWQAIDRNELRLLYQPKFHAPAGPVLGFEALLRWQHPKQGLLSPDLFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIIPIGNWVIDEACRQLREWHLQ-GHTDWSMAVNLSTLQFEQPSLVKTVLDCLTRH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M NP+ S  +L  L   G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SVPPGMLILEVTETTAMNNPDESVRVLTALTDAGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +   +   I+ +I+ +AK +   ++A+ +        LT +GC+ +Q   
Sbjct: 609 KIDRAFVKELSGESEDATIVSAIVALAKTLNLKVVAEGVETAAQQTFLTELGCNTLQGYL 668

Query: 940 VASPLGFNSILK 951
           +  P+   +I++
Sbjct: 669 LGKPITAQAIME 680


>gi|289208450|ref|YP_003460516.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288944081|gb|ADC71780.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 649

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 235/457 (51%), Gaps = 16/457 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE  +S E +   +  D+LT +PNR  F DRL+  +      D+    ++++D+D +K+
Sbjct: 195 ITE-HQSRELLHHQS-HDSLTNLPNRMLFSDRLSQAIHRHQGTDH-HIALILLDLDNFKR 251

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF---------PDILARLSGNRFGIILISENNSLK 629
           +ND LG   GD+++  + + +G+LL              L+RL G+ FGI++        
Sbjct: 252 LNDSLGHRAGDELIRKVAQDLGKLLDRSRDRSGRPLRATLSRLGGDEFGILVEDLQGLEG 311

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + ++ A+   + +R +  +AS G A +      S  +L NA+ AMY AK RG 
Sbjct: 312 CVRLVTDVVRTTAVERTIFDRPVVTSASCGIAVFPYDGEDSDVLLSNADAAMYEAKQRGR 371

Query: 690 NHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    +    +S       ++++L  A+E  +L L Y P + L   +I+G EALI+W HP
Sbjct: 372 NGFRFYTQDLNSRTFHHFELEKELGTAIEQDQLVLHYQPKVDLHTGDILGAEALIRWQHP 431

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G +  S F+ +AE++ +I+AI  ++L ++ RD+     Q       + IN++++ L  
Sbjct: 432 KLGLLPPSHFIELAEDMTLIEAIGEWVLRQVCRDLKRLPSQGRDHGFRVAINVSARQLRQ 491

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L     A++     +P  I+L  +E+ +M +P+ +  + GRLR+IG+ L +DDFGT  
Sbjct: 492 PDLAGDFHAILQAANVAPECIELELTETTIMDDPKGAARMFGRLREIGMRLAVDDFGTGH 551

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + L  L  +P DT+K + S +     +     I+++I+ MA  +   IIA+ +  E   +
Sbjct: 552 ASLIQLKKLPADTLKIDRSFVQDLERSNSDARIVQAIVQMAHTLGLNIIAEGVETERQAE 611

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            L   GC+  Q    A P+ FN    LL+++  L + 
Sbjct: 612 ILREFGCNEAQGYFFARPMAFNDFHALLQDQARLPRT 648


>gi|331016833|gb|EGH96889.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 818

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 128/596 (21%), Positives = 258/596 (43%), Gaps = 18/596 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLMAVNLFTAVVLILLALLRVRRLIVQRRLFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+    V   P    +    S    G P+      +  ND+ +  T++D  V  +    
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDSSTLIDQIVTGKLKGG 320

Query: 480 QYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + + ++  D     + +   P+  + G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SADSKLIQRLDGSTVSVALVGTPIY-TEGVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD S+T  +    +M +D+D++K +ND  G A GD++L  L + 
Sbjct: 380 TGLVNRSEFERRLQQVLDDSSTGSHC---LMFLDLDQFKLVNDTGGHAAGDELLRQLCQA 436

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+         D A A+R+ +        +R    T S
Sbjct: 437 LPQGLRDSDTLARLGGDEFGVLLVDCTT-STAHDIAEALREIVQGLHFMWKDRPFMTTVS 495

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  T    L  A++A Y AK +G N V+ + V       R   +   + L +
Sbjct: 496 IGLVHLGDTPATLEGSLSAADMACYMAKEKGRNRVQVYSVDDLTLSMRFGEMAWIQRLHM 555

Query: 714 AVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  + D   E+  +E L++        +    F+  AE   ++  ++
Sbjct: 556 AMDENRFCLYAQEIASIKDQGNEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 615

Query: 772 LFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            ++++ + + I   +       P     IN++   + D+   E ++        +P  I 
Sbjct: 616 RWVVQNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFKTFAVAPEMIC 675

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 676 FEITETSAIADLDSAIRFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 735

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   +A P
Sbjct: 736 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQVESALQEMGVDFAQGYLIARP 791


>gi|163758908|ref|ZP_02165995.1| hypothetical protein HPDFL43_15832 [Hoeflea phototrophica DFL-43]
 gi|162284198|gb|EDQ34482.1| hypothetical protein HPDFL43_15832 [Hoeflea phototrophica DFL-43]
          Length = 770

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 141/693 (20%), Positives = 288/693 (41%), Gaps = 40/693 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYP-MVTASIARITLASIVLYYTYFIIYHGMK 332
               W  +      +G   + I+   +        A +  I++    +       +    
Sbjct: 84  DTLHWERRYVAGPVAGALVLGIMCAYALVISQDPFAELVSISITLASMISVVGRNFGSKL 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
             +  ++++ A + +   F+ L      R    I+   L+  L L    +   V   +  
Sbjct: 144 NVD--MMILAACLPLMAGFLLL------RDPYMIVMAMLLLPLFLTTRDMANGVRDFLFN 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           T    +      ER   A+      +   D              I  L S          
Sbjct: 196 TVIAERKTAEIAERFDTALNNMSHGLIMLDGQGRIEVINHKAREIFELDSTMNLRGRALR 255

Query: 453 LPY--------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                      I   +     T L+  V  +      + R     +   W+    R   +
Sbjct: 256 AALRLRARNGSIPRENLIKISTELEKLVSGK------DVRSLIKFDDKVWLEFTSRQRRS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +       + I  D+T + +  E IL  A  DNLTG+PNR  F +++   L LS      
Sbjct: 310 N-----GVVLIFEDVTSRIEQEERILHMARFDNLTGLPNRSWFREKVD--LKLSKQKCER 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++V+DID +K +ND +G   GD +L ++  R+  + +   +++R  G+ F + +   
Sbjct: 363 NVALVVLDIDDFKHVNDTMGHVSGDKLLSAVAARLRSMSRQKLVVSRFGGDEFVLFVPDI 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   + +    +  +++    +   ++ +  S G A   +      +M   A+LA+Y A
Sbjct: 423 ADEADLRETMNQVLDTLSGTYVIDRHKLFINFSAGVAMSRADTAQIEDMHIQADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K     +   F     R       +K DL  A++   L L Y P+       IVG EAL 
Sbjct: 483 KRHEKENWFLFEQEMDREYSRRQRLKTDLRDAIQTQSLTLAYQPMFNPEGTRIVGAEALS 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP++G +S + ++ +AEE+ ++  ++  ++ +  R  + W ++     +F+ +N+++
Sbjct: 543 RWNHPEFGPVSPAVYISLAEEMGIVGELSRSVIVQAVRTCMEWPEE-----MFVSVNLSA 597

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL D  +   +   +S++  +P R+++  +E  +M +   +R +L  LRK+G+++ +DD
Sbjct: 598 HDLGDRAIVSVISDALSESGLAPERLQVEVTEGGLMKDLATARAVLSELRKMGMTIAIDD 657

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P + VK + S ++      +++ +LR ++ +A+ +   II + +  
Sbjct: 658 FGTGYSSLSYLDLLPLNKVKIDRSFVSNLTEDPRKLKLLRGVVNLARELGLDIIVEGVET 717

Query: 921 EIDIKELTRMGC-DYIQDSHVASPLGFNSILKL 952
           E  +  +    C D IQ     +P+  ++  +L
Sbjct: 718 EAQLTLIRDNNCADLIQGYIFGAPMLSSAFEEL 750


>gi|297583667|ref|YP_003699447.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297142124|gb|ADH98881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 719

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 133/570 (23%), Positives = 242/570 (42%), Gaps = 22/570 (3%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT----TPDIATILGLASGSMHGPI 449
               Q            +    ++V   +   D          ++   L L      G +
Sbjct: 154 RVEEQERLRIERSYESVLNNLDNLVMRIEKDTDGRYIVMLIGGNMLQKLNLTGKVPEGTL 213

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +  +++  F   LD          +  ++          + + +  +S   G++
Sbjct: 214 VEDALQLTADEKRQFIRQLDQVFAGSGAGFELHYKNWH-------LYVNLAAISGEAGEV 266

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                  +DIT  K++   +   AFQD LTG+PNR+ F   +  ++       +    ++
Sbjct: 267 QAVTASVSDITALKQTEMAMRDMAFQDPLTGLPNRRRFELDVLNLIAE-RRGTDQGIGML 325

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI---LARLSGNRFGIILISENN 626
           ++D+D++K IND LG A GD  LV    R+            L  L G+ F  ++ +   
Sbjct: 326 LVDLDQFKNINDSLGHATGDRFLVIAAERMKLDPVDESFRYELYHLGGDEFIYLISNYL- 384

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +  F   + +    P    + EI +  SIG   +     +  +M+K  ++AM  AK 
Sbjct: 385 PGTVQPFIRQIIRVFQHPFPYYDGEIHLQVSIGATFFPEYADSGEQMMKQVDMAMLAAKK 444

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQ 743
            GG     F     +     V+I+ +L  A+    E  L Y P+    + E    EALI+
Sbjct: 445 FGGQSYRFFTDDMQKDFDHYVLIERELRKALNGCEEFELYYQPLYIAGESEPSTAEALIR 504

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G IS  EF+ +AE+  +I  +  ++L + A+D+  W          I +NI+S+
Sbjct: 505 WHHPERGLISPGEFIPVAEQAGLIVPLGQWILMQAAKDVKKWSRYTGH-NRQISVNISSQ 563

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L        ++ ++ K   SP +I+L  +E+++M   + + + L  LRK G ++ +DDF
Sbjct: 564 QLQLPNFSSQLEEILLKEGVSPEQIQLEITENILMEKRKENVVKLVGLRKKGFTIAIDDF 623

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P D +K + S +      E   AI+++ I M  N+   +IA+ +   
Sbjct: 624 GTGYSSLSYLKSFPVDVLKVDQSFVKDLPNDEADKAIVQATIQMGINLGLHMIAEGVESA 683

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                L ++GC  +Q  + A P  ++  ++
Sbjct: 684 EAAAYLKKIGCHELQGYYFARPAPYDDFIR 713



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 17/217 (7%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +          +  L    + Q+  A   F +G++ D  +   AV  +  I         
Sbjct: 1   MPYRFRNLSEWLTELKTSALHQNTPARTCFDEGLYQDLIQLLDAVDETTLISIVA-PDGR 59

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            +        + G     + G     +   +H      +  +  +    +      E   
Sbjct: 60  ILYVNDRFCDVFGYTRDELVGSEYGMIKSNMHSQ--AFYDEMWSTIRQGK--SWSGEIMN 115

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK--SLEGILCNAFQDNLTGIPN 543
              D   +W+   I P+ N +G +  YI I  DITE K+    E +      +++  + N
Sbjct: 116 AHKDGSKYWLQTAIYPVLNEDGSVKHYIAIRKDITEGKRVEEQERLRIERSYESV--LNN 173

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                  L  ++     D + R  VM+I  +  +K+N
Sbjct: 174 -------LDNLVMRIEKDTDGRYIVMLIGGNMLQKLN 203


>gi|254251770|ref|ZP_04945088.1| hypothetical protein BDAG_00967 [Burkholderia dolosa AUO158]
 gi|124894379|gb|EAY68259.1| hypothetical protein BDAG_00967 [Burkholderia dolosa AUO158]
          Length = 790

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 217/435 (49%), Gaps = 7/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + ++    R  ++ ID+D +K +ND LG 
Sbjct: 339 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPSSLS--RLGLLFIDLDNFKTVNDTLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     L+R+ G+ F +++  ++   +    A A+ +  A P 
Sbjct: 397 NAGDIVLQMTAARLSDAVGDEGSLSRIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPF 456

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 457 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 516

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IA+ 
Sbjct: 517 LMRWEQQLRVALADGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFISIAQS 576

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + +NI+       +L E +   + +T  
Sbjct: 577 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAVNISPVQFWRGDLIETISHTLRETGI 635

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 636 DANRLELEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 695

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    +  +  L+ +G    Q    +
Sbjct: 696 DRSFVQAIPHDRSVCVMVSSIVHLARSLGLTVVVEGTETDEQVAWLSALGEIEAQGFLFS 755

Query: 942 SPLGFNSILKLLKER 956
            P+  ++I  L+   
Sbjct: 756 RPVPADAIPALIARY 770


>gi|71736866|ref|YP_272801.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557419|gb|AAZ36630.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 712

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/615 (19%), Positives = 254/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLSASVDQLRGTQVLDY-IIEPQVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +   +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 EWLESGFYKHYRKADTYRVHDAVLRTAQGTQLPVALSCAALPAEQ---KAMVMTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     +  +L       +    V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVEGMLLR-KEQTDKYLVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGIDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P + + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGKDFSVVYQPQVHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W        + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSRVFAA-DVVLSVCVSPTQFYMPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +ES ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITESSLVHNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +    E R   A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 623 TLKLDRRFVANIVESRREAAMASSIIDLSRNLDMLVIAEGVETPEQYQWLADNGCQVMQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 683 FLIAHPMVPEDALRF 697


>gi|152984602|ref|YP_001347191.1| hypothetical protein PSPA7_1808 [Pseudomonas aeruginosa PA7]
 gi|150959760|gb|ABR81785.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 726

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 155/716 (21%), Positives = 288/716 (40%), Gaps = 50/716 (6%)

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYI--TFSGIACIAILFCMSFYYPMVTASIAR 312
                    + +  +    +  R   +  +I     G    A  F     +    A    
Sbjct: 33  FLVACLAGYTALDMVERVGNSLRHPRRWQWIGAFCLGSGIWATHFVAMLAFHAPVALRYD 92

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF--IWFIGLWMAITKRLD-NDIIQP 369
           + +  + L       Y  M    R    +   +L    I      M  T       +   
Sbjct: 93  LPVTGLSLLIAIAASYLAMYMTARPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQ 152

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIV 424
                L  + +LI        LA   + +G  S   R      SL + G+          
Sbjct: 153 YYQPSLFTLSVLIAIGAAFTALAAVPYLRGRRSARYRYMKLVASLLLAGAI--------- 203

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                         G+A+  +  P    L           +   DS        L     
Sbjct: 204 --------AAMHFTGMAALVLSVPAGTPLEL---------QASADSLRLGWLTGLLASA- 245

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           + A      W   +     + N  +   +       +   +   +   A  D LTG+ NR
Sbjct: 246 IAACGISAAWSEKQRERQLSENSRVNALL------NQLDHAHASLRQLARYDALTGLQNR 299

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            +F +     L            VM +D+D +K+IND LG   GD++L  ++ RI  +L+
Sbjct: 300 TAFNEVFAQHLQNCQLRGKG-LAVMFLDLDHFKRINDSLGHDSGDELLKIVSERIRSVLR 358

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D++AR +G+ F  +L       +    +  + + +  PI L  R + +TASIG + + 
Sbjct: 359 DTDVVARFAGDEF-CVLADLAQDHEAHILSQRLLQKMKEPIALDGRTLVMTASIGVSLYP 417

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYL 722
           +      E+LKNA LA++ +K  G N+ + F        +  + ++E+L  A+ + +L L
Sbjct: 418 NDGEQCEELLKNAGLALHQSKSCGRNNAQFFSRQLLLRATQELQMEEELRQALCDDQLEL 477

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PI+ L D E+  LEAL++W HP  G +    F+ +AE   MI  ++ ++L R  RD+
Sbjct: 478 HYQPILALADGEVHQLEALVRWRHPSQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDL 537

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                 A    + + +N  + +L    L + ++  + +   +   ++L  +E  +M N +
Sbjct: 538 RGLH-LAGHARLRVAVNCCASNLGRASLVDEVRHALEQADLAAHFLELEVTEDALMYNID 596

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
           ++  LL RLR++G+SL++DDFGT  S L+YL  +P D +K + S +     +++ + I +
Sbjct: 597 QTIPLLERLRELGVSLSIDDFGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQ 656

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +II MA+ +   ++A+ +     +  L    C+ +Q    + PL   ++ + L+  
Sbjct: 657 AIIAMAQKLHLKVVAEGVETPQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAY 712


>gi|319787463|ref|YP_004146938.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465975|gb|ADV27707.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 705

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/479 (25%), Positives = 227/479 (47%), Gaps = 12/479 (2%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R  D  ++ + +R    S+  G++ R     ++   +      +   A+ D LTG+ NR 
Sbjct: 230 RIEDGDYN-VQVRASARSDEMGELERAFNRMSESVARH--DRDVRQIAYTDPLTGLTNRL 286

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +F + L   L            ++  DID +K++ND LG   GD  L+    RI   ++ 
Sbjct: 287 AFREDLEQRLSQL-RGSGRELALLFADIDDFKRVNDTLGHEAGDAALLQFATRIRGAVRD 345

Query: 606 P----DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                 ILAR  G+ F I++            A  +   +  P+ +  R++ +  SIG  
Sbjct: 346 HGGDNAILARFGGDEFVILVEGREVRPLATRLAEVLVAELRDPLEIEGRQVFLGTSIGIT 405

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +     ++S ++KN ++AMY AK  G N    +  +   +      ++++L  A E  E
Sbjct: 406 LFPEDASSASGLMKNGDIAMYQAKSAGKNGFRFYSRAMDHAVERRAHMEQELRGAWERGE 465

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + +VY PI R  D  I+G EAL++W HP+ G IS + F+ +AE+  +I  +   +L +  
Sbjct: 466 VSVVYQPIGRTSDGRILGAEALLRWQHPELGTISPAAFIDVAEQSGLIDQLGPRVLRQAC 525

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           +D   W  +    P F+ +N++ + L   EL   +   ++++      + L  +E+ ++ 
Sbjct: 526 QDAAHWARECGGEPPFVSVNVSPRQLRHGELPGIVAECLAESGLPAGCLHLELTETALIS 585

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           +  ++ +LL RL   G+ + LDDFGT  S LS+L  +P D +K + S +         +A
Sbjct: 586 DELQAGVLLTRLHGSGVKVWLDDFGTGFSGLSHLRRVPVDGLKIDRSFIADMQRDPDDLA 645

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  +I+ MA ++  T++A+ +  +     L  +GCD IQ   +  PL    +L  L  R
Sbjct: 646 LTSAIVAMAHSLGITVVAEGVEKQAQRDLLAGLGCDLIQGYWLGHPLAAGELLARLSAR 704


>gi|320333630|ref|YP_004170341.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Deinococcus maricopensis DSM 21211]
 gi|319754919|gb|ADV66676.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Deinococcus maricopensis DSM 21211]
          Length = 874

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 205/433 (47%), Gaps = 11/433 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      +   A  D LTG+PNR+  L  +   L  +   +     V+++D+D++K++N
Sbjct: 424 ERVTLQTQLTHQATHDPLTGLPNRRHLLTLIEGALARADR-EGTGVAVLLLDLDRFKRLN 482

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD  L  +  R+  +++  D +ARL G+ F I+L   +   + + F   +   
Sbjct: 483 DTLGHAAGDAFLRVIAERLRGVVRSSDHIARLGGDEFVIVLEGLSAPDQASVFTSRLLDV 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI L E++   TAS+G + +     T  E+L+ A+LAMY AKH G N   ++  S+ 
Sbjct: 543 LRAPITLGEQQFVTTASVGISLFPQDARTPEELLRTADLAMYTAKHDGKNGHAAYAPSAH 602

Query: 701 --RSDRVMIKEDLCLA----VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                R+ ++  L  A     +   L+L Y P +          EAL++W HP  G +S 
Sbjct: 603 DAALHRLRLESALRAALQGDPDAGTLHLAYQPQVDFRTGRATAAEALLRWTHPTLGAVSP 662

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +  + +AE+  +I  +  ++L    +   +W       P+ + +N++++     +  E +
Sbjct: 663 AAIIPVAEDSGLILPLGQWVLTHATQQAAAWHASG--LPVRVAVNVSARQFAQADFPEVV 720

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q  +       S ++L  +ES++M +   +   L  L  +G+ + +DDFGT  S LSYL 
Sbjct: 721 QTALHGAGLPASALELEVTESLLMRDMAATSAHLRDLAALGVRVAVDDFGTGYSSLSYLH 780

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +     T +   I+ ++I +A+ +    +A+ +        L  +G 
Sbjct: 781 QLPIHALKVDQSFVRDLARTPQARGIVDTVITLARRLGLESVAEGVETPEQAALLRDLGA 840

Query: 933 DYIQDSHVASPLG 945
            + Q    A P  
Sbjct: 841 TFAQGYLFARPTP 853


>gi|161524101|ref|YP_001579113.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           ATCC 17616]
 gi|189351142|ref|YP_001946770.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|221199545|ref|ZP_03572589.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD2M]
 gi|221205555|ref|ZP_03578570.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|160341530|gb|ABX14616.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           ATCC 17616]
 gi|189335164|dbj|BAG44234.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|221174393|gb|EEE06825.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Burkholderia multivorans CGD2]
 gi|221180830|gb|EEE13233.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD2M]
          Length = 778

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 217/434 (50%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + ++    R  ++ ID+D +K +ND LG 
Sbjct: 327 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPSSLS--RLGLLFIDLDNFKTVNDTLGH 384

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +  A P 
Sbjct: 385 NAGDIVLQMTASRLSDAVGDEGTLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPF 444

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 445 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 504

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 505 LMRWEQQLRVALAEGQLFLAYQPKIDLAHRTITGFEALARWDHPEHGIISANEFISIAES 564

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++    R I  WR++ +   + + +NI+       +L E +   + +T  
Sbjct: 565 TGLIVPIGDFVIRTACRQIARWREEGHDT-LTLAVNISPVQFWRGDLIETISGALRETGI 623

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 624 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 683

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    +  I  L+ +G    Q    +
Sbjct: 684 DRSFVQAIPHDRSVCVMVASIVHLARSLGLTVVVEGTETDEQIAWLSALGEIEAQGFLFS 743

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 744 RPVPADAIPALIAR 757


>gi|66043776|ref|YP_233617.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254483|gb|AAY35579.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 719

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 119/615 (19%), Positives = 258/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 96  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 155

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 156 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDY-IIEPKVG 214

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +              ++  +R A      + +    +          +    D++ 
Sbjct: 215 HWLDSGFYQHYRKSDTYRVHDAILRTAQGTQLPVALSCAALPAEQ---KAMVLTVLDMSV 271

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     + ++L  +   D     V+ +D+D +K+IND
Sbjct: 272 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKY-LVVLFMDLDGFKQIND 330

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 331 TLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 390

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   EIT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 391 SGRRQVDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 450

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P I + D  + G EAL++W HP  G +  + F+ 
Sbjct: 451 RARSRLMLEESVRTAIDGRDFSVVYQPQIHVADGRLRGFEALLRWQHPAVGEVPPALFIP 510

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W      P + + + ++        L   ++  + 
Sbjct: 511 LLEETRLINRLGSWIFDQGAEQRQAWSHIFA-PDMVLSVCVSPTQFCLPNLASELKRAMD 569

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E+ ++ N   S   L  L ++G+ + LDDFGT    LS+L  +  D
Sbjct: 570 RFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLD 629

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +     +++  A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 630 TLKLDRRFVANIAGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVMQG 689

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 690 FLIAHPMLPEDALRF 704


>gi|149910458|ref|ZP_01899099.1| sensory box protein [Moritella sp. PE36]
 gi|149806517|gb|EDM66488.1| sensory box protein [Moritella sp. PE36]
          Length = 627

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 224/441 (50%), Gaps = 11/441 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S E     AF D+LTG+ NR+     + T   L+ T+  +   ++ ID+D +K IND L
Sbjct: 186 QSQEEFHRLAFFDSLTGLANRRLLNQTIETQYQLAKTNQ-VVGALLFIDLDFFKAINDSL 244

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMR 638
           G AVGD +LV +  R+ E+ +  D +ARL G+ F I+L   +             A  + 
Sbjct: 245 GHAVGDGILVEVAERLKEIPRPEDFIARLGGDEFVILLPDLSENPMHAEQHANLLAEQLI 304

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I+ P     + + + ASIG   + S    + ++LK A+ AMY AK  G   V  F V 
Sbjct: 305 ERISQPYLYKGQALYIGASIGVTLFPSKDQHADDLLKQADTAMYQAKSNGRKKVYFFDVK 364

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R     +     L  A+  +EL+L Y P   + + +I+G+EAL++W       IS +E
Sbjct: 365 MQRKADKRLHIYNCLKSAIAKNELFLHYQPQHMVQNGDIIGVEALVRWHLGGKQQISPAE 424

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAEE  +I  I +++L+   R  + W+ Q    P  + +N++++   DN   + +  
Sbjct: 425 FIPIAEETDLIIDIGIWVLQAACRQFVEWQLQGVNVP-QLSVNVSTRQFHDNNFVDSVLM 483

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P ++ L  +ESVV+ + E +   +  L+ IG+S  +DDFG   S LSYL  +
Sbjct: 484 VLDETGMDPMQLNLEITESVVIEHAEDAIRKMTDLKNIGVSFAVDDFGVGYSSLSYLKRL 543

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + S + G       +AI+ +++ MAK++   + A+ +     ++ L R  C +
Sbjct: 544 PANELKIDRSFIQGIPYNVSDMAIVEAVLAMAKHMGFNVTAEGVESRQQLEFLQRQQCSF 603

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q  + + PL   ++   ++ 
Sbjct: 604 YQGFYASKPLTGENLALYVRR 624


>gi|307944917|ref|ZP_07660254.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
 gi|307771841|gb|EFO31065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
          Length = 720

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 132/519 (25%), Positives = 231/519 (44%), Gaps = 50/519 (9%)

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE---- 521
              D  V  +   +  +        +    I    P    +G ++    +  D +E    
Sbjct: 149 AAFDGLVANKSPFVSQDI---FPTGEVKPYIFVSIPEFGVDGKLIGGFVVLTDQSELLSK 205

Query: 522 ---------------------------------QKKSLEGILCNAFQDNLTGIPNRQSFL 548
                                            Q K    I   A  D LTG+PNR  + 
Sbjct: 206 VGNIPLSGIILIGAMCGISILFAGGIIWMRFRDQVKVNRDIQFLAHHDTLTGLPNRAVYN 265

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            +L   L LS    +     M+ID+DK+K+IND  G   GD  L  +  R+    K   +
Sbjct: 266 AKLNEGLRLSQAKASNMAA-MLIDVDKFKEINDTYGHGTGDIFLQIIADRLRHTFKDH-L 323

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARLSG+ F +++ S ++  ++   A AM  +   P  +  +EI ++ SIG A  +    
Sbjct: 324 VARLSGDEFAVMVTSYSDVARLTKLAAAMIAATKAPCVIDGKEIQISLSIGIARASDGSW 383

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
            +S +L  A+LA+Y AKH G +    +        +    I+ DL  A++  +  LV+ P
Sbjct: 384 RASRLLHCADLALYAAKHSGRSTFVWYSPEMDADAQRRKEIEADLVKALKFDQFQLVFQP 443

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
              L+D ++ G E+LI+W+HP  G IS   F+ IAE+  +I+ I  ++L     +  +W 
Sbjct: 444 QYSLIDNQLKGYESLIRWEHPTKGLISPDIFIPIAEDTGLIQYIGDWVLNHACNEAAAWE 503

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  I I +N+++   L  E  + ++  +  +   P R+++  +ES+++ NP+    
Sbjct: 504 ----DKSIKIAVNVSAAQFLAGETDQKVRKALETSGLEPERLEVEITESLLISNPKAVVE 559

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIP 904
            L ++  +G+S+ +DDFGT  S LSYL   PFD +K + S +    E+    A++ +II 
Sbjct: 560 TLQKIHAMGVSIAMDDFGTGYSSLSYLSRFPFDKIKIDRSFIQNLGEEPSLDAVVTAIIG 619

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +  +++  I A+ +  E  +  L   GC  +Q      P
Sbjct: 620 LGHSLDVQITAEGVETEEQVILLRSAGCHLVQGFLFGRP 658


>gi|254523507|ref|ZP_05135562.1| ggdef family protein [Stenotrophomonas sp. SKA14]
 gi|219721098|gb|EED39623.1| ggdef family protein [Stenotrophomonas sp. SKA14]
          Length = 701

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 227/460 (49%), Gaps = 11/460 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G+++R      D   +      +   A+ D LTG+ NR +F + L   L ++A   N
Sbjct: 243 DEVGELVRGFARMRDAIARH--DREVRHMAYTDALTGLTNRLAFREALDHRL-MAARASN 299

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGI 619
            R  ++  DID +K++ND LG   GD+ L+   +RIG  +        +LAR  G+ F I
Sbjct: 300 HRLGLLFADIDDFKRVNDTLGHEAGDEALLQFAQRIGRAVTEAGGDEALLARFGGDEFVI 359

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++   + +      A  + + +  P+ +  RE+ +  SIG   +      ++ +LKN ++
Sbjct: 360 LVGDGDVAANARLLAEVLVRELGKPLVVQGRELFLGTSIGVTLFPDDAADATTLLKNGDI 419

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N    +  +   +      ++++L  A E  EL L Y PI R+ D  +VG
Sbjct: 420 AMYQAKMAGKNCYRYYSRAMDHAVERRVHMEQELRGAWERGELRLAYQPIFRMRDRRMVG 479

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +E L++W HP  G I  S F+ +AE+  +I+ I   +L     +   W        +F+ 
Sbjct: 480 VEVLLRWQHPTLGTIPPSVFIEVAEQSGLIEIIGPKVLRAACMEAAQWPRGVAGDDLFVS 539

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ + L   EL   +   + ++    SR+ L  +E+ V+G+   +  LL +L + G+ 
Sbjct: 540 VNVSPRQLRGGELPALVAQCLHESGLPASRLHLELTETAVIGDEMVAAQLLDKLHRTGVK 599

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA  +  T++A
Sbjct: 600 VWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADMQRDPDDLALTTAIIAMAHALGITVVA 659

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + I  +   + L + GCD  Q   ++ P+    ++++++ 
Sbjct: 660 EGIEQQAQFELLAQRGCDLGQGYWLSHPVTATEVVRMIES 699


>gi|207724015|ref|YP_002254413.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206589223|emb|CAQ36185.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 776

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/753 (17%), Positives = 280/753 (37%), Gaps = 57/753 (7%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA---LSSSLIIFLFMYL 273
           M     +  W V                +    L +W          +           +
Sbjct: 38  MYFILISSTWAVAI----------TYRAITPAWLTVWIPLLLTLACAIRVLHWWPSRRIV 87

Query: 274 HWN----RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
                  R   +   +               F++             +I +    F + H
Sbjct: 88  PTPELALRALKRTNRLASIMAVSFTAWSLALFHHGDPYTRSYLAFYMAITVIACIFCLMH 147

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
                    +++    + F    G    I   ++  ++   L     L+++++ +     
Sbjct: 148 LRSAAITVTVIVNGAFIAFFASTGQPTFIAIAINMALVSVGL-----LVILMVNYRDFTA 202

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTT-------PDIATILGLA 441
           ++     ++    +  R    +      V   +     +             IA +L + 
Sbjct: 203 MVNAQTEARRREEEQGRLLHMIDDMPVAVMTVEPDTFAINYVNNTSRRLIDRIAHLLPID 262

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           + ++ G   +   + H   +        +     R RL  E            + +++  
Sbjct: 263 ADTLLGTSIDVF-HTHPEHQRRLLADPANLPHNARIRLGPEV-----------LDLKVSA 310

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +  ++G  +  +     +T++ ++   I   A  D LTG+ NR +F ++L   L++    
Sbjct: 311 VRANDGSYIGPMLTWALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLEV---- 366

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGII 620
              R  ++ ID+D +K +ND  G   GD +L  + +R+          +ARL G+ F ++
Sbjct: 367 PGARLGLLYIDLDGFKLVNDTKGHRAGDALLERVAQRLRAVCDCPGVAIARLGGDEFAVL 426

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +  ++     A  A  +           +  + + ASIG A   +    +  +L  A++A
Sbjct: 427 VPHDDADRAAALAAELIEALGVPSPLGADPSVRIGASIGIALAPAHGRDTENLLARADIA 486

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVG 737
           +Y AK  G      F   + +    R  ++  L  A+E    L++ Y PI+ +   +I  
Sbjct: 487 LYAAKAAGKGLARLFCAEMETRIQARARLEAQLRTALERQDRLFVFYQPIVDVETGKITA 546

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W H + G +   EF+ IAE+  +I  +  F+L R  R+   W D        + 
Sbjct: 547 REALVRWHHAERGWVPPDEFVPIAEQSGLIDPLGRFVLHRACREATRWED-----GARVA 601

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   L    L + ++A +  +  +P R+++  +E+ ++ N   S   L +L  +G+ 
Sbjct: 602 VNVSPMQLGKGTLAQTVRAALVDSGLAPDRLEIEVTETALIQNEAESFGDLRQLYDMGVR 661

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S L++L   PFD +K + S +           ++++I  + + +  T +A
Sbjct: 662 VALDDFGTGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVKAIADLGRQLGVTTVA 721

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + +     ++ +   GC   Q      P   + 
Sbjct: 722 EGVETPAHVRRIREAGCTEAQGYFYGRPAPSDE 754


>gi|149907883|ref|ZP_01896551.1| hypothetical protein PE36_19485 [Moritella sp. PE36]
 gi|149808889|gb|EDM68820.1| hypothetical protein PE36_19485 [Moritella sp. PE36]
          Length = 843

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 229/441 (51%), Gaps = 6/441 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I+ D +E  K  E +   A  D+LT +PNR     ++   + LS  + N +  +M +D+D
Sbjct: 388 ISTDFSELIKVKEQLQYQALHDSLTKLPNRILLDIQIEQGIALSKKN-NTKLALMFVDLD 446

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KKIND+ G +VGD++L +L     ++L   D +AR  G+ F       +N       A
Sbjct: 447 DFKKINDLYGHSVGDELLATLGTIFNQMLSAGDSVARFGGDEFIFCFPELDNLADAERKA 506

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + +       +  + I  + SIG A +      S +++  A++ +Y +K +   +   
Sbjct: 507 KRISEIFKQHFVINGKSIYSSCSIGVAMYPDDGDASEQLISKADIVLYKSKSQQKGNFLF 566

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    ++     ++++ +L LA+ N+EL ++Y P I     +I G+EAL++W +PK G++
Sbjct: 567 FNDTINTQVQRDLLLESELHLAIANNELDVLYQPQIDAATGQIYGVEALVRWYNPKLGHV 626

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AE++ +I  I  F++++  +DI+ + ++ +   + + INI+ K L++ +   
Sbjct: 627 SPVEFIQVAEDVGIINDIGNFVIKKSLQDILQFNNR-SNTQLHLSINISPKQLMEPDFVS 685

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L  +       I L  +E+V++ +  + + +L  +R  G+ L+LDDFGT  S LSY
Sbjct: 686 NVINLTHEMAVDNRLITLEITENVLINDLAKVQPVLQSIRNSGMKLSLDDFGTGYSSLSY 745

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S +      ++  +++++II + +  + T+IA+ +  +     L   
Sbjct: 746 LSNLPIDEIKIDRSFIDKLLTNDQSESLVKTIIAIGQFCDLTVIAEGVETKEQYDHLRHY 805

Query: 931 GCDYIQDSHVASPLGFNSILK 951
            CD +Q  +   PL   +++ 
Sbjct: 806 RCDLVQGYYFDRPLSLAALIA 826


>gi|221211619|ref|ZP_03584598.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD1]
 gi|221168980|gb|EEE01448.1| diguanylate cyclase/phosphodiesterase [Burkholderia multivorans
           CGD1]
          Length = 778

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 217/434 (50%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + ++    R  ++ ID+D +K +ND LG 
Sbjct: 327 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPSSLS--RLGLLFIDLDNFKTVNDTLGH 384

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +  A P 
Sbjct: 385 NAGDIVLQMTASRLSDAVGDEGTLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFAEPF 444

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 445 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 504

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 505 LMRWEQQLRVALAEGQLFLAYQPKIDLAHRTITGFEALARWDHPEHGIISANEFISIAES 564

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++    R I  WR++ +   + + +NI+       +L E +   + +T  
Sbjct: 565 TGLIVPIGDFVIRTACRQIARWREEGHDT-LTLAVNISPVQFWRGDLIETISGALRETGI 623

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 624 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 683

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    +  I  L+ +G    Q    +
Sbjct: 684 DRSFVQAIPHDRSVCVMVASIVHLARSLGLTVVVEGTETDEQIAWLSALGEIEAQGFLFS 743

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 744 RPVPADAIPALIAR 757


>gi|115352441|ref|YP_774280.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
 gi|115282429|gb|ABI87946.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria AMMD]
          Length = 779

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 386 NAGDIVLQMTASRLSDAVGDEGSLARIGGDEFVVVMKGDDIERRAVRLAEAIIRMFGEPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 DVRGSSFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 506 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFISIAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD  +   + + INI+       +L E +   +  T  
Sbjct: 566 TGLIVPIGDFVIRTACEQIARWRDDGHDT-LTLAINISPVQFWRGDLIETISQALQDTGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 625 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 685 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLSALGEIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 745 RPVPADAIPALIAR 758


>gi|289207715|ref|YP_003459781.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Thioalkalivibrio sp. K90mix]
 gi|288943346|gb|ADC71045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Thioalkalivibrio sp. K90mix]
          Length = 961

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 219/451 (48%), Gaps = 11/451 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +  E I   A+ D LTG+ NR    D LT  LDL+         +++ID+D +K IN
Sbjct: 511 ERLEGEEHIRRLAYHDPLTGLANRTQLHDALTQDLDLA-HHGGQHGGLILIDLDHFKTIN 569

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF-----AI 635
           D LG AVGD VL ++  R+ +      ++ RL G+ F  ++     S +  +      A 
Sbjct: 570 DALGHAVGDTVLAAVADRLRQHAPEQALVVRLGGDEFATLIHPRRASRQAIEATVNDAAH 629

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++  PI L ER  +V AS+G   +  +  TSS+ L++A++A+Y AK  G   V+ +
Sbjct: 630 RLLDALQHPIVLGERTFSVGASLGCVLFPDAGQTSSDALRHADIALYQAKRAGRGGVQFY 689

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           R         R+ I+E L  A+ N E+ L Y P     +  I G EAL++W HP+ G + 
Sbjct: 690 RHALQDEARARLQIEEGLRQALVNREMRLSYQPQFDAQENMI-GAEALLRWTHPELGPVG 748

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ IAEE  +I  I  +++E +  ++  W  +    P  + INI+   L   +    
Sbjct: 749 PALFIPIAEETGLIHPIGTWVVEHVLENLQDWHARGLPLPPRVAINISPWQLARPDFVAQ 808

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  +        +I L  +ES ++ +   +   L  LR+ G+ + LDDFGT  S L+YL
Sbjct: 809 LRERVQAAGLEAGQITLEVTESGLLRDLSDAIGKLRALREFGVQVALDDFGTGYSSLAYL 868

Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K + S +     +    ++ +I+ +  N+   ++A+ +      ++L  +GC
Sbjct: 869 RDLPLDELKIDKSFIDELVDKGEQMLIENILDIGHNMGLRVVAEGVAKPAQRQQLLALGC 928

Query: 933 DYIQDSHVASPLGFNSILKLLKERF-PLVKN 962
            + Q      P+  +     L+    P V+ 
Sbjct: 929 THFQGFLYGQPIAEDEFPAWLERNATPAVQR 959



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/419 (10%), Positives = 110/419 (26%), Gaps = 57/419 (13%)

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
             ++ G+    +    +    +   +    FA   ++L   +I      +  ++ +    
Sbjct: 9   LYLLAGLCLYASASHLLHASHSVRRVEHLLFAAMCLLLAGSAISIALSYQATSIEAYTGP 68

Query: 252 I-WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           +        AL      F+  Y            +  S +  + ++  ++          
Sbjct: 69  MKAYYGLIAALYVLFAAFIARYTETP------ARVLLSVLGILMVVVWVANARQPHGLQW 122

Query: 311 ARITLASIVLYYTYFIIYHGMKGYER----------AVLLIPAWILIFIW---------- 350
             I     V       +   +                V     W L+  W          
Sbjct: 123 TEIAELGSVALPWGETVTRAVGSPSPWFLLGLAGLLLVFGFSLWALVSHWRREGGHLPLI 182

Query: 351 -FIGLWMAITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSDGERQS 408
               L + +   +   +++  ++  + L V   +G  ++  ++      + +     R  
Sbjct: 183 LIGALLLFLLATIQGVLVRLGIIDSIPLSVFGYLGMILVMSLVLHRETQERVRESEHRFR 242

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN--------D 460
             V  +   +                 T+ G      H  ++      H +        D
Sbjct: 243 DLVHQAPMAIEVLTPDGGVRQVNTAWETMHG------HAGVKGMNVLHHPDPIDGHVTED 296

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                      +         +   +A      W+   + P+ N  G++   I +  DIT
Sbjct: 297 IRAAARGARRSIAPFACHAVAD-PAKAPAGS-RWVKGYVYPLKNHRGEVRDIIVMQEDIT 354

Query: 521 EQKKSLEGILCNA---FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             ++  + +   A     D      NRQSF   L   +            +  I++   
Sbjct: 355 LARRGEDALRVIAQGFRAD------NRQSFFQNL---VLRLREVFRADYALAGINVPDL 404


>gi|261342740|ref|ZP_05970598.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315393|gb|EFC54331.1| signaling repeat/GGDEF domain/EAL domain protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 694

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 217/436 (49%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A QD LT +PNR    DRL   +  +  +      +M +D+D +K +ND  
Sbjct: 252 EANRELAQLALQDTLTRLPNRLLLEDRLGQAISKADREGR-HFALMFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +LV++T+R+ + LK    LAR+ G+ F  +L   +     A  A A+ ++I  
Sbjct: 311 GHDVGDKLLVAVTQRLLQPLKGQYTLARIGGDEFV-LLAETDGPDDAASLASALVRAIDS 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P  L   E+ VT SIG A +     T  E++ NA+ AMYH KH G N    F+ S     
Sbjct: 370 PFALEPYELVVTLSIGIALYPHDGKTDRELMFNADAAMYHTKHMGRNGYHFFQPSMNTLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +  DL +AV+ +EL L+Y P        ++G EAL++W HP  G ++   F+ +A
Sbjct: 430 QTHLQLMNDLWMAVDRAELRLLYQPKFHAPAGPVLGFEALLRWQHPTQGLLTPDLFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q +     + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVPIGNWVIDEACRQLRQWHLQGHN-DWSMAVNLSTLQFEQPSLVQTVLDCLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M +P+ S  +L  L   G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 NVPPEMLILEVTETTAMSDPDESVRVLTELTDAGVKASIDDFGTGYSSLLYLKKLPACEL 608

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +   +   I+ +I+ +AK +   ++A+ +  E     LT++GC+ +Q   
Sbjct: 609 KIDRAFVKELSGESEDATIVSAIVALAKTLNLKVVAEGVETEAQQAFLTQLGCNTLQGYL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P+   ++  L + 
Sbjct: 669 LGKPVTAQAVEALCQS 684


>gi|220934671|ref|YP_002513570.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995981|gb|ACL72583.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 854

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 130/447 (29%), Positives = 229/447 (51%), Gaps = 11/447 (2%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +   I  ++K+LE     A  D LT +PNR    DRL   + L   +   +  V+++D+
Sbjct: 399 AMQRQIHHRQKALE---HQALHDALTRLPNRVLLNDRLEQAIQLMERNGG-QLAVLLLDL 454

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K++ND LG  VGD +L  + RR+   L+  D +ARL G+ F I+ ++  +     +F
Sbjct: 455 DRFKEVNDALGHPVGDKLLQQVARRLRTSLRGSDTVARLGGDEFAILALN-TDGASALEF 513

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHV 692
           A  + ++I+    +  + + V  SIG A +      +S +++ A++AMY AKH+G G+ +
Sbjct: 514 AGKIHQAISGVFTIEHQNVYVGTSIGIALYPEHGNDASSLMRRADIAMYAAKHQGLGSCI 573

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            S      R+DR+ +  +L   ++N   L + Y P+  L      G+EAL++W HP  G 
Sbjct: 574 YSPEQDENRADRLSLVGELHQELQNPRNLCIHYQPLAALPSGNAAGMEALLRWQHPVHGP 633

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   E + +AE   +I  +  ++L            Q   P + + +N+++ +L D  L 
Sbjct: 634 IPPDEIIRMAEHTGLIGPLTRWVLVTALCQFRQLLKQ--HPDLTLSVNLSAWNLQDPHLP 691

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +   + +       + L  +ES +M +P  +R LL  L  +G++L++DD+GT  S LS
Sbjct: 692 EVVSDALRQCELPAFSLCLEITESAMMNDPVHARELLNVLSDMGVALSIDDYGTGFSSLS 751

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P DT+K + S +      E    I+RS I +A N+   ++A+ +     +  L  
Sbjct: 752 YLKLLPVDTLKIDRSFVMEMLEDENDAIIVRSTIDLAHNLGYKVVAEGVETGEVMTLLAA 811

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +GCDY Q  H+  P+ F+ I   L+  
Sbjct: 812 LGCDYAQGYHLCRPVAFDEIQAWLERY 838


>gi|89093691|ref|ZP_01166638.1| hypothetical protein MED92_11314 [Oceanospirillum sp. MED92]
 gi|89082087|gb|EAR61312.1| hypothetical protein MED92_11314 [Oceanospirillum sp. MED92]
          Length = 870

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/625 (19%), Positives = 260/625 (41%), Gaps = 47/625 (7%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDI--IQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           +P W L++       + +T    + I  +   L        +++    +  +       +
Sbjct: 283 LPGWRLLYF----KPVRVTGFFSDSIISVVSLLFLIASFTSVMLFKVGLIDLKRRRSAEE 338

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + +   R       S + +         + +      I G +   +     +    +  
Sbjct: 339 ELINSELRLRQLSELSNEGILIHQ-QGRILDSNKAAEQIFGYSREELLNS--DIWNLMAP 395

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +      T + + +         E   +  D     + I  R        +   +    D
Sbjct: 396 D---CVSTAVSNMLSGYERPYDIE--GKHRDGGIFPVEICARDSLLRGNGVR--VCCIRD 448

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++ +  +                      DR+   ++ +   D  + +V+ +D+D +K+
Sbjct: 449 LSQSQTQV---------------------TDRMDKAIESARQRD-AKLSVIYMDLDNFKR 486

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND  G   GD +L++  +R+   L   D L R  G+ F II     +  ++ +    + 
Sbjct: 487 FNDNWGHEFGDRILMATAQRLRATLTKNDSLIRYGGDEFVIIFSGTGDEQQVVEKVNDLI 546

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           + +     + +R++ +TA+ G A +      S E+++NAELAMY  + +G     SF   
Sbjct: 547 QKLKSEWLIDDRKVCLTATFGIAVYPEHGGNSKELMQNAELAMYRCREQGVQGHFSFYSN 606

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV--GLEALIQWDHPKWGNIS 753
            +S    ++++I++ L   +   EL LVY P+      ++     E L++W+    G + 
Sbjct: 607 EMSLAVKEQLLIEQHLREVLRLGELSLVYQPVYAERSNKLHLASAEVLLRWNSGVLGVVG 666

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ IAE    I  I  ++L R  R    W DQ +   + + +N++ + L   +    
Sbjct: 667 PDKFIPIAEHTGQIIEIGQWVLTRSCRQGKLWIDQGH--KLTLAVNVSPRQLRHPDYISQ 724

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T +   ++ L  +E +++ + +    +L +++ +G+ L++DDFGT  S LSYL
Sbjct: 725 LEKVLYETEFPAEQLCLEVTEGILLEDDQYVETILRQIKAMGVMLSIDDFGTGYSSLSYL 784

Query: 874 GYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFDT+K + S M    E      ++++ I MA  +   ++A+ +  +  +  L  + 
Sbjct: 785 KRYPFDTLKIDRSFMMDLEEHSSHQQLVKACILMAHGLNLNVVAEGVETDFQLGMLKNLN 844

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CDY Q   +  PL  N +  LL+++
Sbjct: 845 CDYFQGYLLNRPLPDNDLTDLLRKQ 869


>gi|107100049|ref|ZP_01363967.1| hypothetical protein PaerPA_01001070 [Pseudomonas aeruginosa PACS2]
          Length = 699

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ + +L  +  D LTG+PNRQ    +L  ILD +      R  V+ + +D +K IN+
Sbjct: 251 RREAEDNLLRISQYDFLTGLPNRQLLQQQLDQILDGAGRQQR-RVAVLCLGLDDFKGINE 309

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                +GD +L++L  R+         LARL G++F ++        + A+ A ++   +
Sbjct: 310 QYTYQLGDQLLIALADRLRGHSARLGSLARLGGDQFALVQADIEQPYEAAELAQSILDGL 369

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + + E+ + A+IG   +     T+ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 370 EAPFEIDQHEVRLRATIGITLFPEDGETTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDS 429

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A++  EL+LVY P +   D  +VG+EAL++W HP  G +    F+ 
Sbjct: 430 EMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIP 489

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  N L   +  L+ 
Sbjct: 490 LAEQNGSIFSIGEWVLDQACRQLREWHDQGFD-DLRMAVNLSTVQLHHNALPRVVSNLLQ 548

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 549 VYRLPARSLELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLD 608

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      E    I+R+II + K++   +IA+ +        +   GC+  Q 
Sbjct: 609 KIKIDKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCNEGQG 668

Query: 938 SHVASPLGFNSILKLLKERFPLVKNT 963
              + PL    + + LK+   L + T
Sbjct: 669 YLYSKPLPARELTQYLKQARRLSQAT 694


>gi|330953519|gb|EGH53779.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 820

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 128/596 (21%), Positives = 255/596 (42%), Gaps = 16/596 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RL  +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RLILNLLIAVNLVTAVVLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G P+      +  ND+ +  T+++  +  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDQSTLVEQIITGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+  + G I   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVPVALVGTPIY-TEGVISGAVLVLHDMTQEQQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD           +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFERRLQRVLDEDCGQGRSHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+    +    D A A+R+ +         R    T S
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCP-AETALDIAEALREVVQHLHFMWKGRPFMTTVS 497

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  +    L  A++A Y AK RG N V+++ V       R   +   + L +
Sbjct: 498 IGLVHLGDTPASLEGSLSAADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHM 557

Query: 714 AVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++
Sbjct: 558 AMDENRFCLYAQEIASIKGEVGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 617

Query: 772 LFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            +++  + + I   +       P     IN++   + D+   E ++   S    SP  I 
Sbjct: 618 RWVVHNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFSTFAVSPGMIC 677

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 678 FEITETSAIADLQSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 737

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 738 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIESALQEMGVDFAQGYLISRP 793


>gi|330504403|ref|YP_004381272.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328918689|gb|AEB59520.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 698

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 244/471 (51%), Gaps = 11/471 (2%)

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              R + +   D+ R   +   + + K SLE +   A  D LT + NR+ F       L+
Sbjct: 229 WIGRKLDDKERDLQRVNTLLVQLDQAKASLEQV---AHFDPLTELLNRRGFNRVFAATLE 285

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             A        VM +DID +K+IND LG   GD++L  + +RI   L+  DI+AR  G+ 
Sbjct: 286 EHAVTGRT-LAVMFLDIDHFKRINDSLGHDAGDELLRVVAQRIRAALRERDIIARFGGDE 344

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  ++ S +++      A  M + +  PI+L  R+I +T S+G + +     ++ E+LK+
Sbjct: 345 F-CVVASLDSNADPRGLAARMLEQMKEPISLAGRKIVMTTSVGISLFPQDGSSADELLKH 403

Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV-ENSELYLVYHPIIRLMDE 733
           A+LA+Y +K  G N V  F        S  + ++EDL  A+ +++ L L Y PII L   
Sbjct: 404 ADLALYQSKGSGRNVVHFFNPHLKQKASFELQLEEDLRQALLQDNGLVLYYQPIIDLRSG 463

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +  LEAL++W+HP+ G ++   F+ IAE    I  ++ ++L R   D+ S  +Q   P 
Sbjct: 464 ALSKLEALVRWNHPQHGLLTPERFIAIAEANGFIDLLDNWVLRRACLDLNSL-EQMGYPG 522

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + I +N ++ +L +++L   ++ L++ T      ++L  +ES ++ N  R+  LL  +R 
Sbjct: 523 LKIAVNCSALNLANDQLPGRIEQLLNATRCPAHCLELEVTESALLSNINRAIGLLENIRA 582

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+SL++DDFGT  S L+YL  +P DT+K + S +    ++ +   I+ +II MA  +  
Sbjct: 583 LGVSLSIDDFGTGYSSLAYLRRLPLDTLKVDRSFIQDVANSSQDREIVHAIIAMAHALHL 642

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            ++A+ +     +  L    CD +Q    + P+    I+ L    +  ++ 
Sbjct: 643 KVVAEGVETTAQLAFLQERDCDQVQGYLFSKPVPLEEIVTLFPPHYRPLER 693


>gi|300691237|ref|YP_003752232.1| diguanylate cyclase(GGDEF domain) and c-di-GMP phosphodiesterase
           (EAL domain) [Ralstonia solanacearum PSI07]
 gi|299078297|emb|CBJ50945.1| putative diguanylate cyclase(GGDEF domain) and c-di-GMP
           phosphodiesterase (EAL domain) [Ralstonia solanacearum
           PSI07]
          Length = 763

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 132/748 (17%), Positives = 293/748 (39%), Gaps = 39/748 (5%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           S  L   + +       +++ +  ++         LL+       A+             
Sbjct: 19  SRQLPMMYFILISSTWAVAVTYRGITPAWLTVGIPLLL---TLACAMRILHWWSSRRIDP 75

Query: 275 WNRWHAKVG----YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
                 +       +               F+Y             +I +    F + H 
Sbjct: 76  TPELALRALTRTNRLASVIAVSFTAWSFALFHYGDPYTRSYLAFYMAITMIACIFCLMHL 135

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                   +++    + F    G    +   ++  ++   L+  L++        V    
Sbjct: 136 RSAAVTVTVIVNGAFIAFFAATGQPTFVAIAINMALVSFGLLVILMVHYRDFTLMVNAQT 195

Query: 391 LATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHG 447
            A    ++   +    +   +AV+      +  +   +        IA +L + + ++ G
Sbjct: 196 EARRREAEQGRLLHMIDDMPVAVMTVEPGTFAINYANNTSKRLIDRIAHLLPIEADALLG 255

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +   + H   +        +     R RL  E            + + +  +  ++G
Sbjct: 256 TSIDVF-HTHPEHQRRLLADPANLPHNTRIRLGPEV-----------LDLTVSAVRANDG 303

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +  +     +T++ ++   I   A  D LTG+ NR +F ++L   L+       +R  
Sbjct: 304 SYIGPMLTWALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLEA----PGVRLG 359

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGIILISENN 626
           ++ ID+D +K +ND  G   GD +L  +  R+     +    +ARL G+ F +++  ++ 
Sbjct: 360 LLYIDLDGFKLVNDTKGHRAGDALLERVAERLRAVCDRPGVAIARLGGDEFAVLVPHDD- 418

Query: 627 SLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   A  A ++ ++++ P  L  ++ + + AS+G A   +    +  +L +A++A+Y AK
Sbjct: 419 ADCAAALATSLIEALSAPYPLDADQSVRIGASVGIALAPAHGGDAENLLAHADIALYAAK 478

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALI 742
             G      F     +    R  ++  L  A+E    L++ Y PI+ +   ++   EAL+
Sbjct: 479 AAGKGLARLFCADLETRIQARARLETQLRSALESQDRLFVFYQPIVDVETGKVTAREALV 538

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W H + G +   EF+ IAE+  +I  +  F+L R  R+   W D        + +N++ 
Sbjct: 539 RWHHVERGWVPPGEFVPIAEQSGLIDQLGRFVLHRACREATRWED-----GARVAVNVSP 593

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L    L + ++A +  +  +P R+++  +E+ ++ N   S   L +L  +G+ + LDD
Sbjct: 594 MQLGKATLAQTVRAALVDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDD 653

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L++L   PFD +K + S +           ++++I  + + +  T +A+ +  
Sbjct: 654 FGTGYSSLAHLRAFPFDKIKIDRSFVHDLLERPDSAVLVKAIADLGRQLGVTTVAEGVET 713

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  ++ +   GC   Q      P   + 
Sbjct: 714 QAHVRRIREAGCTEAQGYFYGRPAPSDE 741


>gi|209548610|ref|YP_002280527.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534366|gb|ACI54301.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 632

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 141/570 (24%), Positives = 252/570 (44%), Gaps = 23/570 (4%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ          + +      +  +D  +    +      + GL       P     
Sbjct: 63  SALSQAFDGQQRLFEIILNNLPLGLSVFDADQRLTLSNIRFGQLFGLTQAD-VTPGATIA 121

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-----SNGD 508
             I   D+        S  G R GR        +   +  W++   R + +     ++G 
Sbjct: 122 DLI---DKMRGAEGTGSKPGRRAGRHSSAAVKSSGIRRREWLMDDGRIIQSMVTILADGS 178

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               I I  DITE +K+ E I   A  D LTG+PNR  F +++ + L     D+     +
Sbjct: 179 N---IAIHADITEDRKAAERIAYLAHHDPLTGLPNRIHFREQVDSALAERKRDEQ--IAL 233

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +++D++K IN+++G++ GD +L  +  RI       + LARL  + F I+        
Sbjct: 234 IHLNLDRFKSINNMMGVSAGDTILQQVAARIRASAGSENTLARLGSDEFAILQTGRQQPW 293

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  +R+ ++ P    E+ + ++ S+G A        +  +LKNA +A+ HAK  G
Sbjct: 294 NVTALAEQIRRELSEPFLHGEKHMELSVSMGIAVAPGDGEETDILLKNAGVALSHAKADG 353

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 F        ++   ++ DL  A+E  E  L Y P+  L    I G EALI+W+H
Sbjct: 354 RKRERFFAGEMEAQMQLRHALEADLRAAIEKEEFELHYQPLYDLSQRRICGFEALIRWNH 413

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G ++  +F+ +AEE+ +I  I  ++L +   D + W +      I + +N+++    
Sbjct: 414 PIRGRVAPIDFIPLAEEVGLIVDIGRWVLHQACNDAVEWPE-----DIKVAVNVSAMQFS 468

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            ++L   +   ++    SP R++L  +ESV+M N      +L  L++ GI +++DDFGT 
Sbjct: 469 SSDLTSDVGEALAAASLSPLRLELEITESVLMENLGEVLPILHALKERGIRISMDDFGTG 528

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PFD +K + S +      ++  AI+ +II +   +   +  + +     +
Sbjct: 529 YSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAHAIMHAIILLGDALGMRVTVEGVETAEQL 588

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             L    CD IQ  H++ P     +  LL 
Sbjct: 589 ALLECEECDEIQGYHISRPRPACDVPHLLS 618


>gi|296283998|ref|ZP_06861996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Citromicrobium bathyomarinum JL354]
          Length = 875

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 248/584 (42%), Gaps = 31/584 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             + + +                    V     +++  D+   + V        I+GL  
Sbjct: 280 AAIFRDIRERKALETDRNHTRNLLDAIVANLPSLLFVKDLSTKKYVLVNDKACEIIGLPE 339

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSF------VGYRRGRLQYEFRVRAADNQFHWMI 496
             + G            DR+ F  I + F          +   +YE    + + Q   + 
Sbjct: 340 SEVIGRS----------DRELFGAIGEEFERRDLKAAQTKRPFRYESTFVSKNGQSFDIR 389

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                M   +      +G+  D+T+ +++       A  D LTG+ NR S  + L   + 
Sbjct: 390 TSRIVMDGPDRLGQYVLGVGEDMTDFRRTEAEKKWLARYDELTGLLNRTSLSELLADCV- 448

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                +     ++ +++D+++ +N+  G A GD VL  +  R+  L      +AR+ G+ 
Sbjct: 449 ----GEGTPFAMLCVNLDRFRAVNEQFGQAAGDAVLQEIGTRLQILCGAQATIARVGGDE 504

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I+L  +    +    A  +  + A PI        + AS+G A +         +   
Sbjct: 505 FIILLKGDRLESRTIQLAQKIVSTAAAPIVANGTFCHIGASVGVAFFPEDASFPQALRDR 564

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            ELA+  AK +GG  +  F     +   DR M++ DL +A++  ++ L Y P++ +    
Sbjct: 565 VELALDRAKKQGGGRICLFDATLDAQVRDRRMLESDLRIAIDRDDIVLHYQPVMSVRTGM 624

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +  +EAL +W+H   G +S   F+ +AE+  +I  +   +L R   D+++  D      +
Sbjct: 625 VSSVEALARWEHETRGPVSPEIFIALAEDCGLIDKLGCKLLNRACEDMLALPDT-----V 679

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ +     +L   ++A + +T   P R++L  +E +V+ N +++   L  LR +
Sbjct: 680 RVAVNLSPQQFKSGDLVPTVRAALKRTGADPRRLQLEVTERLVIENAQQTFAQLEALRSL 739

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETT 912
           GI + +DDFG   S LSY    PFD VK + S +      +   AI+ ++I +A  +   
Sbjct: 740 GIQILMDDFGVGHSSLSYFQMFPFDKVKIDKSFIADIETSKTARAIVEAVIGLAHQLSMG 799

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+A+ +  E     LT +GC ++Q      P     + +L+  +
Sbjct: 800 IVAEGVECEEQRSLLTELGCTHLQGYFFGKPAPLQKVAQLVARK 843



 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 13/143 (9%)

Query: 393 TGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
               S  + +  ER      +  +  + D +   D     V        + G  +  + G
Sbjct: 155 ARLASSLLIARRERLTGEIAAKVINATTDAIVAADREGKIVLMNGGAEDMFGHPAADVLG 214

Query: 448 PIRNWLPYIHIND-RDNFRTILDSF-VGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMS 503
                +  +     R   +  LD      + G+L+   E  V+ AD +     + +    
Sbjct: 215 KS---IEILMPERYRHGHKERLDRASASGQMGKLRTFGELPVQTADGEELLTDMSLAR-W 270

Query: 504 NSNGDILRYIGIANDITEQKKSL 526
             +     +  I  DI E+K   
Sbjct: 271 GGDDCAGGFAAIFRDIRERKALE 293


>gi|307825369|ref|ZP_07655588.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
 gi|307733544|gb|EFO04402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacter tundripaludum SV96]
          Length = 900

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 142/616 (23%), Positives = 259/616 (42%), Gaps = 24/616 (3%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ER------QSL 409
              + L   I +  L  G      L+G  + Q +        G  +D  ER        +
Sbjct: 155 TSAQDLTPWIQEYRLKFGEEPECWLLGNALPQRLADGSTLWHGFITDITERKQVETELQI 214

Query: 410 AVLG--SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           A     S + +   DI    +        + G +S  +     N L     +    F   
Sbjct: 215 AATAFESQEGMVITDINNVIIKVNQAFIRLTGYSSEELLNRRMNILKSGRHD--AKFYAA 272

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +   + +  G  Q E   +  + +     + I  + N+ G+++ Y+    DITE+K   E
Sbjct: 273 MWDSITH-TGTWQGEIWNQLKNAEVLPTFVTITAVKNNEGEVINYVATYTDITERKVIEE 331

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   AF D+LT +PNR    DR+   L     +  +   V ++D+D +K++ND LG A 
Sbjct: 332 KINNLAFYDSLTQLPNRVLLADRMHQTLARCRRNQEI-AAVCMLDLDGFKQVNDTLGHAA 390

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  + +R+ E ++  D  AR  G+ F ++L       +       +  +IA P  +
Sbjct: 391 GDRLLRDVAQRLKECIRQEDTAARFGGDEFALLLGGFATVSECEQTLARIVAAIAAPYQI 450

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
             +   ++ASIG   +         +L++A+  MY  K  G N  + F            
Sbjct: 451 FGQVAHISASIGVTLFPEDSSDPDLLLRHADQVMYEVKQAGKNGYKLFNSVHEVRNQTTQ 510

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
              + +  A+   +  L Y P +     ++VG+EA + W+HP  G ++ SEF+ + E   
Sbjct: 511 DFLKKIDEALAKGQFELYYQPKVDCHLGKVVGVEASVCWNHPVLGILAPSEFIPVIEHDD 570

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I A+  + ++     +  WR+      + I +NI++  L   E    +Q L+       
Sbjct: 571 LIIALGEWTIQSALLQLNEWRETGFN--LHISVNISACQLHSQEFLRRLQELLVGYDAEL 628

Query: 826 -SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS----LLSYLGYIPFDT 880
             R++L   E+  + +       + R R +G+ +TLDDFGT  S     L  L ++  D 
Sbjct: 629 IQRLELEIVETAALKDVIAGGDAIRRCRAMGVRVTLDDFGTGFSSLVQSLVRLNHLAVDA 688

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S ++      +  A++  ++ +A +    +IAK +     I  L  +GCD +Q S
Sbjct: 689 LKVDLSFVSDMLTDPEDRALVEGVVGLAASSRLQVIAKGVKYVDQIVMLMELGCDVMQGS 748

Query: 939 HVASPLGFNSILKLLK 954
            +ASP+    +   L 
Sbjct: 749 GLASPMSAKRMRTWLA 764



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 13/208 (6%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-------VIQHV 390
            LL+     IF+    + + I           AL+  + L+++L           +   +
Sbjct: 12  RLLLALAGAIFVGETLVMLFIDMLPPLSRWHTALLDAVWLLMLLFPAIYFLVFRPLKTQL 71

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMH 446
           +             +R       +  IV+ + +  D           +  I  ++   + 
Sbjct: 72  IQQEQAEITRQEAVDRLQKIASQAPGIVFQFQLRLDGSCCVPYANEGLFKIYRVSPEDVR 131

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    +H +D +N R  + +           E+R++  +    W++    P   ++
Sbjct: 132 EDASYVFTVVHPDDLENHRASIQTS-AQDLTPWIQEYRLKFGEEPECWLLGNALPQRLAD 190

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G  L + G   DITE+K+    +   A 
Sbjct: 191 GSTL-WHGFITDITERKQVETELQIAAT 217


>gi|322640804|gb|EFY37453.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
          Length = 674

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSQGKICRFNQSCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|160937057|ref|ZP_02084420.1| hypothetical protein CLOBOL_01946 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439958|gb|EDP17706.1| hypothetical protein CLOBOL_01946 [Clostridium bolteae ATCC
           BAA-613]
          Length = 850

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/553 (21%), Positives = 239/553 (43%), Gaps = 22/553 (3%)

Query: 410 AVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           A+  S  D ++  ++          +    GL   ++      W   IH +D   F    
Sbjct: 313 ALSASTDDYIFVGNMKTGVFRYPQAMVEEFGLPGQTVREAAAFWGQLIHPHDEAYFLESN 372

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            S    R      E+R R    ++ W+  R + + + +G    + G+ +++ ++ +    
Sbjct: 373 QSIADGREDYHNIEYRARNVRGEWIWLRCRGKMLRDKDGQPELFAGMISNLGKKNQI--- 429

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
                  D++TG+ N+  F   +   L  +         +MV+D+D +K IND+   + G
Sbjct: 430 -------DHMTGLYNKYEFEGNIKKYL--AGRKSMDSIGLMVLDMDSFKNINDLYDRSFG 480

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D+VL    ++   +L    +L RL G+ FGI+L+ E ++ + A     ++++        
Sbjct: 481 DEVLRITAQKAASMLPPNAMLYRLDGDEFGILLL-EGDAKEAARIYGKLQQNFCRQQEYG 539

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
            R+   T S G+A +        E+LK+A  ++ ++K  G N +  F           ++
Sbjct: 540 GRKYFCTLSAGYAGYPEDGSNYLELLKSANYSLEYSKMMGKNRMTVFSRDILADRERRLE 599

Query: 709 --EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             E L  +VE       + Y P +  +   + G EAL +W   K+G++S  EF+ + E+ 
Sbjct: 600 LMELLRESVERGFAGFTIHYQPQVDTLSGRLCGAEALARWHCSKYGDVSPGEFIPLMEQS 659

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I     ++L       + W      P   I +N++   L   +    ++ ++ +   +
Sbjct: 660 GLIIPFGQWILSHSMAQCLEWSRS--KPDFQISVNLSYIQLTQGDFISFLRTVLEENSLA 717

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PSR+ +  +E+ +    E +  L+ +++++G+ + +DDFG   S L  L  IP D VK +
Sbjct: 718 PSRLIMELTETYLAKAEEDTLRLIAQMKELGVKIAMDDFGVGYSSLFSLKSIPVDVVKID 777

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              + G T        +RSI  +  ++   +  + +  + + + +  +G +YIQ  +   
Sbjct: 778 RGFVKGITSDLFNATFIRSITDLCHDVGRKVCLEGVETKEEYEAVRELGMEYIQGYYFGR 837

Query: 943 PLGFNSILKLLKE 955
           P+        LKE
Sbjct: 838 PMSARQFEDRLKE 850



 Score =  116 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 98/291 (33%), Gaps = 33/291 (11%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            +  +       +  D+  D +      +    GL    +          +  + +    
Sbjct: 13  LAAVLDQMDTNFYITDVETDEILYMNKTMKETFGL----IRPEGCVCWQVLQKDMKGRCP 68

Query: 466 ----TILDSFVGYRRGRLQYE-----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 L+     +    +        + R  D+   W            G +       
Sbjct: 69  YCKIRQLEQMEDNKICVWRETNSVTGRKYRNYDSLIQW-----------KGKLYHIQNSV 117

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE     + I   A  D LT + NR+   +RL   L+  + ++ +   V+  DI++ 
Sbjct: 118 -DMTE----YDQISETARTDELTRMLNRRGGSERLIRALEQGSRENQIVTVVLY-DINEL 171

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G + GD +L  +     E L   D + RLSG+ F ++     +     +    
Sbjct: 172 KSVNDRYGHSEGDKLLQYVASIAKECLGRLDFMYRLSGDEFVMVFYG-RDMNAADESMKR 230

Query: 637 MRKSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKH 686
           +          L +E  V+ S G A  +     +  +++  A+  MY  K 
Sbjct: 231 LLTRAGQERERLLKEYDVSFSYGIAEVYPGEMGSVEDIISRADEQMYIQKR 281


>gi|213968729|ref|ZP_03396871.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301381344|ref|ZP_07229762.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060230|ref|ZP_07251771.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302130019|ref|ZP_07256009.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926662|gb|EEB60215.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 818

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 128/596 (21%), Positives = 257/596 (43%), Gaps = 18/596 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLMAVNLFTAVVLILLALLRVRRLIVQRRLFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+    V   P    +    S    G P+      +  ND+ +  T++D  V  +    
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDSSTLIDQIVTGKLKGG 320

Query: 480 QYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + + ++  D     + +   P+  + G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SADSKLIQRLDGSTVSVALVGTPIY-TEGVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD S+T  +    +M +D+D++K +ND  G A GD++L  L + 
Sbjct: 380 TGLVNRSEFERRLQQVLDDSSTSSHC---LMFLDLDQFKLVNDTGGHAAGDELLRQLCQA 436

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+         D A A+R+ +         R    T S
Sbjct: 437 LPQGLRDSDTLARLGGDEFGVLLVDCTT-STAHDIAEALREIVQGLHFMWKGRPFMTTVS 495

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  T    L  A++A Y AK +G N V+ + V       R   +   + L +
Sbjct: 496 IGLVHLGDTPATLEGSLSAADMACYMAKEKGRNRVQVYSVDDLTLSMRFGEMAWIQRLHM 555

Query: 714 AVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  + D   E+  +E L++        +    F+  AE   ++  ++
Sbjct: 556 AMDENRFCLYAQEIASIKDQGNEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 615

Query: 772 LFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            ++++ + + I   +       P     IN++   + D+   E ++        +P  I 
Sbjct: 616 RWVVQNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFKTFAVAPEMIC 675

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 676 FEITETSAIADLDSAIRFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 735

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   +A P
Sbjct: 736 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETSQVESALQEMGVDFAQGYLIARP 791


>gi|325277068|ref|ZP_08142725.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas sp. TJI-51]
 gi|324097798|gb|EGB95987.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Pseudomonas sp. TJI-51]
          Length = 1001

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 235/498 (47%), Gaps = 11/498 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V      + + G A   +   + + L  +
Sbjct: 509  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSDVLDQLPSMLT-V 567

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R ++     ++RG  + E  ++  D   +   + I  + +  GD+  Y+   
Sbjct: 568  DEQQESHLRYVVKQL--HQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCFF 625

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DI+E+K S + I   A+ D LT +PNR  F DRL   L  +         +M +D+D++
Sbjct: 626  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAER-QKAWVVLMFLDLDRF 684

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL----KIAD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L           +   
Sbjct: 685  KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRATREMALNRAIH 744

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 745  VAENILASLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 804

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     S  +R+ ++ DL  A+E +E  L Y P      + + G EAL++W HP  G
Sbjct: 805  QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 864

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+ + EEL ++  +  ++L   +R + +W       P  + +NI+++   D +L
Sbjct: 865  LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVP-KVSVNISARQFSDGQL 923

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  ++ +    P+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 924  GTRIATILEECGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSL 983

Query: 871  SYLGYIPFDTVKFNGSLM 888
            +YL   P D +K + + +
Sbjct: 984  NYLKQFPIDVLKIDRTFV 1001



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              SQ +    +R  +      D+++  D +      +P + ++LG  +  +      W 
Sbjct: 370 IEASQSLRDSEQRYRMLAESISDVIFSTDSLLQLNYVSPSVQSVLGYQAEWIFTN--GWQ 427

Query: 454 PYI-HINDR-------DNFRTILDSFVGYRRGRLQYEFRV-----RAADNQFHWMIIRIR 500
             I +           +     +       + R Q   ++       AD +   + +R+ 
Sbjct: 428 SIIANPAQLTGIYSLMERVSKAMGDAEQLAQLRSQLPTQLFLFDCLRADGRKIPIELRLV 487

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            + + +      +G+  DI++Q+++ + +   A 
Sbjct: 488 LVWDDDQRFEGVLGVGRDISQQRRAEKDLRMAAT 521



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  R+  +   +   LG   
Sbjct: 227 ILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGQTLGYDR 286

Query: 443 GSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIR 500
             +      +   + H  D  +++ +          + L  + R R  D  +    IR +
Sbjct: 287 TELAHMGERFWELLLHPEDAAHYQALRQQQRNNGHDQQLHCQLRFRHRDGSWRCYDIREQ 346

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  N+ G + R IG+  D+T Q       + S +     A
Sbjct: 347 VLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLA 387


>gi|257482481|ref|ZP_05636522.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320321946|gb|EFW78042.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330948|gb|EFW86922.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330872180|gb|EGH06329.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330984626|gb|EGH82729.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 712

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 119/615 (19%), Positives = 254/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLSASVDQLRGTQVLDY-IIEPQVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D   +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 DWLESGFYKHYRKADTYRVHDAVLRTAQGTQLPVALSCAALPAEQ---KAMVMTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     +  +L       +    V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVEGMLLR-KEQTDKYLVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P + + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGKDFSVVYQPQVHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W        + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSRVFAA-DVVLSVCVSPTQFCMPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +ES ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITESSLVHNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +    E R   A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 623 TLKLDRRFVANIVESRREAAMASSIIDLSRNLDMLVIAEGVETPEQYQWLADNGCQVMQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 683 FLIAHPMVPEDALRF 697


>gi|330972353|gb|EGH72419.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 810

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 123/595 (20%), Positives = 247/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RL  +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RLILNLLIAVNLITAVVLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +         G P+      +  ND+ +  T+++  +  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKGTQASGLPLAALFNLLDENDQKDQSTLVEQIITGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+  + G I   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIY-TEGVISGAVLVLHDMTQEQQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD           +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFERRLQRVLDEDCGQGRSHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPAETALDMAEALREVVQRLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  +    L  A++A Y AK RG N V+++ V       R   +   + L +A
Sbjct: 499 GLVHLGDTPASLEGSLSAADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +     E+  +E L++        +    F+  AE   ++  +N 
Sbjct: 559 MDENRFCLYAQEIASIKGEVGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLNR 618

Query: 773 FMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +       P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFKTFDVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLQSAIRFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIESALQEMGVDFAQGYLISRP 793


>gi|186473548|ref|YP_001860890.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184195880|gb|ACC73844.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 689

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 206/437 (47%), Gaps = 7/437 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               I+  A  D LT +PNR +  +R+   +  S  +      ++ +D+D +K IND LG
Sbjct: 251 LNNQIVRLATYDTLTNLPNRVTLTERIEHAIRTSKLNGRG-FAILFMDLDGFKTINDSLG 309

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD+VL S +  + + ++  D +ARL G+ F ++  S          A A+   +   
Sbjct: 310 HAFGDEVLKSFSHSLRQCVRNVDTVARLGGDEFVVLAESLGAPQDAQKMAEAVLDRMRKG 369

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702
           I    + + V  SIG A +     +  E+LK+A+ AMY AK  G +    F   ++    
Sbjct: 370 IETQSQTLQVMPSIGIALYPQDGHSVDELLKHADAAMYEAKRGGRSTYRFFEAHMNEAAM 429

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + I+  L  A+      L + P  R    E+ G EALI+ +HP+ G ++  +F+ IAE
Sbjct: 430 RTLKIQSALHEALGKGYFSLHFQPKFRGDSGEVAGAEALIRLNHPEIGALAPMDFIPIAE 489

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  I  +++    R I  W + + +P + + IN++ + +   +L      ++    
Sbjct: 490 RSGQIVQIGYWVVRETCRQIRRW-EASGLPSMKVAINLSPRQMTQPDLVAKTLEIVHAEG 548

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S++    +E+V M +  ++  ++   +  G  +++DDFGT  S L+YL       +K
Sbjct: 549 VDCSQVMFEITETVAMQDAAKTTEMIREFQASGFEISIDDFGTGYSSLAYLQRFRVKQLK 608

Query: 883 FNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +     G         AI+++II +A ++E  ++A+ +     + +L  + CD +Q   
Sbjct: 609 IDRFFTNGLDADGHEGSAIVQAIIALAHSLEMDVVAEGVETASQLDKLKDLQCDEMQGFL 668

Query: 940 VASPLGFNSILKLLKER 956
           +  PL  ++  +LL+ R
Sbjct: 669 LGRPLTADAFSELLQAR 685


>gi|303241279|ref|ZP_07327785.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302591196|gb|EFL60938.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 899

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 126/444 (28%), Positives = 231/444 (52%), Gaps = 13/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP---TVMVIDIDKYKKIN 580
           +S + +   A+ DNLTG+PNR +F + L  I++     ++       V++ID+D++K++N
Sbjct: 447 QSEQKLQQLAYYDNLTGLPNRSNFTNHLKLIIEDKKQSESNNIEDTAVIMIDLDRFKQVN 506

Query: 581 DVLGIAVGDDVLVSLTRR----IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           D +G A GD +L S+  R    +  L      +ARL G+ F  +L   N   +I   AI+
Sbjct: 507 DTMGHAAGDLLLNSVAERMNKALSGLDSNNFFIARLGGDEFVTVLNGLN-MSEIESVAIS 565

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  S+  P  L  +E+ +  S+G + +       S+++KNA++AMY AK  GGN    + 
Sbjct: 566 LIDSLKKPFWLEGKEVFIGGSLGISVYPYDGDGISDIIKNADIAMYSAKEHGGNKYCFYS 625

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +     D++ I+  +  A++N++  L Y P I      ++G EALI+W  P+ G IS 
Sbjct: 626 QINSLGIPDKMRIENGMHRALKNNDFALYYQPKIDAKSGMLIGAEALIRWHDPENGLISP 685

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I  I  + L   AR ++ W+       + I +N +     +N+L   +
Sbjct: 686 DRFISLAEKTGLIIPIGEWALREAARQMMEWKRAGYD-KLRISVNCSPIQFKNNDLSLLL 744

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q +I++T   P  ++L  +E + + N E     L  +R +G+S+++DDFG   S LS L 
Sbjct: 745 QNIINETGLDPECLELEITEGLNIENKELVIKELTSIRNMGLSISIDDFGMGYSSLSALK 804

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   ++     +  +A+++S++ +AK+I   + A+ +     +  L +MGC
Sbjct: 805 GLPITGLKLDKLFVSNIPFDKHNVAVIKSVLRLAKDINLKVTAEGVETIESVNCLRKMGC 864

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D +Q    + P+     L  L+ER
Sbjct: 865 DELQGYFFSKPVPPAQFLVFLEER 888


>gi|91794950|ref|YP_564601.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716952|gb|ABE56878.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 570

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 217/435 (49%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + S   +   A +D LTG+ NR  F + L   +  +   +N    ++++D+D +K +N
Sbjct: 128 ELRSSYVKLRHLAERDTLTGLTNRYFFDETLKNAIPTAKR-ENKSLALIMLDLDFFKNVN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G   GD +L  + +R+   L+  D L RL G+ F I++ +  N + I      + +S
Sbjct: 187 DTMGHEAGDYLLQEVAQRLKNPLREGDTLCRLGGDEFAILVQNLGNIVNIGQLIARVFES 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +   + +    +TVTAS+G A++      +++++K A++AMY +K  G N    +   + 
Sbjct: 247 LKPAMMINGNPVTVTASLGIATYPDCATDANQLMKCADVAMYRSKSSGRNQSHFYSKAIH 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                RV ++ DL +AVE  +  L Y P +   D  IVG+EALI+W HP  G IS   F+
Sbjct: 307 DEVLKRVTLESDLRIAVEQQQFILYYQPQVSYNDHHIVGVEALIRWQHPTQGLISPMVFI 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE+ +I  I  ++++   + +  W +   N   + +  N+++  L  ++  + +   
Sbjct: 367 PVAEEMGLIDEIGRWVIDMACQQLAQWNQMTRNDVKLSMAANLSALQLNRSDFYQFVMNT 426

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +SK    P +++L  +ES  +   E +   L  L   GI L LDDFGT  S L++L  +P
Sbjct: 427 LSKHEIQPEQLELELTEST-INRSEIADKQLMDLSLAGIKLALDDFGTGYSSLTHLQLLP 485

Query: 878 FDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           F+ +K + S +     E     LR+I   +K +   I+A+ +  E        +  D IQ
Sbjct: 486 FEVIKIDKSFIHNIHSESDSHFLRAICAFSKALNFEIVAEGVETEFQRGLCESLKVDRIQ 545

Query: 937 DSHVASPLGFNSILK 951
             + A P+    + +
Sbjct: 546 GYYFAKPMPAKELEE 560


>gi|288962291|ref|YP_003452586.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
 gi|288914557|dbj|BAI76042.1| diguanylate cyclase/phosphodiesterase [Azospirillum sp. B510]
          Length = 688

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 222/465 (47%), Gaps = 14/465 (3%)

Query: 499 IRPMSNSNGDILRYIGIA-NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD- 556
           + P  +++ ++   I    + +T  ++  + +   A +  LTG+ NR   LDRL   ++ 
Sbjct: 214 VVPRGHADDELGFVIARFNHTLTLLEREHDELRRMATRCPLTGLANRALLLDRLDHAIEL 273

Query: 557 --LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
              +      R  V+ +D+D++K++ND LG  +GD +L  +  R+G  ++  D + RL G
Sbjct: 274 ANRARASGAGRLAVLYVDLDRFKRVNDSLGHGIGDLLLCRVAERLGASVRRCDTVGRLGG 333

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT----SSKITS 670
           + F ++L    +  + A  A  +   ++    + E  + +TASIG A            S
Sbjct: 334 DEFLVVLERVADRDEAAMVARRLLNDLSSLREVGEHRVHLTASIGIALHPAAPAGDSPDS 393

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPII 728
           + +++ A+ AM  AK  GG+    +          R+ ++  L  AV      LVY P I
Sbjct: 394 TNLMRMADSAMQAAKAAGGDRFVFYTRDMTDRAQTRLRLESGLREAVAARCFELVYQPKI 453

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 + G EALI+W H +   IS ++F+ +AE+  +I  I  ++LE   R    W   
Sbjct: 454 EAASGRLTGFEALIRWRH-EGAAISPADFIPVAEDTGLIIEIGHWVLEEACRTATRW--A 510

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
            +  P+ + +N+++  L D      ++ ++ +    P  ++L  +E+V+M +       L
Sbjct: 511 LDHGPVPVAVNVSAHQLADPAFARQVEQILQRHGTPPELLELEITETVIMKDVRHHLPTL 570

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN 908
            RLR +G+ + +DDFGT  S L+YL  +P D +K + S +         I  ++I +A+ 
Sbjct: 571 NRLRGLGVRIAIDDFGTGYSSLAYLRQLPVDVLKIDRSFINDL-PHAPDIASTVIALAQR 629

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  + +A+ +        L   GCDY+Q   ++ PL  +S   ++
Sbjct: 630 LMLSTVAEGVETAEQRHWLAEAGCDYLQGYLISRPLSADSAEAMV 674


>gi|107102843|ref|ZP_01366761.1| hypothetical protein PaerPA_01003911 [Pseudomonas aeruginosa PACS2]
          Length = 726

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 284/696 (40%), Gaps = 57/696 (8%)

Query: 279 HAKVGYITFSGIACIAIL---FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
           H ++     +      I    F     +    A    + +  + L       Y  M    
Sbjct: 56  HPRLWQWIGAFCLGSGIWATHFVAMLAFHAPIALRYDLPITGLSLLIAVAASYLAMYMTA 115

Query: 336 RAVLLIPAWILIF--IWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           R    +   +L    I      M  T       +        L  + +LI        LA
Sbjct: 116 RPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPSLFALSVLIAIGAAFTALA 175

Query: 393 TGYFSQGIFSDGERQ-----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
              + +G  S   R      SL + G+                        G+A+  +  
Sbjct: 176 AVPYLRGRRSARYRYMKLIASLLLAGAI-----------------AAMHFTGMAALVLSV 218

Query: 448 PIRNWLPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           P    L      D         +L S +                     W     +    
Sbjct: 219 PAGTPLELQASADSLRLGWLTGVLASAIAACG----------------IWAAWSEKQRER 262

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +  R   + N +     +   +   A  D+LTG+ NR +F +     L+        
Sbjct: 263 RLSENSRVNALLNQLD---HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG 319

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +D+D +K+IND LG   GD +L  ++ RI  +L+  D++AR +G+ F  +L   
Sbjct: 320 -LAVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEF-CVLADL 377

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    +  + + +  PI L  R + +TAS+G + + +      E+LKNA LA++ +
Sbjct: 378 TQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQS 437

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N+ + F        +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL+
Sbjct: 438 KACGRNNAQFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALV 497

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +    F+ +AE   MI  ++ ++L R  RD+ S    A    + + +N  +
Sbjct: 498 RWRHPTQGLLGPDRFIGLAEANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCA 556

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +L    L + ++  + +   +   ++L  +E  +M N +++  LL RLR++G+SL++DD
Sbjct: 557 SNLGRASLVDEVRHALEQAGLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDD 616

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P D +K + S +     +++ + I ++II MA+ +   ++A+ +  
Sbjct: 617 FGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVET 676

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L    C+ +Q    + PL   ++ + L+  
Sbjct: 677 PQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAY 712


>gi|134296540|ref|YP_001120275.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
 gi|134139697|gb|ABO55440.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
          Length = 790

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 339 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A ++ +  A P 
Sbjct: 397 NAGDIVLRMTASRLSDAVGDEGSLARIGGDEFVVVMKGDDIERRAVRLAESVIRMFAEPF 456

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 457 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 516

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+  ++L+L Y P I L    I G EAL +WDHP+ G IS++EF+  AE 
Sbjct: 517 LMRWEQQLRVALAEAQLFLAYQPKIDLTHRTITGFEALARWDHPEHGIISANEFISTAES 576

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WRD  +   + + +NI+       +L E +   +  T  
Sbjct: 577 TGLIVPIGDFVIRTACEQLARWRDDGHDT-LTLAVNISPVQFWRGDLIETISQALQDTGI 635

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             SR++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 636 DASRLELEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 695

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 696 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLSALGEIEAQGFLFS 755

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 756 RPVPADAIPALIAR 769


>gi|254788399|ref|YP_003075828.1| GGDEF/EAL domain-containing protein [Teredinibacter turnerae T7901]
 gi|237685442|gb|ACR12706.1| GGDEF/EAL domain protein [Teredinibacter turnerae T7901]
          Length = 1312

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 216/446 (48%), Gaps = 13/446 (2%)

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            I E+++S       A+ D LTG+ NR   LD L  +++       L   ++ I  D++++
Sbjct: 858  IEERRESEARAQYMAYHDTLTGLKNRVWLLDHLRQLIEQ----GQLPFALLYIGGDRFRR 913

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IND  G  VGD +L  + RR+  LL       RL  + F +++ + +N  +    A  + 
Sbjct: 914  INDSHGHLVGDKLLGEVARRLRRLLPDSGHCVRLGSDEFAVVIDNVSNRTEAVTVANRII 973

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +     ++ + +I+   SIG          ++++L+NA +AM  AK RG    + F   
Sbjct: 974  ATFQQKFSVDQLQISFGVSIGILFADKQYNEATQLLRNANIAMQRAKERGRGVYQLFDHD 1033

Query: 699  SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R+   + +++ DL  A+ + EL + Y PI+ L +  +   E L++W H + GN+ + +
Sbjct: 1034 VLRTMLDKTLMEVDLRRALSHDELTIAYQPILHLKNHRLRSFEVLLRWHHTQRGNVPTEQ 1093

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQ 815
            F+ +AE + +I  + +++L +    I SW+ +  +     I +N++   +   +L   + 
Sbjct: 1094 FIAVAESIGLIFELGIWVLRKACLQINSWQAEFGLQNTPKIAVNLSPLQMRQADLLSRID 1153

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +  +T  SP +I+   +ES +M N +   +LL  LR+ GI L +DDFGT  S LSYL  
Sbjct: 1154 DVFRETGASPDKIRFEITESALMENTDTVDMLLEGLRERGIELAIDDFGTGYSSLSYLDR 1213

Query: 876  IPFDTVKFNGSLM------TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            +P   +K + + +         T     I+R+ I +A  +   ++A+ I  E     L  
Sbjct: 1214 LPVQQLKIDRAFVTALVHNKNDTGNANEIVRATINLAHTLNMRVVAEGIETEEQRDILAS 1273

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKE 955
              CDY Q   +++P+        L+ 
Sbjct: 1274 YSCDYGQGYLISAPMDAVEATSYLRS 1299


>gi|78067162|ref|YP_369931.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77967907|gb|ABB09287.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 730

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 279 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 336

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 337 NAGDIVLQMTASRLSDAVGDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 396

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 397 DVRGSSFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 456

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 457 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRHITGFEALARWDHPEHGIISANEFISIAES 516

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + +NI+       +L E +   + +T  
Sbjct: 517 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAVNISPVQFWRGDLIETISRTLLETGI 575

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 576 DANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 635

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 636 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQITWLAALGEIEAQGFLFS 695

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 696 RPVPADAIPALIAR 709


>gi|113866723|ref|YP_725212.1| putative sensor protein [Ralstonia eutropha H16]
 gi|113525499|emb|CAJ91844.1| predicted signal transduction protein containinga membrane domain, an
            EAL and a GGDEF domain [Ralstonia eutropha H16]
          Length = 1132

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 122/579 (21%), Positives = 233/579 (40%), Gaps = 17/579 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
                 ++ +F + ER  + +   GD V   D         P    + G    S  G P+ 
Sbjct: 547  EQRRLTEALFEEKERLHITLRSIGDAVICTDAAMHVTFMNPIAEQLTGWTMASATGLPLE 606

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +     D   + +++ +         +   +++   + H +     P+  + G++
Sbjct: 607  QVFRIVDEATGDPIPSPVEACLRTLAPAYLQDGAVLQSLTGERHDVQDSAAPVLTARGEV 666

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            L  + +  DIT  +     +  +A  D LTG+PNR  F  RL    D +    + R  + 
Sbjct: 667  LGAVLVFQDITTARALQRELARSAMHDALTGLPNRTWFEKRLREACDAARLHGH-RAALC 725

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             ID+D++K +ND  G   GD +L  L   I   ++  D+LARL G+ F ++L        
Sbjct: 726  FIDLDRFKIVNDTAGHGAGDVLLRELGYMIRNHVRPDDVLARLGGDEFALLLKDCTVDQA 785

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                   +            R   + ASIG A+        SE++  A++A Y AK  G 
Sbjct: 786  EQVCQGVIDAIRGRRFPWEGRVYDMGASIGIAAIDLDVPPVSELMSRADVACYAAKAAGR 845

Query: 690  NHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYH------PIIRLMDEEIVGLE 739
            + V  +R            + +   +  A+E +   L         P       E   +E
Sbjct: 846  SRVSVYRRDESDARRHHRELEVAAGIHSALEANRFRLFAQEIRALQPEENEDGAEHCHIE 905

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             L++        I    F+  AE   ++  ++ +++  + R          +P + + IN
Sbjct: 906  ILVRMVDEHGDLIMPGAFIPAAERYDLMGHVDRWVIRNVLRGYGE--RLGAVPGLSVSIN 963

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +++  L +  L   + A +  +    SRI+L  +E+ ++ N   +  L+  +R+ G +++
Sbjct: 964  LSANSLGEPFLLPFLHAELEASALPASRIRLEITETALINNMAAANRLVTEMRRAGCTVS 1023

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
            LDDFG+  S  +YL   P D +K +GS +    +      I+ SI  +   +    +A+ 
Sbjct: 1024 LDDFGSGLSSFAYLKQFPVDFLKIDGSFIRQLADNAVDREIVSSINDIGHRLGVRTVAEW 1083

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  E  +  L  +G DY Q   +  P+  +  L   ++R
Sbjct: 1084 VEDERTLDALRAIGVDYAQGYVIGRPVALDVFLAGCRQR 1122



 Score =  120 bits (300), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 105/343 (30%), Gaps = 34/343 (9%)

Query: 195 IIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
           ++G    LA F  +  +     +     A A  +    +    F S            W+
Sbjct: 123 VLGRHGPLAAFAVMLAV--GGILAPALGATAGAMAIAATHGTSFASVWWTW-------WQ 173

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF-CMSFYYPMVTASIARI 313
           A +        ++     +      A+      +G   + +     + +      +   +
Sbjct: 174 ADALGMALLLPMMLSMTEVRVRAAVARPVLAPQAGALALCLAIGAFAQWQSHDPFAAMSL 233

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
            L  + L    F                    L+    +   M +  R +   +  A   
Sbjct: 234 PLVLVALAGNPFATALL--------------TLVATLCLQALMLLAHRHEAVPLSAA--- 276

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
               ++++    +        +    + S  +R   A+  S   +    +     T    
Sbjct: 277 ----VIMVFPVCIAYLTEQNRHGRASLRSSDKRFRQAMEHSAIGMALVGMDGRCQTVNRA 332

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           +  +LG ++  +H    ++    H +D       +D+ +  +    + E R R  D  + 
Sbjct: 333 MTELLGYSAAELH--ELSYQQLTHPDDLTGDLRQVDNLLSGKIESYRLEKRYRHKDGHYR 390

Query: 494 WMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQ 535
           W+++ +  + +   G+   +I    DI  +K + + +   + +
Sbjct: 391 WVLLAVSLVRDEQTGEPQHFITQVEDIHARKLAQQELERLSRR 433



 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 1/144 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T ++ + A     Q +     R  LA    G  +W+WD     VT    +  + G    
Sbjct: 411 ITQVEDIHARKLAQQELERLSRRIQLAAEAGGVGIWEWDFTSAGVTWDARMHALHGTDPA 470

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +  W+  +H +D       +   +         E+R+         +        
Sbjct: 471 GGTPVVEQWIAMLHPDDVSRVSGEMRQAIRGE-APFDTEYRIARPGGDVRHVRAMAMVTR 529

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
             +G     +G   DITEQ++  E
Sbjct: 530 TDDGTAQALVGTNWDITEQRRLTE 553


>gi|170700638|ref|ZP_02891636.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
 gi|170134457|gb|EDT02787.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
          Length = 779

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 386 NAGDIVLQMTASRLSDAVGDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 DVRGSSFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 506 LMRWEQQLRVALAEGQLFLAYQPKIDLTQRTITGFEALARWDHPEHGIISANEFISIAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD  +   + + INI+       +L E +   +  T  
Sbjct: 566 TGLIVPIGDFVIRTACEQIARWRDDGHDT-LTLAINISPVQFWRGDLIETISQALQDTGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 625 EANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 685 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLSALGEIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 745 RPVPADAIPALIAR 758


>gi|296388186|ref|ZP_06877661.1| hypothetical protein PaerPAb_08521 [Pseudomonas aeruginosa PAb1]
          Length = 726

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 227/437 (51%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   +   A  D+LTG+ NR +F +     L+           VM +D+D +K+IND L
Sbjct: 279 HAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKG-LAVMFLDLDHFKRINDSL 337

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  ++ RI  +L+  D++AR +G+ F  +L       +    +  + + +  
Sbjct: 338 GHDSGDELLKIVSERIRSVLRDSDVVARFAGDEF-CVLADLTQDHEAHILSQRLMQKMKE 396

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           PI L  R + +TAS+G + + +      E+LKNA LA++ +K  G N+ + F        
Sbjct: 397 PIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQSKACGRNNAQFFSRQLLVRA 456

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++E+L  A+ + +L L Y PI+ L D E+  LEAL++W HP  G +    F+ +A
Sbjct: 457 TQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALVRWRHPTQGLLGPDRFIGLA 516

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   MI  ++ ++L R  RD+ S    A    + + +N  + +L    L + ++  + + 
Sbjct: 517 EANGMIDQLDDWVLRRACRDLRSLH-LAGHERLRVAVNCCASNLGRASLVDEVRHALEQA 575

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   ++L  +E  +M N +++  LL RLR++G+SL++DDFGT  S L+YL  +P D +
Sbjct: 576 GLAACFLELEVTEDALMYNIDQTIPLLERLRELGVSLSIDDFGTGYSSLAYLRRLPLDAL 635

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +++ + I ++II MA+ +   ++A+ +     +  L    C+ +Q   
Sbjct: 636 KVDRSFIMDIPASQRDMEIAQAIIAMAQKLHLKVVAEGVETPQQLAFLRENHCELVQGYL 695

Query: 940 VASPLGFNSILKLLKER 956
            + PL   ++ + L+  
Sbjct: 696 FSRPLPLAALEEFLRAY 712


>gi|317406652|gb|EFV86824.1| hypothetical protein HMPREF0005_04995 [Achromobacter xylosoxidans
           C54]
          Length = 589

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 121/557 (21%), Positives = 238/557 (42%), Gaps = 29/557 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    D     D         P    +L  +   + G    W      +          
Sbjct: 49  TLDALADGFLSLDRDWRVAYLNPGAERLLRRSRQDLVGHGL-WDSC--PDLVGTGYYDAC 105

Query: 470 SFVGYRRGRLQYEFRVRAADNQFH----WMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                         R       +     W   R  P             +  D++ +++ 
Sbjct: 106 RAAAQTG-------RPAHHTGYYAPLATWFEARAFPHEG------GLAILLRDVSREREE 152

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA---TDDNLRPTVMVIDIDKYKKINDV 582
              +   A  D LTG+PNR+  ++ L+  +  +            V+ +D+D++K++ND 
Sbjct: 153 TAQLKYQATHDYLTGLPNRRQCMETLSAAIAEAEPALAARGATLAVLFLDLDRFKEVNDA 212

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L  +  R+ + L      AR+ G+ F ++L    N       A ++  S++
Sbjct: 213 FGHAEGDLLLCDVADRLRKFLTPSIFCARVGGDEFLLVLRD-TNERAAEALANSILNSLS 271

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P ++  R +++ ASIG A   S   ++  +L  A+ AMY AK  G   V ++     + 
Sbjct: 272 RPSDVHGRSLSLGASIGIALLNSPGESAETLLNYADAAMYAAKSAGRFQVRAYHRELMQG 331

Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ ++ D+  A+ N++  L + P + + D  + G EAL++W HP  G +  + F+ +
Sbjct: 332 LGARLSLRGDIQGALTNNQFELHFQPQVSMHDGSLCGAEALLRWRHPTRGLLGPAAFLDV 391

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +  A+  ++       I  W  +    P  I  N++++ L+  +L + +  L + 
Sbjct: 392 ILDSPLESALTEWVANATCLHISEWLAEGLPVP-RISFNLSARQLVAPDLPKTIVRLATV 450

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+ + +  +E+ +M + E++  +L  LR+ GIS +LDDFG+  S L+YL  +P DT
Sbjct: 451 HGVPPTLLDVEVTENSLMSDVEKASGILAALREAGISASLDDFGSGYSSLAYLVRLPIDT 510

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +          A++R ++ +A ++    +A+ +  E   + L   GCD +Q  
Sbjct: 511 LKIDQSFVWALGKVPTATAVIRGVVRLAHSLGMRTLAEGVETEAQRQMLIEEGCDAMQGF 570

Query: 939 HVASPLGFNSILKLLKE 955
             +  L  ++   LL+E
Sbjct: 571 LFSRALPASAFAALLRE 587


>gi|91778026|ref|YP_553234.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91690686|gb|ABE33884.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 689

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 147/706 (20%), Positives = 268/706 (37%), Gaps = 69/706 (9%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +   +  +     AS   + L   +       + H  +    A L +  W + FI  +  
Sbjct: 7   LWLVVISFVVATLASYTALDLTGRIFLLASPRLRHVWRLGGAAALGVGIWSMHFIAMLAF 66

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            + I    D      +L   +    + +  T  + + AT   + G          AV+G 
Sbjct: 67  SLPIPLGYDFATTAASLGLAIAASYLALHITTREKLTATRLLAGG----------AVMGC 116

Query: 415 GDIVWDWDIVRDRVTTTPDIATILG---LASGSMHGPIRN---------WLPYIHIND-- 460
           G                     +            G +           WL     +D  
Sbjct: 117 GIA--------GMHYVGMAAMQMTPGIVYQPAWFAGSLAIAIGASSAALWLARALSDDDA 168

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADN-------------QFHWMIIRIRPMSNS-- 505
           R   R  L + +          +   AA                  W+   +   + +  
Sbjct: 169 RHVVRKRLAAALVMGVAISGMHYAGMAAAGFSPGAVCGAANGVNTTWLATSVILFTFAIL 228

Query: 506 ---------NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                    +      +G  ++          I+  A  D+LTG+PNR +  +R+   + 
Sbjct: 229 IVTLILSRFDARTTFLVGAVSN------LNGQIVRLATLDSLTGLPNRATLTERIEHAIH 282

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +    +L   V+ +D+D +K IND LG + GD VL +  +R+   ++  D +ARL G+ 
Sbjct: 283 RAQRQRSL-CAVLFMDLDGFKTINDSLGHSAGDQVLTAFAQRLLLCVRASDTVARLGGDE 341

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++     +       A  + + + M +    + + V  SIG A +     T   +LKN
Sbjct: 342 FVVLAEDLGSREDAGALAEGVLERMRMGMWTDSQPLQVMPSIGIALFPHDGDTVDSLLKN 401

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G +    F  S        + I+  L  A+   +  L + P      E 
Sbjct: 402 ADAAMYEAKRAGRSTYRFFERSMNEAAMRTLQIQNALHDALAAGQFSLHFQPKFHGGGES 461

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EALI+  HP+ G+++  EF+ IAE    I  I  +++    R I  W  Q   P +
Sbjct: 462 LAGAEALIRLHHPQLGDLAPLEFIPIAERSGQIVQIGYWVVRETCRQIRRWISQGL-PSM 520

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ + +L   L   M  ++        +I    +E+V M +  ++  ++ + +  
Sbjct: 521 KVAVNLSPRQMLQPNLVASMLEIVQAEGVQCEQIMFEITETVAMQDAPKTIEMIRQFQAC 580

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIET 911
           G  + +DDFGT  S L+YL       +K +     G      +  AI+ +II +A ++E 
Sbjct: 581 GFEIAIDDFGTGYSSLAYLQRFRVKQLKIDRFFTNGLDVHGPEGSAIVSAIIALAHSLEM 640

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++A+ +  E  +  L  M CD +Q   +  PL  +    LL+ER 
Sbjct: 641 DVVAEGVETESQLDMLRTMMCDEMQGFLLGKPLSADDFGNLLRERM 686


>gi|159185109|ref|NP_355183.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140380|gb|AAK87968.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 694

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 220/446 (49%), Gaps = 11/446 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D    ++++      +  D LTGIPNR +F++ L                ++ ID+D+
Sbjct: 236 VIDAQSTQQAVARYRHLSLHDPLTGIPNRAAFIEHLNR--RTRHISMGAHTALLSIDLDR 293

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+INDV G A GD VL ++  R   +LK  + LAR+ G+ F  +  S       A+FA 
Sbjct: 294 FKEINDVHGHAAGDAVLRAIADRASSVLKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQ 353

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + I+ P+    +  +V AS+G +   +  I +  ++  A++AMY AK    + +  +
Sbjct: 354 RLIEQISKPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMYRAKSATSDTICFY 413

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S   + R    +   +   + N+E  L Y          IVG EAL++W HP+ G +S
Sbjct: 414 DKSMDEAARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVS 473

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAE+   I  +  ++L         W+       + I +N+A + L DN+  + 
Sbjct: 474 PVEFIPIAEQTGFIVELGEWVLREACAQAARWKKS-----LAIAVNVAPQQLADNDFPDK 528

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++++T  +P R++L  +E  ++ +   + + + +L+ +G+ + +DD+GT  S LS L
Sbjct: 529 VERILAETGLAPERLELEITEGSIIADHRHALVTIRKLKSLGVKIAMDDYGTGYSSLSTL 588

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + + + G +      AI+RS + +A ++   ++A+ +  +  I+ L R G
Sbjct: 589 QSFPFDKIKIDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAHIEFLRREG 648

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C  +Q      P    SI  L+ + F
Sbjct: 649 CLQVQGFFFGKPGPLTSIANLVDDTF 674


>gi|317051911|ref|YP_004113027.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946995|gb|ADU66471.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 679

 Score =  449 bits (1156), Expect = e-123,   Method: Composition-based stats.
 Identities = 127/564 (22%), Positives = 246/564 (43%), Gaps = 15/564 (2%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456
               +R  L   A   +G+ +   D         P    I G     + G     L    
Sbjct: 112 LKREKRLLLYGSAFANTGEAIVIADRHGRIEEINPAFTQISGYQQHEVIGSNMRMLQSGR 171

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D   +R I  S   Y  G    E   R    + + + + I  +S++      Y+GI 
Sbjct: 172 H--DAAFYRQIWSSIEEY--GTWHGEVWNRRKSGEIYPVWLSIARISDAETGGTHYVGIM 227

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D++E  K+ + +      D LTG+PN+  F+  +   +  +    ++  +++ I +D Y
Sbjct: 228 HDLSELTKTRQQLEYQGLYDGLTGLPNKVLFMQHINQAIPRAN-FGSVGFSLLCIHVDNY 286

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K I +  G  +GD  L S + R+ +    P I+ R+  N   ++L    N   +      
Sbjct: 287 KDICNRGGTEMGDLFLQSFSLRLQKYFSAPAIMGRIRTNTLALLLPVMENHWDVMGAMRI 346

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVE 693
           +    + P+ L E   + T S+G   +       S +++NA +AM+  +      G    
Sbjct: 347 IFTCASQPVGLGEGRFSSTVSVGVTDYPGGGENGSALMRNALMAMHKVQEECADNGYLHY 406

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           S R+     ++  +K  L  AV+N EL + Y P + L    I G+EAL++W       IS
Sbjct: 407 SHRMRREILEQAALKSALASAVQNQELEIFYQPKVCLNTGTISGVEALLRWRKADGSFIS 466

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ +AE   +I  I  ++L+   R +  W D+ +   + + IN++ K   D +L   
Sbjct: 467 PAEFIPVAERSDLILEIGAWVLKSACRQLKKWHDEGHGH-LSVAINLSGKQFHDEQLPAM 525

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++ +T   P  + L  +E++++ N E +  ++ ++  +G+ L++DDFG   S L+YL
Sbjct: 526 IGDILRETALPPQSLNLEITENILIDNVENAIRIMEQISAMGVHLSIDDFGRGYSSLTYL 585

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P + +K + S +       K +AI  SII +   +   ++A+ +     +  + +  
Sbjct: 586 KRFPINVLKVDQSFVRDLPHGHKDVAIAMSIISLGSRLNLKVVAEGVETPEQLAFMQQHK 645

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C  +Q    +  +    +  +L+ 
Sbjct: 646 CTEMQGFLFSKAIDAEELGAMLRS 669


>gi|170768708|ref|ZP_02903161.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia albertii TW07627]
 gi|170122256|gb|EDS91187.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia albertii TW07627]
          Length = 652

 Score =  449 bits (1156), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 247/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 94  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQ--SV 147

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +S         + E  V+    Q  ++       S S  + +  
Sbjct: 148 FKLFMNRREAAISRRNNSGFFRSGNAYEVERWVQTRKGQRLFLFRNKFVHSGSGKNEIYL 207

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   +  +   D  +  V+ +D
Sbjct: 208 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDNAIKQA---DGNKVGVVYLD 264

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LARL G+ F I+  +  +   +  
Sbjct: 265 LDNFKKVNDAYGHVFGDQLLREVSLAILSCLEQDQVLARLGGDEFLILAPN-TSQSALEA 323

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P ++   E+    S+G +      + S+ ++++A+ AMY AK  G    
Sbjct: 324 MASRILTRLRQPFSIGLIEVYTGCSVGISLSPQHGMDSAAIIRHADTAMYTAKEGGRGQF 383

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN++L + Y P I     E+  LEAL++W  P+ G
Sbjct: 384 CVFSPEMNQRVFEYLWLDTNLRKALENNQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 442

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 443 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 500

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 501 FTDLKQVLQELKFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 560

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 561 SQLARFPIDAIKLDQIFVRDIYKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 620

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 621 KNGINERQGFLFAKPMPAVAFERWYKRYL 649


>gi|241765376|ref|ZP_04763350.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax delafieldii 2AN]
 gi|241364906|gb|EER59855.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax delafieldii 2AN]
          Length = 760

 Score =  449 bits (1156), Expect = e-123,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 205/443 (46%), Gaps = 11/443 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LT +PNR+   + +   L  S  DD+ R  ++++D+D +K IND LG  +GD
Sbjct: 305 HHLAYYDPLTNLPNRRLLKECIQAALAASNRDDHHR-ALLLLDLDNFKTINDTLGHELGD 363

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMRKSIAMP 644
             L+   +R+   ++ P  +AR+ G+ F +++         A       A  +  ++A P
Sbjct: 364 AFLMDTAQRLRHAVQAPHFVARIGGDEFVVLVDRLPADEAAALEQVNLLADQLLAAVAGP 423

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  +    +ASIG   +     T  ++LK A+ AMY AK+ G N+   F  +      
Sbjct: 424 CLLAGQWHHGSASIGICLFRHHNATIKDLLKRADAAMYQAKNAGRNNHCLFDPAMQAQLE 483

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  L  AV   ++ L +   +    +   G E L++W+HP  G +  ++F+ IAE
Sbjct: 484 TRTALEAALRTAVARGQMELHFQVQVNGAMQA-TGAEVLLRWNHPTHGPVPPAQFIPIAE 542

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I +I  ++L+R    + +W  QA+   + + +N++++     +    +   + +  
Sbjct: 543 ASGLIHSIGAWVLQRACAQLKAWDGQAHTRHLELAVNVSAQQFRHPDFVAQVCDALDRAG 602

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P  + L  +ES+V+ +   +   +  LR+ G+   LDDFGT  S LS+L  +P   +K
Sbjct: 603 ANPGLLVLELTESLVLHDIADTVQKMLALRRHGVRFALDDFGTGYSSLSHLKQLPLHHLK 662

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +G  +           I+++II MA+N+   +IA+ +  E   + L  + C   Q    
Sbjct: 663 VDGCFVRDIVTDPSDAVIVQTIIGMARNLGLCVIAEGVEAEAQRQVLLDLQCPVYQGYLF 722

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
           + PL      + L          
Sbjct: 723 SRPLPLAQFEQWLGMHCAATSAA 745


>gi|330447369|ref|ZP_08311018.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491560|dbj|GAA05515.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 675

 Score =  449 bits (1156), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 218/439 (49%), Gaps = 10/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+    I      D LTG+ NR  F  +L  ++        +   ++ IDID +K IN
Sbjct: 241 EIKRQQGHIEQLVQMDPLTGLLNRHGFTRQLEQLMKA-----EVPVVMLYIDIDNFKNIN 295

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD VL  + +R+  LL    I+  LSG+ F I+L +  +       +  +   
Sbjct: 296 DSLGHHIGDKVLQEIAQRLRRLLPETAIIGYLSGDEFAILLPNPEHERTGEIISEQIIAL 355

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +  P  L      +  SIG  +       +  ML+NA+ AMY AKHRG N +  F  S  
Sbjct: 356 VNQPFELRHFRKHLACSIGMVTSPGHGSDARMMLQNADTAMYEAKHRGRNRLVEFNDSMS 415

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L  A++N+ L + Y P +   D  I G EAL++W HP  G IS ++F+
Sbjct: 416 KEARMRLWLEIELQKALQNNGLEVWYQPKVNARDFAIDGAEALVRWKHPVEGYISPAQFI 475

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I+ +   ++  +   +  W+ +  +    + IN++ +   ++ L   +  L 
Sbjct: 476 PVAESSGLIEQLGCVVMREVFTTVSQWKKRKLLTG-RVAINLSPQQFGNSGLISFVDKLR 534

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T  +P+ I    +ES VM + E +  +L  ++++G +L++DDFGT  S LSYL   P 
Sbjct: 535 LSTDINPADITFELTESAVMSDGEHTVQMLNSIKQLGFALSIDDFGTGYSSLSYLARFPL 594

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +       K++ ++ +II + K+++ +++A+ I        L+ + CDYIQ
Sbjct: 595 DELKVDRAFIQDIDTIPKQVTLIENIINLGKSLKMSVVAEGIETRQQATLLSNLNCDYIQ 654

Query: 937 DSHVASPLGFNSILKLLKE 955
             H   P+  + +  +L +
Sbjct: 655 GFHFYRPMPKHELEAILLQ 673


>gi|309782784|ref|ZP_07677505.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA]
 gi|308918562|gb|EFP64238.1| developmental regulator MorA [Ralstonia sp. 5_7_47FAA]
          Length = 670

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/455 (27%), Positives = 222/455 (48%), Gaps = 26/455 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F +RL   L  +         ++++D+D +K +ND L
Sbjct: 190 QAEAHLDYLAHIDSVTELPNRHAFNERLQVSLKRAGQAG--AVGLLLLDLDNFKVVNDTL 247

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIAD-------- 632
           G   GD +L  + RR+ ++++      +L R+ G+ F +I      +   A         
Sbjct: 248 GHNNGDRLLRQVARRLNDVIEQANLRAVLCRIGGDEFAVIAELSGRAQIAATEAATLADG 307

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L   +I VTAS+G + +         + +NA+ AMYHAK+ G N  
Sbjct: 308 LAKRILAALAAPFALDLHQIYVTASVGVSLYPHDARDVQALTRNADTAMYHAKNHGKNAS 367

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE----------EIVGLEA 740
            SF     +  R  +  + DL  A++  EL L Y P +RL  E           + G+EA
Sbjct: 368 ASFTSEMDQQARRRLRVEADLRRALDRDELLLAYQPQVRLRTEGAHDAVISKANVYGVEA 427

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  + L++L    +  + W  +  +  + + +N+
Sbjct: 428 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGLWVLRTACQQAVRWMREEGIT-LRVAVNL 486

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++   D  L E +  ++ +T   P +++L  +ESV+M + E +  LL  L   GISL++
Sbjct: 487 SARQTRDPALVENVMDVLRETGLPPHQLELEITESVLMEDIEANIALLESLHAAGISLSI 546

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K + S +        AI  ++I MA ++   ++A+ +  
Sbjct: 547 DDFGTGYSSLAYLQRFPIQKLKIDRSFVQRMPGDGEAIAGAVIAMAHSLRMQVVAEGVED 606

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +  L   GCD  Q    + P   +++L  L  
Sbjct: 607 PEQLALLRDAGCDLGQGYLFSRPQQADALLAWLNR 641


>gi|296157943|ref|ZP_06840776.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. Ch1-1]
 gi|295891711|gb|EFG71496.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. Ch1-1]
          Length = 689

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 144/706 (20%), Positives = 265/706 (37%), Gaps = 69/706 (9%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +      +     AS   + L   +       + H  +    A L +  W + FI  +  
Sbjct: 7   LWLVAISFVVATLASYTALDLTGRIFLLASPRLRHVWRLGGAAALGVGIWSMHFIAMLAF 66

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            + I    D      +L   +    + +  T  + + A+   + G+              
Sbjct: 67  SLPIPLGYDFATTAASLGLAVAASYLALHITTREQLTASRLLAGGVV------------M 114

Query: 415 GDIVWDWDIVRDRVTTTPDIATILG---LASGSMHGPIRN---------WLPYIHIND-- 460
           G  +                  +            G +           WL     +D  
Sbjct: 115 GCGI------AGMHYVGMAAMQMTPGIVYQPAWFAGSLAIAIGASSAALWLARALSDDDA 168

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADN-------------QFHWMIIRIRPMSNS-- 505
           R   R  L S +          +   AA                  W+   +   + +  
Sbjct: 169 RHVVRKRLASALAMGIAISGMHYAGMAAAGFPPGVVCGAANGVSTTWLATSVILFTFAIL 228

Query: 506 ---------NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                    +      +G  ++          I+  A  D+LTG+PNR +  +R+   + 
Sbjct: 229 IVTLMLSRFDARTTFLVGAVSN------LNGQIVRLATLDSLTGLPNRSTLTERIEHAIH 282

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +    ++   V+ +D+D +K IND LG +VGD VL +  +R+   ++  D +ARL G+ 
Sbjct: 283 RAQRQRSM-CAVLFMDLDGFKTINDSLGHSVGDQVLTAFAQRLLLCVRASDTVARLGGDE 341

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++     +       A  +   + M +    + + V  SIG A +     T   +LKN
Sbjct: 342 FVVLAEDLGSREDAGALAEGVLDRMRMGMWTDSQPLQVMPSIGIALFPHDGDTVDSLLKN 401

Query: 677 AELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G +    F  S        + I+  L  A+   +  L + P      E 
Sbjct: 402 ADAAMYEAKRAGRSTYRFFERSMNEAAMRTLQIQNALHDALAAGQFSLHFQPKFHGGGES 461

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EALI+  HP+ G+++  EF+ IAE    I  I  +++    R I  W  Q   P +
Sbjct: 462 LAGAEALIRLHHPQLGDLAPLEFIPIAERSGQIVQIGYWVVRETCRQIRRWISQGL-PSM 520

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ + +L   L   M  ++        +I    +E+V M +  ++  ++ + +  
Sbjct: 521 KVAVNLSPRQMLQPNLVANMLEIVQAEGVQCEQIMFEITETVAMQDAPKTIEMIRQFQAC 580

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIET 911
           G  + +DDFGT  S L+YL       +K +     G      +  AI+ +II +A ++E 
Sbjct: 581 GFEIAIDDFGTGYSSLAYLQRFRVKQLKIDRFFTNGLDVHGPEGSAIVSAIIALAHSLEM 640

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++A+ +  E  +  L  M CD +Q   +  PL  +    LL+ER 
Sbjct: 641 DVVAEGVETESQLDMLRTMMCDEMQGFLLGKPLNADDFGNLLRERM 686


>gi|325916983|ref|ZP_08179225.1| diguanylate cyclase/phosphodiesterase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536834|gb|EGD08588.1| diguanylate cyclase/phosphodiesterase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 705

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 231/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L+ + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLNSA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK----FPDILARLSGN 615
              N +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSSNSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVSALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDANDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W +      
Sbjct: 483 VLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEMIGPKVLRAACLEAAQWPEVG--EG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +FI +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFISVNVSPRQLRSGDLIDTVAECLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPADLVKLIAA 704


>gi|114320250|ref|YP_741933.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226644|gb|ABI56443.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 768

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 129/494 (26%), Positives = 224/494 (45%), Gaps = 5/494 (1%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D  R + +       G L+ E R     NQ                 +    G+   +  
Sbjct: 273 DAMRALSERLQDQVVGELRAEARSLQRTNQQVVAATAGLLTITLLLSVGIGRGLYRQLEG 332

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +++  E I   A  D LTG+PNR  F D LT  L+ +   +  +  + ++D+  + +IN 
Sbjct: 333 RRRDAERIEYLATHDPLTGLPNRTLFQDHLTECLNRA-RAEGHKVGLHMVDLQGFTEINA 391

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD +L +L  R+ E+L    I+AR  G+ F II  +      I   A   R+++
Sbjct: 392 TWGDEVGDRILQTLAHRLEEVLPADAIIARPYGDDFAIIQPAIRAEGDIHTVAETARRAV 451

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +  R I +    G A +     +++ ++    LA+  AK +GG  V    +S   
Sbjct: 452 EKTLRIGPRRIRLRGRAGAACFPEHGESANSLMTATTLALQEAKAKGGTCVYVRGMSDRF 511

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  +  DL  A+E  EL L Y   + L    + G E L++W HP  G +   +F+  A
Sbjct: 512 QARQSLARDLEHALERGELLLNYQTKVDLASGRLAGAEVLLRWHHPVRGLVPPDQFIPEA 571

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++LE   R    W DQ    P+ + +N++S      +L + ++A +++T
Sbjct: 572 EKSGLIVNIGQWVLETACRQGRRWLDQGR--PVQLAVNLSSAQFRQADLVDQVKATLTRT 629

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ ++L  +E+ VM + + S   L  LR++G+SL +DDFGT  S L+YL   P   +
Sbjct: 630 GLPPTLLELEITETAVMMDMDTSVRTLQALRELGVSLAIDDFGTGYSSLAYLRRFPVSVL 689

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G        AI  +++ + + +  +++A+ +  E     L ++GCD  Q   
Sbjct: 690 KLDRSFVDGMEHGGDPAAIAAAVVQLGQVLSLSVVAEGVETEAQAAALRQLGCDLAQGYL 749

Query: 940 VASPLGFNSILKLL 953
            A P         L
Sbjct: 750 YARPQPAEQFEAQL 763


>gi|325921162|ref|ZP_08183031.1| diguanylate cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
 gi|325548356|gb|EGD19341.1| diguanylate cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
          Length = 705

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 231/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L+ + 
Sbjct: 246 HPRNDEIGELMSAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLNTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK----FPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVGALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + +L  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVTLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDANDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R +D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTIDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I  S F+ IAE+  +I+ I   +L     +   W +      
Sbjct: 483 VLVGVEVLLRWQHPALGTIPPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWPEVG--EG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +FI +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFISVNVSPRQLRSGDLIDTVAECLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIIGMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRDRGCDLGQGYWFSRPLSPADLVKLIAA 704


>gi|59711101|ref|YP_203877.1| modulator of RNase II stability [Vibrio fischeri ES114]
 gi|59479202|gb|AAW84989.1| modulator of Rnase II stability [Vibrio fischeri ES114]
          Length = 675

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 146/580 (25%), Positives = 255/580 (43%), Gaps = 37/580 (6%)

Query: 389 HVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLA-SG 443
           H + T    Q + S  E   +         D V+   I  D +       A +LG     
Sbjct: 111 HAVDTSERQQLLNSLKESESKYHKLTELLSDSVFL--IEGDIIVSANGASAKMLGFNNPT 168

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G   +    +H   R      L   +       Q   R            +R   + 
Sbjct: 169 EFIG--ESIEQLLHSPSR---TQCLSELISSLPSEQQLTVR------TTANCSLRAELIL 217

Query: 504 NSN-----GDILRYIGIANDITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDL 557
                   G     + +  +   +K+        A Q D LTGI NR  F   +  ++  
Sbjct: 218 TVEETHILGSPAHLVILKEN---KKQIAMSNHIAASQVDLLTGIYNRHGFTHVIEKMIK- 273

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
               +++   ++ +DID +K IND LG  +GD VL  ++ R+ +LL    ++  L G+ F
Sbjct: 274 ----EDIPFFMLYLDIDNFKNINDSLGHHIGDRVLKEISNRLQKLLPKHAVVGHLGGDEF 329

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           GI+     ++  +   +  +   I  P +L+     +  SIG   + +    +  +L+NA
Sbjct: 330 GILFPKPEHNQVLEQLSEKIISLINQPFDLVHFSKRLACSIGSVQYPADGSDARSLLQNA 389

Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + AMY AK RG N +  F          R+ ++ +L  A++N+ L + Y P +   D  I
Sbjct: 390 DTAMYEAKDRGRNRLIKFHDQMNKEARMRLWLEIELQKALQNNGLEVWYQPKVSARDFRI 449

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EAL++W HP  G IS + F+ +AE   +I+ +   ++  + + +  W++Q  + P  
Sbjct: 450 NGAEALVRWKHPVEGYISPARFIPVAERSGLIETLGKVVMREVFQTVKEWKNQ-GILPGR 508

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN++ +   + +L E M+ L+  T   P+ I L  +ES VM + E +  +L  ++K+G
Sbjct: 509 IAINLSPEQFGNPQLIEYMERLLKTTQVDPNCITLELTESAVMSDGEHAIQMLDAIKKLG 568

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
            +L++DDFGT  S L+YL   P D +K +   +       K+I I+ ++I + KN+   I
Sbjct: 569 FTLSIDDFGTGYSSLAYLARFPLDELKIDRGFINEIDTLPKQITIIENVINLGKNLNMDI 628

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A+ +        L+ + CD IQ  H   P   + I  LL
Sbjct: 629 VAEGVETRQQAMLLSSLNCDSIQGFHFYKPQPKHEIEALL 668


>gi|85711994|ref|ZP_01043048.1| Signaling protein with a ligand binding sensor domain, GGDEF and
           EAL domains [Idiomarina baltica OS145]
 gi|85694180|gb|EAQ32124.1| Signaling protein with a ligand binding sensor domain, GGDEF and
           EAL domains [Idiomarina baltica OS145]
          Length = 741

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/448 (26%), Positives = 219/448 (48%), Gaps = 7/448 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I + ++I E+++  + I   A  D LT + NR + +  L+  L   A +      ++ ID
Sbjct: 287 IELYSEIDERERVEKEIAYLAEHDALTRLINRNALMRILSEWLADDAKNG--LTAILFID 344

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K++ND LG  VGD+++  + RRI +L     +LAR  G+ F + +    +   I  
Sbjct: 345 LDRFKEVNDALGHTVGDELIKRVARRIKKLAPNEAVLARSGGDEFLLAVPHSTSREHILT 404

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  + +++     + E E+ ++ASIG A    +      +++NA+ A+Y AK  G N  
Sbjct: 405 LADQLLQALDAHFYVDEYELFISASIGIAFAEDADNNPEYLIRNADTALYQAKDNGRNTY 464

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +  +  R     ++  + L  AVE   L + Y P + L+   I GLEAL++W      
Sbjct: 465 HIYSQAVHRDLAKKLEMVKQLRHAVEQEALEVYYQPKVELLGHRITGLEALVRWVKDDGT 524

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ IAE+  +I  ++ +++      +  W +      + + INI+ K L   +L
Sbjct: 525 VIGPDQFIPIAEDTGLIIPLSEYVMRTACNQLKRWHEMGFN-DLTMAINISGKQLHLPDL 583

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +   +S+   SP  I+L  +E V + N +     +  +R+ G+SL +DDFG   S L
Sbjct: 584 VDTIVDNVSEARLSPKCIELELTEQVFIENIQSHTNFMHSVREHGMSLAIDDFGVGYSSL 643

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   P  ++K + S +      E    I+++II +AKN+   ++A+ I     ++ L 
Sbjct: 644 SYLKNFPVTSLKIDRSFVRDLPDNEDDAVIVQTIINLAKNLNIQLVAEGIETSEQVEFLL 703

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
              C   Q    + P+  + I +LL+  
Sbjct: 704 SRDCGIGQGYLFSRPVPADEITQLLQNY 731


>gi|330873862|gb|EGH08011.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 712

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 242/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D         P I
Sbjct: 122 VLKPKVQTLLEQQRNRRALQQLSMELESARTFNASVLANVAEGILVVDEAGKISFANPAI 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R A      
Sbjct: 182 CQLLNASVDQLRGTQVLDY-VIEPQVGSWLESGFYQHYRKADTYRVHDAILRTAQGSQLP 240

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 241 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 297

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 298 LLRNERADKY-LVVLFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGG 356

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +IT+ AS+G A++         +L
Sbjct: 357 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVNGVDITLGASVGIATFPDCGSNLDGLL 416

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 417 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVGD 476

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W      P
Sbjct: 477 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQAWSGVFA-P 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E  ++ N   S   L  L 
Sbjct: 536 DVVLSVCVSPTQFCMPNLASELKRAMDRFDLKPGQIEVEITEGSLVHNLTHSHKQLKLLH 595

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +    E R   A+ RSII +++N++
Sbjct: 596 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVESRREAAMARSIIDLSRNLD 655

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 656 MLVIAEGVETVEQYQWLADNGCQVMQGFLIAHPMVAEDALHF 697


>gi|163760948|ref|ZP_02168026.1| hypothetical protein HPDFL43_02894 [Hoeflea phototrophica DFL-43]
 gi|162281729|gb|EDQ32022.1| hypothetical protein HPDFL43_02894 [Hoeflea phototrophica DFL-43]
          Length = 768

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 131/607 (21%), Positives = 261/607 (42%), Gaps = 42/607 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQG---IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +++ G    +H       ++    +    +R +LA+  S   VW+ D     +T      
Sbjct: 167 ILVAGHFYDRHRADIKELNRRERLLQQLSQRLTLALETSKIGVWEMDTDSGDLTWDSRTR 226

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            + G+   +    + +W   +H  DR       +  +         EFRV + +    W+
Sbjct: 227 ELYGIDDDTTQLRVEDWKNALHPEDRVRAEVEFEHSL-NSSAPYNSEFRVVSRNGDLRWI 285

Query: 496 IIRIRPMSNSNGDILRYIGIANDIT---------------------EQKKSLEGILCNAF 534
                    ++G   + IG+  D++                     E + +   +  N+ 
Sbjct: 286 RTIGAINQETDGR-RKIIGVNWDVSQDIELKDHLMTAMESAELRNLELEDARAQMEYNSL 344

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+PNR+     LT       + D     ++ ID+D++K+IND LG A GD +L+ 
Sbjct: 345 HDSLTGLPNRRYLDQHLTQA-----SKDKSITALLHIDLDRFKQINDTLGHAAGDAMLIH 399

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               + E  +  D +AR+ G+ F + + SE    +++  A  +   I  P+   + E   
Sbjct: 400 TASILQESSRAGDFIARIGGDEFVLAITSETGEPELSRIASRIIDRIRKPVPYGKHECRF 459

Query: 655 TASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
             SIG A     +      +L +A++A+Y AK  G N  E F  S  +       + +D+
Sbjct: 460 GVSIGIAFADLETPSCGERLLIDADIALYRAKSNGRNRFEFFTSSLKAEIIHNKRVADDI 519

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              +E  E    + P       E++G+EAL +WDHPK G +   +F+  A EL ++  I+
Sbjct: 520 LNGLERGEFLPYFQPQFDAQSLELIGVEALARWDHPKDGLLVPDQFLQTANELNVVHLID 579

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +L+++      W+      P    +N+++    +++L E ++ L     ++P  +   
Sbjct: 580 RSILKQVLWHSTRWKAAGIDVPKT-GVNVSAGRFHEDDLIESLEGL----SFTPGTLSFE 634

Query: 832 FSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             ES+ +    E     + +L+++GI + +DDFG+  + +  L  +    +K +  L+  
Sbjct: 635 LLESIFLDERDETVTRNIAKLKQLGIEIEIDDFGSGYASIVSLLQVRPSRLKIDRQLILP 694

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +  +  +  SII + +++   +IA+ +        L  MGCD +Q   +A P+    
Sbjct: 695 IVNSSSQRRLAGSIIEIGRSLNIRVIAEGVETMEHAAILRDMGCDDLQGYALARPMPSAQ 754

Query: 949 ILKLLKE 955
           +++ +K 
Sbjct: 755 LIEFMKN 761


>gi|194366517|ref|YP_002029127.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
 gi|194349321|gb|ACF52444.1| diguanylate cyclase/phosphodiesterase [Stenotrophomonas maltophilia
           R551-3]
          Length = 708

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/460 (27%), Positives = 228/460 (49%), Gaps = 11/460 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G+++R      D   +      +   A+ D LTG+ NR +F + L   L ++A   N
Sbjct: 250 DEVGELVRGFASMRDAIARH--DREVRRMAYTDALTGLTNRLAFREALDHRL-MAARASN 306

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGI 619
            R  ++  DID +K++ND LG   GD+ L+   +RIG  +        +LAR  G+ F I
Sbjct: 307 HRLGLLFADIDDFKRVNDTLGHEAGDEALLQFAQRIGRAVTDAGGDEALLARFGGDEFVI 366

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++   + +      A  + + +  P+ +  RE+ +  SIG   +      ++ +LKN ++
Sbjct: 367 LVGDGDVAANARLLAEVLVRELGKPLVVQGRELFLGTSIGVTLFPDDAADATTLLKNGDI 426

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N    +  +   +      ++++L  A E  EL L Y PI R+ D  +VG
Sbjct: 427 AMYQAKMAGKNCYRYYSRAMDHAVERRVHMEQELRGAWERGELRLAYQPIFRMRDRRMVG 486

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +E L++W HP  G I  S F+ +AE+  +I+ I   +L     +   W   A    +F+ 
Sbjct: 487 VEVLLRWQHPTLGTIPPSVFIEVAEQSGLIEIIGPKVLRAACIEASQWPRGAAGDDLFVS 546

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ + L   EL   +   + ++    SR+ L  +E+ V+G+   +  LL +L + G+ 
Sbjct: 547 VNVSPRQLRGGELPALVAQCLHESGLPASRLHLELTETAVIGDEMVAAQLLDKLHRTGVK 606

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA  +  T++A
Sbjct: 607 VWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADMQRDPDDLALTTAIIAMAHALGITVVA 666

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + I  +   + L + GCD  Q   ++ P+    ++++++ 
Sbjct: 667 EGIEQQAQFELLAQRGCDLGQGYWLSHPVTATEVVRMIES 706


>gi|254491449|ref|ZP_05104628.1| hypothetical protein MDMS009_1784 [Methylophaga thiooxidans DMS010]
 gi|224462927|gb|EEF79197.1| hypothetical protein MDMS009_1784 [Methylophaga thiooxydans DMS010]
          Length = 1203

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 223/565 (39%), Gaps = 22/565 (3%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH- 457
                  E+ SLAV  S + +   D   +     P   +I G  +    G    W   I+ 
Sbjct: 646  ASQQKLEKLSLAVEHSPNAIVVMDRAGEIEYVNPKFTSITGYHNDEKLGR---WPDLINS 702

Query: 458  ----INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                    D     +      R    + E + R  +   +W    I PM NS G    ++
Sbjct: 703  GVNMPGIYDEIWQTIR-----RGDDWRGELQYRKKNGDLYWAQELIAPMLNSEGHATHFV 757

Query: 514  GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
                DITE ++  E     A  D LTG+ NR  F  RL  ++ L+A  +     +  +D+
Sbjct: 758  ATQIDITEARRLSEETSYQATHDQLTGLINRHEFDLRLERVV-LAAKHNLTEHALCFLDL 816

Query: 574  DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            D++K +ND  G   GD++L  +   +   ++  D +ARL G+ F +++   +        
Sbjct: 817  DQFKLVNDTCGHIAGDELLRQIGSLLQSNVRSRDTIARLGGDEFAVLMEHCSIDRAYKAC 876

Query: 634  AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
               ++       +  +   TV  SIG A        S+E LK+ + A Y AK  G N VE
Sbjct: 877  EQILQLLQDFRFHWQDYTFTVGGSIGLAIIDQHTRDSNEALKHVDTACYSAKDAGRNRVE 936

Query: 694  SFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPK 748
              R        R   +    ++  A+++    L   PI   +  E  +  E L++     
Sbjct: 937  VHREDSLRLKQRRGEIHWSTEINDALDDDRFLLYAQPIQPVMNPERGMSYEVLVRMLRKD 996

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
                    F+  AE    I  I+ +++      +     + N     + IN++   + D 
Sbjct: 997  GEISPPGAFLPAAERYNSINRIDRWVVSHTFDWLNKNAAKLNKVA-TVSINLSGLSMGDE 1055

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             +   +   +        +IK   +E+  + N   +   +  LR+ GI  +LDDFG+  S
Sbjct: 1056 SMLTFIIEQLETAKIPAEKIKFEITETAAIANLRAATKFIETLRESGIHFSLDDFGSGLS 1115

Query: 869  LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
              +YL  +  D++K +G  +           +++SI  +   +    IA+ +  E  + +
Sbjct: 1116 SFAYLKKLKVDSLKIDGMFVKDMLIDPLDFEMVKSINEIGHVMGLETIAEFVESEAILAK 1175

Query: 927  LTRMGCDYIQDSHVASPLGFNSILK 951
            L+ +G D++Q   +  P   + IL 
Sbjct: 1176 LSEIGVDFVQGYAIGKPAPIDDILN 1200



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 8/156 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW--DIVRDRVTTTPDIATILG 439
               V +        S+ +    ++    V    D  + +  D+        P +  ILG
Sbjct: 506 FENEVAKKTRELQRRSELLAKSEKKYRRLVENLQDEYFLYSHDVNGIFNYVGPSVTLILG 565

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWMIIR 498
            +       ++++L ++   + +    +     +   +   + E  +       H + + 
Sbjct: 566 YSQEEF---LQHYLSFLPETEVNQLVPLFTEHTLAGYKSNYEVE--ILDKKGGLHTLAVT 620

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             P  N N +++   GIA DITE K S + +   + 
Sbjct: 621 EVPSYNDNKEVIGVEGIARDITEFKASQQKLEKLSL 656


>gi|107023291|ref|YP_621618.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia AU
           1054]
 gi|105893480|gb|ABF76645.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia AU
           1054]
          Length = 790

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + + A+    R  ++ ID+D +K +N  LG 
Sbjct: 339 EREMTQLAEYDLLTGLANRYATLRGLRNDVSMPASLS--RLGLLFIDLDNFKTVNGTLGH 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +    P 
Sbjct: 397 NAGDIVLQMTASRLADAVGDEGSLARIGGDEFVVVMKGDDVERRAVRLAEAIIRMFGEPF 456

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  T +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 457 DVRGSSFVLHASIGIALHTVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 516

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL +WDHP+ G IS++EF+ IAE 
Sbjct: 517 LMRWEQQLRVALAEGQLFLAYQPKIDLTHRTITGFEALARWDHPEHGVISANEFISIAES 576

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      I  WRD+ +   + + +NI+       +L E +   +  T  
Sbjct: 577 TGLIVPIGDFVIRTACEQIARWRDEGHDT-LTLAVNISPVQFWRGDLIETISQALQDTGI 635

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 636 PANRLEIEITETAMMEYPELVSEKIVALKKLGIRIALDDFGTGYSSLSYLHRFSVDTLKV 695

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L+ +G    Q    +
Sbjct: 696 DRSFVQAIPNDRSVCVMVSSIVHLARSLGLTVVVEGTETEEQITWLSALGEIEAQGFLFS 755

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  L+  
Sbjct: 756 RPVPADAIPALIAR 769


>gi|15599563|ref|NP_253057.1| BifA [Pseudomonas aeruginosa PAO1]
 gi|116052401|ref|YP_792712.1| GGDEF domain/EAL domain-containing protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893458|ref|YP_002442327.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|254238970|ref|ZP_04932293.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|296391074|ref|ZP_06880549.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           PAb1]
 gi|313106896|ref|ZP_07793100.1| putative GGDEF domain-containing/EAL domain-containing protein
           [Pseudomonas aeruginosa 39016]
 gi|9950595|gb|AAG07755.1|AE004852_8 BifA [Pseudomonas aeruginosa PAO1]
 gi|115587622|gb|ABJ13637.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170901|gb|EAZ56412.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218773686|emb|CAW29500.1| putative GGDEF domain/EAL domain protein [Pseudomonas aeruginosa
           LESB58]
 gi|310879602|gb|EFQ38196.1| putative GGDEF domain-containing/EAL domain-containing protein
           [Pseudomonas aeruginosa 39016]
          Length = 687

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ + +L  +  D LTG+PNRQ    +L  ILD +      R  V+ + +D +K IN+
Sbjct: 239 RREAEDNLLRISQYDFLTGLPNRQLLQQQLDQILDGAGRQQR-RVAVLCLGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                +GD +L++L  R+         LARL G++F ++        + A+ A ++   +
Sbjct: 298 QYTYQLGDQLLIALADRLRGHSARLGSLARLGGDQFALVQADIEQPYEAAELAQSILDGL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + + E+ + A+IG   +     T+ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFEIDQHEVRLRATIGITLFPEDGETTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A++  EL+LVY P +   D  +VG+EAL++W HP  G +    F+ 
Sbjct: 418 EMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  N L   +  L+ 
Sbjct: 478 LAEQNGSIFSIGEWVLDQACRQLREWHDQGFD-DLRMAVNLSTVQLHHNALPRVVSNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 VYRLPARSLELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      E    I+R+II + K++   +IA+ +        +   GC+  Q 
Sbjct: 597 KIKIDKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCNEGQG 656

Query: 938 SHVASPLGFNSILKLLKERFPLVKNT 963
              + PL    + + LK+   L + T
Sbjct: 657 YLYSKPLPARELTQYLKQARRLSQAT 682


>gi|313682576|ref|YP_004060314.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155436|gb|ADR34114.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 652

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 223/438 (50%), Gaps = 7/438 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   +  D+LTG+PNR S   ++  ++  +   D  +  V+ +D+D +K IND LG
Sbjct: 207 LNEELTFASLHDSLTGLPNRHSLYTQMKLMVANANRYDR-KFAVLFLDLDHFKNINDTLG 265

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD++L ++ +++  +++  DI+AR+ G+ F +IL   NN++ I      +       
Sbjct: 266 HHVGDELLKAVAQKLNSIVRENDIVARIGGDEFIMILSDFNNAVTIEPVISKILDMFHQE 325

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
             +    + ++ SIG + +       +E++K A++AMY AK  G +    F    ++   
Sbjct: 326 WRIQSHFLRLSTSIGVSVYPDDSKDINELMKYADIAMYKAKSEGRDQFSFFTTTLNAKVH 385

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + V I  D+  A  + E  L Y P I +   +IVG EALI+W+H + G IS   F+ IAE
Sbjct: 386 EEVAIANDMYRAFSDGEFELYYQPKIHIESGKIVGAEALIRWNHYQKGMISPDHFINIAE 445

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  +++E  A  I   +D      + I  N++++   +  L   ++  I K  
Sbjct: 446 NTGFILKLGTWIIEETAHTIKRLQDAGYDR-VHISCNVSTRQFQNLNLYGEIKNAIQKNK 504

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P  + +  +ESV++   E +   L +++ +G+++ +DDFGT  S LSYL  +P D++K
Sbjct: 505 INPKLLAIEITESVMLDYLEITLETLKKVKALGVNICMDDFGTGYSSLSYLRQLPIDSLK 564

Query: 883 FNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            + S +   +   +    +L +II M + +   +IA+ +  E  ++ L   GC Y Q  +
Sbjct: 565 IDKSFVDDISCCEQNETILLNTIIAMGQTLNLHVIAEGVEEEYQMQYLKNRGCGYYQGYY 624

Query: 940 VASPLGFNSILKLLKERF 957
            + P+   +  +LL+  +
Sbjct: 625 FSRPVPEKTFFELLRTNY 642


>gi|298488828|ref|ZP_07006854.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298156628|gb|EFH97722.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1198

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 132/493 (26%), Positives = 235/493 (47%), Gaps = 11/493 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 710  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 768

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                 ++ R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 769  ESEQENHLRYILKQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 826

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 827  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 885

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  + +          
Sbjct: 886  KPINDSLGHAAGDRMLQEMATRLLACVSSDDTVARMGGDEFTLLLQPDTSREAALTRAIH 945

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 946  VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 1005

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 1006 QFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1065

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1066 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1124

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S L
Sbjct: 1125 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYSSL 1184

Query: 871  SYLGYIPFDTVKF 883
            +YL   P D +K 
Sbjct: 1185 NYLKQFPIDVLKI 1197



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 561 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGQLAVNYVSPSVERALGYSAE 620

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDS-----FVGYRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 621 WILQN--GWSAVIANPQQVIGFDALISRIGKVLHKPQELARLREEVTTRMFLFDCLRADG 678

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + NG+     G+  DI++Q+++ + +   A 
Sbjct: 679 RKIPVELRVVLVWDENGNFEGIFGVGRDISQQRRAEKDLRMAAT 722



 Score = 58.0 bits (139), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 428 ILSIGDITSRKQIELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 487

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +      +    +H +D  +++ + L          LQ   R R  +N +    +R +
Sbjct: 488 SELRAMGEFFWEILLHPDDARSYQDMRLRQRHHGHNELLQCVLRFRDRENNWRCFDVREQ 547

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  ++   + R IGIA DITEQ       + S +     A
Sbjct: 548 ALAWDAENLVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 588



 Score = 38.4 bits (88), Expect = 6.7,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 58/190 (30%), Gaps = 38/190 (20%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR--- 425
            A + G  LI +L+    +  +++     + +     R      G+G  +   D+     
Sbjct: 254 LAPLIGKCLIGLLLSILPLIALMSLRKRQRQMLQSRRRYRDIFEGAGVAICVMDMSGLQE 313

Query: 426 ----DRVTTTPDIATILGLASG----------------------SMHGPIRNWLPYIHIN 459
                 V T  D   +L                            +    + W P I   
Sbjct: 314 QLEALEVRTDEDFELLLKSQPASLKRLLQQLRINELNEVALGLLEIEHSEQAWQPLIEGE 373

Query: 460 DRDN---FRTILDSFVGYRRGRLQYEFRVRAADN--QFHWMIIRIRPMSNSNGDILRYIG 514
            R        ++ + +     RL+ E  +  A    Q  W+++R   +  S  D    I 
Sbjct: 374 SRSRPGIGVQVIQAVLAG-LPRLELEICLTRASGQDQHLWLVMR---LPESRSDFDAVIL 429

Query: 515 IANDITEQKK 524
              DIT +K+
Sbjct: 430 SIGDITSRKQ 439


>gi|289648166|ref|ZP_06479509.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 820

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 247/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLCDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 793


>gi|58427077|gb|AAW76114.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 781

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         ++ I+ID++K IN
Sbjct: 343 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALVFINIDRFKLIN 401

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RI + L    +LARLSG+ F + L    ++ + +  A  +  S
Sbjct: 402 DSQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQC-SAEQASAVAERVLVS 460

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 461 IANPLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADMN 520

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P I       + G+EAL++W+HP+ G +S ++F
Sbjct: 521 RMAQERVALEAELRQAIGRDQLQLHYQPQIHSAAPHTLYGVEALLRWNHPQLGAVSPAQF 580

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 581 LQVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLQL 639

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+     PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 640 IADMGVKPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 699

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A++ S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 700 IDELKLDMSFVRDIEHSEDARALITSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 759

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 760 QGYLFSRPLPAAALEAWLGAQ 780



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q         + A+ GS   +   D+    +        + G     + G   + + 
Sbjct: 57  AGEQPEQRRSRLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGQRPSDVL 116

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               +D+     + D     +    + E  V   D    W+ +   P+ +++   L Y+ 
Sbjct: 117 TRAQSDQSEVARVRDRADALQ--HTRAELLVYRKDGTPLWISLNFNPIYDADHTPLHYVA 174

Query: 515 IANDITEQKKSL 526
           +  DIT+ K   
Sbjct: 175 VLTDITDTKMHE 186


>gi|58582331|ref|YP_201347.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624210|ref|YP_451582.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576187|ref|YP_001913116.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|58426925|gb|AAW75962.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368150|dbj|BAE69308.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520639|gb|ACD58584.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 705

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 229/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L+ + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLNTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
                +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTGSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGDDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVMLLQSGDVSLLAAQLAERLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVRMEHELRGAWERDELLLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPTLGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--LVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFVSVNVSPRQLRSGDLIDTVAQCLAESGLPAARLHLELTETAVIGDEMMAARLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPADMVKLIAA 704


>gi|152985064|ref|YP_001350274.1| putative lipoprotein [Pseudomonas aeruginosa PA7]
 gi|150960222|gb|ABR82247.1| lipoprotein, putative [Pseudomonas aeruginosa PA7]
          Length = 686

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 218/446 (48%), Gaps = 6/446 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ + +L  +  D LTG+PNRQ    +L  ILD +      R  V+ + +D +K IN+
Sbjct: 239 RREAEDNLLRISQYDFLTGLPNRQLLQQQLDQILDGAGRQQR-RVAVLCLGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                +GD +L++L  R+         LARL G++F ++        + A+ A ++   +
Sbjct: 298 QYTYQLGDQLLIALADRLRGHSARLGSLARLGGDQFALVQADIEQPYEAAELAQSILDGL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + + E+ + A+IG   +     T+ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFEIDQHEVRLRATIGITLFPEDGETTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A++  EL+LVY P +   D  +VG+EAL++W HP  G +    F+ 
Sbjct: 418 EMRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  N L   +  L+ 
Sbjct: 478 LAEQNGSIFSIGEWVLDQACRQLREWHDQGFD-DLRMAVNLSTVQLHHNALPRVVSNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 VYRLPARSLELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      E    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKERFPLVKNT 963
              + PL    + + LK+   L + T
Sbjct: 657 YLYSKPLPARELTQYLKQARRLSQAT 682


>gi|188492505|ref|ZP_02999775.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 53638]
 gi|188487704|gb|EDU62807.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 53638]
          Length = 661

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQGFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|330964789|gb|EGH65049.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 818

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 129/596 (21%), Positives = 259/596 (43%), Gaps = 18/596 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLMAVNLFTAVVLILLALLRVRRLIVQRRLFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            D+    V   P    +    S    G P+      +  ND+ +  T++D  V  +    
Sbjct: 261 IDVAGTIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDSSTLIDQIVTGKLKGG 320

Query: 480 QYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + + ++  D     + +   P+  + G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SADSKLIQRLDGSTVSVALVGTPIY-TEGVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD S +  +    +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFERRLQQVLDDSTSGSHC---LMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 436

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+    +    D A A+R+ +         R    T S
Sbjct: 437 LPQGLRDGDTLARLGGDEFGVLLVDCT-ASTAHDIAEALREIVQGLHFMWKGRPFMTTVS 495

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  T    L  A++A Y AK +G N V+ + V       R   +   + L +
Sbjct: 496 IGLVHLGDTPATLEGSLSAADMACYMAKEKGRNRVQVYSVDDLTLSMRFGEMAWIQRLHM 555

Query: 714 AVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  + D+  E+  +E L++        +    F+  AE   ++  ++
Sbjct: 556 AMDENRFCLYAQEIASIKDQGSEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 615

Query: 772 LFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            ++++ + + I   +       P     IN++   + D+   E ++        +P  I 
Sbjct: 616 RWVVQNVFKVIARCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVAPEMIC 675

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + + L +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 676 FEITETSAIADLDSAILFINELKALGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 735

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   +A P
Sbjct: 736 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQVESALQEMGVDFAQGYLIARP 791


>gi|288957026|ref|YP_003447367.1| GGDEF domain-containing protein [Azospirillum sp. B510]
 gi|288909334|dbj|BAI70823.1| GGDEF domain-containing protein [Azospirillum sp. B510]
          Length = 791

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 140/593 (23%), Positives = 249/593 (41%), Gaps = 35/593 (5%)

Query: 383 GFTVIQHVLAT-GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            F  +   +      +  +    ER +  +    + +   D         P   ++ G+ 
Sbjct: 192 EFGAMARAMEFCRRAAISLIERDERLAGIMNNVSEAILLVDGRGRIEEHNPAAVSLFGVT 251

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV------RAADNQFHWM 495
           +G + G   + L     + R+   ++L       R R+    R       RA        
Sbjct: 252 AGELRGRPLSGL--FAADGRERIESLLAELAA--RDRIPEPVREKALEIERAGGGGRIDA 307

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + + P+    G    ++    D+TE+ +    ++  A +D LTG+PNR      L   +
Sbjct: 308 SLSLSPLV-VRGR-RGFVCALTDVTERLRHERELMRLATRDRLTGLPNRAMIESLLEAAV 365

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           + S +       V+ +D+ ++K I D LG   GD +L  + RRI   ++  D++ R+  +
Sbjct: 366 ERSRSRR-RSFAVLCLDLSRFKLITDTLGHQAGDALLQEVARRIVASVRAADLVGRIGID 424

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-------- 667
            F IIL    ++ + A  A  +  +   P+ L   E  V  +IG A + +          
Sbjct: 425 DFAIILEEIRDADEAAAIAGRILDAFDNPVTLPGCEHYVRPAIGIAVYPTDSFVDDASDT 484

Query: 668 --ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLV 723
                  +L+ AE A+Y AK  GG     FR       R  +  D  L  A+   +  L 
Sbjct: 485 AMDDPQALLRAAETALYAAKRMGGRRHAFFRPELAEQARRQLALDGDLRAALALKQFRLH 544

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWG-----NISSSEFMLIAEELCMIKAINLFMLERI 778
           Y P + L+D  + G EAL++W+ P  G      I   EF+ +AEE   I  +  ++L+  
Sbjct: 545 YQPKVSLIDYSLEGFEALLRWEKPGEGPGQGLMIPPGEFIPVAEETGFIVPLGDWVLDEA 604

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R +  W D   M P+ + +NI+ K L +    E  + +I +    P  I+L  +E  VM
Sbjct: 605 CRQMREWLDA-GMEPVPVAVNISPKHLRNRS-AEDFRRIIDRHRLPPGLIELEITEGAVM 662

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
            + + +  +L  L+ +GI + +DDFGT  S LSYL  +P  T+K + S + G  +  +  
Sbjct: 663 QDIDHALAVLAALKAMGIRVAVDDFGTGHSSLSYLKRLPITTLKIDRSFINGVPNEREDA 722

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            I+ +II MA  +   ++A+ +        L    C  +Q      P+   + 
Sbjct: 723 GIVSTIIAMADMLGLHVVAEGVEKAEQANFLRHHNCTQVQGWLTGRPVPAEAA 775


>gi|307153190|ref|YP_003888574.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306983418|gb|ADN15299.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 589

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 223/457 (48%), Gaps = 17/457 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-----------TDDNLRPTVM 569
           E  K+ E +      D LTG+PN+ S  +    ++                       ++
Sbjct: 132 ELSKTKEQLNYLFHYDALTGLPNQWSLREIFNQMVSEVKSSLSGSEIPTPQTRQPLIPIL 191

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            + +D++++IN   G  +GD VL  + + +   L    +LARL+G+ F II+    +  K
Sbjct: 192 SLGLDRFRRINQNFGYDLGDSVLKLVAQFLNNCLGSRGVLARLTGDEFAIIIHPIEDEKK 251

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + + A  + ++ + P+ + ++EI ++ SIG   + +   +   +L+ A  AM  AK+ GG
Sbjct: 252 VFELAQELLQTCSQPLVINQQEIFLSLSIGIIFYPADGPSLEILLQKANAAMKRAKYLGG 311

Query: 690 NHVESFRVSSFRSD---RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           +  E +     +      + ++ DL  A+E +EL + Y P + L+  EIVG EALI+W H
Sbjct: 312 DRCEFYSQFLQKIPSTDYLELEADLRHALERNELDVYYQPRLSLVSGEIVGAEALIRWHH 371

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S + F+ IAEE  +I+ I  ++L    R    W++      I + +N++ +   
Sbjct: 372 PRRGLVSPAIFIPIAEETGLIEPIGEWVLRTACRQSKIWQEMGLGL-IRVAVNLSGRQFN 430

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              L + +  ++ +  ++   +++  +ES+++ N   S   L  L+ +G+ + +DDFGT 
Sbjct: 431 QLNLADWLANILQENDFNTPDLEIELTESILVENALESIQKLNDLKALGVKIAIDDFGTG 490

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   PFD +K +   +    +     AI ++II +A  +   ++A+ +  + ++
Sbjct: 491 YSSLSYLQQFPFDILKIDRCFVRNIDQNSKNAAITKAIIFLAHQLSLKVVAEGVETKTEL 550

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             L +  CD +Q    +  +  +    L+  +  L+ 
Sbjct: 551 AFLHQHQCDEMQGYLFSQAVKVSEFETLVSSKKNLLS 587


>gi|254459022|ref|ZP_05072445.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084293|gb|EDZ61582.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 829

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 226/459 (49%), Gaps = 8/459 (1%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G I        D  E  K    +   A  D LT IPNR  F++ L   +  +    
Sbjct: 371 KDELGAISSQFNNMAD--EIAKRETQLDELAHVDPLTKIPNRVMFIETLEKSISRAKRL- 427

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N +  V  +D+D +K +ND LG  VGD +L+ + + +  +++  D ++R+ G+ F I++ 
Sbjct: 428 NTKLAVFFLDLDDFKNVNDTLGHYVGDKLLIEIAKNLSIVMRESDTISRIGGDEFNILIE 487

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +   I + A    K + +P+ +    IT++ SIG + +      ++ +LKNA+LAMY
Sbjct: 488 DLESLSHIGEIAEKFIKQMTIPLYIENNAITISGSIGISIYPDDGEDTTTLLKNADLAMY 547

Query: 683 HAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    F      S   R+ + ++L  AV   E  L Y P   L+D  I   EA
Sbjct: 548 KAKDNGRNQYSFFSKELEVSLSKRINMLKELKEAVNRDEFRLYYQPKFSLIDGSIKSAEA 607

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+WD  ++G +S  +F+ ++E+   I  I  +++++   D  SW +        + +N+
Sbjct: 608 LIRWDSKEFGFVSPDDFIPLSEDSGEIVKIGAWVIKQACEDFASWSELGLGIT-QVSVNV 666

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++     +++ + +   I K+  SP  I++  +ES +  + ER+  +L  +RKIG+ L +
Sbjct: 667 SNVQFTRDDIVKVLSDNIIKSGISPESIEVEITESYMQEDSERALQILHDVRKIGVDLAV 726

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S +SYL  +P + +K + S +         + I R I+ +AK +   I A+ I
Sbjct: 727 DDFGTGYSSMSYLKRLPINRLKIDRSFIGDIPHDVDDVEITRIIVALAKTMGLAITAEGI 786

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                +  L  MG D  Q    + PL +   ++LLK++ 
Sbjct: 787 ETLEQMHFLQEMGVDEGQGYICSKPLPYEQFVELLKKKN 825


>gi|70733064|ref|YP_262837.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas fluorescens Pf-5]
 gi|68347363|gb|AAY94969.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas fluorescens Pf-5]
          Length = 707

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/565 (22%), Positives = 256/565 (45%), Gaps = 13/565 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++  A  + S  +       +  +  + + +   D         P ++ +L      + G
Sbjct: 135 RNRRALQHLSHDLEVARAFNASVLDNAAEGILVVDEGGCVRFANPAVSRLLNAQVKELEG 194

Query: 448 PI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               ++L   H+ D      +   +      RL  + ++R    Q   + +   P+ +  
Sbjct: 195 SPFLDYLQKPHVPDWSG-SELYACYRRGETYRLH-DAQMRTVPGQLISVALSCAPLPSDQ 252

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +    D++E +   + +   A  D LTG+ NR+ F   +  IL  S        
Sbjct: 253 ---KAMVVTLLDMSEVRHLHQQLEYQAVTDPLTGLLNRRGFYQTVENILLRSDRSGK-SL 308

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K++ND LG   GD VL  ++ ++ + L   DIL R+ G+ F  +L   + 
Sbjct: 309 VLLYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLKDCLHSFDILGRMGGDEFTALLE-LSF 367

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             + A  A  + + +++   +   E+ + ASIG A +         +L+ A++AMY AK 
Sbjct: 368 PEQAAKIAEKLIERLSINQQIDGLEVVLGASIGIAIYPDCGSNLDGLLRAADIAMYEAKR 427

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      +          R+M++E +  AVE  E  LVY P + + D  + G EAL++W
Sbjct: 428 AGRQQYRYYDHEMNGRARSRLMLEESVRSAVERKEFTLVYQPQVAIADGRLRGFEALLRW 487

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G++    F+ + EE  +I  +  ++ ++ A     W +Q   P + + +++++  
Sbjct: 488 RHPSVGDVPPGLFLPLLEEARLISRLGSWIYQQGAAQRKDW-EQVFSPDLVLGVSLSATQ 546

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L   ++ ++S+    P ++++  +E+ +  N + +R  L  LR++G+ + LDDFG
Sbjct: 547 FNMPNLVAELRQVLSRHGLQPRQLEVEVTEAALTQNLDDTRKQLQLLRQLGVRVALDDFG 606

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +    L+YL  +  DT+K +  L+     + +  AI R +I + K  +  +IA+ +    
Sbjct: 607 SGSCCLAYLRDLQLDTLKLDRHLIARLLTSPRDAAIARCVIDLCKQFDLLVIAEGVETLE 666

Query: 923 DIKELTRMGCDYIQDSHVASPLGFN 947
             + L   GC+Y+Q   VA PL  +
Sbjct: 667 QYQWLKANGCEYVQGFLVARPLTAS 691


>gi|289623724|ref|ZP_06456678.1| sensory box protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330866091|gb|EGH00800.1| sensory box protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 820

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 247/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 793


>gi|209522650|ref|ZP_03271208.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496699|gb|EDZ96996.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 845

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/430 (28%), Positives = 219/430 (50%), Gaps = 8/430 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+PNR  FLDR    +  S  + ++   V+ I++D ++ IND LG   GD +L+
Sbjct: 414 LHDSLTGLPNRSLFLDRTQQAIAKSQRNKSI-CGVLFINVDNFRLINDSLGDLAGDQLLI 472

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L  R+   +   D +ARL  + F I+L +  +       A  ++ ++  P  L   E+ 
Sbjct: 473 QLVERLKNSVLLGDTIARLGADEFAILLRNIKSVNNATIVAERIQTALLSPFILNGHEVF 532

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
            T SIG A   +++  + ++L+N   AM  AK       + F  +      DR+ ++ DL
Sbjct: 533 KTVSIGIALADTAETRAEDLLRNGNTAMLRAKSLKNIRYQVFERTMQVGGLDRLQLETDL 592

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            LAV   E  + Y P+I L   EIVG EAL++W HP+ G ++   F+ +A+E  +I  I 
Sbjct: 593 RLAVSRGEFVMYYQPVISLKTGEIVGFEALVRWQHPRQGLVTPERFLKVAKETGLIIPIG 652

Query: 772 LFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            + ++     +  W+        I + +N++ +  +  +L + ++ +I  +   PS ++L
Sbjct: 653 RWAMQEACHQLAIWQQSLKSNCQIIVGVNLSGRQFIHPDLVDEIKGIIQDSGIDPSGLRL 712

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV+M + E +  LL +L+ + I L++DDFGT  S L YL   P D +K + S +  
Sbjct: 713 EITESVIMDDVEATIRLLHQLKNLQIKLSIDDFGTGFSSLGYLPRFPVDVLKIDRSFIAH 772

Query: 891 STE----KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             E    + +AI+R+I+ +A+ +    IA+ +     +++L  +GC+Y Q  +   P+  
Sbjct: 773 IGEATEVENLAIVRTILMLAQALNLDAIAEGVETFEQLEQLRSLGCEYAQGYYFQRPISA 832

Query: 947 NSILKLLKER 956
           +   +     
Sbjct: 833 DHATQFFTSH 842


>gi|330976967|gb|EGH76987.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 664

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/615 (19%), Positives = 257/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 41  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 100

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 101 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDY-IIEPKVG 159

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +              ++  +R A      + +    +          +    D++ 
Sbjct: 160 HWLDSGFYQHYRKSDTYRVHDAILRTAQGTQLPVALSCAALPAEQ---KAMVLTVLDMSV 216

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     + ++L  +   D     V+ +D+D +K+IND
Sbjct: 217 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKY-LVVLFMDLDGFKQIND 275

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +    ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 276 SLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 335

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   EIT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 336 SGRRQVDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 395

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P I + D  + G EAL++W HP  G +  + F+ 
Sbjct: 396 RARSRLMLEESVRTAIDGRDFSVVYQPQIHVADGRLRGFEALLRWQHPAVGEVPPALFIP 455

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W      P + + + ++        L   ++  + 
Sbjct: 456 LLEETRLINRLGSWIFDQGAEQRQAWSHIFA-PDMVLSVCVSPTQFCLPNLASELKRAMD 514

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E+ ++ N   S   L  L ++G+ + LDDFGT    LS+L  +  D
Sbjct: 515 RFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLD 574

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +     +++  A+  SII +++N++  +IA+ +      + L   GC  IQ 
Sbjct: 575 TLKLDRRFVANIVGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVIQG 634

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 635 FLIAHPMVPEDALRF 649


>gi|149375318|ref|ZP_01893089.1| hypothetical protein MDG893_02570 [Marinobacter algicola DG893]
 gi|149360354|gb|EDM48807.1| hypothetical protein MDG893_02570 [Marinobacter algicola DG893]
          Length = 807

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/583 (20%), Positives = 226/583 (38%), Gaps = 13/583 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           V+  + +    +          + +    +        S   +   D     V       
Sbjct: 211 VVSALFLTLVALLSWFLGFRLVRLLNRTEQNFRSIFEQSAIGIIQIDTDGRIVNANQATC 270

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            ILG     +      +   +H  D D  R                E R+   DN F W 
Sbjct: 271 DILGYRPDDLVHRP--YRELVHPEDWDVAREERRGISFGTIDSYTTEHRIVRKDNDFLWA 328

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +  + ++      +  +  DI+E  +    +   A  D+LTG+ NR++F  +L + L
Sbjct: 329 RLTVSRVWDAPSSSAYFTTVMEDISESHRLSTELSYMATHDSLTGLINRRAFEQQLASHL 388

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                +   +  +  ID+D++K  ND  G   GD +L  ++  I   L+  DILARL G+
Sbjct: 389 GHV-RNGGKQHALCYIDLDQFKLANDTSGHDAGDQLLRQVSDIISRNLREADILARLGGD 447

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEML 674
            FGIIL +  +       A  +R S+     +  +   T++ SIG    T+     S ++
Sbjct: 448 EFGIILQNC-DLDTAHHVAEKVRASLDHLVFSWQQTSHTISCSIGVVPITAESAGISALM 506

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRL 730
           K A++A Y AK  G N V    +   +             +  A++++  +L    I   
Sbjct: 507 KAADIACYTAKDGGRNRVCVMSMDDKQMASQQGEMEWHNRIQTALQDNRFFLECQIIAPP 566

Query: 731 MD-EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               + +  E LI+        +  S F+  AE   M   I+ +++E I   + +  +  
Sbjct: 567 TGRGKGLRYEVLIRMRSQDGSVVPPSAFLPPAERYGMASRIDRWVIENILEKLSAAPEHL 626

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                   IN++ +     +  + +           ++I    +E+  + N    +  + 
Sbjct: 627 GALEA-CHINLSGRSFDQTDFADFVVGRFHHYGVPANKICFEITETAAVHNLLEVQAFMK 685

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           RL  +G S  LDDFG+  S   YL  +P   +K +G  +     ++  +A++R+I  + +
Sbjct: 686 RLSDMGCSFALDDFGSGLSSFGYLRRLPVTCLKIDGMFVRDIVTSKTDLAMVRAIHDIGR 745

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            ++   +A+ +  E     L  +G D +Q   V  P   + IL
Sbjct: 746 TMDMITVAEYVESEDAASLLKEIGVDLLQGFWVHRPSSLDDIL 788


>gi|74317283|ref|YP_315023.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056778|gb|AAZ97218.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 758

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 223/449 (49%), Gaps = 6/449 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + +++++   +   A+ D LT +PNR++F   L+  L         R  ++ +D+D+ K 
Sbjct: 302 VEQREQAQRHLNRLAYFDGLTRLPNREAFRLTLSQALRTLNGSGG-RLALLFVDVDRLKN 360

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L  +  R+  +L+  D L+R  G+ F +I+            A  + 
Sbjct: 361 VNDGLGHRAGDMLLQQIAGRLQSVLRGHDHLSRFGGDEFVVIVSEIVRDTDAERVAGRLL 420

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++A P+++   ++   ASIG A +     +   +LK+A+ AMY AK +GGN    +   
Sbjct: 421 AALAAPVDIGGTQVYTGASIGIALYPEDAESLDGLLKHADTAMYQAKEQGGNRYVFYHAQ 480

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ +   L  A+E +EL L Y PI+ L    IVG EAL++W+ P+ G +  S 
Sbjct: 481 QTERAVERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLVMPSA 540

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQ 815
           F+  AE+  +I A++ ++LE     + +W+ Q      + + +NI+++      L   + 
Sbjct: 541 FIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRAADDLTLSVNISTRQFEGEHLTRAVD 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++++   P  ++L  +E+V++   +  R  L  LR  G+ L LDDFGT  S LSYL  
Sbjct: 601 RALARSGLRPDCLELEITENVMLVMTDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQ 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +PF  +K + S +           I+ +I+ +A+ +   ++A+ I        L   GC+
Sbjct: 661 LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVVAEGIETAQQYAFLRDRGCE 720

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + Q + +++P   ++   LL  +    + 
Sbjct: 721 FGQGNLMSTPQAADAFASLLDRQKASGQR 749


>gi|330886287|gb|EGH20188.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 712

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/615 (19%), Positives = 254/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLSASVDQLRGTQVLDY-IIEPQVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D   +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 DWLESGFYKHYRKADTYRVHDAVLRTAQGTQLPVALSCAALPAEQ---KAMVMTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     +  +L       +    V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVEGMLLR-KEQTDKYLVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P + + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGKDFSVVYQPQVHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W        + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSRVFAA-DVVLSVCVSPTQFCMPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +ES ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITESSLVHNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +    E R   A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 623 TLKLDRRFVANIVESRREAAMASSIIDLSRNLDMLVIAEGVETPEQYQWLGDNGCQVMQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 683 FLIAHPMVPEDALRF 697


>gi|291536634|emb|CBL09746.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
 gi|291541027|emb|CBL14138.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 883

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/576 (20%), Positives = 234/576 (40%), Gaps = 33/576 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASG 443
            +IQ +L        + S        +   G  ++  D   +  + T        G    
Sbjct: 329 RIIQTILVKRIAKNSLASSYASLEAILENVGCGIYVMDTQENTILYTNQHFRKAFG---- 384

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                           D      I +      +      FR   +  +  W  +    ++
Sbjct: 385 ---------------EDV-RSAGIEECLRQGAQSEDSLYFREVYSKEENRWFDLHSTRIN 428

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  +  +    D+T++K   + I   A  D LTG+ NR      L   +  +     
Sbjct: 429 WVDGRKV-LLCTIYDVTDKKLYQQKIERQANNDFLTGLYNRMRCEQDLERYIRQTKEFGG 487

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ ID+D +K IND LG   GD +L +++  +  +    +   R+ G+ F IIL  
Sbjct: 488 -EGALLYIDLDDFKHINDGLGHQYGDVLLKNISGSLQRIPGVENNCYRMGGDEFIIILAH 546

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++   +      ++     P  L   +   T S+G   + +   T  E++K A++A+Y 
Sbjct: 547 -HHMAMLQQILDEIKALFTKPWMLKGTDYYCTMSMGVVRFPADGDTVEELIKKADIALYS 605

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVEN--SELYLVYHPIIRL--MDEEIVG 737
           AK  G N +E +  +       R+ +++++  A  N  SE  + + PI+ +        G
Sbjct: 606 AKCAGKNRIEFYDDNVESTSYKRLDLEKNMRNATRNAFSEFEVYFQPIVNITKEGNPCAG 665

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+  + G I  ++F+ +AE L +I  I  F+L         W D    P   + 
Sbjct: 666 AEALIRWNSGELGLIPPADFIPLAEYLGLINPIGEFVLREACIHCKYWNDM-GHPEYKVN 724

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   LL N++ E +  +I +T  +P  + L  +ES+ + +  R + +L  +R +G+ 
Sbjct: 725 VNLSVVQLLQNDIVERIARVIEETRITPQNLTLEVTESLAVNDMSRMKRILADIRHLGVR 784

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S L+++  +P D +K +   +    +     A ++ +  +A  I   +  
Sbjct: 785 VALDDFGTGYSSLNHIREMPIDVIKIDRCFIIDIGKDDFSNAFVKMVGELATAIHVNVCV 844

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  +  +  L       IQ  +   P+      +
Sbjct: 845 EGVETKEQLDALVGSKVQLIQGFYFGKPMKAEMFER 880


>gi|170751167|ref|YP_001757427.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657689|gb|ACB26744.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 785

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 141/796 (17%), Positives = 321/796 (40%), Gaps = 51/796 (6%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISI 234
           ++         +   ++  + I + +   +   +  +          +     V+  + +
Sbjct: 2   IYGAAGLAADHSRAFVFTALAICLVAGWLVAALMRTISEADLAQRYRWLAGTAVVAGLGV 61

Query: 235 DFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIA 294
                  ++      +L +   + I  +   I+ + + L   R        T +G A   
Sbjct: 62  WTTHFVAMLGYRPDMVLGFDDTTTIFSALVAILVVGLPLALARLFPSWRIRTLAGAAAGF 121

Query: 295 IL-----FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
            +       M+            + + +  +      +  G+        ++ A   + +
Sbjct: 122 GIGAMHHAGMAALEGCQQTHSPVMNVLAAGIGACSLALVCGLPRRLATPWVVCALFTLAV 181

Query: 350 WFI-------GLWMAITKR--LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
                        + I     L N+ I  +++      V+ +G  +           +  
Sbjct: 182 TGTHFVAIAGTTLVPIQGYRGLPNENIVLSILTTGGAAVLFLGAFLTILAARRFDAQERA 241

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHIN 459
            S       A+    + +   D              I  +     + G   + +      
Sbjct: 242 HSSI--LRTALDNMSNGLLYLDPAERVRLYNRRYLEIYHIPVDVDLTGMTIDQII----- 294

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-------HWMIIRIRPMSNSNGDILRY 512
           D   +R    +       R   ++R      Q          + + IRP+ +        
Sbjct: 295 DLVGYRHGWTAERREAARRRVDDWRSVKNSKQIDYPLEDGRVLQVEIRPIEDGGN----- 349

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +   +D+T+++++   I   AF D LT + NR++   RL                +++ID
Sbjct: 350 VVTFDDVTKEREAQRRIAELAFCDPLTKLANRRALSARLEHDF-----TPKRVVKLLLID 404

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K++ND  G  VGD +L+ +  R+  +      +ARL G+   +++    +  +   
Sbjct: 405 LDRFKQVNDTYGHVVGDQLLIQVANRLRTIAGPDGFVARLGGDEMAVLVYG--DQTQAMA 462

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A A+ +++A+P  + +  +++  SIG    T     + E+++ +++A+Y +K +G    
Sbjct: 463 VATAVIEALALPYGIDDLTVSIGCSIGLC-CTDDAQDAIELMQFSDIALYESKRQGRGRT 521

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +     R+  DRV ++ D+  A+E  E+YL + P+I L+D+ I+G EALI+WDHPK G
Sbjct: 522 SCYTPDMLRTVADRVQLETDMRAAIERGEMYLAFQPVIALVDDRIIGYEALIRWDHPKLG 581

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S + F+ +AEE   I  I  ++L+   R      +      +++ +N++       +L
Sbjct: 582 AVSPARFIPLAEETGQIIPIGAWVLQEACRQAARLPN-----DVYVAVNVSPVQFRSPQL 636

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   ++++     R+++  +E+ ++ +  R   +L  +R++G+++ +DDFGT  S L
Sbjct: 637 LSDLTQALARSGLPAERLEIELTETAIVEDGPRIAKILAAIRRLGVTVAMDDFGTGYSSL 696

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++L   P D +K + S +  +   R   A+L+ I+ +AK ++  + A+ +     +  + 
Sbjct: 697 AHLRDFPLDRIKVDRSFVATAETDRHSLAVLKGIMHIAKALDVVLQAEGVETPSQLALMR 756

Query: 929 RMGCDYIQDSHVASPL 944
            +GCD IQ   +  P 
Sbjct: 757 EIGCDAIQGYLIGRPQ 772


>gi|330900807|gb|EGH32226.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 664

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/582 (20%), Positives = 244/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D         P I
Sbjct: 74  VLKPKVQTLLEQQRNRRALQQLSLELESARAFNASVLANVAEGILVVDEAGTISFANPAI 133

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R A      
Sbjct: 134 CQLLNTSVDHLRGTQVLDY-IIEPKVGHWLDSGFYQHYRKSDTYRVHDAILRTAQGTQLP 192

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 193 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 249

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 250 LLRNERADKY-LVVLFMDLDGFKQINDSLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGG 308

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   EIT+ AS+G A++         +L
Sbjct: 309 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVDGVEITLGASVGIATFPDCGSNLDGLL 368

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 369 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGRDFSVVYQPQIHVAD 428

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W      P
Sbjct: 429 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSHIFA-P 487

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E+ ++ N   S   L  L 
Sbjct: 488 DMVLSVCVSPTQFCLPNLASELKRAMDRFELKPGQIEVEITETALVNNLTHSHKQLKLLH 547

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +     +++  A+  SII +++N++
Sbjct: 548 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVGSKREAAMASSIIDLSRNLD 607

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  IQ   +A P+     L+ 
Sbjct: 608 MLVIAEGVETAEQYQWLADNGCQVIQGFLIAHPMVPEDALRF 649


>gi|307152389|ref|YP_003887773.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
 gi|306982617|gb|ADN14498.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 724

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 113/578 (19%), Positives = 234/578 (40%), Gaps = 14/578 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +IQ +       + +F + E   + +   GD V   D   +     P    + G + 
Sbjct: 141 NVQLIQEIEERKRIEEALFIEKELAQVTLKSIGDAVITTDAQGNISYINPVAEALTGWSH 200

Query: 443 GSMHG-PIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIR 500
               G P+      ++              +   R   L     + A D + + +     
Sbjct: 201 QDAQGLPLFEVFYIVNEESNKPVENPATKALDEVRIVNLAKNTLLIARDGRQYPIDDSAA 260

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +S G ++  + +  DITE +     +   A  D+LTG+ NR  F  +L   +  +  
Sbjct: 261 PIQDSQGRVIGAVIVFRDITESRSLTRQLSWQASHDSLTGLINRLGFEQQLEAAIKSAK- 319

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           +++    +  +D+D++K +ND  G A GD++L  +T  + + ++  DILARL G+ F ++
Sbjct: 320 NEHQHHVLCYLDLDQFKVVNDTCGHAAGDELLREVTSLLQQRVRSSDILARLGGDEFAVL 379

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +            +       +   +  ++  SIG  +   +    + +L  A+ A
Sbjct: 380 LNQCSLEKATEIAETFRQLIDKFRFSWNNKSFSIGVSIGVVAIDYTSKDKNSVLSVADAA 439

Query: 681 MYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEI 735
            Y AK +G N V+ ++        +         +  A+E +   L Y  I  +    + 
Sbjct: 440 CYAAKGKGRNCVQVYQADDHELLRQRRERQWVVQINQALEENRFCLYYQKIAPINSLVKP 499

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           V  E L++  + +   +S   F+  AE   ++ AI+ +++    +    + +Q      F
Sbjct: 500 VYYEILLRLLNEQGNIVSPGIFIPAAERYGLMPAIDRWVISTFFQKYQQFYEQHLGKIDF 559

Query: 796 ----ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
                 IN++   + +    + ++   ++       I    +E+  + N +++  L+  L
Sbjct: 560 SQKLYGINLSGASINNEHFLDFLKEQFNQFNVPYHTICFEITETTAIANFQQAIHLINEL 619

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +K+G    +DDFG   +   YL   P D +K +GS +     +   IAI+ S   +   +
Sbjct: 620 KKLGCCFAIDDFGHGMNSFDYLKNFPVDYLKIDGSFVKNLVNSSIDIAIVESFNRIGHVM 679

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               IA+ +     ++++  +G DY Q   +A P  F 
Sbjct: 680 NLKTIAEFVENIAILEKVQAIGLDYAQGYEIARPSPFE 717


>gi|204927721|ref|ZP_03218922.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323063|gb|EDZ08259.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 663

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSQGKICRFNQSCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|116252831|ref|YP_768669.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257479|emb|CAK08575.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 551

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/530 (25%), Positives = 234/530 (44%), Gaps = 25/530 (4%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P +  +LG    +   P  ++  +    D+      L S      G      ++    
Sbjct: 32  FNP-VENLLGNELPASVKPAASFWEHFPELDKSAITLALRSL-----GDSAQPLQISGDL 85

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                  + I  +    GD+   +     I +++ +L   L  A  D LTG+PNR+ F +
Sbjct: 86  GAPGSHGLTIYRI----GDLFAVVRSEESIDDERATL---LHLATHDPLTGLPNRRQFSE 138

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L  +L       +   ++M +D+D +K +ND LG   GD +L     RI E L   D  
Sbjct: 139 DL-AVLLRETAGSDETLSLMQLDLDDFKPVNDTLGHPAGDKLLQLAASRIQECLTRDDRA 197

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            RL+G+ F +I     +  K    A A+  +   P  +    + V  SIG ++      T
Sbjct: 198 YRLAGDEFTVISRGPGHPAKGHQLAEALVDAFKKPFTIDGIALFVGTSIGISAAPPDGTT 257

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPI 727
             +++K +++A+Y AK  G      F  S              L +A+   + ++ Y PI
Sbjct: 258 PEQLMKASDVALYAAKKDGRGRARPFDPSMLELLEQRELLRRSLRMALVQQQFFIEYQPI 317

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  IVG EALI+W HP  G I  + F+ +AE   M+  I  ++LE+  R+ + W  
Sbjct: 318 --AEGGCIVGFEALIRWHHPLLGKIPPTAFIPMAEADGMMPEIGAWVLEQACREAMKWPQ 375

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   + +N+++ + L + L + +   +      P R++L  +ESV++     +   
Sbjct: 376 NYI-----VAVNLSAAEFLTSGLTDRVSQTLDLIGLPPDRLELEITESVLLERTVNNIDT 430

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           L  L  +GI ++LDDFGT+ S LSYL   PFDT+K +   +T         AI+R I+ +
Sbjct: 431 LNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLESDLKSQAIVRCIVNL 490

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A +++  + A+ +      + L  +GCD +Q   ++ PL   +I + +  
Sbjct: 491 AHDLDMQVTAEGVETPGQAEWLRSVGCDRLQGYLISRPLPVQAIGEFITR 540


>gi|320335783|ref|YP_004172494.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319757072|gb|ADV68829.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 813

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 211/440 (47%), Gaps = 11/440 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  +++ + +   A  D LTG+ NR  F   +   L            V+ ID+D++K I
Sbjct: 371 TALQEAQQHLAHRATHDALTGLANRAHFHAEVERALA---ERGESAIAVLFIDLDRFKHI 427

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VGD++L  + RR+   ++  D++AR+ G+ F ++L   ++       A  +  
Sbjct: 428 NDTLGHDVGDELLREVARRLRANVRAADLVARMGGDEFTLLLRDLHDERDAERVARKLLT 487

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++     L  + + VTASIG A      +  + + K+A++AMY AK  G N V +F  S 
Sbjct: 488 ALTGAFELRGQRLFVTASIGVALAPRDGLDVTTLQKHADIAMYRAKQSGKNGVRTFAASM 547

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               ++++ ++ DL  A+   EL L Y     +    + G EAL++W HP+ G +  ++F
Sbjct: 548 GEQETEQLDLERDLRAALHGDELRLHYQGQFDVATGTLNGFEALVRWQHPRLGLVPPAKF 607

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE   +I  +  ++L    R   +W    N     + +N+++      +    +   
Sbjct: 608 IPIAETTELIVPLGAWVLREACRQASAWGA--NERGFTVSVNVSAVQFDRPDFVTTVVHA 665

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +      + L  +ES+V+ +P+R+   + +LR +G+ + LDDFGT  S L+ L  +P
Sbjct: 666 LQDSRLRGECLILELTESLVLRDPDRAIAQIEQLRALGVRVALDDFGTGQSSLAVLRRLP 725

Query: 878 FDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            D +K + S M  +T +       ++  +I +A  +   + A+ +        L  +GCD
Sbjct: 726 LDFLKIDRSFMNAATPEERVDATLLVGVMITLAHGLNLHVTAEGVETGEQRDLLHTLGCD 785

Query: 934 YIQDSHVASPLGFNSILKLL 953
            +Q   +A P+       LL
Sbjct: 786 SVQGYLLARPVPPADAAALL 805


>gi|239835168|ref|ZP_04683495.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821307|gb|EEQ92877.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 657

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/453 (27%), Positives = 224/453 (49%), Gaps = 13/453 (2%)

Query: 505 SNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++G + R        T E +     +  +A  D LTG+PNR  F   L   L+ +A    
Sbjct: 197 AHGSMQRLTSDLRQATGELQSQNFRLEHDAHHDALTGLPNRVLFRQDLEKRLE-AAHAGG 255

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D +K +ND LG  VGD +L ++ RR+ +L    D++ RL G+ F ++   
Sbjct: 256 QSAVILLLDLDGFKDVNDTLGHDVGDALLQAVARRLTKLGGRGDMVCRLGGDEFALLSTG 315

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                +  + A  + ++I+ P ++ E EI +   +G A       T  E+ K+A+LA+Y 
Sbjct: 316 LQ-EDQALELADRLMEAISEPYHVGELEIKIGTCVGVAISQGEPDT-EELFKHADLALYE 373

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G  H   F         ++   + DL  A+EN E+ + Y P    +  EI G EAL
Sbjct: 374 AKALGPGHASVFESQMQTRLREKKSFEADLQKALENREMEVYYQPQACTVTREICGYEAL 433

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G++S  EF+ +AE++  I A+  ++L+    +   W       P+ I +N++
Sbjct: 434 LRWTHPVRGSVSPVEFIPVAEKIGFIHALGDWVLKTACLEAAHWNK-----PLKIAVNLS 488

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                   L + +   + ++     R++L  +ESV++   E++   L +L+ +GI + +D
Sbjct: 489 PVQFRSLNLIQSVIDALEQSGLGADRLELEITESVLLDKNEQTLSTLRQLKALGIQIAMD 548

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L   PFD +K + + ++  T     +AI+  +  + +++    IA+ I 
Sbjct: 549 DFGTGYSSLGSLSGFPFDKIKIDRTFVSDVTTRPDALAIVELVTGVGRSLRMVTIAEGIE 608

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            E   + L R+GCD +Q   +  P+  + +  L
Sbjct: 609 TEEQFECLKRLGCDQVQGYLIGKPMPASKLKHL 641


>gi|322433701|ref|YP_004215913.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321161428|gb|ADW67133.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 668

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 217/436 (49%), Gaps = 7/436 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++   E +L  A+ D LTG+ NR   + +L   L +  + +     +M ID+D++K++ND
Sbjct: 209 READQELLLYQAYHDALTGLGNRLQ-IQKLMGELLMPGSKEPRPFALMAIDLDRFKEVND 267

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD++L  +++R+   ++  D L R+ G+ F ++L    ++      A  M +S+
Sbjct: 268 TLGHQVGDELLRQVSQRLMAQIRKNDTLVRMGGDEFALVLDGCTSARVAESIAGRMVESL 327

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P +L +    + ASIG          ++++  +A+LA+Y  K+ G N    F  +   
Sbjct: 328 NKPFSLGDHTARIGASIGICLHLDEGQDATDLFHHADLALYKVKNSGRNSFMVFDENMRA 387

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               ++ ++  L  AV  ++++L Y PI+      ++G EAL++W+    G++S  +F+ 
Sbjct: 388 ETLHQMSMEHRLRSAVLENQMHLHYQPIVSTE-GRLLGFEALLRWNDAVHGDVSPVDFIP 446

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  +  ++L++       W    N   + + +N++S  L   +    +   + 
Sbjct: 447 LAEKTGLIIPLGAWVLQQACSQAAQWHRTGNKL-MKMSVNVSSIQLAHKDFVTTVLTALK 505

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T      + L  +ES ++   + S   L  LR+ G+ L++DDFGT  S LSYL  +P  
Sbjct: 506 ETGLPAELLDLELTESALIQQHDSSYESLHLLRRFGVKLSIDDFGTGYSSLSYLRDLPVH 565

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + + +     + +   ++  +I MA  +   ++A+ +     ++ L   GCD IQ 
Sbjct: 566 TLKIDRAFVKDIEISPESRTLVEGMIDMAHTLHLRVVAEGVENRKQMEILVEAGCDEIQG 625

Query: 938 SHVASPLGFNSILKLL 953
            H++  +  +   + +
Sbjct: 626 FHISKAVPADDARRFI 641


>gi|331009696|gb|EGH89752.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 712

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/615 (19%), Positives = 254/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLSASVDQLRGTQVLDY-IIEPQVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D   +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 DWLESGFYKHYRKADTYRVHDAVLRTAQGTQLPVALSCAALPAEQ---KAMVMTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     +  +L       +    V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVEGMLLR-KEQTDKYLVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P + + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGKDFSVVYQPQVHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W        + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSRVFAA-DVVLSVCVSPTQFCMPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +ES ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITESSLVHNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +    E R   A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 623 TLKLDRRFVANIVESRREAAMASSIIDLSRNLDMLVIAEGVETPEQYQWLGDNGCQVMQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 683 FLIAHPMVPEDALRF 697


>gi|207739166|ref|YP_002257559.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206592539|emb|CAQ59445.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 643

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 219/456 (48%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D++T +PNR +F +RL   L  +         ++++D+D +K +ND L
Sbjct: 170 QAEAHLDYLAHVDSVTELPNRHAFNERLQDALRRTGQTG--AIGLLLLDLDNFKVVNDTL 227

Query: 584 GIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILI--------SENNSLKIAD 632
           G + GD +L  + RR+ ++++      +L R+ G+ F +I          ++    +   
Sbjct: 228 GHSNGDRLLRQVARRLNDVIEQANARAVLCRIGGDEFAVIAELSQRASVGTDEAVEQSNA 287

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++A P  L   +I VTAS+G + +         + +NA+ AMY AK+RG N  
Sbjct: 288 LANRVLAALAAPFALDLHQIYVTASVGVSLYPHDAGDVQSLTRNADAAMYSAKNRGKNAA 347

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPII----------RLMDEEIVGLEA 740
             F     +  R  +  + DL  A+E+ EL LVY P I           +    + G+EA
Sbjct: 348 ACFTAEMDQQARRRLRVESDLRRALEHEELVLVYQPQIRLGALAADASHVCSAHVHGVEA 407

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   EF+ +AEE  +I  +  ++L    +    W  +     + + +N+
Sbjct: 408 LVRWRHPEIGLIGPGEFIAVAEETGLIVPLGRWVLRTACQQAAQWLREGRAT-LRVAVNL 466

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D  L E +  ++ +T   P  ++L  +ESV+M + + +  LL  L   G++L++
Sbjct: 467 SPRQTRDPALVENVLGILRETGLPPHLLELEITESVLMEDIDANIKLLEALHAAGVNLSI 526

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P   +K +   +        AI  ++I MA N+   ++A+ +  
Sbjct: 527 DDFGTGYSSLAYLQRFPIHKLKIDRGFVQRMPGDGEAIAGAVIAMAHNLRMQVVAEGVEH 586

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +  L   GCD  Q    + PL  + ++  L+ +
Sbjct: 587 AGQLAWLRAAGCDLGQGYLFSRPLYADQLMSWLRRQ 622


>gi|238757007|ref|ZP_04618195.1| phosphodiesterase [Yersinia aldovae ATCC 35236]
 gi|238704837|gb|EEP97366.1| phosphodiesterase [Yersinia aldovae ATCC 35236]
          Length = 864

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 215/440 (48%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++S + I   AF D+LTG+PNR  F       +  +    +    V+VI++D++K++N
Sbjct: 425 EREQSRKQIQHLAFYDSLTGLPNRNQFQVYAKQAIVQADERGHT-LAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L ++ +R+   +   D L RLSG+ F IIL       +       M   
Sbjct: 484 DSLGHAAGDELLAAIAQRLRNDVSKGDTLGRLSGDEFIIILAPST-MQQATLKVEKMLSL 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  + +  I  +AS+G + +  +      ++ +A++AM+ AK+ G  H   F     
Sbjct: 543 LSQPCQIADMNIIPSASVGISLYPENGSDLDTLMIHADIAMHKAKNMGYGHFNFFSAEMN 602

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++    +++ L  A     L L Y P + L D  + G+EAL +W HP  GNI    F+
Sbjct: 603 NLNQQRQDMEDALRNAFHIGSLELFYQPQVMLKDGHLYGVEALSRWVHPILGNILPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L+ +E   R +  WR +    P  I +N++  +  +  L E +  ++
Sbjct: 663 PLAEECGLINELALWAIETACRQLADWRLRGIEVP-SISVNLSPTNFHNPGLPEMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  + L  +E +++ N     + + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 QRNHLPPQDLTLEITEDILIENNAAIFVTIEKIHRMGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEHDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYQIGQ 841

Query: 937 DSHVASPLGFNSILKLLKER 956
               +  L    + + L+ R
Sbjct: 842 GFLFSEALPAIKLEQWLEHR 861



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 76/205 (37%), Gaps = 26/205 (12%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTI 467
           A+  S   + ++D+    +    +     G     + G     L + H N    + ++T+
Sbjct: 26  ALDSS-LAIIEFDLTSRIIDVNQNYLDYFGYQREDVIGQYH--LMFCHPNYAASEEYQTL 82

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---EQKK 524
            +  +      L+  F     D    W+    +P+   +G + R + IA DIT   EQ+K
Sbjct: 83  KECLLAGE--SLEGRFERLHKDGSTVWLAAIYQPVRGPDGSVNRMVKIAKDITLLIEQQK 140

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + +G +       LT +       DR  + + ++A   + +  V  I+   + ++    G
Sbjct: 141 ATQGWVEL-----LTQL------TDRSDSAMFIAANSVHGQQAV-YIN-QGFTQL---FG 184

Query: 585 IAVGDDVLVSLTRRIGELLKFPDIL 609
                 +  ++   +        +L
Sbjct: 185 YTPEQALGQNMVGLLQSAHPEQLVL 209



 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 26/106 (24%), Gaps = 17/106 (16%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G      L   H              V         + ++ 
Sbjct: 173 VYINQGFTQLFGYTPEQALGQNMVGLLQSAHPE----------QLVLNDSTSPNAQQQLL 222

Query: 487 ------AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + D Q HW    I  + +  G     IG+  DIT  K   
Sbjct: 223 PKELFYSKDKQPHWCSAVINSLVDKQGKSSYSIGVLTDITLTKMYE 268


>gi|325916725|ref|ZP_08178982.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325537074|gb|EGD08813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 789

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 222/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++ + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 351 EREQTRQRVHQLAFYDALTGLPNRIMFSARAEQALTQA-EYAAEPAALMFINIDRFKLIN 409

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G + GD +L  +  RIGE L    +LAR++G+ F + L    ++ +    A  +  S
Sbjct: 410 DSQGHSAGDGLLRDVALRIGEQLAATAMLARVAGDEFALALPQC-SAEQATAAAERLLGS 468

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 469 ISSPLPVGHMTVHPSASIGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 528

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G IS + F
Sbjct: 529 RMAQERVALEAELRQAIGRDQLQLHYQPQLHSAAPHALYGVEALLRWNHPQLGTISPARF 588

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R    +  WR++  +P   + +N+++       +   +  L
Sbjct: 589 LPVAEEQGMMPQLNAWVLRRACEQVADWRNR-GVPVTRVSVNLSASGFESPRMLPDLLRL 647

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+ T      + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 648 IADTGVQACDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 707

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 708 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 767

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 768 QGYLFSRPLPAPALEAWLSAQ 788



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + A+ GS   +   D+    +        + G     + G   + +     +D+     
Sbjct: 77  LAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGQRPSDVLTRAQSDQSEVSR 136

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I D     ++ R   +  V   D    W+ +   P+ ++  +   Y+ +  DIT+ K   
Sbjct: 137 IRDRADALQQTR--ADLLVYRKDGSPLWISLNFNPIYDARHNPSHYVAVLTDITDTKMHE 194


>gi|209542978|ref|YP_002275207.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530655|gb|ACI50592.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 142/747 (19%), Positives = 284/747 (38%), Gaps = 47/747 (6%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLV-NLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
           M     A AWV+ G           L  +L    + + R        +  +     +   
Sbjct: 38  MYFILVADAWVLAGTFIHRAPLWLTLYASLLLTAICLSRLVVWWKKRNVALTVETAFAEL 97

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            R +     +T    A    LF           +   +      ++            + 
Sbjct: 98  RRANRVAAALTVVFPAWAFALFSYGDALEQSHVAFFLVISILGTMFCLI---------HL 148

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
           R+  LI A +    + +              +    V G  ++V+LI       ++    
Sbjct: 149 RSAALIVAAVAGSAFVVFFASTGQPVFIGMAVNVVFVIGASVVVVLIQNRDFVRMVNASI 208

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTP-------DIATILGLASGSMHG 447
            ++       R    +      V   +    ++             I  +L + +  + G
Sbjct: 209 AARSKEQAQNRLLRMIDDMPVAVMTVEPDTLKINYVNETSKRLVRRIEHLLPIKADDLPG 268

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +     H   +        +     R  L  E            + +++  +++++G
Sbjct: 269 TCIDVFHR-HPQHQRRILGDPANLPHNARISLGPEV-----------IDLKVSAVTDTDG 316

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +  +     +T++ +S   I   A  D LTG+PNR +F + L   L         R  
Sbjct: 317 TYIGPMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEELDKRL----GTPGNRVG 372

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENN 626
           ++ +D+D +K +ND  G  +GD +L  +  R+      P  +  RL G+ F +++  +N 
Sbjct: 373 LLFVDLDGFKLVNDTRGHRIGDILLTQVASRLRATCNSPATVVGRLGGDEFAVLVPHDNA 432

Query: 627 SLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                  A      ++ P +L  +R I +TAS+G A           +L  A++A++ AK
Sbjct: 433 EEAALLAARV-VAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLLSRADIALHVAK 491

Query: 686 HRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALI 742
             G      F+       +  + ++  L   +++ E L++ Y PII +    +   EAL+
Sbjct: 492 TAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQPIIGIDSGTVTAREALV 551

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS  EF+ +AE+  +I  +  F+L    RD   W D        + +NI++
Sbjct: 552 RWYHPERGWISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTD-----GARVAVNISA 606

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             +    L   + A +  +   P R+++  +E+ ++ +   +   L +LR +G+ + LDD
Sbjct: 607 SQIGKGTLVPSILAALEASGLPPERLEIEVTETALLYDERDTTAELQQLRNLGVRVALDD 666

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L++L   PFD +K +GS +          A+++ +  + K +  T +A+ +  
Sbjct: 667 FGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTVAEGVET 726

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFN 947
           +  +  +   GC  +Q      P    
Sbjct: 727 QAHLDRVREEGCTEVQGYLFGRPKPDE 753


>gi|113970467|ref|YP_734260.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113885151|gb|ABI39203.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
          Length = 752

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 130/685 (18%), Positives = 264/685 (38%), Gaps = 34/685 (4%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +L   + + P               +       Y G +     +   P W L   + +  
Sbjct: 72  LLTGAAPHLPDSYNQAIHGVEIGPEVGSCGTAAYTGERVIVEDIEHHPYWALYQSFALAH 131

Query: 355 WMAITKRLDNDIIQPALVGGLVL------IVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
            +           Q  ++G   +             T+I         +       E Q 
Sbjct: 132 GLRACWSEPIKDSQGKVLGTFAMYYEEVKSPTTADLTLIAEAARLASLAIERSRSLEFQR 191

Query: 409 LAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHINDRDN 463
           LAV         +   +     +        ++     +        ++      ++   
Sbjct: 192 LAVKIFDRLPLSLVITNASHSVLYANDAFTQMV-YPETTDIDDFCPEHFFS---PSEPHE 247

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             ++       +    Q E      + +  ++ + +     S+ +   +  + +DI+E+K
Sbjct: 248 IDSLFQHLSEGK--MWQGELIGLRNNGETFYLDLTVTVFRESHSNENGFAWLFSDISERK 305

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ + I   A  D+LTG+ NR +   ++  ++   +       + M++D+D +K++ND  
Sbjct: 306 KAAQLIKYQANNDSLTGLANRNALFRQIQELISADSLTPG--FSFMLMDLDNFKQVNDTY 363

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV +   I   L    + +RL G+ F ++L       +++  A  + + +  
Sbjct: 364 GHDKGDALLVQVVEEIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKINRQVYR 423

Query: 644 PINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              L  ++ +  + SIG A +    +   ++L  A+ AMY +K  G N    F      +
Sbjct: 424 RYELSLDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQLN 483

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +   L  A+E     L + PI+      ++  E L++W H +   IS  EF+ I
Sbjct: 484 AERTANLHTLLKQALEQEAFELYFQPIVDATTGLVLRAEVLLRWQH-EGQFISPDEFIPI 542

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL----LDNELCEGMQA 816
           AE   +I  I  ++ + + + II  +      PI + +N+++ +     L +E C+    
Sbjct: 543 AENSGLIVNIGRYVRKAVMQTIIDMQALGW--PINLAVNVSTFEFWSHELQDEFCDSFAD 600

Query: 817 LISKTLY---SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +I +          I L  +ES++M        +L  LR  GI ++LDDFGT  S LSYL
Sbjct: 601 IIEELGLIEFPYELITLEITESLLMKQHVHLIKVLNELRGRGIKISLDDFGTGYSSLSYL 660

Query: 874 GYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K + S +    E     A++ +I+ ++  +  ++ A+ +  E  +K +    
Sbjct: 661 ANFPIDQIKIDKSFIDRLDEGERHLALVEAIVRLSHALNLSVTAEGVETEAQLKVMMENH 720

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
              IQ      P+   +  +LL E+
Sbjct: 721 IQEIQGYIFYKPMPKAAFFELLAEQ 745


>gi|293433647|ref|ZP_06662075.1| gmr [Escherichia coli B088]
 gi|291324466|gb|EFE63888.1| gmr [Escherichia coli B088]
          Length = 661

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKG--IKLRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|111221089|ref|YP_711883.1| putative sensory box/GGDEF family protein [Frankia alni ACN14a]
 gi|111148621|emb|CAJ60294.1| Putative sensory box/GGDEF family protein [Frankia alni ACN14a]
          Length = 814

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/653 (20%), Positives = 261/653 (39%), Gaps = 46/653 (7%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI-- 400
           A            +       +  +   +      +       + + +LA          
Sbjct: 110 ALAATIRVCGARLLPELGLDADGELTGRVAALQGALAHGYTRALRERILAGQDSIHRAAH 169

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +   R  +   G+   +   D     V        +L +A   +HG   +     H +D
Sbjct: 170 LATDARFQMIFNGAAIGIVLADAAGRIVDANDAFLQMLAVAPHRVHGRALHEFA--HPDD 227

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               R    +        L+ E R            +    +  ++G     + +  D+T
Sbjct: 228 AAGLRDAHAAQRLAGPAHLRTELRFAGPVGATVRAELTTTCLRQADGRGEIQLSMIVDVT 287

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +    +   A  D LTG+PNR    +R+T ++     + + R  +  ID+D +K +N
Sbjct: 288 ERHRLQGRLHRQARHDPLTGLPNRTVLAERVTELMA---AEPDRRLGLCFIDLDGFKAVN 344

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV++  R+   L    +L R+ G+ F ++L        +   A A+  +
Sbjct: 345 DSLGHDAGDRLLVAVAGRLTAALPPGQLLVRMGGDEFVVLLADTAGIDDVTATARAVLAA 404

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +A P+ + ++ +++ AS+G     ++    +++L+ A++ +Y AK  G      F    +
Sbjct: 405 LAEPVRVGDQSLSIGASMGLVERPAADGDLADLLRAADITLYQAKDAGRGRWAVFDAERN 464

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEI--------------------- 735
           + +  R  +   L  AVE  +  +VY PI+        +                     
Sbjct: 465 ARQVTRHTLSTMLPGAVERDQFIVVYQPIVTLGEQSGRVRAGWAGVAGGAGVAGGSGGSG 524

Query: 736 ------VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                 +G+EAL++W HP++G +    F+ +AEE   I  +   +LE   R    WR+  
Sbjct: 525 WAGGVMIGVEALVRWRHPRFGLLGPEAFIGLAEETGQIVPLGRRVLELACRQAARWRELR 584

Query: 790 NMPPI--FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                  F+ +N+ ++   + +L + +  ++ +T   P  ++L  +ES +MG        
Sbjct: 585 PDGAGAPFVSVNLTARQTHETDLVDQVGRILDETGLPPELLQLELTESALMGTAGEPARA 644

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM------TGSTEKRIAILRS 901
           L  L  +G+ + +DDFGT  S L+YL  +P  T+K  G  +       G       I+R 
Sbjct: 645 LDGLAAMGVRIAIDDFGTGYSNLAYLRRLPVHTLKLAGPFVDGFASARGHDPDGEKIVRM 704

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ +A ++  T+ A+ +      + L ++ CD  Q    A PL    I + L+
Sbjct: 705 LVELAHSLRLTVTAEGVETAAQAEGLGQVECDSAQGYLFAPPLPPGEITRWLR 757


>gi|158334441|ref|YP_001515613.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158304682|gb|ABW26299.1| diguanylate cyclase/phosphodiesterase with PAS domain
           [Acaryochloris marina MBIC11017]
          Length = 891

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 226/440 (51%), Gaps = 7/440 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ ++ + I   AF D+LTG+ +R  F   L   +  S  + + R  ++ ID+D +K 
Sbjct: 437 VMERDQAQKKIRELAFNDSLTGLASRAHFYQNLEVAIKRSDRNAS-RLGLLYIDLDNFKG 495

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L  +  R+  + +  D +ARLSG+ F I++   ++    +  A    
Sbjct: 496 VNDSLGHDAGDLLLREIGHRLQRVARDIDFVARLSGDEFCILVTDVDDDYAASTVAQRCL 555

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++  I L  R+ T   SIG A +       S ++K A+ ++Y AK RG N    ++  
Sbjct: 556 EEVSQSIELSARKFTPACSIGIAHYPDDGRELSTLIKAADTSLYAAKERGKNRYAFYQPQ 615

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  ++++L  AVE  +L LVY P + L    I+G+EAL +W HP+ G +  +E
Sbjct: 616 LTEQAEYRFRVEQNLREAVEKQQLSLVYQPQVELFSGNIIGVEALCRWHHPQLGEVLPTE 675

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE + M+K +  ++L+      ++W+     PPI + +NI+    LD      +Q 
Sbjct: 676 FIATAERIGMMKPLTEWVLKAACNQAVAWKRAGL-PPIRMAVNISPAQFLDKYFVSLIQY 734

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T   P+ +KL  +ESVV  + +++  +   L+ +G+ L +DDFG   S  + L ++
Sbjct: 735 VLEETGMVPTELKLEVTESVVQTD-QQNLSIFRELKDLGVLLAIDDFGKGYSSFASLKHL 793

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +   +       K   ++ ++I M  N++  IIA+ +      + L + GC+ 
Sbjct: 794 TVDCLKIDKYFIDDMLVDRKSQTLIAAMIDMGHNLDHEIIAEGVETVEQYQMLQQFGCET 853

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q   ++ P+  +SI K+LK
Sbjct: 854 AQGYLLSKPVSPDSISKILK 873



 Score =  146 bits (369), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 1/142 (0%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + +    ER  LA+ G+ D +WDW++  D V  +P   ++LG  +  +   +  W
Sbjct: 146 RRESEEKLQQSEERFLLAMRGANDGLWDWNLETDEVYYSPRWKSMLGYENDELAHDLSTW 205

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILR 511
              +H +D+     +++ ++  +      E R++       +++ R   +   ++G  +R
Sbjct: 206 ENLVHPDDKKKALALVEDYLDGKSDAFDVEMRMQHKAGHEIYVLSRAFLVHRATDGKAVR 265

Query: 512 YIGIANDITEQKKSLEGILCNA 533
            +G   DIT +KK+      NA
Sbjct: 266 LVGTHVDITARKKAEAFDDKNA 287



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 397 SQGIFSDGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
            + I  D E+        +    D+VW  +I    +         +G     + G     
Sbjct: 19  QEKIPKDLEKGIGFYKTIIRNLPDLVWLKNIDGVYLACNNRFEDFVGFPEQEIVGKT--- 75

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR------------AADNQFHWMIIRIR 500
                  D D     L         R   E  ++            A+D     + I   
Sbjct: 76  -------DHDLVDARLADLSR----RHDTEVILQGYPSVLEKWTTFASDGHSELLEISRV 124

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           P+ ++ G+++  +GI ++IT +++S E +  
Sbjct: 125 PIQDAQGELIGLLGIGHNITTRRESEEKLQQ 155


>gi|330972663|gb|EGH72729.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 664

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/615 (19%), Positives = 258/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 41  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 100

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 101 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDY-IIEPKVG 159

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +              ++  +R A      + +    +          +    D++ 
Sbjct: 160 HWLDSGFYQHYRKSDTYRVHDAILRTAQGTQLPVALSCAALPAEQ---KAMVLTVLDMSV 216

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     + ++L  +   D     V+ +D+D +K+IND
Sbjct: 217 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKY-LVVLFMDLDGFKQIND 275

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 276 TLGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 335

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   EIT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 336 SGRRQVDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 395

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P I + D  + G EAL++W HP  G +  + F+ 
Sbjct: 396 RARSRLMLEESVRTAIDGRDFSVVYQPQIHVADGRLRGFEALLRWQHPAVGEVPPALFIP 455

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W      P + + + ++        L   ++  + 
Sbjct: 456 LLEETRLINRLGSWIFDQGAEQRQAWSHIFA-PDMVLSVCVSPTQFCLPNLASELKRAMD 514

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E+ ++ N   S   L  L ++G+ + LDDFGT    LS+L  +  D
Sbjct: 515 RFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLD 574

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +     +++  A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 575 TLKLDRRFVANIAGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLADNGCQVMQG 634

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 635 FLIAHPMLPEDALRF 649


>gi|270159977|ref|ZP_06188633.1| sensory box protein/GGDEF domain/EAL domain protein [Legionella
           longbeachae D-4968]
 gi|289165279|ref|YP_003455417.1| regulatory protein (GGDEF, EAL and PAS domains) [Legionella
           longbeachae NSW150]
 gi|269988316|gb|EEZ94571.1| sensory box protein/GGDEF domain/EAL domain protein [Legionella
           longbeachae D-4968]
 gi|288858452|emb|CBJ12330.1| putative regulatory protein (GGDEF, EAL and PAS domains)
           [Legionella longbeachae NSW150]
          Length = 845

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/795 (18%), Positives = 323/795 (40%), Gaps = 36/795 (4%)

Query: 189 TLYRGIIIGVASLLAIFLTI---FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           T    +I G+  L  +F       ++   +        +       + ID  F     + 
Sbjct: 50  TALSFLIFGICLLFLLFHYYKICQFLNIIAVTFSILALLQSATGINLHIDELFFHHYYSS 109

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLH-WNRWHAKVGYITFSGIACIAILFCMSFYYP 304
            +         S ++     ++ L +     +     V  I    +  +++LF   ++  
Sbjct: 110 SNLFPGRMAPNSCVSFIIVGLVILIIGRDKLSFRMGVVASIFAIILFFMSLLFASGYFSS 169

Query: 305 MVTASIA--RITLASIVLYYTYFIIYHGMKGYE-----------RAVLLIPAWILIFIWF 351
           +  A        +A         +    +                A+ LI    +  I  
Sbjct: 170 LERAYQWSQFTPMALNTAIGFILLSLTLLFSLLYRCQYHGISVWPAMPLIIGQGMFLINS 229

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA- 410
             L +++ ++   + +   L   + ++  +                Q    + + ++L  
Sbjct: 230 -MLALSVHEQEYINHVPSLLPLVIFILGTIFTLMFSSLFYYVQLERQRSKEEKKLRALTE 288

Query: 411 --VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN--DRDNFR 465
             +  + D +  W+              +  + +  +    I + L  +     +++NFR
Sbjct: 289 ATLDATNDGILAWNRRGIITHCNSKFTELWEVPAKDVKNYSIFDLLVNMSEKAKNKENFR 348

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            ++D  +     R +    ++       ++   ++   +    +++ +   +D+T  K  
Sbjct: 349 ELMDILIQPSESRKRITLELKGP----RFLEASMQTSKSKELPLIQVL-SFHDMTVVKNL 403

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              ++     D +TG+PN+ S  D L T++     D++ +  V ++DID++K++NDV G 
Sbjct: 404 ENQMIHRNKHDLITGLPNKSSIFDILDTVIKDLVNDNH-KFGVFIVDIDRFKQVNDVFGH 462

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD +L  +  R+ + +K    L  L G++F  IL S N+ +       A+  ++    
Sbjct: 463 SKGDQLLCMIAERLNDAVKNLGTLCSLGGDQFV-ILSSLNHHVSAKKIIKAVLCALKPAF 521

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                 +T++ +IG A      I + E+L+ A++AM  AK +G N    +          
Sbjct: 522 EFDHSYLTLSCAIGVAICPQDGIKADELLRCADIAMIRAKEQGRNSFAYYTKKLSEYTYE 581

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + +L +A+EN E  L + P++ L  ++++GLEAL++W +P+ G +S   F+  A +
Sbjct: 582 RMLVENELYMALENEEFKLFFQPLVELKTQKVIGLEALLRWQNPRLGLLSPDNFLPYAHD 641

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L ++  I  ++L      +  WR Q +   I I IN+ ++     +L   +   +     
Sbjct: 642 LGLLTKIGTWVLNEACSQLNIWRQQGHHL-IKISINVTAQQFKHAQLLHDINKALDHYAL 700

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             S +++  +E  ++   E     L  LRK  I++ LDDFG   S L+ +   P D +K 
Sbjct: 701 PGSCLEMELTEQTLIQGSEEVISTLRELRKKKITIALDDFGKGYSNLNRIKNFPLDKLKI 760

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++    +E    ++++II +A+ +  +++A+ I  +  +  L    CDY Q   +A
Sbjct: 761 DQSFISNLMYSENNKNLIKAIIYLAQTLNLSVLAEGIENQDQLNFLIANKCDYGQGFLLA 820

Query: 942 SPLGFNSILKLLKER 956
            P+  +  L  LK  
Sbjct: 821 KPMPSSDTLHFLKNY 835


>gi|332091682|gb|EGI96762.1| protein gmr [Shigella boydii 5216-82]
          Length = 652

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/560 (21%), Positives = 245/560 (43%), Gaps = 16/560 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +   +   D   +            GL    + G   +                
Sbjct: 105 EQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SVFKLFMSRREAAASRR 162

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +          + E  +     Q  ++       S S  + +  I    DITE++++ E
Sbjct: 163 NNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQE 222

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D+D +KK+ND  G   
Sbjct: 223 RLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLDLDNFKKVNDAYGHLF 279

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +   A  +   + +P  +
Sbjct: 280 GDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEAMASRILTRLRLPFRI 338

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
              E+  + S+G +        S+ ++++A+ AMY AK  G      F   ++    + +
Sbjct: 339 GLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYL 398

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G I   +F+  AEE  
Sbjct: 399 WLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLDFISYAEESG 457

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  +++  + R +  WRD+     + + +NI+++ L D  +   ++ ++ +  +  
Sbjct: 458 LIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTIFTALKQVLQELNFEY 515

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S LS L   P D +K + 
Sbjct: 516 CPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQ 575

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +          +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P
Sbjct: 576 VFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKP 635

Query: 944 LGFNSILKLLKERFPLVKNT 963
           +   +  +  K     +K T
Sbjct: 636 MPAVAFERWYKRY---LKRT 652


>gi|194288798|ref|YP_002004705.1| sensor protein [Cupriavidus taiwanensis LMG 19424]
 gi|193222633|emb|CAQ68636.1| putative diguanylate cyclase with Mase1 and PAS domains [Cupriavidus
            taiwanensis LMG 19424]
          Length = 1127

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/580 (20%), Positives = 229/580 (39%), Gaps = 17/580 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
                 ++ +F + ER  + +   GD V   D         P    + G    +  G P+ 
Sbjct: 547  EQRRLTEALFEEKERLHITLRSIGDAVICTDATMHVTFMNPIAEQLTGWTMAAATGLPLE 606

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +  +  +   + +++ +         E   +++   + H +     P+  + G++
Sbjct: 607  RVFRIVDESTGEPIPSPVEACLRTLTPAYLQEGAVLQSLTGERHDVQDSAAPVLTARGEV 666

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            L  + +  DIT  +     +  +A  D LTG+PNR  F  RL    D +    + R  + 
Sbjct: 667  LGAVLVFQDITAARALQRELARSAMHDALTGLPNRTWFEKRLRESCDAARLHGH-RAALC 725

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             ID+D++K +ND  G   GD +L  L   I   ++  D+LARL G+ F ++L        
Sbjct: 726  FIDLDRFKIVNDTAGHGAGDVLLRELGYLIRNHVRPDDVLARLGGDEFALLLKDCTVDQA 785

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                   +            R   V ASIG A+        SE++  A++A Y AK  G 
Sbjct: 786  EQVCQGVIDAIRGRRFPWEGRVYDVGASIGIAAIDLDVPPVSELMSRADVACYAAKAAGR 845

Query: 690  NHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYH------PIIRLMDEEIVGLE 739
            + V  +R            + +   +  A+E +   L         P           +E
Sbjct: 846  SRVSVYRRDESDARRHHRELEVAAGIHSALEANRFRLFAQEIRALQPEQNEDGSGHRHIE 905

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             L++        I    F+  AE   ++  ++ +++  + R             + + IN
Sbjct: 906  ILVRMVDEHGELILPGAFIPAAERYDLMGHVDRWVIRNVLRGYGERLRAVPG--LSVSIN 963

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +++  L +  L   + A +  +     RI+L  +E+ ++ N   +  L+  +R+ G +++
Sbjct: 964  LSANSLGEPFLLPFLHAELEASALPAHRIRLEITETALINNMAAANRLVAEMRRAGCTVS 1023

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
            LDDFG+  S  +YL   P D +K +GS +    +      I+ SI  +   +    +A+ 
Sbjct: 1024 LDDFGSGLSSFAYLKQFPVDFLKIDGSFIRQLADNAVDREIVSSINDIGHRLGVRTVAEW 1083

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +  E  +  L  +G DY Q   +  P+  +  L    +R 
Sbjct: 1084 VEDERTLDALRAIGVDYAQGYAIGRPVALDVFLAGCAQRN 1123



 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 93/293 (31%), Gaps = 25/293 (8%)

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF-CMSFYY 303
                   W+A +        ++     +      A+      +G   +++    ++ + 
Sbjct: 164 FAPVWWTWWQASALGMALLLPMMLSTTAVRVRAAVARPMLAPQAGALALSLAIGALAQWQ 223

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
                +   + L  + L    F                    L+    +   M ++ R +
Sbjct: 224 GHDPFAAMSLPLVLLALAGNPFATALL--------------ALVATLCLQALMLLSHRHE 269

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +  A       +++++   +        +    + S  +R   A+  S   +   D+
Sbjct: 270 AVPLSAA-------VIMVLPVCIAYLTEQNRHGRASLRSSDKRFRQAMEHSAIGMALVDM 322

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                T    +  +LG ++  +     ++    H +D       + + +  +    + E 
Sbjct: 323 DGRWQTVNRAMTELLGYSAAEL--RELSYQQLTHPDDLTGDLRQVANLLSGKVEAYRLEK 380

Query: 484 RVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R R  D  + W+++ +  + +   G+   +I    DI  +K + + +   + +
Sbjct: 381 RYRHKDGHYRWVLLAVSLVRDEQTGEPQHFITQVEDIHARKLAQQELERLSRR 433



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 1/144 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T ++ + A     Q +     R  LAV   G  +W+WD+    +T    +  + G    
Sbjct: 411 ITQVEDIHARKLAQQELERLSRRIQLAVEAGGVGIWEWDLAGAGITWDARMHALHGTDPA 470

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +       W+  +H +D    R  +   +         E+R+     +   +        
Sbjct: 471 AGAPLPEQWIALLHPDDVSRVRGEMRLAIRGD-APFDTEYRIVRPGGEVRHVRAMAMATR 529

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
            ++G     +G   D TEQ++  E
Sbjct: 530 GADGTAQALVGTNWDTTEQRRLTE 553


>gi|320540133|ref|ZP_08039788.1| putative modulator of Rnase II stability [Serratia symbiotica str.
           Tucson]
 gi|320029799|gb|EFW11823.1| putative modulator of Rnase II stability [Serratia symbiotica str.
           Tucson]
          Length = 664

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/583 (20%), Positives = 253/583 (43%), Gaps = 12/583 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                    T   ++ +          V  +  ++   D                GL   
Sbjct: 89  AGTASAFSDTKSVARDLVHGLSFAEQVVSEANSVIVIVDQHGRIQRFNRLSEEYTGLREQ 148

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G    +  ++   +    +  +  F        + E  ++    +  ++       S
Sbjct: 149 DVIGKSI-FQLFMSREEAKASKRNIAGFFRN-GFSYEVERWLKTVKGERLFLFRNKFVHS 206

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            S  + +  I    DITE++++ E +   A  D +T +PNR +  +++T ++       +
Sbjct: 207 GSGKNEMFLICSGTDITEERRAQERLRVLANTDIITSLPNRNAIQEKITQVIATRK---D 263

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D +KK+ND  G   GD +LV ++  I + LK   +LARL G+ F ++L  
Sbjct: 264 SHVGLVYLDLDNFKKVNDAYGHMFGDRLLVEVSLAILDCLKQDQVLARLGGDEF-LVLAQ 322

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           + +   + + A  + + +  P  +   E+  + SIG A           ++++A+ AMY 
Sbjct: 323 QADHDMLQNLARRIIERLKKPFRIDLIEVYTSCSIGIALCPEHGNDLDSLIRSADTAMYV 382

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F   ++   ++ + +  +L   +E ++L + Y P +     E+  +EAL
Sbjct: 383 AKDHGKRSFAVFSSEMNKRVAEYMWLDTNLRKGLEQNQLVVYYQPKVDTRSGEVRSVEAL 442

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+ P+ G +   +F+  AEE  +I  +  ++L+  A+    W        + + IN++
Sbjct: 443 VRWNSPERGLVPPLQFISYAEESGLIIPLGQWVLQTAAKQAAKWH--LKGLNLRVAINLS 500

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ L D+ +   +  ++     +P  +    +ES +M +  R+  L+ RLR++G  + LD
Sbjct: 501 ARQLADDGIVNSLIDVLQHNRMTPCLLDFELTESSLMEDETRACTLIARLRELGAQVQLD 560

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+ L  IP D +K + S + G        +++R+I+  A+ ++  +IA+ + 
Sbjct: 561 DFGTGYSSLAQLARIPLDAIKLDKSFVHGVNCNPVSQSLVRAIVAAAEALKFRVIAEGVE 620

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            E +   L  +G D  Q    A P+    +   L+        
Sbjct: 621 TESENHFLDEVGVDEKQGFFFAQPMPPKQLDHWLQSYRSSSST 663


>gi|289624128|ref|ZP_06457082.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330865826|gb|EGH00535.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 712

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/615 (19%), Positives = 253/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GS-----------GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SAQAFNASVLANVAEGILVVDEAGTISFANPAICQLLSASVDQLRGTQVLDY-IIEPQVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D   +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 DWLESGFYKHYRKADTYRVHDAVLRTAQGTQLPVALSCAALPAEQ---KAMVMTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     +  +L       +    V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVEGMLLR-KEQTDKYLVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P + + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGKDFSVVYQPQVHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W        + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSRVFAA-DVVLSVCVSPTQFCMPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E  ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITEGSLVHNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +    E R   A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 623 TLKLDRRFVANIVESRREAAMASSIIDLSRNLDMLVIAEGVETPEQYQWLADNGCQVMQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 683 FLIAHPMVPEDALRF 697


>gi|322614960|gb|EFY11885.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619400|gb|EFY16280.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623212|gb|EFY20054.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628502|gb|EFY25290.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322638526|gb|EFY35221.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322645332|gb|EFY41860.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651785|gb|EFY48157.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654318|gb|EFY50640.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659284|gb|EFY55532.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662715|gb|EFY58922.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667674|gb|EFY63834.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671912|gb|EFY68033.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677042|gb|EFY73106.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680296|gb|EFY76335.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685275|gb|EFY81271.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323196175|gb|EFZ81334.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199334|gb|EFZ84428.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204792|gb|EFZ89788.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205912|gb|EFZ90875.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323217239|gb|EGA01960.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220168|gb|EGA04631.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225578|gb|EGA09806.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232101|gb|EGA16208.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234628|gb|EGA18715.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238080|gb|EGA22139.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243317|gb|EGA27336.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248427|gb|EGA32362.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252533|gb|EGA36376.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255442|gb|EGA39208.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260844|gb|EGA44446.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267569|gb|EGA51052.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271001|gb|EGA54432.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 660

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSQGKICRFNQSCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|288573439|ref|ZP_06391796.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569180|gb|EFC90737.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 566

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 255/556 (45%), Gaps = 13/556 (2%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
               + V   D     +      + I G  +    G     L   H +D   F   +   
Sbjct: 18  DEITEGVTLTDSSGTILAVNRAFSAITGYEASEAMGRNPRILKSQHHDD--FFYRNMWLS 75

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +    GR + E   R  D + +   + I+ +  S+G I  Y+ + +D++  K   EG   
Sbjct: 76  IKGE-GRWEGEIWNRRKDGEIYPEWLSIKRLPGSDGSI-YYMAVFSDLSRMKSMKEGKSF 133

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +  +D LTG+ +R   ++RL+  L       +    ++V++++++K +ND  G  VGD V
Sbjct: 134 HGAKDALTGLSDRFVLMERLSASLARGER-QSESVGLIVLNLNRFKDVNDGFGYLVGDKV 192

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +  R   ++K  +++AR+  + F  ++     S +I     ++ +  + PI++ E E
Sbjct: 193 LRHIGDRFRSIVKDHEMVARVGSDEFAFVIPQNGKSDRIRTVLRSICEVFSSPISISEAE 252

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIK 708
           + ++ S+G + +        EM++NA LAM+  K     GG  + +  +      RV ++
Sbjct: 253 LNISVSVGVSVFPDDAANGDEMIRNAGLAMHRVKREALLGGYALYNDEMDRDARRRVALE 312

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +++ LA+E  E +L Y P + +   EIVG+EAL++W  P    +S  EF+ +AEE  ++ 
Sbjct: 313 QEMRLAMERGEFFLQYQPQVLMGGSEIVGVEALVRWRKPDGEVVSPGEFIPLAEETGIMI 372

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++LE   R  + W        + + +N++   +  ++L E + + + +T +   R+
Sbjct: 373 PLGRWILEEACRQGVLWNRAGFE--LKMSVNVSPVQIYGDDLYETVASALEETGFPAERL 430

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E+           L  R++ +G+ + +DDFGT  +   ++   PF  +K + S +
Sbjct: 431 TLEITENTFRDEKGLLLELFDRIKALGVKVAIDDFGTGYASFDFIRNFPFYGIKIDRSFV 490

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY-IQDSHVASPLG 945
                + +  A+  S+I MA+N+   ++ + +  +  +  +     D  IQ    + PL 
Sbjct: 491 LDLERSPRSAAVANSVIAMARNMARAVVVEGVETKSQLFHIGGEKADLIIQGFVYSRPLN 550

Query: 946 FNSILKLLKERFPLVK 961
              +   ++   P V 
Sbjct: 551 PEKLPDFVESLRPPVS 566


>gi|300703832|ref|YP_003745434.1| diguanylate cyclase/c-di-gmp phosphodiesterase [Ralstonia
           solanacearum CFBP2957]
 gi|299071495|emb|CBJ42817.1| putative diguanylate cyclase(GGDEF domain) and c-di-GMP
           phosphodiesterase (EAL domain) [Ralstonia solanacearum
           CFBP2957]
          Length = 776

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/686 (18%), Positives = 272/686 (39%), Gaps = 40/686 (5%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           R   +   +               F++             +I +    F + H       
Sbjct: 95  RALKRTNRLASIMAVSFTAWSLALFHHGDPYTRSYLAFYMAITVIACIFCLMHLRSAAIT 154

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
             +++    + F    G    I   ++  ++   L     L+++++ +     ++     
Sbjct: 155 VTVIVNGAFIAFFASTGQPTFIAIAINMALVSVGL-----LVILMVNYRDFTAMVNAQTE 209

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTT-------PDIATILGLASGSMHGP 448
           ++    +  R    +      V   +     +             IA +L + + ++ G 
Sbjct: 210 ARRREEEQGRLLHMIDDMPVAVMTVEPDTFAINYVNNTSRRLIDRIAHLLPIDADTLLGT 269

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +   + H   +        +     R RL  E            + +++  +  ++G 
Sbjct: 270 SIDVF-HTHPEHQRRLLADPANLPHNARIRLGPEV-----------LDLKVSAVRANDGS 317

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +  +     +T++ ++   I   A  D LTG+ NR +F ++L   L+        R  +
Sbjct: 318 YIGPMLTWALVTKEVEAEHRIRQLAHYDTLTGLANRTNFREQLDARLEA----PGARLGL 373

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGIILISENNS 627
           + ID+D +K +ND  G   GD +L  + +R+          +ARL G+ F +++  ++  
Sbjct: 374 LYIDLDGFKLVNDTKGHRAGDALLERVAQRLRTVCDCPGVAIARLGGDEFAVLVPHDDAE 433

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              A  A  +    A      +  + + ASIG A   +    +  +L  A++A+Y AK  
Sbjct: 434 RAAALAAELIEALGAPAPLGADPSVRIGASIGIALAPAHGRDTENLLARADIALYAAKAA 493

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQW 744
           G      F   + +    R  ++  L +A+++   L++ Y PI+ +   +I   EAL++W
Sbjct: 494 GKGLARLFCAEMETRIQARARLEAQLRMALDHQDRLFVFYQPIVDVETGKITAREALVRW 553

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            H + G +   EF+ IAE+  +I  +  F+L R  R+   W D        + +N++   
Sbjct: 554 HHAERGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWTD-----GARVAVNVSPMQ 608

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    L + ++A +  +  +P R+++  +E+ ++ N   S   L +L  +G+ + LDDFG
Sbjct: 609 LGKTTLAQTVRAALVDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYNMGVRVALDDFG 668

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L++L   PFD +K + S +           ++++I  + + +  T +A+ +    
Sbjct: 669 TGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVKTIADLGRQLGVTTVAEGVETPA 728

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNS 948
            ++ +   GC   Q      P   + 
Sbjct: 729 HVRRIREAGCTEAQGYFYGRPAPSDE 754


>gi|86358628|ref|YP_470520.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86282730|gb|ABC91793.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 783

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/799 (19%), Positives = 302/799 (37%), Gaps = 34/799 (4%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
              +    + GI+ G   +    L + ++   S            VL  ++        L
Sbjct: 1   MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVL-LVANAQALAKPL 59

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            +L    +    A      +   +         +   + +       +  ++     +  
Sbjct: 60  WDLDEESVTQISATVVSQGAIVKVEVRDQSGQLDVSQSTIPRSFDGKLVQVSRAIIYNTI 119

Query: 303 Y-PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
             P    SI+    A  +           +  +  AVL +       I      +    R
Sbjct: 120 DGPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLTVFGTA--LIGNRFFVIQPLMR 177

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI---- 417
           L   I     +G    +       + +   +       + S+ +   LA   + DI    
Sbjct: 178 LTAAIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKLAHRRATDIYNLT 237

Query: 418 ---VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              ++  D        +       G    ++ G  RN+   +  N RD F          
Sbjct: 238 PAMLFSLDEEDRITAVSDYWLLATGYDRAAVIG--RNFADLVTANTRDKFVK-----RRR 290

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +    +    D +   ++I +   + ++      + +  D+TE K S +     A 
Sbjct: 291 AESGMAVTVKFICLDGRTMDVLI-MESEAGADAHDRLSLSVMTDVTELKASEDRNHRQAI 349

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+ NRQ F   L   +  +          + +D+D++K IND +G A GD  L+ 
Sbjct: 350 TDHLTGLLNRQGFEAVLDNKIAAADAAGQ-ELACLFVDLDRFKWINDNMGHAAGDRALIE 408

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L  R+   L   D  ARL G+ F I+L +++   +       +      P       + +
Sbjct: 409 LVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKAMCEQIASIFETPFAPD---MHL 465

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
           +ASIG + +     T++E+L+ +++AMY  K  G N  + F  +       R  I+ ++ 
Sbjct: 466 SASIGISIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDKAMLDRARSRAEIEANIE 525

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             +  S       PI+ L    I G EAL++ +HP+ G +  +E + +AEE   I  +  
Sbjct: 526 AGLAESWFEAFVQPIVNLNGRGIAGFEALMRLNHPQKGLMPPAEIISVAEETGKIVRVGN 585

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++E+   ++      + M   ++ IN +        L   + A++ +    P RI +  
Sbjct: 586 VIMEKAISNLAKISRISGMQDTYLAINFSPLQFE-PALPARLAAIVGRHGIRPERIVVEI 644

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+V+M +  + R+++  LR+ G  + LDDFGT  S LSYL   P D +K + S      
Sbjct: 645 TEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAIN 704

Query: 893 -------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                  +K   ++  I  ++  +  T+IA+ I  E + + L +MG DY Q      P  
Sbjct: 705 DGDDDVRQKSRMLIEGITTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPQH 764

Query: 946 FNSI-LKLLKERFPLVKNT 963
             ++  +L+  +  + + +
Sbjct: 765 AAALIEELMAPQSSVARAS 783


>gi|13473684|ref|NP_105252.1| hypothetical protein mll4364 [Mesorhizobium loti MAFF303099]
 gi|14024435|dbj|BAB51038.1| mll4364 [Mesorhizobium loti MAFF303099]
          Length = 738

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 215/444 (48%), Gaps = 10/444 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             +     D   + +S E +   A  D+LTG+ NR SF DRL   ++ +    +    V+
Sbjct: 277 TGFASYLIDERGRLESFERLQHLALNDSLTGLANRVSFNDRLDHEIERAREHQDTMTAVI 336

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           VID+D++K+IND+ G A GD  L  + RR+ +L    + +ARL G+ F  I     +   
Sbjct: 337 VIDLDRFKEINDLRGHAAGDQALKIIARRLAKLTGDGEFVARLGGDEFAAI-KRFKDQND 395

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      + KS+  P+ + + E    ASIG A +         ++ NA+LAMY AK+   
Sbjct: 396 LLGLVSRLEKSLFEPLRIDDFETVTGASIGVAVYPRDGADRERLVSNADLAMYRAKNDVT 455

Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             V  +   +      R  +  DL  A++  EL L Y     +      G EAL++W HP
Sbjct: 456 RAVCFYESAMDETARARRALATDLRQAIDRGELSLHYQVQTSVQTGATCGYEALLRWTHP 515

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I  +EF+ IAEE   I AI  ++L    R   SW          I +N++      
Sbjct: 516 VHGMIPPAEFIPIAEENGSILAIGEWVLRTACRQAASW-----DNGHKIAVNLSPVQFAH 570

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L   +  ++ +T  SP R++L  +ES ++ +  R+  +L +++ +G+++ +DDFGT  
Sbjct: 571 ADLATLVHQILVETGLSPKRLELELTESTIVADKVRTLHVLRQIKALGVTIAIDDFGTGY 630

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L   PFD +K + S M     + +  AI+R+++ + ++++  ++A+ +   + + 
Sbjct: 631 SSLDTLRSFPFDKIKLDRSFMADVERSPQAKAIIRAVLTLGRSLDIPVLAEGVETHVQLT 690

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC+  Q   +  P   + I
Sbjct: 691 ILQVEGCNEAQGYFLGRPKPIDQI 714


>gi|330817899|ref|YP_004361604.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327370292|gb|AEA61648.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 783

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 215/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L    D++      R  ++ ID+D +K +ND LG 
Sbjct: 326 EREMTQLAEYDLLTGLANRYTTLRGLRN--DVAQPSSLKRLAILFIDLDNFKTVNDTLGH 383

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + ++    LAR+ G+ F +++  ++   +    A ++ +    P 
Sbjct: 384 NAGDIVLQMTAARLSDAVEAEGTLARIGGDEFVVVVKGDDAERRAVRLAESVIRMFGKPF 443

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 444 DVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 503

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L + P I L    I G EAL++W+HP+ G I+++EF+ IAE 
Sbjct: 504 LMRWEQQLRIALSEGQLFLAFQPKIDLAQRCITGFEALVRWEHPEHGLIAANEFITIAES 563

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  +++    R +  WR++ +   + + +NI+       +L E +   I ++  
Sbjct: 564 TGLIVPIGDYVIRTACRQLARWREEGHDT-LTLAVNISPVQFWRGDLIETISQAIDESGI 622

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             +R+++  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 623 QANRLEIEITETAMMEYPELVSDKIMALKKLGIRIALDDFGTGYSSLSYLHRFAVDTLKV 682

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+ +  T++ +    E  +  L+ +G    Q    +
Sbjct: 683 DRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTETEEQVAWLSALGQIQAQGFLFS 742

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 743 RPVPVDGIPALLAR 756


>gi|190892769|ref|YP_001979311.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698048|gb|ACE92133.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 783

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 139/683 (20%), Positives = 270/683 (39%), Gaps = 39/683 (5%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
                L   S         I+    A + ++ T  I            L           
Sbjct: 130 VYYPALGLFSGLKQEEVVFISIFIFAVLTVFGTALIGNRFFVIQPLMRL----------- 178

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                +  T++L +           +   +   F  +Q  L +    + +     R +  
Sbjct: 179 --TAAIEATRQLGSRHHVDWQSNDEMGR-LAHSFNEMQTKLESE--EKELKFAHRRATDI 233

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +  +++  D        +       G    ++ G  RN+   +  N RD F      
Sbjct: 234 YNLTPAMLFSLDEEDRITAVSDYWLLATGYNRAAVIG--RNFADLVTANTRDKFVK---- 287

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                   +    +    D +   ++I +   + ++      + +  D+TE K S +   
Sbjct: 288 -RRRAESGMAVTVKFVCLDGRTMDVLI-MESEAGADAHDRLSLSVMTDVTELKASEDRNH 345

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+ NRQ F   L + +  +          + +D+D++K IND +G A GD 
Sbjct: 346 RQAITDHLTGLLNRQGFEAVLDSKIAAADASGQ-ELACLFVDLDRFKWINDNMGHAAGDK 404

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
            L+ L  R+   L   D  ARL G+ F I+L +++   +       +      P      
Sbjct: 405 ALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQIASIFETPFAPD-- 462

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708
            + ++ASIG + +     T++E+L+ +++AMY  K  G N  + F          R  I+
Sbjct: 463 -MHLSASIGISIYPHHATTAAELLQKSDMAMYAKKRDGKNGAQLFDNVMLDRARSRAEIE 521

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            ++   + ++       PI+ L    I G EAL++ +HP+ G +  +E + +AEE   I 
Sbjct: 522 ANIEAGLIDNWFEAFLQPIVNLNGRSIAGFEALMRLNHPQKGLMPPAEIISVAEETGKIV 581

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++++   ++      + M   ++ IN +        L   + A++ +    P RI
Sbjct: 582 RVGNVVMDKAIANLAKISRISGMQDTYLAINFSPLQFE-PALPARLAAIVGRHGIRPERI 640

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E+V+M +  + R+++  LR+ G  + LDDFGT  S LSYL   P D +K + S  
Sbjct: 641 VVEITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFT 700

Query: 889 TGST-------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                      +K   ++  I  ++  +  T+IA+ I  E + + L +MG DY Q     
Sbjct: 701 RAINDGDDDVRQKSRMLIEGITTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFH 760

Query: 942 SPLGFNSI-LKLLKERFPLVKNT 963
            P     +  +L+  +  + + +
Sbjct: 761 RPQHAAKLIEELMTPQSAVARAS 783


>gi|264678492|ref|YP_003278399.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262209005|gb|ACY33103.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 869

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/586 (20%), Positives = 238/586 (40%), Gaps = 19/586 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           + +V L  +   + +L      +G+ S+ ER    +    D V   +         P   
Sbjct: 218 IGLVSLWIWNTWRLILLREQVQEGLNSEKERAETTLAALSDAVITTNAKGMVNYVNPAAI 277

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRD-----NFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +LGL   S        +   +  D           +++        R +    VR  D+
Sbjct: 278 GLLGLQKQSYLDKPIKQVLQFYTMDASITSEGLLAQLVNDTKETTVVRDEQTHWVRRTDH 337

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +    M   +G     + +  D++ +++ ++ I  NA  D LTG+ NR  F  R
Sbjct: 338 SIVPVKVLGSAMQ-RDGQASGAVFVLRDVSREQQYMDQISWNARHDTLTGLENRGEFERR 396

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L  +L            ++ ID+D++K IN+  G A GD+VL  ++R +   L+  D LA
Sbjct: 397 LQKMLTQ-GLHQVKPYALLYIDLDQFKLINETSGHAAGDEVLCEVSRMLQANLRETDCLA 455

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F ++L +   S   +        +  +     E+ +    SIG        + +
Sbjct: 456 RMGGDEFAVLLENCPPSNVASIAEKLRLAAQQLQTTWGEKILRTGFSIGAVHVPGDAVNA 515

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
           S++L+  ++A Y AK RG N V  ++            +     +  A++     L    
Sbjct: 516 SDLLRMVDMACYQAKERGRNKVFFYKAEDGIYSRYVSEMEWATRIRTALDEDRFCLYAQS 575

Query: 727 IIRLMDEEI-----VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           I  L   +      +  E L++        ++   F+  AE   ++ +++ +++ R  + 
Sbjct: 576 IAPLQARKHSRHGGMHFEVLLRLRDENGQILAPGHFIPAAERYGLMPSLDRWVITRALQT 635

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +      A +      IN++   L D+ L E ++  + +   +P ++    +E+  +GN 
Sbjct: 636 LAQQPGHAKLVE-TCAINLSGPSLDDDGLLEFVKEQLQQHAIAPQKLCFEITETSAIGNL 694

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
             +  L+  LR +G    LDDFG   S L+YL  +P D +K +G  +      +   A++
Sbjct: 695 SNATRLIQSLRALGCRFALDDFGVGMSSLTYLKQLPVDYLKIDGGFVRDMLKDKGDHAMV 754

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             I  + + +    IA+ +      +EL  MG DY+Q   +A P  
Sbjct: 755 EMINRIGQTLGKKTIAEFVESREIAEELMTMGVDYVQGYAIARPKP 800


>gi|296534761|ref|ZP_06897129.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
 gi|296264912|gb|EFH11169.1| exopolyphosphatase [Roseomonas cervicalis ATCC 49957]
          Length = 686

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 242/561 (43%), Gaps = 27/561 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              ++   L             E    A++ +  ++  +      +   P          
Sbjct: 120 RMAMLCETLDDFAAGAETLRSVE----ALVHTSVMIALYAADGQILYRNPAA-------R 168

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++     ++         D  +      +  R G  +   R+R A     W  + +R  
Sbjct: 169 AALPACGTSFGDRF----VDAGQHAAFCALVEREGEGRAVARMRTARGA-RWHEVTLRRC 223

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +       ++    D++E K++       A  D LTG+PNR S           +    
Sbjct: 224 HDPATGQPAWLVSEVDVSELKEAERKADFLASHDVLTGLPNRASLHP------AFARLRQ 277

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +M ID+D +K +ND  G  VGD +LV + RR+  LL+  D + RL G+ F ++L 
Sbjct: 278 GGGVALMFIDLDGFKHVNDAFGHPVGDRLLVEVARRLRGLLRAEDEVLRLGGDEFLLLLR 337

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                 ++   A  +R+++++PI    + + VT SIG +          E+ K A+LA+Y
Sbjct: 338 RHGQPGEVESVAERLREALSLPIETAGQRLQVTPSIGISLCPEHGTDVDELAKRADLALY 397

Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G +    F   +     +R  ++ +L  A++  E  L Y P + +    + G EA
Sbjct: 398 EAKAAGRDGWCYFAAEMDRRARERHALEAELRAALQREEFELYYQPRLCVRSGRLRGAEA 457

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP+ G I+   F+ + EE  +I  +  ++L             A    + + +NI
Sbjct: 458 LLRWNHPRLGRITPDRFIGLCEETGLIIPLGRWVLAA--AARQQRAWAARGLDLSVSVNI 515

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +   D +   G+  L+ +T   P R++L  +ES +MG+   +  LL  LR  G  L++
Sbjct: 516 SPRQFRDPDFLPGITRLVRETGCDPRRLELEITESTLMGDDSATLELLTALRAQGFRLSI 575

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFGT  S L+YL   P D++K + S + G   +R  I   ++ M + ++ T++A+ +  
Sbjct: 576 DDFGTGYSNLAYLQRYPVDSLKIDRSFLAGLESERP-IAALVVAMGRLLKVTLVAEGVET 634

Query: 921 EIDIKELTRMGCDYIQDSHVA 941
           +  +  L   GC+  Q    +
Sbjct: 635 QAQLDWLRAQGCEEYQGFLCS 655


>gi|261251333|ref|ZP_05943907.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938206|gb|EEX94194.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 831

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 215/438 (49%), Gaps = 6/438 (1%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D    + + + +   A  D LTG+PNR      +   +++SA     +  VM +D+D +K
Sbjct: 385 DFENLQSTKDQLEYLANHDELTGLPNRSLLHQHIANGIEMSAA-QCCQLAVMFVDLDDFK 443

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND+ G + GD +L  + ++    L   D +AR  G+ F     +  N  +       +
Sbjct: 444 KVNDLYGHSAGDRLLSEIGKKFDAFLGPNDYVARFGGDEFIFCFSNLKNLSETESKVEQI 503

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
           +        +  + I  + SIG + + S      E++  A++ +Y +K R    V  F  
Sbjct: 504 KNVFRQQFVIDGKVIFASCSIGVSMYPSDGDDPEELISKADIVLYKSKARQKGDVLFFDS 563

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            ++       +++ +L  A++  EL + Y P +     E+ G+E+L++W +P+ G +S  
Sbjct: 564 SINQQVQYDFLLERELREAIDRGELTVSYQPQVNAKTGELYGVESLLRWYNPQLGQVSPL 623

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE+ +I  I  F++ +   + +          + + INI+   L+ +   + +Q
Sbjct: 624 EFISLAEEIGLIGRIGEFVINKACEEFVQVFPS-PDSELILSINISPMQLMYSGFIQQLQ 682

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           ++  K      RI L  +E+V++ +  +   ++ +++++G +++LDDFGT  S LSYL  
Sbjct: 683 SITDKHQLPSRRITLEITENVLINDLPKVAPVINQVKELGFTVSLDDFGTGYSSLSYLSN 742

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K +   +     +E+  +++++I+ +A++    ++A+ +  E     L   GCD
Sbjct: 743 LPLDELKIDRVFVDKMLSSEQSDSLVKAILAIARSANMRVVAEGVETEAQRAVLIEYGCD 802

Query: 934 YIQDSHVASPLGFNSILK 951
            +Q   +  P+  + + +
Sbjct: 803 LLQGYLIERPIPIDQLAR 820


>gi|149907966|ref|ZP_01896634.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
 gi|149808972|gb|EDM68903.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
          Length = 911

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 132/566 (23%), Positives = 242/566 (42%), Gaps = 16/566 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q   ++ ++ S  V  S D +   +         P    I G +S    G   N+   
Sbjct: 349 LQQQNTANLKKLSRVVECSLDGIMITNTQGVIEYVNPSFTQITGYSSTESVGEKSNFFRS 408

Query: 456 IHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                        +              E + +  +   +W  + I PM+N+ G+I  +I
Sbjct: 409 T-----TTTNATYNELWNSISNGDEWSDEVQNQHKNGDLYWAKVTIIPMTNACGEITHFI 463

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI  DIT+ +   + I   A  D LTG+ NR  F  +L+  +  S     L   +  +D+
Sbjct: 464 GIQVDITKSRIISKQIAYQAKHDMLTGLINRYEFEHQLSDAV-CSVQGSQLTHVLCFLDL 522

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND  G A GD++L  +   IG+ LK  D LARL G+ F +++     +  +   
Sbjct: 523 DQFKIINDTCGHAAGDELLRQIAGLIGDNLKPNDTLARLGGDEFAVLMRDCQLTEAVVAA 582

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + K         +   +V  SIG A   ++   +SE+L +A+LA Y AK  G N V 
Sbjct: 583 NEILDKVKKFQFIWKKSCFSVGVSIGVAEICNTSGNTSEVLIHADLACYAAKDLGRNRVH 642

Query: 694 SFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPK 748
           ++  +      R D      ++  A+      L   PI+      +    E L++     
Sbjct: 643 TYHDNDELLTARDDEFRWVNEIKEALNEDRFELYAQPIVALQDTAQKPIFEVLLRMQDKN 702

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              IS   F+ IAE   + + I+ ++++R  + + +   Q +M    I IN++   L D+
Sbjct: 703 GALISPGVFLPIAERYNLSEPIDRWVIDRTLQWMKAHSQQLDMFD-HISINLSGASLGDS 761

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + +   I++   SP +I    +E+  + N   + + +  L   G    LDDFG+  S
Sbjct: 762 DLLQHIMTTITQAKVSPQQIMFEITETAAISNLASATIFINTLSTFGCQFALDDFGSGLS 821

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             +YL  +P +T+K +G  +          A+++SI  +   ++   IA+ +  +   ++
Sbjct: 822 SFAYLKNLPVNTLKIDGIFIKDILTNPIDAAMVKSINEIGHLMKLKTIAEFVENDAIKQK 881

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           +  +G D+ Q   +  P   + +L L
Sbjct: 882 VETIGIDFAQGYGIGKPQPIDKMLTL 907



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 59/175 (33%), Gaps = 8/175 (4%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L + +    +    V+  +     V Q        +  +     + S     S   ++ 
Sbjct: 195 ILISAMFMLTVFLLFVMQTVSYRQQVKQLRDKVAQRTAELVQSEAKLSSIFEHSPVGIFH 254

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           ++     + T      I+G     + G        +      N    + S +  +    +
Sbjct: 255 YNKHGVLLRTNRHFEDIIGADKNGLIG-----FNMLKKVQNANLSKAIKSSLKGQVSTFE 309

Query: 481 YEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            E+  V      +  + + + P+ ++ G+I   +G+ +DIT Q+++   +   + 
Sbjct: 310 GEYISVSHRKKSY--LEVDLVPLYSNTGEIDGGVGVCDDITLQQQNTANLKKLSR 362


>gi|240147094|ref|ZP_04745695.1| sensory box/GGDEF family protein [Roseburia intestinalis L1-82]
 gi|257200742|gb|EEU99026.1| sensory box/GGDEF family protein [Roseburia intestinalis L1-82]
          Length = 883

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/576 (20%), Positives = 234/576 (40%), Gaps = 33/576 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASG 443
            +IQ +L        + S        +   G  ++  D   +  + T        G    
Sbjct: 329 RIIQTILVKRIAKNSLASSYASLEAILENVGCGIYVMDTQENTILYTNQHFRKAFG---- 384

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                           D      I +      +      FR   +  +  W  +    ++
Sbjct: 385 ---------------EDV-RSAGIEECLRQGAQSEDSLYFREVYSKEENRWFDLHSTRIN 428

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  +  +    D+T++K   + I   A  D LTG+ NR      L   +  +     
Sbjct: 429 WVDGRKV-LLCTIYDVTDKKLYQQKIERQANNDFLTGLYNRMRCEQDLERYIRQTKEFGG 487

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ ID+D +K IND LG   GD +L +++  +  +    +   R+ G+ F IIL  
Sbjct: 488 -EGALLYIDLDDFKHINDGLGHQYGDVLLKNISGSLQRIPGVENNCYRMGGDEFIIILAH 546

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++   +      ++     P  L   +   T S+G   + +   T  E++K A++A+Y 
Sbjct: 547 -HHMAMLQQILDEIKALFTKPWMLKGTDYYCTMSMGVVRFPADGDTVEELIKKADIALYS 605

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVEN--SELYLVYHPIIRL--MDEEIVG 737
           AK  G N +E +  +       R+ +++++  A  N  SE  + + PI+ +        G
Sbjct: 606 AKCAGKNRIEFYDDNVESTSYKRLDLEKNMRNATRNAFSEFEVYFQPIVNITKEGNPCAG 665

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+  + G I  ++F+ +AE L +I  I  F+L         W D    P   + 
Sbjct: 666 AEALIRWNSGELGLIPPADFIPLAEYLGLINPIGEFVLREACIHCKYWNDM-GHPEYKVN 724

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++   LL N++ E +  +I +T  +P  + L  +ES+ + +  R + +L  +R +G+ 
Sbjct: 725 VNLSVVQLLQNDIVERIAHVIEETRITPQNLTLEVTESLAVNDMSRMKRILADIRHLGVR 784

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S L+++  +P D +K +   +    +     A ++ +  +A  I   +  
Sbjct: 785 VALDDFGTGYSSLNHIREMPIDVIKIDRCFIIDIGKDDFSNAFVKMVGELATAIHVNVCV 844

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  +  +  L       IQ  +   P+      +
Sbjct: 845 EGVETKEQLDALVGSKVQLIQGFYFGKPMKAEMFER 880


>gi|218553843|ref|YP_002386756.1| RNase II stability modulator [Escherichia coli IAI1]
 gi|218694861|ref|YP_002402528.1| RNase II stability modulator [Escherichia coli 55989]
 gi|256018465|ref|ZP_05432330.1| RNase II stability modulator [Shigella sp. D9]
 gi|300819000|ref|ZP_07099204.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300926672|ref|ZP_07142448.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326985|ref|ZP_07220274.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|332279518|ref|ZP_08391931.1| RNase II stability modulator [Shigella sp. D9]
 gi|218351593|emb|CAU97305.1| modulator of Rnase II stability [Escherichia coli 55989]
 gi|218360611|emb|CAQ98169.1| modulator of Rnase II stability [Escherichia coli IAI1]
 gi|300417338|gb|EFK00649.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300528461|gb|EFK49523.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846368|gb|EFK74128.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|332101870|gb|EGJ05216.1| RNase II stability modulator [Shigella sp. D9]
          Length = 661

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|254244823|ref|ZP_04938145.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126198201|gb|EAZ62264.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 687

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 218/445 (48%), Gaps = 6/445 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++ + +L  +  D LTG+PNRQ    +L  ILD +      R  V+ + +D +K IN+ 
Sbjct: 240 REAEDNLLRISQYDFLTGLPNRQLLQQQLDQILDGAGRQQR-RVAVLCLGLDDFKGINEQ 298

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
               +GD +L++L  R+         LARL G++F ++        + A+ A ++   + 
Sbjct: 299 YTYQLGDQLLIALADRLRGHSARLGSLARLGGDQFALVQADIEQPYEAAELAQSILDGLE 358

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  + + E+ + A+IG   +     T+ ++L+ AE  M  AK R  N  + +  S    
Sbjct: 359 APFEIDQHEVRLRATIGITLFPEDGETTEKLLQKAEQTMTLAKTRSRNRYQFYIASVDSE 418

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    +++DL  A++  EL+LVY P +   D  +VG+EAL++W HP  G +    F+ +
Sbjct: 419 MRRRRELEKDLRDALQRHELHLVYQPQVDYRDHRVVGVEALLRWQHPLHGFVPPDLFIPL 478

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  N L   +  L+  
Sbjct: 479 AEQNGSIFSIGEWVLDQACRQLREWHDQGFD-DLRMAVNLSTVQLHHNALPRVVSNLLQV 537

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D 
Sbjct: 538 YRLPARSLELEVTETGLMEDISTAAQHLLSLRRAGALIAIDDFGTGYSSLSYLKSLPLDK 597

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      E    I+R+II + K++   +IA+ +        +   GC+  Q  
Sbjct: 598 IKIDKSFVQDLLQDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIAEGCNEGQGY 657

Query: 939 HVASPLGFNSILKLLKERFPLVKNT 963
             + PL    + + LK+   L + T
Sbjct: 658 LYSKPLPARELTQYLKQARRLSQAT 682


>gi|116252351|ref|YP_768189.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256999|emb|CAK08093.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 765

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/590 (25%), Positives = 258/590 (43%), Gaps = 34/590 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + +     R  LA+  S   V++ DI  D V     +  I GL   S       
Sbjct: 157 ARKEAEETLSRLSRRLDLALEVSRIGVFEADIEHDTVEWDDRLIAIYGLQGASRQIGGDV 216

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H +DR+    + D  V       Q E+R+   D     +  R     + NG   +
Sbjct: 217 WAKSLHPDDRERVLGLSDRSVESGSD-FQQEYRIIRGDGAERVIRARSAFFIDGNGH-RK 274

Query: 512 YIGIANDITEQKK---------------------SLEGILCNAFQDNLTGIPNRQSFLDR 550
            IG   D+TE+                       + E I   A  D LTG+PNR+     
Sbjct: 275 LIGANWDVTEEVALRNELRRAKDLAEARNRELEAAKESIEHLALHDYLTGLPNRRYLDKM 334

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L            L   ++ ID+D++K+IND LG   GD +L      +   ++  D +A
Sbjct: 335 LDERAAEC-RAKGLALAILHIDLDRFKQINDTLGHRAGDAMLQHAASVLRTSVRAVDFVA 393

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I+ I +  S KIA  A  + + +  P+     +    ASIG A  +  K+ +
Sbjct: 394 RIGGDEFVILCIVDPASKKIASLAERVIRELRKPVRYEGHDCRFGASIGIAIDSGPKLDA 453

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPII 728
            +ML +A++A+Y AK  G N  E F  S+ R       + +++ + +E +E    Y    
Sbjct: 454 KQMLLDADIALYRAKGLGRNRFEFFSASARRDIISAKHLADEILIGLERNEFVPFYQLQF 513

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++ G+E L +W HP  G ++   F+ IAE+L ++  I+  +LER   D   W   
Sbjct: 514 DARTLDVAGVETLARWQHPVHGLLTPDRFLDIAEDLDVVSTIDALILERAIADRKVWLKD 573

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLL 847
               P  I +N++++ L D +L + ++AL       P        ES+ + +  E     
Sbjct: 574 GLPIP-KISVNVSARRLADPDLGKKLRAL----KIEPGTFSFELLESISLDDCDEAVAAN 628

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +LRK+GI + +DDFGT  + +  L  +   T+K +  L+     + ++  ++ SII +
Sbjct: 629 LKKLRKLGIDIQIDDFGTGHASIVSLLRLSPKTLKIDRELIRMLPQSAEQRKLVGSIIDI 688

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++   +IA+ +     I+ L  + CD +Q   +A P+    I   ++ 
Sbjct: 689 GRSLNILVIAEGVETAEHIRILEELDCDTLQGYALARPMPAMQIPSFIRA 738



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 2/138 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHI 458
           +     R + A++GSG  VWD +   DR   +P   TI G+A      G    WL  +H 
Sbjct: 34  LAERESRWNYALVGSGLGVWDHNYRLDRKYYSPTWKTIRGMAPDEETDGDYEAWLQLVHP 93

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
           +DRD     +D           +E+R R  D  + W+  R   +  + NG   R IG   
Sbjct: 94  DDRDFVVDAIDRQNAGDPNYQVFEYRERHKDGHWVWIECRGACVEWDQNGVPTRIIGTDT 153

Query: 518 DITEQKKSLEGILCNAFQ 535
           DIT +K++ E +   + +
Sbjct: 154 DITARKEAEETLSRLSRR 171


>gi|289647598|ref|ZP_06478941.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 712

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/615 (19%), Positives = 253/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GS-----------GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SAQAFNASVLANVAEGILVVDEAGTISFANPAICQLLSASVDQLRGTQVLDY-IIEPQVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D   +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 DWLESGFYKHYRKADTYRVHDAVLRTAQGTQLPVALSCAALPAEQ---KAMVMTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     +  +L       +    V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLFQAVEGMLLR-KEQTDKYLVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 ALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P + + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGKDFSVVYQPQVHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W        + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSRVFAA-DVVLSVCVSPTQFCMPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E  ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITEGSLVHNLTHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +    E R   A+  SII +++N++  +IA+ +      + L   GC  +Q 
Sbjct: 623 TLKLDRRFVANIVESRREAAMASSIIDLSRNLDMLVIAEGVETPEQYQWLADNGCQVMQG 682

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 683 FLIAHPMVPEDALRF 697


>gi|327253982|gb|EGE65611.1| protein gmr [Escherichia coli STEC_7v]
          Length = 661

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 247/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLREVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +  + +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESKKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|317049551|ref|YP_004117199.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
 gi|316951168|gb|ADU70643.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
          Length = 696

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/686 (21%), Positives = 289/686 (42%), Gaps = 51/686 (7%)

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
               +A  +    + +      A    + + ++       +    +  Y+  +      I
Sbjct: 28  MAGRVATASGKSALVWLLGGGFA--MGVGIWAMHFIGMLSMSLDMVMSYDPLLTATSMVI 85

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            I      LW+     L    +    +     +V +    +   + A G    G +    
Sbjct: 86  AILASIFALWLVCAGELPWTRLCGGALVLGFGVVAMHYTGMAALMFAPGIVWNGYWVAAS 145

Query: 406 RQSLAVLGSGDIVW---DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              +A++ SG  +W          RV       T+L L +  + G     +  +H     
Sbjct: 146 -VVIALVASGVALWLAFTLREGTGRV-------TLLRLGASVVMGCA---IAGMHYTGMA 194

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                + S   +                   W+ + +  ++ +   IL    + + +  +
Sbjct: 195 AANFPMQSHATHMGVNSN-------------WLAMLVTVVTLA---ILGITLLVSMLDAR 238

Query: 523 KKS------------LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++               +   A  DNLT +PNR    DRL   ++ +  + +    +M 
Sbjct: 239 MQARTSILARSLAEANRELAQLALHDNLTRLPNRILLEDRLDQAINKADREQS-HFALMF 297

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +ND  G  VGD++L+++T R+   +K    LAR+ G+ F +++   ++    
Sbjct: 298 MDLDGFKAVNDAFGHHVGDNLLIAVTERMTGQMKGHYTLARMGGDEFVLLIE-IDDPNDA 356

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  A A+ K+I  P ++   E+ V+ SIG A +    +   E++ NA+ AMYH K+ G N
Sbjct: 357 AAAADALVKAIEKPFSISRYELVVSLSIGIAVYPGDGVDERELMFNADAAMYHTKNNGRN 416

Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F+ S       ++ +  DL  A++N EL L Y P        I+G EAL++W HP 
Sbjct: 417 GYNFFQPSMNTLAQSQLQLNNDLWQALDNDELRLFYQPKYCAPRGPIIGFEALLRWQHPT 476

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G ++  +F+ +AE+  MI  I  +++    R + SW  Q   P   + +N+++      
Sbjct: 477 RGLLTPDKFLPMAEKTGMIVNIGNWVINEACRQLHSWHLQ-GHPHWSVAVNLSALQFEQC 535

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L E + + + +       + L  +E+  M +PE S  +L  L  +G+  ++DDFGT  S
Sbjct: 536 NLVETVTSALDQHQIPAELLTLEVTETTAMRDPEESVRILTELTNMGVKASIDDFGTGYS 595

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P   +K + + +       +   I+ +I+ +A++++  ++A+ +  E     
Sbjct: 596 SLLYLKRLPASELKIDRAFVNELQAKSEDATIVSAIVALAQSLDLKVVAEGVETEEQQAF 655

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           LT +GC+ +Q   +  PL  + I +L
Sbjct: 656 LTGLGCNSLQGYLLGRPLPPDRIGEL 681


>gi|156935782|ref|YP_001439698.1| hypothetical protein ESA_03652 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534036|gb|ABU78862.1| hypothetical protein ESA_03652 [Cronobacter sakazakii ATCC BAA-894]
          Length = 698

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/432 (29%), Positives = 219/432 (50%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +  R  +M +D+D +K +ND  
Sbjct: 252 EANKELAQLALHDTLTRLPNRILLEDRLDQAIRKADR-EGSRFALMFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+++T R+ E LK    LAR+ G+ F  +L   +     A  A A+  +I  
Sbjct: 311 GHNTGDQLLIAVTERLKEQLKGQFTLARIGGDEFV-LLAETDQPNDAAALANALVHAIDG 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT SIG A +        E+L NA+ AMYH KH G N    F+  +++  
Sbjct: 370 PFAVEPYELVVTISIGIAFYPHDGKNGRELLFNADAAMYHTKHTGRNGYSFFQPSMNTQA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA E  EL LVY P  +     +VG EAL++W HP++G +S   F+ +A
Sbjct: 430 QTQLQLMNDLWLARERKELRLVYQPKFQAPSGPVVGFEALLRWQHPQYGLLSPDAFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  MI +I  ++L+   R +  W    +     + +N+++       L E + + + + 
Sbjct: 490 EKTGMIISIGEWVLDEACRQLNEWHQAGHH-AWSVAVNLSTMQFEQPGLVEMVMSCLERH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++ L  +E+  M NP+ S  LL RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 QIAPEKLILEVTETTAMSNPDESVRLLTRLTELGVKASIDDFGTGYSSLLYLKRLPASEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +       +   I+ +I+ +AK +   ++A+ +      + LT +GC+ +Q   
Sbjct: 609 KIDRAFVNELRAEGEDATIVSAIVALAKTLNLRVVAEGVETVEQQQFLTELGCNTLQGYL 668

Query: 940 VASPLGFNSILK 951
           +  PL    I +
Sbjct: 669 LGKPLAPEVITR 680


>gi|95928628|ref|ZP_01311375.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
 gi|95135418|gb|EAT17070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfuromonas acetoxidans DSM 684]
          Length = 1012

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 132/595 (22%), Positives = 265/595 (44%), Gaps = 20/595 (3%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
              I IG    + +         +     R   A+  +  +V   D  R  + +       
Sbjct: 425  EFIAIGQAANRMLEQRRIAEDELNDTRLRFRTALERAPLMVALVDPQRYILFSNSMWNDA 484

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            + +   + H    +W           F T  D  V  R  + +++  ++    +  +  +
Sbjct: 485  VPMDVCAAH-LEAHWFS---EASWVKFDTAFDQMVKGRLQQERFDICLKNVQGEKRYYDM 540

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +  + N++G+    + +A DITE++++ E +   A  D LTG+ +R    ++L  +L  
Sbjct: 541  ALATIQNADGENSSILVMARDITERRQAEERLTWLAHYDALTGLAHRNYAKEQLEQMLTG 600

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
               DD     +++ DI+++K+IN+V G A+GD VL  L +R+  L   P I ARLS N F
Sbjct: 601  EVADD---LWLLMFDINRFKRINEVYGHAMGDFVLKELAQRLQSLQPSPRISARLSSNEF 657

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             I++ S  +   I +     +  +  P+   +  + V   I           ++E+L  A
Sbjct: 658  IIVI-SLPDDESIDETVERFKAVLCAPLQCNDNRLVVDTRISGVCC-HQVEDAAELLHRA 715

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVEN-SELYLVYHPIIRLMDE 733
            ++A+   K                        +++ L LA+++  +  L + PI  L  +
Sbjct: 716  DVALREVKEGRHTQGFMVYDERLDQIYQENELLEKALRLALQSPEQFQLHFQPIWSLNPQ 775

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             + G EAL++W HP +G IS + F+ +AE+  +I  +   + +R    +  W  +     
Sbjct: 776  HLKGFEALVRWQHPTFGLISPARFIPLAEQRALIVPLGQIIFKRACETLAQWLKRYPTVQ 835

Query: 794  ---IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
               + + +N+A +  +     E ++A +      P  + +  +E+ +M +PE +   +  
Sbjct: 836  QGMVRLSVNMAPQQFVTENFIEEIEATLELWSLPPEILCIEITETSLMEDPELAIQRIRA 895

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKN 908
            L+++GI++++DDFGT  S LSYL     D +K + SL+    E      I+ +++ +  +
Sbjct: 896  LKEMGIAISIDDFGTGYSSLSYLQQFDVDIIKLDRSLVVNIAETHSAQRIIDAVVRLGHD 955

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK--ERFPLVK 961
            ++ TI+A+ +     +++L ++ CD IQ      P     +   L   E+FPL +
Sbjct: 956  LDLTIVAEGVETFDQLQQLRKLNCDAIQGYLTGKPCPIEGVHDWLSAPEKFPLSR 1010


>gi|330986674|gb|EGH84777.1| sensory box protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 820

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/595 (21%), Positives = 248/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  +  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIITGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +    +E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGDEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 793


>gi|126661571|ref|ZP_01732610.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Cyanothece sp.
           CCY0110]
 gi|126617143|gb|EAZ87973.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with GAF sensor and FHA domain [Cyanothece sp.
           CCY0110]
          Length = 469

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/442 (28%), Positives = 228/442 (51%), Gaps = 6/442 (1%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT +K++ E +   AF D LT +PNR  F ++L   L  +  +D     ++ +D+D +K
Sbjct: 29  DITARKRAEENLEYRAFYDTLTDLPNRNYFDEKLEVALVEAKKND-YLMALLFLDLDSFK 87

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG  +GD +L S  +R+   ++  D+++R  G+ F ++L   N+     + A  +
Sbjct: 88  NVNDTLGHKIGDQLLKSFAQRLSCCVRNDDVVSRWGGDEFTLLLPQINSPEDTINLAQRI 147

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P  +   ++ +  SIG A +      +  +LKNA+ A+Y AK RG NH   +R 
Sbjct: 148 LDDLKQPFEISGHQLYIKTSIGIAIYPQDGEDAETLLKNADAALYRAKERGRNHYRFYRS 207

Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +     S  + ++  L  A+E     L Y P ++L   +I G+EAL++W HP+ G+IS  
Sbjct: 208 TMTSKASLLLKLENLLYQALEEESFSLYYQPQLKLTTHKISGMEALLRWYHPELGHISPM 267

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  I++++L+   +   +W+ Q    PI I +N++ K      L   + 
Sbjct: 268 RLIPLAEQTDLIIPISIWVLKTACQQNKAWQKQ-GFSPIPIAVNLSPKQFQQPNLVNIVS 326

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T   P  ++L  +E+ +M N + S+  L +LR +G+ ++LDDFGT  S L YL  
Sbjct: 327 QVLEETELEPYLLELEITETAIMENSDFSQETLRQLRDLGVQISLDDFGTGYSSLGYLQK 386

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P  T+K + S +       K  AI+ +II + K+ +  ++A+ +     ++ L R+ C 
Sbjct: 387 FPITTLKIDQSFIQNLQNNSKNTAIISAIIALGKSFDLRVVAEGVETLQQLELLQRLNCQ 446

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            IQ    + PL        L +
Sbjct: 447 EIQGFWFSRPLKSADATTFLSQ 468


>gi|307319822|ref|ZP_07599246.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|306894553|gb|EFN25315.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
          Length = 530

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 135/523 (25%), Positives = 226/523 (43%), Gaps = 23/523 (4%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            + +      AT+ G     + G  R  L       R        + +G   G  + E  
Sbjct: 6   GEVIEVNERFATLSGRKPAELVGRQRRELFAEAPERRS------SNDLGAGEGASEGE-- 57

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +  AD  +  +    R +    G     I    D+T +K +   I   A  D LT + NR
Sbjct: 58  LLHADGGYVPVERLCRTI-EYKGRQCDVI-FVRDLTARKDAERTIEHLAHHDALTDLSNR 115

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            SF  RL   L  +   D+    V+ +D+D++K +ND+ G   GD +L  +   +     
Sbjct: 116 SSFDRRLRQALAAAVHHDDA-LAVLCLDLDRFKAVNDIFGHGEGDRILRKVADILRAAAG 174

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +ARL G+ F I+             A  + K  +  ++     + V  SIG A   
Sbjct: 175 EADTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRRDPMAVGVSIGVAICP 234

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
               T+  +  NA+ A+Y AK  G      F          R  I+ DL  AV   +L+L
Sbjct: 235 GDGTTAERLYGNADTALYRAKQTGKGIACFFDAEMDAAVRTRRQIENDLRHAVVRRQLFL 294

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P++ + D+ IVG EAL++W HP  G +  + F+ IAEE   I  I  ++LE    + 
Sbjct: 295 EYQPLVDVRDDRIVGYEALLRWRHPDRGLVGPNLFIPIAEESGSIIQIGEWVLEEACSEA 354

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           + W +     P+ + +N++    L   L + +++++ +T     R++L  +E+ +M N +
Sbjct: 355 VRWHE-----PLPVSVNVSPVQFLLPNLFDRIESILMRTG---RRLELEITEAALMHNRD 406

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILR 900
                L RLR +G+ + +DDFGT  S LS L   PFD +K + S            AI+R
Sbjct: 407 DVLATLVRLRLLGVRIVMDDFGTGHSSLSNLQTFPFDKLKIDCSFTASLDKDPAAHAIIR 466

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +II +  ++   ++ + +  E   + +   GC  IQ      P
Sbjct: 467 AIIALGHSLNLPVVTEGVETERQRQIIVDEGCRQIQGFLTGRP 509


>gi|320105551|ref|YP_004181141.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Terriglobus saanensis SP1PR4]
 gi|319924072|gb|ADV81147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Terriglobus saanensis SP1PR4]
          Length = 826

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 139/681 (20%), Positives = 260/681 (38%), Gaps = 28/681 (4%)

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
            +     S    + +              I     A+  L +           +  +V  
Sbjct: 143 WLAIALSSLPVTLLLNLGFKGSVDERYECIPLQMFAACGLLFFALPAKAQAGRWIGSVGF 202

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDII-QPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           +       +                I   P  + G  +I+ +I              +  
Sbjct: 203 LLWAGCYSVLCFFTGHTALLLTTWQIWNIPRYLVGFGMILKVIE-----------QDTAA 251

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +    E   L    +   +W +D V +R ++         G                   
Sbjct: 252 LKELSEEYRLLYENNPHPMWIFDSVTNRFLSVNDAAVQNYGYTREEFL--SMTIFDIRPE 309

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +R      L       +   Q+    R  +     + I    ++   G   R++    D
Sbjct: 310 RERKKLAAELHDPQLLNKNVWQH----RRKNGSLFEVEITAHHVTFL-GKPARFVLTM-D 363

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+++    ++ NA  D LTG+PNR    DR    L  +  + +L   +  ID+D +K+
Sbjct: 364 ITEREELNRSLVHNAQHDPLTGLPNRLLLEDRAQQALLRARREKDL-VALFTIDVDHFKQ 422

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G  VGD+VL+++ +R+   ++  D LAR  G  F +I+    + +    FA  + 
Sbjct: 423 VNDTFGHPVGDEVLMAIAQRLKSRVREADTLARTGGEEFTLIVGGIRSEIGARKFASILL 482

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH--VESFR 696
                PI L   EI  + SIG A +     T  E+ K ++ A+Y AK  G N     S  
Sbjct: 483 DIFLHPIKLPAHEIKTSISIGVALFPEDGDTLEEIRKQSDKALYQAKRLGRNRAVFSSEG 542

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +   +   I+  L  A+    + +VY PI       I  +EAL++    +   I  ++
Sbjct: 543 LRAEVDETEKIEASLRQAIHEKSIQVVYQPIFD-SARRICCVEALVRIAPLQADGIGPTQ 601

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAEE  +I  + L +LER    I +WR       +   +N++   +      + + A
Sbjct: 602 FIPIAEETGLIVPLGLLVLERACEQIAAWRRD-GTGCVEFAVNVSCHQMFQTGYADQVLA 660

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++    P  + L  +E+ ++ +       +  L   G+  ++DDFGT  S L  L  +
Sbjct: 661 TLNRFDLPPQLLHLELTETTILRDFSDIVQGMNLLAASGVRFSIDDFGTGYSSLERLTEL 720

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P  TVK + S +        A  I+++I  +AK+++  ++A+ +  E  I+ L  +    
Sbjct: 721 PIATVKIDRSFIHKLPGHTGALGIVQAISQIAKHLDLDVVAEGVETEEQIELLLDLDRHK 780

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   ++ PL        +  
Sbjct: 781 LQGFLLSRPLSAAEFSARVAS 801


>gi|323977080|gb|EGB72167.1| EAL domain-containing protein [Escherichia coli TW10509]
          Length = 661

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 247/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLREVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +  + +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESKKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|220913598|ref|YP_002488907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter chlorophenolicus A6]
 gi|219860476|gb|ACL40818.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter chlorophenolicus A6]
          Length = 584

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 134/576 (23%), Positives = 244/576 (42%), Gaps = 30/576 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  +       D                G     + G        + + D+  + T
Sbjct: 12  FESLFHQAPCGYLITDDDGHIAAVNDTFVRWTGYNRAELLGKRLQ--SLLPVGDQILYAT 69

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-- 524
                +G      +    +  +D   H  ++     + +  +      I     E++   
Sbjct: 70  HCIPQLGITGSVSEIALDIIGSDGVRHPALLTASRFAATGQEPDSVRVIIFSAHERRLYE 129

Query: 525 -------------------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                              + + +   A  D+LTG+PNR     R       SA + N  
Sbjct: 130 KELVSALRAAEESDARRALAEQELQRLALHDSLTGLPNRAGLKARFGEAPPDSAIEGNPL 189

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +  ID+D +K +ND LG   GD++LVS+  R+   ++ P  +ARLSG+ F  ++ +  
Sbjct: 190 GAL-FIDLDHFKAVNDSLGHGAGDNLLVSVAGRLAAAVQAPGAVARLSGDEFV-VVDTVA 247

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            + + A  A  +   IA PI+L + EI  +ASIG A   +   T  ++++ A++AMY AK
Sbjct: 248 GTEEAAALAARLLDVIAAPIHLEDLEIVTSASIGIAVARAGDDTLEDLIRRADIAMYRAK 307

Query: 686 HRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N  E  R ++       ++   +L   +    L + Y P I L      G+EAL++
Sbjct: 308 ERGRNRWELHRPAASDPAVDRLRALGELRRGIGEGALRVHYQPRIDLHTGRASGVEALVR 367

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIAS 802
           W HP  G +  SEF+ +AEE  +++ +  ++L+   +   S R    +   +   +N+++
Sbjct: 368 WQHPTRGLLPPSEFIAMAEESGLVRPLGAWVLDETLKLAESLRRDDRHGAGLEFAVNLSA 427

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L D  L + +++ + +    P+ + L  +E+ +M +P  +   L  L+ +G+ L +DD
Sbjct: 428 RQLNDPGLVDMVESALERRNLDPALLLLEITETALMSDPGAAVESLAALKNLGVGLAVDD 487

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P + +K + S +   G      AI+ S I +A  +    +A+ +  
Sbjct: 488 FGTGYSSLTYLKKFPINELKIDRSFIMGLGLDSGDAAIVGSCIDLAHAVGIRAVAEGVET 547

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               + L  MGCD  Q    A PL    + + L   
Sbjct: 548 SGQAQTLQDMGCDLAQGYLFARPLPEPRLREWLASH 583


>gi|330889356|gb|EGH22017.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 820

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 248/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +    +E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGDEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 793


>gi|157160794|ref|YP_001458112.1| RNase II stability modulator [Escherichia coli HS]
 gi|170020348|ref|YP_001725302.1| RNase II stability modulator [Escherichia coli ATCC 8739]
 gi|157066474|gb|ABV05729.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli HS]
 gi|169755276|gb|ACA77975.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli ATCC 8739]
          Length = 661

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|254448531|ref|ZP_05061991.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
           proteobacterium HTCC5015]
 gi|198261914|gb|EDY86199.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
           proteobacterium HTCC5015]
          Length = 796

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 108/574 (18%), Positives = 239/574 (41%), Gaps = 14/574 (2%)

Query: 386 VIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +Q  +     ++  + +  E        +  + +  +   + ++     A  LG    +
Sbjct: 226 AMQEDMQKRELAEKALSASRENYRALYDHNPSMFFTVNFEGELISVNEFGARQLGYDVQN 285

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G     L   H +       +    +   +   + + ++ A D    W+    R ++ 
Sbjct: 286 LVGQPIGNLYR-HGDSESVIYQLSKEHIEEGKLH-RRDVQMVAKDGSPLWVRETARVING 343

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G+  + + ++ DI+E ++    +   A  D LTG+ NR  F  RL  +++ +  DD+ 
Sbjct: 344 RHGE-NQVLIVSEDISEARQLSNQLSHQASHDALTGLVNRGEFERRLRQLVERAHVDDSG 402

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +D+D++K IND  G   GD++L  L   +   ++  D LARL G+ FG+++ + 
Sbjct: 403 H-ALLYLDLDQFKIINDTCGHVAGDELLRQLAGLLKHKVRKGDTLARLGGDEFGVLVENC 461

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                            +           +  SIG AS  S     ++++  A+ A Y A
Sbjct: 462 TMEDAERLAQTMCDVVASFQFFWGVSSFRIGVSIGLASIASGSGDYADIMSQADSACYAA 521

Query: 685 KHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI--VGL 738
           K  G N V  +R +      R   +     +   +E     L + PI+ + +  +     
Sbjct: 522 KDLGRNRVHIYRENDAELARRFGEMQWVSKIESTLEQDRFELYFQPIVPIDNTRLDGRHY 581

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++        +  + FM  AE   ++  I+  ++ +  R +    D      +   +
Sbjct: 582 EVLVRMRDVDGNIVPPASFMSAAERYNLMGRIDRKVVSQTLRWLSLHPDHLKNLSV-CSV 640

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ + L+D++  E +   + +    P ++    +E+  + N  ++   +  L+  G   
Sbjct: 641 NLSGQTLMDDDFLEFIFDELKQWNVDPRKLCFEVTETAAIENLTKASDFIRSLKDRGCKF 700

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFG+  S  +YL  +P D +K +G  +          +++RSI  +A+ +    +A+
Sbjct: 701 SLDDFGSGLSSFAYLKNLPVDYIKIDGLFVRDIVKDPIDYSMVRSINEIAQVMGKKTVAE 760

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +  E+ +  L  +G DY Q  +++     + ++
Sbjct: 761 FVEDELILNALRNIGVDYAQGYYISRDQPISRLV 794


>gi|320323360|gb|EFW79448.1| sensory box protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 820

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 248/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +    +E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGDEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 793


>gi|17231717|ref|NP_488265.1| hypothetical protein all4225 [Nostoc sp. PCC 7120]
 gi|17133360|dbj|BAB75924.1| all4225 [Nostoc sp. PCC 7120]
          Length = 565

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 224/438 (51%), Gaps = 8/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             K  E I   +  D LTG+PNR+   +R+   L  S         VMV+ ID +  I+ 
Sbjct: 124 LHKLDELIDYISNYDKLTGLPNRELLRERVNQAL--SQQYSQKMLAVMVLGIDDFTGISH 181

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            L     + +L ++ +R+   L   DILA LSG+ F I  +   +   I   +  +  ++
Sbjct: 182 ALEHEQSNLLLRAVAQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIIKLSQLLLTTL 241

Query: 642 AMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
             P  +   +I +TASIG             ++L+ A +A+Y AK +G +  + +     
Sbjct: 242 NKPFTIQGNQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEIN 301

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++ +L  A+E +E+ + Y PII L  ++I  +EAL++W HP  G +S ++F+
Sbjct: 302 AQLQERLALENELHGALERNEIVVYYQPIIDLQTKQITAVEALVRWQHPTRGLVSPAKFI 361

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  I  ++L        +W+  A +PPI + +N++++   ++ L E +  +I
Sbjct: 362 PIAEANGLIVEIGEWVLRTACLQNRTWQ-LAGLPPIRMSVNLSARQFEESNLVELVSEII 420

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   PS ++L  +ES +M + +RS  +L +LR++G+ L LDDFGT  S L+YL   P 
Sbjct: 421 QESGLHPSYLELEVTESSLMTDIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV 480

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +    S     A+  +II +AK+++  I A+ I  +  +  L + GC   Q
Sbjct: 481 NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQ 540

Query: 937 DSHVASPLGFNSILKLLK 954
             +   P     I+++L+
Sbjct: 541 GYYFGIPAPAKEIMEILQ 558


>gi|294492300|gb|ADE91056.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli IHE3034]
          Length = 661

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/575 (21%), Positives = 249/575 (43%), Gaps = 20/575 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIGVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + G +  Q    A P+   +  +  K     +K T
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRY---LKRT 661


>gi|91210581|ref|YP_540567.1| RNase II stability modulator [Escherichia coli UTI89]
 gi|110641521|ref|YP_669251.1| RNase II stability modulator [Escherichia coli 536]
 gi|117623544|ref|YP_852457.1| RNase II stability modulator [Escherichia coli APEC O1]
 gi|191170882|ref|ZP_03032433.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli F11]
 gi|218558276|ref|YP_002391189.1| RNase II stability modulator [Escherichia coli S88]
 gi|237705314|ref|ZP_04535795.1| RNase II stability modulator [Escherichia sp. 3_2_53FAA]
 gi|300971816|ref|ZP_07171650.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|91072155|gb|ABE07036.1| hypothetical protein YciR [Escherichia coli UTI89]
 gi|110343113|gb|ABG69350.1| hypothetical protein YciR [Escherichia coli 536]
 gi|115512668|gb|ABJ00743.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190908614|gb|EDV68202.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli F11]
 gi|218365045|emb|CAR02748.1| modulator of Rnase II stability [Escherichia coli S88]
 gi|226900071|gb|EEH86330.1| RNase II stability modulator [Escherichia sp. 3_2_53FAA]
 gi|300309322|gb|EFJ63842.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|307627138|gb|ADN71442.1| RNase II stability modulator [Escherichia coli UM146]
 gi|315289128|gb|EFU48526.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|320195698|gb|EFW70323.1| RNase II stability modulator [Escherichia coli WV_060327]
 gi|323949109|gb|EGB45001.1| EAL domain-containing protein [Escherichia coli H252]
 gi|324006099|gb|EGB75318.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
 gi|324011295|gb|EGB80514.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 661

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/575 (21%), Positives = 249/575 (43%), Gaps = 20/575 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + G +  Q    A P+   +  +  K     +K T
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRY---LKRT 661


>gi|124266627|ref|YP_001020631.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124259402|gb|ABM94396.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 716

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/443 (26%), Positives = 216/443 (48%), Gaps = 14/443 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR-------PTVMVIDIDKYK 577
           + + +   A+QD LTG+PNR  F  RL+  +        L          V+ ID+D +K
Sbjct: 258 ANDELSRLAYQDALTGLPNRSYFESRLSQAVARIERLRELPTPSASAGLAVLFIDLDGFK 317

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G A GD VL ++  R+ E ++  D LARL G+ F +++   + +      A   
Sbjct: 318 PINDSYGHAHGDLVLQAVAVRLREAVRAADTLARLGGDEFIVLVEDVSCAGDCIHVAKRA 377

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S+  P+ ++ + + ++ SIG A +  +   +  ++ +A+ AMY AK  GG+    +  
Sbjct: 378 LASMGEPLVVVGQPVHLSCSIGVAMYPDAG-DARRLIAHADAAMYEAKRGGGSTYAVYES 436

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +  +       +  DL  A+E  EL L Y P + L  + I G+EAL++W HP+ G +S  
Sbjct: 437 AMNQGADQQVALYNDLVTAMERGELQLHYQPKVDLRTDTIRGVEALMRWRHPQRGMVSPV 496

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE   +I  +  ++++   R + +W D+     + + IN+++  L+  +L E + 
Sbjct: 497 AFIPVAERFGLINTLGAWVIDEACRQLSAWADEGLH--MRVAINLSAHQLMQADLTERVA 554

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++      S++    +ESV M +   ++  +  L  IG+ L +DDFGT  S LSYL  
Sbjct: 555 DALALHQVEASQLICEITESVAMEDTRVTQRAIDGLLAIGVQLAIDDFGTGYSSLSYLRQ 614

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +    +K + S +     +    A++ ++I +A  +   ++A+ +        L  MGCD
Sbjct: 615 LRARQLKIDRSFIRDLAGSSDARAVVDAVIRLAHALGMQVVAEGVEETDQRDLLVEMGCD 674

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            +Q    A P+  + I    + R
Sbjct: 675 QLQGFLYAKPMAADDISYWARHR 697


>gi|238751630|ref|ZP_04613120.1| phosphodiesterase [Yersinia rohdei ATCC 43380]
 gi|238710192|gb|EEQ02420.1| phosphodiesterase [Yersinia rohdei ATCC 43380]
          Length = 875

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 215/440 (48%), Gaps = 8/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S + I   AF D LTG+PNR  FL      + L+    +    V+VI++D++K++N
Sbjct: 437 ERELSRKQIQQLAFYDPLTGLPNRSQFLVYAQQAITLATESGH-SLAVLVINLDRFKQVN 495

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L ++ +R+   L   D++ RLSG+ F I+        +       +   
Sbjct: 496 DSLGHAAGDELLAAIAQRLRHELSKNDLIGRLSGDEFIILAP--CTMQQATVKVEKLLSL 553

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +ASIG + +  + +    ++ +A++AM+ AK  G  H   F V   
Sbjct: 554 LSQPCIIASVNIIPSASIGISLYPENGVGMDMLMNHADIAMHKAKKLGSGHFNFFSVEMN 613

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++    +++ L  A     L L Y P + L D  + G+EAL +W HP  G+I  + F+
Sbjct: 614 NINQQRQDMEDALRHAFHIGSLQLFYQPQVMLKDGHLYGVEALSRWIHPVLGDIPPNRFI 673

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  + L+ L    + +  WR +    P  + +N++  +  +  L + + +++
Sbjct: 674 PIAEECGLINELALWALNTACQQLADWRLRGVDIP-SVSVNLSPSNFHNPGLPDTISSIL 732

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 733 QHYNLPPQDLTLEITEDILIENNPAIFATIQKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 792

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E    +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 793 DEIKLDKSFVHDLEYDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYQIGQ 852

Query: 937 DSHVASPLGFNSILKLLKER 956
               +  L    + K ++ R
Sbjct: 853 GFLFSEALPAIKLEKWIQHR 872



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 75/233 (32%), Gaps = 25/233 (10%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           + ++G  +    +A    +  +  +     L  L S   + ++D+    +    +     
Sbjct: 6   LFIMGIIMKPKKIAASKAATPLEYNENNALLRALDSSLAIIEFDLSSQIIAVNQNYLDYF 65

Query: 439 GLASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           G     + G           +D         +   +      L+  F     D    W+ 
Sbjct: 66  GYQRDEVIGQHHLMFC---PHDYATSDEYRTIKQCLRA-GESLEGTFERLHKDGSTVWLA 121

Query: 497 IRIRPMSNSNGDILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              +P+   +G + R + IA DIT   EQ+K+ +  +       LT +       DR  +
Sbjct: 122 AIYQPVPGPDGTLTRVVKIAKDITFLIEQQKATQEWVQL-----LTQL------TDRSDS 170

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            + +SA     +  V  I+   + K+    G      +  ++   +       
Sbjct: 171 AMFISANSKQGQQAV-YIN-QGFTKL---FGYTPEQALGQNMVDLLQSEHPEQ 218



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G    + L   H        + L         +   E    
Sbjct: 185 VYINQGFTKLFGYTPEQALGQNMVDLLQSEHPEQLALMDSTLPDTHQQLLPK---EL-FY 240

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + D Q HW    I  ++N  G+    IG+  DIT  K   
Sbjct: 241 SKDRQPHWCSAVINSLANGQGEQSYSIGVLTDITMTKMYE 280


>gi|241204854|ref|YP_002975950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858744|gb|ACS56411.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 763

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 146/590 (24%), Positives = 257/590 (43%), Gaps = 34/590 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + +     R  LA+  S   V++ DI  D V     +  I GL   S       
Sbjct: 155 ARKQAEETLSRLSRRLDLALEISRIGVFEADIEHDTVEWDDRLIAIYGLQGASRQIASDA 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H +DR+    + D  V       Q E+R+   D     +  R     + NG   +
Sbjct: 215 WAKSLHPDDRERVLGLSDRSVESGSD-FQQEYRIIRGDGAERVIRARSAFFIDGNGH-RK 272

Query: 512 YIGIANDITEQKK---------------------SLEGILCNAFQDNLTGIPNRQSFLDR 550
            IG   D+TE+                       + E I   A  D LTG+PNR+     
Sbjct: 273 LIGANWDVTEEVALRNELRRAKDLAEARNRELEAAKESIEHLALHDYLTGLPNRRYLDKM 332

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L            +   ++ ID+D++K+IND LG   GD +L      +   ++  D +A
Sbjct: 333 LDERAAEC-RAKGMAMAILHIDLDRFKQINDTLGHRAGDAMLQHAASVLRTSVRAVDFVA 391

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I+ I +  S KIA  A  + + +  P+     +    ASIG A  +   + +
Sbjct: 392 RIGGDEFVILCIVDPASKKIASLAERVIRELRKPVRYEGHDCRFGASIGIAIDSGPTLDA 451

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPII 728
            +ML +A++A+Y AK  G N  E F  ++ R       + +++ + +E +E    Y    
Sbjct: 452 KQMLLDADIALYRAKGLGRNRFEFFSAAARRDIISAKHLADEILIGLERNEFVPFYQLQF 511

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++ G+E L +W HP  G ++   F+ IAE+L ++  I+  +LER   D   W   
Sbjct: 512 DARTLDVAGVETLARWQHPVHGLLTPDRFLDIAEDLDVVSTIDALILERAIADRKVWLKD 571

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLL 847
               P  I +N++++ L D +L + ++AL       P        ES+ + +  E     
Sbjct: 572 GLPIP-KISVNVSARRLADPDLGKKLRAL----KIEPGTFSFELLESISLDDCDEAVVAN 626

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +LRK+GI + +DDFGT  + +  L  +   T+K +  L+     + ++  ++ SII +
Sbjct: 627 LKKLRKLGIDIQIDDFGTGHASIVSLLRLSPKTLKIDRELIRMLPQSAEQRKLVGSIIDI 686

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++   +IA+ +     I+ L  + CD +Q   +A P+    I   ++ 
Sbjct: 687 GRSLNILVIAEGVETAEHIRILEELDCDTLQGYALARPMPAMQIPSFIRA 736



 Score =  117 bits (294), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 2/138 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHI 458
           +     R + A++GSG  VWD +   DR   +    TI G+A      G    WL  +H 
Sbjct: 32  LAERETRWNHALVGSGLGVWDHNYRLDRKYYSQTWKTIRGMAPDEEAAGEYDTWLQLVHP 91

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
           +DRD     +D           +E+R R  D  + W+  R   +  + NG   R +G   
Sbjct: 92  DDRDFVVHAIDRQNAGDPHYQIFEYRERHKDGHWVWIECRGACVEWDENGVPTRIVGTDT 151

Query: 518 DITEQKKSLEGILCNAFQ 535
           DIT +K++ E +   + +
Sbjct: 152 DITARKQAEETLSRLSRR 169


>gi|108803997|ref|YP_643934.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765240|gb|ABG04122.1| diguanylate cyclase/phosphodiesterase [Rubrobacter xylanophilus DSM
           9941]
          Length = 673

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/442 (28%), Positives = 219/442 (49%), Gaps = 12/442 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E     A  D+LTG+PNR  F +RL  IL  S         V+ +D+D +K +ND LG 
Sbjct: 214 EELFRHQALHDHLTGLPNRALFRERLGEILSRSGE-----AAVLFVDLDNFKVVNDSLGH 268

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +LV ++RR+   L+  D+ ARL G+ F ++L          + A  + + +  P 
Sbjct: 269 EVGDRLLVEVSRRLKGCLRATDMAARLGGDEFTVLLDG-AGVRCPEEVARRLLRELGEPF 327

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-- 703
            +    + V AS+G A+  +      ++L+ A++A+Y AK  G      F       +  
Sbjct: 328 EVEGHTLFVEASVGIATGAAGLGRPDDLLRAADVALYRAKAEGKGRYHVFDRRRDAPELE 387

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++ +L  AV + +L L Y P+  L    I G+EAL++W+HP+ G +   EF+ +AEE
Sbjct: 388 RLRLENELREAVRSGQLELYYQPVYSLELGRIAGMEALLRWNHPRRGTMLPGEFVPMAEE 447

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTL 822
             +I  +  ++LE   R   +W           + +N++ +   +  L E +  L+ +T 
Sbjct: 448 TGLIVPVGRWVLEEACRQARAWELGLPEGASPMVGVNLSLRQFQNPGLVEHVARLLRETG 507

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL-GYIPFDTV 881
             P+ + L  +ESV M + + +   L RL  +G+ L +DDFGT  S ++Y+      + +
Sbjct: 508 LDPALLTLEITESVAMHDVDSTVRTLERLNAMGVWLVIDDFGTGNSSIAYVGSRFKMNHL 567

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G+ +       +   IL  +I  A  +   +IA+ +     ++ L  +GC+++Q  +
Sbjct: 568 KLDGAFVREFLDDPENPTILPGLIDFAHAVGLRVIAEGVETRGQLERLRELGCEFVQGYY 627

Query: 940 VASPLGFNSILKLLKERFPLVK 961
           VA PLG      LL  R PL +
Sbjct: 628 VAPPLGAAEATDLLTGRKPLFR 649


>gi|300935386|ref|ZP_07150385.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300459416|gb|EFK22909.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 661

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 247/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   LK   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLKHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +  + +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESKKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|330901314|gb|EGH32733.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 426

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 116/419 (27%), Positives = 215/419 (51%), Gaps = 6/419 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR    DR++  L  +         ++V+D+D ++ IND LG  +GD+VL +
Sbjct: 1   YDALTELPNRLLLTDRISQALTSA-RSSRRGCALLVVDLDNFRNINDSLGHNIGDEVLKA 59

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
              R+  L      +ARL G+ F +++ +  + +  A  A  +  +   P  +   ++ V
Sbjct: 60  AAERLKALADSGMTVARLGGDEFALLVKNCTHMVHAAALAQQVINAFKAPYPIAGHQLFV 119

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
           +ASIG + +    +T+ ++L+NA+ A++ AK  G      +     +    RV +  +L 
Sbjct: 120 SASIGISLFPGDALTAEQLLRNADSALFKAKSDGREGFALYTEELTAHAQQRVQLASELR 179

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +L + Y P+  L+   I  +EAL++W HP  G +S  +F+ IAE+  +I  I+ 
Sbjct: 180 QAIEQDQLRVFYQPVYDLVTGRICAVEALVRWQHPTRGMVSPGDFIPIAEQNGLIADIDA 239

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R + +W  +       + +N++S+     ++   +  ++++T   P+ ++L  
Sbjct: 240 WVLNTACRQMQAWLAEGVSIA-SVAVNVSSRLFSRGDVDRRVAEVLNETGLDPAFLELEV 298

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES VM +PE++   L RLR++G+SL +DDFGT  S L  L  +P   +K +   + G  
Sbjct: 299 TESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLKSMPVQKLKIDQGFVAGLP 358

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                IAI+R++I +A ++   ++A+ I        L   GC+  Q    A P+   SI
Sbjct: 359 GDVDDIAIVRAVIALASSLGMRVLAEGIEHANQASFLLSNGCELGQGYWFARPMAAQSI 417


>gi|187923275|ref|YP_001894917.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
 gi|187714469|gb|ACD15693.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 565

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 130/552 (23%), Positives = 251/552 (45%), Gaps = 13/552 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   ++                 + GLA+  + G  R +       +    R  L 
Sbjct: 15  ALASAPYGMFTCTADGTFDCVNAAFEKLTGLAAEELIGR-RTFESLFDPAELAKRRAELP 73

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD---ILRYIGIANDITEQKKSL 526
           S +     R + E+     +     +++ + P+            Y+GIA D+T   +S 
Sbjct: 74  S-LAMVTSRYEGEWSFLRRNGTPVRVVLALAPLVTEPARTACPALYVGIAIDMTRYAQSE 132

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A  D +T +PN+  F +RL   +       +   TV++ ++D  +K+ D LG+ 
Sbjct: 133 ARLWYVAHHDGVTRLPNQTLFTERLELTIARCERSGSG-FTVLIAELDHLRKLRDALGLH 191

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             + VL  +  R+  L      +A + G +F  +L++E      A  A A+ + IA  I+
Sbjct: 192 AAELVLQIVGERLRGLFPNDGTIASIGGTQFA-LLVNETGPAADAFAAEALGR-IAEAID 249

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
                + +TASIG  ++ +    +  +++ A +A+  A    GN V  F        + R
Sbjct: 250 YAGTALNITASIGIVAYPADGGDAPTLMRRAGVALSAASAVNGNAVRRFSTALEGQAARR 309

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++  L  A++  +L+LVY P + L +  I  +EAL++W+HP+ G IS  EF+ +AEE 
Sbjct: 310 FELQTMLRDAIDRQQLHLVYQPQVTLSNGHIAQVEALLRWNHPQRGLISPVEFVPVAEEA 369

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I+ I  +++    RD           P F  +N++ +    + L E ++  +      
Sbjct: 370 GLIEQIGEWVIRTACRDAGKLLRLTGNLPRF-AVNVSPQQFQRHNLFETIREALEDAALD 428

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS +++  +E V++G+ E++   L  LR +G+ + +DDFGT  S L+YL   P + +K +
Sbjct: 429 PSYLEVEITEGVLLGDTEQALQTLFALRDLGVEVAVDDFGTGYSSLAYLTRFPLNRLKID 488

Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +   +      A++ +II MA  ++  + A+ +       +L  +GCD  Q    + 
Sbjct: 489 RSFVMRMSTDPQCAALVGAIIAMAHALKLRVTAEGVETAEQAAQLEALGCDEAQGFWFSR 548

Query: 943 PLGFNSILKLLK 954
           P+   ++  LL+
Sbjct: 549 PITVAALRNLLR 560


>gi|167625641|ref|YP_001675935.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355663|gb|ABZ78276.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
          Length = 784

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 211/443 (47%), Gaps = 9/443 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++K S   +   A  D LT + NR   + RL   +  +A +   +  ++ ID+D 
Sbjct: 329 HEEICKRKASESKLAYQATHDELTNLANRTHGMARLQEAI-RAAHEKQTQILLLFIDLDN 387

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND +G   GD +L   + R+   ++  DI+ARL G+ F +I+    +       A 
Sbjct: 388 FKQVNDTVGHHAGDLLLKQTSERLLTSVRRSDIVARLGGDEFLVIVPDIQHQDSAKLVAS 447

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           ++      P ++ ++E  V+ SIG + +      ++ +LK A+ A+Y  K  G N    +
Sbjct: 448 SILSVFEKPFHIEQQEFFVSTSIGMSIYPKDGRNAATLLKRADTALYKVKDLGRNGFSFY 507

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              ++        +   L  AV+  ++ + Y PI+ L   +IV  EAL++W   + G +S
Sbjct: 508 DESMNLDVQRNFALNVRLHQAVQQGDIEIYYQPILDLTSRKIVAAEALMRWTDSELGYVS 567

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCE 812
             +F+ +AE+  +I  +   +L        SW+      PI I IN +S       +L  
Sbjct: 568 PEDFIPLAEKNGLIHRLGDIVLLEACTQAASWQTI---SPIKIAINFSSVQFRYCEQLQS 624

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T     ++ +  +ES+++        +L  L+++G+ L++DDFGT  S LSY
Sbjct: 625 RIVDVLMQTGLPAYQLDMEVTESLLIDQGHALMKMLSYLKQLGVGLSIDDFGTGYSALSY 684

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L    F  +K + + +   T      +++ +I+ MAK+++  ++A+ I  E     L   
Sbjct: 685 LQRFSFTKLKIDRAFINNMTTCSSDASLVSAILAMAKSLKLKVVAEGIENEQQALFLQEH 744

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
            C+Y Q    + P+      +LL
Sbjct: 745 RCEYGQGYLFSRPVPAAEFTQLL 767


>gi|71738020|ref|YP_275817.1| sensory box protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558573|gb|AAZ37784.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320327557|gb|EFW83569.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 820

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 248/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +    +E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGDEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 793


>gi|88706235|ref|ZP_01103942.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88699629|gb|EAQ96741.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 654

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 214/443 (48%), Gaps = 13/443 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + K+ + I   A  D LTG+PNR+   DRL   L  +  + N +  +M +D+D +K++ND
Sbjct: 207 RSKAEDTIERQALFDELTGLPNRRLLQDRLGQALARAKRN-NTQAALMFLDLDFFKRVND 265

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636
            LG + GD++LV + RR+ + L+  D  ARL G+ F ++L       +     +      
Sbjct: 266 SLGHSAGDELLVEIGRRLSDFLREADTAARLGGDEFVLLLTDIEGGSEHVVSVVRRRGET 325

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +R+++  PIN+   E+ +T SIG +          ++LK+A+ AMY AK  G N +  F 
Sbjct: 326 LRQAVEAPINIKGNEVHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRNTLRFFV 385

Query: 697 VSSFRS--DRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                S   R+ ++  L  A++  E L L   P     +E I G E LI+W + +   + 
Sbjct: 386 PEMQASLSQRMDMERQLRGALDADEGLELYLQPQY-TDEEAICGAELLIRWQY-EGSFVP 443

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE+  +I  +  +++E   R     +D+       + IN++ +        E 
Sbjct: 444 PDVFIPVAEDSGLIYRLGDWVIENACRIGAGLKDELRDREFSLAINVSPRQFRQKNFSEK 503

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   + +       I+L  +E +++ + + +   +  LR+ G+  ++DDFGT  S L YL
Sbjct: 504 IFEAMERHELPRGLIELELTEGLLIEDVDDTVSKMLSLREQGVRFSIDDFGTGYSSLRYL 563

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K + S +    +     +I+R+I+ MA+ +E  +IA+ +  +     L    
Sbjct: 564 KSLPLDTLKVDQSFVRDVLTDPGDASIVRAIVSMARTLELEVIAEGVETKEVRDFLISAN 623

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C   Q    + PL  +    LL+
Sbjct: 624 CLRFQGYLYSRPLPLDDFKALLE 646


>gi|148553036|ref|YP_001260618.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
 gi|148498226|gb|ABQ66480.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
          Length = 594

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/493 (25%), Positives = 255/493 (51%), Gaps = 7/493 (1%)

Query: 468 LDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++ F+        ++  ++  D        +R+  +S     + R I    D T+Q +  
Sbjct: 103 IEDFLNGDESDRSFD--MQEGDGISGRHFAVRLSRLSGGESPVPRCILSLIDRTQQVEGE 160

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +     +D+LTG+PNR +F ++    +   A +   +  V++ID+ ++ ++N+ +G  
Sbjct: 161 RSLRTQMLRDSLTGLPNRAAFAEQAEHAMLNYAAEGR-QFAVLLIDLTRFSRVNEGVGSL 219

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD++++++ RR+   L+  D+LARL+G+ F ++L   ++  +    A  M+  +A PI 
Sbjct: 220 AGDELIITVARRLVSALRAGDVLARLAGDEFAVLLGVADDPSEAIAAARRMQACLATPIR 279

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           L + EI +  ++G A    +   + ++++NA++AM  AK  G   +     S     R  
Sbjct: 280 LGDLEIKIDCAVGVAMMAPAIDDAEDLIRNAQIAMKRAKQSGHAELYQAGDSVTARQRFS 339

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ +L  A+E  +L+L + P+I L    ++G EAL +WDHP+ G IS  +F+ +AEE  +
Sbjct: 340 LETELRRAIERDQLHLAFQPLIELSTGRVIGFEALARWDHPEKGAISPVDFIPVAEESGL 399

Query: 767 IKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           I A+  + L    R +  W R      P+ + +N+++     +++   ++A ++++  + 
Sbjct: 400 IVALGRWALRAATRTLAEWDRRAGAPLPVHMAVNVSAVQFQRDDVVSAIKAALTESGIAG 459

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           SR+K+  +ES ++ +P+    +L  +  + +++ +DDFGT  S L+YL  +P D +K + 
Sbjct: 460 SRLKIELTESCIVTDPDGIARVLRAIHGLDVTIAMDDFGTGYSSLTYLQRLPIDVLKIDR 519

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +         +AI+R+I+ +A  +     A+ +  E  I+ L  +GCD  Q  + A P
Sbjct: 520 SFVAPMLHDRDSVAIVRAILGLASALGMATTAEGVESEALIETLIGLGCDIAQGYYFARP 579

Query: 944 LGFNSILKLLKER 956
           L  +     L+ R
Sbjct: 580 LPSDEAFAYLRSR 592


>gi|71279662|ref|YP_268474.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71145402|gb|AAZ25875.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 719

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 132/554 (23%), Positives = 242/554 (43%), Gaps = 15/554 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  + + +   D  +      P    + G     +HG     L       +  ++T+  
Sbjct: 167 IIANTHEAIMVCDKDKFITYINPSFTRMTGYTQADLHGKTPKILNS-GKQTKAFYQTMWA 225

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                + G  Q E   +  +   +   + I  + + + ++  Y    +DITEQ  + E I
Sbjct: 226 DI--NKNGHWQGEIWNKCKNGSEYLEWLSITAIVDESNELTHYTAFFSDITEQYIAKEKI 283

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDL--SATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                 D+LT   N+++    +   +    +  +      ++VIDID + K N +   A 
Sbjct: 284 KFQDSYDDLTKTANKKTLFTFIERSIIQYSNQLECTTPAALLVIDIDFFNKFNSLYSHAF 343

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+VL+ ++ R+  L++  DI+AR SG+ F + +    N   I  F   +  +   P  +
Sbjct: 344 GDEVLMQVSSRLQSLIRSSDIVARTSGDNFALFINHITNQDSIVYFIDKVTHAFLKPFVI 403

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
               I +T SIG A +         + + AE AM+ AK  G N  E +    S   +   
Sbjct: 404 EGINIKITLSIGVACFRQDTQDVHRLFEKAEQAMFAAKDNGRNSYEFYSQLLSDKANKEE 463

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +K  L  A+EN++  +VY PI+ L ++ +   E LI+W+      +S  +F+  AE+  
Sbjct: 464 QLKLSLESAIENNDFCVVYQPIVSLKNKSVTKFEVLIRWNM-HGKWVSPVDFIPTAEKFG 522

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM--QALISKTLY 823
           +I  I   +L     ++   R       I   +N +  +         +     I K   
Sbjct: 523 LISKIGDLVLNLACTELCKLRKM-GFSDIVFNVNRSIYEFSSG--VNDISWLDTIKKYDL 579

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P  I    +ESV+    +R   LL +L+  G ++ LDDFGT  S L+YL   P DT+K 
Sbjct: 580 NPESICFELTESVLAPENDRCITLLNKLQSAGCTIALDDFGTGYSSLNYLRRFPIDTLKI 639

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   ++  T  E    ++ +II MAK +  +++A+ +  + ++  L  +GCDYIQ  + +
Sbjct: 640 DRGFISEMTKVEGDKVLVSAIISMAKALGISVVAEGVELKQEVDILVSLGCDYIQGYYFS 699

Query: 942 SPLGFNSILKLLKE 955
            PL    + + L +
Sbjct: 700 KPLAPELLSQYLTD 713


>gi|323187519|gb|EFZ72828.1| protein gmr [Escherichia coli RN587/1]
          Length = 661

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/575 (21%), Positives = 249/575 (43%), Gaps = 20/575 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + G +  Q    A P+   +  +  K     +K T
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRY---LKRT 661


>gi|193067090|ref|ZP_03048059.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E110019]
 gi|192959680|gb|EDV90114.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E110019]
          Length = 661

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVIRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|312971478|ref|ZP_07785653.1| protein gmr [Escherichia coli 1827-70]
 gi|310336075|gb|EFQ01275.1| protein gmr [Escherichia coli 1827-70]
          Length = 639

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 81  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 134

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 135 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 194

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 195 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHA---DNNKVGVVYLD 251

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 252 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 310

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 311 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 370

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 371 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 429

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 430 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 487

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 488 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 547

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 548 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 607

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 608 KNGINERQGFLFAKPMPAVAFERWYKRYL 636


>gi|315297203|gb|EFU56483.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADKTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|218689278|ref|YP_002397490.1| RNase II stability modulator [Escherichia coli ED1a]
 gi|218426842|emb|CAR07694.2| modulator of Rnase II stability [Escherichia coli ED1a]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 249/576 (43%), Gaps = 16/576 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
            T   ++ +          V  +   +   D   +            GL    + G   +
Sbjct: 98  DTSAVARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--S 155

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                            +          + E  +     Q  ++       S S  + + 
Sbjct: 156 VFKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIF 215

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +
Sbjct: 216 LICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYL 272

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   + 
Sbjct: 273 DLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALE 331

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G   
Sbjct: 332 ALASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQ 391

Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ 
Sbjct: 392 FCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPER 450

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  
Sbjct: 451 GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQT 508

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           +   ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S 
Sbjct: 509 IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSS 568

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   L
Sbjct: 569 LSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFL 628

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           T+ G +  Q    A P+   +  +  K     +K T
Sbjct: 629 TKNGINERQGFLFAKPMPAVAFERWYKRY---LKRT 661


>gi|281178479|dbj|BAI54809.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|167562036|ref|ZP_02354952.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia oklahomensis EO147]
 gi|167569294|ref|ZP_02362168.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia oklahomensis C6786]
          Length = 786

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 329 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 386

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  ++   +    A A+ +  A P 
Sbjct: 387 NAGDIVLQMTAARLSDAVMNEGALARIGGDEFVVVVKGDDVERRAERLAEAIVRMFAEPF 446

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 447 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 506

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 507 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 566

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR + +   + + +NI+       +L + +   + +T  
Sbjct: 567 TGLIVPIGDFVIRTACEQLARWRSEGHD-KLTLAVNISPVQFWRGDLIDTISRALVETGV 625

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 626 EARRLELEITETAMMEYPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKV 685

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  LT +G    Q    +
Sbjct: 686 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLTALGRIEAQGFLFS 745

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 746 RPVPADGIPALLAR 759


>gi|26247620|ref|NP_753660.1| RNase II stability modulator [Escherichia coli CFT073]
 gi|227886279|ref|ZP_04004084.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 83972]
 gi|300971702|ref|ZP_07171575.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|26108022|gb|AAN80222.1|AE016760_81 Hypothetical protein yciR [Escherichia coli CFT073]
 gi|222033092|emb|CAP75832.1| Uncharacterized protein yciR [Escherichia coli LF82]
 gi|227836483|gb|EEJ46949.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 83972]
 gi|300411188|gb|EFJ94726.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|307553349|gb|ADN46124.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli ABU 83972]
 gi|312945923|gb|ADR26750.1| RNase II stability modulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315295305|gb|EFU54635.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|170681077|ref|YP_001743896.1| RNase II stability modulator [Escherichia coli SMS-3-5]
 gi|218699998|ref|YP_002407627.1| RNase II stability modulator [Escherichia coli IAI39]
 gi|218704813|ref|YP_002412332.1| RNase II stability modulator [Escherichia coli UMN026]
 gi|293404828|ref|ZP_06648820.1| RNase II stability modulator [Escherichia coli FVEC1412]
 gi|293409680|ref|ZP_06653256.1| gmr [Escherichia coli B354]
 gi|298380470|ref|ZP_06990069.1| gmr [Escherichia coli FVEC1302]
 gi|300897346|ref|ZP_07115776.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|331662701|ref|ZP_08363624.1| protein gmr [Escherichia coli TA143]
 gi|331672815|ref|ZP_08373601.1| protein gmr [Escherichia coli TA280]
 gi|170518795|gb|ACB16973.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli SMS-3-5]
 gi|218369984|emb|CAR17758.1| modulator of Rnase II stability [Escherichia coli IAI39]
 gi|218431910|emb|CAR12795.1| modulator of Rnase II stability [Escherichia coli UMN026]
 gi|284921168|emb|CBG34234.1| putative signal transduction protein [Escherichia coli 042]
 gi|291427036|gb|EFF00063.1| RNase II stability modulator [Escherichia coli FVEC1412]
 gi|291470148|gb|EFF12632.1| gmr [Escherichia coli B354]
 gi|298277912|gb|EFI19426.1| gmr [Escherichia coli FVEC1302]
 gi|300358896|gb|EFJ74766.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|331061123|gb|EGI33087.1| protein gmr [Escherichia coli TA143]
 gi|331070036|gb|EGI41405.1| protein gmr [Escherichia coli TA280]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 247/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +  + +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESKKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|148259506|ref|YP_001233633.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146401187|gb|ABQ29714.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Acidiphilium cryptum JF-5]
          Length = 742

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/453 (25%), Positives = 207/453 (45%), Gaps = 15/453 (3%)

Query: 509 ILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  ++ +    + + ++ E  I   AF D LTG+PNR  F +   +     A        
Sbjct: 283 VAGFLAVVRSRSLRLQASEVRIHHLAFHDPLTGLPNRTFFNE---SADAALAALSGTSIA 339

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K++ND LG   GD ++     R+  L++  D++AR+ G+ F ++L      
Sbjct: 340 LLFLDLDRFKQVNDTLGHPAGDTLIREFGARLRALVREEDMVARVGGDEFTVMLAGVAGR 399

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      + +S+  P +L    + V  SIG A          ++L+ A++A+Y AK  
Sbjct: 400 EDVEKLCARIVESVRTPFDLNGNRVFVGLSIGVALAPDHGTDRIDLLRKADIALYSAKST 459

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G      F   +      R  I+ DL  A  E+ E+   Y PI       I G EAL++W
Sbjct: 460 GRGRFAFFDPVMDDALRLRREIEADLRAALQESGEIVPYYQPIHAAAGHTITGFEALLRW 519

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G IS   F+ IAEE  +I+ +   +L       ++W      P   I +N +  +
Sbjct: 520 RHPALGWISPDLFIPIAEEAGLIEMMGERVLREACTAAVNW------PNRTIAVNASGPE 573

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +    E + A++  T   P R+++  +E+   G    +   L  LR +G+ + +DDFG
Sbjct: 574 LANPGYAERVAAILRVTGLPPQRLEIEITETAANGQIGTAAENLASLRAMGVRIAIDDFG 633

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+ L  +  D VK + S +   G  +    I+R+II +A      + A+ +    
Sbjct: 634 TGFSSLARLQQLRVDRVKIDRSFIHGFGDQDSDEVIVRAIIELAHARGLRVTAEGVETLE 693

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L R+GCD +Q    +       I +L++ 
Sbjct: 694 QREGLARIGCDDLQGFIFSKARPAPEIDRLVEA 726


>gi|114047701|ref|YP_738251.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113889143|gb|ABI43194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 752

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 130/684 (19%), Positives = 266/684 (38%), Gaps = 32/684 (4%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +L   + + P               +       Y G +     +   P W L   + +  
Sbjct: 72  LLTGAAPHLPDSYNQAIHGVEIGPEVGSCGTAAYTGERVIVEDIEHHPYWALYQSFALAH 131

Query: 355 WMAITKRLDNDIIQPALVGGLVL------IVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
            +           Q  ++G   +             T+I         +       E Q 
Sbjct: 132 GLRACWSEPIKDSQGKVLGTFAMYYEEVKSPTTADLTLIAEAARLASLAIERSRSLEFQR 191

Query: 409 LAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNF 464
           LAV         +   +     +        ++      ++     N+      ++    
Sbjct: 192 LAVKIFDRLPLSLVITNASYSVLYANDAFKLMVSHQYSDLNSFCPENFFS---PSEPHEI 248

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            ++       +    Q E      + +  ++ + +     S+ +   +  + +DI+E+KK
Sbjct: 249 DSLFQHLSEGK--MWQGELIGLRNNGETFYLDLTVTVFRESHSNENGFAWLFSDISERKK 306

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + I   A  D+LTG+ NR +   ++  ++   +       + M++D+D +K++ND  G
Sbjct: 307 AAQLIKYQANNDSLTGLANRNALFRQIQELISADSLTPG--FSFMLMDLDNFKQVNDTYG 364

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +LV +  +I   L    + +RL G+ F ++L       +++  A  + + +   
Sbjct: 365 HDKGDALLVQVVEQIKTCLNDQAVFSRLGGDEFALLLPGIVTQRELSQLAEKINQQVYRR 424

Query: 645 INLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             L  ++ +  + SIG A +    +   ++L  A+ AMY +K  G N    F      + 
Sbjct: 425 YELSLDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQLNA 484

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A+E     L + PI+      ++  E L++W H +   IS  EF+ IA
Sbjct: 485 ERTANLHTLLKQALEQEAFELYFQPIVDATTGLVLRAEVLLRWQH-EGQFISPDEFIPIA 543

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL----LDNELCEGMQAL 817
           E   +I  I  ++ + + + II  +      PI + +N+++ +     L +E C+    +
Sbjct: 544 ENSGLIVNIGRYVRKAVMQTIIDMQALGW--PINLAVNVSTFEFWSHELQDEFCDSFADI 601

Query: 818 ISKTLY---SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           I +          I L  +ES++M        +L  LR  GI ++LDDFGT  S LSYL 
Sbjct: 602 IEELGLIEFPYELITLEITESLLMKQHVHLIKVLNELRGRGIKISLDDFGTGYSSLSYLA 661

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + S +    E     A++ +I+ ++  +  ++ A+ +  +  +K +     
Sbjct: 662 NFPIDQIKIDKSFIDRLDEGERHLALVEAIVRLSHALNLSVTAEGVETQTQLKVMMENHI 721

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             IQ      P+   +  +LL E+
Sbjct: 722 QEIQGYIFYKPMPKAAFFELLAEQ 745


>gi|260854984|ref|YP_003228875.1| modulator of Rnase II stability [Escherichia coli O26:H11 str.
           11368]
 gi|257753633|dbj|BAI25135.1| modulator of Rnase II stability [Escherichia coli O26:H11 str.
           11368]
 gi|323153280|gb|EFZ39538.1| protein gmr [Escherichia coli EPECa14]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WR++     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWREKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|197335582|ref|YP_002155761.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197317072|gb|ACH66519.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 827

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 218/439 (49%), Gaps = 6/439 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I ND    +K+   +   A  D LT +PNR     R+   +  +     +   +M +D+D
Sbjct: 386 ICNDFEVLEKTKNKMQYMALHDGLTQLPNRVMLESRIEEEIVKAQQSGKM-IALMFVDLD 444

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND  G  VGD +L  ++ R    ++  +++AR  G+ F     +  +      + 
Sbjct: 445 DFKKVNDHYGHDVGDRLLTLISSRFSHFIEKDEMVARFGGDEFVFCFSNLTSQQDAELWV 504

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
             ++       ++  +EIT   SIG A +      SSE++  A++ +Y +K  H+G +  
Sbjct: 505 EKIQSVFEDVFSINGKEITTGCSIGVAMYPKDATCSSELISKADIVLYKSKDVHKGASLF 564

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +    S    ++E+L  A++  E+ LVY P I      I G+E L +W + K G++
Sbjct: 565 FDKSIDEQVSYEFSLEEELKSALDKREVTLVYQPQIDTKTGGIYGVEVLSRWCNDKLGSV 624

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ +AEE+ MI  +  F+L++   DI           I + +NI+ K L+      
Sbjct: 625 SPVQFIAVAEEIGMIDQLGDFVLQQACEDIQVVMP-NGTNAIMLSVNISPKQLIRKGFVS 683

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++S+T    SRI    +E++++ + +    +L  L+K+G  ++LDDFGT  S LSY
Sbjct: 684 RIMKIVSRTGIDVSRITFEITENILISDLKSVSPILLELQKLGFGISLDDFGTGYSSLSY 743

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S ++     ++  +++++II +  + + T++A+ +  +  +++L   
Sbjct: 744 LNILPITEIKIDRSFVSSLFTNDQSESLIKAIIAIGASCQMTVVAEGVETKEQLEKLKEY 803

Query: 931 GCDYIQDSHVASPLGFNSI 949
            CD +Q  ++  PL  + +
Sbjct: 804 QCDLVQGYYLDKPLSISEL 822


>gi|16129246|ref|NP_415801.1| cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase
           II stability [Escherichia coli str. K-12 substr. MG1655]
 gi|89108131|ref|AP_001911.1| modulator of Rnase II stability [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155383|ref|YP_001462586.1| RNase II stability modulator [Escherichia coli E24377A]
 gi|170080964|ref|YP_001730284.1| modulator of RNase II stability [Escherichia coli str. K-12 substr.
           DH10B]
 gi|191165004|ref|ZP_03026848.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B7A]
 gi|193062659|ref|ZP_03043753.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E22]
 gi|194425923|ref|ZP_03058479.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B171]
 gi|209918528|ref|YP_002292612.1| RNase II stability modulator [Escherichia coli SE11]
 gi|238900521|ref|YP_002926317.1| modulator of Rnase II stability [Escherichia coli BW2952]
 gi|256023003|ref|ZP_05436868.1| RNase II stability modulator [Escherichia sp. 4_1_40B]
 gi|260843634|ref|YP_003221412.1| modulator of Rnase II stability [Escherichia coli O103:H2 str.
           12009]
 gi|300822548|ref|ZP_07102687.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300904935|ref|ZP_07122753.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300948364|ref|ZP_07162470.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300954535|ref|ZP_07166981.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301022760|ref|ZP_07186604.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|301304370|ref|ZP_07210483.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|301647217|ref|ZP_07247036.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|307309959|ref|ZP_07589609.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|309793239|ref|ZP_07687666.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|331667674|ref|ZP_08368538.1| protein gmr [Escherichia coli TA271]
 gi|2495597|sp|P77334|GMR_ECOLI RecName: Full=Cyclic di-GMP phosphodiesterase Gmr
 gi|1742099|dbj|BAA14839.1| modulator of Rnase II stability [Escherichia coli str. K12 substr.
           W3110]
 gi|1787541|gb|AAC74367.1| cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase
           II stability [Escherichia coli str. K-12 substr. MG1655]
 gi|157077413|gb|ABV17121.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E24377A]
 gi|169888799|gb|ACB02506.1| modulator of Rnase II stability [Escherichia coli str. K-12 substr.
           DH10B]
 gi|190904776|gb|EDV64481.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B7A]
 gi|192931781|gb|EDV84381.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli E22]
 gi|194415978|gb|EDX32244.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli B171]
 gi|209911787|dbj|BAG76861.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|238861791|gb|ACR63789.1| modulator of Rnase II stability [Escherichia coli BW2952]
 gi|257758781|dbj|BAI30278.1| modulator of Rnase II stability [Escherichia coli O103:H2 str.
           12009]
 gi|260449582|gb|ACX40004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli DH1]
 gi|299881109|gb|EFI89320.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|300318445|gb|EFJ68229.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300403084|gb|EFJ86622.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300452125|gb|EFK15745.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300524964|gb|EFK46033.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300840357|gb|EFK68117.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|301074579|gb|EFK89385.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|306909677|gb|EFN40171.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|308122826|gb|EFO60088.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|309701585|emb|CBJ00892.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|315060539|gb|ADT74866.1| modulator of Rnase II stability [Escherichia coli W]
 gi|315254326|gb|EFU34294.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
 gi|323378899|gb|ADX51167.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli KO11]
 gi|323937610|gb|EGB33878.1| AL domain-containing protein [Escherichia coli E1520]
 gi|323942403|gb|EGB38573.1| EAL domain-containing protein [Escherichia coli E482]
 gi|323947431|gb|EGB43435.1| AL domain-containing protein [Escherichia coli H120]
 gi|324018897|gb|EGB88116.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|331065259|gb|EGI37154.1| protein gmr [Escherichia coli TA271]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|257485858|ref|ZP_05639899.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331012944|gb|EGH93000.1| sensory box protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 820

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 127/595 (21%), Positives = 248/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+ N  G +   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQERQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCRA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +A
Sbjct: 499 GLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +    +E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEGDEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   +A P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLIARP 793


>gi|332524599|ref|ZP_08400802.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107911|gb|EGJ09135.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 714

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 211/449 (46%), Gaps = 11/449 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-----SATDDNLRPTVMVIDIDKYKK 578
            + + +   A +D LTG+PNR  F DRL   L       +      R  V+  ++D +K 
Sbjct: 259 AAQDTLRRKALEDPLTGLPNRVLFEDRLQHALARVSRDAAPRRRGERLAVLFANVDGFKP 318

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G   GD VL  + RR+  + +  D  ARL  + F  ++ + +        A  + 
Sbjct: 319 VNDSFGHEAGDAVLREIGRRLRGVKRDADTFARLGADEFVAMVEARDAEAAAVALAQRVV 378

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
                P  L  + ++++ S+G A +     +   +L  A  AM  AK  GG     +   
Sbjct: 379 DGFRPPFTLGGQPVSLSCSVGIALYPDHDDSGQRLLGCANAAMDAAKRAGGGCFTVYESA 438

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +S   S+++++++ L  A+E  EL L Y P IR     + GLEAL++W HP+ G +S + 
Sbjct: 439 MSGDASEQLVLQQALRRAIELGELALFYQPKIRANGAAVHGLEALLRWHHPERGLVSPAV 498

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  I  ++LE     +  W+ Q +     + IN++   L   +L E +  
Sbjct: 499 FVPLAERFGLIGTIGHWVLEAACAQLAQWQAQGH--ACRVAINLSPHQLRQTDLPERIAQ 556

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +    PS +    +E+ +M N    R +L  +  +G+ +++DDFGT  S L++L  I
Sbjct: 557 ALQRHGLQPSSLVCEITETAMMENLGPERGVLDAIAALGVYVSIDDFGTGYSSLAHLRNI 616

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          A+L SI+ +A  +   ++A+ +      + L RMGCD 
Sbjct: 617 PARQLKIDRSFVADLEQDADARAVLGSIVQLAHALRMEVVAEGVETAAQRRLLARMGCDL 676

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +Q   +A P+   ++L  +      V+  
Sbjct: 677 LQGYLIARPMPAEAVLPWITAFEQGVRAA 705


>gi|330504565|ref|YP_004381434.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328918851|gb|AEB59682.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 684

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 220/454 (48%), Gaps = 6/454 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   ++++   +L  A  D LTG+PNRQ    +L  IL+ +      R  V+ + +
Sbjct: 231 SIERNTHLRREAENSLLRMAQYDFLTGLPNRQQLQQQLDQILEDAGRLQR-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L++L+ R+         LARL G++F ++        + A+ 
Sbjct: 290 DDFKGINEQFSYQSGDQLLLALSDRLRSHSGRLGALARLGGDQFALVQADIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P  L + E+ + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSVLDDLELPFMLDQHEVRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKSRSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++L+LVY P +   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLRDALAQNQLHLVYQPQVDYRDHRVVGVEALLRWQHPQHGF 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++   F+ +AE+   I  I  ++L++  R +  W DQ     + + IN+++  L  +EL 
Sbjct: 470 VAPDLFIPLAEQNGTIIPIGEWILDQTCRQLREWHDQ-GFSDLRMAINLSTVQLHHSELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLMQVYRLPPKSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      E    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLEDEDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            GC   Q    + PL    +   LK+   L    
Sbjct: 649 QGCHEGQGYLYSKPLPARELTLFLKQARRLSSAA 682


>gi|170692754|ref|ZP_02883916.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142410|gb|EDT10576.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 692

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 199/434 (45%), Gaps = 7/434 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I+  A  D LTG+PNR +  +R+   +  +A        ++ +D+D +K IND LG + 
Sbjct: 254 QIVRLATLDTLTGLPNRATLTERIERAI-YAARRQRSLFAILFMDLDGFKTINDSLGHSA 312

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL +  +R+   ++  D +ARL G+ F ++  +  +    A  A  + + +      
Sbjct: 313 GDQVLSAFAQRLLVCVRAGDTVARLGGDEFVVLSENLASRDDAATLAEGVLERMRHDTWT 372

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
             + + V  SIG A +     T   +LK+A+ AMY AK  G +    F  S        +
Sbjct: 373 DSQPLQVMPSIGIALFPEDGDTVDTLLKHADAAMYEAKRAGRSTYRFFERSMNEAAMRTL 432

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I+  L  A+      L + P      E + G EALI+   P+ G ++  EF+ IAE   
Sbjct: 433 QIQNALRDALAEHHFTLHFQPKFDGSSESLAGAEALIRLHDPQLGTLAPLEFIPIAERSG 492

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  ++L    R I  W  Q   PPI + IN++ + LL  +L   M  ++       
Sbjct: 493 QIVQIGYWVLREACRQIRRWIAQGL-PPIKVAINLSPRQLLQADLVPTMLEIVKTEGVKC 551

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +I    +E+V M +  R+  +L   +  G  + +DDFGT  S L+YL       +K + 
Sbjct: 552 DQIMFEITETVAMQDAPRTIDMLREFQASGFEIAIDDFGTGYSSLAYLQRFRVKQLKIDR 611

Query: 886 SLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
               G      +  AI+ +II +A ++E  ++A+ +  E  +  L  M CD +Q   +  
Sbjct: 612 FFTNGLDAHGPEGSAIVSAIIALAHSLEMDVVAEGVETESQMHMLKAMRCDEMQGFLLGK 671

Query: 943 PLGFNSILKLLKER 956
           PL   +   LL+ R
Sbjct: 672 PLTGEAFGDLLRGR 685


>gi|324117520|gb|EGC11426.1| EAL domain-containing protein [Escherichia coli E1167]
          Length = 661

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVERWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|238028235|ref|YP_002912466.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
 gi|237877429|gb|ACR29762.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
          Length = 789

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 115/434 (26%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   +  +      R  ++ ID+D +K +ND LG 
Sbjct: 326 EREMTHLAEYDLLTGLANRYTTLRALRNEV--AQPSSLKRLAILFIDLDNFKTVNDTLGH 383

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  +    +    A ++ +    P 
Sbjct: 384 NAGDIVLQMTAARLSDAVADQGTLARIGGDEFVVVVKGDGAEARAVRLAESVIRMFGKPF 443

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 444 DVRGSTFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 503

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++WDHP+ G I++SEF+ IAE 
Sbjct: 504 LMRWEQQLRVALAEGKLFLAYQPKIDLARRCITGFEALVRWDHPEHGVIAASEFISIAES 563

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  +++    + +  W+++ +   + + +N++       +L E +   + +T  
Sbjct: 564 TGLIVPIGDYVVRTACQQLARWQEEGHDT-LTLAVNVSPVQFWRGDLIETISNALGETRI 622

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             SR+++  +E+ +M  P+     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 623 DASRLEIEITETAMMEYPDLVSDKIVALKKLGIRIALDDFGTGYSSLSYLHRFAVDTLKV 682

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+ +  T++ +    +  +  L+ +G    Q    +
Sbjct: 683 DRSFVQAIPADRSVCVMVSSIVHLARALGLTVVVEGTETDEQVDWLSALGPIQAQGFLFS 742

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  LL  
Sbjct: 743 RPVPADAIPALLAR 756


>gi|188991547|ref|YP_001903557.1| Putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167733307|emb|CAP51506.1| Putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. campestris]
          Length = 760

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 223/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 322 EREQIRQRVHQLAFYDALTGLPNRIMFSARAEQALTHA-EYAGEPAALMFINIDRFKLIN 380

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RIGE L    +LARL+G+ F + L    ++ + +  A  +  +
Sbjct: 381 DSQGHAAGDGLLRDIALRIGEQLTATAMLARLAGDEFALALPQC-SAEQASATAERLLGT 439

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 440 IAGPLPVGHMTVHPSASIGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSADMN 499

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPII-RLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+  ++L L Y P +       + G+EAL++W+HP+ G +S + F
Sbjct: 500 RMAQERVALEAELRQAIGRNQLQLHYQPQLLSQAPHALYGVEALLRWNHPQLGAVSPARF 559

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R    +  WR Q  +P   + +N+++       +   +  L
Sbjct: 560 LPVAEEQGMMPQLNDWVLRRACEQVADWR-QRGVPVARVSVNLSASSFESPRMLTDLLRL 618

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I      PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 619 IDDMGVQPSDLTLEMTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 678

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 679 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLLLADLGCEVL 738

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 739 QGYLFSRPLPAAALEAWLGAQ 759



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN--DRDN 463
            + A+ GS   +   D+    +        + G     + G    + L     +  +   
Sbjct: 48  LAQALDGSSSAILICDLQSRLLYANDGFERMFGYTEAELVGQRPSHVLTRALSDQTEVAR 107

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R   D+    +   L     V   D    W+ +   P+ ++  +   Y+ +  DITE K
Sbjct: 108 IRERADALQQTQADLL-----VYRKDGTPLWISLNFNPIYDAQHNPSHYVAVLTDITETK 162

Query: 524 KSL 526
              
Sbjct: 163 MHE 165


>gi|39933598|ref|NP_945874.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39647444|emb|CAE25965.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 569

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 228/472 (48%), Gaps = 18/472 (3%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             ++ +W+ I   P    +G ++     A DI+E+ +        A  D LT + NR  F
Sbjct: 99  PGDRIYWVDITSFP----DGWLI----SAADISERLRQGIVGAELARTDRLTQLANRLVF 150

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL  +L     D      V+ ID+D++K IND LG  +GD +L  + +RI   L   D
Sbjct: 151 HERLADLLAQ-PADVRRDAAVLTIDLDRFKAINDSLGRNIGDALLCLVAKRISSALTPSD 209

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           +LAR+  + FG+I +  +        A  +   ++ P  L  + I V+A +G A     +
Sbjct: 210 VLARIEADEFGVIQVGRDQPDAAVILAKRLVDLLSRPYLLEGQLINVSAFVGIALPIDDE 269

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYH 725
           +    +LKNA+LA++ AK         F  +   S R    ++ DL  A+   E  LVY 
Sbjct: 270 LDVDGVLKNADLALHRAKQERYAGYRVFESAMDESMRARRALETDLRRALALREFSLVYQ 329

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    + G EAL++W  P+ G +S  +F+ IAEE  +I  I  ++L    RD  SW
Sbjct: 330 PQVNLQSRRVAGFEALLRWRCPRRGPVSPLDFIPIAEETGIIGPIGEWVLRTACRDAASW 389

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                     + +NI++    +  L   + + I+ +   P R++L  +ESV++     + 
Sbjct: 390 P-----GDYTVAVNISAIQFTNRSLVATVVSAIADSGLDPRRLELEITESVMLDARGNAL 444

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSII 903
            +L +LR +G+ ++LDDFGT  S L YL   PFD +K + S +  +++ R   AI+R+I 
Sbjct: 445 AVLQQLRGLGVRVSLDDFGTGYSSLGYLRSFPFDKIKIDQSFVREASDDRGNRAIVRAIA 504

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  ++    +A+ +  E  +  +   GC  +Q   ++ P+    I   L E
Sbjct: 505 SLGASLGMATVAEGVETEDQLARVAADGCTDVQGYLISRPIPPGEIEHFLAE 556


>gi|118589729|ref|ZP_01547134.1| hypothetical protein SIAM614_04795 [Stappia aggregata IAM 12614]
 gi|118437815|gb|EAV44451.1| hypothetical protein SIAM614_04795 [Stappia aggregata IAM 12614]
          Length = 891

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/608 (20%), Positives = 247/608 (40%), Gaps = 39/608 (6%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           + I   +      H+         +    +R  LA+  S   +W+ ++    +T    + 
Sbjct: 290 IFIAGQLYDQRRGHIRELKRRQLQMEGLSQRLKLALDTSKIGIWELNLDTGVLTWDSRML 349

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +  +  G        W   +H +D +         +    G    +FRV   D    W+
Sbjct: 350 ELYDIPEGRDTTQYDVWADCLHPDDLERAEREYWEAIEA-GGTYHSDFRVILQDGSIRWI 408

Query: 496 IIRIRPMSNSNGDILRYIGIANDIT---------------------EQKKSLEGILCNAF 534
                  +N+ G     +G+  D++                     E + +   +   + 
Sbjct: 409 RAIGAVHTNTRGQ-RYILGVNWDVSSDIQLKTRLLTAKQSAEDRNRELEDARALMEHYSL 467

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+PNR+     L     L          ++ ID+D++K IND LG A GD +L  
Sbjct: 468 HDSLTGLPNRRFLDQEL-----LDEEAPQRPTALLHIDLDRFKHINDTLGHAAGDAMLTH 522

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               + E +   D +AR+ G+ F I +    +   +A  A  +   +  P+     +   
Sbjct: 523 AASVLKENVSDSDFVARIGGDEFVIAITEPADEASLAARADRIIAQMRRPVPFENHQCRF 582

Query: 655 TASIGFASWTSSKITS-SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDL 711
             SIG A   ++       +L +A++A+Y AK  G N  E F     S       + +D+
Sbjct: 583 GVSIGIAMADTTLSDYGRHLLVDADIALYRAKSNGRNRFEFFSDTLKSEIVHNKQVADDI 642

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  E    + P        I G+EAL +W HP  G ++   F+  A+EL ++  I+
Sbjct: 643 LFALERQEFLPYFQPQFDARTLAITGVEALARWKHPTEGILTPDRFLKTADELNVVHLID 702

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +LE+       W+      P  + +N+++  L D +L + +  L+    + P  +   
Sbjct: 703 RLILEQTLWQSARWKAAGIHIP-KMSVNVSAGRLNDVQLVQSLDGLV----FEPGSLSFE 757

Query: 832 FSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             ES+ +    +        LR++GI + +DDFGT  + +  L ++    +K +  L+  
Sbjct: 758 LLESIFLDEKNDLIAANFDHLREMGIDIEIDDFGTGYASIVSLIHLRPKRLKIDRQLVIP 817

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +E +  ++ SII + +++   ++A+ +      + L  +GCD +Q    A  +  + 
Sbjct: 818 ITHSEGQRRLVASIIDIGQSLGIKVVAEGVETMQHARILRDLGCDALQGYAFAPAMPSDR 877

Query: 949 ILKLLKER 956
           +++ ++E 
Sbjct: 878 LMEFVREE 885


>gi|306813688|ref|ZP_07447869.1| RNase II stability modulator [Escherichia coli NC101]
 gi|331657338|ref|ZP_08358300.1| protein gmr [Escherichia coli TA206]
 gi|305852962|gb|EFM53407.1| RNase II stability modulator [Escherichia coli NC101]
 gi|331055586|gb|EGI27595.1| protein gmr [Escherichia coli TA206]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|323953840|gb|EGB49641.1| EAL domain-containing protein [Escherichia coli H263]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/575 (21%), Positives = 249/575 (43%), Gaps = 20/575 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILPRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + G +  Q    A P+   +  +  K     +K T
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRY---LKRT 661


>gi|166711822|ref|ZP_02243029.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 705

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 227/464 (48%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L+ + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLNTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
                +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTGSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGDDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+    RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLAERLVHELSRPLKAQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVRMEHELRGAWERDELLLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPTLGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--LVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFVSVNVSPRQLRSGDLIDTVAECLAESGLPAARLHLELTETAVIGDEMMAARLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPADMVKLIAA 704


>gi|209516129|ref|ZP_03264988.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209503413|gb|EEA03410.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 787

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 209/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L   +         R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEYDLLTGLRNRYATLQALRHDVAQPVNLG--RLAILFIDLDNFKAVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  ++   +    A A  K+ + P 
Sbjct: 386 NAGDIVLQMTASRLSAAVGDGGALSRIGGDEFVVVIKGDDVEKRAVTLAEAAGKAFSKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A ++ +     ++LK A+LAMY AK  G N  + +          
Sbjct: 446 EVRGSSFVLHASIGIALYSVANENEIDLLKKADLAMYSAKDAGKNCYQFYSPHLAHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A++  +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALDEGQLFLAYQPKIDLTRRCITGFEALLRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 566 TGLIVPIGDFVIETACRQLAQWQQQGYDT-LSLAVNISAVQFWRGDLFETISRAIEESGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 SARRLELEITETTMMEYPEVVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFAVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFVQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+   +I  LL+ 
Sbjct: 745 RPVPAEAIPALLER 758


>gi|332342881|gb|AEE56215.1| RNase II stability modulator protein [Escherichia coli UMNK88]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|239820751|ref|YP_002947936.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Variovorax paradoxus S110]
 gi|239805604|gb|ACS22670.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Variovorax paradoxus S110]
          Length = 723

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 125/431 (29%), Positives = 220/431 (51%), Gaps = 7/431 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR    DRL   +  +     L  TV+ I++D +K+IND LG   GD+
Sbjct: 275 HQATHDPLTGLPNRALLEDRLRQAISYADRYGRL-MTVVFINLDGFKRINDSLGRKGGDE 333

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLE 649
           +L  +  R+   L+  D + R  G+ F IIL  +  +   IA     + ++IA P  +  
Sbjct: 334 LLKVMAERMARCLRSVDTVVRTGGDEFVIILYDQPGDGTDIAPALRKLLETIAQPARIGS 393

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
           + + +T S+G A++ +    +  +L NA+ AM HAK  G N+ E +         D + +
Sbjct: 394 QAVQLTGSMGVATYPADGADADALLVNADAAMSHAKASGRNNFEFYAAEMSGAIRDELAL 453

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +E L  AV  SE +L Y P + +    + G+EALI+W HP+ G +S ++F+ +AEE  +I
Sbjct: 454 REGLRHAVARSEFHLAYQPQLDMESGRVTGVEALIRWQHPERGLVSPAQFIPLAEETGLI 513

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L        +W+D    PP  + +N++++   +  L   +   +  +   P  
Sbjct: 514 VPIGEWVLRTACFQNKAWQDAGL-PPFIVSVNVSARQFRERTLIAQVALALRDSGLEPRL 572

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES+VM + +++   +  LR +G+ L++DDFGT  S LS L   P   +K + S 
Sbjct: 573 LELELTESLVMEDLDKALQSMKALRAMGVQLSIDDFGTGYSSLSALKRFPIARLKIDQSF 632

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      E+  AI ++II +   +   +IA+ +  E  ++ L   GCD +Q    + P+ 
Sbjct: 633 VRDIPGDEEDKAIAKTIIALGHELNLKVIAEGVETEQQLEFLRAHGCDEMQGYLFSRPVP 692

Query: 946 FNSILKLLKER 956
              +  L++ R
Sbjct: 693 PAELAALVRMR 703


>gi|67922940|ref|ZP_00516436.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67855223|gb|EAM50486.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 679

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 143/594 (24%), Positives = 262/594 (44%), Gaps = 28/594 (4%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
           +  + I   + I      D  Q  +    V+  ++        ++          +D  R
Sbjct: 110 VSYYIISTALDIDLFNPLDPEQFEVGEETVMETMIADDNNNSTLINEESLQARDRNDLIR 169

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +     S + + + D   +     P                        H         
Sbjct: 170 LASFPELSPNPIIEIDFTGNLTYLNPAARIKF---------QSIEQEKLKHP----ILAG 216

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +L      +   L  E  +        +          S   ++R      DIT +K++ 
Sbjct: 217 LLSELHNIQGNLLLREVVI----GSEIFEQY---VHYLSEHQLIR--SYWFDITARKQAE 267

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   AF D LT +PNR  F + L   L  +  ++NL   V+ +D+D +K IND LG  
Sbjct: 268 KKLEYRAFSDTLTDLPNRNYFDENLEIALVKAKNNNNL-MAVVFLDLDCFKNINDSLGHK 326

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L S  +R+   ++  DI++R  G+ F ++L   N+     + A  + + +  P  
Sbjct: 327 VGDQLLKSFAQRLSSCVRNNDIISRWGGDEFTLLLPQINSPEDTINLAQRILEDLKQPFE 386

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDR 704
           +   ++ V  SIG A +         +LKNA+ A+Y AK RG NH   +   ++S  S  
Sbjct: 387 VAGHQLYVKTSIGIAIYPQDGEDGETLLKNADAALYRAKERGRNHYRFYSSTMTSKASLL 446

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  L  A+E   L L Y P + L + ++ G+EAL++W HP++GN+S  + + +AE+ 
Sbjct: 447 LKLENLLYQALEEESLSLHYQPQLNLTNNKVSGMEALLRWYHPEFGNVSPLKLIPLAEKT 506

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I+L++L+       +W+ +    PI I +N++ K      L + +  ++  T   
Sbjct: 507 DLIIPISLWVLKTACLQNKAWQKR-GFSPIPIAVNLSPKQFQQPNLVDIVAQVLEDTALE 565

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + L  +E+ +M N + SR  L  LR++G+ ++LDDFGT  S L YL   P  T+K +
Sbjct: 566 PHLLDLEITETAMMQNIDSSRETLQNLRELGVKVSLDDFGTGYSSLGYLQKFPVTTLKID 625

Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            S +    +     AI+ +II + ++ +  +IA+ +     ++ L  + C  IQ
Sbjct: 626 QSFIQTLQANSGNTAIISAIIALGQSFDLRVIAEGVETLQQLELLQGLNCREIQ 679


>gi|330957924|gb|EGH58184.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 683

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 215/446 (48%), Gaps = 9/446 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR     RL  IL+ +    + R  V+ + +D +K IN+
Sbjct: 239 RHEAESNLQRLAHYDFLTGLPNRLQLQTRLDRILEDAGRQQH-RVAVLCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQATIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E+ I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFEVAEQRIQLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+   +LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRDQLYLVYQPQISYRDNSVVGVEALIRWQHPEHGLVPPDAFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRCLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIHDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLL---KERFPLV 960
              + PL    +L  L   ++R P+ 
Sbjct: 657 YLYSKPLAARELLAYLKQARQRNPVT 682


>gi|88706995|ref|ZP_01104692.1| sensory box EAL/GGDEF family protein [Congregibacter litoralis
           KT71]
 gi|88698723|gb|EAQ95845.1| sensory box EAL/GGDEF family protein [Congregibacter litoralis
           KT71]
          Length = 796

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 231/457 (50%), Gaps = 24/457 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE +     +   A+ DNLT +PNR+ F ++LT +L L+    N    ++ +DID +K+
Sbjct: 323 VTETR---SKLRHAAYFDNLTSLPNRKLFTEQLTLLLRLAQR-GNQNVGLLHVDIDNFKR 378

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDIL-------------ARLSGNRFGIILISEN 625
           IND LG   GD +L  ++ R+   ++  D+L             +RL G+ F ++L    
Sbjct: 379 INDSLGATAGDQLLREVSERLAAGVRDSDVLHRGTDDESSLMDLSRLGGDEFTVVLNHIE 438

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A  +  SIA P  +  +E+ V++SIG A           +L+ A  AM +AK
Sbjct: 439 SIDMAKRVADRLASSIAEPYLIDRQEVIVSSSIGIALAPDHAADVETLLRAANTAMVNAK 498

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG N V  +  S      +R+ ++ DL  AVE  +L L Y P +  +D  + G E+L++
Sbjct: 499 KRGRNRVVIYDDSMESANRERLQLENDLRRAVELDQLLLHYQPQVDALDGRVTGAESLVR 558

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HPK G I   +++ IAEE+ +I+ +  ++L R   D++  R Q +  P  + +N+++ 
Sbjct: 559 WNHPKQGLIPPFKWIPIAEEMGLIEDVGEWVLRRACADLVELRAQGHSLP-KVSVNVSAL 617

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D E    + + +  +   P  +++  +E +++ N E    ++  L+ +GI L++DDF
Sbjct: 618 QFHD-EFVATVSSALQDSGLPPESLEVELTEGIMVSNQESVVSMVQNLKDLGIRLSIDDF 676

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL   P D +K + S + G  +      ++R+II MAK++   I+ + +   
Sbjct: 677 GTGYSSLSYLTRFPLDELKIDRSFVLGLAKGSQDVELVRAIIAMAKSLGLEIVVEGVERM 736

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK-ERF 957
            D++     G   IQ    + P+    +  LL  E F
Sbjct: 737 EDLEFFLGQGVSVIQGFLFSQPVPLTQLSPLLAPEHF 773


>gi|331677068|ref|ZP_08377764.1| protein gmr [Escherichia coli H591]
 gi|331075757|gb|EGI47055.1| protein gmr [Escherichia coli H591]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|301017630|ref|ZP_07182304.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|300400124|gb|EFJ83662.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|120556749|ref|YP_961100.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326598|gb|ABM20913.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 867

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 172/969 (17%), Positives = 349/969 (36%), Gaps = 140/969 (14%)

Query: 17  ILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIE 76
           +LV  L+     ++A  P  + S+++ +D  S  + + +      +     +       +
Sbjct: 10  VLVTLLVLCSQAAYANSPTVVISAEQPID--SQFQYWEDPDASASLQDVLALPDARWSRQ 67

Query: 77  VS---ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
                   I     W    + N +D++L  +  + + +L    F+  D  +      T  
Sbjct: 68  PDGKATLGITSSAYWLRIPVENAADTRLNLVAELGYSQLDDVRFYLLDGRTVTRTLETGD 127

Query: 134 EGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKDTVNSFTLY 191
                 R  N  +++ R  + PG   T ++ ++T    +  + +W  + + ++V      
Sbjct: 128 TRPFYPRDVNHPNNLLRFALEPGGTATLMIRVATQGTMVLPLTIWREHEFFESVADEQKL 187

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
                                           ++ ++L  +++   FL+    L     L
Sbjct: 188 H-------------------------FFYYGCLSVIILINLAV---FLTLREKLYLFYAL 219

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
                     S     F  +Y +                             P + A + 
Sbjct: 220 AIFGYLAFFASIRGFSFQHLYPN----------------------------APDLHAHVL 251

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
            +++  + ++   F +           L   A I + ++ I  ++++     N  IQ A 
Sbjct: 252 MLSMPFLAMFSILFCMEFLKVRQHSPRLR-KALIAMLVFEISYFVSVPFMSYNTGIQLAS 310

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           V  LV   +L+    I                              ++        +  T
Sbjct: 311 VSALVFFSLLLVAGPIAWAAGVRA---------------------GIFFT------LAWT 343

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           P    +L  +  ++      +                +  +    G   +   +  AD  
Sbjct: 344 PLTIGVLATSGRALGLFPETFFT--------------EYAMQIGSGLEAFILTLALADRL 389

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           +     +IR  ++S                  ++ + +      D +TG+PNR  F   +
Sbjct: 390 YREREQKIRAQADS----------LRQEKAHSEAQDRLNDVMSHDPVTGLPNRNRFEWMI 439

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK------- 604
              L         R  V V  I + K IN  LG+   + +L S+   +  L K       
Sbjct: 440 DEEL---RAHPERRYMVGVARITRLKDINRTLGLERSERLLRSIAEHMSALAKQLPMLHT 496

Query: 605 ------FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
                   + + +LSG+ FG+++  E           A+++ +A P+ L    I      
Sbjct: 497 SVDQQGRVERVYQLSGDSFGLLVDVERAGDNFLPLDQALKQ-LAEPVLLDHLAIEPHPRF 555

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVE 716
           G AS+      +SE+++NA + M  A H G      +  S+   D   +    DL  A+ 
Sbjct: 556 GAASYPEHGRKASELIRNAHVGMEMAPH-GPFETGFYSRSNDIYDERRLTLMSDLKEALT 614

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N    L Y P + L   +I+G EALI+W HP+ G +   +F+ +AE+  +I  +  ++++
Sbjct: 615 NGTTELHYQPKMDLRSGQIIGFEALIRWQHPERGWVPPIDFIPLAEKTGVITQLTHWVID 674

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +   D+ + +     P + + IN++++DLL   L E     +++       + +  +E+ 
Sbjct: 675 QALSDLRTLQK--IQPGLGMAINVSARDLLSAGLEEQFAQSLARHQLEAGHVTVELTETA 732

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
            M +PE+    LGRL  +G+ +++DDFG   S LSYL  IP   +K + +L+     ++ 
Sbjct: 733 AMDDPEKGLEALGRLSALGLRISIDDFGAGYSSLSYLKQIPASELKLDRTLVHDIQASDS 792

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL- 953
              I+ + I M   +   ++A+ +    D   L  MG D +Q   +  P    + +  L 
Sbjct: 793 ARVIVETAITMGHTLGYQVVAEGVESGQDAARLKAMGADLLQGFCLCRPQSLTATVDWLE 852

Query: 954 KERFPLVKN 962
           K+R P    
Sbjct: 853 KQRQPEESR 861


>gi|302187657|ref|ZP_07264330.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 820

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/595 (20%), Positives = 247/595 (41%), Gaps = 14/595 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           RL  +++    +   V++++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RLILNLLIAVNLVTAVVLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G P+      +  ND+ +  T+++  +  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDQSTLVEQIITGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+  + G I   + + +D+T++++ +  +   A  D L
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIY-TEGVISGAVLVLHDMTQEQQYIADLSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD           +M +D+D++K +ND  G A GD++L  L R 
Sbjct: 380 TGLVNRSEFERRLQRVLDEDCGQGRSHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCRD 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L+  D LARL G+ FG++L+       +            +      R    T SI
Sbjct: 439 LPHGLRDGDTLARLGGDEFGVLLVDCPAETALDIAEALREVVQRLHFMWKGRPFMTTVSI 498

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLA 714
           G      +  +    L  A++A Y AK RG N V+++ V       R   +   + L +A
Sbjct: 499 GLVHLGDTPASLEGSLSAADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHMA 558

Query: 715 VENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           ++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++ 
Sbjct: 559 MDENRFCLYAQEIASIKGEVGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDR 618

Query: 773 FMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++  + + I   +       P     IN++   + D+   E ++        SP  I  
Sbjct: 619 WVVHNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFETFAVSPEMICF 678

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +  
Sbjct: 679 EITETSAIADLQSAIRFINDLKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKD 738

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 MLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIESALQEMGVDFAQGYLISRP 793


>gi|293393471|ref|ZP_06637782.1| sensory box/GGDEF family protein [Serratia odorifera DSM 4582]
 gi|291424072|gb|EFE97290.1| sensory box/GGDEF family protein [Serratia odorifera DSM 4582]
          Length = 481

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 239/482 (49%), Gaps = 10/482 (2%)

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E  ++    +  ++       S S  + +  I    DITE++ + E +   A  D +TG
Sbjct: 1   MERWIKTVKGERLFLFRNKFVHSGSGKNEVFLICSGTDITEERHAQERLRVLANTDIITG 60

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR +  D++   ++  AT       ++ +D+D +KK+ND  G   GD +LV ++R I 
Sbjct: 61  LPNRNAIQDKIIQAIEARATS---SVGLVYLDLDNFKKVNDAYGHMFGDRLLVEVSRAIL 117

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           + L   ++LARL G+ F ++L+ + + + + + A  +   +  P  +   E+    SIG 
Sbjct: 118 DCLNHGEVLARLGGDEF-LVLVYQADRVMLQELAQRIIDRLKTPFRIGLIEVYTGCSIGI 176

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENS 718
           A           ++++A+ AMY AK  G      F   ++   ++ + +  +L   +E +
Sbjct: 177 ALCPEHGDDLDGLIRSADTAMYVAKELGKRTFTVFSPEMNQRVAEYMWLDTNLRKGLEQN 236

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +L + Y P I     E+  +EAL++WD P+ G I   +F+  AEE  +I  +  ++L+  
Sbjct: 237 QLVVYYQPKIDAYSGEVHSVEALVRWDSPERGLIPPLQFISYAEESGLITPLGQWVLKTA 296

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
           AR    W+ Q     + + +N++++ L+D+ + E +Q ++ +   +   +    +ES ++
Sbjct: 297 ARQAADWQRQGLN--LRVAVNLSARQLVDDSVVEDLQQVLQENHLTHCPLDFELTESSLI 354

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRI 896
            +  R+R ++ RLR++G  + LDDFGT  S L+ L  IP D +K + S +          
Sbjct: 355 EDENRARTVITRLRQLGAQVHLDDFGTGYSSLAQLARIPLDAIKLDKSFVRGVNLNPVSQ 414

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +++R+I+  A+ ++  +IA+ +  E +   L  +G D  Q    A P+    +   L+  
Sbjct: 415 SLVRAIVAAAEALQFRVIAEGVETESENHFLDCVGVDEKQGFLFARPMLPTQLEDWLRRY 474

Query: 957 FP 958
            P
Sbjct: 475 RP 476


>gi|215486583|ref|YP_002329014.1| RNase II stability modulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264655|emb|CAS09026.1| modulator of Rnase II stability [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 652

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 94  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 147

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 148 FKLFMSRREAAASRRNNRVFFRGGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 207

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 208 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 264

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 265 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 323

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 324 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 383

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A++N +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 384 CVFTPEMNQRVFEYLWLDTNLRKALKNDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 442

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 443 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 500

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 501 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 560

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 561 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 620

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 621 KNGVNERQGFLFAKPMPAVAFERWYKRYL 649


>gi|84624372|ref|YP_451744.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576007|ref|YP_001912936.1| C-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|84368312|dbj|BAE69470.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520459|gb|ACD58404.1| C-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 747

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         ++ I+ID++K IN
Sbjct: 309 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALVFINIDRFKLIN 367

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RI + L    +LARLSG+ F + L    ++ + +  A  +  S
Sbjct: 368 DSQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQC-SAEQASAVAERVLVS 426

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 427 IANPLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADMN 486

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P I       + G+EAL++W+HP+ G +S ++F
Sbjct: 487 RMAQERVALEAELRQAIGRDQLQLHYQPQIHSAAPHTLYGVEALLRWNHPQLGAVSPAQF 546

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 547 LQVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLQL 605

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+     PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 606 IADMGVKPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 665

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A++ S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 666 IDELKLDMSFVRDIEHSEDARALITSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 725

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 726 QGYLFSRPLPAAALEAWLGAQ 746



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q         + A+ GS   +   D+    +        + G     + G   + + 
Sbjct: 23  AGEQPEQRRSRLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGQRPSDVL 82

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               +D+     + D     +    + E  V   D    W+ +   P+ +++   L Y+ 
Sbjct: 83  TRAQSDQSEVARVRDRADALQ--HTRAELLVYRKDGTPLWISLNFNPIYDADHTPLHYVA 140

Query: 515 IANDITEQKKSL 526
           +  DIT+ K   
Sbjct: 141 VLTDITDTKMHE 152


>gi|171057980|ref|YP_001790329.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170775425|gb|ACB33564.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 568

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 146/554 (26%), Positives = 240/554 (43%), Gaps = 13/554 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D V   D+     +      +I G ++  M G        +   DR     
Sbjct: 16  FKSVIDSTTDAVITKDLHGIVTSWNRAAESIFGYSAAEMIGQPMV---KVFPADRLQEEP 72

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++ + +G       +E      D     +   I P+ +S G I+    IA DITE+ ++ 
Sbjct: 73  MILARIGRGERVDHFETVRVRKDGSLVNVSATISPLHDSEGRIVGASKIARDITERIQAE 132

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             I   A  D LT +PNR+ F +RLT  L  +         VM ID+D++K +ND LG  
Sbjct: 133 RTIWLQANHDTLTSLPNRRHFQERLTLELARARRMQR-HLAVMFIDLDRFKDVNDTLGHQ 191

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GDD+LV   +RI   ++  D +AR+ G+ F I+L       ++   A  +   +  P  
Sbjct: 192 AGDDLLVQAAQRIRAAVREIDTVARMGGDEFTILLPDLVAGDEVEPIARRVNLCLFKPFT 251

Query: 647 LLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
           L  +  + ++ SIG A +     T+  +L +A+ AMY +K  G N    F     S   D
Sbjct: 252 LDGQTSVQISGSIGVALFPQDGETADVLLMHADQAMYESKRLGRNQARHFAKALESNIRD 311

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  AVE  EL L   P++ L D  +   EAL++W HP +G IS S FM +AEE
Sbjct: 312 RMRLTHDLRHAVERGELSLSLQPLVDLRDGSVRQHEALLRWVHPVFGAISPSVFMPLAEE 371

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTL 822
             +I+ I  +  + +AR     R +A  P I + ++++   L              ++  
Sbjct: 372 TGVIRDIGDWAFDTVARQAAD-RSRAGSPVIPVSLDVSPVQLHAGLGYFRRWLDEWARLE 430

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES +    +    LL +L   G+ L +D FG   S LS L  +    +K
Sbjct: 431 LPADALALEIAESALAEPSDGVGELLQQLGAAGVPLIVDHFGAGASCLSRLNRLDIGMLK 490

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL+       K   +  +++ MA  +   ++A+ +        L RMGCD+ Q    
Sbjct: 491 LDPSLLRDLGVDGKSTRLCEAMVQMAHTLGLQVVAQGVETPAQRALLARMGCDFGQGHLF 550

Query: 941 A--SPLGFNSILKL 952
           A   P     +   
Sbjct: 551 AAIEPGPGAEVPAW 564


>gi|331682775|ref|ZP_08383394.1| protein gmr [Escherichia coli H299]
 gi|331080406|gb|EGI51585.1| protein gmr [Escherichia coli H299]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|89094011|ref|ZP_01166955.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
            region:Histidine kinase A, N-terminal [Oceanospirillum
            sp. MED92]
 gi|89081685|gb|EAR60913.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
            region:Histidine kinase A, N-terminal [Oceanospirillum
            sp. MED92]
          Length = 1083

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 120/501 (23%), Positives = 239/501 (47%), Gaps = 22/501 (4%)

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D D +   L++ V  R+   + EF++    D     +  R   +               
Sbjct: 600  DDIDGYLGELEAEVKQRK---RTEFQLLKVQDGLEERVAERTSELE-------------V 643

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
             + E+ ++ + +   A  D LTG+ NR+ F   L  IL  + T+   +  +++ D+D++K
Sbjct: 644  QVEERTRAEKQVRHLAEHDALTGLANRRGFQQELECILRKADTNGK-KVALLLFDLDRFK 702

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ++ND LG A+GDD+L S+   +   ++  DI+ARL G+ F I++ +  +   + + A+ +
Sbjct: 703  EVNDTLGHAIGDDLLCSVADLLRANIRDEDIVARLGGDEFAIVMSNLASVDGVINTALRI 762

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
             ++++ P+ L    I    S+G   +        +++ +A+LAMY AK +GG   + F  
Sbjct: 763  IETLSKPLQLSGHTIRTGTSVGITVYPDDSGDPEQLMLHADLAMYQAKDKGGQCYQFFEL 822

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +     ++  I+  L  A+++SE  L Y P     + ++ G EALI+W  P+ G IS  
Sbjct: 823  PMHDKLVEQKRIENGLHRAIQDSEFCLYYQPRYDYSNSKLDGFEALIRWQCPERGLISPG 882

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            +F+ +A+   ++  I  ++L    +  + W  Q       + +N+ +  L      E ++
Sbjct: 883  DFLPVAQRSGLLPHIESWVLLEACQQALKWHQQGVSFG-RVAVNVCAVGLQQQGFYERIE 941

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              + KT   P  +++  +E  ++G  +     L RL+ +G+S+ LDD G + S L  L  
Sbjct: 942  KALDKTGLPPELLEIEITERALIGRYDVVVDNLMRLKSLGVSIALDDLGAEHSSLQRLIE 1001

Query: 876  IPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             P D +K +   +    E K  A++  ++ +A   E  ++A+ +  +  +  L   GC  
Sbjct: 1002 CPIDVIKIDRFFIDHVGELKSEAVIAGLLAIAGKTEMKVVAEGVETKEQLDFLIGSGCYV 1061

Query: 935  IQDSHVASPLGFNSILKLLKE 955
            +Q  + A P+  N I + +  
Sbjct: 1062 VQGFYHAKPMPANEINRYMDS 1082


>gi|30250015|ref|NP_842085.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC
           19718]
 gi|30139122|emb|CAD85986.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas
           europaea ATCC 19718]
          Length = 961

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 136/661 (20%), Positives = 275/661 (41%), Gaps = 37/661 (5%)

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
           + +I +   + +    +             ++     IGL   +       +     + G
Sbjct: 308 MVAIAVTVLWVLAVLLVVNIVPGRFRSLVLLVSLAAGIGLVTMLLGVFHIWLPPGVALIG 367

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            + +  L  +  I   + + + +                  + V   D   + +    + 
Sbjct: 368 TLAVYPLQSWQRINEFIQSQFITGSCLQA------VFDSVQEGVITVDAKGNILYLNQES 421

Query: 435 ATILGLASGSMHGPIRNWLPYI--HINDRDNFRTILDSFVGYRRGRLQYEFRVRA----- 487
             ILG  S  + G     L  +    + +D          G      + + R++      
Sbjct: 422 ERILGARSEQLIGKPLEQLIGVCLIPDKQDR------DVNGSGSADTRPDSRIQHCVLTL 475

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                  + +  R + +        +   +DI++  +  + I   A  D LT +P+R   
Sbjct: 476 PSGDRRTIRVTHRALYDRWRIPAGAVVTISDISDTLEMKQQIARQANYDVLTMLPSRNFL 535

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L R    L +SA        V ++ +D + KIND  G   GD +L  +  R+ +L+   D
Sbjct: 536 LSRFGE-LAVSARQHGAALIVCLVSVDNFSKINDAFGYHSGDALLKMIADRLLKLVCSED 594

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW---T 664
           ++AR SG+ F +++       +   FA  ++++I     +  +E+ ++ASIG        
Sbjct: 595 LIARWSGDEFMLVVDRPVREGQELQFARKVQETINRRFEINGQEVFISASIGIRISSQPD 654

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRSDRVMIKEDLCLAVENSE-- 719
                S   L  A  AM   K +GGN  + +   +++++  +++  + D  LA+EN +  
Sbjct: 655 QVDEKSEIFLDEAVSAMRRVKRQGGNGFQFYASGQMNAWTREQLEFERDFRLAIENQDKA 714

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L++++ PI+ +  + +V  E L++W HP  G +S  +F+ +AE + +I  +   +L    
Sbjct: 715 LHVLFQPIVDVQQKRVVHNEVLVRWAHPTRGLLSPGDFIPLAERVGLIGQLGDLVLWISC 774

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R               I +N+AS+ LL  +  + +  ++ +T     R+ L  +ES V+ 
Sbjct: 775 RIAADLAKVGQAVD--ISVNVASRQLLHPDFLQKVAGVLERTGLPAGRLMLEITESAVIS 832

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----- 894
           +  R+   L RL+ +G+++ LDDFGT  S LS L  +P D +K + S + G  +      
Sbjct: 833 DLPRAAEALVRLKALGVAIALDDFGTGYSSLSLLRELPLDILKIDKSFIQGIEQDHPGDE 892

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               AI R+II +  N+   +IA+ +  E  ++ L +  C   Q  + + PL    +++ 
Sbjct: 893 KFDFAIARAIIALGDNLGLGVIAEGVETEKHMEFLRKHHCYLQQGYYFSRPLSTTQLMQF 952

Query: 953 L 953
           +
Sbjct: 953 M 953


>gi|82544260|ref|YP_408207.1| RNase II stability modulator [Shigella boydii Sb227]
 gi|307137927|ref|ZP_07497283.1| RNase II stability modulator [Escherichia coli H736]
 gi|331641849|ref|ZP_08342984.1| protein gmr [Escherichia coli H736]
 gi|81245671|gb|ABB66379.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|331038647|gb|EGI10867.1| protein gmr [Escherichia coli H736]
          Length = 661

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S    +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|241205728|ref|YP_002976824.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859618|gb|ACS57285.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 694

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 225/457 (49%), Gaps = 10/457 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L       D+   + ++E     +  D LT + NR +F + L+ +++    D      V
Sbjct: 229 VLGASTYIIDMQSTQAAVERYRHLSLHDPLTNLANRAAFNEHLSALVNKPK-DMTANIAV 287

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  D+D++K+INDV G A GD VL ++  R+ +++     +AR+ G+ F  ++       
Sbjct: 288 LSFDLDRFKEINDVHGHAAGDAVLRAVAERLSKIMLNGQFVARVGGDEFVAVMCDYFVRS 347

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  M   IA PI      +TV +SIG +++     T  ++L  A++AMY AK   
Sbjct: 348 DAKGLAQRMLDEIARPIEWNGHALTVGSSIGISTYPGQADTLDDLLSQADIAMYRAKSTA 407

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +  +   +     +R  +  ++   +   E  L Y      +  +IVGLE L++W H
Sbjct: 408 TNSICFYEPSMDQAARERNALASEMREGLARGEFELFYQQQNDTVTRDIVGLEVLLRWRH 467

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G IS  EF+ IAE+   I  +  ++L     +  +W++     P+ I +N+A + L 
Sbjct: 468 PVRGYISPVEFIPIAEKTGFIIELGEWVLRAACAEAATWKN-----PLRIAVNVAPQQLG 522

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           DN L + +  ++ +T    +R+++  +ES ++ + + +   + RL+ +G+ + +DD+GT 
Sbjct: 523 DNRLPQIVHQILLETGLPAARLEIEITESGIIADHQHALQAIRRLKALGVKVAMDDYGTG 582

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LS L   PFD +K + + + G  + ++  AI+RS + +A +++  ++A+ +  E  I
Sbjct: 583 YSSLSTLQSFPFDKIKIDRAFVDGVVTNKQSAAIVRSTLILAASLDIPVLAEGVENEDHI 642

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             L R GC  +Q      P   + I  ++    P  +
Sbjct: 643 DFLRREGCLQVQGFLFGKPGPRSGIEAIVNGEVPAAQ 679


>gi|152970994|ref|YP_001336103.1| hypothetical protein KPN_02455 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150955843|gb|ABR77873.1| hypothetical protein KPN_02455 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 595

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 128/425 (30%), Positives = 214/425 (50%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 178 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGC-AVVMLFDLDSFKDVNDTLGH 236

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  + L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 237 DAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALER-ANIIREKISQPY 295

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 296 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 354

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 355 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 414

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I A+  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 415 IGLINALGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIEVLHQTGL 469

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR++GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 470 DPRRLDLEITESDVFNENTRSLEILSQLRELGIQISIDDFGTGYSSLSRLSYFPFDKIKI 529

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 530 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIG 589

Query: 942 SPLGF 946
            P   
Sbjct: 590 KPSPL 594


>gi|330963771|gb|EGH64031.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 712

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 116/582 (19%), Positives = 240/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D         P I
Sbjct: 122 VLKPKVQTLLEQQRNRRALQQLSMELESARTFNASVLANVAEGILVVDEAGKISFANPAI 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I         +              ++  +R        
Sbjct: 182 CQLLNASVDQLRGTQVLDY-VIEPQVGSWLESGFYQHYRKADTYRVHDAILRTTQGSQLP 240

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     + ++
Sbjct: 241 VALSCAALPAEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESM 297

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  + ++  D+LAR+ G
Sbjct: 298 LLRNERADKY-LVVLFMDLDGFKQINDALGHDAGDQVLLWVAEQFKDSMRPYDVLARIGG 356

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +IT+ AS+G A++         +L
Sbjct: 357 DEFTVVIDGLDYPEQAAKIAEKLIERVSGRRQVNGVDITLGASVGIATFPDCGSNLDGLL 416

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 417 RAADIAMYEAKRAGRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVGD 476

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W       
Sbjct: 477 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQAWSGVFAA- 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + + ++        L   ++  + +    P +I++  +E  ++ N   S   L  L 
Sbjct: 536 DVVLSVCVSPTQFCMPNLASELKRAMDRFDLKPGQIEVEITEGSLVHNLTHSHKQLKLLH 595

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LDDFGT    LS+L  +  DT+K +   +    E R   A+ RSII +++N++
Sbjct: 596 EVGVRIALDDFGTGECSLSHLRNLQLDTLKLDRRFVANIVESRREAAMARSIIDLSRNLD 655

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 656 MLVIAEGVETVEQYQWLVDNGCQVMQGFLIAHPMVAEDALHF 697


>gi|229525311|ref|ZP_04414716.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
 gi|229338892|gb|EEO03909.1| C-di-GMP phosphodiesterase A-related protein [Vibrio cholerae bv.
           albensis VL426]
          Length = 685

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 113/453 (24%), Positives = 221/453 (48%), Gaps = 10/453 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + ++         + + K+  E  +   A+ D+LTG+ NR   L +L+  ++ +  + + 
Sbjct: 214 DDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSGAIETAQ-NSHS 272

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  +D+D++K IND LG  +GD ++ ++  R+    K   + AR+ G+ F +++   
Sbjct: 273 TGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL 332

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  K  + A  +   I+ P  + + +   T SIG + + S   ++ ++L+ A+ A+Y A
Sbjct: 333 -SPAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSSNIDVLRQADTALYRA 391

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    +           + I++ L  A+   +L L Y P +      I+G+EALI
Sbjct: 392 KASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALI 450

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINI 800
           +W+HPK G +    FM IAEE   I  I  +++E+       W+ Q  +PP F  + INI
Sbjct: 451 RWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINI 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +          E +   + +   +   I+L  +ES+++ N E +   + +L++  IS+++
Sbjct: 511 SPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISI 570

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L YL ++  D +K + S +      +   AI+ +I+ +A+ +   +IA+ +
Sbjct: 571 DDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGV 630

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++  L ++G +  Q      PL    I +
Sbjct: 631 EDTSELAALKKLGWNQFQGYLFDKPLRAEEIAQ 663


>gi|315619367|gb|EFU99911.1| protein gmr [Escherichia coli 3431]
 gi|323162350|gb|EFZ48205.1| protein gmr [Escherichia coli E128010]
          Length = 639

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 81  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 134

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 135 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 194

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 195 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 251

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 252 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 310

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 311 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 370

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 371 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 429

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 430 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 487

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 488 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 547

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 548 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 607

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 608 KNGINERQGFLFAKPMPAVAFERWYKRYL 636


>gi|59711592|ref|YP_204368.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59479693|gb|AAW85480.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 827

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 219/441 (49%), Gaps = 6/441 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I ND    +K+   +   A  D LT +PNR     R+   +  +     +   +M +D+D
Sbjct: 386 ICNDFKVLEKTKNKMQYMALHDGLTQLPNRVMLESRIEEEIVKAQQSGKM-IALMFVDLD 444

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND  G  VGD +L  ++ R    ++  +I+AR  G+ F     +  +      + 
Sbjct: 445 DFKKVNDHYGHDVGDKLLTLISSRFSHFIEKDEIVARFGGDEFVFCFSNLTSQQDAELWV 504

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
             ++       ++  +EIT   SIG A +      SSE++  A++ +Y +K  H+G +  
Sbjct: 505 EKIQSVFENVFSINGKEITTGCSIGVAMYPKDATCSSELISKADIVLYKSKDVHKGASLF 564

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +    S    ++E+L  A++  E+ LVY P I     EI G+E L +W + K G++
Sbjct: 565 FDKSIDEQVSYEFSLEEELKNALDKREVTLVYQPQIDTKTGEIYGVEVLSRWCNNKLGSV 624

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ +AEE+ MI  +  F+L++   DI           I + +NI+ K L+      
Sbjct: 625 SPVKFIAVAEEIGMIDQLGDFVLQQACEDIQEVMP-NGTNAIMLSVNISPKQLIKKGFLS 683

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++S+T    SRI    +E++++ + +    +L  L+K+G  ++LDDFGT  S LSY
Sbjct: 684 RIMKIVSRTGIDVSRITFEITENILISDLKSVSPILLELQKLGFGISLDDFGTGYSSLSY 743

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S ++     ++  +++++II +  + + T++A+ +  +  +++L   
Sbjct: 744 LNILPITEIKIDRSFVSSLFTNDQSESLIKAIIAIGASCQMTVVAEGVETKEQLEKLKEY 803

Query: 931 GCDYIQDSHVASPLGFNSILK 951
            CD +Q  ++  PL  + +  
Sbjct: 804 QCDLVQGYYLDKPLSISELKA 824


>gi|330960555|gb|EGH60815.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 818

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/566 (21%), Positives = 239/566 (42%), Gaps = 20/566 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
               F+  +  + ER  + +   GD V   D+    V   P    +    S    G P+ 
Sbjct: 232 QRRLFADALVLEKERAQITLESIGDGVISTDMTGTIVYMNPAAEGLTHWQSAQACGLPLA 291

Query: 451 NWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                +  ND+ +   ++D  +  + +G       ++  D     + +   P+  ++G +
Sbjct: 292 ALFNLVDENDQRDSAALIDQILAGKLKGGSANSKLIQRLDGSTVSVALVGTPIY-ADGMV 350

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + + +D+T++ + +  +   A  D LTG+ NR  F  RL  +LD   T  +    +M
Sbjct: 351 SGAVLVLHDMTQEHQYIADLSWQAAHDPLTGLVNRSEFERRLQLVLDDVGTGSHC---LM 407

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE--NNS 627
            +D+D++K +ND  G A GD++L  L + + + L+  D LARL G+ FG++L+    N +
Sbjct: 408 FLDLDQFKLVNDTGGHAAGDELLRKLCKALPQGLREGDTLARLGGDEFGVLLVDCPPNTA 467

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             IA+    + +S+        R    T SIG         T    L  A++A Y AK +
Sbjct: 468 HDIAEVLRQIVQSLH--FMWKGRPFMTTVSIGLVHLGEDSATLETSLSAADMACYMAKEK 525

Query: 688 GGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM--DEEIVGLEAL 741
           G N V+ + +       R   +   + L +A+E +   L    I  +    + +  +E L
Sbjct: 526 GRNRVQVYSIDDLTLSMRFGEMAWIQRLRMAIEENRFCLYAQEIASIKESGDGVRHIEIL 585

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR--DQANMPPIFILIN 799
           ++        ++   F+  AE   ++  ++ +++  + + I      D+   P     IN
Sbjct: 586 LRLRDESGRMVAPDSFIPAAERYGLMSTLDRWVVRNVFKIIAECTSDDRHKAPQALCAIN 645

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   + D+   E ++   +    +P  I    +E+  + +   +   +  L+ +G   +
Sbjct: 646 LSGTSIGDDTFLEYLKLQFATHNIAPDMICFEITETSAIADLGSAIRFINELKALGCLFS 705

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDF +  S  +YL ++P D +K +GS +          A++  I  +   +    IA+ 
Sbjct: 706 LDDFCSGMSSFAYLKHLPVDFLKIDGSFVKDMLDNPINRAMVEVINNIGHVMGKLTIAEF 765

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASP 943
           +        L  MG D+ Q   +  P
Sbjct: 766 VETPQIESALQEMGVDFAQGYLIGRP 791


>gi|254457962|ref|ZP_05071389.1| sensory box sensor/ggdef/eal domain protein [Campylobacterales
           bacterium GD 1]
 gi|207085355|gb|EDZ62640.1| sensory box sensor/ggdef/eal domain protein [Campylobacterales
           bacterium GD 1]
          Length = 642

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 226/438 (51%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   +  D+LTG+PNR    +++   +   A +++ +  ++ +D+D +K IND L
Sbjct: 205 ELNKELKHTSLHDSLTGLPNRLYLNEQIEK-VKHYADENSKKFAIIFLDLDHFKNINDTL 263

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L ++   +   +   D++ R+ G+ F I++   ++  ++      + +    
Sbjct: 264 GHDIGDALLQTVANILRNGVNKNDLITRIGGDEFIIVISDFDSDDELLPIITNLLREFRK 323

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
            + +    + ++ASIG + +     +  E++K A++AMY+AK  G ++   F    ++  
Sbjct: 324 ELLIKGYSLRLSASIGISIFPDDSSSIRELMKYADIAMYNAKADGRDNFSFFTQSLNTKI 383

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            + V I  D+  A  ++E  L Y P +    ++IVG EAL++W H + G I    F+ I+
Sbjct: 384 HNEVDIINDMQRAFYDNEFKLYYQPKVDAKSKKIVGAEALLRWIHHEKGLIGPDVFIPIS 443

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    + ++  F+++  +  I  + D      + + INI+++   + +L + ++  +SK 
Sbjct: 444 ESTGFMLSLGKFVIQESSLAIRRFSDLGYN-GLKVSINISTRQFQNTDLYQDLKEELSKN 502

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++ +  +ES++M + +++   L  ++ +G+S+ +DDFGT  S LSYL   P DT+
Sbjct: 503 DVDPKQLGIEITESIMMQHIKKTLTTLQEIKNLGVSIYIDDFGTGYSSLSYLKKFPIDTL 562

Query: 882 KFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K + S +   +E       +L +I+ M K++   ++A+ +  E     L   GC+ IQ  
Sbjct: 563 KIDKSFVDDISEVGNNDEILLNTILAMGKSLGLDVVAEGVEHEYQYSYLKEHGCEIIQGY 622

Query: 939 HVASPLGFNSILKLLKER 956
           + A P+     +KLL E 
Sbjct: 623 YFAKPMPEEEFIKLLHEE 640


>gi|295836377|ref|ZP_06823310.1| diguanylate cyclase/phosphodiesterase [Streptomyces sp. SPB74]
 gi|295825991|gb|EDY45592.2| diguanylate cyclase/phosphodiesterase [Streptomyces sp. SPB74]
          Length = 764

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 219/440 (49%), Gaps = 8/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    +         +D LTG+PNRQ  L+R+ T LD +      R  +++ID+D+++ +
Sbjct: 306 TSLWMAHARAEEQ-LRDPLTGLPNRQWLLERIWTALDAAERQGG-RIALLLIDLDRFRSV 363

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+ +  R+   L      ARL G+ F I+L + +++      A  +  
Sbjct: 364 NDTLGHLAGDRLLLQVAERLRVSLPREAEAARLGGDEFAILLPATDSTTAAQRLARRLVG 423

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVS 698
            +  P++L    + + AS G A +    + +  +L+ A++AMY AK  R G  V   +  
Sbjct: 424 ELGSPLDLDGLTLVLEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRD 483

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   DR+ +  DL  A++  ++ L Y P +R  D E+ GLEAL++W HP+ G +   EF+
Sbjct: 484 SNTPDRLGLLGDLRRALDTGDVELHYQPKVRF-DGEVAGLEALVRWVHPERGKVPPDEFI 542

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   ++  +  ++LE     +  WR Q    P  + +N++ +D+        +   +
Sbjct: 543 AIAESSGLMPYLTEYVLETALGQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGAVAGRL 600

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P  ++L  +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P 
Sbjct: 601 ARHGVPPGALQLEITEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPV 660

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q
Sbjct: 661 SELKIDRSFVARLAIDTEDAEIVRCTVDLAHSLGLVVVAEGVEDDETWERLRDLGCDAVQ 720

Query: 937 DSHVASPLGFNSILKLLKER 956
              V++ +        L+ R
Sbjct: 721 GWLVSAAMPPEETTAWLRAR 740


>gi|116251285|ref|YP_767123.1| GGDEF domain/EAL domain-containing protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115255933|emb|CAK07014.1| putative GGDEF/EAL sensory box domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 632

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 137/575 (23%), Positives = 249/575 (43%), Gaps = 35/575 (6%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
               Q      +   + +      +  +D  +    +      +  L +  +        
Sbjct: 63  SALGQAFDGQKKLFEIILNNLPLGLSVFDADQRLTLSNIRFRQLFDLTAEDLTAGAT--- 119

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY- 512
                    +    +      + GR       R +        +R R     +G I++  
Sbjct: 120 -------IADLTAKMRGRESTKPGRRTG----RHSSATAKSSGLRRREWLMDDGRIIQSM 168

Query: 513 ---------IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                    I I  DITE +++ E I   A  D LTG+PNR  F +++   L  +    +
Sbjct: 169 VTILSDGSNISIHADITEDRRAAERITYLAHHDPLTGLPNRIHFREQVDATL--AERKPD 226

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  ++ +++D++K IN+ +G++ GD +L  +  R+       + LARL  + F I+   
Sbjct: 227 EQIALVHLNLDRFKSINNTMGVSAGDKILQQVAERVRASAGSENTLARLGSDEFAILQTG 286

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +     +   A  +R+ ++ P    E+++ ++ S+G A        +  +LKNA +A+ H
Sbjct: 287 KQQPWNVTALAEQIRRELSEPFFHGEKQVELSVSMGIAIAPEDGEETDILLKNAGVALSH 346

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F        ++   ++ DL  AVEN E  L Y P+  L    I G EAL
Sbjct: 347 AKADGRKRERFFAGEMEAQMQLRHALEADLKAAVENEEFELHYQPLYDLSQRRICGFEAL 406

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+HP  G +   +F+ +AEE+ ++  I  ++L R   D   W +      I I +N++
Sbjct: 407 IRWNHPVRGRVPPMDFIPLAEEVGLVVDIGRWVLRRACNDAALWPE-----GIKIAVNVS 461

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +     ++L   +   ++    SPSR++L  +ESV+M N      +L  L++ GI +++D
Sbjct: 462 AIQFSSSDLTRDVSEALAAAALSPSRLELEITESVLMENLSEVLPILHALKERGIRISMD 521

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL   PFD +K + S +    + R   AI+ +II +   +   +  + + 
Sbjct: 522 DFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNREAHAIMHAIILLGDALGMRVTVEGVE 581

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               +  L    CD IQ  H++ P     +  LL 
Sbjct: 582 TVEQLALLECEECDEIQGYHISPPRPACDVPHLLS 616


>gi|298488007|ref|ZP_07006044.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157286|gb|EFH98369.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 821

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/596 (21%), Positives = 247/596 (41%), Gaps = 15/596 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   VL+++L    V + ++    F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAVLLILLALLRVRRLIVQRRVFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G         +  ND+ +  T+++  V  + +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSTQASGLPLTALFNLLDENDQKDTSTLVEQIVTGKLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDN 537
                 ++  D     + +   P+ N  G +   + + +D+T EQ++ +  +   A  D 
Sbjct: 321 SANSKLIQRLDGSTVSVALVGTPIYNE-GVVSGAVLVLHDMTQEQRQYIADLSWQAAHDP 379

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+ NR  F  RL  +LD    D      +M +D+D++K +ND  G A GD++L  L R
Sbjct: 380 LTGLVNRSEFEHRLQRVLDGID-DQASSHCLMFLDLDQFKLVNDTGGHAAGDELLRQLCR 438

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + + L+  D LARL G+ FG++L+       +            +      R    T S
Sbjct: 439 ALPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTLHFMWKGRPFMTTVS 498

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG      +  T    L  A++A Y AK RG N V+ + V       R   +   + L +
Sbjct: 499 IGLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLSMRFGEMAWIQRLHM 558

Query: 714 AVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++
Sbjct: 559 AMDENRFCLYAQEIASIKGEGGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLD 618

Query: 772 LFMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            +++  + + I   +  D+   P     IN++   + D+   E ++        SP  I 
Sbjct: 619 RWVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKQQFKAFAVSPGMIC 678

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 679 FEITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 738

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 739 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVDFAQGYLISRP 794


>gi|238794500|ref|ZP_04638109.1| phosphodiesterase [Yersinia intermedia ATCC 29909]
 gi|238726183|gb|EEQ17728.1| phosphodiesterase [Yersinia intermedia ATCC 29909]
          Length = 865

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 219/440 (49%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++S + I   AF D+LTG+PNR  FL      L L+ T+ N    V+VI++D++K++N
Sbjct: 425 EREQSHKQIQRLAFYDSLTGLPNRTQFLIYAKQALALA-TETNYTLAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG+A GD++L  + +R+   +   DI+ RLSG+ F IIL       +       M   
Sbjct: 484 DSLGLAAGDELLALIAQRLRSEMSKDDIIGRLSGDEFIIILAPCT-MQQATVKVEKMLSL 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +AS+G + +  + +    ++ +A++AM+ AK  G  H   F     
Sbjct: 543 LSQPCQIASVNIIPSASVGISLYPENGLEMDALMNHADIAMHKAKDMGRGHFNFFSAEMN 602

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++    +++ L  A     L L Y P + L D  I G+EAL +W HP  GNI    F+
Sbjct: 603 TLNQQRQDMEDALRQAFHIGSLELFYQPQVMLKDGNIYGVEALSRWMHPILGNIPPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  + L+ +E     +  WR +    P  I +N++  +  +  L + +  ++
Sbjct: 663 PIAEECGLINELALWAIETACHQLADWRLRGIDVP-SISVNLSPTNFNNQGLPDMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N +    ++ ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 QHYHLPPQDLTLEITEDILITNNQAIFAIIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEHDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYKIGQ 841

Query: 937 DSHVASPLGFNSILKLLKER 956
               +  L    + + L++R
Sbjct: 842 GFLFSEALSAGKLEQWLEQR 861



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 78/222 (35%), Gaps = 26/222 (11%)

Query: 392 ATGYFSQGIFSDG--ERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                 QG       E  +L  A+  S   + ++D+    +    +     G     + G
Sbjct: 4   RKTAALQGATQSEYDENYALLSALDSS-LAIIEFDLNSRIIAVNQNYLDYFGYQRDEVIG 62

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                  +    + + ++T+    +  +    ++E R+   +    W+    +P+   +G
Sbjct: 63  QHHLMFCHQQYANSEEYQTLKKCLLAGKSVEGRFE-RL-HKNGSTVWLAAIYQPVPGPDG 120

Query: 508 DILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            + R + IA DIT   EQ+K+ +  +       LT +       DR  + + ++A  +  
Sbjct: 121 TVTRMVKIAKDITFLIEQQKATQEWVQL-----LTQL------TDRSDSAMFIAANSEQG 169

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           +  V  I+   + K+    G      +  ++   +       
Sbjct: 170 QQAV-YIN-QGFTKL---FGYTPEQALGQNMVDLLQSAHPEQ 206



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G    + L   H         ++DS     R +L  +    
Sbjct: 173 VYINQGFTKLFGYTPEQALGQNMVDLLQSAHPE----QLRLMDSTSPNSRQQLLPKELFY 228

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + D Q HW    I  + +  G     IG+  DIT  K   
Sbjct: 229 SKDQQPHWCSAIINSLVDEQGKPSYSIGVLTDITLTKMYE 268


>gi|256377498|ref|YP_003101158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255921801|gb|ACU37312.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 673

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/570 (22%), Positives = 253/570 (44%), Gaps = 18/570 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +  V A          + +    A +      W+W I  DRV  +  +  + G  +G+ 
Sbjct: 94  RVADVTAWRDRELEATHEADALRRAQVLGRMGTWEWHIAEDRVEWSDTLLGMFGYPAGTA 153

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSN 504
                 +  ++H +D    ++ L   +    G   Y  R+   D     W       +++
Sbjct: 154 L-DYAAYTGHVHPDDLPTIQSTLTEALRTGAG-FSYTHRMTLGDGVTERWFECFGEVVTD 211

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G   R +G A+DIT+ ++  + +L  A QD LTG+ NR++    L   L         
Sbjct: 212 PDGTPQRVLGTAHDITQSRRVHDELLALAEQDPLTGLANRRAVTRELERRLAT-----GG 266

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +++++D+D +K +ND+ G AVGD ++ +L   +   L+   ++ RL G+ F ++L   
Sbjct: 267 TGSLLLLDLDNFKDVNDLRGHAVGDRLMRALAAALRTRLEPEHLIGRLGGDEFAVVLPD- 325

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                 A  A  +R +IA  + L       T S G A + +S  T   +L NA+LA+Y +
Sbjct: 326 TGPADAARVAEHLRDTIAR-LPLATPATRTTISTGVAGYGTSGDTWELVLANADLALYAS 384

Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N V  +    +      +   + L  A++   L L   P++RL    ++G E L+
Sbjct: 385 KAAGRNRVTVYEPGHYADTAKRVSVLDRLRGALDGGGLALHAMPMVRLATGRVLGHELLL 444

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           + +  +   +  ++F+  AE   ++  I+ ++L      ++        P +   +N++ 
Sbjct: 445 RLEDGQEPRLGPADFLPEAERTNLVHEIDRWVLATAIDTLVRH----PDPELRFNVNVSG 500

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L D E    +   ++    +P R+ +  +E+  + N + +R L  +LR  G  + LDD
Sbjct: 501 RTLEDPEFGGFVLDRLAGAGVAPGRLGIEITETAAVTNLDAARTLAHQLRGHGCRIVLDD 560

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FG+      +L ++P   +K +G  + G  E+     ++  I+ +A+ +  + +A+ +  
Sbjct: 561 FGSGFGSFVHLKHLPITGIKIDGEFVRGIDERGPDAVLVSGIMRIAQGLGLSAVAEWVER 620

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              ++ LT +G    Q  H+  P+    +L
Sbjct: 621 PEQVRTLTSLGVRVGQGFHLGGPVPLGQVL 650



 Score = 39.9 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 24/133 (18%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  +       D         P +A ILG+    + G                   
Sbjct: 6   HREVLQRTDIGYGVTDPATTLRWANPALAGILGIDPEHLPGR------------------ 47

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            L + +     R +    +     +   W+ +  + +  S GD+L  +    D+T  +  
Sbjct: 48  SLSALLPGAPDRPRPGLALLTPAGEGHRWLEVTCQRLDASGGDLLYRVA---DVTAWRDR 104

Query: 526 LEGILCNAFQDNL 538
                  A  D L
Sbjct: 105 ELEATHEA--DAL 115


>gi|30249861|ref|NP_841931.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC
           19718]
 gi|30180898|emb|CAD85820.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas
           europaea ATCC 19718]
          Length = 616

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/455 (25%), Positives = 221/455 (48%), Gaps = 29/455 (6%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A+ D +TG+PNR      L           + +  +M ID+D +K+IND LG   
Sbjct: 146 RINTLAYTDAVTGLPNRAVVSHVLDLA-ARMRGSADCKGALMFIDLDGFKRINDTLGHEG 204

Query: 588 GDDVLVSLTRR----------------------IGELLKFPDILARLSGNRFGIILISEN 625
           GD++L  ++RR                      + +      + AR +G+ F  I+  E 
Sbjct: 205 GDELLRQVSRRVIEKGFNLTRGQIENCTTAFGELRQTCPEKLVFARFAGDEFVAIMPGEF 264

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   +  +A  + K++  P  + + E+ + ASIG A  TS      ++L NA++AMY AK
Sbjct: 265 HRRVLEKYAADILKAVNEPFLVSDNELRIGASIGIARVTSDSDDPRQLLINADIAMYSAK 324

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F  S  +   +R  I+ DL  A+E   L + Y P +     ++ G+EAL++
Sbjct: 325 ESGKNQYRFFDESLKNIAVERSQIEADLRKAIEEDMLDMHYQPKLNAQTLQVTGVEALVR 384

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G I  + F+ IAE+  ++ A+   +L  +AR   +W++     P+ I +N+++ 
Sbjct: 385 WKHPQKGAIPPARFVGIAEQCGLMPALGTNILRMVARQARAWQEVG--MPMPIAVNVSAV 442

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               + +   + A++ +    P  I++  +ES++M +   ++  L +LR+ G  +++DDF
Sbjct: 443 QFERSGIANEILAILEQHAVDPLLIEIELTESMIMSDFATAKSRLEQLREAGAQISIDDF 502

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L  L ++PF+ +K + SL+       K  AI+ +I+ M  ++   ++A+ +   
Sbjct: 503 GTGYSNLYQLSHLPFNVLKIDKSLVDDIGKNSKSEAIVTAIVQMVHSLGHRVVAEGVETH 562

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                L +  CD +Q      P+  + +++ + + 
Sbjct: 563 EQYAFLRKARCDQVQGYLFGRPMPAHELIEWVSDH 597


>gi|304311703|ref|YP_003811301.1| predicted signal protein [gamma proteobacterium HdN1]
 gi|301797436|emb|CBL45656.1| predicted signal protein [gamma proteobacterium HdN1]
          Length = 936

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 221/438 (50%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+    E +   A  D LT +PNR+   + +   +          P +M++D++++K +N
Sbjct: 489 ERLAVQEKLQFAADNDPLTRLPNRRKLHEVVRNAITRWQPGSERGPILMLLDLNRFKDVN 548

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D LG  +GD +L+ +  R+  +L+    +L+RL G+ F I+             A  +  
Sbjct: 549 DTLGHHIGDQLLIEVGLRLQSVLENYHALLSRLGGDEFAILAEQIKGLEDAHKLADEISA 608

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
            +  P ++ E  ++++AS+G A +      S  +L+ A++AMYHAK    G  V      
Sbjct: 609 VLNQPFHVGEIMLSLSASLGIAFYPQHGRDSHALLRGADVAMYHAKQNHVGFAVYHPSQD 668

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +    R+ +  DL  A+   ++ L + P + +   + +G EAL +W HP  G I  +EF+
Sbjct: 669 AHTPRRLRLMTDLRRAIRERQIVLHFQPKLDVESGQCIGCEALARWFHPDLGLIPPAEFI 728

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  ++L++ E     I  W  +     + + +N++++DLL+    E +  LI
Sbjct: 729 PLAEMNEVIHELSLYVTETALDQITEWDKRGLH--LSVAVNLSARDLLNLSFTERLCELI 786

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                S  R+++  +ES ++ +PER    L RL + G+  ++DDFGT  S L+YL  +P 
Sbjct: 787 EIRGISSERLEIEITESALIHDPERVLDTLHRLSQHGVRFSIDDFGTGYSSLAYLKRLPI 846

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +      E+   I++SII +A N+   ++A+       ++ LT++ CD +Q
Sbjct: 847 NALKIDASFVQDMMTNEQDEIIVKSIISLAHNLGMQVVAEGAENRAVVERLTQLRCDMVQ 906

Query: 937 DSHVASPLGFNSILKLLK 954
             +++S L    +   L+
Sbjct: 907 GFYISSALPTEQLESWLR 924



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 43/152 (28%), Gaps = 9/152 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +  +++       +    ER    +  S D +  W      +        + G +   +
Sbjct: 199 SVADLISQISMFHRLRESDERNRTLLDLSRDAIVTWQ-DGRHIDCNHTAEVLFGASRAEI 257

Query: 446 HGPIRNWLPYIHIND----RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                + L      D         + +++ +        +  R    D +     + IR 
Sbjct: 258 LNSTPSELSAAVQLDGQASEPAANSHIEAALRGEPQFFPWLHR--RKDGRNFEAEVSIRR 315

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              S G  L    I  D+T + +    I   A
Sbjct: 316 TETSTGFCLH--AIIRDVTARNRLDRAIRMIA 345


>gi|323225154|gb|EGA09402.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 510

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   ++    ++ +D+D +K +ND  
Sbjct: 63  QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ESTSFALLFMDLDGFKAVNDAY 121

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 122 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 180

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 181 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 240

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 241 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 300

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 301 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 359

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 360 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 419

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 420 KIDRAFVHELSEASDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 479

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 480 LGKPRTAEEIARDIRDPANIFTRS 503


>gi|331019835|gb|EGH99891.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 426

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/411 (30%), Positives = 220/411 (53%), Gaps = 7/411 (1%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             RL + L  S    +L   V+ +D+D++K IND LG  VGD +L  +  R+ E L+  D
Sbjct: 1   ESRLQSALLHSEESGSL-GAVLFLDLDRFKHINDSLGHPVGDLLLKGIAHRLKETLRDID 59

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +ARL G+ F ++L            A  +    + P    E E+ ++ SIG   + +  
Sbjct: 60  TVARLGGDEFIVLLPGLLQPSDAKAIANKLLACFSTPFEAGEHELYISPSIGSCVFPTDG 119

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYH 725
              + ++KNA+ AMY +K +G N VES+        S+R+ ++++L  A++ ++L L Y 
Sbjct: 120 TDVATLVKNADAAMYRSKAQGRNRVESYTRDLTEQASERIALEQELRRALDRNQLSLAYQ 179

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P I L+ + +VG EALI+W HP +G +    F+ +AEE  MI  I  ++LE+  R + +W
Sbjct: 180 PKISLLTQTLVGAEALIRWSHPTFGEVPPEHFIPLAEENGMILQIGDWVLEQACRQMGAW 239

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           R     P   + +N+A   L    L E ++ L++     P  ++L  +E+ +M   + + 
Sbjct: 240 RK-TCTPFGPMSVNLAGAQLRQPNLVERIEQLLTDNGLVPDCLQLEITENFIMSQTQDAL 298

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
            +L +L+++G+ L +DDFGT  S LSYL  +P D +K + S + G  E     AI+R+II
Sbjct: 299 AVLHKLKQLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDQSFIRGLPEDTHDAAIVRAII 358

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
            + ++++ T+IA+ +      + L+  GC+ IQ   ++ PL  +    + L
Sbjct: 359 ALGRSMQLTVIAEGVETHEQQQFLSEEGCEQIQGYIISLPLQPDEFSERFL 409


>gi|317130908|ref|YP_004097190.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475856|gb|ADU32459.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
          Length = 886

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 234/438 (53%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +KS E +   A+ D LTG+PNRQ F   L ++L   A        VM +D++++K+IND
Sbjct: 451 LQKSEEKLQKLAYYDMLTGLPNRQHFQKYLESLLQSEANKKAPTIAVMFVDLNQFKQIND 510

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD++L  ++ ++ +L K    + RL G+ F I+L  E +  ++  F   +++  
Sbjct: 511 TLGHKVGDELLKLVSNKLMKLEKEKIKVFRLGGDEFVIVLT-EADKKEVKRFGGKLQRLF 569

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A PI L    + VTAS G + +     T   +++ A++AMY+AK +G N+++ F  S   
Sbjct: 570 AEPIILNNMSLYVTASFGVSMYPKDGDTLDRLVRFADMAMYNAKEKGRNYIQFFDQSMKA 629

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+MI   L  A+E ++  L Y P +    +E+ G+EAL++W HP+ GN+S  +F+ 
Sbjct: 630 DFSERMMINNGLREALERNQFELHYQPKVNAKTDEMSGMEALMRWHHPELGNVSPGKFIP 689

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  I+ + L +  +    W+D      + + +NI++K      L E ++  ++
Sbjct: 690 IAEESGLILKIDEWGLLQACKQNKQWQDAGLK-KVPVAVNISAKHFYHGYLSEMVKRALT 748

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +      +++  +ESV +   +     L  L+++G+ +++DDFG   S L+ L  +P  
Sbjct: 749 ISGLEAQYLQIEITESVFIKKMDDVIHTLNGLQEMGVKVSIDDFGNGFSSLNQLLKLPIS 808

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +   +      EK+ ++++ II +A +++  ++ + +  E ++  L +  CD +Q 
Sbjct: 809 EVKLDREFIRNIGENEKQASMVKVIIELAHSLQLNVVGEGVETEDELALLQQYHCDELQG 868

Query: 938 SHVASPLGFNSILKLLKE 955
              + P+  + + +LL+ 
Sbjct: 869 FLFSKPVQASELKQLLQR 886


>gi|312960659|ref|ZP_07775165.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
 gi|311285185|gb|EFQ63760.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens WH6]
          Length = 698

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 115/432 (26%), Positives = 209/432 (48%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LTG+PNR    DR+   +     +      +M ID+D +K +ND  
Sbjct: 254 QANQELTHLALHDMLTGLPNRTLLADRIQQAMQAVKEEGGC-FALMFIDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L  +  R+ E L+  D LAR+ G+ F  +L+  +        A      I  
Sbjct: 313 GHHMGDQLLREVGLRLREDLRSHDTLARIGGDEFV-LLVQLSQPDDALGLAERQVVMINR 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
              + E E+ ++AS+G A +  +     E+L NA+ AMYHAK+ G N    F   +++  
Sbjct: 372 AFQVAEHELNISASVGIALFPGNGGNPQELLMNADAAMYHAKNMGKNGYSFFDASMNTNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ + +DL  AV+  +L L Y P    +    VG EAL++W+HP+ G +  + F+ +A
Sbjct: 432 RKQLQLLQDLRNAVQQQQLRLYYQPKFDAVSGLPVGAEALLRWEHPQQGLLLPAAFIELA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L    R +  W  Q       I +N+++       L + + A + + 
Sbjct: 492 EKTGLIIPIGEWVLNEACRQMSLWYAQ-GYQGWRIAVNLSALQFCHAGLVKSVAAALHRH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +ES  M + + S  +L  L  +G+ L++DDFGT  S L YL  +P + +
Sbjct: 551 RLPANSLTLEITESTAMSDADASMTVLQELSDMGVDLSIDDFGTGYSSLMYLKRLPANEL 610

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          AI+ +I+ + + +   I+A+ +  +   + LTR+GC+ +Q   
Sbjct: 611 KIDRGFVRDLEHDGDDAAIVSAIVALGQALGLRIVAEGVETDAQQRFLTRLGCNALQGYL 670

Query: 940 VASPLGFNSILK 951
           +  PL     + 
Sbjct: 671 LGHPLPAEGFIA 682


>gi|291296544|ref|YP_003507942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Meiothermus ruber DSM 1279]
 gi|290471503|gb|ADD28922.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Meiothermus ruber DSM 1279]
          Length = 831

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/569 (22%), Positives = 243/569 (42%), Gaps = 19/569 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSM 445
           +   +      + +          +    D V  +D     +   P     LG      +
Sbjct: 271 LSLAIDRAQVYEALREQEAIYRTLMETLPDAVALYD-GSKVLYLNPVGLRGLGYERLEEV 329

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G       ++H +        +   +G  R  L+ E R+   D +   +  +   +  +
Sbjct: 330 VGQPLT--KFVHPDSLPRVAERVQRILGGERDGLE-EVRLVTRDGRVLEVEAQGVRVQIA 386

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +  + +    D+ E+K+    I   A+ D LT +PNR+     +   + ++       
Sbjct: 387 GHE--QVLISIRDVGERKRQQARIEYLAYHDPLTDLPNRRKLWA-VAESIFVADRRKRET 443

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
           P ++ +D+D +K +ND LG  VGD++L  L  RI   L+  D+LAR+ G+ F ++L S  
Sbjct: 444 PALIYLDLDNFKLVNDTLGHQVGDELLRQLALRIKGTLRQDDLLARMGGDEFAVLLPS-A 502

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A  + +    P NL E  +   AS+G A +     T  E+ + A++AMY AK
Sbjct: 503 DRNSAMAAARRIVEVFDHPFNLGEHVLHARASLGVALYPEHGQTLDELARAADVAMYQAK 562

Query: 686 HRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  V          +R+   + L   ++     + Y PI+ + +  I   EAL++W
Sbjct: 563 QAQTQVAVYDPAQDINSLERLETIQRLRKTIQEGRFLIQYQPILNIAERYINKWEALVRW 622

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP  G +  +EF+ +AEE  +I  ++L +L++  +D      +       + IN ++  
Sbjct: 623 EHPTRGLLRPAEFVPLAEESGLIGELDLAVLKQAVQDQKRLGGE-------LTINFSAVT 675

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L        +   +      PS + L  +ES ++   ++    L  LR +G+ + LDDFG
Sbjct: 676 LAHPNWVREVVRALVDEALQPSLLWLEITESALLPERQKWLGGLVALRGLGVRVALDDFG 735

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S L++L  +P D +K + S +   G ++    ILR+++ +A       +A+ +    
Sbjct: 736 MGYSSLAHLKQVPVDLIKIDKSFVAEIGLSQTSEDILRAMLQLASAFGLKTLAEGVENRT 795

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++ L R GC Y Q  ++  P+     ++
Sbjct: 796 QLEWLARHGCHYAQGYYIGLPVAVEQAVE 824


>gi|157375190|ref|YP_001473790.1| putative diguanylate phosphodiesterase [Shewanella sediminis
           HAW-EB3]
 gi|157317564|gb|ABV36662.1| putative diguanylate phosphodiesterase [Shewanella sediminis
           HAW-EB3]
          Length = 722

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 247/584 (42%), Gaps = 39/584 (6%)

Query: 391 LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           LA    ++  +   E+ +L   A   S  I    ++  D +         I G +   + 
Sbjct: 158 LALTLATRNAYEKDEKLTLFLSAAEQSEQISMLVNLHTDIIEYVNQAHEEISGASKKQVI 217

Query: 447 GPIRNWLPYI--HINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMS 503
           G     L ++  H          + +    R G+    + ++   D   +W+   ++   
Sbjct: 218 GRSFKHLDFVKQHPE------QAMVTLAKVREGKFAKGDCKITRKDGSTYWLRYSVKQFI 271

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G+    +  A D +E+ +    +   A+   LTG+ NR  F   L            
Sbjct: 272 TERGNHFALVN-AEDCSEEVRYQSELERLAWHCGLTGLYNRTYFNRELEK---------T 321

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIIL 621
            +  +++ID+  +K+ ND  G   GD +L+ + RR+     +   D +AR+  + F IIL
Sbjct: 322 TKGQLILIDLCGFKRFNDTYGHESGDILLIEVARRLKHFANVNHTDQIARVGSDEFAIIL 381

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM---LKNAE 678
             E +   +      + + + MP+ +    I    ++          +  E+   L  A+
Sbjct: 382 P-EQSEADMEYIIARLYRQLIMPVTIGREHIDPKPALAIV----DINSVEELFLPLACAD 436

Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+ +AK + G+ ++ F  +  +   D   I+ DL  A+   E  L Y P+  L  +  +
Sbjct: 437 IALQYAKKKQGDTIQIFNNALLNAFKDNSQIERDLQTALRGREFELYYQPLKDLQKKAYI 496

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HPK G +    F+ IAE+  MI AI  ++LE   R +  W+       I +
Sbjct: 497 GAEALIRWHHPKKGVLYPGAFIDIAEQTGMINAIGSWVLEAACRQLNLWQHH--KIDISM 554

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      L E +  L+++    P  + L  +E+ +M + + +  L   L ++G+
Sbjct: 555 HVNVSARQFFSGNLYEQVWQLVTRYRLKPGTLILEITETELMEDIKNATKLCQELSELGV 614

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  +  ++ 
Sbjct: 615 GLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTISRESREIVSAIIAMASALNISLT 674

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           A+ +  +     L+   C   Q    +  L  +   + L +  P
Sbjct: 675 AEGVETQEQESFLSDHKCHQAQGFLYSPALRESEFSRFLFQAEP 718


>gi|312966782|ref|ZP_07781000.1| protein gmr [Escherichia coli 2362-75]
 gi|312288246|gb|EFR16148.1| protein gmr [Escherichia coli 2362-75]
          Length = 632

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 74  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 127

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 128 FKLFMSRREAAASRRNNRVFFRGGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 187

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 188 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 244

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 245 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 303

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 304 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 363

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A++N +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 364 CVFTPEMNQRVFEYLWLDTNLRKALKNDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 422

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 423 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 480

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 481 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 540

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 541 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 600

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 601 KNGINERQGFLFAKPMPAVAFERWYKRYL 629


>gi|21231712|ref|NP_637629.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768162|ref|YP_242924.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113414|gb|AAM41553.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573494|gb|AAY48904.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 705

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 229/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L  + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLHTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+  + RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFSSRISRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + +L  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVTLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDANDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I  S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIPPSTFIDIAEQSGLIEVIGPKVLRAACLEAAKWP--VVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +FI +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFISVNVSPRQLRSGDLIDTVAECLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIIGMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRDRGCDLGQGYWFSRPLSPADMVKLIAA 704


>gi|146295287|ref|YP_001179058.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408863|gb|ABP65867.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 509

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 218/438 (49%), Gaps = 7/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+   I   +F D+LTG+PN+  F   L   +  +    N +  ++ IDID   K+N+ L
Sbjct: 75  KNQAKIRELSFFDSLTGLPNKNHFQLVLEKAIKEAYL-KNQQLAIIYIDIDNLNKVNNTL 133

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  +  R+  ++     +ARL+G+ F IIL +  +   +  F          
Sbjct: 134 GHIAGDSVLKKIANRLKSVIADKGFVARLTGDEFAIILYNFIDIHLLDYFIRKFTSIFNK 193

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
           P  +++ E  +TASIG A + +    ++ +L+NA  A+  AK +G N    +     +  
Sbjct: 194 PWKIMDYEFYITASIGIAIFPNDGNDATTLLENAHKALNSAKEKGKNIFCFYNKEMDKAL 253

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            ++  ++  L  A+E ++  L Y PII L   +I G EALI+W HP+ G I    F+ IA
Sbjct: 254 QEQFELEWSLRKAIEQNQFKLFYQPIIDLKRMKICGAEALIRWIHPEKGFIPPLSFIPIA 313

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++ R   D+   +   N    ++ +N++ K+   +   + +   I+  
Sbjct: 314 EQTGLISKIGEWVISRSVSDLKEIKMAIND-SFYVSVNVSLKEFSTSNFVDNVLYSINSL 372

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+   +  +ESV M +P+++  +L  L++ GI + LDDFGT  S L+YL  +P D V
Sbjct: 373 KIEPTEFGIEITESVAMVDPQKTIGILNFLKERGIKILLDDFGTGYSSLNYLKQLPIDIV 432

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      +K   + +S+I ++  ++  ++A+ I  E   + L    CD+ Q   
Sbjct: 433 KIDRSFIQNMTYDQKEQKMAKSLIDLSHILDLKVVAEGIEDERQAELLKTFSCDFGQGYL 492

Query: 940 VASPLGFNSILKLLKERF 957
              P+    +L+ L +RF
Sbjct: 493 FGKPMPKEELLE-LAKRF 509


>gi|308048315|ref|YP_003911881.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
 gi|307630505|gb|ADN74807.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
          Length = 822

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 223/436 (51%), Gaps = 5/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PNR  F   L   L      D+ +  ++ +D+D++K++ND L
Sbjct: 366 RYTNELQRMAMMDALTGLPNRAMFHHELAKALGSIGRTDD-QIALLFLDLDEFKRVNDTL 424

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD++L ++  R+ + ++  D + RL G+ F II+    +   I      +  S+  
Sbjct: 425 GHDIGDELLKTVANRLQKSIRSMDTVCRLGGDEFTIIVRGLESEGDIHRIIHQIFTSLQQ 484

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P+ L    + +T SIG     +  +   E+LK A+LAMY AK  G ++   F        
Sbjct: 485 PLQLGRHTLIITTSIGVVFCDNPMMRPEELLKRADLAMYQAKQAGRSNYRVFNEQMLESA 544

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S R+M+++D+ +A++  +L L   PI+ + D  +VG EAL++W HP  G +  SEF+   
Sbjct: 545 SRRLMLEQDIRIALKERQLALAMQPILTMDDNRLVGFEALVRWYHPNRGLVMPSEFIQEV 604

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E      +  ++LE     +  +  Q      ++ +N++    +  +L + +Q L+ + 
Sbjct: 605 DESKEGVELGNYVLEYAIDLLARYTRQLGSDQFYVAVNLSPNQYMSADLVKYLQGLLERY 664

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PSR+ L  +E  ++ N +R+  ++ +L+ +G+ + +DDFGT  S LSYL  +PFD +
Sbjct: 665 RIHPSRLVLELTEESLIKNLDRAMAIMQQLKSMGVRIAIDDFGTGYSSLSYLKQLPFDLL 724

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +           I+ S+I +A N++  ++A+ +      + L ++GCDY Q   
Sbjct: 725 KVDRGFVADLDNSDVDRNIVTSVIDLAHNLKRQVVAEGVESHDQRQFLRQIGCDYAQGYL 784

Query: 940 VASPLGFNSILKLLKE 955
            ++PL  +    LL +
Sbjct: 785 FSAPLDEHQTQVLLAQ 800


>gi|315135924|dbj|BAJ43083.1| RNase II stability modulator [Escherichia coli DH1]
          Length = 632

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 74  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 127

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 128 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 187

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 188 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 244

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 245 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 303

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 304 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 363

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 364 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 422

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 423 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 480

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 481 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 540

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 541 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 600

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 601 KNGINERQGFLFAKPMPAVAFERWYKRYL 629


>gi|3659621|gb|AAC61688.1| c-di-GMP phosphodiesterase A [Gluconacetobacter xylinus]
          Length = 740

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 215/445 (48%), Gaps = 8/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  + E I   A  D+LTG+ NR S    +  ++  S  D N +  + ++DID+++ IN
Sbjct: 282 EQNATQEHISHLANFDSLTGLLNRSSVHKVIEGMI--SKQDGNRQFAIFMLDIDRFRDIN 339

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  L+ +  RI  + K   +L+R  G+ F +++    +     DFA  +  S
Sbjct: 340 DALGHVYADQFLIEIAARIRSIAKEDYVLSRSGGDEFVVVVPDCPHKE-ATDFAEHLLAS 398

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + MP+ + +  +T++ SIG +++  +   S  +L  A++A+  AK  G        +   
Sbjct: 399 MTMPMQIGQNTLTISCSIGISTYPDNGPDSESLLSTADVALRQAKEDGRGVFRFANLEKN 458

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 459 QVAQDRLVLGSALRDSLAKGMLNLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSRFI 518

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R I+ W       P  + +N+++    +  L E + AL+
Sbjct: 519 AVAEETGQIEAIGRWSLLEACRQIVKWDRDGIHVP-TVAVNLSAVHFRNRALPEHIAALL 577

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 PSR+ +  +ESV+M N   +  +L  +R IG  L++DDFGT  S LS L  +P 
Sbjct: 578 KDHNLKPSRLTVEITESVMMDNSRDTEEVLQSIRNIGCGLSMDDFGTGYSSLSRLTRLPL 637

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L ++ CD +Q
Sbjct: 638 TEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEKLNCDVMQ 697

Query: 937 DSHVASPLGFNSILKLLKERFPLVK 961
               A PL  +   K ++    + +
Sbjct: 698 GYLFAKPLAPDDFEKWMRHHQTIRQ 722



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 4/170 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDR 461
             E    A+  + D     D   + +      + + GL    + G   N L P +H    
Sbjct: 7   SAEVLISALEQAIDATVIIDDKNEVIFFNQAGSNLWGLDKKDVLGKNVNVLVPTLHQAGH 66

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D F          R      E     +D ++    + +  + N +  I  ++G+  ++T 
Sbjct: 67  DAFVERSRGSSHNRIVGTSREVEFTRSDGEYICGELSLSKVVNDDKRI-FFMGVMKNVTN 125

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +  S +  +     D L  + +     D    +     +       V+++
Sbjct: 126 E--SQQRKILILQNDVLQALASDMMIQDVADLLCRRVESFVPGTVAVLML 173


>gi|90422017|ref|YP_530387.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104031|gb|ABD86068.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 573

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/447 (27%), Positives = 209/447 (46%), Gaps = 11/447 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            A DIT+           A  D LTG+ NR  F +RL+ IL  +         ++V+D+ 
Sbjct: 128 TAGDITDHLAERAREAEAARTDRLTGLGNRLMFRERLSKILGEADLAGGA--AMLVVDLG 185

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +N+ LG  +GD +L  + +RI   +   D++ARL  ++FGII      +      A
Sbjct: 186 RFKALNESLGHKIGDALLGLVAKRIRSAVGAGDVVARLEADKFGIIQTGRPQAQSADALA 245

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           I +   I     L  + I V ASIG    +     +  ++KNA+LA++ AK  G      
Sbjct: 246 IRLVDLIGRSYLLDGQLINVAASIGVVLLSDGVDDADNVMKNADLALHRAKKDGHGSYHF 305

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   +      R  ++ DL  A+   E  LVY P + L    + G EAL++W  PK G +
Sbjct: 306 FESAMDERMQARRKLEIDLRRALALREFALVYQPQVNLKSNTVTGFEALLRWQCPKRGAV 365

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ +AEE  +I  I  ++L     +   W      P + + +N+++    D  L  
Sbjct: 366 SPLDFIPLAEETGVITPIGEWVLRTACCEAAKWP-----PELSVAVNVSAVQFADPNLVS 420

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + + ++ +   P R++L  +ESV++     +  +L  LR +G+ + LDDFGT  S L Y
Sbjct: 421 TIISALADSRLDPRRLELEITESVMLDARGTALAVLQTLRTMGVRVALDDFGTGYSSLGY 480

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K + S + G+       AI+R++  +  ++    +A+ +     +  +   
Sbjct: 481 LRSFPFDKIKIDQSFVRGTSNDPAGQAIVRAVAALGHSLGMATVAEGVETAEQLARVAAD 540

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GC  +Q    + P+    I   L  R 
Sbjct: 541 GCTEVQGYFFSRPIAPERIEGFLSTRN 567


>gi|241203897|ref|YP_002974993.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857787|gb|ACS55454.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 633

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 139/572 (24%), Positives = 253/572 (44%), Gaps = 27/572 (4%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRN 451
              S+      E   + +      +  +D  +    +      +  L    +     I +
Sbjct: 63  SALSKAFDGQKELFEIILNNLPLGLSVFDSDQRLTLSNTRFRQLFDLTDEDVIAGATIAD 122

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-----SN 506
               +             +  G R GR        ++  +  W++   R + +     S+
Sbjct: 123 LTAKM------RGTESASAKPGRRTGRHSSATARSSSLRRREWLMDDGRIIQSMVTILSD 176

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G     I I  DITE +++ E I   A  D LTG+PNR  F +++   L       + + 
Sbjct: 177 GSN---ISIHADITEDRRAAERITYLAHHDPLTGLPNRIHFREQVDATLTE--RRPDQQI 231

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +++D++K IN+ +G++ GD +L+ +  RI       + LARL  + F I+      
Sbjct: 232 ALVHLNLDRFKSINNTMGVSAGDKILLQVAERIRASAGSENTLARLGSDEFAILQTGRQQ 291

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +   A  +R+ ++ P    E+++ ++ S+G A        +  +LKNA +A+ HAK 
Sbjct: 292 PRNVTALAERIRRELSKPFLHGEKQVELSVSMGIAIAPEDGEETDILLKNAGVALSHAKA 351

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      F        ++   ++ DL  AVEN E  L Y P+  L+   I G EALI+W
Sbjct: 352 DGRKRERFFASEMEAQIQLRHALEADLRAAVENEEFELHYQPLYDLVQRRICGFEALIRW 411

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP  G +   +F+ +AEE+ ++  I  ++L R   D   W +      I I +N+++  
Sbjct: 412 NHPARGRVPPMDFIPLAEEVGLVVDIGRWVLHRACNDAAQWPE-----GIKIAVNVSAIQ 466

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
              ++L   +   ++     PSR++L  +ESV+M N      +L  L++ GI +++DDFG
Sbjct: 467 FSSSDLTRDVSEALAAAALLPSRLELEITESVLMENLSDVLPILHALKERGIRISMDDFG 526

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   PFD +K + S +      ++  AI+ +II +   +   +  + +    
Sbjct: 527 TGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAHAIMHAIILLGDALGMRVTVEGVETAA 586

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  L    CD IQ  H++ P     +  LL 
Sbjct: 587 QLALLECEECDEIQGYHISPPRPARDVPHLLS 618


>gi|254787843|ref|YP_003075272.1| PAS sensor diguanylate cyclase/phophodiesterase [Teredinibacter
            turnerae T7901]
 gi|237684656|gb|ACR11920.1| PAS sensor diguanylate cyclase/phophodiesterase [Teredinibacter
            turnerae T7901]
          Length = 1416

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/595 (20%), Positives = 240/595 (40%), Gaps = 16/595 (2%)

Query: 367  IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
            + P +    V    ++ F  + ++  +    + +  +  +    +    + V   +    
Sbjct: 815  VSPYINASHVFDGYIVIFYDMTNLTRS---KEALAFEKFQAQKTLELVAEGVIRLNTRGT 871

Query: 427  RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFR 484
                 P    IL  +   +          ++     +F     +   +      +     
Sbjct: 872  VEYINPAALKILCKSHDEIAFQRLASEISLYDEVGGSFSLEQFVQRCLQSNESFVVENNP 931

Query: 485  VRAADNQFH--WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            +          ++ + I P+  S+ D+   I    D +E+ + LE +   +  D+LTG+ 
Sbjct: 932  LLIHTGSETANYIELSIVPLQLSD-DVRGCIITLRDTSERHRQLERLKWQSTHDSLTGLV 990

Query: 543  NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            NR+    RL   +  S   + +  +++ +D+D++K IND  G   GD +L  L + I ++
Sbjct: 991  NREEMEKRLERAIATSRR-EGIESSLLYMDLDQFKVINDTCGHLAGDQLLKQLAQLIRDM 1049

Query: 603  LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
            L+  D  ARL G+ F I+L         A      +K         ++   V  SIG   
Sbjct: 1050 LRTRDTFARLGGDEFAILLDHCPILEAEAIAQKIKQKVCDYRFAWEDKAFRVGVSIGIVG 1109

Query: 663  WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENS 718
               S    S++L +A+ A Y AK  G N ++     +   +   ++     D+  A+E+ 
Sbjct: 1110 IHPSVSQLSQVLSDADAACYAAKEAGRNCIQIHTQDNKVLEAQRLQMRSISDINQAIESD 1169

Query: 719  ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
               L +  I  +    I   E LI+  +     +  S F+  AE   +I  I+ +++E  
Sbjct: 1170 HFRLYFQQIHAVGSGAIQSWEILIRMFNATGEFLLPSHFLPAAERFGLINRIDTWVMESA 1229

Query: 779  ARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R++  +  Q       +   N++   + D    + +  L ++  Y  ++I    +E+ V
Sbjct: 1230 LRNVAQYFGQGKERDFPLLSFNVSGATISDPAYLDLVSELFTRYQYPANKISFEITETSV 1289

Query: 838  MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
            + N  ++   + R R++G  L LDDFGT  S LSYLG +P D VK + S +         
Sbjct: 1290 VRNLVKASEFMRRARELGCKLALDDFGTGLSSLSYLGELPVDRVKIDMSFVKNIVDNPVN 1349

Query: 896  IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             AI+ S+  +A  ++  ++A+ +     +  L  +G D  Q      PL F   +
Sbjct: 1350 RAIVNSVKEVAHLLKLEVVAEGVETPAQLACLRELGVDAYQGFLAGKPLPFEEFV 1404


>gi|300718335|ref|YP_003743138.1| periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia
           billingiae Eb661]
 gi|299064171|emb|CAX61291.1| Periplasmic sensor diguanylate cyclase/phosphodiesterase [Erwinia
           billingiae Eb661]
          Length = 717

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 115/427 (26%), Positives = 209/427 (48%), Gaps = 12/427 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR +   +LT  L   +  +     ++++D+D++K IND  G 
Sbjct: 290 EAQAQQLALHDVLTGLPNRAAMEQQLTQRLSNLSA-EGENIGLLLLDLDRFKMINDTYGH 348

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GDD++V + +R+  LL+  D + RL G+ F +++    +  +I      +   +  PI
Sbjct: 349 HTGDDLIVEIGQRLSALLRPEDAVGRLGGDEFVVVVNHLQDDRQITALCQQIIACLTTPI 408

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
            L    + V  SIG A          E+++ A++A+Y AK  G      F          
Sbjct: 409 TLQGNRLWVGVSIGIALAPQHGTERQELMRKADIALYAAKAEGRGRYHMFVPALDDALIK 468

Query: 704 RVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           R  + E+L LA+EN   L L Y PI+ +   +++G+EAL++W HP  G +S ++F+ IAE
Sbjct: 469 RQQLAEELRLALENTCGLALWYQPIMDISGTKMLGIEALLRWQHPTLGPVSPADFIPIAE 528

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L++  +   +       P + + IN++    L  +    +  ++ +  
Sbjct: 529 ETGLIIPLGDWVLQQAVKRAKTC------PHLKMSINVSPLQFLAGDFIARVNEIVQQHD 582

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P +I+L  +E V++ + +++   +  LR  G S+ LDDFGT  S LSYL   P DT+K
Sbjct: 583 VNPRQIELEVTEGVMLEDKQQALHTIQTLRAAGFSIALDDFGTGYSSLSYLTQFPVDTLK 642

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +       G   +   I+ S+I +  ++  ++ A+ +  E     L   GCD +Q   +
Sbjct: 643 IDRCFTQLLGIQAQANTIVSSVIKLGHSLGLSVTAEGVETEEQRLALAAAGCDKLQGFLL 702

Query: 941 ASPLGFN 947
           + P   +
Sbjct: 703 SRPQPAD 709


>gi|153206889|ref|ZP_01945707.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|120576962|gb|EAX33586.1| diguanylate cyclase (GGDEF) domain/cyclic diguanylate
           phosphodiesterase (EAL) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
          Length = 432

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/433 (27%), Positives = 223/433 (51%), Gaps = 7/433 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A +D LT +PNR+ F+ RL   +       + + +++ +D+D +K IND LG  +GD V
Sbjct: 1   MASRDQLTSLPNRREFIHRLNEEIGKPK-SVDSKLSLLFLDLDNFKDINDALGHHMGDRV 59

Query: 592 LVSLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           LV ++ R+ +L        L  L G+ F I+L            A  +  + +    +  
Sbjct: 60  LVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDLQQDKDATLCAKKISNAFSESFKIKN 119

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707
             + V  SIG      SK  S  +LK A++AMY AK +G N    +          R+++
Sbjct: 120 FLLYVNFSIGITIDFYSKTDSETLLKKADMAMYQAKKKGRNTFSFYTEKLGERYRHRLIL 179

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +     A+E ++ YLVY P   L  ++I G+E L++W HP+ G IS  +F+ IAE+  +I
Sbjct: 180 ENAFHQALEENQFYLVYQPQYELSTQKIRGMETLLRWKHPELGEISPEDFIPIAEKAGII 239

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L    +    W+ +  +  I + IN++   L+  +    +  ++ +T   P+ 
Sbjct: 240 IPIGEWVLRHACQQYKQWQSKIPVGEIKLSINVSPPQLIRKKFANSVAHILKETNTPPNV 299

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I+L  +E+ +M     ++ +L  LR+IG+++ +DDFGT  S L+YL  +P DTVK + + 
Sbjct: 300 IELEITENSLMTKLNSAKKVLEELREIGLNIAIDDFGTGHSSLAYLKILPIDTVKIDKAF 359

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G    +   AI++ +I +A+++  T I + +  +  ++ L ++G   +Q ++ +  + 
Sbjct: 360 VRGLPDDQHDTAIVKFVIDLARSLNLTTIVEGVEKKEQMEFLLKLGGPLVQGNYFSKAIE 419

Query: 946 FNSILKLLKERFP 958
            + + KLLK + P
Sbjct: 420 ADLMFKLLKNQSP 432


>gi|323185551|gb|EFZ70912.1| protein gmr [Escherichia coli 1357]
          Length = 605

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 47  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 100

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 101 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 160

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 161 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 217

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 218 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 276

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 277 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 336

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 337 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 395

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 396 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 453

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 454 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 513

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 514 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 573

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 574 KNGINERQGFLFAKPMPAVAFERWYKRYL 602


>gi|264677517|ref|YP_003277423.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262208029|gb|ACY32127.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 728

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 218/442 (49%), Gaps = 11/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR----PTVMVIDIDKY 576
           + + +   +   AF D LT +PNR  F DRL   L      +  R      ++ +D+D +
Sbjct: 270 KLQLANTELRQRAFADPLTNLPNRLLFEDRLIHALLRLERANRSRTKERLGILFVDLDGF 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD +LVS   R+    +  D +AR+ G+ F ++L    +       A  
Sbjct: 330 KPINDSFGHAAGDQILVSAAERLMAEARSSDTVARVGGDEFLVLLEDTQDVAACMAVANR 389

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K+++ P  L  +E+ +T SIG  ++         ++ NA+ AMY AK  GGN    F 
Sbjct: 390 ILKALSQPFRLGNKELQITCSIGIVAFPDHG-DRDHLIANADAAMYAAKRNGGNGFAVFE 448

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  S+++ ++ DL  A++  ++ L Y P I      I+G+EAL++W HP+ G I+ 
Sbjct: 449 PHMGSDASEQLELQNDLRHAIQRGQMELHYQPKIDSERGNIIGVEALLRWAHPERGMIAP 508

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I ++  +++E   R +  WRD      + + IN++   L ++ L + +
Sbjct: 509 DIFIPLAERFGIINSLGNWVIEEACRQLALWRDMGLQ--MRVAINLSVHQLRESGLADRI 566

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +     S++    +ESV M + + ++  +  LR IGI L++DDFGT  S L+YL 
Sbjct: 567 TQTLLRHDVQASQLLCEITESVAMEDTQATQRAIEELRDIGIFLSIDDFGTGYSSLNYLR 626

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +      E   A++ +++ +A  +   ++A+ +        L  M C
Sbjct: 627 QLPAQQLKIDRSFIRDLETEEDARAVVHAVVRLAHALGLRVVAEGVETAGQRDILIDMQC 686

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
           D +Q    A P+  +S+L   +
Sbjct: 687 DELQGYFYARPMPADSLLAWAR 708


>gi|194437128|ref|ZP_03069227.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 101-1]
 gi|253773714|ref|YP_003036545.1| RNase II stability modulator [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254161365|ref|YP_003044473.1| RNase II stability modulator [Escherichia coli B str. REL606]
 gi|194424111|gb|EDX40099.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli 101-1]
 gi|242377064|emb|CAQ31790.1| modulator of RNase II stability [Escherichia coli BL21(DE3)]
 gi|253324758|gb|ACT29360.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973266|gb|ACT38937.1| modulator of Rnase II stability [Escherichia coli B str. REL606]
 gi|253977480|gb|ACT43150.1| modulator of Rnase II stability [Escherichia coli BL21(DE3)]
 gi|323962503|gb|EGB58084.1| EAL domain-containing protein [Escherichia coli H489]
 gi|323973472|gb|EGB68658.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 661

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +   A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNFRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|117920751|ref|YP_869943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117613083|gb|ABK48537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 752

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 127/685 (18%), Positives = 264/685 (38%), Gaps = 34/685 (4%)

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +L   + + P+    +         +       + G +     +   P W     + +  
Sbjct: 72  LLTGAAPHLPVSYNQVIHGVEIGPGVGSCGTAAFTGQRVIVDDIEHHPYWAPYKEFALTH 131

Query: 355 WMAITKRLDNDIIQPALVGGLVL------IVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
            +           Q  ++G   +      +      T+I         +       E Q 
Sbjct: 132 GLRACWSEPIKDTQGKVLGTFAMYYETVKVPTAADLTLISEAARLASLAVERSRSLEFQR 191

Query: 409 LAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHINDRDN 463
           LAV         +   +     +        ++     +        ++      ++   
Sbjct: 192 LAVKIFDRLPLSLVITNASHSVLYANDAFTQMV-YPKTTDIHDFCPEHFFS---PSEPHE 247

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             ++       +    Q E      + +  ++ + +      + +   +  + +DI+E+K
Sbjct: 248 IDSLFQHLSEGK--MWQGELIGLRNNGETFYLDLTVTVFREPHSNENSFAWLFSDISERK 305

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ + I   A  D LTG+ NR +   ++  ++   +       + M++D+D +K++ND  
Sbjct: 306 KAAQLIKYQANNDPLTGLANRNALFRQIQELISADSLTPG--FSFMLMDLDNFKQVNDTY 363

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV +  +I   L    + ARL G+ F ++L       +++  A  + K +  
Sbjct: 364 GHDKGDALLVQVVEQIKTCLNEQAVFARLGGDEFALLLPGLVTQRELSQLADKINKRVYQ 423

Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              L  ++ +  + SIG A +    +   ++L  A+ AMY +K  G N    F     ++
Sbjct: 424 RYELSHDKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKADGRNRYHFFTEQMQQN 483

Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +   L  A+E     L + PI+      +   E L++W H +   IS  EF+ I
Sbjct: 484 AERIANLHTLLKQALEQEAFELYFQPIVDATTGLVQRAEVLLRWQH-EGQFISPDEFIPI 542

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL----LDNELCEGMQA 816
           AE   +I  I  ++ + + + II  +      PI + +N+++ +     L +  C+    
Sbjct: 543 AENSGLIVNIGRYVRKAVMQTIIDMQ--VLGWPINLAVNVSTFEFWSHELQDAFCDSFAD 600

Query: 817 LISKTLY---SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +I +          I L  +ES++M        +L  LR  GI ++LDDFGT  S LSYL
Sbjct: 601 IIEELGLIEFPYELITLEITESLLMKQHVHLIQVLNELRGRGIKISLDDFGTGYSSLSYL 660

Query: 874 GYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K + S +    E     A++ +I+ ++  +  ++ A+ +  +  +K +    
Sbjct: 661 ANFPIDQIKIDKSFIDRLDEGERHLALIEAIVRLSHALNLSVTAEGVETQAQLKVMMENH 720

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
              IQ      P+   +  +LL E+
Sbjct: 721 IQEIQGYIFYKPMPKAAFFELLAEQ 745


>gi|328542950|ref|YP_004303059.1| Cyclic diguanylate phosphodiesterase domain protein [polymorphum
           gilvum SL003B-26A1]
 gi|326412696|gb|ADZ69759.1| Cyclic diguanylate phosphodiesterase domain protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 677

 Score =  445 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 214/427 (50%), Gaps = 10/427 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +Q K+ + I   A  D LTG+PNR  F  RL   L L+    +    V++ID+DK+K IN
Sbjct: 237 DQVKTNQDIAFLAHHDPLTGLPNRAVFSARLNEALRLAHAKAS-NIAVILIDVDKFKAIN 295

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD  L  +  R+  +     +++RLSG+ F +++ S ++  ++   A  M  +
Sbjct: 296 DTYGHGTGDIYLQVIADRLRAVFGDH-LVSRLSGDEFAVMIGSVSDVARLTRLAAEMISA 354

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
              P  +  +EI ++ S+G A  T     SS +L  A+LA+Y AKH G +    +     
Sbjct: 355 TKAPCIIDGKEIPISLSLGIARATDGSWRSSRLLHCADLALYKAKHSGRSMFVWYTPEMD 414

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I++ L  A++  +  LVY P   L D+ + G EALI+W+HP  G IS   F+
Sbjct: 415 AEAQKRKEIEDGLIKALKYDQFELVYQPQFSLHDDTLKGYEALIRWEHPTKGTISPDVFI 474

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I+ I  ++L +  ++   W D+     + + +N +       E    +   +
Sbjct: 475 AVAEDTGLIEEIGDWVLRKACKEAARWEDRG----LHVAVNFSPAQFRAGETQIKVARAL 530

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P R+++  +ES+++ + E     L  + ++G+++ +DDFGT  S LSYL   PF
Sbjct: 531 KESGLDPRRLEIEITESLLIADTEAVVDTLRDISRLGVTIAMDDFGTGYSSLSYLSRFPF 590

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +    +     AI+ SII + +++   I A+ +  +  +  L   GCD +Q
Sbjct: 591 DKIKIDRSFIRNLGKDLGTDAIVTSIIGLGRSLNVLITAEGVENQDQVTLLRAAGCDLVQ 650

Query: 937 DSHVASP 943
                 P
Sbjct: 651 GFLYGRP 657


>gi|149187507|ref|ZP_01865804.1| hypothetical protein VSAK1_22344 [Vibrio shilonii AK1]
 gi|148838387|gb|EDL55327.1| hypothetical protein VSAK1_22344 [Vibrio shilonii AK1]
          Length = 709

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 221/452 (48%), Gaps = 15/452 (3%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I + +  T+ ++  + I   A+ D LT +PNR  F+  L + +    +      +V+ +D
Sbjct: 249 IAVRSMATKLEQRTQKITHLAYHDALTELPNRTRFIQHLQSTI---KSYPATSFSVLFLD 305

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELL------KFPDILARLSGNRFGIILISENN 626
           +D++K +ND  G   GD +L+ L  ++              +++R+ G+ F +++     
Sbjct: 306 LDEFKVVNDNYGHDSGDFLLIRLAEKLSLCARDITNDHPLTMISRIGGDEFLMLIPHLKT 365

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +  +      +  ++  PI +   E+ V  SIG A +  +  TS +++KNA++AMY AK 
Sbjct: 366 TEDVDAVIKKIFVAVRSPILMENEELVVGGSIGVARYPYNGKTSEDLIKNADIAMYRAKA 425

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N  + F    F+S      I+ +L  +  +  +  L + P++ +    I+G E+L++
Sbjct: 426 DGKNTHKVFTPKMFKSVVHRANIERELRRSLSDLQQFELWFQPLVCIKTGRILGAESLVR 485

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +   +F+ IAEE  MI  +  +++ER+   +  W      P     INI+SK
Sbjct: 486 WRHPTLGIVPPVDFISIAEETAMILPLGQWLIERLCIQLQQW-APYFAPDFHASINISSK 544

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L    L E     + K       I++  +ES+++ + + +   L  +R+ GI + LDDF
Sbjct: 545 QLYRQNLVEMFAFYMEKYQVPAKAIRIEITESLLLQDEDEAERTLKAIRESGIEVWLDDF 604

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL     D +K + S +       K   ++++++ MAKN++  ++A+ I   
Sbjct: 605 GTGYSSLSYLRKFTVDGIKIDRSFVRDIITDPKDQQLVQAMVAMAKNLDLLVVAEGIEKI 664

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++L++ GC   Q  +   P+  +  +K L
Sbjct: 665 EQAEKLSQYGCQIGQGYYYDKPMPVDDFVKRL 696


>gi|331652330|ref|ZP_08353349.1| protein gmr [Escherichia coli M718]
 gi|331050608|gb|EGI22666.1| protein gmr [Escherichia coli M718]
          Length = 661

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ K  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQKLNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|260771158|ref|ZP_05880085.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP
           102972]
 gi|260613755|gb|EEX38947.1| C-di-GMP phosphodiesterase A-related protein [Vibrio furnissii CIP
           102972]
 gi|315179236|gb|ADT86150.1| GGDEF domain protein [Vibrio furnissii NCTC 11218]
          Length = 685

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 229/442 (51%), Gaps = 9/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +   +   A+ D LTG+ NR   L  L+  +DL+  D +    +  +D+D++K IN
Sbjct: 230 ERELAEAKLNQLAYYDTLTGLANRSLLLQMLSKSIDLAQHDQH-SGVLFYLDLDRFKTIN 288

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD ++ ++  R+    K   I AR+ G+ F +++ +  +S ++ + A  +   
Sbjct: 289 DSLGHTIGDKLIKAIATRLQAWAKQDYIAARIGGDEFVVLIPAL-DSERVENVAKQLLAL 347

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ P ++ + ++  + SIG + + S+ IT+ ++L+ A+ A+Y AK  G N    +     
Sbjct: 348 ISNPYSIDDHQLYCSVSIGISMFPSAGITNIDVLRQADTALYRAKVSGRNKYVFYEPEMQ 407

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + I++ L  A+ +++  L Y P + L D +I+G+EALI+W+HP  G +    FM
Sbjct: 408 AQVESFLEIEKGLHEALSHNQFELYYQPQVNL-DHQIIGVEALIRWNHPHKGVLPPGAFM 466

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINIASKDLLDNELCEGMQA 816
            IAEE   I  I  +++E+       W+ +  +PP F  + INI+      +   + ++ 
Sbjct: 467 SIAEETGQILQIGNWIIEQACYQYAQWKKEGVLPPEFQRLAINISPLQFAQDAFVDHIRD 526

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +   +   I+L  +ES+++ N E +   + RL++  +++++DDFGT  S L YL ++
Sbjct: 527 ALQQAGITGEHIELEITESLLLENVESAIEKMARLKEFQLNISIDDFGTGYSSLRYLKHL 586

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +T     +   AI+ +II +A+ +   +IA+ +    ++  L  +GC+ 
Sbjct: 587 AVDVLKIDRSFVTQLHLDDSDQAIVDTIIMIARRLGLEVIAEGVEDTFELNALKELGCEQ 646

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q      PL    + +     
Sbjct: 647 FQGYLFDKPLTAQEMAQRFSHH 668


>gi|212213496|ref|YP_002304432.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212]
 gi|212011906|gb|ACJ19287.1| sensory box/GGDEF family protein [Coxiella burnetii CbuG_Q212]
          Length = 577

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 135/578 (23%), Positives = 265/578 (45%), Gaps = 29/578 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +F+   +  +A+    + +   D            + ++      + G           
Sbjct: 11  QVFNMLVKLDVALSVLNEAIVWIDHEGHIAWCNLPFSQLISRPRIEIIGLFI-------- 62

Query: 459 NDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            D+       +  +      + +   + E    A D++  ++    + + +  G  L +I
Sbjct: 63  -DKTITLKKGNQIISLFKVCHEKLHFKEEIIEFAKDSKTLYLSAFSQQIVDKKGG-LHFI 120

Query: 514 GIANDITEQK-------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               D+T Q+       K+   I   A +D LT +PNR+ F+ RL   +       + + 
Sbjct: 121 IALQDVTLQQSIFHTLLKNEARIAYLASRDQLTSLPNRREFIHRLNEEIGKPK-SVDSKL 179

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISE 624
           +++ +D+D +K IND LG  +GD VLV ++ R+ +L        L  L G+ F I+L   
Sbjct: 180 SLLFLDLDNFKDINDALGHHMGDCVLVHVSDRLRKLDLSPLNYFLGHLGGDEFVILLKDL 239

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  +  +      +    + V  SIG      SK  S  +LK A++AMY A
Sbjct: 240 QQDKDATLCAKKISNAFFESFKIKNFLLYVNFSIGITIDFYSKTDSETLLKKADMAMYQA 299

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N    +          R++++     A+E ++ YLVY P   L  ++I G+E L+
Sbjct: 300 KKKGRNTFSFYTEKLGERYRHRLILENAFHQALEENQFYLVYQPQYELSTQKIRGMETLL 359

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS  +F+ IAE+  +I  I  ++L    +    W+ +  +  I + IN++ 
Sbjct: 360 RWKHPELGEISPEDFIPIAEKAGIIIPIGEWVLRHACQQYKQWQSKIPVGEIKLSINVSP 419

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              +  +    +  ++ +T   P+ I+L  +E+ +M     ++ +L  LR+IG+++ +DD
Sbjct: 420 PQSIRKKFANSVAHILKETNTPPNVIELEITENSLMTKLNSAKKVLEELREIGLNIAIDD 479

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P DTVK + + + G    +   AI++ +I +A+++  T I + +  
Sbjct: 480 FGTGHSSLAYLKILPIDTVKIDKAFVKGLPDDQHDTAIVKFVIDLARSLNLTTIVEGVEK 539

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  ++ L ++G   +Q ++ +  +  + + KLLK + P
Sbjct: 540 KEQMEFLLKLGGPLVQGNYFSKAIEADLMFKLLKNQSP 577


>gi|330000638|ref|ZP_08303776.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
 gi|328537927|gb|EGF64111.1| diguanylate cyclase domain protein [Klebsiella sp. MS 92-3]
          Length = 595

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/425 (30%), Positives = 213/425 (50%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 178 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGC-AVVMLFDLDSFKDVNDTLGH 236

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  + L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 237 DAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALER-ANVIREKISQPY 295

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 296 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 354

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 355 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 414

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I A+  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 415 IGLINALGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIEVLHQTGL 469

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR+ GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 470 DPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRLSYFPFDKIKI 529

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 530 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIG 589

Query: 942 SPLGF 946
            P   
Sbjct: 590 KPSPL 594


>gi|293414618|ref|ZP_06657267.1| hypothetical protein ECDG_01181 [Escherichia coli B185]
 gi|291434676|gb|EFF07649.1| hypothetical protein ECDG_01181 [Escherichia coli B185]
          Length = 661

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|192288952|ref|YP_001989557.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192282701|gb|ACE99081.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 527

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 228/472 (48%), Gaps = 18/472 (3%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
             ++ +W+ I   P    +G ++     A DI+E+ +        A  D LT + NR  F
Sbjct: 57  PGDRIYWVDITSFP----DGWLI----SAADISERLRQGIVGAELARTDRLTQLANRLVF 108

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL  +L     D      V+ ID+D++K IND LG  +GD +L  + +RI   L   D
Sbjct: 109 HERLADLLAQ-PADVRRDAAVLTIDLDRFKAINDSLGRNIGDALLCLVAKRISSALTPSD 167

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           +LAR+  + FG+I +  +        A  +   ++ P  L  + I V+A +G A     +
Sbjct: 168 VLARIEADEFGVIQVGRDQPDAAVILAKRLVDLLSRPYLLEGQLINVSAFVGIALPIDDE 227

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYH 725
           +    +LKNA+LA++ AK         F  +   S R    ++ DL  A+   E  LVY 
Sbjct: 228 LDVDGVLKNADLALHRAKQERYAGYRVFESAMDESMRARRALETDLRRALALREFSLVYQ 287

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    + G EAL++W  P+ G +S  +F+ IAEE  +I  I  ++L    RD  SW
Sbjct: 288 PQVNLQSRRVAGFEALLRWRCPRRGPVSPLDFIPIAEETGIIGPIGEWVLRTACRDAASW 347

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                     + +NI++    +  L   + + I+ +   P R++L  +ESV++     + 
Sbjct: 348 P-----GDYTVAVNISAIQFTNRSLVATVVSAIADSGLDPRRLELEITESVMLDARGNAL 402

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSII 903
            +L +LR +G+ ++LDDFGT  S L YL   PFD +K + S +  +++ R   AI+R+I 
Sbjct: 403 AVLQQLRGLGVRVSLDDFGTGYSSLGYLRSFPFDKIKIDQSFVREASDDRGNRAIVRAIA 462

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  ++    +A+ +  E  +  +   GC  +Q   ++ P+    I   L E
Sbjct: 463 SLGASLGMATVAEGVETEDQLARVAADGCTDVQGYLISRPIPPGEIEHFLAE 514


>gi|270264558|ref|ZP_06192824.1| RNase II stability modulator [Serratia odorifera 4Rx13]
 gi|270041694|gb|EFA14792.1| RNase II stability modulator [Serratia odorifera 4Rx13]
          Length = 664

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/584 (21%), Positives = 254/584 (43%), Gaps = 12/584 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                    T   ++ +          V  +  ++   D                GL   
Sbjct: 89  AGTASAFSDTKSVARDLVHGLSFAEQVVSEANSVIVIVDQHGRIQRFNRLSEEYTGLHEH 148

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G    +  ++   +    R  +  F        + E  V+    +  ++       S
Sbjct: 149 DVIGKN-VFQLFMSPEEAAASRRNIAGFFRN-GSSYEVERWVKTVKGERLFLFRNKFVHS 206

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            S  + +  I    DITE++++ E +   A  D +TG+PNR +  D++   +       +
Sbjct: 207 GSGKNEVFLICSGTDITEERRAQERLRVLANTDIITGLPNRNAIQDKIIQAIA---ERGD 263

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D +KK+ND  G   GD +LV ++  +   L+   +LARL G+ F ++L  
Sbjct: 264 SNVGLVYLDLDNFKKVNDAYGHMFGDRLLVEVSLAVLGCLEPDQVLARLGGDEF-LVLAQ 322

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +     +   A  +   +  P  +   E+    SIG A           ++++A+ AMY 
Sbjct: 323 QAEREMLQQLAQRIIDRLKTPFRIGLIEVYTGCSIGIALCPEHGNDLDGLIRSADTAMYV 382

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK RG      F   ++   ++ + +  +L   +E ++L + Y P I  +   +  +EAL
Sbjct: 383 AKERGKRTFTVFSPEMNKRVAEYMWLDTNLRKGLEQNQLVVYYQPKIDALSGMVHSVEAL 442

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++WD P+ G I   +F+  AEE  +I  +  ++L+       + + Q     + + +N++
Sbjct: 443 VRWDSPERGLIPPLQFISYAEESGLIGPLGRWVLQT--AAKQAAQWQQQGLALRVAVNLS 500

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ L+D+ + E +  ++     +P  +    +ES ++ +  R+R ++ RLR++G  + LD
Sbjct: 501 ARQLVDDSIVEDLINVLQHNKLTPCLLDFELTESSLIEDERRARAVITRLRELGAQVHLD 560

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+ L  IP D +K + S + G        +++R+I+  A+ ++  +IA+ + 
Sbjct: 561 DFGTGYSSLAQLARIPLDAIKLDKSFVRGVNFNPVSQSLVRAIVAAAEALKFRVIAEGVE 620

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            E + + L  +G D  Q    A P+    +   L+   P   + 
Sbjct: 621 TESENRFLDEVGVDEKQGFLFARPMLPEQLEHWLRSYCPSPPSA 664


>gi|75906902|ref|YP_321198.1| diguanylate cyclase/phosphodiesterase [Anabaena variabilis ATCC
           29413]
 gi|75700627|gb|ABA20303.1| diguanylate cyclase/phosphodiesterase [Anabaena variabilis ATCC
           29413]
          Length = 576

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 224/438 (51%), Gaps = 8/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             K  E I   +  D LTG+PNR+   +R+   L  S         VMV+ ID +  I+ 
Sbjct: 124 LHKLDELIDYISNYDKLTGLPNRELLRERVNQAL--SQQYSQKMVAVMVLGIDDFTGISH 181

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            L     + +L ++ +R+   L   DILA LSG+ F I  +   +   I   +  +  ++
Sbjct: 182 ALEHEQSNLLLRAVGQRLTSCLAQKDILAHLSGDEFAIARVEIPSIESIVKLSQLLLSAL 241

Query: 642 AMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
             P  +   +I +TASIG             ++L+ A +A+Y AK +G +  + +     
Sbjct: 242 NKPFTIKGDQIHITASIGITINQPDNLHDVDQLLQQAHVALYQAKQQGRSQHQFYSPEIN 301

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++ +L  A++ +E+ + Y PII L  ++I  +EAL++W HP  G +S ++F+
Sbjct: 302 AQLQERLALENELHGALQRNEIVVYYQPIIDLQTQQITAVEALVRWQHPTRGLVSPAKFI 361

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  I  ++L        +W+  A +PPI + +N++++   ++ L E +  +I
Sbjct: 362 PIAEANGLIVEIGEWVLRTACLQNRAWQ-LAGLPPIRMSVNLSARQFEESNLVELVGEII 420

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   PS ++L  +ES +M + +RS  +L +LR++G+ L LDDFGT  S L+YL   P 
Sbjct: 421 QESGLHPSYLELEVTESSLMADIQRSVTILKQLRELGVWLALDDFGTGYSSLNYLKRFPV 480

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +    S     A+  +II +AK+++  I A+ I  +  +  L + GC   Q
Sbjct: 481 NMLKIDRSFVQDVCSNPDSAAVTNAIIALAKSLQLKITAEGIETQQQLSYLQKRGCQEGQ 540

Query: 937 DSHVASPLGFNSILKLLK 954
             +   P   N I ++L+
Sbjct: 541 GYYFGIPAPANEITEILQ 558


>gi|332094741|gb|EGI99785.1| protein gmr [Shigella boydii 3594-74]
          Length = 632

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 74  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 127

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S    +  
Sbjct: 128 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFL 187

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 188 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 244

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 245 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 303

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 304 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 363

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 364 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 422

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 423 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 480

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 481 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 540

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 541 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 600

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 601 KNGINERQGFLFAKPMPAVAFERWYKRYL 629


>gi|332161935|ref|YP_004298512.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666165|gb|ADZ42809.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 864

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 219/441 (49%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S + I   AF D+LTG+PNR  FL      + L+A   N    V+VI++D++K++N
Sbjct: 425 ERELSRKQIQHLAFYDSLTGLPNRTQFLVYAKQAIALAAEM-NYPLAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L ++ +R+ + L   DI+ RLSG+ F I+L S     +       M   
Sbjct: 484 DSLGHAAGDELLAAMAQRLRDSLPKNDIIGRLSGDEFIIMLTSCT-MQQTTVRVEKMLSL 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +AS+G + +  + +    ++ +A++AM+ AK+ G  H   F     
Sbjct: 543 LSQPCQIANMNIIPSASVGISLYPENGMEMDTLMNHADIAMHKAKNMGRGHFNFFSAEMN 602

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++  +  ++ L  A     L L Y P + L D  + G+EAL +W HP  G+I    F+
Sbjct: 603 NLNQQRLDMEDALRHAFHIGSLELFYQPQVMLKDGHLYGVEALSRWKHPILGDIPPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L+ +E   R +  WR +    P  + +N++  +  +  L + +  ++
Sbjct: 663 PLAEESGLINELALWAIETACRQLADWRLRGIDVP-SVSVNLSPTNFHNLGLPDMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 HHYHLPPQDLTLEITEDILIENNPTIFTTIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E    +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEYDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYLIGQ 841

Query: 937 DSHVASPLGFNSILKLLKERF 957
               +  L    + K L+ R 
Sbjct: 842 GFLFSEALPAIKLEKWLEHRL 862



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 32/205 (15%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-----NDRDNF 464
           A+  S   + ++D+    +    +     G     + G     L + H      ++    
Sbjct: 26  ALDHS-LAIIEFDLSSRIIEVNQNYLDYFGYQRDEVIGQNH--LMFCHPGYANSDEYQKI 82

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---E 521
           +  L +        L+  F     D    W+    +P+   +G + R + IA +IT   E
Sbjct: 83  KKCLLA-----GQSLEGRFERIHKDGSRVWLAAIYQPVPGPDGSVTRIVKIAKNITFLIE 137

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q+++ +  +       LT +       DR  + + ++A  +  +  V  I+   + K+  
Sbjct: 138 QQRATQEWVQL-----LTQL------TDRSDSAMFIAANSEQGQQAV-YIN-QGFTKL-- 182

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP 606
             G      +  ++   +       
Sbjct: 183 -FGYTPAQALGQNMVDLLQSAHPEQ 206



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G    + L   H                 R+  L  E    
Sbjct: 173 VYINQGFTKLFGYTPAQALGQNMVDLLQSAHPEQLALIDAT---SPEARQQLLPKEL-FY 228

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + D Q HW    I  + N +G+    IGI  DIT  K   
Sbjct: 229 SKDRQPHWCSAVINSLVNEHGEPSYSIGILTDITMTKMYE 268


>gi|320183844|gb|EFW58676.1| hypothetical protein SGF_03960 [Shigella flexneri CDC 796-83]
          Length = 652

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 94  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 147

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S    +  
Sbjct: 148 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKSEIFL 207

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 208 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 264

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 265 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 323

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 324 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 383

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 384 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 442

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 443 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 500

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 501 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 560

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 561 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 620

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 621 KNGINERQGFLFAKPMPAVAFERWYKRYL 649


>gi|187920568|ref|YP_001889600.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187719006|gb|ACD20229.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 689

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 208/439 (47%), Gaps = 7/439 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LTG+PNR +  DR+   + LSA        ++ +D+D +K IND L
Sbjct: 250 RLNGQIVRLATLDTLTGLPNRSTLTDRIERAI-LSARRQRTLFAILFMDLDGFKTINDSL 308

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD VL +  +R+ + ++  D +ARL G+ F ++  +  +    +  A  + + + +
Sbjct: 309 GHSVGDQVLTAFAQRLLQCVRETDTVARLGGDEFVVLAENLGSREDASALAEGVLERMRL 368

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
            +    + + V  SIG A +     +   +LK+A+ AMY AK  G +    F  S     
Sbjct: 369 GVWTDSQPLQVMPSIGIALYPHDGDSVETLLKHADAAMYEAKRAGRSTYRFFERSMNEAA 428

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + I+  L  A+      L + P        + G EALI+  HP+ G ++  EF+ IA
Sbjct: 429 TRTLQIQNALHDALAAGHFSLHFQPKFHGNGNSLAGAEALIRLHHPQLGALTPLEFIPIA 488

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R I  W  Q   P + + IN++ + LL   L   M A++   
Sbjct: 489 ERSGQIVQIGYWVVRETCRQIRRWVSQGL-PAMKVAINLSPRQLLQPNLVASMLAIVEAE 547

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +  +I    +E+V M +  ++  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 548 GVACEQIMFEITETVAMQDAPKTIEMIREFQASGFEIAIDDFGTGYSSLAYLQRFRVKQL 607

Query: 882 KFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +     G      +  AI+ +II +A ++E  ++A+ +  E  +  L  M CD +Q  
Sbjct: 608 KIDRFFTNGLDAHGPEGSAIVSAIIALAHSLEMDVVAEGVETESQLGMLKTMRCDEMQGF 667

Query: 939 HVASPLGFNSILKLLKERF 957
            +  PLG +    LL+ER 
Sbjct: 668 LLGKPLGADDFANLLRERM 686


>gi|124515794|gb|EAY57303.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Leptospirillum rubarum]
          Length = 1036

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 125/550 (22%), Positives = 251/550 (45%), Gaps = 12/550 (2%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
                + D +   D     V        I G +   + G     L      D   ++T+  
Sbjct: 479  VFDMASDGILITDSENRIVLVNRAFTEITGYSQEEVKGKNPRLLSS-GRQDTFFYQTMWH 537

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              +    G  Q E   R    + +   + I    + NG I  +IGI +D+T  K+S E I
Sbjct: 538  ELLTN--GYWQGELWNRRKSGEIYPEWLSISTRKDKNGRIENHIGIFHDLTGVKESEERI 595

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A+ D LTG+PNR    DRL   L  ++         +++D+D +K +ND+ G  VGD
Sbjct: 596  AFLAYHDPLTGLPNRILLRDRLEYALRQTSRTGKALGI-LLLDLDGFKNVNDLSGHHVGD 654

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L+ ++RR+   ++  D + R+ G+ F I+        +++     + + +  P  +  
Sbjct: 655  LLLMEVSRRMAGAVRTSDSVGRMGGDEFLILFPDLTGLEELSSIMDRLLEQVRQPYEIEG 714

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
              +++TAS G   +        +++++A++AMY AK+RG N +  + +S  +S R    +
Sbjct: 715  NSVSLTASGGVTLYPRDNAGIDDLIRHADIAMYSAKNRGKNRIHFYELSMEQSLRSREPL 774

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            K++L  A++N  L+L+Y P I +    ++G EAL++W HP    +  ++F+   E   + 
Sbjct: 775  KQELTRALQNGHLHLLYQPQIDIRTGVLIGAEALLRWFHPDGIRLP-ADFLGTIENDDLS 833

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY-SPS 826
              +  ++L    R  + W+ +       I +NI+ +      L + ++ L+        S
Sbjct: 834  IELGRWVLGEALRQHLQWKQEG--QFFRIGVNISPRHFGSGMLEQDLKHLVDVRGIEDLS 891

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++L  +E+ ++ +    +  +   R++G+ +  DDFGT  + L+ +  +  DT+K + S
Sbjct: 892  GLELEITENTLVSDLGEVQKTVRACREMGVHIAFDDFGTGYTSLTMVRTLCPDTLKVDQS 951

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +          +IL SI+ + +  +  +I + +    ++  +  +G   IQ   V+ PL
Sbjct: 952  FLRSITENPGNRSILESILKIGQGFQAAVIMEGVENARELGLVREIGYHCIQGYLVSPPL 1011

Query: 945  GFNSILKLLK 954
              +     L+
Sbjct: 1012 LPSQFSSFLQ 1021



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 9/137 (6%)

Query: 391 LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGS 444
           L   +  Q +     R  +       S   +   D ++     +        + G     
Sbjct: 332 LENAFLVQALSRSESRLRVFQKTFESSTVSLCICDALQPDFPVIFANDQFIRLTGYPRSE 391

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
             G    +L      DR+                ++   R    D       + + P+++
Sbjct: 392 TIGKNCRFLQG---ADREQESRTEIRQAIEAGKSVRTMLRNYRKDGTPFINELSLFPITD 448

Query: 505 SNGDILRYIGIANDITE 521
            +G +  Y+GI ND+T+
Sbjct: 449 PDGTVTHYLGIQNDVTD 465


>gi|302189850|ref|ZP_07266523.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 685

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/615 (19%), Positives = 255/615 (41%), Gaps = 21/615 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 62  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 121

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L      + G        I     
Sbjct: 122 SARAFNASVLANVAEGILVVDETGTISFANPAICQLLNTTVDHLRGTQVLDY-IIEPKVG 180

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +              ++  +R A      + +    +          +    D++ 
Sbjct: 181 SWLDSGFYQHYRKADTYRAHDAILRTAQGTQLPVALSCAALPAEQ---KAMVLTVLDMSV 237

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     + ++L  +   D     V+ +D+D +K+IND
Sbjct: 238 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKY-LVVLFMDLDGFKQIND 296

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +  + ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 297 ALGHEAGDQVLLWVAEQFKDSMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 356

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   +IT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 357 SGRRQVDGVDITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 416

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P I + D  + G EAL++W HP  G +  + F+ 
Sbjct: 417 RARSRLMLEESVRTAIDGKDFSVVYQPQIHVADGRLRGFEALLRWQHPAVGEVPPALFIP 476

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W      P   + + ++        L   ++  + 
Sbjct: 477 LLEETRLINRLGSWIFDQGAEQRQAWSRIFA-PDTVLSVCVSPTQFCLPNLASELKRAMD 535

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E+ ++ N   S   L  L  +G+ + LDDFGT    LS+L  +  D
Sbjct: 536 RFELKPGQIEVEITETALVNNLSHSHKQLKLLHDVGVRIALDDFGTGECSLSHLRNLQLD 595

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K +   +     +++  A+  SII +++N++  +IA+ +      + L   GC  IQ 
Sbjct: 596 TLKLDRRFVANIVGSKREAAMASSIIDLSRNLDMLVIAEGVETAEQYQWLAANGCQVIQG 655

Query: 938 SHVASPLGFNSILKL 952
             +A P+     L+ 
Sbjct: 656 FLIAHPMVPEDALRF 670


>gi|323525280|ref|YP_004227433.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323382282|gb|ADX54373.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 795

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 210/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L   +   A        ++ ID+D +K +ND LG 
Sbjct: 341 EREMTHLVEYDLLTGLRNRYATLRTLRQEVAQPANLG--HLAILFIDLDNFKTVNDTLGH 398

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  ++   +    A A  ++ + P 
Sbjct: 399 NAGDIVLQMTASRLATAVAEGGTLSRIGGDEFVVVIKGDDVEKRAVALAEAAAEAFSKPF 458

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +          
Sbjct: 459 EVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPQLSHRADH 518

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 519 LMKWEQQLRVALAEGQLFLAYQPKIDLTRRCITGFEALVRWNHPQHGLIPANEFIPVAES 578

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 579 TGLIVPIGDFVIETACRQLALWQQQGYDT-LSLAVNISAVQFWRGDLYETVSHAIEESGI 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 638 SARRLELEITETAMMEYPELVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 697

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 698 DRSFVQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 757

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  LL+ 
Sbjct: 758 RPVPVDAIPALLER 771


>gi|295675921|ref|YP_003604445.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295435764|gb|ADG14934.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 787

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 215/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L    D++   +  R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEYDLLTGLHNRYATLQALRH--DVAQPFNLGRLAILFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  ++   +    A A  ++ + P 
Sbjct: 386 NAGDIVLQMTASRLATAVGDEGTLSRIGGDEFVVVIKGDDVEKRAVALAEAASEAFSKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 DVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALAQGQLFLAYQPKIDLARRCITGFEALVRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I +T  
Sbjct: 566 TGLIVPIGDFVIETACRQLAQWQQQGYDT-LSLAVNISAVQFWRGDLYETISRAIEETGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 SARRLELEITETTMMEFPEVVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFAVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFVQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+   +I  LL+ 
Sbjct: 745 RPVPVEAIPALLER 758


>gi|89072583|ref|ZP_01159155.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium sp. SKA34]
 gi|89051687|gb|EAR57140.1| putative c-di-GMP phosphodiesterase A-related protein
           [Photobacterium sp. SKA34]
          Length = 690

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 217/437 (49%), Gaps = 10/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    I      D LTG+ NR  F  +L  ++            ++ IDID +K IND 
Sbjct: 258 KRQQGQIEQLVQMDPLTGLLNRYGFTRQLDQLMKA-----ETPVVMLYIDIDNFKNINDS 312

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  +GD VL  + +R+  LL    IL  LSG+ F I+L +  +       +  +   + 
Sbjct: 313 LGHHIGDKVLQEIAQRLRRLLPETAILGYLSGDEFAILLPNPEHERTGEIISEQIIALVN 372

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P  L      +  SIG  +       +  ML+NA+ AMY AKHRG N +  F   +S  
Sbjct: 373 QPFELRHFRKHLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFNDAMSKE 432

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ ++ +L  A++N+ L + Y P +   D  I G EAL++W HP  G IS ++F+ +
Sbjct: 433 ARMRLWLEIELQKALQNNGLEVWYQPKVNARDFAIDGAEALVRWKHPVEGYISPAQFIPV 492

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I+ +   ++  +   +  W+ +  +    + IN++ +   ++ L   +  L   
Sbjct: 493 AESSGLIEQLGCAVMREVFTTVSQWKKRKLLTG-RVAINLSPQQFGNSGLINFVDKLRLS 551

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P+ I    +ES VM + E +  +L  ++++G +L++DDFGT  S LSYL   P D 
Sbjct: 552 TDINPADITFELTESAVMSDGEHTIQMLNAIKQLGFALSIDDFGTGYSSLSYLARFPLDE 611

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +       K++ ++ +II + K+++ +++A+ I        L+ + CDYIQ  
Sbjct: 612 LKVDRAFIQDIDTIPKQVTLIENIINLGKSLKMSVVAEGIETRQQATLLSNLNCDYIQGF 671

Query: 939 HVASPLGFNSILKLLKE 955
           H   P+  + +  +L +
Sbjct: 672 HFYRPMPKHELEAILLQ 688


>gi|94314669|ref|YP_587878.1| hypothetical protein Rmet_5750 [Cupriavidus metallidurans CH34]
 gi|93358521|gb|ABF12609.1| hypothetical protein; GGDEF and EAL domains [Cupriavidus
           metallidurans CH34]
          Length = 581

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 213/434 (49%), Gaps = 6/434 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   A  D LTG+PNR    +R   +L  +    +    ++++D+D +K IN+ LG
Sbjct: 137 ADAYISHMAKHDALTGLPNRSELHERCEVLLAEARRRGSG-VALLLLDLDHFKHINETLG 195

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGDD+L ++  RI   ++  D++AR+ G+ F + L       +    A  +   ++  
Sbjct: 196 HPVGDDLLRTIADRIRGAVRPRDVVARMGGDEFAVALGDLRFDGEAELVAAKILARVSED 255

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RS 702
           + L    + VT S+G A +     + ++++K+A+ AMY AKH G   +  F         
Sbjct: 256 LPLAGEHVRVTPSLGMAIFPQDGNSLTDLMKSADAAMYAAKHGGRAQLRRFASEMAEASR 315

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  I+  L  A+   E  L Y PI+ +    ++G+EALI W+ P+ G +  SEF+ IAE
Sbjct: 316 TRFTIEGLLRRALAKGEFRLRYQPIVDVSRLALLGVEALIAWETPERGVMQPSEFIPIAE 375

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  ++  +  ++L +  +DI S R +     I + +NI+   L        +   +  + 
Sbjct: 376 QCGLVSELGEWVLGKACQDIQSVRQELG-CDIDVAVNISPLQLRQASFPAAVAQALRASG 434

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + +  +E +++   E +   L ++R++G+ +++DDFGT  S L YL  +P   +K
Sbjct: 435 LPAASLTIEVTEGILVDGSETTVETLRQVRQLGVGISIDDFGTGYSGLGYLTRLPISKLK 494

Query: 883 FNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +          A+  +I+ + + +   ++A+ +  +     L   GCD +Q    
Sbjct: 495 IDKSFVDDLAVPGHDRAVAAAIVALGRQLHLQVVAEGVETKAQFDFLRAEGCDAVQGYLF 554

Query: 941 ASPLGFNSILKLLK 954
           + P+G +++ ++L+
Sbjct: 555 SQPVGLDTLRQILR 568


>gi|221068280|ref|ZP_03544385.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
 gi|220713303|gb|EED68671.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
          Length = 728

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 218/442 (49%), Gaps = 11/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR----PTVMVIDIDKY 576
           + + +   +   AF D LT +PNR  F DRL   L      +  R      ++ +D+D +
Sbjct: 270 KLQLANTELRQRAFADPLTNLPNRLLFEDRLIHALLRLERANRSRTKERLGILFVDLDGF 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD +LVS   R+    +  D +AR+ G+ F ++L    +       A  
Sbjct: 330 KPINDSFGHAAGDQILVSAAERLMAEARSSDTVARVGGDEFLVLLEDTQDVAACMAVANR 389

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K+++ P  L  +E+ +T SIG  ++         ++ NA+ AMY AK  GGN    F 
Sbjct: 390 ILKALSQPFQLGNKELQITCSIGIVAFPDHG-DRDHLIANADAAMYAAKRNGGNGFAVFE 448

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  S+++ ++ DL  A++  ++ L Y P I      I+G+EAL++W HP+ G I+ 
Sbjct: 449 PHMGSDASEQLELQNDLRNAIQRGQMELHYQPKIDGERGNIIGVEALLRWAHPERGMIAP 508

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I ++  +++E   R +  WR+      + + IN++   L ++ L + +
Sbjct: 509 DIFIPLAERFGIINSLGNWVIEEACRQLALWRNMGLQ--MRVAINLSVHQLRESGLADRI 566

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +     S++    +ESV M + + ++  +  LR IGI L++DDFGT  S L+YL 
Sbjct: 567 TQTLLRHDVQASQLLCEITESVAMEDTQATQRAIEELRDIGIFLSIDDFGTGYSSLNYLR 626

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +      E   A++ +++ +A  +   ++A+ +        L  M C
Sbjct: 627 QLPAQQLKIDRSFIRDLETEEDARAVVHAVVRLAHALGLRVVAEGVETAGQRDILIDMQC 686

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
           D +Q    A P+  +S+L   +
Sbjct: 687 DELQGYFYARPMPADSLLAWAR 708


>gi|170724626|ref|YP_001758652.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169809973|gb|ACA84557.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 703

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 110/530 (20%), Positives = 230/530 (43%), Gaps = 11/530 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  SL +  + + V+  D     +     +  I G +S  + G        I+I+D   
Sbjct: 152 KELMSLILEDNAEAVYITDSHHSILAVNKAMCRICGYSSEQLIGSK---TDLINIDDHPL 208

Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                 +  +   RG  Q E     +D          R ++    + + ++ I +DI+ +
Sbjct: 209 NVTAEYNKAIE-DRGNWQGEVWKLRSDGSQFPAWKSCRKLTVE--EQVYFVTIFSDISAK 265

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    +   A  D+LTG+PNR      L   +  +    N    VM +D++ +K IND 
Sbjct: 266 KQLESKLTEQAMFDSLTGLPNRFHLKKLLNQAIKQTEMRPNTLGAVMFLDLNGFKNINDC 325

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  ++ R+         +ARL G+ F +++ +  +  +I   +  +     
Sbjct: 326 FGHATGDKVLQLVSARLEASCIENAEIARLGGDEFTLVVQNCTSRQEIEALSKQIMSLFD 385

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFR 701
            P  + ++++ +  SIG + +      + ++L  A+ AMY AK           ++    
Sbjct: 386 TPFEIDDQKLYLGTSIGISLFPEHSNHADKLLSLADTAMYSAKKSPSHLLFYDKKMHQEA 445

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++    +L  A    +  L Y  I+ L    ++G+EAL++W  P    I++ +F+ + 
Sbjct: 446 EQKLHTLSELRHAHNLDQFKLAYQVIVNLECNSLIGVEALLRWQKPDGKVINACDFVPLL 505

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  ++  I  + L+     ++ WR     P + + +N++   L  ++  + +   +  +
Sbjct: 506 EETGLLITIGQWALQLACEQMLEWR--NYSPDLKVCVNVSPMQLEHHDFVQQVTQSLQSS 563

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E  ++  PE     L  L+ +G+S+ +DDFG   S LS LG +P D++
Sbjct: 564 KLPAEALVLEITELALLRQPETVTKTLLALKALGVSIAIDDFGAGLSSLSKLGTLPIDSL 623

Query: 882 KFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           K +       +  +   + +++I +A+ ++ + + + +      + L +M
Sbjct: 624 KIDAGFAQRLSEPQGKELCQAMIQLAQALDISFVVEGVETLQQKEILEKM 673


>gi|166711958|ref|ZP_02243165.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 728

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 220/441 (49%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 290 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 348

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RI   L    +LARLSG+ F + L    ++ + +  A  +  S
Sbjct: 349 DSQGHAAGDGLLRDIALRINNQLTATAMLARLSGDEFALALPQC-SAEQASAVAERVLVS 407

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 408 IASPLPVGHMTMHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADMN 467

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 468 RMAQERVALEAELRQAIGRDQLQLHYQPQMHSAAPHTLYGVEALLRWNHPQLGAVSPARF 527

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  ++  IN ++L    R +  WR Q  +P   + +N+++       +   +  L
Sbjct: 528 LQVAEEQGIMPQINAWVLRSACRQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLQL 586

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+     PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 587 IADMGVKPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 646

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 647 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 706

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 707 QGYLFSRPLPAAALEAWLGAQ 727



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 2/132 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q         + A+ GS   +   D+    +        + G     + G   + + 
Sbjct: 4   AGEQPEQRRSRLLAEALDGSSSAILICDLQSQMLYANDGFQRMFGYTEAELVGQRPSDVL 63

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               +D+     + D          + +  V   D    W+ +   P+ ++N     Y+ 
Sbjct: 64  TRAQSDQSEVARLRDRA--NALQHTRADLLVYRKDGTPLWISLNFNPIYDANHVPSHYVA 121

Query: 515 IANDITEQKKSL 526
           +  DIT+ K   
Sbjct: 122 VLTDITDTKMHE 133


>gi|325845271|ref|ZP_08168575.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
 gi|325488712|gb|EGC91117.1| diguanylate cyclase (GGDEF) domain protein [Turicibacter sp. HGF1]
          Length = 785

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 125/567 (22%), Positives = 263/567 (46%), Gaps = 34/567 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRV--------TTTPDIATILGLASGSMHGPIR 450
            + +   +  + +      +   ++    +               +I+G     +    +
Sbjct: 241 ELRNKDAKLQMILENIPFAICLKELDGTIIDVNSKFMEYYNKSRESIVGYKISELD---K 297

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           ++   I   D+   +            +   +F +R    +     I   P+ +    ++
Sbjct: 298 SFNAVIAYEDQTVIK-------EGCSQKFIRQFELR---GEERIAEIYKAPVFDIANKMI 347

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  ++TE  K+ E I   A+ D LTG+ NR+S    + +          L  TVM 
Sbjct: 348 GIVALMREVTEDIKTQEHIKRLAYTDFLTGLHNRRSLYKYIESEKAQ------LNLTVMF 401

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +KK+ND  G   GD+ L+ +++++   L     +AR+ G+ F ++  + N+   +
Sbjct: 402 MDLDNFKKLNDSFGHHYGDEALLLISKKLIS-LCEDAFVARIGGDEFVVVWKNLNSETDL 460

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            +    +   +    +  ++   ++ S+G  +     I    +L   +LA+Y AK +G N
Sbjct: 461 MNKINEILLEMKTEFSKGDKTNIISVSMGIVNSKGRDIDVDHLLLQGDLALYRAKEKGKN 520

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +       R   + ++ DL  A++N+E+ L Y P     D+++ G EAL +WD+PK
Sbjct: 521 QFVIYTDDLEKERLFALELEMDLRDAIKNNEITLFYQPQYTC-DKQLQGFEALFRWDNPK 579

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           + ++S  + + + EE  MI  I  +++E   R      ++ +   + + +NI++  ++++
Sbjct: 580 YQHVSIIDIIKMIEECRMIDEIGDYIIEHSCR-FAKKVNEYSTKLLVVSMNISALQIMNH 638

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              +  ++LI K   SPS I +  +E+V+M N + +   L  L+ +G+ ++LDDFGT  S
Sbjct: 639 NFVDKFKSLIEKVGVSPSLIGIEITETVLMENMKENTKKLKALKALGVKISLDDFGTGYS 698

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL ++P   VK + S + G ++    I  ++ I+ +A  +   ++A+ +  E D+K 
Sbjct: 699 SLNYLVHLPLSQVKIDQSFVRGMSQGEEFIRLVKLIVNIAHTLSLPVVAEGVEYEEDLKL 758

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L  +  DYIQ  + + P+     LKL+
Sbjct: 759 LQSLKIDYIQGYYFSKPVCEEEALKLI 785



 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   V  ++       +   S  +  +L +  +  + W  +     +    +     G  
Sbjct: 107 LKLKVKSYLRYISVLRESKNSQLQFDAL-LNNTPYMAWFKNTDSQYIKVNREFREHSGKD 165

Query: 442 SGSMHGPIRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              + G   +  W   I    R+      D  V   R ++ +E  +      +    I  
Sbjct: 166 DDVIFGRDDSFVWDGKIGETCRE-----YDLIVMNERRQIVFEEVIPGKKG-YREFNIYK 219

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
            P+ +   +++  IGIA D+TE +     +  
Sbjct: 220 APVVDELDEVIGTIGIARDVTELRNKDAKLQM 251


>gi|256380268|ref|YP_003103928.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Actinosynnema mirum DSM 43827]
 gi|255924571|gb|ACU40082.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Actinosynnema mirum DSM 43827]
          Length = 1064

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 129/583 (22%), Positives = 254/583 (43%), Gaps = 16/583 (2%)

Query: 379  VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
               +     Q +         +    +R +  V  +   +  +D     V     +  +L
Sbjct: 481  GRTLAVGTAQDITEQRVAETRMQRSSQRFADLVSLTPVGIGLFDEGERLVEANDALCDLL 540

Query: 439  GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWM 495
            G+    + G            D D+    +         R  ++     +   D +  + 
Sbjct: 541  GMDLEQLRGMTAE--QLTDPADNDDRLQSVSRMTEFGAERAHKIPQRI-LVRPDGERVYC 597

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             + I      +G    ++ +  DITE++++ E +   A  D+LTG+PNR         + 
Sbjct: 598  ELHIALSVQDDGR-RFWLIVFQDITERRRTAEALRHQATHDDLTGLPNRALVK---ELLG 653

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            +L    D  +  V+  DID +K++ND LG   GD++LV+L RR+   L      ARLSG+
Sbjct: 654  ELLEGGDRAKVAVLFCDIDNFKRVNDSLGHDAGDELLVALARRLEGGLPDGCTAARLSGD 713

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             + II  + +    +   A  +   +   + +  + + V+ASIG A    S+ T +++L+
Sbjct: 714  EYVIICENIDAVGGVDALATRVAGLLRTAVPVHGQLVRVSASIGAAVPNGSRATGADLLR 773

Query: 676  NAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
             A+ AM+ AK  G     + S  + +    +V ++  L  A+ +  L L Y P++ + D 
Sbjct: 774  FADAAMFEAKRSGAGRVSLASAALIASADRQVHLEGQLRDALAHDGLALHYQPVVGV-DG 832

Query: 734  EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             +   EAL++W HP  G +S   F+ +AE+  +++ ++ ++L    ++  +W    +  P
Sbjct: 833  SVQTAEALVRWPHPDRGLLSPDIFLPVAEQGDLLRELDRWVLRTALKEAATWPA-PDGKP 891

Query: 794  IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + + +N+A     D E  + + A I+++     R+ L   E+ ++  P R R  +  L +
Sbjct: 892  VAVAVNLAGLVPGDPEFVDIVSATIAESGIPWDRVVLELVETALVDLPSRVRQSMAELVE 951

Query: 854  IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIET 911
             G+   +DDFGT  S L+ L  +P   +K +   +   GS     A+ R+++ MA+ +  
Sbjct: 952  RGVQFAVDDFGTGYSSLARLKDLPAQIIKVDRRFVAGVGSDSSDFAVARAVVDMARAMGR 1011

Query: 912  TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +A+ +        L  +G D  Q    + P+       +L 
Sbjct: 1012 KCVAEGVETATQFHVLRGVGVDAYQGWLFSRPVPPKEFRAVLA 1054



 Score =  114 bits (286), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +Q V       + +  D  R + A   +   VW+WD+    V  +  +A + G+    
Sbjct: 361 GTVQDVTEARAMERQLREDRRRLADAQRAARLGVWEWDLATGEVVWSDMLAELFGVPRDE 420

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                R +L  +H +DR     +    +      +Q E R+   D            ++ 
Sbjct: 421 -RTTYRTYLDLVHPDDRGWVDDMWQQ-LATEETPVQCEHRIVRRDGAVRVFRSHGVVING 478

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            +G  L  +G A DITEQ+ +   +  ++ +
Sbjct: 479 PDGRTL-AVGTAQDITEQRVAETRMQRSSQR 508



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   ++  V      +  +  +  R       +    W++D        +     +LG+ 
Sbjct: 104 LTTVLLVDVSDLAKAADELRDEQRRLRAVQRVAAIGSWEYDPDTGATVWSRTHYELLGIE 163

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            GS+    +  L   H +D D       S        +   +RV   D +  W+      
Sbjct: 164 PGSVVPGAQAVLAVTHPDDHD-VVASYWSNREITGAPIDIVYRVIRPDGELRWIRGVAEA 222

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
              ++G      G   DITEQ ++  
Sbjct: 223 ELRADGRARLITGYIRDITEQWRADR 248



 Score = 65.0 bits (157), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 11/153 (7%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I+ +       + + ++  R   A   +    W +D+    +  +  +  +   ++  + 
Sbjct: 237 IRDITEQWRADRALATERARLLEAQRIARIGSWTYDVRGRSLHRSEVLLEM--YSAIGVS 294

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNS 505
               + L  +H +DR +   +    +  + GR  + E R    D  +     R R     
Sbjct: 295 PDRHDLLGGVHADDRAHLLELRRKLLRAKDGRTQEAEVRSELGDRVYV---CRARVEREP 351

Query: 506 NGD-ILRYIGIANDITE----QKKSLEGILCNA 533
            G   +R  G   D+TE    +++  E     A
Sbjct: 352 GGRAPVRLHGTVQDVTEARAMERQLREDRRRLA 384


>gi|320335592|ref|YP_004172303.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319756881|gb|ADV68638.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 761

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 151/768 (19%), Positives = 287/768 (37%), Gaps = 59/768 (7%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
            L   ++   ++       +   LI       + + + I+      H +    +      
Sbjct: 14  TLLLSALHTAWVLLGAPPATTRDLIGNLAFFSSYALATILSARAARHLSGRFNRAWTFIT 73

Query: 288 SGIACIAI-----LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
           + + C            + Y  +   S A I        +   I Y       R      
Sbjct: 74  AAMTCWTAGQLTYTIIDARYATVPYPSPAEIGFVLFPPLFLAGIGYMFNAPAGRVQTATF 133

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           A  +  +      + +     N ++    +     I  L+  T +  V A         +
Sbjct: 134 ALDVAIVLLTLASVPVIGLNVNTLLHDHPIVVAQHISNLLLLTTM-MVFALRQPHNPARA 192

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                +LA+L  G            +        +   A GS   P+  W          
Sbjct: 193 YTGWLTLALLLFGTA--------HILYGNLVTRGL--YAVGSPLDPLWVWA--------- 233

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFH-----------WMIIRIRPMSNSNGD--- 508
                L     +R        R      ++            ++ I +  +    G    
Sbjct: 234 ---AALIGLAAHRSVMPATARRATHTGGRWATIAPVVLRLLPYLAITVTFIRAFAGARAT 290

Query: 509 -------ILRYIGIAN-DITEQKKSL--EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                  I   + +A   +TE + +     +   A+ D LTG+PNR +    L  +++ +
Sbjct: 291 GPDTLTLITALLVVARLSLTEYQNAHLQRQLQRQAYLDALTGLPNRAALQRDLPNLIESA 350

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A    +   V+ ID+D++K IND+ G A GD VL     R+   L+  D++AR+ G+   
Sbjct: 351 AMT-GVPLAVLFIDLDRFKPINDLFGHATGDVVLREACARVQRHLRPNDLIARVGGDELV 409

Query: 619 IILISENNSL---KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           ++L   N           A  +   +A P  +  R++T++ASIG A   +    +S  L 
Sbjct: 410 VVLCDLNADAPGATAEHAAARLLDHLAQPFRVDGRQLTLSASIGIAHVPADTTDASTALS 469

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDE 733
            A+LAMY AK  G N   +F+           + D  L  A    E  L Y P++     
Sbjct: 470 YADLAMYQAKQAGRNTHRTFQHDWHHQSSAQFELDAQLQGAAARGEFELHYQPLVDARTG 529

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +   EAL++W +P  G +S ++F+ +AE   +I  I  ++L    R + +W        
Sbjct: 530 TLRSFEALLRWHNPTLGAVSPAQFIPVAETRGLIVPIGEWVLRAACRQLRAWHAA-GYTH 588

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + +N+++      +    ++A +         + +  +ES ++ + E S   L  L  
Sbjct: 589 ARVSVNVSALQFALPDFVRSVEATLRTHGVPGHALAVELTESTLIQDLEASNAKLAALHA 648

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTI 913
           +G+   LDDFGT  S LSYL  +  +T+K + S M     +  A++R+I  +A +++  +
Sbjct: 649 LGVRTALDDFGTGYSSLSYLQRLHVNTLKIDRSFMQAIDGRGGALVRAITHLAHDLDLRV 708

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           + + +     ++ +  +G D +Q  HV+ PL        L+   P ++
Sbjct: 709 VVEGVETAQQLRTVQALGGDTVQGYHVSRPLPVAQAEAFLRAARPALE 756


>gi|168235844|ref|ZP_02660902.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734043|ref|YP_002114731.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194709545|gb|ACF88766.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290976|gb|EDY30329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 660

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKEQDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|197248127|ref|YP_002146327.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211830|gb|ACH49227.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 663

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 125/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKEQDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFIHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F IIL +  +   +  
Sbjct: 274 LDNFKKINDTYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IILAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|122879223|ref|YP_201499.6| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 728

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 224/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         ++ I+ID++K IN
Sbjct: 290 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALVFINIDRFKLIN 348

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RI + L    +LARLSG+ F + L    ++ + +  A  +  S
Sbjct: 349 DSQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQC-SAEQASAVAERVLVS 407

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 408 IANPLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSADMN 467

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P I       + G+EAL++W+HP+ G +S ++F
Sbjct: 468 RMAQERVALEAELRQAIGRDQLQLHYQPQIHSAAPHTLYGVEALLRWNHPQLGAVSPAQF 527

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 528 LQVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLQL 586

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+     PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 587 IADMGVKPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 646

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A++ S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 647 IDELKLDMSFVRDIEHSEDARALITSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 706

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 707 QGYLFSRPLPAAALEAWLGAQ 727



 Score = 78.8 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q         + A+ GS   +   D+    +        + G     + G   + + 
Sbjct: 4   AGEQPEQRRSRLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGQRPSDVL 63

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               +D+     + D     +    + E  V   D    W+ +   P+ +++   L Y+ 
Sbjct: 64  TRAQSDQSEVARVRDRADALQ--HTRAELLVYRKDGTPLWISLNFNPIYDADHTPLHYVA 121

Query: 515 IANDITEQKKSL 526
           +  DIT+ K   
Sbjct: 122 VLTDITDTKMHE 133


>gi|53718716|ref|YP_107702.1| hypothetical protein BPSL1080 [Burkholderia pseudomallei K96243]
 gi|53726249|ref|YP_103785.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|76811415|ref|YP_332721.1| hypothetical protein BURPS1710b_1311 [Burkholderia pseudomallei
           1710b]
 gi|121600737|ref|YP_992052.1| EAL/GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|124383400|ref|YP_001028498.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126449510|ref|YP_001081605.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|254175486|ref|ZP_04882146.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254207822|ref|ZP_04914172.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254260582|ref|ZP_04951636.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254356297|ref|ZP_04972573.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|52209130|emb|CAH35074.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|52429672|gb|AAU50265.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|76580868|gb|ABA50343.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|121229547|gb|ABM52065.1| EAL/GGDEF domain protein [Burkholderia mallei SAVP1]
 gi|124291420|gb|ABN00689.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126242380|gb|ABO05473.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147751716|gb|EDK58783.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148025294|gb|EDK83448.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|160696530|gb|EDP86500.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254219271|gb|EET08655.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 786

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 329 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 386

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 387 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 446

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 447 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 506

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 507 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 566

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 567 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 625

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 626 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 685

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 686 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 745

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 746 RPVPSDGIAALLAR 759


>gi|206602037|gb|EDZ38519.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Leptospirillum sp. Group II '5-way CG']
          Length = 1035

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 254/560 (45%), Gaps = 12/560 (2%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +  + E  S     + D +   D     V        I G +   + G     L      
Sbjct: 468  LEKNREIASKVFDMASDGILITDSENRIVLVNRAFTEITGYSQEEVKGKNPRILSS-GRQ 526

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            D   ++T+    +    G  Q E   R    + +   + I    + NG I  +IGI +D+
Sbjct: 527  DAFFYQTMWHELLAN--GYWQGELWNRRKSGELYPEWLSISTRKDKNGRIENHIGIFHDL 584

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T  K+S E I   A+ D LTG+PNR    DRL   L  +          +++D+D +K +
Sbjct: 585  TGVKESEERIAFLAYHDPLTGLPNRVLLRDRLEYALRQTTRTGKDLGI-LLLDLDGFKNV 643

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND+ G  VGD +L+ ++RR+   ++  D + R+ G+ F I+        +++     + +
Sbjct: 644  NDLSGHHVGDLLLMEVSRRMAGAVRTSDSVGRMGGDEFLILFPDLTGLEELSSIMDRLLE 703

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +  P  +    +T+TAS G   +        +++++A++AMY AK+RG N +  + +S 
Sbjct: 704  QVRHPFEIEGHSVTLTASGGVTLYPRDNAGIDDLIRHADIAMYSAKNRGKNRIHFYELSM 763

Query: 700  FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +S R    +K++L  A++N  L+L+Y P I +    ++G EAL++W HP    +  ++F
Sbjct: 764  EQSLRSRETLKQELTRALQNGHLHLLYQPQIDIRTGVLIGAEALLRWFHPDGIRLP-ADF 822

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            +   E   +   +  ++L    R  + W+ +       I +NI+ +      L + ++ L
Sbjct: 823  LGTIENDDLSIELGRWVLGEALRQHLQWKQEG--QFFRIGVNISPRHFGSGVLEQDLKNL 880

Query: 818  ISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +        S ++L  +E+ ++ +    +  +   R++G+ +  DDFGT  + L+ +  +
Sbjct: 881  VDVRGIEDLSGLELEITENTLVSDLGEVQKTVRACREMGVHIAFDDFGTGYTSLTMVRTL 940

Query: 877  PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              DT+K + S +          +IL SI+ + +  +  +I + +    ++  +  +G   
Sbjct: 941  CPDTLKVDQSFLRSITENPGNRSILESILKIGQGFQAAVIMEGVENARELGLVREIGYHC 1000

Query: 935  IQDSHVASPLGFNSILKLLK 954
            IQ   V+ PL  +     L+
Sbjct: 1001 IQGYLVSPPLLPSQFSSFLQ 1020



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 11/186 (5%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
             +L+ +   G        ++  +    L     +  +          L   +  Q +  
Sbjct: 283 GAVLLRLPVFGFSDHALGFVELVVSGDQLSLDRDMPFLSTLLAQNGVSLENAFLVQALSR 342

Query: 403 DGERQSL---AVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              R  +       S   +   D ++     +        + G +     G    +L   
Sbjct: 343 SESRLRVFQKTFESSTASLCICDALQPDFPIIFANDMFFRLTGYSRAETVGKNCRFLQG- 401

Query: 457 HINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              DR+   RT +   +   +  ++   R    D       + + P+++ +G +  Y+GI
Sbjct: 402 --ADREQKSRTEIREALKAGKA-IRTLIRNYRMDGTPFMNELSLFPITDPDGTVTHYLGI 458

Query: 516 ANDITE 521
            ND+T+
Sbjct: 459 QNDVTD 464


>gi|90581541|ref|ZP_01237334.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           angustum S14]
 gi|90437303|gb|EAS62501.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           angustum S14]
          Length = 690

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 218/439 (49%), Gaps = 10/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+    I      D LTG+ NR  F  +L  ++            ++ IDID +K IN
Sbjct: 256 DNKRQQGQIEQLVQMDPLTGLLNRHGFTRQLDQLMKA-----ETPVVMLYIDIDNFKNIN 310

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD VL  + +R+  LL    IL  LSG+ F I+L +  +       +  +   
Sbjct: 311 DSLGHHIGDKVLQEIAQRLRRLLPETAILGYLSGDEFAILLPNPEHERTGEIISEQIIAL 370

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +  P  L      +  SIG  +       +  ML+NA+ AMY AKHRG N +  F   +S
Sbjct: 371 VNQPFELRHFRKHLACSIGMVTSPGHGNDARMMLQNADTAMYEAKHRGRNRLVEFNDAMS 430

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L  A++N+ L + Y P +   D  I G EAL++W HP  G IS ++F+
Sbjct: 431 KEARMRLWLEIELQKALQNNGLEVWYQPKVNARDFAIDGAEALVRWKHPVEGYISPAQFI 490

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I+ +   ++  +   +  W+ +  +    + IN++ +   ++ L   +  L 
Sbjct: 491 PVAESSGLIEQLGCAVMREVFTTVSLWKKRKLLTG-RVAINLSPQQFGNSGLINFVDKLR 549

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T  +P+ I    +ES VM + E +  +L  ++++G +L++DDFGT  S LSYL   P 
Sbjct: 550 LSTDINPADITFELTESAVMSDGEHTIQMLNAIKQLGFALSIDDFGTGYSSLSYLARFPL 609

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +       K++ ++ +II + K+++ +++A+ I        L+ + CDYIQ
Sbjct: 610 DELKVDRAFIQDIDTIPKQVTLIENIINLGKSLKMSVVAEGIETRQQATLLSNLNCDYIQ 669

Query: 937 DSHVASPLGFNSILKLLKE 955
             H   P+  + +  +L +
Sbjct: 670 GFHFYRPMPKHELEAILLQ 688


>gi|297516107|ref|ZP_06934493.1| RNase II stability modulator [Escherichia coli OP50]
          Length = 644

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 86  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 139

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 140 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 199

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 200 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHA---DNNKVGVVYLD 256

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 257 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 315

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 316 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 375

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +   A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 376 CVFTPEMNQRVFEYLWLDTNFRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 434

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 435 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 492

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 493 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 552

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 553 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 612

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 613 KNGINERQGFLFAKPMPAVAFERWYKRYL 641


>gi|167918107|ref|ZP_02505198.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei BCC215]
          Length = 772

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|304394572|ref|ZP_07376491.1| diguanylate cyclase/phosphodiesterase [Ahrensia sp. R2A130]
 gi|303293233|gb|EFL87614.1| diguanylate cyclase/phosphodiesterase [Ahrensia sp. R2A130]
          Length = 682

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 107/464 (23%), Positives = 217/464 (46%), Gaps = 23/464 (4%)

Query: 500 RPMSNSNGDILRYIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
                 +G   R +   +D++E       +++++E     A   +LTG+PNR +   RL 
Sbjct: 200 TVTRLDDG---RRVVTMHDVSEHARALEERERAVERADHMAMHCSLTGLPNRAALTHRLE 256

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +  +        TV+++D+D++K+INDV G   GD +L   + R+       + L R+
Sbjct: 257 HAVAKADA-GGTGFTVVILDLDRFKEINDVHGHQAGDKLLQEYSHRMNRCCGNKEFLGRM 315

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++     +S +       +    A P ++  R++ + ASIG A +        +
Sbjct: 316 GGDEFVMVCE---SSDRGEGLISRLETVFADPFSIEGRQVFMRASIGLADYPEHGRNVGD 372

Query: 673 MLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +L NA+ AM+ +K  G      +   +      R  +  DL  AVE   +   + P +  
Sbjct: 373 LLSNADTAMFRSKANGNVPYLRYNSEIDQQTRYRRRLLVDLKEAVEADVIEPHFQPQVCS 432

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              ++ G EAL +W  P+ G +   EF+ +AE    I  I   +L +  ++ +SW +   
Sbjct: 433 RSGKLRGFEALARWHDPERGYVPPFEFIELAENNGFIDIIGRSILRKACQEAVSWPN--- 489

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + +NI++  + D      + + + +T    +R++L  +E+V++ + +++  +L  
Sbjct: 490 --DLMVCVNISAAQISDPGFARLVHSTLLETGLPATRLELEVTETVLIDDFDKALFVLRG 547

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908
           ++ +G++L +DDFGT  S L+ L   PFD +K +   ++G         ++R+ I +A++
Sbjct: 548 IKDLGVALAIDDFGTGFSSLTTLASFPFDRLKIDRFFVSGLGNDERLSTVVRACISLARS 607

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++  +IA+ +      + L  + CD  Q      PL   +   L
Sbjct: 608 LDLEVIAEGVETVEQAEALAALDCDQFQGYLYGRPLDAAATRAL 651


>gi|300869039|ref|ZP_07113641.1| putative Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Oscillatoria sp. PCC 6506]
 gi|300332950|emb|CBN58835.1| putative Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Oscillatoria sp. PCC 6506]
          Length = 581

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 238/455 (52%), Gaps = 6/455 (1%)

Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              L ++    D   Q + + E +   AF D LTG+ NR  F++++   + +S    + R
Sbjct: 125 NKTLGFVREVRDNQRQLQAAQEQLRYQAFYDALTGLLNRNGFIEQIEVCIHISQEQLSNR 184

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +++D+Y+ +   LG  VG+++L    RR+   +    I+AR+  + F I+L   +
Sbjct: 185 FAILFLNLDRYQVVKFTLGHGVGEELLKQTARRLESCMPQTAIIARVGSDEFAILLKDIS 244

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++ + ++ A A+ +++  P  L E  ++ T SIG A  +   +   ++L+ A+ AM++A 
Sbjct: 245 DNQQASNIASAIHRALETPFVLEEVAVSSTVSIGIAHSSLEGLEPEDLLRAADTAMHYAV 304

Query: 686 HRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +       F          R+ ++ DL  AV N +L+L Y PI  L+DE+IVG EAL++
Sbjct: 305 VQSKGSTAVFNPGMLAGAISRLELEADLQRAVFNEQLHLNYQPIFSLVDEQIVGFEALVR 364

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIAS 802
           W H   G +S +EF+ +AEE  +I ++  ++L      +  W +Q     P+ + +N++ 
Sbjct: 365 WRHKVRGMVSPAEFIPVAEETGLILSLGAWVLSEAMGCLRIWLEQFPNVRPLSMSVNLSG 424

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L   +L   ++ L+++   S   +KL  +ES+ M N   +  LL  L+   I  ++DD
Sbjct: 425 IQLSSPDLVMLIEELLAQFSLSGESLKLEITESMFMENAGAAGQLLAELKAKQIQFSIDD 484

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL ++P DT+K +   ++G     K   I+++II +A ++E  ++A+ I  
Sbjct: 485 FGTGYSSLSYLHHLPIDTLKIDREFISGMVGDSKDFDIVKTIIALAHSLELDVVAEGIET 544

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +  L  +GC+Y Q    + PL   +  +LL  
Sbjct: 545 QEQLNRLRELGCEYGQGFFFSKPLDVEAAGELLAS 579


>gi|123442529|ref|YP_001006506.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089490|emb|CAL12338.1| putative phosphodiesterase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 864

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 220/441 (49%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S + I   AF D+LTG+PNR  FL      + L+A  ++    V+VI++D++K++N
Sbjct: 425 ERELSRKQIQHLAFYDSLTGLPNRTQFLVYAKQAIALAAEMNH-PLAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++L ++ +R+ + L   DI+ RLSG+ F I+L S     +       M   
Sbjct: 484 DSLGHAAGDELLAAMAQRLRDSLPKNDIIGRLSGDEFIIMLTSCT-MQQTTVRVEKMLSL 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +AS+G + +  + +    ++ +A++AM+ AK+ G  H   F     
Sbjct: 543 LSQPCQIANMNIIPSASVGISLYPENGMEMDTLMNHADIAMHKAKNMGRGHFNFFSAEMN 602

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++  +  ++ L  A     L L Y P + L D  + G+EAL +W HP  G+I    F+
Sbjct: 603 NLNQQRLDMEDALRHAFHIGSLELFYQPQVMLKDGHLYGVEALSRWKHPILGDIPPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L+ +E   R +  WR +    P  + +N++  +  +  L + +  ++
Sbjct: 663 PLAEESGLINELALWAIETACRQLADWRLRGIDVP-SVSVNLSPTNFHNLGLPDMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 HHYHLPPQDLTLEITEDILIENNPTIFTTIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E    +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEYDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYLIGQ 841

Query: 937 DSHVASPLGFNSILKLLKERF 957
               +  L    + K L+ R 
Sbjct: 842 GFLFSEALPAIKLEKWLEHRL 862



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 32/205 (15%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-----NDRDNF 464
           A+  S   + ++D+    +    +     G     + G     L + H      ++    
Sbjct: 26  ALDHS-LAIIEFDLSSRIIEVNQNYLDYFGYQRDEVIGQYH--LMFCHPGYANSDEYQKI 82

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---E 521
           +T L +        L+  F     D    W+    +P+S  +G + R + IA +IT   E
Sbjct: 83  KTSLLA-----GQSLEGRFERIHKDGSRVWLAAIYQPVSGPDGSVTRIVKIAKNITFLIE 137

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q+++ +  +       LT +       DR  + + ++A  +  +  V  I+   + K+  
Sbjct: 138 QQRATQEWVQL-----LTQL------TDRSDSAMFIAANSEQGQQAV-YIN-QGFTKL-- 182

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP 606
             G      +  ++   +       
Sbjct: 183 -FGYTPAQALGQNMVDLLQSAHPEQ 206



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G    + L   H                 R+  L  E    
Sbjct: 173 VYINQGFTKLFGYTPAQALGQNMVDLLQSAHPEQLALIDAT---SPEARQQLLPKEL-FY 228

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + D Q HW    I  + N +G+    IGI  DIT  K   
Sbjct: 229 SKDRQPHWCSAVINSLVNEHGEQSYSIGILTDITMTKMYE 268


>gi|54297125|ref|YP_123494.1| hypothetical protein lpp1170 [Legionella pneumophila str. Paris]
 gi|53750910|emb|CAH12321.1| hypothetical protein lpp1170 [Legionella pneumophila str. Paris]
          Length = 768

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 220/433 (50%), Gaps = 6/433 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K   E +   A  D LT + NR+ F D L   +  +  + N    +++ID+D +K IND
Sbjct: 313 LKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRN-NSSLALLLIDLDNFKAIND 371

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD++L     R+  L++  D+L+R+ G+ F +I ++  +       A  +   +
Sbjct: 372 TFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNEL 431

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  + ITVT SIG + +     T+ ++L+ A+LAMY AK+ G N  + +      
Sbjct: 432 NSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGY 491

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S      ++  L  A++N E  L Y P   L++ EI+G E L++W++   GN+S +EF+ 
Sbjct: 492 SQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKALGNVSPNEFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  ++ ++LE+    I+ W +Q N   +   INI+   L + +  + ++ ++ 
Sbjct: 552 VAENTGLITELSQWVLEKSCAQILHWTNQYNKM-LSFSINISPVQLTNPQFPKILERILQ 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  Y    ++L  +E+ +MG+ +    +L  +  +GI L+LDDFG + S L+ L  +P D
Sbjct: 611 EYQYPAEYLELEITENSLMGDQDEISAMLNVISGLGIKLSLDDFGKEYSSLNRLKTLPID 670

Query: 880 TVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K + + ++    +   ++    II +A  +  +I+A+ I     +K L    C + Q 
Sbjct: 671 SLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQG 730

Query: 938 SHVASPLGFNSIL 950
             ++ PL  N   
Sbjct: 731 FLLSKPLTANEFT 743


>gi|322834728|ref|YP_004214755.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella
           sp. Y9602]
 gi|321169929|gb|ADW75628.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Rahnella
           sp. Y9602]
          Length = 697

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 150/656 (22%), Positives = 279/656 (42%), Gaps = 34/656 (5%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           A    I + S+              GY+  + L+   I I      LW+   + L    +
Sbjct: 48  AIAMGIGIWSMHFIGMLAFNASMPMGYDPLITLLSMLIAIISSAFALWLVCLEELPTGRL 107

Query: 368 QPA--LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
                L+GG +  +   G   +Q +    Y  + +        +A++ SG  +W   +  
Sbjct: 108 LAGALLMGGGIAAMHYTGMAAMQMMPPIVYDYRWVALSV---GVAIVASGAALW---MAF 161

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIH------INDRDNFRTILDSFVGYRRGRL 479
           +    +P++  +L +++  + G     + YI         D  +               L
Sbjct: 162 NLRHQSPNV-RLLRISAAVVMGAAIVGMHYIGMAAAQFPMD-SHSMAAFSGVDNNWLALL 219

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
                +         ++     +S  +G +     I    +   ++   +   A  DNLT
Sbjct: 220 VIVVTLA--------ILAITLIISILDGRMQARTSILA--SSLAQANRELTQLALHDNLT 269

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PNR    DRL+     ++  ++ +  V+  D+D +K +ND  G  +GD +L+S+T R+
Sbjct: 270 HLPNRLLLEDRLSQAFQKASRGES-QFAVLFFDLDGFKAVNDAFGHHIGDQLLISVTERL 328

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+  D LARL G+ F  +L+        +  A  +   IA P  +   E+ V+AS+G
Sbjct: 329 QSQLRATDTLARLGGDEFV-LLVEITEPTDASQLADKLVHLIARPFYVSRYELLVSASVG 387

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVEN 717
            A +        E++ NA+ AMYH K+ G N    F+ S      +++ +  DL LAV +
Sbjct: 388 IAVYPGDGENERELMLNADAAMYHTKNSGRNGHSFFQPSMNANAQNQLQMLNDLRLAVAH 447

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            EL L Y P        + G EAL++W+      +S   F+ +AE+  +I  I  ++L  
Sbjct: 448 HELRLHYQPKFIAPYGPVSGFEALLRWER-DGNLLSPDVFLPLAEKTGLIIPIGEWVLNE 506

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R +  W   A      + +N+++       L E +   I +    P  + L  +E+  
Sbjct: 507 ACRQLREWH-LAGHTQWTVAVNLSTLQFEQANLVEMVIETIERHQIPPEMLTLEVTETTA 565

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           M NP+ S  +L RL + G+  ++DDFGT  S L YL  +P   +K +G+ +       + 
Sbjct: 566 MRNPDASVEILERLTQYGVKASIDDFGTGYSSLLYLKRLPASELKIDGAFINDLIAGSED 625

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +I+ +II + + +   ++A+ +      + LT++GCD +Q   +  P+    I +
Sbjct: 626 ASIVSAIIALGQTLNLKVVAEGVETIQQQEFLTQLGCDTLQGYLLGRPMTPQQIAQ 681


>gi|290508701|ref|ZP_06548072.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
 gi|289778095|gb|EFD86092.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
          Length = 614

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 197 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGC-AVVMLFDLDSFKDVNDTLGH 255

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  + L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 256 DAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALER-ANVIREKISQPY 314

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 315 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 373

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 374 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 433

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I  +  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 434 IGLINTLGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIGVLQQTGL 488

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR+ GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 489 DPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRLSYFPFDKIKI 548

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 549 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLTSLQALGCDLVQGYLIG 608

Query: 942 SPLGF 946
            P   
Sbjct: 609 KPSPL 613


>gi|289670595|ref|ZP_06491670.1| putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 786

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 222/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 347 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 405

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 406 DSQGHAAGDGLLRDIALRVNDQITATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 464

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 465 IASPLPVGHMTVHPSASIGVAMFPEDGHDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 524

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 525 RMAQERVALEAELRQAIGRDQLQLHYQPQMHSAAPHALYGVEALLRWNHPQLGAVSPARF 584

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R    +  WR Q  +P   + +N+++       +   +  L
Sbjct: 585 LPVAEEQGMMPQLNAWVLRRACEQVADWR-QRGVPVARVSVNLSASGFESPRMLPDLLQL 643

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++    PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 644 IAELGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 703

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 704 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 763

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 764 QGYLFSRPLPAQALEAWLGAQ 784



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q         + A+ GS   +   D+    +        + G     + G    + L
Sbjct: 61  AGEQPDQRRARLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVL 120

Query: 454 PYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    R   D+    R   L     V   D    W+ +   P+ ++N     
Sbjct: 121 TRAQSDQSEVARVRDRADALQHTRADLL-----VYRKDGTPLWISLNFNPIYDANHAPSH 175

Query: 512 YIGIANDITEQKKSL 526
           Y+ +  DIT+ K   
Sbjct: 176 YVAVLTDITDTKMHE 190


>gi|56459988|ref|YP_155269.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178998|gb|AAV81720.1| Signaling protein with a ligand binding sensor domain, GGDEF and
           EAL domains [Idiomarina loihiensis L2TR]
          Length = 739

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 224/452 (49%), Gaps = 7/452 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I + ++I E+++  + +   A  D+LTG+ NR +    L   L+      + +  ++ ID
Sbjct: 286 IELYSEIDERERIEKQMAYLAEHDSLTGLVNRNALKRILGEWLET--ESPHKKAALLFID 343

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K++ND LG  VGD++L  + RRI +L     +LAR  G+ F + +   ++   I  
Sbjct: 344 LDRFKEVNDALGHTVGDELLRRVARRITKLAPKGSVLARAGGDEFLLAIAKPDSRESIIK 403

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            +  M +++     +   E+ ++ASIG      +   +   ++NA+ A+Y AK  G N  
Sbjct: 404 LSEQMLQALDTHFFVDVYELFISASIGVTFADDADFNAEYFIRNADTALYQAKEHGRNTY 463

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + +  +  R     ++  + L  AV   +L + Y P + L    I GLEAL++W      
Sbjct: 464 KVYDKAIHRDLTKKLELVKRLRHAVSKQQLTVYYQPKVELGSRRISGLEALVRWVDDDGS 523

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+ +AE+  +I  I+ +++E     +  W +      + I INI+ K L   +L
Sbjct: 524 IIPPDEFIPLAEDTGLIIPISEYVMEEAFLQLKQWHELGFDE-LSIAINISGKQLHLADL 582

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +   +++    P++++L  +E V + N +     +  +R+ G+SL +DDFG   S L
Sbjct: 583 VDDIMERVNEAQIPPNKVELELTEQVFIENIQSHTRFMHSVREQGMSLAIDDFGVGYSSL 642

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL   P  ++K + S +      E    I ++II +A+N+   ++A+ I  E  ++ L 
Sbjct: 643 SYLKNFPVTSLKIDRSFVRDLPHNEDDATITQTIISLARNLNLQLVAEGIETEEQVEFLL 702

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           +  C   Q    + P+    I +LL++   L+
Sbjct: 703 QRECSTGQGFLFSKPVPARQITELLQQYKGLI 734


>gi|188991299|ref|YP_001903309.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167733059|emb|CAP51257.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 705

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 229/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L  + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLHTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+  + RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFSSRISRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + +L  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVTLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDANDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I  S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIPPSTFIDIAEQSGLIEVIGPKVLRAACLEAAKWP--VVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +FI +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFISVNVSPRQLRSGDLIDTVAECLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIIGMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRDRGCDLGQGYWFSRPLSPADMVKLIAA 704


>gi|186476535|ref|YP_001858005.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184192994|gb|ACC70959.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 609

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/546 (21%), Positives = 236/546 (43%), Gaps = 24/546 (4%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  +      +G     +     +    +   D       L           +    +  
Sbjct: 63  LYVSDASLRFIGYHREYLQTVTLH--ELVAPGDVARLDAALRRA-DESGAVEKITLDLIK 119

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           +      + +RI    N +  I  Y     D++  + +   +      DNLTG+ N  + 
Sbjct: 120 SLTYPVPVELRIA--RNCHDGIEGYAIAGFDVSSWRATEASLKHQLHHDNLTGLANVPAL 177

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           ++ +      +         ++++DID Y+++N  LG   GD++L    RR+  +    +
Sbjct: 178 VEEMRHAQQKADATGK-SAALLLLDIDDYQRVNRALGYDAGDEMLRDTARRLSNMTTQGE 236

Query: 608 ILARLSGNRFGIILISENNSLK----IADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           ++AR+S + F I+L   +            A  +  +I  P     + + ++AS+G A +
Sbjct: 237 VIARISSDEFAILLPPVHARADTALAAEALARRLLTAIQQPYTFNRQPVHLSASVGIALY 296

Query: 664 TS---SKITSS------EMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
                +  +        ++L+ A+ A+  AK  GGN +  +        ++R+ ++ DL 
Sbjct: 297 PDTQQAGESPDAPPRDSQLLRWADYALSRAKAAGGNTLAFYMPDDSPADAERLKLESDLY 356

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             V N E  L + PI       +VG+EALI+W HP  G +  S F+ +AE + +I  +  
Sbjct: 357 DGVRNGEFSLHFQPITSSQTRGVVGVEALIRWQHPVHGLVPPSMFIPLAESVGLINYLGN 416

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+     +I W  Q      ++ +N++ +   D    E ++  I+ T   P R+    
Sbjct: 417 WVLKAACMQLIRWDTQGIRLQ-YVAVNVSPQQFRDPRFKESVREAIALTGIDPHRLVFEI 475

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES++M +P+ +  LL  L  +GI   +DDFGT  S L+YL   P   +K + S +    
Sbjct: 476 TESLLMHDPQHATTLLEELTGLGIRFAVDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLL 535

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ   V   L    + 
Sbjct: 536 TSRNDQAIVSAVVGLAQTLDLELVAEGVETEAQRDLLTEMGCDHIQGWLVCKALPSEELA 595

Query: 951 KLLKER 956
           +  + R
Sbjct: 596 QRFESR 601


>gi|209549885|ref|YP_002281802.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535641|gb|ACI55576.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 550

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 129/530 (24%), Positives = 237/530 (44%), Gaps = 25/530 (4%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P +  +LG    +   P  +   +    D+        S     +       R+    
Sbjct: 32  FNP-VENLLGNELPASVKPATSLWEHFPQLDKSAITLAFRSLDDSAQP-----LRISGDL 85

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                  + I  +    G++   +     + +++ +L   L  A  D LTG+PNR+ F D
Sbjct: 86  GGPGAHGLTIYRI----GELFAVVRSDELVDDERATL---LHLATHDPLTGLPNRRQFSD 138

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L  +L  +A  D    ++M +D+D +K +ND LG   GD +L    RRI + L   D  
Sbjct: 139 DLAVLLQETAGSDET-LSLMQLDLDDFKPVNDTLGHPAGDKLLQFAARRIQDCLTSDDRA 197

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            RL+G+ F +I     +  K    A A+  +   P  +    + V  SIG ++       
Sbjct: 198 YRLAGDEFTVISRGSGHPAKAHRLAEALVAAFKKPFTIDGIAVFVGTSIGISTAPPDGTN 257

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPI 727
             +++K ++LA+Y AK  G    +++  +              L +A++  + ++ Y P+
Sbjct: 258 PEQLMKASDLALYAAKQDGRGRAKAYDPAMLELLEQRELLRRSLRMALDQQQFFVEYQPL 317

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  IVG EAL++W HP  G I  + F+ +AE   M+  I  ++LE+  R+ + W +
Sbjct: 318 --AEGSRIVGFEALLRWHHPLLGKIPPAAFIPMAEADGMMPDIGAWVLEQACREAMKWPE 375

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   + +N+++ + L + L + +   +      P R++L  +ESV++     +   
Sbjct: 376 NYI-----VAVNVSAAEFLTSGLTDRISQTLDLVGLPPERLELEITESVLLERTVNNIDT 430

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L  L  +GI ++LDDFGT+ S LSYL   PFDT+K +   +T      K   I+R ++ +
Sbjct: 431 LNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDPKSQTIVRCVVNL 490

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A  ++  + A+ +      + L  +GCD +Q   V+ PL   +I + +  
Sbjct: 491 AHGLDMQVTAEGVETPAQAEWLHSVGCDRLQGYLVSRPLPVEAIGEFIDR 540


>gi|172058460|ref|YP_001814920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171990981|gb|ACB61903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 941

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 235/573 (41%), Gaps = 14/573 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGS 444
           ++  +       + +  + E+           +   D+    +   +     I       
Sbjct: 260 ILYDLSEVSEARRELAREREQTREIYEALEAAISQIDLSTGHLLFHSKGFFQIFEELPHD 319

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +          +   D    +  +      +   +Q  +R+   D +  W+  +  P+  
Sbjct: 320 LILSRDWLFERLDPRDVPAMKQFIRRLTSGKPSTIQ--YRLLFPDGRMKWIEDQQIPVFQ 377

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G I     I +DIT QK+  E +   A  D++TG+PNR S  D +   +       N 
Sbjct: 378 LDGSIAYTNSIMHDITLQKEYEERLQQLAMYDSITGLPNRLSLTDTIRNWMQA-----NT 432

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +++ I  ++   IN+  G A GD  + + +  +            L G+ + +++ S 
Sbjct: 433 PFSILSISFNRISDINNAFGHASGDQWIQATSALLNRSRPDEVFFGHLGGDEYAMLVPS- 491

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +    I  +A  +      PI +    +    SIG + +        E++K++  A+  +
Sbjct: 492 SLKDDITSYAETLLSLSVEPILIDPYALFTRVSIGISRFPDDSNDPIELMKHSYTALRRS 551

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           +    + V  +  +          +++DL  A+E  +L+L Y P +     +I+GLEALI
Sbjct: 552 RRENQSAVHHYASNLDIDYYRRYRLEQDLHYAIERKQLFLEYQPKVDSWTGKIIGLEALI 611

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+WG I  ++F+ +AEE  +  AI  +++E   + ++ W        + + +N++ 
Sbjct: 612 RWQHPEWGRIPPNDFIPLAEESALHIAIGDWVVETACQAMLDWSSAGADL-VPVSVNVSP 670

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K  L       ++ +++        ++L  +E+ ++ +       L  + ++G+ + LDD
Sbjct: 671 KRFLIPGFEHQIEQILAAYHLPAELLELEITEAALIMDDPNISRTLEHVSRLGVRIALDD 730

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S + YL   P D VK +    T   E     AI++SI+ MAK     +IA+ I  
Sbjct: 731 FGKGYSSMVYLQRYPIDVVKIDRQFATHIAEDTKAQAIIKSILYMAKEFNLAVIAEGIET 790

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++    + C  IQ    + P+    +   L
Sbjct: 791 IQQLETFRALECPNIQGYLFSRPVSAAVMESFL 823



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            S  ER       S D V+ ++ + + +     +  +LG +  +++     + P      
Sbjct: 25  LSRPERVEPFFQQSTDAVFFFNHLGEIIYFNEQLPRMLGYSKETLYNHFAVFNP---PEQ 81

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             +     +  +           +   AD     + I   P+   +G ++   GIA DIT
Sbjct: 82  HASVTAFFERALAGETVHYTA--QGLHADQHRLTLKITNMPI-EQDGHVVGVYGIARDIT 138

Query: 521 EQKKSLE 527
            +K+  +
Sbjct: 139 REKQLED 145



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 60/204 (29%), Gaps = 16/204 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + + + +         +     +  L       +V+ +D     +  +P +   LG+ S 
Sbjct: 131 YGIARDITREKQLEDDVVHIRSQLELTEQIPELVVFHYDPTSRTIEYSPSLIKYLGIESN 190

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +           IH  D D  R  +   +       + E  V  AD ++  + ++    
Sbjct: 191 PVQPFTNEQLHQRIHPRDFDPLRFQMIRLLDGEIDTFEQEVSVLNADYEYQLLRLKALRR 250

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G I   +   ++++E ++ L                  +   + L   +       
Sbjct: 251 DGPTGLISLILYDLSEVSEARRELAREREQT-----------REIYEALEAAISQIDLST 299

Query: 563 NLRPTVMVIDIDKYKKINDVLGIA 586
                 ++     + +I + L   
Sbjct: 300 GH----LLFHSKGFFQIFEELPHD 319


>gi|227822959|ref|YP_002826931.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium
           fredii NGR234]
 gi|227341960|gb|ACP26178.1| putative GGDEF/EAL domain transcriptional regulator [Sinorhizobium
           fredii NGR234]
          Length = 784

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 144/734 (19%), Positives = 280/734 (38%), Gaps = 32/734 (4%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW-RACSEIALSSSLIIFLFMYLHWNRW 278
              A A  V  + +     L+    +P    +      + +A+ +S + F       +R+
Sbjct: 51  AACAFACGVGVWSTHFIAMLAYDGGVPIAYDVWGTVFSALVAVVASGLAFSTALAGTSRY 110

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASI-----ARITLASIVLYYTYFIIYHGMKG 333
                 I          +  M                    L   ++       +  ++G
Sbjct: 111 AFPGAGIFLGLGIAAMHVTGMRAVEAQGRIDFDPQMDFAAVLVGPLVAAFALHSFQVLRG 170

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
             + ++     +L         M+    + +  +        V +   +       +L  
Sbjct: 171 ARKLIVPTLLLVLSICVLHFTSMSGITLVPDPSVAATNAFDPVWLAGGVVVASTTLILTA 230

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                      + + LA      +V   +     +        + G  +  + G     L
Sbjct: 231 LGALFIDRHLTDLRGLANASLEGMVIVCN--GRIIDANERFVGLCGAKAADLIGRRPEEL 288

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            ++    R+            +      E  +  AD +   +    R +    G     I
Sbjct: 289 -FVSPQGRER-----------QIESGSAEVELICADGRLVPVEHVCRTI-EYRGRQSDVI 335

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D++ +K++   I   A  D LT + NR SF  R++  L ++A   N +  +  +D+
Sbjct: 336 -FVRDLSARKEAERTIEHLAHHDALTDLSNRSSFERRMSQALTVAAAR-NEQLAIFCLDL 393

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND+ G   GD +L  +   +       D +ARL G+ F I+             
Sbjct: 394 DRFKAVNDIFGHGEGDRILRKVADILRAAAGEADTIARLGGDEFAILQTGAAQPEAARQL 453

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +  + +  A  ++     + V  S+G A +     T+  +  NA+ A+Y AK  G     
Sbjct: 454 SDRILRLFAEEMDTHRDPMAVGVSMGVAVYPGDGTTAERLCSNADTALYRAKQSGKGIAC 513

Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F          R  ++ DL  A+   +L+L Y P++ + D+ +VG EAL++W HP+ G 
Sbjct: 514 FFDAEMDDAVRSRRQMESDLRHAILRRQLFLEYQPLVDVGDDRVVGYEALLRWRHPERGL 573

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +  + F+ IAEE   I  I  ++LE    + + W +     P+ + +NI+    L   L 
Sbjct: 574 VGPNIFIPIAEESGSIIQIGEWVLEEACAEAVRWTE-----PLPVSVNISPVQFLVPSLF 628

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  ++ +T   P R++L  +E+ +M N +     L RLR +G+ + +DDFGT  S L+
Sbjct: 629 DQIAGILRRTGLEPRRLELELTEAALMHNRQDVLAALVRLRLLGVRIVMDDFGTGHSSLA 688

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   PFD +K + S            AI+R+II +  +++  ++ + +  E   + +  
Sbjct: 689 NLQTFPFDKLKIDCSFTAALDKDPAAHAIIRAIIALGHSLDLPVVTEGVETERQKQIIVE 748

Query: 930 MGCDYIQDSHVASP 943
            GC  IQ      P
Sbjct: 749 EGCRQIQGFLTGRP 762


>gi|320199323|gb|EFW73914.1| hypothetical protein ECoL_03423 [Escherichia coli EC4100B]
          Length = 652

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 94  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 147

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 148 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 207

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 208 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDYAINHA---DNNKVGVVYLD 264

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 265 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 323

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 324 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 383

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 384 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 442

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 443 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 500

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 501 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 560

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 561 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 620

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 621 KNGINERQGFLFAKPMPAVAFERWYKRYL 649


>gi|217419624|ref|ZP_03451130.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217396928|gb|EEC36944.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 772

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ +AE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISVAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|254447731|ref|ZP_05061196.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
           proteobacterium HTCC5015]
 gi|198262511|gb|EDY86791.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
           proteobacterium HTCC5015]
          Length = 787

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 130/750 (17%), Positives = 277/750 (36%), Gaps = 36/750 (4%)

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288
           +G +    GF+   V L +      +    + + S+ I  L + L  +R       +  +
Sbjct: 38  MGVMGALLGFILGSVMLATLFWQTKQFSQPMLVLSAFIALLPVSLLLSRHMRSCAPLCIA 97

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
            +  +  +  ++ Y      S        + +  T+ +     +      LL  A  L  
Sbjct: 98  TVLAMLAILSLAGYSYGGGYSSTLHWFPLVPVAATFMVG---RRFGLVTSLLTLACALAI 154

Query: 349 IWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGFT-----------VIQHVLATG 394
            W     +    R+ +     I P +    +L   L+              +        
Sbjct: 155 YWLELNGVTSDYRMTSSELLDIAPYVTVAAILFATLLSEAYEWANDESRRVIKTEREQRS 214

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q + +  E+  + +    D V   D         P  A + G       G   + + 
Sbjct: 215 AAEQALDTQKEQSLVTLEAIADGVISTDEQDRITYINPIAAYLTGWPVERAMGRSLSEVF 274

Query: 455 YIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            I      +     LD+ +     +      + + D +   +   I  +      +   +
Sbjct: 275 MIFDEYTHEPQGNFLDNCLKEGANKPIGHHILLSYDGREIIIEHHISIIRGHENAVRGLV 334

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            + +D+T +++    +   A  D L+ + NR  F  +L  ++      D     +  IDI
Sbjct: 335 VVFHDVTVERELTTQLRYQATHDPLSDLLNRHEFEHQLQQLVSQPI--DKQHHVLCTIDI 392

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           +++K IND  G   GD+++      I +     DI  RL G+ FGI++I  N    +A  
Sbjct: 393 NQFKVINDTCGHNAGDELIRQFADLIRDDALERDITGRLGGDEFGILIIGTNTEDAVARI 452

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                +      N  ++  +++ +IG      +    ++++ +A+ A   AK +G N + 
Sbjct: 453 KKLRERISDFHFNWEDKSFSISVAIGVVEIDGNTDYLADLMNDADAARQAAKEKGRNRIH 512

Query: 694 SFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPK 748
            ++        R   +     L  A+ ++   L    I+ L + E     E L++     
Sbjct: 513 VYQPDDHELMRRRGEMRWAAYLNGAIADNRFLLTRQTILPLQEHEKGQHYEILLRCLDES 572

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN---MPPIFILINIASKDL 805
               S+ +F+  AE   +I  I+ ++     R +++W +           + IN++++ +
Sbjct: 573 GKISSAGDFLNAAERYNLISEIDRWV----VRHLVTWFESTPTAMEATHTVSINLSARSI 628

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +D+   + ++ ++ +      ++    +E+  + N  +++  +  +R +G S  LDDFG 
Sbjct: 629 IDSRFTQDLREMMLRMPGLAKKVCFEITETAAIANFNQAKSFIVAMRALGCSFALDDFGK 688

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P D +K +G  +          A++  I  +A  I    IA+       
Sbjct: 689 GMSSLSYLKQLPVDYLKIDGDFVRDLLSDPIDRAMVEHINQIAHMIGMKTIAEYAENHEI 748

Query: 924 IKELTRMGCDYIQDSHVASPLGF--NSILK 951
           I+ L  +G DY Q   +  P       + +
Sbjct: 749 IQVLREIGVDYAQGYGIDRPHPIHNEDLAR 778


>gi|126452559|ref|YP_001065439.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|134281056|ref|ZP_01767765.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|167718680|ref|ZP_02401916.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei DM98]
 gi|167737694|ref|ZP_02410468.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
 gi|167821655|ref|ZP_02453335.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 91]
 gi|167823299|ref|ZP_02454770.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 9]
 gi|167910079|ref|ZP_02497170.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 112]
 gi|226194367|ref|ZP_03789965.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811449|ref|YP_002895900.1| diguanylate cyclase/phosphodiesterase [Burkholderia pseudomallei
           MSHR346]
 gi|242317424|ref|ZP_04816440.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|254181306|ref|ZP_04887903.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|254190675|ref|ZP_04897182.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202487|ref|ZP_04908850.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|126226201|gb|ABN89741.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|134247362|gb|EBA47447.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|147746734|gb|EDK53811.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|157938350|gb|EDO94020.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|184211844|gb|EDU08887.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|225933452|gb|EEH29441.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|237504493|gb|ACQ96811.1| diguanylate cyclase/phosphodiesterase [Burkholderia pseudomallei
           MSHR346]
 gi|242140663|gb|EES27065.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 772

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|332529736|ref|ZP_08405690.1| putative signaling protein [Hylemonella gracilis ATCC 19624]
 gi|332040757|gb|EGI77129.1| putative signaling protein [Hylemonella gracilis ATCC 19624]
          Length = 740

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/571 (21%), Positives = 212/571 (37%), Gaps = 13/571 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +    L                      S   V  ++     +      A + G      
Sbjct: 158 MAADRLELRRIEMSAEQAKGSFEEYAQRSPTAVVWFNEDGVVLAWNDAAAALHGYRVDEG 217

Query: 446 HGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            G      +   H          + +        +         D     + +       
Sbjct: 218 SGRPFETLVRAEHRASLHALIARVAAAGSVDGLSVPEGIHGVRKDGSEFPLGLSFFC-WR 276

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            NG ++      +D++  ++  +     +  D LTG+  R     R    L       + 
Sbjct: 277 ENGHLM-LNAHLHDMSGTRRQGDERGDTSHTDALTGLATRAQLYRRTEDTLAR-----DG 330

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  V+++D+   K IND LG  VGD VL    RR+  +      +AR+ G+ F ++L   
Sbjct: 331 KAAVLMMDLGGLKDINDTLGHEVGDAVLRETARRLEHIAPPEATVARIGGDEFALLLPGV 390

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +    +  A      I  P+ L    + V AS G A        + E++ +A+LA++ A
Sbjct: 391 TDPGTASVCARKAIARITEPVLLHGHHVRVGASCGLALAPMHAQEALELIGDADLALFQA 450

Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F          R +   +L  AV+  E  L Y P IRL D  +VG EALI
Sbjct: 451 KRHGRGQTFVFVQALRMEAMARRLYAIELHRAVDEGEFVLYYQPQIRLSDGALVGAEALI 510

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S + F+       +   +  ++L+        WR     P   I IN+  
Sbjct: 511 RWRHPQRGLLSPAAFLPALAGGPLAAVVGFWVLDEACAQAALWRRS-GAPDFRIGINLFG 569

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                ++L   +   + +    P  ++L  +E +V+ + E     L RLR +G+ +  DD
Sbjct: 570 AQFRVDDLVTQVTQALRRHGLPPEALELEVTEDIVLDHDELVLDTLQRLRALGVGIAFDD 629

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  + LS L   P   +K + S + G   +E+  +++R+I+ MA+      IA+ I  
Sbjct: 630 FGTGYASLSLLKSYPLSRIKIDRSFVQGLVDSERDASVVRAILDMARGFGLDTIAEGIET 689

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               + L   GC+  Q      P+       
Sbjct: 690 AAQHRRLKDSGCEEGQGYLFGRPVAAQDFAA 720


>gi|167844851|ref|ZP_02470359.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei B7210]
 gi|254195123|ref|ZP_04901552.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254298414|ref|ZP_04965866.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|157808300|gb|EDO85470.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|169651871|gb|EDS84564.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
          Length = 772

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +    P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFGEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|302873127|ref|YP_003841760.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|307688711|ref|ZP_07631157.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|302575984|gb|ADL49996.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
          Length = 890

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 221/439 (50%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  KS   +   A+ D LT +PNR  F   L   L ++  ++N+   V+ ID++++KKIN
Sbjct: 450 ELLKSEVKLHKLAYYDTLTNLPNRHMFKMYLEEKLQMARKNNNI-IGVIFIDLNQFKKIN 508

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G + GDD+L   ++R   +      + RL G+ F  ++I+E    ++  F   + K 
Sbjct: 509 DTMGHSAGDDLLAIFSKRFISIKSDNTEVFRLGGDEFVFVVIAE-EENQVKLFGEEIAKI 567

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P+ LL   ++VT SIG + +         ++K A+LAMY +K  GG ++E F     
Sbjct: 568 FIKPVELLGAILSVTGSIGISMYPKDGQDLDTLVKYADLAMYRSKEMGGCNIEYFNKEIH 627

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R     ++++  +  A+E++E  L Y P I      I   EALI+W H   G +S  +F+
Sbjct: 628 RDFEENMILETGIRKALEDNEFELYYQPKINAQTGAITSCEALIRWKHLDLGYVSPMKFI 687

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I+ +++    R  + W+       I + +N+++K   + +L + ++  +
Sbjct: 688 TVAEKSGLIFQIDKWVINEACRQNVQWQ-LEGRKKIPVSVNVSAKHFFEGQLVDVVKEAL 746

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  +++  +E V++ + +    ++ RL  +G+ ++LDDFGT  S  S+L  +P 
Sbjct: 747 KNNGIEPKYLRVEITEGVLIKDKQFVADIIKRLAGLGVLVSLDDFGTGYSSFSHLFQLPI 806

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   + G    EK+ A+++ +I  A N+E  ++A+ I    + K L  + CD +Q
Sbjct: 807 SELKLDREFIQGIDKYEKKGAMVKIMIEFAHNLELNVVAEGIETLEEYKFLQEIKCDELQ 866

Query: 937 DSHVASPLGFNSILKLLKE 955
               + P+       L+  
Sbjct: 867 GYLFSKPVKNEEFKDLISA 885


>gi|121997172|ref|YP_001001959.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Halorhodospira halophila SL1]
 gi|121588577|gb|ABM61157.1| diguanylate cyclase/phosphodiesterase [Halorhodospira halophila
           SL1]
          Length = 677

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/568 (22%), Positives = 262/568 (46%), Gaps = 17/568 (2%)

Query: 388 QHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + +LA   ++    ++ ER      +    D +   D     +     +    G      
Sbjct: 118 KALLAIEDWTAVRAAEEERGFLLELLDALPDYIGIADTRGGMLYHNRALYEAQG------ 171

Query: 446 HGPIRNWLPYIH-INDRDNFRTILDSFV--GYRRGRLQYEFRVRAADNQ-FHWMIIRIRP 501
            G   ++L  +   +D ++F+ + +  V    + G  + E R+     +    +   +  
Sbjct: 172 QGGSGSFLERLAGAHDPESFQRLQNEAVPNAEQTGIWRGETRLHHRGMEAEVPVEQFLIA 231

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             + +G ++RY  +  D++++      I    ++D +TG+PNR  F DR+     L    
Sbjct: 232 HRDEHGAVVRYSTLMRDLSQRYHHESEIERLLYRDPITGLPNRMLFHDRIEQAHAL-QEG 290

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 V+V DI ++  IN+ LG  +GD++L ++ R++ ELL     + R+ G++FG++L
Sbjct: 291 SADWLAVIVCDIKEFSAINESLGQDLGDEILAAVGRKLRELLPQAATIGRMGGDQFGVLL 350

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               ++ +   +A  +   +  P+ L +R I ++   G +    S  ++  +++ A+ A 
Sbjct: 351 PWLADAQEAMGYAERIVDKVGNPLALSDRSIHLSLRAGISVTRHSGESAGVLVEQADAAR 410

Query: 682 YHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             +K         S  ++    ++V +  +L  A+++  L + Y P + L   E +G EA
Sbjct: 411 QQSKRTASRCQFFSRELTEQAREQVYLTTELRRALDSGGLAVHYQPQVDLRSGEWLGYEA 470

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HPK G IS   F+  AE   MI  +   +LE+  R    WRD+  + P ++ +NI
Sbjct: 471 LVRWHHPKDGWISPGRFIPAAERAGMIHHVGEQVLEQAGRQFRQWRDE-GVAPEWLAVNI 529

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A+  +      E + A +++   +P  ++L  +E +++         L  LR+ G+ + +
Sbjct: 530 AAPQMETPGWGEQLLAFLNRFGLAPEDLELEITERLLVERRTEVATELAYLRRHGVRVAV 589

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P D +K + + +       +++A++ +I+ + + +   ++A+ +
Sbjct: 590 DDFGTGYSSLNYLTELPVDRIKIDRAFIADLTEDPRKVAVVEAIVTLGQRLGIAVLAEGV 649

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGF 946
             E   + L  +GC   Q    A P   
Sbjct: 650 ETEAQRQVLLDVGCRQGQGFLFARPAPA 677


>gi|167908702|ref|ZP_02495907.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 772

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|29142052|ref|NP_805394.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213424416|ref|ZP_03357229.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|29137681|gb|AAO69243.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 660

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F +++    +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|149189662|ref|ZP_01867944.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Vibrio shilonii AK1]
 gi|148836474|gb|EDL53429.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Vibrio shilonii AK1]
          Length = 947

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 223/436 (51%), Gaps = 3/436 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + S + +   AF D LT +PNR+ F+++    L L+  + ++   V+ +D++++K +N
Sbjct: 502 ELEASRDQLKRYAFNDALTNLPNRRMFIEQTNHALRLAERNRSI-AAVLFLDLNRFKHVN 560

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +++R+   L+  D+LAR  G+ F I++ +  N  +    +  +   
Sbjct: 561 DSLGHDFGDKLLVEVSKRLSGCLRSSDVLARFGGDEFTILIENLTNIEQAIALSKKIING 620

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  PI +    +T++ SIG A++        ++L+ A+ AMY AK    G    +  +  
Sbjct: 621 LRKPIQIGRESLTISTSIGIAAYPKDGQNVDDLLRAADTAMYKAKESSVGYFCYANTLRK 680

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               ++ I+ +L  A+E  +  L Y PII L   + +G E L++W+HP +G IS   F+ 
Sbjct: 681 QAQHKLFIESELPRALEKGQFELYYQPIIELRSGKHLGCECLLRWNHPTYGVISPDSFIP 740

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE    I  I  +++E+  + I  W+DQ        +  ++   L+  +L + +   + 
Sbjct: 741 IAEVSGEIIPIGAWVIEQACKQIRVWQDQNIYHKKVSVN-VSVVQLVSGQLIDDVMDPLQ 799

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  ++L  +ESV++ N  ++   +  L+KIG+++ +DD+GT  S LSYL  +P D
Sbjct: 800 RYGISPEALELEITESVLVQNMGQAIRFITELKKIGVNIAIDDYGTGYSSLSYLKQLPVD 859

Query: 880 TVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           ++K +   +     + + I+ S + MA  +   +IA+ I     +K L    C + Q   
Sbjct: 860 SLKIDRIFIDQLHPEDMTIVSSTLQMANELGINVIAEGIQTAEQMKILIDHDCQWGQGFL 919

Query: 940 VASPLGFNSILKLLKE 955
            + PL  +S     + 
Sbjct: 920 FSKPLPQSSYTAFCQN 935


>gi|327482330|gb|AEA85640.1| intracellular signaling protein with diguanylate cyclase and
           phosphodiesterase activities [Pseudomonas stutzeri DSM
           4166]
          Length = 796

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 137/600 (22%), Positives = 254/600 (42%), Gaps = 26/600 (4%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           +   D     L  G    +  +  T+ Q +         +    +     V  +   +  
Sbjct: 209 QFAIDQQPQNLSVGGRDEIGRLARTLNQMMNQLHERQLALSESEQLFRDLVDTAPIGMLV 268

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +   P  A + G     + G +         +DR          +        
Sbjct: 269 VDRELRVLQANPAAAALFGCTPAELLGNL--------PSDRLLESDATTRLLSTPANT-P 319

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E   R  D +   + I   P       +  ++ +  DI+++ ++ + +   A  D LT 
Sbjct: 320 LELTGRRHD-REVPLEISCTPFQRYG--VRHFLVLLRDISDRLRAEQRLRFLAHFDPLTQ 376

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR   + RL  +L        L        +D +K+IND LG  +GD +LV +  R+G
Sbjct: 377 LANRNYLVQRLEQLLAARLPLTLLYLD-----LDHFKRINDSLGHEIGDKLLVQIGDRLG 431

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            L+    +L+R  G+ F ++L   ++  +    A  + +    P+ + + E  V+ SIG 
Sbjct: 432 RLMPEHALLSRSGGDEFMLLLDG-SDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGV 490

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS 718
           A  +  + ++S++LK  +LA+Y AK  G N    +    S   + R  +++ L  A++  
Sbjct: 491 A-ISDGRHSASDLLKQVDLALYAAKDAGRNCTVFYNEALSDAAAGRRALEQALRRALDRD 549

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  L Y   +     E   +EAL++W+ P+ G +   EF+ + EE  MI     +++   
Sbjct: 550 EFVLHYQAQVNAQ-GEPEVMEALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREA 608

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R    W    +  P+ I IN++  D    +L   + A++++   SP  ++L  +ES ++
Sbjct: 609 CRQACRWHAIGH--PLRIAINLSPLDFRQADLAGSLLAILAEEGASPDMLELEITESALL 666

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
              E  +  L RL+  G+ L LDDFGT  + L+YL    FD +K +   ++G   +E+ +
Sbjct: 667 EADEHVQQTLSRLKAAGLPLLLDDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSV 726

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A++R I+ MA ++   ++A+ +  E     L   GC  +Q  H A P         L  R
Sbjct: 727 ALVRGILTMASHLGLHVVAEGVENERQAAFLRLNGCPSLQGFHYARPQPAAQCRLQLNGR 786


>gi|86747644|ref|YP_484140.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570672|gb|ABD05229.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 579

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 139/592 (23%), Positives = 243/592 (41%), Gaps = 44/592 (7%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G V  +  IG  + +        +       E    A       +         +   
Sbjct: 10  GMGSVHSITHIGTALAETSRRRPLRAVPPKQAAELAMSAFAAIDSALAMIAPDGRIMMAN 69

Query: 432 PDIATILG-LASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           P    + G ++S  +   +   +W         +                      V   
Sbjct: 70  PAFGRLFGDISSEDLQARLLIESWRNL---EGGERV--------------------VLFP 106

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D +   +   I P          Y   A+DIT+Q             D LT + NR+   
Sbjct: 107 DGRSFLIRTNILP--------SGYFVCASDITDQLARDARDARLVRTDRLTELGNRRLLR 158

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +RL  +LD S         ++ +D+D+++ +ND LG  +GD +L  +++RI   +   DI
Sbjct: 159 ERLQDLLDSSPAVRG-DCALLTVDLDRFRAVNDALGRNIGDALLCLVSKRIRSAVSDVDI 217

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + RL G++FGII             A  +   ++ P  L  + I VTA +G A       
Sbjct: 218 VTRLYGDQFGIIQFGRAQPDSAVILAKRLCDLLSRPYMLEGQLIDVTARVGIAPLALEAA 277

Query: 669 TSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
              +++KNA+LA+  A+     G  V    +      R  ++ DL  A+   E  LVY P
Sbjct: 278 DVDQVMKNADLALNRARQDRATGYCVFESGMDETVKARRALETDLRRALALREFALVYQP 337

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
              L    + G EAL++W+ P  G +S  +F+ +AEE  +I  I  ++L    RD  +W 
Sbjct: 338 QFDLQTRRVTGFEALLRWNSPTRGTVSPLDFIPLAEETGIINPIGEWVLRTACRDAANWP 397

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  I + +NI++       L   + + +S +   P R++L  +ESV++     +  
Sbjct: 398 A-----DITVAVNISAVQFAHRTLATTVLSALSDSDLDPRRLELEITESVMLDARGTALG 452

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           +L RLR  GI ++LDDFGT  S L YL   PFD +K + S + G+       AI+R+I  
Sbjct: 453 VLQRLRGTGIRVSLDDFGTGYSSLGYLRSFPFDKIKIDQSFVRGTAEDPGNRAIVRAIAS 512

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +N+    +A+ +     ++ +   GC ++Q   ++ P+    +   L  +
Sbjct: 513 LGQNLGMATVAEGVETAEHLERVAADGCTHVQGYLISRPISPEQVDGFLAAK 564


>gi|307609922|emb|CBW99448.1| hypothetical protein LPW_12231 [Legionella pneumophila 130b]
          Length = 768

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 218/433 (50%), Gaps = 6/433 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K   E +   A  D LT + NR+ F D L   +  +  + N    +++ID+D +K IND
Sbjct: 313 LKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRN-NSSLALLLIDLDNFKAIND 371

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD++L     R+  L++  D+L+R+ G+ F +I ++  +       A  +   +
Sbjct: 372 TFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNEL 431

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  + ITVT SIG + +     T+ ++L+ A+LAMY AK+ G N  + +      
Sbjct: 432 NSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGY 491

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S      ++  L  A++N E  L Y P   L++ EI+G E L++W++   G +S +EF+ 
Sbjct: 492 SQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  ++ ++L++    I+ W  Q N   +   INI+   L + +  + ++ ++ 
Sbjct: 552 VAENTGLITELSQWVLQKSCIQIMHWASQYNKM-LSFSINISPVQLTNPQFPKILEKILQ 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  Y    ++L  +E+ +MG+ +    +L  +  +GI L+LDDFG + S L+ L  +P D
Sbjct: 611 EYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSSLNRLKTLPID 670

Query: 880 TVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K + + ++    +   ++    II +A  +  +I+A+ I     +K L    C + Q 
Sbjct: 671 SLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQG 730

Query: 938 SHVASPLGFNSIL 950
             ++ PL  N   
Sbjct: 731 FLLSKPLTANEFT 743


>gi|87121506|ref|ZP_01077395.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86163349|gb|EAQ64625.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 878

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 135/562 (24%), Positives = 263/562 (46%), Gaps = 12/562 (2%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYI 456
           Q +       +     S D ++   +  + +   P  A   G      +   + N    +
Sbjct: 306 QSLREVRSDYTHLFDLSVDGIYRASLTGNLIKANPAYAKAFGYLDEDELCKNVNNIGEQL 365

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H + +D +   +   +  +R  + +E++      +  W+        + NG+   Y G  
Sbjct: 366 HNSSKD-YEDFISLLLKDKRV-IGFEWQSFDLKGKAIWLQENAYLTCHENGE-EYYEGFI 422

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +ITE+KK+   +   A  D+LTG+ NR +F+++++  +  ++   +    +  ID+DK+
Sbjct: 423 ANITEKKKAEIALKNQAQMDSLTGLLNRATFVEKMSDYIKKNSAHKS---AIFFIDLDKF 479

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G  VGD++L+  +RR+       ++++RL G+ F + L+   +  ++   A  
Sbjct: 480 KTVNDQYGHHVGDELLLEFSRRLKACFSENEVISRLGGDEFAVFLLGVTDLPQLNKLADK 539

Query: 637 MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +   +  P          ++ASIG +    +  ++SE LK A++AMY  K  G      F
Sbjct: 540 VVAGLRKPFAFSNGFNFKISASIGISMLDETVKSASEGLKQADMAMYEVKRNGRADFIIF 599

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 ++R    ++++L  A++  E+ + Y PI+     EI G+EAL++W +   GN+S
Sbjct: 600 NQGLNETERRRSLLEKNLLRALKLHEIKINYQPIVCFETGEIKGMEALMRWHNELLGNVS 659

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAE+  +I   + +++ ++  D+    + +    +F+ INI+ K LL +++C+ 
Sbjct: 660 PVEFIPIAEQTNLINPFSNWLIHQVCHDLKQLIEASGNTELFVSINISPKQLLSDQVCDN 719

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   +      P+ IKL  +E+ +    E     L R+R  GI++ +DDFGT  S L  L
Sbjct: 720 LLISLDVNDLKPNNIKLEITETAIYDQEESVVKQLRRIRSYGIAIYIDDFGTGYSSLERL 779

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +           IL++ + MA+ +   ++ + I           + 
Sbjct: 780 IQYPFDGLKIDRSFVKNLVPGNSQDVILKASVKMAEMLNLVVVVEGIESHFQFDFFKALD 839

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C+Y Q   +  PL    I KLL
Sbjct: 840 CEYAQGFLLFKPLCVTDIHKLL 861


>gi|83647298|ref|YP_435733.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83635341|gb|ABC31308.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 686

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 218/445 (48%), Gaps = 8/445 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++ +   I+  +  D+LTG+P R  F + +   +D S   +  +  V  + ID +K IN
Sbjct: 245 KRQAAEARIIKLSQYDSLTGLPTRSLFTNYIAAAVDDSEALNQ-KFAVFCVGIDDFKSIN 303

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG + GD +L +   R+         + RL G++F +IL + ++S ++A FA ++ + 
Sbjct: 304 EQLGYSQGDKLLQAFAERLLSQRDGVHTVCRLGGDQFALILFNVSSSYRVAAFAESLLRE 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ P  + E+   V+ +IG A +      + ++L+ AE  M  AK    NH + +  S  
Sbjct: 364 ISRPFEIEEQLTPVSCTIGIAIYPDDARDAEKILQKAEQTMMLAKSVANNHFQFYVASLD 423

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              R    +++DL  A++N EL+LVY P I L  +++VG EAL++W HP+ G +    F+
Sbjct: 424 SEIRERKKLEKDLSKAIQNDELFLVYQPQIDLNSKQVVGCEALLRWRHPERGLVPPDVFI 483

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE    I  I  ++L      +  WR+Q     I + IN+++  L   E    +  +I
Sbjct: 484 PIAEANETILEIGDWVLHEACAQVNQWRNQGFN--IKVAINLSANQLRQKEFAPHVLKII 541

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  S I+L  +E+  M N  ++   L  L + GI   +DDFGT  S LSYL  +P 
Sbjct: 542 ESRQIPTSLIELEVTETSFMENLNQAITSLRHLSEFGIQCAVDDFGTGYSSLSYLKQLPI 601

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +      E    I+ +II + K++   +IA+ +      + L   GC   Q
Sbjct: 602 RKIKIDKQFVRDLMKDEDDTQIVHAIIQLGKSLRLDVIAEGVETPRQERFLKHDGCTLAQ 661

Query: 937 DSHVASPLGFNSILKLLK-ERFPLV 960
             + + P+  + +++ +K    P  
Sbjct: 662 GYYYSKPVPPDELIEFMKVSHAPQT 686


>gi|54294112|ref|YP_126527.1| hypothetical protein lpl1176 [Legionella pneumophila str. Lens]
 gi|53753944|emb|CAH15415.1| hypothetical protein lpl1176 [Legionella pneumophila str. Lens]
          Length = 768

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 217/433 (50%), Gaps = 6/433 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K   E +   A  D LT + NR+ F D L   +  +  + N    +++ID+D +K IND
Sbjct: 313 LKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRN-NSSLALLLIDLDNFKAIND 371

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD++L     R+  L++  D+L+R+ G+ F +I ++  +       A  +   +
Sbjct: 372 TFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNEL 431

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  + ITVT SIG + +     T+ ++L+ A+LAMY AK+ G N  + +      
Sbjct: 432 NSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGY 491

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S      ++  L  A++N E  L Y P   L++ EI+G E L++W++   G +S +EF+ 
Sbjct: 492 SQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  ++ ++L++    I+ W  Q N   +   INI+   L + +  + ++  + 
Sbjct: 552 VAENTGLITELSQWVLQKSCIQIMHWASQYNKM-LSFSINISPVQLTNPQFPKILEKTLQ 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  Y    ++L  +E+ +MG+ +    +L  +  +GI L+LDDFG + S L+ L  +P D
Sbjct: 611 EYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSSLNRLKTLPID 670

Query: 880 TVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K + + ++    +   ++    II +A  +  +I+A+ I     +K L    C + Q 
Sbjct: 671 SLKIDKTFISDIHSEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQG 730

Query: 938 SHVASPLGFNSIL 950
             ++ PL  N   
Sbjct: 731 FLLSKPLTANEFT 743


>gi|213647977|ref|ZP_03378030.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 663

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F +++    +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|16765047|ref|NP_460662.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16420232|gb|AAL20621.1| putative PAS/PAC domain protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261246894|emb|CBG24711.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993641|gb|ACY88526.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158230|emb|CBW17729.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912693|dbj|BAJ36667.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|332988590|gb|AEF07573.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 660

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|307729040|ref|YP_003906264.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307583575|gb|ADN56973.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 795

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 210/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L   +   A        ++ ID+D +K +ND LG 
Sbjct: 341 EREMTHLVEYDLLTGLRNRYATLRTLRQEVAHPANLG--HLAILFIDLDNFKTVNDTLGH 398

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  ++   +    A A  ++ + P 
Sbjct: 399 NAGDIVLQMTASRLATAVADGGTLSRIGGDEFVVVIKGDDVEKRAVALAEAAAEAFSKPF 458

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +          
Sbjct: 459 EVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPQLSHRADH 518

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 519 LMKWEQQLRVALAEGQLFLAYQPKIDLTRRCITGFEALVRWNHPQHGLIPANEFIPVAES 578

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 579 TGLIVPIGDFVIETACRQLAIWQQQGYDT-LSLAVNISAVQFWRGDLYETVSHAIEESGI 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 638 SARRLELEITETAMMEYPELVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 697

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 698 DRSFVQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 757

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  LL+ 
Sbjct: 758 RPVPVDAIPALLER 771


>gi|222086596|ref|YP_002545130.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221724044|gb|ACM27200.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 788

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 143/632 (22%), Positives = 257/632 (40%), Gaps = 30/632 (4%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           ++  +    I      +    RL + I     +G    +       + +   +       
Sbjct: 156 VLTVFGAALIGNRIFVIQPLMRLTHAIEATRQLGSRHHVDWQSNDEMGRLAHSFNEMQSK 215

Query: 400 IFSDGERQSLAVLGSGD-------IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           +  +     LA   + D       +++  D        +       G A  ++ G  R +
Sbjct: 216 LEREETELKLAHRRATDTYNLTPAMLFSLDKDDCIAAVSDYWLAATGYARANVVG--RKF 273

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII-RIRPMSNSNGDILR 511
              +    R  +     S       R     +    D +   ++I     + +       
Sbjct: 274 ASLVLPESRAKYIERKRSHPD-SAARFDVTVKFHCRDERVMDVLILETTAIQDG-----L 327

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+T+ K+S +  L  A  D+LTG+ NRQ F   L   ++ +          + I
Sbjct: 328 SLSVMTDVTDLKQSEDRNLRQAITDHLTGLLNRQGFETALDAKINEADKRKR-ELACLFI 386

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K IND  G A GD  L  L  R+   L+  DI ARL G+ F I+L++E+   +  
Sbjct: 387 DLDRFKWINDNKGHAAGDAALRELVARLQARLEPGDIAARLGGDEFAILLLAEDAEARAI 446

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D A  +      P      +  ++ASIG A +      ++E+L  +++AMY  KH G N 
Sbjct: 447 DMATRIADVFEAPF---GGDARLSASIGIAIYPRHAANAAELLLKSDIAMYAKKHDGKNG 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + F      + R    ++  +   +          PI+ + D  I G EAL++  HP+ 
Sbjct: 504 AQIFDNGMLDASRRRAELENHIENGLSEDWFEAHLQPIVNIDDRSIAGFEALMRLHHPQK 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  +  + +AEE   I  I   ++E+   +         M   ++ IN +       E
Sbjct: 564 GILPPARIIEVAEETGSIIRIGNRIMEKAVSNFARLSRLDGMQDTYLAINFSPLQFE-PE 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   + AL+S+   SP RI +  +E+V+M +   +R+++  + + G  + LDDFGT  S 
Sbjct: 623 LPVRIAALLSRHDISPKRIVVEITEAVLMDDNPETRMVINEICRYGCRIALDDFGTGYSS 682

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE-------KRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           LSY+   P D +K + S +    +       K   ++ SI  ++  +  T+IA+ I  E 
Sbjct: 683 LSYINRFPVDIIKIDQSFIRAINDTASDVSAKSRMLVESITTLSHKMNCTVIAEGIETEE 742

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +   L  MG DY Q      P   N ++K L 
Sbjct: 743 ECTTLRTMGLDYGQGYLFHRPQHPNDLMKTLA 774


>gi|167893384|ref|ZP_02480786.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 7894]
          Length = 772

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 123/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +    P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFGEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|51893986|ref|YP_076677.1| hypothetical protein STH2848 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857675|dbj|BAD41833.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 712

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 132/679 (19%), Positives = 248/679 (36%), Gaps = 29/679 (4%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
             ++             L   +  Y           L  +V    +      +      +
Sbjct: 17  ARRLTRAAAGAQLLQGALILFAPAYAAALLQGFAEPLRVVVGLSFFLSSALLLWLERPTL 76

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            +    IL+ +  +   +     +       AL  G + + +L          A G    
Sbjct: 77  SVFQRRILVAVASLPAALCTAMAVWVRWWLGALFFGGINLSLLA---------ARGILQP 127

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                 +     V  +   +   D  +  V        I G     + G     L     
Sbjct: 128 AKQPSAQWLQAVVAMAPSALIATDREQRIVLFNRRSEEIFGYTKQEVLGKPIRALLPELP 187

Query: 459 NDRDNFRTILDSFVGYRRGRLQ--------YEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                    L+       G           +E      D     + + +        ++ 
Sbjct: 188 GPAPGEGKGLNGAGPGANGLRSGGHPATQGHELVAHHKDGSSFPVEVSVAVTRAGADELR 247

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +    +I+ +++    +   A QD LTG+ NR++F   L   L+L+     +R  ++ 
Sbjct: 248 --VLEVRNISGRRRVQAALKRLASQDALTGLYNRRAFQAELERYLELA-RHHRVRGALLF 304

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D  K +ND LG   GD VLV +   I   L+  DI AR  G+ F  IL+       +
Sbjct: 305 MDLDLLKYVNDTLGHQAGDQVLVRVAEIIQAHLRPIDIAARHGGDEFA-ILMPYTGREAV 363

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +     +R        +  R +T+TASIG   +    +T+  ++  A++AMY AK  G N
Sbjct: 364 SVAESLLRAVQQEEFRVKGRSVTMTASIGVTFFPDHGLTAEALVAQADMAMYRAKESGRN 423

Query: 691 HVESFR----VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            V  F            ++     L  A+      L   PI+ L    I  +E L++   
Sbjct: 424 AVAVFDGTDEQRIEMVAKLSWDRRLREALREDRFVLYAQPILDLRLGRITRVELLLRLVD 483

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I+   F+  AE   +I+ I+ ++L    R I      + +      +N++ K + 
Sbjct: 484 EGGNVIAPGAFLAGAERFGLIQEIDRWVLREAIRLIAQQEPDSEIEAFE--VNLSGKTIS 541

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L   +Q  +  +   PS++ L  +E+  +G+ E++R  +  +R++G    LDD G+ 
Sbjct: 542 DPGLARMIQEELEASGADPSKLVLEITETAAIGDLEQARRFITAMRRLGCRFALDDVGSG 601

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L  L  +P D +K +G+ +     +     ++R+++ MA+      IA+ +     +
Sbjct: 602 FSSLRLLKQLPVDYLKIDGAFIRNLPTEDADKHLVRAMVAMARTQGQQTIAEFVDRAETL 661

Query: 925 KELTRMGCDYIQDSHVASP 943
           + +   G DY Q   V  P
Sbjct: 662 RLVREFGVDYAQGYLVGRP 680


>gi|110632952|ref|YP_673160.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Mesorhizobium sp. BNC1]
 gi|110283936|gb|ABG61995.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Chelativorans sp. BNC1]
          Length = 730

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 215/446 (48%), Gaps = 14/446 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
               S       A  D LT +PNR  F  +L  ++D      +    ++ +D+D++K +N
Sbjct: 292 ALHASERRARHLASHDVLTRLPNRAFFEKKLDRVIDTVQA-GHGEAALLFLDLDRFKNVN 350

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI-ILISENNSLKIADFAIAMRK 639
           D LG   GD+++     R+   +    ++AR+ G+ FG+ IL          + +  + +
Sbjct: 351 DTLGHRAGDELVRETAVRLSTAIGNAGVVARIGGDEFGMVILRRSGAREAAIELSERLLQ 410

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++ +P  +    + V  SIG A    +     ++L+ A++A+Y AK RG    + F  + 
Sbjct: 411 ALKVPFVISGEPVHVGVSIGVALAPEAGSERQDLLRKADIALYDAKKRGRGCYQIFSEAM 470

Query: 700 FRS--DRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 R  ++ DL  A+ N E L L Y P+      EI G EAL++W HP  G++S   
Sbjct: 471 GDILKQRRQVEADLRNALANGEELQLFYQPLYSDAS-EITGAEALLRWKHPVHGSMSPVF 529

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            + +AEE  MI  +  ++L    R  +         P+ + +N+++  L D    E   A
Sbjct: 530 LISVAEESGMIMQLGDWVLREACRMAVK-----ADIPL-MSVNVSAVQLRDEHFAERCLA 583

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I +   +P RI+L  +E+V++ NP+ +  +   LR+ GI + +DDFGT  S +SYL   
Sbjct: 584 IIRQENVAPERIQLEVTETVLIENPDLTVRIFETLREAGIRIAIDDFGTGYSSMSYLRNY 643

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +   +E +   AI+ +++ +A+ +E  ++A+ +      K L  +GC  
Sbjct: 644 PVDRLKIDRSFVQALSESKQGRAIVGAMLDIARALELDVVAEGVETVDQCKVLRSLGCRE 703

Query: 935 IQDSHVASPLGFNSILKLLKERFPLV 960
           +Q    + PL     L  LK   PL 
Sbjct: 704 MQGYLFSRPLEPLQFLHSLKRPVPLT 729


>gi|299529124|ref|ZP_07042572.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298722880|gb|EFI63789.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 708

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 218/442 (49%), Gaps = 11/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR----PTVMVIDIDKY 576
           + + +   +   AF D LT +PNR  F DRL   L      +  R      ++ +D+D +
Sbjct: 250 KLQLANTELRQRAFADPLTNLPNRLLFEDRLIHALLRLERANRSRTKERLGILFVDLDGF 309

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD +LVS   R+    +  D +AR+ G+ F ++L    +       A  
Sbjct: 310 KPINDSFGHAAGDQILVSAAERLMAEARSSDTVARVGGDEFLVLLEDTQDVAACMAVANR 369

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K+++ P  L  +E+ +T SIG  ++         ++ NA+ AMY AK  GGN    F 
Sbjct: 370 ILKALSQPFRLGNKELQITCSIGIVAFPDHG-DRDHLIANADAAMYAAKRNGGNGFAVFE 428

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  S+++ ++ DL  A++  ++ L Y P I      I+G+EAL++W HP+ G I+ 
Sbjct: 429 PHMGSDASEQLELQNDLRHAIQRGQMELHYQPKIDSERGNIIGVEALLRWAHPERGMIAP 488

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I ++  +++E   R +  WRD      + + IN++   L ++ L + +
Sbjct: 489 DIFIPLAERFGIINSLGNWVIEEACRQLALWRDMGLQ--MRVAINLSVHQLRESGLADRI 546

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +     S++    +ESV M + + ++  +  LR IGI L++DDFGT  S L+YL 
Sbjct: 547 TQTLLRHDVQASQLLCEITESVAMEDTQATQRAIEELRDIGIFLSIDDFGTGYSSLNYLR 606

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +      E   A++ +++ +A  +   ++A+ +        L  M C
Sbjct: 607 QLPAQQLKIDRSFIRDLETEEDARAVVHAVVRLAHALGLRVVAEGVETAGQRDILIDMQC 666

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
           D +Q    A P+  +S+L   +
Sbjct: 667 DELQGYFYARPMPADSLLAWAR 688


>gi|167580272|ref|ZP_02373146.1| EAL/GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/434 (29%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVTNEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WRD+ +   + + +NI+       +L + +   + +T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRDEGHD-KLTLAVNISPVQFWRGDLIDTISRALVETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIPALLAR 745


>gi|331646613|ref|ZP_08347716.1| protein gmr [Escherichia coli M605]
 gi|330911155|gb|EGH39665.1| hypothetical protein ECAA86_01494 [Escherichia coli AA86]
 gi|331045365|gb|EGI17492.1| protein gmr [Escherichia coli M605]
          Length = 661

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +    +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQVLIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|238895576|ref|YP_002920311.1| hypothetical protein KP1_3659 [Klebsiella pneumoniae NTUH-K2044]
 gi|238547893|dbj|BAH64244.1| hypothetical protein KP1_3659 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 636

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/425 (30%), Positives = 213/425 (50%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 219 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGC-AVVMLFDLDSFKDVNDTLGH 277

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  + L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 278 DAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALER-ANVIREKISQPY 336

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 337 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 395

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 396 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 455

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I A+  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 456 IGLINALGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIEVLHQTGL 510

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR+ GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 511 DPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRLSYFPFDKIKI 570

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 571 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIG 630

Query: 942 SPLGF 946
            P   
Sbjct: 631 KPSPL 635


>gi|126441543|ref|YP_001058200.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 668]
 gi|126221036|gb|ABN84542.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 668]
          Length = 772

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIAALLAR 745


>gi|21231313|ref|NP_637230.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768635|ref|YP_243397.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112969|gb|AAM41154.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573967|gb|AAY49377.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 726

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 223/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 288 EREQIRQRVHQLAFYDALTGLPNRIMFSARAEQALTHA-EYAGEPAALMFINIDRFKLIN 346

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RIGE L    +LARL+G+ F + L    ++ + +  A  +  +
Sbjct: 347 DSQGHAAGDGLLRDIALRIGEQLTATAMLARLAGDEFALALPQC-SAEQASATAERLLGT 405

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +AS+G A +       + +L++A+LAM  AK  GG     F     
Sbjct: 406 IAGPLPVGHMTVHPSASVGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSADMN 465

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPII-RLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+  ++L L Y P +       + G+EAL++W+HP+ G +S + F
Sbjct: 466 RMAQERVALEAELRQAIGRNQLQLHYQPQLLSQAPHALYGVEALLRWNHPQLGAVSPARF 525

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R    +  WR Q  +P   + +N+++       +   +  L
Sbjct: 526 LPVAEEQGMMPQLNDWVLRRACEQVADWR-QRGVPVARVSVNLSASSFESPRMLTDLLRL 584

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I      PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 585 IDDMGVQPSDLTLEMTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 644

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 645 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLLLADLGCEVL 704

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 705 QGYLFSRPLPAAALEAWLGAQ 725



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 8/123 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN--DRDN 463
            + A+ GS   +   D+    +        + G     + G    + L     +  +   
Sbjct: 14  LAQALDGSSSAILICDLQSRLLYANDGFERMFGYTEAELVGQRPSHVLTRALSDQTEVAR 73

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R   D+    +   L     V   D    W+ +   P+ ++  +   Y+ +  DITE K
Sbjct: 74  IRERADALQQTQADLL-----VYRKDGTPLWISLNFNPIYDAQHNPSHYVAVLTDITETK 128

Query: 524 KSL 526
              
Sbjct: 129 MHE 131


>gi|212637471|ref|YP_002313996.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212558955|gb|ACJ31409.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 705

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/549 (21%), Positives = 233/549 (42%), Gaps = 10/549 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S+ +  S + V+  +     +     +  I G ++  M       L          
Sbjct: 155 KELMSITLEDSAEAVYITNEDHRILAVNKAMCRICGYSAEHMLVKTPKELGL-----EAM 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L++     +G  Q E     +D          R +   N   + ++ + +DI+E+K
Sbjct: 210 LNDTLNANPLKEKGNWQGEVWKYRSDGSKFPAWQSCRRIYADN--TVYFVNLFSDISEKK 267

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PNR   +  L   ++      ++   +M +D++ +K IND  
Sbjct: 268 RLEAKLTQQAMYDKLTGLPNRFHLIKILNKAIEDIKQHSSMIGALMFLDLNGFKNINDSF 327

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL  +  R+         +ARL G+ F ++L    N  +I  F+  +      
Sbjct: 328 GHATGDKVLQLVAARLETCCLEDAEIARLGGDEFTLVLPKCKNKQEIEAFSDLVLSLFDA 387

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRS 702
           P  +  ++  ++ SIG + +      ++++L  A+ AMY AK         +  +     
Sbjct: 388 PFEIDGQKFYLSTSIGISLFPQQSHEANQLLSMADTAMYSAKKSPNHIRFYNAAIREAAE 447

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ I  DL  A    +  LVY  I+ L   E++ +EAL++W       + +SEF+ + E
Sbjct: 448 KKLHILNDLRHAQSLRQFSLVYQQIVDLESNEVIAVEALLRWQRSNGDILEASEFIPLLE 507

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   +  + L+ LE+    +  W  Q N   + I +NI++  L   +    +  ++ +T 
Sbjct: 508 ETGSMVNVGLWALEQACTQMAQWHTQYNNT-LKITVNISTSQLEHPDFVSMLTKVLQQTQ 566

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++ +   ES ++  P     +L  L+++ I + +DDFG   S LS LG +P D +K
Sbjct: 567 LPSDKLIIEIEESALIRKPAMMSAVLSELKQLNIGIAIDDFGAGLSSLSRLGSLPIDCLK 626

Query: 883 FNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S        +   + ++++ +A+ +    IA+ +  +   + L +MG  Y Q  H  
Sbjct: 627 IDSSFAQRLHEPQGKELCKAMVQLAQTLNICYIAEGVETKEQKELLAKMGNGYGQGYHFG 686

Query: 942 SPLGFNSIL 950
            P   +   
Sbjct: 687 WPATADVFA 695


>gi|197265009|ref|ZP_03165083.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205358003|ref|ZP_03223901.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197243264|gb|EDY25884.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205328272|gb|EDZ15036.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|321224330|gb|EFX49393.1| hypothetical protein SEE_02786 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323129972|gb|ADX17402.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 663

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|195873266|ref|ZP_03080052.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195634533|gb|EDX52885.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 663

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 248/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  +++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPKMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|21108096|gb|AAM36749.1| c-di-GMP phosphodiesterase A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 754

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 224/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 316 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 374

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 375 DSQGHAAGDGLLRDIALRVNDQVAATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 433

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 434 IASPLPVGHMTVHSSASIGVAMFPEDGQDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 493

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A++  +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 494 RMAQERVALEAELRQAIDRDQLQLHYQPQMHSAAPHTLYGVEALLRWNHPQLGAVSPARF 553

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 554 LPVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLRL 612

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++T   PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 613 IAETGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 672

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 673 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 732

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 733 QGYLFSRPLPAPALEAWLDAQ 753



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q         + A+ GS   +   D+    +        + G     + G    + L
Sbjct: 30  AGEQPEQRRSRLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVL 89

Query: 454 PYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    R   D+    R   L     V   D    W+ +   P+ ++N     
Sbjct: 90  TRAQSDQSEVARVRDRADALQHTRADLL-----VYRKDGTPLWISLNFNPIYDANHAPSH 144

Query: 512 YIGIANDITEQKKSL 526
           Y+ +  DIT+ K   
Sbjct: 145 YVAVLTDITDTKMHE 159


>gi|83719449|ref|YP_441502.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83653274|gb|ABC37337.1| EAL/GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 786

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/434 (29%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 329 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 386

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 387 NAGDIVLQMTAARLSDAVTNEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 446

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 447 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 506

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 507 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 566

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WRD+ +   + + +NI+       +L + +   + +T  
Sbjct: 567 TGLIVPIGDFVIRTACEQLARWRDEGHD-KLTLAVNISPVQFWRGDLIDTISRALVETGI 625

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 626 EARRLELEITETAMMEYPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKV 685

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 686 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 745

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 746 RPVPSDGIPALLAR 759


>gi|149189784|ref|ZP_01868065.1| c-di-GMP phosphodiesterase A-related protein [Vibrio shilonii AK1]
 gi|148836433|gb|EDL53389.1| c-di-GMP phosphodiesterase A-related protein [Vibrio shilonii AK1]
          Length = 679

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/539 (23%), Positives = 245/539 (45%), Gaps = 27/539 (5%)

Query: 427 RVTTTPDIATILGL--ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            ++  P  A + G   ++  +   +   L      + +  +  L + V            
Sbjct: 152 ILSANPASARLFGYAKSTDLLGESLNRLLSN--EKNNNRVQLDLANIVNGTPLHFLTS-- 207

Query: 485 VRAADNQFHWMIIRIRPMSNSN---GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTG 540
                 ++     R+    +     G+    + +  D+ E+     +    +   D LT 
Sbjct: 208 ------EYCGTQRRLSLHVDDANLFGNSAHLV-LIQDMDEKPNPVAQNSNEDVNIDTLTK 260

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR  F   L   +      D     ++ +DID +K IND LG  +GD V+  ++ R+ 
Sbjct: 261 LYNRLGFTRCLDHFI-----QDKTPLVMLYLDIDNFKNINDSLGHHIGDRVIQEVSSRLK 315

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             L    +LA L G+ FGIIL    ++  +   A  +   I  P +L      +  SIG 
Sbjct: 316 RHLPQQSVLAHLGGDEFGIILPEPESNSTVEMLAEKIIGLINQPFDLHHFSKRLACSIGS 375

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENS 718
             + +    +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  A++ +
Sbjct: 376 VHYPNDGNDARILLQNADTAMYEAKARGRNRLVKFNDQMNKEARMRLWLEIELQKALQQN 435

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            L + Y P +   D  I G EAL++W HP  G IS + F+ +AE+  +I+++   ++  +
Sbjct: 436 GLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPASFIPVAEQAGLIESLGRVVMRDV 495

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  W     + P  + IN++ +   + +L + M+ L+  T   PS I    +ES VM
Sbjct: 496 FNTVKRW-KLQGILPGRVAINLSPEQFGNPKLIDYMERLLRSTGLDPSCITFELTESAVM 554

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896
            N E +  +L  ++K+G +L++DDFGT  S LSYL + P D +K + + +       K++
Sbjct: 555 SNSEHTLQMLDAIKKLGFALSIDDFGTGYSSLSYLAHFPIDELKIDRAFIMDIDTLPKQL 614

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++ +II + K++  +++A+ +        L+ + C+ IQ  H   P   + +  L  +
Sbjct: 615 TVIENIINLGKSLNLSVVAEGVETRHQATLLSNLNCNSIQGFHFHRPQPKHEVEALFAQ 673


>gi|308050936|ref|YP_003914502.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
 gi|307633126|gb|ADN77428.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
          Length = 775

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 211/445 (47%), Gaps = 9/445 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             ++ +++ S + +   A  D LTG+ NR +    L   ++ +   D  +  +M ID+D 
Sbjct: 319 HQEVAKRQASEQQLAYQASHDILTGLANRLAGQRALDEAIEQA-RSDGSQVLLMFIDLDN 377

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  +GD +LV   RR+   L     +AR  G+ F +I+ +          A 
Sbjct: 378 FKHINDTQGHHMGDQLLVHSGRRLSLALAEGCTVARFGGDEFLLIVPACAGREHATQRAR 437

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           ++ +    P ++      V+ SIG   +     ++ E+++ A+ A+Y AK RG N    +
Sbjct: 438 SILRLFDAPFHVEGETFYVSTSIGMTLFPDDGSSAKELIQRADAALYRAKERGRNDFSFY 497

Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     RV +   L +A+E + L + Y PI+ L    I+G EAL++W  P  G +S
Sbjct: 498 DAEINLEVQRRVQLDARLRVAIEQNTLEVHYQPILDLARSRIIGAEALVRWTDPLLGPVS 557

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCE 812
            +EF+ +AE   +I  +   +L         W+  A   P+ + +N++S      E L  
Sbjct: 558 PAEFIPLAERNGLIHRLAEQVLSTACAQASRWQAIA---PVTVAVNVSSAQFHHCEPLQH 614

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +++ +++T  +P R+ +  +ES+++GN +     L  L  +GI L +DDFGT  S LSY
Sbjct: 615 SIESALARTGLAPQRLVVEVTESLLLGNHKDLHSTLQGLVDMGIGLAIDDFGTGYSALSY 674

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PF  +K + S +    S     ++L +I+ MAK +   ++A+ I      + L   
Sbjct: 675 LQQFPFSELKIDRSFLKKLDSDSSDRSLLEAILAMAKALSLNVVAEGIESAEQARFLREH 734

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC   Q    +  +      +LL+ 
Sbjct: 735 GCQCGQGFLYSPAVPAAEFERLLRA 759


>gi|296114633|ref|ZP_06833286.1| cAMP phosphodiesterase [Gluconacetobacter hansenii ATCC 23769]
 gi|295978989|gb|EFG85714.1| cAMP phosphodiesterase [Gluconacetobacter hansenii ATCC 23769]
          Length = 869

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/511 (24%), Positives = 243/511 (47%), Gaps = 18/511 (3%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           WL       R+  R    + +  R GR+   F +        +   + +P S     +  
Sbjct: 367 WLTLRSAAMRNGIRAAWATPIVLRGGRVAGVFTL--------YFRTKRQPQSWCQKAVSA 418

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +     E+ ++ E I   +  D LTG+PNR      L  +L            ++ +
Sbjct: 419 SLHLCTQALERYEAKEHIAKLSHFDTLTGLPNRMWLRQHLDKMLRRPTR---GNFMLLSL 475

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            +D +K INDV G A GDD++  +  ++ + +   D + R  G++F II          +
Sbjct: 476 GLDNFKNINDVFGHAAGDDLISYIATQLRDAIGIDDTIVRSGGDQFTIITSGIQ--QHAS 533

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             +  + + ++ P+ + +  +T +ASIG + +  +      +LK+AE AM+ AK  GG +
Sbjct: 534 SLSDMVLRLLSQPMQVGDVSVTFSASIGISVYPENGEAGETLLKHAETAMFQAKAHGGAN 593

Query: 692 VESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F  +++   +DR+++   L  A+ +  L LVY P +     ++ G+EAL +W+ P  
Sbjct: 594 YCFFSPKMNQQATDRLILAAALRDAIAHDRLRLVYQPQVHARTGKMYGVEALSRWNDPTL 653

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS + F+ +AEE   I+AI  + +    R +  W       P  + +N++     D +
Sbjct: 654 GFISPARFIAVAEETGQIEAIGKWSMRAACRQMAEWIRDGIDVP-TVSVNLSPLHFRDEK 712

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  ++ +T   P+R+ +  +ES ++ N +R+      LR++G+ +++DDFGT  S 
Sbjct: 713 LPEFVAEVLEETGIPPARLMVEITESTMIDNYDRTIKAAQALRELGVGMSMDDFGTGFSS 772

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L  +P + VK + S M G        +++ ++I + +++  T++A+ +  E   + L
Sbjct: 773 LSNLAGLPVNEVKIDRSFMNGLETVDKVRSVVTAVIRIGQSLGMTVVAEGVEHEEQRQIL 832

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             M CD +Q    + PL  + ++  L    P
Sbjct: 833 VNMDCDVLQGYMFSKPLASDDLITWLAGYTP 863



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 6/161 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                      +  + +   +    +I+ +       + I       SL V  +   V  
Sbjct: 112 FDGTSFWAELSLSRISVSGKIGYMALIRDISQEVADREKIRL----LSLVVRETDRGVVI 167

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +        + G     + G   + +      D      +       +     
Sbjct: 168 LDPEFRLIYVNRAFTDMFGYEPSHVIGHGLSVILAGDTTDISTLNQLHAGAQNDKG--FT 225

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            + R R  + +  W+   + P+   +GDI   + +  DITE
Sbjct: 226 LDIRARHKNGRDIWVSATMNPVFEDHGDIENIVVVLTDITE 266



 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 15/132 (11%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   V   D              +       + G     +  +        R+  D
Sbjct: 33  ALEQTILGVVLIDETNTVTFFNSAAERLWNCTRADVLGRN---VNVLVP---RKIRSSHD 86

Query: 470 SFVGYRRGR-------LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             + + R            E +V   D    W  + +  + + +G I  Y+ +  DI+++
Sbjct: 87  DLIKHNRDTGINKIVGTSREVQVERFDGTSFWAELSLSRI-SVSGKI-GYMALIRDISQE 144

Query: 523 KKSLEGILCNAF 534
               E I   + 
Sbjct: 145 VADREKIRLLSL 156


>gi|205356975|ref|ZP_03223632.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205325110|gb|EDZ12949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 663

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|167631104|ref|YP_001681603.1| pas sensor diguanylate cyclase/phophodiesterase [Heliobacterium
           modesticaldum Ice1]
 gi|167593844|gb|ABZ85592.1| pas sensor diguanylate cyclase/phophodiesterase [Heliobacterium
           modesticaldum Ice1]
          Length = 576

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/578 (20%), Positives = 242/578 (41%), Gaps = 36/578 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT-------ILG 439
           +         S  +    E        + D ++   +        P  A        +LG
Sbjct: 1   MIEGKVNKGSSHLVQFAEEELRAIQESTFDAIFTCSLDGVLTGIWPGAARRNSHLDGLLG 60

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +              +H  D +  +  +         R   E R+R  D  + W  +  
Sbjct: 61  CSLN----------DVVHPEDLETVKAFISKVKRLGTVRPGPECRLRQLDGSWRWYSVNA 110

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +   +G+ L   G+A D++EQK++ + +   A  D LTGIPNR  F   L+    L+ 
Sbjct: 111 SLVCGVDGEPLYVAGVARDLSEQKETEKHLKHLATHDYLTGIPNRYYFDGALSRARRLAK 170

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             +    ++++ID+DK+  +ND+L   +GD +L +L+R +   ++  D+LARLSG+ FG+
Sbjct: 171 --EGTVSSLLLIDVDKFNLVNDLLDHDMGDRLLTNLSRLLKSQIRRDDVLARLSGDEFGL 228

Query: 620 ILISENNSLK---IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           +L     +       +    +++    P+ L   ++  T SIG A          ++L  
Sbjct: 229 LLHGMAEAEAEKVALNLCHIVKERDLCPV-LEGCDLRFTVSIGVAEINGH-QDVRQVLSR 286

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCLAVENSELYLVYHPIIRLMD 732
           A  A++ AK  G + V     +     R+     + + +  A       L + P++R  D
Sbjct: 287 AGAALHMAKMAGRSQVVVAYANERMFSRLEETSRLIQIVRGADREGRFQLFFMPVVRSSD 346

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +   EAL++        I  + F+ +AE   ++  I  +++    R ++        P
Sbjct: 347 GAVEHYEALLRLRDGDGKLIPPATFIPVAESFGLMGDIERWVVAEAVRFLVK------NP 400

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++ + L D E+   ++ ++  T     R+    +E+  + +   +   + +LR
Sbjct: 401 QLRLYVNLSGESLGDKEILNFIEEIVQTTPAIHGRLGFEITETAAVRDLMSAEQWVQKLR 460

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIE 910
            +G    LDDFG+  S  +YL  +P D +K +GS +       +R A+++ I  +  ++ 
Sbjct: 461 SLGCRFALDDFGSGYSSFAYLNKLPVDFIKIDGSFVRSIDHDPERHALVKGINQLVHSLG 520

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              I++ +  +   + +  MG +Y Q  ++  P     
Sbjct: 521 KRTISEYVENDRIWRLIREMGIEYGQGYYLGEPSPLPQ 558


>gi|200391114|ref|ZP_03217725.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603559|gb|EDZ02105.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 663

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|207856783|ref|YP_002243434.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708586|emb|CAR32907.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 660

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|213586095|ref|ZP_03367921.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 565

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 9   AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 64

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 65  R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 118

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 119 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 175

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F +++    +   +  
Sbjct: 176 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEA 234

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 235 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 294

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 295 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 353

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 354 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 411

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 412 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 471

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 472 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 531

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 532 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 560


>gi|327190332|gb|EGE57430.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 550

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 137/530 (25%), Positives = 240/530 (45%), Gaps = 25/530 (4%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P I  + G    S   P  ++  +    D+        S     +       R+    
Sbjct: 32  FNP-IEDLHGNVLPSSVKPAASFWEHFPELDKSAITLAFRSLDDNAQP-----LRISGDL 85

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
                  + I  +    GD+   +     I +++ +L   L  A  D LTG+PNR+ F +
Sbjct: 86  GAAGSHGLTIYRI----GDLFAVVRSEERIDDERATL---LHLATHDPLTGLPNRRQFSE 138

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            LT +L  +A       ++M +D+D +K +ND LG A GD +L S   RI   L   D  
Sbjct: 139 DLTALLQETAGASET-LSLMQLDLDDFKPVNDTLGHAAGDKLLQSAAMRILACLSSDDRA 197

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            RL+G+ F +I +   +  K    A  +  +   P  +    + V  SIG ++  S   T
Sbjct: 198 YRLAGDEFTVISVGSGHPAKAHRLADDLVAAFKKPFTINGIAVFVGTSIGISTAPSDGTT 257

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPI 727
             E++K ++LA+Y AK  G    ++F  +              L +A+   + Y+ Y PI
Sbjct: 258 PEELMKASDLALYTAKKEGRGRAKAFDPAMLELLEQRELLRRSLRMALVQQQFYVEYQPI 317

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  +VG EAL++W HP  G I  + F+ +AE   M+  I  ++LE+   + + W +
Sbjct: 318 --AEGGCMVGFEALLRWHHPLLGKIPPASFIPMAEADGMMPEIGAWVLEQACHEAMKWPE 375

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   + +N+++ + L + L + +   +      P R++L  +ESV++     +   
Sbjct: 376 NYI-----VAVNLSAAEFLTSGLTDRISQTLDLVGLPPERLELEITESVLLERTVNNIDT 430

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905
           L  L  +GI ++LDDFGT+ S LSYL   PFDT+K +   +T     +K  AI+R I+ +
Sbjct: 431 LNTLNVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLEIDQKSQAIVRCIVNL 490

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A +++  + A+ +      + L  +GCD +Q   V+ PL   +I + +  
Sbjct: 491 AHDLDMQVTAEGVETPGQAEWLHSVGCDRLQGYLVSRPLPVEAIEEFITR 540


>gi|167618394|ref|ZP_02387025.1| EAL/GGDEF domain protein [Burkholderia thailandensis Bt4]
 gi|257139814|ref|ZP_05588076.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 772

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/434 (29%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVTNEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WRD+ +   + + +NI+       +L + +   + +T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRDEGHD-KLTLAVNISPVQFWRGDLIDTISRALVETGI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+K+GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKKLGIRVALDDFGTGYSSLSYLHRFSVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIPALLAR 745


>gi|300927796|ref|ZP_07143360.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300464189|gb|EFK27682.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
          Length = 619

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 61  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 114

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 115 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 174

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 175 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINHA---DNNKVGVVYLD 231

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 232 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 290

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 291 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 350

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +   A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 351 CVFTPEMNQRVFEYLWLDTNFRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 409

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 410 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 467

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 468 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSL 527

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 528 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 587

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 588 KNGINERQGFLFAKPMPAVAFERWYKRYL 616


>gi|161613817|ref|YP_001587782.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161363181|gb|ABX66949.1| hypothetical protein SPAB_01551 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 663

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|62180267|ref|YP_216684.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127900|gb|AAX65603.1| putative PAS/PAC domain; diguanylate cyclase/phosphodiesterase
           domain 1; Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 660

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|146337655|ref|YP_001202703.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. ORS278]
 gi|146190461|emb|CAL74460.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS and GAF domains [Bradyrhizobium sp. ORS278]
          Length = 894

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 113/478 (23%), Positives = 222/478 (46%), Gaps = 13/478 (2%)

Query: 485 VRAADNQF-----HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           ++  D +       +      P       +   + + +   E+++    I   A+ D LT
Sbjct: 382 IKGKDGRVIGTFAFYFRECRGPSPWHEQIVAACVQLGSLAIERQEVRSTISQVAYHDMLT 441

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR      +   +      +     V  +D D +K +ND LG A GD+ LV+   R+
Sbjct: 442 GLPNRARIPSMIAEAIKACP--EGSHLAVAFLDADNFKDVNDTLGHAAGDEFLVAFANRL 499

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              ++  D+L RL G+ F I+L +       +  A  +  ++AMP+ + +R++ ++AS+G
Sbjct: 500 RAQIRPGDMLGRLGGDEFVIVLQNRGALE-ASLAAARITAALAMPLTIGKRQVPMSASMG 558

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVEN 717
            + +  +      ++K A+ AMY AK  G      F     +     +     L  A+ +
Sbjct: 559 LSLYPDNATDIETLIKQADGAMYKAKRAGRATYRFFSADIDKLAEERLMHSTALREAIAS 618

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L L Y P I   +  I G+EAL +W  P  G +S ++F+ +AEE  +I+ I ++ ++ 
Sbjct: 619 EALTLHYQPQICTRNGAIHGVEALARWHDPVLGEVSPAKFIPLAEECGLIEQIGVWSIKT 678

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             + + SWR      P  + +N++  +  +  L   +  +++      + + L  +E V+
Sbjct: 679 ACQQMASWRRAGLDIPC-MSVNLSPINFQNVNLAAVVAQILAANDLPANMLMLEITEGVI 737

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895
           +         +  LR +G+ L+LDDFGT  S LS L  +P   +K + S M    + +  
Sbjct: 738 LNERATVIATMSELRNMGVGLSLDDFGTGYSSLSRLAQLPIHELKIDRSFMRDFENGQGT 797

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            AI+ +++ + ++++  ++A+ +  E   K L  +GCD +Q    A P+  ++  + L
Sbjct: 798 RAIVTAVVRVGQSLDVKVVAEGVETEGQRKLLAELGCDAMQGFLFARPMAASAFSRWL 855



 Score = 58.4 bits (140), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 5/129 (3%)

Query: 401 FSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               ER +L       S   V   D     + T     +I G  +    G     L  + 
Sbjct: 140 VQLRERNALMTSVADRSNRGVVVADHELKILYTNAAFTSIFGFTAEEAQGQQVEKL-LVG 198

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                     L   +   +G ++ +  +   D    W    ++   N  G +   +G+ +
Sbjct: 199 PCTDPAMVERLKQCIIDDQG-VEEDLLIYDKDGHEIWTTAHVKAHRNRQGKVKYLVGLLS 257

Query: 518 DITEQKKSL 526
           DI E K+  
Sbjct: 258 DIRETKQLR 266



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 11/127 (8%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT----ILD 469
           + + V   D            A +LG    S+ G   + +      D    R+      D
Sbjct: 26  TSEAVVFLDGHGRVHHANKAAAELLGRDPASLAG--ADLIDLGLPADVMPARSTDETAED 83

Query: 470 SFVGYRRGR----LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                R  R    L  E  +R  D     + +  R    +    +R + +  DIT + + 
Sbjct: 84  DAADGRPARAQPDLACELTIRKGDGSRCRVHLT-RCDLPAGLTPVRALLLLRDITTEVQL 142

Query: 526 LEGILCN 532
            E     
Sbjct: 143 RERNALM 149


>gi|118593589|ref|ZP_01550966.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia
           aggregata IAM 12614]
 gi|118433807|gb|EAV40467.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Stappia
           aggregata IAM 12614]
          Length = 722

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 217/446 (48%), Gaps = 19/446 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + ++  I   A+ D +T +PNR+SF     + +  +     +R +V+ ID+D++K++ND 
Sbjct: 253 RSNMARIHELAYLDPVTRLPNRESFRLHFNSNMQTADGTP-VRMSVLFIDLDRFKRVNDS 311

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPD-----------ILARLSGNRFGIILISENNSLKIA 631
            G   GD +L  +  R+  LL   D           ++ARL G+ F I++ +E     + 
Sbjct: 312 YGHDHGDALLKEVASRLRRLLNSADRAGEAPPAFPPLVARLGGDEFAIVIPAEKPMANVY 371

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + + +  P+ +    + V ASIG +++       + +LKNA++AMY AK  GGN 
Sbjct: 372 TLADELVQCVEQPLEINGLTMAVGASIGVSTYPDDGEDYTAILKNADIAMYAAKRTGGNR 431

Query: 692 VESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              F      S   +R+ ++ +L  A+   E+ + + P I     ++ G E L +WDHP+
Sbjct: 432 ACFFNEIERDSRSHERIRLEAELKRALLADEITIAFQPKIDCATLKVAGAEVLARWDHPE 491

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G ++   F+ +AEE  +I  +   +LE+  R    W D      + + +N++ + L   
Sbjct: 492 RGLLTPGCFIDVAEESDLITRLGDRVLEQACRQGRVWLDHG--QRLPLAVNVSIRQLEKP 549

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                +  ++  T +  S ++L  +E+V M +P+R       L + GI+  +DDFGT  S
Sbjct: 550 GFTARVLDVLEVTGFPASLLQLEVTETVAMRDPDRVSEAAKPLLEAGITFAIDDFGTGYS 609

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L++L  +PF+T K + S ++G        +I+++I+ MAK++   ++A+ +  E     
Sbjct: 610 SLAHLQRLPFNTFKIDRSFISGLAADHHSRSIVQTILAMAKSLHYEVVAEGVETEEQYLF 669

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKL 952
           L   GC   Q    A P+        
Sbjct: 670 LAENGCTTAQGFLFARPMTAEHFEAW 695


>gi|13474317|ref|NP_105885.1| hypothetical protein mlr5176 [Mesorhizobium loti MAFF303099]
 gi|14025069|dbj|BAB51671.1| mlr5176 [Mesorhizobium loti MAFF303099]
          Length = 779

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 144/694 (20%), Positives = 282/694 (40%), Gaps = 41/694 (5%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFY-YPMVTASIARITLASIVLYYTYFIIYHGMK 332
              RW              +  L  +S Y YP   A +A  +LA   L       Y    
Sbjct: 84  EARRWERTYILKGSLQGLGLGALCFISIYVYPDPFAELAATSLAIATLVTVVGRNYGS-- 141

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                 L++  + + FI    L + +   + + ++   ++  L  I I     V   + +
Sbjct: 142 -----PLMVRIFSVTFIGPAALALLLRMDVPS-VVLGLMIIPLTFITINSADHVRNVLFS 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRN 451
                +       R   A+      +              + A ++ L ++ ++ G   +
Sbjct: 196 AVIGHKEARKLALRFDRALNTMSHGLVMLGPDGRVAVANAEAAHLMSLKSANALLGRSIH 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L         +   D       L   +   R R      V  A+ Q +    R      
Sbjct: 256 GLLMRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVL---VSLANGQHYEFSAR------ 306

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G     +    D+T + ++ + I   A  DNLTG+PNR  F + +   +     D   
Sbjct: 307 -EGSQELGVITFEDVTARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGDRDRFC 365

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+  D+D +K +ND LG  +GD ++ ++  R+  +      ++R  G+ F +     
Sbjct: 366 GLAVL--DLDDFKSVNDTLGHPIGDGLIYAVAERLAAVAGQGITVSRFGGDEFMVFFDRI 423

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   +      +  ++   +++    + +  S G             M+  A+LA+Y A
Sbjct: 424 EDESHLTTQTDEIFAALQGEVDVAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLALYKA 483

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F  +   + R    +K DL  AVE+  L +VY PI+ +    I   EAL 
Sbjct: 484 KELGKNGWRLFEAAMDAAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCEALC 543

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +WDHP  G IS S F+ +AEE+ +I  I+ F+L+    +   W DQ       + +N+++
Sbjct: 544 RWDHPDLGPISPSIFIPLAEEMGIISEISTFVLQAACTECAKWPDQT-----SVSVNLSA 598

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           KD    ++ + ++  ++ +  +  R+++  +E+ ++ +   +R  +  L++IG+ + LDD
Sbjct: 599 KDFRSRDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLTRQYIEELKQIGVRIALDD 658

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  +P D +K + S +   T+   +  +L+ I+ +++ +  ++  + +  
Sbjct: 659 FGTGYSSLSYLHKLPLDKIKIDRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVET 718

Query: 921 EIDIKELTRMGC--DYIQDSHVASPLGFNSILKL 952
              +K L  +    D +Q     + L  + I  +
Sbjct: 719 FEQLKIL-ALQVKPDLVQGFLFGAALSASGIETM 751


>gi|262040014|ref|ZP_06013277.1| sensory box/GGDEF domain/EAL domain protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042630|gb|EEW43638.1| sensory box/GGDEF domain/EAL domain protein [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 595

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 128/425 (30%), Positives = 214/425 (50%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 178 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYKGC-AVVMLFDLDSFKDVNDTLGH 236

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  ++L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 237 DAGDKLLQDLASRLSFFRKTSEMLYRLGGDEFAMLSYDLTEEMALER-ANVIREKISQPY 295

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 296 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 354

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 355 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 414

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I A+  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 415 IGLINALGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIEVLHQTGL 469

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR+ GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 470 DPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSCLSYFPFDKIKI 529

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 530 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIG 589

Query: 942 SPLGF 946
            P   
Sbjct: 590 KPSPL 594


>gi|326627689|gb|EGE34032.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 663

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLAQFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|167835918|ref|ZP_02462801.1| EAL/GGDEF domain protein [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 315 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 372

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 373 NAGDIVLQMTAARLSDAVTNEGALARIGGDEFVVVVKGENVERRAEHLAEAIVRMFAEPF 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 433 DVRGSSFVLHASIGIALHSVGNESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 492

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 493 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 552

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WRD+ +   + + +NI+       +L + +   + +T  
Sbjct: 553 TGLIVPIGDFVIRTACEQLARWRDEGHD-KLTLAVNISPVQFWRGDLIDTISRALVETRI 611

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 612 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFSVDTLKV 671

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 672 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 731

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 732 RPVPSDGIPALLAR 745


>gi|88857522|ref|ZP_01132165.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudoalteromonas
           tunicata D2]
 gi|88820719|gb|EAR30531.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Pseudoalteromonas
           tunicata D2]
          Length = 908

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/558 (22%), Positives = 247/558 (44%), Gaps = 13/558 (2%)

Query: 405 ERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           ++  L +       + V   D  +  V        I G     +HG   + L      + 
Sbjct: 353 QQLELVLRVFENMNEAVLITDGQQKIVKINRAFTDITGYELSDLHGSTPSILNS-GRQNA 411

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + +  +  S      G    E   R  + +     ++I  + + N  +L Y  I +DI+E
Sbjct: 412 EFYEKMWASIQEQ--GHWHGEMWNRRKNGEVFPEWLKIATICDENNKVLYYYSIFSDISE 469

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++ E +   A  D+LTG+PNR    +RLT  + L+   +     V+ ID+D +K IND
Sbjct: 470 KKRTQELMRFQANFDHLTGLPNRTLVFERLTNSVKLAKRANQ-EMAVLYIDLDMFKLIND 528

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD+++  +  R   +++  DILAR+ G+ F II  +          A  ++  +
Sbjct: 529 SKGHLVGDELIKQVADRFKSVIRSSDILARVGGDEFVIIANAITPEYSAELVADKLQAVL 588

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +P  +    +  ++S+G A +    I +  +L  +E AMY AK  G      +  +  +
Sbjct: 589 KVPFMIGNERLHTSSSLGIALYPFDGIEAGTLLLKSEQAMYQAKELGRQKSHFYTDTMQQ 648

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +    +KE +   +E  E Y+   PI+ +   ++   E+L +W+    G ++  EF+ 
Sbjct: 649 AAKRRQLVKEAMLYGLEQDEFYVQLQPIVCVASNKVTKYESLARWNSKTLGQVAPIEFIA 708

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AE   +I  I   + ++    I       +     + IN + K+    ++   +  LI 
Sbjct: 709 AAEYFGLIDQIGFLVAQKALIAIEKINTATHQVA-QVAINRSIKEFSSTQVMP-LSELIK 766

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   PS + L  +ESV+M     +   +  LR +G+ + +DDFGT  S LSYL   P D
Sbjct: 767 QSNVPPSWVILELTESVLMIEQLTNNHEIFLLRDMGVKIAIDDFGTGYSSLSYLSKFPVD 826

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +           ++ +I+ +A+ ++   + + I  +  +  ++ +G  Y Q 
Sbjct: 827 MLKIDRSFIANIETDPSARRLIDTILKLAEGLDLETVIEGIETQAQLDFISELGATYYQG 886

Query: 938 SHVASPLGFNSILKLLKE 955
            + + P    ++L+ +  
Sbjct: 887 YYFSKPKRVATLLEEITR 904



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 56/156 (35%), Gaps = 9/156 (5%)

Query: 380 ILIGFTVIQHVLATGYF-----SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           ++     +Q                ++++  +   A   +    W  D   + V  + + 
Sbjct: 205 LVQTLNTMQQRFRRDLLTIEQQQTKLYNNIAQLKNAEQLAQLGWWRLDPTDNTVFWSKEW 264

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             IL +++ +     + ++  I   D +      D+     +     E RVR A  +  W
Sbjct: 265 HKILSMSAKA-TASHQAFMDLIIDEDAEQISVAFDTLFQQHQ-SFNLEHRVRLATGEEIW 322

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +    +   + +G    +IG   DIT +K++ + + 
Sbjct: 323 LHHVAQVSHHEDG--YFFIGTIQDITLRKRNNQQLE 356


>gi|194451806|ref|YP_002045745.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|198242265|ref|YP_002215442.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205358994|ref|ZP_03224186.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194410110|gb|ACF70329.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197936781|gb|ACH74114.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205339461|gb|EDZ26225.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|326623189|gb|EGE29534.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 663

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|115522908|ref|YP_779819.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115516855|gb|ABJ04839.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 812

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 214/436 (49%), Gaps = 12/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   AF D LTG+PNR  F+++   +LD +A     R  ++ ID+D +K +ND LG 
Sbjct: 358 QERIRELAFFDQLTGLPNRTCFIEQAQQVLDDAAA-VRKRSALLFIDLDNFKTLNDTLGH 416

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA------MRK 639
            +GD +L    +R+ + +     +AR  G+ F ++L +   + +      A      + +
Sbjct: 417 NMGDMLLQQAAKRLLDCIDHTGSVARFGGDEFVVLLPALAATTEAEAELAAGAVAEAILQ 476

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S++ P +L     +   S+G A    +  T  E+L+ A+LAMY AK  G N +  F  S 
Sbjct: 477 SLSRPYDLAGIVHSCPPSVGIALVGLAPTTFDELLQQADLAMYEAKAAGRNTLRFFAPSM 536

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +   R  ++ DL   +      L +   I +    +VG EALI+W H + G +   +F
Sbjct: 537 QATISQRRALEADLRDDLRVRNFELHFQAQIDVA-GRLVGAEALIRWPHKRRGYVPPDQF 595

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE   +I  I  +++E     +  W  +  +  + + IN+++  L D +  + + A 
Sbjct: 596 IGIAETTGLILPIGNWVIEEACNRLKQWSARPGLANLSLAINVSAVQLHDEQFVDHLVAT 655

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P+ +KL  +ESV++   +     + RLR+ G+  +LDDFGT  S L YL  +P
Sbjct: 656 LERTGADPNLLKLELTESVLIDCNDDVIERMNRLREKGVRFSLDDFGTGYSSLLYLRKLP 715

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + S +          AI + II + K +   ++A+ +  E  ++EL  MGCD  
Sbjct: 716 IEQLKIDRSFVRDILVDANDAAIAKMIIALGKTLGLDVLAEGVETEGQLRELIEMGCDAY 775

Query: 936 QDSHVASPLGFNSILK 951
           Q   ++ P+  +   +
Sbjct: 776 QGYLISRPVPVSEFER 791


>gi|91793096|ref|YP_562747.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715098|gb|ABE55024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 763

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/491 (24%), Positives = 230/491 (46%), Gaps = 16/491 (3%)

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              E      D +F ++ + + P  +  G    +  I  D+++ KK+   I   A  D L
Sbjct: 270 WDGELCCEREDGRFIYLALSVTPYRDVFGLQNCFAWIMMDVSDSKKANHLIQYQANNDAL 329

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPT--VMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           TG+ NR+  L+++   +     D+   P   ++ ID+D +K+IND LG   GD +L+++ 
Sbjct: 330 TGLSNRKHLLEKIKKYIHGKQEDNQTLPAFSLLQIDLDNFKQINDTLGHDNGDALLIAVA 389

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+ +      +LARL+G+ F ++L ++ N+ ++++ A ++ + I+    + ++ +  T 
Sbjct: 390 DRLSQACPSKALLARLNGDEFALLLPNKLNAEELSELAQSINQLISERFVIDQQVLYTTV 449

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
           SIG A + +   + S +L  A  AMY AK +G N  + F             I   +   
Sbjct: 450 SIGIARYPADSNSVSALLNCASQAMYSAKEKGRNGFQFFDQQMQLKAERTAYIHTHIKAG 509

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN+E  L Y PI+ +    I   E L++W H +   IS  EF+ +AE+   I  +  ++
Sbjct: 510 LENNEFELYYQPIVNIRTATIHRAEVLLRWHH-EGEFISPDEFIPVAEQTGFIVQLGEWV 568

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNE----LCEGMQALISKTLY---SPSR 827
            +   + I  +          + +N+++ +    E            + +          
Sbjct: 569 RKEAFKTIDLFSQNQLSVD--LSVNVSTMEFWSPELQARFLASFDDTVRELGLDYFPYHM 626

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES++M        LL  LRK GI +++DDFGT  S LSYL   P D +K + + 
Sbjct: 627 LTLEITESLMMQQHTNIANLLQTLRKRGIKVSVDDFGTGYSSLSYLVNFPVDQIKIDKAF 686

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   T+     AI+ +I  ++++++ T+ A+ +  +  +  ++    D +Q  +   P+ 
Sbjct: 687 VQKLTDGHRHIAIVEAIASLSRSLDLTVTAEGVETKEQLAIISGNQIDMVQGYYFYRPMP 746

Query: 946 FNSILKLLKER 956
               L LL E+
Sbjct: 747 KREFLNLLFEQ 757


>gi|330807972|ref|YP_004352434.1| signaling protein [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376080|gb|AEA67430.1| putative signaling protein, putative signal transduction protein
           containing a membrane domain, an EAL and a GGDEF domain;
           putative exported protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 683

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 212/446 (47%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +L  A  D LTG+PNRQ    +L  IL  +      R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGRLQR-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L++L  R+         LARL G++F ++        + A+ 
Sbjct: 290 DDFKGINEQFSYQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   +  P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEAPFAIDDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKSRSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+   +  LVY P I   D  +VG EALI+W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALAREQFTLVYQPQISYRDLRVVGTEALIRWHHPEHGL 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL 
Sbjct: 470 VPPDLFIPLAEQNGTIIAIGEWVLDQACRQLREWHDQ-GFLDLRMAVNLSTVQLHHAELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQMYRLPPRSLELEVTETGLMEDITTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      E    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDEDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYIIA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  + + PL    +   LK+
Sbjct: 649 EGCHEGQGYYYSKPLPARELGLYLKQ 674


>gi|167625055|ref|YP_001675349.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355077|gb|ABZ77690.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
          Length = 681

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 207/430 (48%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   +   A +D+LTG+PNR   L+ +   +  +    + +  ++ ID+D++K +ND L
Sbjct: 241 NTQNKLRKMATRDHLTGLPNRTLLLETIAVTIQRAKQQQS-QFVLLFIDLDRFKNVNDSL 299

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD  LV + R +   +     +ARL G+ F ++     +  + A+F   +   +  
Sbjct: 300 GHEIGDQFLVRVARNLELAVAQMGTVARLGGDEFVVLADGIASPTQAAEFVDKLLNQLNS 359

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E  +   AS+G A +    + + +++++A++AMY AK  G N    F+       
Sbjct: 360 PMQLNEHTVHPAASVGIAIYPDDGLRAEDLIRHADIAMYSAKASGSNQWAFFKAQMTERA 419

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V +  +  L  A++N+E  L + P + +   E+V  EALI+W       IS   F+ +A
Sbjct: 420 AVRLRTEASLHDALKNNEFLLHFQPKLDIKTGEVVSCEALIRWQ-KDGRLISPISFIPVA 478

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  ++  I  +++E+  + I  W+       + + IN+A +   D  +   ++    + 
Sbjct: 479 EETGIVIPIGRWVIEQSCKTIRDWQ-IRYNFSLPVAINVAPQQFQDASIVPDIKQASLRY 537

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  +++  +E+ +M + + + + L +L+  G  + +DDFGT  S LSYL  +P  T+
Sbjct: 538 QIAPELLEIEITETSLMSDIDSAIIKLKQLKSAGFGIAVDDFGTGYSSLSYLRRLPITTM 597

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++    +  AI  +I+ + K +   I+A+ I  E  +  L    C   Q  + +
Sbjct: 598 KIDRCFVSDL-PEESAIASTILMLGKQLNLNIVAEGIENEQQLSWLQERDCQIGQGFYFS 656

Query: 942 SPLGFNSILK 951
            PL       
Sbjct: 657 QPLSKEEFEA 666


>gi|325981622|ref|YP_004294024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325531141|gb|ADZ25862.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 966

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 132/694 (19%), Positives = 266/694 (38%), Gaps = 19/694 (2%)

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           F       N +     Y+        A     + Y  +   ++  +          + I 
Sbjct: 279 FQLKIFPLNSYEPDKAYLVIITDVTAA---VNNIYDSIWKIALIGLLGLICSEILLFLIF 335

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTV 386
              +   +    ++P           L +A T R+         L    V + + +    
Sbjct: 336 TRLLAKLKDVAFVLPLLANGQFEKFRLSLASTGRVQRFRDEVDTLSEAAVSLSLQLEKLE 395

Query: 387 IQHVLATGYF-SQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +    T     Q      ER      +  +  IV   D   + ++       +   +  
Sbjct: 396 QEVSSRTEMLIEQKNELSKERDFVKNLLDTAQAIVLTQDSNGEIMSLNAYGEMLTRYSES 455

Query: 444 SMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++G   ++L  +  + +  +    +      +R +L++E      D     +      +
Sbjct: 456 ELYGK--SFLDILIPDYESHDLLFHIKEIHTGQRMQLRHEAITHCKDGTTRHVAWLHSHL 513

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           S  + D    + +  D+TE K+    +   A  D LT + NR+ F + L  +L  +   +
Sbjct: 514 SWKSPDEPSILSVGLDVTEYKRVEGHLAWLADHDPLTNLFNRRRFSEELEQVLSRAERYN 573

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    ++  D+D++K IND  G   GD +L  ++  + + ++  DI  RL G+ F IIL 
Sbjct: 574 HP-GALLFFDLDRFKYINDTSGHQAGDTLLKMVSSMLAQNIRADDITGRLGGDEFAIILP 632

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N +  I      + +     + +  R   ++ASIG A +        ++L  A+LAMY
Sbjct: 633 EINANGAIGVAKKVLDQLGLAQLTINNRTHKISASIGIALFPEHGANIHDLLAAADLAMY 692

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            AK  G N    F       +R+      KE +  +  +    L   PI+ +  ++I   
Sbjct: 693 QAKAMGRNAWYLFSDKDRSRERIHTLVYWKEKIEYSHLHDNFILYLQPIMHVKSKKISHY 752

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++        +S ++F+  AE   +I AI+  +L +    +               I
Sbjct: 753 EVLLRMQDIDGTVLSPADFIPAAEHTGLIHAIDHMVLRKAIAQVAEIYQAGFQVNF--SI 810

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++    D EL   ++A ++     P+ +    +E+  + +   +R L+  ++++G   
Sbjct: 811 NLSAHAFNDPELLPILKAELALHQMDPACVMFEITETAALEDLPGARGLMVEIKELGCGF 870

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916
            LDDFG   S   YL  +P D VK +GS +   +E    + ++ ++  +A+     I A+
Sbjct: 871 VLDDFGVGFSSFYYLRELPVDVVKIDGSFIRNLSENSDDLILVNALCSVARGFGKKITAE 930

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +     +  + +M  DY Q  ++  P   N  L
Sbjct: 931 FVESAEILLLIEKMDIDYAQGYYIGKPAPANQFL 964


>gi|224583808|ref|YP_002637606.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468335|gb|ACN46165.1| hypothetical protein SPC_2029 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714741|gb|EFZ06312.1| Cyclic di-GMP phosphodiesterase Gmr [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 663

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|166998410|ref|ZP_02264270.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|243065473|gb|EES47659.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
          Length = 786

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 329 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 386

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 387 NAGDIVLQMTAARLPDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 446

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 447 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 506

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 507 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 566

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 567 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 625

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 626 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 685

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 686 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 745

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 746 RPVPSDGIAALLAR 759


>gi|299066512|emb|CBJ37702.1| putative diguanylate cyclase(GGDEF domain) and c-di-GMP
           phosphodiesterase (EAL domain) [Ralstonia solanacearum
           CMR15]
          Length = 776

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 135/748 (18%), Positives = 287/748 (38%), Gaps = 39/748 (5%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           S  L   + +       +++ +  L+         LL+       A+             
Sbjct: 32  SRQLPMMYFILISSTWAVALTYRALTPAWLTVGIPLLL---TLACAIRVLHWWQSRRIDP 88

Query: 275 WNRWH----AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
                     +   +               F+Y             +I +    F + H 
Sbjct: 89  TPELALGALRRTNRLASVIAVSFTAWSLALFHYGDAYTRSYLAFYMAITVIACIFCLMHL 148

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                   +++    + F    G    I   ++  ++   L+  L++        V    
Sbjct: 149 RSAAITVTVIVNGVFIAFFAATGQPTFIAIAINMALVSFGLLVILMVHYRDFTVMVNAQT 208

Query: 391 LATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHG 447
            A    ++   +    +   +AV+      +  +   +        IA +L +   ++ G
Sbjct: 209 EARRREAEQSRLLHMIDDMPVAVMTVEPGTFAINYANNTSKRLIDRIAHLLPIEPDALLG 268

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +   + H   +        +     R RL  E            + +++  +  ++G
Sbjct: 269 TSIDVF-HAHPEHQRRLLADPANLPHNTRIRLGPEV-----------LDLKVSAVRANDG 316

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             L  +     +T++ ++   I   A  D LTG+ NR +F ++L   L         R  
Sbjct: 317 SYLGPMLTWALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLAA----PEARLG 372

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGIILISENN 626
           ++ ID+D +K +ND  G   GD +L  + +R+     +    +ARL G+ F +++  ++ 
Sbjct: 373 LLYIDLDGFKLVNDTKGHRAGDALLEQVAQRLRAVCDRPGVAIARLGGDEFAVLVPHDDA 432

Query: 627 SLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               A       +++  P  L  ++ + + ASIG A   +    +  +L  A++A+Y AK
Sbjct: 433 DRAAALATAL-IEALGAPYTLGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAK 491

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALI 742
             G      F        +    ++  L  A+E+   L++ Y PI+ +   ++   EAL+
Sbjct: 492 AAGKGLARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALV 551

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W H + G +S  EF+ IAE+  +I  +  F+L R  R+   W D        + +N++ 
Sbjct: 552 RWHHAERGWVSPDEFVPIAEQSGLIDQLGRFVLHRACREATRWED-----GARVAVNVSP 606

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L    L + + A +  +  +P R+++  +E+ ++ N   S   L +L  +G+ + LDD
Sbjct: 607 MQLGKTTLAQTVHAALVDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDD 666

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L++L   PFD +K + S +           ++++I  + + +  T +A+ +  
Sbjct: 667 FGTGYSSLAHLRAFPFDKIKIDRSFVRDLLTRPDSAVLVKAIADLGRQLGVTTVAEGVET 726

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  ++ +   GC   Q  +   P   + 
Sbjct: 727 QAHVRGIREAGCTEAQGYYYGRPAPSDE 754


>gi|120610176|ref|YP_969854.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120588640|gb|ABM32080.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 724

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 213/437 (48%), Gaps = 11/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD----NLRPTVMVIDIDKYKKI 579
           ++   +   AF D LT +PNR  F DRL+  L             R  VM +D+D +K I
Sbjct: 261 EANAQLQKQAFADPLTLLPNRLLFEDRLSHALLRLDRMRRRDAGQRLGVMFVDLDGFKPI 320

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G A GD +L S   R+    +  D +AR+ G+ F ++L + N+       A  +  
Sbjct: 321 NDSFGHAAGDAILRSAAERLRLQARESDTVARVGGDEFLLLLENVNDPADCLAVANRLLN 380

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           S+  P  +  + + +  S+G   +        +++ NA+ AMY AK  GGN    F   +
Sbjct: 381 SLGQPFEVAGKTVQIACSVGIVVYPDHGER-DKLVANADAAMYAAKRAGGNGYAMFESHM 439

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S  + ++ ++ DL  A+   EL L Y P I      I G+EAL++W HP  GN+S +EF
Sbjct: 440 DSDATAQLSLQHDLRQAIARGELSLHYQPKIDARRGRINGVEALLRWRHPLRGNVSPAEF 499

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  +++E   R + +W        + + IN+++  L ++ L + ++  
Sbjct: 500 IPVAERFGLIAQLGNWVIEEACRQMAAWSWDGLR--MRVAINLSAYQLRESGLADRIRDA 557

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +     S +    +ESV M +   ++  +  L +IG+ L++DDFGT  S L YL  +P
Sbjct: 558 LQRHGVPASHLLCEITESVAMEDTRATQRAIEELGRIGVYLSIDDFGTGYSSLHYLRSLP 617

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +      E   A++ +++ +A  +   ++A+ +  E     L  M CD +
Sbjct: 618 ARQLKIDRSFVRDLEEQEDARAVVDAVVRLAHALGLRVVAEGVETEGQRDILAAMHCDEL 677

Query: 936 QDSHVASPLGFNSILKL 952
           Q  + A P+  +++L  
Sbjct: 678 QGFYFARPMPADTLLAW 694


>gi|146308343|ref|YP_001188808.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576544|gb|ABP86076.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 711

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 219/454 (48%), Gaps = 6/454 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   ++++   +L  A  D LTG+PNRQ    +L  IL+ +      R  V+ + +
Sbjct: 255 SIERNTHLRREAENSLLRMAQYDFLTGLPNRQQLQQQLDQILEDAGRLQR-RVAVLCVGL 313

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L++L+ R+         LARL G++F ++        + A+ 
Sbjct: 314 DDFKGINEQFSYQSGDQLLLALSDRLRSHSGRLGALARLGGDQFALVQADIEQPYEAAEL 373

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P  L  +E+ + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 374 AQSVLDDLELPFLLDHQEVRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKSRSRNRYQ 433

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++L+LVY P +   D  +VG+EAL++W HP+ G 
Sbjct: 434 FYIASVDSEMRRRRELEKDLRDALALNQLHLVYQPQVDYRDHRVVGVEALLRWQHPQHGF 493

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++   F+ +AE+   I  I  ++L++  R +  W DQ     + + IN+++  L   EL 
Sbjct: 494 VAPDLFIPLAEQNGTIIPIGEWILDQTCRQLREWHDQ-GFTDLRMAINLSTVQLHHAELP 552

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 553 RVVNNLMQVYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 612

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      E    I+R+II + K++   +IA+ +        +  
Sbjct: 613 YLKSLPLDKIKIDKSFVQDLLEDEDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYIIA 672

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            GC   Q    + PL    +   LK+   L    
Sbjct: 673 QGCHEGQGYLYSKPLPARELTLFLKQARRLSAAA 706


>gi|325919030|ref|ZP_08181091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas gardneri ATCC 19865]
 gi|325550466|gb|EGD21259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas gardneri ATCC 19865]
          Length = 780

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 225/441 (51%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +    +    +M I+ID++K IN
Sbjct: 342 EREQIRQRVHQLAFYDALTGLPNRIMFSARAEQALTQA-EYASEPAALMFINIDRFKLIN 400

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A GD +L  +  RIGE L    +LARL+G+ F + L   + + + +  A  +  +
Sbjct: 401 ESQGHAAGDGLLRDIALRIGEQLTATAMLARLAGDEFALALPQCS-AEQASAAAERLLCT 459

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA+P+ +    +  +AS+G A +       + +L++A+LAM  AK  GG     F     
Sbjct: 460 IAVPLAVGHMTVHPSASVGVAMFPEDGRDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 519

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 520 RMAQERVALEAELRQAIGRDQLQLHYQPQLHSAAPHALYGVEALLRWNHPQLGAVSPARF 579

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R  + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 580 LPVAEEQGMMPQLNDWVLRRACQQVADWR-QRGVPVARVSVNLSASSFESPRMLSDLLRL 638

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+     PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 639 IADMGVLPSDLTLEMTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 698

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 699 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 758

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 759 QGYLFSRPLPAAALEAWLGAQ 779



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + A+ GS   +   D+    +        + G     + G   + +     +D++    
Sbjct: 68  LAEALDGSSSAILICDLQSHLLYANDGFQRMFGYTEAELVGKRPSDVLTRAQSDKNEVAR 127

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I +     ++   Q +  V   D    W+ +   P+ ++  +   Y+ +  DIT+ K   
Sbjct: 128 IRERADSLQQT--QADLLVYRKDGTPLWISLNFNPIYDARHNPSHYVAVLTDITDTKMHE 185


>gi|56413372|ref|YP_150447.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362295|ref|YP_002141932.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127629|gb|AAV77135.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093772|emb|CAR59246.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 660

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEASSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKESGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|326316345|ref|YP_004234017.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373181|gb|ADX45450.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 742

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 212/437 (48%), Gaps = 11/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD----NLRPTVMVIDIDKYKKI 579
           ++   +   AF D LT +PNR  F DRL+  L             R  VM +D+D +K I
Sbjct: 279 EANAQLQKQAFADPLTLLPNRLLFEDRLSHALLRLDRLRRRDAGQRLGVMFVDLDGFKPI 338

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G A GD +L S   R+    +  D +AR+ G+ F ++L + N        A  +  
Sbjct: 339 NDSFGHAAGDAILRSAAERLRLQARESDTVARVGGDEFLLLLENVNGPADCLAVAHRLLN 398

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           S+  P  +  + + +  SIG   +        +++ NA+ AMY AK  GGN    F   +
Sbjct: 399 SLGQPFEVAGKTVQIACSIGIVVYPDHGER-DKLVANADAAMYAAKRAGGNSYAMFESHM 457

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S  + ++ ++ DL  A+   EL L Y P I      I G+EAL++W HP+ GN+S  EF
Sbjct: 458 DSDATAQLSLQHDLRQAIPRGELSLHYQPKIDARRGRINGVEALLRWRHPERGNVSPVEF 517

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  +++E   R + +W        + + IN+++  L ++ L + ++  
Sbjct: 518 IPVAERFGLIAQLGNWVIEEACRQMAAWTWDGLR--MRVAINLSAYQLRESGLADRIRDA 575

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +     S +    +ESV M +   ++  +  L +IG+ L++DDFGT  S L YL  +P
Sbjct: 576 LQRHGVPASHLLCEITESVAMEDTRATQRAIEELGRIGVYLSIDDFGTGYSSLHYLRSLP 635

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +      E   A++ +++ +A  +   ++A+ +  E     L  M CD +
Sbjct: 636 ARQLKIDRSFVRDLEEQEDARAVVDAVVRLAHALGLRVVAEGVETEGQRDILAAMHCDEL 695

Query: 936 QDSHVASPLGFNSILKL 952
           Q  + A P+  +++L  
Sbjct: 696 QGFYFARPMPADTLLAW 712


>gi|194471677|ref|ZP_03077661.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205358293|ref|ZP_03223993.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194458041|gb|EDX46880.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335392|gb|EDZ22156.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 663

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|308068152|ref|YP_003869757.1| EAL domain containing protein [Paenibacillus polymyxa E681]
 gi|305857431|gb|ADM69219.1| EAL domain containing protein [Paenibacillus polymyxa E681]
          Length = 713

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 217/435 (49%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +       A+ D++TG+PNR+    RL  IL  S   D     ++V++ID++K IN
Sbjct: 268 EKQAAESEFNHIAYSDDITGLPNRRRLSQRLDKILRKSLKSDET-VALLVLNIDRFKAIN 326

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   G+ +L ++  R+G   +  + +  + G+ F  +L   +++  + +    M K 
Sbjct: 327 DSLGHMAGNYLLYAVGERLGHFSREGEAVFSMGGDEFAFLLTGYDDTDVMRNRIDEMVKL 386

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
              P ++      VT S+G A +      S ++++ A+ A++ AK +G      +  +  
Sbjct: 387 FDQPFDIDGESYHVTVSVGIALYPLDANQSEQLIQQADTAVHSAKEQGVNFQRYASAMQM 446

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ ++ DL  A+E  E  LVY P + L   E+  LEAL++W+HP  G +   +F+ 
Sbjct: 447 RAHERLQLENDLRRALEKEEFSLVYQPRVHLQSGELTSLEALVRWNHPHRGMVMPGDFIP 506

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  +  ++L         W++    PPI I +N++       +L + ++ +++
Sbjct: 507 VAEESGLIVPLGEWVLREACLQNKQWQE-LGYPPIPISVNLSMGQFQQKKLVDVIRGILA 565

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T      ++L  +ES+   + +R+   L +++ IG+++++DDFGT  S L YL  +P D
Sbjct: 566 YTELEARYLELEITESMTF-DKDRAFEQLKKIKAIGVAISIDDFGTGYSSLHYLKNLPID 624

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +       K  AI+ +I  MA +++  + A+ +  E  +  L    C   Q 
Sbjct: 625 RLKIDRSFVNEVLVDSKNAAIVSTIASMAHHLKLKVTAEGVENEEQLHFLQAQDCHEGQG 684

Query: 938 SHVASPLGFNSILKL 952
            + + P+      KL
Sbjct: 685 YYFSRPIPAEVFEKL 699


>gi|56459537|ref|YP_154818.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56178547|gb|AAV81269.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Idiomarina loihiensis L2TR]
          Length = 712

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 132/440 (30%), Positives = 227/440 (51%), Gaps = 9/440 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  + +L  I   A  D++T +PNR++F+D L  +             ++ ID+D +K++
Sbjct: 275 SRLRSALVTIDHQAHFDSITDLPNRRAFVDYLDQLTQKGREQ---HFAILFIDLDHFKEV 331

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD++LVS++ R+   L+  D +AR+ G+ F +++    +   I D A  + +
Sbjct: 332 NDNLGHDAGDELLVSVSDRLRNQLRGSDFIARIGGDEFVVVINRFTSHQIINDLASQINR 391

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            ++ P NL + +I  T SIG A +    I +SE+LKNA+LAMY AK  G      F    
Sbjct: 392 QLSEPFNLRQNQIQTTCSIGIALYPDDGIKASELLKNADLAMYAAKTAGRRTHYFFNDEL 451

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I + +   ++  E YLVY PII     +I   EAL++W       IS +EF
Sbjct: 452 REQTERQNAIHKRMREGLKRHEFYLVYQPIIDFSTGKISKCEALLRWQDEDGNMISPAEF 511

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  F+LE+   D           PI + IN + ++L D E  +   + 
Sbjct: 512 IPVAERTGLIHELGQFVLEQACVDWAVVHKSGY--PIEVSINRSERELNDMESAKRWLSC 569

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           IS+     + I    +ES++M N +R   +L  LR  G+ L +DDFGT  S ++YL   P
Sbjct: 570 ISQHGIPNTSITFEITESLLMSNKQRQLQILHYLRSQGVQLAIDDFGTGYSSINYLQRYP 629

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++ + + +  +A+L +++ +A+ ++  +IA+ +      + L R  CD+ 
Sbjct: 630 VDYIKIDRSFLSQAPQNKVQVALLDALLQVARALDINVIAEGVETRQQWELLQRQRCDFA 689

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q   ++ PL  N +LK LK+
Sbjct: 690 QGYFISEPLPLNELLKFLKD 709


>gi|206602029|gb|EDZ38511.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum sp. Group II '5-way CG']
          Length = 747

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 129/603 (21%), Positives = 258/603 (42%), Gaps = 14/603 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              I                    V+ IG  +I  VL        +          +   
Sbjct: 144 GNEIIGTFALSSYSSRQPNRFQERVLGIGAHIIGIVLDRSRREGLLRLSEN----ILRKI 199

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            + +   D  R  +      +++ G +   + G   +         R  F   +   +  
Sbjct: 200 REAILVTDDERKILFVNEAFSSLTGFSETELAGNRVDTDTL--PFFRTPFGEGIWKHLDT 257

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             G  + +   +  + + +   +R+  M N       Y+ I++DIT +K + + +   A 
Sbjct: 258 -HGFWEGDVPNKKKNGESYLEWLRLSAMQNDRQKTTHYLAISSDITTRKANQDRLDFLAH 316

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR    +R   IL+ S         ++V+D+D +  +N  LG A GD +LV 
Sbjct: 317 HDPLTELPNRVLLRERFEQILE-SVRSKGTSLAILVMDLDNFHLVNSSLGHAAGDLLLVE 375

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++RR+ +L+   +++ R+ G+ F  ++  E     + +    +  S   P+ +   E+  
Sbjct: 376 ISRRLAQLVGPSNMVGRVGGDMFLALVEGERGGKSVVEVVERISDSFRTPLEVDRCELFT 435

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
           + SIG A +     T  +++++A+ AM  AK  G N    F  S     SD + I     
Sbjct: 436 SVSIGVAFYPEHGQTYEDVVRSADRAMACAKSEGKNTYRFFLPSMTVDVSDHLRIHNSFR 495

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             +E +E  L Y P + +   ++  +EAL++W+HP+ G +    F+ +AE   MI  +  
Sbjct: 496 QGLERNEFILHYQPQVGVFSRKVEAVEALVRWNHPEMGFLYPKRFVPVAETTGMIIPLGE 555

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+        W  Q    P  + +NI+   L        +   ++++   P  ++L  
Sbjct: 556 WVLQEACLQASRWNAQGFRVP--VSVNISGIQLRRRNFEATVLDALARSGLPPELLELEL 613

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +E++++ + E     + RL++IG+ L++DDFGT  S L+YL     D +K + + +    
Sbjct: 614 TETMLLEDSEGLLRSIARLKEIGVRLSIDDFGTGYSNLAYLKRFDADKIKIDQTFVHAGS 673

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              ++  I+R I  ++  +  + +A+ +     ++ L  +G D IQ + ++ PL   S  
Sbjct: 674 QNPEQQGIVRMIAGISHVLGLSAVAEGVETGDQMEYLVEIGIDSIQGNFLSKPLDPVSCE 733

Query: 951 KLL 953
           + L
Sbjct: 734 EYL 736


>gi|302522065|ref|ZP_07274407.1| phosphodiesterase [Streptomyces sp. SPB78]
 gi|302430960|gb|EFL02776.1| phosphodiesterase [Streptomyces sp. SPB78]
          Length = 752

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 220/440 (50%), Gaps = 8/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    +         +D LTG+PNRQ  L+R+ T LD +  +   R  +++ID+D+++ +
Sbjct: 294 TSLWMAHARAEEQ-LRDPLTGLPNRQWLLERIWTALDAAEREGG-RTALLLIDLDRFRSV 351

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+ +  R+   L      ARL G+ F I+L + +++      A  +  
Sbjct: 352 NDTLGHLAGDRLLLQVAERLRVSLPREAEAARLGGDEFAILLPAADSTTSAQRLARRLVG 411

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVS 698
            +  P++L    + + AS G A +    + +  +L+ A++AMY AK  R G  V   +  
Sbjct: 412 ELGSPLDLDGLTLVLEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRD 471

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   DR+ +  DL  A++  ++ L Y P +R  D E+ GLEAL++W HP+ G +   EF+
Sbjct: 472 SNTPDRLGLLGDLRRALDTGDVELHYQPKVRF-DGEVAGLEALVRWVHPERGKVPPDEFI 530

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   ++  +  ++LE     +  WR Q    P  + +N++ +D+        +   +
Sbjct: 531 AIAESSGLMPYLTEYVLETALAQVARWRAQGLYVP--VAVNVSPRDVHTPGFAGAVAGRL 588

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P  ++L  +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P 
Sbjct: 589 ARHGVPPGALQLEITEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPV 648

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q
Sbjct: 649 SELKIDRSFVARLAIDTEDAEIVRCTVDLAHSLGLVVVAEGVEDDETWERLRDLGCDAVQ 708

Query: 937 DSHVASPLGFNSILKLLKER 956
              V++ +        L+ R
Sbjct: 709 GWLVSAAMPPEETTAWLRAR 728


>gi|310827142|ref|YP_003959499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Eubacterium limosum KIST612]
 gi|308738876|gb|ADO36536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Eubacterium limosum KIST612]
          Length = 1012

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 110/550 (20%), Positives = 229/550 (41%), Gaps = 23/550 (4%)

Query: 403  DGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            D E    A+   + D ++  ++  +    +  +     L    +      W   +H  D+
Sbjct: 469  DKEHLYDALVQSTDDYIYVCNMKTNTFRYSKAMVEEFDLPGEVIENAAAVWGARVHDLDK 528

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              F          R      E+R R    ++ WM  R     + +G+   + GI  ++ +
Sbjct: 529  KAFLESNQEITDGRTDCHSVEYRARNRKGEWVWMRCRGHLERDESGEPTLFAGIITNLGK 588

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + K           D+LTG+ N+  F + +  ++    T  +    +M++ ID++K+IND
Sbjct: 589  KNKI----------DHLTGLFNKFEFEEEIERLIS---TKPDQPIGIMILGIDEFKRIND 635

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +   + GD+V+  ++++I   L     + R+ G+ FGIIL +      + +    + +++
Sbjct: 636  LYNRSFGDEVIRIISQKIQTFLPPDATVYRMDGDEFGIILRNGT-VHGLENIYGKIYQAV 694

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                    ++   T S G   +     T  +++K A  ++ +AK++G N +  F      
Sbjct: 695  NHQQEFNGKKFYCTLSAGCTLYPLDGKTYLDLIKYAGYSLEYAKNKGKNQIAFFSEDILI 754

Query: 702  SDRVMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 +   E L  +VE       + Y   +     +I G EAL +W   K+G +   +F
Sbjct: 755  GKTRQLDLTELLRESVEQGFENFEVYYQLQVNADTRKIKGAEALARWKCEKYGQVPPDQF 814

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + I EE  +I  +  ++ E+       W  +   P   I +N++   L D    + M+  
Sbjct: 815  IPILEESGLIIPVGKWIFEQALGACARWIKK--DPDFVISVNLSYVQLEDAGFIDFMERT 872

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +  +   P+ + +  +ES +  N  R   +  R+R  G+ + +DDFGT  S L  L  IP
Sbjct: 873  VLSSGVPPANVVVEMTESYIASNINRVEGIFDRIRSFGMKIAMDDFGTGYSSLGILKKIP 932

Query: 878  FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D VK +   +    ++   +  ++ I+ +  ++   +  + +  E + + +     D+I
Sbjct: 933  ADIVKIDRIFVKDVQTSHFDLTFIKFIVELCHDVGIEVCLEGVETEGEYEAVKPHAVDFI 992

Query: 936  QDSHVASPLG 945
            Q      P+ 
Sbjct: 993  QGYLFGRPVP 1002



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 111/343 (32%), Gaps = 30/343 (8%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           +   + + K     +     +  L L+   I   +I       Y  QG   +       +
Sbjct: 122 LAGALLVHKPEKTGLWSEEEIALLKLMASTISVALINRARYEEYALQGYVFNE-----MM 176

Query: 412 LGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIH------INDRDNF 464
             +   ++  D+  + +      +     +         +     +              
Sbjct: 177 DNTSTNIYVTDVETNEILFMNKAMQKSFEIEKPEGKICWQVLQKGMEGPCPFCP-----V 231

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +L     +     + E                   M  ++G  + +     D T  ++
Sbjct: 232 PGLLKDEDEHPSVVWEEE---NTRTG--ITYKNYDSFMQWTDGRTVHFQQSV-DHTTTRQ 285

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   A  D LT + NR++    L   L  +  D  +R  V + D++  K++ND  G
Sbjct: 286 L----EKAAATDELTELLNRRAGKLALDHTLSQAKRD-KIRVIVGMYDVNDLKEVNDTYG 340

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD +L ++ R I E L   D   RLSG+ F I+     +     +     R+ I + 
Sbjct: 341 HAEGDVLLKTIARNIKECLAPQDYTFRLSGDEFIIVFKD-TDLTASKEKVRRARERIQLF 399

Query: 645 INLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKH 686
               ++   +    G+       + T +E+L N +  MY  K 
Sbjct: 400 KEKHQKLYEMNFCCGYEEVEPDDQRTITEILTNVDEKMYEKKR 442


>gi|302187253|ref|ZP_07263926.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 763

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 154/709 (21%), Positives = 303/709 (42%), Gaps = 31/709 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY---TYFIIYHG 330
           +        G    +  A + I   +     + +  + +   A  +       +FI    
Sbjct: 25  NLFLVALAYGVACAACFATLDIADRVIQVDALRSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
            +   +    +   ++  +  +       + L    +          +V+ IG +V+ ++
Sbjct: 85  FQAPLKIAYDLSITLISLLIVLITAFVAMRALTIPELTLRRCLISA-VVMGIGISVMHYL 143

Query: 391 LATGYFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +   S        R  +L  ++     +    + R           +   A   + G 
Sbjct: 144 GMSAMRSAAEQYYEPRMFALSILVAVLSSIALLTLSRHLRQYNGMFHQMFRYAVSLLLG- 202

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------- 501
               L  +H+      R ++   +       +   ++         +II           
Sbjct: 203 --AGLLTMHLMGMKALRLVIPEGIELSGPTTENSQQLGLTIAAIALLIIAGSISAAMADK 260

Query: 502 -MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     D+ R   +   + + + SL+ +   A  D LT + NR+ F       L    T
Sbjct: 261 KLQGKEHDLQRVNALLTQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HT 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    VM +DID +K+IND LG   GDD+L  +  RI    +  D++AR  G+ F  I
Sbjct: 317 YNNGMLAVMFLDIDHFKRINDSLGHDAGDDLLKVIAERIRNATRAQDVVARFGGDEF-CI 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA
Sbjct: 376 LLSIPDYEEARHLAHRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLA 435

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVG 737
           +Y +K +G N V  F     +  S  + ++E+L  A+     L + Y PI+ +    +  
Sbjct: 436 LYQSKEKGRNGVNFFNPALKTKASLELQLEEELRNALREGKGLQVYYQPIVDMRTGHVAK 495

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LEAL++W+HP  G +  + F+ IAE   +I  ++ ++L R   D+ + R +     + I 
Sbjct: 496 LEALVRWNHPHHGLLVPARFISIAETNGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIIS 554

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N ++  L  NEL E ++  ++    +P +++L  +E+ +MGN   +  +L  +R +G+S
Sbjct: 555 VNCSALTLGRNELVEEVERALADADAAPGQLELEVTENALMGNISNTIQMLKHIRSLGVS 614

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ 
Sbjct: 615 LSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVT 674

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
           + +  +  ++ L + G DY+Q    + P     IL L   + +  P  +
Sbjct: 675 EGVETQDQLEFLRQFGSDYVQGYLFSRPQPLERILPLARQMNQHEPTTR 723


>gi|254505126|ref|ZP_05117277.1| hypothetical protein SADFL11_5166 [Labrenzia alexandrii DFL-11]
 gi|222441197|gb|EEE47876.1| hypothetical protein SADFL11_5166 [Labrenzia alexandrii DFL-11]
          Length = 900

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 132/608 (21%), Positives = 259/608 (42%), Gaps = 19/608 (3%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
               +   T  L   +I   +  GLV    +        +  +    +    D     + 
Sbjct: 157 LAVTYETQTHWLIGFLIAITVALGLVGFYAV-------RLHESRKNLRKANQDLMLADMV 209

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              + + +   D     +   P +A I G     + G     +      D       +  
Sbjct: 210 FRHANEGILVTDADGIVIQANPAVARISGENLDEIIGQNP--MKIASDRDCSEILRQMSR 267

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +    G    E      D + +   + +  + + NG +  YI I +DIT+ K     + 
Sbjct: 268 TLAE-TGEWAGELWNVRPDGERYAQRVSVAAIKDENGTLTNYISIFSDITDLKNHQYELE 326

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LT +PNR    +RL+  ++    D N    V   D+D +K+IND  G  +GD+
Sbjct: 327 RIAHYDPLTELPNRVLLRERLSEAIERVKRD-NCWGAVFFFDLDGFKEINDRYGHELGDE 385

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L +++RR+    +  D +ARL G+ F  ++    +       A  +    + PI+L ++
Sbjct: 386 LLTTVSRRLLSQFRSTDTVARLGGDEFIAVVSDYESPDAYRTLAERVLAETSKPIDLGDK 445

Query: 651 EITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
            + ++ S+G A++++    T  ++L+ ++ AMY +K  G N    F        +     
Sbjct: 446 SVAISTSVGVAAFSADSDTTPDQLLRQSDSAMYQSKLEGKNRYTLFNPKTEIEITAFNNR 505

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A++N+EL   Y P + ++   I   EAL++W HP+ G      F+   E + + 
Sbjct: 506 INALSDAIDNNELVFHYQPKVDVISGRIHSAEALVRWQHPEVGIRYPGSFLDATENIGLS 565

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPS 826
             ++ + LE       +WR      P  I +NI  ++L  N L + ++ L++K    +PS
Sbjct: 566 LKLDTWALETAFETASAWRQAGLEVP--ISVNIDPRNLTSNWLYDTLKGLLAKYDSIAPS 623

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + +   E+          L + + +++G+S ++DDFGT  S L++L ++P D VK + +
Sbjct: 624 LLDIEVLENATAVGNASVALAIKQCQELGVSFSIDDFGTGYSTLTHLRHLPADHVKIDQT 683

Query: 887 LMT-GSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +         +AI+ +++ +A  +   +IA+ +  +     L  +G   +Q   +A PL
Sbjct: 684 FVRAAIDTLDDLAIVDAVLGLAGALNREVIAEGVETKAHQNLLISLGTTILQGYSIARPL 743

Query: 945 GFNSILKL 952
            + + L  
Sbjct: 744 PYGTFLDW 751


>gi|186473822|ref|YP_001861164.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184196154|gb|ACC74118.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 637

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 216/439 (49%), Gaps = 4/439 (0%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +    +   +   A  D LT +PNR++F + L   +   A       T+++ID+D +K I
Sbjct: 187 SRLNDAERRLEYLALTDPLTDLPNRRAFFEELERRIASPARS-KAPLTLVLIDVDDFKTI 245

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD++L  +   + E ++  DI++R+ G+ F ++   +    +    A  +  
Sbjct: 246 NDTLGHGAGDELLKLVAAALKETVRAGDIVSRIGGDEFAVLASLDREPHQSQSTAAKIVL 305

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++A P  L  R + VTASIG++ +         ++ NA++A+Y AK+ G N   +F    
Sbjct: 306 ALARPFTLQGRSVAVTASIGYSRFPDDADDVPALVSNADIALYAAKNNGKNTAVAFEHHM 365

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  +++DL  A+ N  L +VY P       ++ G EAL++W HP  G+IS  EF
Sbjct: 366 VTQAQRRARLEQDLRAAIGNDALSVVYQPQFECRTGKLTGAEALVRWHHPHDGSISPEEF 425

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE   +I  +  +++ R  RD   W  +A+ P    +  ++++ L        +   
Sbjct: 426 IPIAEGSDLIVLLGTWVMRRACRDAAQWNRRASSPVSVSVN-VSARQLGQPTFTHDVLVA 484

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++++  S   + L  +ES++M N +    L+  +R  G+ L++DDFGT  S LSYL   P
Sbjct: 485 LAESGLSSRSLVLEVTESLLMENVDDVTELMKTIRAAGVRLSIDDFGTGYSSLSYLQNFP 544

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            + +K + S +    E    I+ +II MA +   T++A+ +     +  L    CD +Q 
Sbjct: 545 LNELKIDRSFVRSLPESGQPIVTAIISMAHSFGLTVVAEGVEYPAQLAWLVDAQCDVVQG 604

Query: 938 SHVASPLGFNSILKLLKER 956
                P+   +I +L+  +
Sbjct: 605 YLTGRPMSDVAIQRLVSAQ 623


>gi|148258750|ref|YP_001243335.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410923|gb|ABQ39429.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 690

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 226/446 (50%), Gaps = 12/446 (2%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D+   ++++EG    A QD LTG+PNR     RL  +L  +  D+     V+ ID+
Sbjct: 234 AYMIDMQAAQEAVEGYRQLALQDPLTGLPNRNGLGHRLAPLL--ATGDETAHLVVLAIDL 291

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND  G A GD VL ++  RI   L+  + LAR+ G+ F  +        + A F
Sbjct: 292 DRFKDINDAHGHAAGDAVLKTVAERIAATLQRGEFLARIGGDEFVAVKSEIFARTEAAKF 351

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNH 691
           A  +R  +  P++  ER ++V  SIG A      +TS E+L  A+LAMY AK   +G   
Sbjct: 352 ADRIRSLVLAPVDWEERSLSVGCSIGIALHPEHGLTSDELLTRADLAMYRAKSLGQGKIC 411

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +      R  +  DL  A+  +E  L Y         EI+G EAL++W+HP  G 
Sbjct: 412 TYEPSMDEASRRRAELAIDLKRALVRNEFELHYQVQNDTQSGEIIGFEALLRWNHPVKGR 471

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +  ++F+ +AE+  +I  I  +++        SW       P  + +N+A   L +++L 
Sbjct: 472 VPPNDFIPMAEQTGLIVDIGDWVMRTACATAASWSQ-----PFKVAVNVAPMQL-NHDLP 525

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  ++ +T  +P R+++  +E+ ++ + + +  ++  L+ IG+++ +DDFGT  S LS
Sbjct: 526 KRVAEVLRETGLAPERLEIELTETGIIADRQHALQVMQALKAIGVTVAMDDFGTGYSSLS 585

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   PFD +K + S +    ++    AI+++ + + +++   ++A+ +  E  +  L  
Sbjct: 586 TLQVFPFDKIKVDKSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQHLAFLRE 645

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC  +Q      P+   +I +++++
Sbjct: 646 EGCSSVQGFLFGKPMPQEAIHRMIRD 671


>gi|326403745|ref|YP_004283827.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325050607|dbj|BAJ80945.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 947

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 130/575 (22%), Positives = 245/575 (42%), Gaps = 24/575 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++ +       +   +        +  SGD V  +D             T+LGL   
Sbjct: 388 YGTLEDITDRHAAEEARKASEALALRVLEASGDAVIVFDAAGRARFANARAMTMLGLPDD 447

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++   + +     H   R+    +  +      G  +  +          W+      + 
Sbjct: 448 AVGCNVASLFAEAHC--RELRMAVSRAMRDGAGGHFELFWP-----PTDLWLEAS---LF 497

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              GDI  +     DI+E++ + + +   A  D +TG  NR +   RL+  L+    D  
Sbjct: 498 ADGGDISLF---LRDISEKRLAQQQLRYAASFDFMTGAANRGTLFSRLSAQLER--QDAG 552

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D +K+IND  G   GD VL     R+   L+  D+LAR  G+ F ++   
Sbjct: 553 DLTALLCLDLDYFKEINDQHGHPAGDAVLRQFVSRLRLCLRSQDLLARCGGDEFVVMQTG 612

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  +   +  P ++    +  + S+G A  +     +  +   A+ A+Y 
Sbjct: 613 VGGPADAIALAERILAIMRAPFDVDGISLPSSVSVGIAVSSLGMTDADALYNQADRALYV 672

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +       F     R+D     ++ +L  A+   E  L + PI++L  + IVG+EAL
Sbjct: 673 AKSKARGSYRLFHPDMQRADEAGRRLRAELSGALTRGEFALAFQPIVQLASQRIVGVEAL 732

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G I  +EF+ +AEE   I ++  ++L    +    W +      + I +N++
Sbjct: 733 LRWHHPERGLILPAEFIPVAEESGQIASLGAWVLGTACKAARHWPE-----DVKISVNVS 787

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +     ++   +   ++      SR+KL  +ESV++     S  +L  LR+ G+ L LD
Sbjct: 788 PRQFELGDIRLVVGEALAAAGLPASRLKLEVTESVLLSQNASSIHVLQDLREQGVILVLD 847

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL     D VK + S ++       R  I  +I+ M   +   + A+ + 
Sbjct: 848 DFGTGYSSLSYLDTFKVDIVKVDKSFISRIRAPGDRQPIFEAIMGMTAALNLPVTAEGVE 907

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             + +  +TR+GC++ Q  + A P+    + + L+
Sbjct: 908 TRVQLDYVTRLGCEWAQGYYFARPVSEYELRRRLQ 942



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 4/192 (2%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
            A     A            +     + + +     V G    V  +  T  Q +     
Sbjct: 215 MATFREAARSGTAATLEYRVILPDGAVHDVLTHAEPVVGADGTVSQLRGTT-QDITPYRR 273

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               +    +     V     I W        +   P    + G++          W+  
Sbjct: 274 IEAALRESEDHYRHMVELHPQIPWTAGPDGAILEVGPQWFALTGMSRDE--TMPFGWVSA 331

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H +DRD         +      +  E+R+R +D  + WM  R       +G ILR+ G 
Sbjct: 332 LHPDDRDPTLAAWRRNIE-SGAPIDVEYRLRLSDGAYGWMRARAAARRGEDGRILRWYGT 390

Query: 516 ANDITEQKKSLE 527
             DIT++  + E
Sbjct: 391 LEDITDRHAAEE 402



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              E  + A   +    W WD+ R R+  + +   +LGL  G+           IH +D 
Sbjct: 152 QRTEELASAHRLARVGAWRWDLARRRIWLSVETTWLLGLEGGAAEIDYDQMRRAIHPDDY 211

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D                   E+RV   D   H ++    P+  ++G + +  G   DIT 
Sbjct: 212 DAAMATFREAARSGTAA-TLEYRVILPDGAVHDVLTHAEPVVGADGTVSQLRGTTQDITP 270

Query: 522 QKK 524
            ++
Sbjct: 271 YRR 273



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           +L + G G ++WD D V   +          +          +      +H +DR     
Sbjct: 14  ALVLGGRGVVLWDLDPVAGLIRHYHGQAREGVDCPPAE---TVEQVCARVHPDDRAQVGA 70

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGIANDI 519
            L    G      +  +R R A   +   + R R  + ++ G  LR +GI  D+
Sbjct: 71  ALRCDDGQAAPEFEIGYRARDAAGGWIRQVARGRVVVRDAAGRPLRVVGITIDL 124


>gi|117925679|ref|YP_866296.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117609435|gb|ABK44890.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 589

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 130/579 (22%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             L             E     +  + D++    +  +      +      L+       
Sbjct: 14  QSLDAIQVEGASRQQLELFRALLDQAPDMILLVRMQPNLPFVDANGLARQKLSLNPAENV 73

Query: 449 IRNWLPYIHINDRDNFRTIL-DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                  +          +  +  +      +  E  +   D+    + + +R ++    
Sbjct: 74  QHEMAKRLGKALVQRIWDLYGEGGLSDEDRPVNIESSLDLQDHARCPVEVSLRCVTLQGQ 133

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                + I  D+  +K   E IL  A  D LTG+PNR   LDRL   +  +      R  
Sbjct: 134 R--YGVLIIRDVHIRKDHEEAILQQANFDTLTGLPNRTIMLDRLGQAIFRAQR-GRARVG 190

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K++ND +G + GDD+L  +T+R+   ++  D LAR  G++F  IL   +  
Sbjct: 191 LICLDLDRFKQVNDFVGHSQGDDLLKQVTQRLKGCIRSEDTLARAGGDKFVAILQQLHEP 250

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +    A  M   +  P+   + ++ VTAS+G   +  + +T   +  + + AMY AK  
Sbjct: 251 AQALMVAEKMLDVLRQPLAYEDHQLVVTASVGLTLYPDNGLTPEVLFSHGDRAMYQAKED 310

Query: 688 GGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  +          R+ I+  L  A    EL LVY P++ L   +I+G E L++W 
Sbjct: 311 GRNCLRFYTAELDQVARTRIEIESHLRQARVQGELSLVYQPLVDLQRRQIIGAETLLRWT 370

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             + G +S   F+ IAE+   I+ I   +L+        W  Q       + +N++ +  
Sbjct: 371 SARLGEMSPEHFIPIAEDSGAIQEIGTMVLQSAFVQGALWARQMG--AFRLSVNVSVRQF 428

Query: 806 LDNELCEGMQALISKTLYSPSR-IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
              +    +  L+++    P   + L  +E ++M +  +    L +L+K+G+ L++DDFG
Sbjct: 429 KSPDFVPLIAGLMAEA--PPELVLDLELTEHLLMEDDHKVAETLLQLKKLGVHLSIDDFG 486

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSYL   P D +K + + +    +     ++ R+I+ MAK++   I+A+ I    
Sbjct: 487 TGYSSLSYLKQFPIDILKIDRAFVRDVDQDENSASLTRAILSMAKSLNLDIVAEGIERPQ 546

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +  L +  C + Q    + P+      +LL E  P  K
Sbjct: 547 HLDFLLKHACPWGQGYLFSEPVQPARFDRLLLEGLPRDK 585


>gi|160897820|ref|YP_001563402.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160363404|gb|ABX35017.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
          Length = 573

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 217/439 (49%), Gaps = 14/439 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-------DNLRPTVMVIDIDKY 576
           ++   +   AF+D LTG  NR  F  RL   +  + +          +R  ++ ID+D +
Sbjct: 115 RANVKLKRIAFRDPLTGTANRALFEYRLGRTIARADSSVEQPGPCGPVRVGLLYIDLDGF 174

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K INDV G A GD +L  +  R+G + +  D LAR+ G+ F ++L    +       A  
Sbjct: 175 KPINDVEGHAAGDALLCQVAVRLGHMTRKSDTLARVGGDEFVLLLGCLASVDDAVAMAGR 234

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++K+++ P +L  + +++++SIG A +        +++  A+ AMY AK  GGN    F+
Sbjct: 235 VQKALSQPFDLPGKAVSISSSIGVAIYPDHGKK-EKLMAAADAAMYTAKRAGGNTYAIFK 293

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            S  +       +++ L  AV + +L L Y P I      I  +EAL +W+HP++G IS 
Sbjct: 294 ESMRQGVAAQFDLQQALRRAVASQQLVLFYQPKIDTRTGRIRSVEALARWNHPQFGLISP 353

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I  I  ++++   R    W  +     + + INI+   L    L + +
Sbjct: 354 RVFIPLAERFGLISEIGDWVIDEACRQTAQWARERRF--MRVSINISGYQLFQTRLAQFI 411

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              I++    P ++    +ESV M + + +  ++  L  +G+ +++DDFGT  S L+ L 
Sbjct: 412 AEAIARHHIRPEQLVFEITESVAMEDDKTTMAVIAELTGMGVQISIDDFGTGYSSLALLR 471

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D VK + S +          A++ +I+ +A  +E  ++A+ +  +   + L  +GC
Sbjct: 472 QLCADEVKIDRSFVRDVALKSDARAVVDAIVRLAHALELRVVAEGVTNQQQREVLQALGC 531

Query: 933 DYIQDSHVASPLGFNSILK 951
           D +Q  + A P+   +++ 
Sbjct: 532 DELQGFYFARPMDAQALIA 550


>gi|27377505|ref|NP_769034.1| hypothetical protein bll2394 [Bradyrhizobium japonicum USDA 110]
 gi|27350649|dbj|BAC47659.1| bll2394 [Bradyrhizobium japonicum USDA 110]
          Length = 653

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 219/424 (51%), Gaps = 10/424 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            QD LT +PNR +F + L   L   A        V+++D+D++K++ND  G   GD+ LV
Sbjct: 225 RQDPLTHLPNRFAFNETLDAALKRLALSGE-EFAVLLLDLDRFKEVNDKFGHPAGDEFLV 283

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+    +  + +AR+ G+ F +++ +        + A     S A P  +  R+I 
Sbjct: 284 QVASRLQRCTRAAEHVARIGGDEFALVMANLARPEDALEIAERFVASFAEPFPIEGRQIV 343

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
              S+G         T+ +++KNA+ A+Y AK  G   V  F  S  R   DR  ++ DL
Sbjct: 344 GATSVGIVLAPRDGNTALDVMKNADAALYRAKKAGPGTVCFFEDSDDRVSRDRKALQSDL 403

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   EL+L + P + L +  I G EAL++W HP  G +  SEF+ IAEE  +I  I 
Sbjct: 404 EGAIARDELFLAFQPFLDLAENRITGFEALLRWQHPSRGLVPPSEFIPIAEETGLIHEIG 463

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++ R    +  W ++     I + +N ++    +  + + +   ++    SPSR+++ 
Sbjct: 464 EWVIRRACATLADWPEE-----IRVAVNFSAAQFHNTGILQTIVQALAHAKVSPSRLEVE 518

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+++     +  +L  L ++G+++ LDDFGT  S L+YL  +PF  +K + S ++  
Sbjct: 519 ITESMLLSKYGSAASILNALLQLGVTVALDDFGTGFSSLTYLRKLPFSRIKIDQSFISDM 578

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI++S+I +A+++   ++A+ +     ++ L ++ CD +Q   ++ P+  + +
Sbjct: 579 LVQPDCAAIVKSVISLARDLRIAVVAEGVETADQLEYLRQISCDEVQGYLISRPVSADGV 638

Query: 950 LKLL 953
           L LL
Sbjct: 639 LALL 642


>gi|325293584|ref|YP_004279448.1| GGDEF/EAL transmembrane sensory box protein [Agrobacterium sp.
           H13-3]
 gi|325061437|gb|ADY65128.1| putative GGDEF/EAL transmembrane sensory box protein [Agrobacterium
           sp. H13-3]
          Length = 663

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 219/446 (49%), Gaps = 11/446 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D    ++++      +  D LTGIPNR +F++ L                ++ ID+++
Sbjct: 205 VIDAQSTQQAVARYRHLSLHDPLTGIPNRAAFIEHLNR--RTRHLSMGAHTALLSIDLNR 262

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+INDV G A GD VL ++  R   +LK  + LAR+ G+ F  +  S       A+FA 
Sbjct: 263 FKEINDVHGHAAGDAVLRAIADRASSVLKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQ 322

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + I+ P+    +  +V AS+G +   +  I +  ++  A++AMY AK    + +  +
Sbjct: 323 RLIEQISRPVEWNGQTFSVGASVGISVRNTGAIDADTLMAQADVAMYRAKGGTSDTICFY 382

Query: 696 RVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S      +R  +   +   + NSE  L Y          IVG EAL++W HP+ G IS
Sbjct: 383 DKSMDEAARERNALAVAMRSGLANSEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMIS 442

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAE+   I  +  ++L         W+       + I +N+A + L DN+  E 
Sbjct: 443 PVEFIPIAEQTGFIVELGEWVLREACAQAALWKKS-----LSIAVNVAPQQLADNDFPEK 497

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T  +P R++L  +E  ++ +   + + + +L+ +G+ + +DD+GT  S LS L
Sbjct: 498 VEKILRETALAPERLELEITEGSIIADHRHALITIRKLKALGVKIAMDDYGTGYSSLSTL 557

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + + + G +      AI+RS + +A ++   ++A+ +  +  I+ L R G
Sbjct: 558 QSFPFDKIKIDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAHIEFLRREG 617

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           C  +Q      P    SI  L+ + F
Sbjct: 618 CLQVQGFFFGRPGPLTSIANLVDDTF 643


>gi|213971401|ref|ZP_03399515.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|213923844|gb|EEB57425.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 756

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 293/696 (42%), Gaps = 33/696 (4%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +  +     A  F        V    A  +           +       +  ++L   A
Sbjct: 21  LVALAYGVACAACFATLDIADRVIHVDATTSRRVWKALGALCLAGGVWAMHFISMLAFQA 80

Query: 344 -------WILIFIWFIGLWMAITKRLDNDIIQPALVG--GLVLIVILIGFTVIQHVLATG 394
                    +  +  + + +     +    I    +    +  +V+ IG + + ++  + 
Sbjct: 81  PLKISYDLTITLVSLLIVLITALGAMKALTIPELTLKRCLISSVVMGIGISTMHYLGMSA 140

Query: 395 YFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
             S        R  +L  V+     +    + R     +     +       + G     
Sbjct: 141 MRSAATQYYEPRMFALSIVVAVLSSIALLTLSRHLRQYSGMFHQMFRYGVSLLLG---AG 197

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------MSN 504
           L  +H+      R ++  ++ +         +  +  A      +   I        +  
Sbjct: 198 LLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAITLLIIAGSISAAMADKKLQG 257

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T    
Sbjct: 258 KENDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLLE-HTHSKG 313

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S 
Sbjct: 314 MLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CILLSI 372

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +   +  PI L  R + +T SIG A +     T  E+LK+A+LA+Y +
Sbjct: 373 PDYEEARHLAHRVMHKMKEPIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQS 432

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEAL 741
           K  G N V  F  +      + +  +  L     E   L + Y PI+ +    +  LEAL
Sbjct: 433 KGNGRNRVNFFSPALKTKASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKLEAL 492

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G ++   F+ IAE   +I  ++ ++L R  RD+ + R++     + I +N +
Sbjct: 493 VRWHHPQHGLLAPVRFIGIAEANGLIAELDNWVLRRACRDLATLRNEGLEQ-LIITVNCS 551

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL++D
Sbjct: 552 ALTLGRDELVEEVEQALADANAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSID 611

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +     + + + I+++II MA  +   ++ + + 
Sbjct: 612 DFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPDSPQDMEIVQAIIVMAHTLHLKVVTEGVE 671

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L + G DY+Q    + P     IL L K+
Sbjct: 672 TPAQLEFLNQFGSDYVQGYLFSRPQPLERILPLAKQ 707


>gi|330820150|ref|YP_004349012.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327372145|gb|AEA63500.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 695

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 116/430 (26%), Positives = 208/430 (48%), Gaps = 7/430 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LTG+PNR +   R+   +D +         V+ +D+D +K IND LG +VGD V
Sbjct: 258 LATLDTLTGLPNRGTLNARMVEAIDRARRRQTG-FAVLFMDLDGFKAINDSLGHSVGDQV 316

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           LVS  +R+   ++  D +ARL G+ F +++    +       A  + +         +  
Sbjct: 317 LVSFAQRLRGCVRAADTVARLGGDEFVVLVEPLVSPQDARLVAEKVLEHTRDGAWSADTP 376

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKE 709
           + VT SIG A +     T   +LK+A+ AMY AK  G      F   ++      + I++
Sbjct: 377 LPVTPSIGIALYPRDGETVDTLLKHADAAMYEAKRGGRGTYRFFEVGMNDAALRTLQIQQ 436

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+ N    L + P  R   + + G EALI+  HPK G ++  +F+ IAE    I  
Sbjct: 437 ALHEALANGYFSLHFQPKFRGDTQALTGAEALIRLQHPKLGALAPLDFIPIAERSGQIVP 496

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++    R I +WR+    P + + +N++++ L   EL   M  ++     +P +I 
Sbjct: 497 IGYWVVRETCRQIRAWREAGL-PNMKVAVNLSTRQLAQPELAGAMLEIVEAQQVAPRQII 555

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E++ M + ER+ + +   ++ G  + +DDFGT  S L+YL       +K +    +
Sbjct: 556 FEITETMAMQDAERTIVAIRDFQQAGFEIAIDDFGTGYSSLAYLQRFRVKQLKIDRFFTS 615

Query: 890 GST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           G     ++  AI+ +II +A ++   ++A+ +       +L  + CD +Q   +  PL  
Sbjct: 616 GLDRHGKEGAAIVSAIIALAHSLGMDVVAEGVETATQRDKLNALMCDEMQGFLLGQPLTA 675

Query: 947 NSILKLLKER 956
            +  +L++ER
Sbjct: 676 EAFEQLIRER 685


>gi|154252320|ref|YP_001413144.1| diguanylate cyclase/phosphodiesterase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156270|gb|ABS63487.1| diguanylate cyclase/phosphodiesterase [Parvibaculum lavamentivorans
           DS-1]
          Length = 721

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 222/459 (48%), Gaps = 7/459 (1%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           ++  + +I       +D  + K+  E  +   A  D LT + NR  F  RL   +  +  
Sbjct: 235 VAGPDDEIGIVARALSDSFQAKRDGEDRLERLAATDGLTELGNRSFFKSRLGDEISRAER 294

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              +   VM++++D +K IND LG   GD VL      +    +  D++AR+ G+ FG+I
Sbjct: 295 HGGV-VGVMILNLDNFKDINDTLGHDAGDQVLRRTADILKGCRRGEDVVARIGGDEFGVI 353

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +    N+  +   A  + ++++ P  L  +E+T  A +G   +      +  ++KNA+LA
Sbjct: 354 VTDIKNADDVLQLASRLVRAVSAPFRLGTQELTQGACVGLTLYPQDGRDADVLVKNADLA 413

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +  AKH G      +R        +R  I+ DL +A+  +EL L Y P I +    + G 
Sbjct: 414 LSRAKHEGSGACVLYRHELHLRAIERNTIERDLRVAMARNELKLFYQPKIDMATGRVTGA 473

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W H + G IS ++F+ +AE   +I  +  ++L+   R    W++   +P I + +
Sbjct: 474 EALIRWRHEERGFISPAQFIPVAERTGLIVPLTKWVLDEACRQNREWQE-LGLPKIGVAV 532

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++ DL   +L + + + + +   SP  ++L  +ES+VM + +     L RLR +G+ +
Sbjct: 533 NVSAVDLKRTDLTDTIASTLIRRGLSPQYLELEVTESMVMQDVDVVIGTLRRLRGLGLGI 592

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S L+YL   P   +K + + ++   +      I + II +A  +   ++A+
Sbjct: 593 GIDDFGTGYSSLAYLKRFPVKRLKIDRTFVSDIADGRDGHVIPKVIIDLAHALGVMVVAE 652

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +        L  +GCD +Q      P+        L+ 
Sbjct: 653 GVESADQYDMLRDLGCDEVQGYFAGRPMPAAEFEVFLRN 691


>gi|319787132|ref|YP_004146607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465644|gb|ADV27376.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 937

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 131/576 (22%), Positives = 244/576 (42%), Gaps = 12/576 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               Q V A       +    E              + +    RV  T +   I GL  G
Sbjct: 355 LGQFQDVTAQRTADALLRWRTELLDRVSALGHIGGCEIEPSTRRVQWTEECYRIHGLPPG 414

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +   + + L     + R+ F   L           + E        Q  W+ + +    
Sbjct: 415 PL--TLDDALALYTRDSREAFEAALSRLAEGGPAE-RLELCFYRPGGQRVWVQVTLELDR 471

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G   R++ +  DI+ ++++ E I   +  D LTG+PNR     ++   +  +    +
Sbjct: 472 -REGMAGRFVALFRDISRERETSERIELLSHYDLLTGLPNRFLLRVQVEEAIADALASGD 530

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++++D+D +K IND  G A GD +L ++  R+   L   D+  RL G+ F ++L +
Sbjct: 531 ASLALLLLDLDGFKNINDTFGHAAGDAMLKAVAGRLHMALAQGDLFGRLGGDEFMVMLRA 590

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +    + A     +  +++ P+      +   AS+G +   +      E+L+ A  A+  
Sbjct: 591 DAAQAEAAGL--KLINALSEPLPFGGELLKAGASVGVSVLGADGTAFDELLRAAHSALRV 648

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           A+ RG N ++       R  R  ++ +  L  A+E  E  LVY P I + D    G+EAL
Sbjct: 649 ARERGRNTLQMHDAEIHRQTRRRLEIEHTLRGALEREEFSLVYQPQISITDRHAPGIEAL 708

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W  P  G     EF+ IAE+   I  +  +++    R  ++W          + +N++
Sbjct: 709 VRWHRP-GGTCHPGEFIPIAEQSGEIVRLGEWVIAEACRQAVAWHAAGLDFG-RVAVNVS 766

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L D    E + AL  +  + P+R++L  +ES ++ + E  R       + GI L +D
Sbjct: 767 GVQLRDRGFAERVVALCQRAGWPPARLELELTESALILDSESLRHCFKVFERHGIQLAVD 826

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL   P   +K + S ++G      A  + ++II +   +   ++A+ + 
Sbjct: 827 DFGTGFSNLHYLNRFPVQRLKIDRSFVSGMLHDANAGGVTQAIIHLGHALGMRVVAEGVE 886

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + ++L   GCD +Q      PL    + + L++
Sbjct: 887 TMQEQEQLRLWGCDEVQGYVHTRPLPPRELAQWLRQ 922



 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNF 464
           R  +A+  +G  +WDWDI  +R+  +     +LG  +       + + +  +H  D +  
Sbjct: 119 RWQVALDSAGHGLWDWDIGANRIFRSETWRAMLGFTAEDAPDSSLESAMAMVHPEDVERV 178

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
           R  L + +  R      E R+R  +  + W+    R +  +++G  LR IG    I EQK
Sbjct: 179 REALRAHLDGRTDAYTCEHRLRHCNGSWRWVRDSGRIVAWSADGRPLRMIGTHTAIDEQK 238

Query: 524 KSLEGILCN 532
           +  E +   
Sbjct: 239 QLEERLRGQ 247



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 20/180 (11%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L +I         + +       Q +  + +R       +G   W W    D      + 
Sbjct: 225 LRMIGTHTAIDEQKQLEERLRGQQALLEEIQRL------AGITSWSWTPGVDVGWWPREF 278

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +LG          R WL  +        R             +++E  +  A  Q   
Sbjct: 279 YRLLGHPPRD-RDSARAWLRRLPREAASALRRAWQRMRR-DGMPVRFELELSDAQGQPLH 336

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +    RP  ++ G I R +G   D+T Q+ +   +              R   LDR++ +
Sbjct: 337 LQAWARPQLDAAGHIERVLGQFQDVTAQRTADALLRW------------RTELLDRVSAL 384


>gi|90414235|ref|ZP_01222215.1| hypothetical sensory box/GGDEF family protein [Photobacterium
            profundum 3TCK]
 gi|90324682|gb|EAS41223.1| hypothetical sensory box/GGDEF family protein [Photobacterium
            profundum 3TCK]
          Length = 1049

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 112/579 (19%), Positives = 224/579 (38%), Gaps = 15/579 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + V +       +        L       I+   D      +     A +LG    
Sbjct: 473  LIEARDVTSRHQMEDKLREREVSYRLLYEQQPVILLAIDSQARIQSVNQFAADLLGYKKR 532

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             M G           +D    + I +S +   +   + + R + A+ +  W+   IR   
Sbjct: 533  DMLGHKVTDFYL--DDDVLPQQFISNSRLNDDQIVWRRQVRYKCAEGKSVWVRETIRSTQ 590

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +     L+ + +  DIT  ++  E +   A  D LTG+ NR  F  +L  +L  +  +D 
Sbjct: 591  SK----LQLLLVGEDITSTRELEEKLEYQACHDYLTGLLNRNYFETQLENVLVEAREND- 645

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +R  +  ID+D++K IND  G   GD+ L  +   + ++      L+RL G+ F IIL  
Sbjct: 646  IRHAMFYIDLDQFKVINDTAGHEAGDEALRQVALLLQDITPEHATLSRLGGDEFAIILRH 705

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  +      +               + + S+G      +  +  ++   A+ A Y 
Sbjct: 706  CTQCEAVTFGNEILHLLEGAEFFWQNTRFSFSCSLGIRLIDETAGSPQQVHAQADTACYA 765

Query: 684  AKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGL 738
            AK  G N +  +        R  ++ +    +  A+      L    I  +         
Sbjct: 766  AKDEGRNRLHLYHPDDEELKRRELEMEYVNHIHKALAEQRFELHAQQIAPVASGSTKQHY 825

Query: 739  EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            E L++  +     +S   FM  AE   +   I+ ++++ +   + + ++      +   I
Sbjct: 826  EILVRMRNSDGSMVSPGLFMPAAERYNIAHLIDRYVVKGVIEWLQANKEAVEKLEL-CSI 884

Query: 799  NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            N++ + + + +    +   I  +   PS++ L  +E+  +GN   +  L  +L+ +G  +
Sbjct: 885  NLSGQSMGNRDFVGFLIEQIRDSGLPPSKLCLEITETAAIGNMSEAIQLFTQLKNLGCLI 944

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             LDDFG+  S   YL  +P D +K +G  +    E     A++++I  +AK +    +A+
Sbjct: 945  ALDDFGSGLSSFGYLKRMPVDIIKIDGMFVRDIAEDEMDFAMVKAINELAKKMGKQTVAE 1004

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  E  +  L  +G DY Q      P     ++  L +
Sbjct: 1005 FVENEAILMRLQSLGVDYAQGYLFGKPKPLAELVAELSQ 1043



 Score = 40.3 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 58/409 (14%), Positives = 134/409 (32%), Gaps = 47/409 (11%)

Query: 344 WILIFI--WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
           W L  +  + + +   IT     +    AL   + L+ ++I   V+  +       Q + 
Sbjct: 306 WGLTVVDQYALLINKPITWYEYYNKELKALSISVALMGVVIVLLVL-MIRQLRKSEQQLQ 364

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                       S   +   D     ++    +  +LG        P+  W    H   +
Sbjct: 365 QSQALFEGVFDQSFQYIGILDSSGVLISGNLALQNLLGHKIIKYDRPLWRW----HCWQQ 420

Query: 462 DNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +    +  +F+  ++G+L ++E  V++ D+    + I ++ M  + G+  + +  A D+T
Sbjct: 421 ETAVKLNQTFISAQQGQLLRFEAPVQSIDDGIRVLDISVKNMPTAQGESEQVLIEARDVT 480

Query: 521 EQKKSLEGILCN--AFQDNLTGIPNRQSFLDR----LTTILDLSATDDNLRPTVMVIDID 574
            + +  + +     ++          +   ++    L  I   +      +      D+ 
Sbjct: 481 SRHQMEDKLREREVSY----------RLLYEQQPVILLAIDSQARIQSVNQFAA---DLL 527

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            YKK  D+LG  V D  L      + +        +RL+ ++                  
Sbjct: 528 GYKK-RDMLGHKVTDFYLDD--DVLPQQFISN---SRLNDDQIVW------------RRQ 569

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           +  + +    + + E   +  + +          ++ E+ +  E    H    G  +   
Sbjct: 570 VRYKCAEGKSVWVRETIRSTQSKLQLLLVGEDITSTRELEEKLEYQACHDYLTGLLNRNY 629

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           F            + D+  A+    + L    +I        G EAL Q
Sbjct: 630 FETQLENVLVEARENDIRHAM--FYIDLDQFKVINDTAGHEAGDEALRQ 676


>gi|225389177|ref|ZP_03758901.1| hypothetical protein CLOSTASPAR_02923 [Clostridium asparagiforme
           DSM 15981]
 gi|225044752|gb|EEG54998.1| hypothetical protein CLOSTASPAR_02923 [Clostridium asparagiforme
           DSM 15981]
          Length = 890

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 243/556 (43%), Gaps = 23/556 (4%)

Query: 403 DGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           D +    A+  G+ D ++  ++       +P +    GL    +      W   IH +D 
Sbjct: 346 DKDHLFDALSAGTDDYLFIGNLKNGSFRYSPHMVEEFGLPGEVVENAAAFWGSIIHPDDE 405

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             F          R      E+R R     + W+  R R   + NG+   + G+  ++ +
Sbjct: 406 LYFLESNQEIADGREEYHNIEYRARNVRGSWIWLRCRGRMTRDENGEPEMFAGMITNLGK 465

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +           D++TG+ NR  F   +   +     +      +M++D+D +K IND
Sbjct: 466 HNQI----------DHMTGLYNRFEFEGNIKKYMMDERVE---SLGIMILDMDAFKNIND 512

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           +   + GD+VL    R+I  +L     + RL G+ FGII++   +  + +D    ++   
Sbjct: 513 LYDRSFGDEVLRLTGRKIAAVLPENAGIYRLDGDEFGIIVLG-GDEEQCSDLYNRIQYQF 571

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
                   R+   T S G A +        E++K A  ++ H+K  G N    F  S   
Sbjct: 572 TRQQEYGGRKFFCTVSAGLAFYPKDADNYLELIKYANYSLEHSKMLGKNRSTVFSRSILW 631

Query: 700 FRSDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +  R+ + E L  +++       + Y P +R     + G EAL +W   ++G++S  EF
Sbjct: 632 EKERRLKMAELLRESIDQGFVGFSVCYQPQVRAGSGRLYGAEALARWHCSEFGDVSPVEF 691

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  +I  +  ++    AR    WR  A  P   + +N++  +L++ ++   +   
Sbjct: 692 IPILEQTGLIGRLGEWVFRSAARQCSLWRRFA--PDFMVSVNLSYVELMERDVFPAVMGA 749

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P+ + L  +ES ++   ++   ++GR R+ G+ + +DDFGT  S L+ L  IP
Sbjct: 750 LEEFGLPPANVTLELTESCMVKEDKQVNKIMGRFREAGLKVAMDDFGTGYSSLNSLKNIP 809

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK + S +TG TE+     ++RS+  + + ++  +  + +  E +   +  MG + I
Sbjct: 810 ADVVKIDRSFVTGITEEGYNATLIRSVAQLCRQVDMRVCVEGVETEEEHSAVRGMGVELI 869

Query: 936 QDSHVASPLGFNSILK 951
           Q  +   P+      +
Sbjct: 870 QGYYFGRPMLPELFEQ 885



 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 120/321 (37%), Gaps = 43/321 (13%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDR-VTTTPDIATILG 439
           G              +    + +R  L  A+ G    +   D V +R V    ++  I G
Sbjct: 25  GIARTASHALKRAGDERNMQELDRAFLLAALDGLNTNICITDTVTNRIVYANENMKRIFG 84

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG--RLQYEFRVRAADNQ------ 491
           LA                       R   +       G        R++A   +      
Sbjct: 85  LAEPE-------------------GRICWEVLQDGMDGLCPFCRIRRLQAMGGEQSCVWD 125

Query: 492 -----FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
                  W       +    G    Y+  + D+TE +K  E     A  D LT + NR++
Sbjct: 126 EMNTLTGWTYKNFDCLIRWEGR-DYYVQNSIDVTEYRKLTEE----AGLDELTQMMNRRA 180

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               + T L  +A +   +  V+++DI++ K+IND+ G + GD +L  ++  +   L+  
Sbjct: 181 GKAMMETALK-AAREGKRQMAVVLLDINELKRINDLYGHSEGDRLLQYVSAVLQPRLRTG 239

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA-SWTS 665
           D++ RLSG+ F +IL  E +        +  +K++A            + S G A ++  
Sbjct: 240 DLMFRLSGDEFVLILSGE-DKNSAVRRIVQAQKAMADQREQNGIFYEASFSFGVAEAYPE 298

Query: 666 SKITSSEMLKNAELAMYHAKH 686
           ++ T  E++  A+  MY  K 
Sbjct: 299 NRFTVDELISQADRIMYLNKR 319


>gi|296160574|ref|ZP_06843389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295889100|gb|EFG68903.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 569

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/556 (21%), Positives = 244/556 (43%), Gaps = 17/556 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   ++         +       + G A+  + G  R +       +    R  L 
Sbjct: 15  ALASAPCGMFICCADGTFDSINAAFEKLTGFAAEELIGR-RTFESLFDPAELVRRRAELP 73

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR-------YIGIANDITEQ 522
             +     R + E+     +     +++ + P+                Y+G+A D+T  
Sbjct: 74  P-LEMVTSRYEGEWSFLRRNGTPIRVVLALAPLVTGPAYAGGAAAGPACYVGMAFDMTRY 132

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +S   +   A  D +T +PN+  F +RL   +     + +   TV++ ++D  +K+ D 
Sbjct: 133 AQSEARLWYVAHHDGVTRLPNQTLFTERLELTIARCQRNGSG-FTVLIAELDHLRKLRDA 191

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG+   + VL  +  R+  L      +A + G +F +++     +             IA
Sbjct: 192 LGLHAAELVLQIVGERLRGLFPNDGTIASIGGTQFALLVNETGAAADAFAAEA--LGRIA 249

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSF 700
             I+     + +TASIG  ++ +    +  +++ A +A+  A    GN V  F       
Sbjct: 250 EAIDYAGTALNITASIGIVAYPADGGDAPTLMRRAGVALSAASAVNGNAVRRFSAALEGQ 309

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + R  ++  L  A+E  +L+LVY P + L +  I  +E L++W+HP+ G IS  EF+ +
Sbjct: 310 AARRFELETMLREAIERQQLHLVYQPQVTLSNGRIAQVETLLRWNHPQRGLISPVEFVPV 369

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ I  +++    RD           P F  +N++ +      L E ++  + +
Sbjct: 370 AEEAGLIEQIGEWVIRTACRDAGKLLRLTGTLPRF-AVNVSPQQFQRQNLFETIREALDE 428

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               PS +++  +E V++G+ E++   L  LR +G+ + +DDFGT  S L+YL   P + 
Sbjct: 429 AALDPSYLEVEITEGVLLGDTEQALQTLFALRDLGVEVAVDDFGTGYSSLAYLTRFPLNR 488

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   +      A++ +II MA  ++  + A+ +       +L  +GCD  Q  
Sbjct: 489 LKIDRSFVMRMSSDPQCEALVGAIIAMAHALKLRVTAEGVETAEQAAQLEALGCDEAQGF 548

Query: 939 HVASPLGFNSILKLLK 954
             + P+   ++  LL+
Sbjct: 549 WFSRPITVGALRNLLR 564


>gi|149378288|ref|ZP_01895998.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149357422|gb|EDM45934.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 633

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 224/448 (50%), Gaps = 8/448 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + I +  T  +++ + +   +  D LTG+P+R +F++ L   +  ++ D N+  +++  
Sbjct: 178 LVAIGDSQTRHREAEDRVTRLSRYDQLTGLPSRDTFMELLQADIADASED-NMILSLICC 236

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKI 630
            ID +K IN+  G   GD +L ++  R+ + L      +ARL  ++F ++     +  + 
Sbjct: 237 GIDDFKSINEQCGFRTGDMILQTVADRLTQKLGGTRFTIARLGSDQFVVVEKGLRDGFQA 296

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           AD A  +  S++ P+   ++ IT+TA++G A +      +  +L+NAE  M  AK  G N
Sbjct: 297 ADTADRILASLSRPMTFDDQTITMTATLGIALFPGDASKADRLLQNAEQTMALAKEGGHN 356

Query: 691 HVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + + +   V     +R  +++DL +A+ + + +LVY P I L    I+G EALI+W+HP+
Sbjct: 357 YFQFYVASVDQEIRERKQLEKDLSIALHSQQFHLVYQPQINLETHRIIGAEALIRWEHPE 416

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +   +F+ +AE    I  I  ++L++       W       P+ I IN+++  L  N
Sbjct: 417 KGLVPPDDFIPVAEMNGSIVEIGQWVLDQACWQAARWASDG--MPLRIAINLSAVQLRQN 474

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            + + +   + +      R++L  +E+  M N E +   L RL K GIS+ +DDFGT  S
Sbjct: 475 NIVDEILDTLKRHNIPAGRLELEVTETSFMTNLEDAVKKLKRLHKAGISIAVDDFGTGYS 534

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL  +P   +K +   +      E+   I  +II + K++  T++A+ +        
Sbjct: 535 SLTYLKRMPVQHLKIDKQFIRDLLVNEEDTRIANTIIDLGKSLNLTVVAEGVETAEQEYY 594

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L + GC   Q  + + PL  +     + 
Sbjct: 595 LAQRGCKLAQGYYFSKPLKPHDFEVFVA 622


>gi|148260550|ref|YP_001234677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidiphilium cryptum JF-5]
 gi|146402231|gb|ABQ30758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidiphilium cryptum JF-5]
          Length = 947

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 130/575 (22%), Positives = 245/575 (42%), Gaps = 24/575 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  ++ +       +   +        +  SGD V  +D             T+LGL   
Sbjct: 388 YGTLEDITDRHAAEEARKASEALALRVLEASGDAVIVFDAAGRARFANARAMTMLGLPDD 447

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++   + +     H   R+    +  +      G  +  +          W+      + 
Sbjct: 448 AVGCNVASLFAEAHC--RELRMAVSRAMRDGAGGHFELFWP-----PTDLWLEAS---LF 497

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              GDI  +     DI+E++ + + +   A  D +TG  NR +   RL+  L+    D  
Sbjct: 498 ADGGDISLF---LRDISEKRLAQQQLRYAASFDFMTGAANRGTLFSRLSAQLER--QDAG 552

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D +K+IND  G   GD VL     R+   L+  D+LAR  G+ F ++   
Sbjct: 553 DLTALLCLDLDYFKEINDQHGHPAGDAVLRQFVSRLRLCLRSQDLLARCGGDEFVVMQTG 612

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  +   +  P ++    +  + S+G A  +     +  +   A+ A+Y 
Sbjct: 613 VGGPADAIALAERILAIMRAPFDVDGISLPSSVSVGIAVSSLGMTDADALYNQADRALYV 672

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +       F     R+D     ++ +L  A+   E  L + PI++L  + IVG+EAL
Sbjct: 673 AKSKARGSYRLFHPDMQRADEAGRRLRAELSGALTRGEFALAFQPIVQLASQRIVGVEAL 732

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G I  +EF+ +AEE   I ++  ++L    +    W +      + I +N++
Sbjct: 733 LRWHHPERGLILPAEFIPVAEESGQIASLGAWVLGTACKAARHWPE-----DVKISVNVS 787

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +     ++   +   ++      SR+KL  +ESV++     S  +L  LR+ G+ L LD
Sbjct: 788 PRQFELGDIRLVVGDALAAAGLPASRLKLEVTESVLLSQNASSIHVLQDLREQGVILVLD 847

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL     D VK + S ++       R  I  +I+ M   +   + A+ + 
Sbjct: 848 DFGTGYSSLSYLDTFKVDIVKVDKSFISRIRAPGDRQPIFEAIMGMTAALNLPVTAEGVE 907

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             + +  +TR+GC++ Q  + A P+    + + L+
Sbjct: 908 TRVQLDYVTRLGCEWAQGYYFARPVSEYELRRRLQ 942



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 4/192 (2%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
            A     A            +     + + +     V G    V  +  T  Q +     
Sbjct: 215 MATFREAARSGTAATLEYRVILPDGAVHDVLTHAEPVVGADGTVSQLRGTT-QDITPYRR 273

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               +    +     V     I W        +   P    + G++          W+  
Sbjct: 274 IEAALRESEDHYRHMVELHPQIPWTAGPDGAILEVGPQWFALTGMSRDE--TMPFGWVSA 331

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H +DRD         +      +  E+R+R +D  + WM  R       +G ILR+ G 
Sbjct: 332 LHPDDRDPTLAAWRRNIE-SGAPIDVEYRLRLSDGAYGWMRARAAARRGEDGRILRWYGT 390

Query: 516 ANDITEQKKSLE 527
             DIT++  + E
Sbjct: 391 LEDITDRHAAEE 402



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              E  + A   +    W WD+ R R+  + +   +LGL  G+           IH +D 
Sbjct: 152 QRTEELASAHRLARVGAWRWDLARRRIWLSVETTWLLGLEGGAAEIDYDQMRRAIHPDDY 211

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D                   E+RV   D   H ++    P+  ++G + +  G   DIT 
Sbjct: 212 DAAMATFREAARSGTAA-TLEYRVILPDGAVHDVLTHAEPVVGADGTVSQLRGTTQDITP 270

Query: 522 QKK 524
            ++
Sbjct: 271 YRR 273



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           +L + G G ++WD D V   +          +          +      +H +DR     
Sbjct: 14  ALVLGGRGVVLWDLDPVAGLIRHYHGQAREGVDCPPAE---TVEQVCARVHPDDRARVGA 70

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR-PMSNSNGDILRYIGIANDI 519
            L    G      +  +R R A   +   + R R  + ++ G  LR +GI  D+
Sbjct: 71  ALRCDDGQAAPEFEIGYRARDAAGGWIRQVARGRVVVRDAAGRPLRVVGITIDL 124


>gi|87120083|ref|ZP_01075979.1| sensory box/GGDEF/EAL domain protein [Marinomonas sp. MED121]
 gi|86164785|gb|EAQ66054.1| sensory box/GGDEF/EAL domain protein [Marinomonas sp. MED121]
          Length = 762

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 122/486 (25%), Positives = 225/486 (46%), Gaps = 30/486 (6%)

Query: 501 PMSNSNGDILRYIGIAND----------------------ITEQKKSLEGILCNAFQDNL 538
           P+ N+ G +L   G+  D                      I +++++L+ I   A+ D L
Sbjct: 280 PVKNAAGKVLGAFGMYYDYPGLPNEEELNDLVSAVRLVSIIMDREQNLKRIKELAYTDEL 339

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ +R      L   +  +    N   T++ +D+D +K IND LG   GD +L  +  R
Sbjct: 340 TGLSSRAQLYLSLEKRIKSAKES-NEHFTLIYLDLDNFKNINDSLGHDAGDTLLQMIATR 398

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLEREITVTAS 657
           +  +      +ARL G+ F IIL ++  +   I  FA A  + I+ P+ L  R    T S
Sbjct: 399 LINITSHTHTIARLGGDEFCIILDTQEQAKAGIIKFAHACLEGISQPVFLSSRRFIPTCS 458

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
           +G A + +       +LK A+ A+Y AK RG N    ++V           +++ L  A+
Sbjct: 459 LGIAKYPTDGEDLPSLLKAADTALYAAKDRGKNVYAFYQVEYTQQAEYSFKVEQALREAI 518

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E   L L Y     +   +I+G+EAL +W HP+ G++  +EF+ IAE + MI+ +  ++L
Sbjct: 519 ETETLSLEYQAQTSVETGKILGVEALARWFHPQLGHVPPTEFIPIAERIGMIRPLTQWVL 578

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   +  + WR    +  + + +NI+    L+++  + +   I  T    S++ L  +ES
Sbjct: 579 KTACQQAVDWRRS-GVQDLRMAVNISPSHFLESDFDQVIIETIKSTGIDVSKLTLEVTES 637

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            V  N      +  +L+ +G+ + +DDFGT  S  + L ++  D +K +   +      E
Sbjct: 638 AVQTNKANL-SMFKKLKALGVMIAIDDFGTGYSSFASLKHLSIDVLKIDKYFVDDMVNDE 696

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K   +++++I M + +   I+ + +  +     L + G + IQ    + P     I  LL
Sbjct: 697 KSTRLIKAMIEMGQKLGYEIVLEGVENDAQFAMLKQFGVNIIQGFLFSKPASAKEIDALL 756

Query: 954 KERFPL 959
             +  L
Sbjct: 757 PRKVAL 762



 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQG-----IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           ++   T ++H LA    ++      +    ER +LA+ G+ D +WDWD+  D+V  +P  
Sbjct: 11  LIAEITQLRHELAHVNLTKEEQSIELLKSEERFTLAMRGASDGLWDWDLSTDKVYYSPRW 70

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            ++LG     +   +  W   +H  D+D   T +  ++  +    + E R+R  +  + +
Sbjct: 71  KSMLGYEEHELDRSLNTWASMVHTKDKDFVLTRVQDYLSNKADAFEVEMRMRHKNGSYLY 130

Query: 495 MIIRIRPMSNS-NGDILRYIGIANDITEQKKSL 526
           +  R   + +      +R IG   DIT++KK+ 
Sbjct: 131 IRSRAFKVLDETENTPIRLIGTHVDITKRKKTE 163


>gi|294624907|ref|ZP_06703562.1| c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600786|gb|EFF44868.1| c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 757

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 224/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 319 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 377

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 378 DSQGHAAGDGLLRDIALRVNDQVTATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 436

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 437 IASPLPVGHMTVHPSASIGVAMFPEDGQDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 496

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A++ ++L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 497 RMAQERVALEAELRQAIDRNQLQLHYQPQMHSAAPHTLYGVEALLRWNHPQLGAVSPARF 556

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 557 LPVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLPDLLRL 615

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++    PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 616 IAEMGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 675

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 676 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 735

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 736 QGYLFSRPLPAPALEAWLGAQ 756



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            Q         + A+ GS   +   D+    +        + G     + G    + L  
Sbjct: 35  EQPEQRRARLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVLTR 94

Query: 456 IHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              +  +    R   D+    R   L Y       D    W+ +   P+ ++N     Y+
Sbjct: 95  AQSDQSEVARVRDRADALQHTRADLLVY-----RKDGTPLWISLNFNPIYDANHAPSHYV 149

Query: 514 GIANDITEQKKSL 526
            +  DIT+ K   
Sbjct: 150 AVLTDITDTKMHE 162


>gi|323529581|ref|YP_004231733.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1001]
 gi|323386583|gb|ADX58673.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1001]
          Length = 692

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 203/434 (46%), Gaps = 7/434 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I+  A  D LTG+PNR +  +R+   +  +A        ++ +D+D +K IND LG + 
Sbjct: 254 QIVRLATLDTLTGLPNRATLTERIERAI-HAARRQRSLFAILFMDLDGFKTINDSLGHSA 312

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL +  +R+   ++  D +ARL G+ F ++  +  + +  A  A  + + +      
Sbjct: 313 GDQVLAAFAQRLLICVRAGDTVARLGGDEFVVLSENLASRMDAAALAEGVLERMRRDTWA 372

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
             + + V  SIG A +     +   +LK+A+ AMY AK  G +    F        +  +
Sbjct: 373 DSQPLQVMPSIGIALFPEDGDSVDTLLKHADAAMYEAKRAGRSTYRFFERRMNEAATRTL 432

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I+  L  A+      L + P      E + G EALI+  HP+ G ++  EF+ IAE   
Sbjct: 433 QIQNALREALAERHFTLHFQPKFDGKSETLAGAEALIRLHHPQLGTLAPLEFIPIAERSG 492

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  ++L    R I  W  Q   PPI + IN++ + LL  +L   M  +++      
Sbjct: 493 QIVQIGYWVLRETCRQIRRWIAQGL-PPIKVAINLSPRQLLQADLVPTMLDIVNAEGVRC 551

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +I    +E+V M +  R+  +L   +  G  + +DDFGT  S L+YL       +K + 
Sbjct: 552 EQIMFEITETVAMQDAARTIEMLREFQASGFEIAIDDFGTGYSSLAYLQRFRVKQLKIDR 611

Query: 886 SLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
               G     E+  AI+ +II +A ++E  ++A+ +  E  +  L  M CD +Q   +  
Sbjct: 612 FFTNGLDAHGEEGSAIVSAIIALAHSLEMDVVAEGVETESQLHMLKAMRCDEMQGFLLGK 671

Query: 943 PLGFNSILKLLKER 956
           PL   +   LL+ +
Sbjct: 672 PLTAEAFGDLLRGQ 685


>gi|94263473|ref|ZP_01287286.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93456203|gb|EAT06342.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 421

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 106/407 (26%), Positives = 188/407 (46%), Gaps = 10/407 (2%)

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           ++        V+ +D+D +K +ND  G  VGD +L     R+   ++  D ++R  G+ F
Sbjct: 5   ASARSGQHGAVLFLDLDNFKTLNDTRGHDVGDLLLTMAAERLQVAVRANDTISRQGGDEF 64

Query: 618 GIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            ++L + +     A       A  +R ++  P +L   E  +  SIG + +      + E
Sbjct: 65  MVLLNNLSPERHAAISQAGRVAEKIRAALDQPFDLDGYEHHIGVSIGLSLFLGHDTPADE 124

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           + K A+ AMY AKH G N V  F             +  DL  A+   +  L Y P    
Sbjct: 125 LFKRADAAMYQAKHAGRNQVRFFDPEMQAELEQASALVVDLRQAIWQGQFQLHYQPQTA- 183

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  I+G EAL++W HP+ G +S  +F+ +AEE  +I  I  ++LE     + +W D   
Sbjct: 184 NDGRIIGAEALLRWRHPERGPVSPMQFIPLAEESGLILPIGHWVLEEACGQLAAWADLPA 243

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++++     E    ++ +++ T   P  +KL  +ES+VM     +   +  
Sbjct: 244 AGNCKLAVNVSARQFRQPEFVAEIRRILAATGADPKLLKLELTESIVMTELADTVSKMHE 303

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR +GI  ++DDFGT  S L+ L  +P + +K + + +          AI+ +II M + 
Sbjct: 304 LRDLGIGFSMDDFGTGYSSLAQLKRLPLEQLKIDRAFVRDLGSDPHDDAIVETIIAMGRT 363

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  +IA+ +  +  +  L R GCD  Q    + P+       LL  
Sbjct: 364 LDIQVIAEGVETKEQLATLARYGCDAYQGYLFSRPVPAAQFAHLLTS 410


>gi|291571384|dbj|BAI93656.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 570

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 225/427 (52%), Gaps = 9/427 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +P R     ++  +   S      +  +  +D+ +++ IN+  G A+GD +L+S
Sbjct: 142 YDVLTDLPTRNLLHQKIQRL---SNQSKYTQIALFFLDLYRFRLINEGFGHAIGDQLLIS 198

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            T+R+ + L    ILAR+ G+ F +++ +  N  +    A  ++K++A P  L  +++  
Sbjct: 199 TTKRLKKCLHSQVILARVCGDEFAVMMPNIQNIDQAIAMANQLKKALAAPFYLNGQQVYT 258

Query: 655 TASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDL 711
           T SIG A    +    + ++L++A  AMY AK  G N  + +   + S    ++ ++ DL
Sbjct: 259 TISIGIAYSNQNPHLVAHDLLRDAHTAMYRAKALGNNRYQVYISTMKSQALQQLQLEADL 318

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++N E  L Y PII L   +I G EAL++W  P+ G +S  EF+ ++EE  +I  + 
Sbjct: 319 REAIKNQEFQLYYQPIIDLKTNQIAGFEALVRWISPQRGFVSPGEFIPVSEESGLIIPLG 378

Query: 772 LFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            ++L    R +  W  +    PP  + IN++++      L E +  ++++T    + IKL
Sbjct: 379 EWILLEGCRQLAIWHQKYCQNPPFMLSINLSTRQFSQVNLIECVDQILTETGVDRNCIKL 438

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +M + + +  LL +L+ +GI L++DDFGT  S LSYL   P DT+K + S +  
Sbjct: 439 EITESAIMDDVDEAIALLEQLKSLGIKLSMDDFGTGYSSLSYLHRFPIDTLKVDQSFVRR 498

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             + +    I+++II +  N+   I+A+ I  E +++ L  + C+Y Q    + PL   +
Sbjct: 499 MDDSQQNTEIVKTIIMLGHNLNMDIVAEGIEAEGNVQTLKNLNCEYGQGYFFSKPLPVTA 558

Query: 949 ILKLLKE 955
           +  LL  
Sbjct: 559 LEDLLNR 565


>gi|300919471|ref|ZP_07135971.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300413457|gb|EFJ96767.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 516

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/493 (22%), Positives = 231/493 (46%), Gaps = 11/493 (2%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +          + E  +     Q  ++       S S  + +  I    DITE++++ E 
Sbjct: 28  NRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQER 87

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D++TG+PNR +  + +   ++ +  +   +  V+ +D+D +KK+ND  G   G
Sbjct: 88  LRILANTDSITGLPNRNAMQELIDHAINQANNN---KVGVVYLDLDNFKKVNDAYGHLFG 144

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  ++  I   L+   +LAR  G+ F ++L S  +   +   A  +   + +P  + 
Sbjct: 145 DQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEAMASRILTRLRLPFRIG 203

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
             E+  + S+G +        S+ ++++A+ AMY AK  G      F   ++    + + 
Sbjct: 204 LIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLW 263

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G I   +F+  AEE  +
Sbjct: 264 LDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLDFISYAEESGL 322

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++  + R +  WRD+     + + +NI+++ L D  +   ++ ++ +  +   
Sbjct: 323 IVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTIFTALKQVLQELNFEYC 380

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S LS L   P D +K +  
Sbjct: 381 PIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQG 440

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +          +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P+
Sbjct: 441 FVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPM 500

Query: 945 GFNSILKLLKERF 957
              +  +  K   
Sbjct: 501 PAVAFERWYKRYL 513


>gi|292493409|ref|YP_003528848.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291582004|gb|ADE16461.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 906

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 114/546 (20%), Positives = 232/546 (42%), Gaps = 20/546 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDRDNFRTI 467
           +  +  I+   +     V        I G ++  + G   N L     I           
Sbjct: 357 LNTAQVIILTQNAAGRVVMLNRQGLVITGYSADEIEGRPFNELLAGDKISPE----VLQE 412

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L+     RR +++ +  ++  D     +      +   +      + + +D+TE++++ +
Sbjct: 413 LEELRLGRREQVRVDAGLQCRDGSQRTISWFHSRLLVRSPRDAVVLSVGHDVTEREQAEQ 472

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR+ F      IL  S    +    ++  D+D++K IND  G   
Sbjct: 473 QLAWLADHDPLTELFNRRRFQGEFEQILMASKRYKH-SGGLLYFDLDQFKYINDTSGHQA 531

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PIN 646
           GD +L  +  ++ ++++  D++ARL G+ F +++  E ++      A  +R  +      
Sbjct: 532 GDALLRMVADKLRQVVRASDVIARLGGDEFAVVIR-ECDADGAVQVARKVRAQLGTLEFP 590

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              R  +++ASIG A +     T  +++ NA+LAMY AK  G      F       +R+ 
Sbjct: 591 ARGRNHSISASIGIALFPLHGTTVHDLMANADLAMYQAKEEGRGGWHLFSSDERVRERMQ 650

Query: 707 ----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                KE +  A+      L + P++ +    I   E L++   P+   IS  +F+ +AE
Sbjct: 651 NRVYWKEQIEQALREDRFLLYFQPVLDICTNTIGHYEVLLRMRDPRGRIISPGQFIPVAE 710

Query: 763 ELCMIKAINLFMLERIA-RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +  +I +I+  +L++   +    W        + + IN++ + + D EL   ++ L+  T
Sbjct: 711 QSGLIHSIDHLVLQKAITKQARLWSQ---GYKLTLSINLSGRVVDDPELVPILEDLLRTT 767

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS +    +E+  + +   +  L+ +++  G    LDDFG   S   +L  +P D V
Sbjct: 768 GVDPSSLMFEVTETAAVADMMAAANLMHKIKAHGCQFALDDFGVGFSSFFHLKQLPVDYV 827

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G  +       +    ++++  +AK +    IA+ +     +  L   G DY Q  +
Sbjct: 828 KIDGMFVRQLVENHQDRVFVKALSEIAKGLGKKAIAEFVEDAEALILLREYGVDYAQGYY 887

Query: 940 VASPLG 945
           +  P  
Sbjct: 888 IGRPAP 893


>gi|115522209|ref|YP_779120.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115516156|gb|ABJ04140.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 563

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 222/497 (44%), Gaps = 18/497 (3%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D    +L       R RL+     +  D +         P+         ++  A D+T 
Sbjct: 73  DAAAALLRVNAEAGRTRLKVTREAKLPDGRTLGFET--LPL------PEGWLVSAADMTA 124

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
                      A  D+LT + NR  F +RL  +L       N    V+ +D+ ++K +N+
Sbjct: 125 TLARRAREAMQARTDDLTQLGNRLMFQERLQDVLADRGAATN-PAAVLAVDLGRFKALNE 183

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  +GD +L  + +RI   L   D++ARL  ++FGII I +         A  +   I
Sbjct: 184 SLGRKIGDALLCLVAKRIRSTLTGGDVVARLEADKFGIIQIGQPQPQSAEALASRLVDLI 243

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                L  + I ++  +G  +         E+LK+A+LA+  AK  G      F  +   
Sbjct: 244 GRAYLLDGQLINISGCVGVVTLGPDTSDCDEVLKSADLALSRAKSDGHGSYRFFEAAMDE 303

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL  A+   E  LVY P + L    + G EAL++W  P  G +S  +F+ 
Sbjct: 304 KMRSCRNLEIDLRRALSLREFSLVYQPQLNLKTRRVTGFEALLRWQCPTRGAVSPLDFIP 363

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I +I  ++L     +   W ++ N     + +N+++       L   + + ++
Sbjct: 364 LAEETGVITSIGEWVLRTACHEAARWPNECN-----VAVNVSAVQFASFSLVTTIMSALA 418

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P R++L  +ESV++     +  +L  LR +G+ + LDDFGT  S L YL   PFD
Sbjct: 419 ESGLDPRRLELEITESVMLDARGTALSVLQNLRSMGVRVALDDFGTGYSSLGYLRSFPFD 478

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + + G+       AI+R+I  + +++    +A+ +  E  +  +T  GC  +Q 
Sbjct: 479 KIKIDQTFVRGTANDPAGQAIVRAIAYLGQSLGMETVAEGVETEEQLARITADGCTDVQG 538

Query: 938 SHVASPLGFNSILKLLK 954
             ++ PL  + I   + 
Sbjct: 539 YLISRPLPPDQIAGFMT 555


>gi|295699148|ref|YP_003607041.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1002]
 gi|295438361|gb|ADG17530.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Burkholderia sp. CCGE1002]
          Length = 694

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 205/435 (47%), Gaps = 7/435 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I+  A  D LTG+PNR +  +R+   +  +         V+ +D+D +K IND LG + 
Sbjct: 254 QIVRLATLDALTGLPNRATLTERIERAISGARR-QRTSFAVLFMDLDGFKTINDSLGHSA 312

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL +  +R+ + ++  D +ARL G+ F ++     +    A  A  + + +      
Sbjct: 313 GDAVLSAFAQRLQQCVRSSDTVARLGGDEFVVLAEHLTSGDDAAALADGVLERMRQGTWS 372

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
            E+ + V  SIG A +     +   +L++A+ AMY AK  G      F  S     +  +
Sbjct: 373 DEQPLQVMPSIGIALYPRDGDSVETLLQHADAAMYEAKRAGRGTYRFFERSMNEAATRTL 432

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I++ L  A  N    LV+ P  +   + + G EALI+   P+ G ++ +EF+ +AE   
Sbjct: 433 QIQQVLHDAFANERFSLVFQPKFQRGGDALAGAEALIRLHDPELGTLTPAEFIPVAERSG 492

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  +++    R I  W +Q   P + + IN++ + LL  +L E +  ++     + 
Sbjct: 493 QIVQIGYWVVRETCRRIRGWIEQGL-PAMKVAINLSPRQLLQPDLVETILEIVRTEGVAC 551

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +I    +ESV M +  R+  ++   +  G  +++DDFGT  S L+YL       +K + 
Sbjct: 552 EQIMFEITESVAMQDAARTVDVIRAFQASGFDISIDDFGTGYSSLAYLQRFQVKQLKIDR 611

Query: 886 SLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
               G         AI+ +II +A ++E  ++A+ +  +  + +L  M CD +Q   +  
Sbjct: 612 FFTHGLDANGAAGSAIVSAIIALAHSLEMDVVAEGVETQSQLDKLRSMMCDEMQGYLLGK 671

Query: 943 PLGFNSILKLLKERF 957
           P+       +L+ R 
Sbjct: 672 PVSAEDFGAMLRSRM 686


>gi|288934500|ref|YP_003438559.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
 gi|288889209|gb|ADC57527.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
          Length = 636

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 219 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGC-AVVMLFDLDSFKDVNDTLGH 277

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  + L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 278 DAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALER-ANVIREKISQPY 336

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 337 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 395

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 396 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 455

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I  +  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 456 IGLINTLGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIGVLQQTGL 510

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR+ GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 511 DPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRLSYFPFDKIKI 570

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 571 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLTSLQALGCDLVQGYLIG 630

Query: 942 SPLGF 946
            P   
Sbjct: 631 KPSPL 635


>gi|67644042|ref|ZP_00442785.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|238525526|gb|EEP88954.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
          Length = 583

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/434 (28%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR + L  L   + L +     R  ++ ID+D +K +ND LG 
Sbjct: 126 EREMTQLAEFDLLTGLANRYATLRSLRNDVALPSNLS--RLAILFIDLDNFKTVNDTLGH 183

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     LAR+ G+ F +++  EN   +    A A+ +  A P 
Sbjct: 184 NAGDIVLQMTAARLSDAVANEGALARIGGDEFVVVVKGENVERRAERLAEAIVRMFAEPF 243

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           ++      + ASIG A  +    +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 244 DVRGSSFVLHASIGIALHSVENESEIDLLKKADLAMYSAKDAGKNCYQFYAPHLSHRADH 303

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++WDHP+ G IS++EF+ IAE 
Sbjct: 304 LMRWEQQLRVALSDGQLFLAYQPKIDLTYRCITGFEALVRWDHPEHGVISANEFISIAES 363

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++      +  WR++ +   + + +NI+       +L + +   +++T  
Sbjct: 364 TGLIVPIGDFVIRTACEQLARWRNEGHD-KLTLAVNISPVQFWRGDLIDTISRALAETGI 422

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +E+ +M  PE     +  L+++GI + LDDFGT  S LSYL     DT+K 
Sbjct: 423 EARRLELEITETAMMEYPELVSEKIVALKRLGIRVALDDFGTGYSSLSYLHRFAVDTLKV 482

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ SI+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 483 DRSFIQAIPADRSVCVMVSSIVHLARSLGLTVVVEGTETEEQIAWLAALGRIEAQGFLFS 542

Query: 942 SPLGFNSILKLLKE 955
            P+  + I  LL  
Sbjct: 543 RPVPSDGIAALLAR 556


>gi|220936300|ref|YP_002515199.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997610|gb|ACL74212.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 786

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 154/761 (20%), Positives = 306/761 (40%), Gaps = 50/761 (6%)

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288
           L +  +   F  +     +      R  ++ A   +    +  YLH   W  +       
Sbjct: 41  LFHERLAERFSLEAQEHRTRFDRHVRIHTQAAKMLAGSQMMLDYLHGEPWEGRDAQSVQY 100

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
            +     +   S   P V    A +  +   +       YH  +      LL P+ +++ 
Sbjct: 101 HVDPPGWMPAHSVLRPFVVPRYALLLDSEGRVREL----YHWDQTVPSPDLLTPSALVLA 156

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
           +     ++   +     +    ++ G  L+ IL+    I         SQ + +     +
Sbjct: 157 LSRGQSYLTRLEAGPYLLSSEPVMLGGELVAILMLAAPIDSGF--LRESQALATTPHTVA 214

Query: 409 LAVLGSGDIVWDWDIVR--DRVTTTP-------DIATILGLASGSMHGPIRNWLPYIHIN 459
           L   G+  I+   D     D +  +                 S  +     +++P   ++
Sbjct: 215 LLSEGADRILVSSDPNAVPDGIRLSELSDLYLTVGKGFFDYGSSDLVIRFASFIPLQEVS 274

Query: 460 DRDNFRTILDSFVGYR---RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           D    +  LD     R          F +       + +  R+R ++    +   ++ + 
Sbjct: 275 DLT--QAALDRAREQRIMITAAFGVTFMLL-----IYLLTRRVRALTQRVVEFSSHMAVK 327

Query: 517 NDITEQK------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            D T+ +                  +  E +   A  D LT +PNR+   DRL   L  S
Sbjct: 328 QDRTDSRDELDILEDRFKTLTSAIMRETEALEYQASHDPLTDLPNRKLLNDRLQNELLRS 387

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    +MV D+D +K+IND LG  VGD VL     R+ + ++  D +ARL G+ F 
Sbjct: 388 G-FTGAPLVLMVSDLDHFKEINDTLGHHVGDLVLQQAAERLYKTVRKADTVARLGGDEFS 446

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++         +   A  + +    P  +    + V  SIG A + +     + +++ A+
Sbjct: 447 MLFPDTTLEQGL-KIARQIGRVFESPFAVEGHNLNVGISIGIAEFPAHGDDVNILMQRAD 505

Query: 679 LAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           +AMY AK  G  + V      +    R+ +  DL  A+E   L   Y   + +    + G
Sbjct: 506 VAMYAAKQNGLTYAVYDPGKDTHHVSRLELLSDLRRAIETGSLECHYQCKLDIESGRVTG 565

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++WDHP  G I   E + +AE+  +I+ +   +L +  ++   WR+      + + 
Sbjct: 566 AEALLRWDHPDRGMIHPDELIPLAEKTGLIRPLTNLVLRKALQECARWRESGLD--LSVA 623

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++ L ++ L + ++  + +     S   L  +ES +M +P R++ +L  L  IG+ 
Sbjct: 624 VNLSAQCLREDSLLDTLRRCLDEFRLPASACVLELTESDMMADPLRAKEILMELDVIGVR 683

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           +++DDFGT  S L+YL  +P   +K + S +      E  + I+R+I+ +A N+   ++A
Sbjct: 684 ISVDDFGTGYSSLAYLKQLPISEIKVDRSFVREMLEDENDLVIVRAIVDLAHNLGIRVVA 743

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + ++    +  L R+ C+  Q   +  P+  + +L  L+  
Sbjct: 744 EGVHSREVLDMLARLKCNEAQGYFIRKPVPGDELLTWLQSE 784


>gi|301383588|ref|ZP_07232006.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059985|ref|ZP_07251526.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302132076|ref|ZP_07258066.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 763

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 153/696 (21%), Positives = 293/696 (42%), Gaps = 33/696 (4%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +  +     A  F        V    A  +           +       +  ++L   A
Sbjct: 28  LVALAYGVACAACFATLDIADRVIHVDATTSRRVWKALGALCLAGGVWAMHFISMLAFQA 87

Query: 344 -------WILIFIWFIGLWMAITKRLDNDIIQPALVG--GLVLIVILIGFTVIQHVLATG 394
                    +  +  + + +     +    I    +    +  +V+ IG + + ++  + 
Sbjct: 88  PLKISYDLTITLVSLLIVLITALGAMKALTIPELTLKRCLISSVVMGIGISTMHYLGMSA 147

Query: 395 YFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
             S        R  +L  V+     +    + R     +     +       + G     
Sbjct: 148 MRSAATQYYEPRMFALSIVVAVLSSIALLTLSRHLRQYSGMFHQMFRYGVSLLLG---AG 204

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------MSN 504
           L  +H+      R ++  ++ +         +  +  A      +   I        +  
Sbjct: 205 LLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAITLLIIAGSISAAMADKKLQG 264

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T    
Sbjct: 265 KENDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLLE-HTHSKG 320

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S 
Sbjct: 321 MLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CILLSI 379

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +   +  PI L  R + +T SIG A +     T  E+LK+A+LA+Y +
Sbjct: 380 PDYEEARHLAHRVMHKMKEPIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQS 439

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEAL 741
           K  G N V  F  +      + +  +  L     E   L + Y PI+ +    +  LEAL
Sbjct: 440 KGNGRNRVNFFSPALKTKASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKLEAL 499

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G ++   F+ IAE   +I  ++ ++L R  RD+ + R++     + I +N +
Sbjct: 500 VRWHHPQHGLLAPVRFIGIAEANGLIAELDNWVLRRACRDLATLRNEGLEQ-LIITVNCS 558

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL++D
Sbjct: 559 ALTLGRDELVEEVEQALADANAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSID 618

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +     + + + I+++II MA  +   ++ + + 
Sbjct: 619 DFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPDSPQDMEIVQAIIVMAHTLHLKVVTEGVE 678

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L + G DY+Q    + P     IL L K+
Sbjct: 679 TPAQLEFLNQFGSDYVQGYLFSRPQPLERILPLAKQ 714


>gi|332531233|ref|ZP_08407146.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Hylemonella gracilis ATCC 19624]
 gi|332039340|gb|EGI75753.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Hylemonella gracilis ATCC 19624]
          Length = 1137

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/650 (19%), Positives = 252/650 (38%), Gaps = 60/650 (9%)

Query: 354  LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE--RQSLAV 411
              +  T  L+ D +         L+       V + +  T   +Q      +  R S A+
Sbjct: 489  TALGETPVLNGDGVLMPTEVVTTLLTDEKTGRVTRVLGVTRDITQRKKDQDQLIRLSQAI 548

Query: 412  LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTILD 469
              S   V   ++  +     P    + G     + G     L          D     + 
Sbjct: 549  EQSPASVVITNLEGNIEYVNPAFEAMSGYTQAEVLGTNPRLLNSGRTPAEVYDTLWLTIK 608

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
            +           E   RA D + + + + I P+ N+  ++  Y+ +  D+T Q+ + E  
Sbjct: 609  A-----GQAWHGELINRAKDGRDYVVSMTIAPVRNAKDEVAHYLAVQLDVTLQRNAEEKA 663

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-------RPTVMVIDIDKYKKINDV 582
               A+   LTG+PNR   L  L   L+  A            +  ++++D+D+++ +ND 
Sbjct: 664  RQLAWFHPLTGLPNRHRLLLDLKETLETRAAPRAPDEGPVAEQCALLLLDLDRFQTVNDA 723

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-------------- 628
            LG A GD +L  L+ R    L     LA L+ + F ++L    +                
Sbjct: 724  LGPAAGDQLLRQLSWRFAAALPPEAQLAHLNADEFAVLLQPVRSGDHAGAQGEPAAREAV 783

Query: 629  --KIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTS---------------SKITS 670
              +    A ++  ++  P+ L     + V+  IG                      + + 
Sbjct: 784  GAQALRLAQSLHDTLTTPVQLAHGESLAVSCCIGITLLPHRVEVEGLPQSPGGVLEQDSP 843

Query: 671  SEMLKNAELAMYHAKHR-------GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
              +L+ A+ A++ AK         G        +    S R +I+ DL   +   EL + 
Sbjct: 844  ENVLRRADTALHRAKDSRGREGSAGHTAFFDASMEQVVSRRFLIERDLRRGLAAGELRVY 903

Query: 724  YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
              P +     ++V  EAL++W HP+ G ++   F+ +AEE  +I  +  ++L+ +   + 
Sbjct: 904  LQPQVDAE-GQMVSAEALVRWQHPEQGLVAPGAFIPVAEESELITDVGRWVLQGVCAHLG 962

Query: 784  SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            + R +     + I +N++++          +Q  +     +P  + +  +ES++M   E 
Sbjct: 963  ALRARGLR--LPIAVNVSTRQFHQPSFVHEVQEALRVHGAAPGDLIIEITESILMEQVEN 1020

Query: 844  SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRS 901
                + +L  +G+  +LDDFGT  S L+YL  +P D +K + S +    +     A++ +
Sbjct: 1021 VTRKMSQLASLGVKFSLDDFGTGYSSLAYLKRLPIDEIKIDRSFVQDAPTDPNDAALVDA 1080

Query: 902  IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            I+ +A+++   ++A+ +        L   G    Q      P     +L 
Sbjct: 1081 ILSVARHLRLKVVAEGVETRAQADFLHARGQIVQQGYLHGRPAPAEDVLA 1130



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 7/154 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGS 444
            ++ +       Q +        L    S D+VW +D+  D  +  +P +  + G     
Sbjct: 393 SLRDIEELQRAKQALLESEALYRLLADNSSDVVWLYDLEADHYLYASPAV-RLFGYDPAQ 451

Query: 445 MHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQY--EFRVRAADNQFHWMIIRIR 500
                        +     +  R  + +       +     E  V   D       +   
Sbjct: 452 ATSMSFKDVLPAAVEQATLERLRQRIAALQEGDESQRTALGETPVLNGDGVLMPTEVVTT 511

Query: 501 PMSNSN-GDILRYIGIANDITEQKKSLEGILCNA 533
            +++   G + R +G+  DIT++KK  + ++  +
Sbjct: 512 LLTDEKTGRVTRVLGVTRDITQRKKDQDQLIRLS 545


>gi|254515524|ref|ZP_05127584.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           NOR5-3]
 gi|219675246|gb|EED31612.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           NOR5-3]
          Length = 654

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 210/445 (47%), Gaps = 13/445 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ + I   A  D+LTG+PNR+   DRL   L  +  ++  +  ++ +D+D +K++ND
Sbjct: 207 RSQAEDTIERQALFDDLTGLPNRRLLQDRLGQALARAKRNE-TQAALLFLDLDFFKRVND 265

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIA 636
            LG + GD++LV + RR+   L+  D  ARL G+ F  +L       +     +     A
Sbjct: 266 SLGHSAGDELLVEVGRRLSAFLRDADTAARLGGDEFVALLTDIEGGTEHVVSVVRRRGEA 325

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +R++I  PI++   EI +T SIG +          ++LK+A+ AMY AK  G N +  F 
Sbjct: 326 LRRAIEAPIDIQGNEIHITVSIGVSLLPDDTNDVDDLLKHADTAMYRAKDDGRNTLRFFV 385

Query: 697 VSSFRS--DRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                S   R+ ++ +L  A+E +  L L   P        I G E L++W H     I 
Sbjct: 386 PEMQESLSKRMDMERELRAALEANAGLELYLQPQYTEES-VICGAELLLRWQH-NGKFIP 443

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE+  +I  +  +++          +D+ +     +  N++ +        E 
Sbjct: 444 PDVFIPVAEDSGLIYRLGDWVIANACEIGARLKDELSDREFSLAFNVSPRQFRQKGFSEK 503

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I         I+L  +E +++ + + +   +  LR+ G+  ++DDFGT  S L YL
Sbjct: 504 VLEAIEGHHLPRGLIELELTEGLLIEDVDDTVAKMLSLRERGVRFSIDDFGTGYSSLRYL 563

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K + S +    +     +I+R+II MA+ +E  +IA+ +  E     L    
Sbjct: 564 KSLPLDTLKVDQSFVRDVLTDSGDASIVRAIISMAQTLELEVIAEGVETEAVRDFLISAN 623

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C   Q    + PL F    +LL+  
Sbjct: 624 CIRFQGYFFSRPLPFEDFRQLLERE 648


>gi|117620876|ref|YP_856335.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562283|gb|ABK39231.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 643

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 218/464 (46%), Gaps = 17/464 (3%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W   + R +        + +    DIT++K         A+ D+LTG+ NR   +  
Sbjct: 178 GMRWFQYQFRHIQQG----AQILLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKS 233

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L     L       R  ++ +D+D +K +ND  G   GD +L  +  R+ ++      LA
Sbjct: 234 LEAYCGL-----GGRFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLKQICPRDVELA 288

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKIT 669
           RL G+ F  ++   ++S +  + A  M   +  P+ L    E+T+  SIG A +      
Sbjct: 289 RLGGDEFTALVPLSHSSDRAQEVADLMLSQMTKPLQLSGVPEVTIGGSIGIAIYPDDADD 348

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727
              ++  A++AMY AK  G    + F  S  +    ++ +K+ L  A+   EL L Y P 
Sbjct: 349 GDNLITRADMAMYQAKQMGRLRWQRFTPSMQQTLHRKLTLKQFLAKAIGRGELSLCYQPQ 408

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + +   +++G EAL++W +P  G +S  EF+ +AEE+ +I+ I  ++L      +  W+ 
Sbjct: 409 VDVAQGKLLGYEALLRWHNPVLGQVSPVEFIPLAEEMGLIREIGSWVLSTALAQMAHWQR 468

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +     + + +N++   L    L E +   + +   + S + L  +E+V+M + +    +
Sbjct: 469 EW-RVNVPVSVNLSGFQLSSA-LPELVAQQLKEFGVAASLLTLELTETVLMLDMKGCIEI 526

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907
           L  L   GI + +DDFGT  S L+YL  +P DT+K + S + G     + ++R+ + MA 
Sbjct: 527 LDALSAQGIKIAIDDFGTGYSSLAYLNRLPIDTIKLDRSFVVGLN---LPVIRATVAMAT 583

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++   I+A+ +  E ++  L   GC   Q    + P+    + +
Sbjct: 584 SLGLGIMAEGVEDEHELAALRTQGCHVFQGFLFSKPMTLAQVEE 627


>gi|332995577|gb|AEF05632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alteromonas sp. SN2]
          Length = 646

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/428 (29%), Positives = 212/428 (49%), Gaps = 8/428 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A  D LTG+PNR      +   +++S    NL   VM ID+D +K IND L
Sbjct: 211 ESEKRNKQMAHTDALTGLPNRNLLEHTVDKAINMSERS-NLPFAVMFIDLDHFKDINDSL 269

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD +L+++ +RI + ++  D++ R  G+ F  +     +   I   A  +  +I+ 
Sbjct: 270 GHALGDTLLITMAQRISDAIRATDVVVRFGGDEFVAVTDCFESIETIDFIAHRILDTISK 329

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
            + L   +  +TASIG A +  +   SS +LK+A+ AMY AK  G N  ++F    +  +
Sbjct: 330 SVQLGNNDYYITASIGVACYPQNGANSSLLLKHADTAMYQAKEAGKNQYQAFDKLSAIKQ 389

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + ++ +   L  A+ N+E  LVY PI+RL D   VG EAL++W +P    I   EF+ IA
Sbjct: 390 NRKLKLVSQLHHAIANNEFSLVYQPIVRLEDGVTVGSEALLRWTNPDNEAIGPDEFIPIA 449

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  ++L++      +W D        + IN++S  L D    + +  +++  
Sbjct: 450 EHSGQIIDIGNWVLQQACEQCKAWHDAGATHHA-MAINVSSHQLKDQHFAQRLADILASL 508

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 I +  +E++ +   +     L RL ++G+ L LDDFGT  S LSYL  +PFD +
Sbjct: 509 SLPAECIHIEVTENIAIMEEQACVASLYRLSELGVQLLLDDFGTGYSCLSYLKNLPFDVL 568

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S M         I  +II M   ++  ++A+ I  ++    L ++ C Y Q     
Sbjct: 569 KIDKSFM----PANNTIASTIIAMGHELDMEVVAEGIETDMCYAMLQKLNCQYGQGYLFQ 624

Query: 942 SPLGFNSI 949
            P+  +  
Sbjct: 625 KPVPASEF 632


>gi|119489600|ref|ZP_01622360.1| hypothetical protein L8106_08326 [Lyngbya sp. PCC 8106]
 gi|119454512|gb|EAW35660.1| hypothetical protein L8106_08326 [Lyngbya sp. PCC 8106]
          Length = 856

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/428 (27%), Positives = 227/428 (53%), Gaps = 8/428 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR  FL+ +   ++   T       ++ ++ID++K IND LG   GD +L++
Sbjct: 426 HDPLTGLPNRGGFLNYIEKEINF-KTRQKTFCGILFLNIDRFKVINDSLGHQAGDQLLIN 484

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L +R+   ++  D++ARLS + F I++            A  +++++ +P +L  +E+  
Sbjct: 485 LVQRLRTCVRTRDMIARLSADEFAILIEHLRQPQNAIWVAERIQQALIVPFDLQGQEVFR 544

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
           T SIG A   S+  T+  +L+NA  AMY A+ +G    + F           + ++ DL 
Sbjct: 545 TISIGIALNDSTDTTAEALLRNANTAMYQARSQGTGSYQVFEHKMSVDGKQHLQLETDLR 604

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  E  L Y P++ L   +++GLEALI+W HP+   +   +FM IA+E  +I  +  
Sbjct: 605 RALERQEFVLHYQPLVSLKTGKLIGLEALIRWQHPQKDLLFPDDFMSIAKETGLIIPMGQ 664

Query: 773 FMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           ++++     +   +DQ      + + +N++S+     +L E +Q +I  +  +P  ++L 
Sbjct: 665 WVIKEACHQLKRLQDQFGNSLDLIMGVNLSSRQFSQPDLVEQIQEIILASGINPQNLRLE 724

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            SESVVM   + +  LL +L+ + + L++DDFGT  S LS L   P DT+K + S ++  
Sbjct: 725 ISESVVMKEVDETITLLQQLKALNVRLSIDDFGTGFSSLSSLNRFPVDTLKIDRSFISQM 784

Query: 892 TEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                   + ++++II +A  ++  +IA+ +     +++L  +GC++ Q  +   P+  +
Sbjct: 785 ETDGEGENLVVVQTIITLAHVLKLAVIAEGVETLKQVEQLRLLGCEFAQGFYFLRPVSAD 844

Query: 948 SILKLLKE 955
             +  ++ 
Sbjct: 845 LAIAFIES 852


>gi|320085801|emb|CBY95577.1| Protein gmr [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 660

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKEQDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFIHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|329912972|ref|ZP_08275854.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327545470|gb|EGF30674.1| putative GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 781

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 202/442 (45%), Gaps = 7/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + +         A  D LTGIPNR  F +     L  +     L   V  +D+DK+K 
Sbjct: 336 IQQLETEKTRAFQLASLDFLTGIPNRMKFYELAEIELVRARRSRKLT-AVFFLDLDKFKA 394

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G  VGD +L  +  R+   L+  D+ ARL G+ F +++   ++   +A  A  + 
Sbjct: 395 INDTHGHGVGDLLLQQVASRLRHSLRGYDLAARLGGDEFAVLVSGLDSDDAVATVANKLV 454

Query: 639 KSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            S++    +L   ++ VT SIG A +         +L  A+ AMY AK  G      +  
Sbjct: 455 ASLSATYLDLDGHDLDVTPSIGIALYPGDGEEIDTLLSRADRAMYLAKQSGRGCYRFYEA 514

Query: 698 SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S   +      +      A+ + E  L Y   +  +D   VGLEAL++W HP+ G I   
Sbjct: 515 SLNATSARSAELVARFRRAIRDGEFRLHYQQRVACLDFRPVGLEALVRWQHPEHGLIFPG 574

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+   I  +   +++     +  W  Q     + + INI+++ L D+ L   + 
Sbjct: 575 EFIDLAEQHDYIVTLGNHVIDMACAQVADWLQQGLTV-LPVAINISARQLRDDTLPGVIT 633

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + K   S S I++  +ES  +  PE +  +L  L  +GI ++LDD+GT  S LS+L  
Sbjct: 634 GCLEKYAVSASLIEIEVTESCFIEQPELAEQVLAALHALGIRISLDDYGTGFSGLSHLKR 693

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P  TVK + S +           I+ S I ++ N+   ++A+ +     +  L   GCD
Sbjct: 694 LPISTVKIDRSFIRDIRNDNSDAVIVSSTISLSHNLGLKVVAEGVETRDQVVHLKTAGCD 753

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q  +   P     I  LL+ 
Sbjct: 754 ELQGYYFHRPAAAAEITALLRN 775


>gi|167569963|ref|ZP_02362837.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Burkholderia oklahomensis C6786]
          Length = 744

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 136/534 (25%), Positives = 245/534 (45%), Gaps = 9/534 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           V  + DI    G    ++          +  +D+      L   +      +  E R+R 
Sbjct: 201 VYISHDIIR-FGHDRAALLASPAWARELVDPDDQAKVDAALARVLEKDADDVSIEIRLRT 259

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D     +  R  P+ + +G ++   GI  DITE+K + E I   A  D LTG+ NR SF
Sbjct: 260 GDGACRRVENRYVPVRDESGRLIEVEGIVIDITERKAAEEKIAQLARTDALTGLANRASF 319

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L RL   L  +A        + ++D+D+++ +ND LG  +GD +L     R+    +  D
Sbjct: 320 LARLWQALA-AAQHGGTPFAIFLVDLDRFQLVNDRLGYPIGDLLLREAAARLRNCTRASD 378

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARLS + F ++             A  ++ ++A P  L   ++ ++ASIG   +    
Sbjct: 379 LVARLSDDAFAVLQGEMGEPADAGVLAAKLQTALASPYLLNGNDVRISASIGVRPYVQGD 438

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725
             +  ML  AELA+  AKH GG+          R+  +RV + EDL  A++  EL L Y 
Sbjct: 439 AEADAMLAQAELALLRAKHMGGSRHRFHSDELDRAVLERVALAEDLKGAIDRGELELQYQ 498

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    I+G+E L++W HP  G +S   F+ IAE    + A+  ++L++  R + +W
Sbjct: 499 PEVELSSGNILGMEGLVRWHHPTRGLVSPGVFIPIAERDGTMAALGRWVLDQACRQMRAW 558

Query: 786 RDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           RD+  + P+ I IN++  +L         +    +K   +PS ++   +E+ +       
Sbjct: 559 RDE-GVAPLMIAINLSLFELKSARAFVRDVAETAAKWRLAPSDLEFDVTETTLARLAWAQ 617

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
             +L +L ++G  + +DDFG++ +   Y+     + +K   SL+       +  A +R+I
Sbjct: 618 SDVLAQLHELGAKIAIDDFGSEFASFDYVKAYRVNHLKIAQSLVRRSTLDPESAATIRAI 677

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTR-MGCDYIQDSHVASPLGFNSILKLLKE 955
           + +A +I   +IA+ +  E     L         Q    +  +G     +LL++
Sbjct: 678 VALAHDIGIGVIAQGVETEQQRALLAATNRATNAQGFRFSEAVGAARASELLRQ 731


>gi|219855856|ref|YP_002472978.1| hypothetical protein CKR_2513 [Clostridium kluyveri NBRC 12016]
 gi|219569580|dbj|BAH07564.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 566

 Score =  442 bits (1138), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/552 (22%), Positives = 260/552 (47%), Gaps = 20/552 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PIRNWLPYI-HINDRDNF 464
             A+ G+   +W+W+I   ++  + +I  I+      + G   +  ++  I +  D+   
Sbjct: 19  RRALNGADYGIWEWNIDTGKIFISENIKKIV---ENDLLGITTMYEFIDNIAYGKDKALV 75

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L  ++       Q  FR++  +    W++I+ +   + +     + GI ++I+E K 
Sbjct: 76  IRELYEYINGNEPFYQSAFRLKNKN--LAWVLIKGKMSKSESECCRLFSGIMSEISENKL 133

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           S          D       R  FL ++   L+++    N R  ++ I+ID +K +N +LG
Sbjct: 134 SENWDEIIKVSD-------RAFFLKKIEYSLNMAKLH-NSRAAIIYINIDNFKSLNTILG 185

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +G+ +L+  ++ I  +L     L ++  + F I++   N    +      + +    P
Sbjct: 186 HNIGNIILMLFSQSIIRILDKYGELGKVGEDEFAILVSEFNTIKDVKKICNKIHRCFQEP 245

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +++ +I +  +IG + +        E+LK    AM   K +G N    F    F    
Sbjct: 246 FKIMDYKIYIEVNIGISIFPEHGSEGHELLKYCYFAMNSFKEKGKNPYAFFDKQVFDIYC 305

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             I  + +L  ++ N+EL + Y P + ++  +I+G+EAL++W++ K G +S  EF+ I E
Sbjct: 306 RRILIENELKNSIFNNELEVYYQPQVDILSNKIIGVEALLRWNNKKLGRVSPEEFIPIIE 365

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  I  ++L+++   I +W+++       + +NI+   L  ++    + A  +K  
Sbjct: 366 KNGYIVEIGNWVLDKVIYTIHNWKEKGIQLD-SVAVNISPVQLKKSDFKNKVLAFCTKYD 424

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS ++L  +E  ++   + S  +  +L +  I++ LDDFGT+ S LSYL  +P  T+K
Sbjct: 425 VPPSLLELEITEGTLLEMSDNSIKVFNQLVESNINIALDDFGTRYSSLSYLVSLPVSTLK 484

Query: 883 FNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +     EK   ++RSI+ ++K++   II + +  +  +  L  +GC+ IQ  + +
Sbjct: 485 IDKLFVDNIQYEKNKILIRSIVDLSKSLNCRIIVEGVETKAQVDILNNLGCNIIQGYYFS 544

Query: 942 SPLGFNSILKLL 953
            PL    +  LL
Sbjct: 545 KPLSQKELENLL 556


>gi|206578357|ref|YP_002237583.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
 gi|206567415|gb|ACI09191.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
          Length = 636

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 12/425 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A+ D+LTG+PNR SF  RL  I++           VM+ D+D +K +ND LG 
Sbjct: 219 NRRLQYDAYHDSLTGMPNRLSFWQRLQEIVNQVRPYQGC-AVVMLFDLDSFKDVNDTLGH 277

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  L  R+    K  + L RL G+ F ++       + +   A  +R+ I+ P 
Sbjct: 278 DAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEEMALER-ANVIREKISQPY 336

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            + + +I + A IG         T   + K A+LA+Y AK  G  HV+ FR        +
Sbjct: 337 QIYDAQINIDACIGIVISDGESRT-DYLYKCADLALYEAKKEGSGHVQIFRPGMLQRLQE 395

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               ++DL  A+ + E  + Y PI   +  EI G EAL++W HP  G +  + F+ +AE+
Sbjct: 396 NKSFEDDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEK 455

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I  +  ++L+    +  SW       P+ + +N++   L++  L + +  ++ +T  
Sbjct: 456 IGLINTLGEWVLKTACAEAASWA-----TPLKVSVNVSPIQLMNTSLTDTIIGVLQQTGL 510

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +ES V     RS  +L +LR+ GI +++DDFGT  S LS L Y PFD +K 
Sbjct: 511 DPRRLDLEITESDVFNENTRSLEILSQLREQGIQISIDDFGTGYSSLSRLSYFPFDKIKI 570

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E    + I+R II M K++   I+A+ +  E  +  L  +GCD +Q   + 
Sbjct: 571 DRSFVINIPEQKDDLDIVRLIISMGKSLHMRIVAEGVETEEQLTSLQALGCDLVQGYLIG 630

Query: 942 SPLGF 946
            P   
Sbjct: 631 KPSPL 635


>gi|152992966|ref|YP_001358687.1| hypothetical protein SUN_1377 [Sulfurovum sp. NBC37-1]
 gi|151424827|dbj|BAF72330.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 757

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 135/753 (17%), Positives = 298/753 (39%), Gaps = 30/753 (3%)

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
            ++          ++   +I F     L+      + +W A       S L    + Y  
Sbjct: 15  QNLFSSMQGTLIALVILETILF---FMLLPFMGKIMYLWYAVILSLSVSRLYD-GYQYRK 70

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
             + H+ V +     +   +    +     +    ++      + +          +   
Sbjct: 71  NPKKHSVVHWHKLVAVKAWSTALLLMLLALITIPQLSEYHQLFVFMILIGISGGAVLSLS 130

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT- 393
               + I    ++ +      + +       I    ++  + L+ ++     I  ++   
Sbjct: 131 SDYRMAIIHVTILLVPVAVEMLLLQTWNSIIIGLLLILYFITLVSVVFSDHDINLLMERK 190

Query: 394 ----GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     + S  E  SL    +   ++ ++              +  L    + G  
Sbjct: 191 NEEIARVQSELQSKQEMLSLIFEQAPIGIFTYNNDLVITDCNQTSLDLFRLKKEEIVGIS 250

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            + LP     D           +          +R     +  +W+  +  P+ N   ++
Sbjct: 251 LSQLP-----DSSPVEPS-KKALTEGTQTYVGPYRSIKKID--YWVEAKCAPLYNREYNV 302

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  I +  D T++  +L+ +   A  D+LT + NR+ F+  +  ++            + 
Sbjct: 303 VGGITLIEDKTKEHNALKELQYYATHDSLTSLNNRRGFISFMEKMISR-QEHQTYYSILF 361

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-- 627
            +D++++K IND LG + GD +L++++ R+  L+   + L R+ G+ F I+    +    
Sbjct: 362 YMDLNQFKYINDSLGHSFGDKLLIAVSERLKLLVDEHNNLTRMGGDEFIIVAPFIDKELQ 421

Query: 628 ---LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               K  +    ++KS   P  + +  + V  SIG      +     E++++A+++MY A
Sbjct: 422 KTKEKAEECIAKIQKSFDEPFVIDDVLLHVKTSIGVVIIEPNFNNIEEIVRHADVSMYQA 481

Query: 685 KHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G  ++  +     + R     ++ +L  A+ ++EL L Y PI+ + D+ +   EALI
Sbjct: 482 KKHGHEYISYYNKALDAERKKIFNLQHELISALRDNELELYYQPIVNIKDDSLRAAEALI 541

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +   +F+ +A E  +I  +  ++L+ + R I  W++       ++ IN+ +
Sbjct: 542 RWQHPEQGLVLPEDFIPVAIESGIIVEVGWWVLDTVCRQIKEWKETGKWKVKYVSINLNA 601

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K LL N         + +   + S IK+  +E+ ++ N E ++ ++  L+K GI   +DD
Sbjct: 602 KQLLKNNFARTFLGKLDEYGVNSSDIKIEITETSLIDNFEITQDVIQELQKNGIKCAIDD 661

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  + F  +K +   M      E+ I ++R++I + K     ++ + I  
Sbjct: 662 FGTGYSSLSYLKKLSFSVLKIDREFMFDLVSDEESITLMRTMISIGKQFNYNVVIEGIED 721

Query: 921 EIDIKELTRMG--CDYIQDSHVASPLGFNSILK 951
                 +  +     Y Q   ++ PL      +
Sbjct: 722 IYQKNLIREIDDTVSY-QGYVISPPLPEAEFRE 753


>gi|146292899|ref|YP_001183323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|145564589|gb|ABP75524.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 749

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/589 (21%), Positives = 243/589 (41%), Gaps = 26/589 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILG- 439
            T+I         +       E Q LAV         +   + +   +        I+  
Sbjct: 167 LTLISEAARLASLAIERSRSMEFQRLAVKIFDRLPLALVITNSLDAVLYANAAFKQIVQP 226

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               S +   + +L     ++ D     L +         Q E      + +  ++ + +
Sbjct: 227 QTVESSNFHPKTFLSQSEPHELDMLFQHLSA-----GKMWQGELVGLRGNGETFYLDLTV 281

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                 + +   +  + +DI+E+KK+ + I   A  D+LTG+ NR +   ++ T++    
Sbjct: 282 TVFREPHSNYNGFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQTLITSDC 341

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  + M++D+D +K++ND  G   GD +L+ +  +I   L    + ARL G+ F +
Sbjct: 342 LTPG--FSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVGQIKTCLDSSIMFARLGGDEFAL 399

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAE 678
           +L        ++  A  + K++     L  ++ +  + SIG A +    +   ++L  A+
Sbjct: 400 LLPGVVTQKALSQLAEKIIKNVYRRYELSKDKGVYSSVSIGIARFPEDALNLEQLLNCAD 459

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY +K  G N    F     ++      +   L  A++     L Y PI+      IV
Sbjct: 460 QAMYISKANGRNRYHFFTEQMQQNAERIANLHTLLKQALDQQAFELYYQPIVNATTGLIV 519

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E L++W H +   I+  EF+ IAE   +I  I   +     + I   +D      I +
Sbjct: 520 RAEVLLRWQH-EGQFIAPDEFIPIAENSGLIVDIGRNVRRCAMQTIKEMQDHGWG--ISL 576

Query: 797 LINIASKDL----LDNELCEGMQALISKTLY---SPSRIKLSFSESVVMGNPERSRLLLG 849
            +N+++ +     L +  C+    +I +          I L  +ES++M        +L 
Sbjct: 577 AVNVSTFEFWSHELQDAFCDSFADIIEELGLVDFPYELITLEITESLLMKQHVHLIKVLN 636

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            LR  G+ ++LDDFGT  S LSYL   P D +K + S +      E+  A++ +I+ ++ 
Sbjct: 637 ELRARGVKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLAEGERHEALVEAIVRLSH 696

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  ++ A+ +  E  +K +       IQ      P+   +  +LL ++
Sbjct: 697 ALNLSVTAEGVETEAQLKFVMANDIQEIQGYLYYQPMPKAAFFELLAKQ 745


>gi|205359697|ref|ZP_03224392.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205343837|gb|EDZ30601.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 663

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKEQDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFIHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|157370654|ref|YP_001478643.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Serratia proteamaculans 568]
 gi|157322418|gb|ABV41515.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Serratia proteamaculans 568]
          Length = 697

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 221/565 (39%), Gaps = 10/565 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q I      Q   +  S D +   +     +      +  LG+        +  WL  +
Sbjct: 131 KQIIAEKLAAQKNMLDASVDCIKVINNDGSLLHMNKAGSIALGVDENQQQFGMP-WLGLL 189

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               R   +  L   +  +  R          D +       + P+ + +  I   + ++
Sbjct: 190 QPEVRQRGQKALRKVLSGKNARFAG--LSATPDGRLQHWDNILSPVFDKDARIQNILCVS 247

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D++ Q+ + + +L  +  D LTG+PNR+ F  RL   +  S  ++     ++++D+D +
Sbjct: 248 RDVSSQRIAEKRLLIASEYDELTGLPNRRLFKKRLKQEMKRSRANNK-SLGLILLDLDHF 306

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND LG   GD +L  L RR+   L     ++RL G+ F +++    N   I   A  
Sbjct: 307 KLVNDTLGHDAGDHLLRVLARRLKADLNANSFVSRLGGDEFAVVISDVENEQDIFKIANN 366

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
               +  PI    + +    SIG A +      +SE++K A+ A+Y  K  G   V  F 
Sbjct: 367 FLLQLETPITHGGKALHCGMSIGGALYPQDARDASELMKCADTALYELKDGGRGGVYMFN 426

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +R          V N+++   Y P + L    IVG EAL++W  P+ G  + 
Sbjct: 427 PQMMDKARERATQLNHARQIVRNNQIRPSYQPKVNLATGAIVGFEALLRWYCPQNGIQTP 486

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
                   +  +   I   M  ++  DI +W        + + +N +  + L +   E  
Sbjct: 487 DSVCEAFNDYELATKIGETMQMKVFADISAWLASGAEV-LPVSLNASPIEFLRDSYAETF 545

Query: 815 QALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              +         I+L  +E     +  +     L  L+++GI + LDDFGT  S  ++L
Sbjct: 546 LQRLQMFNIPHHLIELEVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHSSFTHL 605

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K +   +     +     I+ S+  + + +   IIA+ I  E   + L   G
Sbjct: 606 MNYPLDCIKLDRDFIRRMNNETAILGIVESMGILGQKLSIDIIAEGIETEQQRQTLCNSG 665

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
               Q    +  +     L +L +R
Sbjct: 666 YHLGQGFLFSQAVEAPRALSMLLKR 690



 Score = 46.1 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 12/117 (10%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                     GL+  S       WL  +H +D     ++    +         + R+R  
Sbjct: 37  HFNKLWCEYSGLS--SYDNRNTGWLKALHPDDYALVDSLCQQAMTT-ATSFVKQARLRHC 93

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ---------KKSLEGILCNAFQD 536
             ++HW ++        N     +     DI  Q         K + +  + +A  D
Sbjct: 94  SGEYHWFLLSFGVKKAPNSAHNHWFLSCTDIHHQMLEKQIIAEKLAAQKNMLDASVD 150


>gi|289662445|ref|ZP_06484026.1| putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 785

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 221/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 347 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 405

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  RI + L    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 406 DSQGHAAGDGLLRDIALRINDQLTATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 464

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 465 IASPLPVGHMTVHPSASIGVAMFPEDGREINILLRHADLAMNRAKKEGGGRFRFFSSDMN 524

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 525 RMAQERVALEAELRQAIGRHQLQLHYQPQMHSAAPHTLYGVEALLRWNHPQLGAVSPARF 584

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 585 LPVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLQL 643

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I+     PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 644 IADMGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 703

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 704 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 763

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 764 QGYLFSRPLPAAALEAWLGAQ 784



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q         + A+ GS   +   D+    +        + G     + G    + L
Sbjct: 61  AGEQPEQRRSRLLAEALDGSSSAILICDLQSRMLYANDGFQRMFGYTEAEVVGLRPSDVL 120

Query: 454 PYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    R   D+    R   L     V   D    W+ +   P+ ++N     
Sbjct: 121 TRAQSDQSEVARVRESADALQHTRADLL-----VYRKDGTPLWISLNFNPIYDANHAPSH 175

Query: 512 YIGIANDITEQKKSL 526
           Y+ +  DIT+ K   
Sbjct: 176 YVAVLTDITDTKMHE 190


>gi|167562785|ref|ZP_02355701.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) and Response Regulator
           [Burkholderia oklahomensis EO147]
          Length = 744

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 135/534 (25%), Positives = 244/534 (45%), Gaps = 9/534 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           V  + DI    G    ++          +  +D+      L   +      +  E R+R 
Sbjct: 201 VYISHDITR-FGHDRAALLASPAWARELVDPDDQAKVDAALARVLEKDADDVSIEIRLRT 259

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D     +  R  P+ + +G ++   GI  DITE+K + E     A  D LTG+ NR SF
Sbjct: 260 GDGACRRVENRYVPVRDESGRLIEVEGIVIDITERKAAEEKTAQLARTDALTGLANRASF 319

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L RL   L  +A        + ++D+D+++ +ND LG  +GD +L     R+    +  D
Sbjct: 320 LARLWQALA-AAQHGGTPFAIFLVDLDRFQLVNDRLGYPIGDLLLREAAARLRNCTRASD 378

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARLS + F ++             A  ++ ++A P  L   ++ ++ASIG   +    
Sbjct: 379 LVARLSDDAFAVLQGEMGEPADAGVLAAKLQTALASPYLLNGNDVRISASIGVRPYVPGD 438

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725
             +  ML  AELA+  AKH GG+          R+  +RV + EDL  A++  EL L Y 
Sbjct: 439 AGADAMLAQAELALLRAKHMGGSRHRFHSDELDRAVLERVALAEDLKGAIDRGELELQYQ 498

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    I+G+E L++W HP  G +S   F+ IAE    + A+  ++L++  R + +W
Sbjct: 499 PEVELSSGNILGMEGLVRWHHPTRGLVSPGVFIPIAERDGTMAALGRWVLDQACRQMRAW 558

Query: 786 RDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           RD+  + P+ I IN++  +L         +    +K   +PS ++   +E+ +       
Sbjct: 559 RDE-GVAPLMIAINLSLFELKSARAFVRDVAETAAKWRLAPSDLEFDVTETTLARLAWAQ 617

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
             +L +L ++G  + +DDFG++ +   Y+     + +K   SL+       +  A +R+I
Sbjct: 618 SDVLVQLHELGAKIAIDDFGSEFASFDYVKAYRVNHLKIAQSLVRRSTLDPESAATIRAI 677

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTR-MGCDYIQDSHVASPLGFNSILKLLKE 955
           + +A +I   +IA+ +  E     L         Q    +  +G     +LL++
Sbjct: 678 VALAHDIGIGVIAQGVETEQQRALLAATNRATNAQGFRFSEAVGAARASELLRQ 731


>gi|302878764|ref|YP_003847328.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Gallionella capsiferriformans ES-2]
 gi|302581553|gb|ADL55564.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Gallionella capsiferriformans ES-2]
          Length = 852

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 225/441 (51%), Gaps = 7/441 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++ +++ +     +  D LTG+PNR+ F  RL   LD S  ++  +  VM +D+D++K +
Sbjct: 394 SQLQQARKEQEYLSDHDALTGLPNRRHFSKRLEHALD-STRENRAQFAVMFLDLDQFKLV 452

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +GD++LV +  R+ +       LAR+ G+ F I++    +  ++ +       
Sbjct: 453 NDTLGHHIGDELLVQVANRLVQQPGSGQTLARIGGDEFNILIEGVGDIQQLKEIVGQYLA 512

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
               P      EI ++ASIG A++      S  ++K+A+LAMY +K +G N+   +    
Sbjct: 513 QFHEPFLCAGLEIDISASIGVATFPRDGEDSVSLIKHADLAMYKSKDKGRNNYSFYSDDL 572

Query: 700 FRSDRVM--IKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +    +   L LA+E   +  L Y P   ++  +I  +EALI+W  P +G +   +
Sbjct: 573 AEYAQKRADMTAALKLAIEAGDQFELYYQPKTSVLTHKIDAVEALIRWRSPNFGMVPPGQ 632

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  I L++L++  RD +  + +       I +N+++  L ++E    ++ 
Sbjct: 633 FIALAEETGLIVPIGLWVLKQGLRDFLELQREGIQLE-HISLNVSNVQLRNDETVAALKD 691

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I+ +  +P  I+L  +ES +  +   +  +L   R +G+ L +DDFGT  S +SYL  +
Sbjct: 692 VIAASGVAPDHIELEITESYIADDVNHAIGVLQSFRDMGVGLAIDDFGTGYSSMSYLKKL 751

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G   +E  I +  S+I +AKN    I A+ +  E  +  L +  CD 
Sbjct: 752 PVTRIKIDKSFVDGLPGSEDSITLTNSVIALAKNFGLAITAEGVELESQLVFLEQQCCDQ 811

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ  + + PL FN +    + 
Sbjct: 812 IQGYYFSKPLPFNELKDYCRS 832


>gi|163752028|ref|ZP_02159237.1| sensory box protein [Shewanella benthica KT99]
 gi|161328080|gb|EDP99249.1| sensory box protein [Shewanella benthica KT99]
          Length = 720

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 131/622 (21%), Positives = 258/622 (41%), Gaps = 27/622 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  + + + I   L+  +              +   T +   LA    +   +   ER 
Sbjct: 113 IMSSLDVAIRINGHLEGILYLERTFAASWTDSEIHIATHVADQLALTLATHNAYEKDERL 172

Query: 408 SLAVLG---SGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           +L +     S  +    ++  D V         I G+    + G     L +    + + 
Sbjct: 173 TLLLSADEESEQMSMLINLKTDLVEYVNQAHEFISGIPKHQIIGQSFKRLNFF-KQNPEQ 231

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              +L+        +   E  +   D + +W+   I+      G+    +  A+DI+E+K
Sbjct: 232 ANFVLEKVSMGSVAK--GESLIVREDGRQYWLRYSIKQFITERGNHYALV-KADDISEEK 288

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A++  LTG+ NR  F   L                +++ID+  +K+ ND  
Sbjct: 289 QYQAKLEHLAWRCGLTGLYNRSYFNKELEHC---------QSGQLILIDLCGFKRFNDTY 339

Query: 584 GIAVGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G   GD +L+ + RR+         + LAR+  + F IIL   N        A  +   +
Sbjct: 340 GHKSGDALLIEMARRLKHFAHVNKTEQLARVGSDEFAIILPMLNQMDMDYIIA-RLYSQL 398

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
            +P+ +   +I    ++      S   +   +   A++A+ +AK +  + V+ F  +  +
Sbjct: 399 ILPVIIGREQIQPKPALAIVDIESVGDSFVPL-ACADIALQYAKKKQTDKVQVFNNALLN 457

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   I+ DL  A+   E  L Y PI  L  ++ +G EALI+W HPK G +    F+ 
Sbjct: 458 SFKEDTQIERDLKTALRGREFELYYQPIKDLKSKKYIGAEALIRWHHPKKGVLYPGAFIH 517

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I AI  ++LE   R +  W+       I + +N++++    + L + +  L+S
Sbjct: 518 IAEQTGLINAIGAWVLEAACRQLNLWQHH--QVNISMHVNVSARQFFSDNLFKQVWNLMS 575

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P  + L  +E+ +M + + +  L   L ++G+ L +DDFGT  S + YL   P  
Sbjct: 576 RYRLQPGSLILEITETELMEDIDYATKLCIELSELGVGLAIDDFGTGYSSMRYLKQFPIS 635

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++    +++   I+ +II MA  +  +I A+ +  +     L+   C   Q 
Sbjct: 636 KLKIDRSFISDLTVSKESREIVSAIIAMASALNISITAEGVETKEQEDFLSEHRCHQAQG 695

Query: 938 SHVASPLGFNSILKLLKERFPL 959
              +  L  +   + L +  P 
Sbjct: 696 FLYSPALRESDFNQFLFKSNPG 717


>gi|189423682|ref|YP_001950859.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
 gi|189419941|gb|ACD94339.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter lovleyi SZ]
          Length = 1036

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/627 (21%), Positives = 265/627 (42%), Gaps = 18/627 (2%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
            A  +   ++L    +      + ++L+       L        +L+    + ++L    
Sbjct: 42  TARSITLTFLLFGGIWTISAGLLERQLNLPEGLSYLTHIAAGAGLLLITAAMLYLL-IRR 100

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDW-DIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           F++   S  E    A   S + +    D  R  ++     A + G A  S+ G   + L 
Sbjct: 101 FTRNDSSSHELIIRAFHASPNGIAVVRDQDRRILSVNQRFAAMTGYAVASIVGHSDSDLK 160

Query: 455 Y-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              H ++R     ++         +   E  +R  D       I    +          I
Sbjct: 161 LWEHSSER---LDLIRQIRSNGAVQ-GLEVTLRRQDGSLLTGSISAHRILFEGDSCT--I 214

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               DIT  K++   +      D +TG+PN +   DRL  +L +S+ ++    +V+ + +
Sbjct: 215 IFLEDITLLKQAARKVEELTRYDAITGLPNHKLLSDRLAQLLAISSREEQA-LSVLKLVL 273

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            +        G    D++L S+  R+ ++L+  D LA L    FGI+L    +   I   
Sbjct: 274 GRCPGAISARGGDDCDELLRSVADRLQDVLRETDTLAVLQKGEFGILLPKSGSERDILPV 333

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-----RG 688
              +  +I  P +L + E  + A IG A +     +   +L++A LA   A+        
Sbjct: 334 ITKLLDAINEPFSLHDAEFQLNAHIGIAIFPGDGRSGEVLLQHAHLAQLQAQSKSIAGES 393

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           G    +  ++    +++ I+  +   +   E +  Y P+     +++VG+EAL +W HP 
Sbjct: 394 GFKFYAEEMNQAVREQMQIESSILRGLRAGEFFACYQPLFSQDGKKLVGMEALARWQHPT 453

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +   +F+ +AE    I  +   MLE   ++   WR+Q   P + + +N++++ L D 
Sbjct: 454 LGLVGPDKFIPVAEANGAIVQLGDRMLELALQNCKQWREQ-GYPHLTVAVNVSTRQLKDR 512

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E +   +      P  +    +ES++M +   +   + RL+++G+ L +DDFGT  S
Sbjct: 513 QFAERVARQLQMVGLPPDALCCELTESLLMEHSNENTEQIFRLKELGVKLAIDDFGTGYS 572

Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL ++P D +K + S +    S     AI+ +II MA+++   + A+ +      + 
Sbjct: 573 SLTYLKHLPVDRIKIDRSFVNELDSNPDDRAIVVAIIAMARSLHLKVTAEGVETPSQHQL 632

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L  +GCD +Q  +   P+   +    L
Sbjct: 633 LQELGCDTMQGYYFGKPMQREAFELFL 659



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 537 NLTGIP-NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            LTG+P N     + +         +  +   +  IDID +K  ND  G   GD V+  +
Sbjct: 842 PLTGLPGN-----ESIQRETTR-RLESGMPFDIAYIDIDHFKPYNDFYGFERGDMVIQVV 895

Query: 596 TRRIGELLKF-------PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
              +              +    + G+ F II          A  +  +       + L
Sbjct: 896 GDILKFHADELLQGKQARNFCGHIGGDDFIII----TGPGYAAALSRQVIAEFDARLPL 950


>gi|28871248|ref|NP_793867.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854498|gb|AAO57562.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 756

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/696 (21%), Positives = 292/696 (41%), Gaps = 33/696 (4%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +  +     A  F        V    A  +           +       +  ++L   A
Sbjct: 21  LVALAYGVACAACFATLDIADRVIHVDATTSRRVWKALGALCLAGGVWAMHFISMLAFQA 80

Query: 344 -------WILIFIWFIGLWMAITKRLDNDIIQPALVG--GLVLIVILIGFTVIQHVLATG 394
                    +  +  + + +     +    I    +    +  +++ IG + + ++  + 
Sbjct: 81  PLKISYDLTITLVSLLIVLITALGAMKALTIPELTLKRCLISSVIMGIGISTMHYLGMSA 140

Query: 395 YFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
             S        R  +L  V+     +    + R     +     +       + G     
Sbjct: 141 MRSAATQYYEPRMFALSIVVAVLSSIALLTLSRHLRQYSGMFHQMFRYGVSLLLG---AG 197

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------MSN 504
           L  +H+      R ++  ++ +         +  +  A      +   I        +  
Sbjct: 198 LLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAITLLIIAGSISAAMADKKLQG 257

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              D+ R   +   + + + SL+ +   A  D LT + NR+ F       L    T    
Sbjct: 258 KENDLQRVNALLTQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLLE-HTHSKG 313

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S 
Sbjct: 314 MLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CILLSI 372

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +   +  PI L  R + +T SIG A +     T  E+LK+A+LA+Y +
Sbjct: 373 PDYEEARHLAHRVMHKMKEPIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQS 432

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEAL 741
           K  G N V  F  +      + +  +  L     E   L + Y PI+ +    +  LEAL
Sbjct: 433 KGNGRNRVNFFSPALKTKASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKLEAL 492

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G ++   F+ IAE   +I  ++ ++L R  RD+ + R++     + I +N +
Sbjct: 493 VRWHHPQHGLLAPVRFIGIAEANGLIAELDNWVLRRACRDLATLRNEGLEQ-LIITVNCS 551

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL++D
Sbjct: 552 ALTLGRDELVEEVEQALADANAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSID 611

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +     + + + I+++II MA  +   ++ + + 
Sbjct: 612 DFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPDSPQDMEIVQAIIVMAHTLHLKVVTEGVE 671

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L + G DY+Q    + P     IL L K+
Sbjct: 672 TPAQLEFLNQFGSDYVQGYLFSRPQPLERILPLAKQ 707


>gi|120599030|ref|YP_963604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|120559123|gb|ABM25050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 749

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/589 (21%), Positives = 242/589 (41%), Gaps = 26/589 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILG- 439
            T+I         +       E Q LAV         +   + +   +        I+  
Sbjct: 167 LTLISEAARLASLAIERSRSMEFQRLAVKIFDRLPLALVITNSLDAVLYANAAFKQIVQP 226

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               S +   + +L     ++ D     L +         Q E      + +  ++ + +
Sbjct: 227 QTVESSNFHPKTFLSQSEPHELDMLFQHLSA-----GKMWQGELVGLRGNGETFYLDLTV 281

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                 + +   +  + +DI+E+KK+ + I   A  D+LTG+ NR +   ++ T++    
Sbjct: 282 TVFREPHSNYNGFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQTLITSDC 341

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  + M++D+D +K++ND  G   GD +L+ +  +I   L    + ARL G+ F +
Sbjct: 342 LTPG--FSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVGQIKTCLDSSIMFARLGGDEFAL 399

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAE 678
           +L        ++  A  + K++     L  ++ +  + SIG A +    +   ++L  A+
Sbjct: 400 LLPGVVTQKALSQLAEKIIKNVYRRYELSKDKGVYSSVSIGIARFPEDALNLEQLLNCAD 459

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY +K  G N    F     ++      +   L  A++     L Y PI+      IV
Sbjct: 460 QAMYISKANGRNRYHFFTEQMQQNAERIANLHTLLKQALDQQAFELYYQPIVNATTGLIV 519

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E L++W H +   I+  EF+ IAE   +I  I   +       I   +D      I +
Sbjct: 520 RAEVLLRWQH-EGQFIAPDEFIPIAENSGLIVDIGRNVRRCAMETIKEMQDHGWG--ISL 576

Query: 797 LINIASKDL----LDNELCEGMQALISKTLY---SPSRIKLSFSESVVMGNPERSRLLLG 849
            +N+++ +     L +  C+    +I +          I L  +ES++M        +L 
Sbjct: 577 AVNVSTFEFWSHELQDAFCDSFADIIEELGLVDFPYELITLEITESLLMKQHVHLIKVLN 636

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            LR  G+ ++LDDFGT  S LSYL   P D +K + S +      E+  A++ +I+ ++ 
Sbjct: 637 ELRARGVKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLAEGERHEALVEAIVRLSH 696

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  ++ A+ +  E  +K +       IQ      P+   +  +LL ++
Sbjct: 697 ALNLSVTAEGVETEAQLKFVMANDIQEIQGYLYYQPMPKAAFFELLAKQ 745


>gi|194444703|ref|YP_002040953.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403366|gb|ACF63588.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 663

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 107 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 162

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 163 R-----REAVASRHYIENFFRNVNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 217 ICAGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 274 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 333 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 392

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 452 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 630 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 658


>gi|116253214|ref|YP_769052.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257862|emb|CAK08960.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 783

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 132/594 (22%), Positives = 246/594 (41%), Gaps = 26/594 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +   F  +Q  L +    + +     R +     +  +++  D        +       G
Sbjct: 205 LAYSFNEMQTKLESE--EKELKFAHRRATDIYNLTPAMLFSLDEEDRITAVSDYWLLATG 262

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI-IR 498
               ++ G  RN+   +    RD F              +    +    D +   ++ + 
Sbjct: 263 YNRAAVIG--RNFANLVTPATRDKFVK-----RRQAESGMTVTVKFVCLDGRSMDVLIME 315

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
               + +   +   + +  D+TE K S +     A  D+LTG+ NRQ F   L   +  +
Sbjct: 316 SEAGAGAQDRLS--LSVMTDVTELKASEDRNHRQAITDHLTGLLNRQGFEAVLDNKIAAA 373

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                     + +D+D++K IND +G A GD  LV L  R+   L   D  ARL G+ F 
Sbjct: 374 DAAGQ-ELACLFVDLDRFKWINDNMGHAAGDMALVELVERLKTHLAPSDEAARLGGDEFA 432

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L +++   +       +      P       + ++AS+G A +     T++E+L+ ++
Sbjct: 433 ILLPAKDAENRAKVMCEQIASIFDTPFTPD---MHLSASVGIAIYPHHAETAAELLQKSD 489

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY  K  G N  + F  +       R  I+ ++   + ++       PI+ L    I 
Sbjct: 490 MAMYAKKRDGKNGAQLFDNAMLDRARSRAEIEANIEAGLVDNWFEAFLQPIVTLNGRGIA 549

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++ +HP  G +  +E + +AEE   I  +   ++E+   ++        M   ++
Sbjct: 550 GFEALMRLNHPHKGMMPPAEIISVAEETAKIVRVGNVIMEKAIANLAKISRIPGMQDTYL 609

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN +        L   + A++ +    P RI +  +E+V+M +  + RL++  LR+ G 
Sbjct: 610 AINFSPLQFE-PALPARLAAIVGRHGIRPERIVVEITEAVLMHDNPQIRLIVTELRRFGC 668

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-------EKRIAILRSIIPMAKNI 909
            + LDDFGT  S LSYL   P D +K + S             +K   ++  I  ++  +
Sbjct: 669 RIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAINDGDDDVRQKSRMLIEGITTLSHKM 728

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             T+IA+ I  E + + L +MG DY Q      P    ++++ L      V   
Sbjct: 729 NCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPQHAATLIEELTASQSAVARA 782


>gi|126698337|ref|YP_001087234.1| putative signaling protein [Clostridium difficile 630]
 gi|115249774|emb|CAJ67591.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 556

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 109/552 (19%), Positives = 226/552 (40%), Gaps = 22/552 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D ++ WDI R++   +  I     L+       +  W   ++ +D   ++ 
Sbjct: 17  FELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVNCWSKIVYPDDVQIWKD 76

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +  ++G    E+R+     +  W+  R +   + +   +  +G   +I E+ K  
Sbjct: 77  DIQELLHGKKGEHNLEYRLINKYKEIVWISCRGKVYVSDDPKTIFLVGRIKNIGEKNK-- 134

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D++TG  NR+ F  R+  ++      +     + ++DID +K IN+  G +
Sbjct: 135 --------FDSITGTWNREQFEHRMNYLIKEKIYKNG---AMFIMDIDNFKNINEKYGHS 183

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL ++   + E L     L RL G+ F            I      ++        
Sbjct: 184 YGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCT-KETIEKIYEKIQMYTNTQHE 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--R 704
           +   +   T + G A +        ++ K+A++A+  AK  G N ++ F    + +    
Sbjct: 243 IESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKLKV 302

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +++ L   VEN+  +  L + P +  + +E++G E L++W    +G +S  EF+ I E
Sbjct: 303 ISMQQKLRECVENNFNDFELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPILE 362

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  ++++   +    W      P   I +N++   L ++   + +   + +  
Sbjct: 363 QSNLIIPVGKWIIKEAVKQCKEWHK--INPDFKISVNVSYIQLKEDFFRDFIVECLVEYQ 420

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +E+  + +          L+ IG+ + +DDFGT  S L+YL  +  + +K
Sbjct: 421 LRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK 480

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
              S +   T        L  II +A  I   +  + I    +   +  +G D IQ    
Sbjct: 481 IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLF 540

Query: 941 ASPLGFNSILKL 952
             P+  +   K 
Sbjct: 541 GRPVSASEFYKF 552


>gi|170691860|ref|ZP_02883024.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170143144|gb|EDT11308.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 782

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 211/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR S L  L   +  +   +     ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEYDLLTGLRNRYSTLRTLRQEV--AQPHNLGHLAILFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  E+   +    A A  ++ A P 
Sbjct: 386 NAGDIVLQMTASRLATAVADGGTLSRIGGDEFVVVIKGEDVEKRAVALAEAAAEAFAKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +          
Sbjct: 446 EVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPQLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALAEGQLFLAYQPKIDLTRRCITGFEALVRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 566 TGLIVPIGDFVIETACRQLAVWQQQGYDT-LSLAVNISAVQFWRGDLYETISHAIEESGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 SARRLELEITETAMMEYPELVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFVQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  LL+ 
Sbjct: 745 RPVPVDAIPALLER 758


>gi|291454299|ref|ZP_06593689.1| phosphodiesterase [Streptomyces albus J1074]
 gi|291357248|gb|EFE84150.1| phosphodiesterase [Streptomyces albus J1074]
          Length = 787

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/423 (27%), Positives = 212/423 (50%), Gaps = 7/423 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R+ T LD +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 338 LRDPLTGLPNRQWLLERIWTALDEAEQA-GTRSALLLIDLDRFRSVNDTLGHLAGDRLLL 396

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +   +  P++L    + 
Sbjct: 397 QIAERLRPALPRGAEAARLGGDEFAVLLPVADSTTAAQRVARRLVSELGSPLDLDGLTLV 456

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +      +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 457 LEASAGVAVYPDHAQDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 516

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D  + GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 517 RALDAGEVELHYQPKVRF-DGHVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 575

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 576 YVLETALGQVARWRAQGLNVP--VAVNVSPRDVHSPGFAGAVAARLARHGVPAGALQLEI 633

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 634 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 693

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 694 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPAGETT 753

Query: 951 KLL 953
             L
Sbjct: 754 AWL 756


>gi|330812291|ref|YP_004356753.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380399|gb|AEA71749.1| putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 707

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/570 (21%), Positives = 251/570 (44%), Gaps = 13/570 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++  A    SQ + +     +  +  + + +   D         P    +L   +  + G
Sbjct: 135 RNRRALQRLSQDLEAARAFNASVLDNAAEGILVVDENGCIRFANPSTCRLLNATAEQLQG 194

Query: 448 PIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               +L ++   +  +   + + +          ++  +R A  Q   + +   P+ +  
Sbjct: 195 MP--FLDFLQKPHIPEWLDSDIHNAYRRGETWRLHDAVLRTAPGQQVSVALSCAPLPSEQ 252

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +    D++  +   + +   A  D LTG+ NR+ F      +L  S   ++   
Sbjct: 253 ---KAMVVTLQDMSVVRHLHQQLEYQAVTDPLTGLLNRRGFYQTAENLLMRSERLES-NW 308

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K++ND LG   GD VL  ++ ++   L+  DILARL G+ F  +L     
Sbjct: 309 VLLYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLKACLRPFDILARLGGDEFTALL-DLEF 367

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             + A  A  + + +A+   +   ++ + ASIG A++         +L+ +++AMY AK 
Sbjct: 368 PEQAAKIAEKLIERVAICQQIEGMDVALGASIGIATYPDCGANLDGLLRASDIAMYEAKR 427

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      +          R+M++E +  A+EN +  +VY P + ++D  I G EAL++W
Sbjct: 428 AGRQQYRFYDHEMNGRARSRLMLEESVRSAIENRDFNMVYQPQVSIIDGRIRGFEALLRW 487

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G++    F+ + EE  +I  +  ++  R A     W        + + ++++S  
Sbjct: 488 QHPSVGDVPPGLFLPLLEEARLISRLGSWIYHRSAAQRKVWERLFAD-DLVLGVSLSSTQ 546

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L   ++ ++ +    P ++++  +E  +M NP+ +   L  LR +G+ + LDDFG
Sbjct: 547 FGMPNLVTELRQVLERHALKPRQLEVEVTEDALMRNPDETHKQLRLLRHLGVRVALDDFG 606

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +    L++L  +  DT+K +  L+     + +  A+  S+I +   +   +IA+ +    
Sbjct: 607 SGPCSLTHLRDLELDTLKLDRHLIARVPGSPRDAALAASVIDLCGQLGLRVIAEGVETRE 666

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             + L   GC+Y+Q   VA PL        
Sbjct: 667 QYEWLQAHGCEYVQGFLVARPLMAEDTDAF 696


>gi|325925195|ref|ZP_08186608.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas perforans 91-118]
 gi|325544449|gb|EGD15819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Xanthomonas perforans 91-118]
          Length = 766

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 222/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 327 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 385

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 386 DSQGHAAGDGLLRDIALRVNDQITATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 444

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 445 IASPLPVGHMTVHPSASIGVAMFPEDGHDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 504

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 505 RMAQERVALEAELRQAIGRDQLQLHYQPQMHSAAPHALYGVEALLRWNHPQLGAVSPARF 564

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R    +  WR Q  +P   + +N+++       +   +  L
Sbjct: 565 LPVAEEQGMMPQLNAWVLRRACEQVADWR-QRGVPVARVSVNLSASGFESPRMLPDLLQL 623

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++    PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 624 IAELGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 683

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 684 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 743

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 744 QGYLFSRPLPAQALEAWLGAQ 764



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q         + A+ GS   +   D+    +        + G     + G    + L
Sbjct: 41  AGEQPDQRRARLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVL 100

Query: 454 PYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    R   D+    R   L     V   D    W+ +   P+ ++N     
Sbjct: 101 TRAQSDQSEVARVRDRADALQHTRADLL-----VYRKDGTPLWISLNFNPIYDANHAPSH 155

Query: 512 YIGIANDITEQKKSL 526
           Y+ +  DIT+ K   
Sbjct: 156 YVAVLTDITDTKMHE 170


>gi|209694198|ref|YP_002262126.1| putative signaling protein [Aliivibrio salmonicida LFI1238]
 gi|208008149|emb|CAQ78291.1| putative signaling protein [Aliivibrio salmonicida LFI1238]
          Length = 679

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/426 (29%), Positives = 213/426 (50%), Gaps = 14/426 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV----IDIDKYKKINDVLGIAVGDDV 591
           D LTGI NR  F   +  ++      +++   ++     IDID +K IND LG  +GD V
Sbjct: 252 DLLTGIYNRHGFTHVIEKMIK-----EDIPFFMLYLDIDIDIDNFKNINDSLGHHIGDRV 306

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  ++ R+ +LL    ++  L G+ FGII     ++  +   A  +   I  P +L+   
Sbjct: 307 LKEISTRLQKLLPKHAVVGHLGGDEFGIIFPKPEHNQILDQLAEKIINLINQPFDLVHFS 366

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKE 709
             +  SIG   +      +  +L+NA+ AMY AK RG N +  F          R+ ++ 
Sbjct: 367 KRLACSIGSVQYPVDGTDARSLLQNADTAMYEAKDRGRNRLIKFHDQMNKEARMRLWLEI 426

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A++N+ L + Y P +   D  I G EAL++W HP  G IS + F+ +AE   +I+ 
Sbjct: 427 ELQKALQNNGLEVWYQPKVSARDFRINGAEALVRWKHPVEGYISPARFIPVAERSGLIET 486

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++  + + +  W +Q  + P  I IN++     + +L E M+ L+  T   P+ I 
Sbjct: 487 LGKVVMREVFQTVKEWGNQ-GILPGRIAINLSPAQFGNPQLIEYMERLLKTTQVDPNCIT 545

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES VM + E +  +L  ++K+G +L++DDFGT  S L+YL   P D +K +   ++
Sbjct: 546 LELTESAVMSDGEHAIQMLDAIKKLGFTLSIDDFGTGYSSLAYLARFPVDELKIDRGFIS 605

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 K+I I+ ++I + KN+   IIA+ +        L+ + CD IQ  H   P    
Sbjct: 606 EIDTLPKQITIIENVINLGKNLNMDIIAEGVETRQQAMLLSSLNCDSIQGFHFYKPQPKQ 665

Query: 948 SILKLL 953
            I  LL
Sbjct: 666 EIEALL 671


>gi|325926500|ref|ZP_08187820.1| diguanylate cyclase/phosphodiesterase [Xanthomonas perforans
           91-118]
 gi|325543149|gb|EGD14592.1| diguanylate cyclase/phosphodiesterase [Xanthomonas perforans
           91-118]
          Length = 705

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L  + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLHTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--VVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++ + L    L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFVSVNVSPRQLRSGALIDTVAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPADMVKLIAA 704


>gi|327188359|gb|EGE55576.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 783

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/799 (19%), Positives = 299/799 (37%), Gaps = 34/799 (4%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
              +    + GI+ G   +    L + ++   S            VL  ++        L
Sbjct: 1   MNNSVENRFFGIVCGALLVFVAPLFVLFLFLSSERADKEIRDHISVL-LVANAQALAKPL 59

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            +L    +    A      +   +         +   + +       +  ++     +  
Sbjct: 60  WDLDEESVTQISATVVSQGAIVKVEVRDQSGQLDVSQSTIPRSFDGKLVQVSRAIIYNTI 119

Query: 303 Y-PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
             P    SI+    A  +           +  +  AVL +       I      +    R
Sbjct: 120 DGPKNLGSISVYYPALGLFSGLKQEEVVFISIFIFAVLTVFGTA--LIGNRFFVIQPLMR 177

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI---- 417
           L   I     +G    +       + +   +       + S+ +    A   + DI    
Sbjct: 178 LTAAIEATRQLGSRHHVDWQSNDEMGRLARSFNEMQTKLESEEKELKFAHRRTTDIYNLT 237

Query: 418 ---VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              ++  D V      +       G    ++ G  RN+   +  N RD F          
Sbjct: 238 PAMLFSLDEVDRITAVSDYWLLATGYDRAAVIG--RNFADLVTANTRDKFVK-----RRR 290

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +    +    D +   ++I +   + ++      + +  D+TE K S +     A 
Sbjct: 291 AESGMAVTVKFVCLDGRTMDVLI-MESEAGADAHDRLSLSVMTDVTELKASEDRNHRQAI 349

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+ NRQ F   L + +  +          + +D+D++K IND +G A GD  L+ 
Sbjct: 350 TDHLTGLLNRQGFEAVLDSKIAAADAAGQ-ELACLFVDLDRFKWINDNMGHAAGDKALIE 408

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L  R+   L   D  ARL G+ F I+L +++   +       +      P       + +
Sbjct: 409 LVERLKTHLAPSDEAARLGGDEFAILLPAKDAERRAKAMCEQIASIFETPFAPD---MHL 465

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
           +ASIG A +     T++E+L+ +++AMY  K  G N  + F          R  I+ ++ 
Sbjct: 466 SASIGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDNVMLDRARSRAEIEANIE 525

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             +  S       PI+ L    I G EAL++ +HP+ G +  +E +  AEE   I  +  
Sbjct: 526 AGLAESWFEAFLQPIVNLNGRSIAGFEALMRLNHPQKGLMPPTEIISAAEETGKIVRVGN 585

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++E+   ++      + M   ++ IN +        L   + A+  +    P RI +  
Sbjct: 586 VIMEKAIANLAKISRISGMQDSYLAINFSPLQFE-PALPARLAAIAGRHGIRPERIVVEI 644

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+V+M +  + R+++  LR+ G  + LDDFGT  S LSYL   P D +K + S      
Sbjct: 645 TEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRAIN 704

Query: 893 -------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                  +K   ++  I  ++  +  T+IA+ I  E + + L +MG DY Q      P  
Sbjct: 705 DGDDDVRQKSRMLIEGITTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRPQH 764

Query: 946 FNSI-LKLLKERFPLVKNT 963
              +  +L+  +  + + +
Sbjct: 765 AAKLIEELMTPQSAVARAS 783


>gi|217978837|ref|YP_002362984.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Methylocella
           silvestris BL2]
 gi|217504213|gb|ACK51622.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Methylocella
           silvestris BL2]
          Length = 868

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 223/436 (51%), Gaps = 7/436 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A+ D LTG+PNR +FL  L+ +   +    N     + +D+D++K IN  LG
Sbjct: 407 AKTEMTRLAYTDLLTGLPNRAAFLQELSEVFAAAKRGAN-PFAFLYLDLDRFKDINATLG 465

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            ++GD +L ++  R+   L+  D+ AR+ G++F ++L +  +  ++A++A ++    A P
Sbjct: 466 HSIGDALLKAVAARLSGGLREGDLFARIGGDKFAVVLTNLADPAEVANYATSICGLTAAP 525

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
            ++   EI +T SIG + + S    + ++++ A++A+Y AK  G N    +         
Sbjct: 526 FDIGAAEIHITTSIGVSIYRSVMTKAEDLMREADVAVYEAKDVGRNQCRFYSEALDLAMR 585

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           DRV + EDL  A+E  EL L Y P + L    I G+EAL++W+HP  G +    F+ +AE
Sbjct: 586 DRVSVIEDLHAAIERGELELYYQPQVELPSGVITGVEALLRWNHPTRGLLGPGLFIPLAE 645

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKT 821
           ++ +I  I  ++L  + R +  WR +   PPI + +N+++  L    +  + +   ++  
Sbjct: 646 KMGLITPIGRWVLTEVCRQLRIWRAEGINPPI-MAVNLSAAQLAVEFDFEQHLAQALAVG 704

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P+ I+L  +E+V+M   +     + RLR +G+ + +DDFGT  S L YL     D +
Sbjct: 705 GFDPTTIELELTETVLMQTVQAQVSAIDRLRALGVRIAIDDFGTGYSSLEYLRDYRVDRI 764

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K     ++      +   I+R+ I +A+ +   +IA+ +      + L    C  IQ  +
Sbjct: 765 KIAREFVSRLPSDPRSATIVRATIGLARELGIEVIAEGVETAGQAEFLMASRCRRIQGYY 824

Query: 940 VASPLGFNSILKLLKE 955
              P       ++L+ 
Sbjct: 825 FGRPAPAAQAAEMLRR 840


>gi|237746855|ref|ZP_04577335.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS]
 gi|229378206|gb|EEO28297.1| GGDEF domain-containing protein [Oxalobacter formigenes HOxBLS]
          Length = 1937

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/584 (22%), Positives = 251/584 (42%), Gaps = 19/584 (3%)

Query: 373  GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
              LV I+ +      + V     F +   +  ER    +  +  +V++W +       +P
Sbjct: 1356 MYLVFIMDIDDKKRAEEVALQKEFLEKQRTADERYKTIIEQTDTLVFEWIMETGSRYLSP 1415

Query: 433  DI-ATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +I     G      +    R+    IH +D       L + + + R  ++   R +  D 
Sbjct: 1416 EIPLRFAGRYDERDLLHIWRDD-GVIHADDLS-MLDELKAAI-HERSHVEMVARFKKRDG 1472

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
             + W  I +  + +  G   RYIG  NDI  + +S++ +   A  D LTGI N Q+F DR
Sbjct: 1473 HYAWHRITLSCLYDREGKPRRYIGTINDIDNETRSVKALKYRAEFDVLTGIYNMQTFYDR 1532

Query: 551  LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
             + +++ +      +  ++ +DID++K IND+ G+  GD +L ++   + E LK   +  
Sbjct: 1533 ASQMMESA---PGQQFYIVRLDIDRFKVINDLYGLEEGDCLLKTIAAMLSEKLKERAVYG 1589

Query: 611  RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            R+SG+ F   +  + +  ++ +F   +  ++A    L  + I    S G     + +   
Sbjct: 1590 RISGDIFCACV--DCSREQVIEFVQEIAAALAE-YPLASKVIP---SFGICRVDNVRTPI 1643

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
            + +   A LA+   K         +             I+ ++  A+EN E  L + P +
Sbjct: 1644 NVLCDWANLALKTVKGSFYPFYAFYDETLRDQILSEKKIENEMDAALENREFVLYFQPKV 1703

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
             +    IVG E L++W HP  G I   +F+ + E    I  ++ F+ E+    +  W DQ
Sbjct: 1704 DIATSRIVGAEGLVRWQHPSEGTIPPDQFIPLFERNGFIIQLDEFVWEQACVCLRKWIDQ 1763

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                P+ I +N++   + D  L   + +LI K   SP  ++L  +ES+   N +     +
Sbjct: 1764 -GREPVPISVNVSRMHIHDEGLSAKLASLIGKYNLSPKWLELELTESIFFENADLLVRTV 1822

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
              L+K G   +LDDFG   S L+ L  +P +T+K +         T +   ++   I +A
Sbjct: 1823 QNLQKEGFRFSLDDFGAGYSSLNMLKSLPVETIKLDRGFFNEVIVTSRGKTVVAHTISLA 1882

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            K +   +IA+ +      + L   GC   Q  + + P+      
Sbjct: 1883 KALNIDVIAEGVENREQTEFLLGAGCSLAQGYYYSPPVSATEFE 1926



 Score =  180 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/310 (20%), Positives = 134/310 (43%), Gaps = 11/310 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + +  +  +Q +    S DI +++D + D +       ++ G         +R 
Sbjct: 95  AIHKLRRTVDFEKRKQDIISSLSEDITFEYDYLSDTIVFADKYRSVFGSDPA-----MRF 149

Query: 452 WLPYIHIND-RDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +   +  ND  DN            R   +   + R+   + ++ W       + + NG 
Sbjct: 150 FRKRLLDNDWIDNLTETFREQFCEMRPSSEEPADARINTKNGEYRWFSFFCTRLEDENGK 209

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            ++ +G+  DI  QKK    +L  +  D +TG+ N+ +  + + + +  +    +    +
Sbjct: 210 PVKAVGLIRDIDSQKKERLRLLDKSRLDPMTGLLNKIAAEEMIRSAMAAA--TPDNMGVL 267

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++IDID +K +ND  G   GD+V++ + +++    +  DI+ R+ G+ F + +    ++ 
Sbjct: 268 LMIDIDSFKNVNDTWGHLAGDEVILQIVQQLRRTFREHDIIGRVGGDEFHVFMRDVKDAA 327

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            + + A  +  ++    +       VT SIG A  T    T +E+ + A++A+Y AK  G
Sbjct: 328 FVDEKARGLCLAVQNLFSGENDGRVVTISIGIA-ITGENKTYNEIYRQADIALYRAKASG 386

Query: 689 GNHVESFRVS 698
            N    +   
Sbjct: 387 KNRFVFYGQE 396



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 9/180 (5%)

Query: 365  DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             I   + V  L     +  F + + V       +    + +R ++A+  +   +++ D+ 
Sbjct: 1069 YIWISSRVFFLCEDNTVSAFILARDVTVQKRIEEERHIESQRFNMAIRNTYSEIYETDLE 1128

Query: 425  RDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTI-----LDSFVGYRRGR 478
            R+        + +L +  G  +  + ++    IH  DR  F        L          
Sbjct: 1129 RNLTRLIYQNSDVL-VPPGE-NEKLEDFAERCIHPEDRLYFTAQIMDKNLSERFARGETE 1186

Query: 479  LQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            +  E+R   +D Q+H++   I P+  S      + +    DI+E+KK  +        D 
Sbjct: 1187 IHGEYRRLGSDKQWHFVSAIIVPLFGSYEKRPQKGLCFIRDISEKKKLEKQRRIAEQYDQ 1246



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASG 443
            ++ V       Q +     R +     + DI  +  +  +   R               G
Sbjct: 959  LRDVTRLKTMEQTVRGLERRYNAVFRQTVDIFTEISLETETYSRTFF--QAGKTDSFTHG 1016

Query: 444  SMHGPIRNWLPYIHINDRDNF------RTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
                   ++L  +H +DR+        + + +++    +      +R+  ++ ++ W+  
Sbjct: 1017 QYPRDFSHFLELVHPDDREKVNACRNMQALCEAYGNEEKTNFCL-YRIL-SNGEYIWISS 1074

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            R+      +  +  +I +A D+T QK+  E     + +
Sbjct: 1075 RVF-FLCEDNTVSAFI-LARDVTVQKRIEEERHIESQR 1110



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 15/164 (9%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             L     I+ +            D      A+  +   ++  D+  DR+  +P      
Sbjct: 817 GSLHILFHIRDITEKKQEEWRRKQDENSFIAALQSNYAEIYHIDLESDRI--SPLYYNKD 874

Query: 439 GLASGSMHGPIRNW-----LPYIHINDRDNFRT--ILDSFVGYRR--GRLQYEFRVR-AA 488
            +   S       +        +H +D    R    L++           + E+R R   
Sbjct: 875 QIPIPSGSMSFTEFVRKRAADRVHPDDMQAVREFYSLENLRKKTALFDVPELEYRKRQTI 934

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           + ++ W++  +RP+ + NG     +    D+T  K   + +   
Sbjct: 935 EGEYRWVVATVRPVQDKNGK---AVLFLRDVTRLKTMEQTVRGL 975



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 454  PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-----RAADNQFHWMIIRIRPMS-NSNG 507
              IH  D   F    D  +  +  R   E+R+        D  +HW  + + P+  + +G
Sbjct: 1294 NMIHPEDAPRFLAFFDLDLVRKSFRDGQEYRIAEFRKLWLDGTYHWASLTVFPLPADESG 1353

Query: 508  DILRYIGIANDITEQKKSLE 527
            D +  + I  DI ++K++ E
Sbjct: 1354 DEMYLVFIM-DIDDKKRAEE 1372


>gi|302879972|ref|YP_003848536.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Gallionella capsiferriformans
           ES-2]
 gi|302582761|gb|ADL56772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Gallionella capsiferriformans
           ES-2]
          Length = 714

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 214/441 (48%), Gaps = 12/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +++ + I   AF D LTG+PNR   LDRL   +  ++T +     +++ID+DK+K IN
Sbjct: 272 ELRQAAKKINELAFFDQLTGLPNRVLLLDRLKQAMS-ASTQNRCHIALLLIDLDKFKTIN 330

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAI 635
           + LG  +GD +L  +  R+   ++  D +ARL G+ F ++  + N           +   
Sbjct: 331 ETLGHDMGDQLLKQVAERLSHCVRSGDTVARLGGDEFVVMSANLNTHEALAATQAENIGE 390

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++    +        T SIG   +   +     +LK AELAMY +K  G N +  F
Sbjct: 391 KILAALNRTYHFDAIPHHSTPSIGVTLFCGEQTDVEILLKQAELAMYKSKEAGRNALHFF 450

Query: 696 RVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        ++ DL +AV+  +  L Y P I   D+++ G+EAL++W  P    +S
Sbjct: 451 DQDMETKVTRYANMENDLRVAVQQQQFILHYQPQI--ADQQLTGVEALVRWQKPDGSMVS 508

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AEE  +I  + L++LE   R +  W +Q     + I +N+++      +  + 
Sbjct: 509 PADFIPMAEETGLILPLGLWVLETACRQLAIWANQPERAHLTIAVNVSAHQFRQADFVDQ 568

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +I  +  +P R+KL  +ES+++ N E     +  L+  G+S +LDDFGT  S LSYL
Sbjct: 569 VLEVIKNSGANPHRLKLELTESLLLTNVEEIIEKMIALKLTGVSFSLDDFGTGYSSLSYL 628

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +          AI R+II +A+++   +IA+ +  E     L    
Sbjct: 629 KRLPLDQLKIDQSFVRDVLIDPNDAAIARTIITLAQSLSLGVIAEGVETEAQRAFLASAD 688

Query: 932 CDYIQDSHVASPLGFNSILKL 952
           C   Q    + PL  +     
Sbjct: 689 CHAYQGYLFSKPLRIDDFETF 709


>gi|205352622|ref|YP_002226423.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272403|emb|CAR37283.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 660

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIARWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFG+  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGSGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLAQFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|78048135|ref|YP_364310.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036565|emb|CAJ24256.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 705

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 228/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L  + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLHTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--VVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++ + L    L E +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFVSVNVSPRQLRSGALIETVAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFVADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPADMVKLIAA 704


>gi|148358754|ref|YP_001249961.1| sensory box protein [Legionella pneumophila str. Corby]
 gi|296106799|ref|YP_003618499.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148280527|gb|ABQ54615.1| sensory box protein [Legionella pneumophila str. Corby]
 gi|295648700|gb|ADG24547.1| sensory box protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 768

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 219/433 (50%), Gaps = 6/433 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K   E +   A  D LT + NR+ F D L   +  +  + N    +++ID+D +K IND
Sbjct: 313 LKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRN-NSSLALLLIDLDNFKAIND 371

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD++L     R+  L++  D+L+R+ G+ F +I ++  +       A  +   +
Sbjct: 372 TFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNEL 431

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  + ITVT SIG + +     T+ ++L+ A+LAMY AK+ G N  + +      
Sbjct: 432 ISPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGY 491

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S      ++  L  A++N E  L Y P   L++ EI+G E L++W++   G +S +EF+ 
Sbjct: 492 SQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNKALGGVSPNEFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  ++ ++L++    I+ W +Q N   +   INI+   L + +  + ++ ++ 
Sbjct: 552 VAENTGLITELSQWVLQKSCIQIMHWANQYNKM-LSFSINISPVQLTNPQFPKILEKILQ 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  Y    ++L  +E+ +MG+ +    +L  +  +GI L+LDDFG + S L+ L  +P D
Sbjct: 611 EYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSSLNRLKTLPID 670

Query: 880 TVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K + + ++    +   ++    II +A  +  +I+A+ I     +K L    C + Q 
Sbjct: 671 SLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQG 730

Query: 938 SHVASPLGFNSIL 950
             ++ PL  N   
Sbjct: 731 FLLSKPLTVNEFT 743


>gi|78047485|ref|YP_363660.1| putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035915|emb|CAJ23606.1| putative c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 766

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/441 (28%), Positives = 222/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 327 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 385

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 386 DSQGHAAGDGLLRDIALRVNDQITATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 444

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 445 IASPLPVGHMTVHPSASIGVAMFPEDGHDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 504

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A+   +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 505 RMAQERVALEAELRQAIGRDQLQLHYQPQMHSAAPHALYGVEALLRWNHPQLGAVSPARF 564

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  +N ++L R    +  WR Q  +P   + +N+++       +   +  L
Sbjct: 565 LPVAEEQGMMPQLNAWVLRRACEQVADWR-QRGVPVARVSVNLSASGFESPRMLPDLLKL 623

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++    PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 624 IAELGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 683

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 684 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 743

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 744 QGYLFSRPLPAQALEAWLGAQ 764



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q         + A+ GS   +   D+    +        + G     + G    + L
Sbjct: 41  AGEQPDQRRARLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVL 100

Query: 454 PYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    R   D+    R   L     V   D    W+ +   P+ ++N     
Sbjct: 101 TRAQSDQSEVARVRDRADALQHTRADLL-----VYRKDGTPLWISLNFNPIYDANHAPSH 155

Query: 512 YIGIANDITEQKKSL 526
           Y+ +  DIT+ K   
Sbjct: 156 YVAVLTDITDTKMHE 170


>gi|317486688|ref|ZP_07945505.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922071|gb|EFV43340.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1011

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/561 (20%), Positives = 240/561 (42%), Gaps = 24/561 (4%)

Query: 398  QGIFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +  D  R   A++ S D  ++  ++       +P +    GL    +      W   +
Sbjct: 463  EALEYDSLRLYNALVKSTDSYIFVSNMKTGIFRYSPSMVEEFGLPQSIVENAAAVWGSKV 522

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +D+  F          R      E+R +    ++ W+  R     + +G+   + G  
Sbjct: 523  HPDDKAAFMEANQIIADGRSDFHCVEYRAKNRKGEWIWVRCRGYLERDGDGEPSLFAGFI 582

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             ++ ++ K           D++TG+ N+  F + + ++L+           ++V+ +D +
Sbjct: 583  TNLGQKNKI----------DHVTGLFNKLKFEEDIESMLEKRPEHP---LHLLVLGLDGF 629

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K IN++ G + GD++L  + +RI  +L     + RL G+ FGI +  E    ++ +   +
Sbjct: 630  KHINELYGKSFGDEILRVIGQRIQGMLPLSASVYRLDGDEFGITVSGER--FEMMELYRS 687

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            + +S         ++   T S G AS+       +E+ + A  ++ +AK  G N +  F 
Sbjct: 688  LSESFRSQQEYDGKKYFCTISAGSASYPEDASGYTELSEYASHSLKYAKKLGRNRIVFFS 747

Query: 697  VSSFRSDRVMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
             +    +   ++  E L  ++E       LVY P I +    +VG EAL +W   K+G +
Sbjct: 748  RAILEQEMRSLELVELLRESIERQFEGFELVYQPQIAVDTRHVVGAEALARWTCTKYGPV 807

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            S  EF+ + E+  +I     ++    A    +W      P   I IN++   ++ N +  
Sbjct: 808  SPGEFIPLLEQSGLIIPFGRWVFREAAAQCKAWTKS--RPDFKISINLSYLQVVSNSMVP 865

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             +   + +   SP+ + + F+ES ++    R R +   +R +GI + +DDFGT  S L  
Sbjct: 866  FINNTLERLDLSPANLTVEFTESCMIRENARIRAVFESIRNLGIRIAMDDFGTGYSSLGM 925

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L   P D VK + + +     ++     +  ++ +  ++   +  + +  E +   +  M
Sbjct: 926  LKNSPADVVKIDRTFVRDILTSQFDATFIHFVVALCHDVNIKVCLEGVEREEEFDRVRSM 985

Query: 931  GCDYIQDSHVASPLGFNSILK 951
            G D+IQ      P+  +   +
Sbjct: 986  GLDFIQGFLFGKPVPPDVFER 1006



 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 103/286 (36%), Gaps = 25/286 (8%)

Query: 410 AVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIH------INDRD 462
           A+      ++  D   D  +     +  +  L         +     ++        DR 
Sbjct: 173 AMDQVKVGLYVTDPHTDAILYMNKFMKDVFKLEHPEGKICWQVLQSGMNGRCPFCPVDRL 232

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                 +          ++E R       +         M  ++G ++       DIT+ 
Sbjct: 233 MADANQNQV-------FRWEERNTL---TWRIYDNSDSLMRWTDGSLVHLQQSV-DITD- 280

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 +   A  D LTG+ NR++    L   L     +++    V + D+D+ K++NDV
Sbjct: 281 ---SLRLHKEANYDELTGLLNRRAGKAALADALVRLDREES-SLIVGMFDLDRLKEVNDV 336

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  L ++ + +   L  PD+  RLSG+ F ++  +  N   +      + + + 
Sbjct: 337 YGHGEGDRALRTIAQEMQRSLHAPDMCFRLSGDEFVVLFHN-TNRHAVDGLVAGVLERLK 395

Query: 643 MPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHR 687
                L    ++  S G         +T +E+L  A+ +MY  K R
Sbjct: 396 ARREQLGLPYSLEFSFGCFKVMPGCGMTVTEVLSKADESMYEQKKR 441


>gi|315497940|ref|YP_004086744.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
 gi|315415952|gb|ADU12593.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
          Length = 739

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 220/435 (50%), Gaps = 13/435 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR  F DRL    +           VM + +D++K +ND LG 
Sbjct: 296 EARAKHMALHDGLTGLPNRTLFTDRLNQATERLRRHGG-SVAVMCVGLDRFKDVNDTLGH 354

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD+++    ++IG +++  D LARL G+ F  I+ ++ ++   A  A  + + +   +
Sbjct: 355 SAGDELIRHSAQKIGSMIRAGDTLARLGGDVFV-IIQTDTDAHSAAALAKRVLEGLKGQV 413

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L    +  + SIG      S I ++E L+ A+LA+Y AK +G +    F +    + ++
Sbjct: 414 TLESGPVYSSCSIGVTLLQESDIEAAEALRQADLALYRAKEQGRSQYAFFEIEMDATIKL 473

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  L  A+    + +VY P +   +  IVG+EAL +W HP+ G IS + F+ +AEE
Sbjct: 474 RKLLETGLREAIHVEAIEVVYQPQVDH-NGRIVGVEALARWSHPQRGPISPAYFVPLAEE 532

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++  +   ++ R   D   W      P + + IN+++  L  +     ++ ++ +T  
Sbjct: 533 CGLMMDLGTLIMRRALIDSKRW------PGLKVAINVSATQLRSSRFLPELKDMLRETGV 586

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  I++  +E +++ + + ++  L  LR++G S+ LDDFGT  S LSYL   P D +K 
Sbjct: 587 EPRSIEIEITEGMLLNDDQPTQNTLNALRQMGFSIALDDFGTGYSSLSYLSRYPVDKIKI 646

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++         A++R+II +AK +  +I+A+ +  +     L + GC  IQ    +
Sbjct: 647 DRSFVSNLGVDPDAEALIRAIIKLAKALHLSILAEGVETKAQSHILRQAGCAIIQGYLFS 706

Query: 942 SPLGFNSILKLLKER 956
            P+  + I  +++ +
Sbjct: 707 KPVDRSEIDIMMEGQ 721


>gi|87118919|ref|ZP_01074818.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Marinomonas sp. MED121]
 gi|86166553|gb|EAQ67819.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Marinomonas sp. MED121]
          Length = 834

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/509 (24%), Positives = 238/509 (46%), Gaps = 18/509 (3%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           ++  IH + +   +TI+  F      +     +++  D +++ +      MS    +  +
Sbjct: 330 FVRQIHKHIKTPIKTIITRFNEVEADQFNQVIQLKRND-EWNTIEKAFNKMSKRLDETYQ 388

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
                    E +     +   A  D LTG+ NR      +   ++ +  D   +  ++ +
Sbjct: 389 ---------ELQAERIKLNHLAHHDVLTGLANRLQIYQDIEHCINKAKQDKG-KFGLLFL 438

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG A+GD +L  + +R+ E +    I+ARL G+ F II   E++   + 
Sbjct: 439 DVDQFKNVNDNLGHAMGDQLLKQIAKRLRETVASDGIVARLGGDEFMIIYPDEDHLGTLQ 498

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D A  +   +  P  L    +   +SIG   +     T   ++ NA++AMYH+K +G N 
Sbjct: 499 DRAEELNDILNQPFELNMTSVLAGSSIGVCLYPQHGDTLETLVSNADVAMYHSKRKGPNA 558

Query: 692 VESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +  ++SS     + +   L  A++ +E ++ Y P   +   EI G EALI+W+HP+ 
Sbjct: 559 YSVYESKMSSDAHKLLQLSAGLRKAMDKNEFFIQYQPQYDISTNEITGAEALIRWEHPEM 618

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDN 808
           G I    F+ IAE+  +I  I+ ++ + + + I  W++Q          IN +++  L  
Sbjct: 619 GLIQPDNFLPIAEKTGIITDIDTWVFKHVTQQISQWKEQGVELKGKEFSINFSARKFLSP 678

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L E +  ++ ++    + I +  +E  ++ N E     +  L+  G  + +DDFG   S
Sbjct: 679 HLAEELSHILQESNCPSNCIIIEITEQDLITNLELCSEAIVELQYHGFKVAIDDFGVGYS 738

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            L+YL  +P   +K + S +            AI+ +II +A N+  T+IA+ I  E   
Sbjct: 739 SLNYLKNLPAQCLKIDKSFVADLDADDSNSGSAIISAIINLANNMSLTVIAEGIENERQQ 798

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K L +  C   Q  H++ P+  + + +L+
Sbjct: 799 KMLIQQDCSRGQGYHLSYPISASELSELM 827


>gi|327398652|ref|YP_004339521.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Hippea maritima DSM 10411]
 gi|327181281|gb|AEA33462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Hippea maritima DSM 10411]
          Length = 1024

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/561 (23%), Positives = 240/561 (42%), Gaps = 15/561 (2%)

Query: 403  DGER-QSLAVLGSGDI---VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            D ER  ++ +         V+  D     V     +  + G ++  +          +  
Sbjct: 466  DKERFLNIVLTAINIGFEFVFIVDKNLKFVYINDSLKKVSGYSNKDVINKSLIDF-LVKD 524

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D+D+ + ++              +R    D +    +  I P    N  +  +IG+   
Sbjct: 525  EDKDSIKNLITKLKTGESISKAITYR--KKDGKLESFLATITPHK-ENDSVEYFIGVGKQ 581

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT +   L  +      D+LTG+ N ++F++ +   L  +  ++ L   + VI+   +K 
Sbjct: 582  ITPENDLLNELNKLLHYDSLTGLLNSKAFVESIEKFLIRAKKEE-LIGAIAVINPLSFKN 640

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IN+  G   G+ +L  + +R+       DI+A+L  +RFGIIL               + 
Sbjct: 641  INEAFGFETGNQILTQVAQRLKSATFNYDIVAKLESDRFGIILKDLKKEEDSLIALERIL 700

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFR 696
            K +A P  +    I ++ +IG + +     ++ E+L  A++A+  A+ RG          
Sbjct: 701  KELAKPYRINNSNIILSFNIGLSLYPKDGTSTKELLNKAQIALADARSRGEDRIGFFRKN 760

Query: 697  VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +  +  + +K +L  A+ N+E    Y P +   +  I+G EALI+W       I  SE
Sbjct: 761  FETKATKLIKLKAELESALHNNEFKPYYQPCVD-RNGLIMGAEALIRWI-KNDKIIPPSE 818

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+   E+  +I  +    +E +   I   + +  +PP  I IN++ K L   +L E +  
Sbjct: 819  FISQLEQSELIIKVEDKFIESVVSFISQTKKE-GIPPYPIAINLSIKSLNSKDLFERVIL 877

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             I +       +K    E   +   E    L+ R R+ GIS ++DDFGT  S LSYL  +
Sbjct: 878  KIKQNKIDTRYLKFEIVERAFLEKFEHLNKLILRFREKGISFSVDDFGTGYSSLSYLAKL 937

Query: 877  PFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P D +K + S +   ++++   I+RSII +AK +    IA+ +  +     L  MGC   
Sbjct: 938  PVDFLKIDMSFIRALSDEKTRNIVRSIIFLAKELNIQTIAEGVETKEQFDILKEMGCSCF 997

Query: 936  QDSHVASPLGFNSILKLLKER 956
            Q      P+  +    LL ER
Sbjct: 998  QGYLFYRPMPESDFKSLLMER 1018



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 65/184 (35%), Gaps = 16/184 (8%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459
             D    + A+  + +     +     +     ++ I G +   + G     +    H  
Sbjct: 173 QKDMALFNEALEKTHEWAIITNRDGVILKANKAVSDISGYSRNELLGKKPNIFKSGYH-- 230

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  +  + ++ +  +      +F  +  +    ++   I P+   NG++ R++ ++ +I
Sbjct: 231 DKKFYENLWNTILSGKT--FSAKFTNKTKNGSIFYLDSLITPIL-HNGEVYRFVDLSRNI 287

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T++    E +   +       + N    L  ++T +            + V    K+ +I
Sbjct: 288 TKEVIYSERLKFQSS------LYNILFHLTNISTQIKSKREYLKKLTKLFV----KFAQI 337

Query: 580 NDVL 583
           N   
Sbjct: 338 NISF 341


>gi|330891181|gb|EGH23842.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 734

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 227/486 (46%), Gaps = 12/486 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   D  +           I G +     G   R    
Sbjct: 255 ESRQMQEKLHLAATVFESTAEGVLITDTNQRINAVNRAFTEITGYSESEAIGQTPRLLAS 314

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   + ++         G  Q E   R    + +   + I  + N       ++ 
Sbjct: 315 GQH--DSAFYASMWHQLAA--DGHWQGEISNRRKSGELYPSWLTINAVRNKANLTTHFVA 370

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL + L  S    +L   V+ +D+D
Sbjct: 371 VFADISSLKHAQARLDYQAHHDPLTGLPNRTLFESRLQSALLHSEESGSL-GAVLFLDLD 429

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L            A
Sbjct: 430 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDVDTVARLGGDEFIVLLPGLLQPSDAQAIA 489

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 490 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 549

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +     +  S+R+ ++++L  A++ ++L L Y P I L+   ++G EALI+W+HP +G++
Sbjct: 550 YTCDLTTQASERIALEQELRRALDRNQLSLAYQPKISLLTHTLIGAEALIRWNHPTFGDV 609

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  + +  WR     P   + +N+A   L    L E
Sbjct: 610 PPEHFIPLAEENGMILQIGEWVLEQACQQMGKWRK-TCQPFGPVSVNLAGAQLRQTNLVE 668

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L++     P  ++L  +E+ +M   + +  +L +L+K+G+ L +DDFGT  S LSY
Sbjct: 669 HIEQLLADNGLEPGCLQLEITENFIMSQTQEALAVLHKLKKLGVQLAIDDFGTGYSSLSY 728

Query: 873 LGYIPF 878
           L  +P 
Sbjct: 729 LKRLPL 734



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +        I G + 
Sbjct: 122 LVIVRDITQRKQAQQQLQLSEEKFAKAFHASPDGLAITRQQDGMLLEVNEGFCRITGYSE 181

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ + DR      L      R     +  R+R  D       +   P
Sbjct: 182 AYCLEHSTFDLGVWVDLGDRSRLIEQLKRHGSVR----DFRARLRNVDGSIKLCELSSHP 237

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  D L  + IA DITE ++  E +   A 
Sbjct: 238 IVIAGDDCL--LTIARDITESRQMQEKLHLAAT 268


>gi|289807206|ref|ZP_06537835.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 544

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 241/552 (43%), Gaps = 21/552 (3%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNF--RTILD 469
           +  ++   D                GL    + G    + ++       R+    R  ++
Sbjct: 1   ANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSR-----REAVASRHYIE 55

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +F        + E  ++    Q  ++       + S  + +  I    DITE++++ E +
Sbjct: 56  NFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGTDITEERRAQERL 114

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D +TG+PNR +  + +   +  +         ++ +D+D +KKIND  G   GD
Sbjct: 115 RILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLDLDNFKKINDAYGHMFGD 171

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L +++  +   L+   +LARL G+ F +++    +   +   A  +   +  P  +  
Sbjct: 172 QLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEAVASRILTRLRQPFRIGL 230

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMI 707
            E+    +IG +        S  +++ A+ AMY+AK  G      F   ++    D   +
Sbjct: 231 IEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVFSPEMNQRVFDYHWL 290

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A+EN +L + Y P I     E+  LEAL++W  P+ G I   EF+  AEE  +I
Sbjct: 291 DTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLEFISYAEESGLI 349

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  +++  + R I  WRD+     + + +N +++ L D  L   ++  +    +    
Sbjct: 350 VPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTLFTALKQALYDLNFEYCP 407

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S LS L   P D VK + + 
Sbjct: 408 IDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAF 467

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P+ 
Sbjct: 468 VRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMP 527

Query: 946 FNSILKLLKERF 957
             S  +  K   
Sbjct: 528 AVSFERWYKRYQ 539


>gi|186685521|ref|YP_001868717.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Nostoc punctiforme PCC 73102]
 gi|186467973|gb|ACC83774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Nostoc punctiforme PCC 73102]
          Length = 1224

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/569 (20%), Positives = 236/569 (41%), Gaps = 14/569 (2%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            + + A     + +F + E   + +    D V   D         P   +++G +  S  G
Sbjct: 657  RDITALKQIEETLFQEKELAQVTLQSIRDAVITTDAFGRIQYLNPVAESLIGCSEASAKG 716

Query: 448  PI-RNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             +       +H   R+  +  ++  +   R   L     +    +Q   +     P+ N 
Sbjct: 717  VLLEEVFRIVHETTREKVKNPIEQALQENRIVSLANHTVLITGRDQEIAIQDSAAPIRNR 776

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             G ++  + + +D+T+ +     +   A  D LTG+ NRQ F  R+   L ++  D  + 
Sbjct: 777  EGQVIGAVMVFHDVTQNRLLSRQLSWQATHDALTGLVNRQEFERRVEQALHVAKLDYQV- 835

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             T+  +D+D +K +ND  G   GD++L  +T  + E ++  D LAR  G+ FG++L    
Sbjct: 836  YTLCYLDLDHFKIVNDTCGHVAGDELLRQITVLLQEKVRKTDTLARFGGDEFGLLLTQCT 895

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                +      +           E+  ++  SIG     ++  + +E++  A+ A Y AK
Sbjct: 896  LEEALRVANNLLSCVQEFRFVWQEQVFSIGVSIGLVVIDTNSESLAEIISTADAACYTAK 955

Query: 686  HRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLE 739
            +RG N V       +    +  ++     +  A+E+    L    I      D+     E
Sbjct: 956  NRGRNRVYVAQTDDQERLQQRGQMQWVGRISQALESDWFCLYVQRIAAIIPTDQNGDHYE 1015

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             L++    +   +    F+  AE   ++  I+ +++  + +   +W    +       IN
Sbjct: 1016 VLLRLRDEQGKLVLPMAFIPAAERYNLMHLIDRWVIRTLFK---NWSRVVDNKQSIYAIN 1072

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++   + D+   + +    +    SP  I    +E+V + N  ++R  + +L+++G    
Sbjct: 1073 LSGSSINDDRFIDFLHEQFTLHPISPQHICFEITETVAIANLLKARQFIQKLQRMGCRFA 1132

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            LDDFG   S  +YL  +P D +K +GS +          AI+ +I  ++  +    IA+ 
Sbjct: 1133 LDDFGAGMSSFAYLKSLPIDYLKIDGSFIRNIVENPVDNAIVTAITRISSVMGIQTIAEF 1192

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +  +  ++ +T +G DY Q   +A P   
Sbjct: 1193 VENDAILERITALGIDYAQGYGIAVPHPL 1221



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 1/141 (0%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
               +       + +       + A   +    W+W +  ++   + +   I GL     
Sbjct: 402 RQAALNKRKQAEEELRRSETLLATAQKIAHLGSWEWHLGSEKQIWSAETFRIFGLNPAES 461

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 +L  ++  DR   +  L   +         E+R+   D    ++  R     ++
Sbjct: 462 VPTQATFLQMLYPEDRPVLQRHLLQAIANGN-PFNLEYRIVQPDGSLRYLESRAEVAYDT 520

Query: 506 NGDILRYIGIANDITEQKKSL 526
            G  +R  G   DITE+K++ 
Sbjct: 521 QGKTVRLYGAILDITERKQAE 541



 Score = 70.4 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 58/177 (32%), Gaps = 7/177 (3%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
              +         +    G +V   +++  T ++ V  T   S+ +  + ++       +
Sbjct: 242 SARLKWLHFRSTPRQLQDGRVVWDGLVVDVTDLKRVEETLRKSEALLEESQQV------A 295

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
               W++++   ++T +  +  +       +    +  L      D        +  +  
Sbjct: 296 RLGNWEFELATGKITWSKQLFDLFNRDPELLEPNYQENLQLYCPEDAGKLAQATERAMST 355

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                Q   R         ++        N++G ++R  G A D+TE++ +L     
Sbjct: 356 -GESYQLILRASPIYGSTIYIEGIGHAEFNADGKVIRLYGTAQDVTERQAALNKRKQ 411



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 4/144 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  I  +         +     R    V    + +  +                 G +  
Sbjct: 528 YGAILDITERKQAEIALKQSEIRYRAIVEDQTEFIARYLPDGTITFVNQAFTRYFGRSPE 587

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      + P I   DR+     L + +         E RV   D    W     R + 
Sbjct: 588 QLIDSC--YQPIIFEADRERV-AQLIAAMNADNPVAIIENRVILED-SVRWTQWHNRMLF 643

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +  G  + +  +  DIT  K+  E
Sbjct: 644 DEQGCFIEFQTVGRDITALKQIEE 667



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 76/286 (26%), Gaps = 24/286 (8%)

Query: 265 LIIFLFMYLHWNRWHAKVGYITF-----SGIACIAILFCMSFYYPMVTASIA------RI 313
           ++ F      + ++        +             L  +++Y   +             
Sbjct: 1   MLEFWKSLFAYKQFIPHGHCYLWKPELVGLHIVSDSLIALAYYSIPIALVYFVRKRQDFP 60

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
                +L+ T+ I        +   L  P +       I    AI        + P +  
Sbjct: 61  FNWIFLLFATFIITCGTTHLMDIWTLWYPTYW--LSGCIKAITAIISLYTASELIPLIPK 118

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD---------IVWDWDIV 424
            L L          Q +       +      + +   +    D         ++ + D  
Sbjct: 119 ALALPSHAQLEIANQELEREISIRKQAELALQEREAMLRRISDNLPNGAIYKVIRELDGS 178

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                 +  I  ++ +    +              D    +  +D            + R
Sbjct: 179 DRFDYISAGIERLMEVRVEDVLKDSSLLYRQFIPEDVPLLQAAVDESRRN-FSVFDIQLR 237

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           ++    +  W+  R  P    +G ++ + G+  D+T+ K+  E + 
Sbjct: 238 IQTPSARLKWLHFRSTPRQLQDGRVV-WDGLVVDVTDLKRVEETLR 282


>gi|242241092|ref|YP_002989273.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya
           dadantii Ech703]
 gi|242133149|gb|ACS87451.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Dickeya
           dadantii Ech703]
          Length = 678

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 141/681 (20%), Positives = 263/681 (38%), Gaps = 33/681 (4%)

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGY--ERAVLLIPAWILIFIWFIGLWMAI 358
                    +  I+     +     +   G   Y  +R  L         +      M  
Sbjct: 1   MLIVSWDTLMIAISWLVAFIASFVALDMAGKVAYCEKRVALFWLTAAGTAMGMGIWAMHF 60

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              L   +    +   L L  + +   +   +++    +        R  LA    G  V
Sbjct: 61  IGMLAMHLPIT-VSHNLNLTAVSLLVAIFSSLISLHLTASAPQLTRARLVLAAQTFGGGV 119

Query: 419 WDWDIVR-------DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
                         D +        +  +    +   I  WL +     R      L + 
Sbjct: 120 VCMHYTGVAAIAVADGIHWNGWWVAVS-IPVAFVASGIAMWLAFSLRL-RQRLFARLAAA 177

Query: 472 VGYRRGRLQYEFR----VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ----- 522
           +         ++     +                +S  +  IL  + + + +  Q     
Sbjct: 178 LVIGAAIAAIQYIGFSPLAHYHGDSVNQRELSVWVSAISLLILGAMLVISMLDAQWRASR 237

Query: 523 -----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
                +++ + +   A  D LTG+PNR      L + L  +         +M +D+D +K
Sbjct: 238 LTDSLRQANDQLARLAMHDALTGLPNRMQLERELESCLHHARQHRQT-FALMYMDLDGFK 296

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G  +GD +L  +T R+ E L     LAR+ G+ F  +L+ +    + A  A  +
Sbjct: 297 IVNDAWGHYLGDQLLAGVTTRLREYLGPGMTLARIGGDEFV-LLMRDCGEEQAAALADKL 355

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            ++I  P +     + VT S+G + +     TS ++  NA+ AMY  K  G N    +  
Sbjct: 356 VQAIEQPFHQSGYTLRVTLSVGISLFPRDGATSHDLRLNADTAMYSIKQTGRNGWIFYSP 415

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S          + + L  A+  ++  L Y P  R  +  I G EALI+W HP+ G +   
Sbjct: 416 SFSHHGNHQPELLQALPKALALNQFRLWYQPKYRPPNGPIHGFEALIRWQHPQKGLLLPD 475

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE+  +I AI  +++    R +  W  Q       + INI+      + L   + 
Sbjct: 476 KFLPMAEKTGLIIAIGEWVINEACRQLQVWHQQ-GQVHWTVAINISPVQFDQHNLVSVIS 534

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++K    P  + L  +ESV M N E+S  +L  L ++G+ +++DDFGT  S L  L  
Sbjct: 535 DALAKYQIPPYMLTLEITESVAMRNLEKSLNILHELDRLGVKVSIDDFGTGYSNLLSLRR 594

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + + +       K   ++ +II MA+++   ++A+ +      + LTR+GC 
Sbjct: 595 LPARELKIDRTFVKDLLLHNKNAVVVTTIIEMARSMNLEVVAEGVETPEQQELLTRLGCY 654

Query: 934 YIQDSHVASPLGFNSILKLLK 954
            +Q   +A P+  + I + L 
Sbjct: 655 SLQGFLLAPPMPPDHINEQLA 675


>gi|152981029|ref|YP_001354036.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
 gi|151281106|gb|ABR89516.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille]
          Length = 641

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 125/442 (28%), Positives = 214/442 (48%), Gaps = 7/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + ++     L  A  D LTGIPNR  F +         A        +  +D+DK+K 
Sbjct: 196 IGQLEQEKGRALLQASHDYLTGIPNRMLFYEL-AAAELARARRSRKLYGMFFLDLDKFKL 254

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG AVGD +L  + RR+ E L+  D+LARL G+ F +++    +   IA  A  + 
Sbjct: 255 INDTLGHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVMLISEMTSENDIAKVAAKLV 314

Query: 639 KSIAMPIN-LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + +  P   L   +I ++ SIG A +         +L +A+ AMYHAK  G      F  
Sbjct: 315 EVVREPFPDLDGHDIEISPSIGIALYPRDGQNVETLLTHADAAMYHAKAAGAGTYRFFDS 374

Query: 698 SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S   S      +      A+ + E  L Y P + L +  +VGLEAL++W HP+ G I  +
Sbjct: 375 SLNASSARDVELLTRFKRAIRDDEFCLHYQPRVELQEFGLVGLEALVRWQHPEHGLIFPN 434

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AEE  +I  +  ++++   R I  WR     P + + IN++ K L D+ L E + 
Sbjct: 435 DFITLAEENDLIVLLGRWVIDAACRQIADWRAAGL-PLVPVAINVSPKQLKDSALLETVM 493

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +++    P  +++  +E   + + + +  +L +LR  G+ + LDD+GT  S L  L  
Sbjct: 494 ETLARYQIEPGLLEIEITEGCFIEDFDTANRVLEQLRANGLRIALDDYGTGFSGLKNLKK 553

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +           I+ S I +A N+   ++A+ +  +  +  L   GCD
Sbjct: 554 LPIYAIKIDRSFVRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCD 613

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q  +   P+    I+++L+ 
Sbjct: 614 QVQGFYFKRPVAAAGIVEILRR 635


>gi|218549020|ref|YP_002382811.1| RNase II stability modulator [Escherichia fergusonii ATCC 35469]
 gi|218356561|emb|CAQ89184.1| modulator of Rnase II stability [Escherichia fergusonii ATCC 35469]
 gi|325497442|gb|EGC95301.1| RNase II stability modulator [Escherichia fergusonii ECD227]
          Length = 663

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 241/565 (42%), Gaps = 13/565 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +          V  +   +   D   +            GL    + G    +  ++
Sbjct: 103 ARDLMHGLSFAEQVVSEANSAILILDSRGNIQRFNRLCEEYTGLKEHEVIGQ-SVFKLFM 161

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R  +D F        + E  ++    Q  ++       S S  + +  I   
Sbjct: 162 SRREAAASRRNIDVFFRSGNA-WEVERWIKTRKGQRLFLFRNKFIHSGSGKNEIYLICSG 220

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++ + E +   A  D +TG+PNR +  + +   +       N +  ++ +D+D +
Sbjct: 221 TDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAI---VQTTNAQVGIVYLDLDNF 277

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L ++   I   L     LAR  G+ F ++     +   +   A  
Sbjct: 278 KKVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPD-TSQGALEAMASR 336

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   + +P  +   E+    S+G A        S  ++++A+ AMY AK  G      F 
Sbjct: 337 ILTRLRLPFRIGLIEVQTGCSVGIALSPLHGHDSDSLIRSADTAMYTAKEGGRGQFCVFS 396

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    + + +  +L  A+EN +L + Y P +     E+  LEAL++W  P+ G I  
Sbjct: 397 PEMNQRVFEYLWLDTNLRKALENDQLLIHYQPKVTWR-GEVRSLEALVRWQSPERGLIPP 455

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+  AEE  +I  +  +++  + R +  WR +     + + +NI+++ L D  +   +
Sbjct: 456 GEFISYAEESGLIVPLGRWVILDVVRQVAKWRSKGIN--LRVAVNISARQLADQTIFTYL 513

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ +  +    I +  +E  ++ N   +  ++ +  ++G  + LDDFGT  S LS L 
Sbjct: 514 KQVLHELDFEYCPIDVELTERCLLENEALALSVIQQFSRLGAQVHLDDFGTGYSSLSQLA 573

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G 
Sbjct: 574 RFPIDAIKLDQAFVRNIHKQSVSQSLVRAIVAVAQALNLQVIAEGVESVKEDAFLTKNGV 633

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
           +  Q    A P+   +  +  K   
Sbjct: 634 NERQGFLFAKPMPAVAFERWYKRYL 658


>gi|52841402|ref|YP_095201.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628513|gb|AAU27254.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 755

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 217/433 (50%), Gaps = 6/433 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K   E +   A  D LT + NR+ F D L   +     + N    +++ID+D +K IND
Sbjct: 300 LKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANGQRN-NSSLALLLIDLDNFKAIND 358

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD++L     R+  L++  D+L+R+ G+ F +I ++  +       A  +   +
Sbjct: 359 TFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNEL 418

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  + ITVT SIG + +     T+ ++L+ A+LAMY AK+ G N  + +      
Sbjct: 419 NSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGY 478

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S      ++  L  A++N E  L Y P   L++ EI+G E L++W++   G +S +EF+ 
Sbjct: 479 SQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIP 538

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  ++ ++L++    I+ W  Q N   +   IN++   L + +  + ++ ++ 
Sbjct: 539 VAENTGLITELSQWVLQKSCIQIMHWASQYNKM-LSFSINVSPVQLTNPQFPKILEKILQ 597

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  Y    ++L  +E+ +MG+ +    +L  +  +GI L+LDDFG + S L+ L  +P D
Sbjct: 598 EYQYPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDDFGKEYSSLNRLKTLPID 657

Query: 880 TVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           ++K + + ++    +   ++    II +A  +  +I+A+ I     +K L    C + Q 
Sbjct: 658 SLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQG 717

Query: 938 SHVASPLGFNSIL 950
             ++ PL  N   
Sbjct: 718 FLLSKPLTANEFT 730


>gi|16760177|ref|NP_455794.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25318946|pir||AI0655 conserved hypothetical protein STY1349 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502472|emb|CAD01618.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 660

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 245/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 104 AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 159

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 160 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 213

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 214 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 270

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F +++    +   +  
Sbjct: 271 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEA 329

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 330 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 389

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 390 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 448

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 449 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 506

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 507 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 566

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    ++ R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 567 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLARAIVAVAQALNLQVIAEGVENAKEDAFLT 626

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 627 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 655


>gi|77748615|ref|NP_642213.2| c-di-GMP phosphodiesterase A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 728

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 224/441 (50%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 290 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 348

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 349 DSQGHAAGDGLLRDIALRVNDQVAATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 407

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 408 IASPLPVGHMTVHSSASIGVAMFPEDGQDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 467

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A++  +L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 468 RMAQERVALEAELRQAIDRDQLQLHYQPQMHSAAPHTLYGVEALLRWNHPQLGAVSPARF 527

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 528 LPVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLSDLLRL 586

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++T   PS + L  +ESV++         L  +R+ GISL+LDDFGT  S LS+L  +P
Sbjct: 587 IAETGVQPSDLTLELTESVMLSGQPGVLENLHAIREAGISLSLDDFGTGYSSLSHLHRLP 646

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +     +E   A+  S++ + +++   ++A+ +  E     L  +GC+ +
Sbjct: 647 IDELKLDMSFVRDIEHSEDARALTTSVLRIGEHLRKHVVAEGVENEAQRLFLADLGCEVL 706

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL   ++   L  +
Sbjct: 707 QGYLFSRPLPAPALEAWLDAQ 727



 Score = 76.1 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWL 453
              Q         + A+ GS   +   D+    +        + G     + G    + L
Sbjct: 4   AGEQPEQRRSRLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVL 63

Query: 454 PYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    R   D+    R   L     V   D    W+ +   P+ ++N     
Sbjct: 64  TRAQSDQSEVARVRDRADALQHTRADLL-----VYRKDGTPLWISLNFNPIYDANHAPSH 118

Query: 512 YIGIANDITEQKKSL 526
           Y+ +  DIT+ K   
Sbjct: 119 YVAVLTDITDTKMHE 133


>gi|260771802|ref|ZP_05880720.1| C-di-GMP phosphodiesterase A-related protein [Vibrio metschnikovii
           CIP 69.14]
 gi|260613094|gb|EEX38295.1| C-di-GMP phosphodiesterase A-related protein [Vibrio metschnikovii
           CIP 69.14]
          Length = 673

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 217/442 (49%), Gaps = 9/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++K+   +   A+ D LTG+ NR   L  LT  ++ +    +    +  +D+D++K IN
Sbjct: 229 DKEKAQAKLNHLAYYDGLTGLANRGLLLQTLTQAIEYAHQRQHT-GALFYLDLDRFKTIN 287

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD ++ S+  R+          AR+ G+ F II+ S     +I+  A  +   
Sbjct: 288 DSLGHTIGDTLIQSIAHRLQAWANHSYTAARVGGDEFAIIIPSLP-YQQISSIAQQLLAL 346

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P ++   ++  TASIG A++ S  ++S ++ + A+ A+Y AK  G N    +     
Sbjct: 347 LANPHSIDGHQLYCTASIGIATFPSEGVSSLDVFRQADTALYRAKTCGRNKYLFYEPEMQ 406

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + I++ L  A++  +L L Y P +     +++G+EALI+W HP+ G +    FM
Sbjct: 407 AQVETFLDIEKGLHEALQFHQLELYYQPQVNEQ-HQLIGVEALIRWHHPEKGLLPPGIFM 465

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINIASKDLLDNELCEGMQA 816
            +AEE   I  I  +++E+    +  W+ +  +P  F  + INI+          E + A
Sbjct: 466 PVAEETGQILPIGRWIIEQACYQLSQWQKRGVLPEHFRRLAINISPLQFSQASFVEHIVA 525

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + ++  S   I+L  +E +++ N + +   + +L+   + L +DDFGT  S L YL  +
Sbjct: 526 TLQQSGISGHYIELEITEGLLLENIDEAIQKIAQLKNQSLHLAIDDFGTGYSSLRYLKDL 585

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +T         AI+ +I+ +AK ++  +IA+ +  + +++ L  MGC  
Sbjct: 586 AVDVLKIDRSFVTQLHLDPSAQAIVDTILLIAKRLDLQVIAEGVEDKFELEALKTMGCTQ 645

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q      PL    + +     
Sbjct: 646 FQGYLFDKPLTCQELEQRFTHH 667


>gi|157375526|ref|YP_001474126.1| hypothetical protein Ssed_2389 [Shewanella sediminis HAW-EB3]
 gi|157317900|gb|ABV36998.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 741

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 130/581 (22%), Positives = 249/581 (42%), Gaps = 24/581 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SM 445
              LA+    +      ER +          +   D+    +   P    I  L SG   
Sbjct: 171 AARLASLAIERSRALQFERLTGNIFNHLPLGLVITDLHWTVLNANPAFYAITELTSGLET 230

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                 +      +  D+    L +     +   Q E     A  +  ++ + +      
Sbjct: 231 KFDPVQFFKRSGEDTLDSMLASLAT-----KEAWQGELVGTRASGESFYLEVTVNMFKER 285

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
               L Y  + +DITE+K++   I   A  D+LT + NR      +   ++  +      
Sbjct: 286 GSQELCYSWLFSDITERKRASALIDYQANYDSLTQLANRNYLFKIVQAEIESDSLSPG-- 343

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              M++D+D +K+IND LG   GD +LV + +RI    K   ++ARL G+ F + L    
Sbjct: 344 FGFMLMDLDNFKQINDTLGHDKGDQLLVEVAKRIESSTKGRALVARLGGDEFALFLPGMV 403

Query: 626 NSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +   A A+  S+ +P  L  ++ +  + SIG A +    +   ++L  A+ AMY +
Sbjct: 404 KESDLVRQAHAINDSVVLPYLLGQDKRVLTSISIGIARFPEDAMNLEQVLNCADQAMYIS 463

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F         +   +  DL  A+E +   L Y PI+ L + +IV  E L+
Sbjct: 464 KSEGRNCFHFFTQQMQLDAELTAKLHNDLKFALETNAFELYYQPIVCLEENKIVRAEVLL 523

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W H +   IS   F+ +AE   +I  +  ++ +     ++ ++ +       + IN++ 
Sbjct: 524 RWKH-EGAFISPEVFIPVAESSGLIVELGHWVRKEAMASLLEFKRKGIEIG--LSINVSM 580

Query: 803 KDLLDNELCEGMQALISKTLY-------SPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            +   + L + +   I+               I L  +ES++M   +     L +LR +G
Sbjct: 581 YEFWSHALQDCLVTSINDIAVDLTTDSFPFDGITLEITESLLMKQHQHLIDALQKLRDMG 640

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           I + +DDFGT  S LSYL + P D +K +   +   GS+ K+ A++++I  ++  ++  +
Sbjct: 641 IEIAVDDFGTGYSSLSYLSHFPVDHIKIDKCFIQESGSSVKQQALVKAITTLSHALDLHV 700

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           IA+ +  E +++ +     + +Q  +   P+   ++L LL+
Sbjct: 701 IAEGVETEEELQFVRSADIEAVQGYYFYKPMPKQNLLTLLE 741


>gi|294624427|ref|ZP_06703116.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294664931|ref|ZP_06730246.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292601276|gb|EFF45324.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292605301|gb|EFF48637.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 705

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L  + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLHTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--VVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++ + L    L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFVSVNVSPRQLRSGALIDTVAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAA 704


>gi|116253212|ref|YP_769050.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257860|emb|CAK08958.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 694

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 221/442 (50%), Gaps = 10/442 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+   + ++E     +  D LT + NR +F + L+ +++    D      V+  D+D+
Sbjct: 236 IIDMQSTQAAVERYRHLSLHDPLTNLANRAAFNEHLSALVNKPK-DMTANIAVLSFDLDR 294

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+INDV G A GD VL ++  R+  +++    +AR+ G+ F  ++            A 
Sbjct: 295 FKEINDVHGHAAGDAVLRAVAERLSGIMQNGQFVARVGGDEFVAVMCDYFVRSDAKGLAQ 354

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            M   IA PI      +TV +SIG +++     T  ++L  A++AMY AK    N +  +
Sbjct: 355 RMLDEIARPIEWNGHALTVGSSIGISTYPGQADTLDDLLSQADIAMYRAKSTATNSICFY 414

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +     +R  +  ++   +   E  L Y      +  +IVGLE L++W HP  G IS
Sbjct: 415 EPSMDQAARERNALASEMREGLARGEFELFYQQQNDTVTRDIVGLEVLLRWRHPVRGYIS 474

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAE+   I  +  ++L     +  +W++     P+ I +N+A + L DN L + 
Sbjct: 475 PVEFIPIAEKTGFIIELGEWVLRAACAEAATWKN-----PLRIAVNVAPQQLGDNRLPQI 529

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++ +T    +R+++  +ES ++ + + +   + RL+ +G+ + +DD+GT  S LS L
Sbjct: 530 VHQILLETGLPAARLEIEITESGIIADHQHALQAIRRLKALGVKVAMDDYGTGYSSLSTL 589

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + + + G  + ++  AI+RS + +A +++  ++A+ +  E  I  L R G
Sbjct: 590 QSFPFDKIKIDRAFVDGVVTNKQSAAIVRSTLILAASLDIPVLAEGVENEDHIDFLRREG 649

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C  +Q      P   + I  ++
Sbjct: 650 CLQVQGFLFGKPGPRSGIEAIV 671


>gi|297569021|ref|YP_003690365.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924936|gb|ADH85746.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 592

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 218/441 (49%), Gaps = 11/441 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
             L+ +      D LTG+PNR+  L++L   + + A  +     ++ ID+  ++ +ND L
Sbjct: 149 NLLDEVRSLNTYDALTGLPNRRYLLEQLERDIAIHARAEQY-GALLGIDLGNFRTVNDTL 207

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----NNSLKIADFAIAMR 638
           G  +GD +LV  +RR+G  ++  D +ARL  + F +IL          ++K  + A  +R
Sbjct: 208 GNDIGDLLLVETSRRLGFSVRETDTVARLGSDEFAVILDHLGPDYNQAAVKAEEIAKKIR 267

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++I    +L   E  VT  IG   +        E+L  A +A Y AK  G N +  F  +
Sbjct: 268 RTINRQFSLKGHECHVTCCIGVCIFGRRDELFDELLIRANVATYQAKKSGPNTIRFFDEA 327

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R   + +L  A++ ++L L + P          G EAL++W HP  G ++ +E
Sbjct: 328 MQSALEERARQEAELRQALKENQLLLYFQPQFNG-TGRPRGAEALVRWQHPSRGLVAPAE 386

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I+ I   +L +    +  W++Q  +    + +NI++      +  + ++ 
Sbjct: 387 FIPLAEETGLIQPIGRMILAQACSRLKEWQEQPELADQVMAVNISAHQFHQADFVDQVRE 446

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +   P  +KL  +ES ++ +   +   +  L ++G+S++LDDFGT  S LSYL  +
Sbjct: 447 ALTTSGVRPQGLKLELTESALLADLRDAISKMQTLVEMGLSISLDDFGTGYSSLSYLKTL 506

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + S +    S     AI+R+I+ MA  +E  ++A+ +  E  +  L +  C  
Sbjct: 507 PVNQLKIDRSFIANVTSDPSDAAIVRAILAMAAELEIEVVAEGVEDERQLAFLQQHNCRI 566

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A P+  +   +L+K+
Sbjct: 567 FQGFLFARPMPADDFCQLVKK 587


>gi|187923206|ref|YP_001894848.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187714400|gb|ACD15624.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 784

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 213/434 (49%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L    D++  ++  R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEYDLLTGLRNRYATLQTLRH--DVAQQNNLGRLAILFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  ++   +    A A  ++ A P 
Sbjct: 386 NAGDIVLQMTASRLAAAVGEGGALSRIGGDEFVVVIKGDDVEKRAVALAEAAAEAFAKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +          
Sbjct: 446 EVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPQLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALAEGQLFLTYQPKIDLTRRCITGFEALVRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 566 TGLIVPIGDFVIETACRQLALWQQQGYDT-LSLAVNISAVQFWRGDLYETISHAIEESGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 SARRLELEITETAMMEYPELVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFIQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+   +I  LL+ 
Sbjct: 745 RPVPVEAIPALLER 758


>gi|134099702|ref|YP_001105363.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133912325|emb|CAM02438.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 698

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/570 (22%), Positives = 243/570 (42%), Gaps = 18/570 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           V               R S  +  +   V   D           +  ++      +    
Sbjct: 131 VRDDSEAHARQQRSYRRFSDLLALAPVGVCFVDDNDRVREVNNALCRLVRHPRAEVLEMT 190

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGD 508
                 +H  D     T  ++             R +  +D +     +        +G 
Sbjct: 191 GA--DLLHPRDGGGGLTSENALSEEEPETPVSRSRVLLRSDGEPIHCDVYSALSVQDDGS 248

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++ +  D+TE+    E +      D LTG+PNR+   + L             R  V
Sbjct: 249 -HFWLVVFQDVTERIHQAEALQHQLTHDALTGLPNRRGVDELLDNA---------GRLAV 298

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  DID +K+IND LG A GD+++V++ +R+   L     +ARLSG+ F I     +   
Sbjct: 299 LFCDIDNFKRINDSLGHAAGDELIVTVAQRLRGELGEECAVARLSGDEFLIASTDVDAVG 358

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  +   + M + +    + V+AS+G A +  S  +  ++L+ A+ AM+ AK  G
Sbjct: 359 GLRVLADRVAGMLRMVVPVRGHLVRVSASVGAAMFPESGTSGEDLLRFADAAMFRAKRHG 418

Query: 689 --GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                +    +++  ++++ ++E L  A+    L L Y PI+   D  +V  EAL++W H
Sbjct: 419 PGRVVLADPELTASLAEQMGLEEQLGEALRTDGLRLHYQPIVD-RDRTVVSAEALVRWPH 477

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S    + IAE+  ++  ++L++L    RD + W  QA   P+ + +N++ +   
Sbjct: 478 PRMGLLSPDVILPIAEQGNLLHELDLWVLRAALRDAVGWPRQARGRPVRVSVNLSGRFSA 537

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +  + + A+++ +     R+ L  +E+ ++     +R  +  L ++G+S  +DDFGT 
Sbjct: 538 EVDFLDAVGAILADSGIDLHRVVLEVTETSLVELSAAARDAMHALIRLGVSFAVDDFGTG 597

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ L  +P   +K +   ++G    E   AI+RS I MA   +   +A+ +      
Sbjct: 598 YSSLARLKDLPAQVIKLDRQFISGLETQEADRAIVRSAIDMAHATDRRCVAEGVETAAQY 657

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             L  +G D  Q    + PL       ++ 
Sbjct: 658 HLLNELGVDAHQGWLFSRPLPQADFRAVVA 687



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 33/171 (19%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF---RTILDSFVG 473
            V+  D      +  PD   + G  S  + G         +  +       +  L+    
Sbjct: 34  AVYSLDAEGRVASWNPDAQRLKGYRSEEILGRH---FSVFYPPELAAVGYPQEELERAAE 90

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                +   +R+R  D    W  + I    +  G +  ++ +  D +E     +      
Sbjct: 91  A-GVHIDEGWRIR-KDGTRFWAYLIIAARRSEQGVLQGFVKVVRDDSEAHARQQRSY--- 145

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI-DKYKKINDVL 583
                      + F D L                V  +D  D+ +++N+ L
Sbjct: 146 -----------RRFSDLLALA----------PVGVCFVDDNDRVREVNNAL 175


>gi|21243116|ref|NP_642698.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108634|gb|AAM37234.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 705

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 228/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L  + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLHTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILARLSGN 615
              + +  ++  DID +K++ND LG   GD+ L+    RI   +        ILAR  G+
Sbjct: 303 RSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--VVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+ +N++ + L    L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFVSVNVSPRQLRSGALIDTVAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAA 704


>gi|206601586|gb|EDZ38069.1| Putative diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptospirillum sp. Group II '5-way CG']
          Length = 1157

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/576 (21%), Positives = 242/576 (42%), Gaps = 16/576 (2%)

Query: 390  VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHG 447
             +A   F +      +R   A+  S                      ++G +     +  
Sbjct: 582  RMAFLRFDEQNHIRLQR--TAMESSRSPFLIASPDGSVEWANAAFLCMIGQSQDDKNVLS 639

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                +       D +   T+ +          + E   RA           + P+ +   
Sbjct: 640  LPDLFPE---PVDTNPPMTLFEILKAGL--FFEGEIPGRARSGDAFITETIVSPILDGQQ 694

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             I   +    DIT +K   + I   A  D+LTG+ N  +F++ L      +   +N +  
Sbjct: 695  QISHMLIHMKDITLEKIQEKAIWELAHVDSLTGLMNWNAFMETLDREFRQAKE-ENRKMA 753

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            V  +D+D +K+IND +G   G+  L ++  R+ +     D +AR+ G+ F ++     + 
Sbjct: 754  VFYLDLDGFKEINDTMGHETGNVFLRTIAGRLRQCPSLSDSVARIGGDEFVLLCKKTGDF 813

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +      +   ++ P+ +  R    T SIG A +      S+++++ A++AMY AK  
Sbjct: 814  QTLQSEIRTLTDLVSRPVEIGGRSFQTTVSIGVAFYPDDADKSADLVRKADIAMYQAKKS 873

Query: 688  GGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                    +    R       +  L  A+ +  ++L++ P I L +  + G+EAL++W +
Sbjct: 874  KKGWRFFDQEMEERIQERYRNELSLRQALRSGHIFLMFQPQIDLANRRLRGIEALVRWKN 933

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +   ++   F+ +AEE  +I  +   + E+    +  W +   +    + +N++ +   
Sbjct: 934  AEGVVLTPKSFIALAEESGIILELGEIVFEQSFETLHRW-ETLGLKDFRLSVNVSPRQFW 992

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                 EG+   I +   +  R+ L  +ES++M NP+     L  LR +G+ + +DDFGT 
Sbjct: 993  SKNFWEGLSGRIVRQPEAGKRLCLELTESLLMQNPDEIGNRLSDLRSMGVRIAIDDFGTG 1052

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S L+YL   P D +K     + G    E+   I+R+I+ MA+++   ++ +      +I
Sbjct: 1053 YSSLAYLSRFPVDEIKVPQEFVLGMKNHEQDRMIVRTIVQMAQSLGIDLVGEGAETRAEI 1112

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILKLL--KERFP 958
              L  +GC  +Q   +A P+   ++   L   ER+P
Sbjct: 1113 DMLFGLGCTTLQGYGLARPMSLENMEDFLLHPERWP 1148


>gi|315498706|ref|YP_004087510.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf
           sensor(s) [Asticcacaulis excentricus CB 48]
 gi|315416718|gb|ADU13359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Asticcacaulis excentricus CB 48]
          Length = 763

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 23/441 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      I   A  D+LTG+PNR  +  RL      +      +  + +ID+D++K++N
Sbjct: 312 EKDAFQARIQYLAHHDSLTGLPNRGFYQTRLAEEAARATR-QKTQLALHLIDLDRFKEVN 370

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G  VGD+VL+++   + +L    D+LARL G+ F  + +      +    A A+ K+
Sbjct: 371 DTMGHMVGDEVLITVAETLRDLASPDDVLARLGGDEFVFLQVGVTQRAQAEAKAEALVKA 430

Query: 641 IAMPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +   +      +   V AS+GFA +     T   + ++A++A+Y AK  G     +F  +
Sbjct: 431 LQAEMHAQFGPQAPDVGASLGFALYPDEGPTLDRLTRHADMALYKAKTDGRGCWRAFDAT 490

Query: 699 SFRSDRVMIKEDLCL----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              + R   + +  L    A     L LVY P   L     +G EAL++W HP+ G I  
Sbjct: 491 MAEALRRRRRLEADLRDALAHGQRGLSLVYQPQFCLNLNRFIGYEALVRWTHPELGAIPP 550

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I A+  ++L R      +W        + + +N++   + + +L   +
Sbjct: 551 CDFIPVAEEAGLITALGQWILSRALETAATWPAH-----LNLAVNLSPLQICEGDLTRYV 605

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q  + +T + P R++L  +E V++ N +R+  +L +L+ +G+ + +DDFGT  S LSYL 
Sbjct: 606 QQELVRTGFRPQRLELEVTEGVLIENTDRALHVLRQLKGMGVRIAMDDFGTGYSSLSYLQ 665

Query: 875 YIPFDTVKFNGSLMTGSTEK-----------RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             PFD +K + S + G T               AI+R++I MA  I   +IA+ +  +  
Sbjct: 666 TFPFDLIKIDRSFVEGLTPSPDRKMHKHGIPAEAIVRAVIGMAHAINIPVIAEGVETQEQ 725

Query: 924 IKELTRMGCDYIQDSHVASPL 944
           +  L  MG D +Q   +  P 
Sbjct: 726 MDLLRDMGADAVQGYLIGRPQ 746



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           AV      +   D     +        +LG ++  + G     L   H +  +    IL 
Sbjct: 43  AVDAIDTAMVITDTSGRFLYVNAAFRNLLGFSASELIGKTLGDLCQRHSDSCEQLEDILT 102

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +R G+   E  V        W+      M++      R I I +DIT  K
Sbjct: 103 EV--HRNGQRSGELLVHNRHGHPMWVSFSATIMADDAHR-RRVIAIVSDITYAK 153


>gi|152992025|ref|YP_001357746.1| hypothetical protein SUN_0429 [Sulfurovum sp. NBC37-1]
 gi|151423886|dbj|BAF71389.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 635

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 223/444 (50%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI E+K+    +   A  D LT IPNR  F   +   +    T   L+  +M ID+D++
Sbjct: 197 KDIEEEKR---KLDYQAHYDFLTDIPNRNKFYSEIQQWIQK-DTAHTLQFALMFIDLDRF 252

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND LG  VGD+VL  ++RRI + +      +R+SG+ F I+     +  ++   A  
Sbjct: 253 KRVNDSLGHDVGDNVLKVISRRIQKNIPKKAFFSRISGDEFTILFPHGEDKHEVKAMAKR 312

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   I  PI L      ++ASIG + +  + I  ++++K A+  M+ AK  G    + + 
Sbjct: 313 LIAVIEEPITLQNHTFYLSASIGISCYPQNSIYYADLIKYADTTMFEAKKVGRGTYKFYD 372

Query: 697 VSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                     V++  D+  A  +    L Y P I      IVGLEAL++WDHP  G I  
Sbjct: 373 KEMTHHINEVVLMDSDIHAAFASDTFLLYYQPQIDTRTNAIVGLEALVRWDHPTLGFIYP 432

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AEE  +I A++ F+L++  + I++W++Q    P  I  N ++K L      E +
Sbjct: 433 DAFIPYAEETGVIIALDYFILQKGMKQIVTWKEQGLKIP-RISFNFSTKHLQQKGFVEFI 491

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L+++T      I+L  +ES +M N + +  +L  L+ +GI++ +DDFGT  S L+YL 
Sbjct: 492 ETLLAETRCKGQWIELEITESHIMENIDEAIRVLQALKDLGITIAIDDFGTGYSSLTYLK 551

Query: 875 YIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +         + I  +II +  ++   +IA+ +   +    LT+ GC
Sbjct: 552 RLPADKLKIDKSFIEQIPNNSVEMTITNAIIHIGNSLGLQVIAEGVETSLQEIYLTKQGC 611

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
            YIQ       +    I  LLKE+
Sbjct: 612 HYIQGYLHYEAISKEDIESLLKEK 635


>gi|291008294|ref|ZP_06566267.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 701

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/570 (22%), Positives = 243/570 (42%), Gaps = 18/570 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           V               R S  +  +   V   D           +  ++      +    
Sbjct: 134 VRDDSEAHARQQRSYRRFSDLLALAPVGVCFVDDNDRVREVNNALCRLVRHPRAEVLEMT 193

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGD 508
                 +H  D     T  ++             R +  +D +     +        +G 
Sbjct: 194 GA--DLLHPRDGGGGLTSENALSEEEPETPVSRSRVLLRSDGEPIHCDVYSALSVQDDGS 251

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++ +  D+TE+    E +      D LTG+PNR+   + L             R  V
Sbjct: 252 -HFWLVVFQDVTERIHQAEALQHQLTHDALTGLPNRRGVDELLDNA---------GRLAV 301

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  DID +K+IND LG A GD+++V++ +R+   L     +ARLSG+ F I     +   
Sbjct: 302 LFCDIDNFKRINDSLGHAAGDELIVTVAQRLRGELGEECAVARLSGDEFLIASTDVDAVG 361

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  +   + M + +    + V+AS+G A +  S  +  ++L+ A+ AM+ AK  G
Sbjct: 362 GLRVLADRVAGMLRMVVPVRGHLVRVSASVGAAMFPESGTSGEDLLRFADAAMFRAKRHG 421

Query: 689 --GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                +    +++  ++++ ++E L  A+    L L Y PI+   D  +V  EAL++W H
Sbjct: 422 PGRVVLADPELTASLAEQMGLEEQLGEALRTDGLRLHYQPIVD-RDRTVVSAEALVRWPH 480

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S    + IAE+  ++  ++L++L    RD + W  QA   P+ + +N++ +   
Sbjct: 481 PRMGLLSPDVILPIAEQGNLLHELDLWVLRAALRDAVGWPRQARGRPVRVSVNLSGRFSA 540

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +  + + A+++ +     R+ L  +E+ ++     +R  +  L ++G+S  +DDFGT 
Sbjct: 541 EVDFLDAVGAILADSGIDLHRVVLEVTETSLVELSAAARDAMHALIRLGVSFAVDDFGTG 600

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ L  +P   +K +   ++G    E   AI+RS I MA   +   +A+ +      
Sbjct: 601 YSSLARLKDLPAQVIKLDRQFISGLETQEADRAIVRSAIDMAHATDRRCVAEGVETAAQY 660

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             L  +G D  Q    + PL       ++ 
Sbjct: 661 HLLNELGVDAHQGWLFSRPLPQADFRAVVA 690



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 33/171 (19%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF---RTILDSFVG 473
            V+  D      +  PD   + G  S  + G         +  +       +  L+    
Sbjct: 37  AVYSLDAEGRVASWNPDAQRLKGYRSEEILGRH---FSVFYPPELAAVGYPQEELERAAE 93

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                +   +R+R  D    W  + I    +  G +  ++ +  D +E     +      
Sbjct: 94  A-GVHIDEGWRIR-KDGTRFWAYLIIAARRSEQGVLQGFVKVVRDDSEAHARQQRSY--- 148

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI-DKYKKINDVL 583
                      + F D L                V  +D  D+ +++N+ L
Sbjct: 149 -----------RRFSDLLALA----------PVGVCFVDDNDRVREVNNAL 178


>gi|307720854|ref|YP_003891994.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978947|gb|ADN08982.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 661

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 221/434 (50%), Gaps = 7/434 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+  E +   + +D L+G+ NR S +++L  ++     D N    ++ +D+D +K IND
Sbjct: 228 LKQEQEELYNLSTKDPLSGLYNRLSLVEKLNWLISKGKRDKN-EFAMIFLDLDNFKNIND 286

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L  ++  +    +  DI++RL G+ F ++L    +  KI + A  +++ +
Sbjct: 287 SKGHEFGDKILKYISDILLNATRNNDIVSRLGGDEFVVVLPDYKDENKIVEIAQRLKEKL 346

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SS 699
           + P  +   +  +TAS+G A +         +LKNA++AMY +K  G N+ + F    + 
Sbjct: 347 STPFKIDNEDYQITASMGIAIYPKDGDNVQTLLKNADIAMYKSKELGKNNFQFFTDAINK 406

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +++ ++  +  A+  +   L Y P + +   +IVG EALI+   P  G I   +F+ 
Sbjct: 407 AVQEKISMQRIIKDALSQNHFKLFYQPKVDIKTNKIVGCEALIRLIDPIEGLIPPYQFIS 466

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE   I  +  ++++  A  I  W +   +  I + IN++     D  L + +Q    
Sbjct: 467 IAEENLSIIPLGEWIIQEAASQIKKW-EHTPLRNIKVSINLSGVQFKDPYLLQKLQTYTQ 525

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     S+  +  +ESV++ N  +   ++  ++++GISL+LDDFGT  S LSYL  IPFD
Sbjct: 526 E--IDRSKFDIELTESVLIDNFNKRLDIIKGIKELGISLSLDDFGTGYSSLSYLKDIPFD 583

Query: 880 TVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           T+K + S +    T+  +  +  II +A+++   ++A+ +  E  +K L  + C+  Q  
Sbjct: 584 TLKIDKSFIDNLYTKDDLTFVNMIIGIAEDLALNVVAEGVETEEQLKLLKEINCELYQGY 643

Query: 939 HVASPLGFNSILKL 952
             + P+      +L
Sbjct: 644 LCSKPVVPKEFEEL 657


>gi|238911908|ref|ZP_04655745.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 664

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 247/569 (43%), Gaps = 25/569 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 108 AQELSFAEQ----IVSEASSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 163

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 164 R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 217

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 218 ICAGTDITEERRTQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 274

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F I+L +  +   +  
Sbjct: 275 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEA 333

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 334 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQF 393

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 394 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 452

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 453 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 510

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 511 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 570

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 571 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLT 630

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   S  +  K   
Sbjct: 631 KNGVNERQGFLFAKPMPAVSFERWYKRYQ 659


>gi|330957687|gb|EGH57947.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 682

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 132/451 (29%), Positives = 237/451 (52%), Gaps = 9/451 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L    T       VM +DID +K+
Sbjct: 188 LSQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLLE-HTLGKGMLAVMFLDIDHFKR 246

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +  RI    +  D+++R  G+ F  IL+S  +  +    A  + 
Sbjct: 247 INDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CILLSIPDYEEARHLAHRVM 305

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +   I L  R + +T SIG A +    IT  E+LK+A+LA+Y +K  G N V  F   
Sbjct: 306 QKMKETIALAGRRMVMTTSIGIAVFPRDGITCDELLKHADLALYQSKGAGRNRVNFFSPD 365

Query: 699 --SFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  S  + ++E+L  A  E + L + Y PI+ L    I  LEAL++W+HP  G +   
Sbjct: 366 LKTKASMELHLEEELRSALREETGLQVYYQPIVDLRTGHIAKLEALVRWNHPHHGLLVPD 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++ ++L R   D+ + R +     + I +N ++ +L  +EL E ++
Sbjct: 426 RFIGIAEANGLIAELDNWVLRRACHDLGTLRQEGLDQ-LIIAVNCSALNLGRDELVEEVE 484

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++    +P R++L  +E+ +MGN   + L+L ++R +G+SL++DDFGT  S L+YL  
Sbjct: 485 YALADANVAPGRLELEVTENALMGNISNTILMLKQIRSLGVSLSIDDFGTGYSSLAYLKR 544

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P DT+K + S +     + + + I+++II MA  +   ++ + +     ++ L++ G D
Sbjct: 545 LPLDTLKIDRSFIIDIPNSPQDMEIVQAIIVMAHTLRLKVVTEGVETPEQLEFLSKFGSD 604

Query: 934 YIQDSHVASPLGFNSILKLLKE-RFPLVKNT 963
           Y+Q    ++P     IL L+++   P+   T
Sbjct: 605 YVQGYLFSTPQPLERILPLVRQMNLPVPTRT 635


>gi|254974376|ref|ZP_05270848.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255313500|ref|ZP_05355083.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516188|ref|ZP_05383864.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649284|ref|ZP_05396186.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260682454|ref|YP_003213739.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686053|ref|YP_003217186.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208617|emb|CBA61344.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212069|emb|CBE02656.1| putative signaling protein [Clostridium difficile R20291]
          Length = 556

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 109/552 (19%), Positives = 226/552 (40%), Gaps = 22/552 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D ++ WDI R++   +  I     L+       +  W   ++ +D   ++ 
Sbjct: 17  FELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVNCWSKIVYPDDVQIWKD 76

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +  ++G    E+R+     +  W+  R +   + +   +  +G   +I E+ K  
Sbjct: 77  DIQELLHGKKGEHNLEYRLINKYEEIVWISCRGKVYVSDDPKTIFLVGRIKNIGEKNK-- 134

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D++TG  NR+ F  R+  ++      +     + ++DID +K IN+  G +
Sbjct: 135 --------FDSITGTWNREQFEHRMNYLIKEKIYKNG---AMFIMDIDNFKNINEKYGHS 183

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL ++   + E L     L RL G+ F            I      ++        
Sbjct: 184 YGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCT-KETIEKIYEKIQMYTNTQHE 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--R 704
           +   +   T + G A +        ++ K+A++A+  AK  G N ++ F    + +    
Sbjct: 243 IESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKLKV 302

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +++ L   VEN+  +  L + P +  + +E++G E L++W    +G +S  EF+ I E
Sbjct: 303 ISMQQKLRECVENNFNDFELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPILE 362

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  ++++   +    W      P   I +N++   L ++   + +   + +  
Sbjct: 363 QSNLIIPVGKWIIKEAVKQCKEWHK--INPDFKISVNVSYIQLKEDFFRDFIVECLVEYQ 420

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +E+  + +          L+ IG+ + +DDFGT  S L+YL  +  + +K
Sbjct: 421 LRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK 480

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
              S +   T        L  II +A  I   +  + I    +   +  +G D IQ    
Sbjct: 481 IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLF 540

Query: 941 ASPLGFNSILKL 952
             P+  +   K 
Sbjct: 541 GRPVSASEFYKF 552


>gi|77166140|ref|YP_344665.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435345|ref|ZP_05048852.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76884454|gb|ABA59135.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207088456|gb|EDZ65728.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 596

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/578 (19%), Positives = 223/578 (38%), Gaps = 14/578 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +        Q ++      +  F + +R  + +   GD V   +         P    ++
Sbjct: 6   IFFQSLAYFQKMMGGRKAQEAFFLEHQRAQVTLESIGDAVITVNCRGQVDYLNPLAEELI 65

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMI 496
              +    G  +      ++     +    + +               +R   N+   + 
Sbjct: 66  DTTATQARGKSLEEVACLLNEESYSHVIGDIATWLAEDPVEGRSCTALLRDGQNRELIVQ 125

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             I P+ ++   I   + +  DI+  +     +   A  D LTG+ NR+ F  RL   LD
Sbjct: 126 TSIAPLRDTQNRIFGAVLVLRDISPLRALASQLSHQATHDALTGLINRREFEVRLRKALD 185

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
               +D     +  +D+D++K +ND  G   GD +L  L   + + ++  D LARL G+ 
Sbjct: 186 DVRQNDTCHV-LCYLDLDQFKVVNDTCGHLAGDKLLRQLATLLQDKIRESDCLARLGGDE 244

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG++L+  + +                  N       + ASIG  +         E+L  
Sbjct: 245 FGVLLLGCDLAHARKVAESLRILIRNFRFNCKGNTFPLGASIGLVAIAQGSGGLEEVLSA 304

Query: 677 AELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           A+ A Y AK +G N +  + +           +     +  A E S   L + PI  L  
Sbjct: 305 ADTACYVAKAQGRNRIHVYCLDDHSIERHYGEMQWVTRIQQAFEGSRFMLYHQPIHALNG 364

Query: 733 EE-IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           EE I   E L++        I    F+  AE   ++ A++ +++      +     +  +
Sbjct: 365 EEHIRHCELLLRMKSEDESLIPPMAFIPAAERYRLMPALDRWVISNAFLSLGECSVEQGL 424

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               I IN++ + + D      +   + +T  +P  I    +E+  + N   +   + +L
Sbjct: 425 ----IGINLSGQSISDELFLNFVIEQLHQTSVNPEVICFEITETAAIANFNGAIRFIRKL 480

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +++G    LDDFG+  S  +YL  +P D +K +GS +          A++ +I  + K +
Sbjct: 481 KEMGCRFALDDFGSGLSSFNYLKNLPVDYLKIDGSFVKEMVDDPVDHAMVEAIHKVGKVM 540

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               IA+ +  E   ++L  +G DY Q   +  P  F+
Sbjct: 541 GLKTIAEFVENEAVFEKLRLVGVDYAQGFAIGRPQPFS 578


>gi|238785908|ref|ZP_04629874.1| phosphodiesterase [Yersinia bercovieri ATCC 43970]
 gi|238713177|gb|EEQ05223.1| phosphodiesterase [Yersinia bercovieri ATCC 43970]
          Length = 864

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 213/440 (48%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++S + I   AF D+LTG+PNR  F       + ++    +    V+VI++D++K++N
Sbjct: 425 EREQSRKQIQHLAFYDSLTGLPNRSQFQVYAKQAIAMATEIGHT-LAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L  + +R+   L   DI+ RLSG+ + IIL       +       +   
Sbjct: 484 DSLGQGAGDELLALIAQRLRNDLTKSDIIGRLSGDEYIIILAPCT-MQQATLKVEKILSQ 542

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +ASIG + +  + +    ++ +A +AM+ AK+ G  +   F     
Sbjct: 543 LSQPCQIASVNIIPSASIGISLYPENGLDMDTLMNHANIAMHKAKNMGRGYFNFFSAEMN 602

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++    +++ L  A     L L Y P + L D  + G+EAL +W+HP  G+I    F+
Sbjct: 603 DLNQQRQDMEDALRHAFHIGSLELFYQPQVMLKDGHLYGVEALSRWNHPILGSIPPQRFI 662

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  + L+ +E   + +  WR +    P  + +N++  +  +  L E +  ++
Sbjct: 663 PIAEESGLINELALWAIETACQQLADWRLRGIDIP-SVSVNLSPTNFHNPGLPEMILHIL 721

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 722 QHYHLPPQDLTLEITEDILIENNPAIFATIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 781

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E    +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 782 DEIKLDKSFVHDLEYDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYQIGQ 841

Query: 937 DSHVASPLGFNSILKLLKER 956
               +  L    +   L+ R
Sbjct: 842 GFLFSEALPAIKLEHWLEHR 861



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            + +   A    +Q  +++      A+  S   + ++D+    +    +     G     
Sbjct: 1   MMAKKKAALQEATQSEYNENSALLTALDSS-LAIIEFDLSDRIIAVNQNYLDYFGYQREE 59

Query: 445 MHGPIRNWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           + G     L + H +    + ++ I    +      L+  F+    D    W+    +P+
Sbjct: 60  VIGQHH--LMFCHSDYATSEEYQKIKKCLLAGE--SLEGSFKRLHKDGSTIWLAAIYQPV 115

Query: 503 SNSNGDILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGI 541
              +G +   + IA DIT   EQ+++ +  +       LT +
Sbjct: 116 PGPDGPVTHMVKIAKDITFLIEQQEATQEWVQL-----LTQL 152



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 6/144 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW---DIVRDRVTTTPDIATILGLAS 442
           + + +       +      +  +     S   ++     D  ++ +        + G   
Sbjct: 128 IAKDITFLIEQQEATQEWVQLLTQLTDRSDSAMFITANSDHGQEAIYINQGFTKLFGYTP 187

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G   N +  +          +  +    R+  L  E      D Q HW    I  +
Sbjct: 188 EQAMGQ--NMVDLLQSEHHVQLALMDATSANARQQLLPQEL-FYGKDRQPHWCSAVINSL 244

Query: 503 SNSNGDILRYIGIANDITEQKKSL 526
            +  G     IG+  DIT  K   
Sbjct: 245 VDEQGKPSFSIGVLTDITLTKMYE 268


>gi|320642549|gb|EFX11797.1| RNase II stability modulator [Escherichia coli O157:H- str. 493-89]
 gi|320647902|gb|EFX16610.1| RNase II stability modulator [Escherichia coli O157:H- str. H 2687]
          Length = 597

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 39  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 92

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 93  FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 152

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 153 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 209

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 210 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 268

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 269 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 328

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 329 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 387

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 388 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 445

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 446 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTAYSSL 505

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 506 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 565

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 566 KNGINERQGFLFAKPMPAVAFERWYKRYL 594


>gi|163782894|ref|ZP_02177890.1| hypothetical protein HG1285_16201 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882015|gb|EDP75523.1| hypothetical protein HG1285_16201 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 846

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 212/449 (47%), Gaps = 11/449 (2%)

Query: 515 IANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           IA+D++    +  S E I      D LTG+PNR +F++RL   L  +    +    +++I
Sbjct: 396 IAHDVSFGIRKVSSEERISYLTLNDPLTGLPNRTNFINRLNEALSRAKAHGD-EVGLLLI 454

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DID +K++N+ LG  VGD+VL  + RRI E+++  D LAR+ G+ FG+I+ SE     I 
Sbjct: 455 DIDHFKELNEALGHTVGDEVLKEVARRIREVVRSSDFLARVGGDEFGVIVNSEEARNAID 514

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + K  + PI +    + +T S G + +      S  +  NA  ++  AK  GGN 
Sbjct: 515 KLIKRILKQFSKPIPVNGHSVFITLSFGGSIFPQDVDNSEILFSNAMASVEKAKELGGNR 574

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F    S    +++ ++ +L  A+E  E  L Y P + L    +VG EAL++W     
Sbjct: 575 LVMFSRGVSKATEEKIKVRTNLRYALERGEFRLFYQPKVDLKTGTVVGAEALLRWLR-TG 633

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             +   +F+ I EE  +I  +  +++E   +    W++     P  I +N++   L    
Sbjct: 634 EVVPPGKFIPILEEGELIHRVGEWVIEEALKQSERWKEAGLSVP--IAVNLSPLQLKVPS 691

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E     I         I++  +ES VM +   S  L+  L++ GI   +DDFGT  S 
Sbjct: 692 FAEQFLTTIETCDCDFCNIEIEITESAVMEDVALSVELIKALKEKGIKTYIDDFGTGHSS 751

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P   +K +   +    E +    I+++ + +A       +A+ +  E   K L
Sbjct: 752 LAYLKKLPVHGLKIDMEFIRDIPEDKEDLEIVKASVLLAHTFGMIAVAEGVEKEEQRKVL 811

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +GCD  Q      P+      + L+++
Sbjct: 812 RELGCDQAQGYLFLPPVPPEEFERYLEDK 840



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 9/188 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
                W+ +  +L  D + P  +   +L +       I   L   Y+S+ + S  ++   
Sbjct: 117 GAFAKWIELVVKLIKDKVPPEDLVPTLLALFKAVIFDITLSLDAYYYSRILKSGEKKYQT 176

Query: 410 AVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            +    D V   ++   R+      +  +LGL    + G    WL   +  + ++     
Sbjct: 177 ILDAVNDGVVIVNLESKRIVDINRKMEELLGLEEKDVVGREIFWL---YPRELEDTMRHR 233

Query: 469 DSFVGYRRGRLQYEFRVRAA-DNQFHWMIIR-IRPMSNSNGDILRYIGIANDITEQKKSL 526
                 +   +   F +      ++  + +   R   + +      + +  DI E+ K  
Sbjct: 234 CKLYIEKGEGVSGIFYIENKSSGEWIPVELSLGRYEFDESD---YAVVVFRDIRERLKHE 290

Query: 527 EGILCNAF 534
           E +   + 
Sbjct: 291 ETMRKLSR 298


>gi|329911390|ref|ZP_08275495.1| Complex sensory protein with histidine kinase domain
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545932|gb|EGF31031.1| Complex sensory protein with histidine kinase domain
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 803

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/521 (25%), Positives = 240/521 (46%), Gaps = 10/521 (1%)

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + G     + G    +L     ++RD     +     +    +  E R    +    W  
Sbjct: 1   MTGYTEADLEGRHSWFLQI---DERDQPERAVLLAAMHAARPVTVELRNYRMNGVLRWNE 57

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + I P  +  G   R++G+  DIT +K + + +   +  D LTG+ N       L   L 
Sbjct: 58  LCITPYFDDTGSACRFVGMMTDITARKLAAQLLAAQSSHDLLTGLANGIGLQQYLEAALI 117

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +    ++ I I++   ++D L     D +      R+   +   +I+AR   + 
Sbjct: 118 N-PLYRDTGMAIVTIAIEQLAVLSDTLNDEAIDTLARVAAERLQSCITTGEIVARTRSDS 176

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           + ++L +       A     +++++  PI L   E+ +T S G A +   +  S+ +LK 
Sbjct: 177 YTLVLHTGKRLDTAAR-CQGIQRALGQPIPLPAHEVYLTCSFGVAMFPEDQCDSAALLKY 235

Query: 677 AELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A +A+  A+  G N+   +   +S    DR +++  L  AV N EL ++Y P + L   +
Sbjct: 236 AGMALTQARQTGRNNQVFYSASMSQQLHDRTVMESALSNAVRNRELSVLYQPQVNLASGK 295

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EAL++W HP  G++  ++F+ +AEE  +I  I L++LER   D+ +      M  +
Sbjct: 296 VSGAEALVRWHHPDLGDVPPNQFIALAEETGLINDIGLWVLERACLDLAAC-KVTGMAKV 354

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + INI+   L D  L + + AL++ +   P+ + L  +E+ V+ + E +R  LGRL ++
Sbjct: 355 PVAINISPVQLRDPLLADQITALLAASGLEPALLTLEITEAAVLEDAELTRTTLGRLHRM 414

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           GI L LDDFGT  S LSYL   PF TV  + S +          AI+++II MA  +   
Sbjct: 415 GIGLALDDFGTGFSSLSYLRRFPFKTVNIDRSFIHDLTGNPDDAAIIKAIISMAHTLGIA 474

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++A+ +  E     L    CD IQ    +  +  +    L+
Sbjct: 475 VVAEGVETEAQCHFLRDNMCDEIQGHLFSPAVSADGFSALM 515


>gi|187732236|ref|YP_001880121.1| RNase II stability modulator [Shigella boydii CDC 3083-94]
 gi|187429228|gb|ACD08502.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Shigella boydii CDC 3083-94]
          Length = 661

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 245/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYKVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  D +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFG   S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGPGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|119472331|ref|ZP_01614470.1| sensory box protein [Alteromonadales bacterium TW-7]
 gi|119444954|gb|EAW26251.1| sensory box protein [Alteromonadales bacterium TW-7]
          Length = 670

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 224/441 (50%), Gaps = 11/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   A+QD LT +PNR+ F +++ ++++      N    ++ ID+D +K++N
Sbjct: 235 ELESANSELHRYAYQDGLTDLPNRRYFYEKIQSLINT----HNTNFALIFIDLDGFKEVN 290

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L  +  R+   +   DI+ARL G+ F +IL +  +  + A  A +++ +
Sbjct: 291 DSLGHDYGDLLLHQVANRLKACICEQDIIARLGGDEFTLILQNVTDLERAAKVANSVQHA 350

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +   I + +  + VTASIG   +     T  E++K A+ AMY +K +G N  E F  S  
Sbjct: 351 LLTSIQVKKETVYVTASIGITLYPEHGKTVEELVKRADQAMYLSKKKGRNRYEFFSYSIE 410

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +++  + E++ L ++ ++  L Y PI  +  + I   EALI+W+HP+ G I  +EF+
Sbjct: 411 EKATEKRKLIEEIKLGLKENQFELYYQPIFSVDGKSITKAEALIRWNHPQKGLIGPNEFI 470

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQAL 817
            IAE+  +I  I  ++  +  +D   +   +    I + +N +  ++    E  E     
Sbjct: 471 PIAEKNGLISDIGRWVKSQAIQDCTLFNKLSKRL-IQVSVNTSPLEIDRSGEWVEQWIQA 529

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +       + +  +E+ +MG     +  L RL +  I + +DDFG   S L+YL  + 
Sbjct: 530 SEQFNLPGHSVLIEVTENTLMGTDSEIKRQLKRLSEFQIDVAIDDFGVGYSSLAYLQRLD 589

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      +  IA++R+II MA N+   ++A+ +  +     L +M CDYI
Sbjct: 590 IDILKIDRSFIKDIEKNDNSIALVRAIITMAHNLNVEVVAEGVEKQEQYMLLKQMQCDYI 649

Query: 936 QDSHVASPLGFNSIL-KLLKE 955
           Q  + + P+     + + ++E
Sbjct: 650 QGYYFSKPVSKKVFVSEFIEE 670


>gi|333024268|ref|ZP_08452332.1| putative phosphodiesterase [Streptomyces sp. Tu6071]
 gi|332744120|gb|EGJ74561.1| putative phosphodiesterase [Streptomyces sp. Tu6071]
          Length = 726

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 220/440 (50%), Gaps = 8/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    +         +D LTG+PNRQ  L+R+ T LD +  +   R  +++ID+D+++ +
Sbjct: 268 TSLWMAHARAEEQ-LRDPLTGLPNRQWLLERIWTALDAAEREGG-RTALLLIDLDRFRSV 325

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+ +  R+   L      ARL G+ F I+L + +++      A  +  
Sbjct: 326 NDTLGHLAGDRLLLQVAERLRVSLPREAEAARLGGDEFAILLPAADSTTSAQRLARRLVG 385

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVS 698
            +  P++L    + + AS G A +    + +  +L+ A++AMY AK  R G  V   +  
Sbjct: 386 ELGSPLDLDGLTLVLEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRD 445

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   DR+ +  DL  A++  ++ L Y P +R  D E+ GLEAL++W HP+ G +   EF+
Sbjct: 446 SNTPDRLGLLGDLRRALDTGDVELHYQPKVRF-DGEVAGLEALVRWVHPERGKVPPDEFI 504

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   ++  +  ++LE     +  WR Q    P  + +N++ +D+        +   +
Sbjct: 505 AIAESSGLMPYLTEYVLETALAQVARWRAQGLYVP--VAVNVSPRDVHTPGFAGAVAGRL 562

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P  ++L  +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P 
Sbjct: 563 ARHGVPPGALQLEITEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPV 622

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q
Sbjct: 623 SELKIDRSFVARLAIDTEDAEIVRCTVDLAHSLGLVVVAEGVEDDETWERLRDLGCDAVQ 682

Query: 937 DSHVASPLGFNSILKLLKER 956
              V++ +        L+ R
Sbjct: 683 GWLVSAAMPPEETTAWLRAR 702


>gi|238924726|ref|YP_002938242.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium rectale ATCC 33656]
 gi|238876401|gb|ACR76108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium rectale ATCC 33656]
          Length = 860

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 251/575 (43%), Gaps = 34/575 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASG 443
            VIQ +L     +  +          +  SG  ++  D+   + +        +L     
Sbjct: 309 RVIQSILTKKITTNSLAGSYASLEAILENSGCGIYVADMSKSEILYMNNYCKQLL----- 363

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                       I  N  + +         +      +       ++++  +      ++
Sbjct: 364 ---------SNIIEQNKLEKY------IFSHTAESRSFTEVYVTEEDKWFDIHRTG--IA 406

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  ++ +    DIT++K+  + I   A  D LTG+ NR      L   +D S  +D 
Sbjct: 407 WVDGRKVQLV-TMYDITQKKRYQQRIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKND- 464

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  ++ ID+D +K IND LG   GD +L +++  + ++    +   R+ G+ F +I+  
Sbjct: 465 TRGAMIYIDLDDFKHINDGLGHQYGDVLLKAISHSLTQVKGIENHCYRMGGDEFIVIVTG 524

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++  ++      +++    P  L   +   T S G A + +   T  ++++ A++A+++
Sbjct: 525 -SSVDRLESIINDIQQIFVRPWFLKGEDYYCTISAGVAFFPTDARTVEDVIRRADIALFN 583

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEI-VGL 738
           AK  G N +E +   +    + R+ +++ +  A  N   E  + + PII +  E++  G 
Sbjct: 584 AKKEGKNRIEFYNEGIDGTSTKRLDLEKHMRKATMNECDEFTVYFQPIINVKGEDVCAGA 643

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+    G I+  +F+ +AE L +I  I   +L   A+    W D    P   + +
Sbjct: 644 EALVRWNSATMGFINPVDFIPLAEYLGLINPIGEHVLREAAKHCRYWNDM-GHPDYKVNV 702

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   LL N++ + ++ +I +    P  + L  +ES+ + +  R + +L  ++ +G+ +
Sbjct: 703 NLSVVQLLQNDIVKKIKGIIDEVGIEPGNLCLEVTESLAINDMVRMKRILSEIKALGVKV 762

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++  +P D +K +   +    E     A ++ +  +A  I   +  +
Sbjct: 763 ALDDFGTGYSSLNHIREMPLDIIKIDKCFIEHLGEDDFSDAFVKMVTELANTIGVHVCVE 822

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +     + +MG  YIQ      P+   S  +
Sbjct: 823 GVETDRQYAIIKKMGIYYIQGYFFDKPMCIESFEE 857


>gi|218442105|ref|YP_002380434.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218174833|gb|ACK73566.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 580

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 131/445 (29%), Positives = 237/445 (53%), Gaps = 9/445 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ E +      D+LTG+PNR  FL+ L   +D +         V+ +++D+++ I 
Sbjct: 131 EHRKTQERLKYLNSYDHLTGLPNRNFFLNSLRECIDNNQKHSGELFAVLFLNVDRFQMIK 190

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             LG A+ +  L++  +R+ E LK P +LAR+ G+ F I+L+   ++ +  D A  + ++
Sbjct: 191 YSLGQALSEQFLIATAQRLQEWLKSPHLLARMRGDEFIILLLDIKDARQALDLADEIHQA 250

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVS 698
            + P NL  R +  T+SIG            + L+ A++A +HA  K    + +    + 
Sbjct: 251 FSKPFNLDGRVVYSTSSIGIVLGNIDYQNPEDFLRAADIAKHHAQKKTTSRSVLYDASMQ 310

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S+R+ ++ DL  A++N ELYL Y PI+ L   EI   EAL++W HP  G IS +EF+
Sbjct: 311 RRVSERLQLETDLQQAIQNQELYLHYQPIVSLETGEITAFEALLRWHHPTRGLISPAEFI 370

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817
            +AEE  +I  +  + L +  + +  W+++      + + +N++   L + +L + +  L
Sbjct: 371 PLAEETGLIIPLGQWALSQACQRLRLWQEEFPHLSALSMSVNLSGVQLSNPDLIKQIDEL 430

Query: 818 ISKTLYSPSRIKLSFSESVVM----GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +         +KL  +ES +M     NP  +  +L +L++  I L +DDFGT  S LSYL
Sbjct: 431 LESVGLCGDSLKLEITESFLMENMIENPLAANQILKQLKERQIKLCIDDFGTGYSSLSYL 490

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            ++P D +K + S +   TE  K   I++SI+ +AK++   ++A+ I  E  +  L ++ 
Sbjct: 491 HHLPIDILKIDRSFLNSKTEKGKNSEIVKSIVNLAKDLGLALVAEGIETEKQLTMLKQLQ 550

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CDY Q    A PL  +++ +L  ++
Sbjct: 551 CDYGQGYLFAKPLDVHTLYQLFDQQ 575


>gi|241205730|ref|YP_002976826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859620|gb|ACS57287.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 783

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 139/683 (20%), Positives = 266/683 (38%), Gaps = 40/683 (5%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
                L   S         I+    A + ++ T  I            L           
Sbjct: 130 VYYPALGLFSGLKQEEVVFISIFIFAVLTVFGTALIGNRFFVIQPLMRL----------- 178

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                +  T++L +           +   +   F  +Q  L +      +     R +  
Sbjct: 179 --TAAIEATRQLGSRHHVDWQSNDEMGR-LAHSFNEMQTKLESEEKELKLAHR--RATDI 233

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +  +++  D        +       G    ++ G  RN+   +    RD F      
Sbjct: 234 YNLTPAMLFSLDEEDRITAVSDYWLLATGYNRAAIIG--RNFADLVTPPTRDKFVK---- 287

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                   +    +    D +   ++ +     + +   +   + +  D+TE K S +  
Sbjct: 288 -RRQGESGMTVTVKFICLDGRTMDVLIMESEAGAGAQDRLS--LSVMADVTELKASEDRN 344

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LTG+ NRQ F   L   +  +    +     + +D+D++K IND +G A GD
Sbjct: 345 HRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGH-ELACLFVDLDRFKWINDNMGHAAGD 403

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             L+ L  R+   L   D  ARL G+ F I+L +++   +       +      P     
Sbjct: 404 MALIELVERLKTHLAPSDEAARLGGDEFAILLPAKDAEKRAKVMCEQIASIFETPFAPD- 462

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
             + ++AS+G A +     T++E+L+ +++AMY  K  G N  + F  +       R  I
Sbjct: 463 --MHLSASVGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDNAMLDRARSRAEI 520

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + ++   + ++       PI+ L    I G EAL++ +HP+ G +  +E + +AEE   I
Sbjct: 521 EANIEAGLVDNWFEAFLQPIVTLNGRGIAGFEALMRLNHPQKGLMPPAEIISVAEETAKI 580

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   ++E+   ++      + M   ++ IN +        L   + A++ +    P R
Sbjct: 581 VRVGNVIMEKAIANLAEISRISGMQDTYLAINFSPLQFE-PALPARLAAIVGRHGIRPER 639

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +E+V+M +  + R+++  LR+ G  + LDDFGT  S LSYL   P D +K + S 
Sbjct: 640 IVVEITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSF 699

Query: 888 MTGST-------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
                       +K   ++  I  ++  +  T+IA+ I  E + + L +MG DY Q    
Sbjct: 700 TRAINDGDDDVRQKSRMLIEGITTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLF 759

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
             P    ++++ L      V   
Sbjct: 760 HRPQHAATLIEQLMALQSAVARA 782


>gi|324113159|gb|EGC07134.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 663

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 241/565 (42%), Gaps = 13/565 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +          V  +   +   D   +            GL    + G    +  ++
Sbjct: 103 ARDLMHGLSFAEQVVSEANSAILILDSRGNIQRFNRLCEEYTGLKEHEVIGQ-SVFKLFM 161

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R  +D F        + E  ++    Q  ++       S S  + +  I   
Sbjct: 162 SRREAAASRRNIDVFFRSGNA-WEVERWIKTRKGQRLFLFRNKFIHSGSGKNEIYLICSG 220

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE++ + E +   A  D +TG+PNR +  + +   +       N +  ++ +D+D +
Sbjct: 221 TDITEERVAQERLRVLANTDTITGLPNRNAIHELIDNAI---VQTTNAQVGIVYLDLDNF 277

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           KK+ND  G   GD +L ++   I   L     LAR  G+ F ++     +   +   A  
Sbjct: 278 KKVNDAYGHMFGDQLLQAVALAILSCLDNDQTLARHGGDEFIVLAPD-TSQGALEAMASR 336

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +   + +P  +   E+    S+G A        S  ++++A+ AMY AK  G      F 
Sbjct: 337 ILTRLRLPFRIGLIEVQTGCSVGIALSPLHGHDSDCLIRSADTAMYTAKEGGRGQFCVFS 396

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    + + +  +L  A+EN +L + Y P +     E+  LEAL++W  P+ G I  
Sbjct: 397 PEMNQRVFEYLWLDTNLRKALENDQLLIHYQPKVTWR-GEVRSLEALVRWQSPERGLIPP 455

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+  AEE  +I  +  +++  + R +  WR +     + + +NI+++ L D  +   +
Sbjct: 456 GEFISYAEESGLIVPLGRWVILDVVRQVAKWRSKGIN--LRVAVNISARQLADQTIFTYL 513

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ +  +    I +  +E  ++ N   +  ++ +  ++G  + LDDFGT  S LS L 
Sbjct: 514 KQVLHELDFEYCPIDVELTERCLLENEALALSVIQQFSRLGAQVHLDDFGTGYSSLSQLA 573

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G 
Sbjct: 574 RFPIDAIKLDQAFVRNIHKQSVSQSLVRAIVAVAQALNLQVIAEGVESVKEDAFLTKNGV 633

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
           +  Q    A P+   +  +  K   
Sbjct: 634 NERQGFLFAKPMPAVAFERWYKRYL 658


>gi|320334720|ref|YP_004171431.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319756009|gb|ADV67766.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 635

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 210/437 (48%), Gaps = 11/437 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A+ D LT +PNR   +  L   LD +     L  +++ IDID +K  ND LG  
Sbjct: 196 ETLQRLAYTDLLTSLPNRLQLMQELHRTLDHAQLS-GLPVSLLYIDIDGFKSANDTLGHE 254

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +  R+  L +  D++ARL+G+ F + L +  +       A  + + +  PI 
Sbjct: 255 AGDVVLREIAERLRALSRPSDVVARLTGDEFVVALWN-TDVHDAERLAARVLQDLTRPIP 313

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--R 704
              + + +T+SIG ++       +  +L+ A+ AMY  KH G N V  +      +   R
Sbjct: 314 YAGQTLLITSSIGISNAPLHSTDAGTLLRQADSAMYQVKHSGKNAVRLYAPELDAAIEGR 373

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++  L  A+   EL+L Y P+  L     + +EAL++W HP+ G +S +EF+ +AE  
Sbjct: 374 ARLERALQGALTRGELHLHYQPLYALDSARPMKVEALMRWTHPELGVVSPAEFIPVAETS 433

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  + L      +  WR Q   P + + +N+A   L        ++A +  +   
Sbjct: 434 GLIVPLGAWALNEACAQLARWRAQGL-PDVRMCVNVAPLQLAHPNFTRTVEAALHASGLD 492

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              ++L  +ES VM + E +  +L  LR +G++L +DDFGT  S LSYL  +P  TVK +
Sbjct: 493 GHLLELEVTESSVMRSAEATSDVLRELRALGVTLAIDDFGTGYSSLSYLRDLPIQTVKVD 552

Query: 885 GSLMTGSTEKR------IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            S +      R      +A++ +I+ +A  ++  + A+ I     +  L  +GC + Q  
Sbjct: 553 RSFVRDLGSPRVAPQYALALIEAIVSIAGTLDLDVTAEGIETPEQLALLRDLGCAHGQGY 612

Query: 939 HVASPLGFNSILKLLKE 955
            +A P        +L+ 
Sbjct: 613 FLARPGPPEQAEAVLRR 629


>gi|167622255|ref|YP_001672549.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352277|gb|ABZ74890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 715

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/604 (19%), Positives = 248/604 (41%), Gaps = 13/604 (2%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD--GERQSLAVLG 413
           M+   +    ++           VIL+ F  I     +       F     E  S+ +  
Sbjct: 105 MSQQGKELPTVVTLHPAQLDDSRVILVSFRPIDRRKRSRMSISNGFEKLPKELMSITLED 164

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S + V+  +     +     +  I G ++  + G     L      +        D+ + 
Sbjct: 165 SAEAVYITNEDNLILAVNKAMCRICGYSAEHLLGKTPQNLKL----ELQLEDQAHDTPLK 220

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R G  Q E     +D          R +   N   + ++ + +DI+E+K     +   A
Sbjct: 221 GR-GSWQGEVWKCRSDGSTFPAWQSCRRIYADN--TVFFVNLFSDISEKKTLEAKLTQQA 277

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR   +  L+  ++       +   +M +D++ +K +ND  G + GD VL 
Sbjct: 278 MYDKLTGLPNRFHLIQILSKAINNIKRSPEMIGALMFLDLNGFKNVNDSFGHSTGDKVLQ 337

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+         +ARL G+ F ++L   +N  +I  F+  +      P  +  ++  
Sbjct: 338 LVAARLEACCIENAEIARLGGDEFTLVLPECHNRQEIETFSELILSLFEAPFEINGQKFY 397

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLC 712
           +  SIG + +       +++L  A+ AMY AK         +  +      ++    DL 
Sbjct: 398 LGTSIGISLFPQQSDDPNQLLSMADTAMYSAKRSPNHVRFYNATIREAAEKKLHTLNDLR 457

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A    +  L Y  I+ L   +IV +EAL++W       I + +F+ + EE  ++  +  
Sbjct: 458 HAQGLGQFSLAYQSIVDLESNDIVAVEALLRWTQSHGEIIEAQDFIPLLEEAGLMVNVGQ 517

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE+    ++ W  +     + I +NI+   L   +    ++ L+++T    + + +  
Sbjct: 518 WALEQACTQMLKWHQEF-DSSLKISVNISRSQLEHPDFIPMLKGLLTRTQLPANALIIEI 576

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E   +  P+    +L +L+++ +++ +DDFG + S L+ L  +P D++K +        
Sbjct: 577 TERTFIRRPKLMTKVLVQLKEMNVAIAIDDFGAELSSLARLSSLPIDSLKIDAGFAQRVD 636

Query: 893 EKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-L 950
            K+   + ++I+ +A+ +E   + + +  +     L  +G    Q      P+   S  L
Sbjct: 637 NKQGQKLCKAIMQLAQTLEIDFVVEGVETQAQRDLLLSLGKGMGQGYFFDRPVIAESFTL 696

Query: 951 KLLK 954
           +LL 
Sbjct: 697 ELLS 700


>gi|326402713|ref|YP_004282794.1| hypothetical protein ACMV_05650 [Acidiphilium multivorum AIU301]
 gi|325049574|dbj|BAJ79912.1| hypothetical protein ACMV_05650 [Acidiphilium multivorum AIU301]
          Length = 661

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 117/453 (25%), Positives = 208/453 (45%), Gaps = 15/453 (3%)

Query: 509 ILRYIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  ++ +    + + ++ E  I   AF D LTG+PNR  F +   +     A        
Sbjct: 202 VAGFLAVVRSRSLRLQASEVRIHHLAFHDPLTGLPNRTFFNE---SADAALAALSGTSIA 258

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D++K++ND LG   GD ++     R+  L++  D++AR+ G+ F ++L      
Sbjct: 259 LLFLDLDRFKQVNDTLGHPAGDTLIREFGARLRALVREEDMVARVGGDEFTVMLAGVAGR 318

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      + +S+ +P +L    + V  SIG A          ++L+ A++A+Y AK  
Sbjct: 319 EDVEKLCARIVESVRVPFDLDGNRVFVGLSIGVALAPDHGTDRIDLLRKADIALYSAKST 378

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G      F   +      R  I+ DL  A  E+ E+   Y PI       I G EAL++W
Sbjct: 379 GRGRFAFFDPVMDDALRLRREIEADLRAALQESGEIVPYYQPIHAAAGHTITGFEALLRW 438

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G IS   F+ IAEE  +I+ +   +L       ++W      P   I +N +  +
Sbjct: 439 RHPALGWISPDLFIPIAEEAGLIEMMGERVLREACTAAVNW------PNRTIAVNASGPE 492

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +    E + A++  T   P R+++  +E+   G    +   L  LR +G+ + +DDFG
Sbjct: 493 LANPGYAERVAAILRVTGLPPQRLEIEITETAANGQIGTAAENLASLRAMGVRIAIDDFG 552

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+ L  +  D VK + S +   G  +    I+R+II +A      + A+ +    
Sbjct: 553 TGFSSLARLQQLRVDRVKIDRSFIHGFGDQDSDEVIVRAIIELAHARGLRVTAEGVETLE 612

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L R+GCD +Q    +       I +L++ 
Sbjct: 613 QREGLARIGCDDLQGFIFSKARPAPEIDRLVEA 645


>gi|291527143|emb|CBK92729.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 860

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 252/575 (43%), Gaps = 34/575 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASG 443
            VIQ +L     +  +          +  SG  ++  D+   + +        +L     
Sbjct: 309 RVIQSILTKKITTNSLAGSYASLEAILENSGCGIYVADMSKSEILYMNNYCKQLL----- 363

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                       I  N  + +         +      +       ++++  +      ++
Sbjct: 364 ---------SNIIEQNKLEKY------IFSHTAESRSFTEVYVTEEDKWFDIHRTG--IA 406

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  ++ +    DIT++K+  + I   A  D LTG+ NR      L   +D S  +D 
Sbjct: 407 WVDGRKVQLV-TLYDITQKKRYQQRIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKND- 464

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  ++ ID+D +K IND LG   GD +L +++  + ++ +  +   R+ G+ F +I+  
Sbjct: 465 TRGAMIYIDLDDFKHINDGLGHQYGDVLLKAISHSLTQVKEIENHCYRMGGDEFIVIVTG 524

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++  ++      +++    P  L   +   T S G A + +   T  ++++ A++A+++
Sbjct: 525 -SSVDRLESIINDIQQIFVRPWFLKGEDYYCTISAGVAFFPTDASTVEDVIRRADIALFN 583

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEI-VGL 738
           AK  G N +E +   +    + R+ +++ +  A  N   E  + + PII +  E++  G 
Sbjct: 584 AKKEGKNRIEFYNEGIDGTSTKRLDLEKHMRKATMNECDEFTVYFQPIINVKGEDVCAGA 643

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+    G I+  +F+ +AE L +I  I   +L   A+    W D    P   + +
Sbjct: 644 EALVRWNSATMGFINPVDFIPLAEYLGLINPIGEHVLREAAKHCRYWNDM-GHPDYKVNV 702

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   LL N++ + ++ +I +    P  + L  +ES+ + +  R + +L  ++ +G+ +
Sbjct: 703 NLSVVQLLQNDIVKKIKGIIDEVGIEPGNLCLEVTESLAINDMVRMKRILSEIKALGVKV 762

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++  +P D +K +   +    E     A ++ +  +A  I   +  +
Sbjct: 763 ALDDFGTGYSSLNHIREMPLDIIKIDKCFIEHLGEDDFSDAFVKMVTELANTIGVHVCVE 822

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +     + +MG  YIQ      P+   S  +
Sbjct: 823 GVETDRQYAIIKKMGIYYIQGYFFDKPMCIESFEE 857


>gi|254447712|ref|ZP_05061178.1| diguanylate cyclase/phosphodiesterase [gamma proteobacterium
            HTCC5015]
 gi|198263055|gb|EDY87334.1| diguanylate cyclase/phosphodiesterase [gamma proteobacterium
            HTCC5015]
          Length = 1250

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 130/436 (29%), Positives = 233/436 (53%), Gaps = 6/436 (1%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +S      +AF D LTG+PNR+ F   L+  L+ S  +      V+++D+D++K IND L
Sbjct: 808  ESEAEQHSDAFHDFLTGLPNREFFKKLLSHSLEQSQRNTQYEFAVLMLDLDRFKVINDSL 867

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G   GD VL  +  R+ E ++  D +ARL G+ F I+L    + +  +D A  +++ +  
Sbjct: 868  GHEEGDRVLQEVATRLVEAVRAGDYVARLGGDEFAILLDGIGDDMDASDIASDIQRELQK 927

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
             ++L E E   +ASIG A  +       +++++A+ AMYHAK+ G      F     +  
Sbjct: 928  TLHLGEHEAVSSASIGIALSSRGYQHVEDLIRDADSAMYHAKNHGKAQHSVFSQEMHQRA 987

Query: 703  -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             DR+ ++ DL  +VE ++L + Y PII L  +++ G EAL++W HP  G +   +F+ +A
Sbjct: 988  LDRLQLEADLRRSVEANQLRVHYQPIIDLAQDKVAGFEALVRWHHPSRGLLFPDDFVPMA 1047

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISK 820
            EE   I+ I+ ++L+     +  WR   +    +F+ +N++     +  +   +  L+S 
Sbjct: 1048 EETGYIRNIDRWVLDNATNTLTQWRQMESQANDLFLSLNLSGLHFDNMAILSHIGNLLSS 1107

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               S  R+KL  +ES++M N  R+  +   L   G+ +++DDFG   S LS +  +P +T
Sbjct: 1108 KDLS-GRLKLELTESILMQNSSRALEMFNILAARGLHISIDDFGVGYSSLSRIRRLPLNT 1166

Query: 881  VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S +      + A  I+R+II +A N++  ++A+ I        L R+GC Y Q  
Sbjct: 1167 LKIDKSFVQDMQRDQGALDIIRAIIDLAYNLKMEVVAEGIETAHQYTLLKRLGCHYGQGY 1226

Query: 939  HVASPLGFNSILKLLK 954
            +++ PL  +  L+ L+
Sbjct: 1227 YMSRPLPEDRALEFLQ 1242



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 63/200 (31%), Gaps = 20/200 (10%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS----GDIVW-----DWDI 423
           G L  I + +                G  +  ERQ+  V+G+    GD+ +     + D 
Sbjct: 107 GALDAIPLSVVSGEALAYYLNVALRLGALARQERQAGQVMGAIGSFGDVFFFRARLEQDR 166

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                  +     + G  +             +   DR   +  +++  G RR     EF
Sbjct: 167 PPILDWISSSFVDVSGYPTRDFLEREDGVWSLVEEEDRSLVQDWIEALSGNRRA--ACEF 224

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           R+     +  W+  +  P+ +     +   +G  + I  ++           +       
Sbjct: 225 RLIDHLGRALWVEAKGHPIWSHERQCVTGILGRVSQIGARRHLEARAEHAEAR------- 277

Query: 543 NRQSFLDRLTTILDLSATDD 562
            R    D + + L+ +++  
Sbjct: 278 -RGLLHDFIQSALNATSSSS 296


>gi|170745081|ref|YP_001766538.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658682|gb|ACB27736.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 466

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/447 (26%), Positives = 214/447 (47%), Gaps = 11/447 (2%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +I    DITE+++S   +   A  D LT +PNR  F + +   L     D      ++ 
Sbjct: 18  GWISTHEDITERRRSEARLRFLARHDVLTQLPNRLHFEEVVERELA-VRADRAEAVALLC 76

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K++ND+ G   GD +L+ +  R+  L+     +ARL G+ F ++          
Sbjct: 77  LDLDGFKQVNDLFGHPAGDRLLIEVAARLKALIGARGAVARLGGDEFAVLATDLAAGQAA 136

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A        +I+ P    E   +++ S+G A +     T   +L  +++A+  AK  G  
Sbjct: 137 ARAQAI-IDAISAPYADGELRYSISCSVGIALFPHDGDTYDAVLSASDMALVRAKKEGKG 195

Query: 691 HVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F   +     +R  +  DL  A+   +  L Y P  R+  +   G EAL++W HP 
Sbjct: 196 TYRFFEADMDKAAFERQRLALDLRAAIGTGQFALHYQPQFRIAADRACGFEALLRWTHPT 255

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS ++F+ +AEE   I  +  ++L    R+  SW       P+ I +N++   L   
Sbjct: 256 RGPISPAQFIPLAEETGAILPLGEWVLREACREAASW-----TLPLGIAVNLSIAQLQQA 310

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            LC+ + A++ +T     R++L  +ES+ +    R++ +L  L+ +G+ +++DDFGT  S
Sbjct: 311 GLCDVVGAVLEETGLKADRLELEVTESLFLKGSARAQEMLRDLKALGVRISMDDFGTGYS 370

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L   PFD +K + S +     T K  AI+R+I+ + ++++  +IA+ +  E  +  
Sbjct: 371 SLATLEAFPFDKIKIDRSFVWQIGVTSKGGAIVRAILSLGESLDIPVIAEGVETEGQLAF 430

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L + GC  IQ      P    S   L+
Sbjct: 431 LRQHGCAEIQGYLRGKPQPIASYRALV 457


>gi|331015730|gb|EGH95786.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 763

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/696 (21%), Positives = 292/696 (41%), Gaps = 33/696 (4%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +  +     A  F        V    A  +           +       +  ++L   A
Sbjct: 28  LVALAYGVACAACFATLDIADRVIHVDATTSRRVWKALGALCLAGGVWAMHFISMLAFQA 87

Query: 344 -------WILIFIWFIGLWMAITKRLDNDIIQPALVG--GLVLIVILIGFTVIQHVLATG 394
                    +  +  + + +     +    I    +    +  +++ IG + + ++  + 
Sbjct: 88  PLKISYDLTITLVSLLIVLITALGAMKALTIPELTLKRCLISSVIMGIGISTMHYLGMSA 147

Query: 395 YFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
             S        R  +L  V+     +    + R     +     +       + G     
Sbjct: 148 MRSAATQYYEPRMFALSIVVAVLSSIALLTLSRHLRQYSGMFHQMFRYGVSLLLG---AG 204

Query: 453 LPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------MSN 504
           L  +H+      R ++  ++ +         +  +  A      +   I        +  
Sbjct: 205 LLTMHLMGMRALRLVIPENAELHIPGTENSQQLGLTIAAITLLIIAGSISAAMADKKLQG 264

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              D+ R   +   + + + SL+ +   A  D LT + NR+ F       L    T    
Sbjct: 265 KENDLQRVNALLTQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLLE-HTHSKG 320

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S 
Sbjct: 321 MLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CILLSI 379

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  +    A  +   +  PI L  R + +T SIG A +     T  E+LK+A+LA+Y +
Sbjct: 380 PDYEEARHLAHRVMYKMKEPIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQS 439

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEAL 741
           K  G N V  F  +      + +  +  L     E   L + Y PI+ +    +  LEAL
Sbjct: 440 KGNGRNRVNFFSPALKTKASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKLEAL 499

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G ++   F+ IAE   +I  ++ ++L R  RD+ + R++     + I +N +
Sbjct: 500 VRWHHPQHGLLAPVRFIGIAEANGLIAELDNWVLRRACRDLATLRNEGLEQ-LIITVNCS 558

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL++D
Sbjct: 559 ALTLGRDELVEEVEQALADANAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSID 618

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P DT+K + S +     + + + I+++II MA  +   ++ + + 
Sbjct: 619 DFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPDSPQDMEIVQAIIVMAHTLHLKVVTEGVE 678

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L + G DY+Q    + P     IL L K+
Sbjct: 679 TPAQLEFLNQFGSDYVQGYLFSRPQPLERILPLAKQ 714


>gi|222149526|ref|YP_002550483.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736508|gb|ACM37471.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 909

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 135/642 (21%), Positives = 269/642 (41%), Gaps = 44/642 (6%)

Query: 350 WFIGLWMAITKRLDND-IIQPALVGGLVLIVILIGFTVIQHVLATGYFS--------QGI 400
           W +        +   + I    LV  ++ + I+  F  + H+L     +        + +
Sbjct: 266 WILAAAPKGGWQQPANEIWFRQLVMFILALAIITPFLWVAHLLMERQANIAELNEQEREL 325

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +  +R  +A+  S   VW+ DI    +T    +  +             +W   +H  D
Sbjct: 326 RTLSQRLQIALDASQIGVWEMDIGSLALTWDNRMRQLYDCDPSRPIEIREDWSNCLHPED 385

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R++    L + +         EFR+     Q   +        +++    + +G+  +IT
Sbjct: 386 RESATHALATAIRT-GSNYSTEFRILDRSGQIRHIRSFGSIYRDADFR-KKIVGVNWNIT 443

Query: 521 ---------------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                                E + + + +   +  D LTG+ NR+     L  I DL  
Sbjct: 444 ADVKLHEALHDAKTALEAQNQELENARQIMEHTSLHDPLTGLANRRFLDRHLAEIEDL-- 501

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             +     ++ ID+D++K+IND LG A GD +L     +I   +   D  AR+ G+ F +
Sbjct: 502 RGNGKSVALLHIDLDRFKEINDTLGHAAGDAMLRHAASQINAHMSPGDFAARIGGDEFVV 561

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +   E++          +  +I  PI+   +E  V+ASIG A   ++     + L NA++
Sbjct: 562 VKHDESSQAAARILGETLIDAINQPIHWEGQECRVSASIGIAQSCNNHPHLEQALINADI 621

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+Y AK RG N +E F               + +  ++ + +    + P       +I G
Sbjct: 622 ALYEAKRRGKNRLEFFSDTLKEATLSTKRTADAILRSLADHDFIPYFQPQFDAHTMQITG 681

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL +W HP+ G +    F+ +AE L ++ AI+  +LE+       W++     P  + 
Sbjct: 682 VEALARWQHPQLGLLPPIAFLSVAESLNVVAAIDNSILEQSLAQARRWQEHGLDTP-HVS 740

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGI 856
           +NI+++ L D+ L   ++     T      +     ES+   +   +  + + +++ +GI
Sbjct: 741 VNISAQRLFDDGLFAHLRD----TPLPAGGLAFELLESISFDDKAEAAAIAISQIKILGI 796

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S +  L  +    +K +  L      ++++  ++ SI+ + +++   II
Sbjct: 797 DIEIDDFGTGYSSILSLLKLSPRRLKIDRQLTLPIIESKQQRRLIGSIVEIGRSLGIEII 856

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L  +GC  +Q   +A P+  + +  LLK R
Sbjct: 857 AEGVETMQHADILRDLGCHTLQGFGLARPMNGDDLFALLKRR 898


>gi|15801891|ref|NP_287911.1| RNase II stability modulator [Escherichia coli O157:H7 EDL933]
 gi|15831112|ref|NP_309885.1| RNase II stability modulator [Escherichia coli O157:H7 str. Sakai]
 gi|168762710|ref|ZP_02787717.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC4501]
 gi|168799587|ref|ZP_02824594.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC508]
 gi|217329471|ref|ZP_03445551.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str.
           TW14588]
 gi|291282375|ref|YP_003499193.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O55:H7 str. CB9615]
 gi|12515503|gb|AAG56527.1|AE005378_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361323|dbj|BAB35281.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|189367010|gb|EDU85426.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC4501]
 gi|189377978|gb|EDU96394.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC508]
 gi|217317910|gb|EEC26338.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str.
           TW14588]
 gi|290762248|gb|ADD56209.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O55:H7 str. CB9615]
 gi|320189960|gb|EFW64612.1| hypothetical protein ECoD_03443 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637183|gb|EFX07009.1| RNase II stability modulator [Escherichia coli O157:H7 str. G5101]
 gi|320653504|gb|EFX21609.1| RNase II stability modulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320659204|gb|EFX26793.1| RNase II stability modulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320663997|gb|EFX31184.1| RNase II stability modulator [Escherichia coli O157:H7 str. LSU-61]
 gi|326341051|gb|EGD64844.1| hypothetical protein ECF_03601 [Escherichia coli O157:H7 str. 1125]
          Length = 661

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTAYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|190891977|ref|YP_001978519.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697256|gb|ACE91341.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 764

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/590 (24%), Positives = 257/590 (43%), Gaps = 34/590 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + +     R  LA+  S   V++ DI  D V     +  I GL   S       
Sbjct: 156 ARKEAEETLSRLSRRLDLALEISHIGVFEADIENDTVEWDDRLIAIYGLQGASHQIAGDA 215

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H +DR+    +    V       Q E+R+   D     +  R     + NG   +
Sbjct: 216 WAKSLHPDDRERVLGLAGRSVESGSD-FQQEYRIIRGDGVERIIRARSAFFVDGNGH-RK 273

Query: 512 YIGIANDITE---------------------QKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            IG   D+TE                      + + E I   A  D LT +PNR+     
Sbjct: 274 LIGANWDVTEDVALRNELQRAKDLAEARNRELEAAKESIERLALHDYLTDLPNRRYLDKM 333

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L            L   ++ +D+D++K+IND LG   GD +L      +   ++  D +A
Sbjct: 334 LEERSAEC-RAKGLALAILHVDLDRFKQINDTLGHRAGDAMLQHAANVLRNSVRAADFVA 392

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I+   +  S KI   A  +   +  P+     +    ASIG A  +S K+ +
Sbjct: 393 RIGGDEFVILCTMDAASKKIGGLAQRIIHKLRKPVRYEGHDCRFGASIGIAIDSSPKLDA 452

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPII 728
            + L +A++A+Y AK  G N  E F  S+ R   +   + +++ + +E +E    Y    
Sbjct: 453 KQTLLDADIALYRAKGLGRNRFEFFSASARRDIVLAKHLADEILIGLERNEFVPFYQLQF 512

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++ G+E L +W HP+ G ++   F+ IAE+L ++  I+  +LER   D  +W  +
Sbjct: 513 DARTLDVTGVETLARWQHPRHGLLAPDRFLDIAEDLDVVSTIDALILERALADRRAWIKE 572

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLL 847
               P  + +N++++ L D +L + ++AL       P  I     ES+ +    E     
Sbjct: 573 GLSIP-KVSVNVSARRLADPDLGKKLRAL----KIEPGAIAFELLESISLDECDEVVTAN 627

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +LRK+GI + +DDFGT  + +  L  +   T+K +  L+     + ++  ++ SII +
Sbjct: 628 LKKLRKLGIDVQIDDFGTGHASIVSLLRLSPKTLKIDRELIRLLPQSAEQRKLVGSIIDI 687

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++   +IA+ +     I+ L  + CD +Q   +A P+    I   ++ 
Sbjct: 688 GRSLNIRVIAEGVETADHIRILEDLDCDTLQGYALARPMPAMQIPSFIRA 737



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 136/420 (32%), Gaps = 61/420 (14%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH-GPIRNWLPYIH 457
            +     R + A++GSG  VWD +   DR   +P   TI G+A   +  G    WL  +H
Sbjct: 32  ELAERESRWNHALVGSGLGVWDHNYRLDRKYYSPTWKTIRGMAPDEVVAGDYDAWLQLVH 91

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIA 516
            +DRD     ++           +++R R  D  + W+  R   +  + NG   R +G  
Sbjct: 92  PDDRDFVAHAIERQNAGDPNYQIFQYRERHRDGHWVWIDCRGACVEWDENGVPSRIVGTD 151

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT +K++ E +   +                RL   L++S         V   DI+  
Sbjct: 152 IDITARKEAEETLSRLS---------------RRLDLALEIS------HIGVFEADIE-- 188

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
              ND +     D ++      +            ++G+ +   L  + +  ++   A  
Sbjct: 189 ---NDTV--EWDDRLIAIYG--LQGASHQ------IAGDAWAKSLHPD-DRERVLGLA-- 232

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
                        R +   +                +++    A       G  H +   
Sbjct: 233 ------------GRSVESGSDFQQEYRIIRGDGVERIIR----ARSAFFVDGNGHRKLIG 276

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +   ++ V ++ +L  A + +E         +   E +   + L     P    +    
Sbjct: 277 ANWDVTEDVALRNELQRAKDLAEARNRELEAAKESIERLALHDYLTDL--PNRRYLDKML 334

Query: 757 FMLIAE--ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
               AE     +  AI    L+R  +   +   +A    +    N+    +   +    +
Sbjct: 335 EERSAECRAKGLALAILHVDLDRFKQINDTLGHRAGDAMLQHAANVLRNSVRAADFVARI 394


>gi|209549519|ref|YP_002281436.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535275|gb|ACI55210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 761

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 147/590 (24%), Positives = 257/590 (43%), Gaps = 34/590 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A       +     R  LA+  S   V++ DI  D V     +  I GL   S       
Sbjct: 153 ARKEAEDTLSRLSRRLDLALEISRIGVFEADIENDTVEWDERLIAIYGLKGASRPIASDV 212

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H +DR+    + D  V       Q E+R+   D     +  R     + NG   +
Sbjct: 213 WAKSLHPDDRERVLGLSDRSVESGSD-FQQEYRIIRGDGAERVIRARSAFFVDGNGH-RK 270

Query: 512 YIGIANDITEQKK---------------------SLEGILCNAFQDNLTGIPNRQSFLDR 550
            IG   D+TE+                       + E I   A  D LT +PNR+     
Sbjct: 271 LIGANWDVTEEVALRNELQRAKDLAEAHNRELEAAKESIERLALHDYLTSLPNRRYLDKM 330

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L            L   ++ ID+D++K+IND LG   GD +L      +   ++  D +A
Sbjct: 331 LDERSAEC-RAKGLGLAILHIDLDRFKQINDTLGHRAGDAMLQHAASVLRNSVRAADFVA 389

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I+   +  S KIA  A  + + +  P+     +    ASIG A  +   + +
Sbjct: 390 RIGGDEFVILCTVDPASKKIASLAERIIRELRKPVRYEGHDCRFGASIGIAVDSGPTLDA 449

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPII 728
            +ML +A++A+Y AK  G N +E F  S  R       + +++ + +E +E    Y    
Sbjct: 450 KQMLLDADIALYRAKGLGRNRLEFFSASDRRDVISAKHLADEILIGLERNEFVPFYQLQF 509

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++VG+E L +W HP  G ++   F+ IAE+L ++  I+  +LER   D  +W   
Sbjct: 510 DARTLDVVGVETLARWQHPVHGLLAPDRFLDIAEDLDVVSTIDALILERAIADRRAWIKD 569

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLL 847
               P  I +N++++ L D +L + ++AL      +P        ES+ + +  E     
Sbjct: 570 GLTVP-KISVNVSARRLADPDLGKKLRAL----KIAPGTFAFELLESISLDDCDEAVAAN 624

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +LRK+GI + +DDFGT  + +  L  +   T+K +  L+     + ++  ++ SII +
Sbjct: 625 LKKLRKLGIDIQIDDFGTGHASIVSLLRLSPKTLKIDRELIRLLPQSAEQRKLVGSIIDI 684

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++   +IA+ +     I+ L  + CD +Q   +A P+    I   ++ 
Sbjct: 685 GRSLNILVIAEGVETSDHIRILEELDCDTLQGYALARPMPAMQIPSFIRA 734



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 2/138 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHI 458
           +     R + A++GSG  VWD +   DR   +    T+ G+A      G    WL  +H 
Sbjct: 30  LAERESRWNHALVGSGLGVWDHNYRLDRKYYSQTWKTMRGMAPDEEAAGDYDAWLALVHP 89

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
           +DRD     +D           +E+R R  D  + W+  R   +  + +G   R +G   
Sbjct: 90  DDRDFVVHAIDRQNAGDPDFQIFEYRERHRDGHWMWIDCRGACVEWDESGVPTRIVGTDT 149

Query: 518 DITEQKKSLEGILCNAFQ 535
           DIT +K++ + +   + +
Sbjct: 150 DITARKEAEDTLSRLSRR 167


>gi|83593936|ref|YP_427688.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83576850|gb|ABC23401.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 678

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/431 (28%), Positives = 199/431 (46%), Gaps = 7/431 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A +D LT +PNR   L+ +   ++  A D   R  VM +D+D +K +ND LG   
Sbjct: 243 ELRLLATRDPLTDLPNRSLILEMMDATINRVALDGG-RCAVMFLDLDMFKHVNDSLGHEA 301

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  + RR   ++     + RL G+ F +++        +A  A  +  ++  PI +
Sbjct: 302 GDLILKDIGRRFDAVVAGLGAVGRLGGDEFVVLIDRYEREDDLARIARRLITTVKRPIEV 361

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
               +  + S+G A +     T   +L+NA+ AMY  K  G      F  S   +  V +
Sbjct: 362 DGTLVHSSTSVGIACYPVDGATPQGLLRNADTAMYAVKASGPGQWAFFDRSMTENALVRL 421

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             +  L  A+E  +  L Y P + L    I G EALI+W       +    F+ IAEE  
Sbjct: 422 RTEASLRSAIEKGQFVLHYQPKLDLRSNRISGCEALIRW-DLNGDLVPPGRFISIAEETG 480

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           MI  I L++L    +    WR  A   P  I IN++ + L D    +    +I  +   P
Sbjct: 481 MIYDIGLWVLREACQAQRRWRRHAGAVP--IAINVSVRQLKDERFIDDFLDIIQASGADP 538

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +++  +ES +M + E S  LL  +R  G+ L++DDFGT  S L+YL  +P D +K + 
Sbjct: 539 ELLEVEVTESALMSSIEVSAHLLREMRSHGVRLSIDDFGTGYSSLAYLKNLPIDILKIDR 598

Query: 886 SLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           S ++    +  +I R II +A  +    +A+ I  E  +  L   GCD IQ   +  PL 
Sbjct: 599 SFVSDL-PEESSIPRMIIGLAGQMGLRTVAEGIETEGQLAWLRDNGCDMIQGFLIEKPLP 657

Query: 946 FNSILKLLKER 956
               L+ +   
Sbjct: 658 EADFLRFVDAY 668


>gi|190892360|ref|YP_001978902.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697639|gb|ACE91724.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 550

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/453 (28%), Positives = 222/453 (49%), Gaps = 15/453 (3%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           GD+   +     I +++ +L   L  A  D LTG+PNR+ F + LT +L  +A       
Sbjct: 99  GDLFAVVRSEERIDDERATL---LHLATHDPLTGLPNRRQFSEDLTALLQETAGASET-L 154

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           ++M +D+D +K +ND LG A GD +L S   RI   L   D   RL+G+ F +I +   +
Sbjct: 155 SLMQLDLDDFKPVNDTLGHAAGDKLLQSAAMRILACLSSDDRAYRLAGDEFTVISVGPGH 214

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             K    A  +  +   P  +    + V  SIG ++  S   T  E++K ++LA+Y AK 
Sbjct: 215 PAKAHRLADDLVAAFKKPFTINGIAVFVGTSIGISTAPSDGTTPEELMKASDLALYTAKK 274

Query: 687 RGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G    ++F  +              L +A+   + Y+ Y PI       +VG EAL++W
Sbjct: 275 EGRGRAKAFDPAMLELLEQRELLRRSLRMALVQQQFYVEYQPI--AEGGCMVGFEALLRW 332

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G I  + F+ +AE   M+  I  ++LE+   + + W +        + +N+++ +
Sbjct: 333 HHPLLGKIPPASFIPMAEADGMMPEIGAWVLEQACHEAMKWPENYI-----VAVNLSAAE 387

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            L + L + +   +      P R++L  +ESV++     +   L  L  +GI ++LDDFG
Sbjct: 388 FLTSGLTDRISQTLDLVGLPPERLELEITESVLLERTVNNIDTLNTLNVLGIRISLDDFG 447

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T+ S LSYL   PFDT+K +   +T     +K  AI+R I+ +A +++  + A+ +    
Sbjct: 448 TEYSSLSYLKTFPFDTIKIDKYFITDLETDQKSQAIVRCIVNLAHDLDMQVTAEGVETPG 507

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L  +GCD +Q   V+ PL   +I + +  
Sbjct: 508 QAEWLHSVGCDRLQGYLVSRPLPVEAIDEFITR 540


>gi|119472545|ref|ZP_01614593.1| putative orphan protein; putative sensory box protein
           [Alteromonadales bacterium TW-7]
 gi|119444869|gb|EAW26169.1| putative orphan protein; putative sensory box protein
           [Alteromonadales bacterium TW-7]
          Length = 746

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/513 (24%), Positives = 238/513 (46%), Gaps = 19/513 (3%)

Query: 454 PYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN---SNGDI 509
             +   D  +   +++   +       +YE  +   D +      R  P+ +    N   
Sbjct: 235 DVMPAEDATSIMAVINKTLLTNDVQVFEYELDI---DGKIMVFEGRTSPIKDYQSDNPSQ 291

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +A DIT +KK+   +   AF D LTG+PNR+   D+L+  ++     D +   ++
Sbjct: 292 RYIVWVARDITTRKKAELEVERLAFYDPLTGLPNRRMLNDKLSAYVENIKQSD-VTGALL 350

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K+IND +G + GD+VLV L++R   ++   D LAR+ G+ F I+L    ++ +
Sbjct: 351 FLDLDNFKRINDSVGHSAGDEVLVELSKRFNGVVSEKDTLARVGGDEFIILLEYVGDNTE 410

Query: 630 I-----ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  ++        +      V+ SIG      S   +  +LK A+ AMY +
Sbjct: 411 SAILESEKIAKIIQSVFYDKFEVGRLAFQVSCSIGICLIDKSNHLTDNILKFADTAMYRS 470

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K + GN    +         ++  ++ D+  A+ + E    + P I   + +I G EALI
Sbjct: 471 KMKNGNSCSFYDPELQALLENQAELETDIVRAIAHDEFSAYFQPQIN-ANGKITGAEALI 529

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIA 801
           +W HP  G I+ ++F+ IAE+  +I+ +   +L  I   I      Q       + INI+
Sbjct: 530 RWHHPSKGLIAPNDFIPIAEQNGVIQKLQNTVLRDICILINELNSKQLIDDSFKVSINIS 589

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                   L   +  +++    +PS IKL  +ES++ G+       +  L++ G   ++D
Sbjct: 590 QVQFNSTTLKTELLNVVNDYKVNPSNIKLEITESMLSGDIASVISQIDELKQQGFIFSID 649

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L++L     + +K + S +    +K    +I+++II + K++  T++A+ + 
Sbjct: 650 DFGTGYSCLTHLSSFSVNELKVDKSFIDKILDKGTGFSIVQTIINLGKSLNLTVVAEGVE 709

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            E     L  M  D IQ   +A P+ F+  L+ 
Sbjct: 710 TEEQFTVLKTMSVDMIQGYLIAKPMNFDDYLRW 742


>gi|186476873|ref|YP_001858343.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184193332|gb|ACC71297.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 791

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 209/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR S L  L   +            ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEFDLLTGLRNRYSTLQSLRHEVGQPVNVG--HLAILFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+ + +     L+R+ G+ F +++  ++   +    A A+    A P 
Sbjct: 386 NAGDIVLQMTASRLADAVADAGALSRIGGDEFVVVIKGDDVEKRAVTLAEAIIDVFAKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
            +      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +   +S     
Sbjct: 446 EVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPHLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+ + +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALADQQLFLAYQPKIDLARRCITGFEALVRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++    R +  W+ Q     + + +NI++      +L E +   I +T  
Sbjct: 566 TGLIVPIGDFVIRTACRQLAQWQQQGYDT-LSLAVNISAVQFWRGDLYETISHAIEETGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +  R++L  +E+ +M  P+     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 AARRLELEITETAMMEYPDLVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFVQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+    I  LL+ 
Sbjct: 745 RPVPAEGIPALLER 758


>gi|26987880|ref|NP_743305.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982585|gb|AAN66769.1|AE016305_4 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 754

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 222/442 (50%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L      +N R  VM +DID +K+
Sbjct: 276 LSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASEN-RLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +   I    +  D++AR  G+ F  ++ S N+  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEF-CVVTSLNSRDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  PI+L  R + +T SIG + +     T+ E+LK+A+LA+Y +K  G N +  F  S
Sbjct: 394 QRMKDPIDLGGRRMVMTTSIGISIFPDDGSTAEELLKHADLALYQSKDNGRNSLNFFNDS 453

Query: 699 ---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                     + +E     +E   L + Y PI  L   ++  LEAL++W HP+ G +   
Sbjct: 454 LKARASIALQLEEELRLALLEERGLCVHYQPIFDLRSGQVAKLEALVRWQHPQHGLLGPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L++L     D+   +       + + +N ++  L  +EL   ++
Sbjct: 514 RFVGIAEANGLIIDLDLWVLRHACADLAHLQRHGYGE-VQVTVNCSAVTLSHDELPNEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +     +P  ++L  +E+ ++G+ +R+  LL R+R +G++L++DDFGT  S L+YL  
Sbjct: 573 KALFHAGLAPRHLELEVTENALVGDIQRTVSLLKRVRALGVALSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + +     ++K   I+++II MA  +   ++++ +        L   GCD
Sbjct: 633 LPLDVLKIDRTFLQDVPGSQKDREIVQAIIAMAHTLHLRVVSEGVETAEQQAFLESHGCD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   +  P+    +  LL+ 
Sbjct: 693 YLQGYLLGRPVPLAELRPLLER 714


>gi|209550345|ref|YP_002282262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536101|gb|ACI56036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 782

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 139/684 (20%), Positives = 269/684 (39%), Gaps = 42/684 (6%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
                L   S         I+    A + ++ T  I            L           
Sbjct: 130 VYYPALGLFSGLKQEEVVFISIFIFAVLAVFGTALIGNRFFVIQPLMRL----------- 178

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                +  T++L +           +   +   F  +Q  L +    + +     R +  
Sbjct: 179 --TAAIEATRQLGSRHHVDWQSNDEMGR-LARSFNEMQTKLESE--EKELKFAHRRATDI 233

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +  +++  D        +       G    ++ G  RN+   +    RD F+     
Sbjct: 234 YNLTPAMLFSLDEEDRITAVSDYWLLATGYNRAAVIG--RNFADLVTSTTRDKFKR---- 287

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMI-IRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                   +    +    D +   ++ +     + ++  +   + +  D+TE K S +  
Sbjct: 288 --RQAESGIAVTVKFVCLDGRTMDVLIMESEAEAGAHDRLS--LSVMTDVTELKASEDRN 343

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LTG+ NRQ F   L   +  +          + +D+D++K IND +G A GD
Sbjct: 344 HRQAITDHLTGLLNRQGFEAVLDNKIAAADAAGQ-ELACLFVDLDRFKWINDNMGHAAGD 402

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             L+ L  R+   L   D  ARL G+ F I+L +++   +       +      P     
Sbjct: 403 MALIELVERLKTYLAPSDEAARLGGDEFAILLPAKDAEKRARMMCEQIASIFETPFAPD- 461

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
             + ++AS+G A +     T++E+L+ ++LAMY  K  G N  + F  +       R  I
Sbjct: 462 --MHLSASVGIAIYPHHAATAAELLQKSDLAMYAKKRDGKNGAQLFDNAMLDRARSRAEI 519

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + ++   + ++       PI+ L    I G EAL++ +HP+ G +  +E + +AEE   I
Sbjct: 520 EANIESGLVDNWFEAFLQPIVNLNGRGIAGFEALMRLNHPQKGLMPPAEIISVAEETGKI 579

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   ++E+   ++      + M   ++ IN +        L   + A++ +    P R
Sbjct: 580 VRVGNVIMEKAIANLAKISRISGMQDSYLAINFSPLQFE-PALPARLAAIVGRHGIHPER 638

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +E+V+M +  + R+++  LR+ G  + LDDFGT  S LSYL   P D +K + S 
Sbjct: 639 IVVEITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSF 698

Query: 888 MTGST-------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
                       +K   ++  I  ++  +  T+IA+ I  E + + L +MG DY Q    
Sbjct: 699 TRAINDGDDDVRQKSRMLIEGITTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLF 758

Query: 941 ASPLGFNSI-LKLLKERFPLVKNT 963
             P     +  +L+     + + +
Sbjct: 759 HRPKHAAVLIEELMASEAAVARAS 782


>gi|157373398|ref|YP_001471998.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
 gi|157315772|gb|ABV34870.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sediminis HAW-EB3]
          Length = 703

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 114/549 (20%), Positives = 233/549 (42%), Gaps = 8/549 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  S+ +  S +  +  D     +     +  I G ++  +       +          
Sbjct: 153 KELLSITLEDSAEAAYITDAEHRIIAVNKAMCRISGYSADQLLHKNAEVIDL---KRHTA 209

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              +  +     RG  Q E   + +D          R +     + + Y+ I +DI+ +K
Sbjct: 210 AEEMEHNNALEERGNWQGEVWKQRSDGTEFPAWKSCRKILAE--ERVYYVTIFSDISTKK 267

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   A  D LTG+PNR      L   L            +M +D++ +K IND  
Sbjct: 268 KLEAKLTEQAMFDTLTGLPNRHHLKLLLNQALQEIKETPGKMGALMFLDLNGFKNINDCF 327

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL  ++ R+         +ARL G+ F ++L   N   ++ D +  +      
Sbjct: 328 GHATGDKVLQLVSARLEASCIEKADIARLGGDEFTLVLRDCNGHQEVEDISQQIMSLFEA 387

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRS 702
           P  + ++++ +  SIG A +      ++++L  A+ AMY AK    +    +  +     
Sbjct: 388 PFEIDDQKLYLGTSIGIALFPEHSSEANKLLSLADTAMYSAKQSPEHVLFYNNSMHEEAE 447

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ I  +L  A    +  L Y  I+ L    ++G EAL++W  P    +++++F+ + E
Sbjct: 448 QKLTILSELRHAHNLKQFSLAYQVIVNLECNSVIGAEALLRWQKPDGEILNATDFVPLLE 507

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  ++  I  ++L++    + +WR Q + P +   +N++   L   +  + +   ++ + 
Sbjct: 508 EAGLLITIGQWVLKQACLQVATWRTQ-HAPDLKACVNVSPMQLEHPDFVQQVTEALTYSQ 566

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E  ++  P+R +  L  L+  GIS+ +DDFG   S LS LG +P D++K
Sbjct: 567 LPANALVLEITELALLRQPQRVKKTLTLLKSKGISIAIDDFGAGLSSLSKLGSLPIDSLK 626

Query: 883 FNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +       +  +   + +++I +A+ ++ + + + I  +   + L  MG  + Q     
Sbjct: 627 IDAGFAHRLSEPQGKELCQAMIKLAQALDISFVVEGIETKQQKEILKNMGKGFGQGYFFG 686

Query: 942 SPLGFNSIL 950
            P       
Sbjct: 687 HPKEAARFT 695


>gi|295096847|emb|CBK85937.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 573

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/422 (28%), Positives = 216/422 (51%), Gaps = 12/422 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  + + D+LTG+ NR  F D L   L+L A + ++  TVM+ D+D++K++ND  G   
Sbjct: 149 KLEYDVYHDSLTGMKNRLFFWDDLNK-LNLQAEEKHISVTVMLFDLDRFKEVNDTYGHDA 207

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++ R+  L +F +   RL G+ F  +      +  ++  A  +  SI+ P  +
Sbjct: 208 GDLLLREVSTRLNALSRFSETFYRLGGDEFAFLSSGLTEAAAVSR-AREISDSISKPYTI 266

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRV 705
             + I +   +G      ++  S  + K A+LA+Y AK  G   ++ FR        +  
Sbjct: 267 NNQLIKIATCVGIVLS-DNERRSDYLYKFADLALYEAKKEGSQQIKVFRQRMLQKLQESR 325

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ D+  A+EN E  + Y PI+  + +EI G EALI+W HP  G +S   F+  AE+  
Sbjct: 326 TLENDMARAIENDEFIVYYQPIVNSVSKEIYGYEALIRWMHPVKGMLSPDSFIFAAEKTG 385

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           MI  I   +L+   R+ +SW       P  I +N++   L        +Q+++++T    
Sbjct: 386 MINEIGKTVLKLACREAVSWA-----VPARISVNVSPVQLGSKSFINTVQSVLAETGLPA 440

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +R++L  +ES +  +      +L +LR +G+ +++DDFGT  S LS L  + FD +K + 
Sbjct: 441 NRLELEVTESSLFSDRNNPIAILKKLRSLGVRISIDDFGTGYSSLSRLSELNFDKIKIDK 500

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +   +  E  + I++ I  MAK++   +IA+ +  E  ++ L  +GC+ +Q    + P
Sbjct: 501 SFVNPISTQEDALNIVKLITGMAKSLNMGVIAEGVETEEQLERLQALGCELVQGYLFSKP 560

Query: 944 LG 945
             
Sbjct: 561 QP 562


>gi|260466691|ref|ZP_05812878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Mesorhizobium opportunistum WSM2075]
 gi|259029554|gb|EEW30843.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT
           sensor(s) [Mesorhizobium opportunistum WSM2075]
          Length = 816

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/764 (19%), Positives = 299/764 (39%), Gaps = 57/764 (7%)

Query: 224 MAWVVLGYISIDFGFLSKLVN---------LPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           + W+++   S  FG  +               + +  +       +++ +        L 
Sbjct: 47  LVWLMIAATSTGFGIWATHFIAMLAFTPGIPSAYDPELSVLSLAASVALTAAGMWIATLR 106

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
               H  VG     G         M+ +          + +A+ +L              
Sbjct: 107 DEFDHHLVGGAILGGGIAAMHYIGMAAFEVQGRIEWNLLLVAASLLSGVALAALALRTVL 166

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDI------------IQPALVGGLVLIVILI 382
            R  LL  +   + +      +         I            I+P           L+
Sbjct: 167 RRPSLLATSVGALLLTLAICILHFIGMGAVSIFPDSSIVISEYTIEPTSQAFAAAAATLV 226

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +    L      +    + +R       + + +   D     V+    +  + G  +
Sbjct: 227 ILVLSASALWIDLRFRRQKLEVDRMHGLANAAVEGLIVCD-GNRIVSANDSMGKLTGTVA 285

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRI 499
             ++G   + L               D         L+ + R   +++ D     + +  
Sbjct: 286 AMLNGTELDGL--------------FDEHAVSGTASLEGQPREAELKSRDGTRIPVELIA 331

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           R + +  G     I +  DI E+KK+ + IL  A  D LTG+ NR+SF  RL   +    
Sbjct: 332 RSI-DYCGKPHNVIAV-RDIRERKKAEQEILRLAHFDPLTGLANRRSFSGRLDAEIASMN 389

Query: 560 TDDNLRPTV-------MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
              N    V       +++D+D++K++ND+ G   GD +L  +      +L+   +LARL
Sbjct: 390 RIGNTGAGVKGRHLALLLLDLDRFKEVNDLYGHGAGDAMLQRVASCAAGVLRHGQMLARL 449

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F II  +  +       A A+  ++            V+ASIG A +       + 
Sbjct: 450 GGDEFAIIAPNLPDPQAAGRIAGAVLAAMREENRAAVGGGLVSASIGIAIYPLDADDQTS 509

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++ +A+ A+Y AK  G +    F  S      D+ +++ +L  AV   E YLVY P   +
Sbjct: 510 LISHADTALYRAKTEGRDTYRYFEASMGAEARDKRVMEHELRQAVARGEFYLVYQPQKEI 569

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               +VG EALI+W HP+ G +S + F+ +AE+   I  I  ++LE    + + W +   
Sbjct: 570 SSGRMVGFEALIRWRHPERGEVSPAIFIPVAEDSGAIGQIGDWVLEAACEEAVRWEN--- 626

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ + +N+++  L +      +   + KT  + +R++L  +E+ ++ +  R+   L +
Sbjct: 627 --PLMVAVNVSAVQLHNPNFSRKVHETLLKTGLAATRLELEITETALVKDMPRALATLRQ 684

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKN 908
           ++ +G+ + +DDFGT  S LS L   PFD +K + S +          AI+R+++ + + 
Sbjct: 685 VKALGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDSSFIKAVDTNGQVAAIVRAVLGLGRG 744

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   ++A+ +    ++K L    C+  Q  ++  P    +   L
Sbjct: 745 LGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDL 788


>gi|83859347|ref|ZP_00952868.1| hypothetical protein OA2633_13120 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852794|gb|EAP90647.1| hypothetical protein OA2633_13120 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 686

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/653 (20%), Positives = 260/653 (39%), Gaps = 32/653 (4%)

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD--------- 363
           +    + +      +    +  E   ++  AW+++    +   +  T  +          
Sbjct: 17  LLAGLVCVISCLLSMRLLRRSEESDSVVQVAWLVVTATCLSAGIWSTHFIAMLGYRPSAT 76

Query: 364 ------NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
                    +   ++    LI   +         A      G+   G   +  +  + D 
Sbjct: 77  VSLQVDETALSALIIMCGALIGCYVATLKFTFAKALAGAVIGVSVTGMHYAGMMAYNLDA 136

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +  WD+    V  +   A   G  +          L  +          ++         
Sbjct: 137 IVAWDM--RYVIASVVFAVFFGALAFEASEKFDKGLHRLIPGGL-LAIGVVSLHFTGMGA 193

Query: 478 RLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                  V    D     ++     ++          G A + + ++++   +   A  D
Sbjct: 194 MTVVSLGVSEGLDPVTFQILALTTAVTTLVVVGAGGAGYAVEASLRERTDRRLRHLALHD 253

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F   +   ++           V+VID++++K+INDV G   GD VL  + 
Sbjct: 254 IVTDLPNRACFTALVEQAIENRK---GKNIAVLVIDLNRFKEINDVWGHQAGDAVLCDIA 310

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+    +     ARL G+ FGI+   E  +  + +    +      P+   + EI   A
Sbjct: 311 DRLRGHERPGGYAARLGGDEFGIVFPVEGETELVEEL-KLIESLFMTPVRHADFEIVTNA 369

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLA 714
           S+G A +         +++NA+LAMY AK             +      R  + +DL  A
Sbjct: 370 SLGVAVYPEDGRDCETLMRNADLAMYKAKTDPLNRIQHYEHALGEAVRQRRELAQDLRTA 429

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E  EL + Y P I L   E+ G EAL++W HP  G IS +EF+ +AE   +I  +  ++
Sbjct: 430 LETGELRMFYQPQIDLKSGEVCGYEALVRWPHPVRGMISPAEFVPLAEANGLIGRLGDWV 489

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE    ++  W          + IN+++  L D  L   +   +  T  SPS++++  +E
Sbjct: 490 LETTCEEVAQWPGAP-----KVAINLSAIQLNDPHLVGKVLQAMVSTGLSPSQLEIELTE 544

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE- 893
           + ++ +  +S  +L R++ +G+S+ LDDFGT  S L  L   PFD +K +     G ++ 
Sbjct: 545 TALIHDLGQSLNVLRRIKALGVSMALDDFGTGYSALETLRRFPFDKIKLDKGFTDGLSDG 604

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +  A++ +++ +A N++  ++A+ +     +  L  MGC+  Q   +  P  
Sbjct: 605 GRSRAVISAVVTLAHNLDIPVLAEGVETADQLDLLNMMGCEQAQGYLIGRPAP 657


>gi|330991137|ref|ZP_08315091.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
 gi|329761958|gb|EGG78448.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
          Length = 740

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/443 (27%), Positives = 214/443 (48%), Gaps = 8/443 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  + E I   A  D+LTG+ NR S    + +++  S  D N +  + ++DID+++ IN
Sbjct: 282 EQNATKEHISHLANFDSLTGLLNRSSVHKVIESMI--SKQDGNRQFAIFMLDIDRFRDIN 339

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV +  RI  +     +++R  G+ F +++ +  N      FA  +  +
Sbjct: 340 DALGHVYADQFLVEIAARIRAISLDGYVVSRSGGDEFVVVVPNCPNKE-ATAFAERLLAT 398

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ + E  +T++ SIG +++  +   S  +L  A++A+  AK  G        +   
Sbjct: 399 IAKPMQIGENTLTISCSIGISTYPDNGPDSESLLSTADVALRQAKEDGRGTFRFANLEKN 458

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 459 QVAQDRLVLGSALRDSLAKGMLNLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSRFI 518

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R I+ W       P  + +N+++    +  L E + AL+
Sbjct: 519 AVAEETGQIEAIGRWSLLESCRQIVKWDRDGVHVP-TVAVNLSAVHFRNRALPEHIAALL 577

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 PSR+ +  +ESV+M +   +  +L  +R +G  L++DDFGT  S LS L  +P 
Sbjct: 578 KDHNLKPSRLTVEITESVMMDSSSDTEEVLQSIRNLGCGLSMDDFGTGYSSLSRLTRLPL 637

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L  + CD +Q
Sbjct: 638 TEIKIDRSFINDFEYDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRALLEELNCDVMQ 697

Query: 937 DSHVASPLGFNSILKLLKERFPL 959
               A PL  + + K +K    +
Sbjct: 698 GYLFAKPLAPDDLEKWVKHHQTI 720



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 4/170 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDR 461
             E    A+  + D     D   D +      A + G+    + G   N L P +H    
Sbjct: 7   SAEVLLSALEQAIDATIIIDDRNDVIFFNNAAANLWGMDKAEVLGQNVNVLVPALHRAGH 66

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D F          R      E     A+ ++    + +  +    G I  Y+G+  ++T+
Sbjct: 67  DAFIDRNRESGFNRIVGTSREVEFTRANGEYVCGELSLSKVITDTGRI-FYMGVMKNVTD 125

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +  S +  +     D L  + +     D    +     +       V+++
Sbjct: 126 E--SQQRKILILQNDVLQALASDMLIQDVADLLCRRVESFVPGTVAVLML 173


>gi|213052592|ref|ZP_03345470.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 543

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 120/551 (21%), Positives = 240/551 (43%), Gaps = 21/551 (3%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNF--RTILDS 470
             ++   D                GL    + G    + ++       R+    R  +++
Sbjct: 1   NSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSR-----REAVASRHYIEN 55

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           F        + E  ++    Q  ++       + S  + +  I    DITE++++ E + 
Sbjct: 56  FFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGTDITEERRAQERLR 114

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D +TG+PNR +  + +   +  +         ++ +D+D +KKIND  G   GD 
Sbjct: 115 ILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLDLDNFKKINDAYGHMFGDQ 171

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L +++  +   L+   +LARL G+ F +++    +   +   A  +   +  P  +   
Sbjct: 172 LLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEAVASRILTRLRQPFRIGLI 230

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIK 708
           E+    +IG +        S  +++ A+ AMY+AK  G      F   ++    D   + 
Sbjct: 231 EVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVFSPEMNQRVFDYHWLD 290

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+EN +L + Y P I     E+  LEAL++W  P+ G I   EF+  AEE  +I 
Sbjct: 291 TNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIV 349

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++  + R I  WRD+     + + +N +++ L D  L   ++  +    +    I
Sbjct: 350 PLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTLFTALKQALYDLNFEYCPI 407

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S LS L   P D VK + + +
Sbjct: 408 DVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFV 467

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P+  
Sbjct: 468 RDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPA 527

Query: 947 NSILKLLKERF 957
            S  +  K   
Sbjct: 528 VSFERWYKRYQ 538


>gi|163733632|ref|ZP_02141075.1| sensory box/GGDEF family protein, putative [Roseobacter litoralis
           Och 149]
 gi|161393420|gb|EDQ17746.1| sensory box/GGDEF family protein, putative [Roseobacter litoralis
           Och 149]
          Length = 744

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 130/600 (21%), Positives = 263/600 (43%), Gaps = 25/600 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +     G     ++     ++  ++      Q       +       S DI W+ D+   
Sbjct: 143 VPHLDFGSEDRALLAKLAVLVVDLMEGRASHQASLEAKSKLEDFTTASLDIFWETDVEHR 202

Query: 427 RVTTTPDIATILGLAS---------GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
               +    T+LG+++          SM G  R  +  +    R+ +R+ L   +  R+ 
Sbjct: 203 FTRLSS--ETMLGVSASANPWDAGLESMVGHKRWDILNVD-TTREPWRSHLQ-LLDARKP 258

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                +  +  D +     +  RP+ + +G  L Y G   ++TEQ++S       A  D 
Sbjct: 259 FRDLRY-AKEFDGKLMHFSVSGRPVFDKDGTFLGYRGATQNVTEQEQSRLEAERLANSDP 317

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+ NR+ +   L   L++   D      +++ D+D++K IND LG AVGD +L+ + +
Sbjct: 318 LTGLANRRCWNTALRDRLNV---DKVPPTGILLFDVDRFKDINDALGHAVGDRLLIDIAK 374

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           RI        + ARL G+ F +++   N   +    A  + +++  P  +    + V  S
Sbjct: 375 RIVNCSVKTSLAARLGGDEFALLIEGTN--EETVRSADCILQAMTRPFEIDGHNLHVELS 432

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           IG       +     ++ +A+LA+  AK +G      +  S  + +     +      A+
Sbjct: 433 IGIKLVGPQEHECDRIMVDADLALRTAKLQGRRRHVVYDPSMRKENDSRITLTAQFERAL 492

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +N+E  L + P +RL ++ IVG+E+L++W+HP+ G +  ++F+   E           ++
Sbjct: 493 QNNEFELHFQPQMRLSNDTIVGVESLLRWNHPERGLLYPNQFLNALETSAFDIPAGQQVI 552

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   +    W+D     P+ + IN+++  L  + L + +   +++   + + I++  +E 
Sbjct: 553 DLACKQARIWQDLG--TPVRVGINVSASQLYGDNLPKVLDDAMTRHGTAATMIEVEVTER 610

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
           V +GN E+   +L  +R++GI++  DDFGT  + LS L   P D VK +   +T   +  
Sbjct: 611 VALGNVEKITSVLEAIRELGITIAFDDFGTGFASLSSLMQFPLDRVKVDQRFITDLHKNP 670

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +   +I +  ++   +IA+ +        L +  CD +Q    + P+        L
Sbjct: 671 ANTRLTSGLIRLCHSLGFEVIAEGVEKHAHETFLRKQNCDEVQGYLYSKPVDARQTTDFL 730


>gi|89092170|ref|ZP_01165125.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Oceanospirillum sp. MED92]
 gi|89083905|gb|EAR63122.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Oceanospirillum sp. MED92]
          Length = 731

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 219/468 (46%), Gaps = 9/468 (1%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +  +  +    +S + G     I    +  E+ +++E     A  D LTG+ NR  F  +
Sbjct: 266 EVIYYWLVAFLVSLATGMAAYLIAT--NYREKLQAIETATYRANYDVLTGLSNRYHFSQQ 323

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L +++       ++   +  ID+D +K++ND  G   GD++L     R+  +++  D++A
Sbjct: 324 LQSLIYEHQRHGHM-FALFFIDLDYFKEVNDNWGHPAGDELLRLFAHRMVSIVRSDDLIA 382

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL+G+ F I+L    ++ +    A  ++  +  P  +  + ++VT S+G A + +   + 
Sbjct: 383 RLAGDEFVIVLKDLESATQAELLAEKLQLELGEPYLINGQYLSVTHSLGIAMYPADGGSM 442

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             +L+NA+ AMY AK  G N +  F           V +  ++   +   +  L   PI+
Sbjct: 443 ELLLQNADRAMYEAKRAGKNRIFFFNDHLSQEVKRHVQVHNEILDGLRKGQFELYLQPIM 502

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L    +   EAL++W HP+ G IS  EF+ +AE+   IK +  ++L+         R+ 
Sbjct: 503 ALSSGRVSKCEALVRWVHPERGLISPVEFIPVAEQTGAIKPLGEWILDEACHLSNQLRES 562

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
            +   I + IN +  +    +  +    +I         I    +ES++M   +     +
Sbjct: 563 GH--SIQVSINRSVAEFYPKDADQRWLQIIDSHNVPHDMIVFEITESLLMDGGDSQLDKI 620

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             LR  GI+ ++DDFGT  S ++YL + P D +K + S +T     E+   ++  II M 
Sbjct: 621 NMLRGKGIAFSIDDFGTGYSAINYLRHYPVDYLKIDRSFITDLLEDEQDRTLVEVIIKMG 680

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +   ++A+ +  +  +  L   GCDYIQ  ++  PL ++  +  L 
Sbjct: 681 QTLGIRVVAEGVEDQAQMDMLKEFGCDYIQGFYLGKPLPYDEFIAFLS 728


>gi|168788396|ref|ZP_02813403.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC869]
 gi|261224271|ref|ZP_05938552.1| RNase II stability modulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257473|ref|ZP_05950006.1| RNase II stability modulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189371806|gb|EDU90222.1| sensory box-containing diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Escherichia coli O157:H7 str. EC869]
          Length = 661

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTAYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|323525341|ref|YP_004227494.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323382343|gb|ADX54434.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 574

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 121/560 (21%), Positives = 242/560 (43%), Gaps = 22/560 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   ++  D      T    +  + GL++  + G  R +       +    R  L 
Sbjct: 15  ALAAAPFGMFICDGNGTFQTVNMALEKLTGLSADELVGR-RGFESLHDPAELARRRAEL- 72

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWM---------IIRIRPMSNSNGDILR---YIGIAN 517
             +     R + E+  R        +          +   PM            Y+G+  
Sbjct: 73  PCLAVIGARYEGEWTYRRRSGTPVRVVLALSPLSPPLPPLPMPGDAARPPGEVLYVGVVV 132

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T   +S   +   +  D +T +PN+  F +RL   +       +   TV++ ++   +
Sbjct: 133 DMTRYAQSEARLWYLSHHDGVTRLPNQTLFTERLELTIARCQRSHSA-FTVLIAELGHLR 191

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ D LG+   + VL  +  R+  L      +A + G++F +++     +          
Sbjct: 192 KLRDALGLHAAELVLQIVGERLRGLFPNDGTIASIGGSQFALLINETGAAADAFAAEA-- 249

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              IA  I+     + + ASIG A++      ++ +++ A +A+  A    GN V  F  
Sbjct: 250 LGRIAESIDYGGTALNIAASIGIAAYPDDGDDAATLMRRAGVALSAAAAVHGNAVRRFST 309

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 + R  I+  L  A++  +L+LVY P + L +  I  +E L++W+HP+ G IS +
Sbjct: 310 ALEGQAARRFQIETMLREALQRQQLHLVYQPQVTLANGRIAQVETLLRWNHPQRGMISPA 369

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE  +I+ I  +++    R+           P  + IN++ +     +L E + 
Sbjct: 370 EFVPVAEESGLIEQIGEWVIRTACREAGKLLRLTGNLP-RVAINVSPQQFQRADLFETIH 428

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +      PS +++  +E  ++G+ E++   L  LR +G+ + +DDFGT  S L+YL  
Sbjct: 429 EALDDAALHPSYLEVEITEGALLGDTEQALHTLHALRDLGVEIAVDDFGTGYSSLAYLTR 488

Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P + +K + S +T  +      A++ +II MA  ++  + A+ +       +L  +GCD
Sbjct: 489 FPLNRLKIDRSFVTRMSGDPQCLALVGAIIAMAHALKLRVTAEGVETPEQAAQLQALGCD 548

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q    + P+  + +  L+
Sbjct: 549 EAQGFWFSRPVTASGLRNLI 568


>gi|297202554|ref|ZP_06919951.1| integral membrane phosphodiesterase [Streptomyces sviceus ATCC 29083]
 gi|297148138|gb|EDY53953.2| integral membrane phosphodiesterase [Streptomyces sviceus ATCC 29083]
          Length = 1066

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/806 (18%), Positives = 313/806 (38%), Gaps = 60/806 (7%)

Query: 198  VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
            +   L        +   +    P+ A   + L Y  +D   +S ++ L      + R   
Sbjct: 235  IGGSLLTLSWSLALAQAAKSEGPSVARTALSLAYPLLDIALVSMVLALHFRRSAVNRTAV 294

Query: 258  EIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASI--AR 312
              A+ +  +  +   L  +       + G +  +G    ++L   + +           R
Sbjct: 295  NTAICALALTVMCDALFTSPLLHNSYRSGQLLDAGWFAGSLLLAYAPWAAPRRPEGEPQR 354

Query: 313  ITLASIVLYYTYFIIYHGMKGYERAVL------------------------LIPAWILIF 348
                + V+         G++ +  A                          L P      
Sbjct: 355  PAGHTRVVREHLPRQRFGIQHHPSAQGPQGVQGGDHGRYPATRPITGSLAALTPYLAAAV 414

Query: 349  IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                 L+  +  R  + ++   L GG V++ +++   ++  +L     +Q +        
Sbjct: 415  CTLGILYNVLNGRSVDRVVL--LTGGTVVLALVMRQGIM--LLDNITLTQELAQKENHFR 470

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
              V GS D++            +P  A + G  +  + G        IH  D       +
Sbjct: 471  SLVQGSSDVIMIAAPNGILRYVSPAAAGVYGRPAEELVGT--ELAGLIHPEDLGCVVHEV 528

Query: 469  DSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              F+          + E R R+ D  +  +   +             I  + D+TE+ + 
Sbjct: 529  RRFLAANPLEEATTRIECRFRSGDGGWLNVESTVNRHHG------GLIFNSRDVTERVRL 582

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               +  NA  D LT +PNR  F  R+   L       +    V+ ID+D +K +ND +G 
Sbjct: 583  QAQLQHNAEHDPLTDLPNRALFTRRVQQALS-GRRSSDRGTAVLFIDLDGFKAVNDTIGH 641

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK------IADFAIAMRK 639
              GD++LV   RR+ + +++ D  +RL G+ F  +++ +    +      I + A  +R 
Sbjct: 642  QAGDELLVQAARRLQDAVRYGDTASRLGGDEFAALIVGDGTRDRTAREGNILELADRLRV 701

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +++ P  +   ++ V ASIG A +    + + E+L+NA+LAMY AK  G   VE +    
Sbjct: 702  TLSQPYLIDGNDVRVAASIGVA-FAEPGLGAGEILRNADLAMYRAKAGGKGRVELYAPQM 760

Query: 700  FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +       +   L  A+ + E  L++ P++ L D  I  + A  +W   +    + +EF
Sbjct: 761  QQDVVRKAELATRLRAALHDGEFALLHQPVVCLEDGRITSVCAQARWRSSQGVLFTPAEF 820

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQA 816
            + +AE+    + +  ++LE                P  + + ++++ LLD  L    ++A
Sbjct: 821  LRVAEDSDKTQELGRWILEEAVEKAAERAAAGLTVP--VAVRLSAQRLLDRSLPLGSVEA 878

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+++       + +  S++    + +     L  +R++G+ + LD FG+  + ++ L  +
Sbjct: 879  LLTRHGLPSGSLVIELSDADPRVSLDELERRLTAIRRVGVRIALDGFGSGYAAITALRKL 938

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K + SL+ G  E      I   ++ +A ++    +A  +     +  L  MGC +
Sbjct: 939  PVDVLKLDRSLVEGVVESARLHKITSGLLRIAGDLGLQSVADGVDLPEQVVALRAMGCTH 998

Query: 935  IQDSHVASPLGFNSILKLLKE-RFPL 959
             Q    + PL    + + L    +P+
Sbjct: 999  GQGMAFSGPLDEYRLRRALASGHYPV 1024


>gi|289665697|ref|ZP_06487278.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289671291|ref|ZP_06492366.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 705

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 230/464 (49%), Gaps = 13/464 (2%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P ++  G+++   G  ++   +      +   A+ D LTG+ NR  F + L  +L+ + 
Sbjct: 246 HPRNDEIGELISAFGRMSESIARH--DREVRHMAYTDALTGLTNRLGFREGLDHLLNTA- 302

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK----FPDILARLSGN 615
                +  ++  DID +K++ND LG   GD+ L+    RIG  +        ILAR  G+
Sbjct: 303 RSTGSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRIGRAVAALGGDDAILARFGGD 362

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L S + SL  A  A  +   ++ P+N+  RE+ +  SIG   +      ++ +LK
Sbjct: 363 EFVILLQSGDVSLLAAQLAERLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATALLK 422

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           N ++AMY AK  G N    +          RV ++ +L  A E  EL LVY PI R  D 
Sbjct: 423 NGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSDR 482

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +VG+E L++W HP  G I+ S F+ IAE+  +I+ I   +L     +   W        
Sbjct: 483 VLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWP--LVGEG 540

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +FI +N++ + L   +L + +   ++++    +R+ L  +E+ V+G+   +  LL +L +
Sbjct: 541 LFISVNVSPRQLRSGDLIDTVAECLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR 600

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+ + LDDFGT  S LS+L  +P D VK + S +         +A+  +II MA ++  
Sbjct: 601 TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI 660

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           T++A+ I  E     L   GCD  Q    + PL    ++KL+  
Sbjct: 661 TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSSADMVKLIAA 704


>gi|170749699|ref|YP_001755959.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656221|gb|ACB25276.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 593

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 120/577 (20%), Positives = 238/577 (41%), Gaps = 38/577 (6%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-------- 443
                +  +         A+      +  +D     V +      I  +           
Sbjct: 30  RLAALNAALSEQIRLFEGALQNMNQGLCMFDAQSRLVVSNKRYRDIFNIPQDMVLTGMAQ 89

Query: 444 -----SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                ++                 + R  L +        +  E      D +   +  R
Sbjct: 90  HAICSALVARGLYSPEVTVAEIERSTRAALQAA---EPAPITRELC----DGRTLAINHR 142

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              + +  G    ++    DITEQ++S E I   A  D LT + N ++       ++  +
Sbjct: 143 ---VMDGGG----WVSTFEDITEQRRSAERIAHLAHHDALTDLANTRAMRQGYRDLIA-A 194

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             D+     +  ID+D++K +ND  G A GD++L  +  R+    +  D++ARL G+ F 
Sbjct: 195 QDDERPLLAMYYIDLDRFKFVNDTYGHAAGDELLQEVAARLRRNTRRGDVVARLGGDEFA 254

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            ++    ++      A  +   ++ P +L    +   ASIG A      +    +L +A+
Sbjct: 255 -LVHRVVDAAAATSTAQRLVNVLSEPFDLASGRVHTGASIGLAIRAVQDLDMDPLLHDAD 313

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+ H+K  G      F  S   +   R  I+ DL  A+   +  L Y  ++   D  + 
Sbjct: 314 LALRHSKTEGRGVFSVFEASMSEAFEARRQIEADLQAALAADQFELHYQTLVDARDGHVA 373

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W HP  G +    F+ +AEE  +I  +  ++LER  RD ++W +      + +
Sbjct: 374 CVEALVRWRHPTRGLVPPLSFIPLAEETGLILPLGRWVLERACRDALAWPES-----VDV 428

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++S  +        + A++++T  + +R+++  +E+ ++   E +R  L  L   GI
Sbjct: 429 AVNVSSVQMRQKGFGAEVLAVLAETGLAAARLEVEITETSLLEESEATRENLATLHGAGI 488

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  S LSYL   P D +K + S M+   ++    AI+R++  +  ++  T +
Sbjct: 489 RIAMDDFGTGYSSLSYLRRFPIDKIKIDRSFMSEAETSADARAIIRAVAGLGVSLGITTV 548

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + +     ++     G   +Q   +  P    S+ +
Sbjct: 549 VEGVETAQQLELARAEGVGQVQGYLLGRPQPQASLSR 585


>gi|313497503|gb|ADR58869.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 754

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 221/442 (50%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L      +N R  VM +DID +K+
Sbjct: 276 LSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVEHQASEN-RLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +   I    +  D++AR  G+ F  ++ S N+  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRNHDLVARFGGDEF-CVVTSLNSRDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  PI+L  R + +T SIG + +     T+ E+LK+A+LA+Y +K  G N +  F  S
Sbjct: 394 HRMKEPIDLGGRRMVMTTSIGISIFPDDGSTAEELLKHADLALYQSKDNGRNSLNFFNDS 453

Query: 699 ---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                     + +E     +E   L + Y PI  L   ++  LEAL++W HP+ G +   
Sbjct: 454 LKARASIALQLEEELRLALLEERGLCVHYQPIFDLRSGQVAKLEALVRWQHPQHGLLGPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L++L     D+   +       + + +N ++  L  +EL   ++
Sbjct: 514 RFVGIAEANGLIIDLDLWVLRHACADLAHLQRHGYGE-VKVTVNCSAVTLSHDELPNEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +     +P  ++L  +E+ ++G+ +R+  LL R+R +G++L++DDFGT  S L+YL  
Sbjct: 573 KALFHAGLAPRHLELEVTENALVGDIQRTVSLLKRVRALGVALSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + +     ++K   I+++II MA  +   ++++ +        L   GCD
Sbjct: 633 LPLDVLKIDRTFLQDVPGSQKDREIVQAIIAMAHTLHLRVVSEGVETAEQQAFLESHGCD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   +  P+    +  LL+ 
Sbjct: 693 YLQGYLLGRPVPLPELRPLLER 714


>gi|83648382|ref|YP_436817.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636425|gb|ABC32392.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 833

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/423 (26%), Positives = 209/423 (49%), Gaps = 7/423 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR     RL   +         + ++ +ID+D ++ IND  G  +GD ++V 
Sbjct: 399 HDALTGLPNRLHLERRLELAIRNVRYGVRDQFSLFLIDVDNFQHINDAYGHELGDQLIVD 458

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++R+  L+    +L R  G+ F I+     +  ++  +A  + ++   P N+   EI++
Sbjct: 459 LSKRLESLIPHTAVLCRPGGDEFAILFKGVRDKKQVIQYAERLLEACETPFNIGMDEISI 518

Query: 655 TASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
             SIG A+++    +    E+ K A++A++ AK  G N    F        +    +  D
Sbjct: 519 GLSIGVATYSREHKSNFGIELYKEADMALFTAKKMGKNDFVIFEEHMASELKAQVSMTSD 578

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ N E +LVY P + L +  I G E L++W+HP  G +S +EF+ +AE   +I  +
Sbjct: 579 LRKALINREFHLVYQPQVNLYNHRIFGAEVLLRWNHPVRGPVSPAEFIPVAEAHGLIDQL 638

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L    + I  W+ Q     + + +N++ +     +    +  ++ +       ++L
Sbjct: 639 GEYVLRCAIKQIADWKRQYGR-AVRLAVNVSPRQFGRFDFVSQVGLMLEEFQVDGRLLEL 697

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +  + E +   L  LR +G+ + +DDFGT  S L+ L   P D +K + S +  
Sbjct: 698 EITESALAKDIETAVSKLMELRCLGVGVAVDDFGTGFSNLASLKRYPVDLLKIDRSFIRD 757

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +  +AI+ +I+ MAK +   I+A+ +     I+ + + GCD IQ  +VA P+  + 
Sbjct: 758 IPHDQDNLAIVIAIVQMAKTLGLKILAEGVETIDQIRVMRQQGCDLIQGFYVARPMLVDQ 817

Query: 949 ILK 951
             K
Sbjct: 818 FEK 820


>gi|192361381|ref|YP_001983020.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190687546|gb|ACE85224.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 587

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 221/442 (50%), Gaps = 6/442 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +   S + +   A  D+LTG+ NR  F + L   +  +    + +  ++ +D+D +K IN
Sbjct: 129 QLYDSHQRLRSLAENDSLTGLANRYYFDESLRAAIARAKRQHD-QLALLFLDLDNFKLIN 187

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD+VL  + +R+  +++  D++ RL G+ F I+    +    I+  A  +   
Sbjct: 188 DSLGHVVGDEVLKEVAQRLLNVVRAGDVVCRLGGDEFAILAHHFDTEESISQLAQRILDD 247

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI +   E  ++ SIG A++  +  ++S++LK A++AMY AK  G N+ + F  +  
Sbjct: 248 LRSPIVIGNTEHCISTSIGIATYPDAGNSASDLLKAADMAMYRAKQDGRNNFQFFSPAMQ 307

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +  I  +++L   +      L Y PI+      I G E LI+WDHP+ G +  SEF+
Sbjct: 308 AQMQERIRTEKELRALIPTDHFILFYQPIVDAQTCTICGAEGLIRWDHPERGILPPSEFI 367

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL-INIASKDLLDNELCEGMQAL 817
            +AEE+ +I  I+     +  + +  WR Q  +   F++  N+ ++ L D++L +G+   
Sbjct: 368 TLAEEIGLIGEIDSRSRLKACQQLAGWRQQGLVADDFVMKFNVCAQLLTDDDLYQGILDD 427

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +       + + L  +ES+++ N ER+   L ++   GI + +DDFGT  S ++YL  +P
Sbjct: 428 LHTCELPGNCVSLEITESILISNLERTARKLQQMLDYGIDIAVDDFGTGYSSIAYLKELP 487

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             T+K +   + G         ILR++I  AK+++ T++ + +      +     G DY+
Sbjct: 488 ARTLKIDRKFVQGVPENPADCRILRAMIVFAKSLDLTVVIEGVETREQARICRDYGADYL 547

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q    + PL        L    
Sbjct: 548 QGYLFSKPLSPRDFEHFLHNHN 569


>gi|114331414|ref|YP_747636.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas eutropha C91]
 gi|114308428|gb|ABI59671.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas eutropha C91]
          Length = 984

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 132/666 (19%), Positives = 244/666 (36%), Gaps = 24/666 (3%)

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK- 360
              +  +    + +  I + ++  I++  +      +  I + + +              
Sbjct: 319 VQAIQNSIWRIVVIGLIGMIFSEIILFSMISRPLSRLKYIVSLLPLLAGRGFGSFRSALS 378

Query: 361 -----RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVLG 413
                R  ND I       L L   L                Q   +  + +     +  
Sbjct: 379 SHWRRRRLNDEIDLLHDASLTLSHKLEKLEEKVAYRTRMLVQQRDELSKEKDFIENLLDT 438

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI-LDSFV 472
           +  +V   D     + T      +   +   + G   +++  +  +       + L    
Sbjct: 439 AQVVVLTQDASGKIIMTNTYGEILTRYSEEELQGK--HFMELLAPDGEQYNLDVYLLEIR 496

Query: 473 GYRRGRLQYEFRVRAADNQFH---WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
              R +L++E  V   D+      W+  R+   S  +  ++  +G+  DITE K+    +
Sbjct: 497 KGNRDQLRHEAIVLCKDDSKRNVAWLHSRLTWQSKDDPSVILSVGL--DITEYKRVEGHL 554

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT + NR+ F + L  IL  +    +    ++  D+D++K +ND  G   GD
Sbjct: 555 AWLADHDPLTNLYNRRRFSEELEQILSWAERYQHP-GALLFFDLDRFKFVNDTSGHQAGD 613

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  +   +   ++  DI ARL G+ F +IL        I      + +     ++L  
Sbjct: 614 AMLKMVADMLSRTVRTADIAARLGGDEFAVILPEIMPGAAIEVAKKILARLGETQLSLNG 673

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--- 706
           R   ++ASIG A +        ++L  A+LAMY AK  G      F       +RV    
Sbjct: 674 RTHNISASIGIAIFPEHGNNVHDLLAAADLAMYQAKETGRGTWHLFSSDDQSRERVRTLV 733

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             KE +  A  +    L   PI  L D      E L++             F+  AE   
Sbjct: 734 YWKEKIEYANAHDRYLLYLQPIQTLRDGMTHHYEVLLRMQDEDGTIHPPGAFIRAAEHTG 793

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I+  +L +            N    F  IN+++    D EL   +   +S     P
Sbjct: 794 LIHKIDHLVLHKAIALAARINRAENRRIGF-SINLSAHAFNDPELLPTISQALSVNQIDP 852

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +    +E+  + N   +R LL  L+++G    LDDFG   S   YL  +P D VK +G
Sbjct: 853 GLLMFEITETAALDNLPGTRGLLYDLKQLGCGFVLDDFGVGFSSFYYLRELPVDAVKIDG 912

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           ++ ++  +AK     I A+ +  +  +  L ++  D+ Q  ++  P
Sbjct: 913 SFIRNLASNPDDQILVSALCSVAKGFGKKITAEFVENKEILSILDKLEVDFAQGYYIGMP 972

Query: 944 LGFNSI 949
                +
Sbjct: 973 TLAEKL 978


>gi|34499834|ref|NP_904049.1| hypothetical protein CV_4379 [Chromobacterium violaceum ATCC 12472]
 gi|34105684|gb|AAQ62038.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 946

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 205/434 (47%), Gaps = 8/434 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E       +  ++  D LT +PNR  F   L    D +  D   R  V+ ID+D++K +
Sbjct: 495 SELDAVNAQLEFDSLHDPLTKLPNRNYFSKALRRAWD-AYLDGGDRFAVVFIDLDRFKLV 553

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L     RI   L+  D LARL G+ F +++   +   +    A  +  
Sbjct: 554 NDTLGHLAGDHLLFEAGARIRSCLRHYDFLARLGGDEFAVLMFGMDAVDECEVIARRIVS 613

Query: 640 SIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P+ L  RE+  TAS+G           + ++L++A+ AMY  K +G      F   
Sbjct: 614 EFERPVVLAGREVFSTASVGVVLADSEHYHKADDLLRDADHAMYCTKQQGRQGYTLFSHQ 673

Query: 699 SFRSD--RVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  ++ ++ +L  A  E  +L   Y P I      + G E L++W HP+ G +S  
Sbjct: 674 LRIDQADQLALETELRRALEEEGQLVPYYQPFIAAATGALAGFETLVRWQHPQRGLVSPG 733

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGM 814
            F+ +AEE  +I  ++ +M+      + +WR +      I + IN++S +  D +L   +
Sbjct: 734 VFLPVAEESGLITRLDRYMINAACAQLQAWRAEGRVGEGIALHINLSSANFRDPDLVGWI 793

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              I+     P+ + L  +ES ++  PE +   +  L  +G+ L LDDFGT  S LSYL 
Sbjct: 794 GERIAHYRLPPAMLHLEITESALIDQPEAAATAMQALHGLGVRLALDDFGTGYSALSYLH 853

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              FD +K + S +      ++ +AI+R+I+ +A+ ++  ++A+ +        L  MGC
Sbjct: 854 RYRFDVLKIDQSFVFDLDRKQESVAIVRAILALARALDLEVVAEGVETASQSAMLKEMGC 913

Query: 933 DYIQDSHVASPLGF 946
             +Q  H A+P   
Sbjct: 914 GMLQGFHFAAPAPA 927


>gi|330826986|ref|YP_004390289.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|329312358|gb|AEB86773.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Alicycliphilus denitrificans K601]
          Length = 858

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 213/438 (48%), Gaps = 9/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++    I   A+ D LTG+ NR     +    L  +         ++ ID+D++K++N
Sbjct: 419 ERERERAHIHQLAYYDALTGLANRSMLRTQAERRLHEARRS-GAPLALLFIDLDRFKQVN 477

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L ++  R+ +  +  D+ AR+ G+ F ++L     + + A  A  +  +
Sbjct: 478 DTQGHPAGDALLSAVATRLQDSARAGDVAARMGGDEFVLVLPQCG-ASQAAAVAERLLAA 536

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           +A P+      +  +AS+G A +      +  +L+ A++AMY AK  GG     +   ++
Sbjct: 537 VAQPVEAEGAVLYPSASLGIAMYPEDGTDADSLLRCADMAMYQAKSAGGQCYHFYSAEMN 596

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R  ++ DL   + +  L L Y P +    + + G+EAL++W HP+ G I     +
Sbjct: 597 DQAQERSRLESDLRATLRSGGLALHYQPQM--HGQALHGVEALLRWTHPQHGPIPPPRVV 654

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             A E  ++ A+  ++L+   R +  WR +    P  + +N+ +   LD  L + +   +
Sbjct: 655 ETAGECGLLDALTKWVLQEACRQMADWRRRGVAVP-RVSVNLDADSFLDPALPDLLAGTL 713

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P+ + +  +E+V++ +          +R+ GI+L+LDDFGT  S LS L  +P 
Sbjct: 714 TAHGLQPADLTVEITEAVMLTSDPAVLATARAVRERGIALSLDDFGTGYSSLSALHRLPI 773

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          ++  +++ +A+ ++ +++A+ +      + LT  GC  +Q
Sbjct: 774 GEIKLDASFVQDIETSATVRSLASAVLHIARGLDLSVVAEGVETPAQRQFLTEQGCAVLQ 833

Query: 937 DSHVASPLGFNSILKLLK 954
              ++ P+  +++  LL+
Sbjct: 834 GYLLSRPMPADALESLLQ 851



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 2/136 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      +       + SL    SG  +   D  R           +LG A     G   
Sbjct: 129 LKDVTAQRAQQQHLRQLSLVADRSGSGMVVADADRRITYVNAGFTRLLGFAGAHALGRRL 188

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L      D      +           +Q +  +  +D +  W  + + P+  + G++ 
Sbjct: 189 PELARGPHTDVGAIDAL--RACAEAGQEMQTQLLLYTSDGRPLWASVMMNPVRGAAGELE 246

Query: 511 RYIGIANDITEQKKSL 526
             + +  DIT  K   
Sbjct: 247 HIVFVLTDITHTKMHE 262



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 7/134 (5%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +     +  + D V   D     V       T+ G     + G     L  +    R+ 
Sbjct: 18  EQLLVQTLEQAVDAVVVIDEHNRVVLFNAAAETLWGWPRAEVLGRNVGML--VPPGIREA 75

Query: 464 FRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +++       R+    R   V   +    W  + I  +    G  + Y     D+T
Sbjct: 76  HDGYVNTNRITGINRIVGTSRDVPVERRNGTRLWASMSISRVVI--GTRVLYTAFLKDVT 133

Query: 521 EQKKSLEGILCNAF 534
            Q+   + +   + 
Sbjct: 134 AQRAQQQHLRQLSL 147


>gi|291526122|emb|CBK91709.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
          Length = 860

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 251/575 (43%), Gaps = 34/575 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASG 443
            VIQ +L     +  +          +  SG  ++  D+   + +        +L     
Sbjct: 309 RVIQSILTKKITTNSLAGSYASLEAILENSGCGIYVADMSKSEILYMNNYCKQLL----- 363

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                       I  N  + +         +      +       ++++  +      ++
Sbjct: 364 ---------SNIIEQNKLEKY------IFSHTAESRSFTEVYVTEEDKWFDIHRTG--IA 406

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  ++ +    DIT++K+  + I   A  D LTG+ NR      L   +D S  +D 
Sbjct: 407 WVDGRKVQLV-TLYDITQKKRYQQRIENQANNDFLTGLYNRMRCEQDLAKFIDDSVKND- 464

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  ++ ID+D +K IND LG   GD +L +++  + ++    +   R+ G+ F +I+  
Sbjct: 465 TRGAMIYIDLDDFKHINDGLGHQYGDVLLKAISNSLTQVKGIENHCYRMGGDEFIVIVTG 524

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++  ++      +++    P  L   +   T S G A + +   T  ++++ A++A+++
Sbjct: 525 -SSVDRLESIINDIQQIFVRPWFLKGEDYYCTISAGVAFFPTDASTVEDVIRRADIALFN 583

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEI-VGL 738
           AK  G N +E +   +    + R+ +++ +  A  N   E  + + PII +  E++  G 
Sbjct: 584 AKKEGKNRIEFYNEGIDGTSTKRLDLEKYMRKATMNECDEFTVYFQPIINVKGEDVCAGA 643

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+    G I+  +F+ +AE L +I  I   +L   A+    W D    P   + +
Sbjct: 644 EALVRWNSATMGFINPVDFIPLAEYLGLINPIGEHVLREAAKHCRYWNDM-GHPDYKVNV 702

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   LL N++ + ++ +I +    P  + L  +ES+ + +  R + +L  ++ +G+ +
Sbjct: 703 NLSVVQLLQNDIVKKIKGIIDEVGIEPGNLCLEVTESLAINDMVRMKRILSEIKALGVKV 762

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++  +P D +K +   +    E     A ++ +  +A  I   +  +
Sbjct: 763 ALDDFGTGYSSLNHIREMPLDIIKIDKCFIEHLGEDDFSDAFVKMVTELANTIGVHVCVE 822

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +     + +MG  YIQ      P+   S  +
Sbjct: 823 GVETDRQYAIIKKMGIYYIQGYFFDKPMCIESFEE 857


>gi|114320775|ref|YP_742458.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227169|gb|ABI56968.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 824

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/575 (23%), Positives = 245/575 (42%), Gaps = 30/575 (5%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +       Q       R +     + + V   +   + +   P    +L          
Sbjct: 273 RLQQEAKERQAAEQQARRLARFPDENSNPVLRVNPDGEILYANPAAIPLL---------- 322

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R+W       D           +       +  +   A      W ++ I P+    G 
Sbjct: 323 -RHW------EDEQRLPADWQPRLTAATTAGRVTYEEVAVQG--RWYLMAINPIP-EEGY 372

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  Y     DIT++K+    +     +D LTG+PNRQ F DR+   L   A+D   R  V
Sbjct: 373 LNLY---GVDITDRKRFEAELAKRNTEDALTGLPNRQVFRDRVGQALRERASDRG-RAAV 428

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++I I+    IN + G   GD VL +L RR+ + +     LARL    F +++    +  
Sbjct: 429 LLIRIENMDLINGLGGHQAGDLVLTALARRLRQAVAPDQTLARLGEEVFALLIPKVASVD 488

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++A  +  +   +   +     E    AS G+A +      ++ +L+NA+LA + A  +G
Sbjct: 489 ELARLSEQLLGVLNSSVTSQGHEFASRASGGWAIYPHDGADTATLLRNAQLAAHRASRQG 548

Query: 689 GNHVESFRV---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                 F V   +     R     +L  A+++  L L + P +      + GLEAL++W 
Sbjct: 549 ERQRYLFFVEGLNEAVESRQRRLRELRNAIDDGGLTLWFQPQLSSDRRRLSGLEALVRWP 608

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G ++   F+ +AEE  +I  +  ++L+   R +  W+      P  + +N+ ++ L
Sbjct: 609 HPSDGLLAPDAFIPLAEEHDLIIPLGEWVLKAACRQLHEWQQLGLPVP-RLAVNLGARHL 667

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           LD+ L   +  L+         +++  +ES VM +  RS  +L RL ++G+ + +DDFGT
Sbjct: 668 LDSRLPGFVADLLRDYELPGHCLEVEVTESTVMEDITRSEEVLSRLVRLGVQVAVDDFGT 727

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P   +K + S + G     +  AI R+I  ++ ++   ++A+ +     
Sbjct: 728 GHSSLAYLKRLPIQRIKIDRSFIAGLPDDAQDRAICRTIADLSHSLGLQVVAEGVETTAQ 787

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
              L +MGC+ +Q   +A P     I   L+   P
Sbjct: 788 AAALQQMGCNDLQGFLLARPGPITRITHWLRHEAP 822


>gi|329848652|ref|ZP_08263680.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328843715|gb|EGF93284.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 726

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/515 (24%), Positives = 236/515 (45%), Gaps = 24/515 (4%)

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDIL 510
           +  +H  +          FV    G    E  V   D   +  ++      +  S G  L
Sbjct: 206 ITLMHPGEAKPQGAASVPFVDETTGETIAEL-VWRPDTPGRTLFVRTLGPVLMISLG--L 262

Query: 511 RYIGIANDITEQKKSL------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             I I      QK +             A  DNLTG+PNR  F DRL    +        
Sbjct: 263 GLIAIVLLHQSQKAAQGLIASEAKAKHMALHDNLTGLPNRTLFADRLNQACERLNRQGG- 321

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  VM I +D++K +ND LG   GD+++     +I  +++  D LARL G+ F  I+ ++
Sbjct: 322 QVAVMCIGLDRFKDVNDTLGHLAGDELIRHNAAKISGIIRSGDTLARLGGDEFV-IIQTD 380

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            + L  A  A  + + +   +NL   ++  + SIG       +I  +E L+ A+LA+Y A
Sbjct: 381 TDGLSAAALAKRVLEVLTGTVNLESGQVFSSCSIGVTLIHEGEIEPAEALRQADLALYRA 440

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F +    + ++   ++  L  A+   ++ +VY P +      IVG+EAL 
Sbjct: 441 KDLGRGQYAFFELEMDATIKLRKMLETGLREAIHVEDIDVVYQPQVDH-FGNIVGVEALC 499

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W H   G +S + F+ +AEE  ++  +   ++ R  +D   W      P + + +N+++
Sbjct: 500 RWTHATRGPVSPAYFIPLAEECGLMHDLGSLVMRRAMQDSHRW------PGLKVAVNVSA 553

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L        M+ ++++T  +  +I++  +E V++ +   ++ +L  LR +G S+ LDD
Sbjct: 554 TQLRHACFVGHMRDMLAQTGTAAIQIEIEITEGVLLNDDNTTQTVLSDLRHMGFSIALDD 613

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L YL   P D +K + S ++      +  A++R+I+ ++K +   I+A+ +  
Sbjct: 614 FGTGYSSLGYLSRYPVDKIKIDRSFVSNLGVDPEAEAVIRAIVKLSKALNLNIVAEGVET 673

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 L + GC  IQ    + P+    I ++++ 
Sbjct: 674 RAQKNILRQSGCQIIQGYLFSRPVPREEIDEMMRA 708


>gi|255305761|ref|ZP_05349933.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 556

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 108/552 (19%), Positives = 225/552 (40%), Gaps = 22/552 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D ++ WDI  ++   +  I     L+       +  W   ++ +D   ++ 
Sbjct: 17  FELLSQSTEDYIFFWDINMNKFKISSAIFDEFNLSKEIESDLVNCWSKIVYPDDVQIWKD 76

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +  ++G    E+R+     +  W+  R +   + +   +  +G   +I E+ K  
Sbjct: 77  DIQELLHGKKGEHNLEYRLINKYEEIVWISCRGKVYVSDDPKTIFLVGRIKNIGEKNK-- 134

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D++TG  NR+ F  R+  ++      +     + ++DID +K IN+  G +
Sbjct: 135 --------FDSITGTWNREQFEHRMNYLIKEKIYKNG---AMFIMDIDNFKNINEKYGHS 183

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL ++   + E L     L RL G+ F            I      ++        
Sbjct: 184 YGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCT-KETIEKIYEKIQMYTNTQHE 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--R 704
           +   +   T + G A +        ++ K+A++A+  AK  G N ++ F    + +    
Sbjct: 243 IESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKLKV 302

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +++ L   VEN+  +  L + P +  + +E++G E L++W    +G +S  EF+ I E
Sbjct: 303 ISMQQKLRECVENNFNDFELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPILE 362

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  ++++   +    W      P   I +N++   L ++   + +   + +  
Sbjct: 363 QSNLIIPVGKWIIKEAVKQCKEWHK--INPDFKISVNVSYIQLKEDFFRDFIVECLVEYQ 420

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +E+  + +          L+ IG+ + +DDFGT  S L+YL  +  + +K
Sbjct: 421 LRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK 480

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
              S +   T        L  II +A  I   +  + I    +   +  +G D IQ    
Sbjct: 481 IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLF 540

Query: 941 ASPLGFNSILKL 952
             P+  +   K 
Sbjct: 541 GRPVSASEFYKF 552


>gi|326625137|gb|EGE31482.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 655

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 208 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKTVNDAY 266

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 267 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 325

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 326 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 385

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 386 QTQLQLMNDLWLALERQELRLVYQPKFQASAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 445

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 446 EKTGLIVTIGSWVIDEACRQLREWHLQGYDL-WSVAVNLSALQFEQPGLVDTITRSLARH 504

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 505 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 564

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 565 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 624

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 625 LGKPRTAEEIARDIRDPANIFTRS 648


>gi|114705392|ref|ZP_01438300.1| diguanylate cyclase/phosphodiesterase [Fulvimarina pelagi HTCC2506]
 gi|114540177|gb|EAU43297.1| diguanylate cyclase/phosphodiesterase [Fulvimarina pelagi HTCC2506]
          Length = 489

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/427 (26%), Positives = 202/427 (47%), Gaps = 9/427 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++      +A  D LTG+PNR++F   +      S +    +  +++ DID +K +ND  
Sbjct: 36  ETRRKARKSALTDELTGLPNRRAFSGHIEQYFRDSGSKAETKVAMLLFDIDNFKLVNDEH 95

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L + + RI E +    + ARL G+ F I +  E    +  + A  +      
Sbjct: 96  GHEGGDQLLRAFSERILEAVGPECLFARLGGDEFAIAMFGEEAEERSREMASRLSVLSKK 155

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P     R +  T+SIG  +   +      +++ A++A+Y+AK    +    +  S     
Sbjct: 156 PYECAGRTLVATSSIGGVACGGNLADVPAIMRRADIALYNAKENKRSAACFYDESMELVV 215

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + R  +  DL  AVE  EL L + PI+ L D ++V  EAL++W HP  G +S  EF+ IA
Sbjct: 216 TKRAALMRDLRHAVEKGELVLHFQPIVDLADSKLVSFEALLRWRHPSRGFVSPGEFIPIA 275

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I L+++E       +W +      I   IN++ +   D  L   +   + K 
Sbjct: 276 EESGLILPIGLWVIEEACSVAATWPEH-----IRFAINLSPRQFSDERLIPTVLGALEKN 330

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+R+ +  +E+ ++ +  ++   L +LR  G+ + LDDFGT  + LSYL   PFD V
Sbjct: 331 GVGPARLTVELTETAIIEHDGKALAALRKLRSEGVKIALDDFGTGFASLSYLTKFPFDVV 390

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +  ++    A  ++ SI  +A  +    +A+ I     ++ + + GC+  Q   
Sbjct: 391 KIDQSFVREASRNNNADVVISSICDLAARLGLDTVAEGIESLDHLELVRKAGCNRGQGYL 450

Query: 940 VASPLGF 946
              P   
Sbjct: 451 FGRPEPA 457


>gi|87120843|ref|ZP_01076736.1| hypothetical protein MED121_18920 [Marinomonas sp. MED121]
 gi|86164071|gb|EAQ65343.1| hypothetical protein MED121_18920 [Marinomonas sp. MED121]
          Length = 821

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 107/443 (24%), Positives = 218/443 (49%), Gaps = 12/443 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D+ E+KK+ +     A  D LTG+ NR     +L   +  +  + N    ++ +DID++
Sbjct: 377 SDLNEEKKNFD---FLAHHDPLTGLANRLLGTKKLNAKIKKA-EEQNTCFLLIYLDIDEF 432

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD++L+++ R + EL +    ++R+ G+ F I++    +       +  
Sbjct: 433 KTINDSLGHTSGDNLLINVARILEELAQNIGFVSRMGGDEFMIVVDDVESIKHGELISER 492

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + KS+     + ++ + V+ASIG   +         +++NA+ AMYHAK  G +    + 
Sbjct: 493 INKSLRKAYYIDDKSVFVSASIGVCQFPDHGHDEETLIRNADTAMYHAKRNGKDQYRIYV 552

Query: 697 VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    +I+ +  L  A++N EL + + P + L  + + G EAL++W HPK G +  
Sbjct: 553 DKMTLEVTDIIETNVGLRQAIKNDELVVFFQPKVDLNSKHVTGAEALVRWQHPKLGLLQP 612

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEG 813
            +F+ IAE+  +I  I+ ++  ++A  I  W+ +      I   +N +++     +L + 
Sbjct: 613 VDFLEIAEKTDLIVDIDKWVFRKVASLISQWQAEGVNLDGIHFSVNFSARMFYMPDLADQ 672

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +T   P ++ L  +E  +M +       +  LR  G  + +DDFGT  S LS +
Sbjct: 673 LKNILDQTNCQPHQLILEITERDMMRDFVTCVHNIEILRAQGYKIAIDDFGTGYSSLSVV 732

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K + S +           I  +++ +A+ +  ++IA+ +  +  + +L ++G
Sbjct: 733 KNLSADYLKLDRSFIQDLDTSQLDYEITNAVLKLARILNLSVIAEGVETQQHLDKLIQLG 792

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C   Q  + + PL    +   L+
Sbjct: 793 CKRAQGYYFSKPLP---VTNWLE 812


>gi|289208211|ref|YP_003460277.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943842|gb|ADC71541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 805

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/607 (20%), Positives = 244/607 (40%), Gaps = 16/607 (2%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
                +     +     ++   L G  +LI +LI   V++H   T      +  + ER  
Sbjct: 190 AGLTAVRDTARQYRTAVVLMLVLGGAALLIGVLITLGVLRH---TRRIESALHEEKERAQ 246

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTI 467
           + +   GD V   D+        P    + G    S +     +    I  +  +     
Sbjct: 247 VTLHAIGDGVITTDLEGRVDYLNPVAEHLTGWDQASAYNQPLASVFHIIRESTGERLNHP 306

Query: 468 L-DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           L +         L  E  + +A+ + H +     P+ + +G I+    +  D+++ ++  
Sbjct: 307 LTERMPDGTACTLDQEAILISAEGREHAIEEVSAPIRDRDGTIIGAALVFRDVSKAREMA 366

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A  D LT + NR  F  RL+ ++  +  ++     ++ +D+D++K +ND  G  
Sbjct: 367 RELSWAATHDCLTSLANRAEFERRLSQLVATAQQENREH-ALLYMDLDQFKLVNDTCGHG 425

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GDD+L  LT ++   L+  D LARL G+ FG++L +                       
Sbjct: 426 AGDDLLCQLTSQLHSQLRESDTLARLGGDEFGVLLSNCPLVQAERIAETLRTTVDNYRFE 485

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              R   V  SIG          + + +  A+ A Y AK +G N +   R          
Sbjct: 486 WQGRIFRVGISIGVVPVFGHLKDTVQYMSEADAACYLAKEQGRNRIHVSRAGDAELSHCQ 545

Query: 707 IK----EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +    + +  A++++  +L    I+ +  +E    E L++        +  + F+  AE
Sbjct: 546 GEMNCVQRITHALQHNRFWLHGQRIVPVSGDEPTHTEVLLRMVEEDGTVVLPATFIPAAE 605

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               + AI+ ++++R+ + + +  D          +N++ + L D  + + +   +  + 
Sbjct: 606 RYGQMPAIDRWVIKRVLQHVATDTDTEGH----FAVNLSGQSLCDRGMLDYIVHQLQNSG 661

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PSRI    +E+  + N  ++   +  LR +G   +LDDFGT  +   YL  +  D +K
Sbjct: 662 VEPSRICFEITETAAIANLSQASRFIRELRGMGCHFSLDDFGTGMASFGYLKTLKVDYLK 721

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +    E R   A++ SI  + + I    +A+ +  E  +  L  +G DY Q   +
Sbjct: 722 IDGSFVRDMAEDRVSRAMVESIHHIGRVIGVKTVAECVSHERLMDALRLVGVDYAQGFGL 781

Query: 941 ASPLGFN 947
             P    
Sbjct: 782 HVPEPLE 788


>gi|134099389|ref|YP_001105050.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006223|ref|ZP_06564196.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912012|emb|CAM02125.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 817

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/575 (23%), Positives = 255/575 (44%), Gaps = 15/575 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +          S   R       +   V  +D     V   P +  +LG +   + G  
Sbjct: 250 TVQDVTEEHAAQSRLRRFIDLCELAPVGVGLFDQEERLVHANPALCRLLGHSPEQLRGMT 309

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              +        +  R  L                +R  D    +  +        +G  
Sbjct: 310 TEAIS----EPGEQNRWSLPDAARGSGTAPAPRRWLRRRDGDSVYCELHSTESVQDDG-T 364

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++ +  D+TE  ++ E +   A  D LTG+PN  +    L  +L  +  D   R  V 
Sbjct: 365 RFWLVVFQDVTEPFRTAEILRHQATHDELTGLPNHTAVKAALGDLLASAGAD---RVAVF 421

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           + DID +K+IN+ LG   GD++LV+L RR+   L      ARLSG+ F ++    + +  
Sbjct: 422 LCDIDNFKRINNSLGHDAGDELLVALARRLESRLPRECTPARLSGDDFLVVCSDIDAAGG 481

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG- 688
           +   A  M   ++  + +  + I V+ SIG A       T  ++L+ A+ A+  AK +G 
Sbjct: 482 VESLARTMSGLLSTAVPVHGQLIKVSVSIGAAMRHDPLTTGGDLLRFADAALSEAKRQGS 541

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
               +    +    + +V ++ +L  A+++ EL + Y P++   D  IV +E+L++W HP
Sbjct: 542 GRLSLAGPALRDAANQQVHLEGELRKALQDGELEMHYQPVVS-DDGTIVTVESLLRWPHP 600

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    FM IAE+  M++ ++L++L    R+   W       P+ I +N+++    D
Sbjct: 601 ERGMLRPGAFMPIAEQGGMLRDLDLWVLRTCLREAADWPLARGA-PVRIAVNLSALVPGD 659

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               + ++  I+ +  +PSR+ L   E+ ++  P+RSR  +  L + G+  ++DDFGT  
Sbjct: 660 PGFVDTVREAITDSGIAPSRVILELVETALVDLPDRSRQAMDELTRYGVRFSVDDFGTGY 719

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L  +P  T+K +   ++G  +    +A+ +++  +A  +    +A+ +       
Sbjct: 720 SSLARLKDLPAHTIKLDRRFVSGVVTDPADLAVAKAVADIAHAMRRRCVAEGVETATQFH 779

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
            L  +G +  Q    + PL    +L LL++   P+
Sbjct: 780 VLRGIGVNGYQGWLFSYPLPARELLPLLRKGHLPV 814



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 3/147 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V         +  + +R   A   +    W+WD    R   +  +  + G    
Sbjct: 122 LGTVQDVTEQRTLEWKLRDEQQRVVDAQQLARLGTWEWDPGSGRTRFSDLLYELTGRNRA 181

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   +L  +  ++R     I    +   R  +++E R    D       +      
Sbjct: 182 E-TTTYHGYLERVPADERRRVHRIWQG-LRRDRQPVEFEHRYVRLDGSVRVWRMHGAERH 239

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
           +  G   R +G   D+TE+  +   + 
Sbjct: 240 DIAGRP-RLLGTVQDVTEEHAAQSRLR 265



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 14/154 (9%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L    ++ H     +  +      ER       +    + +D+ R     +P +     
Sbjct: 1   MLSHTGMLSHADKLAWLVEA-----ERM------ARMGSFAFDVARGVGYGSPLLMEWFA 49

Query: 440 LASGSMH-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                +    +   L  +H +DR          V    G  +   ++R    +  ++   
Sbjct: 50  QGQDEIVVDDLHQLLNALHPDDRAAAEKCYTEVVADPGGLTRS-VQIRDQSGEHIYL-CN 107

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +R     +G + R +G   D+TEQ+     +   
Sbjct: 108 VRAEHGPDGRLARLLGTVQDVTEQRTLEWKLRDE 141


>gi|319764770|ref|YP_004128707.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119331|gb|ADV01820.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 858

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 213/438 (48%), Gaps = 9/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++    I   A+ D LTG+ NR     +    L  +         ++ ID+D++K++N
Sbjct: 419 ERERERAHIHQLAYYDALTGLANRSMLRTQAERRLHEARRS-GAPLALLFIDLDRFKQVN 477

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L ++  R+ +  +  D+ AR+ G+ F ++L     + + A  A  +  +
Sbjct: 478 DTQGHPAGDALLSAVATRLQDSARAGDVAARMGGDEFVLVLPQCG-ASQAAAVAERLLAA 536

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           +A P+      +  +AS+G A +      +  +L+ A++AMY AK  GG     +   ++
Sbjct: 537 VAQPVEAEGAVLYPSASLGIAMYPEDGTDADSLLRCADMAMYQAKSAGGQCYHFYSAEMN 596

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R  ++ DL   + +  L L Y P +    + + G+EAL++W HP+ G I     +
Sbjct: 597 DQAQERSRLESDLRATLRSGGLALHYQPQM--HGQALHGVEALLRWTHPQHGPIPPPRVV 654

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             A E  ++ A+  ++L+   R +  WR +    P  + +N+ +   LD  L + +   +
Sbjct: 655 ETAGECGLLDALTQWVLQEACRQMADWRRRGVAVP-RVSVNLDADSFLDPALPDLLAGTL 713

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P+ + +  +E+V++ +          +R+ GI+L+LDDFGT  S LS L  +P 
Sbjct: 714 TAHGLQPADLTVEITEAVMLTSDPAVLATARAVRERGIALSLDDFGTGYSSLSALHRLPI 773

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          ++  +++ +A+ ++ +++A+ +      + LT  GC  +Q
Sbjct: 774 GEIKLDASFVQDIETSATVRSLASAVLHIARGLDLSVVAEGVETPAQRQFLTEQGCAVLQ 833

Query: 937 DSHVASPLGFNSILKLLK 954
              ++ P+  +++  LL+
Sbjct: 834 GYLLSRPMPADALESLLQ 851



 Score = 66.1 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 2/136 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           L      +       + SL    SG  +   D  R           +LG A     G   
Sbjct: 129 LKDVTAQRAQQQHLRQLSLVADRSGSGMVVADADRRITYVNAGFTRLLGFAGAHALGRRL 188

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L      D      +           +Q +  +  +D +  W  + + P+  + G++ 
Sbjct: 189 PELARGPHTDVGAIDAL--RACAEAGQEMQTQLLLYTSDGRPLWASVMMNPVRGAAGELE 246

Query: 511 RYIGIANDITEQKKSL 526
             + +  DIT  K   
Sbjct: 247 HIVFVLTDITHTKMHE 262



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 7/134 (5%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +     +  + D V   D     V       T+ G     + G     L  +    R+ 
Sbjct: 18  EQLLVQTLEQAVDAVVVIDEHNRVVLFNAAAETLWGWPRAEVLGRNVGML--VPPGIREA 75

Query: 464 FRTILDSFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +++       R+    R   V   +    W  + I  +    G  + Y     D+T
Sbjct: 76  HDGYVNTNRITGINRIVGTSRDVPVERRNGTRLWASMSISRVVI--GTRVLYTAFLKDVT 133

Query: 521 EQKKSLEGILCNAF 534
            Q+   + +   + 
Sbjct: 134 AQRAQQQHLRQLSL 147


>gi|152965973|ref|YP_001361757.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360490|gb|ABS03493.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 491

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 207/472 (43%), Gaps = 19/472 (4%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G   + + +  D+T +K +   +   A  D LTG+PNR    DRL   L  +      
Sbjct: 9   AAGSGPQLLCLIEDVTARKAAELALRHQALHDGLTGLPNRTLLHDRLEHALAAAGRS-GA 67

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V+  D+D +K +ND  G A GD++L  +  R G  L+  D LARL G+ F ++    
Sbjct: 68  GVGVLFCDLDGFKAVNDSAGHAAGDELLREVAARFGGCLRPGDTLARLGGDEFAVVCPDL 127

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK------------ITSSE 672
            +   +   A  +  S+  P+ +      V  S+G      +               + +
Sbjct: 128 ADRQGLQVVAERLLHSLREPVTVRAGTFAVGVSVGTHLVVPTGAPTPSGGDRDVRSCAEQ 187

Query: 673 MLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
            L  A+ AMY AK  G N V     S            I  +L  A+E  EL +   P++
Sbjct: 188 ALARADRAMYEAKRGGKNRVHLDDGSDEHQVRSHRAARILPELRTALERDELVVHGQPVL 247

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L     V +E L++W HP  G +S +EF+ +AE+  ++ A+   +LE   R   SW   
Sbjct: 248 DLATGHPVAVETLVRWQHPTRGLLSPAEFLDVAEDSPLMLALGRRVLEESCRLAASWGAA 307

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  + +N++ + L    L E +   + +      R+ L  +E+ +          L
Sbjct: 308 LGPAAPAVHVNVSGRQLESASLSEDVLGALRRHGLPAHRLVLELTETTMPRITHSLLGDL 367

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
            RLR++G+ + +DD GT  S L+ L  +P D +K + + + G        A++R+++ + 
Sbjct: 368 QRLRELGVRIAIDDLGTGYSSLARLTELPVDLLKIDLTFVAGLGRDPSCDAVVRAVLSIG 427

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             +  +++A+ +      + L R GCD +Q    + P    ++L +L+   P
Sbjct: 428 AALGLSVVAEGVETPQQAESLRRYGCDTVQGYLYSPPRPEAALLDVLRAGLP 479


>gi|124515912|gb|EAY57421.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum rubarum]
          Length = 747

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 130/579 (22%), Positives = 252/579 (43%), Gaps = 14/579 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+ IG  +I  VL      + +          +    + +   D  +  +      + + 
Sbjct: 168 VLGIGAHIIGIVLERSRREELLRLSEN----ILRKIREAILVTDDEKKILFLNEAFSNLT 223

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   + G   +         R      +   +    G  + + R    + + +   +R
Sbjct: 224 GFSESELAGGRVD--NDTLPFFRTPLGDAIWKHLDT-HGFWEGDVRKTRKNEEDYLEWLR 280

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +  + N +     YI I++DIT +K     +   A  D LT +PNR    +R   I+D  
Sbjct: 281 LSAIQNESQKTTHYIAISSDITTRKADESRLDFLAHHDPLTELPNRVLLRERFEQIVDTV 340

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              +     V+V+D+D +  +N  LG   GD +LV ++RR+  L+   +++ R+ G+ F 
Sbjct: 341 -RSEGTSLAVLVMDLDNFHLVNSSLGHVSGDLLLVEVSRRLSHLVGPSNMVGRVGGDMFL 399

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            ++  E   ++  +    +  S   P+ + + EI  + SIG A +  +  T  E+++NA+
Sbjct: 400 ALVEGERGGMEAVEVVERIADSFRAPLVVEQCEIFTSVSIGIAFYPENGKTYEEVVRNAD 459

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AM  AK  G N    F  S     SD + I       +E +E  L Y P + +   ++ 
Sbjct: 460 RAMACAKSEGKNTYRFFLPSMTVDVSDHLRIHNSFRQGLERNEFILHYQPQVGVFSRKVE 519

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++WDHP+ G +    F+ +AE   MI  +  ++L    +    W  Q    P  +
Sbjct: 520 AMEALVRWDHPEMGFLYPKRFVPVAETTGMIIPLGEWVLREACQQASRWNAQGFRVP--V 577

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+   L        +   ++ +  SP  ++L  +E++++   +     + RL++IG+
Sbjct: 578 SVNISGIQLRRKNFEATVLDALAWSGLSPELLELELTETMLLEESDLLLKSIARLKEIGV 637

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S L+YL     D +K +   +        +  I+R I  ++  +  + +
Sbjct: 638 RLAIDDFGTGYSNLAYLKRFNADKIKIDQIFVHAGSQNPDQQGIVRMIAGISHVLGLSAV 697

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +     ++ L  +G D IQ + ++ PL   S  + L
Sbjct: 698 AEGVETSHQMEYLVEIGIDSIQGNFLSKPLDRVSCEEYL 736


>gi|152990175|ref|YP_001355897.1| hypothetical protein NIS_0426 [Nitratiruptor sp. SB155-2]
 gi|151422036|dbj|BAF69540.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 1053

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 120/571 (21%), Positives = 255/571 (44%), Gaps = 17/571 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                  + +  + +  S     + + +   D     +        I G  +  + G   +
Sbjct: 490  ELQQKEKALTQELKLLSHTFN-AHEAITITDASGKILRVNKAFEDITGYKAEEVIGKNPS 548

Query: 452  WL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L   IH  D++ ++ + D+      G  + E   +  D   +  ++ I  + + NG+I 
Sbjct: 549  ILKSGIH--DKEFYQQMWDAIKHQ--GYWKGEIYNKKKDGTIYPEVLSITAIKDENGEIS 604

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             Y+    D++E K++ + I      D LT + NR+  ++ L  ++  +A  +        
Sbjct: 605  NYVAHFFDVSELKEAEDEIKKRIELDLLTEVFNRKKMVEELE-VVRKNAIKEGYCNAFFF 663

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----EN 625
            ID+D +K IND  G  VGD+VL  + + +  ++K  DI+AR++G+ F +IL+      E 
Sbjct: 664  IDLDNFKYINDSYGHFVGDEVLKEVAKNLKAVVKDGDIVARIAGDEFALILVDLAKNKEQ 723

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                    A  +    +    +   ++ +  SIG   + + + +  E++ NA++AMY++K
Sbjct: 724  AVHNATLVAEKLISEYSGQKQIGGYDLDINFSIGIYIFPAGEQSVDEIITNADIAMYNSK 783

Query: 686  HRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G N    +           +++K+ +   ++  E  L Y P +   +E+IVG+E L++
Sbjct: 784  KSGRNRFTFYNEALDLESKRFLVMKKAIERGLKEKEFELYYQPKVDASNEKIVGMEGLLR 843

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W+  ++G +   +F        ++  I  ++L+     +I    ++    + + INI+++
Sbjct: 844  WNSKEYGLLFPDKFFPYTRGNRLLYEITDYVLDEAL-QMIQILRESGYLEVKVSINISAE 902

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              ++ +  E +   I  + Y    +     E  ++ N E ++ L+   RK  + + +DDF
Sbjct: 903  QFINRKYVETLLKKIQNSHY-ADGLIFEIVEDALIQNVEYAKDLIKTFRKYCVEIAIDDF 961

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
            GT  S LSYL  +  D +K + S +      +   ++  II + K     + A+ +    
Sbjct: 962  GTGYSSLSYLRDLDVDEIKIDKSFVLDLFEHQNDKLVEKIIEIGKIFGYKVTAEGVENAQ 1021

Query: 923  DIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             ++ L   GCDY+Q  + +  +   +IL++L
Sbjct: 1022 SMQFLKERGCDYLQGFYFSRAVRKEAILRML 1052


>gi|330937483|gb|EGH41440.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 763

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 230/451 (50%), Gaps = 11/451 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T+  ++   +   A  D LT + NR+ F       L    T       VM +DID +K+
Sbjct: 276 LTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQE-HTYTKGMLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S  +  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIAERIRSATRAQDVVARFGGDEF-CILLSIPDYEEARHLAHRVM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
             +   I L  R + +T SIG A +     T  E+LK+A+LA+Y +K +G N V  F   
Sbjct: 394 HKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFFNPA 453

Query: 698 -SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  S  + ++E+L  A+     L + Y PI+ +    +  LEAL++W+HP  G +  +
Sbjct: 454 LKTKASLELQLEEELRNALREGKGLQVYYQPIVDMRTGHVAKLEALVRWNHPHHGLLVPA 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++ ++L R   D+ +   +     + I +N ++  L  NEL E ++
Sbjct: 514 RFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGLEQ-LIISVNCSALTLGRNELVEEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++    +P +++L  +E+ +MGN   +  +L  +R +G+SL++DDFGT  S L+YL  
Sbjct: 573 RALADADAAPGQLELEVTENALMGNISNTIQMLKHIRSLGVSLSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P DT+K + S +     + + + I+++I+ MA  +   ++ + +  +  ++ L + G D
Sbjct: 633 LPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVTEGVETQDQLEFLRQFGSD 692

Query: 934 YIQDSHVASPLGFNSILKL---LKERFPLVK 961
           Y+Q    + P     IL L   + +R P  +
Sbjct: 693 YVQGYLFSRPQPLERILPLARQMNQREPTTR 723


>gi|323498941|ref|ZP_08103924.1| signal transduction protein [Vibrio sinaloensis DSM 21326]
 gi|323316053|gb|EGA69081.1| signal transduction protein [Vibrio sinaloensis DSM 21326]
          Length = 830

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 215/443 (48%), Gaps = 6/443 (1%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D  + +++ + +   A  D LTG+ NR +  +++   +  S         V+ +D+D +K
Sbjct: 387 DFGQLEQTKDQMQYMALHDPLTGLSNRTALQEQIAAGIAQSKLT-GTSLAVVFLDLDDFK 445

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND+ G AVGD +L  L+R+   LL+  D +AR  G+ F        N     D  +A+
Sbjct: 446 KVNDLYGHAVGDKLLECLSRKFEALLEEHDSVARFGGDEFIFCFPCVENQRHALDKTMAV 505

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESF 695
           ++  A P+ +  + +T   S+G + + S     S ++ NA++ +Y +K    GG      
Sbjct: 506 KQVFADPLIIDGKLLTTDCSMGVSMYPSDSDDPSTLITNADVVLYRSKQHSKGGILFFDS 565

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            ++    D   I++ L  A+  +EL +VY P +       +G+EAL++W+  + G I   
Sbjct: 566 DINQQIKDEYQIEQHLKHALRRNELSVVYQPQVCSELGITIGVEALVRWNAKELGFIPPD 625

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  MI  I LF+ ++   DI+          + + +N++ K LL     + + 
Sbjct: 626 VFIPLAEEGGMIHDIGLFVFKQACEDILRL-SNNGRGALNVSVNVSPKQLLHEGFIDSLM 684

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +  +      RI L  +ES+ + + +R   ++  L+  G  ++LDDFGT  S LS+L  
Sbjct: 685 QITDEVGIETGRIMLEVTESIFIHDMQRVSPIVTALQAKGFGISLDDFGTGYSCLSHLNQ 744

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              D +K + S +       +  A++++I+ + +     ++A+ +  +   K L+  GC 
Sbjct: 745 FSIDELKIDKSFIANIIDNAQSNALVKTILAIGETYNIKVVAEGVETQEQYKMLSSYGCA 804

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            +Q  + A PL +  +   L+ +
Sbjct: 805 CVQGYYFARPLPYEELQGWLRNK 827


>gi|329936846|ref|ZP_08286525.1| membrane-associated phosphodiesterase [Streptomyces
           griseoaurantiacus M045]
 gi|329303771|gb|EGG47655.1| membrane-associated phosphodiesterase [Streptomyces
           griseoaurantiacus M045]
          Length = 807

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 218/426 (51%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R    LD +      R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 367 LRDPLTGLPNRQWLLERTWGALDDAER-IGARSALMLIDLDRFRSVNDTLGHLAGDRLLL 425

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++   +  A  +  +++ P++L    + 
Sbjct: 426 QIAERLRLALPRGAEAARLGGDEFAVLLPVADSTTSASRVARNLVVALSSPLDLDGLTLV 485

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +      +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 486 LEASAGLAVFPDHSTDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 545

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D E+ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 546 RALDAHEVQLHYQPKVRF-DGEVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 604

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     + +WR+Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 605 YVLETALEQVAAWREQGLCVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 662

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 663 TEHVLLEDPQRAADTLAALAGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 722

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  I +A ++   ++A+ +  +   + L  + CD +Q   V++ +  +   
Sbjct: 723 IDNEDAEIVRCTIDLAHSLGLLVVAEGVEDDETWERLRDLRCDAVQGWLVSAAMPPDETT 782

Query: 951 KLLKER 956
             L+ R
Sbjct: 783 AWLRAR 788


>gi|117925767|ref|YP_866384.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117609523|gb|ABK44978.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 447

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 223/439 (50%), Gaps = 8/439 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +        D LT +PNR    DRL + +  +A    L  ++++I++  +K+IND LG
Sbjct: 8   LSDHNQILKQYDTLTALPNRNLCRDRLVSDIA-AAEAAGLEISIILIELTNFKQINDTLG 66

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD VL+ + +R+ +     D +AR+ G+ F ++ I EN ++   DF   + + +++P
Sbjct: 67  FQSGDRVLLEVAKRLADYADKSDTVARMGGSEFALLRIRENAAMHSGDFCNELLELLSIP 126

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH---VESFRVSSFR 701
           I   ++ + +TAS+G + +       + + + A +AM HAK  G  +   + +  + +  
Sbjct: 127 IEYEDQPVHITASVGVSHFPRHAGDMNALFQKAAIAMAHAKQAGERNSSRIYAPEMETQA 186

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R  ++  L   +E  EL L Y P +     E++G+EAL++W+ P+ G IS   F+ +A
Sbjct: 187 QERFALESRLHQVLERKELALHYQPKVDAFSGEVIGMEALLRWNSPELGTISPVRFIPLA 246

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  + L+   +    W DQ +   + + +N++ +  LD  L + ++  ++ +
Sbjct: 247 EETELIVPMGAWALKTACKQAKKWLDQGH--KLTVAVNLSPRQFLDKRLKDTVRQALTDS 304

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +ES  +G+   +  LL  L+ +G++  LDDFGT  S L+YL  +P DT+
Sbjct: 305 QLPPERLELEITESCAVGDVTYTVNLLNDLKSLGVTCALDDFGTGYSSLNYLKLLPLDTL 364

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      +   AI+RS+I MA ++   ++ + +        L    C+ +Q   
Sbjct: 365 KLDRSFVMAIPEDKNDAAIVRSVIQMAHDLGLKVVTEGVETRQQAAFLKYNQCEILQGFL 424

Query: 940 VASPLGFNSILKLLKERFP 958
           ++ PL      + L    P
Sbjct: 425 ISRPLDAQEFGEFLLRGTP 443


>gi|205354289|ref|YP_002228090.1| hypothetical protein SG3279 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858636|ref|YP_002245287.1| hypothetical protein SEN3222 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274070|emb|CAR39076.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710439|emb|CAR34797.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326629412|gb|EGE35755.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 699

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQASAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYDL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|299531007|ref|ZP_07044420.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
 gi|298720964|gb|EFI61908.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
          Length = 811

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/586 (20%), Positives = 236/586 (40%), Gaps = 19/586 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           + +V L  +   + +L       G+ S+ ER    +    D V   +         P   
Sbjct: 205 IGLVSLWVWNTWRLILLREQVQDGLNSEKERAETTLAALSDAVITTNAKGMVNYVNPAAI 264

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRD-----NFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +LGL   S        +   +  D           +++        R +    VR  D+
Sbjct: 265 GLLGLQKQSYLDKPIKQVLQFYTMDASITSEGLLAQLVNDTRETTVVRDEQTHWVRRTDH 324

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +    M   +G     + +  D++ +++ ++ I  NA  D LTG+ NR  F  R
Sbjct: 325 SIVPVKVLGSAMQ-RDGQASGAVFVLRDVSREQQYMDQISWNARHDTLTGLENRGEFERR 383

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L  +L            ++ ID+D++K IN+  G A GD+VL  ++R +   L+  D LA
Sbjct: 384 LQKMLTQ-GLHQVKPYALLYIDLDQFKLINETSGHAAGDEVLCEVSRMLQANLRETDCLA 442

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F ++L +   S   +        +  +     E+ +    SIG        + +
Sbjct: 443 RMGGDEFAVLLENCPPSNVASIAEKLRLAAQQLQTTWGEKILRTGFSIGAVHVPGDAVNA 502

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHP 726
           S++L+  ++A Y AK RG N V  ++            +     +  A++     L    
Sbjct: 503 SDLLRMVDMACYQAKERGRNKVFFYKAEDGIYSRYVSEMEWATRIRTALDEDRFCLYAQS 562

Query: 727 IIRLMDEEI-----VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           I  L   +      +  E L++        ++   F+  AE   ++ +++ +++ R  + 
Sbjct: 563 IAPLQARKHSRHSGMHFEVLLRLRDESGQILAPGHFIPAAERYGLMPSLDRWVITRALQT 622

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +      A +      IN++   L D+ L E ++  + +   +P ++     E+  +GN 
Sbjct: 623 LAQQPGHAKLVE-TCAINLSGPSLDDDGLLEFVKEQLQQHAIAPQKLCFEIIETSAIGNL 681

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
             +  L+  LR +G    LDDFG   S L+YL  +P D +K +G  +      +   A++
Sbjct: 682 SNATRLIQSLRALGCRFALDDFGVGMSSLTYLKQLPVDYLKIDGGFVRDMLKDKGDHAMV 741

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             I  + + +    IA+ +      +EL  MG DY+Q   +A P  
Sbjct: 742 EMINRIGQTLGKKTIAEFVESREIAEELMTMGVDYVQGYAIARPKP 787


>gi|326343291|gb|EGD67058.1| hypothetical protein ECoA_02734 [Escherichia coli O157:H7 str.
           1044]
          Length = 652

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 246/569 (43%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 94  ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 147

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 148 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 207

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 208 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 264

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 265 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 323

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 324 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 383

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 384 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 442

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 443 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 500

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 501 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTAYSSL 560

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 561 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 620

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 621 KNGINERQGFLFAKPMPAVAFERWYKRYL 649


>gi|330719845|gb|EGG98336.1| GGDEF domain/EAL domain protein [gamma proteobacterium IMCC2047]
          Length = 579

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 219/438 (50%), Gaps = 7/438 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +   +      D LTG+ NR  F DRL   +  +      +  ++ I++DK+K IND 
Sbjct: 136 RDAHLKLSFRDHYDKLTGLVNRTLFYDRLLHAMQRAERSRQ-KVVLLTINLDKFKYINDC 194

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  +     R+   ++  D LAR +G+ F +IL   +N   +      + + +A
Sbjct: 195 YGREAGDTAICVAAERLQSCVRKSDTLARNNGDEFAVILEGVSNESDVLRMVEQISEQLA 254

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
            P  +   ++ +  SIG A + S+ +    +L+ A LAM HAK   G     +     + 
Sbjct: 255 KPYTIPGDQLHLGCSIGVAFYPSAGVNPEALLRAANLAMGHAKRTPGCSHCFYTEELSTK 314

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +++++++ +   A+  +E  L++ P + ++  EIVG+E LI+W HP  G +S  EF+ +
Sbjct: 315 ATNQLILEAEFRRALRRNEFRLMFQPRVDIVSGEIVGMEGLIRWQHPSRGLLSPDEFIPL 374

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  ++  +  +++ +    +   ++Q +   + I +N++ +   D +L E +  +I K
Sbjct: 375 AEETGLVVTMGYWVIHQACLALKYLQEQGHF--VRIAVNLSFRQFQDKKLRETVARIIKK 432

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S ++   +E+ VM N + +R  +  + K+G+  +LDDFGT  S  +++  +P  +
Sbjct: 433 TQVDASYLEFELTETAVMANEQETRRCMDEISKLGVHFSLDDFGTGYSSFAHIQGLPITS 492

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +  S   ++   I+++II +A N+   +IA+ +     +  L    CD +Q  
Sbjct: 493 LKIDKSFVENSAACDEDAVIVKAIINLAHNLNMKVIAEGVENFAQLVLLRDHKCDQVQGY 552

Query: 939 HVASPLGFNSILKLLKER 956
                + F ++ + L ++
Sbjct: 553 FYHKAMSFENVCQRLVQQ 570


>gi|148258820|ref|YP_001243405.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bradyrhizobium sp. BTAi1]
 gi|146410993|gb|ABQ39499.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bradyrhizobium sp. BTAi1]
          Length = 892

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 216/437 (49%), Gaps = 8/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++    I   A+ D LTG+PNR      +   ++     +     +  +D D +K +N
Sbjct: 417 ERQEVRSTISQVAYHDMLTGLPNRARIPSMIAEAINACP--EGSHLAIAFLDADNFKDVN 474

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD+ LV+   R+   ++  D+L RL G+ F I+L +  ++L+ +  A  +  +
Sbjct: 475 DTLGHAAGDEFLVAFANRLRAQIRPGDMLGRLGGDEFVIVLQN-RDALEASLAAARITAA 533

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +AMP+ + +R++ ++AS+G + +  +      ++K A+ AMY AK  G      F     
Sbjct: 534 LAMPLTIGKRQVPMSASMGLSLYPDNATDIETLIKQADGAMYKAKRAGRATYRFFSADID 593

Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +     +     L  A+ +  L L Y P I   +  I G+EAL +W  P  G +S S+F+
Sbjct: 594 KLAEERLMHSTALREAIASEALTLNYQPQICTRNGAIHGVEALARWHDPVLGEVSPSKFI 653

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I+ I ++ +++  + + SWR      P  I +N++  +  +  L   +  ++
Sbjct: 654 PLAEECGLIEQIGVWSIKQACQQMASWRRAGLDIPC-ISVNLSPINFQNVNLAAVVAQIL 712

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +        + L  +E V++         +  LR +G+ L+LDDFGT  S LS L  +P 
Sbjct: 713 AANDLPAKMLMLEITEGVILNERATVIATMSELRNMGVGLSLDDFGTGYSSLSRLAQLPI 772

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S M    + +   AI+ +++ + ++++  ++A+ +  E   + L  +GCD +Q
Sbjct: 773 HELKIDRSFMRDFENDQGTRAIVTAVVRVGQSLDVKVVAEGVETEPQRRLLAELGCDAMQ 832

Query: 937 DSHVASPLGFNSILKLL 953
               A P+   +  + L
Sbjct: 833 GFLFARPMAAGAFSRWL 849



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 405 ERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           ER +L       S   V   D     + T     +I G +S  + G     L  +     
Sbjct: 138 ERNALLTSVADRSNRAVIVTDHELKILYTNAAFCSIFGYSSAEVLGRQVETL-LVGPCTD 196

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 L   V   RG ++ +  +        W    ++   N  G +   +G+ +DI E
Sbjct: 197 PATVERLKQCVEDDRG-VEDDLMIYDKAGCEIWTTAHVKAHRNQRGKVKYLVGLLSDIRE 255

Query: 522 QKKSL 526
            K+  
Sbjct: 256 TKQLR 260


>gi|145298745|ref|YP_001141586.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851517|gb|ABO89838.1| GGDEF/EAL protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 625

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/486 (24%), Positives = 219/486 (45%), Gaps = 20/486 (4%)

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                          + E R R       W   + R +        + +    DIT++K 
Sbjct: 157 EAFYQKLSRLDEVVAEGECRTRK---GMRWFQYQFRHIQQG----AQILLTMRDITDRKL 209

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   A+ D+LTG+ NR   +  L     +       R  ++ +D+D +K +ND  G
Sbjct: 210 EELEHRHLAWHDSLTGLLNRYGLMKSLEAYCGM-----GGRFALVFMDLDNFKLVNDNYG 264

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L  +  R+ ++      LARL G+ F  ++   ++S +  + A  M   +  P
Sbjct: 265 HKAGDRLLERVAGRLKQVCPRDVELARLGGDEFTALVPLAHSSDRAQEVADLMLSQMTKP 324

Query: 645 INLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
           + L    E+T+  SIG A +         ++  A++AMY AK  G    + F  S  +  
Sbjct: 325 LQLSGVPEVTIGGSIGIAIYPDDADDGDTLITRADMAMYQAKQMGRLRWQRFTPSMQQTL 384

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +K+ L  A+   EL L Y P + +   +++G EAL++W +P  G++S  EF+ +A
Sbjct: 385 HRKLTLKQFLAKAIGRQELSLCYQPQVDVAQGKLIGFEALLRWHNPVLGHVSPVEFIQLA 444

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE+ +I+ I  ++L      +  W+       + + +N++   L    L E +   +   
Sbjct: 445 EEMGLIREIGSWVLSTALAQMAHWQQAC-QVRVPVSVNLSGFQL-STSLPELVAQQLKAY 502

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S + L  +E+V+M + +    +L  L + GI + +DDFGT  S L+YL  +P DT+
Sbjct: 503 GVDASLLTLELTETVLMLDMKGCIEILDGLSEQGIKIAIDDFGTGYSSLAYLNRLPIDTI 562

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S + G     + ++R+ + MA ++   I+A+ +  E ++  L   GC   Q    +
Sbjct: 563 KLDRSFVVGLN---LPVIRATVAMATSLGLGIMAEGVEDENELAALRAQGCHVFQGFLFS 619

Query: 942 SPLGFN 947
            P+   
Sbjct: 620 KPMTVA 625


>gi|87119623|ref|ZP_01075520.1| c-di-GMP phosphodiesterase A-related protein [Marinomonas sp.
           MED121]
 gi|86165099|gb|EAQ66367.1| c-di-GMP phosphodiesterase A-related protein [Marinomonas sp.
           MED121]
          Length = 684

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 124/443 (27%), Positives = 220/443 (49%), Gaps = 12/443 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +   +   A+ D LTG+ NR+   D L   +        +   +  +D+D++K IN
Sbjct: 230 ERESAEAQLREYAYFDLLTGLSNRRHLSDILHNAIIKIQHQPTI-GALFYMDLDRFKHIN 288

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAI 635
           D LG AVGD +LV++ +R+ E       +ARL G+ F I++    ++ +         A 
Sbjct: 289 DSLGHAVGDALLVTIGKRLSEFKNDDTSVARLGGDEFVILIPDIADTEEKAHEAATQLAN 348

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  SIA P  L+   +  +ASIG +       T  ++L++A++A+Y AK  GGN    +
Sbjct: 349 KILTSIAEPHTLIGHLLYTSASIGISIIRQDSNTGQDVLRHADIALYKAKAEGGNTYHFY 408

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R+ I++ L  A+EN+E YL Y       D +I+G E L +W HP  G IS
Sbjct: 409 ENQLHIQAEQRLSIEQGLHSAIENNEFYLAYQAQCN-KDGDIIGAECLARWKHPVLGEIS 467

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCE 812
             +F+ I+EE   I  +  ++L+     +  W  Q        + INI+     D    E
Sbjct: 468 PGDFIPISEETRQIYQLGDWVLKTAFLQVTKWLHQGLPHKFTRLAINISPIQFQDPNFVE 527

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q L+ +    P  I+L  +ES +  +   ++L + +L+ +G+SL+LDDFGT  S L +
Sbjct: 528 RVQELLVECKCPPQLIELEITESCLFKDEHLAKLKVEQLKDMGLSLSLDDFGTGYSSLRH 587

Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + SL+      E    I  SI+ +A+ +   ++A+ +  + ++  L  +
Sbjct: 588 LRELKLDVIKIDQSLIRDLHLNEIDKDITDSILSLAQKLNMKVVAEGVENQEEMSALLEL 647

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
           GC++ Q  + + P+   +  KL+
Sbjct: 648 GCEFYQGFYFSKPINAEAFEKLV 670


>gi|162148350|ref|YP_001602811.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786927|emb|CAP56510.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 141/742 (19%), Positives = 283/742 (38%), Gaps = 47/742 (6%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLV-NLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
           M     A AWV+ G           L  +L    + + R        +  +     +   
Sbjct: 38  MYFILVADAWVLAGTFIHRAPLWLTLYASLLLTAICLSRLVVWWKKRNVALTVETAFAEL 97

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            R +     +T    A    LF           +   +      ++            + 
Sbjct: 98  RRANRVAAALTVVFPAWAFALFSYGDALEQSHVAFFLVISILGTMFCLI---------HL 148

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
           R+  LI A +    + +              +    V G  ++V+LI       ++    
Sbjct: 149 RSAALIVAAVAGSAFVVFFASTGQPVFIGMAVNVVFVIGASVVVVLIQNRDFVRMVNASI 208

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTP-------DIATILGLASGSMHG 447
            ++       R    +      V   +    ++             I  +L + +  + G
Sbjct: 209 AARSKEQAQNRLLRMIDDMPVAVMTVEPDTLKINYVNETSKRLVRRIEHLLPIKADDLPG 268

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +     H   +        +     R  L  E            + +++  +++++G
Sbjct: 269 TCIDVFHR-HPQHQRRILGDPANLPHNARISLGPEV-----------IDLKVSAVTDTDG 316

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +  +     +T++ +S   I   A  D LTG+PNR +F + L   L         R  
Sbjct: 317 TYIGPMLTWALVTKEAESERRIFQMAHYDILTGLPNRITFHEELDKRL----GTPGNRVG 372

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENN 626
           ++ +D+D +K +ND  G  +GD +L  +  R+      P  +  RL G+ F +++  +N 
Sbjct: 373 LLFVDLDGFKLVNDTRGHRIGDILLTQVASRLRATCNSPATVVGRLGGDEFAVLVPHDNA 432

Query: 627 SLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                  A      ++ P +L  +R I +TAS+G A           +L  A++A++ AK
Sbjct: 433 EEAALLAARV-VAFLSEPYDLDYDRSIQITASVGIALAPLHGEDGETLLSRADIALHVAK 491

Query: 686 HRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALI 742
             G      F+       +  + ++  L   +++ E L++ Y  II +    +   EAL+
Sbjct: 492 TAGKGEFRMFQPEMEARIQERMRLEARLQATLKSEEGLFVFYQSIIGIDSGTVTAREALV 551

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS  EF+ +AE+  +I  +  F+L    RD   W D        + +NI++
Sbjct: 552 RWYHPERGWISPGEFVPVAEQSGLIDQLGGFVLNTACRDAARWTD-----GARVAVNISA 606

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             +    L   + A +  +   P R+++  +E+ ++ +   +   L +LRK+G+ + LDD
Sbjct: 607 SQIGKGTLVPSILAALEASGLPPERLEIEVTETALLYDERDTTAELQQLRKLGVRVALDD 666

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L++L   PFD +K +GS +          A+++ +  + K +  T +A+ +  
Sbjct: 667 FGTGYSSLAHLRAFPFDKIKIDGSFVRDAVDRPDCAAVVQVVASLGKRLGVTTVAEGVET 726

Query: 921 EIDIKELTRMGCDYIQDSHVAS 942
           +  +  +   GC  +Q      
Sbjct: 727 QAHLDRVREEGCTEVQGYLFGR 748


>gi|56475563|ref|YP_157152.1| response regulator receiver [Aromatoleum aromaticum EbN1]
 gi|56311606|emb|CAI06251.1| predicted response regulator receiver [Aromatoleum aromaticum EbN1]
          Length = 599

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/432 (27%), Positives = 213/432 (49%), Gaps = 7/432 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  ++   +   A  D LTG+PNR  F   L   L     +      V+++++D++K +N
Sbjct: 157 ETSRAERHVRHLACTDTLTGLPNRTRFETMLQARLA-PTRNPLPALAVLLLELDRFKFVN 215

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L + +RR+   +     +ARL G++F ++L + +    +A  A  +   
Sbjct: 216 DTLGHELGDRLLRAASRRLVRAVGTGACVARLGGDKFAVMLQNVSAPT-VASVARTITTE 274

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +A P  L   EI V ASIG A   S    +  +L++AE AMY AK            +  
Sbjct: 275 LAKPYVLDGHEIFVRASIGIAVHPSDGEDAGALLRHAEAAMYRAKRSSQRRAFYEAAMEG 334

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + ++ DL  A+E+SEL L Y P +      +V +EAL++W HP  G I    F+ 
Sbjct: 335 SARAHLRLESDLHHALEHSELVLHYQPEMEAASGRMVAVEALVRWQHPSHGLIGPDTFIP 394

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE+ +I  I  ++L+     + +WRD  +   + + +N ++  L D ++ + + A + 
Sbjct: 395 LAEEVGLIGPIGAWVLDSACAQLKAWRDAGH--SLRVAVNFSADQLQDRDITDRVAAALE 452

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +       + +  +ESV +     +   L  L+++G+ L +DDFGT  + LSYL ++P D
Sbjct: 453 RFGLQADDLVVEITESVWLDPESAAIDNLHHLKRLGVRLAIDDFGTGYASLSYLKHLPVD 512

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +T   E     AI+R I+ +A  ++  +I + +  +     +  MGCD +Q 
Sbjct: 513 ILKIDRSFVTDLAEVGVDAAIVRGIVSLAHKLDLEVIVEGVETQTQCALVRDMGCDVVQG 572

Query: 938 SHVASPLGFNSI 949
             +   L   + 
Sbjct: 573 YLLGRTLSPTAF 584


>gi|284046986|ref|YP_003397326.1| diguanylate cyclase/phosphodiesterase [Conexibacter woesei DSM
           14684]
 gi|283951207|gb|ADB53951.1| diguanylate cyclase/phosphodiesterase [Conexibacter woesei DSM
           14684]
          Length = 636

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 126/442 (28%), Positives = 218/442 (49%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ ++ E I+     D LTG+PNR  F DRL   L  +     +   V  +D+D++K 
Sbjct: 171 VAERIRARERIVHQTLHDALTGLPNRVLFEDRLELALVRARRRGTI-CAVFFLDVDRFKI 229

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L  +  R+   ++  D +AR  G+ F ++     +       A  + 
Sbjct: 230 VNDTLGHRAGDALLREVAARLRGAIRASDTVARFGGDEFAVVCDGLADERDALRIASTLH 289

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++++P  L      + AS+G A  T  + T+  +L++A+ AMY AK  G +  E +   
Sbjct: 290 AALSVPCELEGESHVLGASVGIALATGREATAEALLRDADAAMYRAKELGRSRTELYDER 349

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  RV ++ +L   +E  EL LVY P++ L    I  +EAL++WDHP+ G ++  E
Sbjct: 350 LRARLDARVRVERELHQGLEAGELRLVYQPVVSLTTGGIRSVEALVRWDHPERGTLAPGE 409

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQ 815
           F+ IAEE  +I  I   ++    R   SWR++     P+ I +N+A++ L      E + 
Sbjct: 410 FLPIAEESGLIVRIGEHVMREACRQAASWRERLGDDAPLPIHVNLAARQLSQTTFVESIV 469

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++++T    + I L  +ES V+ N   +  +L  L+ +G  + LDDFG   S L YL  
Sbjct: 470 RVLAETGARAADIALEITESSVIENTLLASDMLRELKTLGFEILLDDFGIGYSSLGYLQQ 529

Query: 876 IPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +P D +K + S +         E+  AI+R+I+ MA  +   ++A+ +  +   +    +
Sbjct: 530 MPIDVLKIDRSFIDALGADADDERASAIVRAIVGMADALGIDVVAEGVETDEQARLSQAL 589

Query: 931 GCDYIQDSHVASPLGFNSILKL 952
           GC   Q  H A P    ++  L
Sbjct: 590 GCSLAQGFHFARPDRPETVEAL 611


>gi|209515922|ref|ZP_03264783.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209503580|gb|EEA03575.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 689

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/438 (25%), Positives = 223/438 (50%), Gaps = 7/438 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  ++SL  +   A  D LT +PNR    +RL+  L  +A       +V+ +D+D++K +
Sbjct: 236 SHLRRSLRRLEHQAKYDALTDLPNRVLLDERLSESLVRAAATGQ-NVSVLFLDLDRFKDV 294

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  +GD +L ++ RR+  LL   D +AR  G+ F  I+    ++ ++ +    + +
Sbjct: 295 NDSLGHRIGDLLLKAVARRLQRLLDATDFVARYGGDEFV-IVAERADARELTEMLDRLIR 353

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
            ++ P ++ E E+ + ASIG +++         + +NA+ A+Y AK RG N  + +    
Sbjct: 354 EMSEPYSIGEHELYLEASIGVSTFPQDGAKPELLTRNADAALYVAKSRGRNGYQFYEPEL 413

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               ++++ +   L  A + +ELYL Y P + +    IVG EAL++W   + G +S + F
Sbjct: 414 SRAAAEKLRLTTRLRRAAKANELYLAYQPQVDMKTGRIVGAEALLRWHDEELGEVSPAAF 473

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I+ I  ++L +      +W      PP+ I +N++   L   +L   +++ 
Sbjct: 474 IPLAEETGLIQNIGTWVLRQACLQANAWVRAGL-PPVRISVNVSPLQLERADLPGVVRSA 532

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +    +    ++L  +E  +M N + ++     LR++G+S+ +DDFGT  S LSYL    
Sbjct: 533 LRDADWPAELLELEVTEGTLMRNADEAQRAFRELRELGVSIAIDDFGTGYSSLSYLKRFS 592

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +          A+  +II +A+ +   ++A+ +  ++  + L R GC   
Sbjct: 593 VDRIKIDRAFVCEIGRDTELEALSLAIIAIAETLSFDLVAEGVELDVQREFLVRHGCTVA 652

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    +  +   ++ ++L
Sbjct: 653 QGFLFSPAVSPEALAQIL 670


>gi|198244652|ref|YP_002217358.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939168|gb|ACH76501.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 699

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQASAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYDL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|297538046|ref|YP_003673815.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297257393|gb|ADI29238.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 908

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/610 (21%), Positives = 275/610 (45%), Gaps = 50/610 (8%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQ-------------GIFSDGERQSLAVLGSGDI 417
           L G +  +V++     ++         Q              + +  E+          +
Sbjct: 314 LSGNISGVVLVFRDVTLERQAEKSIQEQNDQLEKKIQERTFELHASEEKLRSVTDNVPAL 373

Query: 418 VWDWDIVRDRVTTT--------PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT-IL 468
           +   D     +           P+  +I GL    + G            DR       +
Sbjct: 374 IAYVDASERYIYANQKYLNQFAPEYKSIEGLTVSEVLGN-----------DRYAIAAPNI 422

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
              +  +             +    W ++   P  + +G    Y  + +DIT++K +   
Sbjct: 423 VQALLGKSVSYD---WQPFPN---VWQMVSYVPTVDVHG----YYVLISDITDRKLAELA 472

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +      D LTG+PN   F   L   ++ S T D    +++ I+I+K  +IND LG   G
Sbjct: 473 LHKITHFDALTGLPNETQFTQLLIEAIESSMTLDQ-SFSLLQINIEKLSEINDALGFGRG 531

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VL     R+  ++K  D +ARL G+ F I+L + +++  + + A  +   +  PI + 
Sbjct: 532 DQVLKEFANRLKFVVKDSDCIARLRGDEFAILLKNSSSAETV-NLANQLENVLVQPIFIS 590

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMI 707
              + ++A IG A +    +T+ ++ ++ +LA+  AK +G    V      S +  R  +
Sbjct: 591 NIPLDISAKIGIAIFPEHGLTTHDLYRHVDLAVRLAKKKGARYFVFDHNQDSDKPHRSAL 650

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A++++E  L   P +     ++  +E LI+W+HP+ G I   EF+ +AE++ +I
Sbjct: 651 AAELRHAIDHTEFELYLQPKVAFDTGQVCSVEGLIRWNHPERGLIPPYEFITLAEQIGLI 710

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           K +  +++    + I  W     + P  I IN+++++L + +L E +  L ++       
Sbjct: 711 KPLTQWVMNTAVQLIHDWERNGFIMP--IAINLSARNLHEIDLVERIHHLRTRWSIGTGL 768

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ES +M + +++  +L  +R+ GI L++DDFGT  S LSYL  +P   +K + S 
Sbjct: 769 LEIEVTESSIMDDAQQALKVLQLIREEGIDLSIDDFGTGYSSLSYLQRLPIQFLKIDQSF 828

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++    +++ + I++S I +A ++   ++A+ +  +    +L+ + CD  Q   +A P+ 
Sbjct: 829 VSAMLTSKESLMIVKSTIDLAHDLGKKVVAEGVETQAQWNKLSELDCDIAQGYFIAKPMP 888

Query: 946 FNSILKLLKE 955
            +  L  +K+
Sbjct: 889 VDVFLNWIKD 898



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 63/171 (36%), Gaps = 5/171 (2%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           +VG  ++I+++  F +I+  L   Y S+  +     + S  +   GD V   D       
Sbjct: 177 VVGTALVILLIFSFLLIRRQLKEIYLSRKKLAESENKLSTTLHSIGDGVLATDTEGRITH 236

Query: 430 TTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRA 487
                  + G       G    +    I+ +        +   +  R+ + L+    +  
Sbjct: 237 MNSVSEKLTGWQFSEAKGHPIEDVFNIINESTGQPALIPIAKAITTRKVQNLEDHTILIQ 296

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            +   + +     P+ + +G+I   + +  D+T ++++ + I      D L
Sbjct: 297 RNGNMYPIADSAAPIIDLSGNISGVVLVFRDVTLERQAEKSIQEQ--NDQL 345


>gi|114797598|ref|YP_759221.1| signalling protein N terminal repeat/GGDEF/EAL domain-containing
           protein [Hyphomonas neptunium ATCC 15444]
 gi|114737772|gb|ABI75897.1| bacterial signalling protein N terminal repeat/GGDEF/EAL domain
           protein [Hyphomonas neptunium ATCC 15444]
          Length = 725

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/712 (20%), Positives = 285/712 (40%), Gaps = 63/712 (8%)

Query: 250 LLIWRACSEIALSSSLIIFLFMY--LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
             IW     +   ++LI     +  L   R  A V      G   +  +   +  +    
Sbjct: 28  HHIWHHDLGLVFLAALICLAGSWVTLQLFRRAAGVSGAQRVGWHILTAVAAGAAIWCTHF 87

Query: 308 ASIARITLASIVLY---YTYFIIYHGMKGYERAVLLIPAWILI--FIWFIGLWMAITKRL 362
            ++          +    T   +   M G         A +     +    + +      
Sbjct: 88  IAMLGFDPGVPFSFDPILTILSLIVAMIGAAAGFSFATARMKFAPLLGGAIVGLGTAAMH 147

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              ++  ++ G +   + L+  ++I  V  +      +      +   +  +  +     
Sbjct: 148 YTGMMGYSVQGIVTWNMPLLALSIIFSVFLSASAVHLMLRAANTRKQIIAAAFLV----- 202

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                         +L      M       L  +      +    L   +          
Sbjct: 203 ----------AAIVMLHFT--GMAASHFEPLGVVLAEPMQDAVKALAFAIAG-------- 242

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                              +  +            D   + +S E +   A  D+LTG+P
Sbjct: 243 ---------------VGFLIIGA-----GVASYLIDARVRSESYEQLRHMAVTDSLTGLP 282

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR SF  RL   +D +     L+  ++ ID+D++K+IND+ G   GDDVL +L  R+  L
Sbjct: 283 NRVSFTGRLDHEIDTAKAR-GLKVALIGIDLDRFKEINDLRGHGAGDDVLRTLAARMRAL 341

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  + +ARL G+ F  +     N   ++DF + +  ++  PI L E  +T  AS+G + 
Sbjct: 342 LREGEFVARLGGDEFAAV-KRMQNGADVSDFLVRLEAALYEPIALDEFHVTPGASLGVSI 400

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
           +       + +L NA+LAMY AK   G +V  +  S     R    +  DL  A +  EL
Sbjct: 401 YPDDATDKNALLGNADLAMYRAKSTPGTNVAFYDPSMDEVVRKRKNLANDLRQAFDRDEL 460

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L +     +   +I G EAL++W HP+ G+IS   F+ IAEE  +I  +  ++L +   
Sbjct: 461 DLHFQVQKSVSTGDIRGYEALVRWKHPEHGDISPEVFIPIAEEYGLILQLGEWVLRKACA 520

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
              SW      PP  + +N++       +L + +  ++ +T  + +R+++  +E+ +  +
Sbjct: 521 RAASWL-----PPYKVAVNVSPLQFAHADLPKVILEILVETGLAANRLEIELTETAIFAD 575

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
            ERS  +L +++ +G+++ LDDFGT  S L  L   PFD +K + S +          A+
Sbjct: 576 KERSLHMLRQIKGMGVTIALDDFGTGYSSLDTLRAFPFDKIKLDKSFIDHVDSNEQTAAM 635

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +R+++ + ++++  ++A+ I     +  LT  GCD  Q   +  P+  + I+
Sbjct: 636 VRAVLALGRSLKIPVLAEGIENSGQLAMLTFEGCDEAQGFLLGRPMSIDRIV 687


>gi|318059491|ref|ZP_07978214.1| phosphodiesterase [Streptomyces sp. SA3_actG]
          Length = 681

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 220/440 (50%), Gaps = 8/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T    +         +D LTG+PNRQ  L+R+ T LD +  +   R  +++ID+D+++ +
Sbjct: 223 TSLWMAHARAEEQ-LRDPLTGLPNRQWLLERIWTALDAAEREGG-RTALLLIDLDRFRSV 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+ +  R+   L      ARL G+ F I+L + +++      A  +  
Sbjct: 281 NDTLGHLAGDRLLLQVAERLRVSLPREAEAARLGGDEFAILLPAADSTTSAQRLARRLVG 340

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVS 698
            +  P++L    + + AS G A +    + +  +L+ A++AMY AK  R G  V   +  
Sbjct: 341 ELGSPLDLDGLTLVLEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRD 400

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   DR+ +  DL  A++  ++ L Y P +R  D E+ GLEAL++W HP+ G +   EF+
Sbjct: 401 SNTPDRLGLLGDLRRALDTGDVELHYQPKVRF-DGEVAGLEALVRWVHPERGKVPPDEFI 459

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   ++  +  ++LE     +  WR Q    P  + +N++ +D+        +   +
Sbjct: 460 AIAESSGLMPYLTEYVLETALAQVARWRAQGLYVP--VAVNVSPRDVHTPGFAGAVAGRL 517

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P  ++L  +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P 
Sbjct: 518 ARHGVPPGALQLEITEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPV 577

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q
Sbjct: 578 SELKIDRSFVARLAIDTEDAEIVRCTVDLAHSLGLVVVAEGVEDDETWERLRDLGCDAVQ 637

Query: 937 DSHVASPLGFNSILKLLKER 956
              V++ +        L+ R
Sbjct: 638 GWLVSAAMPPEETTAWLRAR 657


>gi|298291472|ref|YP_003693411.1| diguanylate cyclase/phosphodiesterase [Starkeya novella DSM 506]
 gi|296927983|gb|ADH88792.1| diguanylate cyclase/phosphodiesterase [Starkeya novella DSM 506]
          Length = 768

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 213/436 (48%), Gaps = 12/436 (2%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D L G+ NR   +  L   L         R  ++ +D+D +K IND LG  VGD +
Sbjct: 337 LAYTDPLCGLANRTMLMRTLGERLQRVG--SGERLAILFLDLDGFKDINDTLGHHVGDLL 394

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +  R+  L     + +R  G+ F I++   N    I     A+  ++  P  +  + 
Sbjct: 395 LAEIGNRLKRLPFSSLLASRFGGDEFVILVAVANEREDIEAAGSAILDAVRQPAPIAGQT 454

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKE 709
           +TV+ SIG        + + E+++ A++A+Y AK  G  +V+ F  R+      R  ++ 
Sbjct: 455 LTVSGSIGCTVAPDHGVDAIELIRLADIAVYRAKAEGRGNVQIFAPRMEREVMRRRDLEL 514

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   EL + Y P   +  E ++G EAL++W HP  G IS  EF+ IAE+  +I  
Sbjct: 515 ELQRALAEGELAVYYQPQFAIDGEAVIGFEALVRWVHPTQGLISPGEFIPIAEQTGLITE 574

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +++++L         W        + + +N++  D    +L   ++ ++ +T + P R++
Sbjct: 575 LDMWVLRNACAQARGW------GSVKLAVNLSPVDFRTRDLEAQVKRILEETGFPPERLE 628

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E+++ GN   +   L  LR++GI + LDDFG+  S L Y+     DT+K +     
Sbjct: 629 IEITENLLFGNQPEAFASLAALRRMGIRIALDDFGSGYSSLGYIRRFRVDTIKIDRGFTQ 688

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               ++   AI+  ++ +A+ +  T+ A+ +     ++ L  +GC ++Q   +A P+  +
Sbjct: 689 NIGQSDDAAAIIDCVVRLARALAITVTAEGVETREQLRYLQLVGCHHVQGYLLAGPVPVS 748

Query: 948 SILKLLKERFPLVKNT 963
           SI + L+   P    +
Sbjct: 749 SIERYLERATPAASAS 764


>gi|124515283|gb|EAY56793.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptospirillum rubarum]
          Length = 1156

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 119/596 (19%), Positives = 237/596 (39%), Gaps = 14/596 (2%)

Query: 367  IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE---RQ-SLAVLGSGDIVWDWD 422
                 +       +      I   +A       +  D +   R    A+  S        
Sbjct: 552  WGLLTLSAEHEENLSRRVRDILLDMAEKVRMAFLRFDEQNHIRLQRTAMESSRSPFLIAS 611

Query: 423  IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQY 481
                          ++G +         +         D +   T+ +          + 
Sbjct: 612  PDGSVEWANAAFLCMIGQSQDD--RTPLSLPDLFPEPVDTNPPMTLFEILKAGL--FFEG 667

Query: 482  EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
            E   RA           + P+ +    I   +    DIT +K   + I   A  D+LTG+
Sbjct: 668  EVPGRARSGDTFITETIVSPILDGQERISHLLIHMKDITLEKVQEKAIWELAHVDSLTGL 727

Query: 542  PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
             N  +F++ L      +   +N +  V  +D+D +K+IND +G   G+  L ++  R+ +
Sbjct: 728  LNWNAFMETLDREFRQAKE-ENRKMAVFYLDLDGFKEINDTMGHETGNIFLRTIAGRLRQ 786

Query: 602  LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                 D +AR+ G+ F ++     +   +      +   ++ P+ +  R    T SIG A
Sbjct: 787  CPALSDAVARIGGDEFVLLCKRTGDFQTLQSEIRTLNDLVSRPVEIGGRSFQTTVSIGVA 846

Query: 662  SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSEL 720
             +      S+++++ A++AMY AK               R       +  L  A+    +
Sbjct: 847  FYPDDADKSADLVRKADIAMYQAKKSKKGWRFFDPEMEERIQERYRNELSLRQALRGGHI 906

Query: 721  YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            +L++ P I L    + G+EAL++W + +   ++   F+ +AEE  +I  +   + E+   
Sbjct: 907  FLMFQPQIDLARRRLRGIEALVRWKNAEGVILTPKSFIALAEESGIILELGEIVFEQSFE 966

Query: 781  DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
             +  W +   +    + +N++ +        EG+   I++   +  R+ L  +ES++M N
Sbjct: 967  TLHRW-ETLGLRGFRLSVNVSPRQFWSKNFWEGLSGRIARQPEAGQRLCLELTESLLMQN 1025

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            PE     L  LR +G+ + +DDFGT  S L+YL   P D +K     +      E+   I
Sbjct: 1026 PEEIGNRLSDLRSMGVRIAIDDFGTGYSSLAYLSRFPVDEIKVPQEFVLRMKNHEQDRMI 1085

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +R+II MA+++   ++ +      +I  L  +GC  +Q   +A P+    +   ++
Sbjct: 1086 VRTIIQMAQSLGIDLVGEGAETRAEIDMLFGLGCTTLQGYGLARPMPIEPMEDFIR 1141


>gi|319764727|ref|YP_004128664.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
 gi|317119288|gb|ADV01777.1| diguanylate cyclase [Alicycliphilus denitrificans BC]
          Length = 748

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 210/456 (46%), Gaps = 11/456 (2%)

Query: 508 DILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +I         +  + +KS + I   A+ D LT +PNR    +R+   LD          
Sbjct: 276 EISNVFRALRSMQARLRKSEQAIHKLAYYDALTELPNRALLRERMQQALDGDGDGSACHG 335

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++++D+D +K IND LG   GD  L  + RR+ + +    ++ARL G+ F ++    + 
Sbjct: 336 ALLLVDLDHFKVINDTLGHEEGDKHLCQIARRLTDAVAGRGLVARLGGDEFVVLAQHLHA 395

Query: 627 SLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                     + A  +  +I  PI+L  R +  +AS+G   +     ++ E+LK A+ AM
Sbjct: 396 GEARAQAQARELAEQVLAAITSPIHLAGRPMHTSASLGVCLFRPGASSTKELLKRADTAM 455

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    F     S    R  ++  L  A+   +L L Y   +     + VG+E
Sbjct: 456 YQAKSVGRNGYRFFDPVLQSQLEARAALETALHGAIGAGQLALHYQVQVDAQ-RQPVGVE 514

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP  G +  ++F+ IAE+  +I  +  ++L+     + +W  Q +   + + +N
Sbjct: 515 ALLRWRHPLHGQVPPAQFIPIAEDSDLILTLGEWVLQTACAQLRAWAGQPHTRALTVSVN 574

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++        E + A +++T      + L  +ESV++ +   +   +  LR +G+   
Sbjct: 575 VSARQFAQPGFVEQVHAALARTGAKAGLLVLELTESVMLHDIADAVRKMQALRCLGVRFA 634

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LS L  +P   +K + S +     +     I+++I+ MA+ +   ++A+ 
Sbjct: 635 LDDFGTGYSCLSQLQRLPLHQLKIDRSFIQDMGARASDAVIVQTIVGMARTLGLHVVAEG 694

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  E     L ++ C   Q      P    ++   L
Sbjct: 695 VETEAQRTVLAQLQCPAFQGYLFGVPQPAAALEAWL 730


>gi|16766683|ref|NP_462298.1| signal transduction protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993976|ref|ZP_02575069.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16421949|gb|AAL22257.1| putative membrane domain protein involved in signal transduction
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205328074|gb|EDZ14838.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248551|emb|CBG26389.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995597|gb|ACY90482.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159937|emb|CBW19456.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914416|dbj|BAJ38390.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225190|gb|EFX50249.1| hypothetical protein ylaB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131750|gb|ADX19180.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990246|gb|AEF09229.1| putative signal transduction protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 699

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYDL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|261856271|ref|YP_003263554.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
 gi|261836740|gb|ACX96507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
          Length = 958

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 134/443 (30%), Positives = 228/443 (51%), Gaps = 11/443 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +Q K+ + I   A++D LTG+ NR  F  RL+  L  +         +++ID+D +K IN
Sbjct: 512 QQIKADQHIRQLAYEDYLTGLSNRALFHQRLSQTLAEA-RSSMHLGALLLIDLDHFKTIN 570

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-----ISENNSLKIADFAI 635
           D LG  VGDDVL ++  R  E      +LAR  G+ F  ++     + +      +  A 
Sbjct: 571 DALGHDVGDDVLKAVAIRTKEATDEKTLLARFGGDEFVALMLLDTTVIDTAEQLASKTAK 630

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++  P+++  R+ +V ASIG   +     T  ++L++A++A+Y AK  G N+V+ F
Sbjct: 631 HILDALKAPLSVNGRDFSVGASIGVVVFPQENETELDILRHADMALYKAKKHGRNNVQLF 690

Query: 696 RVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S     + R+ ++E L  AV N+EL L Y P + + D   +G+EAL++W HP+ G +S
Sbjct: 691 NPSLQIAATTRLKLEEGLRAAVGNNELSLNYQPQVNI-DGCCIGVEALLRWHHPELGVVS 749

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ IAEE  +I  I L++LE+  +D+  W +        + +N++   L+       
Sbjct: 750 PDEFIPIAEETGLIHPIGLWVLEQACKDLSRWHENGIPFQGHMAVNVSPWQLISTNFVNE 809

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +    P RI L  +ES ++ N   S   L +LR +G  ++LDDFGT  S LSYL
Sbjct: 810 IKQIVEQYPLDPKRIMLEVTESTLLHNRYESIAKLEQLRHLGFKISLDDFGTGYSSLSYL 869

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             IP D +K + S +     T+    +L SI  +  ++   IIA+ +  +   + L  MG
Sbjct: 870 KDIPLDQLKIDKSFIDELEKTDDEQPLLASIYAIGIHMHLAIIAEGVETQNQCERLISMG 929

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
               Q    + PL    ++  L+
Sbjct: 930 GKAFQGYLFSKPLTELDLIAWLR 952



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 109/366 (29%), Gaps = 28/366 (7%)

Query: 178 PNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFG 237
            +      N     + I  G+ +L+  F     ++ +++            L    +   
Sbjct: 21  QHATSALENPIDKVQFIFAGITALIIPFAFFQILMMQATTESDFIWALKANLSAGLLIGA 80

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
            L     + +    +W     +A  S  I         N W                 + 
Sbjct: 81  LLPWFAAIYTQRKTLWHWVLSLASLSLAIA--------NLWQPYSLQYNLFSGISSKQMP 132

Query: 298 CMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357
               Y   +  S +   +A+ V+   Y    +    + R        IL   + +     
Sbjct: 133 WGETYTDGIGTSGSLSYVAATVVVLIYIYCLYAFWRHYRHKCRWVDLILFLAFTLSFIAT 192

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
           I   L    I   ++ G V     IG  +   +  +   +  + S  +R    +  S   
Sbjct: 193 IIGILIRLSILDWILPGPVGF---IGMVLAMSIALSINKNHRLQSSEKRFRTLIEQSSFG 249

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPI---------RNWLPYIHINDRDNFRTIL 468
           +    +  +   T P    + GL +                +  +P+IH   R      +
Sbjct: 250 IQLVSVHGNIELTNPAWQKMRGLIANDFDQGPISRDHYVLRQGLMPFIH---RGFAGESV 306

Query: 469 DSF-VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           D   + +       E+      N   W+  +I P+ + NG +   I +  D+TE+++   
Sbjct: 307 DIPPLRWETPEPNAEY----HSNATRWIQTKIGPIRDENGSVSHIILVHEDVTEEQQVET 362

Query: 528 GILCNA 533
            I   A
Sbjct: 363 AIHKIA 368


>gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane protein [Herbaspirillum seropedicae
           SmR1]
 gi|300074797|gb|ADJ64196.1| phosphodiesterase transmembrane protein [Herbaspirillum seropedicae
           SmR1]
          Length = 797

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 128/456 (28%), Positives = 233/456 (51%), Gaps = 9/456 (1%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +           E       I   A+QD LTG+PNR  F D L   +  +A    
Sbjct: 332 DEIGRLGNAFETMR--LEIASRELKISRLAYQDQLTGLPNRVQFADLLRDAIAEAARTPG 389

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILI 622
               ++++D+D+++++NDVLG + GDD+L  +  R+  +LL     L+RL G+ F I+L 
Sbjct: 390 AACYILMMDLDRFQQVNDVLGHSFGDDLLRQVALRLSAQLLHPGAKLSRLGGDEFAILLP 449

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +     + A+ + +++  P++L ++ + + A IG + + +   +S  +L +AE+AMY
Sbjct: 450 GV-DQEGAVEQALQILRALEQPLSLHQQTVDLGAGIGISGYPAHGQSSDVLLSHAEVAMY 508

Query: 683 HAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK +G G  +    +     + + +  +L  A+E  E  L   P + L   ++VG EAL
Sbjct: 509 IAKRKGSGLVIYDPAIDQSSQESLSLLSELRRALERDEFMLYLQPKLELCSGQVVGAEAL 568

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G I    F+  AE    I+ + L+M+E++AR     + Q     +   +N++
Sbjct: 569 VRWIHPEKGFIGPDNFIPFAETTGFIRMLTLWMMEQVARLSEQLQQQG--VQLKFSVNLS 626

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++DLLD EL     A++ +    P+ + L  +ES +M +P R++  L RL  +G +L++D
Sbjct: 627 TRDLLDQELPTAFAAILQRHRLQPAALCLEITESAIMDDPARAQNTLERLSNMGFALSID 686

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P D +K + S +      +    I+RS + +  N+   ++A+ + 
Sbjct: 687 DFGTGYSSLAYLKRLPVDELKIDKSFVMKMAQDQDDAKIVRSTVDLGHNLGLRVVAEGVE 746

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E     L +MGCD  Q   +  P+     L   ++
Sbjct: 747 SEEVWFLLRQMGCDQGQGYFMGKPMPVQHFLAWREQ 782


>gi|150378106|ref|YP_001314701.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150032653|gb|ABR64768.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 551

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 211/438 (48%), Gaps = 15/438 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR+ F D L   L     +   R  +M ID+D +K +N  LG A GD
Sbjct: 120 RHQALHDVLTGLPNRRQFSDDLDARL---PVEGVERIALMQIDLDDFKPVNGTLGHAAGD 176

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     R+  +L    I  RL+G+ F ++  S  +       A ++  +   P  +  
Sbjct: 177 LVLQGTAERLQAMLGEGGIAYRLAGDEFAVLQRSGRSME-AKRLAESIVNAFKEPFTVEG 235

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
            ++ V AS+G A          +++K A++A+Y AK+ G     SF  S          +
Sbjct: 236 IDVFVGASVGIAIAPDDGNDGEQLMKAADIALYAAKNDGRGRARSFNRSMLIMLEQREML 295

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L +A++  + +L Y P+I    + IVG EAL++W HP  G +  + F+ +AE   ++
Sbjct: 296 RRGLRVALQERQFFLEYQPLI--ETDAIVGFEALLRWQHPYAGIVPPAVFIPLAEADGLM 353

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LE+  R  ++W +        + +N++  + L   L + +   +     S  R
Sbjct: 354 VEIGEWVLEQACRQAVNWPEH-----FTVAVNLSPAEFLRKGLTDRVANTLDSAGLSAER 408

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV++     +   L  L  +GI ++LDDFGT+ S L+YL   PFDT+K +   
Sbjct: 409 LELEITESVLLERTANNLDTLHTLEVMGIRISLDDFGTQYSSLAYLKNFPFDTIKIDRYF 468

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    + EK  AI+R+I+ +A  +   + A+ +        L ++ CD +Q + + +   
Sbjct: 469 IKDVETDEKSQAIVRAIVALAHGLGMRVTAEGVETAAQAAWLRKLRCDRLQGNLLGAATP 528

Query: 946 FNSILKLLKERFPLVKNT 963
            +SI   L++     + +
Sbjct: 529 PDSIRNFLRQSSMASQRS 546


>gi|88799764|ref|ZP_01115338.1| sensory box protein [Reinekea sp. MED297]
 gi|88777498|gb|EAR08699.1| sensory box protein [Reinekea sp. MED297]
          Length = 574

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 117/571 (20%), Positives = 231/571 (40%), Gaps = 23/571 (4%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            SD  +    +      +   D  R+ V        + G     +   +  W    + + 
Sbjct: 3   ISDTAQFQAFIDAIPSPIALSDARRNVVMINTAFKQVFGYEMSDI-PDLEQWYQQAYPD- 60

Query: 461 RDNFRTILDSFVGYR--------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              +R  ++S   +R        +     E +VR    +     + +  +  + GD    
Sbjct: 61  -PAYRQTVESRWQHRMEDSIGKSKPFKPIELKVRCKSGETKAAKVSMTQL--TQGDQTLN 117

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +   +D  EQ    + +   A  D LT +PNRQ F +RL   +  S         +++++
Sbjct: 118 VVSFDDRLEQVYFHQRLWRQANFDGLTDLPNRQYFTERLHQEVLTSRRAQRA-FALVLLN 176

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--SLKI 630
           ID +K IN+  G + GD +LV  + R+   ++  D++ R+S + F I++   +     ++
Sbjct: 177 IDSFKSINENHGQSCGDALLVETSSRLQASVRNSDVVGRMSSDEFVILVRDIDPDKPDQL 236

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  +  +I  P  + +  +T+T S+G + + +   +   +L +A  A+  AK  G +
Sbjct: 237 QTLAQKLASAIEAPFYIAQETLTITCSMGISIYPNDSDSPDILLSHANQALSRAKQTGRS 296

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F        +    +K  +  A+ +    +   PI+R  D   V  EAL +W  P+
Sbjct: 297 AIHFFTQELHNEIQRTRYLKTAMQQALRDHSFEVFLQPIVRCSDSRCVKAEALARWRLPE 356

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS +EF+ IAE+   I  +   +  ++ + +         P   I IN +    +  
Sbjct: 357 EGFISPAEFIPIAEDNQFIHELGHQVFTKVTQMLNQLTKSV-DPDFQISINKSGAQFVQG 415

Query: 809 ELCEGMQA--LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            L         +         + +  +ESV++   E     +   +K G    +DDFGT 
Sbjct: 416 SLPTHRLWPMAMKNLRLHNQNLVIEITESVLLDTAEEVNNRINHFQKAGFQFAIDDFGTG 475

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S  +YL   P   +K +   +      +    +  ++I MA  ++  ++A+ +      
Sbjct: 476 YSSFAYLARFPASFLKIDRQFIQQIHSDQQMQVLCEAMIAMAHKMDMEVVAEGVETNEQF 535

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           K L  +GCDY Q  + + PL F+     L++
Sbjct: 536 KLLNSLGCDYCQGFYFSKPLAFHEFEDWLEK 566


>gi|148546421|ref|YP_001266523.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148510479|gb|ABQ77339.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 754

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 221/442 (50%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L  +   +N R  VM +DID +K+
Sbjct: 276 LSQLDQARASLQQAAHYDALTNLLNRRGFNQVFAERLVETQASEN-RLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +   I    +  D++AR  G+ F  ++ S N+  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIAHHIKAATRSHDLVARFGGDEF-CVVTSLNSRDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  PI+L  R + +T SIG + +     T+ E+LK+A+LA+Y +K  G N +  F  S
Sbjct: 394 QRMKDPIDLGGRRMVMTTSIGISIFPDDGGTAEELLKHADLALYQSKDNGRNSLNFFNDS 453

Query: 699 ---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                     + +E     +E   L + Y PI      ++  LEAL++W HP+ G +   
Sbjct: 454 LKARASIALQLEEELRLALLEERGLCVHYQPIFDQRSGQVAKLEALVRWQHPQHGLLGPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L+ L     D+   +       + + +N ++  L  +EL   ++
Sbjct: 514 RFVGIAEANGLIIDLDLWALRHACADLAHLQRHGYDE-VQVTVNCSAVTLSHDELPNEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +     +P  ++L  +E+ ++G+ +R+  LL R+R +G++L++DDFGT  S L+YL  
Sbjct: 573 KALFHAGLAPRHLELEVTENALVGDIQRTVSLLKRVRALGVTLSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + +     ++K   I+++II MA  +   ++++ +        L   GCD
Sbjct: 633 LPLDVLKIDRTFLQDVPGSQKDREIVQAIIAMAHTLHLRVVSEGVETAEQRAFLESHGCD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   +  P+    +  LL+ 
Sbjct: 693 YLQGYLLGHPVPLAELRPLLER 714


>gi|88858513|ref|ZP_01133155.1| putative orphan protein; putative sensory-box domain
           [Pseudoalteromonas tunicata D2]
 gi|88820130|gb|EAR29943.1| putative orphan protein; putative sensory-box domain
           [Pseudoalteromonas tunicata D2]
          Length = 834

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 244/575 (42%), Gaps = 19/575 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++ +  +    + ++S  +R    +     +V + +     +   P    + GL+   + 
Sbjct: 265 VEQLSQSQSRYKELYSAHQR---ILQHLNTVVLELNSAGQILFINPAWEKLTGLSLKQVI 321

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                   +     +      +   +  +  + ++E +++       W   R++ +   N
Sbjct: 322 NKPLA--EFCSPETQALVSNAVSQIMLGQIQQKKFELKLQHQHGHAVWAECRMQSIV-VN 378

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
              +      ++I E+K++   +   A  D LT + NR  F  +L  +   +  D N + 
Sbjct: 379 KVTVGVTASIDNIHERKQAELQLHHLAHHDTLTKLHNRYYFDLKLNQLCKDT-EDSNAQH 437

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ ID+D +K IND  G   GD VL  + +   + L     + R+ G+ F +IL +   
Sbjct: 438 ALIYIDLDHFKIINDSQGHHQGDIVLKQIAKTFQKNLHEGSTICRIGGDEFAVILENVEL 497

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                                  ++ +++ SIG    T++   +SE LK +++A+Y AK+
Sbjct: 498 LEAHLIAEGLCHAVENYQFQAPGQQYSISCSIGLTLITANNSDASECLKQSDIALYVAKN 557

Query: 687 RGGNHVESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           RG N V  +      S++    +     +  A+   +L + + PI    ++++   EAL 
Sbjct: 558 RGRNLVHCYTYEDADSNKKLAELAWAHQVRSAMLQDQLEIHFQPIWGFKEQQVAYFEALS 617

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        I  + F+   E +  I  ++  ++++                  I IN+++
Sbjct: 618 RLRV-DGQLIYPNRFIPALELIADINLLDHCVVKKAIAYAGQSTTLN-----KIAINLSA 671

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D  L   ++  +      P+RI    +ES  + N   +RL++ +L ++G S ++DD
Sbjct: 672 QAFSDEGLLTTIEEALKSQKVDPTRIVFEITESASISNLTATRLMIEKLNQLGCSFSIDD 731

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S  SYL  +P + VK +GS +          A++ +I  ++ +++ T +A+ +  
Sbjct: 732 FGTGFSTFSYLKQLPANQVKIDGSFVKDMINDPIDKALVNAIKDISHSLQKTCVAEFVEN 791

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +     L ++G DY Q   ++ PL F  I + +K+
Sbjct: 792 KETFDSLRKIGVDYAQGYLISRPLPFKGISQAIKK 826


>gi|307316675|ref|ZP_07596118.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306897873|gb|EFN28616.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
          Length = 564

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 13/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+PNR+ F D+L   L      +  R  +M ID+D +K IND LG   GD
Sbjct: 132 LHQATHDVLTGLPNRRQFSDQLRGAL---PVPNGARLALMQIDLDDFKPINDTLGHGAGD 188

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     RI  +L+  +   RL+G+ F +I    +   +    A A+  +   P  +  
Sbjct: 189 AVLKMAADRIRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFKEPFTVEG 248

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             + V AS+G A          +++K A++A+Y AK  G     +F  S          +
Sbjct: 249 INVFVGASVGIAVAPGDGNEVEQLMKAADIALYAAKKDGRGRSSTFTRSMLIVLEQREML 308

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++  + +L Y P+++     +VG EAL++W HP  G I  + F+ +AE   ++
Sbjct: 309 RRSLRTALQEGQFFLEYQPLVKPSS-SVVGFEALLRWRHPLVGIIPPNVFIPMAEADGLM 367

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LER  R  ++W          I +N++  + L   L + +   +        R
Sbjct: 368 SDIGRWLLERACRAAMNWPSH-----FTIAVNLSPAEFLHEGLTDRVAQTLDLVGMRADR 422

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV++     +   L  L  +G+ ++LDDFGT  S LSYL   PFDT+K +   
Sbjct: 423 LELEITESVLLERTINNLDTLNTLNVLGVQISLDDFGTFYSSLSYLKNFPFDTIKIDQYF 482

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      EK   I+RSII +A  +   + A+ +        L + GCD +Q   +  P+ 
Sbjct: 483 IKDLERDEKSQTIVRSIIALAHGLGMDVTAEGVETAEQATWLQKEGCDRLQGYFLGVPMR 542

Query: 946 FNSILKLLKE 955
             +I   L++
Sbjct: 543 AEAIADFLRK 552


>gi|300115282|ref|YP_003761857.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299541219|gb|ADJ29536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 966

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 255/641 (39%), Gaps = 26/641 (4%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
               F+++  M   +R VL +P         +   ++ + +      +  ++    + + 
Sbjct: 318 ILLLFLLWKPMARLQRVVLSLPYLAENAFEKVRKRLSHSVQPAWGRDEIDVLNNTAMTLS 377

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL----AVLGSGDIVWDWDIVRDRVTTTPDIAT 436
                +   +            D  R+       +  +  I+   D              
Sbjct: 378 YQLEALQAQIQERTRHLAERGDDLARERDFVTGLLNTAQVIILTQDSAGRVTMLNRQGQR 437

Query: 437 ILGLASGSMHGPIRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           I+G ++  + G     L     +           L+     RRG++  +  ++  D    
Sbjct: 438 IIGYSADEITGRPFCELLTGDKVSPE----LFQQLEELRLGRRGQVCVDTGIQCRDGSQR 493

Query: 494 ---WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W   R+    + +      + + +D+TE++++ + +   A  D LT + NR+ F   
Sbjct: 494 IISWFHSRLAVHPSRD---AVVLSVGHDVTEREQAEQRLAWLADHDPLTELFNRRRFQYE 550

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
              IL  ++     R  ++  D+D++K IND  G   GD +L  +  ++ ++++  D++A
Sbjct: 551 FERIL-RASIRHGYRGGLLYFDLDQFKYINDTSGHQAGDALLRMVADKLRQVVRGSDVVA 609

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ F +++   +    +        +   +  +      +++ SIG A +     T 
Sbjct: 610 RLGGDEFAVVICECDVEGVLQIAQNICNQLSILEFSARGGNHSISLSIGIALFPLHGATI 669

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHP 726
            +++ NA++AMY AK  G      F       +R+      KE +  A+      L + P
Sbjct: 670 RDLMANADVAMYQAKEEGRGRWHLFSSDEQVRERMQQRVYWKEQIEQALREDRFLLYFQP 729

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           ++ +    I   E L++    +   IS ++F+ +AE+  +I AI+  +L +         
Sbjct: 730 VLDIRTHTIGHYEVLLRMRDHRGRIISPAQFIPVAEQSGLIHAIDHLVLRKAITQQAKLW 789

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            Q     + + IN++ + + D EL   ++ L+  T  +PS +    +E+  + +   +  
Sbjct: 790 SQGYH--LTLSINLSGRVVDDPELVPILEDLLRTTGVNPSSLMFEVTETAAVADLVAAER 847

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            + R++  G    +DDFG   S   YL  +P D VK +G  +     + +    ++++  
Sbjct: 848 FMYRIKAHGCRFAVDDFGVGFSSFFYLKRLPVDYVKIDGMFVRELAKSHQDQVFVKALSE 907

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +A+ +    +A+ +     +  L   G DY Q  ++  P  
Sbjct: 908 VARGLGKKAVAEFVEDAEALALLHEYGVDYAQGHYIGRPTP 948


>gi|92114679|ref|YP_574607.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
 gi|91797769|gb|ABE59908.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Chromohalobacter salexigens DSM 3043]
          Length = 836

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 133/553 (24%), Positives = 252/553 (45%), Gaps = 14/553 (2%)

Query: 405 ERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           ER +LA      + D +   D  +  +   P    + G ++    G   + L     +D 
Sbjct: 260 ERMALAETVFDSTHDGILVTDADKRIIDVNPAFTKLTGYSADEALGRKPHLLSS-GKHDA 318

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + +  +  +   +++G    +      D +       I  + +++G I  YI +  DIT+
Sbjct: 319 NFYHNLFATV--HQQGYWTGDIWNVRKDGRQLIENATISAIHDADGTITHYIAVFRDITQ 376

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +      +   A  D LTG+ NR+ F D L  +L   +    +   V+ ID+D +K +ND
Sbjct: 377 KHLKQARLERRAIYDPLTGLFNREHFGDALENLLSGLS-YTGIGIAVLFIDLDDFKPVND 435

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A GDD LV++ +R+ +  +  D++ARL G+ F I L    ++ K    A  +   +
Sbjct: 436 TYGHAAGDDALVTIAQRLKQQTRSTDLVARLGGDEFVIALAGMRSAEKAEKVAFKILDDL 495

Query: 642 AMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             PI L  E  IT++AS+G A    S+     ++  A+ AMY AK RG N V        
Sbjct: 496 ISPIALRGEHAITLSASVGIAYTDDSRFAPDALIAAADSAMYEAKSRGKNQVAI--TEHQ 553

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +++   +   L  A+++ EL L Y PI+ L DE IV  EAL++W HP+ G ++   F+ I
Sbjct: 554 QANGDDLYTRLQTALDDGELALFYQPILSLNDERIVSFEALVRWYHPEQGLLAPHHFIDI 613

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
                + +  + +++ + A  +  ++       + + IN+    +   +L + M     +
Sbjct: 614 VNHSSLERVYSAWLVNQAAHTVQRFQA--RDMAVTVSINVTRDQVESGQLADDMAQARER 671

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +   + +   E+    + + +   L   R++G  + LDDFG+  S L+Y   +P D 
Sbjct: 672 HALASPFLNVEVVETAQFHDIDLAYNQLQHARRLGAQIALDDFGSGVSSLTYASQLPIDI 731

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + +++       ++   +  II MA  ++  ++A+ +     +  L ++GCD +Q  
Sbjct: 732 VKIDQAVIRHLAERPQQRRYVSGIIDMAHAMQRVVLAEGVESVEQLDVLRQLGCDMVQGF 791

Query: 939 HVASPLGFNSILK 951
            +  PL    +  
Sbjct: 792 LIGHPLPSQELEA 804



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D   D    +  +A   GL   ++      +   I  +DR   R  L S     R   Q 
Sbjct: 157 DGRGDFPHVSERLADYCGLERMALTHDAECFFSRIEDDDRTRLRVSLTSSATSLRLC-QV 215

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL-----CNAFQD 536
            FR         W+     P   SNG  L + G   D+T +K + E +       ++  D
Sbjct: 216 VFRYHHPTRGLRWLECSAVPTRLSNGGTL-WHGYTTDVTARKLATERMALAETVFDSTHD 274



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 413 GSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
           G    + D D+     V        + G     + G     L  +  +        L   
Sbjct: 18  GIALTIADGDLPGCPLVFANKGFEQLTGYTREEVLGRSCRLLQTV--DLAPEASHCLRRA 75

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           + +R   +      R  D   +   + + P+ + +G     +G+  D++++ +       
Sbjct: 76  IEHRT-PVTMTHENRRKDGSRYDNELTLAPLYSRDGH-CYLVGVQRDVSQRLRPRTRWRH 133

Query: 532 NAF 534
            + 
Sbjct: 134 QSR 136


>gi|323494689|ref|ZP_08099792.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
 gi|323311122|gb|EGA64283.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
          Length = 831

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 101/441 (22%), Positives = 219/441 (49%), Gaps = 6/441 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D    + + + +   A  D LTG+PNR      ++  +  S      +  VM +D+D
Sbjct: 382 INHDFEHLQSTKDQLEYIAAHDELTGLPNRSQLHQHISDGIKQSEKA-CCQLAVMFVDLD 440

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND+ G + GD +L  + ++    L   D +AR  G+ F        N  +     
Sbjct: 441 DFKKVNDLYGHSAGDRLLSEIGKKFEAFLGPNDYVARFGGDEFIFCFSGLTNLAETESKV 500

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++++       +  + +  + SIG + + S      E++  A++ +Y +K R    V  
Sbjct: 501 DSIKQVFKQQFVIDGKVLFASCSIGVSMYPSDGNEPEELISKADIVLYKSKARQKGDVLF 560

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   ++       +++ +L  A++  EL +VY P +     ++ G+E+L++W++ + G++
Sbjct: 561 FDSSINKQVQYDFLLERELRGAIDRGELSVVYQPQVCAESGKLYGVESLLRWNNSQLGHV 620

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE+ +I  +  +++ R   +            + + INI+   L++ +L  
Sbjct: 621 SPLEFISLAEEIGLINQLGDYVINRSCEEFSQLFPS-PHHDLMLSINISPMQLMNEQLIP 679

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A  +K      RI L  +E+V++ +  +   ++ +L+++G +++LDDFGT  S LSY
Sbjct: 680 NLLAATAKHQLPTHRITLEITENVLITDLPKVTPIISQLKELGFTISLDDFGTGYSSLSY 739

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K +   +     +E+  +++++I+ +A++ E  ++A+ +  +   K L   
Sbjct: 740 LSNLPLDELKIDRVFVDKMLSSEQSDSLVKAILAIARSAEMRVVAEGVETDAQRKVLIEY 799

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GCD +Q   +  P+  + + +
Sbjct: 800 GCDVLQGYLIERPISADQLAE 820


>gi|58582239|ref|YP_201255.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426833|gb|AAW75870.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 825

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 112/423 (26%), Positives = 208/423 (49%), Gaps = 7/423 (1%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G  +GD +L
Sbjct: 263 ALHDPLTRLPNRVLLHEHLLQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHQLGDRLL 321

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+
Sbjct: 322 VVVAERLNAHRRAHGSLARLGADEFV-LVADIADPGDAAALAAHLVQALAVPFMVSNHEL 380

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
            +++S+G A +     +  ++L +A+ AM HAKH G N    F  S      +R+ +  +
Sbjct: 381 RLSSSLGIAQYPEDATSGPQLLTHADAAMNHAKHAGRNRYSFFERSMTATTRERLQLLHE 440

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  +
Sbjct: 441 LPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLL 500

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L +  R +  WR   +     + +N+++  L    L + +   +S+ + +P ++ L
Sbjct: 501 GSWVLRQACRQMHDWRAAGHG-DWRVAVNLSAIQLASPSLLDEVATTLSEFMLAPGQLTL 559

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT- 889
             +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +  
Sbjct: 560 EITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQA 619

Query: 890 -GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S+ + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+    
Sbjct: 620 MDSSAEDIAIVAAVVALAHTMRLQVVAEGVETIAQRNTLERLGCDQLQGYLLGRPMDAER 679

Query: 949 ILK 951
            + 
Sbjct: 680 FIA 682


>gi|330446201|ref|ZP_08309853.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
            svers.1.1.]
 gi|328490392|dbj|GAA04350.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
            svers.1.1.]
          Length = 1022

 Score =  439 bits (1130), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/556 (22%), Positives = 256/556 (46%), Gaps = 14/556 (2%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW-LPYIHIND 460
               +  S A   S + V   D                      + G            ND
Sbjct: 462  KRLQALSRAAEQSTESVVITDKNGFIQYANGAYLKQSNKTFKDLVGSHSASCFDDYFDND 521

Query: 461  RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             +   T+ +  +  +  +       +  +N   ++   I P+   +G I  YI  + DIT
Sbjct: 522  NER-ETLFNKLMSGQSIQHVI---AKKKENDITYIDYTISPIRGDDGKICNYIATSKDIT 577

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRL-TTILDLSATDDNLRPTVMVIDIDKYKKI 579
            ++      +   A  D++T +PNR  F   +  + L+ +      +  VM+ID++  K++
Sbjct: 578  DRITYENKLHRLAHYDSITQLPNRTLFSQDIGRSALEAAKHQ--AQVAVMIIDLELTKQL 635

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ++ +     + +L+ L++RI   L+  D+LAR+  + FGI++ + +++  I   A  + +
Sbjct: 636  HESMSNEEIEKILLILSKRIKSNLRSNDVLARIDTDEFGILIHAYHDTQVINQLAERVLQ 695

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +I+ P++L  +  +V+A+IG A  + S+     + K A +A+Y AK   G++   F  + 
Sbjct: 696  NISSPLSLDCQVFSVSANIGIALSSDSETDPKILQKYAHIALYRAKALAGSNYCYFTEAM 755

Query: 700  FRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               +   +  + DL   +        Y P +  +   + G+EAL++W + K    S ++ 
Sbjct: 756  EVENVQRLLLESDLRRTIGTDSYEYFYQPKVSAITHRLCGVEALLRWKNCKGEYRSPADV 815

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + I E   +I      ++++  + +  W+D+ +     + INI+++ LL+ +L + +   
Sbjct: 816  IPILESSELIIEAGEHLIQQACKQLKQWQDKGHFFD--LAINISARQLLEADLVQSITEA 873

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            IS++   P  ++L  +ESV+M + + +   L  LR +GI + +DDFGT  S L+YL   P
Sbjct: 874  ISQSGCDPRYLELELTESVLMCDVQFALTQLQELRDLGIKIAIDDFGTGYSSLAYLSRFP 933

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             + +K +   +      +  I I RSII +A N+  TI+A+ +  +  ++ L  +G + +
Sbjct: 934  INILKVDREFIKELPFNKDSITICRSIIELAHNLNLTIVAEGVENQDQLEFLESLGVEEL 993

Query: 936  QDSHVASPLGFNSILK 951
            Q  H   PL   S   
Sbjct: 994  QGYHFDKPLPLASFED 1009


>gi|227820011|ref|YP_002823982.1| sensory transduction protein kinase [Sinorhizobium fredii NGR234]
 gi|36958623|gb|AAQ87091.1| Sensory Transduction Protein Kinase [Sinorhizobium fredii NGR234]
 gi|227339010|gb|ACP23229.1| sensory transduction protein kinase [Sinorhizobium fredii NGR234]
          Length = 564

 Score =  439 bits (1130), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 205/430 (47%), Gaps = 13/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+PNR+ F D+L   L         +  +M ID+D +K IND LG   GD
Sbjct: 132 LHQATHDVLTGLPNRRQFSDQLRAAL---PVPSGAKLALMQIDLDDFKPINDTLGHGAGD 188

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     RI  +L+  ++  RL+G+ F +I        +    A A+  +   P  +  
Sbjct: 189 TVLKMAAERIKGVLRERELAYRLAGDEFAVIQWKFEQPREAERLAEAIVNAFKEPFAVDG 248

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             + V AS+G A   +      +++K A++A+Y AK  G     +F  S          +
Sbjct: 249 ISLFVGASVGIAIAPADGNEIEQLMKAADIALYAAKKDGRGRARTFTRSMLIVLEQREML 308

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++  + ++ Y P ++     +VG EAL++W HP  G I  S F+ +AE   ++
Sbjct: 309 RRSLRTALQEGQFFIEYQPFVKPRA-SVVGFEALLRWRHPLVGIIPPSVFIPMAEADGLM 367

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  +MLE+  R  ++W          + +N++  + L   L + +  ++  T     R
Sbjct: 368 SEIGQWMLEQACRAAMTWPSH-----FTVAVNLSPAEFLHEGLTDRVAQILDLTGIRADR 422

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV++     +   L  L  +G+ ++LDDFGT  S LSYL   PFDT+K +   
Sbjct: 423 LELEITESVLLERTINNLDTLNTLSLLGVQISLDDFGTYYSSLSYLKNFPFDTIKIDQYF 482

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      EK   I+RSII ++  +   + A+ +  E     L + GCD +Q   +  PL 
Sbjct: 483 IKDLEHDEKSQTIVRSIIALSHGLGMDVTAEGVETEGQAAWLQKEGCDRLQGYFLGFPLP 542

Query: 946 FNSILKLLKE 955
             +I   L++
Sbjct: 543 GAAIGDFLRK 552


>gi|87118430|ref|ZP_01074329.1| sensory box protein [Marinomonas sp. MED121]
 gi|86166064|gb|EAQ67330.1| sensory box protein [Marinomonas sp. MED121]
          Length = 809

 Score =  439 bits (1130), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   I   A  D+LT +PNR++F + L + LD +   D L   ++ +D+D +K IN
Sbjct: 350 ESQNAKNIIWQEANLDSLTNLPNRRNFKNELKSSLDKAK-HDKLTVALLYLDLDDFKAIN 408

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+    R+ + +     + RL G+ F II  +  +  +I   +  + +S
Sbjct: 409 DFYGHDVGDKLLIEAANRLVKTVNKTFGIFRLGGDEFTIIAENLTSYKEIETLSQTILES 468

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P ++ +  + ++ASIG + +      S  +L+ A+ AMY +K  G N  + F     
Sbjct: 469 LSAPYSINKESLYISASIGISLYPEHTSKSDTLLRYADEAMYSSKALGRNQYQIFTQQLH 528

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +    ++ + +DL  A++N+E  L Y PI+ L   +I   EALI+W+HP  G     EF+
Sbjct: 529 QDILYKMQVIQDLRSALKNNEFELHYQPIVSLNTGDIKKAEALIRWNHPIHGITMPLEFI 588

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQAL 817
            IAEE   I  I  ++ +  +  +  W D+     + + IN +           +     
Sbjct: 589 KIAEETSHIIEIGDWVFKTASSQLKQWMDKL-QLDLTMSINTSPAQYQHKNTSLDSWFEH 647

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +      P  I +  +ES++M         L      GI + LDDFGT  S L++L    
Sbjct: 648 LESLNLPPQNIIIEITESLMMKENTNIEKKLIEFCHQGIQVALDDFGTGYSSLTHLNKFD 707

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +   ++      +  +II MA  +  ++IA+ I  E   + L  +GCDY 
Sbjct: 708 IDFIKIDKSFIQHLSQHSQPLELCEAIIIMAHKLGLSVIAEGIETEEQRQLLMGIGCDYG 767

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    +SP+   +   LLK 
Sbjct: 768 QGYLFSSPMPAQAFEALLKS 787


>gi|257059245|ref|YP_003137133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256589411|gb|ACV00298.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 715

 Score =  439 bits (1130), Expect = e-120,   Method: Composition-based stats.
 Identities = 111/578 (19%), Positives = 233/578 (40%), Gaps = 14/578 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             ++IQ +       + +F + E   + +   GD V   D         P    + G A 
Sbjct: 137 NLSLIQEIEEHRRTKEALFCEKELAQVTLKSIGDAVITTDAKGYVTYLNPIAEYLTGWAE 196

Query: 443 GSMHG-PIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIR 500
               G  +      ++   ++     +   +   R   L     + + D   + +     
Sbjct: 197 KEAQGVHLFEVFEIVNEFTKEIVENPIIQALDEVRIVNLAKNTILISRDGTEYPIDDSAA 256

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +SNG ++  + +  D+TE +     +   A  D+LTG+ NR  F  +L   L  +  
Sbjct: 257 PIQDSNGKVIGAVIVFRDVTEARSLNRQLSWQASHDSLTGLINRLGFEQKLEEALLSAKK 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    +  +D+D++K +ND  G A GD++L  +T  + + ++  D LARL G+ F  +
Sbjct: 317 -ENQHHVLCYLDLDQFKVVNDTCGHAAGDELLRQITHLLQQRVRTSDTLARLGGDEFAFL 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +                        +  ++  SIG      +    + +L  A+ A
Sbjct: 376 LHQCSLEKATEIAETFRELIEKFRFCWNNKTFSIGVSIGVVEIDKNSKDKNSVLALADAA 435

Query: 681 MYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EI 735
            Y AK +G N V+ ++V +     +         +  A+E++  +L    I  L    + 
Sbjct: 436 CYAAKGKGRNCVQVYQVDNHELLKQRKERQWVVQINQALEDNRFHLYSQKITPLNSHLKP 495

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +  E L++        +S   F+  AE   ++ AI+ +++    +   ++  Q      F
Sbjct: 496 IYYEILLRLLDDNGQLVSPGNFLPAAERYGLMPAIDRWVISTFLKKYDNYYHQTVNKSDF 555

Query: 796 ----ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
                 IN++   +   +  E ++  ++ +      +    +E+  + N +++  L+  L
Sbjct: 556 EQNLYAINLSGASINSEQFLEFLKEQLTNSKIPLKNLCFEITETTAIANFDQAIELINEL 615

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +++G    +DDFG   +   YL + P + +K +GS +     +E   AI+ S   +   +
Sbjct: 616 QQLGCCFAIDDFGHGMNSFDYLKHFPVNYLKIDGSFVRNLVQSEVDQAIVESFNRIGHIM 675

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               IA+ +     + ++  +G DY Q   +A P+ F 
Sbjct: 676 NFQTIAEFVENAAILSKIEAIGLDYAQGYVIAKPVPFE 713


>gi|26991637|ref|NP_747062.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida KT2440]
 gi|24986731|gb|AAN70526.1|AE016694_9 sensory box protein/response regulator [Pseudomonas putida KT2440]
          Length = 708

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 246/567 (43%), Gaps = 16/567 (2%)

Query: 392 ATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                 Q +  + E         +  + + +   D         P I+ +L      + G
Sbjct: 137 RNRRMLQQLSRELETARAFNASILENAAEGILVVDAHGIIRFANPAISRLLAAPVQHLQG 196

Query: 448 PIRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                L  + +     +R          R+    ++ ++R    +   + +   P+    
Sbjct: 197 T--QLLDVVQLTSTSLWRESDFYKAYQGRQIYRVHDAQLRTQGGELVPVALSCAPLPADQ 254

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +    D++  +   + +   A  D LTG+ NR+ F       L  +   D  + 
Sbjct: 255 ---QAMVVTVLDMSAVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGALLRNERSDKAQ- 310

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M +D+D +K+IND LG   GD VL  +  ++ + L    +LAR+ G+ F  +  S   
Sbjct: 311 ALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGDEFTALFDSLPY 370

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +   FA  + + +++   +   ++ +  SIG A++         +L++A+ AMY AK 
Sbjct: 371 PEQAGRFAERLLERVSISHEVDGLDVCLGVSIGIATYPDCGANVEGLLRSADAAMYAAKQ 430

Query: 687 RGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      +    +     R+M+++ + +A+E  +  LVY P +   D  + G EAL++W
Sbjct: 431 AGRQQYRFYDQELNGRARSRLMLEDSVRMAIEQQDFTLVYQPQVAFHDGRLRGFEALLRW 490

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G++    F+ + EE  +I  +  ++  + A    +W D+   P + + I+++   
Sbjct: 491 QHPSVGDVPPGLFIPLLEEARLINRLASWIYRQGAAQRQAWYDRFP-PDLVLGISLSRAQ 549

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            +   L E +Q +I      P+++++  +E+ +M N + +   + RLR++G+ + LDDFG
Sbjct: 550 FVMPGLVEELQRVIQLYQLVPTQLEVEVAETSLMYNIDAAVKQIHRLRELGVRVALDDFG 609

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
                L  L  +P DT+K +  L+     +    A++RS+I +  +   T+IA+ +    
Sbjct: 610 AGDCSLRMLRDLPIDTLKLDRHLVARLPDSTVDAALVRSVIGLCADYRITVIAEGVETPA 669

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
               L   GC+Y+Q   VA P+     
Sbjct: 670 QAAWLKANGCEYVQGFLVAYPMTATDA 696


>gi|254523051|ref|ZP_05135106.1| gaf domain/ggdef domain/eal domain protein [Stenotrophomonas sp.
           SKA14]
 gi|219720642|gb|EED39167.1| gaf domain/ggdef domain/eal domain protein [Stenotrophomonas sp.
           SKA14]
          Length = 932

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/433 (27%), Positives = 215/433 (49%), Gaps = 12/433 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+ ++ + +   A  D LTG+PNR   LDRL   L L+  +      V+ +D+D++K 
Sbjct: 500 IGERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDALALARREGGPVFAVLFLDLDRFKL 559

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G A GD +LV + +RI  +    D++ARL G+ F ++L       +  DF   + 
Sbjct: 560 VNDSIGHAAGDRMLVEVAKRIVSMAGPEDVVARLGGDEFAVLLQCPQGLAQALDFGQRLL 619

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
            ++   + +  RE+  + S+G A W     T  E+L++A+ AMY AK +G +    F   
Sbjct: 620 LALQESMWIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCSIFDED 679

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +       + ++ DL  A+ N +    Y PI+RL D E+VG EAL++W H + G +    
Sbjct: 680 MREQAMRSLDLEADLRRAINNRDFVPFYQPIVRLSDGEVVGHEALLRWQHERRGLLLPGA 739

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +I+ ++  + E++   +            ++ +N++ +     E  + +  
Sbjct: 740 FLELGEESGLIEQVDWLIYEQVIAGL------GKGGQGYVSVNVSPRHFRSAEFSDRLFG 793

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+      P R++L  +E  ++ +   +  +L  LR+ GI + LDDFGT  S LSYL   
Sbjct: 794 LLDTCGADPRRLRLEITEVALLDDGPHTLRILQGLRERGIQVQLDDFGTGFSALSYLHRF 853

Query: 877 PFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           P  T+K + S + G      +   A++  ++ +A+ +    I + I  E   + L  +GC
Sbjct: 854 PISTLKIDQSFIAGLHGPEVQSTRALVEGVLSLARTLGIETIGEGIETEAQRQTLRELGC 913

Query: 933 DYIQDSHVASPLG 945
           DY Q   +  P  
Sbjct: 914 DYGQGYLLGRPAP 926


>gi|118590336|ref|ZP_01547739.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM
           12614]
 gi|118437308|gb|EAV43946.1| putative sensory box/GGDEF family protein [Stappia aggregata IAM
           12614]
          Length = 773

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 213/439 (48%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++   I   A  D LTG+PNRQ F  +L   +  S         V+ +D+D +K +N
Sbjct: 326 ERDRAERKIRYLANHDVLTGLPNRQEFKTKLEEKVSESDRT-GAPVAVVFVDLDNFKFVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRK 639
           D  G  +GD VL+ +  RI  +        R  G+ F +I+  E      + +F   +R 
Sbjct: 385 DSFGHGIGDQVLMIVAERIMSVHNGAHQAIRFGGDEFVLIVDGETAQKSALNEFMARLRN 444

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I   I + +    VT SIG A +     +++++L+NA+ AM+ AK  G +  + F  + 
Sbjct: 445 EITKTIQIDDLSFHVTCSIGAACYPQDADSAAQLLRNADKAMFDAKSAGRDSYKVFEKTR 504

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +++ + E++   +E+ E +L Y P   L+   IVG EAL++W HP  G +   EF
Sbjct: 505 PERSVNKLTLLEEMRKGIESGEFFLEYQPQYNLVSGRIVGAEALVRWQHPDLGRMMPGEF 564

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  +  ++     R    W+D     PI + +N++++   D  L   ++  
Sbjct: 565 ITLAEESGLIVPLGRWVTREACRQNKEWQDSGL-LPITVGVNVSARQFRDGGLISDVREA 623

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T    + ++L  +ES+++ N +++  L+   R++G+ L +DDFGT  S L+ L   P
Sbjct: 624 LQETGLDATYLELELTESLLIQNADQAVELMDDFRRLGVKLAIDDFGTGYSSLTALKIFP 683

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S ++     E    I ++II + + +   ++A+ +        L    C+ +
Sbjct: 684 LTRLKIDRSFISDLDFDESDRCIAKAIISLGRELGLCVVAEGVETAKQQAFLASCRCEVV 743

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  H   P+  +   KLL 
Sbjct: 744 QGYHFGRPMAASKFGKLLA 762



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +I  L       + +A    +  +    +     +    D ++  D     V     +A 
Sbjct: 17  IISSLGSELDRLNRIAALSANDELRLSKDSLHALLNEVSDYLYVKDRSSRFVMANQQVAL 76

Query: 437 ILGL-ASGSMHGPIRNWLPYIHI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            +GL     + G     L   H       F  I    +     R+ +E  +   + +  W
Sbjct: 77  DVGLLDVAQLIGKTDLDL---HPKETGLKFHAIEQEIMASNIPRIDFEEPLILENGKRKW 133

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                 P++NS G+++  IG++ DITE+K++L      
Sbjct: 134 FSSSKYPVTNSEGEVVGIIGLSRDITERKRALLLQQGQ 171


>gi|323136073|ref|ZP_08071156.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
 gi|322399164|gb|EFY01683.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
          Length = 659

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 208/441 (47%), Gaps = 9/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++  +       A  D LTG+PNR  F D +       +        ++ +D+D +K IN
Sbjct: 211 KRVLTHMDAEQQARTDALTGLPNRLGFTDAIEREFARMSRT-GAGFLLLCVDLDNFKTIN 269

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++LV+   R+   L+  D++ARL G+ F II    +        A  +   
Sbjct: 270 DRLGHPAGDELLVAAAERMRACLRGYDVVARLGGDEFAIIANGVDGRENAVALAERIILC 329

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSS 699
                 +  REI   AS+G A    +     E++K+A++A+Y AK RGG           
Sbjct: 330 FDESFLIEGREIYGAASVGGALAPINGADQRELVKSADIALYQAKQRGGCWRLFESNHDM 389

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   ++ DL   +   +L LV+ PII +    IVG EAL++W+HP  G ++ S F+ 
Sbjct: 390 ESRESRALELDLRRTISLRQLALVFQPIINVATGRIVGCEALLRWNHPTRGQVAPSLFIP 449

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I  I L+++E        +      P   + INI+   L   E  + +   ++
Sbjct: 450 LAEKTGFIDEIGLWVIEEACAAAAHFP-----PDFRVAINISPLQLRRQEFPDCVFEALT 504

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   PSRI++  +E+ ++ + E S   + +L   G+S++LDDFG   S L+YL  +P  
Sbjct: 505 RTQAEPSRIEIEITETALLADDEVSDAAIRKLSGAGLSISLDDFGAGYSSLNYLRKLPLH 564

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +     K+   AI+  +  MA +++  I+A+ +     ++ L  +GC   Q 
Sbjct: 565 RVKIDRSFVGDVLTKKDCAAIVTGVTRMAADLDMRIVAEGVETLAQLQWLRNVGCSEAQG 624

Query: 938 SHVASPLGFNSILKLLKERFP 958
             ++ PL     L  L    P
Sbjct: 625 YLISRPLPRQEFLAFLAAWRP 645


>gi|225567838|ref|ZP_03776863.1| hypothetical protein CLOHYLEM_03911 [Clostridium hylemonae DSM
           15053]
 gi|225163316|gb|EEG75935.1| hypothetical protein CLOHYLEM_03911 [Clostridium hylemonae DSM
           15053]
          Length = 873

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 113/556 (20%), Positives = 228/556 (41%), Gaps = 23/556 (4%)

Query: 401 FSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
             D +    A+  S  D ++  ++        P +    GL    +      W   IH +
Sbjct: 331 QYDKDHLYTALTASTDDYIFVGNMKTGVFMYPPAMVREFGLPGPVLENAAAFWGELIHPH 390

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D   F          R      E+R R    ++ W+  R + + +  G    + G   ++
Sbjct: 391 DESRFLESNQEIADGRTEYHNIEYRARNVRGEWIWLRCRGKMVRDVQGMPELFAGFITNL 450

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
             +++           D++TG+ NR  F   +   L            +M++D+D +K I
Sbjct: 451 GRREQI----------DHMTGLYNRFKFEGAVKKHLVSRTVS---HVGIMILDMDTFKDI 497

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND+   + GD++L     +I  +L       RL G+ FGI+L++             +++
Sbjct: 498 NDLYNRSFGDEILRMTAEKIRSVLPENASAYRLDGDEFGIVLLN-GEKKAYDKLYTDIQE 556

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
            +        R+   T S G+A +        +++K ++ A+  +K +G N +  F    
Sbjct: 557 ELERQKEWNGRKYHCTVSAGYAVYPEDADNYLDLIKYSDYALEESKRQGKNRLTVFTRDI 616

Query: 699 -SFRSDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              R+ R+ + E L   V        + Y P +      + G EAL +W+ P +GNIS  
Sbjct: 617 IFERTRRLKLTELLRECVGRGFAGFDVYYQPQVESATGRLYGAEALARWNCPDYGNISPV 676

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ + E+  +I     ++  +       WR     P   I IN++   ++ +++   ++
Sbjct: 677 EFIPLLEKSGLIVEFGRWVFRQAVLQCREWRK--RCPDFNISINLSYVQVIQDDVVGFVE 734

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +++S+T   P  + L  +ES +    +  +  +  L+  G+ + +DDFG+  S L  L  
Sbjct: 735 SVLSETGLKPQAVTLELTESYLAKEDKLVKDCMESLKDQGLLIAMDDFGSGYSSLKSLKT 794

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           IP + VK +     G T     ++ +R+I  +   +  T+  + +  E + + ++  G +
Sbjct: 795 IPANIVKIDREFTAGITSDAFNMSFIRAITELCHKVGKTVCLEGVETEEEYRMVSGSGLE 854

Query: 934 YIQDSHVASPLGFNSI 949
            IQ  +   P+     
Sbjct: 855 LIQGYYFGKPVKAEEF 870



 Score =  124 bits (311), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 95/284 (33%), Gaps = 35/284 (12%)

Query: 418 VWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           ++  D   D +      +    GL                H         +L   +  R 
Sbjct: 51  IFVTDAETDEIIYMNDVMKETFGLE---------------HPEGHP-CWQVLQKDMKARC 94

Query: 477 GRLQYEFRVRAADNQF-HWMII---RIRPMSNSN------GDILRYIGIANDITEQKKSL 526
           G  +    +   D +   W        R   N +      G          DIT +    
Sbjct: 95  GFCRIGELLGEKDRKLCIWDEKNVLSGRVYRNYDSLIELGGKTYHIQNSM-DITNRMTFS 153

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A  D LT + NR++  ++L  +L+ +  +      V + DI++ K +ND  G  
Sbjct: 154 DT----ANIDELTELWNRRAGKEKLRQLLEQAKKEKKTTV-VALFDINELKSVNDRFGHL 208

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  L      + E+L+  D+  RLSG+ F +   +E++          ++  +     
Sbjct: 209 EGDRFLRYAATAVREVLREKDLALRLSGDEFVVAFYAESSEE-ADANMHRIQDGLKEMEK 267

Query: 647 LLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +  S G    +     T ++++  A+  MY  K R  
Sbjct: 268 QYGLSYRMGFSYGLMEVYPEDSYTVTQIIAKADSQMYIQKRRYH 311


>gi|110636309|ref|YP_676517.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Mesorhizobium sp. BNC1]
 gi|110287293|gb|ABG65352.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Chelativorans sp. BNC1]
          Length = 730

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 211/436 (48%), Gaps = 13/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++S       AF D LTG+PNR     RL  IL            V+++D+D++K +N
Sbjct: 290 ELQESEGRARHLAFHDWLTGLPNRARLESRLDDILADL-LPGQAEAAVLLLDLDRFKNVN 348

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD V+    RR+ +++    ++ARL G+ F I++ S N     ++ +  +  +
Sbjct: 349 DTLGHRAGDQVIQQTARRLKDIVGNTGLVARLGGDEFAIVIASRNAVEAASELSDRVLAA 408

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
              P  L      +  SIG A+   + +   E+L+ A++A+Y AK +G    E F   + 
Sbjct: 409 FIPPFQLEGDTAHIGVSIGIATAPEAALHREEILRKADIALYEAKKQGRGRYELFSRTMD 468

Query: 699 SFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                R  ++ DL  A+    EL LVY P+       I G EAL++W+HP    +S    
Sbjct: 469 DTVKQRRQVEADLRKALATGKELELVYQPLYSAE-GRITGAEALLRWNHPVHQCVSPLFL 527

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  +I  I  ++L    R          +P  +I +N++   L D +       +
Sbjct: 528 VTIAEESGLIAQIGDWVLHEACRMAKR------VPVAWIAVNVSPVQLRDADFARRCLDI 581

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I     +P RI++  +E+VV+ NPE +  +LG LR  G+ + LDDFGT  S +SYL   P
Sbjct: 582 IRHHRIAPQRIQIEVTEAVVIENPELAGTILGALRSAGVRVALDDFGTGYSSMSYLRNYP 641

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +      E+  AI+ ++I MA+ ++  + A+ +  +     L ++GCD +
Sbjct: 642 LDRLKIDRFFVRALLEGEEGRAIIAAMIEMARALKLKVTAEGVETQEQRDLLVKLGCDEM 701

Query: 936 QDSHVASPLGFNSILK 951
           Q    + P+     + 
Sbjct: 702 QGYLFSRPIRAPHFIA 717


>gi|168463374|ref|ZP_02697291.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633743|gb|EDX52157.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 699

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 221/444 (49%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGTSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+   EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALARQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYDL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|54310587|ref|YP_131607.1| hipothetical sensory box/GGDEF family protein [Photobacterium
            profundum SS9]
 gi|46915030|emb|CAG21805.1| hipothetical sensory box/GGDEF family protein [Photobacterium
            profundum SS9]
          Length = 1052

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 111/581 (19%), Positives = 218/581 (37%), Gaps = 19/581 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + V +       +        L       I+   D      +     A +LG    
Sbjct: 476  LIEARDVTSRHQMEDKLREREVSYRLLYEQQPVILLAIDSQARIQSVNQFAADLLGYKKR 535

Query: 444  SMHGPIRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             M G            D           S +   +   + + R + A+ +  W+   IR 
Sbjct: 536  DMLGHKVTDFYL----DNAVLPQQFISSSRLNDDQIVWRRQLRYKCAEGKVVWVRETIRS 591

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
              +     L+ + +  DIT  ++  E +   A  D LTG+ NR  F  +L  +L  +   
Sbjct: 592  TQSK----LQLLLVGEDITSTRELEEKLEYQACHDYLTGLFNRNYFETQLENVLVEAREH 647

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +  R  +  ID+D++K IND  G   GD+ L  +   + E+      L+RL G+ F IIL
Sbjct: 648  E-TRHAMFYIDLDQFKVINDTAGHEAGDEALKQVALLLQEITPEHATLSRLGGDEFAIIL 706

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                    +      +               + + S+G      +  +  ++   A+ A 
Sbjct: 707  RHCTQHEAVTFGDEILHLLEGAEFFWQSTRFSFSCSLGIRLIDETAGSPQQVHAQADTAC 766

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-V 736
            Y AK  G N +  +        R  ++ +    +  A+      L    I  +       
Sbjct: 767  YAAKDEGRNRLHLYHPDDEELKRRELEMEYVNHIHKALAEQRFELHAQQIAPVASGSTKQ 826

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              E L++  +     +S   FM  AE   +   I+ ++++ +   + + ++      +  
Sbjct: 827  HYEILVRMRNSDGSMVSPGLFMPAAERYNIAHLIDRYVVKGVIEWLQANKEAVEKLEL-C 885

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             IN++ + + + +    +   I  +   PS++ L  +E+  +GN   +  L  +L+ +G 
Sbjct: 886  SINLSGQSMGNRDFVGFLIEQIRDSGLPPSKLCLEITETAAIGNMSEAIQLFTQLKNLGC 945

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
             + LDDFG+  S   YL  +P D +K +G  +    E     A++++I  +AK +    +
Sbjct: 946  LIALDDFGSGLSSFGYLKRMPVDIIKIDGMFVRDIAEDEMDFAMVKAINELAKKMGKRTV 1005

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ +  E  +  L  +G DY Q      P     ++  L +
Sbjct: 1006 AEFVENEAILMRLQSLGVDYAQGYLFGKPKPLAELVAELSQ 1046


>gi|312797000|ref|YP_004029922.1| sensor protein [Burkholderia rhizoxinica HKI 454]
 gi|312168775|emb|CBW75778.1| Sensor protein (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454]
          Length = 782

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 218/452 (48%), Gaps = 8/452 (1%)

Query: 509 ILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           IL + G+A   I +       +      D LTG+PNR   L  L T +   A     R  
Sbjct: 310 ILGFFGVATSLIRKLLGREREMTHLVEYDLLTGLPNRYQTLQILRTEVSQPANVG--RLA 367

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D +K +ND LG   GD VL   + R+ + +    ILAR+ G+ F +I+  ++  
Sbjct: 368 LLFIDLDNFKTVNDTLGHNAGDIVLQMTSARLAQTVDGNGILARIGGDEFVVIVKEDHVE 427

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            K    A A+  S   P ++      + ASIG A  +S   +  ++LK A+LAMY AK  
Sbjct: 428 PKAVQLAEAIAGSFMRPFDVRGSSFVLHASIGIALLSSPNESEIDLLKKADLAMYSAKDA 487

Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G    + +           +  ++ L +A+   +L+L Y P I L    I G EAL++W+
Sbjct: 488 GRGCYQFYSPQLAHRADHLMKWEQQLRVALAEGQLFLAYQPKIDLTRRCITGFEALLRWN 547

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G I++SEF+ IAE   ++  I  ++++   + +  W        + + INI++   
Sbjct: 548 HPQHGEITASEFITIAESTGLVVPIGEYVIDSACQQLAHWTSLGYDT-LSLAINISAVQF 606

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++   ++  + +      RI+L  +E+ +M  PE     +  L+++G+ + LDDFGT
Sbjct: 607 WRGDVFGTVERALRRHNLPARRIELEITETAMMEYPEIVSEKVAALKRLGVRIALDDFGT 666

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL     DT+K + S +      R    ++ +I+ +A+++  T++ +    E  
Sbjct: 667 GYSSLSYLNRFAVDTLKIDRSFVQAIPADRNVCVMVSAIVNLARSLGLTVVVEGTETEEQ 726

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I  L+ +G    Q    + P+  + +  LL+ 
Sbjct: 727 IAWLSGLGNIEAQGFLFSHPVPPDEVHALLER 758


>gi|218246197|ref|YP_002371568.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218166675|gb|ACK65412.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 715

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 111/578 (19%), Positives = 232/578 (40%), Gaps = 14/578 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             ++IQ +       + +F + E   + +   GD V   D         P    + G A 
Sbjct: 137 NLSLIQEIEEHRRTKEALFCEKELAQVTLKSIGDAVITTDAKGYVTYLNPIAEYLTGWAE 196

Query: 443 GSMHG-PIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIR 500
               G  +      ++   ++     +   +   R   L     + + D   + +     
Sbjct: 197 KEAQGVHLFEVFEIVNEFTKEIVENPIIQALDEVRIVNLAKNTILISRDGTEYPIDDSAA 256

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +SNG ++  + +  D+TE +     +   A  D+LTG+ NR  F  +L   L  +  
Sbjct: 257 PIQDSNGQVIGAVIVFRDVTEARSLNRQLSWQASHDSLTGLINRLGFEQKLEEALLSAKK 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    +  +D+D++K +ND  G A GD++L  +T  + + ++  D LARL G+ F  +
Sbjct: 317 -ENQHHVLCYLDLDQFKVVNDTCGHAAGDELLRQITHLLQQRVRTSDTLARLGGDEFAFL 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +                        +  ++  SIG      +    + +L  A+ A
Sbjct: 376 LHQCSLEKATEIAETFRELIEKFRFCWNNKTFSIGVSIGVVEIDKNSKDKNSVLALADAA 435

Query: 681 MYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EI 735
            Y AK +G N V+ ++V +     +         +  A+E++   L    I  L    + 
Sbjct: 436 CYAAKGKGRNCVQVYQVDNHELLKQRKERQWVVQINQALEDNRFRLYSQKITPLNSHLKP 495

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +  E L++        +S   F+  AE   ++ AI+ +++    +   ++  Q      F
Sbjct: 496 IYYEILLRLLDDNGQLVSPGNFLPAAERYGLMPAIDRWVISTFLKKYDNYYHQTVNKSDF 555

Query: 796 ----ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
                 IN++   +   +  E ++  ++ +      +    +E+  + N +++  L+  L
Sbjct: 556 EQNLYAINLSGASINSEQFLEFLKEQLTNSKIPLKNLCFEITETTAIANFDQAIELINEL 615

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +++G    +DDFG   +   YL + P + +K +GS +     +E   AI+ S   +   +
Sbjct: 616 QQLGCCFAIDDFGHGMNSFDYLKHFPVNYLKIDGSFVRNLVQSEVDQAIVESFNRIGHIM 675

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               IA+ +     + ++  +G DY Q   +A P+ F 
Sbjct: 676 NFQTIAEFVENAAILSKIEAIGLDYAQGYVIAKPVPFE 713


>gi|288575107|ref|ZP_06393464.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570848|gb|EFC92405.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 586

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/594 (22%), Positives = 267/594 (44%), Gaps = 21/594 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +V +V  +    I+  +     ++      +R    +    D V   D     V      
Sbjct: 7   IVSLVRSLFEKAIKKAIPAETVNRKDRISLKRLFQTL---PDGVVLLDPNEKVVDVNDAF 63

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             I   +   + G   + +  +  +  D    I    +  ++  L+   R+R  D +   
Sbjct: 64  LGIFRFSRKDLLGKKLDEM-ILPPDRVDEGLAINRRILEDKKVELEGT-RLR-GDGEIIK 120

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           ++I   P+   +  ++ + GI  D+T+Q +    +   AF+D L  +PNR SF+      
Sbjct: 121 VMIFGCPI-EVDRKLVGFYGIYRDVTKQAEVEAKVRRLAFRDELCDLPNRVSFVRE---- 175

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                       +++ ID+D++K +ND LG A+GD++L  +  RI   L    +++RL G
Sbjct: 176 -GRFRVKRGEPFSILYIDLDRFKNVNDTLGHAIGDELLRCVADRISRALDPSSMVSRLGG 234

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEM 673
           + FG+++ S+ +         ++   +  P  L ER  I++ AS+G + +    IT  ++
Sbjct: 235 DEFGVMIYSD-DYCDAYSVGKSILDCMDGPFKLSERAHISIGASVGISVYPDHGITWEDL 293

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-IKEDLCLAVENS-ELYLVYHPIIRLM 731
             +A++AMY AK  G   V    V        + ++  L  ++     L L Y P + + 
Sbjct: 294 FGHADIAMYEAKKSGRKIVFFDDVMGVSFRERIGMERRLADSLARESGLSLAYQPKVDMS 353

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             E++G EAL +W   +        F+  AEE  +I  +  +++E+  R    W  +   
Sbjct: 354 SGEVLGFEALCRWKDGEEDRSP-ELFIPAAEETGLIVDLGRWVMEKACRRGALWLKEGLR 412

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P  + +NI++K +  ++    +  ++ +T + P  ++L  +ES +M + +RS  +L  L
Sbjct: 413 VP--LAVNISAKQVQQDDFVLMVDRILEETGFPPELLELELTESTLMKDLDRSCSMLESL 470

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNI 909
           +++G+SL +DDFGT  S L+Y+     D +K + S M    +     AI++S++ +A   
Sbjct: 471 KELGVSLAIDDFGTGYSSLAYMARFDVDILKIDRSFMPGKEAPPLNEAIVKSVVALADAR 530

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              +IA+ +  E     L R+GC   Q    + P+   ++  L    F  ++ +
Sbjct: 531 GLRVIAEGVETEEQRDLLLRIGCVSAQGFLYSRPVPEEAVADLFSRGFGSLQPS 584


>gi|119489827|ref|ZP_01622582.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119454255|gb|EAW35406.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 214/441 (48%), Gaps = 6/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     + +   A  D+LT +PNR   + RL  +++ +  D      +M ID+D +K IN
Sbjct: 180 ELLVRKQKLEFMAIHDSLTSLPNRDWLMSRLDNLINRTKVDSGFHFGLMYIDLDHFKVIN 239

Query: 581 DVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           + +G  VGD +L  + + +      F   + RL G+ F I+L +  +  + +  A  +  
Sbjct: 240 ESMGHIVGDGLLNQVAQLLLKTCANFGGSVIRLGGDEFVILLENVCHIERASSLAETILN 299

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
            +  P+   + +  + ASIG    +      +++L++A+LAMY AK  G           
Sbjct: 300 QLKSPLVWEDYQYYINASIGITHSSFGYQEVADVLRDADLAMYSAKQAGRGCYRVLTTAL 359

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               + R+ +++ L + +EN E  L Y PI+ L   E+ G EAL++W HP+ G IS   F
Sbjct: 360 QKQAALRLQLEQKLRIGIENQEFCLYYQPIVSLTTGELAGFEALVRWQHPEEGIISPGLF 419

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  +I  +  ++L         W+ +      + + INI++  L   +    ++ 
Sbjct: 420 IPIAEETGLIYELGDWILNSAISQWKEWQQKFPCCLDLVLHINISAVQLSQYKFFTNLEK 479

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +     S +KL  +ES ++    ++  LL R + +G+ L +DDFGT  S LS+L  +
Sbjct: 480 MLIEKNVERSGLKLEITESCLISKQVKTSRLLDRAKAMGLQLCIDDFGTGYSCLSHLREL 539

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D++K + S +    +K     ++R+II +A N+   ++A+ I      + L  +GC++
Sbjct: 540 PLDSLKIDRSFVMNLEDKDHDATVVRAIIALAHNLGMELVAEGIETSEQWQHLRMLGCEW 599

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A P+        ++ 
Sbjct: 600 GQGYLFAKPMTVQHAENAIQS 620


>gi|172062933|ref|YP_001810584.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|171995450|gb|ACB66368.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 814

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 132/534 (24%), Positives = 245/534 (45%), Gaps = 9/534 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  + DIA   G    ++          +  +D+      L   +      +  EFR+R 
Sbjct: 271 IYISHDIAR-FGHDRATLLASPVWANELVAQDDQARVDAALARILDKDTEGVSIEFRLRT 329

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D  +  +  R  P+ + +G ++   GI  DI E+K + E I   A  D LTG+ NR  F
Sbjct: 330 GDGAYRCVENRYVPVRDKDGRLIEVEGIIIDIAERKAAEEKIARLAHTDALTGLANRAGF 389

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L R+      +A    +   ++ + +D+++ +ND LG  VGD +L  +  R+G  ++  D
Sbjct: 390 LARVRHAFA-AARHGTMPFAILFVALDRFRPVNDRLGYPVGDLLLREVAERLGNCVQESD 448

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARL G+ F ++             A  ++ ++A P  L   ++ ++ SIG  ++    
Sbjct: 449 LVARLGGDAFAVVQGEMIEPADAGALAAKLQAALAAPYLLDGNDVRISVSIGIRAYVQGD 508

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYH 725
             +  ML  A+LA++ AKH GGN              +RV + +DL  A++  EL L Y 
Sbjct: 509 SGADAMLMQADLALHRAKHHGGNRYRFHSDELDHEVRERVALADDLKGAMDRGELELQYQ 568

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    I+G+E L++W HP  G I+   F+ IAE    + A+  ++L++  R + +W
Sbjct: 569 PEVELSSGNILGMEGLVRWHHPTRGLIAPGVFIPIAEREGSMAALGRWVLDQACRQMRTW 628

Query: 786 RDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           RD+  + P+ I IN++  +L   +     +    +K   +PS ++   +E+ +       
Sbjct: 629 RDE-GVAPLMIAINLSLFELRSAQTFVRDVAEAAAKWRLAPSDLEFDVTEATLARLSWAQ 687

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
             +L +L  +G  L +DDFG+  +   Y+     + +K   SL+    S  +  A + +I
Sbjct: 688 SDILPQLHALGAKLAIDDFGSNYASFEYVQAYRVNHLKIARSLIHRSTSDPESAATIHAI 747

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTR-MGCDYIQDSHVASPLGFNSILKLLKE 955
           +  A +I   +IA+ +  E     L         Q    +  +G     +LL++
Sbjct: 748 VTFAHSIGIGVIAQGVETEQQRALLAATNRATSAQGFRFSEAVGAARASELLRQ 801


>gi|294141096|ref|YP_003557074.1| sensory box protein [Shewanella violacea DSS12]
 gi|293327565|dbj|BAJ02296.1| sensory box protein [Shewanella violacea DSS12]
          Length = 730

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/618 (20%), Positives = 257/618 (41%), Gaps = 31/618 (5%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  + + + I   L+  +              +   T +   LA    +   + + ER 
Sbjct: 123 IMSSLDVAIRINGHLEGILYLERTSIAPWSDSEIHIATHVADQLALTLATHNAYENDERL 182

Query: 408 SLAVLG---SGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           +L +     S  +    ++  D +         + G+    + G     L +I       
Sbjct: 183 TLLLSADEESEQVSMLINLKSDLIEYVNQAHEWLSGMPKRQVIGHSFKQLDFI-----KQ 237

Query: 464 FRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +       +         + E  V  +D + +W+   ++      G+    +  A+DI++
Sbjct: 238 YPQQAKGILEQVSMGAVAKGESLVVRSDGRQYWLRYSVKQFITERGNHYALV-KADDISD 296

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K+    +   A++  LTG+ NR  F   L                +++ID+  +K+ ND
Sbjct: 297 EKQYQAKLERLAWRCGLTGLYNRSYFNKELEHC---------KSGQLILIDLCGFKRFND 347

Query: 582 VLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
             G   GD++L+ + RR+     +   + LAR+  + F II+ ++N    +      +  
Sbjct: 348 TYGHQNGDELLIEIARRLKHFANVNKTEHLARVGSDEFAIIIPTQNQVD-MDYITARLYS 406

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
            +  P+++   +I    ++       S   S   L  A++A+ +AK + G+ ++ F  + 
Sbjct: 407 QLTQPVHIGREQIQAKPALAIVDI-ESVEDSFVPLACADIALQYAKTKQGDKIQVFNNAL 465

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +   +   I+ DL  A+   E  L Y P+  L     +G EALI+W HPK G +    F
Sbjct: 466 LNTFKEDAQIERDLQTALRGREFELYYQPLKDLKTRTYIGAEALIRWHHPKKGVLYPGAF 525

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I AI  ++LE   R +  W+       I + +N++++      L + +  L
Sbjct: 526 IDIAEQTGLINAIGTWVLEAACRQLNLWQHH--QIDISMHVNVSARQFFSGNLFDQVWNL 583

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+    P  + L  +E+ +M + + +  L   L ++G+ L +DDFGT  S + YL   P
Sbjct: 584 VSRYRLQPGSLILEITETELMEDIDYATNLCTELSELGVGLAIDDFGTGYSSMRYLKQFP 643

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S ++    + +   I+ +II MA  +  ++ A+ +  +     L+   C   
Sbjct: 644 ISKLKIDRSFISDLTVSRESREIVSAIIAMASALNISLTAEGVETKEQEDFLSEHKCHQA 703

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    +  L  +   + L
Sbjct: 704 QGFLYSPALRESEFSQFL 721


>gi|254449128|ref|ZP_05062579.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
 gi|198261242|gb|EDY85536.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [gamma
           proteobacterium HTCC5015]
          Length = 646

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 224/441 (50%), Gaps = 6/441 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-NLRPTVMVIDIDKYKKIN 580
            +   + +  + F D +TG+PNRQ+F++RL  +   SA    N    V++ D+D +K IN
Sbjct: 194 HRNLEQKLQEHTFYDQVTGLPNRQNFIERLEYLFKSSAEGSLNGPFAVLLTDLDSFKVIN 253

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG   G+ +L S+  R+   +   D++AR+ G+ +G+I+ + ++  +    A  + + 
Sbjct: 254 ESLGHQAGNQLLKSVGHRLNRCVGPNDLVARMGGDEYGLIIENIDDVTEAIQTAKNIHEQ 313

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
              P  +    ++ + SIG A       T+ E++++A++AM  AK  G  H E F   + 
Sbjct: 314 FQEPYMIQGHRVSESISIGVAISQGQNQTAEELIRDADIAMSRAKQNGRGHYELFNVEMH 373

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++  +   +E  E +  YHPII +     V  EAL++W+HP+ G ++ + F+
Sbjct: 374 QEAVNRIELENSIRHGLERREFFNRYHPIIDVESGLTVSAEALVRWNHPERGELAPNHFI 433

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE+ ++K ++  +L++   D+  W+        + + +N +++        E +   
Sbjct: 434 PLAEEIGLVKPLDQQVLDKALADLCVWKKHFPEHSGLTVNVNHSAQHFHGRPSLEVILNS 493

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         +KL  +ES ++ N   +  L G LRK+G+ L +DDFGT  S LSYL  + 
Sbjct: 494 LEAHSLRGRDLKLELTESSILKNDLVASALFGELRKMGVHLCMDDFGTGFSSLSYLHKLS 553

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +     +++   I+ SII M  ++   + A+ +  +  +  L  MGC Y 
Sbjct: 554 FDMLKIDMSFVAEMLYSDEARKIVHSIIEMGNHLGLGVTAEGVETQEQLDILKSMGCRYA 613

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + PL    I   +++R
Sbjct: 614 QGYLFSKPLLAEEIPDFIQKR 634


>gi|119475298|ref|ZP_01615651.1| EAL domain protein [marine gamma proteobacterium HTCC2143]
 gi|119451501|gb|EAW32734.1| EAL domain protein [marine gamma proteobacterium HTCC2143]
          Length = 597

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 225/440 (51%), Gaps = 6/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + + I      D LTGI NR  F   +   ++L+ T   +   +++I++D +K+IN
Sbjct: 155 EKNATDKKISQLNLYDPLTGIANRLMFQRNMARAIELAKTQQ-ISLALLLINLDDFKRIN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   GD ++  + +R+   ++  D +AR+ G+ F ++L     +  IA  A  +   
Sbjct: 214 QSFGTGAGDRLVTMMAQRLARCVRQSDAVARIGGDEFALVLEDSQTNEDIALVAQKVIDV 273

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           ++ P  L  + + V+ SIG A++  S  +   ++K A +AM  AK + G+    +     
Sbjct: 274 LSAPCTLNGQAVIVSCSIGVATYPDSGDSVDGLIKYANMAMLEAKRQRGSQCCFYHEETS 333

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ +++D+ LA+  +E  L Y P + +   +  G+EALI+W HP  G +S  EF+
Sbjct: 334 KAAVRRMNMEKDMRLALRRNEFELFYQPRVEIASGDAAGMEALIRWRHPVHGLVSPDEFI 393

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++L++  +D+    DQ+    + + +N++ K L D+   +    +I
Sbjct: 394 PMAEETGLIVPIGYWVLQQACKDM-LILDQSGHQNLEVAVNLSFKQLQDDMFVDTATRII 452

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K+    SR++   +E+ +M N +++   +  L K+G++ +LDDFGT  S  +++  +P 
Sbjct: 453 QKSGIDASRLEFELTETAIMSNYQQACDGMMALSKLGVTFSLDDFGTGFSSFAHIQQLPI 512

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +     +     I++++I +A ++   ++A+       ++ L +  CD IQ
Sbjct: 513 SALKVDRSFIENVVKSNDDGIIVKAMINLAHSLRLHVVAEGAETLEQVQFLWQNHCDQIQ 572

Query: 937 DSHVASPLGFNSILKLLKER 956
             + +  +  N  ++L+  R
Sbjct: 573 GFYFSEAVTVNQFIELMDRR 592


>gi|254000014|ref|YP_003052077.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253986693|gb|ACT51550.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylovorus sp. SIP3-4]
          Length = 782

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 228/456 (50%), Gaps = 10/456 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G + R  G   D    ++  + I   A+ D LTG+PNR SFL  L       A D  
Sbjct: 324 DELGKLSRAFGSMVDAIASRE--QSITRLAYWDELTGLPNRASFLRELGLA-LQQAQDQQ 380

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILI 622
               V+V++++ +K+IN VLG A  DD+L S+ +R+   + +  D++ARL G+ F ++L 
Sbjct: 381 EHLAVLVMNLNHFKQINKVLGHAAADDLLRSVAQRLQSSIRQESDLVARLGGDEFALLLP 440

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                      A  + + +  PIN+  + + ++  IG A +        ++L NAE+AM+
Sbjct: 441 R-TGIANATHVANMLLQKLEAPINIANQSVDISMGIGIACYPEHASAQEKLLGNAEMAMH 499

Query: 683 HAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  + G  +            + +  +L  A+  +EL L   P I L + +I  +EAL
Sbjct: 500 VAKAKQSGAVLFDPAFDISSQGNLSLASELRQAIATNELALYVQPKIDLQNGKISAVEAL 559

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G +   +F+  AE+  +I  I+L++L   AR  ++WR      P  I +N++
Sbjct: 560 IRWRHPQKGLMFPDQFIPFAEQSGLISLISLWVLAEAARVEVAWRKLGIDAP--IAVNLS 617

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++DL+D +L   +  L      +   I L  +ES +M +P+R++  L RL  +G+ L++D
Sbjct: 618 TRDLIDQDLPHKILTLHQDAGLALGGITLEITESSMMDDPQRAQQTLERLSDMGLQLSID 677

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P   +K + S +      E    I+RS I +  N+   ++A+ I 
Sbjct: 678 DFGTGYSSLAYLKRLPVSELKIDKSFVLKMEEDENDRKIVRSTIDLGHNLNLKVVAEGIE 737

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  L  MGCD+ Q  H++ P+        L+ 
Sbjct: 738 SRAAWDLLASMGCDFGQGYHISKPMPAADFPAWLQR 773


>gi|167035266|ref|YP_001670497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166861754|gb|ABZ00162.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 754

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 225/442 (50%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L     ++N R  VM +DID +K+
Sbjct: 276 LSQLDQARASLQQAAHYDALTNLVNRRGFNQVFAERLVEHQANEN-RLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +   I    +  D++ARL G+ F  ++ S N+  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIANHIKAATRSQDLVARLGGDEF-CVVTSLNSRDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  PI+L  R + +T SIG + +     T+ E+LK+A+LA+Y +K  G N +  F  S
Sbjct: 394 QRMKDPIDLGGRRMVMTTSIGVSIFPDDGSTAEELLKHADLALYQSKDNGRNSLNFFNDS 453

Query: 699 ---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                     + +E     +E   L + Y PI  L   ++  LEAL++W HP+ G +   
Sbjct: 454 LKARASIALQLEEELRLALLEERGLCVHYQPIFDLRSGQVAKLEALLRWQHPQHGLLGPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L++L     D+   +       + + +N ++  L  +EL   ++
Sbjct: 514 RFIGIAEANGLIIDLDLWVLRHACADLAYLQRHGYGE-LKVTVNCSAVTLSHDELPNEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +     +P +++L  +E+ +MG+ +R+  LL R+R +G++L++DDFGT  S L+YL  
Sbjct: 573 KALFHAALAPRQLELEVTENALMGDIQRTVSLLKRVRALGVALSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + +     ++K   I+++II MA  +   ++++ +        L   GCD
Sbjct: 633 LPLDVLKIDRTFLQDVPGSQKDREIVQAIIIMAHTLHLQVVSEGVETAEQQAFLESHGCD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   +  P+    +  LL+ 
Sbjct: 693 YLQGYLLGRPVPLAELRPLLER 714


>gi|332305205|ref|YP_004433056.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172534|gb|AEE21788.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 590

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 228/457 (49%), Gaps = 25/457 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T+Q +  +     AF D+LTG+PNRQ  +  L   L ++  + N +  ++ ID+D++K+
Sbjct: 134 VTQQHELHQ----LAFYDSLTGLPNRQYLMQDLQRFLAMAERN-NYQAAMLFIDLDRFKR 188

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILAR--------------LSGNRFGIILISE 624
           IND +G + GD +L  +  R+   L+  D  AR                G+ F I L   
Sbjct: 189 INDTMGHSYGDKLLRKVAHRLQANLRDSDTFARVGSEQSSQEPQLSSFGGDEFTIFLSRL 248

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           N+  +    A  + +S + P  L + E+ VT SIG + + +    +  +LKNA+ AMY A
Sbjct: 249 NDPNEAMLVAERVIRSFSTPFQLEQFEVVVTPSIGISMFPNDGDNAETLLKNADTAMYFA 308

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G    + ++ S       R+ +++DL  A+++ E+   Y P I      IVG+EAL+
Sbjct: 309 KQSGRCCYKFYQDSMNAKAAARLQLEQDLRRALKSDEIVPFYQPQICAQSGRIVGVEALV 368

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   K G I   EF+ IAEE  +I  +   +LER       W D+ N  P+ + IN+++
Sbjct: 369 RWLPAKGGIIPPDEFIPIAEETGLINELGRLVLERGCYQAKQWFDEGN--PVRMAINVSA 426

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                 +  + +  ++ +   +P  ++L  +ESV+M + E +   L  L+ +G+SL +DD
Sbjct: 427 HQFRQLDFTQVVADVLQQCGLAPELLELELTESVIMSDAEENIARLIELKALGVSLAVDD 486

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S M         +AI+ +I+ +A++++  +IA+ I  
Sbjct: 487 FGTGYSSLSYLKRFPIDILKIDRSFMCDVNSAPDDLAIVEAILALAESLKLGVIAEGIEY 546

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              I  L       +Q    + P+    I  LL + F
Sbjct: 547 GSQIAILKNTNQLLLQGYLFSRPVAAEYISPLLNQDF 583


>gi|56415314|ref|YP_152389.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197364244|ref|YP_002143881.1| hypothetical protein SSPA3040 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129571|gb|AAV79077.1| putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197095721|emb|CAR61291.1| putative membrane domain involved in signal transduction;
           Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 699

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 222/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGTSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLAQH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|194447535|ref|YP_002047416.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205359457|ref|ZP_02670140.2| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194405839|gb|ACF66058.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336035|gb|EDZ22799.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 699

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|120554941|ref|YP_959292.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120324790|gb|ABM19105.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 692

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 213/439 (48%), Gaps = 8/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +++ + +   A  D LTG+P+R +F++ L   ++ +    +    +MV  ID +K +N
Sbjct: 246 KHREAEDRVTRLARYDTLTGLPSRDAFMEDLQGAIERAQE-GHSSIALMVCGIDDFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +  G   GD +L ++  R+   L      +ARL  ++F I+     +  + A+ A  +  
Sbjct: 305 EQCGFRTGDTILQTVASRLTANLSSDRFNVARLGSDQFVIVEKHLRDGFQAAETAEKVLA 364

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           +I  PIN     I++TA++G + + S    +  +L++AE  M  AK  G NH + +   +
Sbjct: 365 TIGSPINSGNHRISMTATLGISLFPSDADQADRLLQSAEQTMALAKQTGHNHFQFYVASI 424

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +R  +++DL  A+ N E +LVY P I L    ++G EAL++W+HP+ G I    F
Sbjct: 425 DKEIRERKQMEKDLAQALANHEFHLVYQPQINLETRRVIGAEALLRWEHPEHGMIPPDLF 484

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    I  I  ++L++       W  +     + I +N+++  L    + + +   
Sbjct: 485 IPVAEANGSIVEIGQWVLDQACWQAARWASEG--THLRIAVNLSAVQLRQESIVDDILNT 542

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +      R++L  +E+  M N   +   L RL + GIS+ +DDFGT  S L+YL  +P
Sbjct: 543 LKRHNIPAGRLELEVTETSFMTNLTDAVAKLHRLHRAGISIAVDDFGTGYSSLTYLKQMP 602

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +      E+   I  +II + K++  T++A+ +        L++ GC   
Sbjct: 603 VQHLKIDKQFIRDLLINEEDTRIANTIIDLGKSLNLTVVAEGVETAEQEYYLSQRGCALA 662

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + PL        ++
Sbjct: 663 QGYFFSKPLLPRDFANFVQ 681


>gi|300865031|ref|ZP_07109858.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Oscillatoria sp. PCC 6506]
 gi|300336968|emb|CBN55008.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Oscillatoria sp. PCC 6506]
          Length = 716

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 229/576 (39%), Gaps = 18/576 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +I  +          F++ E   + +   GD V   D   +     P    + G  +
Sbjct: 141 NLRLIAEIEENQRLKDIFFAEKELAQVTLQSIGDAVITTDDRGNIKYFNPVAEKLTGWKA 200

Query: 443 GSMHGPIRNWLPYI------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
               G   + +  I         D      I  + +      L     + A D + + + 
Sbjct: 201 EETEGLPLSEVFLIINEVTRKPADNP----IHKALLEGEVVGLANHTILIARDGKEYAIE 256

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               P+ +  G I+  I + +D+T+ +     +   A  D LTG+ NR+ F   L   + 
Sbjct: 257 DSAAPIRDRQGQIIGAIIVFHDVTQARYLTRQLSWEASHDALTGLTNRRGFEHYLVDAIA 316

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            S  D N    +  +D+D++K +ND +G   GD++L  +T  + + ++  DILARL G+ 
Sbjct: 317 -SIQDSNQHHVLCYLDLDQFKVVNDTVGHIAGDELLRQITTLLQQGIRANDILARLGGDE 375

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG++L     S                      +   +  SIG  +   +     E+L  
Sbjct: 376 FGLLLTHCPLSQATQIAENLKELVHQFRFIWDNKTFIIGVSIGVVAIDQNNQNLMEILGA 435

Query: 677 AELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           A+ A Y AK +G N +  +R+       +     +   +  A+E +   L    II +  
Sbjct: 436 ADAACYAAKAKGRNCIHVYRLDDSELIRQRGERQLIAKISQALETNRFCLYSQKIISITS 495

Query: 733 E-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           +  +   E L++        +S + F+  AE   +I  I+ +++E    +       A +
Sbjct: 496 QPLVEHYEILLRMLDENGELVSPNAFIPAAERYGLIADIDYWVIETFFSNHQKLSRPALL 555

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
                 IN++   + +N+    +     +    P  I    +E+  + N +++R  +  +
Sbjct: 556 ANGLYTINLSGASICNNQFMRFLIEQFPRYQILPQTICFEITETAAIANFDQARNFINEI 615

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
           +K+G    LDDFG+  S  +YL  +P D +K +G  +   T      AI+     +A  +
Sbjct: 616 KKLGCRFALDDFGSGLSSFAYLMNLPVDYLKIDGVFVKNITHNLISQAIVEGFNRIAHAM 675

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
               +A+ +  E  +++L  +G DY Q   ++ PL 
Sbjct: 676 NIETVAEFVEDEAILEKLREIGVDYAQGYGISRPLP 711


>gi|325972474|ref|YP_004248665.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
 gi|324027712|gb|ADY14471.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
          Length = 796

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/792 (20%), Positives = 337/792 (42%), Gaps = 36/792 (4%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
           T    ++     ++++   I  + N     +     A VV   +      +S + +  S 
Sbjct: 4   TSLFAMLFITVCIVSLVSGILVVQNDRKSAVHQAFFALVVSLILWTLGLTMSTIASSESI 63

Query: 249 ELLIWRACS--EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
               +R  +     L + L++F+    +    +  + +I    +  +  L  +  Y   +
Sbjct: 64  AQWGYRISAFGWGNLYAILLLFILRLTNRPYRNYYLLFIPTVLMILVFGL-PLGLYTYDL 122

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI--------FIWFIGLWMAI 358
             +     L+++  ++ Y    + +     +V L+ +W            ++ + +   +
Sbjct: 123 KFTRFGYALSTVDTFWDYIFYAYYIGYTIASVYLLFSWKTTREQKQRKQILYSLVIAFLV 182

Query: 359 TKRLDNDIIQPALVGGLVL-IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
               D  +         +  I++++   +    L +            R ++  +G    
Sbjct: 183 GSVTDVLLPALGFELPQLGPIILVVPIVLFSQALRSRNPVVVGLDSNSRYTITFIGVALY 242

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-----NDRDNFRTILDSFV 472
           V    +V+ R+     +  +  L   +  G I     +I I       R      L   V
Sbjct: 243 VL-LSVVQVRLAVDASLLGLFNLQESTFRGIITQMQMFISIYLVLRAKRTGVIAAL--LV 299

Query: 473 GYRRGRLQYEFRVRAADN-------QFHWMIIRIRPMSNSNGDILRYIGIA-NDITEQKK 524
                     F +R            +  +++ +  +         YI    +   E ++
Sbjct: 300 NGANLVSSLLFLLRTNSAAPIPGIISYIGVLLLVYLIMEYEQRSEWYISHMDSQRVELEQ 359

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           S E +   AF D+LT +PNR  F++++   +  S+ +  L   ++ +D D +K IND  G
Sbjct: 360 SQEKLYTMAFYDSLTNLPNRDYFIEQVDLAIAQSSKNGQL-IGLLFLDFDSFKSINDTAG 418

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD VL  +   +  +L   D++AR  G+ F + +     +  I      + K++  P
Sbjct: 419 HATGDLVLKKIAHVLASVLDKDDVIARFGGDEFLMQIKRRKETD-ILQVTRQIMKALKHP 477

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSFRS 702
           I +   E  + ASIG + + +    +  ++ NA++AMY AK +G N        +    +
Sbjct: 478 IVIETEEYFLPASIGVSMYPTDGNDAETLIMNADIAMYSAKAKGKNQVVYCDEEMKEQTT 537

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ +   L  A++  ELY++Y P +     ++ G EAL++W++P++G I    F+ +AE
Sbjct: 538 KRLRLTNSLYRALDKGELYVMYQPQVDTKTRKVCGFEALVRWNNPEYGLIPPLSFIPLAE 597

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I+ I LF+LE     ++S+  Q     + + +N++   L D+ + E +Q ++ +T 
Sbjct: 598 QTGLIRPIGLFVLEEACNQLVSFTSQF-TERLTMSVNLSLIQLKDSRIVEKIQEILVRTD 656

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S +++  +ES    +       L  L+++G+S+ +DDFGT  S  S L   P D +K
Sbjct: 657 VDVSCVQIEITESANFLDEPILLQRLIELKELGLSIAIDDFGTGHSSFSRLKTYPIDQLK 716

Query: 883 FNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +   + G    +EK +A+++SII +AKN+    +A+ +  E  ++ L+   CD +Q  +
Sbjct: 717 IDIEFVRGISTGSEKDMALIKSIIQIAKNLGIEALAEGVETEEQLQYLSEHDCDKLQGYY 776

Query: 940 VASPLGFNSILK 951
            + PL   +I++
Sbjct: 777 FSKPLEVEAIIQ 788


>gi|224371248|ref|YP_002605412.1| hypothetical protein HRM2_41920 [Desulfobacterium autotrophicum
           HRM2]
 gi|223693965|gb|ACN17248.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 938

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 112/560 (20%), Positives = 236/560 (42%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           SQ +  + E     V  +  ++       + +        +  +   ++ G   ++  + 
Sbjct: 380 SQDLKREKEFIERLVQTAPILIMTQTCSGEILFVNNAALVLHEVEKEALVGH--SFDDFF 437

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  +   ++          +QY+  + ++    H +      +          + I 
Sbjct: 438 SAENHHHHDQLMALRQEKEIKSIQYDADMISSSGITHAISWFHSTLYPQEETAPLILTIG 497

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT++K++ E ++  A  D+LT + N + F      I+D +   D  +  +  +D+D++
Sbjct: 498 LDITDRKRAEEQMVWLATHDHLTNLSNLRHFNHEFERIIDQAKRYDE-QVALFYLDLDQF 556

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD VL ++   +  + +  D++ R+ G+ F +++ +      +   A  
Sbjct: 557 KIINDTQGHHRGDVVLQTVAMTLKRITRKSDLICRIGGDEFTLLMPNATGK-AVLTLAKK 615

Query: 637 MRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           + +++   P+  +     ++ASIG A +     +  ++L NA+LAMYHAK  G      +
Sbjct: 616 INQALGKTPVEGMGHNFKISASIGIAIFPQHGTSIHDLLSNADLAMYHAKKSGYGQFHVY 675

Query: 696 RVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                    +      K  L  A+EN    L + PI+ L  + I   E LI+    +   
Sbjct: 676 SAKQQYQVHLTQRMYWKNVLEEAIENDRFVLYFQPILDLKTDRISHYECLIRLISEQGSV 735

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   EF+  AE L +I  I+  ++ +     + +  +     + + IN++ + L D  + 
Sbjct: 736 IPPGEFIEYAEVLGLIGHIDRIVMAKAIAQHLEFNKRG--MTVGLSINLSGRSLNDRTVS 793

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++ L++    +P +I    +E+  + N   +R L+  ++++G    +DDFG   S   
Sbjct: 794 HEIRRLLTLPHVNPEKIIFEITETAAISNFPSARTLINEVKELGCRFAIDDFGVGFSSFQ 853

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +  D VK +GS +    ++      ++S+  +A  +    IA+ +  E  +  L  
Sbjct: 854 YLKDLAVDYVKIDGSFIRKIDTSHGDRIFVKSMSEIAHALGKKTIAEFVENEAIVSVLRE 913

Query: 930 MGCDYIQDSHVASPLGFNSI 949
              DY Q  H+  P     +
Sbjct: 914 YEIDYAQGYHIGKPQPIEHL 933


>gi|330992596|ref|ZP_08316544.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
 gi|329760795|gb|EGG77291.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
          Length = 797

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 113/438 (25%), Positives = 211/438 (48%), Gaps = 9/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  +   +   A  D+LTG+ NR +    +  ++       N    + ++DID+++ IN
Sbjct: 295 EQHATKTHMTQLARYDSLTGLLNRGALHRVMEEMIAQP---GNRTLAIFMLDIDRFRDIN 351

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV +  RI  + +   +L+R  G+ F +++   +   +I + A ++  +
Sbjct: 352 DALGHVHADQFLVEIAARIRSIARDDYVLSRSGGDEFVLVVPDCDGP-RIEEIARSLLDT 410

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P+ + +  ++++ SIG +++ ++   S  +L +A+ AM  AK  G        +   
Sbjct: 411 IGRPLQIGQNTLSISCSIGISTFPANGPDSESLLSHADTAMRQAKEDGRGIYRFANLEKN 470

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 471 QVAQDRLVLGSALRDSLAQGMLQLHYQPQVRTHTLELSGVEALSRWHHPTLGNIYPSRFI 530

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R I+ W       P  + +N+++    +  L E + AL+
Sbjct: 531 AVAEETGQIEAIGRWSLLEACRQIVKWDGDGVYVP-TVAVNLSAVHFRNRALPEHIAALL 589

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 PSR+ +  +ESV+M +   +  +L  +R +G  L++DDFGT  S LS L  +P 
Sbjct: 590 KDHNLKPSRLTVEITESVMMDSSSDTEEVLQSIRNLGCGLSMDDFGTGYSSLSRLTRLPL 649

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L ++ CD +Q
Sbjct: 650 TEIKIDRSFINDFEYDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEQLNCDVMQ 709

Query: 937 DSHVASPLGFNSILKLLK 954
               A PL    + + ++
Sbjct: 710 GYLFAKPLAPRDLEEWVR 727



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 7/123 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDR 461
           E    A+  + D         + +      A++ G+    + G   + L      H +DR
Sbjct: 19  EMLLPALEQAIDATVIIGQDNEIIFYNQAAASLWGIPREEVIGRNVDCLVPVRLRHEHDR 78

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIGIANDI 519
             +          R      E     AD ++    + +  +    G    + Y+G+  ++
Sbjct: 79  --YIDRNRETGHNRIVGTSREVEFTRADGEYICGELSLSKVEIGQGAKRQIYYMGVMKNV 136

Query: 520 TEQ 522
           T++
Sbjct: 137 TDE 139


>gi|269959959|ref|ZP_06174336.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835258|gb|EEZ89340.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 763

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 215/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + +L  A  D+LT +PNR+     + + L  S    +   T+M IDID +K +ND  
Sbjct: 327 ATRQKLLYQAHHDHLTLLPNREYLRTHIKSWLSES----STPFTLMFIDIDNFKSVNDTH 382

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL  +  R+        ++ R + + F I+L++  +   +   A  +   ++ 
Sbjct: 383 GHEFGDEVLKQIALRLKSFDSDGRLIVREASDEF-ILLVNRTDENAVRTLASDLIHYLSE 441

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRS 702
           P  + E +  ++ SIG A + S       +L++A++AMY AK  R    V   ++ +   
Sbjct: 442 PYLVNENQFLLSCSIGVALYPSHGKNLDALLRSADIAMYQAKKERNAYSVFDQQMQAKHL 501

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +++ L LA+E   L+LVY P + + + EI G+EALI+W   + G +  +EF+ +AE
Sbjct: 502 HKMKVEQRLRLAIERQNLFLVYQPQLNV-NGEIYGVEALIRWQDEELGFVPPNEFIPVAE 560

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++  +   ++E+   D+      A   PI + INI+ K  +     + + ALI K  
Sbjct: 561 SSGLMVRLGELIIEKSLIDMARLTKLA-TQPIQMSINISVKQFIQVNFIDDLVALIDKHG 619

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               RI L  +E++ + +  +   +  RL  +G  ++LDDFGT  S LS L  +P D VK
Sbjct: 620 VDQHRITLEITENLFIEDLNKFAPICERLHTLGFKISLDDFGTGYSSLSMLKALPIDEVK 679

Query: 883 FNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +        A  ++++II + KN    ++A+ +       +L   GCD IQ    
Sbjct: 680 IDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETRQQRDQLAACGCDLIQGYFY 739

Query: 941 ASPLGFNSILKLLKE 955
           + PL F  ++   +E
Sbjct: 740 SKPLPFEQLISFAEE 754


>gi|161616413|ref|YP_001590378.1| hypothetical protein SPAB_04222 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365777|gb|ABX69545.1| hypothetical protein SPAB_04222 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 699

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 222/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGSSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|269102953|ref|ZP_06155650.1| hypothetical protein VDA_002379 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162851|gb|EEZ41347.1| hypothetical protein VDA_002379 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 658

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/550 (22%), Positives = 254/550 (46%), Gaps = 29/550 (5%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R+ LA     ++   ++     V+T    +   G         + ++L      D    R
Sbjct: 117 RRDLAFSECSNLALLFNQSGQLVSTNAAFSHQFG----ECVNDLASFL-----GDIAQAR 167

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            +L++    R      + ++     Q H W  I  + +     +  + +    +I+ +++
Sbjct: 168 QLLENAQQNRI----VDQKLLCWTGQRHLWFHIEGKWLE----EQQQLLLQLTNISPERE 219

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            L     N+  D LTG+ NR+     +++ + +S        +++ +D+D +K IND  G
Sbjct: 220 KLRQAKYNSEHDFLTGLMNRRG----ISSAIKIS-HHTKQPYSLLFLDLDGFKMINDTYG 274

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AVGD +L +++ R+ ++++   +LAR  G+ F +I +   N      FA  +  ++  P
Sbjct: 275 HAVGDRLLRAVSIRLRQVIQHRGLLARFGGDEF-LIHVERRNITTPCAFAKEVITALNKP 333

Query: 645 INLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +L E  E+++  ++G  ++         ++  A++AM+ AK RG N    F      + 
Sbjct: 334 FHLKEVGELSIGCTVGTTNYPEDAQDIDTLVTQADMAMHRAKLRGRNCCHHFSPDMADAL 393

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++  L LA+  +   L Y PI+ L   ++ G EALI+W+    G IS +EF+ +A
Sbjct: 394 YRKMILRHHLTLALNANAFELYYQPIVDLKKAKLKGFEALIRWNDDDLGQISPAEFIPLA 453

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +  ++L+   R +  W+ +       + +N++   L    L + ++A +   
Sbjct: 454 EETGQIVPLGQWILKTACRQLAEWKKKY-DHSFIMSVNLSRAQL-QTGLVQSVKACLDAY 511

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++ L  +ES ++ +   ++  L  L ++GI L LDDFGT  S LS L  +P  TV
Sbjct: 512 QIDPKQLALELTESTMLQDYSDAKQCLTELAELGIELYLDDFGTGYSSLSQLQDLPISTV 571

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S + G  +   AI+ +   + + ++  ++A+ +  E  +  L +   DY Q  ++ 
Sbjct: 572 KLDRSFVQGEHKGSQAIIEATQAICEKLDLKVVAEGVETEQQLDYLRQCNFDYCQGYYLG 631

Query: 942 SPLGFNSILK 951
            P+   +I +
Sbjct: 632 HPMPPQTIEE 641


>gi|126656070|ref|ZP_01727454.1| hypothetical protein CY0110_03269 [Cyanothece sp. CCY0110]
 gi|126622350|gb|EAZ93056.1| hypothetical protein CY0110_03269 [Cyanothece sp. CCY0110]
          Length = 831

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 254/577 (44%), Gaps = 7/577 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-AS 442
             V + +       + +     +       S   ++        +   P +A + G  + 
Sbjct: 251 LCVSRDITKRKQIEEALIQAERQYYKIFEKSNQGIFQLSPEGYFIDVNPALAQLYGYDSP 310

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +   I      +++   +N+  IL+  +      + +  ++   + +   +   I  +
Sbjct: 311 HDLLDNINTQTNQLYVE-VNNYDHILN-LLKTDGEIINFPSQIYRKNREIINIEETIWGI 368

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +L Y G       +    E       +D +T +PNRQ F + L +I+  S    
Sbjct: 369 YDQYGKVLYYQGTVQKFENKICQKEESTGINLRDPVTNLPNRQWFYEHLQSIVLDSLNFP 428

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N    +++I +D  + +++ L I   +++L+ +T+R+   L+  DILARL  + F +++ 
Sbjct: 429 NNSLGIVIIHVDSLQLLHESLNITQDNNLLIQITKRLQSKLRPKDILARLEEDEFVLLVR 488

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +  +I   A  +        ++   ++ +  +IG             M+K+A LAMY
Sbjct: 489 N-QSIQEIILIAKQILNIKDHSFDINNNKVFININIGINFNNVDYKKPESMIKDARLAMY 547

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK     +   F          R+ ++ DL  A+++ +L L Y PI+ L    + G EA
Sbjct: 548 QAKAEKKENYAIFNPKIKADALARIQLETDLRQAIKHKKLSLYYQPIVELNTGYLSGFEA 607

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILIN 799
           L++W HP  GNIS  EF+ IAEE+ +I  +  ++LE+    +  W++       + I +N
Sbjct: 608 LVRWQHPLKGNISPVEFIPIAEEIGLISYLGWWVLEQACYQLQIWQNLNTKAGQLVINVN 667

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++ L +    E +  L+  T    +++KL  +ES ++   +     +G+L+ +G+ L 
Sbjct: 668 VSAEQLKEENWHERLNYLLQNTGIEGTQLKLEITESCLLETVQHETQRVGQLKNLGLGLC 727

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           +DDFGT  S LS L   P DT+K + S ++       AI+  II +A  +   ++A+ I 
Sbjct: 728 IDDFGTGYSSLSRLHEFPIDTLKIDRSFISKLGISDKAIVLMIINLAHTLGMNVVAEGIE 787

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                 +L  + C+  Q    A P+        + + 
Sbjct: 788 TREQFNQLQGLNCELGQGFFFAQPMTSEQATHWVMQE 824



 Score = 73.1 bits (178), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           V    D++    +    +  +    ++LG  +    G    +L   H  D D  +   + 
Sbjct: 24  VENLTDLISFHTVEGIYLYISTSCQSLLGYNAQVFIGQSAGFL--CHPEDYDVIKQFYEQ 81

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLE 527
                       +R+R     + W+    + + N + G+I      + ++T++K++ E
Sbjct: 82  LKQQWNID-PITYRIRHNLGHYIWLETSAKVIPNQDTGEIEEIFCTSREVTKRKQNQE 138



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 6/144 (4%)

Query: 394 GYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              +Q      ++  +  +    D+V            +     +LG    S+       
Sbjct: 133 RKQNQEYSKSYQQPHTFILDNLPDLVTTHTPEGIYQYVSQVSHQLLGYFPKSLINQPIAS 192

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILR 511
               H  D    +      +  ++      +R+      + W+    + + +   G+I  
Sbjct: 193 FS--HPQDCALIKQFYQE-LQQKKSLASVTYRMVHKKGHYLWIETVGKAIVHPQTGEIKE 249

Query: 512 YIGIANDITEQKKSLEGILCNAFQ 535
            + ++ DIT++K+ +E  L  A +
Sbjct: 250 ILCVSRDITKRKQ-IEEALIQAER 272


>gi|219854069|ref|YP_002471191.1| hypothetical protein CKR_0726 [Clostridium kluyveri NBRC 12016]
 gi|219567793|dbj|BAH05777.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 633

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 216/440 (49%), Gaps = 10/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +     I   A+ D LTG+PN   F   +   +     + +   ++  ID+D +K +N
Sbjct: 197 ELRSQYYEIEKIAYYDQLTGLPNWNFFGIEVENRI---KENPDEGFSIFQIDLDNFKNVN 253

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD +L  +   +  L     +++R SGN F I+     +   + + A  +  +
Sbjct: 254 DIFGYEYGDKLLREIGNTLNSLHM--GMVSRSSGNEFLILKDKCESVESLNNTAQYILNT 311

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+   NL   EI ++ SIG   +       + +++N ++A+   K  G N  + F  S +
Sbjct: 312 ISGLWNLDGNEILISVSIGITVYPKHGDKFTTLIRNTDIALNKTKLLGKNSYKLFEKSMY 371

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +  ++++L  AV+N+EL L Y P + L   + V  EALI+W +PK G +   +F+
Sbjct: 372 DEILKKAEMEKELRRAVQNNELILYYQPQVDLKTRKAVSFEALIRWKNPKLGWVMPLDFI 431

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++L+        W+++      FI IN++   L D      ++ ++
Sbjct: 432 SLAEETGLIVPIGEWVLKTACMQNKVWKNKGYPYD-FISINVSPIQLKDKNFLSIVKKIL 490

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      +++  +ESV+M + E +  ++  L+ +GI + LDDFG+  S L+YL  IP 
Sbjct: 491 KETQLESQHLEIEITESVMMESLEGNLKVINELKGMGIRVALDDFGSGYSSLNYLKSIPI 550

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + + + G  +   +  I   II +A  +E  ++A+ + GE  I+ L    C+ IQ
Sbjct: 551 NTLKIDKTFIDGICKDSYKDIITEEIIKLAHRMELEVVAEGVEGEEQIQSLRGKNCNKIQ 610

Query: 937 DSHVASPLGFNSILKLLKER 956
             +   P+    I  L K++
Sbjct: 611 GYYFGKPMPSEHIETLFKKQ 630


>gi|153953446|ref|YP_001394211.1| signal transduction protein [Clostridium kluyveri DSM 555]
 gi|146346327|gb|EDK32863.1| Predicted signal transduction protein containing an EAL domain
           [Clostridium kluyveri DSM 555]
          Length = 627

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 216/440 (49%), Gaps = 10/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +     I   A+ D LTG+PN   F   +   +     + +   ++  ID+D +K +N
Sbjct: 191 ELRSQYYEIEKIAYYDQLTGLPNWNFFGIEVENRI---KENPDEGFSIFQIDLDNFKNVN 247

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD +L  +   +  L     +++R SGN F I+     +   + + A  +  +
Sbjct: 248 DIFGYEYGDKLLREIGNTLNSLHM--GMVSRSSGNEFLILKDKCESVESLNNTAQYILNT 305

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+   NL   EI ++ SIG   +       + +++N ++A+   K  G N  + F  S +
Sbjct: 306 ISGLWNLDGNEILISVSIGITVYPKHGDKFTTLIRNTDIALNKTKLLGKNSYKLFEKSMY 365

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +  ++++L  AV+N+EL L Y P + L   + V  EALI+W +PK G +   +F+
Sbjct: 366 DEILKKAEMEKELRRAVQNNELILYYQPQVDLKTRKAVSFEALIRWKNPKLGWVMPLDFI 425

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++L+        W+++      FI IN++   L D      ++ ++
Sbjct: 426 SLAEETGLIVPIGEWVLKTACMQNKVWKNKGYPYD-FISINVSPIQLKDKNFLSIVKKIL 484

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      +++  +ESV+M + E +  ++  L+ +GI + LDDFG+  S L+YL  IP 
Sbjct: 485 KETQLESQHLEIEITESVMMESLEGNLKVINELKGMGIRVALDDFGSGYSSLNYLKSIPI 544

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + + + G  +   +  I   II +A  +E  ++A+ + GE  I+ L    C+ IQ
Sbjct: 545 NTLKIDKTFIDGICKDSYKDIITEEIIKLAHRMELEVVAEGVEGEEQIQSLRGKNCNKIQ 604

Query: 937 DSHVASPLGFNSILKLLKER 956
             +   P+    I  L K++
Sbjct: 605 GYYFGKPMPSEHIETLFKKQ 624


>gi|254390813|ref|ZP_05006025.1| phosphodiesterase [Streptomyces clavuligerus ATCC 27064]
 gi|197704512|gb|EDY50324.1| phosphodiesterase [Streptomyces clavuligerus ATCC 27064]
          Length = 779

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 215/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R    L+ + ++   R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 319 LRDPLTGLPNRQWLLERTWAALEEAESN-GTRSALVLIDLDRFRSVNDTLGHLAGDRLLL 377

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L + ++       A  +   ++ P++L    + 
Sbjct: 378 QIAHRLRHALPRGAEAARLGGDEFAVLLPAADSITSAQRVARQLAGELSSPLDLDGLTLV 437

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 438 LEASAGVAVFPEHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 497

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D  + GLEAL++W HP  G +   EF+ IAE   ++  +  
Sbjct: 498 RALDAHEVELHYQPKVRF-DGHVAGLEALVRWVHPDRGRVPPDEFIAIAESSGLMPHLTE 556

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 557 YVLDTALAQVAKWRAQGLKVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 614

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 615 TEHVLLEDPQRAADTLAGLTDHGVRMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 674

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 675 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPQEAT 734

Query: 951 KLLKER 956
             L+ R
Sbjct: 735 AWLRAR 740


>gi|148550034|ref|YP_001270136.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas
           putida F1]
 gi|148514092|gb|ABQ80952.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida F1]
          Length = 708

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 242/574 (42%), Gaps = 14/574 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
              +          Q +  + E         +  + + +   D         P I+ +L 
Sbjct: 129 VQALLDQQRNRRMLQQLSRELEAARAFNASILENAAEGILVVDAHGIISFANPAISRLLA 188

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G     +  +         +        R+    ++ ++R    +   + +  
Sbjct: 189 APVQQLQGTPLLDVVQLTSTSLWR-ESDFYKAYQGRQIFRVHDAQLRTQGGELVPVALSC 247

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+          +    D++  +   + +   A  D LTG+ NR+ F       L  + 
Sbjct: 248 APLPADQ---QAMVVTVLDMSVVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGALLRNE 304

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             D  +  +M +D+D +K+IND LG   GD VL  +  ++ + L    +LAR+ G+ F  
Sbjct: 305 RSDKAQ-ALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGDEFTA 363

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +  S     +   +A  + + +++   +   ++ +  SIG A++         +L++A+ 
Sbjct: 364 LFDSLPYPEQAGRYAERLLERVSISHEVDGLDVCLGVSIGIATYPDCGANVEGLLRSADA 423

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G      +    +     R+M+++ +  A+E  +  LVY P +   D  + G
Sbjct: 424 AMYAAKQAGRQQYRFYDQELNGRARSRLMLEDSVRTAIEQQDFTLVYQPQVAFHDGRLRG 483

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W HP  G++    F+ + EE  +I  +  ++  + A    +W D+     + + 
Sbjct: 484 FEALLRWQHPSVGDVPPGLFIPLLEEARLINRLASWIYRQGAAQRQAWYDRFPA-DLVLG 542

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           I+++    +   L E +Q +I      P+++++  +E+ +M N + +   + RLR +G+ 
Sbjct: 543 ISLSRAQFVMPGLVEELQRVIQLYQLVPTQLEVEVAETSLMYNIDAAVKQIHRLRDLGVR 602

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFG     L  L  +P DT+K +  L+     +    A++RS+I +  +   T+IA
Sbjct: 603 VALDDFGAGDCSLRMLRDLPIDTLKLDRHLVARLPDSAVDAALVRSVIGLCADYRITVIA 662

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + +        L   GC+Y+Q   VA P+     
Sbjct: 663 EGVETPAQAAWLKANGCEYVQGFLVAYPMTAADA 696


>gi|332995173|gb|AEF05228.1| GGDEF/EAL domain-containing protein [Alteromonas sp. SN2]
          Length = 813

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/429 (27%), Positives = 213/429 (49%), Gaps = 6/429 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D LTG+PNR     ++   L  SA DD L   +M +D+D +KK+ND  G
Sbjct: 367 NTAKLEKMAMFDVLTGLPNRNMLTFQIENQLAHSARDDRL-VALMFMDLDDFKKVNDSYG 425

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L +   RI   ++  DI +R  G+ F ++L S  N  ++   A  + +    P
Sbjct: 426 HDVGDKLLKAAAMRISRPIRETDIASRFGGDEFVVLLSSIENKEQVEHVAKKIIEEFDQP 485

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           I     +  V+ SIG A    ++ T  E+L++A++AMY AK + G     +   ++    
Sbjct: 486 IEAGGMQFYVSISIGVAVSRHARATPVELLRHADIAMYEAKSKKGAGYRVYDATMNLKVM 545

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +V ++ +  +A+  S+  L   P I L   E++G EAL++W HP  G IS +EF+   E
Sbjct: 546 KKVELEAEARVALRESQFSLALQPQIDLRTNELIGFEALLRWYHPVKGTISPAEFIPSLE 605

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               +  ++ +++ +    +I   +    P + + IN+++   LD  L + +Q  I +  
Sbjct: 606 NTSFMLELDYWVIAKA-TYLIRELNANGYPNVKLAINLSAGQFLDPSLPDFLQQQIIRND 664

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SPS++ L  +E+V++ + ER+  ++  +R +G +L +DDFGT  S LSYL  +P D +K
Sbjct: 665 ISPSQVCLELTETVLVTDIERATSIMRTIRDMGCTLAIDDFGTGYSSLSYLKSLPADFIK 724

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +           I+ S I M + +   ++A+ I      + L    C   Q   +
Sbjct: 725 IDRSFVANIVENADDRNIVHSTIAMVRKMGLIVVAEGIETAEQFEMLCHFDCQMGQGYLI 784

Query: 941 ASPLGFNSI 949
           + P+    I
Sbjct: 785 SRPIPEPDI 793


>gi|319781295|ref|YP_004140771.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167183|gb|ADV10721.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 810

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/802 (19%), Positives = 320/802 (39%), Gaps = 66/802 (8%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVN---RSSMLIPTFAMAWVVLGYISIDFGFL 239
           +          +I G+ S  +    + ++     R+        +AW+++   S  FG  
Sbjct: 11  EHDLRLVALAALICGI-SCFSAVNLLQHISRSTDRNR-------LAWLMIAATSTGFGIW 62

Query: 240 SKLV----NLPSGELLIWRACSEIALSSSLIIFLFM--YLHWNRWHAKVGYITFSGIACI 293
           +           G    +     +   ++ +       ++   R       +  + +   
Sbjct: 63  ATHFIAMLAFTPGIPSAYDPALSVLSLAASVTLTAAGMWIATLRDEFDYHLVGGAVLGGG 122

Query: 294 AI---LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
                   M+ +          + +A  +L               R  L   +   + + 
Sbjct: 123 IAAMHYIGMAAFEVQGRIEWNLLLVAVSLLAGVTLAALALRVVQRRPSLKATSGGAVLLT 182

Query: 351 FIGLWMAITKRLDNDI---------------IQPALVGGLVLIVILIGFTVIQHVLATGY 395
                +         I                  A       +VIL+       +    +
Sbjct: 183 LAICILHFIGMGAVSIFPDPSIVISEYTIEPTSQAFAAAAATLVILVLSASALWI-DLRF 241

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q +  + +R       + + +   D     ++    IA + G+A+ +++G     L  
Sbjct: 242 RRQKL--EVDRMHGLANAAVEGLIVCD-GNRIISANDSIAALTGIATATLNGMQLGDLFG 298

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +D   F            G    E  +   D     + +  R + +  G     + +
Sbjct: 299 ---SDVSGF------------GEQPQEAELSGRDGTSIPVELIARSI-DYCGKPHNVVAV 342

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS-ATDDNLRPTVMVIDID 574
             DI E+KK+ + IL  A  D LTG+ NR+SF  RL T +     T    +  ++++D+D
Sbjct: 343 -RDIRERKKAEQEILRLARFDPLTGLANRRSFSGRLETEIAAMVRTRKGGQLALLLLDLD 401

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K++ND+ G   GD +L  + +    +L+   ++ARL G+ F II  +  + L+    A
Sbjct: 402 RFKEVNDLYGHGAGDAMLQKVAQCATGILRPGQMVARLGGDEFAIIAPNLADPLEAGRIA 461

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            A+  ++     L      V+ASIG A + S     + ++ +A+ A+Y AK  G +    
Sbjct: 462 NAVLTAMREENRLSVGGGLVSASIGIALYPSDAENQASLISHADTALYRAKTEGKDTYRY 521

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S      D+ +++ +L  AV   E YLVY P   +   ++VG EAL++W HP  G++
Sbjct: 522 FEASMGAEARDKRVMEHELRQAVARQEFYLVYQPQKEISSGKMVGFEALVRWRHPTRGDV 581

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+ +AE+   I  I  ++L     +   W +     P+ + +N+++  L +     
Sbjct: 582 SPAIFIPVAEDSGAIGQIGEWVLTAACEEAARWEN-----PLTVAVNVSAVQLHNTNFSR 636

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   +  +  +P R++L  +E+ ++ +  R+   L +++ +G+ + +DDFGT  S LS 
Sbjct: 637 KVHETLLNSGLAPGRLELEITETALVKDMPRALATLRQVKALGVRVAMDDFGTGYSSLSN 696

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K +GS +    +     AI+R+++ + + +   ++A+ +    ++K L   
Sbjct: 697 LRAFPFDKIKIDGSFIKSVDKNGQVAAIVRAVLGLGRGLGLPVLAEGVETLGELKFLDAE 756

Query: 931 GCDYIQDSHVASPLGFNSILKL 952
            C+  Q  ++  P       +L
Sbjct: 757 ACEIGQGYYIGRPALIEEFGEL 778


>gi|194365389|ref|YP_002027999.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Stenotrophomonas maltophilia R551-3]
 gi|194348193|gb|ACF51316.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Stenotrophomonas maltophilia R551-3]
          Length = 946

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/433 (27%), Positives = 214/433 (49%), Gaps = 12/433 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+ ++ + +   A  D LTG+PNR   LDRL   L L+  +      V+ +D+D++K 
Sbjct: 514 IGERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDALALARREGGPVFAVLFLDLDRFKL 573

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G A GD +LV + +RI  +    D++ARL G+ F ++L       +  DF   + 
Sbjct: 574 VNDSIGHAAGDRMLVEVAKRIVSMAGTDDVVARLGGDEFAVLLQCPQGLAQALDFGQRLL 633

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
            ++   + +  RE+  + S+G A W     T  E+L++A+ AMY AK +G +    F   
Sbjct: 634 LALQESMWIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCAIFDED 693

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +       + ++ DL  A+ N +    Y PI+RL D E+VG EAL++W H + G +    
Sbjct: 694 MREQAMRSLDLEADLRRAINNHDFLPFYQPIVRLSDGEVVGHEALLRWQHERRGLLLPGA 753

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +I+ ++  + E++   +            ++ +N++ +     E    +  
Sbjct: 754 FLELGEESGLIEQVDWLIYEQVIAGLAE------GGHTYVSVNVSPRHFRSAEFSGRLFG 807

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+      P R++L  +E  ++ +   +  +L  LR+ GI + LDDFGT  S LSYL   
Sbjct: 808 LLDAYGADPQRLRLEITEVALLDDGPHTLRILQGLRERGIQVQLDDFGTGFSALSYLHRF 867

Query: 877 PFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           P  T+K + S + G      +   A++  ++ +A+ +    I + I  E   + L  +GC
Sbjct: 868 PISTLKIDQSFIAGLHGPEVQSTRALVEGVLSLARTLGIETIGEGIETEAQQQTLRELGC 927

Query: 933 DYIQDSHVASPLG 945
           DY Q   +  P  
Sbjct: 928 DYGQGYLLGRPAP 940


>gi|291453912|ref|ZP_06593302.1| sensory box/GGDEF family protein [Streptomyces albus J1074]
 gi|291356861|gb|EFE83763.1| sensory box/GGDEF family protein [Streptomyces albus J1074]
          Length = 646

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 130/585 (22%), Positives = 253/585 (43%), Gaps = 42/585 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           ++ A   +   +   D     V      A +LG   G+               D      
Sbjct: 68  RADAFRRAPMALAVLDRAGRVVEANDAFAALLGTGPGAGALSRVAAELLGRPGD-----E 122

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +  RR  L+   RVR A+ +  W+++ + P   ++G     +    DI+ +++  
Sbjct: 123 TVRAVLEGRRAGLRRTRRVRDAEGRARWLLVAVEP-PRADG-PGGALLSVTDISARRELE 180

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRL--------------------TTILDLSATDDNLRP 566
             +      D +T +PNR  F +RL                          +      R 
Sbjct: 181 ARVRDLRMHDPVTRLPNRALFFERLASVAGPSGPEGAAEHGEHPEDRWPPEAGQARTGRI 240

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD------ILARLSGNRFGII 620
            V  +D+D +K +ND  G   GD +L ++  R+  +           ++ARL G+ F ++
Sbjct: 241 GVCYLDLDGFKAVNDTFGHRTGDLLLTAVAERLSRVAVAGARGGRTPLVARLGGDEFALL 300

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   + + ++   A A   ++  P +     ++V+AS+G     +S  T++E++++A+  
Sbjct: 301 VPDSSGTEQLTALAAAALVALEEPFDADGERLSVSASVGVVERPASATTATELMQDADTT 360

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  GG     F             +  +L  A+   E  L Y P++ L D    G+
Sbjct: 361 LYWAKADGGGRWTLFDPERNAHRMTRQVLAAELRPAIGRGEFVLDYQPLVDLADGTTSGV 420

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797
           EAL++W HP++G +  S F+  AEE   +  +  ++L        +W+  +     IF+ 
Sbjct: 421 EALVRWRHPQFGTLPPSRFIGQAEEDGSVVQLGRWVLRTACAQARAWQVARPGRRAIFVS 480

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+A + + D++L   + A +  T   P  ++L  +ES +MG+  R   +L  L  +G+ 
Sbjct: 481 VNVAVRQVWDSDLVADVAAALEATGLPPELLQLELTESALMGSAGRPLRVLQALSAMGVR 540

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK------RIAILRSIIPMAKNIET 911
           + +DDFGT  S LSYL  +P   +K +GS +    +          ++ +++ +A  +  
Sbjct: 541 IAIDDFGTGYSNLSYLSRLPVSVLKLDGSFVRSFRDDVPPGAADEVVVEAMVSLAHRLGL 600

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           T+ A+ +      + L  +GCD  Q    + P+G   I  LL+++
Sbjct: 601 TVTAECVETAQQARRLRGIGCDTGQGWLWSRPVGPERIAGLLRQQ 645


>gi|15891688|ref|NP_357360.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15160142|gb|AAK90145.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 772

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/461 (26%), Positives = 227/461 (49%), Gaps = 19/461 (4%)

Query: 503 SNSNGDILRYIGIAND-ITEQ------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +  GD+   I    + + E+      +   + +   A  D LTG+PNR   +  L T L
Sbjct: 288 RDEIGDMATAIETLREAVLERGRLRQIRDMAQQLEHMAHHDALTGLPNRVLLMKTLETRL 347

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           +  +        VM++D+D++K +ND LG A GD +LV++  RI  +L   D+++RL G+
Sbjct: 348 EHLSASGQP-FNVMLLDLDRFKAVNDTLGHAAGDALLVAVASRISAVLGENDMVSRLGGD 406

Query: 616 RFGIILISENNSL-KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            F II  +  +     A  A  +  +++   +L    I++  SIG A       +++++L
Sbjct: 407 EFAIIQSTNADCESDAAMLAARVVHAVSRSFSLEGSTISIDTSIGIACAPVHGTSATQLL 466

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+L +Y AK  G  +   +   +      +  ++ D+  A+EN E  L Y P++ L  
Sbjct: 467 QHADLGLYRAKSMGCGYFVFYEPGMDMAAKHKHALEIDMKSALENQEFELYYQPVVNLQS 526

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IV  EAL +W H K G I+   F+ +AEE   IK +  ++L +   D ++W       
Sbjct: 527 GRIVAYEALARWRHSKLGLITPDRFITLAEENNFIKPLGEWVLAQACMDAMTWPK----- 581

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I + +N+++  L ++++   +   + K+ +   R++L  +E+ ++   + S   L  L+
Sbjct: 582 DIRLAVNLSAVQLSNDDIVPVVDRALEKSGFPAERLELEVTETAMLER-DSSTKALKLLK 640

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           + G+ L LDDFGT  + LS L ++ FD +K +   ++G        AI+ +II MA+ I 
Sbjct: 641 ERGVRLALDDFGTGYAGLSTLTHVAFDKIKIDREFVSGLPTNPMCSAIVNTIIDMAEQIG 700

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + A+ +     ++ L   GCD  Q  + A P     I K
Sbjct: 701 LKVTAEGVENRDQVEALKLSGCDEAQGYYFAEPAPLARIFK 741


>gi|194446201|ref|YP_002042644.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404864|gb|ACF65086.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 699

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 222/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGSSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|121996982|ref|YP_001001769.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121588387|gb|ABM60967.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Halorhodospira halophila SL1]
          Length = 823

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 210/434 (48%), Gaps = 7/434 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +A D+         +   A  D  TG+PNR   L R+   +  ++  +  R  V  +
Sbjct: 363 LVELAEDVGFALDHSAQLQYLAEHDLTTGLPNRSWLLGRVAQGIRRASDSE--RFAVAFV 420

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG   GD +L  +  R+GE+++  D + R  G+ F ++L    ++ ++A
Sbjct: 421 DLDRFKVVNDSLGHDAGDQLLRQVAERLGEMVRSGDEVGRHGGDEFLMLLHDLESTEQVA 480

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +      P+ +  RE+ VT S+G + +      +  M++ A+ AM+ AK  GGN 
Sbjct: 481 QLVQRVLNRFRKPLRIDGREVAVTPSVGLSVYPGDAADADGMVRAADTAMHRAKDEGGNR 540

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F     R  R    ++  L  A + +EL L Y P + L   ++VG+EAL++W HP  
Sbjct: 541 YRFFTEEMNREVRQRVELEAMLRNAEQRNELELWYQPQVALSTGQVVGVEALLRWHHPDR 600

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF+ +AEE  +I AI  +++ R       WR    +  + + IN+++  L    
Sbjct: 601 GWISPGEFIPVAEESGLIGAIGEWVIGRACDQAAEWR-GRGVLQVPVAINLSAAQLRGTG 659

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +Q  + +       ++L  +ES+   +    R  +  L+  G+ L +DDFGT  S 
Sbjct: 660 LPAVIQRALGRRSLPAEALQLEMTESLFFEDDVNVRTAIAELQSRGLQLAVDDFGTGYSN 719

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L YL  +P   +K + S + G     +   I R+II MA+ +    IA+ +     ++ L
Sbjct: 720 LGYLKRLPLAKIKIDQSFIHGVPEEPEDCVITRAIIHMAQGLGLRAIAEGVERPEQLELL 779

Query: 928 TRMGCDYIQDSHVA 941
            ++GCD +Q    +
Sbjct: 780 RQLGCDEVQGYLFS 793



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 63/209 (30%), Gaps = 12/209 (5%)

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           + +    L +   I   +  +   +A    L   +    L  G V+  +         + 
Sbjct: 5   RRFHPRWLPLAVSIAYAVLGLFWILATDGLLIAWLPAEWLPVGQVVKGVAFILVTAGLLY 64

Query: 392 ATGYFSQGIFSDGE-------RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                      + E                 D++   D     +   P    + G+    
Sbjct: 65  LLLRRLARAAREREDLHGQFRSFETLAEHIPDVLVRLDNQLRYLYVNPAFEALTGVDRRE 124

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             G  +  + Y   +    ++ +L+      +   L +EF       Q   +  R+ P  
Sbjct: 125 ALGRCQEEVGYPPPS--PQWQALLERVRDCGQPETLSFEFTDVR--GQTCSLQARLVPEF 180

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
           ++ G ++  + +  D+TE  ++ + +   
Sbjct: 181 DAGGQVVSMLALVRDLTELNRAHQRVSQL 209


>gi|109900291|ref|YP_663546.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702572|gb|ABG42492.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 718

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 239/551 (43%), Gaps = 17/551 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  +   V         ++  P + ++               +  +     +      +
Sbjct: 165 VIEKTDIGVAILSPNLQPISQNPALYSLFDTHITQPETQPYEIILQL----FEKQYPEFE 220

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +     R   E           W+ + I P+      I  ++ + +DI++ K  L+  
Sbjct: 221 RVIST-GSRWSGELFWLKPPGTGKWIKLSIYPVKADFQQITHWVFMLSDISQVKHLLQNN 279

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               + D LT IPNRQ F  +L   ++ +     +   V+ +DI  +K+IN++ G + GD
Sbjct: 280 EKLTYYDALTDIPNRQYFWMQLEQSVNNA-----MPFYVLYLDIKNFKRINEIHGHSRGD 334

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-L 648
            ++  L  RI   +   D+ AR+ G  F II        +  D    +  +   P  L  
Sbjct: 335 QIIKELVERITPHISEGDMFARIGGGEFAIIRQKTVTEQQCIDLGHKLIDAAVQPFFLPN 394

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706
                +  +IG AS+      +  ++K A+LA+++AK    + V+ +           + 
Sbjct: 395 GTHCEIGLNIGAASFPRDADDAETLMKFADLAVFNAKKASKSSVQFYSQELKEASQRIIE 454

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+ N E  L   P++ L    I+  EAL++W+      I   EF+ IAE+  +
Sbjct: 455 LENALQSAITNHEFELFLQPMLDLTSGTILKAEALLRWNRLDGERIGPDEFIPIAEQTGL 514

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  +++ R    I +   +       + +N++ + + D  L E ++  I  +   P+
Sbjct: 515 IVPIGKWVISRACEMISTLNHRGY--SCKLSVNLSPRQISDRHLLEFIRGSIQNSHILPN 572

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           +++L  +E V++ N ++ + LL  +RK+G+S+++DDFGT  S LSYL  +P D +K + S
Sbjct: 573 QLELELTEGVLVDNYDKVQYLLTEVRKLGVSVSIDDFGTGYSSLSYLKKLPIDHIKIDRS 632

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      E   AI+ +II MA +++  +IA+ +  E+    L    C+  Q    + PL
Sbjct: 633 FVQDLVSDENDKAIILAIIAMAHSLKLNVIAEGVETELQRNFLQLNHCNLAQGYLFSRPL 692

Query: 945 GFNSILKLLKE 955
            F    + L  
Sbjct: 693 PFAQFCEYLSA 703


>gi|260776756|ref|ZP_05885650.1| hypothetical protein VIC_002144 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606422|gb|EEX32696.1| hypothetical protein VIC_002144 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 827

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 213/440 (48%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     +     A  D LTG+ NR     +L   +  S         ++ +D D++K IN
Sbjct: 378 ELHDEKKNFDFLAHHDPLTGLANRLLATKQLEREIAQSKQS-GAPFVLLYLDTDEFKTIN 436

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++LV+++  + +++     +AR+ G+ F I++ S+ N       A  + K+
Sbjct: 437 DSLGHASGDNLLVNISEILTKIIGDSGFVARMGGDEFMIVI-SDANLKDGEALAERINKA 495

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  + +  I V+ SIG   +         +++NA+ AMYHAK  G +  + +     
Sbjct: 496 LRKPYYIEDNLIFVSTSIGVCEFPLHGKDGETLVRNADTAMYHAKRCGRDQYKVYADKMT 555

Query: 701 RSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +++ +  L  A+ N EL + + P + L    IVG EAL++W+HPK G +  +EF+
Sbjct: 556 HEVTDLVETNIGLRQAIANEELVVYFQPKVDLDSNTIVGAEALVRWNHPKLGMLPPAEFL 615

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQAL 817
            +AE+  +I  I+ ++  ++A  I  W+         +  IN +++     +L E +Q +
Sbjct: 616 EVAEKTDLITEIDKWVFRKVANLITQWQRAGIDLQGVLFSINFSARMFYRTDLAEQLQQI 675

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T   P ++ L  +E  +M + E     +  LR+ G  + +DDFGT  S LS L  + 
Sbjct: 676 LDDTDCQPHQLLLEITERDMMRDFETCVRTIATLREKGYKIAIDDFGTGYSSLSVLKNLS 735

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I R+++ +A+ +E ++IA+ +  E  ++ L ++GC   
Sbjct: 736 ADCIKLDRSFIEDVNSSKVDYEITRAVLKLAQILEFSVIAEGVETESHVETLRQIGCRCA 795

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + A PL     +  L  
Sbjct: 796 QGYYFAKPLPVEEWINYLHS 815


>gi|172058710|ref|YP_001815170.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171991231|gb|ACB62153.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 928

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 130/578 (22%), Positives = 245/578 (42%), Gaps = 14/578 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATIL-GLA 441
             VI ++       + +  + E+       S   ++ +DI + ++   T     I  GL 
Sbjct: 252 ACVIYNLSEHKSLDKQLHDEKEKFLTFQQVSTSAIYRYDIDQKKIDFHTRGFENIFEGLL 311

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                         I   DR          +      +   +R+R  D   HW++    P
Sbjct: 312 HRHQQVDGLWIEDLILPEDRSKVEASYHRVLANHESEVS--YRIRH-DEMIHWILENRTP 368

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +  ++G +  +  +  DIT+ K+  E I   A  D +TG+PNR   L+++   +      
Sbjct: 369 IRGADGVVSAFQSVIQDITQLKQQEEKIFQLAMHDRVTGLPNRTLVLEQMNQWIATY--- 425

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                +V+ +  +  + IN   G  +GD  L     ++   L        L G+ + ++ 
Sbjct: 426 --PTFSVLTVSYNALQDINHDFGYPIGDKWLSKTATQLLHHLPTASYFGHLYGDEYIVLF 483

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +      I      + +     I +   E   +  IG + +     ++ +++K A +A+
Sbjct: 484 PNVVEECSINKICEQLIELSKQKIVIDSYEWYPSIGIGVSRFPEDADSAEDLVKTASIAL 543

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             A       V S   +     R  +++ +  A+  +EL+L Y P +      IVG EAL
Sbjct: 544 GRA-RVNEYSVYSSTFNIETYRRHQLQKSIRTAIRRNELFLEYQPKVNAWSGTIVGAEAL 602

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP WG I  ++F+ ++EE  M   I  ++LE   R+I  W   A++P + + IN++
Sbjct: 603 IRWQHPDWGRIPPNDFIPLSEESEMHILIADWVLEETCRNINQWI-LADLPIVPVSINVS 661

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K L+     E  Q  + +   SPS +++   E+ V+ +  + +  L  L ++GI + LD
Sbjct: 662 PKRLIHGNFAETCQETLQRFGVSPSMLEIEILETDVLFDNSKIQQSLQMLSQMGIKIALD 721

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S +SYL   P DT+K +    T     +K  +++RS++ MAK     ++A+ + 
Sbjct: 722 DFGKGYSSISYLQQYPIDTIKIDRQFATTLVQDKKTQSVVRSVLFMAKEFGMDVVAEGVE 781

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               +  L  + C  IQ    + PL      + ++ R 
Sbjct: 782 TMGQLHFLRGLECTTIQGYLFSKPLPKADFEQAMRRRQ 819



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D ++  DI+          + +LG    ++    +++   +H +D+D+       
Sbjct: 25  MENHPDAIYTLDILGRVTRLNDKTSLLLGYTRDALMNHFKHF---VHPDDQDSTVFHFQQ 81

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
            +  +        R+R +   +  M+I   P+  +NG I+   GIA D+T  +   + +
Sbjct: 82  VMQGKSETY--TVRIRHSKGHYLEMMIVNIPIF-ANGLIVGAYGIARDLTTNRLMRQQM 137



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 11/154 (7%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L    +++  + +  F Q +       +LA          ++   + + ++   A + G+
Sbjct: 127 LTTNRLMRQQMDSIQFDQQLVETLPGIALAA---------FNEHGNLLRSSDSFAELFGV 177

Query: 441 ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIR 498
               +     + +L  IH  D+  FR  LD     R    L  E RV    + +  +  R
Sbjct: 178 RPEQLKHLSKQEFLQRIHPADQQEFREYLDLLKTNRCLPSLDIETRVLHPQHGYQDIFCR 237

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                +          +  +++E K   + +   
Sbjct: 238 CAFRQDDRQQQAELACVIYNLSEHKSLDKQLHDE 271


>gi|239787449|emb|CAX83921.1| putative response regulator receiver [uncultured bacterium]
          Length = 584

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/451 (26%), Positives = 224/451 (49%), Gaps = 27/451 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E++   E +   A  D LTG+PNR+ F DRL   + +   +  +   ++ +D+D++K 
Sbjct: 132 IRERRHLEELLREQAEFDALTGLPNRKLFHDRLEQAILMGVRNHRV-FALLFVDLDRFKW 190

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L+ ++RR+  +++  D +ARL G+ F +IL+   +       A  + 
Sbjct: 191 VNDTLGHDAGDALLIEMSRRLKSVVRKSDTVARLGGDEFTVILVDILHESMAELVARKIL 250

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + +  P+ L  +E+ ++ S+G A +     ++  ++K+A++AMY AK  G N    F   
Sbjct: 251 EQLVQPVTLKGQEVAISGSVGIAIYPVDGDSAVHLVKHADVAMYQAKESGRNAYRFFSSA 310

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +     R+ ++ ++  A    E YL Y P  ++    + G+EAL++WDHP  G +    
Sbjct: 311 LNEQLVQRMTMEGEMRQACLRDEFYLDYQPKFKITTGRMTGMEALVRWDHPDKGILFPQH 370

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQ 815
           F+ +AE   +I  I  ++L    RD   W ++     + + +N+++    D E L + ++
Sbjct: 371 FIHLAEGNGLIVQIGAWVLRTACRDAARWAEE-GFKDLKLAVNLSALQFKDGEKLLDLVE 429

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T      ++L  +E+++M N E+    L +LR +G+S+T+DDFGT  S L  L  
Sbjct: 430 ESLRETGLPARNLELEITETMMMNNIEQVTATLHKLRALGVSITMDDFGTGYSSLGVLKK 489

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI----------ETTIIAKDIYGEID 923
           +P + +K + S +   TE     A + +I+ MA+ +                        
Sbjct: 490 LPVEGIKVDRSFVNDLTEDSPDTAFVAAILSMARELGVHVVVEGVE----------TAEQ 539

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ L   G + +Q    + PLG  +   +LK
Sbjct: 540 LRILVNQGGEDVQGYFFSPPLGREAFSAMLK 570


>gi|82703078|ref|YP_412644.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411143|gb|ABB75252.1| diguanylate cyclase/phosphodiesterase [Nitrosospira multiformis
           ATCC 25196]
          Length = 975

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/546 (21%), Positives = 223/546 (40%), Gaps = 18/546 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILD 469
           +  +  IV       + +T      T++      + G    +L  + ++    +    L+
Sbjct: 427 LDIAQVIVITQKADGEILTLNAYGETLIQYTEKELQGTP--FLHLLALDGNLHDLPVHLE 484

Query: 470 SFVGYRRGRLQYEFRVRAADNQFH---WMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                RR +L++E  V   D       W+  R+   S  +      + +  D+TE K++ 
Sbjct: 485 EVRCQRRDQLRHEANVVCKDASIRNILWLHSRLTRHSEDD---PAMLSVGLDMTEHKRAE 541

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A  D LT + NR+ F + L  +L+L+A        ++  D+D++K IND  G  
Sbjct: 542 GRLAWLADHDPLTDLFNRRRFQEELEQMLNLAARY-GYSGALLFFDLDQFKYINDTSGHQ 600

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L  + R +   ++  DIL RL G+ F +IL        I      +       I 
Sbjct: 601 AGDALLKMVARLLLGNIRSVDILGRLGGDEFAVILPQTTAEGAIEVAKNTLASLNQGKIT 660

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +  R    +AS+G A +        ++L  A+LAMY AK  G      F       +R+ 
Sbjct: 661 INGRTHKASASVGIALFPEHGSNVHDLLAAADLAMYQAKEAGRGGWHLFSDEEKTRERMH 720

Query: 707 ----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                KE +  A+ +      + PI+ +    I   E L++        ++   F+  AE
Sbjct: 721 TLVYWKEKIEYALSHERFLFYFQPIMHVRRRTIDHYEVLLRMIDNDGTVLAPQFFIPAAE 780

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I AI+  +L +        +       I   IN+++    D EL   ++   ++  
Sbjct: 781 QTGLIHAIDHMVLRKSIAQSAEIQRAG--QCIRFSINLSAHAFHDPELLPILKDAFAEYG 838

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS      +E+  + +   +R L+  ++K+G S TLDDFG   S   Y+  +P D VK
Sbjct: 839 ADPSNFMFEITETAALEDLPAARELMEMIKKLGCSFTLDDFGVGFSSFYYIRQLPIDVVK 898

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +     +     +++++  +A+       A+ +        L +M  DY Q   +
Sbjct: 899 IDGSFIRNLADSPDDQILVQALCDVARGFGKKTTAEFVENAATFSILEKMQIDYAQGFLI 958

Query: 941 ASPLGF 946
            +P   
Sbjct: 959 GTPSPA 964


>gi|109899843|ref|YP_663098.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702124|gb|ABG42044.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 590

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/540 (24%), Positives = 246/540 (45%), Gaps = 44/540 (8%)

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII--------------------- 497
            + +    +LD  +    G    E+     + +   +I+                     
Sbjct: 47  EEHNPALLLLDVSMPEMNGFDVCEYIRTHKNGKHIPIIMVTGSDDIDSIHKSYAVGATDF 106

Query: 498 RIRPMSNS--NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             +P+        +   +  +    +     + +   AF D+LTG+PNRQ  +  L   L
Sbjct: 107 IAKPIKWPILGERVKYILRASQAFADLVTQQQELHQLAFYDSLTGLPNRQYLMQDLKRFL 166

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR---- 611
            ++  +   +  ++ ID+D++K+IND +G + GD +L  +  R+   L+  D  AR    
Sbjct: 167 AMAKRN-KYQAAMLFIDLDRFKRINDTMGHSYGDKLLRKVAHRLQANLRDSDTFARVAAE 225

Query: 612 ----------LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                       G+ F I L   N+  +    A  + +S + P  L + E+ VT SIG +
Sbjct: 226 KNKEAPQLSSFGGDEFTIFLSRLNDPNEAMLVAERVIRSFSTPFQLEQYEVVVTPSIGIS 285

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSE 719
           ++ +    +  +LKNA+ AMY AK  G    + ++ S       R+ +++DL  A++++E
Sbjct: 286 TFPNDGEDAETLLKNADTAMYFAKQSGRCCYKFYQDSMNSKAAARLQLEQDLRQALKSNE 345

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           +   Y P +      IVG+EAL++W   K G I   EF+ IAEE  +I  +   +LE+  
Sbjct: 346 IVPFYQPQVCAKTGRIVGVEALVRWLPLKGGIIPPDEFIPIAEETGLINELGRLVLEQGC 405

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                W D  +   + + IN+++      +  + +  +++++   PS ++L  +ESV+M 
Sbjct: 406 YQAKQWLDSGH--SVRMAINVSAHQFRQLDFTQTVAKVLAQSQLPPSLLELELTESVIMS 463

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897
           + E +   L  L+ +G+SL +DDFGT  S LSYL   P D +K + S M         +A
Sbjct: 464 DAEENIARLVELKSLGVSLAVDDFGTGYSSLSYLKRFPIDILKIDRSFMCDVNSAPDDVA 523

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           I+ +I+ +A+++   +IA+ I     I  L       +Q    + P+  + I  LL + F
Sbjct: 524 IVEAILALAESLTLGVIAEGIEYCSQITILKNTSNLLLQGYLFSRPVAADYIGPLLSQDF 583


>gi|295700626|ref|YP_003608519.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295439839|gb|ADG19008.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 689

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 222/437 (50%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++SL+ +   A  D LT +PNR    + L+  L  +A       +V+ +D+D++K +N
Sbjct: 237 HLRRSLKRLEHQAKYDALTELPNRVLLGEHLSESLVRAAATGQ-NVSVLFLDLDRFKDVN 295

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L ++ RR+  LL+  D +AR  G+ F  I+    +  ++ +    +   
Sbjct: 296 DSLGHRVGDLLLQAVARRLQRLLRATDFVARYGGDEFV-IIAERADVKQLTEMLDTLIHE 354

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           ++ P  + E E+ + ASIG +++         + +NA+ A+Y AK RG N  + +     
Sbjct: 355 MSEPYRIGEHELYLEASIGVSTYPQDGAQPELLTRNADAALYVAKSRGRNGYQFYEPELS 414

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++++ +   L  A + SELYL Y P I +    IVG EAL++W   + G +S + F+
Sbjct: 415 RAAAEKLRLTTRLRRAAKASELYLAYQPQIDMKSGCIVGAEALLRWHDDELGEVSPAVFI 474

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I++I  ++L +      +W      PP+ I +N++   L   +L   +++ +
Sbjct: 475 PLAEETGLIQSIGTWVLRQACLQASAWVRSGL-PPVRISVNVSPLQLERADLPGVVRSAL 533

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
               +    ++L  +E  +M N E ++     LR++G+S+ +DDFGT  S LSYL     
Sbjct: 534 EDANWPAELLELEVTEGTLMRNAEEAQRAFRELRELGVSIAIDDFGTGYSSLSYLKRFSV 593

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +      +   A+  +II +A+ +   ++A+ +  ++  + L R GC   Q
Sbjct: 594 DRIKIDRAFVCEIGRDKELEALSLAIIAIAETLSFDVVAEGVELDVQREFLVRHGCTVAQ 653

Query: 937 DSHVASPLGFNSILKLL 953
               +  +   ++ +LL
Sbjct: 654 GFLFSPAVSPEALAQLL 670


>gi|3659614|gb|AAC61683.1| c-di-GMP phosphodiesterase A [Gluconacetobacter xylinus]
          Length = 765

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 208/439 (47%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  +   +   A  D+LTG+ NR +    +  I+       N    + ++DID+++ IN
Sbjct: 286 EQHATKTHLTQLARYDSLTGLLNRGALHRVMEDIIAQP---GNRTLAIFMLDIDRFRDIN 342

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV +  RI  + K   +L+R  G+ F +++        I + A  + ++
Sbjct: 343 DALGHVYADQFLVEIAGRIRSIAKDDYVLSRSGGDEFVVVVPDCEGKQ-IEEIAHKLLET 401

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P+ + +  ++++ SIG +++ ++   S  +L +A+ AM  AK  G        +   
Sbjct: 402 IGRPLQIGQNTLSISCSIGISTFPANGPDSESLLSHADTAMRQAKEDGRGIFRFANLEKN 461

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 462 QVAQDRLVLGSALRDSLAQGMLQLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSRFI 521

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R I+ W       P  + +N+++    +  L E + AL+
Sbjct: 522 AVAEETGQIEAIGRWSLLEACRQIVKWDRDGIHVP-TVAVNLSAVHFRNRALPEHIAALL 580

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 PSR+ +  +ESV+M N   +  +L  +R IG  L++DDFGT  S LS L  +P 
Sbjct: 581 KDHNLKPSRLTVEITESVMMDNSRDTEEVLQSIRNIGCGLSMDDFGTGYSSLSRLTRLPL 640

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L ++ CD +Q
Sbjct: 641 TEIKIDRSFINDFEYDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEKLNCDVMQ 700

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL    +   ++ 
Sbjct: 701 GYLFAKPLAPQDLESWVRR 719



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDRDNFRT 466
           A+  + D         + +       ++ G+    + G   + L      H +DR  +  
Sbjct: 15  ALEQAIDATVIIGQENEIIFYNQAAESLWGIPRADVIGRNVDCLVPTRLRHEHDR--YID 72

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIGIANDITEQKK 524
                   R      E     AD ++    + +  +    G   +  Y+G+  ++TE+ +
Sbjct: 73  RNRETGHNRIVGTSREVEFTRADGEYICGELSLSKVQIGQGDKRLTYYMGVMKNVTEESQ 132

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD--DNLRPTVMVID 572
             + ++     D L  + +    +  +  ++         N    ++V+D
Sbjct: 133 RRKILILQ--NDVLQALAS-DMLIQDIGELICRKVEAFVPNSVAALLVLD 179


>gi|158338058|ref|YP_001519234.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158308299|gb|ABW29916.1| diguanylate cyclase/phosphodiesterase with EAL domain
           [Acaryochloris marina MBIC11017]
          Length = 585

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 231/441 (52%), Gaps = 5/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ E +  + F D LT +PN+     RL   L  + T  +    ++ IDI  +K IN
Sbjct: 137 ERKRAAEQLRHSIFYDWLTELPNQSFIRLRLVDALSQTKTGPDGSFALLYIDIKHFKAIN 196

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             LG+  GD +L+ + +R+ ELL+  DI AR  G+ F ++L   +   +       +++ 
Sbjct: 197 TRLGLWAGDQLLMMVAQRLSELLRPDDIAARFGGDDFVVLLRPVDGEQETRKITEKIQRH 256

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P  +  ++I +   +G A  +S      +++++A  A+ +AK  G  +   F  +  
Sbjct: 257 LLVPYAIHSQDIHIQFDMGIAMGSSLYQQPEDLIRDACTALEYAKSHGAENYAIFHQTMH 316

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ DL  AV  +EL + Y PII L D  +   EAL++W HP  G +S  +F+
Sbjct: 317 LQSLTRMQLEHDLSRAVWQNELRVCYQPIISLADGSLQAFEALVRWQHPTLGLLSPDQFI 376

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I  I  ++L      I  WR+Q +  P+ + +N++++ L   +L + ++ ++
Sbjct: 377 AIAEDSGLIIPIGAWILREACEQIHKWRNQTH-LPLSMHVNLSARQLDQLDLLDSIRGIL 435

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T   P  +KL  +E++V  N E +  +L +++ +GI L++DDFGT  + LSYL  +P 
Sbjct: 436 AETQLDPRGLKLEITETMVFNNLEYAAAMLRQIKGLGIQLSMDDFGTGYASLSYLHQLPV 495

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           I++++I +A ++   ++A+ +        L  +GC+Y Q
Sbjct: 496 DNLKIDRSFVETIDTSGTESEIIQAVIQLAHSLNIDVVAEGVETVEQANRLKNLGCEYAQ 555

Query: 937 DSHVASPLGFNSILKLLKERF 957
               A P+    I K+L + F
Sbjct: 556 GYLFAKPMEPGQIEKVLHKNF 576


>gi|218886997|ref|YP_002436318.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757951|gb|ACL08850.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1054

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 262/565 (46%), Gaps = 10/565 (1%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +    E+     L +G      +         P+   ++ +    +     +W  + H +
Sbjct: 495  LEESEEQYRAMFLNTGTPAILINEDTTIALANPEFLRLVRMVQADLDHRP-SWTGFFHEH 553

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            D                   +YE R+  A    H + + +  + +++      +    DI
Sbjct: 554  DLPRMLGYHADRRNGVAAPREYETRLIDAAGGLHHVAMTVTMIPHTHQS----VAFIRDI 609

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            T+ K +   +   AF D+LTG+PNR   L+ L  +L  +         V+++D+D +K +
Sbjct: 610  TDMKLAEARLQELAFTDSLTGLPNRLRGLETLDDMLTEARRKAQP-LGVLLLDLDDFKLV 668

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND +G A GD VL+ + RR+G +L   + +ARL G+ F I   +   S   A+ A  +  
Sbjct: 669  NDSMGHATGDVVLMEVGRRLGAVLDPDEAVARLGGDEFIIFTAARGGSEAHAELAKRLIT 728

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
              + P  +   E+ +  SIG A++ +   T   +++ A+LAMY AK  G N    +    
Sbjct: 729  EFSTPFRVAHSEVYLGVSIGIAAFPADGDTGGHLVRCADLAMYRAKASGKNTYRFYTPEL 788

Query: 699  -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  R+ ++ +L  A+    +   Y P++ L    IVG EAL +W  P    ++ +EF
Sbjct: 789  TRAAQHRLEVEAELRPAIAQGHIVPYYQPVVDLGSGRIVGAEALARWRKPDGSLVAPAEF 848

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE+  ++ +I++ ++ R     ++W +      + +  NI+++ L    L   ++A+
Sbjct: 849  IPVAEQTGLVTSIDMAVISRACSQTLAWTEAGLGR-LRVSCNISARHLQRGNLPGDIRAI 907

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +  +  S +++ L  +E+V M N +++R +L  + ++G+ + LDDFGT  S LSYL  + 
Sbjct: 908  LDASGLSAAQLALEVTETVYMENIDKARAMLDAVTELGVPIVLDDFGTGYSSLSYLQSLS 967

Query: 878  FDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            FD +K + S +        +A+LR+++ +A  +  T +A+ +        L  +GC   Q
Sbjct: 968  FDIIKIDRSFVKDLPDASSLALLRAMLGIAAGLGVTSLAEGVETVEQYVLLKSLGCGKGQ 1027

Query: 937  DSHVASPLGFNSILKLLKERFPLVK 961
                + P+      +LL+E+    +
Sbjct: 1028 GYLFSPPVPAARFEELLREQKAGKR 1052


>gi|320155932|ref|YP_004188311.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931244|gb|ADV86108.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 807

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 217/445 (48%), Gaps = 6/445 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D  + ++S E +   A  D+LT +PNR     ++ + +         +  VM +D+D
Sbjct: 359 IRTDFKKLEQSQEQLAYQAKHDSLTKLPNRSLLEVQIVSGIQRCRASGK-QLAVMFVDLD 417

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND  G  VGD++L+ +  +  +LL+  D +AR  G+ F       ++  +    A
Sbjct: 418 NFKKVNDQHGHKVGDELLLRVGEKFSQLLRPGDSVARFGGDEFVFCFAELSSKEEAEMLA 477

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
            ++R+S+     L     + + S+G A +     ++ +++ NA++ ++ +K  H+G    
Sbjct: 478 ESVRRSLTDHFILHGALASTSCSVGVAMYPQDGDSADQLIANADIVLFRSKAQHKGQVMF 537

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               ++       +++++L  A+E  EL + Y P +     +I G+EAL +W +   G +
Sbjct: 538 YDQSINEQVQYDFLLEDELKYAIERDELEVYYQPQVNPRTGQIEGVEALCRWTNGYLGAV 597

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ IAE    I AI  F+L +   D+  W  Q     + + INI+ K LL      
Sbjct: 598 SPMKFIQIAEISGQIFAIGDFVLRKACLDMK-WLAQTTGRTMPVSINISPKQLLQKGFVN 656

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           G+  +  +       I L  +E+V +   E  + ++  LR++G  ++LDDFGT  S LSY
Sbjct: 657 GVYCVTRELDIDCRLITLEITENVFIEELEEVKPIMEELRQLGFHISLDDFGTGFSSLSY 716

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S ++    +    +++++I+ +  +    ++A+ +        L ++
Sbjct: 717 LNALPISEIKIDRSFVSNMLSRSQSESLVKTIVAIGHSNRIIVVAEGVETVDQQIRLHQL 776

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD +Q    + P+    ++ +++ 
Sbjct: 777 GCDRLQGYLFSKPVSLKDLVNVIEA 801


>gi|149375903|ref|ZP_01893670.1| sensory box protein [Marinobacter algicola DG893]
 gi|149359783|gb|EDM48240.1| sensory box protein [Marinobacter algicola DG893]
          Length = 740

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/603 (21%), Positives = 261/603 (43%), Gaps = 23/603 (3%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +++   LD+ +     +   +  +  + + ++Q        +            A + + 
Sbjct: 140 ISLKGMLDHMVELNQTLSERLHQMDQLNWRLMQEQKQKKDRAAA---SKNLYEQAFMSTS 196

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           + +   D         P  + I G +     G     L  + ++ R +  +ILD    + 
Sbjct: 197 EGIAVLDREGKITAVNPSYSRITGYSEAEALGRYHEILD-MRVDKRQDSTSILDYLGVHN 255

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                 E   R  + + +  +  I  +   +G +  Y+ + NDIT  K++ + +    ++
Sbjct: 256 --HWSGEIYNRRRNGEVYPELRTISIIRADDGQVTHYVTVFNDITNLKETEQRLEELTWR 313

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG PNR  FLD+L+T+L L      +   V+VIDI+ ++ IN+  G   GD V+ + 
Sbjct: 314 DPVTGFPNRALFLDQLSTVLKLC-HHGGMATAVIVIDINNFRYINETYGFDCGDIVIQTF 372

Query: 596 TRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINL-LE 649
             R+       D +ARLSG+ FGI+L       +            +++++  P+    E
Sbjct: 373 AERLRNACHEDDSIARLSGDEFGIVLAPKQWTLDEAYRIALRLFERIQEALREPVPYRSE 432

Query: 650 REITVTASIGFASWTSSKITSSEM-LKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMI 707
             +T+ A+ G A + +       + L++AE A  +AK       V    +S     ++ +
Sbjct: 433 GALTIEATGGIALYPTESSDMPSLALRHAETAHRNAKESHRAVAVFEDSMSENIRRQMAV 492

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + +L  A+  +E+ +   P +   D E+ G+E L++W+HP+ G +   EF+  AE    I
Sbjct: 493 ESELTRAITENEIAMYAQPQLSP-DRELAGIELLVRWNHPERGLLGPGEFIPFAERTRQI 551

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++      +   +  +    +   INI++K + + +  E +  L++ + Y P+ 
Sbjct: 552 VALERHIVRECLGMLADMKADSRQ--LRCSINISAKHMAEEDFAETILRLVADSGYPPAL 609

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I    +ESV++ + +     +  +R +G + +LDDFGT  S LS L  +P   +K + S 
Sbjct: 610 ITFELTESVMVKDVDAVVEKMETIRSLGCTFSLDDFGTGYSSLSQLRRLPISEIKIDRSF 669

Query: 888 M--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM--GCDYIQDSHVASP 943
           +    S      I+  +  + +++   ++A+ +  +     L     G  Y+Q      P
Sbjct: 670 VLSALSDSTSADIVDMVKRIGESMNVRVVAEGVETQEHADFLKAFHPGV-YLQGYFFGRP 728

Query: 944 LGF 946
              
Sbjct: 729 APL 731


>gi|37680330|ref|NP_934939.1| signal transduction protein [Vibrio vulnificus YJ016]
 gi|37199077|dbj|BAC94910.1| predicted signal transduction protein [Vibrio vulnificus YJ016]
          Length = 831

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 218/445 (48%), Gaps = 6/445 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D  + ++S E +   A  D+LT +PNR     ++ + +         +  VM +D+D
Sbjct: 383 IRTDFKKLEQSQEQLAYQAKHDSLTKLPNRSLLEVQIVSGIQRCRASGK-QLAVMFVDLD 441

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND  G  VGD++L+ +  +  +LL+  D +AR  G+ F       ++  +    A
Sbjct: 442 NFKKVNDQHGHKVGDELLLRVGEKFSQLLRPGDSVARFGGDEFVFCFAELSSKEEAEMLA 501

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
            ++R+S+     L    ++ + S+G A +     ++ +++ NA++ ++ +K  H+G    
Sbjct: 502 ESVRRSLTDHFILHGALVSTSCSVGVAMYPQDGDSADQLIANADIVLFRSKAQHKGQVMF 561

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               ++       +++++L  A+E  EL + Y P +     +I G+EAL +W +   G +
Sbjct: 562 YDQSINEQVQYDFLLEDELKYAIERDELEVYYQPQVNPRTGQIEGVEALCRWTNGYLGAV 621

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ IAE    I AI  F+L +   D+  W  Q     + + INI+ K LL      
Sbjct: 622 SPMKFIQIAEISGQIFAIGDFVLRKACLDMK-WLAQTTGRTMPVSINISPKQLLQKGFVN 680

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           G+  +  +       I L  +E+V +   E  + ++  LR++G  ++LDDFGT  S LSY
Sbjct: 681 GVYCVTRELDIDCRLITLEITENVFIEELEEVKPIMEELRQLGFHISLDDFGTGFSSLSY 740

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S ++    +    +++++I+ +  +    ++A+ +        L ++
Sbjct: 741 LNALPISEIKIDRSFVSNMLSRSQSESLVKTIVAIGHSNRIIVVAEGVETVDQQIRLHQL 800

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD +Q    + P+    ++ +++ 
Sbjct: 801 GCDRLQGYLFSKPVSLKDLVNVVEA 825


>gi|170720347|ref|YP_001748035.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169758350|gb|ACA71666.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 754

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 229/442 (51%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L     + + R  VM +DID +K+
Sbjct: 276 LSQLDQARASLQQAAHYDALTSLVNRRGFNQVFAERLAEQNPEVH-RLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD +L  +   I    +  D++AR  G+ F  ++ S N   +    A  + 
Sbjct: 335 INDSLGHDAGDQLLKVIASHIKAATRSHDLVARFGGDEF-CVVTSLNGPDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + +  PI+L  R + +T SIG + +    +T+ E+LK+A+LA+Y +K  G N +  F   
Sbjct: 394 QRMKDPIDLGGRRMVMTTSIGVSIYPDDGLTAEELLKHADLALYQSKGSGRNSLHFFNSG 453

Query: 698 -SSFRSDRVMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +  + ++E+L +A+ E   L + Y PI  L   ++  LEAL++W HP+ G +S  
Sbjct: 454 LKNRATLELQLEEELRIALLEERGLRVHYQPIYDLRTGQVAKLEALVRWQHPQHGLLSPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L++L     D+           + + +N ++  L  + L + ++
Sbjct: 514 RFIGIAEANGLIVDLDLWVLRHACDDLAQLHRH-GFADLKLTVNCSAVTLGHDGLPKEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +   +P  ++L  +E+ +MG+ +R+  LL R+R  G+SL++DDFGT  S L+YL  
Sbjct: 573 MALFQAGLAPRHLELEVTENALMGDIQRTLSLLKRIRGQGVSLSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + S +    ++ K   I+++II MA  +   ++++ +      + L   GCD
Sbjct: 633 LPLDVLKIDRSFLQDVPASLKDREIVQAIIAMAHTLHLQVVSEGVETVEQHEFLAANGCD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   ++ P+    +  +L+ 
Sbjct: 693 YLQGYLLSRPVPLADLRPILER 714


>gi|221066912|ref|ZP_03543017.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220711935|gb|EED67303.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 824

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 116/586 (19%), Positives = 233/586 (39%), Gaps = 19/586 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           + +V L  +   + +L      +G+ S+ ER    +    D V   +         P   
Sbjct: 218 IGLVSLWVWNTWRLILLREQVQEGLNSEKERAETTLAALSDAVITTNAKGLINYVNPAAI 277

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRD-----NFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +LGL   +        +   +  D           ++         R +    VR  D+
Sbjct: 278 GLLGLQKQNYLDKPIKQVLQFYTMDASITSEGLLAQLVSETKESTVVRDEQTHWVRRTDH 337

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + +    M    G     + +  D++ +++ ++ I  NA  D LTG+ NR  F  R
Sbjct: 338 SIVPVKVLGSAMQ-REGQTSGAVFVLRDVSREQQYMDQISWNARHDTLTGLENRGEFERR 396

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L  +L            ++ ID+D++K IN+  G A GD+VL  ++R +   L+  D LA
Sbjct: 397 LQKMLTQ-GLHQVKPYALLYIDLDQFKLINETSGHAAGDEVLCEVSRMLQANLRETDCLA 455

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            + G+ F ++L +   S   +        +  +     E+ +    SIG        + +
Sbjct: 456 SMGGDEFAVLLENCPPSNVASIAEKLRLAAQQLQTTWGEKILRTGFSIGAVHVPGDAVNA 515

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYH- 725
           S++L+  ++A Y AK RG N V  ++            +     +  A++     L    
Sbjct: 516 SDLLRMVDMACYQAKERGRNKVFFYKAEDGIYSRYVSEMEWATRIRTALDEERFCLYAQS 575

Query: 726 --PIIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
             P+      +   +  E L++        ++   F+  AE   ++ +++ +++ +  + 
Sbjct: 576 IAPLQHSKSGKHGGMHFEVLLRLRDENGQILAPGHFIPAAERYGLMPSLDRWVISKTLQT 635

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +      A +      IN++   L D+ L E ++  +     +  ++    +E+  +GN 
Sbjct: 636 LAQQPGHAKLVE-TCAINLSGPSLDDDGLLEFVKEQLQLHAIAAQKLCFEITETSAIGNL 694

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
             +  L+  LR +G    LDDFG   S L+YL  +P D +K +G  +      +   A++
Sbjct: 695 SNATRLIQALRALGCRFALDDFGVGMSSLTYLKQLPVDYLKIDGGFVRDMLKDKGDHAMV 754

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             I  + + +    +A+ +      +EL  MG DY+Q   +A P  
Sbjct: 755 EMINRIGQTLGKKTVAEFVESREIAEELMSMGVDYVQGYAIARPKP 800


>gi|126090207|ref|YP_001041688.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155]
 gi|126174500|ref|YP_001050649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
 gi|125997705|gb|ABN61780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125999863|gb|ABN63933.1| hypothetical protein Sbal_4570 [Shewanella baltica OS155]
          Length = 749

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 130/591 (21%), Positives = 245/591 (41%), Gaps = 24/591 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATI- 437
           + +        LA+    +    + +R ++         +   +     +   P    I 
Sbjct: 165 LDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIV 224

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           L       +   + +L     N+       L           Q E      + +  ++ +
Sbjct: 225 LPQDIDIANFNPKMFLSASQPNELVGLFEHLAQ-----DKMWQGELVGLRGNGEEFYLDL 279

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +      NG    +  + +DI+E+KK+ + I   A  D+LTG+ NR +    + +++  
Sbjct: 280 IVTTFREPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSLITS 339

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +       + M++D+D +K++ND  G   GD +LV + R+I E L    + ARL G+ F
Sbjct: 340 DSLTPG--FSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEF 397

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L    N  ++A  A  + K +A    L   + +  + SIG A +    +   ++L  
Sbjct: 398 ALLLPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNC 457

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY +K  G N    F      +      +   L  A++     L Y PI+      
Sbjct: 458 ADQAMYISKANGRNRYHFFTEQMQLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGL 517

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IV  E L++W H     I   EF+ IAE   +I  I   +     + I+  +      PI
Sbjct: 518 IVRAEVLLRWQH-DGQFIPPDEFIPIAENSGLIVDIGRDVRLGAMQTILEMQAH--NWPI 574

Query: 795 FILINIASKDL----LDNELCEGMQAL---ISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            + +N+++ +     L +   +   A+   +  T +   R+ L  +ES++M        +
Sbjct: 575 NLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDV 634

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905
           L  LR  GI ++LDDFGT  S LSYL   P D +K + S +    E +   A++ +I+ +
Sbjct: 635 LNGLRIKGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRL 694

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  ++ T+ A+ +  E  +K +       IQ      P+   +   LL ++
Sbjct: 695 SHALDLTVTAEGVETESQLKFVMSNHIQEIQGYLFYKPMPKAAFFALLAKQ 745


>gi|332992261|gb|AEF02316.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 674

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/443 (28%), Positives = 216/443 (48%), Gaps = 9/443 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KK+   +   A++D+L+G+PNR+   + +  +   S   +    +++ +D+D +K++N
Sbjct: 221 ELKKANIELRDQAYKDSLSGLPNRRYIYELINEV---SKNSETHTFSLLFLDLDGFKEVN 277

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD ++V   +RI  ++   D LARL G+ F I L +      I   A  +R  
Sbjct: 278 DTLGHDYGDLLIVDAAKRIQAIINKGDTLARLGGDEFTIFLENVVEPCVIESIANRIRYE 337

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  + +  + +TASIG +S+     ++ E++K A+LAMY AK  G N    F  S  
Sbjct: 338 FNKPFLIRDESVHITASIGASSYPECGKSAEEIMKKADLAMYDAKSSGRNCYRFFHASML 397

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   +  DL  A++N EL L Y PI  +   +I   EALI+W HP  G IS  +F+
Sbjct: 398 EKLEAKKLVISDLRQALKNDELELFYQPIYNIETRKIDKAEALIRWHHPAKGVISPQDFI 457

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL-DNELCEGMQAL 817
            IAEE  +I  +  ++L+    ++  +R Q   P   + IN+++  L  ++     +   
Sbjct: 458 PIAEENGLIVELGNWVLQNAIANVRVFR-QNLCPEFCVNINVSAAQLKPEDNWLSELILS 516

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +       + I +  +E+ +M + ++    L  L++ G+ + +DDFG   S LSYL  + 
Sbjct: 517 LDTANLGANAIAIEITETALMTDRKKVVEDLRLLKEKGVEIAIDDFGVGYSSLSYLQQLK 576

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +   G       + ++I  MAKN+   ++A+ I  EI ++ LT  GC + 
Sbjct: 577 IDIIKIDKSFVQQLGIDSAGTTLCKTIAQMAKNLNIKVVAEGIEDEIQLEMLTEFGCHFG 636

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q   +A P              P
Sbjct: 637 QGYFIAKPAQAKKFETFFHSFKP 659


>gi|254500077|ref|ZP_05112229.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222441375|gb|EEE48053.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 809

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 249/561 (44%), Gaps = 15/561 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +    +R +     +  +++  D     +  +    +  G A  ++ G  R    ++
Sbjct: 227 EAKLLKANKRLAFLYHNTPVMLYSIDHEDRILNVSDYWLSATGYAREAVIG--RKLREFL 284

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +  + +               +       AD     ++I      + +    + + + 
Sbjct: 285 QPDCTEEYLDSRKRLFSAEHMSFEITSVFIRADGSPLDVLITEIRDFDKSSTGRQSLSVM 344

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI + K +   IL  A  D LTG+ NR  F  R+   +D +  D      V+  D+D +
Sbjct: 345 ADICQLKAAEAKILHQARTDFLTGLLNRHGFTHRMNEAIDAADADH--EIAVLFFDLDNF 402

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND LG   GD VL  +T+R+ +LLK  D   R  G+ F I+L   +   +  D A  
Sbjct: 403 KWVNDNLGHFAGDQVLKLVTQRVSKLLKTDDCFGRFGGDEFAILLSGGDVRARAVDLATR 462

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + +  PI+L  R++ ++ASIG + +  +  T+ ++L+ +++AMY  K  G N    F 
Sbjct: 463 INQVLKQPISLSGRQLQISASIGISYYPENADTADDLLQTSDVAMYRQKGSGRNGHCVFD 522

Query: 697 VSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           V   +     ++  E +  A+++    L Y PI+ L +  IVG E L++  HP  G +  
Sbjct: 523 VQFGQEAARQLEVKELISEALKHDWFELYYQPIVHLNERSIVGFEGLLRLVHPDMGILPP 582

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            E++ +AE+   I  I   +L    R +     Q +    ++ +N+++      EL + +
Sbjct: 583 REYITVAEQTGSILEIGDRVLRLGMRALKELEQQPDWQDAYVTLNLSAAQFRR-ELPDTL 641

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +++      R+ L  +E+ +M N      L+  +RK+G +L LDDFGT  S LSY+ 
Sbjct: 642 ARYLAQHDLVGDRLVLEITETTLMQNSADLDGLIEDIRKLGCALALDDFGTGFSSLSYMN 701

Query: 875 YIPFDTVKFNGSLMTGS--------TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            +  DTVK + S + G         + K   ++ +I+ +++ ++ T+IA+ I  E  +  
Sbjct: 702 RLHVDTVKIDRSFVQGLGDTSNKDASGKTAPLVEAIVGLSEKLDLTVIAEGIETEEQLGS 761

Query: 927 LTRMGCDYIQDSHVASPLGFN 947
           LT+    + Q          +
Sbjct: 762 LTQRNVRFGQGFLFGEAKPLD 782


>gi|168239417|ref|ZP_02664475.1| bacterial signalling protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737523|ref|YP_002116336.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194713025|gb|ACF92246.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197287899|gb|EDY27287.1| bacterial signalling protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 699

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEASDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|220906815|ref|YP_002482126.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219863426|gb|ACL43765.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
          Length = 584

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 226/433 (52%), Gaps = 9/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +    FQD LT +P+R   LD+LT +L+     D+    ++ +D D++K IN   
Sbjct: 153 QRTAQLHTMVFQDALTKLPSRIFLLDKLTDLLN----SDHQSLALIYLDCDQFKMINGSF 208

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +++++ +R+ + L   D+LAR+  + F  ++   ++  ++      + +    
Sbjct: 209 GHAVGDQLIIAIAQRLEQYLAPGDVLARMGEDEFCFLVNHIDSPTQLESLIQNILQGFQA 268

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
              + + EI ++   G    TS      E+L+ A+ AMY AK RG    + F+     + 
Sbjct: 269 NFTVADCEIFMSVCAGATYVTSRHQQPEELLQEADTAMYQAKLRGKGSYQLFQHQMHLTI 328

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R++++ DL  A+++ E  L Y PII+L  + +VGLEALI+W HP+   +   EF+   
Sbjct: 329 LNRLILENDLQRALKHEEFILYYQPIIQLDTQTLVGLEALIRWQHPERNLVPPGEFIPCM 388

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  + L  L +  + + +W+ Q     + + +N++++      L + +  ++++T
Sbjct: 389 ETTGLIVPVGLMSLTQACQQLSTWQQQ-GWTDLTLSVNLSTRQFACPSLLDDIDRILAET 447

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +PS++KL  +ES +M N E +  L   LR   I +++DDFGT  S L+YL  +P D++
Sbjct: 448 AINPSQLKLEITESAIMDNAEMAIGLAKELRSRQIQISIDDFGTGYSSLAYLHCLPVDSL 507

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++      +   I+++II +   +   +IA+ I     ++ L ++ C++ Q   
Sbjct: 508 KIDRSFVSQIQTHNRNYQIVKTIIALGHQLNLAVIAEGIETSQQLEWLKKLDCEFGQGYL 567

Query: 940 VASPLGFNSILKL 952
            + PL    I +L
Sbjct: 568 FSHPLPATEIERL 580


>gi|168822711|ref|ZP_02834711.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205340897|gb|EDZ27661.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087836|emb|CBY97600.1| Uncharacterized signaling protein PA1727 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 691

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 220/436 (50%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGSSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 NIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P     I + +++
Sbjct: 669 LGKPRTAEEIARDIRD 684


>gi|307299972|ref|ZP_07579757.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|306904861|gb|EFN35444.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 564

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 13/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+PNR+ F D+L   L      +  R  +M ID+D +K IND LG   GD
Sbjct: 132 LHQATHDVLTGLPNRRQFSDQLRGAL---PVPNGARLALMQIDLDDFKPINDTLGHGAGD 188

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     RI  +L+  +   RL+G+ F +I    +   +    A A+  +   P  +  
Sbjct: 189 AVLKMAADRIRSVLRDREFAYRLAGDEFAVIQWRADQPSEAERLADALINAFKEPFTVEG 248

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             + V AS+G A   +      +++K A++A+Y AK  G     +F  S          +
Sbjct: 249 INVFVGASVGIAVAPADGNEVEQLMKAADIALYAAKKDGRGRSSTFTRSMLIVLEQREML 308

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++  + +L Y P+++     +VG EAL++W HP  G I  + F+ +AE   ++
Sbjct: 309 RRSLRTALQEGQFFLEYQPLVKPSS-SVVGFEALLRWRHPLVGIIPPNVFIPMAEADGLM 367

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LER  R  + W          I +N++  + L   L + +   +        R
Sbjct: 368 SDIGRWLLERACRAAMDWPSH-----FTIAVNLSPAEFLHEGLTDRVAQTLDLVGMRADR 422

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV++     +   L  L  +G+ ++LDDFGT  S LSYL   PFDT+K +   
Sbjct: 423 LELEITESVLLERTINNLDTLNTLNVLGVQISLDDFGTFYSSLSYLKNFPFDTIKIDQYF 482

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      EK   I+RSII +A  +   + A+ +        L + GCD +Q   +  P+ 
Sbjct: 483 IRDLERDEKSQTIVRSIIALAHGLGMNVTAEGVETAEQAIWLQKEGCDRLQGYFLGVPMR 542

Query: 946 FNSILKLLKE 955
             +I   L++
Sbjct: 543 AEAIADFLRK 552


>gi|110679489|ref|YP_682496.1| sensory box/GGDEF family protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455605|gb|ABG31810.1| sensory box/GGDEF family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 785

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/638 (21%), Positives = 274/638 (42%), Gaps = 32/638 (5%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
            ++G +       A +     F+   +  +      D           L V+++      
Sbjct: 152 LVRGPDGIRFYAGAPLRTADGFVVGTLCLVDGVPHLDFGSEDRALLAKLAVLVV------ 205

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS------ 442
            ++      Q       +       S DI W+ D+       +    T+ G+++      
Sbjct: 206 DLMEGRASHQASLEAKSKLEDFTTASLDIFWETDVEHRFTRLSS--ETMPGMSASANPWD 263

Query: 443 ---GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               SM G  R W        R+ +R+ L   +  R+      +  +  D +  +  +  
Sbjct: 264 SGLESMVGHKR-WDILKVDTTREPWRSHLK-LLEARKPFRDLRY-AKEFDGKLMYFSVSG 320

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           RP+ + +G  L Y G   ++TEQ++S       A  D LTG+ NR+ +   L   L+   
Sbjct: 321 RPVFDKDGAFLGYRGATQNVTEQEQSRLEAERLANSDPLTGLANRRCWNAALRERLN--- 377

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            D+     +++ D+D++K IND LG AVGD +L+ + +RI        + ARL G+ F +
Sbjct: 378 ADEIPPTGILLFDVDRFKDINDALGHAVGDRLLIEIAKRIVNCSLKTSLAARLGGDEFAL 437

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++  +N        A  + +++  P  +    + V  SIG     + +     ++ +A+L
Sbjct: 438 MIEGKN--KDTVRSADCILQAMKQPFEIDGHNLHVELSIGIKLVGTREFECDRIMVDADL 495

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+  AK +G +    +  S  + +     +      A++N+E  L + P IRL ++ +VG
Sbjct: 496 ALRTAKMQGRSRHVVYEPSMRKENDSRITLTAQFERALQNNEFELHFQPQIRLSNDTVVG 555

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +E+L++W+HP+ G +  ++F+   E           +++   +    W+D     P+ + 
Sbjct: 556 VESLLRWNHPERGLLFPNQFLNALETSAYDIPAGQQVIDLACKQARIWQDLG--TPVRVG 613

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN+++  L  + L + +   +++   +P+ I++  +E V +GN E+   +L  +R +G++
Sbjct: 614 INVSASQLYGDNLPKVLNDAMTRHGTAPALIEVEVTERVALGNVEKITSVLEAIRDLGVT 673

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           +  DDFGT  + LS L   P D VK +   +T   +      +   +I +  ++   +IA
Sbjct: 674 IAFDDFGTGFASLSSLMQFPLDRVKVDQRFITDLHKNPANTRLTSGLIRLCHSLGFEVIA 733

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +        L +  CD +Q    + P+        L
Sbjct: 734 EGVEKHAHETFLRKQNCDEVQGYLYSKPVSAQKTTDFL 771


>gi|222081425|ref|YP_002540788.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221726104|gb|ACM29193.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 695

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 226/458 (49%), Gaps = 14/458 (3%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                   D    ++S++ +   A  D LTG+PNR SF D L   ++ +   +N +  V+
Sbjct: 229 TGVASYMIDEHATQESIQKLQHMALNDLLTGLPNRGSFADHLNQEMEQAER-ENAKLAVI 287

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D++K+IND+ G   GD  L ++ RR+  L+K  + +AR+ G+ F  +    N   +
Sbjct: 288 GIDLDRFKEINDLRGHKAGDQALKAIGRRLARLVKDGEFVARVGGDEFAAV-KRFNGQNE 346

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + DF   + K++  PI + + E    ASIG A +         ++ NA+LAMY AK   G
Sbjct: 347 LLDFVARLEKTMFEPIRIDDFETVTGASIGVAVYPDDGRDQERLVSNADLAMYRAKADVG 406

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             V  +         +R  + +DL  AVE  +L L Y     +   E+ G E L +W+HP
Sbjct: 407 RAVCFYESRMDEAARERHTLAQDLRRAVELDQLELHYQVQTSVRTGEVCGYEVLARWNHP 466

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  +EF+ IAEE   I AI  ++L    +   SW          I +N++      
Sbjct: 467 ERGKVPPAEFIPIAEESGTILAIGEWVLRTACKQAASW-----DKRYKIAVNLSPVQFAH 521

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L   +  ++ +T  SPSR++L  +ES ++ +  R+  +L +++ +G+++ +DDFGT  
Sbjct: 522 ADLARLVHEILLETGLSPSRLELEITESTIIADKTRTLHVLRQIKALGVTIAIDDFGTGY 581

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L   PFD +K + S M+      +  AI+R+++ + +++E  ++A+ +     ++
Sbjct: 582 SSLDTLRSFPFDKIKLDRSFMSEVEGSIQAKAIVRAVLTLGRSLEIPVLAEGVETNHQLE 641

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI---LKLLKERFPLV 960
            L   GCD  Q   +  P     I    + +   FP  
Sbjct: 642 ILKVEGCDEAQGFFLGRPKPVGQIFLSEETIDAEFPAS 679


>gi|332529778|ref|ZP_08405732.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
 gi|332040799|gb|EGI77171.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
          Length = 657

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/444 (28%), Positives = 218/444 (49%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE + + + +   A+ D LTG+PNR+  +DRL      SA       T++ +D+D++K I
Sbjct: 213 TELQHTAQALNRLAYYDELTGLPNRRLLIDRLNQA-QASARRGTQGGTLLYLDLDRFKNI 271

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFA 634
           ND  G A GD +LV++ +R+  LL+  D +ARL G+ F I+        +  +      A
Sbjct: 272 NDARGHAAGDALLVAVAKRLSGLLREEDTVARLGGDEFVILSPHSPMDAQGEARAARVVA 331

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +R+S   P  L  +  +  ASIG          + E+L++A+ AMY AK  G N V  
Sbjct: 332 DKVRESFGQPFMLDGQPYSTHASIGVVVLGGMAQGAEELLRDADTAMYRAKSAGRNRVAY 391

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   +     D++ ++ DL  A+   +L L     +      IVG+E L++W HP  G I
Sbjct: 392 FEAGMQQEVEDKLKLEHDLMHAITQDQLALHLQSQVD-AVGAIVGVELLLRWTHPTLGAI 450

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             S F+ IAEE  +I  +  ++LE+  R     R+  +  P+ + IN++ +     +  E
Sbjct: 451 PPSRFIPIAEESNLILNLGDWVLEQGCRIQRQLREAGH--PVPVSINVSPQQFHQPDFVE 508

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
              AL+ +    P+++    +E +++ + E++   +  L + GI  ++DDFGT  S L+Y
Sbjct: 509 HALALLDRQHADPTQLIFEVTEGLLLDDLEQTIERMEALAERGIRFSIDDFGTGYSSLAY 568

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S +T +       AI+  I+ MA+++E  ++A+ +        L+  
Sbjct: 569 LKRLPLHELKIDRSFITDTPHDPGDTAIVEMILSMARHLELKVVAEGVETRAQSDFLSSH 628

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           GC   Q    A P   +   + L 
Sbjct: 629 GCTAQQGYLHAKPQPLD---RWLA 649


>gi|262368346|ref|ZP_06061675.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262316024|gb|EEY97062.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 699

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/574 (22%), Positives = 242/574 (42%), Gaps = 18/574 (3%)

Query: 395 YFSQGIFSDGERQSL------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
              QG+    E  +L       +  S D +   +              +L L S  +   
Sbjct: 132 DIHQGMKIYIESLALLRAHSDMLNASVDCIIVVEPDGTVTHMNKSACVML-LGSADVKDF 190

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +W+  +    R   +  L      +  R      +  +D + ++    + P+ + +G+
Sbjct: 191 GMSWVELLPPAVRKKAKKALHDAGQGQISRFNG---MSLSDGKVYYWDNVLTPVLDVDGE 247

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + ++ DIT Q  + + +   + +D LTG+ NR++F +++   L  SA D   +  V
Sbjct: 248 TQSILCVSRDITLQYLTEQKLKQGSERDELTGLNNRRAFKEKIRK-LYSSARDKKQKLAV 306

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M++D+D +K IND LG A GD +L  L++R+ ++L+    LARL G+ FG+I+    +  
Sbjct: 307 MLMDLDHFKTINDTLGYAAGDHLLRILSKRLKQILEGRAFLARLGGDEFGVIIPHVQDIG 366

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++   A  + + + +PI      I    SIG   +       SE+LK A+ A+   K +G
Sbjct: 367 ELNQIAQQILQQLEIPITFSGNYINGGMSIGCGLYPDDANDLSELLKCADTALNDVKAQG 426

Query: 689 GNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
              +  F    F + R   ++       + N  +   + P + L  E I+G EAL++W  
Sbjct: 427 RGGMRMFDQDMFNAVREQSEQLNCAHQIIRNVAIEAFFQPKVCLDSERIIGYEALLRWRD 486

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            +    S +       +  +   I   M  ++ + I  W  +     + I IN A  + +
Sbjct: 487 DQNNIQSPARIAAAFNDYELSSRIGEIMQHQVFKQITEWWAKGLHI-VPISINAAPVEFM 545

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGT 865
            +   E     +         +++  +E  +     E     L +L+  G+ + LDDFGT
Sbjct: 546 RDNFAEIFLKRLKSYRIPSKFVEIEVTEYHLAERGYEYVVRALKKLKANGVRIALDDFGT 605

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S L++L   P D +K + S +   ++ +   AI+  +  +   +   I+A+ I  E  
Sbjct: 606 GHSSLTHLRDYPVDIIKVDCSFVQRLSDDKSIYAIVEGLAKLGPILSMDIVAEGIETETQ 665

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956
           ++ L  MGC   Q    + P+       +LLK  
Sbjct: 666 LQLLRDMGCHIGQGYLFSPPVCAQQAEMQLLKLH 699



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 7/97 (7%)

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +     N + YIH  D       L   +       +   R+R    Q+HW +++     
Sbjct: 63  DLSADSFNLVEYIHPEDVPALDEFLHQPIIAEL-TFEKTCRIRNHQGQYHWFLVQGEMDR 121

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN--AFQDNL 538
           ++ G    +     DI +  K     L    A  D L
Sbjct: 122 STAG----FQLSCTDIHQGMKIYIESLALLRAHSDML 154


>gi|114561948|ref|YP_749461.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333241|gb|ABI70623.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 681

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 218/436 (50%), Gaps = 10/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   A+QD LT +PNR+ F ++L +++D     D++   ++ ID+D +K+IN
Sbjct: 240 ELENANSQLHEYAYQDGLTLLPNRRYFYEKLQSLIDT----DHMVFALIFIDLDGFKEIN 295

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L  + +R+   ++  D +ARL G+ F +I+   ++    A  A  ++ S
Sbjct: 296 DSLGHEYGDRLLHQVAKRLRGCVRDHDTVARLGGDEFTLIIEDVSDLEHAASIAEKVKSS 355

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +   I++ E ++ VT SIG   + +       ++K+A+ AMY +K +G N  E F     
Sbjct: 356 LMQCISIEEVQVNVTGSIGLTFYPADGQNVEALVKHADQAMYLSKSKGRNRYEFFSHAIE 415

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               ++  + E++ +A++  +  L Y PI       +   EALI+WDHP+ G I  +EF+
Sbjct: 416 EQAIEKRRLIEEIRIALKLGQFVLFYQPIFDQCGVTVTKAEALIRWDHPQRGLIGPNEFI 475

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQAL 817
            +AE+  +I+ I  ++  +   D   +   +    + + +N +   +    L  +     
Sbjct: 476 PVAEQNGLIEEIGNWVRNQAIEDAAHFYQLSGN-KMQVSVNTSPLQIDHEGLWVDEWILA 534

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +K       + +  +E+ +M      +  + RL   GI + +DDFG   S L+YL  + 
Sbjct: 535 CNKFNLPRDTMIIEVTENTLMDPDSPIQQQMLRLNNYGIDIAIDDFGVGYSSLAYLQRLD 594

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      E  IA++R+II MA +++  ++A+ +      + L ++ CDY+
Sbjct: 595 IDILKIDRSFIKHMESNENSIALVRAIITMAHHLKVKVVAEGVETIGQHQLLQQLSCDYL 654

Query: 936 QDSHVASPLGFNSILK 951
           Q    A P+   + + 
Sbjct: 655 QGYLFAKPMPTQNFID 670


>gi|332716028|ref|YP_004443494.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325062713|gb|ADY66403.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 772

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 228/461 (49%), Gaps = 19/461 (4%)

Query: 503 SNSNGDILRYIGIAND-ITEQ------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +  GD+   I    + + E+      +   + +   A  D LTG+PNR   +  L   L
Sbjct: 288 RDEIGDMATAIETLREAVLERGRLRQIRDMAQQLEHMAHHDALTGLPNRVLLMKTLENRL 347

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           +  +T       VM++D+D++K +ND LG A GD +LV++  RI  +L   D+++RL G+
Sbjct: 348 EHLSTSGQ-PFNVMLLDLDRFKAVNDTLGHAAGDALLVAVASRISSVLGENDMVSRLGGD 406

Query: 616 RFGIILISENN-SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            F II    +N        A  +  +++   +L    I+V  SIG A       +++++L
Sbjct: 407 EFAIIQAVTDNCREDAGALAKRVVHAVSRSFSLEGSHISVDTSIGIACAPDHGNSATQLL 466

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+L +Y AK  G      +   +      +  ++ D+  A+EN E  L Y P++ L  
Sbjct: 467 QHADLGLYRAKSMGCGFFVFYEPGMDMAAQHKHALEIDMKSALENHEFELYYQPVVNLES 526

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IV  EAL +W H K G I+   F+ +AEE   IK +  ++L +   D ++W       
Sbjct: 527 GRIVAYEALARWRHSKLGIITPDRFITLAEENNFIKPLGEWVLAQACMDAMTWPR----- 581

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I + +N+++  L ++++   +   +  + +   R++L  +E+ ++   + S   L  L+
Sbjct: 582 DIRLAVNLSAVQLCNDDIVPIVDGALKASGFPAERLELEVTETAMLER-DNSARALKLLK 640

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIE 910
           ++G+ L LDDFGT  + LS L ++ FD +K +   ++G  E     AI+ +II MA+ I 
Sbjct: 641 EMGVRLVLDDFGTGYAGLSTLTHVAFDKIKIDREFVSGLPENPMCSAIVNTIIDMAEQIG 700

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             + A+ +  +  ++ L   GCD  Q  + A P     ILK
Sbjct: 701 LKVTAEGVEDKKQVEALKLSGCDEAQGYYFAEPAPLARILK 741


>gi|258655343|ref|YP_003204499.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nakamurella
           multipartita DSM 44233]
 gi|258558568|gb|ACV81510.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nakamurella
           multipartita DSM 44233]
          Length = 626

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 209/440 (47%), Gaps = 8/440 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  + E +   A+ D LT +  R+   D L   L            V+ ID+D+ K +N 
Sbjct: 167 RVAAEERLHYLAYHDELTTLATRRGLTDHLAKRL---KPGAPGPVAVIFIDVDRLKALNS 223

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG A GD  L +L  R+ E +    +LARL G+ F  +++   +  +  + A  +R + 
Sbjct: 224 FLGHAAGDQYLHTLAHRLREAMPNDQLLARLGGDEFVSVILGPADEERARECAERLRIAA 283

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +   EIT   S+G A         SE++  A+ AM  AK  GGN V  F     R
Sbjct: 284 NQPVQVGGEEITRGVSVGVALGVPGAADVSELMNQADQAMLQAKGNGGNAVCFFTAEMRR 343

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            + +   I+  L  AV N  L L + P + L    I G+EAL++W HP  G +  S F+ 
Sbjct: 344 QNEIRTDIELHLVTAVRNDSLVLFFQPQVALESGTIDGVEALVRWPHPNLGLLPPSAFID 403

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALI 818
           + E   +   +  +++E   R + +W D+     P+ + +N++  +LL  +    ++  +
Sbjct: 404 VIETTNLAGELGRWVIESGCRQLKAWHDRFPKDEPLTMSVNVSPAELLTTDFVATVRRTL 463

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T      + L  +E  ++ + E++ L L  L++IG+ + +DDFGT  S  + L  +P 
Sbjct: 464 VETGLDGQYLTLEITEKALVRDTEQALLTLRGLKEIGVKVAIDDFGTGYSSFAQLRALPV 523

Query: 879 DTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + ++  G     +AI+RSII +A   +  I+A+ +  E+    L  +GC   Q
Sbjct: 524 DELKIDRTFVSELGHNSNDLAIVRSIIGLADAFDLEIVAEGVETEVAAATLIALGCRRAQ 583

Query: 937 DSHVASPLGFNSILKLLKER 956
                +P     +  +L +R
Sbjct: 584 GFLFGAPRSAADLTTILDQR 603


>gi|226356807|ref|YP_002786547.1| diguanylate cyclase [Deinococcus deserti VCD115]
 gi|226318797|gb|ACO46793.1| putative diguanylate cyclase/phosphodiesterase; putative membrane
           protein [Deinococcus deserti VCD115]
          Length = 757

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 219/426 (51%), Gaps = 5/426 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +   A  D LTG+ NR   +  L   ++ +  D      V+ ID+D++K +N
Sbjct: 313 EARQLQRDLDLQAKHDPLTGLVNRGHLVQLLDYAIERA--DSRYGVAVLFIDLDRFKSVN 370

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD++L ++ +R+   ++  DI+AR  G+ F ++     ++  + D    + ++
Sbjct: 371 DIYGHTAGDNLLRNVAQRLQNEVRRNDIVARQGGDEFVVVATGVLHASAVHDLGRRLLQA 430

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           ++ P  +    +T++ASIG     +  + +SE L+NA++AMY AK RG N V+ +   + 
Sbjct: 431 LSRPYTVGTESVTLSASIGVTLCPAESVDASEALRNADIAMYEAKRRGRNSVQFYNQHIE 490

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S+   I+  L  A+E  EL +VY P++ L   ++   EAL++WD P  G +S + F+
Sbjct: 491 KQTSEIHRIEVQLRGAIERGELRVVYQPLVSLDSRQVRSAEALLRWDSPVLGPVSPAVFI 550

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I AI  ++L+     +  WR     P + + +N++      ++    ++A +
Sbjct: 551 PVAEQRGLIHAIGSWVLDTAMGQLSVWRA-TGHPDLSVSVNVSPLQFERDDFIAQVRAAL 609

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +     S + L  +E  ++ + + S + L +LR +GI + LDDFGT  S L+YL  +  
Sbjct: 610 DRHHLPGSALTLELTEGSLLTDFDASNIKLRQLRALGIQVALDDFGTGYSSLAYLRTLHV 669

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D VK + S +    +  +  + +I+ +A +++  I+A+ I        L  + CD  Q  
Sbjct: 670 DIVKIDRSFIWAIQDDGLTFVEAIVRIAHHLKLRIVAEGIETLEQCSSLQHLSCDLGQGY 729

Query: 939 HVASPL 944
             A PL
Sbjct: 730 LFAKPL 735


>gi|251795100|ref|YP_003009831.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Paenibacillus sp. JDR-2]
 gi|247542726|gb|ACS99744.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Paenibacillus sp. JDR-2]
          Length = 827

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 221/443 (49%), Gaps = 10/443 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             +  +K++   I   A  D +TG PNR  +   + T      T  + +  ++ ID+D++
Sbjct: 385 RMVDFRKEAEHLIQHQATHDLVTGFPNRYGYSRHVET-----RTGSSGQFALLYIDLDRF 439

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IN+ L   +GD +L  +  RI E+      + R  G+ F ++L   +   +    A  
Sbjct: 440 KIINETLDYTMGDMLLKQVGNRIVEVTGQSGRVFRFGGDEFVVLLDEISYLGQATAVAAR 499

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAK-HRGGNHVES 694
           +   IA PI +  R   +TASIG +     +  +   ++K +++A+Y AK  R    + S
Sbjct: 500 ILSVIAEPIKMKGRLFYLTASIGMSVQQEWTPESGDRLVKESDIALYVAKKQRNTYKLYS 559

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   S  ++++  +  A+E+++  L Y P + +    I G+EAL++W HP++G +S 
Sbjct: 560 PMMNDVPSKELILENSMFEALESNQFMLHYQPKLEIRTGRIYGVEALLRWKHPEFGMVSP 619

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ IAE+   I  +  ++L    R +  W        + + +N++       ++   +
Sbjct: 620 LEFIPIAEKTGFIILLGEWVLRSACRQVKQWEQMGLDSVL-VSVNMSMLQFQQKDIVSSI 678

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +++I++    P +I+L  +ES+ M NPE +  +L  L+ +G+ L+LDDFGT  S LSYL 
Sbjct: 679 KSIIAEAGVRPEQIELELTESIFMENPEHTLRILHELQGLGLKLSLDDFGTGYSSLSYLQ 738

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            IP   +K + S + G     ++  I RSII +A N+   ++ + +    +++ +    C
Sbjct: 739 NIPIHYLKLDKSFIRGIVTDIRKQMIFRSIIVIAHNLNMKVVTEGVETAEELQIIKEHNC 798

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D +Q    + P+     ++L + 
Sbjct: 799 DLMQGYLFSPPVTPERFVELFRS 821


>gi|56750182|ref|YP_170883.1| hypothetical protein syc0173_c [Synechococcus elongatus PCC 6301]
 gi|56685141|dbj|BAD78363.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 712

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/680 (21%), Positives = 292/680 (42%), Gaps = 16/680 (2%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           +T + +    +L         +   +  +  A      +   +    +G    + L P  
Sbjct: 42  LTLTFVLYPVLLGISLLALLGLALRVGLLGSAIGATLLSVISLLATRRGLGPFIRLAPDN 101

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--VIQHVLATGYFSQGIFS 402
             + +  +   +++   +              L   +   T  +I  + A     + +  
Sbjct: 102 PYLAVILLMFSISLAVHIVALQYAELRRQRDHLQATINEQTNYLIDEIEALDKTQKELED 161

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR- 461
             +     +  +  IV   D+    +   P    + G     + G   +W   I   DR 
Sbjct: 162 ARDFAENLIQTANAIVLLLDLNGCILELNPTAEEVTGYQRSEILGK--DWFESIVPRDRY 219

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +      +          +E  +     +  +++ R   +   N + + +I    DIT+
Sbjct: 220 PHVWEQFKNCSSEEI-PHNFENPIITKSGKERYIVWRNSKIF-KNNECVGFISFGIDITD 277

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++ + + +   A  D LTG+ NR    ++   +L L+     +   V+ ID+D++K IND
Sbjct: 278 RRDNEKALERQACYDFLTGLANRFLLQEQGQELLLLAKRSQEM-LAVIFIDLDRFKDIND 336

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD VLV + +RI + ++  D++ARLSG+ F +IL +  ++   A  A  +++ I
Sbjct: 337 NFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPN-TDAQGAATLAQKLQQQI 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
             PI + +R I +T S+G + +         ++K A+ AMY  K  G +    F  +   
Sbjct: 396 TPPIAIGDRSIQLTTSLGISLFPVDGDDLEILIKKADTAMYSIKEGGRDAFSFFTATIGQ 455

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ I+  L  A+ N +  L Y P I L D+ I+GLEAL++W HP  G ++   F+ 
Sbjct: 456 RLQERLEIESGLRSAIANQQFELFYQPQISLQDDSIIGLEALLRWHHPHLGLLTPKSFLP 515

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IA E+ +++ I  ++L+        W+ Q     + I IN +   +   E C  +  +++
Sbjct: 516 IAIEIGLMEEIQQWVLKTACTQNAVWQAQGLK-SVPIGINFSGFQIQ--EFCPQIFEILN 572

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P  ++L  +E+++       +  L +L+ +G+ +T+DDFG   S L+ L     +
Sbjct: 573 ETTLRPQYLELELNEAILADPDSGLKQGLIQLKNLGLKMTVDDFGCSDSTLASLQNKGLN 632

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+      +    I+ +II +   +E  ++A+ +  E   + L    C  IQ 
Sbjct: 633 RLKIDASLIQALEVDQAIQTIVSAIIDLGHKLELRVLAEGVETEFQRQWLQEHQCHEIQG 692

Query: 938 SHVASPLGFNSILKLLKERF 957
             V  PL    I  +L+E+ 
Sbjct: 693 YLVYLPLPAEDIPAILREQQ 712


>gi|294339176|emb|CAZ87530.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL
           domains) [Thiomonas sp. 3As]
          Length = 934

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 199/426 (46%), Gaps = 8/426 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+ NR    ++L  +L  +         ++ ID+D +K +ND  G A GD 
Sbjct: 503 HQATHDSLTGLLNRHGLHEKLDALL--APGQAAAPLALLYIDLDNFKDVNDSRGHAAGDA 560

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L   + R+   L+   I+AR  G+ F ++L   + +   A     +R ++  P  L   
Sbjct: 561 LLCQASERLRTRLQANGIVARQGGDEFTLVLPLADAATAQATADAMIR-ALREPFELAGG 619

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708
            + V AS+G A         +E+L+ A++A+Y AK  G    + F     +       + 
Sbjct: 620 PVQVGASVGIALCPQHACERNELLRCADIALYAAKAYGRGRAQLFNPTLDAEARTLAQLL 679

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+   E    Y P +   D  I   EALI+W HP+ G +    F+ +AE   +I 
Sbjct: 680 ADLRQALVRGEFVAHYQPRVNAGDGRITSAEALIRWHHPQRGLLFPDAFIAVAESYGLIA 739

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L+   + +  WR +       + +N+++      EL   +Q  + +    P+ +
Sbjct: 740 PIGRWILDAACQQMAQWRREGIDIA-RVSVNVSAVQFESGELVGQVQNALERHAVPPATL 798

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+++   +     L  LR +G++L LDDFGT  S ++ L  +P D +K + S +
Sbjct: 799 ELEITESLLVDENDALFAQLTALRDMGVTLALDDFGTGYSSMAALRKLPIDVMKIDRSFV 858

Query: 889 TGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   A+  +R+I+ +A+     ++A+ +  E   + L  +GC  +Q    + P+  
Sbjct: 859 IDLETDASALPAVRAIVALAQASHLHLVAEGVETETQARMLRELGCHELQGYLYSRPVEP 918

Query: 947 NSILKL 952
           +  L+L
Sbjct: 919 SKFLQL 924


>gi|296139819|ref|YP_003647062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tsukamurella paurometabola DSM 20162]
 gi|296027953|gb|ADG78723.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tsukamurella paurometabola DSM 20162]
          Length = 836

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 140/583 (24%), Positives = 258/583 (44%), Gaps = 23/583 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + V A+    + +     R   A+ G+GD +WDWD + DR+  +     +LG    
Sbjct: 257 IGISRDVTASRSDEERLRRSEARWQFAIDGAGDGIWDWDPLSDRIFYSRQWKQMLGYEDD 316

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
            +   +  W   +H +D +     +           + E R+     ++ W+  R R M 
Sbjct: 317 EIEDSVEAWAALVHPDDFERCWEAVHRVARGEATEYKLELRLLTKSGEWRWIYDRGRAME 376

Query: 503 SNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +G   R IG  +DITE+       ++    +   A  D+LT +  R +F++R T ++
Sbjct: 377 WDDDGRPTRIIGTHSDITERHTHEREIRELTHRLQWRADHDDLTELLGRTTFVERATRVV 436

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           +     D     V+ +D+D +K+IND LG  VGD VL    +R+       D++ RL G+
Sbjct: 437 EE-RRADGAELAVLWVDLDSFKRINDSLGHKVGDLVLRVAAQRLIAACAPDDLVGRLGGD 495

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F  +      +  +  +   +R ++A P+ +    +TVT SIG    T+      ++L 
Sbjct: 496 EFIALRPRVLPNDDVLAWTERVRLALARPMEVDGISLTVTCSIGLVESTAQ-DDIGQLLI 554

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           + +LA+ HAK  G N V     +   S +    +   +   +++ ++ + Y P++     
Sbjct: 555 DGDLALLHAKRSGRNRVVRHSSTLRASQQERVDLATHIRAKIDSGDIVVRYQPVVDFTTG 614

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E+VG EAL +   P    +S  EF+   E L ++ ++   +L R   D  S  +      
Sbjct: 615 EMVGAEALTRIAGPNGIELSPGEFLPHLETLGLMTSLAALVLHRACADFASAPELG---- 670

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            ++ +N+AS+DLL   L   +   +  T   P+R+ L  +E VV            RL +
Sbjct: 671 -WVSVNLASEDLLVPYLPATLGRTLDVTALDPARLILEINERVVPE--PHILAATRRLSE 727

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNI 909
           +G  + LDDFGT  S ++ L  +    VK + S++    T    +  A+L + I MA+ +
Sbjct: 728 LGPRIALDDFGTGWSSMAQLKDLDLALVKIDRSVVTASTTHDDPQLEAMLTAAIAMARAL 787

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              +IA+ I    + + L   G    Q    +  + F ++   
Sbjct: 788 NLDVIAEGIERVEEARALAAAGARVGQGFLWSPAIDFAALRTW 830



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 385 TVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
              +         +   +  +R        +  + D+V+  D           +A + G+
Sbjct: 129 AKREAAARLQERVEETKTSSQRTADLLQAVIDAAPDLVYIKDRAGRYQYINAAVAKLSGV 188

Query: 441 ASGSMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           A     G     L         +         +    GR   E+ V   D      +   
Sbjct: 189 APEDAVGKDDTVLF---PGPLAETLMATDRRIMETGVGREVEEYPVV--DGVKRTYLSNK 243

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               +++G+++  IGI+ D+T  +   E + 
Sbjct: 244 SAHRDADGNVIGLIGISRDVTASRSDEERLR 274



 Score = 44.9 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 18/159 (11%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  S D  +  D+    V   P      G +   +       +  +     +  R     
Sbjct: 19  IERSHDSFYIHDVEGRLVAVNPQTCVSTGYSREELLQMNALDIVQM---TAEAARIGWAE 75

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R   +    R    D     +   +      +      +G++ DI+E+  S     
Sbjct: 76  AFAGRTVLVPAMHR--RKDGSTFPVEALLSSHLIGDQR--YIVGLSRDISERVASDRAKR 131

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             A               +R+      S    +L   V+
Sbjct: 132 EAA-----------ARLQERVEETKTSSQRTADLLQAVI 159


>gi|16264177|ref|NP_436969.1| hypothetical protein SM_b20447 [Sinorhizobium meliloti 1021]
 gi|15140302|emb|CAC48829.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 564

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/430 (28%), Positives = 203/430 (47%), Gaps = 13/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+PNR+ F D+L   L      +  R  +M ID+D +K IND LG   GD
Sbjct: 132 LHQATHDVLTGLPNRRQFSDQLRGAL---PVPNGARLALMQIDLDDFKPINDTLGHGAGD 188

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     RI  +L+  +   RL+G+ F +I    +   +    A A+  +   P  +  
Sbjct: 189 AVLKMAADRIRSVLRDREFAYRLAGDEFAVIQWRADQPREAERLADALINAFKEPFTVEG 248

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             + V AS+G A   +      +++K A++A+Y AK  G     +F  S          +
Sbjct: 249 INVFVGASVGIAVAPADGNEVEQLMKAADIALYAAKKDGRGRSSTFTRSMLIVLEQREML 308

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++  + +L Y P+++     +VG EAL++W HP  G I  + F+ +AE   ++
Sbjct: 309 RRSLRTALQEGQFFLEYQPLVKPSS-SVVGFEALLRWRHPLVGIIPPNVFIPMAEADGLM 367

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LER  R  + W          I +N++  + L   L + +   +        R
Sbjct: 368 SDIGRWLLERACRAAMDWPSH-----FTIAVNLSPAEFLHEGLTDRVAQTLDLVGMRADR 422

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV++     +   L  L  +G+ ++LDDFGT  S LSYL   PFDT+K +   
Sbjct: 423 LELEITESVLLERTINNLDTLNTLNVLGVQISLDDFGTFYSSLSYLKNFPFDTIKIDQYF 482

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      EK   I+RSII +A  +   + A+ +        L + GCD +Q   +  P+ 
Sbjct: 483 IRDLERDEKSQTIVRSIIALAHGLGMNVTAEGVETAEQAIWLQKEGCDRLQGYFLGVPMR 542

Query: 946 FNSILKLLKE 955
             +I   L++
Sbjct: 543 AEAIADFLRK 552


>gi|86357892|ref|YP_469784.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281994|gb|ABC91057.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 764

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 256/590 (43%), Gaps = 34/590 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     + +     R  LA+  S   V++ DI  D V     +  I GL   S       
Sbjct: 156 ARKEAEETLSLLSRRLDLALEISHIGVFEADIENDTVEWDDRLIAIYGLQGASHQIASDA 215

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H +DR+    +    V       Q E+R+   D     +  R     + NG   +
Sbjct: 216 WAKSLHPDDRERVLGLAGRSVESGSD-FQQEYRIIRGDGVERIIRARSAFFVDGNGH-RK 273

Query: 512 YIGIANDITE---------------------QKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            IG   D+TE                      + + E I   A  D LT +PNR+     
Sbjct: 274 LIGANWDVTEDVALRNELQRAKDLAEARNRELEAAKENIERLALHDYLTDLPNRRYLDKM 333

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L            L   ++ +D+D++K+IND LG   GD +L      +   ++  D +A
Sbjct: 334 LDERSAEC-RAKGLALAILHVDLDRFKQINDTLGHRAGDAMLQHAANVLRNSVRAADFVA 392

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I+      S KI   A  + + +  P+     +    ASIG A    +K+ +
Sbjct: 393 RIGGDEFVILCAMNAASKKIGGLAQRIIRELRKPVRYEGHDCRFGASIGIAVNGGAKLDA 452

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPII 728
            + L +A++A+Y AK  G N  E F  S+         + +++ + +E +E    Y    
Sbjct: 453 KQTLLDADIALYRAKGLGRNRFEFFSASARNDIVSAKQLADEILIGLERNEFVPFYQLQF 512

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++ G E L +W HP  G ++   F+ IAE+L ++  I+  +LER   D  +W   
Sbjct: 513 DARTLDVTGAETLARWQHPVHGLLTPDRFLDIAEDLDVVSTIDALILERALADRRAWIKD 572

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLL 847
               P  I +N++++ L D +L + ++AL       P  I     ES+ + + E+     
Sbjct: 573 GLSIP-KISVNVSARRLTDPDLGKKLRAL----KIEPGAIAFELLESISLDDCEKSVAAN 627

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +LRK+GI + +DDFGT  + +  L  +  +T+K +  L+     + ++  ++ SII +
Sbjct: 628 LKKLRKVGIDIHIDDFGTGHASIVSLLRLSPNTLKIDRELIRMLPQSAEQRKLVGSIIDI 687

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +++   +IA+ +     ++ L ++GCD +Q   +A P+    I   ++ 
Sbjct: 688 GRSLNILVIAEGVETADHVRILEQLGCDTLQGYALARPMPAMQIPSFIRA 737



 Score =  115 bits (287), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHI 458
           +     R + A++GSG  VWD +   DR   +P   TI G+A    + G    WL  +H 
Sbjct: 33  LAERESRWNHALVGSGLGVWDHNYRLDRKYYSPTWKTIRGMAPDEEVAGDYDAWLQLVHP 92

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIAN 517
           +DRD     ++           +++R R  D  + W+  R   +  + NG   R +G   
Sbjct: 93  DDRDFVAHAIERQNAGDPNYQIFQYRERHRDGHWVWIDCRGACVEWDENGVPTRIVGTDI 152

Query: 518 DITEQKKSLE 527
           DIT +K++ E
Sbjct: 153 DITARKEAEE 162


>gi|204931134|ref|ZP_03221928.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204319901|gb|EDZ05107.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 699

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   ++    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ESTSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEASDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|87119011|ref|ZP_01074909.1| sensory box/GGDEF domain/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86165402|gb|EAQ66669.1| sensory box/GGDEF domain/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 816

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 137/587 (23%), Positives = 257/587 (43%), Gaps = 15/587 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            +  I  T    +         +  + ++    +  + +IV   D     +         
Sbjct: 215 EISDIVDTTNSLLNQLEINQSVLRENRDQLKALIDVNPNIVMALDRNLTVLFANNSANLF 274

Query: 438 LGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            G+ +  + G     L   ++  + D F   L   +       + E  +     +   + 
Sbjct: 275 YGVKAEQILGANFLELHRSVNSQEADRFAHELIQVIHNLEESYEVERELTDGMARKRVLQ 334

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           I    +       L  +   +D+TE+    + ++  A+QD LTG+PNR+ FLDRL   + 
Sbjct: 335 ISYTAIVYEGHASLLLVA--SDMTEKITREKQLIQVAYQDQLTGLPNRELFLDRLGMAIT 392

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +A+       ++ ID+D+++ IND  G +VGD ++++L+ R+   +   + LAR+ G+ 
Sbjct: 393 YTASHKQY-GALLYIDLDEFRLINDSKGHSVGDSIILALSDRLASKVNSSNTLARIGGDE 451

Query: 617 FGIILISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           F IIL   +   + A       A  +   I  P+ +   E  VTASIG   ++     + 
Sbjct: 452 FCIILSGVDEDKEAAINKIVSTAELILSDIRQPLTIKGNEFRVTASIGVVIFSEEDSDAE 511

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           E+ K  + AMY+AK  G N +  F++      +  V ++ DL  A+EN+E      PI+ 
Sbjct: 512 ELFKFGDTAMYNAKSAGRNRISMFKMEMTQEVASYVRLENDLKSAIENNEFEFYLQPIVC 571

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQ 788
           +   ++ G EALI+W+HP+ G I  +EF+   E   +I  I+  +L  +   I       
Sbjct: 572 VGSNQVKGAEALIRWNHPEKGIIGPNEFIDFLESSGLICNISDGLLRDLCAFINEKDLLS 631

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  I +N+++ +L      E  +A +          +L  +ES  + + E S   +
Sbjct: 632 VLPEGFRISLNVSAIELHSKNFIETFKATLRDYAMPADLFELEITESSAIQDIEESVAKM 691

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
            +L  IG+  +LDDFGT  S LSYL  +P + +K + S +          A++ +II + 
Sbjct: 692 KKLALIGVHFSLDDFGTGYSSLSYLKRLPVNKIKIDRSFIQDLIIDHNDQALVTAIISIG 751

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K+++  I+A+ +  +  +  L +      Q    + P+      +LL
Sbjct: 752 KHLKLDIVAEGVEWQAQLDWLKQHS-MMYQGYLFSKPIKQQDFYQLL 797


>gi|91782494|ref|YP_557700.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91686448|gb|ABE29648.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 786

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L   +   A     R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEYDLLTGLRNRYATLQSLRHDVAQPANLG--RLAILFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  E+   +    A A  ++ A P 
Sbjct: 386 NAGDIVLQMTASRLAIAVGDGGALSRIGGDEFVVVIKGEDVEKRAVTLAEAAAEAFAKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A ++ +  +  ++LK A+LAMY AK  G N  + +          
Sbjct: 446 EVRGSSFVLHASIGIALYSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPQLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALAEGQLFLAYQPKIDLTRRCITGFEALVRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 566 TGLIVPIGDFVIETACRQLALWQQQGYDT-LSLAVNISAVQFWRGDLYETISHAIEESGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 SARRLELEITETAMMEYPELVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFIQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  LL+ 
Sbjct: 745 RPVPVDAIPALLER 758


>gi|297568725|ref|YP_003690069.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924640|gb|ADH85450.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 482

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/443 (26%), Positives = 220/443 (49%), Gaps = 16/443 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               I    F D LTG+ NR  F DRL     +SA        ++++D+D++K IND+ G
Sbjct: 31  LEAEIHRLTFYDRLTGLANRHLFYDRLEQAGAVSARS-GCYCAMLLLDLDRFKGINDLWG 89

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA-----DFAIAMRK 639
             VGD +L  +  R+  +++  D +AR  G+ F ++ ++ +++ ++A       A  +R+
Sbjct: 90  SRVGDQLLQIVAARLRTVVRACDTIARRGGDEFAVLFLNLSDNAELAVTRAGRLAEKIRR 149

Query: 640 SIAMPI----NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +I  PI      ++R+  ++A  G   +   + ++ ++L+ A+ AM HAK  G  ++  F
Sbjct: 150 TITAPICGSEYEMDRDFHLSAGFGVVLFRGQEESAVDLLRYADTAMCHAKEAGPGNIRFF 209

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +      +   + +DL  A+   EL L Y P     +  IVG EAL++W HP+ G I+
Sbjct: 210 DPAIQIALEESEAMLQDLRQALHQDELVLHYQPQTDG-NGHIVGAEALVRWHHPRQGLIA 268

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE   +I +I   +L++       WR         + +N++++        + 
Sbjct: 269 PGHFIPLAETNGLILSIGRRVLQQACAAATRWRR-YIGADWQLAVNVSARQFQQQTFVDE 327

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +++ +   P R+KL  +ES+V+ + + +   +  LR+ GI   +DDFGT  S L+ L
Sbjct: 328 VRTIVADSSLEPHRLKLELTESLVLSDIDDTIAKMCALREDGIGFAMDDFGTGHSSLAKL 387

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            ++P D +K + S +     T +  AI R+II M + +   ++A+ +  E     L R G
Sbjct: 388 KHLPLDQLKIDRSFIGDLETTPQDTAITRAIIAMGQALGLEVVAEGVETEGQSDFLRRHG 447

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C   Q    + PL      +LL+
Sbjct: 448 CHGFQGYFFSKPLPEADFEQLLQ 470


>gi|200387735|ref|ZP_03214347.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199604833|gb|EDZ03378.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 699

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +N    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ENTSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMY+ KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYYTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|89054522|ref|YP_509973.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88864071|gb|ABD54948.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 569

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 207/424 (48%), Gaps = 15/424 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR+            +   ++     + +D+D +K++ND LG A+GD +L  +
Sbjct: 138 DELTGLGNRKYL-----KACFEAIAQEDSGAIALFLDLDHFKQVNDTLGHAIGDKLLCKV 192

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ + ++  DI+ R+ G+ F I+LI+  +     D A  + K I  P  +   ++T+ 
Sbjct: 193 ADRLRKSVREGDIVVRIGGDEFAILLIN-WDQSAAEDVAARIIKVIGRPFLIEGHQVTIG 251

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713
            SIG A    ++  S ++L+ A++A+Y +K  G N    F+ +       R   + DL  
Sbjct: 252 VSIGMAVRLPNERESEKLLQRADVALYESKRLGRNRFHWFKDAMLIELQQRRDTEIDLRK 311

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           AV   +  +V+ P +   D++I G EAL++W+HP  G I+  EF+ IAEE  +I  I  +
Sbjct: 312 AVLLGQFGVVFQPQMNFQDQDITGFEALVRWNHPLRGVIAPIEFIEIAEETGLIVEIGTW 371

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L    +    W +      I + +NI+     D      +Q  + K+   P R++L  +
Sbjct: 372 VLAEACQAAAGWPE-----DIAVAVNISPVQFEDEGFMVSVQTALQKSKLQPHRLELEIT 426

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
           E+ ++ N E     +  L+ +GI ++LDDFG   S L+YL   PFD VK + S +    +
Sbjct: 427 EATLLSNEEAVLARMNELQGLGIKISLDDFGIGYSSLNYLRKYPFDKVKIDQSFVREPFA 486

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E    I+ ++  +   +  T++A+ +     ++ +   GC  IQ   V  P+  + I  
Sbjct: 487 DESSHQIVEAVAHLGSALGMTVLAEGVETHEQMERIRSKGCASIQGYLVGRPIPLDDITS 546

Query: 952 LLKE 955
            L  
Sbjct: 547 FLTS 550


>gi|322614529|gb|EFY11459.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618249|gb|EFY15140.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625962|gb|EFY22776.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626732|gb|EFY23529.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631300|gb|EFY28060.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635433|gb|EFY32147.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643433|gb|EFY39997.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647263|gb|EFY43761.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649727|gb|EFY46154.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655599|gb|EFY51905.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658371|gb|EFY54636.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664987|gb|EFY61177.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667375|gb|EFY63537.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674623|gb|EFY70715.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675746|gb|EFY71819.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682382|gb|EFY78405.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684753|gb|EFY80754.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323196169|gb|EFZ81329.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196735|gb|EFZ81880.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204372|gb|EFZ89381.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207720|gb|EFZ92667.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209990|gb|EFZ94895.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214295|gb|EFZ99048.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219028|gb|EGA03534.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323230402|gb|EGA14521.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233378|gb|EGA17472.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239415|gb|EGA23465.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242334|gb|EGA26360.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247312|gb|EGA31277.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250402|gb|EGA34286.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256850|gb|EGA40565.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263866|gb|EGA47385.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264113|gb|EGA47621.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271628|gb|EGA55047.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 699

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 223/444 (50%), Gaps = 7/444 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   ++    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ESTSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEASDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           +  P     I + +++   +   +
Sbjct: 669 LGKPRTAEEIARDIRDPANIFTRS 692


>gi|146279592|ref|YP_001169750.1| hypothetical protein Rsph17025_3576 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557833|gb|ABP72445.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 796

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 137/628 (21%), Positives = 264/628 (42%), Gaps = 37/628 (5%)

Query: 351 FIGLWMAITKRLDNDIIQ---PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +   + +  R  + +       + G       ++   V   +         +  +    
Sbjct: 167 VLANEIRLRHRQGHWVWIMSRGRVTGFSADGAPVLMSGVHMDISRRKALEDELQVERNLL 226

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNF 464
              +  S   V  +D     +    +   +LG  +  + G   +   W     I+D D  
Sbjct: 227 RRVMETSVSAVLAFDGTNRVIFANREAEAVLGAPAEQLVGRTVDDPGWG----ISDGDGS 282

Query: 465 RTILDSFVGYRRGRLQYEFR-----VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
              L  +   R        R     V+        + + + P+   +  + R +    D+
Sbjct: 283 ELPLGRYPVVRAATENKVLRGLRLDVQHPQKGARVLSVNVAPVEQGDSRV-RVVAAFTDV 341

Query: 520 TEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           TEQ ++        E  L  A  D +T +PNR  F + L   +         R  ++ ID
Sbjct: 342 TEQIEAERTLAAAAEDALYQALHDPMTRLPNRVLFRECLEAAV-----RHGGRLALIFID 396

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K+IND  G  VGD V++ + R++G  +     +AR+ G+ F +++    +   I D
Sbjct: 397 LDNFKQINDRFGHFVGDRVILDVGRKLGAAVPPDSTVARIGGDEFTVLVPLAAD-DSIED 455

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
              ++ + I  P+ +      +TAS G + +      +  M++NA+LAMY AK +G N  
Sbjct: 456 RVASLVREIEQPVTVEGNIFYLTASFGVSLFPDDATDADTMVRNADLAMYAAKAKGRNQC 515

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKW 749
             F  +       +  + + L  A+    L L   P + L +   IVG EAL++W+ P+ 
Sbjct: 516 VRFDAALREQSSQLGILGQGLQRAIRQRHLELYLQPKVALSEGRPIVGAEALLRWNDPEL 575

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS + F+ +AE   +I++++  + + +   +  WRD+    P+F  +NI+++ L    
Sbjct: 576 GSISPARFIPVAESCGLIRSLDQHVTDLLCELLERWRDKGLHLPVF--VNISAETLASEG 633

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             +G    + +    P+R+ +  +E  ++G    +R  +GRL   GI L++DDFGT  S 
Sbjct: 634 FADGFLGKLERLAIPPARVGIEITEGSLLGTSHVTRSNVGRLTSAGIPLSVDDFGTGYSS 693

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
           L YL  +    +K + S +      R    AI+R+++ + + +    +A+ +        
Sbjct: 694 LGYLHRLALSELKIDRSFVAQIGTGRDGAEAIVRAVLALGRALGLRTVAEGVETGFQCDW 753

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L R GCD  Q      P+      +L+ 
Sbjct: 754 LIREGCDQAQGFLFGPPVPVAEFERLVA 781



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 3/200 (1%)

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-LA 392
           +  AV  + + + I      + +       +  +Q     G +    L+ + V++     
Sbjct: 21  FVAAVYAVLSALWILFSDRTVALLAENPAAHHAVQTYKGLGFITASSLVLYLVLRSAWSE 80

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRN 451
               +  +     R +  + G     W +D+    +      A ++G +   +    I  
Sbjct: 81  LSASNARLTEAERRLADVIRGGEVGTWQFDLGTGIILINDRWAELIGYSRSDIEPVTIEF 140

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510
           W   +H  D    R             L  E R+R     + W++ R R    +++G  +
Sbjct: 141 WNRIVHPEDLARMRERHLRQFAEGNHVLANEIRLRHRQGHWVWIMSRGRVTGFSADGAPV 200

Query: 511 RYIGIANDITEQKKSLEGIL 530
              G+  DI+ +K   + + 
Sbjct: 201 LMSGVHMDISRRKALEDELQ 220


>gi|146337728|ref|YP_001202776.1| GGDEF domain-containing protein [Bradyrhizobium sp. ORS278]
 gi|146190534|emb|CAL74536.1| Putative diguanylate cyclase signaling protein (with GGDEF, EAL and
           MHYT domains) [Bradyrhizobium sp. ORS278]
          Length = 690

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 223/446 (50%), Gaps = 12/446 (2%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D+   ++++EG    A QD LTG+ NR     RL  +L     D+     V+ ID+
Sbjct: 236 AYMIDMQATQEAVEGYRQLALQDPLTGLANRNGLAQRLAPLLTEG--DETAHLVVLAIDL 293

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND  G A GD VL ++ +RI   L+  + LAR+ G+ F  +        + A F
Sbjct: 294 DRFKDINDAHGHAAGDAVLTAIAQRIASTLQPGEFLARIGGDEFVAVKSEIFARAEAARF 353

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNH 691
           A  MR  +  P+   ER ++V  SIG A      +T+ E+L  A+LAMY AK   +G   
Sbjct: 354 AERMRALVLAPVEWEERSLSVGCSIGVALHPEHGLTADELLTRADLAMYRAKSLGQGKIC 413

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +      R  +  DL  A+  +E  L Y         EI+G EAL++W+HP  G 
Sbjct: 414 TYEPSMDEASRRRAELAIDLKRALVRNEFELHYQVQNDTRSGEIIGFEALLRWNHPVKGR 473

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +  ++F+ +AE+  +I  I  ++L        SW       P  + +N+A   L +++L 
Sbjct: 474 VPPNDFIPMAEQTGLIVDIGDWVLRTACATAASWSQ-----PFKVAVNVAPMQL-NHDLP 527

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++ +T  +P R+++  +E+ ++ + + +  ++  L+ IG+++ +DDFGT  S LS
Sbjct: 528 RRVAEVLRETGLAPDRLEIELTETGIIADRQHALQVMQALKGIGVTVAMDDFGTGYSSLS 587

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   PFD +K + S +    ++    AI+++ + + +++   ++A+ +  E  +  L  
Sbjct: 588 TLQVFPFDKIKVDKSFIQSVETSVHAAAIVKATLLLGRSLNIPVLAEGVETEQHLAFLRE 647

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC  +Q      P+   +I +++++
Sbjct: 648 EGCTSVQGFLFGKPMPNEAISRMIRD 673


>gi|326794510|ref|YP_004312330.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326545274|gb|ADZ90494.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 701

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 141/553 (25%), Positives = 248/553 (44%), Gaps = 21/553 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +  +   V   D     V   P +  +  +  G +  P    L              
Sbjct: 163 KEVIESAEFGVAIIDHDLQLVEQNPALFRLFEMLPGDVGRPAALLLELC-----QRQFPE 217

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               +  R  R   E       +   WM + + P+ +   +   ++ +  DI+ +K   +
Sbjct: 218 FQRILETRS-RWSGELYWMKPPSLSRWMQLTVSPVESET-EGHYWLLLVTDISREKYLQQ 275

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                 + D LT +PNRQ +   L   +++           M +DI + K +N+V G  V
Sbjct: 276 SNEKLTYFDVLTNLPNRQYYWQCLENAIEV-----GQSFFAMQLDIKQLKSVNEVFGFTV 330

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  L  R+ +L+   D+LAR+ GN F +IL  E    K    A  M   I  P  +
Sbjct: 331 GDILLKELAERLRQLVSPNDVLARIGGNEFAVILR-ETQQEKCEQIARKMISDICAPYYV 389

Query: 648 LEREI--TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703
           +E++   +V   IG + +    + + E++K A+LA +  K  G + V+ +      S   
Sbjct: 390 MEQQYKCSVGVRIGVSHFPYDSVVAEELMKYADLASFSIKQGGKSAVQFYSRELKESSLR 449

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++  L  A++N E  L   PI+ L   +I   EALI+W  P  G I   EF+ IAE+
Sbjct: 450 RMELEAALRDAIDNGEFELFLQPILDLDTGKISQAEALIRWRRPGIGLIFPDEFIPIAEK 509

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I AI  ++++  +R +     Q     I + +N++   + D  L   +Q  I     
Sbjct: 510 SGLIIAIGKWVIQEASRLLAVLHQQ--DQFIKLSLNLSPSQVSDRSLLGFIQRHIEANHV 567

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P+ ++L  +E+V++ + ER    L  +RK+G+S+ +DDFGT  S LSYL  +P D +K 
Sbjct: 568 DPTYLELELTENVLVNDFERINHFLSEVRKMGVSVAIDDFGTGYSSLSYLPKLPIDFIKI 627

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +     ++   AI+ +I+ MA +++  +IA+ +  E     L    C   Q    +
Sbjct: 628 DRSFIGELIDSDSNRAIVLAILAMANSLKLGVIAEGVEVESQKAFLREHHCQSAQGYLFS 687

Query: 942 SPLGFNSILKLLK 954
            P+ F+   KLL+
Sbjct: 688 RPVPFDEFCKLLR 700


>gi|113968889|ref|YP_732682.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113883573|gb|ABI37625.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-4]
          Length = 572

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 213/437 (48%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +   ++    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLMNRYGFELCLNRAIARAKRSNDF-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+  +L+  D++ARL G+ F +++   +        A  + K+
Sbjct: 187 DTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANRLLKA 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEEVFGLGDNDVMIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A + +EL + Y   +     +I+G+EALI+W HP+ G IS  +F+
Sbjct: 307 REVRYRNHIESSLRMAQKQNELKVYYQAQVDSKTHQIIGMEALIRWLHPQDGLISPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ +++ I  ++L    R    W  Q         + +N+++  +   +L E +  
Sbjct: 367 PIAEEIGLMEEIGDWILLEACRQAQQWLKQLAPTGHSFTMAVNLSASQIGHIDLYEKIVK 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T  SP  ++L  +E+ ++  P     +L ++ ++G+   LDDFGT  S L ++   
Sbjct: 427 MLAETGLSPKALELEITENCLIEEPHEHAKVLDKIAQLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A     T +A+ I      +  T   CD 
Sbjct: 487 PISVLKIDKSFIASYDKDEKDARLLTALLNFAYGFNVTSVAEGIETVEQAEFCTERHCDV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + P+  +    
Sbjct: 547 LQGYLFSRPIEASEFEA 563


>gi|323212725|gb|EFZ97540.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
          Length = 524

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/483 (23%), Positives = 224/483 (46%), Gaps = 11/483 (2%)

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            + E  ++    Q  ++       + S  + +  I    DITE++++ E +   A  D +
Sbjct: 44  YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGTDITEERRAQERLRILANTDTV 103

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR +  + +   +  +         ++ +D+D +KKIND  G   GD +L +++  
Sbjct: 104 TGLPNRNAIHEFINHAIASAGESQ---VGIVYLDLDNFKKINDAYGHMFGDQLLQAVSLA 160

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L+   +LARL G+ F I+L +  +   +   A  +   +  P  +   E+    +I
Sbjct: 161 LLSCLEEDQLLARLGGDEF-IVLAAHTSQAALEAVASRILTRLRQPFRIGLIEVYTGCAI 219

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE 716
           G +        S  +++ A+ AMY+AK  G      F   ++    D   +  +L  A+E
Sbjct: 220 GISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVFSPEMNQRVFDYHWLDTNLRKALE 279

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N +L + Y P I     E+  LEAL++W  P+ G I   EF+  AEE  +I  +  +++ 
Sbjct: 280 NDQLLIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVIL 338

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            + R I  WRD+     + + +N +++ L D  L   ++  +    +    I +  +ES 
Sbjct: 339 DVVRQIAKWRDKGIN--LRVAVNFSARQLADQTLFTALKQALYDLNFEYCPIDVELTESC 396

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ N   +  ++ +  ++G  + LDDFGT  S LS L   P D VK + + +    ++  
Sbjct: 397 LIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQPL 456

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P+   S  +  K
Sbjct: 457 SQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYK 516

Query: 955 ERF 957
              
Sbjct: 517 RYQ 519


>gi|119945968|ref|YP_943648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119864572|gb|ABM04049.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 799

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/578 (20%), Positives = 237/578 (41%), Gaps = 15/578 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I  +         + ++ ER  + +   GD V   +  +      P    + G A     
Sbjct: 212 INDITERKALELTLSNEFERTRVTLSSIGDAVITTNEQQVVEYINPIAEHLTGWALADAI 271

Query: 447 GPIRN-WLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G         I+ + R   +T +   +  R       +  + + D   +W+     P+  
Sbjct: 272 GQPVTRVFNIINQHTRLVAKTAIARCLDERAIVGPVCDTVLLSKDGNEYWVEKSAAPIFA 331

Query: 505 SNGDILRYIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               I+  + +  D+T QK+  E +    A  D+LTG+ NR+ F DR+   +  S+    
Sbjct: 332 PGDVIIGVVMVFRDVTGQKRLREEVAYHRASHDHLTGLANRREF-DRMLLEMFESSISPG 390

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   +  ID+D++K IND  G   GD +L  ++  + + ++  D++AR+ G+ F I+  S
Sbjct: 391 VAHVLCCIDLDQFKLINDSCGHFAGDTLLKEISVVLTQTVRAKDLVARIGGDEFAILFQS 450

Query: 624 ENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            ++       A  +   IA    +  ++   V ASIG          +    +  E+A +
Sbjct: 451 -SDLQAAKQIAQDVCDKIAQIRFHHKDKFYHVGASIGVVPLDGRWDNAEAAQQAGEIACF 509

Query: 683 HAKHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIV 736
            AKH G   V  +         + D++     L  A++ +   L   PI+      E+ +
Sbjct: 510 AAKHEGRGRVHMYTDLDKTVMEQRDQMQWASRLQQAIDENRFELFAQPIMALDEQAEQGL 569

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E L++        +S + FM  AE+  +   I+ +++  + + + +  D+     I I
Sbjct: 570 HFEVLLRLRETGGALVSPAVFMASAEQFGLATQIDHWVVNNVLKWMKTHADELEKVHI-I 628

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   + D +  + +   +        +I    +E+  + N + +   +  + + G 
Sbjct: 629 AVNLSGNSVGDRDFHQFLIEALDHAQVPVQKISFEITETAAIENLDIATEFIAMVHQRGA 688

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
            ++LDDFG+  S ++YL  +P D +K +G  +          A++RSI  +A       I
Sbjct: 689 KISLDDFGSGMSSMAYLKKLPVDYLKIDGQFVKDMENDTVDCAMVRSIKQIADLTGKITI 748

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           A+ +     +  L  +G D+ Q  H+  P   N I   
Sbjct: 749 AEFVENAKILMLLKDIGVDFAQGYHIGKPQPINEIFAW 786



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D        +  I  +  L+   +          IH++D +     +             
Sbjct: 120 DGSSRFPYASEGIRNVYELSPLQLKKDADLAFKRIHLDDVEAIHQQIADSAKNLTV-WHQ 178

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++RV        W+     P + +NG  L + G  NDITE+K   
Sbjct: 179 QYRVVLPKAGIRWLEGNATPEARANGSTL-WHGYINDITERKALE 222


>gi|288958083|ref|YP_003448424.1| sensory box/GGDEF/EAL domain protein [Azospirillum sp. B510]
 gi|288910391|dbj|BAI71880.1| sensory box/GGDEF/EAL domain protein [Azospirillum sp. B510]
          Length = 819

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/566 (21%), Positives = 236/566 (41%), Gaps = 24/566 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI---NDRDNF 464
           +  +  + D +   D      +       + G   G + G     L  +      D   +
Sbjct: 255 ATLLDAAVDGIIVSDRTGVIRSINSACCRLFGYDDGELVGRNMTVL--MPPPFSRDHGRY 312

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                     +   +  E   +  D     + + +       G+ + ++GI  DI+E+  
Sbjct: 313 VDGYMRTDRAKIIGIGRETLGQRKDGTVFPIHLSVGEARL--GNDVTFVGIIRDISERLA 370

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL----------RPTVMVIDID 574
           +       A  D LTG+  R +FL+   T+L     D             +  +  +D+D
Sbjct: 371 AERRASYLARHDPLTGVLTRTAFLEECETLLATCRPDGGEAGAASGGGADQFALFSLDVD 430

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++  +N+  G  VGD  L ++  R+ E+L    I+ R++ + F   L    ++      A
Sbjct: 431 QFSDVNEAFGFHVGDAALKAMVSRVTEVLPPNTIICRIAADEFAA-LSRVTDADHARRLA 489

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +   I      + +  S+G A    S  T  ++   A+LA+   +H GGN V  
Sbjct: 490 GVLHDRLTASIYADRHWVRLRLSVGAAVRDESAGTLEDLNAKAKLALQAVQHNGGNAVCF 549

Query: 695 FRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        + R+M+   L  A+E +EL LVY PI+   +  +   EAL++WDHP  G +
Sbjct: 550 YTPEMAAAATRRMMLTMHLTHAIERNELRLVYQPIVD-RNGRVRSAEALLRWDHPALGPV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ +AEE  +I  +  ++L      +  W     +P   + +NI+ +  L   L  
Sbjct: 609 SPGEFIPVAEESGLIVPLTDWVLSTAIAQMARWEAAGVLPD-RVFLNISGQQFLRGNLML 667

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L+ +       + L  +E   + + + +   LG L  +GI   +DDFG+  S LSY
Sbjct: 668 RLDELLGEHPSLRRHLGLEITEQAAVRDLKVAVRTLGELADLGIQAAIDDFGSGYSSLSY 727

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +P   +K + + +       K  A++R+ + MA  +  T +A+ +  E     L  +
Sbjct: 728 VQQLPVAKLKIDRAFVIDVPENPKSNALVRAAVGMAHGLGLTTVAEGVETEEQRDFLVSV 787

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GCD +Q      P+  +++  L++ +
Sbjct: 788 GCDMMQGFLFGRPMTPDALADLVRGQ 813


>gi|261251711|ref|ZP_05944285.1| hypothetical protein VIA_001732 [Vibrio orientalis CIP 102891]
 gi|260938584|gb|EEX94572.1| hypothetical protein VIA_001732 [Vibrio orientalis CIP 102891]
          Length = 826

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 227/440 (51%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  +     A  D LT + NR     +L   +  S ++ N    ++ +D+D++K IN
Sbjct: 378 ELQEEKKNFDFLAHHDPLTLLANRLLATKKLDEQIAFSQSN-NSPFLLLYLDVDEFKTIN 436

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD++LVS++  + +L+     +AR+ G+ F I+L   ++       A  + K+
Sbjct: 437 DSLGHASGDNLLVSISEILTKLIGDTGFVARMGGDEFMIVLSDMDSEEG-ERVADQINKA 495

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           + MP  + +R I V+ASIG   +         +++NA+ AMYHAK  G +    +  +++
Sbjct: 496 LRMPYYIEDRMIFVSASIGICQFPIHGEDGETLVRNADTAMYHAKRNGRDQFRIYADQMT 555

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +D + I   L  A++N EL + + P + L  + IVG EAL++W HPK G +   +F+
Sbjct: 556 HEVTDLIEINMGLHNAIKNDELVVHFQPKVCLDSQRIVGAEALVRWQHPKLGLLPPFDFL 615

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817
            +AE+  +I  I+ ++  ++A  I  W+        + I +N +++     +L E +Q +
Sbjct: 616 EVAEKTDLIIEIDKWVFRKVATLITEWKRAGTNIDNLIISVNFSARMFYKTDLAEQLQEI 675

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P ++ L  +E  +M + E     + +L   G  + +DDFGT  S LS L  + 
Sbjct: 676 LDQTECEPEQLLLEITERDMMRDFETCSRTIEKLHAKGYRIAIDDFGTGYSSLSMLKNLS 735

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +    +++    I  +I+ +A+ +E ++IA+ +  E  ++ L ++GC   
Sbjct: 736 ADCIKLDRTFIREVNTSKLDYEITSAILKLAEVLELSVIAEGVETESHVETLRQIGCSCA 795

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + A PL     L+ + +
Sbjct: 796 QGYYFARPLPVAEWLEFISK 815


>gi|16331738|ref|NP_442466.1| hypothetical protein sll0821 [Synechocystis sp. PCC 6803]
 gi|12230444|sp|Q55434|PHY2_SYNY3 RecName: Full=Phytochrome-like protein cph2; AltName:
           Full=Bacteriophytochrome cph2
 gi|1673324|dbj|BAA10536.1| sll0821 [Synechocystis sp. PCC 6803]
          Length = 1276

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 220/443 (49%), Gaps = 11/443 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+Q  +       A  D LT +PN   F  +LT  L  +   +     V+VI +D++K+
Sbjct: 418 ITQQFVTRLITQQTA-YDPLTQLPNWIIFNRQLTLALLDA-LYEGKMVGVLVIAMDRFKR 475

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFA 634
           IN+  G   GD +L  +  R+ + L        +L+R  G+ F I+L   +++ ++    
Sbjct: 476 INESFGHKTGDGLLQEVADRLNQKLSPLAAYSPLLSRWHGDGFTILLTQISDNQEMIPLC 535

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  +   P  L  + I +TAS+G ++      T+  +LK AE+A+  AK +G N  + 
Sbjct: 536 ERLLSTFQEPFFLQGQPIYLTASMGISTAPYDGETAESLLKFAEIALTRAKCQGKNTYQF 595

Query: 695 FRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +R         R+ ++ DL  A+ N E  L + P + L   +++G+EAL++W HP+ G +
Sbjct: 596 YRPQDSAPMLDRLTLESDLRQALTNQEFVLYFQPQVALDTGKLLGVEALVRWQHPRLGQV 655

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+ +AEEL +I  +  ++LE        +  +     + + +NI+++   D +   
Sbjct: 656 APDVFIPLAEELGLINHLGQWVLETACATHQHFFRETGRR-LRMAVNISARQFQDEKWLN 714

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   + +T   P  ++L  +ES++M + + + +LL RLR+ G+ + +DDFGT  S LS 
Sbjct: 715 SVLECLKRTGMPPEDLELEITESLMMEDIKGTVVLLHRLREEGVQVAIDDFGTGYSSLSI 774

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S +          AI++ +I +A  +    +A+ I  E  ++ L +M
Sbjct: 775 LKQLPIHRLKIDKSFVNDLLNEGADTAIIQYVIDLANGLNLETVAEGIESEAQLQRLQKM 834

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
           GC   Q   +  PL   +++  L
Sbjct: 835 GCHLGQGYFLTRPLPAEAMMTYL 857



 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 8/180 (4%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            + + +   +   +  D LT + NR  F   L                +++ D+D +K  N
Sbjct: 1088 QLETANIRLQQISSLDALTQVGNRYLFDSTLEREWQRLQR-IREPLALLLCDVDFFKGFN 1146

Query: 581  DVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMR- 638
            D  G   GD  L  +   + ++  +  D++AR  G  F IIL SE +     +   A++ 
Sbjct: 1147 DNYGHPAGDRCLKKIADAMAKVAKRPTDLVARYGGEEFAIIL-SETSLEGAINVTEALQV 1205

Query: 639  --KSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
               ++A+P  +      VT SIG A +     I  + ++K A+LA+Y AK +G N   ++
Sbjct: 1206 EVANLAIPHTVSGTG-HVTLSIGIAVYTPERHINPNALVKAADLALYEAKAKGRNQWLAY 1264


>gi|254506538|ref|ZP_05118679.1| signal transduction protein [Vibrio parahaemolyticus 16]
 gi|219550411|gb|EED27395.1| signal transduction protein [Vibrio parahaemolyticus 16]
          Length = 829

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/459 (25%), Positives = 226/459 (49%), Gaps = 10/459 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            R     +D+ E+KK+ +     A  D LT + NR     +L   ++ S      +  ++
Sbjct: 370 SRLAEAYSDLNEEKKNFD---FLAHHDPLTHLANRLLATKKLAEQIEDSEQSGQ-KFLLL 425

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +DID++K +ND LG A GD++LV +   + E ++    +AR+ G+ F I++ +  +  +
Sbjct: 426 YLDIDEFKTVNDSLGHAAGDNLLVKIADILREQVEGHGFVARMGGDEFMIVIDN-ADLNQ 484

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +  ++ MP ++ ER I V+ASIG   + +       +++NA+ AMY AK  G 
Sbjct: 485 GKTIAHKLNLALRMPYHIEERTIFVSASIGICEYPTHGHNGETLVRNADTAMYCAKRNGR 544

Query: 690 NHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    +          +I  +  L  A++N EL + + P + L     VG EAL++W HP
Sbjct: 545 DQFRVYTDEMTLEVNDLIDTNIGLHRAIKNDELVVHFQPKVNLDTGATVGAEALVRWQHP 604

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLL 806
             G +  + F+ +AE+  +I  I+ ++  ++A  + +W+     +P + I IN +++   
Sbjct: 605 SLGLLPPASFLEVAEKSDLIIEIDKWVFRKVASLLANWKTHHVPLPEMLISINFSARMFY 664

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            ++L E +QA++ +T  S S   L  +E  +M + +     + RL + G  + +DDFGT 
Sbjct: 665 MSDLAEQLQAILDETGGSASDFMLEITERDMMRDVDTCADTINRLHQKGFKIAIDDFGTG 724

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LS L  +  D +K + S +   +     + I  +++ +A+ ++  ++A+ +      
Sbjct: 725 YSSLSVLKNLSADCLKLDRSFIKDISHSNVDLEITCAVMKLAQVLDLAVVAEGVETHEHA 784

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             L  +GCD  Q  + + PL  +  L  L+      + T
Sbjct: 785 NTLRGIGCDLAQGFYFSKPLAVDKWLAFLESESTPPRET 823


>gi|149189327|ref|ZP_01867613.1| hypothetical protein VSAK1_10383 [Vibrio shilonii AK1]
 gi|148836886|gb|EDL53837.1| hypothetical protein VSAK1_10383 [Vibrio shilonii AK1]
          Length = 934

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 131/581 (22%), Positives = 250/581 (43%), Gaps = 18/581 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     V    +  + +       +     + + +   D +           +    +  
Sbjct: 362 FGTHLDVTEKSHAEEELRMS----ASVFDNTREGILILDNLGLVRRVNEAFISANDYSKE 417

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     L  +        R           G  + E  +   D Q +  ++ I  + 
Sbjct: 418 ELLGHS---LESMIDESESQVRYAELKQKVLSNGFWRGELWLVRKDGQAYPELVSITAVR 474

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +S   +   + +  DI+  K+  + +   A  D LT +PNR   + +++ +L     +  
Sbjct: 475 DSQNRLSNVVALFTDISRLKEQEKQLELLALYDPLTKLPNRNLLVTKVSELLKF--NEFG 532

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ ID+D++KKIND  G  VGD+ L  L   + + +   DIL R  G+ F I+L +
Sbjct: 533 RYMAVLFIDLDEFKKINDSFGHEVGDEALKLLASTLSKNIPSNDILVRWGGDEFIIVLNN 592

Query: 624 ENNSLKIADFAIAMRKSIA-MPINLL-EREITVTASIGFASWTSSK-ITSSEMLKNAELA 680
             +  K+  +A  +   I+ M            +ASIG     +        +++ A+LA
Sbjct: 593 VRSEDKVKSYASKLLNIISTMRFKTDLIHPQPFSASIGVTMTEADSVTDIEHLIRQADLA 652

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY +K +GGN +  F     RS R        L  AV  +EL L + P + L   E++G 
Sbjct: 653 MYESKLQGGNSISFFNPEHDRSKRKRHAKKRQLEQAVSENELELYFQPKMNLRSNELIGA 712

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G ++  +F+   E   +   I  +++ +    +  W        I + I
Sbjct: 713 EALLRWNHPDKGVLTPEQFLFDIETPALQCEIGDWVMTQAVHQVSEWMKCG--MDIQLSI 770

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++S  L D      ++AL+S+    PS +++   ES  +   ER++ ++ R +  G+S+
Sbjct: 771 NVSSYQLDDINFTSRLRALLSQYKVPPSYVQIEILESSALELVERAQAVIERCQSFGVSV 830

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL  +P D +K + S + G  +      +L++++ +A   + T++A+
Sbjct: 831 AIDDFGTGYSTLSYLRDLPADVLKVDKSFIIGLQKDSKNWGLLKAVMSLASTFDKTVVAE 890

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +      + L  +GC+  Q   +A P+      +  ++  
Sbjct: 891 GLEDWDAKELLLEVGCEIAQGYAIARPMKIEQFNRWYRQEQ 931



 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 55/153 (35%), Gaps = 3/153 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             V+  + +T   ++    + +R  +  +  +    W W+I    V      A +LG   
Sbjct: 230 IRVVNQMFSTIKATRMKLLEEQRDLNSVIAATKIGTWYWNIKSGEVKFNERWAEMLGYRL 289

Query: 443 GSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +     + W    H  D       L           + + RV+    Q+ W++ R + 
Sbjct: 290 AELEPLTFKTWEKLCHPEDFVQSEEQLKRHFEGSLEVYECQCRVQHKSGQWLWILARGQV 349

Query: 502 MSNSN-GDILRYIGIANDITEQKKSLEGILCNA 533
           +     G+ +   G   D+TE+  + E +  +A
Sbjct: 350 VKWEKTGEPIEMFGTHLDVTEKSHAEEELRMSA 382


>gi|150375833|ref|YP_001312429.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150030380|gb|ABR62496.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 564

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 119/430 (27%), Positives = 203/430 (47%), Gaps = 13/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+PNR+ F D+L   L      +  +  +M ID+D +K IND LG   GD
Sbjct: 132 LHQATHDVLTGLPNRRQFSDQLRGAL---PVPNGAQVALMQIDLDDFKPINDTLGHGAGD 188

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     RI  +L+  +   RL+G+ F +I    +   +    A A+  +   P  +  
Sbjct: 189 AVLKMAADRIRSILRDREFAYRLAGDEFAVIQWRSDQPSEAERLADALINAFKEPFMVEG 248

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             + V AS+G A          +++K A++A+Y AK  G     +F  S          +
Sbjct: 249 INVFVGASVGIAVAPEDGNEVEQLMKAADIALYAAKKDGRGRSSTFTRSMLVVLEQREML 308

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++  + +L Y P+++     + G EAL++W HP  G I  + F+ +AE   ++
Sbjct: 309 RRSLRTALQEGQFFLEYQPLVKPSS-SVAGFEALLRWRHPLVGTIPPNVFIPMAEADGLM 367

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LER  R  + W          + +N++  + L   L + +   +        R
Sbjct: 368 SDIGRWLLERACRTAMDWPSH-----FTLAVNLSPAEFLHEGLTDRVAQTLDLVGMRADR 422

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ESV++     +   L  L  +G+ ++LDDFGT  S LSYL   PFDT+K +   
Sbjct: 423 LELEITESVLLERTINNLDTLNTLNVLGVQISLDDFGTYYSSLSYLKNFPFDTIKIDQYF 482

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      EK   I+RSII +A  +   + A+ +        L + GCD +Q   + +P+ 
Sbjct: 483 IKDLERNEKGQTIVRSIIALAHGLGMNVTAEGVETAGQAAWLQKEGCDRLQGYFLGAPMA 542

Query: 946 FNSILKLLKE 955
            ++I   L++
Sbjct: 543 ADAIGDFLRK 552


>gi|27365538|ref|NP_761066.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27361686|gb|AAO10593.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 807

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 218/445 (48%), Gaps = 6/445 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D  + ++S E +   A  D+LT +PNR     ++ + +         +  VM +D+D
Sbjct: 359 IRTDFKKLEQSQEQLAYQAKHDSLTKLPNRSLLEVQIVSGIQRCRASGK-QLAVMFVDLD 417

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND  G  VGD++L+ +  +  +LL+  D +AR  G+ F       ++  +    A
Sbjct: 418 NFKKVNDQHGHKVGDELLLRVGEKFSQLLRAGDSVARFGGDEFVFCFAELSSKDEAEMLA 477

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
            ++R+S+     L    ++ + S+G A +     ++ +++ NA++ ++ +K  H+G    
Sbjct: 478 ESVRRSLTDHFILHGALVSTSCSVGVAMYPQDGDSADQLIANADIVLFRSKAQHKGQVMF 537

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               ++       +++++L  A+E  EL + Y P +     +I G+EAL +W +   G +
Sbjct: 538 YDQSINEQVQYDFLLEDELKYAIERDELEVYYQPQVNPRTGQIEGVEALCRWTNGYLGAV 597

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ IAE    I AI  F+L +   D+  W  Q     + + INI+ K LL      
Sbjct: 598 SPMKFIQIAEISGQIFAIGDFVLRKACLDMK-WLAQTTGRTMPVSINISPKQLLQKGFVN 656

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           G+  +  +       I L  +E+V +   E  + ++  LR++G  ++LDDFGT  S LSY
Sbjct: 657 GVYCVTRELDIDCRLITLEITENVFIEELEEVKPIMEELRQLGFHISLDDFGTGFSSLSY 716

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S ++    +    +++++I+ +  +    ++A+ +        L ++
Sbjct: 717 LNALPISEIKIDRSFVSNMLSRSQSESLVKTIVAIGHSNRIIVVAEGVETVDQQIRLHQL 776

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD +Q    + P+    ++ +++ 
Sbjct: 777 GCDRLQGYLFSKPVSLKDLVNVIEA 801


>gi|81300191|ref|YP_400399.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|81169072|gb|ABB57412.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942]
          Length = 889

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/738 (21%), Positives = 306/738 (41%), Gaps = 27/738 (3%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYIT 286
            ++     D   +  ++ L           S+    S  +      L        V  +T
Sbjct: 172 SLITIWMGDSLGIFLVLPLYDAWRQ-----SKTINQSKFLWLGLGVLSL------VIVLT 220

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
            + +    +L         +   +  +  A      +   +    +G    + L P    
Sbjct: 221 LTFVLYPVLLGISLLALLGLALRVGLLGSAIGATLLSVISLLATRRGLGPFIRLAPDNPY 280

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT--VIQHVLATGYFSQGIFSDG 404
           + +  +   +++   +              L  I+   T  +I  + A     + +    
Sbjct: 281 LAVILLMFSISLAVHIVALQYAELRRQRDHLQAIINEQTNYLIDEIEALDKTQKELEDAR 340

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DN 463
           +     +  +  IV   D+    +   P    + G     + G   +W   I   DR  +
Sbjct: 341 DFAENLIQTANAIVLLLDLNGCILELNPTAEEVTGYQRSEILGK--DWFESIVPRDRYPH 398

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 +          +E  +     +  +++ R   +   N + + +I    DIT+++
Sbjct: 399 VWEQFKNCSSEEI-PHNFENPIITKSGKERYIVWRNSKIF-KNNECVGFISFGIDITDRR 456

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + +   A  D LTG+ NR    ++   +L L+     +   V+ ID+D++K IND  
Sbjct: 457 DNEKALERQACYDFLTGLANRFLLQEQGQELLLLAKRSQEM-LAVIFIDLDRFKDINDNF 515

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VLV + +RI + ++  D++ARLSG+ F +IL +  ++   A  A  +++ I  
Sbjct: 516 GHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPN-TDAQGAATLAQKLQQQITP 574

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           PI + +R I +T S+G + +         ++K A+ AMY  K  G +    F  +     
Sbjct: 575 PIAIGDRSIQLTTSLGISLFPVDGDDLEILIKKADTAMYSIKEGGRDAFSFFTATIGQRL 634

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ I+  L  A+ N +  L Y P I L D+ I+GLEAL++W HP  G ++   F+ IA
Sbjct: 635 QERLEIESGLRSAIANQQFELFYQPQISLQDDSIIGLEALLRWHHPHLGLLTPKSFLPIA 694

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            E+ +++ I  ++L+        W+ Q     + I IN +   +   E C  +  ++++T
Sbjct: 695 IEIGLMEEIQQWVLKTACTQNAVWQAQGLK-SVPIGINFSGFQIQ--EFCPQIFEILNET 751

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +E+++       +  L +L+ +G+ +T+DDFG   S L+ L     + +
Sbjct: 752 TLRPQYLELELNEAILADPDSGLKQGLIQLKNLGLKITVDDFGCSDSTLASLQNKGLNRL 811

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL+      +    I+ +II +   +E  ++A+ +  E   + L    C  IQ   
Sbjct: 812 KIDASLIQALEVDQAIQTIVSAIIDLGHKLELRVLAEGVETEFQRQWLQEHQCHEIQGYL 871

Query: 940 VASPLGFNSILKLLKERF 957
           V  PL    I  +L+E+ 
Sbjct: 872 VYLPLPAEDIPAILREQQ 889


>gi|74316634|ref|YP_314374.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056129|gb|AAZ96569.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 674

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 212/436 (48%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +          +D LTG+PNR    DRL   L  +         VM ID+D++K++ND L
Sbjct: 230 RFSRERERLVTKDTLTGLPNRMLLRDRLEQALARARRR-GTLVGVMFIDLDRFKRVNDTL 288

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD+++  + +R+  + +  D +ARL G+ F ++        +I      +R ++A 
Sbjct: 289 GHASGDELICEVGQRLRAIARDEDTVARLGGDEFVVVANDARGVGQILHIVEKVRAALAA 348

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  + ERE+   +SIG + + +     S +LKNA+ AMYHAK  G +  + +   +++  
Sbjct: 349 PYRVGERELFCCSSIGISVFPNDGADCSSLLKNADTAMYHAKGSGRDRFQLYDAGMNAMA 408

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ ++ DL  A+E  E  L Y P I L    +  +EAL++W+HP+ G ++ + F+ + 
Sbjct: 409 EERLQLETDLHYALERGEFVLHYQPQIDLTSGRVCAVEALVRWNHPQKGVLAPASFLEML 468

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +   +L    +    W        + + +N++ K+     L   +   +  +
Sbjct: 469 EETGQILDVGRALLLAACQQTAQWHAA-GFKDLDVAVNLSGKEFWHGSLISSISEALKLS 527

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +++  +ES+ M + + +   +  L+ +G+++ +DDFGT  S L++L   P + +
Sbjct: 528 GLPAQFLQIELTESIFMKDIDNAVARIQALKALGVAVAVDDFGTGYSSLAHLKRFPVNVL 587

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +          A++ SI+ ++  +    +A+ +     +  L ++GC  +Q   
Sbjct: 588 KIDRYFINELPTASVNEALVASILALSDGLHLDAVAEGVENIEQLARLRQLGCRIVQGYL 647

Query: 940 VASPLGFNSILKLLKE 955
           V+ P+    +  LL+ 
Sbjct: 648 VSKPVAAEQLTALLRR 663


>gi|77463908|ref|YP_353412.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           2.4.1]
 gi|77388326|gb|ABA79511.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           2.4.1]
          Length = 789

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/633 (22%), Positives = 269/633 (42%), Gaps = 28/633 (4%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + A  ++    +   + +  +  +  ++P  +  L  +   +     +            
Sbjct: 135 LVAVPMLRHGVLAGRVLLGWQTASSDLRPEDLAALQSLAEAMHAAAERRESERLTTEAAA 194

Query: 401 FSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYI 456
               +R  L   +  S   +  +D     V    + A +LG  +  + G     +    +
Sbjct: 195 ALQEDRLLLESILRTSTSAILAFDADARIVFANDEAAALLGTDANRLPGCTLEGVGCRLL 254

Query: 457 HINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                      L     +   +        + AAD +   + I   P++      +R + 
Sbjct: 255 SREGEPLPPEALPVARAIAEGQTLRDLHHVLMAADGRQRILSINAAPVAAGAATAVRVVA 314

Query: 515 IANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +D+T         + +L      AF D LTG+ NR+  ++ L   L   A  +    +
Sbjct: 315 TIDDVTGQVSADSALRTALAEAHQLAFFDPLTGLYNRRGIVEVLRDCLQTCAR-EKAFLS 373

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D  +++N   G  +GD VL +L  R+  L +    L R+S + F  +   E + 
Sbjct: 374 LLYIDLDGMRQVNGTRGHWLGDRVLQALGARLDNLRQDGGDLGRISADEFV-LTCGETHP 432

Query: 628 LKIADFA------IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 A        + +S+  P  +    + VTASIG A+ ++ + +   +LK  +LA+
Sbjct: 433 DAAGAVAAAEAEAQRILESLREPFVVDGLTLEVTASIGLAAISA-EDSVEGLLKGVDLAV 491

Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVG 737
             AK  GG+   ++R    +    RV + ++L  A+   E  + + P++       EIVG
Sbjct: 492 MAAKAAGGDRACAYRADMEQDMVGRVALAQELREAIRRDEFRIYFEPMVSLGETGLEIVG 551

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+HP+ G ++   F+  AEE   I+ I+ ++L   A+++  W +      + + 
Sbjct: 552 QEALIRWEHPQRGLLAPIAFIPFAEETGFIRDIDRWVLRAAAQELARWAEDPARRHLGVS 611

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+S   L  E  + ++ ++ +T   P+RI+L  +E  ++ N   +R  +  LR +GIS
Sbjct: 612 INISSAQFLSEEFGQMVREVLDETGVDPTRIELEVTEGTLLSNLGLARTTMMDLRSLGIS 671

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL  +P D +K + S + G ++      IL  II +A  +   ++A
Sbjct: 672 IALDDFGTGFSSLSYLRDLPVDVLKIDRSFLGGLSDSKANRTILEGIIGLASGLGVALVA 731

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + +        L   GC   Q      P+    
Sbjct: 732 EGVETPAQFAWLRAKGCRTFQGYLFGRPVDEAQ 764


>gi|315127029|ref|YP_004069032.1| sensory box protein [Pseudoalteromonas sp. SM9913]
 gi|315015543|gb|ADT68881.1| hypothetical protein PSM_A1957 [Pseudoalteromonas sp. SM9913]
          Length = 748

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 129/518 (24%), Positives = 245/518 (47%), Gaps = 17/518 (3%)

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN---SNGDI 509
              +   D +    ++D  +     ++ +E+++     +      R  P+ +   +N  +
Sbjct: 235 RDIMPPEDANPILAVIDKTLQTNEVQV-FEYQLNIK-GKQLTFEGRTAPLESYQPTNPSL 292

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +A DI+ +K + E +   AF D LT +PNR+   DRL+  ++      +    ++
Sbjct: 293 RHVVWMARDISNRKAAEEEVQRLAFFDPLTNLPNRRMLNDRLSMYVERIKQSHH-SGALL 351

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL- 628
            +D+D +K+IND LG   GD++LV L++R+  +L   D LAR+ G+ F I++    +S  
Sbjct: 352 FLDLDNFKRINDSLGHNAGDEILVELSQRLTAILNPADTLARVGGDEFIILIEHVGDSHM 411

Query: 629 ----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +    A  ++        + +    V+ SIG     +S   ++ +LK A+ AMY +
Sbjct: 412 QANSESELIAKKVQSVFYEKFEVGDLAFQVSCSIGICLINTSNAITANILKFADTAMYRS 471

Query: 685 KHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +GGN    +  +      ++  ++ D+  A+   E    + P + + D  +VG EALI
Sbjct: 472 KMKGGNSSSFYDPALQTLLENQTELETDIVRAIACDEFCAYFQPQLAI-DGTLVGAEALI 530

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIA 801
           +W+HP  G I  + F+ IAE+  +I+ +   +L  I   + + RD         + INI+
Sbjct: 531 RWNHPTKGLIPPNAFIPIAEQFGLIQKLQNIVLRDICILLETLRDNNLLDDSFSVSINIS 590

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                 + L   +   I     SP+RIKL  +ES++ G+   +   +  L+  G   ++D
Sbjct: 591 QCQFNSSTLKGELFKAIEAFDVSPTRIKLEITESMLAGDLMGTVKQMEELKSQGFVFSID 650

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L +L   P D +K + S +    ++    +I++SII +  ++   I+A+ + 
Sbjct: 651 DFGTGYSCLKHLSVFPIDELKIDKSFIDKVLNSASGQSIVQSIIGLGHSLNINIVAEGVE 710

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               +  L  MG + +Q    A PL  ++ L   K+  
Sbjct: 711 SAEQLTILKSMGVNAVQGYLFAKPLTHSNYLTWHKQHQ 748


>gi|13471756|ref|NP_103323.1| hypothetical protein mlr1828 [Mesorhizobium loti MAFF303099]
 gi|14022500|dbj|BAB49109.1| mlr1828 [Mesorhizobium loti MAFF303099]
          Length = 614

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 222/446 (49%), Gaps = 13/446 (2%)

Query: 521 EQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           E++  +    I   A  D LTG+PNR    D +   L     D+     V  +D+D++K 
Sbjct: 175 ERRVEQRTAQIQHLATHDILTGLPNRGLLADTMDEALRSLRDDEK--LAVHCVDLDRFKP 232

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  +GD +L ++ +R+        ++AR+ G+ F I+ +  + + +    A  + 
Sbjct: 233 VNDTLGHPIGDQLLGAVAKRLKHHAGETAMVARIGGDEFVILQLLLDGNDEAGVLASRVI 292

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            +++   ++   +I +  SIG A +      S  +++NA+LA+Y AK  G     SF   
Sbjct: 293 HALSDEFSIQGHKINIGGSIGIAVFPDDGQNSETLIRNADLALYKAKMEGRGTCRSFEPG 352

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +   +R  ++ +L L V+  +  L Y P+      ++ G EAL++W+HP+ G ++ SE
Sbjct: 353 MDARLQERRQLESELALGVKKEQFVLHYQPLHDAKTSQLTGFEALVRWNHPRLGLLAPSE 412

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I A+  +++ R   D   W       P+ + +N++        L   + A
Sbjct: 413 FIQLAEETGAIDALGEWIMRRACADAAKWPQ-----PVKVAVNLSPAQFKQQGLSLQVAA 467

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +   PSR++L  +ESV++ N E +   L  LR +GIS+ +DDFGT  S LSYL   
Sbjct: 468 ALAASGLLPSRLELEITESVLLANNENTLNTLYSLRDLGISIAMDDFGTGYSSLSYLRSF 527

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF+ +K + S ++    + +  AI++++  +   +  T  A+ +  E   + +   GC  
Sbjct: 528 PFNRIKIDRSFVSLMCESSESRAIVKAVAELGTTLGMTTTAEGVETEDQYRLVKENGCTD 587

Query: 935 IQDSHVASPLGFNSILKLLKERFPLV 960
           +Q  +   P+  + +  L ++   L 
Sbjct: 588 VQGWYFGRPMPASELHTLFEQPEALT 613


>gi|311280545|ref|YP_003942776.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
 gi|308749740|gb|ADO49492.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
          Length = 636

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/433 (29%), Positives = 222/433 (51%), Gaps = 16/433 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +   E +   A+ D+LTG+PNR  F  ++  ++     D      VM+ D+D++K +N
Sbjct: 214 DLQNKNEKLEYVAYHDSLTGLPNRLLFWQKMQELI-----DTKSAVVVMLFDLDRFKAVN 268

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G   GD +L+ +  R+   +    +L RL G+ F  IL S+    +    A A+R +
Sbjct: 269 DTMGHDAGDKLLIDIAERLSLFINESVVLYRLGGDEFA-ILSSDMTEKQAYSLACAIRDN 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           I+MP  +    ++V   IG    + ++  +  + K  +LA+Y AK  G  +V +F+    
Sbjct: 328 ISMPYQVYGTSVSVETCIGLIVSS-TETRADYLYKCVDLALYDAKSIGPGNVRNFQQYML 386

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               D    + DL  AV+N+EL + Y PI   +  EI G EAL++W HP  G IS   F+
Sbjct: 387 EDLLDNRSFENDLANAVKNNELVVYYQPIADAVSGEIYGYEALLRWFHPARGAISPEVFI 446

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I +I  ++L +  +    W      P   + +NI+   LLD  L + +++ +
Sbjct: 447 PVAEKTGLIHSIGAWVLAQACQQATQWA-----PSTRVAVNISPLQLLDESLPDIVRSEL 501

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K     +R++L  +ES  +    RS   L  L  +G+S+++DDFGT  S LS L    F
Sbjct: 502 KKNGLDAARLELEITESNFVNQSARSLATLRALSNLGLSISIDDFGTGYSSLSRLSSFAF 561

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++  T++   + IL++I+ + K++   IIA+ +  E+ +  L  +GCD IQ
Sbjct: 562 DTIKIDRSFVSNITQQHGDLNILKAIVSLGKSLNMRIIAEGVETEVQLNYLKTLGCDLIQ 621

Query: 937 DSHVASPLGFNSI 949
              +  P     +
Sbjct: 622 GYLIGKPAPPGQL 634


>gi|94263449|ref|ZP_01287262.1| GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93456179|gb|EAT06318.1| GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 654

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 110/429 (25%), Positives = 207/429 (48%), Gaps = 11/429 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR++ L++L   +            ++ ID+  ++ +ND +G   GD +L+  
Sbjct: 225 DPLTGLPNRRNLLEQLERSIAQHLRAKQ-HGALLGIDLGGFRVVNDTMGHDAGDLLLIEA 283

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLER 650
           +RR+   ++  D++ARL  + F ++L   N+     +++  + A  +R++I  P  +  R
Sbjct: 284 SRRLRLYVRETDVVARLGSDEFAVVLEYLNDNLNQAAIRAEEVARKLRQAINRPFVINGR 343

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
           E  V  SIG   +        E+L  A +A Y AK  G N +  F  +   +       +
Sbjct: 344 ECHVNISIGICLFGRRDELYDELLIRANVATYQAKKTGRNLIRFFDETMQTALEARAAQE 403

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A++  E  L+Y+  +     + VG EALI+W HP+ G I   +F+ +AEE  +I 
Sbjct: 404 AELRRAIKE-EQLLLYYQPLLNAAGQPVGAEALIRWQHPEKGLIPPGDFIPLAEETGLIV 462

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +    ++ WR Q  +  + + INI++      +  + ++  ++     P R+
Sbjct: 463 DLGRLVLRQACAQLLQWRQQPELAQLTLAINISAHQFRQTDFVDQIEQTLTACSIDPHRL 522

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           KL  +ES ++ N   +R  +  L  +G+++ LDDFGT  S L+YL  +P   +K + S +
Sbjct: 523 KLELTESALLENRGDARAKMDELLAMGLNIALDDFGTGYSSLAYLKNLPVYQLKIDRSFI 582

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI+R+I+ MA  +   ++A+ +     +  L   GC   Q  + + PL  
Sbjct: 583 ANLGSDASDTAIVRAILAMAAELGLEVVAEGVEELTQLDFLREHGCSRFQGFYFSRPLPP 642

Query: 947 NSILKLLKE 955
           +      + 
Sbjct: 643 DEFAAYCRA 651


>gi|254436984|ref|ZP_05050478.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
 gi|198252430|gb|EDY76744.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
          Length = 686

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 125/555 (22%), Positives = 225/555 (40%), Gaps = 20/555 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R + A+L +  ++  +      +   P           S           +   D     
Sbjct: 141 RSAEALLHTDVMITLFCRDGPPLYMNPAARKTFRAPLQSFKAL------LVDPQDFAQMM 194

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D     R     Y            W  + I+  S++       +  A D++E K++
Sbjct: 195 ARIDDVGENRLLTKVYTI------AGTRWFDLSIKSCSDAVTGQPAILLTAIDVSELKEA 248

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A +D LT + NR      L          D     V+  D+D++K IND  G 
Sbjct: 249 RDTARHLAQRDQLTNLHNRSYLQSYLE---GREGRGDTAGCAVIFFDVDRFKLINDRYGH 305

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL  +  R   +L   D++ARL G+ F I++  +++   +       R +I+  I
Sbjct: 306 DAGDTVLKQIATRARAVLSPQDLVARLGGDEFVIVIDGDSSKATLELQVEKRRHAISKTI 365

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
              +  I  T S+G A  +S   + S +++ A++A+Y +K  G N    F      +   
Sbjct: 366 LHDKTRIDATISVGIAGHSSDTDSFSTVMRQADIALYASKQGGRNCTTFFTTEMGDAAIA 425

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  L  AV   E  L Y P + +   +IVG E L++W HP+ G +    F+ I EE
Sbjct: 426 RDKIEAALSHAVLAEEFILHYQPRLDIKSGKIVGAEGLVRWLHPERGMVMPDVFIPICEE 485

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   +LE      I+W          + +N++ +   D      +Q L +K  +
Sbjct: 486 TGLIDELGRIVLEIGCTQAIAWHQAGLDLD--VSLNVSPRQFSDPGFVTTLQDLAAKPGF 543

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              RI+L  +E+V++G   +    L  +  IG  + +DDFGT  S LSY+   P   +K 
Sbjct: 544 PHGRIELEITETVLIGEHNQIAEKLRAITAIGYRIAIDDFGTGYSNLSYISRFPLTCLKI 603

Query: 884 NGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + S +         I++ I+ + + I  T++++ +  +  +  LT   C   Q   +  P
Sbjct: 604 DRSFIDQL-PASGPIVQLILTLGQQIGATVVSEGVETQEQLDWLTDNNCGEAQGYLITRP 662

Query: 944 LGFNSILKLLKERFP 958
           L      + ++   P
Sbjct: 663 LAVGDFERFVQTFAP 677


>gi|16330779|ref|NP_441507.1| hypothetical protein sll1895 [Synechocystis sp. PCC 6803]
 gi|2829614|sp|P74101|Y1895_SYNY3 RecName: Full=Uncharacterized protein sll1895
 gi|1653272|dbj|BAA18187.1| sll1895 [Synechocystis sp. PCC 6803]
          Length = 696

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 6/452 (1%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +         DITE+K   + I   AF D LT +PNR  F   L  +L     + +    
Sbjct: 238 ESQFIRSYIFDITERKVIEQSIHYQAFYDPLTDLPNRFLFKQELGKVLSNVQ-NQSSVLG 296

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++   + + +ND+LG +V D+VL  +T R+   ++  D+L R  G+ F +++ S  N 
Sbjct: 297 LVLLGFRELQSLNDLLGHSVADEVLKIITERLSAHVRLEDLLCRWRGDTFILLIQSCRNL 356

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +I  F   +   +  P  +    + +    G A + +       +L    +A+   K  
Sbjct: 357 DEIEVFVRRLLAVLKRPFFIANNPLYLQGYAGIACYPNHGDNVEILLNRVGIALNEVKDI 416

Query: 688 GGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      +  S       R+ ++  L  A+E  E  L Y PII +    + G+EALI+W 
Sbjct: 417 GSRQYCFYEESMNSDHLERIQLEHALHQALERDEFLLYYQPIIDVQSGRLCGVEALIRWQ 476

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +S   F+ + E   +I  +  +++    +    W          I IN++ +  
Sbjct: 477 HPIHGLVSPGLFIGLLETTGLIIPVGEWIMRTAFQHFHHWAPAV-DDDFRIAINLSPQQF 535

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +L   +  +++++   P R+++  +E++VM N   ++ LL  L+  GI L++DDFGT
Sbjct: 536 QAPDLLPTILRILAESSLPPHRLEVEITENIVMQNVTATQNLLNALQSHGIRLSMDDFGT 595

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL   PF+T+K + S       T K  AI+++++ +       IIA+ I  E  
Sbjct: 596 GYSSLSYLKTFPFNTLKIDRSFTKDILHTPKDAAIIQAMLLLGNGFNLNIIAEGIEEEPQ 655

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + L  +GC  +Q    + PL    I   L E
Sbjct: 656 ARCLYDLGCREMQGYWFSHPLSEAEITAFLAE 687


>gi|145297902|ref|YP_001140743.1| GGDEF domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850674|gb|ABO88995.1| GGDEF domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 667

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 128/574 (22%), Positives = 246/574 (42%), Gaps = 34/574 (5%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +  F ++  +       Q        Q   +    D +   D     +         +G+
Sbjct: 118 VALFGMVNEIGQRKELEQTFRQQQLLQRRLLDAIPDPIRLEDHQGLLIDCNQAFLDFMGM 177

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           A+    G                    L + +   RG    E+ +  A+ Q   + I   
Sbjct: 178 AASEALGQ--------------RVAHRLSTELPMGRG----EYCLVDANGQGRHLEITRV 219

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G+ L  + ++ DIT  + +   +      D+LTG+        +L+  L  S  
Sbjct: 220 DVPDDEGNSLGILTLSRDITGLRTTQAQLQQEQHYDSLTGLL-------KLSHFLQTSRH 272

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
               + +++++D+  +++IND  GI V D +L  + RR+ +L +   ++ R++ + F ++
Sbjct: 273 LGARKASLLLVDLQHFREINDRFGIRVADRLLSQVARRLQQLARPQSLVCRVAADDFAML 332

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +    +AD++  ++  + +P  + E  I +   +G A        +  +L +AE A
Sbjct: 333 LPELSEP--LADWSRRLQNELMVPYQIEEHRIQIPVFLGIA--HGRANDAERLLSHAEAA 388

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI-KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           +   K +  +          +  R  +    L LA+++ +L  VY PII   + ++ G E
Sbjct: 389 LAQGKRQQQHCTLFDPELDAKLKRRQLIAAQLPLAIKSGQLTAVYQPIISTRNNQLHGAE 448

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L +W HP+ G IS  EF+ +AEEL +I  +   MLE+    +  W+     P + + IN
Sbjct: 449 LLCRWPHPELGMISPDEFIPLAEELGLIGQLGQRMLEQGCAQLARWQ--GAAPDLVLSIN 506

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++     D +LC  + A I +   +P +++L  +E V+M N +     L  L + G  L 
Sbjct: 507 LSPLQFRDPDLCPQIFACIERHGLAPWQLELEITEGVLMENADEIESNLANLIEAGFQLA 566

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKD 917
           +DDFGT    L+YL  +   T+K + S   G    +   AI+RS+I +   +   I A+ 
Sbjct: 567 IDDFGTGYCSLAYLPRLQVATLKLDRSFTQGLATNQATTAIVRSVIGLGHELGIRITAEG 626

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +        L + GCD +Q    + PL  +   +
Sbjct: 627 VETPEQQAWLVQAGCDRLQGYLFSRPLPPDEFAR 660



 Score = 42.6 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 13/114 (11%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRN---WLPYIHINDRDNFRTILDSFVG 473
           ++  D     +          GL     + G       W       D        D  + 
Sbjct: 31  IFCRDTDGRYLFANRTFVEQAGLQQTEELIGKTDIEMPWGNIFREED--------DRLLA 82

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                L  +    + D    WM I   P+ +  G  +   G+ N+I ++K+  +
Sbjct: 83  EGNPLLYQQLHCNSGD-STRWMEIHKIPLYDEQGKPVALFGMVNEIGQRKELEQ 135


>gi|58039424|ref|YP_191388.1| sensory box/GGDEF family protein [Gluconobacter oxydans 621H]
 gi|58001838|gb|AAW60732.1| Sensory box/GGDEF family protein [Gluconobacter oxydans 621H]
          Length = 787

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 139/704 (19%), Positives = 281/704 (39%), Gaps = 32/704 (4%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
           R    +  + F+   C   L  + F Y      +    +   +   T  ++     G   
Sbjct: 99  RQSWILKGLNFAFALCWITLPPVVFPYGDANDRVLVAGIMVGLTATTITLMPLAGMGEII 158

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A++L+ +  +        W          I     +    ++ + +    +        +
Sbjct: 159 ALMLVLSCCIAL---FQSWEIDHGSFYFYIALELAIYLFFVLSLTMAVRTLFAAFLVSRY 215

Query: 397 SQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
           S    +   +  L  A   +GD +W+          +  +A+  G +   +    RN+  
Sbjct: 216 SLEERNSIVQLLLRNADDDTGDWLWETSTSGTLQNVSASLASAFGNSREWLEN--RNFFD 273

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQY--EFRVRAAD--------NQFHWMIIRIRPMSN 504
            +  +D        D       GRL+   + R+   D         Q  +  +  RP+  
Sbjct: 274 IL--SDLAG-PAAFDRDERTGLGRLRQCLDNRIFFRDIVVSGALHGQQRFWSLSGRPIF- 329

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            + + + Y G+  D+T+   + E     A  D LTG+PNR +FLD + T L  +      
Sbjct: 330 QDRNFIGYRGVGTDVTQTHWAQESASFRARHDLLTGLPNRGAFLDDMETYLIEAERTGEA 389

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +D+D +K+IND  G + GD++L  +T  +   L     L R  G+ F ++    
Sbjct: 390 -FALLNLDLDGFKQINDRYGHSAGDEMLRKVTVVLSRTLSERHRLYRFGGDEFMLLERQT 448

Query: 625 NNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +         +     +PI +       V  S+G             +L+ ++LA+Y 
Sbjct: 449 TPAQAANTATGLINALTNVPIRIGEGVRCAVGLSVGIVLSIGGSERVGSLLEASDLALYE 508

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GG+    +             +   L  A+E   L +VY P      +++ G EAL
Sbjct: 509 AKSLGGHTHRFYNPELRTVAKRNRDLIRALPEALEEGTLGIVYQPFFNTQSQKLCGFEAL 568

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP++G +     + +AEE  +I  + ++++E+       W        + + IN++
Sbjct: 569 IRWSHPEYGRVPPERIIQLAEEAGLIHRLGVYVMEKACVFAREW-----DEGLVLSINVS 623

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L      +    ++ KT +    +++  +E++ M     +  LL RL+  GIS+ LD
Sbjct: 624 VGQLEAPAFLKDTFRILEKTGFPARCLQIEMTENIFMEPDAATFTLLSRLQNAGISIALD 683

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFG   S L YL + PF  +K +G  +     +  A  I+R+++ ++ ++   + A+ + 
Sbjct: 684 DFGKGFSSLGYLRFFPFSKIKLDGLFVRDMLRESRAASIVRAVVDLSIDLGVAVTAEGVE 743

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +  +  L R+GC  +Q   ++ PL      + +     +++++
Sbjct: 744 SQEQLSYLRRLGCTEVQGYLLSRPLSPEDTKQFMATTPAMMESS 787


>gi|114562967|ref|YP_750480.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334260|gb|ABI71642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 751

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 123/583 (21%), Positives = 247/583 (42%), Gaps = 22/583 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSM 445
              LA+    +      +R S          +         ++  P   ++     +   
Sbjct: 173 AARLASLAIERSRGMHIQRLSSKIFNSLPIALVITSEDNSVLSANPIFKSLTSTYYANLK 232

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +  +L +     + +    L   +  R    Q E +    DN    + + +  + +S
Sbjct: 233 LFDVNRFLSH----SQQDVVADLFEHLK-RGHPWQGELKGLKTDNDIIDISLNVTVIRDS 287

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                 +  +  DI+ +K + + I   +  D LTG+ NR+   + L  ++D   + +  +
Sbjct: 288 FTQQNCFAWLITDISARKNAEKMINFQSNYDQLTGLSNRKYLFESLQAMIDSEDSVNGCK 347

Query: 566 --PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              ++M++DID +K+IND LG   GD VL  + +R+   +    ++AR++ + F ++L  
Sbjct: 348 QDFSLMLMDIDHFKQINDTLGHDNGDLVLKFVAQRLLSAIPDNVLIARIAADEFALVLPG 407

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +  S  +      +   +     +  +++ ++ S G A +        ++L  A  AMY+
Sbjct: 408 KMCSESLISLFDDLTNELKKLFIVGGQDVMLSMSTGLARYPHDADNVEQILNCATQAMYN 467

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK RG N ++ F             +   L  A+ ++E  L Y PI+     +I+  E L
Sbjct: 468 AKSRGRNCLQFFNQQIQKDAERHAELYLHLKSALSHNEFELYYQPIVNPFSGQIIKAEVL 527

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W H     IS  EF+ IAEE  +I  I  ++  +    II+ +      P    IN++
Sbjct: 528 LRWIH-DGQFISPDEFIPIAEESGLIVQIGEWVRTQALTSIIALQKSGYAIPF--AINVS 584

Query: 802 SKDL----LDNELCEGMQALISKTL--YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +     L          +            I L  +ES++M        LL  LR  G
Sbjct: 585 TIEFWTSDLQQRFLNYFDNISEALGGEIPYQLITLEITESLMMKQQSSISQLLTELRHRG 644

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           + +++DDFGT  S LSYL   P D VK + S +   +   +  A++ +I+ M++ ++ +I
Sbjct: 645 MQISVDDFGTGYSSLSYLANFPVDQVKIDKSFIQKISLGARHEALIEAIVSMSRALDLSI 704

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +A+ +  E+++  + +   + +Q  +   P+  N    LL ++
Sbjct: 705 VAEGVETEVELNFIKKQNIEAVQGYYFYKPMPKNDFFDLLAKQ 747


>gi|168262587|ref|ZP_02684560.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348577|gb|EDZ35208.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 691

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 221/436 (50%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   ++    ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-ESTSFALLFMDLDGFKTVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWHHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P     I + +++
Sbjct: 669 LGKPRTAEEIARDIRD 684


>gi|146311798|ref|YP_001176872.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145318674|gb|ABP60821.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 709

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/715 (21%), Positives = 282/715 (39%), Gaps = 56/715 (7%)

Query: 258 EIALSSSLII-FLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR- 312
            + ++ S ++ F+  ++  +   +         F       I   +  +       ++  
Sbjct: 8   PVLIAISFLVAFIASFVALDSAGKISGASRKAAFWWQMAGGITLGIGVWSMHFIGMLSMK 67

Query: 313 --------ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
                     L +  L          +        L     L     +   +     +  
Sbjct: 68  MPMAMSYDFWLTATSLGVAILASTSAIHIAVPGNALSLFRWLFSTLILSAGVVAMHYIGM 127

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             +         + ++LI    +  ++A+G      F    R           V+     
Sbjct: 128 AALMFHDQIIWNMTIVLISV--LIAIVASGAALWLAFHLRHRHK--------GVFI---- 173

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            +R+      A ++GLA  +MH    +   + H  D           +    G L     
Sbjct: 174 -NRI----AAAIVMGLAISAMHYTGMSAADFQH--DVHT--------LSGGVGELDLSIW 218

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           V +       +++ I  + +S+    R      D    ++  + +   A  D LTG+ NR
Sbjct: 219 VSSTTLVLLGIMLIISLV-DSHFRTQR----LTD--NLRQLNKQLELQARFDALTGLANR 271

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                 L   L  S  +   +  VM +DID +K IND  G  VGD++L+++ +RI   L 
Sbjct: 272 HQMDISLQDCLHTSLLNKK-QFAVMFLDIDHFKLINDAWGHQVGDELLINVAQRITARLV 330

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               LARL G+ F +++   ++  KI   ++ +   I  P  +    I VT S+G + + 
Sbjct: 331 PGMTLARLGGDEFILLVPDCDD-EKITTLSMTLLDEIRRPFAIGGHAINVTLSVGVSLYP 389

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
               T  E+   A+ AMYH K  G N    +R    +S        +DL  A+E  +  L
Sbjct: 390 QHGETLHELKFKADAAMYHIKQEGRNGWAIYRPEMSKSITAEPSFLQDLTQALEREQFEL 449

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P       EI G EALI+W HP+ G +  + F+   E+  +I  + ++ +E+  R +
Sbjct: 450 WYQPTYLADANEIHGFEALIRWHHPEQGVLLPAVFLPSLEKTGLIIPVGVWAIEQACRQL 509

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W +Q       +  N++       ++ E + + I K    PSR+ L  +ES  + N E
Sbjct: 510 RFWTEQGFGQ-WTLSFNLSPVQFEQQDIFEIITSTIQKYNLEPSRLILEVTESTALKNLE 568

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
           RS  LL    + G  +++DDFGT  S L  L  +P   +K + S +       K   I+ 
Sbjct: 569 RSIELLNAFSQAGFIVSIDDFGTGYSNLLMLNVLPAKELKIDKSFIDSMLDNNKSQKIVE 628

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +II +A+ ++  ++A+ I      + LT +GCDY+Q  + + PL    +  L+ +
Sbjct: 629 TIINVARTMDMVVVAEGIETAEQQQILTNLGCDYLQGYYFSRPLPAEQVPWLVLQ 683


>gi|237798836|ref|ZP_04587297.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021690|gb|EGI01747.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 757

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 246/468 (52%), Gaps = 14/468 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   + D+ R   + + + + + SL+ +   A  D LT + NR+ F       L      
Sbjct: 259 LQGKDHDLKRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLLE-HAH 314

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            ++   VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL
Sbjct: 315 TSVLLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CIL 373

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  +   +  PI L  R + +T SIG A +     +  E+LK+A+LA+
Sbjct: 374 LSVPDYEEARHLAHRVMHRMKDPIGLAGRRMVMTTSIGIAVFPRDGSSCDELLKHADLAL 433

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGL 738
           Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PII L    +  L
Sbjct: 434 YQSKGNGRNRVNFFSPALKTKASLELHLEEELRNALREEAGLQVYYQPIIDLQTGHVAKL 493

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +    P+ I +
Sbjct: 494 EALVRWNHPQHGLLTPDRFISIAEANGLIAELDNWVLRRACHDLGTLRSEGLD-PVIITV 552

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N ++ +L  +EL + ++  ++    +P R++L  +E+ +MGN   + LLL ++R +G+SL
Sbjct: 553 NCSALNLSRDELVDEVRKALADANAAPGRLELEVTENALMGNISNTILLLKQIRSLGVSL 612

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P DT+K + S +     + + + I+++II MA  +   ++ +
Sbjct: 613 SIDDFGTGYSSLAYLKRLPLDTLKIDRSFIVDIPESPQDMEIVQAIIVMAHTLRLKVVTE 672

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE---RFPLVK 961
            +  +  +  L++ G DY+Q    + P     I+  +K+   R P  +
Sbjct: 673 GVESQAQLDFLSQFGSDYVQGYLFSRPQPLERIIPFVKQMNEREPASR 720


>gi|258650469|ref|YP_003199625.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nakamurella
           multipartita DSM 44233]
 gi|258553694|gb|ACV76636.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nakamurella
           multipartita DSM 44233]
          Length = 659

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 106/447 (23%), Positives = 210/447 (46%), Gaps = 7/447 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             G+   +  +  + E +   AF D LT + NR+  ++ +T  L+           ++ +
Sbjct: 167 VAGLLAQLQARVDAEERLRHQAFHDELTDLANRRFLVEEITQRLE---PGTGDPVGLIFM 223

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K +N   G A GD  L  L  R+ E +    ++ARL G+ F +I+    +     
Sbjct: 224 DVDRLKALNSFFGHAAGDQYLQILAGRLRERISARHMVARLGGDEFVVIMGGPTDEATAR 283

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +R+    PI +   E++   SIG A     + ++SE++  A+ AM  AK RGGN 
Sbjct: 284 ALAEKLRQVANQPILVGGEEVSRAVSIGVALGQPGQTSASELMNQADQAMLEAKSRGGNE 343

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F     R++ +   I+  +  A+ +  L L Y P + L D  I+G+EAL++W +P  
Sbjct: 344 IGVFSAQMRRANEIRTDIELHIGTAIRHGALVLHYQPEVDLRDGRILGVEALVRWPNPTL 403

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+ + E   +   +  ++L +  R +  W+       + + +N++   L+  +
Sbjct: 404 GLLQPGAFIDVVEATNLAGELGRWVLGQACRQLREWQLHYPERRLGMSVNVSPAQLITLD 463

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +   ++        + L  +E  ++ + +++   L  L++IG+ + +DDFGT  S 
Sbjct: 464 FVATVAKTLADHELDGQWLTLEITEQALVRDTDQALATLRGLQRIGVKIAIDDFGTGYSS 523

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            + L  +P D +K +   +         +AI++SII +A+++   ++A+ +  EI    L
Sbjct: 524 FAQLKSLPADVLKIDRGFVRDLGTDFDDLAIVQSIIGLARSLGLDLVAEGVETEIAASTL 583

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954
             +GC   Q    A P     I ++++
Sbjct: 584 VDLGCTRAQGFLFAGPRPPAEIEQMIQ 610


>gi|99080013|ref|YP_612167.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99036293|gb|ABF62905.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 685

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 215/431 (49%), Gaps = 9/431 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LTG+PNR     +L  +      ++  R  +M ID++ +K++NDV G
Sbjct: 246 ARDQLNHAATHDPLTGMPNRMWLTRKLDALKIRLDENETRRCAIMTIDLNLFKEVNDVYG 305

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + GD VL  +  R+ +     + + R+ G+ F  I        ++  FA  +  +I  P
Sbjct: 306 HSAGDAVLRCVALRMMQHEGEGECVTRVGGDEFVAIKEGFRRMEEVLSFAERLHAAIVEP 365

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           ++L +  + V ASIG A+        +++L  +++AMY AK      +  F   +     
Sbjct: 366 VDLEDVSLRVGASIGIATTMDDGRDPADLLHKSDVAMYRAKSDPDTPICRFNAEMDRRSR 425

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  I  DL LAV+N E  LVY     L   E VG E L++W+HPK G +S   F+ IAE
Sbjct: 426 EKTQIVHDLRLAVDNDEFELVYQLQNALDTMEPVGFEVLLRWNHPKRGRVSPDVFIPIAE 485

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I+ I  ++L    R+   WR      P  + IN+A + L+     E +  ++ +T 
Sbjct: 486 ETGLIRDIGHWVLREACREASLWRR-----PFSVAINVAPQQLVQPSFVEDVMDILMETG 540

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+R++L  +E+ ++ +   +  ++ +L+ IGI + +DDFGT  S L+ L   PFD +K
Sbjct: 541 LDPARLELEVTEASIIDDQAHTLKVMHKLKSIGIRIAMDDFGTGYSSLATLQAFPFDKIK 600

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    +   R AI+RS + +   ++  ++A+ +  E +++ L    C  +Q  + 
Sbjct: 601 IDRSFVQDVHKDAQRAAIVRSTLLLGAALDIPVLAEGVEVEDELRFLRAESCSSVQGFYF 660

Query: 941 ASPLGFNSILK 951
             P+  + +  
Sbjct: 661 GKPMPRDDMRA 671


>gi|238754897|ref|ZP_04616247.1| phosphodiesterase [Yersinia ruckeri ATCC 29473]
 gi|238706908|gb|EEP99275.1| phosphodiesterase [Yersinia ruckeri ATCC 29473]
          Length = 862

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 210/441 (47%), Gaps = 7/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S   I   A  D LTG+PNR  FL     ++  +         V+VI+ID +K++N
Sbjct: 423 ERECSRMKIQQLALYDALTGLPNRAQFLTHANQVIGDAQQC-GYSLLVLVINIDHFKQVN 481

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G A GD++L  + +R+ + +   DI+ RL+G+ F +IL   N   +       +   
Sbjct: 482 DSMGQAAGDELLCIIAQRLRDDMGKNDIVGRLAGDEFVLILAPCN-IQQATVRVERLLSR 540

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +A IG + +  + +  + +L +A++A   AK RG    + F     
Sbjct: 541 LSQPCQISGMTIVPSAGIGISLYPENALEINSLLHHADMAKGKAKKRGRGQFQFFSAEMN 600

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +++ L  AV  + L L Y P ++L D ++ G+EAL +W HP  G I    F+
Sbjct: 601 EINMQRQTLEDALRQAVHLNTLQLFYQPQVQLDDGQLYGVEALSRWYHPTLGEIPPQRFI 660

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A+E  +I  + L+ +    R +  WR +    P  I +N++  +  +  L E +  ++
Sbjct: 661 PLAQECGLINELALWTINEACRQLADWRLRGINVP-SISVNLSPTNFHNLGLPEIIAHIL 719

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  + L  +E +++ N      ++G++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 720 QRNNLPPKHLTLEITEDILIDNNPIIFAIIGKIHQLGVRLSMDDFGTGYSSLSYLRRLEL 779

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +          A+  ++I + ++++  ++ + +  E   + L   G    Q
Sbjct: 780 DEIKLDKSFVNDLEHDETSRALSEAVIRIGESLQLAVVVEGVETEAQRQLLRLQGYQVGQ 839

Query: 937 DSHVASPLGFNSILKLLKERF 957
               + PL        +K   
Sbjct: 840 GYLFSEPLQAVDFELWVKSHL 860



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 9/133 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--- 453
           ++  +S+ E    A+  S   + ++D+    V    +     G   G + G   +     
Sbjct: 13  ARSSYSENEALLQALNLS-LAIIEFDLTGVVVNVNQNYLDYFGYQRGEVIGQPHSLFCKQ 71

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            Y+   +     + L +        L+  F  R  D    W+    +P+   +G     +
Sbjct: 72  DYVGSKEYHELLSCLQA-----GKSLEGRFERRHKDGSPVWLAAIYQPVPGPDGKTTHMV 126

Query: 514 GIANDITEQKKSL 526
            IA +IT+Q    
Sbjct: 127 KIAKNITQQVALE 139



 Score = 38.8 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        + G  +    G        +   D     +   +++       +  +    
Sbjct: 173 LYINQGFTKLFGYTTQQALGQPIA--ALLQNGDTAPSLSAETTYIHQALQPEELFY---G 227

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            ++Q HW  + I  + +  G     IG+  DIT  K
Sbjct: 228 QNHQPHWCSVTINSLYDEQGHSSFTIGVLTDITLTK 263


>gi|296114447|ref|ZP_06833100.1| hypothetical protein GXY_01666 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978803|gb|EFG85528.1| hypothetical protein GXY_01666 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 213/440 (48%), Gaps = 8/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  + + I   +  D+LTG+ NR S    L  ++  +  + N    + ++DID+++ IN
Sbjct: 282 EQNATKQHISHLSNFDSLTGLLNRSSVHKVLEGMI--AKQEGNHHFAIFMLDIDRFRDIN 339

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV +  RI  + K   I++R  G+ F + + +  N      FA  +  +
Sbjct: 340 DALGHVYADQFLVEIAHRIRSIAKDDYIVSRSGGDEFVVAVPNCRN-DDAIKFAEMLIST 398

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ + +  +T++ S+G +++  +   S  +L NA++AM  +K  G            
Sbjct: 399 IAKPMQIGQNTLTISCSVGISTFPDNGPDSESLLSNADVAMRQSKLDGRGTYRFANSEKN 458

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 459 QVAQDRLVLGSALRDSLARGALNLHYQPQVRTHTLELCGVEALSRWHHPHLGNIFPSRFI 518

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L+   R ++ W       P  + +N+++    +  L E +  L+
Sbjct: 519 AVAEETGQIEAIGRWSLQESCRQMVQWDKDGIHVP-TVAVNLSAVHFRNRALPEYISNLL 577

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +P R+ +  +ESV+M +   +  +L  +R +G  L++DDFGT  S LS L  +P 
Sbjct: 578 DHFNLTPDRLTVEITESVMMDSSSDTEEVLQAIRTLGAGLSMDDFGTGYSSLSRLTRLPL 637

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E   + L  + CD +Q
Sbjct: 638 TEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRRLLEELKCDVMQ 697

Query: 937 DSHVASPLGFNSILKLLKER 956
               A PL    + + +++R
Sbjct: 698 GYLFAKPLAPKDLEQWVRQR 717



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 4/170 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDR 461
             E    A+  + D     D   + +        + G+   ++ G  +   +P  H  D 
Sbjct: 7   SAEVLLSALEQAIDATVIIDDKNNVIFFNKAAENLWGIPRQNVIGKNVSALVPLQHRADH 66

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D+F          +      E      D ++    + +  +      I  Y+G+  ++T 
Sbjct: 67  DSFIDTNRRTGISKIVGTSREVEFARTDGEYICGELSLSKVLTGEDRI-YYMGVMKNVTN 125

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +  S +  +     D L  + +     D    +             V+++
Sbjct: 126 E--SQQRKILILQNDVLQALASDMLIQDVADLLCRRVEGFVPGAVAVLML 173


>gi|197248236|ref|YP_002148312.1| ggdef domain/eal domain-containing protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211939|gb|ACH49336.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 691

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 220/436 (50%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGSSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEASDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P     I + +++
Sbjct: 669 LGKPRTAEEIARDIRD 684


>gi|265992624|ref|ZP_06105181.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
 gi|262763494|gb|EEZ09526.1| diguanylate cyclase/phosphodiesterase [Brucella melitensis bv. 3
           str. Ether]
          Length = 678

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 134/565 (23%), Positives = 249/565 (44%), Gaps = 38/565 (6%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWL--- 453
           + +    ++ +         +  +D  +           ++ +A  + +HG     L   
Sbjct: 121 RALRCSAQQYAA-------GLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLEVLLRY 173

Query: 454 ----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                    ND  N R  ++  +  R+ R    F++        ++        +S    
Sbjct: 174 CVKQGLFPHNDLTNIRLRMEDILMGRKAR--DIFQLSDR----RYIECIGNQTVSS---- 223

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N +  ++
Sbjct: 224 -GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSL--RPHQDQNSKVALI 280

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + ++S +
Sbjct: 281 VIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNLHDSSE 340

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +  ++    +L   ++ +  S G A     K     M   A+LA+Y AK    
Sbjct: 341 VNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEAKGEEN 400

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
               +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL +W+H 
Sbjct: 401 RQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALARWNHA 460

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW D      I + +N+++ DL +
Sbjct: 461 ELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGD-----KIVVSVNLSAIDLKN 515

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N++   +   + K+     R+++  +ES ++ +  ++ L+L RL+  GI++ LDDFGT  
Sbjct: 516 NDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDDFGTGY 575

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P   VK + S +   T  R +  +LR +  ++  +   +  + +  E  + 
Sbjct: 576 SSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVETEEQLA 635

Query: 926 ELT-RMGCDYIQDSHVASPLGFNSI 949
            +    G D +Q      PL    I
Sbjct: 636 LIRVAAGADLVQGYLFGMPLPTEEI 660


>gi|254492442|ref|ZP_05105614.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462334|gb|EEF78611.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 945

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/575 (20%), Positives = 239/575 (41%), Gaps = 20/575 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   + +   +    +  +  + +     +  +  ++   D     ++       + G +
Sbjct: 372 MEQAIKERTDSLNLRTVELRDERDFVKNLIDTAQLMIITLDKQCKIISFNQFSEQMTGCS 431

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH---WMIIR 498
              + G         +    DN    L+          Q E      +       W+   
Sbjct: 432 EQDVVGTAIQPF--FNAQQWDNVHATLNELTHSHLAVSQLETDFIHKNGDVRVISWLHSS 489

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +   ++        + +  D+T++K+S E +L  A  D LT + NR+ F      +L+ +
Sbjct: 490 LTVANDD----AVILSVGLDVTDKKRSEEQMLWMANHDALTELYNRRKFNSDFKKLLNQA 545

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    ++ +D+D++K IND  G  VGD +L  + + +  + +  DI+ARL G+ F 
Sbjct: 546 QRYKR-EGMLLFLDLDQFKDINDSCGHNVGDQLLQRVAQSLLAISRSTDIVARLGGDEFA 604

Query: 619 IILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           IIL  E +          +  S+     +  +   T++ SIG   +  + +T  E++ NA
Sbjct: 605 IILP-ETDLHGAITLCEKITDSLKNIDFSHEQARYTISCSIGITKFPLNNLTVDELVSNA 663

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE 733
           ++AMY AK +G N    F         +      K+ +  A+ ++   L Y PI+ +   
Sbjct: 664 DMAMYQAKSKGKNTWHLFTFDDMARTELKARVKWKQKIVDALNHNRFQLFYQPIMHIQSR 723

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +   EAL++             F+ +AE+  +I  I+ ++LE+    I           
Sbjct: 724 TVSHYEALLRMWDDNDQLHLPGLFIQVAEQTGLIHRIDHYVLEQGVAKIAE--QNLQHQD 781

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I + +N++   ++D EL   ++ LI++      ++    +E+  + +  ++R L+  L +
Sbjct: 782 ISLSLNLSGHAVVDPELQPLLEHLITQYGAQADKLIFELTETAAVADIPQARELMQELIR 841

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G   ++DDFGT  +   YL  +P   VK +GS +T     E     +++++ +AK +  
Sbjct: 842 LGCRFSIDDFGTGFASFRYLRELPVSLVKIDGSFITHITENEDDRLFVQALVTIAKGMGK 901

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             IA+ +     +  L  +G DY Q  ++  P   
Sbjct: 902 QTIAEFVENAETLALLETLGVDYAQGYYIGKPQPE 936


>gi|212639742|ref|YP_002316262.1| GGDEF and EAL domain-containing protein [Anoxybacillus flavithermus
           WK1]
 gi|212561222|gb|ACJ34277.1| Multidomain signal transduction protein (contains GGDEF and EAL
           domains) [Anoxybacillus flavithermus WK1]
          Length = 552

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 223/425 (52%), Gaps = 13/425 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ + +SFL  L   +     +      ++ +++D++K IND++G   G+++L  +
Sbjct: 132 DILTGVLSYESFLHLLRERM-----NKREPFALLSLNLDRFKFINDLIGYEYGNELLKQV 186

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+        I+AR + ++F +   +  +  +I D    + +  + P  L ++E+T+T
Sbjct: 187 AERLRR--YENGIVARQARDQFFLAFYTI-DRNEIRDMIRDVIQIFSTPFQLTDQELTIT 243

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCL 713
            SIG + +       + +L  A+LA+  AK  GGN    +     +++  ++ I+  +  
Sbjct: 244 PSIGVSVFPDDATDWTTLLSFADLALEIAKENGGNTYCFYTNELKKTNEEKLYIQHSIRK 303

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++ +E  L Y PI+ +   +IV +EAL++W HPK G IS + F+ IAEE  +I+ I  +
Sbjct: 304 ALKQNEFTLHYQPIVDIQTGDIVAVEALLRWFHPKRGWISPATFIPIAEETNLIQPIGDW 363

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L  +      W  +  +P + I +N++ K  L  +L + ++ ++      P  +KL  +
Sbjct: 364 VLRNVCEQSKKW-KEKGLPHVQIGVNVSIKQFLQADLVKHIEHVLRTYDLDPFCLKLEIT 422

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES+ M + +     L  L+ +G+ L +DDFGT  S L+YL  +P D +K + S +     
Sbjct: 423 ESMAMHHIDYVLAQLQSLKHLGLQLAVDDFGTGYSSLNYLKKLPVDIIKIDRSFVQDMVK 482

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               ++I+R++I +A +++  ++A+ +  E  +  L R GCD  Q  + + PL      +
Sbjct: 483 HSYDLSIVRAVIQVAHSLQMKVVAEGVETEEQLAILKREGCDRAQGYYFSKPLAAEQFEQ 542

Query: 952 LLKER 956
           L++++
Sbjct: 543 LVQQK 547


>gi|168233975|ref|ZP_02659033.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471369|ref|ZP_03077353.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457733|gb|EDX46572.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205332028|gb|EDZ18792.1| bacterial signalling protein N repeat [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 691

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 220/436 (50%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGTSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P     I + +++
Sbjct: 669 LGKPRTAEEIARDIRD 684


>gi|301046131|ref|ZP_07193306.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300301864|gb|EFJ58249.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
          Length = 661

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 120/569 (21%), Positives = 244/569 (42%), Gaps = 17/569 (2%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 LASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + + I ++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVKIFARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S L
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSRLGAQVHLDDFGTGYSSL 569

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L   P D +K +   +          +++R+I+ +A+ +   +IA+ +    +   LT
Sbjct: 570 SQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLT 629

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + G +  Q    A P+   +  +  K   
Sbjct: 630 KNGINERQGFLFAKPMPAVAFERWYKRYL 658


>gi|3659618|gb|AAC61686.1| c-di-GMP phosphodiesterase A [Gluconacetobacter xylinus]
          Length = 752

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 216/441 (48%), Gaps = 9/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ ++ + I   +  D+LTG+ NR S  + +  ++       + + ++ ++DID+++ IN
Sbjct: 306 EQSETRQHIAQLSNFDSLTGLLNRTSLHNIIERLI---MRGGDSQFSLFMVDIDRFRDIN 362

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  L+ + RRI  L+K   I++R  G+ F I++  E +  +   FA  +  +
Sbjct: 363 DALGHVNADRFLIEIGRRIRHLVKDEYIVSRSGGDEFIIVVP-ECSHERAEKFAENLINA 421

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVS 698
           IA P+ + E  ++++  +G +++ ++   S  +L +A+ A   AK  G           +
Sbjct: 422 IARPLQVGENTLSISCCVGISTFPANGPDSESLLSHADAATRQAKEDGRGLFRFAGQEKN 481

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +  M   + G+EAL +W HP  GNI  S F+
Sbjct: 482 QVAQDRLVLGSALRDSLSKGMLNLNYQPQVETMTGGLYGVEALSRWHHPTLGNIYPSRFI 541

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + LE     ++ W       P  + +N+++    +  L E +  L+
Sbjct: 542 AVAEETGQIEAIGRWSLEEACSQMVKWDRDGVRVP-TVAVNLSAVHFRNRGLPEHIANLL 600

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +P R+ +  +ESV+M +   +  +L  +R++ + L++DDFGT  S LS L  +P 
Sbjct: 601 KHHGLTPDRLTVEITESVMMDSSSETEEVLHAIRRLDVGLSMDDFGTGYSSLSRLTRLPL 660

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E   + L  + CD +Q
Sbjct: 661 TEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQWRLLEELHCDVMQ 720

Query: 937 DSHVASPLGFNSILKLLKERF 957
               + PL    + K  +ER 
Sbjct: 721 GYLFSKPLPPAELEKWFRERQ 741



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 10/168 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTIL 468
           A+  + D +   D     +        I G +   + G     +  +    +RD     +
Sbjct: 37  AMEQAIDPMVVIDEHNLIIFFNAAAEKIWGCSREEVMGRN---VSCLVPEPERDRHDDYI 93

Query: 469 DSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           +       GR+     E   R A+ ++    + I  +  ++   + YI +  D+TEQ + 
Sbjct: 94  NRNRETGVGRIVGTSREVEFRRANGEYVCGELSISRVQVNDCGKIYYIAVMKDVTEQSRQ 153

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD-DNLRPTVMVID 572
            + ++     D L  + +  S  +    +   + +        +M+ID
Sbjct: 154 RKILVLQ--NDVLQALASDMSIQEVGDLLCRRADSFVPGAVGALMLID 199


>gi|296117222|ref|ZP_06835815.1| cAMP phosphodiesterase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976317|gb|EFG83102.1| cAMP phosphodiesterase [Gluconacetobacter hansenii ATCC 23769]
          Length = 809

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 210/439 (47%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  + + I   +  D+LTG+ NR S    +  ++     + + R  + ++DID+++ IN
Sbjct: 327 EQNATRQHISQLSNFDSLTGLLNRSSLHKIIDALI---MREGDSRFYLFMVDIDRFRDIN 383

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV + +RI +L++   I++R  G+ + +I+     +  +  FA  +  +
Sbjct: 384 DALGHVYADQFLVEIGQRIRDLVQDDYIISRSGGDEYIVIVPDCTQAKAV-KFAELLIST 442

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ + E  ++++ S+G +S+  +   S  +L NA+ AM  AK  G            
Sbjct: 443 IAKPMQVGENTLSISCSVGISSFPDNGPDSESLLSNADSAMRQAKADGRGVYRFAGQEKN 502

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +      + G+EAL +W HP  GNI  S F+
Sbjct: 503 QVAQDRLVLGSALRDSLAKGMLNLHYQPQVEAASGGLYGVEALSRWHHPHLGNIFPSRFI 562

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R +  W D     P  + +N+++    +  L E +  L+
Sbjct: 563 AVAEETGQIEAIGRWSLHEACRQMRHWDDADVHVP-TVAVNLSAVHFRNRALPEYISNLL 621

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P R+ +  +ESV+M +   +  +L  +R +G  L++DDFGT  S LS L  +P 
Sbjct: 622 RQFNLKPDRLTVEITESVMMDSSSDTIDVLHAIRDMGCGLSMDDFGTGYSSLSRLTRLPL 681

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L  + CD +Q
Sbjct: 682 SEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRLLLEELKCDVMQ 741

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL  + + K  + 
Sbjct: 742 GYLFAKPLPAHELEKWYRA 760



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 6/173 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTIL 468
           A+  + D +   D     +   P    + GLA   + G   +  +P  +  D D+F T  
Sbjct: 58  AMEQAIDPIVIIDEHNSVIFFNPAAERMWGLARADVIGRNVSCLVPLDYRKDHDSFITHN 117

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 +      E     AD ++    + I  +     D   YI +  D TE+ +  + 
Sbjct: 118 RKTGLNKIVGTSREVEFTRADGEYVCGELSISKVQLPGTDKTYYIAVMKDATEESQRRKI 177

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD--DNLRPTVMVIDIDKYKKI 579
           ++     D L  +      +  +  +L         N    ++++D D   +I
Sbjct: 178 LILQ--NDVLQALA-ADLLIQDVADLLCRRVDSFVPNSVACLILVDSDNRLQI 227


>gi|297582987|ref|YP_003698767.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase [Bacillus
            selenitireducens MLS10]
 gi|297141444|gb|ADH98201.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Bacillus
            selenitireducens MLS10]
          Length = 1011

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/497 (23%), Positives = 233/497 (46%), Gaps = 11/497 (2%)

Query: 464  FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             R+ L + +  +   +           +  +              I + I  A +  E +
Sbjct: 518  IRSALMTVLRSKGAVIGIMVLECRPKGRKWYKEEMAFAQ-----SISQLISTALERHELR 572

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +    I   A+ D LTG+PNRQ F   L   +      + +   V+ +D+D +K +ND  
Sbjct: 573  QKELEIRHMAYFDGLTGLPNRQHFQTLLREQIAFVDEVE-MALAVLYVDLDLFKHVNDTW 631

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G + GD +L  +  R+   +    +++R  G+ F ++L    +  + +D    ++     
Sbjct: 632  GHSAGDKLLTMVGERMANGVDHRVVISRFGGDEFTMMLSPVQDRKEASDVVEVLQDLFRK 691

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            P +L   E+ ++ SIG + + ++  T+ +++KNA++AMY AK +G N    +    + + 
Sbjct: 692  PFDLEGNEVYISCSIGISIYPNNGSTTEDLIKNADMAMYEAKSKGRNAYAFYTEKLYSNM 751

Query: 704  --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              R+ ++ +L  A+E  +L L Y P   L   ++VG EAL++W H + G IS  EF+ +A
Sbjct: 752  LNRIEMEAELRRAIEQEDLTLYYQPQFDLDTGDLVGYEALVRWPHHRLGIISPGEFVPLA 811

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            EE  +I  +   ++   AR    W ++     + + +N++ K L+   +   ++  +   
Sbjct: 812  EETGLILPLGDQVIGIAARQQKQWHNEGYSI-VPVSVNVSVKQLMHENIIHTLRRALENH 870

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                  I +  +ES+   +    R  L R+R +GI++++DDFGT  S L YL   P D +
Sbjct: 871  ELPARSIGIEVTESISAEHFFTIRETLDRIRALGITVSIDDFGTGHSSLGYLKNFPVDFL 930

Query: 882  KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K + + ++G   + +  AI+R++I MAK +   I+A+ +     +  L +     +Q  +
Sbjct: 931  KIDRTFISGIGTSHEDEAIVRAVIAMAKGLRMQIVAEGVETAEHLDWLRQFSGLRVQGFY 990

Query: 940  VASPLGFNSILKLLKER 956
            +  P       K L ++
Sbjct: 991  MGRPGDAEVSGKWLSKK 1007


>gi|119774956|ref|YP_927696.1| putative diguanylate phosphodiesterase [Shewanella amazonensis
           SB2B]
 gi|119767456|gb|ABM00027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella amazonensis SB2B]
          Length = 725

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/618 (20%), Positives = 255/618 (41%), Gaps = 30/618 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               + + + I   ++  +     +G       L   + +   LA    ++  +   E+ 
Sbjct: 117 VHSALEVAIRINGHIEGVLSLERSIGARWSDSELHIASQVADQLALALATRHTYDKEEKL 176

Query: 408 SL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYI--HINDR 461
           SL   AV  S  +    ++  + V         I G+    + G     L +   H    
Sbjct: 177 SLFKSAVEQSEQVFMLINLHTETVEYVNKAHGDITGVPREKVIGRSLRQLDFFTQHP--- 233

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +L         +   E +++  D + +W+  +        G+    +    D +E
Sbjct: 234 RLAEEVLGRVFRGLSAK--GEVKLKRYDGRDYWLNYQASQFVTERGN-YYVLVTCEDNSE 290

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q    + +   A++ +LTG+ NR  F   L             +  ++++D+  +K+ ND
Sbjct: 291 QHNYQQELERLAWRCSLTGLYNRLHFNRVLDR---------TQQGQLLLVDLVGFKRFND 341

Query: 582 VLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
             G   GD +L+ + RR+     +     +AR+  + F I+L+ E  S ++   +  + +
Sbjct: 342 TYGHEQGDALLMEIARRLRHFSDINKATEIARVGSDEFAILLLGEKLSAEVEFISNRLYQ 401

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
            ++ P+ +   ++    ++      +S       L  A++A+ +AK + G  ++ F  + 
Sbjct: 402 HLSAPVQIGREQVDPKPALAIVDI-ASVSNLIAPLTCADIAVQYAKKKQGAAIQIFNNTL 460

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S   D   I+ DL  A+   +  L Y P+  L ++   G EALI+W HPK G +    F
Sbjct: 461 LSAFKDDAQIERDLHSAIRGRQFELYYQPLRDLQNDRYTGAEALIRWHHPKKGVLYPGAF 520

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I AI  ++LE   R +  W+       I + +N++++      L E +  L
Sbjct: 521 IDIAEQSGLITAIGSWVLEAACRQLNLWQHH--NLDISMHVNVSARQFFSGNLYEQVWQL 578

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +E+ +M +   +  L   L ++G+ L +DDFGT  S + YL   P
Sbjct: 579 LTRYRLKPKTLILEITETELMEDIRYATNLCQELAELGVGLAIDDFGTGYSSMRYLKQFP 638

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S ++    + +   I+ +II MAK +  ++ A+ +        L    C   
Sbjct: 639 ISKIKIDRSFISDLTISRESQEIVSAIIAMAKALNLSLTAEGVETPEQEAFLAANLCHQA 698

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    +  L      K +
Sbjct: 699 QGFLYSPALREAEFSKFI 716


>gi|290957203|ref|YP_003488385.1| membrane-associated phosphodiesterase [Streptomyces scabiei 87.22]
 gi|260646729|emb|CBG69826.1| putative membrane-associated phosphodiesterase [Streptomyces
           scabiei 87.22]
          Length = 787

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 217/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 346 LRDPLTGLPNRQWLLERTWTALDDAER-IGARSALMLIDLDRFRSVNDTLGHLAGDRLLL 404

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++   +  A  +  ++  P++L    + 
Sbjct: 405 QIADRLRAALPRGAEAARLGGDEFAVLLPVADSTTSASRVARNLVAALGSPLDLDGLTLV 464

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 465 LEASAGLAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 524

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 525 RALDAREVELHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 583

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 584 YVLETALGQVARWRAQGLHVP--VAVNVSPRDVHTPGFAGAVAARLARHGVPAGALQLEI 641

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 642 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 701

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 702 IDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPEEAT 761

Query: 951 KLLKER 956
             L+ R
Sbjct: 762 AWLRAR 767


>gi|170752207|ref|YP_001783352.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659334|gb|ACB28384.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 584

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 127/585 (21%), Positives = 246/585 (42%), Gaps = 40/585 (6%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +         S  +         A+      +  +D     V +      I G+    
Sbjct: 14  AALGEAFNRAIPSLAVTERDRLFEAALQNMIQGLCMFDAQSRLVVSNQRYRDIFGIPQDM 73

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS- 503
           +   +            +   +++   +      L+   R           +  I P+  
Sbjct: 74  ILTGMTQ---------HEICASLVARGLYAPGLTLEQIER------STRDALQSIEPVPI 118

Query: 504 ---NSNGDIL----------RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +NG  L           ++    DITEQ++S E I   A  D LT + N ++ + +
Sbjct: 119 TRELTNGRTLAINYRVIDGGGWVSTFEDITEQRRSAERIAYLAHHDALTDLANIRA-MRQ 177

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
               L  +  D+ L   +  ID+D++K +ND  G A GD++L  +  R+    +  D++A
Sbjct: 178 GYRDLVEARDDERLLLAMFYIDLDRFKFVNDTYGHAAGDELLQQVAARLRRNTRRGDVVA 237

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ F  ++   +        A  +   ++ P +L    +   ASIG A      +  
Sbjct: 238 RLGGDEFA-LVQRVSVEAAATTTAQRLVNVLSEPFDLACGRVHTGASIGLAIRAVEDLDM 296

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             +L +A+LA+ H+K  G   V  F   +S     R  I+ DL  A+   +  L Y  ++
Sbjct: 297 DPLLHDADLALRHSKTEGRGIVSVFEAGMSEAFEARRRIEADLQAALAAEQFELHYQTLV 356

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
              D  + G+EAL++W HP  G +    F+ +AEE  +I  +  ++L R  RD ++W + 
Sbjct: 357 DARDGHVAGVEALVRWRHPTRGLLPPLSFIPLAEESGLILPLGRWILARACRDALAWPET 416

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + + +N++S  L        + A++++T  + +R+++  +E+ ++   E +R  L
Sbjct: 417 -----VDVAVNVSSVQLRQKGFGAEVLAVLAETGLAAARLEIEITENSLLEESEATRDNL 471

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMA 906
             L   GI + +DDFGT  S LSYL   P D +K + S M+   ++    AI+R++  + 
Sbjct: 472 ATLHGAGIRIVMDDFGTGYSSLSYLRRFPIDKIKIDRSFMSEAETSADARAIIRAVASLG 531

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++  T + + +     ++     G   +Q   ++ P    S+ +
Sbjct: 532 VSLGITTVVEGVETAQQLELARAEGVGQVQGYLLSRPQPQASLSR 576


>gi|127512985|ref|YP_001094182.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella loihica PV-4]
 gi|126638280|gb|ABO23923.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
          Length = 729

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 129/619 (20%), Positives = 265/619 (42%), Gaps = 26/619 (4%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
             +  + + + I   L+  +   +L         +   + +   LA    +Q  +   ER
Sbjct: 120 AVVSHLDVAIRINGHLEGVLYLESLHPHEWPESEIHIVSQVADQLALTLATQRAYDTDER 179

Query: 407 QSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            SL   A+  S  I    ++  D++         I G+    + G     L +       
Sbjct: 180 LSLFLKAIEQSEQISMVVNLATDKIEYVNGAHHAISGVPKQQILGKSLACLDFF-KQSPV 238

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               +L      +  +     ++   D + +W+  R+RP +   G+    +  A D +E+
Sbjct: 239 QADAVLAQVKQGKITKGNT--QLTRRDGESYWLRYRVRPFTTPRGNHYALV-TAEDCSEE 295

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 +   A++ +LTG+ NR  F   L  +             +M+ID+  +K+ ND 
Sbjct: 296 LVQQNELERLAWRCSLTGLYNRSYFNRALEKL---------RSGHLMLIDLRGFKRFNDT 346

Query: 583 LGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            G   GD +L+ + RRI     +K  +++AR+  + F ++L    +   +      +   
Sbjct: 347 YGHEKGDSLLIEVARRIKHFASVKKAELMARVGSDEFALVLQGVEDEQSLDYAIKRLYHQ 406

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +++P+ +         ++      + +   S +   A++A+ +AK + G+ ++ F  +  
Sbjct: 407 LSLPVQVGAESFEAKPALSVVEIDALEAGFSAL-TCADIAVQYAKKKQGSAIQIFNHALL 465

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   +   I+ DL  A++N E  L Y P+  L  +  +G EALI+W HPK G +    F+
Sbjct: 466 NTFKEDAQIERDLQAALKNREFELYYQPLKDLGRQAYIGAEALIRWHHPKKGVLYPGAFI 525

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  MI AI  ++LE   R +  W+       I + +N++++     +L + +  L+
Sbjct: 526 DIAEQTGMIAAIGEWVLEAACRQLNLWQHH--NINISMHVNVSARQFFSTQLYDQVWQLV 583

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P+ + L  +E+ +M +   +  L   L ++G+ L +DDFGT  S + YL   P 
Sbjct: 584 TRYRIRPNTLILEITETELMEDVVYATHLCKELAELGVGLAIDDFGTGYSSMRYLKQFPI 643

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S ++    + +   I+ +II MAK +  ++ A+ +        L+ + C   Q
Sbjct: 644 SKLKIDRSFISDLSVSRESREIVSAIIAMAKALNLSLTAEGVETAEQESFLSALSCHQAQ 703

Query: 937 DSHVASPLGFNSILKLLKE 955
               +  L      + L+ 
Sbjct: 704 GFLYSPALREAEFSQFLRA 722


>gi|220908866|ref|YP_002484177.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Cyanothece sp. PCC 7425]
 gi|219865477|gb|ACL45816.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Cyanothece sp. PCC 7425]
          Length = 872

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 221/451 (49%), Gaps = 15/451 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS------ATDDNLRPTVMVIDID 574
           + + S + +  +A  D+LTG+ NR +F  RL                +     V+++D+D
Sbjct: 416 QLRVSFQQLEHHARHDSLTGLLNRDAFRVRLEEAFARHDWQLLHQPGEKSLLAVLLLDLD 475

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD----ILARLSGNRFGIILISENNSLKI 630
            +K +ND LG  +GD +L+ +T+R+   L   D     + R  G+ F I++ +  +    
Sbjct: 476 YFKLVNDSLGHILGDQLLIEVTQRLLHCLSNFDDANYAIGRFGGDEFVILIDNIQDVTTA 535

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  + K +     L   E  ++ SIG    T+    +   LKNA++A+Y AK  G  
Sbjct: 536 TRLAGQICKDLQRSFTLSGNEFFISTSIGIVLSTTGDRQADTFLKNADIALYRAKANGKA 595

Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             E F         DR+ ++ DL  A++  EL L Y PI  L  +++ G EAL++W HP 
Sbjct: 596 GYEVFDAQVHTGAKDRLRLETDLHRAIDRGELMLSYQPIFDLQRDQLAGFEALVRWQHPT 655

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLD 807
            G IS S F+ IAEE  +I  +  ++L++    + +W+ Q      + I +N + K    
Sbjct: 656 EGLISPSVFIPIAEESELIVKLGWWVLQQACTQMQTWQQQFPCSQDLVISVNFSGKQFFQ 715

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++ E +  ++ +T   P  +KL  +E+V+M   E ++  L RL   GI L++DDFGT  
Sbjct: 716 PDVLERIWQILDQTGLKPQHLKLEITETVLMSYGEVTKAKLKRLSDAGIHLSIDDFGTGY 775

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL   P  T+K + S ++      + + I+ +I+ +A  +   +IA+ +     ++
Sbjct: 776 SSLSYLHRFPVQTLKIDRSFVSEMGVQGEGLEIVEAIVTLAHKLRLDVIAEGVETREQLE 835

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +L   GCD +Q   ++ PL    +  L +  
Sbjct: 836 KLRHFGCDQVQGFLLSPPLLPERVSDLFRNH 866


>gi|238913532|ref|ZP_04657369.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 647

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 220/436 (50%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 208 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGTSFALLFMDLDGFKAVNDAY 266

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 267 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 325

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 326 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 385

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 386 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 445

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 446 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 504

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 505 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 564

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 565 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 624

Query: 940 VASPLGFNSILKLLKE 955
           +  P     I + +++
Sbjct: 625 LGKPRTAEEIARDIRD 640


>gi|205357301|ref|ZP_02346653.2| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322530|gb|EDZ10369.1| ggdef domain/eal domain protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 691

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 220/436 (50%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LT +PNR    DRL   +  +   +     ++ +D+D +K +ND  
Sbjct: 252 QANQELAQLALHDTLTRLPNRVLLEDRLEQAISKANR-EGSSFALLFMDLDGFKAVNDAY 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +LV++T R+ + L     LAR+ G+ F  +L   +   + A  A A+  SI  
Sbjct: 311 GHDIGDKLLVAVTHRLNQPLSGQFTLARIGGDEFV-LLAEVSAPDEAASLASALVHSIDA 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P  +   E+ VT S+G A +        E++ NA+ AMYH KH G N    F+  ++   
Sbjct: 370 PFTIDPYELVVTLSVGIALYPLDGKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLA 429

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ +  DL LA+E  EL LVY P  +     IVG EAL++W HPK G ++  +F+ +A
Sbjct: 430 QTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLA 489

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++++   R +  W  Q       + +N+++       L + +   +++ 
Sbjct: 490 EKTGLIVTIGSWVIDEACRQLREWHLQGYAL-WSVAVNLSALQFEQPGLVDTITRSLARH 548

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E+  M  PE+S  +L RL ++G+  ++DDFGT  S L YL  +P   +
Sbjct: 549 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 608

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +   +E      I+ +I+ +AK +   I+A+ +  E   + LT++GC  +Q   
Sbjct: 609 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 668

Query: 940 VASPLGFNSILKLLKE 955
           +  P     I + +++
Sbjct: 669 LGKPRTAEEIARDIRD 684


>gi|158338942|ref|YP_001520119.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158309183|gb|ABW30800.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Acaryochloris marina MBIC11017]
          Length = 783

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 17/449 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD---------DNLRPTVMVI 571
           E  ++ E +   A  D LTG+P+R  F++ L   L               D     V+ +
Sbjct: 325 EGHRTAEQLKHKALFDELTGLPSRDYFIEELQYKLHQLQQHRLAEYSVSYDPCHFAVLFL 384

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND LG +VGD +LV+L R++ E L+  D+LARL G+ F ++L   +N  +  
Sbjct: 385 DVDHFKLVNDSLGHSVGDQLLVALARQLSESLRSHDLLARLGGDEFAVLLDGVDNHQEAH 444

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           +    +++S+A P+ +  +E+  + SIG    ++S   + E+L++A+ AMY AK +G   
Sbjct: 445 EIVQRIQRSLAKPLQVDHQEVFTSVSIGMTHSSNSYEHTEELLRDADTAMYQAKDQGQGG 504

Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVE-----NSELYLVYHPIIRLMDEEIVGLEALIQW 744
              F   +      R+ +   L  AV+       +  L Y PI  L   +++G EAL++W
Sbjct: 505 YVVFDEVMHKQVRSRLWLGNSLRYAVKALEKGQCQFQLQYQPIFCLQQRKLIGFEALLRW 564

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS  +F+ IAEE  +I  +  ++LER  + +  W ++    P+ + IN++S+ 
Sbjct: 565 HHPQQGLISPEQFIPIAEETGLIVPLGQWVLERACQQLAIWFEEF-WAPVSMSINVSSQQ 623

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            L  +    +Q+L++        +KL  +ESV+M         L +L+K+G+ L+LDDFG
Sbjct: 624 FLQPDFVSSIQSLLNGHQLPGELLKLEITESVLMETTHHVTDRLEQLQKLGLLLSLDDFG 683

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           T  S L+YL  +P +T+K + S + G  + +  I+++II +A  +E  ++A+ I      
Sbjct: 684 TGYSSLNYLHNLPINTLKIDRSFVWGIGQGQDQIVKTIIALAHGLEMNVVAEGIETVEQA 743

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + L  +GC+  Q    A PL  +   K L
Sbjct: 744 QYLNLLGCELGQGFWFARPLEPDDAKKWL 772


>gi|29829289|ref|NP_823923.1| phosphodiesterase [Streptomyces avermitilis MA-4680]
 gi|29606396|dbj|BAC70458.1| putative phosphodiesterase [Streptomyces avermitilis MA-4680]
          Length = 778

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 218/426 (51%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 338 LRDPLTGLPNRQWLLERTWTALDDAER-IGARSALLLIDLDRFRAVNDTLGHLAGDRLLL 396

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +  ++  P++L    + 
Sbjct: 397 QIADRLRLALPRGAEAARLGGDEFAVLLPVADSTTSATRVARNLVAALGSPLDLDGLTLV 456

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 457 LEASAGLAVFPDHALDAEGLLQRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 516

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  ++ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 517 RALDAGDVELHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 575

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 576 YVLETALGQVARWRAQGLRVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 633

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 634 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 693

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  AI+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +  +   
Sbjct: 694 VDTQDAAIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPADEAT 753

Query: 951 KLLKER 956
             L+ R
Sbjct: 754 AWLRAR 759


>gi|189423126|ref|YP_001950303.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
 gi|189419385|gb|ACD93783.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
          Length = 664

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 211/433 (48%), Gaps = 6/433 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  + +   A  D LTG+PNR  F  R +  +  +     L    +  D+D +K IN
Sbjct: 224 ELQQVQQELSFQAQHDPLTGLPNRLLFDLRCSQAIATARQHKQLLAL-LFFDLDHFKNIN 282

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD VL  +  R+   LK  +++ARL G+ F +++       + A  A ++   
Sbjct: 283 DSYGHQVGDAVLRCVAARLTMALKDHNLIARLGGDEFCVLIEQLEQEQEAAAVAESVLHM 342

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P+   + E  ++ASIG   +         +L+NA+ AMY AK  G      +     
Sbjct: 343 LTVPLECEQHEFFLSASIGICLYPRDGDDEVRLLRNADTAMYRAKAAGRGGYRFYSHEQT 402

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            S +    +++ L  A+E  EL L Y P + L    +VG+EAL +W  P++G ++  +F+
Sbjct: 403 SSVQERTSLEQRLRKAIERGELRLNYQPQVCLTTGNLVGVEALARWSSPEFGLVAPEKFI 462

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE   I A+  ++L+   R +  WR   +  P  + +N+++  +  +++   ++  +
Sbjct: 463 PIAEESGQILAMGEWILDDACRQMQKWRRDGSTIP-RVAVNLSALQIQRSDIATLVRRTL 521

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    + ++L  +E  ++ + +R+  +L +LR +G+S+ +DDFGT  S LSYL  +P 
Sbjct: 522 DSTGLPANCLELEITEGYILQDADRAVAVLQQLRDLGVSIAIDDFGTGFSSLSYLHRLPI 581

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +        A  + ++++ + K +  +II + +        L   GC   Q
Sbjct: 582 DRLKIDKSFVQEIGSTSRAAQVAQAVVSLGKTLGLSIIGEGVEQLHHANALREWGCHEGQ 641

Query: 937 DSHVASPLGFNSI 949
               A  L  + +
Sbjct: 642 GFLYAPALAPDQL 654


>gi|78060224|ref|YP_366799.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
 gi|77964774|gb|ABB06155.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. 383]
          Length = 713

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 223/445 (50%), Gaps = 11/445 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +    D   + +SLE +   A  D LTG+PNR SF +RL   + L+      +  ++
Sbjct: 242 TGLVSYVIDSNVRAESLEHLRRLALSDMLTGLPNRASFNERLDLEIALAQAHGR-KLALI 300

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID++++K+IND+ G   GD+VL  L RR+  LL+  + +AR+ G+ F  +   ++++ +
Sbjct: 301 GIDLNRFKEINDLRGHHAGDEVLRILARRMTNLLREGEFVARIGGDEFAALCRMDDDT-R 359

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + +    +  ++  P+ L + E+   AS G A +     T + ++ NA+LAMY AK    
Sbjct: 360 LMNLLERLEPALYKPVRLDDYEVVPGASFGVAIYPDDATTKAVLINNADLAMYRAKGSIA 419

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             +  +  +       R  +  DL  AV +++L + Y     L   EI G EAL++W H 
Sbjct: 420 QSICFYEPAMDLIVRARRSLAADLRRAVADNQLSVHYQVQTSLATGEIRGYEALLRWQHA 479

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I  +EF+ +AEE  +I  I  ++L        +W      PP  + +N+++   + 
Sbjct: 480 TLGTIPPAEFIPLAEENGVILDIGAWVLREACARAATW-----EPPYAVAVNVSAVQFMH 534

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L   +  ++ +T    SR++L  +ES +    ER+   L +++ +G+S+ LDDFGT  
Sbjct: 535 ADLTALVADVLEETRLPASRLQLELTESTIFAGRERALDTLRQIKALGVSIALDDFGTGY 594

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L   PFD +K + S +  +    +  AI+R+++ + K++   I+A+ I     + 
Sbjct: 595 SSLDTLRSFPFDRIKLDQSFVADAEAKPQDRAIIRAVLALGKSLGIPILAEGIETRDQLA 654

Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL 950
            L   GCD  Q   +  P   N I+
Sbjct: 655 LLADEGCDEAQGFLLGRPAPLNEIV 679


>gi|269127765|ref|YP_003301135.1| diguanylate cyclase/phosphodiesterase [Thermomonospora curvata DSM
           43183]
 gi|268312723|gb|ACY99097.1| diguanylate cyclase/phosphodiesterase [Thermomonospora curvata DSM
           43183]
          Length = 687

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 210/438 (47%), Gaps = 11/438 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D LTG+PNR+    R    L  +  D   R  + ++D+D++K++ND LG A
Sbjct: 246 MRREHQTRHDGLTGLPNRKLLTLRTRQALAAAGADR--RLGLFLLDLDRFKEVNDTLGHA 303

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L  +  R+   ++  D++ARL G+ F ++L +  +     + A  +R ++  P+ 
Sbjct: 304 AGDRLLQIVAHRLTHSVRPGDLVARLGGDEFAVLLPTVRDERAAREVAARLRAALGEPVR 363

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRV 705
           L      + AS+G A           +L+ A++AMY AK    G  V S        DR+
Sbjct: 364 LEGLTFDLEASVGIALCPDHAADFESLLQRADVAMYVAKESRTGVEVYSPAKDRSSPDRL 423

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  DL  A++  EL L + P + L     VGLEAL++W HP+ G +    F+ +AE+  
Sbjct: 424 GMLGDLRRAIDRGELELHFQPKVCLGTGRPVGLEALLRWRHPELGLLEPGRFLPMAEQTY 483

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           ++ +I+  +L+       +WR +     I + +N++ +DLLD  L E ++  +++    P
Sbjct: 484 LMCSISRHVLKTALAQAAAWRREGLE--IQVAVNVSGRDLLDVGLAESVREELARHGLPP 541

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +E V+   P  +   L  L ++G+ L+LDDFGT  S L +L  +P + +K + 
Sbjct: 542 EALQLEITERVLANEPAYAAETLTALAELGVPLSLDDFGTGYSSLVHLKRLPVEEIKIDA 601

Query: 886 SLMTGSTE------KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           S ++              I+RSI+ +A+ +    +A+ +        L  +GCD  Q   
Sbjct: 602 SFVSRLAHTAGEAADDAVIVRSIVELARTLGLRSVAEGVEDAATAHLLRELGCDAAQGWF 661

Query: 940 VASPLGFNSILKLLKERF 957
              P+   +    L+   
Sbjct: 662 YGRPMDGAATTDWLRRHL 679


>gi|13472768|ref|NP_104335.1| hypothetical protein mlr3171 [Mesorhizobium loti MAFF303099]
 gi|14023515|dbj|BAB50121.1| mlr3171 [Mesorhizobium loti MAFF303099]
          Length = 832

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 124/606 (20%), Positives = 248/606 (40%), Gaps = 16/606 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    ++  A +    L+++L      + +     F   + ++ ER  + +   G  V  
Sbjct: 204 RFIRMLLTFANLVTAALLILLAVLRTRKLLAQRQAFQLALNAERERAQITLASIGQAVIS 263

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                           +L    G+  G    +    +  +       ++   +     R 
Sbjct: 264 TGRDGRLDYMNAVAEKLLACPFGATRGKPIASLFRLVDKDTGVEETQLVGRLLAGEARRS 323

Query: 480 QYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
               ++ +  D     + +   P+   +GD++  +   +D+T ++  +E +   A  D L
Sbjct: 324 SARPQLLQRPDGSVVPVALTGAPLL-VSGDVVGAVLAFHDMTREEDYIERLSWQASHDAL 382

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ +R+ F  RL   +            +M +D+D++K +ND  G A GD +L  ++  
Sbjct: 383 TGLADRRDFESRLERTIVELRGQPRQH-ALMYLDLDQFKLVNDTCGHAAGDQLLRQISAL 441

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           +   L+  D+LARL G+ FG++L+    + +  D A  +R ++         R +  + S
Sbjct: 442 LTCELRPGDVLARLGGDEFGVLLVDC-EADEACDIAERLRAAVQNLHFVWDGRPLNTSVS 500

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCL 713
           +G     ++++T  E L+ A++A Y AK +G N V+           R   +   + L  
Sbjct: 501 VGMVEIANAQVTIEETLRAADVACYMAKEKGRNRVQIHSDCDVDLRERFGEMAWVQRLHA 560

Query: 714 AVENSELYLVYHPIIRLMDEEI---VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           A+E +   L    I  L D+ +     +E L++        ++   F+  AE   ++ +I
Sbjct: 561 ALEQNRFRLHAQEIWPLNDDIVEAGAHIEILLRLTDEDGSFVTPQSFIPAAERYGLMPSI 620

Query: 771 NLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           + +++    R + + +      PI    IN++     D      +         SP+ I 
Sbjct: 621 DRWVVRNTFRILAARQADPRTSPITTCAINLSGATFGDESFLGFLSEQFLIHGISPAMIC 680

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+  + N   +   +  LR +G    LDDFG+  S   YL ++P D +K +GS + 
Sbjct: 681 LEITETSAIANLTSAMRFIADLRGLGCRFALDDFGSGMSSFGYLKHLPVDYLKIDGSFVK 740

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +     A++  I  + K +    IA+ +  +     L  +G DY Q   +A P  F+
Sbjct: 741 DMLDDRIDRAMVEMIHHIGKVMGKLTIAEFVESDGIAAALKTIGVDYAQGYGIARPTPFD 800

Query: 948 SILKLL 953
           +   LL
Sbjct: 801 ASTVLL 806


>gi|332304684|ref|YP_004432535.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172013|gb|AEE21267.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 719

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 132/597 (22%), Positives = 246/597 (41%), Gaps = 36/597 (6%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD-----------------IVWDWDI 423
           L     +          Q      +R    +  S D                  V     
Sbjct: 121 LQSARELLLSNDKIVAQQEYIH--QRLDEMLNQSSDLKNIQQPITEVIEKAEVGVAILTP 178

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               ++  P + ++      S   P+ +    + +   +      +  +     R   E 
Sbjct: 179 NLKPISQNPALYSVF----DSHLTPVESEPYRLILELFEKQYPEFERVIST-GSRWSGEL 233

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
                     W+ + I P+      I  ++ I NDI++ K  L+        D LT IPN
Sbjct: 234 FWLQPPGNGKWIKLAIYPVKTDFQQITHWVFIVNDISQVKHLLQNNEKLTHYDALTDIPN 293

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           RQ F  +L   +  +     +   V+ +DI  +K+IN++ G + GD ++  L  R+   +
Sbjct: 294 RQYFWMQLEQSVSNA-----MPFYVLYLDIKNFKRINEIHGHSRGDQIIKELAERLTPHV 348

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFAS 662
              D+ AR+ G  F II        +  D    +  +   P  L       +  +IG AS
Sbjct: 349 SPGDMFARIGGGEFAIIRQKTVTEQQCVDLGNTLIDAATQPFYLPNGTHCEIGLNIGAAS 408

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSEL 720
           +      +  ++K A+LA+++AK    + V+ +           + ++  L  A+ N E 
Sbjct: 409 FPRDAGDAETLMKFADLAVFNAKKASKSSVQFYSQALKDASQRIIELENALQTAITNHEF 468

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   P++ L    I+  EAL++W+      I   EF+ IAE+  +I  I  +++ R   
Sbjct: 469 ELFLQPMLDLTSGTILKAEALLRWNRLDGERIGPDEFIPIAEQTGLIVPIGKWVISRACE 528

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I +   + +     + +N++ + + D  L E ++  I  +   P +++L  +E V++ N
Sbjct: 529 MISTLNHRGH--SCKLSVNLSPRQISDRHLLEFIRGSIQNSHIQPDQLELELTEGVLVDN 586

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            ++ + LL  +RK+G+S+++DDFGT  S LSYL  +P D +K + S +      E   AI
Sbjct: 587 YDKVQYLLTEVRKLGVSVSIDDFGTGYSSLSYLKKLPIDHIKIDRSFVQDLVSDENDKAI 646

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +II MA +++  +IA+ +  E+    L    C+  Q    + PL F      L  
Sbjct: 647 ILAIIAMAHSLKLNVIAEGVETELQRNFLQLNHCNLAQGYLFSRPLPFAQFCDYLTA 703


>gi|300022590|ref|YP_003755201.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524411|gb|ADJ22880.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 753

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 132/592 (22%), Positives = 256/592 (43%), Gaps = 17/592 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+    TV   V       Q +     R    V  +   V  +D     V  T       
Sbjct: 167 VLQSLTTVGVDVSDKRRAQQALKEANSRLQAFVKHAPAAVAMFDSDMRYVAYTDRWLADY 226

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            L +  + G        +     ++++      +     R + E +   AD   + +   
Sbjct: 227 SLGTADLTGRCHYD---VFPEIPEHWKRKHQRILAGAMERCEEE-KFIRADGHENIIRWE 282

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +RP    +  I   + +  +++E+ K  + +   A  D LT +PNR SF + L   +  +
Sbjct: 283 VRPWYLPDQSIGGMMMMTEEVSERNKIRDELWRLANLDVLTSLPNRLSFNELLFNEIQFA 342

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               +    V ++DID+ K++ND LG  VGD +L  L  R+ + L     +ARL G+ F 
Sbjct: 343 QLT-SASFAVALLDIDRLKEVNDTLGHDVGDQMLKQLAARMKDALGGIGKIARLGGDEFA 401

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++  ++   +IA     + +++  P+ +       T S+G   +     T+ E+LK+A+
Sbjct: 402 VLIRGQD--KEIAAAFDVIHEALEKPLAIGGTRRICTISVGVTKFPQDATTAGELLKSAD 459

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+Y AK  G + V  F     R+ R    ++++    +E+ +  L + PII    +  V
Sbjct: 460 LALYRAKSDGRDRVVHFVPDMRRALRRRVELQQEARHGLESGQFILHFQPIIAADPKRPV 519

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EAL++W HP  G ++   F  + ++  +  ++  +++E   R   +W  Q       I
Sbjct: 520 SFEALLRWKHPVEGLLTPGLFEEVLDDPRLASSVGSYVIEMAIRQAATWMAQGKEFG-RI 578

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIG 855
            +N+ S D     L   +QA +++     S++ +  +E V +G         + R+  +G
Sbjct: 579 AVNVLSADFTIGCLATRLQATLARYHVPASKLCIEVTERVFLGGGVTNIADAMHRINALG 638

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + + LDDFGT  + L++L   P D +K + S +    E     +I+++I+ + +++   +
Sbjct: 639 VEVALDDFGTGYASLTHLKAFPIDRLKIDRSFVQDMHENHESLSIVKAIVQLGQSLGLRV 698

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL----LKERFPLVK 961
            A+ +        L  MGC   Q  + + P G   ++      L ER P  +
Sbjct: 699 TAEGVEKYEQFVLLQSMGCGSFQGYYFSPPRGAEDLVNFDAGDLSERRPAAR 750



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 93/344 (27%), Gaps = 50/344 (14%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI--QHV 390
                 ++ P    +  + +   + +    D  I   A    L    I I    +   + 
Sbjct: 4   WNIAKYVMSPRIWAVAGFGVAQGVLVYVLTDVSIWAAATAAVLSSFAITIAGAAVFTSNR 63

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                  +   +  E     +         W++    V         +G     +    R
Sbjct: 64  QLRVGHLEPHDASIEEFFYVLK--------WNVAGQLVDANERYLERIGYTLEELRKLPR 115

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           + +     +D +   + +   V   +     EF  +A D    WM   + P+ ++ G + 
Sbjct: 116 HQI-----DDENASLSEMWPLVRAGK-SWSGEFCDQAKDGSLVWMSAIVVPVRDAEGVLQ 169

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
               +  D+++++++ +  L  A                RL   +  +         V +
Sbjct: 170 SLTTVGVDVSDKRRA-QQALKEAN--------------SRLQAFVKHA------PAAVAM 208

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            D D  + +      A  D  L   +      L   D+  R   + F  I        + 
Sbjct: 209 FDSD-MRYV------AYTDRWLADYS------LGTADLTGRCHYDVFPEIPEHWKRKHQR 255

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
                  R      I     E  +   +         I    M+
Sbjct: 256 ILAGAMERCEEEKFIRADGHENIIRWEVRPWYLPDQSIGGMMMM 299


>gi|313500935|gb|ADR62301.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida BIRD-1]
          Length = 708

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/575 (21%), Positives = 246/575 (42%), Gaps = 16/575 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
              +          Q +  + E         +  + + +   D         P I+ +L 
Sbjct: 129 VQALLDQQRNRRMLQQLSRELETARAFNASILENAAEGILVVDAHGIISFANPAISRLLA 188

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                + G     L  + +     +R          R+    ++ ++R    +   + + 
Sbjct: 189 APVQHLQGT--QLLDVVQLTSTSLWRESDFYKAYQGRQIFRVHDAQLRTQGGELVPVALS 246

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             P+          +    D++  +   + +   A  D LTG+ NR+ F       L  +
Sbjct: 247 CAPLPADQ---QAMVVTVLDMSVVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGALLRN 303

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              D  +  +M +D+D +K+IND LG   GD VL  +  ++ + L    +LAR+ G+ F 
Sbjct: 304 ERSDKAQ-ALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGDEFT 362

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +  S     +   +A  + + +++   +   ++ +  SIG A++         +L++A+
Sbjct: 363 ALFDSLPYPEQAGRYAERLLERVSISHEVDGLDVCLGVSIGIATYPDCGANVEGLLRSAD 422

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G      +    +     R+M+++ +  A+E  +  LVY P +   D  + 
Sbjct: 423 AAMYAAKQAGRQQYRFYDQELNGRARSRLMLEDSVRTAIEQQDFTLVYQPQVAFHDGRLR 482

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G++    F+ + EE  +I  +  ++  + A    +W D+   P + +
Sbjct: 483 GFEALLRWQHPSVGDVPPGLFIPLLEEARLINRLASWIYRQGAAQRQAWYDRFP-PDLVL 541

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            I+++    +   L E +Q +I      P+++++  +E+ +M N + +   + RLR++G+
Sbjct: 542 GISLSRAQFVMPGLVEELQRVIQLYQLVPTQLEVEVAETSLMYNIDAAVKQIHRLRELGV 601

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + LDDFG     L  L  +P DT+K +  L+     +    A++RS+I +  +   T+I
Sbjct: 602 RVALDDFGAGDCSLRMLRDLPIDTLKLDRHLVARLPDSAVDAALVRSVIGLCADYRITVI 661

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           A+ +        L   GC+Y+Q   VA P+     
Sbjct: 662 AEGVETPAQAAWLKANGCEYVQGFLVAYPMTATDA 696


>gi|320161634|ref|YP_004174859.1| hypothetical protein ANT_22330 [Anaerolinea thermophila UNI-1]
 gi|319995488|dbj|BAJ64259.1| hypothetical protein ANT_22330 [Anaerolinea thermophila UNI-1]
          Length = 608

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 240/453 (52%), Gaps = 8/453 (1%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+R + +A+D+ E ++    ++ +   D+LTG+PNR  FL+R+    +      NL   V
Sbjct: 151 IVRMLSLAHDLGELRRDRARMVYHQEYDDLTGLPNRTLFLERIQRAFE---GHSNLLFAV 207

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +V+D+D Y+ +++  G A+ + +L +   +I   L+  D +ARL  ++FGI++    +  
Sbjct: 208 LVVDVDYYQLVHERFGRAIAERLLQAAVNKIRLNLRVEDTMARLGDDQFGILIEDVQDRS 267

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  + + +  P  +   E+ VTASIG A       T  EML+ A +A+  AK  G
Sbjct: 268 VVEMVATRILERVREPFVIEGNEVAVTASIGIALRNGHLRTPEEMLQEAGIALLEAKQSG 327

Query: 689 GNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 F  S        ++   DL  ++E + L L Y PI  L   +++G EAL++W H
Sbjct: 328 RGKWLVFDESMRDELIRRMEVENDLRRSLEENRLVLHYQPITELKSGKLIGFEALVRWIH 387

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDL 805
           P+ G I  +EF+ I+E+  +I  + L++L +    +  W+++    PP+ I +NI+ + L
Sbjct: 388 PRRGMIWPTEFIEISEKTGLIVPLGLWVLRQACWQMRLWQERFPVTPPLMISVNISPRQL 447

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +  E ++ ++ +T   PS ++L  +E  V+         L  LR +G+ L +DDFGT
Sbjct: 448 EEADFSEQVKKILEETGLPPSSLRLEITEHTVVQRSGALIEALDSLRMLGVQLYIDDFGT 507

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL  +P D +K + S ++   + + +  ++++II +A  +   ++A+ +     
Sbjct: 508 GYSSLGYLDRLPVDAIKIDRSFVSNLGKAKSSQGVVQAIIQLAHELNIEVVAEGVETFEQ 567

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +EL R+ C+++Q  +++ PL  +++ + +  R
Sbjct: 568 HRELKRLQCEFMQGFYISEPLDVHAVERFIAGR 600


>gi|89099761|ref|ZP_01172634.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911]
 gi|89085508|gb|EAR64636.1| hypothetical protein B14911_21668 [Bacillus sp. NRRL B-14911]
          Length = 677

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/435 (29%), Positives = 230/435 (52%), Gaps = 11/435 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +S + +   A+ D LTG+PNR+  +  +   +      ++++  V+ ID+D +K +N
Sbjct: 236 ELVESNKHLNHLAYHDTLTGLPNRRKVMQSIEEWMA-----EDIQFAVVFIDLDHFKHVN 290

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+LG  +GDD+L  +  R+ E     DI+ RL G+ F IIL     +L++ DF+  + + 
Sbjct: 291 DLLGHNIGDDLLKKIASRLKENSGSEDIVGRLGGDEF-IILKPVKENLQLDDFSADLIEK 349

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P+ +LE EI +T SIG A + +     ++++K A++AMY++K +G N    F +   
Sbjct: 350 VVEPVQILEHEIVITTSIGIALYPTHGKDVNDIMKKADIAMYNSKDKGRNTYFIFTLELD 409

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++ +KEDL  A+   EL + + P IR+ D+ + G EAL++W HP  G I  +EF+
Sbjct: 410 ESIIRKMTLKEDLKHALVRDELEVHFQPKIRVSDQSVNGFEALLRWKHPSIGFIPPAEFI 469

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE   I  I  ++L +  R+I +  ++     I I +N + K LL  ++ E +  ++
Sbjct: 470 PIAEESGSISEIGSWVLRQACREISAINEKYGRQYI-ISVNFSIKQLLQKDIVETVSGIL 528

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T   P  ++L  +E V M +   +     +L  +G+ L++DDFGT  + LS L  +  
Sbjct: 529 NETGLDPKFLELEITERVAMNDAYSAGDAFMQLLDLGLMLSVDDFGTGYNSLSNLQELQI 588

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +      E   A++ SI+ M K++   I A+ +     +  L  +GCD  Q
Sbjct: 589 QRLKIDKTFIQQMESDEHNKALVASIVSMGKHLGMQITAEGVETPEQLSFLMEIGCDEAQ 648

Query: 937 DSHVASPLGFNSILK 951
             + + P     I+ 
Sbjct: 649 GFYFSRPKPIEQIMN 663


>gi|325920559|ref|ZP_08182481.1| diguanylate cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
 gi|325548952|gb|EGD19884.1| diguanylate cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
          Length = 520

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 110/448 (24%), Positives = 219/448 (48%), Gaps = 12/448 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   ++  A  D LT +PNR    + +   +D +  D   R  VM+I++D +K +ND  
Sbjct: 73  QANAELVLAALHDPLTRLPNRVLLHEHVLQSIDRAQHDGQ-RFAVMLINLDGFKAVNDGY 131

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV++  R+    +    LARL  + F  ++    +    A  A  + +++A+
Sbjct: 132 GHQFGDQLLVAVAGRMSAHRRANGSLARLGADEFA-LVSDIADPEDAAAIAAHLLQALAV 190

Query: 644 PINLLEREITVTASIGFASWT-----SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           P  + ++E+ +++S+G A +          +  +++ +A+ AM HAK  G N    F  S
Sbjct: 191 PFLVGDQELRLSSSVGIALYPEDAGPDDAGSEHQLMTHADAAMRHAKQAGRNRYSFFERS 250

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R+ + +DL  A+E  +  L Y P     D   +G EALI+W HP+ G +    
Sbjct: 251 MTGTTRERLQLLQDLPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDS 310

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  +  ++L++  R + +WR+  +     + +N+++  L    L + +  
Sbjct: 311 FIPLAERSGMIGPLGSWVLQQACRQMRAWREAGHG-DWRVAVNLSATQLASPSLLDEVAT 369

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++ L  P ++ L  +E++ M + +     LG+L  +G+ + +DDFGT  S L YL  +
Sbjct: 370 TLAEHLIPPGQLTLEITETMAMRDADACLRTLGQLNALGVRIVIDDFGTGYSNLLYLRKL 429

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +       + IAI+ +++ +A  +   ++A+ +        L R+GCD 
Sbjct: 430 PAHELKIDRSFVQAMDTCPEDIAIVAAVVALAHTMRLQVVAEGVETTAQRNTLERLGCDQ 489

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
           +Q   +  P+     +  +  +   V+ 
Sbjct: 490 LQGYLLGGPMDAERFIATVVAQRDGVRR 517


>gi|309776249|ref|ZP_07671240.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916200|gb|EFP61949.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 739

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 228/560 (40%), Gaps = 26/560 (4%)

Query: 403 DGERQSLAVLGS-GDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           D E    A++ S  D ++  ++  D      +P +     L S  +H     W   IH  
Sbjct: 197 DKELLLSALMQSTDDYIYVCNMKEDPSCFRYSPAMVEEFDLPSEIIHDAANVWGARIHEA 256

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+  F          R  R   E+R +  + ++ W+  R     + +G    + GI  ++
Sbjct: 257 DQTVFLEGNQEIADGRVDRHNVEYRAKNRNGEWVWLRCRGYVERDEDGKPALFAGIITNL 316

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
             +K  +         D LTG  N+    D L  ++            ++++D+D++  I
Sbjct: 317 G-RKNKI---------DYLTGQFNKYELEDTLQMMIAKQEQ-----FFMIMLDLDEFSSI 361

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N +     GD+VL    + I  +L     L R  G+ F +++ +  +  +I  F   +++
Sbjct: 362 NKLYNHQFGDEVLAKTAQLIQSVLPENARLYRNDGDEFIVLIRNSTDKEEIMTFYQHLQQ 421

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            ++    L  ++   + S G A++         + KN   A+  +K  G N +  +    
Sbjct: 422 ELSHQRVLDGKKYHCSVSAGCAAFPRDANDMMTLTKNVGYALEISKRNGKNRLTLYEKEM 481

Query: 700 FRS--DRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +    + + E L  ++E+      L Y P +      I+G EAL +W    +GN+   
Sbjct: 482 SETELQELDMIEQLRYSIEHDFEGFQLHYQPQVEANSGRIIGAEALARWSSSMYGNVPPM 541

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E+  MI     ++ E   +    W  +   P   + +N++   L D      M+
Sbjct: 542 TFIPLLEKSGMIVPAGKWIFETAVQQCALWLKK--HPDFCVSVNLSYLQLCDEGFPSFMK 599

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++         I +  +ES ++ + E  RL+   +R+IGI + +DDFGT  S L  L  
Sbjct: 600 HVLHHYQVPSGNIVVEMTESYMVKSGEELRLIFHEIREIGIRIAMDDFGTGYSSLGVLKN 659

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D VK +   M     +E     +R ++ +  ++   ++ + +  + +  ++  MG D
Sbjct: 660 SPADIVKIDRIFMKDILTSEFDATFIRFVVRLCHDVNIRVLLEGVETQEEYDKVKTMGLD 719

Query: 934 YIQDSHVASPLGFNSILKLL 953
           YIQ      P+   +    L
Sbjct: 720 YIQGYFFGRPMTLEAFESSL 739



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 8/189 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D+LTG+ N++     L   +  +   +    T  ++DI+    IN   G   GD VL  
Sbjct: 21  RDHLTGLWNKEEGERLLAACICENRKKETAFLT-ALLDINDLSIINKACGHQEGDRVLQK 79

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             ++I   L   D   RL G+ F I+  S +           +R+             T+
Sbjct: 80  TAKKICAYLNAEDFAIRLGGDEFLIVYQSLSKKEASQQLFQILRELEQESKAF---SYTI 136

Query: 655 TASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
               G          +  +++  A+  MY +K R           S          ++  
Sbjct: 137 GFCFGLIQIDPDTELSLKKIIMQADDEMYLSKRRYHMEKSRAAFFSRPYHESQ---EVRQ 193

Query: 714 AVENSELYL 722
              + EL L
Sbjct: 194 FTYDKELLL 202


>gi|317131072|ref|YP_004090386.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ethanoligenens
            harbinense YUAN-3]
 gi|315469051|gb|ADU25655.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ethanoligenens
            harbinense YUAN-3]
          Length = 1024

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/803 (19%), Positives = 322/803 (40%), Gaps = 76/803 (9%)

Query: 207  TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
             I    +RS M +    +         +   F  +   + S        CS   +   LI
Sbjct: 241  VILSQASRSHMYLCVSLVLIGEGFLTILGRNFYYRQAPVVSVA-----MCSANLILLGLI 295

Query: 267  IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
            + +   L  N    ++           A      ++    T +     +   +L+     
Sbjct: 296  LAVVNRLRLNESLKEMLMSVIFSFGIPATALWFVYFQCYATWAYIFPVMIISMLFN---- 351

Query: 327  IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
                 +     V++      + +W     +++     + +++  ++G  V++V  +    
Sbjct: 352  ----RRILLGTVMVESILTQLLLWVAFPQLSMWVEGPDYVVRLTVMGLSVILVFYVSHVY 407

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIV----------RDRVTTTPDI 434
            I  +    Y +Q        Q+L    S + +   ++++              +      
Sbjct: 408  ISRLYKNIYDTQA-------QALMAELSQEFISAEEYNLDQKLYAALQRCGRFIQCDRAF 460

Query: 435  ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD----SFVGYRRGRLQYEF------- 483
              ++   + +       W+   H +    F  I        +    G +  E        
Sbjct: 461  LVLVDARTRTFRHS-CEWMEEGHPSLIHGFEAIWKDIPKEVLRTLEGGMHVEMADVPRLP 519

Query: 484  ----RVRAADNQF-------HWMIIRIRPM---SNSNGDILR------------YIGIAN 517
                R+R     +         +    RP+   + S G  LR               + +
Sbjct: 520  QTAARLRTTLLSWGVRSYAVLPIQRNKRPIGALAFSAGRPLRRWNLRSGAFLEIIAAVLS 579

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            D   + +  +     A+ D LT +PNR  F  +L   + L+     +   ++ +D+D +K
Sbjct: 580  DAIVKVEREKEAGFLAYHDQLTRLPNRTLFKKKLDRAIRLAGQVGEM-VGIVFLDLDSFK 638

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             +ND +G  +GD +L  + R+I   ++  D ++R  G+ F ++L   ++   +   A  +
Sbjct: 639  AVNDTMGHDLGDRLLSKVARQIQNAVREVDTVSRFGGDEFVLLLDHISDVQDVLQMAENI 698

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV--ESF 695
               I  P+ + ++E+ VTAS+G A +         +++NA+ AMYHAK  G N     S 
Sbjct: 699  LNDIQQPVAVNQQELFVTASMGIALFPQDGREPEALIQNADDAMYHAKSMGKNRCVLCSQ 758

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +      ++ +   L  A E  +L L Y P   +  + IVG+EAL++W  P+ G +  +
Sbjct: 759  MIKDHVLKKMELTNLLYHAQEKGQLELYYQPQFDMAAQAIVGVEALLRWRLPEKGMVEPA 818

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            +F+ +AE+  MI +I  ++LE   +    W+D    P + +++N+++  L   +L + + 
Sbjct: 819  QFIPLAEQSGMIYSIGEWVLETACQQNKVWQDSGL-PRMRVMVNLSANQLTSPKLVQCVV 877

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++ KT   P  ++L  +E+    N       L RL+ +G+SL +DDFG+  SLLS L  
Sbjct: 878  RVLKKTRLPPEYLELEITETAASTNLPLVLDTLRRLKAMGVSLAIDDFGSAQSLLSRLKM 937

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K +   + G   ++K   +L++++ + +++   ++A+ +        L  + CD
Sbjct: 938  LPVDRIKIDAQFVQGIEKSDKDQTVLKAMVRLIRSLGLRVVAEGVETPRQFDFLAGVMCD 997

Query: 934  YIQDSHVASPLGFNSILKLLKER 956
             +Q      P+   +I  +L E 
Sbjct: 998  EVQVFFCCRPMEAAAIQAVLSEY 1020


>gi|269103739|ref|ZP_06156436.1| sensory box/GGDEF family protein [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268163637|gb|EEZ42133.1| sensory box/GGDEF family protein [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1051

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 109/582 (18%), Positives = 223/582 (38%), Gaps = 20/582 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +     Q +        L       I+   D      +     A +LG    
Sbjct: 476  LFEARDMTSRRQMEQKLREREVSYHLLYEQQPVILLTIDNSARIQSVNQFAADLLGYHKR 535

Query: 444  SMHGP--IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             + G      +L  I          I+       R   + + + R AD +  W+   +R 
Sbjct: 536  DLLGHKITEFYLEGILPP-----HQIISHSGVESREVWRRQVQYRRADGETVWVRETVRQ 590

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
                +    + + +  DIT  ++  + +   A  D LTG+ NR  F  +L   LD     
Sbjct: 591  AQAKH----QLLIVGEDITSTRELEQRLAYQANHDYLTGLYNRSYFESQLELALDEVQQ- 645

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +++  ++ ID+D++K IND  G   GD+ L  +   +  L     ILARL G+ F +IL
Sbjct: 646  QDVQHAMLYIDLDQFKVINDTAGHEAGDEALKQVALGLQNLATENTILARLGGDEFAVIL 705

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +    +A     +                 + S+G      +  +  ++   A+ A 
Sbjct: 706  RHCDEEQALALGRKILHLLDDAEFLWQNTRFNFSCSLGIRLIDKTAGSPQQVHAQADTAC 765

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRL-MDEEIV 736
            Y AK  G N +  +R       R   +      +  A+      L    I  +    +  
Sbjct: 766  YVAKDEGRNRLHLYRPDDEELKRREHEMHYVNRIRRALVECRFELYAQQIAPIGRSSKNH 825

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              E L++         S   F+  AE   +   ++ ++++++        +         
Sbjct: 826  HYEILLRMRELDGSIASPGVFIPAAERYNLAHLLDRYVIQQVLSWYQQHPEAIEKLG-HC 884

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             IN++ + + + E  + +   I  +    ++I L  +E+  +GN  ++  L  +L+++G 
Sbjct: 885  SINLSGQSIGNQEFVKFLLHQIRHSTVPANKICLEITETAAIGNMTQAISLFTQLKELGC 944

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
             ++LDDFG+  S   YL  +P D +K +G  +    +  +  A++++I  +AK +    +
Sbjct: 945  LISLDDFGSGLSSFGYLKRMPVDVLKIDGMFVRDIDKDDMDFAMVKAINELAKKMGKQTV 1004

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            A+ +  +  + +L  +G DY Q  +   P     ++  L + 
Sbjct: 1005 AEFVENKAILDKLESLGVDYAQGYYFGQPKPLAELVDDLSQE 1046


>gi|332187591|ref|ZP_08389327.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012339|gb|EGI54408.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 667

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 228/467 (48%), Gaps = 26/467 (5%)

Query: 509 ILRYIGIANDITEQK---------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           IL ++   +DIT+Q                   E     A +D+LTG+ NR +F +    
Sbjct: 192 ILFFVLAMSDITQQTYAAILRATIASDEKAALAEHHARMARRDDLTGVANRTAFREHFEE 251

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L L A  +  +  ++ +D+D++K++ND  G   G+ +LVS+ RR+  +L    I+ARL 
Sbjct: 252 RLRLRAASEK-KLALLWLDLDRFKEVNDSFGHLAGNALLVSVARRLEAVLGDHGIVARLG 310

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F +I     ++        A+  S+   +     E+  TASIG A    +   +  +
Sbjct: 311 GDEFAVICC-IADAQAAGRIGTAILDSVRQSVRFNGHELRTTASIGIAIAPDNGSDADTL 369

Query: 674 LKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           LKNA+LA+Y AK +G      +   +      R  +   L  A+E  E  L Y PI  L 
Sbjct: 370 LKNADLALYRAKEKGRGRFFFYEPLMDEKIERRRQLAIALDGALERGEFDLAYQPIFDLA 429

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              I   E L++W+ P++G +S +EF+ I E+  +I ++  ++L +  R   +W  +   
Sbjct: 430 KGRITSCETLLRWNSPQFGAVSPAEFIPIVEDNALIVSVGDWVLRQACRTASTWPAE--- 486

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + I +N++   L   +L   + A ++ +   P R+ L  +ESV++ + ERS   L  L
Sbjct: 487 --VTIAVNLSPVQLRAPDLPRAVMAALAASGLPPERLTLEVTESVLLDDVERSLAALNAL 544

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
            +I +  TLDDFGT  S LSYL   PF T+K + S +         +AI+++I+ +A  +
Sbjct: 545 NRIHVCTTLDDFGTGYSSLSYLTQFPFQTLKIDRSFVIDLEHNPASVAIVQTIVDLAAKL 604

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               +A+ +     +++L R  CD +Q   +A P+    ++ L  ++
Sbjct: 605 GMRTVAEGVETPAQLEQLRRTRCDAVQGFLLARPMPAEQVVALFADQ 651


>gi|260771806|ref|ZP_05880724.1| hypothetical protein VIB_000244 [Vibrio metschnikovii CIP 69.14]
 gi|260613098|gb|EEX38299.1| hypothetical protein VIB_000244 [Vibrio metschnikovii CIP 69.14]
          Length = 680

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 117/425 (27%), Positives = 210/425 (49%), Gaps = 10/425 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+L+G+  R  F+ RL  +++      +    ++ +DID +K IND LG  +GD+V+  +
Sbjct: 258 DSLSGVYTRTGFIKRLDHLIE-----QHTPLIMLYLDIDNFKNINDSLGHHIGDNVIKEV 312

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  LL    IL  L G+ F +IL    +       A  +   I  P +L      + 
Sbjct: 313 AIRLKRLLPAQAILGHLGGDEFALILPYPEHRHSGEMLAERIINLINQPFDLHHFSKRLA 372

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCL 713
            SIG   +      +  +L+NA+ AMY AK RG N +  F  +++     R+ ++ +L  
Sbjct: 373 CSIGSVLYPGDGHNARVLLQNADTAMYEAKERGRNRLVQFDNQMNKEARMRLWLEIELQK 432

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++ + L + Y P +   D  I G EAL++W HP  G IS   F+ +AE+  +I+ +   
Sbjct: 433 ALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPIEGYISPGAFIPVAEKAGLIEHLGRV 492

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++  +   +  W  Q    P  + INI+ +   + +L + +  L+ +T  +P  I    +
Sbjct: 493 VIREVFTTVKRWEQQNL-LPGNVAINISPEQFANPQLIDYLTKLLRQTQLNPRYITFELT 551

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           ES +M   E +  +L  ++K+G SL++DDFGT  S L+YL   P D +K + S ++    
Sbjct: 552 ESAIMSGSEHTLQMLSAIKKLGFSLSIDDFGTGYSSLAYLARFPIDELKIDRSFISDMDN 611

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             K+I ++ SII + +++  T++A+ +  +     L+ + C  IQ  H   P     +  
Sbjct: 612 LPKQITVIESIIKLGQSLNLTVVAEGVETQQQAILLSNLHCHTIQGFHFYRPQPKEEVEV 671

Query: 952 LLKER 956
           L  + 
Sbjct: 672 LFSQH 676


>gi|326794123|ref|YP_004311943.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326544887|gb|ADZ90107.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 801

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 208/450 (46%), Gaps = 9/450 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +       A  D LT + NR+ F  +L  +  ++ ++ N    +  +D+D +K++N
Sbjct: 352 ESLAARAEATKQANLDPLTNLANRRFFQKKLQHLCQMAKSN-NTPFGLFYLDLDHFKEVN 410

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD+VL     R+   L     LAR+ G+ F I++    +   + D A  + K+
Sbjct: 411 DIHGHREGDNVLKDAGERLQRTLPSNCELARIGGDEFTILIPGIVDEAALGDIANNVLKA 470

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  +   +++++ASIG  +        S +L+ A+ AMY AK+ G      F     
Sbjct: 471 FESPFRIGVEQVSISASIGITACPKDAQDESTLLQFADEAMYAAKNSGRRQYHIFSQELH 530

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R  I  D+  A+   E+YL Y PI+ L  +EIV  EALI+W+HP  G I  S F+
Sbjct: 531 AMVLERQHILSDMRHAIPRGEMYLKYQPILDLNAQEIVKFEALIRWNHPTKGAIPPSMFI 590

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQAL 817
            +AEE  +I  I  F+       +  WR     P + + IN +    +   +  E     
Sbjct: 591 PLAEESGLIGVIGDFVFSESILQLAKWRK-TLSPNLVMSINTSPFQYMESGKNLERWFHQ 649

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       I    +E+++M +       L  LR  GI++ LDDFGT  S L+YL    
Sbjct: 650 LDQLDLPGDAIIFEITENMLMHHSSNVSDQLLALRDKGINVALDDFGTGYSSLAYLNRFD 709

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +       +A  +  +I+ MA  +   ++A+ I  E  +  L + GCD  
Sbjct: 710 IDFIKIDQSFIRDMESGAMAQDLCEAIVSMAHKLNLHVVAEGIETEHQMNLLIKYGCDLG 769

Query: 936 QDSHVASPLGFNSILKLLKE--RFPLVKNT 963
           Q  + + PL  ++   LL+E    P  +NT
Sbjct: 770 QGYYFSYPLEADAATTLLEEGINLPNTENT 799


>gi|289676849|ref|ZP_06497739.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 719

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 149/699 (21%), Positives = 303/699 (43%), Gaps = 26/699 (3%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
           +        G    +  A + I   +     + +  + +   A  +    + + +  M  
Sbjct: 25  NLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG--GLVLIVILIGFTVIQHVL 391
           ++  + +     +  I  + + +     +    I    +    +  +V+ IG +V+ ++ 
Sbjct: 85  FQAPLKIAYDLSITLISLLIVLITALVAMRALTIPELTLKRCLISAVVMGIGISVMHYLG 144

Query: 392 ATGYFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +   S        R  +L  ++     +    + R     +     +   A   + G  
Sbjct: 145 MSAMRSTATQYYEPRMFALSILVAVLSSIALLTLSRHLRQYSGMFHQMFRYAVSLLLG-- 202

Query: 450 RNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------ 501
              L  +H+      R ++     +         +  +  A      +   I        
Sbjct: 203 -AGLLTMHLMGMKALRLVIPEGVALHGPTTENSQQLGLTIAAIALLIIAGSISAAMADKK 261

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L     +
Sbjct: 262 LQGKEHDLQRVNVLLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQEHTFN 318

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +   VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL
Sbjct: 319 KGM-LAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRAQDVVARFGGDEF-CIL 376

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  +   +   I L  R + +T SIG A +     T  E+LK+A+LA+
Sbjct: 377 LSIPDYEEARHLAHRVMHKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLAL 436

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGL 738
           Y +K +G N V  F     +  S  + ++E+L  A+     L + Y PI+ +    +  L
Sbjct: 437 YQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGKGLQVYYQPIVDMRTGHVAKL 496

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G +  + F+ IAE   +I  ++ ++L R   D+ +   +     + I +
Sbjct: 497 EALVRWNHPHHGLLVPARFISIAETNGLIAELDNWVLRRACHDLRTLGQEGLEQ-LIISV 555

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N ++  L  NEL E ++  ++    +P +++L  +E+ +MGN   +  +L  +R +G+SL
Sbjct: 556 NCSALTLGRNELVEEVERALADADAAPGQLELEVTENALMGNISNTIQMLKHIRSLGVSL 615

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ +
Sbjct: 616 SIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVTE 675

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  +  ++ L + G DY+Q    + P     IL L ++
Sbjct: 676 GVETQDQLEFLRQFGSDYVQGYLFSRPQPLERILPLARQ 714


>gi|77163866|ref|YP_342391.1| PAS sensor diguanylate cyclase/phosphodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435141|ref|ZP_05048648.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76882180|gb|ABA56861.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207088252|gb|EDZ65524.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 979

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 109/547 (19%), Positives = 228/547 (41%), Gaps = 22/547 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDRDNFRTI 467
           +  +  I+   D              I G  +  + G     L     +           
Sbjct: 425 LNTAQVIILTQDSAGRVTMLNRQGQKITGYGADQITGRPFYELLAGDKVSPE----LFQQ 480

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFH---WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           L+     RRG+++ +  ++  +       W   R+    +S+   +  + + +D+TE+++
Sbjct: 481 LEELRTGRRGQVRVDTGLQCQNGSQRTISWFHSRLAVHPSSD---VVVLSVGHDVTEREQ 537

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A  D LT + NR+ F      IL  S      +  ++  D+D++K IND  G
Sbjct: 538 AEQRLAWLADHDPLTELFNRRRFQHEFEQILGASIRY-GTQGGLLYFDLDQFKYINDTSG 596

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L  +  ++ ++++  DI+ARL G+ F +++   +    +        +   + 
Sbjct: 597 HQAGDALLRMVADKLRQVVRGSDIVARLGGDEFAVVIRECDVESAVRVARKVCTQLSTLE 656

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                   +++ SIG A +     T  +++ NA++AMY AK  G      F       +R
Sbjct: 657 FPARGGNHSISLSIGIALFPLHGATVRDLMANADVAMYQAKEEGRGRWHLFSSDEQVRER 716

Query: 705 VM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +      KE +  A+      L + P++ +    I   E L++    +   IS ++F+ +
Sbjct: 717 MQQRVYWKEQIEQALREDRFLLYFQPVLDIRTHTIGHYEVLLRMYDHRGRIISPAQFIPV 776

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I AI+  +L +          Q     + + IN++ + + D EL   ++ L+  
Sbjct: 777 AEQSGLIHAIDHLVLRKAIAQQAKLWSQGYH--LTLSINLSGRVVDDPELVPILEDLLRT 834

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +PS +    +E+  + +   +   + R++  G    +DDFG   S   YL  +P D 
Sbjct: 835 TGVNPSSLMFEVTETAAVADLAAAEGFMHRIKAHGCRFAVDDFGVGFSSFFYLKRLPVDY 894

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +G  +     + +    ++++  +AK +    +A+ +     +  L   G DY Q  
Sbjct: 895 VKIDGMFVRELAKSHQDQVFVKALSEVAKGLGKKAVAEFVEDAEALALLHEYGVDYAQGH 954

Query: 939 HVASPLG 945
           ++  P  
Sbjct: 955 YIGRPTP 961


>gi|310659369|ref|YP_003937090.1| diguanylate cyclase/phosphodiesterase [Clostridium sticklandii DSM
           519]
 gi|308826147|emb|CBH22185.1| putative Diguanylate cyclase/phosphodiesterase precursor
           [Clostridium sticklandii]
          Length = 844

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 219/446 (49%), Gaps = 11/446 (2%)

Query: 516 ANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            +D+ EQ   S E +    + D+LT +PNR +  + +   +      + +   +M+IDID
Sbjct: 394 LHDLYEQIYNSEEELKKLVYFDSLTKLPNRIALTNDIQEHV---KQQEAITAALMIIDID 450

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND LG   GD+ L+ + +    L      + R+ G+ F  ++    ++ +I   A
Sbjct: 451 NFKYINDTLGHHFGDEFLIEIAKIFLNLSSQAIRVYRIGGDEFAFLVT--ASTQQIEIAA 508

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  PI + + +I  T S+G A +  +  T  ++LKNA++AMY AK RG      
Sbjct: 509 QEIMNCVHKPIFMDKIKIHTTLSMGIAVYPFAGKTVQQLLKNADIAMYEAKQRGKERYVF 568

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   ++    ++  I+ +L  A++N E  L + P  +  +++I G EALI+W   + G +
Sbjct: 569 FDDVMNYRIIEKTKIEHNLQFALDNKEFMLYFQPQYKTSNDKISGFEALIRWKSRELGMV 628

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             ++F+ IAEE   I AI  ++             +     I + +NI+   L+ ++  +
Sbjct: 629 PPNDFIKIAEESQKIVAIGKWVFVNSCDFASKLIRR-GYKDIKVSVNISIVQLIQDDFTD 687

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A I         I+L  +E+V++ + + +   L  LR  G+S++LDDFGT  S LSY
Sbjct: 688 FILATIESKNLDFKLIELEITETVLIRSVQEAYTKLEALRSKGVSISLDDFGTGYSSLSY 747

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P  T+K + + +   T+      +   II MA  ++  +IA+ +  ++ +  L + 
Sbjct: 748 LQNLPITTLKMDRAFVEDITKNTITENLASFIISMAHKLDLEVIAEGVETKLQLDILKKY 807

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD +Q  + + P+       LL+ +
Sbjct: 808 NCDKVQGYYYSKPVPEEQAFLLLESK 833


>gi|187478931|ref|YP_786955.1| signaling protein [Bordetella avium 197N]
 gi|115423517|emb|CAJ50052.1| putative signaling protein [Bordetella avium 197N]
          Length = 692

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/419 (27%), Positives = 211/419 (50%), Gaps = 9/419 (2%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR    +RL   +  ++ +   +  V+ ID+D +K +ND  G   GD +L +L RR
Sbjct: 269 TQLPNRALLDERLAQAVSRASAN-RSQFAVLFIDLDGFKAVNDAYGHQNGDSLLRALARR 327

Query: 599 IG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           I  E+L+  D++ARL G+ F I++         A+ A  +   ++  I +    ++VTAS
Sbjct: 328 IEDEVLRPGDLVARLGGDEF-IVVSDVIEPTDAANVAERLIDVLSREITIDGHSLSVTAS 386

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKEDLCLA 714
           +G + +         +L +A+ AMYHAK  G           ++    +++ + +DL  A
Sbjct: 387 VGISIFPGDGGDGHTLLTHADAAMYHAKRLGSARRYSYFEPAMNENAREQLQLLQDLRQA 446

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
              +EL L Y P        +VG EAL++W+HP+ G I  +EF+ IAE   +I +I  ++
Sbjct: 447 RSRNELVLHYQPKFIAPAGPVVGAEALLRWNHPQRGLIPPAEFIPIAERTGLIYSIGEWV 506

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+   R +  WRD        + +N+++       L   ++  + + L   S + +  +E
Sbjct: 507 LDEACRQMRIWRD-LGHTTWTVAVNLSAMQFSQVGLTNNIRETLERHLLPASCLAIEITE 565

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           +  M + E S  +L  L  +G+S+++DDFGT  S L YL  +P + +K +   ++     
Sbjct: 566 TTAMRDAEGSLTVLRELSALGVSISIDDFGTGYSSLLYLKRLPANELKIDRGFISQLEHD 625

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++  AI+ +II + + +   I+A+ +      + LT +GCD +Q   +  PL  +  LK
Sbjct: 626 QEDAAIVSAIIALGQQLNLKIVAEGVETAAQQRFLTELGCDSLQGFLLGKPLSASEFLK 684


>gi|254456915|ref|ZP_05070343.1| sensory box sensor/ggdef/eal domain protein [Campylobacterales
           bacterium GD 1]
 gi|207085707|gb|EDZ62991.1| sensory box sensor/ggdef/eal domain protein [Campylobacterales
           bacterium GD 1]
          Length = 633

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 215/443 (48%), Gaps = 11/443 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT +K         +  D LT +PNR S   ++  I   +      +  V+ +D+D +K 
Sbjct: 197 ITTKKDL----EYISMHDTLTNLPNRHSLNTKIEYITSNANRH-KTKFAVIFLDLDYFKN 251

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD++L ++ +++   ++  DI++R+ G+ F II +   +   I +    + 
Sbjct: 252 INDTLGHDVGDELLKAVAKKLTSSVRENDIVSRIGGDEFIIIAVDIMSENDILEIVKNIL 311

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
                 I +    + ++AS+G + +    I   E++K +++AMY AK +G ++   F+  
Sbjct: 312 NIFREDIIVSGNTLRLSASLGISIYPDDSINFIELMKFSDIAMYKAKEQGRDNFNFFKPK 371

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   V I  DL  A++N+E  L Y P +  +  +I+G E LI+W+HP  G I  +E
Sbjct: 372 LDVDIHYEVEIINDLQKALDNNEFKLYYQPKVDAISGKIIGAEGLIRWEHPSKGIIPPNE 431

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE    I  I  F++    + I           I + INI+++    +++   + +
Sbjct: 432 FIPFAENTGFILKIGEFVINEGIKYISKLNLHGYD-NIHVSINISNRQFQHSDIYNQVNS 490

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +   +    ++ L  +ES+++ N E +   L +++K+ + + +DDFGT  S LSYL   
Sbjct: 491 ALKVHMVKGKQLALEITESLLVDNVEDTIEKLHKIKKLNVKICMDDFGTGYSSLSYLKLF 550

Query: 877 PFDTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           P D++K + S +      +     +L +II M + +   +IA+ I     ++ L    C 
Sbjct: 551 PIDSLKIDKSFVDDIKDNSNNERILLNTIIAMGQTLGLDVIAEGIEEGYQLRYLQSKNCQ 610

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
           Y Q  + +  +  +  + LLK +
Sbjct: 611 YYQGYYFSKAVTEDEFIALLKNQ 633


>gi|13475596|ref|NP_107163.1| hypothetical protein mll6708 [Mesorhizobium loti MAFF303099]
 gi|14026351|dbj|BAB52949.1| mll6708 [Mesorhizobium loti MAFF303099]
          Length = 518

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/434 (27%), Positives = 208/434 (47%), Gaps = 12/434 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+ NR+ F ++L   L  +  +   +  ++ ID+D +K +ND LG   GD
Sbjct: 81  LHLATHDVLTGLQNRRRFGEQLQQALA-ALGEPKPKAALLQIDLDDFKSVNDTLGHGAGD 139

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L     RI + L+  +   R +G+ F +I + +    +    A ++  +   P  +  
Sbjct: 140 TLLQLAAGRIRDALQDGESAYRYAGDEFAVIQLGKEQPAEAERLAGSLVDAFKTPFVING 199

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             + V +SIG A          +++K A++A+Y AK  G     +F  S          +
Sbjct: 200 IPVFVGSSIGIAFGPEHGTDGEQLMKAADIALYAAKTDGRGCARTFNRSMLLLLEQRENL 259

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+E  ELYL Y P+IR     ++G EAL++W HP+ G I  S F+ IAE   ++
Sbjct: 260 RRSLRTALERGELYLEYQPLIRPPA-SVIGFEALLRWRHPEVGIIPPSVFIPIAEADGLM 318

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LE   R  ++W        + + +N++    L   L + +  +I        R
Sbjct: 319 DQIGRWVLEEACRQALTWPSS-----LTVAVNLSPAQFLSGTLTDTVAQVIDAVGIRADR 373

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E+V++     +   L  L  +GI ++LDDFGT  S LSYL   PFDT+K +   
Sbjct: 374 LELEITETVLLEKTIDNIDTLNTLNVLGIRISLDDFGTYYSSLSYLKNFPFDTLKIDQYF 433

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           I+RSII +A  +  ++ A+ +   +  + L +  CD +Q + +  PLG
Sbjct: 434 IADLETDLKSQTIVRSIISLAHGLGISVTAEGVETSVQARWLIKENCDCLQGNFLGRPLG 493

Query: 946 FNSILKLLKERFPL 959
             +    ++ R PL
Sbjct: 494 AEATSDFIR-RSPL 506


>gi|254293180|ref|YP_003059203.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
 gi|254041711|gb|ACT58506.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
          Length = 732

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 216/437 (49%), Gaps = 14/437 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A  D LTG+ NR     ++ T              + +ID+DK+K IND +G 
Sbjct: 289 HQEAQKLALHDPLTGLANRMLLKKQIETAKADVKR-GREGFALHLIDLDKFKDINDTMGH 347

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD+++     R+ +  +  D +AR+ G+ F +I I   ++  ++  A  + + +A   
Sbjct: 348 PAGDELIRQAATRLKDACRANDTVARIGGDEFAVIQIEATSTNTVSRLARRINEQMARAF 407

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
            +   E+ V+ASIG A   + +    E+ + A++A+Y AK  G +    F          
Sbjct: 408 VINNTEVYVSASIGIAIDATGESQQEEIHRRADIALYKAKEAGRDQYCFFEDEMDAELKH 467

Query: 704 RVMIKEDLCLA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +  I+ DL  A    + + L +VY P +      I G EALI+W+HP  GN+S  +F+ I
Sbjct: 468 KHKIERDLRQALQEPDKNGLRVVYQPQVSANGRHIRGFEALIRWEHPVRGNVSPVDFIPI 527

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  ++ A++ F+++   +  + W +      + + +N+++K+L  +     + AL S+
Sbjct: 528 AEETNLVIALDEFVMKEAFKTALKWPE------VTMAVNVSAKELHQDNYPHKIIALASE 581

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +I+L  +ESV++ +  R    L  L+  G  + LDDFGT  S LSYL     D 
Sbjct: 582 YNIRPDQIELEITESVLLEDSPRVAKTLKILKAAGFKIALDDFGTGYSSLSYLRRHQVDK 641

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      E   A++++I+ + +++  ++ A+ +        L + GC Y+Q  
Sbjct: 642 LKIDQSFVASIGVREDASAVVQAILSLGESLGLSVTAEGVETIEQRDSLRKRGCAYLQGY 701

Query: 939 HVASPLGFNSILKLLKE 955
             + PL   SI++++K+
Sbjct: 702 LFSKPLEEKSIVQIMKK 718


>gi|148975773|ref|ZP_01812604.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145964846|gb|EDK30098.1| sensory box/GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 844

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 104/453 (22%), Positives = 212/453 (46%), Gaps = 9/453 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA+D    + S   +   A  D+LT +PNR     +++  +  S  +  L   ++ +D+D
Sbjct: 391 IADDFNRIQSSRRRLQHMAKHDSLTALPNRSELELQVSRAIAHSKLEGKL-VALVFVDLD 449

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND  G A GD++L  + +R  E+L   D+++R  G+ F   L S ++ ++     
Sbjct: 450 NFKRINDQFGHASGDELLKQIGQRFEEILGENDVVSRFGGDEFVFCLPSIHDLIEAERKV 509

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             ++       NL    ++   S G + +        E+L  A++ +Y AK         
Sbjct: 510 QQIQDVFKPSFNLNGTSVSTRCSAGVSIYPYDGTEVEELLTKADIVLYKAKESNKGDAVF 569

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +    +        +++ L  A+E  E  + Y P +    +++ G+EAL +W++   G +
Sbjct: 570 YDDVINRKVKYDYSVEKQLETALERGEFSVFYQPQVDSHSKQLKGVEALCRWNNSLLGFV 629

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+  AE +  I  I  F+L +   D ++         + + +N++ K + +    E
Sbjct: 630 SPLDFIPAAERVGKIHEIGEFVLRKACEDTLNLMPNGPG-AVCVSVNVSPKQVFELGFEE 688

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L+ +   +P R+ L  +E++++ +      +L RLR  G  ++LDDFGT  S L+Y
Sbjct: 689 KVICLVEQVGIAPQRVTLELTENILIKDLHIVEPILRRLRDYGFGISLDDFGTGFSSLNY 748

Query: 873 LGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S +    S++    ++++II +  + +  ++A+ +     + +L + 
Sbjct: 749 LNTLPITEIKIDRSFIGKLNSSQHSETLVKAIIDIGASCQMKVVAEGVETPEQMAKLQQY 808

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            CD +Q  +   PL       LL   FP+   +
Sbjct: 809 HCDLLQGYYFDKPLTAK---GLLDAYFPVNSES 838


>gi|239982452|ref|ZP_04704976.1| putative phosphodiesterase [Streptomyces albus J1074]
          Length = 722

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/423 (27%), Positives = 212/423 (50%), Gaps = 7/423 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R+ T LD +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 273 LRDPLTGLPNRQWLLERIWTALDEAEQA-GTRSALLLIDLDRFRSVNDTLGHLAGDRLLL 331

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +   +  P++L    + 
Sbjct: 332 QIAERLRPALPRGAEAARLGGDEFAVLLPVADSTTAAQRVARRLVSELGSPLDLDGLTLV 391

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +      +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 392 LEASAGVAVYPDHAQDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 451

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D  + GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 452 RALDAGEVELHYQPKVRF-DGHVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 510

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 511 YVLETALGQVARWRAQGLNVP--VAVNVSPRDVHSPGFAGAVAARLARHGVPAGALQLEI 568

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 569 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 628

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 629 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPAGETT 688

Query: 951 KLL 953
             L
Sbjct: 689 AWL 691


>gi|222530201|ref|YP_002574083.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222457048|gb|ACM61310.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 571

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/558 (20%), Positives = 246/558 (44%), Gaps = 26/558 (4%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER    ++ S    W +DI +  V  +          S  ++G I      +  ++ ++ 
Sbjct: 22  ERLVQ-LIKSERGFWLYDIEKKGVYISNGFE----YISIQINGSINFIQDVMTESEFEHL 76

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523
           + ++   +   +       R++  D    W+ +    + +   + L+ +G   D+T    
Sbjct: 77  KKLVRDSIEKGQNGFSG--RIKLKDG--RWIFVCATILYSEQ-EPLKIVGTFEDVTPHVS 131

Query: 524 ---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
              +    I   A+ D +TG+PNR    + L   +D S  D++    V+ I++  +  IN
Sbjct: 132 CDLRLSRYIELIAYYDEITGLPNRNFLNEVLREKIDKSKKDNSG-FWVIFIEVSNFGYIN 190

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++ G +VGD+ L ++T  I + L       R  G+ F ++  +      +A     + + 
Sbjct: 191 ELFGHSVGDEFLKAVTFEIKKFLPRDWTFCRFGGDEFVVLTSNIQ-RTSVAMVVENLIER 249

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG------NHVES 694
            + P N++ + +    ++G + +      +  +LKNAE+A+  AK  G            
Sbjct: 250 FSRPWNVMGKWLYANINVGISGYPQDGEFADTLLKNAEIALTAAKKHGRDFGKSQYEFYK 309

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      RV I+ ++   ++  + +LVY P +      +VG E+L++W+  + G ++ 
Sbjct: 310 ISMEEEILRRVEIESEISRGIQERQFFLVYQPKVSYDGRTVVGFESLLRWNS-QKGILTP 368

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ IAEE  ++  +N  +L+ + +DI  +  Q     I + +N++ K+     +   +
Sbjct: 369 DKFIQIAEESGLVYDLNRLVLDIVCKDIK-YIKQKTSKTIPVAVNLSGKEFAMYNMIGVL 427

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +      P  I++  +E V++ N E ++ +L  L + GI +++DDFGT  S    L 
Sbjct: 428 NERLKAHSLLPEDIEIEVTERVILNNVELTKQILNSLHEKGIKISIDDFGTGYSSFELLL 487

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   +           I+++II MAK +    IA+ +  +     L  +GC
Sbjct: 488 QLPIYALKIDKKFINKIHLFGNEYIIVKNIIYMAKEMNLKTIAEGVENKEQYDILRELGC 547

Query: 933 DYIQDSHVASPLGFNSIL 950
           D  Q  + + P+    ++
Sbjct: 548 DQFQGYYFSKPVSIEEVV 565


>gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
 gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
          Length = 617

 Score =  435 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/438 (29%), Positives = 215/438 (49%), Gaps = 8/438 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +L  A  D LT +PNR SFL RL  ++  S  D      V+ +D D++K+IND LG
Sbjct: 168 AHSQMLDLAQSDRLTRLPNRPSFLRRLDNVISHSQDDPQTSFAVLFLDCDRFKRINDSLG 227

Query: 585 IAVGDDVLVSLTRRIGELLKFP---DILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             +GD +L  + RR+  L +     D++AR  G+ FGI+L+   +   +  FA  +   +
Sbjct: 228 HRIGDQLLKGIARRLTNLEQKHVEVDMVARFGGDEFGILLVGIADQTAVTAFAETVYGIL 287

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
           + P  L    I  TASIG     SS  ++  +L++A++AMY AK         F   +  
Sbjct: 288 SRPFLLAGHNIFSTASIGMVWGDSSYASAEHLLRDADVAMYQAKAHMHLKYCWFEPGMHH 347

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + ++  + LA++  E  + Y PII +   ++VG EAL++W HP  G I  ++F+ 
Sbjct: 348 LAVKLLNLETGMRLALQREEFEVHYQPIIDIRRMKVVGFEALVRWRHPVEGLIPPNDFIP 407

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALI 818
            AEE   I  +   +L+     I  W         I I +NIA++ LL   +   +Q  I
Sbjct: 408 FAEETGFIVELGAQVLKMACMHISDWEKAGVLDSEITISVNIAAEQLLQPSILSHIQHCI 467

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                S  R++L  +E  ++G+ E    +L  L++  I L++DDFGT  S LSYL  +P 
Sbjct: 468 DSAGISAHRLRLELTERALIGDHELVDEILQALKQQNIRLSIDDFGTGYSALSYLHQLPV 527

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +         + I+  II MAK +   ++A+ I     + +L ++GC Y Q
Sbjct: 528 DCLKVDRLFVKSITDDPDSLGIVPLIISMAKTMNMEVVAEGIENSTQLNQLQKLGCQYGQ 587

Query: 937 DSHVASPLGFNSILKLLK 954
                  +G + +  LL 
Sbjct: 588 GYLFHKAVGADEVAALLS 605


>gi|162146963|ref|YP_001601424.1| hypothetical protein GDI_1168 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785540|emb|CAP55111.1| conserved protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 673

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/596 (21%), Positives = 255/596 (42%), Gaps = 50/596 (8%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            G +L  +     V+Q V A G  +QG           +    D +  +      +    
Sbjct: 113 IGAILADMPAAVVVVQDVSAAGGPAQGADPA---LRPVLDRIPDGIALFGADCGLLYRND 169

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
              + L L    +    +                 + +               R AD   
Sbjct: 170 LFGSTLALPDDLLWPGTQA--------------RAIMAVQSGDTA--------RTADGAC 207

Query: 493 HW---MIIRIRPMSN-----SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            W   ++ + R +        +G  LR      D+T+ ++S          D++TG+ N 
Sbjct: 208 DWTTEILRQGRSLRLSWTGLPDGRRLRL---CRDLTDLRRSESRARFLEQHDDVTGLANL 264

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                 L  + +      + R TV+  D+  +K+IN+ +G A GD++L  +  R+  L++
Sbjct: 265 PGLQTHLQMLCER----PSERFTVLYFDLFGFKRINNTMGHAAGDELLRLVADRVRRLME 320

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D+ A + GN+F +++ +E +S  I   A  +R  ++ P+++L  ++TV   IG   + 
Sbjct: 321 PDDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRPMSVLGHDVTVGVGIGVVRFP 380

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
           +       ++ NA++A+ +AK   G  +  +     R  +    ++ DL  A+   E  L
Sbjct: 381 ADGSDRDTLMWNADIALQYAKDGKGEGIRFYNPVMDRMRQKRMDLERDLQRALAQDEFVL 440

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + +    IVG+EALI+W HP  G I   +F+ +AE + ++  I ++ L    R  
Sbjct: 441 FYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAEGMGLMYDIGVWTLNTACRQA 500

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W +      I + +N+++     + L E +   +  +     R++L  +E+ ++ +  
Sbjct: 501 SAWPE-----DIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGRLELEITETAMIDDVP 555

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAIL 899
           R+  +L +LR++G+ + LDDFGT  S LS+L  +PF  +K + S +    +      AI+
Sbjct: 556 RAARVLRQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSFVRELGQGVGDGAAIV 615

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +I  +  ++     A+ +  +     L ++ C  IQ   +  P   + I  LL +
Sbjct: 616 GAITSLCGSLNVVATAEGVETQEQFDYLKQINCSEIQGFFICRPRPASEIQPLLDQ 671


>gi|83644741|ref|YP_433176.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632784|gb|ABC28751.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 912

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/675 (21%), Positives = 290/675 (42%), Gaps = 9/675 (1%)

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            I   G+A   +L   ++           + +    L       Y   +    A   +  
Sbjct: 220 LIKNGGMALFLLLPLYAWSSLRFGRFGGVLAVCLSGLAALLAYGYGDTRYNSLAHFNLFH 279

Query: 344 WILIFIWFIGLWMAITKRLDNDI--IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
             +  +    L+++        +      LV      +  +   +   V       +   
Sbjct: 280 SEVAVMTIFSLYLSALAADRARVEDAIEQLVQRRTRELEAVNQELQDEVHIRKQAERSFR 339

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +   R    +  +G  +   D     V      + + G     ++G       ++    +
Sbjct: 340 TSTRRYRAIIETAGSPIIVMDKNFRIVQWNGAASRLFGYHREDIYGKN-YITCFVPKAFQ 398

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D     +   +         E  + AAD   H M+  I  + + + ++ + I I  DI+ 
Sbjct: 399 DETAWKITKVLETGVPVENLESEMTAADGGSHVMLWNINRVVDVDEELTQAIIIGQDIST 458

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++   +   A  D LTG  NR+ F DR    L  ++   +    ++ +DID +K+IND
Sbjct: 459 IRETQNQLHFLAHYDVLTGAANRRLFEDRCRQALKQASRRQH-DVGLISLDIDHFKRIND 517

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L  + RR+   ++  D +ARL G+ F I+L   N +         + ++I
Sbjct: 518 TLGHDAGDALLQEICRRLASCVREEDTIARLGGDEFAILLNRVNGAEDCDLVGRNLLEAI 577

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P++L  +++ +T SIG        +  S +LKNA++AMY AK  G N+++ ++     
Sbjct: 578 TRPVDLPGQQLVITTSIGVTVSPRDGVEYSVLLKNADMAMYRAKKAGRNNIQMYQKEMND 637

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                I  +++L  A+   +  + Y P I L ++ IVGLEAL++W HPK G ++  EF+ 
Sbjct: 638 ELTHQINTEQELRAAISGHQFDIYYQPQIDLENQHIVGLEALLRWRHPKRGVLAPHEFIS 697

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  ++ A+  ++         + +   +   + + INI+++ L   ++ E ++ +I+
Sbjct: 698 VAEQTGLLPALGEWIFYNACLQCRAIQAM-SRSHVQVAINISARQLHHPQMVETLKRVIA 756

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +P+ + L   E V++ NP  +  +LG L++IG+++T+D FG+  S LS L  +P D
Sbjct: 757 EIRVNPAFLNLEIGEQVLVNNPAEAAEILGGLKEIGVNITIDSFGSGLSSLSNLARLPVD 816

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + +L           AIL +++ +A  +   +I + I               Y+Q 
Sbjct: 817 AVKIDRALTRNVPGDDYDAAILETLLSIASRMHMRVIVEGIERTEQETFFRNHNVRYVQG 876

Query: 938 SHVASPLGFNSILKL 952
              + P+  + + + 
Sbjct: 877 HLYSLPMPSDQLPEF 891


>gi|88705789|ref|ZP_01103498.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis
           KT71]
 gi|88699860|gb|EAQ96970.1| GGDEF/EAL/PAS domain containing protein [Congregibacter litoralis
           KT71]
          Length = 968

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 128/573 (22%), Positives = 243/573 (42%), Gaps = 12/573 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHG 447
            V A     + +    +   L +  + D ++  D  R  V  +   A ++G+     + G
Sbjct: 354 AVEAQKEDHRRLEDLNQYFELFLNRTTDFMYFKDASRRFVFASHSFAQLVGMPDRHGVEG 413

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN- 506
                         + +    +     R   +    R +  D    WM     P+   + 
Sbjct: 414 KTDE--DVFPPELAEEYLRQEEELFRSREPLVDQRQRFKKLDGTLGWMSTYKWPVFAPDS 471

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +I+   GI+ DIT+     + +   A  D LTG+PNR  F DRL   +  +     +  
Sbjct: 472 NEIIGLFGISRDITDLHDHEQQLEQAAHYDALTGLPNRTLFFDRLDQAMASADRR-LVEL 530

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+DK+K+IND  G A GD +L  L+R     ++  D +ARL G+ F  ++   N+
Sbjct: 531 AVVYMDLDKFKEINDEHGHATGDQLLKQLSRVFSSQIRRSDTVARLGGDEFVFLICDFNS 590

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAK 685
             +       +  +I  P  +    + V+AS G A ++S+  +    +L+ A+ AMY AK
Sbjct: 591 RKECIALLDRLMSTIHEPRVVAGISMQVSASAGIAFYSSAMDVGPDSLLRQADQAMYRAK 650

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             G N        +  + R  ++     A+EN E  + Y P+I +    +VG EAL++W 
Sbjct: 651 AGGRNLYRIANEEADSALRASVEV-FGQAIENEEFDIYYQPLIDMRAATVVGAEALVRWR 709

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +   +F+       +   ++ ++          WRD      + + +N+ + D+
Sbjct: 710 HPEKGLLLPDQFLPGLAGHRLAVKLDAWVRGEALAQQKRWRDAGLD--LEMHVNVTAVDI 767

Query: 806 LDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +  E    ++  I+++     SR  L   ES  + + +R   ++   R++G+   LDDFG
Sbjct: 768 IHPEFVRRLRTDINRSEGLPESRFTLEILESAAVADADRINAVIAECRELGVHFALDDFG 827

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+++  +   TVK +   +          A+L +I+ MA+  +  +I + +    
Sbjct: 828 TGYSSLAHIKDLRASTVKIDQRFVHSMHASYDDFALLTAILAMARAFDREVIVEGVETME 887

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L  +GC   Q    A  +        ++ 
Sbjct: 888 QGEMLLHLGCTLAQGLLFAPAMPPEEFASWVEA 920


>gi|148546196|ref|YP_001266298.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148510254|gb|ABQ77114.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 694

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL       + R  V+ + +
Sbjct: 242 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQH-RVAVLCVGL 300

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 301 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 360

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P +L   +I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 361 AQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 420

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++LYLVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 421 FYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGM 480

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  +EL 
Sbjct: 481 VPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQ-GFSDLRMAVNLSTVQLHHSELP 539

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 540 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 599

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 600 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVA 659

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 660 QGCHEGQGYHYSKPLSARELTHFLKQ 685


>gi|330966143|gb|EGH66403.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 683

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 215/438 (49%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  S     + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++ +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEKNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M + + +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDIKTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLTYLKQ 674


>gi|83592326|ref|YP_426078.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83575240|gb|ABC21791.1| diguanylate cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 826

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 222/458 (48%), Gaps = 15/458 (3%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G++ R + +  D      ++E I   A  D+LTG+ NR  FL     +L       
Sbjct: 371 KDEIGEMARAVSVFRD------AMERIDYLASNDSLTGLLNRHGFLAGGERLLARGQRRG 424

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ I++ ++K +N + G   GD +L  +  R+  L    D++ARL G+ F ++ +
Sbjct: 425 W----LISINLRRFKDVNQMFGHQTGDTILGEVADRLRRLAGPEDLVARLGGDDFALLAL 480

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             ++  +       +  ++   I +    + + A IGFA W         +L+ AELAM 
Sbjct: 481 DPDDEGRALALCRNILAALRPAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQ 540

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK+  G+ +  +R   S     R  +++DL   +   EL L+Y P + L    +VG+EA
Sbjct: 541 QAKNDPGDPICRYRSALSEDLEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEA 600

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+HP+ G I  + F+ +AE   +I  +  ++LE   R +  WRD   M  +   +N+
Sbjct: 601 LVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCRQLRLWRDD-GMSDLKGSVNM 659

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   +   ++   +   +  T      +++  +E V + + +R+R  L  LR +G+ L +
Sbjct: 660 SPVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDEQRARRRLEGLRALGVGLAI 719

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P  ++K + S +   T   ++  + R+II +  +   T++A+ I
Sbjct: 720 DDFGTGYSALAYLKRLPATSLKIDQSFIREVTDQPEQARLCRAIIGVGHDFGLTVVAEGI 779

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                +  L   GCD+ Q  + A PL      K+L+++
Sbjct: 780 ETAEHLAFLRAEGCDFGQGYYFAKPLEAQDFAKVLRDQ 817


>gi|170696846|ref|ZP_02887942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
 gi|170138020|gb|EDT06252.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria IOP40-10]
          Length = 814

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 130/534 (24%), Positives = 244/534 (45%), Gaps = 9/534 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  + DIA   G    ++          +  +D+      L   +      +  EFR+R 
Sbjct: 271 IYISHDIAR-FGHDRATLLASPVWANELVAQDDQARVDAALARILDKDTEGVSIEFRLRT 329

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D  +  +  R  P+ + +G ++   GI  DI E+K + E I   A  D LTG+ NR  F
Sbjct: 330 GDGAYRCVENRYVPVRDKDGRLIEVEGIIIDIAERKAAEEKIARLAHTDALTGLANRAGF 389

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L R+      +A    +   ++ + +D+++ +ND LG  +GD +L  +  R+G  ++  D
Sbjct: 390 LARVRHAFA-AARHGTMPFAILFVALDRFRPVNDRLGYPIGDLLLREVAERLGNCVQESD 448

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARL G+ F ++             A  ++ ++A P  L   ++ ++ SIG  ++    
Sbjct: 449 LVARLGGDAFAVVQGEMIEPADAGALAAKLQAALAAPYLLDGNDVRISVSIGIRAYVHGD 508

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYH 725
             +  ML   +LA++ AKH GGN              +RV + +DL  A++  EL L Y 
Sbjct: 509 SGADAMLMQTDLALHRAKHHGGNRYRFHSDELDHEVRERVALADDLKGAMDRGELELQYQ 568

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    I+G+E L++W HP  G I+   F+ IAE    + A+  ++L++  R + +W
Sbjct: 569 PEVELSSGNILGMEGLVRWHHPTRGLIAPGVFIPIAEREGSMAALGRWVLDQACRQMRAW 628

Query: 786 RDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           RD+  + P+ I IN++  +L   +     +    +K   +PS ++   +E+ +       
Sbjct: 629 RDE-GVAPLMIAINLSLFELWSAQTFVRDVAEAAAKWHLAPSDLEFDVTEATLARLSWAQ 687

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
             +L +L  +G  L +DDFG+  +   Y+     + +K   SL+    S  +  A + +I
Sbjct: 688 SDILPQLHALGAKLAIDDFGSNYASFEYVKAYRVNHLKIARSLIHRSTSDPESAATIHAI 747

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTR-MGCDYIQDSHVASPLGFNSILKLLKE 955
           +  A +I   +IA+ +  E     L         Q    +  +G     +LL++
Sbjct: 748 VTFAHSIGIGVIAQGVETEQQRALLAATNRATSAQGFRFSEAVGAARASELLRQ 801


>gi|289642402|ref|ZP_06474548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia symbiont of Datisca glomerata]
 gi|289507747|gb|EFD28700.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia symbiont of Datisca glomerata]
          Length = 884

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 219/452 (48%), Gaps = 7/452 (1%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +    +     +     E+  + + +   A  D LTG+ NR    DR++  L     D  
Sbjct: 436 DEADFVQSVANVLAAAIERHNAEQKVRRQALHDPLTGLANRILLHDRISGALGEIERDGG 495

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  ++++D+D++K+IND LG  VGDDVL  +  R+G   +  D +ARL G+ F I+L S
Sbjct: 496 -RLALLLMDLDRFKEINDTLGHNVGDDVLREVAVRLGRATRPSDTVARLGGDEFAILLPS 554

Query: 624 ENN-SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               +      A  +R ++A  I++    + V  SIG     +       +++ A++AMY
Sbjct: 555 TPGGAADALAVAGCIRAALAERIDVGSLPLHVDGSIGITLAPADGRDPGTLVRCADVAMY 614

Query: 683 HAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK    G  V +      R +R+ +   L  A+   +L L Y P + L       +EAL
Sbjct: 615 RAKQLSLGVAVYAPDADQNRRERLELLGGLRSAIAGGQLVLHYQPKVDLRTGRTTAVEAL 674

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +    F+  AE+  ++K +   +L  +     SW D   +  + + +N++
Sbjct: 675 VRWQHPAHGLVEPGRFVPFAEQSNLVKPLTRRVLMLVLDQARSWWDAGRL--LPVAVNVS 732

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++ L D EL   ++A + +T   P  ++L  +ES VM N   +  ++ RLR  GI +++D
Sbjct: 733 ARMLHDAELISTVRAELDRTGLPPRALELELTESAVMVNTRNAMSVITRLRGEGIRISVD 792

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P   +K + S +     +    +I+RSII +A N++  ++A+ I 
Sbjct: 793 DFGTGYSSLAYLRDLPVHDLKIDKSFVVNVAHRTKDFSIVRSIIDLAHNLDLRVVAEGIE 852

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  L  +GCD  Q  ++  P+    +  
Sbjct: 853 SSEVCSLLRDLGCDEGQGFYLGHPVPPADLAA 884



 Score = 77.7 bits (190), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 2/113 (1%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +    +IV+  D         P    + G    +  G   ++L Y+H ++RD+   +
Sbjct: 61  RDILDRLPEIVFRTDAQGRWTYLNPAWTVVTGFEVEASLGK--HFLDYVHPDERDHTVAL 118

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             + V        +  R R     +  + IR   +   +G I+  +G   D T
Sbjct: 119 FMAVVAGGADHCHHVTRYRTRGGSYRRVGIRASLLRGPDGQIVGNLGTIIDAT 171


>gi|152964575|ref|YP_001360359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kineococcus radiotolerans SRS30216]
 gi|151359092|gb|ABS02095.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kineococcus radiotolerans SRS30216]
          Length = 593

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 139/555 (25%), Positives = 234/555 (42%), Gaps = 25/555 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +LA   S D V            +P  +   G+   ++ G       + H  DR+  R  
Sbjct: 27  ALAREAS-DEVLVTTAEGRITFCSPTFSRRWGVDRWALVGGDA--FSWTHPEDRERVRAA 83

Query: 468 LDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             +        +  E R V  +  +  W  +R        G +   +    D+TE   +L
Sbjct: 84  FAAVCRPGSESVDSEHRYVVRSTGEVRWCRVRFSDARRVPG-VGGIVWNCQDVTEVHDTL 142

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  D LTG+ NR+  L+ +   L        L        +D  K +ND  G A
Sbjct: 143 DALRHAATHDPLTGLGNRRRLLEVMERSLTDGLDSALLLLN-----LDGLKTVNDRHGHA 197

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSIAMP 644
           VGD V+ ++  R+  L+     L RL G+ F ++L  +       +AD A         P
Sbjct: 198 VGDLVVRAVAERLDALVGDRGWLGRLDGDEFAVLLRGQEGPLSRALADLAQRAVGVARRP 257

Query: 645 INLLEREITVTASIGFASWTSSKITSSE------MLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  R + VTA+ G A        +        + ++A++A+  AK  GGN    F  +
Sbjct: 258 VEVEGRAVAVTAAAGTALLPGGDAGADAVEAGRRLFRHADIALGAAKAAGGNRWVPFSRA 317

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 DR  +  DL  AV    L+L   P++ L     VG EAL++W HP+ GN+  S 
Sbjct: 318 LLDAAHDRAELAADLRHAVATGGLHLALQPLVDLAAGRTVGFEALVRWQHPQRGNVPPSV 377

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I  +  F+LE     ++  +  A    + + +N++   L    L   +  
Sbjct: 378 FVEVAEESGTILDLGAFVLESALEALVELQRAAGRSGLEVSVNLSGHQLQQPGLVAAVVD 437

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +   +P ++ L  +ESV + +   +R  L  LR  G+ + LDDFGT  S LSYL  +
Sbjct: 438 ALRRHGLAPGQLCLEVTESVAVADLATARNTLQELRSHGVRIALDDFGTGYSSLSYLRRL 497

Query: 877 PFDTVKFNGSLMTGSTEKR-----IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           P D +K + S +   + +R      A+L  I+ ++  +    +A+ I  E   + +   G
Sbjct: 498 PVDVLKIDKSFVDDVSGERADATGAAVLSGIVALSSALGLVTVAEGIETEQSHEVVRGAG 557

Query: 932 CDYIQDSHVASPLGF 946
           C + Q    A PL  
Sbjct: 558 CTWGQGYLFARPLSP 572


>gi|310658079|ref|YP_003935800.1| diguanylate cyclase/phosphodiesterase [Clostridium sticklandii DSM
           519]
 gi|308824857|emb|CBH20895.1| putative Diguanylate cyclase/phosphodiesterase with PAS/PAC
           sensor(S) [Clostridium sticklandii]
          Length = 671

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/629 (20%), Positives = 265/629 (42%), Gaps = 21/629 (3%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
            Y  M+ Y+    ++    +I  + I    +   +L ND+ +           ++     
Sbjct: 55  TYKLMQSYKGVFYVVVT-AVILFYLIKYDYSKIMKLTNDVSEKNEELVSFSEELIAMDED 113

Query: 387 IQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +Q  + +   +    ++ ++        S   +  W +  + +        ++G     +
Sbjct: 114 LQQKIESLNIAMKSINEQKQFIDDIFQNSNTSIVTWGLDGEVLDINNHFTELMGYDRQDI 173

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G    W   +   ++      L S +   R    YE +  A D +   M+     + N 
Sbjct: 174 IGKK--WYEILLPEEQKYKYYELASKLESDRKVQNYENKAVAKDGRIFDMLWNNAMIYNP 231

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             D+   +    D+T QK++   I   A+ D LTG  N  +F + +      S  +    
Sbjct: 232 QNDLTIVVSFGIDLTMQKQNERRIYELAYNDKLTGFKNLIAFENDIN-----SKINKKTS 286

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            T+  +D+D +K +N++ G   GD  L     R+  +    + + R  G+ F II    N
Sbjct: 287 FTLYYLDMDNFKHLNEIHGHKCGDMFLKDYASRLLTIFDRTN-VYRWCGDEFVIIEEDTN 345

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   I      +             E   + SIG   +         + KN ++A+Y AK
Sbjct: 346 DIN-ITKRIDEIALLTKNIWKYKNVEYYPSVSIGITKFPEDAENLEGLKKNMDMALYKAK 404

Query: 686 HRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G +   ++     +    ++ ++  +  A+ N    LV+ PI  +    I+ +EALI+
Sbjct: 405 SSGKSLAVAYHSDFQKDIEKKLDLENTITQALINESFRLVFQPIYSIKTGRIISIEALIR 464

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I+  E + IAEE   I  I+ +++++    + +  D+     I + IN+++K
Sbjct: 465 CKSLN---INIGEMINIAEESGQILQIDRWVIKKAFEIMKNELDKY---DILLSINLSAK 518

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            +   +L + +  +  +   +P++I+   +E  ++ + + S+ ++G+L+ +G  + LDDF
Sbjct: 519 SIASPDLIDYLSNITKEYNINPNKIEFELTEHSLIFDIDWSKEVIGKLKHLGFGIALDDF 578

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT+ S L+YL  IPFD++K + S +     T+K   I+  II ++ N+  T +A+ I   
Sbjct: 579 GTRYSSLNYLSTIPFDSLKIDKSYIDKIVDTDKSRVIVEQIIDLSHNLGLTTVAEGIEEN 638

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +  L ++ CDY Q   +  PL    ++
Sbjct: 639 EQLDILKKLDCDYGQGYLLDKPLELEDLI 667


>gi|313201990|ref|YP_004040648.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. MP688]
 gi|312441306|gb|ADQ85412.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylovorus sp. MP688]
          Length = 782

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/456 (28%), Positives = 226/456 (49%), Gaps = 10/456 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G + R  G   D    ++  + I   A+ D LTG+PNR SFL  L       A D  
Sbjct: 324 DELGKLSRAFGSMVDAIASRE--QSITRLAYWDELTGLPNRASFLRELGLA-LQQAQDQQ 380

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILI 622
               V+V++++ +K+IN VLG A  DD+L  + +R+   + +  D++ARL G+ F ++L 
Sbjct: 381 EHLAVLVMNLNHFKQINKVLGHAAADDLLRGVAQRLQSSIRQESDLVARLGGDEFALLLP 440

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                      A  + + +  PIN+  + + ++  IG A +        ++L NAE+AM+
Sbjct: 441 R-TGIANATHVANMLLQKLEAPINIANQSVDISMGIGIACYPEHASAQEKLLGNAEMAMH 499

Query: 683 HAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  + G  +            + +  +L  A+  +EL L   P I L + +I  +EAL
Sbjct: 500 VAKAKQSGAVLFDPAFDISSQGNLSLASELRQAIATNELALYVQPKIDLQNGKISAVEAL 559

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G +   +F+  AE+  +I  ++L++L   AR  ++WR      P  I +N++
Sbjct: 560 IRWRHPQKGLMFPDQFIPFAEQSGLISLVSLWVLAEAARVEVAWRKLGIDAP--IAVNLS 617

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++DL+D +L   +  L          I L  +ES +M +P+R++  L RL  +G+ L++D
Sbjct: 618 TRDLIDQDLPHKILTLHQDAGLVLGGITLEITESSMMDDPQRAQQTLERLSDMGLQLSID 677

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P   +K + S +    E      I+RS I +  N+   ++A+ I 
Sbjct: 678 DFGTGYSSLAYLKRLPVSELKIDKSFVLKMEEDESDRKIVRSTIDLGHNLNLKVVAEGIE 737

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                  L  MGCD+ Q  H++ P+        L+ 
Sbjct: 738 SRAAWDLLASMGCDFGQGYHISKPMPAADFPAWLQR 773


>gi|296135125|ref|YP_003642367.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Thiomonas intermedia K12]
 gi|295795247|gb|ADG30037.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Thiomonas intermedia K12]
          Length = 934

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 200/426 (46%), Gaps = 8/426 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+ NR    ++L  +L            ++ ID+D +K++ND  G A GD 
Sbjct: 503 HQATHDSLTGLLNRHGLHEKLDALLTPGQAA--APLALLYIDLDNFKEVNDSRGHAAGDA 560

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L   + R+   L+   I+AR  G+ F ++L   + +   A     +R ++  P  L   
Sbjct: 561 LLCQASERLRTRLQANGIVARQGGDEFTLVLPLADAATAQATADAMIR-ALREPFELAGG 619

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708
            + V AS+G A         +E+L+ A++A+Y AK  G    + F     +       + 
Sbjct: 620 PVQVGASVGIALCPQHACERNELLRCADIALYAAKAYGRGRAQMFNPTLDAEARTLAQLL 679

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+   E    Y P +   D  I   EALI+W HP+ G +    F+ +AE   +I 
Sbjct: 680 ADLRQALVRGEFVAFYQPRVNAADGRITSAEALIRWHHPQRGLLFPDAFIAVAESYGLIV 739

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L+   + +  WR +       + +N+++      EL   +Q  + +   +P+ +
Sbjct: 740 PIGRWILDAACQQMAQWRREGIDIA-RVSVNVSAVQFESGELVGQVQNALERHAVAPATL 798

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+++   +     L  LR +G++L LDDFGT  S ++ L  +P D +K + S +
Sbjct: 799 ELEITESLLVDENDALFAQLTALRDMGVTLALDDFGTGYSSMAALRKLPIDVMKIDRSFV 858

Query: 889 TGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   A+  +R+I+ +A+     ++A+ +  E   + L  +GC  +Q    + P+  
Sbjct: 859 IDLETDASALPAVRAIVALAQASHLHLVAEGVETETQARMLRELGCHELQGYLYSPPVEP 918

Query: 947 NSILKL 952
           +  L+L
Sbjct: 919 SKFLQL 924


>gi|94272625|ref|ZP_01292160.1| GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93450061|gb|EAT01426.1| GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 654

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 110/429 (25%), Positives = 208/429 (48%), Gaps = 11/429 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+PNR++ L++L   +            ++ ID+  ++ +ND +G   GD +L+  
Sbjct: 225 DSLTGLPNRRNLLEQLERSIAQHLRAKQY-GALLGIDLGGFRVVNDTMGHDAGDLLLIEA 283

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKSIAMPINLLER 650
           +RR+   ++  D++ARL  + F ++L   N+     +++  + A  +R++I  P  +  R
Sbjct: 284 SRRLRLYVRETDVVARLGSDEFAVVLEYLNDNLNQAAIRAEEVARKLRQAINRPFVINGR 343

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
           E  V  SIG   +        E+L  A +A Y AK  G N +  F  +   +       +
Sbjct: 344 ECHVNISIGICLFGRRDELYDELLIRANVATYQAKKTGRNLIRFFDETMQTALEARAAQE 403

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A++  E  L+Y+  +     + VG EALI+W HP+ G I   +F+ +AEE  +I 
Sbjct: 404 AELRRAIKE-EQLLLYYQPLLNAAGQPVGAEALIRWQHPEKGLIPPGDFIPLAEETGLIV 462

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +    ++ WR Q  +  + + INI++      +  + ++  ++     P R+
Sbjct: 463 DLGRLVLRQACAQLLQWRQQPELAQLTLAINISAHQFRQTDFVDQIEQTLTACSIDPHRL 522

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           KL  +ES ++ N   +R  +  L  +G+++ LDDFGT  S L+YL  +P   +K + S +
Sbjct: 523 KLELTESALLENRGDARAKMDELLAMGLNIALDDFGTGYSSLAYLKNLPVYQLKIDRSFI 582

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI+R+I+ MA  +   ++A+ +     +  L   GC   Q  + + PL  
Sbjct: 583 ANLGSDASDTAIVRAILAMAAELGLEVVAEGVEELTQLDFLREHGCSRFQGFYFSRPLPP 642

Query: 947 NSILKLLKE 955
           +      + 
Sbjct: 643 DEFAAYCRA 651


>gi|26987650|ref|NP_743075.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24982332|gb|AAN66539.1|AE016282_7 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 693

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL       + R  V+ + +
Sbjct: 241 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQH-RVAVLCVGL 299

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 300 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 359

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P +L   +I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 360 AQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 419

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++LYLVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 420 FYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGM 479

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  +EL 
Sbjct: 480 VPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQ-GFSDLRMAVNLSTVQLHHSELP 538

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 539 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 598

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 599 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVA 658

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 659 QGCHEGQGYHYSKPLSARELTHFLKQ 684


>gi|127514513|ref|YP_001095710.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella loihica PV-4]
 gi|126639808|gb|ABO25451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
          Length = 701

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 114/549 (20%), Positives = 228/549 (41%), Gaps = 18/549 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S + V+  +   + +     +  I G ++  +              D   F     
Sbjct: 158 ILEDSAEAVYISNHQHEIIAVNKAMCRICGYSADQLLNKS--------PLDLQGFCEASQ 209

Query: 470 SFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +        RG  Q E     +D          R +   +G+I  Y+ + +DI+ +K+
Sbjct: 210 RQIDFLQSLEDRGSWQGETLKTRSDGSQFPAWKSCRKLQ-IDGEI-FYVTLFSDISAKKR 267

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   A  D LTG+PNR      L  +L  +         VM +D++ +K +ND  G
Sbjct: 268 LESRLTEQAMVDTLTGLPNRHQLKLHLDQVLADATEVGGKPGAVMFMDLNGFKNVNDCFG 327

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD VL  +  R+         +ARL G+ F ++L    +S +I   +  +      P
Sbjct: 328 HATGDKVLQLVAARLEASCIDNAHIARLGGDEFTLVLSDCQDSEEIEAVSQQLLAIFDAP 387

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSD 703
             +  ++  +  SIG A +      ++++L  A+ AMY AK           ++      
Sbjct: 388 FEINGQKFFLGTSIGIACFPEHSDQAAQLLSFADTAMYCAKKSPNHVLFYDSQMHRDAQY 447

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++    DL  A   ++  L Y  I+ L   +++G+EAL++W   +   I +S+F+ + EE
Sbjct: 448 KLKTINDLRHAFSLNQFQLAYQVIVNLDGSQVLGVEALLRWHKSETEIIEASDFVPLLEE 507

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++  I  ++L      +  WR +    P+   +N+++  L   +  + +   +  +  
Sbjct: 508 TGLLINIGQWVLTTACEQVAKWRSE-IDKPLQACVNVSATQLEHPDFVKQVTHALESSGL 566

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             + + L  +ES ++  P+R +  L  L+ +G+ + +DDFG   S LS LG +P DT+K 
Sbjct: 567 PANGLVLEITESALLRQPKRVKATLNHLKALGVRIAIDDFGAGLSSLSKLGSLPIDTLKI 626

Query: 884 NGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           +       +  +   + +++I +A+ ++   + + +      + L  MG  + Q      
Sbjct: 627 DAGFAERLNDPQGRELCQAMIQLAQALKIQFVVEGVETLEQKQILAGMGQGFAQGYFYGY 686

Query: 943 PLGFNSILK 951
           P       K
Sbjct: 687 PTAAEQFTK 695


>gi|260549050|ref|ZP_05823271.1| ggdef domain/eal domain-containing protein [Acinetobacter sp.
           RUH2624]
 gi|260407778|gb|EEX01250.1| ggdef domain/eal domain-containing protein [Acinetobacter sp.
           RUH2624]
          Length = 684

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 209/436 (47%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  + + 
Sbjct: 305 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLQL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 483 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALQFENKKLFSTLEGL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIKPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 662 QGYLLGMPVNVGQLIQ 677


>gi|294815251|ref|ZP_06773894.1| Phosphodiesterase [Streptomyces clavuligerus ATCC 27064]
 gi|326443606|ref|ZP_08218340.1| putative phosphodiesterase [Streptomyces clavuligerus ATCC 27064]
 gi|294327850|gb|EFG09493.1| Phosphodiesterase [Streptomyces clavuligerus ATCC 27064]
          Length = 723

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 215/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R    L+ + ++   R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 260 LRDPLTGLPNRQWLLERTWAALEEAESN-GTRSALVLIDLDRFRSVNDTLGHLAGDRLLL 318

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L + ++       A  +   ++ P++L    + 
Sbjct: 319 QIAHRLRHALPRGAEAARLGGDEFAVLLPAADSITSAQRVARQLAGELSSPLDLDGLTLV 378

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 379 LEASAGVAVFPEHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 438

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D  + GLEAL++W HP  G +   EF+ IAE   ++  +  
Sbjct: 439 RALDAHEVELHYQPKVRF-DGHVAGLEALVRWVHPDRGRVPPDEFIAIAESSGLMPHLTE 497

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 498 YVLDTALAQVAKWRAQGLKVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 555

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 556 TEHVLLEDPQRAADTLAGLTDHGVRMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 615

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 616 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPQEAT 675

Query: 951 KLLKER 956
             L+ R
Sbjct: 676 AWLRAR 681


>gi|51241736|dbj|BAD36772.1| PDEA1 [Gluconacetobacter xylinus]
          Length = 765

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 209/439 (47%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  +   +   A  D+LTG+ NR +    +  I+       N    + ++DID+++ IN
Sbjct: 286 EQHATKTHMTQLARYDSLTGLLNRGALHRVMEDIIAQP---GNRTLAIFMLDIDRFRDIN 342

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV +  RI  + K   +L+R  G+ F +++    +  +I D    + ++
Sbjct: 343 DALGHVYADQFLVEIAGRIRSIAKEDYVLSRSGGDEFVVVVPDC-DGKQIEDIGRQLLET 401

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P+ + +  ++++ SIG +++ ++   S  +L +A+ AM  AK  G        +   
Sbjct: 402 IGRPLQIGQNTLSISCSIGISTFPANGPDSESLLSHADTAMRKAKEDGRGIFRFANLEKN 461

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 462 QVAQDRLVLGSALRDSLAQGMLQLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSRFI 521

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R I+ W       P  + +N+++    +  L E + AL+
Sbjct: 522 AVAEETGQIEAIGRWSLLEACRQIVKWDRDGVHVP-TVAVNLSAVHFRNRALPEHIAALL 580

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P+R+ +  +ESV+M N   +  +L  +R IG  L++DDFGT  S LS L  +P 
Sbjct: 581 KDHNLKPARLTVEITESVMMDNSRDTEEVLQSIRNIGCGLSMDDFGTGYSSLSRLTRLPL 640

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L ++ CD +Q
Sbjct: 641 TEIKIDRSFINDFEYDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEKLNCDVMQ 700

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL    +   ++ 
Sbjct: 701 GYLFAKPLAPQDLEAWVRR 719



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDRDNFRT 466
           A+  + D         + +       ++ G+    + G   + L      H +DR  +  
Sbjct: 15  ALEQAIDATVIIGQENEIIFYNQAAESLWGIPRADVIGRNVDCLVPTRLRHEHDR--YID 72

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIANDITEQKK 524
                   R      E     AD ++    + +  +     +  +  Y+G+  ++TE+ +
Sbjct: 73  RNRETGHNRIVGTSREVEFTRADGEYICGELSLSKVQIGTGDKRLTYYMGVMKNVTEESQ 132

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD--DNLRPTVMVID 572
             + ++     D L  + +    +  +  ++         N    ++V+D
Sbjct: 133 RRKILILQ--NDVLQALAS-DMLIQDIGELICRKVEAFVPNSVAALLVLD 179


>gi|119897736|ref|YP_932949.1| EAL/GGDEF domain-containing protein [Azoarcus sp. BH72]
 gi|119670149|emb|CAL94062.1| EAL/GGDEF-domain containing signaling protein [Azoarcus sp. BH72]
          Length = 576

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/432 (26%), Positives = 204/432 (47%), Gaps = 8/432 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++ E I      D L+ +PN   F  ++   +  +         V+V+D+D++ +IN  
Sbjct: 143 RQADERIRELVNFDVLSALPNHNLFCTKVGDWIADAGAQ--AAGAVLVVDVDRFMRINAS 200

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   G+ +L  L  R+   L    +LARL  +RFG+ L       +    A  + ++  
Sbjct: 201 FGYDTGNVILRQLGERLAAGLAADVMLARLGSDRFGVFLPGVVEREQAEIAARWLLRAFE 260

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P    + E+ +TAS+G A          E+L NAE A+   K +GGN V  +  +   +
Sbjct: 261 QPFMKNDIELFLTASVGIAMVGGDGADVFELLMNAEAAVARVKCQGGNGVRCYDRAMNAA 320

Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ ++ +L  AVE  EL L Y PI+   D  +   EAL++W HP+ G ++   F+ +
Sbjct: 321 SAERLTLEAELRHAVERGELRLFYQPIVDP-DGTVRAAEALVRWQHPEQGLLAPDRFIPL 379

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A+E  +I  I  ++L         W D        + +N+++       L E ++  +  
Sbjct: 380 ADETGLITEIGAWVLTEACYQGRCWHDA-GHERFRVSVNVSAVQFGQPRLLETVREALRG 438

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           + + P+ + L  +ES +M + E +  +L  L+ +G+ + +DDFGT  S LSYL  +P DT
Sbjct: 439 SGFPPACLTLEITESSLMSDVESAAGMLRSLKNMGVRIAVDDFGTGYSSLSYLRRLPIDT 498

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + S +   +      AI+R+II +A ++    +A+ +        L R GCD  Q  
Sbjct: 499 VKIDKSFVRDVSNNGEDAAIVRAIIALAHSLGLGTVAEGVETAEQEATLRREGCDSFQGY 558

Query: 939 HVASPLGFNSIL 950
               P+     +
Sbjct: 559 RYGRPVPAEVFV 570


>gi|213970315|ref|ZP_03398445.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385467|ref|ZP_07233885.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063003|ref|ZP_07254544.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|213924987|gb|EEB58552.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 683

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  S     + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++ +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLTYLKQ 674


>gi|330877883|gb|EGH12032.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 683

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  S     + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++ +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEKNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLTYLKQ 674


>gi|71278615|ref|YP_267882.1| GGDEF/GAF/EAL domain-containing protein [Colwellia psychrerythraea
           34H]
 gi|71144355|gb|AAZ24828.1| GGDEF/GAF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 781

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 133/487 (27%), Positives = 242/487 (49%), Gaps = 20/487 (4%)

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDIT----EQKKSLEGILCNA 533
                RV+    +   ++     +  N     L  I + + I      +    E +   A
Sbjct: 299 WSVPVRVK---GEIVGLLNAASNVKINERAQQLGVIKMLSGIMGVTLSRVNLQEQLEHQA 355

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR  F  R+   +     D+ +  T++ ID+D++K +ND +G  VGD++L 
Sbjct: 356 CYDTLTGLPNRHQFNQRMELAIT---QDNPIPFTLLFIDLDRFKVVNDTMGHDVGDELLC 412

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +T+RI + ++  D  AR  G+ F ++L+++ +       +  + K++  P  + E  I 
Sbjct: 413 RVTQRINQQIRKEDFAARHGGDEFVVLLLNKQSKAIADITSARIIKALKEPFQIDEHSIF 472

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
           + ASIG + +      S E+LK A++AMYHAK +G +  + +          R  ++  L
Sbjct: 473 IGASIGISYFPEHSKNSEELLKYADIAMYHAKKQGKSSFKLYSSRLSDKIHCRQKLETLL 532

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            LAV+N EL+LV+ P I      +  +EAL++W+ P+ G IS+ EF+ IAEE  +I+ I 
Sbjct: 533 RLAVKNEELHLVFQPQINEDG--VFAIEALLRWEDPELGVISADEFIPIAEESLLIEEIT 590

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSRIKL 830
            +++ +  + I   R     P +++ +NI++K+ L  E L   +   ++      S ++L
Sbjct: 591 HWVINQSLQMIARLR--LICPSVYVAVNISAKNCLYPEKLKHCILTGLNDANLPGSALEL 648

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V + N   +  L   L   GI   +DDFGT  S L+YL  +P +T+K + S +  
Sbjct: 649 EVTENVFLQNVHNTNKLFKDLGHYGIRFAIDDFGTGYSSLTYLLNLPLNTLKIDRSFIQD 708

Query: 891 STEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +I +  ++ I+ +AK++    +A+ +  E   + L  +GC+  Q  + + PL    
Sbjct: 709 IHCNKIKLGVVKGILVIAKSLSMNCLAEGVEIEAQKQCLEELGCNRFQGYYFSKPLREKD 768

Query: 949 ILKLLKE 955
            L  LK 
Sbjct: 769 FLLYLKS 775


>gi|326387982|ref|ZP_08209586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207483|gb|EGD58296.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 670

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 137/450 (30%), Positives = 222/450 (49%), Gaps = 14/450 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +S   +L +A  D LT +PNR    +R ++              VMVID+D +K 
Sbjct: 218 VVERVRSRAALLHDALHDALTTLPNRVLLHERASSAFARLPATGKG-LGVMVIDLDGFKA 276

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF---------PDILARLSGNRFGIILISENNSLK 629
           +ND LG   GD +LV+   R+ + +              LAR  G+ F ++L   N    
Sbjct: 277 VNDKLGHHAGDCILVAAAARLRDAMNEALVDIGKDAKGTLARTGGDEFVVLLEGVNTPAI 336

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +   ++MP  +   EIT++ASIG A   +S     E+ ++A+LAMY AK  G 
Sbjct: 337 PLAIAERILAEVSMPFEVGRDEITISASIGIALSNASYHDYDEVQRDADLAMYQAKSSGH 396

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            H   F  +  +S R+   ++ ++  A+   +  L Y PI+ L   EI G EAL++W HP
Sbjct: 397 GHTVVFTCTLGKSVRLRMALEREIREAIREKQFVLHYQPILDLTSREIKGFEALVRWKHP 456

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLL 806
           + G +   EF+  AEE  +I  I  ++L    + +     +     + FI +NIA +  L
Sbjct: 457 ERGLVLPYEFIPTAEETGLIVFIGDWVLHEACQAMARLHARCRSDDLPFIAVNIAPQQFL 516

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            ++    ++ +I  T   P  +KL  +E V + + +R+R +L   R IG+   LDDFGT 
Sbjct: 517 QSDFVAYLRKVIEDTGVPPHCLKLEVTEGVAILDADRTRRVLEECRGIGVRTGLDDFGTG 576

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S LSYL  +PFDT+K + S +      K   I+ +I+ +A N++  ++A+ I       
Sbjct: 577 YSSLSYLHSLPFDTIKIDRSFIAALDQPKSRKIVHTILDLAINLDLNVVAEGIETTDQQA 636

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            LT MGCD  Q  H+  PL   +   +L +
Sbjct: 637 ALTAMGCDMGQGFHLGLPLEEKTAFSMLPQ 666


>gi|320008411|gb|ADW03261.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces flavogriseus ATCC 33331]
          Length = 977

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 150/756 (19%), Positives = 301/756 (39%), Gaps = 41/756 (5%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RW 278
            A A + L Y  +D   +S ++ L    + I R+    A++   +  L   L      R 
Sbjct: 214 VARAALSLAYPLLDIVLVSMVLALHFRRVSINRSAVNTAIAGLALTVLCDALFTAPLLRS 273

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
               G +  +G    ++L   + +        A           +  I            
Sbjct: 274 SYHSGQLLDAGWFAGSLLLAYAPWGARRGQDNAVEAPGPEPRAVSRPIAGSLAA------ 327

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L P           L+  +  R  + ++   L G  V++ +++   ++  +L     +Q
Sbjct: 328 -LTPYLAAAVCTLGILYNVVEGRRVDRVVV--LTGCAVVLALVLRQAIM--LLDNIALNQ 382

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +          V GS D++   +        +P  A + G  +  + G   +    IH 
Sbjct: 383 ELAEKESHFRSLVQGSSDVIMIAEPSGVLRYVSPAAAGVYGRDAEDLVGTALS--SLIHP 440

Query: 459 NDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +D       L  F+          + E R  +    +  +   +             +  
Sbjct: 441 DDLGGVVHELRRFLAAPAREEPTTRIECRFGSGTGDWLHVESTVNRHQG------GLLLN 494

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +    V+ ID+D 
Sbjct: 495 SRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTTRVGQALG-GRRAGDPGTAVLFIDLDG 553

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD--- 632
           +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ +    + A    
Sbjct: 554 FKAVNDSVGHQAGDELLVQAARRLQESVRTSDTAARLGGDEFAALIVGDGTRDQAAREYQ 613

Query: 633 ---FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +R  ++ P  +   E+ V ASIG A +    IT  ++++NA+LAMY AK  G 
Sbjct: 614 VHEIADRLRLRLSQPYRIGTGEVRVAASIGVA-FAEPSITPKDLMRNADLAMYRAKANGK 672

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             VE +             +   L  A+ + E  L++ P++ L    +  + A  +W   
Sbjct: 673 GRVELYAPQMQADVVRRSELAARLRTALRDGEFALLHQPVVHLASGTVAAVAAQARWRSA 732

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +    + +EF+ ++E+     A+  ++LE             +  P+ + + +++  LLD
Sbjct: 733 QGILFTPAEFLRVSEDSERAAALGTWLLEEAVEQAADRYRAGH--PVSVSVRVSAARLLD 790

Query: 808 NELCE-GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             L    ++AL+++       + +   ++    + +     L  LR++G+ + LD FG+ 
Sbjct: 791 RALPPGSVEALLTRHGLPSGALMIEVGDNDPRISFDELEQRLVALRRLGVRIALDGFGSG 850

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + ++ L  +P D +K +  L+ G  E      I   ++ +A ++    +A  +     +
Sbjct: 851 YAAVNALRRLPIDVLKLDRCLVEGVVESARLHKITSGLLRIAGDLGMQSVADGVDVPEQV 910

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPL 959
           + L  MGC + Q    A PL    + + L++ ++P+
Sbjct: 911 RALRAMGCTHGQGMAFAGPLDEYRLRRTLIRGKYPV 946


>gi|221126307|ref|XP_002165456.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 487

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 216/413 (52%), Gaps = 6/413 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+       +   AF D LTG+PNR  F+D +   +  +  +   +  +  ID+D++K +
Sbjct: 62  TQLGNKNAQLQQMAFYDQLTGLPNRSLFIDLVQREMLSAQRNQQ-QFGIFFIDLDRFKAV 120

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G A GD +L+ + RR+ E+L+  D++ R SG+ F +++    +   + + A  + +
Sbjct: 121 NDSMGHAAGDALLIEVARRLREVLREVDVVCRQSGDEFLVLVRDIEHWESLGEMAQRVLR 180

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           SI  P+ L    + V+ASIG + +         ++K+A++A+Y AK  G      F    
Sbjct: 181 SIEAPVVLANAPVKVSASIGISLYPEDGQDFETLVKHADIAVYQAKTLGRARYSYFHSEL 240

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S     + ++++L  A+ + +L L Y P +     E+V +EAL++W HP  G +  ++F
Sbjct: 241 NSRLQANLELEQELAYAIGHDQLVLHYQPQVCAKTGEMVAVEALVRWQHPTRGLLYPAQF 300

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE   I  + ++ L    R +  W  +       + +N+++ +  D+ L + +QA 
Sbjct: 301 IGLAEESGRIAEMGVWTLREACRQLADWSARGIHIG-NMAVNVSALEFRDHRLLDSLQAA 359

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P R+++  +ESV+M   E S+ ++ RLR+IG+ + +DDFGT  S L+YL  + 
Sbjct: 360 LDASGIPPQRLEIEITESVLMAETETSQRIIERLRQIGVGIAIDDFGTGYSSLAYLKRLR 419

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            + +K + S +    +     AI++ ++ +A+ +   ++A+ +  E       
Sbjct: 420 PNQLKIDRSFVNDTATDSDSRAIVKGVVGLAEALSLNVVAEGVETEEQRAFCR 472


>gi|296159129|ref|ZP_06841956.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295890690|gb|EFG70481.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 785

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 210/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LTG+ NR + L  L   +   A     R  ++ ID+D +K +ND LG 
Sbjct: 328 EREMTHLVEYDLLTGLRNRYATLQSLRHDVAQPANLG--RLAILFIDLDNFKTVNDTLGH 385

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL     R+   +     L+R+ G+ F +++  ++   +    A A  ++ A P 
Sbjct: 386 NAGDIVLQMTASRLAIAVADGGALSRIGGDEFVVVIKGDDVEKRAVTLAEAAAEAFAKPF 445

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +      + ASIG A  + +  +  ++LK A+LAMY AK  G N  + +          
Sbjct: 446 EVRGSSFVLHASIGIALHSVANESEIDLLKKADLAMYSAKDAGKNCYQFYSPQLSHRADH 505

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ L +A+   +L+L Y P I L    I G EAL++W+HP+ G I ++EF+ +AE 
Sbjct: 506 LMKWEQQLRVALAEGQLFLAYQPKIDLTRRCITGFEALVRWNHPQHGLIPANEFIPVAES 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  F++E   R +  W+ Q     + + +NI++      +L E +   I ++  
Sbjct: 566 TGLIVPIGDFVIETACRQLALWQQQGYDT-LSLAVNISAVQFWRGDLYETISHAIEESGI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S  R++L  +E+ +M  PE     +  L+++G+ + LDDFGT  S LSYL     DT+K 
Sbjct: 625 SARRLELEITETAMMEYPELVSEKIFALKRLGVRIALDDFGTGYSSLSYLNRFSVDTLKV 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      R    ++ +I+ +A+++  T++ +    E  I  L  +G    Q    +
Sbjct: 685 DRSFIQAIPGDRSVCVMVTAIVNLARSLGLTVVVEGTETEEQIAWLAALGHIEAQGFLFS 744

Query: 942 SPLGFNSILKLLKE 955
            P+  ++I  LL+ 
Sbjct: 745 RPVPVDAIPALLER 758


>gi|239996980|ref|ZP_04717504.1| GGDEF/EAL domain protein [Alteromonas macleodii ATCC 27126]
          Length = 814

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 220/436 (50%), Gaps = 6/436 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D LTG+PNR     ++   L  S  DD L   +M +D+D +KK+ND  G
Sbjct: 371 NTAKLEKMAMFDVLTGLPNRNMLTFQIEKQLAGSIRDDRL-VALMFMDLDDFKKVNDSHG 429

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L +   RI + ++  DI +R  G+ F I+L +  +   +   A  + +    P
Sbjct: 430 HDVGDKLLKAAAMRISKPIRESDIASRFGGDEFVILLSNIESKKHVDTVAKKLIEEFKEP 489

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           I +      V+ SIG A    S+ T  E+L++A++AMY AK + G     +   ++    
Sbjct: 490 IIVDGVTFYVSISIGIAITNHSRATPVELLRHADIAMYEAKAKKGAEYRVYDATMNLKVM 549

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +V ++ +   A+ +++  L   P I +    +VG EAL++W HPK GNIS ++F+ + E
Sbjct: 550 QKVELESEAREALRDNQFSLALQPQIEMHTGRLVGFEALLRWQHPKKGNISPADFIPLLE 609

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               +  ++ +++ R    +I     +  P + + IN+++   LD  L E +Q  I K  
Sbjct: 610 NTSFMLELDYWVITRS-TYLIRELKNSGYPDVKMAINLSAGQFLDPSLPEFLQQQIIKND 668

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P ++ L  +E+V++ + +R+  ++  +R +G  L +DDFGT  S LSYL  +P D +K
Sbjct: 669 IAPDQVCLELTETVLVSDIKRATTIMQNIRDMGCMLAIDDFGTGYSSLSYLKSLPADYIK 728

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +     +     I+ S I M +N+   ++A+ I      + L    C+  Q   +
Sbjct: 729 IDRSFVANIASSADDRNIVHSTISMVRNMGMQVVAEGIETSEQYELLCHFDCNLGQGYLI 788

Query: 941 ASPLGFNSILKLLKER 956
           + P+   +I  +L ++
Sbjct: 789 SRPIPEVNIWDVLSDK 804


>gi|121533302|ref|ZP_01665130.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thermosinus
           carboxydivorans Nor1]
 gi|121307861|gb|EAX48775.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thermosinus
           carboxydivorans Nor1]
          Length = 728

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 223/440 (50%), Gaps = 12/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++++ E     A+ D LTG+PNR    +RL  + + ++        +M +DID +K +N
Sbjct: 292 QRRQAEEKATFLAYYDQLTGLPNRHLLQERLRELEEAAS-----CVALMAVDIDGFKLVN 346

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +V G A GD ++ ++  R+  +     ++A L  ++F I+L+  +    +   A  +  +
Sbjct: 347 NVAGHAAGDKLIRAVGERLSAVAGPEALVAALGADKFAILLM-CDGRETVERVANGILTA 405

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
              P  +  +E  +TASIG A +  +  + +E+ KNAE A+  AK  G NH   +   V+
Sbjct: 406 CRSPWLVEGQEFFLTASIGIALYPDNAASVAEVFKNAEAAVASAKADGKNHYAFYTAAVA 465

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              + ++ ++ +L  A+E  E  L Y P   +    I G+EAL++W HP+ G      F+
Sbjct: 466 EQAAAKIALERELRQALEKGEFVLYYQPRWEIASGRIAGVEALVRWLHPRRGLTLPGAFI 525

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  ++L    R + +W+ +     I +  N+A+  L   +  + +  ++
Sbjct: 526 ALAEETGLIIPLGTWVLTEACRQLGAWQAEGIE--INVSANLAASQLYQADFSDDVLEIV 583

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +   P R++L  +ES+ M + E++  ++ RL++ GI   +DDFG   + L  L  +P 
Sbjct: 584 LSSGIDPVRLELEITESMCMHDIEQAVSVINRLKRAGIKFAMDDFGAGQTSLFSLKRLPL 643

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +    ++ +  AI+R I  +A +    ++A+ +     +  L + GCD  Q
Sbjct: 644 DVLKIDKSFVKDAETSRESAAIIRMITSLAHDFGIKVVAEGVETAAQLDFLRQFGCDEAQ 703

Query: 937 DSHVASPLGFNSILKLLKER 956
              ++ P+    I  +LK++
Sbjct: 704 GYLLSPPVPPEKIRGMLKQQ 723


>gi|209544028|ref|YP_002276257.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531705|gb|ACI51642.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 673

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 128/596 (21%), Positives = 257/596 (43%), Gaps = 50/596 (8%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            G +L  +     V+Q V A G  +QG           +    D +  +      +    
Sbjct: 113 IGAILADMPAAVVVVQDVSAAGGPAQGADPA---LRPVLDRIPDGIALFGADCGLLYRND 169

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
              + L L    +    +                 + + +             R AD   
Sbjct: 170 LFGSTLALPDDLLWPGTQA--------------RAIMAVLSGDTA--------RTADGAC 207

Query: 493 HW---MIIRIRPMSN-----SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            W   ++ + R +        +G   R + +  D+T+ ++S          D++TG+ N 
Sbjct: 208 DWTTEILRQGRSLRLSWTGLPDG---RRLLLCRDLTDLRRSESRARFLEQHDDVTGLANL 264

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                 L  + +      + R TV+  D+  +K+IN+ +G A GD++L  +  R+  L++
Sbjct: 265 PGLQTHLQMLCER----PSERFTVLYFDLFGFKRINNTMGHAAGDELLRLVADRVRRLME 320

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D+ A + GN+F +++ +E +S  I   A  +R  ++ P+++L  ++TV   IG   + 
Sbjct: 321 PDDVAAHIRGNKFALVMRAEQDSDMIWAHAQHLRSVLSRPMSVLGHDVTVGVGIGVVRFP 380

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
           +       ++ NA++A+ +AK   G  +  +     R  +    ++ DL  A+   E  L
Sbjct: 381 ADGSDRDTLMWNADIALQYAKDGKGEGIRFYNPVMDRMRQKRMDLERDLQRALAQDEFVL 440

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P + +    IVG+EALI+W HP  G I   +F+ +AE + ++  I ++ L    R  
Sbjct: 441 FYQPFLNIGTHRIVGVEALIRWMHPVRGLIPPGDFIPVAEGMGLMYDIGVWTLNTACRQA 500

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W +      I + +N+++     + L E +   +  +     R++L  +E+ ++ +  
Sbjct: 501 SAWPE-----DIVVSVNVSAAQFRHDGLVETVAQALLGSGLDAGRLELEITETAMIDDVP 555

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAIL 899
           R+  +L +LR++G+ + LDDFGT  S LS+L  +PF  +K + S +    +      AI+
Sbjct: 556 RAARVLRQLREMGVKIALDDFGTGYSSLSFLQSLPFTRIKIDRSFVRELGQGVGDGAAIV 615

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +I  +  ++     A+ +  +     L ++ C  IQ   +  P   + I  LL +
Sbjct: 616 GAITSLCGSLNVVATAEGVETQEQFDYLKQINCSEIQGFFICRPRPASEIQPLLDQ 671


>gi|89900613|ref|YP_523084.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89345350|gb|ABD69553.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 879

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 213/435 (48%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  +  E +    + D LTG+ NR  FL+R+   +  +    + +  + +ID++++K IN
Sbjct: 438 DHIEKQERLNYLVYYDVLTGLANRSLFLERVAQAMRSAVRSGD-KLALFLIDLERFKNIN 496

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L  +   +   +   ++LAR+  + F ++L       ++A     +  +
Sbjct: 497 DSLGRPAGDTLLRLVAEWLTSKVGDANLLARVGADLFAVVLPEVKQDGEVARALDQLMAA 556

Query: 641 -IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
            +  P  L +    ++A +G A +      S  + KNAE A+  AK  G      + +++
Sbjct: 557 FLEHPFRLNDAVFRISAKVGIALFPYDGADSDTLFKNAESALNKAKTSGERYLFYTQKMT 616

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              + ++ ++  L  A++  E  L Y P + L   ++   EALI+W+ P+ G +    F+
Sbjct: 617 DMAAGKLTLENQLRQALDKGEFVLHYQPKVNLASGKMTSAEALIRWNDPRTGLVPPGRFI 676

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I EE  +I  +  + L +  +D + WR       + I +N++   L      + ++  I
Sbjct: 677 PILEETGLIHEVGRWALRQAIKDALRWRSAGLA-AVRIAVNVSPLQLRHRGFIDEIRQAI 735

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S   ++ + ++L  +ES++M N + S   L  +R +G++L +DDFGT  S LSYL  +P 
Sbjct: 736 SIDAHAAAGLELEITESLLMENVQHSITSLHAIRDMGVTLAIDDFGTGFSSLSYLSKLPV 795

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +   T   + +A++ +II +A  ++  ++A+ +  E   + L  + CD IQ
Sbjct: 796 DTLKIDRSFVIEMTDAPESLALVSTIISLAHALKLKVVAEGVETEEQSRLLQVLNCDEIQ 855

Query: 937 DSHVASPLGFNSILK 951
               + P+  +    
Sbjct: 856 GFLFSKPVPSDIFEA 870



 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 7/218 (3%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            ++ +  A L IP  ++         +A  K   +D +  + +  L    +       Q 
Sbjct: 68  ALEIFRSAGLDIPFILISGTIGEATAVAAMKAGASDYMMKSSLARLAP-ALERELKEAQI 126

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGP 448
             A       +    ER         D+ +  D+     +  +P    I G +S S++  
Sbjct: 127 RAANQRAQAALIDSEERFRQMAENIRDVFFLADVEDERILYVSPAYEEIWGRSSESLYAN 186

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            ++W   +H +DR +        V    G+ ++EFR+   D+   W+ +R  P+ +    
Sbjct: 187 PQSWTEAVHPDDRASAYEKYGQIVS--AGKTEFEFRMVRPDDSIRWIKVRGFPVRDDADK 244

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
           I+R  GIA D+T+QK   E I     QD +T + NR  
Sbjct: 245 IVRIAGIATDVTDQKTDAEKIKTA--QDRITHL-NRVY 279


>gi|126666016|ref|ZP_01736996.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Marinobacter sp. ELB17]
 gi|126629338|gb|EAZ99955.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Marinobacter sp. ELB17]
          Length = 1133

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/604 (19%), Positives = 228/604 (37%), Gaps = 19/604 (3%)

Query: 356  MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
            +      D                 +    VI+ +       + +    E   + +    
Sbjct: 531  LIARGADDQPFYIEVTTAASPTEAGVQYSAVIRDISERKRIEEQLHRHSELAQVTLEAIT 590

Query: 416  DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVG 473
            + V  +D     V   P  A + G +S    G     +  +     D      +      
Sbjct: 591  EGVITFDAQMHTVYLNPIAAALTGWSSQQAFGKPAEHILCLKSIEGDNMAVLPLFQQQKK 650

Query: 474  YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 +           +F  + +   P+ N  G+ + ++ +  D+T  K   + +   A
Sbjct: 651  QCLQLI-------KKGGKFSDIELTPAPLHNHAGEPVGWVVVMQDVTNSKLLQQQLSFQA 703

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
              D LTG+ NR+ F   L +++     + +    +  +D+D++K +ND  G   GD++L 
Sbjct: 704  IHDPLTGLINRREFERSLQSLIQDVEHNASEHL-LCYLDLDQFKIVNDTCGHQAGDELLK 762

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
             L   +  LL+  DILARL G+ FG++L     +                  +   +   
Sbjct: 763  QLANTLKPLLRQSDILARLGGDEFGVLLSHCPLNQGQEIAEQLREAVCGFHFSWDGQVFA 822

Query: 654  VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKE 709
            V  SIG    T        ML  A+ A Y AK+ G N V      S     ++D+V    
Sbjct: 823  VGVSIGIVHLTQPCGDLGIMLSKADTACYLAKNLGRNRVHLHLPDSSEVKLQTDQVQWVN 882

Query: 710  DLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +  A+      L   PI+     D +    E L++    +   +    F+  AE   ++
Sbjct: 883  RIRQALNEDHFRLFCQPIMALDQADADPTHYEILLRLKDARGHMVPPGAFLPSAERFNLM 942

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              I+L+++      +   + + +   +   IN++   +   E  + ++  ++K      R
Sbjct: 943  PQIDLWVIRNTLAWMGG-QLRGSHLDLHCAINLSGASIGHPECLQTIREQLTKHRVPAHR 1001

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            +    +E+  M + ++++  +G LR +G    LDDFG+  S   YL ++  D +K +G  
Sbjct: 1002 VCFEITETTAMADLKKAQDFIGELRTLGCKFALDDFGSGLSSFGYLRHLSVDYLKIDGIF 1061

Query: 888  MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +     +    AI+ SI  +   +    +A+ +      + L ++G DY Q  H+  P  
Sbjct: 1062 IRELAQSPIDRAIVDSINTIGHIMGLKTVAEFVEDGATHEILHQLGVDYAQGYHLGRPQP 1121

Query: 946  FNSI 949
              S+
Sbjct: 1122 LESL 1125



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 104/356 (29%), Gaps = 34/356 (9%)

Query: 203 AIFLTIFYMVNRSSM-LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL 261
            +  T+        + L+ ++ ++           G L+ LV + +G   +    + +  
Sbjct: 233 IMVNTLMAAATGGMVALLISYCLSGRHRVTTMTINGTLAGLVAITAGVHSVSTLAAMVIG 292

Query: 262 SSSLIIFLFMY-----LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316
           +   +  L           +     V     +GI     +        +    ++     
Sbjct: 293 ALGCLCMLAAEQLLLKFELDDPVGAVPVHLVAGIWGTLAVAFFGRAEQLQ-TGLSFSGQL 351

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL--WMAITKRLDNDIIQPALVGG 374
              L+    I           + L+   + + +   G    + +++      +   L   
Sbjct: 352 QAQLFGIVAIGLFSFSLALVFLWLLKQLMPLRVSAEGERDGLNVSEHGARTELVDLLQAM 411

Query: 375 L-------------VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
                               +G    Q+       +Q I     R  L V    D V  +
Sbjct: 412 AGQEKSGDLQHKVHAEPFTEVGLIAAQYNRVMARLNQVIT----RTRLIVRDIRDGVITF 467

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ- 480
           +      +  P    +   +   + G     L  +H N+   +       V  R    + 
Sbjct: 468 NSKGIISSVNPGAEHLFARSRAQLIGQSTALL--LHRNNSALYTHANPEQVFPRLAASEN 525

Query: 481 ---YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              +E   R AD+Q  ++ +         G  ++Y  +  DI+E+K+  E +  ++
Sbjct: 526 VGPHELIARGADDQPFYIEVTTAASPTEAG--VQYSAVIRDISERKRIEEQLHRHS 579


>gi|331698885|ref|YP_004335124.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953574|gb|AEA27271.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia dioxanivorans CB1190]
          Length = 925

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 139/593 (23%), Positives = 259/593 (43%), Gaps = 26/593 (4%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           G  V +V  +     Q +    + + G      R +  V      V  +D     +   P
Sbjct: 337 GTPVRLVGTVRDLSAQRLAENRHRAAGA-----RFADLVALLPTGVLLFDATGRVIDANP 391

Query: 433 DIATILGLASGSMHGPIRNWLPY----IHINDRDNFRTILDSFVGYRRGRLQYE-FRVRA 487
            +  IL      + G     L      +  +   ++   L           + +   +  
Sbjct: 392 AVCEILDTVPEDLRGTTAAALSAEPEPLSPDGLPDW---LRRVPPGVDNGYRLDALPLLR 448

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           +D    W  + +      +G  L  + +  D+T+++++ E +      D LT +PNR + 
Sbjct: 449 SDGTRVWCGVGVTVTRADDGAPLFLV-VCEDVTDRRRAAEVLRSAGTVDALTRLPNRAAA 507

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L  +  +L     D      ++  D+D + ++N  LG   GDD+LV+L  R+   L F  
Sbjct: 508 LHLVDGLLAGPGRDG---VVLVCGDLDDFSRVNSSLGHDAGDDLLVTLAGRLQRELPFGC 564

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS-WTSS 666
             ARLSG+ F +I      +      A  +   +   I +  R + VTAS+G A+     
Sbjct: 565 TAARLSGDEFVVICSDHTEAGGPEALAHTVAALLRTSITVGGRPVEVTASVGLATPAPDP 624

Query: 667 KITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
            + ++++L+ AE+AMY AK R  GG  V +  V    + ++ ++ +L  A+ +  L L Y
Sbjct: 625 DLRAADLLRFAEVAMYEAKKRSRGGVGVATDVVVRTATSQLGLEAELRAAIADDRLVLEY 684

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++   D  +   EALI+W HP  G +   EF+ +A+   +++ ++L++L   AR+   
Sbjct: 685 QPVV-TADGRVRSAEALIRWPHPDRGLVPPGEFLPVAQRGGLMRELDLWVLRTAAREAAG 743

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W+ +     I + +N+A     D E  E +   +  T    SR+ L   E+ ++  P  +
Sbjct: 744 WQSEG---EIAVAVNLAGLLPGDPEFAELVTGTLQATGLDHSRLILELVETSLVALPPHA 800

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSI 902
              +  L   G+   +DDFGT  S L+ L  +P  TVK + + +TG  E     A+ R++
Sbjct: 801 LAAMADLVGRGVRFAVDDFGTGYSSLARLKELPAQTVKVDRAFVTGIAEDPVDHAVARAV 860

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + MA+ +  + +A+ +      + L  +G D  Q    A PL    + ++L+ 
Sbjct: 861 VDMARAMGRSTVAEGVETAAQFEALRGIGVDAFQGWLFARPLPVEQMREVLRS 913



 Score = 44.2 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 16/132 (12%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL---GLASGSMHGPIRNWLPYIHI 458
           SD  R +     +    W +++    +  +  +  +    G+      GPI         
Sbjct: 242 SDARRIAELERMARVGTWTYELASATLRRSASLQDLYRGAGIDPDGPDGPIEG------- 294

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +    +        RG    +  V         +  R       +G  +R +G   D
Sbjct: 295 ---EQVALLCQGLRNGVRG---GDHHVDLKLPGDRLLGCRASVERADDGTPVRLVGTVRD 348

Query: 519 ITEQKKSLEGIL 530
           ++ Q+ +     
Sbjct: 349 LSAQRLAENRHR 360


>gi|170739673|ref|YP_001768328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168193947|gb|ACA15894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 1055

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 136/610 (22%), Positives = 245/610 (40%), Gaps = 37/610 (6%)

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
           L       +  +     A+ L  A            + +     +  + PAL        
Sbjct: 347 LIILALTGFAILASTVLALRLAAAVTGPLARLTQGVLDVRPESMDVAVDPALGARADEFG 406

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDG-------ERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           IL                Q + +         ER   AV      +  +D     +    
Sbjct: 407 ILARSFDTMLREVRQARQQLLAASEAEIRLQFERLDAAVANMSQGLCMFDAGGRLIIANE 466

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNF-------RTILDSFVGYRRGRLQYEFRV 485
               + G A   +       L  +                   +    +R G  Q   R+
Sbjct: 467 RYRAMYGHAPDEV--RPGTSLTALLKARIARGCQLKAGQLDAAEWLAAHRTG--QAHVRI 522

Query: 486 -RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              AD     + + ++P+ +        +    DITE++++ E I   A+ D LTG+PNR
Sbjct: 523 DELADG--RAIAVSLQPLPDG-----GCVVTHEDITERRRAEERIAFLAYHDVLTGLPNR 575

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F   L   LD           V+ +D+D +K +ND LG  VGD +L ++  RI   L+
Sbjct: 576 ARFTAALVAALD--GRGAQAAIAVLYLDLDHFKAVNDTLGHPVGDALLQAVAGRIQSCLR 633

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D++ARL G+ F I+ +  +     +D A  +   +  P  L+   + V  S+G A   
Sbjct: 634 PQDLVARLGGDEFAIVQVGPDQPAGASDLAGRLIAEVGRPYALMGHHVVVDTSVGIALAP 693

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYL 722
           +       ++K A++A+Y AK  G      F  +      +R  ++ DL  AV     +L
Sbjct: 694 ADGTAPDRLMKCADMALYRAKGDGRGAYRFFEPAMGAQMEERRALEIDLRQAVRERAFHL 753

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P++ L    + G EAL++W HP  G +    F+ + EEL +I+ +  ++LE   RD 
Sbjct: 754 HYQPLLNLRTNRVSGFEALLRWTHPHRGPVPPDGFVPLLEELGLIREVGAWVLETACRDA 813

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W        + + +N+++    +  +     A +  +   P R++L  +E+V++ + +
Sbjct: 814 AGWP-----TDVKVAVNLSALQFRERAVVRDAAAALEASGLPPGRLELEITETVLLQDTD 868

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILR 900
            +   L  LR+ G+ +++DDFGT  S LSYL   PFD +K +   +          AI+R
Sbjct: 869 ETLATLHALRESGLRISMDDFGTGYSSLSYLRRFPFDKIKIDRFFVQDLETKADSAAIVR 928

Query: 901 SIIPMAKNIE 910
           ++  ++  + 
Sbjct: 929 AVTGLSHALG 938


>gi|114048973|ref|YP_739523.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-7]
 gi|113890415|gb|ABI44466.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. MR-7]
          Length = 572

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 212/437 (48%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +   ++    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLMNRYGFELCLNRAIARAKRSNDF-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+  +L+  D++ARL G+ F +++   +        A  + K+
Sbjct: 187 DTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANRLLKA 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEEVFGLGDNDVMIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A + +EL + Y   +     +I+G+EALI+W HP+ G IS  +F+
Sbjct: 307 REVRYRNHIESSLRMAQKQNELKVYYQAQVDSKTHQIIGMEALIRWLHPQDGLISPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ +++ I  ++L    R    W  Q         + +N+++  +   +L E +  
Sbjct: 367 PIAEEIGLMEEIGDWILLEACRQAQQWLKQLAPTGHSFTMAVNLSASQIGHIDLYEKIVK 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T  SP  ++L  +E+ ++  P     +L ++ ++G+   LDDFGT  S L ++   
Sbjct: 427 MLAETGLSPKALELEITENCLIEEPHEHAKVLDKIAQLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ I      +  T   CD 
Sbjct: 487 PISVLKIDKSFIASYDKDEKDARLLTALLNFAYGFNVISVAEGIETVEQAEFCTERHCDV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + P+  +    
Sbjct: 547 LQGYLFSRPIEASEFEA 563


>gi|329913210|ref|ZP_08275906.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545406|gb|EGF30622.1| hypothetical protein IMCC9480_1122 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 942

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 114/578 (19%), Positives = 228/578 (39%), Gaps = 20/578 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  +          FS+ E   + +    D V   D   +          +LG    
Sbjct: 344 VGTLTDISDLKAAEANAFSEKELAQVTLAAIADAVITTDTDGNITYCNRVAEDLLGEPVT 403

Query: 444 SMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRP 501
           ++          I           ++   +         +  +    D +   +   + P
Sbjct: 404 ALRNRALAVACCIVSETSGLQISDLVGPAIRGGDTPGSVDTLLLHKQDGRIVPIDCSVAP 463

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + N  G I+  + + +D++++++    +   A  D LTG+ NR++F  RL  ++  +A+ 
Sbjct: 464 IHNFAGAIIGAVVVLHDVSDERRHAAELSHQANHDALTGVLNRRAFEARLNALISDTASQ 523

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 V+ +D+D++K +ND  G A GD+++  ++  + + ++  D+LARL G+ FGI+L
Sbjct: 524 RQ--YAVLYLDLDQFKVVNDTCGHAAGDELICQISMILQQSIREGDLLARLGGDEFGIVL 581

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +   +S  +           A+      +  TV  S+G  +      T  E++K+A+ A 
Sbjct: 582 LDCGDSDAMRIAEQLRESVAAIRFIWGGQRFTVGVSVGMVALARGGSTLKEVMKSADAAC 641

Query: 682 YHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE--- 734
           Y AK +G N V  +R        R   +     +  A+E     L   PI+ L       
Sbjct: 642 YMAKEKGRNRVHVYRTDDIELTVRHHEMTWVARIRNALERDRFCLYAQPIVSLRTTAGDD 701

Query: 735 ---IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
                 +E L++        I+   F+  AE   ++  I+ +++    R +        +
Sbjct: 702 DLPYAHVEILLRLLDDDDRLIAPMAFIPAAERYGLMSQIDRWVIRHTFRMLA----LPGI 757

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
                 IN++   + D+     +           S +    +E+  + N  ++  L+ RL
Sbjct: 758 GITTCAINLSGGSVGDDHFFAYLLEQQRLHHVPWSMLCFEITETAAIANLAKAATLITRL 817

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R++G    LDDFG   S  SYL ++P D +K +GS +         +A++ +I  +   +
Sbjct: 818 RELGCRFALDDFGAGMSSFSYLKHLPVDYLKIDGSFVKDMLTDPTDLAMVEAINNIGHVM 877

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               IA+ +  +     L  MG +Y Q   +  P    
Sbjct: 878 GKQTIAEFVENDAIRARLRTMGVNYAQGYGIGKPEPAA 915



 Score =  140 bits (352), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 1/177 (0%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                +    RL  +++        +L++      +      +      +    ER SL 
Sbjct: 183 GFSSALGDASRLIRNLLVLGFGSVALLLIATSIVLMRLVARRSERLESQLRHSEERLSLG 242

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
             GS   +WDWDI  D V  +P I+ +LG     ++     ++  +H +DR   R     
Sbjct: 243 FTGSSAGLWDWDIRADTVYYSPWISQLLGYQDDVLNDVPSAFMELMHPDDRAGCRAAAAL 302

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                      EFR++  D  + W   R + + +  G  +R +G   DI++ K +  
Sbjct: 303 HFR-SSTPYDIEFRLKTGDGDYLWCRSRAQVVRDEQGTPVRMVGTLTDISDLKAAEA 358


>gi|254417148|ref|ZP_05030894.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176126|gb|EDX71144.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 560

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 110/428 (25%), Positives = 213/428 (49%), Gaps = 8/428 (1%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+    R    L+       L+  ++ ++I++  ++N+ LG+A+GD +L ++  R+ 
Sbjct: 135 LPNRRLLQKRFNQ-LEKPGNQGKLQIFLLSLEIEQLNQLNNTLGLAIGDQLLQAVVERLH 193

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             L   D +A++  + F I+L    +  +       + K+  +P  +   +I ++A IG 
Sbjct: 194 RQLGQQDAIAQIGSDHFIILLSRSYHKPESIQIVETLLKAFDLPFQVDSHKIFLSAYIGI 253

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS 718
           A           ++++A +A   AK  G    + +  S      +   ++  +  A+E  
Sbjct: 254 AILGRDGRDLDTLIRHASVAREEAKQPGNRRYQFYIASIGAKSQEAFELEIQMRQALERQ 313

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  L Y P + L+  +I G EAL++W+HP+ G IS  EF+ +AE+  +I  +  ++L + 
Sbjct: 314 EFQLYYQPKVNLLTGQIEGAEALVRWNHPQRGIISPVEFIPLAEKTGLIVPLGEWVLRQA 373

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                 W+DQ    P+ I +N++ +    + L   +  ++ +T  +P  ++L  +ES ++
Sbjct: 374 CHQARVWQDQGIY-PLRIAVNLSPRQFNQSNLTNFVVDILHETGLNPHYLELELTESTLV 432

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            NPE +   L   + +GI +++DDFGT  S LS L   PFD +K + S +   TE     
Sbjct: 433 QNPESAIATLQTFKALGIRISIDDFGTGYSALSQLKKFPFDVLKIDRSFVCQLTEDSRDE 492

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK-- 954
           AI  +I+ MA++++  ++A+ +     +  L    CD IQ    + PL   +   LL   
Sbjct: 493 AITTAILQMARSLKLKVVAEGVETLSQLNFLKGHQCDEIQGYWFSPPLSAEAFADLLSTG 552

Query: 955 ERFPLVKN 962
           ++FPL+ +
Sbjct: 553 KKFPLLSS 560


>gi|297202536|ref|ZP_06919933.1| phosphodiesterase [Streptomyces sviceus ATCC 29083]
 gi|197709936|gb|EDY53970.1| phosphodiesterase [Streptomyces sviceus ATCC 29083]
          Length = 761

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 219/440 (49%), Gaps = 8/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +    +         +D LTG+PNRQ  L+R+ + LD +    + R  +M+ID+D+++ +
Sbjct: 311 STLWMARARAEEQ-LRDPLTGLPNRQWLLERIWSALDDAER-IDARAALMLIDLDRFRSV 368

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+ +  R+   L      ARL G+ F ++L   +++      A  +  
Sbjct: 369 NDTLGHLAGDRLLLQIADRLRLALPRGAEAARLGGDEFAVLLPIADSTTSATRVARNLVA 428

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVS 698
           +++ P++L    + + AS G A +    + +  +L+ A++AMY AK  R G  V   +  
Sbjct: 429 ALSSPLDLDGLTLVLEASAGVAVFPDHAVDAEGLLRRADVAMYQAKRDRTGVEVYESKRD 488

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   DR+ +  DL  A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+
Sbjct: 489 SNTPDRLGLLGDLRRALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFI 547

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   ++  +  ++L+     +  WR Q    P  + +N++ +D+        + A +
Sbjct: 548 AIAESSGLMPYLTEYVLDTALAQVAEWRAQGLYVP--VAVNVSPRDVHTPGFAGSVAARL 605

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++       ++L  +E V++ +P R+   L  L   G+ ++LDDFGT  S L +L  +P 
Sbjct: 606 ARHGVPAGALQLEITEHVLLEDPSRAADTLAALTGHGVKMSLDDFGTGYSSLVHLRRLPV 665

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       +   I+R  + +A ++   ++A+ +  +   + L  MGCD +Q
Sbjct: 666 SELKIDRSFVAKLAVDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDMGCDAVQ 725

Query: 937 DSHVASPLGFNSILKLLKER 956
              VA+ +        L  R
Sbjct: 726 GWLVAAAMPPEETTAWLLAR 745


>gi|109900213|ref|YP_663468.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
 gi|109702494|gb|ABG42414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas atlantica T6c]
          Length = 918

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/589 (20%), Positives = 234/589 (39%), Gaps = 18/589 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           I+   +    V +VI++    +    A       + +   R          I W+ D   
Sbjct: 338 IVWGVVSAFFVALVIILLLVAVIRRNALVKRETELNAS--RYRDLADAGASIFWECDSDL 395

Query: 426 DRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           +    + D+A++       + G      L  I I D    R      +  +     +  +
Sbjct: 396 NYTHLSGDVASLFDYKPEELIGLPHLEILKNIDITDFPTVR--YKQRISRKESLSNFILK 453

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            +    +   ++I  +P+       L Y GI  DIT++    + +   A  D LTG+ NR
Sbjct: 454 AKKHTGEQLVLLINAKPIMEFENKFLGYRGILKDITKEHDLSQMVSYQANYDALTGLVNR 513

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F+  L         ++     +  ID+D +K +ND LG  +GD VL  +   +  L+ 
Sbjct: 514 RHFVSLLKRYFAE-KNNNVAPSYLCCIDVDNFKLVNDSLGHQIGDGVLTEVAEVLSHLVN 572

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D L RL G+ F ++L+  +     +     ++           R+I +  SIG  +  
Sbjct: 573 SNDTLGRLGGDEFALLLVDRSLEESTSLCKNLIQSVSEHAFYWGGRQINIGISIGMVTLE 632

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVES----FRVSSFRSDRVMIKEDLCLAVENSEL 720
                   +L  A L+   AK  G   +                +    ++   ++    
Sbjct: 633 RDLSDVE-LLSKAGLSRDKAKELGRGRLFFAEAGCTDMLRDQAHIGYIANISHDLKLGRF 691

Query: 721 YLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            LV  PI+  +  ++ I+  E LI++ +     +S   F+ +AE+  +I  I+ ++++  
Sbjct: 692 SLVKQPIVGLKNTNQHILHYEILIRYHNENGQFVSPGVFIPVAEKHGVISLIDSWVVKTT 751

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              + ++        + + IN++   + +++    +  LI  +  +P  I    +E+ V+
Sbjct: 752 ---LANYATYFPEGNVTVSINLSGVSVSNDDFSRQVINLIKTSRIAPQNICFEITETAVI 808

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896
               ++   +  L+ IG+   LDDFG+  S   YL  IP D +K +GSL+          
Sbjct: 809 SRIGQALDFIHELKAIGVKFALDDFGSGTSSFGYLKQIPVDYLKIDGSLVKDIHNQPTDR 868

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           AI+ S+  +AK +    +A+ +  +   + L  +G DY Q   +  P  
Sbjct: 869 AIVESVHNIAKMMGMKTVAEFVENDEICRVLQDIGIDYGQGYGLGKPQS 917


>gi|325275267|ref|ZP_08141224.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324099608|gb|EGB97497.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 754

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 222/442 (50%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E  ++   +   A  D LT + NR+ F       L      ++ R  VM +DID +K+
Sbjct: 276 LSELDQARASLQQAAHYDALTNLVNRRGFNQLFAERLAEHLASES-RLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +   I    +  D++AR  G+ F  ++ S N+  +    A  + 
Sbjct: 335 INDSLGHHAGDELLKVIANHIKAATRSQDLVARFGGDEF-CVVTSLNSRDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  PI L  R + +T SIG + +     ++ E+LK+A+LA+Y +K  G N +  F  S
Sbjct: 394 QRMKDPIELCGRRMVMTTSIGVSIFPDDGSSAEELLKHADLALYQSKDNGRNSLNFFNDS 453

Query: 699 ---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                     + +E     +E   L + Y PI       +  LEAL++W HP+ G +   
Sbjct: 454 LKARASIALQLEEELRLALLEERGLCVHYQPIFDQRTGRVAKLEALVRWQHPQHGLLGPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L++L     D+   +       + + +N ++  L  +EL   ++
Sbjct: 514 RFIGIAETNGLIVDLDLWVLRHACADLALLQR-GGHGDLKVTVNCSAVTLSHDELPNEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +     S  +++L  +E+ +MG+ +R+  LL R+R +G++L++DDFGT  S L+YL +
Sbjct: 573 KALFHAGVSAHQLELEVTENALMGDIQRTVNLLKRVRALGVALSIDDFGTGYSSLAYLKH 632

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + + G  +++K   I+++II MA  +   ++++ +  E     L    CD
Sbjct: 633 LPLDVLKIDRTFLQGVPASQKDREIVQAIIVMAHTLHLQVVSEGVETEEQRAFLADHACD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q   +  P+ +  +  +L  
Sbjct: 693 YLQGFLLGRPMPWAELQPMLDR 714


>gi|289768946|ref|ZP_06528324.1| phosphodiesterase [Streptomyces lividans TK24]
 gi|289699145|gb|EFD66574.1| phosphodiesterase [Streptomyces lividans TK24]
          Length = 758

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 217/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 318 LRDPLTGLPNRQWLLERTWTALDDAER-IGARAALMLIDLDRFRSVNDTLGHLAGDRLLL 376

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               R+ + L      ARL G+ F ++L   +++      A ++  +++ P++L    + 
Sbjct: 377 QTADRLRQALPRGAEAARLGGDEFAVLLPVADSTTSATRIARSLVGALSSPMDLDGLTLV 436

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 437 LEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 496

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 497 RALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 555

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 556 YVLETALGQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 613

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 614 TEHVLLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 673

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 674 IDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPEETT 733

Query: 951 KLLKER 956
             L  R
Sbjct: 734 AWLLAR 739


>gi|28871501|ref|NP_794120.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854752|gb|AAO57815.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 683

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  S     + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++ +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHHVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLTYLKQ 674


>gi|239626913|ref|ZP_04669944.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517059|gb|EEQ56925.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 552

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/553 (22%), Positives = 227/553 (41%), Gaps = 25/553 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +L    + D ++ WDI       + +    L ++       + +W   +   D + +  
Sbjct: 16  LNLLSETTDDYLYMWDIQNGTFYISDNAYEDLDISRLIEQDVVTSWSGIMVREDLEPWLN 75

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +       +     E+RV     +  W+  R     + +G  L  IG  ++I +Q K  
Sbjct: 76  DMQMIQDGIKDYHDMEYRVCNKSGRVIWVSCRGTVKKDGSGRPLFMIGRISNIGKQNK-- 133

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    DN+TG+ NR  F   +  ++    T+      ++V+DID +K +N+  G A
Sbjct: 134 --------FDNVTGLMNRSQFEQDIKALV---GTETAANGVIVVLDIDDFKNVNEKYGYA 182

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  L  L+  I  +L     L RL G+ F  ++        +      ++  I     
Sbjct: 183 FGDRALNLLSTLISAMLPKGCRLYRLDGDEFVFLVKDGT-RETVRGIYENIQMFIGSHFT 241

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +   +I ++ S G   +     T  ++ +NAE A+  AK  G N +  F    ++     
Sbjct: 242 VEGHQILISLSAGACFFPDDASTYQKLFRNAENAVEIAKMNGKNQLVFFSEEMYQQKLRN 301

Query: 707 IKED--LCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++    L   V++   +  L Y P +  +   + G EAL++W  P+ G +  SEF+ + E
Sbjct: 302 MELQESLHACVKDGFSQFELFYQPQVDAVTGAVTGAEALLRWHSPEHGEVPPSEFIPLLE 361

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++LE  AR    W          + +N++   L DN L E ++    +  
Sbjct: 362 ESRLITQVGAWVLEESARQFQIWSR--YKEDFSMSVNVSYIQLKDNALLEYLKD--GQWG 417

Query: 823 -YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                ++ L  +ES  + N          LR +G  + +DDFGT  S LS+L  +P + +
Sbjct: 418 DLPVGQMVLELTESCWVPNLHFLNQEFEELRGMGYGIAIDDFGTGYSSLSHLKELPANVL 477

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG          L  II +A +I   +  + +  E +   + +   DYIQ   
Sbjct: 478 KVDRSFVTGIHHGSYEYIFLEYIIKLAHSIGLKVCVEGVETEEEFDIVKQTLPDYIQGYL 537

Query: 940 VASPLGFNSILKL 952
              P+  +   KL
Sbjct: 538 FGRPVSASGFEKL 550


>gi|313497283|gb|ADR58649.1| Diguanylate cyclase/phosphodiesterase [Pseudomonas putida BIRD-1]
          Length = 683

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL       + R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQH-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 290 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P +L   +I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++LYLVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGM 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  +EL 
Sbjct: 470 VPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQ-GFSDLRMAVNLSTVQLHHSELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 QGCHEGQGYHYSKPLSARELTHFLKQ 674


>gi|253577254|ref|ZP_04854573.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843368|gb|EES71397.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 700

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 139/687 (20%), Positives = 278/687 (40%), Gaps = 45/687 (6%)

Query: 281 KVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLL 340
            +           AI       +    +     T     +     I+Y  + G    +  
Sbjct: 45  HLLAGLMCLAVSFAIFAQGWILFTDKLSKQRLYTAVLFSMIGILDILYTVLYGDISLLGF 104

Query: 341 -----IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
                +  W L+    +G +  +      D          + +  ++       VL    
Sbjct: 105 EPSGNLATWFLVISHLLGAFGMLRIFAATDQQVSGQQKVTMFVSAVLVTLAGLFVLNRYQ 164

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
                  + E   L +  +G  +    +    +               +M    R+ L  
Sbjct: 165 DRLPTLFETELLQLVL-QAGIPLLYLLVAAAVLYR-HRAER-----PPAMMTVTRSLL-- 215

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                   F  +    +    G ++    +  A  Q++  I     +         Y   
Sbjct: 216 --------FMAMGHVLLTCPPGHVEG---LTQAAGQWYMGISYYIVLKGV------YRLT 258

Query: 516 ANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             +    K  +E  +   A+ D+LTG+PN +   ++L  +L  +         V VI+ID
Sbjct: 259 IEEPLRGKLLVEAQMKHMAYHDDLTGLPNLRQMKEQLDELLGFTRA----CIGVAVINID 314

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG + GD VL  L  R+  L      + R+  + F ++     ++    D A
Sbjct: 315 RFKAINDSLGYSAGDKVLTELGSRLAVLEGPQQWVYRMGEDEFAVVFSELPDAAAAEDRA 374

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVE 693
             +  S+   + + + E  ++ S+G + + +   + +E+++ A++A++HAK +G      
Sbjct: 375 KQLLASVDPGVLIDDTEYHISLSMGLSVFPNDADSVNELIQFADMAVHHAKEQGVEFLRY 434

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +      +V ++ D+  A+E  E +L + P IRL   ++VG+EAL++W+HPK G I 
Sbjct: 435 HAAMKQRTQAKVELENDMRKALEREEFFLEFQPQIRLDTGKMVGMEALVRWNHPKRGLIP 494

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            SEF+ +AEE  +I  +  ++L+   +    W+      P+ + +N++ +      L E 
Sbjct: 495 PSEFIPLAEESGLIVPLGEWVLKTACQYNKKWQ-MDGFEPVCVSVNLSMRQFRQYNLAEH 553

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + A++ +    P  ++L  +ES+   + E +   L RL+++GI +++DDFGT  S L YL
Sbjct: 554 VNAILREVGLDPQYLELEVTESMTY-DIETALDQLHRLKRLGIHISIDDFGTGYSSLYYL 612

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + + +          AI+ +I  MA +++  + A+ +  E  ++ L R  
Sbjct: 613 KSLPIDRLKIDRAFVKEVMYDGNDAAIVSTITTMAHHLKLKVTAEGVENEEQLEFLKRQR 672

Query: 932 CDYIQDSHVASPLGF----NSILKLLK 954
           C   Q    + P+      +  L  L 
Sbjct: 673 CHEGQGYLFSKPVSAGVLESEFLSRLA 699


>gi|153000566|ref|YP_001366247.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|151365184|gb|ABS08184.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS185]
          Length = 749

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 130/591 (21%), Positives = 247/591 (41%), Gaps = 24/591 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATI- 437
           + +        LA+    +    + +R ++         +   +     +   P    I 
Sbjct: 165 LDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIV 224

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           L       +   + +L     N+       L           Q E      + +  ++ +
Sbjct: 225 LPQDIDIANFNPKMFLSASQPNELVGLFEHLAQ-----DKMWQGELVGLRGNGEEFYLDL 279

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +      NG    +  + +DI+E+KK+ + I   A  D+LTG+ NR +    + +++  
Sbjct: 280 IVTTFLEPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSLITS 339

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +       + M++D+D +K++ND  G   GD +LV + R+I E L    + ARL G+ F
Sbjct: 340 DSLTPG--FSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEF 397

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L    N  ++A  A  + K +A    L   + +  + SIG A +    +   ++L  
Sbjct: 398 ALLLPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNC 457

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY +K  G N    F      +      +   L  A++     L Y PI+      
Sbjct: 458 ADQAMYISKANGRNRYHFFTEQMQLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGL 517

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IV  E L++W H +   I   EF+ IAE   +I  I   +     + I+  +      PI
Sbjct: 518 IVRAEVLLRWQH-EGQFIPPDEFIPIAENSGLIVDIGRDVRLGAMQTILEMQAH--NWPI 574

Query: 795 FILINIASKDL----LDNELCEGMQAL---ISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            + +N+++ +     L +   +   A+   +  T +   R+ L  +ES++M        +
Sbjct: 575 NLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDV 634

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905
           L  LR  GI+++LDDFGT  S LSYL   P D +K + S +    E +   A++ +I+ +
Sbjct: 635 LNGLRIKGINISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRL 694

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  ++ T+ A+ +  E  +K +       IQ      P+   +   LL ++
Sbjct: 695 SHALDLTVTAEGVETESQLKFVMSNHIQEIQGYLFYKPMPKAAFFALLAKQ 745


>gi|224826046|ref|ZP_03699149.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
 gi|224601683|gb|EEG07863.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
          Length = 957

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 216/437 (49%), Gaps = 8/437 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   +   +  ++  D LT +PNR  F   L    D        R  V+ ID+D++K +
Sbjct: 506 SELDAANAQLEFDSLHDPLTKLPNRTYFARALRRSWDAYVNGSGERFAVLFIDLDRFKLV 565

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L     RI   L+  D +ARL G+ F  +L            A  +  
Sbjct: 566 NDTLGHLAGDHLLFEAGARIRSCLRHSDFVARLGGDEFAALLFGIEAPG-CEQTARMIVG 624

Query: 640 SIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               P+ L+ RE+  TAS+G      S    S ++L++A+ AMY  K +G +    F   
Sbjct: 625 EFDRPVVLMGREVFTTASVGVVIADKSYYQRSEDVLRDADHAMYRTKQQGRHGYTLFNHE 684

Query: 699 SFRSD--RVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +   ++ ++ +L  A+E + +L   + P I      + G EAL++W HP  G IS +
Sbjct: 685 LRLNQADQLALESELRRALEVDDQLTPFFQPFIDARSGALQGFEALVRWQHPTRGLISPA 744

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGM 814
            F+ +AEE  +I  ++ +M+E  AR +  W D+  +   + + IN++S +  D EL   M
Sbjct: 745 IFLPMAEESGLIMRVDRYMIEAAARQLRQWMDEGRLTDEVSLHINLSSANFHDPELLNWM 804

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           QALI +       + L  +ES ++  P+ +  ++  L  +G+ L LDDFGT  S LSYL 
Sbjct: 805 QALIRRYALPAGMLHLEVTESALIDVPDVAAEVIQGLHDMGVRLALDDFGTGYSALSYLH 864

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              FD +K + S +      ++  AI+R+I+ +A+ ++  ++A+ +   + ++ L  MGC
Sbjct: 865 RYHFDVLKIDQSFVADLDQKQESAAIVRAILALAEALDLDVVAEGVETGMQLRTLRDMGC 924

Query: 933 DYIQDSHVASPLGFNSI 949
             +Q  + A+P     I
Sbjct: 925 SKLQGFYFATPAPAARI 941


>gi|302554317|ref|ZP_07306659.1| phosphodiesterase [Streptomyces viridochromogenes DSM 40736]
 gi|302471935|gb|EFL35028.1| phosphodiesterase [Streptomyces viridochromogenes DSM 40736]
          Length = 767

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 220/426 (51%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R+ T LD +    + R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 322 LRDPLTGLPNRQWLLERIWTALDDAER-IDARAALMLIDLDRFRSVNDTLGHLAGDRLLL 380

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +  +++ P++L    + 
Sbjct: 381 QIADRLRVALPRGAEAARLGGDEFAVLLPVADSTTSATQVARTLVTALSSPLDLDGLTLV 440

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 441 LEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 500

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 501 RALDAHEVELHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 559

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 560 YVLETALGQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 617

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 618 TEHVLLEDPQRAADTLNGLTAHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 677

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +  +   
Sbjct: 678 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPDETT 737

Query: 951 KLLKER 956
             L+ R
Sbjct: 738 AWLRAR 743


>gi|95928346|ref|ZP_01311094.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135617|gb|EAT17268.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 764

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 222/437 (50%), Gaps = 7/437 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   IL  A  D LTG+PNR+   + ++  +       + R  V+ +D+D +K+IND 
Sbjct: 321 RRTQTQILFQATHDALTGLPNRRMVYEEISQTITECEVTRH-RFAVLFLDLDNFKRINDN 379

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A+GD+ L  + + + E  +   ++ R  G+ F +I     +   I      + ++  
Sbjct: 380 FGHAIGDEALKKMAQHLSENPQCH-LVGRQGGDEFIVITPQLADHRGIQQVVRNVLQAAQ 438

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             + +   EI +  SIG   +      +  +L+ A+LA+Y +K         +       
Sbjct: 439 KTLTIEHYEINLGTSIGVGVYPDDGDNAEALLRCADLALYKSKTVKRGEFLFYSAEMNEQ 498

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  +  +  L   +E  EL + Y P+ +   +++   EAL++W++P+ G +   EF+ +
Sbjct: 499 AQRRLLVENQLRKGLEREELTVYYQPLYQPQTDQVTCCEALLRWNNPELGPVRPDEFIEV 558

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I+A+  F+L R   DI     Q    P+ + +NI++K LL + + E +Q  +S 
Sbjct: 559 AEESGQIEALGQFVLNRALTDISQLNLQ-RHTPMQVAVNISAKQLLYSPIVEQLQQALSH 617

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S +K+  +ESV++ + E + ++L ++R++G+ + LDDFGT  S L+YL  +P + 
Sbjct: 618 QSLDASLLKIEITESVLIADFETAVMVLRQIRQLGVHVALDDFGTGYSSLAYLSRLPCEE 677

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +           +++SII MAK +   ++A+ +     +++LT  GCDYIQ  
Sbjct: 678 IKIDKEFVQNMLIHRDDENLVQSIIAMAKALNRRVVAEGVETLEHLEKLTLFGCDYIQGY 737

Query: 939 HVASPLGFNSILKLLKE 955
           +++ P+  ++  + L +
Sbjct: 738 YISPPVPLDAFSRFLDD 754


>gi|238764317|ref|ZP_04625268.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia kristensenii ATCC 33638]
 gi|238697468|gb|EEP90234.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia kristensenii ATCC 33638]
          Length = 614

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/581 (21%), Positives = 250/581 (43%), Gaps = 12/581 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                   T   ++ +          V  +  ++   D                G     
Sbjct: 40  GTASAYADTESVARDLVMSLSFAEQVVSEANSVIVILDKDGCVQRFNHLSEEYTGKKEQD 99

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G     L         + R  ++ F   R    + E  V     +  ++       S 
Sbjct: 100 IIGKNVYDLFMTVKEGASS-RKNIEGFF-QRGASYEVERWVNTVKGKRLFLFRNKFVHSG 157

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S  +    I    DIT+++++ E +   A  D +TG+PNR +  +R+ +++    T  + 
Sbjct: 158 SGKNERYLICSGTDITKERRAQERLRILANTDMITGLPNRHAIHERINSVI---QTRGDT 214

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +D+D +KK+ND  G   GD +L  ++  I   L   ++LARL G+ F +++ S 
Sbjct: 215 SVGIIYLDLDNFKKVNDHYGHMFGDRLLKDVSLAILSCLGDNEMLARLGGDEFIVLVESA 274

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +      +   + +P  +   E+    SIG A       T   ++++A+ AMY A
Sbjct: 275 T-MNLLETTTQRILNRMKLPFRVGLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTA 333

Query: 685 KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F     +   + V +  +L   +E  +L + Y P I     ++  +EAL+
Sbjct: 334 KEHGKQTYSIFSQQMNKKVSEYVWLDTNLRKGLEQHQLQVYYQPKISTKTGKVHSVEALV 393

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G IS  EF+  AEE  +IK +  ++L+   +  + WR +     + + +N+++
Sbjct: 394 RWLSPERGLISPLEFISYAEESGLIKPLGKWVLQTSMQQAVEWRKRG--VNLRVAVNVSA 451

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L+D+ +       +  +    S + +  +ES ++ N + +  ++ +LR +G+ + LDD
Sbjct: 452 RQLMDDTIVTSFIESLEASELESSLVDVELTESCLIDNEDAAINIMKQLRHLGVQIHLDD 511

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS L  IP D +K + S +          +++R+II +A+ +   +IA+ +  
Sbjct: 512 FGTGYSSLSQLARIPIDAIKLDQSFVRQIDTNPISQSLVRAIIVVAEALNMQVIAEGVET 571

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           + + + L  +G D  Q    A P+  + +   L  + P + 
Sbjct: 572 KEEEEFLDSIGIDEKQGFLYAKPMPADELEHWLVTKHPHLS 612


>gi|330991750|ref|ZP_08315700.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
 gi|329761218|gb|EGG77712.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
          Length = 745

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 215/441 (48%), Gaps = 9/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ ++ + I   +  D+LTG+ NR S  + +  ++       + + ++ ++DID+++ IN
Sbjct: 300 EQNETRQHIAQLSNFDSLTGLLNRTSLHNVIERLI---MRGGDSQFSLFMVDIDRFRDIN 356

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  L+ + RRI  L+    I++R  G+ F II+   +++ +   FA  +  +
Sbjct: 357 DALGHVNADRFLIEIGRRIRGLVNDEYIVSRSGGDEFIIIVPDCSHA-RAEQFAEKLINA 415

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVS 698
           IA P+ + E  +T++  +G +++  +   S  +L  A+ A   AK  G           +
Sbjct: 416 IARPLQVGENTLTISCCVGISTFPENGPDSESLLSLADAAARQAKGDGRGLYRFAGHEKN 475

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+M+   L  ++    L L Y P +  M   + G+EAL +W HP  GNI  S F+
Sbjct: 476 QVAQERLMLGSALRDSLSKGMLNLHYQPQVETMTGGLYGVEALSRWHHPTLGNIYPSRFI 535

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L+     ++ W       P  + +N+++    +  L E +  L+
Sbjct: 536 AVAEETGQIEAIGRWSLQEACSQMVRWDRDGVHVP-TVAVNLSAVHFRNRSLPEYIANLL 594

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P R+ +  +ESV+M +   +  +L  +R++ + L++DDFGT  S LS L  +P 
Sbjct: 595 GQHGLTPDRLTVEITESVMMDSSSETEEVLHAIRRLDVGLSMDDFGTGYSSLSRLTRLPL 654

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E   + L  + CD +Q
Sbjct: 655 TEIKIDRSFINDFEHDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQWRLLEELHCDVMQ 714

Query: 937 DSHVASPLGFNSILKLLKERF 957
               A PL    + K  +ER 
Sbjct: 715 GYLFARPLPPAELEKWFRERQ 735



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  + D +   D     +        I GL    + G   N    + + +R    + +D
Sbjct: 30  AMEQAIDPMVVIDEHNRIILFNAAAERIWGLPRAQVLG--ENVSCLVPVAERAQHDSYID 87

Query: 470 SFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                  GR+     E   R A+ ++    + I  +  ++   + YI +  D+TEQ +  
Sbjct: 88  RNRETGIGRIVGTSREVEFRRANGEYVCGELSISRVQLADSHKIYYIAVMKDVTEQSRQR 147

Query: 527 E 527
           +
Sbjct: 148 K 148


>gi|237731655|ref|ZP_04562136.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
 gi|226907194|gb|EEH93112.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
          Length = 705

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 205/436 (47%), Gaps = 7/436 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +    +      D LTG+ NR      L   L  S    + +  ++ ID+D++K +ND
Sbjct: 250 LHQLNCQLEHQVHFDALTGLANRTQIDACLQACLQHSKLHQH-QFALVFIDLDRFKVVND 308

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  +GD +L++ T+RI   L     LARL G+ F +++   N    I      +  +I
Sbjct: 309 TWGHHIGDQLLIASTQRIYSCLDDTMTLARLGGDEFILLVPDCN-KEDITALLTRIAAAI 367

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  L    I V+ S G + +     T  E+   A++AMYH K  G N    +      
Sbjct: 368 GDPFTLFGYTIRVSLSAGSSIYPEHGSTLHELKVKADMAMYHVKQAGRNGWAIYSPEMEA 427

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                    ++L  A+E+ +  L Y P     D  + G EAL++W HP+ G +  +EF+ 
Sbjct: 428 IADTPPTFLQELSQALEHDQFELWYQPKYTAGDHFLSGFEALLRWHHPERGMLLPAEFLP 487

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             EE  +I  +  +++++  + +  W+ Q +     + +N++      +++ + + + ++
Sbjct: 488 ALEETGLIIPVGKWVIQQACQQLHQWKLQGHAE-WTLAVNLSPSQFEQHDIVDVVCSALA 546

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP+ + L  +ES  + N +RS  +L     +GI++++DDFGT  S +  L  +P  
Sbjct: 547 QYQLSPAYLTLELTESTALKNLKRSAEVLNAFSALGITVSIDDFGTGYSNILMLKSLPAR 606

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +   +E      I+ +II +A ++   ++A+ I  +     LT+MGC  +Q 
Sbjct: 607 ELKIDRVFVKDISENSKNTKIVSTIIDIAHSMNMQVVAEGIETQEQEILLTQMGCGVLQG 666

Query: 938 SHVASPLGFNSILKLL 953
              A PL  + I +L+
Sbjct: 667 FLFAKPLPAHQIHELI 682


>gi|316933598|ref|YP_004108580.1| PAS/PAC GAF sensor -containing diguanylate
           cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601312|gb|ADU43847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodopseudomonas palustris DX-1]
          Length = 872

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 207/437 (47%), Gaps = 8/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +S   I   A+ D LTG+PNR    D +      +A        +  +D+D +K IN
Sbjct: 406 ERMESRAQIARLAYFDMLTGLPNRARLRDLIGEA--TAACPQGRSVALAFLDVDNFKDIN 463

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD+ LV   RR+ + ++  D++ RL G+ F ++L +     +I      +  +
Sbjct: 464 DTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDEFVVVLPN-REPAEIEPVVARISDA 522

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P  L   ++ ++ASIG + +  +      ++  A+ AMY AK  G +    F     
Sbjct: 523 LMLPFALCNSQVPMSASIGVSLYPDNATDIDTLINQADTAMYRAKRSGRSTYRLFNCDMH 582

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +    +     L  A+ +S L L Y P IR  D  + G+EA+ +W  P  G +  ++F+
Sbjct: 583 GAAEQRMAYAAALRSALADSRLELHYQPQIRTADGALHGVEAMARWHDPVLGPVPPAKFI 642

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  + +    R +  WRDQ    P  + +N++  +  +  L   +   +
Sbjct: 643 PLAEECGLIDQIACWSIREACRQMRVWRDQGLEVP-SVAVNLSPINFENAALPTLVADTL 701

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P  + L  +E V   N   +   +  LR+IG+ L+LDDFGT  S L+ L  +P 
Sbjct: 702 AGYHLPPEALMLEVTEGVAQDNRSTAHETMVALRRIGVGLSLDDFGTGYSNLNRLAQLPI 761

Query: 879 DTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   M+    +    A++ +++ + +++  +++A+ +  +   + L+ +GCD +Q
Sbjct: 762 RELKIDRGFMSELEISATACAVVTTVVRVGQSLALSVVAEGVETKAQFQLLSELGCDVVQ 821

Query: 937 DSHVASPLGFNSILKLL 953
               A  L      + L
Sbjct: 822 GFLYAPALAPERFEEWL 838



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 8/131 (6%)

Query: 403 DGERQS--LAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           + ER+     +    D     V   D     + T    A + G  +    G     L   
Sbjct: 122 ELERRKGIELLTSIADRTTRAVLVTDPELRILYTNAAFAVLFGYGADEAKGRNIIDLLAG 181

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  +R      L  ++    G  + E  V   + +  W+   ++ + +  G I +   + 
Sbjct: 182 HHTNR-RMMAGLKRWMADDEGG-EEEILVYDKNGEEVWISADVKALRDPQGRITQVFALL 239

Query: 517 NDITEQKKSLE 527
            DI+E ++   
Sbjct: 240 TDISETRQLRM 250


>gi|329898814|ref|ZP_08272476.1| hypothetical protein IMCC3088_711 [gamma proteobacterium IMCC3088]
 gi|328920714|gb|EGG28183.1| hypothetical protein IMCC3088_711 [gamma proteobacterium IMCC3088]
          Length = 803

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/586 (21%), Positives = 244/586 (41%), Gaps = 24/586 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
            L+     Q    T   +Q    +     R ++ +  +  +VW +D + D    T     
Sbjct: 230 ALLRDLENQVASRTSELNQTLGELNESFNRLNVVLGAANALVWTFDRINDVFHFTGATDD 289

Query: 437 I--LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           +  +GL   S +  +   L  +H + R+       S++      L  + ++  +   + W
Sbjct: 290 LSNIGLDDNS-NVTVEQILDKVHPSGRERLVDKFSSYLLE-GAELDEQVQLEVSHGHYRW 347

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +   P+          +G   D+ ++ +  + I   A  D LTG  NR  F       
Sbjct: 348 FHLTGVPIQQDAKREELALGSMIDMDDRIRQEQRIWEMAHSDELTGTGNRTRFTMAFDEA 407

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +           T+M+ DI+ +K IND  G  VGD VL++    +   L     +ARL G
Sbjct: 408 IQT-----GSSGTLMLADINDFKLINDTKGHLVGDRVLIAFAETLKRHLPVQATVARLGG 462

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + FG++ + E     +      ++  +    +    E+ V+ S+G A +         ++
Sbjct: 463 DEFGVVTVPELTKADLEILFQRLKADLGGRADF-GLEVPVSISLGAAHFPLHGQDLESVM 521

Query: 675 KNAELAMYHAKHR--GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
             A++AMYHAK    GG+    F   + + R  R  ++  +  A+ N EL + Y P+   
Sbjct: 522 HCADVAMYHAKQNKLGGSASSVFYAGMDAERLTRSALRSRIDQALNNRELEIWYQPVWND 581

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
                   EAL++W      +IS  E +  AEE  +I  +  F+++ +   + S      
Sbjct: 582 DSGYFRRCEALLRWP---GESISIQEVIDAAEESELILRLGEFVVDEVCSFLASVPSH-- 636

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + INI+        L   +++   +    P R+ +  +E   + N E +  +L  
Sbjct: 637 QEDLSVSINISPVQFHYQNLEHLIKSSCERYKLDPKRLMIEITERTTIENAELAGKVLSA 696

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKN 908
           L+++G+ L LDDFGT  S LS L  +  D +K +   +      +    I+ +++ MA+ 
Sbjct: 697 LKQMGLDLALDDFGTGYSSLSTLHELEIDWIKIDRRFVQDIDTNQNSYQIVNALMRMAQA 756

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++  +IA+ +  + +   L  +G   +Q  + A P+    +L  LK
Sbjct: 757 LDIRVIAEGVETDQEYATLRSLGVRMMQGYYHARPMNQQQLLAFLK 802


>gi|315127837|ref|YP_004069840.1| hypothetical protein PSM_A2776 [Pseudoalteromonas sp. SM9913]
 gi|315016351|gb|ADT69689.1| hypothetical protein PSM_A2776 [Pseudoalteromonas sp. SM9913]
          Length = 843

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/570 (20%), Positives = 244/570 (42%), Gaps = 18/570 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q +  +    + +FS  +R  L +     +V + D   +     P   ++ G    S  
Sbjct: 266 VQQLSISEVKYRDLFSAHQRILLHL---NTVVLELDQQGNIRFINPAWESLSGFGVKSTL 322

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                   +     + + ++ +D  +     + + E +++  +    W+  R++ + NS+
Sbjct: 323 KQPLT--AFCTKEYKQSLQSTIDDILQGGANKQKIEVKLQQKNGNSVWVECRLQLIKNSS 380

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +        ++I E+K++   +   A  D LTG+ NR  F  +L  I     T  N+  
Sbjct: 381 NNAT-ITATLDNIHERKQAELQLRHLALHDTLTGLHNRYYFDQQLNYICQSENTYANIEH 439

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ ID+D +K IND  G   GD VL  + +     +    ++ R+ G+ F +IL + N 
Sbjct: 440 ALIYIDLDHFKIINDSKGHQQGDIVLKEVAQLFIANISNEHLICRVGGDEFAVILKNTNL 499

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                                 ++  +++ SIG    T+     +E LK +++A+Y AK+
Sbjct: 500 LDAHLIAEGICSAIEGNQFKSEDQVYSISCSIGLTQITADNCDPNECLKQSDIALYIAKN 559

Query: 687 RGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            G N V  +      ++ +         +  A++   + L Y PI      ++   E L+
Sbjct: 560 LGRNLVHCYSKQDGENNALQTGLEWGHGVRQALQQDSIELHYQPIWDFKTNQVAYFEVLL 619

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        I  ++F+   E L     ++  ++      + +  +      + + IN+++
Sbjct: 620 RLKLDD-ELIYPNQFIPSLEMLNDTFLMDQCVIRNSIASVAAHPEL-----LQVAINLSA 673

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +  LD  L   +++ + K   SPS+I    +ES  + N   +R ++ RL  +G   ++DD
Sbjct: 674 QSFLDERLLPLIESSLEKYQVSPSKIIFEITESASINNLAATRKMIERLNNLGCHFSIDD 733

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S  +YL  +P   VK +GS +         +A++++I  ++++++   +A+ +  
Sbjct: 734 FGTGFSTFNYLKQLPAQHVKIDGSFVRDMLNDSIDLALVKAINDISRSLDKRSVAEYVET 793

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 L  +G DY Q   +A P+  + +L
Sbjct: 794 AEVFFALKEIGVDYGQGYFIARPVPIDKVL 823


>gi|77461476|ref|YP_350983.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385479|gb|ABA76992.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 707

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/571 (22%), Positives = 255/571 (44%), Gaps = 15/571 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++  A    SQ + S     +  +  + + +             P I+ +L      + G
Sbjct: 135 RNRRALQRLSQDLESARAFNASVLDNAAEGILVLGEDGLIRFANPAISRLLNAPVKELEG 194

Query: 448 PIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +L ++       +       S+      RL  +  +R A  Q   + +   P+ + 
Sbjct: 195 Q--EFLDFLQKPHIPLWADSEFYASYKRGETLRLH-DALLRTAPGQQVPVALSCAPLPSE 251

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                  +    D++  +   + +   A  D LTG+ NR+ F   +  +L      D+  
Sbjct: 252 QH---AMVVTVLDMSVVRHLHQQLEFQAVTDPLTGLLNRRGFYQTVENLLLRGERTDSSW 308

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +M +D+D +K++ND LG   GD VL  ++ ++   L+  DILAR+ G+ F  +L    
Sbjct: 309 V-LMYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLKACLRPFDILARMGGDEFTALL-DLE 366

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              + A  A  + + +++   +   +I + ASIG A++         +L+ +++AMY AK
Sbjct: 367 FPEQAAKIAEKLIERVSICQQIEGLDIALGASIGIATYPDCGNNLDGLLRASDIAMYEAK 426

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G      +          R+M++E +  A+EN +  LVY P + + D  I G EAL++
Sbjct: 427 RAGRQQYRFYDHEMNGRARSRLMLEESVRNAIENRDFNLVYQPQVAIGDGRIRGFEALLR 486

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G++    F+ + EE  +I  +  ++  R A    +W  + +   + I +++++ 
Sbjct: 487 WQHPSVGDVPPGLFLPLLEEATLISRLGSWIYHRSAGQRKAWESEFSQ-DLVIGVSLSNT 545

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   ++ ++ +    P ++++  +E  +  NP+ +R  L  LR +G+ + LDDF
Sbjct: 546 QFGLPNLVTELRQVLERHGLQPHQMEVEVTEEALTINPDETRKQLKLLRNLGVRVALDDF 605

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+    L++L  +  DT+K +  L+     + +  +++R++I + K     +IA+ +   
Sbjct: 606 GSGSCSLAHLRDLELDTLKLDRHLIARLPDSSRDASLVRTVIDLCKEYGLLVIAEGVETV 665

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              + L   GC+Y+Q   VA PL      + 
Sbjct: 666 EQYQWLQAHGCEYVQGFLVARPLVAEDTARF 696


>gi|257469485|ref|ZP_05633577.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063729|ref|ZP_07928214.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689405|gb|EFS26240.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 1025

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/554 (20%), Positives = 233/554 (42%), Gaps = 23/554 (4%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                V+ + D ++  ++   R   TP +  +  L S  +  PI  W   +H +D + F  
Sbjct: 483  YEALVMSTDDFIYICNMKTGRFKYTPAMVEMFNLPSDIIRNPIFLWKNIVHEDDWEKFYQ 542

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                    +      EFR +  D ++ W+  R   M +  G+   + GI   + +Q K  
Sbjct: 543  SNMEIGEDQLDYHLVEFRAKNKDGEYVWLRCRGHLMRDEVGEPSIFAGIMTLMGKQNKI- 601

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                     D +T + N   F       +   A +      +M++ ID +K++N++    
Sbjct: 602  ---------DIVTRLLNINEFSKSFEEKIKDYAVE---TIGMMILGIDDFKQVNEMYDRE 649

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GD VL    + I   L    +  RL G++FGI++ +  +  ++ +    ++   +    
Sbjct: 650  FGDGVLKMTAQIIQSSLPRNALAYRLDGDQFGILVEN-TDHDELQNIYDRIKMKFSRQQL 708

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
              + +  VT S G + +        E+ K  + ++ +AK  G + +  F       +S  
Sbjct: 709  FEKSKAFVTISAGCSLYPQDGNNYQELYKYTDYSLQYAKKSGKDKIVFFSNDILEHKSRF 768

Query: 705  VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            + I   +  ++EN   E  + Y P +   + ++ G+EAL++W   K+G+IS  EF+ I E
Sbjct: 769  LEILRRIRESIENGFEEFEVFYQPQVFCKNTKLKGVEALLRWKCEKFGSISPEEFIPILE 828

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            E  +I  +  ++L+   +             I + IN +   LLD      ++ +IS+  
Sbjct: 829  ESGLIIPVGKWVLKEALKTCKEMLK--YDKNITVSINCSFIQLLDENFLNDVKNIISEEN 886

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              P  + L  +ES ++ + E       +++++GI   +DDFGT  S L  L  +P + VK
Sbjct: 887  VPPENVILELTESCIIKSIETLHERYRQMKEMGIKTAMDDFGTGYSSLGILKQVPANIVK 946

Query: 883  FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             + + +     +   I  +  I  +  +++  +  + I  + + + +  +  DYIQ  + 
Sbjct: 947  IDRAFVKDIVKSRFDITFIEFITRICHSVDIKVCLEGIETKEEFELVRNLEIDYIQGYYF 1006

Query: 941  ASPLGFNS-ILKLL 953
              P    +     L
Sbjct: 1007 GKPQPKKNIFENFL 1020



 Score = 80.4 bits (197), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 500 RPMSNSNGDILRYIGIANDITE----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             +  ++G I+ +     DIT+    +K  ++ ILC           N ++    +   +
Sbjct: 269 SLIKWTDGSIVHFQES-TDITDTLTLKKNVVQDILCE-------EALNWRAGKAEMAKSI 320

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +  +      V  +D+D  K IN+  G   GD V++   + I   L   + + RL G+
Sbjct: 321 QEAKKNKK-NFVVATVDMDDLKMINERYGHIEGDLVIIETMKVIKSFLTEKEFIFRLEGD 379

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS-EML 674
            F ++         +          +      L++E   +   G       +     +++
Sbjct: 380 NFIVVFEDRTEKE-VVKLLFECLDKLKARKRELKKEFNFSFCFGTVETHPDEEIFENDII 438

Query: 675 KNAELAMYHAK 685
             A+  +Y  K
Sbjct: 439 ARADKKLYFQK 449


>gi|331017973|gb|EGH98029.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 683

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  S     + A+ A  +   +
Sbjct: 298 QFSYRAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++ +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLTYLKQ 674


>gi|120402963|ref|YP_952792.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955781|gb|ABM12786.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium vanbaalenii PYR-1]
          Length = 617

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 217/454 (47%), Gaps = 8/454 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  + ++ E +   A  D+LTG+ NR++ L  L   L           + +  
Sbjct: 163 IASLFAQVQARVQAEEQLRYLAEHDDLTGLYNRRALLAHLDERLAEGRPGP---VSALFF 219

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +  L  R+      P+I+ARL G+ F ++     +     
Sbjct: 220 DLDRLKAINDYLGHTAGDWFIRVLAERLRRGADCPNIIARLGGDEFVLVPTVPMDGAAAE 279

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  ++ ++   +++    +T T SIG A     + T+S++L+ A+ A+  AK  GGN 
Sbjct: 280 ALAHRLQSTLRERVSIDGEMLTRTVSIGVAQGIPGRDTTSDLLRRADQAVLTAKGSGGNE 339

Query: 692 VESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F   +S        I+  L   +EN  L L Y P + +   EI+  EAL++W HP  
Sbjct: 340 VVVFTDDMSMRHEFNNDIELHLQSVIENGALLLHYLPEVDMRTGEILACEALVRWQHPTR 399

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S   F+ +AE + +   +  +++     D   WR +       + IN++   L+ + 
Sbjct: 400 GLLSPESFIGVAESINLAGELGRWVMRSACADFAGWRARGIGTGTVMRINVSPVQLVTDG 459

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +  ++ +       + L  +ESVV+ + E +R+ L  L++ G+ + +DDFGT  S 
Sbjct: 460 FVESVAGIVDEFDLDEGSVCLEITESVVVQDIETTRVTLKGLKEAGVRIAIDDFGTGYSA 519

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P DT+K + S +   GS    +AI+R++I +A+     ++A+ +  E     L
Sbjct: 520 LSHLKSLPVDTLKIDKSFVRELGSDPGDLAIVRAVIALAEAFGLELVAEGVETEAAAMTL 579

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960
            R GC   Q   ++ P+   ++  LL   R P+ 
Sbjct: 580 LRHGCHRAQGFLLSRPIDGAAMKALLARGRVPVS 613


>gi|167035467|ref|YP_001670698.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166861955|gb|ABZ00363.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 683

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL       + R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQH-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 290 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P +L   +I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEVPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++LYLVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGM 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I +I  ++L++  R +  W DQ     + + +N+++  L  +EL 
Sbjct: 470 VPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHDQ-GFSDLRMAVNLSTVQLHHSELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 QGCHEGQGYHYSKPLSARELTHFLKQ 674


>gi|209516198|ref|ZP_03265056.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209503309|gb|EEA03307.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 696

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/730 (20%), Positives = 288/730 (39%), Gaps = 53/730 (7%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL---FCMS 300
           +     + I  A + +A  ++L +   ++L  +        +  +    + I    F   
Sbjct: 4   SYNLWLVAISFAVATLASYTALDLTGRIFLLASARGRHAWRLGGALALGVGIWSMHFVAM 63

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL---IFIWFIGLWMA 357
             + +       +TL +  L       Y  +    RA L  P  +L   + +      M 
Sbjct: 64  LAFSLPIPLGYDLTLTACSLALAIGASYLALCMTTRARL-TPGRLLAGGVLMGIGIAGMH 122

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
            T       + PA+       V  I   +     A  + ++ + ++ ER  +A+      
Sbjct: 123 YTGMAALR-MAPAIEYQPAWFVASIAIAIGASSAAL-WMARALSNEDERH-IALKRLAAA 179

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +     +          A     A  ++ G   +               +  S +     
Sbjct: 180 LVMGVAISGMHYAGMAAAR---FAPDAICGAANDINS----------TWLATSVILLTLA 226

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L     +   D +  +++  +  +   NG ++R                     A  D 
Sbjct: 227 VLTVTLMLSRFDVRTTFLLGAMSKL---NGQVVR--------------------LATLDA 263

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PNR +  +R+   + ++    +    V+ +D+D +K IND LG + GD VL +  R
Sbjct: 264 LTGLPNRATLTERIERAISVARR-QHSSFAVLFMDLDGFKTINDSLGHSTGDAVLSAFAR 322

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+ + ++  D +ARL G+ F ++     +    A+ A  +   +       E+ + V  S
Sbjct: 323 RLLQCVRSTDTVARLGGDEFVVLAEHLASGNDAAELADGVLDRMRQGTWSDEQPLQVMPS 382

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAV 715
           IG A +     T   +LK+A+ AMY AK  G      F  S        + I++ L  A+
Sbjct: 383 IGIALFPRDGDTVDTLLKHADAAMYEAKRAGRGTYRFFERSMNEAAMRTLQIQQALHEAL 442

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N    L + P      + + G EALI+   PK G ++  EF+ +AE    I  I  +++
Sbjct: 443 LNDRFSLQFQPKFHGDGDALTGAEALIRLYDPKMGTLAPLEFIPVAERSGQIVQIGYWVV 502

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               R I  W +Q   P + + IN++ + LL  +L E M  ++     +  +I    +ES
Sbjct: 503 GETCRRIRGWIEQGL-PAMKVAINLSPRQLLQPDLVETMLDIVRSEGVACEQIMFEITES 561

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           V M +  R+  ++   +  G  +++DDFGT  S L+YL       +K +    +G     
Sbjct: 562 VAMHDAARTVEVIRAFQASGFDISIDDFGTGYSSLAYLQRFKAKQLKIDRFFTSGLDTHG 621

Query: 896 I---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               AI+ +II +A ++E  ++A+ +  +    +L  M CD +Q   +  P+  +   +L
Sbjct: 622 AAGSAIVSAIIALAHSLEMDVVAEGVETQSQFDKLRSMMCDEMQGFLLGKPINADDFGEL 681

Query: 953 LKERFPLVKN 962
           L+ R  +   
Sbjct: 682 LRARMTMTVR 691


>gi|328470931|gb|EGF41842.1| hypothetical protein VP10329_09052 [Vibrio parahaemolyticus 10329]
          Length = 751

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 218/438 (49%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ E +L  A  D+LT +PNR+     +   +       +   T+M IDID +K +ND
Sbjct: 313 EHETKERLLYQACHDHLTRLPNREYLRSNIQRWM----CGSSNPFTLMFIDIDNFKSVND 368

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+VL  ++ R+        ++ R + + F  I+ +  +   I D A  + +++
Sbjct: 369 THGHEFGDEVLKQISTRLNHFSGEGRLIVREASDEFIFIV-NRTDEETIKDLASELIQTL 427

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P N+ + +  ++ SIG A +         +L +A++AMY AK +  N    F      
Sbjct: 428 SKPYNVNDNQFLLSCSIGIAFYPMHGDNLDALLLSADIAMYQAKKQ-RNAYSLFNQEMQA 486

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S    +  ++ L LA+E   L++ Y P + + + +I G+EAL++W+  + G +  +EF+ 
Sbjct: 487 SHLHKMKVEQRLRLAIEKQTLFMAYQPQLNI-NGKIYGVEALVRWEDEELGKVPPNEFVP 545

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +   ++E+   D+          PI + INI+ K  L  +  E + A + 
Sbjct: 546 VAESSGLMVRLGELIIEKSLEDM-DLLTTHLATPIQMSINISVKQFLHAKFIERLMAAMD 604

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K     +RI L  +E++ + + E+      RL  +G  ++LDDFGT  S LS L  +P D
Sbjct: 605 KYHLDCNRITLEITENLFIEDLEKFSPTCERLHALGFKISLDDFGTGYSSLSMLRTLPID 664

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +      + A  ++++II + KN E  ++A+ +  +    +L   GCD IQ 
Sbjct: 665 EVKIDKSFVDNIEHDKKALNMVKNIIAIGKNFEMKVLAEGVETQRQRDQLEACGCDLIQG 724

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL F+ ++  +K+
Sbjct: 725 YFYSKPLSFDQLVSFVKD 742


>gi|256785053|ref|ZP_05523484.1| phosphodiesterase [Streptomyces lividans TK24]
          Length = 746

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 217/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 306 LRDPLTGLPNRQWLLERTWTALDDAER-IGARAALMLIDLDRFRSVNDTLGHLAGDRLLL 364

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               R+ + L      ARL G+ F ++L   +++      A ++  +++ P++L    + 
Sbjct: 365 QTADRLRQALPRGAEAARLGGDEFAVLLPVADSTTSATRIARSLVGALSSPMDLDGLTLV 424

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 425 LEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 484

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 485 RALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 543

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 544 YVLETALGQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 601

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 602 TEHVLLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 661

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 662 IDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPEETT 721

Query: 951 KLLKER 956
             L  R
Sbjct: 722 AWLLAR 727


>gi|284988698|ref|YP_003407252.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284061943|gb|ADB72881.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 697

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/583 (21%), Positives = 252/583 (43%), Gaps = 28/583 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLG--------SGDIVWDWDIVRDRVTTTPDIAT 436
             ++ V       Q   ++  + S  +          +GD   +  +V    T   +   
Sbjct: 107 AFLRDVDDQRRTEQRRLAELRQLSAVLEALPPATVLLAGDGRIE--MVNRAWTANGEALE 164

Query: 437 ILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHW 494
             G     +          Y+      +    L S       +  + F        +  W
Sbjct: 165 RTGDRPARVGEHYLEAMARYVDAEHHADIAAGLRSLADSGAPQSTFTFDYPHQVGPEPAW 224

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             ++   +  S+    R I    DITE+ +  + +   A  D+LTG+PNR   L+ +   
Sbjct: 225 FRLQAARVDASD----RVIVTHTDITERVRDQQALAWQASHDDLTGLPNRARLLELIGEA 280

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L+           ++ +D+D +K +ND LG  VGD++L  +  R+ E ++  D + RL  
Sbjct: 281 LE----PGRGPAALLFLDLDGFKTVNDSLGHHVGDELLRRVGGRLAEQVRPGDAVGRLGA 336

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++F ++L  + ++ + A  A  ++ S + P +     + ++ASIG A        + ++L
Sbjct: 337 DQF-LVLARDCDTAEAASLAFRLQSSFSRPFHAEGISVPLSASIGVAVAQPGADRAHQLL 395

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC-LAVENSELYLVYHPIIRLMDE 733
            +A+ A + AK  G + V  F      + R  ++           E  + Y P++R+   
Sbjct: 396 SDADTAAFAAKGAGRDRVHVFSPGLREAARWRLEVANRLRDGAVDEFVVHYQPVVRVDTG 455

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E+ G+EAL++W HP+ G ++   F+ +AEE   +  I  ++L    R    W  Q    P
Sbjct: 456 EVEGVEALLRWQHPERGLLAPDAFLSVAEETGQLIPITRWLLCETTRQAAEWAAQG--LP 513

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +NI+++      L   ++  +  +  +P  + L  +E+ V  +P R+   L  L+ 
Sbjct: 514 LRMSVNISARHFSAETLVRDVRVALHDSGLAPENLVLELTETSVAEDPTRAEDQLSILQT 573

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNI 909
            G+S+ +DDFGT  S L+ L  +P  T+K + SL+      ++     +L +I+ +A+ +
Sbjct: 574 SGVSVAIDDFGTGWSSLAQLLALPVGTLKIDRSLLTAAARLASNGTGPVLAAIVSLARTL 633

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               +A+ +     ++ +   GCD  Q   +A P+  + +L  
Sbjct: 634 GIRSVAEGVETAEHLQMVREAGCDLAQGYLLAHPMPASEVLHW 676



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 30/129 (23%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D V+  D              +LG  +  M G                     + 
Sbjct: 16  LSSVTDAVYRIDRRWRFTYVNAAAQRLLGRRADEMIGRY-----------------AFEC 58

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMII---------RIRPMSNSNGDILRYIGIANDITE 521
           F       ++ E+R    D +                IR  +++ G          D+ +
Sbjct: 59  FPETLGTVIEDEYRAVLLDGRVREFEYFYPPLDRWFEIRAFADAGG----LTAFLRDVDD 114

Query: 522 QKKSLEGIL 530
           Q+++ +  L
Sbjct: 115 QRRTEQRRL 123


>gi|171057221|ref|YP_001789570.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170774666|gb|ACB32805.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptothrix cholodnii SP-6]
          Length = 784

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 208/450 (46%), Gaps = 19/450 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++S   I   A+ D LTG+PNR      L   +  +  D      ++ ID+D++K +N
Sbjct: 319 ERERSHAHIHQLAYYDGLTGLPNRALLQANLARAITQAQQD-GTTLALLFIDLDRFKDVN 377

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD++L  + +R+   ++   ++ RL+G+ F ++L       +    A  ++++
Sbjct: 378 DSHGHAVGDELLREVAQRLAGEVRDRSLVCRLAGDEFVVVLPHCG-VEQARHTAERVQQA 436

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +A PI + + ++T  A +G A +         +L++A+ AMY AK  G   +  +R  ++
Sbjct: 437 LARPITVGDLDLTTGACLGVAMYPDDGSDLDRLLRHADAAMYQAKKDGRGGLHFYRAEMN 496

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL------------MDEEIVGLEALIQWDH 746
               DR+ +  DL  A+    L L + P +                  + G+EAL++W H
Sbjct: 497 RAAEDRLRLAADLRAALHRGGLQLHFQPQVCPPGKTPRSPAAGPASMSLFGVEALLRWRH 556

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G++S   F+ +AEE  ++  ++ ++LE     +  WR      P  + +N++ ++  
Sbjct: 557 PVLGDVSPERFIPVAEEAGLMDELSNWVLEAACAQLAGWRADGIDVP-RVAVNLSPRNFQ 615

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L   ++ L+ +      ++ L  +ES  +     S   L  L+ +G+ L +DDFG  
Sbjct: 616 DPGLPARVRQLLDRHGLRGDQLTLELTESAWIDRRADSLDKLRALQALGVGLAMDDFGNG 675

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LS+L  +P   +K + S +           +  +++ + +++   ++A+ I      
Sbjct: 676 QSSLSHLHRLPLRQLKLDRSFVHDIEHLAVAQTLAAAMLHIGESLGLIVVAEGIETAAQA 735

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             L   GC  +Q    A  +    I   L 
Sbjct: 736 AFLIEHGCPVLQGDRYAQSMAAEQIGPWLA 765


>gi|316931943|ref|YP_004106925.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315599657|gb|ADU42192.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 553

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 222/472 (47%), Gaps = 18/472 (3%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D + +W+ I   P          ++  A DI+E+ +           D LT +PNR  F
Sbjct: 83  PDERIYWIDITAFP--------GGWLISAADISERLRQGIVGAELVRTDRLTQLPNRLVF 134

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            +RL  +L     D      V+ +D+D++K IND LG  +GD +L  + +RI   L   D
Sbjct: 135 RERLGDLLAQ-PLDIRRDAAVLTVDLDRFKAINDTLGRTIGDALLCLVAKRISSALTPSD 193

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           +LARL  + FG+I    +        A  +   +  P  L  + I V+A +G A  T   
Sbjct: 194 VLARLEADEFGVIQTGRDQPEAAVMLAKRLVDLLGRPYLLEGQLINVSAFVGIALLTDDD 253

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYH 725
           +    + KNA+LA++ AK         F  +   S R    ++ DL  A+   E  LVY 
Sbjct: 254 LDVDAVSKNADLALHRAKQERYAGYRVFESAMDESMRARRALETDLRRALALREFSLVYQ 313

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    + G EAL++W  P  G +S  +F+ IAEE  +I  I  ++L    RD  +W
Sbjct: 314 PQVNLQSRRVSGFEALLRWRCPTRGPVSPLDFIPIAEETGIIGPIGEWVLRTACRDAAAW 373

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                     + +NI++    +  L   + + ++ +   P R++L  +ESV++ +   + 
Sbjct: 374 P-----GDYMVAVNISAIQFANRSLVATVVSALADSGLDPRRLELEITESVMLDSRGNAL 428

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
            +L +LR +G+ ++LDDFGT  S L YL   PFD +K + S +  ++E     AI+R+I 
Sbjct: 429 AVLQQLRGLGVRVSLDDFGTGYSSLGYLRSFPFDKIKIDQSFVRAASEDPGNRAIVRAIA 488

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  ++    +A+ +  E  +  +   GC  +Q   ++ P+    I   L E
Sbjct: 489 SLGASLGMATVAEGVETEDQLARVAADGCTDVQGHLISRPIPPGDIEHFLAE 540


>gi|21223851|ref|NP_629630.1| phosphodiesterase [Streptomyces coelicolor A3(2)]
 gi|4467246|emb|CAB37571.1| putative phosphodiesterase [Streptomyces coelicolor A3(2)]
          Length = 746

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 217/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 306 LRDPLTGLPNRQWLLERTWTALDDAER-IGARAALMLIDLDRFRSVNDTLGHLAGDRLLL 364

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               R+ + L      ARL G+ F ++L   +++      A ++  +++ P++L    + 
Sbjct: 365 QTADRLRQALPRGAEAARLGGDEFAVLLPVADSTTSATRIARSLVGALSSPMDLDGLTLV 424

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 425 LEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 484

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 485 RALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 543

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 544 YVLETALGQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 601

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 602 TEHVLLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 661

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 662 IDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPEETT 721

Query: 951 KLLKER 956
             L  R
Sbjct: 722 AWLLAR 727


>gi|295106548|emb|CBL04091.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 871

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 227/551 (41%), Gaps = 22/551 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++          +    GL +  +      W  ++H +DR  F  
Sbjct: 331 YDALVDSTDDYLYVCNMKTGVFRYPQAMVEEFGLPAQVVADAAAVWGSHVHPDDRQAFLE 390

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                V  R  R   E+R      ++ W+  R   M + +G+   + G   ++ E+K  +
Sbjct: 391 SNQDIVDGRTTRHCVEYRALNRAGEYVWLRCRGMLMHDGSGEPSLFAGFIANL-EKKNKV 449

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D+LTG+ N+  F D +   L+   T  + R  +MV+ ID  + IND     
Sbjct: 450 ---------DHLTGLFNKFEFEDVVRRALE---TRPDERLGLMVLGIDDLRHINDRYDRG 497

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GDDV+  +  RI   L     + RL G+ F ++   + ++  + D   A+ +S      
Sbjct: 498 FGDDVIRIIAHRIQSALVGRAHVYRLDGDEFAVVARGD-DAATLPDVYQALHQSFRRQQT 556

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              ++   T S G A + +   T  +++K A  A+ +AK  G      F           
Sbjct: 557 HEGKKFYCTLSAGCAQYPADADTYEDLVKFANYALEYAKAHGKKRRVPFSPGILAERSRT 616

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  E L  ++E+      LV+ P +   D  ++G EAL +W     G +   EF+ + E
Sbjct: 617 LELVERLRDSIEHGFEGFRLVFQPQVNAADGRVIGAEALARWSCDACGEVPPLEFIPLLE 676

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I     ++L R       WR     P   + +N++ + L + +L   +   ++ T 
Sbjct: 677 ESGLIVPFGAWVLHRAMETAARWRA--WDPGFVMSVNLSYRQLDEAKLVPSIAEALAATG 734

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+ + +  +ES    + E ++ L   +R +G+ + +DDFGT  + L  L   P D VK
Sbjct: 735 LPPANLVVEMTESCFASSSEAAQKLFAGVRALGVRIAMDDFGTGYAALGMLKQSPADIVK 794

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +    +       +R ++ +  ++   +  + +    + + ++ MG D IQ    
Sbjct: 795 IDRTFVRDIRDSTFDATFIRFVVELCHDVGIRVCLEGVEVPEEYEAVSGMGLDSIQGFLF 854

Query: 941 ASPLGFNSILK 951
             P   +   +
Sbjct: 855 GRPCPPDEFER 865



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 102/297 (34%), Gaps = 30/297 (10%)

Query: 401 FSDGER---QSLAVLGSGDI----VWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNW 452
            +DGER      A+    D     V+  D   D +      +    GL         +  
Sbjct: 19  RTDGERADAYRFALDTVLDGMRANVYVTDPATDEILYMNRYMREDYGLDRPEGTLCWQTL 78

Query: 453 LPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
              +  + R  F     L++    R    +      +   + +        +   +G ++
Sbjct: 79  QRNL--DRRCPFCPVDKLEAAEPGRLVEWEET---SSKTGRVYRNCDS--LIRWFDGSLV 131

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
                  DIT+ K         A  D LT +  R+    RL   +D    D++   +V +
Sbjct: 132 HLQQSV-DITDVKT--------ASIDELTELLTRRVGKGRLQARMDR-ERDEDDVFSVCL 181

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            DI++ K+IND  G A GD VL +        L   +   RLSG+ F  ++    ++ + 
Sbjct: 182 FDINRLKEINDRFGHAEGDVVLRAAADAARSQLSGEEFAFRLSGDEFVCVVEG--DAAEA 239

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                     ++  +    RE      I      S     +E+L  A+  MY  K R
Sbjct: 240 RGKMERADDLLSSRVKGDLRETGFCFGI-VEVHGSDTSEVNEVLTMADERMYEQKRR 295


>gi|190573974|ref|YP_001971819.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011896|emb|CAQ45517.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 847

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 214/433 (49%), Gaps = 12/433 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+ ++ + +   A  D LTG+PNR   LDRL   L L+  +      V+ +D+D++K 
Sbjct: 415 IGERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDSLALAKREGGPVFAVLFLDLDRFKL 474

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G A GD +LV + +RI  +    D++ARL G+ F ++L       +  DF   + 
Sbjct: 475 VNDSIGHAAGDRMLVEVAKRIVSMAGAEDVVARLGGDEFAVLLQCPQGLAQALDFGQRLL 534

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++   + +  RE+  + S+G A W     T  E+L++A+ AMY AK +G +    F   
Sbjct: 535 LALQESMWIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCAIFDED 594

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + ++ DL  A+ N +    Y PI+RL D E+VG EAL++W H + G +    
Sbjct: 595 MREEAMRSLDLEADLRRAINNRDFVPFYQPIVRLSDGEVVGHEALLRWQHERRGLLLPGA 654

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +I+ ++  + E++   +            ++ +N++ +     E  + +  
Sbjct: 655 FLELGEESGLIEQVDWLIYEQVIAGLAR------GGEGYVSVNVSPRHFRSAEFSDRLFG 708

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+      P R++L  +E  ++ +   +  +L  LR+ GI + LDDFGT  S LSYL   
Sbjct: 709 LLDSCGADPRRLRLEITEVALLDDGPHTLRILQGLRERGIQVQLDDFGTGFSALSYLHRF 768

Query: 877 PFDTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           P  T+K + S + G      +   A++  ++ +A+ +    I + I  +   + L  +GC
Sbjct: 769 PISTLKIDQSFIAGLHGPEVQSTRALVEGVLSLARTLGIETIGEGIETDAQRQTLRELGC 828

Query: 933 DYIQDSHVASPLG 945
           DY Q   +  P  
Sbjct: 829 DYGQGYLLGRPAP 841


>gi|330445614|ref|ZP_08309266.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489805|dbj|GAA03763.1| diguanylate cyclase domain protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 658

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/549 (22%), Positives = 240/549 (43%), Gaps = 27/549 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R  LA     ++   +D   D V+         G         + N   ++  +D     
Sbjct: 116 RCELAFSDCANLALLFDEHGDLVSANNVFTKNYG-------NDLHNLASFVGDSDIAR-- 166

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +++ +  +  +     R+        W  I  + +++ +  +L+ +    +IT++K++
Sbjct: 167 QWIENAIINQDLKHS---RLCWTGQSHIWFNIEAKWLADKSQLLLQIV----NITKEKEN 219

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
           L+    NA  D LTG+ NR+     L      ++   +L   ++ +D+D +K +ND  G 
Sbjct: 220 LQRERYNAEHDFLTGLMNRRGISSAL-----KASHHFSLPYNLLFLDLDSFKLVNDTYGH 274

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD +L ++  R+ + +K   ++AR  G+ F I +   N    +      +  ++  P 
Sbjct: 275 AVGDKLLRAVAIRLLDTVKCRGLVARFGGDEFIIQIEERNTPN-LELLTREIITALNRPF 333

Query: 646 NLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            +    EI++  SIG A +     T   ++  A++AM+ AK  G N    F+     +  
Sbjct: 334 YIKNIGEISIGCSIGTAQYPKDADTFETLITQADMAMHCAKKHGRNCSYHFQPHLAETLY 393

Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  L  A+E  +  L Y PII L    + G EALI+W     G++S +EF+ +AE
Sbjct: 394 RKNALRHHLSQALEIKDFQLYYQPIIDLSTMMLKGFEALIRWYDDSLGHVSPAEFIPLAE 453

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  I  ++L +    +  W ++     + + IN++   L    L E +  +I +  
Sbjct: 454 ETGQIVPIGSWVLRKACEQLAEWNEKY-DTKLIMSINLSRAQLK-LSLVEELVLIIEEYN 511

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS+I L  +ES ++     ++  L  +  +G  L LDDFGT  S LS L  +P  TVK
Sbjct: 512 IDPSQIALEITESAMLQEFSEAKPCLDAIAALGFELYLDDFGTGYSSLSQLQNLPISTVK 571

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + S +    +   AI+ +   +   +   ++A+ I  +  +  +     +Y Q  +   
Sbjct: 572 LDQSFVQNEQDSGKAIVEATKAICNKLNLKVVAEGIETKQQLDYIQSCNFNYCQGYYFNK 631

Query: 943 PLGFNSILK 951
           PL    +  
Sbjct: 632 PLSVQDLEN 640


>gi|28901031|ref|NP_800686.1| hypothetical protein VPA1176 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879881|ref|ZP_05892236.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308095047|ref|ZP_05903052.2| sensory transduction protein kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308126016|ref|ZP_05778700.2| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|28809544|dbj|BAC62519.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086539|gb|EFO36234.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091807|gb|EFO41502.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308114867|gb|EFO52407.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 763

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 218/438 (49%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ E +L  A  D+LT +PNR+     +   +       +   T+M IDID +K +ND
Sbjct: 325 EHETKERLLYQACHDHLTRLPNREYLRSNIQRWM----CGSSNPFTLMFIDIDNFKSVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+VL  ++ R+        ++ R + + F  I+ +  +   I D A  + +++
Sbjct: 381 THGHEFGDEVLKQISTRLNHFSGEGRLIVREASDEFIFIV-NRTDEETIKDLASELIQTL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P N+ + +  ++ SIG A +         +L +A++AMY AK +  N    F      
Sbjct: 440 SKPYNVNDNQFLLSCSIGIAFYPMHGDNLDALLLSADIAMYQAKKQ-RNAYSLFNQEMQA 498

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S    +  ++ L LA+E   L++ Y P + + + +I G+EAL++W+  + G +  +EF+ 
Sbjct: 499 SHLHKMKVEQRLRLAIEKQTLFMAYQPQLNI-NGKIYGVEALVRWEDEELGKVPPNEFVP 557

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +   ++E+   D+          PI + INI+ K  L  +  E + A + 
Sbjct: 558 VAESSGLMVRLGELIIEKSLEDMGLLTTHLA-TPIQMSINISVKQFLHAKFIERLMAAMD 616

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K     +RI L  +E++ + + E+      RL  +G  ++LDDFGT  S LS L  +P D
Sbjct: 617 KYHLDCNRITLEITENLFIEDLEKFSPTCERLHALGFKISLDDFGTGYSSLSMLRTLPID 676

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +      + A  ++++II + KN E  ++A+ +  +    +L   GCD IQ 
Sbjct: 677 EVKIDKSFVDNIEHDKKALNMVKNIIAIGKNFEMKVLAEGVETQRQRDQLEACGCDLIQG 736

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL F+ ++  +K+
Sbjct: 737 YFYSKPLSFDQLVSFVKD 754


>gi|257796212|dbj|BAI39460.1| putative cyclic-di-GMP phosphodiesterase [Gluconacetobacter
           intermedius]
          Length = 779

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 210/439 (47%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  +   +   A  D+LTG+ NR +    +  I+       N    + ++DID+++ IN
Sbjct: 295 EQHATKTHLTQLARYDSLTGLLNRGALHRVMEDIIAQP---GNRTLAIFMLDIDRFRDIN 351

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D  LV +  RI  + K   +++R  G+ F +++       +I + A  + ++
Sbjct: 352 DALGHVYADQFLVEIAGRIRSIAKDDYVISRSGGDEFVVVVPDCEGK-RIEEIAHKLLET 410

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P+ + +  ++++ SIG +++ ++   S  +L +A+ AM  AK  G        +   
Sbjct: 411 IGRPLQIGQNTLSISCSIGISTFPANGPDSESLLSHADTAMRQAKEDGRGIFRFANLEKN 470

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR+++   L  ++    L L Y P +R    E+ G+EAL +W HP  GNI  S F+
Sbjct: 471 QVAQDRLVLGSALRDSLAQGMLQLHYQPQVRTHTLELSGVEALSRWHHPHLGNIFPSRFI 530

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R I+ W       P  + +N+++    +  L E + AL+
Sbjct: 531 AVAEETGQIEAIGRWSLLEACRQIVKWDRDGIHVP-TVAVNLSAVHFRNRALPEHIAALL 589

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  +R+ +  +ESV+M N   +  +L  +R +G  L++DDFGT  S LS L  +P 
Sbjct: 590 KDHDLKAARLTVEITESVMMDNSRDTEEVLQSIRNLGCGLSMDDFGTGYSSLSRLTRLPL 649

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  ++I +   +  T++ + +  E     L ++ CD +Q
Sbjct: 650 TEIKIDRSFINDFEYDTNAQAVTMAVIGIGSRLGMTVVTEGVETEQQRDLLEKLNCDVMQ 709

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL    + + +++
Sbjct: 710 GYLFAKPLAPRDLEQWVRK 728



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 64/193 (33%), Gaps = 12/193 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +     +   S+      E    AV  + D         + +       ++ G+    + 
Sbjct: 1   MTAKKDSTQMSEITALTTEILLPAVEQAIDATVIIGQDNEIIFYNQAAESLWGIPRAEVM 60

Query: 447 GPIRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
           G   + L      H +DR  +          R      E     AD ++    + +  + 
Sbjct: 61  GRNVDCLVPVRLRHEHDR--YIDRNRESGHNRIVGTSREVEFTRADGEYICGELSLSKVQ 118

Query: 503 SNSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + +G  +  Y+G+  ++TE+ +  + ++     D L  + +    +  L  ++      
Sbjct: 119 IDKDGRKLTYYMGVMKNVTEESQRRKILILQ--NDVLQALAS-DMLIQDLGELICRKVEA 175

Query: 562 --DNLRPTVMVID 572
              N    ++V+D
Sbjct: 176 FVPNSVAALLVLD 188


>gi|227820477|ref|YP_002824448.1| GGDEF/EAL transmembrane sensory box protein [Sinorhizobium fredii
           NGR234]
 gi|227339476|gb|ACP23695.1| putative GGDEF/EAL transmembrane sensory box protein [Sinorhizobium
           fredii NGR234]
          Length = 833

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 250/571 (43%), Gaps = 18/571 (3%)

Query: 391 LATGYFSQG--IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           +      +   +    ++ +     +   ++  D        +       G    ++ G 
Sbjct: 251 MQGRLAQEENDLKRAHQKTTRIYNLTPAKLYSIDDDDRLTAVSDYWLLATGYHRQAVLG- 309

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R++  ++    R  ++                  + R AD +   ++I+    +   G+
Sbjct: 310 -RHFANFLDPATRPAYQNR-KRQATEDVEAATVTVKFRCADGRLIDVLIK-EVQALEAGE 366

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            L  + +  D+TE K + E     A  D+LTG+ NR  F   L   +  +A D       
Sbjct: 367 TLS-LAVMTDVTELKTAEERNHVQAITDHLTGLLNRPGFEMALDGAIRQAAADGG-ELAC 424

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID+D++K IND LG A GD+VL  +  RI   ++  D +ARL G+ F +++ +     
Sbjct: 425 LLIDLDRFKPINDNLGHAAGDEVLRQIAGRIRAQVRGEDRVARLGGDEFVVLIPAAKAES 484

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                +  +  + A P+ +    ++++ASIG A + +   T++E+L+ +++AMY  KH G
Sbjct: 485 AALQISARIAAACAEPVIVDGSALSLSASIGIALYPAQARTAAELLQKSDMAMYARKHNG 544

Query: 689 GNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N  + F         +++ I+  +   +      +   PI+ L   ++ G EAL++ +H
Sbjct: 545 KNGAKLFDPLIASLAQEKLKIETYIEEGLRQDWFDVHLQPIVDLKRGQVAGFEALMRLNH 604

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +  ++ + +AEE   I  I   + E+    +        +   ++ +N++     
Sbjct: 605 PEHGVLPPTDIIRVAEETGAILRIGERIFEKAVAHLARLSSVPGLENAYLAVNVSPLQFC 664

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L   + A + K   +P+RI +  +E+V+M +    R +LG L   G+ + LDDFGT 
Sbjct: 665 -PKLPASIFATLMKWGITPTRIVIEITEAVLMHHSPDIRDILGALSGAGMKIALDDFGTG 723

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR-------IAILRSIIPMAKNIETTIIAKDIY 919
            S LSYL + P + +K + +     T++          ++  I  +AK +   ++A+ I 
Sbjct: 724 YSSLSYLVHFPVNIIKIDQAFTRSLTDESETVRRRVQKLIAGIHMVAKEMNCHVVAEGIE 783

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +  ++ L  +     Q   +  P     IL
Sbjct: 784 TDAQLRALLSLKVGRGQGYFLGRPQPVGDIL 814


>gi|182435813|ref|YP_001823532.1| putative phosphodiesterase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464329|dbj|BAG18849.1| putative phosphodiesterase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 763

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 216/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  + L+ +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 275 LRDPLTGLPNRQWLLERTWSALEDA-ESIGTRSALVLIDLDRFRAVNDTLGHLAGDRLLL 333

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +   ++ P++L    + 
Sbjct: 334 QIAERLRLALPRGAEAARLGGDEFAVLLPHTDSTTSAQQVARHLVAELSSPLDLDGLTLV 393

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 394 LEASAGVAVYPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 453

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 454 RALDAGEVELHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 512

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+       G+ A +++       ++L  
Sbjct: 513 YVLETALAQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGGVAARLARHGVPAGALQLEI 570

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 571 TEHVLLEDPQRAADTLAGLTAHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 630

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  I +A ++   ++A+ +  +   + L  + CD +Q   VA+ +      
Sbjct: 631 VDHEDAEIVRCTIDLAHSLGLVVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPQETT 690

Query: 951 KLLKER 956
             L+ R
Sbjct: 691 AWLRAR 696


>gi|170742335|ref|YP_001770990.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
 gi|168196609|gb|ACA18556.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium sp. 4-46]
          Length = 789

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 140/621 (22%), Positives = 266/621 (42%), Gaps = 31/621 (4%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGG-------LVLIVILIGFTVIQHVLATGY 395
             +++    +  ++     +  D+    L          +V +  L+   V+   LA   
Sbjct: 173 GSLVLVCAGLARYLGQRNLVHQDLPHQGLAALSDDGIAPVVGVASLMLLAVVLATLAVDR 232

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++      +        S + +   D     VT    +A +LG  +  + G        
Sbjct: 233 QARRRREQQDLARSLADASIEGIALCDGD-RIVTANTSLAALLGCPAERLRGRRLG--DL 289

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +    +          V            +     +       +RP++   G   R + +
Sbjct: 290 LEGEGQARLDAAEGRAVA---------VTLVGGRGERVAAEAALRPIT-VAGRPHRALAV 339

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+T + ++   I      D LTG+PNR  F +RL   +  +A        V+ +D+D+
Sbjct: 340 -RDVTARLEAERHIQYLVHHDALTGLPNRARFNERLEGAVAEAARGARG-LAVLCLDVDR 397

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND  G A GD  L  + R +   L    +LARL  + F ++        +++  A 
Sbjct: 398 FKEVNDTCGEAAGDAGLRLIVRWVERALAEDQVLARLGADEFAVLAPGLEREHEVSGLAE 457

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++   I        +T SIG A +      ++ ++  AE A+   K +GG+    F
Sbjct: 458 RVLAALRPEIWRESGLPALTLSIGAALFPRDAQDAAGLMSRAEAALAAVKAQGGDGFRIF 517

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           +V   +   +R  ++ DL  A    E  LVY P I +    +VG EAL++W HP+ G + 
Sbjct: 518 KVGLGAELRERRGLEHDLRQAARRGEFALVYQPQIDVASGRVVGFEALLRWTHPERGQVP 577

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ IAEE   I AI  ++L ++ R+   W       P+ + +N++   L   +  + 
Sbjct: 578 PDRFIPIAEETGSILAIGEWVLRQVCREAAGWES-----PLRVAVNVSPVQLHHPDFAQV 632

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q ++ +T   P+R++L  +E+ ++  P R+ + L RL+ +G+ + +DDFGT  S LS L
Sbjct: 633 VQEVLHETGLDPARLELEITETALVREPARALVTLRRLKALGLRIAMDDFGTGYSSLSNL 692

Query: 874 GYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + SL+    E R   AILR+++ + + +   ++A+ +    ++  L    
Sbjct: 693 RVFPFDKIKIDRSLVRAVDENREAAAILRAVLGLGRGLGLPVVAEGVETLAELAFLDTEA 752

Query: 932 CDYIQDSHVASPLGFNSILKL 952
           C   Q   +  PL   +  +L
Sbjct: 753 CQEAQGYLIGKPLPIEAFGEL 773


>gi|221124398|ref|XP_002163774.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 429

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 194/417 (46%), Gaps = 11/417 (2%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           + RL T +  +A        ++ +D+D +K +ND LG   GD +L  +  R+   ++  D
Sbjct: 1   MGRLETAM-HAALSTGHLGALLFVDLDDFKTLNDTLGHHQGDILLQQVANRLQSCVREAD 59

Query: 608 ILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
            +ARL G+ F ++L   +      S +    A  + +++  P +L     + T S+G   
Sbjct: 60  TVARLGGDEFVVMLEGLSKDVAEASTQAEAVAGKVMQALNQPYDLGTLTRSSTPSVGITV 119

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
           +   + +  E LK A+LAMY AK  G N    F   +  +  +   ++  L  A+E  + 
Sbjct: 120 FGKQQESLDEPLKRADLAMYQAKAAGRNTSRLFDPKTQAAVTLRADLEAALRTALEEEQF 179

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   P I   D  + G EALI+W HP  G +   EF+ +AE+  MI  I  ++L    +
Sbjct: 180 VLYLQPQIS-EDVRVTGAEALIRWQHPTRGLVMPGEFIAVAEDCGMIVPIGNWVLNTACK 238

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +  W  Q     + I +N+++K    ++  E +   +S+     S +K+  +ES+++ N
Sbjct: 239 QLALWATQPAFAHMTIAVNVSAKQFHQHDFVEQVLDALSRHGAQASGLKIEITESMLIAN 298

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            +   + +  L+  G+   +DDFGT  S L+YL  +P D +K + S +          AI
Sbjct: 299 VDDVIVRMEELQHHGVGFAMDDFGTGYSSLTYLKRLPLDVLKIDQSFVRDVLVDTNDAAI 358

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              I+ +A ++  ++IA+ +     ++ L R GC   Q    + P+        L +
Sbjct: 359 ANMIVALANSMGLSVIAEGVETVEQMQYLARHGCHAYQGYLFSRPVPVERFETSLAD 415


>gi|325277945|ref|ZP_08143482.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324096919|gb|EGB95228.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 683

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 219/446 (49%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL       + R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQH-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 290 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   + +P +L  ++I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEVPFDLDHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++LYLVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGM 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I +I  ++L++  R +  W D      + + +N+++  L  +EL 
Sbjct: 470 VPPDQFIPLAEQNGSIISIGEWVLDQACRQLREWHD-LGFSDLRMAVNLSTVQLHHSELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIIA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 QGCHEGQGYHYSKPLSARELTHFLKQ 674


>gi|237798210|ref|ZP_04586671.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021062|gb|EGI01119.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 712

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/581 (19%), Positives = 248/581 (42%), Gaps = 11/581 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++  A    SQ + S     +  +    + +   +         P I  +L  +   + G
Sbjct: 135 RNRRALQQLSQELESARAFNASVLSNVAEGILVVEETGLISFANPAICQLLNASVEQLRG 194

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                   +     +   +              ++  +R A      + +    +     
Sbjct: 195 TRVLDY-IVEPQVGEWLDSGFYQHYRKSDTYRVHDAVLRTAQGAQLPVALSCAALPAEQ- 252

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                +    D++  +   + +   A  D LTG+ NR+     + ++L  +   D     
Sbjct: 253 --KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNEQADKY-LV 309

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D +K+IND LG   GD VL+ + ++  + ++  D+LAR+ G+ F +++   +  
Sbjct: 310 VLFMDLDGFKQINDALGHDAGDQVLLWVAQQFKDCMRPYDVLARVGGDEFTVVIDGLDYP 369

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            + A  A  +   ++    +   +ITV AS+G A++         +L+ A++AMY AK  
Sbjct: 370 EQAAKIAEKLIDRVSGRRQVDGVDITVGASVGIATFPDCGSNLDGLLRAADIAMYEAKRA 429

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      +  +       R+M++E +  A++  +  +VY P I ++D  + G EAL++W 
Sbjct: 430 GRQQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQINMVDGRLRGFEALLRWQ 489

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +  + F+ + EE  +I  +  ++ ++ A     W        +  +  ++    
Sbjct: 490 HPAVGEVPPALFIPLLEETRLINRLGGWIFDQGAEQRQIWSGVFASDVVVSVC-VSPTQF 548

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L   ++  + +    P ++++  +ES ++ N   S   L  L  IG+ + LDDFGT
Sbjct: 549 CMPNLASELKRAMDRFELEPGQLEVEITESSLVNNLTHSHKQLSLLHDIGVRVALDDFGT 608

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
               LS+L  +  DT+K +   +     +++  A+ RSII +++N++  +IA+ +     
Sbjct: 609 GECSLSHLRNLQLDTLKLDRRFVANIVGSKRESALARSIIDLSRNLDMLVIAEGVETHEQ 668

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKNT 963
            + L   GC  +Q   ++ P+  +  ++       P +K  
Sbjct: 669 YQWLADNGCQIVQGFLISHPMVADDAVQFPAHFELPALKRA 709


>gi|302554332|ref|ZP_07306674.1| integral membrane phosphodiesterase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302471950|gb|EFL35043.1| integral membrane phosphodiesterase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 1004

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/851 (18%), Positives = 325/851 (38%), Gaps = 63/851 (7%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNR 214
           P     F +  + P +  + ++                  +IG + L   +         
Sbjct: 129 PSYADLFFLCFAPPAIVGLLVFAKRPVTKAGWVCLGLDAWLIGGSLLTLAWSLAL--AQA 186

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           +    P  A   + L Y  +D   +S ++ L      + R+    A+ +  +  +   L 
Sbjct: 187 AKSEGPGVAHTALSLAYPLLDIALVSMVLALHFRRSAVNRSAVNTAIGALALTVMCDALF 246

Query: 275 WN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTA-----SIARITLASIVLYYTYFI 326
            +       + G +  +G    ++L   + +    T         R T     + + +  
Sbjct: 247 TSPLLHHDYRSGQLLDAGWFAGSLLLAYAPWAASRTPDADRVGPDRHTAGHTRVVHEHVP 306

Query: 327 IYHGMKGYERAVL-------------------LIPAWILIFIWFIGLWMAITKRLDNDII 367
                  +  ++                    L P           L+  +  R  + ++
Sbjct: 307 GQRSGPHHHPSLPAGEHSRYPAARPIAGSLAALTPYLAAAVCTLGILYNVLNGRSVDRVV 366

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              L GG V++ +++   ++  +L     +Q +          V GS D++         
Sbjct: 367 L--LTGGTVVLALVVRQGIM--LLDNITLTQELAQKENHFRSLVQGSSDVIMIAAPSGVL 422

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFR 484
              +P  A + G  +  + G        IH  D       +  F+          + E R
Sbjct: 423 RYVSPAAAGVYGRPAEELVGT--ELANLIHPQDLGCVVHEVRRFLAADPVEEPTTRIECR 480

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            R+   +  W+ +      +  G I      + D+TE+ +    +  NA  D LT +PNR
Sbjct: 481 FRS--GEDAWLNVESTVNRHHGGLIFN----SRDVTERVRLQAQLQHNAEHDPLTDLPNR 534

Query: 545 QSFLDRLTTILDLSATDDNL----RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
             F  R+   L      D         V+ ID+D +K +ND +G   GD++LV   RR+ 
Sbjct: 535 ALFTKRVQHALSGRRACDRGVALRNTAVLFIDLDGFKAVNDTIGHQAGDELLVQAARRLH 594

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLK------IADFAIAMRKSIAMPINLLEREITV 654
           E ++  D  +RL G+ F  +++ +N   +      I + A  +R +++ P  +   ++ V
Sbjct: 595 ESVRQGDTASRLGGDEFAALIVGDNTRDREARQRHILELADRLRTTLSQPYLIDGNDVRV 654

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
            ASIG A +    + + E+L+NA+LAMY AK  G   VE ++    +       +   L 
Sbjct: 655 NASIGVA-FAEQGLGAGELLRNADLAMYRAKAGGKGRVELYKPQMQQDVVRKAELATRLR 713

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + E  L++ P++ L D  I  + A  +W   +    + +EF+ +AE+      +  
Sbjct: 714 AALHDGEFALLHQPVVCLTDGRITSVSAQARWRSSQGVLFTPAEFLRVAEDSDKTAELGR 773

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLS 831
           +M+E                P+   + ++++ LLD  +    ++AL+++       + + 
Sbjct: 774 WMIEEAVEQAAERHATGLSVPVV--VRMSARRLLDRSMPLGTIEALLTRHGLPSGSLIIE 831

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            S+     + +     LG LR++G+ + LD FG+    ++ L  +P D +K +  L+ G 
Sbjct: 832 LSDIDPRVSLDELERRLGSLRRVGVRIALDGFGSGYGAITTLRRLPVDVLKLDRGLVDGV 891

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            E      I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    +
Sbjct: 892 VESARLYKITSGLLRIANDLGLKTVADGVDLPEQVVALRAMGCTHGQGMAFSGPLDEYRL 951

Query: 950 LKLLKE-RFPL 959
            + L    +P+
Sbjct: 952 RRALTSGHYPV 962


>gi|86358251|ref|YP_470143.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86282353|gb|ABC91416.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 548

 Score =  433 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 141/554 (25%), Positives = 251/554 (45%), Gaps = 31/554 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVT---TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            LA+  +  I W   I R         P +  +LG A  +      ++       D+   
Sbjct: 8   RLALEKTEAITWGL-IDRLLFFDRDFNP-VEHLLGNALPASVKAAASFWELFPELDKSAV 65

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                S      G      R+  A    H +   I  +    GD+   +     + +++ 
Sbjct: 66  MLAFRSL-----GDSTQPLRITGALGGSHDL--TIYRI----GDLFAVVRSEEHVDDERA 114

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +L   L  A  D LTG+PNR+ F + L+ +L  +A       ++M +D+D +K +ND LG
Sbjct: 115 TL---LHLATHDPLTGLPNRRQFSEDLSALLQETAGSSET-LSLMQLDLDDFKPVNDTLG 170

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD +L S  RRI   L   D   RL+G+ F +I +   +  K    A  +  +   P
Sbjct: 171 HAAGDKLLQSAARRIQACLSSDDRAYRLAGDEFTVISVGGGHPAKAHRLAEDLVAAFKKP 230

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +    + V  SIG ++      +  +++K ++LA+Y AK  G    +++  +      
Sbjct: 231 FTIDGIALFVGTSIGMSTAPPDGTSPEQLMKASDLALYDAKKEGRGRAKAYDPAMLELLE 290

Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                   L +A+E  + Y+ Y PI       IVG EAL++W HP  G I  + F+ +AE
Sbjct: 291 QRELLRRSLRMALEQQQFYVEYQPI--AEGGCIVGFEALLRWHHPLLGIIPPAAFIPMAE 348

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              M+  I  ++LE+  R+ + W +        + +N+++ + L + L + +   +    
Sbjct: 349 ADGMMPDIGAWVLEQACREAMKWPENYL-----VAVNLSAAEFLTSGLTDRISHTLDLVG 403

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R++L  +ESV++     +   L  L  +G+ ++LDDFGT+ S LSYL   PFDT+K
Sbjct: 404 LPPERLELEITESVLLERTVNNIDTLNTLNLLGLRISLDDFGTEYSSLSYLKTFPFDTIK 463

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +T         AI+R I+ +A +++  + A+ +      + L  +GCD +Q   +
Sbjct: 464 IDKYFITDLETDLKSQAIVRCIVNLAHDLDMQVTAEGVETPGQAEWLHSVGCDRLQGYLL 523

Query: 941 ASPLGFNSILKLLK 954
           + PL   +I + +K
Sbjct: 524 SRPLPVEAIDEFIK 537


>gi|260221800|emb|CBA30724.1| Uncharacterized signaling protein PA1727 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 665

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 216/413 (52%), Gaps = 6/413 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+       +   AF D LTG+PNR  F+D +   +  +  +   +  +  ID+D++K +
Sbjct: 240 TQLGNKNAQLQQMAFYDQLTGLPNRSLFIDLVQREMLSAQRNQQ-QFGIFFIDLDRFKAV 298

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G A GD +L+ + RR+ E+L+  D++ R SG+ F +++    +   + + A  + +
Sbjct: 299 NDSMGHAAGDALLIEVARRLREVLREVDVVCRQSGDEFLVLVRDIEHWESLGEMAQRVLR 358

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           SI  P+ L    + V+ASIG + +         ++K+A++A+Y AK  G      F    
Sbjct: 359 SIEAPVVLANAPVKVSASIGISLYPEDGQDFETLVKHADIAVYQAKTLGRARYSYFHSEL 418

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S     + ++++L  A+ + +L L Y P +     E+V +EAL++W HP  G +  ++F
Sbjct: 419 NSRLQANLELEQELAYAIGHDQLVLHYQPQVCAKTGEMVAVEALVRWQHPTRGLLYPAQF 478

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE   I  + ++ L    R +  W  +       + +N+++ +  D+ L + +QA 
Sbjct: 479 IGLAEESGRIAEMGVWTLREACRQLADWSARGIHIG-NMAVNVSALEFRDHRLLDSLQAA 537

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P R+++  +ESV+M   E S+ ++ RLR+IG+ + +DDFGT  S L+YL  + 
Sbjct: 538 LDASGIPPQRLEIEITESVLMAETETSQRIIERLRQIGVGIAIDDFGTGYSSLAYLKRLR 597

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            + +K + S +    +     AI++ ++ +A+ +   ++A+ +  E       
Sbjct: 598 PNQLKIDRSFVNDTATDSDSRAIVKGVVGLAEALSLNVVAEGVETEEQRAFCR 650


>gi|329904308|ref|ZP_08273755.1| hypothetical protein IMCC9480_1973 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548032|gb|EGF32767.1| hypothetical protein IMCC9480_1973 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 577

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 231/499 (46%), Gaps = 17/499 (3%)

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +L   +  +R   +    +R  D     +++ +     +      ++G   D +  +++
Sbjct: 71  EVLSLLIDGQRCHAEVTS-LRGPDGIIQGIMLVVFDNFRAASSPGGFVG---DRSADEEA 126

Query: 526 ------LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
                  + I   A  DNLT +PNR    DRL   +  +      +  V+ ID+D +K +
Sbjct: 127 ASSLAHHQRIEFLATHDNLTALPNRTLLGDRLKQAISQARRTKQ-KVAVLFIDLDGFKNV 185

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG AVGD +L     R+   ++  D LARL G+ F  +L + +    +   A  +  
Sbjct: 186 NDSLGHAVGDRILKQAAARLLRCVRDADTLARLGGDEFVAVLGNVSLPD-VIRVANRIVS 244

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S+A   ++   ++ ++AS+G A +       + +L  A+ AMY AK  G N  + F    
Sbjct: 245 SMANAFSINNSKLNLSASVGIAMFPEDGSDGASLLGVADSAMYLAKQYGRNQYQFFASEM 304

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  ++ DL  AV   +L +VY P + +    IVG EAL++W  P  G+I  S F
Sbjct: 305 KEQALQRNQLESDLRHAVAAGQLRMVYQPKVDIGSGRIVGAEALLRWCDPVLGDIPPSCF 364

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE   ++ AI   +  ++   I  WR +  + P  I IN++   L D +  + +  +
Sbjct: 365 IPIAENCGLMGAIGGQVFGQVLAQIALWRGRGIVVP-RIAINVSGHQLRDADFVDKIAGM 423

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I++       I +  +ES +M   ++    L +L KIG++L++DDFG   S L+ L  +P
Sbjct: 424 ITQARVPAESIGIELTESALMERFDQVLEHLLQLEKIGVTLSIDDFGIGYSSLAILHKLP 483

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S + G T   +  +I R++I M   +   ++A+ +      + L+  GCD  
Sbjct: 484 IHELKVDRSFIEGMTDQPELRSIARTVIGMGHALGVRVVAEGVETTAQRELLSEDGCDIA 543

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q      PL     +++L 
Sbjct: 544 QGFLFFQPLEPEDFVRVLA 562


>gi|296117419|ref|ZP_06836007.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976021|gb|EFG82811.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 728

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 205/442 (46%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + EQ ++ + I   +  D +TG  NR      L T++ L       R  V +IDID+++ 
Sbjct: 290 VIEQHEARQHISQLSNYDPVTGFLNRSVVHRMLKTMITLPNES---RFAVYMIDIDRFRD 346

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  L ++  R+  L +   IL+R   N F II+ +      ++DFA  + 
Sbjct: 347 INDALGHVHGDGFLKAVAERLKRLSRSNYILSRSGANEFIIIVPNVT-ESTVSDFARKIM 405

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES--FR 696
             +  PI +   +I  T  IG + +         +L  AE AM +AK +G          
Sbjct: 406 DCLREPIEIAGNQIVGTVGIGISQYPQHGPDGESLLSYAEQAMRNAKKQGPGTFRVASSE 465

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +    DR+++   L  ++ +  L L Y P +      I G+EAL +W+HP  GNI  S 
Sbjct: 466 DNKAAQDRLVLGLALRESIADGLLTLHYQPQVESSTGMIYGVEALSRWNHPTLGNIYPSR 525

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE   I+AI  + LE+  R + +W       P  + +N+++    D  L E +  
Sbjct: 526 FIAVAEETGQIEAIGKWSLEKAVRQMTTWDRAGIHVP-TMAVNLSAGHFRDRLLPEYLAN 584

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+        R+ +  +ESV+M   E +  +L  +R +GI L++DDFGT  S LS L  +
Sbjct: 585 LLRDHGLPAERLTVEITESVMMEENEETMSVLAAIRNLGIGLSMDDFGTGYSSLSRLTRL 644

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +          A+  ++I +   +  T++ + +        L  + CD 
Sbjct: 645 PLSEIKIDRSFIMNLDHDANAQAVTTAVIGIGSRLGMTVVTEGVETTQQCTMLKNLNCDV 704

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q    A P+    + + ++ R
Sbjct: 705 MQGYLFARPMPPEGVEEWVRAR 726



 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 10/174 (5%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILD 469
           +  + D V   D     V        + G +   + G   +  +P I+    D++     
Sbjct: 24  LEQASDGVVIIDDRNMVVFFNTAAEHLWGYSKEEILGKNVSCLVPSIYRQQHDSYIDANR 83

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ--KKSLE 527
                +      E    +    +    + I            Y+     +TE+  +K L 
Sbjct: 84  RTGINKIVGTSREVTFESKAGDYISGEMSISTALIGPEKKRYYMAFMKGVTEEGHRKRLL 143

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD--DNLRPTVMVIDIDKYKKI 579
            +  + F   L+G     + +  +  ++         N    +M++D D + +I
Sbjct: 144 DLQNSVFH-ALSG----DTMIQDVADMICQEVEGFVPNTVAVLMLLDEDNHLQI 192


>gi|186685350|ref|YP_001868546.1| diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC
           73102]
 gi|186467802|gb|ACC83603.1| diguanylate cyclase/phosphodiesterase [Nostoc punctiforme PCC
           73102]
          Length = 570

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 221/439 (50%), Gaps = 7/439 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             K  E I      D+LTG+PNR  F DRL  IL     +  L   V ++ ID +  ++ 
Sbjct: 124 LHKLDELIHQITNYDDLTGLPNRDLFRDRLHQILSQPENNQRL-VAVFLLSIDDFTGMSH 182

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            L     + +L ++ +R+ +     D+LA L G+ F +  +  ++   +   +  +  ++
Sbjct: 183 GLDHQTTNLLLRAVAKRLLDCTAQTDVLAYLKGDEFALARMDIHSLESVIKLSQVLLSNL 242

Query: 642 AMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           + P ++    I +T SIG      +   + +++L+ A +A+Y AK +G +  + +     
Sbjct: 243 SKPFSVEGNLIHITVSIGITLNNLTDPNSVAQLLQQAHIALYQAKQQGRSQYQFYSPEIN 302

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++ +L  A+E  E+ + Y P+I L   +++ +EALI+W HP  G +S  +F+
Sbjct: 303 AQLQERLTLENELHGALERGEMLVYYQPLIDLHSGQVIAMEALIRWQHPTLGLVSPVKFI 362

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE    I  I  ++L        +W+  A   PI I +N++S+      L E +  ++
Sbjct: 363 PIAEANGAIVPIGEWVLRTACAQTRAWQ-LAGFTPIRISVNLSSRQFEQPYLVEIVNQIL 421

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T    S ++L  ++S +M + +RS   L +LR++GI L LDDFGT  S L+YL   P 
Sbjct: 422 EETGLQASSLELEVTKSFLMADIDRSVKTLKQLRELGICLALDDFGTGYSSLNYLKRFPV 481

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +    S     A+  +II +AK++   I A+ +  +  ++ L   GCD  Q
Sbjct: 482 NMLKIDKSFVQDVMSNPDSAAVTNAIIALAKSLRLKITAEGVETQEQLEYLKMRGCDEGQ 541

Query: 937 DSHVASPLGFNSILKLLKE 955
             + + P+  + I  +L++
Sbjct: 542 GFYFSRPVPADIIAPMLQK 560


>gi|320157811|ref|YP_004190190.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319933123|gb|ADV87987.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 753

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 202/428 (47%), Gaps = 10/428 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR+ F D L  IL       +    ++ +DID +K+IND LG  V
Sbjct: 322 QLKKLANTDMLTGLDNRRKFTDVLNQILQKPDALAHCH-ALLYLDIDNFKQINDQLGHYV 380

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  + +R+   +     + R+SG+ F ++L        +     A+  +++ P   
Sbjct: 381 GDQVLKVVAQRLCHHVSDAQSITRISGDEFAVLLEY-QEIDSLKARLSALIVALSQPSEH 439

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
           +     +T SIG           + ++++ + AMY AK +G N    F   +     +++
Sbjct: 440 IPNSHRLTVSIGVVLIPQDGQDLTLLMQHVDFAMYQAKSQGRNQYCFFDRLMKLRDDEKI 499

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            + E L +A+E ++  L Y PI  +   +I   EALI+W HP  G +  + F+ +AE+  
Sbjct: 500 QLIESLKIAIEQNQFVLHYQPIYDIRSHQIHCYEALIRWQHPTKGLLYPASFIELAEQSG 559

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I   +L +  + I      A   PI + INI++  L D +L E    +I +     
Sbjct: 560 LINEIGDCVLAQTCQFIAQ---AAPEKPI-VSINISASQLSDPQLFERFIGIIQQYGVDA 615

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +K   +E+ +M N +    +L + +++GI + +DDFGT  S L+ L  +P + +K + 
Sbjct: 616 HSLKFELTETTLMQNIQACTNILLKFKQLGIQIAIDDFGTGYSSLAVLKDVPANYLKIDK 675

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           + +SII +A +++  +IA+ +      + L +  CD+ Q      P
Sbjct: 676 SFIDQINSNTGDQKVAQSIITLAHHLDMQVIAEGVEQIEQEELLAQFQCDFGQGYLFGRP 735

Query: 944 LGFNSILK 951
              +SI  
Sbjct: 736 APLDSIRA 743


>gi|126462742|ref|YP_001043856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126104406|gb|ABN77084.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17029]
          Length = 779

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/633 (22%), Positives = 268/633 (42%), Gaps = 28/633 (4%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + A  ++    +   + +  +  +  ++P  +  L  +   +     +            
Sbjct: 125 LVAVPMLRHGVLAGRVLLGWQTASSDLRPEDLAALQSLAEAMHAAAERRESERLTTEAAA 184

Query: 401 FSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYI 456
               +R  L   +  S   +  +D     V    + A +LG  +  + G     +    +
Sbjct: 185 ALQEDRLLLESILRTSTSAILAFDADARIVFANDEAAALLGTDANRLPGCTLEGVGCRLL 244

Query: 457 HINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                      L     +   +        + AAD +   + I   P++      +R + 
Sbjct: 245 SREGEPLPPEALPVARAIAEGQTLRDLHHVLMAADGRQRILSINAAPVAAGAATAVRVVA 304

Query: 515 IANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +D+T         + +L      AF D LTG+ NR+  ++ L   L   A  +    +
Sbjct: 305 TIDDVTGQVSADSALRTALAEAHQLAFFDPLTGLYNRRGIVEVLRDCLQTCAR-EKAFLS 363

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D  +++N   G  +GD VL +L  R+  L +    L R+S + F  +   E + 
Sbjct: 364 LLYIDLDGMRQVNGTRGHWLGDRVLQALGARLDNLRQDGGDLGRISADEFV-LTCGETHP 422

Query: 628 LKIADFAI------AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 A        + +S+  P  +    + VTASIG A+ ++ + +   +LK  +LA+
Sbjct: 423 DAAGAVAAAEAEAERILESLREPFVVDGLTLEVTASIGLAAISA-EDSVEGLLKGVDLAV 481

Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVG 737
             AK  GG+   ++R    +    RV + ++L  A+   E  + + P++       EIVG
Sbjct: 482 MAAKAAGGDRACAYRADMEQDMVGRVALAQELREAIRRDEFRIYFEPMVSLGETGLEIVG 541

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+HP+ G ++   F+  AEE   I+ I+ ++L   A+++  W +      + + 
Sbjct: 542 QEALIRWEHPQRGLLAPIAFIPFAEETGFIRDIDRWVLRAAAQELARWAEDPARRHLGVS 601

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+S   L  E  + ++ ++ +T   P+RI+L  +E  ++ N   +R  +  LR +GIS
Sbjct: 602 INISSAQFLSEEFGQMVREVLDETGVDPTRIELEVTEGTLLSNLGLARTTMMDLRSLGIS 661

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL  +P D +K + S + G ++      IL  II +A  +   ++A
Sbjct: 662 IALDDFGTGFSSLSYLRDLPVDVLKIDRSFLGGLSDSKANRTILEGIIGLASGLGVALVA 721

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + +        L   GC   Q      P     
Sbjct: 722 EGVETPAQFAWLRAKGCRTFQGYLFGRPADEAQ 754


>gi|322434114|ref|YP_004216326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidobacterium sp. MP5ACTX9]
 gi|321161841|gb|ADW67546.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidobacterium sp. MP5ACTX9]
          Length = 820

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 144/817 (17%), Positives = 298/817 (36%), Gaps = 54/817 (6%)

Query: 169 NLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFY-----MVNRSSMLIPTFA 223
            L    LW      +   S   +R   +G   +L  F+++ +     +          + 
Sbjct: 12  ELLVFLLWS----MNRGRSDLRFRCWFLGWLLVLVHFISLLWHPAPGVSLLLRQAHIAYL 67

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM------------ 271
                L +I  D    + + +                 +  LI+F               
Sbjct: 68  EILAGLCFILSD---AAIINSKQRLIRGAVFGTLPALFTVLLILFSPADRWALGFSLVAT 124

Query: 272 -----YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
                +L +     ++          + +LF       +       I  +     +    
Sbjct: 125 HSVTFFLVYKYAGKRLQRFVPLM--TLCVLFAGWMLGALTVGRSELILASIPAEIFLINA 182

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +        ++   +       +W    +  I  R +  +         +   ++     
Sbjct: 183 LLFLQNYPLKSPGNLATITGFILWACSSFFTIAWRENGSLDTLFPSIIYLPQFLVAIGMT 242

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSM 445
           +  +   G  S+ +  +     +    + + ++ +D+     ++     A + G ++   
Sbjct: 243 LIVIEEDGAASRELAHE---YEVLFNNNPNSLYIYDLRTLRFLSVNSASARMHGYSADEF 299

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA--DNQFHWMIIRIRPMS 503
            G            D      + +     R G+ +   R   A  D     + +    + 
Sbjct: 300 RGKKLT--------DIVVGDALPEILDDIRTGQPRSNHRSLHARSDGTLIPLNVTSYNVR 351

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              G + R I +  D TE+++ L  ++  A  D LTG+PNR   L  L   +  S T   
Sbjct: 352 FR-GRLAR-ISLGEDQTEREQMLSQLIYQADHDLLTGLPNRHRLLQALDRAM-TSITPAA 408

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+++ ID+++KIN+  G  VGD +L  +T+ +   LK  D + R  G  F I+L  
Sbjct: 409 PGCAVLILQIDRFEKINENYGHPVGDALLKQVTQLLSSALKPTDAIGRTGGREFTIVLAG 468

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N       A  + +  A P+ + E  I V  ++G A +      +  + ++A  A   
Sbjct: 469 ILNGADAEGRAQNILELFADPLTIEEHSIEVAMNMGLAVFPEDSDDAVSLWRDAARAQAR 528

Query: 684 AKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           ++  G  G    S   S    +   I+  +  A++     + Y P++   + ++   EAL
Sbjct: 529 SRQLGVEGVVRLSRTHSLQAQEDSRIEAVMRRALQYGGFEVYYQPVLD-ANRKLCAFEAL 587

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++        +S +  + IAE   +I  +  ++L  + R + +W+    +  + I IN++
Sbjct: 588 LRLREEDGTMVSPAVCIPIAESTGLIIPLGRWVLREVCRQLKTWQ-LNGLQVVPIAINVS 646

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  ++    C  +   + +    PS I    +ES VM     +   + +L   G S ++D
Sbjct: 647 ALQIVLTNFCTDVDVALEEFDLKPSFIHFELTESSVMPRDSLALENMVKLATNGFSFSID 706

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L  +P   +K + + ++   ++     I+R+II MA  +   ++A+ + 
Sbjct: 707 DFGTGFSSLDRLHKLPVSVLKIDRTFVSRMLDQNGTLPIVRTIISMAHALHLGVVAEGVE 766

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E  ++ L  MGCD  Q    + P+       LL  R
Sbjct: 767 TEEQLQMLAEMGCDQFQGFLFSKPVEAARAAILLSPR 803


>gi|149908223|ref|ZP_01896887.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149808765|gb|EDM68698.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 831

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 212/439 (48%), Gaps = 8/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K +   +   A  D LTG+PNR S       IL      +     +  +DID +K +N
Sbjct: 392 KLKSANNAMSHMALHDPLTGLPNRASLDKFAQQILT---GGNEKYMAIAFVDIDNFKYVN 448

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G  VGD+++ +++RR  ++L   D++ R  G+ F       N   +IA     +   
Sbjct: 449 DLYGHTVGDELICAVSRRFEKILGTGDMVCRFGGDEFLFCFSGFNTQAEIATKVTKINDI 508

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               +   EREI    S+G + +     T   ++  A++A+Y AK +G   +  F     
Sbjct: 509 FNTKMRCGEREIKSNCSVGVSVFPDDGQTLEVLIGKADVALYKAKGQGKGRLCLFEAEFD 568

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +    +KE+L  A+E  E  L Y P +   +++++ +EAL +W+ P +G ++ +EF+
Sbjct: 569 AQLKRQRAMKEELYKALERDEFELHYQPQVNAKNKQVISVEALCRWNSPVFGQVNPAEFI 628

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+   I A+ L +++    +I+S         + + INI+   +++ +    ++ ++
Sbjct: 629 TIAEKCGAIHALGLSVIKIACDEILSI-SPNGNGALELSINISPIQIIEPDFFTDIKRVV 687

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    SR+    +ES  + +      L   LR+ G  L+LDDFGT  S LSYL  +PF
Sbjct: 688 KATGIDSSRVTFELTESAAIDSILSLSPLFHELRQCGFGLSLDDFGTGFSSLSYLSDLPF 747

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +     +++  A++++II +  +   T++A+ +  +    +L    CD +Q
Sbjct: 748 NEIKIDRSFIDKFLDSDQSDALVKTIIAIGNSFNMTVVAEGVETQAQYDKLRHYNCDLLQ 807

Query: 937 DSHVASPLGFNSILKLLKE 955
               A PL  N + + +  
Sbjct: 808 GYFFAKPLRLNELTQYISR 826


>gi|224373793|ref|YP_002608165.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589128|gb|ACM92864.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 686

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 111/430 (25%), Positives = 222/430 (51%), Gaps = 7/430 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D LTG+ NR+ F+ +L      S  ++  +  V+ IDID +K+IND  G 
Sbjct: 248 KHKLFIRANFDALTGLCNRECFMQKLKDAYYDSIRNNK-KFAVLFIDIDYFKQINDTDGH 306

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD VL  L  R+ + ++  D+++R  G+ F ++L   ++   +  +   + + I   I
Sbjct: 307 KVGDKVLKILAERLKKSVRKTDVVSRFGGDEFLVLLKDIHSIEDVIIYTQRILEEIKKEI 366

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSD 703
            +  ++  VT SIG + +  +     +++  A++AMY +K+ G +    + +       D
Sbjct: 367 EINSKKYYVTGSIGISIYPDNGEDLDKLIIYADIAMYQSKNDGKDRFNFYNIDYNKKAED 426

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + +K+++   ++N E  + + P      E + G E L++W+HP  G +   +F+  A E
Sbjct: 427 YLSLKQEIMQGLKNKEFEIYFQPQFD-KFEYLYGSEVLVRWNHPDKGFLYPEKFIPYAIE 485

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L +I  I+L++ E   +    W ++   P + +  N+    L  N+    ++ +I+K   
Sbjct: 486 LGLIDKIDLYVFEEAVKTYKHWYEKGYNPGV-LSWNVTMCQLQKNDFFSEIKEIINKYKI 544

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P  + L  +E  +M NP+ S  +L  ++++GIS+++DDFGT  S L+YL  +P D +K 
Sbjct: 545 NPGILNLEITEESIMKNPQISIKMLNLIKELGISISVDDFGTGYSSLAYLKKLPIDKIKI 604

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++        + I ++II + KN++  ++A+ +  +I  + +   GCD+IQ  + +
Sbjct: 605 DQSFISDIPYNRDDVIITKAIINLGKNLDLKVVAEGVKTKIQRQFVIDKGCDFIQGEYYS 664

Query: 942 SPLGFNSILK 951
            P+  N   +
Sbjct: 665 MPIDKNHFEE 674


>gi|169797220|ref|YP_001715013.1| hypothetical protein ABAYE3236 [Acinetobacter baumannii AYE]
 gi|213155986|ref|YP_002318031.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057]
 gi|215484661|ref|YP_002326896.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500742|ref|ZP_04660052.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB900]
 gi|301512846|ref|ZP_07238083.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB058]
 gi|301594190|ref|ZP_07239198.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB059]
 gi|332851275|ref|ZP_08433348.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332866144|ref|ZP_08436859.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|169150147|emb|CAM88041.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|193076343|gb|ABO10999.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
 gi|213055146|gb|ACJ40048.1| ggdef domain/eal domain protein [Acinetobacter baumannii AB0057]
 gi|213988225|gb|ACJ58524.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|332730155|gb|EGJ61482.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332734785|gb|EGJ65879.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 684

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 208/436 (47%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  +   
Sbjct: 305 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLHL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 483 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALQFENKKLFSTLEGL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 662 QGYLLGMPVNVGQLIQ 677


>gi|303328312|ref|ZP_07358750.1| putative sensory box-containing diguanylate cyclase [Desulfovibrio
            sp. 3_1_syn3]
 gi|302861642|gb|EFL84578.1| putative sensory box-containing diguanylate cyclase [Desulfovibrio
            sp. 3_1_syn3]
          Length = 1547

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 116/586 (19%), Positives = 224/586 (38%), Gaps = 18/586 (3%)

Query: 376  VLIVILIGFTVIQHVLATGYFSQGIFS---DGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            + +  ++G    + +      ++ +     + ER  + V  S  IV D D+    V   P
Sbjct: 962  IFLACVMGIDERKRLENFSSENEQLRQNRLEDERYRIIVEQSRGIVLDLDLE-RHVYYAP 1020

Query: 433  DIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +            GP+       +H +DR        +      G  +   R++  D  
Sbjct: 1021 GLEKQFVCDPIVREGPMGMLRSLEVHPDDRPLLDGFHAALRNTSEG--ETTLRLKRRDGA 1078

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            F W  + +    N+ G   R +G   D+    +++  +   A  D +TG  N   F    
Sbjct: 1079 FIWCRVAVTVRRNAAGRPTRIVGAVTDVDGDVRTVRQLRYRAEHDPVTGYSNLAKFKLDA 1138

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            T +L   A     +  +   D   +K IND+ G  VG+ +L              +  AR
Sbjct: 1139 TRLLAARA---GRKYALWHCDFRNFKYINDMYGYDVGNRLLKYWADLTAASFSSEETFAR 1195

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITS 670
             + + F ++     +  ++        + +     L  +   V  + G            
Sbjct: 1196 ATADNFVMLCAY-RDIAEMETRFWNAAELLGHFEELASKRFRVEVAGGCYLVEDGDARGI 1254

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPII 728
             +ML  A +A    K  GG+    +  +  +       ++  +  A+ N E      P I
Sbjct: 1255 DDMLDRATMAQKSVKPLGGSRYAFYSEAMRKKIFYEQDLEASMEKALHNGEFRAWLQPQI 1314

Query: 729  RLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             + +   ++G E L +W  P  G +  S+F+ + E    I  ++ FM E+    + S R 
Sbjct: 1315 DIRNGDSLIGAEVLARWQRPGRGFVPPSDFIPLFERNGFIVDLDAFMFEQACAYLAS-RR 1373

Query: 788  QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
               +PP+ + +N++   L      E    L  +   SP  ++L  +ES+ + +    R +
Sbjct: 1374 SRGLPPLRLSVNVSRMSLGQKSFLERYTTLRERYAVSPGMLELECTESLAVKDFPLFREV 1433

Query: 848  LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
            + RL   G    +DDFGT  S L+ L  I  D +K +      +  T +  A++ S++ M
Sbjct: 1434 MARLPGCGFRRAMDDFGTGYSSLNLLKNIDLDVLKLDMEFFRNTEETPRERAVIESVVSM 1493

Query: 906  AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            A  +    +A+ I     ++ L  +GCD +Q    + P+  +   +
Sbjct: 1494 AHALNMATVAEGIERPEQVEFLRAIGCDAVQGYIFSRPVPPDDFEE 1539



 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 8/280 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             +  + ++LG             L   IH +DR             +    + E+R+R 
Sbjct: 453 YVSDSLLSLLGYTRKEFEKACGGKLSGIIHPDDRGRVPAA---CADPQSDYYEEEYRIRK 509

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           AD    W + + R  ++ +G+ + YI I  DIT++K   + ++    QD LTG+ N    
Sbjct: 510 ADGNLIWALEKGRLATDEDGERI-YICILLDITDRKLRHDELVQRTRQDPLTGLYNHDYA 568

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              + T LD+          +++ D+D +K++ND  G   GD  LV     + +  +  D
Sbjct: 569 RQYIQTYLDIHQR--GHASALLLFDLDNFKRVNDRHGHLEGDAALVRFAEILKKQFRSRD 626

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            LAR  G+ F   L    +  +    A  + + +   +     +  +  S+G A +T+ +
Sbjct: 627 FLARTGGDEFIAFLQDIPSEREAEAMADGVARRMRDSLGREYADCGLALSVGVA-FTTER 685

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
            + + +   A+ AMY  K +G +  E     + R+    +
Sbjct: 686 TSYNLLFHTADEAMYRMKGKGRDGWEFVLDRAERAFERHL 725



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 429 TTTPDIATILGLAS-GSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
               ++   L   S       I+  +   IH  DR++   ++   +       +  +R+ 
Sbjct: 186 FVNDNLIRHLDYDSYEEFAADIQGMVGNGIHPEDREHVNHVVSESLAV-SDHYEVVYRML 244

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           A    F W++ R    ++    +   + I  DIT+Q++  E + 
Sbjct: 245 AKGGSFIWVLDRGCLTTDRGRKV--IVSIVIDITQQRRLQERLQ 286



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 11/139 (7%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASG----SMHGP 448
               +      E  +  +  + D +++ D+ R R  T        L L        +   
Sbjct: 844 SRKQREQIRIAEIYAFTLQDTSDEIYELDMERGRYQTIRSSGDEFLPLPPEGTLEELQRA 903

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           +R+    IH  DR+ F          R G+  + +FR    D  +H + I + P+  S+ 
Sbjct: 904 VRD--GMIHPGDRERFDRFHYRAREARNGKPGREDFRCLWRDGAYHSVSISVLPVKGSD- 960

Query: 508 DILRYIGIANDITEQKKSL 526
               ++     I E+K+  
Sbjct: 961 --RIFLACVMGIDERKRLE 977



 Score = 45.7 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 13/157 (8%)

Query: 385 TVIQHVLATGYFSQGIFSDGER---QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
            + +         + +    ER   + L    +  I+   D+   +         +    
Sbjct: 698 AMYRMKGKGRDGWEFVLDRAERAFERHLLFKHAFGIILRIDLDSGQYHIRYGAHAVSARL 757

Query: 442 SGSMHGPIRNWLPYIHI---NDRDNFR-----TILDSFVGYRRGRLQYEFRVRAADNQFH 493
             +           +H     D+   R       L +  G     L  E+RVR    +  
Sbjct: 758 PSTGLYEQMLGGALLHPVLPEDKTMLRKNLGLAQLRAACGRGEDVLSCEYRVRRTSGEIL 817

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           W+  R   + N   ++     + +D+TE +K  E I 
Sbjct: 818 WIESRFHFLRNGGQNLAY--NVISDVTESRKQREQIR 852



 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 41/164 (25%), Gaps = 9/164 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG------SGDIVWDWDIVRDRVTTTP 432
           VI+     I          Q   +  ER++  +        SG      D     +    
Sbjct: 267 VIVSIVIDITQQRRLQERLQRGMASLERKNAELGAFYQVVVSGIAKILDDPGYTLLYAND 326

Query: 433 DIATILGLASGSMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                LG     +     N  L  +H  D       +        GR   + R    + +
Sbjct: 327 QFFDNLGYTREEILSLFNNESLRIMHPVDAAATDKSIRELKEQ--GRFSVKCRFVKKNGE 384

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              + +     S S+           DI EQ++           
Sbjct: 385 SVRIRLDGCQTSESHDGYNVIYCFYTDIEEQERRDAVYQRQQHF 428


>gi|300694120|ref|YP_003750093.1| signal transduction eal-ggdef domains transmembrane protein,
           diguanylate cyclase/phosphodiesterase precursor
           [Ralstonia solanacearum PSI07]
 gi|299076157|emb|CBJ35470.1| putative signal transduction eal-ggdef domains transmembrane
           protein, Diguanylate cyclase/phosphodiesterase precursor
           [Ralstonia solanacearum PSI07]
          Length = 695

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 107/428 (25%), Positives = 204/428 (47%), Gaps = 7/428 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+P R      L   +  S+        +  +D+D   +IN+  G A GD VL  
Sbjct: 268 HDALTGLPTRLQLQQALDNAILSSSRRGRP-FALFYLDLDGLGRINEQYGRATGDRVLEI 326

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ + ++  D +ARL  + FG+++         A     +   +   + +  R + V
Sbjct: 327 IAERLRQTMRDEDTVARLGSDEFGLLVEGLPLPEAAAPIGDKLLFRLRESVEVDGRRLRV 386

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           TASIG A    +  T+  +L +A+ AM+  K   GN    +    ++     + I+  L 
Sbjct: 387 TASIGVAIHPYNGATAEALLAHADAAMFECKQAAGNAYRFYEPRLNTTAHRVLQIQRALS 446

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A  N +L+L Y P        + G EAL++W+HP+ G +S +EF+ +AE    I  +  
Sbjct: 447 HAALNGQLFLYYQPKFDAHTRSMTGAEALLRWNHPELGPVSPAEFLPLAERTGTIVELGD 506

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++E + R I+ W D A M P+ I +N++ +  L  +L + +  ++ +   +  R+    
Sbjct: 507 WVIEEVCRQIMHW-DAAGMAPLKIAVNLSPRQFLQPDLVQRLSQILYRYQVAADRLMFEI 565

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+  M +  +S   + +++ +G  + +DDFGT  S LSYL       +K + + ++   
Sbjct: 566 TETAAMRDARQSIAAIRQIQSLGFEVAIDDFGTGYSSLSYLQRFRAQQIKIDRAFISALD 625

Query: 893 EK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +      AI+R+I  MA +++ T++A+ +     ++ L  + CD +Q   +  PL     
Sbjct: 626 DNPSEAGAIIRAICAMAHSLDMTVLAEGVETGTQMQALVNLRCDQVQGYLLGRPLPARDF 685

Query: 950 LKLLKERF 957
             L+  + 
Sbjct: 686 QTLIDRKQ 693


>gi|241766640|ref|ZP_04764488.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax delafieldii 2AN]
 gi|241363074|gb|EER58705.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax delafieldii 2AN]
          Length = 777

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 138/502 (27%), Positives = 248/502 (49%), Gaps = 26/502 (5%)

Query: 462 DNFRTILDSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR-YIGIAND 518
               T L S +    R  R +Y+  +   D              +  G++ R +  +  D
Sbjct: 294 QRVATPLRSLLAATQRLSRGEYDVPLAHMDRT------------DEIGNLARSFDRMRID 341

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  Q      I   A+ D LTG+PNR+ F + +   L   A        V+ +D+D++K 
Sbjct: 342 IGAQ---QSEIRRLAYWDRLTGLPNRERFREAVVAALAPGAQRVRP-MAVLTLDLDRFKH 397

Query: 579 INDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +NDVLG   GD +L ++  R+  ++++  D++ARL GN F ++L   + +  +   A  +
Sbjct: 398 VNDVLGYPFGDRLLQAVAGRLREQVVRPEDMVARLGGNEFAVLLQGADAAAALE-VARRI 456

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFR 696
             S   P+   ++ + ++A++G A W      +  +L  +E+AMY  K +  G       
Sbjct: 457 NHSFEDPLVFEDQNVDLSAAMGIACWPGDAEDADTLLSRSEIAMYAGKRQLSGPLRYDPA 516

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + S  +  + +  +L  AVE+ EL L   P I L  +  +  EAL++W HP+ G +   E
Sbjct: 517 LDSASAQTLSLLTELRHAVEHHELRLYLQPKIALHGQPGLAAEALVRWQHPQRGLVPPME 576

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE+   ++ + L+M E + R + +    A   P+ + +N++++DLLD ELC  + A
Sbjct: 577 FIPFAEQTGFVRQLTLWMFEEVCRWLAT--PAARHLPLRVSVNLSTRDLLDPELCHRLAA 634

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+++   + S + L  +ES +M +P+R+  +L RL + G  L++DDFGT  S L+YL  +
Sbjct: 635 LLARYGVAASALCLEITESAIMDDPQRAEAMLNRLSEHGFKLSIDDFGTGYSSLAYLKRL 694

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S + G         I+RS I +A N+  T++A+ +  +  +  L  + CD 
Sbjct: 695 PVDELKIDKSFVMGMESAGDDALIVRSTIDLAHNLGLTVVAEGVETQAILGHLRSLSCDE 754

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q   ++ PL     L     +
Sbjct: 755 AQGYAISKPLPAADYLVWQTRQ 776


>gi|205374969|ref|ZP_03227760.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Bacillus coahuilensis m4-4]
          Length = 410

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/412 (30%), Positives = 213/412 (51%), Gaps = 11/412 (2%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            FL+ L+  +  S    + R  VM+ID+D++K IND LG   GD +LV +  R+ + L+ 
Sbjct: 1   MFLEDLSQAIS-SEDAKDQRVAVMIIDLDRFKYINDTLGHDYGDSLLVQVAERLQQFLEK 59

Query: 606 ----PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                  + RL G+ F  +L    ++ K    A  +  +      L  +E  +T SIG +
Sbjct: 60  SLLLYSKVYRLGGDEF-TLLHLRCSTEKAEQIAKRLVTAFNESFILHNQEFYITPSIGIS 118

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSE 719
            +         +++NA+ AMY+ K R  N+ + F     +     +  +++L  A+E  E
Sbjct: 119 VYLEQGEDLKTLMRNADTAMYYVKDREKNNYQLFTKDMHQHFYRKMVIEKELRGALEREE 178

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y PI+R+   +IVG+E+L++W H + G IS +EF+ ++EE  +I  +  +++   A
Sbjct: 179 LELYYQPIVRVETGDIVGVESLLRWHHAELGTISPAEFIPVSEETGLILPLGEWVIREAA 238

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R   SW++Q   PP+ + INI+ + LLD    + ++ L+ +    PS I L  +ES+ M 
Sbjct: 239 RQCKSWQEQ-GHPPVKMGINISVRQLLDKHFVDNVKRLLEEADLEPSLIDLEVTESIAMF 297

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           + +     L  L+ +G++L++DDFGT  S LSYL   P DT+K + S +      E   A
Sbjct: 298 DQKVMSDRLHTLKALGVTLSMDDFGTGYSSLSYLTKYPLDTLKIDRSFIQNIEQDENNQA 357

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           I+ SI+ MAK++   + A+ +  E D   L    CD  Q   +  P+    +
Sbjct: 358 IVASILSMAKHLRLEVTAEGVETEEDYAYLKAANCDKAQGYRIGYPVPAREL 409


>gi|170720166|ref|YP_001747854.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169758169|gb|ACA71485.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 683

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 119/446 (26%), Positives = 217/446 (48%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL       + R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQAQLDKILTDGCRLQH-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 290 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   +  P +L  ++I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEAPFDLDHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++L+LVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALSRNQLFLVYQPQISYRDHRVVGVEALLRWQHPELGM 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I  I  ++L++  R +  W D      + + +N+++  L  NEL 
Sbjct: 470 VPPDQFIPLAEQNGNIIPIGEWVLDQACRQLREWHDLGFSE-LRMAVNLSTVQLHHNELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGAMIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETSEQEAYIIA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   L++
Sbjct: 649 QGCHEGQGYHYSKPLSARELTSFLRQ 674


>gi|89074066|ref|ZP_01160567.1| hypothetical protein SKA34_03444 [Photobacterium sp. SKA34]
 gi|89050204|gb|EAR55715.1| hypothetical protein SKA34_03444 [Photobacterium sp. SKA34]
          Length = 655

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/549 (21%), Positives = 240/549 (43%), Gaps = 27/549 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R+ LA     ++   ++   + V+         G         +  ++      D D  +
Sbjct: 116 RRELAFSDYSNLALLFNEQGNLVSANTVFTKTYG----EDLSNLAAFV-----GDSDIAQ 166

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +         +     R+        W  I  + +S+ +  +L+ +    +IT++K++
Sbjct: 167 QWISDAKNNLNLKHS---RLCWTGKSHTWFNIEAKWLSDKSQLLLQIV----NITKEKEN 219

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
           L+    NA  D LTG+ NR+     L      ++   +L   ++ +D+D +K IND  G 
Sbjct: 220 LQRERYNAEHDFLTGLMNRRGISTAL-----KASHHSSLPYHLLFLDLDSFKLINDTYGH 274

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A+GD +L ++  R+ + ++   ++AR  G+ F II + +     +      +  ++  P 
Sbjct: 275 AIGDKLLRAVAIRLLDTVRGRGLVARFGGDEF-IIQVEDRYISNLVQLTQEIISALNRPF 333

Query: 646 NLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            +    EI++  SIG A +     +   ++  A++AM+ AK  G N    F+     +  
Sbjct: 334 YIKNIGEISIGCSIGTAQYPKDANSFETLITQADMAMHCAKKHGRNCSYHFQPHLAETLY 393

Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  L  A+E  +  L Y PII L    + G EALI+W     G++S +EF+ +AE
Sbjct: 394 RKNALRHHLSQAIEIKDFELYYQPIIDLNTMLLKGFEALIRWHDDSLGHVSPAEFIPLAE 453

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  I  ++L    + +  W  Q     + + IN++   L    L + ++A+  +  
Sbjct: 454 ETGQIVPIGSWVLRHACKQLDEWNQQY-DTKLVMSINLSRAQLKM-SLLDELKAITKEYN 511

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              +++ L  +ES ++ +   +   L  +  +G  L LDDFGT  S LS L  +P  TVK
Sbjct: 512 IDSAQVALEITESAMLHDFSEAMPCLDAIAALGFELYLDDFGTGYSSLSQLQNLPISTVK 571

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + S +    +   AI+ +   +   +   ++A+ +  +  ++ +     +Y Q  +   
Sbjct: 572 LDQSFVQNEHDSGKAIVEATKAICNKLNLKVVAEGVETKEQLEYIQSCNFNYCQGYYFNK 631

Query: 943 PLGFNSILK 951
           PL  + + K
Sbjct: 632 PLSVSELEK 640


>gi|309778778|ref|ZP_07673551.1| signaling repeat/GGDEF domain/EAL domain protein [Ralstonia sp.
           5_7_47FAA]
 gi|308922486|gb|EFP68110.1| signaling repeat/GGDEF domain/EAL domain protein [Ralstonia sp.
           5_7_47FAA]
          Length = 695

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 204/425 (48%), Gaps = 7/425 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR    + L   +  S         +  +D+D + +IND  G   GD VL 
Sbjct: 268 LHDALTGLPNRLHLREALEAAILSSTRRGR-PFALFYLDLDNFGQINDQYGRNAGDRVLQ 326

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+ + ++  D +ARL G+ FGI++         A     +   +   + +  R + 
Sbjct: 327 IIAERLRQAIRGEDTVARLGGDEFGILVEGLALPEAAATIGDKLLFRLRESVEVEGRRLR 386

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDL 711
            TASIG      +  T+  +L++A+ AM+  K   GN    F    ++     + I+  L
Sbjct: 387 ATASIGVVVHPHNGATADTLLEHADTAMFDCKQSTGNAYRFFEPRLNTTAHRVLQIQRAL 446

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A  N +L + Y P      + + G EAL++W+HP+ G +S +EF+ +AE    I  + 
Sbjct: 447 SHAALNGQLSVYYQPKYDARTQAMAGAEALLRWNHPELGPVSPAEFIPLAERTGTIVELG 506

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++E + R I+ W D   M P  I +N++ +     +L + +  ++ +   +  R+   
Sbjct: 507 DWVVEEVCRQIMHW-DAIGMAPQRIAVNLSPRQFQQPDLVQRLSQILHRYQVAAHRLMFE 565

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  M +  +S  ++ +++ +G  + +DDFGT  S LSYL       +K + + ++  
Sbjct: 566 ITETAAMRDASQSIAVIRQIQSLGFEVAIDDFGTGYSSLSYLQRFRAQQIKIDRAFVSAL 625

Query: 892 T---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +  AI+R+I  MA +++ T++A+ +  E  ++ L  + CD +Q   +A P+    
Sbjct: 626 DDNPPEAAAIIRAICAMAHSLDMTVVAEGVETEAQMQALVNLQCDQVQGYLLARPMPAKD 685

Query: 949 ILKLL 953
              LL
Sbjct: 686 FQGLL 690


>gi|126640617|ref|YP_001083601.1| hypothetical protein A1S_0546 [Acinetobacter baumannii ATCC 17978]
          Length = 657

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 208/436 (47%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 219 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 277

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  +   
Sbjct: 278 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLHL 336

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 337 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 396

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 397 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 455

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 456 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALQFENKKLFSTLEGL 514

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 515 LKKYQIQPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 574

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 575 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 634

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 635 QGYLLGMPVNVGQLIQ 650


>gi|104780333|ref|YP_606831.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95109320|emb|CAK14020.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL
           domain) [Pseudomonas entomophila L48]
          Length = 683

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 121/446 (27%), Positives = 217/446 (48%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +   A  D LTG+PNRQ    +L  IL         R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQR-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+     VGD +L++L  R+         LARL G++F ++  +     + A+ 
Sbjct: 290 DDFKGINEQFSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   +  P +L  ++I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEAPFDLDHQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++LYLVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGM 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AE+   I +I  ++L++  R +  W D      + + +N+++  L  NEL 
Sbjct: 470 VPPDQFIPLAEQNGNIISIGEWVLDQACRQLREWHDLGFGE-LRMAVNLSTVQLHHNELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQAYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQESYIIA 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 QGCHEGQGYHYSKPLSARELTAFLKQ 674


>gi|153836727|ref|ZP_01989394.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750076|gb|EDM60821.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AQ3810]
          Length = 763

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 218/438 (49%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ E +L  A  D+LT +PNR+     +   +       +   T+M IDID +K +ND
Sbjct: 325 EHETKERLLYQACHDHLTRLPNREYLRSNIQRWM----CGSSNPFTLMFIDIDNFKSVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+VL  ++ R+        ++ R + + F  I+ +  +   I D A  + +++
Sbjct: 381 THGHEFGDEVLKQISTRLNHFSGEGRLIVREASDEFIFIV-NRTDEETIKDLASELIQTL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P N+ + +  ++ SIG A +         +L +A++AMY AK +  N    F      
Sbjct: 440 SKPYNVNDNQFLLSCSIGIAFYPMHGDNLDALLLSADIAMYQAKKQ-RNAYSLFNQEMQA 498

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S    +  ++ L LA+E   L++ Y P + + + EI G+EAL++W+  + G +  +EF+ 
Sbjct: 499 SHLHKMKVEQRLRLAIEKQTLFMAYQPQLNI-NGEIYGVEALVRWEDEELGKVPPNEFVP 557

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +   ++E+   D+          PI + INI+ K  L  +  E + A + 
Sbjct: 558 VAESSGLMVRLGELIIEKSLEDMGLLTTHLA-TPIQMSINISVKQFLHAKFIERLMAAMD 616

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K     +RI L  +E++ + + E+      RL  +G  ++LDDFGT  S LS L  +P D
Sbjct: 617 KYHLDCNRITLEITENLFIEDLEKFSPTCERLHALGFKISLDDFGTGYSSLSMLRTLPID 676

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +      + A  ++++II + KN E  ++A+ +  +    +L   GCD IQ 
Sbjct: 677 EVKIDKSFVDNIEHDKKALNMVKNIIAIGKNFEMKVLAEGVETQRQRDQLEACGCDLIQG 736

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL F+ ++  +K+
Sbjct: 737 YFYSKPLSFDQLVSFVKD 754


>gi|330878877|gb|EGH13026.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 763

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 226/442 (51%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L    T       VM +DID +K+
Sbjct: 276 LSQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLLE-HTHSKGMLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S  +  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CILLSIPDYEEARHLAHRVM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +   I L  R + +T SIG A +     T  E+LK+A+LA+Y +K  G N V  F  +
Sbjct: 394 DKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKGNGRNRVNFFSPA 453

Query: 699 SFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 + +  +  L     E   L + Y PI+ +    +  LEAL++W+HP+ G ++  
Sbjct: 454 LKTKASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKLEALVRWNHPQHGLLAPV 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++ ++L R   D+ + R++     + I +N +++ L  +EL E ++
Sbjct: 514 RFIGIAESNGLIAELDNWVLRRACHDLATLREEGLEQ-LIITVNCSAQTLGRDELVEEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL++DDFGT  S L+YL  
Sbjct: 573 QALADADATPDRLELEVTENALMGNISNTILMLKHIRSLGVSLSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P DT+K + S +     + + + I+++II MA  +   ++ + +     +K L + G D
Sbjct: 633 LPLDTLKIDRSFIIDIPESPQDMEIVQAIIIMAHTLHLKVVTEGVETPAQLKFLNQFGSD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q    + P     IL L K+
Sbjct: 693 YVQGYLFSRPQPLERILPLAKQ 714


>gi|330895179|gb|EGH27517.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 676

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 213/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  V+ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAVLCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 298 QFSYQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPLNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVMTEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|317484322|ref|ZP_07943243.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924400|gb|EFV45565.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1549

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 126/571 (22%), Positives = 241/571 (42%), Gaps = 20/571 (3%)

Query: 398  QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--Y 455
            Q +    ER  + V  +  +V+DW     ++   P + ++L   +    G + + L    
Sbjct: 986  QRLHMMDERYRIIVEQTKSVVFDWGPE-QQLHYAPYLGSLLDCRNN--PGNVPDMLRSLT 1042

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +H  D  +F+    S   YR  +++   R+R  D  F W  I      ++ G +LR +G 
Sbjct: 1043 VHPRDMADFKAFHASL--YREDQVETTVRLRRRDGAFIWCRIAATLKRDAQGKLLRIVGT 1100

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +D+ +  ++L  +   A  D +TG  N   F      +L       + + ++   DI  
Sbjct: 1101 ISDMDDNVRALRHLRYQAEHDPVTGYSNFAKFKTDAAELLA---ARGDRKYSLWYCDIRN 1157

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K IND+ G  +GD++L      I E  +  +   R+SG+ F  +L    +   +    +
Sbjct: 1158 FKFINDIYGYDIGDELLSYWAELIAEGARPGETFGRISGDNFA-LLRCYRDIDDLVARFL 1216

Query: 636  AMRKSIAMPINLLEREITVT--ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                 +     L  R   V   A I         ++  +ML  A LA    KH  G+   
Sbjct: 1217 RCSDLLTRFEGLANRRFRVEMIAGIYLVERPEDILSIDDMLDRANLAQKSVKHLSGSKYA 1276

Query: 694  SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWG 750
             +     +       I+  +  A+ N E  L   P + +     + G E L++W+ P +G
Sbjct: 1277 LYSEEMRKRVLYEKNIESCMEEALRNREFCLHLQPQVDIQHGDALFGAEVLVRWERPGYG 1336

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +S  +F+ + E    I  ++ F+ E     + S R    +PP+ + +N++   +   + 
Sbjct: 1337 MVSPGDFIPLFERNGFIVDLDAFVFEEACAYLAS-RGSRGLPPLRLSVNVSRLSIAQGDF 1395

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
             +   A+  K       ++L  +E++V+ N    R L+  L   G    +DDFGT  S L
Sbjct: 1396 LDRYSAIRDKYGIDSGMLELECTETMVIRNFALFRELMAALPSRGFRSAMDDFGTGYSSL 1455

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            + L  I  D +K + +    +  T +  A++ SI+ MA+ +  + +A+ +  +  ++ L 
Sbjct: 1456 NMLKEIALDVLKLDIAFFRDTEGTPRERAVVESIVQMARALGMSTVAEGVEKQEQVEFLR 1515

Query: 929  RMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
             +GC  IQ    + P+        ++  FPL
Sbjct: 1516 SIGCSAIQGYIFSRPVPLALFES-VEASFPL 1545



 Score =  194 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 12/298 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGD--IVWDWDI--VRDRVTTTPDIATILGLASGSMHGPIRNW 452
            +      +R  ++++ S      +  D    R     +  +   LG       G +   
Sbjct: 414 RREADYRRQRYFMSLIDSSLEGGFFVTDGGDERRLAYISEGMLHFLGYEPDVFQGLMAGG 473

Query: 453 LPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           L  I   +D   FRT     V    G  + E+R+R  D Q  W++ + R + +  G+ + 
Sbjct: 474 LEAIVCSDDVALFRTAWREAV---NGCYEQEYRIRKGDGQVIWVLEKGRLVVDGEGEPV- 529

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I +  DITE+K   + ++     D LTG+ NR+     + T LD           ++V 
Sbjct: 530 CICLLLDITERKMRQDELIRQTRLDPLTGLYNREYAQQFIQTYLD--IHCGGHSSALLVF 587

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K++ND  G   GD VL++  + + E  +  D +AR  G+ F   +    +  +  
Sbjct: 588 DLDHFKRVNDRYGHLRGDAVLIAFAKLLQESFRTRDFVARTGGDEFIAFMQDVPSRTEAL 647

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           D +  +R++++  +     +  ++ SIG A ++  +I+   + + A+  MY  K R  
Sbjct: 648 DVSRRIREAMSATLGNEYADCKLSVSIGVA-YSHEQISYDALFQLADDDMYRMKFRAR 704



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 429 TTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                +   LG +S    +          IH  DRD   T+++  +       +  +R+ 
Sbjct: 182 FINDQLLGYLGYSSYEDFVEDTGGMVENGIHPGDRDRVNTLVNESMTV-TDSYEVSYRML 240

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             D  + W++ R     + +G  +  + I  DIT   +  E +  
Sbjct: 241 RRDGSYIWVLDRGLRNISEDGRPV-IVSIVVDITRSHELQEQLQQ 284



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 16/147 (10%)

Query: 399 GIFSDGERQSLAV-------LGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIR 450
               + ER  +A+         SG+ +++ ++ R+          T L L        ++
Sbjct: 841 ETRHERERSRVALLYDFALSEESGE-IYECNLTRNTFRIIRHSSGTFLPLPDEGRLDDLK 899

Query: 451 NWL--PYIHINDRDNFRTILDSFVGYR--RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +    IH  D + +  ++ +    R   G L+ +FR    D+ +HW+   +  + +++
Sbjct: 900 AMVRESMIHPEDLERYDRVVANARSLRLNDGVLKEDFRCLWRDDSYHWVTANVLCVEDAD 959

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
              L ++ +   I ++K+  E    NA
Sbjct: 960 K--LHFVWVHG-IDDRKRLDEFSRENA 983



 Score = 46.9 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 41/138 (29%), Gaps = 19/138 (13%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           D     +        ++G     + G      + +++  D       + +      GR  
Sbjct: 313 DAEYTILEANDQFFCMIGYTREEVRGQFGNRAINFVYAEDLIVGNDEIRNRKA--TGRFS 370

Query: 481 YEFRVRAADNQFHWMIIRIRP--MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             FRVR  D    W+ +         +  ++L       DI EQ++              
Sbjct: 371 IPFRVRRKDGSDIWVRLDACRAEERWNGHEVLYCF--YTDIDEQQRREADYRRQ------ 422

Query: 539 TGIPNRQSFLDRLTTILD 556
                 + F+  + + L+
Sbjct: 423 ------RYFMSLIDSSLE 434



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 7/92 (7%)

Query: 450 RNWLPYIHINDRDNFRTI-----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 I   D ++   +     L       +  L  E+R + +     W+  R      
Sbjct: 767 EAVRSNIVAEDSEDVYALCRIENLRQVFESDKRELLCEYRAKMSAGGTRWIQSRF--FFA 824

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           ++G          DITE +   E        D
Sbjct: 825 TSGRSRLCYSTITDITETRHERERSRVALLYD 856


>gi|308126261|ref|ZP_05908826.2| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308106939|gb|EFO44479.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 763

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 218/438 (49%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ E +L  A  D+LT +PNR+     +   +       +   T+M IDID +K +ND
Sbjct: 325 EHETKERLLYQACHDHLTRLPNREYLRSNIQRWM----CGSSNPFTLMFIDIDNFKSVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+VL  ++ R+        ++ R + + F  I+ +  +   I D A  + +++
Sbjct: 381 THGHEFGDEVLKQISTRLNHFSGEGRLIVREASDEFIFIV-NRTDEETIKDLASELIQTL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P N+ + +  ++ SIG A +         +L +A++AMY AK +  N    F      
Sbjct: 440 SKPYNVNDNQFLLSCSIGIAFYPMHGDNLDALLLSADIAMYQAKKQ-RNAYSLFNQEMQA 498

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S    +  ++ L LA+E   L++ Y P + + + EI G+EAL++W+  + G +  +EF+ 
Sbjct: 499 SHLHKMKVEQRLRLAIEKQTLFMAYQPQLNI-NGEIYGVEALVRWEDEELGKVPPNEFVP 557

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +   ++E+   D+          PI + INI+ K  L  +  E + A + 
Sbjct: 558 VAESSGLMVRLGELIIEKSLEDMGLLTTHLA-TPIQMSINISVKQFLHAKFIERLMAAMD 616

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K     +RI L  +E++ + + E+      RL  +G  ++LDDFGT  S LS L  +P D
Sbjct: 617 KYHLDCNRITLEITENLFIEDLEKFSPTCERLHALGFKISLDDFGTGYSSLSMLRTLPID 676

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +      + A  ++++II + KN E  ++A+ +  +    +L   GCD IQ 
Sbjct: 677 EVKIDKSFVDNIEHDKKALNMVKNIIAIGKNFEMKVLAEGVETQRQRDQLEACGCDLIQG 736

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL F+ ++  +K+
Sbjct: 737 YFYSKPLSFDQLVSFVKD 754


>gi|171057916|ref|YP_001790265.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170775361|gb|ACB33500.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 666

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/432 (26%), Positives = 212/432 (49%), Gaps = 6/432 (1%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A+ D +TG+ NR +  + L   +  +        +V+ IDID +KKIND LG A G
Sbjct: 224 MRDLAYVDTVTGLFNRNAAGEHLAESV-RAGQAGGEGFSVVTIDIDDFKKINDTLGHAAG 282

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  + RR+   L       R  G+ F I+    N       +   + +++     L 
Sbjct: 283 DALLCEVARRLTGALSPSARAYRFGGDEFVIVCPDPNGFRDPDCYGHRIGEALGGAFLLD 342

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706
            R + +  S+G A +     ++SE+L+ ++LAMY AK  G N V  F           + 
Sbjct: 343 GRLLHLGGSVGVARFPIDGSSASEVLRASDLAMYRAKANGKNQVVVFDAHLRAASEQSLR 402

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+ +L LA+E  EL L Y PI+ L     VG EAL++W HP+ G +  ++F+ +AE   +
Sbjct: 403 IESELWLALERGELRLFYQPIVELASGRTVGAEALVRWQHPQRGLLGPADFIDVAESTGL 462

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  +  ++L   AR +  W D   + P+ + +N++++ L  + L +  ++ +     +P 
Sbjct: 463 VVPLGGWVLAEAARQLARW-DADGLAPMQMAVNVSARQLGGDVLLQQYRSAVDAAGCAPQ 521

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +E  ++ N + +  LL RLR  G+S+ +DDFGT  S L+YL ++P + +K + S
Sbjct: 522 RLEIELTEHTLVDNVDVNLRLLNRLRDWGVSIAIDDFGTGLSSLAYLKHLPVNKLKIDRS 581

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G        AI+ + + MA  +   ++A+ +        L  +     Q      P+
Sbjct: 582 FVDGLPGDAGDHAIVSAAVSMAHALGMQVVAEGVETRAQADVLCGLHASLAQGWLFGRPV 641

Query: 945 GFNSILKLLKER 956
              +  + L+++
Sbjct: 642 DAQAFAQRLRDQ 653


>gi|260556102|ref|ZP_05828321.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|260410157|gb|EEX03456.1| ggdef domain/eal domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
          Length = 684

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 207/436 (47%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  +   
Sbjct: 305 DAFGHHFGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLHL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 483 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALQFENKKLFSTLEGL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 662 QGYLLGMPVNVGQLIQ 677


>gi|184156874|ref|YP_001845213.1| EAL domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183208468|gb|ACC55866.1| EAL domain protein [Acinetobacter baumannii ACICU]
          Length = 684

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 208/436 (47%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  +   
Sbjct: 305 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLHL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 483 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALQFENKKLFSTLEGL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 662 QGYLLGMPVNVGQLIQ 677


>gi|217973467|ref|YP_002358218.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217498602|gb|ACK46795.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS223]
          Length = 749

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 130/591 (21%), Positives = 247/591 (41%), Gaps = 24/591 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATI- 437
           + +        LA+    +    + +R ++         +   +     +   P    I 
Sbjct: 165 LDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIV 224

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           L       +   + +L       + N    L   +   +   Q E      + +  ++ +
Sbjct: 225 LPQDIDIENFNPKMFLS----ASQSNELVGLFEHLAQDK-MWQGELVGLRGNGEEFYLDL 279

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +      NG    +  + +DI+E+KK+ + I   A  D+LTG+ NR +    + + +  
Sbjct: 280 IVTTFREPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSFITS 339

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +       + M++D+D +K++ND  G   GD +LV + R+I E L    + ARL G+ F
Sbjct: 340 DSLTPG--FSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEF 397

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L    N  ++A  A  + K +A    L   + +  + SIG A +    +   ++L  
Sbjct: 398 ALLLPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNC 457

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY +K  G N    F      +      +   L  A++     L Y PI+      
Sbjct: 458 ADQAMYISKANGRNRYHFFTEQMQLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGL 517

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IV  E L++W H +   I   EF+ IAE   +I  I   +     + I+  +      PI
Sbjct: 518 IVRAEVLLRWQH-EGQFIPPDEFIPIAENSGLIVDIGRDVRLGAMQTILEMQAH--NWPI 574

Query: 795 FILINIASKDL----LDNELCEGMQAL---ISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            + +N+++ +     L +   +   A+   +  T +   R+ L  +ES++M        +
Sbjct: 575 NLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDV 634

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905
           L  LR  GI ++LDDFGT  S LSYL   P D +K + S +    E +   A++ +I+ +
Sbjct: 635 LNGLRIKGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRL 694

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  ++ T+ A+ +  E  +K +       IQ      P+   +   LL ++
Sbjct: 695 SHALDLTVTAEGVETESQLKFVMSNHIQEIQGYLFYKPMPKAAFFALLAKQ 745


>gi|104783937|ref|YP_610435.1| sensory box protein/response regulator (hybrid) [Pseudomonas
           entomophila L48]
 gi|95112924|emb|CAK17652.1| putative sensory box protein/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 705

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 124/582 (21%), Positives = 249/582 (42%), Gaps = 30/582 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
              +          Q +  + E         +  + + +   D         P I+ +L 
Sbjct: 127 VQALLEQQRNRRMLQSLTRELESARAFNASILENAAEGILVVDESGTINFANPAISRLLD 186

Query: 440 LASGSMHGPIRNWLPYI--------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                + G   + L  I        H +D         +++  +  R+  + ++R    Q
Sbjct: 187 TPVEKLQG--AHVLDLIQLPCANLWHESD------FYQAYLKRQIFRVH-DAQLRTVSGQ 237

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
              + +   P+          +    D++  +   + +   A  D LTG+ NR+ F    
Sbjct: 238 LIPVALSCAPLPAEQ---RAMVVTVLDMSVVRSLHQQLEYQAVTDPLTGLLNRRGFYQAA 294

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L  +   D +R  +M +D+D +K+IND+LG   GD VL  +  ++ E L    +LAR
Sbjct: 295 EGALMRNERSDKVR-ALMYMDLDGFKRINDLLGHEAGDKVLRWVAEQLKECLGSEALLAR 353

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G+ F  +        +   +A  + + ++    L   E+++  SIG A++        
Sbjct: 354 MGGDEFTALFDGLPYPEQAGRYAEKLLERMSSFQQLDGLEVSLGVSIGIATYPDCGANVE 413

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +L+ A+ AMY AK  G      +    +     R+M+++ +  A+E ++  LVY P + 
Sbjct: 414 GLLRAADAAMYAAKQAGRQQYRFYDEELNGRARSRLMLEDSVREAIEQNDFTLVYQPQVA 473

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
             D  + G EAL++W HP  G++    F+ + EE  +I  +  ++  + A     W ++ 
Sbjct: 474 FADGRLRGFEALLRWQHPSVGDVPPGLFIPLLEEARLINRLASWIYRKGAAQRREWGERF 533

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + I+++        L + +  ++ +    P+++++  +E+ +M N + +   + 
Sbjct: 534 G-SQLVLGISLSRAQFAMPGLADELARVLDEHGLQPAQLEVEVAETSLMYNIDAAVKQVH 592

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           RLR++GI + LDDFG     L  L  +P DT+K +  L+     +   IA+ RS+I +  
Sbjct: 593 RLRELGIRVALDDFGAGDCSLRMLRDLPIDTLKIDRHLVARLPESAADIAMARSVIGLCA 652

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +   T+IA+ +  +     L   GC Y+Q   VA P+  +  
Sbjct: 653 DYGITVIAEGVETKAQADWLKSSGCTYVQGFLVARPMTASDA 694


>gi|222106622|ref|YP_002547413.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221737801|gb|ACM38697.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 656

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 213/439 (48%), Gaps = 12/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K     +   A  D+LTG+PNR  F   L   L  +         ++++D+D +K +N
Sbjct: 214 ELKSQNNRLEYVAHHDSLTGLPNRILFRQDLEARLVSAKA-GGPPAIILLLDLDGFKDVN 272

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  +  R+ ++    D++ RL G+ F I+      +    DFA  +   
Sbjct: 273 DTLGHDIGDALLRMVASRLVDIKDHGDLVCRLGGDEFAILSTGLTETQ-AMDFATHLMHE 331

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +   + ++EI +   +G A + + +  + E+ K A+LA+Y AK  G +H   F     
Sbjct: 332 LGLVYLVGDQEIKIGTCVGVAIF-NDEPDTDELFKRADLALYEAKALGPSHACVFENQMQ 390

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR   + DL  A++N E+ + Y P+      EI G EAL++W HP  G++S  +F+
Sbjct: 391 TRLKDRKSFEADLQTALQNGEMEVYYQPLATTATREICGYEALLRWTHPSRGSVSPVDFI 450

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE++ +I  +  ++L     +  SWR       + I +N++S       L + +   +
Sbjct: 451 PVAEKIGVIDGLGDWVLRTACMEAASWR-----GNLKIAVNLSSVQFRSATLVQKVLDAL 505

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +  S  R++L  +ESV++   E +   L  L+ IGI + +DDFGT  S L  L   PF
Sbjct: 506 EISGLSAGRLELEITESVLLDKNELTLKTLRELKAIGIQIAMDDFGTGYSSLGSLRGFPF 565

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   T     +AI   +  +  ++  T  A+ +  E   + + R+GCD +Q
Sbjct: 566 DKLKIDRSFIRDVTTRADALAIAELVTGIGASLGMTTTAEGVETEEQFECVKRLGCDQVQ 625

Query: 937 DSHVASPLGFNSILKLLKE 955
              +  P   + +  LL+E
Sbjct: 626 GYLIGRPEPASFLTHLLQE 644


>gi|160875202|ref|YP_001554518.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160860724|gb|ABX49258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS195]
 gi|315267395|gb|ADT94248.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS678]
          Length = 749

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 132/591 (22%), Positives = 244/591 (41%), Gaps = 26/591 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATI- 437
           +   +I         +       E Q LAV         +   +     +   P    I 
Sbjct: 165 LDLELISEAARLASLAIERSRAMEFQHLAVKIFDRLPLALVISNSDDSVLYANPAFKHIV 224

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           L       +   + +L     N+       L           Q E      + +  ++ +
Sbjct: 225 LPQDIDIANFNPKVFLSASQPNELVGLFEHLAQ-----DKMWQGELVGLRGNGEEFYLDL 279

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +      NG    +  + +DI+E+KK+ + I   A  D+LTG+ NR +   ++ +++  
Sbjct: 280 IVSTFREPNGLQPCFAWLFSDISERKKAAKLIKYQANNDSLTGLANRNALFKQIQSLITS 339

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +       + M++D+D +K++ND  G   GD +LV + R+I E L    + ARL G+ F
Sbjct: 340 DSLTPG--FSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMMFARLGGDEF 397

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L    N  ++A  A  + K +A    L   + +  + SIG A +    +   ++L  
Sbjct: 398 ALLLPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNC 457

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY +K  G N    F      +      +   L  A++     L Y PI+      
Sbjct: 458 ADQAMYISKANGRNRYHFFTEQMQLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGL 517

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IV  E L++W   +   I   EF+ IAE   +I  I   +     + I+  +      PI
Sbjct: 518 IVRAEVLLRWQL-EGQFIPPDEFIPIAENSGLIVDIGRDVRLGAMQTILEMQAH--NWPI 574

Query: 795 FILINIASKDLLDNEL-------CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            + +N+++ +   +EL          +   +  T +   R+ L  +ES++M        +
Sbjct: 575 NLSVNVSTFEFWSHELQDAFVDSFAEITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDV 634

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905
           L  LR  GI+++LDDFGT  S LSYL   P D +K + S +    E +   A++ +I+ +
Sbjct: 635 LNGLRLKGINISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRL 694

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  ++ T+ A+ +  E  +K +       IQ      P+   +   LL ++
Sbjct: 695 SHALDLTVTAEGVETESQLKFVMSNHIQEIQGYLFYKPMPKAAFFALLAKQ 745


>gi|167623870|ref|YP_001674164.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167353892|gb|ABZ76505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella halifaxensis HAW-EB4]
          Length = 724

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 132/623 (21%), Positives = 260/623 (41%), Gaps = 27/623 (4%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-IQHVLATGYFSQGIFS 402
             L  I  + + + I   L+  +               +     +   LA    +Q  + 
Sbjct: 113 QALGIISVLEVAIRINGHLEGILSLERTEATEPWHDSEVQLCSQVADQLALTLATQYGYE 172

Query: 403 DGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             ER +L   A   S  I+   ++  D +       A +  +    + G     L +   
Sbjct: 173 KDERLTLFLSAAEQSDQIMMVVNLASDCIEYVNKAHADLTKVPRERVLGRQVQSLDFF-- 230

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             +      L           + E  +   D   +WM   ++   +  G+    +  A D
Sbjct: 231 -RQYPTLAALVLKKARIGETSEEEVNLVRHDGSPYWMRFSVKRFISERGNHFALVN-AED 288

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            TEQ      +L  A++  LTG+ NR  F   L             +  +++ID+ ++K+
Sbjct: 289 CTEQHNHQSELLRLAWRCGLTGLYNRTHFSQVLEKA---------QKGHLVLIDLREFKR 339

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIA 636
            ND  G A GD +L+ + RR+    +   I  +AR+  + FGI+  +E + + I      
Sbjct: 340 FNDTYGHANGDIMLIEVARRMRHFAEAHQISEVARIGSDEFGILFENEEDEIFIEHATER 399

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K + +PI +   +I    ++      S +     +L  A++A+ +AK++ GN ++ F 
Sbjct: 400 LYKQLEVPITIGIEQIEPKPALARVDLASIEQQF-SLLTCADIALQYAKNKQGNAIQVFN 458

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +   +   I+ DL +A++  +  L Y P+  L  +  +G EALI+W HPK G +  
Sbjct: 459 SALLNAFKEDAQIERDLAVAIKGRQFELYYQPLKDLKKQSYIGAEALIRWHHPKKGVLYP 518

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE+  +I  I  ++LE   + +  W+       I + +N++++      L E +
Sbjct: 519 GAFIDIAEQTGLINDIGSWVLEAACKQLNLWQRH--QIDISMHVNVSARQFFSGTLFEQV 576

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L+++    P  + L  +E+ +M +   +  L   L  +G+ L +DDFGT  S + YL 
Sbjct: 577 WELVTRYRLKPHSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLK 636

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P   +K + S ++    + +   I+ +II MA  +  ++ A+ +  +     L    C
Sbjct: 637 QFPISKLKIDRSFISDLSVSHESREIVSAIIAMASALNISLTAEGVETKEQEHFLAEHSC 696

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
              Q    +  L  +   + L++
Sbjct: 697 HQAQGFLYSPALRVSEFGQFLEK 719


>gi|226942938|ref|YP_002798011.1| intracellular signalling protein [Azotobacter vinelandii DJ]
 gi|226717865|gb|ACO77036.1| intracellular signalling protein with diguanylate cyclase and
           phosphodiesterase activities [Azotobacter vinelandii DJ]
          Length = 802

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 127/570 (22%), Positives = 237/570 (41%), Gaps = 28/570 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q + +           S   +             P  A + G A   + G    
Sbjct: 245 QLHERQQALQNSERLMRELFDSSPVGMLVVSCGLCIEQANPAAAVLFGCAPADLPGKR-- 302

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                   DR      L   +         E        +   + +   P    +G    
Sbjct: 303 ------PRDRLLKGESLRRLLRTPANT-PVELTGLCQ-GRELPLEVTWTPFV-RDGS-RH 352

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTG-IPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           Y+ +  DI+E+ ++ + +   A  D LT  + NR   + RL  +L           +++ 
Sbjct: 353 YLLLLRDISERLQAEQRLRFLAHFDPLTHHLANRHYLVQRLEQLLAT-----RTPLSLLF 407

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DID +K+IND LG  VGD +LV + RR+  L+    ++AR  G+ F ++L     + + 
Sbjct: 408 LDIDHFKRINDTLGHEVGDHLLVEIARRLTRLVPDQVLVARSGGDEFLLLLAR-RAAEQA 466

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A  + +    P+ + + E  +T SIG A+       ++++LK A+LA+Y AK  G N
Sbjct: 467 RELAETLLRDFKTPLQVGQYECFLTPSIGIANCDGQG-DATDLLKQADLALYAAKDAGRN 525

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  +          R+ ++ +L  A++  E  L Y   +         +EAL++W  P 
Sbjct: 526 RLAVYSHPLGEAAEHRLQLEHELRRALDLREFTLHYQAQVDDQ-GRPQVMEALLRWHSPT 584

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +   EF+ + EE  MI     ++     R    W        + I +N++  D    
Sbjct: 585 RGLVLPGEFIPVLEESGMIIEATRWVFREACRQARRW--AGQGHALRIAVNLSPLDFRQA 642

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   + A++ +       ++L  +E+ ++   +  +  L RL+  G+ L LDDFGT  +
Sbjct: 643 DLAGSLLAILEEERPPTGSLELEITETALLDAGDDVQQTLARLKAAGMPLLLDDFGTGHA 702

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL   PFD +K +   + G   +E  +A++R I+ MA+++   ++A+ +  E     
Sbjct: 703 SLAYLQQFPFDGIKIDRQFVAGLPESEHSVALVRGILTMARHLGLHVVAEGVSNERQAAF 762

Query: 927 LTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
           L   GC  +Q  H   P     + +  ++E
Sbjct: 763 LRLNGCPSLQGYHYCRPQPAEDLERIWIRE 792


>gi|330877007|gb|EGH11156.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 756

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 243/468 (51%), Gaps = 14/468 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T 
Sbjct: 255 LQGKEHDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HTY 310

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +N    VM +DID +K+IND LG   GD++L  +  RI    +  D+++R  G+ F  IL
Sbjct: 311 NNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CIL 369

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA+
Sbjct: 370 LSIPDYEEARHLAYRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLAL 429

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGL 738
           Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PI+ +    +  L
Sbjct: 430 YQSKGNGRNRVNFFSPALKTRASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKL 489

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +     + I +
Sbjct: 490 EALVRWNHPQHGLLAPGRFIGIAEANGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIITV 548

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N ++  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL
Sbjct: 549 NCSALTLGRDELVEEVEQALADADVAPGRLELEVTENALMGNISNTILMLKHIRSLGVSL 608

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ +
Sbjct: 609 SIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLHLKVVTE 668

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
            +     ++ L+R G DY+Q    + P     IL L   + ER P  +
Sbjct: 669 GVETPAQLEFLSRFGSDYVQGYLFSKPQPLERILPLARQMNEREPTTR 716


>gi|87120742|ref|ZP_01076635.1| hypothetical protein MED121_18415 [Marinomonas sp. MED121]
 gi|86163970|gb|EAQ65242.1| hypothetical protein MED121_18415 [Marinomonas sp. MED121]
          Length = 557

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 125/559 (22%), Positives = 246/559 (44%), Gaps = 21/559 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY------IHINDRDN 463
           +   G  +   +              +L      +    I  W  +       H +    
Sbjct: 1   MESIGQGLIKLNHKGHITYANMTAYQLLKSVPEILIDSHIDQWFRFEDSTQATHYSILSR 60

Query: 464 FRTILDSFVGYRRGRLQYEF--RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               LD       G  +  +   + A       + I    ++ +       + +  DI++
Sbjct: 61  IEAALDQSPNMDNGYQEKAYASPILAPQ---FTVEITCSNLAMT--SPTERLILFQDISQ 115

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++     +   A  D++T +PNR  F   LT  L+ +  D +    + ++ +D +K+IND
Sbjct: 116 RQAFETELKYLANFDSMTKLPNRTYFNQALTQALESNKKDKHPLY-LFMLGLDGFKEIND 174

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  +GD VL+S+  R+ ++L    ++AR  G+ F ++     ++      A  + + I
Sbjct: 175 TLGHNIGDQVLISVAERLQKILPKDSLIARFGGDEFALLSSKFTHNE-AQLLAQELIQFI 233

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A+P ++ + EI +  SIG A    SK   S +L+ A++A+  AK  G N  + F      
Sbjct: 234 ALPFSIFDNEIYIETSIGIADSDISKADKSTLLRFADIALSEAKLAGKNGYKIFAPEMAH 293

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG-NISSSEFM 758
                  IK+ L   +EN +L + Y P   ++  + +G EAL +W   ++G  +S + F+
Sbjct: 294 KKSEEAKIKQTLRQILENQDLIVHYQPQYNVIQGDFIGFEALARWPESEYGKQVSPAIFI 353

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  I   +L +    +  W  +       I +N+++K L      E ++A++
Sbjct: 354 PLAEQNQLIHIIGEQVLIQSCEQLAFWHARNPNCHFTISVNLSAKQLNHPLFLERLKAIL 413

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
               +   R+    +E+ ++GN E     +  ++ +GI L LDDFGT  S L+YL  +PF
Sbjct: 414 LNYHFPLERLVFEITETAILGNFESIIHSIQTIKDMGIRLALDDFGTGYSSLNYLQKLPF 473

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S      +  K  A++++II +A      +IA+ +   +  + +  +GC+ IQ
Sbjct: 474 DVIKIDQSFTQQLGQCKKTEALVKAIITIADACNMDVIAEGVESNMHHQHVVALGCNKIQ 533

Query: 937 DSHVASPLGFNSILKLLKE 955
             + +  L  + +    + 
Sbjct: 534 GYYYSPALPQHLLEGYCES 552


>gi|254227742|ref|ZP_04921173.1| ggdef domain containing protein [Vibrio sp. Ex25]
 gi|151939784|gb|EDN58611.1| ggdef domain containing protein [Vibrio sp. Ex25]
          Length = 751

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 214/438 (48%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + K+   +L  A  D+LTG+PNR+     +   L           ++M IDID +K +ND
Sbjct: 313 EHKTKLRLLYQANHDHLTGLPNREYLRANIRHWLS----GKGNPFSLMFIDIDNFKSVND 368

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+VL  ++ R+   +    ++ R + + F I L +  + + +   A  + K++
Sbjct: 369 THGHDFGDEVLKQISIRLNTFVNDGRLIIREASDEF-IFLTNRIDEVSVKRLASDLIKAL 427

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P  + + +  ++ SIG A +     T  E+L +A++AMY AK +  N    F      
Sbjct: 428 SEPYEVNDSQFLLSCSIGIACYPHHGETLDELLLSADIAMYQAKKQ-RNVYSLFNQQMQA 486

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +   ++ I++ L LA++   L++VY P + L   +I G+EALI+W   + G +  SEF+ 
Sbjct: 487 THLRKMKIEQRLRLAIDKQALHMVYQPQLNLE-GDIYGVEALIRWSDDELGLVPPSEFIP 545

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  I   ++E    D+           I I INI+ K  +  +    +   I 
Sbjct: 546 VAESTGLMVRIGEQIIENSLTDMAKLT-GNIDTSIQISINISVKQFVHAKFITNLMNAIE 604

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K     S+I L  +E++ + + E+   +  RL  +G  ++LDDFGT  S LS L  +P D
Sbjct: 605 KRGIECSKITLEITENLFIEDLEKFAPICERLHALGFKISLDDFGTGYSSLSMLRTLPID 664

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +      + A  ++++II + KN E  ++A+ +     + EL   GCD IQ 
Sbjct: 665 EVKIDKSFVDHIEHDKKALNMVKNIISIGKNFEMKVLAEGVETLQQLNELKACGCDLIQG 724

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    ++   K+
Sbjct: 725 YFYSKPLSLEDLIAFTKQ 742


>gi|94500006|ref|ZP_01306541.1| sensory box protein [Oceanobacter sp. RED65]
 gi|94427864|gb|EAT12839.1| sensory box protein [Oceanobacter sp. RED65]
          Length = 764

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 137/514 (26%), Positives = 230/514 (44%), Gaps = 15/514 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    +   L    SG+ +   D  R           I G     + G   ++L   
Sbjct: 254 QKALNEQAQFGRLVFDNSGEGILIADAHRVIKAVNSAYCYISGYEQHEVIGLESDFLLKE 313

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           +  D +  R I  S    R G  + E   +  +     + + I    NSN +I  YI + 
Sbjct: 314 NPLD-EKQRDIFKSI--QRNGYWRGETWYKHKEGHAIAIEMMINTQKNSNNEIENYIVLF 370

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT++K++ E I   A  DNLT + NR SF      ++  +     L   ++ ID+D +
Sbjct: 371 SDITDKKQTQELIWQQAHYDNLTQLLNRHSFTQYTQNLIQKA-----LPFALLFIDLDNF 425

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND  G  VGD +L+   +RI + ++  DI+AR  G+ F ++L+   N L        
Sbjct: 426 KQVNDTQGHNVGDALLIEAAKRIKQCVRESDIVARFGGDEFTVLLLGIKNVLSTKRICSD 485

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + K ++ P  L + +  V+ASIG A +        ++ K A+ AMY AKH G N    F 
Sbjct: 486 ITKRLSEPFTLDKEKAYVSASIGIAQFPWDSDNLEDLYKYADQAMYEAKHLGRNRFSFFT 545

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +   +R  I  DL  A+E +E  + Y PI+ L   ++   EALI+W HP+ G IS 
Sbjct: 546 HELQQKASERQRISLDLRQALERNEFQVYYQPIVDLKSHQVHKAEALIRWHHPRDGIISP 605

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL--DNELCE 812
           ++F+ IAEE  +I  I  ++ ++ A     WR     P   I IN +         ++ +
Sbjct: 606 ADFIPIAEESGLIIEIGNWIFKQAAMQTKLWRK-TLYPDFQISINKSPVQFYGNQEDIHQ 664

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                +         I +  +E +++ +    +  L    + GI ++LDDFGT  S LSY
Sbjct: 665 SWSQFLQIINLPGDGISVEITEGLLLDSIPIVKEKLSDFSQSGIQVSLDDFGTGYSALSY 724

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIP 904
           L     D +K + S +      +  ++   +II 
Sbjct: 725 LKKFNIDYIKIDMSFVRNIVNDKYDLILCETIIA 758



 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 1/143 (0%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V         +    ER  LA+  SG  +WDWD+ + +   +PD+   LG     +   
Sbjct: 122 DVTRARKAEDAVKKSEERHRLAMKSSGTRIWDWDVKQQKFYFSPDLVEELGYDGQRLEYN 181

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           + ++   +H +D       +     Y        +R+R  D  +       + + N +  
Sbjct: 182 VDDFYNIVHPDDLKAIEKAIRQHFKYNT-PYHLNYRLRHKDGHYFLYENIGQAIRNQDNL 240

Query: 509 ILRYIGIANDITEQKKSLEGILC 531
           + R+IG + +++ QK   E    
Sbjct: 241 VQRFIGSSKNLSTQKALNEQAQF 263



 Score = 45.7 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 15/121 (12%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND------RDNFRTILDSFVGYRRGRL 479
           D V   P    + G     +   I  W    + ++        ++   L          +
Sbjct: 27  DIVYINPAFTLVFGYTLDEVR-NINTWYRCAYPDESYRRSVLQDWEQQLRQLEQTNSHPV 85

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL------EGILCNA 533
             E  ++  + +   + +   P   ++G   +Y     D+T  +K+       E     A
Sbjct: 86  HLEVTIQCKNGEKKRVEL--YPFKLNDGQHCQYGINFIDVTRARKAEDAVKKSEERHRLA 143

Query: 534 F 534
            
Sbjct: 144 M 144


>gi|323484626|ref|ZP_08089988.1| hypothetical protein HMPREF9474_01739 [Clostridium symbiosum
           WAL-14163]
 gi|323402009|gb|EGA94345.1| hypothetical protein HMPREF9474_01739 [Clostridium symbiosum
           WAL-14163]
          Length = 745

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 124/581 (21%), Positives = 231/581 (39%), Gaps = 25/581 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++     G  + G   + E    A+  S  D V+  D+          +    GL   
Sbjct: 182 MRLRRNTERGRTAPGFDYNREFLYEALASSTDDYVFIGDMKTGIFRYPAAMVEEFGLPGE 241

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      W   IH  D+  F          R      E+R R    ++ W+  R R + 
Sbjct: 242 IVENAAAVWGVLIHPEDKKGFLESNQDIADGRVEHHNIEYRARNVFGEWCWLRCRGRMVR 301

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G    + G   ++ + K  +         D++TG+ NR      L   +     DD 
Sbjct: 302 DNEGKPEYFAGFITNMGK-KNLI---------DHMTGLYNRY----ELEGTVKKHLVDDG 347

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  +M++D+D++K +ND+   + GD+VL    + I  LL     + RL G+ F I++++
Sbjct: 348 RKFGLMILDMDEFKNVNDLYDRSFGDEVLRVTAQMISSLLPSNARMYRLDGDEFAILILN 407

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +          +R  +        ++   T S G+A++        E++K A  ++ H
Sbjct: 408 -GDWDDHIQIFNRIRYKMHRQQEFEGKKYYCTVSAGYAAFPEDGSQYLELVKCANYSLEH 466

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLE 739
           +K  G + +  F           ++  E L  ++E+      + Y P +     ++ G E
Sbjct: 467 SKLLGKDRITCFSPDILPEKERRLELMELLRESIEHGFAGFSVAYQPQVEAATGKLFGAE 526

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +W   K+G+IS  EF+ + E   +I  +  ++  + A     WR     P   + IN
Sbjct: 527 ALARWTCGKYGSISPGEFIPLLERSGLINRLGRWIFSQAAAQCGKWRR--YRPDFRMSIN 584

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   L   ++   M   + +    PS + L  +ES  M   E    +L +L   G +L 
Sbjct: 585 VSYHQLRKGDIVPDMLKKLEQFAMPPSSLTLELTESYFMKEEESRENVLDKLHGAGFTLA 644

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKD 917
           +DDFG   S L  L  IP D VK +   + G TE R     + +I  +  N+   +  + 
Sbjct: 645 MDDFGMGYSSLLSLKNIPVDVVKIDRGFVKGITEDRFNAIFIGAITELCHNVGKQVCLEG 704

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERF 957
           +  E + + +   G + IQ  +   P+      +  L    
Sbjct: 705 VETEEEYRAVRDTGLELIQGFYFGLPVAAEEFERQWLSREL 745



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT I +R++  DRL  +++L+  +  +   V   DI+  + IND  G   GD++L+ +++
Sbjct: 26  LTQIMDRRNGKDRLAELIELARQEQKMLTVVFY-DINGLRLINDTYGHHEGDNLLLYVSK 84

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I E L  PD+L RLS + F + L  E           A+                    
Sbjct: 85  IIEEGLTEPDLLFRLSEDEFILALYDETEDGAAERMEKALELLEKKREQFGIYYDASFCY 144

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              A + S K + +E++  A+  MY  K  
Sbjct: 145 GVTAVYPSDKFSVNEIITRADERMYIQKRN 174


>gi|262395789|ref|YP_003287642.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|262339383|gb|ACY53177.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 763

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 214/438 (48%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + K+   +L  A  D+LTG+PNR+     +   L           ++M IDID +K +ND
Sbjct: 325 EHKTKLRLLYQANHDHLTGLPNREYLRANIRHWLS----GKGNPFSLMFIDIDNFKSVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+VL  ++ R+   +    ++ R + + F I L +  + + +   A  + K++
Sbjct: 381 THGHDFGDEVLKQISIRLNTFVNDGRLIIREASDEF-IFLTNRIDEVSVKRLASDLIKAL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P  + + +  ++ SIG A +     T  E+L +A++AMY AK +  N    F      
Sbjct: 440 SEPYEVNDSQFLLSCSIGIACYPHHGETLDELLLSADIAMYQAKKQ-RNVYSLFNQQMQA 498

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +   ++ I++ L LA++   L++VY P + L   +I G+EALI+W   + G +  SEF+ 
Sbjct: 499 THLRKMKIEQRLRLAIDKQALHMVYQPQLNLE-GDIYGVEALIRWSDDELGLVPPSEFIP 557

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  I   ++E    D+           I I INI+ K  +  +    +   I 
Sbjct: 558 VAESTGLMVRIGEQIIENSLTDMAKLT-GNIDTSIQISINISVKQFVHAKFITNLMNAIE 616

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K     S+I L  +E++ + + E+   +  RL  +G  ++LDDFGT  S LS L  +P D
Sbjct: 617 KRGIECSKITLEITENLFIEDLEKFAPICERLHALGFKISLDDFGTGYSSLSMLRTLPID 676

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +      + A  ++++II + KN E  ++A+ +     + EL   GCD IQ 
Sbjct: 677 EVKIDKSFVDHIEHDKKALNMVKNIISIGKNFEMKVLAEGVETLQQLNELKACGCDLIQG 736

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    ++   K+
Sbjct: 737 YFYSKPLSLEDLIAFTKQ 754


>gi|308049935|ref|YP_003913501.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ferrimonas balearica DSM 9799]
 gi|307632125|gb|ADN76427.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Ferrimonas balearica DSM 9799]
          Length = 718

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/554 (21%), Positives = 238/554 (42%), Gaps = 22/554 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
             +    A+  S   +   +     +         + G  +    G     L      + 
Sbjct: 173 QLDLFRHAMEQSSQRLAIMNADTLEICYVNQAYLRVAGGVAEDYVGKPIQQLMMF-QQNP 231

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           ++ +  L + +    G  + E +V     +  W+  R       NG     +  +ND T 
Sbjct: 232 ESAKLALQTVLE--TGYCRGEGQVVDPQGRVRWIDFRANRFVTENGQ-AYLVLHSNDATA 288

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K     +   A+   LTG+ NR  FL RL         +++    +++ D+D +K +ND
Sbjct: 289 EKAHKAELERMAWHCALTGLYNRAYFLQRL---------NESAPVALLLFDLDGFKALND 339

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           + G  VGD +L  + RR+    +     ++AR+  + F +       +  + D A + R+
Sbjct: 340 LHGHEVGDRLLKEVARRLRHCGERMGASLVARIGADEFVVRFDQVP-AQSLHDIAHSFRE 398

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            + +P+ +  R  +V  S+               +   +L M  AK  G   +    +  
Sbjct: 399 RLILPVPVGGRSYSVQLSVAGVCRDLLDEQVDA-MAALDLTMARAKQLGRLQLFDQALKE 457

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              ++V I++DL  A+   E  L Y P++ +   E+ G EAL++W HP+ G +  + F+ 
Sbjct: 458 SFCEQVQIQQDLRQALARKEFELHYQPLVAMETGEVRGAEALLRWRHPRRGRLGPARFIE 517

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I+ I  ++LE     +  W+     P + + +N+++K LL  +L E     ++
Sbjct: 518 VAEDTGAIEPIGRWVLETALYQLHLWQR--RWPGLEMHVNVSAKQLLGGDLYEICWHQLN 575

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +P  + L  +E+ ++   +    L  +L ++GI L +DDFGT  S + YL  +P  
Sbjct: 576 RYRLTPGTLVLEITETSLLEEIQVVSRLCNQLGELGIVLAIDDFGTGYSSMRYLQRLPVQ 635

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +     + +   I+ +II M + ++  + A+ +  E   + L + GCD +Q 
Sbjct: 636 KLKIDRSFVMDLETSRENREIVPAIIAMGQALDLVVTAEGVETESQRRLLKQWGCDMVQG 695

Query: 938 SHVASPLGFNSILK 951
                P+  +   +
Sbjct: 696 FLYGRPVDPHLFEQ 709


>gi|302135287|ref|ZP_07261277.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 683

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILENAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  S     + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQASIEQPYEAAELAQKILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++ +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFSVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 ERRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVAEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLTYLKQ 674


>gi|221633880|ref|YP_002523106.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159]
 gi|221156526|gb|ACM05653.1| developmental regulator MorA [Thermomicrobium roseum DSM 5159]
          Length = 897

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/551 (24%), Positives = 239/551 (43%), Gaps = 21/551 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPYIHINDR 461
           D ER    +      V+  D     +     +AT+LG      + G + +        DR
Sbjct: 360 DHERTERLISELPIGVFQLDAHGRILRANRALATLLGWERPDELEGQLLSEAF----ADR 415

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              +  L   +G        EFR R  DN+  W+ +  R   +  G  L   G   DI+E
Sbjct: 416 SEAQRWLHQ-LGGDGILAGTEFRWRRRDNRLIWVRVSARADHSPAGQSLVIEGTVEDISE 474

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K   E +   A  D LTGI NR + L+ L   L  +         ++++D+D +K++ND
Sbjct: 475 RKSVEERLAYLARHDTLTGIANRHALLETLQERLARAVRSGR-SGALLLLDLDHFKEVND 533

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG A GD VL ++  R+   L+  D++AR+ G+ F  +L               +   I
Sbjct: 534 RLGHAAGDAVLRAVANRLIGTLRSDDLVARVGGDEFAALLHPVT-REGAECVGRRLLDVI 592

Query: 642 AM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               + L +R I + AS G A +     T  E+L  A+ A+Y AK+RG + +E +  +  
Sbjct: 593 GQIMVPLPDRVIRLRASCGIALFPEHGTTVEELLIAADRALYQAKYRGRDRLEVYEPAIA 652

Query: 701 RSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++        +  A+ N  L L   PI+ L  E I   E LI+    +   +    F 
Sbjct: 653 EPEQPRTAHLSIVQSALANGNLLLFAQPILDLRRERIAAYELLIRLREGER-VLEPGMFF 711

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E L ++   +L++LER         +        I +N++++ L +      ++ L+
Sbjct: 712 PVTEGLGIVPQFDLWVLERAC-------ELNLTSRGRIHLNVSARTLREARHFAVLRDLL 764

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +  ++P ++ L  +E+  + +  ++   L RLR+ G  + LDDFG   S L  L ++P 
Sbjct: 765 ERCPFAPRQLVLEVTETTALIDFVQAHEHLQRLRERGCRIALDDFGVGYSSLYQLRHLPI 824

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +G  +    E     +I+R+I+ +A+ +    IA  +     +  L  +G D+ Q
Sbjct: 825 DFIKIDGMFIVDLAENPVNQSIVRAIVALARAVGAETIAGWVESAETLALLRELGVDHAQ 884

Query: 937 DSHVASPLGFN 947
              +  P    
Sbjct: 885 GFAIGRPEPLA 895


>gi|296270789|ref|YP_003653421.1| diguanylate cyclase/phosphodiesterase [Thermobispora bispora DSM
           43833]
 gi|296093576|gb|ADG89528.1| diguanylate cyclase/phosphodiesterase [Thermobispora bispora DSM
           43833]
          Length = 720

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/433 (27%), Positives = 217/433 (50%), Gaps = 7/433 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D LTG+PNR+  + R    L  +   D  R  ++++D+D++K++ND LG  V
Sbjct: 275 RRDHQATHDGLTGLPNRKMLILRTEEALAAAR--DGERVGLLLLDLDRFKEVNDTLGHPV 332

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +  R+   ++  D++ARL G+ F ++L S  ++    + A  +R +++ P+ L
Sbjct: 333 GDRLLQIIAYRLTHSVRPGDMVARLGGDEFAVLLPSIRDAQAAKEVASRLRVALSEPVRL 392

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVM 706
                 + ASIG A +         +L+ +++AMY AK    G             +R+ 
Sbjct: 393 EGMTFDLDASIGIALYPDHAPDFELLLQRSDVAMYLAKENRTGVEFYVPGKDRNSPERLS 452

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A++  EL L Y P + L D  + G+EAL++W HP+ G IS ++F+ +AE+  +
Sbjct: 453 LLGDLRRAIDAGELELHYQPKVNLADGRVEGMEALVRWSHPERGPISPADFVPLAEQSYL 512

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           ++ +   +L R       W       P  + +N++++DLLD  L E ++A +++      
Sbjct: 513 MRELTHIVLRRALDQAARWWRDGLEVP--VSVNVSARDLLDTGLPEQLEAGLAELGLPAR 570

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I+L  +E ++M     +   +G L ++G+ L LDDFGT  S L  L  +P   VK + S
Sbjct: 571 AIQLEVTERILMTEQAFTAETIGTLARLGVELALDDFGTGYSSLVRLQRLPVSEVKIDRS 630

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RSI+ + +++    +A+ +        L ++GC   Q   +A P+
Sbjct: 631 FIRRIAESREDERIVRSIVDLVRSLGLRSVAEGVESHEIAVRLRKLGCQAGQGWWLAEPM 690

Query: 945 GFNSILKLLKERF 957
             +     L+ R 
Sbjct: 691 AADEATVWLRARL 703


>gi|319426571|gb|ADV54645.1| bifunctional diguanylate cyclase with GAF and PAS sensory
           domains/signaling protein with EAL domain protein
           [Shewanella putrefaciens 200]
          Length = 747

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/589 (20%), Positives = 242/589 (41%), Gaps = 28/589 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILG- 439
            T+I         +       E Q LAV         +   + +   +        I+  
Sbjct: 167 LTLISEAARLASLAIERSRSMEFQRLAVKIFDRLPLALVITNSLDAVLYANAAFKQIVQP 226

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               S +   + +L     ++ D     L +         Q E      + +  ++ + +
Sbjct: 227 QTVESSNFHPKTFLSQSEPHELDMLFQHLSA-----GKMWQGELVGLRGNGETFYLDLTV 281

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                 + +   +  + +DI+E+KK+ + I   A  D+LTG+ NR +   ++ T++    
Sbjct: 282 TVFREPHSNYNGFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFRQIQTLITSDC 341

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                  + M++D+D +K++ND  G   GD +L+ +  +I   L    + ARL G+ F +
Sbjct: 342 LTPG--FSFMLMDLDNFKQVNDTYGHDKGDMLLLQVVGQIKTCLDSSIMFARLGGDEFAL 399

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAE 678
           +L        ++  A  + K++     L  ++ +  + SIG A +    +   ++L  A+
Sbjct: 400 LLPGVVTQKALSQLAEKIIKNVYRRYELSKDKGVYSSVSIGIARFPEDALNLEQLLNCAD 459

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY +K  G N    F     ++      +   L  A++     L Y PI+      IV
Sbjct: 460 QAMYISKANGRNRYHFFTEQMQQNAERIANLHTLLKQALDQQAFELYYQPIVNATTGLIV 519

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E L++W H +   I+  EF+ IAE    +  I   +     + I   +D      I +
Sbjct: 520 RAEVLLRWQH-EGQFIAPDEFIPIAENS--VVDIGRNVRRCAMQTIKEMQDHGWG--ISL 574

Query: 797 LINIASKDL----LDNELCEGMQALISKTLY---SPSRIKLSFSESVVMGNPERSRLLLG 849
            +N+++ +     L +  C+    +I +          I L  +ES++M        +L 
Sbjct: 575 AVNVSTFEFWSHELQDAFCDSFADIIEELGLVDFPYELITLEITESLLMKQHVHLIKVLN 634

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            LR  G+ ++LDDFGT  S LSYL   P D +K + S +      E+  A++ +I+ ++ 
Sbjct: 635 ELRARGVKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLAEGERHEALVEAIVRLSH 694

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  ++ A+ +  E  +K +       IQ      P+   +  +LL ++
Sbjct: 695 ALNLSVTAEGVETEAQLKFVMANDIQEIQGYLYHQPMPKAAFFELLAKQ 743


>gi|292490653|ref|YP_003526092.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291579248|gb|ADE13705.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 908

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 234/575 (40%), Gaps = 16/575 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                +  L +    + +F D +R  + +    D V   D         P    ++G   
Sbjct: 332 TLIRFRKTLVSQGAQEALFLDHQRAQVTLESIADAVITIDSQGRIDYLNPLAEELIGTTQ 391

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIR 500
               G     +   +    R +    + +++       +     ++ A +Q   +   I 
Sbjct: 392 SQAQGKSLEKVTCLLDEESRSHVIRDIAAWLAQEPVESRSCTALLQDARDQELIVQTSIA 451

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ +S   I   + +  DIT  +     +   A  D LTG+ NR+ F  RL   LD    
Sbjct: 452 PLRDSQDRIFGAVLVLRDITPLRALASQLSYQATHDVLTGLINRREFEVRLRQALDDVCQ 511

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           + N    +  +D+D++K +ND  G   GD +L  L   + E ++  D L RL G+ FG++
Sbjct: 512 N-NTHHVLCYLDLDQFKVVNDTCGHLAGDKLLRQLATLLQERIREADCLGRLGGDEFGVL 570

Query: 621 LISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           L+  +   +    A ++R  I     N   +   +  SIG            E+L  A+ 
Sbjct: 571 LLGCH-LDQAQGIAESLRILIRDFRFNWKGKTFQLGVSIGLVPLARGSGGLEEVLSAADT 629

Query: 680 AMYHAKHRGGNHVESF----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEE 734
           A Y AK +G + + ++     +       +     +  A E S   + Y PI     +E 
Sbjct: 630 ACYVAKDQGRDRIHTYRLDDCIVERHHGEMQWVARIQQAFEESRFLIYYQPIRALNKEEH 689

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   E L++        I    F+  AE   ++ A++ +++      +    ++ ++   
Sbjct: 690 LCHGEVLLRMKGEDESLIPPMAFIPAAERYRLMSALDRWVISNTFIAL----EEHSIGQA 745

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I IN++ + + D    + +   + ++  +P  I    +E+  + N + +   +  L++I
Sbjct: 746 LIGINLSGQSVCDELFLKFVIEQLQRSPVNPRMICFEITETAAVANFDSAIRFIRALKEI 805

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G    LDDFG+  S  +YL  +P D +K +GS +          A++ +I  + K +   
Sbjct: 806 GCRFALDDFGSGLSSFNYLKNLPVDYLKIDGSFVKDMVDDPVDYAMVEAIHKVGKVMGLK 865

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            IA+ +  E  +++L  +G DY+Q   +  P  F+
Sbjct: 866 TIAEFVENEAILEKLRGIGVDYVQGLIIGGPRPFH 900


>gi|285018448|ref|YP_003376159.1| gaf domain/ggdef domain/eal domain protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473666|emb|CBA16169.1| putative gaf domain/ggdef domain/eal domain protein [Xanthomonas
           albilineans]
          Length = 962

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 217/434 (50%), Gaps = 12/434 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+  + + +   A  D LTG+PNR   LDRL   ++ +   +     V+ +D+D++K 
Sbjct: 532 IAERWLAEQRLTHQAMHDALTGLPNRLQLLDRLGEAIERARGGECKTFAVLFLDLDRFKS 591

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G A GD++L+ + RRI   ++  D++ARL G+ F I++  +       + A  + 
Sbjct: 592 VNDSIGHAAGDEMLIQVARRIVSTIRCNDLVARLGGDEFAILMPCDIGVDGACELARRLM 651

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P+ +  RE+  + S+G A W        E+L++A+ AMY AK +  +    F  +
Sbjct: 652 HVLSQPMWIAGRELFPSGSLGIAFWHPRYSHGEELLRDADAAMYRAKAQTKDRCAVFDEA 711

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + ++ +L  A+ + +    Y PI+RL D +++G EAL++W H + G +  S+
Sbjct: 712 MHEAALRSLDLEAELRRAINHGDFEPFYQPIVRLNDGQVIGHEALLRWHHDRRGMLLPSQ 771

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +I+ ++  + E++ R ++  +        ++ +N++ +     +  E +  
Sbjct: 772 FVDLGEESGLIEQVDWLLYEQVIRRLVQEQ------DGYVSVNVSPRHFRTADFTERLFG 825

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI      P R+++  +E  ++ +   +  +L  LR+ G+   LDDFGT  S LS L   
Sbjct: 826 LIDAHGADPCRLRVEITEVALLDDATHTHDILQSLRERGVLAQLDDFGTGFSALSCLHRF 885

Query: 877 PFDTVKFNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           P   +K + S + G  ++       ++R I+ +A  +    + + I  E  +  L  +GC
Sbjct: 886 PISVLKIDQSFVAGLHDEAGAGSHTMVRGILALADTLGIETVGEGIETEQQLATLRELGC 945

Query: 933 DYIQDSHVASPLGF 946
            Y Q   +  P+  
Sbjct: 946 TYGQGYLLGRPMPA 959


>gi|83944985|ref|ZP_00957351.1| sensory box/GGDEF family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851767|gb|EAP89622.1| sensory box/GGDEF family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 686

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 216/441 (48%), Gaps = 18/441 (4%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A+ D +T +PNR+ F   +   +   AT+   +  ++ +D+D++K++ND LGI 
Sbjct: 238 KRVHRLAYVDMITELPNRERFRKEVER-VAREATESGEQGAILFLDLDRFKRVNDSLGIG 296

Query: 587 VGDDVLVSLTRRIGELLKFPDI-----------LARLSGNRFGIILISENNSLKIADFAI 635
            GD +L ++ RR+ E ++  D+           +ARL G+ F ++L    +S   A  A 
Sbjct: 297 EGDRLLEAVGRRLREAVRGWDLSQGELTKEPSMVARLGGDEFTVLLPRLRDSADAARLAR 356

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  S+  P  +   ++ +  S G A +         +L++A+LAM   K  GGN  E F
Sbjct: 357 RIVDSVRRPFEISGHQVFLGISAGIACFPRDGSDPETLLRHADLAMASVKRAGGNACEFF 416

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              ++    +R++++ +L  AV + +L + Y P + ++D  I G EAL++W HP  G +S
Sbjct: 417 ESSMNQSAFERLVLENELREAVRDDQLVVFYQPKVSMVDGSIAGAEALVRWRHPTAGLLS 476

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  I  ++L R   +    R++     I + +N+++         + 
Sbjct: 477 PGAFIQAAEECGLIGEIGDWVLRRACHEAQILRERG--MNIPVAVNVSAMQFESEGFSQT 534

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   +  +   P  ++L  +ES  M  PER    +  LR++G++  +DDFGT  S LSYL
Sbjct: 535 VLEALQDSGLPPELLELELTESTAMREPERVIEQIEPLRRLGVTFAIDDFGTGHSSLSYL 594

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +PFD  K + S +   ++      ++ +I+ MAK+++   +A+ +      + L  +G
Sbjct: 595 TRMPFDVFKIDQSFVRDMSQDEHARIVVETILAMAKSLKLKTVAEGVETNDQYRALRALG 654

Query: 932 CDYIQDSHVASPLGFNSILKL 952
               Q      P+ F  +   
Sbjct: 655 ATLAQGYLFGRPMPFAELEAF 675


>gi|320325677|gb|EFW81739.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327040|gb|EFW83054.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 763

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 243/468 (51%), Gaps = 14/468 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T 
Sbjct: 262 LQGKEHDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HTY 317

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +N    VM +DID +K+IND LG   GD++L  +  RI    +  D+++R  G+ F  IL
Sbjct: 318 NNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CIL 376

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA+
Sbjct: 377 LSIPDYEEARHLAYRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLAL 436

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGL 738
           Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PI+ +    +  L
Sbjct: 437 YQSKGNGRNRVNFFSPALKTRASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKL 496

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +     + I +
Sbjct: 497 EALVRWNHPQHGLLAPGRFIGIAEANGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIITV 555

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N ++  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL
Sbjct: 556 NCSALTLGRDELVEEVEQALADADVAPGRLELEVTENALMGNISNTILMLKHIRSLGVSL 615

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ +
Sbjct: 616 SIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLHLKVVTE 675

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
            +     ++ L+R G DY+Q    + P     IL L   + ER P  +
Sbjct: 676 GVETPAQLEFLSRFGSDYVQGYLFSKPQPLERILPLARQMNEREPTTR 723


>gi|71735567|ref|YP_273675.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556120|gb|AAZ35331.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 763

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 243/468 (51%), Gaps = 14/468 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T 
Sbjct: 262 LQGKEHDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HTY 317

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +N    VM +DID +K+IND LG   GD++L  +  RI    +  D+++R  G+ F  IL
Sbjct: 318 NNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CIL 376

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA+
Sbjct: 377 LSIPDYEEARHLAYRVMQKMKETIALAGRRMVMTTSIGIAMFPRDGSTCDELLKHADLAL 436

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGL 738
           Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PI+ +    +  L
Sbjct: 437 YQSKGNGRNRVNFFSPALKTRASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKL 496

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +     + I +
Sbjct: 497 EALVRWNHPQHGLLAPGRFIGIAEANGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIITV 555

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N ++  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL
Sbjct: 556 NCSALTLGRDELVEEVEQALADADVAPGRLELEVTENALMGNISNTILMLKHIRSLGVSL 615

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ +
Sbjct: 616 SIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLHLKVVTE 675

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
            +     ++ L+R G DY+Q    + P     IL L   + ER P  +
Sbjct: 676 GVETPAQLEFLSRFGSDYVQGYLFSKPQPLERILPLARQMNEREPTTR 723


>gi|253996465|ref|YP_003048529.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983144|gb|ACT48002.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylotenera mobilis JLW8]
          Length = 781

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 234/457 (51%), Gaps = 10/457 (2%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G +          T        I   A+ D +TG+PNR SF+  L   ++ S  + 
Sbjct: 329 KDELGKLSSAFSSMR--TAIADRERSITRLAYWDEMTGLPNRASFMKELNIAINKSEIN- 385

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIIL 621
           +   +V+V+++D++K+IN+VLG   G+ +L +++ RI ++ +   D++AR SG+ F ++L
Sbjct: 386 HEPLSVLVMNLDRFKQINNVLGHDFGNQLLHAVSIRISQVFRKDNDVVARTSGDEFAVLL 445

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               ++    + A  + ++   PI L +  + ++A IG AS+        ++L  AE+AM
Sbjct: 446 P-ATDASLAVNIAQKLLQAFEKPIQLEDNFVDISAGIGIASYPVHGNQIEQLLNFAEVAM 504

Query: 682 YHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             +K  + G  V         +  + +  +L  ++ N+EL +   P + L    +  +EA
Sbjct: 505 QVSKAQKSGPVVFQPSFDVGSNVNLTLVSELKKSIYNNELSVFVQPKVNLQSRAVRSVEA 564

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP  G I   +F+  AE+  +I+ + L+M+   A+  ++W  +     I I +NI
Sbjct: 565 LIRWKHPTRGMIFPDQFIPFAEQTGLIRDVTLWMIAEAAKVSVAWLQKG--MSIPIAVNI 622

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++DL+D++    +  ++  T  + S I L  +ES +M +P R++  L  L ++GI L +
Sbjct: 623 SARDLIDSDFPNKVAEILKATGSNTSLISLEVTESSIMDDPHRAKQTLLHLSEMGIKLAI 682

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL  +P   +K + S +     ++    I+ S I +A N+   ++A+ +
Sbjct: 683 DDFGTGYSSLSYLKELPVSELKIDKSFVMHIEASQNDRIIVNSTIELAHNMGLHVVAEGV 742

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 K L  MGCDY Q  +++ P+  +      ++
Sbjct: 743 ENIDAWKSLQEMGCDYGQGYYMSRPIPISDFETWYQQ 779


>gi|289626717|ref|ZP_06459671.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289648005|ref|ZP_06479348.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867293|gb|EGH02002.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 763

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 243/468 (51%), Gaps = 14/468 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T 
Sbjct: 262 LQGKEHDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HTY 317

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +N    VM +DID +K+IND LG   GD++L  +  RI    +  D+++R  G+ F  IL
Sbjct: 318 NNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CIL 376

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA+
Sbjct: 377 LSIPDYEEARHLAYRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLAL 436

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGL 738
           Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PI+ +    +  L
Sbjct: 437 YQSKDNGRNRVNFFSPALKTRASLELHLEEELRNALREETGLQVYYQPIVDMHTGHVAKL 496

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +     + I +
Sbjct: 497 EALVRWNHPQHGLLAPGRFIGIAEANGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIITV 555

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N ++  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL
Sbjct: 556 NCSALTLGRDELVEEVEQALADADVAPGRLELEVTENALMGNISNTILMLKHIRSLGVSL 615

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ +
Sbjct: 616 SIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLHLKVVTE 675

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
            +     ++ L+R G DY+Q    + P     IL L   + ER P  +
Sbjct: 676 GVETPAQLEFLSRFGSDYVQGYLFSKPQPLERILPLARQMNEREPTTR 723


>gi|70728684|ref|YP_258433.1| TPR domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68342983|gb|AAY90589.1| signaling repeat/GGDEF domain/EAL domain protein [Pseudomonas
           fluorescens Pf-5]
          Length = 759

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 227/443 (51%), Gaps = 9/443 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L    T       VM +DID +K+
Sbjct: 276 LSQLDQARVSLQQVAHYDALTNLINRRGFNQLFAEKLIE-KTTFGGMLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAM 637
           IND LG   GD++L  +   I    +   D++ARL G+ F  ILI+  +  +    A  +
Sbjct: 335 INDSLGHDAGDELLKVIAGHIKSSTRSHEDVVARLGGDEF-CILINLYDREEARQMAQRI 393

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +  PI L  R + +T SIG + +     T  E+LKNA+LA+Y +K  G N +  F  
Sbjct: 394 MQKMKEPIELGGRRMVMTTSIGISVFPDDGKTCEELLKNADLALYQSKDCGRNSLHFFNS 453

Query: 698 S--SFRSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +  +  + ++E+L  A+ + + L L Y PI  L    +  LEALI+W HP+ G ++ 
Sbjct: 454 HLKTRATLELQLEEELRNALRDDQGLLLYYQPIYDLKSGRVTKLEALIRWQHPQHGLLTP 513

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   MI  ++ ++L +   D+           + I +N ++ +L   EL   +
Sbjct: 514 DRFISIAEANGMIAELDNWVLRKACADLAYLSRHGCGE-LKIAVNCSALNLTREELAGEI 572

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           ++ + +   +P R++L  +E+ +MGN   +  LL ++R +G+SL++DDFGT  S L+YL 
Sbjct: 573 ESALRQAQVAPQRLELEVTENALMGNIASTLALLKQIRGLGVSLSIDDFGTGYSSLAYLK 632

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P +T+K + S +     + + + I+++II MA  +   ++ + +        L   GC
Sbjct: 633 RLPLNTLKIDRSFIQDIPKSTQDMEIVQAIIIMAHTLHLQVVTEGVETPEQQAFLQHHGC 692

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           DY+Q   ++ P+    +  +L+E
Sbjct: 693 DYLQGYLLSHPVPLRELRGVLEE 715


>gi|126172753|ref|YP_001048902.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125995958|gb|ABN60033.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 577

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 208/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +    +    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDY-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+ +  R+ E+L+  DI+ARL G+ F +++   +        A  + K 
Sbjct: 187 DTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANRLLKV 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A++ +E  + Y   +     ++VG+EALI+W HP  G I+  +F+
Sbjct: 307 KEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISW--RDQANMPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ ++  I+ ++LE+       W  + Q       I +N+++  + +  L + +  
Sbjct: 367 PIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPLGQEFTIAVNLSASQIGNENLFDKIVH 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++KT      ++L  +E+ ++ +P     +L R+  +G+   LDDFGT  S L ++   
Sbjct: 427 TLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ +      +  T   C  
Sbjct: 487 PISVLKIDKSFVASYDKDEKDTRLLAALLNFAHGFNVISVAEGVETFEQAEFCTARHCTV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL   +   
Sbjct: 547 LQGYLFSRPLDAAAFEA 563


>gi|110635143|ref|YP_675351.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1]
 gi|110286127|gb|ABG64186.1| diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1]
          Length = 769

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/674 (20%), Positives = 277/674 (41%), Gaps = 46/674 (6%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
            F   F YP   A +  + +    L       Y              A +++      + 
Sbjct: 105 AFSSVFLYPDQFAELGALAINLASLVTVVGRNYGS------------ARMVVIFTTTMMA 152

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL----ATGYFSQGIFSDGERQSLAV 411
             +   L    +   ++G LVL    I     + V           +       R   A+
Sbjct: 153 PIMAGLLLRAELPYVVLGLLVLPFGYIVVRSAEEVRNILARAVEEGRKADELARRFDRAL 212

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWL-------PYIHINDRDN 463
                 +  +      V      A  L   +S  + G   + L         +   D D 
Sbjct: 213 NTMSHGLVMFSPQGRVVVANAQAAEFLSFQSSQQLLGRTLDALLMRGLAGNMLSPKDFDY 272

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R  L   +   RGR      +   D ++     R        G     +    ++T++ 
Sbjct: 273 ARAQLRRALSKGRGRKVL---LALTDGRYIEFSAR-------EGREELRVLTFEEVTQRV 322

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   I   A  D+LT +PNR  F + +   +  +A D++    + V+D+D +K IND L
Sbjct: 323 EAEAKIRHMARYDSLTNLPNRAYFQELVREFM--AAGDESRLCGLAVMDLDDFKTINDTL 380

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD ++ ++  R+ E       + R  G+ F +      +    A+    +  ++  
Sbjct: 381 GHPVGDGLIYAVAERLAEFESGSVKVGRFGGDEFMVYFDRVEDETDFANQFNVIFSALQG 440

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +++    + + AS G             +   A+LA+Y+AK +G N    F      + 
Sbjct: 441 EVDIAGHLLRIQASGGAVVVPVRDGDLDMITVKADLALYNAKEQGKNCWRLFEADMDAAF 500

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    +K +L  A+++  L +VY PI+ +    I   EAL +WDHP  G +S + F+ +A
Sbjct: 501 RSRQIMKSELRSAIQSRNLRVVYQPIVDVRTMRISDCEALCRWDHPDLGPVSPAIFIPLA 560

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE+ +I  I+ F+LE   ++ ++W          + +N+++KD     + + ++  ++K+
Sbjct: 561 EEMGLISEISAFVLEAACQECMNWPQHIG-----VSVNLSAKDFQSGAVIDKVRETLNKS 615

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P R+++  +E+ ++ + + +RL +  L+++GI + LDDFGT  S LSYL  +P D V
Sbjct: 616 GIAPERLEIEVTETALLYDKDATRLYIEGLKELGIRIALDDFGTGYSSLSYLHTLPLDRV 675

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT-RMGCDYIQDS 938
           K + S +       +   +L+S++ +++ +   +  + +     +K L   +  D +Q  
Sbjct: 676 KIDSSFLHDVTKNPRSHKLLKSVVQLSRGLGLDVTVEGVETFQQLKLLETSVKPDRVQGF 735

Query: 939 HVASPLGFNSILKL 952
              S L  + I  +
Sbjct: 736 LFGSALSASGIKTM 749


>gi|330984890|gb|EGH82993.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 763

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/709 (22%), Positives = 304/709 (42%), Gaps = 31/709 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
           +        G    +  A + I   +     + +  + +   A  +    + + +  M  
Sbjct: 25  NLFLVALAYGVACAASFATLDIADRVIQVDAIKSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 334 YERA--VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           +E    +       L  +  + +   +  R             +  +V+  G +V+ ++ 
Sbjct: 85  FEAPLKISYDLTVTLASLLIVLITALVAMRALTIPELTLRRCLISSLVMGTGISVMHYLG 144

Query: 392 ATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +   S        R   A+         +    + R           +       + G 
Sbjct: 145 MSAMRSAATQYYEPRM-FALSIVVAVLSSIALLTLSRHLRQYNGMFHQMFRYGVSLLLG- 202

Query: 449 IRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP----- 501
               L  +H+      R ++   + +         +  +  A      +   I       
Sbjct: 203 --AGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAITLLIIAGSISAAMADK 260

Query: 502 -MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T
Sbjct: 261 KLQGKEHDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HT 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    VM +DID +K+IND LG   GD++L  +  RI    +  D+++R  G+ F  I
Sbjct: 317 YNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CI 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA
Sbjct: 376 LLSIPDYEEARHLAYRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLA 435

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVG 737
           +Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PI+ +    +  
Sbjct: 436 LYQSKGNGRNRVNFFSPALKTRASLELHLEEELRNALREETGLQVYYQPIVDMHTGHVAK 495

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LEAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +     + I 
Sbjct: 496 LEALVRWNHPQHGLLAPGRFIGIAEANGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIIT 554

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N ++  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+S
Sbjct: 555 VNCSALTLGRDELVEEVEQALADADVAPGRLELEVTENALMGNISNTILMLKHIRSLGVS 614

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ 
Sbjct: 615 LSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLHLKVVT 674

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
           + +     ++ L+R G DY+Q    + P     IL L   + ER P  +
Sbjct: 675 EGVETPAQLEFLSRFGSDYVQGYLFSKPQPLERILPLARQMNEREPTTR 723


>gi|163739303|ref|ZP_02146714.1| aspartate-semialdehyde dehydrogenase [Phaeobacter gallaeciensis
           BS107]
 gi|163742063|ref|ZP_02149452.1| diguanylate cyclase/phosphodiesterase [Phaeobacter gallaeciensis
           2.10]
 gi|161384784|gb|EDQ09164.1| diguanylate cyclase/phosphodiesterase [Phaeobacter gallaeciensis
           2.10]
 gi|161387373|gb|EDQ11731.1| aspartate-semialdehyde dehydrogenase [Phaeobacter gallaeciensis
           BS107]
          Length = 684

 Score =  432 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 214/445 (48%), Gaps = 10/445 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LTG+PNR +   ++ ++ +L   D+  R  V+ +D++ +K+IND+ 
Sbjct: 245 EARNQLQHAALHDPLTGLPNRMALTRKMASLTELLERDETERVAVLTLDLNLFKEINDLY 304

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD VL ++  R+  +L+  + +AR+ G+ F  +        ++  FA  +      
Sbjct: 305 GHSAGDSVLTTVANRLNSVLEKDEFIARVGGDEFVALKQGFRRVDQVLAFAERLHALTVE 364

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P++       +  +IG A+         ++L  +++AMY AK     H+  F     + +
Sbjct: 365 PVDFDNTSAIIGVAIGVATSLEDGRDIRDLLHKSDVAMYRAKADADRHIYLFNAQMEKHN 424

Query: 704 RVMIK--EDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R  ++   DL  A     +  L Y     L     VG E L++W+HP  G +S   F+ I
Sbjct: 425 RARLELVSDLRQACIAGDQFELAYQLQNDLSSLAPVGFEVLLRWNHPTKGRVSPDTFIPI 484

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ I L++L    ++  SW          I +N+A + L+     E +  ++ +
Sbjct: 485 AEETGLIREIGLWVLRTACQEASSWP-----GDFNIAVNVAPQQLMQPSFAEHVSDILLE 539

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T     R++L  +E+ ++ +   +  ++ +L+ +G+ + +DDFGT  S L+ L   PFD 
Sbjct: 540 TGLPAERLELEITEASIIDDQVHTLKVMQQLKTMGLRIAMDDFGTGYSSLAMLQTFPFDK 599

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       +R AI+RS + +   +   ++A+ +  E +++ L    C  +Q  
Sbjct: 600 IKIDQSFVQNVHIDAQRAAIVRSTLLLGAALNIPVLAEGVEVEDELQFLRMENCSSVQGF 659

Query: 939 HVASPLGFNSILKLLKERFPLVKNT 963
           +   P+  + + ++++   P  K  
Sbjct: 660 YFGKPMTRDEMREVVQANQPKKKTA 684


>gi|311695243|gb|ADP98116.1| sensory box sensor/GGDEF/EAL domain protein [marine bacterium HP15]
          Length = 686

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 216/438 (49%), Gaps = 8/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++ + +   +  D LTG+P+R +F++ L   ++ +A   N + +++V  ID +K +N+
Sbjct: 241 HREAEDRVSRLSRYDQLTGLPSRDTFMELLVRDIEDAARR-NAQLSLIVCGIDDFKSVNE 299

Query: 582 VLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   GD +L ++  R+   L      +ARL  ++F ++     +  + AD A  +   
Sbjct: 300 QCGFRSGDLILQTVADRLTNKLDNARFTIARLGSDQFVVVQKGLRDGFQAADTAERILAC 359

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +  P+ + ++ I+++A++G A + S    +  +L++AE  M  AK  G NH + +   + 
Sbjct: 360 VNEPMLVEDQNISISATLGVALYPSDTSKADRLLQSAEQTMTLAKQNGHNHFQFYVASID 419

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR  +++DL  A+ N + +LVY P I L  + ++G EAL++W+HP  G +    F+
Sbjct: 420 QEIRDRKQLEKDLSQALGNHQFHLVYQPQINLESKRVIGAEALLRWEHPTRGTVPPDFFI 479

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    I  I  ++L++       W       P+ I +N+++  L    + + +   +
Sbjct: 480 PVAEANGSIVEIGQWVLDQACWQAARWASDG--SPLRIAVNLSAVQLRQESIVDDILDTL 537

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +      R++L  +E+  M N   +   L RL K GIS+ +DDFGT  S L+YL  +P 
Sbjct: 538 RRHKIPAGRLELEVTETSFMTNLSDAVAKLHRLNKAGISIAVDDFGTGYSSLTYLKQMPV 597

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +      E+   I  +II + K++  +++A+ +        L++ GC   Q
Sbjct: 598 QHLKIDKQFIRDLLVNEEDTRIANTIIDLGKSLNLSVVAEGVETAEQEYYLSQRGCKLAQ 657

Query: 937 DSHVASPLGFNSILKLLK 954
               + PL        +K
Sbjct: 658 GYFFSKPLPPREFETFVK 675


>gi|90581232|ref|ZP_01237030.1| hypothetical protein VAS14_18439 [Vibrio angustum S14]
 gi|90437603|gb|EAS62796.1| hypothetical protein VAS14_18439 [Vibrio angustum S14]
          Length = 650

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/549 (22%), Positives = 243/549 (44%), Gaps = 27/549 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R+ LA     ++   ++   + V+         G         + N   ++   D D  +
Sbjct: 116 RRELAFSDYSNLALLFNEQGNLVSANTVFTKTYG-------AELSNLASFV--GDSDIAQ 166

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +         +     R+        W  I  + +S+ +  +L+ +    +IT++K++
Sbjct: 167 QWISDAKNNLNLKHS---RLCWTGKNHIWFNIETKWLSDKSQLLLQVV----NITKEKEN 219

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
           L+    NA  D LTG+ NR+     L      ++   +L   ++ +D+D +K IND  G 
Sbjct: 220 LQRERYNAEHDFLTGLMNRRGISTAL-----KASHLSSLPYHLLFLDLDSFKLINDTYGH 274

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A+GD +L ++  R+ + ++   ++AR  G+ F II + +  +  +      +  ++  P 
Sbjct: 275 AIGDKLLRAVAIRLLDTIRGRGLVARFGGDEF-IIQVEDRYASNLLQLTQEIISALNSPF 333

Query: 646 NLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            +    EI++  SIG A +     +   ++  A++AM+ AK  G N    F+     +  
Sbjct: 334 YIKNIGEISIGCSIGTAQYPKDANSFETLITQADMAMHCAKKHGRNCSYHFQPHLAETLY 393

Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  L  A+E  +  L Y PII L    + G EALI+W     G++S +EF+ +AE
Sbjct: 394 RKNALRHHLSQALEIKDFELYYQPIIDLNTMLLKGFEALIRWYDDSLGHVSPAEFIPLAE 453

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  I  ++L    + +  W  Q     + + IN++   L    L + ++A+I +  
Sbjct: 454 ETGQIVPIGSWVLRNACKQLEKWNQQY-DTKLIMSINLSRAQLKM-SLLDELKAIIEEYN 511

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+++ L  +ES ++     +   L  +  +G  L LDDFGT  S LS L  +P  TVK
Sbjct: 512 IDPAQVALEITESAMLQEFSEAMPCLDAIAALGFELYLDDFGTGYSSLSQLQNLPISTVK 571

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + S +    +   AI+ +   +   +   ++A+ +  +  ++ +     +Y Q  +   
Sbjct: 572 LDQSFVQNEHDSGKAIVEATKAICNKLNLKVVAEGVETKEQLEYIQSCNFNYCQGYYFNK 631

Query: 943 PLGFNSILK 951
           PL  + + K
Sbjct: 632 PLSVSELEK 640


>gi|37678200|ref|NP_932809.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37196939|dbj|BAC92780.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 753

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 202/427 (47%), Gaps = 10/427 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR+ F D L  IL       +    ++ +DID +K+IND LG  V
Sbjct: 322 QLKKLANTDMLTGLDNRRKFTDVLNQILQKPDALAHCH-ALLYLDIDNFKQINDQLGHYV 380

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  + +R+   +     + R+SG+ F ++L        +     A+  +++ P   
Sbjct: 381 GDQVLKVVAQRLCHHVSDAQSITRISGDEFAVLLEY-QEIDSLKARLSALIVALSQPSEH 439

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
           +     +T SIG           + ++++ + AMY AK +G N    F   +     +++
Sbjct: 440 IPNSHRLTVSIGVVLIPQDGQDLTLLMQHVDFAMYQAKSQGRNQYCFFDRLMKLRDDEKI 499

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            + E L +A+E ++  L Y PI  +   +I   EALI+W HP  G +  + F+ +AE+  
Sbjct: 500 QLIESLKIAIEQNQFVLHYQPIYDIRSHQIHCYEALIRWQHPTKGLLFPASFIELAEQSG 559

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I   +L +  + I     +  +    + INI++  L D +L E    +I +     
Sbjct: 560 LINEIGDCVLAQACQFIAQTAQEKPI----VSINISASQLSDPQLFERFIGIIQQYGVDA 615

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +K   +E+ +M N +    +L + +++GI + +DDFGT  S L+ L  +P + +K + 
Sbjct: 616 HSLKFELTETTLMQNIQSCTNILLKFKQLGIQIAIDDFGTGYSSLAVLKDVPANYLKIDK 675

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           + +SII +A +++  +IA+ +      + L +  CD+ Q      P
Sbjct: 676 SFIDQINSNTGDQKVAQSIITLAHHLDMQVIAEGVEQIEQEELLAQFQCDFGQGYLFGRP 735

Query: 944 LGFNSIL 950
              +S+L
Sbjct: 736 APVDSLL 742


>gi|240142670|ref|YP_002967183.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium extorquens AM1]
 gi|240012617|gb|ACS43842.1| Putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium extorquens AM1]
          Length = 630

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 128/564 (22%), Positives = 240/564 (42%), Gaps = 40/564 (7%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNF 464
           + A+      +  +D            A +LGL  G++                + +   
Sbjct: 99  AEALRSLPQGIATFDADGRLRLANDRFAAVLGLDPGTVRPGTHASEIAASCGVPSAQALL 158

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L + +           R                            + +A D T + +
Sbjct: 159 EAGLVTTLATGTAVQLSVSRTTRG----------------------GTVVLAEDATARTE 196

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   A  D LT +PNR +FL  +   ++           ++ ID+D++K++ND LG
Sbjct: 197 AERRIRRLAQTDGLTELPNRTAFLAGVDREIE-----GGTPFALLCIDLDRFKEVNDTLG 251

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L  ++ R+  LL+  D+ AR  G+ F ++  + ++  + A  A+ +  +I  P
Sbjct: 252 HPVGDALLREVSGRLRGLLRADDVAARFGGDEFVVLQRNASDVREAAALAMRIVDAIGKP 311

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702
             +    I + AS+G A          E+ + A+LA+Y AK  G     SF  S      
Sbjct: 312 FRVEGYRIDIGASVGIACSPIDGNVRDELHRKADLALYRAKAAGRGTWRSFDQSMDEEIR 371

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  ++  +  A+   E  + Y PI+         +EAL++W +     + +S F+ IAE
Sbjct: 372 HRHAVETAMRRAILRKEFAIHYQPIVDAGTGRRTSMEALVRWTNGDGTPMPASAFLGIAE 431

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  I  ++LE   R+  +WR       + + +N++S+     +  E + A++  T 
Sbjct: 432 ETGLIVPIGRWVLEEACREAAAWRS-----DLRVAVNVSSRHARRADFAEEVLAVLRSTG 486

Query: 823 YSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             P R+++  +ES+  G + E +   L RLR +G+ + LDDFG+ CS L+ L   PFD +
Sbjct: 487 LPPHRLEIEIAESLFDGPDHELAVEALLRLRTMGVRIVLDDFGSGCSRLADLRRFPFDRI 546

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K  G+L+         +A++RS++ + + +   +  + +     ++ L   GC  +Q   
Sbjct: 547 KIAGNLVGEIGGDDGAVALVRSVLSLGQALGARVTVEGVETPEQVRRLMAEGCSEMQGYA 606

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
              P+  ++I  L     PL  + 
Sbjct: 607 FGRPMPADAIADLRTPPEPLRLSA 630


>gi|118590708|ref|ZP_01548109.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor [Stappia aggregata IAM 12614]
 gi|118436684|gb|EAV43324.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor [Stappia aggregata IAM 12614]
          Length = 1049

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 126/563 (22%), Positives = 241/563 (42%), Gaps = 26/563 (4%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIA-TILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             +  +  S + ++  D    ++      A T LG     +       +  ++  D +  R
Sbjct: 490  LAHILESSLNEIYILDASTFQIEHANRCALTNLGYTLEELKSQKIGDIDPVY--DPNTVR 547

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ--- 522
              +   +   R  L  E   R  D   + + +R++ + + + D+L  + IAND++E+   
Sbjct: 548  RHVAPLLKGHRDSLSAESVHRRKDGSEYPVDLRVQILRDQDRDLL--VAIANDVSERVQR 605

Query: 523  ----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
                +++       A+ D LT + NR                       ++ +D+D +K+
Sbjct: 606  ENETREAKIRAERLAYFDPLTKLSNRAGCQRDAKERFARREK----PAFLIHVDMDGFKR 661

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND LG   GD  L    RR+ E+ +      R  G+ F I+     +     +     R
Sbjct: 662  VNDTLGHLAGDQCLEETGRRLREVCRGLGTAYRWGGDEFVILAEGGTS--DPNELCERAR 719

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + + MP+         T S+G A           +L NA+LA+Y +K  G +    FR  
Sbjct: 720  RIMRMPMEFNGNRFWPTVSMGLALCPDDGDDFDTLLVNADLALYQSKENGKDRYTFFRPD 779

Query: 699  SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                      I+ +L  AV+N + +L++ P + L  + + G+EAL++W HP+ G +S +E
Sbjct: 780  MRTDSETEAQIELELKDAVKNDQFFLMFQPQVNLRSQAVTGIEALVRWQHPERGTVSPAE 839

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ + E+  +   +   ++++      SW DQ       I +N++   L    L +  +A
Sbjct: 840  FLPVVEKSGLAPILGEIVIDKAFAAARSWIDQGIDFG-RISVNVSPSHLSSGLLLDHFKA 898

Query: 817  LISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + K    P RI     ESV +  N       L  L ++G+ + LDDFGT  + LS++  
Sbjct: 899  AMEKHDIGPERITAEVLESVFLNDNRSGHLAALRELFELGVHIELDDFGTGYASLSHVSD 958

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P + +K + S         K+  I+  +I +A+++   ++ + +  +     L  MG D
Sbjct: 959  LPINGLKIDRSFTRQMLQDAKKEVIVNQLIHLARSLNIGVVCEGVETDAQYDRLRMMG-D 1017

Query: 934  Y-IQDSHVASPLGFNSILKLLKE 955
            + IQ   +A P+ F+     + E
Sbjct: 1018 FSIQGYLIARPMPFHQATDWMSE 1040



 Score = 79.2 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 7/193 (3%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT-GYFSQGIFS 402
           W       + L   +   L    +   L+  L   V L    +   VL            
Sbjct: 305 WAFAKGTLLSLMAGVGLALLAWTVVFRLLSRLQSSVQLTRARLEAEVLENTRKLESSTMQ 364

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDR 461
             E Q +A +GS    W+ DI  + +  + +   ++ +  G     ++ +L   I  ++R
Sbjct: 365 LIEAQRIAHVGS----WERDISSNEIIGSEEYYRVMKIPPGLPANEVQGFLFSRIPGDER 420

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 +++ V    G    E  +   D    ++ +R   ++  +G   + IG  +DIT+
Sbjct: 421 KKTLAAVNAAVKT-CGEFDIEHPMVHDDGSIQYLHVRGYVLAGPDGRAAKLIGTIHDITD 479

Query: 522 QKKSLEGILCNAF 534
           +  +       A 
Sbjct: 480 RCLAERRNHLLAH 492


>gi|220933986|ref|YP_002512885.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995296|gb|ACL71898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 803

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 128/588 (21%), Positives = 251/588 (42%), Gaps = 32/588 (5%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +V  V      + +        +     +  R    +      V             P  
Sbjct: 224 MVSSVRTREVELTEAHRQAERLTGLARQEQGRLRSLLSAMNIGVLFETHDHRVEYYNPAF 283

Query: 435 ATILGLASGS-MHGPI-RNWLPYI-HINDRD-----NFRTILDSFVGYRRGRLQYEFRVR 486
             I G+   + + G   ++ L    H   R      +   +LD+       R + E    
Sbjct: 284 QNIWGIPRDTNLTGMPTQDVLELAAHFESRPDHSSRHILQVLDTH--ESSERFETEL--- 338

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D +   +     P+ +++G+ L  + I  D+T ++++ E +L  A  D LTG+ NR  
Sbjct: 339 -NDGRL--ITQISYPVLDNDGNSLGRLWIYEDVTHERQTAEQLLYLAEHDALTGLCNRHC 395

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F  RL   +  +    + R  ++  D+D++K IND  G   GD VLV +   +  +++  
Sbjct: 396 FEQRLEKAMASAQRHHH-RLALLYFDLDEFKAINDSFGHRAGDAVLVRVASELAPVVRGG 454

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTS 665
           D+LAR+ G+ F  +L   ++  +    A  +  ++A  P       +  TAS+G A +  
Sbjct: 455 DMLARVGGDEFA-LLTQIDSIEEARSLAARLCGTVAKIPFRFRGTGVRSTASVGIAVYPE 513

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD----RVMIKEDLCLAVENSELY 721
              T+ +++  A++AMY AK  G N    +     RS+    R+   + + +A+E   L 
Sbjct: 514 HGETTEDLVARADIAMYQAKGLGKNTWSVYDPERDRSEAVAERLSWGDRIRMALEQDLLL 573

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKW--GNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L Y  +      E+V +EAL +   P+     +   +F+ IAE+  +I A++  +LE   
Sbjct: 574 LHYQGVYDAASGELVHMEALARIRDPRDLERILMPGQFVPIAEKTGLILALDRRVLELGI 633

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             +    D        + +NI+ +   D  L + ++ LI++    PSR+ +  +E+  + 
Sbjct: 634 AQLADNPDMPP-----LAVNISGRSFDDPALADAIRELIARHRVDPSRLIIELTETAAVS 688

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
             + ++  +  + ++G  + LDDFG   S  +YL YI  D +K +G  +       +   
Sbjct: 689 EIQEAQRFIESMHRLGCKVCLDDFGAGFSSFAYLKYIDVDMLKIDGMFVRDLTRDRENQV 748

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +R+++ +AK +    +A+ +     ++ L  +G D  Q  H+  P  
Sbjct: 749 FVRAMVDVAKGLGKRTVAEFVEDAATLEMLNTLGVDMAQGYHLHRPGP 796


>gi|222081301|ref|YP_002540664.1| kinase protein [Agrobacterium radiobacter K84]
 gi|221725980|gb|ACM29069.1| kinase protein [Agrobacterium radiobacter K84]
          Length = 567

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 204/437 (46%), Gaps = 13/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +L  A  D LTG+PNR+ F   L  +L    T D     +M ID+D +K +ND +
Sbjct: 124 QERARLLHQATHDVLTGLPNRRQFSQELDRLL---PTGDEAGLALMQIDLDDFKPVNDTM 180

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL     RI   L   ++  RL+G+ F II ++    ++    A A+      
Sbjct: 181 GHGAGDIVLRLAAERISRTLAHDEVAYRLAGDEFAIIQVAAQQPMEAERLAEALVAEFKK 240

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +    + V ASIG A          +++K A++A+Y AK  G     +F        
Sbjct: 241 PFVVDGISLFVGASIGVAIAPRDGNEGEQLMKAADVALYAAKKDGRRRARTFDPGMLVVL 300

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++  L +A++  E +L Y P++      +VG EAL++W HP  G I    F+ +A
Sbjct: 301 EQRELLRRSLRVALQRDEFFLEYQPLVEP-PFTVVGFEALLRWRHPSLGIIPPIAFIPMA 359

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   ++  I  ++LE+  R+ ++W          + +N++  + L     + +   +   
Sbjct: 360 EADGLMSEIGEWILEQACREALTWP-----VHYTVAVNLSPAEFLTPGFTDRVAQTLDVV 414

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +   R++L  +ESV++     +   L  L  +GI ++LDDFGT+ S LSYL   PFD +
Sbjct: 415 GFPSERLELEITESVLLERTINNLDTLNTLNVLGIQISLDDFGTEYSSLSYLKNFPFDNI 474

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +       K   I+RS+I +A  ++  + A+ +        L   GCD +Q   
Sbjct: 475 KIDKYFIKDLLRDGKSQTIVRSVIALAHGLDMRVTAEGVETAQQATWLQSEGCDRLQGYF 534

Query: 940 VASPLGFNSILKLLKER 956
           ++ P+G + +   + +R
Sbjct: 535 LSPPMGADRLADFIAQR 551


>gi|260222581|emb|CBA32284.1| Uncharacterized signaling protein CC_0091 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 559

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 204/436 (46%), Gaps = 7/436 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E ++S   +   +  D LT +PNR      +   +  + T  +    +M +D+D +K 
Sbjct: 123 IDEYRQSQAHLTYLSQHDALTELPNRSLGRQLMEAAIVRAQTSGS-HVALMFVDLDNFKF 181

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G A GD+ L  +  R+   ++  D++ R SG+ F + L+   +    +  A  + 
Sbjct: 182 INDSVGHAAGDEFLQQIASRLRSAVRETDVVMRQSGDEFLVGLLDVPDIQAASKAANEVL 241

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +     +   E++ + SIG A +         +L++A+LAMY AK  G N    F V 
Sbjct: 242 EHLGGVYRVQGSELSSSCSIGLAVYPRDGHDFDTLLRHADLAMYQAKQAGRNTFRFFDVM 301

Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     +  +L  A+   E  L Y P++ + D  ++G EALI+W HP  G +   E
Sbjct: 302 MQDDLSANPRLVAELQTALVRGEFVLHYQPVVDMQDHRLLGAEALIRWQHPVRGLLGPVE 361

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE   +I  I  ++LE   R  + W+      P+ + +NI+   L   +L   ++ 
Sbjct: 362 FIPAAERSGLIVDIGHWVLEEACRQAVKWQR--PGQPLVVAVNISPVQLHRGDLESAVRM 419

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +    + ++L  +ESV+MG+       +  L+ +G+S+ +DDFGT  S L YL   
Sbjct: 420 ALANSDLPGACLELEITESVLMGDATTLADTIRHLKALGVSIAVDDFGTGYSNLGYLQRF 479

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +       ++ AI+ +II M K+++    A+ +  +     L  MGC  
Sbjct: 480 AADKIKIDQSFVRAMLAEPEQQAIVTAIIQMGKSLKLLPHAEGVESDDARALLLEMGCRT 539

Query: 935 IQDSHVASPLGFNSIL 950
            Q    A PL  +   
Sbjct: 540 GQGYWFARPLAADMFA 555


>gi|294676200|ref|YP_003576815.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294475020|gb|ADE84408.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 936

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 134/584 (22%), Positives = 246/584 (42%), Gaps = 27/584 (4%)

Query: 390 VLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             A     +    + ER +      S D +   D     + T P    + G+A G+    
Sbjct: 337 TRARDVTEELRTREVERLADRVFEQSSDAIVITDPGLRVMRTNPAFERMSGIAPGATPAL 396

Query: 449 IRNWLPYIHINDRDNFRTI--------LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           + +    +       +           L   +    G  Q E  +   D++      RI 
Sbjct: 397 LLD--ALVTPRSGTRWIMAGMSETDSWLRQVLARAEGSWQGEVTLHGKDDRQLTCWARIT 454

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            ++++ G  L ++ +  D+T  +++       A  D LTG+ NR+   +R+   +  ++ 
Sbjct: 455 RLTDAAGVNLGHVAMLADLTLLRQTQADNQRMAQFDQLTGLANRRLLAERIDDWIGFASR 514

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  +M +D++K+K +ND LG   GD +L  +  R+   L   ++ AR+ G+ F ++
Sbjct: 515 AGQ-SFALMYLDLNKFKSVNDSLGHETGDLLLTVIADRLRAALTEGELAARIGGDEFVVL 573

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAEL 679
           +    +       A  +   +A P++L        +A+ G A +     +   +L+N++L
Sbjct: 574 I-GNADEAAALRRAAELLDHLARPLDLPGLHNYRPSAAAGIACYGRHGDSRDALLRNSDL 632

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK      V  +  S        ++    L  A+EN E  L + PI  L D+   G
Sbjct: 633 AMYAAKSD-RRAVMIYEPSMGAEALRELETRVALVSALENDEFELHFQPIFALDDKRPRG 691

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFI 796
            EAL++W+ P  G +    F+ +A +  ++ AI+  +L R       WR          +
Sbjct: 692 CEALVRWNRPGHGLVMPGAFLPVAAKAGLMPAIDRMVLRRAVAVQARWRWAGLVHADWTL 751

Query: 797 LINIASKDLLDNELCEGMQALISKTLY-------SPSRIKLSFSESVVMGNPERSRLLLG 849
            IN  +  L   +  E + A + +  +        P  +++  +E  +  +   +   L 
Sbjct: 752 SINQTASSLAAQDWAEVLDAALVRVGWKTSDDVAPPFGLQIELTEDQLAVDIPGAMEALQ 811

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           RLRK+GI+L +DDFGT  S L+YL  +P  T+K + S + G         I+ +II +AK
Sbjct: 812 RLRKMGIALAIDDFGTGYSSLTYLRRMPVTTLKIDASFVRGIEADGDARQIVEAIIGLAK 871

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 +A+ I  E  ++ L  +GCDY Q      PL  ++   
Sbjct: 872 KFGFVALAEGIESEAALQTLIELGCDYGQGYLFERPLPQSAFEA 915



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E   L +  + D V   D     V      A   G     + G  R+             
Sbjct: 222 ELLRLLIESTIDPVALTDTEGRVVIANKAYAQPFGRIPAEIEGRRRSQFM---DEQLARH 278

Query: 465 RTILDSFVGYRRGRLQYEFRVRAA----DN-----QFHWMIIRIRPMSNSNGDILRYIGI 515
              L++ V  RR  L  E  V       D      +   ++   RP+ + +G ++     
Sbjct: 279 LNGLEAGVIARRTALIVEESVLRPTRPHDGPPGTPRPAHLLTERRPVFDDDGAVIGVFTR 338

Query: 516 ANDITEQKKSLE 527
           A D+TE+ ++ E
Sbjct: 339 ARDVTEELRTRE 350


>gi|319787697|ref|YP_004147172.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudoxanthomonas suwonensis 11-1]
 gi|317466209|gb|ADV27941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudoxanthomonas suwonensis 11-1]
          Length = 859

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 210/440 (47%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++++ + I   AF D LTG+PNR     +   +L+ +      R  V+ +D+D++K +N
Sbjct: 419 EREEARQRIQQLAFYDALTGLPNRSLLETQAAQLLESAQEIGQ-RVAVLYLDLDRFKHVN 477

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD +L  +  RI  LL+   +  RL G+ F + +    +  +I       +  
Sbjct: 478 DSLGHAAGDALLREVAARIRGLLRQDGVAGRLPGDEFIVAVP-LRSGEEINSLIERWQTR 536

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +  P+ L   ++ ++ S+G A +         +L  AE+ ++ AK  G   V  F V   
Sbjct: 537 LMRPLQLSSTKVDLSVSMGVAMYPEDGAAMGTLLHRAEMGVHQAKAGGPGRVGFFSVELS 596

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++  L  A++   L L Y P + L    + G+EAL +W+HP+ G+I  S F+
Sbjct: 597 RAAGERLALETALREALQGGGLQLHYQPQVALATGRLYGVEALARWEHPELGSIPPSRFI 656

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  ++ A+  + L+   R +  WR +  + P  + +N+++ +  + EL   +   +
Sbjct: 657 PLAEECGLMGALGRWALDESCRQLAQWRREGLVVP-NMAVNLSASNFHNLELPAIVAQTL 715

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  S + L  +ES+++ +       + RL   G+ L++DDFGT  S LSYL  +P 
Sbjct: 716 ETHGLQGSDLLLELTESILLDSHGAVMQTIERLHAQGVGLSMDDFGTGYSSLSYLRRLPI 775

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +          A+  +I+ +  ++  T++A+ +  E   + L   G   +Q
Sbjct: 776 TELKLDRSFVADLENATTARALSAAILGIGTSLGLTVVAEGVETEAQREILKAQGYPVVQ 835

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+    +   +  +
Sbjct: 836 GYWFARPMPPQELPGWMAGQ 855



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 6/158 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V+     V   V  +            R SL    +   +   D     V +      + 
Sbjct: 116 VVTHIMVVATDVTQSKRTELARQDHLWRLSLVADTTDAAIVITDANSRVVYSNGGFFRMF 175

Query: 439 GLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G   G M G  +   L        + F  +       R   ++    V     + +W  I
Sbjct: 176 GWTLGEMQGRKVLELLAQQAP--LELFERVRGDLRQGRPAGMEEV--VTGKGGRRYWSKI 231

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              P+ ++ G+    + +  DIT+ K   E +   A Q
Sbjct: 232 LCNPVMDAEGNWAYTVSVLLDITKTK-IHEVLHHRALQ 268



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 25/155 (16%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           ++   S+       R S A   +   + ++ +    V+      ++L LA   M      
Sbjct: 4   SSVSRSEAASQLENRWS-AFDKA-MALAEFALDGQLVSANAKFQSLLRLAPAQMTA---- 57

Query: 452 WLPYIHINDR--------DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
               +H +            +R + +S                 +D    W+     P+ 
Sbjct: 58  ----LHHDQLCPPGLVQGQAYRNMWESLCAG--HEFSGVVERVCSDGGVCWLEALYAPVH 111

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           + +G +   + +A D+T+ K++       A QD+L
Sbjct: 112 DRDGVVTHIMVVATDVTQSKRTE-----LARQDHL 141


>gi|217968638|ref|YP_002353872.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
 gi|217505965|gb|ACK52976.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
          Length = 737

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/462 (26%), Positives = 227/462 (49%), Gaps = 7/462 (1%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            R +++      R   +  ++  + ++   I+  A +D LTG+PNR + +DRL   +  +
Sbjct: 267 ARSVTDELELRQRVGELEEEVARRHEAEARIMQLATRDALTGLPNRAALMDRLHQGVRAA 326

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               NL   V+ +D+D++K IND LG  +GD +L  +  R+   ++  D +ARL G+ F 
Sbjct: 327 QRSGNL-LAVLFLDLDRFKWINDTLGHDLGDALLQEMALRLSRAVRECDTVARLGGDEFA 385

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L            A  +   I  P+ +    + V  S+G A +         +L++A+
Sbjct: 386 IVLGDLWQVADAEAVAAKIVDVITRPLEVRGHALRVGGSVGVAVYPFQAHDEESLLRHAD 445

Query: 679 LAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAMYHAK  GGN  + F  ++++   +R+ ++ +L  A+   +L L Y P + L D  + 
Sbjct: 446 LAMYHAKESGGNRHQLFSEQMNARAVERMTVESELRAAIAAGQLELHYQPQLCLEDGRLA 505

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL++W HP+ G ++   F+ +AE+  +I  + L +LE     + +W       P  I
Sbjct: 506 GMEALVRWRHPRLGLLAPGRFVPLAEDCGLIWELGLAVLELALAQLAAWDRAGLEVP-RI 564

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L   EL E +  ++ +   +  R+++  +ES +  +   +  LL  LR++G 
Sbjct: 565 AVNVSPAQL-RPELVERIVEILDRHGVAARRLEIELTESALTADGPAANGLLQALRRMGA 623

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTII 914
           S+ +DDFG   S L+ L  +P   +K + S +      R   AI+ +I+ MA ++    +
Sbjct: 624 SIAIDDFGVGYSSLTLLRRLPISALKIDRSFVAELATNRQDAAIVEAILRMAHSVGLRTV 683

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +        L  +GC  +Q    A PL   +    L  +
Sbjct: 684 AEGVEHAEQQAALGELGCQEVQGYLCARPLEAKAASAWLAGQ 725


>gi|302189752|ref|ZP_07266425.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 683

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 212/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  V+ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQIGLDRILEDAGRQQH-RVAVLCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 298 QFSYQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFVVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+   +LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRDQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|187926418|ref|YP_001892763.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|241665905|ref|YP_002984264.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D]
 gi|187728172|gb|ACD29336.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|240867932|gb|ACS65592.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D]
          Length = 695

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 204/425 (48%), Gaps = 7/425 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR    + L   +  S         +  +D+D + +IND  G   GD VL 
Sbjct: 268 LHDALTGLPNRLHLREALEAAILSSTRRGRP-FALFYLDLDNFGQINDQYGRNAGDRVLQ 326

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+ + ++  D +ARL G+ FGI++         A     +   +   + +  R + 
Sbjct: 327 IIAERLRQAIRGEDTVARLGGDEFGILVEGLALPESAATIGDKLLFRLRESVEVEGRRLR 386

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDL 711
            TASIG      +  T+  +L++A+ AM+  K   GN    F    ++     + I+  L
Sbjct: 387 ATASIGVVVHPHNGATADTLLEHADTAMFDCKQSTGNAYRFFEPRLNTTAHRVLQIQRAL 446

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A  N +L + Y P      + + G EAL++W+HP+ G +S +EF+ +AE    I  + 
Sbjct: 447 SHAALNGQLSVYYQPKYDARTQAMAGAEALLRWNHPELGPVSPAEFIPLAERTGTIVELG 506

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++E + R I+ W D   M P  I +N++ +     +L + +  ++ +   +  R+   
Sbjct: 507 DWVVEEVCRQIMHW-DAIGMAPQRIAVNLSPRQFQQPDLVQRLSQILHRYQVAAHRLMFE 565

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  M +  +S  ++ +++ +G  + +DDFGT  S LSYL       +K + + ++  
Sbjct: 566 ITETAAMRDASQSIAVIRQIQSLGFEVAIDDFGTGYSSLSYLQRFRAQQIKIDRAFVSAL 625

Query: 892 T---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +  AI+R+I  MA +++ T++A+ +  E  ++ L  + CD +Q   +A P+    
Sbjct: 626 DDNPPEAAAIIRAICAMAHSLDMTVVAEGVETEAQMQALVNLQCDQVQGYLLARPMPAKD 685

Query: 949 ILKLL 953
              LL
Sbjct: 686 FQGLL 690


>gi|257486683|ref|ZP_05640724.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331010155|gb|EGH90211.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 763

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/709 (22%), Positives = 304/709 (42%), Gaps = 31/709 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
           +        G    +  A + I   +     + +  + +   A  +    + + +  M  
Sbjct: 25  NLFLVALAYGVACAASFATLDIADRVIQVDAIKSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 334 YERA--VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           +E    +       L  +  + +   +  R             +  +V+  G +V+ ++ 
Sbjct: 85  FEAPLKISYDLTVTLASLLIVLITALVAMRALTIPELTLRRCLISSLVMGTGISVMHYLG 144

Query: 392 ATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +   S        R   A+         +    + R           +       + G 
Sbjct: 145 MSAMRSAATQYYEPRM-FALSIVVAVLSSIALLTLSRHLRQYNGMFHQMFRYGVSLLLG- 202

Query: 449 IRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP----- 501
               L  +H+      R ++   + +         +  +  A      +   I       
Sbjct: 203 --AGLLTMHLMGMRALRLVMPEGAALHIPGTENSQQLGLTIAAITLLIIAGSISAAMADK 260

Query: 502 -MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L    T
Sbjct: 261 KLQGKEHDLQRVNALLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HT 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    VM +DID +K+IND LG   GD++L  +  RI    +  D+++R  G+ F  I
Sbjct: 317 YNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRVQDVVSRFGGDEF-CI 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA
Sbjct: 376 LLSIPDYEEARHLAYRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLA 435

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVG 737
           +Y +K  G N V  F     +  S  + ++E+L  A  E + L + Y PI+ +    +  
Sbjct: 436 LYQSKGNGRNRVNFFSPALKTRASLELHLEEELRNALREETGLQVYYQPIVDMHTGHVAK 495

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LEAL++W+HP+ G ++   F+ IAE   +I  ++ ++L R   D+ + R +     + I 
Sbjct: 496 LEALVRWNHPQHGLLAPGRFIGIAEANGLIAELDNWVLRRACHDLRTLRQEGLEQ-LIIT 554

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N ++  L  +EL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+S
Sbjct: 555 VNCSALTLGRDELVEEVEQALADADVAPGRLELEVTENALMGNISNTILMLKHIRSLGVS 614

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ 
Sbjct: 615 LSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLHLKVVT 674

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
           + +     ++ L+R G DY+Q    + P     IL L   + ER P  +
Sbjct: 675 EGVETPAQLEFLSRFGSDYVQGYLFSKPQPLERILPLARQMNEREPTTR 723


>gi|221639764|ref|YP_002526026.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           KD131]
 gi|221160545|gb|ACM01525.1| Diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           KD131]
          Length = 789

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/633 (22%), Positives = 268/633 (42%), Gaps = 28/633 (4%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + A  ++    +   + +  R  +  ++P  +  L  +   +     +            
Sbjct: 135 LVAVPMLRHGVLAGRVLLGWRTASSDLRPEDLAALQSLAEAMHAAAERRESERLTTEAAA 194

Query: 401 FSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYI 456
               +R  L   +  S   +  +D     V    + A +LG  +  + G     +    +
Sbjct: 195 ALQEDRLLLESILRTSTSAILAFDADARIVFANDEAAALLGADASRLPGCTLEGVGCRLL 254

Query: 457 HINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                      L     +   +        + AAD +   + I   P++      +R + 
Sbjct: 255 SREGEPLPPEALPVARAIAEGQTLRDLHHVLMAADGRQRILSINAAPVAAGAATAVRVVA 314

Query: 515 IANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +D+T         + +L      AF D LTG+ NR+  ++ L   L   A  +    +
Sbjct: 315 TIDDVTGQVSADSALRTALAEAHQLAFFDPLTGLYNRRGIVEVLRDCLQTCAR-EKAFLS 373

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D  +++N   G  +GD VL +L  R+  L +    L R+S + F  +   E + 
Sbjct: 374 LLYIDLDGMRQVNGTRGHWLGDRVLQALGARLDNLRQDGGDLGRISADEFV-LTCGETHP 432

Query: 628 LKIADFAI------AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 A        + +S+  P  +    + VTASIG A+ ++ + +   +LK  +LA+
Sbjct: 433 DAAGAVAAAEAEAERILESLREPFVVDGLTLEVTASIGLAAISA-EDSVEGLLKGVDLAV 491

Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVG 737
             AK  GG+   ++R    +    RV + ++L  A+   E  + + P++       EIVG
Sbjct: 492 MAAKAAGGDRACAYRADMEQDMVGRVALAQELREAIRRDEFRIYFEPMVSLGETGLEIVG 551

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+HP+ G ++   F+  AEE   I+ I+ ++L   A+++  W +      + + 
Sbjct: 552 QEALIRWEHPQRGLLAPIAFIPFAEETGFIRDIDRWVLRAAAQELARWAEDPARRHLGVS 611

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+S   L  E  + ++ ++ +T   P+RI+L  +E  ++ N   +R  +  LR +GIS
Sbjct: 612 INISSAQFLSEEFGQMVREVLDETGVDPTRIELEVTEGTLLSNLGLARTTMMDLRSLGIS 671

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL  +P D +K + S + G ++      IL  II +A  +   ++A
Sbjct: 672 IALDDFGTGFSSLSYLRDLPVDVLKIDRSFLGGLSDSKANRTILEGIIGLASGLGVALVA 731

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + +        L   GC   Q      P     
Sbjct: 732 EGVETPAQFAWLRAKGCRTFQGYLFGRPADEAQ 764


>gi|291437097|ref|ZP_06576487.1| phosphodiesterase [Streptomyces ghanaensis ATCC 14672]
 gi|291339992|gb|EFE66948.1| phosphodiesterase [Streptomyces ghanaensis ATCC 14672]
          Length = 763

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 219/426 (51%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ   +R+ T LD +   D  R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 318 LRDPLTGLPNRQWLQERIWTALDEAERMD-ARAALMLIDLDRFRSVNDTLGHLAGDRLLL 376

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A ++  +++ P++L    + 
Sbjct: 377 QIADRLRLALPRGAEAARLGGDEFAVLLPVADSTTSATRIARSLVGALSSPLDLDGLTLV 436

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ +++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 437 LEASAGVAVFPDHAVDAEGLLRRSDVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 496

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 497 RALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 555

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 556 YVLETALGQVAEWRAQGLFVP--VAVNVSPRDVHIPGFAGSVAARLARHGVPAGALQLEI 613

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 614 TEHVLLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 673

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +  +   
Sbjct: 674 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPDETT 733

Query: 951 KLLKER 956
             L  R
Sbjct: 734 AWLLAR 739


>gi|239982060|ref|ZP_04704584.1| hypothetical protein SalbJ_21689 [Streptomyces albus J1074]
          Length = 591

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/585 (22%), Positives = 253/585 (43%), Gaps = 42/585 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
           ++ A   +   +   D     V      A +LG   G+               D      
Sbjct: 13  RADAFRRAPMALAVLDRAGRVVEANDAFAALLGTGPGAGALSRVAAELLGRPGD-----E 67

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +  RR  L+   RVR A+ +  W+++ + P   ++G     +    DI+ +++  
Sbjct: 68  TVRAVLEGRRAGLRRTRRVRDAEGRARWLLVAVEP-PRADG-PGGALLSVTDISARRELE 125

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRL--------------------TTILDLSATDDNLRP 566
             +      D +T +PNR  F +RL                          +      R 
Sbjct: 126 ARVRDLRMHDPVTRLPNRALFFERLASVAGPSGPEGAAEHGEHPEDRWPPEAGQARTGRI 185

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD------ILARLSGNRFGII 620
            V  +D+D +K +ND  G   GD +L ++  R+  +           ++ARL G+ F ++
Sbjct: 186 GVCYLDLDGFKAVNDTFGHRTGDLLLTAVAERLSRVAVAGARGGRTPLVARLGGDEFALL 245

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   + + ++   A A   ++  P +     ++V+AS+G     +S  T++E++++A+  
Sbjct: 246 VPDSSGTEQLTALAAAALVALEEPFDADGERLSVSASVGVVERPASATTATELMQDADTT 305

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  GG     F             +  +L  A+   E  L Y P++ L D    G+
Sbjct: 306 LYWAKADGGGRWTLFDPERNAHRMTRQVLAAELRPAIGRGEFVLDYQPLVDLADGTTSGV 365

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFIL 797
           EAL++W HP++G +  S F+  AEE   +  +  ++L        +W+  +     IF+ 
Sbjct: 366 EALVRWRHPQFGTLPPSRFIGQAEEDGSVVQLGRWVLRTACAQARAWQVARPGRRAIFVS 425

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+A + + D++L   + A +  T   P  ++L  +ES +MG+  R   +L  L  +G+ 
Sbjct: 426 VNVAVRQVWDSDLVADVAAALEATGLPPELLQLELTESALMGSAGRPLRVLQALSAMGVR 485

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK------RIAILRSIIPMAKNIET 911
           + +DDFGT  S LSYL  +P   +K +GS +    +          ++ +++ +A  +  
Sbjct: 486 IAIDDFGTGYSNLSYLSRLPVSVLKLDGSFVRSFRDDVPPGAADEVVVEAMVSLAHRLGL 545

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           T+ A+ +      + L  +GCD  Q    + P+G   I  LL+++
Sbjct: 546 TVTAECVETAQQARRLRGIGCDTGQGWLWSRPVGPERIAGLLRQQ 590


>gi|302337964|ref|YP_003803170.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635149|gb|ADK80576.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta smaragdinae DSM 11293]
          Length = 694

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/577 (20%), Positives = 225/577 (38%), Gaps = 18/577 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +T I   L      Q +       S  +    D +             P    I G    
Sbjct: 113 YTTIDIALYKFNVDQALKRQEHWLSAILHSIEDGIIATGKDGKIQFMNPVAENITGWKEN 172

Query: 444 SMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIR 500
                    +  ++   +  +   +  +           +    ++            + 
Sbjct: 173 EATERTLGMVFQLYYGPD--ETAVSFPNLLTDGEESPFVFKNCLLKNRAGATIHTEGSLA 230

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + +G +   +    D TE ++  E I   A  D LTG+ NR  F ++L   + L+  
Sbjct: 231 AIRDRDGKLDGQVLAFRDTTEMRRMSETISYQASHDTLTGLINRDEFSEQLRRTIGLAKE 290

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D      + +DID++K +ND+ G   GD++L+  T  I  +++  D+ ARL G+ FGI+
Sbjct: 291 SDGEN-AFIFLDIDQFKVVNDLCGHTAGDELLLKTTTVIKSVVRSSDLSARLGGDEFGIL 349

Query: 621 LISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           L    +  +  + A  ++  +    +   +    +T SIG      +     ++   A+ 
Sbjct: 350 LTG-ASISQATEIAQRLQSRLRETKLIWDKHVFNITTSIGIVMINGNDQDIHDVFAAADD 408

Query: 680 AMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPI--IRLMDE 733
           A Y AK  GGN ++ + V       R   +     L  A+E     L + PI  I   + 
Sbjct: 409 ACYIAKDAGGNKIKVYNVEENLFTKRRGEMQWISRLTKALEEDRFQLFFQPIEPINSSNS 468

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP- 792
            +   E LI+    +   I  ++F+  AE   ++ A++ ++++   +      D+     
Sbjct: 469 GMKKCELLIRMIDQEGNTIMPADFIPAAERYNLMPAVDRWVVQNAFKAYKLLSDELGQDR 528

Query: 793 -PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P F  IN++   L D    + +     +    PS      +E+  + N + +   +  L
Sbjct: 529 NPFFFTINLSGAFLADETSLDFLVYEFQEYGVPPSSFCFEVTETEAISNMKTASHFINEL 588

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
           +KIG +  LDDFG+  S  +YL  +P D +K +G  +          A++ +I  M K +
Sbjct: 589 KKIGSTFALDDFGSGFSSFNYLKLLPVDYLKIDGMFVKDMDTDPVNRAMVEAINSMGKVM 648

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               IA+ +  E  ++EL ++G DY Q      P   
Sbjct: 649 RIKTIAEFVGNEGILRELEQIGVDYAQGYFFGKPTPI 685


>gi|67920253|ref|ZP_00513773.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67857737|gb|EAM52976.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 611

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 223/444 (50%), Gaps = 9/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I ++K   + +  +A  DNLT +PNR   +  +   L  S TD + +  V+ IDID++
Sbjct: 155 TEIEQRKVIEQKLQHDALHDNLTKLPNRSFLMTEINESLQKSKTDQDYQFVVLFIDIDRF 214

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +LV +++RI + +     + RL+G+ F ++L + N+S K+      
Sbjct: 215 KVINDSLGHHAGDTILVEISQRICQTIDNLGRVFRLTGDEFVVLLKNINSSQKVLQITNK 274

Query: 637 MRKSIAMPINLLEREITVTASIGFAS----WTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           + + I +PI +   +   T SIG       +        E+L++A+ AMY AK +G N  
Sbjct: 275 IIEQIQLPIYINNLDFFTTVSIGIVFGRQPYCYDYEEGIEILRDADNAMYKAKEKGRNRY 334

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  +  +     ++I+ DL  A+   E  L Y PII L  +E++G EAL++W+HP+ G
Sbjct: 335 CVFDQTMHKEALKTLLIQTDLKKALIKEEFILYYQPIISLSTQELIGFEALVRWNHPQEG 394

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNE 809
            I   EF+ +AEE  +I  +  ++     R    W+ Q      + I IN++   + +  
Sbjct: 395 LIPPIEFISLAEETGLIIDLGNWVFFEACRQAQVWKKQYEKAASLKISINLSGHQINEVN 454

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +  + + T   P  I++  +E++++ N +    L  ++++  I + +DDFGT  S 
Sbjct: 455 LVENIDRICNLTQLDPKFIRMEITENILIKNHQIINDLFQQIKERKIQICIDDFGTGYSS 514

Query: 870 LSYLGYIPFDTVKFNGSLM-TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL     D +K + S +     E K I IL++II +A N    ++A+ I  E   K L
Sbjct: 515 LSYLHNFELDILKIDKSFIQRNLNELKTIKILKTIIDVAYNFGMDVVAEGIETEQQSKIL 574

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
             +GC   Q      PL      K
Sbjct: 575 QDLGCKLGQGYFFGHPLNAKIFEK 598


>gi|66047070|ref|YP_236911.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257777|gb|AAY38873.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 763

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 152/700 (21%), Positives = 301/700 (43%), Gaps = 28/700 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY---TYFIIYHG 330
           +        G    +  A + I   +     + +  + +   A  +       +FI    
Sbjct: 25  NLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
            +   +    +   ++  +  +   +   + L    +          +V+ +G +V+ ++
Sbjct: 85  FQAPLKIAYDLSITLISLLIVLITALVAMRALTVPELTLRRCLISA-VVMGVGISVMHYL 143

Query: 391 LATGYFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +   S        R  +L  ++     +    + R           +   A   + G 
Sbjct: 144 GMSAMRSTATQYYEPRMFALSILVAVLSSIALLTLPRHLRQYNGMFHQMFRYAVSLLLG- 202

Query: 449 IRNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRP----- 501
               L  +H+      R ++     +         +  +  A      +   I       
Sbjct: 203 --AGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLTIAAIALLIIAGSISAAMADK 260

Query: 502 -MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     D+ R   +   + + + SL+ +   A  D LT + NR+ F       L    T
Sbjct: 261 KLQGKEHDLQRVNALLTQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HT 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  I
Sbjct: 317 YNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEF-CI 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA
Sbjct: 376 LLSIPDYEEARHLAHRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLA 435

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVG 737
           +Y +K +G N V  F     +  S  + ++E+L  A+     L + Y PI+ +    +  
Sbjct: 436 LYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQVYYQPIVDMRTGHVAK 495

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LEAL++W+HP  G +  + F+ IAE   +I  ++ ++L R   D+ +   +     + I 
Sbjct: 496 LEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGLEQ-LIIS 554

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N ++  L  NEL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+S
Sbjct: 555 VNCSALTLGRNELVEEVERALADADAAPGRLELEVTENALMGNISNTILMLKHIRSLGVS 614

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ 
Sbjct: 615 LSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVT 674

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  +  ++ L + G DY+Q    + P     IL L ++
Sbjct: 675 EGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQ 714


>gi|328885212|emb|CCA58451.1| putative phosphodiesterase [Streptomyces venezuelae ATCC 10712]
          Length = 704

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 217/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T L+ +   +  R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 257 LRDPLTGLPNRQWLLERAWTALEEA-EGEGARAALVLIDLDRFRSVNDTLGHLAGDRLLL 315

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L + +++      A  +   ++ P++L    + 
Sbjct: 316 QIAERLRLALPRGAEAARLGGDEFAVLLPTADSTTSAQRVARHLVAELSSPLDLDGLTLV 375

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 376 LEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 435

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P ++  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 436 RALDAGEVELHYQPKVQF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 494

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 495 YVLETALAQVARWRAQGLNVP--VAVNVSPRDVHTPGFAGAVAARLARHGVPAGALQLEI 552

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 553 TEHVLLEDPQRAADTLNGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 612

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 613 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPGEAT 672

Query: 951 KLLKER 956
             L  R
Sbjct: 673 AWLLAR 678


>gi|313682415|ref|YP_004060153.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155275|gb|ADR33953.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 826

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 214/436 (49%), Gaps = 7/436 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   +  D LT +PNR+ F   L   ++ +   +  R  V+ +D+D++K++ND  G 
Sbjct: 393 QKQLKYLSDTDPLTDLPNRRLFYVLLENCIEKAKHLNR-RFGVIFLDLDQFKQVNDTFGH 451

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L  +  R+ + L+  +ILAR+ G+ F I++   +   +I      +  S  +P 
Sbjct: 452 EIGDILLQEVALRLRQTLRDSEILARIGGDEFNILIEGFDGYEEIESIVKGILNSFDLPF 511

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-- 703
              + EI  TASIG A +     +   ++KNA++AMY +K +G N    F          
Sbjct: 512 LCQDHEIRTTASIGIAIYPEDGQSIHNLIKNADMAMYRSKDKGRNGYSFFTNDLAVDIEE 571

Query: 704 -RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +MI        +  E +L+Y P    +  +I  +EAL++W+  + G I+   F+ +AE
Sbjct: 572 KTMMIHALKASIDKKDEFFLLYQPKTSTLTGKITAVEALLRWNSSEVGKITPDTFIPLAE 631

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  MI  +  ++L +   D +  R++  +    I +N++S  L  ++  + +  ++ +T 
Sbjct: 632 ETGMILTLGAWVLNQACSDFMLLRNEGYLLE-HIGVNVSSLQLQRDDFIKTLNDVLDQTK 690

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  +++  +ES +  + + +  +L  LR + I++ +DDFGT  S ++YL  +    +K
Sbjct: 691 IDPKWLEIELTESYLATDADHALSILRTLRDLNINIAIDDFGTGYSSMAYLQKLSVTRLK 750

Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +     + + IAI R+II +A     +I A+ +     +  L   GC  IQ  + 
Sbjct: 751 IDKSFIDDLPLSSESIAITRAIIALANTFGLSITAEGVENHDQLCFLQDEGCHEIQGYYY 810

Query: 941 ASPLGFNSILKLLKER 956
           + PL  N +   +  +
Sbjct: 811 SKPLTLNELKDYITNQ 826


>gi|126442988|ref|YP_001062179.1| GGDEF domain/EAL domain-containing protein [Burkholderia
           pseudomallei 668]
 gi|126222479|gb|ABN85984.1| ggdef domain/eal domain protein [Burkholderia pseudomallei 668]
          Length = 688

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 202/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR++  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|89055410|ref|YP_510861.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88864959|gb|ABD55836.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 664

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/551 (23%), Positives = 247/551 (44%), Gaps = 22/551 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R + A+L +  ++  +      +   P    ++G        P+R+ L  +   D D   
Sbjct: 130 RSAEALLHTDVMITLFREDGVPLYMNPAARNMVG----EASAPLRDLL--VTRTDYDTMV 183

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           + L      + G  +    ++       W  I  +   ++       +  A D++E K++
Sbjct: 184 SGLA-----KGGEHRQVAEIQTKTGT-RWFDISAKRCRDAATGDPAVLVTAIDVSELKRA 237

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A +D LTG  NR      LT  +   A     + T++  DID++K+IND  G 
Sbjct: 238 RDQARYLARRDQLTGCYNRS----HLTRFVAELADAQATQVTLLYFDIDRFKQINDTYGH 293

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD VL+++  R  +L +  D + RL G+ F ++L + + + ++        K+++ P 
Sbjct: 294 VIGDRVLMAMADRAIQLTQDTDAVVRLGGDEFVVVLGATDAASRLERV-ERFFKALSAPT 352

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
           +     +    S+G + +  ++      L++A++A+Y AK+ G N    +          
Sbjct: 353 DFASITVNSRVSLGVSVFDPTQTDVDVALRHADIALYLAKNTGRNRYVVYDDQMGEEADK 412

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R   + ++  A+   +  L Y P + L    IV +E L +W HP  G +   EF+ I EE
Sbjct: 413 RSRTEAEIESALNAQQFELYYQPRVDLASGRIVAVEGLARWRHPDRGFVPPDEFIPICEE 472

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   +LE      I+W +      + + +NI+ +   D +L + ++A   +  +
Sbjct: 473 TGLIHLLGRRVLEMGFAQAIAWSEAGLD--VQLSLNISPRQFSDPQLLDNLKAYADRPDF 530

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              +I+L  +ESV++G+ +     L  +  +G  +++DDFGT  S LSY+   P   +K 
Sbjct: 531 PTHKIELEITESVLIGDQDGIAAKLHAITAMGYQISIDDFGTGYSNLSYISRFPLHCLKI 590

Query: 884 NGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + S +         I+R I+ +A+ +  T +A+ +  +     LT  GC  IQ   VA P
Sbjct: 591 DRSFIEQL-PASGPIVRLILALAQELGVTSVAEGVETQAQFDWLTSHGCTQIQGYFVAHP 649

Query: 944 LGFNSILKLLK 954
              + +  LL+
Sbjct: 650 APADDVALLLR 660


>gi|330971017|gb|EGH71083.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 763

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 152/700 (21%), Positives = 301/700 (43%), Gaps = 28/700 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY---TYFIIYHG 330
           +        G    +  A + I   +     + +  + +   A  +       +FI    
Sbjct: 25  NLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
            +   +    +   ++  +  +   +   + L    +          +V+ +G +V+ ++
Sbjct: 85  FQAPLKIAYDLSITLISLLIVLITALVAMRALTVPELTLRRCLISA-VVMGVGISVMHYL 143

Query: 391 LATGYFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +   S        R  +L  ++     +    + R           +   A   + G 
Sbjct: 144 GMSAMRSTATQYYEPRMFALSILVAVLSSIALLTLPRHLRQYNGMFHQMFRYAVSLLLG- 202

Query: 449 IRNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRP----- 501
               L  +H+      R ++     +         +  +  A      +   I       
Sbjct: 203 --AGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLTIAAIALLIIAGSISAAMADK 260

Query: 502 -MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +     D+ R   +   + + + SL+ +   A  D LT + NR+ F       L    T
Sbjct: 261 KLQGKEHDLQRVNALLTQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQE-HT 316

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +N    VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  I
Sbjct: 317 YNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEF-CI 375

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+S  +  +    A  + + +   I L  R + +T SIG A +     T  E+LK+A+LA
Sbjct: 376 LLSIPDYEEARHLAHRVMQKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLA 435

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVG 737
           +Y +K +G N V  F     +  S  + ++E+L  A+     L + Y PI+ +    +  
Sbjct: 436 LYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQVYYQPIVDMRTGHVAK 495

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LEAL++W+HP  G +  + F+ IAE   +I  ++ ++L R   D+ +   +     + I 
Sbjct: 496 LEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGLEQ-LIIS 554

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N ++  L  NEL E ++  ++    +P R++L  +E+ +MGN   + L+L  +R +G+S
Sbjct: 555 VNCSALTLGRNELVEEVERALADADAAPGRLELEVTENALMGNISNTILMLKHIRSLGVS 614

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S L+YL  +P DT+K + S +     + + + I+++I+ MA  +   ++ 
Sbjct: 615 LSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVT 674

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  +  ++ L + G DY+Q    + P     IL L ++
Sbjct: 675 EGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQ 714


>gi|330469358|ref|YP_004407101.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328812329|gb|AEB46501.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 621

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/527 (25%), Positives = 234/527 (44%), Gaps = 31/527 (5%)

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           A  LG     +   +   L  +  +  D    +L +             R R  D Q   
Sbjct: 81  AEALGRTVEVIQLRLVRDLDLVADDIADRMARLLAAIATG----YARALRDRTLDEQE-- 134

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
            I R   ++ ++ +              + S       A  D LT +PNR  F +RL   
Sbjct: 135 AIRRAALIARADAE-----------RALRASEARFRHQATHDPLTDLPNRTLFAERL-AA 182

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +     DD  R  +  +DID++K+IND  G  +GD  LV+   R+   ++   ++ARL G
Sbjct: 183 VCTEHRDDVHRVGLCFLDIDRFKRINDSYGHQIGDRALVAAAHRLSRAVEPH-LVARLGG 241

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I++     +  +   A +   ++A P+ +   ++TVTAS+G      +  T  ++ 
Sbjct: 242 DAFMILVERSTGTGDVVAVAESALAALAEPVLVDGHDVTVTASVGVVERQVTGTTPDDLW 301

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A   ++ AK  GG     +     S    R  +   +   +E  E YL Y P+  L D
Sbjct: 302 RAAGSTLHWAKSAGGAGWALYDAERDSREQARQALSAAIPGGLERGEFYLDYQPLTSLQD 361

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             ++G+EAL++W HP+ G +    F+ +AEE  +I  +  ++L    R+ + W      P
Sbjct: 362 GSVLGVEALVRWQHPQLGVLRPDSFIGLAEETGLIVPLGSWVLAEACREAVGWSAATGEP 421

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P ++ +N+A + L   +L + +  L+ +T   P+R++L  +ES++M + E     L  L 
Sbjct: 422 P-YVSVNLAVRQLRRPDLVQEVCGLLRRTGLPPNRLQLEITESMMMSSAEEPVRALRALA 480

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS------TEKRIA---ILRSII 903
            +G+ + +DDFGT  S L+YL  +P   +K  G  + G            A   IL +++
Sbjct: 481 DLGVRIAIDDFGTGYSNLAYLRDLPVTELKVAGEFVRGLRAPEAADPGSRADERILAAMV 540

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +A  +  T+ A+ +        L  +GCD  Q  H+  P   + IL
Sbjct: 541 SLAHALGLTVTAEGVETAEQADRLRAIGCDAGQGWHLGRPAPADQIL 587


>gi|149180615|ref|ZP_01859119.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
 gi|148851768|gb|EDL65914.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
          Length = 656

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/442 (27%), Positives = 226/442 (51%), Gaps = 12/442 (2%)

Query: 521 EQKKSLEGI--LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           E++   E       A+ D+LTG+ NR    + L        T ++    ++++D+D +K 
Sbjct: 210 ERQYLDERETLNYMAYHDSLTGLKNRSFIQEALAK-----KTAESQAFHLLLLDLDYFKH 264

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G  +GD+VL  +   I   L   DI  RL G+ F I+  +EN +  + +F +++ 
Sbjct: 265 INDTHGHFIGDEVLKQVAEFIKSKLAENDIAGRLGGDEFVILYHNENRTYTVEEFCLSIL 324

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              + P+ +  R++TVT SIG +++  +  T  ++L  A++++Y  K  G N    F   
Sbjct: 325 DYFSQPLVIDGRQMTVTPSIGVSAFPENAQTPGDLLVKADISLYKTKGDGRNSFTIFNEQ 384

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +       ++ DL  A+ N E  + Y P++ L +++++G EAL++W+HP+ G IS  E
Sbjct: 385 LEKRFNQEITLQGDLSKALLNQEFEVHYQPMVSLKEKKVIGFEALLRWNHPEKGMISPGE 444

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAEE  +I  I  ++++   + +  W          I IN++ K     ++ E +  
Sbjct: 445 FIHIAEETGLIVPIGEWVVKEACQQVHEWNRML-DKSYSISINLSLKQFSKKDIYEVLTG 503

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I  +  SPS + +  +ES+ M N E + L L + ++ G  +++DDFGT  S LSYL   
Sbjct: 504 IIEDSGMSPSLVTIEITESMAMTNTEHTLLTLKKFKENGYGISIDDFGTGYSSLSYLKDF 563

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              T+K + S +     + K  AI+++I+ +A N+   ++A+ +        L    C+Y
Sbjct: 564 SIKTIKIDRSFIKSVNDSGKDDAIVKAILSIAGNLGLEVVAEGVELPHQEHFLLSQHCNY 623

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q  H + PL    +L  L+++
Sbjct: 624 AQGYHYSKPLNSRDLLSYLEKK 645


>gi|330940757|gb|EGH43755.1| sensory box/GGDEF family protein [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 454

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 204/448 (45%), Gaps = 10/448 (2%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  DIT++ ++ + +   A  D+LTG+ NR +   R+         D  L   +++ID+
Sbjct: 3   AIIRDITQRVEADKLLKHAAEYDHLTGLANRSTLKRRIKEAC-----DAQLSAAILLIDL 57

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND LG A GD VL   + R+ E +    +++RL G+ F + L    +  K    
Sbjct: 58  DGFKDVNDTLGHAAGDFVLKVTSHRLREHVPACHMVSRLGGDEFVVFLSDTADPDKAIKL 117

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            +A+   I  PI   +  I + ASIG +  + +     +ML NA+LA+Y AK  G + V 
Sbjct: 118 GLALIAVIEEPIEFEDNSIYIGASIGVSVRSGADYDDEQMLGNADLALYQAKSDGRSLVR 177

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F     ++      +   +  A  N E  L Y P +RL D  I G EALI+W+HP  G 
Sbjct: 178 TFTSEHRQTASRRGALSSSMRQAWANKEFELYYQPQVRLADGRITGAEALIRWNHPTLGV 237

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S + F+   E   +   +  ++L         WR+        I +N+ +      +  
Sbjct: 238 VSPAVFLPALEAGLLAVPVGEWILRSACEQAAQWRNTGCEE-FRIGVNLFAAQFRMRDFA 296

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +++ +         ++L  +E++++ N +R    L  LR +G+ +  DDFGT  + LS
Sbjct: 297 EMVESALEDFSLPAHSLELEITENIILRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLS 356

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   P   +K + S ++G   ++K   I+ +++ +A      + A+ I        +  
Sbjct: 357 LLKDYPVTRLKIDRSFVSGVERSKKDEVIVEAVVRLANGFNLQVTAEGIETREQESLMRH 416

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
             CD  Q      P+  +   +    R+
Sbjct: 417 YVCDEGQGYLYGRPMPAHEFTERYISRY 444


>gi|323694838|ref|ZP_08108993.1| hypothetical protein HMPREF9475_03857 [Clostridium symbiosum
           WAL-14673]
 gi|323501154|gb|EGB17061.1| hypothetical protein HMPREF9475_03857 [Clostridium symbiosum
           WAL-14673]
          Length = 736

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/581 (21%), Positives = 232/581 (39%), Gaps = 25/581 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++     G  + G   + E    A+  S  D V+  D+          +    GL   
Sbjct: 173 MRLRRNTERGRTAPGFDYNREFLYEALASSTDDYVFIGDMKTGIFRYPAAMVEEFGLPGE 232

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      W   IH  D+  F          R      E+R R    ++ W+  R R + 
Sbjct: 233 IVENAAAVWGVLIHPEDKKGFLESNQDIADGRVEHHNIEYRARNVFGEWCWLRCRGRMVR 292

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G    + G   ++ + K  +         D++TG+ NR      L   +     DD 
Sbjct: 293 DNEGKPEYFAGFITNMGK-KNLI---------DHMTGLYNRY----ELEGTVKKHLVDDG 338

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  +M++D+D++K +ND+   + GD+VL    + +  LL     + RL G+ F I++++
Sbjct: 339 RKFGLMILDMDEFKNVNDLYDRSFGDEVLRVTAQMVSSLLPSNARMYRLDGDEFAILILN 398

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  +       +R  +        ++   T S G+A++        E++K A  ++ H
Sbjct: 399 -GDWDEHIQIFNRIRYKMHRQQEFEGKKYYCTVSAGYAAFPEDGSQYLELVKCANYSLEH 457

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLE 739
           +K  G + +  F           ++  E L  ++E+      + Y P +     ++ G E
Sbjct: 458 SKLLGKDRITCFSPDILPEKERRLELMELLRESIEHGFAGFSVAYQPQVEAATGKLFGAE 517

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +W   K+G+IS  EF+ + E   +I  +  ++  + A     WR     P   + IN
Sbjct: 518 ALARWTCGKYGSISPGEFIPLLERSGLINQLGRWIFSQAAAQCGKWRR--YRPDFRMSIN 575

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   L   ++   M   + +    PS + L  +ES  M   E    +L +L   G +L 
Sbjct: 576 VSYHQLRKGDIVPDMLKKLEQFAMPPSSLTLELTESYFMKEEESRENVLDKLHGAGFTLA 635

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKD 917
           +DDFG   S L  L  IP D VK +   + G TE R     + +I  +  N+   +  + 
Sbjct: 636 MDDFGMGYSSLLSLKNIPVDVVKIDRGFVKGITEDRFNAIFIGAITELCHNVGKQVCLEG 695

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERF 957
           +  E + + +   G + IQ  +   P+      +  L    
Sbjct: 696 VETEEEYRAVRDTGLELIQGFYFGLPVAAEEFERQWLSREL 736



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 1/169 (0%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT I +R++  DRL  +++L+  +  +   V   DI+    IND  G   GD++L+ +++
Sbjct: 17  LTQIMDRRNGKDRLAELIELARQEQKMLTVVFY-DINGLHLINDTYGHHEGDNLLLYVSK 75

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I E L  PD+L RLS + F + L  E           A+                    
Sbjct: 76  IIEEGLTEPDLLFRLSEDEFILALYDETEDGAAERMEKALELLEKKREQFGIYYDASFCY 135

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              A + S K + +E++  A+  MY  K          R+         
Sbjct: 136 GVTAVYPSDKFSVNEIITRADERMYIQKRNFRIDRAGMRLRRNTERGRT 184


>gi|289677766|ref|ZP_06498656.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 542

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 212/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  V+ + +D +K IN+
Sbjct: 98  RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAVLCVGLDDFKGINE 156

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 157 QFSYQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 216

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 217 EAPFIVGDQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 276

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 277 EMRRRRELEKDLREALPLNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 336

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 337 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 395

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 396 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 455

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 456 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVMTEGCHEGQG 515

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 516 YLYSKPLPGRELLAYLKQ 533


>gi|104780495|ref|YP_606993.1| signal transduction protein [Pseudomonas entomophila L48]
 gi|95109482|emb|CAK14183.1| putative signal transduction protein; GGDEF/EAL domain [Pseudomonas
           entomophila L48]
          Length = 754

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 220/442 (49%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LTG+ NR+ F       L   + +D +   VM +DID +K+
Sbjct: 276 LSQLDQARVSLQQAAHFDALTGLVNRRGFNQVFAERLAEQSANDGM-LAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +   I    +  D+++R  G+ F  I+ S NN  +    A  + 
Sbjct: 335 INDSLGHVAGDELLKVIAGHIKAATRGNDLVSRFGGDEF-CIVTSLNNRDEARHLAQRIM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           + +  PI+L  R + +T SIG + +     ++ E+LKNA+LA+Y +K  G N +  F   
Sbjct: 394 QRMKEPIDLTGRRMVMTTSIGISIFPDDGHSTEELLKNADLALYQSKGCGRNSLHFFSSG 453

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +    +  + +E      E   L + Y PI  L    +  LEAL++W HP+ G +S  
Sbjct: 454 LKTRATLELQLEEELRLALFEERGLCVYYQPIFDLHSRRVSKLEALVRWQHPQHGLLSPD 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++L++L R   D+           + + +N ++  L   EL   ++
Sbjct: 514 RFIPIAEANGLIAELDLWVLRRACEDLAQLNRH-GYGHLKVTVNCSALTLGREELATEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +   +  +++L  +E+ +MG+   +  LL R+R  G++L++DDFGT  S L+YL  
Sbjct: 573 MALFQAGLAARQLELEVTENALMGDIHHTIELLKRIRAQGVALSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + S +      +K   I+++II MA  +   ++ + +        L   GCD
Sbjct: 633 LPLDVLKIDRSFIQEVPGNQKDREIVQAIIIMAHTLHLKVVTEGVETPEQQAFLAAHGCD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q   ++ PL  + +  +L+ 
Sbjct: 693 CLQGYLLSRPLPPSELRPVLER 714


>gi|304408638|ref|ZP_07390259.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|307305467|ref|ZP_07585215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
 gi|304352459|gb|EFM16856.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|306911770|gb|EFN42195.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
          Length = 749

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/591 (21%), Positives = 247/591 (41%), Gaps = 24/591 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATI- 437
           + +        LA+    +    + +R ++         +   +     +   P    I 
Sbjct: 165 LDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIV 224

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           L       +   + +L       + N    L   +   +   Q E      + +  ++ +
Sbjct: 225 LPQDIDIANFNPKMFLS----ASQSNELVGLFEHLAQDK-MWQGELVGLRGNGEEFYLDL 279

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +      NG    +  + +DI+E+KK+ + I   A  D+LTG+ NR +    + + +  
Sbjct: 280 IVTTFREPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSFITS 339

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +       + M++D+D +K++ND  G   GD +LV + R+I E L    + ARL G+ F
Sbjct: 340 DSLTPG--FSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEF 397

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L    N  ++A  A  + K +A    L   + +  + SIG A +    +   ++L  
Sbjct: 398 ALLLPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNC 457

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY +K  G N    F      +      +   L  A++     L Y PI+      
Sbjct: 458 ADQAMYISKANGRNRYHFFTEQMQLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGL 517

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IV  E L++W H +   I   EF+ IAE   +I  I   +     + I+  +      PI
Sbjct: 518 IVRAEVLLRWQH-EGQFIPPDEFIPIAENSGLIVDIGRDVRLGAMQTILEMQAH--NWPI 574

Query: 795 FILINIASKDL----LDNELCEGMQAL---ISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            + +N+++ +     L +   +   A+   +  T +   R+ L  +ES++M        +
Sbjct: 575 NLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDV 634

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPM 905
           L  LR  GI ++LDDFGT  S LSYL   P D +K + S +    E +   A++ +I+ +
Sbjct: 635 LNGLRIKGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRL 694

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  ++ T+ A+ +  E  +K +       IQ      P+   +   LL ++
Sbjct: 695 SHALDLTVTAEGVETESQLKFVMSNHIQEIQGYLFYKPMPKVAFFALLAKQ 745


>gi|296116456|ref|ZP_06835070.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Gluconacetobacter hansenii ATCC 23769]
 gi|295977049|gb|EFG83813.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Gluconacetobacter hansenii ATCC 23769]
          Length = 863

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 215/438 (49%), Gaps = 15/438 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q+ + + I   A  D LTG+PNR       T          +L   +MV+++D+++KIN+
Sbjct: 405 QEHARQSIDRLAHYDGLTGLPNRAWLRHYCTQA-----RQHSLARVIMVLNLDRFQKINE 459

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G A GD +L+ + RR+   L   DIL R  G+ F  ++++E    + A  A  + + +
Sbjct: 460 AMGHAAGDTLLMEVARRLRHALLPDDILTRTDGDEF--VIVTETAPQQAAVQAERLLRIL 517

Query: 642 AMPINLLEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             P+ + + E+  +ASIG +             ++K+A  A+  AK  G N    F    
Sbjct: 518 DAPLMIEQVELRPSASIGISISDGTDPSDEMKTVMKHAYSALSQAKEAGRNCYRFFSPEM 577

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            R   DR+ +   L  A+    L LVY P +      + G+EAL +W  P+ G IS   F
Sbjct: 578 NRAAEDRITLAAALRRAIREDRLSLVYQPQVMTGSRHLHGVEALARWIDPELGFISPGRF 637

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE   I+ +  + L    R + SW       PI + +N+++    D  L + +  +
Sbjct: 638 IPLAEETGQIEILGEWSLRTACRQMTSWMMHGIDIPI-VSVNLSAIHFRDRNLPDTIARI 696

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P R+ +  +ES ++ N E++  ++  +R++G  +++DDFGT  S LS L  +P
Sbjct: 697 MHETGMPPERLTIELTESTMIDNFEQTVEIVTAIRELGCGVSMDDFGTGFSSLSNLASLP 756

Query: 878 FDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              VK + S M G  E      +++R+I+ + +++  T++A+ +  +   + L  M CD 
Sbjct: 757 VSEVKIDQSFMKGFEEPAGKVYSVVRAIVRIGQSLGMTVVAEGVETQAQYQLLRAMQCDV 816

Query: 935 IQDSHVASPLGFNSILKL 952
           IQ    + PL    + + 
Sbjct: 817 IQGYLFSRPLSPTDLAQW 834



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 2/110 (1%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +   D     +   P   T+ G +   + G   + L   H  D    +           
Sbjct: 140 GILVLDGQSRIMHANPAFGTLCGYSEDEVAGNDFSILFSGHGRDIRTLQQFRQQV--GEG 197

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
              + + + R  D    W+     P+ + +G + + I I +D++  +   
Sbjct: 198 NSFEIDIQARRRDGTNIWLRAAATPVHDDHGALEQTIIILSDVSRDRDLR 247


>gi|260463420|ref|ZP_05811620.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259030745|gb|EEW32021.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 449

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/444 (24%), Positives = 213/444 (47%), Gaps = 10/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       AF D LTG+ N + F D++  ++   A D     TV ++D+D +K IND+ 
Sbjct: 9   QANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDP-APFTVGILDLDGFKPINDLF 67

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GDD+L+ +  R+   +     + R+  + F  +     +    A+ +  + + ++ 
Sbjct: 68  GHKAGDDILIQVAMRLRASMDDHSTVCRIGADEFAFLYPLVFSEEAAAEKSRMLIEILSA 127

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P ++ ER   ++AS+G + + S   T+  ++  AE A+YHAK  G   V  +      + 
Sbjct: 128 PYDVGERTARLSASVGCSLFYSGDETTEILINKAETALYHAKRSGRGRVVVYTREMEEAA 187

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    I++ L  AV   E+   + PI+ L   + +G E L +W     G +  + F+ IA
Sbjct: 188 KRVTRIEQALRRAVSAGEVEPHFQPIVDLNTRQTIGFETLARWTDRDLGAVPPTVFIPIA 247

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  ++  +L +      SW        +F+  N++   L+D      + A++ +T
Sbjct: 248 EERGIIGPLSQLVLRKATEAARSWPK-----DLFLSFNLSPSQLVDQNTGLHILAILDRT 302

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P R+++  +E+ +M +P  +  ++  LR++GI ++LDDFGT  S L  L    FD +
Sbjct: 303 GFDPRRLEIEITETGLMNDPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFDKL 362

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + ++   + R    I+R+I+ M + +   ++A+ I  E     L + GC   Q   
Sbjct: 363 KIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEGIEEEAQADRLVQFGCAGGQGYL 422

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
              P+  ++ L  L++ F      
Sbjct: 423 FGKPVDADATLGYLRDSFRGALRA 446


>gi|77460708|ref|YP_350215.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384711|gb|ABA76224.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 683

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 213/446 (47%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +L  A  D LTG+PNRQ    +L  IL  +      R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGKLQR-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L++L  R+         LARL G++F ++        + A+ 
Sbjct: 290 DDFKGINEQFSYQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   +  P  L  +EI + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEAPFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKTRSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+   + YLVY P I   D  +VG+EALI+W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLRDALLRDQFYLVYQPQISYRDHRVVGVEALIRWQHPEHGL 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+   I AI  ++L++  + +  W DQ     + + +N+++  L   EL 
Sbjct: 470 VPPDLFIPLAEQNGTIIAIGEWVLDQACKQLRDWHDQ-GFVDLRMAVNLSTVQLHHAELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQMYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIIS 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 EGCHEGQGYHYSKPLPARELSIYLKQ 674


>gi|254516247|ref|ZP_05128307.1| hypothetical protein NOR53_2979 [gamma proteobacterium NOR5-3]
 gi|219675969|gb|EED32335.1| hypothetical protein NOR53_2979 [gamma proteobacterium NOR5-3]
          Length = 827

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/558 (23%), Positives = 246/558 (44%), Gaps = 14/558 (2%)

Query: 404 GERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +RQSL       + + +   D  +  +       T   L    + G     + +   + 
Sbjct: 245 LQRQSLSASVFEHAAESIVILDAAQTIIDVNRSFETSTALKKSDVQGQSLQAVKHRL-DS 303

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F  + ++ +    G  + E     AD   H  + RI  + N       ++ + +DIT
Sbjct: 304 SAQFEALWNTVLQ--SGSYEGEVESIHADGTKHVELCRINAVLNEQEQAHHFVCLYSDIT 361

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             K   + +   A  D LTG+ NRQ F DRL   L       N    +  IDID +K IN
Sbjct: 362 RLKHHEQELESIANFDTLTGLVNRQLFEDRLEQSLANCERRGN-HLALAYIDIDSFKHIN 420

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GDD L+ +   +   L+  D LAR+ G+ F  ++        +      + ++
Sbjct: 421 DSYGHTAGDDYLIGIANNMQLALRDTDTLARIGGDEFIALITDLERLDDLEPVTQRLLEA 480

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             +P+ + +R++T +ASIG A +      +  +++ A+ AMY AK +G   +  F     
Sbjct: 481 ATLPVMVNDRQLTGSASIGIARYPLDGEDAGRLIRCADQAMYEAKQQGKRRLHVFDRGLL 540

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R       +++  A+++ E  L+Y P I L+  E+VG EAL +W+HP+ G +  +EF+ +
Sbjct: 541 RVSASR--DNVEAALDSGEFELLYQPKINLISGELVGFEALARWNHPQRGLLQPAEFLPL 598

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            +   +      ++L++  + I S         + I +NIA   L   +  E + + +  
Sbjct: 599 IDRENLQLEFGDWVLDQAVKQIESGLQS--NISLPISVNIAGVHLRQTDFVESIASKMQA 656

Query: 821 TL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  +++   E+  + +      ++     +GIS +LDDFGT  S L++L  +P  
Sbjct: 657 VGSMGPQLLEIEILETSALDDLSAVAGIISSANALGISFSLDDFGTGFSSLTHLRRLPVS 716

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           TVK + S +     +E+  AI+ SI+ + + +   ++A+ +      K L  + C Y Q 
Sbjct: 717 TVKIDTSFVRDMLESEEDFAIVSSIVSLCRGLNRRVVAEGVSSVAHAKALIGINCIYGQG 776

Query: 938 SHVASPLGFNSILKLLKE 955
             +A P+    +   + +
Sbjct: 777 FGIARPMRRQELSHWIND 794



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           + +  + D ++  D     +  +  +A +  G+   S      ++   +   D  +    
Sbjct: 129 IIMESTDDYIYFKDTHHILLAGSQSMAGLCAGIDHWSEFTSKSDYE--VFPEDLADDYYS 186

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L+S V       +     R  D +  W+  R  P+ +  G ++   G+A DI+ + + L+
Sbjct: 187 LESTVYDSLLMAKEVQAYRHRDGKQGWVDNRKYPILDERGALIGLYGVARDISTEIQYLQ 246

Query: 528 GILCNA 533
               +A
Sbjct: 247 RQSLSA 252


>gi|124265407|ref|YP_001019411.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124258182|gb|ABM93176.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 816

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/456 (28%), Positives = 227/456 (49%), Gaps = 10/456 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G++ +           ++    +   AF+D LT +PNR+ F   L   +  +    N
Sbjct: 347 DEIGELAQAFETMR--LAVREREGEVRRLAFEDGLTQLPNREQFRADLRAAIQHAQAR-N 403

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILI 622
               V+++D+D++K +NDVLG   GD +L  + +R+  E  +  D++ARL G+ F +++ 
Sbjct: 404 EPCAVLMLDLDRFKHVNDVLGHRFGDRLLQEVAKRLTQEARRSNDVVARLGGDEFAMLMP 463

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S  +       A  ++++   PI+L +  + + A IG A   +  + +  ++  AELAMY
Sbjct: 464 S-ADIALALGIAQRIQRAFERPISLDDHTVDLGAGIGIACCPAHGVEADTLVSRAELAMY 522

Query: 683 HAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK    G  V    +     + + +  +L  AV+  +L L   P I L    ++G EAL
Sbjct: 523 AAKQHQLGVKVYDAALDMSSDESLSLLSELRTAVDRDQLRLYLQPKISLATGAVLGAEAL 582

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +   +F+  AE+   I+ +  +M+ER A  +         P + I +N++
Sbjct: 583 VRWQHPQRGLVPPGKFIPFAEQTGFIRVLTGWMIERSAMVLRQMNA--GAPALKISVNLS 640

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++DLLD +L   MQ LI     +P  + L  +ES +M +P+R+   L RL  +G  L++D
Sbjct: 641 TRDLLDQDLPAKMQRLIDTLALNPGSMCLEITESAIMDDPQRALQTLERLHAMGFKLSID 700

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +P D +K + S +           I+RS I +A N+   ++A+ I 
Sbjct: 701 DFGTGYSSLAYLKRLPVDELKIDQSFVFNMERDLDDAKIVRSTIDLAHNLGLNVVAEGIE 760

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                K L  +GCD  Q   VA P+        +++
Sbjct: 761 TAKAWKLLQALGCDEAQGYFVAKPMPEALFADWIRD 796


>gi|171059626|ref|YP_001791975.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170777071|gb|ACB35210.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 848

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/571 (22%), Positives = 234/571 (40%), Gaps = 11/571 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            V           +  +  +     S D +   D     V T P    + GL +G++ G 
Sbjct: 279 QVWRDLSLELAQQARLQVAAQVFEASLDALIVTDAQHRIVATNPVTQALTGLDAGALQG- 337

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            R     +    +    +   + +  R G  Q E  + +           I       G 
Sbjct: 338 -RTLASLLADTMQAQVISNALAELP-RLGHWQGELTLGSPLGALPVQAHLIDMAGLERGG 395

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               I +  D+ E+      +   A  D LTG+PNR     ++   +            +
Sbjct: 396 AGGCIVVLRDLRERLAQERRLRELALTDALTGLPNRLQLDQKVRDEVQRCQKATGG-FAL 454

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++  +D++  IND LG   GD VLV + RR+   ++  D +ARL G+ F ++L   +++ 
Sbjct: 455 LLFGLDRFTHINDSLGHGCGDRVLVEVARRLSANVRLGDAVARLGGDSFVMMLKD-SDAA 513

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR- 687
                A  + + +A P+ L    +T+ AS+G A + +    +  +LKNA+ AM+  K R 
Sbjct: 514 AAEPIARRLLEQLAEPLALDGLRLTIKASVGIALFPADGADADNLLKNADSAMHRVKERQ 573

Query: 688 -GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            G       +++     R+ +   +  A+   E  L Y P + L    ++G E L +W  
Sbjct: 574 GGALRFYQPQMNDDLLARMQLDHAMRQALARGEFRLHYQPQLDLHSGAVIGAEGLCRWRD 633

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            + G +S   F+ +AEE   I  +  ++L        SWR Q    P  + +N+++    
Sbjct: 634 AERGEVSPGRFIPVAEETGFIAELGHWVLCEAVAQAASWRRQGLRMP--VSVNVSALQFQ 691

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                + +  ++++       ++L  +ES+++G+ +     L RL  +G+ L +DDFGT 
Sbjct: 692 AAGFVDSVAGVLAQAQLPAELLELELTESILLGDIDEIVGQLQRLADLGVKLAIDDFGTG 751

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L YL  +P   +K +   +          AI R+I+ + + +   +IA+ +      
Sbjct: 752 YSSLRYLKRLPIHRLKIDRDFIRRLPDDPSDAAITRTIVDLGRALHLQVIAEGVETPEQH 811

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             L  MGC   Q    A  L       LL++
Sbjct: 812 ACLAAMGCHEYQGFLFAPALPATQFEALLRQ 842


>gi|254784943|ref|YP_003072371.1| thioester reductase [Teredinibacter turnerae T7901]
 gi|237684417|gb|ACR11681.1| thioester reductase [Teredinibacter turnerae T7901]
          Length = 614

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 223/460 (48%), Gaps = 17/460 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  ++K+ E I    + D+LT +PNR+  +  L   L+    ++N +  ++ ID++++K 
Sbjct: 151 IDARQKAEELITHQLYHDDLTSLPNRRRLMQELEIQLER-MREENRQGALLFIDLNRFKA 209

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI---------SENNSLK 629
           +ND LG AVGD +L ++   +   L   D ++RLSG+ F ++L            +    
Sbjct: 210 VNDTLGHAVGDLLLQAVANLLRTTLAAGDFVSRLSGDEFVVLLDASHIDSKHSDCDIIPL 269

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  ++ + + PI   E  + +T SIG   +    + ++++++NA+ AMY AK RG 
Sbjct: 270 TDRVVDKVKAAFSHPIQAGEHLLHITPSIGIEIFPHENVDTAKIMRNADAAMYIAKSRGP 329

Query: 690 NHVESFRVSSFRSDRVMIK--EDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           N    +  S  +   + ++  ++L  A+ +  E  L Y P       E +G EAL++W+ 
Sbjct: 330 NSAVYYHPSMCKEVELRLEIEKELKTAIRSADEFTLFYQPQYA-ATGECIGAEALLRWNT 388

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDL 805
            +      S F+ +AE+  ++  +  ++L R    +   ++         I +N+++   
Sbjct: 389 AQRNLSCPSMFIPVAEDTGLMLELGRWVLFRACSQLRELQESCVPNTFKRISVNVSAAQF 448

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                   +   I +T  +P+ + +  +ES ++ N   +   +G LRK+GI +++DDFGT
Sbjct: 449 NQGNFLNDLINAIDQTGINPNMLCIELTESSLIKNVSDTVRKMGELRKLGIQISVDDFGT 508

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P   +K + + +    E     AI+ +I+ +  ++  +IIA+ +    +
Sbjct: 509 GYSSLAYLSQFPISALKIDQTFVRNLHENKGNNAIVETIMSLGDSLNLSIIAEGVECREE 568

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +  L  +GC+Y Q      PL ++ +L L  +  P +  +
Sbjct: 569 LDALQSLGCEYYQGFLFKPPLPYDQLLPLALQGQPTISYS 608


>gi|218676030|ref|YP_002394849.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324298|emb|CAV25617.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 728

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 124/453 (27%), Positives = 219/453 (48%), Gaps = 19/453 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K+  E +   A+ D LT +PNR  F+  L   +        +   V  ID+D++K++
Sbjct: 262 SSLKQRNEEVEFLAYNDPLTKLPNRSQFIKCLERCIHRCKQSKEV-FAVFFIDLDEFKRV 320

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLK----------FPDILARLSGNRFGIILISENNSLK 629
           ND LG   GD++L  + + +   LK             ++AR+ G+ F + L        
Sbjct: 321 NDNLGHQAGDELLSEVAQTLTNSLKKMGQIATKDEPQCMIARVGGDEFLLRLSGIKTQDT 380

Query: 630 IADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           ++ FA  +  S+  PI L      + V AS+G A +  S  TS +++K+A++AMY AK  
Sbjct: 381 VSKFASDIVNSLKQPIYLSSVGESVVVGASVGVALYPDSGNTSEDLVKSADMAMYSAKEN 440

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQW 744
           G      F     +       I+++L  A+++  +  L+Y P   L    +VG+EALI+W
Sbjct: 441 GKGRYCFFNQEIEQKILARGVIEKELRAAIDDFSQFRLLYQPKFDLKTGHVVGVEALIRW 500

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASK 803
            HP  GNIS  EF+ IAE   +I  +  +++ +  +DI  W  + ++PP  ++ IN++ K
Sbjct: 501 HHPTKGNISPIEFIPIAEATDIIHTLGDWIVMQACKDIQEWDFRHHLPPEFYVAINLSPK 560

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  ++     Q    K     +R+ +  +E+ +M +   ++  L  LR +GI + LDDF
Sbjct: 561 QLYGDKALRTFQYQTQKHQVEVTRLHIEVTETALMFDKVSAKKTLDDLRSMGIKVWLDDF 620

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L +L     D +K + S +          A+  +++ MA  +   ++A+ I   
Sbjct: 621 GTGYSSLGFLREFNIDGLKIDRSFVNDLECDMNDRALCAAVVSMAHQLGIKVVAEGIETT 680

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I    L +  CDY Q   +A P+   ++ + L+
Sbjct: 681 IQSSFLAQSHCDYGQGYLLAKPMCAETLSEKLE 713


>gi|238060306|ref|ZP_04605015.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237882117|gb|EEP70945.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 611

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 206/443 (46%), Gaps = 13/443 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + S       A  D LT +PNR  F +RL   +D        R  V  +D+D++K +ND
Sbjct: 172 LRDSEARFRHQATHDPLTDLPNRTLFTERLAAAIDSPGR-GADRVGVCFLDLDRFKVVND 230

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +LVS+  R+   L    ++ARL G+ F I++     +  +   A A   +I
Sbjct: 231 SLGHHVGDMLLVSVADRLRRALGEH-LVARLGGDEFVILVERTAGTDDVVKVAEAALAAI 289

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +   E+TV+ASIG      +  T  ++++ A+  ++ AK  GG     F     R
Sbjct: 290 NEPALVDGHELTVSASIGIVERPVAGTTPIDLMRAADATLHWAKAAGGARWTLFDADRNR 349

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +     +   +  A+E  E  L Y P+  L D  ++G+EAL++W HP+ G +    F+ 
Sbjct: 350 RELARYALSAAIPAALERGEFQLDYQPLTSLRDGRVLGVEALVRWRHPELGKLYPGSFIE 409

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  +  ++L    R+  +W         F+ +N+A + +    L   ++ ++ 
Sbjct: 410 LAEETGLIVPLGSWVLAEACREAATW-SSFGTAAPFVSVNLAVRQVHRPGLVREVRDVLE 468

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P R++L  +ES +M   E     L  L  +G+ + +DDFGT    L+YL  +P  
Sbjct: 469 RTGLPPERLQLEVTESTMMSAVEEPVRALRVLADMGMRIAIDDFGTGYCNLAYLRDLPVT 528

Query: 880 TVKFNGSLMTGS--------TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            +K  G  + G         +     IL S++ +A  ++ T+ A+ +  E     L  +G
Sbjct: 529 ELKVAGEFVAGLRAPADDPASRTDERILASLVSLAHALDLTVTAEGVETEGQADRLRTIG 588

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD  Q  H   P     +L+ L 
Sbjct: 589 CDAAQGWHFGKPAPAARLLERLA 611


>gi|302671791|ref|YP_003831751.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396264|gb|ADL35169.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 909

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/583 (19%), Positives = 236/583 (40%), Gaps = 38/583 (6%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLA 441
              ++Q ++     +  + S        +   G  ++  DI    +              
Sbjct: 345 TIRILQSIITKRIQTNSLASSFASLEAVLDNVGSSIYVRDIGTGVLLFANRSFKKNFSKE 404

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               +  +  +   I                    G  +   + R+      W  +    
Sbjct: 405 LAE-NKLMELFESNIPP--------------RSHSGNYEVNHKARSK-----WYDVYYTR 444

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   +G  +    I  DITE+K   + I   A+ D LTG+ NR      L   +D +  +
Sbjct: 445 IKWVDGRPVSLCAIY-DITEKKLYQKRIEQQAYTDFLTGLYNRMCCEKDLAKYVDDA-RN 502

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +M +D+D +K IND LG   GD +L  +++ +  +    +   R+ G+ F II+
Sbjct: 503 SGRTGALMYLDLDDFKHINDSLGHQYGDVLLQDISKAMSRIEGISNSCYRMGGDEFVIIV 562

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
             +N    +      ++ + A P  L + +   T S+G   +  +     E+++ +++AM
Sbjct: 563 PPDN-YHLMDKIIEEIKDAFATPWYLKDTDYYCTMSMGLVRFPENGDNVPELIRKSDVAM 621

Query: 682 YHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVEN--SELYLVYHPI-------IRL 730
           Y AK  G N +  +  +       R+ +++++  A+     E  + + P+          
Sbjct: 622 YEAKKSGKNRIAEYSDNIDSSSIHRLDLEKNMFDAIGKSCEEFEVYFQPVITNEKKARSG 681

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              + +G EAL++W+  K G ++  EF+ +AE L +I  I   +L++       W +   
Sbjct: 682 KGIKHIGAEALVRWNSDKLGFLNPDEFVPLAEYLGLINPIGNHVLKKACECCRQWNESGV 741

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + +N++   ++  ++ + ++  I +    P  + L  +E + + +  R++  L  
Sbjct: 742 G-DFSVSVNLSVVQIMQTDIVDIIKECIEENNLKPENLILELTERLAINDLARTKQTLLD 800

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKN 908
           ++ +G+ L LDDFGT  S LS +  +PFD +K +   +          A +R +  + + 
Sbjct: 801 IKDLGVRLALDDFGTGYSALSSIRALPFDIIKVDKDFVKDIATDDYSQAFVRMMAQLGET 860

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           I   I  + I  +  ++ +  MG  YIQ  +   PL   +  +
Sbjct: 861 IGADICVEGIETKEQLEAIKNMGVKYIQGYYYDKPLRRAAFEE 903


>gi|299537148|ref|ZP_07050451.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lysinibacillus fusiformis ZC1]
 gi|298727389|gb|EFI67961.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lysinibacillus fusiformis ZC1]
          Length = 984

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 126/570 (22%), Positives = 248/570 (43%), Gaps = 14/570 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLASGSMHGPIR 450
           A     + +                 +W  D I  + +  +  +  ILG+    ++    
Sbjct: 269 AFKLLEKTLNDTLANYHSIFDNLDAGIWMRDSIRGNMLFASKGLEGILGIPLARLYEDSE 328

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W+  IH   R+      D     +    Q  +R+   +NQ  W++ +I P  +  G++ 
Sbjct: 329 VWINMIHPAHREEVLAYTDHLASGK--SYQVIYRILTGENQTKWLLEQIVPRVDQEGEVN 386

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              G+  DIT++ +  + +    + D LTG+PNR S  D++ T+             ++ 
Sbjct: 387 HIFGLVTDITKEIEREKKLNYLVYYDELTGLPNRLSLHDKVDTLCLA-----GEPFALLY 441

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           I I+++  +N+ LG  +GD++L ++T     L      +ARL    F I++    +   I
Sbjct: 442 ISINRFHILNNALGTKIGDELLRTVTNYFSTLTDDHSYMARLDNQHFIIVMKKYGSKQHI 501

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  + K+   P ++ +  + ++ASIG A +    ++ + +L+NA  A+ +A+ +G N
Sbjct: 502 YALASRLLKTFDTPFSIKDYRLHLSASIGIAFYPEEGLSRNILLENAYSALCYAQQQGRN 561

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +  +   +      +  D+  A+ N E  L + P++      I G EALI+W H +
Sbjct: 562 RFHIYAFTEDITSYKQYVLDRDMRQAMLNEEFELYFQPLVEPQKGIINGAEALIRWHHKE 621

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           WG +S  EF+ +AEE  MI  I  +++++    +  W+ Q ++    I I I+   L+  
Sbjct: 622 WGLVSPGEFIPLAEENHMIHIITDWVIKKACALLQHWKQQGHVLR-TISIKISPIRLMKK 680

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + +Q  +         ++   SES ++ N      +L  L+ +G+ + + DFGT  S
Sbjct: 681 GFIQFVQEQLQVNSIDAHYLQFEISESTILKNSTSVMTVLEELQDMGVKIAIGDFGTGYS 740

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            L  L      T+    + +      R     ++ + I +AK +   ++AK +       
Sbjct: 741 SLESLRTFQPTTLHIYEAFIREIRHDRPIENGLISATIYLAKMLGIQVVAKGVESYEQFI 800

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L +  CDY+Q S     +   +  K+L +
Sbjct: 801 FLKQQECDYLQGSIYTKAVPAKAFEKMLTQ 830



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 11/162 (6%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                 +    +  + A   +    W++ I  D++  + +   I G A     G I +  
Sbjct: 145 SAMKHQLMLHEKHLNYAQHIAAVGSWEYFIQHDKLFCSDNFYHIFGFARSDNDG-IDHVF 203

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            +IH +D +      +            +FR+          +     +   +    + I
Sbjct: 204 QFIHPHDYERTYDAFNDARKGTN--FDSDFRIYHGKTNELRFLQAAAEVIWKDDKPFKMI 261

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           G+  D T  K   +        D    + N  S  D L   +
Sbjct: 262 GVVKDETAFKLLEKT-----LNDT---LANYHSIFDNLDAGI 295


>gi|296446357|ref|ZP_06888302.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Methylosinus
           trichosporium OB3b]
 gi|296256130|gb|EFH03212.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Methylosinus
           trichosporium OB3b]
          Length = 626

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 210/447 (46%), Gaps = 11/447 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++    I   A+ D+LTG  NR         ++   A D+  R  +  +D+D +K+IN
Sbjct: 174 EKEERNARIHRLAYYDSLTGAANRVGLERH-GEMVAAKAIDEGARIALHCVDLDNFKEIN 232

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  +  RI   L   D  AR+ G+ F ++     +   + D+A  + ++
Sbjct: 233 DAFGHRAGDLLLKMVADRIAARLAPGDFFARVGGDEFVVVQAGARSRACVRDYAAKIAEA 292

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P +L +  +T+  SIG A         S +++  ++A+Y AK  G   +  F     
Sbjct: 293 VSAPFDLEDASVTIGVSIGVACAPRDGRDLSTLMQKGDIALYDAKGDGRGRLRFFDSEIE 352

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I+++L  AV   +L + + P++ L    + G EAL++W HP    +S ++F+
Sbjct: 353 ARAAAERQIRQELKQAVAGRQLEVHFQPMVALSAGRVSGYEALVRWRHPSGELLSPAQFL 412

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+  ++  I  + L        +       P   I +N++   +        +   I
Sbjct: 413 PFAEKAGLMNEIGEWTLREACALAAAHL----PPDTRICVNLSPTQIEKPGFALDVARAI 468

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P R++L  +ES ++     +   L  +R++G+S+ LDDFGT CS LS+L   P 
Sbjct: 469 EAAGLPPRRLELEITESTILVENAATMSCLEDIRRLGVSIALDDFGTGCSALSHLRAFPI 528

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +    +  +  AI+R II +A+++     A+ +  +  ++ + R+GCD IQ
Sbjct: 529 DRIKIDRSFVQEAVARPETEAIVRMIIALARDLHAETTAEGVETKEQLRMMRRLGCDEIQ 588

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              V+ P   + +L    ER  + + +
Sbjct: 589 GYLVSPPRSIDDLLA--SERRAVARAS 613


>gi|326776438|ref|ZP_08235703.1| diguanylate cyclase/phosphodiesterase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656771|gb|EGE41617.1| diguanylate cyclase/phosphodiesterase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 738

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 216/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  + L+ +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 254 LRDPLTGLPNRQWLLERTWSALEDA-ESIGTRSALVLIDLDRFRAVNDTLGHLAGDRLLL 312

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +   ++ P++L    + 
Sbjct: 313 QIAERLRLALPRGAEAARLGGDEFAVLLPHTDSTTSAQQVARHLVAELSSPLDLDGLTLV 372

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 373 LEASAGVAVYPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 432

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 433 RALDAGEVELHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 491

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+       G+ A +++       ++L  
Sbjct: 492 YVLETALAQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGGVAARLARHGVPAGALQLEI 549

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 550 TEHVLLEDPQRAADTLAGLTAHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 609

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  I +A ++   ++A+ +  +   + L  + CD +Q   VA+ +      
Sbjct: 610 VDHEDAEIVRCTIDLAHSLGLVVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPQETT 669

Query: 951 KLLKER 956
             L+ R
Sbjct: 670 AWLRAR 675


>gi|311693106|gb|ADP95979.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 578

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/422 (27%), Positives = 218/422 (51%), Gaps = 6/422 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG  NR  F DRL   L  +    + R  ++ ++ID ++ IN+  G    D +++ L  R
Sbjct: 151 TGFINRDLFFDRLQQALLRAERAGH-RLALLHLNIDDFRSINESFGYQKSDQLMMKLAER 209

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L+  D L R+ G+   II+    +SL I      +  ++  P+ +  + + V+AS+
Sbjct: 210 LRHSLRRVDSLMRIGGDELAIIVEKVEDSLDITQIIRKVVNALDEPVTIDGQTVVVSASL 269

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVE 716
           G A++  +  ++  +L+ A  AM+ AK   G     +          ++ ++ DL  A+ 
Sbjct: 270 GVATYPEAGDSAENLLRRANRAMFEAKRDPGTSYRFYDRQLHISAGYQLRLEADLRNALR 329

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L Y P I L  EE+ G+E L++W+HP+ G +   EF+ +AE   +I  I  +++E
Sbjct: 330 GKELELYYQPRIDLATEEVRGVECLLRWNHPERGLVGPDEFIPVAERSGLIVPIGYWVIE 389

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +  + +     +   P +   +N++ +   D ++ E +  +I       S ++L  +ES 
Sbjct: 390 QACKRLQE-SAELGFPGLVFAVNLSFRQFHDRKMTETIFRIIFNANVDTSLLELELTESA 448

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEK 894
           +M +PE ++  L  L ++GIS  LDDFGT  S LS L ++P   VK + S +   G++  
Sbjct: 449 MMHDPEYAQRCLRELNQLGISFALDDFGTGFSSLSNLQHLPISLVKIDKSFVQELGNSAD 508

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+R+II +A +++ +++A+ +  E  ++ L +  CD IQ  + A P+ +  +++ L 
Sbjct: 509 AEHIIRAIISLAHSLQISVVAEGVETEGQLEFLRQQHCDEIQGYYYARPMPWADLVQFLN 568

Query: 955 ER 956
           +R
Sbjct: 569 KR 570


>gi|70732152|ref|YP_261908.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68346451|gb|AAY94057.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 683

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 211/446 (47%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +L  A  D LTG+PNRQ    +L  IL  +      R  V+ + +
Sbjct: 231 SIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGRLQR-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IN+      GD +L++L  R+         LARL G++F ++        + A+ 
Sbjct: 290 DDFKGINEQFSYQTGDQLLLALADRLRGHSGRLGALARLGGDQFALVQADIEQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   +     L  +EI + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEATFALDHQEIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKTRSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+   + +LVY P I   D  +VG+EALI+W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALARDQFFLVYQPQISYRDHRVVGVEALIRWQHPEHGL 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+   I AI  ++L++  R +  W D      + + +N+++  L   EL 
Sbjct: 470 VPPDLFIPLAEQNGTIIAIGEWVLDQACRQLREWHDM-GFSDLRMAVNLSTVQLHHAELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLLQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIS 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 EGCHEGQGYHYSKPLPARELGAYLKQ 674


>gi|332307470|ref|YP_004435321.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174799|gb|AEE24053.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 696

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 114/445 (25%), Positives = 232/445 (52%), Gaps = 19/445 (4%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LT +PNR S  +++T  ++ +  DD     +M +D+D++K IND LG  
Sbjct: 254 EQLYERANFDALTQLPNRHSLTEKITQAIEKA-RDDKSNLALMFLDLDRFKVINDSLGHF 312

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +LV + ++I   L   D++ R  G+ F I++ + N+   +   A  +  ++++P+ 
Sbjct: 313 VGDRLLVEVAKKIQHKLTKNDVVGRWGGDEFVIVIQNPNDLNSVEGLAKEIISALSLPLI 372

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
               ++ ++ SIG A +      +S +LK+A+ +MY AK  G      F          R
Sbjct: 373 AAGHQLHISTSIGIACFPQDGEDASSLLKHADTSMYKAKELGPGQFRFFDQDMLNASVWR 432

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  L  A    +  LVY P + + +++ VGLEALI+W++ +   +S + F+ IAE++
Sbjct: 433 LELETQLRQASAQQQFTLVYQPKVEVNNQKPVGLEALIRWNNGQ-ALVSPAVFLPIAEDI 491

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++++I++++L++  +    W+       + + +N+ +  L+     E ++  +++T  +
Sbjct: 492 GLMESISVWVLKQACQQNADWQRAGIEI-VPVAVNLPASFLMGPHCLESIEGALTQTGLA 550

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +++  +E+  + + E    +L  ++ +G+ + +DDFGT  S +SYL  +P +T+K +
Sbjct: 551 GQFLEIEITENTFITSTELVVEVLSAIQALGVKIAIDDFGTGYSSMSYLRDLPINTLKID 610

Query: 885 GSLMTGSTE--------------KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           G  +    E              +   I+RSII + K++  + +A+ +  E  + +L  M
Sbjct: 611 GIFINDLVEGTHSEIPHSDAHLLRDEGIVRSIITLGKSLGFSTVAECVEHEYQVTKLKSM 670

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD IQ  + + PL  + I   L+ 
Sbjct: 671 GCDVIQGYYFSKPLPVDEIEIYLRN 695


>gi|217418926|ref|ZP_03450433.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217398230|gb|EEC38245.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 688

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 202/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR++  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|88797161|ref|ZP_01112751.1| PAS:GGDEF [Reinekea sp. MED297]
 gi|88780030|gb|EAR11215.1| PAS:GGDEF [Reinekea sp. MED297]
          Length = 876

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/613 (19%), Positives = 240/613 (39%), Gaps = 18/613 (2%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQ 407
           +        + +               + I +     + +         +  +    +  
Sbjct: 273 VGIAASSNRVDQLTTRTRWVTRSSATALWIGLSFLLGLQRVNFRLREQQRKALEKSEQEL 332

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           + A        W      +R+  +  +  +L +    +   +      +H + R      
Sbjct: 333 TAAQRLGKMGSWV-STDGERLALSTPLQELLNINGEEI--SLDALFDRLHPDQRMLHIEQ 389

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + SF+   + RL  E R++  +  + W   RI   S++        GI  +I   ++  E
Sbjct: 390 IHSFMAGHQDRLNLEHRLKTGE-TYQWFDHRIARTSDNQ-----VTGILRNIQTIREREE 443

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      D+LTG  NR  F       L L          + +I+ID ++ +N+  G +V
Sbjct: 444 QVTKLESFDSLTGAANRHYFRQIAEQNLALCERR-RTTFVLALINIDDFRTVNESHGQSV 502

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L  +T R+    +  D +ARLSG+ F + L+   N+ +       + + +  P  +
Sbjct: 503 GDELLKQITLRLHNHSRKSDTIARLSGDTFAMALVDIGNNRQSVFVIEQIMRRLKDPYMI 562

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705
            + ++    ++G A +         +L+ +E A+  AK     H   +          R 
Sbjct: 563 AD-DLYPQFTLGIAMYPDDATDYDTLLRMSESALSAAKKEARGHYRYYSAELSEQTDRRQ 621

Query: 706 MIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            I   L  A+ N  L++V+ P +          +E L++W  P  G +S  EF+ IAE  
Sbjct: 622 RILASLPAAIANDYLHVVFQPRVDSQQPHRSTSMEVLVRWHDPVLGVVSPGEFIPIAEHT 681

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I  +++    R +  +        + + IN++ + L D  L + ++ L+      
Sbjct: 682 SLIADIGHWVMRETFRTMDQYGHLLP-EGLTVSINLSPRQLEDRTLPDAIRHLLQDYNVL 740

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S+ +L  +E  +    E  R  +  L  +G    LDDFGT  S L  L  +P   +K +
Sbjct: 741 ASQFELEITEHSIAEQSEDIRDNMRELNDLGFRFALDDFGTGYSNLGILQSLPLHVLKID 800

Query: 885 GSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +        +  ++R+II M   +   ++A+ +     ++ LT + C+ +Q  +   
Sbjct: 801 MSFIRAIGTTDRSDELVRAIINMGHTLGLRLVAEGVESAAQVQFLTELDCEELQGFYFYK 860

Query: 943 PLGFNSILKLLKE 955
           P   + ++  LK 
Sbjct: 861 PQSIDELIPQLKS 873


>gi|310658140|ref|YP_003935861.1| signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (ggdef) and domain
           (eal) [Clostridium sticklandii DSM 519]
 gi|308824918|emb|CBH20956.1| putative Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium sticklandii]
          Length = 779

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 211/437 (48%), Gaps = 9/437 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I++ K + + +   + +D LTG+ NR+ FL+ L  +++ ++     +  ++ +D+D++K 
Sbjct: 335 ISDLKLANKALEEISNKDGLTGLYNRRYFLNNLDELINDASCS---KFALLYMDMDRFKA 391

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G  VGD VL SL++R     K    + R+ G+ F +I+ +  ++  + D   ++ 
Sbjct: 392 INDTHGHEVGDQVLYSLSKRFTNHCKENCTVYRVGGDEFAVIVKNYEDTSYLYDIIDSLL 451

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K    PI +      V+ SIG + +         +LK A++AMY AK    N    F  S
Sbjct: 452 KISEFPIKIPPYVFNVSLSIGISKYPKDAKDRGTLLKYADIAMYEAKISHNNQKYFFFDS 511

Query: 699 S---FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   +  ++  L  +  + E  L Y P  R  D ++VG+EAL++W HP+ G IS +
Sbjct: 512 DLSEKVQKKHSLEVMLKNSNFDKEFKLYYQPQYRTSDNKLVGMEALLRWIHPEEGFISPA 571

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ IAEE  +I ++  +++ +      +W  +     + + INI+   + +++    ++
Sbjct: 572 DFIPIAEETGIIFSLGEWVINQAMCQAKAWNQKY-NMDLQVGINISPLQIENSDFVNRIR 630

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I      P  I +  +E V M +      +   L  IGIS+++DDFGT  S LSY+  
Sbjct: 631 QKIHDEDIKPEWIDIEITEGVAMSSQVSMEEIFSGLANIGISISIDDFGTGYSSLSYIKR 690

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              D +K    L+    E +    I+++II MA+ +    IA+ +     ++ L  + CD
Sbjct: 691 FDIDRLKIAKELIDNIAEDKNTLLIVKAIIMMARGMGLKTIAEGVEDSNQLEILKVLECD 750

Query: 934 YIQDSHVASPLGFNSIL 950
            IQ      P+      
Sbjct: 751 EIQGYIFGRPVPPEIFE 767


>gi|78357490|ref|YP_388939.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219895|gb|ABB39244.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 865

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 126/573 (21%), Positives = 244/573 (42%), Gaps = 8/573 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  V         +     R       +G  +          +     A +  + +  M
Sbjct: 283 IMATVERIHQSETALRESETRFRAVFDHAGLGIVLLTPQGTVKSVNKGAADLASIPAAEM 342

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G   ++  ++  +D         +  G     L     +R       W  + +  + + 
Sbjct: 343 LG--LHYSDFLCADDVTVADRFFHALQGGADEVLTMTSAIRRRHAPPIWCKLTVSRVLDE 400

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G +   I    D+T+ K+  E +   A+ D LTG+PNR  FLDRL +  + +  + +  
Sbjct: 401 GGSLRFIIVQIEDVTDHKREDERLTHMAYHDVLTGLPNRALFLDRLQSAFNRAQRNASYS 460

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K +ND +G   GD +L     R+G  L+  D LARL G+ F ++L    
Sbjct: 461 FAVLYMDMDGFKDVNDSMGHDAGDALLGMFAERVGNCLRNVDTLARLGGDEFAVLLDDVP 520

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
             L++      + ++++ P  L  REI    SIG            ++L+ A+ AMY AK
Sbjct: 521 EILQVTHVIERITEAVSSPFMLRGREIRCGVSIGAVLRGQECSGCGDLLRQADSAMYKAK 580

Query: 686 HRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG     +     ++        +++L  A+++ +L L + P++ L    +  +EAL++
Sbjct: 581 RRGSNRYVIAGSSDAAAARVMRKGEQELVTALDSGQLELFFQPVVSLQTGRMDAVEALVR 640

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR-DII-SWRDQANMPPIFILINIA 801
           W HP+ G ++   F+ +AE   +  A++  +L   AR  +    ++      + + +N+ 
Sbjct: 641 WHHPERGLLAPGAFLPLAEHAGLQAALDAHVLRLAARAQLAMQEQEARGAAVLSVHVNML 700

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S+ L   E+   +  ++ +   +  R      E++++         L RLR  GI L LD
Sbjct: 701 SETLRRPEMPGVLLGVLQEEGAAADRFIFELVENLLVNAAPAVAEGLWRLRDAGIRLALD 760

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
            FG+  S L+ L   P   +K +GS +  S     A  I+RS   +A       +A+ + 
Sbjct: 761 GFGSGYSSLAMLRRYPLSLLKVDGSFVRASDADMAARGIVRSARTLASGFSMKAVAEGVE 820

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                + L  +G    Q  + A+P+  + +L++
Sbjct: 821 LPEHAELLRELGYSSAQGMYFAAPMRLSRLLRM 853


>gi|237799576|ref|ZP_04588037.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022432|gb|EGI02489.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 683

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 213/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 298 QFSYQSGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFVVGDQQIQLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I  +D  +VG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYVDHRVVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I  +  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIVLGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDITTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDKSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPARELLAYLKQ 674


>gi|154247068|ref|YP_001418026.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
 gi|154161153|gb|ABS68369.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
          Length = 764

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 210/462 (45%), Gaps = 16/462 (3%)

Query: 495 MIIRIRPMSNSNGDILRYI-----GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
           +  R  P+  ++G +   I     G+A  I  ++         A  D LTG+ NR +F +
Sbjct: 299 LWQRAMPLIIASGLLCCAIALITYGVARLIRGERAFAAAEHALARVDPLTGLANRLAFTE 358

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L  +L +       R ++  +D+D +K +ND LG   GD +L    +RI   L   D  
Sbjct: 359 SLEALLAMPGATP--RFSLHCVDLDDFKAVNDTLGHEAGDLLLTRFAQRIIGRLAPGDTA 416

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ FGI+ +  +   +   FA  +  +   P ++    +T   SIG A       T
Sbjct: 417 ARLGGDEFGILRLGSSGDREALAFAQGIIDAFQEPFDIGHHRVTGGCSIGVALSPVDGTT 476

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPI 727
           ++++L NA+LA+Y AK  G     +F      S   R  ++ DL  A       L Y PI
Sbjct: 477 ATQLLHNADLALYRAKSDGRCIARAFAAEMEASASARRTLEADLHAAWRERHFVLAYQPI 536

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  + G EAL +W H + G +    F+ +AEE  +I  +  ++L    R    W  
Sbjct: 537 FEAASGRLAGFEALARWPHSERGLVPPETFISVAEETGLIVPLGAWVLREACRVAAEWP- 595

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
               P +F+ +N++    L  +  + ++A + ++     R++L  +ES ++      R  
Sbjct: 596 ----PNLFVSVNLSPLQFLGAQTHQQVRAALEESGLPARRLELEITESSLLKQGPTVRTT 651

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +L   GI++ LDDFGT  S L+YL  +    +K + S +     +   +AI+R+I+ +
Sbjct: 652 LEQLADEGITVALDDFGTGYSSLAYLRTLNIGRIKVDRSFVHDVAQSPHSLAIVRAIVGL 711

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           A+ +  +  A+ I  E   + L   GC ++Q   +  P    
Sbjct: 712 ARTLSLSCTAEGIETEAQRRILADEGCTHLQGFFLGRPTTAE 753


>gi|13473973|ref|NP_105541.1| hypothetical protein mlr4740 [Mesorhizobium loti MAFF303099]
 gi|14024724|dbj|BAB51327.1| mlr4740 [Mesorhizobium loti MAFF303099]
          Length = 449

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/444 (24%), Positives = 213/444 (47%), Gaps = 10/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       AF D LTG+ N + F D++  ++   A D     TV ++D+D +K IND+ 
Sbjct: 9   QANRESTDLAFTDPLTGLGNHRRFFDKVDRLISDRADDP-APFTVGILDLDGFKPINDLF 67

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GDD+L+ +  R+   +     + R+  + F  +     +    A+ +  + + ++ 
Sbjct: 68  GHKAGDDILIQVAMRLRASMDGHSTVCRIGADEFAFLYPLVFSEEAAAEKSRMLIEILSA 127

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P ++ ER   ++AS+G + ++S   T+  ++  AE A+YHAK  G   V  +      + 
Sbjct: 128 PYDVGERTARLSASVGCSLFSSGDETTEILINKAETALYHAKRSGRGRVVVYTREMEEAA 187

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    I++ L  AV   E+   + PI+ L     +G E L +W     G +  + F+ IA
Sbjct: 188 KRVTRIEQALRRAVSAGEVEPHFQPIVDLTTRRTIGFETLARWTDRDLGAVPPTVFIPIA 247

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  ++  +L +      SW        +F+  N++   L+D      + A++ +T
Sbjct: 248 EERGIIGPLSQLVLRKATEAARSWPS-----DLFLSFNLSPSQLVDQNTGLHILAILDRT 302

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P R+++  +E+ +M +P  +  ++  LR++GI ++LDDFGT  S L  L    FD +
Sbjct: 303 GFDPRRLEIEITETGLMNDPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFDKL 362

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + ++   + R    I+R+I+ M + +   ++A+ I  E     L + GC   Q   
Sbjct: 363 KIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEGIEEEAQADRLVQFGCAGGQGYL 422

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
              P+  ++ L  L++ F      
Sbjct: 423 FGKPVDADATLGYLRDSFRGALRA 446


>gi|282861272|ref|ZP_06270337.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
 gi|282563930|gb|EFB69467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces sp. ACTE]
          Length = 941

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 149/757 (19%), Positives = 302/757 (39%), Gaps = 42/757 (5%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RW 278
            A A + L Y  +D   +S ++ L    + + R+    A++   +  L   L  +   R 
Sbjct: 179 VARAALTLAYPLLDIVLVSMVLALHFRRISVNRSAVNTAIAGLALTVLCDALFTSPLLRS 238

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
               G +  +G    ++L   + +        A  T  +                     
Sbjct: 239 AYHSGQLLDAGWFAGSLLLAYAPWGARRAPDNAVGTGRAPRGTSRPIAGSLAA------- 291

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L P           L+  +  R  + ++       ++ +V          +L     +Q
Sbjct: 292 -LTPYLAAAVCTLGILYSVVDGRRPDRVVVVTGCAVVLALV----VRQAIMLLDNIALTQ 346

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +          V GS D++   +        +P  A + G A+  + G        IH 
Sbjct: 347 ELAEKENHFRSLVQGSSDVIMIAEPTGVLRYVSPAAAGVYGRAAEDLMGT--QLPAIIHP 404

Query: 459 NDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +D       +  F+          + E R R+   ++  +   +             +  
Sbjct: 405 DDLGPVVHEVRRFLAAPPREEPTTRIECRFRSGTGEWLHVESTVNRHQG------GLLLN 458

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           + D+TE+ +  E +  NA  D LT +PNR  F  R+   L       +    V+ ID+D 
Sbjct: 459 SRDVTERVRLQEQLQHNAEHDPLTDLPNRALFTARVAQALG-GRRTGDAGTAVLFIDLDG 517

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD--- 632
           +K +ND +G   GD++LV   RR+ + ++  D  ARL G+ F  +++ +    + A    
Sbjct: 518 FKAVNDTIGHQAGDELLVQAARRLQDSVRAWDTAARLGGDEFAALIVGDGTGDQAAREYQ 577

Query: 633 ---FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +R +++ P  +  RE+ V ASIG A +    IT  ++++NA+LAMY AK  G 
Sbjct: 578 VHEIAERLRLTLSQPYRIGGREVRVAASIGVA-FAEPGITPKDLMRNADLAMYRAKAGGK 636

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           + VE +             +   L  AV + E  L++ P++ L    +  + A  +W   
Sbjct: 637 DRVELYAPQMQAEVVRRSELAARLRTAVSDGEFALLHQPVVHLASGTVAAVAAQARWRSA 696

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +    + +EF+ +A +      +  ++LE             +  P+ + + +++  LLD
Sbjct: 697 QGILFTPAEFLRVAGDSDRAAELGGWLLEEAVEQAADRARAGH--PVAVSVRVSAGRLLD 754

Query: 808 NELCE-GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             L    +++L+++       + +  +++    + +     L  LR++G+ + LD FG  
Sbjct: 755 RALPHGSVESLLTRHGLPSGALMIEVADNDPRVSFDDLEQRLVALRRLGVRIALDGFGNG 814

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + ++ L  +P D +K + +L+ G  E      I   ++ +A ++    +A  + G   +
Sbjct: 815 YAAVNALRRLPVDVLKLDRNLVEGVVESARLHKITSGLLRIACDLGMQSVADGVDGPEQV 874

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPLV 960
           + L  MGC + Q    + P+    + + L++ RFP+ 
Sbjct: 875 RALRAMGCTHGQGMAFSGPVDEYRLRRTLVRGRFPVA 911


>gi|289670565|ref|ZP_06491640.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 478

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 205/421 (48%), Gaps = 7/421 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR    + L   ++ +  D   R  VM+I++D +K IND  G  +GD +LV 
Sbjct: 47  HDPLTRLPNRVLLHEHLLQNIERAQRDGQ-RFAVMLINLDGFKVINDGYGHQLGDRLLVV 105

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+    +    LARL  + F  ++    +    A  A  + + +A+P  +   E+ +
Sbjct: 106 VAERLNAHRRANGSLARLGADEFV-LVADIADPEDAAALAAHVVQDLAVPFLISNHELRL 164

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           ++S G A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L 
Sbjct: 165 SSSSGIALYPEDANSGPQLLTHADAAMNHAKHAGRNRYSFFERSMTATTRDRLQLLQELP 224

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  +  
Sbjct: 225 RALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLGS 284

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L +  R +  WR   +     + +N+++  L    L + +   +S+   +P ++ L  
Sbjct: 285 WVLRQACRQMRDWRQAGHG-DWRVAVNLSALQLASPSLLDEVATTLSEFTLAPGQLTLEI 343

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +E++ M + E     L +L  +G+ + +DDFGT  S L YL  +P   +K + S +    
Sbjct: 344 TETMAMRDAEACLRTLVQLNALGVHIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMD 403

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           S+ + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     +
Sbjct: 404 SSAEDIAIVAAVVALAHTMRLQVVAEGVETTAQRNTLERLGCDQLQGYLLGRPMDAERFI 463

Query: 951 K 951
            
Sbjct: 464 A 464


>gi|237809578|ref|YP_002894018.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
 gi|237501839|gb|ACQ94432.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Tolumonas auensis DSM 9187]
          Length = 930

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/608 (21%), Positives = 262/608 (43%), Gaps = 24/608 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
              ND  QP         + +I   V   +         +     +       +   +  
Sbjct: 325 LAQNDYTQPLRQDDAQDEISMISRVVNNLLTTKLETHDALEEVENKLQAVYENARQPMLI 384

Query: 421 WDIVRDRVTTTPDIATILGLAS-GSMHGPIRN---WLPYIHINDRDNFRTILDSFVGYRR 476
               +  ++     AT+LG  S G + G   +   +       D   F   + +      
Sbjct: 385 TH-EKRVLSANQAAATMLGNDSMGDLIGRHLDNLLYTAGTPSADCARFYQQIAA------ 437

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
               +E+ +     +     + I P+ +  G     I + NDI+E++     I    F D
Sbjct: 438 KEYNFEWNIAGHSGRLVPCELHITPI-DHQGRQALLISM-NDISERRLQETKIRQLVFND 495

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LTG+ NR + + R+  +L      DN R  ++ I++ +++ IND  G  +GD V+ ++ 
Sbjct: 496 SLTGLSNRYALIQRMQPVLK--QLTDNHRFALLYINLTRFRAINDTFGHEIGDGVIKTIA 553

Query: 597 RRIGE--LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            R+ +      P  LAR+ G+ F I +       +    +  ++  +  P+ +    + +
Sbjct: 554 LRLEQEYAASGPATLARIGGDEFVIFIPQIATVYQPVRLSHKIQHRLLQPLIIDGVSLEI 613

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + +I          T  ++L+ A+ AM  A  K      V S R+     + + I+ DL 
Sbjct: 614 STTISVIIGGKEYKTVEDVLRCADFAMSKASKKQSKRIQVFSHRMYQEALETLAIQRDLP 673

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ N ++  V+ PI+     EIVG EAL +W H + G IS   F+ +AEE  +I  +  
Sbjct: 674 SAIRNGQIKPVFQPIVCCDSGEIVGFEALARWQHKERGAISPCRFIPMAEESNLIVELGE 733

Query: 773 FMLERIAR---DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            +L +  +    +   R     P + + +N ++       L + + + + KT  SP ++ 
Sbjct: 734 QVLTQACQFIQHLNQMRSDQQKPALSVHVNFSAHHFSSTALLDNLVSTLEKTKLSPEQLV 793

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES+++  P  S   + +++++G++L LDDFGT  S L+ L   P D VK + S + 
Sbjct: 794 IEITESMLIERPAESVKRMEQIKQLGVNLALDDFGTGYSALNTLCQYPLDVVKLDRSFVL 853

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              + +   A++R+II MAK++   ++A+ +     + ++  +G   IQ  +   P+   
Sbjct: 854 RLMDGQQGEALVRAIINMAKDLNLPMVAEGVETYEQMLKIKALGVSEIQGFYYYRPMPAE 913

Query: 948 SILKLLKE 955
            +  L ++
Sbjct: 914 EVFALFEK 921


>gi|74316170|ref|YP_313910.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055665|gb|AAZ96105.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Thiobacillus
           denitrificans ATCC 25259]
          Length = 928

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/615 (19%), Positives = 249/615 (40%), Gaps = 33/615 (5%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
                     +      L      + + I        L   Y  +    +  R    +  
Sbjct: 324 ASGVYQGIRASLHSIDDLKATEANLRLAIKELRTAETLQRTYL-EETEQERARLVSLLSA 382

Query: 414 SGDIVWDWDIVRDRVTTTPDIATIL---------GLASGSMHGPIRNWLPYIHINDRDNF 464
               +         +   P    +          GL    +       L      + D+F
Sbjct: 383 MNLGILFVAPDGRVIYHNPVFGRMWMIDDSAELIGLPVHEVLTRSAATLA-----EPDHF 437

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L + +        YE ++   D +    +    P+ +  G  + ++ I  D+T +++
Sbjct: 438 SRHLRAVLETHESSESYEIQMT--DGRVITELD--YPVRDREGRFIGHLWIYEDVTRERQ 493

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E ++  A +D LTG+ NR  F   L   +  S     ++  VM  D+D++K IND  G
Sbjct: 494 TAERLVYLAERDALTGLYNRHRFQQELARTMLDSDR-QKMQCAVMFFDLDEFKTINDSYG 552

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L+ +   I  L++  ++LARL G+ F I+L +  ++   A     +     +P
Sbjct: 553 HRAGDALLIRVAGEISALVRRNEVLARLGGDEFAILLPALQDNEAEALADRVVHAIAQIP 612

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR----VSSF 700
                + + VT S+G A + +  + + +++  A++AMY AK  G N    FR      S 
Sbjct: 613 FRFEGQSLRVTTSVGIAYYPAHAVDADDLVARADIAMYQAKDAGKNTWRVFRADSAADSE 672

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW--GNISSSEFM 758
              R+   E +  A++     L +  + R  D  +  LEAL++          I    F+
Sbjct: 673 MRTRLSWGERISNALDKGLFQLHFQGVYRADDGALSHLEALVRMTDEHRPDQLIMPVHFI 732

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+   I  I+ +++    + + +           I +N++ + L +  L + +   +
Sbjct: 733 QRAEKSGRILDIDRWVVHETIQLLAANPCIP-----SIAVNLSGRSLSEPSLPQTIGNGL 787

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +PSR+    +E+  + + + ++ ++  LR++G  + LDDFG   +  +YL ++  
Sbjct: 788 REAGVNPSRLIFEITETAAVADLQDAQRMIEALRQLGCGVCLDDFGVGFASFAYLKHLDV 847

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K +G  +            +++++ +A  +  +++A+ +     +  L + G D +Q
Sbjct: 848 DTIKIDGIFIRDLPNDPDNQVFVQAMVSVALGLGKSVVAEYVEDGATLALLRQFGVDLVQ 907

Query: 937 DSHVASPLGFNSILK 951
             ++  P+  +  L+
Sbjct: 908 GYYLDRPVAAHPALR 922



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 16/229 (6%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA------- 370
           + L  +   I      Y R  L I A   + +  + L ++    +    +          
Sbjct: 126 VALVLSGAFIAEARARYVRESLSI-ALAALLVTGVLLALSTGGVIRRFEVLTRASRRMAQ 184

Query: 371 ------LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                 L G     +  +  T  +   +  +       +  R       + D+ +     
Sbjct: 185 GDLDVKLTGEGEDEIGQLIGTFNRMAESVRFNIDRARENEARFHAIADYTHDVEFWLSPE 244

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +   P +  +LG + G     +R     IH +DR      L   +    G+  Y  R
Sbjct: 245 GKLLWINPSVERMLGYSVGECLDQMRFPADIIHPDDRGAAEVQLRLALRGTSGQ-GYAMR 303

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   D    W+ +  +P+ +++G         + I + K + E  L  A
Sbjct: 304 ICRKDGGHFWVAVNWQPIHDASGVYQGIRASLHSIDDLK-ATEANLRLA 351


>gi|260462930|ref|ZP_05811134.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031324|gb|EEW32596.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 737

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 215/451 (47%), Gaps = 12/451 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G I+    +     +  +S + I   A  D LT +PNR  F DRL   L    +    + 
Sbjct: 284 GVIVALRALRRRTLKLIESEDRIFQLAHNDLLTALPNRGQFNDRLADALSRLPSTGE-QL 342

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ +D+D++K++ND  G   GD++L     R+  L    D +ARL G+ F II  S   
Sbjct: 343 AVLYLDLDRFKQVNDTFGHPAGDELLREFADRLRRLTTEADTVARLGGDEFIIIKRSVAG 402

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++      + +S   P  +   ++ V  S+G A      +   E+++ A++A+YHAK 
Sbjct: 403 EDEVRTLCEHLLESARRPFQVAGAQVFVGVSVGAAFAPRDGLEWVELVRKADVALYHAKA 462

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQ 743
           RG +    F     ++  +   +++DL  A++   ++ + Y P+       + G+EAL +
Sbjct: 463 RGRSSYAFFATEMDQTLAMRKGLEQDLRSALQAPGQIQVYYQPLYTADTNRMAGVEALAR 522

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W H + G ++   F+ +AEE+ +++ +   +L +   D + W  +       + +N+++ 
Sbjct: 523 WSHVERGWVAPDLFVPLAEEMGLVEQLGELVLRQACLDAVHWPIE------TLAVNVSAL 576

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L +      + +++ +T   P R++L  +ES +  +    +  +  LR IG+   LDDF
Sbjct: 577 QLNNPSFAMKVTSILLETQMDPRRLELEVTESTLSQHRTECQQNVEALRSIGVRFALDDF 636

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L  L  +  D +K + S +   G +    AI+++II +A+    +  A+ +  +
Sbjct: 637 GTGFSSLGRLQTLEVDRIKIDRSFVQGFGHSNGDEAIVQAIIDLARATGLSTTAEGVETD 696

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                L ++GCD +Q   ++ P+    I  L
Sbjct: 697 SQRNFLRKLGCDQLQGFLLSRPVPKQEIENL 727


>gi|253996336|ref|YP_003048400.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983015|gb|ACT47873.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylotenera mobilis JLW8]
          Length = 728

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/533 (23%), Positives = 226/533 (42%), Gaps = 17/533 (3%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVR 486
                A   G +     G        +    R  F+ I++  +         +  E    
Sbjct: 198 WNNAAAQSHGYSLEEGIGKPIE--QLMPARARSIFQEIINKAISAGSLNDLVIPSEINGL 255

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D     +   +    ++    +++  +  DIT Q+     +   A  D LTG+ NR S
Sbjct: 256 RKDGTQFILGFSLFSWKDAGN--IKFEAVLKDITAQRLEEIELHQQANIDPLTGLVNRGS 313

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   + + +   +       TV++ID+D +K +ND LG AVGD +L  ++ R+ +L+   
Sbjct: 314 FYRAVESAMITPS-----PMTVLMIDLDGFKDVNDTLGDAVGDSILKEVSNRLLKLVNTV 368

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            + AR+ G+ F I+     N       A A   +IAMPI++  +E+ V AS G A     
Sbjct: 369 GVAARIGGDEFAIMWPQMTNPGLAIQLAEAAVATIAMPISVNGQEVRVAASCGVAIAPDQ 428

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVY 724
              + E++ NA+LA++ AK  G      +  +      V      +L  AV+  E  L+Y
Sbjct: 429 AHEALELISNADLALFKAKSIGRGQAFLYVTALRLDAVVRRLYALELHRAVDEGEFLLLY 488

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P + L+  EI G EAL++W HP+ G +S   F+   E   +   +  ++L+     +  
Sbjct: 489 QPQVDLITGEITGAEALLRWHHPERGILSPITFLPALERGTLAATVGTWVLDEACAQVAY 548

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           WR     P + + +N+        ++   +   + +    P  ++L  +E++   N +  
Sbjct: 549 WRR-NGAPNMRMGVNLFGAQFHVGDIVTEVIETLDRHGLPPEALELEVTENIAPDNDDVV 607

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              L +L   G+ + +DDFGT  + LS L   P   +K + S + G    E+  +++R+ 
Sbjct: 608 LNSLRQLHNYGVGIAMDDFGTGYASLSLLKTYPLTRIKIDQSFVHGMLDQEQDASVIRAT 667

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +A++ +   IA+ I  E     L    C   Q      P+       L++ 
Sbjct: 668 LDIARSFKLKTIAEGIETENQRHYLLEKKCMEGQGYLFGKPIPAAQFSALIEA 720


>gi|108798716|ref|YP_638913.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. MCS]
 gi|119867834|ref|YP_937786.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126434319|ref|YP_001070010.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
 gi|108769135|gb|ABG07857.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. MCS]
 gi|119693923|gb|ABL90996.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126234119|gb|ABN97519.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
          Length = 601

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 214/461 (46%), Gaps = 9/461 (1%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +    +     +   +  +  + E +   A  D+LTG+ NR++ L  L   L        
Sbjct: 142 DELNALTAIASLFAQVQARIAAEERLRYLADHDDLTGLHNRRALLRHLDDRLAAGRPGP- 200

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+  D+D+ K +ND LG   GD  +  L  R+ +       +ARL G+ F ++  +
Sbjct: 201 --VAVLFFDLDRLKAVNDYLGHIAGDWFIRVLAERLQQ-GDEKKFIARLGGDEFVVVPAA 257

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +      A  ++  +   +++    +T T SIG A  T  + T+S++L  A+ A+  
Sbjct: 258 PTTADDAETLAHRLQAVLRERVSIDGELLTRTISIGVAVGTPGRDTTSDLLSRADQAVLS 317

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GGN +  F     +   +   I+  L   +++  L L Y P + +   EI+  EAL
Sbjct: 318 AKGEGGNSISVFSEQMSQEITLRNDIELHLQSVIDSGALVLHYLPEVDIRTGEILATEAL 377

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S   F+ +AE + +   +  ++L     +   WR       I + +N++
Sbjct: 378 VRWQHPTRGLLSPDRFIGVAESINLAGELGRWVLRNACAEFARWRAAGVGDRIVLRVNVS 437

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L+     E +  +++        + L  +ESVV+ + + +R+ L  L++ G+ + +D
Sbjct: 438 PVQLVTEGFVESVADVMADFGLERGSVCLEITESVVVQDIDTTRVTLAGLKEAGVKVAID 497

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S+LS L  +P DT+K + S +         +AI+R+II +A      ++A+ + 
Sbjct: 498 DFGTGYSVLSLLKSLPVDTLKIDKSFVRDLGVNAGDLAIVRAIIALAAAFGLELVAEGVE 557

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
            EI  + L   GC   Q   ++ P+    + +LL E R P+
Sbjct: 558 TEIAAQTLLDHGCHRAQGFLLSRPVPGEQMERLLAEGRIPV 598


>gi|330966507|gb|EGH66767.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 763

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 225/442 (50%), Gaps = 8/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++  ++   +   A  D LT + NR+ F       L    T       VM +DID +K+
Sbjct: 276 LSQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLLE-HTHSKGMLAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S  +  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIAERIRSATRVQDVVARFGGDEF-CILLSIPDYEEARHLAHRVM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +   I L  R + +T SIG A +     T  E+LK+A+LA+Y +K  G N V  F  +
Sbjct: 394 DKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKGNGRNRVNFFSPA 453

Query: 699 SFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 + +  +  L     E   L + Y PI+ +    +  LEAL++W+HP+ G ++  
Sbjct: 454 LKTKASLELHLEEELRNALREETGLQVYYQPIVDMRTGHVAKLEALVRWNHPQHGLLAPV 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++ ++L R   D+ + R++     + I +N ++  L  +EL E ++
Sbjct: 514 RFIGIAEANGLIAELDNWVLRRACHDLATLREEGLEQ-LIITVNCSALTLGRDELVEEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL++DDFGT  S L+YL  
Sbjct: 573 QALADADATPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSIDDFGTGYSSLAYLKR 632

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P DT+K + S +     + + + I+++II MA  +   ++ + +     +K L + G D
Sbjct: 633 LPLDTLKIDRSFIIDIPESPQDMEIVQAIIIMAHTLHLKVVTEGVETPAQLKLLNQFGSD 692

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y+Q    + P     IL L K+
Sbjct: 693 YVQGYLFSRPQPLERILPLAKQ 714


>gi|158336465|ref|YP_001517639.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158306706|gb|ABW28323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 964

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/597 (21%), Positives = 254/597 (42%), Gaps = 20/597 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            ++ G+    ++I   +++ +       + +  +  R         +I W+ D   +   
Sbjct: 377 WMLTGVFSSALVIIALLMEVLRRRAQVEKTLRENERRYRDLAEVGANIFWELDENLNLSY 436

Query: 430 TTPDIATILGLASGSMHGPIR-NWLPYIHINDR--DNFRTILDSFVGYRRGRLQYEFRVR 486
            +     + G    ++   I  + L  +  ++   +     L++ + +RR    + F  +
Sbjct: 437 VSD----LQGHQPSAISSQIIGSPLTDVFADEEIFEFNTKRLETILHWRRPIRDFIFFAK 492

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +     +  +P+ +       Y GI  DITE+    + I   A  D+LT + NR  
Sbjct: 493 EDNQEMRIFKLNGKPIVDDAQLFQGYRGIQRDITEEYFLTKKIAYQAAYDSLTNLLNRSE 552

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F  RL   ++L+  DD  +  +  +D+D++K +ND  G  VGD +L  L   + + L+  
Sbjct: 553 FDSRLQESVNLAKEDD-TQYVLCYLDLDQFKLVNDTAGHIVGDQLLTDLAHLLKQKLRPD 611

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D+L RL G+ FG+++         A     + +         + +  V  S+G  ++  +
Sbjct: 612 DVLGRLGGDEFGLLMQDCTLEEAQAFCEKLVTQVQNFRFQWRDSQFRVGVSVGIVAFADA 671

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYL 722
             ++ E+L  A+LA Y AK  G   V     +    D   ++     D+  A+E   L+L
Sbjct: 672 SYSAEELLSRADLACYKAKDSGRGRVYVANQNDRELDHFQLQMAHIADIPQAIEEERLFL 731

Query: 723 VYHPIIRLMDEE--IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           V  PI  +          E L++    K   I    F+  AE   +I  I+ ++LE    
Sbjct: 732 VKQPIQSIRQPTSLHRHYEILLRLRDGKNNIIGPGLFIPAAERYGVIALIDHWVLENTLD 791

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                  Q  +    + IN++   + D+     + ALI+++   PS I +  +E+  +  
Sbjct: 792 QY----YQCGLEDEMVSINLSGASINDDRATAKVIALITQSSVPPSNICIEITETATIAQ 847

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAI 898
            +++   +  L+ IG+   LDDFG+  S LSYL  +P D +K +GSL+      E    I
Sbjct: 848 LDQALRFIESLKDIGVKFALDDFGSGVSSLSYLKSLPVDYLKIDGSLIKNIAVVESDREI 907

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  I  +A       IA+ +  E  +++L  +G DY Q   +  P    ++ +++  
Sbjct: 908 IYLINELAHKRGMKTIAEFVENEQILEQLRIIGVDYAQGYGIGKPEPLMALNQVMAS 964


>gi|77359284|ref|YP_338859.1| hypothetical protein PSHAa0317 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874195|emb|CAI85416.1| putative orphan protein ; putative sensory-box domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 843

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/569 (20%), Positives = 236/569 (41%), Gaps = 22/569 (3%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + +FS  +R  L +     +V + D         P    + G    S             
Sbjct: 277 RDLFSAHQRILLHL---NTVVLELDQQGLIRFINPAWEALSGFGVKSTLQQQLTNFCI-- 331

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              +   +  +D  +     + Q E R++  +    W+  R++ + NS+ +        +
Sbjct: 332 AECQVKLQATIDDILCGGEYKQQVEIRLQHKNGSQIWVECRLQLIQNSHNNAT-ITATID 390

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +I E+K++   +   A  D LTG+ NR  F  +L  I     T  ++   ++ ID+D +K
Sbjct: 391 NIHERKQAELQLRHLALHDTLTGLHNRYYFDQQLNRICQPQHTHSDIEHALIYIDLDHFK 450

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G   GD VL  + +     +    ++ R+ G+ F +IL   N            
Sbjct: 451 IINDSKGHQQGDIVLKEVAQLFITNISTEHLVFRVGGDEFAVILKHTNLLDAHLIAEGIC 510

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                      E+  +++ SIG    T      SE LK A++A+Y AK+ G N V  +  
Sbjct: 511 NAIEQNQFKSEEQIYSISCSIGLTQITEKNCDPSECLKQADIALYIAKNLGRNLVHCYAK 570

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               ++ +         +  A++   + L Y PI      E+   E L++          
Sbjct: 571 QDAHNNTLQTGLEWGHGIRQALQQDSIELHYQPIWDFRRNEVAYFEVLLRLKINDELVFP 630

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           + +F+   E L     ++  ++     ++  + +        + IN++++  LD  L   
Sbjct: 631 N-QFIPSLEMLNDTFLMDQCVIRNTIANVALYPELN-----QVAINLSAQSFLDERLVPL 684

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +++ ++K    P++I    +ES  + N   +R ++ +L  +G   ++DDFGT  S  +YL
Sbjct: 685 IESNLAKYQVLPTQIIFEITESASINNLAATRKMIEKLNILGCHFSIDDFGTGFSTFNYL 744

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   VK +GS +         +A++++I  ++ +++   +A+ +  E     L  +G
Sbjct: 745 KQLPAQHVKIDGSFVCDMLNDPIDLALVKAINDISHSLDKRSVAEYVETEEVFFALKEIG 804

Query: 932 CDYIQDSHVASPLGF----NSILKLLKER 956
            DY Q   +A P+      + + K+LK +
Sbjct: 805 VDYGQGYFIARPMPIKGVKSELEKILKNK 833


>gi|78486114|ref|YP_392039.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364400|gb|ABB42365.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 788

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 141/613 (23%), Positives = 253/613 (41%), Gaps = 48/613 (7%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-----R-QSLAVL-------G 413
           +   +   ++L + +IG   I+ +       Q +  + E     R   L +         
Sbjct: 190 LILLVAIPILLSIFVIGMMSIRRLRRFANTQQELLENLEDRVNKRTHELLLDRNLMQNLN 249

Query: 414 SGDIVWDWDIVRDRVTTTP------DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
               ++D     D++  +        ++  L  +        + +L      D +  +  
Sbjct: 250 EAIGIFD---ENDQLHISNKKLTELRLSNNLDNSHSVWELLSKAFLNL----DINAIQHK 302

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L +     RG  + E  +     Q+  +   I  + +S+   + Y  I  DITE K    
Sbjct: 303 LAT-----RGAWRGEAALTNHTQQYLIID--IAKVQDSSLPGIYYSIILTDITELKGIQN 355

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +T +PNR SF   +  ++  S    N+   +  +D++ +K +ND LG AV
Sbjct: 356 QLEFTANYDVVTQLPNRYSFNYEIYNLIQKS---PNVPFHLFYLDLNDFKWVNDHLGHAV 412

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+ L        + L     +ARL G+ F II+      +++   A  +   +      
Sbjct: 413 GDEFLWEAGLAFKQALPPDQFIARLGGDEFAIIIQKPMQPVELTQLANQLLSKLKTVNQK 472

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
                 V  SIG +S+     T   +LK+A+ AMY AK  G      F            
Sbjct: 473 QNTGHEVGCSIGISSYPEHGNTPEMLLKHADYAMYCAKKDGDLPYYLFSQEMNEQLSYLH 532

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I+E L +AV   +  + Y P   L   E+VG EAL++W       +S  EF+ +AE+  
Sbjct: 533 EIEESLHIAVREKQFQVHYQPQYNLHTLELVGAEALVRWPRTNR-MVSPGEFIPLAEKFG 591

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  F+ +   + I SW +     P  + IN +S  LL       ++  +S+   + 
Sbjct: 592 LINQIGEFVFDTAVKQINSWSNCKIALP-RVAINTSSTQLLTGNFGAFVEHTLSENHLAA 650

Query: 826 SRIKLSFSESVVMGNPERS------RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            RI +  +ESV+M N E +         L  L++ G+ +++DDFGT  S LSY+ ++  D
Sbjct: 651 DRIDIEVTESVMMKNIEHNGAGENDTSCLSILQEKGLEISIDDFGTGYSSLSYIKHLNVD 710

Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +       +  +I+++II M  ++   ++A+ I     +  L  + CD  Q 
Sbjct: 711 RIKIDKSFIDDIEFKPEARSIVKAIINMGHSLGLKVLAEGIETPNQLDILKSLNCDEGQG 770

Query: 938 SHVASPLGFNSIL 950
              + PL      
Sbjct: 771 FLFSKPLNAEKFE 783


>gi|158338195|ref|YP_001519372.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158308436|gb|ABW30053.1| diguanylate cyclase/phosphodiesterase with EAL and GAF domains
           [Acaryochloris marina MBIC11017]
          Length = 755

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 124/440 (28%), Positives = 223/440 (50%), Gaps = 4/440 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  +    +L +AF D LT +PNR  F++RL   L       +    V+ +D+D++K IN
Sbjct: 308 KHHQKETELLHHAFHDPLTDLPNRALFINRLEQSLKQLQRYPDYLFAVLFLDLDRFKIIN 367

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G  VGD +L+ +  R+   L+  D  +RL G+ F I+L    N       A  +R+ 
Sbjct: 368 DSMGHGVGDQLLMGIAERLLSSLRPGDTASRLGGDEFVILLNGLQNQEDATSTAERLRQQ 427

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P NL   EI +  SIG          + ++L++A++AMY AK  G    + F     
Sbjct: 428 LTLPFNLGVHEIFIDVSIGITLSNFGYHDAEQVLQDADVAMYQAKSAGKGCHKVFNTGMQ 487

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++ ++  A+E     + Y PI+ L    I   EALI+W       I++S+ +
Sbjct: 488 SQTMARSQLETEMRRAIERQAFEIYYQPIVCLKTGAIDAFEALIRWYDSNHQPIAASDLI 547

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  MI+ + L +L++    +  W+   +   + I +N+++K L  ++L   +  +I
Sbjct: 548 GIAEESGMIQDLGLSVLQQACNQLRQWQRLPDYETLRISVNLSAKQLFHSDLVTKVADII 607

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + +   P+ +KL  +ES ++ N + +  LL +LR++G+ L LDDFG   S LSYL  +P 
Sbjct: 608 AASRIDPTHLKLELTESTIIRNDQTTISLLKQLRELGLELYLDDFGAGYSSLSYLYSLPI 667

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + + +       +  AI+RSI+ +A N++  ++A+ +  +I +  L  + C + Q
Sbjct: 668 NALKIDQTFVQRIDMGAEGQAIIRSILLLANNLDLQVVAEGVENKIQLNYLNSLNCTHGQ 727

Query: 937 DSHVASPLGFNSILKLLKER 956
               A PL       LL+ +
Sbjct: 728 GFLFAPPLTARGATSLLRSQ 747



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYEFRVRAA 488
            +  + ++ G     +      WL  IH +DR      L++          + E+R    
Sbjct: 42  VSKSVTSLFGYTDQDLLAEPTRWLSLIHPDDRSL---ALETLSQGTLDVWQECEYRFFHK 98

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
              + W+    + +S  NG  L  IG   D TE    L+  L    +DNL
Sbjct: 99  QLGYRWVQNIFQLVSKPNGPGLELIGCWLDRTEH---LQHRLAQQQRDNL 145


>gi|167742071|ref|ZP_02414845.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
          Length = 688

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 202/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR++  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|167590664|ref|ZP_02383052.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Burkholderia ubonensis Bu]
          Length = 710

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 127/445 (28%), Positives = 219/445 (49%), Gaps = 11/445 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +    D   + +SLE +   A  D LTG+PNR SF +RL   + L+      +  ++
Sbjct: 230 TGLVSYVIDSNVRAESLEHLRRMALSDMLTGLPNRASFNERLDLEIALAHER-GTKLALI 288

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID++++K+IND+ G   GD+VL  L RR+  LL+  + +AR+ G+ F  +    N+   
Sbjct: 289 GIDLNRFKEINDLRGHHAGDEVLRILARRMTNLLRDGEFVARIGGDEFAALCR-MNDGTH 347

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             D    +  ++  P+ + + EI   AS G A +     T + ++ NA+LAMY AK    
Sbjct: 348 PMDLLGRLEPALFKPVRIDDYEIAPGASFGVAVYPDDATTKAILINNADLAMYRAKGSLT 407

Query: 690 NHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             V  +  +       R  +  DL  AV + +L + Y     L   EI G EAL++W H 
Sbjct: 408 QPVCFYEPAMDLVVRARRSLAADLRRAVADHQLSIHYQVQTSLATGEIRGYEALLRWRHA 467

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I+ +EF+ +AEE  +I  I  ++L        +W      PP  + +N+++  ++ 
Sbjct: 468 TLGAIAPAEFIPLAEESGVILDIGAWVLREACTRAATW-----EPPYVVAVNVSAMQIMH 522

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L   +  ++ +T    SR++L  +ES +    ER+   L +++ +G+S+ LDDFGT  
Sbjct: 523 ADLTGLVAQVLEETRLPASRLQLELTESTIFAGRERALDTLRQIKALGVSIALDDFGTGY 582

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L   PFD +K + S +       +  AI+R+++ + K++   I+A+ I     + 
Sbjct: 583 SSLDTLRSFPFDRIKLDQSFVADAELRPQDRAIIRAVLALGKSLGIPILAEGIETHDQLA 642

Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL 950
            L   GCD  Q   +  P   N I+
Sbjct: 643 LLAEEGCDEAQGFLLGRPAPLNEIV 667


>gi|328544418|ref|YP_004304527.1| CHASE2 domain family [polymorphum gilvum SL003B-26A1]
 gi|326414160|gb|ADZ71223.1| CHASE2 domain family [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/682 (21%), Positives = 269/682 (39%), Gaps = 32/682 (4%)

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351
            + IL   S        +   +      +     +I     G+    + +   I + +  
Sbjct: 243 VLQILAAESLLQDRAVRTAYGLETLVGAMLAGGLLIVLAPGGW---RIRVAGVIGLLVVI 299

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI-QHVLATGYFSQGIFSDGERQSLA 410
            G  + + +     +   A   GL+++ +L+    I  H L          +     S  
Sbjct: 300 EGAALGLLQLRPVMLDTAAAGTGLLMLAVLVVLGEIGLHKLLLRIARAQRRNSQAVLSRV 359

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              S D +   D        T     ILG  +  + G   +    +      + R +L  
Sbjct: 360 FADSFDGIVVIDDTGSVRAATDSARAILG--AALVEGEPADPF--LPPEIGADVRQVLHG 415

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMII--RIRPMSNSNGD-----------ILRYIGIAN 517
                      E RV  A      +        +++  G                     
Sbjct: 416 PDRPPGNPGLREIRVAVAGAAPRIVEYVVTGSVLADETGRDDAGGDETGTPPRVACVTCR 475

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE++ +   +   A  D +TG+ NR +  +RL +IL  S  D      V++  +D   
Sbjct: 476 DVTERRVAEHRVAYLARHDPVTGLINRTALEERLESILMRSRAD-RSDCVVILFSLDGLD 534

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +   LG   GD +  ++  R+ +L + P ++A +  NRF  +L           F   +
Sbjct: 535 NVVGSLGHGYGDALRAAVANRLRDLCRDPGLVASVGDNRFACVLEGV-EQDDTGRFCDRL 593

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-- 695
              +    +L    + V+ ++G A+  +    +  +L+ A  A+  A+  G N    F  
Sbjct: 594 IDRMRRDFDLQGNRVHVSITLGVATAVAGNGNAQTLLRQAGTALSLARKMGVNQRRDFDA 653

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +    + R M++ +L  A+   +L + Y P IRL D  + G EAL++W+HP  G IS +
Sbjct: 654 PMEQALTRRRMLELELWQALPRGQLRVAYQPQIRLSDGALYGAEALLRWEHPVHGPISPA 713

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAEE  +I+++  ++L +  RD  +W       PI + +N++    L  +L   + 
Sbjct: 714 EFIPIAEESGLIESLGTWVLNQACRDAAAWPQ-----PIRLAVNVSPVQFLRGDLVSAVH 768

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +    ++  R+ L   E++ MG+    R  +  L  +G S  LDDFGT  S L Y+  
Sbjct: 769 GALDGGPFAAERLDLEIVETLFMGDDRPIREAVEALTGLGCSFALDDFGTGYSSLGYIPR 828

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P   +K +   + G       +AI+RSI+ +A +   T++ + +     +  L  +GCD
Sbjct: 829 FPLGKIKIDKCFVDGICTDPGSVAIVRSIVDLADSFGMTVVVEGVETPAQVDRLRELGCD 888

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q  +   P G   I + ++ 
Sbjct: 889 VGQGYYFGRPQGAADIARRMQA 910


>gi|218245713|ref|YP_002371084.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|218166191|gb|ACK64928.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
          Length = 569

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 234/444 (52%), Gaps = 9/444 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K  E I   A  D  TG+PNR  F++ L ++L+     +  +  ++++ +++++ +   
Sbjct: 125 QKIQEKIKYCASYDESTGLPNRNFFIEHLGSLLENQQLSNTEKFAILLVHLNRFQMVKYG 184

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG+ + + + +++  R+ + +KFPDILAR+  + F I+L    ++ +  D A  ++  +A
Sbjct: 185 LGVELSEQLSIAMAERLKKYVKFPDILARMRSDEFVILLKDLEDAQEAHDLADKLQNVLA 244

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSF 700
            P +L    I    SIG     S    + E L+ A++A ++A  K+RGG+ + +  +   
Sbjct: 245 QPFHLDGSVIYSPGSIGIVHSHSCHHQTDEYLRAADIATHYAQLKNRGGSVIYNDSMRKQ 304

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ ++ DL  A+ N +LYL Y PI+ L   +I G EAL++W HPK G +S +EF+ +
Sbjct: 305 VRERLELETDLQDAIYNKQLYLNYQPIVSLETNQITGFEALVRWKHPKRGLLSPTEFIPL 364

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I  +  + +      + SW+ +      I I +N++   L + +L   +  L+ 
Sbjct: 365 AEETGLIIPLGQWAMMEACSQLRSWQQKFPQLSAISINVNLSGIQLGNPDLINQIDDLLD 424

Query: 820 KTLYSPSRIKLSFSESVVMGNP----ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +   +KL  +ES +M N       +  +L +L++  I L +DDFGT  S LSYL +
Sbjct: 425 SVGLTGESLKLEITESFLMENLMDNSSIANKMLEQLKERKIKLCIDDFGTGYSSLSYLHH 484

Query: 876 IPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + S +    +  K   I++SI+ +A+++   ++A+ +     +  L  + CD
Sbjct: 485 LPIDILKIDRSFINPKTNGRKNSDIVKSIVNLAQDLGLALVAEGVETPSQLAMLKELKCD 544

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
           Y Q    A PL  +  ++ +  +F
Sbjct: 545 YGQGYLFARPLEASQAMEFMSHQF 568


>gi|300113145|ref|YP_003759720.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Nitrosococcus watsonii C-113]
 gi|299539082|gb|ADJ27399.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 596

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/580 (20%), Positives = 231/580 (39%), Gaps = 14/580 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +        Q ++      + +F + +R  + +   GD V   +         P    ++
Sbjct: 6   IFFRSLAYFQKIMGGQKVQEALFLEHQRARMTLESIGDAVITVNCRGQVDYLNPLAEELI 65

Query: 439 GLASGSMHG-PIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMI 496
              +    G  +   +  ++  +  +    + +               +R A N+   + 
Sbjct: 66  DTTASQARGKSLEEVVCLLNEENYSHVIDDIATWLAKDPVEGRSCTALLRDAQNRELIVQ 125

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           I I P+ N    I   + +  DI+  +     +   A  D LTG+ NR+ F  RL   LD
Sbjct: 126 ISIAPLCNIQNRIFGAVLVLRDISPLRALASQLSHQATHDALTGLINRREFEVRLRKALD 185

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
               +D     +  +D+D++K +ND  G   GD +L  L   + + ++  D LARL G+ 
Sbjct: 186 DVRQNDTCHV-LCYLDLDQFKVVNDTCGHLAGDKLLRQLAALLQDKIREADCLARLGGDE 244

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG++L+  + +                  N   +   + ASIG  + T       E+L  
Sbjct: 245 FGVLLLGCDLAHAREVAESLRILIRNFRFNCKGKTFPLGASIGLVAITQGSGGLEEVLSA 304

Query: 677 AELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLM- 731
           A+ A Y AK +G + +  + +           +     +  A E S   L + PI  L  
Sbjct: 305 ADTACYVAKAQGRDRIHIYCLDDHNIERHYGEIQWVTRIQQAFERSRFMLYHQPIQALNG 364

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           DE I   E L++        I    F+  AE   ++ A++ +++      +  +  +  +
Sbjct: 365 DEHIRHCELLLRMKSEDESLIPPMAFIPAAERYRLMPALDRWVINNAFLSLEEYSIEQGL 424

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               I IN++ + + D      +   + +T  +P  I    +E+  + N + +   + +L
Sbjct: 425 ----IGINLSGQSISDELFLNFVVEQLHQTSVNPEVICFEITETAAIANFDGAIRFIRKL 480

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +++G    LDDFG+  S  +YL  +P D +K +G  +          A++ +I  + K +
Sbjct: 481 KEMGCRFALDDFGSGLSSFNYLKNLPVDYLKIDGGFVKEMVNDPVDHAMVEAIHRVGKVM 540

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               IA+ +  E   ++L  +G DY Q   +  P  F+ I
Sbjct: 541 GLKTIAEFVENEAVFEKLRAIGVDYAQGFAIGRPQPFSRI 580


>gi|53721830|ref|YP_110815.1| hypothetical protein BPSS0805 [Burkholderia pseudomallei K96243]
 gi|52212244|emb|CAH38266.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 688

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 201/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR +  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRHTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|126456988|ref|YP_001075141.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|167849102|ref|ZP_02474610.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei B7210]
 gi|242313043|ref|ZP_04812060.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|126230756|gb|ABN94169.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|242136282|gb|EES22685.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 688

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 202/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR++  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|158336590|ref|YP_001517764.1| signal transduction protein [Acaryochloris marina MBIC11017]
 gi|158306831|gb|ABW28448.1| signal transduction protein containing an EAL domain, a PAS domain, a
            CBS domain pair and a GGDEF domain [Acaryochloris marina
            MBIC11017]
          Length = 1405

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 121/607 (19%), Positives = 244/607 (40%), Gaps = 17/607 (2%)

Query: 355  WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +    +L +  I    V  +  +       V  ++    Y  Q +F + E   + +   
Sbjct: 798  TVTFEYQLPSTSIPAWYVASITPLSPTSAIWVAHNITDRKYMEQELFQEKELAQVTLQSI 857

Query: 415  GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFV- 472
            GD V   D              + G +     G         +    R     ++DS + 
Sbjct: 858  GDAVITTDAQGQIRHLNAVAEQLTGWSCFEAQGHPIHEVFQVVDETTRRPDIQLIDSVLM 917

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                   +++  + A D Q + +     P+ + N  IL  + +  D+++ ++  + +  +
Sbjct: 918  TGEIAISEHQALLIAQDGQEYAIDHSAAPIRDRNTTILGIVVVFRDVSQSRQLSQQMTWH 977

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            A  D+LTG+ NR  F   L   L  +  D  L+  +  +D+D++K +ND  G A GD++L
Sbjct: 978  ASHDSLTGLVNRYQFEQLLQKALQSAHRDQ-LQHVLCYLDLDQFKIVNDTCGHAAGDELL 1036

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLERE 651
              +       ++  DI+ARL G+ FG++L    +  +    A  +R+ +     N  ++ 
Sbjct: 1037 QQVAELFKHTIRSTDIIARLGGDEFGLLLHQC-SIERAQVIAEQLRQRLQTFRFNWNQQA 1095

Query: 652  ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMI 707
             ++  SIG  +        S ++  A+ A Y AK RG N +  +++       +      
Sbjct: 1096 FSIGLSIGLVAINYDSHNLSSLISAADAACYAAKARGRNRIHVYQLDDLELVQQRGTQRW 1155

Query: 708  KEDLCLAVENSELYLVYH---PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
               +  A+E +   L      P      E     E L++    +   +S++ F+  AE  
Sbjct: 1156 SRRIKQALEENRFRLYGQAIVPADPEQSEIHQCCEVLLRMVDEQDQVVSAATFIPAAERY 1215

Query: 765  CMIKAINLFMLERIARDII---SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
             ++  I+ +++ +   D              P   +IN++   + D +  + +Q    + 
Sbjct: 1216 NLMPEIDRWVISQFLVDHFNPPQMPKTGGDQPFPYMINLSGASIGDEQFLQFLQEQFQRY 1275

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             ++  +I    +E+  + N  ++   +  L+++G    LDDFG+  S  +YL  +P D +
Sbjct: 1276 PHAAPQICFEITETAAISNLNQAITFINELKQLGCKFALDDFGSGLSSFAYLKTLPVDYL 1335

Query: 882  KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            K +G  +          AI+ SI  +   +    IA+ +      K+L  MG DY+Q   
Sbjct: 1336 KIDGHFIEDMANDPATQAIVESINHIGHVMGLQTIAESVGDLSTRKQLQSMGIDYVQGYG 1395

Query: 940  VASPLGF 946
            +A P   
Sbjct: 1396 IALPCSL 1402



 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 5/148 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442
             V + +         +    +R       +  ++W   + +             G   +
Sbjct: 582 LMVQRDISDQVQADTALRESEQRFQQMADCAPVLLWMSGVDKQCTFFNQQWLEFTGQTMA 641

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +    + W   IH  DR     I  +    R      E+R+R  D  + W+I    P 
Sbjct: 642 HELG---KGWAEGIHPEDRQTSLDICKTAFDAR-EPFCMEYRLRRHDGAYRWLIDMGTPR 697

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGIL 530
              NG+ + YIG   DIT++K   + + 
Sbjct: 698 FLPNGEFIGYIGSCVDITDRKTLEDKVR 725



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/468 (10%), Positives = 121/468 (25%), Gaps = 82/468 (17%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER  +    +   +   D+    +        +L      +     N +  +      N+
Sbjct: 335 ERFRVMFEQAVIGIAHVDLQGQVMLANQRFCDLLQRTPAQVTHTPMNDVLQM-PQVGGNW 393

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L +     +  +Q E   R       W+ + I   + S G    +I +  DI+++K+
Sbjct: 394 QETLHA---QTQDSIQIEHHYRHPQGHSAWLDLTISLATTSTGAPDYFIVMVQDISDRKQ 450

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN--------LRPTVMVIDIDK- 575
           +                 NR+    R++  +      +             + V+D    
Sbjct: 451 AELERQKL----------NRE-LETRVSLGISAFRASEKRFRMLFNAAPDALFVVDFQGV 499

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++N       G      L   +   L      A      +   L+ + +  +  +F  
Sbjct: 500 IRRVNQAAIQQSGYKASELLGSVLKTYLSEASQAA---CETYVAQLVDQGSYHQTLEFIH 556

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN-------AELAMYHAKHRG 688
                           + +  S    +  +S+     M++        A+ A+  ++ R 
Sbjct: 557 K-----------NGTPLVIDCSCNVVTDPASQEPYILMVQRDISDQVQADTALRESEQRF 605

Query: 689 GNH----------------VESFRVSSFRSDRVMIKEDLCLAVENS-----ELYLVYHPI 727
                                 F           +  +L                +    
Sbjct: 606 QQMADCAPVLLWMSGVDKQCTFFNQQWLEFTGQTMAHELGKGWAEGIHPEDRQTSLDICK 665

Query: 728 IRLMDEEIVGLEALIQWDHPKWGN---ISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
                 E   +E  ++     +     + +  F+   E +  I +       +   D + 
Sbjct: 666 TAFDAREPFCMEYRLRRHDGAYRWLIDMGTPRFLPNGEFIGYIGSCVDITDRKTLEDKVR 725

Query: 785 WRDQANMPPI-------FIL------INIASKDLLDNELCEGMQALIS 819
             +              F+       IN     ++  ++ E +     
Sbjct: 726 SSEAQIRAVFNGMTDIVFVFDTETQQINAIPPSIVSPDMVETINQTAE 773



 Score = 58.0 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/198 (9%), Positives = 52/198 (26%), Gaps = 23/198 (11%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-LATGYFSQGI-----------FS 402
             +    L   +   +       IV++   +  +   L     ++ +            +
Sbjct: 416 GHSAWLDLTISLATTSTGAPDYFIVMVQDISDRKQAELERQKLNRELETRVSLGISAFRA 475

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             +R  +    + D ++  D                G  +  + G +     Y+    + 
Sbjct: 476 SEKRFRMLFNAAPDALFVVDFQGVIRRVNQAAIQQSGYKASELLGSV--LKTYLSEASQA 533

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              T +   V    G           +     +      +++        + +  DI++Q
Sbjct: 534 ACETYVAQLVDQ--GSYHQTLEFIHKNGTPLVIDCSCNVVTDPASQEPYILMVQRDISDQ 591

Query: 523 -------KKSLEGILCNA 533
                  ++S +     A
Sbjct: 592 VQADTALRESEQRFQQMA 609


>gi|90412207|ref|ZP_01220213.1| hypothetical protein P3TCK_27959 [Photobacterium profundum 3TCK]
 gi|90326931|gb|EAS43316.1| hypothetical protein P3TCK_27959 [Photobacterium profundum 3TCK]
          Length = 663

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 222/464 (47%), Gaps = 15/464 (3%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  +  + + +    +L       +I+ +K+ L+    NA  D LT + NR+   + 
Sbjct: 191 SHLWFDVEGKWLKDEQQLLLH----LTNISPEKEKLKKAKYNAEHDFLTDLLNRRGISNA 246

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +       +       +++ +DID +K IND  G A+GD +L ++  R+ E L+   +LA
Sbjct: 247 INE-----SNHQQQPYSLLFLDIDGFKMINDTYGHAIGDKLLKAIAIRLRETLQHKGLLA 301

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKIT 669
           R  G+ F II +   N      FA  +   +  P +L E  E+++  SIG AS+      
Sbjct: 302 RFGGDEF-IIQVEHRNVQNTLSFAKNIIAKLNKPFHLKEVGELSIGCSIGTASYPDDADN 360

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
              ++  A++AM+ AK RG N    F      +      ++  L LA+E     L Y PI
Sbjct: 361 IETLVTQADMAMHRAKLRGRNCSHHFSPDMAEALYRKMILRHHLTLALEMEAFELYYQPI 420

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           I L   ++ G EALI+W   + G +S +EF+ +AEE   I  +  ++ +     + +W+ 
Sbjct: 421 IDLKTRKLKGFEALIRWYDEELGQVSPAEFIPLAEETGQIVPLGKWIFKTAFLQLAAWQQ 480

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +       + +N++   L    L   ++A+I +   +P+++ L  +ES ++   + ++  
Sbjct: 481 KY-DKAFMMSVNLSRAQL-QASLAPTIEAMILRYNINPAQLALELTESTMLQEYDDAKQC 538

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907
           L  L  +GI L LDDFGT  S LS L  +P  TVK + S + G+ +   AI+ +   + +
Sbjct: 539 LEDLAALGIELYLDDFGTGYSSLSQLQDLPISTVKLDQSFVQGNHKGSRAIIEATKAICE 598

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++  ++A+ +     ++ L     DY Q  ++A P+  + + +
Sbjct: 599 KLDLKVVAEGVETIEQLQYLQMCNFDYCQGYYLAKPMPAHQLEE 642


>gi|167827626|ref|ZP_02459097.1| hypothetical protein Bpseu9_28352 [Burkholderia pseudomallei 9]
 gi|226195020|ref|ZP_03790611.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225932825|gb|EEH28821.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 688

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 201/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR +  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRHTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|257058758|ref|YP_003136646.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|256588924|gb|ACU99810.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 578

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 234/444 (52%), Gaps = 9/444 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K  E I   A  D  TG+PNR  F++ L ++L+     +  +  ++++ +++++ +   
Sbjct: 134 QKIQEKIKYCASYDESTGLPNRNFFIEHLGSLLENQQLSNTEKFAILLVHLNRFQMVKYG 193

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG+ + + + +++  R+ + +KFPDILAR+  + F I+L    ++ +  D A  ++  +A
Sbjct: 194 LGVELSEQLSIAMAERLKKYVKFPDILARMRSDEFVILLKDLEDAQEAHDLADKLQNVLA 253

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSF 700
            P +L    I    SIG     S    + E L+ A++A ++A  K+RGG+ + +  +   
Sbjct: 254 QPFHLDGSVIYSPGSIGIVHSHSCHHQTDEYLRAADIATHYAQLKNRGGSVIYNDSMRKQ 313

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ ++ DL  A+ N +LYL Y PI+ L   +I G EAL++W HPK G +S +EF+ +
Sbjct: 314 VRERLELETDLQDAIYNKQLYLNYQPIVSLETNQITGFEALVRWKHPKRGLLSPTEFIPL 373

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I  +  + +      + SW+ +      I I +N++   L + +L   +  L+ 
Sbjct: 374 AEETGLIIPLGQWAMMEACSQLRSWQQKFPQLSAISINVNLSGIQLGNPDLINQIDDLLD 433

Query: 820 KTLYSPSRIKLSFSESVVMGNP----ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +   +KL  +ES +M N       +  +L +L++  I L +DDFGT  S LSYL +
Sbjct: 434 SVGLTGESLKLEITESFLMENLMDNSSIANKMLEQLKERKIKLCIDDFGTGYSSLSYLHH 493

Query: 876 IPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + S +    +  K   I++SI+ +A+++   ++A+ +     +  L  + CD
Sbjct: 494 LPIDILKIDRSFINPKTNGRKNSDIVKSIVNLAQDLGLALVAEGVETPSQLAMLKELKCD 553

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
           Y Q    A PL  +  ++ +  +F
Sbjct: 554 YGQGYLFARPLEASQAMEFMSHQF 577


>gi|298529550|ref|ZP_07016953.1| diguanylate cyclase/phosphodiesterase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510986|gb|EFI34889.1| diguanylate cyclase/phosphodiesterase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 637

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/443 (26%), Positives = 217/443 (48%), Gaps = 6/443 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS-ATDDNLRPTVMVIDIDKYKKIND 581
           ++  + +   A  D LT +PNR      L   +     T+D  +   +++D+D +K++N+
Sbjct: 196 QERTKQLEAQASYDRLTHLPNRDMIFKNLEKQIRWCLHTNDQCQAAFILVDLDMFKEVNE 255

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +LV +  R+ EL    +IL RL G+ F ++    +   +    A  M +++
Sbjct: 256 SLGHQTGDRLLVQVGERLQELTDDCEILGRLGGDEFALVFTGNDVRKQATKRAGQMIQAM 315

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSF 700
           A P  L  + + +  SIG A +     T  ++L  A++AMY AK    G  V   +  S 
Sbjct: 316 ARPFELQGQSLLLDVSIGIAIFPEHGKTLGQILSRADMAMYAAKRMKTGYAVYDPKFESS 375

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ +  +L   +++ +L L + P I L    + G+EALI+W HP  G IS  EF+ +
Sbjct: 376 GINRLNLMSELKKGLQHDQLSLYFQPKINLHTSRVCGVEALIRWHHPTRGFISPEEFIPL 435

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I+ +   ++      +  W+       I + IN++ +D+ DN L   + + I  
Sbjct: 436 AEQGGLIRELTSRVIRMSMEHLQHWKAIG--ISIPVSINLSVRDIQDNNLPSQISSAIEN 493

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S ++L  +ES  M  P++   +L  L  +GI + +DDFGT  S ++YL  +P   
Sbjct: 494 HALDASCLELEITESAFMSAPQKGLRVLKNLDSLGIPMGIDDFGTGYSSIAYLRDLPVKI 553

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      +    I++SII +  N++  ++A+ +     +  L  +GCD  Q  
Sbjct: 554 IKIDRSFVMDMDSNDNNRKIVKSIIDLGHNLDLQVVAEGVESRTSLDMLKELGCDMAQGY 613

Query: 939 HVASPLGFNSILKLLKERFPLVK 961
            +  P  F+ +   L+++  L K
Sbjct: 614 FILKPRPFDELTDWLQKKTDLQK 636


>gi|148261367|ref|YP_001235494.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|326404854|ref|YP_004284936.1| hypothetical protein ACMV_27070 [Acidiphilium multivorum AIU301]
 gi|146403048|gb|ABQ31575.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|325051716|dbj|BAJ82054.1| hypothetical protein ACMV_27070 [Acidiphilium multivorum AIU301]
          Length = 790

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 154/738 (20%), Positives = 282/738 (38%), Gaps = 31/738 (4%)

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
            +  G L            +         +  +++ +   L   R       +     + 
Sbjct: 56  GLVSGALCWSFWNRLHGAPLLTGGFAGLFTGYVLLSISAILWARRPADVRPVVFKLAFSG 115

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           +A++  + + + ++        + + +LY     +         A+  +  W  + I  +
Sbjct: 116 LALMIGIFWSFILIGGLHHADPVQTSMLYAVAIGLMSTSAFSGPALYALALWTPVTIGSV 175

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV- 411
              MA      +  I PA     +     + F+ I +V A     +    + ERQS  + 
Sbjct: 176 IAIMA------DSAIPPAATLIGLASYAFLTFSTILYVNANTMERELRRLEAERQSEVIN 229

Query: 412 -------LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH----IND 460
                   G+ D +W+ D     +  +   A +       +           H     + 
Sbjct: 230 LLLRDFEEGASDFLWETDASLTLIRPSLRFAEVARSTPAELASMSIIRFLVEHGRAGPDH 289

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
             N           RR             N+     I  +P+ +  G  + Y G+ +D+T
Sbjct: 290 SCNAAVGNLIHRIGRRETFNEPRTPLHFSNEERCWSIAGKPVFDREGVFIGYRGVGSDVT 349

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + +   I   A  D+LTG+ NR SF + L            +   ++ +D+D +K +N
Sbjct: 350 AHRLAERKIAHIASHDSLTGLGNRMSFDEALQAACSGPV---GVGTGLICLDLDHFKSVN 406

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD++L ++ RRI   ++  D   RL G+ F I+L               +   
Sbjct: 407 DRFGHKTGDELLHAVARRILSCVRSHDRCFRLGGDEFAILLPDAT-IADAEAVTGRIIDR 465

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P  L +  + + +  G A  T   I   +    A+LA+Y AK  G      F   + 
Sbjct: 466 LADPFRLADVTVAIGSCAGIAMITRPGILPEDARHAADLALYRAKASGRGSARLFDPEND 525

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R       I   L    E    +L Y PI+RL    +  +EAL++W HP++G +   +F+
Sbjct: 526 RHTTRLRQIDAALVNEFEKQVFFLEYQPIVRLDSGAVTTVEALVRWKHPEYGILPPDQFI 585

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             +E    I  I  F++E       +  D      I + +N++   L D  L E + A +
Sbjct: 586 RASEHNGAIIRIGAFVIEAACAYAATLPDH-----IAVAVNLSPVQLHDPALIERIGAAL 640

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P RI+   +E+ ++     +R +L  +  +G  L LDDFG+  S +S L Y  F
Sbjct: 641 VRHRLGPGRIEFELTETAILDVSPETRRILEAITALGCRLALDDFGSGYSSISTLYYFRF 700

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+       +R  IL  I  MA+++  TI A+ +  +     L  +G +  Q
Sbjct: 701 DRLKIDRSLIKDAMDDPRRRTILFHIGRMARDVALTITAEGMETDHHRVSLIELGFEEGQ 760

Query: 937 DSHVASPLGFNSILKLLK 954
            S  A P+   ++   L+
Sbjct: 761 GSLFAMPMSGEALHDWLR 778


>gi|319780479|ref|YP_004139955.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166367|gb|ADV09905.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 449

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 110/444 (24%), Positives = 213/444 (47%), Gaps = 10/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       AF D LTG+ N + F D++  ++   A D     TV ++D+D +K IND+ 
Sbjct: 9   QANRESTDLAFTDPLTGLGNHRRFFDKVDRLIADRADDP-APFTVGILDLDGFKPINDLF 67

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GDD+L+ +  R+   +     + R+  + F  +     +    A+ +  + + ++ 
Sbjct: 68  GHKAGDDILIQVAMRLRASMDGYSTVCRIGADEFAFLYPMVFSEDAAAEKSRMLIEILSA 127

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P ++ ER   ++AS+G + + S   T+  ++  AE A+YHAK  G   V  +      + 
Sbjct: 128 PYDVGERTARLSASVGCSLFYSGDETTEILINKAETALYHAKRSGRGRVVVYTREMEEAA 187

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    I++ L  AV   E+   + PI+ L     +G E L +W     G++  + F+ IA
Sbjct: 188 KRVTRIEQALRRAVSAGEVEPHFQPIVDLATRRTIGFETLARWTDRDLGSVPPTVFIPIA 247

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  ++  +L +      SW        +F+  N++   L+D      + A++ +T
Sbjct: 248 EERGIIGPLSQLVLRKATEAARSWPK-----DLFLSFNLSPSQLVDQNTGLHILAILDRT 302

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P R+++  +E+ +M +P  +  ++  LR++GI ++LDDFGT  S L  L    FD +
Sbjct: 303 GFDPRRLEIEITETGLMNDPASAAQIVEDLRRVGIRVSLDDFGTGQSSLGRLREFHFDKL 362

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + ++   + R    I+R+I+ M + +   ++A+ I  E     L + GC   Q   
Sbjct: 363 KIDRAFVSSILDDRPSEHIIRAILAMCEGLGMDVVAEGIEQEAQADRLVQFGCAGGQGYL 422

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
              P+  ++ L  L++ F      
Sbjct: 423 FGKPVDADATLGYLRDSFRGALRA 446


>gi|83646934|ref|YP_435369.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634977|gb|ABC30944.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 571

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 121/554 (21%), Positives = 247/554 (44%), Gaps = 43/554 (7%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH-------WMII 497
           +    +     I   + ++    L+    +R      ++++   D           W+  
Sbjct: 23  LLAKYQEPFSSI--EEVESAEEALEILQHHRPICCLLDYQLPGMDGLTFLRKLKKLWIDD 80

Query: 498 RI-RPMSNSNGDILRYIGIAN----------DITEQ------------KKSLEGILCNAF 534
            I   +    GD    + +            D+T +                  +   A 
Sbjct: 81  MIPVVVLTGQGDESIAVQLMRNGAHDYLVKGDLTAESLHRAIGNAVRTCSLQHQLNYMAH 140

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  FLDRL   +  +  + +   ++  +D+D +K +ND LG   GD +L +
Sbjct: 141 FDALTGLLNRALFLDRLQLAIKKAERN-SYECSLFYLDLDHFKPVNDSLGHDAGDALLQA 199

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  RI  +++  D +AR+ G+ F ++L +  +     + A  + + +  P ++ E E+ V
Sbjct: 200 VAGRIKSVVRETDSVARIGGDEFVVLLENV-DVNITRNVAEKLLEEVNRPTHIAEHEVAV 258

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
           ++SIG A + ++  ++ E+LK+A+LA+Y AK RG +    F  S     +    ++  L 
Sbjct: 259 SSSIGIARYPTTAKSAQELLKHADLALYAAKGRGRSTYHEFSQSQKEIWQRKQALEAALP 318

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   EL   + PI+ +  E + G E L +W    + NI + E + + E L +++  N 
Sbjct: 319 KAIAKGELQPYFQPIVDIPGERLRGFELLSRWPMSDYPNIQAMELIQMVEGLGLMEPFNE 378

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++++ +    + W  +   P I + IN+ +    +  L +  ++ +S+    PS I+L  
Sbjct: 379 WLIDEVCGKAVLWTKEF--PDISLSINMPANQFHNTYLVDMFRSKLSRYPIDPSVIELEI 436

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           +E+ +M  P+ S  LL  L ++G+ + +DDFGT  S L+YL  +P D +K +        
Sbjct: 437 TETTLMRQPDASIRLLNSLHELGLRIAVDDFGTGYSSLAYLTRLPIDILKIDKCFFLEAQ 496

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG--FNS 948
             E+   ++ +++ +  ++   + A+ I  +    +  +  CD  Q      P      S
Sbjct: 497 HDERNKKVIETVVALGHHLGLKVTAEGIESDKQWNDAKKSRCDLAQGYLFGRPTPCGSQS 556

Query: 949 ILKLLKERFPLVKN 962
           + + + E FP ++ 
Sbjct: 557 LKEFM-EHFPRIQR 569


>gi|172058506|ref|YP_001814966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171991027|gb|ACB61949.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 933

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 113/513 (22%), Positives = 230/513 (44%), Gaps = 17/513 (3%)

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             IH  D +  R  L+  +      ++ +   +        M + I  + + NG+     
Sbjct: 434 ELIHPADLNRVRRTLNRAIDGYSQTIRCQMIFKQ---DIRNMFVNIIHVPSKNGNGTALY 490

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
              +D T+Q K  E I   A  D LT + NR  F  ++   +      +     ++ I +
Sbjct: 491 LTCHDETDQFKREEKITQLALFDVLTSLLNRNGFEQKMEEAIAAPQPGE-----LVTIGV 545

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            ++++IND+ G + GD +L  L  R+          AR+ G+ F +++  +         
Sbjct: 546 RQFRRINDIYGHSAGDQILKELANRLRHHFIGTGSAARIGGDEFAVLIFQQEIVD----- 600

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNH 691
              ++  +  P  +   +I V+ S+    +    +  + +L + ++AM HAK    GG  
Sbjct: 601 YRDLKTILERPYRIDGEKIDVSISMSMVRYPDDAVAVTSLLSSVDIAMQHAKREQTGGPI 660

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +S    + V+++ +L  A+  +EL L Y P + L  + + G EAL++W HP+ G 
Sbjct: 661 WFESWMSEEYRESVVLEAELREAIARNELQLFYQPQVNLKTKTVDGCEALLRWFHPERGM 720

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS + F+ IAE   +I+ I +++++     +  W +   +  + +  N++ K+L+   + 
Sbjct: 721 ISPAVFIPIAERSMLIEEIGMWVVQESVNQVRRW-EGTPLESLRVSANLSVKELVSGRIV 779

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  +         R++L  +ES  + +  R    L  L ++G  L +DDFGT  S LS
Sbjct: 780 ELLTNVRDLYPGIEQRMELEITESFGVFSDTRVFDALQTLHRLGYRLAIDDFGTGYSSLS 839

Query: 872 YLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           YL  +P   +K + S ++G+       ++ +II +A  ++  ++A+ I      + L ++
Sbjct: 840 YLSRLPIQRLKIDRSFISGTDACSNAPLIETIIRLAHTLKYDVVAEGIEQAEQGENLRKL 899

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            C+Y Q  + + P+  +            +K +
Sbjct: 900 DCEYGQGFYYSRPIPADEFEIWYDRYQEDIKQS 932


>gi|332993899|gb|AEF03954.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 701

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 218/432 (50%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              E ++  A  D+LTG+PNRQ  LD L   L  +  +D+    ++  D+D +K IND L
Sbjct: 258 NQQETMIRLANYDSLTGLPNRQFVLDNLRLELARARRNDD-DLALLFFDLDGFKGINDSL 316

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+  LL+  D++ARL G+ F ++   E     + + AI +  +   
Sbjct: 317 GHETGDLILIEVADRVSALLREGDLVARLGGDEFLVLPDRETGDTTLENMAIRLIDAFTS 376

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L    ++V  S+G A    +    SE++ NA+LAMY +K +G      F      S 
Sbjct: 377 PFELRGLSLSVGVSVGVARAIDADYDLSELMSNADLAMYRSKAKGRGSFTIFTPDMVESH 436

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    +   +   ++N E  + Y   +     +++GLE L++W HP++G +S +EF+ IA
Sbjct: 437 KRKFHLANAIEQGLKNDEFMVYYQVKVDQK-GKVIGLEGLLRWQHPEYGLVSPNEFIPIA 495

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I AI  +++E++  D+   R+        + +N++  DL D+ L + +  + ++ 
Sbjct: 496 EQGGKISAITRWVIEKVCIDLPKLREWLPHR-FRVSVNLSGHDLRDSNLFDNIYEIFTRY 554

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  ++   +ES  + N   S     R+  +G ++ LDDFGT  S LSYL  I  DT+
Sbjct: 555 DVNPEYVEFEVTESAYLENFASSNKFFKRMSNMGCAIALDDFGTGYSSLSYLTQISIDTL 614

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +     +E+   +  +II +AK +  T+ A+ I  E     L   GCDYIQ   
Sbjct: 615 KIDKQFVHELETSERSRLVTGAIIDLAKRLSLTVCAEGIENETQWHYLIDHGCDYIQGFM 674

Query: 940 VASPLGFNSILK 951
            + P+  + +++
Sbjct: 675 FSKPIPMDELVQ 686


>gi|320322411|gb|EFW78504.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320330121|gb|EFW86108.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 683

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++        + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQAKIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGEQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPGNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETLEQEAYIVTQGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|311696620|gb|ADP99493.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 684

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 232/565 (41%), Gaps = 10/565 (1%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
               + +  ER    V      +   D               LG  +  + G        
Sbjct: 124 ALDKLAAAEERYREIVQAQKQFILRLDSDFRITFANASFTRALGTENTDIIGAPITVFFN 183

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                R   R             +  +  +   D     +    R  S    D     G 
Sbjct: 184 -EPGHRIRQRLASLFSDENTSEEIAVKVTMNGKDGSQTLVDWSFRRTSTQGSDEAELQGF 242

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D++EQ+++LE        D LTG+ N+Q+ ++        ++        ++ IDI+ 
Sbjct: 243 GIDVSEQERALEQAHYLRTHDPLTGLLNKQTLVEDCKLWFRSAS-----PGALLYIDIEH 297

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +  IN   G  +GD VL+ L  RIG  ++  +  AR   + F   +   N+       A 
Sbjct: 298 FSLINQRYGYEIGDAVLIKLANRIGRAMQRANHCARAGADTFLAAIQ-VNSQADAEAVAE 356

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVES 694
            + + I+ P  L E ++ V A+IG A +         + + AE A   A+       +  
Sbjct: 357 RIIEYISTPFKLRENQLNVRATIGIAMYPEDSEVIEVLPELAESANGFARDRNQRIGIFD 416

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F        ++ I++ L  A+E+ +L +   P  R+ D+ I G EAL++W HP+ G IS 
Sbjct: 417 FEHHKVLHRQIEIEQGLKDAIESHQLAIYLQPKYRISDKSIAGYEALVRWHHPREGFISP 476

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ IAE+  +   ++ ++L R+   I S R      P  + INI        +  + +
Sbjct: 477 GEFVPIAEKSSLGLELDHYVLVRVFELIASARATIRDFP-PVAINITPAHFSRVDFHKLV 535

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A I+        ++L  +E  VM   E +R  L  LR  G+ + +DDFGT  S L+YL 
Sbjct: 536 LAGIADANIPIESVELEITEGAVMERSEEARQNLDALRSQGVRIAIDDFGTGYSSLNYLR 595

Query: 875 YIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           Y+  D +K + + +    TEK   I++SII +A   +  ++A+ +      + L  MGC 
Sbjct: 596 YLGIDDLKIDKTFVDEVLTEKGKIIVKSIIDIAAAHDIQVVAEGVETAQQFELLREMGCH 655

Query: 934 YIQDSHVASPLGFNSILKLLKERFP 958
             Q   ++ PL  +  ++L  ++ P
Sbjct: 656 LCQGYLLSKPLPVDEAIELFSQQSP 680



 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 403 DGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
             +  + A+   + D +   +        +     + G A+  + G   + L   + + R
Sbjct: 2   SKQDLASALMDAAVDAIIVINDKGIIQQFSESARALFGYAAEEVIGHNVSMLMP-YPDAR 60

Query: 462 --DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             D +     +    +   +  + + +  D Q   M + +     ++  +  ++GI +D+
Sbjct: 61  HHDRYIENYKNSGVGKIIGIGRDVKGQRKDGQTFPMHLSVGESEFADQHL--FVGICHDL 118

Query: 520 TEQKKSLEG 528
           +  K +L+ 
Sbjct: 119 SNYKNALDK 127


>gi|229592248|ref|YP_002874367.1| putative signaling protein [Pseudomonas fluorescens SBW25]
 gi|229364114|emb|CAY51735.1| putative signaling protein [Pseudomonas fluorescens SBW25]
          Length = 683

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 211/446 (47%), Gaps = 6/446 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I  +   + ++   +L  A  D LTG+PNRQ   ++L  IL  +      R  V+ + +
Sbjct: 231 SIERNTHLRHEAESSLLRMAQYDFLTGLPNRQKLQEQLDKILTDAGRRQR-RVAVLCVGL 289

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +N+      GD +L++L  R+         LARL G++F ++    +   + A+ 
Sbjct: 290 DDFKSVNEQFTYQAGDKLLLALADRLRAHSGRLGALARLGGDQFALVQADIDQPYEAAEL 349

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A ++   +     L    I + A+IG   +     ++ ++L+ AE  M  AK R  N  +
Sbjct: 350 AQSILDDLEAEFALDHEGIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKTRSRNRYQ 409

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S     R    +++DL  A+  ++ +LVY P I   D  +VG+EAL++W HP+ G 
Sbjct: 410 FYIASVDSEMRRRRELEKDLREALGRNQFHLVYQPQISYRDNRVVGVEALLRWQHPEHGL 469

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+   I  I  ++L++  R +  W D      + + +N+++  L   EL 
Sbjct: 470 VPPDLFIPLAEQNGTIIPIGEWVLDQACRQLREWHD-LGFTDLRMAVNLSTVQLHHTELP 528

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LS
Sbjct: 529 RVVNNLMQIYRLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLS 588

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I+R+II + K++   +IA+ +        +  
Sbjct: 589 YLKSLPLDKIKIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQEAYIIS 648

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GC   Q  H + PL    +   LK+
Sbjct: 649 EGCHEGQGYHYSKPLQARELAAFLKQ 674


>gi|225850774|ref|YP_002731008.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Persephonella marina EX-H1]
 gi|225644881|gb|ACO03067.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Persephonella marina EX-H1]
          Length = 687

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 129/500 (25%), Positives = 227/500 (45%), Gaps = 33/500 (6%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +    + +S     RG L    R+   D                      +  IA  I  
Sbjct: 217 ERIERLFNSVQEISRGNLDVNVRLYGND---------------------EFAVIARVIDN 255

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             K L+  +     D LTGI NR +  +++  +L  S  D      ++ +DID +K+IND
Sbjct: 256 LVKRLKRFI---RYDYLTGIFNRFALENQIKEMLKNSPEDAKN--ILIFMDIDNFKEIND 310

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD VL    +R+   +K   I+ RL G+ F I +      L I        + +
Sbjct: 311 TFGHNVGDLVLRIFAKRLKNTVKEG-IVGRLGGDEFLIFIQD-RGRLDINSLLDKWMRVL 368

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +    L    I ++ + G +     +    ++LK +++A+Y+ K +G N    F      
Sbjct: 369 SSSYKLKNNIIDISVTAGVSIHEGKRGDFYKLLKESDIALYYGKKQGKNMFIIFNDQIKI 428

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +     +   +  A+E  E YLVY PI  +  E+IV +EAL++W + +  +I  S+F+ 
Sbjct: 429 KEEKRIKLTNLMKHALEKKEFYLVYQPIYDINTEKIVSVEALLRWKNAEGEHIPPSDFIP 488

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I EE  +IK +  +++E + + +  W     +  I I +NI  + +L+    + ++++IS
Sbjct: 489 ILEETGLIKEVGRWVIEEVCKQLKRWNS-LGIKDITISVNIDIQQILEENFVKTVESIIS 547

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K   + S +K   +ES  M  PE     L  L  IGI +++DDFGT  S LSYL  +P  
Sbjct: 548 KECKTFSSLKFEITESEAMKFPETVIQTLKNLNSIGIEISIDDFGTGYSSLSYLKTMPVA 607

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    + ++I+ ++KN    +IA+ +  E  +  L  + CD +Q 
Sbjct: 608 YIKIDRSFIKDLPEDKDDRILTKAIVELSKNFGYKVIAEGVETEEQLIYLKEIKCDMVQG 667

Query: 938 SHVASPLGFNSILKLLKERF 957
            +   PL  + +  LLK + 
Sbjct: 668 FYFCRPLPADELEGLLKNQL 687


>gi|253998638|ref|YP_003050701.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253985317|gb|ACT50174.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylovorus sp. SIP3-4]
          Length = 682

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 121/443 (27%), Positives = 217/443 (48%), Gaps = 7/443 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++++K + E +   A+ D +T +PNR  F ++LT +L+ +A        +M ID+D +K 
Sbjct: 238 LSQRKLAEEQLDKLAYYDTVTHLPNRHFFNEQLTLMLEHAAQRQQSCY-LMFIDLDNFKS 296

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +L     RI + L    IL R+ G+ F IIL        I   A A+ 
Sbjct: 297 VNDTLGHLAGDSLLREAGSRILQTLVPGSILCRIGGDEFAIILRD-QPLSAIDATASAII 355

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +    +   E+ V ASIG +++ +     S +L+NA+ AMY AK  G N    +   
Sbjct: 356 ALFSEKFVINAHEVFVGASIGISNFPADADHVSGLLRNADTAMYWAKADGKNTFRYYSRE 415

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              S      +   L  A+   EL L Y PI+ L   +IVG EAL++W  P+ GNI    
Sbjct: 416 LEDSAHQQEKLMSMLQKALPGHELELYYQPIMALETRKIVGFEALLRWHQPELGNIRPDV 475

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  I  ++LE       +W+++     + + +N + +      + + +  
Sbjct: 476 FIPLAEASGLIMQIGEWVLETACLQAKAWQERYA-SGLIMNVNFSGRQFHHPNIVQNIVN 534

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +++K       + +  +ESV+M         +  LR+ G+ + +DDFGT  S +SYL   
Sbjct: 535 MVNKVGLDARLLNIELTESVLMDQSSVMIEKMHMLRQAGLDIAIDDFGTGYSSMSYLRQF 594

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +T+K + S + G     +  AI ++I+ +AK ++ + +A+ +  +   + L   GC+ 
Sbjct: 595 PINTIKIDRSFIKGLPDDPEGSAIAQAILALAKTLKLSAVAEGVETQAQAEFLRANGCEK 654

Query: 935 IQDSHVASPLGFNSILKLLKERF 957
           IQ    + P+  +   +L+ ++ 
Sbjct: 655 IQGYLFSPPVTADDAERLICQQL 677


>gi|260886767|ref|ZP_05898030.1| putative pas:ggdef protein [Selenomonas sputigena ATCC 35185]
 gi|330839418|ref|YP_004413998.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Selenomonas sputigena ATCC 35185]
 gi|260863366|gb|EEX77866.1| putative pas:ggdef protein [Selenomonas sputigena ATCC 35185]
 gi|329747182|gb|AEC00539.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Selenomonas sputigena ATCC 35185]
          Length = 580

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/549 (20%), Positives = 222/549 (40%), Gaps = 24/549 (4%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYR 475
           ++  D+      T+P+I    G+ + +M      + W   +H  +R++   + D  +   
Sbjct: 31  LYVVDLQNKVAMTSPNIVRDFGIPAETMGFSAFRQAWQEIMHPTERESATKVFDDVLQGH 90

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                 EFR R    ++ W+  R     +  G+   Y GI   + ++ ++          
Sbjct: 91  TREGCVEFRARTRKGEYEWIECRCAAALDHEGERTLYAGIFRLMGQRIRA---------- 140

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+ N+     R+   LD +         +M++ ID +K +N+    A GD VL  +
Sbjct: 141 DAVTGLLNKYRLEQRMKAALDEARETGRG-GALMILGIDNFKIVNEAYNRAFGDQVLREV 199

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            +RI ++L     L +L G+ FGI+     +   +     +++ ++  P  + E +   T
Sbjct: 200 AKRIKKILSTDFRLYKLDGDEFGIVYPG-ADEADVETLYRSIQTALLKPQQINEHKYFCT 258

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCL 713
            S G   +         + K AE A+  AK  G N    F    +      +    D+  
Sbjct: 259 VSGGTVFFPQFGKDYLVLHKYAEAALTLAKQGGKNKNCIFSKELYNRWLRSLTAREDIRR 318

Query: 714 AVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           +VE+      L + P +      I+G EAL++W + K   ++  EF+ + EE  ++  + 
Sbjct: 319 SVEDGCRGFSLCFQPQVGADSRRIIGAEALLRWQNSKGRMVAPMEFIPLLEESQLMIPVG 378

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ +   R    W+    +P   + IN++   L D    E ++  I +    P+ I L 
Sbjct: 379 KWIADTAVRICREWQK--IVPDFCMSINLSYVQLRDPSFKEAVRECIERYGVDPASIVLE 436

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  V+ + +        LR+ G+ + +DDFGT CS L+    +  D VK +   +   
Sbjct: 437 LTEHTVISDWDFINRQFASLREYGLKIAMDDFGTGCSSLAMFKNLSCDIVKIDRVFVKQI 496

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL-TRMGCDYIQDSHVASPLGFNS 948
             ++    I+   + +  ++   +  + +  + +   L      D IQ      P     
Sbjct: 497 LWSDFDRRIVDYTVELCHSMGMKVCIEGVETQEEYDLLAKTCKVDSIQGYLFGRPETKEG 556

Query: 949 I-LKLLKER 956
              K L  +
Sbjct: 557 FEEKFLMRQ 565


>gi|294649294|ref|ZP_06726729.1| GGDEF domain family protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292824847|gb|EFF83615.1| GGDEF domain family protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 687

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 210/437 (48%), Gaps = 9/437 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   +  D+LT +PNR  FL     ++       N +     ID+D++K +ND  G 
Sbjct: 254 NKELATQSLHDSLTKLPNR-LFLTDYAEVIFPLHHLHNQKVAFFYIDLDRFKSVNDAFGH 312

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L+ +  R+   L     L R+ G+ F +I  +  ++     FA  +   I    
Sbjct: 313 HIGDQLLIQMAHRLKSKLNANQRLFRIGGDEFVLISENTESAE-AMRFADEILHHIQETY 371

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +  ++I ++AS+G A +        ++L NA++AM  +K +G N    F   S + D  
Sbjct: 372 LIAGKDINISASLGIAIYPEHGRNIQDLLINADIAMLTSKDQGRNTYTMFHAMSDQQDVR 431

Query: 706 M---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +  DL  AV+  +  L Y P     + E+ G+EALI+W HP  G ++   F+  AE
Sbjct: 432 SQSKLINDLYKAVDEQQFVLFYQPKF-TANYEVCGVEALIRWKHPSLGLLTPQMFIDGAE 490

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  + LE+  + I  W +Q+N P   I +N+++    + +L   ++ LI++  
Sbjct: 491 KTGLIIPMGYWALEQACQQIQKW-EQSNSPFYPIAVNLSALQFENKKLFSVLEQLIAQYQ 549

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +ES  M + + S   L RLR++GI + +DDFGT  S   YL  +P D +K
Sbjct: 550 IKPHNLILEITESTAMHHIDASVRTLERLRQLGIRIAIDDFGTGYSSFLYLKDLPVDELK 609

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AIL SII +A  +  T+ A+ +  +     LT++GC  +Q   +
Sbjct: 610 IDRGFIIDLQPNSKEEAILESIIHLATKLGLTVTAEGVETQQQADILTKLGCHQLQGYLL 669

Query: 941 ASPLGFNSILKLLKERF 957
             P+    ++   ++ F
Sbjct: 670 GIPVNVEGLVLHRQQHF 686


>gi|148261059|ref|YP_001235186.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
 gi|146402740|gb|ABQ31267.1| diguanylate cyclase/phosphodiesterase [Acidiphilium cryptum JF-5]
          Length = 705

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 219/440 (49%), Gaps = 8/440 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +++ E+++    +   A  D LTG+ NR +F  RL    + S      R  ++ ID+D +
Sbjct: 250 HEVAERERYAAALSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPG-RVALLFIDLDSF 308

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND+ G  +GD VL     R+  ++     +AR  G+ F + L        +   A  
Sbjct: 309 KQINDLRGHEMGDQVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRH-AER 367

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + ++I  PI +      V AS+G A +  +  T+  +++ A++AMY AK  G +  + F 
Sbjct: 368 LIEAIKTPITVGADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFD 427

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +   +DR  +++ L  A++  +  LV+ PII          EAL++W+HP  G +S 
Sbjct: 428 PVLADDMADRYDLEQGLRDAIKGDQFRLVFQPIIDARTGACTAFEALLRWNHPVRGAVSP 487

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ +AE+   I+ I  ++LE   R    W      P I + +NI+   +L   L + +
Sbjct: 488 ATFIPVAEQSGQIERIGRWVLEEACRAATGW----PDPSIAVTVNISVSHVLVGSLLDDV 543

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  ++ +   PSR+K+  +E++ + + +RS  L  RLR++G+ + LDDFGT  S LS+LG
Sbjct: 544 EHALAVSGLPPSRLKIEITETMFLHDADRSAPLFDRLRQMGVGILLDDFGTGFSSLSFLG 603

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            +P D +K + S +  +     A + +I+ +A+ +   + A+ +      + L   G   
Sbjct: 604 NLPIDVIKIDQSFVRDAGRNGYATIEAILSIARALGLQVTAEGVETPEQNRNLVERGVGS 663

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q    + P+    +   L+
Sbjct: 664 VQGYLFSRPIPAADVTDWLQ 683


>gi|332874050|ref|ZP_08441985.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|322506769|gb|ADX02223.1| EAL domain-containing protein [Acinetobacter baumannii 1656-2]
 gi|323516639|gb|ADX91020.1| EAL domain-containing protein [Acinetobacter baumannii TCDC-AB0715]
 gi|332737791|gb|EGJ68683.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 684

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 208/436 (47%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  +   
Sbjct: 305 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLHL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 483 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALRFENKKLFSTLEGL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+    +++
Sbjct: 662 QGYLLGMPVNVGQLIQ 677


>gi|21242682|ref|NP_642264.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108154|gb|AAM36800.1| GGDEF family protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 695

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 209/433 (48%), Gaps = 7/433 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G A+GD +LV
Sbjct: 263 LHDPLTRLPNRILLHEHLVQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHALGDRLLV 321

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+ 
Sbjct: 322 VVAERLNAHRRAHGSLARLGADEFV-LVADIADPEDAAALAAHLVQALAVPFLVANHELR 380

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           +++SIG A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L
Sbjct: 381 LSSSIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQEL 440

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  + 
Sbjct: 441 PRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLG 500

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +  R +  WR   +     + +N+++  L    L + +   +S+   +P ++ L 
Sbjct: 501 SWVLRQACRQMRDWRQAGHG-DWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLE 559

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +   
Sbjct: 560 ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAM 619

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     
Sbjct: 620 DGSAEDIAIVAAVVALAHTMRLQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERF 679

Query: 950 LKLLKERFPLVKN 962
           +  +  +    + 
Sbjct: 680 IATVVAQRDGPRR 692


>gi|320332848|ref|YP_004169559.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754137|gb|ADV65894.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 810

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 205/437 (46%), Gaps = 15/437 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LTG+ NR +F       L  +    +    V+ ID+D +K++ND LG  
Sbjct: 380 ERLAYQAQHDALTGLLNRAAF----EGALQAAVQGPDTTLGVLFIDLDHFKQVNDTLGHP 435

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L+ +  R+   ++  D++AR  G+ F ++L +      +   A  +  +++ P++
Sbjct: 436 VGDALLIQVAERLSVCVRDGDLVARQGGDEFTVLLRNVQAHADVEAAAQRILDALSAPMD 495

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFRSDRV 705
           L+ R + VTASIG A +       + + K+A+LAMYHAK            +      R+
Sbjct: 496 LVGRALVVTASIGIALFPHDGTDVTTLQKHADLAMYHAKRDRRSVRRFQPVLGDAALARL 555

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++DL  A++  EL L Y PI+       V +EAL++W HP  G +    F+ +AEE  
Sbjct: 556 ELEQDLRAALDRDELRLHYQPIVASDTLAPVAVEALVRWQHPTLGLLPPGRFVPVAEESD 615

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           ++  +  ++L    R +  WR     P + + +N+A +     +    ++  ++      
Sbjct: 616 LMVGVGEWVLRAACRQLQVWRA--RWPDLRVSVNVAPRQFAQPDFAAFVERTLAAHDLDA 673

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES VM +          L + G+ L +DDFGT  S +S L  +P   +K + 
Sbjct: 674 GALELEVTESAVMDDHG--MPQYEALLRAGLHLAIDDFGTGYSSMSRLFQLPAQVLKIDR 731

Query: 886 SLMTGS------TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           SL+T              I+RS+I  A+     ++A+ +  E  ++ L    CD +Q   
Sbjct: 732 SLITDLVAPREGHRSSRPIVRSLITFARESGLQVVAEGVEHEEQLQTLRAWQCDRVQGYF 791

Query: 940 VASPLGFNSILKLLKER 956
           VA P     +   L+  
Sbjct: 792 VARPAPPEELEVWLERH 808


>gi|284991508|ref|YP_003410062.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284064753|gb|ADB75691.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 517

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 128/436 (29%), Positives = 216/436 (49%), Gaps = 7/436 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   +   AF D LTG+ NR  F DRL   L  +A        V+ +D+D +K +ND 
Sbjct: 67  RRTEADLATLAFSDVLTGLANRALFTDRLELALRRTARSGG-EVAVVFLDLDGFKAVNDS 125

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG A GD ++  +   +   ++  D LARL G+ F I++       +    A     ++A
Sbjct: 126 LGHAAGDRLIREVGTLLQSAVRSEDTLARLGGDEFAILVERSPGVEEATRIAERALAALA 185

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSF 700
            P++L  + +TV+ASIG A+      T+S +L++A+ AMY AK  G     V + ++ S 
Sbjct: 186 GPVDLGGQRVTVSASIGIAT-GDVAATASSLLRDADNAMYWAKGAGAGRYVVFNPQMRSA 244

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R  ++ DL  AV+  +  LVY P++ L  E + G EALI+WDHP  G +   +F+ +
Sbjct: 245 AAERRQLETDLWAAVDGEQFRLVYQPVVDLGSERVTGFEALIRWDHPVLGVVLPEQFLPV 304

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALIS 819
           AEE+ ++  I  +++ +       WR        + + +N++   L    L   ++  + 
Sbjct: 305 AEEIGLVPDIGRWVITQACAAAAGWRRDHPTAAGLSMAVNVSPSQLGSPGLLADVRTALE 364

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +   PS + L  +ESV++ +P  +   L  LR +G+ + LDDFGT  S LS+L     D
Sbjct: 365 ASGLPPSALVLELTESVLVRDPVLAAERLHELRSLGVKVALDDFGTGYSSLSHLRQFAVD 424

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    E     AILR +I +   ++  I+A+ I  E    +L        Q 
Sbjct: 425 ILKIDRSFVGSIDEAEAMPAILRGLIDLGHTLDLQIVAEGIELERQRTQLRDGQVGLAQG 484

Query: 938 SHVASPLGFNSILKLL 953
              A+PL       LL
Sbjct: 485 YLFAAPLEHTDAELLL 500


>gi|78047538|ref|YP_363713.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035968|emb|CAJ23659.1| putative sensor protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 693

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 209/433 (48%), Gaps = 7/433 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G A+GD +LV
Sbjct: 261 LHDPLTRLPNRILLHEHLVQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHALGDRLLV 319

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+ 
Sbjct: 320 VVAERLNAHRRAHGSLARLGADEFV-LVADIADPEDAAALAAHLVQALAVPFLVANHELR 378

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           +++SIG A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L
Sbjct: 379 LSSSIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQEL 438

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  + 
Sbjct: 439 PRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLG 498

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +  R +  WR   +     + +N+++  L    L + +   +S+   +P ++ L 
Sbjct: 499 SWVLRQACRQMRDWRQAGHG-DWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLE 557

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +   
Sbjct: 558 ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAM 617

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     
Sbjct: 618 DGSAEDIAIVAAVVALAHTMRLQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERF 677

Query: 950 LKLLKERFPLVKN 962
           +  +  +    + 
Sbjct: 678 IATVVAQRDGPRR 690


>gi|149907873|ref|ZP_01896541.1| hypothetical protein PE36_19435 [Moritella sp. PE36]
 gi|149808879|gb|EDM68810.1| hypothetical protein PE36_19435 [Moritella sp. PE36]
          Length = 786

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 201/439 (45%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ  + + +    + D+LT +PNR S L ++   L  S         +++ID+D +K+IN
Sbjct: 342 EQVNNQQELERLVYVDHLTQLPNRVSLLKKINAELAHSQ----TPFALVLIDLDNFKRIN 397

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L+ +  ++       +I+ R  G+ F  IL       ++      + + 
Sbjct: 398 DRFGHDTGDMLLIDIANKLTTQCAADEIIGRWCGDEFICILHYPT-QQQLETRVKRILQL 456

Query: 641 IAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHA--KHRGGNHVESFRV 697
           IA PI L E   T     G A         + ++++ A+LA+  A        +     +
Sbjct: 457 IAEPIQLGEVRHTCPVRCGIALSQDSDDKDAGQLIRYADLAVAKAYEHSANRINFFVPEM 516

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +R  ++ +L  AV   EL L Y PII L   +   +EAL++W HP  G +   EF
Sbjct: 517 EKAGRERFELEVELRDAVSRGELCLHYQPIINLKTGQYELVEALVRWQHPTRGMVPPVEF 576

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  I  +++    R +  W   A +    + +N++     D EL E +   
Sbjct: 577 IELAEKTGLIIGIGRWVVCEAIRQLALWHRGAVLSINEVAVNLSPVQFQDPELIEIITLA 636

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++       + L  +ESV++   + +   + + R +GI + LDDFGT  S LSYL  I 
Sbjct: 637 LAEHEVEAQFLTLEITESVLLDGDDEALAKIAQFRAMGIKIALDDFGTGYSSLSYLSRIQ 696

Query: 878 FDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + S +      +   ++ +II M+ ++   ++A+ I     ++ L    C+Y Q
Sbjct: 697 LDKIKIDRSFVNKIGNTRDEILIETIIAMSHSMNLAVVAEGIEELSQLEFLASNKCEYGQ 756

Query: 937 DSHVASPLGFNSILKLLKE 955
             + + PL    I+  ++ 
Sbjct: 757 GYYFSKPLPAADIVTFIQN 775


>gi|149376224|ref|ZP_01893988.1| EAL domain protein [Marinobacter algicola DG893]
 gi|149359421|gb|EDM47881.1| EAL domain protein [Marinobacter algicola DG893]
          Length = 578

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 214/418 (51%), Gaps = 6/418 (1%)

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F DRL   L  +      R  ++ I++D ++  N+  G    D +++ L  R+ + 
Sbjct: 155 NRDLFFDRLQQALLRAER-GGQRLALLHINLDDFRSFNESFGYQKSDQIMLKLAERLRQN 213

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D L R+ G+ F II+    +SL I      +  ++  P +L  + + V+AS+G A+
Sbjct: 214 LRRVDSLMRIGGDEFAIIVEKVEDSLDITQIIRKLVTAMGEPFSLDGQNVVVSASLGVAT 273

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSEL 720
           +  +  +   +L+ A  AM+ AK   G     +          ++ ++ DL  A+  +EL
Sbjct: 274 YPEAGHSPENLLRRANRAMFEAKRDPGTSYRFYDRQLHITAGYQLRLEADLRNALRGNEL 333

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y P I L  EE+ G+E L++W+HP+ G +   EF+ +AE   +I  I  +++E+  +
Sbjct: 334 EVYYQPRIDLASEEVRGVECLLRWNHPERGLVGPDEFIPVAERSGLIVPIGYWVIEQACK 393

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +    D    P +   +N++ +   D ++ E +  +I       S ++L  +ES +M +
Sbjct: 394 RLQECAD-LGHPGLVFAVNLSFRQFHDRKMTETIFRIIFNANVDTSLLELELTESAMMHD 452

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
           PE ++  L  L ++GIS  LDDFGT  S LS L ++P   VK + S +     +     I
Sbjct: 453 PEYAQRCLRELNQLGISFALDDFGTGFSSLSNLQHLPIALVKIDKSFVQDLGQSADAEHI 512

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +R+II +A +++ +++A+ +  E  ++ L +  CD IQ  + A P+ +N +++ L  R
Sbjct: 513 IRAIISLAHSLQISVVAEGVETEGQLEFLRQQHCDEIQGYYYARPMPWNDLVQFLDNR 570


>gi|220933432|ref|YP_002512331.1| signal transduction protein containing a membrane domain an EAL and a
            GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994742|gb|ACL71344.1| signal transduction protein containing a membrane domain an EAL and a
            GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1076

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/577 (20%), Positives = 237/577 (41%), Gaps = 23/577 (3%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +L     +Q           I    + R +  + G    +   D         P    + 
Sbjct: 501  LLKALGDLQVSERRQTELLAITRREQSRMAALLSGMSIGILFEDTNGRVEYVNPAFRRMW 560

Query: 439  GL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWM 495
             +     + G     +   H   R          + +      +   F V   D +   +
Sbjct: 561  AIGEPVDLIGRPSREV-LKHSTHRLARPDHASRHILHVLDTHEISERFEVDLYDGRV--L 617

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                 P+++ +G +L  + I  DIT ++++ + ++  A  D LTG+ NR  F + L  ++
Sbjct: 618  TQLSYPVADPDGPVLGRLWIYEDITRERQTAQQLIYMAQHDALTGLYNRHRFQEHLDRMI 677

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
              +  +D+ R  ++  D+D++K IND  G   GD VLV     +  L++  ++ ARL G+
Sbjct: 678  SSAQRNDS-RFALLYFDLDEFKYINDTFGHRAGDTVLVRAAGEVSSLVRSGEVFARLGGD 736

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEML 674
             F  +L    +  + +  A  + ++I+  P       + +TASIG A +        +++
Sbjct: 737  EFA-VLAEIRHDDEPSQLAERIARAISAIPFRFRGSNLRLTASIGIAFFPEHGDNVEDLV 795

Query: 675  KNAELAMYHAKHRGGNHVESF----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
             +A+ AMY AK  G N    +      S     R+  +  +  A+    L L +  I   
Sbjct: 796  AHADTAMYQAKSNGKNTWSLYDPSRNHSKAMMARMTWRGRIDQALREESLELHFQGIYST 855

Query: 731  MDEEIVGLEALIQWDHPKWG--NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
             D E+  +E L++   P  G   I   +F+ +AE+   I  I+ ++L +    +      
Sbjct: 856  ADGELSHVETLVRMRDPADGERLIMPGQFIPVAEKTGQILEIDRWVLRQSIGLLAKHPKL 915

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                   + +NI+ +   +  L + +Q L+ +    P R+ +  +E+  +   + ++  +
Sbjct: 916  RA-----LAVNISGRSFDEPGLPQYIQDLLQRHDVEPRRLIVELTETAAVSEMQDAQRFI 970

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
              L + G  + LDDFG+  S  +YL Y+    +K +G  +          A ++++I +A
Sbjct: 971  EALHQTGCLIGLDDFGSGFSTFAYLKYLGVQILKIDGMFIRDLPNNRDNQAFVKAMIDVA 1030

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            K ++   +A+ +     +  L   G D  Q  H+  P
Sbjct: 1031 KGLDKLTVAEFVEDAETLAMLREFGVDMAQGYHLDRP 1067



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 107/374 (28%), Gaps = 41/374 (10%)

Query: 192 RGIIIGVASLLAIFLTIFYMVN--RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGE 249
            G+I  V  L    L +   +   + + L  +  + W+    +       ++ V L  G 
Sbjct: 9   LGLIYQVYGLSFFVLGVTAFLLPRQDANLPFSRHLGWLAAFGMLHGILEFTEWVRLQEGA 68

Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWH-----AKVGYITFSGIACIAILFCMSFYYP 304
                  +++ L  S I      L + R         V            +         
Sbjct: 69  ADGLIHSAQLLLFVSFIPL----LEFGRRCMADLWPTVWLDPRLIYGAAGLAVLGLVLLS 124

Query: 305 MV----TASIARITLASIVLYYTYFIIYHGMK------------GYERAVLLIPAWILIF 348
                  A+ AR  L +         ++   K              + A +   A  L+ 
Sbjct: 125 TQPLEGLATGARYFLGTPGALLAALALWTSRKPAPHRLDTSAGFRAQPAWIGTLAGALMV 184

Query: 349 IWFIGLWMAIT-----KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
              +  ++ +T       L       A+ G  V +   +        L       G  S+
Sbjct: 185 YGLLTPFLTVTSQGLPPWLPTQWDFLAITGFPVQLARSLCAIAACIALMALVRQAGSLSN 244

Query: 404 GERQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLASGSMHGP-IRNWLPYIHI 458
            +   +   G+ D  + +    D     V    ++  + G        P +       H 
Sbjct: 245 EDLLRVL--GTIDG-FVYRSKNDPQWSLVYLAGNVEELSGYRPMDFLDPEVVTMGSLTHP 301

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            DRD     +   +  RR      +R+   D    W+  R + + + +G++L   G   D
Sbjct: 302 EDRDRVWHEVQQALNQRR-SFSLSYRIVTRDGTPRWVQERGQGIHDEHGNLLFLQGHVID 360

Query: 519 ITEQKKSLEGILCN 532
            +    + E +   
Sbjct: 361 ASRLVAANEDLRHQ 374


>gi|309390128|gb|ADO78008.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Halanaerobium praevalens DSM 2228]
          Length = 782

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 215/439 (48%), Gaps = 11/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K +E I   ++ D LTG+PN   F   L   L       N +  +  I ID +K IND  
Sbjct: 345 KMMEVIKDLSYNDALTGLPNINIFKKELNKYLSQLK---NEKLYLCAIGIDDFKSINDSF 401

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSI 641
           G  +G+ +L  L +R+   L+   +++R+ G+ F   L +++ +   +I +    + + I
Sbjct: 402 GHDIGNKILKKLAQRLTNQLEAEYLVSRV-GDEFYFYLTADHLAKKAEIRNRLNEILEVI 460

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                +    I + +S+G + +         ++KN+ LAM+  K    N +  + ++  R
Sbjct: 461 NNNYFIENNIIYLKSSLGVSIYPDDHQNIDILIKNSSLAMHAVKKSSSNKLAFYSLNIDR 520

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S   +  ++  L  A+E  E  L Y       + E VG E LI+WDHP+ G IS   F+ 
Sbjct: 521 SISEKKRLENQLATALERDEFLLYYQGFNAGKEGERVGFETLIRWDHPQKGLISPGVFIP 580

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE   IK I  ++LE+  +D+     +      ++ +NI+ +  +D +  + +Q ++ 
Sbjct: 581 LAEENGFIKEIGNWVLEKGCQDLYKLNQKF-KSDYYLSVNISPEQFIDRDFLKTVQNVLK 639

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           KT   P  ++L  +E   + N   +  +L +L  +G+   +DDFGT  S L+Y+      
Sbjct: 640 KTGVKPKNLELEITERTTVENIGYTIEVLDKLNSLGVKTAIDDFGTGYSSLNYIKEFKIH 699

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S +    +     AI++SII +A N+   ++A+ +  +   ++L + GCD IQ 
Sbjct: 700 TLKIDKSFIDYFINNANNRAIVKSIINLAHNLNLRVVAEGVETKKQAEKLNQAGCDIIQG 759

Query: 938 SHVASPLGFNSILKLLKER 956
            + + P     ++K L+++
Sbjct: 760 YYYSYPSPLEDVIKELEKK 778


>gi|297537996|ref|YP_003673765.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257343|gb|ADI29188.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylotenera sp. 301]
          Length = 798

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 130/455 (28%), Positives = 238/455 (52%), Gaps = 11/455 (2%)

Query: 503 SNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  G++ R     ++ I+ ++KS+      A+ D LT +PNR SF+ RL   L+ +   
Sbjct: 334 KDELGELSRSFSSMSEAISTREKSISR---LAYFDELTHLPNRTSFMLRLNKALEEAEVT 390

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              + T+ +++++++K+IN++LG   GD++L  + ++I    +  D +AR++G +F +IL
Sbjct: 391 KQ-QLTIFILNLNRFKQINNILGHDAGDEILRVVAQKIKATAREQDFVARIAGVQFAMIL 449

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               + + +   A  + KS   PI +  + + V+ASIG AS+       +++L  AE+AM
Sbjct: 450 PDTTSEVGL-SLANDLSKSFESPILISMQSVDVSASIGIASFPKHAKNEAKLLTRAEMAM 508

Query: 682 YHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           Y AK  R G  V         S  + +  +L  A+  ++L +   P I +   ++  LEA
Sbjct: 509 YAAKASRVGTTVFDKSYDINSSTNLSMASELKNAIAGNQLIMYVQPKIGIATSKLTSLEA 568

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G I   +F+  AE+   I+ I+ +ML   AR    W       P  I +NI
Sbjct: 569 LVRWKHPEKGFIFPDQFIPFAEQTGYIQLISQWMLNEAARYSQIWNTMNLHYP--IAVNI 626

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++DL+D EL E + A+        S + L  +ES +M +P R+   L +L  + I L++
Sbjct: 627 STRDLIDQELPEKINAIFKTYNIDDSSLSLEITESSIMDDPVRALATLDKLSGMNIKLSI 686

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+YL  +P + +K + S +      E    I++S I +  N+   ++A+ I
Sbjct: 687 DDFGTGYSSLAYLKRLPVNELKIDKSFILKMEQDESDKKIVQSTIDLGHNLGLKVVAEGI 746

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             ++    L +MGCD  Q  +++ P+  +  +  +
Sbjct: 747 ENQVVWDLLRKMGCDSGQGYYMSKPMPASDFVSWI 781


>gi|238024841|ref|YP_002909073.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
 gi|237879506|gb|ACR31838.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
          Length = 693

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/693 (21%), Positives = 276/693 (39%), Gaps = 76/693 (10%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           V   T         +   +   P+    +      ++ +  +Y  ++   +   RA  + 
Sbjct: 49  VAMGTGIWSMHFIAMLAFTLPIPLGYDLVETGYSLALAIVASYLALFVTTRR--RASFVH 106

Query: 342 PAWILIFIWFIGLWMAITKRL-----DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
            A     +      M  T         +   QP      VLI I+     +         
Sbjct: 107 LAASGTLMGLGVAGMHYTGMAAMRMRPDIDYQPGWFAASVLIAIVASMAALAIARRLRSV 166

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL---------GLASGSMHG 447
            +         +  V+ +G                   AT L         G+ S  +  
Sbjct: 167 RRRAVVRARAGAALVMAAGI--------SGMHYAGMAAATFLPGSICGAAAGINSAWLAT 218

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +  +   I         T+L S +  R  RL                      ++N NG
Sbjct: 219 TVSLFTFVI------LIATLLLSRIDARNSRL-------------------ASTVTNLNG 253

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +I+R                     A  D LTG+PNR +   R+   +D +    +    
Sbjct: 254 EIVR--------------------LATLDTLTGLPNRSTLTHRIAEAIDTARRRHSG-FA 292

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ +D+D +K IND LG ++GD VLV+ ++R+   ++  D +ARL G+ F ++     ++
Sbjct: 293 VLFMDLDGFKAINDSLGHSIGDRVLVTFSQRLRGCVRSFDTVARLGGDEFVVLAERIGSA 352

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +    A  + +        L+  + VT SIG A +     T   +LK+A+ AMY AK  
Sbjct: 353 SEARVIAETVLERTRDGAWSLDEPLQVTPSIGIALYPRDGETVDALLKHADAAMYEAKRG 412

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F   ++      + I++ +  A+ +    L + P  R     + G EALI+  
Sbjct: 413 GRGAYRFFEVGMNDAALRTLQIQKAVHEALASGYFSLHFQPKFRSDTRALTGAEALIRLR 472

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HPK G ++  +F+ IAE    I AI  +++    R I  WR     PP+ + +N++++ L
Sbjct: 473 HPKLGTLAPLDFIPIAERSGQIVAIGYWVVRETCRHIREWRQAGL-PPMKVAVNLSTRQL 531

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              EL   M  ++ +   +P +I    +E++ M + ER+ + +   ++ G  + +DDFGT
Sbjct: 532 AQPELAAAMLQIVRQEQVAPQQIIFEITETMAMQDAERTIVAIRDFQQGGFEIAIDDFGT 591

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
             S L+YL       +K +    +G     ++  AI+ +II +A ++   ++A+ +    
Sbjct: 592 GYSSLAYLQRFRVKQLKIDRFFTSGLDRHGKEGAAIVSAIIALAHSLGMDVVAEGVETVT 651

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +L  + CD +Q   +  PL  ++  +L+++
Sbjct: 652 QRDKLETLRCDEMQGFLLGRPLAADAFAQLVRD 684


>gi|53717465|ref|YP_105413.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|67643727|ref|ZP_00442471.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|124382703|ref|YP_001024617.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126447769|ref|YP_001078949.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|167002113|ref|ZP_02267903.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|254174526|ref|ZP_04881188.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254204109|ref|ZP_04910468.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|254209086|ref|ZP_04915433.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254355635|ref|ZP_04971915.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|52423435|gb|AAU47005.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
 gi|124290723|gb|ABM99992.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126240623|gb|ABO03735.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|147744993|gb|EDK52074.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|147750309|gb|EDK57379.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148023728|gb|EDK82790.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|160695572|gb|EDP85542.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|238525126|gb|EEP88555.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|243062177|gb|EES44363.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
          Length = 688

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 201/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR +  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRHTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|330888529|gb|EGH21190.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 683

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++        + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQAKIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGEQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLRDALPGNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETLEQEAYIVTQGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|158333773|ref|YP_001514945.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Acaryochloris marina MBIC11017]
 gi|158304014|gb|ABW25631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Acaryochloris marina MBIC11017]
          Length = 1197

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 120/583 (20%), Positives = 244/583 (41%), Gaps = 23/583 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V+ ++       +      +     +     +++  D+        P  + + G++  
Sbjct: 324 VGVLTNIADFKRLEENAQQQIDHYQTLLADISIVIFKTDLAGHWTYLNPAWSKLTGISLE 383

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G       ++H +DR   +    + V        +E R         W+++    + 
Sbjct: 384 DSLGKPI--WDFVHPDDRPGLQEAFHNLVEQTSESYNHELRFFCQQGGCAWVVVHNHVIR 441

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G  +   G   D +E+K++ + +L +A  D LT +PNR  F+DRL           +
Sbjct: 442 AEDGTCIGTAGTLEDASERKQTEQALLHDALHDGLTQLPNRVLFMDRLEQACRSFQRHPD 501

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D+D++K IND LG  VGD +LV++  R+   L+  D +ARL G+ F ++L +
Sbjct: 502 EIFAVLFLDLDRFKIINDTLGHMVGDQLLVAVAHRLQTCLRPEDTVARLGGDEFTLLLPN 561

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            + +      +  + +S+  P  L   E+ +T SIG A   + +    ++L++A++A+Y 
Sbjct: 562 IDQAEDAMHISDRILQSLKEPFTLDHTEVFITVSIGIAMSGNPEQKPDDLLRHADIALYR 621

Query: 684 AKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      F          +V I+ ++  A+++ E  L   P+  L + E+ G    
Sbjct: 622 AKANGKGCYAVFSPEMPLQPLAQVQIETEVRQALDDEEFRLYCQPVHSLENNEVWGFTLQ 681

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           + W HP  G + S EF+    +  + +++  ++L +    +  W+      P+ I + ++
Sbjct: 682 MYWQHPHKGVLPSFEFLPSVTDTGLQRSLGWWVLRKACAQLHQWQRMPTEQPLSIWVAVS 741

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT-- 859
              L  +      + L+ K   +P  + L    S+     ++    L  +   G+ L   
Sbjct: 742 EAQLTSSNFLSKFERLLEKHDINPQHLVLELPPSLWPRPSKKVLAHLQDVHSRGVQLARV 801

Query: 860 LD--DFGTKCSLLSYLG---YIPFDTVKFNGSLMTGSTEKRIAILRSIIP---MAKNIET 911
            D  DF        +L     +P D VK + +L+    ++    L SI     +A + E 
Sbjct: 802 QDNQDF-------DWLSGEESLPVDWVKLSSTLLGNLDQQGY--LESIHSLFILAASAEI 852

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++A  I        ++ + CDY Q  +   P+  ++    L+
Sbjct: 853 KMLADGIQTPKQRLLMSALKCDYGQGHNFTDPIPAHAADPWLE 895



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 6/202 (2%)

Query: 337 AVLLIPAWIL--IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
           A  L P+ +L  +    +     +   L     +      ++ +      + +  ++   
Sbjct: 148 ASYLPPSALLKTVLQLPLATNHTVLGMLTLGSPELLPDANMLCLWGKQVASFLAWLIQAE 207

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWL 453
             +    +  ER SL         +DWDI  D  +  T                 +  WL
Sbjct: 208 RANTCFNNVQERFSLVASSFRGCFYDWDIAIDSILQFTKTNEEQAAKPHAPRQFSVPEWL 267

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             IH  DR    T++D        + + E+R + +D Q   M  R     ++ G  +R +
Sbjct: 268 DQIHPEDRHLLETLIDQDFQGE-DQFELEYRWQ-SDGQPF-MCDRGVIQRDAQGVPIRVV 324

Query: 514 GIANDITEQKKSLEGILCNAFQ 535
           G+  +I + K+  E        
Sbjct: 325 GVLTNIADFKRLEENAQQQIDH 346


>gi|254383220|ref|ZP_04998573.1| membrane associated phophodiesterase [Streptomyces sp. Mg1]
 gi|194342118|gb|EDX23084.1| membrane associated phophodiesterase [Streptomyces sp. Mg1]
          Length = 1007

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 154/819 (18%), Positives = 305/819 (37%), Gaps = 69/819 (8%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAM--AWVVLGYISIDFGFLSKLVNLPSG 248
               +IG + L   +        R++    T ++  A + L Y  +D   +S ++ L   
Sbjct: 175 LDSWLIGGSLLTLSWSLALANAARTAQSGATGSVPSAAISLAYPLLDIALVSMVLVLHFR 234

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
                R+    A+++  +  L   L        +     SG    A  F  S        
Sbjct: 235 RSEGNRSAVNTAIAALALTVLSDALFT---SPLLSDGYQSGQLLDAGWFAGSLLLAYAPW 291

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
              R+        +      H          L P           L+  +  R  + ++ 
Sbjct: 292 GARRLHPLPPAAPHPPAERPHSRPITGSLPALTPYLAAAVCTLGILYNVVDGRKVDRMVV 351

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
               G  V++ ++I   ++  +L     +Q +          V GS D++          
Sbjct: 352 --FTGCTVVLALVIRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPTGTLH 407

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRV 485
             +P  A + G  +  + G        IH  D       +  F+          + E R 
Sbjct: 408 YVSPAAAGVYGREAEELVGS--ELASLIHPEDLGRVVHEVRRFLAAPPTEEPTTRIECRF 465

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           ++   ++  +   +             I  + D+TE+ +    +  +A  D LT +PNR 
Sbjct: 466 KSGGGEWLNVESTVNRHQG------GLILNSRDVTERVRLQAQLQHSAEHDPLTDLPNRA 519

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  R+   L       +    V+ ID+D +K +ND +G   GD++LV   RR+ + ++ 
Sbjct: 520 LFTRRVRQAL-TGRRAGDHSTAVLFIDLDGFKAVNDTIGHQAGDELLVEAARRLQDSVRA 578

Query: 606 PDILARLSGNRFGIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTASIG 659
            D  ARL G+ F  +++ + +        ++ + A  +R +++ P  +   E+ V ASIG
Sbjct: 579 GDTAARLGGDEFAALILGDGSRDRSAREYQVHEIADRLRTTLSQPYRIAGSEVRVAASIG 638

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVEN 717
            A      IT S++++NA+LAMY AK  G + VE +             +   L  A+  
Sbjct: 639 VAFADP-GITPSDLMRNADLAMYRAKAGGKDRVELYAPQMQAEVARKAELAGRLRTALHE 697

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC------------ 765
            E  L++ P++ L   E+  + A  +W   +    + +EF+ +AE               
Sbjct: 698 GEFALLHQPVVSLATGEVTAVAAQARWRSAQGILFTPAEFLRVAEHSEASVAHGREQAPG 757

Query: 766 ---------------------MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                                    +  ++LE             +  P  + + + ++ 
Sbjct: 758 RDARGGAGPGAGGAGGCPDTARAAELGRWILEEAVGHAAERHRVGHDVP--VAVRMTAQR 815

Query: 805 LLDNELC-EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           LLD  +    ++AL+++       + +  ++S      +     L  LR++G+ + LD F
Sbjct: 816 LLDRAVPMASVEALLNRHGLPSGALVIELADSDPRVPFDELERRLAALRRLGVRIALDGF 875

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + +S L  +P D +K +  L+ G  E      I   ++ +A ++    +A  +   
Sbjct: 876 GSGYAAISALRRLPVDILKLDRGLVEGVVESARLHKITAGLLRIANDLGMQSVADGVDLP 935

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPL 959
             +  L  MGC + Q    + PL    + + L++  FP+
Sbjct: 936 EQVMALRAMGCTHGQGLAFSGPLDEYRLRRALVRSTFPV 974


>gi|326795280|ref|YP_004313100.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546044|gb|ADZ91264.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 664

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 116/534 (21%), Positives = 235/534 (44%), Gaps = 21/534 (3%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            + +   P      G  +  +     +       ND     + +          +   F 
Sbjct: 144 GETLYMNPVARRTFGSPNTDLSDRFYD------PNDYLKLMSDIKR--TGDGTCISKVF- 194

Query: 485 VRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
              +  +  W  I  R   +  +G     +  A D++E K +       A+ D LT +PN
Sbjct: 195 --TSTGE-KWHEIIARSCHDPISGKPS-VLVSATDVSELKAAEARAHQIAYTDALTKLPN 250

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+S       ++  ++    L  ++  +D+D++K IND LG   GD VL+ +  R+  ++
Sbjct: 251 RRSLTRIFERVVKQASQKGRL-LSIQFLDLDEFKAINDTLGHKQGDKVLIEIAHRLRSMV 309

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           K  D + RL G+ F + +   +        +  +  +++ PI L +  I +T SIG A +
Sbjct: 310 KVDDEIVRLGGDEFLLFIQ-ADEQSDAIRLSDEVLSNLSHPITLEDANIKITPSIGIAFY 368

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELY 721
                T   +++ A++AMY AK  G N    F+            + + +     + +  
Sbjct: 369 EKEGDTIDTLMQCADIAMYCAKSAGRNQHCVFKSDMKSRLDREHNLIKSVKHYPLSEQFR 428

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L + P   L  ++I  LEALI+W+HP +G +   +F+ + E+  +I A+  +++E   + 
Sbjct: 429 LYFQPRFNLKTKQIHSLEALIRWEHPMYGMLYPEDFIPLLEKSNLIDAVGSWVIEETIQQ 488

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           + +WR ++    + + +N++   L   E  + +   + +    P  I+L  +E+ +  N 
Sbjct: 489 LCNWRQRSIF--VSLSVNVSINQLHSEEFSKFILDNLEREQLPPESIELELTETSMFKNS 546

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRS 901
             ++  +  L+  GI + +DDFGT  S L+ L  +  D +K + SL+     K   I+  
Sbjct: 547 PAAQRNIENLQAAGIKIAIDDFGTGYSNLARLTQMSVDCIKLDKSLIRSL-PKNEKIVGK 605

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I +   +  +++A+ I  +       ++GC+ +Q   +A  L  N + K L +
Sbjct: 606 VIEICHAMSASVVAEGIETQEMAYLCEQLGCEELQGFFIAEALQPNDVEKFLSD 659


>gi|296116909|ref|ZP_06835512.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976549|gb|EFG83324.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 770

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/487 (24%), Positives = 223/487 (45%), Gaps = 30/487 (6%)

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKK---------------------SLEGILCNA 533
           ++    P++  +G     + I    +  K+                     + + I   +
Sbjct: 277 VMCVAAPVTTHDGTPAGVLAIYLRDSAMKEWAQAVMQAATPFCTLALGRDAARQRIAQLS 336

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+ NR S    + T+        +   TVMV++ID ++ IN+ LG    D+ L 
Sbjct: 337 ERDTLTGLLNRSSLNRYIETMTSDRQ---DAVFTVMVLNIDSFRDINNALGHVHADNFLR 393

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+ +L     I++R SG+ F +++          + A  + ++IA PI + +  IT
Sbjct: 394 EVAKRLQKLSAGRFIISRSSGDEFIVVVPHCP-RAVAMEQATRIIRTIAEPIEINDSAIT 452

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG--NHVESFRVSSFRSDRVMIKEDL 711
           ++ SIG A +         +L +A++A+  AK+ G           +    DR+++   L
Sbjct: 453 LSVSIGIACFPDDGPDGESLLGHADVALQQAKNEGRGTYKFADSSKNRLAQDRLLLGSAL 512

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             +V    L+L Y P I  M   + G+EAL +W HP  GNI  S F+ +AEE   I AI 
Sbjct: 513 HESVSKGLLHLHYQPQIDTMTGTLYGVEALARWHHPHLGNIFPSRFIAVAEETGQIAAIG 572

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            + L+   R +  W       P  + +N+++    D+ + E +  L+     +P R+ + 
Sbjct: 573 RWSLQEACRQMGQWDRDGIHVP-TVAVNLSAAHFGDHSVPEYITGLLRTYDLTPDRLTVE 631

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG- 890
            +E+V+M + + +  +L  +R IG+ L++DDFGT  S LS L  +P   +K + S +   
Sbjct: 632 ITENVMMESGKATHDVLQAIRNIGVGLSMDDFGTGYSSLSRLTRLPLTEIKIDRSFINDF 691

Query: 891 -STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  A+  ++I +   +  T++ + +      + L  + CD +Q    A PL  + +
Sbjct: 692 EHDTNAQAVTTAVIGIGNRLGMTVVTEGVETVQQRQLLEDLKCDVMQGYLFARPLPADEL 751

Query: 950 LKLLKER 956
            K ++ R
Sbjct: 752 EKWIRAR 758



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 1/125 (0%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDR 461
           D +   LA+    + V   +   D V        + GL+   + G  +R  +P  +  D 
Sbjct: 47  DLQFSDLALQHVPEAVVLINDRNDIVFYNDAAQRLWGLSREEVMGRNVRCLVPVAYRADH 106

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           D+F         +       +     A  +     + +  +       + Y+GI  D+T+
Sbjct: 107 DSFIARHREDGSHHNVGTTRDVEFVTASGEARRGRLSLSQVVRPGVPGVFYMGIMTDVTQ 166

Query: 522 QKKSL 526
           ++ + 
Sbjct: 167 ERLAE 171


>gi|76819816|ref|YP_337542.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|167819254|ref|ZP_02450934.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 91]
 gi|167914364|ref|ZP_02501455.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 112]
 gi|254193156|ref|ZP_04899591.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254263037|ref|ZP_04953902.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254300138|ref|ZP_04967584.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|76584289|gb|ABA53763.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|157810431|gb|EDO87601.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|169649910|gb|EDS82603.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|254214039|gb|EET03424.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 688

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 201/435 (46%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR +  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRHTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|312621514|ref|YP_004023127.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201981|gb|ADQ45308.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 571

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 245/558 (43%), Gaps = 26/558 (4%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER    ++ S    W +DI +  V  +          S  ++G +      +  ++  + 
Sbjct: 22  ERLVQ-LIKSERGFWLYDIEKKGVYISNGFE----YISIQINGSVNFIQDVMTESEFKHL 76

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK- 523
           + ++   +   +       R++  D    W+ +    + +   + L+ +G   D+T    
Sbjct: 77  KKLVRDSIEKGQNGFSS--RIKLKDG--RWIFVCATILYSEQ-EPLKIVGTFEDVTPHVS 131

Query: 524 ---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
              +    I   A+ D +TG+PNR    + L   +D S  D++    V+ I++  +  IN
Sbjct: 132 CDLRLSRYIELIAYYDEITGLPNRNFLNEVLREKIDKSKKDNSG-FWVIFIEVSNFGYIN 190

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++ G +VGD+ L ++T  I + L       R  G+ F ++  +      +A     + + 
Sbjct: 191 ELFGHSVGDEFLKAITFEIKKFLPRDWTFCRFGGDEFVVLTSNIQ-RTSVAMVVENLIER 249

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH------VES 694
            + P N++ + +    ++G + +      +  +LKNAE+A+  AK  G ++         
Sbjct: 250 FSRPWNVMGKWLYANINVGISGYPQDGEFADTLLKNAEIALTEAKKHGRDYGKSQYEFYK 309

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      RV I+ ++   +   + +LVY P +      +VG E+L++W+  + G ++ 
Sbjct: 310 ISMEEEILRRVEIESEISRGILERQFFLVYQPKVSYDGRTVVGFESLLRWNS-QKGILTP 368

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ IAEE  ++  +N  +L+ + +DI  +  Q     I + +N++ K+     +   +
Sbjct: 369 DKFIQIAEESGLVYDLNRLVLDIVCKDIK-YIKQKTSKTIPVAVNLSGKEFAMYNMIGVL 427

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +      P  I++  +E  ++ N E ++ +   L + GI +++DDFGT  S    L 
Sbjct: 428 NERLKTHNLLPEDIEIEVTERAILNNVELTKQIFNSLHEKGIKISIDDFGTGYSSFELLL 487

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K +   +           I+++II MAK +    +A+ +  +   + L  +GC
Sbjct: 488 QLPIYALKIDKKFIDKIQLFGNEYVIVKNIIYMAKEMNLKTVAEGVENKEQYEILRELGC 547

Query: 933 DYIQDSHVASPLGFNSIL 950
           D  Q  + + P+    ++
Sbjct: 548 DQFQGYYFSKPVNIEEVV 565


>gi|294142460|ref|YP_003558438.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328929|dbj|BAJ03660.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 824

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 218/436 (50%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PN+      L   +       + +  +M +D+D++K+IND L
Sbjct: 371 EYTCELERLAMLDTLTGLPNKAMLNHELKKTIACVGRIHD-KIALMFLDLDEFKRINDTL 429

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD++L  + +R+   ++  D + R  G+ F I+L    +   +      +   +  
Sbjct: 430 GHSQGDELLKIVAKRLNHSVRAMDTVFRQGGDEFLILLRGIRSEEDVRKVIHKIFACLQQ 489

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           PI L   ++ VT SIG A   S+ + + E++K A+LAMY AK  G ++   F        
Sbjct: 490 PIVLGHHKLIVTTSIGVAYCESNNVRAEELIKYADLAMYQAKDAGRSNYRVFTQEMLQRA 549

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++++MI++D+  A+E  +L L   PI+ L D ++ G EALI+W HP+ G I   +F+   
Sbjct: 550 NNKLMIEQDIGAAIEEKQLSLSLQPIVSLPDGKVKGFEALIRWHHPERGLIMPGDFIPDI 609

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  +  ++LE     +    +Q     +++ +N+++K  +D  L   +Q ++SK 
Sbjct: 610 EDSEAIIQVGNYVLEEGGAILARLIEQ-GWEDLYLAVNLSAKHYMDPGLIPLVQRILSKY 668

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E  V+ N + +   +  L+ +G+ + +DDFGT  S LSYL  +PFD +
Sbjct: 669 NIPPQSLLLEVTEESVIENVDLALSSMRSLKCLGVRIAIDDFGTGYSSLSYLKQLPFDVL 728

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +    +G  E      I+ ++I +A N+  T++A+ I  +     L    C+  Q   
Sbjct: 729 KIDRCFTSGVLENSVDTHIVTTVIDLAHNLGRTVVAEGIETQEQCDFLAAARCELAQGYL 788

Query: 940 VASPLGFNSILKLLKE 955
            + P+      ++L E
Sbjct: 789 FSKPIDERKAFRILNE 804


>gi|291085320|ref|ZP_06352731.2| signaling repeat/GGDEF domain/EAL domain protein [Citrobacter
           youngae ATCC 29220]
 gi|291071603|gb|EFE09712.1| signaling repeat/GGDEF domain/EAL domain protein [Citrobacter
           youngae ATCC 29220]
          Length = 704

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 204/437 (46%), Gaps = 7/437 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +    +      D LTG+ NR      L   L  S    + +  ++ ID+D++K +ND
Sbjct: 249 LHQLNCQLEHQVHYDALTGLANRTQIDACLRDCLRQSKLHQH-QFALVFIDLDRFKVVND 307

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  +GD +L++ T+RI   L     LARL G+ F +++   N    ++     +  +I
Sbjct: 308 TWGHHIGDQLLIASTQRIYSCLDSSMTLARLGGDEFILLVPHCN-QESVSTLLTEIAATI 366

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  L    I V+ S G + +     T  E+   A++AMYH K  G N    +      
Sbjct: 367 GEPFTLYGHTIRVSLSAGSSIYPDHGSTLHELKVKADMAMYHVKQAGRNGWAIYNPEMEA 426

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                    ++L  A+E+ +  L Y P     D  + G EAL++W HP+ G +  +EF+ 
Sbjct: 427 IADTPPTFLQELAQALEHGQFELWYQPKYTAGDRSLTGFEALLRWHHPERGILLPAEFLP 486

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E+  +I  +  +++++    +  W+ Q       + +N++      +++ + +   ++
Sbjct: 487 ALEDTGLIIPVGKWVIQQACLQLYQWKSQ-GYTEWTLAVNLSPAQFEQHDIIDIVCNALA 545

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP+ + L  +ES  + N +RS  +L     +GI++++DDFGT  S +  L  +P  
Sbjct: 546 QYQLSPACLTLELTESTALKNLKRSVEVLNAFSALGITVSIDDFGTGYSNILMLKSLPAR 605

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +   ++      I+ +II +A ++   ++A+ I  E     LT+MGC  +Q 
Sbjct: 606 ELKIDRLFIKDISDNSKNTKIVATIIDIAHSMNMRVVAEGIETEAQEILLTQMGCGVLQG 665

Query: 938 SHVASPLGFNSILKLLK 954
              A PL  + I +L++
Sbjct: 666 FLYAKPLPAHKIHELIQ 682


>gi|221124338|ref|XP_002162521.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 400

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 189/391 (48%), Gaps = 10/391 (2%)

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-- 626
           M +D+D +K +ND LG  VGD++L  +  R+   ++  D +ARL G+ F ++L   ++  
Sbjct: 1   MFLDLDHFKLLNDTLGHDVGDELLQQVAYRLRNCVREGDSVARLGGDEFVVLLEGLSDNR 60

Query: 627 ---SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              + +    A  +  ++A+P +L       T SIG   +     T  ++LK A++AMY 
Sbjct: 61  TDAANQAEVVAHKILDALALPYSLRGHGYNSTPSIGIVVFMEDHETMDDLLKKADVAMYQ 120

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F        +    + +++ L ++  E  L Y   I        G EAL
Sbjct: 121 AKAAGRNTARFFDPVMQAAVTTHAELAKEIRLGLQRHEFVLHYQVQID-SQGRCTGAEAL 179

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+H   G +S + F+ +AEE  MI  +  +++E   + ++ W          + +N++
Sbjct: 180 VRWNHRVRGLVSPAHFIPLAEETGMILPLGEWVMESACQQLVEWSRNPMTAHWTLAVNVS 239

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L   E    ++  + ++     ++KL  +ES+++ + E   + +  ++++G+S +LD
Sbjct: 240 ASQLAQPEFVASVREALQRSGAPAGQLKLELTESMLVDDVEDIIVKMMAIKELGVSFSLD 299

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P   +K + S +    +      I R+++ +  ++  T+IA+ + 
Sbjct: 300 DFGTGYSSLSYLKRLPLSQLKIDQSFVRDVLTDPSDAVIARTVVALGHSLGLTVIAEGVE 359

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  L  M CD  Q  +   P   ++++
Sbjct: 360 TAEQRDALAAMQCDAFQGYYFGRPAPADALI 390


>gi|91793474|ref|YP_563125.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91715476|gb|ABE55402.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella denitrificans OS217]
          Length = 720

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/566 (20%), Positives = 248/566 (43%), Gaps = 23/566 (4%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            D      A   +  ++   ++    +    P    + G+    +     + L +     
Sbjct: 170 EDLTLYLSATEQAEHLIILINLKTQMIRYVNPAHQKLTGIPREQVQDQHASKLAFF-RGA 228

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +    ++++ +  R   +Q E +++  D   +W+    R    S G+    + + +DI+
Sbjct: 229 NEQVTPMINALL--RGETIQGERQMQHVDESQYWVHYHARHFVTSRGNDFALVAV-HDIS 285

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            Q +    +   A+  NLTG+ NR  F   L           +    ++++D+  + + N
Sbjct: 286 AQYRHKAELERLAWNCNLTGLHNRLHFTQNLDK---------SANGVLILVDLLGFNRFN 336

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIAMR 638
           D  G   GD +L+ + RR+     + +   +AR+  + FGI+L       ++      + 
Sbjct: 337 DTHGHERGDALLIEVARRVKHFANYHNAIDVARIGSDEFGILLPEIGELAELERCVAKLY 396

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  P+ +   ++    +I   +   S +     L  A++A+ +AK +   H + F   
Sbjct: 397 EKLLAPVIIARDKVEPKPAIAVVNI-ESVVDLFAPLTCADIALQYAKRKALKHYQIFNTQ 455

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I+ DL  A+++ E  L Y P++ L  +  +G EALI+W HPK G +    
Sbjct: 456 LLEAFKANIEIERDLQQALKSREFELYYQPLMDLQTQRYIGAEALIRWHHPKKGILYPGA 515

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I A+  ++LE   + +  W+ +     + + +N++++    ++L   +  
Sbjct: 516 FIEIAEQTGLINAMGQWVLETACKQLNLWQHK--NIDLTMHVNVSARQFFSSQLYAQVWT 573

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+++    P R+ L  +E+ +M + E +  L   L ++G+ L +DDFGT  S + YL   
Sbjct: 574 LVTRYRIKPKRLILEITETELMSDIEHATKLCKELAELGVGLAIDDFGTGHSSMRYLKQF 633

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +   +   +   I+ +II MA  +  ++ A+ +  +     LT+  C +
Sbjct: 634 PISKLKIDRSFVMDISSSRESREIVSAIIAMASALNISLTAEGVETKEQEAFLTQSACHH 693

Query: 935 IQDSHVASPLGFNSILKLLKERFPLV 960
            Q    +  +  +    LL  +  L+
Sbjct: 694 AQGFLYSPAVRESDFSHLLTLQQSLI 719


>gi|145224956|ref|YP_001135634.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium gilvum PYR-GCK]
 gi|145217442|gb|ABP46846.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium gilvum PYR-GCK]
          Length = 612

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 218/454 (48%), Gaps = 8/454 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  + ++   +   A  D+LTG+ NR++ L  L   L           + +  
Sbjct: 158 IASLFAQVQARVEAETQLRYLAEHDDLTGLNNRRALLSHLDGRLAEGQPGP---VSALFF 214

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +  L  R+ E      ++ARL G+ F ++     +     
Sbjct: 215 DLDRLKAINDYLGHTAGDWFIRVLAERLREGADPRALIARLGGDEFVVVPAGPMDGEAAE 274

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  ++ ++   +++    +T T SIG A     + T+S++L+ A+ A+  AK+ GGN 
Sbjct: 275 SLAHQLQSTLKERVSIDGEMLTRTVSIGVAVGIPGQDTTSDLLRRADQAVLTAKNSGGNR 334

Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F       +     I+  L   +EN  L L Y P I +   +I+ +EAL++W HP  
Sbjct: 335 VTVFTEEMSLKQEFNNDIELHLQSVIENGALLLHYLPEIDMRTGDILAMEALVRWQHPTR 394

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S   F+ +AE + +   +  +++     D   WR         + IN++   L+ + 
Sbjct: 395 GLLSPESFIGVAESINLAGELGRWVMRSACTDFARWRALGIGKDAIMRINVSPVQLVTDG 454

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +  ++ +       + L  +ESVV+ + E +R+ L  L+K G+ + +DDFGT  S 
Sbjct: 455 FVESVAGIVDEFGLEHGSVCLEITESVVVQDIETTRVTLNGLKKAGVLVAIDDFGTGYSA 514

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P DT+K + S +   GS    +AI+R+II +A+     ++A+ +  ++    L
Sbjct: 515 LSHLKSLPVDTLKIDKSFVRELGSDPGDLAIVRAIIALAEAFGLELVAEGVETDVGALTL 574

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960
            R GC   Q   ++ P+  +++  LL + R P+ 
Sbjct: 575 LRHGCHRAQGFLLSRPIPTDAMETLLAQGRIPVS 608


>gi|120553400|ref|YP_957751.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120323249|gb|ABM17564.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 577

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 113/423 (26%), Positives = 219/423 (51%), Gaps = 6/423 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG  NR  F DRL   +  +   ++ R  ++ ++ID ++ IN+  G    D +++ L  R
Sbjct: 150 TGFINRDLFFDRLQKAVLRAERANH-RLALLHLNIDDFRNINESFGYQKSDQLMLRLAER 208

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L+  D L R+ G+   II+    +SL I      +  ++  P+ +  + + V+AS+
Sbjct: 209 LRQTLRRVDSLMRIGGDELAIIVEKVEDSLDITQIIRKVVSALDEPVMVDGQNVVVSASL 268

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVE 716
           G A++  +  +  E+L+ A  AM+ AK   G     +          ++ ++ DL  A+ 
Sbjct: 269 GVATYPEAGDSPEELLRRANRAMFEAKRDPGTSYRFYDRQLHISAGYQLRLEADLRNALR 328

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L Y P I L  EE+ G+E L++W+HP+ G +   EF+ +AE   +I  I  +++E
Sbjct: 329 GKELELYYQPRIDLATEEVRGVECLLRWNHPERGLVGPDEFIPVAERSGLIVPIGYWVIE 388

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +  + +     +   P +   +N++ +   D ++ E +  +I       S ++L  +ES 
Sbjct: 389 QACKRLQE-STELGFPGLVFAVNLSFRQFHDRKMTETIFRIIFNANVDTSLLELELTESA 447

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEK 894
           +M +PE ++  L  L ++GIS  LDDFGT  S LS L ++P   VK + S +   G +  
Sbjct: 448 MMHDPEYAQRCLRELNQLGISFALDDFGTGFSSLSNLQHLPISLVKIDKSFVQELGQSAD 507

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+R+II +A +++ +++A+ +  +  ++ L +  CD IQ  + A P+ +N +++ + 
Sbjct: 508 AEHIIRAIISLAHSLQISVVAEGVETDGQLEFLRQQHCDEIQGYYYARPMPWNDLVQFMN 567

Query: 955 ERF 957
            + 
Sbjct: 568 RQN 570


>gi|84624132|ref|YP_451504.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576801|ref|YP_001913730.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188576993|ref|YP_001913922.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|84368072|dbj|BAE69230.1| GGDEF family protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521253|gb|ACD59198.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521445|gb|ACD59390.1| Putative signal protein with GGDEF and EAL domains [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 696

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 211/434 (48%), Gaps = 7/434 (1%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G  +GD +L
Sbjct: 263 ALHDPLTRLPNRVLLHEHLLQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHQLGDRLL 321

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+
Sbjct: 322 VVVAERLNAHRRAHGSLARLGADEFV-LVADIADPGDAAALAAHLVQALAVPFMVSNHEL 380

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
            +++S+G A +     +  ++L +A+ AM HAKH G N    F  S      +R+ +  +
Sbjct: 381 RLSSSLGIAQYPEDATSGPQLLTHADAAMNHAKHAGRNRYSFFERSMTATTRERLQLLHE 440

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  +
Sbjct: 441 LPRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLL 500

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L +  R +  WR   +     + +N+++  L    L + +   +S+ + +P ++ L
Sbjct: 501 GSWVLRQACRQMHDWRAAGHG-DWRVAVNLSAIQLASPSLLDEVATTLSEFMLAPGQLTL 559

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT- 889
             +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +  
Sbjct: 560 EITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQA 619

Query: 890 -GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S+ + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+    
Sbjct: 620 MDSSAEDIAIVAAVVALAHTMRLQVVAEGVETIAQRNTLERLGCDQLQGYLLGRPMDAER 679

Query: 949 ILKLLKERFPLVKN 962
            +  +  +    + 
Sbjct: 680 FIATVVAQRNGPRR 693


>gi|325124519|gb|ADY84042.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 684

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 211/436 (48%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+ +  R+   L     L R+ G+ F +++    N+ +    A  + + 
Sbjct: 305 DAFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTNADEAVILAEKVLQL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQESYQISGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + E+ G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFILYYQPKFN-TNLEVCGVEALIRWNHPALGILTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+    I  W      P   + +N+++    + +L   ++AL
Sbjct: 483 IEGAEKTGLIIPMGYWALEQACLQIQEWERSN-TPFYPVAVNLSALQFENKKLFSTLEAL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIVEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+  + +++
Sbjct: 662 QGYLLGMPVHVDQLIE 677


>gi|119468143|ref|ZP_01611269.1| sensory box/GGDEF domain/EAL domain protein [Alteromonadales
           bacterium TW-7]
 gi|119448136|gb|EAW29400.1| sensory box/GGDEF domain/EAL domain protein [Alteromonadales
           bacterium TW-7]
          Length = 735

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 138/593 (23%), Positives = 252/593 (42%), Gaps = 30/593 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++ I    ++  +      Q + S  +    A+  + D V   +     +   P    I 
Sbjct: 156 LLEIESLAMELDVREKELKQ-LSSKHQLFFHALTSTADGVVITNSTGKIIAVNPSFCRIT 214

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRT---ILDSFVGY--RRGRLQYEFRVRAADNQFH 493
           G                +HI+D           +    +    G    E   R    + +
Sbjct: 215 GYDEADSLN--------MHIHDIKQNNQPNINFEQVWQHASEAGYWSGELVTRRKSGELY 266

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             ++ +  + N +     YIG+ +DI+  K + E I    + D LT +PNR SFL +L  
Sbjct: 267 PELLTLSLVKNEHDTNDHYIGVFSDISSLKVTQERIDYLTWHDELTALPNRNSFLKQLEQ 326

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L   +TD N    + +ID+D +   ND +G+  GD VL  LT+RI       DI+ARL 
Sbjct: 327 QLQSCSTDKNFAY-IFIIDVDGFHSFNDGMGLLAGDHVLKELTKRIHTNTDNNDIIARLG 385

Query: 614 GNRFGIILISENNSLKIADF------AIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            + F  + + +    +          A  +  S+ +P  +  +E+++T SIG   +    
Sbjct: 386 SDAFATLSVLDKGIGRARAQIIAEKKAQEILTSVRLPFFVDLKEVSLTVSIGMYIFPQHG 445

Query: 668 --ITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLV 723
              ++ E ++N E A Y AK +GGN V  F  S       R  I++DL  A+  +EL L 
Sbjct: 446 QWESAIETIRNCEAACYKAKEKGGNRVTFFDTSFGEQAKRRFEIEQDLRKAITYNELSLH 505

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
                   ++ + G E L++W H   G IS SEF+ IAEE  +I  ++ ++ E   + + 
Sbjct: 506 LQSQYD-SNQILKGAEVLLRWQHTTKGFISPSEFISIAEESDVIYDLDCWVCENALKTLA 564

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                   P + + INI+ +   +      +   ++      S++ +   E  ++ N + 
Sbjct: 565 KINQT--HPHLSLSINISGRHFHEPRFLAFLVEQLTINNVIASQLTIEIIEGTLLNNMDS 622

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRS 901
           +   +  L+K+G+ +++DDFGT  S L+YL  +P   +K + S +    + +    I+  
Sbjct: 623 AIEAVHNLKKLGVKVSIDDFGTGYSSLTYLKQLPIQELKIDRSFVLEAPTNKNDKLIIDM 682

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I+ + +  E  ++A+ +  +     L       +Q  H+  P   N  L  LK
Sbjct: 683 IVSLGRLFELDVVAEGVENQSHFDLLQEYPEVILQGYHLHKPEPVNDWLAKLK 735


>gi|187922202|ref|YP_001893844.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187713396|gb|ACD14620.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 713

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 126/448 (28%), Positives = 219/448 (48%), Gaps = 13/448 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              +    D   + +SLE +   A  D LTG+PNR SF +RL   + L+  +   R  ++
Sbjct: 229 TGLVSYLIDSDVRAESLEHLRRMALSDLLTGLPNRGSFNERLDLEIVLA-REAGTRLALI 287

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI---SENN 626
            ID++++K++ND+ G   GD+VL  L RR+  LL+  + +AR+ G+ F  I         
Sbjct: 288 GIDLNRFKEVNDLRGHHAGDEVLRILARRMTGLLRENEFVARIGGDEFAAICRMTGEVTA 347

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              + DF   +  ++  P+ L E E+    S G A +     +   ++ NA+LAMY AK 
Sbjct: 348 EAGLEDFLGRLEAALYKPVRLDEYEVVTGGSFGVAIYPDDATSKPVLINNADLAMYRAKT 407

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                V  +  +     R    +  DL  A+  ++L + Y     L+  E  G EAL++W
Sbjct: 408 SMTRSVCFYEPAMDEMVRARRNLASDLRGALAATQLSIHYQVQTSLVTGETRGYEALLRW 467

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G I  + F+ +AEE  +I  I  ++L +     ISW      PP  + +N+++  
Sbjct: 468 RHPVQGPIPPATFIPLAEENGLILEIGEWVLRQACAMAISW-----DPPYPVAVNVSAVQ 522

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L + +  ++ +T     R++L  +ES +  +  RS   L +L+++G+S+ LDDFG
Sbjct: 523 FAHANLTQLVAGVLGETGLPAQRLQLELTESTIFADRGRSLRTLRQLKELGVSIALDDFG 582

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L  L   PFD +K + S  +   ++ +  AI+R+++ + K++   ++A+ I  + 
Sbjct: 583 TGYSSLDTLRSFPFDRIKLDQSFFSEAEASPQDRAIIRAVLALGKSLGIPVLAEGIETQS 642

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +  LT  GCD  Q      P     I+
Sbjct: 643 QLALLTEEGCDEAQGFLFGRPAALAEIV 670


>gi|239928776|ref|ZP_04685729.1| phosphodiesterase [Streptomyces ghanaensis ATCC 14672]
          Length = 709

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 219/426 (51%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ   +R+ T LD +   D  R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 264 LRDPLTGLPNRQWLQERIWTALDEAERMD-ARAALMLIDLDRFRSVNDTLGHLAGDRLLL 322

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A ++  +++ P++L    + 
Sbjct: 323 QIADRLRLALPRGAEAARLGGDEFAVLLPVADSTTSATRIARSLVGALSSPLDLDGLTLV 382

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ +++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 383 LEASAGVAVFPDHAVDAEGLLRRSDVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 442

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 443 RALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 501

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 502 YVLETALGQVAEWRAQGLFVP--VAVNVSPRDVHIPGFAGSVAARLARHGVPAGALQLEI 559

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 560 TEHVLLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 619

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +  +   
Sbjct: 620 VDTEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPDETT 679

Query: 951 KLLKER 956
             L  R
Sbjct: 680 AWLLAR 685


>gi|319778117|ref|YP_004134547.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171836|gb|ADV15373.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 737

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 205/435 (47%), Gaps = 12/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   I   A  D LTG+ +R  F  RL   L L       +  ++ +D+D++K++ND  
Sbjct: 301 ETENHIYHLAHYDLLTGLHSRGHFNSRLADALTLLPATGE-QLAILYLDLDRFKQVNDSF 359

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L     R+  L    D +ARL G+ F II  +     ++      + +S   
Sbjct: 360 GHPAGDELLREFADRLRRLTLEVDTVARLGGDEFIIIQRAVAGENEVKTLCEHLIESARR 419

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +   ++ V  S+G A      +   E+++ A+LA+YHAK  G +    F     ++ 
Sbjct: 420 PFEVAGVQVFVGVSVGVALAPRDGVDQVELVRKADLALYHAKAGGRSGYALFEPEMDQTL 479

Query: 704 RVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                +++DL  A++    + + Y P+       + G+EAL +W H + G ++   F+ +
Sbjct: 480 AKRKGLEQDLRKALQTPGHIRVHYQPLYTADTNRMTGVEALARWSHAERGWVAPDLFVPL 539

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ +   +L +   D + W  +       + +N++   L +      + +++ +
Sbjct: 540 AEETGLIEVLGELVLRQACLDAVHWPIE------TLAVNVSGLQLNNPSFAMKVTSILLE 593

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R++L  +ES +   P   +  +  LR +G+   LDDFGT  S L  L  +  D 
Sbjct: 594 TQMDPRRLELEVTESTLSERPTECQQNMAALRSVGVRFALDDFGTGFSSLGRLQSLEVDR 653

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   G +    AI+++II +A+    +  A+ +  E     L ++GCD +Q  
Sbjct: 654 IKIDRSFVQGFGGSNGDEAIVQAIIDLARATGLSTTAEGVETESQCNYLRKLGCDQLQGF 713

Query: 939 HVASPLGFNSILKLL 953
            ++ P+    + +LL
Sbjct: 714 LLSRPVPKEDLQELL 728


>gi|239813725|ref|YP_002942635.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
 gi|239800302|gb|ACS17369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Variovorax paradoxus S110]
          Length = 989

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 135/580 (23%), Positives = 253/580 (43%), Gaps = 17/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLAS 442
             V + V         I     +    +    D++ D  I        +P          
Sbjct: 411 VCVYRDVTEKKRHVADILEGKAQLQATLDALPDVLMDAGIDGRCYSFHSPRRPRPA-FKV 469

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G + +    +  N        L           +  F +R A     W  I +   
Sbjct: 470 REPVGKLMS--DLLPANAAAEVMVALRDAFETGFSTGRQ-FEIRTARG-VTWFEISVSRK 525

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G   R+I I  DITE K +   I   AF D LTG+PNR+  L RL   +D +    
Sbjct: 526 VIGEGAAARFIVILRDITESKLAAREIEHLAFYDILTGLPNRRLLLHRLQATIDANVRRS 585

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ +D+D +K +ND LG A GD++L  +  R+ + LK    +ARL G+ F ++L 
Sbjct: 586 R-HGALLFLDLDAFKTLNDALGNATGDELLKQVAVRLQDSLKEGGTVARLGGDEFVVLLD 644

Query: 623 SENNSLKIADFA-----IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           + +    +A         A+  ++     L + +   T SIG   +++++ +  ++LK A
Sbjct: 645 NLSEDAGVAAMQANAAGEAILAALNGTFQLADHQYHSTGSIGAVVFSATQQSLEDLLKQA 704

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           ++AMY+AK  GGN +  F  S   +      ++ +L  A+   +  L Y   +   +  +
Sbjct: 705 DIAMYYAKSAGGNALRFFEASMQTAITARATLESELHAALAGEQFVLHYQSQVA-SNGHV 763

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           V  E LI+W HP  G +    F+ +AEE  +I  I +++LE     +  W   A    + 
Sbjct: 764 VAAEVLIRWQHPVRGMVQPGGFIELAEETGLIVPIGMWVLETACVQLERWSHDARRRHLR 823

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++++    ++  + ++ ++ +T   P+R++L  +ES++      +   +  L  +G
Sbjct: 824 LAVNVSARQFRTDDFVDRVRDVLRRTGADPTRLELELTESLLQDKVSETICKMQALAALG 883

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           +  ++DDFGT  S LSY+  +P + +K +   +   G   K   I+++II MA+N++  I
Sbjct: 884 VRFSMDDFGTGFSSLSYMTQLPLNQIKVDKFFVQSIGLDPKVELIIQAIIGMARNLDLEI 943

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A+ +  +   + L   G    Q    + P+  +     L
Sbjct: 944 VAEGVETQQQFEFLQAHGAMLCQGYLFSRPVPLDQFDAQL 983



 Score = 43.0 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 55/203 (27%), Gaps = 27/203 (13%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
                L+ +  I L  A+     +  +  A      L+++ + +  +  +         +
Sbjct: 261 TLHRGLLIVASIPLESALEDWRRDRNVVAAAALAFALMILAVTYFALAQLRRQWRARAEL 320

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                    A+    D     D     VT               +   +           
Sbjct: 321 LRSKATLDQALESMVDGFVLLDPNDRVVTWNRRFVDFFPWTQPLLAPLVP---------- 370

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F+ I++    +   +   E  +   + Q    +    P    +G     + +  D+T
Sbjct: 371 ---FQQIVEQNARHLLTQNDQEITLL--NGQVIVAVNSPTP----DG---GLVCVYRDVT 418

Query: 521 EQKKSLE-----GILCNAFQDNL 538
           E+K+ +           A  D L
Sbjct: 419 EKKRHVADILEGKAQLQATLDAL 441


>gi|119476666|ref|ZP_01616976.1| Predicted signal transduction protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449922|gb|EAW31158.1| Predicted signal transduction protein [marine gamma proteobacterium
           HTCC2143]
          Length = 669

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 122/457 (26%), Positives = 230/457 (50%), Gaps = 9/457 (1%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  GD+   +    D  E  ++   +   A  D LT +PNR   ++RL   ++ +  +  
Sbjct: 215 DEIGDLTLGVNTMLDTIEAHET--QLFQRANYDELTQLPNRHLLMERLAHGINTATRN-K 271

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D++K IND LG  VGD++LV +  ++   L+  D ++R  G+ F ++L +
Sbjct: 272 TEIALLFLDLDRFKVINDSLGHRVGDELLVQVAGKLVRTLRKSDSISRWGGDEFVMLLEN 331

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N   I +    + + +A P       + V+ SIG A +      S  +LK+A+++MY 
Sbjct: 332 IKNVKDINNIVEKIVEELAKPTMTGGHLLHVSTSIGIARFPQDGDDSLSLLKHADISMYR 391

Query: 684 AKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G    E F  +       R+ ++     A E  + ++VY P + +    ++G EAL
Sbjct: 392 AKAKGPGKFEYFNPAMLNDSVKRLTLEVTAHEAFEKKDFFMVYQPQVAVTSGSVIGFEAL 451

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W+      +S  EF+ + EE+ ++  ++L++LE+  +  + W++    PP+ I +N+ 
Sbjct: 452 IRWNF-NGSFVSPDEFLPVIEEIGLMHDLSLWVLEQACQQNVDWQNAGL-PPVSIAVNLP 509

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              +L  +  + +Q+++ KT  +   +++  +E+  +G    +  +L  LR IG+ + LD
Sbjct: 510 PSFILHIDCAQLIQSILRKTGLAAKYLEIELTENTFIGPALGAISVLQSLRDIGVVIALD 569

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P  T+K +GS +   G ++    I+ SII + K +  T++A+ + 
Sbjct: 570 DFGTGYSCLSYLKDLPIGTLKIDGSFIQELGVSQASEGIVHSIITLGKGLGMTLVAECVE 629

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E     L  M CD IQ    + PL        L  +
Sbjct: 630 TEQQRSLLENMECDIIQGYLYSKPLPAADAASFLMAQ 666


>gi|226952890|ref|ZP_03823354.1| diguanylate cyclase/phosphodiesterase [Acinetobacter sp. ATCC
           27244]
 gi|226836401|gb|EEH68784.1| diguanylate cyclase/phosphodiesterase [Acinetobacter sp. ATCC
           27244]
          Length = 660

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 210/437 (48%), Gaps = 9/437 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   +  D+LT +PNR  FL     ++       N +     ID+D++K +ND  G 
Sbjct: 227 NKELATQSLHDSLTKLPNR-LFLTDYAEVIFPLHHLHNQKVAFFYIDLDRFKSVNDAFGH 285

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD +L+ +  R+   L     L R+ G+ F +I  +  ++     FA  +   I    
Sbjct: 286 HIGDQLLIQMAHRLKSKLNANQRLFRIGGDEFVLISENTESAE-AMRFADEILHHIQETY 344

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +  ++I ++AS+G A +        ++L NA++AM  +K +G N    F   S + D  
Sbjct: 345 LIAGKDINISASLGIAIYPEHGRNIQDLLINADIAMLTSKDQGRNTYTMFHAMSDQQDVR 404

Query: 706 M---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +  DL  AV+  +  L Y P     + E+ G+EALI+W HP  G ++   F+  AE
Sbjct: 405 SQSKLINDLYKAVDEQQFVLFYQPKF-TANYEVCGVEALIRWKHPSLGLLTPQMFIDGAE 463

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  + LE+  + I  W +Q+N P   I +N+++    + +L   ++ LI++  
Sbjct: 464 KTGLIIPMGYWALEQACQQIQKW-EQSNSPFYPIAVNLSALQFENKKLFSVLEQLIAQYQ 522

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +ES  M + + S   L RLR++GI + +DDFGT  S   YL  +P D +K
Sbjct: 523 IKPHNLILEITESTAMHHIDASVRTLERLRQLGIRIAIDDFGTGYSSFLYLKDLPVDELK 582

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +          AIL SII +A  +  T+ A+ +  +     LT++GC  +Q   +
Sbjct: 583 IDRGFIIDLQPNSKEEAILESIIHLATKLGLTVTAEGVETQQQADILTKLGCHQLQGYLL 642

Query: 941 ASPLGFNSILKLLKERF 957
             P+    ++   ++ F
Sbjct: 643 GIPVNVEGLVLHRQQHF 659


>gi|149907708|ref|ZP_01896455.1| PAS:GGDEF [Moritella sp. PE36]
 gi|149809378|gb|EDM69307.1| PAS:GGDEF [Moritella sp. PE36]
          Length = 705

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 131/615 (21%), Positives = 255/615 (41%), Gaps = 23/615 (3%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            I        I      +I +  L       V L+G  +   V +     Q +       
Sbjct: 86  VIAKAMTLETIYGHQQFEITKIPLKNRAGKTVGLLGIAI--DVSSKFNSEQKLQEKTALL 143

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +       D V   D+    V        +       + G        I           
Sbjct: 144 NSIFDALPDFVIYKDMEGRIVECNRAALKLAKKKKADVIGKTIAE---ILPASTAKVAID 200

Query: 468 LDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            D+ +    +    + EF +     +  ++ +   P+   N +++  + I+ DI E++ +
Sbjct: 201 YDTQLKSNYKSANYKMEFELA---GRQVYVDVHKHPVI-QNNELVGTVSISRDIKERRTT 256

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
           LE I      D LT + NR +FL  L  I      D +    +++IDI K  ++N   G 
Sbjct: 257 LEKIATLTKHDQLTKLLNRPTFLQSLEDI------DQDSHWGILLIDIKKLGQLNSNYGT 310

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD VL+ +  +I +++     LAR+ G+RF I+    ++  ++      +   +   I
Sbjct: 311 EIGDQVLIHVGEQIKKIVPEDAFLARIQGDRFAILTNKASSPDQLNYLCNKLIDKLNRQI 370

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
            +    I +   IG A++ ++   ++++L  +E A+  ++     +   F     +    
Sbjct: 371 AIQGHVIDLAVCIGAANYPNTVQDTNQLLTCSEQALSRSRKHTEQYYTLFDPVLEAHAEA 430

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +  DL  A+ N  + L Y P++    + ++G+EAL +W HP+ G I   +F+ +AE+
Sbjct: 431 EKRLIVDLKHAINNKAIDLYYQPVVDANSKAVLGVEALARWHHPEQGLIMPIKFIELAEK 490

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   +LE+  + +  WR Q     IF+ +N++     D +L   ++  I     
Sbjct: 491 NNLIGQLGEVVLEKACQQLALWRAQGID--IFMAVNLSPIQFNDPQLISKIKYYIDYYDI 548

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R+++  +ES ++ +   +  +L  L  +G+ L +DDFGT    LSYL  +P   +K 
Sbjct: 549 PAHRLEIEVTESALLESNHTTGHMLEELINLGVRLAIDDFGTGYCSLSYLKNMPAHKLKI 608

Query: 884 NGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      +   AI RS+I +A+ +  T+ A+ +  E  +K L    CD  Q    +
Sbjct: 609 DKSFVDELELDKTTTAITRSVISLARELNITVTAEGVEEESQMKWLQAQQCDQFQGYLFS 668

Query: 942 SPLGFNSILKLLKER 956
            PL  +      K+ 
Sbjct: 669 RPLPSDKFCLWYKQH 683


>gi|330961138|gb|EGH61398.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 685

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 115/582 (19%), Positives = 235/582 (40%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +    + +   D         P I
Sbjct: 95  VLKPKVQTLLEQQRNRRALQQLSHELESARTFNASVLANVAEGILVVDESGLISFANPAI 154

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             +L  +   + G        I     D   +              ++  +R        
Sbjct: 155 CQLLNASVDQLRGTHVLDY-VIEPYVGDWLESGFYKHYRNADTYRVHDAVLRTVQGSQLP 213

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    +          +    D++  +   + +   A  D LTG+ NR+     +  +
Sbjct: 214 VALSCAALPPEQ---KAMVLTVLDMSVVRDLYQQLEKQAVTDALTGLLNRRGLYQAVEGM 270

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D     V+ +D+D +K+IND LG   GD VL+ +  +  E ++  D+LAR+ G
Sbjct: 271 LLRNEKADKY-LVVLFMDLDGFKQINDSLGHDAGDQVLLWVAEQFKECMRPYDVLARVGG 329

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++   +   + A  A  + + ++    +   +I + AS+G A++         +L
Sbjct: 330 DEFTVVIDGLDYPEQAAKIAEKLIERVSSKRQVDGVDIALGASVGIATYPDCGSNLDGLL 389

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A++AMY AK  G      +  +       R+M++E +  A++  +  +VY P I + D
Sbjct: 390 RAADIAMYEAKRAGRKQYRFYDQNMNGRARSRLMLEESVRTAIDGKDFSVVYQPQIHVAD 449

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G +  + F+ + EE  +I  +  ++ ++ A    +W       
Sbjct: 450 GRLRGFEALLRWQHPAVGEVPPALFIPLLEETRLINRLGSWIFDQGAEQRQAWSRVFASD 509

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            +  +  ++        L   ++  + +    P ++++  +ES ++ N   S   L  L 
Sbjct: 510 VVVSVC-VSPTQFCMPNLASELKRAMDRFELEPGQLEVEITESSLVNNLSHSHKQLALLH 568

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
            +G+ + LDDFGT    LS+L  +  DT+K +   +      R   A+  SII + +N++
Sbjct: 569 DVGVRIALDDFGTGDCSLSHLRNLHLDTLKLDRRFVANIVGSRRESALASSIIDLCRNLD 628

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +      + L   GC  +Q   +A P+     L  
Sbjct: 629 MLVIAEGVETREQYQWLADNGCQVMQGFLIAHPMVAEDALGF 670


>gi|153833222|ref|ZP_01985889.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi HY01]
 gi|148870493|gb|EDL69408.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi HY01]
          Length = 763

 Score =  429 bits (1104), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 218/435 (50%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + +L  A  D+LT +PNR+     +T  L+      +    +M IDID +K +ND  
Sbjct: 327 ATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNE----TSDPFALMFIDIDNFKSVNDTH 382

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL  +  R+        ++ R + + F I+L+++ +   +   A  +   ++ 
Sbjct: 383 GHEFGDEVLKQIALRLKSFDSEDRLIVREASDEF-ILLVNQTDDSVVRTLASDLIHYLSE 441

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRS 702
           P  + E +  +++S+G A + S   +   +L++A++AMY AK  R    +   ++ +   
Sbjct: 442 PYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMYQAKKDRNAYSIFDQQMQAKHL 501

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ I++ L LA+E   L+LVY P +   D +I G+EAL++W   + G +  +EF+ +AE
Sbjct: 502 HKMKIEQRLRLAIERQSLFLVYQPQLN-RDGQIYGVEALVRWQDEELGFVPPNEFIPVAE 560

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++  +   ++E+   D+     +     I + INI+ K  +     E + A+I +  
Sbjct: 561 SSGLMVRLGELIIEKSFVDMARLTGRV-KQSIQMSINISVKQFIQVNFIEDLVAMIDRHK 619

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SRI L  +E++ + + E+   +  RL  +G  L+LDDFGT  S LS L  +P D VK
Sbjct: 620 VKHSRITLEITENLFIEDLEKFAPICQRLHSLGFKLSLDDFGTGYSSLSMLKALPIDEVK 679

Query: 883 FNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +        A  ++++II + KN    ++A+ +       +LT  GCD IQ    
Sbjct: 680 IDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETRHQRDQLTACGCDLIQGYFY 739

Query: 941 ASPLGFNSILKLLKE 955
           + PL F  ++   +E
Sbjct: 740 SKPLPFEQLISFAEE 754


>gi|171060215|ref|YP_001792564.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170777660|gb|ACB35799.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 603

 Score =  429 bits (1104), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/593 (21%), Positives = 257/593 (43%), Gaps = 40/593 (6%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + +     R       +   +    +  +     P  A +L     S  G + N
Sbjct: 10  QAHDAHEALMQFLYR-------APIGLAQTTLAGEIEMINPMSARLL--MPLSRDGGLDN 60

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +  +        L +      G +    R+            ++  +S    D  R
Sbjct: 61  LFEVL--DGFAPQLRGLVAAFEPSSGVVCESVRMAIEAGTGGLAEAQVLSVSLMKLDSAR 118

Query: 512 YIGIANDIT-----EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            + + +D+T     EQ+     +   A  D+LT +PNR +  D++   L L+ATDD    
Sbjct: 119 LMAVLSDVTHEVQREQQHLARRLSDAARIDSLTQMPNRAAVCDQIQRALLLAATDDEPGF 178

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL----------ARLSGNR 616
            V+ ++ D++K+IND LG AVGD+VL  +  R+   L+  D +          AR+ G+ 
Sbjct: 179 AVLFMNCDRFKQINDTLGHAVGDEVLGLMADRLRGTLRRHDRVGQIDPDQPMAARIGGDE 238

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++L        +   A  +   ++ P  +   ++  + S+G      ++  +  +L++
Sbjct: 239 FVVMLDDLRRPDDVHAVARRLLDVLSKPYGIGRHQLHCSVSMGIVLGAQARGDADAVLQD 298

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII-----R 729
           A +AM  AK  G      F  +          I+ +L  A+   EL++VY P++      
Sbjct: 299 ASIAMVEAKRAGAARYVVFEPAMRERAAQRGDIESELRRALAEGELFVVYQPVVGLQGAD 358

Query: 730 LMDEEI---VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           L+D  I    G+EAL++W HP+ G +   EF+ +AE+  +I A+  F+L       + W+
Sbjct: 359 LVDGRIDASAGVEALVRWRHPRRGLVPPLEFIGVAEDCGLIGALGDFVLATACHQFVQWQ 418

Query: 787 D-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q    P  + +N++   L      + ++ ++  +  +P +++L  +ES+   + +  R
Sbjct: 419 QVQGERAPRKLAVNLSRAQLGQPGWVDAVRQILQTSGMAPGQLQLEVTESLAAQD-DGVR 477

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSII 903
             L  L+ +G++L LDDFGT  S L+ L  +P DTVK + S ++   ++     ++ + +
Sbjct: 478 SRLHELKALGLTLALDDFGTGYSSLASLHLLPVDTVKIDRSFVSQVDTSHHHRVLIEATV 537

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +A ++    +A+ I        + ++GC+  Q    + PL    ++  L  +
Sbjct: 538 RVANSLGMNTVAEGIETRAQADLVRQLGCEKGQGYFFSKPLAAADVVGWLARQ 590


>gi|167906045|ref|ZP_02493250.1| EAL/GGDEF domain protein [Burkholderia pseudomallei NCTC 13177]
          Length = 688

 Score =  429 bits (1104), Expect = e-117,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR +  +        +A     +  ++ +D+D +K IND L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRHTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P  +  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPHTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|237731365|ref|ZP_04561846.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
 gi|226906904|gb|EEH92822.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
          Length = 642

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 114/424 (26%), Positives = 202/424 (47%), Gaps = 12/424 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  + + D+LT + NRQ F   L   ++ S  + +   TVM+ D+D++K++ND  G 
Sbjct: 218 NAKLEYDVYHDSLTEMNNRQLFWSDLNKTIERSEKNHD-SVTVMLFDLDRFKEVNDTYGH 276

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  ++ R+  +    D L RL G+ F  +      S  ++  A  +   I+ P 
Sbjct: 277 DAGDMLLRQISDRLVSMSLTSDTLYRLGGDEFAFLSSGLTESHAVSR-AQKICDFISQPY 335

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSD 703
            +    I +T  +G    + ++  S  + K A+LA+Y AK  G   ++ FR        +
Sbjct: 336 TIYNTIINITTCVGIV-ISDTERRSDYLYKFADLALYEAKGEGSGKIKVFRQRMLEKLQE 394

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++ D+ LA+ N E  + Y PI+    +EI   EALI+W HP  G +S   F+ +AE+
Sbjct: 395 SRTLEHDMALAIVNKEFVVYYQPIVDSFSQEIYSYEALIRWLHPLKGLLSPDNFIPVAEK 454

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  +   +LE   R+   W       P  I +N++   L        + +++ +T  
Sbjct: 455 TGMINEMGKAVLEIACREAACWA-----VPAKISVNVSPVQLSSKAFVGIVLSILKETGL 509

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +ES +          L +LR +G+ +++DDFGT  S LS L  + FD +K 
Sbjct: 510 PADRLELEVTESSLFTESTTPMNTLNKLRAMGVKISIDDFGTGYSSLSRLSRLAFDKIKI 569

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +   +  E  + I++ I  MAK++    +A+ +  +  +K L  +GCD+ Q     
Sbjct: 570 DKSFVHSISTQEDALNIIKLITGMAKSLNMKAVAEGVETQEQLKSLQALGCDFAQGYLFG 629

Query: 942 SPLG 945
            P  
Sbjct: 630 KPQP 633


>gi|156977466|ref|YP_001448372.1| sensory transduction protein kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156529060|gb|ABU74145.1| hypothetical protein VIBHAR_06253 [Vibrio harveyi ATCC BAA-1116]
          Length = 763

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 218/435 (50%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + +L  A  D+LT +PNR+     +T  L+      +    +M IDID +K +ND  
Sbjct: 327 ATRQKLLYQAHHDHLTLLPNREYLRAHITRWLNE----TSDPFALMFIDIDNFKSVNDTH 382

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL  +  R+        ++ R + + F I+L+++ +   +   A  +   ++ 
Sbjct: 383 GHEFGDEVLKQIALRLKSFDSEDRLIVREASDEF-ILLVNQTDDSVVRTLASDLIHYLSE 441

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRS 702
           P  + E +  +++S+G A + S   +   +L++A++AMY AK  R    +   ++ +   
Sbjct: 442 PYIVHENQFLLSSSVGVALYPSHGKSLDALLRSADIAMYQAKKDRNAYSIFDQQMQAKHL 501

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ I++ L LA+E   L+LVY P +   D EI G+EAL++W   + G +  +EF+ +AE
Sbjct: 502 HKMKIEQRLRLAIERQSLFLVYQPQLN-RDGEIYGVEALVRWQDEELGFVPPNEFIPVAE 560

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++  +   ++E+   D+     +     I + INI+ K  +     E + A+I +  
Sbjct: 561 SSGLMVRLGELIIEKSFVDMARLTGRV-KQSIQMSINISVKQFIQVNFIEDLVAMIDRHK 619

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SRI L  +E++ + + E+   +  RL  +G  L+LDDFGT  S LS L  +P D VK
Sbjct: 620 VKHSRITLEITENLFIEDLEKFAPICQRLHSLGFKLSLDDFGTGYSSLSMLKALPIDEVK 679

Query: 883 FNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +        A  ++++II + KN    ++A+ +       +LT  GCD IQ    
Sbjct: 680 IDKSFVDNIENDEKALNMVQNIIAIGKNFGMKVLAEGVETRHQRDQLTACGCDLIQGYFY 739

Query: 941 ASPLGFNSILKLLKE 955
           + PL F  ++   +E
Sbjct: 740 SKPLPFEQLISFAEE 754


>gi|54026890|ref|YP_121132.1| hypothetical protein nfa49160 [Nocardia farcinica IFM 10152]
 gi|54018398|dbj|BAD59768.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 622

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/453 (24%), Positives = 219/453 (48%), Gaps = 8/453 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +  + E +   A  D+LTG+ NR++ L+ +   L               +
Sbjct: 159 IAALFAQVQARVVAEERLRYIALHDDLTGLANRRALLEYMEDRL---RPGSPGPVAAFFL 215

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K +ND LG   GD+ + +L+ R+ E L   D++ARL G+ F I+     +++   
Sbjct: 216 DLDRLKALNDFLGHTAGDNFIRTLSSRLRENLDPNDMIARLGGDEFVIVPAKPMDAVAAE 275

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +++ I   + +    ++  AS+G A     + T +++L+ A+ A+  AK  GGN 
Sbjct: 276 LEATRLQQLIGRRVTVGGESVSRGASVGVAVGIPGQTTVADVLRRADHALLSAKSGGGNG 335

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F  +      +   ++ +L  AV +  L L Y P + L    IV LEAL++W HP  
Sbjct: 336 VAVFTDAMRAQFELQDDVELNLRGAVSDGSLLLHYQPEVDLRTGRIVALEALVRWMHPTR 395

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  + F+ +AE   +   +  +++         WR +       + IN++   L+  +
Sbjct: 396 GMLPPAAFVTVAEATNLAGELGRWVIRTACAQFAEWRRRGLAANTVMRINVSPVQLVSLD 455

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E ++ ++       S + L  +E VV+ +  R+++ L  L+++G+ + +DDFGT  S 
Sbjct: 456 FVERIEDILRLFGIDGSSVCLEITEHVVVQDLARTQVTLRGLKRMGVQIAIDDFGTGYSS 515

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P D VK +   +   G++   +AI++SII +A +    ++ + +   +  + L
Sbjct: 516 LSHLKALPVDAVKIDRGFVQRLGASTDDLAIVKSIIGLAGSFGLGVVGEGVETAVAARTL 575

Query: 928 TRMGCDYIQDSHVASPLGFNSILK-LLKERFPL 959
             +GC   Q   +A P+  + +   L+  R PL
Sbjct: 576 VGLGCYRAQGFLIARPMPADEVEAHLVTGRIPL 608


>gi|330989424|gb|EGH87527.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 683

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 212/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQIGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++        + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQAKIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGEQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+ +++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPSNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETLEQEAYIVTQGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|332142772|ref|YP_004428510.1| sensory box-containing diguanylate cyclase, putative [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|332142805|ref|YP_004428543.1| sensory box-containing diguanylate cyclase, putative [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552794|gb|AEA99512.1| sensory box-containing diguanylate cyclase, putative [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552827|gb|AEA99545.1| sensory box-containing diguanylate cyclase, putative [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 706

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/581 (21%), Positives = 245/581 (42%), Gaps = 27/581 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSL------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           QH       +  +  +   Q L      A+      V   D     V        +L  +
Sbjct: 138 QHEYIRHKLNSVLRKNKRMQKLVPPIQQAIHNLETGVVILDDKGGLVLDNKASHRLLLCS 197

Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           S +     +   L  I      +        +  ++   Q E   +  D    W+ + I 
Sbjct: 198 STTPSSIRVGELLKGI------DAPASFLPTLVKKKAPWQGELYWQPVDEYKVWLQVTIH 251

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+   + ++  ++ +  DIT      E +L  +  D+LT + NR  F D +  ++     
Sbjct: 252 PVLQGD-ELTHWVYLFTDITHIHNKEESVLTASGMDSLTKVANRNLFTDTVKRLV----- 305

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            +     + +IDI  +K+IN+ L    GD++L S   R+   +     +AR+  N F ++
Sbjct: 306 QEETAFKLFIIDICGFKRINEALSYQSGDEILKSFALRLQAFVGNSGFIARIGSNEFALV 365

Query: 621 LISEN-NSLKIADFAIAMRKSIAMPIN-LLEREITVTASIGFASWTSSKITSSEMLKNAE 678
              +   +     +   + + +      L   E  +  +IG A++ +   +S  +L+ A+
Sbjct: 366 KREDTFKNESSEQYVKNLIQKLTQTYTVLNGSEPNLGVNIGEANYPAHCSSSEGLLQCAD 425

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+  +K++G N   ++     +       ++  L  A++ ++L L   PI+ L   +IV
Sbjct: 426 IALQASKYQGRNTALTYSEELHKQHFAINELENQLRKAIDENQLKLFLQPIVDLTTGKIV 485

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EAL +W  P+   IS   F+ +AE+  +I     +++      I +   +     I +
Sbjct: 486 KCEALARWITPEGKFISPEVFIPLAEKSELIFPFGEWLINEACNAIDAL--KGANLGIRL 543

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            INI+ + + D  L   ++  +       S + +  +ESV++ + +   +LL  LR +GI
Sbjct: 544 AINISGRQVSDLALLNQIKNALEDHQLPGSNLSIELTESVLVESLDVVSVLLNELRGMGI 603

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           ++++DDFGT  S L YL  +P D +K + S ++         AI+++I+ +A N+   II
Sbjct: 604 TVSIDDFGTGFSSLVYLKKLPIDELKIDRSFVSELEKNTDDQAIVQAILGLAHNLNIKII 663

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ I  +     L    C Y Q      P+     + L ++
Sbjct: 664 AEGIETQQQQDFLQSHQCAYGQGYLYQRPVAIKEFISLAQK 704


>gi|262374213|ref|ZP_06067489.1| diguanylate cyclase domain-containing protein [Acinetobacter junii
           SH205]
 gi|262310771|gb|EEY91859.1| diguanylate cyclase domain-containing protein [Acinetobacter junii
           SH205]
          Length = 686

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 115/432 (26%), Positives = 211/432 (48%), Gaps = 9/432 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   +  D+LT +PNR S  D    ++         +   + ID+D++K +ND  
Sbjct: 252 KINRELANQSSHDSLTKLPNRLSLTDYAE-VIFSHHRLKEQKAAFLYIDLDRFKSVNDAF 310

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  R+ + L     L R+ G+ F  ++    ++ +  + A  +  +I  
Sbjct: 311 GHHIGDQLLIQMANRLHQKLGQNQKLFRIGGDEFV-LISEHTDANEAIELAEKVLHAIQE 369

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             ++  +EI ++AS+G A +        ++L NA++AM  +K +G N    F  +S + D
Sbjct: 370 SYSIANKEINISASLGIAIYPEHGTNVQDLLINADVAMLASKDQGRNTFTIFHSASDQKD 429

Query: 704 RVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +  DL  AV+  +  L Y P   + + EI G+EALI+W HP  G ++   F+  
Sbjct: 430 VRSQSKLINDLYKAVDEQQFILFYQPKFTV-NYEICGVEALIRWKHPTLGLLTPQMFIEG 488

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +  + LE+  + I  W +Q+N P   I +N+++    + +L   ++ L+ +
Sbjct: 489 AEKTGLIIPMGYWALEQACQQIQKW-EQSNSPFYPIAVNLSALQFENKKLFNVLEQLLEQ 547

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  + L  +ES  M + + S   L RLRK+GI + +DDFGT  S   YL  +P D 
Sbjct: 548 YQIQPHNLILEITESTAMHHIDSSIRTLERLRKLGIRIAIDDFGTGYSSFLYLKDLPVDE 607

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AIL SII +A  +   + A+ +  +     LT +GC+ +Q  
Sbjct: 608 LKIDRGFLIDLQPNSKEEAILESIIHLAARLGLIVTAEGVETQQQADILTNLGCNQLQGY 667

Query: 939 HVASPLGFNSIL 950
            +  P+   +++
Sbjct: 668 LLGMPVNVENLV 679


>gi|71736504|ref|YP_276191.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557057|gb|AAZ36268.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 683

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++        + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQAKIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGEQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPGNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWFDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETLEQEAYIVTQGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|89885873|ref|YP_516071.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89347871|gb|ABD72073.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Rhodoferax ferrireducens T118]
          Length = 718

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 124/577 (21%), Positives = 236/577 (40%), Gaps = 18/577 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              Q +    +R    +L SGD  W+ D        +       G    +  G   +W  
Sbjct: 146 QAEQQLNQSRQRLKSLLLMSGDWYWEQDTQFRFTLLSDGFKK-TGKDPAAFLGQT-SWDA 203

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD---NQFHWMIIRIRPMSNSNGDILR 511
               +  +       + +  ++    +EF +  +D       W  +   P  +  G  + 
Sbjct: 204 QCAQD--EALWHKHRATLQSQQPFRDFEF-LVTSDQNTGLPVWFSLSGEPTYDERGQFMG 260

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y G+  DI+ +      +   +  D+LTG+PNR  F   L   ++ S         +++I
Sbjct: 261 YQGVGRDISTRFSDQAQLWKLSNLDSLTGLPNRSRFETTLDRCVE-SGKASGEPFALVMI 319

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DID  K +ND +    GD++L  + RR+   ++  D ++RLSG+ F +IL+       I 
Sbjct: 320 DIDNLKVVNDSMSFLAGDELLKIMARRLSCSVRQTDFISRLSGDEFAVILLDLGTVKDIH 379

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +R ++  P +  E+    T S+G + + +    S++++KNA +A++ AK  GG  
Sbjct: 380 RLIETLRCTLEAPTDNAEQG-RCTLSLGASLFPAHASASADLIKNANIALHRAKSNGGGQ 438

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F             +   +  A+    L L Y P++  +   +V  EAL++W+HPK 
Sbjct: 439 CVLFESEHKHRVDRRATVLRAIEQAISVDRLMLYYQPVVNPVTRAVVSFEALLRWNHPKN 498

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS  EF  + E   +   I  F+ +   +    W  +       I IN+ + D +   
Sbjct: 499 GIISPGEFQEVFENRALTARIGKFVTDMAIKQAALWSRERVDFH-KIAINVTTADFVLGG 557

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCS 868
               +   +      P++I +  +E + +G + E     L  +  +G  +  DDFGT  +
Sbjct: 558 FPIWLADRLMHYGVDPAQICVEVTEGMFLGPSAELVLSGLQIVHDMGAEIAFDDFGTGYA 617

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L +L  +P D +K   + +T         AI+ +I+ + + +   I  + +  +     
Sbjct: 618 SLMHLK-MPIDRLKIERTFVTNIENDKTNAAIIEAIVQLGRRLGKGITVEGVETQAQADI 676

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           L  +GC   Q    + PL  + +   +   +   K T
Sbjct: 677 LLAIGCSQFQGYLYSKPLPAHQVASFIAS-YSGSKTT 712



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +  T     + G     + G   N +     ++   +R + D+ +  +  R  
Sbjct: 46  TDCDGVILFATDRFCELSGFDKDDLTGRRHNIVSSGTSSE-SFYRDMWDTVLSGK--RWT 102

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            E   RA D   +W+   I P ++++G I R++ I ND+T +K++ + 
Sbjct: 103 GEICNRAKDGSLYWVDTTILPFTDTHGKITRFVAICNDVTNKKQAEQQ 150


>gi|330830020|ref|YP_004392972.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805156|gb|AEB50355.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 650

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 212/464 (45%), Gaps = 17/464 (3%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W   + R +        R +    DIT++K         A+ D+LTG+ NR   +  
Sbjct: 180 GMRWFQYQFRYIQ----QGARILLTMRDITDRKLEELEHRHLAWHDSLTGLLNRYGLMKS 235

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L     L       R  ++ +D+D +K +ND  G   GD +L  +  R+ ++      LA
Sbjct: 236 LEAYCGL-----GERFALVFMDLDNFKLVNDNYGHKAGDRLLERVAGRLKQICPRDVELA 290

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKIT 669
           RL G+ F  ++   N   +  + A  M   +  P+ L    E+T+  SIG A +      
Sbjct: 291 RLGGDEFTALVPLGNQGDRAQEVADQMLSQMTKPLQLSGLPEVTIGGSIGIAIYPDDADD 350

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPI 727
              ++  A++AMY AK  G    + F  S  +    ++ +K+ L  A+   EL L Y P 
Sbjct: 351 GDNLITRADMAMYQAKQMGRLRWQRFTPSMQQTLQRKLNLKQFLAKAIGRQELSLCYQPQ 410

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +      ++G EAL++W +P  G++S  EF+ +AEE+ +I+ I  ++L      + SW+ 
Sbjct: 411 VDAAKRRLIGYEALLRWYNPVLGHVSPVEFIPLAEEMGLIREIGSWVLSTALAQVASWQK 470

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           + +   + + +N++   L    L   ++  +       S + L  +E+V+M + +    +
Sbjct: 471 RFHQR-VPVSVNLSGFQLSSA-LPGQVRQQLELHGVDASLLTLELTETVLMLDMKGCLGI 528

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907
           L  L + GI + +DDFGT  S L+YL  +P + +K + S + G     + ++R+   MA 
Sbjct: 529 LDDLSEQGIKIAIDDFGTGYSSLAYLNRLPINNIKLDRSFVVGLN---LPVIRATAAMAT 585

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           N+   I+A+ +    ++  L   GC   Q    + PL    +  
Sbjct: 586 NLGLGIMAEGVEEPHELAALQTQGCHVFQGYLFSKPLTVAQVEA 629


>gi|299771575|ref|YP_003733601.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
 gi|298701663|gb|ADI92228.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
          Length = 684

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 211/436 (48%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   +  DNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSILDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+ +  R+   L     L R+ G+ F +++    N+ +    A  + + 
Sbjct: 305 DAFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTNADEAVVLAEKVLQL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQESYQISGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + E+ G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFILYYQPKFN-TNLEVCGVEALIRWNHPALGILTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+    I +W      P   + +N+++    + +L   ++AL
Sbjct: 483 IEGAEKTGLIIPMGYWALEQACLQIQAWERSN-TPFYPVAVNLSALQFENKKLFSTLEAL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIVEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+  + +++
Sbjct: 662 QGYLLGMPVQVDQLIE 677


>gi|21223867|ref|NP_629646.1| membrane associated phophodiesterase [Streptomyces coelicolor A3(2)]
 gi|4467262|emb|CAB37587.1| putative membrane associated phophodiesterase [Streptomyces
            coelicolor A3(2)]
          Length = 1108

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/875 (18%), Positives = 323/875 (36%), Gaps = 78/875 (8%)

Query: 148  VFRITIN-PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206
            V R+ +  P     F +  + P +  + +                   +IG + L   + 
Sbjct: 191  VLRVPVPNPSYADLFFLCFAPPAIVGLLVLAKRPVTKAGWICLGLDAWLIGGSLLTLAWS 250

Query: 207  TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
                   ++     + A A + + Y  +D   +S ++ L      + R+    A+ +  +
Sbjct: 251  LALAQAAKAEG-GSSVAHAALSVAYPLLDIALVSMVLALHFRRSPVCRSAVNTAIGALAL 309

Query: 267  IFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMV----------------- 306
              +   L  +       + G +  +G    ++L   + +                     
Sbjct: 310  TVVCDALFTSPLLHNSYRSGQLLDAGWFAGSLLLAYAPWAASRRGRATPDETGTGGHTRV 369

Query: 307  -----------TASIARITLASIVLYYTYFIIYHGMKGYERAVL------------LIPA 343
                              +  S         +    +G ER               L P 
Sbjct: 370  VREHVPGQRGSGHQPPPPSAPSAPPPSAPTALPGPGQGGERGRYPAARPIAGSLAALTPY 429

Query: 344  WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                      L+  +  R  + ++   L GG V++ +++   ++  +L     +Q +   
Sbjct: 430  LAAAVCTLGILYNVLNGRSVDRVVL--LTGGTVVLALVVRQGIM--LLDNIVLTQELAQK 485

Query: 404  GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
                   V GS D++            +P  A + G  +  + G        IH  D   
Sbjct: 486  ENHFRSLVQGSSDVIMIAAPNGILRYVSPAAAGVYGRPAEELVGT--ELAGLIHPEDLGC 543

Query: 464  FRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                +  F+          + E R R+      W+ +      +  G I      + D+T
Sbjct: 544  VVHEVRRFLAANPVEEPTTRIECRFRSGGGG-GWLNVESTVNRHHGGLIFN----SRDVT 598

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP----TVMVIDIDKY 576
            E+ +    +  NA  D LT +PNR  F  R+   L      D         V+ ID+D +
Sbjct: 599  ERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVLFIDLDGF 658

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD---- 632
            K +ND +G   GD++LV   RR+ E ++  D  +RL G+ F  +++ +    + A     
Sbjct: 659  KGVNDTIGHQAGDELLVQAARRLHEAVRKGDTASRLGGDEFAALIVGDGARDRAAREGHI 718

Query: 633  --FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
               A  +R +++ P  +   E+ V ASIG A +    + + E+L+NA+LAMY AK  G  
Sbjct: 719  RELADRLRLTLSQPYLIDGNEVRVNASIGVA-FAEPGLGAGELLRNADLAMYRAKAGGKG 777

Query: 691  HVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             VE +R    +       +   L  A+ + E  L++ P++ L D  I  + A  +W   +
Sbjct: 778  RVELYRPQMQQDVVRKAELATRLRAALHDGEFALLHQPVVSLTDGRITSVCAQARWRSSQ 837

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
                + +EF+ + EE      ++ ++L             A    + + I I ++ LLD 
Sbjct: 838  GVLFTPAEFLRVTEEGDRTAELDRWVLREAVEQAAE--RAAAGLSVSVAIRIGARRLLDR 895

Query: 809  EL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +    ++AL+++    P  + +  S+       +     L  LR++G+ + LD FG+  
Sbjct: 896  SMPLGSVEALLTRHGLPPGSLVIELSDIDPRVGLDELDRRLNALRRVGVRIALDGFGSGY 955

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + ++ L  +P D +K +  L+ G  E      I   ++ +A ++    +A  +     I 
Sbjct: 956  AAITALRRLPVDVLKLDRGLVEGVVESARLHKITSGLLRIATDLGLKSVADGVDLPEQIV 1015

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
             L  MGC + Q    +  L    + + L    +P+
Sbjct: 1016 ALRAMGCTHGQGMAFSGALDEYRLRRALAAGHYPV 1050


>gi|118590815|ref|ZP_01548216.1| hypothetical protein SIAM614_06593 [Stappia aggregata IAM 12614]
 gi|118436791|gb|EAV43431.1| hypothetical protein SIAM614_06593 [Stappia aggregata IAM 12614]
          Length = 495

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/440 (28%), Positives = 209/440 (47%), Gaps = 11/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +  +    L  A  D LTG+PNR+  L+    +        +    VM++D+D +K IN
Sbjct: 49  ARSSAHSEALALAQHDPLTGLPNRRRLLEAFADLTYEVK--PDCFRAVMMLDLDGFKPIN 106

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DV G A GD++L S   R+ E L    I+ARL G+ F I+         +A FA  +   
Sbjct: 107 DVYGHAFGDNLLRSFADRLAETLGKDGIVARLGGDEFAIVSPVFKEKSDVAGFARRLITR 166

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I        R+I++ + IG A +       +E+L+ A++A+Y AK  G +    F V   
Sbjct: 167 INDRFEFGNRQISIGSGIGIALYPHDGHAITELLRRADIALYRAKSSGRSTYRFFEVDMD 226

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            S      +++ L  A+ + E+   Y PI+ +    I G EAL +W    +G +   +F+
Sbjct: 227 ASILHRTLLEQRLRRAISDQEVKAYYQPILDMDSGRIAGFEALARWTDTDFGKVPPLQFI 286

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I  +   +LE   +   +W D      +++  N++   L D  L   + A++
Sbjct: 287 PIAEDCGIISELTQHLLEDACKVAANWPD-----DLYLSFNLSPVQLQDPALPLQISAIL 341

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K  +SPSR+ L  +E+ ++ NPE ++ +L  L + GIS+ LDDFG   S LSYL   P 
Sbjct: 342 KKFEFSPSRLVLEITETSLLKNPESAKRILTELTEAGISIALDDFGAGHSSLSYLRDFPI 401

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK + S      E +   AI+ +I+ ++K ++   +A+ I        L   GC Y Q
Sbjct: 402 KKVKIDKSFTERMLEDKQCAAIVEAILVLSKGLDIDAVAEGIEESAVHDALNSNGCHYGQ 461

Query: 937 DSHVASPLGFNSILKLLKER 956
               A+ +       LL  +
Sbjct: 462 GFLYAAAVTSEEASLLLASQ 481


>gi|86144557|ref|ZP_01062889.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85837456|gb|EAQ55568.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 726

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/453 (27%), Positives = 214/453 (47%), Gaps = 19/453 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K+  E +   A+ D LT +PNR  F+  L   +        +   V  ID+D++K++
Sbjct: 260 SSLKQRNEEVEFLAYNDPLTKLPNRSQFIKCLERCIHRCKQSKEV-FAVFFIDLDEFKRV 318

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----------PDILARLSGNRFGIILISENNSLK 629
           ND LG   GD++L  + + +   LK             ++AR+ G+ F + L        
Sbjct: 319 NDNLGHQAGDELLSEVAKTLTNSLKKMGQMTTKEESQCMIARVGGDEFLLRLSGVKTKET 378

Query: 630 IADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           ++ FA  +  S+  PI L      + V AS+G A +  S   S +++K+A++AMY AK  
Sbjct: 379 VSKFASDIVYSLKQPIYLNSVGESVVVGASVGVALFPDSGDASEDLVKSADMAMYSAKEN 438

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQW 744
           G      F     +       I+++L  A+++  +  L+Y P   L    +VG+EALI+W
Sbjct: 439 GKGRYCFFNQKIEQKILARGVIEKELRAAIDDFSQFRLLYQPKFDLKAGHVVGVEALIRW 498

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASK 803
            HP  GNIS  EF+ IAE   +I  +  +++ +  RDI  W       P  ++ IN++ K
Sbjct: 499 QHPTKGNISPIEFIPIAEATDIIHTLGDWIVMQACRDIQEWDLRHHLPPEFYVAINLSPK 558

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  ++     Q    K     +R+ +  +E+ +M +   ++  L  LR +GI + LDDF
Sbjct: 559 QLYGDKALRTFQYQTQKHQVEVTRLHIEVTETALMFDKVSAKKTLDDLRSMGIKVWLDDF 618

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L +L     D +K + S +          A+  +++ MA  +   ++A+ I   
Sbjct: 619 GTGYSSLGFLREFNIDGLKIDRSFVNDLEYDMNDRALCAAVVSMAHQLGIKVVAEGIETT 678

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    L +  CDY Q   +A P+   ++ K L+
Sbjct: 679 VQSSFLAQSDCDYGQGYLLAKPMCAETLSKKLE 711


>gi|315445287|ref|YP_004078166.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
 gi|315263590|gb|ADU00332.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
          Length = 612

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 218/454 (48%), Gaps = 8/454 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  + ++   +   A  D+LTG+ NR++ L  L   L           + +  
Sbjct: 158 IASLFAQVQARVEAETQLRYLAEHDDLTGLNNRRALLSHLDGRLAEGQPGP---VSALFF 214

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +  L  R+ E      ++ARL G+ F ++     +     
Sbjct: 215 DLDRLKAINDYLGHTAGDWFIRVLAERLREGADPRALIARLGGDEFVVVPAGPMDGEAAE 274

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  ++ ++   +++    +T T SIG A     + T+S++L+ A+ A+  AK+ GGN 
Sbjct: 275 LLAHHLQSTLKERVSIDGEMLTRTVSIGVAVGIPGQDTTSDLLRRADQAVLTAKNSGGNR 334

Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F       +     I+  L   +EN  L L Y P I +   +I+ +EAL++W HP  
Sbjct: 335 VTVFTEEMSLKQEFNNDIELHLQSVIENGALLLHYLPEIDMRTGDILAMEALVRWQHPTR 394

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S   F+ +AE + +   +  +++     D   WR         + IN++   L+ + 
Sbjct: 395 GLLSPESFIGVAESINLAGELGRWVMRSACTDFARWRALGIGKDAIMRINVSPVQLVTDG 454

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +  ++ +       + L  +ESVV+ + E +R+ L  L+K G+ + +DDFGT  S 
Sbjct: 455 FVESVAGIVDEFGLEHGSVCLEITESVVVQDIETTRVTLNGLKKAGVLVAIDDFGTGYSA 514

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P DT+K + S +   GS    +AI+R+II +A+     ++A+ +  ++    L
Sbjct: 515 LSHLKSLPVDTLKIDKSFVRELGSDPGDLAIVRAIIALAEAFGLELVAEGVETDVGALTL 574

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLV 960
            R GC   Q   ++ P+  +++  LL + R P+ 
Sbjct: 575 LRHGCHRAQGFLLSRPIPTDAMETLLAQGRIPVS 608


>gi|170719693|ref|YP_001747381.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas
           putida W619]
 gi|169757696|gb|ACA71012.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida W619]
          Length = 706

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/559 (21%), Positives = 247/559 (44%), Gaps = 12/559 (2%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
            ++ + +     +  +  + + +   D   +     P I+ +L      + G  +   L 
Sbjct: 143 LTRELEAARAFNASILENAAEGILVVDAHGNISFANPAISRLLDAPVEQLQGAQLLELLQ 202

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H        +        R+    ++  +R A      + +   P+          + 
Sbjct: 203 LPHATLWS--ESDFHQAYQSRQIFRVHDAHLRTAGGHLVPVALSCAPLPADQ---QAMVV 257

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              D++  +   + +   A  D LTG+ NR+ F     ++L  +   D  +  +M +D+D
Sbjct: 258 TVLDMSVVRNLHQQLEYQAVTDPLTGLLNRRGFYQAAESVLLRNERSDKAQ-ALMYMDLD 316

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND LG   GD VL  +  ++ + L    +LAR+ G+ F  +  S     +   FA
Sbjct: 317 GFKRINDSLGHEAGDRVLGWVAEQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRFA 376

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +++   +   ++ +  SIG A++     T   +L+ A+ AMY AK  G      
Sbjct: 377 EQLLERMSVQRQVAGLDVCLGVSIGIATFPDCGATVEGLLRAADAAMYAAKQAGRGQYRF 436

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +    +     R+M+++ +  AVE+    +VY P +   D  + G EAL++W HP  G++
Sbjct: 437 YDQELNGRARSRLMLEDSVRDAVESQGFNMVYQPQVAFADGHLRGFEALLRWQHPSVGDV 496

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ + EE  +I  +  ++  + A    +W ++   P + + I+++        L +
Sbjct: 497 PPGLFIPLLEEARLITRLASWIYRQGAAQRQAWCERFA-PDLVLGISLSRAQFAMPGLVD 555

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q +I     +P+++++  +E+ +M N + +   + RLR++G+ + LDDFG     L  
Sbjct: 556 ELQRVIQDYRLNPAQLEVEVAETSLMYNIDAAIKQIHRLRELGVRVALDDFGAGDCSLRM 615

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P DT+K +  L+    +     A++RS+I +  +   T+IA+ +  E     L   
Sbjct: 616 LRDLPVDTLKLDRHLVARLPDSAPDAALVRSVIGLCADYNVTVIAEGVETEAQAAWLKAN 675

Query: 931 GCDYIQDSHVASPLGFNSI 949
           GC Y+Q   VA P+     
Sbjct: 676 GCAYVQGFLVARPMTAADA 694


>gi|120556162|ref|YP_960513.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326011|gb|ABM20326.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 774

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 211/440 (47%), Gaps = 8/440 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +         A  D+L+G+ NR+ FLD   +++        L  T++ ID+D++K 
Sbjct: 330 IERLETEHARSSRAASIDHLSGLFNRRQFLDVADSLVLEQRRQRKLS-TMLFIDLDRFKS 388

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L ++  RI  +L   DI AR  G+ F ++L  + +   I  +A A+ 
Sbjct: 389 INDSLGHHIGDLLLQAVAGRIQRMLGKGDIAARFGGDEFVVLLAGDRSEADIEQWAAALT 448

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  L   E+  + SIG A       +  E+ K A+ AMY AK  G      F  S
Sbjct: 449 AHLSAPYMLEGTELNTSPSIGIAISPRDGQSIDELTKCADAAMYSAKKAGRGQYRFFDQS 508

Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              SD     +++    A+ N E  L Y P + L   EI+G EAL++W HP +G +    
Sbjct: 509 LNVSDVEEFHLEQAFVEALRNREFVLHYQPQVCLETMEIIGYEALVRWQHPGFGLLYPDR 568

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+   + A+ + ++      I  W+ +       + +N++   L   + C+ + +
Sbjct: 569 FIPVAEKTGFVVALGMEVVRLACAQISDWKQKHGTSK-PVAVNVSPIQLAQPQFCKDVLS 627

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +S+   +   ++L  +E+ ++    R+   L  L+  GI L+LDDFGT  +  ++L  +
Sbjct: 628 TVSEYGLTTDLLELEITETAMLE--GRAVESLHCLKAAGIRLSLDDFGTGYAGFAHLEAV 685

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + SL+     +     I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 686 PVDKLKIDRSLINRISNSHDDSPIVSSTIILAKRMALKVVAEGVETREQLVHLKVAGCDI 745

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q  H+  P+    I + L+
Sbjct: 746 AQGYHLGRPMPAEKIPEFLR 765


>gi|302873417|ref|YP_003842050.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|307688410|ref|ZP_07630856.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|302576274|gb|ADL50286.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
          Length = 603

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 225/436 (51%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E +   A  D L+G+PNR+   D L  I   +  +++    V++ID+D +KKIND +
Sbjct: 171 KQEEELTFLAHYDTLSGLPNRKMIKDTLEKIRKNALENES-SFAVVLIDLDDFKKINDTM 229

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L ++  R+   +K  DIL R+ G+ F +++ S      I  +   +R ++  
Sbjct: 230 GHHIGDTLLQAVAERLIPFVKEEDILGRMGGDEFALVIQS-QYKEDIFQYLEQLRNNLNQ 288

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
             N+    +   AS G A +        E++K A+ AMY  K  G N++  F+       
Sbjct: 289 DFNIDGNRVRTCASFGVALFPQDSTDDDELMKYADTAMYKVKATGKNNICFFKKEMNDEV 348

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R   ++ L  A+E  EL+LV+ P  RL   E+ G E L++W  P  G +S  +F+ +A
Sbjct: 349 LERTEFEKRLLTAMEEDELFLVFQPQYRLDPLELRGFEVLVRWKSPDMGMVSPMKFIPLA 408

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE+ +I  +  ++L    +   + +D+ ++  + I +NI++  + D    + +++ + ++
Sbjct: 409 EEMGLIVKMGEWILRTACKKFKALKDKYSLDSM-ISVNISAVQIQDEFFVDIVKSALEES 467

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 ++L  +ESV++ + ++   +   L+K+G+ + LDDFGT  S LSYL  +P DT+
Sbjct: 468 GLEGKYLELEITESVLIESIDKVIGVFEELKKLGVHIALDDFGTGYSSLSYLQRLPIDTL 527

Query: 882 KFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    ++++   I+  II +   +   +I + +  E  +  L    CD IQ   
Sbjct: 528 KIDKSFLNHQNTSDENKDIIGGIIFLMHRMGIYVIMEGVEEEFQLNYLKHRQCDCIQGFL 587

Query: 940 VASPLGFNSILKLLKE 955
           +  PL   ++ +LLK+
Sbjct: 588 LGKPLDEPTVEELLKK 603


>gi|330981175|gb|EGH79278.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 464

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R   + + +D +K IN+
Sbjct: 20  RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAGLCVGLDDFKGINE 78

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 79  QFSYQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 138

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 139 EAPFIVGDQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 198

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 199 EMRRRRELEKDLREALPLNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 258

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 259 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 317

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 318 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 377

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 378 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVMTEGCHEGQG 437

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 438 YLYSKPLPGRELLAYLKQ 455


>gi|307322833|ref|ZP_07602139.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306891519|gb|EFN22399.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
          Length = 416

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/421 (28%), Positives = 210/421 (49%), Gaps = 15/421 (3%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR+ F D L         +   R  +M ID+D +K +ND LG A GD VL     R
Sbjct: 2   TGLPNRRQFSDDLD---ARFPVEGVERIALMQIDLDDFKPVNDTLGHAAGDLVLQGTAER 58

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  +L   DI  RL+G+ F +I  S ++       A ++  +   P  +   ++ V AS+
Sbjct: 59  LQAVLGEGDIAYRLAGDEFAVIQRSSSSME-AERLAESIVNAFKEPFTVEGIDVFVGASV 117

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G A          +++K A++A+Y AK+ G     SF  S          ++  L +A++
Sbjct: 118 GIAIALEDGNDGEQLMKAADIALYAAKNDGRGRARSFNRSMLIMLEQREMLRRSLRVALQ 177

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             + +L Y P+I    + IVG EAL++W HP  G +  + F+ +AE   ++  I  ++LE
Sbjct: 178 ERQFFLEYQPLI--ETDAIVGFEALLRWQHPYAGIVPPAVFIPLAEADGLMGEIGEWVLE 235

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +  R  ++W +        + +N++  + L   L + +   +     SP R++L  +ESV
Sbjct: 236 QACRQAVNWPEH-----FTVAVNLSPAEFLRKGLTDRVANTLDSAGLSPERLELEITESV 290

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEK 894
           ++     +   L  L  +GI ++LDDFGT+ S L+YL   PFDT+K +   +    + EK
Sbjct: 291 LLERTANNLDTLHTLEVMGIRISLDDFGTQYSSLAYLKNFPFDTIKIDRYFIKDVETDEK 350

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             AI+R+I+ +A  +   + A+ +        L ++ CD +Q + + + +  +SI   L+
Sbjct: 351 SQAIVRAIVALAHGLGMRVTAEGVETAAQAAWLRKLRCDRLQGNLLGAAMPPDSIRNFLR 410

Query: 955 E 955
           +
Sbjct: 411 Q 411


>gi|220933308|ref|YP_002512207.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994618|gb|ACL71220.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Thioalkalivibrio sp. HL-EbGR7]
          Length = 845

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/578 (20%), Positives = 241/578 (41%), Gaps = 22/578 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL- 440
           +    I  +  +    + +    +RQ+  +  +GD ++  D         P    ILG+ 
Sbjct: 245 LFLARIGALWRSIRAHKAVALSHQRQAAILESAGDGIYGVDREGRITFINPAACRILGIR 304

Query: 441 ASGSMHGPIRNWLPY-IHINDR----DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
               + G   + L + I+   R    +          G   G  +  FR      +   +
Sbjct: 305 DPDEVLGQSAHVLFHGINRQGRPVPPERCPLSQAYASGEVMGGWETVFR--HRSGRLIPV 362

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              I P+S++  +    +    D++E+      +   A  D L G+ NR+     L    
Sbjct: 363 AGSIHPLSDAFRESGSVVA-FQDVSERNAMEAQLHWQAEHDELIGLYNRRYLERSLEAEQ 421

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                  + R  ++++D+D++K IND  G  VGD +LV ++ R+   L    +LARL G+
Sbjct: 422 ARCQATGH-RSALLLLDLDRFKYINDTAGHPVGDSLLVEVSHRLRAHLGEGPVLARLGGD 480

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEML 674
            F +IL  + +   +   +  +R+ +      + ER   +  SIG A   +++ T++++L
Sbjct: 481 EFAVILP-QTDPQALEKLSGGLRRLLHESTFRVDERNYRLNLSIGAAWLGNARETAADVL 539

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCLAVENSELYLVYHPI--I 728
            +A++A + AK  G N    +  +          +   + L  A++ ++  L Y PI  +
Sbjct: 540 ASADIACHAAKRAGRNQFHVYDPNRDERAFMGRDLAWADRLREALQQNQFQLHYQPILPV 599

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                     E L++ +          +F+ +AE   ++  I+ + L+R    +     Q
Sbjct: 600 MPQTTSREHYEVLLRLEIAPQVLTLPGDFIPVAERFGLMPEIDAWALDRALAVLRDLHGQ 659

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                +   +N++ + L D    E ++  +  +    + +    +E+  + N   +R  +
Sbjct: 660 GRE--VVFNLNLSGRTLSDIPTLERIRDRVLGSGLDLTCLVFEITETCAILNLAAARAFI 717

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMA 906
            RLR  G+   LDDFGT    +S+L  +P D VKF+G  +          A++ ++  + 
Sbjct: 718 DRLRAHGVRFALDDFGTGFCSMSHLKQLPVDVVKFDGQFVRELHLDATDRAMVAAMNDIV 777

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +    +A+ + G   +  L  MG DY+Q  ++  P+
Sbjct: 778 HAMGLKSVAEYVEGPEVLACLQAMGVDYVQGFYLGHPV 815


>gi|332707426|ref|ZP_08427475.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332353777|gb|EGJ33268.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 578

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 206/438 (47%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KK    +      D +T +PNR    +R   +L          P V+ +  D+  +IN
Sbjct: 132 ELKKVQAQLNYLLRYDQVTNLPNRLLLEERFNQLLLQRQGRYRRLP-VLSLSFDQLNQIN 190

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG   GD +L ++ +R+   +   D +A+L  ++F I+L +  N  +I   A  +  +
Sbjct: 191 NTLGPVSGDLLLQAVAKRLLGRVGPLDTVAQLGIDQFVILLATTINQTEIGQMAETLIDA 250

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +++P  + E EI +T  IG A +    +  + ++ +A  A  +A  +G    E +  S  
Sbjct: 251 LSLPFTIGEYEIVLTPRIGIACFGRDALDLNTLITHANGARENAGQKGQKAYEFYIASIG 310

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + ++  L  A+   EL + Y P + L   EI G EALI+W H   G IS ++F+
Sbjct: 311 DKSQQALWLELQLRQALPKDELQVYYQPKVNLRTGEIEGAEALIRWHHRALGAISPAKFI 370

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  +  ++L +       W+ Q    P+ I +N++        L   + A++
Sbjct: 371 PLAEKTGLIVPLGEWVLRKACTQAKLWQTQGL-SPVQIAVNLSGHQFNQPNLSNSILAIL 429

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P  ++L  +ES +M NP  +   L  L+  GI +++DDFGT    LSYL   PF
Sbjct: 430 EETELDPRYLQLELTESTLMDNPNHAIATLKELKSFGIQISIDDFGTGYCSLSYLRLFPF 489

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   TE     AI  +I+ MA ++   ++A+ +     +  L    CD IQ
Sbjct: 490 DVLKIDRSFVCQLTEDVKNEAITTAILQMAHSLNLKVVAEGVETASQLAFLCGHKCDEIQ 549

Query: 937 DSHVASPLGFNSILKLLK 954
               + PL   +  + L 
Sbjct: 550 GYCFSPPLSAPTFTEWLS 567


>gi|304394245|ref|ZP_07376168.1| ggdef domain protein [Ahrensia sp. R2A130]
 gi|303293685|gb|EFL88062.1| ggdef domain protein [Ahrensia sp. R2A130]
          Length = 784

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/693 (18%), Positives = 280/693 (40%), Gaps = 38/693 (5%)

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            RW      +             ++ Y     A     T+    L           + + 
Sbjct: 89  RRWELHHTLLATFYALMFGAWCAVATYTGNQFALFTAFTVTFANLIG------VSGRAFP 142

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
              L+    I   +  I   + I            L+   ++ V+L+      ++L    
Sbjct: 143 IKRLVNGQAIAASVPLIACLVWIGGMYA---WLAILLTPYLISVMLLAQRQRGNLLENVI 199

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             Q   +   R   A+      +  +D           IA  +G++   + G     L  
Sbjct: 200 QRQTAQALASRIHTALENIPQGMCMFDADGTTQVVNEQIARFVGMSQDDLLGKPLPELAL 259

Query: 456 IHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              +    DR+ F           R      F +           +R + +   NG    
Sbjct: 260 RFQSAFNLDRETFDRYDQWMASGERSSFSATFTLERKG----TCTVRFKSVRLENG---G 312

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +   +D+T++ ++   I      D LTG+ NR    + +T  L+ +      +  VMV 
Sbjct: 313 IVITMDDVTDEVRAARQIDYMKRFDTLTGLMNRNEVPNHITAELNHAIA--GQQVAVMVF 370

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           +ID++K++ND+ G+ +GDD++ +   ++ +++      AR  G+ F ++L +   +    
Sbjct: 371 NIDRFKELNDLHGMRIGDDLVCAFAEKLEQIVGPRGNCARFGGDEFVVVLRAPRCADLAR 430

Query: 632 DFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKIT----SSEMLKNAELAMYHAK 685
             A  + ++  MP  +   ++++ V  SIG A               +L  A +AM  A+
Sbjct: 431 HVADLVSEATDMPWIVGPTKQKLDVGTSIGIAVSDEENHRKPSYCDALLTEAAVAMAVAR 490

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
               ++ + F     +       ++EDL  A++N EL   + P++  +  ++   EAL++
Sbjct: 491 RSASSNWQIFNQQMRQDMEQQHKLQEDLRSALDNGELEPFFQPLVSTVTGQVTTCEALLR 550

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       +    F+ +AEE+ +I +I  F++    +   +W D      I + +N++  
Sbjct: 551 WRRANGDLVPPGIFIPVAEEMGLISSIGDFIIHESCKICATWPD-----NIRVAVNLSPL 605

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              + +L   +   + K+  +  R++L  +ES+++ + E +  +L  L+  G+ ++LDDF
Sbjct: 606 QFHNGKLLRVVDEALIKSGLAADRLELEITESLMLNDVEATISVLQSLKDRGVRISLDDF 665

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSY+  +P D VK + S +      E+ +++++++  +++ +   ++ + I  +
Sbjct: 666 GTGYSSLSYMNQLPLDKVKIDRSFVVNLQTDERSVSMVQAVTSLSQKLGLKVVVEGIETD 725

Query: 922 IDIKELTR-MGCDYIQDSHVASPLGFNSILKLL 953
             +  L      D IQ  H + P   +++ + L
Sbjct: 726 EQLALLLAKAPVDEIQGYHFSRPQDASAVARQL 758


>gi|218515591|ref|ZP_03512431.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 482

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/449 (24%), Positives = 208/449 (46%), Gaps = 13/449 (2%)

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E  ++  + +   + +    +     +    +    D+TE++++ E I   A  D LT 
Sbjct: 3   GETLLKTRNGREIAVEVNTSRIVYRGHNCD--VLAVRDLTERRQAEEIIEHLAHHDVLTD 60

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  F  R+   L ++    N    +  ID+D++K +ND+ G A GD +L  +   + 
Sbjct: 61  LPNRSLFDKRIRQALQMAK-GKNSEVALFYIDLDRFKTVNDIFGHAEGDRILCKVAAILR 119

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            +    D +ARL G+ F II  +          A A+    A  +++      V  S+G 
Sbjct: 120 RVADERDTIARLGGDEFAIIQSAGQQPAAAQKLAAAILDEFAAEMDMARDPTAVGVSLGI 179

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAV-EN 717
           A + +      E+  NA++A+Y  KH  RG     +  +      R  I+ +L  A    
Sbjct: 180 ALYPADGSDPDEICNNADIALYRVKHGGRGKACFINAEMDEATRARRQIESELRHAHYSQ 239

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
           S+   +    +     EI G EAL++W+ P  G      F+ IAEE   I  +  ++L++
Sbjct: 240 SDPCQLSARFLMHRAGEISGYEALMRWNRPGHGLSEPDIFIPIAEESGSIVQLGEWVLQQ 299

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             ++   W D     P+ I +N++    +   LCE ++A++ +T  +P+R+++  +E+ +
Sbjct: 300 ACKEAARWPD-----PLRIAVNVSPVQFMLPNLCERIEAILKETGLAPARLEIEITEAAL 354

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897
           + + +R    L RLR +G+ + +DDFGT  S LS L   PFD +K + S          A
Sbjct: 355 IRDRDRVMATLQRLRSLGVHIVMDDFGTGFSSLSNLRTFPFDKIKVDRSFTGMLEHDAAA 414

Query: 898 --ILRSIIPMAKNIETTIIAKDIYGEIDI 924
             I+R+II +  ++   ++ + +  E   
Sbjct: 415 RSIVRAIIGLGHSLGMPVVTEGVETEAQR 443


>gi|332991692|gb|AEF01747.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 668

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 215/441 (48%), Gaps = 12/441 (2%)

Query: 518 DITEQK-----KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           DI ++K     +    +   A  D LTG+PNRQ  +  L+  L  +   +  +  +M +D
Sbjct: 218 DINKRKTLLLERQQSQMEKLANFDTLTGLPNRQYLMKSLSIELARAKR-EKSQVALMFLD 276

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K++ND  G   GD +L  ++  I + ++  D++ RL G+ F IIL+    + ++  
Sbjct: 277 LDGFKQVNDSYGHDAGDKLLCGISSEISDAMRDGDVVGRLGGDEFLIILVGNPTNSQLEA 336

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   I    ++    +  + SIG A  T S   +S ++ NA++AMY AK+ G    
Sbjct: 337 IAKRLISKITKLDHIDGWRVDPSVSIGIALATDSDYAASTLVTNADVAMYKAKNEGKGRY 396

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  S     R  I+    L  A+EN E +LVY   +     ++VG EAL++W   + G
Sbjct: 397 VWFTASMQEETRRKIQVATHLPQAIENDEFHLVYQAKVNSK-GKVVGFEALLRWFDNELG 455

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           NIS +EF+ IAE+   I  I L+++ +   +I    +      I + IN+++ DL +  +
Sbjct: 456 NISPAEFIPIAEQSDRISEITLWVIVQACLEIPHISEHYG-EDIRVSINLSAYDLKNVHV 514

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E +   +       + ++   +ES  M N   +   L  L+K G  ++LDDFGT  S L
Sbjct: 515 TEFILEGLRSGGIPRNNVEFEITESAYMNNFSIANAFLAELKKEGCKISLDDFGTGYSSL 574

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+     DT+K +   ++     + +  I  +II MAKN+   + A+ I        LT
Sbjct: 575 SYITEFNIDTLKIDRQFVSQIGTSKRSELITITIIEMAKNLNLNVCAEGIETHEQSAFLT 634

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
             GC+ +Q    + P+  +++
Sbjct: 635 ENGCNILQGFLYSKPIPLDAL 655


>gi|294664740|ref|ZP_06730069.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605494|gb|EFF48816.1| GGDEF family protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 695

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/422 (26%), Positives = 206/422 (48%), Gaps = 7/422 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G A+GD +LV
Sbjct: 263 LHDPLTRLPNRILLHEHLVQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHALGDRLLV 321

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+ 
Sbjct: 322 VVAERLNAHRRAHGSLARLGADEFV-LVADIVDPEDAAALAAHLVQALAVPFLVANHELR 380

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           +++SIG A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L
Sbjct: 381 LSSSIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQEL 440

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  + 
Sbjct: 441 PRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLG 500

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +  R +  WR   +     + +N+++  L    L + +   +S+   +P ++ L 
Sbjct: 501 SWVLRQACRQMRDWRQAGHG-DWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLE 559

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +   
Sbjct: 560 ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAM 619

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     
Sbjct: 620 DGSAEDIAIVAAVVALAHTMRLQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERF 679

Query: 950 LK 951
           + 
Sbjct: 680 IA 681


>gi|298488574|ref|ZP_07006604.1| GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156915|gb|EFH98005.1| GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 683

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQIGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++        + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQAKIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGEQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPGNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETLEQEAYIVTQGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|257486399|ref|ZP_05640440.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289625674|ref|ZP_06458628.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289647254|ref|ZP_06478597.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330870177|gb|EGH04886.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|331009888|gb|EGH89944.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 683

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  ++ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQIGLDRILEDAGRQQH-RVAILCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++        + A+ A  +   +
Sbjct: 298 QFSYQAGDQLLLALADRLRAHSGRLGALARLGGDQFALVQAKIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E++I + A+IG   +      + ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGEQQIRLRATIGITLFPEDGDNTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPGNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETLEQEAYIVTQGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|254383202|ref|ZP_04998555.1| phosphodiesterase [Streptomyces sp. Mg1]
 gi|194342100|gb|EDX23066.1| phosphodiesterase [Streptomyces sp. Mg1]
          Length = 741

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 216/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 294 LRDPLTGLPNRQWLLERAWTALDEAERL-GTRSALVLIDLDRFRAVNDTLGHLAGDRLLL 352

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+ + L      ARL G+ F ++L   +++      A  +   ++ P++L    + 
Sbjct: 353 QIADRLRQALPPDAEAARLGGDEFAVLLPVADSTTSAQRVARHLVAELSSPLDLDGLTLV 412

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 413 LEASAGLAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 472

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D  + GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 473 RALDAGEVELHYQPKVRF-DGHVAGLEALVRWVHPERGRVPPDEFIAIAETSGLMPHLTE 531

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++     S ++L  
Sbjct: 532 YVLETALAQVARWRAQGLKVP--VAVNVSPRDVHTPGFAGAVAARLARHGVPASGLQLEI 589

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   +  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 590 TEHVLLEDPQRAADTMAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 649

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 650 VDAQDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPQEAT 709

Query: 951 KLLKER 956
             L  R
Sbjct: 710 AWLLAR 715


>gi|326796109|ref|YP_004313929.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546873|gb|ADZ92093.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 679

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 215/445 (48%), Gaps = 12/445 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   I   A+ D+LT +PNR+  ++ LT  ++ S     L   VM  DID++K IN
Sbjct: 228 ERDDAEAQIHKLAYFDSLTQLPNRRLLIEMLTRDIE-SHAATKLHGAVMYFDIDRFKTIN 286

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA---- 636
           D LG ++GD +L  + +R+ E++      AR  G+ + ++L     + +    A+     
Sbjct: 287 DSLGHSIGDLLLCEIGKRVLEVIPKSATCARFGGDEYVVLLSDMGLNREACSLAVKDVAS 346

Query: 637 -MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + K ++ P+ +    +  T SIG A +     T  ++++ A+ A+Y  K  G N  + F
Sbjct: 347 TLLKRLSEPMEIEGNVLHCTVSIGIALFPEKGNTCLDIIRRADTALYGVKAAGRNGYQFF 406

Query: 696 RVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                R     +   E + +A+   +  L + P +          EALI+W HP  G + 
Sbjct: 407 DQEMQRVASQQLSIVEGIHVALAEQQFELWFQPQLDAK-GRTTAAEALIRWRHPVQGLVY 465

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCE 812
            ++F+ +AEE   IK I L+++E   R +  WR          + IN++    ++     
Sbjct: 466 PNDFLEVAEESGQIKRIGLWVIEEACRLLAGWRTTGLPECFERVSINVSPSQFIEGSFIA 525

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +     S ++   +E++++ N E +   +  L+++GI+  +DDFGT  S L Y
Sbjct: 526 RVIEILERHDIPGSMLEFEITENMLIRNFEIASTKMATLKELGITFAIDDFGTGYSSLKY 585

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + S +T   ++    +I+  I+ MA+ ++  +IA+ +    + + L ++
Sbjct: 586 LSNLPLDVLKIDRSFVTNLHQESSETSIVELIMAMAQKLDLRVIAEGVSSVAEKECLDQL 645

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC + Q    + PL      K LKE
Sbjct: 646 GCRFYQGFLFSRPLKAELFYKDLKE 670


>gi|89902691|ref|YP_525162.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Rhodoferax ferrireducens T118]
 gi|89347428|gb|ABD71631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Rhodoferax ferrireducens T118]
          Length = 1135

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 224/469 (47%), Gaps = 8/469 (1%)

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +  ++ S  D+   I       EQ+K  + +      D LTG+PN   F + L   +D +
Sbjct: 656  VTLLTESADDLAFGIATLRARAEQQKIQQAMERLTRYDALTGLPNETQFTEFLAAAIDAA 715

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
               +     V+  ++++  +IND LG   GD +L     R+        ++ARL G+ F 
Sbjct: 716  KRLNQ-PFAVLQANVERLSEINDALGFGHGDQLLREFGARLCVAAPASAMVARLRGDEFA 774

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            I+L   +N+  +      +   +A P  + +    V+A IG A +     T  ++ ++ +
Sbjct: 775  ILLPD-SNANSVITMLQRVEDVLAQPFPVADIAPDVSAKIGVALFPQHGATPHDLFRHMD 833

Query: 679  LAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            +A++ AK +G  + +    ++  +S R+ +  +L  A+E  +L L   P + +    + G
Sbjct: 834  MAVHQAKKKGVKHAIFDPDLNQDQSRRLTMAGELRRAIEGGDLLLYLQPKVEITTGRLCG 893

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++W H + G I   EF+ +AE+  +IK +  ++++   R   +W+ +     + I 
Sbjct: 894  AEGLVRWKHAERGLIPPGEFIGLAEQTGLIKPLTEWVIKTSLRLNQAWQYEG--CALPIA 951

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            +N+++ +L D  L + ++ L +    +   ++L  +ES VM + E +  +L  LR  GI 
Sbjct: 952  VNLSAHNLHDERLLQTIRHLQTTYGVAAGLLELENTESAVMDDAEFALRVLHSLRDEGIP 1011

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL  +P + +K + S +     +     I+RS I + +++    +A
Sbjct: 1012 LYIDDFGTGYSSLSYLQKLPVEYIKIDQSFVRDMTISRDSSLIVRSTIDLVRDLGRKTVA 1071

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKNT 963
            + I  +    +L   GCD  Q   +A P+        +K+ R P+   +
Sbjct: 1072 EGIETQEQWDQLAACGCDIAQGYFIARPMPAEDFQNWVKQFRAPVTTPS 1120



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 44/149 (29%), Gaps = 2/149 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + +  T    + +    E  S  +   GD V   D         P    + G      
Sbjct: 206 IRRQLRETEASRRALADSEESLSTTLYSIGDAVLATDTEARITRMNPVAEALTGWPFADA 265

Query: 446 HGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G         ++ + R+     +   +       L     + A D     +     P+ 
Sbjct: 266 QGRPVEEVFRIVNEHTREPAEVPVAKALATGEIQELANHTVLIARDGSERPISDSAAPIR 325

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
           ++ G +   + +  D+T   ++ + I   
Sbjct: 326 DTRGRVGGVVLVFRDVTIAHQAQQTIREQ 354



 Score = 39.2 bits (90), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 36/134 (26%), Gaps = 8/134 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +    +     +     ++   D  +  +            + G      +     +  
Sbjct: 368 QLHESEDHLRSVISNVPVMIAYVDAQQRYIYVNQSYRERF--SPGQADIAGQTVRDILGH 425

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                   ++   +  +          +       W ++   P  ++   ++ Y  +  D
Sbjct: 426 ERYAVAAPLIAKVLQGQPQSYD----WQPFPG--VWQLVNYVPKRDAREGVVGYYVLGTD 479

Query: 519 ITEQKKSLEGILCN 532
           +TE+K + E I   
Sbjct: 480 LTERKHAEEKIRTL 493


>gi|188991601|ref|YP_001903611.1| Putative sensor protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167733361|emb|CAP51562.1| Putative sensor protein [Xanthomonas campestris pv. campestris]
          Length = 696

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 219/443 (49%), Gaps = 7/443 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + ++  A  D LT +PNR    + +   ++    D   R  VM+ID+D +K +ND  
Sbjct: 254 QANQELVLAALHDPLTRLPNRVLLHEHVLQSIERGQRDGQ-RFAVMLIDLDGFKAVNDGY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+++ +R+G   +    LARL  + F  ++    +    A  A  + +++A+
Sbjct: 313 GHQLGDQLLIAVAQRLGAHRRAHGSLARLGADEFV-LVADIADPEDAAAIAGHLVQALAL 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P  + + E+ +++S+G A +     +  +++ +A+ AM HAK  G N    F  S     
Sbjct: 372 PFLVGDHELRLSSSVGIALYPEDAGSEHQLMTHADAAMGHAKQAGRNRYSFFDRSMTGTT 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ + +DL  A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +A
Sbjct: 432 RERLQLLQDLPRALELGQFALHYQPKYCAEDGRPLGAEALIRWLHPERGMVPPDSFIPLA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   MI  +  ++LE   R + +WRD  +     + +N+++  L    L   + A ++  
Sbjct: 492 ERSGMIGPLGKWVLEEACRQMRAWRDAGHG-DWRVAVNLSATQLASPSLPAEVAATLAAH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++ L  +E++ M + +     LG+L  +G+ + +DDFGT  S L YL  +P   +
Sbjct: 551 AIAPGQLTLEITETMAMRDADACLRTLGQLTDLGVRIAIDDFGTGYSNLLYLRKLPAHEL 610

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   
Sbjct: 611 KIDRSFVQAMDSGPEDIAIVAAVVALAHTMRLQVVAEGVETPAQRNTLERLGCDQLQGYL 670

Query: 940 VASPLGFNSILKLLKERFPLVKN 962
           +  P+     + L+  +    + 
Sbjct: 671 LGRPMEPERFIALVVAQRDGERR 693


>gi|153002326|ref|YP_001368007.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|217974914|ref|YP_002359665.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|151366944|gb|ABS09944.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|217500049|gb|ACK48242.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
          Length = 577

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 207/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +    +    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDY-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+ +  R+ E+L+  DI+ARL G+ F +++   +        A  + K 
Sbjct: 187 DTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANRLLKV 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A++ +E  + Y   +     ++VG+EALI+W HP  G I+  +F+
Sbjct: 307 KEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQA--NMPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ ++  I+ ++LE+       W  Q         I +N+++  + +  L + +  
Sbjct: 367 PIAEEIGLMDDIDDWVLEQACTQAQVWLAQLQPLGQEFTIAVNLSASQIGNENLFDKIVH 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++KT      ++L  +E+ ++ +P     +L R+  +G+   LDDFGT  S L ++   
Sbjct: 427 TLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ +      +  T   C  
Sbjct: 487 PISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCTARHCTV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL   +   
Sbjct: 547 LQGYLFSRPLDAAAFEA 563


>gi|120612928|ref|YP_972606.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120591392|gb|ABM34832.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 772

 Score =  428 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/431 (29%), Positives = 225/431 (52%), Gaps = 8/431 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I   A  D LTG+PNR+ F   L   ++          +V+ +D+D++K++NDVLG 
Sbjct: 335 QDEIRQLADTDRLTGVPNRERFRRMLMEAMEHGGRSGE-PLSVIALDLDRFKQVNDVLGY 393

Query: 586 AVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           A+GD +L ++  RI   L+   +++ARL GN F ++L    +     D A  + ++   P
Sbjct: 394 ALGDRLLQAVVARIASHLRAQREVVARLGGNEFAVLLPG-ADEASARDTAQRITRAFESP 452

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSD 703
           +   ++ + ++A IG A W      +  +L +AE+AMY AK R  G  +    + S  ++
Sbjct: 453 LVFDDQMVDLSAGIGIACWPGPAHDADTLLGHAEIAMYAAKRRLHGAQIYDPSMESSSAE 512

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + +  +L  AVE  EL L   P +RL  +   G EAL++W HP  G +   +F+  AE+
Sbjct: 513 ALSLLSELRRAVEAGELRLFLQPKLRLDGQGGSGAEALVRWQHPVRGLVPPMQFIPFAEQ 572

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              ++ + L++ E+ AR +   + Q     + I +N++++DL+D +L   +  L+++   
Sbjct: 573 TGFVRQLTLWIFEQAARYLARPQVQGLG--LRISVNLSTRDLMDTDLSTRLGTLMARHGV 630

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P    L  +ES +M +P R+  +L RL   G  L++DDFGT  S L+YL  +P D +K 
Sbjct: 631 EPGSFCLEITESAIMDDPGRAEAMLNRLSAQGFKLSIDDFGTGYSSLAYLKRLPVDELKI 690

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S + G         I+RS I +A N+  +++A+ +     +++L  + CD  Q  H+ 
Sbjct: 691 DKSFVMGMAADAGDAQIVRSTIDLAHNLGLSVVAEGVESAAILEQLRGLRCDEAQGYHIG 750

Query: 942 SPLGFNSILKL 952
            P+  +  L  
Sbjct: 751 RPMPADDFLAW 761


>gi|192359514|ref|YP_001981267.1| putative signal transduction protein [Cellvibrio japonicus Ueda107]
 gi|190685679|gb|ACE83357.1| putative signal transduction protein [Cellvibrio japonicus Ueda107]
          Length = 867

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/577 (20%), Positives = 242/577 (41%), Gaps = 23/577 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +Q +       + ++    +    +     +V + D              ++G A G  
Sbjct: 293 RVQSLQERERAYRQLYQSHHQL---LDDLQTVVMELDDQLAIQFLNRAWEHMMGFAIGES 349

Query: 446 HGPIRNWLPYIHINDRDN---FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            G   +   +I  + R      R  +   +         E  +R +     W   ++   
Sbjct: 350 LGRNLD--EFIVSDQRAQWTLARERMRRTLLDHEPCADLELCLRDSRGHRLWAQFKVSLS 407

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           S       R     +++TEQ+ + E +   A  D+LTG+ NR  F   L  +   +  + 
Sbjct: 408 STGESQP-RLTICLDNVTEQRAAQEQLKYLAMHDSLTGLNNRHFFETSLKQLTADALRNH 466

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ ID+D +K IND  G   GD+VL  +   +   ++ PDI  RL G+ F ++L 
Sbjct: 467 RQHG-LVYIDLDHFKVINDSFGHQKGDEVLREVAHLLRRRIRRPDIFCRLGGDEFAVLLH 525

Query: 623 SENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +  +  +FA  +++  +        + I +  SIG     +S   + E L  A++A+
Sbjct: 526 DV-SQQQAEEFARDIQQLASEFNFQSQGQRINLGCSIGLTLINNSTERAEEHLMRADIAL 584

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           Y AK RG N +  +      SD +     I   +  A+  + + L + PI  +   ++  
Sbjct: 585 YVAKGRGRNLIHVYDPEDSESDDLRNRLNISRQVREAINENRILLHFQPIFDVNAGQVAY 644

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++    +   ++  +F+   E    +  ++  +++     + S+        + I 
Sbjct: 645 YEALVRVRTREGTLLAPGQFIPAMESSGDMHLLDRRIIQLALHTLKSYPSL-----VHIA 699

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++++   D  L   +   + +T  +P R+    +ES  + N   ++ ++  L ++G S
Sbjct: 700 INLSAQAFKDESLLPAIVDTLKETGITPERVTFELTESASLFNLRTTQRVITELHQLGCS 759

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            ++DDFG+  S  +YL  +P D +K +GS +    +      ++RS+I + + +    +A
Sbjct: 760 FSVDDFGSGFSSFAYLKDLPADYIKLDGSFIQNLHQDPVDQTLVRSMIQVIQALGKKAVA 819

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +     +  L  MG D++Q  H+  PL    +L L
Sbjct: 820 EYVENAEILSLLKTMGIDFVQGYHIGHPLPVEQVLAL 856


>gi|312126773|ref|YP_003991647.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776792|gb|ADQ06278.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 577

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/565 (20%), Positives = 251/565 (44%), Gaps = 30/565 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS--GSMHGPIRNWLPYIHINDRD 462
           ER   A+  S    W +DI   ++  +  +  +   +         +     +IH     
Sbjct: 22  ERFEQAIK-SERGFWLYDIKEKKIYLSDGVVYLTIQSENIEDYVKKLMAENEFIH----- 75

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               +    +  ++       RV+  + ++ ++      +    G   R +G   D+T  
Sbjct: 76  -LLNLAKESIENKQNGFS--IRVKLKEGRWIFVCAT---ILYKKGIPFRIVGTFEDVTPH 129

Query: 523 K----KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
                +    I   A+ D++TG+PNR    +++   ++ S   +N +  V+ I++  +  
Sbjct: 130 VSCDLRLNRYIELIAYYDDVTGLPNRNFLNEKIRERIEESKK-ENSKFWVIFIEVGNFSY 188

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G AVGD+ L S+   I + L    I +R  G+ F ++         +      + 
Sbjct: 189 INEIFGHAVGDEFLKSIAMEIKKFLPREWIFSRFGGDEFVVVTTDV-EKASVVQIVENLV 247

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH------V 692
           +  +   +++ + +    +IG A +      +  +L+NAE+A+  AK RG +        
Sbjct: 248 ERFSRSWSVMGKWLYTNINIGIAGYPQDGTEADTILQNAEIALTMAKKRGKDMGKSLYEF 307

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               ++     RV I+ ++   ++N + +LVY P +      +VG EAL++W+  + G +
Sbjct: 308 YERSMTEEILRRVEIESEILRGIQNKQFFLVYQPKVSRDGRTVVGFEALLRWNS-QRGIL 366

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +  +F+ IAEE  ++  +N  +L+ + RDI  +  +     + + IN++ K+     +  
Sbjct: 367 TPDKFIQIAEESGLVYDLNRLILDIVCRDIK-YIKENGFKKVPVAINLSGKEFAMYNMIG 425

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   + K   +   I++  +E +++ N E S+ +   L + GI +++DDFGT  S L  
Sbjct: 426 ILSEYLEKHDVTSKDIEIEVTERIILNNLELSKEIFNELYEKGIKISIDDFGTGYSSLEL 485

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K +   ++          I+++II MAK +    IA+ +  +   + L  +
Sbjct: 486 LLTLPIHALKIDKKFISRIEFFGNEYVIVKNIIYMAKEMNLKTIAEGVERKEQYEILKEL 545

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD  Q  + + P+    + +L K+
Sbjct: 546 GCDEFQGYYFSKPMRIEEVAELRKQ 570


>gi|126737970|ref|ZP_01753700.1| diguanylate cyclase/phosphodiesterase [Roseobacter sp. SK209-2-6]
 gi|126721363|gb|EBA18067.1| diguanylate cyclase/phosphodiesterase [Roseobacter sp. SK209-2-6]
          Length = 628

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/457 (26%), Positives = 224/457 (49%), Gaps = 9/457 (1%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ +  ++ + + + ++   +   A  D+LTG+PNR     +++ +      D+  R  +
Sbjct: 175 IVGFASVSIETSLEIETKNQLEKAALHDHLTGLPNRMCLTQKMSEVASRLTIDERERVAI 234

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D +K++ND+ G A GD VL  +T+R+   L+  + LAR  G+ F  I  +     
Sbjct: 235 LNIDLDLFKEVNDLYGHAAGDKVLQVITKRLAASLEEDEFLARSGGDEFVAIKRNFRRIG 294

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++  FA  +   I+ P+++     T+ ASIG A+         E+L  +E+AM+ AK   
Sbjct: 295 QVMTFAERLHCLISEPVDIGTVSTTIGASIGVATSFEDGRDVRELLHKSEIAMFRAKEDP 354

Query: 689 GNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             HV  F   +     D++ +  DL LA    E  LVY     L   E  G E L++W+H
Sbjct: 355 ATHVALFSLEMDQQSRDKIRMIGDLRLACARDEFELVYQLQNDLSSLEPTGFEVLLRWNH 414

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G IS   F+ +AEE  +I+ I L++L    ++  SW       P  I +N+A + L 
Sbjct: 415 PVRGVISPVVFIPLAEETGLIREIGLWVLRTACKEAASW-----YKPYKIAVNVAPQQLA 469

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                E +  ++ +T   P R++L  +E+ ++ +      ++ +L+++GI + +DDFGT 
Sbjct: 470 QASFVEHVSDILMETGLQPERLELEITEASIIDDQAHCLKIMRQLKEMGIRIAMDDFGTG 529

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LS L   PFD +K + S +    +     AI+RS + + + ++  ++A+ +    ++
Sbjct: 530 YSSLSTLQVFPFDKIKIDRSFIKDVHKDHQRAAIVRSTLLLGQALDIPVLAEGVEYADEL 589

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             L R  C  +Q      P+      +++ +     K
Sbjct: 590 TFLQRENCQSVQGFFFGKPMSLEKAREIVAKPESSTK 626


>gi|329912117|ref|ZP_08275678.1| Complex sensory protein with histidine kinase domain
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545708|gb|EGF30851.1| Complex sensory protein with histidine kinase domain
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 744

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/556 (23%), Positives = 259/556 (46%), Gaps = 17/556 (3%)

Query: 409 LAVLGSGDIVWDWDIVR---DRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDN 463
           LA+  S   V            +       ++ G     + G I  ++     ++  R  
Sbjct: 22  LALDVSHCGVLVLSNATENYRVLYANAAFLSMTGYTETELAGRIDWYVQGDAGDEPQRKK 81

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R  + +           + R    D   HW  + I P  N  G +  +IG+ +DIT +K
Sbjct: 82  LRAAMSA-----TQPTSIDMRSYRKDGSLHWCELGITPFRNHEGYVSHFIGMLSDITTRK 136

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              + +   +    LTG+ +   F D L T +  S     L   V  IDID+++  +  +
Sbjct: 137 NDEQLLPQASRHAGLTGLTDHLGFRDTLDTAISASGGSP-LTLYVAAIDIDQHQHASGSM 195

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
                + ++     R+G  L+  ++L+      + I+L +++ S  I     A+++S+  
Sbjct: 196 HGQSQNLLVQVAAERLGTCLQTDEMLSHDGNGSYAIMLRADSRSDAITR-CQAIQRSLTR 254

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
            I L ++++ +T + G A +      +  +L  A +A+ HA+    N +  +   +S   
Sbjct: 255 SIALDDQQVHLTCAFGLAIFPDDSRDARALLNYAGVALSHARETSRNSILFYLEAMSVRL 314

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R  ++  L  A+ N EL + Y   + L    + G+EAL +W+HP+ G ++   F+ +A
Sbjct: 315 HERTTLESALRSAMVNGELEVHYQAQVNLHTGRVAGVEALARWNHPELGRVAPDRFIPLA 374

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I L+++E++  D+ +WR+ +  P + + +N+++    +  L + +  L++ +
Sbjct: 375 EKNGLIDDIGLWVIEQVCTDMAAWREHSL-PVVPVAVNVSAAQFRNPLLGDQIMMLLNLS 433

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS + L  +E+V+M +   +R  L +L   GI L+LDDFGT  S +SYL   PF  V
Sbjct: 434 GCDPSMLTLEITEAVLMDDTSTARATLNQLHHAGIGLSLDDFGTGYSSISYLKRFPFKKV 493

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
             + S +          AI+++II MA  +   ++A+ +  E   + L+   CD IQ   
Sbjct: 494 IIDRSFVKELVDNPDDAAIIKAIISMAHTLGLRVLAEGVETEQQCRFLSHNLCDEIQGFL 553

Query: 940 VASPLGFNSILKLLKE 955
            ++P+  ++ +KLL+ 
Sbjct: 554 FSTPVTADAFVKLLQA 569


>gi|332186757|ref|ZP_08388499.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332013090|gb|EGI55153.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 530

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/455 (24%), Positives = 230/455 (50%), Gaps = 8/455 (1%)

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             R     ++  +   ++ +  D T Q  +   +      D+LTG+PNRQ F D +  ++
Sbjct: 71  YFRATLARSAEDEPDSFVLMLVDHTAQHHTERSLRREMTIDSLTGLPNRQGFGDLIEMMM 130

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                       V+V+D++++ ++N  +G  V D++L+++ RR+   L+  D + R+ GN
Sbjct: 131 AT-----RHPHAVLVVDLNRFGRLNACMGSLVADELLITVARRLKGALRSRDSIGRIGGN 185

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            FG++++ +    +    A  + ++++ P  L + E+ V  SIG A  +     + E+++
Sbjct: 186 EFGVLMMIDGGEDEAHVLAERIERALSAPFRLTDFEVNVEGSIGIAFGSDQDGDAEELIR 245

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +A+ A+   K  G   V   +  +    +  ++  L  A++  EL+L Y PI  L   ++
Sbjct: 246 HAQFAVKQTKSAGRTQVYHPQAFTIARAQFAMETALRHAIDREELHLAYQPICDLTSGKV 305

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPI 794
           V  EAL +W   +  +   S+F+ +AEE  +I  +  + +++    +  W R       I
Sbjct: 306 VAFEALARWRDAEGCDHLPSDFIPVAEESGLIVPLGRWAIDQALTQLTEWDRRAGGTCGI 365

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N+++  L  + + + ++  +++T  S  R+ L  +ES ++G+P+R   ++  L+ +
Sbjct: 366 RMSVNVSAIQLQRDVIPDVIERALARTGLSGDRLTLELTESAIVGDPDRVTGIMEALKAL 425

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G ++ +DDFGT  S ++YL  +P D +K + S ++G      +IAI+R+++ +A+ +   
Sbjct: 426 GTTVAMDDFGTGYSSMAYLQRLPIDVLKIDRSFVSGMLADRDKIAIVRAVLGLAQALGMK 485

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             A+ I      + L  +GC Y Q    A PL  +
Sbjct: 486 TTAEGIETVELGQTLAALGCTYEQGYVYARPLDPD 520


>gi|226357459|ref|YP_002787198.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319449|gb|ACO47444.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 597

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/478 (24%), Positives = 212/478 (44%), Gaps = 21/478 (4%)

Query: 485 VRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           +R  D      +  +  +         G +  +  +  D      +L+ +   A  D LT
Sbjct: 114 LRTPDGHHLGTVCVMDAVPRSFTLEEEGILQDFAALVMDELRLHITLQQLGDLALLDTLT 173

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PNR +F  RLT  +  +  D + +  + ++D+D++K IND LG A GD++L    +R+
Sbjct: 174 SLPNRTNFRQRLTQAMRRATLDSS-KVVLGLMDLDRFKLINDTLGHAAGDELLCLTAKRL 232

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            E L   D +AR+ G+ F +I                +R++ + P  L ++EI V  S+G
Sbjct: 233 SECLASSDTVARMGGDEFALIFSDVAVPAGTERILARIREAFSTPFVLEDQEIYVHWSLG 292

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENS 718
              +         +L  A+ AMY AK  GG H   +          + +   +  A+E +
Sbjct: 293 LTIFPDDADQVETLLTQADTAMYRAKRAGGGHAFFNAEHDRRTLAEMALLSGMHRALERN 352

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  L + PII  +  E+   EALI+W+ P  G +S +EF+ +AE   +I  I  ++L   
Sbjct: 353 EFRLHFQPIIHPISGEVTAHEALIRWESP-GGLVSPAEFIPLAEVSGLIIPIGQWVLREA 411

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R               I +NI+  +    +  E +  ++ +    P R+ L  +E+ ++
Sbjct: 412 VRAAARTLRG------HIAVNISPLEFAQPQFVENVTRVLCEEGLEPGRLMLELTENSLI 465

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE----- 893
            +  R R +L  LR +G+ + LDDFGT  S  S L  +P + +K + S            
Sbjct: 466 -DAHRGRDVLRDLRALGVRVALDDFGTGYSSFSALAGLPVEVLKIDRSFTLHLGTAGPEG 524

Query: 894 -KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +   ++R+I+ +A+      +A+ +   I  + LT +GC ++Q      P    +  
Sbjct: 525 VRAAELVRAIVALARAFGLDTVAEGVETPIQAQLLTDLGCTFLQGYLFGRPSPLPAAA 582


>gi|323497762|ref|ZP_08102777.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317238|gb|EGA70234.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 712

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/482 (24%), Positives = 242/482 (50%), Gaps = 26/482 (5%)

Query: 486 RAADNQFHWM--IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           +  D +F  +   +R R +    G         ND          I   AF D LTG+PN
Sbjct: 233 QTKDGRFSLVVDEVRYRELRQLVGAFNGMQKSVND------HNARIEHMAFHDQLTGLPN 286

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F++ +   ++   +++N    ++ ID+D +K IND  G  VGD+V++ + +RI +++
Sbjct: 287 RFRFIESVDKQMN---SNNNQLIAILFIDLDDFKFINDNFGHHVGDEVIMQVCQRIEQVV 343

Query: 604 KFPDI--------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +         L+R+ G+ F ++++  +  ++++  A A+ K++  PI+  + +++ +
Sbjct: 344 SSQEFANVTAPCVLSRVGGDEF-MLMVPYSAEMRVSAIADAILKAVIQPIDHQQSKLSCS 402

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCL 713
           ASIG A +      +  + ++AELAM+  K +G N    +  S  ++ +  +  + +L  
Sbjct: 403 ASIGIACYPDFGSDAESLCRHAELAMFERKQKGKNAYTIYTHSMDKTIQERLYIERELRR 462

Query: 714 AVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A+++ S+  L Y P   +    I+G EAL++W+HP  G I   +F+ +AE   +I  +  
Sbjct: 463 AMDDLSQFELWYQPKFDVATSRIIGAEALVRWNHPTQGYIRPDKFIPVAESTDLILTLGE 522

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +++  A+    W  Q      +I +N++ + L    L E     + +     + + +  
Sbjct: 523 HLIKLAAKQASIWVKQYGEE-FYIALNLSPRQLYRQNLVEIFATSLEQNQLHANALHVEV 581

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+++M +  + + +L  LRK+GI + LDDFGT  S LSYL    FD VK + S +   +
Sbjct: 582 TETLLMSDSAKIKAVLHNLRKMGIQVWLDDFGTGYSSLSYLQEYQFDGVKIDRSFIYTLS 641

Query: 893 E--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 +++ +I+ +A +++   +A+ I  +  +  L ++GC Y Q   ++ PL     +
Sbjct: 642 SENNNTSLIEAILSIASSMKMMSVAEGIETDYQLARLKQLGCQYGQGYLISRPLPAAEFV 701

Query: 951 KL 952
           ++
Sbjct: 702 EM 703


>gi|253582242|ref|ZP_04859465.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835781|gb|EES64319.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 1029

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/564 (21%), Positives = 243/564 (43%), Gaps = 23/564 (4%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                V+ + D ++  ++   R   TP +  +  L S  +  PI  W   +H +D + F  
Sbjct: 481  YEALVMSTDDFIYICNMKTGRFKYTPAMVEMFNLPSEIIQNPIFIWKNIVHEDDWEKFYQ 540

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                    +      EFR +  D ++ W+  R   M +  G+   + GI   + +Q K  
Sbjct: 541  SNMEIGEGQTDYHLVEFRAKNKDGEYIWLKCRGHLMRDEVGEPSIFAGIMTLLGKQNKI- 599

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                     D LT + N   F       +   + +      +M++ ID +K++N++    
Sbjct: 600  ---------DILTRLLNINEFSKSFEEKIKDYSVE---TIGMMILGIDDFKQVNEMYDRE 647

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            +GD VL   ++ I   L    +  RL G++FGI++ + N+  ++ +    ++  ++    
Sbjct: 648  LGDSVLKMTSQIIQSSLPRNALAYRLDGDQFGILVENTNS-QELQNIYNNIKTKLSRQQL 706

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
            L + +I VT S G + +        E+ K  + ++ +AK  G + +  F       +S  
Sbjct: 707  LEKSKIFVTISAGCSLYPQDGNKYQELYKYTDYSLQYAKKSGKDKIVFFSNDILEHKSRF 766

Query: 705  VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            + I   +  ++EN      + Y P +      + G+EAL++W   K+G+IS  EF+ I E
Sbjct: 767  LEILRHIRESIENGFEGFEVFYQPQVFCSGTNLKGVEALLRWKCKKFGSISPIEFIPILE 826

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            E  +I  +  ++L    +      +      I + +N +   LLD    + ++ +I++  
Sbjct: 827  ESGLIIPVGKWVLREAVKACKEMLE--YNKDITVSVNCSFIQLLDENYLDDVKTIIAEEK 884

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              PS I L  +ES ++ + E    +  ++++IGI   +DDFGT  S L  L  +P + VK
Sbjct: 885  VPPSNIVLELTESCIIKSIETLHEMYSQMKEIGIKTAMDDFGTGYSSLGILKQVPANIVK 944

Query: 883  FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             + + +     +   I  +  I  +  ++   +  + I  + +   ++ +  DYIQ  + 
Sbjct: 945  IDRAFVKDIINSRFDITFIEFITRICHSVGIKVCLEGIETKEEFDLVSNLEIDYIQGYYF 1004

Query: 941  ASPLGFNS-ILKLLKERFPLVKNT 963
              P    S     L E+    +++
Sbjct: 1005 GKPQPKKSIFENYLIEKTEAHRSS 1028



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 7/187 (3%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +  ++G I+ +     DIT+     + ++ +   D      N ++    +   +  + 
Sbjct: 269 SLIKWTDGSIVHFQES-TDITDTVILKKNVIQDILCD---KALNWRAGKVEMAKAIQEAK 324

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +      V  IDID  K IN+  G   GD V++   + I   L   + + RL G+ F +
Sbjct: 325 KNKK-NFVVASIDIDDLKIINERYGHIEGDKVIIETIKIIKNSLAEKEFIFRLEGDNFIV 383

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAE 678
           +  +      I          + +    L++E   +   G    +   +I  ++++  A+
Sbjct: 384 VFENRTEKEAI-KLLYECIDKLKIKKKELKKEFDFSFCFGTVEIYPGEEIFENDIIARAD 442

Query: 679 LAMYHAK 685
             +Y  K
Sbjct: 443 KKLYFQK 449


>gi|21231359|ref|NP_637276.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768588|ref|YP_243350.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113021|gb|AAM41200.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573920|gb|AAY49330.1| GGDEF family protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 696

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 220/443 (49%), Gaps = 7/443 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + ++  A  D LT +PNR    + +   ++    D   R  VM+ID+D +K +ND  
Sbjct: 254 QANQELVLAALHDPLTRLPNRVLLHEHVLQSIERGQRDGQ-RFAVMLIDLDGFKAVNDGY 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+++ +R+G   +    LARL  + F  ++    +    A  A  + +++A+
Sbjct: 313 GHQLGDQLLIAVAQRLGAHRRAHGSLARLGADEFV-LVADIADPEDAAAIAGHLVQALAL 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P  + + E+ +++S+G A +     +  +++ +A+ AM HAK  G N    F  S     
Sbjct: 372 PFLVGDHELRLSSSVGIALYPEDAGSEHQLMTHADAAMGHAKQAGRNRYSFFDRSMTGTT 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ + +DL  A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +A
Sbjct: 432 RERLQLLQDLPRALELGQFALHYQPKYCAEDGRPLGAEALIRWLHPERGMVPPDSFIPLA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   MI  +  ++LE   R + +WRD  +     + +N+++  L    L   + A ++  
Sbjct: 492 ERSGMIGPLGKWVLEEACRQMRAWRDAGHG-DWRVAVNLSATQLASPSLPAEVAATLAAH 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++ L  +E++ M + +     LG+L  +G+ + +DDFGT  S L YL  +P   +
Sbjct: 551 AIAPGQLTLEITETMAMRDADACLRTLGQLTDLGVRIAIDDFGTGYSNLLYLRKLPAHEL 610

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   
Sbjct: 611 KIDRSFVQAMDSGPEDIAIVAAVVALAHTMRLQVVAEGVETPAQRNTLERLGCDQLQGYL 670

Query: 940 VASPLGFNSILKLLKERFPLVKN 962
           +  P+  +  + L+  +    + 
Sbjct: 671 LGRPMEPDRFIALVVAQRDGERR 693


>gi|302869003|ref|YP_003837640.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315504526|ref|YP_004083413.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
 gi|302571862|gb|ADL48064.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315411145|gb|ADU09262.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
          Length = 586

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/433 (27%), Positives = 208/433 (48%), Gaps = 9/433 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S       A  D LTG+PNR  F +RLT  +  +      R  V  +D+D++K +N
Sbjct: 143 ALRDSEARFRHQATHDPLTGLPNRTLFTERLTAAI-TAPGRGADRVGVCFLDLDRFKVVN 201

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +LV++ +R+   L    ++ARL G+ F I++     +      A A   +
Sbjct: 202 DSLGHQIGDSLLVTVAQRLHRALGEH-LVARLGGDEFVILVERTAGTDDAVKVAEAALAA 260

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +   E+TV+ASIG      +  +  ++++ A+  ++ AK  GG     F     
Sbjct: 261 VREPALVDGHELTVSASIGIVERPVAGTSPMDLMRAADSTLHWAKAAGGARWSLFDADRN 320

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R D     +   +  A++  E YL Y P+  L D  ++G+EAL++W HP+ G +    F+
Sbjct: 321 RRDLARYALSAAIPAALDRGEFYLDYQPLTSLRDGRVLGMEALVRWRHPELGVLRPDSFI 380

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  ++L    R+  +W D     P F+ +N+A + L   +L   ++ ++
Sbjct: 381 PLAEETGLIVRLGSWVLAEACREAGTWPDAEGDAP-FVSVNLAVRQLHRTDLVTEVRGVL 439

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P R++L  +ES +M         L  L  +G+ + +DDFGT    L+YL  +P 
Sbjct: 440 GRTGLPPHRLQLEITESTMMSTVVEPVRALRVLGDLGVRVAIDDFGTGYCNLAYLRDLPV 499

Query: 879 DTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           D +K  G  +TG     +     IL S++ +A  ++ T+ A+ +        L  +GCD 
Sbjct: 500 DELKVAGEFVTGLRAPGSGTDERILASLVSLAHALDLTVTAEGVETADQADRLRAIGCDA 559

Query: 935 IQDSHVASPLGFN 947
            Q  H   P    
Sbjct: 560 GQGWHFGRPGPAA 572


>gi|254457661|ref|ZP_05071089.1| hypothetical protein CBGD1_1357 [Campylobacterales bacterium GD 1]
 gi|207086453|gb|EDZ63737.1| hypothetical protein CBGD1_1357 [Campylobacterales bacterium GD 1]
          Length = 973

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 100/440 (22%), Positives = 205/440 (46%), Gaps = 8/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++  +   I   A+ D LTG+PNR+   DRL   + LS         +  +D+D +K IN
Sbjct: 410 QRLLAESKIEFMAYYDVLTGLPNRELLTDRLKQSIALSNRTKQP-VAICYLDLDGFKPIN 468

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L    +R  E L+  D ++R+ G+ F ++L    +  ++ +  + +  +
Sbjct: 469 DKFGHETGDKLLKLFAQRFKEHLREGDTISRIGGDEFILLLSGFESQKQLKEILVRLIDT 528

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
             +P  + +  I ++ SIG   +      +  ++++A+ AMY AK  G ++   +    +
Sbjct: 529 ANIPFEIDQNRIHISCSIGATIYPIDNSDTDTLIRHADQAMYRAKEIGKSNYIIYTPIEN 588

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +   + ED   A+  SE+ L Y P + L D  I+G EAL +W+HP+ G +  + F+
Sbjct: 589 IDSQENEKLLEDFSHALGRSEVVLHYQPKVSLYDSSIIGFEALSRWNHPEKGMLYPASFI 648

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I E      A+  ++++     + +W          I +NI+ + +      + ++  +
Sbjct: 649 HIIENTPQEIALGEWVIKEALAVLNNWHKNGYT--YTISVNISPRHIQLQGFADYLEKAL 706

Query: 819 SKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           S       S+++L   E   + +      ++ + + +G+  +LDDFGT  S L++   +P
Sbjct: 707 SIYSNKFASKLELEILEVAGVTDLTNVVHVMNKCKNLGVKFSLDDFGTGYSSLTHFHRLP 766

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + +         + I+  +I +AK ++  ++A+ +        L  +G DY 
Sbjct: 767 IDILKIDQNFVIDMIENSDDLDIVEGVIQLAKALKRPVVAEGVETLEIALMLLYLGSDYA 826

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q   +A P+  ++I   +  
Sbjct: 827 QGYGIAKPMPLDNIQDWISS 846



 Score = 61.1 bits (147), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 12/162 (7%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
             +     +  T   +  +  +  +    +  + D  W  D     +        + G +
Sbjct: 113 FVYGTFVDITETNNLTTSLHKERNKYIALLESAQDGFWMVDSTETILDVNEAYCLMSGYS 172

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G   +        D +  +  L++ +    G  +        D     + I +  
Sbjct: 173 KDEIIGSKISAFEAT--QDEEYIKKNLENIIKNGGGLFETSH--YKKDGTLIDLEISVSY 228

Query: 502 MSNSNGDILRYIGIANDITEQ---KKSLEGILCNAF--QDNL 538
               NG    +  +  DITE+   KK  +  L  +    DN+
Sbjct: 229 AKIENGV---FFSLLRDITERNLDKKLSDLRLKLSNLVHDNV 267


>gi|297583353|ref|YP_003699133.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297141810|gb|ADH98567.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 712

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/630 (20%), Positives = 258/630 (40%), Gaps = 21/630 (3%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAI-TKRLDNDIIQPALVGGLVLIVILIG--FTVIQH 389
           GY         W  I    +         +  +     A +  L     +I     +   
Sbjct: 78  GYHPKSYFRTMWETIKAGRVWRGEICNQTKHGDHFWSRATIVPLRNEQGVIHKFLALRHD 137

Query: 390 VLATGYFSQGIFSDGER-QSLAVLGSGDIVWDW---DIVRDRVTTTPDIATILGLASGSM 445
           +    +    +    E+     V    + V+     D   D V T  +     G    + 
Sbjct: 138 ITDRVHAEAALQDALEKDFYQVVKNLQNGVFKLKKRDQADDIVFTLSEGQIAAGYQMTTK 197

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +                 +D  +     R +        D  +   + R       
Sbjct: 198 DIEGKRVKDVFPEPQAKKITHHVDRALQQGAERFELTL----NDQVYLIYLTRFETAFAG 253

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
               +   G   DIT+QK   + I   A+ D+LT +PNR+SF   L   L +   +   +
Sbjct: 254 ----VEVAGSIIDITDQKLKEQQIQTMAYYDSLTQLPNRRSFELALKDSLQMPLANGE-K 308

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-SE 624
             V  I++D+++ +N+ LG AVGD +L  +  R+  L     +L+R SG  F +++  + 
Sbjct: 309 VAVFYINLDRFQSVNETLGHAVGDRLLKKVAIRLKTLFDQGAVLSRFSGVDFAVMVRLTC 368

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   I   A  +  ++  P+ L   E+  + +IG +           +++ A+ AM   
Sbjct: 369 EDGDVIKHEAERIHAALREPVILDNMELYTSPAIGVSLAPDHGTDWKTIIQYADAAMNRT 428

Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K   G     F      S    +  +++L +A+E   L L   P ++     + G EAL+
Sbjct: 429 KQLPGQAFYVFDSELEASLLRRLAIEQELRIAIEEGTLDLYVQPKVKAKTYRLSGGEALL 488

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W H + G +S  EF+ IAEE  MI+ +  ++++  AR + SW D      + + +N++ 
Sbjct: 489 RWHHKELGTVSPEEFIPIAEEFGMIQDLGYWVIQEGARRLKSWHDLGLTY-LSLSVNVSI 547

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +  +       MQ ++ +T   P +++L  +E+V   N E +R ++  L+++G  +++DD
Sbjct: 548 RQFMQPTFASDMQGVLDETGVDPRKLELEITENVT-ANMEMTRKVMLALKEMGFIVSIDD 606

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           FGT  S + YL  +PFD VK + + +   ++   +I+++ + +A  +  + +A+ +    
Sbjct: 607 FGTGYSSMQYLQELPFDRVKLDKTFVMDLSKANRSIMQATLKLASALSMSTVAEGVESFA 666

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               L+  GC+ +Q  + +  L      + 
Sbjct: 667 HAAFLSEWGCEELQGFYFSHALSEADFHQY 696



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFVGYR 475
           +V   D              + G +   + G   R      H   +  FRT+ ++    R
Sbjct: 39  VVMITDTNGVITYVNNRACELSGYSRDELTGTTPRILNSGYHP--KSYFRTMWETIKAGR 96

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
               + E   +       W    I P+ N  G I +++ + +DIT++  +       A Q
Sbjct: 97  --VWRGEICNQTKHGDHFWSRATIVPLRNEQGVIHKFLALRHDITDRVHAEA-----ALQ 149

Query: 536 DNL 538
           D L
Sbjct: 150 DAL 152


>gi|297538094|ref|YP_003673863.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera sp. 301]
 gi|297257441|gb|ADI29286.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera sp. 301]
          Length = 899

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/569 (20%), Positives = 222/569 (39%), Gaps = 14/569 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +   +         +  + ER  + + G  D V   +     +        + G+ 
Sbjct: 334 LSHGINGMLDRIEDSQYELQLEKERAQVTLEGIADAVITSNPAGYVLYMNSAAERLTGVN 393

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              M       L  +   D+    T + S         Q E  +  AD +   +     P
Sbjct: 394 LSEMKIKTLRSLFKLLAEDK---TTPVSSEWLTDSYSSQEEVILERADGEEFVIRKSASP 450

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +S+G     + + +D+T  +     +   A  D LTG+ NR  F  +    +D +A  
Sbjct: 451 LYDSDGHTFATVTVLHDVTMLRTLSNQLSFQARHDQLTGLINRYEFDRKTQAAIDDTAIA 510

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           + +   +  ID+D++K +ND  G   GD +L  LT  I   ++  D LARL G+ F ++L
Sbjct: 511 NRVHC-LAYIDLDQFKIVNDTCGHMAGDVLLKQLTNHIKAKVRSSDTLARLGGDEFALLL 569

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELA 680
           +  +           +           ++   + AS+G         +T SE+L   + A
Sbjct: 570 MGCDLVKAQEIIEGLLDVVREYRFTFDDKVFKIGASVGLTEISPLHNLTLSELLSTVDSA 629

Query: 681 MYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            Y AK +GGN +  +R         ++++     + L +E+ +  L    +  L +   +
Sbjct: 630 CYTAKEQGGNRIHIYRSDDSDIKEHNNQLEWVSRIHLGLEHKQFVLYIQRMASLTEGAEL 689

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E LI+             F+  AE   ++  I+ +++      I              
Sbjct: 690 HCELLIRMQAMDGSYYPPGYFLPAAERYHLMPKIDRWVVGEALAIIARKGAAFPYV---C 746

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++ + L ++   E +   I       SRI    +E+ V+ N  ++R  +  LR+IG 
Sbjct: 747 AINLSGQTLSEDGFLEYVIEQIKLHKVDTSRICFEITETSVIANLNKARQFMHALRQIGC 806

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             +LDDFG+  S  +YL  +  D +K +G  +      +   A++ SI  +   +    I
Sbjct: 807 RFSLDDFGSGLSSFAYLKNLEVDFLKIDGMFVKAIVKNKIDRAMVESINNVGHVMGLHTI 866

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           A+    +  I  L  +G DY Q   VA P
Sbjct: 867 AEFAENDEIINMLKEIGVDYAQGYGVAKP 895


>gi|330941327|gb|EGH44185.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 545

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 215/449 (47%), Gaps = 11/449 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGGVALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSE 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLNR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++    P  ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S   +L  +
Sbjct: 394 LIAEHNVDPRWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 454 PIALLKIDMGFVAQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSFGCNQ 513

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +Q   ++ PL    ++  L+ +      +
Sbjct: 514 VQGYLISRPLPVEELVTYLRSQAAHTGTS 542


>gi|238750794|ref|ZP_04612292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia rohdei ATCC 43380]
 gi|238710938|gb|EEQ03158.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia rohdei ATCC 43380]
          Length = 664

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/550 (22%), Positives = 243/550 (44%), Gaps = 12/550 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                G     + G     L         + R  
Sbjct: 113 EQVVSEANSVIVILDKNGHVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASS-RKN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F   R    + E  +     +  ++       S S  +    I    DIT+++++ E
Sbjct: 172 IEGFF-QRGASYEVERWINTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   
Sbjct: 231 RLRVLANTDMITGLPNRHAIHERINSAI---QTRGDTSVGIIYLDLDNFKKVNDHYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   L   ++LARL G+ F +++ +      +   A  +   + +P  +
Sbjct: 288 GDRLLKDVSLAILSCLVDNEMLARLGGDEFIVLVENAT-MQMLETTAQRILNRMKLPFRV 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
              E+    SIG A       T   ++++A+ AMY AK  G      F     +   + V
Sbjct: 347 GLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKENGKQTYSIFSQQMNKKVSEYV 406

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L  A+E  +L + Y P I     ++  +EAL++W  P+ G I+ SEF+  AEE  
Sbjct: 407 WLDTNLRKALEQHQLKVFYQPKISTKTGKVHSVEALVRWQSPERGLIAPSEFISYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ +  ++L+   +  + W+ +     + I +N++++ L+D  +       +  +    
Sbjct: 467 LIRPLGKWVLQTSMQQAVDWKKRGIN--LRIAVNVSARQLIDEAIVTSFIESLEASALEY 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S + +  +ES ++ + + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + 
Sbjct: 525 SLVDVELTESCLIDDEDAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          +++R+II +A+ +   +IA+ +  + + + L  +G D  Q    A P
Sbjct: 585 SFVRHIHNNLISQSLVRAIIVVAEALHMRVIAEGVETKEEEEFLDSIGIDEKQGFLYAKP 644

Query: 944 LGFNSILKLL 953
           +  + +   L
Sbjct: 645 MPASELEHWL 654


>gi|160877050|ref|YP_001556366.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862572|gb|ABX51106.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|315269254|gb|ADT96107.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS678]
          Length = 577

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 207/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +    +    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDY-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+ +  R+ E+L+  DI+ARL G+ F +++   +        A  + K 
Sbjct: 187 DTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANRLLKV 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A++ +E  + Y   +     ++VG+EALI+W HP  G I+  +F+
Sbjct: 307 KEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQA--NMPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ ++  I+ ++LE+       W  Q         I +N+++  + +  L + +  
Sbjct: 367 PIAEEIGLMDDIDDWVLEQACTQAQVWLSQLQPLGQEFTIAVNLSASQIGNENLFDKIVH 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++KT      ++L  +E+ ++ +P     +L R+  +G+   LDDFGT  S L ++   
Sbjct: 427 TLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ +      +  T   C  
Sbjct: 487 PISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCTARHCTV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL   +   
Sbjct: 547 LQGYLFSRPLDAAAFEA 563


>gi|288573148|ref|ZP_06391505.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568889|gb|EFC90446.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 593

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/501 (21%), Positives = 229/501 (45%), Gaps = 33/501 (6%)

Query: 460 DRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           D +  R  +D  +      R   E+R+R        +   +   ++              
Sbjct: 106 DVEMLRHAVDQALAKASLKRENREYRLR--------LEKLVNSQNDE----------LRS 147

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+       +      D LTG+PNR  FLDRL   + ++   +     + + D+D +  
Sbjct: 148 ITDSLCLERQM------DGLTGLPNRVLFLDRLDMAVSMT-RHNGTMLGLFLCDLDDFSY 200

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN  LG +VG++VLV++  R+    K    +AR+  + F ++L    +   +   A  + 
Sbjct: 201 INGSLGHSVGNEVLVAVGNRLKVFEKDGGTVARIGSDEFALVLPGIVDRSAVFKTAEDLS 260

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K ++ P++L  + + ++   G   +        E+L NA +A+  AK  G      F  S
Sbjct: 261 KILSEPLSLGGQRLDLSMGCGVVIFPDDGDDDDELLTNAGVALQAAKISGKGSFRLFSQS 320

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG-NISSS 755
                     +   +  A++  E  + Y P +     +I G+EAL++W   + G  +   
Sbjct: 321 LSQEAQSYFHVGAHIREAIDLDEFKVYYQPTVNARTGDINGMEALLRWRSSRLGRFVMPD 380

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+L +I  +  ++L R     ++W +    P + + +N++++   D  L   ++
Sbjct: 381 EFIPVAEQLGIIIPLGEWVLRRACSQSLNWLELF--PNLRLSVNLSARQFSDPALVSKVE 438

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T +    + +  +E+V++ + +R+  ++  L + GI +++DDFGT  S ++YL  
Sbjct: 439 QILQETGFPCGSLDMELTENVLVKSEDRAVEVMNNLVRRGIGISIDDFGTGYSSMAYLKS 498

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P   +K + S ++G  E    +AI  +++ +A ++   ++A+ +     ++ L  +GCD
Sbjct: 499 FPVRRLKIDRSFISGIPEDKGDLAIAEAVVTLAHSLGKEVVAEGVETAEQMRILGSIGCD 558

Query: 934 YIQDSHVASPLGFNSILKLLK 954
            +Q    + P+  +    LL 
Sbjct: 559 VLQGYLFSPPVPHDRFDTLLS 579


>gi|218708990|ref|YP_002416611.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
 gi|218322009|emb|CAV18043.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
          Length = 827

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 222/447 (49%), Gaps = 6/447 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D  + +++ + +   A  D+LTG+ NR +  +    ++      +  +  V+ ID+D
Sbjct: 376 IKHDFHKLEQNRKELSYLAHHDSLTGLYNRTALKESF-AVIQERNIQNTTKIAVLFIDLD 434

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND  G A GD +L ++ + +  L +  ++  R  G+ F  I+ +   +  +    
Sbjct: 435 DFKNINDAHGHAYGDQLLKNIAQTLQHLTEPNEMYFRFGGDEFIAIIDNLPTAESLTPIL 494

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             ++++I    N+    +++  SIG +           ++  A++A+Y AK      ++ 
Sbjct: 495 NKIKQAIERSYNIKGESLSIKTSIGVSLSPDHADNIEMLISKADMALYFAKRTSKGIIQL 554

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   +S     ++ I+  L  A++N ELY+ Y P I +   E++G+EAL +W + K G I
Sbjct: 555 FNESISDDIHSKLEIENALNSALDNKELYVHYQPQISIHSGEVLGVEALCRWQNKKLGFI 614

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AE+  +I  I  F+ E   RDI +  +Q     + + IN++      N L E
Sbjct: 615 PPDVFISMAEKTNLINDITFFVAETSMRDISTINNQLG-VSLSLSINLSPAVFTHNHLVE 673

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
               L +K   SPS+IK+  +ESV++ + +   L++ R + +G+ +++DDFGT  S LSY
Sbjct: 674 RFSELAAKYALSPSKIKIEITESVLVEDLQAVTLVMNRFQALGMQVSIDDFGTGYSSLSY 733

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +P + +K + S +          A++ +I  +A      ++ + I  +  ++ + ++
Sbjct: 734 IASLPINEIKIDKSFIDTIDTDERQFALVEAITSLASIFNFDLVVEGIETQAQLQSIKQL 793

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
            C  +Q  + + P+    ++K L+ + 
Sbjct: 794 YCSAVQGYYYSRPVSATDLVKYLELQN 820


>gi|322833466|ref|YP_004213493.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
 gi|321168667|gb|ADW74366.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rahnella sp. Y9602]
          Length = 557

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/559 (21%), Positives = 243/559 (43%), Gaps = 17/559 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    +     D  R  V      +   G     + G   ++            R    
Sbjct: 11  VLDALPEATVLKDNERKLVFLNQKASEFYGRPREELIGQDVSFFT--DPEQSARQRERDI 68

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +      +  E  +     +   +++R   ++         +    DI+  + S   I
Sbjct: 69  EVLETGEKTVNEET-LVDPSGKRRNVLVRKSRVTLETRH--FILTSIMDISLLRSSEAQI 125

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR +  + L+ I        +    + +++++ +  IND  G   GD
Sbjct: 126 RYLARHDVLTGLPNRTALSEELSQIAARRMYRPDP-CALFLLNLNDFNYINDTYGYQAGD 184

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L    +R+   +     ++R+ G+ F IIL +   S    + A+ +   +  P  L  
Sbjct: 185 AILCEFGQRLRNEVGNSGTVSRIGGDEFSIILRNNPTSEMANNLALEILVMMRQPFTLTR 244

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
               +T S G   + +  IT+ E+++    A+  AK RG N    +     +    + ++
Sbjct: 245 ANPMITISFGIVMFGAENITAGEIMRRGNTALLEAKQRGKNMFSFYSELLDASSVSKRIM 304

Query: 708 KEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            + L  +  +  +L  VY PI+R  DE++V +EAL +W+H   G +S  +F+ +AEE  +
Sbjct: 305 VKALAESLAKEGDLTCVYQPILRSHDEKVVCVEALARWNHGVLGQVSPVQFIALAEETGL 364

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  +   +L +  RDI ++        + + IN+++  L + +    + A++++  + PS
Sbjct: 365 VIQLGEIVLRQACRDIRNFER------LNLAINVSAVQLGEPDFGPRILAVLAEEDFPPS 418

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L  +E+ VM     S   L +LR++G+ ++LDDFGT  S LS L  I  D+VK + S
Sbjct: 419 RLELELTETSVMNANGISLSHLAKLRQVGVKISLDDFGTGYSSLSLLKDISVDSVKIDRS 478

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +   TE     AI+ ++  +   +   +IA+ +  ++    L   GC ++Q    + P+
Sbjct: 479 FVQYVTEVNDTAAIVSAVSQLGNKMHLNVIAEGVENQLQKTFLVSAGCSHLQGYLFSRPV 538

Query: 945 GFNSILKLLKERFPLVKNT 963
               +  LL     ++ +T
Sbjct: 539 PVEVLSTLLSNEMNMLSST 557


>gi|220936407|ref|YP_002515306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997717|gb|ACL74319.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 732

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/562 (19%), Positives = 204/562 (36%), Gaps = 22/562 (3%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-- 461
            ++    +  +   +   D              + G     + G             R  
Sbjct: 177 LQQMHETLEHTASAILRLDAAGRISYANQAALRLTGHTRPELLGHDFAQALLNAPEGRRP 236

Query: 462 ----DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                 +       +  R+        +   D +   +  ++ P     G     I    
Sbjct: 237 ADGPAPYLKDCREVLRSRQPHHLQGLTLWRKDARPLEINCQLAP-----GAEGGAILTLE 291

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D TE +     +      D LTG+ NR+  L RL   L  +  + +    ++ ID+D++K
Sbjct: 292 DATEYRSLSTQLQYQVTHDALTGLLNRRELLIRLEQALRQA-RNGHNNGAMLYIDLDQFK 350

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G   GD++L  ++  +   ++  D LARL G+ F +IL     S  +       
Sbjct: 351 VINDTSGHTAGDELLRQISSLLTGAIRQGDALARLGGDEFAVILNDCPASEIMDTADQLR 410

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                      ++   VTASIG             ++  A+ A + AK +G N + +F++
Sbjct: 411 EHIADHVFRWEDKSYNVTASIGVVPINRESGNVITVMSAADTACHSAKDKGRNRIHAFKL 470

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLV---YHPIIRLMDEEIVGLEALIQWDHPKWG 750
                 R          +  AV+     L      P+          LE LI+       
Sbjct: 471 DDTSMIRRQGEMRWVARIHQAVQEGRFSLFAQTIQPVEAREKHRGTHLEMLIKMQGEGDE 530

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I    F+  AE   +   I+ ++L+     I       N   +   IN++   + D   
Sbjct: 531 LIPPGVFLPAAERYNLSGTIDRWVLQHTFSWIADAGLDENRLSL-CAINLSGHSVGDPAF 589

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + + + + +     + I    +E+V + N  ++R ++  L  +G    LDDFG+  S  
Sbjct: 590 LDYVVSQLKRHALPATLICFEITETVAIANLNQARTMMETLGGMGCRFALDDFGSGMSSF 649

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL  +P D +K +G  +         +A++RSI  +A  +    IA+ +  +  +  L 
Sbjct: 650 GYLRTLPVDYLKIDGLFVKDIAKDPTDLALVRSINDIAHVMGKRTIAEFVESQEILDRLQ 709

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            MG DY Q + +A P+    + 
Sbjct: 710 EMGVDYAQGNFIAEPVPVAELR 731



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 422 DIVRDRVTTTPDIATIL---GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           D    R+  +P    ++   G A G+       W+ Y+H  DR+  +  L      +   
Sbjct: 46  DARLTRLHISPHFKHLVQGNG-AHGAYLKDHDRWVQYLHPEDRERVQQALAGTREAQS-P 103

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              ++R+  A     W+      + +         G+  D++ + +  + I   A
Sbjct: 104 YCIDYRLSDAKGVTRWVRDMGIYVGDPQQGGTVIQGVMMDVSLEHELRDRIEALA 158


>gi|325925984|ref|ZP_08187350.1| diguanylate cyclase/phosphodiesterase [Xanthomonas perforans
           91-118]
 gi|325543580|gb|EGD14997.1| diguanylate cyclase/phosphodiesterase [Xanthomonas perforans
           91-118]
          Length = 687

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 209/433 (48%), Gaps = 7/433 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G A+GD +LV
Sbjct: 255 LHDPLTRLPNRILLHEHLVQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHALGDRLLV 313

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+ 
Sbjct: 314 VVAERLNAHRRAHGSLARLGADEFV-LVADIADPEDAAALAAHLVQALAVPFLVANHELR 372

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           +++SIG A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L
Sbjct: 373 LSSSIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQEL 432

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  + 
Sbjct: 433 PRALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLG 492

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +  R +  WR   +     + +N+++  L    L + +   +S+   +P ++ L 
Sbjct: 493 SWVLRQACRQMRDWRQAGHG-DWRVAVNLSALQLASPSLLDEVATTLSEYALAPGQLTLE 551

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +   
Sbjct: 552 ITETMAMRDAEACLRTLGQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAM 611

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     
Sbjct: 612 DGSAEDIAIVAAVVALAHTMRLQVVAEGVETLAQRNTLERLGCDQLQGYLLGRPMDAERF 671

Query: 950 LKLLKERFPLVKN 962
           +  +  +    + 
Sbjct: 672 IATVVAQRDGPRR 684


>gi|315644687|ref|ZP_07897818.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus vortex V453]
 gi|315279946|gb|EFU43245.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus vortex V453]
          Length = 673

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/430 (27%), Positives = 218/430 (50%), Gaps = 12/430 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+QD +TG+PNR              +  +  + +V+ +D+D++K IND LG  VGD
Sbjct: 242 EKLAYQDTITGLPNRNEMNRFFE------SNSETEKISVLFLDLDQFKAINDTLGHHVGD 295

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            ++  +  R+ + ++    + R+ G+ F IIL  +++ +     A  + + I     +  
Sbjct: 296 MLVQEVGNRLRQFIQGYQQVFRIGGDEFLIIL-KQSDPMYAQRLAEDILQKIKNVYFIDG 354

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
            E+ VT SIG +  +      S +LKNA+ AMY AK  G N    +          ++ +
Sbjct: 355 NELYVTGSIGISIGSVHSSDRSTLLKNADTAMYKAKGLGKNQQCLYTEEMGVQEVRKMEL 414

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL  A+E  E ++VY P   +    +VG EALI+W+HP+ G IS  EF+ IAEE  +I
Sbjct: 415 EKDLQRALELKEFFIVYQPKWNVKSNRLVGFEALIRWNHPRLGVISPLEFIPIAEETGLI 474

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  + LE   +   +W+++  + P  + +N++ +    + L E ++ ++ K    P  
Sbjct: 475 IPMTRWTLEEACKQCRAWKERGIVQP--VSVNLSIRLFHGDNLLELVRNVLDKAELDPHL 532

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES+V+ +       L  +R +G+ +++DDFGT  S +  L  IP D +K +   
Sbjct: 533 LELEITESMVLHDVNDIIRQLENIRALGVKVSMDDFGTGYSSIGLLDRIPIDALKLDRLF 592

Query: 888 MTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   + AI+ +I+ MA+N+   +IA+ +  +  I  LT +GC  +Q  +   P+  
Sbjct: 593 TNDLDTPSKRAIINAIVLMAENLNLDVIAEGVENKEHIDFLTGLGCHVMQGYYYGKPMDI 652

Query: 947 NSILKLLKER 956
           + I   + E+
Sbjct: 653 DEIDVWMYEQ 662


>gi|330826943|ref|YP_004390246.1| extracellular sensor-containing diguanylate
           cyclase/phosphodiesterase [Alicycliphilus denitrificans
           K601]
 gi|329312315|gb|AEB86730.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Alicycliphilus denitrificans K601]
          Length = 746

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 213/466 (45%), Gaps = 14/466 (3%)

Query: 498 RIRPMSNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
               +  S+ +I         +  + ++S + I   A+ D LT +PNR    +R+   LD
Sbjct: 267 TAIAVQGSD-EISNVFRALRSMQARLRRSEQAIHKLAYYDALTELPNRVLLRERMQQALD 325

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      ++++D+D +K IND LG   GD  L  + RR+ + +    ++ARL G+ 
Sbjct: 326 --GDGSAGHGALLLVDLDHFKVINDTLGHEEGDKHLRQIARRLTDAVAGRGLVARLGGDE 383

Query: 617 FGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           F ++    +           + A  +  +I  PI+L  R +  +AS+G   +     ++ 
Sbjct: 384 FVVLAQHLHAGEARAQAQARELAEQVLAAITSPIHLAGRPMHTSASLGVCMFRPGASSTR 443

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           ++LK+A+ AMY AK  G N    F     S    R  ++  L  A+   +L L Y   + 
Sbjct: 444 DLLKSADTAMYQAKSEGRNGYRFFDPVLQSQLEARAALETALHGAIGAGQLALHYQVQVD 503

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               + VG+EAL++W HP  G +S ++F+ IAE   +I  +  ++L+     + +W  Q 
Sbjct: 504 -ALRQPVGVEALLRWRHPLHGQVSPAQFIPIAEASDLILTLGEWVLQTACAQLQAWAGQP 562

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
           +   + + +N++++        E + A +++T      + L  +ES ++ +   +   + 
Sbjct: 563 HTRALTVSVNVSARQFAQPGFVEQVHAALARTGARADLLVLELTESAMLHDIADTVRKMQ 622

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAK 907
            LR +G+   LDDFGT  S LS L  +P   +K + S +     +     I+++I+ MA+
Sbjct: 623 ALRCLGVRFALDDFGTGYSCLSQLQRLPLHQLKIDRSFIQDMGARASDAVIVQTIVGMAR 682

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +   ++A+ +  E     L ++ C   Q      P    ++   L
Sbjct: 683 TLGLHVVAEGVETEAQRTVLAQLQCPAFQGYLFGVPQPAAALEAWL 728


>gi|126658535|ref|ZP_01729682.1| hypothetical protein CY0110_25476 [Cyanothece sp. CCY0110]
 gi|126620122|gb|EAZ90844.1| hypothetical protein CY0110_25476 [Cyanothece sp. CCY0110]
          Length = 404

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/403 (28%), Positives = 209/403 (51%), Gaps = 6/403 (1%)

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S         V+ ID+D +K +ND LG + GD++L  + + +   L+  D +AR  G+ F
Sbjct: 2   SQRYSRYSYAVLFIDLDHFKVVNDSLGHSAGDELLKQVAQTLQNHLRASDTVARFGGDEF 61

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L    +  ++      ++++++ P  L   EI    SIG A   S+     E+L++A
Sbjct: 62  AILLEEVEDIHEVIQVTQRIQEALSAPFELNNYEIRPGGSIGIALSDSNYKHPEEILRDA 121

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDE-- 733
           + AMY AK  G N    F  +   S  +R+ ++ DL   ++++EL L Y PI  L  +  
Sbjct: 122 DAAMYRAKAGGKNRYVVFDPTMQASVLERLALETDLRRGLDSNELCLHYQPIFSLAGDQL 181

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMP 792
           ++   EAL +W HP+ G IS ++F+ +AEE  +I  + LF+L+     +  W+ +  +  
Sbjct: 182 QVSSFEALARWQHPEHGWISPAKFIPLAEETGLISPLGLFVLQEACDQLRVWQSEFAHNL 241

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N+++  L   +L + ++ ++  T   P  +KL  +ES ++     S  LL  L+
Sbjct: 242 SLSINVNLSAIQLKQVDLVKQIKTVLKNTNIDPRYLKLEITESCLLQKNGSSVELLHNLK 301

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIET 911
            +GI L +DDFG   S LS L   P DT+K + S +  + E +    ++ +I +A ++  
Sbjct: 302 ALGIQLCVDDFGVGYSSLSRLHEFPIDTLKIDRSFLRRTEEAKNWETVKLVIALAHSLGM 361

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           T++A+ I  E  +++L  +GC+Y Q    + P+   +  +  +
Sbjct: 362 TVVAEGIETEKQLEQLKVLGCEYGQGYLFSPPVDNQATKQFFE 404


>gi|187920430|ref|YP_001889462.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia phytofirmans PsJN]
 gi|187718868|gb|ACD20091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 562

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 131/563 (23%), Positives = 240/563 (42%), Gaps = 28/563 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHINDRDNFRTI 467
            +    D V   D            A +L      + G      +   I  +    +R  
Sbjct: 6   VLDHITDGVMSLDREWKFRNINRTAARLLKRRPADLLGQEIWAEYPDLIGSSYETAYRQA 65

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            ++ +                     W  +R  P  +        I +  D+TE +   E
Sbjct: 66  AETGLPSSATAFYAPL--------DTWFEVRAFPCED------GLIVLVRDVTEARAISE 111

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG     +  + L  +  L          ++ ID+D++K IND  G A 
Sbjct: 112 LLSRQATHDELTG---LINRRELLLRLNRLIDEGAADSVDLLFIDLDRFKDINDSFGHAA 168

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+VL  +  R+ +LL      +R+ G+ F I L+       +   A  +   +  P+  
Sbjct: 169 GDEVLRVVGERLSDLLTERIHASRIGGDEFVIFLVDAPEGEAV-RVAREVIVRMREPVQT 227

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
                 V ASIG A +  S   + E+L+NA+ AMYHAK  GG+ V SF     +    R+
Sbjct: 228 PSVRAPVGASIGVARYPVSASDAGELLRNADTAMYHAKRAGGSQVWSFGKEDAQRLAHRL 287

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A  + +  L Y P + L    + G EAL++W+HPK G ++  +F+ +  E  
Sbjct: 288 RLRADLESASASHQFELHYQPQLDLGTGRVYGAEALLRWNHPKLGLLTPGDFLDVLLESP 347

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
             +A   +++ R  R    W+   +  P  I +N+++  + + +L   +      +  S 
Sbjct: 348 AYEATGEWLIRRAFRQAAQWQA-PDHAPFKIAVNLSATTIQNCDLAALVSEAAEASGVSA 406

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S +++  +E+VVM +   +   L  +R++G++++LDDFGT  S L+YL  +P D +K + 
Sbjct: 407 SVLEIEVTETVVMSDFVAASRSLSAVRRLGVTVSLDDFGTGYSSLAYLTQLPVDRIKIDK 466

Query: 886 SLMTGST-----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           S +   T      +  A++ +++ +A  +    +A+ +  E  +  +  +GCD  Q   +
Sbjct: 467 SFVQRLTVEETCHQARAMVEAMVTLAHALGMGTVAEGVETETQLALVRELGCDAAQGYFI 526

Query: 941 ASPLGFNSILKLLKERFPLVKNT 963
             P+    +   L  RF   +  
Sbjct: 527 GQPMPAARMEPYLDARFGPARTA 549


>gi|304410861|ref|ZP_07392478.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|307304968|ref|ZP_07584718.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|304350758|gb|EFM15159.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|306912370|gb|EFN42794.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 577

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 208/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +    +    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDY-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+ +  R+ E+L+  DI+ARL G+ F +++   +        A  + K 
Sbjct: 187 DTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVANRLLKV 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEDEFCLGDNDVLIGASIGVAFYNEAASNSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A++ +E  + Y   +     ++VG+EALI+W HP  G I+  +F+
Sbjct: 307 KEVRYRNHIESSLRMALKRNEFKVHYQAQVNAKTHQLVGMEALIRWQHPVDGIIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISW--RDQANMPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ ++  I+ ++LE+       W  + Q       I +N+++  + +  L + +  
Sbjct: 367 PIAEEIGLMDDIDDWVLEQACTQAQVWLTQLQPLGQEFTIAVNLSASQIGNENLFDKIVH 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++KT      ++L  +E+ ++ +P     +L R+  +G+   LDDFGT  S L ++   
Sbjct: 427 TLTKTGLPAGALELEITENCLIEDPHEHAKVLDRIAGLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ +      +  T   C  
Sbjct: 487 PISVLKIDKSFVASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETFEQAEFCTARHCTV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL   +   
Sbjct: 547 LQGYLFSRPLDAAAFEA 563


>gi|262280968|ref|ZP_06058751.1| ggdef domain/eal domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257868|gb|EEY76603.1| ggdef domain/eal domain-containing protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 684

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 211/436 (48%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    N+ +    A  + + 
Sbjct: 305 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTNADESVVLAEKVLQL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQESYQISGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + E+ G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFILYYQPKFN-TNLEVCGVEALIRWNHPALGILTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+    I  W      P   + +N+++    + +L   ++AL
Sbjct: 483 IEGAEKTGLIIPMGYWALEQACLQIQEWERSN-TPFYPVAVNLSALQFENKKLFSTLEAL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIVEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +           IL SII +AK +  T+ A+ +  +  ++ LTR+GC   
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHLAKKLGLTVTAEGVETQQQVEILTRLGCQQF 661

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+  + +++
Sbjct: 662 QGYLLGMPVQVDQLIE 677


>gi|332558780|ref|ZP_08413102.1| Diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           WS8N]
 gi|332276492|gb|EGJ21807.1| Diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           WS8N]
          Length = 758

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 143/633 (22%), Positives = 270/633 (42%), Gaps = 28/633 (4%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + A  ++    +   + +  R  +  ++P  +  L  +   +     +            
Sbjct: 104 LVAVPMLRHGVLAGRVLLGWRTASSDLRPEDLAALQSLAEAMHAAAERRESERLTTEAAA 163

Query: 401 FSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PYI 456
               +R  L   +  S   +  +D     V    + A +LG  +  + G     +    +
Sbjct: 164 ALQEDRLLLESILRTSTSAILAFDADARIVFANDEAAALLGADASRLPGCTLEGVGCRLL 223

Query: 457 HINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                      L     +   +   +    + AAD +   + I   P++      +R + 
Sbjct: 224 SREGEPLPPEALPVARAIAEGQTLRELHHVLMAADGRQRILSINAAPVAAGAATAVRVVA 283

Query: 515 IANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +D+T         + +L      AF D LTG+ NR+  ++ L   L   A  +    +
Sbjct: 284 TIDDVTGQVSADSALRTALAEAHQLAFFDPLTGLYNRRGIVEVLRDCLQTCAR-EKAFLS 342

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D  +++N   G  +GD VL +L  R+  L +    L R+S + F  +   E + 
Sbjct: 343 LLYIDLDGMRQVNGTRGHWLGDRVLQALGARLDNLRQDGGDLGRISADEFV-LTCGETHP 401

Query: 628 LKIADFA------IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 A        + +S+  P  +    + VTASIG A+ ++ + +   +LK  +LA+
Sbjct: 402 DAAGAVAAAEAEAQRILESLREPFVVDGLTLEVTASIGLAAISA-EDSVEGLLKGVDLAV 460

Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVG 737
             AK  GG+   ++R    +    RV + ++L  A+   E  + + P++   +   EIVG
Sbjct: 461 MAAKAAGGDRACAYRADMEQDMVGRVALAQELREAIRRDEFRIYFEPMVSLGVTGLEIVG 520

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W+HP+ G ++   F+  AEE   I+ I+ ++L   A+++  W +      + + 
Sbjct: 521 QEALIRWEHPQRGLLAPIAFIPFAEETGFIRDIDRWVLRAAAQELARWAEDPARRHLGVS 580

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+S   L  E  + ++ ++ +T   P+RI+L  +E  ++ N   +R  +  LR +GIS
Sbjct: 581 INISSAQFLSEEFGQMVREVLDETGVDPTRIELEVTEGTLLSNLGLARTTMMDLRSLGIS 640

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL  +P D +K + S + G ++      IL  II +A  +   ++A
Sbjct: 641 IALDDFGTGFSSLSYLRDLPVDVLKIDRSFLGGLSDSQANRTILEGIIGLASGLGVALVA 700

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + +        L   GC   Q      P     
Sbjct: 701 EGVETPAQFAWLRAKGCRTFQGYLFGRPADEAQ 733


>gi|261404238|ref|YP_003240479.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. Y412MC10]
 gi|261280701|gb|ACX62672.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. Y412MC10]
          Length = 672

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/430 (26%), Positives = 217/430 (50%), Gaps = 12/430 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+QD +TG+PNR        T        +  + T++ +D+D++K IND LG  VGD
Sbjct: 241 EKLAYQDTITGLPNRNEMNRFFRT------NAETDKITILFLDLDQFKAINDTLGHNVGD 294

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            ++  + +R+ + ++    + R+ G+ F +IL  +++       A  + + I    ++  
Sbjct: 295 LLVHEVGKRLRQFIRSGQQVFRIGGDEFLVIL-KQSDPNYAQRLADDILQQIKKVYHIDG 353

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
            E+ VT SIG +  +      + +LKNA+ AMY AK  G N    +          ++ +
Sbjct: 354 NELYVTVSIGISIGSVHSSDRTTLLKNADTAMYKAKGLGKNQQCLYDEEMGLQEVRKMEL 413

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL  A+E  E ++VY P   +  + +VG EAL++W HP+ G IS  EF+ IAEE  +I
Sbjct: 414 EKDLQRALEMKEFFIVYQPKWNVQSDRLVGFEALLRWKHPRLGVISPQEFIPIAEETGLI 473

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  + LE   +    W+D   + P  + +N++ +    + L E +Q ++ K    P  
Sbjct: 474 IPMTRWTLEEACKQCRVWQDSGVVQP--VSVNLSVRLFHGDNLLELIQNVLRKADLEPRL 531

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES+V+ +       LG +R +G+ +++DDFGT  S +  L  IP D +K +   
Sbjct: 532 LELEITESMVLHDVNDIIRQLGSIRSLGVKVSMDDFGTGYSSIGLLDRIPIDALKLDRQF 591

Query: 888 MTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   + AI+ +++ MA+ +   +IA+ +  +  I  LT +GC  +Q  +   P+  
Sbjct: 592 TNDLDTPSKRAIVNAVVLMAEKLNLDVIAEGVENKEHIDFLTGLGCHVMQGYYYGKPMDI 651

Query: 947 NSILKLLKER 956
           + I   + ++
Sbjct: 652 HEIEVWMYDQ 661


>gi|297539644|ref|YP_003675413.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297258991|gb|ADI30836.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 636

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 206/440 (46%), Gaps = 12/440 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A+ D LT +PNR+   DRL       A +  +   V+ +D++ +K +ND  G 
Sbjct: 194 NKKVHQLAYYDFLTSLPNRRLLTDRLNQAFVRCARN-RMYGAVLSLDLNNFKGLNDSKGH 252

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKS 640
             GD++L  + RR+   L+  D +AR  G+ F  +L       E  +      A  + ++
Sbjct: 253 LAGDELLQQVARRLQNALRKNDTIARAGGDEFIAVLDDLGEGKEQATHAAQVAAEKLMQA 312

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--- 697
            A P  L   +     SIG   +  ++   +E+L+ A++AMY AK     +         
Sbjct: 313 FAQPFQLPNFKYRTQPSIGICLFYGNESNETEVLRCADIAMYQAKKSEKLNSVQLYDKAL 372

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  ++ DL  A++ ++  L Y   +    +  +G E L++W HP  G +  SEF
Sbjct: 373 HPAIELRAALENDLAFALQANQFLLYYQLQVDQA-QRPIGAEVLLRWQHPTLGFVPPSEF 431

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  +I +I  ++L++    + +W    +  P+ + +N+++      +  E +  +
Sbjct: 432 IPIAEESGLIVSIGGWVLKQACLQLKAWEHSPDTNPLTLSVNVSALQFSQPDFVETVTNI 491

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + ++  +PS ++L  +ES+++ N +     +  L+ +GI+ +LDDFG   S LS L  +P
Sbjct: 492 LQESGCNPSYLRLELTESLIVKNIDDVIDKIKVLKTLGITFSLDDFGIGQSSLSVLKRLP 551

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I+++II M  N+   +IA+ +  +     L ++GC+  
Sbjct: 552 LDELKIDKSFIDDILHNNCDKFIVQTIINMGNNLGHHVIAEGVELKQQKSLLQKLGCNAY 611

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q      PL        L+ 
Sbjct: 612 QGYLFCKPLPLQEFSAKLQN 631


>gi|149908295|ref|ZP_01896959.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
 gi|149808837|gb|EDM68770.1| PAS sensor diguanylate cyclase and phophodiesterase [Moritella sp.
           PE36]
          Length = 893

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 229/563 (40%), Gaps = 15/563 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            Q   ++ ++ S+ V  S + +   DI        P    I G  +  + G     +   
Sbjct: 323 KQRSTANLKKLSMVVEYSPESILITDISGIIEYVNPKFTAITGFTAAEVLGEKANVFRSS 382

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +    ++ +  + +  +    + E +    + +  W  + I P++N +G I  +IGI
Sbjct: 383 DTPDSV--YKNMWATILAGQ--EWRGELKNCKKNGELFWAKVCIVPVTN-DGVITHFIGI 437

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+TE + + + I   A  D LTG+ NR  F + L   +  +  D+     +  +D+D+
Sbjct: 438 QVDVTEARIASQKISYQATHDMLTGLINRYEFENLLAQSIMSAQQDNTTHV-LCFLDLDQ 496

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G   GD++L  L   + E +K  DILARL G+ F I++     +        
Sbjct: 497 FKIINDTCGHMAGDELLRQLGLLLAENIKPQDILARLGGDEFAILMTQCGLTQAEKAAQN 556

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +           +   ++ ASIG A   S    ++E+L   + A Y AK  G N +  +
Sbjct: 557 ILELIADFQFMWEKNIFSIGASIGLAEINSQTKNTTEILIGVDSACYAAKDLGRNRIHIY 616

Query: 696 RVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEALIQWDHPKWG 750
                    R        +L  A+  +   L   PI+ L D       E L++       
Sbjct: 617 HAEDELLAKRDGEFRWVNELKYALNENRFELYAQPIVSLSDPSQKRIYEVLLRLRTRSGD 676

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+  AE   +  AI+ ++++     +     Q       + IN++   L  N L
Sbjct: 677 IVPPGAFLPAAERYNLSNAIDRWVVDHTFAWMEQHFQQLADVD-HLAINLSGASLGSNTL 735

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   I+     PS IK   +E+  + N   + L +  L + G    LDDFG+  S  
Sbjct: 736 LNHIMQQITLHNLPPSMIKFEITETAAISNLRDATLFIKTLSEFGCQFALDDFGSGLSSF 795

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL  +P  T+K +G  +          A+++SI  +   +    IA+ +  +   + L 
Sbjct: 796 AYLKNLPVCTLKIDGMFVKDILDDPIDEAMVKSINDIGHVMGMKTIAEFVENDAIRQRLQ 855

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            MG D+ Q   +  P   N IL+
Sbjct: 856 HMGVDFAQGYGIGKPAPINDILQ 878



 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 73/210 (34%), Gaps = 9/210 (4%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           I+  +K  + +V ++ A + I      L   +   L    +   L    + +V+ +    
Sbjct: 133 IFIPIKADDGSVYIVAADLSIGHIDTLLNETLYYTLIVSALFL-LFACPLFVVLCLEPRR 191

Query: 387 IQHVLATGYFSQ--GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
              +L      Q   +     + +     S   ++ +D              IL     +
Sbjct: 192 QVRILVKKVTKQTSELVESEAKLTSIFEYSPVGIFHYDNNGIIQKINKCFEGILDSDRDT 251

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G   N L  +   D      ++   +  +    +  +   +   +F  +     P+ +
Sbjct: 252 LIG--FNMLDRL--ED-TVLLNMVKQSLQGKVSVYEGPYTSVSGQ-RFMHLQANFVPLYS 305

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534
           S+G+I   IG+ ND TE+++S   +   + 
Sbjct: 306 SSGEIEGGIGVYNDTTEKQRSTANLKKLSM 335


>gi|326404458|ref|YP_004284540.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301]
 gi|325051320|dbj|BAJ81658.1| hypothetical protein ACMV_23110 [Acidiphilium multivorum AIU301]
          Length = 719

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 219/440 (49%), Gaps = 8/440 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +++ E+++    +   A  D LTG+ NR +F  RL    + S      R  ++ ID+D +
Sbjct: 264 HEVAERERYAAALSRLASTDPLTGLYNRPTFTARLAGRAEGSVGAPG-RVALLFIDLDSF 322

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND+ G  +GD VL     R+  ++     +AR  G+ F + L        +   A  
Sbjct: 323 KQINDLRGHEMGDQVLRQTAERVARVIGATGDVARWGGDEFLVALPDCGGEEALRH-AER 381

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + ++I  PI +      V AS+G A +  +  T+  +++ A++AMY AK  G +  + F 
Sbjct: 382 LIEAIKTPITVGADVCRVEASVGVALYPDNGDTADSVIRAADVAMYAAKREGKSRAKRFD 441

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +   +DR  +++ L  A++  +  LV+ PII          EAL++W+HP  G +S 
Sbjct: 442 PVLADDMADRYDLEQGLRDAIKGDQFRLVFQPIIDARTGACTAFEALLRWNHPVRGAVSP 501

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ +AE+   I+ I  ++LE   R    W      P I + +NI+   +L   L + +
Sbjct: 502 ATFIPVAEQSGQIERIGRWVLEEACRAATGW----PDPSIAVTVNISVSHVLVGSLLDDV 557

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  ++ +   PSR+K+  +E++ + + +RS  L  RLR++G+ + LDDFGT  S LS+LG
Sbjct: 558 EHALAVSGLPPSRLKIEITETMFLHDADRSAPLFDRLRQMGVGILLDDFGTGFSSLSFLG 617

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            +P D +K + S +  +     A + +I+ +A+ +   + A+ +      + L   G   
Sbjct: 618 NLPIDVIKIDQSFVRDAGRNGYATIEAILSIARALGLQVTAEGVETPEQNRNLVERGVGS 677

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q    + P+    +   L+
Sbjct: 678 VQGYLFSRPIPAAGVTDWLR 697


>gi|218663332|ref|ZP_03519262.1| putative kinase/esterase protein [Rhizobium etli IE4771]
          Length = 588

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 130/584 (22%), Positives = 259/584 (44%), Gaps = 30/584 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           + I         +  + +   +  LA+  SG  +W  +I +++      + +I G+    
Sbjct: 9   SEIALSNKLSRTNVELENLLRQLGLALEASGVGIWQHNIAKNQTRWDEQLKSIYGVPKAP 68

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +      WL  IH +D      I    +  R      EFR+   D    ++  R R   +
Sbjct: 69  LD---VIWLDSIHPDDLVATNEIFLRAIETRSD-YASEFRIIRPDGATRYLRSRARYFID 124

Query: 505 SNGDILRYIGIANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + GD   ++G   D+T       E ++S       A  D+LTG+ NR+SF       L  
Sbjct: 125 AAGDPC-FVGAEWDVTDDVLLNKELERSRAEARFAADHDHLTGLLNRRSF----DCALSE 179

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A  ++++  ++ ID+D +K+IND  G AVGD VL  +++ + E +   D+ ARL G+ F
Sbjct: 180 LARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLSHVSKILLEAISAGDVAARLGGDEF 239

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +++  E+   K       +++ +  P+ + ++ + V  SIG AS        + +L  +
Sbjct: 240 AVVIT-EDECDKTIAVLDQIQRRLESPLPVGDQTLIVPCSIGVASAM--SADFARLLSQS 296

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LA+YHAK  G N  E F      +  +   + +DL   +   ++   Y   +      +
Sbjct: 297 DLALYHAKRNGRNRAEIFSDEMASTLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRV 356

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W HP  G ++ + F+ IA    ++  ++  +L+ +  D+ S    + +  I 
Sbjct: 357 NGVEALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVLSDMKS--SASPLEVIR 414

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKI 854
           + +N+++  L D EL       +      P R+     E++ + +  ++ R  +  ++  
Sbjct: 415 VSVNLSADRLDDPELTAK----LDGYDIPPGRLSFELIETIFLDSLSDQVRQNIQAIKSF 470

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           GI + +DD G+  + L  L  +  D VK +  L+T   +      ++ S++ +A+ ++  
Sbjct: 471 GIDIEIDDLGSGHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDME 530

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +IA+ +        L  +G   +Q      P  F  +   L++ 
Sbjct: 531 VIAEGVETLEHANVLAALGVHTLQGYAFGRPQSFADLSARLEQE 574


>gi|94498629|ref|ZP_01305182.1| hypothetical protein SKA58_11253 [Sphingomonas sp. SKA58]
 gi|94421924|gb|EAT06972.1| hypothetical protein SKA58_11253 [Sphingomonas sp. SKA58]
          Length = 653

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/435 (28%), Positives = 218/435 (50%), Gaps = 11/435 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E     A  D+LTG+ NR +   RL  I   +   ++    ++ +D+D++K+IND LG
Sbjct: 206 LAEKFERLARFDSLTGLENRMAMQMRLRDIFQTNEKRNDA-VAILWMDLDRFKEINDSLG 264

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L ++  R+ E+++    +AR  G+ F  ++ S+ + +  A  A  +    A  
Sbjct: 265 HMVGDQLLRAVAERLTEVVQGRGKIARFGGDEFV-LICSDTDRVTAAGIAQEIVSYFAHG 323

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             + E  + VTAS+G+A          E++++A+LA+Y AK +G N   SF  S      
Sbjct: 324 FEIGENHLQVTASVGYAVGPQDGRDMDELMQHADLALYEAKGQGRNRSASFNWSLKERFN 383

Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I+  L  A+   EL L++ PI+ L    I   EAL++W+HP  G I  SEF+ IAE
Sbjct: 384 RLHEIETGLRRALSGGELNLMFQPIVDLNSGHIEACEALLRWEHPVLGPIPPSEFIPIAE 443

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            + +I+A+  ++L R       W +      + + INI+   L   EL   + A + +T 
Sbjct: 444 NMGLIEAMTGWVLRRACEVAAQWPEH-----VRVAINISPASLKSPELPGNVIAALLETG 498

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S  R++L  +ES+ + +  ++  +L  L++IG+ L LDDFGT  S L+YL    FDT+K
Sbjct: 499 VSARRLELEVTESIFLDDSGQTNAILRELQRIGLRLALDDFGTGYSSLAYLRSYRFDTLK 558

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S M G +      AI+++I  +A+++    +A+ I     +      G   +Q    
Sbjct: 559 VDQSFMAGVSANAEDRAIVKAIGSLARDLSMDTVAEGIETVDQLGHAREAGFTNVQGYLF 618

Query: 941 ASPLGFNSILKLLKE 955
           + P+    I  ++  
Sbjct: 619 SRPVPAGQIADMIAA 633


>gi|297191908|ref|ZP_06909306.1| phosphodiesterase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721113|gb|EDY65021.1| phosphodiesterase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 743

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 214/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  + L+ +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 290 LRDPLTGLPNRQWLLERTWSALEDA-ESSGARAALVLIDLDRFRSVNDTLGHLAGDRLLL 348

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L + +++      A  +   ++ P++L    + 
Sbjct: 349 QIADRLRLALPRGAEAARLGGDEFAVLLPTADSTTSAQRIARHLVAELSSPLDLDGLTLV 408

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 409 LEASAGLAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 468

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  ++ L Y P +R  D  + GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 469 RALDAGDVELHYQPKVRF-DGHVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 527

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 528 YVLETALAQVARWRAQGLEVP--VAVNVSPRDVHTPGFAGAVAARLARHGVPAGALQLEI 585

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 586 TEHVLLEDPQRAADTLAGLADHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 645

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  + CD +Q   VA+ +      
Sbjct: 646 VDAEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPQEAT 705

Query: 951 KLLKER 956
             L  R
Sbjct: 706 AWLLAR 711


>gi|332308331|ref|YP_004436182.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175660|gb|AEE24914.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 681

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 213/435 (48%), Gaps = 7/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+  + +   A  D LTG+PNRQ F++ L   L  +  D      +M  D+D +K IN
Sbjct: 249 QLKEQQKAMERLANFDGLTGLPNRQFFMETLRIELAKAKRDKR-NLALMYFDLDGFKGIN 307

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ + +R    L+  D+++RL G+ F I+L ++ + + + + +  +   
Sbjct: 308 DSFGHEIGDLLLLEVCQRTKNFLREGDLISRLGGDEFLILLHNDPDDIMLFEISERIVNG 367

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +   E+ +  SIG A  + S    SE + NA++AMY +K  G +    F     
Sbjct: 368 LSKPFEIQSWEMQIGVSIGIARASDSHFNVSEFISNADIAMYRSKMAGRSTHTVFVPDMM 427

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++  +     +   ++N E  + Y   +   +E +VG EALI+W   + G +S +EF+
Sbjct: 428 EDNKRRLLVANSISNGIKNDEFTVHYQAKVSP-NETVVGYEALIRWHSEQLGFVSPAEFI 486

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+   I +I  +++++I  ++       +   + + IN+++ D+ +  L + ++A+ 
Sbjct: 487 PIAEQSGKILSITKWVIQQICEELNQLLA-LHEEHVVLSINLSAHDINNASLVDYIRAMF 545

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K     S I+   +ES  + N + +   L ++R +G S+ LDDFG   S L YL  I  
Sbjct: 546 EKYSVDTSFIEFEVTESAYLENFDVANQFLKQIRDMGCSIALDDFGAGYSSLGYLTQIHL 605

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K +   +      + +  + ++II MAK +   I A+ +        L   GC  +Q
Sbjct: 606 NTLKIDKQFVDNLNVSKRSTLVTKTIIEMAKQLNLHICAEGVETREQADFLIANGCHQLQ 665

Query: 937 DSHVASPLGFNSILK 951
               + P     IL 
Sbjct: 666 GYLFSKPKSLKDILA 680


>gi|167723092|ref|ZP_02406328.1| hypothetical protein BpseD_28998 [Burkholderia pseudomallei DM98]
          Length = 688

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/424 (24%), Positives = 197/424 (46%), Gaps = 7/424 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR +  +        +A     +  ++ +D+D +K IND LG   GD+VL +
Sbjct: 259 FDTLTDLPNRHTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKT 317

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +        + + V
Sbjct: 318 FSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWNDGQALQV 377

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           T SIG A +     T+  +L++A+ AMY AK  G      F   +    +  + ++  L 
Sbjct: 378 TPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAAARALKLQHALH 437

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +AE    I  I  
Sbjct: 438 EALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVAERSGQIIEIGY 497

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++    R +  WR   +     I IN++ + L   +L   +  ++      P ++    
Sbjct: 498 WVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEI 556

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +K +        
Sbjct: 557 TESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALD 616

Query: 893 EKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ   +  P+     
Sbjct: 617 EQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEF 676

Query: 950 LKLL 953
             ++
Sbjct: 677 EAMV 680


>gi|332533290|ref|ZP_08409156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037172|gb|EGI73628.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 673

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 221/436 (50%), Gaps = 10/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   A+QD LT +PNR+ F ++L +++ +      ++  ++ ID+D +K++N
Sbjct: 233 ELENANIQLQQYAYQDGLTDLPNRRYFYEKLQSLVSI----KGMKFALIFIDLDGFKEVN 288

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L  +  R+   +   D +ARL G+ F +IL   N+  + +  A A++ S
Sbjct: 289 DSLGHDYGDLLLHQVATRLQSCITTKDTVARLGGDEFTLILEGVNSPDEASKIAEAVKSS 348

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +   I + +  + VTASIG   + +  +T  E+++ A+ AMY +K++G N  E F     
Sbjct: 349 LMQSIKIKKETVYVTASIGLTFFPADGLTVEELVRRADQAMYLSKNKGRNRYEFFSYAIE 408

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +++  + E++  A+  ++  L Y PI  +  + +   EALI+W+HP+ G I  +EF+
Sbjct: 409 EKATEKRRLIEEIRTAIVKNQFELFYQPIFSIDGKSVPKAEALIRWNHPERGLIGPNEFI 468

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQAL 817
            +AE+  +I  I  ++  +  +D + +    +   I + +N +  ++       +     
Sbjct: 469 PVAEKNGLINDIGQWVKSQAIQDTVQFN-VLSEKTIQVSVNTSPLEIDRAGCWVDEWIVA 527

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K     + I +  +E+ +M      +  L RL  I I + +DDFG   S L+YL  + 
Sbjct: 528 SKKYQLPANTILIEVTENTLMDPDSSIQRQLKRLSTINIDIAIDDFGVGYSSLAYLQRLD 587

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      +  IA++++II MA N++  ++A+ +  +     L ++ CDYI
Sbjct: 588 IDILKIDRSFINDIESNDNSIALVKAIITMAHNLDVMVVAEGVETQKQYDLLKQLACDYI 647

Query: 936 QDSHVASPLGFNSILK 951
           Q    +  +     ++
Sbjct: 648 QGYIFSKAITKQEFME 663


>gi|242278402|ref|YP_002990531.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio salexigens DSM
           2638]
 gi|242121296|gb|ACS78992.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio salexigens DSM
           2638]
          Length = 557

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/432 (25%), Positives = 208/432 (48%), Gaps = 9/432 (2%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D +T +PNR+   ++L   L  S  + +L+ +V  +D+  +KK+ND  G  +GD +
Sbjct: 120 QAYHDYMTKLPNRRMLTNQLNAYLVQS-RNSDLQFSVFFLDLLNFKKVNDSFGHHIGDQI 178

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+    R+ E +    ++ RL G+ F I+  + + +  I      +R+ I  P  +    
Sbjct: 179 LIQFAERLIEAVGPEALVCRLGGDDFIILEKNVSANKSILKL-RKLREKILHPFEIDGLH 237

Query: 652 ITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708
            ++  S G  ++    K+T+ ++L  A +AM  +K RG N V  F  +      D +  +
Sbjct: 238 FSLDISFGIYAYNIQDKVTADDILNRANIAMRRSKQRGNNVVSIFTKTMLNQTHDILKFE 297

Query: 709 EDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
                A++  +  LV+ P  R+ +  E+ G EAL++W HP  G +S +EF+ +AEE  +I
Sbjct: 298 NSFRTALQEDQFKLVFQPQFRIQNGIELSGFEALVRWHHPDRGMVSPAEFIPLAEETGLI 357

Query: 768 KAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
             ++  ++ +                 + I IN+++K + ++ +   ++  I K      
Sbjct: 358 VELDRLVMRKACSMWSDCLKVSGACENLHISINLSAKHITESSMMRYIEETIDKYNIPLQ 417

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +ES  + +PE +   L  L K+G+   +DDFGT  S L+YL   P  +VK + S
Sbjct: 418 SLYLELTESAFVNDPELAAARLKTLNKLGVHCAIDDFGTGYSSLAYLNNFPARSVKIDRS 477

Query: 887 LMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G         +L SII +A  +    +A+ +  E  ++ L  + CD +Q  ++  P+
Sbjct: 478 FIMGIKPGNDCAKLLESIIKLAHGLNMEAVAEGVETEQQLEILRELNCDTVQGFYLGRPM 537

Query: 945 GFNSILKLLKER 956
                 KL+ + 
Sbjct: 538 PKEEAQKLISDY 549


>gi|117918998|ref|YP_868190.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611330|gb|ABK46784.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 572

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 208/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +   ++    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNDF-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+  +L+  D++ARL G+ F +++   +        A  + K+
Sbjct: 187 DTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANRLLKA 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L E ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEEVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A++ +E  + Y   +     +++G+EALI+W HP+ G I+  +F+
Sbjct: 307 KEVRYRNHIESSLRMALKQNEFKVYYQAQVDSQTHQVIGMEALIRWLHPQDGLIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ +++ I  ++L    R    W  +         I +N+++  +   +L E +  
Sbjct: 367 SIAEEIGLMEEIGDWVLIEACRQAQEWLTRLTPVGHSFTIAVNLSASQIGHIDLYEKIVH 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  T      ++L  +E+ ++  P     +L R+ ++G+   LDDFGT  S L ++   
Sbjct: 427 ALEVTGLDAKALELEITENSLIEEPHEHAKVLDRIAQLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      +K   +L +++  A     T +A+ I      +  T   C+ 
Sbjct: 487 PISVLKIDKSFIASYDKDDKDTRLLAALLNFAYGFNVTSVAEGIETAEQAEFCTARNCNV 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL  +    
Sbjct: 547 LQGYLFSRPLEASEFEA 563


>gi|296130659|ref|YP_003637909.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
 gi|296022474|gb|ADG75710.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
          Length = 651

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 219/440 (49%), Gaps = 14/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + +       A  D+LTG+PNR+   D++   +D +A D   R  ++++DID++K IND
Sbjct: 202 LRSTALENARLALLDSLTGLPNRRLLSDQMQRAIDRAADDPEARVGLILLDIDRFKDIND 261

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD++L  +  R+   L+  D++ARL G+ F I+L            A+ +R   
Sbjct: 262 TLGHDHGDELLQQVAERLRHALRDDDVVARLGGDEFAILLPDVRTVANAERLAMRVRGLF 321

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
             P  L +  + V  SIG A        +S +++ A++AMY AK HR G  V S      
Sbjct: 322 TRPFELSDIALHVETSIGVACLPDHAADASALMRTADIAMYAAKHHRTGVSVYSPTADDS 381

Query: 701 RSDRVMIKEDLCLAVENS-------ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              R+++  +L  A+E+        +L L Y P I L  +  VGLEALI+W HP  G + 
Sbjct: 382 SPARLVLLGELHQALESRGDPGAEPQLELHYQPKIELATQRTVGLEALIRWRHPARGLLP 441

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE+  +I  +  F LE   R + +WR Q     + + +N+++ D+    + + 
Sbjct: 442 PGAFVPLAEQSGLIHRVTHFALEESVRQLAAWRAQG--EAVPVAVNLSAHDVASPAVVDM 499

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L+++     S +++  +E+ ++ +  R   +L RL  +G+ + +DDFGT  + +S +
Sbjct: 500 IELLLAEHEVEASLLEVEITETALVADRTRVVPVLERLSALGVRVAIDDFGTGTTSISQM 559

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
             +P   +K +   +    E   A    ++++++ +A +    ++A+ +  E   + L  
Sbjct: 560 RDLPVAELKIDRLFVADLGEGGRAGSEVVVQAMVDLAHSFGLRVVAEGVEDEATARTLEE 619

Query: 930 MGCDYIQDSHVASPLGFNSI 949
           +G D  Q    A P   +++
Sbjct: 620 LGVDRAQGYLWARPAPASAL 639


>gi|82524003|emb|CAI78682.1| hypothetical protein [uncultured gamma proteobacterium]
          Length = 650

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 212/442 (47%), Gaps = 14/442 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT +PNR +        ++ + + +       +IDI+  K IND LG   
Sbjct: 202 QLKFQAHHDPLTQLPNRDALSYVTQQAIESARSAEG-ELIFCLIDIEALKDINDSLGHEN 260

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +++R+   L+  D + R  GN+F +IL +   +  I   +  + ++      +
Sbjct: 261 GDILLNLISQRLKGSLRSSDHIGRFGGNKFAVIL-NHTETGNIEAISNKLLENFEATFEI 319

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
               + V A +G + + S    S  +++ AE A++ A K      +    +    +DR+ 
Sbjct: 320 NNHSLYVRAILGISIFPSHADNSQVLIQKAETALHKARKMALDFAIYDTSLDKNNADRLR 379

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A+ N  L L Y P + +    I  +EAL +W HP  G I    F+ IAE   +
Sbjct: 380 LTHDLRGAIHNDALKLYYQPQLDIRSGTIKSVEALARWIHPTQGFIPPDVFIEIAEHAGL 439

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I+++  ++L    R    W+       I + +N+++++L D  L   +  L++     P 
Sbjct: 440 IQSLTDWVLRTAIRQSAEWQKIGLH--ITVSVNLSARNLHDETLGTQVSNLLNYWNVKPE 497

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ L  +E+ +M +PE +R +L  L  +G+ +++DDFGT  S L+YL  +P D +K + S
Sbjct: 498 QLCLEITETSMMADPEHARTVLDGLDNLGVRISIDDFGTGYSSLAYLKQLPVDELKVDKS 557

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      E   +I+R+ + +A ++   ++A+ +  +    EL ++GC+ IQ  H A P+
Sbjct: 558 FVLNMSNDESDASIVRATVSLAHDLGLEVVAEGVEDQAAQDELQKLGCELIQGYHFARPM 617

Query: 945 GFNSILKLL-------KERFPL 959
               +  +L        E  PL
Sbjct: 618 PATDLTPMLIANSASNDEHKPL 639


>gi|172037158|ref|YP_001803659.1| hypothetical protein cce_2243 [Cyanothece sp. ATCC 51142]
 gi|171698612|gb|ACB51593.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 867

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 238/577 (41%), Gaps = 15/577 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I+++       + +F + E   + +   G+ V   D         P    + G  + 
Sbjct: 292 LGTIENITERKLVERALFEEKELAKVTLNSIGEAVITTDSQGIIQDFNPIAQQLTGWTTK 351

Query: 444 SMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                  +     I          I +     +  R +    ++A + + + + + I P+
Sbjct: 352 EAIYQPISKIFKLIDNGGNSLDNPIYEVLRSSQNQRERRTGILQAKNREQYEIDMVITPI 411

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              N  IL  + I  DIT+  +    +   A  D LTG+ NR+    +LT  L+ +   +
Sbjct: 412 RGQNYQILGTVLIFRDITQASQLAHQLSWEASHDPLTGLVNRRELEKQLTLALE-AYKSE 470

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N+   +  +D+D++K IND  G   GD++L  +T  +   ++  DILARL G+ FG++L 
Sbjct: 471 NIEHILCYLDLDQFKVINDTCGHVAGDELLKEVTHLLQARVRSSDILARLGGDEFGLLLK 530

Query: 623 SENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +  K    A  +R+ +         +  ++  SIG  +      T +  L  A+ A 
Sbjct: 531 GC-SLKKAEAIANNLRQLVKNFRFTWDNQVFSIGVSIGIVAINQDIKTITSFLNAADAAC 589

Query: 682 YHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           Y AK RG N V  ++ S +   +          L  A+ ++   L    II +   E V 
Sbjct: 590 YAAKERGRNCVYVYQDSDYEVTQQIGQSQWIVRLNNALTDNRFRLYSQKIISIQSPEKVH 649

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-- 795
            E L++        +S   F+  AE   ++  I+ +++    +                 
Sbjct: 650 HEILLRLLDESGNLVSPFAFIPAAERYNLMADIDQWVISNFFKVYSEAYQTQPDLDTTEF 709

Query: 796 ---ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
                IN+++  L +++LC  ++  +S    +P  +    +E+  + N   +  L+  ++
Sbjct: 710 KSLYTINLSAISLKNSQLCHFIEEQLSSYKVNPQHLCFEITETTAITNLTEAVQLIEAIK 769

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
           ++G    LDDFG+  S LSYL ++P D +K +GS +   T+  +   ++     +   + 
Sbjct: 770 RLGCYFALDDFGSGMSSLSYLKHLPVDYLKIDGSFVKNLTKDSVNYGLIDCFHRIGHVMN 829

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +A+ +  +  ++ L  +G DY Q   +  P+  +
Sbjct: 830 METVAEWVEDQEILQILEEIGVDYAQGYGIERPIPLS 866



 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 9/140 (6%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRN 451
                Q +        L +     +++  D     +      A   G+     + G    
Sbjct: 163 RYQVEQELKEKKAFLQLVLDNIPQLIFWKDTNSIFLGCNRLWAKAAGIVDPEQVRGKTDY 222

Query: 452 WL------PYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       ++    N+ + +R      +   + +L +  + R  + Q  W      P+ 
Sbjct: 223 DIYNDPNNKHLDPPNNNLNYYREQDLRVINTGKPQLNFVEQKRNPEGQEVWYNTNKIPIK 282

Query: 504 NSNGDILRYIGIANDITEQK 523
           +S G+I+  +G   +ITE+K
Sbjct: 283 DSKGNIVGVLGTIENITERK 302


>gi|15807290|ref|NP_296020.1| GGDEF family protein [Deinococcus radiodurans R1]
 gi|6460105|gb|AAF11843.1|AE002061_10 GGDEF family protein [Deinococcus radiodurans R1]
          Length = 856

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 113/429 (26%), Positives = 204/429 (47%), Gaps = 12/429 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +++   +   A  D LTG+ NR  F  R    LDL A        ++V DID  K I
Sbjct: 388 SALRETRVELSRQASHDQLTGLANRSFFYTRARQALDLLA--PGRSLGLIVADIDHLKAI 445

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G AVGD ++  L RR+ E ++  D++ RLSG+ F ++L    +   +   A  + +
Sbjct: 446 NDRFGYAVGDLLITELARRLCEAVRPGDLVGRLSGDEFVMLLSDLASPGDLRLVAERLLQ 505

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
            +  P       +  T S+G+            + K A+LA++ AK +G N   +F   +
Sbjct: 506 QLREPCVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQGRNMAVAFAGDM 565

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S+   +R M+ +DL  AV + +L L Y  I  L  + + G EAL++W HPK G I    F
Sbjct: 566 SAEEEERRMLSQDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRF 625

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  +  ++L+   R   +W+       + + +N+++     ++   G++A 
Sbjct: 626 IALAEESRLILELGRWVLDEACRQARAWQ--LPERGLTMAVNVSALQFEQSDFVAGVRAC 683

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       + L  +ES+V  +P  ++  L  L+ +G+ + +DDFGT  S LS L  +P
Sbjct: 684 LEQHGLPGHSLVLELTESMVHRDPRLAKQTLRELQALGVKVAMDDFGTGYSSLSMLKSLP 743

Query: 878 FDTVKFNGSLMTGST------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           F  +K +   +   +            +  ++ +A N++  ++A+ +        L  MG
Sbjct: 744 FGLLKIDREFLQDLSAASEQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMG 803

Query: 932 CDYIQDSHV 940
           CD  Q   +
Sbjct: 804 CDEAQGYWL 812


>gi|89899281|ref|YP_521752.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89344018|gb|ABD68221.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
          Length = 764

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 111/442 (25%), Positives = 219/442 (49%), Gaps = 13/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++ +  E I   A  D+LTG+ NR+ F   L     LSAT  +    V+ ID+D++K+IN
Sbjct: 317 QRLEQQELIRQLAQVDDLTGLANRKHFHHLLDAAC-LSATASSTSFAVLNIDLDRFKQIN 375

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   G+ VL    +R+  L      L RL G+ F +++    ++ ++      +  +
Sbjct: 376 DAFGHEAGNLVLHEFAQRLQRLGPAGSALGRLGGDEFALLVTPAGSAAQLQALGERVLLA 435

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF----- 695
              P     +E+T++AS+G + +     T SE+++ A+ AMY  KH G N +  F     
Sbjct: 436 ARQPFLFERQELTMSASVGISIFPDDGWTGSELMRCADAAMYRRKHGGRNGLSFFSSGTS 495

Query: 696 ----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                  S  + ++ ++ +L  A+ N E +L Y P+     E +V +EALI+W  P    
Sbjct: 496 GTLAEQRSALARQLTMEAELQRALVNHEFFLAYQPVFGRDAEHMVAVEALIRWRRPGGDV 555

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE+  +I  I  +++++   D+           + + +N+A+ + ++  L 
Sbjct: 556 VPPDLFIPVAEQSGLIVQIGRWVVKQACHDLAQLHRA-GFTDLQVNVNMAAPEFVNPNLP 614

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             + A++     +P  + L  +E +VM  P++   ++  LR++G  ++LDDFG   S LS
Sbjct: 615 GELMAVLQACGVAPRHLCLELTEGLVMKQPDKVIPVMVALRQLGCKVSLDDFGMGHSSLS 674

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            +  +P  ++K + S ++G  +     AI+R+I+ + ++++  +IA+ +  +  +  L +
Sbjct: 675 RMKMLPISSLKIDRSFVSGLPDDRGDAAIVRTILDLGRHMKLQVIAEGVETDAQLLFLRQ 734

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            GC  IQ   +  P     ++ 
Sbjct: 735 FGCTLIQGFLLGRPKTVPELMA 756



 Score = 42.2 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 7/115 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W  +    +   +   A++L + +G +H    +    +  +D       L        
Sbjct: 44  GRWWCEPQTGQWVLSTGAASLLDVGAG-LHPTGHSCFEQVVPDDVLRLMAGLRE----PG 98

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             +  EFR+    +   W+ +   P     G  L+  G+  D+T  + +      
Sbjct: 99  QAIACEFRIINEFDGLRWLRMVSEPHLAP-GQALQ-TGVVVDVTSSRLAAMRERF 151


>gi|254183238|ref|ZP_04889830.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|184213771|gb|EDU10814.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
          Length = 688

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR++  +        +A     +  ++ +D+D +K IN  L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINGSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKAFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRSGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFIPVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P  +  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPHTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLETLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|325271315|ref|ZP_08137848.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas sp.
           TJI-51]
 gi|324103552|gb|EGC00866.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas sp.
           TJI-51]
          Length = 706

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 244/582 (41%), Gaps = 14/582 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDI 434
           V+      +          Q +  + E         +  + + +   D         P I
Sbjct: 122 VLKPKVQALLDQQRNRRMLQRLTRELEAARAFNGSILENAAEGILVVDAQGVISFANPAI 181

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           + +L      + G     L  +         +        +     ++ ++R    +   
Sbjct: 182 SRLLAAPVQHIQGAQLLDLVQL-PAACPWLESEFYRAYLGQEIYRVHDAQLRTLAGELVP 240

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +   P+          +    D++  +   + +   A  D LTG+ NR+ F       
Sbjct: 241 VALSCAPLPADQ---QAMVVTVLDMSAVRNLHQQLEYQAVTDPLTGLLNRRGFYQAAEGA 297

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +   D  +  +M +D+D +K+IND LG   GD VL  +  ++ + L    +LAR+ G
Sbjct: 298 LLRNERSDKAQ-ALMYMDLDGFKRINDTLGHDAGDRVLRWVAEQLKDCLGSEALLARMGG 356

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F  +  S     +   +A  + + +++   +   ++ +  SIG A++         +L
Sbjct: 357 DEFTALFDSLPYPEQAGRYAERLLERVSIRHEVDGLDVCLGVSIGIATYPECGANVEGLL 416

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           + A+ AMY AK  G      +    +     R+M+++ +  A+E  +  LVY P +  +D
Sbjct: 417 RAADAAMYAAKQAGRQQYRFYDQELNGRARSRLMLEDSVRTAIEQQDFTLVYQPQVSFID 476

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL++W HP  G++    F+ + EE  +I  +  ++  + A    +W       
Sbjct: 477 GRLRGFEALLRWQHPSVGDVPPGLFIPLLEEARLINRLASWIYRQGAAQRHAWYQHFPA- 535

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + I+++    +   L E +Q +I      P+++++  +E+ +M N + +   + RLR
Sbjct: 536 DLVLGISLSRAQFVMPGLVEELQRVIHFYQLDPAQLEVEVAETSLMYNIDAAVKQIHRLR 595

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
           ++G+ + LDDFG     L  L  +P DT+K +  L+    +     A++RS+I +  +  
Sbjct: 596 ELGVRVALDDFGAGDCSLRMLRDLPIDTLKLDRHLVARLPDTAVDTALVRSVISLCADYG 655

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            T+IA+ +        L   GC+Y+Q   VA P+  +   + 
Sbjct: 656 ITVIAEGVETPAQAAWLNANGCEYVQGFLVAHPMTASDATRF 697


>gi|149184737|ref|ZP_01863055.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Erythrobacter sp. SD-21]
 gi|148832057|gb|EDL50490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Erythrobacter sp. SD-21]
          Length = 738

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 132/552 (23%), Positives = 258/552 (46%), Gaps = 17/552 (3%)

Query: 411 VLGSGDI-VWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTIL 468
           +  SG    W  D        +P I   LG  +  +   P+++ L  +   D +     L
Sbjct: 44  LENSGVACFWATDARGVLSYLSPAIFQRLGRKANKAFDQPLQHILEPV-PGDGEARSLGL 102

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                     L  E     AD     + +  RP+ ++N + + + G A DITE+ +S E 
Sbjct: 103 KLGTRKSFAGLTVETGDPQAD---LVLRMSGRPLYDNNDEFVGFRGTATDITEEFRSEEE 159

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               A  D+LTG+ NR     R+ + L    +       ++++D+D++K++ND LG A G
Sbjct: 160 ASRLAKFDSLTGLANRHRMEHRIDSTLQTFRSAKRA-AALLMLDLDRFKQVNDTLGHAAG 218

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  +  R+ +++     + RL G+ F I++   ++  ++ + A  + + ++ P ++ 
Sbjct: 219 DQLLQQVAERLNQVISGRGEIGRLGGDEFQILIPDMDDRGELGEIAKKIIQMLSQPYSVE 278

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
           E   T+  S+G A      +   E+ + A+LA+Y +K+ G      +   +    + R  
Sbjct: 279 EGRCTIGCSVGIAIAPYDGVERDELTRAADLALYASKNGGRGQFRFYAADLEHEANLRKR 338

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++DL  A+E     L Y P + L   ++V LEA   W+    G +S   F+ +AE   +
Sbjct: 339 MEDDLAEAIEAGNFTLEYQPCVELGSNKVVALEAQYCWEDEDRGRVSQETFIPVAEGSRL 398

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  + L +   +   W +      + + INI+      N   + +  ++ +T   P+
Sbjct: 399 IIPIGEWALRKACEEAREWPES-----LRLSINISPIQFEANGFIDMVARILDETGLDPA 453

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ L  +ESV++G+  +    LG L K+G+ LTLD FGT  S LSYL   PF+ +K + +
Sbjct: 454 RLDLELAESVLLGDASKVDAALGALFKLGVRLTLDQFGTGLSSLSYLRRAPFNALKISAN 513

Query: 887 L---MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
               + G+    + ++R+++ +A  +    IA  ++    + EL ++G  ++Q    +  
Sbjct: 514 FFEPVMGNDLGDMELVRAVVALAGAMGMETIATGVHAMDLMAELKKIGVSHVQGFVFSEA 573

Query: 944 LGFNSILKLLKE 955
           +    +L+ + +
Sbjct: 574 VNQKVLLEEIAQ 585


>gi|163855675|ref|YP_001629973.1| cAMP phosphodiesterase [Bordetella petrii DSM 12804]
 gi|163259403|emb|CAP41703.1| probable signalling protein [Bordetella petrii]
          Length = 855

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/485 (24%), Positives = 218/485 (44%), Gaps = 20/485 (4%)

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--------EQKKSLEGILCNA 533
            + V+  D     +           G    ++    D +        E++++ + +    
Sbjct: 370 TYPVKRRDGS---VAGTFAFYFRQGGQPDTHLERIADASVHLCALAIEREENQQRVNQLV 426

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR      +  +L    TD         + +D++K IND LG A GD VLV
Sbjct: 427 RYDILTGLPNRGLLRQHIDELLS---TDPEQEIAFFYLGLDRFKDINDTLGHASGDLVLV 483

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               R+   L     LAR+ G+ F +++    +  + A  A  +++    PI++    + 
Sbjct: 484 ETGNRLKSHLDDGQFLARVEGDMFVLVVPDC-DVHRAALVAAHLQRVAGAPIDISGFSLD 542

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDL 711
            T SIG + +  S     ++L+NA+ AM   K  GG     F   ++    DR+++   L
Sbjct: 543 PTVSIGISQYPESSRDREDLLRNAKSAMGQVKASGGGEFLFFSSGMNEVARDRLLLGTAL 602

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+    L L Y P +R    E+ G+EAL +W  P++G I    F+ +AEE+  I+AI 
Sbjct: 603 RRAIAGGCLRLEYQPQVRPDSGELYGVEALARWRDPEFGVIPPGRFISLAEEIGEIEAIG 662

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            + L    R +  WRD+    P+ + +N++      ++L + +  L+ +       + + 
Sbjct: 663 RWALREACRQMAVWRDEGVQVPV-VSVNLSPLSFRGSDLPDFVAGLLQQYALPGECLTIE 721

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  M        ++  +R +G+ L++DDFGT  S LS L  +P   VK + S +   
Sbjct: 722 ITESAAMALTAGMLEVIHGIRALGVGLSVDDFGTGFSSLSNLANLPVTEVKIDRSFIDKC 781

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            ++    +++ ++I + +N+  T++A+ +  E   + L    C  IQ    + PL    I
Sbjct: 782 LQESRLQSLVMAVIGIGQNLHLTVVAEGVETEAQRELLKAHHCPVIQGYLFSRPLPPADI 841

Query: 950 LKLLK 954
              ++
Sbjct: 842 PNWIR 846



 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 78/277 (28%), Gaps = 31/277 (11%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTIL 468
           A+  S       D     +        + G     + G      LP         +    
Sbjct: 18  ALEQSIVAAVLVDENDCVLFFNQAAEQLWGYERHEVLGKNMQPLLPKSLRGAHGGYVRKN 77

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 +   +  E  +     Q  W +  +  + +  G I  Y+ +  D++++    E 
Sbjct: 78  RVGGEAKVAGMSREVLMERKSGQQVWAMFSLSKI-DLEGRI-HYLALVRDVSDEVAMREQ 135

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL----G 584
                         NR   +          A ++  RP +++    +   +N       G
Sbjct: 136 --------------NRMLLI----------AVNNTDRPVLVLDAQRRIAHVNRAFTELWG 171

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             + + +    +  +       D         +G   + ++  +   D      +  + P
Sbjct: 172 YEMDEVLGREPSSFLTSPNMPVDEFRHFDSRPWGRERLQDDALVVSRDGKETWIRVSSSP 231

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           I   + +     S+   +  + +    ++ ++   A+
Sbjct: 232 IAGHDDDGFQGYSVDVITDITEERQIRDLERDVLTAL 268


>gi|289666117|ref|ZP_06487698.1| putative sensor protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 695

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 205/421 (48%), Gaps = 7/421 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR    + L   ++ +  D   R  VM+I++D +K IND  G  +GD +LV 
Sbjct: 264 HDPLTRLPNRVLLHEHLLQNIERAQRDGQ-RFAVMLINLDGFKVINDGYGHQLGDRLLVV 322

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+    +    LARL  + F  ++    +    A  A  + + +A+P  +   E+ +
Sbjct: 323 VAERLNAHRRANGSLARLGADEFV-LVADIADPEDAAALAAHVVQDLAVPFLISNHELRL 381

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           ++S G A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L 
Sbjct: 382 SSSSGIALYPEDANSGPQLLTHADAAMNHAKHAGRNRYSFFERSMTATTRDRLQLLQELP 441

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  +  
Sbjct: 442 RALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLGS 501

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L +  R +  WR   +     + +N+++  L    L + +   +S+   +P ++ L  
Sbjct: 502 WVLRQACRQMRDWRQAGHG-DWRVAVNLSALQLASPSLLDEVATTLSEFTLAPGQLTLEI 560

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +E++ M + E     L +L  +G+ + +DDFGT  S L YL  +P   +K + S +    
Sbjct: 561 TETMAMRDAEACLRTLVQLNALGVRIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMD 620

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           S+ + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     +
Sbjct: 621 SSAEDIAIVAAVVALAHTMRLQVVAEGVETTAQRNTLERLGCDQLQGYLLGRPMDAERFI 680

Query: 951 K 951
            
Sbjct: 681 A 681


>gi|86742420|ref|YP_482820.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86569282|gb|ABD13091.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 793

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 212/440 (48%), Gaps = 8/440 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + L      A  D LTG+ NR+ F++RLT     +         ++++D+D++K+IND
Sbjct: 314 EVQQLAESKVLARTDELTGLANRRGFIERLTKAEQRA--TGVGTFALLLLDLDRFKEIND 371

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L  +  RI + L+  D+ ARL G+ F ++L    +       A  +   +
Sbjct: 372 SLGHQVGDALLAQVGTRISDALRPGDLHARLGGDEFAVLLEH-ADIEAAKRVADRVLAVL 430

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSF 700
             P ++    + V ASIG A +      +  +L+ A++AMY AK  R G           
Sbjct: 431 GDPFDVGGVTLHVGASIGAAVYPDHAEDAHILLQRADVAMYAAKSGRTGVESYRPGSDVN 490

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ + E L  A+   +L + Y   + L   +   +EAL++W HP  G +   EF+ +
Sbjct: 491 SLVRLDMIESLRAALGTGQLEVHYQVKVDLDSGQANAVEALVRWRHPSRGLLGPEEFVPL 550

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I+ + + +LE        W        + + +N+++ DLLD    E +  ++S 
Sbjct: 551 AEQAGFIRMLTIEVLETALGQCRQWHSAGFD--VAVAVNLSASDLLDRGFPEQVSGMLSG 608

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP+ ++L  +E+ +M +  R+  +LG LR +GI + +DD+GT  S L+ L  +P D 
Sbjct: 609 FGLSPTALELEITETTLMLDRVRTAAVLGELRDLGIGIAVDDYGTGYSSLARLWELPVDV 668

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       +  AI+RS + +A  +   I+ + +     ++ L   GCD  Q  
Sbjct: 669 LKLDKSFIQRMEVDGRAEAIVRSTVGLAHALGLRIVVEGVETAGAMRMLRDFGCDLAQGY 728

Query: 939 HVASPLGFNSILKLLKERFP 958
            +  P     + + L+ R P
Sbjct: 729 FLGHPGPSEQVTEQLRRRAP 748


>gi|71279060|ref|YP_267701.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144800|gb|AAZ25273.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 821

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 209/437 (47%), Gaps = 6/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A  D LTG+PNR     +L   L   A   +    V+ +D+D +KK+ND  
Sbjct: 365 QKTKELENIAMYDLLTGLPNRNMLNYQLRKSLANIARHKSG-VAVLFLDLDDFKKVNDSN 423

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+    R+   +   D+ +R  G+ F I+L   N+     + A  +      
Sbjct: 424 GHNIGDKLLIQAAERVRVSVGELDLASRFGGDEFVIVLSHLNSVDDAIEVAEKVLLQFKE 483

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
            I L      V+ SIG A   S+   S +++ +A++AMY AK  GG     +        
Sbjct: 484 SIKLGSNIFYVSTSIGIAYTESATEKSDDLISHADIAMYEAKDNGGGQYHIYHQEMFQRV 543

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + RVM++ ++  A+   +  L   P I    +++ G EAL++W HP+ G IS  +F+ I 
Sbjct: 544 AHRVMLEGEVRQALAKQQFSLSLQPQICAKTKKLYGFEALLRWQHPERGMISPEDFIPIL 603

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    +  +  +++ R   +++    +  +  I I IN+++   +D  L   +  L+ + 
Sbjct: 604 ENSQHMIELGYWIIRR-CFELVISIKEYGLENIRIAINLSAGQFMDANLPHFLNDLLVEF 662

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +    +L  +E  ++ + + +  ++  L+ IG S  +DDFGT  S L+YL  +P D +
Sbjct: 663 SLTAKNFELELTEQTLVKDMDHTIAMMESLKVIGFSFAIDDFGTGYSSLAYLKKMPVDVI 722

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G         I+ S I M KN+  T++A+ +  +  ++ LT   CD IQ  +
Sbjct: 723 KIDKSFIFGMLENHSDFQIITSTIAMVKNLGLTVVAEGVETQAQLRSLTENDCDIIQGYY 782

Query: 940 VASPLGFNSILKLLKER 956
            + P+    +  +L ++
Sbjct: 783 YSKPIPEKDLFTMLDKQ 799


>gi|77457479|ref|YP_346984.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77381482|gb|ABA72995.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 760

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 155/664 (23%), Positives = 286/664 (43%), Gaps = 18/664 (2%)

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            +  +    +A    A   +    F    G++      L      L+  W     ++  +
Sbjct: 61  IWRWIGATCLAGGIWAMHFISMLAFQAPIGIQYDLPVTLFSLVIALLASWLAMHTLSTPQ 120

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                 ++ A+V GL +  +           A+ Y+   +F      ++    +   V  
Sbjct: 121 PSLLQYLKTAIVIGLGIAGMHYVGMAAIESAASAYYDPTLFLASIVIAIGASFAALWVAG 180

Query: 421 WDIVRDRVTTTP---DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +      +         A ILG    SMH      L  +    +        S +     
Sbjct: 181 YLREGSGLHIQMLKYVAALILGAGILSMHFTGMAALQLVLPEGQLPTLASQTSHLQLGLT 240

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                  +           +  + + N   D+ R   + + + + + SL+ +   A  D 
Sbjct: 241 VALITLLIL---GSAISAALADKKLQNKEHDLRRVNALLSQLDQARMSLQHV---ANYDA 294

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT + NR+ F       L    T +     VM +DID +K+IND LG   GD++L  + +
Sbjct: 295 LTNLINRRGFNQIFAEKLSQ-KTSEGGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIAQ 353

Query: 598 RIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            I   ++   D++AR  G+ F  ILI   +  +  + A  +   +  PI L  R + +T 
Sbjct: 354 HIKGSVRSHEDVVARFGGDEF-CILIGLRDREEARNLAQRIMLKMKEPIELAGRRMVMTT 412

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLA 714
           SIG + +     T  E+LK+A+LA+Y +K  G N V  F  +  +  S  + ++E+L  A
Sbjct: 413 SIGISLFPEDGSTCDELLKHADLALYQSKGAGRNGVHFFDSNLKNRASLELQLEEELRHA 472

Query: 715 -VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
             + + L L Y PI  L   ++  LEALI+W HP  G ++   F+ IAE   +I  ++ +
Sbjct: 473 LRQENGLLLYYQPIFELKTGKVTKLEALIRWQHPVHGLLTPDRFIAIAENNGLIAELDNW 532

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L +   D+           + I  N +  +L   EL   ++  +     +P R++L  +
Sbjct: 533 VLRKACEDLGELSRHGCEE-LKIAWNCSPLNLAREELANEIEHALRSAGVAPERLELEVT 591

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+ +MGN   + +LL ++R +G+SL++DDFGT  S L+YL  +P +T+K + S +     
Sbjct: 592 ENALMGNIANTLVLLRQIRALGVSLSIDDFGTGYSSLAYLKRLPLNTLKVDRSFILDIPK 651

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               + I+++II MA  +   ++ + +      + L R GCD+IQ   ++ P+    +  
Sbjct: 652 ATADMEIVQAIIVMAHTLHLQVVTEGVESLEQYEFLERSGCDFIQGYLLSRPVPLAELRP 711

Query: 952 LLKE 955
           +L+E
Sbjct: 712 VLEE 715


>gi|209542979|ref|YP_002275208.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530656|gb|ACI50593.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 694

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 224/444 (50%), Gaps = 11/444 (2%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
                  D + + +++E +   A  D LTG+PNR SF DRL + + L+  +       + 
Sbjct: 230 GLASYLIDDSVRAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGT-FAFIG 288

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID++++K+IND+ G A GD+VL  L RR+  LL+  + +AR  G+ F  +     +   +
Sbjct: 289 IDLNRFKEINDLRGHAAGDEVLRILGRRLKGLLRDGEFVARTGGDEFAALYR-MGDRRDL 347

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--G 688
           +DF   + +++  P+ L   E+    S+G A W         +  NA+LAMY AK     
Sbjct: 348 SDFLGRLERALFKPLRLDGFEVQSGGSLGVAIWPDDTADKELLANNADLAMYRAKADPIR 407

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                   +      R ++  DL  A+   +L L Y     +    I G EAL++W+HP+
Sbjct: 408 KICFYKPEMDEALRARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQ 467

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G+IS +EF+ +AEE  +I  I  ++L    R+  SW      PP  I +N+++   +  
Sbjct: 468 IGSISPAEFIPLAEENGLILPIGEWVLRTACREAASW-----EPPYKIAVNLSAVQFVHA 522

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + ++ ++++T  SP R++L  +E+ +  + +R+  +L  ++ +G+++ LDDFGT  S
Sbjct: 523 DLAKLVRTVLAETGLSPERLELELTETTIFADRKRALHVLREIKALGVTIALDDFGTGYS 582

Query: 869 LLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L   PFD +K + S      +  + +AI+R+++ + K+    ++A+ I     +  
Sbjct: 583 SLDTLRAFPFDRIKIDRSFCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQLSM 642

Query: 927 LTRMGCDYIQDSHVASPLGFNSIL 950
           L   GCD  Q   +  P     I+
Sbjct: 643 LNSEGCDEAQGFLLGRPAPLGQIV 666


>gi|237507329|ref|ZP_04520044.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
 gi|234999534|gb|EEP48958.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
          Length = 688

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I+  A  D LT +PNR++  +        +A     +  ++ +D+D +K IN  L
Sbjct: 248 RLSGQIVRMAAFDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINGSL 306

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL + ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +  
Sbjct: 307 GHPAGDEVLKTFSQRLLCCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRK 366

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
                 + + VT SIG A +     T+  +L++A+ AMY AK  G      F   +    
Sbjct: 367 GRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAA 426

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  + ++  L  A+++    L + P  R     + G EAL++ +HP  G ++  EF+ +A
Sbjct: 427 ARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPMEFISVA 486

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  +++    R +  WR   +     I IN++ + L   +L   +  ++   
Sbjct: 487 ERSGQIIEIGYWVIRETCRHLRRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAE 545

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P ++    +ESV M +P  +  ++   +  G  + +DDFGT  S L+YL       +
Sbjct: 546 HVEPRQLMFEITESVAMEDPPHTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQL 605

Query: 882 KFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +        E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ  
Sbjct: 606 KIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGF 665

Query: 939 HVASPLGFNSILKLL 953
            +  P+       ++
Sbjct: 666 LLGRPVPPEEFEAMV 680


>gi|148975502|ref|ZP_01812373.1| PAS:GGDEF [Vibrionales bacterium SWAT-3]
 gi|145964930|gb|EDK30181.1| PAS:GGDEF [Vibrionales bacterium SWAT-3]
          Length = 822

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 216/436 (49%), Gaps = 10/436 (2%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE+KK+ +     A  D LTG+ NR     +L   +  S   ++    ++ +DID++K
Sbjct: 378 DLTEEKKNFD---FLAHHDPLTGLANRLLATKKLDEEIKRSREHNSF-FLLLYLDIDEFK 433

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG   GD++L++++  +  L+     +AR+ G+ F ++    + S      A  +
Sbjct: 434 TINDSLGHGQGDNLLINVSNILTTLVGNNGFVARMGGDEFMVVFSDISLSEG-EQLADRL 492

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +S+  P       I V ASIG   + +   +   +++NA+ AMYHAK  G +    +  
Sbjct: 493 NQSLRKPYYADNNSIFVAASIGVCEYPTHGSSGETLIRNADTAMYHAKRNGRDQYRVYAD 552

Query: 698 SSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   +I+ +  L  A+ N EL + + P + L  +EI+G EAL++W HPK G +   
Sbjct: 553 KMTHEVNDLIETNMGLHQAIANDELEVFFQPKVDLDSQEIIGAEALVRWRHPKLGLLPPV 612

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGM 814
           +F+ +AE+  +I  I+ ++ +++A  I  W+        +   IN +++     +L E +
Sbjct: 613 DFLEVAEKSDLIIDIDKWVFKKVANLITEWQRSGINLEGVTFSINFSARMFYMTDLAEQL 672

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q ++ +T   P ++ L  +E  +M + E     +  L   G  + +DDFGT  S LS L 
Sbjct: 673 QVILDETDCKPHQLLLEITERDMMRDFETCSRTIEVLHSKGYKIAIDDFGTGYSSLSVLK 732

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D VK + S +           I  +++ +A+ ++ ++IA+ +  +  +K L ++GC
Sbjct: 733 NLSADCVKLDRSFIEDINSSNVDYEITCAVLKLAQILDFSVIAEGLETQNHVKTLRQIGC 792

Query: 933 DYIQDSHVASPLGFNS 948
            Y Q    A PL  + 
Sbjct: 793 KYAQGYFFARPLPIDD 808


>gi|66047287|ref|YP_237128.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257994|gb|AAY39090.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 705

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  V+ + +D +K IN+
Sbjct: 261 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAVLCVGLDDFKGINE 319

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 320 QFSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 379

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 380 EAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 439

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 440 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 499

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I  I  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 500 LAEQNGTIIVIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 558

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 559 IYRLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 618

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 619 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQG 678

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 679 YLYSKPLPGRELLAYLKQ 696


>gi|238784009|ref|ZP_04628025.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia bercovieri ATCC 43970]
 gi|238715117|gb|EEQ07113.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Yersinia bercovieri ATCC 43970]
          Length = 664

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 244/555 (43%), Gaps = 12/555 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              V  +  ++   D                G     + G     L         + R  
Sbjct: 113 EQVVSEANSVIVILDKDGYVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASS-RKN 171

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++ F   R    + E  V     +  ++       S S  +    I    DIT+++++ E
Sbjct: 172 IEGFF-QRGASYEVERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQE 230

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   
Sbjct: 231 RLRILANTDMITGLPNRHAIHERINSAI---QTRGDTSVGIIYLDLDNFKKVNDHYGHMF 287

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++  I   L+  ++LARL G+ F +++ +     ++      +   + +P  +
Sbjct: 288 GDRLLKDVSLAILSCLEENEMLARLGGDEFIVLVENSC-LNELEATTQRILNRMKLPFRV 346

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
              E+    SIG A       T   ++++A+ AMY AK  G      F     +   + V
Sbjct: 347 GLIEVYTGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKRTYSIFSQEMNKKVSEYV 406

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  +L   +E  +L + Y P I     ++  +EAL++W  P+ G I+  EF+  AEE  
Sbjct: 407 WLDTNLRKGLEQHQLQVFYQPKISTQTGKVHSVEALVRWLSPERGLIAPLEFISYAEESG 466

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L+   +  + W+ +     + + +N++++ L+D  +       +  +    
Sbjct: 467 LIGPLGKWVLQTSMQQAVDWKSRGIN--LRVAVNVSARQLIDEAIVTSFIESLEASDLES 524

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S + +  +ES ++ + + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + 
Sbjct: 525 SLVDVELTESCLIDDEDAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQ 584

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G        +++R+II +A+ ++  +IA+ +    + + L  +G D  Q    A P
Sbjct: 585 SFVRGIDNNPISQSLVRAIIVVAEALKMRVIAEGVETTGEEEFLDSIGIDEKQGFLYAKP 644

Query: 944 LGFNSILKLLKERFP 958
           +  + +   L  + P
Sbjct: 645 MPADELEHWLVTQHP 659


>gi|329928389|ref|ZP_08282259.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328937825|gb|EGG34231.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 672

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 217/430 (50%), Gaps = 12/430 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+QD +TG+PNR        T        +  + T++ +D+D++K IND LG  VGD
Sbjct: 241 EKLAYQDTITGLPNRNEMNRFFRT------NAETDQITILFLDLDQFKAINDTLGHNVGD 294

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            ++  + +R+ + ++    + R+ G+ F +IL  +++       A  + + I    ++  
Sbjct: 295 LLVQEVGKRLRQFIRSGQQVFRIGGDEFLVIL-KQSDPNYAQRLADDILQQIKKVYHIDG 353

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
            E+ VT SIG +  +      + +LKNA+ AMY AK  G N    +          ++ +
Sbjct: 354 NELYVTVSIGISIGSVHSSDRTTLLKNADTAMYKAKGLGKNQQCLYDEEMGLQEVRKMEL 413

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL  A+E  E ++VY P   +  + +VG EAL++W HP+ G IS  EF+ IAEE  +I
Sbjct: 414 EKDLQRALEMKEFFIVYQPKWNVQSDRLVGFEALLRWRHPRLGVISPQEFIPIAEETGLI 473

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  + LE   +    W+D   + P  + +N++ +    + L E +Q ++ +    P  
Sbjct: 474 IPMTRWTLEEACKQCRVWQDSGIVQP--VSVNLSVRLFHGDNLLELIQNVLRQADLEPRL 531

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES+V+ +       LG +R +G+ +++DDFGT  S +  L  IP D +K +   
Sbjct: 532 LELEITESMVLHDVNDIIRQLGNIRSLGVKVSMDDFGTGYSSIGLLDRIPIDALKLDRQF 591

Query: 888 MTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   + AI+ +++ MA+ +   +IA+ +  +  I  LT +GC  +Q  +   P+  
Sbjct: 592 TNDLDTPSKRAIVNAVVLMAEKLNLDVIAEGVENKEHIDFLTGLGCHVMQGYYYGKPMDI 651

Query: 947 NSILKLLKER 956
           + I   + ++
Sbjct: 652 HEIEVWMYDQ 661


>gi|302558232|ref|ZP_07310574.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
 gi|302475850|gb|EFL38943.1| sensory box/GGDEF family protein [Streptomyces griseoflavus Tu4000]
          Length = 633

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 214/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ   +R+ T LD +      R  +M+ID+D+++ +ND LG   GD +L+
Sbjct: 193 LRDPLTGLPNRQWLQERIWTALDDAER-IGARAALMLIDLDRFRSVNDTLGHLAGDRLLL 251

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +  +++ P++L    + 
Sbjct: 252 QIADRLRLALPRGAEAARLGGDEFAVLLPVADSTTSATRVARGLVAALSSPLDLDGLTLV 311

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +      +  +L+ A++AMY AK  R G      +  S   DR+ +  DL 
Sbjct: 312 LEASAGVAVFPDHADDAEGLLRRADVAMYQAKRDRTGVEAYESKRDSNTPDRLGLLGDLR 371

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 372 RALDAREVELHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 430

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 431 YVLETALGQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 488

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 489 TEHVLLEDPQRAADTLNALTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 548

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  + CD +Q   VA+ +    + 
Sbjct: 549 VDAEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPEEMT 608

Query: 951 KLLKER 956
             L  R
Sbjct: 609 AWLLAR 614


>gi|209966615|ref|YP_002299530.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [Rhodospirillum centenum SW]
 gi|209960081|gb|ACJ00718.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [Rhodospirillum centenum SW]
          Length = 899

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/651 (23%), Positives = 281/651 (43%), Gaps = 27/651 (4%)

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
              Y   +G  RAVLL+       +W +        R  +  +         +    I  
Sbjct: 231 LCAYVQERG-IRAVLLVSLMSGGRLWGLLAGFDPQPRRLSPSVCALAEALGEIAAAQISV 289

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT----TPDIATILGL 440
              +    +           ER + A+  + D+    +  RD +         +A I G 
Sbjct: 290 MEER---VSAGARLAASRSIERLAAALRANHDLAAAVEERRDDLHVLFAPDAWVAYIDGE 346

Query: 441 ASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                  P   WL   +   D +    ++ +      G  +   R+ AA + +  ++ R 
Sbjct: 347 MRSEGTPPSPGWLMEMLERTDVERRDGVVAACGPEAPGDYRAVLRIEAAPDAWLLILRR- 405

Query: 500 RPMSNSNGDILRYIGIANDITEQK------KSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            P   + GD+     +   + E+       ++   +   AF D +T +PNR   L  L  
Sbjct: 406 SPEPWTAGDLDSAQELHRLMVERHAELYRVRTEMRLHRLAFYDPVTELPNRSFLLQDLQR 465

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L +        P +++I +D+YK +   LG    D ++ ++ RR+   L   D LAR+ 
Sbjct: 466 ALAV-----GEDPALLIISLDRYKTLAGSLGFTAADRLVAAVARRLEGCLGPGDKLARVD 520

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G  F +++ +   +      + A+R+++  P+ +  RE+ VTAS+G  S   +     E+
Sbjct: 521 GGEFAVLVPATRGAEGTGLISHAVREALRNPVEVEGREVFVTASLGVVSSAQAHGLPMEV 580

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLA-VENSELYLVYHPIIRLM 731
           L+NAE+A   A+  GG           R      + + L  A   +  +   Y PI+ L 
Sbjct: 581 LRNAEIAALEAESSGGGTRSFEAAMRARLTERYDLYDRLRRAVYFSGGIRTAYQPIVDLA 640

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D  ++G E L +W  P  G IS SEF+ IAEE  +I  +   +L +  R +  W      
Sbjct: 641 DGRLLGFEVLARWQDPDRGEISPSEFIPIAEETGLIVPLGNQILMQGCRQVGRWNKLRPD 700

Query: 792 PPIFILINIASKDL--LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
            P+++ +N++   +     +L   ++ ++  T   PS +KL  +ES ++ N   +  +L 
Sbjct: 701 APLYVSVNLSPYQMDPGRIDLARWVRGVLELTGADPSWVKLEITESGLIANASNAVEVLH 760

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAK 907
           RLR +G+ L +DDFGT  S LSYL  +P +++K + S + G  E  +   ++R+I+ +A+
Sbjct: 761 RLRDLGVGLAIDDFGTGYSSLSYLQRLPVESIKIDRSFIAGMGESVQGTELVRTIVQLAR 820

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  +++A+ I     ++++  +GC   Q  H A PL       L++   P
Sbjct: 821 ILGFSVVAEGIETPDQLEQVRALGCGRGQGFHFARPLTPGEAEVLVQGAAP 871


>gi|239990937|ref|ZP_04711601.1| putative phosphodiesterase [Streptomyces roseosporus NRRL 11379]
          Length = 726

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 216/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  + L+ +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 254 LRDPLTGLPNRQWLLERTWSALEDA-ESIGTRSALVLIDLDRFRAVNDTLGHLAGDRLLL 312

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L   +++      A  +   ++ P++L    + 
Sbjct: 313 QIAERLRLALPRGAEAARLGGDEFAVLLPHTDSTTSAQQVARHLVAELSSPLDLDGLTLV 372

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 373 LEASAGVAVYPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 432

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 433 RALDAGEVELHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 491

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+       G+ A +++       ++L  
Sbjct: 492 YVLETALAQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGGVAARLARHGVPAGALQLEI 549

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 550 TEHVLLEDPQRAADTLAGLTAHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 609

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  I +A ++   ++A+ +  +   + L  + CD +Q   VA+ +      
Sbjct: 610 VDHEDAEIVRCTIDLAHSLGLVVVAEGVEDDTTWERLRDLRCDAVQGWLVAAAMPPQETT 669

Query: 951 KLLKER 956
             L+ R
Sbjct: 670 AWLRAR 675


>gi|119899169|ref|YP_934382.1| ammonia permease [Azoarcus sp. BH72]
 gi|119671582|emb|CAL95495.1| probable ammonia permease with sensory box/GGDEF domains [Azoarcus
            sp. BH72]
          Length = 1129

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/579 (20%), Positives = 228/579 (39%), Gaps = 10/579 (1%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            L+   +++ V       + +  + +   + +   GD V   D         P    + G 
Sbjct: 547  LLFTGLVRDVTDRRSMEEQLQRERDLAQVTLASIGDGVITTDEAGLVQYLNPTAELLTGW 606

Query: 441  ASGSMHGPIRNWLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEF-RVRAADNQFHWMIIR 498
             S    G     +  +            + + + + R   + E   +   D +   +   
Sbjct: 607  TSEEARGHNIAAIYRLEDEGTGAVLENPVRTVLAHGREIRRSEHGLLLRRDGERVPVQDT 666

Query: 499  IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              P+ N  G ++  + + +D+T   +    +   A QD LTG+PNR+ F  RL  +++  
Sbjct: 667  AAPIRNRLGYLMGVVLVFHDVTVTLQLTRELTLQASQDALTGVPNRREFERRLGELIERP 726

Query: 559  ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                     +  +D+D++K +ND  G   GD++L  +T  +   L+  D+LARL G+ FG
Sbjct: 727  PAR-GASHVLCYLDLDQFKVVNDTCGHVAGDELLRQVTALLSGRLRSADLLARLGGDEFG 785

Query: 619  IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +I  +                          +   +  SIG      + +    +L  A+
Sbjct: 786  VIFFNCPVEKATEMAEGLREAIRDFRFAWEGKVFAIGVSIGLVPVAGNDLHMGRLLSAAD 845

Query: 679  LAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
             A Y AK  G N V  +R        +  ++     L  A+E   L L   PI+ L    
Sbjct: 846  AACYAAKEGGRNRVHVYRPDDDLLMEQHGQMQWVSRLHDALEGDRLRLYAQPIVPLEPGR 905

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             +  E L++ +  +   +S   F+  AE   ++  I+ ++   +   +     Q      
Sbjct: 906  AIHYEILVRLE-EEGRIVSPGSFIPAAERYNLMPRIDDWVFRNVLAWVSDTYRQCGRVDA 964

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
               IN++   L D  L E ++A +++       I    +ES  + N  R    +G ++++
Sbjct: 965  TWCINLSGNSLNDERLLEDIRARLARAALPAGAICFEITESSAVANLSRVVSFIGEVKRL 1024

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
            G +  LDDFG+  S  +YL  +P D +K +GS +          A++ +I  +   +   
Sbjct: 1025 GCAFALDDFGSGLSSFAYLKNLPVDYLKIDGSFIRDIVSDPSDRAMVEAINTIGHTMGLA 1084

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +A+ +  E  ++ L  +G DY Q  HV  P     + +
Sbjct: 1085 TVAEFVEDEAILRALEEIGIDYAQGYHVGMPRPLAELGR 1123


>gi|297191891|ref|ZP_06909289.1| integral membrane phosphodiesterase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|297151117|gb|EDY65041.2| integral membrane phosphodiesterase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 935

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 139/743 (18%), Positives = 286/743 (38%), Gaps = 44/743 (5%)

Query: 235 DFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIA 291
           D   +S ++ L        R+    A++   +  L   L  +   R     G +  +G  
Sbjct: 190 DIVLVSMVLALHFRRSPANRSAVNTAIAGLALTVLCDALFTSPLLRESYSSGQLLDAGWF 249

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351
             ++L   + +                 +      +            L P         
Sbjct: 250 AGSLLLAYAPWVARAGEPAGPPRGTRNPVRPITSSLSA----------LTPYLAAAVCTL 299

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
             L   I  R  + ++   L G  V++ +++   ++  +L     +  +          V
Sbjct: 300 GILHNVIEGRRVDRVVV--LTGCTVVLALVVRQGIM--LLDNIALTHELAQKENHFRSLV 355

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
            GS D++            +P  A + G  +  + G        IH  D       L  F
Sbjct: 356 QGSSDVIMIAAPSGVLRYVSPAAAGVYGRDAEELVGT--ELASLIHPEDLGRVVHELRRF 413

Query: 472 VGYR---RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           +          + E R R+    +  +   +             I  + D+TE+ +    
Sbjct: 414 LAAEPSVEPTTRMECRFRSGSGDWLNVESTVSRHQG------GLIFNSRDVTERVRLQAQ 467

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +  NA  D LT +PNR  F +R+   L       +    V+ ID+D +K +ND LG   G
Sbjct: 468 LQHNAEHDPLTDLPNRALFTERVRGAL-TGRRAGDEGTAVLFIDLDGFKGVNDRLGHQAG 526

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN------SLKIADFAIAMRKSIA 642
           D++L+   RR+ + ++  D  ARL G+ F  +++ + +        ++ + A  +R  ++
Sbjct: 527 DELLIQAARRLADSVRAGDTAARLGGDEFAALIVGDGSGDRSARESQVLEIADRLRLMLS 586

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +   E+ V ASIG A +    ++ +++++NA+LAMY AK  G + VE +       
Sbjct: 587 QPYRIDGGEVRVAASIGVA-FAEPAMSPTDLMRNADLAMYRAKAAGKDRVELYAPQMQAE 645

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +   L  A+   E  L++ P++ L    I  + A  +W   +    + +EF+ +
Sbjct: 646 VVRRTELAARLRSALHEGEFALLHQPVVSLTTGRIAAVSAQARWRSAQGILFTPAEFLRV 705

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALIS 819
           +++      +  ++LE                   + + + ++ LLD  L    ++AL++
Sbjct: 706 SDDGDRGAELGRWLLEEAVGQAAE--RAGAGHRTTVSVRLPARLLLDRALPLGSIEALLT 763

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +       + +  ++S    + +     L  LR++G+ + LD FG+  + ++ L  +P D
Sbjct: 764 RHGLPSGALVIELADSDPRISFDELEQRLTALRRMGVRIALDGFGSGYAAINALRRLPVD 823

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +  L+ G  E      I   ++ +A ++    +A  +     +  L  MGC + Q 
Sbjct: 824 VLKLDRGLIEGVVESARVHKITSGLLRIAGDLGMQSVADGVDVPEQVLALRAMGCTHGQG 883

Query: 938 SHVASPLGFNSILKLLKE-RFPL 959
              + PL    + + L    +P+
Sbjct: 884 MAFSGPLDEYRLRRALARGEYPV 906


>gi|170738560|ref|YP_001767215.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168192834|gb|ACA14781.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 536

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/437 (28%), Positives = 234/437 (53%), Gaps = 11/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +       A  D LTG+ NR+  L+ +  ++  SAT   +   V++IDID++K +N
Sbjct: 90  ERDAAAAHAEAVARHDALTGLANRRLLLEAIDRLMRSSATA--VSGAVLLIDIDRFKPVN 147

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G A GD VL ++  R+  L     + ARL G+ F +++I E  S  +A  A  +  +
Sbjct: 148 DLYGHAAGDAVLCAVADRLRSLAPSQGLAARLGGDEFALLVIGETGSEALARLAEQVIAA 207

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           IA P+   + E+ V A++G    +   + +  ++  A+LAMY  K  G      F+  + 
Sbjct: 208 IARPVEWAQAELKVGATVGITLISREDVDAHGIMHAADLAMYQGKKEGRGTYRFFQSAMD 267

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R +++ +L  A+E  E+   Y P++ L ++E+VG+E L +W HP  G ++ ++F+
Sbjct: 268 LELKERALLESELRTAIETGEIEPFYQPVVALPNQELVGVEVLARWRHPTRGLLTPNQFI 327

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  MI  ++  +L +   D  SW        + + +NIA +   D  L E + A++
Sbjct: 328 AAAEETGMIAELSYRLLRQSCLDARSWPSH-----LRLAVNIAPQQFQDRWLAERILAIL 382

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T + P+R+++  +ES ++ + E +R  L  L+ +G+ + LDDFGT  S L +L  + F
Sbjct: 383 TETGFPPNRLEVEITESALVQDLEATRATLTSLQNLGVRIALDDFGTGYSSLYHLRELRF 442

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +     +++R  ++ +II +  ++  T  A+ I     ++ L+  GCD+ Q
Sbjct: 443 DKLKIDRSYVDSITMSDERAKLVDAIIKLGTSLGLTTTAEGIETAASVEWLSGQGCDFGQ 502

Query: 937 DSHVASPLGFNSILKLL 953
                +P+  ++I +LL
Sbjct: 503 GYLFGAPMPKDAIDRLL 519


>gi|222087132|ref|YP_002545667.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221724580|gb|ACM27736.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 767

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/762 (19%), Positives = 290/762 (38%), Gaps = 53/762 (6%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY----------LHWN 276
            +L  + +       +       + +        + +  I     +              
Sbjct: 27  TLLTGVFVHILAYGIVFLSTGAGIYLGFCLVLAIVFAFRIHSFRQFDALEKSVLSRADIA 86

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPM-VTASIARITLASIVLYYTYFIIYHGMKGYE 335
           RW  +      +    + +    +        A    I +    +       Y   K  +
Sbjct: 87  RWETRYVLGATAATLILGVASGYAILIVQNPLAEFICIAVTMGSMVSILGRNYGSQKAID 146

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
              +     + I +  +         +   ++   L    +   +       + +     
Sbjct: 147 LQTMAC--CLPIIVACLMSGQPYMAIVSIMLVPFGLTTRSMASNLR------EFLYKNVI 198

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRNWLP 454
            S+ I    +R   A+      ++  D     +        +L L     +     + + 
Sbjct: 199 VSREISLIADRFDTALNNMTHGLFMLDADNRILVVNRKACELLNLTNPEQLRDCDFDVVL 258

Query: 455 Y--IHINDRD-----NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +     D       +  ++  V     R   E        +  ++         ++G
Sbjct: 259 RYGVRHASIDGSLPGLIQQQIEQLVDGSLSRTLIEL------GEDLFLEFSAS--RRADG 310

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   I I  D+T + ++   IL     D LTG+PNR+ F +     L  +A   + R  
Sbjct: 311 IV---ILIFEDVTARIRAERKILHMVRFDPLTGLPNREYFAELTKEKL--AAHVGDGRIG 365

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +V+D+D +K +ND  G   GD +LV++  R+ E      + ARL G++F +   +++  
Sbjct: 366 FLVLDVDDFKHVNDFKGHVTGDRLLVAIAARLRETAGDRALCARLVGDQFVLFFPNDDGV 425

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +     A+  ++A    + +  + ++ S G+ + +SS+    E    A+LA++  K R
Sbjct: 426 EDLDGRISALHAAMAGTYEVDDHSLRISFSGGYVTMSSSEFRPEEWQIKADLALFDTKLR 485

Query: 688 --GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             GG       + +   +R  +K DL  A+E  +L+ VY P+       I   EAL +W 
Sbjct: 486 TKGGCSAFEEEMDARYIERQKLKTDLREAIEAGKLHAVYQPMFTPDGGHIDCCEALARWV 545

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G+I  + F+ IAEE+ ++  I  FML R  RD   W        + + +N++++DL
Sbjct: 546 HPEKGSIPPNVFVQIAEEMGIVSGITRFMLNRACRDCAGWPRS-----LSVSVNLSAQDL 600

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             N++   +   +  +   PSR+ L  +ES +M      R +L  LR  GI++ +DDFGT
Sbjct: 601 RGNDIVAVVTEALEASGLEPSRLHLEVTESCLMDEIATVRSILADLRAKGITIAIDDFGT 660

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S LSYL  +P D VK + S +   T       +L  I  +++ +   I+ + +     
Sbjct: 661 GFSSLSYLDSLPVDIVKIDRSFVHEITGDSRRFKLLCGIADLSRALGLKIVVEGVETPEQ 720

Query: 924 IKELTRMG-CDYIQDSHVASPLGFNSILKL---LKERFPLVK 961
           +  +   G  D IQ    + P+    + ++   L    P ++
Sbjct: 721 LALINERGLADVIQGYVFSMPVSLARVGEMIDGLDRNRPALR 762


>gi|114571527|ref|YP_758207.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
 gi|114341989|gb|ABI67269.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
          Length = 697

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 216/443 (48%), Gaps = 17/443 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + I   A+ D +T +PNR+ F       +   + +D     V+ +D+D++K++ND LGI 
Sbjct: 249 KRIHRLAYVDLVTELPNRERFRKETER-VARKSLEDGGSGAVLFLDLDRFKRVNDSLGIG 307

Query: 587 VGDDVLVSLTRRIGELLKFPDI----------LARLSGNRFGIILISENNSLKIADFAIA 636
            GD +L  + RR+ E+ +  D+          +ARL G+ F ++L +  +S   A  A  
Sbjct: 308 EGDRLLEMVGRRLSEVTRGCDMASGNTEDPSMVARLGGDEFTVLLPTIEDSADAARIANK 367

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +  +I +P  +   ++ +  S+G A +         ++++A+LAM HAK  GG+  + F 
Sbjct: 368 LVDAIRLPFEISGHQVFLGVSVGVAVFPQDGADPETLMRHADLAMAHAKRAGGSAAQFFE 427

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++    +R++++ +L  AV   +L + Y P + + D    G EAL++W HP  G +S 
Sbjct: 428 PTMNQSAFERLVLENELRDAVAQDQLVVFYQPKVLMTDGACAGAEALVRWQHPTAGLLSP 487

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AEE  +I  I  ++L    R+  +WRD+     I + +N+++     +   + +
Sbjct: 488 GAFIEAAEECGLIGEIGDWVLRAACREAAAWRDRGLE--IPVAVNVSAMQFERDGFSDSV 545

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              ++     P  ++L  +ES+ M NPER    +  LR  G++  +DDFGT  S L+YL 
Sbjct: 546 LEALAAANLPPHLLELELTESIAMENPERVIEQVQPLRDRGVNFAIDDFGTGHSSLAYLT 605

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +PFD  K + S +           ++ +I+ MAK+++   +A+ +      + L   G 
Sbjct: 606 RMPFDVFKIDQSFVRDMTTDHHARIVVETILAMAKSLKLETVAEGVETPEQHQMLRAQGA 665

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
              Q    A P+     +    E
Sbjct: 666 TLAQGFLFARPMPAGDFVAFATE 688


>gi|71278425|ref|YP_266895.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71144165|gb|AAZ24638.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 588

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 219/454 (48%), Gaps = 14/454 (3%)

Query: 512 YIGIAND-----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           Y  I +D     +  ++   E +   A  D LT + NRQ     L   ++ +  ++ +  
Sbjct: 136 YTSIVHDSLVKEVLSRQLIEEKVAFQAQHDGLTHLFNRQHINHLLGNAIEDARINNKI-G 194

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           +V+ ID++++K IND +G  VGD +L++L  R+  L      + R  G++F I+L +  +
Sbjct: 195 SVLFIDLNRFKPINDAMGHTVGDKILLTLAHRLHSLSSEHIDIGRFGGDQFTILLKNLKD 254

Query: 627 S--LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                I      + + +  P  +      +T SIG++ +     T + ++K A++AMY A
Sbjct: 255 DYQETINLLIAQINQLLTAPFVIDTNSYKLTCSIGYSLFPLQSSTVNNLIKFADIAMYEA 314

Query: 685 KHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K       + ++       +  +   +D+   +E  +  L Y         +I+G EAL+
Sbjct: 315 KRAKTQQGKQYQRVMSEKIKRRLAYVDDMKQGLEQGDFKLYYQAQYNHH-GDIIGAEALL 373

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIA 801
           +W HP  G  S + ++ IAEE  +I AI  ++LE+  RDI      +       I INI+
Sbjct: 374 RWQHPVHGKESPAVYIPIAEESDLILAIGQWVLEQACRDIKKLEQLSLPESFNKIAINIS 433

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +K L+ ++  E +   + +      R+ L  +E++++ N E S  L+  L++  I   +D
Sbjct: 434 AKQLIQHDFQEIVLNAVKQNDIPAKRLALELTENLLVENIEDSIKLIASLKENAIDCAID 493

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  IP   +K + S +T    + +  AI   II + K +   I+A+ + 
Sbjct: 494 DFGTGYSSLTYLKRIPASVLKIDRSFVTNIAQSSESAAIASMIISLGKTLNMDILAEGVE 553

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            + ++  L  +GC + Q  + + PL F+   KLL
Sbjct: 554 TQEELNCLKELGCFHYQGFYFSGPLPFDEFAKLL 587


>gi|297569019|ref|YP_003690363.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924934|gb|ADH85744.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 548

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 217/459 (47%), Gaps = 32/459 (6%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++          D LTG+PNRQ    RL   L  +    +L   +  ID+D++K++ND 
Sbjct: 78  RQADSQRKHLIHYDPLTGLPNRQLLQLRLEHALAWAKRHRSL-LAIHFIDLDRFKEVNDS 136

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD++L+   RR+  +L   D LAR  G++F ++  +     + A  A  +  ++A
Sbjct: 137 LGHQAGDELLLMAGRRLSGILGQDDTLARFGGDKFILLQKTVAGPEEAAVAAQKLLAALA 196

Query: 643 MPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
            P  +  + EI V ASIG + + +   T++++LKNAE AMYHAK  G N    +   ++ 
Sbjct: 197 TPFRVTDQNEIFVGASIGISIFPNDGQTAADLLKNAEAAMYHAKEGGRNQFHFYTGLMNI 256

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPI------------------------IRLMDEEI 735
              +R+ ++  L  A+  +EL L Y P                                +
Sbjct: 257 DALERLNLENSLRQALARNELELFYQPKIMLHARPTTADRQAAAAINTAANRDSEWHYPL 316

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG EALI+W       +    F+ +AE+  +I+ I  ++++     +  WR Q   P + 
Sbjct: 317 VGAEALIRWRRA-GELVPPGRFIPLAEKSELIEQIGNWVIDETCHQLKKWRRQ-GRPELP 374

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++++      L E + A + K       ++L  +ES++M  PE +  LL    K+G
Sbjct: 375 VAVNVSARQFRAGNLAEVIAASLQKYQVPAHLLELELTESILMEKPEEAVDLLEACTKLG 434

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
           ++++LDDFGT  S  +YL   P   +K + S +     +  A  I  SII +A  +   +
Sbjct: 435 VAVSLDDFGTGYSSFAYLSRFPISALKIDQSFVRDLGHRSEAAMIADSIIGLAHQMGIVV 494

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +A+ +   + +  L + GCD +Q    + PL      +L
Sbjct: 495 VAEGVENIVQLDHLRQRGCDQVQGYLFSPPLPAGDFTQL 533


>gi|330976481|gb|EGH76533.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 545

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/442 (24%), Positives = 214/442 (48%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGGVALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSE 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLNR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++    P  ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S   +L  +
Sbjct: 394 LIAEHNVDPRWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 454 PIALLKIDMGFVGQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSFGCNQ 513

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+ +
Sbjct: 514 VQGYLISRPLPVEELVTYLRSQ 535


>gi|27381607|ref|NP_773136.1| hypothetical protein bll6496 [Bradyrhizobium japonicum USDA 110]
 gi|27354775|dbj|BAC51761.1| bll6496 [Bradyrhizobium japonicum USDA 110]
          Length = 1137

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 127/553 (22%), Positives = 244/553 (44%), Gaps = 25/553 (4%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            R   A+      +  +D  +  V +    A I  L+   +       L  I    R+   
Sbjct: 589  RFDAALNNLSQGLCMFDADQRIVVSNARYAEIYHLSGDQIG--PGTSLAQILEYRREKGT 646

Query: 466  TILDSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               D        +  +   E R   AD +   +    R M    G +        DIT++
Sbjct: 647  YFADVAPDVYLSQNVKQLSEIREL-ADGRVVAI---ARHMMQDGGWLT----THEDITDR 698

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             ++ + I   A  D LTG+ NR  F ++L      S        +V+++D+D++K +ND 
Sbjct: 699  ARNEKRIAYLAQHDLLTGLANRAVFSEKLDDAAKRSQRH-GTTFSVLMLDLDRFKAVNDT 757

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIADFAIAMRKSI 641
            LG A GD +LV + RR+   L+  D+LARL G+ F II  +E N        A+ +   I
Sbjct: 758  LGHAAGDQLLVEVARRLSSSLRDTDVLARLGGDEFAIIQENEKNQSEGAIALALRIIGLI 817

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
              P++L    ++V  S+G A        +  +L+ A++A+Y  K  G N    F+     
Sbjct: 818  EQPVDLDGHRVSVGTSVGIAFAPEHGADAETLLQKADVALYATKSAGRNDFRIFQPEMTE 877

Query: 700  FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                +  ++ +L  A+  +E  L Y P+I      + GLE  ++W HP  G ++  +F+ 
Sbjct: 878  AADTQKSMEGELREAMARNEFELHYLPVIDARTRAMTGLECFVRWHHPSKGVLAPFQFLG 937

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            +AE+  ++  +  ++L +   D  +W        + + +N+++     + + + +   + 
Sbjct: 938  VAEQAGLMVPLGEWILRQACLDAAAWPAH-----VRVAVNMSAAQFHRSNVLDVVLCALV 992

Query: 820  KTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++  SP R++L   ++ ++  N     L + +L+ +G+ + LD+ G   S  SYL   PF
Sbjct: 993  ESGLSPERLELEIPDAALLDGNLAAHLLTVRQLKNLGVGVVLDNCGVGYSAASYLQSFPF 1052

Query: 879  DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D  K + +++   T +R   A++ S + +A  +    +AK +      + L   G D+++
Sbjct: 1053 DKFKIDRAIVKDCTTRRDCAAVIASAVALAGGLGVATVAKGVETRAQFEALQAAGVDFVE 1112

Query: 937  DSHVASPLGFNSI 949
                  P+  + I
Sbjct: 1113 GYLFGRPVPNSEI 1125



 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 97/297 (32%), Gaps = 33/297 (11%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            R+ + +  P   GG V     I       +L     ++    +  R  +A+      + 
Sbjct: 416 GRIISILRTPMADGGWVATHQDITERRRDEILLAENAAELRLINT-RFDVAINNMNQGLC 474

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGR 478
            +D  ++ V +      +  L    +           H  DR +     +D  V     +
Sbjct: 475 LFDADKNLVVSNSRYQQMYDLPDELVQPGTPLQRILQHYADRGETSSLSVDQHVQIMPTQ 534

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            Q ++ ++        ++I+ +P+ +       ++    D+TEQK+  + +   A    L
Sbjct: 535 RQQDYALKD----HRQILIQRKPLPDG-----GWVATHEDVTEQKRGEQMLAQKAA--EL 583

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI-NDVLG---IAVGDDV--L 592
                 ++   R    L+  +        + + D D+   + N          GD +   
Sbjct: 584 ------EAINMRFDAALNNLSQ------GLCMFDADQRIVVSNARYAEIYHLSGDQIGPG 631

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            SL + +    +     A ++ +    +  +     +I + A     +IA  +    
Sbjct: 632 TSLAQILEYRREKGTYFADVAPD--VYLSQNVKQLSEIRELADGRVVAIARHMMQDG 686


>gi|331018627|gb|EGH98683.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 429

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 115/414 (27%), Positives = 208/414 (50%), Gaps = 12/414 (2%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           +DRL+  + L     NLR  ++ +D+D +K IND LG  VGD VL  +  R+   ++  D
Sbjct: 1   MDRLSQQVSLLQ-HQNLRGALLFLDLDHFKHINDSLGHPVGDSVLSVIAARLEASVRQED 59

Query: 608 ILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
            +ARL G+ F +++     S      ++   A  +R  +A P+ L    + VT S+G   
Sbjct: 60  TVARLGGDEFVVLICGLEGSLEHVTHQVRVLADNLRVLLAEPMFLDGHRLQVTPSVGIVL 119

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSEL 720
                +T +++LK A++A+Y AK  G N  + F VS  +  S R+ ++ DL LA+  +E 
Sbjct: 120 IPDDGLTPADLLKRADIALYRAKDSGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEF 179

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +L +   +     +I G EAL++W HP++G ++  +F+ I EE  MI  +   +L+   +
Sbjct: 180 HLHFQAQVDCRTNQITGAEALLRWQHPEYGLLAPDQFVQILEESGMILEVGSRILDDACK 239

Query: 781 DIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                  Q         + +N++ +    ++  E ++  + +     + +KL  +E +V+
Sbjct: 240 IGGLLLSQGLVSKDRFLMGVNVSPRQFRQSDFVERVEHSLKQHHLPATMLKLEITEGIVI 299

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
            N + + L +  LR +G+   +DDFGT  S L+YL  +P DT+K + S +    S     
Sbjct: 300 QNLDDTILKMRSLRDLGVGFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDA 359

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            I+R+I+ MA+++   +IA+ +     +  L R+GC   Q    + PL      
Sbjct: 360 EIIRAIVAMAQSLNLHVIAEGVETPEQLAFLERVGCYNYQGYLFSEPLPGPEFE 413


>gi|291447960|ref|ZP_06587350.1| integral membrane phosphodiesterase [Streptomyces roseosporus NRRL
           15998]
 gi|291350907|gb|EFE77811.1| integral membrane phosphodiesterase [Streptomyces roseosporus NRRL
           15998]
          Length = 1010

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/784 (18%), Positives = 314/784 (40%), Gaps = 42/784 (5%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           +I G    LA  L + +  + + +   + A A + L Y  +D   +S ++ L      + 
Sbjct: 221 LIGGSLLTLAWSLALAHTAHMAGVQDTSVAPAALSLAYPLLDIVLVSMVLALHFRRAGVN 280

Query: 254 RACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           R+    A+++  +  L   +  +   R     G +  +G    ++L   + +     A  
Sbjct: 281 RSAVNTAIAALALTVLSDAVFTSPLLRSTYHSGQLLDAGWFAGSLLLAYAPWGARRGARR 340

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
                    +                   L P           L+  +  R  + ++   
Sbjct: 341 PARPGPPRAIASRPIAGSLAA--------LTPYLAAAVCTLGILYNVVDGRRVDRVVI-- 390

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
             G  V++ +++   ++  +L     +Q +          V GS D++            
Sbjct: 391 FTGCTVVLALVVRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPNGTLRYV 448

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRA 487
           +P  A + G  +  + G        IH  D       +  F+    +     + E R R+
Sbjct: 449 SPAAAGVYGRDAEDLVG--AELSSIIHPEDLGRVVHEVRRFLAAPPHEEPTTRIECRFRS 506

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +  +   +             +  + D+TE+ +    +  NA  D LT +PNR  F
Sbjct: 507 GAGDWLNVESTVNRHQG------GLLLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALF 560

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R+   L       +L   V+ ID+D +K++ND +G   GD++L+   RR+ E ++  D
Sbjct: 561 TARVRQALG-GRRAGDLGTAVLFIDLDGFKQVNDTIGHQAGDELLIQAGRRLQESVRAGD 619

Query: 608 ILARLSGNRFGIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             ARL G+ F  +++ +          ++ + A  +R +++ P  +   E+ V ASIG A
Sbjct: 620 TAARLGGDEFAALIMGDGTRDQGAREYQVHEIADRLRLTLSQPYRIGASEVRVAASIGVA 679

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +    IT +++++NA+LAMY AK  G + VE +             +   L  A+ + E
Sbjct: 680 -FAEPAITPTDLMRNADLAMYRAKAGGKDRVELYAPQMQADVVRRSELATRLRTALRDGE 738

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L++ P++ L    +  + A  +W   +    + +EF+ ++ +      +  ++LE   
Sbjct: 739 FALLHQPVVHLASGSVAAVAAQARWRSAQGILFTPAEFLRVSGDDDRTAELGRWLLEEAV 798

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVM 838
                     +  P+ + + +++  LLD       ++AL+++       + +  ++S   
Sbjct: 799 AQAADRARAGH--PVSVSVRLSAARLLDAAPPPGSVEALLTRHGLPSGALMIEVADSDPR 856

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            + +     L  LR++G+ + LD FG+  + ++ L  +P D +K + +L+ G  E     
Sbjct: 857 VSFDALEQRLVALRRLGVRIALDGFGSGFAAINALRRLPIDVLKLDRNLVEGVVESARLH 916

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
            I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    + + L++ 
Sbjct: 917 KITSGLLRIACDLGLQSVADGVDVPEQVLALRAMGCTHGQGMAFSGPLDEYRLRRALVRG 976

Query: 956 RFPL 959
            FP+
Sbjct: 977 EFPV 980


>gi|312882345|ref|ZP_07742088.1| hypothetical protein VIBC2010_00090 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369991|gb|EFP97500.1| hypothetical protein VIBC2010_00090 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 827

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 230/450 (51%), Gaps = 10/450 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+KK+ +     A  D LTG+ NR    ++L   +  +  +D+    ++ +D D++K 
Sbjct: 379 INEEKKNFD---FLAHHDPLTGLSNRLYASEQLEEAIRQATENDST-FLILYLDTDEFKT 434

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG A GD++L++++  + E++     +AR+ G+ F +++   +        A  + 
Sbjct: 435 INDSLGHAAGDNLLITISEVLKEIIGKSGFVARMGGDEFLVLVTDISLKEG-EVLAAQIN 493

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K++  P  + +  I V+ SIG   +         +++NA+ AMYHAK  G +    +   
Sbjct: 494 KALRRPYYIDDNLIFVSVSIGVCQFPEHGRDPETLVRNADTAMYHAKRHGRDQYRVYADK 553

Query: 699 SFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  +I+ +  L  A++N EL + + P I L  + +VG EAL++W+HPK G +  +E
Sbjct: 554 MTHEVTDLIETNIGLRQAIQNEELVVYFQPKIDLETDSVVGAEALVRWNHPKLGLLPPTE 613

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQ 815
           F+ +AE+  +I  I+ ++  ++   I  WR+       +   IN +++    ++L + +Q
Sbjct: 614 FLEVAEKTDLIIDIDKWVFTQVVELISKWRESGLDITGLVFSINFSARMFYMSDLADQLQ 673

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T   P ++ L  SE  +M + E     + +L + G  + +DDFG   S LS L +
Sbjct: 674 VILDRTGCHPKQLLLEISERDMMRDFETCVKNVAKLHERGYKIAIDDFGKGYSSLSVLKH 733

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K + S +   +       I R+++ +A+ +E ++IA+ +  +  +  L ++GC 
Sbjct: 734 LPADSIKLDRSFIEDVSSSKVDFEITRAVLKLARILEFSVIAEGVETKSHVATLRKIGCR 793

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           Y Q    A PL  ++ +K +       K +
Sbjct: 794 YAQGYAFAEPLTIDNWVKYMTLDKTGTKRS 823


>gi|330828503|ref|YP_004391455.1| sensory box/GGDEF domain/eal domain-containing protein [Aeromonas
           veronii B565]
 gi|328803639|gb|AEB48838.1| Sensory box/GGDEF domain/eal domain protein [Aeromonas veronii
           B565]
          Length = 654

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/571 (21%), Positives = 231/571 (40%), Gaps = 34/571 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F V+  +       Q +      Q   +    D++   D     +         +G  + 
Sbjct: 111 FGVVNEIAQRKSLEQTVKKQQLLQRFLLDAIPDLIRFDDHNGVLLECNQAFLDFIGQGAD 170

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G    +                   +   +G    E  +  A  Q   M I    + 
Sbjct: 171 EVLGQQLPFR------------------LAAPQGMGHGECCLLDASGQGRHMEITRVDVP 212

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G  L  + +  DIT  + +   +      D+LTG+        +L+  L  S     
Sbjct: 213 DGDGHSLGILTLGRDITGLRTTQAQLQQEQHYDSLTGLL-------KLSRFLQTSRHLGG 265

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              T++++D+  +++IND  GI + D +L  + +R+ +L+    +L R++ + F ++L  
Sbjct: 266 RSATLVLVDLHHFREINDRFGIRIADRLLSQVAKRLQQLVPPRSLLCRVAADDFSLLLPD 325

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            N    +  ++  +++ +     + +  I +   +G A        +  +L +AE A+  
Sbjct: 326 FNEP--LQGWSQHLQQQLMEHYQVEDHRIQIPVFLGLAQ--GRASDAERLLSHAEAALAQ 381

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI-KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K +             R  R  +    L LA+++++L  VY PII      + G E L 
Sbjct: 382 GKRQQQYCTLFDPELHARLKRRQLIAAQLPLAIKSAQLVAVYQPIICTRTHRLHGAELLC 441

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G IS  EF+ +AEE+ +I  +   MLE+    +  W+     P + + IN++ 
Sbjct: 442 RWPHPELGMISPDEFIPLAEEMGIIGQLGQLMLEQGCAQLAQWQTA--QPDMVLSINLSP 499

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               D  LCE + A  ++     S+++L  +E V+M N +     L  L   G  L +DD
Sbjct: 500 LQFRDPALCERVSACTARHGLKASQLELEITEGVLMENADEIETNLDNLIAAGFQLAIDD 559

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT    L+YL  +   T+K + S   G        AI+RS+I +   +   I A+ +  
Sbjct: 560 FGTGYCSLAYLPRLQVATLKLDRSFTQGLASNSATTAIVRSVIGLGHELGIRITAEGVET 619

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 LT  GCD +Q    + PL       
Sbjct: 620 PEQQLWLTEAGCDRLQGYLFSRPLPPAEFAA 650


>gi|332532491|ref|ZP_08408369.1| hypothetical protein PH505_af01060 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038134|gb|EGI74581.1| hypothetical protein PH505_af01060 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 668

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 125/565 (22%), Positives = 246/565 (43%), Gaps = 17/565 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    E+         D++                  +L  +S  + G   N    +   
Sbjct: 101 LQQSNEKFKAFTKVMPDLILILSEEGIYTDVYGTSNELLLDSSKDLIG--ENVKDLLPSK 158

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL--RYIGIAN 517
           D      ++   +     ++ +E+ +        +                    + +A 
Sbjct: 159 DAQMIMDVIKKTLSTNETQI-FEYELDVPKGSIVFEGRAAALDHYHPNSPTKRHVVWMAR 217

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI+ +KK+ + +   AF D LT +PNR+   D+L+T ++    + N+   ++ +D+D +K
Sbjct: 218 DISIKKKAEQEVHKLAFYDPLTNLPNRRMLSDKLSTCVESIKRNKNI-GALLFLDLDNFK 276

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIAD 632
           +IND LG + GD+VLV L++R+  ++K  D LAR  G+ F I+L            +   
Sbjct: 277 RINDSLGHSAGDEVLVELSKRLSAIIKGSDTLARAGGDEFIILLKHIGQDTKQATIECKA 336

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  ++++      +      V+ SIG     S    +  +LK A+ AMY +K++GGN  
Sbjct: 337 LAKEIQRAFHDKFEVGNLAFQVSCSIGICLIDSVNAQADNILKFADTAMYRSKNKGGNSS 396

Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +  +       +  ++ D+  A+ + E    + P + +   +++G EALI+W+HP+ G
Sbjct: 397 SFYDPALQTLLEKQAELETDIVRAIASDEFCAYFQPQVNMH-GDVIGAEALIRWNHPQKG 455

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNE 809
            I+++EF+ IAE+  +I+ +   +L  I   I   +          + INI+      + 
Sbjct: 456 LIAANEFIPIAEQYGLIQKLQNIVLHDICILINELKADNIIDDSFSVSINISQSQFNSSN 515

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   + + I+K      +IKL  +ES++  + + + + +  L   G   ++DDFGT  S 
Sbjct: 516 LKGELFSTINKFDIRAQQIKLEITESMLSSDVDYTIMQMKELIAAGFIFSIDDFGTGYSC 575

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL   P   +K + S +           I ++II + K++   ++A+ +        L
Sbjct: 576 LAYLSTFPVKELKIDKSFIDKILDNTVGFNIAQTIISLGKSLNLEVVAEGVETTEQYDLL 635

Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952
            +M  D +Q   +A P+      K 
Sbjct: 636 KKMNIDTMQGYLIAKPMDKECYSKW 660


>gi|304406534|ref|ZP_07388190.1| diguanylate cyclase/phosphodiesterase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344592|gb|EFM10430.1| diguanylate cyclase/phosphodiesterase [Paenibacillus
           curdlanolyticus YK9]
          Length = 861

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 224/449 (49%), Gaps = 7/449 (1%)

Query: 508 DILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +I   +     +T +     +     A+ D+LTG+PNR  F + L   ++ +   +    
Sbjct: 407 EINWLVSNFRVVTLKLSTMFKESRELAYYDSLTGLPNRLHFHEHLRQAVEQAQQSEGQEV 466

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            VM +D+D++K IND LG AVGD +L  +  R+   L+    +ARL G+ F ++L     
Sbjct: 467 YVMFVDLDRFKHINDTLGHAVGDLLLQQVAVRLSRDLEPHMFMARLGGDEFVLVL--IAE 524

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +    A  +   +  P ++   E+ VTAS+G  S   S + +  ++KNA+ AMY +K 
Sbjct: 525 EEEARALATELLADLENPFHIGGEELYVTASVGIGSSAISGLEAETIVKNADFAMYDSKA 584

Query: 687 RGGNHVESF-RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            GGN    F    +  S R+ ++ +L  AV+  +L L Y PI     E  + +EAL++W 
Sbjct: 585 IGGNGYSFFTPPKTDLSQRMRLEFELRKAVDRRQLQLHYMPIYDRGAERTISIEALLRWT 644

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP++G IS   F+ +AE   ++K I  ++     R I  W D    P + + IN++   +
Sbjct: 645 HPEYGPISPGVFIPMAESCGLLKPIGEWVAREACRQIKEWLD-NGEPVVPVAINLSPTQI 703

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             + + + ++ L+++T   P  +++  +E V   +PER    L RL++ G+ + +DDFGT
Sbjct: 704 QLHGIVDYLEELLTETGIPPELLEVEITEEVFAKHPERVIAELHRLKQRGVKVWIDDFGT 763

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L  L  +P D  K + + +      + +++I+++++ +A+     ++A+ +    +
Sbjct: 764 GYSSLGLLNRMPVDGFKIDRTFVHELDRDKDKLSIVQTMLLLAQARNWLVVAEGVETNGE 823

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
            + L   GC   Q  + +  L    + K 
Sbjct: 824 SEALKTAGCCLQQGFYYSRALPAQEMGKW 852


>gi|87124097|ref|ZP_01079947.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EALdomains)
           with PAS/PAC sensor(s) [Synechococcus sp. RS9917]
 gi|86168666|gb|EAQ69923.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &
           EALdomains) with PAS/PAC sensor(s) [Synechococcus sp.
           RS9917]
          Length = 573

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 253/577 (43%), Gaps = 19/577 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGS 444
           + +  L+  +  + +    ++  +     G    W+       +  +     + G+A  +
Sbjct: 1   MNRLALSMQFKRESLTDRLKQLLIEAEQLGMMGSWELIHASGELLWSLGTHRVFGIAP-T 59

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +      +L  +H ++R+       S V   +       RV   D Q   +  R     +
Sbjct: 60  ITPDYALFLSCVHPDERERVDQAYRSSVATGQA-YDMRHRVVTPDGQLKVIQARATTSLD 118

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G  LR +GI  DIT   ++ + +   AF D LT + NRQ+ +  LT        +   
Sbjct: 119 RQGKPLRSVGIVQDITALAETEQELARLAFTDPLTTLLNRQALMRELTR---RCGDEPGE 175

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS- 623
              ++ +D+D ++  ND  G+A GD +LV+L  R+ + L    ++ARL  + F +++ + 
Sbjct: 176 ALALINLDLDGFQAFNDSFGVAAGDRLLVALAARLRDQLPADALIARLESDEFLVVIPAA 235

Query: 624 -ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            E  +  +      +    A P+    + +  TAS+G + + +       ++++A  A+ 
Sbjct: 236 FEQMASWVDSIQALVGALNADPLQ---QSLAPTASVGASHFPTHGHDPIALVQSANTALM 292

Query: 683 HAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK R       +   +S     ++ ++ DL  A+++ + +LV+   +   D  ++G E 
Sbjct: 293 EAKRRAKQGRCLYSAAISERIHQQLSLEADLQQAIKHQDFHLVFQAQV-GRDGALLGAEV 351

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+   +    F+ +AE+   I AI  ++L+     ++ W+ +    P  + IN+
Sbjct: 352 LLRWRHPQGHLVPPGVFIPLAEQSGQIAAITDWVLDAACAQVVQWQQKNLQVP-RLAINL 410

Query: 801 ASKDL--LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           ++  L     +L +   A +++    PS  +L  +E+ ++ + E SR  L  L + G  L
Sbjct: 411 SAALLGVAHRQLDQVFLATLARYRLDPSAFELEITETALLQHLEVSRNQLIALLEAGFQL 470

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  + L  L  +P  T+K +GS +         +AI+R  I +  ++    +A+
Sbjct: 471 AIDDFGTGYASLLTLRVLPATTIKIDGSFVQRMQRDPVDLAIVRRSIQLIHDLGMVALAE 530

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  E     L  MGCD  Q      P+      + L
Sbjct: 531 GVENEQQQNALLEMGCDGFQGYLFQRPMPAEQFAEHL 567


>gi|82701469|ref|YP_411035.1| response regulator receiver/GGDEF/EAL domain-containing protein
           [Nitrosospira multiformis ATCC 25196]
 gi|82409534|gb|ABB73643.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosospira multiformis ATCC
           25196]
          Length = 980

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 225/460 (48%), Gaps = 11/460 (2%)

Query: 508 DILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +I   + +A DI+   +  K  E I   AF D +T +PNR  FLDR+   + + +   + 
Sbjct: 524 EIALLVEMAGDISFAMDHLKKEERINYLAFFDAVTELPNRALFLDRVNQRIKMVS-SGHE 582

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +V+V+DI+++  IN+  G   GD +L  L +R+ +LL   DILA LS + F I    E
Sbjct: 583 MLSVIVLDIERFSSINESFGHGAGDSLLRQLAKRLKQLLSEADILAHLSADYFAIARKHE 642

Query: 625 NNSLKIADFAIAMR-KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             S+ I      +  +    P  +  +E+ V+A  G + + S  + +  +L+NA  A+  
Sbjct: 643 EESIDIVHMLEKLLFEVQNEPFLINGQELWVSARAGASFFPSDGLDTDTLLRNAGTALKK 702

Query: 684 AKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           AKH    +   +    +   +++ ++  L  A+E  +L L Y P + L   +I GLEAL+
Sbjct: 703 AKHSSDKHLFYAPEFHARVKEKLRLEIKLRQALEQEQLMLYYQPKVDLKSGQISGLEALM 762

Query: 743 QWDHPKW-GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           +W  P+    +S   F+ + EE  MI     + L +   D   W+  +  PP  I IN++
Sbjct: 763 RWHDPESATVLSPLHFIPLLEETGMILDAGRWALSKAISDANKWKAMSLNPP-RIAINVS 821

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L   +  + +  ++S      +  +   +ESV+M + + +   L  ++++GI L +D
Sbjct: 822 PVQLRQKDFVDMVANVVSDAG-DLAAFQFEITESVIMHDIKANIEKLNLIQEMGIELAID 880

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSY+  +P + +K + + ++        ++I+  II +A ++   ++A+ + 
Sbjct: 881 DFGTGYSSLSYIAKLPVNVLKIDRAFISDMNINPDNLSIVSGIISLAHSLHLRVVAEGVE 940

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                + L  + C+ +Q    +  +    I++ L ++  L
Sbjct: 941 TAEQAELLRSLECEEMQGYLFSPAVTATKIIEFLHQKKSL 980


>gi|254284229|ref|ZP_04959197.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [gamma proteobacterium
           NOR51-B]
 gi|219680432|gb|EED36781.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [gamma proteobacterium
           NOR51-B]
          Length = 606

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 225/467 (48%), Gaps = 27/467 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K   + +   A+ D+LT +PNR+SF ++L   L      ++L   ++VID+D +K+IN
Sbjct: 136 ELKAQEDRLRYLAYFDHLTDLPNRRSFNEQLRRNLIDGHKRESLTG-LIVIDVDHFKRIN 194

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDIL--------------------ARLSGNRFGII 620
           D +G   GDD+L ++  RI + L     +                    AR  G+ F ++
Sbjct: 195 DSIGHERGDDLLRNMAVRIQDALTQIATIISDYPGAAVTADPDSLAFELARPGGDEFTVV 254

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + +  +   +AD   A+ +S+  P+ +    + +T SIG A       T   +L++A+ A
Sbjct: 255 VRNPASIEHLADIGNAIMESLNDPVEIQGHALVLTPSIGAAMAPLHGQTPELLLRHADAA 314

Query: 681 MYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G   +  +          ++ ++EDL  A++   L ++Y P I     E+ G+
Sbjct: 315 MYAAKADGRARLRVYDESLEDDAELQLQLEEDLRDALDTGGLRMMYQPQIDTRTGEMCGV 374

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP  G I   +F+ +AE   +I+ +  ++L  +  D            + + I
Sbjct: 375 EALIRWQHPTLGAIPPDQFIGVAERTGLIRPLGDWILREVDADARKSGSNFPR-SVSVSI 433

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++      +     +  +I +   + + ++L  +E VVM + E +   L +L+ +G  L
Sbjct: 434 NLSPIQFGQSNFVSHLTQIIKQLDLNYT-VELELTEGVVMTDAEHNLDKLRQLKALGFKL 492

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S LSYL + P DT+K + S +    T     I+R+I+ +   ++ T++A+ 
Sbjct: 493 AIDDFGTGYSSLSYLRHFPIDTLKIDRSFINDIGTPDGDGIVRAILGLCHALDLTVVAEG 552

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF-PLVKNT 963
           +  +     L   GC  +Q   +  P+    ++   ++ + PL+ ++
Sbjct: 553 VETKEQALFLADHGCQILQGFLLGRPMPVGDLMAASEQNYLPLITDS 599


>gi|241589848|ref|YP_002979873.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Ralstonia
           pickettii 12D]
 gi|240868560|gb|ACS66219.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Ralstonia
           pickettii 12D]
          Length = 699

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 208/443 (46%), Gaps = 9/443 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +++ + +   A  D+LT +PNR++    +   +  + T       V+ +++D +K  
Sbjct: 251 SSLREARQRLTMLASIDHLTSLPNREAIYRSIQEEIAGA-TGSGTGFHVLHVNLDSFKVF 309

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G+A+GD +L  +  ++ E      ++ RL G+ F +++    N  ++ D A  + +
Sbjct: 310 NDSYGMAIGDSLLRIVAVKLVEAAGRSAVVGRLGGDEFVLVVRD-ANMEQVLDLASNLVE 368

Query: 640 SIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           S+   I++     + VT SIG AS+      +  +LKNA+ AM  AK  GGN    +   
Sbjct: 369 SMRGGISVDNATTVRVTLSIGIASYPKDGEAAESLLKNADGAMSAAKAAGGNGFRFYGPD 428

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                + R+ I + L   VE     L + P      + I G EALI+W HP  G +   +
Sbjct: 429 ISENSTRRLQIMQALQDTVEKGGFKLHFQPKFGCDGQSIEGAEALIRWTHPDLGVVPPLD 488

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  I  +++ +  R I+ W      PP+ I +N++ + L        +  
Sbjct: 489 FIPLAERTGLISQIGNWVIGQTCRHILEWDRAGL-PPLRIAVNLSPQQLQQPGYIRTVNE 547

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +    P R+    +E+V M   E++   +   +  G  + +DDFGT  S L+YL   
Sbjct: 548 IVGQHGVDPRRLMFEITETVAMEVAEQTTANIREFQTSGFDIAIDDFGTGYSSLAYLQRF 607

Query: 877 PFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
               +K +     G  E   +  AI+ +II +A ++   ++A+ +  +  +++L  M CD
Sbjct: 608 RAKQLKIDRFFTRGLDEHGDEGYAIVSAIIGLAHSLRMQVVAEGVETQSQLQKLRDMSCD 667

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            +Q   +  P+G       + E+
Sbjct: 668 QVQGFLLGKPMGAEDFAAFVLEQ 690


>gi|87199128|ref|YP_496385.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134809|gb|ABD25551.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 764

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 111/453 (24%), Positives = 198/453 (43%), Gaps = 11/453 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS-ATDDNLR 565
           G  +    +    +E   S      NA  D ++G+PNR  F+ RL   L+      +   
Sbjct: 305 GGAIIVRRMRRTTSELIASEAQAQHNALHDAMSGLPNRAHFMQRLRQELNACVERRELGD 364

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V  +DID++K +ND LG  VGD+++  +  R+   L   D L+R  G+ F ++  +  
Sbjct: 365 VFVAYVDIDRFKIVNDTLGHHVGDELVRQVALRLRRSLPPGDFLSRFGGDEFVLMRRTTG 424

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                      +      P  +    + V+ S G +          E+L+ A++A+Y AK
Sbjct: 425 GRAAADMLGKQIMALTREPFVISSNNLEVSLSCGISWGPEQSEDPGELLRRADIALYRAK 484

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG      F      S ++   ++ +L  A+   EL L Y PI+      I G EAL++
Sbjct: 485 QRGRARYRRFTRDMDASVKLRREMEVELRRAIVRDELTLAYQPIVHAGSGAIEGFEALLR 544

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G+I    F+ +AE+  M+  +  ++L R+  +   W      P   I +N++  
Sbjct: 545 WPHPERGSIRPGLFVPVAEQAGMMVPLGSWVLRRVFTESRQW------PDCDISVNLSPL 598

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            ++ ++  + M  L+ +T   P R  L  +E V++   +    +L  L   G  + LDDF
Sbjct: 599 QIMSSDFLQAMDELVRETGADPRRFILEVTEGVMLDRSDHVLDVLKGLNYRGFRIALDDF 658

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   S LSYL    FD +K + S +          +IL++I+ +   +   ++A+ +   
Sbjct: 659 GIGYSSLSYLRSFQFDRIKIDRSFVQNIEGDLDAHSILKAIVSLGHTLRMKVVAEGVETP 718

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    +   GC  IQ       L  +    L++
Sbjct: 719 MQRALVQAAGCQMIQGHLFWEALPVDEAKALVR 751


>gi|296169849|ref|ZP_06851463.1| GGDEF protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895526|gb|EFG75226.1| GGDEF protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 625

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 107/458 (23%), Positives = 198/458 (43%), Gaps = 8/458 (1%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +    +     +   +  +  + E +   A  D+LTG+ NR++ +  LT  L        
Sbjct: 155 DEINTLEAVAALFAQVQARIAAEEKLRYLAEHDDLTGLYNRRALVAHLTERLAAGRPGP- 213

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               VM +D+D+ K IND LG   GD  +    +RI  +      +ARL G+ F ++   
Sbjct: 214 --VAVMYLDLDRLKPINDYLGHTAGDWFIRVFAQRIR-ICAPNSTIARLGGDEFVVVPDQ 270

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  +   +   + +    I+ T SIG A     +   +++L++A+ A   
Sbjct: 271 SMAPDAAESLARRLSAMLCERLAIGGHVISRTVSIGLAVGVPGRDNCTDLLRHADEAALT 330

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GGN +                I+  L   +++  L L Y P + L    IVG EAL
Sbjct: 331 AKRAGGNQIAVSTDDMSLKRAFRNDIELHLQGDIDSDALMLHYLPEVDLSTGAIVGAEAL 390

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP WG +    F+ IAE   +   +  +++     D   W+         + IN++
Sbjct: 391 VRWRHPVWGLLLPDSFIGIAESTNLAMELGRWVMRSACADFSRWQAHGVGRGAVMRINVS 450

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L+       +   I +       + L  +E  V+ + + +R  L  L+++G+ L +D
Sbjct: 451 PIQLITRGFVRDVAGTIEEFGIDAGSVCLEITERAVVHDIDTTRKTLAELKEVGVQLAID 510

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  ++LS+L  +P D +K +   +         +AI+R+II +A+     ++A+ + 
Sbjct: 511 DFGTGYAVLSHLKSLPVDMLKIDTGFVRDLGNDAGDLAIVRAIIGLAEAFGLEVVAEGVE 570

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                  L + GC   Q   ++ P+  +++  LL  R+
Sbjct: 571 TPDAAMILIQHGCRRAQGFLLSRPVPADAMEALLSTRW 608


>gi|283833287|ref|ZP_06353028.1| sensory box/GGDEF family protein [Citrobacter youngae ATCC 29220]
 gi|291070924|gb|EFE09033.1| sensory box/GGDEF family protein [Citrobacter youngae ATCC 29220]
          Length = 642

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 110/424 (25%), Positives = 202/424 (47%), Gaps = 12/424 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  + + D+LT + NRQ F   L   ++++  +++   TVM+ D+D++K++ND  G 
Sbjct: 218 NAKLEYDVYHDSLTDMNNRQFFWGNLNQKIEIAEKNND-SVTVMLFDLDRFKEVNDTYGH 276

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L  ++ R+  +    D L RL G+ F  +      S  +   A  +   I+ P 
Sbjct: 277 DAGDILLRQISDRLTAMSLTSDTLYRLGGDEFAFLSSGLTESQAV-SLAQKICDFISQPY 335

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSD 703
            +    I +T  +G    + ++  S  + K A+LA+Y AK+   G   V    +     +
Sbjct: 336 TIYNTVINITTCVGIV-ISETERRSDYLYKFADLALYEAKNEGSGKIKVFRQWMLEKLQE 394

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++ D+ +A+ N E  + Y PI+     +I   EALI+W HP  G +S   F+ +AE+
Sbjct: 395 SRTLEHDMAMALVNKEFVVYYQPIVDSFSRKIYSYEALIRWIHPLKGLLSPDSFIPVAEK 454

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI A+   +LE    +  SW       P  I +N++   L        +  ++ +T  
Sbjct: 455 TGMINAMGKSVLEIACMEAASWA-----VPAKISVNVSPVQLSSKAFAGIVLTILKETGL 509

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R++L  +ES +          L +LR +G+ +++DDFGT  S LS L  + FD +K 
Sbjct: 510 PAERLELEVTESSLFTESNTPMNTLNKLRALGVKISIDDFGTGYSSLSRLSKLAFDKIKI 569

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +   +  E  + I++ I  MAK++    +A+ +  +  +++L  +GCD+ Q     
Sbjct: 570 DKSFVHSISTQEDALNIIKLITGMAKSLNMKAVAEGVETQEQLEKLQALGCDFAQGYLFG 629

Query: 942 SPLG 945
            P  
Sbjct: 630 KPQP 633


>gi|212635186|ref|YP_002311711.1| PAS:GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556670|gb|ACJ29124.1| PAS:GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 724

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 122/581 (20%), Positives = 243/581 (41%), Gaps = 38/581 (6%)

Query: 391 LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           LA    ++  +   ER  L   A   S  I+   ++    +         +  +    + 
Sbjct: 160 LALTLATKYAYDKDERLKLFLSATEQSDQIMMVVNLASLTIEYVNNAHFVLTQIPKDQII 219

Query: 447 GPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G     L +     +  +       +         + E ++   D   +W+ + ++   +
Sbjct: 220 GRPVQELEFFKQFPDKAEIVLAKARA-----GESSEEEVKLVRRDGTDYWVRLSVKRFIS 274

Query: 505 SNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             G+   +  I  D  TEQ +    +   A++  LTG+ NR  F   L            
Sbjct: 275 ERGN--HFALINADNCTEQHQHQSELERLAWRCGLTGLYNRTHFGRVLDRA--------- 323

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI--LARLSGNRFGIIL 621
               +++ID+  +K+ ND  G A GD +LV + RRI        I  +AR+  + F +++
Sbjct: 324 KEGHLVLIDLRGFKRFNDTYGHANGDLMLVEVARRIRHFADINHIEEIARIGSDEFAVLI 383

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM---LKNAE 678
                   I      +  ++ +P+++   +I    +I          +  ++   L  A+
Sbjct: 384 SDSREVDVITPLIERLYNNLELPVSIGTEQIEPKPAIAAV----DIASIEQLFPALTCAD 439

Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+ +AK++ GN ++ F  +  +   D   I+ DL +A++  +  L Y P+  L  +  +
Sbjct: 440 IALQYAKNKQGNAIQVFNSALLNAFKDDAQIERDLAVAIKGRQFELYYQPLKDLKKQAYI 499

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HPK G +    F+ IAE+  +I  I  ++LE   + +  W+       I +
Sbjct: 500 GAEALIRWHHPKKGVLYPGAFIDIAEQTGLITDIGSWVLEAACKQLNLWQH--RQIDISM 557

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++      L E +  LI +    P  + L  +E+ +M +   +  L   L ++G+
Sbjct: 558 HVNVSARQFFSGTLFEQVWELIGRYRLKPHSLILEITETELMEDIRSATNLCNELAELGV 617

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  +  ++ 
Sbjct: 618 GLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLSVSHESREIVSAIIAMASALNISLT 677

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +  +     L    C   Q    +  L  +   + L+E
Sbjct: 678 AEGVETKEQELFLADHLCHQAQGFLYSPALRVSEFGEFLEE 718


>gi|160902014|ref|YP_001567595.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Petrotoga mobilis SJ95]
 gi|160359658|gb|ABX31272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Petrotoga mobilis SJ95]
          Length = 684

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/552 (20%), Positives = 244/552 (44%), Gaps = 12/552 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRT 466
              +  S   +   D     V        + G     + G     W   +H  D+  +  
Sbjct: 138 KEVIDNSPQAIVITDKNNKVVRVNKAFLKMTGYTLDEVIGKDPHFWASNMH--DKSFYEQ 195

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           +        +G        R  + +  ++      +   N +++ Y+ I  DIT + K  
Sbjct: 196 MWQELKS--KGFWSGRIIDRKKNGEVIFLYSNFFEIKGYNNEVIGYMAINTDITNRVKKE 253

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E I      D+LTG+PN ++ L+R+  IL         +  +++++I++  ++ D  G+ 
Sbjct: 254 EEITRVLKHDSLTGLPNSKNLLERIEEILQ--KNTQENKLALLIVEIEELHELIDFYGLE 311

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             + V+  + ++I E++     ++ +S + F  +L S  +  ++  FA  +  +++ P  
Sbjct: 312 TMNHVIKDVAKKIIEIVDKKYFVSVISKHEFA-LLGSFEDVDELEKFAANLLNNLSKPFQ 370

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +    I +   IG +++        +++  A++A+  ++ +   +  S  +S        
Sbjct: 371 IFGERIFLKMKIGVSNYPVDSTNPEDLINQAKIALKDSEKK-TINFYSPELSKIFGFEKK 429

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++++ LA+EN  L + + P I      I+G EALI+        +S +EF+ IA++  +
Sbjct: 430 VEDEINLALENKGLLMYFQPQIDTNSMNIIGAEALIRLQKENGSILSPNEFLGIAKKNAL 489

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I+ F+LE   +      +      + I  N++            +++++ K   +PS
Sbjct: 490 MDRIDQFVLEETIKSSGVINESL-NKNVRIFFNVSKSFFERENFLYNIESMLHKYNLNPS 548

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + +  +E + + +   ++  +  L++IG+ + LDDFGT  S LSYL  +  D +K + S
Sbjct: 549 YLGIELTEDLFIEDFYSAQKKIKALKEIGLKIALDDFGTGFSSLSYLNKLDIDKIKIDKS 608

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      E    ++ SII M+K++   +IA+ +  E  +  L   GC  +Q  + + PL
Sbjct: 609 FIDNILHDETSQRLVSSIISMSKSLGFEVIAEGVESEEQLLFLQEEGCYEVQGYYFSKPL 668

Query: 945 GFNSILKLLKER 956
            F+     LK+ 
Sbjct: 669 PFDQFKLFLKKE 680


>gi|74318596|ref|YP_316336.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74058091|gb|AAZ98531.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 702

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 217/436 (49%), Gaps = 7/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +      D+LTG+PNR +F ++L   L+ +  D      V+++D+D  + +ND L
Sbjct: 265 RPFRRMRNMLTHDDLTGLPNRTAFNEQLNLSLERARRD-GTSCAVLLLDLDHLQNVNDTL 323

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +LV+   RI E L     LAR SG+ F I+L +             + +++  
Sbjct: 324 GHEQGDMLLVAAAARIRERLGDAGFLARFSGDEFVILLDN-AEVEHARGAGEGLLRAMEQ 382

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             ++    + ++AS+G  ++ +   + S +++ A+LA++ AK  G N +  F        
Sbjct: 383 EFDIGTDRLAISASVGIVTYPADGESGSVLMRYADLALHRAKVGGRNGLVVFSRDLAEVV 442

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I+  L  A++ +EL L Y P   +    + G EAL++W  PK G +   EF+ IA
Sbjct: 443 ERRVAIEAHLKNALDRNELSLAYQPKREIGSGRLTGWEALLRWQSPKLGMVGPQEFIPIA 502

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L      + +W+D        I +N++++     +L E + A +   
Sbjct: 503 EQTGLIVPIGQWVLRNACLQLRAWKDLGLEAG-NIAVNLSTRQFRQKDLAEQIAAALEDA 561

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  ++L  +ES++M N   +  +L RL ++GI + +DDFGT  S LSYL   P   +
Sbjct: 562 GLAPGDLELELTESLLMDNLASAAEVLARLEQLGIRIAIDDFGTGYSSLSYLKTFPIHCL 621

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      E   AI+R+II +A+++  T++A+ +  E  +  L    CD  Q   
Sbjct: 622 KIDRSFIQDIPADENDTAIVRTIIALARSLGLTVVAEGVETEAQLDYLRANQCDEGQGYL 681

Query: 940 VASPLGFNSILKLLKE 955
           ++ PL  ++  +L++ 
Sbjct: 682 LSRPLDPDACTRLMRA 697


>gi|332141762|ref|YP_004427500.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551784|gb|AEA98502.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 630

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 216/459 (47%), Gaps = 14/459 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNR----QSFLDRLTTILDLSATDDNLRPT 567
              +  + T+ +++   I   A  D LT +PNR    + F ++L       + +  L+  
Sbjct: 178 MASLHREYTKVEQNRAHIQHLAHHDPLTNLPNRVMGERLFNEKLRE-----SEESGLQLA 232

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+ ID+D +K +ND LG A GD  L  +++ I + L   + L R  G+ F ++       
Sbjct: 233 VLFIDLDNFKPVNDALGHAAGDRFLQKISQTITDNLSANECLIRFGGDEFIVLAAQIKTR 292

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +I +    + +  +    +L+ +I V+ SIG A      +   ++ + A++AMY AK  
Sbjct: 293 SQIENLCQNLIQWCSSEFEVLQTKIVVSGSIGVAQAPYDGVKFKQLCRKADIAMYEAKRN 352

Query: 688 GGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N  E +  R      ++  + + L  AV+ + L + Y P+I L    I  LEAL++W 
Sbjct: 353 GRNRFEFYDVRFDEESDEKFSLIQRLRPAVQANALAVYYQPLIDLKTGNICALEALLRWP 412

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 I    F+ +AE   +I  +  ++L +        + Q     + I +N++    
Sbjct: 413 QEDGSMIFPDRFIPLAESSGLIDTLGAWVLNQACMFCAK-QQQNGNSELSIAVNLSFAQF 471

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D  L + ++  +  +  +P  ++L  +ES++  +       L +++ +G++  +DDFGT
Sbjct: 472 KDGNLPQIVKGALETSQLAPEHLELELTESILADDNGNVIQQLEQIKSLGVTFAIDDFGT 531

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL       +K +   +      EK + ++ +II +A+++    +A+ I  E  
Sbjct: 532 GYSNLNYLRTFSAQKLKIDRIFINTLGFDEKDVPLVTAIISIAESLGMATVAEGIENEAA 591

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +K++T MGCD  Q  + + P+    I +L++ + P  + 
Sbjct: 592 LKKITEMGCDIGQGYYWSKPVPAEQIERLIEAQSPTNQR 630


>gi|149911857|ref|ZP_01900458.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149805062|gb|EDM65087.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 633

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 127/436 (29%), Positives = 219/436 (50%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D+LTG+ NR  F + L   +  S  + N R  V +ID++++K+IND L
Sbjct: 190 RESAINRKQALHDSLTGLANRHFFQNSLEKTIAHSRRN-NSRTAVHMIDMNEFKEINDRL 248

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +L  +  R+ + +   D++ARL G+ FGII  +  +S +    A  + + I  
Sbjct: 249 GHAVGDALLQEVASRLTQSVCLSDVVARLGGDEFGIIQKNITSSEECVQLAQHIHEQINC 308

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
            +N+    +    SIG + +        ++L NA+ AMY AK+    +   F      S 
Sbjct: 309 EMNVHGYRLYPNVSIGISVFPDDAEHPDKLLNNADTAMYCAKNNDDVYYRLFEQEMNDSV 368

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               ++ E L  A+++ ++  VY PII L  + IV +EAL++W H ++G IS  E + IA
Sbjct: 369 LRYRILAESLQTALDHDQIQQVYQPIICLKTKRIVAVEALLRWHHEQYGYISPLEVVSIA 428

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  + + +N ++L +     +SWR     P I + +NI+       +L   +   +S T
Sbjct: 429 EEAGLAEKLNEWVLLKACSQNMSWRKAGL-PLIQVSVNISPAMYTRYDLVGVVSRTLSMT 487

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                ++ +  +E   M + E S  +L +LR++G+ L LDDFGT  S LS+L  +PF  +
Sbjct: 488 GLPADQLIIEVTEDTTMQDIESSPDILQKLRRLGVELALDDFGTGYSSLSHLKKMPFQKL 547

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +       K ++ +R+II +A  +   ++A+ I      ++L   GC+Y Q   
Sbjct: 548 KIDKVFIQELNNAPKDMSFIRTIINLAHGLGMQVVAEGIEVIEHYEDLYLEGCEYGQGYL 607

Query: 940 VASPLGFNSILKLLKE 955
              P   + I  +L+E
Sbjct: 608 FYKPAPSHEIECILQE 623


>gi|330973343|gb|EGH73409.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 683

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 211/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  IL+ +    + R  V+ + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILEDAGRQQH-RVAVLCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 298 QFSYQSGDQLLLALADRLRAHSVLLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPRNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I  I  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGTIIVIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLPGRELLAYLKQ 674


>gi|171060842|ref|YP_001793191.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Leptothrix
            cholodnii SP-6]
 gi|170778287|gb|ACB36426.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptothrix cholodnii SP-6]
          Length = 1083

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 214/439 (48%), Gaps = 6/439 (1%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E     E ++  A+ D LTG+ N   F +RL   ++ +A     +  V ++D+ ++K IN
Sbjct: 645  EHIAQQERLVHLAYYDLLTGLANSTLFHERLERHVE-AACAVRQKVAVALVDLVRFKMIN 703

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMRK 639
            D LG   GD +L  +  R+ + +     +AR+S +RF ++         +A  FA    +
Sbjct: 704  DTLGRHAGDALLKRVAERLLDCVGDHAQIARVSADRFAVVFADVRAEADLARVFATQYTE 763

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVS 698
               +P  +  +++ V+A +G A +      +  + +NAE A+ +AK         + R+S
Sbjct: 764  CFGLPFTIDSQDLLVSAKVGIALYPDDGGNAETLFRNAEAAVKNAKSAADTVLFYNPRMS 823

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  ++ + I+  L  A+E  +  L Y P + L    IV +EAL++W  P+ G +   +F+
Sbjct: 824  ATVAETLAIENRLRQALEQGQFVLHYQPKVDLDSRRIVSVEALLRWQSPELGLVPPLKFI 883

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             + EE   I A+  + L   ARD   WR+     P  I +N+++  L  ++    +   +
Sbjct: 884  PLLEETGQILAVGDWALRCAARDHKHWRELGLPAP-RIAVNVSAIQLHRDDFVAALALAL 942

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +    P+ I +  +E++VM + E S   L  LR +G+ + +DDFGT  S L+YL  +P 
Sbjct: 943  QEEGGQPAGIDIEITETIVMQDVEASVAKLHALRAMGVDVAIDDFGTGYSSLAYLSRLPV 1002

Query: 879  DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
              +K + + +         + ++ ++I +A ++   +IA+ +  E   K L  + CD +Q
Sbjct: 1003 QLLKIDRAFVDTMLSDPNNMILVSTMISLAHSLRMKVIAEGVETEEQAKILQLLRCDQMQ 1062

Query: 937  DSHVASPLGFNSILKLLKE 955
               V+ P+    I  +L+ 
Sbjct: 1063 GYLVSRPVPREQITAMLQA 1081



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 18/182 (9%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATG-------YFSQGIFSDGERQSLAVLGSGDIV 418
           ++  A   G +     +   V +H+                +     R +  V  + D +
Sbjct: 310 LVTHAAQAGRIFENGSLYARVQRHLADLRVEIAERQRGEAQLRQSEARLAGLVESAMDGI 369

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
              D     V   P  A + G  +  M G     L  +   D            G   GR
Sbjct: 370 VAVDNALRIVLFNPAAAQMFGYRTAEMLGQP---LDRLLPEDHRGTHDSAVRAFGSGGGR 426

Query: 479 LQ------YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +                +   +   I  ++ ++GD L  + I  DIT + ++ + I   
Sbjct: 427 PRSMGGVARTVTGLRRSGEAFPIDASISMIA-TDGDPLYVV-ILRDITARVQAEDHIRRL 484

Query: 533 AF 534
           A 
Sbjct: 485 AR 486


>gi|220923552|ref|YP_002498854.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
 gi|219948159|gb|ACL58551.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
          Length = 526

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 227/437 (51%), Gaps = 11/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +       A  D LTG+ NR+  L+ +  +L  +     +   V++IDID++K +N
Sbjct: 80  ERDMAAAHAEAVARHDALTGLANRRLLLEAIDKLL--AGDHSPVSGAVLLIDIDRFKPVN 137

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G A GD VL ++  R+  L     + ARL G+ F +++ +E  S  +A  A  +  S
Sbjct: 138 DLYGHAAGDAVLCAIADRLRSLAPSQGLAARLGGDEFALLVRAELGSEALARLAEQVIAS 197

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           IA P+   + E+ V A+IG    +   + +  ++  A+LAMY  K  G      F+  + 
Sbjct: 198 IARPVEWAQAELKVGATIGITLISRDDLDAHAIMHAADLAMYQGKKEGRGTYRFFQSAMD 257

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R  ++ +L  A+E  ++   Y P++ L  +++VG+E L +W HP  G ++  +F+
Sbjct: 258 LELKERAQLESELRAAIEGGQIEPFYQPVVSLPHQDLVGVEVLARWRHPIRGLLTPDQFI 317

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  MI  ++  +L +   D   W        + + +NIA +   D  L E + A++
Sbjct: 318 AAAEETGMIAELSCRLLRQACLDAREWPSH-----LRLAVNIAPQQFQDRWLAERILAIL 372

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T + P+R+++  +E+ ++ + E +R  L  L+ +G+ + LDDFGT  S L +L  + F
Sbjct: 373 TETGFPPNRLEVEITETALVQDLEATRATLTSLQNLGVRIALDDFGTGYSSLYHLRELRF 432

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +     +E+R  ++ +II +  ++  T  A+ I     ++ L+  GCDY Q
Sbjct: 433 DKLKIDRSYVDSITMSEERAKLVDAIIKLGTSLGLTTTAEGIETAASVEWLSGQGCDYGQ 492

Query: 937 DSHVASPLGFNSILKLL 953
                +P+   +I ++L
Sbjct: 493 GYLFGAPMPKEAIDRIL 509


>gi|332991641|gb|AEF01696.1| sensory box-containing diguanylate cyclase [Alteromonas sp. SN2]
          Length = 701

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 124/547 (22%), Positives = 240/547 (43%), Gaps = 25/547 (4%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V   D  R+ V        +L  +  S           +   D           +  +R
Sbjct: 171 GVVILDKNRETVLDNKSARLLLSCSRAS--NSSDRLEHLL--EDVS-VPDTFLPTLIEKR 225

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
              Q E   + ++N   W+ + I P+   + ++  ++ +  DI+  +   E +L     D
Sbjct: 226 AAWQGELYWQPSENYEVWLQVTIHPVI-QDSELTHWVYLLTDISHIRNKEESVLSATGMD 284

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           +LT I NR  F   +  ++      ++++  + +IDI ++KKIN+ LG   GD++L S  
Sbjct: 285 SLTKIANRNFFNSYVQKLV-----QEDVKFALFIIDIREFKKINEKLGYHSGDEILKSFA 339

Query: 597 RRIGELLKFPDILARLSGNRFGII-----LISENNSLKIADFAIAMRKSIAMPINLLERE 651
            R+   +     +AR+  N F I+         N      D    +  +     +L   E
Sbjct: 340 SRLQGFVGNSGFIARMGSNEFSIVKRTDTFSGVNTLDYAQDMKKKLVNTYT---SLHGAE 396

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKE 709
             +  +IG A +       + +L++A++A+  AK +G N +  +   +         ++ 
Sbjct: 397 SNLGINIGIAGYPQHGEQGNILLRHADIALQIAKFQGKNVILEYSEMLQRQHKSMSELES 456

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++N++L L   PI+ L   +IV  EAL +W       I    F+ +AE   +I  
Sbjct: 457 KLRTAIQNNQLALFLQPIVDLQTGKIVKCEALARWKTEDGSYIPPDVFIPLAERTELIFP 516

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++E     I    +      I + INI+ + + D  L   +Q+ + +    P  + 
Sbjct: 517 LGEWLVEEACNAIDKLTEA--NLDIRLAINISGRQVTDLVLLHQIQSSLKRRAIDPRHLS 574

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV + + +   +LL  LR +GI++++DDFGT  S L YL  +P D +K + S ++
Sbjct: 575 IELTESVFIDSLDTVSVLLNELRAMGITISIDDFGTGFSSLVYLKKLPIDELKIDRSFVS 634

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI+++I+ +AKN+  +IIA+ +  +     L    C Y Q  +   P+  +
Sbjct: 635 DLEENTDDQAIIQAILGLAKNLNISIIAEGVETQEQQTFLVDNACTYAQGYYFDRPMSIS 694

Query: 948 SILKLLK 954
             ++ L+
Sbjct: 695 DFVEKLR 701


>gi|163761094|ref|ZP_02168171.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Hoeflea phototrophica DFL-43]
 gi|162281645|gb|EDQ31939.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Hoeflea phototrophica DFL-43]
          Length = 689

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/474 (22%), Positives = 215/474 (45%), Gaps = 8/474 (1%)

Query: 493 HWMIIRIRPMSNSNGDILRYIGIA-NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             + +    + N  GD+ R +       TE+++  + +   A+ D LTG+PN+++    L
Sbjct: 216 RDVRVSDTGLGNEIGDMARAVETLARFETERRELQDQLGQLAYTDQLTGLPNKEALHQTL 275

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
           + ++  ++  +     ++V D+D++K IND LG   GD++L S+  R+   +    ++ R
Sbjct: 276 SKVVQRASARNR-ECGLIVFDLDRFKTINDTLGDISGDEILKSVATRLKRAVGRRGVVGR 334

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            SG+ F +++     S  +A     +R  +  PI++    + +  S+G A          
Sbjct: 335 KSGDEFFVVIPDLVKSGGLASLVARIRDKVVGPIDVAGTSVEIAISVGHAISPVDTADER 394

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +++ A++A++ AK+ GGN V ++          R   +  +   +   E    Y   + 
Sbjct: 395 CLVRFADMALHQAKNSGGNSVCAYSPDMSEAVETRFSTEAMINDGLRQGEFLPYYQAKVD 454

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L   +++G EAL +W  P+ G +S ++F+ +AEE   I  I   ML           +  
Sbjct: 455 LASGDVIGAEALCRWKRPETGLVSPTDFIPLAEETGQIVPIGNLMLREACA-FAVECNSG 513

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              P  + +N++ + L+  +    +Q  + +T   P  + L  +ES+++ +       L 
Sbjct: 514 RTTPFVVAVNVSPRQLMYGQFLRNLQQSLEETGCEPGWVSLEITESLLITDDGAVMETLN 573

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            +  +GI + +DDFGT  S L YL   P   +K + S +       ++  ++R+I+ MA 
Sbjct: 574 AIAGLGIEIAIDDFGTGYSALGYLTRFPISCLKIDQSFVRRIVDDPQQEILVRAILTMAH 633

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +   ++A+ I  +     L  M C+  Q      P      L  L +  PL+K
Sbjct: 634 GLGMKVVAEGIESQRVADMLHAMKCEIGQGYLWHKPSPAKDFLAGLAKH-PLMK 686


>gi|221633535|ref|YP_002522761.1| c-di-GMP phosphodiesterase A [Thermomicrobium roseum DSM 5159]
 gi|221157037|gb|ACM06164.1| c-di-GMP phosphodiesterase A [Thermomicrobium roseum DSM 5159]
          Length = 1008

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/616 (23%), Positives = 260/616 (42%), Gaps = 19/616 (3%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
             L+ +  +     I   L        L G   L +  +   +    +      +     
Sbjct: 398 RSLLAVPLLAAGRLIGCLLAAQQRDERLWGEEELDLFTLVSQLYAASIQQRRAERAEAQH 457

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
                  VL + D +   D        +P   T+LGLA   + G     L          
Sbjct: 458 HAWLRATVLAAPDALLVLDANGIVRFASPAARTVLGLAPDQLVGRPLADLTTT-PERVA- 515

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               LD     R  R++ +F    A      + +    +  S+  I   +  A D+TE+K
Sbjct: 516 -SWALDGLRPERANRIEVQF----AHQPTRTVELSGVDLR-SDRHIAGIVLSARDVTERK 569

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A +D LTG+ +R  FL+ L  +L  +  +      ++  D++++  +ND L
Sbjct: 570 RAEQLLRERATRDQLTGLLSRFGFLEVLEALLHTTTAE---TIGILCCDLERFSALNDAL 626

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
               GD +L ++  RI  +       ARL  +RF + L    +   +   A  +   ++ 
Sbjct: 627 SWEAGDAILRAVAERIRRVTGALA-AARLEADRFAVALT-APDRTTLVRLAEELLHELSG 684

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
              +   E+      G A      I ++  L+ AE+A    K  G   +  F        
Sbjct: 685 WYEVGRDEVYARMRGGLACV-EDGIDATTALRRAEIAFQVGKRAGQERLSVFDPVLYQAS 743

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R  ++ DL  A+E  EL + Y P+I +    +  LEAL++W HP  G IS + F+ +A
Sbjct: 744 IERQFLERDLRRALEQGELQIHYQPVIAVSSGRLTSLEALVRWHHPDRGPISPAVFVPLA 803

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  ++L +  R + +W      P + I +N++  D L  ++ + +  ++  T
Sbjct: 804 ETTGLISQLTQWVLLQACRQLWAWSRAGLAPELSISVNLSPTDFLHLDVPQLVDDILQVT 863

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R+ L  +ES ++ +P  SR  L RLR +GI++ +DDFG   S L YL  +P   +
Sbjct: 864 GLEPRRLTLELTESAML-DPAVSRERLERLRALGIAVLIDDFGAGYSSLGYLKQLPVSGL 922

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + +L+          A++RSI+ +A  +E ++ A+ I     +  L  +GC Y Q   
Sbjct: 923 KIDRTLVADIDHDPASTAVVRSILELAGALELSVTAEGIESARQLAVLRELGCHYAQGFF 982

Query: 940 VASPLGFNSILKLLKE 955
           V  P   N+I  LL+ 
Sbjct: 983 VGRPAPPNAIHHLLRR 998



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 5/168 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW--DWDIVRDRVTTTPDIATIL 438
           ++ ++ +  +    + S    +   R    V     +V+  + D    ++  +P    +L
Sbjct: 129 ILLWSTLHDLSDIVHRSPEFETLAHRYQTLVENLPAVVYLEEADPPHRKIYVSPAAERLL 188

Query: 439 GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G A+  +      W    +   DR                 L+  +R R  D +  W+  
Sbjct: 189 GWAAHELQVDRATWYERFVAPEDRAWALAE-RERNDRTGEALRLVYRFRTGDGRTVWLRD 247

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGIPNR 544
               + +  G      G+  D+T QK+         AF + L GI +R
Sbjct: 248 EAVLIRDRLGHPWARHGLLTDVTSQKRLEARLQRELAFHNVLLGIASR 295



 Score = 38.0 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 8/127 (6%)

Query: 410 AVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           A+  S +     D      V          G   G +     + +  +        R  L
Sbjct: 35  ALWNSSEPQLLIDPQDGRIVDANDAAVRFYGWTYGVLCSFTIDRINTLPP---AEIRARL 91

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                  R R  +  R   AD +   + +   P+    G+ +      +D+++       
Sbjct: 92  AEATQRPRTRFVFPHRF--ADGRVRSVEVITGPVR--VGERILLWSTLHDLSDIVHRSPE 147

Query: 529 ILCNAFQ 535
               A +
Sbjct: 148 FETLAHR 154


>gi|167035997|ref|YP_001671228.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Pseudomonas
           putida GB-1]
 gi|166862485|gb|ABZ00893.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudomonas putida GB-1]
          Length = 708

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 245/574 (42%), Gaps = 14/574 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
              +          Q +  + E         +  + + +   D         P I+ +L 
Sbjct: 129 VQALLDQQRNRRMLQRLSRELEAARAFNASILENAAEGILVVDAEGTISFANPAISRLLS 188

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G     L  +             +++  R+    ++ ++R    +   + +  
Sbjct: 189 SPVQQLQGAHLLDLMQLASASLWRESDFYQAYL-GRQIFRVHDAQLRTQGGELVPVALSC 247

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+          +    D++  +   + +   A  D LTG+ NR+ F       L  + 
Sbjct: 248 APLPVDQ---QAMVVTVLDMSVVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGALLRNE 304

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             D  +  +M +D+D +K+IND LG   GD VL  +  ++ + L    +LAR+ G+ F  
Sbjct: 305 RSDKAQ-ALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGDEFTA 363

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +  S     +   +A  + + +++   +   ++ +  SIG A++         +L+ A+ 
Sbjct: 364 LFDSLPYPEQAGRYAERLLERVSISHEVDGLDVCLGVSIGIATYPDCGANVEGLLRAADA 423

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G      +    +     R+M+++ +  A+E  +  LVY P +   D  + G
Sbjct: 424 AMYAAKRAGRQQYRFYDQELNGRARSRLMLEDGVRTAIEQQDFTLVYQPQVSFNDGRLRG 483

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W HP  G++    F+ + EE  +I  +  ++  + A    +W ++     + + 
Sbjct: 484 FEALLRWQHPSVGDVPPGLFIPLLEEARLINRLASWIYRQGAAQRQAWYERFPA-DLVLG 542

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           I+++    +   L E +Q +I      P+++++  +E+ +M N + +   + RLR++G+ 
Sbjct: 543 ISLSRAQFVMPGLVEELQRVIQLYQLVPAQLEVEVAETSLMYNIDAAVKQIHRLRELGVR 602

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFG     L  L  +P DT+K +  L+     +    A++RS+I +  +   T+IA
Sbjct: 603 VALDDFGAGDCSLRMLRDLPIDTLKLDRHLVARLPDSAVDAALVRSVIGLCADYSITVIA 662

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + +     +  L   GC+Y+Q   VA P+     
Sbjct: 663 EGVETPAQVAWLKANGCEYVQGFLVAYPMTAADA 696


>gi|261339974|ref|ZP_05967832.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317892|gb|EFC56830.1| GGDEF domain protein [Enterobacter cancerogenus ATCC 35316]
          Length = 709

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/696 (21%), Positives = 277/696 (39%), Gaps = 42/696 (6%)

Query: 284 YITFSGIACIAILFCM------SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
            I  S +      F                A   R+     +    + + + GM      
Sbjct: 10  LIAISYLVAFIASFVALDSAGKIPLSGRKAAMFWRMAGGITLGIGIWSMHFIGMLSMNMP 69

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDI---IQPALVGGLVLIVILIGFTVIQHVLATG 394
           +++     L         +A T  ++  +       L      +++  G   + +V    
Sbjct: 70  MIMSYHLWLTLASLGVAVLASTLAINIAVRGKSLSPLRLIFATLILSAGVVSMHYVGMAA 129

Query: 395 YFSQGIFSDGERQSL-----AVLGSGDIVWD---WDIVRDRVTTTPDIATI-LGLASGSM 445
              +G      R  L     AV  SG  +W        R  V     +A + +G A  +M
Sbjct: 130 LMLKGGIIWDRRIVLLSVIIAVAASGVALWLAFHLRDKRKGVFINRIVAALVMGAAICAM 189

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           H    +   + H          ++  V      L     V         +++ I  + +S
Sbjct: 190 HYTGMS-AAHFHE---------MEHIVPGGISELGLSIWVSVTTLCLLGIMLIISLV-DS 238

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +    R           ++    +   A  D LTG+ NR     RL   L  +  +    
Sbjct: 239 HWRTARLT------DNLQQLNRQLELQARFDALTGLANRHQMDIRLQDCLHSALLNKK-S 291

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +DID +K++ND  G  VGD++L+++ +RI   L     LARL G+ F ++L   +
Sbjct: 292 FAVVFLDIDHFKRVNDTWGHHVGDELLIAVAQRITARLTREVTLARLGGDAFILLLPDYD 351

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  K+      + + I  P+++    ++VT S G + +     T  E+   A+ AM H K
Sbjct: 352 D-EKLNLHLTPLLEDIRRPLSVCGHTLSVTLSAGVSLYPEHGETLHELKLKADAAMQHIK 410

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +R              ++L  A+E  +  L Y P        I G EAL++
Sbjct: 411 REGRNGWAVYRAQMSTVIPAEPGFLQELSQALERDQFELWYQPTYIADQNAIHGFEALLR 470

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G +  + F+   E+  +I  +  + +E   R +  W +Q       +  N++  
Sbjct: 471 WRHPEQGVLLPNLFLPSLEQTGLIVPVGNWAIEAACRQLHFWTEQ-GFSQWTLSFNLSPV 529

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +L + + +++ K   +PSR+ L  +ES  + + +RS  LL    + GI++++DDF
Sbjct: 530 QFEQQDLFQVISSMLQKYNLAPSRLILEVTESTALKDLDRSIELLNAFTQAGITVSIDDF 589

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L  L  +P   +K + S +      EK   ++ +II +A+ +E +++A+ I  E
Sbjct: 590 GTGYSNLLMLSVLPAKELKIDRSFVNSMVVNEKSRKLVETIINIARTMEMSVVAEGIETE 649

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                L  MGCDY+Q    + PL    +  LL ++ 
Sbjct: 650 EQQAALAEMGCDYLQGFLFSRPLPAEQVPWLLLQKN 685


>gi|54309631|ref|YP_130651.1| hypothetical protein PBPRA2467 [Photobacterium profundum SS9]
 gi|46914069|emb|CAG20849.1| hypothetical protein PBPRA2467 [Photobacterium profundum SS9]
          Length = 663

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/464 (26%), Positives = 219/464 (47%), Gaps = 15/464 (3%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  I  + + +    +L       +I+ +K+ L     NA  D LT + NR+   + 
Sbjct: 191 SHLWFDIEGKWLKDKQQLLLH----LTNISPEKEKLRKAKYNAEHDFLTDLLNRRGISNA 246

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +       +       +++ +DID +K IND  G A+GD +L ++  R+ E L+   +LA
Sbjct: 247 INE-----SNHQQQPYSLLFLDIDGFKMINDTYGHAIGDKLLKAIAIRLRETLQHKGLLA 301

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKIT 669
           R  G+ F II +   N      FA  +   +  P +L E  E+++  SIG AS+      
Sbjct: 302 RFGGDEF-IIQVEHRNVQNTPSFAKDIIAKLNKPFHLKEVGELSIGCSIGTASYPDDADN 360

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
              ++  A++AM+ AK RG N    F      +      ++  L LA+E     L Y PI
Sbjct: 361 IETLVTQADMAMHRAKLRGRNCSHHFSPDMAEALYRKMILRHHLTLALETEAFELYYQPI 420

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           I L   ++ G EALI+W   + G +S +EF+ +AEE   I  +  ++ +     + +W+ 
Sbjct: 421 IDLKTRKLKGFEALIRWYDEELGQVSPAEFIPLAEETGQIVPLGKWIFKTAFLQLAAWQK 480

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +       + +N++   L    L   ++A+I     +P+++ L  +ES ++   + ++  
Sbjct: 481 KY-DKAFMMSVNLSRAQL-QASLAPTIEAMILHYNINPAKLALELTESTMLQEYDDAKQC 538

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907
           L  L  +GI L LDDFGT  S LS L  +P  TVK + S + G+ +   AI+ +   + +
Sbjct: 539 LEDLAALGIELYLDDFGTGYSSLSQLQDLPISTVKLDQSFVQGNHKGSRAIIEATKAICE 598

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++  ++A+ +     +K L     DY Q  ++A P+  + +  
Sbjct: 599 KLDLKVVAEGVETIEQLKYLQMCNFDYCQGYYLAKPMPAHQLEA 642


>gi|154248589|ref|YP_001419547.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
 gi|154162674|gb|ABS69890.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Xanthobacter autotrophicus Py2]
          Length = 864

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 115/459 (25%), Positives = 221/459 (48%), Gaps = 22/459 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ ++ + I   A  D LTG+PNR+  ++ L  ++  +A  D     VM++D+D +K 
Sbjct: 400 VLERSEARDRIATLASIDALTGLPNRRRLIESLGDLIAEAAERDEP-LAVMMLDVDHFKD 458

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +N+ LG + GD++LV + RR+   L+  D + R  G+ F +++     + + A  A  + 
Sbjct: 459 VNETLGHSTGDELLVEMARRLQAQLRTGDTVGRTGGDEFVVVVHDCA-AEEAARIARRLI 517

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFR 696
             ++ PI   +  +T++AS+G A +     ++  +L++A+ AMY AK   RG     +  
Sbjct: 518 DYLSAPIPAQKLHLTMSASVGIALYPQHGTSAETLLRHADTAMYEAKSKARGRFQFFTED 577

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM---------------DEEIVGLEAL 741
           ++    DR+++   L  AV+N  L LVY P + L                   + G+EAL
Sbjct: 578 LNKRVEDRLVLSVALREAVQNQALRLVYQPQVTLAKVTLSNDTPSNGTLAGGALHGVEAL 637

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W  P  G + +  F+ +AEE   I++I+ + +E   R I  WR +    P  + +N++
Sbjct: 638 ARWSDPVHGEVPAPRFIALAEEYGFIESIDQWAVEEACRQIAVWRAEGVAVP-HVSVNLS 696

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                  E+   +   + +   +PS +++  +E V M     S      +  +G+ + +D
Sbjct: 697 PLSFRSGEIVGIIADALERHRLAPSDLRVEITERVTMDQNPHSFATARAIDALGVRIAMD 756

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L  +P   +K + S M    + +   A+  ++I + +++   ++A+ + 
Sbjct: 757 DFGTGYSSLSALSRLPIAELKIDRSFMLSIEQDKNALALATAVILIGQSLGMAVVAEGVE 816

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
                  L  +GC  +Q    A PL  +++   L    P
Sbjct: 817 TAAQADLLRTLGCHAVQGYLFARPLEADAVAGWLAANAP 855



 Score = 56.9 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 3/126 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            SL    +   V   D     V T      +LG   G   G +      +          
Sbjct: 127 LSLVAEKTDRGVVVTDARHRIVYTNRAFQEMLGYVEGEAEGRVLE--DLLATGKGATDLA 184

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKS 525
              S    RR     +  +R A     W+   + P+ N   G +   + +  DIT  +  
Sbjct: 185 ARISSGIQRRMPFPEDVPLRGASGNEVWVSAIVTPVLNQVTGALEHVVAVLADITHARLM 244

Query: 526 LEGILC 531
            +    
Sbjct: 245 EDLQRQ 250


>gi|167922268|ref|ZP_02509359.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei BCC215]
          Length = 688

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 198/424 (46%), Gaps = 7/424 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR++  +        +A     +  ++ +D+D +K IN  LG   GD+VL +
Sbjct: 259 FDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINGSLGHPAGDEVLKT 317

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +        + + V
Sbjct: 318 FSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWNDGQVLQV 377

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           T SIG A +     T+  +L++A+ AMY AK  G      F   +    +  + ++  L 
Sbjct: 378 TPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAAARALKLQHALH 437

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+++    L + P  R   + + G EAL++ +HP  G ++  EF+ +AE    I  I  
Sbjct: 438 EALDSDYFSLCFQPKFRCDGQRLAGAEALLRLNHPTLGKLAPMEFIPVAERSGQIIEIGY 497

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++    R +  WR   +     I IN++ + L   +L   +  ++      P ++    
Sbjct: 498 WVIRETCRHLKRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEI 556

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +K +        
Sbjct: 557 TESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALD 616

Query: 893 EKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ   +  P+     
Sbjct: 617 EQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEF 676

Query: 950 LKLL 953
             ++
Sbjct: 677 EAMV 680


>gi|302537100|ref|ZP_07289442.1| membrane associated phosphodiesterase [Streptomyces sp. C]
 gi|302445995|gb|EFL17811.1| membrane associated phosphodiesterase [Streptomyces sp. C]
          Length = 987

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/799 (19%), Positives = 309/799 (38%), Gaps = 53/799 (6%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRS--SMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
               +IG + L   +        R+  S    +   A + L Y  +D   +S ++ L   
Sbjct: 179 LDSWLIGGSLLTLSWSLALANAARTAQSGAPGSVPRAALSLAYPLLDIALVSMVLVLHFR 238

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPM 305
                R+    A+++  +  L   L  +         G I  +G    ++L   + +   
Sbjct: 239 RSANNRSAVNTAIAALALTVLSDALFTSPLLNTTYSSGEILDAGWFAGSLLLAYAPWGAR 298

Query: 306 VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND 365
            T    R         ++  I      G   A  L P           L+  +  R  + 
Sbjct: 299 RTEPEPRPAPPRPERPHSRPIT-----GSLPA--LTPYLAAAVCTLGILYNVVDGRKVDR 351

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           ++     G  V++ ++I   ++  +L     +Q +          V GS D++       
Sbjct: 352 MVV--FTGCTVVLALVIRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPTG 407

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYE 482
                +P  A + G  +  + G        IH +D       +  F+          + E
Sbjct: 408 TLRYVSPAAAGVYGREAEELVGT--ELAALIHPDDLGRVVHEVRRFLAAPPAEEPTTRIE 465

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R  +   ++  +   +             I  + D+TE+ +    +  +A  D LT +P
Sbjct: 466 CRFESGGGEWLNVESTVNRHQG------GLILNSRDVTERVRLQAQLQHSAEHDPLTDLP 519

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F  R+   L       +    V+ ID+D +K +ND +G   GD++LV   RR+ + 
Sbjct: 520 NRALFTRRVRQAL-TGRRAGDHSTAVLFIDLDGFKAVNDTIGHQAGDELLVEAARRLQDA 578

Query: 603 LKFPDILARLSGNRFGIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTA 656
           ++  D  ARL G+ F  +++ + +        ++ D A  +R +++ P  +   E+ V A
Sbjct: 579 VRAGDTAARLGGDEFAALILGDGSRDRSARECQVHDIADRLRATLSQPYRIAGSEVRVAA 638

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLA 714
           SIG A      IT S++++NA+LAMY AK  G + VE +             +   L  A
Sbjct: 639 SIGVAFADP-GITPSDLMRNADLAMYRAKAGGKDRVELYAPQMQAEVTRKAELAGRLRTA 697

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC--------- 765
           +   E  L++ P++ L   E+  + A  +W   +    + +EF+ +AE            
Sbjct: 698 LHEGEFALLHQPVVCLATGEVAAVAAQARWRSAQGILFTPAEFLRVAEHSEGGPAAGPDG 757

Query: 766 -MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC-EGMQALISKTLY 823
                +  ++LE    +        +  P  + + + ++ LLD       ++AL+++   
Sbjct: 758 SRTAELGRWLLEEAVEEAAERHRAGHDVP--VAVRMTAQRLLDRSSPGSSVEALLTRHGL 815

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  + S      +     L  L ++G+ + LD FG+  + +S L  +P D +K 
Sbjct: 816 PSGSLVLELAASDPRVPFDELERRLTALHRLGVRIALDGFGSGYAAISALRRLPVDLLKL 875

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +  L+ G  E      I   ++ +A ++    +A  +     +  L  MGC + Q +  +
Sbjct: 876 DRGLVEGVVESARLHKITAGLLRIANDLGMQSVADGVDLPEQVLALRAMGCTHGQGAAFS 935

Query: 942 SPLGFNSILK-LLKERFPL 959
            PL    + + L++  FP+
Sbjct: 936 GPLDEYRLRRALVRGTFPV 954


>gi|271969278|ref|YP_003343474.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Streptosporangium roseum
           DSM 43021]
 gi|270512453|gb|ACZ90731.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like protein [Streptosporangium roseum
           DSM 43021]
          Length = 693

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/665 (20%), Positives = 284/665 (42%), Gaps = 30/665 (4%)

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF----IGLWMAITKRL 362
            A++  I   ++V+   +             +  +   +++        +   M +    
Sbjct: 22  LATVITIGFTALVVAQWWISPPELADLARSPLFWMLTALVVLGELRPVLLSSSMTVGGTY 81

Query: 363 DNDIIQPA--LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            + +   A  L  GL + V++    ++ +   T      +  +  + +LA   +G ++  
Sbjct: 82  PSTMFTFAALLHYGLPVAVLMQAVGMVVNCAVTRKAWHRVMFNIAQATLACTAAGLVLAL 141

Query: 421 W-DIVRDRVTTTPDIATIL-----GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           +       V+  P    +L     GLA   +   + +    +H       R  ++  +  
Sbjct: 142 FGSPPSPEVSWVPRGPDMLAIGLAGLAYFVVRALLVSGAVALHE------RRSINRVIRT 195

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             G     +           +++   P       +  ++     +             A 
Sbjct: 196 TIGHQSLVYAGLLGLAPLVVVVMNHSPAL-----VPLFVAPMAAVYFTATLSVRRDHQAM 250

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR+  +      L  +   +  R  + ++D+D++K++ND LG  VGD +L  
Sbjct: 251 HDGLTGLPNRKLLVLGTEEALAEARLSE--RVGLFLLDLDRFKEVNDTLGHPVGDRLLQI 308

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+   ++  D++ARL G+ F ++L S  ++    + A  +R ++  P+ L      +
Sbjct: 309 VAHRLTHSVRPGDVVARLGGDEFAVLLPSIRDAAAAREVAARLRVALTEPVLLEGMTFDL 368

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCL 713
            AS+G A +         +L+ A++AMY AK  R G  +          +R+ +  DL  
Sbjct: 369 DASVGIALYPDHAPDFELLLQRADVAMYLAKEGRTGVEIYVADKDRNSPERLNLIGDLRR 428

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++ SEL L Y P + L   ++ G+EAL++W HP+ G IS  EF+ +AE+  +++ +  +
Sbjct: 429 AIDRSELRLHYQPKLDLASGQVRGVEALLRWRHPERGMISPGEFVPMAEQSYLMRHLTQY 488

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++        W          I +N++++DLLD+ L + ++A +++    P  I+L  +
Sbjct: 489 VIDAALEQAAHWWHTGVHEQ--ISVNVSARDLLDSALPDRLEAGLAQYRLPPKAIQLEVT 546

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E ++M +   +   +  L  +G+ L LDDFGT  S L  L  +P   VK + S +     
Sbjct: 547 ERILMTDQAYTADAVRALASLGVPLALDDFGTGYSSLVRLQRLPVSEVKIDSSFVRRICE 606

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++    I+RSI+ + +++    +A+ +        L  MGCD  Q    A P+       
Sbjct: 607 SKDDERIVRSIVDLVRSLGLRSVAEGVESAEVATCLADMGCDLAQGWLFAEPMSAVDATV 666

Query: 952 LLKER 956
            L++ 
Sbjct: 667 WLRKH 671


>gi|328885234|emb|CCA58473.1| Sensory box or GGDEF family protein [Streptomyces venezuelae ATCC
           10712]
          Length = 946

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/757 (19%), Positives = 300/757 (39%), Gaps = 44/757 (5%)

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RW 278
            A A + L Y  +D   +S ++ L        R+ +  A+++  +  L   L  +   R 
Sbjct: 190 VAQAALSLAYPLLDIVLVSMVLVLHFRRSQANRSATNTAIAALALTVLCDALFTSPLLRE 249

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV 338
           +   G +  +G    ++L   + +        A             ++    + G   A 
Sbjct: 250 NYASGQLLDAGWFAGSLLLAYAPWGARRLPDTAATARG-------PWLHSRPVAGSLAA- 301

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
            L P           L+  +  R  + ++   L G  V++ +++   ++  +L     + 
Sbjct: 302 -LTPYLAAAVCTLGILYNVVEGRRVDRVVV--LTGCTVVLALVVRQGIM--LLDNIALTH 356

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +          V GS D++            +P  + + G  +  + G        IH 
Sbjct: 357 ELAHKENHFRSLVQGSSDVIMIAAPTGVLRYVSPAASGVYGRDAEDLIGS--ELASLIHP 414

Query: 459 NDRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            D       +  F+          + E R R+    +  +   +             I  
Sbjct: 415 EDLGAVVHEVRRFLAVSPAEEPTTRIECRFRSGRGDWLNVESTVNRHQG------GLIFN 468

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +    V+ ID+D 
Sbjct: 469 SRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRQALS-GRRASDPGTAVLFIDLDG 527

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD--- 632
           +K +ND  G   GDD+LV   RR+ + ++  D  ARL G+ F  +++ +    + A    
Sbjct: 528 FKGVNDRHGHQAGDDLLVQAARRLQDSVRAGDTAARLGGDEFAALILGDGGRDQAARRNQ 587

Query: 633 ---FAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
               A  +R +++ P  +    E+ V ASIG A +    I + ++L+NA+LAMY AK  G
Sbjct: 588 VQEIADRLRLTLSRPYRVDGGTEVRVAASIGVA-FAEPGIGAGDLLRNADLAMYRAKAAG 646

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            + VE +             +   L  A+ + E  L++ P++ L    I  + A  +W  
Sbjct: 647 KDRVELYAPQMQAEVVRRTELAARLRTALHDGEFALLHQPVVDLATGRISAVSAQARWRS 706

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            +    + +E++ + ++      +  ++L+             +  P  + I ++++ LL
Sbjct: 707 AQGILFTPAEYLRVTDDGERTAELGRWLLDEAVEQAAERARIGHRTP--VAIRLSARRLL 764

Query: 807 DNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           D  L    +++L+++       + +  ++S      +     L  LR++G+ + LD FG+
Sbjct: 765 DRSLPLGSVESLLTRHGLPSGSLIVELADSDPRIPLDELEQRLVTLRRLGVRIALDGFGS 824

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEID 923
               ++ L  +P D +K +  L+ G  E      I R ++ +A  +    IA+       
Sbjct: 825 GHVAINALRRLPVDILKLDRGLVEGVVESARLRKITRGVLRIAGELGMETIAEGADVPEQ 884

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPL 959
           +  L  MGC + Q    A PL    + + L+++ +PL
Sbjct: 885 VVALRAMGCTHAQGMAFAGPLDEYRLRRALVRDEYPL 921


>gi|167897696|ref|ZP_02485098.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 7894]
          Length = 688

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 198/424 (46%), Gaps = 7/424 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR++  +        +A     +  ++ +D+D +K IN  LG   GD+VL +
Sbjct: 259 FDTLTDLPNRRTLNEH-LGRALAAARARGGKLAILFMDLDGFKTINGSLGHPAGDEVLKT 317

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            ++R+   ++  DI+ARL G+ F ++L S ++  + A  A  + + +        + + V
Sbjct: 318 FSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARNVLERMRKGRWNDGQALQV 377

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           T SIG A +     T+  +L++A+ AMY AK  G      F   +    +  + ++  L 
Sbjct: 378 TPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEATMDEAAARALKLQHALH 437

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+++    L + P  R   + + G EAL++ +HP  G ++  EF+ +AE    I  I  
Sbjct: 438 EALDSDYFSLCFQPKFRCDGQRLAGAEALLRLNHPTLGKLAPMEFIPVAERSGQIIEIGY 497

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++    R +  WR   +     I IN++ + L   +L   +  ++      P ++    
Sbjct: 498 WVIRETCRHLKRWRSA-HRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEI 556

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ESV M +P R+  ++   +  G  + +DDFGT  S L+YL       +K +        
Sbjct: 557 TESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALD 616

Query: 893 EKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E+     AI+ +II +A ++   ++A+ +     +  L  + CD IQ   +  P+     
Sbjct: 617 EQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEF 676

Query: 950 LKLL 953
             ++
Sbjct: 677 EAMV 680


>gi|239928760|ref|ZP_04685713.1| membrane associated phophodiesterase [Streptomyces ghanaensis ATCC
           14672]
 gi|291437082|ref|ZP_06576472.1| integral membrane phosphodiesterase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339977|gb|EFE66933.1| integral membrane phosphodiesterase [Streptomyces ghanaensis ATCC
           14672]
          Length = 997

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/847 (19%), Positives = 318/847 (37%), Gaps = 61/847 (7%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNR 214
           P     F +  + P +  + +                   +IG + L   +        R
Sbjct: 128 PSYADLFFLCFAPPAIVGLLVLAKRPVTRAGWVCLALDAWLIGGSLLTLAWSLALAQAAR 187

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           +    P  A   + L Y  +D   +S ++ L      + R+    A+ +  +  +   L 
Sbjct: 188 AES--PDVAHTALSLAYPLLDIALVSMVLALHFRRSAVNRSAVNTAIGALALTVMCDALF 245

Query: 275 WNRW---HAKVGYITFSGIACIAILFCMSFYY--------------------PMVTASIA 311
            +       + G +  +G    ++L   + +                     P       
Sbjct: 246 TSPLVHSSYRSGQLLDAGWFAGSLLLAYAPWTAPRDGRSDDEGRTRVVREHVPGRPGGPD 305

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
                        + +   + G   A  L P           L+  +  R  + ++    
Sbjct: 306 LDRPPVPGGEQDRYPVTRPIAGSLAA--LTPYLAAAVCTLGILYNVLNGRSVDRVVL--F 361

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            G  V++ +++   ++  +L     +Q +          V GS D++            +
Sbjct: 362 TGSTVVLALVVRQAIM--LLDNITLTQELAQKENHFRSLVQGSSDVIMIAAPSGILRYVS 419

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR---RGRLQYEFRVRAA 488
           P  A + G ++  + G        IH  D       +  F+          + E R R+ 
Sbjct: 420 PAAAGVYGRSAEELVGT--ELAGLIHPEDLGCVVHEVRRFLAADPVAEPTTRIECRFRSG 477

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D+ +  +   +             I  + D+TE+ +    +  NA  D LT +PNR  F 
Sbjct: 478 DDGWLNVESTVNRHHG------GLIFNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFT 531

Query: 549 DRLTTILDLSATDDNLRP----TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            R+   L      D         V+ ID+D +K +ND +G   GD++LV   RR+ E ++
Sbjct: 532 RRVQQALSGRRASDRGAALKGTAVLFIDLDGFKGVNDTIGHQAGDELLVQAARRLQEAVR 591

Query: 605 FPDILARLSGNRFGIILIS------ENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
             D  +RL G+ F  +++       +     I + A  +R +++ P  +   ++ V ASI
Sbjct: 592 KGDTASRLGGDEFAALIVGDGVRDRDARERHILELADRLRATLSQPYLIDGNDVRVNASI 651

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G A +    + + E+L+NA+LAMY AK  G   VE +R    +       +   L  A+ 
Sbjct: 652 GVA-FAEPGLGAGELLRNADLAMYRAKAAGKGRVELYRPQMQQDVVRRAELATRLRAALH 710

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + E  L++ P++ L D  I  + A  +W   +    + +EF+ +AE+      +  ++LE
Sbjct: 711 DGEFSLLHQPVVCLEDGRITSVCAQARWRSSQGALFTPAEFLRVAEDSEKTAELGRWVLE 770

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSES 835
                           P+   + + ++ LLD  L    ++ L+++    P  + L  +++
Sbjct: 771 EAVEQAAERHATGLSVPVV--VRLGARRLLDRSLPLGSIEGLLTRHGLPPGSLVLELADA 828

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
                 E     L  LR++G+ + LD FG  C+ ++ L  +P D +K +  L+ G  E  
Sbjct: 829 DPRVGLEELERRLAALRRVGVRIALDGFGGGCAAIAALRRLPVDVLKLDRGLVDGVVESA 888

Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    + + L
Sbjct: 889 RLHKITSGLLRIASDLGLQSVADGVDLPEQVVALRAMGCTHGQGMAFSGPLDEYRLRRAL 948

Query: 954 -KERFPL 959
              R+P+
Sbjct: 949 GTWRYPV 955


>gi|114778434|ref|ZP_01453279.1| Hypothetical protein yddU [Mariprofundus ferrooxydans PV-1]
 gi|114551278|gb|EAU53836.1| Hypothetical protein yddU [Mariprofundus ferrooxydans PV-1]
          Length = 578

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 217/438 (49%), Gaps = 7/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + + +   +   +  D LTG+ NR    +R      ++      +  ++++D+ K+K+IN
Sbjct: 135 KLQHNCREMEYQSRHDTLTGLANRPMLAERAMHAFQIARR-QAFKCCLVLMDLKKFKQIN 193

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L ++  R  + ++  D LAR+ GN F ++L++ N+  +    A  +  +
Sbjct: 194 DALGQQVGDLLLQAVASRFKQAVRSSDTLARVGGNEFAVLLLN-NDIEQAEIVAEKLHHA 252

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSS 699
           +     +    + +  SIG A + +     +++++ A  AM+HAK+   + +     +  
Sbjct: 253 LNPSFEMQGHILNIDVSIGIAEFPTHGEDIADLMQRANAAMHHAKNNKMDTMVYQSLLDE 312

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ +  +L  A+    L L Y P +    E I  LEALI+W HP  G +    F+ 
Sbjct: 313 HSLERLSLFNELNEAITTGTLELYYQPQVVTHGEGIPSLEALIRWPHPVKGMVFPDRFIP 372

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  +  ++LE       +W       P+ + +N ++  L ++++ + +   I 
Sbjct: 373 MAEDSGLIIPMTWWVLESAMEQCAAWHRAG--LPVTVAVNFSAHCLQEDDIVQRIADCIK 430

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +       + L  +ES++M +P ++  +L  + K+ + +++DDFGT  S L+YL ++  D
Sbjct: 431 RHNLPDHSLVLEITESMIMADPHQASTVLLEIDKLKVDVSIDDFGTGHSSLAYLKHLLVD 490

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S + G  E      I+R++I MA N+   ++A+ +    D   LT M CD IQ 
Sbjct: 491 ELKIDRSFVMGMHEHKNDEVIVRTVISMAHNMGLRVVAEGVETRRDWDALTAMNCDRIQG 550

Query: 938 SHVASPLGFNSILKLLKE 955
             ++ PL    I + L+ 
Sbjct: 551 YFISRPLPVEQITRWLEA 568


>gi|170726893|ref|YP_001760919.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella woodyi ATCC 51908]
 gi|169812240|gb|ACA86824.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella woodyi ATCC 51908]
          Length = 722

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/578 (21%), Positives = 250/578 (43%), Gaps = 33/578 (5%)

Query: 391 LATGYFSQGIFSDGERQSLAVLG---SGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           LA    ++  +   E+ +L +     S  +    ++  + V        TI G    S+ 
Sbjct: 158 LALTLATRDAYDKEEKLTLLLNAAEHSDQVTMLINLKTEVVEYVNQAHETITGKPKSSVI 217

Query: 447 GPIRNWLPYI--HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           G     L ++  H ++    R  L          ++ E ++   D    W+   ++    
Sbjct: 218 GSSLQELSFVSQHPDE---TRVALTQVKLG--SVVKGENKIVKQDGSQSWIRYSVKQFIT 272

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G+    +  A D +E+ K    +   A++  LT + NR  F   L  +          
Sbjct: 273 DRGNCFALLN-AEDCSEEHKHKIELEKLAWRCRLTDLYNRTYFTKELEKV---------R 322

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILI 622
           +  +++ID+  +K+ ND  G   GD +L+ + RR+     +   ++LAR+  + F IIL 
Sbjct: 323 KGYLLLIDLRGFKRFNDTYGHESGDLLLIEIARRLRHFGKVNHTELLARVGSDEFAIILP 382

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM-LKNAELAM 681
            E N   +      + + I +P+++   +I    ++       + I +  + L  A++A+
Sbjct: 383 -EMNLEDLEYATSRLYRQITLPVSIGREQIEPKPALAIVEI--AGIEAKFLPLACADIAL 439

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            +AK + G+ ++ F  S  +       I+ DL  A+   E  L Y P+  L     +G E
Sbjct: 440 QYAKKKQGDAIQVFNNSLLNTFKANAEIERDLQTALRGREFELYYQPLKDLQKRAYIGAE 499

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HPK G +    F+ IAE+   I AI  ++LE   + +  W+       + + +N
Sbjct: 500 ALIRWHHPKKGVLYPGAFIDIAEQTGHINAIGAWVLEAACKQLNLWQHH--NINLSMHVN 557

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +A++      L + + ALI++    P  + L  +E+ +M + + +  L   L ++G+ L 
Sbjct: 558 VAARQFFSGNLYDQVWALITRYRLKPGSLILEITETELMEDIKYATNLCKELTELGVGLA 617

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  +  ++ A+ 
Sbjct: 618 IDDFGTGYSSMRYLKQFPISKLKIDRSFISDLSVSHESQEIVSAIIAMASALNISLTAEG 677

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +     L    C   Q    +  L  +   + L++
Sbjct: 678 VETKEQELFLADHHCHQAQGFLYSPALRESEFSQFLEK 715


>gi|332305368|ref|YP_004433219.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172697|gb|AEE21951.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 766

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 216/436 (49%), Gaps = 9/436 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   E I   A+ D LT IPNR  F + +  +L         + TV+ +D+D++K IND 
Sbjct: 330 RDREEQIHHLAYFDELTNIPNRIQFSNHIRNML---KQQPECQLTVLTLDVDRFKDINDT 386

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  +GDD+L+++ RR+          ARL G+ +  ++  +       + A  + K   
Sbjct: 387 LGHDLGDDLLITIARRLSGYATKNGFCARLGGDEYA-LVSHQAAHSSPEEAAEQLIKVFE 445

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFR 701
            P  +    + V  S+G A +     +   +++ A++AMY  K +     V +  ++   
Sbjct: 446 QPFKIENVVLDVDCSVGIALYPQHAQSLQGLMQCADIAMYSCKDQHNPFAVYNDALNKHS 505

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ +  +L  A+   +L L Y P + +   ++  LE LI+W HP+ G +   +F+ +A
Sbjct: 506 VVRLSLMSELKSALAEGQLELHYQPKLTIHSHKVETLECLIRWFHPEHGFVPPDDFIPLA 565

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I+ +  + L      +  WR+Q       + +NI++ DL+D  L + + +L+ + 
Sbjct: 566 EQTGSIRHVTQWALRTACAQLKKWREQ--DVYFTVAVNISAIDLVDLSLPDSIASLLVEF 623

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS + +  +ES VM +P  +   L  LR +GI+L++DDFGT  S ++ L  +P D +
Sbjct: 624 DLPPSALTMEVTESAVMSDPHNALKALNLLRNMGITLSIDDFGTGYSSMAQLKKMPVDEL 683

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +      +    ++++++ +A+N+E T +A+ +     ++ LT +GC   Q  +
Sbjct: 684 KIDKAFVLDLATNQDDRVMVKTLVSLAQNLELTTVAEGVEDLATLEFLTEIGCTKAQGYY 743

Query: 940 VASPLGFNSILKLLKE 955
           +   L  + ++   + 
Sbjct: 744 MTKALRADELIAWYQN 759


>gi|254562835|ref|YP_003069930.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254270113|emb|CAX26103.1| putative diguanylate cyclase (GGDEF) /phosphodiesterase (EAL), with
           PAS sensor, signal transduction histidine kinase and
           methyl-accepting chemotaxis domains; putative
           membrane-associated protein precursor [Methylobacterium
           extorquens DM4]
          Length = 922

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/587 (21%), Positives = 237/587 (40%), Gaps = 31/587 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q   A    ++ +    +R   A+  + D VW  D                 L    +
Sbjct: 330 IAQLGRAFDDMAEAVAKRKKRLRDALESTTDSVWAIDKTWHVTFINGRSRA--HLEGREL 387

Query: 446 HGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G      +   +               +  R    +  F                    
Sbjct: 388 VGKHLWEAFPELV----GGPVWDAFRRVMSERAPT-KVTFHNETVGGHL-----EANVFP 437

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +SNG     +    ++TEQ ++ E +   A+QD LT +PNR+ F +     L+       
Sbjct: 438 SSNG---GIVTFTRNVTEQVRAQEELRRLAYQDPLTDLPNRRGFWEMTAGALE-----SG 489

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+++D+D +K +ND  G   GD++L     R+ + L     LARL G+ F  +L  
Sbjct: 490 QPLAVLLLDLDGFKHVNDTFGHGAGDELLREAATRLAQALGTDGTLARLGGDEFVALLAG 549

Query: 624 ENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAM 681
            + S      A  M  S++     +    + + AS G    T+ + T   ++L NA+LA+
Sbjct: 550 ASVSASAGTTARRMLGSLSERSFPIRGHVLPILASAGVVVATAGEQTNPEKLLANADLAL 609

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  GG  V +F     +       +++++  A    E  L Y P +RL D  +VG E
Sbjct: 610 YAAKAAGGGVVRTFTARDRKEYEARRLLEDEVERAALRGEFELHYQPQVRLADGMLVGAE 669

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP+ G ++ + F+   E     + +  ++++   R   SWR       + + +N
Sbjct: 670 ALIRWRHPEQGLLTPAAFLETLEASRHARVVGAWIIDEACRQAASWRKAGFE--LRVGVN 727

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + ++ L+  +L E +   +         +++  +E++ +       + L  L++ G+ + 
Sbjct: 728 LFAEQLVAGDLVEVVDGALRSAGLPAEALEIELTENIALRQQSSMLMPLRELKERGVGIA 787

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917
            DDFGT  + L+ L   P   +K + S +          AI+ +++ +A+++   +IA+ 
Sbjct: 788 FDDFGTGFASLTALRDFPVTRLKIDRSFIMKLAPGSHDAAIVEAVLTLARSLGLEVIAEG 847

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPL-GFNSILKLLKERFPLVKNT 963
           I  E     L   GCD  Q      P+     +      R  +++ +
Sbjct: 848 IETEAQEAFLASRGCDEGQGYRYGKPMDPAAFLAAATASRNAIIRRS 894


>gi|194324293|ref|ZP_03058067.1| EAL domain protein [Francisella tularensis subsp. novicida FTE]
 gi|194321740|gb|EDX19224.1| EAL domain protein [Francisella tularensis subsp. novicida FTE]
          Length = 698

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/587 (24%), Positives = 264/587 (44%), Gaps = 22/587 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L        +         +    +   L    S DI++  D     V        +   
Sbjct: 123 LRVLGTRSDISDLKQIELKLKETQDFLELMFDASEDIIFVKDKNYCLVRANRAFFNLFPK 182

Query: 441 -ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               S+ G     +   + +D + F    D+           E+ ++  + +   +    
Sbjct: 183 NTHSSLIGS--TLIENFNSSDAEYFLK-YDALAFETGSSKTIEY-IKLPNGEDRILDTYK 238

Query: 500 RPMSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
               + N      +GIA D+TE+       K + + +   A++D+LTG+ NR+ F+ + +
Sbjct: 239 IRFYDKNNTP-YLLGIARDVTEREIILNKLKDTNKKLEEIAYKDDLTGLLNRKGFIKKAS 297

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +      +    T+  ID+D +K IND  G  +GD++++ +++R+        I+ R 
Sbjct: 298 NHIAEIQNLN--LVTLFCIDLDNFKFINDSFGYNIGDELIIKISKRLKNFFNKDAIIGRS 355

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I+  +  + ++IA  A  + K IA P  +     + ++SIG A + +      +
Sbjct: 356 GGDDFLILTDNLQSLIEIAQIAENLIKEIAKPYIMKGNTFSQSSSIGIAIYPNVADNFEK 415

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +++ A+ AM+HAK +G N    + +   +  +    I  +L  A E +E  +VY P   +
Sbjct: 416 LIQFADTAMHHAKAKGKNTYSFYSLDYDQKTQRRNSIDRELRNA-EMAEFTIVYQPQFDI 474

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            + EI G+EAL++W  PK GNIS  EFM IAE+   IK I  ++  R  +D         
Sbjct: 475 -NNEIYGVEALVRWQSPKLGNISPEEFMPIAEKNQTIKNIGKWIFIRTIQDWNKLLSLNL 533

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + IN++S  +L    C  +  +I  +      I L  +E+ ++ N + +R ++  
Sbjct: 534 ANNLKLSINVSSVQILQENFCSEVINII--SNIDKHSITLEITETHLLANIDLTRTVISN 591

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNI 909
           + K+GIS  LDDFGT  S L YL  +P D +K +   +     +    I+ +I  +AKN+
Sbjct: 592 MNKLGISFALDDFGTGYSSLKYLANLPIDYLKIDKEFVQNLNIQNNKEIIIAITQLAKNL 651

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               IA+ I        L  +GC++ Q  + + P+ F ++ KLL+ +
Sbjct: 652 NKYCIAEGIETLEQFNFLKSIGCNFYQGYYFSKPISFLALKKLLQSK 698



 Score =  101 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 410 AVLGSG-DIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           A+  S  D +W WD+     +        ILG            W   ++ +D +  +  
Sbjct: 21  ALEHSSLDGLWYWDLENPQNMWLNKTFWQILGYDPDQKKHLASEWQNVVYPDDLNKVKQE 80

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +     +     R +  +    W+      + + NG  LR +G  +DI++ K+   
Sbjct: 81  LAKHLADPSYKYSAIVRYKHRNGSIVWIKCSGIAIRDENGKPLRVLGTRSDISDLKQIEL 140

Query: 528 GILCNAFQDNL 538
            +     QD L
Sbjct: 141 KLKE--TQDFL 149


>gi|27366980|ref|NP_762507.1| putative signal transduction protein [Vibrio vulnificus CMCP6]
 gi|27358547|gb|AAO07497.1|AE016809_259 Predicted signal transduction protein [Vibrio vulnificus CMCP6]
          Length = 758

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 224/451 (49%), Gaps = 11/451 (2%)

Query: 510 LRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           L + G+   I   +++++E +   A  D LTG+PNR    + + + L     +     ++
Sbjct: 312 LAFYGLVRSIANNEQQTIERLNKQATHDTLTGLPNRLYLRNNVNSWLK----NKTSPFSL 367

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D +K +ND  G   GD VL  +T+R+G       +L R + + F I+L+ E++  
Sbjct: 368 LFIDMDNFKSVNDTHGHDFGDQVLKQITQRLGSFNNDQRLLVREASDEF-ILLVKESDPA 426

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-R 687
            +   A  M   +A P  + + +  ++ S+G A + +       +L+ A+++MY AK  R
Sbjct: 427 LLKSLATTMIAKMAEPYVINDVQFLLSCSVGIAVYPTHGNDLDALLRAADISMYRAKQER 486

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              ++ +  +      +  +++ L  A+E  +L++VY P + + D ++ G+EAL++W   
Sbjct: 487 NSFNIFTTEMQEQHLYKTKVEQRLRFAIEQQKLFMVYQPQVDM-DGKLHGVEALVRWQDE 545

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    F+ +AE   ++  +  F++ER   DI S+        + + INI+ K  + 
Sbjct: 546 ELGFVPPDLFIPVAESSGLMVKLGKFIIERSVSDIASYV-LPQRQDLNLSINISVKQFIQ 604

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E +   I        RI L  +E++ + + E+ + +   + + G+ ++LDDFGT  
Sbjct: 605 QDFAEHLLTTIDTARLDRKRITLEITENLFIEDLEQFKPICNEMNQQGLKISLDDFGTGY 664

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P D +K + S +        +  ++++II + KN    ++A+ +  E+   
Sbjct: 665 SSLSMLKDLPIDELKIDKSFVDNIENDAKSFNMVKNIIAIGKNFGMAVLAEGVETELQAN 724

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +L   GCD +Q  + A PL    +   L E+
Sbjct: 725 KLAECGCDLLQGYYYAKPLNVEQLQSYLDEQ 755


>gi|330901056|gb|EGH32475.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 545

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/442 (24%), Positives = 214/442 (48%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGGVALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAQERALQMAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSE 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLNR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++    P  ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S   +L  +
Sbjct: 394 LIAEHNVDPRWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 454 PIALLKIDMGFVGQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSFGCNQ 513

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+ +
Sbjct: 514 VQGYLISRPLPVEELVTYLRSQ 535


>gi|162148351|ref|YP_001602812.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786928|emb|CAP56511.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 694

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 123/444 (27%), Positives = 223/444 (50%), Gaps = 11/444 (2%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
                  D + + +++E +   A  D LTG+PNR SF DRL + + L+  +       + 
Sbjct: 230 GLASYLIDDSVRAETVERLHHIAMNDTLTGLPNRASFNDRLDSEIALARENKGT-FAFIG 288

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID++++K+IND+ G A GD+VL  L RR+  LL+  + +AR  G+ F  +     +   +
Sbjct: 289 IDLNRFKEINDLRGHAAGDEVLRILGRRLKGLLRDGEFVARTGGDEFAALYR-MGDRRDL 347

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--G 688
           +DF   + +++  P+ L   E+    S+G A W         +  NA+LAMY AK     
Sbjct: 348 SDFLGRLERALFKPLRLDGFEVQSGGSLGVAIWPDDTADKEMLANNADLAMYRAKADPIR 407

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                   +      R ++  DL  A+   +L L Y     +    I G EAL++W+HP+
Sbjct: 408 KICFYKPEMDEALRARRILAADLRDALARDQLSLHYQVQTSIATGRIRGYEALLRWEHPQ 467

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G+IS +EF+ +AEE  +I  I  ++L    R+  SW      PP  I +N+++   +  
Sbjct: 468 IGSISPAEFIPLAEENGLILPIGEWVLRTACREAASW-----EPPYKIAVNLSAVQFVHA 522

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + ++ ++++T  SP R++L  +E+ +  + +R+  +L  ++ +G+++ LDDFGT  S
Sbjct: 523 DLAKLVRTVLAETGLSPERLELELTETTIFADQKRALHVLREIKALGVTIALDDFGTGYS 582

Query: 869 LLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L    FD +K + S      +  + +AI+R+++ + K+    ++A+ I     +  
Sbjct: 583 SLDTLRAFSFDRIKIDRSFCCAAAANPQTLAIIRAVLGLGKSFGIPVLAEGIETYDQLSM 642

Query: 927 LTRMGCDYIQDSHVASPLGFNSIL 950
           L   GCD  Q   +  P     I+
Sbjct: 643 LNSEGCDEAQGFLLGRPAPLGQIV 666


>gi|260775040|ref|ZP_05883939.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260608957|gb|EEX35117.1| sensory box/GGDEF family protein [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1048

 Score =  425 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 221/582 (37%), Gaps = 16/582 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              + + +       ++      S        ++   D              +LG  S  +
Sbjct: 474  EARDITSRKITEARLYQREANLSHYYDQQPVMMITLDDHNCIQQVNHFAEQLLGYTSNQV 533

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             G       Y H +     R +L       RG  + E   R AD +  W+   IRP+   
Sbjct: 534  LGHSLGEF-YFHQDAVTP-RQVLLQPKQAMRGVWRREIEYRHADGRAVWVRENIRPLV-- 589

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              +    + +  DITE KK  E +   A  D LTG  NR  F   L   L    +     
Sbjct: 590  --ESGHLLIVGEDITETKKLAEQLEYQARHDLLTGTFNRNHFEMELAKSLLEVESYTRTH 647

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              ++ +D+D+ K +ND  G   GD  +      + E+L +  ILAR+ G+ F ++L    
Sbjct: 648  -AMLYLDLDQLKVLNDTAGHEAGDTAIQFCASMLEEVLPYNAILARMGGDEFAVLLKDCT 706

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                       +      P    +  + +T SIG      +  +   +   A+ A + AK
Sbjct: 707  ERDAKNVANTIVMTLSEQPFVWDDIRLNMTCSIGIRLIDHTADSPQMVHAQADTACHAAK 766

Query: 686  HRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIVGLEA 740
              G N    +        R   + +    +  A+ N  + L    I+    D+  +  E 
Sbjct: 767  EEGRNRYNLYCQDDADLQRREQEMECVSLVHNALANDRIELFAQQILALSQDDAPMHFEI 826

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+  + +   IS   FM  +E   + + ++  ++ +    + +  +      +   IN+
Sbjct: 827  LIRIRNAEGEYISPGIFMPASERYNIAQLLDKQVVTQTLDWLAANPEALANLGM-CSINL 885

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +   + + E    +   +  +     +I L  +E+  M N  ++  L  + +++G  + L
Sbjct: 886  SGHSMGNKEFIAFLLDTLQHSPVPCEKICLEITETAAMSNMNQAIELFSQFKRLGCKIAL 945

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
            DDFG+  S   YL  +P D VK +G  +      E    ++RSI  +AK +    +A+ +
Sbjct: 946  DDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEVDHLMVRSINDLAKQMGKQTVAEFV 1005

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERFPL 959
                 I  L  +G DY Q   +  P     ++ +LL ++  +
Sbjct: 1006 ENTRIIDLLVELGVDYAQGYVIGKPKPLEELVDELLTDKRSV 1047


>gi|326794671|ref|YP_004312491.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326545435|gb|ADZ90655.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 758

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/430 (24%), Positives = 208/430 (48%), Gaps = 6/430 (1%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A+ D LTG+PNR+   +++  ++             +  D+D +K IND +G  
Sbjct: 298 KELQELAYGDPLTGLPNRRYLNEQVPLLIQNIIKYKRF-GAFIYFDLDNFKSINDSIGHD 356

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD+VL  +  R+ +++   D + RL G+ FGI+L      L +   A ++ + I   + 
Sbjct: 357 VGDEVLSQVAIRLQKVMGDADKVLRLGGDEFGILLGDAGCELHVIQMADSILEVIQHTLK 416

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR-- 704
           + +RE  ++ S+G             +++NA++AMY AK +G N  E F  +  ++    
Sbjct: 417 VGDREFRLSTSLGIVFIPLHGSNILNLMQNADVAMYQAKRKGKNRYEVFAENLRQATVEL 476

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              +  L  A+  SE+ L Y P   L    IV  E L++W+HPK G +    F+ +AEE 
Sbjct: 477 NQGRISLERAIRESEIELYYQPQFDLQSGMIVSAEVLVRWNHPKRGLLFPDRFIPMAEET 536

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I A+  +++E+        R    +P + + +N++   + D  L + ++ ++      
Sbjct: 537 GLIVALGNYVIEKTFEYQAK-RIAQGLPVMRLHVNVSPLHVNDPHLLDFIKKMVHIYQVP 595

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + I L  +E+V++ + +R   +L  ++ +G+ +++DDFGT  S L  L  +P D +K +
Sbjct: 596 GNLIGLEITETVLVEDLDRVVEILCAIKALGVCISIDDFGTGFSSLGQLKNLPIDILKID 655

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +      +    I+ +II MA  ++  +IA+ I     ++ L    CD  Q   V+ 
Sbjct: 656 RCFVKDIERDQNDRMIVEAIIAMAHKLKMEVIAEGIETVKQMEMLGGYYCDTGQGFLVSK 715

Query: 943 PLGFNSILKL 952
            +      ++
Sbjct: 716 AVQEAEFSQM 725


>gi|226365224|ref|YP_002783007.1| hypothetical protein ROP_58150 [Rhodococcus opacus B4]
 gi|226243714|dbj|BAH54062.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 614

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/448 (24%), Positives = 207/448 (46%), Gaps = 7/448 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +    E +  +A  D+LTG+ NR++    L T L  S   +     ++ +
Sbjct: 163 IAALLAQVQARIVVEEQLRYSADHDSLTGLSNRRALYHHLDTRLASS---EPGPVAILFL 219

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K +ND  G   GD  + ++  R+       D+++RL G+ F ++L       +  
Sbjct: 220 DLDRLKPLNDFFGHGAGDGFISTIADRLRSTSDADDLVSRLGGDEFVLVLGGSVGLEEAE 279

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +R  +   + L    ++ + SIG A+    K T+S +L  A+ A+  AK +GGN 
Sbjct: 280 VRAQHIRDVVTERVRLGREVVSRSVSIGVAAGCPGKATTSSLLSQADQAVMVAKTKGGNA 339

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F             I+  L  A+ +  L+L Y P + L    I+G+EAL++W+HP  
Sbjct: 340 ISVFTDEMQEESEKRNMIELSLRAAIADESLFLEYQPEVDLRTGRIIGVEALVRWNHPLL 399

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+ +AE   +   +  +++ +  R    WR QA    + + +N++   L   +
Sbjct: 400 GLLQPGSFIDVAEATNVAGELGRWVIRKACRQWADWRSQAPELDLALAVNVSPGQLAGLD 459

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + ++  +++       + L  +E+ V+ +   +R  L  L  + + + +DDFGT  S 
Sbjct: 460 FLDVVRDALAEFDLRKGALCLEITENAVLSDLTWTREALEGLHAMDVEVAIDDFGTGYSS 519

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P  T+K +   +          AI++SII +A++    ++A+ +      ++L
Sbjct: 520 LSHLKALPVGTLKIDKGFVMNLDTNPGDRAIVKSIIGLAESFGLELVAEGVENVESARQL 579

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
             MGC   Q    + P+    I KLL  
Sbjct: 580 LDMGCYRAQGFLFSRPVSAEEIGKLLAA 607


>gi|325982978|ref|YP_004295380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
 gi|325532497|gb|ADZ27218.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosomonas sp. AL212]
          Length = 798

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/766 (18%), Positives = 271/766 (35%), Gaps = 49/766 (6%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
           A  V   ++           L     L+    +  AL+    + +  Y    +  A    
Sbjct: 29  ALFVTLIVATM--LAYIFWGLVGKNWLLGWLAAIYALTFVRFLMVKAYFR-KKPSAAESV 85

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIA-------RITLASIVLYYTYFIIYHGMKGYERA 337
           I        A+L  + +        +A        +      +           KG   A
Sbjct: 86  IWGQQFYIGALLAGILWGSAGSIFFVADSAIHQLFLAYLLGGMVAGAMATLSSYKGVFLA 145

Query: 338 VLLIPAW--------------------ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
             +  A                      L+F++ +G       +   D ++       +L
Sbjct: 146 FSIPVALPFTYQVITHESDIQMIIALTYLLFVFTMGRISHQLHQTVTDSLKFRFDNIELL 205

Query: 378 IVIL-----IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             ++     +   V +   A    +  +  + E   + +    D V   D         P
Sbjct: 206 KRLIQTKNQLEQRVAERTEALTITNDILHQEKELFQITLASISDAVITTDANGKITFLNP 265

Query: 433 DIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADN 490
                 G ++  MH    +     + I         L   +       +Y E  +   + 
Sbjct: 266 TAEIFTGWSNEEMHDTPLQEVFNIMDIATHKPVPDPLADHLNELENSPKYSECILIHREK 325

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           + + +   + P+ N     +  +    D+TEQ+K    +   A  D+LTG+ NR+ F +R
Sbjct: 326 KEYIIDYAVAPIQNEQKHRIGAVITFRDVTEQRKLTLKLAYQAAHDSLTGLLNRKEFENR 385

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L+ IL     +D     ++ +D+D++K IND  G + GD +L  +T  +   L+  D LA
Sbjct: 386 LSKILTSMRKND--MHALLYLDLDQFKIINDSCGHSAGDKLLRQVTALLHSKLRARDTLA 443

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FG+IL        +                   +  T+  SIG    T      
Sbjct: 444 RLGGDEFGVILEHCPKDQALQVADTLRELVQNFRFQWRGKTFTIGVSIGLFPITHGNQGL 503

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPI 727
              L  A+ A Y AK +G N V+ ++        V +++ L     A+      L Y PI
Sbjct: 504 EHALNAADSACYAAKEQGRNRVQIYQSVPHLQGSVEMQQWLPRIQNALTEQRFQLYYQPI 563

Query: 728 I---RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
                   E+    E L++        I    F+  A     I  I+ +++++  + I +
Sbjct: 564 QLISPKHAEQEQHGEILLRLQDENGQLIMPGAFLPAAGRHDQILPIDRWVVQQSLQLIKA 623

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
                        INI+ + L++ +  +     I  +   P+ I    SE   + + +  
Sbjct: 624 HATHTINAIYT--INISGQALVNEDFLDFTVNSIKASQLDPACICFEISEQTALNDLQHV 681

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              +  L+++G  +++DDF +  S  SYL  IP D +K +G L+          A++ SI
Sbjct: 682 IRFVTTLKELGCRISIDDFSSNLSSFSYLKDIPLDYLKIDGRLIKNMLTDPVNQAMVESI 741

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +   +    IA  +  +  ++ L  +G DY+Q   VA P   N+
Sbjct: 742 HHIGHIMRLKTIAVWVENDQTLQILENIGVDYVQGFWVAEPTPLNA 787


>gi|88799901|ref|ZP_01115473.1| sensory box/GGDEF family protein [Reinekea sp. MED297]
 gi|88777332|gb|EAR08535.1| sensory box/GGDEF family protein [Reinekea sp. MED297]
          Length = 518

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 227/444 (51%), Gaps = 7/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D  E ++ ++ +  +A +D LTG+ +R    +RL  +L ++ T+      V+ +DID +
Sbjct: 62  HDAVEARREIQNVRLSANKDPLTGLNSRHYVRERLDELLSVA-TNRGHSLAVLYLDIDYF 120

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+ N+ LG  +G+ +L  + +R+  LLK  D+L    G+ F I+L   ++ +     A  
Sbjct: 121 KEFNEALGHTLGNRILTQMAQRLNSLLKKGDLLGYYGGDEFIIVLPVLHDMMAAEMVARR 180

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  PI +   ++ V+ SIG A        S  +L+ AE A+  +K +G N    + 
Sbjct: 181 IFNAMTNPILIDHHQLQVSLSIGIAMGPVDATDSESLLRRAESALKDSKSKGRNAYSFYS 240

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +   S+R+ + + L  A+E +E  +VY  I+      + G EALI+W  P+ G +S 
Sbjct: 241 QSLNQSASERLKMDQLLRGALERNEFSIVYQAIVSEQGTRLKGFEALIRWSSPELGQVSP 300

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S F+ IAE++ +I  I L++L   A  +  W+ +     I + IN++ +   D  +   +
Sbjct: 301 SVFIPIAEQIGLISEIGLWVLRESAEQLKLWQSRY-DQAIVMSINVSPRQFHDESILPAV 359

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + +ISKT   P+ ++L  +E + +   ER+   +  L+  GI L LDDFGT  S LSYL 
Sbjct: 360 KGVISKTGLPPASLQLEVTEGLFLSASERTLNNIRLLKSSGIRLALDDFGTGFSSLSYLN 419

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +PFD +K + S + G    +K  A++ +II +A  +   ++ + +     +  L  +  
Sbjct: 420 QLPFDVLKIDKSFVDGLENNDKDQAMVMAIISIAHRLSMEVVVEGVETPQQVHVLRELSA 479

Query: 933 DYIQDSHVASPLGFNSIL-KLLKE 955
           D +Q  + + P+       + L +
Sbjct: 480 DALQGYYYSKPVSAREAEARFLSQ 503


>gi|220920473|ref|YP_002495774.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylobacterium nodulans ORS 2060]
 gi|219945079|gb|ACL55471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylobacterium nodulans ORS 2060]
          Length = 743

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/680 (21%), Positives = 273/680 (40%), Gaps = 53/680 (7%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYER----------AVLLIPAWILIFIWFIGLWMAI- 358
           +    LA+  +     +    ++   R          + LL      + +  +     + 
Sbjct: 82  VWDTGLAAGAVLSGTMLAAGAIRLAIRRPGVPACIAASFLLALGLCGLQVLALAAASVVP 141

Query: 359 -TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
               L   ++    + G V     +   V  H +     +  + +   R       S + 
Sbjct: 142 DAPPLPTPLLSRDAIAGAVAAASALLLAVATHGIVADARAAALRNAVARLRALTEASFEG 201

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +         +   P    ++G  + ++ G           +            +     
Sbjct: 202 IVVV-RDGRVLDVNPSFCALIGRPAEALRG--EALAALTDPDSLP--------LLAGAES 250

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
              +E R+R AD     + +R RP   S GD    I +   + E+ ++   I   A++D 
Sbjct: 251 PASHETRLRCADGTTVPVEVRARP--WSTGDAAYAIAV-RSLRERHEADRRIRMLAYRDQ 307

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            T +PNR +F + L   +     + N   ++  ID+D++K IN   G A+ D VL  L R
Sbjct: 308 ATSLPNRAAFDEALRAQITACVRN-NTTFSLHRIDLDRFKDINITFGHALADQVLAGLAR 366

Query: 598 RIGELLKFP--DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           R+ ++++    D + RL  + F ++ I    +      A  + + +A P+ + +R++ + 
Sbjct: 367 RLAQVVEAGTLDRVFRLGDDEFAVLQIDSERARPPETVARQIVEHLAAPVVVADRQVQIR 426

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCL 713
           AS+G A W         +LK + LA+  AK  GG     +  S  +    R  ++EDL  
Sbjct: 427 ASVGVAVWPEDGSGGEMLLKRSGLALDRAKRDGGGRHCRYDESLVAAIEARRRLQEDLAA 486

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + +    +VY PI+      IVG EAL++W HP+ G I  S F+ +AEE   I  +   
Sbjct: 487 GLRDGAFTIVYLPIVSFASRRIVGHEALLRWRHPRLGEIPPSRFIPLAEECGAIVDLGQL 546

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L    R   +W +        + +N++   L  ++  + + A++ +T   P R+++  +
Sbjct: 547 VLAEACRQAATWTEDHL-----VAVNVSGPQLQTDDFIDLVDAVLRQTGLPPERLQIEVT 601

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E++++ +  R    L  LR  G+ + LDDFG   S L     IPFD VK + S++ G  +
Sbjct: 602 EAILIDDRHRVAQRLRTLRARGVRVALDDFGKGLSSLQLPRDIPFDAVKLDVSIIRGLVQ 661

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA---------- 941
            R   A++ ++I +  ++    +A+ +      + L   GCD  Q               
Sbjct: 662 GREQRAVVEALIGLLHHLGRVTVAEGVETREQWEALRAAGCDLAQGVLFGTPRAQPIAGD 721

Query: 942 ---SPLGFN--SILKLLKER 956
               PL      +   L+ R
Sbjct: 722 VLIEPLPPAVTRLSDYLRRR 741


>gi|152968307|ref|YP_001364091.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kineococcus radiotolerans SRS30216]
 gi|151362824|gb|ABS05827.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kineococcus radiotolerans SRS30216]
          Length = 572

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 238/575 (41%), Gaps = 35/575 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  +       D                G     + G    +   + + DR  + T
Sbjct: 8   FEALFQQAPCGYLTTDADGRVTRVNDTFLHWSGHRREDLLGS--AFNRLLPVGDRILWST 65

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                +       +    +  AD      ++       ++G       +     E++   
Sbjct: 66  HSAPQLSTTGTVSEVVVEIVGADRVRRPALVTATRAPVTDGVPDEVRVVVFSAPERRAHE 125

Query: 527 EG---------------------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                                      A QD LTG+PNR      L +            
Sbjct: 126 RELVAALHRAEESDDRRAAAETESRRRALQDPLTGLPNRAGLSVHLESA-------TGTS 178

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+V+D+D +  +N+ LG+A GD++L+++  R+  +++   ++AR S + F  ++    
Sbjct: 179 VGVLVVDLDHFAVVNESLGVAAGDELLLTVAERLCAVVREGAVVARSSADEFV-VVDRCE 237

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A  + + +  P+ L   E+  +ASIG A        +   L +A +AM  AK
Sbjct: 238 DLDAARALAERLLEELTAPVVLAGLEVVTSASIGAALAAPEPGHADRALHDAGVAMQRAK 297

Query: 686 HRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG   VE     +    +DR+ +  +L   + + +L L + P +R+ D  I G+EAL++
Sbjct: 298 ARGRQRVEVHDPRTDDGAADRLRLLGELRRGIPDGQLRLHHQPQVRVHDGRISGVEALVR 357

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +  SEF+ +AE+  +++ +  ++L+        W        + + +N++++
Sbjct: 358 WQHPVRGLLPPSEFIDLAEQSGLVRELGAWVLDAAVEQAARWARDPECATVEVAVNLSTR 417

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L D  L + +   +++   +   + L  +E+ +  +P+ +   L  L+ +G+ +++DDF
Sbjct: 418 QLTDPGLVDAVTGALARHRLAAHLLVLEVTETALAVDPDAAAATLATLKDLGVGVSVDDF 477

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  + L+YL   P D +K + S +TG        AI+++ + +A+ +    +A+ +  E
Sbjct: 478 GTGYASLTYLQRFPVDELKIDRSFVTGLGVNASDTAIVQACVQLARAVGVRTVAEGVETE 537

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              + L  MGCD +Q    + P+   +  +  + R
Sbjct: 538 EQRRLLAEMGCDVVQGYLFSRPVEAAAFQEWARAR 572


>gi|332159678|ref|YP_004296255.1| RNase II stability modulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663908|gb|ADZ40552.1| RNase II stability modulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859979|emb|CBX70307.1| protein gmr [Yersinia enterocolitica W22703]
          Length = 664

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/489 (23%), Positives = 231/489 (47%), Gaps = 10/489 (2%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R    + E  V     +  ++       S S  +    I    DIT+++++ E +   A
Sbjct: 177 QRGASYEAERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILA 236

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   GD +L 
Sbjct: 237 NTDMITGLPNRHAIHERINSAI---QTRGDSSVGIIYLDLDNFKKVNDHYGHMFGDRLLK 293

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++  I   L   ++LARL G+ F +++ +      +      +   + +P  +   E+ 
Sbjct: 294 DVSLAILSCLGDNEMLARLGGDEFIVLVENAT-LNLLETTTQRILNRMKLPFRIGLIEVY 352

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
              SIG A       T   ++++A+ AMY AK  G      F     +   + V +  +L
Sbjct: 353 TGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKVSEYVWLDTNL 412

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +L + Y P I     +++G+EAL++W  P+ G I+  EF+  AEE  +I+ + 
Sbjct: 413 RKAIEQHQLQIFYQPKISTKTGKVLGVEALVRWLSPERGLIAPQEFISYAEESGLIRPLG 472

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L+   +  + W+ +     + I +N++++ L+D  +       +       S + + 
Sbjct: 473 KWVLQTSMQQAVDWKKRGIN--LRIAVNVSARQLIDEAIVTSFIESLEACELESSLVDVE 530

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES ++ N + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + S +   
Sbjct: 531 LTESCLIDNEDAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHI 590

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  +++R+II +A+ ++  +IA+ +  + + + L  +G D  Q    A P+  + +
Sbjct: 591 DTNPISQSLVRAIIVVAEALKMQVIAEGVETKEEEEFLDSIGVDEKQGFLYAKPMPADKL 650

Query: 950 LKLLKERFP 958
              L  + P
Sbjct: 651 EHWLVTQHP 659


>gi|332139471|ref|YP_004425209.1| GGDEF/EAL domain protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549493|gb|AEA96211.1| GGDEF/EAL domain protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 814

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 222/436 (50%), Gaps = 6/436 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D LTG+PNR     ++   L  S  DD L   +M +D+D +KK+ND  G
Sbjct: 371 NTAKLEKMAMFDVLTGLPNRNMLTFQIEKQLASSIRDDRL-VALMFMDLDDFKKVNDSHG 429

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L +   RI   ++  DI +R  G+ F I+L +  +   +   A  +      P
Sbjct: 430 HDVGDKLLKAAAMRISRPIRDSDIASRFGGDEFVILLSNIESKQHVDKVAQKIIDEFIDP 489

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           I +      V+ SIG A  + S+ T  E+L++A++AMY AK + G   + +   ++    
Sbjct: 490 IIVDGVTFYVSISIGIAITSHSRATPVELLRHADIAMYEAKAKKGAAFKVYDATMNLKVM 549

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +V ++ +   A+ +++  L   P I +   +++G EAL++W HPK G+IS ++F+ + E
Sbjct: 550 QKVELESEAREALRDNQFSLALQPQIEMHTGKLIGFEALLRWYHPKKGHISPAQFIPLLE 609

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               +  ++ +++ R  R +  +++    P I I IN+++   L   L E +Q  I K  
Sbjct: 610 NTSFMLELDYWVIARSTRIVRDFKNS-GYPDIKIAINLSAGQFLAPTLPEFLQQQIIKND 668

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P+++ L  +E+V++ + +R+  ++  +R++G  L +DDFGT  S LSYL  +P D +K
Sbjct: 669 IAPNQVCLELTETVLVSDIKRATSIMRTIREMGCMLAIDDFGTGYSSLSYLKSLPADYIK 728

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +     +     I+ S I M  N+   ++A+ I      + L    C   Q   +
Sbjct: 729 IDRSFVANIASSADDRNIVHSTISMVCNMGMQVVAEGIETSEQYELLCHFDCHIGQGYLI 788

Query: 941 ASPLGFNSILKLLKER 956
           + P+   +I  +L ++
Sbjct: 789 SKPISEANIWDVLNDK 804


>gi|326318972|ref|YP_004236644.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375808|gb|ADX48077.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 779

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/431 (29%), Positives = 224/431 (51%), Gaps = 8/431 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I   A  D LTG+PNR+ F   L   ++          +V+ +D+D+++++NDVLG 
Sbjct: 345 QDEIRQLADTDRLTGVPNRERFRRLLMEAMEHGGRSGE-PLSVITLDLDRFQQVNDVLGY 403

Query: 586 AVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           A+GD +L ++  RI   L+   +++ARL GN F ++L    +     D A  + ++   P
Sbjct: 404 ALGDRLLQAVVARIAAHLRTERELVARLGGNEFAVLLPG-ADEASARDTAQRITRAFESP 462

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSD 703
           +   ++ + ++A IG A W      +  +L +AE+AMY AK R  G  +    + S  + 
Sbjct: 463 LVFDDQMVDLSAGIGIACWPGPADDADTLLSHAEIAMYAAKRRLHGAQIYDPSMESSSAA 522

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + +  +L  AVE  EL L   P +RL  +   G EAL++W HP  G +   +F+  AE+
Sbjct: 523 ALSLLSELRHAVEAGELRLFLQPKLRLDGQAGCGAEALVRWQHPVRGLVPPMQFIPFAEQ 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              ++ + L++ E+ AR +   R Q     + I +N++++DL+D +L   +  L+++   
Sbjct: 583 TGFVRQLTLWIFEQAARYLA--RPQVRGLGLRISVNLSTRDLMDTDLSTRLGTLMARHGV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P    L  +ES +M +P R+  +L RL   G  L++DDFGT  S L+YL  +P D +K 
Sbjct: 641 EPGDFCLEITESAIMDDPGRAEAMLNRLSAQGFKLSIDDFGTGYSSLAYLKRLPVDELKI 700

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S + G         I+RS I +A N+  +++A+ +     +++L  + CD  Q  H+ 
Sbjct: 701 DKSFVMGMAADAGDAQIVRSTIDLAHNLGLSVVAEGVESAAILEQLRGLRCDEAQGYHIG 760

Query: 942 SPLGFNSILKL 952
            P+  +  L  
Sbjct: 761 RPMPADDFLAW 771


>gi|123440455|ref|YP_001004449.1| RNase II stability modulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087416|emb|CAL10197.1| putative signalling protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 664

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/489 (23%), Positives = 231/489 (47%), Gaps = 10/489 (2%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R    + E  V     +  ++       S S  +    I    DIT+++++ E +   A
Sbjct: 177 QRGASYEAERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILA 236

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   GD +L 
Sbjct: 237 NTDMITGLPNRHAIHERINSAI---QTRGDSSVGIIYLDLDNFKKVNDHYGHMFGDRLLK 293

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++  I   L   ++LARL G+ F +++ +      +      +   + +P  +   E+ 
Sbjct: 294 DVSLAILSCLGDNEMLARLGGDEFIVLVENAT-LDLLEITTQRILNRMKLPFRIGLIEVY 352

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
              SIG A       T   ++++A+ AMY AK  G      F     +   + V +  +L
Sbjct: 353 TGCSIGIALCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKVSEYVWLDTNL 412

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +L + Y P I     +++G+EAL++W  P+ G I+  EF+  AEE  +I+ + 
Sbjct: 413 RKAIEQHQLQIFYQPKISTKTGKVLGVEALVRWLSPERGLIAPQEFISYAEESGLIRPLG 472

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L+   +  + W+ +     + I +N++++ L+D  +       +       S + + 
Sbjct: 473 KWVLQTSMQQAVDWKKRGIN--LRIAVNVSARQLIDEAIVTSFIESLEACELESSLVDVE 530

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES ++ N + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + S +   
Sbjct: 531 LTESCLIDNEDAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHI 590

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  +++R+II +A+ ++  +IA+ +  + + + L  +G D  Q    A P+  + +
Sbjct: 591 DTNPISQSLVRAIIVVAEALKMQVIAEGVETKEEEEFLDSIGVDEKQGFLYAKPMPADKL 650

Query: 950 LKLLKERFP 958
              L  + P
Sbjct: 651 EHWLVTQHP 659


>gi|86359229|ref|YP_471121.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like) [Rhizobium etli CFN 42]
 gi|86283331|gb|ABC92394.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like) [Rhizobium etli CFN 42]
          Length = 737

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 110/446 (24%), Positives = 216/446 (48%), Gaps = 11/446 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K         A +D L+G+ NR      +   +  +         ++ +D+D +K++ND
Sbjct: 292 LKAEENSAREEALRDRLSGLSNRDGLGLAVDRFVAEA-RQSKRNVLLLYLDLDGFKEVND 350

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD ++ ++   +  L+    +LAR+ G+ F I  +S+  +      +  +   +
Sbjct: 351 SYGHGTGDQLIRAVAAGLKVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLSEQILDFL 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +  R + V ASIG A   +  I   E+++ ++LAMY AK  G   +  +  S   
Sbjct: 411 VEPLEIGRRVVVVGASIGIAMSPAGAIDREELVRRSDLAMYKAKEAGRARMTLYDPSMDA 470

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL +A+E+ +L L Y P++      + G+EAL++W+ P  G +S   F+ 
Sbjct: 471 DREQRNALELDLRIAIESGDLTLAYQPLVDAGTHALTGVEALVRWNRPGHGPVSPELFIP 530

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   +I+++ LF+L +       W +      + + +N++     +    + ++ ++ 
Sbjct: 531 IAETSGLIESLGLFVLRKACETAKQWPE------LNVSVNVSPGQFRNPAFTDYVRYVLK 584

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T    SRI L  +E  ++ NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD
Sbjct: 585 QTEIEASRITLEITEGYMIQNPQRTRQSIERLKGLGVKVALDDFGSGFSSIGYLRQFGFD 644

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G  E +    +L++ + +A++++  + A+ I  E     +   GCD +Q 
Sbjct: 645 RIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEGQAVAMRLFGCDCLQG 704

Query: 938 SHVASPLGFNSILKLLKERFPLVKNT 963
                PL    I ++L E     ++T
Sbjct: 705 YLFGKPLTAERITEMLDELRTAEQST 730


>gi|118497058|ref|YP_898108.1| signal transduction protein [Francisella tularensis subsp. novicida
           U112]
 gi|118422964|gb|ABK89354.1| signal transduction protein with a PAS, a PAC, an EAL and a GGDEF
           domain [Francisella novicida U112]
          Length = 701

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/587 (24%), Positives = 264/587 (44%), Gaps = 22/587 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L        +         +    +   L    S DI++  D     V        +   
Sbjct: 126 LRVLGTRSDISDLKQIELKLKETQDFLELMFDASEDIIFVKDKNYCLVRANRAFFNLFPK 185

Query: 441 -ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               S+ G     +   + +D + F    D+           E+ ++  + +   +    
Sbjct: 186 NTHSSLIGS--TLIENFNSSDAEYFLK-YDALAFETGSSKTIEY-IKLPNGEDRILDTYK 241

Query: 500 RPMSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
               + N      +GIA D+TE+       K + + +   A++D+LTG+ NR+ F+ + +
Sbjct: 242 IRFYDKNNTP-YLLGIARDVTEREIILNKLKDTNKKLEEIAYKDDLTGLLNRKGFIKKAS 300

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +      +    T+  ID+D +K IND  G  +GD++++ +++R+        I+ R 
Sbjct: 301 NHIAEIQNLN--LVTLFCIDLDNFKFINDSFGYNIGDELIIKISKRLKNFFNKDAIIGRS 358

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I+  +  + ++IA  A  + K IA P  +     + ++SIG A + +      +
Sbjct: 359 GGDDFLILTDNLQSLIEIAQIAENLIKEIAKPYIMKGNTFSQSSSIGIAIYPNVADNFEK 418

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +++ A+ AM+HAK +G N    + +   +  +    I  +L  A E +E  +VY P   +
Sbjct: 419 LIQFADTAMHHAKAKGKNTYSFYSLDYDQKTQRRNSIDRELRNA-EMAEFTIVYQPQFDI 477

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            + EI G+EAL++W  PK GNIS  EFM IAE+   IK I  ++  R  +D         
Sbjct: 478 -NNEIYGVEALVRWQSPKLGNISPEEFMPIAEKNQTIKNIGKWIFIRTIQDWNKLLSLNL 536

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + IN++S  +L    C  +  +I  +      I L  +E+ ++ N + +R ++  
Sbjct: 537 ANNLKLSINVSSVQILQENFCSEVINII--SNIDKHSITLEITETHLLANIDLTRTVISN 594

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNI 909
           + K+GIS  LDDFGT  S L YL  +P D +K +   +     +    I+ +I  +AKN+
Sbjct: 595 MNKLGISFALDDFGTGYSSLKYLANLPIDYLKIDKEFVQNLNIQNNKEIIIAITQLAKNL 654

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               IA+ I        L  +GC++ Q  + + P+ F ++ KLL+ +
Sbjct: 655 NKYCIAEGIETLEQFNFLKSIGCNFYQGYYFSKPISFLALKKLLQSK 701



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 410 AVLGSG-DIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           A+  S  D +W WD+     +        ILG            W   ++ +D +  +  
Sbjct: 24  ALEHSSLDGLWYWDLENPQNMWLNKTFWQILGYDPDQKKHLASEWQNVVYPDDLNKVKQE 83

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +     +     R +  +    W+      + + NG  LR +G  +DI++ K+   
Sbjct: 84  LAKHLADPSYKYSAIVRYKHRNGSIVWIKCSGIAIRDENGKPLRVLGTRSDISDLKQIEL 143

Query: 528 GILCNAFQDNL 538
            +     QD L
Sbjct: 144 KLKE--TQDFL 152


>gi|226941766|ref|YP_002796840.1| hypothetical protein LHK_02851 [Laribacter hongkongensis HLHK9]
 gi|226716693|gb|ACO75831.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 740

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 212/441 (48%), Gaps = 14/441 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +  +A  D++TG+ NR++ L      +D     +     +++ID+D +K+IND  
Sbjct: 309 RQAAHMQYDANHDSVTGLANRRALL----AAIDAQVRHEPEWMALVLIDLDFFKRINDSW 364

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-KIADFAIAMRKSIA 642
           G   GD++L    RR+  +      + RL G+ F +++     +  ++A     +   + 
Sbjct: 365 GHEAGDELLRETGRRLQAVADASHQVYRLGGDEFVVLVRGGPLAGTELARQTQTLLARLG 424

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  L    + ++AS G + +      + ++L+ A+ AMYHAK +G N    F  S  + 
Sbjct: 425 EPYELQHGTVMLSASAGISCFPEHADHAGDLLRLADAAMYHAKRQGRNGHVFFDRSMAQE 484

Query: 703 DRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +  D  L  A+   EL L+Y P++   +  +  +EAL++W HP++G IS + F+ +
Sbjct: 485 ADETLLVDTALRQAIPRHELRLLYQPVVDANNGHLGKVEALLRWKHPEYGAISPARFIPV 544

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  +  ++L    R    W D     P  + +N++++++L+    + +Q  +  
Sbjct: 545 AEESGYIAVLGDWVLGEACRQARIWLDAG--CPCRVAVNLSAREILEPNFIKRLQGHLLA 602

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P  ++L  +E  +  +   +   L  LR +G+SL +DDFGT  S LSYL   P   
Sbjct: 603 SGLPPQWLELELTERALY-DGNGAAERLADLRDLGVSLAIDDFGTGYSSLSYLCRYPVQV 661

Query: 881 VKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +        +AI+RSII +  ++   I+A+ +   +   +L  +GC  +Q   
Sbjct: 662 LKIDRSFVCQLDDPANLAIVRSIIALGHSLALEIVAEGVETSLQANQLRALGCTSLQGFF 721

Query: 940 VASPLGFNSILKLLKERFPLV 960
            A P     +++    R P+ 
Sbjct: 722 FARPQTATELVRW---RNPVT 739


>gi|126699119|ref|YP_001088016.1| putative signaling protein [Clostridium difficile 630]
 gi|255306482|ref|ZP_05350653.1| putative signaling protein [Clostridium difficile ATCC 43255]
 gi|115250556|emb|CAJ68380.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 697

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/554 (19%), Positives = 225/554 (40%), Gaps = 22/554 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               + G+ + ++  ++       +P    +  L    +  P+  W   +H  D + F  
Sbjct: 157 YDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYK 216

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   +      EFR +    ++ W+  R + M +  G+   + GI   + +Q K  
Sbjct: 217 SNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKI- 275

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D+LT + N   F+      +     +   +  ++++DID +K +N++    
Sbjct: 276 ---------DSLTQLLNYHEFMSVFEDKISNPMIE---KLCIVLLDIDDFKNVNEMYDRD 323

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+++ +L + I  +L     L +L G+  GI++ +     +I      ++  I     
Sbjct: 324 FGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNV-EENEILTLYNQIQNMIIHLQL 382

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
             +  + +T S G   +     T  E+ K A  ++ +AK  G N +  F       +   
Sbjct: 383 WRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYS 442

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +  DL  ++ +      L + P +     +I+G+E L++W + K   IS  EF+ I E
Sbjct: 443 LEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEVLLRWTNDKCKAISPLEFIPILE 502

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  MI  +  ++L    R    W D        + +N+++  +L++   E +  +I    
Sbjct: 503 ENDMINIVGAWVLRMALRTFRKWIDYYPF--FKVSVNVSAVQILEDTFIEDIVKIIDDEN 560

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +    + L  +ES  + N    +     L+ +GI + +DDFGT  S L  L + P D VK
Sbjct: 561 FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVK 620

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     ++     +  I+ +  ++   +  + +  + +   + ++  DYIQ    
Sbjct: 621 IDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLF 680

Query: 941 ASPLGFNSILKLLK 954
             P     I  LLK
Sbjct: 681 GKPQTATEIFDLLK 694


>gi|29829276|ref|NP_823910.1| integral membrane phosphodiesterase [Streptomyces avermitilis
            MA-4680]
 gi|29606383|dbj|BAC70445.1| putative integral membrane phosphodiesterase [Streptomyces
            avermitilis MA-4680]
          Length = 1045

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/806 (17%), Positives = 303/806 (37%), Gaps = 56/806 (6%)

Query: 198  VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
            +   L        +   +    P+ A   + L Y  +D   +S ++ L      + R+  
Sbjct: 210  IGGSLLTLSWSLALAQAAKFDGPSVAHTALSLAYPLLDIALVSMVLALHFRRSAVNRSAV 269

Query: 258  EIALSSSLIIFLFMYLHWNRW---HAKVGYITFSGIACIAILFCMSFYYP-------MVT 307
              A+ +  +  +   L  +     + + G +  +G    ++L   + +            
Sbjct: 270  NTAIGALALTVMCDALFTSPLLHDNYRSGQLLDAGWFAGSLLLAYAPWVGVRFGQRESGH 329

Query: 308  ASIARITLASIVLYYTYFIIYHGMKGY-------------------ERAVLLIPAWILIF 348
            A +    +       +                                    + A     
Sbjct: 330  ARVVHEHVPGPRPAGSRPAGPRPPGHPGDRPRAPLQDGGHSRYPATRPIAGSLGALTPYL 389

Query: 349  IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
               +     +   L+   +   ++     +V+ +       +L     +Q +        
Sbjct: 390  AAAVCTLGILYNMLNGRNVDRVVLITAGAVVLALVVRQGIMLLDNITLTQELAQKENHFR 449

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
              V GS D++            +P  A + G  +  + G        IH  D       +
Sbjct: 450  SLVQGSSDVIMIAAPNGILRYVSPAAAGVYGRPAEDLVGT--ELASLIHPEDLRCVVHEV 507

Query: 469  DSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              F+          + E R ++    +  +   +             I  + D+TE+ + 
Sbjct: 508  RRFLAASHTEEPTTRIECRFKSGYGGWLNVESTVNRHHG------GLIFNSRDVTERVRL 561

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               +  NA  D LT +PNR  F  R+   L       +    V+ ID+D +K +ND +G 
Sbjct: 562  QAQLQHNAEHDPLTDLPNRALFTKRVQQALS-GRRTSDRGTAVLFIDLDGFKAVNDTIGH 620

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK------IADFAIAMRK 639
              GD++LV   RR+ + +++ D  +RL G+ F  +++ +    +      I + A  +R 
Sbjct: 621  QAGDELLVQAARRLQDAVRYGDTASRLGGDEFAALIVGDGTRDRTAREGHIMELADRLRV 680

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +++ P  +   ++ V ASIG A +    + + ++L+NA+LAMY AK  G   VE +    
Sbjct: 681  TLSQPYAIGGNDVRVAASIGVA-FAEPGLGAGDLLRNADLAMYRAKAAGKGRVELYAPQM 739

Query: 700  FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +       +   L  A+ + E  L++ P++ L D  I  + A  +W   +    + +EF
Sbjct: 740  QQDVVRKAELATRLRAALHDGEFALLHQPVVSLEDGRITSVTAQARWRSSQGVLFTPAEF 799

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQA 816
            + ++E+      +  ++LE                P  + + ++++ LLD  L    ++A
Sbjct: 800  LRVSEDSDKAAELGRWILEEAVEQAAERTATGLAVP--VGVRMSARRLLDRSLPLGSVEA 857

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            L+++   +   + +  S++    + +     L  LR+IG+ + LD FG+  + ++ L  +
Sbjct: 858  LLTRHGLASGALVIELSDTDPRVSLDELERRLSALRRIGVRIALDGFGSGYAAITALRRL 917

Query: 877  PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K +  L+ G  E      I   ++ +A ++    +A  +     +  L  MGC +
Sbjct: 918  PVDVLKLDRGLVEGVVESARLHKITSGLLRIASDLGLQSVADGVDLPEQVLALRAMGCTH 977

Query: 935  IQDSHVASPLGFNSILKLLKE-RFPL 959
             Q +  + PL    + + L   ++P+
Sbjct: 978  GQGTAFSGPLDEYRLRRALATGQYPV 1003


>gi|307326509|ref|ZP_07605704.1| diguanylate cyclase/phosphodiesterase [Streptomyces violaceusniger
           Tu 4113]
 gi|306887917|gb|EFN18908.1| diguanylate cyclase/phosphodiesterase [Streptomyces violaceusniger
           Tu 4113]
          Length = 702

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 210/426 (49%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD S      R  ++++D+D+++ +ND LG   GD +L+
Sbjct: 252 LRDPLTGLPNRQWLLERTWTALDESERA-GTRTALVLLDLDRFRSVNDTLGHLAGDRLLL 310

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L     +ARL G+ F ++L + ++       A  +   +  P++L    + 
Sbjct: 311 QIAERLRLALPRGAEVARLGGDEFAVLLPTTDSLTSAQRSARVLVGDLGSPLDLDGLTLV 370

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  +   R      DR+ +  DL 
Sbjct: 371 LEASAGVAVYPDHALDAEGLLRRADVAMYQAKRDRSGVELYEARRDGNTPDRLGLLGDLR 430

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  ++ L Y P +   D  + GLEAL++W HP  G +   EF+ +AE   ++  +  
Sbjct: 431 RALDAGDVDLHYQPKVGF-DGHVAGLEALVRWVHPDRGRVPPDEFISMAESSGLMPRLTE 489

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR      P  + +N++ +D+        +   +++       ++L  
Sbjct: 490 YVLETALGQVARWRADGLEVP--VAVNVSPRDVHTPGFAGAVAGRLARHGVPAGALQLEI 547

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 548 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 607

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +      
Sbjct: 608 VDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPEEAT 667

Query: 951 KLLKER 956
             L+ R
Sbjct: 668 AWLRAR 673


>gi|37676757|ref|NP_937153.1| signal transduction protein [Vibrio vulnificus YJ016]
 gi|37201300|dbj|BAC97123.1| predicted signal transduction protein [Vibrio vulnificus YJ016]
          Length = 758

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 223/451 (49%), Gaps = 11/451 (2%)

Query: 510 LRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           L + G+   I   +++++E +   A  D LTG+PNR    + + + L     +     ++
Sbjct: 312 LAFYGLVRSIANNEQQTIERLNKQATHDTLTGLPNRLYLRNNVNSWLK----NKTSPFSL 367

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D +K +ND  G   GD VL  +T+R+G       +L R + + F I+L+ E++  
Sbjct: 368 LFIDMDNFKSVNDTHGHDFGDQVLKQITQRLGSFNNDQRLLVREASDEF-ILLVKESDPA 426

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-R 687
            +   A  M   +A P  + + +  ++ S+G A + +       +L+ A+++MY AK  R
Sbjct: 427 LLKSLATTMIAKMAEPYVINDVQFLLSCSVGIAVYPTHGNDLDALLRAADISMYRAKQER 486

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              ++ +  +      +  +++ L  A+E  +L++VY P + +   ++ G+EAL++W   
Sbjct: 487 NSFNIFTTEMQEQHLYKTKVEQRLRFAIEQQKLFMVYQPQVDMA-GKLHGVEALVRWQDE 545

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    F+ +AE   ++  +  F++ER   DI S+        + + INI+ K  + 
Sbjct: 546 ELGFVPPDLFIPVAESSGLMVKLGKFIIERSVSDIASYV-LPQRQDLNLSINISVKQFIQ 604

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E +   I        RI L  +E++ + + E+ + +   + + G+ ++LDDFGT  
Sbjct: 605 QDFAEHLLTTIDTARLDRKRITLEITENLFIEDLEQFKPICNEMNQQGLKISLDDFGTGY 664

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P D +K + S +        +  ++++II + KN    ++A+ +  E+   
Sbjct: 665 SSLSMLKDLPIDELKIDKSFVDNIENDAKSFNMVKNIIAIGKNFGMAVLAEGVETELQAN 724

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +L   GCD +Q  + A PL    +   L E+
Sbjct: 725 KLAECGCDLLQGYYYAKPLNVEQLQSYLDEQ 755


>gi|117620272|ref|YP_857945.1| sensory box protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561679|gb|ABK38627.1| sensory box/GGDEF domain/eal domain protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 657

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/574 (21%), Positives = 243/574 (42%), Gaps = 34/574 (5%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +  F ++  +       Q        Q   +    D +   D     +         +G+
Sbjct: 108 VALFGMVNEIGQRKELEQTFRQQQLLQRRLLDAIPDPIRLEDHQGLLIDCNQAFLDFMGM 167

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            +    G                    L + +   RG    E+ +  A+ Q   + +   
Sbjct: 168 VASEALGQ--------------RVAHRLSTELPMGRG----EYCLVDANGQGRHLEVTRV 209

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + +  G+ L  + ++ DIT  + +   +      D+LTG+        +L+  L  S  
Sbjct: 210 DVPDDEGNSLGILTLSRDITGLRTTQAQLQQEQHYDSLTGLL-------KLSHFLQTSRH 262

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
               + +++++D+  +++IND  GI V D +L  + RR+ +L     ++ R++ + F ++
Sbjct: 263 LGARKASLVLVDLQHFREINDRFGIRVADRLLNQVARRLQQLAPPQSLVCRVAADDFAML 322

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +    +  ++  ++ ++ +P  + E  I +   +G A        +  +L +AE A
Sbjct: 323 LPELSEP--LTSWSRRLQGALMVPYQVEEHRIQIPVFLGIA--HGKANDAERLLSHAEAA 378

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI-KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           +   K +  +          +  R  +    L LA+++ +L  VY PII     ++ G E
Sbjct: 379 LAQGKRQQQHCTLFDPELDAKLKRRQLIAAQLPLAIKSGQLTAVYQPIISTRTSQLHGAE 438

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L +W HP+ G IS  EF+ +AEEL +I  +   MLE+    +  W+  A  P + + IN
Sbjct: 439 LLCRWPHPELGMISPDEFIPLAEELGLIGLLGSHMLEQGCAQLAHWQVAA--PDLVLSIN 496

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++     D ELC  + A I +   +P +++L  +E V+M N +     L  L + G  L 
Sbjct: 497 LSPLQFRDPELCPQIFACIERHGLAPWQLELEITEGVLMENADEIESNLANLIEAGFQLA 556

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKD 917
           +DDFGT    L+YL  +   T+K + S   G    +   AI+RS+I +   +   I A+ 
Sbjct: 557 IDDFGTGYCSLAYLPRLQVATLKLDRSFTQGLATNQATTAIVRSVIGLGHELGIKITAEG 616

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  +     L + GCD +Q    + PL      +
Sbjct: 617 VETQEQQAWLVQAGCDRLQGYLFSRPLPPAEFAR 650



 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 13/125 (10%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRN---WLPYIHINDRD 462
               +      ++  D     +          GL+    + G       W       D  
Sbjct: 10  LQQIIDQLPMNIFCRDTDGRYLFANRAFTEQAGLSQPADLIGKTDADMPWGDIFREEDL- 68

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                    +   +  L  +    + D    WM I   P+ +++G  +   G+ N+I ++
Sbjct: 69  -------RLLAEGKPLLYQQLHCSSGDATS-WMEIHKIPLYDTHGKPVALFGMVNEIGQR 120

Query: 523 KKSLE 527
           K+  +
Sbjct: 121 KELEQ 125


>gi|163794588|ref|ZP_02188559.1| PAS:GGDEF [alpha proteobacterium BAL199]
 gi|159180312|gb|EDP64835.1| PAS:GGDEF [alpha proteobacterium BAL199]
          Length = 507

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 115/427 (26%), Positives = 211/427 (49%), Gaps = 9/427 (2%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R++   RL   L+ +  DD     ++V++ D ++ +ND  G   GD VL    +RI   L
Sbjct: 62  RETLHRRLEAALEGARGDDGAP-ALVVLNFDNFRFVNDGFGHTTGDAVLAEAAKRIRGAL 120

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D  AR+ G+ F ++L +   +      A  +R +++ P ++  R   ++AS+G A  
Sbjct: 121 RHSDTPARIGGDEFLVLLENTGGAAPALVVAERLRTAVSQPYDIDGRRFQLSASVGIALA 180

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELY 721
                T+ E+ ++A  AM   K RGG+ VE      ++  S+R+ ++ +L  A++  E  
Sbjct: 181 PRHGRTAEELTRSATAAMSAIKRRGGDSVELPTVITTTDASERLRLESELRRALDLGEFQ 240

Query: 722 LVYHPIIRLMDEE--IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L Y P   L +    ++G EAL++WDHP+ G +  + FM IAEE  +I  I  ++L+   
Sbjct: 241 LHYQPKFSLANGTPCLIGAEALLRWDHPERGLMPPAAFMQIAEETGLIVPIGDWVLQESL 300

Query: 780 RDIISWRDQA--NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           + +  W         P+ + +N++ K        E ++  +  +   P  ++L  +ES+V
Sbjct: 301 KAVRRWNADTDSPGVPLTVAVNLSFKQFDRTGFFEFVRDSLRDSGVKPDLLELELTESMV 360

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895
           M NP+ +  ++ RLR +G+ L++DDFGT  S L  L  +P  +VK + S M     ++  
Sbjct: 361 MHNPDNTVGVMRRLRALGVRLSIDDFGTGYSSLGLLKRLPVQSVKIDRSFMQDVPVSDDD 420

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            AI  +I+ +A  +   ++A+ +  E  +  L   GCD +Q   +  P+        LK 
Sbjct: 421 TAIALAILGLAHTLGMEVVAEGVETESQLAFLRVRGCDAVQGFLLGRPMPEIEFRSTLKR 480

Query: 956 RFPLVKN 962
                ++
Sbjct: 481 PASPAES 487


>gi|251778784|ref|ZP_04821704.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083099|gb|EES48989.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 785

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 120/560 (21%), Positives = 247/560 (44%), Gaps = 25/560 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   +  + +      VW  DI    V      A    ++   + G I +   +   +
Sbjct: 244 LKNKDAKLQMLMDNLPFPVWLTDINAKYVNGNKKFADYFSVSMDELIGRIPH--EFFGED 301

Query: 460 DRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +  +     +  +  R  + + ++   +N+   + I   P+ +   +++       D
Sbjct: 302 IVKDIYSQNKEVMEAKETRKFESDIKL---NNEIRSVEIYKTPVLDIGNEVIGITSALID 358

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+ K++   I   AF D LT I NR +  D +          D     +M++DID +K 
Sbjct: 359 ITDIKEAQRKIKKQAFTDALTQISNRTALYDYMKN------ESDYSNIGMMLVDIDNFKD 412

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD V+V +   + ++      + R  G+ F  +     N   I D A  + 
Sbjct: 413 INDYYGHNFGDKVIVHVANELKKICND-AFICRFGGDEFLAVFKDVENENIICDKAEKIL 471

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I M     +  +++  +IG           + +L   +LAMY +K  G N    +   
Sbjct: 472 EKIHM-YKEHDFSVSIGIAIG-----DDISDINRLLVKVDLAMYKSKELGKNRFMKYTKE 525

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + +  ++DL  A+  +E+ + Y P   +   ++ G EAL +W   K+ N+   +
Sbjct: 526 LEAEKNLTLNIEKDLKYAIAKNEVKVFYQPQYTIE-RKLKGFEALFRWQSKKYANVPVIK 584

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            + + E   +I  +  +++    +      +      I + INI++  +++ +  + +++
Sbjct: 585 IIEVMENSNLIIDMGYYIMREACKFAKKINENRKD-KIVVSINISAIQIMEKDFIKKVKS 643

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I+KT      I +  +E+V++ N E + + +  L+ +G++++LDDFGT  S L+Y+  +
Sbjct: 644 IINKTGVYIDCIGIEITETVLVKNIEENIMKIKELKDMGVTISLDDFGTGYSSLNYIVNM 703

Query: 877 PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S ++G   K+  I  LR II  A ++   I+A+ +  E  + +L +M  DY
Sbjct: 704 PLSLIKIDKSFISGMNVKKEYIKLLRLIIASAHSLNLPIVAEGVETEEQLAKLNKMNVDY 763

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q    + P+      KLL+
Sbjct: 764 VQGFLFSKPVEEEKAFKLLE 783



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDN 463
           +    +  +  + W  D   + +    +     G     + G   +  W   +   DR  
Sbjct: 132 QFDALLNNTPFMAWFKDKDSNYIKVNNEFMEHSGKTMKQIKGNGDHYVWSGMV--GDRCR 189

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                D  V  +R ++ ++  +      F    +   P+ N   +++  IGIA DIT+ K
Sbjct: 190 ---QFDLEVMNKRTQVVFDEIIPGEKG-FKQFNMYKAPVINEFDEVIGTIGIARDITDLK 245

Query: 524 KSLEGILCNAFQDNL 538
                +      DNL
Sbjct: 246 NKDAKLQML--MDNL 258


>gi|330827759|ref|YP_004390711.1| Gaf domain/GGDEF domain/eal domain-containing protein [Aeromonas
           veronii B565]
 gi|328802895|gb|AEB48094.1| Gaf domain/GGDEF domain/eal domain protein [Aeromonas veronii B565]
          Length = 758

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 219/440 (49%), Gaps = 2/440 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +  +A  D LT +PNR   ++ L   +       +    V+ ID+D +K+IN
Sbjct: 319 QHQELERRLQFDALHDPLTQLPNRALLMNHLNHAMTHYNRYKSPGFAVIFIDVDHFKQIN 378

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG + GD +L  ++RR+   ++  D++ARL G+ F I L S  +   I+     +   
Sbjct: 379 DTLGHSAGDQLLKEVSRRLQTCIRQNDLVARLGGDEFVIYLDSSKSDDDISPVLNRIISR 438

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  LL  E+++T S+G +S +      S++L  A+LAMY AK  G + + S+     
Sbjct: 439 LSYPFRLLGNELSITVSLGVSSVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSDDCI 498

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +    +E L  A+    +   + P+IRL D  + GLE + +W   +     + +F+ +
Sbjct: 499 NQNWNSPEEMLARALREGRIVPYFQPVIRLQDSRLTGLEVMARWLTEEGILKDAFDFIPL 558

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  ++  +L    + + +W   +      + IN++ K L++++    +  +I +
Sbjct: 559 AEQCGLILELDYQILRHTCQQLKNWLPISGQGKFKVAINLSGKHLVNHDHIMRLMGIIEE 618

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +P  +   F+E  +      +   L  LR  GI ++LDDFGT  S L+ L + P D 
Sbjct: 619 EGVAPGYLIFEFNERELSRQDSDALASLHDLRAKGIQISLDDFGTGFSSLNALFHFPVDY 678

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S       + K +A++R++  + ++++ T++ + I  +  +++L  +GC   Q  
Sbjct: 679 IKVDDSFTQRMLQSPKDLALIRAMRDICQDLDYTLVVEGIENQQQLQKLIDIGCRMGQGR 738

Query: 939 HVASPLGFNSILKLLKERFP 958
           +++ P+    I+ LL    P
Sbjct: 739 YISPPMPGADIVPLLTPANP 758


>gi|119486072|ref|ZP_01620134.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456847|gb|EAW37975.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 582

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 202/439 (46%), Gaps = 7/439 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKIN 580
           ++  E +      D +T +PNR S  ++    L  S     +     +  + +D++ +I 
Sbjct: 134 QEISEQVEHQLHYDQVTELPNRLSLREQFNQRLAQSQFIASNTQMLPIFCLSLDRFNQIQ 193

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             LG    D +L +   R+ + L     LA L  N F +IL        I D A  ++  
Sbjct: 194 KNLGYNFSDQLLKAFVERVKKSLDPKIFLAYLGSNEFAMILPIVEYKTFIFDLANHIKTQ 253

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  P  +  +E+ ++ SIG A +        ++L+ A+ AMY  +  GGN  E +     
Sbjct: 254 LNQPFTVNNQEVFLSVSIGIALYEKDAQDIEKILQKAKKAMYKVQENGGNDCEFYSWVLD 313

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S R  ++ DL  A+E  EL + Y P + L   +I+G EAL +W HP +  I+   F+
Sbjct: 314 VHTSRRQRLENDLHYAIERGELSVHYQPQVSLKTGKIIGCEALARWSHPTYNMIAPDVFI 373

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE+ +I  I  ++L++  +++  W+         + +NI+   L      +     +
Sbjct: 374 PIAEEIGLIDKIGEWVLDQACKELKKWQS-CGFLSFKMAVNISVCQLNKANFRQKSINTL 432

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +   P  I+   +ES ++ +   ++  +  L  + I +++DDFGT  S L  L  +PF
Sbjct: 433 LASNILPKYIEFELTESCLVQDLVMAKQKIEALNSLDIRVSIDDFGTGYSSLKSLQNLPF 492

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K + S +          AI  ++I +A ++   ++A+ +    ++  L +  CD IQ
Sbjct: 493 NTLKIDRSFIQDVDSNPSNSAITSNLIKIAHSLGLKVVAEGVETAGELNFLKQHQCDAIQ 552

Query: 937 DSHVASPLGFNSILKLLKE 955
               + PL  + +  LL+E
Sbjct: 553 GFIFSYPLPASEMTNLLRE 571


>gi|157377107|ref|YP_001475707.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
 gi|157319481|gb|ABV38579.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
          Length = 828

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 213/436 (48%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PN+   +  L   +       + +  +M +D+D++K+IND L
Sbjct: 375 EYTCELKRLAMLDTLTGLPNKAMLMHELKKTIACVGRIHD-QVALMYLDLDEFKRINDTL 433

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +  R+   ++  D + R  G+ F I+L    +   +      +  S+  
Sbjct: 434 GHTQGDELLKIVATRLNNSVRAMDTVFRQGGDEFLILLRGIRSDQDVRKVIHKIFASLQQ 493

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P+ L   ++ VT SIG A   S  + + E++K A+LAMY AK  G ++   F        
Sbjct: 494 PVVLGNHKLIVTTSIGVAYCKSMNVRAEELIKYADLAMYQAKDAGRSNYRVFTEEMLHKA 553

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+MI++D+  A+   +L L   PI+ L D ++ G EALI+W HP+ G I   +F+   
Sbjct: 554 NNRLMIEQDIGAAIAEKQLSLFLQPIVALPDSKLKGFEALIRWFHPELGLIMPGDFIPDI 613

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  +  ++LE     +   R Q     +++ +N+++K  +D  L   +Q ++SK 
Sbjct: 614 EHSEAIIRVGNYVLEEAGAILSRLRKQ-GWEDLYMAVNLSAKHYMDPGLIPLVQHILSKY 672

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E  V+   + +   +  L+++G+ + +DDFGT  S LSYL  +PFD +
Sbjct: 673 DLPPESLLLEVTEESVIEQVDLALSAMKSLKRLGVRIAIDDFGTGYSSLSYLKQLPFDVL 732

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +     G  E      I+ ++I +A N+  T++A+ I        L    C+  Q   
Sbjct: 733 KIDRCFTAGVLEGGADTHIVTTVIDLAHNLGRTVVAEGIETPQQCDFLADAKCELAQGYL 792

Query: 940 VASPLGFNSILKLLKE 955
            + PL    +  +L +
Sbjct: 793 FSKPLEEEKVFGILNQ 808


>gi|229593072|ref|YP_002875191.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
 gi|229364938|emb|CAY53042.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 701

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/574 (20%), Positives = 248/574 (43%), Gaps = 17/574 (2%)

Query: 392 ATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                 Q +  D E         +  + + +             P I+ +L      + G
Sbjct: 134 RNRRALQRLSHDLESARAFNASVLDNAAEGILVVSEEGVIEYANPAISRLLNATMDELQG 193

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSN 506
               +L ++       +               + ++  +R    Q   + +   P+    
Sbjct: 194 Q--EFLSFLQKPHVPAWLESQMYAGYRDGETWRLHDAILRTGRGQQVPVALSCAPLPAEQ 251

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +    D++E +   + +   A  D LTG+ NR+ F   +   L  S   +    
Sbjct: 252 ---KAMVVTVLDMSEVRHLHQQLEFQAVTDPLTGLLNRRGFYQAVENTLLRSERVEQ-SL 307

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K++ND LG   GD VL  ++ ++   L+  DIL R+ G+ F  +L     
Sbjct: 308 VLLYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLQGCLRSYDILGRMGGDEFTALLE-LEF 366

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             + A  A  + + +++   +   ++ +  SIG A++       + +L+ A++AMY AK 
Sbjct: 367 PEQAAKIAEKLIERVSICQQVEGLDVMLGVSIGIATFPDCGSDLNGLLRAADIAMYEAKR 426

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      +          R+M+++ +  A++N +  LVY P + L D  + G+EAL++W
Sbjct: 427 AGRQQYRYYDQEMNGRARSRLMLEDSVRTAIQNKDFTLVYQPQVSLADGRLRGVEALLRW 486

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G++    F+ + EE  +I  ++ ++ +++A   ++W+       + + ++++S  
Sbjct: 487 QHPSVGDVPPGLFLPLLEEARLISQLSSWIYQQVAAQRLAWQATF-DQELVLSVSLSSHQ 545

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L   +Q +  +      ++++  SE  +  N E S   L  LR+IG+ + LDDFG
Sbjct: 546 FNMPNLAAQLQQVFERHGLQGRQLEVEISEDSLTSNLEESGKQLKLLRQIGVRIALDDFG 605

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +    L++L  + FDT+K +  L+     + +   + RSII +  + +  ++A+ +    
Sbjct: 606 SGNCSLAHLRDLAFDTLKLDPQLIARLPGSARDAVMARSIIELCGHFDVLVVAEGVETSE 665

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + L   GC YIQ    A P+    ++   + R
Sbjct: 666 QAQWLKANGCAYIQGPWAAQPMVAEDVVDWSRAR 699


>gi|222087155|ref|YP_002545690.1| GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221724603|gb|ACM27759.1| GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 738

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/511 (24%), Positives = 239/511 (46%), Gaps = 15/511 (2%)

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           L  +  + +  +   +   +G   GRL +  R    D  +      +       G     
Sbjct: 223 LRLVPPDTQARYAVSIVDPLGKSLGRLVWNSRG-PGDTSYQQARPLVLGALGLVGMFFVV 281

Query: 513 IGIANDITEQKKSLEGILCN--AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           + I   +  ++   E  L    + +D L+G+ NR+     +  ++D +  D +    ++ 
Sbjct: 282 LLILGSLAGRRLRAEEALARQGSLRDRLSGLLNREGLRLDVDRLVDSARADGS-NVLLLY 340

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629
           +D+D +K+IND  G   GD ++ S+   +  L+     LARL G+ F I   S   +   
Sbjct: 341 LDLDGFKEINDAYGHGTGDQLIRSVAAGLNVLIPPNATLARLGGDEFAIAFPSRELNHAP 400

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +   ++ P+ +  R I V ASIG AS    +I   E+++ A+LAMY AK  G 
Sbjct: 401 ALRLAEQVLDFLSEPLEIGRRVIVVGASIGIASSPEGRIDREELVRRADLAMYKAKEAGR 460

Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             +  +   + + R +R  ++ DL  A++  EL + Y P++  +  +I G+EAL++W+ P
Sbjct: 461 ARMICYETAMDTDREERNALELDLRNAIDRQELTVAYQPLVDAVSHDITGVEALVRWNRP 520

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +G +S   F+ IAE   +I+A+ L +L +       W      P + I +N++     +
Sbjct: 521 GYGPVSPDAFIPIAETSGLIEALGLLVLRKACAAARQW------PDLRIAVNVSPGQFRN 574

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               + ++ ++        R+ L  +E  ++ NPER+R  + RL+K+G+ + LDDFG+  
Sbjct: 575 PAFADYVRHVLKDAEIEAERVTLEITEGYMIQNPERTRQSIERLKKLGVKVALDDFGSGF 634

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S + YL    FD +K + SL     +  +   +L++ + +A++++  + A+ I  E    
Sbjct: 635 SSIGYLRQFGFDRIKIDRSLTMDVLTDSRSRDMLQATVALARSLDLPVTAEGIETEEQGT 694

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L   GCD +Q      P+    I + L  +
Sbjct: 695 ALKLFGCDELQGYFFGKPMPEAEISRRLAAQ 725


>gi|170728462|ref|YP_001762488.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813809|gb|ACA88393.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 826

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 218/436 (50%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PN+   +  L   +       + +  +M +D+D++K+IND L
Sbjct: 373 EYTAELERLAMLDALTGLPNKAMLMHELNKTIACVGRIHD-QVALMYLDLDEFKRINDTL 431

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +  R+   ++  D + R  G+ F I+L    +   +      +  ++  
Sbjct: 432 GHTQGDELLKIVATRLNNSVRAMDTVFRQGGDEFLILLRGIRSDQDVRKVIHKIFSALQQ 491

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P+ L   ++ VT SIG A   S  + + E++K A+LAMY AK  G ++   F        
Sbjct: 492 PVALGNHKLIVTTSIGVAYCKSMNVRADELIKYADLAMYQAKDAGRSNYRVFTEDMLLKA 551

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++++MI++D+  A+E  +L L   PI+ L D ++ G EALI+W HP+ G I   +F+   
Sbjct: 552 NNKLMIEQDIGAAIEERQLSLFLQPIVGLPDAKLKGFEALIRWFHPQRGLIMPGDFIPNI 611

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  +  ++LE     +   R Q     +++ +N+++K  +D  L   +Q +++K 
Sbjct: 612 ENSEAIIQVGNYVLEEGGAMLSRLRKQGWN-DLYLAVNLSAKHYMDPGLIPLVQHILAKY 670

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +E  V+   + +   +  L+++G+ + +DDFGT  S LSYL  +PFD +
Sbjct: 671 ELPPQSLLLEVTEESVIEQVDLAMSSMKSLKQLGVRIAIDDFGTGYSSLSYLKQLPFDVL 730

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +    +   +      I+ ++I +A N+  T++A+ I  +     L  MGC+  Q   
Sbjct: 731 KIDRCFTSEVLNESVDSHIVSTVIDLAHNLGRTVVAEGIEVQEQADCLAEMGCELAQGYL 790

Query: 940 VASPLGFNSILKLLKE 955
            + PL  + I ++L  
Sbjct: 791 YSKPLDEDKIFQILNR 806


>gi|320158857|ref|YP_004191235.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Vibrio vulnificus MO6-24/O]
 gi|319934169|gb|ADV89032.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Vibrio vulnificus MO6-24/O]
          Length = 758

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 224/451 (49%), Gaps = 11/451 (2%)

Query: 510 LRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           L + G+   I   +++++E +   A  D LTG+PNR    + + + L     +     ++
Sbjct: 312 LAFYGLVRSIANNEQQTIERLNKQATHDTLTGLPNRLYLRNNVNSWLK----NKTSPFSL 367

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D +K +ND  G   GD VL  +T+R+G       +L R + + F I+L+ E++  
Sbjct: 368 LFIDMDNFKSVNDTHGHDFGDQVLKQITQRLGSFNNDQRLLVREASDEF-ILLVKESDPA 426

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-R 687
            +   A  M   +A P  + + +  ++ S+G A + +       +L+ A+++MY AK  R
Sbjct: 427 LLKSLATTMIAKMAEPYVINDVQFLLSCSVGIAVYPTHGNDLDALLRAADISMYRAKQER 486

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              ++ +  +      +  +++ L  A+E  +L++VY P + + D ++ G+EAL++W   
Sbjct: 487 NSFNIFTTEMQEQHLYKTKVEQRLRFAIEQQKLFMVYQPQVDM-DGKLHGVEALVRWQDE 545

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    F+ +AE   ++  +  F++ER   DI S+        + + INI+ K  + 
Sbjct: 546 ELGFVPPDLFIPVAESSGLMVKLGKFIIERSVSDIASYV-LPQRQDLNLSINISVKQFIQ 604

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E +   I        RI L  +E++ + + E+ + +   + + G+ ++LDDFGT  
Sbjct: 605 QDFAEHLLTTIDTARLDRKRITLEITENLFIEDLEQFKPICNEMNQQGLKISLDDFGTGY 664

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P D +K + S +        +  ++++II + KN    ++A+ +  E+   
Sbjct: 665 SSLSMLKDLPIDELKIDKSFVDNIENDAKSFNMVKNIIAIGKNFGMAVLAEGVETELQAN 724

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +L   GCD +Q  + A PL    +   L ++
Sbjct: 725 KLAECGCDLLQGYYYAKPLNVEQLQSYLDDQ 755


>gi|255527024|ref|ZP_05393915.1| diguanylate cyclase/phosphodiesterase [Clostridium carboxidivorans
           P7]
 gi|296186974|ref|ZP_06855374.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
 gi|255509280|gb|EET85629.1| diguanylate cyclase/phosphodiesterase [Clostridium carboxidivorans
           P7]
 gi|296048412|gb|EFG87846.1| diguanylate cyclase (GGDEF) domain protein [Clostridium
           carboxidivorans P7]
          Length = 638

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 211/435 (48%), Gaps = 7/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVMVIDIDKYKKINDVLG 584
            E I   A+ D +TG+PN++ F       +  S+  +N+ + ++M++ ++ +K +ND LG
Sbjct: 194 REEIKSLAYNDAVTGLPNKRIFYKIFNAKILESSLKENVSKGSLMILGLNNFKNVNDTLG 253

Query: 585 IAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
              GD +L     ++ + LL     + +   ++F + + S      + D    + +    
Sbjct: 254 YDFGDRILKICGDKLKKILLNDEAYIFKFESDKFLVFIPSIKEDTFLIDVVERILQIFKE 313

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
             ++   +I +T SIG   +  +   +  ++KNA+ AMY AK  G N    +   +S   
Sbjct: 314 QWSIERYKILITVSIGVHIFNYTDSNTETIIKNADSAMYKAKEAGLNKYVFYDKAISEAL 373

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ I+  L  A+EN E +L Y P + + + +I G EAL++W+  + G +S +EF+ IA
Sbjct: 374 ERKIKIENCLNKALENEEFFLCYQPQVNVFNNQIEGFEALLRWNSKELGFVSPAEFIPIA 433

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  I  ++++       +W ++       I +NI++  L   +    +++++ +T
Sbjct: 434 EETGLIIPIGRWVIKTACIQNKNWSEKNYKFD-HIAVNISAVQLQQLDFVNIVKSILEET 492

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                  ++  +ES ++ +   +   L  LR IG+ + LDDFGT  S L+YL  +P + +
Sbjct: 493 GIRAESFEIEITESTLIKSLNLNIKKLEELRAIGVKVALDDFGTGYSSLNYLKMLPVNRI 552

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +           I+ +++ +   +   I+A+ +  E  ++ L    CD IQ  +
Sbjct: 553 KIDKSFIDDICTGANEEIIIEALVFLGHKMNLDIVAEGVELEEQVEILKSKKCDKIQGYY 612

Query: 940 VASPLGFNSILKLLK 954
            + PL       +LK
Sbjct: 613 FSKPLKKLDAENILK 627


>gi|103487590|ref|YP_617151.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
 gi|98977667|gb|ABF53818.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
          Length = 570

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 225/467 (48%), Gaps = 6/467 (1%)

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             +   I P+     D   ++    D T++  +   +      D+LTG+PNR  F + + 
Sbjct: 99  RDLRGHIGPLPTETDDDGLFLLTLIDRTQEMMTERNLRRELVSDSLTGLPNRAGFEELVE 158

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
                          ++++D+ ++ +IN+ +G   GD++++++ RR+   L+  DILAR 
Sbjct: 159 Q--RAHRDAPGADHAILLLDLARFSRINEHIGPMAGDELIITVARRLKSSLRSGDILART 216

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I          + + A  +R     P  + E +++V  ++G +   +S+I  + 
Sbjct: 217 GGDEFAISTRIAGGRADVREMARRIRGCFDHPFRIGELKVSVDCALGCSIQPTSEIDVAN 276

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            +++A++A+  AK      +     +    +R  ++ +L  A+E   L+L + P+I +  
Sbjct: 277 QIRHAQIALKRAKQTDRIEIYEPEAAMLSDNRFGLETELRNAIEEDRLHLAFQPLIEMAS 336

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             + G EAL +WD+     +S +EF+ IAE+  +I  +  + + + A  +  W  Q    
Sbjct: 337 GRVAGFEALARWDNSSGVAVSPTEFIPIAEDSGLIVPLGQWAIGKAAAVLADWDRQNGGQ 396

Query: 793 PI--FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            +  +  +N+++  L+ +++   ++  + K      R+ +  +ES ++G+P+ +  +L  
Sbjct: 397 VVNAYFSVNVSAIQLVRDDVAGVVRQALQKHGIGGERLMIELTESAIIGDPDLALSVLRE 456

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+ +   + +DDFGT  S L+YL  +P D +K + S +        ++AI+R+I  +A+ 
Sbjct: 457 LKALDARVAMDDFGTGYSNLAYLQRLPIDVLKIDRSFVEHMVDDRDKVAIVRTIQSLAEV 516

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +     A+ +      + L+ +GCD+ Q    A P+   + L   ++
Sbjct: 517 LGMKTTAEGVETTDQARLLSALGCDFGQGYLFARPMDGKAALDYWRQ 563


>gi|282861258|ref|ZP_06270323.1| diguanylate cyclase/phosphodiesterase [Streptomyces sp. ACTE]
 gi|282563916|gb|EFB69453.1| diguanylate cyclase/phosphodiesterase [Streptomyces sp. ACTE]
          Length = 724

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 214/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T L+ +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 265 LRDPLTGLPNRQWLLERTWTALEEAEVT-GARAALVLIDLDRFRAVNDTLGHLAGDRLLL 323

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L + +++      A  +   ++ P+ L    + 
Sbjct: 324 QIAERLRLALPRGAEAARLGGDEFAVLLPTTDSTTSAQRVARHLVAELSSPLGLDGLTLV 383

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A      + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 384 LEASAGVAVHPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 443

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 444 RALDAREVELHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 502

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 503 YVLETALAQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 560

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 561 TEHVLLEDPQRAADTLAGLTAHGVKMSLDDFGTGYSSLVHLRKLPVSELKIDRSFVARLA 620

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  I +A ++   ++A+ +  +   + L  + CD +Q   VA+ +      
Sbjct: 621 VDTEDAEIVRCTIDLAHSLGLLVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPQETT 680

Query: 951 KLLKER 956
             L+ R
Sbjct: 681 AWLRAR 686


>gi|119469527|ref|ZP_01612431.1| putative orphan protein ; putative GGDEF protein [Alteromonadales
           bacterium TW-7]
 gi|119447062|gb|EAW28332.1| putative orphan protein ; putative GGDEF protein [Alteromonadales
           bacterium TW-7]
          Length = 789

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 113/450 (25%), Positives = 225/450 (50%), Gaps = 7/450 (1%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPT 567
           + R I +A D   ++ + + +   A  D LTG+ NR   ++R+   +             
Sbjct: 342 VSRQISMAID---RQLARQELEHKALHDGLTGLANRSLLIERIKHAILRLTRVKKGTVHA 398

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D D++K IND LG  VGD  L+ +   I   ++  D  +RL G+ F I++ +  + 
Sbjct: 399 LLYLDFDRFKSINDALGHEVGDHFLIKICELIKGTVRNTDTFSRLGGDEFAILMENITHR 458

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ +    ++++++ PIN+    +  + SIG A        +  +L+ A+ AMY AK  
Sbjct: 459 NQVKEALGRIKEALSKPINVDGHLLQASTSIGIAYTDDVDDKAYLLLQQADAAMYEAKST 518

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G   V+ F  +  +       I+ DL   +E++E  L + PI  ++D  ++G EAL++W 
Sbjct: 519 GRGQVKFFNNTMRKKLKTHADIENDLQHGIEHNEFELYFQPIFTILDNHVIGFEALVRWH 578

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HPK G +S ++F+ IAE+   I  ++L +L+  A+ I  W  Q +   + + +N++S+  
Sbjct: 579 HPKKGFVSPNDFIPIAEKTGQIINLDLHLLDLAAQHISKWHQQGHRF-LKVTVNVSSRHF 637

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +    + A+ +K       + L  +ES ++ N E +  ++  L  + + L LDDFGT
Sbjct: 638 ASLDFVAQVHAIYNKYQLPLGSLCLEITESGLIENLELATQIIEGLSPLKVKLCLDDFGT 697

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             S L YL  +P   +K + S +    +    ++ +I+ +AK+++  ++A+ I     ++
Sbjct: 698 GYSALGYLHQLPIHILKIDKSFIDHVQDSTNPLVEAILSLAKSLKLEVVAEGIETTGQLE 757

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L    C+Y Q   ++ P+     + L+ +
Sbjct: 758 TLQTTHCEYGQGYLMSKPVPAKEAILLINQ 787


>gi|117617601|ref|YP_858659.1| GAF domain/GGDEF domain/EAL domain-containing protein [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559008|gb|ABK35956.1| gaf domain/GGDEF domain/eal domain protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 761

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 214/437 (48%), Gaps = 2/437 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +  +A  D LT +PNR   ++ L   +       +   +++ ID+D +K++N
Sbjct: 319 QHQELERRLQFDALHDPLTQLPNRALLMNHLNHAMTHFHRYKSPGFSLIFIDVDHFKQVN 378

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG + GD +L  ++RR+   ++  D++ARL G+ F I L +      I+     +   
Sbjct: 379 DTLGHSAGDQLLKEMSRRLQTCIRQNDMVARLGGDEFVIYLDNSKTEEDISPVLNRIISR 438

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  L+  E+ +T S+G AS +      S++L  A+LAMY AK  G + + S+     
Sbjct: 439 LSYPFRLMGNELGITVSLGVASVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSEECS 498

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                  +E L  A+    +   + P+IRL D  + GLE + +W   +     + +F+ +
Sbjct: 499 VQTWASPEEMLARALREGRIVPYFQPVIRLKDSRLTGLEVMARWITEEGVLKDAFDFIPL 558

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I+ ++  +L    + +  W   +      + IN++ K L+ +E    +  +I  
Sbjct: 559 AEQCGLIQELDYQILSHTCQQLKEWLPLSGQSKFKVAINLSGKHLVSHEQIMKLVEIIES 618

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +P  +   F+E  +      +   L  LR  GI ++LDDFGT  S L+ L + P D 
Sbjct: 619 EGIAPGYLIFEFNERELSRQDSDALTSLHELRAKGIQISLDDFGTGFSSLNALFHFPVDY 678

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S       + K +A++R++  + ++++ T++ + I  +  +++L  +GC   Q  
Sbjct: 679 IKVDDSFTHRMLQSPKDLALIRAMRDICQDLDFTLVVEGIENQQQLQKLIDLGCLMGQGR 738

Query: 939 HVASPLGFNSILKLLKE 955
           +++ P+    I  LL +
Sbjct: 739 YISPPMPGADITPLLTQ 755


>gi|118462879|ref|YP_880384.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Mycobacterium avium 104]
 gi|254774008|ref|ZP_05215524.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118164166|gb|ABK65063.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Mycobacterium avium 104]
          Length = 617

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 113/450 (25%), Positives = 200/450 (44%), Gaps = 7/450 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +  + E +   A  D+LTG+ NR++ +  LT  L      +     V  +
Sbjct: 154 VAALFAQLQARIAAEERLRYLAEHDDLTGVYNRRALVAHLTERLA---AGNPGPVAVFYL 210

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +    +RI E      ++ARL G+ F +I      S    
Sbjct: 211 DLDRLKPINDYLGHTAGDWFIRVFAQRIEECAGEQSMIARLGGDEFVVIPHQPMASEAAE 270

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   +   + +    I+ T SIG A  T      +++L+ A+ A+  AK  GGN 
Sbjct: 271 AFARRLSTLLCDRLTIGGHVISRTVSIGLAVGTPGADNCTDLLRRADEAVLTAKRAGGNQ 330

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
                            I+  L   +E+  L L Y P + L    +VG EAL++W HP W
Sbjct: 331 TAVSTDDMSLKRAFRNDIELHLQGDIESEGLLLHYLPEVDLWTGAVVGAEALVRWRHPIW 390

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+ +AE   +   +  +++     D   WR         + IN++   L+   
Sbjct: 391 GLLLPDSFIGVAESTNLGAELGGWVMRSACADFSRWRANGVGHGAMLRINVSPIQLISRG 450

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +   I +       + L  +E  V+ + E +R  L  L+++G+ + +DDFGT  ++
Sbjct: 451 FVETVADTIGEFGIDAGSVCLEITERAVVHDTETTRKTLSELKEVGVQIAIDDFGTGYAV 510

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P D +K +   +   G+    +AI+R+II +A+     ++A+ +        L
Sbjct: 511 LSHLKSLPVDMLKIDAGFVREVGTDAGDLAIVRAIIGLAEAFGLEVVAEGVETPAAALTL 570

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            + GC   Q   ++ P+   ++  LL  R+
Sbjct: 571 MQHGCHRAQGFLLSRPIPGEAMEALLSARW 600


>gi|166712017|ref|ZP_02243224.1| GGDEF family protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 694

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 212/432 (49%), Gaps = 7/432 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR    + L   ++ +      R  VM+I++D +K IND  G A+GD +LV 
Sbjct: 263 HDPLTRLPNRILLHEHLVQNIERAQRQGQ-RFAVMLINLDGFKVINDGYGHALGDRLLVV 321

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+    +    LARL  + F  ++    +    A  A  + +++A+P  +   E+ +
Sbjct: 322 VAERLNTHRRAHGSLARLGADEFV-LVADIADPEDAAALAAHLVQALAVPFLVANHELRL 380

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLC 712
           ++ IG A +     +  ++L +A+ AM HAKH G N    F  S      DR+ + ++L 
Sbjct: 381 SSRIGIALYPEDAGSEHQLLTHADAAMTHAKHAGRNRYSFFERSMTATTRDRLQLLQELP 440

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P     D   +G EALI+W HP+ G +    F+ +AE   MI  +  
Sbjct: 441 RALELGQFVLHYQPKYCAEDGRPIGAEALIRWQHPERGLVPPDSFIPLAERSGMIGLLGS 500

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L +  R +  WR   +     + +N+++  L    L + + + +S+ + +P ++ L  
Sbjct: 501 WVLRQACRQMHDWRAAGHG-DWRVAVNLSAIQLASPSLLDEVASTLSEFMLAPGQLTLEI 559

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +E++ M + E     LG+L  +G+ + +DDFGT  S L YL  +P   +K + S +    
Sbjct: 560 TETMAMHDAEACLRTLGQLNALGVHIAIDDFGTGYSNLLYLRKLPAHELKIDRSFVQAMD 619

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           S+ + IAI+ +++ +A  +   ++A+ +        L R+GCD +Q   +  P+     +
Sbjct: 620 SSAEDIAIVAAVVALAHTMRLQVVAEGVETIAQRNTLERLGCDQLQGYLLGRPMDAERFI 679

Query: 951 KLLKERFPLVKN 962
             +  +    + 
Sbjct: 680 ATVVAQRDGTRR 691


>gi|294631530|ref|ZP_06710090.1| sensory box/GGDEF family protein [Streptomyces sp. e14]
 gi|292834863|gb|EFF93212.1| sensory box/GGDEF family protein [Streptomyces sp. e14]
          Length = 433

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 214/418 (51%), Gaps = 7/418 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R+ T LD        R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 1   MRDPLTGLPNRQWLLERIWTALDDPERAGG-RAALLLIDLDRFRSVNDTLGHLAGDRLLL 59

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+ + L      ARL G+ F ++L   +++      A  +  +++ P++L    + 
Sbjct: 60  QIADRLRQALPRGAEAARLGGDEFAVLLPVADSTTSATRIARQLVTALSSPLDLDGLTLV 119

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 120 LEASAGVAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 179

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 180 RALDAHEVQLHYQPKVRF-DGQVAGLEALVRWVHPERGKVPPDEFIAIAESSGLMPHLTE 238

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 239 YVLETALGQVARWRAQGLFTP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 296

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 297 TEHVLLEDPQRAADTLAGLTAHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 356

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +   I+R  + +A ++   ++A+ +  +   + L  + CD +Q   VA+ +    
Sbjct: 357 VDAEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPEE 414


>gi|119776293|ref|YP_929033.1| response regulator [Shewanella amazonensis SB2B]
 gi|119768793|gb|ABM01364.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 576

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 212/436 (48%), Gaps = 7/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++S E +   A  D+LT + NR  F   L   L        +  +V+++D+D +K +N
Sbjct: 128 ALRRSHEKLRELAEHDSLTRLVNRYGFELCLNRALSQVRRTGGM-LSVILLDLDDFKGVN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +LV +  R+   L+  D++AR+ G+ F  ++  ++      D A  +  +
Sbjct: 187 DTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLAKRLLST 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  L +  + + AS+G A +     T+ ++LK A++AMY AK  G N ++ + +   
Sbjct: 247 FEEPFQLGDSAVMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQFYSLDLE 306

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +    I++ L LA+ N+EL L Y      +   + G+E L++W HP  G ++   F+
Sbjct: 307 NEVKRRTRIEQGLRLALSNNELVLYYQGKFDALSGYLSGVEVLLRWQHPTDGLLAPDTFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQA 816
            IAE++ + + I  ++L    + +  W  Q     P   + +N ++  +    L   ++ 
Sbjct: 367 SIAEDVGLTEQIGKWVLNTACQQVSLWLKQIGQYLPGFSVAVNFSASQISAVNLVSVIEH 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++++      ++L  +E+ ++ NPE    +L R+  +G+++ LDDFGT  S L +L + 
Sbjct: 427 ALAESGLPAHNLELEITENALIKNPEEIASVLDRIESMGVTMALDDFGTGYSSLEHLMHF 486

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + SL+      EK   +L +++  A+      +A+ I  +      T  GC+ 
Sbjct: 487 PIQVIKIDKSLVATVPQDEKGCRLLTALLNFAQGFGMVSVAEGIETQAQADFCTDHGCNL 546

Query: 935 IQDSHVASPLGFNSIL 950
           +Q   +  P+   +  
Sbjct: 547 LQGYLLGKPVDAKTFE 562


>gi|239809508|gb|ACS26229.1| unknown [uncultured bacterium pJM6]
          Length = 718

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 200/436 (45%), Gaps = 7/436 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +    +      D LTG+ NR      L + L  S    +    ++ ID+D +K +ND
Sbjct: 249 LHQLNCQLEHQVHFDPLTGLANRTQIDACLQSCLQYSRLHQH-PFALVFIDLDLFKVVND 307

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  +GD +L++ T+RI   L     LARL G+ F +++ + +    I++    +   I
Sbjct: 308 TWGHHMGDQLLIASTQRIYTCLDDTMTLARLGGDEFMLLVPN-SGREAISNLLSRIANVI 366

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  L    + V+ S G + +     T  E+   A++AMYH K  G N    +      
Sbjct: 367 KEPFTLCGHSLRVSLSAGSSIYPEHGATLHELKVKADMAMYHVKQAGRNGWAIYTPDMEA 426

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                    ++L  A+E ++  L Y P     D  + G EAL++W HP+ G +  +EF+ 
Sbjct: 427 IADTPPTFLQELSQAIERNQFELWYQPKYTAGDHTLTGFEALLRWHHPERGMLLPAEFLP 486

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             EE  +I  +  +++ +    +  W  Q       + +N++S     +++ + +   ++
Sbjct: 487 ALEETGLIIPVGDWVIHQACFQLHQWASQ-GHSQWTLAVNLSSAQFEQHDIVDIVCNALA 545

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP ++ L  +ES  + N + S  +L     +GI++++DDFGT  S +  L  +P  
Sbjct: 546 QYQLSPIQLTLELTESTALKNLKHSVDVLNAFSALGITISIDDFGTGYSNILMLKSLPAR 605

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +   +E      I+ +II +A ++   ++A+ I        LT+MGC  +Q 
Sbjct: 606 ELKIDRIFVKDISENSKNTKIVSTIIDIAHSMNMCVVAEGIETHEQEILLTQMGCRVLQG 665

Query: 938 SHVASPLGFNSILKLL 953
              A PL  + I +L+
Sbjct: 666 FLFAKPLPAHQINELM 681


>gi|148554415|ref|YP_001261997.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
 gi|148499605|gb|ABQ67859.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
          Length = 741

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 13/433 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +       A  D LTG+ NR  F  RL   L            ++ +D+D +K +ND L
Sbjct: 309 AAKSQAQHLADHDPLTGLANRALFERRLNERLGEICLTGET-LALVYVDLDHFKNVNDHL 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD ++ +L   + EL    D++ARL G+ F II  S+N++      A ++ +++A 
Sbjct: 368 GHPTGDQLIRALADILSELA-PGDVVARLGGDEFAIIHGSDNSAATAEQLARSIHRTLAR 426

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           PI+L   E+ + ASIG A      +   E+++ A++A+Y AK  G      +  +     
Sbjct: 427 PIDLGNGEVLIGASIGVAVAPQDGLDRVELVRKADIALYDAKRGGRRRHSFYADTMGERI 486

Query: 702 SDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            DR  I+ +L  A+   E L + Y P        ++G EALI+WDHP  G +  ++F+ +
Sbjct: 487 RDRHEIEAELREAMRTGEGLDIAYQPYFAAKSGLLLGAEALIRWDHPVRGRMLPAQFVPV 546

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ +  ++LE+       W          I +N+++  L +  L E + A++ +
Sbjct: 547 AEECGLIETLGEWVLEQACLVAARWPAG------TISVNLSAMQLRNPALAERVYAILRR 600

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  SPSR++L  +E+  + + E+ R  LG LR IG+ + LDDFGT  S   +L     D 
Sbjct: 601 TRLSPSRLELEITETSFVDSSEKCRANLGWLRDIGVRIALDDFGTGYSSFRHLRGFEVDR 660

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S ++     +    ++++I+ +A+       A+ +  E   + LT +GCD +Q  
Sbjct: 661 IKIDRSFVSTIQPGQAGSPVIQAIVDLARLSGLETTAEGVETEQQRRFLTSIGCDVLQGF 720

Query: 939 HVASPLGFNSILK 951
            +A PLG  ++  
Sbjct: 721 LLAEPLGATAVEA 733


>gi|160879285|ref|YP_001558253.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium phytofermentans ISDg]
 gi|160427951|gb|ABX41514.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium phytofermentans ISDg]
          Length = 799

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/642 (19%), Positives = 245/642 (38%), Gaps = 21/642 (3%)

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP--ALVGGLVL 377
           +       Y     +     ++ A +++ +  +     + + +   +I+   A    LV 
Sbjct: 154 VAGYCSRSYERAVKFLSFSTVVIAILILLVAMVISIYLLNRWITKPLIKLHKATKDILVN 213

Query: 378 IVILIGFTVIQHVLATGYFSQGIFS----------DGERQSLAVLGSGDIVWDWDIVRDR 427
            +  +    I      G  +                       +    D +   D     
Sbjct: 214 GMEGVSKVEIDQKDEIGKLADSYNQMIDFIGQSTVSKSYLRNVISNISDALVVADADFCI 273

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
            T       + G +   + G     +       ++       + +   R    YE  +  
Sbjct: 274 ETVNEATKKMFGYSKEELVGSS---VSIFFPQIQEQVIEHWKNTIITHRQYSDYEVIIHT 330

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            +     ++I    M+  N   + ++ IA DI+E+KKS E I   A  D LTG+ NR + 
Sbjct: 331 KEKNAIPVLISSTVMTEDNSGQVHFVCIAKDISERKKSEESIRYQANHDMLTGLSNRYAL 390

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              +    ++           + +D+DK+K +NDV G   GD+++  LT  + + L+  D
Sbjct: 391 EKEIQACSNMILLYPEEMSMFLFLDLDKFKIVNDVCGHHAGDELIKHLTLMMKQNLREQD 450

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            LAR+ G+ FG++L   +    +                  E+  T+  SIG        
Sbjct: 451 TLARIGGDEFGVLLNGISQVEGLEIAENLCETVKKFRFVWEEKVFTLGVSIGAVIINRDL 510

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLV 723
              S+++  A+ A Y +K  GGN V+ F  S         +      +  A E +   LV
Sbjct: 511 YEVSKVISAADQACYISKENGGNRVQLFSESEQEFSLREEEMQVMPSITKAFEENRFLLV 570

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y  I+R+ D+ + G EALI+    +   +S   F+  A+    +  I+ +++    ++  
Sbjct: 571 YQDIVRVSDKVLSGYEALIRLKDEQGQLVSPGTFLPAAQRYNKLTDIDRWVITNFCKNYD 630

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
             +  +        INI++  +      E +     +    P R+    +E+  + N  +
Sbjct: 631 FHQIGSIENDFIYNINISATSINAEGFLEFICHQFEEHQVPPQRVCFEITETSAVSNFVK 690

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901
           ++  +  L+K+G    LDDFG+  S  +YL Y+P D +K +G ++          A++ S
Sbjct: 691 AKEFIQELKKLGCRFALDDFGSGLSSFTYLKYLPVDYIKIDGIIVNDIDTNKIDYALVSS 750

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           I  +A  +    IA+ +  E     L  +G DY Q   +  P
Sbjct: 751 INEIAHLMGMKTIAEYVENEDIFNCLREIGVDYAQGFWLGEP 792


>gi|325832787|ref|ZP_08165550.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325485926|gb|EGC88387.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 885

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 219/545 (40%), Gaps = 23/545 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++          +     L S  +      W   +H +D+  F  
Sbjct: 345 YDALVESTDDYLYVCNMRTGVFRYPRAMVEEFDLPSEVVENAAAVWGSKVHPDDKQAFLE 404

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   R  R   E+R      ++  +  R R + ++ G  L + G   ++ ++ K  
Sbjct: 405 SNQEVADARTTRHWVEYRAINRKGEWVRLRCRGRLILDAKGKPLLFAGFITNLGKKSKV- 463

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D LTG+ N+  F D +   ++      + R ++MV+ ID  + IND    A
Sbjct: 464 ---------DPLTGLFNKFEFEDDVRRRMETMQ---SARISLMVLGIDDLRHINDRYDRA 511

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+V+  + +RI   L     + RL G+ F +  I +++   +      +        +
Sbjct: 512 FGDEVIRFVAQRIQSSLPEDARVYRLDGDEFAV--IVDDDVDVLRSAYAQLGGMFQRQHD 569

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              R+   T S G A +     T   ++K A  A+ HAK  G     +F           
Sbjct: 570 HEGRKFYCTLSGGIAQYPGDAETYESLVKYANYALEHAKGHGKKRCVNFSQPILAERVRE 629

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  E L  +VEN      L Y P +      +VG EAL +W   ++G++S  EF+ + E
Sbjct: 630 LELMELLRDSVENGFKGFSLCYQPQVEAATGCVVGAEALARWRCDEYGDLSPLEFIPLLE 689

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L+        WR     P   + +N++ + L ++ L   +   + +  
Sbjct: 690 ESGLIVPVGTWVLQHAVDTCKRWRKAI--PSFTMSVNLSYRQLDEDGLVPLIVDTLREAE 747

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + +  +ES    + + +  L  +LR  G+ + +DDFGT  S L  L   P D VK
Sbjct: 748 LPPESLVVEMTESRFADDAQVTHELFDQLRMQGVRVAMDDFGTGYSSLGVLKTSPADIVK 807

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +     +      ++ ++ +   +  ++  + +    + + +  MG DYIQ    
Sbjct: 808 IDRAFIRDIQTSTFDATFIKFVVELCHAVGISVCLEGVETNEEYEVVGGMGLDYIQGFLF 867

Query: 941 ASPLG 945
             PL 
Sbjct: 868 GRPLP 872



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 98/283 (34%), Gaps = 24/283 (8%)

Query: 410 AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            + G    ++  D   DR+      +    G+      G +                 +L
Sbjct: 47  VLEGMRTSIYVTDPKTDRILYMNGFMKHDYGVEDPE--GKVC--------------WQVL 90

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND---ITEQKKS 525
              +  R      +  +   D           PM+         +    D   +  Q+  
Sbjct: 91  QRGLTERCAFCPVDELLSCGDEVPLVEWDEESPMTGRTYRNYDSLVTWVDGSRVHLQQSV 150

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               L +A  D LTG+ +R++  +RL   L  +A +      V+  DI++ K +ND+ G 
Sbjct: 151 DITALVSANTDELTGMLSRRAGKERLGISLARAAVEGEQVSVVLY-DINRLKDVNDLHGH 209

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD ++ S    +       D   RLSG+ F  + + +  S ++       R +++   
Sbjct: 210 AEGDYLIRSAANAVRCEFGPNDYGFRLSGDEFVCVFLGDAASTRVK--IERARAALSATP 267

Query: 646 NLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHR 687
              E    +    G A     + +   E+L  A+  MY  K R
Sbjct: 268 RRTEPPYEMGFCFGIAEADPEAPLELYEVLALADRRMYEEKRR 310


>gi|229917997|ref|YP_002886643.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
 gi|229469426|gb|ACQ71198.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
          Length = 684

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 126/541 (23%), Positives = 251/541 (46%), Gaps = 13/541 (2%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGR 478
            +   + V   P +  +L      + G  R W   IH +   +   R +L S    R   
Sbjct: 144 TNAKGEIVDINPSLCRLLDATEQQLIG--REWFELIHDSSEQDGISRNVLKSLATNRI-- 199

Query: 479 LQYEFRVRAA--DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
              E  +     +++  W+ + + P+ +   ++++Y     D++E+K+  + +   A+Q+
Sbjct: 200 WNGEMPISCKQHESEPCWLNLTVVPIVSEKNEVIQYTAFGFDVSEKKRLEKEVQFLAYQN 259

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+ N++ FL R  +IL      + L   + + DID++K IN+  G  VG+++L+ + 
Sbjct: 260 ELTGLYNKKGFLRRYDSILRQIDEREGLLH-IALFDIDRFKIINESFGSRVGNELLIQIK 318

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R   L+    +L   +G  FG++   E +  ++      ++  +  P  +    I V+ 
Sbjct: 319 ERALHLIPESALLFHPTGGLFGVMFFEE-SKEEVFQVLRHLQHELQRPFRIYHHSIMVSI 377

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + SS  +  E+   AE A++  K  G   ++        +    I  ++ +  A
Sbjct: 378 SIGCVFYPSSTSSLEELYTRAESALFKGKQIGVGTIQFVTKDMDAAFSRQIHIEKAMYRA 437

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E    YL Y P   L  + ++G EAL++W H + G I  SEF+ +AEE+ +I  IN ++
Sbjct: 438 LEEKHFYLEYQPKYELATDRLIGFEALLRWHHDELGQIPPSEFIPLAEEMALIVPINNWV 497

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +    + + +W+ +    P+ + INI+      +     ++ +  +    P+ I L  +E
Sbjct: 498 ILEATKQLKAWKAEF-DQPLSMAINISPNQFRSDSFLNTLRNIKQQLQLDPADIILEITE 556

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S+VM   +     + +++++   L++DDFGT  S L YL   P D +K +   +      
Sbjct: 557 SLVMQQTDEIIERMEQIKRLNYRLSIDDFGTGFSSLQYLKSFPVDELKIDKVFLDDWMAS 616

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  +L  I+ + K++   ++A+ +  E  +  L    CD  Q    A P   ++I +LL+
Sbjct: 617 KSHLLDVIVHLGKSLNLHVVAEGVEDEEMLAHLKSTDCDSFQGYLYARPASPSAIEQLLR 676

Query: 955 E 955
            
Sbjct: 677 S 677


>gi|326776418|ref|ZP_08235683.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
 gi|326656751|gb|EGE41597.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces cf. griseus XylebKG-1]
          Length = 998

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/784 (18%), Positives = 315/784 (40%), Gaps = 42/784 (5%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           +I G    LA  L + +  + + +   + A A + L Y  +D   +S ++ L      + 
Sbjct: 209 LIGGSLLTLAWSLALAHTAHLAGVQDTSVAPAALSLAYPLLDIVLVSMVLALHFRRAGVN 268

Query: 254 RACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           R+    A+++  +  L   +  +   R     G +  +G    ++L   + +     A  
Sbjct: 269 RSAVNTAIAALALTVLSDAVFTSPLLRSTYHSGQLLDAGWFAGSLLLAYAPWGARRAARP 328

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
           +        +                   L P           L+  +  R  + ++   
Sbjct: 329 SPRPGPPRAIASRPIAGSLAA--------LTPYLAAAVCTLGILYNVVDGRRVDRVVI-- 378

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
             G  V++ +++   ++  +L     +Q +          V GS D++            
Sbjct: 379 FTGCTVVLALVVRQGIM--LLDNISLTQELAQKENHFRSLVQGSSDVIMIAAPNGTLRYV 436

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRA 487
           +P  A + G  +  + G   +    IH +D   F   +  F+    +     + E R R+
Sbjct: 437 SPAAAGVYGREAEGLVGSELS--SIIHPDDLGRFVHEVRRFLAAPPHEEPTTRIECRFRS 494

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +  +   +             +  + D+TE+ +    +  NA  D LT +PNR  F
Sbjct: 495 GTGDWLNVESTVNRHQG------GLLLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALF 548

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R+   L       +    V+ ID+D +K +ND +G   GD++L+   RR+ + ++  D
Sbjct: 549 TARVRQALG-GRRSGDPGTAVLFIDLDGFKAVNDTIGHQAGDELLIQAGRRLQDSVRAGD 607

Query: 608 ILARLSGNRFGIILISENNSLK------IADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             ARL G+ F  +++ +    +      + + A  +R +++ P  +   E+ V ASIG A
Sbjct: 608 TAARLGGDEFAALIVGDGTRDQGAREYQVHEIADRLRLTLSQPYRIGPSEVRVAASIGVA 667

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +    I+ +++++NA+LAMY AK  G + VE +             +   L  A+   E
Sbjct: 668 -FAEPAISPTDLMRNADLAMYRAKAGGKDRVELYAPQMQADVVRRSELATRLRTALREGE 726

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L++ P++ L    +  + A  +W   +    + +EF+ ++ +      +  ++LE   
Sbjct: 727 FALLHQPVVHLASGSVAAVAAQARWRSAQGILFTPAEFLRVSGDDDRTAELGRWLLEEAV 786

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                     +  P+ + + +++  LL+       ++AL+++       + +  ++S   
Sbjct: 787 AQAADRARAGH--PVAVSVRLSAARLLEAASPPGSIEALLTRHGLPSGALMIEVADSDPR 844

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            + +     L  LR++G+ + LD FG+  + ++ L  +P D +K + +L+ G  E     
Sbjct: 845 VSFDALEQRLVALRRLGVRIALDGFGSGFAAINALRRLPIDVLKLDRNLVEGVVESARLH 904

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
            I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    + + L++ 
Sbjct: 905 KITSGLLRIACDLGLQSVADGVDVPEQVLALRAMGCTHGQGMAFSGPLDEYRLRRALVRG 964

Query: 956 RFPL 959
            FP+
Sbjct: 965 EFPV 968


>gi|190893458|ref|YP_001980000.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698737|gb|ACE92822.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 793

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 148/729 (20%), Positives = 276/729 (37%), Gaps = 52/729 (7%)

Query: 263 SSLIIFLFMYLHWNRW---------HAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           + L++F      + R+         HA +       +A  A    +  +       +   
Sbjct: 83  AFLLVFTARMAIFRRFDRVDKESLSHAAIERWERILVASGACTTALLGFASGYAIFVVHD 142

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           + A +            + G              F     +  ++        +    + 
Sbjct: 143 SFAELACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCSLLAMDFYRGVLSIFLI 202

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              L    +   V + +       + I    +R   A+      +   D           
Sbjct: 203 PFWLTTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRVQVINRK 262

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA--ADNQ 491
              +L +      G            D          +      + +   R     AD  
Sbjct: 263 ACELLKI------GAPERLKDR----DLGAVLRYGARYSFMDASQPELILRQLTQVADGN 312

Query: 492 F----------HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
                        +         ++G     + I  D++ + K+ + I+     D LTG+
Sbjct: 313 LSRTLIHFPEDLSLEFSAS--RRADG---GAVLIFEDVSSRVKAEQKIMHMVRFDALTGL 367

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+ F   +   L             MV+DID++K +ND+ G   GD +L ++  RI +
Sbjct: 368 PNREYFGQLVQEYLARHPRKSG-PLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQ 426

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                 IL RL G++F +          +      +  +I     + E    V+ S G+A
Sbjct: 427 A-CGNAILGRLMGDQFILFFPHAKEPTSLELSIRRVHAAIQGHYEVDELTFLVSLSAGYA 485

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
              SS     E    A+LA++ +K R  GG       +     ++  +K DL  AV    
Sbjct: 486 ILESSAFAMDEWSVKADLALFESKSRLKGGISGFEREMDGRYIEQQKLKADLREAVSAQA 545

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L+LV+ P+ R     I   EAL +W HP+ G+I    F+ +AEE+ +I  I  F+L +  
Sbjct: 546 LHLVFQPMFRADGTRIECAEALARWVHPEKGSIPPDVFIRLAEEMGIISDITRFVLFKAC 605

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            + +SW D      I + +N++++DL D ++   +   ++ +    +R+ L  +ES ++ 
Sbjct: 606 SECMSWPDH-----IAVSVNLSARDLRDADILSVVADALAHSGLDAARLHLEVTESCLID 660

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
            P+  R +L  LR  GI++ +DDFGT  S LSYL  +P D VK + S +       +R+ 
Sbjct: 661 EPQAVRAILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLK 720

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKE- 955
           +LR  + +A+ +   I+ + +  E  +  L +    D +Q    + P+   +I  LL++ 
Sbjct: 721 LLRGTVHLARELGLKIVIEGVETEEQLALLNKHRSTDLVQGYVFSQPVPSQNIP-LLQQG 779

Query: 956 --RFPLVKN 962
             R P+ + 
Sbjct: 780 IGRRPVQRR 788


>gi|87120226|ref|ZP_01076121.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinomonas sp. MED121]
 gi|86164329|gb|EAQ65599.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinomonas sp. MED121]
          Length = 949

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/693 (20%), Positives = 286/693 (41%), Gaps = 33/693 (4%)

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
             Y+  +R   +    +   +     L     Y   +T   + I L  + L  + F+++ 
Sbjct: 249 KHYIFAHRNLIRGNETSDLSLTFWVALPSEKGYQTALTNLRSDIVLILVALTLSIFLLW- 307

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
                  A  +I   +   +           +          +  L   +  I       
Sbjct: 308 -----TFARFIIMNPMASLLAEFSNKNIEPGK-------QLSIHQLDDSIRQILNQQKNT 355

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                   Q +    ++Q L +  +   + ++D   + ++ +    T   +    +    
Sbjct: 356 AKHLSVTEQQLILAYQKQDLILNSASVGIIEFDQNINILSYSQRCQTFFQVPEEQIQHQH 415

Query: 450 RNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            + L         ND        ++        +    R R  + +  +    +  + + 
Sbjct: 416 LSALAMCAGSRQCNDFQPLLDRFEANEDEDFILVTKSLRGRQQEPEELFYKWHLTRVESQ 475

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              I +++ +  D TEQ+     +   A  D LT +PNR S ++ +   +         +
Sbjct: 476 A-SITKWVAVIEDATEQENVKRSLSERASHDWLTKLPNRYSAMESVEESI---KAHHVDQ 531

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +++ D++ +K IND  G  VGD +L+ L+ R+G LL+  + LAR  G+ F + +    
Sbjct: 532 FYLVLFDLNGFKLINDTFGHDVGDALLIGLSERMGSLLEPNERLARFGGDEFLLFIPG-- 589

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++      + K I   I +  R+    AS G A +      +  ++K A+LAMY AK
Sbjct: 590 --NQLLSRINFLHKEIFASIRIQNRDFHCAASAGIAVYPKDGTDTLTLIKRADLAMYEAK 647

Query: 686 HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +       +R        +R  ++  L  A E++E  L Y P++    + I+ +EALI+
Sbjct: 648 RKQATDCVCYRPEMENQGVERYEMESALRYAYEHNEFSLNYQPVVNPEQKRIMSVEALIR 707

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W     G +   +F+ +AEE+ +I  I L+++++   D+   +       + I +N++  
Sbjct: 708 WQSASKGWVGPDKFIKVAEEMGLINQIGLWVIKQALTDLEHVKSIFGD-DVCINVNLSPH 766

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L ++ L   + AL  +     + + L  +E+V++ +   S   + RLRK G  + LDDF
Sbjct: 767 QLDNSALTNELVALAQQKPSLMNNLILEVTENVLIND--ASVDRIYRLRKAGYRIALDDF 824

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LS++  +P D +K + S +     +E+   +L++I+ MAK+++  I+A+ I  E
Sbjct: 825 GTGFSSLSHIARMPIDILKIDQSFIARFDDSERDRLLLKNIVAMAKDLDLHIVAEGIESE 884

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI-LKLL 953
             + +L  MGC  +Q    + P   +    K L
Sbjct: 885 HQVNQLADMGCPNMQGYFFSKPKALSEFDTKFL 917


>gi|257792630|ref|YP_003183236.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
 gi|257476527|gb|ACV56847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
          Length = 885

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 219/545 (40%), Gaps = 23/545 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++          +     L S  +      W   +H +D+  F  
Sbjct: 345 YDALVESTDDYLYVCNMRTGVFRYPRAMVEEFDLPSEVVENAAAVWGSKVHPDDKQAFLE 404

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   R  R   E+R      ++  +  R R + ++ G  L + G   ++ ++ K  
Sbjct: 405 SNQEVADARTTRHWVEYRAINRKGEWVRLRCRGRLILDAKGKPLLFAGFITNLGKKSKV- 463

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D LTG+ N+  F D +   ++      + R ++MV+ ID  + IND    A
Sbjct: 464 ---------DPLTGLFNKFEFEDDVRRRMETMQ---SARISLMVLGIDDLRHINDRYDRA 511

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+V+  + +RI   L     + RL G+ F +  I +++   +      +        +
Sbjct: 512 FGDEVIRFVAQRIQSSLPEDARVYRLDGDEFAV--IVDDDVDVLRSAYAQLGGMFQRQHD 569

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              R+   T S G A +     T   ++K A  A+ HAK  G     +F           
Sbjct: 570 HEGRKFYCTLSGGIAQYPGDAETYESLVKYANYALEHAKGHGKKRCVNFSQPILAERVRE 629

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  E L  +VEN      L Y P +      +VG EAL +W   ++G++S  EF+ + E
Sbjct: 630 LELMELLRDSVENGFKGFSLCYQPQVEAATGCVVGAEALARWRCDEYGDLSPLEFIPLLE 689

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L+        WR     P   + +N++ + L ++ L   +   + +  
Sbjct: 690 ESGLIVPVGTWVLQHAVDTCKRWRKAI--PSFTMSVNLSYRQLDEDGLVPLIVDTLREAE 747

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + +  +ES    + + +  L  +LR  G+ + +DDFGT  S L  L   P D VK
Sbjct: 748 LPPESLVVEMTESRFADDAQVTHELFDQLRMQGVRVAMDDFGTGYSSLGVLKTSPADIVK 807

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +     +      ++ ++ +   +  ++  + +    + + +  MG DYIQ    
Sbjct: 808 IDRAFIRDIQTSTFDATFIKFVVELCHAVGISVCLEGVETNEEYEVVGGMGLDYIQGFLF 867

Query: 941 ASPLG 945
             PL 
Sbjct: 868 GRPLP 872



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 99/294 (33%), Gaps = 46/294 (15%)

Query: 410 AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHI---------- 458
            + G    ++  D   DR+      +    G+         +     +            
Sbjct: 47  VLEGMRTSIYVTDPKTDRILYMNGFMKHDYGVEDPEGKVCWQVLQRGLTERCAFCPVDEL 106

Query: 459 ----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               ++        +S +  R  R  Y+  V   D     +   +               
Sbjct: 107 LSCGDEVPLVEWDEESSMTGRTYR-NYDSLVTWVDGSRVHLQQSV--------------- 150

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DIT         L +A  D LTG+ +R++  +RL   L  +A +      V+  DI+
Sbjct: 151 ---DITA--------LVSANTDELTGMLSRRAGKERLGISLARAAVEGEQVSVVLY-DIN 198

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           + K +ND+ G A GD ++ S    +       D   RLSG+ F  + + +  S ++    
Sbjct: 199 RLKDVNDLHGHAEGDYLIRSAANAVRCEFGPNDYGFRLSGDEFVCVFLGDAASTRVK--I 256

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHR 687
              R +++      E    +    G A     + +   E+L  A+  MY  K R
Sbjct: 257 ERARAALSATPRRTEPPYEMGFCFGIAEADPEAPLELYEVLALADRRMYEEKRR 310


>gi|332524414|ref|ZP_08400627.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107736|gb|EGJ08960.1| diguanylate cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 697

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/607 (20%), Positives = 247/607 (40%), Gaps = 21/607 (3%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           +       ++         +   + L    +    +  +               R   A+
Sbjct: 92  VAHGAVFNEQWTLFPDGQPVPLQMQLSGWRLPDGRMAMLCEGRPIEHTTPESL-RAVDAL 150

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
           L +  ++    +    +   P     +      +     +                L   
Sbjct: 151 LHTPMMISLHALDGRALYRNPAARASVRRHDEPLCERFAD----------AEALAALQCQ 200

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +    G       V  A     W  +  R   ++       +    D+T  K+S      
Sbjct: 201 LECD-GEATLTMAVHTAAG-PRWHEVSARRRRDAVTGAEVLLLGETDVTPLKQSEAQARF 258

Query: 532 NAFQDNLTGIPNRQSFL---DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +  D LT +PNR +      RL   +  +  +  L+  V++ID+D +K +ND  G A G
Sbjct: 259 LSEHDGLTRLPNRAAAEAHFRRLADAVRQAPPERPLKAAVVLIDLDHFKDVNDSWGHAAG 318

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++LV +  R    ++  D++AR  G+ F I+L + +   ++A     +R+ +A P  L 
Sbjct: 319 DELLVQVAERFAGAVRRDDLVARFGGDEFLILLAAPDPRREVARIHARLRERLARPFELG 378

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVM 706
             +  V A++G + +         +L++A+LAMY  K  G + +  +   +S     R  
Sbjct: 379 SVQARVAATVGASVFPDDGEDFERLLQHADLAMYRGKAEGRDALAFYEAGMSVTLQARTR 438

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++++L  A+   E  L Y P +      IVG EAL++W HP  G +   EF+ + E   M
Sbjct: 439 LEQELRPALARHEFELFYQPRVSAGVPRIVGAEALLRWRHPARGWVMPGEFIPVCEATGM 498

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           ++ +     E  AR    W        + + +N++  +  D  L E ++A++  T   P 
Sbjct: 499 MRELGRRAFEMAARQQAGWWAAGRR--LKLSVNLSPCEFEDPWLLEEIEAVLRDTGCPPQ 556

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  +ES+++   ER+  ++  LR +G+S+ LDDFG   S L+YL  +PF ++K +  
Sbjct: 557 ALEIEVTESMLVAEGERTTRVVEGLRALGLSVALDDFGIGYSHLAYLQRLPFTSLKIDRR 616

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +    ++R  +  +I+ + + ++   +A+ +  E   + L  +G    Q    A  L  
Sbjct: 617 FVQAPLQERP-VAEAIVGLCRAMKLHPVAEGVETEAQRRWLEELGVAEFQGWLFAPALPR 675

Query: 947 NSILKLL 953
                LL
Sbjct: 676 ERFEALL 682


>gi|302542306|ref|ZP_07294648.1| diguanylate cyclase/phosphodiesterase (GGDEF EAL domains)
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302459924|gb|EFL23017.1| diguanylate cyclase/phosphodiesterase (GGDEF EAL domains)
           [Streptomyces himastatinicus ATCC 53653]
          Length = 722

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 110/426 (25%), Positives = 212/426 (49%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  ++++D+D+++ +ND LG   GD +L+
Sbjct: 277 LRDPLTGLPNRQWLLERTWTALDEAERA-GARTALVLLDLDRFRSVNDTLGHLAGDRLLL 335

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L     +ARL G+ F ++L + ++       A  +   +  P++L    + 
Sbjct: 336 QIAERLRLALPRGAEVARLGGDEFAVLLPTTDSLTSAQRSARVLVGDLGNPLDLDGLTLV 395

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  +   R      DR+ +  DL 
Sbjct: 396 LEASAGVAVYPDHALDAEGLLRRADVAMYQAKRDRSGVELYEARRDGNTPDRLGLLGDLR 455

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  ++ L Y P +   D  + GLEAL++W HP+ G +   EF+ +AE   ++  +  
Sbjct: 456 RALDAGDVELHYQPKVGF-DGHVAGLEALVRWVHPERGKVPPDEFISMAESSGLMPRLTE 514

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR      P  + +N++ +D+        +   +++       ++L  
Sbjct: 515 YVLETALGQVARWRADGLEVP--VAVNVSPRDVHTPGFAGAVAGRLARHGVPAGALQLEI 572

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 573 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 632

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +  +   
Sbjct: 633 VDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPDETT 692

Query: 951 KLLKER 956
             L+ R
Sbjct: 693 AWLRAR 698


>gi|218671434|ref|ZP_03521104.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 450

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 251/440 (57%), Positives = 327/440 (74%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
           +LGYI +DFGFL KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T 
Sbjct: 1   MLGYICVDFGFLGKLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATL 60

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
           + +  +A+LF ++ Y P + A IAR++ A         IIY G   Y+RA+LL+PAW L 
Sbjct: 61  AWVLGLALLFGVAIYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDRAILLVPAWALT 120

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +W  G W+ +T RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F QG+FSD ERQ
Sbjct: 121 LVWLFGAWLTVTGRLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQ 180

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           SLA+ GSGD+VWDWD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  
Sbjct: 181 SLALTGSGDMVWDWDVARDRVVTIPDVSVKLGLSPGAMHGAARNWLPRLHPDDRDRFRAT 240

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           LD  + +RRGRL +EFR+RA D  FHW++IR RP+  SNG+I+R +G   D+TEQK S+E
Sbjct: 241 LDVLLEHRRGRLNHEFRIRAEDGHFHWLLIRARPVLGSNGEIIRCVGTIVDVTEQKNSVE 300

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +L +A  DNLTG+PNRQ FLDRL  +L L+   D LRPTVMVIDID+YK +ND LG+A 
Sbjct: 301 RLLHDALHDNLTGLPNRQVFLDRLQAVLALAPGGDTLRPTVMVIDIDRYKLVNDALGVAA 360

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L++LTRR+  L+K  D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN 
Sbjct: 361 GDNILIALTRRLRRLMKPQDTLARLAGDQFGLILVSEHNPAKVADFADAVSKAIMVPINF 420

Query: 648 LEREITVTASIGFASWTSSK 667
             REI +TASIG ASW    
Sbjct: 421 SNREIILTASIGLASWVDRA 440


>gi|221065996|ref|ZP_03542101.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
 gi|220711019|gb|EED66387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Comamonas testosteroni KF-1]
          Length = 761

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/739 (19%), Positives = 307/739 (41%), Gaps = 29/739 (3%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           M W+   ++ +    +S +  L      +  A S   +  SL+          +W     
Sbjct: 17  MVWLGCLWMWVLGAMMSLVWLLAPAVDDVDLALSGGVMLLSLLCMGLA--KTRKWA-WAV 73

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
                G   +++L+          A +A      + ++         M G    V+    
Sbjct: 74  SCFVWGNWLLSLLWAWHTGGLYGPAVMAFPAWLVVAVWVQGTRAALAMLGLSTLVVAALW 133

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF---TVIQHVLATGYFSQGI 400
           W+   I      ++ T+ L   I    ++  +++I +         +Q  + T    +  
Sbjct: 134 WLAPQIGMPAAALSATEHLLALIHVVGMMMLVLIICLQARASLGRRVQKSMETLAALEVT 193

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            ++  +   AV  S + +   D     V       +  G A   + G     +  +   D
Sbjct: 194 QNELRKFYRAVEQSPESIVITDPQLKVVYVNEAFLSRSGYAREQVLGQSTELVSTMG-MD 252

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R + +  L           + E   R +  +     + + P+    G+++ Y+ +  D++
Sbjct: 253 RSHRQRALKQLATG--TLWRGEMTNRTSKGEALRESVLVTPIRTPQGEVVNYVELKRDLS 310

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   I    + D LTG+PNR S    L   L+L+  D      ++++D+D++   N
Sbjct: 311 ERVLAERRIHDLVYLDPLTGLPNRHSLTLHLRE-LNLARQD--ACHGLLLLDVDRFSVFN 367

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAI 635
           DV G+   D+++ ++  R+ E L     +AR++   F I+  S +        ++  +A+
Sbjct: 368 DVHGMQHSDELVQAMGARLVEALPDDAWIARIAAAEFAIVFDSLHKHAQGVEEQLQQYAL 427

Query: 636 AMRKSIAMPINLLE--REITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNH 691
            ++K++  P +L        V+  IG A    +     S ++L+ A +A++ AK  G   
Sbjct: 428 TLKKALQKPFSLNSWIETEFVSCCIGGAVLEPALKGGNSHDVLRFASVALHEAKQGGPGS 487

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F     +       I +DL   +   EL L             VG EAL++W HP+W
Sbjct: 488 VVLFEPRMAQDVYRRVRIAKDLYHGISQGELRLYLQSQTDAR-GRCVGAEALVRWQHPEW 546

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ +AEE  +I  +  ++L +    +   R       + + +N++++     +
Sbjct: 547 GLVSPGEFIPVAEESELIVRLGDWVLRQACTLLA--RPAMAERGLRLSVNVSAQQFGHED 604

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ +T  +  ++ L  +E  ++ + +++R  +  LR +GI ++LDDFGT  S 
Sbjct: 605 FMATLDKILRETGANARQLTLEITEGTLLRDLDQARRRMLALRGLGIEISLDDFGTGYSS 664

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           +  L ++P   +K + S ++GS   EK  A++ +++ +A  ++  ++A+ +       +L
Sbjct: 665 MYSLQHLPIQELKIDRSFVSGSHRSEKDAALVEAMLLVAHRLQLRVVAEGVELSEQALQL 724

Query: 928 TRMGCDYI-QDSHVASPLG 945
           TR   D + Q   +  P+ 
Sbjct: 725 TRWNPDIVLQGMLLGMPMP 743


>gi|320332789|ref|YP_004169500.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754078|gb|ADV65835.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 643

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 192/443 (43%), Gaps = 12/443 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR-PTVMVIDIDKYKKINDVL 583
             E +   A  D LTG+PNR      L   L       +    +V+ ID+D +K IND L
Sbjct: 199 HTETLQHLASTDPLTGLPNRLHLERVLQRALHPDPPTTDPAPFSVVYIDLDGFKLINDTL 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL+    R+    +  DI+AR+SG+ F   L   +        A     ++  
Sbjct: 259 GHEAGDHVLIDTASRLRSCCRAHDIIARISGDEFVAYLPGIH-QDMAEMVAYRFLAALEP 317

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P  +  +   +TAS+G ++       ++ +L++A+ AMY  K  G N V  +        
Sbjct: 318 PFTIDGQVTHLTASLGISAHPDHGHDAAALLRHADSAMYRVKSEGRNGVGVYTPDSGERE 377

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +  DL +A++  E  L Y PI+ L     V +EAL++W HP  G IS   F+ +A
Sbjct: 378 EHHRRLARDLRVALDRQEFTLAYQPIVDLPTGRTVKVEALLRWTHPTHGPISPMTFIPLA 437

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  +  ++L        +W+       + + +N++            +   ++  
Sbjct: 438 EANGSIVPLGTWVLNEACASARAWQRAGFD--VKVCVNVSVIQFSQPAFVATVLQALATH 495

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  ++L  +E +VM N E  R  L  LR  G+   +DDFGT  S L+YL  +P DT+
Sbjct: 496 DLPPHLLELELTEGIVMKNVEGVRATLDDLRAAGVGTAVDDFGTGYSSLAYLRDLPIDTL 555

Query: 882 KFNGSLMTGSTEK------RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           K + S +             + ++ +II +A     T++A+ I  E     L  +G    
Sbjct: 556 KIDRSFIKDLVTDEGPSTPAMTLVEAIIRVADVFGMTVVAEGIETEAQRDALRALGVGCG 615

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q  H A PL    +L  LK   P
Sbjct: 616 QGYHFARPLPLEGLLASLKLDQP 638


>gi|158425164|ref|YP_001526456.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans
           ORS 571]
 gi|158332053|dbj|BAF89538.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans
           ORS 571]
          Length = 546

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 199/439 (45%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  K+ E     A  D LTG+ NR+   D L   L  +  +      V+++DID+++ + 
Sbjct: 100 EVIKAREKADSLARHDPLTGLANRRILRDTLRKRLGAAGAN-GPHTAVLLVDIDRFRSVA 158

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G ++ D VLV +  R+  LL    +LARL G  F  ++    +   +   A  +   
Sbjct: 159 DLHGHSLSDLVLVEVANRLKSLLPSDAVLARLGGEEFIAVMPRPASLDALGKLAQHIINH 218

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSS 699
           ++ P  L   +  + A++G A    +     E+++ AE A+Y AK   G        +  
Sbjct: 219 LSSPYQLNGLDARLGATVGIAVSPDNGTDEMELMRAAEAALYRAKANPGTYRFFQPAMDR 278

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + ++ DL  A+ N  +   Y P +RL D  + G E L +W+HP  G IS   F+ 
Sbjct: 279 ELKQTLRLQRDLHTAIANGAIVPFYQPFLRLSDNSLAGFEVLARWNHPIRGFISPDAFIP 338

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE+ +I  +   +L +   D   W        + I +N++   L +  L + +   + 
Sbjct: 339 VAEEIGLIGQLTTAILRQACLDASKWPQ-----NLKISVNLSPVQLKEVSLPDQIYRTLR 393

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
              + P R+++  +E+ ++ +   +R +L   R  GI + LDDFGT  S L  L   P  
Sbjct: 394 TAGFPPQRLEIEITETGLVNDVTTARAILTNFRTAGIEVALDDFGTGYSSLQNLRSFPVT 453

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    +  +  +++  I+ M+K++     A+ I    +   L  +GCDY Q 
Sbjct: 454 KLKIDKSFVRSMNTDPQSKSLVVGILAMSKSLGILTTAEGIEEAGEGVWLGSIGCDYGQG 513

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+    +   L  R
Sbjct: 514 YCYAKPMRGEEVPAFLNSR 532


>gi|317488919|ref|ZP_07947449.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911993|gb|EFV33572.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 885

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/545 (20%), Positives = 219/545 (40%), Gaps = 23/545 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++          +     L S  +      W   +H +D+  F  
Sbjct: 345 YDALVESTDDYLYVCNMRTGVFRYPRAMVEEFDLPSEVVENAAAVWGSKVHPDDKQAFLE 404

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   R  R   E+R      ++  +  R R + ++ G  L + G   ++ ++ K  
Sbjct: 405 SNQEVADARTTRHWVEYRAINRKGEWVRLRCRGRLILDAKGKPLLFAGFITNLGKKSKV- 463

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D LTG+ N+  F D +   ++      + R ++MV+ ID  + IND    A
Sbjct: 464 ---------DPLTGLFNKFEFEDDVRRRMETMQ---SARISLMVLGIDDLRHINDRYDRA 511

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+V+  + +RI   L     + RL G+ F +  I +++   +      +        +
Sbjct: 512 FGDEVIRFVAQRIQSSLPEDARVYRLDGDEFAV--IVDDDVDVLRSAYAQLGGMFQRQHD 569

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
              R+   T S G A +     T   ++K A  A+ HAK  G     +F           
Sbjct: 570 HEGRKFYCTLSGGIAQYPGDAETYESLVKYANYALEHAKGHGKKRCVNFSQPILAERVRE 629

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  E L  +VEN      L Y P +      +VG EAL +W   ++G++S  EF+ + E
Sbjct: 630 LELMELLRGSVENGFKGFSLCYQPQVEAATGCVVGAEALARWRCDEYGDLSPLEFIPLLE 689

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  ++L+        WR     P   + +N++ + L ++ L   +   + +  
Sbjct: 690 ESGLIVPVGTWVLQHAVDTCKRWRKAI--PSFTMSVNLSYRQLDEDGLVPLIVDTLREAE 747

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + +  +ES    + + +  L  +LR  G+ + +DDFGT  S L  L   P D VK
Sbjct: 748 LPPESLVVEMTESRFADDAQVTHELFDQLRMQGVRVAMDDFGTGYSSLGVLKTSPADIVK 807

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +     +      ++ ++ +   +  ++  + +    + + +  MG DYIQ    
Sbjct: 808 IDRAFIRDIQTSTFDATFIKFVVELCHAVGISVCLEGVETNEEYEVVGGMGLDYIQGFLF 867

Query: 941 ASPLG 945
             PL 
Sbjct: 868 GRPLP 872



 Score = 96.2 bits (238), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 98/283 (34%), Gaps = 24/283 (8%)

Query: 410 AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            + G    ++  D   DR+      +    G+      G +                 +L
Sbjct: 47  VLEGMRTSIYVTDPKTDRILYMNGFMKHDYGVEDPE--GKVC--------------WQVL 90

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND---ITEQKKS 525
              +  R      +  +   D           PM+         +    D   +  Q+  
Sbjct: 91  QRGLTERCAFCPVDELLSCGDEVPLVEWDEESPMTGRTYRNYDSLVTWVDGSRVHLQQSV 150

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
               L +A  D LTG+ +R++  +RL   L  +A +      V+  DI++ K +ND+ G 
Sbjct: 151 DITALVSANTDELTGMLSRRAGKERLGISLARAAVEGEQVSVVLY-DINRLKDVNDLHGH 209

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD ++ S    +       D   RLSG+ F  + + +  S ++       R +++   
Sbjct: 210 AEGDYLIRSAANAVRCEFGPNDYGFRLSGDEFVCVFLGDAASTRVK--IERARAALSATP 267

Query: 646 NLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHR 687
              E    +    G A     + +   E+L  A+  MY  K R
Sbjct: 268 RRTEPPYEMGFCFGIAEADPEAPLELYEVLALADRRMYEEKRR 310


>gi|88861310|ref|ZP_01135941.1| putative orphan protein; putative GGDEF protein [Pseudoalteromonas
           tunicata D2]
 gi|88816689|gb|EAR26513.1| putative orphan protein; putative GGDEF protein [Pseudoalteromonas
           tunicata D2]
          Length = 794

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 211/437 (48%), Gaps = 5/437 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-SATDDNLRPTVMVIDIDKYKKIN 580
           ++ + + +      D LTG+ NR   +DRL   +   +    +    ++ +D D++K IN
Sbjct: 359 RELTRQSLEHKVMHDELTGLANRVLLIDRLNQAITRLARQTYSTMHALLYLDFDRFKIIN 418

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD  L+ +   I   ++  D LARL G+ F I++   ++  ++      +  +
Sbjct: 419 DTLGHQVGDKFLIQICLLISSCIRQSDTLARLGGDEFAILMEDIHSQNEVKLLVERIHLA 478

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI +    +  + SIG A        + ++L+ A+ AMY AK  G   V+ F  S  
Sbjct: 479 LKEPIEIDGNLLQGSTSIGIAFACHETDAAYKILQRADAAMYEAKSLGRGQVQYFSESMR 538

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +   +++ D+   ++  E  L Y PI R+ D+ ++  EAL++W HP  G +S ++F+
Sbjct: 539 AKLKGAALLETDIQRGIQQHEFELYYQPIFRIHDQHVIAFEALVRWHHPDKGFVSPNDFI 598

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+   I  ++L++LE+ A+ I  W+ Q       + +N++S+   + E    +  L 
Sbjct: 599 PIAEDTGQIIQLDLYLLEQAAKQIQLWQQQT-DTLFRVTVNVSSRHFANLEFVSFIDRLY 657

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                    + +  +ES ++ N   +  ++  L    + L LDDFGT  S L YL  +P 
Sbjct: 658 RTYQLRSGSLCIEITESGLIENLSLATKIIEGLAPHQVKLCLDDFGTGYSALGYLHQLPI 717

Query: 879 DTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             +K + S +      +   ++ +I+ +A+++   ++A+ I  +  ++ L +  C + Q 
Sbjct: 718 HILKIDKSFIDHLQNGQNHPLVEAILTLAQSLNLEVVAEGIEFQSQLEVLIQTSCTFGQG 777

Query: 938 SHVASPLGFNSILKLLK 954
             +A P+  N  +  L 
Sbjct: 778 FLIAKPMPANEAIGYLS 794


>gi|307326521|ref|ZP_07605716.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
 gi|306887929|gb|EFN18920.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Streptomyces violaceusniger Tu 4113]
          Length = 970

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/764 (19%), Positives = 294/764 (38%), Gaps = 54/764 (7%)

Query: 229 LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAKVGYI 285
           L Y  +D   +S ++ L        R+    A+++  +  L   L  +   R H + G I
Sbjct: 183 LAYPLLDIVLVSMVIVLHFRRSTGNRSAVNTAIAAFALTVLCDALFTSPLLREHYRSGQI 242

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
             +G    + L   + +     A+    +                      A  +     
Sbjct: 243 LDAGWFAGSALLAYAPWVARREAAQDPPSARRTPQQSVPIAGSLAALAPYLAAAV---CT 299

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           L  ++ +     I   + +           V++ +++   ++  ++     +Q +     
Sbjct: 300 LGVLFNVMDGRPIDGVVLS-------TACAVVLALVVRQAIM--LMDNIRLTQELAEKEN 350

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                V  S D++            +P    + G  +  M G        IH  D  +  
Sbjct: 351 HFRSLVQSSSDVIMIAAPTGVLRYVSPAATGVYGRDADEMVGS--ELASLIHPEDLGSVV 408

Query: 466 TILDSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             +  F+          + E R R+    +  +   I             I  + D+TE+
Sbjct: 409 HEVRRFLAAAPGEEPTTRIECRFRSGSGDWLNVESTINRHHG------GLIFNSRDVTER 462

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +    +  NA  D LT +PNR  F  R+   +       +    V  ID+D +K +ND 
Sbjct: 463 VRLQAQLQHNAEHDPLTDLPNRALFTRRVRHAVG-GRRRTDAGTAVFFIDLDGFKAVNDT 521

Query: 583 LGIAVGDDVLVSLTRRIGELLKFP--DILARLSGNRFGIIL--------ISENNSLKIAD 632
           +G   GD++LV   RR+ E ++    D  ARL G+ F  ++         +     +I +
Sbjct: 522 VGHHAGDELLVQAARRLQESVRSGSGDCAARLGGDEFATLIIGDGDGAGDAGAREQRIME 581

Query: 633 FAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            A  +R  ++ P  +    E+ V ASIG A +     +   +++NA+LAMY AK  G N 
Sbjct: 582 IADRLRVRLSQPYRVEGGTEVRVAASIGVA-FAEPGTSPGALMRNADLAMYRAKAAGKNR 640

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           VE +            +    L  A+ + E  L++ P++ L    I  + A  +W   + 
Sbjct: 641 VELYAPQMQAEVARRAEVATRLRAALHDGEFVLLHQPVVELTSGRITAVAAQARWRSAQG 700

Query: 750 GNISSSEFMLIA-------EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
              + +EF+ +A       E+      ++ +MLE         R   +  P+ + + + +
Sbjct: 701 ILFTPAEFLRVADNGRGGGEDTARTAELSRWMLEAAVEQAAQRRRDGH--PVPVCVRLPA 758

Query: 803 KDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             L+D  L    ++ L+++       + L  ++S      +     LG LR++G+ + LD
Sbjct: 759 SRLVDKSLPPKAVETLLARHGLPSGALILELTDSDPRVPLDELEHRLGALRRLGVRIALD 818

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
            FG+  + +  L  +P D +K +  L+ G  E      I   ++ +A ++    IA+ + 
Sbjct: 819 GFGSGYAAIRALRRLPIDVLKLDPGLVEGVVESSRLHKITAGLLRIAGDLGMQSIAEGVE 878

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPLVKN 962
               I  L  MGC + Q +  + PL  + + + LL+  +P+ ++
Sbjct: 879 LPEQIVTLRGMGCTHAQGAAFSGPLDEHRLRRALLRGGYPVPRS 922


>gi|332295955|ref|YP_004437878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermodesulfobium narugense DSM 14796]
 gi|332179058|gb|AEE14747.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Thermodesulfobium narugense DSM 14796]
          Length = 1160

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 117/561 (20%), Positives = 230/561 (40%), Gaps = 16/561 (2%)

Query: 403  DGERQ----SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + ER     S A+    D V   D     V    +   I G A   + G   + +     
Sbjct: 605  EMERFNAMTSTALNSGSDFVMITDKNFKIVYVNDNTEKIFGYARDELIGKHHSIISSR-S 663

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                  R    +    +  +    F  R+ D +  +    I P     G++  Y+ +  D
Sbjct: 664  QSLGFARRFYRTIRSGQ--KFSDFFVYRSKDGEKIYSYTTITPFLIR-GEVRFYVAVGKD 720

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT+ K   + +      D LTG+ NR  F++     L ++   +    +V +I+   +  
Sbjct: 721  ITQAKSLEDSLQRLKDYDPLTGLLNRNKFIENADEFLSIAK-YEKKLASVCIINPIGFSS 779

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IN   G   GD +L  +  RI + ++  D++ +L  + F I+L        + +    + 
Sbjct: 780  INQAYGFYTGDLILCEIANRIRKTIREYDLIGKLESDMFVILLEDIATLEDVLNIISKLN 839

Query: 639  KSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESF 695
              +  P +   ++EI V+ + G + + +    +  +++ A + +   K            
Sbjct: 840  LVLEKPYDTPKKKEILVSFNFGVSFFPNDGENAQLLVERANIGLGSIKSNKDKRIGFYKK 899

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                    ++ +K  L  A+ N E  L Y PI  + D+ IVG EAL++W       I   
Sbjct: 900  DFEQSARIKLDLKSKLEKAIINKEFILYYQPIFSIKDKSIVGAEALLRWKS-DGQIILPM 958

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+ + EE+  I  +  F+++ +   +  W  +     I I +N++ +   D      + 
Sbjct: 959  NFIPVLEEMGRIMDVEKFVVDSVCSKLKDWEKKEKKM-IPISVNLSERSFKDESFRRYVI 1017

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              I K         +   E   + + ER  ++L +  + G+ + LDDFGT  S  +YL  
Sbjct: 1018 YTIRKYGIHRGMFSVELVERTFVEDFERCLIILKKFSREGVFIYLDDFGTGFSSFNYLYK 1077

Query: 876  IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            + FD++K + S ++   +     +I+ SII + K +    +A+ +     +K L  +GC+
Sbjct: 1078 LKFDSLKIDKSFLSNIEKDIRAKSIVESIIFLNKRLNLKTVAEGVETLDQLKILEELGCE 1137

Query: 934  YIQDSHVASPLGFNSILKLLK 954
            Y+Q   +A P+      +L++
Sbjct: 1138 YVQGFLLAKPMPEEEFEELIR 1158



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 16/145 (11%)

Query: 403 DGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIH 457
           D ER     S A+  S +     D     +     +  I G ++  + G   + ++   +
Sbjct: 299 DKERNIKLLSEAMEESPEWFLIADETGTILHVNKAVEKISGYSADEIIGNKLSMFISDFY 358

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               + +  ++D      R   + E   ++ D    ++     P+   +  + R++ ++ 
Sbjct: 359 PE--NLYNELIDKISKGERC--ECEVVRQSKDKSVFYLDTIFIPVFF-DNKVYRFVELSR 413

Query: 518 DITEQKKSLEGILCNAFQDNLTGIP 542
           DIT++K   E I        LT + 
Sbjct: 414 DITKEKLQQEKIS------ELTRLY 432



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                    I G +   +      ++  I  +DRD     + S        L+YEFR + 
Sbjct: 36  FFDNSKDKAIGGFSDKRLVENNL-FVENIFPDDRDELIEKILSM--GAGESLKYEFRFKT 92

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++  + W+ + I  ++  +   +   G+   I+++K   
Sbjct: 93  SEENYIWLRLNITVVA-KDEKSVEISGLVEPISKEKNLD 130


>gi|88706994|ref|ZP_01104691.1| sensory box EAL/GGDEF family protein [Congregibacter litoralis
           KT71]
 gi|88698722|gb|EAQ95844.1| sensory box EAL/GGDEF family protein [Congregibacter litoralis
           KT71]
          Length = 399

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 121/402 (30%), Positives = 212/402 (52%), Gaps = 8/402 (1%)

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+ +D+D +K IND LG ++GD+VL +++RR+ + ++  DI+ARL G+ F I+L    
Sbjct: 2   LAVLFLDLDHFKDINDSLGHSLGDEVLRAVSRRLSDCVRKADIIARLGGDEFTIVLQGVG 61

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +S+   + A  +  +   PI + ER +TV  SIG +      +T+ E+L+NA+ AMY AK
Sbjct: 62  SSVIAVEVAQKILLAFEQPIIIGERALTVGTSIGISVSPDDGLTTEELLRNADAAMYRAK 121

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    +          R+ ++ D+  A+E  E ++ Y P + +    ++G+EAL++
Sbjct: 122 RNGRNTFMHYTPDMTERALARLSLESDMRRALEREEFHVAYQPQVDMHSGALIGVEALLR 181

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           WDHP+ G IS   F+ IAEE   I A+  ++L+++  + I   D      I   +N++ +
Sbjct: 182 WDHPEKGAISPKHFIPIAEENGQILALGKWVLQKVCAEQIRLADAGLA-GIRFAVNVSGR 240

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            LL     E ++ +I         ++L  +ESV++  PE +   +  +RK+GI++++DDF
Sbjct: 241 QLLHEGFLEFIEGMIKTGTCRGEALELEITESVLLSEPELAAEAMQAIRKLGIAISVDDF 300

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P + +K + S +          AI ++II +   +   +IA+ +  E
Sbjct: 301 GTGYSSLAYLKQYPLNRLKIDASFVRDIVIDPDDRAIAQTIIALGNALNLEVIAEGVETE 360

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                L   GC   Q    + PL   ++L+    R  +VKN 
Sbjct: 361 EQRAILVNDGCSLGQGFLFSRPLAPAALLEY---RRDVVKNA 399


>gi|15606615|ref|NP_213995.1| hypothetical protein aq_1442 [Aquifex aeolicus VF5]
 gi|2983839|gb|AAC07394.1| hypothetical protein aq_1442 [Aquifex aeolicus VF5]
          Length = 1054

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 123/552 (22%), Positives = 241/552 (43%), Gaps = 26/552 (4%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTIL 468
            A+  S + V   D     +     +  I   ++  + G   R +    H      FR + 
Sbjct: 521  ALEESREWVLITDREGKIIYVNKGVEEISKYSAEELIGKTPRIFKSGYHPQ--SFFRKLW 578

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             + +  +       F  +    +  ++  +I P+    GD+  +IG+  DIT++ K  E 
Sbjct: 579  QTILSGK--PFHAVFVNKNKYGELFYLDQKIIPLRTPEGDL-FFIGLCRDITKEVKLTEE 635

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            +      +  TG+ N+  F   L+ +L   ++       ++ +D+  + ++    G    
Sbjct: 636  VEWITTHNVETGLLNKVGFQKVLSPLLGKLSSTG----ALIALDMVGFSRLIKEFGEEAI 691

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
              +L  +  R+ +  +  DI+A+  G+ F I          +      +R+  + P+ + 
Sbjct: 692  KKLLKEIAVRLEKTFRRGDIIAKGDGDEFLIFAYPLKKKDDVLSLIEKIRQKFSKPLTID 751

Query: 649  EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
             ++I ++  IG  ++     T SE+   A  A+  AK RG   V  F     +    +I+
Sbjct: 752  GKKIRLSFYIGVVTYPYDGRTFSELYYRAITAVKEAKRRGAGEVVLFDEELDKEVERLIE 811

Query: 709  ED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             +  L  AVE +     + PI RL D +I  LEAL++       +    EF+ + E    
Sbjct: 812  GEKLLRKAVEENLFTFHFQPIYRLRDMKIFSLEALVRIKEGDKIHYP-GEFIELLERGVF 870

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            IK    +M+  + R +  W        + I +N+++ +  ++E  E +  +  +    P 
Sbjct: 871  IKEFEEWMIRELRRLLGKW-------NVPISVNLSAINFKNDEFMENLNLVCKEY---PG 920

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++ L  +E +++ N ER+R +LG  R+ G  + +DDFGT  S  SYL  +P D +K +  
Sbjct: 921  KLILEITERLLIENVERTRRILGDFRECG-LVAVDDFGTGYSSFSYLKELPLDLIKIDMM 979

Query: 887  LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +     + K +A++ +I+  A+ I    + + I     ++ L RMGC Y Q  ++A P+
Sbjct: 980  FIKSMLESSKDLALVEAIVFFAQKIGLKTLGEGIENAKQLEMLKRMGCTYGQGFYLAKPM 1039

Query: 945  GFNSILKLLKER 956
                + KLL+E 
Sbjct: 1040 PEEEVEKLLREE 1051



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           G  V  +      +        +LG +   +       L  +    R+  + I++  +  
Sbjct: 239 GIGVLIY--RDRIIYANKYAREVLGYSEEEIRNLSA--LDLVSKEYRETIQKIVERRLKG 294

Query: 475 RRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            R  + Y E +V+  + +  W++   + +    G    ++ I  DIT++K+  +     
Sbjct: 295 ERFPVVYKELKVKTKEGKSLWILAFSQTIL-YEGQYAGFV-IFVDITKRKRLEKLYKLL 351


>gi|253700019|ref|YP_003021208.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21]
 gi|251774869|gb|ACT17450.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M21]
          Length = 523

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 223/453 (49%), Gaps = 9/453 (1%)

Query: 510 LRYIGIANDITE--QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
              + + +D +E   + +   I   A +D LTG+ NRQ+F D L   ++ +         
Sbjct: 66  TVIVYLLSDKSEARHRATELSIREQAIRDGLTGLYNRQAFDDFLAQSIEYAKRR-RESVA 124

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENN 626
           ++ +D+D++K +ND  G   GD VL+   RR+ +  K   D++AR+ G+ F ++L     
Sbjct: 125 LLFLDLDRFKFVNDRRGHFAGDAVLIETARRLTDCAKRGEDLVARVGGDEFAMLLRHPEM 184

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  + ++++ P+ +    +  + SIG A + S      ++ K A+LA+  AK 
Sbjct: 185 PDGPGVVAKRVLEALSAPVQVDAETLKTSVSIGIAMFPSDADDPMQLFKMADLALNQAKQ 244

Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           +G +    +       R   + +++ L  A+   EL+LVY P +   +  ++G+EAL++W
Sbjct: 245 QGRSTFCFYGGEWREERDHTLQLEQGLLRAINYGELFLVYQPKLDTSNMRVIGVEALVRW 304

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP  G +  + F+ IAE+  +I  +  ++L+       +W        + + +N++   
Sbjct: 305 NHPHLGVLGPASFVPIAEKAGLIWPLTEWVLKSACSQAANWYRNEG-LDLNVAVNLSPSV 363

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L E ++  ++ +   P R+ L  +E  +M     +  +L RL+++G ++ +DDFG
Sbjct: 364 FSHQDLEEVIEKALNDSKLPPDRLTLEITEQSLMIYETEALGVLERLQRMGTNIQIDDFG 423

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LS L +  F  +K + S ++   ++    AI  +I+ M+K ++   IA+ +  E 
Sbjct: 424 TGYSSLSSLKHYHFQALKIDKSFVSDVVTSSDDAAIATTIMFMSKCLDMEAIAEGVESEA 483

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + L  + C Y+Q  + + PL  + +   ++ 
Sbjct: 484 QKEFLASIDCRYMQGFYFSRPLAASEMAAFVRR 516


>gi|307941589|ref|ZP_07656944.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307775197|gb|EFO34403.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 543

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 122/444 (27%), Positives = 225/444 (50%), Gaps = 11/444 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++ ++KK+    L  A  D LTG+PNR+   +     L  +  + N R  VM++DID +
Sbjct: 87  REVKKRKKAQSAALELAKHDALTGLPNRRKLHEAFQQ-LARTTVEGNYR-AVMMLDIDGF 144

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K INDV G A GD VLV+L  R+  +L+    +ARL G+ F I+     +  +IA FA  
Sbjct: 145 KPINDVYGHAFGDSVLVALAERLTGMLEEDGFVARLGGDEFAIVTAEYEHKDEIASFARR 204

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +      P ++  + ++V   IG A +     +++E+L+  ++A+Y AK  G +    F 
Sbjct: 205 LLTLFQTPFDIDGKSVSVGCGIGIAIFPDDGYSATELLRRGDIALYRAKSSGRSAYRFFE 264

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           V+   S      +++ L  A+ ++++ + Y PI+ L +  IVG EAL +W    +G ++ 
Sbjct: 265 VNMDASILHRTLLEQRLRAALRSNDIQVHYQPILNLKNVRIVGFEALARWHDADFGQVAP 324

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+ +AE+  +I  +   +L        +W +      + + +NI++  L D+ L   +
Sbjct: 325 AQFIPLAEDCGLITDLTYSVLREATTIAATWPEH-----LSLSVNISANLLADSTLPLKI 379

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T +SP R+ L  +ES ++ NP  +   L +L    I + LDDFGT  S LSY+ 
Sbjct: 380 VKILGETGFSPERLVLEITESALIKNPIFAGQTLSQLADAKIRIALDDFGTGHSSLSYIR 439

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P  TVK + S         +  AI+ +++ +AK +    +A+ I  +  +++L  +G 
Sbjct: 440 DFPIHTVKIDKSFTMKMSENPECRAIVDAVLVLAKGLGFHTVAEGIEQQDVLEKLNALGY 499

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
              Q     +     ++  L+K+ 
Sbjct: 500 PLGQGFLFGAATSAEAVETLIKQH 523


>gi|171058751|ref|YP_001791100.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Leptothrix cholodnii SP-6]
 gi|170776196|gb|ACB34335.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 729

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 234/577 (40%), Gaps = 22/577 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   +      +         + A   + D +   D     V        + G A  
Sbjct: 162 ARRMTGTIKDVTSQRHAEQSLRLMAHAFSSTRDALVVTDHDWRIVEANEAYCRLAGAAPN 221

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G +      +           L                +R  D     + + I  + 
Sbjct: 222 AVQGTVLTERLNLP---------ALAPLPIGDEAAWAEVTEMRRLDGLRVPVDVTITTLP 272

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +      +   NDI+EQ++    +   A  D +TG+PNR +  ++L   LD       
Sbjct: 273 GDHSGGTYLV-SLNDISEQRRVEARLEHLALSDAVTGLPNRSALENQLLRQLDREQA--- 328

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +M +D++  K++ND  G   GDD+L  L  R+  +L     ++R  G+ F ++L  
Sbjct: 329 --FALMYLDVEGVKEVNDSFGHDAGDDLLRQLADRLRTILPAGTFISRWGGDEFVLVLAP 386

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +   ++   A  M  +++ P+ +   EI+V  SIG          S  +L+ A+ AM  
Sbjct: 387 GSGETEVRSCAQTMIAALSPPMKVFLNEISVAPSIGAVLVPRDGRESGLLLRKADSAMQA 446

Query: 684 AKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK RG + +  +     +    RV +   L L  E +    V  P +      + G E L
Sbjct: 447 AKLRGRDSLAFYDGSLDTDSQRRVRMHNQLRLDAERNGFTFVAQPKVDREGHAV-GAELL 505

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W    +G +S  EF+ +AE++ +I  +    L       ++ R      P+ + +N++
Sbjct: 506 MRWPTAAFGMVSPGEFIPMAEKIGLIGLMGRHALHA--AAQLAARSLQVHQPLPVAVNLS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K LL   L   +     +   +P+ ++L  +ES ++ N      LL RLR+ G SL LD
Sbjct: 564 PKQLLQRGLDRQLLLACERAGVAPAMLELELTESALVDNMTIIEPLLQRLRQHGFSLALD 623

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL ++PF+ +K + S +        A  +L  ++ +   +  + +A+ + 
Sbjct: 624 DFGTGFSSLSYLRHLPFNKIKIDRSFVMDIDHDHRAARLLAHMVKLCGALGMSTVAEGVE 683

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E   K L  +G    Q  + A PL  +  +  L  R
Sbjct: 684 SESQFKALLDLGVQEFQGYYFARPLPVDEWVARLSAR 720



 Score = 84.6 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 52/163 (31%), Gaps = 13/163 (7%)

Query: 385 TVIQHVLATGYFSQGIFS---DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              Q  L      + +        R  LA+ GS   VW+WD   D V             
Sbjct: 38  AEEQLDLRNHELDEALRQRHDSEHRLRLALAGSRKGVWNWDADSDLVRI-DSFE--FDDK 94

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              M          +H +D D  R      +   R  L   FR+   +    W+ +R   
Sbjct: 95  PLPMTCSSSGLAELVHADDVDALRMAWRLHMSGARPDLDMSFRLCLGE-HVRWVRVRGSA 153

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAF-----QDNL 538
           +  +  G   R  G   D+T Q+ + + +   A      +D L
Sbjct: 154 LERDGKGLARRMTGTIKDVTSQRHAEQSLRLMAHAFSSTRDAL 196


>gi|330950174|gb|EGH50434.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 683

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 212/438 (48%), Gaps = 6/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A  D LTG+PNR      L  ILD +    + R   + + +D +K IN+
Sbjct: 239 RHEAENNLQRMAQYDFLTGLPNRLQLQTGLDRILDDAGRQQH-RVAGLCVGLDDFKGINE 297

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD +L++L  R+         LARL G++F ++  +     + A+ A  +   +
Sbjct: 298 QFSYQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYEAAELAQNILDEL 357

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  N  + +  S   
Sbjct: 358 EAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDS 417

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP+ G +    F+ 
Sbjct: 418 EMRRRRELEKDLREALPLNQLYLVYQPQISYRDHRIVGVEALIRWQHPEHGLVPPDVFIP 477

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L   EL   +  L+ 
Sbjct: 478 LAEQNGSIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHHAELPRVVNNLLQ 536

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  S LSYL  +P D
Sbjct: 537 IYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLD 596

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +    I+R+II + K++   +IA+ +        +   GC   Q 
Sbjct: 597 KIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYVVTEGCHEGQG 656

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    +L  LK+
Sbjct: 657 YLYSKPLQGRELLAYLKQ 674


>gi|317049552|ref|YP_004117200.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
 gi|316951169|gb|ADU70644.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           At-9b]
          Length = 699

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 213/436 (48%), Gaps = 7/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K +   +   A  DNLT +PNR     +L   +  +  +D     +M +D+D +K +N
Sbjct: 247 KLKHANNELRQLAMHDNLTTLPNRVLLEQQLDAAVKHATLNDQT-FALMFMDLDGFKAVN 305

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +LV++  R+   L+   ILARL G+ F  +L  +++ L+ A  A  +  +
Sbjct: 306 DTWGHHVGDCLLVAVAARLRNQLREDVILARLGGDEFV-LLSPDSDGLQAATIAQRLVNT 364

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P  L    + V+ S+G   +     +  EM+ NA+ AMYH KH G N    F  +  
Sbjct: 365 IDAPFELDRYSLRVSLSVGIVIFPLHGRSKQEMMFNADSAMYHTKHSGRNGWCLFEPAMS 424

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++ +  DL  A+E+ E+ L Y P  R     ++G EAL++W HP+ G +    F+
Sbjct: 425 TVAQHQLALANDLWHALEHQEMRLFYQPKFRAGGTLLMGFEALLRWQHPRRGLLMPDMFL 484

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+   I A+  +++    R +  W ++       + +N+++      +L + ++ ++
Sbjct: 485 PRAEKTGQIIALGNWVINEACRQLRQWHEE-GNSHWSVSVNLSALQFHQRDLIDSLREIL 543

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       + L  +E++ M +P+ S+  +  L ++G+ + +D+FG   + L +L ++  
Sbjct: 544 QRHSLPEGALMLEITETIAMRDPQFSQQRIAELHQLGVKVAIDNFGIGYANLLHLKHLEA 603

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       +   ++ ++I +A+++   ++A+ +  E   + LT +G D +Q
Sbjct: 604 TELKIDRSFINSLRADSEDATVVSAMITLAQSLNLRMVAEGVETEEQQRLLTGLGFDTLQ 663

Query: 937 DSHVASPLGFNSILKL 952
              +  P   + I + 
Sbjct: 664 GYLLGKPTPADRISEF 679


>gi|329902938|ref|ZP_08273315.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548552|gb|EGF33214.1| EAL/GGDEF/PAS/PAC-domain containing protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 634

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/567 (26%), Positives = 250/567 (44%), Gaps = 30/567 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDR---------VTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             +A   S D +     V DR                    G+ + ++ G   + +    
Sbjct: 62  YRMATECSIDGITILMAVNDRHGKTIDFIISDCNNRSGLFYGVDAKTLIGMRLSEVTAAP 121

Query: 458 --INDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMSNSNGDILRYIG 514
                    R+ L        G L+ E R RA+  N+  WM  ++               
Sbjct: 122 YFPETMKAMRSALQ------TGYLEDELRGRASHPNEPQWMHRQLARTG------TGIAM 169

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DI+++K     +   A +D LT +PNR      L   +  +     L   V+ ID+D
Sbjct: 170 TLRDISKKKIHERELWRMANEDGLTELPNRNWLTGFLPEAIRQARLAGRL-VAVLFIDLD 228

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND LG + GD++L    RR+  +L+  D +ARL G+ F +IL S  +    A  A
Sbjct: 229 DFKDVNDTLGHSAGDELLRVAARRLQSILRPGDHVARLGGDEFTVILSSIADRHAGALVA 288

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + ++ A P  L     TV  SIG + +      +S++LKNA++AMY AK  G N    
Sbjct: 289 QRIIEAFATPFELGHGTDTVGISIGISLFPDDGHDASDLLKNADIAMYCAKTAGKNRARF 348

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +      +      I+  L  A+E++E  L Y P I     +++GLEAL++W HP+ G +
Sbjct: 349 YESRMSAALTARVDIERALQCAIEHNEFVLFYQPRINAASGQLLGLEALVRWQHPERGMV 408

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+ IAEE  MI A+   ++E++ R I SWRD         +  ++ +      +  
Sbjct: 409 PPLEFIAIAEETGMILALGELVIEQVCRQIASWRDAGLPVVPVSVN-VSPRQFDKGNIKI 467

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                + +       +++  +ES +MG  E     L  +R +GI L LDDFGT  S LS 
Sbjct: 468 LFATYMLRHRIDAGLVEIEITESSMMGEEEELSHELRTIRALGIKLLLDDFGTGYSSLSQ 527

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + +  +    T +     R+I+ MA  +  T++A+ +     ++ L  +
Sbjct: 528 LQRLAMDVLKVDRAFTSELGKTTEGEVFFRAIVSMAHALGMTVVAEGVETVEQLRILQEL 587

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
            CD IQ   ++ P+  N I  LL + +
Sbjct: 588 DCDEIQGYLISRPVPANEIPALLLQPY 614


>gi|170078465|ref|YP_001735103.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
 gi|169886134|gb|ACA99847.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
          Length = 570

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 208/436 (47%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E I      D+ T +PN   F   L   +  +   +     V+ +D+D +  IN  L
Sbjct: 132 KLDELIEQLKNYDHTTSLPNLHLFQALLQKEIYNAQCRNQ-SLAVLFLDLDNFTNINTHL 190

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+ +L ++ +++ + +   D+LA+++ + F II     +   +  ++  +   I  
Sbjct: 191 GRDYGNLILRTIAQQLTQAIGDNDLLAKINTDTFAIIYPHLISLEDLEKYSQKLLTIINQ 250

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
            + +   +I ++A++G   +   K+   E++  AE A+  AK  G N    + V +    
Sbjct: 251 KVTVKHEDIYLSATMGITVYDEGKVEPQEIINQAETALNLAKEEGRNIYRFYSVETNEKL 310

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  ++ DL  A+E  EL L Y P I +    I G EAL++W H + G IS   F+ IA
Sbjct: 311 RSRFQLERDLYRALEREELELFYQPQIDVKTGNITGAEALLRWRHHEHGFISPGIFIPIA 370

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I+ ++L+        W      P + + +N++ K     +L + +  ++ +T
Sbjct: 371 EASDLIINISDWVLKTACYQNQQWTKD-GFPELCVAVNLSGKQFQQPQLVDDVSKILKET 429

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS+++L  +E +++ N + +   L  L  +G+   LDDFGT  S LSYL     D +
Sbjct: 430 SLKPSQLELEITEGLLINNIQNAVKTLEDLHNLGLITALDDFGTGFSSLSYLKRFSLDYL 489

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G    +  +AI  SII +A +++  +IA+ +     +  L  +GC+ +Q  +
Sbjct: 490 KIDQSFVRGIPLDKDDVAITNSIIALAHSLQIEVIAEGVETIEQVNYLKSVGCNKLQGYY 549

Query: 940 VASPLGFNSILKLLKE 955
            + P+      +L ++
Sbjct: 550 YSRPICAKDFAELWEQ 565


>gi|167587593|ref|ZP_02379981.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Burkholderia ubonensis Bu]
          Length = 611

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 244/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTAALEDLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + +R + + +  +  +   A D++  +     +      D +TG+
Sbjct: 121 MCIVKSL---TYPLDVEVRAVKSRHHGVDGFAVAAFDVSSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L     L+         ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 178 DNLSALVPALMRAQKLAEESGTC-AALVLLDLDDYQRINRALGYDAGDALLRETAQRLQA 236

Query: 602 LLKFPDILARLSGNRFGIILISENNSLK---IADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++  + + +            ++ ++  P     + + ++ASI
Sbjct: 237 LVTPDEQLARVASDKFAVVFTAADRARAGDIAGALGRRLQAAVRQPYVYNGQPVHLSASI 296

Query: 659 GFASWTSS------KITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +             S +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERAATHRAQHHSPLLRRADHALEQAKASGGNALAFHTPLDDRSDAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  IS T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQELALQ-YVAVNVSPQQFRDPRFTQSVRDAISLTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P R++ LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPVRAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 596 LAQRFEAQQ 604


>gi|87120227|ref|ZP_01076122.1| sensory box protein [Marinomonas sp. MED121]
 gi|86164330|gb|EAQ65600.1| sensory box protein [Marinomonas sp. MED121]
          Length = 914

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/695 (21%), Positives = 283/695 (40%), Gaps = 37/695 (5%)

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
            F   ++   +   +        +     L     Y    +  I  + +  + L  +  I
Sbjct: 225 AFTEEFVLVKKQFVRGNANQDLSLVFWVALPKAQAYEQAQSEFIKSLVIILVGLLVSGLI 284

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +    K              +FI  +   +   +  D        +  +   +  I    
Sbjct: 285 LILSAK-------------FLFIRPVSSLLNEFEVEDKSKSTILGIEDINESIHQIALRQ 331

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q   +     Q +     +Q + +      + + D   + ++ T    +   +    + 
Sbjct: 332 QQTKQSLSITEQELIQAYHKQDMILKSVSVGIVELDESLNILSITRRCQSYYRVLEKDIK 391

Query: 447 GPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRA-------ADNQFHWMIIR 498
                 L     +   ++F+ I  +     +     E   R        +D    +    
Sbjct: 392 NKHLEALNEFTQSYQVNDFQCIYQAIDTQSKDVDVIEVISRTDRKMTQYSDAHTLYFKWA 451

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I  +    G    ++ +  DITEQ+   E +   A  D LT +PNR + +  +   +   
Sbjct: 452 ISRVRLE-GSNTHWVAVVEDITEQQLKQENLAERASTDWLTKLPNRYAIMKMIDDSIRRD 510

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A +     T+++ D++ +K IND  G  VGD ++++L++R+  LL   + + RL G+ F 
Sbjct: 511 ADNG---FTLVLFDLNGFKLINDSFGHDVGDALIIALSQRMKSLLLDDEHIGRLGGDEFL 567

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + L       +I      ++     PI +++R    +AS G + +      +  +++ A+
Sbjct: 568 LYLPRRQAINRIQ----LLQHCFFEPIEVMKRTFNCSASAGISVYPKDGTDALSLIRCAD 623

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAMY AK    N+   +          R  I+  +  A+ + E  L Y P++   + EI+
Sbjct: 624 LAMYEAKQDPKNNSVYYDTGLEKKVIKRYEIESAIRYALLHEEFELHYQPVVNPSNHEIL 683

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EALI+W     G IS + F+ IAEE   I  I  F+LE++  D+   R+      I I
Sbjct: 684 SVEALIRWHSSSLGTISPAFFISIAEESGYINLIGHFVLEQVLADLAQLREVYG-EHISI 742

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++   L D  L E + +L  +     S + L  +ES ++   E +   L +L+  G 
Sbjct: 743 NINLSPHQLKDVILIERLTSLAQQDN-KASALILEITESTLVD--EEAVHCLTQLQTQGY 799

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            + LDDFGT  S LS++  +P D +K + S +  S  +E+ + +L++II MA+ +E  II
Sbjct: 800 RIALDDFGTGFSSLSHIARMPIDILKIDQSFIAQSKHSERDLVLLKNIIAMARGLELKII 859

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           A+ +  E    +L   GC ++Q    A P     +
Sbjct: 860 AEGVEYEEQANQLIEFGCFHMQGYLYAKPKPLAEL 894


>gi|326388893|ref|ZP_08210475.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206493|gb|EGD57328.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 769

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 208/447 (46%), Gaps = 11/447 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-NLRPTVMVIDIDKYKKI 579
           E   S      NA  D ++G+PNR  ++ RL   L      +      V  +D+D +K +
Sbjct: 319 ELLVSEAQARHNALHDGMSGLPNRMYYMQRLHEELARHLAGEVRGDVFVAYLDLDGFKGV 378

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VGD+++  +  R+  +L   D +AR  G+ F ++  +E    +   F   +  
Sbjct: 379 NDALGHHVGDELVRQVAMRLRHVLPAGDFIARFGGDEFVLMRCAEGGRAQADAFGQDVMT 438

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P  ++   I VT S G +   S      E+L+ A++A+Y AK  G      F    
Sbjct: 439 LMREPFLVVGHTIEVTCSCGISWGPSHSEDPGELLRRADIALYRAKQLGRARYRRFTRDM 498

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S ++   ++ +L  A+   EL + Y PI+ + DE IVG+EAL++W+HP+ G I    F
Sbjct: 499 DASVKLRSELEVELRRAIARDELTMAYQPIVNVGDERIVGVEALLRWNHPERGAIRPDLF 558

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  ++  +  +ML R+  +   W      P   I +N++   ++       M  L
Sbjct: 559 IPIAEQSGLMTVLGTWMLRRVFTECRDW------PTCDISVNLSPLQIMAGNFVATMAGL 612

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P R+ L  +E +++   E    +LG L  +G  + LDDFG   S LSYL    
Sbjct: 613 VEETGIDPRRVVLEVTEGMMLDRSEHVATMLGELNAMGFRIALDDFGIGYSSLSYLRSFQ 672

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F+ +K + S ++         AIL +I  + +++   ++A+ +  +  ++ +   GC  +
Sbjct: 673 FERIKIDRSFVSNIESDTDAHAILCTIASLGRSLRMKVVAEGVETDSQLQLVQAAGCGLV 732

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKN 962
           Q       +  N    LL ++    + 
Sbjct: 733 QGYLFWKAMPGNEARNLLVDQLAEAER 759


>gi|329895341|ref|ZP_08270966.1| putative signal transduction protein [gamma proteobacterium
           IMCC3088]
 gi|328922354|gb|EGG29698.1| putative signal transduction protein [gamma proteobacterium
           IMCC3088]
          Length = 638

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 112/578 (19%), Positives = 236/578 (40%), Gaps = 14/578 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              ++         +  + S  ER  + +  +  + W +DI            ++L    
Sbjct: 60  TSALLAQTKLAEDNASRLNSAVERLEIILTAARAVSWTYDITHHTFRVNGGDTSLLQFKL 119

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +    +     +H +D   FR      + Y + ++    R +  D+Q+ W  +     
Sbjct: 120 DEVV-DFKKLKQALHPDDHAIFRETFSE-LSYLKSKIDIRLRFKDQDDQYRWFALSAVMS 177

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +   D +  +G   D+ +  K  E     +  D+LT + NR  F           + D 
Sbjct: 178 RSEAQDPI-LLGALIDVQDHVKREEEAWALSNIDSLTQVANRHYFEQLFAKA-KQQSQDF 235

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               T+ ++DI++++ IN+  G    D  L +L   + +  +    +ARL+ + F I+  
Sbjct: 236 GTGFTLGLVDINEFRLINESFGQRTADWTLQALADLLVDRFEDKGSIARLAADEFVILFN 295

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S+  + +  D    +  SI          + +T S G A +         +L+  + A  
Sbjct: 296 SDVKATQAFDHLEQLVTSIDHFELNNGERVAITLSAGAACFPYDGQQFDNLLQAVQTANQ 355

Query: 683 HAKHRG----GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +K          +    +   R     I+++L  AV   E      P+    D + +  
Sbjct: 356 QSKQSRFSSPKCVMYHPGMDVSRQRDRNIRQNLHRAVTQDEFSFALQPL-ATKDGKWLAA 414

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W        S+ +F+ +AE   +I  I  ++++   + + + +     P  ++ I
Sbjct: 415 EALLRWTKGPR-YCSTLDFITVAESCGLILPIGEWVIKNAIQQLSAIQK--IRPDFWLSI 471

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+       +L   +Q     T    SR+ +  +ES+ + +  R +  L R++ +G ++
Sbjct: 472 NISPAQFQHQDLASTIQGAAEGTEVDLSRLAIEVTESLFLDDLTRVQNSLDRIKALGCTI 531

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAK 916
            +DDFG+  S L Y+  +P D +K +   +   TE   +  I ++II M+ ++ + ++A+
Sbjct: 532 AIDDFGSGYSSLGYVQQLPIDYIKIDKRFVDQITEHSESHNITKAIIDMSHSLHSKVVAE 591

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +   + ++ L  + CD +Q  + A P+     L  LK
Sbjct: 592 GVETLLQVEALAALNCDAMQGYYFARPMAPEQFLAELK 629


>gi|313900540|ref|ZP_07834033.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312954602|gb|EFR36277.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 734

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/556 (20%), Positives = 226/556 (40%), Gaps = 25/556 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            S  +  S D ++  ++  D      +  +     L S  +H     W   IH  D+  F
Sbjct: 196 LSALMQSSDDYIYVCNMKEDPSCFRYSRAMVEEFDLPSEIVHDAANVWGARIHEADQKIF 255

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                     R      E+R R    ++ W+  R     + +G  + + GI  ++  +K 
Sbjct: 256 LEGNQEIADDRVDFHNVEYRARNRRGEWVWLRCRGHVERDEDGQPVLFAGIITNL-GRKN 314

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +         D L+G  N+    D L  I+            +M++D+D +  IN +  
Sbjct: 315 KI---------DYLSGQFNKYELEDTLQMIVAK-----EEHFFMMILDLDGFSSINKLYN 360

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD+VL    + I  +L     L R  G+ F ++L S  +S +IA F   +++ +   
Sbjct: 361 HQFGDEVLAKTAQIIQSVLPEYARLYRNDGDEFIVLLRSCTDSNEIAGFYHRLQQELGHQ 420

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  ++   T S G A +         + KN   A+  +K  G N +  +      ++ 
Sbjct: 421 RILNGKKYHCTISAGCACFPKDGDDMMSLTKNVGYALEASKRNGKNRLTFYEKKMSETEL 480

Query: 705 VMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +   E L  ++E+      L Y P +      I+  EAL +W    +GN+S   F+ +
Sbjct: 481 QELDMLEQLRYSMEHDFEGFSLQYQPQVEADSGRIIAAEALARWHSSMYGNVSPVVFIPL 540

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  MI  I  ++ E   R   +W  +   P   + +N++   L +      M+  + K
Sbjct: 541 LEKSGMILTIGKWIFETALRQCAAWLKKC--PDFCVSVNLSYLQLYEEGFITFMKETLKK 598

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I +  +ES ++ + E  + +   +R IG+ + +DDFGT  S L  L   P D 
Sbjct: 599 CHVPSRNIIVEMTESYMVKSSEELQAIFQEIRSIGVRIAMDDFGTGYSSLGVLKNSPADI 658

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +   +     +E     ++ ++ +  ++   ++ + +  + + +++  MG D IQ  
Sbjct: 659 VKIDRIFIKDILNSEFDATFIQFVVRLCHDVNIRVLLEGVETKAEYEKVKTMGLDDIQGY 718

Query: 939 HVASPLGFNSILKLLK 954
           +   P+    + +LL+
Sbjct: 719 YFGKPMHPEKLEELLR 734



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LT + N+++  + L + +  +         V+ +DI+    IN   G   GD +L  
Sbjct: 15  HDHLTALWNKEAGEELLDSCIRTAKAQSTSFLAVL-LDINDLDTINKRCGHQEGDRILQR 73

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  +I   L+  D   RL G+ F ++     +  ++ +    +   +       E   T+
Sbjct: 74  VAEKIRSSLQTGDFAIRLGGDEFLLVFQQL-SKKEVRNLLDQILNELEE--ESREFPYTM 130

Query: 655 TASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGG 689
               G     +    +  +++  A+  MY +K R  
Sbjct: 131 GFCFGITQIMADMELSVKKIIMRADDEMYLSKRRYH 166


>gi|294815266|ref|ZP_06773909.1| Integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443621|ref|ZP_08218355.1| putative integral membrane phosphodiesterase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294327865|gb|EFG09508.1| Integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
          Length = 926

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/761 (19%), Positives = 300/761 (39%), Gaps = 43/761 (5%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
           +   L        + + + +   + A A + L Y  +D   +S ++ L        R+  
Sbjct: 152 IGGSLLTLSWSLALAHTTRVQGESVAPAALSLAYPLLDIVLVSMVLALHFRRSAANRSAV 211

Query: 258 EIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
             A+ +  +  L   L  +   R   + G +  +G    ++L   + +    +A +A   
Sbjct: 212 NTAIGALALTVLCDALFTSPLLRESYRSGQLLDAGWFAGSLLLAYAPWGARRSAELAGPV 271

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
             +         +            L P           L+  +  R  + ++   L G 
Sbjct: 272 RGARPTRPVGGSLAA----------LTPYLAAAVCTLGILYNVVQGRAVDRVVV--LTGC 319

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            V++ +++   ++  +L     +Q +          V GS D++            +P  
Sbjct: 320 GVVLALVVRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPGGTLRYVSPAA 377

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQ 491
           + + G  +  M G   +    IH +D       +  F+          + E R R+    
Sbjct: 378 SGVYGRDAEDMIGTPLS--SLIHPDDLGRVLHEVRRFLASSSSSEPTARVECRFRSGRGD 435

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           +  +   +             I  + D+TE+ +    +  +A  D LT +PNR  F +R+
Sbjct: 436 WLNVESTVNRHQG------GLIFNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTERV 489

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L       +    V+ ID+D +K +ND LG   GD++L+   +R+G+ ++  D  AR
Sbjct: 490 GQAL-TGRRAGDPGTAVLFIDLDGFKGVNDRLGHQAGDELLIQAAQRLGDSVRSGDTAAR 548

Query: 612 LSGNRFGIILISE------NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
           L G+ F  +++ +      +   ++ + A  +R +++ P  +  +++ V ASIG A +  
Sbjct: 549 LGGDEFAALILGDGIRDQASRESQVVEIAERLRLTLSQPYRIDGQDVRVAASIGVA-FAE 607

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723
             I  S +++NA+LAMY AK  G + VE +             +   L  A+   E  L+
Sbjct: 608 KGIAPSVLMRNADLAMYRAKAGGKDRVELYAPQMQAEVVRRTELAARLRSALHEGEFALL 667

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P++ L    I  + A  +W   +    + +EF+ ++ +      +  ++LE       
Sbjct: 668 HQPVVSLTTGRIEAITAQARWRSAQGILFTPAEFLRVSGDTDRTAELGRWLLEEAVEQAA 727

Query: 784 SWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                 +  P  + + I ++ LLD  +    ++AL+++   +   + +  SE       +
Sbjct: 728 ERDRLGHRVP--VSVRIPARRLLDRSMPLTTVEALLNRYGLASGALIVELSEYDPRIPFD 785

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILR 900
                L  LR++G+ + LD FG+  +  + L  +P D +K +  L+ G  E      I  
Sbjct: 786 ELEQRLVGLRRLGVRVALDGFGSGHAAFTALRRLPVDMLKLDRELVEGIVESARLHKITS 845

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            ++ +A ++    +A  +     I  L  MGC + Q    A
Sbjct: 846 GLLRIACDLGLQSVADGVDAPEQIIALRAMGCTHGQGMAFA 886


>gi|260461973|ref|ZP_05810218.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032220|gb|EEW33486.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 514

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 195/417 (46%), Gaps = 10/417 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+  R + + ++      ++        ++ IDID++K+IND +G   GD+++ 
Sbjct: 84  HFDKLTGLLGRPAMVGKIAEAACTTSRTGEPVF-LIDIDIDRFKQINDAIGYTQGDELIR 142

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + T+R+   +    ++ R+    F ++L        +      +   +  P  L   + +
Sbjct: 143 AFTKRLQSCVPARALIGRIGAGEFAVLLPDHQIPGTMESMVERLIDEMMEPYELSSHQQS 202

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711
           V+ S+G  +     +    +L+ + LA+ +A+  G  +   F          R  ++ +L
Sbjct: 203 VSLSVGIVAMPKDGVDPVLILRRSNLALQNARASGVGNWSVFDSEMGRVADYRQWVESEL 262

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A E  +  L Y P + L    IVG EALI+W+HP+ G I   EF+ IAEE  MI  I 
Sbjct: 263 HTAFERGDFDLHYQPQLDLPTGRIVGYEALIRWNHPERGMIPPMEFIQIAEETGMINPIG 322

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +   D     D       F+ +NI+    +  +    ++  +  T   PSR++L 
Sbjct: 323 EWVLRKACSDARHLPD-----DCFVAVNISPVQFMTKDFVGIVRDAMRATGIKPSRLELE 377

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+ +M + +R+  +L  L ++GIS+ +DDFGT  S LSYL    F  +K + S ++  
Sbjct: 378 VTETAMMQDRDRAAAILKELAEMGISVAVDDFGTGYSNLSYLIDFSFGKLKIDRSFVSRI 437

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  A++ +I+ +++ +  +IIA+ +  E     L   GC+ +Q      P   
Sbjct: 438 DTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGCEVVQGYLFGRPAPL 494


>gi|255100544|ref|ZP_05329521.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 697

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/554 (19%), Positives = 225/554 (40%), Gaps = 22/554 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               + G+ + ++  ++       +P    +  L    +  P+  W   +H  D + F  
Sbjct: 157 YDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVKNPLVYWKKIVHPEDWNRFYK 216

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   +      EFR +    ++ W+  R + M +  G+   + GI   + +Q K  
Sbjct: 217 SNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKI- 275

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D+LT + N   F+      +     +   +  ++++DID +K +N++    
Sbjct: 276 ---------DSLTQLLNYHEFMSVFEDKISNPMIE---KLCIVLLDIDDFKNVNEMYDRD 323

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+++ +L + +  +L     L +L G+  GI++ +     +I      ++  I     
Sbjct: 324 FGDNIIKTLAQSVQSILPDNAELYKLDGDEMGILVDNV-EENEILTLYNQIQNMIIHLQL 382

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
             +  + +T S G   +     T  E+ K A  ++ +AK  G N +  F       +   
Sbjct: 383 WRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYS 442

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +  DL  ++ +      L + P +     +I+G+E L++W + K   IS  EF+ I E
Sbjct: 443 LEMMRDLKASINDDFRGFSLRFQPQVDTESHKIIGVEVLLRWTNDKCKAISPLEFIPILE 502

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  MI  +  ++L    R    W D        + +N+++  +L++   E +  +I    
Sbjct: 503 ENDMINIVGAWVLRMALRTFRKWIDYYPF--FKVSVNVSAVQILEDTFIEDIVKIIDDEN 560

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +    + L  +ES  + N    +     L+ +GI + +DDFGT  S L  L + P D VK
Sbjct: 561 FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVK 620

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     ++     +  I+ +  ++   +  + +  + +   + ++  DYIQ    
Sbjct: 621 IDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLF 680

Query: 941 ASPLGFNSILKLLK 954
             P     I  LLK
Sbjct: 681 GKPQTATEIFDLLK 694


>gi|86750341|ref|YP_486837.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86573369|gb|ABD07926.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris HaA2]
          Length = 872

 Score =  423 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 115/478 (24%), Positives = 224/478 (46%), Gaps = 13/478 (2%)

Query: 485 VRAADNQF-----HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           ++A D +       +      P       +   + +     E+K++   I   A+ D LT
Sbjct: 364 IKAKDGRVIGTFAFYFRECRAPSRWHERIVDACVHLGALAIERKEARAQIARLAYYDMLT 423

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    D +                +  +D+D +K +ND LG A GDD LV+  +R+
Sbjct: 424 GLPNRARLRDLIAQATGTCP--PGQHVALAFLDVDNFKDVNDTLGHAAGDDFLVAFAQRL 481

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            E ++  D+LARL G+ F I++    N+ +    A  + +++A+P+ +   ++ ++ASIG
Sbjct: 482 REQIRPCDMLARLGGDEFVIVMPG-RNASEAGLVASRIAEALALPLGIGTWQVPMSASIG 540

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVEN 717
            + +  +      +++ A+ AMY AK  G +    F      +    +     L  A+  
Sbjct: 541 ISLYPDNATDIDVLIRQADTAMYQAKRSGRSTYRFFSEDMNGAAEERMAYSAALRNAITF 600

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L L Y P I   D  I G+EAL +W+ P  G +S ++F+ +AEE  +I+ + L+ +  
Sbjct: 601 DLLELHYQPQIGTRDGAIHGVEALARWNDPVLGAVSPAKFIPLAEECGLIEQVALWSIRA 660

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R + +WR      P  + +N++  +  +  L + +  ++++    P  + L  +E V+
Sbjct: 661 ACRQMAAWRALGLDIPC-VSVNLSPINFQNPNLADLVSDILAELRLPPEVLMLEVTEGVI 719

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895
                 +   +  LR++G+ L+LDDFGT  S LS L  +P   +K +   M     +   
Sbjct: 720 QNERSLAIETMNALRRLGVGLSLDDFGTGYSSLSQLAQLPIRELKIDRGFMRDIAHQSSA 779

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            A++ +++ + ++++ ++IA+ +  +     L  +GCD +Q    A  L   +    L
Sbjct: 780 RAVVTAVVRVGQSLQLSVIAEGVETDEQFALLAELGCDAVQGFLYAPALTPAAFELWL 837



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 22/179 (12%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            +     I   +        + +  ER S A       V   D     + T P    + G
Sbjct: 118 AIAFVRDITQEVEQREGIAALMTVAERASRA-------VLVTDRDDIIIYTNPSFTRLFG 170

Query: 440 LASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            ++    G      L   H     N RTI            + +  + A D    W+   
Sbjct: 171 YSAEETKGRHAGELLAGRH----SNRRTIASPAPDIDDEGSEQQILLYAKDGGEIWVSAE 226

Query: 499 IRPMSNSNGDILRYIGIANDITE--QKKSLEGILCNAFQD--NLTGIPNRQ-SFLDRLT 552
           ++ + +  G     + +  DI+E  Q ++L+ +  +A  D   +T + +R   F++++ 
Sbjct: 227 VKGLRDGRG-----VALLTDISESVQLRTLQQLTLSALADEIPITELADRMCRFVEKIA 280



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 3/122 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R + A+  + D V   D             +  GL    + G     L   H        
Sbjct: 15  RLA-ALERTRDAVVIVDHDGHLRYVNAAAESTFGLDRTGLLGRAVGALG--HDELGARIV 71

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               + V   R   Q  F +         +   +       G     I    DIT++ + 
Sbjct: 72  QAAFAAVDPDRPLGQAGFEITIGRQDRRAVRAAVSVSRAQVGSGDYAIAFVRDITQEVEQ 131

Query: 526 LE 527
            E
Sbjct: 132 RE 133


>gi|332669348|ref|YP_004452356.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
 gi|332338386|gb|AEE44969.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
          Length = 1213

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/677 (20%), Positives = 276/677 (40%), Gaps = 63/677 (9%)

Query: 309 SIARITLASIVLYYTYFIIYHG-----------MKGYERAVLLIPAWILIFIWFIGLWMA 357
             A +++A++ +     ++              M+  E       A +    + +   + 
Sbjct: 13  YFAVVSIAAMAVLGCALVVVSATVMERQSTRDGMRSAESVRSYATAQVPTDAFVLATALT 72

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGERQ-SLAVLGSG 415
                 ++ ++ A+ G    +V +  +      + +T   +   F DGER  ++   G  
Sbjct: 73  ---PDQDEAVRQAVAGFADSVVEVRLWAQDGTLIFSTADRTTSGFPDGERLDAVMASGEP 129

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI----------NDRD--N 463
           D     D+  D              A G++ G  R+ L                DR    
Sbjct: 130 DARVVSDVRGD--------------APGTLSGTQRDVLDVYVPVTAAQTLRTTEDRPSSE 175

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                +  + +             A       +  +         +L +  +       +
Sbjct: 176 VVGAAEVMLDHTGSA--------HAVGDAVRTVGIVVGGGLVALWVLLFRTVLTTSRRLQ 227

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +       A  D+LTG+PNR+   DR+   +  +  D   R  +M++DID +K IND L
Sbjct: 228 ATALENARLALLDSLTGLPNRRMLADRMRRTIAEAHED-GTRVGLMLLDIDHFKDINDSL 286

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +  R+   L+  D++ARL G+ F ++L    +       A  +R     
Sbjct: 287 GHDRGDELLEQVAERLRGALRGNDVVARLGGDEFAVLLPDVRSVENAERLARRVRGLFTT 346

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRS 702
           P  L E  + V  S+G A        SS +++ A++AMY AK HR G  V S        
Sbjct: 347 PFMLGELPLHVETSVGVACLPDHADDSSSLMRTADVAMYAAKHHRTGVAVYSLDEDDSSP 406

Query: 703 DRVMIKEDLCLA-----VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            R+++  DL  A      E  +L + Y P I L     VGLEAL++W H   G ++ + F
Sbjct: 407 ARLVLLGDLHRALDTETDEPRQLEMHYQPKIDLTTGSTVGLEALMRWRHETRGLLAPASF 466

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  F L    R +  W  +    P  + +N+++ D+    + + ++AL
Sbjct: 467 IPLAEQSGLIHDVTRFALTTCVRQLAHWSREGRTTP--VAVNLSAHDVTTTAVVDLIEAL 524

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++       +++  +E+ ++ +  R   +L RL ++G+ + +DDFG   + +S L  +P
Sbjct: 525 LTEHAVPADLLEVEITETALVADRSRVVPVLERLGELGVRVAIDDFGIGNTSISQLRDLP 584

Query: 878 FDTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            D +K +   +        E    ++R+++ +A +    ++A+ +  E     L ++G D
Sbjct: 585 VDELKIDRLFVADLQAGGREGSEVVVRAMVDLAHSFGLRVVAEGVEDEHTAGILAQLGVD 644

Query: 934 YIQDSHVASPLGFNSIL 950
           + Q    +  +  + + 
Sbjct: 645 HAQGFLYSRAVPPSDLT 661


>gi|330952260|gb|EGH52520.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 545

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 213/442 (48%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGSVALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDALGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRATPERALQMAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQQRGLLPPSE 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLNR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S   +L  +
Sbjct: 394 LIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 454 PIALLKIDMGFVAQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSFGCNQ 513

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+ +
Sbjct: 514 VQGYLISRPLPVEELVTYLRSQ 535


>gi|146277007|ref|YP_001167166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555248|gb|ABP69861.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 774

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/619 (23%), Positives = 261/619 (42%), Gaps = 39/619 (6%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                D+     +   +L          +H L+     Q +  D       +  S   + 
Sbjct: 143 GLPPEDLAVLRSLVEAMLAAAEQRDHEGRHALSL----QALQDDRMLLEAILRTSNSAII 198

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---------PYIHINDRDNFRTILDS 470
            +D     V    + A +LG     + G     +           +   D    + + + 
Sbjct: 199 AFDGEARIVFANEEAAGLLGTELERLQGCTLEGIGCRLLTRDGEPLAPEDMPVRQAMAEG 258

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-IANDIT-------EQ 522
                   +     +  AD +   + +   P++  +G     +    +D+T         
Sbjct: 259 HALRGLHHV-----LIGADGRQRILSVNAAPVAGGDGGGGVRVVATVDDVTGQVSADSAL 313

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +L      AF D LTG+ NR+  ++ L   L + A  +N    ++ IDID  +++N  
Sbjct: 314 RTALAEAHQLAFFDPLTGLYNRRGVVEVLRDCLQICAR-ENSSLALLYIDIDGMRQVNGT 372

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-----ISENNSLKIADFAIAM 637
            G  +GD VL +L  R+ +L      L R+S + F +          +        A  +
Sbjct: 373 RGHWLGDRVLQALAARLEDLRHDGCDLGRISADEFVLTCSESHPDPASAVAAAEVSAERV 432

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P+ +    I +T SIG A+ T+ + T   +LK  +LA+  AK  GG+   ++R 
Sbjct: 433 LTELRKPLVVDGLTIEITVSIGLAAITA-EDTVEGLLKGVDLAVMAAKAAGGDRACAYRP 491

Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWGNIS 753
              +    RV + ++L  A+   E  + + P++RL D   E+VG EALI+W HP  G +S
Sbjct: 492 DMEQDMVGRVALAQELREAIRRDEFRIFFEPMVRLGDGGLEVVGQEALIRWQHPVRGLLS 551

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE   I+ I+ ++L   A ++  W D      + + INI+S   L +E  + 
Sbjct: 552 PVAFIPFAEETGFIRDIDRWVLRAAALELARWADDPERRHLRLSINISSAQFLSDEFGQM 611

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++++T   P+R++L  +E  ++ N   +R  +  LR +G+S+ LDDFGT  S LSYL
Sbjct: 612 VREVLAETGVDPTRVELEVTEGTLLSNLGLARATMMDLRSLGLSIALDDFGTGFSSLSYL 671

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S + G +E      IL  II +A  +   ++A+ +        L   G
Sbjct: 672 RDLPVDVLKIDRSFLGGLSESKANRTILEGIIGLASGLGVALVAEGVETTAQFAWLRAKG 731

Query: 932 CDYIQDSHVASPLGFNSIL 950
           C   Q      P     + 
Sbjct: 732 CRTFQGYLFGRPTDAPQLT 750


>gi|330980700|gb|EGH78803.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 409

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 116/406 (28%), Positives = 207/406 (50%), Gaps = 11/406 (2%)

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++     S 
Sbjct: 1   MFLDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQ 60

Query: 629 K-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 + + A  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y 
Sbjct: 61  DEVTQQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYR 120

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +   +E I G EAL
Sbjct: 121 AKDCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEAL 180

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILIN 799
           ++W HP++G ++  +F+ I EE  MI  +   +L    +       Q  +P     + +N
Sbjct: 181 LRWQHPEYGLMAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVN 240

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I+ +  L ++  E ++  ++      S +KL  +E +V+ N + + L +  L+ +G+S  
Sbjct: 241 ISPRQFLQHDFIERVERSLTLHRLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFA 300

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL  +P DT+K + S +    +      I+R+I+ MA+++   +IA+ 
Sbjct: 301 MDDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEG 360

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +     +  L ++GC   Q    + PL       LL+ + P  +  
Sbjct: 361 VETSEQLAFLEKVGCYTYQGYLFSEPLPGPQFESLLQLKRPAQQTA 406


>gi|254975071|ref|ZP_05271543.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255092460|ref|ZP_05321938.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314198|ref|ZP_05355781.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516877|ref|ZP_05384553.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649978|ref|ZP_05396880.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260683130|ref|YP_003214415.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686728|ref|YP_003217861.1| putative signaling protein [Clostridium difficile R20291]
 gi|306520054|ref|ZP_07406401.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260209293|emb|CBA62663.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212744|emb|CBE03865.1| putative signaling protein [Clostridium difficile R20291]
          Length = 697

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 108/554 (19%), Positives = 225/554 (40%), Gaps = 22/554 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               + G+ + ++  ++       +P    +  L    +  P+  W   +H  D + F  
Sbjct: 157 YDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVENPLIYWKKIVHPEDWNRFYK 216

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   +      EFR +    ++ W+  R + M +  G+   + GI   + +Q K  
Sbjct: 217 SNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGEPSIFAGIMTQLGKQNKI- 275

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D+LT + N   F+      +     +   +  +++++ID +K +N++    
Sbjct: 276 ---------DSLTQLLNYHEFMSVFEDKISNPMIE---KLCIVLLNIDDFKNVNEMYDRD 323

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+++ +L + I  +L     L +L G+  GI++ +     +I      ++  I     
Sbjct: 324 FGDNIIKTLAQSIQSILPDNAELYKLDGDEMGILVDNV-EENEILTLYNQIQNMIIHLQL 382

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
             +  + +T S G   +     T  E+ K A  ++ +AK  G N +  F       +   
Sbjct: 383 WRKYGLNITISAGCVIYPKHGDTVKELYKCASYSLQYAKEHGKNRLVFFSQEILKNKMYS 442

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +  DL  ++ +      L + P +     +I+G+E L++W + K   IS  EF+ I E
Sbjct: 443 LEMMRDLKASINDDFRGFSLRFQPQVDTQSHKIIGVEVLLRWTNDKCKAISPLEFIPILE 502

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  MI  +  ++L    R    W D        + +N+++  +L++   E +  +I    
Sbjct: 503 ENDMINIVGAWVLRMALRTFRKWIDYYPF--FKVSVNVSAVQILEDTFIEDIVKIIDDEN 560

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +    + L  +ES  + N    +     L+ +GI + +DDFGT  S L  L + P D VK
Sbjct: 561 FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDIVK 620

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     ++     +  I+ +  ++   +  + +  + +   + ++  DYIQ    
Sbjct: 621 IDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQIKPDYIQGYLF 680

Query: 941 ASPLGFNSILKLLK 954
             P     I  LLK
Sbjct: 681 GKPQTATEIFDLLK 694


>gi|86361180|ref|YP_473067.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
 gi|86285282|gb|ABC94340.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
          Length = 588

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 129/584 (22%), Positives = 255/584 (43%), Gaps = 30/584 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           + I         +  + +   +  LA+  SG  +W  +I R++      +  I G+    
Sbjct: 9   SEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKLIYGVPKAP 68

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +      WL  IH +D      I    +  +      EFR+   D    ++  R R   +
Sbjct: 69  LD---VIWLDSIHPDDLVATNEIFLRAIETKSD-YASEFRIIRPDGAIRYLRSRARYFVD 124

Query: 505 SNGDILRYIGIANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + GD   ++G   D+TE        ++S       A  D+LTG+ NR+SF       L  
Sbjct: 125 AAGDPC-FVGAEWDVTEDVLLNKELERSRAEARFAADHDHLTGLLNRRSF----DFALSE 179

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A  ++++  ++ ID+D +K+IND  G AVGD VL  ++  + E +   D  ARL G+ F
Sbjct: 180 LARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLSHVSNILLEAISAGDFAARLGGDEF 239

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +++  E+   +       +++ +  P+ + ++ + V  SIG AS        + +L  +
Sbjct: 240 AVVIT-EDECDRTIAVLDHIQRRLGSPLPVGDQTLIVRCSIGVASAM--SADFARLLSQS 296

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LA+YHAK  G N  E F      +  +   + +DL   +   ++   Y   +      +
Sbjct: 297 DLALYHAKRNGRNRAEIFSDEMASTLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRV 356

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W HP  G ++ + F+ IA    ++  ++  +L+ +  D+ S    + +  I 
Sbjct: 357 NGVEALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVLSDMKS--SASPLKGIR 414

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKI 854
           + +N+++  L D EL       +      P R+     E++ + +  ++ R  +  ++  
Sbjct: 415 VSVNLSADRLDDPELTAK----LDGYDIPPGRLSFELIETIFLDSLSDQVRQNIQAIKSF 470

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           GI + +DD G+  + L  L  +  D VK +  L+T   +      ++ S++ +A+ ++  
Sbjct: 471 GIDIEIDDLGSGHASLLGLLELRPDRVKIDRQLVTPILQSVPSCRLVGSLVDIARALDME 530

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +IA+ +        L  +G   +Q      P  F  +   L + 
Sbjct: 531 VIAEGVETLEHANVLAALGVHTLQGYAFGRPQSFADLSARLDQE 574


>gi|117928641|ref|YP_873192.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidothermus
           cellulolyticus 11B]
 gi|117649104|gb|ABK53206.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidothermus
           cellulolyticus 11B]
          Length = 746

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 122/459 (26%), Positives = 232/459 (50%), Gaps = 9/459 (1%)

Query: 499 IRPMSNSNGDILRYIG--IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
            R   +++ + L      +   IT+   +    +  AF D+LTG+ +R  FLDRL   L 
Sbjct: 276 ARLWRDADREALGVFADHVTLAITD--ATTVEAMNRAFHDSLTGLASRALFLDRLNLGLA 333

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +A        ++ ID+D++K +ND LG A GD +LV +  R+   L+  D  AR  G+ 
Sbjct: 334 QAARS-GTNLCLLFIDLDRFKIVNDTLGHAAGDVLLVEIANRLRSCLRASDTAARYGGDE 392

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  +L    +    A  A  +  ++  P+ + E ++TV ASIG A   +    + ++L++
Sbjct: 393 FVALLHD-TDVRGAAIVAARIIDAVRQPLRVGEMDVTVDASIGIACSVAGGTAADDLLRS 451

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++AMY AK  G      +  S   +  +++ ++ +L  A+   E  + Y PI+ L   +
Sbjct: 452 ADVAMYRAKRAGRGRYAIYEPSMHAALLEQLHLETELRGALHRGEFVVHYQPIVELATGD 511

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G EAL++W+HP+ G ++++EF+ IAE+   +  I  ++L        +W+ +    P 
Sbjct: 512 ILGAEALLRWNHPRRGLLTAAEFVPIAEDCGEMVEIGSWVLRTACAQARAWQRELGEAPF 571

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N+++  L  +     ++ ++  T  + + + L  +E++V+         L  L+ +
Sbjct: 572 TISVNVSTAQLAGDTFAGYLKEVLENTGLAATSLVLDITEALVLREEPWLLARLEELKLL 631

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTI 913
           G+SL +DDFG + S L+ L  +P D VK + + +    T +  A  R I+ +A  ++  +
Sbjct: 632 GVSLAVDDFGARYSSLAGLPRLPLDMVKIDQAFIDAVGTPEGSAFARKIVELAHTLDLQV 691

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           IA+ +  +   +EL R  C++ Q    A P+  + +  L
Sbjct: 692 IAEGVQTQQQFEELRRARCEFAQGYLFAEPVDTDRVPAL 730


>gi|67922941|ref|ZP_00516437.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67855224|gb|EAM50487.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 613

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 202/421 (47%), Gaps = 4/421 (0%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNR  F + ++  +       N    V +IDI  +KKIND  G  +GD  L ++
Sbjct: 184 DPVTELPNRILFNEYVSIAVTNGKRHKNC-LAVFLIDIKDFKKINDAFGYTIGDYFLQAI 242

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           T+R+   ++  DI++R  G+ F I+L     +  +      + K +  P  +     ++ 
Sbjct: 243 TQRLKNCVRTGDIISRWGGDEFAILLPHIKKADNLYKITQRIIKELKYPFTVENNTQSLV 302

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
           + +G A +  +     ++L  AE  + + K  G  +     +S   +    I++ L  A+
Sbjct: 303 SHLGMAIYPQNGQVPQDLLNYAETQLSYHKKTGNFNFIKENLSKVNASLSQIEKRLYEAL 362

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              EL L Y P +    +    +EA I+W HPK+G +   +F+   ++  +I  ++ ++L
Sbjct: 363 RKEELCLYYQPQLNAHTKTTEAMEAFIRWQHPKYGLVPPKQFLPWVDKTELIVPLSRWIL 422

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           ER      +W+   ++ PI + +N++       +L + +  ++  T   P  ++L  +E+
Sbjct: 423 ERACTQNKAWQ-TNHLQPILVSVNLSMAQFYHPQLVDIIDEILGTTGLEPQWLELEITEA 481

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--E 893
           V++ + + +  +L  L+ + + + LDDFG   + +S+L  +PFDT+K + SL+       
Sbjct: 482 VILKDIKLTYQVLRELKSLDVRVCLDDFGIGYAAVSHLHRLPFDTIKIDVSLIKEMDDKP 541

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   ++ ++I + ++ +  ++A+ +     +  L  + C  +Q  + + PL      + L
Sbjct: 542 ENTTLVSALISLGESFDMRVVAEGVETRQQLNTLGDLQCQTMQGYYFSKPLSVEETTQFL 601

Query: 954 K 954
            
Sbjct: 602 T 602


>gi|66043345|ref|YP_233186.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63254052|gb|AAY35148.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 554

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 213/442 (48%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 110 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGSVALGHLDLDNFRR 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +  S+
Sbjct: 284 INRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSK 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLTR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + + +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 463 PIALLKIDMTFVGQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQ 522

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 523 VQGYLISRPLPVEELVTYLRSE 544


>gi|302558218|ref|ZP_07310560.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302475836|gb|EFL38929.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 622

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/593 (21%), Positives = 244/593 (41%), Gaps = 29/593 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +L     +Q            V GS D++            +P  A + G  +  + G 
Sbjct: 1   MLLDNITLTQERAQKENHFRSLVQGSSDVIMIAAPSGILRYVSPAAAGVYGRPAEELVGT 60

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  IH  D       +  F+          + E R R+ D    W+ +      + 
Sbjct: 61  --ELAGLIHPEDLGRVVHEVRRFLAASPVEEPTTRIECRFRSGDGG-GWLNVESTVNRHH 117

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G I      + D+TE+ +    +  NA  D LT +PNR  F  R+   L      D   
Sbjct: 118 GGLIFN----SRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGA 173

Query: 566 P----TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 V+ ID+D +K +ND +G   GD++LV   RR+ + ++  D  +RL G+ F  ++
Sbjct: 174 ALRGTAVLFIDLDGFKGVNDTIGHQAGDELLVQAARRLQDAVRKGDTASRLGGDEFAALI 233

Query: 622 ISE------NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             +           I + A  +R +++ P  +   ++ V ASIG A +    + + E+L+
Sbjct: 234 TGDGVRDRDARERHILELANRLRATLSQPYLIDGNDVRVNASIGVA-FAEPGLGAGELLR 292

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+LAMY AK  G   VE ++    +       +   L  A+ + E  L++ P++ L D 
Sbjct: 293 NADLAMYRAKAAGKGRVELYKPQMQQDVVRRAELATRLRAALHHGEFALLHQPVVCLADG 352

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I  + A  +W   +    +  EF+ +AE       +  ++LE                P
Sbjct: 353 RITSVCAQARWRSSQGVLFTPEEFLRVAEGGEKTAELGRWVLEEAVEQAAERHATG--LP 410

Query: 794 IFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           + + + +++  LLD  L    ++AL+++       + +  +++    + +     L  L+
Sbjct: 411 VPVAVRLSAHRLLDRSLPLGSVEALLTRHGLPSGSLVVELADTDPRVSLDELERRLAVLK 470

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIE 910
           ++G+ + LD FG+  + ++ L  +P D +K + SL+ G  E      I   ++ +A ++ 
Sbjct: 471 RLGVRIALDGFGSGPAAITALRRLPVDVLKLDRSLVDGVVESARLHKITSGLLRIASDLG 530

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKN 962
              +A  +     +  L  MGC + Q    +  L    + + L    +P+  +
Sbjct: 531 MQSVAGGVDLPEQVAVLRAMGCTHGQGKAFSGALDEYRLRRALAAGHYPVPSS 583


>gi|320332786|ref|YP_004169497.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
 gi|319754075|gb|ADV65832.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
          Length = 615

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 201/441 (45%), Gaps = 7/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E + +   I   AF D LTG+PNR    + L      +         VM++D+D++K 
Sbjct: 160 ILELEDARAHIRTLAFHDPLTGLPNRALLTEHLARAHAHAERHGEA-FAVMLLDLDRFKL 218

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD +L  +  R+   ++  DI+AR +G+ F ++L   +++      A  + 
Sbjct: 219 VNDTLGHGVGDQLLRGVAGRLRHAVRAEDIVARFAGDEFVLLLPDLHDAAHAERLAQTLM 278

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++A P  L E  +    S G + +     T+  +L+ A++AMY AK  G     ++   
Sbjct: 279 DALATPFTLDEHVLHAHFSAGISFYPEDGATAEALLRAADIAMYEAKLAGRGRCRTYNED 338

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R       + L   + ++  +L Y P++ L   ++VG+EA ++W       ++   F+
Sbjct: 339 MRRQAHAR--QQLKARLGHAHFHLHYQPLVHLGTTQVVGVEAFLRWPQADGSWLAPQAFL 396

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE  +I  I  ++L      + +WR      P +++ +N++ +     +L   +QAL
Sbjct: 397 PVAEENDVINRIGRWVLREACAQLQAWRATGRVEPDVYVSVNLSERQWQHPDLPAQVQAL 456

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T   P  + L   E  ++   + +     +L + G+ + LD FG+  S L+ +  +P
Sbjct: 457 LHDTGLPPHCLVLELPEGALVSAADAALRTAQQLVRAGVRVALDGFGSGLSNLTQVQALP 516

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F  +K + + +           +  +II +   +   ++AK +  +  ++ L  +GCD  
Sbjct: 517 FGQLKMDRAFVAPLDGAPHAGTLAEAIIALGHGLHVPVVAKGVETKAQVQALRALGCDLG 576

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q     +P         L+ R
Sbjct: 577 QGFWFGAPQPA-QACTFLRPR 596


>gi|182435794|ref|YP_001823513.1| putative integral membrane phosphodiesterase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464310|dbj|BAG18830.1| putative integral membrane phosphodiesterase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 940

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/784 (18%), Positives = 315/784 (40%), Gaps = 42/784 (5%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           +I G    LA  L + +  + + +   + A A + L Y  +D   +S ++ L      + 
Sbjct: 151 LIGGSLLTLAWSLALAHTAHLAGVQDTSVAPAALSLAYPLLDIVLVSMVLALHFRRAGVN 210

Query: 254 RACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           R+    A+++  +  L   +  +   R     G +  +G    ++L   + +     A  
Sbjct: 211 RSAVNTAIAALALTVLSDAVFTSPLLRSTYHSGQLLDAGWFAGSLLLAYAPWGARRAARP 270

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
           +        +                   L P           L+  +  R  + ++   
Sbjct: 271 SPRPGPPRAIASRPIAGSLAA--------LTPYLAAAVCTLGILYNVVDGRRVDRVVI-- 320

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
             G  V++ +++   ++  +L     +Q +          V GS D++            
Sbjct: 321 FTGCTVVLALVVRQGIM--LLDNISLTQELAQKENHFRSLVQGSSDVIMIAAPNGTLRYV 378

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRA 487
           +P  A + G  +  + G   +    IH +D   F   +  F+    +     + E R R+
Sbjct: 379 SPAAAGVYGREAEGLVGSELS--SIIHPDDLGRFVHEVRRFLAAPPHEEPTTRIECRFRS 436

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +  +   +             +  + D+TE+ +    +  NA  D LT +PNR  F
Sbjct: 437 GTGDWLNVESTVNRHQG------GLLLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALF 490

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R+   L       +    V+ ID+D +K +ND +G   GD++L+   RR+ + ++  D
Sbjct: 491 TARVRQALG-GRRSGDPGTAVLFIDLDGFKAVNDTIGHQAGDELLIQAGRRLQDSVRAGD 549

Query: 608 ILARLSGNRFGIILISENNSLK------IADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             ARL G+ F  +++ +    +      + + A  +R +++ P  +   E+ V ASIG A
Sbjct: 550 TAARLGGDEFAALIVGDGTRDQGAREYQVHEIADRLRLTLSQPYRIGPSEVRVAASIGVA 609

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +    I+ +++++NA+LAMY AK  G + VE +             +   L  A+   E
Sbjct: 610 -FAEPAISPTDLMRNADLAMYRAKAGGKDRVELYAPQMQADVVRRSELATRLRTALREGE 668

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L++ P++ L    +  + A  +W   +    + +EF+ ++ +      +  ++LE   
Sbjct: 669 FALLHQPVVHLASGSVAAVAAQARWRSAQGILFTPAEFLRVSGDDDRTAELGRWLLEEAV 728

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                     +  P+ + + +++  LL+       ++AL+++       + +  ++S   
Sbjct: 729 AQAADRARAGH--PVAVSVRLSAARLLEAASPPGSIEALLTRHGLPSGALMIEVADSDPR 786

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            + +     L  LR++G+ + LD FG+  + ++ L  +P D +K + +L+ G  E     
Sbjct: 787 VSFDALEQRLVALRRLGVRIALDGFGSGFAAINALRRLPIDVLKLDRNLVEGVVESARLH 846

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
            I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    + + L++ 
Sbjct: 847 KITSGLLRIACDLGLQSVADGVDVPEQVLALRAMGCTHGQGMAFSGPLDEYRLRRALVRG 906

Query: 956 RFPL 959
            FP+
Sbjct: 907 EFPV 910


>gi|114563054|ref|YP_750567.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114334347|gb|ABI71729.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 734

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/578 (21%), Positives = 238/578 (41%), Gaps = 30/578 (5%)

Query: 391 LATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMH 446
           LA    ++  +   E+  L   A   S  +V   +     +         + GL   ++ 
Sbjct: 170 LALTLATRYTYDSNEQIYLLRNATEQSEHVVMLVNTDSRIIEYVNSAHEKMTGLPRTTVE 229

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSN 504
               + L         N   +LD  +   R    ++ + ++   D   +W+   I P   
Sbjct: 230 HHSASSLDIF-----RNTPQLLDHIISKLRNSEIVKGDLKLARIDGSEYWLNYHITPFVT 284

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G     +    D + +      +   A+  +LTG+ NR  F  +L             
Sbjct: 285 EQGKHYALVSSY-DNSAEYLHKAELERLAWHCSLTGLHNRSHFTPQLDRA---------T 334

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI--LARLSGNRFGIILI 622
              +++ID+  +K+ ND  G A GD +L+   RR+       +   +AR+  + F I+L 
Sbjct: 335 DGILILIDLLGFKRFNDTNGHAQGDSLLIETARRLKHFAVSTNAIDVARIGSDEFAILLP 394

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  I      +  ++A P  +   ++    +I       S +     L  A++ + 
Sbjct: 395 PMLPETDIEQMIGRLYMNLAAPSVISREKVEPKPAIAVVDI-KSVVGMFAPLSCADITLQ 453

Query: 683 HAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +AK + G H + F  +     +    I+ DL  A+   E  L Y P++ L + + +G EA
Sbjct: 454 YAKKKNGTHYQFFNEALLETFTINAEIERDLHHAIRGREFELYYQPLMDLQNNKYIGAEA 513

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W+HPK G +    F+ IAE+  MI  I  ++LE   + +  W+ +     I + +N+
Sbjct: 514 LIRWNHPKKGVLYPGAFIEIAEQTGMINQIGEWVLETACKQLNLWQHK--NVNIAMHVNV 571

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           A++      L E +  LI++    P  + L  +E+ +MG+   +  L   L ++G+ L +
Sbjct: 572 AARQFFSGNLYEQVWRLITRYHIKPKTLILEITETELMGDIRYAINLCHELAELGVGLAI 631

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S + YL   P   +K + S +     + +   I+ +II MAK +  ++ A+ +
Sbjct: 632 DDFGTGYSSMKYLKQFPISKLKIDRSFIMDISSSHESREIVSAIIAMAKALNISLTAEGV 691

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +   + LT   C + Q    +  +  N     +   
Sbjct: 692 ETKEQEEFLTLSACHHAQGFLYSPAIRVNDFALFINAH 729


>gi|332533660|ref|ZP_08409520.1| response regulator/GGDEF domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036941|gb|EGI73401.1| response regulator/GGDEF domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 574

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 197/432 (45%), Gaps = 7/432 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
              S   +   A +D LTG+ NR  F + L  ++  +    N    ++ +D+D +K IND
Sbjct: 131 MHNSYLAVKHMAERDQLTGLSNRYHFEEILKVMIANNKRAKNC-VALLALDLDNFKNIND 189

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG +VGD++L+    RI   L+  +  ARL G+ F +I+    N  +I   A  +   +
Sbjct: 190 TLGHSVGDEILIQTVERIHSCLRQNEGFARLGGDEFAVIIGGICNINQIGMIANRILAEV 249

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P     R +  + SIG A + +    S E+LK A++AMY +K  G + +  ++     
Sbjct: 250 SKPFLHEGRTLNCSVSIGSALYPNDATESHELLKCADIAMYRSKQSGKSRISFYKEQYQY 309

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I+  +   +E     L Y P+     + + G+EALI+W           EF+ 
Sbjct: 310 EFSRRVDIQNSIKEHIEEKNFRLFYQPVYCSKTQMMTGVEALIRWPDTTVNYTP-DEFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  +++      +  W+      P+ + INI+   L    L   +   + 
Sbjct: 369 IAEECRLIDPLGKWIIASALEQLSLWQQSY-ETPLTLSINISPIQLQKKILETYLLETVK 427

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 S I L  +E+  M N +    +L  L   G  + LDDFG   S +S+L   P D
Sbjct: 428 TYNLKTSSIILEITETAFMENSKEVIEILTSLSNKGFRIALDDFGMGYSSISHLISYPID 487

Query: 880 TVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S+  + G   KR+ I+ S+  M K ++ +++A+ I  +   +   ++  DY+Q 
Sbjct: 488 IVKLDKSMQSLDGENNKRLKIIESLSLMLKKLDFSVVAEGIETKAQHQLCKKLNIDYLQG 547

Query: 938 SHVASPLGFNSI 949
              + P+  N I
Sbjct: 548 FLFSKPMPANEI 559


>gi|254392676|ref|ZP_05007851.1| integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
 gi|197706338|gb|EDY52150.1| integral membrane phosphodiesterase [Streptomyces clavuligerus ATCC
           27064]
          Length = 903

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/761 (19%), Positives = 300/761 (39%), Gaps = 43/761 (5%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
           +   L        + + + +   + A A + L Y  +D   +S ++ L        R+  
Sbjct: 129 IGGSLLTLSWSLALAHTTRVQGESVAPAALSLAYPLLDIVLVSMVLALHFRRSAANRSAV 188

Query: 258 EIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
             A+ +  +  L   L  +   R   + G +  +G    ++L   + +    +A +A   
Sbjct: 189 NTAIGALALTVLCDALFTSPLLRESYRSGQLLDAGWFAGSLLLAYAPWGARRSAELAGPV 248

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
             +         +            L P           L+  +  R  + ++   L G 
Sbjct: 249 RGARPTRPVGGSLAA----------LTPYLAAAVCTLGILYNVVQGRAVDRVVV--LTGC 296

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            V++ +++   ++  +L     +Q +          V GS D++            +P  
Sbjct: 297 GVVLALVVRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPGGTLRYVSPAA 354

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQ 491
           + + G  +  M G   +    IH +D       +  F+          + E R R+    
Sbjct: 355 SGVYGRDAEDMIGTPLS--SLIHPDDLGRVLHEVRRFLASSSSSEPTARVECRFRSGRGD 412

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           +  +   +             I  + D+TE+ +    +  +A  D LT +PNR  F +R+
Sbjct: 413 WLNVESTVNRHQG------GLIFNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTERV 466

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L       +    V+ ID+D +K +ND LG   GD++L+   +R+G+ ++  D  AR
Sbjct: 467 GQAL-TGRRAGDPGTAVLFIDLDGFKGVNDRLGHQAGDELLIQAAQRLGDSVRSGDTAAR 525

Query: 612 LSGNRFGIILISE------NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
           L G+ F  +++ +      +   ++ + A  +R +++ P  +  +++ V ASIG A +  
Sbjct: 526 LGGDEFAALILGDGIRDQASRESQVVEIAERLRLTLSQPYRIDGQDVRVAASIGVA-FAE 584

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723
             I  S +++NA+LAMY AK  G + VE +             +   L  A+   E  L+
Sbjct: 585 KGIAPSVLMRNADLAMYRAKAGGKDRVELYAPQMQAEVVRRTELAARLRSALHEGEFALL 644

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P++ L    I  + A  +W   +    + +EF+ ++ +      +  ++LE       
Sbjct: 645 HQPVVSLTTGRIEAITAQARWRSAQGILFTPAEFLRVSGDTDRTAELGRWLLEEAVEQAA 704

Query: 784 SWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                 +  P  + + I ++ LLD  +    ++AL+++   +   + +  SE       +
Sbjct: 705 ERDRLGHRVP--VSVRIPARRLLDRSMPLTTVEALLNRYGLASGALIVELSEYDPRIPFD 762

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILR 900
                L  LR++G+ + LD FG+  +  + L  +P D +K +  L+ G  E      I  
Sbjct: 763 ELEQRLVGLRRLGVRVALDGFGSGHAAFTALRRLPVDMLKLDRELVEGIVESARLHKITS 822

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            ++ +A ++    +A  +     I  L  MGC + Q    A
Sbjct: 823 GLLRIACDLGLQSVADGVDAPEQIIALRAMGCTHGQGMAFA 863


>gi|325282995|ref|YP_004255536.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324314804|gb|ADY25919.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 870

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 110/503 (21%), Positives = 227/503 (45%), Gaps = 19/503 (3%)

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-----NGDILRYIGIANDITEQ 522
           L+  +   R +   E  + + D Q     + ++            +  R + +A      
Sbjct: 354 LEQALKRLREQRALELELHSRDMQLRTEALSLQVRLEEVQHRAEKEQQRSMELAEANLAL 413

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++       A  D LTG+ NR    +RL  +L   +  D+ +  +++I++D ++ +ND 
Sbjct: 414 RQTEAEWRYRATHDLLTGLMNRSWLHERLAQLLT--SRRDDEQLGLILINLDDFRMVNDR 471

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD VL+   +R+       D++ R+SG+ F ++    + +  +   A  + + + 
Sbjct: 472 YGHFSGDQVLMVAAQRLLMSASDHDLVGRVSGDEFVVLARHLSGAADLEARASQLLQVLR 531

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSF 700
            P  +   +I   AS+           + ++++NA LAM   K          +  +S+ 
Sbjct: 532 APYVVGPYQIEQGASLVTLLAPWDGEQAGQLMQNANLAMTQVKRGPGNRVLRYTPALSTA 591

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R  ++ +L  AVE S L L Y P  +L   ++ G EAL++W++P+ G +S + F+ I
Sbjct: 592 EAERRRLERELREAVEGSGLSLHYQPQFQLPSRQLTGYEALVRWNNPRLGPVSPASFIPI 651

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L    R   +W+       + + +N++ +     +  E +   +  
Sbjct: 652 AEETGVIVELGYWVLREACRQAAAWKFAGR--CLSMAVNVSVRQFEQPDFVERVVQALHG 709

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S++ L  +ES+V+ + + +   +  LR  GI + +DDFGT  S LS L  +PF+ 
Sbjct: 710 VGLPGSQLVLELTESLVLHDKDLANRHIMALRAHGIRIAIDDFGTGYSSLSLLRQLPFEQ 769

Query: 881 VKFNGSLMTGSTEKRIAI--------LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           +K + S +     +  AI        +  +  +A+ +   + A+ +  E  ++ L+ +GC
Sbjct: 770 LKIDRSFIQDFAGETQAISFQEARVVMEGVTAIARGLGLHVTAEGVETEEQLQLLSDLGC 829

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D +Q   +  P+        L E
Sbjct: 830 DKVQGFLLGRPVPAAEAEVWLPE 852


>gi|218530520|ref|YP_002421336.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218522823|gb|ACK83408.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 649

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 203/433 (46%), Gaps = 9/433 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  E     A  D+LTG+PNR+ F  RL  ++  ++   N    + + D+D++K IN
Sbjct: 209 EAQRLGEENQRLAHTDSLTGLPNRRYFFQRLDALIA-ASATGNAAFALAIFDLDRFKPIN 267

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL    RR+         +ARL G+ FG+++   + +    +    +  +
Sbjct: 268 DTFGHTAGDRVLEETGRRLSAFAADGVTIARLGGDEFGVLIHGADRTADAVELCNRICTA 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI+L E  +    S G A + S+   +  +   A+ A+YH+K R       F     
Sbjct: 328 LQAPISLGETHVVPGCSGGLALYPSAGRAADALFDRADYALYHSKERKRGTTTLFSQEHE 387

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + R    ++  L  A   +E+ + Y PI+  + + I  +EAL +W  PK G +    F+
Sbjct: 388 DAIRAERAVEAALQSADLAAEMEMHYQPILDTVTDRITTVEALARWTSPKLGRVPPDRFI 447

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   MI ++ L +L +   D     D        +  N++S DL   E    + A +
Sbjct: 448 AVAERCGMIHSVTLLLLRKALADAARLPDDVG-----LSFNLSSHDLASPETVIAILAAV 502

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P RI L  +E+ +M + E ++  +  LR +GI + LDDFGT  S L+Y+  +P 
Sbjct: 503 RQSGLDPRRITLELTETALMRDFEGAQKAITLLRALGIKIALDDFGTGYSSLNYVHRLPL 562

Query: 879 DTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +   M         +++ +I+ + +N+    IA+ I     +  + R GC Y+Q 
Sbjct: 563 DRIKIDRGFMADVESDLGRSVVITILDLCQNLGLDGIAEGIETTEQLSAVRRHGCRYVQG 622

Query: 938 SHVASPLGFNSIL 950
             +  P+    +L
Sbjct: 623 YLIGVPMPMTDLL 635


>gi|312963549|ref|ZP_07778031.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311282355|gb|EFQ60954.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 701

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 250/574 (43%), Gaps = 17/574 (2%)

Query: 392 ATGYFSQGIFSDGERQS----LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
                 Q +  D E         +  + + +             P I+ +L      + G
Sbjct: 134 RNRRALQRLSHDLESARAFNASVLDNAAEGILVVGEEGVIEYANPAISRLLNATLHELKG 193

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSN 506
               +L ++       +          +    + ++  +R +  Q   + +   P+    
Sbjct: 194 Q--EFLSFLQKPHVPAWLESQMYAGYRKGETWRLHDAILRTSRGQQVPVALSCAPLPTEQ 251

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +    D++E +   + +   A  D LTG+ NR+ F   +   L  S   D    
Sbjct: 252 ---KAMVVTVLDMSEVRHLHQQLEFQAVTDPLTGLLNRRGFYQAVENTLSRSERVDQ-SL 307

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K++ND LG   GD VL  ++ ++   L+  DI+ R+ G+ F  +L     
Sbjct: 308 VLLYLDLDGFKRVNDSLGHDAGDRVLRWVSEQLQGCLRSYDIIGRMGGDEFTALLE-LEF 366

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               A  +  + + +++   +   ++ +  SIG A++       + +L+ A++AMY AK 
Sbjct: 367 PEHAAKISEKLIERVSVCHQVDGLDVMLGVSIGIATFPDCGSDLNGLLRAADIAMYEAKR 426

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      +          R+M+++ +  A+EN +  LVY P + L D  + G+EAL++W
Sbjct: 427 AGRQQYRYYDQEMNGRARSRLMLEDSVRTAIENKDFTLVYQPQVSLEDGHLRGVEALLRW 486

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G++    F+ + EE+ +I  ++ ++ +++A    +W    +   + + +++++  
Sbjct: 487 QHPSVGDVPPGLFLPLLEEVRLISQLSSWIYQQVAAQRQAWHTTFDDE-LVLSVSLSASQ 545

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L   +Q +I +      ++++   E  +M N E +   L  LR++G+ + LDDFG
Sbjct: 546 FNLPNLANQLQQMIERYGLRDRQLEVEIGEDCLMNNLEEAAKQLKLLRRVGVRIALDDFG 605

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +    L++L  + FDT+K +  L+     + +  A+ RSII +  + +  +IA+ +  + 
Sbjct: 606 SGQCSLAHLRDLAFDTLKLDPQLVARLPGSVRDAAMARSIIELCAHFDVLVIAEGVETQE 665

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               L   GC +IQ    + PL    +    + R
Sbjct: 666 QASWLKAHGCPFIQGPWASQPLMAEVVADWSRAR 699


>gi|319427769|gb|ADV55843.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella putrefaciens 200]
          Length = 573

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 209/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +   +N    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNNY-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+ E+L+  D++ARL G+ F +++  ++        A  + K+
Sbjct: 187 DTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVANRLLKA 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A+  +E  + Y   +  +  ++VG+EALI+W H K G I+  +F+
Sbjct: 307 REVRYRNHIESSLRVALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ +++ I  ++L    R    W  Q         I +N+++  +   +L   +  
Sbjct: 367 PIAEEMGLMEEIGDWVLTEACRQAQIWLTQLKPIGRDFTIAVNLSASQIAQIDLLSKIIQ 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  T   P+ ++L  +E+ ++ +P     +L ++ K+G+   LDDFGT  S L ++   
Sbjct: 427 TLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ +      +  T   C+ 
Sbjct: 487 PISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCTARNCNI 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL       
Sbjct: 547 LQGYLFSRPLEAMDFEA 563


>gi|109896391|ref|YP_659646.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109698672|gb|ABG38592.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 815

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 211/437 (48%), Gaps = 6/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LTG+PNR      L   +   A +      V+++D D ++KIND  
Sbjct: 368 QNTRELENIAMYDRLTGLPNRNMLNFVLRKKIASLARNPE-PLVVILLDFDNFRKINDSY 426

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD+ L+ + +R+   L+  D+++R  G+ F I+L   +        A  +      
Sbjct: 427 GHGIGDEFLIIVAQRLRSNLRESDVISRFGGDEFVIVLQEVDEVSNAMTLAEKLVTKFRE 486

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           PI +  +    + S+G  S     +T  ++++ A++AMY +K  GG+    F   +S+  
Sbjct: 487 PIEIGAQRFYTSVSLGITSCDEQHLTVDDLVRQADIAMYASKDAGGDRFTLFNEGMSTRV 546

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + I+ D+  A++  +        I +   ++VG EALI+W HPK G I   EF+ I 
Sbjct: 547 MRHIEIEHDIRDALQQEQFKFALQAQIDIGTGKLVGFEALIRWLHPKNGYIMPDEFIPIM 606

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    +  +  + ++R    +    +   +  + + +N+++   LD  L   M+  ++K+
Sbjct: 607 ENSESMITLGYWGIKRAFAILA-HLESMGLSGLRVAVNLSASQFLDPNLINFMREQLAKS 665

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                +I+L  +E  V+ +   +  ++ +L+++G S ++DDFGT  S L+YL  +P D +
Sbjct: 666 EQGAEQIELELTERTVVADISHTLRIMYQLKELGFSFSIDDFGTGYSSLAYLSQLPVDII 725

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++G         I++S I M + +   ++A+ +     +  L  M CD  Q  +
Sbjct: 726 KIDRSFISGMSVNSADKQIVKSTIAMVRKLGMKVVAEGVETAEQLNTLGDMHCDIAQGYY 785

Query: 940 VASPLGFNSILKLLKER 956
           ++ PL  + + + L  +
Sbjct: 786 ISKPLLEDDLYQKLPSK 802


>gi|152968402|ref|YP_001364186.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362919|gb|ABS05922.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 915

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 137/698 (19%), Positives = 278/698 (39%), Gaps = 27/698 (3%)

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYY--PMVTASIARITLASIVLYYTYFIIYHGMKGY 334
           R  A+   +    I     L         P   + +       +            ++  
Sbjct: 209 RRTARATTLAGEEIPYYLGLVAAPAGGEGPARQSFLGSWAGFRLASGDVLTASGAAVRSG 268

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
             A L  P    +              + +  +  +L   +V     +   +     A  
Sbjct: 269 WTAALAHPDSRTVDQTLADAVATPAGGVPDSAVLLSLSTAVVGRDDALRAVLDAAAGAAV 328

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             ++   +  +R+ L       ++    +    + T+  IA  L   + +        L 
Sbjct: 329 EAAETYRAQAQRELLNYSAVTAVLLALSV-GGTLYTSRSIAGPLARLAAAARSISLGELV 387

Query: 455 YIH----INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +H       R   R +  + V  R  + Q +     AD      I+R RP+    G ++
Sbjct: 388 EVHVEGPPEARTVARGLGAAVVSLRSVQAQAQ---AVADGDLDDEILR-RPVGGPLGRVV 443

Query: 511 R--YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
                 I   + E+++  E +   A  D LT +PNR   L +    L  +    + R  +
Sbjct: 444 HASVRQIIGAMHERERLQEDLAHQATHDALTTLPNRAEALAQTDRALRRTRRTGD-RVGL 502

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D+D++K +ND LG   GD VL ++  R+ E ++  D++ARL G+ F +++    +  
Sbjct: 503 LFVDLDQFKTVNDSLGHGAGDAVLRTVAERLRERVRAVDVVARLGGDEFLVVVEPVQDEK 562

Query: 629 KIADFAIAMRKSIAMPINLLE---REITVTASIGFASW------TSSKITSSEMLKNAEL 679
            + D   A+  +++ PI L        +V AS+G A            + +  +L+ A  
Sbjct: 563 GLLDLGQALIDAVSAPIALAGSTETTASVGASVGVAVSRHDPGSPDGSVDADRLLQEAHT 622

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A Y AK  G   VE +      +      ++E L  A+   EL L Y P+  L    +  
Sbjct: 623 AAYRAKAAGRGRVEVYDDELRHALAAQAAVEEGLRHALVADELVLHYQPVTDLDTGRVRS 682

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFI 796
           +EAL++W+ P  G +    F+ +AE   +I  +  + L      + ++         + +
Sbjct: 683 VEALVRWEKPGEGLVPPGRFIPVAESSDLICDLGRWALRTSLAQLRAFDAAGGDCAGLRV 742

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ + L    L + ++  ++ T  SP R+ L  +E+V++ +   +   LG LR IG+
Sbjct: 743 AVNVSGRHLRSPRLVDDVRDALAATGTSPERLTLEITETVMVEDRA-AWSRLGELRAIGV 801

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAK 916
            + +DDFGT  +    L  +P D +K + S +     + + ++R ++  A++    ++A+
Sbjct: 802 RIAIDDFGTGYTSFGQLARVPVDVLKIDKSFVDSDDPRTVELVRLVVGAARSFGLGVVAE 861

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +     +  L   GCD +Q  + + P+    +   ++
Sbjct: 862 GVEQAEQVHALRATGCDTVQGFYFSRPVPAARLEDAVR 899


>gi|254492281|ref|ZP_05105455.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224462606|gb|EEF78881.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 727

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 125/703 (17%), Positives = 278/703 (39%), Gaps = 33/703 (4%)

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           F    L WN        +  +GI  + +   + + +    +S     L    L     +I
Sbjct: 4   FARNSLQWNAAIKTFISVLLAGIMTLVVSSYLLYTHLDPDSSEFFEILTYYALAGVVLLI 63

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITK------------------RLDNDIIQP 369
           +  +  +  +     A  L     I   + +                    RL       
Sbjct: 64  FAAL--FAMSHYQALARPLENFERITHALPLLSAKKYNEARQIFETVQGDKRLKEVGELQ 121

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           A    L  ++  +   V Q        +  +  + +     +  +  I+   D       
Sbjct: 122 AASIQLSNVLEQLDGNVNQRTKMLHTTNTELRGERDFVKNLLDTAQLIILTIDEEFKVTM 181

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                  I G +   +   + +   +    +     T             Q E  +   +
Sbjct: 182 FNDYGEKITGFSEKEVL--LSDAARFFPAGNWIEAETFFRELFAGNIQIAQQESELIDRE 239

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
            +   +      + N+    +    +  D+T++K++ + I+  A  D LT + NR+ F++
Sbjct: 240 GRIRQISWLHSRLENNAQHPVLM-SVGLDMTDKKEAEKRIVWMAEHDPLTDLCNRRKFIE 298

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
                L  +    +    ++ +D+D++K IND  G + GD++L  + + +  + +F D++
Sbjct: 299 EFEKSLRTAIRYKHNN-ALLYLDLDQFKDINDTSGHSAGDELLKEVAKTLKRVTRFTDLV 357

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F +++   +    +        +   + +     +  +++SIG  ++     +
Sbjct: 358 ARLGGDEFAVLMPETDEVGAVVLTKKIQAELQKIQLEYGNVKHKISSSIGIVNYPVHDAS 417

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYH 725
             E++  ++LAMY AK  G N    F       +++      K  +  A+EN+   L Y 
Sbjct: 418 IHELMGFSDLAMYKAKSAGKNTYHIFSADDQTREQLETRVFWKHKIEDALENNLFVLHYQ 477

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNI-SSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           PI+ + +  I   E LI+   P  G I    +F+ IAE++ +I++I+ F++++  + +  
Sbjct: 478 PILNIENNVIQHYEVLIRMREPGSGQIRMPGKFIEIAEQVGLIQSIDHFVIQQGIKHLSR 537

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            + Q         IN++   +    L   ++ L+ K    PS +    +E+  + N +++
Sbjct: 538 LQKQGLKVKF--AINLSGSVVDAPVLLPFLKRLLKKYELDPSGLIFEVTETAAVSNLQQA 595

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSI 902
           +L++  ++ +G   +LDDFG   +  +Y+  +P D +K +G  +    +       ++++
Sbjct: 596 KLMMTAVKALGCQFSLDDFGVGFASFNYMRQLPIDIIKIDGIFIKDLDKNADDQLFVKAL 655

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           I +AK +    IA+ +  +  +  L + G DY Q  H+  P  
Sbjct: 656 IDVAKGLGKKTIAEFVENKDILTLLRQYGVDYAQGYHIGRPEP 698


>gi|88799467|ref|ZP_01115044.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Reinekea sp. MED297]
 gi|88777777|gb|EAR08975.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Reinekea sp. MED297]
          Length = 814

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 127/667 (19%), Positives = 249/667 (37%), Gaps = 24/667 (3%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           LF +S + P     +  + L    L          ++  ++A + +   +   +      
Sbjct: 162 LFTISLFLPDSR-QLILLDLGWQSLLPDSAFDAVALQFDDQAPIQLNGTVANSVLESSNP 220

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT--GYFSQGIFSDGERQSLAVLG 413
           +    ++     +      L L+ + +   V+              I    +        
Sbjct: 221 LTTHWQVRQMPTKAYWALVLPLVGLSLVAVVLIRFYQLHQRVEEHKIDQQEKLFDHLSDE 280

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
              ++   D     V              G +   ++  L     +            + 
Sbjct: 281 FNLLMLVTDTDGTVV-----------WKRGQLSADLKE-LRLREGDSLRQAWKHAPKALT 328

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           Y +  +  E R    +  +  + +   P  +  G I        DITEQ+   E I    
Sbjct: 329 YFQHTVSGETRSFEIEIDYFRLQVHQWPNLSPQGHITGLTLSIQDITEQRLLEEQIRHEQ 388

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNRQ F ++L   L      +     V+ +++    +IN V G A  D +L 
Sbjct: 389 HHDALTGLPNRQLFQEQLHHELHRCRRREE-NLAVVALEVSGIGQINSVHGDAFSDQLLR 447

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + + L+  D L R S + F +++        +   A  + K  +    + +  + 
Sbjct: 448 RIAGELTKALREEDSLCRYSNDEFLMVISDFQTPEALHALAKRLIKLASTRYQIDDHYVA 507

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
           + A++G A++ S       ++  A  AM HA+  G N ++ F         ++  ++  +
Sbjct: 508 LYANVGIATFPSDARDEGSLITCAITAMRHARQTGRNTLDYFSEESARRAQEKWHLERQM 567

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   +  L Y PI  L     +  EAL++W       ++  +F+ +AEE  +I  + 
Sbjct: 568 TEALAAHDFQLHYQPIFDLDSNRCIAAEALLRWPS---TQLAPDQFIPVAEETGLIHPMG 624

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L    R    W D+      ++ +NI+   L      +   +L  +    P R+ L 
Sbjct: 625 NWILSTAVRQWAQWHDEGRELT-YLSVNISVLQLQQPGFIDQAISLTKQYHLPPGRLVLE 683

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+++         + RLR+ G  L +DDFGT  S L+YL  +P D +K + S + G 
Sbjct: 684 ITESILLQTSPNVLSQINRLRQAGYRLAIDDFGTGFSSLNYLKQLPIDYLKVDRSFVEGI 743

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               +  AI R+I+ MA  ++  I+A+ +     +  L + G  + Q       L     
Sbjct: 744 IENNQDSAIYRAIVDMAMAMDIEIVAEGVETPQQMLWLKQQGVTFAQGYFYTQALPPEKF 803

Query: 950 LKLLKER 956
              L  +
Sbjct: 804 TLYLNAQ 810


>gi|330991632|ref|ZP_08315583.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
 gi|329761651|gb|EGG78144.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
          Length = 853

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 119/513 (23%), Positives = 233/513 (45%), Gaps = 17/513 (3%)

Query: 454 PYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-----HWMIIRIRPMSNSNG 507
             +  +  ++     L      +    ++   +   +         +     +P      
Sbjct: 340 EVVIPDFSQETRWAALRDVAAQQGLAAEWAVPIILRNGDVAGSFSLYFRTPGQPDRWHRR 399

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   + +A    EQ++S E I+  ++ D LT +PNR     R+  +   +     +  +
Sbjct: 400 IVNACVHLAMLAVEQQRSRESIIRLSYADRLTSLPNRAWLHRRMAEL---ATRPPVVPLS 456

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V++ID+D+++KI   LG    D +L+ L  R+   +   D+L R  G+ F ++  +E +S
Sbjct: 457 VLIIDLDRFRKIVQALGQGRADQLLLELADRLRHGIVGRDVLIRTEGDEFVVL--TEESS 514

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             I   A  +  ++  P ++    ++++ SIG ++         E L+ A  A+  AK  
Sbjct: 515 ADITLLAERIIHNLEEPFSVDGIPVSLSGSIGIST-PDDGQDMEERLRQAYTALAQAKKA 573

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F   ++    D V++   L  A+ ++ L LVY P + L    + G+EAL +W+
Sbjct: 574 GRCCYRFFHPSMNRQADDHVILASALREAIADNRLTLVYQPQVDLRTGALHGVEALSRWN 633

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P  G +S   F+ +AEE   I+ + ++ L      +  W  +    P  + +N+++   
Sbjct: 634 DPVLGMVSPGRFIPVAEETGQIRELGIWSLRVACEQMADWIARGIKVP-TVSVNLSAIQF 692

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D EL   + A++ +T   P R+ +  +E+ ++ N +++      +R +GI L++DDFGT
Sbjct: 693 QDPELVAQLGAILHQTGVPPERLIVELTETAMIENFDQTVATATAIRNLGIGLSMDDFGT 752

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS L  +P   VK + S M   GST     ++ +II +   +  T+IA+ +     
Sbjct: 753 GYSSLSNLAGLPISEVKIDRSFMNGFGSTGNVRQVVTAIIRIGHTLGMTVIAEGVEEAEQ 812

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +L  +GCD IQ  +   P+   ++   + ER
Sbjct: 813 CNQLRAIGCDVIQGYYFGRPMDTAALDTWISER 845



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 11/184 (5%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                   +    DG   +L +  +   +   D           +A++LG+   ++    
Sbjct: 123 TFQDRTEEEQAREDGAISALIMQATDRGILVLDPQYRITHANRAVASLLGMTVDALRHAP 182

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L     +D    R      +  R G  + +   R       W+   + P    +G +
Sbjct: 183 FGTLLSGAESDIGTLRQ-FRRQLSLRTG-FELDVHTRGPQGTDLWLRCAVTPHFGDDGAL 240

Query: 510 LRYIGIANDITEQKKSL--EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
              I I +DIT  ++    +  +  A  D         S  + L  +             
Sbjct: 241 ADIIVILHDITHDRQLRDLQRDVVEALTDQ-------FSLREMLDFMCRRIELIAPDCMA 293

Query: 568 VMVI 571
           V+++
Sbjct: 294 VVML 297


>gi|170738409|ref|YP_001767064.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168192683|gb|ACA14630.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 719

 Score =  423 bits (1087), Expect = e-115,   Method: Composition-based stats.
 Identities = 131/566 (23%), Positives = 241/566 (42%), Gaps = 28/566 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG--SMHGPIRNWLPYIHIN----DRDNF 464
           +  S + V  +D     V T      I        ++ G     L  + ++    D    
Sbjct: 156 LEQSEEAVSFYDEEEGIVFTNDAYHRIFPHYPDRRALRGAHHLDLYRLDLDAGIIDDPLA 215

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-- 522
           R   ++++  R  + +    +     +   +  R    + +       +    DITEQ  
Sbjct: 216 RADPETYLAERARKSRL---LTDRQREIQRVGGRTYIYTRTRSRTGATLSRRTDITEQAL 272

Query: 523 -----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
                ++    +   AFQD+LTG+ NR    +++  +    A        V++ID++ +K
Sbjct: 273 TEARLREREAELRTLAFQDSLTGLFNRAYLREKVEQLERALAEGRVAGLCVLMIDLNGFK 332

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G   GD VL  +  R+  +L    +L RL G+ F ++L       ++A  A A+
Sbjct: 333 AVNDTYGHDCGDRVLRIVGARLSGILPPEAVLMRLGGDEFLVLLEQAAEEPELAAMAEAI 392

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESF 695
             ++  PI   +  ++V ASIG A+    +     ++  A+LAMY AK     G      
Sbjct: 393 IAAVTEPIRDGDLALSVGASIGIAAVRGPQTEIDAIIGRADLAMYEAKSLRCSGYRFFHS 452

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +   R  ++ + ED+  A+   E  L Y P  R  D  + G EAL +W HP+ G I  S
Sbjct: 453 GLREQRLAQLALIEDVRGALRRGEFALHYQPQFRTQDGGLAGFEALARWTHPRHGPIPPS 512

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ I EE  +I+A+  ++L+    +  +W        + + +N++   +        + 
Sbjct: 513 TFIPIMEENGLIEALGTWILDTACAEARTWP-----TDLRLAVNVSPLQVRSGRFSLTLA 567

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++   P R++L  +ESV++ +  RSR  L R + +G  + LDDFG   S L YL  
Sbjct: 568 EALLRSGLPPHRLELEITESVLLADEARSRAELERWKALGARIALDDFGRGYSGLGYLTA 627

Query: 876 IPFDTVKFNGSLMTGST---EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            P D +K + + + G         A  IL +II + + +  T+  + +     +  L R 
Sbjct: 628 FPIDKIKIDRAFLAGFDAQRPDAAAGVILHAIIRLGRVLGKTVTVEGVESPDQLAHLRRE 687

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            C  +Q   +  P+    +   + +R
Sbjct: 688 RCTEVQGFLLGRPMPAAEVPGFIAQR 713


>gi|300864716|ref|ZP_07109570.1| Response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(S) (modular
            protein) [Oscillatoria sp. PCC 6506]
 gi|300337282|emb|CBN54718.1| Response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(S) (modular
            protein) [Oscillatoria sp. PCC 6506]
          Length = 1101

 Score =  423 bits (1087), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/620 (19%), Positives = 235/620 (37%), Gaps = 29/620 (4%)

Query: 366  IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
                A +  L+        +    +       Q +F + E   + +   GD     +   
Sbjct: 477  FWVSASLEALMFDGEAAILSAFCDISDRKQIEQALFQEKELAQVTLQSIGDGAIATNAQG 536

Query: 426  DRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFV-GYRRGRLQYEF 483
            +  +  P    + G  +    G   +     ++   R+     + +     R        
Sbjct: 537  EVQSLNPVAEILTGWQTEEAKGQPLSEVFQLVNETTREVVENPVTAVFRENRIVATATNM 596

Query: 484  RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             + A D +   +     P+  S+G I+  I +  ++T+ +     +   A  D LT + N
Sbjct: 597  VLIAKDGREFAIDHSAAPIYASSGQIMGAILVFRNVTQARNLSRQLTWQATHDRLTRLIN 656

Query: 544  RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
            R  F   L   +  S T +     +  +D+D++K IND  G A GD++L  +T  +   +
Sbjct: 657  RHEFERLLEEAVTSSKTLNQQHV-LCYLDLDRFKIINDTCGHAAGDELLRQVTGLLKSKV 715

Query: 604  KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
            +  DILARL G+ FG++L   + +  +        +          +  +++ SIG  + 
Sbjct: 716  RETDILARLGGDEFGLLLYKCSINRALQIADYLREQIQNFRFIWDGKTFSISVSIGLVAI 775

Query: 664  TSSKITSS------EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCL 713
             S+    +       +L  A+ A Y AK +G N +  ++       R          +  
Sbjct: 776  GSNDREIACHVGSANVLSAADAACYAAKSKGCNRLHLYKADDSDMARQFGETQWVGRINQ 835

Query: 714  AVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            A+E +   L    I        E V  E L++  +     ++   FM  AE   ++ AI+
Sbjct: 836  ALEENRFCLYSQTIAPLTSDWSEGVHYEILLRMLNEAGEIVAPGSFMPAAERYNLMPAID 895

Query: 772  LFMLERIARDIISWRDQANMPPIF-----------ILINIASKDLLDNELCEGMQALISK 820
             +++ ++   + +   +   P                IN++   + D+   E +Q   + 
Sbjct: 896  RWVIRKLFSSLANSGLRMGNPKFNGKAQIPLQKSLYAINLSGASINDDTFIEFLQNQFTF 955

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                P  I    +E+V + N  ++   +  L+K+G    LDDFG+     +YL  +P D 
Sbjct: 956  YRIPPQIICFEITETVAIANLSKAVQFIQELKKLGCCFALDDFGSGMCSFAYLKNLPVDY 1015

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K +G  +          A++ +I  +   +    IA+ +  E  ++ +  +G DY Q  
Sbjct: 1016 LKIDGYFVKDIANDPIADAMVEAINRIGHIMGIKTIAEFVSNETILQRIKEIGVDYAQGY 1075

Query: 939  HVASPLGFNSIL-KLLKERF 957
             +  P     IL  L+   F
Sbjct: 1076 FITKPQPLTEILSNLIASEF 1095



 Score = 44.9 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 19/207 (9%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI-----------IQPALVGGLVLIVIL 381
            Y    LLI   I   +    L   I  RL +             +   L       +  
Sbjct: 310 RYFTWSLLIGGAIFGLVGITVLEKLILSRLASLSAGVKSIGSSGNLSQHLKIPGSDELSS 369

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGL 440
           +  T+ + +    +    +     +       +   V          +      A   GL
Sbjct: 370 LATTINKMLTQLDFSQTALRESEAKFRAVSEATPIPVVITRASDGVPLYLNEYTALTFGL 429

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +     +   Y    D      +L++F+     R  YE R + AD    W+   + 
Sbjct: 430 DREELLHHKTSEFYY----DLAEREALLEAFMCQGYLR-NYEVRAKKADGTPFWVSASLE 484

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            +   +G+    +    DI+++K+  +
Sbjct: 485 ALMF-DGEAA-ILSAFCDISDRKQIEQ 509


>gi|260576800|ref|ZP_05844784.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sp. SW2]
 gi|259020943|gb|EEW24255.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sp. SW2]
          Length = 906

 Score =  423 bits (1087), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/622 (20%), Positives = 251/622 (40%), Gaps = 25/622 (4%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVI---LIGFTVIQHVLATGYFSQGIFSDGER 406
           +     + +  RL + +   +             +I   V   + A     + + ++ + 
Sbjct: 283 YLFSNELRMRHRLGHWVWVLSRGRVTRFSASGEPVIMSGVHGDISARKSLEKDLQNERDF 342

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW--LPYIHINDRDNF 464
                  S   +   D     +    +   ILGL +  M G   +         +     
Sbjct: 343 LLRLTETSISGILALDGDGVVLFVNKEAEAILGLTTDQMIGRTHDDPSWKITAPDGSPLG 402

Query: 465 RTILD--SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                    V           R+   D +   + + + P+ ++N   +R +    DIT Q
Sbjct: 403 EHDFPFVRAVEQGIAFRDIRLRIVRPDGRNRIISVNVAPILDTN-SPIRVVCSVTDITAQ 461

Query: 523 KKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +               A  D +TG+PNR+ F + L   + L+ ++  +   ++ +DID 
Sbjct: 462 AEFQHSLARAAEAAQYAALHDQMTGLPNRELFREYLEAAIRLANSN-TIELMLVFMDIDN 520

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+IND  G   GD +L+ L+ RI       D +AR+ G+ F   L    +    A+   
Sbjct: 521 FKQINDTYGHFNGDKLLLELSHRIASHQNTSDTMARIGGDEF-TFLHQLQSGESAAEVLD 579

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  P  +   ++ +T S G + +      + EML+NA+LAMY AK  G N    F
Sbjct: 580 PLVQELERPFLIDGGQVYLTVSFGVSIFRRDANDADEMLRNADLAMYQAKGNGRNQHVVF 639

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNI 752
             S          + + L  A+ +    LV  P         + G EAL++ + P   +I
Sbjct: 640 SSSLRAQMSQQAKVTQALQRALRDKTFSLVLQPKFSLNEPARVSGAEALLRCNDPLLQSI 699

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+ +AE+  ++++I+L +++ +     +W+ Q     + + IN++S+ L  +   +
Sbjct: 700 GPGEFIPVAEQAGLVRSIDLCVVDMLGGIKAAWKQQGID--LRVSINLSSESLRWSGFGD 757

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +     +    P  + +  +ES +M     S+  +G +   G  ++ DDFGT  S LSY
Sbjct: 758 ALVRRFHENRIGPDDVLIELTESALMDMSPTSKANMGSILAEGFDISADDFGTGYSSLSY 817

Query: 873 LGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L  I    +K + S +           +I+R+I+ MA+ +    +A+ +  E   + L  
Sbjct: 818 LHLIQLRELKIDRSFIARLGAGVGASDSIVRAILAMARALGLRTVAEGVETEAQREWLQD 877

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            GCD +Q     + +  ++   
Sbjct: 878 QGCDEVQGFLFGAGMSVDAFTA 899



 Score = 97.3 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 14/170 (8%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDN 463
           ++    +LG     W +D+    +      A +LG     +    +  W  ++H +D   
Sbjct: 210 QQLQEIILGGELGTWRFDLPAQVIHINERWAEMLGYTKEELDPVSVEQWRAFLHPDDLQR 269

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQ 522
             +  ++           E R+R     + W++ R R    +++G+ +   G+  DI+ +
Sbjct: 270 MESAHEAQFSVGDYLFSNELRMRHRLGHWVWVLSRGRVTRFSASGEPVIMSGVHGDISAR 329

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           K   +             + N + FL RLT          +    V+ ++
Sbjct: 330 KSLEKD------------LQNERDFLLRLTETSISGILALDGDGVVLFVN 367



 Score = 85.4 bits (210), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 17/218 (7%)

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                  ++           +      L+ +               +++Q       V I
Sbjct: 7   SAVSMPLVVAGAYAAISTIYIFASDRFLVLV--------ADSYAHYELLQTYKGWAFVAI 58

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGE---RQSLAVLGSGDIVWD---WDIVRDRVTTTP 432
             L  + ++ +  A G  +Q +    +   R  LA+  +G  VW+        + V  + 
Sbjct: 59  TSLFLWIILSY--AWGRINQTLRETLQLQRRFRLALDAAGGGVWEERSTHGGGESVHLSG 116

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A  +GL    M          +H  D   F   + S             R+ A D ++
Sbjct: 117 RLAEQIGLN-SEMDFRHAELRKLVHPEDLPTFDARVKSTDEPIEVVQDTTCRILANDGEY 175

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            W+ I    +++   +  + +G+A D+TEQK   + + 
Sbjct: 176 RWVRIVSEVIADHPDEPGQVVGVALDVTEQKDIAQQLQ 213


>gi|188590564|ref|YP_001920799.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500845|gb|ACD53981.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 785

 Score =  423 bits (1087), Expect = e-115,   Method: Composition-based stats.
 Identities = 121/560 (21%), Positives = 248/560 (44%), Gaps = 25/560 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   +  + +      VW  DI    V      A    ++   + G I +   +   +
Sbjct: 244 LKNKDAKLQMLMDNLPFPVWLTDINAKYVNGNKKFADYFSVSMDKLIGRIPH--EFFGED 301

Query: 460 DRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +  +     +  +  R  + + ++   +N+   + I   P+ +   +++       D
Sbjct: 302 IVKDIYSQNKEVMEAKETRKFESDIKI---NNEIRSVEIYKTPVLDIGNEVIGITSALID 358

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT+ K++   I   AF D LT I NR +  D +          D     +M++DID +K 
Sbjct: 359 ITDIKEAQRKIKKQAFTDALTQISNRTALYDYMKN------ESDYSNIGMMLVDIDNFKD 412

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD V+V +   + ++      + R  G+ F  +     N   I D A  + 
Sbjct: 413 INDYYGHNFGDKVIVHVANELKKICND-AFICRFGGDEFLAVFKGVENENIICDKAEKIL 471

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I M     +  +++  +IG           + +L   +LAMY +K  G N    +   
Sbjct: 472 EKIHM-YKEHDFSVSIGIAIG-----DDISDINRLLVKVDLAMYKSKELGKNRFMKYTKE 525

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + +  ++DL  A+  +E+ + Y P   + D ++ G EAL +W   K+ N+   +
Sbjct: 526 LEAEKNLTLNIEKDLKYAIAKNEVKVFYQPQYTI-DRKLKGFEALFRWKSKKYANVPVIK 584

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            + + E   +I  +  +++    +      +      I + INI++  +++ +  + +++
Sbjct: 585 IIEVMESSNLIIDMGYYIMREACKFAKKINENRKD-KIVVSINISAIQIMEKDFIKKVKS 643

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I+KT      I +  +E+V++ N E + + +  L+ +G++++LDDFGT  S L+Y+  +
Sbjct: 644 IINKTGVYIDCIGIEITETVLVKNIEENIMKIKELKDMGVTISLDDFGTGYSSLNYIVNM 703

Query: 877 PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S ++G   K+  I  LR II  A ++   I+A+ +  E  + +L +M  DY
Sbjct: 704 PLSLIKIDKSFISGMNVKKEYIKLLRLIIASAHSLNLPIVAEGVETEEQLAKLNKMNVDY 763

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q    + P+      KLL+
Sbjct: 764 VQGFLFSKPVEEEKAFKLLE 783



 Score = 41.1 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 10/135 (7%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDN 463
           +    +  +  + W  D   + +    +     G     + G   +  W   +   DR  
Sbjct: 132 QFDALLNNTPFMAWFKDKDSNYIKVNNEFMEHSGKTMNQIKGNGDHYVWSGMV--GDRCR 189

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                D  V  +R ++ ++  +      F    +   P+ N   +++  IGIA DIT+ K
Sbjct: 190 ---QFDLEVMNKRTQVVFDEIIPGEKG-FKQFNMYKAPVINEFDEVIGTIGIARDITDLK 245

Query: 524 KSLEGILCNAFQDNL 538
                +      DNL
Sbjct: 246 NKDAKLQML--MDNL 258


>gi|209546562|ref|YP_002278480.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537806|gb|ACI57740.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 788

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 204/456 (44%), Gaps = 33/456 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KKS       A  D LT +PNR  F  R    L  +  + + R  V ++D+D++K +N
Sbjct: 318 ELKKSELHARQLALHDVLTDLPNRALFAMRFDECLAET-RNSSERSAVALLDLDRFKAVN 376

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA-DFAIAMRK 639
           D  G A GD+++     RI  +L+  D LARL G+ F ++L    +  ++      A+  
Sbjct: 377 DTFGHAAGDELIRMAAERIRAILRPGDTLARLGGDEFALLLRDIKDHDQVLPAICEAIVA 436

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  P  LL  E    V  SIG      +   + ++++ A++A+Y AK  G      +  
Sbjct: 437 ELGKPFPLLHGEAVARVGGSIGVTVVPDAGRNADDIMRYADVALYEAKMGGRGQWRLYSP 496

Query: 698 SSFRSDRVM--IKEDLCL-------------------AVENSELYLVYHPIIRLMDEEIV 736
           S          +K +L                       +   L + Y  + R       
Sbjct: 497 SMDGGRNARDILKNELREVLAKGTASSAGSPSDPIATRPDFGSLEVYYQTVHRADGGYAA 556

Query: 737 -GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EAL++W H + G ++ + F+ +AEE  +I A+  ++L    R    W D       F
Sbjct: 557 SGAEALVRWRHSQRGLLTPASFIPVAEEGGLIDALGFWVLREACRAACKWPD-----DTF 611

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++   L      E + A++ ++   PSR++L  +ES ++ +      +L  LR  G
Sbjct: 612 VAVNVSPAQLRRPNFAEEVFAVLEESGLPPSRLELELTESSLIEDNSDVYSVLKSLRSRG 671

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTI 913
           + ++LDDFGT  S LS+L     D +K + S ++  G+     AI+ +I+ +++N+  + 
Sbjct: 672 VQISLDDFGTGFSCLSHLMRFDIDRIKIDRSFVSLLGTKANGAAIIGAIVALSRNLGIST 731

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            A+ +  E     L  +GC  +Q    + P+    +
Sbjct: 732 TAEGVETEYQRDFLAALGCTDLQGYFFSKPVPLREL 767


>gi|254458042|ref|ZP_05071469.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207085435|gb|EDZ62720.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 760

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 221/451 (49%), Gaps = 11/451 (2%)

Query: 510 LRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           + +  +  +I T +++    ++     D LTG+PNR    + +        T       V
Sbjct: 315 IVFFLLFRNIATSEERKNRELIYQVQHDTLTGLPNRTYMYENIKKY----KTKHREIYHV 370

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D +K IND  G  VGD +LV +  R+       D+L R  G+ F I+L    +  
Sbjct: 371 LYIDLDNFKNINDKFGHTVGDKILVEVAHRLNSFFDEEDMLIRQGGDEF-IVLRECIDET 429

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HR 687
           KI +    +   I+   ++  +E  + AS+G A +    +T  E+L  A+ AMY AK  +
Sbjct: 430 KIEENLETLITLISKVYHVDSKEFRIGASVGIAQYPVDALTIEELLSLADTAMYEAKKRK 489

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
               + S ++      +  I+ +L  A+EN+EL++ Y P I   D  + G+EALI+W++ 
Sbjct: 490 NSYCLFSEKMRHNNIVKSDIEYELRGAIENNELWMAYQPQIN-ADGTLYGVEALIRWENK 548

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           K G +   +F+ IAEE  +++ +  F++    R+I   + +      ++ INI+   L++
Sbjct: 549 KLGFVGPDKFISIAEETGLMRELGDFIISTSLREIEKIQTKL-DMRFYLSINISVVQLIE 607

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +    +   +    +  + + L  +ES+ + + +    LL  +++  I ++LDDFGT  
Sbjct: 608 ADFLANLLREVENAKFDRASLTLEITESLSIESLDDVLPLLYEIQEHNIKISLDDFGTGY 667

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L  +P + +K + S +      E   A+++SII + KN     +A+ +     +K
Sbjct: 668 SSLSMLRELPINELKIDKSFIDKILYDENEKALVQSIINIGKNFNMKTLAEGVESNDQVK 727

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L  + CD  Q  + + PL   ++++ LK+ 
Sbjct: 728 VLKALNCDIFQGYYYSKPLSKENLIEFLKKE 758


>gi|323703123|ref|ZP_08114777.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531900|gb|EGB21785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum nigrificans DSM 574]
          Length = 547

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/541 (21%), Positives = 227/541 (41%), Gaps = 27/541 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           +      ++   +    +   P    +LG+ +   +                +     L 
Sbjct: 1   MNNLDVGIFICGMDYYFLDANPAFLRLLGVESIKELQQKSFASF-------CEVCNEELK 53

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  +      E R++  +    W  +        +G     +GI +DI E+KK+ + +
Sbjct: 54  EIIQRKGYIKNLEVRIKQENGNSFWATLTAVLRPLQDGH--YIMGIMDDIDERKKTEKKL 111

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LT IPNR S  + L   ++ + T   L   +++IDID +K +ND +G   GD
Sbjct: 112 QYLATHDSLTNIPNRYSLEEALRLAVEKAKT--GLESALLLIDIDNFKLVNDTMGHTAGD 169

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
            +LV  T  + + ++  D +AR  G+ F II+       ++ D A  +R ++    + + 
Sbjct: 170 KLLVQFTEILQKNIREGDFVARFGGDEFAIIIEGI-EKNEVLDMADRIRNAVYENEVIVG 228

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--- 705
              + ++ SIG        +   ++L  A++A+Y AK  G N V     +   S      
Sbjct: 229 STRLNLSISIGIVLI-DGTLDYQKILSKADIALYKAKEEGRNRVAYIHHNEDASLEFIKI 287

Query: 706 -MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
               + +  A+    L L Y PI+ L   EI+  EAL++        +S  EF+ +AE  
Sbjct: 288 NHQIKAIKQALREDRLVLYYQPIVSLNKGEILHYEALVRLLDDDNKILSPGEFIPVAERF 347

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++  I+ ++++   R +        +P I I +N+++  LL+  L   ++  I  +   
Sbjct: 348 GLMAEIDHWVIQAALRKLSE------VPEIKIFVNLSAVSLLNKGLLVCIEEDILNSGVD 401

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PSR+    +E+  + +   +   L +L+KIG    LDDFG   S  SYL  +  D +K +
Sbjct: 402 PSRMGFEITETSAIKDLAVTERWLHKLQKIGCRFALDDFGIGFSSFSYLLNLSVDYIKID 461

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GS +           ++ ++  +A       IA+ +  E     L  +  +  Q  +   
Sbjct: 462 GSFVKNIDSNPAHFTLVYAMNKVAHAFGKKTIAECVENESIANMLRDLKINCGQGYYFGR 521

Query: 943 P 943
           P
Sbjct: 522 P 522


>gi|308050625|ref|YP_003914191.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
 gi|307632815|gb|ADN77117.1| diguanylate cyclase/phosphodiesterase [Ferrimonas balearica DSM
           9799]
          Length = 761

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/606 (20%), Positives = 269/606 (44%), Gaps = 43/606 (7%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV--LGSGDIVWDWDIV 424
            Q +       +V      V+   + +   ++ +    ER+ LA     + D +    + 
Sbjct: 177 TQQSTRANTRYVVSFSVLIVLLAFIGSVVANRLLTDRSERRRLAAFADRNPDPILSVTLQ 236

Query: 425 RDRVTTTPDIATIL---GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
              ++  P  A +    G+               +  +      T L            +
Sbjct: 237 GQLLSLNPAAAQLAQDQGIPPNP---------QLLVPD----LTTQLARMQREAISDYDW 283

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           EF +        ++  R   ++    ++ +      DIT   ++   +   A  D LTG+
Sbjct: 284 EFAL-----GRRYLTARAVMLA----ELKQVQVHLRDITAASRAEAELRHRASHDQLTGL 334

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F   L   L           T  ++ ++++ ++   +G   GD +L + ++R+  
Sbjct: 335 PNRHQFE--LDAQL-QIEQHPEQSLTFGLLTLNRFHQVTSQVGFQAGDAILRTCSQRLCR 391

Query: 602 LLKFPDIL------ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--EIT 653
            L   +++       R  G RF I++  + ++  +A+ A  +      P+          
Sbjct: 392 ALNPFNLIDRPIVLYRFGGTRFAILIQGQVSTDTLAELADTIADVFHKPVYADNAPASFH 451

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKEDLC 712
           ++   GFA +      S E+L+ A+ A+   +    N+V  +  +       + ++ +L 
Sbjct: 452 LSVEQGFARYPEHAANSQELLRCADAAVREPRQDDANYVLYAPALREQEDRLITLENELH 511

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++ ++  L + P  RL D  ++G EAL++W HP  G +S +EF+ +AE   +I +I  
Sbjct: 512 QAMKENQFLLYFQPQQRLCDGAMIGAEALLRWQHPTRGVLSPNEFIHLAERTGLIVSIGE 571

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L         W++Q +   + I +N++++ +   +  E +  ++++T   P +++L  
Sbjct: 572 WVLTEACIQARQWQEQGHD--MLISVNLSARQMQQADFVERVTTILARTGAPPHKVELEL 629

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES++M + +R   +L +L+ +G+ L +DDFGT  S L+YL  +P DT+K +   ++   
Sbjct: 630 TESLLMTDLDRGHDMLCQLKALGLKLAIDDFGTGYSSLAYLKRLPMDTLKIDRRFVSSLP 689

Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +   AI+R+I+ +A++++  ++A+ +  +     L R GCD +Q    + PL  +  +
Sbjct: 690 GDKQDGAIVRAILDLAEHLDLNVVAEGVETQAQHDWLKRAGCDVLQGYWYSRPLACSDWV 749

Query: 951 KLLKER 956
           ++++ R
Sbjct: 750 RMVESR 755


>gi|260770054|ref|ZP_05878987.1| EAL domain protein [Vibrio furnissii CIP 102972]
 gi|260615392|gb|EEX40578.1| EAL domain protein [Vibrio furnissii CIP 102972]
          Length = 604

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 207/440 (47%), Gaps = 9/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++ LE    +++ D LT + NR++F      +      D      ++ +DID +K IN
Sbjct: 157 KLQRQLERYRRDSYTDFLTKLANRKAFTRDTKAL--ERQRDTETHYALLQLDIDDFKLIN 214

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D LG   GD +L  L +R+  L      L R+SG+ F IIL  + +        A  +  
Sbjct: 215 DSLGHQQGDKLLFELAKRLKGLDFSRVDLYRMSGDEFAIILKDQYDIRFYADQVAHYILD 274

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
           + +    L  R   +T SIG A +  +   S    +N ++A+  AK +G N ++ F    
Sbjct: 275 ACSQGFKLDNRSYHMTMSIGIALFEDAMHDSDIWCRNVDIAVLRAKQKGNNIIQHFDEEL 334

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    ++ +L  A+E  +L L Y P + +   E+   EALI+W HP  G IS  EF
Sbjct: 335 IGETIRNYQLERELSNAIEKQQLTLNYQPKVDIKTGEVHSAEALIRWHHPDLGLISPEEF 394

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+   I  I  +++E   +   +W+   +   I I +N+++   L +++   +   
Sbjct: 395 VGLAEKSQQIIPIGRWVIETACKQAKAWQITGHN--ICIAVNVSTVQFLYDDIFNVVTKA 452

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P  ++L  +E+ +M  P+        LR +GI + +DDFG   S L+YL  +P
Sbjct: 453 LRETHLDPKLLQLEITETTLMQQPQNVSETCQDLRTLGIRIAIDDFGVAYSSLNYLSQLP 512

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    +      ++R+II +  N+   + A+ +     +  L   GCD  
Sbjct: 513 IDVLKIDKSFVDNCVNNHDDHMLVRTIIQLGHNMGKVVTAEGVNNHNQLHLLAIEGCDEY 572

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + PL   + ++ +++
Sbjct: 573 QGYYYSKPLPAKAFIERIEQ 592


>gi|157962165|ref|YP_001502199.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157847165|gb|ABV87664.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella pealeana ATCC 700345]
          Length = 724

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/621 (20%), Positives = 260/621 (41%), Gaps = 31/621 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV-IQHVLATGYFSQGIFSDGER 406
            +  + + + I   L+  +             + +     +   LA    +Q  +   ER
Sbjct: 117 ILSVLEVAIRINGHLEGMLSLERKEQTEPWSDLEVQLCSQVADQLALTLATQYGYDKDER 176

Query: 407 QSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYI--HIND 460
            +L   A   S  I+   ++  D +         +  +    + G     L +   + + 
Sbjct: 177 LTLFLSAAEQSEQIMMVVNLATDLIEYVNKAHFNLTKVPKEKVLGRKVQVLDFFKQYPD- 235

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                 +L           + E  +   D   +WM   ++   +  G+    +  A + T
Sbjct: 236 --LSDEVLKKAREGEAS--EEEVYLVRDDGSSYWMRFSVKRFISERGNHFALVN-AENCT 290

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      +   A++ +LTG+ NR  F   L           +    +++ID+  +K+ N
Sbjct: 291 EEHYHQNELFRLAWRCSLTGLYNRTHFSRVLEK---------SHTGHLVMIDLRGFKRFN 341

Query: 581 DVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           D  G A GD +LV + RRI     +     +AR+  + FGI+  S ++   I      + 
Sbjct: 342 DTYGHANGDIILVEIARRIRHFAEVNKISEVARIGSDEFGILFESGSSEAWIEQATERLY 401

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +   I +   +I    ++     +S +   S +   A++A+ +AK+R GN ++ F  +
Sbjct: 402 HQLEATITIGIEQIEPRPALARVDLSSIEQKFSAL-TCADIAIQYAKNRQGNAIQLFNSA 460

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +   +   I+ DL LA++  +  L Y P+  L  +  +G EAL++W HPK G +    
Sbjct: 461 LLNAFKEDAQIERDLALAIKGRQFELYYQPLKDLATQSYIGAEALLRWHHPKKGVLYPGA 520

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I  I  ++LE   + +  W+       I + +N++++    + L E +  
Sbjct: 521 FIDIAEQTGLINDIGSWVLEAACKQLNLWQRH--QIDISMHVNVSARQFFSSNLFEQVWE 578

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+++    P+ + L  +E+ +M +   +  L   L  +G+ L +DDFGT  S + YL   
Sbjct: 579 LVTRYRLKPNSLILEITETELMEDIRSATNLCHELAALGVGLAIDDFGTGYSSMRYLKQF 638

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S ++    + +   I+ +II MA  +  ++ A+ +  +   + L +  C  
Sbjct: 639 PISKLKIDRSFISDLSVSRESREIVSAIIAMASALNISLTAEGVETKEQEQFLAKHLCHQ 698

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    +  L  +   + L++
Sbjct: 699 AQGFLYSPALRVSEFGQFLQK 719


>gi|297156985|gb|ADI06697.1| putative phosphodiesterase [Streptomyces bingchenggensis BCW-1]
          Length = 726

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 110/426 (25%), Positives = 212/426 (49%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T LD +      R  ++++D+D+++ +ND LG   GD +L+
Sbjct: 252 LRDPLTGLPNRQWLLERTWTALDEAERS-GTRSALVLLDLDRFRSVNDTLGHLAGDRLLL 310

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L     +ARL G+ F ++L + ++       A ++   +  P++L    + 
Sbjct: 311 QIADRLRLALPGGAEVARLGGDEFAVLLPTTDSLTSAQRAARSLVGDLGSPLDLDGLTLV 370

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  +   R      DR+ +  DL 
Sbjct: 371 LEASAGVAVYPDHALDAEGLLRRADVAMYQAKRDRSGVELYEARRDGNTPDRLGLLGDLR 430

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  ++ L Y P +   D  + GLEAL++W HP  G +   EF+ +AE   ++  +  
Sbjct: 431 RALDAGDVELHYQPKVGF-DGHVSGLEALVRWVHPVRGRVPPDEFISMAETSGLMPRLTE 489

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR      P  + +N++ +D+        +   +++       ++L  
Sbjct: 490 YVLETALGQVARWRADGLDVP--VAVNVSPRDVHSPGFAGAVAGRLARHGVPAGALQLEI 547

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 548 TEHVLLEDPQRAADTLASLTGHGVRMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 607

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   VA+ +  +   
Sbjct: 608 VDNEDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWLVAAAMPPDETT 667

Query: 951 KLLKER 956
             L+ R
Sbjct: 668 AWLRAR 673


>gi|15893919|ref|NP_347268.1| signal transduction protein [Clostridium acetobutylicum ATCC 824]
 gi|15023503|gb|AAK78608.1|AE007578_6 Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium acetobutylicum ATCC 824]
 gi|325508046|gb|ADZ19682.1| Signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain (GGDEF) and domain
           (EAL) [Clostridium acetobutylicum EA 2018]
          Length = 772

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 216/435 (49%), Gaps = 7/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     + +   +  D +T + NR+    RL  I++    D+    T++ ID+D +K IN
Sbjct: 335 ELLLKNQELEYISNHDPITNVYNRRYLNKRLQCIINEKKLDNQ--VTILYIDVDGFKTIN 392

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD VL+ ++ R+ + +K  +ILARL G+ F II+  + +  +I +    +  S
Sbjct: 393 DTYGHDIGDYVLIEISDRLKKTVKENNILARLGGDEFVIIIEGKLSKEEIKNICEKLINS 452

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
               I        VT SIG A +    I+ + ++KNA++AMY AK +G N    F   VS
Sbjct: 453 CKETIYSDNYLFNVTISIGVAMFPHDAISRNVIMKNADIAMYDAKSKGKNRYSFFDSHVS 512

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   ++  I+  L     + E  L Y P I +   +++G+EALI+W  P  GNI  ++F+
Sbjct: 513 NEILEKGEIELLLRNVDYDKEFELYYQPQIDINTNKLIGVEALIRWHSPIMGNIPPNKFI 572

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE   I+ I  +++   A+ I  W ++     I + INI+   L+  +    ++ ++
Sbjct: 573 KIAEETGSIEKIGQWVMNTAAKQIGIWNEKF-DSNIRMSINISPNQLVSIDFASDLEKIM 631

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       I +  +E++ M      + +   L  +GIS+++DDFGT  S LSY+    F
Sbjct: 632 KKYGLKSDWIDIEITENIAMKGEGIFKQIFLTLDNMGISISIDDFGTGYSSLSYIQKFSF 691

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K    L+        +  I+++I+ +++ +    IA+ +  E  +  +  +GC+ +Q
Sbjct: 692 NRLKIAKELIDNITIDLNKRHIVKAIVMLSEGLNILTIAEGVETEDQLNIVKEIGCNQVQ 751

Query: 937 DSHVASPLGFNSILK 951
               + P+  +   K
Sbjct: 752 GYVYSKPVTADRFEK 766


>gi|318603774|emb|CBY25272.1| conserved putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 664

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/489 (23%), Positives = 230/489 (47%), Gaps = 10/489 (2%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R    + E  V     +  ++       S S  +    I    DIT+++++ E +   A
Sbjct: 177 QRGASYEAERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILA 236

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D +TG+PNR +  +R+ + +    T  +    ++ +D+D +KK+ND  G   GD +L 
Sbjct: 237 NTDMITGLPNRHAIHERINSAI---QTRGDSSVGIIYLDLDNFKKVNDHYGHMFGDRLLK 293

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++  I   L   ++LARL G+ F +++ +      +      +   + +P  +   E+ 
Sbjct: 294 DVSLAILSCLGDNEMLARLGGDEFIVLVENAT-LNLLETTTQRILNRMKLPFRIGLIEVY 352

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
              SIG A       T   ++++A+  MY AK  G      F     +   + V +  +L
Sbjct: 353 TGCSIGIALCPEHGDTLENIIRSADTTMYTAKEHGKQTYSIFSQQMNKKVSEYVWLDTNL 412

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  +L + Y P I     +++G+EAL++W  P+ G I+  EF+  AEE  +I+ + 
Sbjct: 413 RKAIEQHQLQIFYQPKISTKTGKVLGVEALVRWLSPERGLIAPQEFISYAEESGLIRPLG 472

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L+   +  + W+ +     + I +N++++ L+D  +       +       S + + 
Sbjct: 473 KWVLQTSMQQAVDWKKRGIN--LRIAVNVSARQLIDEAIVTSFIESLEACELESSLVDVE 530

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES ++ N + +  ++ +LR +G  + LDDFGT  S LS L  IP D +K + S +   
Sbjct: 531 LTESCLIDNEDAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHI 590

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  +++R+II +A+ ++  +IA+ +  + + + L  +G D  Q    A P+  + +
Sbjct: 591 DTNPISQSLVRAIIVVAEALKMQVIAEGVETKEEEEFLDSIGVDEKQGFLYAKPMPADKL 650

Query: 950 LKLLKERFP 958
              L  + P
Sbjct: 651 EHWLVTQHP 659


>gi|150015540|ref|YP_001307794.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902005|gb|ABR32838.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 581

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 133/529 (25%), Positives = 258/529 (48%), Gaps = 27/529 (5%)

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +  ++ ++   D+ N  +     +      R ++Q ++++ +        I+  + + +
Sbjct: 52  TLDQFINFVGEEDKQNVLSFFSQDLKRHYINREQMQLQYKMESPRGNIVEFILVGKSIKS 111

Query: 505 SNGDILRYIGIAN----------DITEQKKSLEGILCNAFQDNL------TGIPNRQSFL 548
              +   + G +           DI    K+ +  + N   D++      TG+PN+  F 
Sbjct: 112 --NEQYYFTGTSYCFKDLENEYGDIDSLTKNWKESMVNKTIDSIIHSDRITGLPNKYFFK 169

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           + +  +L     + N R  +++ID+D +K +ND  G   GD VL  +   I E +    +
Sbjct: 170 NTVAKMLQNVV-NSNTRAAMLIIDLDNFKYVNDSYGHDFGDLVLKEVGYNIVESVTEDIL 228

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           ++R SGN F +   +  +  +I     A+ KS   P  +  R+I +TASIG +      I
Sbjct: 229 VSRYSGNTFLLFKPNIIDIQEIITLGNAIAKSFEKPNIVNGRKIYLTASIGVSLSPDHGI 288

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHP 726
             + +LKNA+ AMY AK  G N  + F  S          +++ L  A+ N+ELY+++ P
Sbjct: 289 DYNTLLKNADAAMYEAKKNGKNECDFFDDSLSDELNRVYSLQKGLRTALNNNELYVMFQP 348

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + L D  + G EAL +W+  ++G +S +EF+ IAE   MI  I  F+LE + +      
Sbjct: 349 KVSLDDSLVNGFEALARWESREFGMVSPAEFIPIAESSKMIIPIGSFVLEEVFKKTKCLL 408

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           ++ N     I +N++   L ++ +    + LI K    P  I++  +ES++M + +R+  
Sbjct: 409 NEGND-NFKIAVNLSEMQLREDVVLSDFKKLIKKYKIHPKYIEVEITESMLMKSFDRNVK 467

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           +L  ++K+G+S+ LDDFGT  S L+YL  +P D +K + S +       K   I+ +II 
Sbjct: 468 ILQEIKKLGVSIALDDFGTGYSSLNYLTKLPIDVLKIDRSFVIDLMNNPKSKCIVENIIN 527

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++  +   ++A+ +  +  ++ L  + CD +Q  + + P  F++I  ++
Sbjct: 528 LSHQLGIEVVAEGVEEKSQVEYLRTILCDVVQGYYFSKPRMFDAIKNII 576


>gi|189425518|ref|YP_001952695.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter lovleyi SZ]
 gi|189421777|gb|ACD96175.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Geobacter lovleyi SZ]
          Length = 581

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/425 (29%), Positives = 210/425 (49%), Gaps = 11/425 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+P R    +  T  +     D      VM++D+D  K +N  LG A GD VLV
Sbjct: 155 LRDPLTGLPTRNHLQELFTRAVK--KNDFPGSLFVMLLDLDNLKSVNKTLGHACGDRVLV 212

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               R+ EL     ++ RL  ++F I+++   +  ++     A+R+ +A+P      E+ 
Sbjct: 213 ETANRLLELQTEQRVVGRLGADQFIIMVV---DCHEVHGCITAVRQLLAIPYTTGPEELF 269

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDL 711
           VT  IG + +     +   +L+NA  A+  AK  G N    +        R  +  +  L
Sbjct: 270 VTGCIGISVFPHDGESLDRLLQNANAALSQAKQLGTNKYAFYSRDLGERLRERMVRESGL 329

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-HPKWGNISSSEFMLIAEELCMIKAI 770
             A+E  E +L Y P I +    + G+EAL++W    +   +S SEF+ I EE  MI  +
Sbjct: 330 HRALERDEFFLEYQPKIAVQTGMVCGMEALLRWQPTTQGSQVSPSEFIPILEETGMIVEV 389

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++LE   R  + W+ Q  MPP+ + +NI++       L E + ALI +T  +P  + L
Sbjct: 390 GNWVLETACRQHLLWQQQ-GMPPLTLSVNISAVQFHAGNLPETIAALIQQTGIAPDCLCL 448

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+VM + E++   L RLR+ GI L++DDFGT  S L+YL  +P   +K + S +  
Sbjct: 449 ELTESIVMQDIEQTVATLHRLREQGIKLSIDDFGTGYSSLNYLQRMPLTELKIDRSFVMN 508

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +     AI+ S++ ++K++  T++A+ +        LT   C  +Q    + PLG  +
Sbjct: 509 LPQDTSAIAIVDSVLTLSKSLNLTVVAEGVETPQQAAFLTARQCHQLQGYLFSRPLGAAA 568

Query: 949 ILKLL 953
               +
Sbjct: 569 FEAFV 573


>gi|146311190|ref|YP_001176264.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145318066|gb|ABP60213.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 642

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/422 (28%), Positives = 208/422 (49%), Gaps = 12/422 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  + + D+LT + NR  F   L   ++ +   +N   TVM+ D+D++K +ND  G  V
Sbjct: 220 KLEYDVYHDSLTEMNNRHFFWGNLNETIENAVKSNNT-VTVMLFDLDRFKVVNDTYGHDV 278

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +++R+  +    D L RL G+ F  +      S  +   A  +  +I  P  +
Sbjct: 279 GDMLLRQISQRLISMGLTSDTLYRLGGDEFAFLSSGLTESSAV-SLAQNICDAINQPYTI 337

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705
               I +T S+G    + ++  S  + K A+LA+Y AK+   G   V    +     +  
Sbjct: 338 YNTIINITTSVGIV-ISDTERRSDYLYKFADLALYEAKNEGAGKIKVFRQWMLDKLQESR 396

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ D+ LA+ N E  + Y PI+    +EI   EALI+W HP  G +S   F+ +AE+  
Sbjct: 397 TLEHDMALALANKEFVVYYQPIVDSFTQEIYSYEALIRWIHPLKGILSPDTFIPVAEKTG 456

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           MI  +   MLE   R+ +SW     + P  I +N++   L        + +++++T  S 
Sbjct: 457 MINEMGKSMLEMACREAVSW-----VIPAKISVNVSPVQLSSKAFAGIVVSILNETGLSA 511

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +ES +    +     L RLR +G+ +++DDFGT  S LS L  + FD +K + 
Sbjct: 512 ERLELEVTESSLFTESKTPMNTLNRLRTLGVKISIDDFGTGYSSLSRLSRLAFDKIKIDK 571

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +   +  E  + I+R I  MAK++    +A+ +  +  ++ L  +GCD+IQ      P
Sbjct: 572 SFVNSVSTQEDALNIIRLITGMAKSLNMKTVAEGVETQEQLESLQALGCDFIQGYLFGKP 631

Query: 944 LG 945
             
Sbjct: 632 QP 633


>gi|15608494|ref|NP_215870.1| hypothetical protein Rv1354c [Mycobacterium tuberculosis H37Rv]
 gi|15840809|ref|NP_335846.1| hypothetical protein MT1397 [Mycobacterium tuberculosis CDC1551]
 gi|31792550|ref|NP_855043.1| hypothetical protein Mb1389c [Mycobacterium bovis AF2122/97]
 gi|121637285|ref|YP_977508.1| hypothetical protein BCG_1416c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148661143|ref|YP_001282666.1| hypothetical protein MRA_1362 [Mycobacterium tuberculosis H37Ra]
 gi|148822575|ref|YP_001287329.1| hypothetical protein TBFG_11384 [Mycobacterium tuberculosis F11]
 gi|167969102|ref|ZP_02551379.1| hypothetical protein MtubH3_14158 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403201|ref|ZP_03415382.1| hypothetical protein Mtub0_05786 [Mycobacterium tuberculosis
           02_1987]
 gi|215410998|ref|ZP_03419806.1| hypothetical protein Mtub9_06623 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426682|ref|ZP_03424601.1| hypothetical protein MtubT9_09923 [Mycobacterium tuberculosis T92]
 gi|215445535|ref|ZP_03432287.1| hypothetical protein MtubT_06177 [Mycobacterium tuberculosis T85]
 gi|218753063|ref|ZP_03531859.1| hypothetical protein MtubG1_06299 [Mycobacterium tuberculosis GM
           1503]
 gi|219557257|ref|ZP_03536333.1| hypothetical protein MtubT1_08092 [Mycobacterium tuberculosis T17]
 gi|224989759|ref|YP_002644446.1| hypothetical protein JTY_1390 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253799598|ref|YP_003032599.1| hypothetical protein TBMG_02624 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231604|ref|ZP_04924931.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254550366|ref|ZP_05140813.1| hypothetical protein Mtube_07885 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200409|ref|ZP_05767900.1| hypothetical protein MtubT4_09843 [Mycobacterium tuberculosis T46]
 gi|260204614|ref|ZP_05772105.1| hypothetical protein MtubK8_09956 [Mycobacterium tuberculosis K85]
 gi|289442797|ref|ZP_06432541.1| GGDEF protein [Mycobacterium tuberculosis T46]
 gi|289554854|ref|ZP_06444064.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289569367|ref|ZP_06449594.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574020|ref|ZP_06454247.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745106|ref|ZP_06504484.1| GGDEF protein [Mycobacterium tuberculosis 02_1987]
 gi|289749910|ref|ZP_06509288.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289757459|ref|ZP_06516837.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761515|ref|ZP_06520893.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297633906|ref|ZP_06951686.1| hypothetical protein MtubK4_07280 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730894|ref|ZP_06960012.1| hypothetical protein MtubKR_07375 [Mycobacterium tuberculosis KZN
           R506]
 gi|298524861|ref|ZP_07012270.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|307079352|ref|ZP_07488522.1| hypothetical protein TMKG_01857 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083917|ref|ZP_07493030.1| hypothetical protein TMLG_03446 [Mycobacterium tuberculosis
           SUMu012]
 gi|313658227|ref|ZP_07815107.1| hypothetical protein MtubKV_07395 [Mycobacterium tuberculosis KZN
           V2475]
 gi|54040088|sp|P64826|Y1389_MYCBO RecName: Full=Uncharacterized protein Mb1389c
 gi|54042519|sp|P64825|Y1354_MYCTU RecName: Full=Uncharacterized protein Rv1354c/MT1397
 gi|1419057|emb|CAA99987.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13881005|gb|AAK45660.1| GGDEF protein [Mycobacterium tuberculosis CDC1551]
 gi|31618139|emb|CAD94250.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492932|emb|CAL71403.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600663|gb|EAY59673.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|148505295|gb|ABQ73104.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148721102|gb|ABR05727.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224772872|dbj|BAH25678.1| hypothetical protein JTY_1390 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321101|gb|ACT25704.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289415716|gb|EFD12956.1| GGDEF protein [Mycobacterium tuberculosis T46]
 gi|289439486|gb|EFD21979.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289538451|gb|EFD43029.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289543121|gb|EFD46769.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685634|gb|EFD53122.1| GGDEF protein [Mycobacterium tuberculosis 02_1987]
 gi|289690497|gb|EFD57926.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289709021|gb|EFD73037.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713023|gb|EFD77035.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494655|gb|EFI29949.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308362805|gb|EFP51656.1| hypothetical protein TMKG_01857 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366452|gb|EFP55303.1| hypothetical protein TMLG_03446 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720171|gb|EGB29274.1| hypothetical protein TMMG_02055 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902977|gb|EGE49910.1| hypothetical protein TBPG_00834 [Mycobacterium tuberculosis W-148]
 gi|328459344|gb|AEB04767.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 623

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 8/450 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +  +  +   +   A  D+LTG+ NR++ L  L   L             + +D+D+
Sbjct: 167 FAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLA---PGQPGPVAALFLDLDR 223

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K IND LG A GD  +    +RIG+ L    ++ARL G+ F +I  S  ++      A 
Sbjct: 224 LKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAE 283

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +R  +   + +    +T T SIG AS T  + T S++L+ A+ A   AKH GG+ V  F
Sbjct: 284 RLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIF 343

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S  +   I+  L   +E+  L LVY P + L   +IVG EAL++W HP  G ++
Sbjct: 344 TADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLA 403

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE + +   ++ ++L R   +   W+         + IN+++  L+     + 
Sbjct: 404 PGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDALLRINVSAGQLVTGGFVDF 463

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I +     S + L  +E+VV+ +   +R  L RL+++G+ + +DDFGT  S +S L
Sbjct: 464 VADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLL 523

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K + + +   G+    + I+R I+ +A+  +  ++A+ +  E   + L    
Sbjct: 524 QTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQR 583

Query: 932 CDYIQDSHVASPLGFNSILKLL-KERFPLV 960
           C   Q    + P+   ++  +L   R P  
Sbjct: 584 CYRAQGFLFSRPVPGEAMRHMLSARRLPPT 613


>gi|56477570|ref|YP_159159.1| phospholipase A2 family protein [Aromatoleum aromaticum EbN1]
 gi|56313613|emb|CAI08258.1| Phospholipase A2 family protein [Aromatoleum aromaticum EbN1]
          Length = 626

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 209/443 (47%), Gaps = 7/443 (1%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I         +++ E I   AF D+LT +PNR S    LT+ ++   T  N    +++I 
Sbjct: 167 IATLRVREGHRRAEETIRRMAFYDSLTDLPNRTSLQQELTSAIETLHTAHNP-LALLLIK 225

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           I  +++I+D LG    D ++  + RR+ +L      +AR   + F + L +  ++     
Sbjct: 226 IGHFQEISDTLGYEEADLLVQEMARRLSQLAGEGRAVARAGEDEFALSLPN-TSAEVAIR 284

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNH 691
            A  + + +  P+ L    +   A IG A +     T+  +L+ A++A   AK       
Sbjct: 285 LAQRIMREVCDPVPLGPLTVDPHAHIGIAMFPGHGNTADAILRRAKIAAVQAKRTVAKFA 344

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +         + R+ +  DL  A++ +EL L   P + +   E+ G EAL++W H + G 
Sbjct: 345 LYQGSADQECTRRLALMSDLRSAIDKNELQLYCQPKVSISSGEVCGAEALVRWPHAQHGM 404

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I++ EF+ +AE   +I  +  ++LE   R   +W +Q    P  + +N++++DL D  L 
Sbjct: 405 IATGEFITLAERAGLIMPLTRWVLETAFRQSHTWFEQDIRQP--LSVNLSAQDLRDPRLV 462

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L +     P  I+   +ES +M +P  +   L RL+ +G+ L +DDFGT  S LS
Sbjct: 463 DRISGLFATWAMPPEMIQFELTESALMEDPIGALKTLQRLKALGVELFIDDFGTGYSSLS 522

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D++K + S ++          I+RS + +  N+   ++A+ +  E     L  
Sbjct: 523 YLQKLPVDSLKIDQSFVSSMLTNAGSAVIVRSTVELGHNLGLGVVAEGVESEAQWDGLRA 582

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
           +GCD  Q   V  P+        
Sbjct: 583 LGCDTAQGHFVGFPIPTEQFADW 605


>gi|88810874|ref|ZP_01126131.1| sensory box protein [Nitrococcus mobilis Nb-231]
 gi|88792504|gb|EAR23614.1| sensory box protein [Nitrococcus mobilis Nb-231]
          Length = 881

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 131/601 (21%), Positives = 259/601 (43%), Gaps = 26/601 (4%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           + ++       +  I +    T+ +           +F   E  ++A           + 
Sbjct: 290 SRMLTNTAGETVGSIAVARDVTLERRAEEALQLHASVFETAEPLAIA-----------NR 338

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            R  +        + G  +  + G  R  L        ++    L   +     +   E 
Sbjct: 339 ERVFLRVNHAFTRMFGYPAEEITG--RTLLELQPDQSPEDLFARLWGELEA-TDQWSGEL 395

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             R  D     + + +  + +  G I  Y+    DI+E+K     I C A  D LTG+PN
Sbjct: 396 WERRRDGTLIPVRLTMSTVRDGEGTITHYVAHWQDISERKTFEAQIQCQALYDPLTGLPN 455

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+    RL   L  +         ++ +D+D++K+IND  G A+GD +L S+ +R+  LL
Sbjct: 456 RRLANSRLEQELGRAQRLTGF-GALLFLDLDRFKQINDAHGHAIGDALLASIAQRLQNLL 514

Query: 604 KFPDILARLSGNRFGIIL-----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +  D++ARL G+ F ++L       +  + +       +  +I  PI +   E++V+AS+
Sbjct: 515 RIEDMVARLGGDEFVVLLGSEPGTRDEAAARAHRVGEKILAAIREPIAIDAYELSVSASV 574

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVE 716
           G A +    + ++++L+ A+ AMY AK  G N +  F     +    R     +   +V+
Sbjct: 575 GIALYPDVDMNAADLLQRADSAMYRAKEDGRNTIHFFAETSRTELEYRQSRFCEHHPSVD 634

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + +L L Y PI  +    +  +EAL++W   + G    + F+ + EE  +  A+  + L 
Sbjct: 635 DEQLLLSYQPIADIR-GRLASIEALVRWQSSERGLCLPTRFLTVVEETGLTAAVECWALS 693

Query: 777 RIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
            I R + +W+     P  + + +NI+ + L  ++    ++ ++  +   P  + L  +E+
Sbjct: 694 AICRKLAAWQSVGVFPNWLRLAVNISPQLLTLHDFPRHLRRILRDSGVQPQALVLEITEA 753

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            +  + ++    +   R  GI  ++D+FG   + L+ L  +P DTVK   +L+       
Sbjct: 754 ALCNDMQQLAGAMRATRGWGIGFSVDEFGIGHTSLAQLELLPIDTVKIAQTLVAEVPGDA 813

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +   L + + MA  +   + A+ I        L   GC   Q S V++PL   +++ LL
Sbjct: 814 AKARALETALRMAGRLGVDVAAEGIDTHEQFDCLRSGGCRLFQGSCVSAPLTEEALIALL 873

Query: 954 K 954
           +
Sbjct: 874 R 874



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 3/155 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++ F  ++ +      ++ + +  E     +  +   +   D     V        I G 
Sbjct: 171 VLQFVFVRDISVQRAAAEQVRALNEYMDSIIDNADIWLNTLDKEGRIVIWNKAAERISGY 230

Query: 441 ASGSMHGPIRNWLPYIHIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
               + G    W  +++ ++  RD   +     +         E  +R  D++   +  R
Sbjct: 231 RRDEVQGRTDIW-SWLYPDEAYRDWIFSHAMDILERGTVAFDLETTIRTKDSRQIILSWR 289

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            R ++N+ G+ +  I +A D+T ++++ E +  +A
Sbjct: 290 SRMLTNTAGETVGSIAVARDVTLERRAEEALQLHA 324



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 6/180 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
              +     L     Q        +++  +G   +  ++A    S G    G+     V 
Sbjct: 20  LFGLTGAALLFAAFWQAGFDVQAAVVIAAMGGGALGGLIAESRCSLGRPESGQ-YRFMVE 78

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + + +         V   P +  IL      + G    +  Y+  + R   R I    +
Sbjct: 79  RAEEGIAILQ-DGRIVFANPSLGAILRCRQQQLLGQP--FERYVPASQRGRVRAIHRRQI 135

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                   YE  +  AD     + +R   + +  G +L+++    DI+ Q+ + E +   
Sbjct: 136 DGEAASHCYEMELLHADGCEISVQVR-SHVEDQGGQVLQFV-FVRDISVQRAAAEQVRAL 193


>gi|304312444|ref|YP_003812042.1| hypothetical protein HDN1F_28160 [gamma proteobacterium HdN1]
 gi|301798177|emb|CBL46399.1| Hypothetical protein HDN1F_28160 [gamma proteobacterium HdN1]
          Length = 860

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 137/635 (21%), Positives = 263/635 (41%), Gaps = 13/635 (2%)

Query: 326 IIYHGMKGYERAV-LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
             +   +    A        + + +    + +        +  +  +V  L  I   I  
Sbjct: 226 AGFQRWRDDALARGYFSMISLPVALKGQVVAVLSLYSATENDFEGPMVEVLGDICTDITL 285

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +      T        S   + S AV  +   V   D         P    ++G +   
Sbjct: 286 GLRHIDDETRRLENE--SKLRQLSKAVESAATAVIICDSRGIIEYVNPQFVNLVGYSPTE 343

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G   + +   H  D     + + + +       + E   R  D    W    I P+ +
Sbjct: 344 IVGLSVSEIGK-HQEDGIVEDSEIRTILL-SGQEWRGERESRKRDGTVLWTYQHISPIRD 401

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G I  ++    D T+   + E I   A+ D LT +PNR+   DRL   +D +  D + 
Sbjct: 402 EAGRITHFVSTVIDHTDLHFARETIERLAYYDELTALPNRRLSHDRLQHAIDSAQRDGHA 461

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
                 +D+D +K IND +G   GD +L ++++R+ + ++  D +ARL G+ F +IL   
Sbjct: 462 -FAFCFLDLDGFKSINDFMGHEAGDVLLKTVSQRLKQCIRAKDTVARLGGDEFTLILRDI 520

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            N          +  +++ P+ + + E+ VT S+G A +    +  + + +NA++AMYHA
Sbjct: 521 RNPHDATVVVEHVIYALSRPVKIQDTEVAVTTSVGIALYPEDGLDIATLTRNADMAMYHA 580

Query: 685 KHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N    F        +  +  + +L  A E    +L+Y P    +D  ++GLE   
Sbjct: 581 KAQGKNTYRFFTAELNEKVQQRVQKELELRRAFERRSFFLLYQPQFDTVDGAVMGLEIKP 640

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            W+      I  + F  +  E  ++  + L+ +ER   +  S ++    P + + I+I+ 
Sbjct: 641 YWETENGQKIPPAVFWDLLVESGLVVDLVLWAIERAMIETASLKEIL--PQLILSIDISD 698

Query: 803 KDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + L + E   + ++ +  +T    S++ L   ESV+  + +     L +LRK G+ L +D
Sbjct: 699 RHLRNIEVFIQQLEKIAQRTGGRISQLMLEVPESVLSKDVDDIVARLRQLRKKGVKLAMD 758

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
            FGT  S L  L   P + +K + S ++     E   AI  +I+ +A  +E  ++A+ + 
Sbjct: 759 HFGTGSSSLRTLRQFPVELIKIDSSFVSDVLHDENDAAITAAILALAHQLELKVLAEGVT 818

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                + L R  C+ +Q  +         I + L 
Sbjct: 819 SAQHAQFLERYWCECVQGDYYCVDSSIAKIREFLT 853


>gi|315182577|gb|ADT89490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Vibrio furnissii NCTC 11218]
          Length = 604

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 207/440 (47%), Gaps = 9/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++ LE    +++ D LT + NR++F      +      D      ++ +DID +K IN
Sbjct: 157 KLQRQLERYRRDSYTDFLTKLANRKAFTRDTKAL--ERQRDTETHYALLQLDIDDFKLIN 214

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRK 639
           D LG   GD +L  L +R+  L      L R+SG+ F IIL  + +        A  +  
Sbjct: 215 DSLGHQQGDKLLFELAKRLKGLDFSRVDLYRMSGDEFAIILKDQYDIRFYADQVAHYILD 274

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
           + +    L  R   +T SIG A +  +   S    +N ++A+  AK +G N ++ F    
Sbjct: 275 ACSQGFKLNNRSYHMTMSIGIALFEDAMHDSDIWCRNVDIAVLRAKQKGNNIIQHFDEEL 334

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    ++ +L  A+E  +L L Y P + +   E+   EALI+W HP  G IS  EF
Sbjct: 335 IGETIRNYQLERELSNAIEKQQLTLNYQPKVDIKTGEVHSAEALIRWHHPDLGLISPEEF 394

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+   I  I  +++E   +   +W+   +   I I +N+++   L +++   +   
Sbjct: 395 VGLAEKSQQIIPIGRWVIETACKQAKAWQITGHN--ICIAVNVSTVQFLYDDIFNVVTKA 452

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P  ++L  +E+ +M  P+        LR +GI + +DDFG   S L+YL  +P
Sbjct: 453 LRETHLDPKLLQLEITETTLMQQPQNVSETCQDLRTLGIRIAIDDFGVAYSSLNYLSQLP 512

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    +      ++R+II +  N+   + A+ +     +  L   GCD  
Sbjct: 513 IDVLKIDKSFVDNCVNNHDDHMLVRTIIQLGHNMGKVVTAEGVNNHNQLHLLAIEGCDEY 572

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + PL   + ++ +++
Sbjct: 573 QGYYYSKPLPAKAFIERIEQ 592


>gi|86360161|ref|YP_472050.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
 gi|86284263|gb|ABC93323.1| putative kinase/esterase protein [Rhizobium etli CFN 42]
          Length = 790

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 199/457 (43%), Gaps = 34/457 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+S       A  D LT +PNR  F  R    L  +      R  V ++D+D++K +N
Sbjct: 319 ELKRSELHARQLALHDVLTDLPNRALFAMRFEECLAET-RYSTERSAVALLDLDRFKAVN 377

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA-DFAIAMRK 639
           D  G A GD+++     RI  +L+  D LARL G+ F ++L    +  ++      A+  
Sbjct: 378 DTFGHAAGDELIRMAAERIRSVLRPGDTLARLGGDEFALLLRDIRDDDQVLLSICDAIVA 437

Query: 640 SIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  P  L   E    V  SIG      +  T+ ++++ A++A+Y AK  G      +  
Sbjct: 438 ELGRPFPLLRGEAVARVGGSIGLTIVPDAGRTADDLMRYADVALYEAKMGGRGQWRVYSP 497

Query: 698 SSFRSDRVM--IKEDLCL--------------------AVENSELYLVYHPIIRLMDEEI 735
           S          +K +L                        +   L + Y  + R      
Sbjct: 498 SMDGGRNARDILKNELREVLAKGTASSADSAQTGSGSTRPDFGSLEVYYQTVHRAEGGYA 557

Query: 736 V-GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             G EAL++W H + G ++ + F+  AEE  +I A+  ++L    +    W  +      
Sbjct: 558 ASGAEALVRWRHSQRGLLTPASFIPAAEEGGLIDALGFWVLREACKAACKWPVET----- 612

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           F+ +N++   L      E +  ++ +T   PSR++L  +ES ++ +      +L  LR  
Sbjct: 613 FVAVNVSPAQLRRPNFAEEVFTVLEETGLPPSRLELELTESSLIEDNSDVYTVLKTLRSR 672

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           GI ++LDDFGT  S LS+L     D +K + S ++         AI+ +I+ +++N+  +
Sbjct: 673 GIQISLDDFGTGFSCLSHLVRFDIDRIKIDRSFVSQLGAKANGAAIIGAIVTLSRNLGIS 732

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             A+ +  E     LT +GC  +Q    + P+    +
Sbjct: 733 TTAEGVETEYQRDFLTALGCTDLQGYFFSKPVPLREL 769


>gi|170735281|ref|YP_001774395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia cenocepacia MC0-3]
 gi|169821319|gb|ACA95900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Burkholderia cenocepacia MC0-3]
          Length = 935

 Score =  422 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 216/437 (49%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S E I   AF D LTG+PNRQ  + +  ++L  +    +    VM +D++ +K++N
Sbjct: 494 EREGSKERIRRLAFYDGLTGLPNRQLLMSQAESVLAAAVASQH-SFAVMFVDLNSFKQVN 552

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD +L  + +R+   L+  DI+ RLSG+ F I+L    +     DFA      
Sbjct: 553 DTLGHAAGDGLLSEVAQRLKIDLRDTDIVGRLSGDEFVIVLSP-ADIELTLDFAERTMNR 611

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +  P+ + +  +   AS+G A +     +   ++++A++AMY AK  G +    F     
Sbjct: 612 LRQPVQISDTNLRPAASMGIAIFPQHGESIGALMQHADMAMYEAKFAGHHEYRVFEPELM 671

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R  R  +   L  ++   EL L Y P +RL D+ + G+EAL +W H  +GN++   F+
Sbjct: 672 RAREARRKLGLALRDSLVAGELQLHYQPQVRLDDDSLYGVEALARWFHRDFGNVAPDHFI 731

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + EE  ++   N ++L    R +  W +     P  I +NI+     D      + +L+
Sbjct: 732 PLVEECGLVAEFNRWVLTEACRQLAQWCEAGLDVP-RISVNISPTAFRDPAFASLVSSLL 790

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +PS++ L  +E+V++   +     +  +  +G+++ +DDFGT  S LSYL  +P 
Sbjct: 791 GTYKLAPSQLTLEVTEAVLLDATDSVMTTIQDVHSLGVNMAIDDFGTGYSSLSYLRRLPV 850

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + VK + S ++   ++E   +++ S+  +   +  TI+A+ +  ++  + L   G    Q
Sbjct: 851 NEVKLDKSFISNVENSENARSLVNSVADICAKLHLTIVAEGVETDVQRQILQARGYQVAQ 910

Query: 937 DSHVASPLGFNSILKLL 953
               + P+    +   +
Sbjct: 911 GYLFSPPIEAAELPVWI 927



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 9/176 (5%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGS 414
                R+   +   A+     L+ I      I        F      +     SLA+  +
Sbjct: 168 FLQYGRVVGAVSVYAMHERFRLLGIASTVMAILLAATAIAFVVARRREKLNLLSLALNHT 227

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSF 471
                        V        +LG     + G           +D     + R  + + 
Sbjct: 228 DSAAVVTTPDGRVVYANEGFTQMLGYKMSEILGKRPTDFVVGPYSDFGTVSDIRAKVGAH 287

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + ++   L     V +      W++  + P+ ++ G     +GI  DIT  K   E
Sbjct: 288 LSFKTKIL-----VYSKSGHPLWILATVNPVFDARGVCKNVVGIWTDITSTKIHEE 338


>gi|330970405|gb|EGH70471.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 545

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 213/442 (48%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGSVALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H + G +  S+
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRVVGLEALVRWRHQERGLLPPSK 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLTR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S   +L  +
Sbjct: 394 LIAEHDVDARWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + + +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 454 PIALLKIDMTFVGQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELLRSYGCNQ 513

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 514 VQGYLISRPLPVEELVTYLRSE 535


>gi|163851714|ref|YP_001639757.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163663319|gb|ABY30686.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 651

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 206/433 (47%), Gaps = 9/433 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  E     A  D+LTG+PNR+ F  RL  ++  ++   N    + + D+D++K IN
Sbjct: 211 EAQRLGEENQRLAHTDSLTGLPNRRYFFQRLDALIA-ASATGNAAFALAIFDLDRFKPIN 269

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL    RR+         +ARL G+ FG+++ + + +    +    +  +
Sbjct: 270 DTFGHTAGDRVLEETGRRLSAFAADGVTIARLGGDEFGVLIHAADRTADAVELCNRICTA 329

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI+L E ++    S G A + S+   +  +   A+ A+YH+K R       F     
Sbjct: 330 LHAPISLGETQVVPGCSGGLALYPSAGRAADALFDRADYALYHSKERKRGTTTLFSQEHE 389

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + R    ++  L  A   +E+ + Y PI+  + + I  +EAL +W  PK G +    F+
Sbjct: 390 DAIRAERAVEAALQSADLAAEMEMHYQPILDTVTDRITTVEALARWTSPKLGRVPPDRFI 449

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   MI ++ L +L +   D     D      I +  N++S DL   E    + A +
Sbjct: 450 GVAERCGMIHSVTLLLLRKALADAARLPD-----DIGLSFNLSSHDLASPETVIAILAAV 504

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P RI L  +E+ +M + E ++  +  LR +GI + LDDFGT  S L+Y+  +P 
Sbjct: 505 RQSGLDPRRITLELTETALMRDFEGAQKAITLLRALGIKIALDDFGTGYSSLNYVHRLPL 564

Query: 879 DTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +   M         +++ +I+ + +N+    IA+ I     +  + R GC Y+Q 
Sbjct: 565 DRIKIDRGFMADVESDLGRSVVITILDLCQNLGLDGIAEGIETTEQLSAVRRHGCRYVQG 624

Query: 938 SHVASPLGFNSIL 950
             +  P+    +L
Sbjct: 625 YLIGVPMPMTDLL 637


>gi|320332762|ref|YP_004169473.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
 gi|319754051|gb|ADV65808.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Deinococcus
           maricopensis DSM 21211]
          Length = 596

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 207/438 (47%), Gaps = 6/438 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++   +++       A  D LTG+PNR    DR       +     +   ++V+D+D +
Sbjct: 160 RNVLTWQRAEARTAHQAHHDALTGLPNRLLLKDRADLAFRHAHRRGTI-AAMLVVDLDGF 218

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G  VGD+VL     R+ + L+  D +AR  G+ F ++L    + L  A  A  
Sbjct: 219 KTINDTYGHLVGDEVLRLTAERLRDALRAEDTVARFGGDEFVVLLSELRDPLNAARVAQQ 278

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +I  P++  + E+ + AS+G A + +   +  E+L+ A+ AMY AK +G   V    
Sbjct: 279 LLDAIEPPMHFEDHEVQLHASVGIALYPTDARSFEELLRAADTAMYGAKRKGRAQVCFHT 338

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +SS  +D++  ++    A+ + EL L Y P + L    ++G+EAL++W  P    +  
Sbjct: 339 EAMSSAATDKLRFRQRFTAAIASGELRLHYQPQVDLRSGRVIGMEALLRWPQPDGSWVPP 398

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE  +I  +  + L      +  W  Q +     + +N++ K          +
Sbjct: 399 QQFIPLAEETGLIVPLGAWALREACAQLALWHAQGHH-DWHVSVNVSVKQWSAPGFMSIV 457

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  ++ +  SP  + L  +ESV++ +    R +L  +  +G+ + LDDFGT  S LS L 
Sbjct: 458 RDALTTSGVSPGHLILEVTESVLIWDVPGVRSVLNAIEALGVRVALDDFGTGYSNLSRLM 517

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           ++    +K   +LM    E   A  ++ S+I + + +   ++ + +  E+    L  +GC
Sbjct: 518 HVHLSQLKVTPTLMAPVPEADRAARMMSSVISLGRQLSAAVVGEGVETELQRHTLLELGC 577

Query: 933 DYIQDSHVASPLGFNSIL 950
           +  Q      P    ++ 
Sbjct: 578 EIGQGYLFGPPAPPEALR 595


>gi|120597444|ref|YP_962018.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|146294415|ref|YP_001184839.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|120557537|gb|ABM23464.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|145566105|gb|ABP77040.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
          Length = 573

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 209/437 (47%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S + +   A  D+LT + NR  F   L   +  +   +N    V+++D+D +K IN
Sbjct: 128 ALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNNY-LAVILLDLDDFKAIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+ E+L+  D++ARL G+ F +++  ++        A  + K+
Sbjct: 187 DTLGHQTGDILLVKVASRLSEVLRDGDVIARLGGDEFVVLVTDDDYKYFPMIVANRLLKA 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 247 FEEVFCLGDNDVLIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALD 306

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A+  +E  + Y   +  +  ++VG+EALI+W H K G I+  +F+
Sbjct: 307 REVRYRNHIESSLRVALRQNEFKVYYQAQVDSLTHQMVGMEALIRWQHLKDGVIAPDQFL 366

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ +++ I  ++L    R    W  Q         I +N+++  +   +L   +  
Sbjct: 367 PIAEEMGLMEEIGDWVLAEACRQAQIWLTQLKPIGRDFTIAVNLSASQIAQIDLLSKIIQ 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  T   P+ ++L  +E+ ++ +P     +L ++ K+G+   LDDFGT  S L ++   
Sbjct: 427 TLELTGLPPTALELEITENCLIEDPHEHAKVLDQIAKLGVRFALDDFGTGFSSLEHIKLF 486

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A       +A+ +      +  T   C+ 
Sbjct: 487 PISVLKIDKSFIASYDKDEKDTRLLAALLNFAYGFNVISVAEGVETLEQAEFCTARNCNI 546

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL       
Sbjct: 547 LQGYLFSRPLEAIDFEA 563


>gi|84385122|ref|ZP_00988154.1| Predicted signal transduction protein [Vibrio splendidus 12B01]
 gi|84379719|gb|EAP96570.1| Predicted signal transduction protein [Vibrio splendidus 12B01]
          Length = 779

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 209/436 (47%), Gaps = 10/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++   ++  A  D LT +PNR      ++  ++    D++   +++ IDID +K +ND
Sbjct: 325 EQRTRSQLIYQANHDPLTSLPNRLYMRRNISKWIE----DESEPFSLLFIDIDNFKCVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +  R+        +L R S + F + L   +N ++I   A  + + +
Sbjct: 381 THGHDFGDKVLKQIALRLMRFRSRVSLLVRESSDEF-LFLTPLSNEVEIKRLAKRIIEVL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
           + P  +   +  +  SIG A +         +L++A+++MY AK +     + +  +   
Sbjct: 440 SQPYEVESAQFLLGCSIGVARFPEHGKDLDSLLRSADISMYKAKQQQNSYSIFTTEMQDA 499

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ +++ L +A+E   L++V+ P++R  DE I G+EAL++W   + G +    F+ +
Sbjct: 500 HLYKMKVEQRLRIAIEKQTLFMVFQPLVR-ADESIHGVEALVRWIDDELGFVPPDVFIPV 558

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +++ +  F++E     I           I + INI+ +        E +   + K
Sbjct: 559 AENTGLMQKLGTFIIESSIMQIAHLHRTT-EQKIGLSINISVRQFSHRSFSEHLFTTLEK 617

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              S S + L  +ES+ + + +  + +   L +  I ++LDDFGT  S LS L  +P D 
Sbjct: 618 YQLSASCLTLEITESLFIEDVDIVKPIFEALHEKNIKISLDDFGTGYSSLSMLKALPIDE 677

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      + +  ++++II + KN    ++A+ +        L   GCD +Q  
Sbjct: 678 LKIDKSFIENIAVDQQSLTMVQNIIAIGKNFGMVVLAEGVESNEHFAILKACGCDLMQGY 737

Query: 939 HVASPLGFNSILKLLK 954
           + + P+ ++ + K L 
Sbjct: 738 YFSRPIPYDELCKYLT 753


>gi|190893483|ref|YP_001980025.1| sensory box/GGDEF family protein (nitrogen fixation positive
           activator protein-like protein) [Rhizobium etli CIAT
           652]
 gi|190698762|gb|ACE92847.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like protein) [Rhizobium etli
           CIAT 652]
          Length = 737

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 108/448 (24%), Positives = 215/448 (47%), Gaps = 14/448 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K         A +D L+G+ NR      +   +  +         ++ +D+D +K++ND
Sbjct: 292 LKAEENSAREEALRDRLSGLSNRDGLGLAVDGFVAEA-RQSKRNVLLLYLDLDGFKEVND 350

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD ++ ++   +  L+    +LAR+ G+ F I  +S+  +      +  +   +
Sbjct: 351 SYGHGTGDQLIRAVAAGLQVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLSEQILDFM 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +  R + V ASIG A   +  I   E+++ ++LAMY AK  G   +  +  S   
Sbjct: 411 VEPLEIGRRVVVVGASIGIAMSPAGAIDREELVRRSDLAMYKAKEAGRARMTLYDPSMDA 470

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL +A+E+ +L L Y P++    + + G+EAL++W+ P  G +S   F+ 
Sbjct: 471 DREQRNALELDLRIAIESGDLTLAYQPLVDAATQALTGVEALVRWNRPGHGPVSPEVFIP 530

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   +I+++ LF+L +       W +      + + +N++     +    + ++ ++ 
Sbjct: 531 IAETSGLIESLGLFVLRKACETAKQWPE------LNVSVNVSPGQFRNPAFTDYVRYVLK 584

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T    SRI L  +E  ++ NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD
Sbjct: 585 QTEIEASRITLEITEGYMIQNPQRTRQSIERLKGLGVKVALDDFGSGFSSIGYLRQFGFD 644

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G  E +    +L++ + +A++++  + A+ I  E     +   GCD +Q 
Sbjct: 645 RIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEGQAVAMRLFGCDCLQG 704

Query: 938 SHVASPLGFNSILKL---LKERFPLVKN 962
                P+    I  +   L+   P  + 
Sbjct: 705 YLFGKPMVAEQITDMLNELRAAEPSTRR 732


>gi|327191523|gb|EGE58538.1| putative kinase/esterase protein [Rhizobium etli CNPAF512]
          Length = 790

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/457 (24%), Positives = 201/457 (43%), Gaps = 34/457 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+S       A  D LT +PNR  F  R    L  +      R  V ++D+D++K +N
Sbjct: 319 ELKRSELHARQLALHDVLTDLPNRALFAMRFEECLAET-RHSTERSAVALLDLDRFKAVN 377

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA-DFAIAMRK 639
           D  G A GD+++     RI  +L+  D LARL G+ F ++L    N  ++      A+  
Sbjct: 378 DTFGHAAGDELIRMAAERIRSVLRPGDTLARLGGDEFALLLRDIRNDDQVLLSICDAIVA 437

Query: 640 SIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  P  L   E    V  SIG      +  T+ ++++ A++A+Y AK  G      +  
Sbjct: 438 ELGRPFPLLRGEAVARVGGSIGLTIVPDAGRTADDLMRYADVALYEAKMGGRGQWRVYSP 497

Query: 698 SSFRSDRVM--IKEDLCL--------------------AVENSELYLVYHPIIRLMDEEI 735
           S          +K +L                        +   L + Y  + R      
Sbjct: 498 SMDGGRNARDILKNELREVLAKGTASSADSAQTGPGSTRPDFGSLEVYYQTVHRAEGGYA 557

Query: 736 V-GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             G EAL++W H + G ++ + F+  AEE  +I A+  ++L    +   +W +       
Sbjct: 558 ASGAEALVRWRHSQRGLLTPASFIPAAEEGGLIDALGFWVLRESCKAACNWPE-----DS 612

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           F+ +N++   L      E + A++ +T   PSR++L  +ES ++ +      +L  LR  
Sbjct: 613 FVAVNVSPAQLRRPNFAEEVIAVLEETGLPPSRLELELTESSLIEDNSDVYTVLKSLRSR 672

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           GI ++LDDFGT  S LS+L     D +K + S ++         AI+ +I+ +++N+  +
Sbjct: 673 GIQISLDDFGTGFSCLSHLVRFDIDRIKIDRSFVSQLGAKANGAAIIGAIVTLSRNLGIS 732

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             A+ +  E     LT +GC  +Q    + P+    +
Sbjct: 733 TTAEGVETEYQRDFLTALGCTDLQGYFFSKPVPLREL 769


>gi|254821533|ref|ZP_05226534.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 621

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/474 (23%), Positives = 206/474 (43%), Gaps = 14/474 (2%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                 W    I         +     +   +  +  + E +   A  D+LTG+ NR++ 
Sbjct: 141 KFGARRWKQEEI-------NTLEAVAALFAQLQARIVAEERLRYLAEHDDLTGVYNRRAL 193

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           +  L+  L            V  +D+D+ K IND LG + GD  +    +RI E    P 
Sbjct: 194 VAHLSGRLA---PGSPGPVAVFYLDLDRLKPINDYLGHSAGDWFIRVFAQRIEECAGTPS 250

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARL G+ F +I     +      FA  +   +   + +    I+ T SIG A  T   
Sbjct: 251 MIARLGGDEFVVIPDEPMSPEVAEAFARRLSTMLCDRLTIGGHVISRTVSIGLAVGTPGA 310

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
              +++L+ A+ A+  AK  GGN                  I+  L   +++  L L Y 
Sbjct: 311 DNCADLLRRADEAVLTAKRAGGNQTAVSTDDMSLKRAFRNDIELHLQGDIDSEGLLLHYL 370

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    IVG EAL++W HP WG +    F+ +AE   +   +  +++     +   W
Sbjct: 371 PEVDLWTGAIVGAEALVRWRHPVWGLLLPDSFIGVAESTNLAAELGGWVMRSACAEFSQW 430

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           R         + IN++   L+     EG+   I +     + + L  +E  V+ + + +R
Sbjct: 431 RAHGVGHGAMLRINVSPIQLISRGFVEGVADTIGEFGIDAASVCLEITERAVVHDIDTTR 490

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903
             L  L+++G+ + +DDFGT  ++LS+L  +P D +K +   +    +    +AI+R+II
Sbjct: 491 KTLSELKEVGVQVAIDDFGTGYAVLSHLKSLPVDMLKIDAGFVRDVGTDAGDLAIVRAII 550

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +A+     ++A+ +        L + GC   Q   ++ PL  +++  LL  R+
Sbjct: 551 GLAEAFGLEVVAEGVETPAAALTLMQHGCHRAQGFLLSRPLPGDAMEALLSARW 604


>gi|260186292|ref|ZP_05763766.1| hypothetical protein MtubCP_09722 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446949|ref|ZP_06436693.1| GGDEF protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419907|gb|EFD17108.1| GGDEF protein [Mycobacterium tuberculosis CPHL_A]
          Length = 623

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 8/450 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +  +  +   +   A  D+LTG+ NR++ L  L   L             + +D+D+
Sbjct: 167 FAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLA---PGQPGPVAALFLDLDR 223

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K IND LG A GD  +    +RIG+ L    ++ARL G+ F +I  S  ++      A 
Sbjct: 224 LKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAE 283

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +R  +   + +    +T T SIG AS T  + T S++L+ A+ A   AKH GG+ V  F
Sbjct: 284 RLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIF 343

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S  +   I+  L   +E+  L LVY P + L   +IVG EAL++W HP  G ++
Sbjct: 344 TADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLA 403

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE + +   ++ ++L R   +   W+         + IN+++  L+     + 
Sbjct: 404 PGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDALLRINVSAGQLVTGGFVDF 463

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I +     S + L  +E+VV+ +   +R  L RL+++G+ + +DDFGT  S +S L
Sbjct: 464 VADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLL 523

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K + + +   G+    + I+R I+ +A+  +  ++A+ +  E   + L    
Sbjct: 524 QTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQR 583

Query: 932 CDYIQDSHVASPLGFNSILKLL-KERFPLV 960
           C   Q    + P+   ++  +L   R P  
Sbjct: 584 CYRAQGFLFSRPVPGEAMRHMLSARRLPPT 613


>gi|229917926|ref|YP_002886572.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Exiguobacterium sp. AT1b]
 gi|229469355|gb|ACQ71127.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Exiguobacterium sp. AT1b]
          Length = 782

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/788 (17%), Positives = 294/788 (37%), Gaps = 57/788 (7%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV-------NLP 246
           +++         L    +  R +  + T    W++ G  ++  G  S          +L 
Sbjct: 16  MMLAFLIASVSALMALELAKRVTGDVTTSHRIWILFGGTTLGLGIWSMHFVAMLGHASLH 75

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC-----IAILFCMSF 301
                IW     +  + +  I  F  +        +   +              +  +  
Sbjct: 76  ESTYSIWLIIGSMIPAIAGCILSFGLISHKTTWMILLQSSGLMGFGIVSMHYIGMAAIQS 135

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA--WILIFIWFIGLWMAIT 359
                  S   +++          +       Y      +P      + +      M + 
Sbjct: 136 VQLDFDPSWVLVSIGIAWGASFLALWVGFFSSYSTERTPVPVKLMFSLLMGTAIFSMHLA 195

Query: 360 KRLDNDIIQPALVG--------GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
                 II  A            L  +V  I F +           + I      Q+  +
Sbjct: 196 GMRATTIIPDASAAKQVPIDPTLLAWLVTSIVFLLFGMYFIAYTLERQIQKRDLFQTTIL 255

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             + D V       +        A +              +    H              
Sbjct: 256 ESTTDAVVTTTSDGEIQYQNQAFAHLF------EGHATEPFFQDYHP------------- 296

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +   +       ++   D     + +   P+   +G   + +    D+TE   S   I  
Sbjct: 297 LLSAQQPFYQPVQI---DTNHRTLEVTSYPL--QDGSNNQVLWFIRDVTEAVASQRLIEH 351

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            AF D LT +PNR      L   +             + ID+++++ ++D+LG    D++
Sbjct: 352 MAFHDALTDLPNRHKLDALLKECISQER-----SVACLYIDVNRWRFLSDILGHHGADEL 406

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           ++ +  R+   +   D+L R+  + F I+L ++ +       A    K+I+   ++    
Sbjct: 407 IIQVADRLKHTIHPDDVLTRIGPSEFVILLFAQRS-SLAHQKAEKCIKAISSSFDVDGTT 465

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKE 709
           + +T S G + +     +S E+++ + LA   ++  G N+++ F           + I++
Sbjct: 466 LELTMSAGISHFPKDSASSEELIQFSRLAADESRQDGENNIKLFEESSRPQLLRNMEIEK 525

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+ N EL LVY P I L    + G+EAL++W HP+ G I+ S+F+ IAE   +I +
Sbjct: 526 ALVTALSNDELTLVYQPKIDLKRNRLEGVEALLRWQHPQIGKIAPSDFIPIAENTGLIHS 585

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++    R  + W+      P  + +N++       +  + +Q+++ +T   P  ++
Sbjct: 586 IGHWVIREGCRTWVRWQRTGIR-PFTLSLNVSPLQFAREDFVDTLQSILLETGMDPMYLE 644

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES ++     +R  L +L ++GI ++LDDFGT  S  S L  +P   +K + + + 
Sbjct: 645 LEVTESSMLSYEASTREKLTQLHQLGILISLDDFGTGYSSFSQLRELPVQVLKIDRTFIE 704

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                  + AI+RS+I +  N+   ++ + +     ++ L +  CD++Q  + + PL   
Sbjct: 705 NLFTDRNQEAIVRSMIQLGHNLGMKVLMEGVETSAQLEWLLKESCDFVQGYYFSRPLAET 764

Query: 948 SILKLLKE 955
            +   +K+
Sbjct: 765 DVPLHVKQ 772


>gi|209522707|ref|ZP_03271265.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496756|gb|EDZ97053.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 580

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 216/424 (50%), Gaps = 6/424 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNR +  DR   IL+   + D+    ++ + +D++K+IND+LG    + +L ++
Sbjct: 150 DGITNLPNRLALRDRFEQILENLPSYDSGLIPIVCLSVDRFKRINDILGYESAEALLKAV 209

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ + +     +A L+   F II     +  ++ + A  +R ++A P+ +   EI + 
Sbjct: 210 GERLVKAMDNQGTVAYLTSGEFAIIGEFTGSENQVHEQAQLLRDAVAEPLLIRGHEIVIM 269

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
           +S+G A +         +LKN+++A+  ++  GGN    +R S      D + ++ DL  
Sbjct: 270 SSMGIALYPLHGQEIDSLLKNSQIALNSSRSYGGNRCTVYRDSLQVISADSLALEADLQK 329

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +EL L Y P + L   +IVG EAL++W+    G +  + F+ +AEE  +I+A+  +
Sbjct: 330 AIARNELQLYYQPKVCLKTGKIVGAEALLRWNRRNNGLVPPALFIPLAEETGLIQALGEW 389

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++     I +W +   +  I + IN+++      + C  ++ ++      P+ ++L  +
Sbjct: 390 VVKTACNQIKNWANLGLL--IPVAINVSADQFNHPDFCHHLREILQSEGVDPAYLELELT 447

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           ES+++ N E S   L  L  +G+ + +DDFGT  S L+YL    FDT+K +   +     
Sbjct: 448 ESILVKNEELSIRKLKELNSLGLKIAIDDFGTGYSSLNYLNKFRFDTLKLDRCFVKDVDK 507

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             K  AI++++  M K +   ++A+ +  E ++  +    CD IQ    + PL       
Sbjct: 508 NPKTQAIVKAVTMMTKQLNLKVVAEGVQTEEELAFIYDNLCDEIQGYIFSPPLTAAQFEG 567

Query: 952 LLKE 955
           LLK 
Sbjct: 568 LLKS 571


>gi|152966403|ref|YP_001362187.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360920|gb|ABS03923.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 683

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/479 (26%), Positives = 231/479 (48%), Gaps = 35/479 (7%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + WM+I         G +L        +T  + + +  L    +D LTG+ NR    + L
Sbjct: 164 WRWMMIHA-------GFVLAASATH--LTSWRLNEQQGL----RDALTGLANRTQLSEFL 210

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
           T +L            V+ +D+D +K +ND  G A GD +L+++  R+   ++  D++AR
Sbjct: 211 TRVLSRRDQ-----VGVLFVDLDDFKNVNDSRGHAAGDQLLLAVAERLRACVRGSDLVAR 265

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT------S 665
           L G+ F +++                  S+A P+++  + I V AS+G A         S
Sbjct: 266 LGGDEFAVVIHGGAAP--ARRVGERFLASLAQPVDVDGQPIHVHASLGTADTATLCGTLS 323

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLV 723
              T++E+L+NA+LAMY AK  G N + ++   +S    D+  ++EDL  A++  +L + 
Sbjct: 324 ELDTATELLRNADLAMYWAKAAGKNRLVAYSPGMSQAAHDKASLREDLTHALDAGQLEVH 383

Query: 724 YHPIIRLMDE----EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           Y   +    +    +  G EAL++W HP+ G +   EF+ +AE    I AI  ++L    
Sbjct: 384 YQATVDFRKDNGLAQPKGYEALLRWHHPERGTVPPLEFIPLAEASGDILAIGAWVLRTAT 443

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
               +W  +    P+ + +N+++  L  +++   ++  + ++   P ++ L  +ESV++ 
Sbjct: 444 AQAATWSAERGY-PVSVAVNLSAVQLASDDILHTVREALRESGLRPHQLTLEVTESVLVD 502

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-- 897
           + E     L +LR  G+ + +DDFGT  S LSYL  +P DTVK + S +T       A  
Sbjct: 503 DLEAVSARLAQLRATGVLVAIDDFGTGYSSLSYLRRLPVDTVKIDQSFITDLAHGGSATT 562

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++ SII +A+++   ++A+ +  E   + L  + C Y Q    A P     +   + + 
Sbjct: 563 LVASIIELARSLGLDVVAEGVETEQQAQVLRELSCTYAQGYLYARPQPAREVASHVPDH 621


>gi|237799010|ref|ZP_04587471.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021864|gb|EGI01921.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 779

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/582 (20%), Positives = 246/582 (42%), Gaps = 16/582 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R   +++    +   +++++L    V + +     F+  +  + ER  + +   GD V  
Sbjct: 201 RFILNLLIAVNLVTAIVLIVLALMRVRRLIAQRRLFADALQLEKERAQITLESIGDGVIT 260

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGR 478
            D+    V   P    +    S    G P+      +  +D+ +  T++D     R +G 
Sbjct: 261 IDVAGAIVYMNPAAEGLTHWKSSQASGLPLAALFNLLDEHDQKDSSTLIDQIASGRLKGG 320

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
                 ++  D     + +   P+  S G I   + + +D+T++++ +  +   A  D L
Sbjct: 321 SASSKLIQRLDGSTVSVALVGTPIHTS-GVISGAVLVLHDMTQERQYIAELSWQAAHDPL 379

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F  RL  +LD           +M +D+D++K +ND  G A GD++L  L + 
Sbjct: 380 TGLVNRSEFERRLQQVLDERGDGSGTHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCQA 438

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + + L+  D LARL G+ FG++L+    + K  D A A+R+ +         R    T S
Sbjct: 439 LPQGLRDSDTLARLGGDEFGVLLVDCP-ASKANDIAEALREIVQSLHFMWKGRPFMTTVS 497

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCL 713
           IG        +T    L  A++A Y AK +G N V+ + V       R   +   + L +
Sbjct: 498 IGLVHLGDVPVTLEASLSAADMACYMAKEKGRNRVQVYSVDDLKLSMRFGEMAWIQRLHM 557

Query: 714 AVENSELYLVYHPI--IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A++ +   L    I  +     E+  +E L++        +    F+  AE   ++  ++
Sbjct: 558 AMDENRFCLYAQEIAAMSGEGNEVRHIEILLRLRDESGRMVVPDSFIPAAERYGLMTTLD 617

Query: 772 LFMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            ++++ + + I   +  D+   P     IN++   + D+   E ++        +P  I 
Sbjct: 618 RWVVQNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLKHQFVAFDVAPEMIC 677

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS + 
Sbjct: 678 FEITETSAIADLQSAIRFINELKSLGCRFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVK 737

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
                    A++  I  +   +    IA+ +        L  
Sbjct: 738 DMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIESALLE 779


>gi|254514218|ref|ZP_05126279.1| ggdef domain/eal domain protein [gamma proteobacterium NOR5-3]
 gi|219676461|gb|EED32826.1| ggdef domain/eal domain protein [gamma proteobacterium NOR5-3]
          Length = 398

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 203/391 (51%), Gaps = 5/391 (1%)

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M ID+D +K +NDVLG +VGD +L     R+   L+  D+LAR+ G+ F  +L    ++ 
Sbjct: 1   MFIDLDHFKDVNDVLGHSVGDLLLQEAATRLLAALREGDLLARVGGDEFVAMLPGIESAQ 60

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             +  A  +  ++  P  + E EI V+ASIG   +         +L+NA+ AMY AK  G
Sbjct: 61  NASVIATKILDTLKTPFFINEEEILVSASIGICCYPQDGQDVESLLRNADTAMYEAKSAG 120

Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                 +  +   + R  ++    L  A+++ EL +VY P      E++ G EAL++W+H
Sbjct: 121 RGTWRCYSRAMTVAARRHMELLYALRQAIDHGELSVVYQPKYDARTEKLSGFEALLRWEH 180

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK+G +++ EF+ +AE+  +I  ++ ++L+++   I  WR     PP  I +N+++  L 
Sbjct: 181 PKFGAVNTHEFITVAEQGGVIDDLDYWVLKQVCEQISDWRRNGLSPP-TIAVNVSAATLH 239

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D +    +   + +   +   I+L  +E+ ++ + +R    L ++R +G+ +++DDFGT 
Sbjct: 240 DRDFVTTVSQTLQEQKIAKDWIQLELTETALLPSFDRPDSALNQIRALGLGISIDDFGTG 299

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL  +P   +K + S +      R A  I  +I  MA+++E  ++A+ +     +
Sbjct: 300 YSSLSYLRKLPVTELKIDASFVRDIATDRDAATIAETIFAMARSLELNVVAEGVETAEQL 359

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             L  +G   IQ  + + PL       LL +
Sbjct: 360 AFLRNLGPLQIQGFYFSKPLSARDTQILLAD 390


>gi|84387517|ref|ZP_00990535.1| hypothetical protein V12B01_11050 [Vibrio splendidus 12B01]
 gi|84377565|gb|EAP94430.1| hypothetical protein V12B01_11050 [Vibrio splendidus 12B01]
          Length = 611

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/536 (23%), Positives = 236/536 (44%), Gaps = 31/536 (5%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GR 478
           +D   + V+         G    ++   + +          +     L +    R     
Sbjct: 92  FDNSGNVVSANSAFFQNYGSPFSTLSDFVSSE---------ETAAQWLFAARKGREILEE 142

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           +  E      DN+ H   ++ + + + +  +L         T+QK+ L     NA  D L
Sbjct: 143 VSCEI-----DNKTHHFDVQGKWLFDKSELLLNLTCT----TKQKEKLIKARYNAEHDCL 193

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T + NR+   + L T +            +M +D+D +K +ND  G +VGD +L  +  R
Sbjct: 194 TELYNRRGITNLLETSIAY-----RSPFELMFVDLDGFKLVNDTYGHSVGDQLLKQVGER 248

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTAS 657
           +  L+    ++ R  G+ F +I  +  N   I      + +++    ++     ++V  S
Sbjct: 249 LKHLVDETCMIGRFGGDEFIVIAHACRN-HNIPLLCSRIIEALNKSFHIRGIGTLSVGCS 307

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAV 715
           IG A +  + +    +LK A +AM+ AK  G N  ++F     ++      I+  L  A+
Sbjct: 308 IGTAHFPDNAVDQESLLKQAGMAMHMAKANGRNRFQTFTPCLAQTLHRKVEIRHRLTHAL 367

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           EN +L L Y PI+    +++ G EAL++W   + G+I+  EF+ +AEE   I  +  ++L
Sbjct: 368 ENDDLNLHYQPIMNTNSDKVKGFEALLRWSDEELGDIAPDEFISLAEESGQIVPLGKWVL 427

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               + +  W+ + +   + + INI+S   +     E + A+++     P  + L  +ES
Sbjct: 428 NSALKQLSMWQREFDNE-LMMSINISSIQ-MHATFAEQLSAMLNFYNIQPQSVALEITES 485

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
            ++      R  L  + K+G+ L LDDFGT  S LS L  +P  TVK + S + GS +  
Sbjct: 486 SMIFKHGEVRQALSDISKLGVELHLDDFGTGYSSLSMLHDLPISTVKLDKSFVHGSHKGS 545

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            AI+++   +   +   ++A+ +  E     L   G  Y+Q    + P+  N + +
Sbjct: 546 KAIVQATHAICDKLGLKVVAEGVETETQKAFLIDCGYQYLQGFLFSKPIPSNEVER 601


>gi|159039053|ref|YP_001538306.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
 gi|157917888|gb|ABV99315.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
          Length = 594

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 205/439 (46%), Gaps = 10/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S       A  D LT +PNR  F +RLT  ++    D + R  +  +D+D++K++N
Sbjct: 159 ALRASEARFRHQATHDPLTDLPNRNLFTERLTAAVEAPERDTD-RVGLCFLDLDQFKRVN 217

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL ++  R+ E L    ++ARL G+ F +++     +  +   A A   +
Sbjct: 218 DQYGHRAGDRVLTAVATRLREALSGH-LVARLGGDAFVVLIERTGGTRDVIAVAEAALAA 276

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVS 698
           I  P  +   E+ V  SIG      +  +++E+++ A+  ++ AK  G     +      
Sbjct: 277 IHEPAVVAGTEVAVRTSIGIVERKVAGTSANELMRAADCTLHWAKAAGGGRWMIYDPERD 336

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  +   +   ++  E YL Y P+  L D  ++G+EAL++W HP+ G +   +F+
Sbjct: 337 RRELTRQALTAAIPTGLDRGEFYLDYQPLTSLRDGRLLGVEALVRWRHPELGVLRPDQFI 396

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  ++L    R   SW      P  F+ +N+A + +    L   ++ L+
Sbjct: 397 GLAEETGLIVPLGGWVLAEACRVAGSWSGTGGEP--FVSVNLAVRQVHRPGLVRDVRDLL 454

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P R++L  +ES +M   E     L  L  +G+ + +DDFGT  S L+YL  +P 
Sbjct: 455 RHTGLPPERLQLEITESAMMSPAEEPVRALRMLADLGVRIAIDDFGTGYSNLAYLRDLPV 514

Query: 879 DTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             +K  G  + G      +    IL S++ +A  +  T+ A+ +      + L  +GCD 
Sbjct: 515 TELKVAGEFVAGLRASEPQADERILASLVSLAHALNLTVTAEGVETAGQAERLRAIGCDA 574

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q  H   P   + IL  +
Sbjct: 575 GQGWHFGRPEPADRILARM 593


>gi|157373582|ref|YP_001472182.1| sensory box protein [Shewanella sediminis HAW-EB3]
 gi|157315956|gb|ABV35054.1| sensory box protein [Shewanella sediminis HAW-EB3]
          Length = 870

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/578 (20%), Positives = 234/578 (40%), Gaps = 19/578 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++            IF   ER    +    + V   DI    V   P    +LG+   S 
Sbjct: 290 LVIMAERVNTLLARIFQQKERFKTTLESIAEAVILTDIGAKVVYLNPQAERLLGVKGESA 349

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     +  +   D+     + +      +  +  + +++   ++   +   I  + N 
Sbjct: 350 IGVS---VDSLVKTDKSIKDDLFEFMFSQAQQPVLSKLKLKT--DKTRILERSISNLLNQ 404

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              ++  + +  DIT ++     +   A  D++T + NR++F +RL        + D   
Sbjct: 405 QRIVIGTVIVLRDITREELLKRQLRQKANFDSITSLLNRRAFEERLEKF-----SHDAQS 459

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +   D++++K IND  G + GD +L  + + +   L   ++LARL G+ FG+ +   N
Sbjct: 460 IAICYFDLEQFKLINDSCGHSAGDTMLAMVAKAMQSCLSKDEMLARLGGDEFGLAIRDHN 519

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            S         +       +        V  S G A   +  I+  E++K+A++A   AK
Sbjct: 520 ASEVAQLVKRIVSSVSMQVLRDNGCHYKVGVSAGVAIARAPYISPKELIKDADVACIAAK 579

Query: 686 HRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEA 740
            +G N V  +  +   S            +  A+E++EL L Y PI  +   E    +E 
Sbjct: 580 RKGSNQVHFYDDNDKESIYQRNAPMWAVRIGQAIEHNELLLYYQPIKGMGPGEHKQRMEI 639

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++   P    +S ++F+  AE   ++  ++  ++ +    +    +  +     I IN+
Sbjct: 640 LLRIQEPCGRILSPAQFIEAAERFKLMNDVDKEVIRKAFLWLSLHEEIWDDH--CISINL 697

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L    + E +     +       I    +E+  + N  R+  +L  LRK+G S  L
Sbjct: 698 SGNSLGAEGMVEYIAEQFKRFEIPSKCICFEITETSAIQNRNRAMDMLNYLRKLGFSFAL 757

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  +   YL  +P D VK +G  +       K  AI++SI  +   +    +A+ +
Sbjct: 758 DDFGTGFASYGYLKELPVDYVKIDGCFVKSLATNAKDFAIVKSIHDVCDVMGIETVAEFV 817

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  I  L  +G +Y Q   +  P    + ++L + R
Sbjct: 818 ENQDIIDRLEDIGINYAQGYAIGRPKPLETYIELRRSR 855


>gi|229588879|ref|YP_002870998.1| putative signaling GGDEF/EAL domain-containing membrane protein
           [Pseudomonas fluorescens SBW25]
 gi|229360745|emb|CAY47603.1| putative signalling GGDEF/EAL domain membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 759

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 237/450 (52%), Gaps = 12/450 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E  ++   +   A  D LT + NR+ F       L   A  + +   V+ +DID +K+
Sbjct: 281 LSELDQARASLQQVAHYDALTSLLNRRGFNQIFAEKLAEKAASNGM-MAVIFLDIDHFKR 339

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAM 637
           IND LG   GD +L  L   I   ++   D++AR  G+ F  ILIS ++  +    A  +
Sbjct: 340 INDSLGHDAGDQLLTVLAAHIKGSVRSHADVVARFGGDEF-CILISIHHRDEARHLAQRI 398

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +  PI L  R + +T SIG + +    +T  E+LK A+LA+Y +K  G N +  F  
Sbjct: 399 MQKMKEPIELAGRRMVMTTSIGISLYPDDGLTCEELLKTADLALYQSKDAGRNSLNFFSS 458

Query: 698 S--SFRSDRVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           +  +     + ++E+L  A+   ++L L Y PI  +   ++  LEAL++W HP+ G ++ 
Sbjct: 459 NLKTRAFLELQLEEELRGALRTRNQLVLFYQPIFDMKLGKVTRLEALVRWQHPQHGLLAP 518

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   +I  ++ ++L +   D+    D+     + + +N ++ +L  +EL + +
Sbjct: 519 DRFIGIAESNGLIAELDHWVLRQACHDLSLLSDR-GYTELTMAVNCSALNLARDELADEI 577

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  +  +  + +R++L  +E+ +MGN   +  LL ++R +G+SL +DDFGT  S L+YL 
Sbjct: 578 EDALRFSAIAANRLELEVTENALMGNISSTLALLRQIRALGVSLAIDDFGTGYSSLAYLK 637

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P +T+K + S +     +   I I+++II MA  +   ++ + +  +   + L + GC
Sbjct: 638 RLPLNTLKIDRSFIQDIPKSTADIEIVQAIIGMAHTLHLEVVTEGVETQAQFELLLKHGC 697

Query: 933 DYIQDSHVASPLGFNSILKLLKE---RFPL 959
           D++Q   ++  +  + I+ +++    R PL
Sbjct: 698 DFVQGYLLSPAVPASDIIGVMQGINLRNPL 727


>gi|145595796|ref|YP_001160093.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145305133|gb|ABP55715.1| diguanylate cyclase/phosphodiesterase [Salinispora tropica CNB-440]
          Length = 585

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 209/439 (47%), Gaps = 10/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S       A  D+LT +PNR  F +RLT  L     D + R  +  +D+D++K++N
Sbjct: 150 ALRASEARFRHQATHDSLTDLPNRNLFTERLTAALAAPQRDTD-RVGLCFLDLDQFKRVN 208

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL  +  R+ + L    ++ARL G+ F I++     +  +   A A   +
Sbjct: 209 DQYGHQTGDRVLTDVANRLRQALTGH-LVARLGGDAFVILIERTGGTRDVIAVAEAALAA 267

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +   E+TV  SIG A    +  +++E+++ A+  ++ AK  GG     +     
Sbjct: 268 VHEPATVAGHEVTVRTSIGIAERQVADASANELMRAADCTLHWAKAAGGGQWMLYDAERD 327

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R    R  +   +   ++  E YL Y P+  L D  ++G+EAL++W HP+ G +    F+
Sbjct: 328 RRELTRQALTAAIPAGLDRGEFYLDYQPLTSLRDGRLLGVEALVRWRHPELGVLRPGRFI 387

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  ++L    R   SW      P  F+ +N+A + +    L + ++ L+
Sbjct: 388 GLAEETGLIVPLGGWVLAEACRTAGSWSVTGGTP--FVSVNLAVRQVHRPGLVQEVRTLL 445

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P R++L  +ES +M   +     L  L  +G+ + +DDFGT  S L+YL  +P 
Sbjct: 446 RHTGLPPERLQLEITESAMMSPADEPVRALRHLADLGVRIAIDDFGTGYSNLAYLRDLPV 505

Query: 879 DTVKFNGSLMTGST----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             +K  G  + G      +    I+ S++ +A  ++ T+ A+ +      + L  +GCD 
Sbjct: 506 TELKVAGEFVAGLRTQEPQADERIVASLVSLAHALDLTVTAEGVETAGQAERLRAIGCDA 565

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q  H   P   + IL  L
Sbjct: 566 AQGWHFGRPEPADRILARL 584


>gi|217424302|ref|ZP_03455801.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 576]
 gi|217392767|gb|EEC32790.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 576]
          Length = 872

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 242/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 644

Query: 725 HPI--IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI             E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTCPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 866


>gi|158335457|ref|YP_001516629.1| sensory box/response regulator [Acaryochloris marina MBIC11017]
 gi|158305698|gb|ABW27315.1| sensory box/response regulator, putative [Acaryochloris marina
           MBIC11017]
          Length = 572

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 110/429 (25%), Positives = 211/429 (49%), Gaps = 10/429 (2%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             + D+LT +PNR+   ++    +       +    ++++ ID+++ I   LG A  D +
Sbjct: 143 LTYYDHLTQLPNRRLLEEQFQH-IQAEKQIADTLDALVLVGIDRFEWIKSTLGAAFSDQL 201

Query: 592 LVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           + ++T+++       +     +AR+  ++F II  +  +   +  FA  +   +A P  +
Sbjct: 202 VQAITQQLSAHRYMGNYAMAMVARIEADQFAIIPRNIKSRPDLDQFAKQILDILATPFYV 261

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RV 705
           +++E+ +T SIG   +         ++ NAE+AMY +K + G   E +  +        +
Sbjct: 262 VDQELCITPSIGMTCYPKGSTDIGTLISNAEIAMYQSKQQVGPSAEFYLPTMRSQCSQTL 321

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +   L  A++ +EL L Y P I L   ++VG EAL++W HP+WG +S + F+ IAEE  
Sbjct: 322 TMAARLRHALDKNELRLYYQPHIDLQTSQVVGAEALLRWHHPEWGVLSPNVFIPIAEETD 381

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++L      +  W+      P+ +L+N++ + L+   L   +  ++S     P
Sbjct: 382 LILDIGEWVLRTSCLQVKRWQQTCGR-PLQMLVNLSPRQLIQPALPPMLHEILSGNALEP 440

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + + L  +ES +M +P+ +  ++ +++  GI L++DDFGT  S LSYL   P D +K + 
Sbjct: 441 NSLVLELTESTLMQDPDLALKVMHQIKATGIRLSIDDFGTGYSSLSYLQRFPLDILKIDR 500

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +          AI  +II M   +  ++I + +    + K L    CD IQ   ++ P
Sbjct: 501 GFIHEINRQPTNAAITTAIIQMGHKLGLSLIGEGVETLAERKFLLDHQCDGIQGYLISPP 560

Query: 944 LGFNSILKL 952
           L    +LK 
Sbjct: 561 LPAAELLKY 569


>gi|240138878|ref|YP_002963353.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL
           motifs) [Methylobacterium extorquens AM1]
 gi|240008850|gb|ACS40076.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL
           motifs) [Methylobacterium extorquens AM1]
          Length = 649

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 208/438 (47%), Gaps = 9/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  E     A  D+LTG+PNR+ F  RL  ++  ++   N    + + D+D++K IN
Sbjct: 209 EAQRLGEENQRLAHTDSLTGLPNRRYFFQRLDALIA-ASATGNAAFALAIFDLDRFKPIN 267

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL    RR+         +ARL G+ FG+++ + + +    +    +  +
Sbjct: 268 DTFGHTAGDRVLEETGRRLSAFAADGVTIARLGGDEFGVLIHAADRTADAVELCNRICTA 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI+L E ++    S G A + S+   +  +   A+ A+YH+K R       F     
Sbjct: 328 LHAPISLGETQVVPGCSGGLALYPSAGRAADALFDRADYALYHSKERKRGTTTLFSQEHE 387

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + R    ++  L  A   +E+ + Y PI+  + + I  +EAL +W  PK G +    F+
Sbjct: 388 DAIRAERAVEAALQSADLAAEMEMHYQPILDTVTDRITTVEALARWTSPKLGRVPPDRFI 447

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   MI ++ L +L +   D     D      I +  N++S DL   E    + A +
Sbjct: 448 AVAERCGMIHSVTLLLLRKALADAARLPD-----DIGLSFNLSSHDLASPETVIAILAAV 502

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P RI L  +E+ +M + E ++  +  LR +GI + LDDFGT  S L+Y+  +P 
Sbjct: 503 RQSGLDPRRITLELTETALMRDFEGAQKAITLLRALGIKIALDDFGTGYSSLNYVHRLPL 562

Query: 879 DTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +   M         +++ +I+ + +N+    IA+ I     +  + R GC Y+Q 
Sbjct: 563 DRIKIDRGFMADVESDLGRSVVITILDLCQNLGLDGIAEGIETTEQLSAVRRHGCRYVQG 622

Query: 938 SHVASPLGFNSILKLLKE 955
             +  P+    +L  L+ 
Sbjct: 623 YLIGVPMPMTDLLGGLRR 640


>gi|239944494|ref|ZP_04696431.1| putative integral membrane phosphodiesterase [Streptomyces
           roseosporus NRRL 15998]
          Length = 940

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/784 (18%), Positives = 314/784 (40%), Gaps = 42/784 (5%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           +I G    LA  L + +  + + +   + A A + L Y  +D   +S ++ L      + 
Sbjct: 151 LIGGSLLTLAWSLALAHTAHMAGVQDTSVAPAALSLAYPLLDIVLVSMVLALHFRRAGVN 210

Query: 254 RACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           R+    A+++  +  L   +  +   R     G +  +G    ++L   + +     A  
Sbjct: 211 RSAVNTAIAALALTVLSDAVFTSPLLRSTYHSGQLLDAGWFAGSLLLAYAPWGARRGARR 270

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
                    +                   L P           L+  +  R  + ++   
Sbjct: 271 PARPGPPRAIASRPIAGSLAA--------LTPYLAAAVCTLGILYNVVDGRRVDRVVI-- 320

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
             G  V++ +++   ++  +L     +Q +          V GS D++            
Sbjct: 321 FTGCTVVLALVVRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPNGTLRYV 378

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRA 487
           +P  A + G  +  + G        IH  D       +  F+    +     + E R R+
Sbjct: 379 SPAAAGVYGRDAEDLVG--AELSSIIHPEDLGRVVHEVRRFLAAPPHEEPTTRIECRFRS 436

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +  +   +             +  + D+TE+ +    +  NA  D LT +PNR  F
Sbjct: 437 GAGDWLNVESTVNRHQG------GLLLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALF 490

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R+   L       +L   V+ ID+D +K++ND +G   GD++L+   RR+ E ++  D
Sbjct: 491 TARVRQALG-GRRAGDLGTAVLFIDLDGFKQVNDTIGHQAGDELLIQAGRRLQESVRAGD 549

Query: 608 ILARLSGNRFGIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             ARL G+ F  +++ +          ++ + A  +R +++ P  +   E+ V ASIG A
Sbjct: 550 TAARLGGDEFAALIMGDGTRDQGAREYQVHEIADRLRLTLSQPYRIGASEVRVAASIGVA 609

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +    IT +++++NA+LAMY AK  G + VE +             +   L  A+ + E
Sbjct: 610 -FAEPAITPTDLMRNADLAMYRAKAGGKDRVELYAPQMQADVVRRSELATRLRTALRDGE 668

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L++ P++ L    +  + A  +W   +    + +EF+ ++ +      +  ++LE   
Sbjct: 669 FALLHQPVVHLASGSVAAVAAQARWRSAQGILFTPAEFLRVSGDDDRTAELGRWLLEEAV 728

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVM 838
                     +  P+ + + +++  LLD       ++AL+++       + +  ++S   
Sbjct: 729 AQAADRARAGH--PVSVSVRLSAARLLDAAPPPGSVEALLTRHGLPSGALMIEVADSDPR 786

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            + +     L  LR++G+ + LD FG+  + ++ L  +P D +K + +L+ G  E     
Sbjct: 787 VSFDALEQRLVALRRLGVRIALDGFGSGFAAINALRRLPIDVLKLDRNLVEGVVESARLH 846

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
            I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    + + L++ 
Sbjct: 847 KITSGLLRIACDLGLQSVADGVDVPEQVLALRAMGCTHGQGMAFSGPLDEYRLRRALVRG 906

Query: 956 RFPL 959
            FP+
Sbjct: 907 EFPV 910


>gi|226356672|ref|YP_002786412.1| c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115]
 gi|226318662|gb|ACO46658.1| putative c-di-GMP phosphodiesterase A [Deinococcus deserti VCD115]
          Length = 821

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 123/519 (23%), Positives = 238/519 (45%), Gaps = 29/519 (5%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +           H    +     L +  + ++   L  + ++         +  R     
Sbjct: 310 LEARGDYQRALWHARQHEAIERSLHADVLKHKTQVLAAQLQLER-------LEHRAAEER 362

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             N ++             +++ E +   A  D LTG+ NR +F   L   +        
Sbjct: 363 LRNIELAHANE------ALQEAQERLAYQAGHDALTGLMNRAAFEATLEAAV----LGTQ 412

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ ID+D +K++ND LG  VGD +LV + +R+ + ++  D++AR  G+ F ++L +
Sbjct: 413 DALGVLFIDLDHFKQVNDTLGHPVGDALLVQVAQRLLQCVRDHDLVARQGGDEFTVLLRN 472

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  + +++++P+ L  R++TVTASIG A +       + + KNA+LAMY 
Sbjct: 473 VQEHEAAERAAQRILEALSVPVELAGRQLTVTASIGIALFPQDGTDVTTLQKNADLAMYL 532

Query: 684 AKHRGGNHVESFRV-SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           AK    +        S+  ++R+  ++ L  A+ + +L L Y PI+       V +EAL+
Sbjct: 533 AKRERRSVRRFEPGLSAAAAERLDFEQALRAAISSEQLRLHYQPIVSSGTLSPVAVEALV 592

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +    F+ +AEE  +I  +  ++L    R I  WR     P + + +N+A 
Sbjct: 593 RWQHPTLGLLPPGRFVPMAEETDLILHLGAWVLNEACRQIKVWR--GRWPDLRVSVNVAP 650

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + +   +    ++  +     SPS + L  +ES VM + +        L   G+ + +DD
Sbjct: 651 RQITQPDFVVFVEQTLRTHGLSPSALDLEVTESEVMDDED--LQQYEALLSAGLRIAIDD 708

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS---TEKRIA---ILRSIIPMAKNIETTIIAK 916
           FGT  S +S L  +P   +K + SL+TG         +   ++R+++ +A+     ++A+
Sbjct: 709 FGTGYSSMSRLFRMPTQILKIDRSLITGLVEPGPGGRSTLPLVRAMVAVARESGWQVVAE 768

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     ++EL ++ CD++Q   +A P+G     + L+ 
Sbjct: 769 GVEHSDQLRELRKLNCDHVQGYLMARPVGPAETERWLQA 807


>gi|89093357|ref|ZP_01166306.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
 gi|89082336|gb|EAR61559.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
          Length = 582

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 215/438 (49%), Gaps = 18/438 (4%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
              + D LTG+PN++  L+RL+  L           +V+ I + +++KI +  G  VG+ 
Sbjct: 136 QLTYYDALTGLPNKKLCLERLSKALTSFKGRHGF-LSVLNIRLGQFRKITESYGPKVGET 194

Query: 591 VLVSLTRRIGELLKFPDIL------------ARLSGNRFGIILISENNSLKIADFAIAMR 638
           +L S++ R+ E ++  D++            A L G+ F I+L    N+   +     + 
Sbjct: 195 LLKSVSDRLLECVRSSDVVSHGGDSDPTRVTAHLGGDEFSILLTRIENNGDASYVGERLV 254

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA--MYHAKHRGGNHVESFR 696
           K+   P+ +  ++  +  SIG + +         +L  A  +  +       G    S  
Sbjct: 255 KAFEKPLTVNGQDFFIPLSIGISIFPGDGDQPEILLSKASSSADLLIDNQESGYQFYSDE 314

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +    +++ +++DL  A+ N + +LVY P +  + + + G EAL++W HP+ G +S + 
Sbjct: 315 ANKHLKEKLELQQDLRKALGNGQFHLVYQPQVDGIAKRVCGAEALLRWTHPEKGFVSPAV 374

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  ++  I   +L    +  + W+ Q  +  + I +NI+ K     +    +++
Sbjct: 375 FIPLAEESGLMVEIGTCVLREACKQSVIWKSQ-GVEKLTISVNISGKQFRSEDFLGTVKS 433

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T   P  I L  +ES+ M + +++  LL  LR +G+ +++DDFGT  S LSYL   
Sbjct: 434 VLAETQAVPEMIMLEITESLAMSDVDKTVELLADLRALGLEVSVDDFGTGYSSLSYLKDF 493

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + + + G    +   AI  +I+ MAK +   I+A+ +     +  L  +GCD 
Sbjct: 494 PIDELKIDKAFVDGLPNNKGDQAIASAIVTMAKKLGYKIVAEGVEELPQVDYLNALGCDL 553

Query: 935 IQDSHVASPLGFNSILKL 952
           IQ  + + PL  +  LK 
Sbjct: 554 IQGYYFSKPLQPDDFLKY 571


>gi|239982468|ref|ZP_04704992.1| integral membrane phosphodiesterase [Streptomyces albus J1074]
          Length = 1006

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/816 (17%), Positives = 306/816 (37%), Gaps = 46/816 (5%)

Query: 154 NPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN 213
           NP     F +  + P +  + +                   +IG + L   +        
Sbjct: 113 NPSIADLFFLCFAPPAVVGLLVLAKRPVTRAGWVCLALDSWLIGGSLLTLAWSLALAHT- 171

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
            + +   + + A + L Y  +D   +S ++ L        R+    A+ +  +  L   L
Sbjct: 172 -ADIEGGSVSYAALNLAYPLLDIALVSMILALHFRRSSAGRSALNTAIGALALTVLCDAL 230

Query: 274 HWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVT---------ASIARITLASIVLY 321
             +       + G I  +G    ++L   + +                       +++  
Sbjct: 231 FTSPLLHNSYRSGQILDAGWFAGSLLLAYAPWVGRHRESERGAVEEPPAQDARPGAVLPA 290

Query: 322 YTYFIIYHGMKGYERAVL--LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
               I  H         L  L P           L+  +  R  + ++   +    V++ 
Sbjct: 291 GHPAIAAHDRTSPISGSLAALTPYLAAAVCTLGILYNVVNGRSVDRVVL--VTACTVVLA 348

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +++   ++  ++     ++ +          V GS D++   D        +P  + + G
Sbjct: 349 LVVRQGIM--LIDNITLTRELAHQENHFRSLVQGSSDVIMIADPSGTLRYVSPAASGVYG 406

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR---RGRLQYEFRVRAADNQFHWMI 496
             +  +     +   +IH  D       +  F+          + E R ++    +  + 
Sbjct: 407 RDASELEDTELS--AHIHPGDLGRVVHEVRRFLAADPALEPTTRIECRFQSGRGTWLNVE 464

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +             I  + D+TE+ +    +  +A  D LT +PNR  F  R++  L 
Sbjct: 465 STVNRHQG------GLIFNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTRRVSQALS 518

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +    V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ 
Sbjct: 519 -GRRSSDRGAAVLFIDLDGFKAVNDTIGHQAGDELLVHAARRLDEAVRAGDTAARLGGDE 577

Query: 617 FGIILISENNSLKIAD------FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           F  +++ +    + A        A  +RK ++ P  +   ++ V ASIG A +      +
Sbjct: 578 FAALILGDTGEDRAAREGHIQELADRLRKRLSEPYAIDGNDVRVAASIGVA-FAEPGQNA 636

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPII 728
            E+L+NA+LAMY AK  G + V  +             +   L  A+   E  L++ P++
Sbjct: 637 GELLRNADLAMYRAKAAGKDRVVLYAPQMQADVVRKAELASRLRSALNAGEFALLHQPVV 696

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L   ++  + A  +W   +    + +EF+ +A+       +  + LE+           
Sbjct: 697 DLTTGKVAAVAAQARWRSGQGILFTPAEFLRVADNGDRAAELGRWTLEQAIAQAAERHRS 756

Query: 789 ANMPPIFILINIASKDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            +  P+   + + ++ LLD       ++AL+++       + L  ++S      +     
Sbjct: 757 GHAAPVV--VRLGARRLLDRAAPPYAVEALLTRYGLPSGGLVLELADSDSSVPQDALEQR 814

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L  LR++G+ + LD FG   +    L  +P D +K + SL+ G   + ++  I   ++ +
Sbjct: 815 LTVLRRLGVRIALDGFGGGHAAADALRRLPVDILKLDRSLVEGVVESARQHKITAGVLRI 874

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           A ++    +A+ +     +  L  MGC + Q    A
Sbjct: 875 AADLGLQTVAEGVDRPEQVVALRTMGCTHAQGMAFA 910


>gi|284050274|ref|ZP_06380484.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
 gi|291568236|dbj|BAI90508.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 579

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 110/424 (25%), Positives = 216/424 (50%), Gaps = 6/424 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNR +  DR   I++   + D+    ++ + +D++ +IND LG    + +L  +
Sbjct: 150 DGITNLPNRLALRDRFEKIVENLPSYDSGLIPIVCLSVDRFNRINDTLGYESAEALLKQV 209

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ + +     +A L+   F II     +  ++ + A  +R ++A P+ +  +E+ + 
Sbjct: 210 GERLVKAMDNQGTVASLTSGEFAIIGQLAGSENQVNEQAKLLRDAVAEPLLINGQEMVIM 269

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCL 713
           AS+G A +         +LKN+++A+  ++  GGN    +R S     S+ + ++ DL  
Sbjct: 270 ASMGIALYPIHGQDIDWLLKNSQIALNSSRSYGGNRCTLYRDSLQVLSSESLALEADLQK 329

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +EL L Y P + L   +IVG EAL++W+    G +S   F+ +AEE  +I+ I  +
Sbjct: 330 AIARNELQLYYQPKVCLKTGKIVGAEALLRWNRCNNGLVSPGLFIPLAEETGLIETIGEW 389

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++   R I +W +   +  I + +N+++        CE +  +++     P+ ++L  +
Sbjct: 390 VVKTACRQIKTWTNLGLL--IPVAVNVSAYQFNQANFCEHLMEILNDQGVDPAYLELELT 447

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES+++ N E S   L  L+ +G+ +++DDFGT  S L+YL   PFDT+K +   +     
Sbjct: 448 ESILVKNEELSIRKLKELKSLGVKVSIDDFGTGYSSLNYLNKFPFDTLKLDRCFVKDVHQ 507

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             K  AI++++  M K +   ++A+ +    ++  +    C  IQ    + PL       
Sbjct: 508 NPKTQAIVKAVTMMTKQLNLKVVAEGVETAEELAFIYDNLCHEIQGYIFSPPLTDAQFEG 567

Query: 952 LLKE 955
           LLK 
Sbjct: 568 LLKS 571


>gi|86145710|ref|ZP_01064039.1| hypothetical protein MED222_03605 [Vibrio sp. MED222]
 gi|85836409|gb|EAQ54538.1| hypothetical protein MED222_03605 [Vibrio sp. MED222]
          Length = 647

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/490 (24%), Positives = 222/490 (45%), Gaps = 16/490 (3%)

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R+GR   E      +N+ H   +  + + + +  +L         T+QK++L    
Sbjct: 170 LFSARKGRDILEEVSCKIENKTHHFDVHGKWLFDKSELLLNLTCT----TKQKENLIKAR 225

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
            NA  D LT + NR+    RL + +       +    +M +D+D +K +ND  G +VGD 
Sbjct: 226 YNAEHDCLTELYNRRGITKRLESSIAC-----HSPFELMFVDLDGFKLVNDTYGHSVGDQ 280

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  + +R+ ++L     + R  G+ F +I  +  N   I      +  S+     +   
Sbjct: 281 LLKKVGKRLKQILDETCTIGRFGGDEFIVIAHARKN-QNIPLLCSRIIDSLNKSFQIKGI 339

Query: 651 -EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK- 708
             ++V  SIG A +  +      +LK A +AM+ AK  G N  ++F  +  +     ++ 
Sbjct: 340 GTLSVGCSIGSAHFPDNATDKESLLKQAGMAMHVAKANGRNRFQTFTPNLAQILHRQVEI 399

Query: 709 -EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L LA+E  +L L Y PI+     ++ G EAL++W     GNI   EF+ +AEE   I
Sbjct: 400 RHRLTLALEGDDLNLHYQPIMDTNSNKVKGFEALLRWSDKDLGNIEPDEFISLAEETGQI 459

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L    + +  W  + +   + + INI+    +     E + A+++     P  
Sbjct: 460 VPLGKWVLNSALKQLSIWHRKFDDE-LVMSINISCIQ-MHTTFAEQLSAMLNFYNIQPKS 517

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I L  +ES ++      R  L  +  +G+ L LDDFGT  S LS L  +P  TVK + S 
Sbjct: 518 IALEITESSMIFKHGEVRQALDDISALGVELHLDDFGTGYSSLSMLHDLPISTVKLDKSF 577

Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           + G+ +   AI+++   + + +   ++A+ +  E     LT  G  Y+Q    + P+  +
Sbjct: 578 VHGTYKGSEAIVQATYAICEKLGLMVVAEGVETETQKAFLTSCGYQYLQGFLFSKPIPPD 637

Query: 948 SIL-KLLKER 956
            +  + L  R
Sbjct: 638 EVEMRFLSSR 647


>gi|109899665|ref|YP_662920.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109701946|gb|ABG41866.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 785

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 220/432 (50%), Gaps = 9/432 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   A+ D LT IPNR  F + ++ ++  +         V++ID+D++K+IND LG 
Sbjct: 348 EAQIHQLAYFDELTHIPNRIQFSNHISDMIRQA---PECELIVLMIDVDRFKEINDTLGH 404

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD++L+++ +R+    +     ARL G+ +  + + E N+ +  D A  +      P 
Sbjct: 405 DLGDELLIAIAKRLHSHTQNKGFCARLGGDEYAWVGLQEANT-RPQDVAQNLLSVFEQPF 463

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDR 704
            +    + V  S+G A +     +   +++ A++AMY  K +       +  ++     R
Sbjct: 464 KIENLVLDVDCSMGIALYPQHASSLQGLMQCADIAMYSCKDQHNPFALYNDALNKHSVVR 523

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +   L  A+   +L L Y P + +  ++I  LE LI+W HP+ G +   +F+ +AE+ 
Sbjct: 524 LSLMSQLKGALGEGQLELHYQPKLTIASDKIETLECLIRWFHPEHGFVPPDDFIPLAEQT 583

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I+ +  + L      +  WRD+       + +NI++ DL+D  L   +++L+++    
Sbjct: 584 GAIRHVTQWALRTACEQVKRWRDK--NICFSVAVNISAIDLVDLSLPASIESLLNEFDLP 641

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS + +  +ES VMG+PE +   L  LR +G++L++DDFGT  S ++ L  +P D +K +
Sbjct: 642 PSALTMEVTESAVMGDPENALKALNLLRDMGVTLSIDDFGTGYSSMAQLKKMPVDELKID 701

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +      ++   ++++++ +A+N+  T +A+ +     ++ L  +GC   Q  ++  
Sbjct: 702 KAFVLALATNQEDRVMVKTLVSLAQNLGLTTVAEGVEDLETLEFLREVGCTKAQGYYMTK 761

Query: 943 PLGFNSILKLLK 954
            L  + ++   +
Sbjct: 762 ALRADELISWYE 773


>gi|153871032|ref|ZP_02000303.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152072502|gb|EDN69697.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 667

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/518 (23%), Positives = 227/518 (43%), Gaps = 27/518 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              ++I+ +       +      ++       + + ++        ++  P    + G  
Sbjct: 150 FIISMIEDITERKRAEEARLEAEKKYREIFENAIEGIFQSTPNGRYLSVNPAFVRMFGYE 209

Query: 442 SGSMHGPIRNWLP---YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMII 497
           S          +    Y+    R  F     + V  +     +E++ R  D +   W+  
Sbjct: 210 SAEQVYTEITDIGQQLYVDPQRRIEFL----NLVEKQSNIPDFEYQARHRDGKKIIWVNE 265

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +  + +  G I  Y G   ++TE+K   E +  +A  D LTG+ NR +F  RLT  +  
Sbjct: 266 TVHVVRDKQGKIQYYEGTIENVTERKLIEEKLRHDATHDQLTGLFNRAAFTTRLTEAISK 325

Query: 558 SATDDN----------------LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
              + +                +   V+ +D+D++K +ND LG  VGD +L  +  R+  
Sbjct: 326 LKQEKSELFILNSQSPFPKEKPIPFAVLFVDLDRFKIVNDSLGHLVGDQLLTEIALRLEL 385

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            +   D++AR  G+ F ++  +  +   +      +++ +  P  +       TASIG A
Sbjct: 386 KISKNDMVARFGGDEFALLFENIQDLDDLESRVDTLQQQLNQPYLIKNDIFNTTASIGIA 445

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSE 719
                 +T+ EML++A+ AMY AK +G      F+ S      +   +++DL   +E  E
Sbjct: 446 LSKHEYLTADEMLRDADTAMYEAKKQGRGKSIIFQPSMRTRVVNSHKLEQDLRKGLEKGE 505

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             + Y PII L +   VGLEAL++W HP+ G +   +F+ +AEE  +IK + L++ E   
Sbjct: 506 FCVYYQPIISLENRHTVGLEALVRWIHPERGFVGPDQFIPLAEETGLIKELGLWVFETAC 565

Query: 780 RDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             +  W+ Q  +   + + IN++   L    L   +Q +I K+       ++  +ES +M
Sbjct: 566 TQLRRWQIQFAHHANLGMNINVSPIQLKQPRLVREIQDIIEKSGIKGPTCRVEITESAMM 625

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +PE +  +   L+ + I L +DDFGT  S L YL   
Sbjct: 626 QDPESALTIFKELKNLEILLYVDDFGTGYSSLDYLQNF 663



 Score = 78.8 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 4/143 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            + Q +      +  + +  +R       +   +   D+    +     + ++L      
Sbjct: 28  ALNQEIETRERMTIDLEASRQRFQAIFNEAAIGIALLDLDNKILDCNRALQSMLRYREVE 87

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           ++          H +D    + +LD  +  +    +   R    +    W       + +
Sbjct: 88  LNNKF--LKKLTHPSDIQKDQLMLDRMLAGKYDTYRIGKRYICKNGAIVWTNQSSSIVRD 145

Query: 505 SNGDILRYIGIANDITEQKKSLE 527
           +N      I +  DITE+K++ E
Sbjct: 146 TNHP--FIISMIEDITERKRAEE 166


>gi|126738872|ref|ZP_01754568.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6]
 gi|126720053|gb|EBA16760.1| hypothetical protein RSK20926_03109 [Roseobacter sp. SK209-2-6]
          Length = 789

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/586 (21%), Positives = 248/586 (42%), Gaps = 18/586 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +G L   +  +    I+         +    + +R   A+  + D V   D     V   
Sbjct: 206 LGMLARSLEQLRLGKIEMAELRAESDESARRENKRILRALQSTRDAVLLADENGQVVFCN 265

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
           P+     G A        R WL        +         +       +    V +   +
Sbjct: 266 PNAEAFFGNARAGYRLNFRTWLTT------ELAEKAESHVLRKENFAFEANI-VDSQSGE 318

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
              +++R  P+ + +G  L  + +A+D ++Q +  E     A  D+LTG+PNR+      
Sbjct: 319 DLSLLVRSGPIRDEHGLYLGTLLLASDHSDQARQAEWARYLAEHDSLTGLPNRRLMEQTF 378

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            + L   A +     ++++ D+D +K IND LG   GD +L  + ++         + AR
Sbjct: 379 QSWLQEEAEE----VSILLADLDHFKLINDTLGHPAGDALLQVVAQKFKACASTYVLAAR 434

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F I++   ++  ++ + A  +   ++ P  +  + +    S G A+ +      S
Sbjct: 435 LGGDEFAILVKGASSLERLTNIAERLVIEMSQPQEINGQVLHTGMSAGIATLSGPDSKPS 494

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
           E ++ A+LA+Y AK  G   VE F        +    ++ +L  A+E  ++  VY     
Sbjct: 495 EGIRRADLALYEAKRAGRGTVEVFHEDLETEIKRKALLERELRHAIEQGDIRPVYQIQTD 554

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L   EI+G E L +W H + G +S +EF+ IAE+  +I+ +   ML +  +    W +  
Sbjct: 555 LKTGEIIGFETLARWHHRQLGTVSPAEFIPIAEDSGLIRELTRQMLLQAFKTTAKWHEMG 614

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                 + +N++ K      + E +   + +       ++   +E+VV+ + + +   + 
Sbjct: 615 FRG--RVAVNLSPKLFGS-RVDEFLNDCLYEANCPAEAVEAEITETVVLASGQSALTEIQ 671

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            L+++G+++ LDDFG   S LSYL   P D +K + + ++    +++  AI+ +I  +  
Sbjct: 672 ALQELGVTVALDDFGMGYSSLSYLQKFPVDKIKVDSAFVSKLPESQETRAIVVAIAELGH 731

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +   +  +    +   K L     DY+Q  +   PL   +    L
Sbjct: 732 ALGMRVTGEGAETDEHRKLLKACKVDYLQGYYDGPPLAERAATARL 777


>gi|319943940|ref|ZP_08018220.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lautropia mirabilis ATCC 51599]
 gi|319742701|gb|EFV95108.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lautropia mirabilis ATCC 51599]
          Length = 989

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 225/440 (51%), Gaps = 10/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++    +   +  D LTG+PNR+   +RL   L+           V+ ID+D+YK IN
Sbjct: 550 ERQRLEAQLRRQSQHDALTGLPNRKYLSERLEKQLEHKQ-----PLAVLYIDLDRYKAIN 604

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VLV + RR  + +   +I +R+ G+ F ++L+++N++ K+   A  +  +
Sbjct: 605 DTLGHQAGDQVLVEMARRFKDTIGPGNIASRVGGDEFILVLLNQNDAKKVEHIARQVLAA 664

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  L ER   ++ASIG +        +  ++K A+ AMY  K  G N V  F     
Sbjct: 665 AERPFILQERAHFLSASIGVSLSPQHGTDAGTLIKRADAAMYTVKSEGRNDVRFFSPDLK 724

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +   +V +  +  LA+E  E+ L Y P+I   D ++VG+E LI+W HP  G +   +F+
Sbjct: 725 SAKVAQVQLSSEFPLAIERGEVELHYQPVISSFDLQVVGMEGLIRWRHPTQGLLLPDQFL 784

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+   +K +  + + R  +D     D      + + +NI+   + ++     ++ ++
Sbjct: 785 PSAEQSNAMKQLASWTIRRALQD-RQKLDLHRYGNLVVSVNISPNQINEDRFLAQLKGML 843

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  ++L  +E+ ++    R+   +  LRK+G+ + +D+FGT  + LSYL  +P 
Sbjct: 844 DEYQVRPEMLRLELTENTLIEASSRTIAQMTALRKLGVQVMIDNFGTGYASLSYLRNLPV 903

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   + G  + R   AI+++I+ +A+ ++  +IA+ +    ++  L  +GC  +Q
Sbjct: 904 SGLKIDQGFIRGLPDDRGNAAIMQAIMTLAEKLKLQVIAEGVETAQEMHALRELGCRMMQ 963

Query: 937 DSHVASPLGFNSILKLLKER 956
              +++ L    + + LK+R
Sbjct: 964 GHFISAALPPQKLSEYLKKR 983



 Score = 95.4 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 2/203 (0%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            I    +  +  +G  +         +    +    + +         + + A    ++ 
Sbjct: 18  FILPSAVALLIILGGELYPEWMRTYMMYLAPVALFALTVFAYSLLNTSEDLRAERAVNRR 77

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     +  LA   +    W WD     +  +     + GL         + +   +H  
Sbjct: 78  LQELQAQYGLAEGLAHVGSWVWDQKTKMIHMSGGCYNVFGLEKEHGSVSQQAFFICVHPE 137

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D++ F++        R+ R+   FR     +   W+     P    +G + R  G+A DI
Sbjct: 138 DQEKFKSE-HRRQSARQERIDLVFRYVKDGSTPIWVRWVGTPELGEDGQLARIAGVAQDI 196

Query: 520 TEQKKSLEGILCN-AFQDNLTGI 541
           TE K + + +    A    LT +
Sbjct: 197 TESKAAADQLADEKAKYLTLTEL 219


>gi|262369906|ref|ZP_06063233.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314945|gb|EEY95985.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 692

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/433 (28%), Positives = 207/433 (47%), Gaps = 8/433 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A QDNLT +PNR    +     L       N     + ID+D++K +NDV G
Sbjct: 254 ANKELANQAVQDNLTKLPNRLYLAEY-AHFLFTDQRFRNESIAFLYIDLDRFKAVNDVFG 312

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +LV LT RI   L   + + R+ G+ F ++L       +    A  + + I   
Sbjct: 313 HHVGDQLLVQLTTRIHRHLSKNEKILRIGGDEFLMVLEQAT-PEQACQMAEHVLELIQDS 371

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +  +EI V+ASIG A +        ++L NA+ AM  +K++G N    F  S  + + 
Sbjct: 372 FLIAGKEINVSASIGIAMYPEHGSNLQDLLINADAAMLTSKYQGRNTYSIFNYSFDQQEA 431

Query: 705 VM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +  DL  AVE  +  L Y P   + D+ I G+EALI+W HP  G ++ + F+  A
Sbjct: 432 KSQTKLINDLYKAVEEQQFVLYYQPKFTIQDQRICGVEALIRWKHPTLGLLTPNMFIKGA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  + LE+  + +  W  +       I +N+++       L   ++ L  K 
Sbjct: 492 EKTGLIIQMGYWALEQACKQLQIWEREKIEL-YPIAVNLSAVQFEHKHLFNNLEHLFDKY 550

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P+ + +  +ES  M + E S   L RLR++GI L +DDFGT  S   YL  +P D +
Sbjct: 551 KVNPNHLIIEITESTAMHHIEASIRTLQRLREMGIRLAIDDFGTGHSSFLYLKNLPVDEL 610

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +   T   K   IL SI+ +A  +   + A+ +   + ++ L+R+GC  +Q   
Sbjct: 611 KIDRGFIHELTVGSKDEMILESIVHLAIRLGLVVTAEGVESPLQMEILSRLGCQQLQGYL 670

Query: 940 VASPLGFNSILKL 952
           +  P+    + + 
Sbjct: 671 LGMPMDVKRLEEF 683


>gi|109897608|ref|YP_660863.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109699889|gb|ABG39809.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 703

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/685 (20%), Positives = 294/685 (42%), Gaps = 65/685 (9%)

Query: 339 LLIPAWILIFIWFIGL-----WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           LLI A     I+   +      +  T   +  ++  A    L+      G T++  +   
Sbjct: 24  LLILAIAAFLIYSAFVDDYRDNLVKTMDSNASLLSAASRSALLFHDEHAGQTILASLAKI 83

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDW---DIVRDRVTTTPDI---------ATILGL- 440
                    D E++  A     D  WD    DI      T  ++           +LG  
Sbjct: 84  PAMRFAQLLDSEKKRFATYTRDDASWDVMLDDIKPGHFFTNDNLYLTQDITLGEDVLGYI 143

Query: 441 ----ASGSMH------GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                + S+       G I  W+  +           +   +     RL +     A + 
Sbjct: 144 VLSADTHSLQAQQRRYGRIVLWVFALGSLLAYLLNWRMQKRLQSPVKRLIHLVDYVAKEG 203

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL----------------EGILCNAF 534
           ++           +  G ++  I    D  E+ +S                 E +   A 
Sbjct: 204 RY--DQRIFNRRQDDIGRLVNGINSMLDTIEEHQSKLSEHHEHLEGLVELRTEQLYERAN 261

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +PNR S  ++++  ++++  +      +M +D+D++K IND LG  +GD +L+ 
Sbjct: 262 FDALTQLPNRHSLTEKISQAIEIA-RERKTNLALMFLDLDRFKVINDSLGHFMGDKLLIE 320

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + ++I   L   D++ R  G+ F +++ +      +   A  +  S+++P+ +   ++ +
Sbjct: 321 VAKKIQHKLSDSDVVGRWGGDEFVVLIQNPKELSSVDSLAKEIIASLSLPLIVSGHQLHI 380

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
           + SIG A +      +S +LK+A+ +MY AK  G      F          R+ ++  L 
Sbjct: 381 STSIGIACFPDDGDDASSLLKHADTSMYKAKELGPGRFRFFDQDMLNDSVWRLELETQLR 440

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A    +  LVY P + + DE++VGLEALI+W++ +   I+ + F+ IAE++ ++++I++
Sbjct: 441 QASAQQQFALVYQPKVNVNDEQLVGLEALIRWNNGQ-EYINPATFLPIAEDIGLMESISV 499

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L++  +    W+       + + +N+ +  L+  +  E ++  + ++  +   +++  
Sbjct: 500 WVLKQACQQNADWQRAGFDI-VPVAVNLPASFLMSPQCLELIKGALHQSGLAAQYLEIEI 558

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E+  + + E +  +L  +  +G+ + +DDFGT  S +SYL  +P +T+K +G  +    
Sbjct: 559 TENTFIASTELAVDVLSAIHGLGVKIAIDDFGTGYSCMSYLRDLPINTLKIDGIFINDLV 618

Query: 892 -------------TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
                          +   I+R+II + K++  + +A+ +  +  ++ L  MGCD IQ  
Sbjct: 619 APDCVHEGNAEDHHLRDEGIVRTIITLGKSLGLSTVAECVEHDYQVQILKSMGCDIIQGY 678

Query: 939 HVASPLGFNSILKLLKERFPLVKNT 963
             + PL   ++   L       K +
Sbjct: 679 FYSKPLKVVALEAYLGAHGRAAKES 703


>gi|85373611|ref|YP_457673.1| hypothetical protein ELI_03920 [Erythrobacter litoralis HTCC2594]
 gi|84786694|gb|ABC62876.1| hypothetical protein ELI_03920 [Erythrobacter litoralis HTCC2594]
          Length = 552

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 217/457 (47%), Gaps = 17/457 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           RY  +  +I  ++ +       A  D LTG  NR+S        +D +  +       ++
Sbjct: 76  RYRELTVEIDTRRAAEAKARELAEIDPLTGCNNRRSATIETDRAIDKAHKEGRA-IAFIM 134

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLK 629
           +D+D +K++ND+ G   GDDVLV    R+  LL    +LARL G+ F I+   +  +   
Sbjct: 135 VDLDNFKQVNDLNGHQAGDDVLVRAADRMSSLLPRDGLLARLGGDEFAIVHPYDKTSPDL 194

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASW------TSSKITSSEMLKNAELAMYH 683
           +  F   +  S+A P+ +  +++ VT S+G AS         ++  +  ++  A++AMYH
Sbjct: 195 VEQFVSRLIDSLAKPMAVQSQKVDVTVSVGIASGMSGRHGEQNETDAQVLMHQADIAMYH 254

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +G N    F   + +    R  ++  + + VE  E    Y   + +    ++G E L
Sbjct: 255 AKRQGKNRYYWFEETMENELRFRNQLERGIRIGVEKGEFVPHYEQQVDIATGRLMGFEML 314

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W+ PK G IS   F+ IAE++ +I  ++  ++ +  RD   W      P + I +NI+
Sbjct: 315 ARWNSPKLGMISPEIFIPIAEDIGVIAELSEGLMRQAFRDAKEW-----DPSLTISVNIS 369

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L D    + +  L+ +  +   R+ +  +ES +  N    R ++  L+  G+ ++LD
Sbjct: 370 PVQLRDPWFSQKILKLLQECNFPAQRLDIEITESCLHDNVGVVRSMITSLKNQGVKISLD 429

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L  +PFD +K + S ++   ++     I+ +II +   +E  I A+ I 
Sbjct: 430 DFGTGYSSLSQLRSLPFDRIKIDRSFVSELKDEDANSKIVSAIISLGAGLEMPITAEGIE 489

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               ++ L +MG    Q      P   + + K L++ 
Sbjct: 490 DATILETLQQMGEMKGQGYLYGRPESASDVRKRLEKE 526


>gi|254785704|ref|YP_003073133.1| PAS/GGDEF/EAL domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237684709|gb|ACR11973.1| PAS/GGDEF/EAL domain protein [Teredinibacter turnerae T7901]
          Length = 836

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/555 (19%), Positives = 226/555 (40%), Gaps = 17/555 (3%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E   L +     +V + D              + G    +  G           +D    
Sbjct: 282 ETHQLLLDNLQTVVMELDADFRIRFLNVPWRGLTGYDLDASLGCKLTQF-VFDDDDSYGV 340

Query: 465 --RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                L   +   R   + E  +  +  Q  W  ++IR   + N +        ++IT++
Sbjct: 341 GLEAKLQEVLSGARELAELELCLLDSRGQKLWAQVKIR--RSENHNAASLTVCLDNITKR 398

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K++   +   A  D+LTG+ NR  F + L      +  +      ++ ID+D +K IND 
Sbjct: 399 KEAQRQLEYLAMHDSLTGLFNRHYFEESLRQSFADAIRNQRQHG-LIYIDLDYFKVINDT 457

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD+VL  +   +   ++  D+L RL G+ + +++    +   +            
Sbjct: 458 FGHHEGDEVLRQVAHLMKRRIRAADLLCRLGGDEYAVLVHDVCSKKLLEIARELQAIVND 517

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                    + +  SIG +      + + E L  A++A+Y AK RG N +  +      S
Sbjct: 518 FVYQAKNHRVNLGCSIGLSVIDGEAVCAEEYLMQADIALYVAKGRGRNLIHLYDPQDQES 577

Query: 703 DRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           + +       + +  A+    + L + P+    ++ IV  EAL++    +   +  ++F+
Sbjct: 578 EELRSRINWTQRMRKAISEDRIVLHFQPVFDAHNKNIVYYEALVRMRDEEGNLVYPNQFI 637

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E    +  ++ ++++   R +   +         + IN++ +   D  L   ++  +
Sbjct: 638 PALENTGEMHLLDRWIVKLAIRSVRECKKIE-----RVAINLSVQAFKDENLVPVVKEAL 692

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    +P  +    +ES  + N   +R ++ +L +IG +  +DDFG+  S  +YL  +P 
Sbjct: 693 AVNGVAPECVTFELTESASLFNLAITRNMITQLNEIGCTFAIDDFGSGFSSFAYLKELPA 752

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +GS +    +     A++RS+I + + +    +A+ +  E  +  L + G D +Q
Sbjct: 753 HFIKLDGSFIKNLHQDDVDKALVRSLIQVVQALGKKAVAEFVENEQILDILRKFGVDCVQ 812

Query: 937 DSHVASPLGFNSILK 951
             H   P+ F S++ 
Sbjct: 813 GYHTGRPVPFESLMD 827


>gi|239990953|ref|ZP_04711617.1| putative integral membrane phosphodiesterase [Streptomyces
           roseosporus NRRL 11379]
          Length = 940

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/784 (18%), Positives = 314/784 (40%), Gaps = 42/784 (5%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           +I G    LA  L + +  + + +   + A A + L Y  +D   +S ++ L      + 
Sbjct: 151 LIGGSLLTLAWSLALAHTAHMAGVQDTSVAPAALSLAYPLLDIVLVSMVLALHFRRAGVN 210

Query: 254 RACSEIALSSSLIIFLFMYLHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           R+    A+++  +  L   +  +   R     G +  +G    ++L   + +     A  
Sbjct: 211 RSAVNTAIAALALTVLSDAVFTSPLLRSTYHSGQLLDAGWFAGSLLLAYAPWGARRGARR 270

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
                    +                   L P           L+  +  R  + ++   
Sbjct: 271 PARPGPPRAIASRPIAGSLAA--------LTPYLAAAVCTLGILYNVVDGRRVDRVVI-- 320

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
             G  V++ +++   ++  +L     +Q +          V GS D++            
Sbjct: 321 FTGCTVVLALVVRQGIM--LLDNIALTQELAQKENHFRSLVQGSSDVIMIAAPNGTLRYV 378

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG---YRRGRLQYEFRVRA 487
           +P  A + G  +  + G        IH  D       +  F+    +     + E R R+
Sbjct: 379 SPAAAGVYGRDAEDLVG--AELSSIIHPEDLGRVVHEVRRFLAAPPHEEPTTRIECRFRS 436

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +  +   +             +  + D+TE+ +    +  NA  D LT +PNR  F
Sbjct: 437 GAGDWLNVESTVNRHQG------GLLLNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALF 490

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             R+   L       +L   V+ ID+D +K++ND +G   GD++L+   RR+ E ++  D
Sbjct: 491 TARVRQALG-GRRAGDLGTAVLFIDLDGFKQVNDTIGHQAGDELLIQAGRRLQESVRAGD 549

Query: 608 ILARLSGNRFGIILISENNSL------KIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
             ARL G+ F  +++ +          ++ + A  +R +++ P  +   E+ V ASIG A
Sbjct: 550 TAARLGGDEFAALIMGDGTRDQGAREYQVHEIADRLRLTLSQPYRIGASEVRVAASIGVA 609

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
            +    IT +++++NA+LAMY AK  G + VE +             +   L  A+ + E
Sbjct: 610 -FAEPAITPTDLMRNADLAMYRAKAGGKDRVELYAPQMQADVVRRSELATRLRTALRDGE 668

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L++ P++ L    +  + A  +W   +    + +EF+ ++ +      +  ++LE   
Sbjct: 669 FALLHQPVVHLASGSVAAVAAQARWRSAQGILFTPAEFLRVSGDDDRTAELGRWLLEEAV 728

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVM 838
                     +  P+ + + +++  LLD       ++AL+++       + +  ++S   
Sbjct: 729 AQAADRARAGH--PVSVSVRLSAARLLDAAPPPGSVEALLTRHGLPSGALMIEVADSDPR 786

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
            + +     L  LR++G+ + LD FG+  + ++ L  +P D +K + +L+ G  E     
Sbjct: 787 VSFDALEQRLVALRRLGVRIALDGFGSGFAAINALRRLPIDVLKLDRNLVEGVVESARLH 846

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
            I   ++ +A ++    +A  +     +  L  MGC + Q    + PL    + + L++ 
Sbjct: 847 KITSGLLRIACDLGLQSVADGVDVPEQVLALRAMGCTHGQGMAFSGPLDEYRLRRALVRG 906

Query: 956 RFPL 959
            FP+
Sbjct: 907 EFPV 910


>gi|56479138|ref|YP_160727.1| putative response regulator receiver [Aromatoleum aromaticum EbN1]
 gi|56315181|emb|CAI09826.1| putative response regulator receiver [Aromatoleum aromaticum EbN1]
          Length = 1124

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 209/446 (46%), Gaps = 8/446 (1%)

Query: 518  DIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            D++   E     + +   A+ D LTG+PNR   L+ L   L         R  V+V +I 
Sbjct: 672  DVSFALEFIAKKDRLAFVAYHDLLTGMPNRAHLLEHLAQALQSVRQHPGERVAVVVWNIH 731

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +++ IN+  G  VGD VL  + +R+      P  +AR++ + F  IL       +IA   
Sbjct: 732  RFRNINETFGRQVGDGVLREVGQRLSAAWSNPMDVARIAVDHFAGILSDNRQVTEIAHLI 791

Query: 635  IAMR-KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-V 692
              +        I + E E+ V AS G A  T     +  +L+NAE A+  AK  G N+  
Sbjct: 792  EELAADVFNRSIVVGENELRVAASAGIAVSTGEDQDADTVLRNAEAALRKAKGSGMNYLF 851

Query: 693  ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                +++  ++ +M++  L  A+E  E  L Y P +      + GLEAL++W+ P  G +
Sbjct: 852  YGPEMNARVAESLMLENRLRQALERDEFVLYYQPKVSGATGLVTGLEALMRWNDPTVGLV 911

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               +F+ I EE  MI  + L+ + R   D   WR     PP  I +N+++  L      E
Sbjct: 912  QPDKFIPILEETGMILQVGLWAIRRALADAHDWRATGIDPP-RIAVNVSAIQLQQKNFVE 970

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++  I +       + L  +ES+VM   + +   L  +R +G  + +DDFGT  S L Y
Sbjct: 971  SVRCAIEEANGDARHVDLEITESMVMTEMQENIAKLSEIRLMGGDIAIDDFGTGYSSLGY 1030

Query: 873  LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            L  +P   +K + S +     T + + I+ +II +A +++  +IA+ +  E   K L   
Sbjct: 1031 LAKLPVGALKIDKSFIETMATTPESMTIVATIISLAHSLDLKVIAEGVEEEEQAKFLRLF 1090

Query: 931  GCDYIQDSHVASPLGFNSILKLLKER 956
             C+ +Q   ++ PL    ++  L+ R
Sbjct: 1091 KCNELQGYLISRPLPPEQVVDFLRSR 1116


>gi|302188186|ref|ZP_07264859.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 546

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 211/444 (47%), Gaps = 11/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++ ND L
Sbjct: 107 RLEDSLRRLVGQDPLTGIANRQGF-----QALLSARLSEGGSLALGHLDLDNFRRANDSL 161

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  +   ++ 
Sbjct: 162 GHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERALQMAERITDVLSE 221

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F     R+ 
Sbjct: 222 PYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCTYHLFDERINRNA 280

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +  SEF+ +A
Sbjct: 281 RSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQERGLLPPSEFVPLA 340

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  LI++ 
Sbjct: 341 EQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLNRLIAEH 399

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 ++   +E+ VM   E+ R  +  LR++G+  +LDDFGT  S   +L  +P   +
Sbjct: 400 DVDARWLEFELTETAVMRRSEQVRQTMDALRQLGVRFSLDDFGTGYSSFMHLNSLPIALL 459

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ +Q   
Sbjct: 460 KIDMGFVAQMELREENRKLVNAMITLAHNLNLEVVAEGVETAGQLELLRSFGCNQVQGYL 519

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           ++ PL    ++  L+ +      +
Sbjct: 520 ISRPLPVEELVTYLRSQAAHADTS 543


>gi|299532339|ref|ZP_07045731.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298719577|gb|EFI60542.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 1125

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/460 (25%), Positives = 217/460 (47%), Gaps = 7/460 (1%)

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               I  ++ S  D+   I I    +EQ +    +      D LTG+PN   F + LT  +
Sbjct: 653  EDEIALLTESADDLAFGISILRTRSEQLRVQAEMNHMLRHDPLTGLPNSIEFREVLTATI 712

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            + S++       +   +I++ ++IN+VLG + GD +L     R+ + +     +ARL G+
Sbjct: 713  EGSSSHPEPIAALQF-NIERLREINEVLGFSNGDQILRDFGERLRQSIPDSAHIARLRGD 771

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F ++  +  +       A  + K+I+ P  + + E+ V+A  G A +     T+ E+L+
Sbjct: 772  EFAVLAPTL-DRGSAVALAEELEKTISRPFPIADIELDVSARAGIALFPEHGTTADELLR 830

Query: 676  NAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
                A + AK RG    V        ++ R+ +  +L  A+  ++L L   P +     +
Sbjct: 831  QMGKATHQAKARGLSQCVFDPSHQKNQAGRLTMAGELRRAIAGNQLRLFLQPKVDFSSGQ 890

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            I G EAL++W HP  G I    F+ +AE+  +IK +  +++      + SW+ +    P 
Sbjct: 891  ICGAEALVRWMHPLKGLIPPGLFIDLAEQTGLIKPLTEWVIVAALDLLQSWQAKGCAVP- 949

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             I IN+++++  D +L    +   S+   S   +++  +ES VM + E +   L  +   
Sbjct: 950  -IAINLSARNFRDEQLFAKYRQWHSERSVSTGLLEIEITESTVMEHAEYALRALSEMSDA 1008

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETT 912
            GI L +DDFGT  S LSYL  +P D +K + S ++     R    I+RS I +  ++   
Sbjct: 1009 GIPLYVDDFGTGYSSLSYLQKLPVDYIKIDQSFVSAMHRDRDSATIVRSTIDLIHDLGRK 1068

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +A+ +  +     L  +GCD  Q  ++A P+  +   + 
Sbjct: 1069 TVAEGVETKEHWDLLKDLGCDIAQGYYIAKPMPSSDFQQW 1108



 Score = 81.9 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 2/149 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + +  T    + +  + E     +   GD V   D              + G +    
Sbjct: 206 IRRQLRETEASQRALADNEESLVTTLHSIGDAVLATDTEGRITRMNSVAEQLTGWSINEA 265

Query: 446 HGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMS 503
            G  I      IH   R+     + + +     ++  ++  + A D     +     P+ 
Sbjct: 266 QGRSIEEVFNIIHEQTREPAHIPVATVLATGEVQVLADYTSIIARDGTERPISDSAAPIR 325

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
           +S G +   + +  D+T ++K+   I   
Sbjct: 326 DSKGQLRGAVLVFRDVTLERKAQRIIREQ 354


>gi|193782538|ref|NP_435318.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|307300730|ref|ZP_07580505.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|307319141|ref|ZP_07598571.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|193072994|gb|AAK64730.2| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306895248|gb|EFN26004.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306904264|gb|EFN34849.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 733

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 212/436 (48%), Gaps = 15/436 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++S   +   A  D LTG+ NR SF   L  ++  S  D      ++ +D+D++K++ND 
Sbjct: 294 QESQAELDHLARHDPLTGLANRASFNRLLARVVATSTIDQAN--ALLYLDLDRFKQVNDT 351

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD ++V + +R+ E       ++R+ G+ F  I+++     ++     A+  +I 
Sbjct: 352 LGHPVGDRLMVEVAKRLKETAA-GAAISRIGGDEF-TIIVARTRQDEVEKLCDALIAAIR 409

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
            P  +  + I +  SIG A  T +     E+ + A++A+YHAK  G N    F       
Sbjct: 410 RPFEIDGQPILIGLSIGVAVATGNDADPIEITRKADIALYHAKSAGRNRYAVFGPHMDEL 469

Query: 702 -SDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +  +++DL  A++   +L + Y P+      EI  LEALI+W HP  G I+   F+ 
Sbjct: 470 IRTKRDLEQDLRAALDAGNQLEVFYQPVYSAQSHEISSLEALIRWRHPSKGPIAPDAFVP 529

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  +  F+L+        +      P + I +N+++ +L        + +L+ 
Sbjct: 530 LAETAGLIDRLGAFVLKEACSTAREF------PGLDIAVNVSAVELAQRHYAAQVLSLLR 583

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    PSR++L  +E+ ++         +  LR+ G+   LDDFGT  S    L  +  D
Sbjct: 584 QFGIEPSRLELEITETALLDEAGVCEKNITALREFGVKFALDDFGTGFSSFGRLQRLEVD 643

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +         +A+++SI+ +A      I A+ +  E   + L ++GCD +Q 
Sbjct: 644 RIKIDRSFVHAFDRPGGGVAVVQSIVGIAHAKGLRITAEGVETEEQSEILRKLGCDELQG 703

Query: 938 SHVASPLGFNSILKLL 953
            H++ P+  NS+ +LL
Sbjct: 704 FHLSRPMSKNSLRQLL 719


>gi|320008425|gb|ADW03275.1| diguanylate cyclase/phosphodiesterase [Streptomyces flavogriseus
           ATCC 33331]
          Length = 714

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 214/426 (50%), Gaps = 7/426 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  T L+ +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 254 LRDPLTGLPNRQWLLERTWTALEEAGATGE-RSALVLIDLDRFRAVNDTLGHLAGDRLLL 312

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   L      ARL G+ F ++L + ++       A  +   ++ P++L    + 
Sbjct: 313 QIAERLRLALPRGAEAARLGGDEFAVLLPTADSITSAQRIARHLVAELSSPLDLDGLTLV 372

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A      + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 373 LEASAGVAVHPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 432

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 433 RALDAREVELHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAESSGLMPHLTE 491

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++       ++L  
Sbjct: 492 YVLETALAQVARWRAQGLFVP--VAVNVSPRDVHTPGFAGSVAARLARHGVPAGALQLEI 549

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   L  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 550 TEHVLLEDPQRAADTLAGLTGHGVKMSLDDFGTGYSSLVHLRKLPVSELKIDRSFVARLA 609

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   I+R  I +A ++   ++A+ +  +   + L  + CD +Q   VA+ +      
Sbjct: 610 VDNEDAEIVRCTIDLAHSLGLIVVAEGVEDDETWERLRDLRCDAVQGWLVAAAMPPQETT 669

Query: 951 KLLKER 956
             L+ R
Sbjct: 670 AWLRAR 675


>gi|218676943|ref|YP_002395762.1| hypothetical protein VS_II1184 [Vibrio splendidus LGP32]
 gi|218325211|emb|CAV27142.1| hypothetical protein VS_II1184 [Vibrio splendidus LGP32]
          Length = 647

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 122/490 (24%), Positives = 221/490 (45%), Gaps = 16/490 (3%)

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               R+GR   E      +N+ H   +  + + + +  +L         T+QK++L    
Sbjct: 170 LFSARKGRDILEEVSCKIENKTHHFDVHGKWLFDKSELLLNLTCT----TKQKENLIKAR 225

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
            NA  D LT + NR+    RL + +            +M +D+D +K +ND  G +VGD 
Sbjct: 226 YNAEHDCLTELYNRRGITKRLESSIAC-----RSPFELMFVDLDGFKLVNDTYGHSVGDQ 280

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  + +R+ ++L     + R  G+ F +I  +  N   I      +  S+     +   
Sbjct: 281 LLKKVGKRLKQILDETCTIGRFGGDEFIVIAHARKN-QNIPLLCSRIIDSLNKSFQIKGI 339

Query: 651 -EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK- 708
             ++V  SIG A +  +      +LK A +AM+ AK  G N  ++F  +  +     ++ 
Sbjct: 340 GTLSVGCSIGSAHFPDNATDKESLLKQAGMAMHVAKANGRNRFQTFTPNLAQILHRQVEI 399

Query: 709 -EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L LA+E  +L L Y PI+     ++ G EAL++W     GNI   EF+ +AEE   I
Sbjct: 400 RHRLTLALEGDDLNLHYQPIMDTNSNKVKGFEALLRWSDKDLGNIEPDEFISLAEETGQI 459

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L    + +  W  + +   + + INI+    +     E + A+++     P  
Sbjct: 460 VPLGKWVLNSALKQLSIWHRKFDDE-LVMSINISCIQ-MHTTFAEQLSAMLNFYNIQPKS 517

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I L  +ES ++      R  L  +  +G+ L LDDFGT  S LS L  +P  TVK + S 
Sbjct: 518 IALEITESSMIFKHGEVRQALDDISALGVELHLDDFGTGYSSLSMLHDLPISTVKLDKSF 577

Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           + G+ +   AI+++   + + +   ++A+ +  E     LT  G  Y+Q    + P+  +
Sbjct: 578 VHGTYKGSEAIVQATYAICEKLGLMVVAEGVETETQKAFLTSCGYQYLQGFLFSKPIPPD 637

Query: 948 SIL-KLLKER 956
            +  + L  R
Sbjct: 638 EVEMRFLSSR 647


>gi|327189552|gb|EGE56705.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like protein) [Rhizobium etli
           CNPAF512]
          Length = 737

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 108/448 (24%), Positives = 215/448 (47%), Gaps = 14/448 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K         A +D L+G+ NR      +   +  +         ++ +D+D +K++ND
Sbjct: 292 LKAEENSAREEALRDRLSGLSNRDGLGLAVDRFVAEA-RQSKRNVLLLYLDLDGFKEVND 350

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD ++ ++   +  L+    +LAR+ G+ F I  +S+  +      +  +   +
Sbjct: 351 SYGHGTGDQLIRAVAAGLQVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLSEQILDFM 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +  R + V ASIG A   +  I   E+++ ++LAMY AK  G   +  +  S   
Sbjct: 411 VEPLEIGRRVVVVGASIGIAMSPAGAIDREELVRRSDLAMYKAKEAGRARMTLYDPSMDA 470

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL +A+E+ +L L Y P++    + + G+EAL++W+ P  G +S   F+ 
Sbjct: 471 DREQRNALELDLRIAIESGDLTLAYQPLVDAATQALTGVEALVRWNRPGHGPVSPEVFIP 530

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   +I+++ LF+L +       W +      + + +N++     +    + ++ ++ 
Sbjct: 531 IAETSGLIESLGLFVLRKACETAKQWPE------LNVSVNVSPGQFRNPAFTDYVRYVLK 584

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T    SRI L  +E  ++ NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD
Sbjct: 585 QTEIEASRITLEITEGYMIQNPQRTRQSIERLKGLGVKVALDDFGSGFSSIGYLRQFGFD 644

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G  E +    +L++ + +A++++  + A+ I  E     +   GCD +Q 
Sbjct: 645 RIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEGQAVAMRLFGCDCLQG 704

Query: 938 SHVASPLGFNSILKL---LKERFPLVKN 962
                P+    I  +   L+   P  + 
Sbjct: 705 YLFGKPMVAERITDMLNELRAAAPSTRR 732


>gi|254561486|ref|YP_003068581.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254268764|emb|CAX24725.1| putative diguanylate cyclase/phosphodiesterase (GGDEF and EAL
           motifs) [Methylobacterium extorquens DM4]
          Length = 649

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 206/433 (47%), Gaps = 9/433 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  E     A  D+LTG+PNR+ F  RL  ++  ++   N    + + D+D++K IN
Sbjct: 209 EAQRLGEENQRLAHTDSLTGLPNRRYFFQRLDALIA-ASATGNAAFALAIFDLDRFKPIN 267

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL    RR+         +ARL G+ FG+++ + + +    +    +  +
Sbjct: 268 DTFGHTAGDRVLEETGRRLSAFAADGVTIARLGGDEFGVLIHAADRTADAVELCNRICTA 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI+L E ++    S G A + S+   +  +   A+ A+YH+K R       F     
Sbjct: 328 LHAPISLGETQVVPGCSGGLALYPSAGRAADALFDRADYALYHSKERKRGTTTLFSQEHE 387

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + R    ++  L  A   +E+ + Y PI+  + + I  +EAL +W  PK G +    F+
Sbjct: 388 DAIRAERAVEAALQSADLAAEMEMHYQPILDTVTDRITTVEALARWTSPKLGRVPPDRFI 447

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   MI ++ L +L +   D     D      I +  N++S DL   E    + A +
Sbjct: 448 AVAERCGMIHSVTLLLLRKALADAARLPD-----DIGLSFNLSSHDLASPETVIAILAAV 502

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P RI L  +E+ +M + E ++  +  LR +GI + LDDFGT  S L+Y+  +P 
Sbjct: 503 RQSGLDPRRITLELTETALMRDFEGAQKAITLLRALGIKIALDDFGTGYSSLNYVHRLPL 562

Query: 879 DTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +   M         +++ +I+ + +N+    IA+ I     +  + R GC Y+Q 
Sbjct: 563 DRIKIDRGFMADVESDLGRSVVITILDLCQNLGLDGIAEGIETTEQLSAVRRHGCRYVQG 622

Query: 938 SHVASPLGFNSIL 950
             +  P+    +L
Sbjct: 623 YLIGVPMPMTDLL 635


>gi|24372139|ref|NP_716181.1| response regulator [Shewanella oneidensis MR-1]
 gi|24346032|gb|AAN53626.1|AE015501_9 response regulator [Shewanella oneidensis MR-1]
          Length = 575

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 211/437 (48%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + S E +   A  D+LT + NR  F   L   +      ++L   V+++D+D +K IN
Sbjct: 130 ALRNSHEKLKELAEHDSLTKLMNRYGFELCLNRAIARVKRSNDL-LAVILLDLDDFKAIN 188

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+  +L+  D++ARL G+ F +++   +        A  + K+
Sbjct: 189 DTLGHQTGDILLVKVASRLSTVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVANRLLKA 248

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
                 L + ++ + ASIG A +  +   SSE++K A++AMY AK  G N ++ +     
Sbjct: 249 FEEVFCLGDNDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALD 308

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+  L +A+  ++  + Y   +     ++VG+EALI+W HP+ G IS  +F+
Sbjct: 309 KEVRYRNHIESSLRIALRLNQFKVYYQVQVDAQTHQMVGMEALIRWLHPEDGLISPDQFL 368

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGMQA 816
            IAEE+ +++ I  ++L    R    W +Q         I +N+++  +   +L E +  
Sbjct: 369 PIAEEIGLMEEIGDWVLFETCRQAQYWLNQLAPTGHSFTIAVNLSASQIGHVDLYEKIAH 428

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T  +P  ++L  +E+ ++  P     +L ++ ++G+   LDDFGT  S L ++   
Sbjct: 429 VLKVTGLTPGALELEITENCLIEEPHEHAKILDKIAQLGVRFALDDFGTGFSSLEHIKLF 488

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      EK   +L +++  A     T +A+ I      +  T   C+ 
Sbjct: 489 PISVLKIDKSFIASYDKDEKDTRLLSALLNFAYGFNVTSVAEGIETLEQAEFCTVRHCNL 548

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL  +    
Sbjct: 549 LQGYLFSRPLEASEFEA 565


>gi|307293251|ref|ZP_07573097.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
 gi|306881317|gb|EFN12533.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
          Length = 647

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 210/439 (47%), Gaps = 11/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +        A  D+LTG+ NR +   RL   L      D     V  +D+D++K+IN
Sbjct: 199 EKSQLAIKFERLARFDSLTGVENRMAMQMRLRE-LFDGRRSDRDAMAVFWMDLDRFKEIN 257

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  +  R+   L     +AR  G+ F +I     +       A  +   
Sbjct: 258 DSLGHMIGDQLLCRVAERLSHALDGRGHVARFGGDEFVLICPG-ADRPAAEQIADDVMAE 316

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            A    +   ++ VTAS+G A        S E+L++A++A+Y AKH G N    F  S  
Sbjct: 317 FAHDFQVGGYQLGVTASMGIAVAPEDGQDSDELLQHADMALYQAKHAGRNRHAQFAWSMK 376

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++  L  A+ N EL L Y PI       I   EAL++WDHP  G IS +EF+
Sbjct: 377 ERQNRTYDLEMGLRCAMANGELMLHYQPIFDTETGRIAICEALMRWDHPTLGRISPAEFI 436

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI+ +  + LER  +D + W        + + +NI+   +  + L   +   +
Sbjct: 437 PIAESCSMIEPMTAWALERACQDAMEW-----DENVRVAVNISPVLIKSDGLPRAVITAL 491

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++     R++L  +ES+ + +  R+ L+L  L++IG+ L LDDFGT  S L YL    F
Sbjct: 492 MQSGLKARRLELEVTESIFLEDSGRTNLILSDLQRIGLRLALDDFGTGYSSLGYLRDYAF 551

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S M G     +  AI +S+  +A  ++   +A+ I  E  ++    MG   +Q
Sbjct: 552 DTIKVDQSFMRGVEGNSRHRAIAQSVAYLAHALDVETVAEGIETEDQLRCAREMGFTNVQ 611

Query: 937 DSHVASPLGFNSILKLLKE 955
              ++ P+    +L++++ 
Sbjct: 612 GFILSRPVPAAQVLEMMRR 630


>gi|89093356|ref|ZP_01166305.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
 gi|89082335|gb|EAR61558.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Oceanospirillum
           sp. MED92]
          Length = 580

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 223/439 (50%), Gaps = 19/439 (4%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A+ D LTG+ NR  F DRL   ++ +    N    ++ + +DK++ +N+  G   GD 
Sbjct: 142 QLAYYDPLTGLANRFLFKDRLQWAMEQA-ETQNSHVALLHLTLDKFRDVNESYGPRFGDR 200

Query: 591 VLVSLTRRIGELLKFPD------------ILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +L  +  RI + LK  D             +AR  G+ F ++L S       +  A  + 
Sbjct: 201 ILQVVADRIIDYLKHSDVIRRSGDEDVWRTIARTGGDEFSVLLASNR-IDDASYIAAGLV 259

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +I  P  L  ++  +T S G + + S   + +E++++A  A  +AK +GGN    +   
Sbjct: 260 DTINEPFLLDNQDCYLTLSAGISFYPSDASSINELVQHASNAAQYAKQQGGNRYRFYSEE 319

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + R   + + ++  L  A++  +  LV+ P +      + G+EAL++W+HP+ G I  + 
Sbjct: 320 ANRLLKENIYLQGQLRKAIKADQFELVFQPQVDSETHVLKGVEALLRWNHPERGYIPPAH 379

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I AI  ++ +++ +    WRDQ     I +  N++S  L    L   M+ 
Sbjct: 380 FIPLAEDAGLITAIGEWIFKQVCKQAAEWRDQFG-VDITVSTNLSSLQLNSPNLIASMKE 438

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I+++  +P  + +  +ES+ M + E + L+L ++  +G++L +DDFGT  S LSY+ ++
Sbjct: 439 SIAESGVNPESVVIEITESIAMADIENNLLILKQITDLGLALAIDDFGTGYSSLSYIKHM 498

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   VK +   + G       +AI+ +II MAK ++  ++A+ I  +     L   GCD 
Sbjct: 499 PVSEVKIDKIFVDGIPSDRGDVAIIDAIITMAKELDFRLVAEGIENQTQADYLKEKGCDV 558

Query: 935 IQDSHVASPLGFNSILKLL 953
           +Q  +   P+  N++ ++L
Sbjct: 559 LQGFYFYKPISKNAVEEVL 577


>gi|258514934|ref|YP_003191156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfotomaculum acetoxidans DSM 771]
 gi|257778639|gb|ACV62533.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Desulfotomaculum acetoxidans DSM 771]
          Length = 1021

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 223/548 (40%), Gaps = 24/548 (4%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              +    + D     +  +  +         LG +   +     N L  +     +  + 
Sbjct: 483  YKILSDCAHDFFLFINGNKKIIEANQAAVEALGYSRDDLLTLNINDLLAL-----EALKL 537

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
              +      +  + +E   +  D     + + +R     N  +  ++ +  DIT +K+  
Sbjct: 538  NKNQMEQAYQNGILFETVAKRKDGSTFPIEVNLRGTFIGNERV--FLSVGRDITNRKRFE 595

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            + +   A  D LT I NR S  + LT  +  +         +++ID+D +K +ND  G A
Sbjct: 596  QKLQYLASHDPLTNISNRYSLEEYLTRFVAKAKL--GRTGVLLLIDLDNFKMVNDTYGHA 653

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GD+VL++L   +   L+  D +AR  G+ F ++L +   +  +                
Sbjct: 654  AGDEVLIALVNTLRLNLREEDFIARFGGDEFVVLLDNTTVAEAMLIAEKLRNAVDNNAFC 713

Query: 647  LLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES----FRVSSF 700
            L   +    +T SIG          + ++L   + A+Y AK  G N ++           
Sbjct: 714  LCTFKTCFNLTISIGAVLI-DGNQDAQKLLSIVDAALYVAKESGRNSIKYLEADEFSKYV 772

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             ++   I   +  A+   +    Y P++++ +  I   EAL +        I    F+ +
Sbjct: 773  YAETNEIIGLIKQALREDKFISYYQPVVKIDNGTIAHYEALTRLIGKNREIILPGIFIPV 832

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AE   ++  I+ +++      ++        P I I INI+   L  + L E ++  I  
Sbjct: 833  AERYGLMPQIDQWVVRNSLAALVQ------NPEIKIFINISGMSLGQDTLLESIEKQIRD 886

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            +   P R+    +E+  + +  R+   + RL+K+G    LDDFG   S  SYL  +P D 
Sbjct: 887  SKIDPLRLGFEITETTAIKDLPRAERWIRRLKKLGCQFALDDFGMGFSSFSYLRVLPVDI 946

Query: 881  VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K +GS +    +   + AIL++II +A+ +    IA+ +  +  ++ L ++  DY Q  
Sbjct: 947  IKIDGSFIRDINDNPTQHAILQAIINIARTLGKKTIAEYVENKEILQSLHKLNIDYGQGY 1006

Query: 939  HVASPLGF 946
             +  P   
Sbjct: 1007 FLGKPAPE 1014



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 7/160 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I  +     F + +    ER       +   +   +     +        +L     
Sbjct: 220 IGIITDITELKQFERKLKQTAERFRSIYEDAAIGIAIVNEQGRFLQCNAQFQKMLAYNEN 279

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +   + +     H ND      +       RR   Q E R    D Q  W+ +    + 
Sbjct: 280 ELRDKLIS--DITHPNDISIMNFLYQELFSGRRMNYQTEKRYIRKDGQLIWVRLTASQVQ 337

Query: 504 NSNGDILRYIGIANDITEQKK-----SLEGILCNAFQDNL 538
            + G+    IG+A DIT+ K+       E     +  D L
Sbjct: 338 TAPGEPKLVIGMAEDITKHKQVEKALITERKRLFSLLDEL 377



 Score = 46.9 bits (110), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 3/139 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q            +      V+  DI              +G +   + G    ++   
Sbjct: 107 QQHQEDQLNFLQQLIDIIPSPVFFKDINGLYQGCNKAFENYIGHSREELLGKSAYYISPK 166

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           ++ D   +          +   + +E  +  AD+  H +II      ++   +   IGI 
Sbjct: 167 NLAD--KYLAKDKELFKNKGAEV-FESSILYADDSLHEVIINKAVYFDNENKVAGLIGII 223

Query: 517 NDITEQKKSLEGILCNAFQ 535
            DITE K+    +   A +
Sbjct: 224 TDITELKQFERKLKQTAER 242


>gi|197119194|ref|YP_002139621.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
 gi|197088554|gb|ACH39825.1| diguanylate cyclase/phosphodiesterase [Geobacter bemidjiensis Bem]
          Length = 523

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 220/452 (48%), Gaps = 9/452 (1%)

Query: 510 LRYIGIANDITEQKKSLEG--ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
              + + +D +E +       I   A +D LTG+ NRQ+F D L   ++           
Sbjct: 66  TVIVYLLSDKSEARHRAIESSIREQAIRDGLTGLYNRQAFDDFLAQSIEYVKRR-RESVA 124

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENN 626
           ++ +D+D++K +ND  G  VGD VL+   RR+ +  K   D++AR+ G+ F ++L   + 
Sbjct: 125 LLFLDLDRFKFVNDRRGHFVGDAVLIETARRLTDCAKRGEDLVARVGGDEFAMLLRHPDM 184

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  + +S++ P+ +    +  + SIG A + S      ++ K A+ A+  AK 
Sbjct: 185 PDGPGVVARRVLESLSAPVQVDGETLKTSVSIGIAMFPSDADDPMQLFKMADFALNQAKQ 244

Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           +G      +       R   + +++ L  A+   EL+LVY P +   +  ++G+EAL++W
Sbjct: 245 QGRATFCFYGGEWREERDHTLQLEQGLLRAINYDELFLVYQPKLDTSNMRVIGVEALVRW 304

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G +  + F+ +AE+  +I  +  ++L+        W        + + +N++   
Sbjct: 305 KHPHLGVLGPASFVPVAEKAGLIWPLTEWVLKNACSQAARWYRNEG-LDLNVAVNLSPSV 363

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
               +L E ++  ++ +   P R+ L  +E  +M     +  +L RL+++G ++ +DDFG
Sbjct: 364 FSHQDLEEVIEKALNDSKLPPDRLTLEITEQSLMIYETEALGVLERLQRMGTNIQIDDFG 423

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LS L +  F  +K + S ++   ++    AI  +I+ M+K ++   IA+ +  E 
Sbjct: 424 TGYSSLSSLKHYHFQALKIDKSFVSDVVTSSDDAAIATTIMFMSKCLDMEAIAEGVESEA 483

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             + L+ + C Y+Q  + + PL  + +   ++
Sbjct: 484 QKEFLSSIDCRYMQGFYFSRPLVASEMADFIR 515


>gi|121597227|ref|YP_990705.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei SAVP1]
 gi|124382915|ref|YP_001025187.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei NCTC 10229]
 gi|126443589|ref|YP_001064243.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 668]
 gi|126446173|ref|YP_001079541.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei NCTC 10247]
 gi|126455662|ref|YP_001077166.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106a]
 gi|134281712|ref|ZP_01768419.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|167003691|ref|ZP_02269476.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|167744368|ref|ZP_02417142.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 14]
 gi|167829912|ref|ZP_02461383.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 9]
 gi|167900013|ref|ZP_02487414.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 7894]
 gi|167908321|ref|ZP_02495526.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei NCTC 13177]
 gi|167916670|ref|ZP_02503761.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 112]
 gi|167924517|ref|ZP_02511608.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei BCC215]
 gi|226199199|ref|ZP_03794759.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pakistan 9]
 gi|237509511|ref|ZP_04522226.1| sensory box/ggdef/eal domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|238563242|ref|ZP_00439215.2| sensory box/ggdef/eal domain protein [Burkholderia mallei GB8 horse
           4]
 gi|242312393|ref|ZP_04811410.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106b]
 gi|254177185|ref|ZP_04883841.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei ATCC 10399]
 gi|254182435|ref|ZP_04889029.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1655]
 gi|254186989|ref|ZP_04893504.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203608|ref|ZP_04909969.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|254205475|ref|ZP_04911828.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|254265017|ref|ZP_04955882.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1710a]
 gi|254296624|ref|ZP_04964080.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 406e]
 gi|254356189|ref|ZP_04972466.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|121225025|gb|ABM48556.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei SAVP1]
 gi|126223080|gb|ABN86585.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 668]
 gi|126229430|gb|ABN92843.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106a]
 gi|126239027|gb|ABO02139.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei NCTC 10247]
 gi|134246774|gb|EBA46861.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|147745847|gb|EDK52926.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|147755061|gb|EDK62125.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|148025172|gb|EDK83341.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|157806426|gb|EDO83596.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 406e]
 gi|157934672|gb|EDO90342.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pasteur
           52237]
 gi|160698225|gb|EDP88195.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei ATCC 10399]
 gi|184212970|gb|EDU10013.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1655]
 gi|225928606|gb|EEH24633.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pakistan 9]
 gi|235001716|gb|EEP51140.1| sensory box/ggdef/eal domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|238521118|gb|EEP84572.1| sensory box/ggdef/eal domain protein [Burkholderia mallei GB8 horse
           4]
 gi|242135632|gb|EES22035.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106b]
 gi|243060830|gb|EES43016.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|254216019|gb|EET05404.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1710a]
 gi|261827038|gb|ABM99067.2| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia mallei NCTC 10229]
          Length = 872

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 644

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 866


>gi|260464385|ref|ZP_05812576.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259029855|gb|EEW31140.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 690

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 210/450 (46%), Gaps = 7/450 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I     E   +   +   A  D LTG+ NR    D   T++  +      R  V+ +D+
Sbjct: 230 AILRKTHELVDARNSMAFIAVHDGLTGLHNRTFLTDHFETLIKGAHRR-RERLAVVQLDL 288

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K+IND LG A GD VLV   +R+ +  +  D+ ARL G+ F +IL    ++  I   
Sbjct: 289 DRFKQINDTLGHAAGDYVLVITAQRMRDSCRASDLCARLGGDEFVMILNGAGSTEDINML 348

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   I  PI      I   AS G A +      + ++L +A+LA+Y AK  GG +  
Sbjct: 349 ARRILAHINEPIIFQGTTILPGASAGIAVYPIDADNAQDLLVHADLALYSAKKMGGGNFS 408

Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F     R    R  ++ D+ +A+      + + P + L    I G+EAL++W+H + G 
Sbjct: 409 FFSEELRRELDYRKQLEHDIKVAISEKAFQVYFQPQVSLTTGTISGIEALVRWNHAERGM 468

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ +AE+   +  I   ++ +   +   W          + +N++  +L +++  
Sbjct: 469 ISPGEFIPVAEKCGFMPEIGRIVISKAINEAAEWNRAGIAFG-RLAVNVSGTELREHDFD 527

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLL 870
             +   + K    P ++ L   ESV++ + +      L  +R  G+ L LDDFGT  + L
Sbjct: 528 AFLFGTLEKAGLPPQKLSLEIVESVILDDEKTGIAAKLRHIRAAGVHLELDDFGTGYASL 587

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S++     D +K +   +    E      I+R+I  +A+ +  +I+A+    E ++  L 
Sbjct: 588 SHVNPNEIDRLKIDRRFVQNIHENGDNSKIVRAITELARGLGISIVAEGAETEAELDSLM 647

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +GCD +Q   +A P+  +  L+ L  R P
Sbjct: 648 AIGCDQVQGYSIAFPMPQDKALEWLTARMP 677


>gi|239626686|ref|ZP_04669717.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516832|gb|EEQ56698.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 855

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/559 (20%), Positives = 227/559 (40%), Gaps = 22/559 (3%)

Query: 403 DGERQSLAVLGSG-DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           D E    A+  S  D ++  D+          +    GL    +      W   IH +D 
Sbjct: 308 DNETFYQALTASTEDYIFVGDMGTGVFHYPQAMVDEFGLPGQVVKNAAAFWGGLIHPHDE 367

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             F     +    R      E+R R    ++ W+  R + +   +G    + G+  ++ +
Sbjct: 368 AYFLESNQNIADGREDYHNIEYRARNVKGEWIWLRCRGKMVKKQDGTPGLFAGMITNLGK 427

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +           D++TG+ N+  F   +   L      +     +M++D+D +K IND
Sbjct: 428 RNRI----------DHMTGLYNKYEFEGDIKKYLVD--HTEVDTIGIMILDLDSFKNIND 475

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           +   + GD+VL    +++  +L     L RL G+ FG++ +          FA  +++  
Sbjct: 476 LYDRSFGDEVLRITAQKVSSMLPANAKLYRLDGDEFGVLCLGCGEEEGWDIFA-KIQQVF 534

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   R+   T S G+ ++        E+LK A  ++ H+K  G N +  F      
Sbjct: 535 HKQQEYSGRKYYCTISAGYTTYPKDGDNYLELLKCANYSLEHSKLMGKNRMTVFSKDILD 594

Query: 702 SDRVMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                ++  E L  +++       + Y P +      + G EAL +W   K+G+IS  EF
Sbjct: 595 RRERRLELVELLRESIDRGFAGFSIHYQPQVDTRTGSLQGAEALARWHCSKYGDISPGEF 654

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+  MI  +  ++    A     W     MP   + IN++   L ++++   M+  
Sbjct: 655 IPLLEQSGMIINLGRWIFCHAAAQCREWCR--YMPDFQMSINLSYVQLAEDDIIPYMEDT 712

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS + +  +E+ +      +  +L  ++  GI + +DDFG   S L  L  IP
Sbjct: 713 LKELDLLPSHVVMELTETYLATADGETLKMLNDMKATGIRVAMDDFGVGYSSLFSLKTIP 772

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK +   + G T        +RSI  +  ++   +  + +    + + +  +G ++I
Sbjct: 773 VDIVKIDRGFVKGITSDLFNATFIRSITELCHDVGKQVCLEGVESGDEYQAVRELGMEHI 832

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  +   P   +   + LK
Sbjct: 833 QGFYFGRPETPDVFERRLK 851



 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 29/289 (10%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGS-------MHGPIRNWLPYIHI 458
            ++ +      ++  D   D +      +    GL           +   +     + HI
Sbjct: 14  LAMILDQMHSNIYISDTETDEILYMNQTMKKAFGLEDPEGKCCWKVLEKGMERRCEFCHI 73

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +         +S            +  +  D+   W           NG I        D
Sbjct: 74  DLLKKGEEGNESSWRENNALTGRSY--QNYDSLIRW-----------NGRIYHIQNSV-D 119

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE     + +  +A  D LT + NR+   +RL   ++ +  ++ +   V+  DI++ K+
Sbjct: 120 VTE----YDKMFYSARMDELTQMLNRRGGNERLVQTIEQAERENQILTLVLY-DINELKR 174

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G + GD +L  +     E L   D + RLSG+ F ++     +  ++ +    + 
Sbjct: 175 VNDQYGHSAGDALLRYVASITKEGLGRLDFMFRLSGDEFVMLFYG-RSKAEVEESMKRIL 233

Query: 639 KSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKH 686
                    L+ +  V  S G    +     +  E++  A+  MY  K 
Sbjct: 234 LRARQDRERLDVDYGVPFSYGLTEIYPGENSSIDEIIARADEQMYIQKR 282


>gi|332532108|ref|ZP_08407991.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038449|gb|EGI74893.1| GGDEF/EAL domain protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 467

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 204/436 (46%), Gaps = 9/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   +  D LT + NR +F   L       A +      ++ +D+D +K+IND L
Sbjct: 35  QRTEEIYRLSNTDPLTNLLNRTAF---LKNANRQLADNPQEPFALLFVDLDGFKQINDSL 91

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL  + RRI  +        R  G+ F +IL +     ++ +FA  + +SI  
Sbjct: 92  GHKVGDKVLKEIARRISNVCNQQLFKCRWGGDEF-LILATYQKQAELIEFADRVLQSIGA 150

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                + +  V+A+IG A +       + ++++A+ AMYH K     ++  +  S     
Sbjct: 151 EHETYKYQKWVSATIGIAMYPEHGSDFNTLIRSADTAMYHQKRMAKGNINIYNDSLKLIQ 210

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                + + L  A+E + L LV+ PI+     ++   E+L++W      NI   EF+ IA
Sbjct: 211 EREYLLSQRLASAIEENSLRLVFQPIVDSKTSKVTSFESLLRWQL-DGENIFPDEFIAIA 269

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  + ++++E+              P I I +N++   L D +    +  ++++ 
Sbjct: 270 EQYGLITELGIWVIEQACIQATKL--SHLQPQIAISVNVSVIQLQDPDFVSKVLKIVNRH 327

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + +  +ESV   +       +  L+K G  +++DDFGT  S LS +  I  D V
Sbjct: 328 RVEPKNLHIEITESVFAEDKLTFLTAVKALQKQGFCISIDDFGTGYSSLSSMLDIGVDIV 387

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +    ++ ++I+ +I+ MA  ++ T++A+ +        LT++G  ++Q  + +
Sbjct: 388 KIDRSFIQNMDKRGLSIIHAIVQMASTLDFTVVAEGVETIEQANTLTKIGVSHLQGYYFS 447

Query: 942 SPLGFNSILKLLKERF 957
            P+    +   L E+ 
Sbjct: 448 KPMEVGFVDAYLNEQN 463


>gi|167851372|ref|ZP_02476880.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei B7210]
          Length = 872

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 644

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 866


>gi|167821571|ref|ZP_02453251.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 91]
          Length = 872

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLTKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 644

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 866


>gi|167755231|ref|ZP_02427358.1| hypothetical protein CLORAM_00736 [Clostridium ramosum DSM 1402]
 gi|237734979|ref|ZP_04565460.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705281|gb|EDS19860.1| hypothetical protein CLORAM_00736 [Clostridium ramosum DSM 1402]
 gi|229381755|gb|EEO31846.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 844

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/555 (20%), Positives = 239/555 (43%), Gaps = 22/555 (3%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +     +  + D ++  ++       +P    +  L    +  P+  W   +H  D + F
Sbjct: 305 QLYEALIKSTDDFIYICNMKTGIFRYSPAQVKVFNLPGEIIDHPLPFWKAIVHPQDWERF 364

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                +    +      EFR   +D ++ W+  R + M +  G+   + GI   +  Q K
Sbjct: 365 YKSNMAIGENKMDYHSVEFRAMNSDGEYIWLKCRGQLMRDEFGEPNLFAGIMTQLDRQNK 424

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                      D LT + NRQ F           A D      +MVIDID +K IN++  
Sbjct: 425 I----------DPLTHLYNRQEFAKAFELKTKDKAID---NLGIMVIDIDDFKNINEIYD 471

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + GD ++ ++ +    +L     + +L  ++ G+++ +      I      ++K +   
Sbjct: 472 RSFGDFIIKTVAQLTQAVLPGNTSIYKLDSDQMGLLIENSTELE-ITKLYNEIQKQLLHE 530

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L   +  +  S G A +    +T +E+ K A+ ++ +AK  G N +  F         
Sbjct: 531 QLLKRYKCPIQISAGCAIYPKDGLTYNELNKYADYSLQYAKDNGKNKLTFFSNYILEHKM 590

Query: 705 VMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             ++  + +  +V +      L Y P + +  ++I G+EAL++W   + G +S  EF+ I
Sbjct: 591 RSLEILKYIRESVSDDYRGFELNYQPQVEVSSKQIKGVEALLRWQCQELGKVSPVEFIPI 650

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE  +I  + L+++++  +    W      P   + IN+++  +L+++  + ++ ++ K
Sbjct: 651 LEESGLIIPVGLWVIKKAIQACSKW--VVYDPEFSVSINVSALQMLNSDFVKDVKKVLKK 708

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +P  I L  +ES ++ N +  R +  +LR++G  + +DDFGT  + L  L  +P D 
Sbjct: 709 EKLAPKNIVLELTESYMVRNMDLLRTIFEQLRELGFKIAMDDFGTGYASLEILKTVPADI 768

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + + +     ++     +R I  +  +++  ++ + I  E +   +  M  DYIQ  
Sbjct: 769 VKIDQTFVRDIKISKFDKTFIRFIAQICHDVDIEVLLEGIETEEEFNVVEPMELDYIQGF 828

Query: 939 HVASPLGFNSILKLL 953
               P     I   L
Sbjct: 829 LFGRPQSEEEITNKL 843



 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 8/207 (3%)

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            +D            +   NG I+       DIT+     E +   A  D+L G+ NR++
Sbjct: 83  NSDLTNRIFENYDSLIKWENGKIVHMQQSI-DITD----SEILSHQASIDDLCGLLNRRA 137

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             ++L   +           T+ ++DI+  K++ND  G   GD +L  +   + + L   
Sbjct: 138 GKEKLLEFMVKKKKA-KESFTIALLDINNLKRVNDSFGHQEGDFLLKQIAYAVKQDLDKE 196

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA-SWTS 665
           D++ RL G+ F ++   +N       F I  +K+I     L  +    + + G      +
Sbjct: 197 DLIFRLGGDEFVLVFGHKNTKDSA-KFLIENQKNIQKLQALYNKPYGFSYAFGMYTVLPT 255

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHV 692
           +K+T ++++  A+  MY  K R     
Sbjct: 256 NKLTVNDVITRADEQMYQEKLRYRRTQ 282


>gi|254228517|ref|ZP_04921942.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262392724|ref|YP_003284578.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|151938899|gb|EDN57732.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262336318|gb|ACY50113.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 1041

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 133/759 (17%), Positives = 268/759 (35%), Gaps = 36/759 (4%)

Query: 220  PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279
                + W +     +   F +K +          R        S  ++   + L    + 
Sbjct: 297  YQAVVRWGLGAEQEVSAVFFNKPMKFSERFAKEIR-----LFGSLFVVMSVVILLMGYYL 351

Query: 280  AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
             ++     +     AIL  +          +    +      +   ++YH     +R + 
Sbjct: 352  QRIRRSESAARESQAILESIFDQSMQYMGILDANGVLKSGNDHLQSLLYHQGLRLDRPLW 411

Query: 340  LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF--------------T 385
              P W       +  +        +             +V+ I                 
Sbjct: 412  FHPNWSEKAQSLLEAYFHAPHHQVSTFEAEIWSKEHGTLVLEISLKPFSQQVGNQNQYLF 471

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              + + +       ++               ++   D              +LG     M
Sbjct: 472  EARDITSRKLMEDKLYQRESTLRNYYEQQPVMMVTLDSNNRIQEVNRFAQLLLGYKPMDM 531

Query: 446  HGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
             G       +   +D+  F R +L        G  + E   R A+    W+   IRP+S 
Sbjct: 532  LGHRLREFYF---DDKVLFPRQVLLQPNQQVHGVWRREVEYRHANGHRVWVRENIRPLSE 588

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            S+    + + +  DITE K+  E +   A  D LTG  NR  F   L T L    +   +
Sbjct: 589  SD----QLLIVGEDITETKQLSEKLEYQARYDLLTGTYNRNHFELELKTALREVDSHRRV 644

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
               ++ +D+D+ K +ND +G   GD  +      + E+L +  ILAR+ G+ F ++L   
Sbjct: 645  H-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNSILARMGGDEFAVLLKDC 703

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +    I    + +           +  + ++ SIG      +  T   +   A+ A + A
Sbjct: 704  DEYGAINIAKLIISTLSEHLFIWEDTRLFISCSIGIRIIDHTAETPQMVHAQADSACHAA 763

Query: 685  KHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIR-LMDEEIVGLE 739
            K +G N    F + +    R  ++      +  A+ N  L L   PI      +  +  E
Sbjct: 764  KEQGRNRYNLFSLDNEELQRRQMEMQSVNLVHEALSNQRLELFAQPIKSLQQHDAQMYFE 823

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             L++  +     +S + F+  +E   +   I+  ++ +         +          IN
Sbjct: 824  ILVRIRNGYGDYVSPALFIPASERYNIAHWIDKQVITQTLEWFEQRPEVVEKLG-RCSIN 882

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++ + + + E  + +   + ++     +I L  +E+  M N E++  L  +L+ +G  + 
Sbjct: 883  LSGQSMGNQEFIDFLLERLERSSMPCEKICLEITETAAMSNLEQAIELFTKLKALGCMIA 942

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
            LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A+ 
Sbjct: 943  LDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDINVNEMDRVMVRSINDLAKQLGKVTVAEF 1002

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  E  ++ L  +G DY Q   +  P   + +++ L   
Sbjct: 1003 VENEQVMQHLIDLGVDYGQGYGIGHPQPLSELVERLTAE 1041


>gi|115523502|ref|YP_780413.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115517449|gb|ABJ05433.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris BisA53]
          Length = 830

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/440 (28%), Positives = 217/440 (49%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++    +   A  D++TGI NR SF  RL      +   D     V+ +D+D +K +N
Sbjct: 372 QLQRESALVAQLASLDSMTGIANRASFHARLAAAFAAAQRADG-HFAVLCLDLDHFKDVN 430

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L    +R+  ++   D++ARL G+ F +++    +   IA  A  +  +
Sbjct: 431 DTLGHPIGDRLLQIAAQRLTRVVSHDDVIARLGGDEFALLIFDVCDREVIAGIATRIANA 490

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +     L    + VTASIG + +  +  +  +M+ +A+ A+Y AK  G N          
Sbjct: 491 LNESYELDGNIVRVTASIGISVFGPAAASPEDMMIHADQALYRAKADGRNGYYFHCAELD 550

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +RV + E L  A+ N E  L Y P + +   +I GLEALI+W HPK G +    F+
Sbjct: 551 HEVRERVTVNEQLQAALRNHEFVLHYQPQVEIPSGKIDGLEALIRWQHPKRGLLYPGAFL 610

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQAL 817
            IAE   MI  +  F+LE   R I  W+ +   PP  + INI++  L     L + +  +
Sbjct: 611 AIAETTGMIAPMGRFVLEEACRQIKRWQAEGLDPP-PVAINISAAQLKGAVPLDQELAEI 669

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P+RI++  +E  ++ + + +R  + R+R++GIS+ +DDFGT  S L YL    
Sbjct: 670 LARHEVDPARIEIELTEFALVESTKANRDQIKRVRELGISVAIDDFGTGYSSLEYLRAYR 729

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K     MT         AI+R+ + +A+ +    IA+ +     +  L   GC ++
Sbjct: 730 VNRLKIPQQFMTQVAIEAGDAAIVRAALVLARELGMNAIAEGVETPEQLAFLLASGCHHV 789

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + PL    +  LL+ 
Sbjct: 790 QGYYFSKPLTVEDLRPLLQA 809


>gi|148974874|ref|ZP_01811854.1| Predicted signal transduction protein [Vibrionales bacterium
           SWAT-3]
 gi|145965383|gb|EDK30632.1| Predicted signal transduction protein [Vibrionales bacterium
           SWAT-3]
          Length = 766

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 205/436 (47%), Gaps = 10/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++   +L  A  D LT +PNR      +   +      ++ + +++ IDID +K +ND
Sbjct: 325 EQRTRSQLLYQANHDPLTTLPNRLYMRKNIDKWVA----SESEQFSLLFIDIDNFKCVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +  R+        +L R S + F + L    +  +I   A  + + +
Sbjct: 381 THGHDFGDKVLKQIALRLMRFRSRLSLLVRESSDEF-LFLTPITSESEIKRLAERIIEVL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
           + P  +   +  +  SIG A +         +L++A+++MY AK +     + +  +   
Sbjct: 440 SHPYEVQNSQFLLGCSIGIARFPEHGKDLDSLLRSADISMYKAKQQQNSYSIFTTAMQDA 499

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ +++ L +A+E   L++ + P++R  DE I G+EAL++W   + G +    F+ +
Sbjct: 500 HLYKMKVEQRLRIAIEKQTLFMAFQPLVR-ADESIDGVEALVRWVDDELGFVPPDVFIPV 558

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   ++  +  F++E     I           I + INI+ +        E + + + K
Sbjct: 559 AESTGLMHKLGTFIIESSIMQIAHLHRTT-DQEIGLSINISVRQFSHKSFSEHLLSTLEK 617

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +SPS + L  +ES+ + +    + +   L++  I ++LDDFGT  S LS L  +P D 
Sbjct: 618 YQFSPSCLTLEITESLFIEDVTLVKPIFEGLKENNIKISLDDFGTGYSSLSMLKALPIDE 677

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      + +  ++++II + KN    ++A+ +        L   GCD +Q  
Sbjct: 678 LKIDKSFIENIAVDQQSLTMVQNIIAIGKNFGMVVLAEGVESNEHFAILKACGCDLMQGY 737

Query: 939 HVASPLGFNSILKLLK 954
           + + P+ +  + + L 
Sbjct: 738 YFSRPIPYEELCEYLA 753


>gi|304310543|ref|YP_003810141.1| hypothetical protein HDN1F_09010 [gamma proteobacterium HdN1]
 gi|301796276|emb|CBL44484.1| hypothetical protein HDN1F_09010 [gamma proteobacterium HdN1]
          Length = 700

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 212/438 (48%), Gaps = 10/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++ +   +   +  D LT +PNR  FL RL  +        +    +  I +D +  +N 
Sbjct: 242 RRLAEANVERLSNYDTLTELPNRSLFLKRLDAL--NQPLTSDHYSALFYIGLDDFSSVNL 299

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           +     GD VL +L  R+ +      +L R  G++F I +   +      + A A+   +
Sbjct: 300 LHSYRTGDRVLTTLADRLRKSTPDQALLMRAGGDQFCIAIRGTSEPQ-ARELAHALLALV 358

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             P +     +T++A++G A +         +LK AE AM   K  GGN ++ +    + 
Sbjct: 359 QQPFSGESTPLTLSATVGVAFFPRDAKAPELLLKKAEEAMRLGKSAGGNSIQFYSEIENH 418

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +     ++ DL  AVE+S+L L++ P I L   +IVG+EAL++WDHP+ G IS  EF+L
Sbjct: 419 RQKASKQLERDLLTAVESSQLSLMFQPQIDLASGQIVGVEALLRWDHPQRGLISPDEFIL 478

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE    +  I  ++L+   + +  W      P + + IN+++  L    L   +  +I+
Sbjct: 479 LAESNRAVIPIGHWVLKNACKTLAEWHKA-GYPDLGMSINLSAIQLHHPPLASDLAHIIT 537

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ +    +ES VM N E +  +L  +RK+G+ L +DDFGT  S LSYL  +P D
Sbjct: 538 EYGLPPASLTFEITESSVMENIEHAIDVLKNIRKLGVHLAIDDFGTGYSSLSYLRRMPID 597

Query: 880 TVKFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            VK + S        +    + I+ ++I +  ++   I+A+       ++ L R GCD  
Sbjct: 598 EVKLDRSFFLDLDRDTHADSVKIIEAVIRLGHSLGLEIVAEGTESAAHVELLQRCGCDRS 657

Query: 936 QDSHVASPLGFNSILKLL 953
           Q  + + PL  +  L L+
Sbjct: 658 QGFYYSEPLEADKFLALM 675


>gi|330939654|gb|EGH42958.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 557

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/532 (20%), Positives = 219/532 (41%), Gaps = 14/532 (2%)

Query: 424 VRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQY 481
               V   P    +    S    G P+      +  ND+ +  T+++  +  + +G    
Sbjct: 1   AGAIVYMNPAAEGLTHWKSTQASGLPLAALFNLLDENDQKDQSTLVEQIITGKLKGGSAN 60

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              ++  D     + +   P+  + G I   + + +D+T++++ +  +   A  D LTG+
Sbjct: 61  SKLIQRLDGSTVSVALVGTPIY-TEGVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGL 119

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR  F  RL  +LD           +M +D+D++K +ND  G A GD++L  L R + +
Sbjct: 120 VNRSEFERRLQRVLDEDCGQGRSHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQ 178

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L+  D LARL G+ FG++L+       +            +      R    T SIG  
Sbjct: 179 GLRDGDTLARLGGDEFGVLLVDCPAETALDIAEALREAVQRLHFMWKGRPFMATVSIGLV 238

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVEN 717
               +  +    L  A++A Y AK RG N V+++ V       R   +   + L +A++ 
Sbjct: 239 HLGDTPASLEGSLSAADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHMAMDE 298

Query: 718 SELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +   L    I  +     E+  +E L++        +    F+  AE   ++  ++ +++
Sbjct: 299 NRFCLYAQEIASIKGEAGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDRWVV 358

Query: 776 ERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
             + + I   +       P     IN++   + D+   E ++        SP  I    +
Sbjct: 359 HNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKQQFETFAVSPGMICFEIT 418

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +     
Sbjct: 419 ETSAIADLQSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPMDFLKIDGSFVKDMLD 478

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 479 NPINKAMVEVINNIGHVMGKRTIAEYVETPQIEAALQEMGVDFAQGYLISRP 530


>gi|288555610|ref|YP_003427545.1| sensory box/GGDEF family protein [Bacillus pseudofirmus OF4]
 gi|288546770|gb|ADC50653.1| sensory box/GGDEF family protein [Bacillus pseudofirmus OF4]
          Length = 573

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/569 (22%), Positives = 235/569 (41%), Gaps = 45/569 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTIL 468
           A+  +  IV   D              I    S  + G     +    H  D   F+ + 
Sbjct: 17  ALNQTA-IVAITDTNGVITFVNDKFCEISKYTSDELIGRTHRIINSGYH--DESFFKRMW 73

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           ++         + E + +A D   +W+   I P  N  G+  +Y+ I  +ITE+K   E 
Sbjct: 74  ETIKKGET--WKGEIKNKAKDGSHYWVDTAIVPFMNLEGEPYQYVAIRYNITERKALEEK 131

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            L    +D +TG+ N   F  ++  ++ + A        ++ I+ID +K IN+ LG+   
Sbjct: 132 QLQRMIEDPVTGLSNFSHFESKVQQMILMEAE-----FHLLYINIDHFKGINESLGVYQA 186

Query: 589 DDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           + +L  +  RI   L     +++R+ G+ F I+L    ++  I      +      PI  
Sbjct: 187 NQILKLVGDRIKGALNEIEAVISRVHGDEFAIVLP---SAAPINQIVDTLHTYFKEPIVH 243

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
           L     +T SIG  ++ +      E++++A  A+  AK  G N   SF      +    +
Sbjct: 244 LHHSYYMTLSIGLTAFPALSSNFQELMQSAFYAVNQAKSTGKNTCVSFHQDMNVNINRKL 303

Query: 708 K-------EDLCLAVENS-------------------ELYLVYHPIIRLMDEEIVGLEAL 741
           +         L  A  N                    +  + Y P +     EI+  EAL
Sbjct: 304 EMKNCMHQSILNKAEMNKMDMNKTDLTKADIKTDQPKDFIMHYQPQVN-RKGEIISFEAL 362

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W  P +G +S +EF+ +AEE  +I  +   + E + +D+   +       I +  N++
Sbjct: 363 VRWHSPVFGAVSPAEFIPLAEETGLIVPLGYVLFEEVLKDLSILKKAYGDT-IQVGFNLS 421

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K      L + ++ L ++       IK+  +ES+   +P+    L+ + R  G+ + LD
Sbjct: 422 LKQFFYPPLLKRLKELCNQYGVRSQNIKIEITESISAKSPKEVIHLMKQFRDFGMEIELD 481

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S + +L   P   +K + S +   T   K  A++ S++ +A+ +E  +IA+ I 
Sbjct: 482 DFGTGYSSMQHLKNFPITCLKIDQSFVRDITHCSKTQALVNSMLYLAQELELDVIAEGIE 541

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                + L + GC   Q  +   P    +
Sbjct: 542 TLAQYEYLLQKGCSCFQGYYFGKPQAIQA 570


>gi|310657975|ref|YP_003935696.1| hypothetical protein CLOST_0665 [Clostridium sticklandii DSM 519]
 gi|308824753|emb|CBH20791.1| exported protein of unknown function [Clostridium sticklandii]
          Length = 759

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 206/440 (46%), Gaps = 15/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K   E I   A +D LT + NR+     L   +           T+++IDID +K IN
Sbjct: 325 EIKNQEEYIRFLAERDFLTDLYNRRKLSMNLEEGIK-----SGKNGTIILIDIDDFKNIN 379

Query: 581 DVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D LG   GD VL  ++R +  +         R+ G+ F + +    +  ++  F   + +
Sbjct: 380 DTLGHYYGDKVLKYVSRLVSSITFFEEYTPYRIGGDEFVLHIPGAFSESQMKTFISYLFE 439

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +      +   + T+TAS+G   +     +  E++  A+LAMY+AK +G N    F  S 
Sbjct: 440 TFGKTHYIDNIKNTITASLGVVRYPEDANSVDEIIMKADLAMYNAKKQGKNRYCYFEQSM 499

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 ++ I+++L  AVEN+  YL+Y PI+  M       EALI+        I  + F
Sbjct: 500 IESFDWKISIEKELREAVENNLFYLMYQPIVDAMTGRFKYFEALIRIKDSN---IPPNIF 556

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  +++E     I  W +   +    I +N++   + D EL   ++  
Sbjct: 557 IPVAEETGLILKIGRWVMEEAMAQIKIW-ENMGLENRKISVNVSPMQIQDYELISFLRDE 615

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P+  ++  +ESV++ N E +  +L  ++++GI + LDDFGT  S LSYL YIP
Sbjct: 616 LIKNNVDPADFEVEITESVLLENREHNIKVLENIKELGIKIALDDFGTGYSSLSYLTYIP 675

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + SL      +     +++ +I +   ++  ++ + +    + + L     DY+
Sbjct: 676 VDKIKLDKSL-KDRFLSLDNSQVIKGLISLCHGLDLKVVVEGVETLDESENLKIQNVDYL 734

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + P+        ++ 
Sbjct: 735 QGYYFSKPMKKEDATLYIEN 754


>gi|320158770|ref|YP_004191148.1| putative signal transduction protein [Vibrio vulnificus MO6-24/O]
 gi|319934082|gb|ADV88945.1| predicted signal transduction protein [Vibrio vulnificus MO6-24/O]
          Length = 461

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 220/442 (49%), Gaps = 8/442 (1%)

Query: 519 ITEQ--KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           I+++  K+    +   A +DNLT + NR +    +   L+  A D +   +V+ ID+D++
Sbjct: 10  ISKRLAKEKNRTLAKQAVEDNLTRLYNRHALNTYINKKLEKLAKDPDEAFSVLFIDLDRF 69

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND +G  +GD VL  +  R+    +  D   R  G+ F I L   +N   +A  A  
Sbjct: 70  KVINDSMGHLIGDLVLKQVASRLLLNARKQDSCYRFGGDEFVICLPGLHNQETLARIARR 129

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVES 694
             + I  P N+ E+   +  S+G A+   S  T +++L+ A+ AMY AK           
Sbjct: 130 YAELICEPYNIEEKICQIGVSVGIATVADSSYTLAKILREADTAMYRAKKSEDSKVVFFD 189

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +    + R   +++L  A+E  +L+L Y PI     EE++ +E L++W HP  G IS 
Sbjct: 190 NDMFVQATKRFTFEQELSFAIEREQLHLKYQPIFSNDGEELISVEVLLRWYHPDNGWISP 249

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEG 813
           ++F+ IAEE  +I  I  +++ER    +    ++     +    IN+++K  ++ ++   
Sbjct: 250 ADFVPIAEEAGLINKIGDWVIERTCHIVAQLSERYCAQELPRFNINVSAKQFINGQVLYS 309

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + + +++       I +  +E+ ++ + + +  +L +++ +GI+++LDDFGT  S L+ L
Sbjct: 310 LNSHLARFACPAELIGIEITETSLLSDSKATIDVLNKIKALGITISLDDFGTGYSSLAML 369

Query: 874 GYIPFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
              P D VK + S +        +   +  +II MA  I+ +++A+ +     +K L   
Sbjct: 370 NQYPIDVVKMDRSFVKHVDDVHHRSAQLCFAIINMAHTIDLSVVAEGVETLEQLKILKTF 429

Query: 931 GCDYIQDSHVASPLGFNSILKL 952
            CDY+Q    A P+    + +L
Sbjct: 430 HCDYVQGYLTAKPMNLEELEQL 451


>gi|218676260|ref|YP_002395079.1| putative signal transduction protein [Vibrio splendidus LGP32]
 gi|218324528|emb|CAV26010.1| putative signal transduction protein [Vibrio splendidus LGP32]
          Length = 795

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 207/436 (47%), Gaps = 10/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++   ++  A  D LT +PNR      +   ++    D++   +++ IDID +K +ND
Sbjct: 353 EQRTRSQLIYQANHDPLTSLPNRSYMRKNIGKWIE----DESEPFSLLFIDIDNFKCVND 408

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +  R+        +L R S + F + L   ++  +I   +  + + +
Sbjct: 409 THGHDFGDKVLKQIALRLMRFRSRVSLLVRESSDEF-LFLTPLSSESEIKRLSERIIEVL 467

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P  +   +  ++ S+G A +         +L++A+++MY AK +  ++          
Sbjct: 468 SQPYEVESAQFLLSCSVGIARFPDHGRDLDSLLRSADISMYKAKQQQNSYSIFTTEMQDA 527

Query: 702 S-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ +++ L +A++   L++V+ P++R  DE   G+EAL++W   + G +    F+ I
Sbjct: 528 HLYKMRVEQRLRIAIDKQALFMVFQPLVR-ADESTHGVEALVRWVDDELGFVPPDVFIPI 586

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   ++  +  F++E     I           I + INI+ +        E +   + K
Sbjct: 587 AESTGLMHKLGTFIIESSVMQIAHLHR-TIEQKIGLSINISVRQFSHKSFSEHLFTTLEK 645

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +SPS + L  +ES+ + +    + L   L++  I ++LDDFGT  S LS L  +P D 
Sbjct: 646 YQFSPSCLTLEITESLFIEDVAIVKPLFEALKENDIKISLDDFGTGYSSLSMLKALPIDE 705

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      + +  ++++II + KN    ++A+ +        L   GCD +Q  
Sbjct: 706 LKIDKSFIENIAVDQQSLTMVQNIIAIGKNFGMVVLAEGVESNEHFAILKACGCDLMQGY 765

Query: 939 HVASPLGFNSILKLLK 954
           + + P+ ++ + K L 
Sbjct: 766 YFSRPIPYDELCKYLT 781


>gi|84385838|ref|ZP_00988868.1| hypothetical protein V12B01_12465 [Vibrio splendidus 12B01]
 gi|84379154|gb|EAP96007.1| hypothetical protein V12B01_12465 [Vibrio splendidus 12B01]
          Length = 824

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 216/436 (49%), Gaps = 10/436 (2%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE+KK+ +     A  D LT + NR     +L   +  S  + N    +  +DID++K
Sbjct: 378 DLTEEKKNFD---FLAHHDPLTSLANRLLATKQLDEEIRKSYEN-NASFLLFYLDIDEFK 433

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG A GD++LV++   +  L+     +AR+ G+ F ++  +     +    A  +
Sbjct: 434 TINDSLGHAPGDNLLVNVGHILSNLVGDKGFVARMGGDEFLVVYSNIG-LDEGEPIADRL 492

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +++  P  + +  I V+ASIG   + +  +    +++NA+ AMYHAK  G +    +  
Sbjct: 493 NQALRKPYYIDDNSIFVSASIGVCEYPTHGLDRETLIRNADTAMYHAKRNGRDQYRVYAD 552

Query: 698 SSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   +I+ +  L  A+ N EL + + P + L  ++I+G EALI+W HPK G +   
Sbjct: 553 EMTHEVNDLIETNMGLHQAIANDELEVFFQPKVNLDSQDIIGAEALIRWRHPKLGLLPPV 612

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGM 814
           +F+ +AE+  +I  I+ ++ +++A  I  W+         I  IN +++     +L + +
Sbjct: 613 DFLEVAEKSDLIIDIDKWVFKKVANLITEWQRTGMDLQGVIFSINFSARMFYMTDLADQL 672

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q ++ +T   P ++ L  +E  +M + E     +  L   G  + +DDFGT  S LS L 
Sbjct: 673 QVILDETDCQPHQLLLEITERDMMRDFETCSRTIEVLHSKGYKIAIDDFGTGYSSLSVLK 732

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D VK + S +           I  +++ +A+ ++ ++IA+ +  +  +  L ++GC
Sbjct: 733 NLSADCVKLDRSFIEDINSSKVDYEITCAVLKLAQILDFSVIAEGLETQNHVTTLRQIGC 792

Query: 933 DYIQDSHVASPLGFNS 948
            Y Q    A PL  + 
Sbjct: 793 KYAQGYFFARPLPIDD 808


>gi|254475033|ref|ZP_05088419.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. R11]
 gi|214029276|gb|EEB70111.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. R11]
          Length = 683

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 103/437 (23%), Positives = 207/437 (47%), Gaps = 10/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LTG+PNR S   +   +  L   +   +  V+ +D++ +K+IND+ 
Sbjct: 245 EAQDRLEHAALHDPLTGMPNRMSLTRKAEALTRLLKHNRTEKVAVLTLDLNLFKEINDLY 304

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL ++ +R+ + ++  + +AR  G+ F           +   FA  ++  +  
Sbjct: 305 GHAAGDAVLRTVAQRLSDAMEEGEYIARTGGDEFIAFKQGFRRVEQAIAFAERLQALVVE 364

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P++       V  +IG A+  +       ++  +++AMY AK     HV  F   +    
Sbjct: 365 PVDFENTSAIVGVAIGVATSINEGRDIESLIHKSDVAMYRAKADAERHVCLFNATMEEHS 424

Query: 702 SDRVMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +R+ +  DL  A     +  LVY     L     VG E L++WDHP  G I    F+ I
Sbjct: 425 RERLQLVNDLRQACIAGDQFELVYQLQNDLSSLAPVGFEVLLRWDHPTKGRIRPDIFIPI 484

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ I L++L     +   W          + +N+A + L+     E +  ++ +
Sbjct: 485 AEETGLIREIGLWVLRTACAEAADWP-----TNHSVAVNVAPQQLMQPSFVEHVSDILFE 539

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +  R++L  +E+ ++ +   +  ++ +L+ +G+ + +DDFGT  S L+ L   PFD 
Sbjct: 540 TGLAAERLELEITEASIIDDQVHTLKVMQQLKNMGLRIAMDDFGTGYSSLAMLQTFPFDK 599

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +     AI+RS + +   +   ++A+ +  E +++ L    C  +Q  
Sbjct: 600 IKIDRSFVQDVHKNDQRAAIVRSTLLLGAALNIPVLAEGVEVEDELQFLRSEKCASVQGF 659

Query: 939 HVASPLGFNSILKLLKE 955
           +   P+  + + ++++ 
Sbjct: 660 YFGKPMTRDEMRRIVEA 676


>gi|209550947|ref|YP_002282864.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536703|gb|ACI56638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 767

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/722 (20%), Positives = 279/722 (38%), Gaps = 38/722 (5%)

Query: 263 SSLIIFLFMYLHWNRW---------HAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
           + L++F      + R+         HA +       +A  A    +  +       +   
Sbjct: 57  AFLLVFSIRMAIFRRFDQVDKESLSHAGIERWERILVASGACTTALLGFASGYAIFVVHD 116

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
           + A +            + G              F     +  ++        +    + 
Sbjct: 117 SFAELACISVTMATMVSVVGRNYGSRFAVDLQTFFCCLPMIVCSLLAMDLYRGLLSIFLI 176

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              L    +   V + +       + I    +R   A+      +   D           
Sbjct: 177 PFWLTTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRIQVVNRK 236

Query: 434 IATILGLASGSMH-----GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
              +L + +         G +  +       D      IL        G L     V   
Sbjct: 237 ACELLKIGAPERLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRTL-VHFP 295

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           +     +         ++G     + I  D++ + K+ + I+     D LTG+PNR+ F 
Sbjct: 296 EG--LSLEFSAS--RRADG---GAVLIFEDVSSRVKAEQKIMHMVRFDALTGLPNREYFG 348

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             +   L             MV+DID++K +ND+ G   GD +L ++  RI +      I
Sbjct: 349 QLVQDYLAKHQRKSG-PLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQAS-GNAI 406

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           L RL G++F +          +      +  +I     + E    V+ S G+A   S+  
Sbjct: 407 LGRLMGDQFILFFPHAKEPASLDIEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESTAF 466

Query: 669 TSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
              E    A+LA++ +K R  GG       +     ++  +K DL  AV    L+LV+ P
Sbjct: 467 AMDEWSVKADLALFESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQP 526

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           + R     I   EAL +W HP+ G+I    F+ +AE++ +I  I  F+L +   + ++W 
Sbjct: 527 MFRADGSRIECAEALARWVHPEKGSIPPDVFIRLAEDMGIISDITRFVLFKACSECMNWP 586

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D      I + +N++++DL D ++ + +   ++ +    +R+ L  +ES ++  P   R 
Sbjct: 587 DH-----IAVSVNLSARDLRDADILKVVADALAHSGLDAARLHLEVTESCLIDEPAAVRA 641

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           +L  LR  GI++ +DDFGT  S LSYL  +P D VK + S +       +R+ +LR  + 
Sbjct: 642 ILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVH 701

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKE---RFPLV 960
           +A+ +   I+ + +  E  +  L +    D +Q    + P+   +I  LL++   R P+ 
Sbjct: 702 LARELGLKIVIEGVETEEQLALLNKHRSTDLVQGYVFSQPVPSQNIP-LLQQGIGRRPVQ 760

Query: 961 KN 962
           + 
Sbjct: 761 RR 762


>gi|187921596|ref|YP_001890628.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187720034|gb|ACD21257.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 481

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 209/439 (47%), Gaps = 9/439 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +EQ   +      +F D LTG+ NR    +RL  +L L   +   R  V+ I++D + KI
Sbjct: 36  SEQSSPIRNFGYTSFLDPLTGLYNRTYVAERLQHLLKL---NPAARVAVLFINLDCFGKI 92

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G  +GD VL  + RR+  L+   D+L R+ G+ F +++    ++  I +FA+ +  
Sbjct: 93  NDVAGYELGDRVLRGIARRLAGLMNHDDLLGRICGDEFVVVVDKRGDASAIGEFALQILH 152

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
             + P+ +  RE  + ASIG A  +     +  +++NA  AM  AK  G   V+ F   +
Sbjct: 153 LFSTPLEIAGREYHLGASIGIACSSGDARGADTLIRNAGSAMRRAKESGRGRVQFFTECL 212

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  ++E L  A+   EL L Y PII       VG EAL++W   + G ++ +EF
Sbjct: 213 QDESQRRFRLEELLRHALAAGELRLAYQPIINSASHRTVGAEALLRWTSSELGEVAPAEF 272

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  ++ +I  ++LE+       WR     P + + +NI+     +  L   + A 
Sbjct: 273 IPVAEEAGLMASIGDWVLEQACAQAAQWRRSIA-PRLPVSVNISPLQF-NEGLVRHVAAC 330

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +     S ++L  +E V+M +          L  +G++L LDDFGT  + LSYL    
Sbjct: 331 LERNGLDASALQLEITERVLMPDDPTVAATTAALASLGVTLALDDFGTGYASLSYLKRFA 390

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S + G       IAI R+++ MA     T+ A+ +        L  MGCD +
Sbjct: 391 LHNLKIDRSFVAGLPRDNDSIAITRALVAMAHACGMTVTAEGVETHEQATVLREMGCDML 450

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q   +  P   +     L+
Sbjct: 451 QGYLIGCPASADKFSASLR 469


>gi|167725448|ref|ZP_02408684.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei DM98]
          Length = 872

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 644

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 866


>gi|17549318|ref|NP_522658.1| hypothetical protein RS02603 [Ralstonia solanacearum GMI1000]
 gi|17431570|emb|CAD18248.1| probable signal transduction eal-ggdef domains transmembrane
           protein [Ralstonia solanacearum GMI1000]
          Length = 695

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/428 (25%), Positives = 206/428 (48%), Gaps = 7/428 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+P R      L + +  S+        +  +D+D   +IN+  G A GD VL  
Sbjct: 268 HDTLTGLPTRLQLQQALDSAILSSSRRGRP-FALFYLDLDGLGRINEQYGRATGDRVLEI 326

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ + ++  D +ARL  + FG+++         A     +   +   + +  R + V
Sbjct: 327 IAERLRQTMRDEDTVARLGSDEFGLLVEGLPLPEAAAPIGDKLLFRLREAVEVDGRRLRV 386

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
            ASIG A    +  T+  +L +A+ AM+  K  GGN    +    ++     + I+  L 
Sbjct: 387 AASIGVAIHPYNGATADALLAHADAAMFECKQAGGNAYRFYEPRLNTTAHRVLQIQRALS 446

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A  N +L+L Y P      + + G EAL++W+HP+ G +S +EF+ +AE    I  +  
Sbjct: 447 HAALNGQLFLYYQPKFDAHTQSMTGAEALLRWNHPELGPVSPAEFLPLAERTGTIVELGD 506

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++E + R I+ W D A M P+ I IN++ +  L  +L + +  ++ +   +P R+    
Sbjct: 507 WVIEEVCRQIMHW-DAAGMAPLKIAINLSPRQFLQPDLVQRLSQILYRYQVAPDRLMFEI 565

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM---T 889
           +E+  M +  +S   + +++ +G  + +DDFGT  S LSYL       +K + + +    
Sbjct: 566 TETAAMRDAGQSIAAIRQIQSLGFEVAIDDFGTGYSSLSYLQRFRAQQIKIDRAFIGALD 625

Query: 890 GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            S     AI+R+I  MA +++ T++A+ +     ++ L  + CD +Q   +  PL     
Sbjct: 626 DSPSDAYAIIRAICAMAHSLDMTVVAEGVETGTQMQALVNLRCDQVQGYLLGRPLPARDF 685

Query: 950 LKLLKERF 957
             L+  R 
Sbjct: 686 QTLIDHRQ 693


>gi|254292947|ref|YP_003058970.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
 gi|254041478|gb|ACT58273.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
          Length = 736

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 222/451 (49%), Gaps = 14/451 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+  I + + I   KK    +   A  D LT +PNR+ F  +L      +  +     ++
Sbjct: 283 IIATILLVSMIMRHKKLAVKVEKLAKVDPLTSLPNRRHFFQKLN-----ADVESEDSLSI 337

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            +ID+D +K IND+ G A GD +L + + R+ + L+    LARL G+ FGIIL +     
Sbjct: 338 GLIDLDGFKSINDIYGHAAGDQLLEAASARLTDQLQADVFLARLGGDEFGIILNTPQTEE 397

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           K+      +   +  P  L    +++  +IGFA +     T+  + + A+ A+YH+K   
Sbjct: 398 KLFKLGERICMLLKQPFTLNFGTVSIGGTIGFAQFPEFAKTTETLFEYADYALYHSKFHS 457

Query: 689 GNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             H   F      +   +  +++ L  A    EL + Y PI+       VG+EAL +W++
Sbjct: 458 KGHPVLFSKEHESTILGQRKMEQCLIDANLEEELQVHYQPIVDTHSGRTVGMEALARWNN 517

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S ++F+  AE L +I  +   ++E+  +   SW         ++  N+++ DL 
Sbjct: 518 PQLGFVSPAQFIPAAENLGIISKLTTILMEKALKVASSW-----TTDTYLSFNLSASDLA 572

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             E    + A+I ++ +SP R+    +E+ +M N ER+  +L   R +G+ + LDDFGT 
Sbjct: 573 SPETPLKLMAIIMRSGFSPKRLVFEITETTMMVNFERANEVLRPFRDLGVEIALDDFGTG 632

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L Y+  +P D +K + + ++    K+    I+ +I+ +  ++E   I + +     +
Sbjct: 633 YSSLGYIQKMPIDRLKIDRAFVSDLEAKKISRDIMGTIVDLCSHLEIKCIVEGVETHKQL 692

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  +GC  IQ  + + PL  +   + LK+
Sbjct: 693 ELVQLLGCHLIQGYYYSKPLPTDEANEFLKQ 723


>gi|255655535|ref|ZP_05400944.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296451526|ref|ZP_06893261.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296880125|ref|ZP_06904092.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296259591|gb|EFH06451.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296428850|gb|EFH14730.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 697

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/554 (19%), Positives = 223/554 (40%), Gaps = 22/554 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               + G+ + ++  ++       +P    +  L    +  P+  W   +H  D   F  
Sbjct: 157 YDALIRGTDEYIYICNMKTGVFRYSPSQVELFDLPGEIVENPLIYWEKIVHPEDWKRFYK 216

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   +      EFR +    ++ W+  R + M +  G    + GI   + +Q K  
Sbjct: 217 SNTEIGKNQMDYHTVEFRAKNRSGEYIWLRCRGQLMRDEFGKPSIFAGIMTQLGKQNKI- 275

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D+LT + N   F+      +     +   +  +++++ID +K +N++    
Sbjct: 276 ---------DSLTQLLNYHEFMSVFEDKISNPMIE---KLCIVLLNIDDFKNVNEMYDRD 323

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+++ +L + I  +L     L +L G+  GII+ +     +I      ++  I     
Sbjct: 324 FGDNIIKTLAQSIQSILPDNAELYKLDGDEMGIIVDNV-EEKEILTLYNQIQNMIIHLQL 382

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
             +  + +T S G   +     T  E+ K A  ++ +AK  G N +  F       +   
Sbjct: 383 WRKYGLNITISAGCVIYPKHGDTVKELYKYASYSLQYAKEHGKNRLVFFSQEILKNKMYS 442

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +  DL  ++ +      L + P +     +I+G+E L++W + K+  IS  EF+ I E
Sbjct: 443 LEMMRDLKASINDDFRGFSLRFQPQVDTQSHKIIGVEVLLRWTNDKYKAISPLEFIPILE 502

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  MI  +  ++L    R      D        + +N+++  +L++   E +  +I    
Sbjct: 503 EHDMINTVGAWVLRMALRTFKGLIDYYPF--FKVSVNVSAVQILEDTFIEDIVKIIDDEK 560

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           +    + L  +ES  + N    +     L+ +GI + +DDFGT  S L  L + P D VK
Sbjct: 561 FPYQNLVLELTESHTVQNMSILQFKFKALQDLGIYIAMDDFGTGYSSLEVLKFSPIDVVK 620

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     ++     +  I+ +  ++   +  + +  + +   + +M  DYIQ    
Sbjct: 621 IDRVFVKDILKSKFDATFIHFIVAICHDVGIKVCLEGVETQEEYDLVKQMKPDYIQGYLF 680

Query: 941 ASPLGFNSILKLLK 954
             P     I  LLK
Sbjct: 681 GKPQTATEIFDLLK 694


>gi|77360125|ref|YP_339700.1| GGDEF protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875036|emb|CAI86257.1| putative orphan protein ; putative GGDEF protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 789

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/450 (24%), Positives = 220/450 (48%), Gaps = 7/450 (1%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPT 567
           + R I +A D   ++ + + +   A  D+LTG+ NR   ++R+    L L+         
Sbjct: 342 VSRQISMAID---RQLARQELEHRALHDDLTGLANRSLLIERIKHAILRLARAKKGTSHA 398

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D D++K IND LG  VGD  L+ + + I   ++  D  +RL G+ F I + +  + 
Sbjct: 399 LLYLDFDRFKSINDSLGHEVGDHFLIKICQLIKGTVRNTDTFSRLGGDEFAIFMENITHR 458

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ D    ++ +++ PIN+    +  + SIG A   +    +  +L+ A+ AMY AK  
Sbjct: 459 NQVTDALKRIQLALSKPINIDGHLLQASTSIGVALSDNENDKAYILLQQADAAMYEAKST 518

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G   V+ F     +       I+ DL   +E++E  L + PI  +   E++G EAL++W 
Sbjct: 519 GRGQVKLFNNIMRKKLKTHADIENDLQHGIEHNEFELYFQPIFTIATCEVIGFEALVRWH 578

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G +  ++F+ IAE+   I  ++L +L+  A+ I +W  Q +   + + +N++S+  
Sbjct: 579 HPSKGFVPPNDFIPIAEKTGQIINLDLHLLDLAAQQISTWHQQGHRF-LKVTVNVSSRHF 637

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +    + A+ +K       + L  +ES ++ N + +  ++  L  + + L LDDFGT
Sbjct: 638 ASLDFVAQIHAIYNKYQLPLGSLCLEITESGLIENLDLATQIIEGLSPLKVKLCLDDFGT 697

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             S L YL  +P   +K + S +    +    ++ +I+ +A ++   ++A+ I     + 
Sbjct: 698 GYSALGYLHQLPIHILKIDKSFIDHLHDSANPLVDAILSLAISLNLAVVAEGIETAEQLA 757

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L    C+Y Q    + P+     + L+  
Sbjct: 758 ILQTTQCNYGQGYLKSKPVTAQEAILLIDA 787


>gi|328950802|ref|YP_004368137.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinithermus hydrothermalis DSM 14884]
 gi|328451126|gb|AEB12027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinithermus hydrothermalis DSM 14884]
          Length = 955

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 136/616 (22%), Positives = 261/616 (42%), Gaps = 26/616 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
           F+    + +    R    +   A   G      +     +Q VL+               
Sbjct: 354 FLSVCAVPVLREGRTVAVLALYAGARGFFTEEEIDFLEELQRVLSAALEDIEAEQHRRVI 413

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRT 466
             AV  S D +   D     V     +  I G A   + G   + +    H  D   +  
Sbjct: 414 ERAVEASPDWIVVTDAEGGIVYVNDAVCRISGYAREELLGRKMSIFRSGYH--DPGFYAK 471

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + ++    R    Q  F  R  D +  ++   I P+   NG + R +G+A D+T ++   
Sbjct: 472 LWEAVRAGR--SFQAVFVNRRKDGKRFYLDQTIVPVM-RNGAVHRIVGVAKDVTVERHLQ 528

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E ++   +QD LT + NR+ FL  +   L     +      +++ D+ ++  +N   G  
Sbjct: 529 EEVVLLRYQDPLTHLLNREGFLLEVEGEL----REREGSKALLLADVHQFTHVNRAFGAR 584

Query: 587 VGDDVLVSLTRRIGE--LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            GD +L +L +R+ E        ++ R+  + FG++L        I      + ++   P
Sbjct: 585 FGDALLYTLGQRLRERVARLGGGLVGRVGEDAFGVLLPGV-EPSAIEAVLPHIFEAFTEP 643

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE---SFRVSSFR 701
                  +++   +G A       ++ E+   A  A+  +K +GG +        + +  
Sbjct: 644 FEWNGETLSLGVHVGVAFSPRDATSAHELYNKAATALNFSKRKGGENTFSLFDQEMDARA 703

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +  +  L  +++     L + P        + G EAL++   P+ G ++ S F+ + 
Sbjct: 704 LRYLGWRAQLEQSLKEDRFELYFQPYFYTDTRTLAGAEALLRLRDPQKGLLAPSAFIEVL 763

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I A+ + MLE+I   ++S        PI I  NI+ K L +    E +QA+    
Sbjct: 764 EESPLITAVEMAMLEKIRAFLLSLER-----PIKISFNISPKSLTNARFLEAIQAISRDV 818

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E +++   ER+R+ L  +RK+G+ + +DDFGT  S L+YL  +P D +
Sbjct: 819 G---RYLVLEVTERLLVEEAERARVFLEEVRKLGVRVAVDDFGTGYSSLAYLERLPVDFL 875

Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   T+ R   AI+ +++ +A  +    IA+ +  E + K L  +GCD +Q  +
Sbjct: 876 KIDMSFVQRMTQSRRSLAIVDTLVSLAMKLGLKTIAEGVETEEEYKLLALLGCDIVQGYY 935

Query: 940 VASPLGFNSILKLLKE 955
           +A P+   ++  LL +
Sbjct: 936 LAKPMPREALEALLSD 951



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
              +   +LG +   +      +L  +H  D    R  L          L++ +R R  D
Sbjct: 28  LNREAEGLLGWSEHEIAQNPAGFLEKVHPEDAPRVREGLRCLFLG-VDELRHRYRYRRKD 86

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDIT--EQKKSLEGILCNA 533
             +  ++  +  +++  G  L +I +  + +  +++  +   L  A
Sbjct: 87  GTYLVVLETLN-VTHRAGTRLEWISVWQEASWVQERAEILEALDRA 131



 Score = 43.4 bits (101), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 8/138 (5%)

Query: 398 QGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
           Q      ER  +  A+  +   V         V        +LG     +          
Sbjct: 113 QEASWVQERAEILEALDRAP-GVAVVLFRDTFVYANEAAQQLLGYTREELLRLRPE--EV 169

Query: 456 IHINDRDNFRTIL-DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +     +  R  + +         L  E  +R A  +   +++  R ++   G     + 
Sbjct: 170 LPEELWEAARAFIAEEAYAKGFELLSQELPLRTARGERRDVLVFARTVT-YQGRPTG-LA 227

Query: 515 IANDITEQKKSLEGILCN 532
           IA D T++K+        
Sbjct: 228 IAIDQTQRKRYERLYRLL 245


>gi|254228336|ref|ZP_04921763.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262394407|ref|YP_003286261.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|151939142|gb|EDN57973.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262338001|gb|ACY51796.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 719

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 223/453 (49%), Gaps = 18/453 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A+ D LT +PNR+  L  +   +       +    V+ ID+D +K IND  
Sbjct: 267 RYTSRVEFMAYHDILTSLPNREKLLIDIQKQITNRK---SPSLAVVFIDLDDFKHINDNY 323

Query: 584 GIAVGDDVLVSLTR----RIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           G ++GD +L  L      R+    +       I++R+  + F ++     +SL   + A 
Sbjct: 324 GHSIGDKLLGHLASELQGRLPSYFQPLYRLSTIVSRVGADEFVLVFP-CKDSLHAREKAD 382

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  P NL E +I +TAS+G A +      +  +L+ + LA   +K RG + +  +
Sbjct: 383 DIHRQLLSPFNLEENDIQITASLGVAVYPEFGSNAESLLQLSSLAAQESKRRGKDIMTIY 442

Query: 696 RVSSFRSDRVMI--KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
             +   + +  +  +++L  ++ + S+  L Y P   L   +++G+EAL++W+HP+ G I
Sbjct: 443 DSAFDETVKQRLYIEKELRRSIRDLSQFELWYQPQFDLNTYQLIGVEALVRWNHPEKGYI 502

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ IAE+  +I  +  +++E        W D        I +N++ + +   +L +
Sbjct: 503 SPELFIPIAEQSDLILELGEYLIETAISQRAQWADHFAA-DFHIALNLSPRQIYRQDLSQ 561

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                + +    P  I +  +ES+ + + E+++ +L +L+  G+ + LDDFGT  S L+Y
Sbjct: 562 LFSKYLQQYQVPPKTIHVEVTESLFIDDIEKAQYVLKKLQANGVEVWLDDFGTGYSALAY 621

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  + FD +K + S +      E+  +++R+II MA N+   ++A+ I  +  +  +  +
Sbjct: 622 LQQMSFDGLKIDRSFIAQIQKNEQDDSLVRAIISMAHNLRMRVVAEGIETQTQLTRMESL 681

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            CD +Q   +  P+    I++  ++R  +  +T
Sbjct: 682 HCDVVQGFFLGRPVPAEEIIEFEQQRQAIDDST 714


>gi|309389042|gb|ADO76922.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halanaerobium praevalens DSM 2228]
          Length = 696

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/573 (22%), Positives = 253/573 (44%), Gaps = 24/573 (4%)

Query: 399 GIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
            +  + E   L  A+  + + V   D           +  I G     + G     +   
Sbjct: 132 SLKREMEMVKLVKAINETDNWVVITDKRGIIEYANTTVEEITGYKKEEVIGQNPSIFKSD 191

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H N    ++ + +                +  +  + +    I P+ + N  I+ YI +
Sbjct: 192 KHSN--QFYQKMWNKIRAGE--VFNDVIINKKKNGDYFYSEQTITPIKDQNQKIINYISV 247

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT+ +K    I   +  D   G+PNR+S  +++  ++ L A     +  ++V++I+ 
Sbjct: 248 GRDITQNEKLKRKIEYISNYDIQFGLPNRKSIKNKMENLIGLKAKS---KLAILVLNINN 304

Query: 576 YKKINDVLGIAVGDD-VLVSLTRRIGEL---------LKFPDILARLSGNRFGIILISEN 625
            K +ND+   +  +  ++  L   I +          +   + LA L GN F + + + N
Sbjct: 305 IKYLNDIYNNSQTEKDLINLLADLINKQQLVNQKCVKIDRENYLAYLGGNNFALAVDNLN 364

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++ +I   A  +       I+  +    + A IG + +    I+S  +L NAE+A+ + K
Sbjct: 365 SANEIYKLAEKILDIFTDTIDYNQESFMLNARIGISIYPDDCISSQNLLSNAEIALINIK 424

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                      ++        ++  L  A++N E  + Y P  +  D  + G+EALI+W 
Sbjct: 425 KN-DYAFFDQEMNQEIKKFTKMEAKLDKAIKNDEFVIYYQPYYKGADHSLYGMEALIRWQ 483

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +P+ G IS +EF+ I E   +IK + L ++ ++   I  W  +     + + IN+++K L
Sbjct: 484 NPQQGLISPAEFIPILENSQLIKKVGLIVISKVVNSIKHWLAKGYQV-VPVSINLSAKQL 542

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            DN   + +  LI  +  + S IK   +ES  M +   S  ++ ++++ G ++++DDFGT
Sbjct: 543 EDNTHLKNIYRLILNSGINHSLIKFEITESSAMNDVNYSLKVMNKMKEKGFAISIDDFGT 602

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S  SYL   P D +K + S +     ++    I+ SII +A  +    IA+ +  + +
Sbjct: 603 GYSSFSYLQKFPIDYLKIDISFIRNMTLSKDGQNIVESIINIAHLLNLQTIAEGVEKKSE 662

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  L ++  DYIQ  +   P+  + I K+  E+
Sbjct: 663 LDILNKLTNDYIQGYYFDRPMPKSDIEKMYIEK 695



 Score = 41.1 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 5/143 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +            +     + +L    S      W               +LG     + 
Sbjct: 1   MAQKNDENSLKHKLQFTENKLNLIYQNSPLAFISWSNNGQIKNLNQAAVRLLGWEQEELT 60

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              +     I   DR+ +    +  + Y         R    +            +    
Sbjct: 61  NQ-KFISTIIAEKDREIWSKFKNEKLEYLPQGFMS--RTLKKNGTIINCRWNNIIIPKRK 117

Query: 507 GDILRYIGIANDIT-EQKKSLEG 528
                 I +A +++   K+ +E 
Sbjct: 118 NKFE-IISMAQNVSYSLKREMEM 139


>gi|296129382|ref|YP_003636632.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cellulomonas flavigena DSM 20109]
 gi|296021197|gb|ADG74433.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cellulomonas flavigena DSM 20109]
          Length = 724

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 140/568 (24%), Positives = 245/568 (43%), Gaps = 12/568 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T +  + A       +     +  +A+  +   +   D+          +A +LG  + 
Sbjct: 165 LTTVVDITARHDVEVALSRSETQFKVAMENAPIGMALVDLQWRISEANVALAELLGTHAS 224

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G   + L      DR   R  +D  +G  + R   E R R AD+Q  W+++    + 
Sbjct: 225 ALRGYRIDELSA--PEDRAAQRMEMDKLLGGGQQRFSLEMRCRRADDQLVWVVLDAALVR 282

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G    ++    D TE K   E +   A  D LTG+ NR    + L T L      D 
Sbjct: 283 AGDGAPDHFVVQVRDATESKMQAEMLTHRAMHDPLTGLANRTLLQEVLQTALAQPGAVD- 341

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  V+  D+D +K IND  G A GDD+LV +   +         +ARL G+ F +++  
Sbjct: 342 -RIAVLACDLDGFKGINDRYGHAAGDDILVHVAGVLRAASAGSGTVARLGGDEFVVVVQD 400

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAM 681
            + +  + + A  +   +A P+ +  R + V AS+G A       +  +  +L  A+ A+
Sbjct: 401 VHAAKAVFEVANEIHSGLAEPVRVGRRRLGVAASVGIALAEPHLVEAGAPTLLAAADAAL 460

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           Y AK  G    E +  S   +    +  +L  A+   E+ + Y PI+ L D  +VG EAL
Sbjct: 461 YRAKQSGRGRTEVYDTSMELAAPSNVHRELLHAITTGEIVVHYQPIVDLSDSRVVGYEAL 520

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +    F+   +E  +   +   +  R+   + +          ++ +N++
Sbjct: 521 VRWQHPHRGLLLPGAFLPQVQEAGVSVMLGQLVASRVVEFLATNAHDGR----WVSVNVS 576

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L D+EL   +   +S+   +  R+ L  +ES ++ +  R R  L +L   G+ + LD
Sbjct: 577 ADQLGDSELATRLLQDLSRHRVTAGRLVLELTESSLVASGTRIRHELTQLSAAGVPILLD 636

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P   VK + S  +G         ++R++  +A+ +    IA+ I 
Sbjct: 637 DFGTGVSPLSYLRDLPVAGVKLDMSFTSGIPHDPTAGKVVRALGALARELAMVTIAEGIE 696

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            E     L R G  Y Q       L   
Sbjct: 697 NEEQADFLRRNGWRYGQGWLYGGALPME 724


>gi|239994057|ref|ZP_04714581.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii ATCC 27126]
          Length = 627

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 101/448 (22%), Positives = 207/448 (46%), Gaps = 14/448 (3%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNR----QSFLDRLTTILDLSATDDNLRPTVMVID 572
            ++++ +++   I   A  D LT +PNR    + F ++L       + +  L+  ++ ID
Sbjct: 183 QEVSKVEQNRAHIQHLAHHDPLTNLPNRILGERLFNEKLRE-----SEEKGLQLALLFID 237

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +ND LG A GD  L  +++ I + L     L R  G+ F ++    ++  +I D
Sbjct: 238 LDNFKPVNDALGHAAGDRFLQKISQTITDHLSTKQSLIRFGGDEFIVLAPEISDKSEIDD 297

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +    +    +L+ ++ V+ SIG A      I   ++ + A++AMY AK  G N  
Sbjct: 298 LCKNLITWCSNEFEVLQTKVVVSGSIGVAQAPYDGIKFKQLCRKADIAMYEAKRNGRNRY 357

Query: 693 ESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           E + V     +     + + L  AV+ +E  + Y P+I L   E+  +EAL++W      
Sbjct: 358 EYYDVRFDEENDEKFTLIQRLRPAVQANEFEVYYQPLIDLASNEVQAVEALLRWPQKDGS 417

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+ +AE   +I  +  ++L +        + +     + + +N++     D  L
Sbjct: 418 MIFPDKFIPLAESSGLIIPLGAWVLNQACEFCAK-QHENGHTNLTVAVNLSFAQFKDGTL 476

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +  +  +P  ++L  +E+++      +   L  ++ +G+   +DDFGT  S L
Sbjct: 477 PAVVEQALQNSRLAPQFLELELTETILADENGTTGEQLEAIKSLGVHFAIDDFGTGYSNL 536

Query: 871 SYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL       +K +   +   G  E    ++ +II +A ++    +A+ I  +  +++L 
Sbjct: 537 NYLQTFSARKLKIDRIFINTLGIGENDAPLVAAIISIADSLGMKAVAEGIESKPALEKLI 596

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
           +MGCD  Q  + + PL    + + L   
Sbjct: 597 KMGCDLGQGYYWSKPLPAPEVERFLSNH 624


>gi|224373338|ref|YP_002607710.1| sensory box/ggdef family protein [Nautilia profundicola AmH]
 gi|223589519|gb|ACM93255.1| sensory box/ggdef family protein [Nautilia profundicola AmH]
          Length = 652

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 219/434 (50%), Gaps = 14/434 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++ +E +  ++  D+LT + NR+   + L  ++      +N +  V+ IDID +K IND 
Sbjct: 226 REYIEKLEISSITDSLTRLKNRKFLNEYLVKLIS-----ENQKFAVVFIDIDNFKDINDF 280

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G +VGD++++ ++  + + +K  +I+AR+ G+ F ++    NN   + +    +  S+ 
Sbjct: 281 FGHSVGDEIIIEISSILSKHVKNHEIVARIGGDEFVLVFQEYNNEEDLKERLDLLLNSLH 340

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
               +  + I  T SIG A +  +  +  E+LK A++A+Y AK  G N    F  +  + 
Sbjct: 341 RTWTIHNQNIGTTVSIGVAEFPKTAKSVEELLKFADIALYEAKKMGKNKYVIFDENLKNK 400

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  + IK  +  A+ N+E  L Y P     ++ I+G EALI+W       IS  +F+ I
Sbjct: 401 INKEIQIKTTMNQALVNNEFKLFYQPKFD-KNKNIIGCEALIRWIR-DGQIISPLDFIPI 458

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  +  +++E +A+    W ++     + I  N+++    + +    ++ +  K
Sbjct: 459 AEKSGFIIQLGNWIMEEVAKVQQEWLNKG--IKLEISFNVSAVQFRNEKFVNDLKEIFKK 516

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +    + I++  +ESV +   ++++ ++  +R  GI ++LDDFGT  S LS+L     D 
Sbjct: 517 SQ--RNLIEMEITESVFIQEKDKAKTIINEIRDYGIRISLDDFGTGYSSLSFLREFEIDV 574

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +    +E+    +++I+ MA+N+    IA+ +  E     L  +GC Y Q   
Sbjct: 575 LKIDKSFVDEIYSEEGKVYVQTILNMAENLHLETIAEGVETEEQFNILKSLGCKYFQGYL 634

Query: 940 VASPLGFNSILKLL 953
            + PL      K +
Sbjct: 635 FSKPLPKEEFEKFV 648


>gi|308231814|ref|ZP_07413870.2| hypothetical protein TMAG_03501 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369774|ref|ZP_07419019.2| hypothetical protein TMBG_01184 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370696|ref|ZP_07422405.2| hypothetical protein TMCG_00989 [Mycobacterium tuberculosis
           SUMu003]
 gi|308371942|ref|ZP_07426766.2| hypothetical protein TMDG_01236 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373116|ref|ZP_07431075.2| hypothetical protein TMEG_01256 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374289|ref|ZP_07435478.2| hypothetical protein TMFG_02548 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375437|ref|ZP_07443917.2| hypothetical protein TMGG_01922 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376698|ref|ZP_07439724.2| hypothetical protein TMHG_00541 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377699|ref|ZP_07480108.2| hypothetical protein TMIG_03034 [Mycobacterium tuberculosis
           SUMu009]
 gi|308378914|ref|ZP_07484301.2| hypothetical protein TMJG_03742 [Mycobacterium tuberculosis
           SUMu010]
 gi|308215961|gb|EFO75360.1| hypothetical protein TMAG_03501 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326511|gb|EFP15362.1| hypothetical protein TMBG_01184 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331153|gb|EFP20004.1| hypothetical protein TMCG_00989 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334993|gb|EFP23844.1| hypothetical protein TMDG_01236 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338800|gb|EFP27651.1| hypothetical protein TMEG_01256 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342439|gb|EFP31290.1| hypothetical protein TMFG_02548 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346353|gb|EFP35204.1| hypothetical protein TMGG_01922 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350275|gb|EFP39126.1| hypothetical protein TMHG_00541 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354924|gb|EFP43775.1| hypothetical protein TMIG_03034 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358868|gb|EFP47719.1| hypothetical protein TMJG_03742 [Mycobacterium tuberculosis
           SUMu010]
          Length = 602

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 8/450 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +  +  +   +   A  D+LTG+ NR++ L  L   L             + +D+D+
Sbjct: 146 FAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLA---PGQPGPVAALFLDLDR 202

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K IND LG A GD  +    +RIG+ L    ++ARL G+ F +I  S  ++      A 
Sbjct: 203 LKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAE 262

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +R  +   + +    +T T SIG AS T  + T S++L+ A+ A   AKH GG+ V  F
Sbjct: 263 RLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIF 322

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S  +   I+  L   +E+  L LVY P + L   +IVG EAL++W HP  G ++
Sbjct: 323 TADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLA 382

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE + +   ++ ++L R   +   W+         + IN+++  L+     + 
Sbjct: 383 PGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDALLRINVSAGQLVTGGFVDF 442

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I +     S + L  +E+VV+ +   +R  L RL+++G+ + +DDFGT  S +S L
Sbjct: 443 VADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLL 502

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K + + +   G+    + I+R I+ +A+  +  ++A+ +  E   + L    
Sbjct: 503 QTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQR 562

Query: 932 CDYIQDSHVASPLGFNSILKLL-KERFPLV 960
           C   Q    + P+   ++  +L   R P  
Sbjct: 563 CYRAQGFLFSRPVPGEAMRHMLSARRLPPT 592


>gi|264678952|ref|YP_003278859.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2]
 gi|262209465|gb|ACY33563.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni CNB-2]
          Length = 1125

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/460 (25%), Positives = 218/460 (47%), Gaps = 7/460 (1%)

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               I  ++ S  D+   I I    +EQ +    +      D LTG+PN   F + LT  +
Sbjct: 653  EDEIALLTESADDLAFGISILRTRSEQLRVQAEMNHMLRHDPLTGLPNSIEFREVLTATI 712

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            + S++       +   +I++ ++IN+VLG + GD +L     R+ + +     +ARL G+
Sbjct: 713  EGSSSHPEPIAALQF-NIERLREINEVLGFSNGDQILRDFGERLRQSIPDSAHIARLRGD 771

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F ++  +  +       A  + K+I+ P  + + E+ V+A  G A +     T+ E+L+
Sbjct: 772  EFAVLAPTL-DRGSAVALAEELEKTISRPFPIADIELDVSARAGIALFPEHGTTADELLR 830

Query: 676  NAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
                A + AK RG    V        ++ R+ +  +L  A+  ++L L   P +     +
Sbjct: 831  QMGKATHQAKARGLSQCVFDPSHQKNQAGRLTMAGELRRAIAGNQLRLFLQPKVDFSSGQ 890

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
            I G EAL++W HP  G I    F+ +AE+  +IK +  +++      + SW+ ++   P 
Sbjct: 891  ICGAEALVRWMHPIKGLIPPGLFIDLAEQTGLIKPLTEWVIVAALDLLQSWQAKSCAVP- 949

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
             I IN+++++  D +L    +   S+   S   +++  +ES VM + E +   L  +   
Sbjct: 950  -IAINLSARNFRDEQLFAKYRQWHSERSVSTGLLEIEITESTVMEHAEYALRALSEMSDA 1008

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETT 912
            GI L +DDFGT  S LSYL  +P D +K + S ++     R    I+RS I +  ++   
Sbjct: 1009 GIPLYVDDFGTGYSSLSYLQKLPVDYIKIDQSFVSAMHRDRDSATIVRSTIDLVHDLGRK 1068

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +A+ +  +     L  +GCD  Q  ++A P+  +   + 
Sbjct: 1069 TVAEGVETKEHWDLLKDLGCDIAQGYYIAKPMPSSDFQQW 1108



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 2/149 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + +  T    + +  + E     +   GD V   D              + G +    
Sbjct: 206 IRRQLRETEASQRALADNEESLVTTLHSIGDAVLATDTEGRITRMNSVAEQLTGWSINEA 265

Query: 446 HGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMS 503
            G  I      IH   R+     + + +     ++  ++  + A D     +     P+ 
Sbjct: 266 QGRSIEEVFNIIHEQTREPAHIPVATVLATGEVQILADYTSIIARDGTERPISDSAAPIR 325

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
           +S G +   + +  D+T ++K+   I   
Sbjct: 326 DSKGQLRGAVLVFRDVTLERKAQRIIREQ 354


>gi|331018527|gb|EGH98583.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 554

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 210/440 (47%), Gaps = 11/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +   A QD LTGI NRQ F       L  +   +     +  +D+D ++ 
Sbjct: 110 VHERSRLEDTLRRLAGQDPLTGIANRQGF-----QALLANRLAEGGSLALGHLDLDNFRH 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTTPTRALQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLAEPYWVDGESLLLGCSLGIAHSPTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   E+ L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDEMELHYQPRLCLDTGRIVGLEALVRWRHQERGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  +D+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FIPLAEQSGLIVPLGYWVIFRALKDMQALREQGLA-PLHMAINLSFRQFQDSQLLPTLNR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++ R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEEHNVDAHWLEFELTETAVMRRSDQVRQTMEALGRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 463 PIALLKVDMGFVEQMEAREENRKLVNAMITLAHNLNLEVVAEGVETTGQLELLRSFGCNQ 522

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q   ++ PL    +L  L+
Sbjct: 523 VQGYLISRPLPMEQLLTYLR 542


>gi|170078959|ref|YP_001735597.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886628|gb|ACB00342.1| Two-component response regulator; GGDEF domain protein
           [Synechococcus sp. PCC 7002]
          Length = 602

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTIL--------DLSATDDNLRPTVMVIDIDKYK 577
            + I      D +T +PN+ +  D L  +L              ++ +  +  + +D+++
Sbjct: 144 RQQINYAVTHDPITQLPNQLALRDDLNRLLKQWEPFVQQQLQPHESWQIPIFYLSVDRFE 203

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA--DFAI 635
           KIN++ G   G+ VL  + R++  ++     LA L+   F +I        +      A 
Sbjct: 204 KINELFGYQFGNAVLKHIVRQLVTVVAEEAYLACLNYTDFVVIYPPNCAVHEAELNQMAE 263

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + ++   P+ +  ++I +   IG  +    +    + L  A+ AM  A+ RG  +    
Sbjct: 264 QILEAFGSPLTVNGQKILINWYIGMITMPYREYNFDKYLNQAKEAMETARQRGSTNYYFH 323

Query: 696 RVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
              +        +++  DL  A++N++L L Y P I     +IVG EALI+W HP  G +
Sbjct: 324 FQEAQINANHQNLLLDADLYDAIQNNQLTLYYQPKISTTTGKIVGAEALIRWFHPTLGMV 383

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AE+  +I +I  ++          W  Q  M  + I +N++ +     +L E
Sbjct: 384 SPAKFIPLAEKNGLIASIGEWVFRAACHQAQQWM-QRGMSDLRIAVNLSGRQFYQAQLVE 442

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  +  +   +P++I+L  +ES+++ + E +   L  L+  G  + +DDFGT  S LSY
Sbjct: 443 NLVEITQQYGINPAQIELEVTESILISDVELAIAHLQALKNSGFPIAIDDFGTGYSSLSY 502

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K +   +           I++ II MAK +E T +A+ +    +++ L   
Sbjct: 503 LQNFPFDILKIDRCFVRNVAHNITNSTIVKHIIMMAKQLELTTVAEGVETMAELEFLKTQ 562

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
            CD IQ    + P+       +L+ 
Sbjct: 563 HCDEIQGFLFSPPVPAEKFTAMLQA 587


>gi|257092414|ref|YP_003166055.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044938|gb|ACV34126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 957

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/569 (20%), Positives = 240/569 (42%), Gaps = 15/569 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           V  H        Q I  + +     +  +  I+         +T       + G ++  +
Sbjct: 392 VAAHSAEMQGMLQRISVERDFSQGLLDTAQVIILTQYADGRILTLNRYGHLLSGWSTAEL 451

Query: 446 HGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            G    +   +  ++      R  L+  V   R   Q E  +  A+ + + +      + 
Sbjct: 452 IGK--RFGDLLRPDESAGAETRHALEEIVAGDRQHTQLESILVGANGESYEITWNHSRLP 509

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               D +  + +  D TE+K++   +   A  D LTG+ NRQ F   L   L  +     
Sbjct: 510 GRIDDAVVILSVGIDHTERKRAESHVSYLAEHDPLTGLVNRQHFQHELDKALLSARRLAR 569

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D +K +ND+ G   GD +L ++   +  + +  D+L RL G+  G++L  
Sbjct: 570 -DGALLYLDLDGFKYVNDLSGHQAGDALLRTVADEVANVARSSDLLGRLGGDELGVLL-H 627

Query: 624 ENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           E +       A  + K +A      L     V+ASIG   ++ + +   ++L NA++AMY
Sbjct: 628 ECDRDGAVQVAEKINKRLAEIRFPELAASHRVSASIGIVVFSEATMDVKQLLANADIAMY 687

Query: 683 HAKHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            AK RGG     +            R+  +E +  ++ +  L + Y PI+ +   ++   
Sbjct: 688 QAKSRGGAGWHIYSEGEGVQEKMQSRLHWEEMINRSLLDEGLLVYYQPILDIRARQVSHY 747

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++        I    FM +AE+  +I+ I+  ++ ++   +++             I
Sbjct: 748 EALVRMRSADGSIIPPGLFMEVAEDSGLIREIDRRVIHQVFGKMLALFAIGRSYKF--SI 805

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   + D  L   ++  +S++   PS +    +E+  + +   +R  +  +R++G + 
Sbjct: 806 NLSGVSINDARLLSFIRDELSRSPLLPSHVVFEITETAAVSDFSAARTFMNAVRELGCAF 865

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFG   S  +Y+  +P D VK +GS +     +      +R++  +A+      +A+
Sbjct: 866 SLDDFGVGFSSFNYVKQLPVDYVKIDGSFVRTLVDSPDDQVFVRALAEVARGFGKKTVAE 925

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +  E  +K L   G DY Q   +  P  
Sbjct: 926 FVEDERALKMLRSFGVDYAQGYFIGKPAP 954


>gi|28867354|ref|NP_789973.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213971721|ref|ZP_03399827.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301382492|ref|ZP_07230910.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062438|ref|ZP_07253979.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302133041|ref|ZP_07259031.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850588|gb|AAO53668.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213923539|gb|EEB57128.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 554

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 210/440 (47%), Gaps = 11/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +   A QD LTGI NRQ F       L  +   +     +  +D+D ++ 
Sbjct: 110 VHERSRLEDTLRRLAGQDPLTGIANRQGF-----QALLANRLAEGGSLALGHLDLDNFRH 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTTPTRALQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLAEPYWVDGESLLLGCSLGIAHSPTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   E+ L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDEMELHYQPRLCLNTGRIVGLEALVRWRHQERGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  +D+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FIPLAEQSGLIVPLGYWVIFRALKDMQALREQGLA-PLHMAINLSFRQFQDSQLLPTLNR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++ R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEEHNVDAHWLEFELTETAVMRRSDQVRQTMEALGRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 463 PIALLKVDMGFVEQMEAREENRKLVNAMITLAHNLNLEVVAEGVETTGQLELLRSFGCNQ 522

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q   ++ PL    +L  L+
Sbjct: 523 VQGYLISRPLPMEQLLTYLR 542


>gi|116669629|ref|YP_830562.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter sp. FB24]
 gi|116609738|gb|ABK02462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter sp. FB24]
          Length = 714

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 135/612 (22%), Positives = 251/612 (41%), Gaps = 48/612 (7%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            L+     + + +    + H         G+       S  +  + D +           
Sbjct: 111 GLLDIAAGLCMSVSVRDMTHREE---PDDGLREAMSLLSATLESTADGILVVGTDGQIAG 167

Query: 430 TTPDIATILGLASGSMHGP-----IRNWLPYI-HIND-RDNFRTILDSFVGYRRGRLQYE 482
                 ++ G+    +        IR  L  +       D  R + +  +      L++ 
Sbjct: 168 VNEQFVSMWGIPRELLATHDDEAVIRYVLGLLKRPQSFLDKVRELYEHPLAESNDILEFT 227

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL--------------EG 528
                 D +      R + +++    ++  +    D+T +  +               E 
Sbjct: 228 ------DGRTFERYSRPQKVAD---KVVGRVWSFRDVTPRLAAQDQAKRALADLAEQAEQ 278

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   AFQD LTG+ NR+ F D+L   L  +         + +   D +K++ND+LG   G
Sbjct: 279 LKALAFQDPLTGLANRKLFHDQLAASLRGTGPGAVDVLLLDL---DDFKEVNDILGHHAG 335

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L  + RR+   ++  D +ARL G+ F ++L        I   A  +  S+ +P+ + 
Sbjct: 336 DEMLTEVARRLRSCVRPDDTVARLGGDEFVVLLTGSPEPDAI---AERIVDSLNVPMWID 392

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
              +  + S+G AS     + +SE+L+ A++AMY AK  G N    F      +      
Sbjct: 393 GTMLRPSLSLGLASAGPD-VAASELLRQADVAMYAAKAAGKNRYMRFEPEMMTALVQRTD 451

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L LAVE+ ++ + Y P+I     E+V  EAL +W       + + +F+  AE    
Sbjct: 452 MEAGLRLAVESGQITVHYQPVISPRLGEVVQFEALARWKR-DGELVPAGQFIPTAERSGQ 510

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I AI + ++     ++  W          + +NI+   L D +  +G+  L +     P 
Sbjct: 511 ISAIGMQVMRHSFTELQPW--LTGDATRSVAVNISGVQLKDCKFADGVLRLAASCGADPR 568

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ L  +ESV           L  LR  G+ + LDDFGT  S L  L  +P D VK + S
Sbjct: 569 QLVLEVTESVFFDPDAHVIRQLDLLRDAGVRVALDDFGTGYSSLGRLQELPVDAVKIDRS 628

Query: 887 LMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            ++   +  +++ IL S+I MA ++  T+ A+ I      + LT + CD +Q    + P 
Sbjct: 629 FVSMVRTGAEKLPILNSMINMAHSLGLTVTAEGIETAAQARHLTNLHCDSLQGYLFSHPE 688

Query: 945 GFNSIL-KLLKE 955
             + +   LL+ 
Sbjct: 689 PQSGVELALLRS 700


>gi|254372418|ref|ZP_04987908.1| signal transduction protein with a PAS [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570146|gb|EDN35800.1| signal transduction protein with a PAS [Francisella novicida
           GA99-3549]
          Length = 701

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/587 (24%), Positives = 262/587 (44%), Gaps = 22/587 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L        +         +    +   L    S DI++  D     V        +   
Sbjct: 126 LRVLGTRSDISDLKQIELKLKETQDFLELMFDASEDIIFVKDKNYCLVRANRAFFNLFPK 185

Query: 441 -ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               S+ G     +   + +D + F    D+           E+ ++  + +   +    
Sbjct: 186 NTHSSLIGS--TLIENFNSSDAEYFLK-YDALAFETGSSKTIEY-IKLPNGEDRILDTYK 241

Query: 500 RPMSNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
               + N      +GIA D+TE+       K + + +   A++D+LTG+ NR+ F+ + +
Sbjct: 242 IRFYDKNNTP-YLLGIARDVTEREIILNKLKDTNKKLEEIAYKDDLTGLLNRKGFIKKAS 300

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +      +    T+  ID+D +K IND  G  +GD +++ +++R+        I+ R 
Sbjct: 301 NHIAEIQNLN--LVTLFCIDLDNFKFINDSFGYNIGDGLIIKISKRLKNFFNKDTIIGRS 358

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I+  +  + ++IA  A  + K IA P  +     + ++SIG A + +      +
Sbjct: 359 GGDDFLILTDNLQSLIEIAQIAENLIKEIAKPYIMKGNTFSQSSSIGIAIYPNVADNFEK 418

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +++ A+ AM+HAK +G N    + +   +  +    I  +L  A E +E  +VY P   +
Sbjct: 419 LIQFADTAMHHAKAKGKNTYSFYSLDYDQKTQRRNSIDRELRNA-EMAEFTIVYQPQFDI 477

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            + EI G+EAL++W  PK GNIS  EFM IAE+   IK I  ++  R  +D         
Sbjct: 478 -NNEIYGVEALVRWQSPKLGNISPEEFMPIAEKNQTIKNIGKWIFIRTIQDWNKLLSLNL 536

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + IN++S  +L    C  +  +I  +      I L  +E+ ++ N + +R ++  
Sbjct: 537 ANNLKLSINVSSVQILQENFCSEVINII--SNIDKHSITLEITETHLLANIDLTRTVISN 594

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNI 909
           + K+GIS  LDDFGT  S L YL  +P D +K +   +     +    I+ +I  +AKN+
Sbjct: 595 MNKLGISFALDDFGTGYSSLKYLANLPIDYLKIDKEFVQNLNIQNNKEIIIAITQLAKNL 654

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               IA+ I        L  +GC++ Q  + + P+ F  + KLL+ +
Sbjct: 655 NKYCIAEGIETLEQFNFLKSIGCNFYQGYYFSKPISFLVLKKLLQSK 701



 Score =  101 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 410 AVLGSG-DIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           A+  S  D +W WD+     +        ILG            W   ++ +D +  +  
Sbjct: 24  ALEHSSLDGLWYWDLENPQNMWLNKTFWQILGYDPDQKKHLASEWQNVVYPDDLNKVKQE 83

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +     +     R +  +    W+      + + NG  LR +G  +DI++ K+   
Sbjct: 84  LAKHLADPSYKYSAIVRYKHRNGSIVWIKCSGIAIRDENGKPLRVLGTRSDISDLKQIEL 143

Query: 528 GILCNAFQDNL 538
            +     QD L
Sbjct: 144 KLKE--TQDFL 152


>gi|65317278|ref|ZP_00390237.1| COG2200: FOG: EAL domain [Bacillus anthracis str. A2012]
          Length = 396

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 206/391 (52%), Gaps = 5/391 (1%)

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D++K IND  G  VGD +L+++ +R+  +      LARL+G+ F I++ + N   
Sbjct: 1   MFLDLDRFKIINDTXGHRVGDLLLIAVAKRLERMATPNMKLARLAGDEFTILIENYNKRP 60

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  + +++  P  +  + + ++ SIG A +  +      +L++A++AMY AK+RG
Sbjct: 61  DVKRMADTIVEAMNEPFEIENQHLQISPSIGIAIYPEAGEDPLSILQHADMAMYEAKNRG 120

Query: 689 GNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    +    ++       I++DL LA+ N E YLVY P I +  ++I+G EAL++W H
Sbjct: 121 KNGSSLYTKELYKKMERKARIEKDLPLALVNKEFYLVYQPQIDITTKKIIGAEALLRWKH 180

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G+I   EF+ I EE   +  +  ++L+   R +  W        + I +N+++K+  
Sbjct: 181 PLLGDIPPCEFIPIVEETPQVIPLGHWVLQESCRQLTIWHS-FGYKDLNISVNLSAKEFQ 239

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            + L E +  +++     P  + L  +E + M + + +   L +L++ GI  ++DDFGT 
Sbjct: 240 QDHLIENISQILTDVKVDPKYVTLELTERIAMIDEKETLSRLKQLKEYGIQTSIDDFGTG 299

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL   P DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +
Sbjct: 300 YSSLAYLSIFPIDTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQL 359

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           K L R  C Y+Q  + + PL     +K L++
Sbjct: 360 KFLQRNNCKYMQGYYFSKPLTSQQFIKFLQK 390


>gi|299069507|emb|CBJ40776.1| putative signal transduction eal-ggdef domains transmembrane
           protein, Diguanylate cyclase/phosphodiesterase precursor
           [Ralstonia solanacearum CMR15]
          Length = 695

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/428 (25%), Positives = 207/428 (48%), Gaps = 7/428 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+P R   L  L + +  S+        +  +D+D   +IN+  G A GD VL  
Sbjct: 268 HDTLTGLPTRLQLLQALDSAIPSSSRRGRP-FALFYLDLDGLGRINEQYGRATGDRVLQI 326

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ + ++  D +ARL  + FG+++ S       A     +   +   + +  R + V
Sbjct: 327 IAERLRQTMRDEDTVARLGSDEFGLLVESLPLPEAAAPIGDKLLFRLREAVEVDGRRLRV 386

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
            ASIG A    +  T+  +L +A+ AM+  K  GGN    +    ++     + I+  L 
Sbjct: 387 AASIGVAIHPYNGATADALLAHADAAMFECKQAGGNAYRFYEPRLNTTAHRVLQIQRALS 446

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A  N +L+L Y P      + + G EAL++W+HP+ G +S +EF+ +AE    I  +  
Sbjct: 447 HAALNGQLFLYYQPKFDAHTQSMTGAEALLRWNHPELGPVSPAEFLPLAERTGTIVELGD 506

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++E + R I+ W D   M P+ I IN++ +  L  +L + +  ++ +   +P R+    
Sbjct: 507 WVIEEVCRQIMHW-DAVGMAPLKIAINLSPRQFLQPDLVQRLSQILHRYQVAPDRLMFEI 565

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM---T 889
           +E+  M +  +S   + +++ +G  + +DDFGT  S LSYL       +K + + +    
Sbjct: 566 TETAAMRDAGQSITAIRQIQSLGFEVAIDDFGTGYSSLSYLQRFRAQQIKIDRAFIGALD 625

Query: 890 GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     AI+R+I  MA ++E T++A+ +     ++ L  + CD +Q   +  PL     
Sbjct: 626 DNPSDAYAIIRAICAMAHSLEMTVVAEGVETGTQMQALVNLRCDQVQGYLLGRPLPARDF 685

Query: 950 LKLLKERF 957
             L+  + 
Sbjct: 686 QTLIDHKQ 693


>gi|322420192|ref|YP_004199415.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
 gi|320126579|gb|ADW14139.1| diguanylate cyclase/phosphodiesterase [Geobacter sp. M18]
          Length = 524

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 219/449 (48%), Gaps = 8/449 (1%)

Query: 519 ITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           I  + K+ E  I   A +D LTG+ NRQ+F D L   ++ +         ++ +D+D++K
Sbjct: 77  IEARHKASELSIREQAVRDGLTGLYNRQAFDDFLAQSIEFARRRHET-VALLFLDLDRFK 135

Query: 578 KINDVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            IND  G  VGD +L     R+    L+  DI+AR+ G+ F ++L   +        A  
Sbjct: 136 LINDRRGHFVGDALLAETAHRLTRCALRGEDIVARVGGDEFAMLLRRPDMPEGPVVMARR 195

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +  +++ P+ +    +  +ASIG A + S      ++ K A++A+  AK +G +    + 
Sbjct: 196 VLDALSEPVQVEGESLKTSASIGIALFPSDAEDPMQLFKMADIALGQAKEQGRSTFCLYG 255

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    R+ ++  L  A+  +EL+LVY P +      +VG+EAL++W HP  G ++ 
Sbjct: 256 GEWREEHDHRIQLEHGLLRALSRNELFLVYQPKLDTTSMRVVGVEALVRWKHPHLGELAP 315

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ +AE+  +I  +  ++L    R    W        + + +N++       EL + +
Sbjct: 316 ASFVPLAEKGGLIWPLTEWVLREACRQAAQWYRSEA-LDLNVAVNMSPAVFSHEELEQAI 374

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  +  +   P R+ L  +E  +M     +  +L RL+++GI++ +DDFGT  S LS L 
Sbjct: 375 ERALHDSGLPPDRLTLEITEQSLMIYEAEALGVLERLQRMGINVQIDDFGTGYSSLSSLK 434

Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           +  F  +K + S ++   ++ +  AI  +I+ M+K ++   IA+ +  E     L+ + C
Sbjct: 435 HYHFQALKIDKSFVSDVVTSSEDAAIATTIMFMSKCLDMEAIAEGVESEAQKDFLSSIDC 494

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961
             +Q  + A P+  + +   +    P  K
Sbjct: 495 RLMQGFYFARPMLPSEMSHFISRLTPKRK 523


>gi|109900412|ref|YP_663667.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702693|gb|ABG42613.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 681

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 220/434 (50%), Gaps = 7/434 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+  + +   A  D LTG+PNRQ F++ L   L  +  D+     +M  D+D +K +N
Sbjct: 249 QLKEQQKAMERLANFDGLTGLPNRQFFMETLRLELAKAKRDER-NLVLMYFDLDGFKGVN 307

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD VL+ + RR   +L+  D+++RL G+ F I+L +E N L++ + +  +   
Sbjct: 308 DSFGHEIGDLVLMEVCRRTKSILRDGDLISRLGGDEFLILLHNEPNDLELYEISERLVSG 367

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + MP  +   E+ V  SIG A  + S    SE + NA++AMY +K  G +    F     
Sbjct: 368 LNMPFEIQSWEVQVGVSIGIARASDSNFNVSEFVSNADIAMYRSKLAGRSTHTVFVPEMM 427

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++  +     +  A++ +E  + Y   +   DE IVG EALI+W   + G +S +EF+
Sbjct: 428 EDNKRRLLIANSIANAIKFNEFSIHYQGKVD-ADENIVGYEALIRWKSDELGFVSPAEFI 486

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+   I +I  ++++R+ +++           I + IN+++ D+ +  L + ++ + 
Sbjct: 487 PIAEQSGKILSITKWVIKRVCQELQQVHALHKNE-IVVSINLSAHDIKNTALVDYIRGMF 545

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++     + I+   +ES  + N + +   L +LR++G S+ LDDFG   S L YL  I  
Sbjct: 546 TRYNVDNASIEFEVTESAYLENFDVANHFLTQLREMGCSIALDDFGAGYSSLGYLTQIEL 605

Query: 879 DTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +T+K +   +     +++   + ++II MAK +   I A+ +      + L   GC  +Q
Sbjct: 606 NTLKIDKQFVDNLNMSKRSTLVTKTIIEMAKQLNLKICAEGVETREQAEFLIENGCHQLQ 665

Query: 937 DSHVASPLGFNSIL 950
               + P     +L
Sbjct: 666 GYLFSKPKSLLEML 679


>gi|332717150|ref|YP_004444616.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325063835|gb|ADY67525.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 736

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/468 (23%), Positives = 222/468 (47%), Gaps = 12/468 (2%)

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             ++     ++ +   +L  IG A  +   K         A +D L+G+ NR     +L 
Sbjct: 264 RPVVFTALVIAGTFFLVLLIIGSAT-LDRLKADEAAAREEALRDRLSGLSNRAGLFSKLN 322

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++  +   D     ++ +D+D +K+IND  G A GD ++  +   +  L+    +LARL
Sbjct: 323 RMVGKA-RHDKTDIKLLYLDLDGFKEINDSYGHAAGDRLIKGVAAALRVLVPEDAVLARL 381

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I +   +   +      A+ +    P ++ ER  ++  SIG +   +  I   E
Sbjct: 382 GGDEFAIAIQGNDVWSEGRKLCQALLELFTEPFSIGERVASIGCSIGTSVSRAGDINGEE 441

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +L+ A++AMY AK  G     ++ +     R +++ ++ DL  A+ N E+ +VY P++  
Sbjct: 442 LLRRADMAMYQAKENGRGRYVAYELKMDALREEKLQLEADLRYAILNDEISVVYQPVVNA 501

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               I G+EAL +W  P +G +    F+  AE   +I+ + L +L +       W     
Sbjct: 502 ATRSITGVEALARWQRPGYGFVPPDIFIAAAETSGLIERLGLLVLRKACETAGQW----- 556

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            P I + +NI+     +      +  +++ T    +R++L  +E   + NPER+   + +
Sbjct: 557 -PSIKLSVNISPVQFRNPAFSGNVADILAATQTPTARLRLEMTEGYFIQNPERASAAIDK 615

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKN 908
           L+++G+ + LDDFG   + + YL    FD +K + SL+    +   +  +L++ + +AK+
Sbjct: 616 LKQLGLHIALDDFGAGFASVGYLRRFGFDRMKIDRSLVMALEQGGRSLEMLQATVALAKS 675

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++  + A+ +  E     L   GCD +Q    + P+    I  +L+E+
Sbjct: 676 LDIPVTAEGVETEEQAAILHLCGCDELQGYLFSKPVAAEEITAMLEEQ 723


>gi|285017786|ref|YP_003375497.1| hypothetical protein XALc_0992 [Xanthomonas albilineans GPE PC73]
 gi|283473004|emb|CBA15509.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 790

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 209/434 (48%), Gaps = 7/434 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR + L  L ++++    D      V+V+D++++K++ND  G 
Sbjct: 345 EQDILHQARHDALTGLPNRTALLQHLQSVVEACQAD-GTTAAVLVLDMERFKELNDSFGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ + ++ PD + RL  + F ++L    ++  +  +A  +   +  P+
Sbjct: 404 DFADQVLVHTGRRLEQAVRAPDRVGRLGSDEFMVVLARC-DATVVDAYAAELLAQLRQPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDR 704
           +L +  I   ASIG A   +    +  +++ A++A   A+  G G  V           R
Sbjct: 463 SLPQAGILADASIGIALIPAHGADADTLMRRADIARQQARQFGSGASVYRDGQDEQHLRR 522

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  DL  A+   E+ L + P I L   E+  +E L++W HP  G I   EF+ +AE  
Sbjct: 523 LRLTGDLHQAIARGEMSLRFQPKIGLARGEVEQVEVLLRWQHPLLGLIGPDEFIALAEHS 582

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            MI+ +  F+L+   R    WR Q       + +N+++ DL D  L   +   +++    
Sbjct: 583 GMIQQLTQFVLDEAMRQQALWRGQGLDLG--LAVNLSALDLNDPGLPAFVSGCLARHGLP 640

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             R+ L  +ES +M + E +  ++ +LR+ G+ L++DDFGT  S L+ L  +P   +K +
Sbjct: 641 APRLTLELTESALMRDVEHALHMMQQLRRCGVRLSIDDFGTGYSSLAQLKRMPVQELKID 700

Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +           I+RS I +  N+   ++A+ +        L   GCD  Q    A 
Sbjct: 701 KSFVLQLAAGSDDAVIVRSTIDLGHNMGMKVVAEGVEHAAAEALLRSYGCDVAQGYLYAK 760

Query: 943 PLGFNSILKLLKER 956
           PL   ++L    +R
Sbjct: 761 PLDQAALLAWCAQR 774


>gi|256785035|ref|ZP_05523466.1| membrane associated phophodiesterase [Streptomyces lividans TK24]
          Length = 701

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 140/639 (21%), Positives = 263/639 (41%), Gaps = 33/639 (5%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           L P           L+  +  R  + ++   L GG V++ +++   ++  +L     +Q 
Sbjct: 19  LTPYLAAAVCTLGILYNVLNGRSVDRVVL--LTGGTVVLALVVRQGIM--LLDNIVLTQE 74

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +          V GS D++            +P  A + G  +  + G        IH  
Sbjct: 75  LAQKENHFRSLVQGSSDVIMIAAPNGILRYVSPAAAGVYGRPAEELVGT--ELAGLIHPE 132

Query: 460 DRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           D       +  F+          + E R R+      W+ +      +  G I      +
Sbjct: 133 DLGCVVHEVRRFLAANPVEEPTTRIECRFRSGGGG-GWLNVESTVNRHHGGLIFN----S 187

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP----TVMVID 572
            D+TE+ +    +  NA  D LT +PNR  F  R+   L      D         V+ ID
Sbjct: 188 RDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGRRASDRGAALRGTAVLFID 247

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K +ND +G   GD++LV   RR+ E ++  D  +RL G+ F  +++ +    + A 
Sbjct: 248 LDGFKGVNDTIGHQAGDELLVQAARRLHEAVRKGDTASRLGGDEFAALIVGDGARDRAAR 307

Query: 633 ------FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +R +++ P  +   E+ V ASIG A +    + + E+L+NA+LAMY AK 
Sbjct: 308 EGHIRELADRLRLTLSQPYLIDGNEVRVNASIGVA-FAEPGLGAGELLRNADLAMYRAKA 366

Query: 687 RGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G   VE +R    +       +   L  A+ + E  L++ P++ L D  I  + A  +W
Sbjct: 367 GGKGRVELYRPQMQQDVVRKAELATRLRAALHDGEFALLHQPVVSLTDGRITSVCAQARW 426

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
              +    + +EF+ + EE      ++ ++L             A    + + I I ++ 
Sbjct: 427 RSSQGVLFTPAEFLRVTEEGDRTAELDRWVLREAVEQAAE--RAAAGLSVSVAIRIGARR 484

Query: 805 LLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           LLD  +    ++AL+++    P  + +  S+       +     L  LR++G+ + LD F
Sbjct: 485 LLDRSMPLGSVEALLTRHGLPPGSLVIELSDIDPRVGLDELDRRLNALRRVGVRIALDGF 544

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + ++ L  +P D +K +  L+ G  E      I   ++ +A ++    +A  +   
Sbjct: 545 GSGYAAITALRRLPVDVLKLDRGLVEGVVESARLHKITSGLLRIATDLGLKSVADGVDLP 604

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
             I  L  MGC + Q    +  L    + + L    +P+
Sbjct: 605 EQIVALRAMGCTHGQGMAFSGALDEYRLRRALAAGHYPV 643


>gi|255656641|ref|ZP_05402050.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296449903|ref|ZP_06891667.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878284|ref|ZP_06902293.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261173|gb|EFH08004.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430732|gb|EFH16570.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 759

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 210/442 (47%), Gaps = 8/442 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KKS E +   AF+DN+TGI N   F       L    + +     ++  DIDK+K +ND
Sbjct: 316 HKKSKEKLEEFAFKDNVTGIGNSNKFNLEGGKFLS---SHEKKNLVLIYFDIDKFKLVND 372

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +   I  + K   + +R+S + F II   +NN   I +    +RK +
Sbjct: 373 RFGYEEGDRVLKEIAEIIKNIFKEQSVFSRISNDNFAIIFEKKNNRASIIEICELIRKKL 432

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +M    L  E+ +  SIG       +   S  L  A +A    K +     E +  +   
Sbjct: 433 SMIKTSLGVELNLIPSIGVYFVEEGETNISTCLDKAMIAKTAVKRKYLKVYEIYAENLKE 492

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   I++++  A++N +  +   P + L   +IVG EAL++W HPK G IS   F+ 
Sbjct: 493 ILIEERDIEQEMHDALKNEQFKVYLQPKVDLSTTKIVGAEALVRWQHPKKGLISPGIFIP 552

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+   I  +++F+  ++ ++   W ++   P   I IN++   L + +    ++ +  
Sbjct: 553 IFEKNGFITELDMFVFTQVCKNFKRWENEN-FPTFPISINLSRVHLENPDFISELERITK 611

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ I++  +ES +  N +    ++  L+ +G  +++DDFG+  S L+ L  +P D
Sbjct: 612 EYEIEPNLIEIELTESAIFDNTKILFKIMQTLKSVGFKISMDDFGSGYSSLNMLKDMPID 671

Query: 880 TVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +       G+ +K   ++ SI+ MAK ++  ++++ +      + L  +GCD  Q 
Sbjct: 672 VLKLDRQFFITVGNAKKSQIVVSSIVQMAKQLDIKVVSEGVETVEQAEFLRLIGCDMAQG 731

Query: 938 SHVASPLGFNSILKLLKERFPL 959
              A P+      KL+ +R+ +
Sbjct: 732 FLFARPMPIEEYEKLILDRYSV 753


>gi|303326850|ref|ZP_07357292.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862838|gb|EFL85770.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 865

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/553 (20%), Positives = 231/553 (41%), Gaps = 24/553 (4%)

Query: 406 RQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +   A+  S D  V+   +       +  +    GL    +      W   +H +DR  F
Sbjct: 322 QLYDALSRSTDAYVYVSKVPSGVFRYSKAMVNDFGLPGEVVPNAAAVWGERVHPDDRAAF 381

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                     R      E+RV+  D Q+ W+  R     + NGD   + G   ++ ++ K
Sbjct: 382 LESNQIIADGRSDTHCVEYRVKNRDGQWVWVRCRGYLERDENGDPALFAGFITNLGQKNK 441

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                      D++TG+ N+  F + +T  +       +    +M++ +D +  IND+  
Sbjct: 442 I----------DHITGLHNKIKFEEDVTEAIHN---RPSAPLRLMLLGVDNFTHINDLHN 488

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD+VL  + +++  +L     L RL G+ F ++L    +S        A+ +S    
Sbjct: 489 RMFGDEVLRIIAQKLQVMLPETASLYRLDGDVFAVVLYE--DSDDAQKLYDAVAESFRYQ 546

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRS 702
                ++     S G+  +     +  E+L+ A  A+  +K  G N +  F       + 
Sbjct: 547 QEYDGKKYFCPLSAGYVRYPEDASSHEELLQAALCALASSKRNGRNRITFFNKQLGRDQK 606

Query: 703 DRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             + + E L  ++E       L Y P +  +   +VG EAL +W+  K+G +S +EF+ +
Sbjct: 607 RALDLTELLRESIECQFEGFELFYQPQVTAIGGRLVGAEALARWNCKKYGAVSPAEFIPL 666

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   +I     ++ +   R    W      P   I +N++   ++ +++   ++  + K
Sbjct: 667 MEHSGLIVPFGQWVFKEALRQCKEWTQ--WRPDFVISVNLSYLQVVSSDMLPFIKTTLEK 724

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  + + + + F+ES ++      + +  ++R +GI + +DDFGT  S LS L   P DT
Sbjct: 725 TGLNAANVVVEFTESCMIRENAVLQEIFRKIRSLGIRIAMDDFGTGYSSLSMLKTSPADT 784

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + + +     +      +R ++ +  +++  +  + +  E +++ +  M  DYIQ  
Sbjct: 785 VKIDRAFVRDILNSRFDATFIRFVVALCHDLDIKVCLEGVEREEELQLVRPMKLDYIQGY 844

Query: 939 HVASPLGFNSILK 951
               P+       
Sbjct: 845 FFGRPMPATVFQN 857



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 101/285 (35%), Gaps = 23/285 (8%)

Query: 410 AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF---- 464
           A+      ++  D   DR+      +  I  L         +         D+       
Sbjct: 26  AMDRVKVCIYITDPQTDRILYMNQFMKDIFQLEKPEGEICWQVLQN-----DKSQRCEFC 80

Query: 465 -RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L + +         E  +R       +       M  S+G ++       DIT+ K
Sbjct: 81  PVNHLSAHLDDHSVYRWEEHNIRTG----RFFENYDSLMRWSDGSLVHLQQSI-DITDSK 135

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A +D+LTG+ NR++ L+RLT  +D +    +    V ++D++  K IND L
Sbjct: 136 RL----RREASRDDLTGLLNRRAGLERLTQAIDEA-RAGDASLIVALLDVNDLKNINDTL 190

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD  +  + R I   L   D   RLSG+ F ++    +     +     +      
Sbjct: 191 GHMVGDAAINLVAREIEAGLSGVDFCFRLSGDEFVVVFHELDRHTAASSLKNVLHNLETR 250

Query: 644 PINLLEREITVTASIGFASWTSSKITSSE-MLKNAELAMYHAKHR 687
              L   E  ++   G          +   +L  A+ +MY  K +
Sbjct: 251 RAALH-LEYELSFCFGCFEVHPDMQLALTAILSKADESMYEQKKQ 294


>gi|126700277|ref|YP_001089174.1| putative signaling protein [Clostridium difficile 630]
 gi|115251714|emb|CAJ69549.1| putative signaling protein [Clostridium difficile]
          Length = 759

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/444 (25%), Positives = 210/444 (47%), Gaps = 8/444 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KKS E +   AF+DN+TGI N   F       L    + +     ++  DIDK+K +ND
Sbjct: 316 HKKSKEKLEEFAFKDNVTGIGNSNKFNLEGGKFLS---SHEKKNLVLIYFDIDKFKLVND 372

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +   I  + K   + +R+S + F II   +NN   I +    +RK +
Sbjct: 373 RFGYEEGDRVLKEIAEIIKNIFKEQSVFSRISNDNFAIIFEKKNNRESIIEICELIRKKL 432

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +M    L  E+ +  SIG       +   S  L  A +A    K +     E +  +   
Sbjct: 433 SMIKTSLGVELNLIPSIGVYFVEEGETNISTCLDKAMIAKTTVKRKYLKVYEIYAENLKE 492

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   I++++  A++N +  +   P + L   +IVG EAL++W HPK G IS   F+ 
Sbjct: 493 TLIEERDIEQEMHDALKNEQFKVYLQPKVDLSTTKIVGAEALVRWQHPKKGLISPGVFIP 552

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+   I  +++F+  ++ ++   W ++   P   I IN++   L +      ++ +  
Sbjct: 553 IFEKNGFITELDMFVFTQVCKNFKRWENEN-FPTFPISINLSRVHLENPGFISELERITK 611

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ I++  +ES +  N +    ++  L+ +G  +++DDFG+  S L+ L  +P D
Sbjct: 612 EYEIEPNLIEIELTESAIFDNTKILFKIMQTLKSVGFKISMDDFGSGYSSLNMLKDMPID 671

Query: 880 TVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +       G+ +K   ++ SI+ MAK ++  ++++ +      + L  +GCD  Q 
Sbjct: 672 VLKLDRQFFITVGNAKKSQIVVSSIVQMAKQLDIKVVSEGVETVEQAEFLRFIGCDMAQG 731

Query: 938 SHVASPLGFNSILKLLKERFPLVK 961
              A P+      KL+ +R+ L +
Sbjct: 732 FLFARPMPIEEYEKLILDRYSLNR 755


>gi|90422975|ref|YP_531345.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104989|gb|ABD87026.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris BisB18]
          Length = 850

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 123/439 (28%), Positives = 218/439 (49%), Gaps = 7/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +   A  D +TG+ NR SFL +L+T    +   D  R  V+ +D+D +K +N
Sbjct: 394 ELQRESAKVARLASLDAMTGLANRVSFLAQLSTAFAAARQHDG-RFAVVCLDLDHFKDVN 452

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L    RR+  +LK  D++ARL G+ F I+L    +   IA  A  + + 
Sbjct: 453 DTLGHPIGDRLLQIAARRLIGMLKAGDLIARLGGDEFAILLAEVCDRDAIAAIAARLIEG 512

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +A   +L      V+AS+G + +  +  ++  M+  A+LA+Y AK  G N          
Sbjct: 513 LAERYDLDGNAAHVSASLGISIYGPATASAEAMMIEADLALYSAKSEGRNGYVFHCAALD 572

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S   +RV + ++L  A+ N EL L Y P + +    I GLEAL++W+HP  G +    F+
Sbjct: 573 SAVRERVRVNDELQAALRNGELTLHYQPQVEVPSGRINGLEALVRWNHPSRGLLYPGAFI 632

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQAL 817
            +AE    I  +  ++LE   R I  W+ +   PP  + +NI++        L   ++  
Sbjct: 633 PVAETTGAIVGVGRWVLEEACRQIKRWQAEGLTPP-RVAVNISAAQFKGAVPLDRQLRDT 691

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++   +P  I++  +E  ++ + + +   + R+R++GIS+ +DDFGT  S L YL    
Sbjct: 692 LAQYDVAPELIEIELTEFALLESTKANSDTIRRVRELGISVAIDDFGTGYSSLEYLRTYR 751

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K     MT         AI+R+ + +A+ +    IA+ +     +  L   GC  +
Sbjct: 752 VNRLKIPQQFMTEVAIESGDAAIVRAALVLARELGMDAIAEGVETPEQLAFLLSAGCRNV 811

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  + + P+   ++  LL 
Sbjct: 812 QGYYFSRPIPAEALRPLLA 830


>gi|221369404|ref|YP_002520500.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
 gi|221162456|gb|ACM03427.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter sphaeroides KD131]
          Length = 881

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 121/568 (21%), Positives = 239/568 (42%), Gaps = 21/568 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + + +     +  +  S   +   +     V    +   +L L        +  
Sbjct: 317 DRKVLERELATRNAFLTAVLQTSVSAIVALNAEGGIVYANDEARRLLVLQPHRGGLRMEA 376

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDI 509
            L  +  + R      + S +    G   ++ R  +R  D QF  + I   P+  +  + 
Sbjct: 377 VLETL--DGRPLPEADMPSALVRATGAPLHDLRYAIRRPDGQFGILSINAAPLPQAADE- 433

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            R +    DIT  + S E +   A +D LTG+ NR++  D + T L  +A        ++
Sbjct: 434 ARIVISVTDITHAEASAERLRRQAAEDPLTGLANRRALADAVETRLTEAA-----PFALV 488

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K +ND+     GD VL     R+  +     ++AR+ G+ F ++     ++  
Sbjct: 489 MLDLDNFKAVNDLQRHDTGDAVLRIAADRLRAVAGADCLVARMGGDEFMVLAPG-TDAAS 547

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A A+R +I+ PI +  + + + AS G A       + + ++  A++A++ AK  G 
Sbjct: 548 APRLAEALRAAISAPIEVGRQPVHLAASAGIALHPEHGTSMALLMTGADIALHAAKRAGR 607

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N       + F ++     I + L   VE   L LV+ P  R       G EAL++W  P
Sbjct: 608 NRSVLLSQAQFAAEARRSAITQALAADVEAD-LRLVFQPQFR-ACGAFDGAEALLRWTDP 665

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I  +EF+ IAEE  +I+ I+  +    AR +  W  +       + +N +++    
Sbjct: 666 RLGEIGPAEFIPIAEEAGLIQRIDAHVAVLAARQLGLWARRGWRH--RLAVNASAQTFAR 723

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E +   +++    P ++ +  +E+ +      +   +  LR+ G+ + +DDFGT  
Sbjct: 724 AGFAEELLQHLAEEDVCPQQLVVELTETSLATLSSVADHNIATLRRAGVGIAIDDFGTGY 783

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           + LSYL  I    +K +   + G           ++++I+ +A  +   + A+ +  E  
Sbjct: 784 ASLSYLHRIEATEIKIDRGFVAGLETAERRDSKPLIQAILSLAHALGLAVTAEGVETERQ 843

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
              L+  GCD +Q   +  PL   +   
Sbjct: 844 RSWLSAEGCDRLQGYLLGRPLPVEAFEA 871



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 65/226 (28%), Gaps = 25/226 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               G    V++           +GL +      +    +         +   L      
Sbjct: 126 MARHGIRALVMMPLTDGTALTGVVGLSLFRARPPVVPAEMALTQSIADAMGAALARRDAE 185

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +  +A    ++ +  + ER +       ++V   D  +  V          G +  ++ G
Sbjct: 186 RRAVAARTAARDVARNLERVARVTELMTNLVIVTDPEQQIVWVNRAFEAHTGHSLDAIRG 245

Query: 448 PIRNWLPYI-----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             R++   +                + +        + Y      A  Q +W+     P+
Sbjct: 246 --RDFAEVVRGPGTDPGMCAAVAEAIRTCSSCEGETVNY-----TASGQPYWVRFNAHPL 298

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           S+++G    +  +   IT++K                 +  R +FL
Sbjct: 299 SDADGRYAGHASVETVITDRKVLERE------------LATRNAFL 332


>gi|294011328|ref|YP_003544788.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674658|dbj|BAI96176.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 655

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 213/438 (48%), Gaps = 11/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +        A  D+LTG+ NR +   RL  + D     D     V  +D+D++K+IN
Sbjct: 207 EKTQLAVKFERLARFDSLTGVENRMAMQMRLREMFD-GRRSDKDPMAVFWMDLDRFKEIN 265

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L  +  R+   L     +AR  G+ F +I     +  +    A  +   
Sbjct: 266 DSLGHMIGDQLLCRVAERLSHALDGRGHVARFGGDEFVLICPG-ADRSEAERIAGDIMAE 324

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                ++    + VTAS+G A        S E+L++A++A+Y AKH G N    F  S  
Sbjct: 325 FTHDFDVGGYLLGVTASMGIAVAPEDGQDSDELLQHADMALYQAKHAGRNRHAQFTWSMK 384

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++  L  A+ N EL L Y PI      +I   EAL++WDHP  G IS +EF+
Sbjct: 385 ERQNRTYDLEMGLRSAMANKELMLHYQPIFDTRSGKIAICEALMRWDHPTLGRISPAEFI 444

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI+ I  + LE+  +D + W        + + +NI+   +  + L   + A +
Sbjct: 445 PIAESCSMIEPITAWALEQACQDAMEW-----DENVRVAVNISPVLIKSDGLPRAVIAAL 499

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++     R++L  +ES+ + +  R+ L+L  L++IG+ L LDDFGT  S L YL    F
Sbjct: 500 MRSGLKARRLELEVTESIFLEDSGRTNLILSDLQRIGLRLALDDFGTGYSSLGYLRDYAF 559

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S M G     +  AI +S+  +A  ++   +A+ I  +  ++    MG   +Q
Sbjct: 560 DTIKVDQSFMRGVEGNARHRAIAQSVAYLAHALDVETVAEGIETDDQLRCAREMGFTNVQ 619

Query: 937 DSHVASPLGFNSILKLLK 954
              ++ P+    +L++++
Sbjct: 620 GFVLSRPVPAPQVLEMMR 637


>gi|27379175|ref|NP_770704.1| hypothetical protein blr4064 [Bradyrhizobium japonicum USDA 110]
 gi|27352325|dbj|BAC49329.1| blr4064 [Bradyrhizobium japonicum USDA 110]
          Length = 689

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 208/441 (47%), Gaps = 6/441 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +L+ +   A  D LT +PNR+S  +RL   L   A   +       ID+D +K IND  G
Sbjct: 237 ALDRLGHMASHDPLTSLPNRRSLSERL-VTLSGDAGSPDSLIAFCFIDLDDFKGINDTFG 295

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD  LV ++ R+ E ++  D +ARL G+ F +I    +N      FA  +  +I+ P
Sbjct: 296 HDAGDKFLVHISGRLREAVEPQDWVARLGGDEFVVIRPEVSNEATAQAFARHLLAAISEP 355

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702
           I L ++++   ASIG A   +     S +   A++A+YHAK +  G   V +  +     
Sbjct: 356 IRLHDKQVVPRASIGLAVRRADDPELSHLPALADIALYHAKTKAPGTVAVLNEALQRDYR 415

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  ++  +       +  + Y   + L  + +VGLEALI+W HP++G I   EF+ + E
Sbjct: 416 RRRELELAIPTGFAEGQFEVWYQSQVDLDSQGVVGLEALIRWRHPEYGVIGPGEFLSLIE 475

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
                  +  ++L    R +      A  P I I IN+   +L D+ L   ++    +  
Sbjct: 476 RSGNNARLTRYVLTDACRALR-HLAAAGRPDIRIAINLPPSELADHSLAAELRETCQRFG 534

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            + S ++L  +E  ++ N   +   L RLR++G ++ LDDFGT  S L++L   P D VK
Sbjct: 535 VAASSLELEITEGSLINNIASASETLHRLRRLGATIALDDFGTGYSSLAHLRRFPLDKVK 594

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + ++    + +  AI+  I  +A  +  T++A+ I        +  MG    Q  H 
Sbjct: 595 IDKAFISEIPDSAEDKAIVGVIASLAGTLGLTLVAEGIERPEQADAMREMGVMLGQGYHY 654

Query: 941 ASPLGFNSILKLLKERFPLVK 961
             P    ++L+ L+ +    +
Sbjct: 655 HRPQPLAAVLQWLEGQAAGSR 675


>gi|188590088|ref|YP_001920119.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251778076|ref|ZP_04820996.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500369|gb|ACD53505.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243082391|gb|EES48281.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 584

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/564 (22%), Positives = 249/564 (44%), Gaps = 35/564 (6%)

Query: 422 DIVRDRVTTTPDIATI-LGLASGSMHGPIR-------NWLPYIHINDRDNFRTILDSFVG 473
           DI    +   P    +                      +L YI++ D +  + I    + 
Sbjct: 18  DINGITMFWNPLKDELTFDYKIVDFLEDYEIDNKKINQFLNYIYLEDLNKVKDIFKEDLK 77

Query: 474 Y---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYIGIAND 518
                +  L   +R++  +N   + I   + +   +G  L             Y     D
Sbjct: 78  KIYDSKKHLLTHYRIKN-NNNILYFIFVGKVVKKYDGYTLMGIHYCFENLDSNYWISEID 136

Query: 519 I-----TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           +     +E+    + I      D  T +PN   F   +   L      + ++  ++++++
Sbjct: 137 VLYKKLSEEYFINQKITSLIECDRTTELPNCYYFKRTVMEFLKECKE-EQVQCAMLMLNL 195

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +N+  G   GD  L     +I  L+   D++ R SG+ F I +    +  +++  
Sbjct: 196 DNFKYVNESFGHEFGDVALRVAANKILSLVSERDLVCRYSGDTFLIFIPDITDLNEVSVL 255

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + KS    I + E+E+ V+ SIG + +  + +    +LKN++ AMY AK  G N   
Sbjct: 256 CKKIVKSFDESIIIDEKEVYVSVSIGASLYPYNGLDFETLLKNSDAAMYVAKGNGKNEYN 315

Query: 694 SFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F             +++ L  A++N E+++V+ P + L D  +   EAL++W+    G 
Sbjct: 316 FFNDKISIELNRVYSLQKGLRYALDNKEIFIVFQPKVTLDDFLVRSFEALVRWNSNDMGV 375

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  EF+ IAE   MI  I  F+LE + + +    ++       I +N++   L ++ + 
Sbjct: 376 VSPDEFIPIAENTKMIIPIGSFVLEEVFKKVRILINE-GYLNFKIAVNLSEMQLREDSIV 434

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  I K   SP+ I++  +ES++M + +++  +L  ++ +GIS+ LDDFGT  S L+
Sbjct: 435 SDLKRFIYKYRVSPNYIQVEITESMLMKSFDKNIKILNEIKDLGISIALDDFGTGYSSLN 494

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + + +       K   I+ +II ++  +   +IA+ +  +  +  L  
Sbjct: 495 YLTKLPIDALKIDRTFVVDLEKNSKNKCIIENIINLSHQLGIEVIAEGVESKQQVDYLKE 554

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
           + CD +Q  + + P  F  I  ++
Sbjct: 555 ISCDVVQGYYYSKPERFEKIKNMI 578


>gi|254976256|ref|ZP_05272728.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255093642|ref|ZP_05323120.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255315391|ref|ZP_05356974.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255518056|ref|ZP_05385732.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255651172|ref|ZP_05398074.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260684238|ref|YP_003215523.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687897|ref|YP_003219031.1| putative signaling protein [Clostridium difficile R20291]
 gi|306521019|ref|ZP_07407366.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260210401|emb|CBA64801.1| putative signaling protein [Clostridium difficile CD196]
 gi|260213914|emb|CBE05963.1| putative signaling protein [Clostridium difficile R20291]
          Length = 759

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/444 (25%), Positives = 210/444 (47%), Gaps = 8/444 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KKS E +   AF+DN+TGI N   F       L    + +     ++  DIDK+K +ND
Sbjct: 316 HKKSKEKLEEFAFKDNVTGIGNSNKFNLEGGKFLS---SHEKKNLVLIYFDIDKFKLVND 372

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +   I  + K   + +R+S + F II   +NN   I +    +RK +
Sbjct: 373 RFGYEEGDRVLKEIAEIIKNIFKEQSVFSRISNDNFAIIFEKKNNRESIIEICELIRKKL 432

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +M    L  E+ +  SIG       +   S  L  A +A    K +     E +  +   
Sbjct: 433 SMIKTSLGVELNLIPSIGVYFVEEGETNISTCLDKAMIAKTTVKRKYLKVYEIYAENLKE 492

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   I++++  A++N +  +   P + L   +IVG EAL++W HPK G IS   F+ 
Sbjct: 493 TLIEERDIEQEMHDALKNEQFKVYLQPKVDLSTTKIVGAEALVRWQHPKKGLISPGVFIP 552

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+   I  +++F+  ++ ++   W ++   P   I IN++   L +      ++ +  
Sbjct: 553 IFEKNGFITELDMFVFAQVCKNFKRWENEN-FPTFPISINLSRVHLENPGFISELERITK 611

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ I++  +ES +  N +    ++  L+ +G  +++DDFG+  S L+ L  +P D
Sbjct: 612 EYEIEPNLIEIELTESAIFDNTKILFKIMQTLKSVGFKISMDDFGSGYSSLNMLKDMPID 671

Query: 880 TVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +       G+ +K   ++ SI+ MAK ++  ++++ +      + L  +GCD  Q 
Sbjct: 672 VLKLDRQFFITVGNAKKSQIVVSSIVQMAKQLDIKVVSEGVETVEQAEFLRFIGCDMAQG 731

Query: 938 SHVASPLGFNSILKLLKERFPLVK 961
              A P+      KL+ +R+ L +
Sbjct: 732 FLFARPMPIEEYEKLILDRYSLNR 755


>gi|325261538|ref|ZP_08128276.1| putative sensory box protein [Clostridium sp. D5]
 gi|324032992|gb|EGB94269.1| putative sensory box protein [Clostridium sp. D5]
          Length = 737

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 118/556 (21%), Positives = 226/556 (40%), Gaps = 22/556 (3%)

Query: 403 DGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           D E    A++ S  D ++  ++        P +    GL    +      W   IH +D 
Sbjct: 194 DKEHLYDALMSSTDDYIFVGNMKTGVFRYPPAMVEEFGLPGEVVENAAAFWGGKIHPHDE 253

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
            +F          R      E+R R A  ++ W+  R R + +  G    + G+   IT 
Sbjct: 254 RSFLESNQEIADGRTESHDIEYRARNARGEWIWLRCRGRMIRDEKGRPNLFAGM---ITN 310

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++ +        D++TG+ NR  F       L      +NL   +M++++D ++ IND
Sbjct: 311 LGRNNQ-------IDHMTGLYNRFEFEGDAKKYLVDKQGTENLE--IMLLNMDSFRNIND 361

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           +   + GD +L    ++I E L     + R+ G+ F ++L++  +  +  +    +++  
Sbjct: 362 LNNRSFGDAILKITAQKIAEFLPSNAKVYRMDGDEFAVLLLN-GSREEGREVFRRIQQHF 420

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   R+   T S GFAS+        E+L+ A  ++ ++K +G N +  F     +
Sbjct: 421 RKFQEYNGRKYYCTMSAGFASYPDDSDDYQELLQYASYSLEYSKLKGKNRMTEFSSEILQ 480

Query: 702 SDRVMIK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S    ++  E +  ++E       L Y P +    + + G EAL +W    +G++  SEF
Sbjct: 481 SRGRKLEMTELVRESIERGFAGFSLNYQPQMDAAAKTLCGAEALARWQCTAFGDVPPSEF 540

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  MI     ++     R    W      P   + IN++   LL+ +    +   
Sbjct: 541 IRILEQSGMIIKAGKWIFTEAVRQCREWIK--RKPDFRMSINLSYPQLLEEDFVTFVLGT 598

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E+ ++        ++ +L++ GI   +DDFG   S L  L   P
Sbjct: 599 LDAHQLPYENIILELTETYLIEQDGIVHDIMEKLQEKGIQTAMDDFGMGYSSLFELKNTP 658

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +TG T        +RSI  +  ++  T+  + +  E +      +G D I
Sbjct: 659 ADIIKIDQGFVTGLTTDLFTSTFIRSITELCHDVGKTVCLEGVKTEEEYNVAKEIGIDLI 718

Query: 936 QDSHVASPLGFNSILK 951
           Q  +    +  N    
Sbjct: 719 QGYYFGKAVPPNEFQA 734



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 8/188 (4%)

Query: 516 ANDITEQKKSLEGILCNA--FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
             DI   K S E     A    D+LT + NR++  +RL  +L+ +   +     V + D+
Sbjct: 1   MQDI---KNSEEYKSLLARANYDDLTKVLNRRAGRERLDNLLEKA-RGERKMLVVSLCDV 56

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           +  K+IND  G   GD++L  +   +   +K  DIL RLSG+ F +   +EN        
Sbjct: 57  NDLKQINDRYGHREGDNMLRYVASAMSREMKENDILFRLSGDEFAMAFYNENQRN-AERR 115

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
              +   +       +     + S G    +     T  ++L+ A+  MY  K       
Sbjct: 116 MQDILAYLNEKKKYRKVVYETSFSYGLVEIYPEEFYTVEDLLEKADGRMYIQKRNYHILR 175

Query: 693 ESFRVSSF 700
              R+   
Sbjct: 176 AKQRLEQQ 183


>gi|41407047|ref|NP_959883.1| hypothetical protein MAP0949 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395398|gb|AAS03266.1| hypothetical protein MAP_0949 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 617

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/450 (25%), Positives = 199/450 (44%), Gaps = 7/450 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +  + E +   A  D+LTG+ NR++ +  LT  L      +     V  +
Sbjct: 154 VAALFAQLQARIAAEERLRYLAEHDDLTGVYNRRALVAHLTERLA---AGNPGPVAVFYL 210

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +    +RI E      ++ARL G+ F +I      S    
Sbjct: 211 DLDRLKPINDYLGHTAGDWFIRVFAQRIEECAGEQSMIARLGGDEFVVIPHQPMASEAAE 270

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   +   + +    I+ T SIG A  T      +++L+ A+ A+  AK  GGN 
Sbjct: 271 AFARRLSTLLCDRLTIGGHVISRTVSIGLAVGTPGADNCTDLLRRADEAVLTAKRAGGNQ 330

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
                            I+  L   +E+  L L Y P + L    +VG EAL++W HP W
Sbjct: 331 TAVSTDDMSLKRAFRNDIELHLQGDIESEGLLLHYLPEVDLWTGAVVGAEALVRWRHPIW 390

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+ +AE   +   +   ++     D   WR         + IN++   L+   
Sbjct: 391 GLLLPDSFIGVAESTNLGAELGGGVMRSACADFSRWRANGVGHGAMLRINVSPIQLISRG 450

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +   I +       + L  +E  V+ + E +R  L  L+++G+ + +DDFGT  ++
Sbjct: 451 FVETVADTIGEFGIDAGSVCLEITERAVVHDTETTRKTLSELKEVGVQIAIDDFGTGYAV 510

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P D +K +   +   G+    +AI+R+II +A+     ++A+ +        L
Sbjct: 511 LSHLKSLPVDMLKIDAGFVREVGTDAGDLAIVRAIIGLAEAFGLEVVAEGVETPAAALTL 570

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            + GC   Q   ++ P+   ++  LL  R+
Sbjct: 571 MQHGCHRAQGFLLSRPIPGEAMEALLSARW 600


>gi|290957189|ref|YP_003488371.1| membrane associated phophodiesterase [Streptomyces scabiei 87.22]
 gi|260646715|emb|CBG69812.1| putative membrane associated phophodiesterase [Streptomyces scabiei
           87.22]
          Length = 1016

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/639 (20%), Positives = 270/639 (42%), Gaps = 33/639 (5%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           L P           L+  +  R  + ++   +    V++ +++   ++  +L     +Q 
Sbjct: 361 LTPYLAAAVCTLGILYNVLNGRRVDRVVL--ITACTVVLALVVRQGIM--LLDNITLTQE 416

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +          V GS D++            +P  A + G  +  + G        IH  
Sbjct: 417 LAQKENHFRSLVQGSSDVIMIAAPNGILRYVSPAAAGVYGRPAEDLVGK--ELASIIHPE 474

Query: 460 DRDNFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           D       +  F+          + E R ++      W+ +      +  G IL     +
Sbjct: 475 DLGCVVHEVRRFLAASPAEEPTTRIECRFKSGGGG-GWLNVESTINRHHGGLILN----S 529

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL----RPTVMVID 572
            D+TE+ +    +  NA  D LT +PNR  F  R+   L    + D         V+ ID
Sbjct: 530 RDVTERVRLQAQLQHNAEHDPLTDLPNRALFTKRVRQALSGRRSSDRGAALRNTAVLFID 589

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK--- 629
           +D +K +ND +G   GD++LV   RR+ + ++  D  +RL G+ F  +++ + +  +   
Sbjct: 590 LDGFKAVNDTIGHQAGDELLVQAARRLQDAVRQGDTASRLGGDEFAALIVGDGSHDRVDR 649

Query: 630 ---IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              I + A  +R +++ P  +   ++ V ASIG + +    + + E+L+NA+LAMY AK 
Sbjct: 650 ERHILELADRLRIALSQPYTIDGNDVRVAASIGVS-FAEPGLGAGELLRNADLAMYRAKA 708

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G   VE ++    +       +   L  A+ + E  L+  P++ L    I  +    +W
Sbjct: 709 SGKGRVELYKPQMQQDVVRRAELATRLRAALHDGEFMLLNQPVVELSTGRISSVATAARW 768

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
              +    + +EF+ ++E+      +  +MLE+            +   + + + ++++ 
Sbjct: 769 RSSQGVLFTPAEFLRVSEDSEKTAELGRWMLEQAVEQAAD--RLTSGLNVPVSVRMSARR 826

Query: 805 LLDNELCE-GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           LLD  L    ++ L+++       + +  S++ + G P+     L  LR++G+ + LD  
Sbjct: 827 LLDRSLPPGSVETLLTRHGLPAGSLVVELSDTELKGPPDELERRLNHLRRLGVRIALDGL 886

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + ++ L  +P D +K +  L+ G   + +   I R ++ +A ++    +A  +   
Sbjct: 887 GSGQAAVTALRRLPVDVLKLDRGLVEGIVESTRLQKITRGLLRIADDLGLESVADGVDLP 946

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
             +  L  MGC + Q +  + PL    + + L    FP+
Sbjct: 947 EQVVALRAMGCTHGQGAAFSGPLDEYRLRRALSRGHFPM 985


>gi|148975770|ref|ZP_01812601.1| hypothetical protein VSWAT3_26681 [Vibrionales bacterium SWAT-3]
 gi|145964843|gb|EDK30095.1| hypothetical protein VSWAT3_26681 [Vibrionales bacterium SWAT-3]
          Length = 646

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/539 (23%), Positives = 229/539 (42%), Gaps = 39/539 (7%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSM------HGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           +D   + V+     +   G    ++            WL   H       R IL+     
Sbjct: 132 FDRSGNVVSANSAFSQAYGSPFTTLSEFVSSQETADQWLFSAH-----KGREILEEVS-- 184

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                          N+ H   ++ + + + +  +L         T+QK+ L     +A 
Sbjct: 185 -----------CHIGNKTHHFDVQGKWLFDKSQLLLNLTCT----TKQKEKLIKARYHAE 229

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT + NR+   + L T +            +M +D+D +K +ND  G +VGD +L  
Sbjct: 230 HDCLTELYNRRGITNLLETSIAY-----RSPFELMFVDLDGFKLVNDTYGHSVGDQLLKQ 284

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EIT 653
           +  R+ +L+    ++ R  G+ F +I  S  N   I      +  +I    ++     ++
Sbjct: 285 VGERLKQLINETCMIGRFGGDEFIVIAHSCRN-QNIPLLCTRIIDAINQSFHISGIGSLS 343

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711
           V  SIG A +  + +    +LK A +AM+ AK  G N  ++F  S  ++    ++    L
Sbjct: 344 VGCSIGTAHFPDNAMDQESLLKQAGMAMHTAKDNGRNRFQTFTPSLAQALHRKVEIRHRL 403

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E+  L L Y PI+    +++ G EAL++W     G I   EF+ +AEE   I  + 
Sbjct: 404 TQALESEALALHYQPIMDTCGDKVKGFEALLRWSDKDLGMIEPDEFIALAEETGQIVPLG 463

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L    + +  W  +     + + INI+    +     E + A+++     P  I L 
Sbjct: 464 KWVLNSALKQLALWHREF-DSQLMMSINISGSQ-MHATFAEQLSAMLNFYHIQPKNIALE 521

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES ++      R  L  + K+G+ L LDDFGT  S LS L  +P  TVK + S + GS
Sbjct: 522 ITESSMLFKHGEVRQALTDISKLGVELHLDDFGTGYSSLSMLHDLPISTVKLDKSFVHGS 581

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +   AI+++   +   +   ++A+ +  E   + L   G  Y+Q    + P+  N + 
Sbjct: 582 HKGSKAIVQATRAICDKLGLKVVAEGVETETQKEFLIDSGYHYLQGFLFSEPIPSNEVE 640


>gi|261250109|ref|ZP_05942686.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260939613|gb|EEX95598.1| sensory box/GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 1001

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/579 (19%), Positives = 219/579 (37%), Gaps = 16/579 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             + + +     + +F      S        ++   D              +LG  S  +
Sbjct: 429 EARDITSRKITEERLFQREANLSHYYDQQPIMMLTLDDQNRIQQVNQFAEQLLGYTSDQL 488

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G       Y+H +D    R +L       +G  + E   R  D    W+   IRP+   
Sbjct: 489 LGHRLRDF-YLH-DDAIIPRQVLLQPKQALKGVWRREIEYRHCDGHTVWIRENIRPLV-- 544

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +    + +  D+T  ++  + +   A  D LTG  +R  F   L   L    +     
Sbjct: 545 --ETGHLLIVGEDVTATRQLSDQLQYQAEHDLLTGTYSRNYFETELVKALAEVESYTRTH 602

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ ID+D+ K +ND  G   GD  +      + E+L +  ILARL G+ F I+L    
Sbjct: 603 -AMLYIDLDQLKVLNDTAGHEAGDAAIQFCASMLEEVLPYNTILARLGGDEFAILLRDCT 661

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   +  +      P    +  + +  SIG      + ++   +   A+ A + AK
Sbjct: 662 EVDAKKLASTIINTLSEHPFIWEDIRLNLNCSIGIRLIDHTALSPQMVHAQADTACHVAK 721

Query: 686 HRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEA 740
             G N    + +      R   + +    +  A+ N  + L    I+ L D E  +  E 
Sbjct: 722 EEGRNRYNLYCLDDKELRRREQEMESVNLVHDALANQRIELFAQQILSLTDSESGMHFEI 781

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+  + +   IS   FM  +E   +   ++  ++ +    +           +   IN+
Sbjct: 782 LIRIKNAQGEYISPGIFMPASERYNIAHLLDKQVVTQTLDWLAENDKALEQLSL-CSINL 840

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   + + E    +   +  +     +I L  +E+  M N  ++     +L+++G  + L
Sbjct: 841 SGHSMGNKEFIAFLLNKLETSTVPCEKICLEITETAAMSNMNQAIEFFTQLKELGCRIAL 900

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S   YL  +P D VK +G  +           ++RSI  +A+ +    +A+ +
Sbjct: 901 DDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEMDHLMVRSINDLARQMGKKTVAEFV 960

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKER 956
                I++L  +  DY Q   +  P     +  +L+ ++
Sbjct: 961 ENTRIIEQLMELQVDYAQGYIIGKPKPLAELVEELMHQQ 999


>gi|209519892|ref|ZP_03268674.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209499652|gb|EDZ99725.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 649

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 216/451 (47%), Gaps = 10/451 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G     +    D      + E     A QD+LTG+PNR    + L      S    + 
Sbjct: 185 AAGFFTVALRSHRDTVALLLARENSHRLARQDSLTGLPNRARLSELLLERTGESRARQDQ 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ ++L   D + RL+G+ F  I    
Sbjct: 245 SFAVLLIDLDGFKAINDSLGHAAGDQILQEAATRLRDVLPSGDQVGRLAGDEFVAISDGS 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +   A  + +++A P  L E  + + AS+G A +     T  ++L  A+ A+Y  
Sbjct: 305 GQLRDVRVLADRIVRTLARPFVLSEALVHIGASVGIALYPEHAQTGPQLLICADRALYSV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F      SD    +++ DL  A+++ + L + Y PII L    + G EAL
Sbjct: 365 KRSGKSAFAVFDAEKHVSDENLSLLRSDLEGALQSFNGLRMEYQPIIDLNTGAVAGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +S S F+  AE   +I A+  ++L +   + ++WRD      + + +N++
Sbjct: 425 IRWTHPTRGELSPSAFIPTAERTGLILALGEWVLLQSCAEAVTWRD-----KVIVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L ++     + A++ KT   P+R+ L  +E+ ++ + E +R  + RLR +GI L LD
Sbjct: 480 PVQLREDSFASTVTAILRKTRLPPTRLNLEVTETALLNDDEVTRRNITRLRALGIGLALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  +    +  A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFSFDKLKIDSSFVREAVHGRESAAVVRGIVALAREIGMPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +  +  +   GC + Q   +  P+    I 
Sbjct: 600 NQEQLNFVRVCGCTHAQGFLLGKPMCSGEIE 630


>gi|328948876|ref|YP_004366213.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
 gi|328449200|gb|AEB14916.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
          Length = 588

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 191/436 (43%), Gaps = 15/436 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E +L  A+ D+LT + NR      +   +  + T+ N +  +++ DID  K IND 
Sbjct: 154 QQLNEQLLFAAYHDSLTDLYNRSWLSTMMKVQIKET-TEKNEKFGILLFDIDNMKDINDS 212

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L  +   +  +        R  G+ F ++  +  +  +  + +    + + 
Sbjct: 213 RGHNAGDELLKQVATILKLMESKTVTATRFGGDEFVLLYKNIKDRDEAIEISKKALRFLN 272

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                +            + +      + ++LK A++A   AK  G N+V  F       
Sbjct: 273 AEGIGISGG--------ISIFPDDSKKTEDLLKFADMAKIEAKKNGKNNVACFHSLMQEK 324

Query: 703 D--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ I+  +  A+ +    L Y P      +E+ G EAL++W     G IS  +F+ +
Sbjct: 325 FLSKLNIETKMSKAMASRNFQLYYQPQFDAKTKELRGFEALLRWYDSDLGWISPEQFIPL 384

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  ++  +  +++      I  W  + +   I I +NI+    +  +  E +   I K
Sbjct: 385 AEETHLVVPLGDWVMTTALATIKEWEMKFSFNGI-ISVNISPVQFVQEDFIEKLFKKIEK 443

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +      +++  +E V++ N E +   L ++R+ G+ L+LDDFGT  S L YL  +P  T
Sbjct: 444 SGIDKKHLEIEITEGVLIDNVEDTISKLNKIREQGVGLSLDDFGTGYSSLRYLQLLPLTT 503

Query: 881 VKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           +K + S ++   EK      +  SII +   +    IA+ +  E  +K + +  C  IQ 
Sbjct: 504 LKIDKSFVSNIAEKDGFEAKLTESIISLVSKMGLNTIAEGVENEEQLKMIQKFNCRTIQG 563

Query: 938 SHVASPLGFNSILKLL 953
             +  P+      KLL
Sbjct: 564 FLLGKPMPKEQCEKLL 579


>gi|78486347|ref|YP_392272.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364633|gb|ABB42598.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 703

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 126/557 (22%), Positives = 244/557 (43%), Gaps = 21/557 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILD 469
           +  S    +  +                GL+  +++     +WL    ++ +  F  ++ 
Sbjct: 144 MEASYAGQFVTNSQGYIKQPNHAFCAYTGLSHQALNELTYLDWLKQ-QVSFKVPFEKVVS 202

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           S +  +      E ++  A +   + ++ +  + + + ++  +IG+  D T+ + +   I
Sbjct: 203 SLLKEQ--FWTGEVQIHTAGDSTFYAVLSLSMILDDSKNVEHFIGVLQDTTDIRAAQAEI 260

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+ N+    DR+   L    T       + +I++D +K IND  G   GD
Sbjct: 261 QQLAYFDKLTGLANQTLLYDRIEKTLQD-KTSATPYRALYLINLDGFKIINDTFGHTTGD 319

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-----LKIADFAIAMRKSIAMP 644
            +L+ + +++ + L    +LARLSG  F ++  S+          I  +   + ++I   
Sbjct: 320 QLLMLVAQKLKQQLPEEAMLARLSGGSFAVLYTSKTQDVQYAKEDIHQYGELILETIDDR 379

Query: 645 INLLEREITVTASIGFASW---TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             L +  I   ASIG  ++       + S ++ + A +AM+ AK  GGN    F  +  +
Sbjct: 380 YKLEKHSIHSAASIGICTFALNQPVSLDSDQLTRYANMAMHEAKKLGGNQAYLFEDTLIQ 439

Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +  ++  E L  +  + E  + +   +   D++IV  E L++W HPK G +S S+F+ 
Sbjct: 440 KAKRRLELIEALNHSELDDEFQIYFQAQVD-KDKKIVSAETLLRWVHPKLGVVSPSKFIP 498

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE   I  I L++L +      +W        I I IN++     +    E +  LI 
Sbjct: 499 VAEEGRQIIKIGLWVLHKAFLQAKAWN--TVHRSIRIAINVSPVQFHEQSFIEMIIGLIK 556

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   P  I L  +E V++ N + +   +  L  +G  +++DDFGT  S LSYL  +P  
Sbjct: 557 FTQVDPKTITLELTEGVLIKNAKLALQKIQHLVSLGFEISIDDFGTGYSSLSYLQKLPIH 616

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI-Q 936
            +K + + +          AI+ SII +A + +  I+A+ +      + L     + + Q
Sbjct: 617 ELKIDQTFIKQVPGNIDDEAIVNSIIQLASSKQLKIVAEGVETNEQAQYLINRNPEMVLQ 676

Query: 937 DSHVASPLGFNSILKLL 953
               + PL      + L
Sbjct: 677 GYLFSQPLPAVEFEQQL 693


>gi|313498813|gb|ADR60179.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1]
          Length = 771

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 100/435 (22%), Positives = 199/435 (45%), Gaps = 7/435 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +         A  D+L+G+ NR+ F++  +  L            ++ ID+D++K 
Sbjct: 324 IVRLEDEHRRSSHAAATDHLSGLHNRRQFVEVASQALTR-QRGKRRLMAILFIDMDRFKS 382

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L ++  RI  LL+  D  +R  G+ F ++L  E +  +I  +   + 
Sbjct: 383 INDSLGHKIGDLLLQAVAGRIQRLLEPGDEASRFGGDEFVVLLAGERSEEQINAWVHELV 442

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + ++    L  +E+  + S+G +           ++++A+ AMY AK  G      F   
Sbjct: 443 QKLSAAYALDGQEVNTSPSVGVSICPRDGQDIDSLIRSADAAMYSAKQAGRAQYRFFDPS 502

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +        +++    A+   +  L Y P +RL   ++ G EAL++WDHP++G +    
Sbjct: 503 LNLADIQAFTLEQAFGSALAERQFVLHYQPQMRLDTHQVQGYEALVRWDHPEFGLLYPDR 562

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +   +L+     + SW  Q       + +N+++  L   +  + + +
Sbjct: 563 FIDLAERSGFIVELGWEVLQLACEALSSWDAQGRKT--RLAVNVSALQLRQADFADRLLS 620

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     +P +++L  +E+ ++     +   L  LR  G+ ++LDDFG   +  ++L  +
Sbjct: 621 KLQHHGIAPQQLELEITETTILDPEGTAVTHLHTLRGAGLGISLDDFGRGYAGFAHLHSL 680

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + SL+     +     I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 681 PLSKLKIDRSLIAALSNSHDDSPIVSSTIILAKRLGLEVVAEGVETREQVVYLKLAGCDI 740

Query: 935 IQDSHVASPLGFNSI 949
            Q  H + PL    +
Sbjct: 741 AQGYHFSRPLSLPQL 755


>gi|262380218|ref|ZP_06073373.1| ggdef domain/eal domain-containing protein [Acinetobacter
           radioresistens SH164]
 gi|262298412|gb|EEY86326.1| ggdef domain/eal domain-containing protein [Acinetobacter
           radioresistens SH164]
          Length = 686

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/431 (27%), Positives = 205/431 (47%), Gaps = 8/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A QDNLT +PNR   LD     L +    +      + ID+D++K +ND  
Sbjct: 250 EINKELANLAVQDNLTRLPNRLFLLDY-AQYLFIEHKINKKSFAFLYIDLDRFKAVNDAF 308

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+ +  RI + L     L R+ G+ F +I+ +     +   +A  +   I  
Sbjct: 309 GHQVGDQLLIQVAARIHQNLGPEAKLLRVGGDEFLLIIEN-TGRKRAIYYAEKVLSLIQA 367

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +  +EI ++ SIG A +        ++L NA+ AM  +K +G N    F  S  + +
Sbjct: 368 SYLIAGKEINISCSIGIAIYPEHGTNLQDLLINADAAMLASKEQGRNTYAVFSYSVHQYE 427

Query: 704 RVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +  D+  AVE  +  L Y P       E+ G+EALI+W HP  G +S + F+  
Sbjct: 428 AQSQSKLINDMYKAVEERQFILFYQPKFSAKTYEVCGVEALIRWKHPTLGLLSPNMFIEG 487

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +  + LE   + I  W +Q  +    + +N+++      +L + ++ L+ K
Sbjct: 488 AEKTGLIIPMGYWALEEACKQIQYW-EQNGISLCPVAVNLSAIQFEHQKLFDTLENLLEK 546

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+ + +  +ES  M + E S     RLRK+GI L +DDFGT  S L YL  +P D 
Sbjct: 547 YRIQPNNLIIEITESTAMHHIELSIRSFERLRKMGIRLAIDDFGTGHSSLLYLKDLPVDE 606

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   + G         IL SII +A  +   + A+ +   +  + LTR+GC  +Q  
Sbjct: 607 LKIDRGFIVGLKPGNKEEIILESIIQLATKLGLIVTAEGVETPLQAEILTRLGCQQLQGY 666

Query: 939 HVASPLGFNSI 949
            + +P+    +
Sbjct: 667 LLGAPVEVERL 677


>gi|209550978|ref|YP_002282895.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536734|gb|ACI56669.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 736

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 210/439 (47%), Gaps = 11/439 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K           +D L+G+ NR      +   +  +         ++ +D+D +K++ND
Sbjct: 291 LKADENSAREETLRDRLSGLSNRDGLGLAVDRFVVEARQTKR-NVLLLYLDLDGFKEVND 349

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD ++  +   +  L+    +LAR+ G+ F I  +S+  +      A  +   +
Sbjct: 350 SYGHGTGDQLIRGVAAGLDVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLAEQILDFL 409

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +  R + V ASIG A   +  I   E+++ ++LAMY AK  G   +  +  S   
Sbjct: 410 VEPLEIGRRVVVVGASIGIAMSPAGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDA 469

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL +A+E+ +L L Y P+I        G+EAL++W+ P  G IS   F+ 
Sbjct: 470 DREQRNALELDLRMAIESGDLTLAYQPLIDAASYAPTGVEALVRWNRPGHGPISPEVFIP 529

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   +I+++ LF+L +       W +      + + +N++     +    + ++ ++ 
Sbjct: 530 IAETSGLIESLGLFVLRKACETAKQWPE------LNVSVNVSPGQFRNPAFADYVRYVLK 583

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T     RI L  +E  ++ NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD
Sbjct: 584 QTEVEAGRITLEITEGYMIQNPQRTRQSIERLKALGVKVALDDFGSGFSSIGYLRQFGFD 643

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G  E +    +L++ + +A++++  + A+ I  E     +   GCD +Q 
Sbjct: 644 RIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQG 703

Query: 938 SHVASPLGFNSILKLLKER 956
                P+  + I ++L  R
Sbjct: 704 YLFGKPMTADLITEMLHAR 722


>gi|332534947|ref|ZP_08410766.1| hypothetical protein PH505_bx00160 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035620|gb|EGI72111.1| hypothetical protein PH505_bx00160 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 493

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 116/485 (23%), Positives = 232/485 (47%), Gaps = 11/485 (2%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               R+     V++ D   H+       ++     + R I +A D   ++ + + +   A
Sbjct: 15  QTSDRISGVIVVQSYDKTLHYNEHDSALLT----YVSRQISMAID---RQLARQELEHKA 67

Query: 534 FQDNLTGIPNRQSFLDRLTTI-LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
             D LTG+ NR   ++R+    L L+    +    ++ +D D++K IND LG  VGD  L
Sbjct: 68  LHDELTGLANRSLLIERIKHAILRLTRAKKSTSHALLYLDFDRFKSINDSLGHEVGDHFL 127

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           + +   I   ++  D  ARL G+ F I + +  +  ++ +    ++ +++ P+N+    +
Sbjct: 128 IKICDLIKGTVRSTDTFARLGGDEFAIFMENITHKNQVNEALNRIKNALSKPLNIDNHLL 187

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
             + SIG A   +    +  +L+ A+ AMY AK  G   V+ F  +  +       I+ D
Sbjct: 188 QASTSIGIAYTDNVNDKAYILLQQADAAMYEAKSTGRGQVKFFNNTMRKKLKTHADIEND 247

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   +E++E  L + PI  +   E++G EAL++W HP  G +  ++F+ IAE    I  +
Sbjct: 248 LQHGIEHNEFELYFQPIFTINTSEVIGFEALVRWHHPTKGFVPPNDFIPIAETTGQIINL 307

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L +L+  A+ I +W  Q +   + + +N++S+     +    + ++ +K       + L
Sbjct: 308 DLHLLDLAAQHISNWHQQGHRF-LKVTVNVSSRHFASLDFVAQIHSIYNKYQLPLGSLCL 366

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES ++ N E +  ++  L  + + L LDDFGT  S L YL  +P   +K + S +  
Sbjct: 367 EITESGLIENLELATQIIEGLSPLKVKLCLDDFGTGYSALGYLHQLPIHILKIDKSFIDH 426

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +    ++ +I+ +A++++  ++A+ I     +  L    CDY Q    + P+     +
Sbjct: 427 LQDSTNPLVEAILSLAQSLKLEVVAEGIETVEQLTILQSTACDYGQGFLKSKPVTAKEAI 486

Query: 951 KLLKE 955
            L+ +
Sbjct: 487 LLINK 491


>gi|255101831|ref|ZP_05330808.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255307698|ref|ZP_05351869.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 759

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 114/444 (25%), Positives = 210/444 (47%), Gaps = 8/444 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KKS E +   AF+DN+TGI N   F       L    + +     ++  DIDK+K +ND
Sbjct: 316 HKKSKEKLEEFAFKDNVTGIGNSNKFNLEGGKFLS---SHEKKNLVLIYFDIDKFKLVND 372

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +   I  + K   + +R+S + F II   +NN   I +    +RK +
Sbjct: 373 RFGYEEGDRVLKEIAEIIKNIFKEQSVFSRISNDNFAIIFEKKNNRESIIEICELIRKKL 432

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +M    L  E+ +  SIG       +   S  L  A +A    K +     E +  +   
Sbjct: 433 SMIKTSLGVELNLIPSIGVYFVEEGETNISTCLDKAMIAKTTVKRKYLKVYEIYAENLKE 492

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   I++++  A++N +  +   P + L   +IVG EAL++W HPK G IS   F+ 
Sbjct: 493 TLIEERDIEQEMHDALKNEQFKVYLQPKVDLSTTKIVGAEALVRWQHPKKGLISPGVFIP 552

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+   I  +++F+  ++ ++   W ++   P   I IN++   L +      ++ +  
Sbjct: 553 IFEKNGFITELDMFVFTQVCKNFKRWENEN-FPTFPISINLSRVHLENPGFISELERITK 611

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ I++  +ES +  N +    ++  L+ +G  +++DDFG+  S L+ L  +P D
Sbjct: 612 EYEVEPNLIEIELTESAIFDNTKILFKIMQTLKSVGFKISMDDFGSGYSSLNMLKDMPID 671

Query: 880 TVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +       G+ +K   ++ SI+ MAK ++  ++++ +      + L  +GCD  Q 
Sbjct: 672 VLKLDRQFFITVGNAKKSQIVVSSIVQMAKQLDIKVVSEGVETVEQAEFLRFIGCDMAQG 731

Query: 938 SHVASPLGFNSILKLLKERFPLVK 961
              A P+      KL+ +R+ L +
Sbjct: 732 FLFARPMPIEEYEKLILDRYSLNR 755


>gi|83594095|ref|YP_427847.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577009|gb|ABC23560.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 820

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/649 (19%), Positives = 246/649 (37%), Gaps = 36/649 (5%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
                I   + V++      Y   +   R  +L  A  L       +          D+ 
Sbjct: 172 TLSIIIWGLTGVIFLIVLAAYGVFELSIRRPVLRVAEALRAEGRGAVGET-------DVP 224

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
            P  +   +L+    G  +  H                R    +  + D +   D     
Sbjct: 225 MPRTIETWLLVDAFNGMRLQVHSRQL------------RLQSVLESTSDGIITVDDKGSI 272

Query: 428 VTTTPDIATILGLASGSMHGPIRNWL---PYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            +       +LGL      G     L     +  +  +     L   +   RGR + +  
Sbjct: 273 ESINGAAERVLGLTRDEAVGRPLGDLIPLDRLAEDGGE--EGALSRRLLALRGR-EIDLP 329

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            R AD     + +++       G+   +  +  D+T++K  ++ +   A +D LTG+ NR
Sbjct: 330 ARRADGAAFHLSLKLSDFML--GERRYFNALIADVTDRKAMIDRLTFLAQRDPLTGLINR 387

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +SF D L   +  +         V+ ID+D++K +ND LG   GD +L  +   +   L+
Sbjct: 388 RSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGHQAGDCLLKEVAEVLFGRLR 447

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D+LARL G+ F ++L   N    +               +   + + +  S+G A+W 
Sbjct: 448 ETDLLARLGGDEFAVLLHGVNREGALHVAEALRLCLADYAFSYDGKSVEIGCSLGVATWA 507

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-----LCLAVENSE 719
           +      ++L  A++AM  AK  G N V  F          ++ +      +   + N+ 
Sbjct: 508 ADVDDPEDLLARADMAMRLAKRAGRNRVHLFEEGDLEVRARVVADAGYSKLIDRGLRNNL 567

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
              V+ PII +    +VG E L +   P    ++    + +AE   +   I+  ++  + 
Sbjct: 568 FRPVFQPIIDVTSGAVVGHETLARLHDPAAIGLTMDVLIPVAERFGLAVEIDRQIILAVT 627

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             +    D   +   F+  N++++ + D  +   ++ LI+     P  +    +E+  + 
Sbjct: 628 EALAE--DAGWLEGGFLSFNLSAQSVGDGRIFSAVRRLIATRRLPPQALIFEITETAAIA 685

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +   +R  L  L  +G    LDDFG+  S  +YL  +P D +K +G  +        + A
Sbjct: 686 SLAAARTFLKALTDLGCKTALDDFGSGYSSFTYLRELPVDFLKIDGRYVRDIHHDPVKAA 745

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           ++++I  +A  +    IA+ +     ++ L + G D  Q      P   
Sbjct: 746 MVQAINTVAHAMGMRTIAECVEEASGLEVLRQSGVDCAQGFLFGRPAPL 794


>gi|255320928|ref|ZP_05362102.1| ggdef domain/eal domain protein [Acinetobacter radioresistens SK82]
 gi|255302097|gb|EET81340.1| ggdef domain/eal domain protein [Acinetobacter radioresistens SK82]
          Length = 689

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 120/431 (27%), Positives = 205/431 (47%), Gaps = 8/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A QDNLT +PNR   LD     L +    +      + ID+D++K +ND  
Sbjct: 253 EINKELANLAVQDNLTRLPNRLFLLDY-AQYLFIEHKINKKSFAFLYIDLDRFKAVNDAF 311

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+ +  RI + L     L R+ G+ F +I+ +     +   +A  +   I  
Sbjct: 312 GHQVGDQLLIQVAARIHQNLGPEAKLLRVGGDEFLLIIEN-TGRKRAIYYAEKVLSLIQA 370

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +  +EI ++ SIG A +        ++L NA+ AM  +K +G N    F  S  + +
Sbjct: 371 SYLIAGKEINISCSIGIAIYPEHGTNLQDLLINADAAMLASKEQGRNTYAVFSYSVHQYE 430

Query: 704 RVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +  D+  AVE  +  L Y P       E+ G+EALI+W HP  G +S + F+  
Sbjct: 431 AQSQSKLINDMYKAVEERQFILFYQPKFSAKTYEVCGVEALIRWKHPTLGLLSPNMFIEG 490

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +  + LE   + I  W +Q  +    + +N+++      +L + ++ L+ K
Sbjct: 491 AEKTGLIIPMGYWALEEACKQIQYW-EQNGISLCPVAVNLSAIQFEHQKLFDTLENLLEK 549

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+ + +  +ES  M + E S     RLRK+GI L +DDFGT  S L YL  +P D 
Sbjct: 550 YRIQPNNLIIEITESTAMHHIELSIRSFERLRKMGIRLAIDDFGTGHSSLLYLKDLPVDE 609

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   + G         IL SII +A  +   + A+ +   +  + LTR+GC  +Q  
Sbjct: 610 LKIDRGFIVGLKPGNKEEIILESIIQLATKLGLIVTAEGVETPLQAEILTRLGCQQLQGY 669

Query: 939 HVASPLGFNSI 949
            + +P+    +
Sbjct: 670 LLGAPVEVERL 680


>gi|289644638|ref|ZP_06476704.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
 gi|289505566|gb|EFD26599.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
          Length = 572

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +       AF D LT + NR+    R  T   ++AT    R  ++++D+D+++ +ND L
Sbjct: 103 NTYAEAHDQAFHDALTNLGNRRMLQRR--TAEAIAATATGSRSALLLVDLDRFRDVNDTL 160

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   ++  D++ R+ G+ F I+L    ++      A  + + +A 
Sbjct: 161 GHDAGDQLLRGIAERLRRGVRAGDLVTRIGGDEFAILLTGIRDADAAETIAATLTRVLAR 220

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRS 702
           P+ +    ++V ASIG A       T  E+L+ A++AMY AK   GG         S   
Sbjct: 221 PVGVEGMMLSVEASIGIACLPEDGDTVDELLRRADVAMYQAKRTHGGYRRYRADEDSSTL 280

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + +  DL  A+++ ++ L Y P I L    IV  EAL++W+HP  G +S   F+   E
Sbjct: 281 AHMALMADLHDALDHGDINLCYQPQIDLETGRIVAFEALVRWNHPVPGRLSPDAFIGAVE 340

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I      +L         W          I +N+ +++LL+  L   +  L+    
Sbjct: 341 QSGRIGDFTRTVLREALSAAGQWHADGARVG--ISVNLFARNLLEPGLATEIAQLLLANR 398

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S + + L  +E  V+     +   L  LR +G+ L +DDFGT    L+ LG      VK
Sbjct: 399 LSAAALTLEITERAVVTESAATVRSLAALRDLGVRLAVDDFGTGYGALNVLGQFDLHEVK 458

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +      R   AI+R+ + +A ++   ++A+ +     +  L+ +GCD  Q + +
Sbjct: 459 IDQSFVHNVAGDRANSAIVRATVALAHDLGLRVVAEGVEDAETLNALSTLGCDLAQGTLI 518

Query: 941 ASPLGFNSILKLLKE 955
           + P        LL++
Sbjct: 519 SPPCPAEEATALLRD 533


>gi|254504186|ref|ZP_05116337.1| hypothetical protein SADFL11_4225 [Labrenzia alexandrii DFL-11]
 gi|222440257|gb|EEE46936.1| hypothetical protein SADFL11_4225 [Labrenzia alexandrii DFL-11]
          Length = 892

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 129/573 (22%), Positives = 236/573 (41%), Gaps = 22/573 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            +   L        + S+     + +      V  +D                GL    +
Sbjct: 320 EMADSLFEREKEARLRSEE--LEVTLASVVQGVSAFDKDGRLHFCNDRAGEFTGLPPEML 377

Query: 446 HG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPM 502
                   +  Y        F       V        +   +   ++ +   +     PM
Sbjct: 378 VPGTSYHAYNQYRQGAFVTGFPGEATKAVSESVQPTSHIRSLIHLSNGRI--LSFSAAPM 435

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +       ++    D+TE+  + E +   A  DNLT + NR SF + L  ++D++   D
Sbjct: 436 PDG-----GWVETYEDVTEKVVADERVKKAAETDNLTELANRLSFRETLDHVVDIAGDAD 490

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +  ++++ID++ +K +ND  G  VGD +L  +   +  + +  D+ ARL G+ F ++L 
Sbjct: 491 EVASSLLLIDLNDFKAVNDSHGHVVGDRLLQHVANTLKAVSEGGDLAARLGGDEFALVLK 550

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  I + A  +     +P+NL    +    S+G A  ++    S E L  A+LA+Y
Sbjct: 551 PRT-EEDIREIANGLCAVFDLPVNLDGLMVQSGLSVGVAIISADGTGSEETLSRADLALY 609

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK    +    F        ++R   K  L   VEN  L +   PI+ L    +   EA
Sbjct: 610 KAKQEKRSAYRVFDADIAKEDAERKRTKNALIRVVENQGLDVFCQPILNLETHRVDHFEA 669

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W   +   +  S F+ +AEE+ +I  +  F+L  + R + +W +          +N+
Sbjct: 670 LVRWHQGEESYVPPSNFIPLAEEIGLIAKVGDFVLSEVLRSLATWPN-----DYRACVNV 724

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L D    E +   + +   SP R++L  +ESV+M     +   L +LR  G++L L
Sbjct: 725 SVLQLGDGRFVERVLNGLKEAGISPHRLELELTESVLMSAGSAAHEDLRKLRDAGLNLAL 784

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG   S   YL  +PF+ +K +   ++     E   AILR+I  +A N++    A+ +
Sbjct: 785 DDFGIGFSSFGYLQELPFNKLKIDRRFVSEVEKDEGSAAILRTIAALADNLDMKSTAEGV 844

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                +  +T  GC Y Q   +  P+    + +
Sbjct: 845 ETAQQLSVVTACGCHYGQGYFIGQPIPLEDVQQ 877



 Score =  105 bits (261), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 112/338 (33%), Gaps = 37/338 (10%)

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV---NLPSGELLIWRA 255
              LA +    +   R  +             ++   FG LS LV    +  G+   +  
Sbjct: 14  LGALAFY----FFARRDILHARRSV----SAAFLGALFGLLSVLVVMMPVHFGDGATFDT 65

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
            +  A+ S   +                   F GI    I     ++     A    ++ 
Sbjct: 66  RAAPAILSGYFL-----------------GPFGGIITATIAGAARYWVGGPFAIGGSLSP 108

Query: 316 ASIVLYYTYFIIYHGMK--GYERAVLLIPAWILIFIWF----IGLWMAITKRLDNDIIQP 369
                Y          +  G     LL  A +          I   + +  ++  +    
Sbjct: 109 FFYAAYGAIVGACCRHRDLGPGPLRLLSIAVVGTLFVLPCFFIDQGVEVGLQILENAWYL 168

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            LVG +V +VI     +I          + + S      LA   +G  VW +D+  +R+T
Sbjct: 169 LLVGNVVGVVI--LGLMISEAKKFSVEHKALKSTLFLTDLARSSAGIAVWRFDMAANRLT 226

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
               +  +  +  GS +G   +W   +H +D D  R         + G    +FR+   D
Sbjct: 227 WDDAMFRLFDVDPGSFNGEFNDWERTVHPDDIDAARRQFLEAYEKKSG-FATDFRIVRRD 285

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              HW+      + + +G++   +G+  DIT+ K+  +
Sbjct: 286 GSIHWLAAHCSFLEDDDGNVTEAVGVNWDITDSKEMAD 323


>gi|310659136|ref|YP_003936857.1| diguanylate cyclase/phosphodiesterase [Clostridium sticklandii DSM
           519]
 gi|308825914|emb|CBH21952.1| Diguanylate cyclase/phosphodiesterase precursor (fragment)
           [Clostridium sticklandii]
          Length = 591

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 125/443 (28%), Positives = 219/443 (49%), Gaps = 23/443 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K    I   A+ D LT +PNR+SF++RL++ L+           ++ +DID +K IN
Sbjct: 157 ELEKLKSHIEHMAYNDELTNLPNRRSFMERLSSELESKKE-----GAIIFLDIDNFKAIN 211

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L  +  R+  LL     ++R  G+ F I++ S+ +   + + A ++   
Sbjct: 212 DTLGHVHGDELLNRVAYRLKLLLGANAFISRFGGDEFLILI-SDTDKESVENLAKSINDI 270

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  L   +I V  S+G   +       +E++ NA+ AMY  K  G NH + F     
Sbjct: 271 FDEPFLLNNNKINVDFSMGITFYPKDSSDINELIMNADTAMYQVKATGRNHYKFFDCEMI 330

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               ++V I+  +  A++N    L Y P I++    I G EAL+++ +     +S + F+
Sbjct: 331 ESIKEKVKIETKIREALKNDGFVLHYQPQIKVDSLSIYGFEALLRFKNDT---LSPAVFI 387

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  +  ++       +  W+++       I IN+++K ++D    E ++A +
Sbjct: 388 PIAEESGLIIEVGRWVTNEAILQLYDWKERHINLK-PISINLSTKQIMDTGYIEFLRAGL 446

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K    P  I++  +ES+++   ER+   L  L+++G+ + LDDFGT  S LSYL +IP 
Sbjct: 447 EKYEIPPEFIEIEITESILLEKTERTIEFLNELKQVGVKIALDDFGTGYSSLSYLTFIPV 506

Query: 879 DTVKFNGSL------MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           D +K + SL      +T        ++ S+I +A ++E  +IA+ I      + L    C
Sbjct: 507 DKIKLDKSLSDKFLELTNI-----KVMDSLISLAHSLELEVIAEGIEDLEQYRRLRVGKC 561

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           DYIQ      P+  N   K+   
Sbjct: 562 DYIQGYLFGKPIEINEADKIYDS 584


>gi|291454315|ref|ZP_06593705.1| integral membrane phosphodiesterase [Streptomyces albus J1074]
 gi|291357264|gb|EFE84166.1| integral membrane phosphodiesterase [Streptomyces albus J1074]
          Length = 957

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/816 (17%), Positives = 306/816 (37%), Gaps = 46/816 (5%)

Query: 154 NPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN 213
           NP     F +  + P +  + +                   +IG + L   +        
Sbjct: 64  NPSIADLFFLCFAPPAVVGLLVLAKRPVTRAGWVCLALDSWLIGGSLLTLAWSLALAHT- 122

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL 273
            + +   + + A + L Y  +D   +S ++ L        R+    A+ +  +  L   L
Sbjct: 123 -ADIEGGSVSYAALNLAYPLLDIALVSMILALHFRRSSAGRSALNTAIGALALTVLCDAL 181

Query: 274 HWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVT---------ASIARITLASIVLY 321
             +       + G I  +G    ++L   + +                       +++  
Sbjct: 182 FTSPLLHNSYRSGQILDAGWFAGSLLLAYAPWVGRHRESERGAVEEPPAQDARPGAVLPA 241

Query: 322 YTYFIIYHGMKGYERAVL--LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
               I  H         L  L P           L+  +  R  + ++   +    V++ 
Sbjct: 242 GHPAIAAHDRTSPISGSLAALTPYLAAAVCTLGILYNVVNGRSVDRVVL--VTACTVVLA 299

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +++   ++  ++     ++ +          V GS D++   D        +P  + + G
Sbjct: 300 LVVRQGIM--LIDNITLTRELAHQENHFRSLVQGSSDVIMIADPSGTLRYVSPAASGVYG 357

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR---RGRLQYEFRVRAADNQFHWMI 496
             +  +     +   +IH  D       +  F+          + E R ++    +  + 
Sbjct: 358 RDASELEDTELS--AHIHPGDLGRVVHEVRRFLAADPALEPTTRIECRFQSGRGTWLNVE 415

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +             I  + D+TE+ +    +  +A  D LT +PNR  F  R++  L 
Sbjct: 416 STVNRHQG------GLIFNSRDVTERVRLQAQLQHSAEHDPLTDLPNRALFTRRVSQALS 469

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +    V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ 
Sbjct: 470 -GRRSSDRGAAVLFIDLDGFKAVNDTIGHQAGDELLVHAARRLDEAVRAGDTAARLGGDE 528

Query: 617 FGIILISENNSLKIAD------FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           F  +++ +    + A        A  +RK ++ P  +   ++ V ASIG A +      +
Sbjct: 529 FAALILGDTGEDRAAREGHIQELADRLRKRLSEPYAIDGNDVRVAASIGVA-FAEPGQNA 587

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPII 728
            E+L+NA+LAMY AK  G + V  +             +   L  A+   E  L++ P++
Sbjct: 588 GELLRNADLAMYRAKAAGKDRVVLYAPQMQADVVRKAELASRLRSALNAGEFALLHQPVV 647

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L   ++  + A  +W   +    + +EF+ +A+       +  + LE+           
Sbjct: 648 DLTTGKVAAVAAQARWRSGQGILFTPAEFLRVADNGDRAAELGRWTLEQAIAQAAERHRS 707

Query: 789 ANMPPIFILINIASKDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            +  P+   + + ++ LLD       ++AL+++       + L  ++S      +     
Sbjct: 708 GHAAPVV--VRLGARRLLDRAAPPYAVEALLTRYGLPSGGLVLELADSDSSVPQDALEQR 765

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L  LR++G+ + LD FG   +    L  +P D +K + SL+ G   + ++  I   ++ +
Sbjct: 766 LTVLRRLGVRIALDGFGGGHAAADALRRLPVDILKLDRSLVEGVVESARQHKITAGVLRI 825

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           A ++    +A+ +     +  L  MGC + Q    A
Sbjct: 826 AADLGLQTVAEGVDRPEQVVALRTMGCTHAQGMAFA 861


>gi|289207702|ref|YP_003459768.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
 gi|288943333|gb|ADC71032.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thioalkalivibrio sp. K90mix]
          Length = 1072

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 111/570 (19%), Positives = 228/570 (40%), Gaps = 30/570 (5%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPI- 449
                  +    +  R +  +      +   D         P    +  +A    + G   
Sbjct: 509  EQARLLELTRREQGRMASLLSAMSIGILFEDRQGSIEYVNPAFRRMWAIADEVDLVGQPS 568

Query: 450  RNWLPY-IH----INDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            R  L +  H     +        +LD+       R + +      D +   +     P+ 
Sbjct: 569  RAVLEHSTHRFARPDHASRHVLHVLDTH--EISERFEVDL----YDGRI--LTQLSYPVH 620

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            +++   +  + +  D+T ++++ + ++  A  D LTG+ NR  F  +L   +  +     
Sbjct: 621  DADERSIGRLWLYEDVTHERQTAQQLVYLAEHDPLTGLYNRHRFQRQLEQAIHTARRR-G 679

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                ++  D+D++K IND  G   GD VLV     I  L++  +I ARL G+ F I++  
Sbjct: 680  THLALIYFDLDEFKTINDTFGHRAGDTVLVRAAGEIASLVREEEIFARLGGDEFAILVDH 739

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                          R   A+P     +   +TASIG A +        +++ +A+ AMY 
Sbjct: 740  AAEREPEGLAERVARAISAIPFRFRGQNYRLTASIGIARYPEHGDNVEDLVAHADAAMYQ 799

Query: 684  AKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            AK  G N    F  S        +R+   + +  A+E  +  L +  I  L    +  +E
Sbjct: 800  AKDSGKNTWAVFDASRNTAERMLERMSWSQRIGKALEGGQFELHFQGIYHLDSGALNHME 859

Query: 740  ALIQWDHP--KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            AL++   P      +   +F+ +AE+   I  I+ +++      +    +        I 
Sbjct: 860  ALVRMRDPLAPGEVVMPGQFIPVAEKTGQIVDIDRWVIRESIAHLARQPELPG-----IA 914

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            INI+ +   +  L + +   +S+    P R+ +  +E+  +   + ++  +  L++ G  
Sbjct: 915  INISGRSFDEPGLPQYITNELSQQGVDPRRLVIELTETAAVSEMQDAQRFIEALQQAGCL 974

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S  +YL Y+    +K +G  +          A +R+++ +A+ ++   +A
Sbjct: 975  VCLDDFGSGFSTFAYLKYLGVQVLKIDGMFVRDLPNNRDNQAFIRAMVDVARGLDKWTVA 1034

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            + +     +  L  +G D +Q  H+  P  
Sbjct: 1035 ECVEDGDTLAMLADLGVDMVQGYHLNRPSP 1064



 Score = 75.4 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 106/352 (30%), Gaps = 25/352 (7%)

Query: 194 IIIGVASLLAIFLTIFYMVN--RSSMLIPTFAMAWVVLGYISID-FGFLSKLVNLPSGEL 250
           ++  +  L    L I  ++   R   +     + W+V   +    +GFL+ +       +
Sbjct: 10  LLYALNGLAFFTLGIVALMLPRRERFVPFAAHVGWLVPFGLLHGTYGFLNAIGLHHELGV 69

Query: 251 LIWRACSEIALSSSLIIFL----FMYLHWNR-WHAKVGYITFSGIACIAILFCMSFYYPM 305
           L  R      L+ S +  L       L      H     +  S    ++ +  ++     
Sbjct: 70  LSDRWSMTAWLAVSYLPLLEFGRRALLDIRPGLHLPAWGVYGSLAIGLSAILLVAVEPAT 129

Query: 306 VTASIARITLASIVLYYTYFIIYH---------GMKGYERAVLLIPAWILIFIWFIGLWM 356
             A+ AR  +                        M+ +  A+ +     L +  F+    
Sbjct: 130 GLANGARYLIGFPGALLAGLAFLLHVRSPGAQPEMQRHIPALGIAALAFLAYAAFLPFPA 189

Query: 357 AITKRLDNDIIQPA--LVGGLVLIVILIGFTVIQHVLATGYFSQ--GIFSDGERQSLAVL 412
            +   L   +      L    V I  L     +   LA    ++  G     +     + 
Sbjct: 190 RVDLGLPPWLPTQGDFLAATGVPIQTLRTGAAMLFTLALISLARTIGAQHSDDLLR-VLE 248

Query: 413 GSGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
                V+    +   D +     +  + G  +   +     +  ++H +D D     +  
Sbjct: 249 TVNGFVYRCRNNPQWDVIFVDGGVRELTGYEARDFYRGDITFAAWVHPDDSDYTWEGVQE 308

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            +    G  Q ++R    D    W+  R   + +++G ++   G   D  E 
Sbjct: 309 GLKQD-GHYQIQYRAVNRDGSVRWVFERGTGVYDAHGHLIYLQGHVIDAHEL 359



 Score = 61.1 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 16/128 (12%)

Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD--- 462
               +  + D V+ +D+     +          G     +          +H  D     
Sbjct: 376 FRSTLDLTLDGVFLFDVDSLQFIYVNQGAMDQTGRTRNELLQ--------LHPYDIKPEF 427

Query: 463 ---NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               FR++L+      R +L +E   +  D     + I ++ ++   G+  RY+ I +DI
Sbjct: 428 PETRFRSMLEPLRRGERDQLLFETTHQHVDGHLIPVHISLQLVA-PRGERPRYVAIVHDI 486

Query: 520 TEQKKSLE 527
           +++K++ E
Sbjct: 487 SQRKRNEE 494


>gi|330990612|ref|ZP_08314569.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
 gi|329762314|gb|EGG78801.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
          Length = 867

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/485 (26%), Positives = 242/485 (49%), Gaps = 22/485 (4%)

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G L + FR + A  ++H      R ++++    L    +A    EQ++S E I      
Sbjct: 386 GGSLAFYFRAKRAPGRWH------RRIADA---CLHLCALAI---EQQRSREDIARLTQY 433

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR      +      +A   +     ++I++D+++ IN+ LG   G+ +L +L
Sbjct: 434 DTLTGLPNRTGLRHGIRQ---RAARARHENLLALIINLDRFRAINNGLGRPAGNMLLAAL 490

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            RR+  L+   D+LAR  G+ F +I        +    A A+ K++A P+ + E  +T+T
Sbjct: 491 ARRLSGLISSDDLLARSGGDEFTLITTG--GVERATALADAVMKAVAEPVVIDEVPVTIT 548

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCL 713
           ASIG A     +  +  +++ AE A+  AK+   N    F   ++   +D++++   L  
Sbjct: 549 ASIGIADNDGGRRETEILMQQAETALSQAKNADRNCYRFFSEEMNRQAADQILLANALKE 608

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   +LYLVY P +      + G+EAL +W  P  G IS   F+ +AEE   I+AI L+
Sbjct: 609 AIRTDQLYLVYQPQVHAATGRLEGVEALARWTDPALGMISPGRFIPLAEETGQIEAIGLW 668

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            L+   R +  W       P+ + +NI++    + +L   +  ++ ++   P R+ +  +
Sbjct: 669 SLQAACRQMALWMQAGVDVPV-VSVNISALHFRNPDLPRLIGEILHESGIPPRRLTIELT 727

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES ++ N +++ +    +R + I L++DDFGT  S LS L  +P + +K + S M G   
Sbjct: 728 ESAMIENYDQTLIAAQAIRAMSIGLSMDDFGTGFSSLSNLANLPLNELKIDRSFMDGFEP 787

Query: 894 KRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                +++ +II + +++  T++A+ +  +  +  L ++ CD IQ    + PL    +  
Sbjct: 788 TGKVHSVVTAIIRIGRSLGMTVVAEGVETQAQLDLLRQINCDVIQGYFFSRPLDVQDLEA 847

Query: 952 LLKER 956
            LK R
Sbjct: 848 WLKAR 852



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 6/170 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE--RQSLAVLGSGDIVWDWDIVRDR 427
                 + +  + G      V++    ++ +    +  + +  V  +   +   D     
Sbjct: 106 TPFSAEMSVARVEGAGQQVFVISLRDVTRDLSRREQDLQYASIVQRNACGILILDSQCRI 165

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                  A   G+ +  M G   +        D    +         R    + E   R 
Sbjct: 166 TYANASAARFSGIGAEGMEGADFSAFLSGQQGDLATLQAFRRRL--QRCRPFELEIHSRT 223

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--EQKKSLEGILCNAFQ 535
              Q  W++  + P+ +   ++   I + NDIT  EQ K+L+  +  A  
Sbjct: 224 DTGQDIWLLATVTPLCSPYEELHEVIVVLNDITGSEQIKALQKDMMGALT 273


>gi|297156967|gb|ADI06679.1| putative integral membrane phosphodiesterase [Streptomyces
           bingchenggensis BCW-1]
          Length = 994

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 149/772 (19%), Positives = 294/772 (38%), Gaps = 58/772 (7%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAKVG 283
             L Y  +D   +S +V +        R+    A+++  +  L   L  +   R H + G
Sbjct: 184 FSLAYPLLDIVLISMVVAVHFRRSSANRSAINTAIAAFALTVLCDALFTSPLLREHYRSG 243

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            I  +G    +IL   + +     A+ A    A                       L P 
Sbjct: 244 QILDAGWFAGSILLAYAPWVARREAAQAPPAAALRRPA------QPSRGSAGSLAALAPY 297

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                     L+  +  R  + ++        V++ +++   ++  +L     +Q +   
Sbjct: 298 LAAAVCTLGILFNVMDGRPIDGVML--FTACAVVLALVVRQAIM--LLDNITLTQELAEK 353

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
                  V  S D++            +P  + + G  +  + G        IH  D   
Sbjct: 354 ENHFRSLVQSSSDVIMIAAPTGILRYVSPAASGVYGREADELVGS--ELASLIHPEDLGP 411

Query: 464 FRTILDSFVG---YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               +  F+          + E R R+    +  +   I             I  + D+T
Sbjct: 412 VVHEVRRFLAASPGEEPTTRIECRFRSGSGDWLNVESTINRHHG------GLIFNSRDVT 465

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +    +  +A  D LT +PNR  F  ++   L       +    V+ ID+D +K +N
Sbjct: 466 ERVRLQAQLQHSAEHDPLTDLPNRSLFTKQVRHALA-GRRRTDAGTAVLFIDLDGFKAVN 524

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFP--DILARLSGNRFGIILISENNSL------KIAD 632
           D +G   GD++LV   RR+ E ++    D  ARL G+ F  +++ + +        +I +
Sbjct: 525 DTVGHQAGDELLVQAARRLQESVRSGSGDCAARLGGDEFAALILGDGDRDPAARECRILE 584

Query: 633 FAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            A  +R  ++ P  +    E+ V ASIG A +    I   E+++NA+LAMY AK  G N 
Sbjct: 585 IADRLRARLSQPYQVVGGTEVRVAASIGVA-FAEPGIGPGELMRNADLAMYRAKSAGKNR 643

Query: 692 VESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           VE +            +    L  A+ + E  L++ P++ L    I  + A  +W   + 
Sbjct: 644 VELYAPQMQADVTRRAEFATRLRTALHDGEFVLLHQPVVELGGGRITAVAAQPRWRSAQG 703

Query: 750 GNISSSEFMLIAEE---------------LCMIKAINLFMLERIARDIISWRDQANMPPI 794
              + +EF+ +A+                      +  + LE         R      P+
Sbjct: 704 ILFTPAEFLRVADSGRDSARDGGRGGGEDAARTAELARWTLEAAVEQAAERRRDGF--PV 761

Query: 795 FILINIASKDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            + + + S  L+D  +    ++ L+++       + L  ++S    + +     L  LR+
Sbjct: 762 PVCVRLPSSRLVDKSMPPKSVETLLARHGLPSGALILELTDSDPRVSLDELEHRLSALRR 821

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIET 911
           +G+ + LD FG+  + +  L  +P D +K +  L+ G  E      I   ++ +A ++  
Sbjct: 822 LGVRIALDGFGSGYAAIRALRRLPIDMLKLDRGLVEGVVESSRLHKITSGMLRIAGDLGM 881

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKN 962
             +A+ +     I  L  MGC + Q +  + PL  + + + L    +P+ ++
Sbjct: 882 QSLAEGVDLPEQIVALRAMGCTHAQGTAFSGPLDEHRLRRALNRGSYPVSRS 933


>gi|190895007|ref|YP_001985300.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700668|gb|ACE94750.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 587

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 128/584 (21%), Positives = 256/584 (43%), Gaps = 31/584 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           + I         +  + +   +  LA+  SG  +W  +I R++      +  I G+    
Sbjct: 9   SEIALSNKRSRTNVELENLLRQLGLALEASGIGIWQHNIARNQTRWDEQLKLIYGVPKAP 68

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +      WL  IH +D      I    +  +      EFR+   D    ++  R R   +
Sbjct: 69  LD---VIWLDSIHPDDLVATNEIFLRAIETKSD-YASEFRIIRPDGATRYLRSRARYFVD 124

Query: 505 SNGDILRYIGIANDIT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           + GD   ++G   D+T       E ++S       A  D+LTG+ NR+SF       L  
Sbjct: 125 AAGDPC-FVGAEWDVTDDVLLNKELERSRTEARFAADHDHLTGLLNRRSF----DFALSE 179

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A  ++++  ++ ID+D +K+IND  G AVGD VL  +++ + E +   D+ ARL G+ F
Sbjct: 180 LARQESVKVALLHIDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEF 239

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +++  E+   +       +++ +  P+ + ++ + V  SIG AS        + +L  +
Sbjct: 240 AVVIT-EDECDRTIAVLDHIQRRLESPLPVGDQTLIVRCSIGVASAM--SADFARLLSQS 296

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +LA+YHAK  G N  E F      +  +   + +DL   +   ++   Y   +      +
Sbjct: 297 DLALYHAKRNGRNRAEIFSDEMASTLANERQLAQDLRSGLALGQIRPFYQVQVDARSFRV 356

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W HP  G ++ + F+ IA    ++  ++  +L+ +  D+      A +  I 
Sbjct: 357 NGVEALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVLSDMK---SSALLEGIR 413

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKI 854
           + +N+++  L D EL       +        R+     E++ + +  ++ R  +  ++  
Sbjct: 414 VSVNLSADRLDDPELAAK----LDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSF 469

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
           GI + +DD G+  + L  L  +  D VK +  L+T   +      ++ S++ +A+ ++  
Sbjct: 470 GIDIEIDDLGSGHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDME 529

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +IA+ +        L  +G   +Q      P  F  +   L++ 
Sbjct: 530 VIAEGVETLEHANVLAALGVHTLQGYAFGRPHSFADLSARLEQE 573


>gi|239994606|ref|ZP_04715130.1| PAS sensor diguanylate cyclase and phophodiesterase [Alteromonas
           macleodii ATCC 27126]
          Length = 992

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 117/630 (18%), Positives = 233/630 (36%), Gaps = 45/630 (7%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWD 420
           + +D I P  +   V+         ++ V         +    E+    V G     V+ 
Sbjct: 362 IHSDKIVPQWIKVQVVKAGDNIAVTVRDVTERFRAQHDLKRSEEKYRRLVDGMHRHFVYT 421

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
             I  + +  +  I  ILG ++         ++  +  ++       +   +        
Sbjct: 422 KTIEHNFMYVSAGIEKILGFSAEDFCANESKYVRQV-PDE----TFEIRQTIARGEKPEP 476

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           Y    +    +   +     P+ +  G ++   GIA D+T++    E +   A  D LTG
Sbjct: 477 YIVHYQGKVGEPLAIEFSDTPIVDEQGLLVAVEGIARDVTKELALQEEVYFQANHDQLTG 536

Query: 541 IPNRQSFLDRLTTILDL--------------------------SATDDNLRPTVMVIDID 574
           + NR +F ++L  ILD                           S    + +  +  ID+D
Sbjct: 537 LFNRYAFDEKLRAILDETHKAAGQQGESKALNHIDFEKVASINSPRAYHKQSVMCFIDMD 596

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND  G   GD +L  ++    + +   D+LAR+ G+ F II  +++         
Sbjct: 597 RFKLVNDSCGHPAGDKLLKEISTIFRQYVNGQDLLARIGGDEFCIIFRNQSLDEVTKRLD 656

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +           ++   V ASIG      S  ++  ++K A+ A Y AKH G N    
Sbjct: 657 KLLLAISNYRFVYDDKLFFVGASIGVIEINESTQSAEALIKAADNACYKAKHLGRNRYFV 716

Query: 695 FRVSSFRS----DRVMIKEDLCLAVENSELYLVYHPIIR------LMDEEIVGLEALIQW 744
           F  +  +         +   L  A++N    L    I+           ++   E L++ 
Sbjct: 717 FHDNDSQMAIDDSENQVLHALHHALQNDGFELYSQAIMPLNVPNQEKAAQLQHYEILLRL 776

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                G IS   F+ +AE   ++  ++++++E   + +       +     + IN++   
Sbjct: 777 HAKDSGLISPGLFIPLAERHGLMNKVDMWVVENTLKTLERNPAHIDTVG-KVAINLSGIT 835

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D      +   +  T     +I    +E+  + N   ++  +  LR +G S  LDDFG
Sbjct: 836 LGDEMALHKIAKRMQSTSVPAEKICFEITETTAVTNLSAAKHFISTLRDLGCSFALDDFG 895

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S  +YL  +  D VK +GS +          A + +I  +A ++    +A+ +    
Sbjct: 896 AGMSSFTYLKNLDVDYVKIDGSFVRNIVHDPIDHATVTAINNIAHSMGKQTVAEFVVDNA 955

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             + L  +  D+ Q   +  P      ++ 
Sbjct: 956 TAEVLRELKVDFGQGFALDKPKPLAHRVQW 985


>gi|224824006|ref|ZP_03697114.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Lutiella nitroferrum 2002]
 gi|224603425|gb|EEG09600.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Lutiella nitroferrum 2002]
          Length = 1125

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 224/454 (49%), Gaps = 7/454 (1%)

Query: 513  IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            I    +  EQK++   +      D LTG+PN   F + L+  L  S  +     T+  ++
Sbjct: 672  IATLRNHVEQKRTQAAMHHLMRHDPLTGLPNALQFEEALSAALRTSMQEAQPLATL-QLN 730

Query: 573  IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            I++  +IND LG   GD +L     R+   +    ++AR+ G+ F ++L   +++     
Sbjct: 731  IERLSEINDALGFVYGDQILCDFGFRLQGCVPATALVARIRGDEFAVLLPG-SDAQAALT 789

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNH 691
               A+   +A    + +  + V+A  G A +     T+ ++L+  + A+  AK RG  + 
Sbjct: 790  AVEAVELELARAFPVADIALDVSAKTGIALFPEHGTTTHDLLRRMDKAVNQAKKRGLSHV 849

Query: 692  VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            V     +  ++DR+++  +L  A+E  EL +   P +      + G EAL++W+H + G 
Sbjct: 850  VFDPGEAHAQADRLVMMGELRRAIEGGELRVYLQPKVEFATGRVSGAEALVRWNHSRLGL 909

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            ++ + F+ +AE   +I+ +  +++      + SW  +    P  I +N++++ L D  L 
Sbjct: 910  LAPAMFIGLAEHTGLIRPLTEWVIGATLDLLQSWHARGCAVP--IAVNLSARSLHDESLL 967

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            + ++   +     P  +++  +ES VM +PE +  +L  L   GI L +DDFGT  S L+
Sbjct: 968  DKIRLWQAARGIGPGWLEVEITESSVMEDPELALGILHSLHAGGIPLYIDDFGTGYSSLN 1027

Query: 872  YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P D +K + S +     ++    I+RS I + +++    +A+ I  +   ++L+R
Sbjct: 1028 YLQKLPVDYIKIDQSFVANMSRSKDSAMIVRSTIDLVRDLGRKTVAEGIETQEHWEQLSR 1087

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +GCDY Q   +A P+   +  + ++   P V  T
Sbjct: 1088 LGCDYAQGYFIAKPMPAEAFQEWVENFIPPVPAT 1121



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 57/172 (33%), Gaps = 4/172 (2%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVL--ATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            ++  + + G +L+ +L    V+      AT    + +    E     +   GD V   D
Sbjct: 185 TLVVASSLVGALLVFLLASTYVLIRRQWHATATSQRALADSEESLRTTLDSIGDAVLATD 244

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQ 480
           I             + G  +    G    +    I+   R+     + + +   +   L 
Sbjct: 245 IDGRISRMNLVAEQLTGWPASLAVGRPVEDVFRIINEETREPAADPVAAVLATGKTQALA 304

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               + A D     +     P+ N+ G +   + +  D++ ++ + + I   
Sbjct: 305 KHTSLIARDGSECPIADSAAPIRNAEGALHGVVLVFRDVSAERHAEQIIREQ 356


>gi|330964286|gb|EGH64546.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 554

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 210/440 (47%), Gaps = 11/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +   A QD LTGI NRQ F       L  S   +     +  +D+D ++ 
Sbjct: 110 VHERSRLEDTLRRLAGQDPLTGIANRQGF-----QALLASRLAEGGSLALGHLDLDNFRH 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPARALQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLAEPYWVDGESLLLGCSLGIAHSPTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   E+ L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDEMELHYQPRLCLDTGRIVGLEALVRWRHQERGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  +D+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALKDMQALREQGLA-PLHMAINLSFRQFQDSQLLPTLNR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++ R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEEHNVDAHWLEFELTETAVMRRSDQVRKTMEALGRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 463 PIALLKVDMGFVEQMEAREENRKLVNAMITLAHNLNLEVVAEGVETTGQLELLRSFGCNQ 522

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q   ++ PL    +L  L+
Sbjct: 523 VQGYLISRPLPMEQLLTYLR 542


>gi|53723335|ref|YP_112320.1| hypothetical protein BPSS2318 [Burkholderia pseudomallei K96243]
 gi|52213749|emb|CAH39804.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 813

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 226 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLTKNVDFIN 285

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 286 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 345

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 346 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 405

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 406 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 465

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 466 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 525

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 526 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 585

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 586 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 645

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 646 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 702

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 703 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 762

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 763 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 807


>gi|330876457|gb|EGH10606.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 554

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 210/440 (47%), Gaps = 11/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +   A QD LTGI NRQ F       L  S   +     +  +D+D ++ 
Sbjct: 110 VHERSRLEDTLRRLAGQDPLTGIANRQGF-----QALLASRLAEGGSLALGHLDLDNFRH 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPARALQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLAEPYWVDGESLLLGCSLGIAHSPTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   E+ L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDEMELHYQPRLCLDTGRIVGLEALVRWRHQERGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  +D+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALKDMQALREQGLA-PLHMAINLSFRQFQDSQLLPTLNR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++ R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEEHNVDAHWLEFELTETAVMRRSDQVRQTMEALGRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GC+ 
Sbjct: 463 PIALLKVDMGFVEQMEAREENRKLVNAMITLAHNLNLEVVAEGVETTGQLELLRSFGCNQ 522

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q   ++ PL    +L  L+
Sbjct: 523 VQGYLISRPLPMEQLLTYLR 542


>gi|226228271|ref|YP_002762377.1| response regulator [Gemmatimonas aurantiaca T-27]
 gi|226091462|dbj|BAH39907.1| response regulator [Gemmatimonas aurantiaca T-27]
          Length = 602

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 228/448 (50%), Gaps = 14/448 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++ L+ +   A  D LTG+PNR     RL   +D +  +     ++M ID D++K IN
Sbjct: 136 ERQRMLDDLGRAAHIDPLTGLPNRALLQWRLQHAIDRARRNVEESFSLMFIDFDRFKLIN 195

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPD---------ILARLSGNRFGIILISENNSLKIA 631
           D LG A GD +L  L +R+ + L+  D          +ARL G+ F +IL    ++    
Sbjct: 196 DSLGHAFGDMLLAELGQRLRDSLRVQDSLARDVSGTTVARLGGDEFIVILEGTRDAAAAT 255

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  + + I +P +L +  +  +ASIG          +++ML++A++AMY AK RG   
Sbjct: 256 VVADRLIEVIELPYHLDQHIVRSSASIGIVHSGGGYTEAADMLRDADIAMYEAKARGKGC 315

Query: 692 VESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F          R+ ++  L  A+   +++L Y PI+ L D  +  +E L++W HP+ 
Sbjct: 316 HAVFTNDMREAVRYRMQLENALREAIGTDQMFLAYQPILSLEDRRLECVEVLLRWRHPEL 375

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDN 808
           G+IS ++F+ IAEE  +I  ++  +L +     + WR+      P +I +N++   L D 
Sbjct: 376 GSISPAQFIPIAEETRLILPLSDIVLRQACLQFLHWREHMPELAPRYISVNLSRVQLTDP 435

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + M A++ +    P  ++L  +ES +M     +  LL   ++ G+ L +DDFG   S
Sbjct: 436 QLAKRMMAILDEMGMPPECLQLEVTESQIMQQRSMASELLAEFKRHGVRLAMDDFGAGYS 495

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS L   PFDT+K + +L    +  R   A+L +++ +A+N+   I+A+ I     +  
Sbjct: 496 SLSCLQEYPFDTLKVDRTLTDNISRGRGFSALLHAVVSLAENLGLEIVAEGIERVDQLVL 555

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L  +G  Y Q   +  PL  +++ +  +
Sbjct: 556 LQALGYTYGQGFLLGRPLTADALEEWAR 583


>gi|317127021|ref|YP_004093303.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
 gi|315471969|gb|ADU28572.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus cellulosilyticus DSM 2522]
          Length = 762

 Score =  419 bits (1078), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 216/444 (48%), Gaps = 12/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S   I   A  D LTG+ NR  F  R   ++   A     R  ++ IDID +K+IND L
Sbjct: 325 QSQTEIQKLALTDELTGLSNRNDFRSRFEVMVKAEAQQ---RIAILFIDIDLFKRINDAL 381

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD V+   ++++ E +    I+ R  G+ F + L  E     +   +  +   IA 
Sbjct: 382 GHYVGDTVIKETSKKLKENIPPDAIVGRWGGDEFIVALPFEEERE-VVTLSKQLLLDIAR 440

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSF 700
           PI +      +T+SIG ++  +      ++++ A++AMY AK  G N    ++     ++
Sbjct: 441 PIVMKGYTFEITSSIGISTAPNDAKEPEDLIRQADIAMYEAKRHGKNQYRFYQDVAKYAY 500

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  V ++ DL  A++N+E  + Y PI+   D  ++G+EAL++W++   G I   +F+ +
Sbjct: 501 FNHYVSLENDLRYALQNNEFNIYYQPIMN-ADGNVLGVEALLRWENRDKGMIPPDKFIPV 559

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEEL M+  I  ++L+   R +  W +      I + +N++   L+ N+ C  ++  + +
Sbjct: 560 AEELGMMPFIGKWVLKESIRQVKRWHE-LGYEDISLSVNVSKTQLVSNDFCSIVKTTLEE 618

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             + P  + L  +ES V    E+  L    L ++G+ ++LDDFG   S L YL  I  D 
Sbjct: 619 CDFPPELLVLEITESDVAIYMEKLTLASKVLTEMGVKISLDDFGMGASSLHYLKEIFVDQ 678

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S + G        A+L  I+ + K ++  ++A+ I  E     L        Q  
Sbjct: 679 LKIDRSFVNGIPSDSFDSALLSGIVTLCKKLKIEVVAEGIETEEQYIYLKEDNISL-QGY 737

Query: 939 HVASPLGFNSILKLLKERFPLVKN 962
           + + PL  + +   + E+   ++N
Sbjct: 738 YFSKPLPKDEVEMFIIEKNNSIEN 761


>gi|148547751|ref|YP_001267853.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148511809|gb|ABQ78669.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 775

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 99/435 (22%), Positives = 197/435 (45%), Gaps = 7/435 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +         A  D+L+G+ NR+ F++  +  L            ++ ID+D++K 
Sbjct: 328 IVRLEDEHRRSSHAAATDHLSGLHNRRQFVEVASQALTR-QRGKRRLMAILFIDMDRFKS 386

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L ++  RI  LL+  D  +R  G+ F ++L  E +  +I  +   + 
Sbjct: 387 INDSLGHKIGDLLLQAVAGRIQRLLEPGDEASRFGGDEFVVLLAGERSEEQINAWVHELV 446

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + ++    L  +E+  + S+G +           ++++A+ AMY AK  G      F   
Sbjct: 447 QKLSAAYALDGQEVNTSPSVGVSICPRDGQDIDSLIRSADAAMYSAKQAGRAQYRFFDPS 506

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +        +++    A+   +  L Y P +RL   +++  EAL++WDHP +G +    
Sbjct: 507 LNLADVQAFTLEQAFGSALAERQFVLHYQPQMRLDTHQVLAYEALVRWDHPDFGLLYPDR 566

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +   +L      + SW  Q       + +N+++  L   +  + + +
Sbjct: 567 FIGLAERSGFIVELGWEVLRLACEALSSWNAQGRKT--RLAVNVSALQLRQADFADRLLS 624

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     +P +++L  +E+ ++     +   L  LR  G+ ++LDDFG   +  ++L  +
Sbjct: 625 KLQHHGIAPQQLELEITETTILDPEGMAVAHLHTLRGAGLGISLDDFGRGYAGFAHLHSL 684

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + SL+     +     I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 685 PLSKLKIDRSLIAALSNSHDDSPIVSSTIILAKRLGLEVVAEGVETREQVVYLKLAGCDI 744

Query: 935 IQDSHVASPLGFNSI 949
            Q  H + PL    +
Sbjct: 745 AQGYHFSRPLSLPQL 759


>gi|152989439|ref|YP_001351385.1| hypothetical protein PSPA7_6068 [Pseudomonas aeruginosa PA7]
 gi|150964597|gb|ABR86622.1| hypothetical protein PSPA7_6068 [Pseudomonas aeruginosa PA7]
          Length = 550

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/438 (25%), Positives = 211/438 (48%), Gaps = 9/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      +   A QD LTGI NRQ F   L   L      D     +  +D+D ++ +N
Sbjct: 105 ERMGLQATLQLLAEQDPLTGIANRQGFQTLLAARLS---EFDGRGLVLGHLDLDNFRHVN 161

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +++ +  R+   ++  D LARL  + F ++L +  +  +    A  + + 
Sbjct: 162 DALGHQGGDRLILQVVNRLRGFMENGDRLARLGSDEFALLLDTRRDPQRAERIAERIVEC 221

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +    I +  S+G A   +    +  ++ +A +AM  AK R G     F     
Sbjct: 222 LGEPYWVDGESILLGCSLGLAHARAD-EGADPLMWHAHIAMQQAKSRQGCTFHVFDERIN 280

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R  R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G ++ S+F+
Sbjct: 281 RGVRSLADLEAELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHGERGLLTPSDFV 340

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  +++ R  RD+  W +   + P+ + +N++ +   D++L   +Q LI
Sbjct: 341 PLAEESGLIVPLGYWVIARALRDM-QWLNGRGLAPLHMAVNLSFRQFQDSQLLPTLQRLI 399

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++   +E+ VM   ++    +  L ++G+  +LDDFGT  S   +L  +P 
Sbjct: 400 EEHGVDARWLEFELTETAVMRRSDQVLQTMQALGRLGVRFSLDDFGTGFSSFVHLNSLPI 459

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G     +   ++R++I +A N+   ++A+ +      ++L   GCD +Q
Sbjct: 460 TLLKIDRSFVGGMDLRAENFQLVRAMINLAHNLNLEVVAEGVETLRQQEQLRDFGCDQVQ 519

Query: 937 DSHVASPLGFNSILKLLK 954
              ++ PL    + + L+
Sbjct: 520 GYWISRPLPLAELARFLE 537


>gi|167033669|ref|YP_001668900.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166860157|gb|ABY98564.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 775

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 198/438 (45%), Gaps = 7/438 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +         A  D+L+G+ NR+ F++     L            ++ ID+D++K 
Sbjct: 328 IGRLEDEHRRSSHAAATDHLSGLHNRRQFVEVAGQALTR-QRGKRRLMAILFIDMDRFKS 386

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L ++  RI  LL+  D  +R  G+ F ++L  E +  +I  +   + 
Sbjct: 387 INDSLGHKIGDLLLQAVAGRIQRLLEPGDEASRFGGDEFVVLLAGERSEEQINAWVRELV 446

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + ++    L  +E+  + S+G +           ++++A+ AMY AK  G      F   
Sbjct: 447 QKLSATYALDGQEVNTSPSVGVSICPRDGQDIDSLIRSADAAMYSAKQAGRAQYRFFDPS 506

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +        +++    A+   +  L Y P IRL  ++++G EAL++WDHP++G +    
Sbjct: 507 LNLADIQAFTLEQAFGSALAERQFVLHYQPQIRLDTQQVLGYEALVRWDHPEFGLLYPDR 566

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +   +L      + SW  Q       + +N+++  L   +    + +
Sbjct: 567 FIDLAERSGFIVELGWEVLRLACEALSSWDAQGRET--RLAVNVSALQLRQGDFAARLLS 624

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     +P +++L  +E+ ++     +   L  LR  G+ ++LDDFG   +  ++L  +
Sbjct: 625 QLQHHGIAPQQLELEITETTILDPEGTAVTHLHTLRGAGLGISLDDFGRGYAGFAHLHSL 684

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + SL+     +     I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 685 PLSKLKIDRSLIAALSNSHDDSPIVSSTIILAKRLGLEVVAEGVETREQVVYLKLAGCDI 744

Query: 935 IQDSHVASPLGFNSILKL 952
            Q  H + PL    +   
Sbjct: 745 AQGYHFSRPLSPAQLCDY 762


>gi|70733314|ref|YP_263088.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68347613|gb|AAY95219.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 524

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 214/440 (48%), Gaps = 9/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+      +   A QD LTGI NRQ F   L   L     ++     +  +D+D ++ 
Sbjct: 77  VRERGLLENTLQRLAEQDPLTGIANRQGFQTLLAARLA---ENEGRGLALGHLDLDNFRH 133

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L+  D LARL  + F +++ +     +    A  + 
Sbjct: 134 ANDALGHQAGDRLILQVVSRLKSQLEAGDQLARLGSDEFALLIDTRRAPQRAEWMAERIT 193

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   ++   +  ++ +A +AM  AK   G     F   
Sbjct: 194 EAMAEPYWVDGESLLIGCSLGIAHARANA-GADPLMWHAHIAMQQAKSTQGCTFHIFNER 252

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D +IVGLEAL++W H + G +  SE
Sbjct: 253 INRNARSLADLESELRRALRRDELELHYQPRLNLHDGKIVGLEALVRWRHGERGLLPPSE 312

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R++   PP+ + +N++ +   D++L   +  
Sbjct: 313 FVPLAEQSGLIVPLGYWVISRALRDMQALRERGL-PPLHMAVNLSFRQFQDSQLLSTLSR 371

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   +  +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 372 LIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 431

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G    E+   ++ ++I +A N+   ++A+ +     +  L   GCD 
Sbjct: 432 PITLLKVDKSFVGGMEQREENRKLVHAMINLAHNLNLNVVAEGVETAEQLALLRGFGCDQ 491

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q   ++ PL    ++  L 
Sbjct: 492 AQGYLISKPLPLAELMDYLT 511


>gi|13476852|ref|NP_108421.1| hypothetical protein mll8296 [Mesorhizobium loti MAFF303099]
 gi|14027613|dbj|BAB53882.1| mll8296 [Mesorhizobium loti MAFF303099]
          Length = 446

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/431 (27%), Positives = 207/431 (48%), Gaps = 7/431 (1%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR    D   T++  +      R  V+ +D+D++K+IND LG A GD VL
Sbjct: 5   AVHDGLTGLHNRTFLTDHFDTLIKGAHRR-RERLAVVQLDLDRFKQINDTLGHAAGDYVL 63

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V   +R+ +  +  D+ ARL G+ F +IL    ++  I   A  +   I  PI      I
Sbjct: 64  VVTAQRMRDSCRASDLCARLGGDEFVMILNGAGSTEDINMLARRILAHINEPIVFQGTTI 123

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
              AS G A +      + ++L +A+LA+Y AK  GG +   F     R    R  ++ D
Sbjct: 124 LPGASGGIAVYPIDADNAQDLLVHADLALYSAKKLGGGNFSFFSEELRRELDYRKQLEHD 183

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           + +A+      + + P + L D  I G+EAL++W+H + G IS  EF+ +AE+   +  I
Sbjct: 184 IKVAISERAFQVYFQPQVSLTDGTISGIEALVRWNHHERGMISPGEFIPVAEKCGFMPEI 243

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++ +   +   W          + +N++  +L +++    +   + K    P ++ L
Sbjct: 244 GRIVIGKAINEAAEWNRAGIAFG-RLAVNVSGTELREHDFDAFLFETLEKAGLPPQKLSL 302

Query: 831 SFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              ESV++ + +      L  +R  GI L LDDFGT  + LS++     D +K +   + 
Sbjct: 303 EIVESVILDDEKTGIAAKLRHIRAAGIHLELDDFGTGYASLSHVNPNEIDRLKIDRRFVQ 362

Query: 890 GSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              E      I+R+I  +A+ +  +I+A+    E ++  L  +GCD +Q   +A P+  +
Sbjct: 363 NIHENGDNSKIVRAITELARGLGISIVAEGAETEAELDSLMAIGCDQVQGYSIAFPMPQD 422

Query: 948 SILKLLKERFP 958
             L+ L  R P
Sbjct: 423 KALEWLTARMP 433


>gi|302537079|ref|ZP_07289421.1| LOW QUALITY PROTEIN: phosphodiesterase [Streptomyces sp. C]
 gi|302445974|gb|EFL17790.1| LOW QUALITY PROTEIN: phosphodiesterase [Streptomyces sp. C]
          Length = 765

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/409 (27%), Positives = 212/409 (51%), Gaps = 7/409 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+PNRQ  L+R  + LD +      R  +++ID+D+++ +ND LG   GD +L+
Sbjct: 285 LRDPLTGLPNRQWLLERAWSALDEAER-QGTRSALVLIDLDRFRAVNDTLGHLAGDRLLL 343

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+ + L      ARL G+ F ++L + +++      A  +   ++ P++L    + 
Sbjct: 344 QIAERLRQALPADAEAARLGGDEFAVLLPTTDSTTSAQRVARNLVAELSSPLDLDGLTLV 403

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
           + AS G A +    + +  +L+ A++AMY AK  R G  V   +  S   DR+ +  DL 
Sbjct: 404 LEASAGLAVFPDHALDAEGLLRRADVAMYQAKRDRTGVEVYESKRDSNTPDRLGLLGDLR 463

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  E+ L Y P +R  D ++ GLEAL++W HP+ G +   EF+ IAE   ++  +  
Sbjct: 464 RALDAGEVELHYQPKVRF-DGQVAGLEALVRWVHPERGRVPPDEFIAIAETSGLMPHLTE 522

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE     +  WR Q    P  + +N++ +D+        + A +++     S ++L  
Sbjct: 523 YVLETALAQVARWRAQGLKVP--VAVNVSPRDVHTPGFAGAVAARLARHGVPASGLQLEI 580

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E V++ +P+R+   +  L   G+ ++LDDFGT  S L +L  +P   +K + S +    
Sbjct: 581 TEHVLLEDPQRAADTMAGLTGHGVKMSLDDFGTGYSSLVHLRRLPVSELKIDRSFVARLA 640

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
              +   I+R  + +A ++   ++A+ +  +   + L  +GCD +Q   
Sbjct: 641 VDAQDAEIVRCTVDLAHSLGLLVVAEGVEDDETWERLRDLGCDAVQGWL 689


>gi|330501224|ref|YP_004378093.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915510|gb|AEB56341.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 549

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/437 (26%), Positives = 210/437 (48%), Gaps = 9/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ      +   A QD LTGI NRQ F   L   L            +  +D+D ++  N
Sbjct: 105 EQGNLKHTLQRLAEQDPLTGIANRQGFQTLLAARLAEC---GGRGLVLGHLDLDNFRHAN 161

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +++ +  R+  LL+  D LARL  + F ++L    +  ++   A  + + 
Sbjct: 162 DALGYQGGDRLILQVVARLKNLLQPCDQLARLGSDEFALLLDVRRDPQRVERLAERVTEV 221

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +    + +  S+G A   +    +  +L +A +AM HAK + G     +     
Sbjct: 222 LGEPYWVDGESLLIGCSLGLAHARA-GEGADPLLWHAHIAMQHAKSQQGCVFHVYDERLN 280

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           RS R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +S +EF+
Sbjct: 281 RSARSQADLESELRRALRRDELELHYQPRLCLKSGRIVGLEALVRWQHSERGLLSPNEFV 340

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  +++ R  RD+  W     +P + + IN++ +   D++L   +  LI
Sbjct: 341 PLAEETGLIVPLGYWVISRALRDM-QWLRGRGLPALHMAINLSFRQFQDSQLLPTLSRLI 399

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++   +E+ VM   ++ +  +  L ++G+  +LDDFGT  S   +L  +P 
Sbjct: 400 EERGVDAQWLEFELTETAVMRRSDQVQQTMLALGRLGVRFSLDDFGTGFSSFVHLNSLPI 459

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G  E  +   ++R++I +A N+   ++A+ +     +  L + GCD +Q
Sbjct: 460 TLLKIDRSFVGGMGERAENRQLVRAMINLAHNLNLEVVAEGVENIEQLDMLRQFGCDQVQ 519

Query: 937 DSHVASPLGFNSILKLL 953
              ++  +    + + L
Sbjct: 520 GYLISKAVPLAELARFL 536


>gi|170079454|ref|YP_001736092.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
 gi|169887123|gb|ACB00837.1| sensory box/GGDEF family protein [Synechococcus sp. PCC 7002]
          Length = 610

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 219/436 (50%), Gaps = 11/436 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQ----SFLDRLTTI-LDLSATDDNLRPTVMVIDIDKYKKI 579
             E +   + +D+LTG+PN+     +F   +  + L    ++      ++ I +D+++ +
Sbjct: 152 YSEQLNQLSEKDSLTGLPNQNRITYAFEKVVAQLPLGQEDSETVPSTPLLSIGLDRFQLL 211

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+ LG  +   +L  +  R+ + L+    +  L+ + F  IL    +  +I + A  +  
Sbjct: 212 NEYLGHGIVSALLKQVGDRLQQTLEKYGTVVSLNTSEFCAILHPLEHRHEIVNIAEEILA 271

Query: 640 SIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + + P    ++ ++ ++ SIG A +    IT  E+L NA  AM   + +GGN    + V+
Sbjct: 272 AFSSPFTTEDQQDVFISLSIGIALYIRDGITLDELLSNAHTAMLRVQKQGGNQHAFYSVA 331

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               R + V ++ DL  A+E +EL +VY P + L   ++VG EAL++W HP  G +  ++
Sbjct: 332 MNVGRLNTVSLEADLRQALERNELEVVYQPKMNLQTGKVVGAEALLRWFHPTRGLVLPNQ 391

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  I  +++E     +  W+  A +   ++ IN+++K      L   +  
Sbjct: 392 FISLAEETGLIIPIGEYVMEEACCQLRRWQ-LAGLKDFYMSINLSAKQFTQLNLHHRLSQ 450

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++      P  I+L  +ES ++ N E S   L  LR +G+ + LDDFGT  S LSYL   
Sbjct: 451 IMINNQLQPQDIQLELTESTLVNNGEVSIRRLKALRSLGLKIALDDFGTGYSSLSYLQQF 510

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            FDT+K + S + G         I+ +II MA N+   ++A+ +  E +++ LTR  CD 
Sbjct: 511 SFDTLKLDRSFIHGIHRNHVNATIITAIIEMAHNLNLKVVAEGVEDEGELEFLTRFNCDE 570

Query: 935 IQDSHVASPLGFNSIL 950
           IQ    + P+     L
Sbjct: 571 IQGFLFSRPIKAEEFL 586


>gi|94502164|ref|ZP_01308663.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Oceanobacter sp. RED65]
 gi|94425711|gb|EAT10720.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Oceanobacter sp. RED65]
          Length = 561

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 261/577 (45%), Gaps = 34/577 (5%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAV--LGSGDIVWDWDIVRDRVTTTP 432
           ++ V++     +   +   Y +Q  +    +RQ+LA+    +   V + +     +   P
Sbjct: 1   MIFVLIFTMVTLIAGIYVAYITQINLKRRAQRQALAMFPERNPSPVMNLNWQGQILFANP 60

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             + +L      ++  I      +      NF   L  +   R+    +E  ++      
Sbjct: 61  ACSELL----QRLNMDINRTEELLP----ANFYRNLKRWQNDRKTLECFESEIKGRQ--- 109

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             +   +  + +    +        DITE+K++ E +   A+ D  TG+ NR+ F   L 
Sbjct: 110 --LAYNLSLLPD----LGSCHLYIEDITERKQAEEQLHYQAYHDIHTGLANRRQFELDLG 163

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL--- 609
            I++       L  +VM I ID++K I    G  +GD ++    RR+    +  D     
Sbjct: 164 LIIE-----QKLPISVMFIAIDRFKFITASQGYFIGDQIIKEFGRRLVHECEQLDFEALS 218

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            RL G+ F +++ S  +     D + A++ S+  P+ + E    +T S+GF  +  +   
Sbjct: 219 YRLDGSTFCVLVNSPKS-QHAWDTSHAIQNSMDAPLQVGEHRYYLTLSMGFCHFPENGRD 277

Query: 670 SSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           +  ++ N   A+  AK +G N    S +  +     + I+E +  A+E  +  L Y   +
Sbjct: 278 AKALITNGNAALNSAKLKGDNIAQYSEQHHAQEQSWLPIEEKIRKALEWDQFELHYQAKV 337

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
              D  I G EALI+       +IS   F+ +AE+  +I  I  +++E+  R   +W DQ
Sbjct: 338 DGQDHSIKGAEALIRLKDENGNHISPGRFIPVAEQTGLIIKIGQWVIEKGFRQAKAWDDQ 397

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                I + INI+++   D      +Q  +S+T  +P+ I+L  +ES++M N E+S  ++
Sbjct: 398 G--DKIKLAINISARQFQDRNFLIHLQQQLSETQVNPALIELEITESLLMDNAEQSIFIM 455

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
            +L+ +G +L +DDFGT  S L+YL   P DT+K + + +      +    I+R+I+ + 
Sbjct: 456 KQLKAMGFALAIDDFGTGYSSLAYLKRFPIDTLKVDQAFVRNLETDKDDQNIVRAIVSLG 515

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +++   I+A+ +     +  L  +  +YIQ    + P
Sbjct: 516 QHLNLEIVAEGVETSGQLSFLNTLNVNYIQGFLFSKP 552


>gi|259415387|ref|ZP_05739308.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348617|gb|EEW60379.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 684

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 237/557 (42%), Gaps = 23/557 (4%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           GD +   D     +       +  GL    + G    W   IH   +   ++  D+ +  
Sbjct: 134 GDSMALLDAEARVIDANRQFESEAGLPLAQIRGRPI-W--SIHA--KGFGKSFWDTALEE 188

Query: 475 RR--GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            R  G  + E R  + D       + +R +     ++          + +          
Sbjct: 189 ARTQGNWRGEARTLSEDLHPETETLSVRAL-----EVADAESTYEFRSRRSFHPTPNRTG 243

Query: 533 A----FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           A     +D LTG+P+R++   ++   +  +    N +  ++VID+D+++ IN + G  +G
Sbjct: 244 AIDTRLRDTLTGLPSRRAMKSQVEFAIVRAKAA-NTQMALIVIDLDRFRDINSIFGDDIG 302

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D VL  L   +  + +    + R+ G+ F +++    N   +   A  +  ++   + + 
Sbjct: 303 DRVLERLADAMRSVARTGITIGRIGGDEFILLIEHATNPDMVMQVANDISAALGDEVVVD 362

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
                ++AS+G A +     +   +++ A +++ HAK +G   V  +   +     + + 
Sbjct: 363 GLTCRLSASMGIAQYPKDGASQRNLMQAAGVSLCHAKAKGRGQVCFYSENMEQRSEESLQ 422

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ DL  A+ + EL + Y P + L   + +G EAL++W HPK G +    F+ +A +  +
Sbjct: 423 MENDLRRAISDGELLMFYQPQVDLRTGQCIGAEALLRWQHPKKGLLLPGGFVPLALDTGL 482

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
             AI+ F+ + +   I  W+     P   I +N+++  LL  +    ++A  +      +
Sbjct: 483 TTAIDRFVTKEVCAQIERWKKAGFAPG-KISVNMSAMTLLSPDFARDLKATAAAHEVDLA 541

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++   E+ +      S   +  LR +G+ L +DDFGT  S L+ L  +P D +K +  
Sbjct: 542 LLEIEVLETTLFPRMRSSLSTVDDLRTMGVQLAIDDFGTGYSSLALLKDLPIDRIKLDRR 601

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +       K   I+ +++ M ++++ ++IA+ +        L  +GC   Q    + P+
Sbjct: 602 FIKSLPQNTKDDRIVAAVVAMGRSLDISVIAEGVETREQRDRLISLGCTEAQGFLFSRPI 661

Query: 945 GFNSI-LKLLKERFPLV 960
             +      LK   P  
Sbjct: 662 AASEFAENWLKVDQPKT 678


>gi|239994766|ref|ZP_04715290.1| sensory box-containing diguanylate cyclase, putative [Alteromonas
           macleodii ATCC 27126]
          Length = 706

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/554 (22%), Positives = 241/554 (43%), Gaps = 19/554 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
             A+      V   D     +        +L     S           +   D D     
Sbjct: 164 QQAIHNLETGVVILDDKGGLILDNKASHRLLLC--NSTTPSSIRVNELL--TDID-APAT 218

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               +  R+   Q E   +  D+   W+ + I P+   + ++  ++ +  DIT      E
Sbjct: 219 FLPALVQRKAPWQGELYWQPVDDYGVWLQVTIHPVLQGD-ELTHWVYLLTDITHIHNKEE 277

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +L  +  D+LT + NR  F D +  ++      + +   + +IDI  +KKIN+ L    
Sbjct: 278 SVLTASGMDSLTKVANRNLFTDTVRRLV-----QEEIAFKLFIIDICDFKKINESLSYQS 332

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI-ADFAIAMRKSIAMPIN 646
           GD++L S   R+   +     +AR+  N F ++   +  +  I A++   + K +     
Sbjct: 333 GDEILKSFALRLQTFVGNSGFIARIGSNEFALVKREDTFNELISAEYIEQLVKKLTQTYT 392

Query: 647 -LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L   E  +  +IG A++     ++  +L+ A++A+  AK++G N V ++     +    
Sbjct: 393 VLNGSEPNLGINIGEANFPRHCPSTESLLQCADIALQAAKYQGRNVVLTYSEELHKQHHA 452

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  L  A+EN+EL L   PI+ L   +IV  EAL +W  P+   IS   F+ +AE+
Sbjct: 453 ISELESQLRSAIENNELKLFLQPIVDLETGKIVKCEALARWITPEGKFISPEVFIPLAEK 512

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I     +++      I + +       I + INI+ + + D  L   ++  +     
Sbjct: 513 SELIFPFGEWLINEACDAIEALKAS--NLDIRLAINISGRQVSDLALLNQIKNALEDHQL 570

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             S + +  +ESV + + +   +LL  LR +GI++++DDFGT  S L YL  +P D +K 
Sbjct: 571 PGSNLSIELTESVFVESLDTVSVLLNELRAMGITVSIDDFGTGFSSLVYLKKLPIDELKI 630

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++         AI+++I+ +A N+   IIA+ I  +   + L    C Y Q     
Sbjct: 631 DRSFVSELEKNTDDQAIVQAILGLASNLNIKIIAEGIETQQQQQFLQNHRCAYGQGYLYQ 690

Query: 942 SPLGFNSILKLLKE 955
            P+     + L ++
Sbjct: 691 RPVAIPEFITLAQK 704


>gi|220911014|ref|YP_002486323.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Arthrobacter chlorophenolicus A6]
 gi|219857892|gb|ACL38234.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Arthrobacter chlorophenolicus A6]
          Length = 513

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/446 (27%), Positives = 223/446 (50%), Gaps = 8/446 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++   +   A QD LTG+ NR + +D L   LD + T     P ++++D+D +K IND
Sbjct: 69  LHEAHLKMQKMAMQDPLTGLANRSALIDALRAALD-ADTASEEGPVILLMDLDAFKSIND 127

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD VL+++ +R+   ++  D++ARL G+ F I++ +     + A     +  ++
Sbjct: 128 SMGHTAGDQVLITVGQRVRNAVRATDVVARLGGDEFAIVMPAVA-PDQAAIVGHRILAAL 186

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + PI L  + +   ASIG +  +    T  EML  A++AMY +K  G N +  F      
Sbjct: 187 SEPIELPGKSVRCGASIGLSVGSP-GQTPEEMLMEADVAMYASKAEGQNRLHRFEPGLLL 245

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R+   + EDL  A+ N  L L Y P++ L+   + G+EAL++W+HP  G I   EF+ 
Sbjct: 246 VRRLRSQLVEDLRAAIRNDGLMLYYQPVVDLVSGRLEGVEALVRWNHPTRGFIMPDEFIP 305

Query: 760 IAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           +AEE  +I  +  ++L    + + +W  D        + INI++ DL   +  E ++ ++
Sbjct: 306 LAEEAGLISELGNWVLRTAVQQLRAWIDDSLVDGDFSVRINISATDLQSLQFIEDVRNVL 365

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P ++ L  +E  ++   E  R  L  LR +G+ + +DDFGT  S +SYL  +P 
Sbjct: 366 RDTGVKPDQVVLELTEVAIVKGNELDRYSLAGLRGLGVGIEIDDFGTGYSSISYLRRLPV 425

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK + SL++G      + A++ +++ + +      + + +        L  +GC   Q
Sbjct: 426 DRVKVDRSLISGLGTDPGQPALVAAVLQLVRACGLEAVWEGVETAEQADILRELGCLSAQ 485

Query: 937 DSHVASPLGFNSILKLLKERFPLVKN 962
             + + P+  + I  LL ++      
Sbjct: 486 GYYFSRPVPPDDIPALLADQQESAHR 511


>gi|170694554|ref|ZP_02885706.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170140436|gb|EDT08612.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 612

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 250/558 (44%), Gaps = 21/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D++   D     +  +      +G     +     +    +   D      +L    
Sbjct: 55  GAVDLLAHVDSDLRFIYVSDASLRFIGYHREYLETITLH--ELVAQADVARLDALLVRAS 112

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                       +++     + + + +R + NS+  I  +     D++  + S E ++  
Sbjct: 113 ASGNVEKATLGLIKSL---TYPITVELRVVRNSHNGIDGFAIAGFDVSAWRASEERLIQA 169

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D LT + N+ + +  L      +         ++++DID Y+++N  LG   GDD+L
Sbjct: 170 LHLDRLTNLANQSALIPALLEAQQQADAH-GTPAALLLLDIDDYQRVNRALGYDAGDDML 228

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK----SIAMPINLL 648
               RRI  +    + +AR++ + F I++    N    A  A A+ +    +I  P    
Sbjct: 229 RDTARRILNMTGPNETVARVASDEFAILVKPAANRTDAAAAAEALARRLLTAIQQPYVFS 288

Query: 649 EREITVTASIGFASWTS--SKITSS----EMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            +++ ++ASIG A +        ++     +L+ A+ A+  AK  GGN +  +    +  
Sbjct: 289 GQQVHLSASIGIALYPDVRHANDTAAHDTHLLRWADHALLQAKSAGGNTLAFYVPDDNPA 348

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI       +VG+EALI+W HP  G +  S F+ +
Sbjct: 349 DAERLKLEADLYDGVRNGEFSLHFQPITSSRTHGVVGVEALIRWMHPVHGLVPPSMFIPL 408

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     +I W  +      ++ +N++ +   D    + ++  I  
Sbjct: 409 AESVGLINFLGNWVLKVACMQLIQWDARGISLQ-YVAVNVSPQQFRDPRFKDAVREAIEL 467

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R+    +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   
Sbjct: 468 TGIDPRRLVFEITESLLMHDPAHAKVLLEDLTAMGIRFAVDDFGTGYSSLAYLQRFPLAK 527

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ  
Sbjct: 528 LKIDRSFVENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEAQRSLLTEMGCDHIQGW 587

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + R
Sbjct: 588 LVCKALPSDELAQRFEAR 605


>gi|332561061|ref|ZP_08415379.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides WS8N]
 gi|332274859|gb|EGJ20175.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides WS8N]
          Length = 878

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/568 (21%), Positives = 239/568 (42%), Gaps = 21/568 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + + +     +  +  S   +   +     V    +   +L L        +  
Sbjct: 314 DRKVLERELATRNAFLTAVLQTSVSAIVALNAEGGIVYANDEARRLLVLQPHRGGLRMEA 373

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDI 509
            L  +  + R      + S +    G   ++ R  +R  D QF  + I   P+  +  + 
Sbjct: 374 VLETL--DGRPLPEADMPSALVRATGAPLHDLRYAIRRPDGQFGILSINAAPLPQAADE- 430

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            R +    DIT  + S E +   A +D LTG+ NR++  D + T L  +A        ++
Sbjct: 431 ARIVISVTDITHAEASAERLRRQAAEDPLTGLANRRALADAVETRLTEAA-----PFALV 485

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K +ND+     GD VL     R+  +     ++AR+ G+ F ++     ++  
Sbjct: 486 MLDLDNFKAVNDLQRHDTGDAVLRIAADRLRAVAGADCLVARMGGDEFMVLAPG-TDAAS 544

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A A+R +I+ PI +  + + + AS G A       + + ++  A++A++ AK  G 
Sbjct: 545 APRLAEALRAAISAPIEVGRQPVHLAASAGIALHPDHGTSMALLMTGADIALHAAKRAGR 604

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N       + F ++     I + L   VE   L LV+ P  R       G EAL++W  P
Sbjct: 605 NRSVLLSQAQFAAEARRSAITQALAADVEAD-LRLVFQPQFR-ACGAFDGAEALLRWTDP 662

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I  +EF+ IAEE  +I+ I+  +    AR +  W  +       + +N +++    
Sbjct: 663 RLGEIGPAEFIPIAEEAGLIQRIDAHVAVLAARQLGLWARRGWRH--RLAVNASAQTFAR 720

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E +   +++    P ++ +  +E+ +      +   +  LR+ G+ + +DDFGT  
Sbjct: 721 AGFAEELLQHLAEEDVCPQQLVVELTETSLATLSSVADHNIATLRRAGVGIAIDDFGTGY 780

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           + LSYL  I    +K +   + G           ++++I+ +A  +   + A+ +  E  
Sbjct: 781 ASLSYLHRIEATEIKIDRGFVAGLETAERRDSKPLIQAILSLAHALGLAVTAEGVETERQ 840

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
              L+  GCD +Q   +  PL   +   
Sbjct: 841 RSWLSAEGCDRLQGYLLGRPLPVEAFEA 868



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 25/226 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               G    VL+           +GL +    + +D   +         +   L      
Sbjct: 123 MARHGIRALVLMPLTDGTALTGVVGLSLFRARRPVDPAEMALLHSIAEAMGAALARRDAE 182

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +  +A    ++ +  + ER +       ++V   D+ +  V          G +  ++ G
Sbjct: 183 RRAVAARSAARDVARNLERLARVTELMTNLVIVTDVEQQIVWVNRAFERQTGHSLEAIRG 242

Query: 448 PIRNWLPYI-----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             RN+   +                + +        + Y      A  Q +W+     P+
Sbjct: 243 --RNFAEVVRGPGTDPGVCAAVAEAIRTCSSCEGETINY-----TAAGQPYWIRFNAHPL 295

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           S+++G    +  +   IT++K                 +  R +FL
Sbjct: 296 SDADGRYAGHASVETVITDRKVLERE------------LATRNAFL 329


>gi|111022717|ref|YP_705689.1| hypothetical protein RHA1_ro05753 [Rhodococcus jostii RHA1]
 gi|110822247|gb|ABG97531.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 614

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 206/448 (45%), Gaps = 7/448 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +    E +  +A  D+LTG+ NR++    L T L  S         ++ +
Sbjct: 163 IAALLAQVQARIVVEEQLRYSADHDSLTGLSNRRALYHHLDTRLAESEAGP---VAILFL 219

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K +ND  G   GD  + ++  R+    +  D+++RL G+ F ++L       +  
Sbjct: 220 DLDRLKPLNDFFGHGAGDGFISTIADRLRSTSQTDDLVSRLGGDEFVLVLGGSVGLEEAE 279

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +R  +   + L    ++ + SIG A     K T+S +L  A+ A+  AK +GGN 
Sbjct: 280 VRAQHIRDVVTERVRLGREVVSRSVSIGVAVGIPGKATTSSLLSQADQAVMVAKTKGGNA 339

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F             I+  L  A+ +  L+L Y P + L    I+G+EAL++W+HP  
Sbjct: 340 ISVFTDEMQEESEKRNMIELSLRAAIADESLFLEYQPEVDLRTGRIIGVEALVRWNHPLL 399

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  + F+ +AE   +   +  +++ +  R    WR Q     + + +N++   L   +
Sbjct: 400 GLLQPASFIDVAEATNVAGELGRWVIRKACRQWADWRSQVPELDLDLRVNVSPGQLAGLD 459

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +   +++       + L  +E+ V+ +   +R  L  L  + + + +DDFGT  S 
Sbjct: 460 FLDVVANALTEFDLRKGALCLEITENAVLSDLTWTREALEGLHAMDVEVAIDDFGTGFSS 519

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P  T+K +   +       +  AI++SII +A++    ++A+ +      ++L
Sbjct: 520 LSHLKALPVGTLKIDKGFVMNLDTNPEDRAIVKSIIGLAESFGLELVAEGVENVESARQL 579

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
             MGC   Q    + P+    I KLL  
Sbjct: 580 LDMGCHRAQGFLFSRPVSAEKIGKLLAA 607


>gi|90418505|ref|ZP_01226417.1| signal transduction protein family [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338177|gb|EAS51828.1| signal transduction protein family [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 467

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 208/424 (49%), Gaps = 12/424 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            D+L+ +PNR +F+      L+ L         T+  +D+D++K IND LG  +GD ++ 
Sbjct: 25  HDSLSKLPNRPAFVLAANQALNGLQERGRGGSLTIGYLDVDRFKDINDTLGHHIGDGLIK 84

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +   R+ + L   D LAR  G+ F  I  S          A  + ++   P+ +   EIT
Sbjct: 85  AFGERLRQHLGPHDFLARFGGDEFA-IFRSRRGVSFAKPLASLVVEAFEQPLLIEGHEIT 143

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           VTAS+G A +     +  +++++A++A+Y AK  G  H   F          +  I+ DL
Sbjct: 144 VTASLGLAQFPEHGTSIEDLMRHADIALYEAKRLGRGHAAWFTTQMAASLRQKREIEMDL 203

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   +  L Y PII      IV  EAL++W+HP  G IS S F+ IAEE+ ++  + 
Sbjct: 204 LEALNGEQFDLHYQPIISARSNRIVAAEALLRWNHPVKGMISPSVFIPIAEEIGLMSKLG 263

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L+R       W      P I + IN++      ++L   ++ LI++T  SP+ + L 
Sbjct: 264 DWVLKRAMTSAALW------PDIEVTINLSPAQFYQSDLEIRLRELIAETGVSPTMVTLE 317

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E +++    R    L  +R +G  + LDDFGT  S LSYL    FD +K + S ++  
Sbjct: 318 ITEGLLLEPSPRIMATLQAIRDLGFQIALDDFGTGFSSLSYLVEYRFDKLKIDRSFVSAI 377

Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           ++      +++++I +   +   ++A+ +    D   +   G D++Q    + PL  + +
Sbjct: 378 SQAGSAQTVVQAVIRLGHALGMEVVAEGVETVTDSVTMRFWGSDHLQGYFFSRPLPADEL 437

Query: 950 LKLL 953
           +  +
Sbjct: 438 IAFI 441


>gi|209546125|ref|YP_002278015.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538982|gb|ACI58915.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 774

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 159/760 (20%), Positives = 289/760 (38%), Gaps = 49/760 (6%)

Query: 226 WVVLGYISID--FGFLSKLVNLPSGE----LLIWRACSEIALSSSLIIFLFMY------- 272
           W +L        FG L+ +  L   +              A+      +   +       
Sbjct: 14  WTLLFVALSICCFGSLTAVFMLTRAQECVQQHHHYWLIAAAVVLGASTWATHFIAMLAYA 73

Query: 273 --LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
             +        +     + I   A    ++F         +   L  + +   +F+    
Sbjct: 74  GPVPIGYDGPLIILSIIAAIVLFAGAVEIAFMNGGQLVQASGGVLFGVAIAAMHFVGLLA 133

Query: 331 MKGYERAVL----LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +  +    L     I A  L   + I    A+           A    +VL +  +    
Sbjct: 134 ITPFSMVSLALDKSIVACALAIGFGIVAVAALRHSASRRFHIFAGAACIVLAICSLHTVS 193

Query: 387 IQ--HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           +    +  +        S  +R ++A+  S             +     +  + GLA+ S
Sbjct: 194 MSGVQITPSAEPVHADLSSVDRIAIAIAVSIISTLILLGAAAALFLDRHLTDLRGLANAS 253

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-----LQYEFRV---------RAADN 490
             G +      + I+  + F  +        +G+     L  E R+              
Sbjct: 254 FEGLVIAQENVV-IDLNEKFAAMAGKAAALLKGQPVEAVLAIERRLGIDTCQGAVLCDGQ 312

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               + I  R +    G   + I +  D+TE+ ++   I   A  D+LTG+ NR+ F  R
Sbjct: 313 DTIPVEILARTI-EYRGRECQVIAV-RDLTERHEASRRIEHMARHDSLTGLANRREFDQR 370

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
               +  +A   +    + +  +D++K +ND  G A GD VL  + + +   L     +A
Sbjct: 371 FEMAMARAAETPSGLALLALD-LDRFKLVNDTFGHAEGDAVLQRVAQVLLRTLPADVTIA 429

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F IIL +  +  +    +  ++ + A     L       ASIG A +    +T 
Sbjct: 430 RMGGDEFCIILEN-ASRQQTEALSADLQHAFAQEFADLATSSGFGASIGIALYPEHGVTD 488

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             +  NA++A+Y AK  G     +F   +      +  ++ DL  AV   EL+LVY  I+
Sbjct: 489 RRLRNNADMALYRAKSGGRGRACTFEAAMDIELHAKRQLEHDLRHAVAKGELFLVYQRIV 548

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
               +E  G EAL++W H   G ++ ++F+  AEE   I  I +++LE    +  SWR  
Sbjct: 549 DTSSQEPCGYEALLRWRHASRGVLAPADFIAAAEESGCIIPIGIWVLEEACSEAASWR-- 606

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
               P+ I +NI+    L   L E    +++KT   P R++L  +E+ +  +       L
Sbjct: 607 ---TPLTIAVNISPVQFLMPNLVEQFSHILAKTGLQPDRLELEITETALFHDRAAVLSTL 663

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMA 906
           G+LR +GI + LDDFGT  S L+ L   PFD +K +   + G        A+  ++I MA
Sbjct: 664 GQLRAMGIRVVLDDFGTGYSSLANLRDFPFDKLKIDRRFLAGIGADPTIRALFENVIEMA 723

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   +IA+ +  +  +  L       +Q      P   
Sbjct: 724 STLNLPVIAEGVETQEQLAILHASHPAQMQGFLFGKPEAA 763


>gi|53715900|ref|YP_106586.1| sensory box protein [Burkholderia mallei ATCC 23344]
 gi|76818072|ref|YP_336623.1| sensory box protein [Burkholderia pseudomallei 1710b]
 gi|52421870|gb|AAU45440.1| sensory box/GGDEF/EAL domain protein [Burkholderia mallei ATCC
           23344]
 gi|76582545|gb|ABA52019.1| sensory box/GGDEF/EAL domain protein [Burkholderia pseudomallei
           1710b]
          Length = 800

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 213 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 272

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 273 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 333 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 392

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 393 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 452

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 453 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 512

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 513 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 572

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 573 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 632

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 633 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 689

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 690 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 749

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 750 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 794


>gi|127514344|ref|YP_001095541.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella loihica PV-4]
 gi|126639639|gb|ABO25282.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
          Length = 857

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/570 (20%), Positives = 226/570 (39%), Gaps = 18/570 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +            IF   ER  + +    + V   D     +   P    +L + + S  
Sbjct: 288 MVISEQVNSLLARIFQQKERSKITLEAIAEAVILTDSWAKVIYLNPQAERLLKVKAESAV 347

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   + +              L +F+           +V+   +    M   I  +   N
Sbjct: 348 GMNLDKVFRSEPE----LNQSLFAFMASGTPTPMLS-KVKFTSHTPRLMERSISNLKGPN 402

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             I+  + +  DIT+++     +   A  DN+TG+ NR +F +RL    + + T      
Sbjct: 403 NKIIGTVIVLRDITQEELLKHQLRRRANFDNVTGLLNRCAFEERLQAFAEDAQT-----L 457

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +   D++++K IND  G   GD +L  + + I   L+   +LARL G+ FG+ L     
Sbjct: 458 AICYFDLEQFKLINDSCGHNAGDAMLKMVAKAIQASLEGQGLLARLGGDEFGLALKDLGV 517

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                     +       +        V  S G A   +  I + E+LK+A++A   AK 
Sbjct: 518 VPLAQQVKQIINAVGKQVMEHHGCHYHVGISAGVALARAPYINALELLKDADIACIAAKR 577

Query: 687 RGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           +G N V  +                   +  A+E++EL L Y PI  L  +    +E L+
Sbjct: 578 KGSNQVHFYDDKDKELTYQRNAPKWAVRIAQAIEHNELLLYYQPIKALGPQGKQRMEVLL 637

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +   P    ++ ++F+  AE   ++  ++  ++ +    +    +        + IN+++
Sbjct: 638 RIQEPCGRILAPAQFIAAAERFKLMTDVDKEVIRKTFLWLSLHEELWADH--CLSINLSA 695

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L    + + + A + +       I    +E+  + N  R+  +L +L+K G S  LDD
Sbjct: 696 NSLGAEGMVDYIIAQLERFAIPSQCICFEITETSAIQNRNRAMEMLNQLKKQGFSFALDD 755

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  +   YL  +P + VK +G  +       K  AI++SI  + + +    +A+ +  
Sbjct: 756 FGTGFASYGYLRELPVNYVKIDGCFIKSLASNAKDYAIVKSIHDVCRVMGIETVAEFVEN 815

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +  I+ L  +G +Y Q   +  P   +  L
Sbjct: 816 QEIIERLKSIGINYAQGYAIGRPKSLDQYL 845


>gi|254292657|ref|YP_003058680.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Hirschia
           baltica ATCC 49814]
 gi|254041188|gb|ACT57983.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Hirschia
           baltica ATCC 49814]
          Length = 700

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 218/439 (49%), Gaps = 10/439 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +   +    D + ++ + + I      D LTG+PNR+SF + +   L    T+      V
Sbjct: 229 VTGLVSFVIDSSTREANSQEIERLVATDALTGLPNRRSFREHIENTLAGFETNPLSNFAV 288

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + IDI+ +K +ND LG +VGD VL +   R+ E L   + +ARL  + F  + +  N++ 
Sbjct: 289 LYIDINGFKVVNDTLGYSVGDVVLKTFADRMSETLSSGEYIARLGKDEFAAVKVY-NSAN 347

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++  F   +  SI +PI + E  I +  +IG A   +    + E+  NAELA+  AK   
Sbjct: 348 ELEAFVQKVEDSIEIPIEVEEESIELDLAIGIACCPTDGHYADELTSNAELALRRAKSNA 407

Query: 689 GNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            + +  +  +          +  +L  A+  +EL L Y     +   E+ G EAL++W H
Sbjct: 408 SDSICYYDANMDDVVRHHREMVRNLRQAILKNELQLYYQMQANVQTGELKGFEALLRWTH 467

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G IS + F+ IAEE  +I  +  ++L++  ++   W       P  + +N++   L+
Sbjct: 468 PEKGPISPALFIPIAEENGLIIQLGDWVLKQACKEAALWEK-----PYKVAVNLSPMQLM 522

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              L + +  ++  T  S +R+++  +E+ +  + ERS  +L +++ +G+++ LDDFGT 
Sbjct: 523 QPNLPKRIHEILLDTGLSANRLEIELTETAIFEDRERSVHVLRQIKALGVNVALDDFGTG 582

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L  L   PFD +K +   M          A LRS++ + +N+   ++A+ +  E  +
Sbjct: 583 YSSLEVLRSFPFDKIKLDRFFMDEIETSSVAKAFLRSVLALGRNLSIPVLAEGVETENQL 642

Query: 925 KELTRMGCDYIQDSHVASP 943
           + L   GCD IQ   +  P
Sbjct: 643 RILQEEGCDAIQGFLLHKP 661


>gi|113953360|ref|YP_732008.1| GGDEF/EAL domain-containing protein [Synechococcus sp. CC9311]
 gi|113880711|gb|ABI45669.1| GGDEF/EAL domain protein [Synechococcus sp. CC9311]
          Length = 767

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/614 (23%), Positives = 255/614 (41%), Gaps = 45/614 (7%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHV-------LATGYFSQGIFSDGERQSLAVLGSGDIV 418
           I+  A     +    L+ ++ ++ +              + +     R   A  G+ D  
Sbjct: 154 ILFGAFGVAFLPAFGLLSWSSLRQLEIEQEKTARVSGLIKQLQEAQGRTYAAFEGTNDGW 213

Query: 419 WDWDIVRDRVTTTPDIATILGL------ASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            +W++  ++   +  +  +LG+      A  + H    NW  +I   D   F   LD+ +
Sbjct: 214 IEWNLQTNQCLPSLKMRRLLGIYKYHRIAQRADHSLSENWKYFIIKQDYKKFHFFLDN-I 272

Query: 473 GYRRGRLQY------EFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             + GR         E R++     +   + +      N N        +AN+IT  K+ 
Sbjct: 273 RQKTGRAHLPKVSGIEVRIKPIGSTKIQTLKVEAVVTKNVNNQPSVIALVANNITRAKEQ 332

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I   AF D LTG+ NR SF + L   ++    ++  R  +  IDID +K +ND  G 
Sbjct: 333 QQRINHLAFYDTLTGLRNRFSFEEELKNAVNGLNRNE-YRLAIFAIDIDNFKFLNDSHGH 391

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-SENNSLKIAD----FAIAMRKS 640
           A GD  L+ +  RI   L+  D +ARL G+ F II      ++ +I       A  +   
Sbjct: 392 AAGDQFLIQVANRIKSCLRANDFVARLGGDEFVIIFRLPYKSNSEIETLTTSIAGKLLAK 451

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++   +L    +  T SIG     +   +++ +L  A++A+Y AK  G N    ++  ++
Sbjct: 452 LSNAFSLKNCTVYNTCSIGICIANAGSKSTATLLDKADIALYKAKEIGRNCFYIYQAGMA 511

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE---------EIVGLEALIQWDHPKW 749
           S    +    E L   ++  E  L   PI+RL             I G EAL +    K 
Sbjct: 512 SALISKATTAERLRTFIDAGESGLCLQPIVRLDTNYSLNNKGQQRIAGYEALFRCPRLKK 571

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
              S    +  AEE  +I +I   +L+ I  ++            +I INI+    L+N+
Sbjct: 572 ---SIQYLISCAEEAGIINSITESILDGIKDELSKIHR---NKNAYISINISPIQFLENK 625

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                 + +     +P RI +  +E+ V+ +   +   +  L+K GI  +LDDFGT  + 
Sbjct: 626 FPSKFLSQLRHRDINPKRICIEITETAVLEDTNCALNHITSLQKEGIRFSLDDFGTGYAS 685

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +  L  +PF  +K + S +    ++    +++SII MAK  +  +I + +        L 
Sbjct: 686 IELLRKLPFTYLKIDRSYIQNIHQESEIKLVKSIISMAKAFDMELIGEGVETIGQKTILE 745

Query: 929 RMGCDYIQDSHVAS 942
            +GC+Y Q      
Sbjct: 746 SLGCEYAQGFLFNK 759


>gi|296102185|ref|YP_003612331.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056644|gb|ADF61382.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 704

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 210/438 (47%), Gaps = 7/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +     +   A  D LTG+ NR     R+   L  SA   N +  V+ +D+D +K++ND
Sbjct: 241 LQALNRQLELQARFDALTGLANRHQMDLRMQDCL-RSALLSNKQFAVIFLDVDHFKQVND 299

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD++L+++ +RI   L     LARL G+ F +++   ++  K+      +   +
Sbjct: 300 TWGHNVGDELLITIAQRITARLTREMTLARLGGDAFILLVPECDD-DKLQSLLSTLLDDV 358

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+++    ++ T S G + +     T  E+   A+ AM + K +G N    +R     
Sbjct: 359 RRPLSVCGHTLSTTLSAGVSRYPQDGETLHELKLKADAAMQYVKKQGQNDWAVYRTEMST 418

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +        ++L  A+E  +  L Y P     +  I G EAL++W HP+ G +  + F+ 
Sbjct: 419 AIPANPGFLQELTQALERDQFELWYQPTWHAEERTIHGFEALLRWRHPEQGVLLPNLFLP 478

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E+  +I  +  + +E   R +  W +Q       +  N++       ++ + + +L+ 
Sbjct: 479 SLEQTGLIIPVGNWAIEAACRQLHFWTEQ-GFAHWTLSFNLSPVQFEQPDIFQTVSSLLQ 537

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K   SPSR+ L  +ES  + N +RS  LL    + GI++++DDFGT  S L  L  +P  
Sbjct: 538 KYNLSPSRLILEVTESTALKNLDRSIELLSAFNQAGITVSIDDFGTGYSNLLMLSVLPAK 597

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +T     EK   ++ +II +A+ +E  ++A+ I  E     LT +GCDY+Q 
Sbjct: 598 ELKIDKSFVTSMLENEKSRKLVETIINIARTMEMYVVAEGIETEEQRAVLTELGCDYLQG 657

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    I  LL +
Sbjct: 658 FLFSRPLPAEQIPWLLLQ 675


>gi|114047416|ref|YP_737966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. MR-7]
 gi|113888858|gb|ABI42909.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. MR-7]
          Length = 727

 Score =  418 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/583 (21%), Positives = 244/583 (41%), Gaps = 26/583 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   ER SL   A   S  +    ++  ++V         
Sbjct: 150 IHLACQMADQLALTLATKHTYDKEERLSLFRCATEQSRQMSMLINLHTEKVEYVNQAHEE 209

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I GLA     G     L +      +     L       + +   E +   AD   +W+ 
Sbjct: 210 ITGLAREKSIGTNLRELSFF-KQHNELAELTLAQIFRGEQAK--GEVQFNRADGSRYWLK 266

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + T++      +   A++ +LTG+ NR  F   L     
Sbjct: 267 YVVSQFITDRGNHYALV-SGEESTDEHNYKAELERLAWRCSLTGLNNRSHFNRVLEK--- 322

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                   +  ++++D+  +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 323 ------TNKGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLKHFSEINKATEIARVGS 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + +AMPI +   +I    ++      +S       L
Sbjct: 377 DEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQIEPKPALAVVDI-ASVANLFAPL 435

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 436 TCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 495

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +  +G EALI+W HPK G +    F+ IAE+  MI AI  ++LE   R +  W+      
Sbjct: 496 KTYIGAEALIRWHHPKRGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNAD- 554

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   + LL   L 
Sbjct: 555 -LSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELA 613

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 614 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTISRESQEIVSAIIAMASALN 673

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ A+ +        L +  C   Q    +  L      + L
Sbjct: 674 ISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFL 716


>gi|311696155|gb|ADP99028.1| sensory box sensor/GGDEF/EAL domain protein [marine bacterium HP15]
          Length = 574

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/529 (23%), Positives = 233/529 (44%), Gaps = 20/529 (3%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
             +       ++ G  S  + G   + L    H   R+ ++++  +     +GR +    
Sbjct: 40  RILYVNEKFRSVTGYRSDEVLGQPPSVLSSGFHS--REFYQSMWRAI--GHKGRWEGLVW 95

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            R  + + +   + I P+ + N     Y G+  D+ +     E +   A+ D LT +PNR
Sbjct: 96  NRRKNGETYPQWLMIYPVEHENHR--FYAGVFMDVGDMTADDERLASLAYYDPLTELPNR 153

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F + L   +     D      V+ ID+D +K +ND+ G   GD VL      I  +L+
Sbjct: 154 ALFQEFLKARVSQRVKDGQA-FAVLYIDLDFFKSVNDLHGHDCGDRVLQQAALCIQSVLR 212

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D++ARLSG+ F  I+   N+   +      M +S   P+ +  RE  +++S+G A + 
Sbjct: 213 RGDVVARLSGDEFAAIIELRND-DDLESVCQRMVQSFRAPVIVDHREYFLSSSVGAAVYP 271

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM------IKEDLCLAVENS 718
                +SE+L+NA+ AMY AK  G      +        R        +   L  A E  
Sbjct: 272 DHGSQASELLQNADRAMYAAKLAGRACFRIYDAIDTEQGRQAELLSEALIVSLKTAPE-- 329

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  +VY P   L   ++ GLEAL++W HP++G +S ++F+ IAE+   I  +   ++  I
Sbjct: 330 EFTVVYQPQYHLDTGKMAGLEALLRWTHPEFGAVSPADFVPIAEQRGHIHELTEHLVRCI 389

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             D+  +        + + +NI+++ + D+ L   +  L  +      R ++  +E+ +M
Sbjct: 390 ESDLSEFPASFLR-GLRLALNISARQITDSRLEALLNPLFERIRAVGWRPEIEITETHLM 448

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-- 896
               +    L    + G+ + +DDFGT  S L+YL  +P   +K +         +    
Sbjct: 449 NLSRQCLDRLAEFCEQGVVVAIDDFGTGYSSLAYLHTLPVQVLKIDRQFTQRLGGESRDS 508

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            I+ +I+ +A  +E  ++A+ I       +L  + C   Q   +A P  
Sbjct: 509 RIVSAILAIADALELEVVAEGIENAEQHAKLRELKCQRGQGYLMARPAP 557


>gi|116672311|ref|YP_833244.1| diguanylate cyclase/phosphodiesterase [Arthrobacter sp. FB24]
 gi|116612420|gb|ABK05144.1| diguanylate cyclase/phosphodiesterase [Arthrobacter sp. FB24]
          Length = 732

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 220/435 (50%), Gaps = 5/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D LTG+ NR + ++RLT      +T  N    ++ IDID +K++ND LG 
Sbjct: 281 HETLTHRATHDPLTGLANRAALMERLTASFGAGSTRRNRNEGLLFIDIDDFKEVNDSLGH 340

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L+ L  R+   ++  D++ARL G+ F I+++ ++     A  A  + +++  P 
Sbjct: 341 ERGDALLIQLAARLKGCVRSDDVVARLGGDEFAIVVMDDDAGSVTAWIADRIHRALRAPF 400

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            + +  +TVTAS+G A        ++E+L+ A+ AMY AKH G    + F    +     
Sbjct: 401 FVGDDRLTVTASMGAAQRRPETTDAAELLRQADFAMYLAKHGGKARFQLFDAEGYDHMTY 460

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +K DL  AV   +L L Y P+  L    I+G+EAL++W+HP  G ++ SEF+ +AEE
Sbjct: 461 RAALKRDLASAVPAGQLRLEYQPVADLNSGAILGVEALVRWEHPTLGLLAPSEFIPLAEE 520

Query: 764 LCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTL 822
              I A+  ++L+  +R   SWR        ++I IN+++  L +      +  +++   
Sbjct: 521 TGDIDAVGCWVLDNASRQAASWRKSLPHCGDLWIAINLSTIQLPNPRNLVAITRILADPA 580

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++ L  +E+ + G+ +     L  L++ G+ + +DDFGT  S LS L  +P D +K
Sbjct: 581 AQAEKVVLEVTETALAGSTDGGIAALKALKETGVRVAIDDFGTGYSSLSSLAVLPADILK 640

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +   + +    A+L  I+ +A+ +   +IA+ +     +  L  + C   Q   +
Sbjct: 641 IDRSFLGRQSSEAQSAAMLEGILGLARMLSLDVIAEGVEEPGQLDLLRALDCPMGQGYFL 700

Query: 941 ASPLGFNSILKLLKE 955
           A P    +I  LL  
Sbjct: 701 ARPGSAEAIETLLAS 715


>gi|330992588|ref|ZP_08316536.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
 gi|329760787|gb|EGG77283.1| Oxygen sensor protein DosP [Gluconacetobacter sp. SXCC-1]
          Length = 843

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 223/442 (50%), Gaps = 10/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++ E I   +  D LT +PNR+     +  IL  +         ++ + +D +K IN
Sbjct: 403 ERHEAKEHINRLSDFDLLTSLPNRRWLRQNMARILRRAVR---GNIMLLTVGVDNFKHIN 459

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DV G   GD+++  +  ++ E +   D L R  G++F I+   E      +  + A+ ++
Sbjct: 460 DVFGHTAGDELITQIGGKLREAISIDDTLVRSGGDQFTIVTNGEQ--QHASTLSAAILRA 517

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           +A+P ++ +  ++++AS+G A    +      +LKNAE AM+ AK  GG H   F  R++
Sbjct: 518 LAVPTHIGDVPVSLSASLGVAVHPENGEDGDTLLKNAETAMFQAKANGGGHCCFFSPRMN 577

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              SDR+++   L  A+ +  L L Y P +      + G+EAL +W  P  G +S + F+
Sbjct: 578 QQASDRLILAAALRDAIAHDRLRLFYQPQVHACSGTLYGVEALSRWIDPSLGFVSPARFI 637

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R +  W       P+ + +N++     D  L   +  L+
Sbjct: 638 AVAEETGQIEAIGKWSLRAACRQMAQWIRDGVEVPV-VSVNLSPLHFRDETLPRFVSELL 696

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T   P  + +  +ES ++ N +R+  +  RLR++G+ +++DDFGT  S LS L  +P 
Sbjct: 697 AETGIPPHSLTIEITESTMIDNYDRTIRVAQRLREMGVGMSMDDFGTGFSSLSNLAGLPV 756

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + VK + S MTG    EK  A++ +++ + +++  T++A+ +  E   + L  M CD +Q
Sbjct: 757 NEVKIDRSFMTGLESIEKVRAVVMAVVRIGQSLGMTVVAEGVEHEEQRRLLAEMECDVLQ 816

Query: 937 DSHVASPLGFNSILKLLKERFP 958
               + PL    +        P
Sbjct: 817 GYMFSKPLPAEELAAWFAAYQP 838



 Score = 68.1 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 6/163 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                      +  + +   +    +I+ +       + I       SL V  +   V  
Sbjct: 87  FDGTTFWANLSLSRIAVDGKIGYMALIRDISQEVDDREKIRL----LSLVVRETDRGVAI 142

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +      + + G     + G   + +      D      + +     R     
Sbjct: 143 LDPEFRIIYVNRAFSDMFGFGPERVTGHGLSVILAGDTTDIGILNQLHEGARNARG--FT 200

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            + R R A  +  W+   + P+ N++G+I   + +  DITEQ 
Sbjct: 201 LDIRARHASGRDIWVSAAMNPVFNNDGEIENIVVVLTDITEQH 243


>gi|118467440|ref|YP_886551.1| sensory box/response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|118168727|gb|ABK69623.1| sensory box/response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/453 (26%), Positives = 211/453 (46%), Gaps = 8/453 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  + ++ E +   A  D+LTG+ NR++ +  L   L            VM  
Sbjct: 158 IASLFAQVQARIEAEERLRYLADHDHLTGLYNRRALMAHLEARLA---PGQPGPVAVMFF 214

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +  L +R+      P ++ARL G+ F ++     +  +  
Sbjct: 215 DLDRLKAINDYLGHTAGDAFISILAQRLQRGDDAPKLIARLGGDEFVVVPDDPMSLDEAT 274

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  ++  +   + +    +T T SIG A     K ++S++L  A+ A+  AK  GGN 
Sbjct: 275 ALAYRLQSVLRERVTVDGEMLTRTVSIGIAQGIPGKDSTSDVLNRADHAVLTAKGSGGNR 334

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F  +          I+  L   +E   L L Y P I +   E++  EAL++W+HP  
Sbjct: 335 VAVFSDAMAMEIDFRNDIELHLQSVIEGGALVLHYLPEIDMRTGEVLAAEALVRWEHPTR 394

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S   F+ +AE + +   +  ++L     +   WR       I + IN++   L+ + 
Sbjct: 395 GLLSPDSFIGVAESINLAGELGRWVLRTACAEFSRWRANGVGRNIVLRINVSPVQLVTDG 454

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +  ++ +       + L  +ESVV+ + E +R  L  L  +G+ + +DDFGT  S+
Sbjct: 455 FVESVAGIMKEFGLPRGSVCLEITESVVVQDIETTRTTLTGLHNVGVQVAIDDFGTGYSV 514

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L  +P DT+K + S +   GS    + I+R++I +A      ++A+ +  E     L
Sbjct: 515 LSLLKSLPVDTLKIDRSFVAELGSNPGDLPIVRAVIALAGAFGLQLVAEGVETERAALTL 574

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
            R GC   Q   ++ P+  + +  LL + R P+
Sbjct: 575 LRHGCYRAQGFLLSKPILGSEMQTLLAKGRVPV 607


>gi|92112928|ref|YP_572856.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
 gi|91796018|gb|ABE58157.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 781

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/435 (24%), Positives = 198/435 (45%), Gaps = 13/435 (2%)

Query: 524 KSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  + +L  A   D LTG+PNR+   D     L  +        +V  +D+D +K IND 
Sbjct: 347 QEKQRLLHEAINIDGLTGLPNRRLLNDLFQEELA-AVRQRRGSISVCFLDLDGFKSINDS 405

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G AVGD+VL  +  R+   ++  D++ARL G+ F  IL    +          +   + 
Sbjct: 406 QGHAVGDNVLKCVADRLRGAVRHHDVVARLGGDEFVAILRDVEHP----RVYRHILDQLR 461

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P+++    + ++AS+G   + +    S  +L++A+ AMY AK  G N    F       
Sbjct: 462 RPMHIHGHPLELSASMGITRYPNDDSDSDLLLRHADQAMYTAKESGKNCYHFFDLESHHS 521

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           + +R  I   +  A+++ +L L Y P I      + G E LI+W HP    I    F+  
Sbjct: 522 QQERFAIGAQIQRALDDDQLALYYQPKIDYKTGRVSGFEGLIRWHHPSGELIYPGRFLPY 581

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   +   +   ++ +    + +++      P  + IN++    L++E  + +   +S+
Sbjct: 582 IEHTNIDIEVGKSVISQAVSTLEAFQK--RDLPYTVSINLSPSHFLNDEFLDHLNNTLSR 639

Query: 821 TLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
              +   R+ L   ES  + +   +   +   +++G+ L+LDDFGT  + LSYL     +
Sbjct: 640 YDMAFRKRLTLEILESTALDDAGLATSNIKACQQLGVQLSLDDFGTGYASLSYLRKFSTN 699

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S + G     +   I+++II +AK+ +  +IA+ +      K+L  MGCD  Q 
Sbjct: 700 EIKIDRSFILGMLNDPEDQMIVQAIIALAKSFDRRVIAEGVEHHATEKKLVAMGCDMGQG 759

Query: 938 SHVASPLGFNSILKL 952
              +  L     L  
Sbjct: 760 FLYSPALPLADALDW 774


>gi|85709010|ref|ZP_01040076.1| hypothetical protein NAP1_07205 [Erythrobacter sp. NAP1]
 gi|85690544|gb|EAQ30547.1| hypothetical protein NAP1_07205 [Erythrobacter sp. NAP1]
          Length = 631

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 208/437 (47%), Gaps = 12/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A  D +TG+ NR      +   +     +D+ R  ++ +D+D++K++ND+L
Sbjct: 193 RLADKMQVLARTDVVTGLANRAGLNHAMVETM--MGVNDDSRLALIWVDLDRFKEVNDLL 250

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL  + +R+ E+      +AR  G+ F I      +       A  +   I  
Sbjct: 251 GHPVGDRVLTGVAKRLKEVSPEGSTVARFGGDEFIIFCP-IVSRQDAERLASEIHAEIMR 309

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P  +    + V AS+G +    +   +  ++++A+LA+YHAK  G +    +  S  R  
Sbjct: 310 PFRIDGERLEVRASLGVSLLPENGNDADTLMQSADLALYHAKVGGRSRTCFYDSSMSRDL 369

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  I+++L  A++  EL + + PI+ L    I   EAL++W HP  G +   EF+ +A
Sbjct: 370 ARRREIEDELRAAIQRDELSIYFQPIVDLETGRIKTFEALVRWFHPHKGELRPDEFIPVA 429

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  ++  + AR   +W D      + + +N++   +       G+++ + + 
Sbjct: 430 EETGVIVTLGNWITAQAARVAATWPD-----DVTVAVNLSPLQIRAPGAALGIKSALREA 484

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +ES+ + +   +   +  L +IG+   LDDFGT  S L Y+   PF  +
Sbjct: 485 GLDPRRLELEVTESLFIEDNHSTAAFIEELSEIGVRFALDDFGTGYSSLGYINTFPFSKI 544

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++G+    K  AI+R++  M   +   I+A+ +     ++ +   GC+  Q  +
Sbjct: 545 KVDRSFVSGAQVGRKSDAIIRAVAEMGTTLGMDIVAEGLETIDQVQVVRDAGCNLGQGYY 604

Query: 940 VASPLGFNSILKLLKER 956
            +  +       LL + 
Sbjct: 605 FSRAVPDYLAAMLLAQE 621


>gi|254192533|ref|ZP_04898972.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei S13]
 gi|169649291|gb|EDS81984.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei S13]
          Length = 807

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 220 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 279

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG  + +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 280 NAAEQLLGYPAAACVGAPVSSVLMLLDKETGHAVDIVDEFWAREERTPIKREVHLLRRDH 339

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 340 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 399

Query: 551 LTTILDL-SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L   ++  +     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 400 LEIALADTASGKERADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 459

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 460 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 519

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+EN    L  
Sbjct: 520 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALENDGFRLYV 579

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 580 QPIVHTRPDSRTPERAEVLLRMMDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 639

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 640 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 696

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 697 LASRFMGELRTIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 756

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 757 AINEVAHSMRCSTVAEHVESEVELAMLRELGIDFCQGYFFAQPSP 801


>gi|326387983|ref|ZP_08209587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207484|gb|EGD58297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 950

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/582 (22%), Positives = 250/582 (42%), Gaps = 31/582 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             + GF  I   +      Q  + +   ++  A+      +  +D     V +   +A +
Sbjct: 363 GRIAGFAKITRDMTRLKEDQDRLAAMKAQRDTALGNMLHGLALFDASGRLVLSNSRLAEL 422

Query: 438 L---------GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                     G++  S+   +      +   DR    T+L   +            V   
Sbjct: 423 WDIAGARVVPGISLVSLVALMVEGCEGV---DRAFVATMLQQAIMAPPENPSQSVIVECG 479

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D+     I+ +      +G    ++   +D+TE+++    I      D LTG+PNR++F 
Sbjct: 480 DD----FIVSVSSRRLEDG---GWVATFSDVTERRRDEARIAHLVLHDLLTGLPNRENFK 532

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
                 ++L+A  D ++  V+ I++D  + +ND  G A GD V+  L  R   +    + 
Sbjct: 533 IWAVGEMELAAQRD-MQFAVVAINLDGLRVVNDTHGQAFGDHVIRELGARFKAVCGKGER 591

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL  + F    +   +   +  F   ++     PI      + V+A +G A +     
Sbjct: 592 IARLGSDDFVAGKM-VGDEAALWAFIDRLKACFQTPIEEQGLSVDVSACMGVAIFPRHGG 650

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
             + +  NA+LA++ AK   G  +  F   +   +  R  +  DL  AVE  E+ L++ P
Sbjct: 651 DPNTIFNNADLALHRAKDSLGQDLCLFDPAMDEDKRSRRQLAVDLRGAVERGEMRLLFQP 710

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
              L    ++G EAL +W HP  G +S   F+ IAEE   I AI  ++L   AR  I W 
Sbjct: 711 QHSLKSGALIGYEALARWHHPVRGVVSPDIFIPIAEETGEIFAIGEWVLSEAARVAIHWP 770

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  + + +N++       +L + + A++     S  +I+   +ES ++ +  ++  
Sbjct: 771 SH-----LKVAVNLSPVQFQQGDLLQRLIAVVLDAGVSTRQIEFEITESAIIADRTKALY 825

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIP 904
           +L R++ +GIS+ +DDFGT  S L  L   PFD +K +   +  +       AI+R+++ 
Sbjct: 826 ILRRIKALGISIAIDDFGTGHSSLDTLHAFPFDKIKIDRFFLRQAATSSQAVAIVRAVLA 885

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           + K+++  ++A+ I  E  I  L   GC+  Q  +   P   
Sbjct: 886 LGKSLDIPVLAEGIETEEQIAFLVAEGCEQGQGYYYGRPQNA 927



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 109/396 (27%), Gaps = 30/396 (7%)

Query: 167 TPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTI---FYMVNRSSMLIPTFA 223
           +  +P + ++      +      +    +I +AS +   L +     + +R  ++    A
Sbjct: 14  SGGVPVLRIYSCTV--EHHQLALVVLAALICLASAVTGMLLMRRALVVGDRRWIMGAGGA 71

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL-IIFLFMYLHWNRWHAKV 282
             + +     +        +      +    +     ++ +  +     Y    R  + +
Sbjct: 72  TGFGLWSTHFVALMGYRPDLPATYRLMPTIVSLGLAIMTVTAGLWLAARY--RGRGASTL 129

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI--IYHGMKGYERAVLL 340
           G +             +       T       LA  V+     +      M+   R  L 
Sbjct: 130 GALVVGCGVSAMHYVGVEALALPATIRFEPDLLALSVVLGVAPLEPALRLMRAQRRIELS 189

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDI-----------IQPALVGGLVLIVILIGFTVIQH 389
                L  +      MA    + + +               L G    +VILI    +  
Sbjct: 190 CILLFLGVVMLHFTGMAAIVLIPSRMDDAGRTLLSAQTMSTLTGVAATLVILICLGALAL 249

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
              T      + +   + S+      D  ++                 + G   G + G 
Sbjct: 250 ARRTDAL---LRAGEHQFSILARNISDCALYMLTPDGRVANWNTGAERLKGYVEGEVVGQ 306

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                      DR      +      R G  + E      D    W  + +  + + +G 
Sbjct: 307 PFEIFYT--PEDRAQGTPAMVLAHAAREGLYRGEGWRCRKDGTRFWAHVTLEQIHDDDGR 364

Query: 509 ILRYIGIANDITEQKKSLEGILCN-AFQDNLTGIPN 543
           I  +  I  D+T  K+  + +    A +D  T + N
Sbjct: 365 IAGFAKITRDMTRLKEDQDRLAAMKAQRD--TALGN 398


>gi|293605187|ref|ZP_06687576.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816443|gb|EFF75535.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 540

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/555 (24%), Positives = 253/555 (45%), Gaps = 25/555 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP--IRNWLPYIHINDRDNFRTI 467
            +    D     D               L     ++ G    + +   +       +R  
Sbjct: 1   MLDSLSDGFMSIDKSWRFTYLNETAERYLRQERKNLLGREIWQCYPDLVDSGYYTTYRQT 60

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             + +           R         W     R   +  G       +  D+T + +   
Sbjct: 61  AATGLPGSHTGYYAPLR--------TWFE--ARSFRHEEG----ITVLFRDVTREHEHAA 106

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSA---TDDNLRPTVMVIDIDKYKKINDVLG 584
            +   A  D LTG+ NR+  ++ L+  +  +A   T D     V+ ID+D  K++ND  G
Sbjct: 107 QLEFEASHDYLTGLANRRRCMEELSKAVADAALADTSDGTPVAVLFIDLDHLKEVNDAFG 166

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A+GD +L   + R+  +L     +AR+ G+ F ++L +          A ++  ++A+P
Sbjct: 167 HAIGDALLRDFSSRLHVVLNPACFVARVGGDEFVLLLRN-TTKAAAEACARSVLDALAVP 225

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
                R I+++ASIG A    +  ++  +L +A+ AMY AK  GG  V ++         
Sbjct: 226 FEACGRSISLSASIGIALLRDANESAETLLSHADAAMYAAKAAGGLQVRTYDAVLDRGVR 285

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           DRV ++ DL  A   ++  L + P + L D  ++G EAL++W HP+ G ++ + F+ +  
Sbjct: 286 DRVALRSDLRAAFSANQFELHFQPQLALADASVIGAEALLRWRHPERGLLTPNTFLAMLL 345

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +      +  ++L+ + R I +WR      P  I +N++++ LLD  L + +  +  +  
Sbjct: 346 DSPYEGVLVDWLLDAVCRHIAAWRQMGMHVP-RISLNLSARQLLDAGLTDKILDITRRHG 404

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SP+ + +  +E  ++ N +R+  +L  L++ GI+ +LDDFG   S LSYL  +P DT+K
Sbjct: 405 ISPASLDVEITEDCLVNNIDRATSVLAALQQAGIATSLDDFGAGYSSLSYLVRLPIDTLK 464

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +      EK +A++R I+ +A+++    IA+ +  + +   L   GCD IQ   V
Sbjct: 465 IDRSFVRELLACEKAVAVIRGIVSLARSLGMKTIAEGVESQHEADILKDAGCDTIQGYLV 524

Query: 941 ASPLGFNSILKLLKE 955
           + PLG  +  + L+ 
Sbjct: 525 SRPLGAQAFEEFLRR 539


>gi|158312850|ref|YP_001505358.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158108255|gb|ABW10452.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 829

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 230/449 (51%), Gaps = 17/449 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + L      A  D+LTG+ NR+ F++RL+T+       D     ++++D+D++K+IND
Sbjct: 296 EVQQLAESKVLARTDDLTGLTNRRGFIERLSTL--EGNIPDGDSFALLLLDLDRFKEIND 353

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +LV +  RI   L+  D+ ARL G+ F ++L    ++      A  +  ++
Sbjct: 354 SLGHHVGDALLVEVGSRIAGALRPGDLHARLGGDEFAVLLEH-ADADTARRVADRVLVAL 412

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +    +    + V ASIG A +      +  +L+ A++AMY AK  G   VE +R  +  
Sbjct: 413 SGAFEVGGMTLHVGASIGAALYPDHAADAQTLLQRADVAMYGAK-SGRTGVEYYRPGAEV 471

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +  + +   E L  A+   +L + Y   + L      G+EAL++W HP  G ++   F+ 
Sbjct: 472 NTLLRLDMIESLRAALGTGQLEVHYQIKVELDSGRSHGVEALVRWRHPTRGLLTPESFVP 531

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +++ + + +LE        WR+      + + +N+++ DLLD    + ++ L++
Sbjct: 532 LAEQAGLMRMLTIEVLETSLAQCRRWREAGLE--VAVAVNLSASDLLDRAFPDQVRGLLA 589

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    PS ++L  +E+ +M +  R+  +LG LR++G+ + +DD+GT  S L+YL  +P D
Sbjct: 590 QYGLLPSALELEITETTLMLDRVRTAAVLGELRELGVQIAVDDYGTGYSSLAYLQELPVD 649

Query: 880 TVKFNGSLMTGSTE-------KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +K + S +T   +       K  AI+RS + +A  +   I+ + +     + +L   GC
Sbjct: 650 MLKMDKSFVTRLEDGSGLRRAKAEAIVRSTVGLAHALGLRIVVEGVESASALDKLRNYGC 709

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961
           D  Q   +  P   + +  +L    P+V+
Sbjct: 710 DVAQGYFLGRPRPADEVTAMLSS--PVVR 736


>gi|90418105|ref|ZP_01226017.1| possible response regulator, EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337777|gb|EAS51428.1| possible response regulator, EAL, GGDEF domains [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 617

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/432 (26%), Positives = 197/432 (45%), Gaps = 11/432 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E I+  A  D LT + NR    +    +L         R   + IDID+  +IND L
Sbjct: 169 EADERIIFLANHDALTKLLNRHRMQEESDRVLATV-RATRERMAYLYIDIDEMSEINDRL 227

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD++L  +  R+  ++   D+LARL  + F ++     +   +A     +  ++  
Sbjct: 228 GQAAGDEILRVVADRLIGVVDRNDLLARLGADDFAVLQRRVASQEDVAALCKRIVDAVTE 287

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P+ +    +T + SIG A       T SE++K+AELA    K     ++  F  S     
Sbjct: 288 PVEIEGTTVTPSVSIGCALAPQDGRTHSELVKHAELAHLQHKTDKSRNLIYFEPSMDEAM 347

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  I+  +  A+EN    L Y PI+      ++G EALI+    +   IS + F+ IA
Sbjct: 348 HHRRHIEGLVRRALENQSFELFYQPIVNGDGSRLLGFEALIRMRDEEGNQISPAVFIPIA 407

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    IK I  +++    R I  W +      +F+ +N++     D +L   +++ +   
Sbjct: 408 EARGYIKTIGTWVIGEAVRQIALWPEH-----LFVSVNLSPVQFGDGDLVSIVRSALDTA 462

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               SR+++   ES+V+   +     L  L+ +GIS+ +DDFGT  S L YL   PFD +
Sbjct: 463 GVDGSRLEIEVVESLVLERSDEILAQLRELKALGISIDMDDFGTGYSSLGYLWRFPFDKL 522

Query: 882 KFNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K + S M            IL +I+ MA ++   + A+ I     +  L  +GCD +Q  
Sbjct: 523 KIDQSFMVAYENGEPSVPQILDTIVSMAHHMNMKVTAEGIETREQVDLLKSLGCDQLQGF 582

Query: 939 HVASPLGFNSIL 950
           +   P+    + 
Sbjct: 583 YFGKPMPAERVA 594


>gi|192362208|ref|YP_001983829.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190688373|gb|ACE86051.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
          Length = 638

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/434 (26%), Positives = 198/434 (45%), Gaps = 6/434 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K + + I   A  D LT +PNR         I   +     L   ++ ID+D  K IND 
Sbjct: 198 KSAKDHIEHLALHDPLTNLPNRSMAQAGFREIYARTKRQQQL-FGIIFIDLDNLKPINDS 256

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L  + +R+    +   ++ R  G+ F + L +  ++   +D ++ + + I+
Sbjct: 257 LGHQAGDHILKEVAQRLISYTRDETLVCRYGGDEFLVFLPNIQSADDASDASVDILQLIS 316

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
                   +I  T SIG A          E++K A++AMYH+K  G N    F   +S  
Sbjct: 317 QTYLYRNIDIFCTCSIGIALAPQDGDNLDELIKKADIAMYHSKDSGRNSFRFFNSSISHN 376

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             + + +   +   ++  +  L Y P I L    I G EAL++W+HP+ G IS + F+ +
Sbjct: 377 MLEHISLISGMRRGLQEQQFSLHYQPKIDLQSHRICGFEALLRWNHPEQGYISPATFIPL 436

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  +  +++    R   +W D+  MP   I INI+S       +   +   +++
Sbjct: 437 AESSGLIIQLGEWVINEACRQARAWIDE-GMPDFSIAINISSIQFKRGNIDTLVFNALTR 495

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +ES+++ + ER    L  LR  G+  ++DDFGT  S L YL     + 
Sbjct: 496 NQLPPQYLELELTESLLIEDSERLANTLANLRSEGVHFSIDDFGTGYSNLGYLKKFEVEA 555

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +     AI+R+II MA ++    IA+ +        L  +GC Y Q  
Sbjct: 556 LKIDQSFVRKMDNHSGDAAIVRAIIQMASSLGLKTIAEGVEDASTAALLRGLGCTYAQGY 615

Query: 939 HVASPLGFNSILKL 952
           + A P+        
Sbjct: 616 YWARPMPVADAKHF 629


>gi|88812711|ref|ZP_01127957.1| sensory box/GGDEF family protein [Nitrococcus mobilis Nb-231]
 gi|88789949|gb|EAR21070.1| sensory box/GGDEF family protein [Nitrococcus mobilis Nb-231]
          Length = 819

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 122/699 (17%), Positives = 264/699 (37%), Gaps = 36/699 (5%)

Query: 276 NRWHAKVGYITFSGIACIAI--------LFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           +R        +   +  +                YY         +      +    FI 
Sbjct: 102 SRLSPWAWTASLGFLYVLLATNAYMGTPYLYWWGYYAHYRIGGMLLAAYLCAMMVYLFIE 161

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITK-RLDNDIIQPALVGGLVLIVILIGFTV 386
                              I +   G+        L    +     G L++  +++    
Sbjct: 162 CLRTWCLSPRGSTRRHRARILLLGFGVAFTAAIDFLAAWGVAVYPFGYLMVAFMVVTIGY 221

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
                     +    ++       +    D V   D +          A +LG    ++ 
Sbjct: 222 AAWRYRIIAVTSRAAAEH-----VLKTLSDGVLVLDELGAIALANNRAALLLGFDHDALL 276

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   + +             +L+       G +  E  +   +     + + +  M ++ 
Sbjct: 277 GKTVDAV-------LPLRDVVLNPLRIQPPGPVHTEIELPIRNGDKRVINVTVNTMRDAG 329

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G     + +  D+T  +++ + I    + D  TG+PNR+   D+L   L LS+     R 
Sbjct: 330 GGSPLTVLVLQDVTHYREATDKIRKLVYFDQATGLPNRRHLRDKLGQALKLSSQ--GQRV 387

Query: 567 TVMVIDIDKYKKINDVL-GIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIIL 621
            V  + +  ++ + D        D +L  +  R+    +        +ARL    F I+ 
Sbjct: 388 AVCGVRLKHFRHLADHHPSAHSSDTMLNGVAARLRSFAQSVPQGKVTVARLQSYEFAILF 447

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              ++  K+      + K++  PI +  R +     +G + + +   +   ++  A  A+
Sbjct: 448 EQVDSVGKMTAELDRLHKALREPIAIGTRRLHPVLWLGVSLYPNDGNSIDALMDRAAAAV 507

Query: 682 YHAKHRGGNHVESFRV---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
             A   G      F     ++     +M+   +  A+E  +L L + PII      I   
Sbjct: 508 DQAAEAGDEQHIHFYNAEANTAALHSLMLGAKIARAIETDQLCLYFQPIINTDSGTIECA 567

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W  P  G    SEF+ +AE+  +I  ++ ++L++     + W+++       + +
Sbjct: 568 EALVRWHDPLHGLRLPSEFIPVAEQNALIIPLDQWVLKKACEHALQWQERPPSRGPKVAV 627

Query: 799 NIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           N++   L  N    + E +Q+++  +    +R++L  +E+ ++G  +     L RLR++G
Sbjct: 628 NLSGAHLSSNGGRQIAETVQSILETSGLPGNRLELEITETRMVGTDQTIVDGLRRLRELG 687

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
           + + +DDFGT  + LSYL + P D +K + S +        + A+L+SI+ +A  ++  +
Sbjct: 688 VRIAVDDFGTGYASLSYLHWFPLDKLKVDQSFVAAIGQDPTKTALLKSILLLASQLDLAV 747

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +A+ +        L R GC ++Q   +  PL  +  ++L
Sbjct: 748 VAEGVETPHQAAFLLRHGCPFMQGHLLNKPLPADDFMQL 786


>gi|172058624|ref|YP_001815084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171991145|gb|ACB62067.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 951

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/609 (21%), Positives = 265/609 (43%), Gaps = 22/609 (3%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG-- 413
                 +         +  LV +       +I  V+        +  D +R+   +    
Sbjct: 224 FEYKSIVQARHTTKGWLRILVQVGKSADQNIITWVMFDLSEQDKMEQDLKREKDKLETLC 283

Query: 414 --SGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
                 + ++ + +DR    TP+ + I  +    +H     W   +   D  NF  +++ 
Sbjct: 284 VVVDTALIEYSLKKDRYQILTPNFSKIFNVPEEQIHQNPTYWKQLVTPEDGTNFLHMMEE 343

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               +   +   +R+        W+     P+ +++G +  Y  I  D+TE K   E I 
Sbjct: 344 VKQGK--SIVTFYRIHTKKG-LKWIKDTCYPLFDTDGQVTGYQSIIKDVTEIKNRQEEIF 400

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             +  D +T +PNR++  + +  ++       N   T++ I +++   IN   G  +GD 
Sbjct: 401 KLSMMDQVTNMPNREAITETVELLI-----RQNQPFTLLSICLNRINDINQTFGFKMGDA 455

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
                T  I  LL     L  L G+ F +I        ++ +F+  + +    PI L + 
Sbjct: 456 WRAIATDTILRLLPKEAYLGALFGDDFLVIFPERMTEEQVQNFSQRLLQLSKSPIELQDY 515

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIK 708
                 SIG + +     TSS++++++  A + A+ R G+HVE +   +      +  + 
Sbjct: 516 VFQPRVSIGVSRYPEDAATSSDLIRHSGTAKFRAQKREGSHVELYASNMDIEAVRQFELL 575

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +D+   +EN+E YLVY P +     ++VG EAL++W HP WG IS  EF+ +AEE C+  
Sbjct: 576 QDMSKGIENNEFYLVYQPKVDSWTGQVVGAEALMRWTHPTWGEISPGEFIPLAEENCLYI 635

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++++ ++R + S         I + +N+  K  +  E        I +    P ++
Sbjct: 636 PLTDWLIDEVSRYLKSI-----DYAIPVSLNVPPKYFMRKEYMNVFTDAIQRHHVPPYKL 690

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  SE+ ++ + +    +   L +IG+++  DDFG   S L+YL      T+K +    
Sbjct: 691 ELEISETTILEDEDFMAEVFTSLNRIGVAVAFDDFGVGYSSLAYLQTYNVQTIKIDRKFA 750

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T   + +   AI+RSI+ +A+  E +++ + I    ++  +  + C  +Q    + P+  
Sbjct: 751 TNIHQNKKSQAIVRSILLLAQEFEMSVVIEGIETLDELFMIRELDCKIVQGFLFSRPVPA 810

Query: 947 NSILKLLKE 955
           + +  L++ 
Sbjct: 811 DDMTTLIEN 819



 Score = 47.3 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS---LAVLGS-GDIVWDWDI 423
           +       V +      T +  ++      + +  +  R     L      G  + ++ I
Sbjct: 109 RYHFSITNVPLYSGALLTGLYGIVKDLTEQKELAREYNRLKVNQLLTEQIPGLALVEYRI 168

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
              +   +  +  + GL   ++    R  +   IH  DR  F   +D  +       +Y+
Sbjct: 169 DTAKFFYSEQVPKLFGLPKKTVQQMGRVEFRNLIHEEDRPVFSQNVDR-LYQDPSFFEYK 227

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             V+A      W+ I ++   +++ +I+ ++    D++EQ K  +
Sbjct: 228 SIVQARHTTKGWLRILVQVGKSADQNIITWV--MFDLSEQDKMEQ 270



 Score = 40.3 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 11/132 (8%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+ ++ V T      +    S S     + WLP  H  +        +  +  
Sbjct: 38  PDALYVMDLTKNIVKTNDKFELLF-KGSASFLTEPKKWLPA-H--EYHEMLRYQERALKG 93

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                + E      DN+ +   I   P+ +    +    GI  D+TEQK+          
Sbjct: 94  ENVHYEIE--SIRNDNKRYHFSITNVPLYSGA-LLTGLYGIVKDLTEQKELAREYNRLKV 150

Query: 535 QDNLT----GIP 542
              LT    G+ 
Sbjct: 151 NQLLTEQIPGLA 162


>gi|329906761|ref|ZP_08274511.1| PAS sensor diguanylate cyclase and phosphodiesterase
            [Oxalobacteraceae bacterium IMCC9480]
 gi|327547163|gb|EGF32026.1| PAS sensor diguanylate cyclase and phosphodiesterase
            [Oxalobacteraceae bacterium IMCC9480]
          Length = 1245

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 227/568 (39%), Gaps = 15/568 (2%)

Query: 393  TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN- 451
                +  +    E   + +   GD V   D         P    + G  SG   G     
Sbjct: 672  LRELANQLVEQHELLRVTLQSIGDAVITTDAHSQVTWLNPVAERMTGWLSGEALGRPLTQ 731

Query: 452  WLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                ++   R      + + +   +   L     + + +     +     P+ N +GD+L
Sbjct: 732  VFHIVNEETRLPTENPVATCLAQGKIVGLANHTVLISRNGDEFGIEDSAAPIRNPSGDVL 791

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + + +D+TEQ++    +   A  D LTG+ NR  F  RL   LD +  + +    ++ 
Sbjct: 792  GVVLVFHDVTEQRRLSGEMSYRATHDALTGLVNRAEFETRLRRTLDKAHEESSEH-ALLY 850

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G +VGD +L  + + + E ++  D LARL G+ F +IL     + + 
Sbjct: 851  IDLDQFKLVNDACGHSVGDQLLQQVAKLLREAVRARDTLARLGGDEFAVILEHCP-ADQA 909

Query: 631  ADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A  +   +        ER   +  SIG     +    ++  ++ A+ + Y AK  G 
Sbjct: 910  QRVAQQICDRMEEFRFLHDERRFRIGTSIGLVPVDNRWANTAAAMQAADTSCYAAKEAGR 969

Query: 690  NHVESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
            N V ++  +          +     L  A++     L    I  L +    +  E LI+ 
Sbjct: 970  NRVHAWFDTDQAMHARHGEMQWATRLEQALDEDRFVLYAQRIEALGEGSTGLHAEVLIRL 1029

Query: 745  DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                   I    F+  AE   M   I+ ++L+R  + I +  D   +    + IN++ + 
Sbjct: 1030 LDSDGSLIQPGAFLPAAERFHMATRIDRWVLKRAMQQIQAMPDVNALD--TLCINLSGQS 1087

Query: 805  LLDNELCEGMQALISKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D          +++   +   RI L  +E+  + N   + + + ++R +G+ + LDDF
Sbjct: 1088 VGDRAFHRHAIDALTEAGSAVCERICLEITETAAVTNMADAAIFIEQVRALGVRVALDDF 1147

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            G   S   YL  +  D +K +GS +          A +R  + +A+ +    +A+ +   
Sbjct: 1148 GAGASSFGYLKTLKVDLLKIDGSFIRDVIDDPLDDAAVRCFVDVARVVGVKTVAEFVDRP 1207

Query: 922  IDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +  +  +G DY Q   +  P    ++
Sbjct: 1208 EVLARVREIGIDYAQGFLLHRPEPVENL 1235



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++ +       + +  + ERQ+  + G+G   W+W++           A I+G+   
Sbjct: 278 VGSVEDITERLQSRRALDEERERQAAIIQGTGAGTWEWNVQTGETRFNDRWAEIVGVTLD 337

Query: 444 SMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +    I+ W  + H +D      +L S         + E R+R     + W++ R + +
Sbjct: 338 ELAPTTIQTWADFAHPDDVARSNALLQSHFTGETPYYECEARMRHRSGHWVWVLARGKVL 397

Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             N+ G      G   DIT +K   + +  +        + NR   L ++
Sbjct: 398 TRNAEGQPEWMFGTHLDITVRKVQEDRLRKSEE------LLNRTGALAQV 441



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 7/170 (4%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
            P  +       + +        L +   ++   +   R       S   V+  D     
Sbjct: 136 VPRQLSEQQREALRLLSIAAVQALESRRMARAFAASETRFRTLSESSPLGVFATDAAGAC 195

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             T      I GL+     G    W   +H +D+             ++     EFR+  
Sbjct: 196 TYTNARWQAIYGLSEAEALG--DGWRHVLHPDDKTAVFAHWQDSAALKQE-FDMEFRICR 252

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE----QKKSLEGILCNA 533
            D     +    R + + +  +  Y+G   DITE    ++   E     A
Sbjct: 253 HDGTVRHVRSVARALLDGDDGVTGYVGSVEDITERLQSRRALDEERERQA 302



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 1/149 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F   Q++    +    + +  +  +LA    G  VW+ ++    +T    + ++ GL+ G
Sbjct: 535 FGAFQNITQRVHDRLALEAAQQSVTLATEAGGIGVWELNVQTGVLTCDALMYSLYGLSEG 594

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                   W  ++H  DR        S +       + EFRV  +D   H++        
Sbjct: 595 LGTDVYELWARHLHPADRSRAELEFKSSLK-SGADFRSEFRVIWSDGSVHFLCSAGSLTR 653

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN 532
           ++ G +LR +G+  D+T  ++    ++  
Sbjct: 654 DAAGQVLRMVGVNWDVTPLRELANQLVEQ 682



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 5/143 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +    E  +     +    W+ DI    +  +     I GL  G     +   + + 
Sbjct: 422 EDRLRKSEELLNRTGALAQVGGWEVDIASGSIHWSEQTCRIHGLEPG-YQPQLAEAINFY 480

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               R      +   +         E  +        W+              +R  G  
Sbjct: 481 APEARPIIEAAVAQSMAGGTN-WDLELPLIQKGGCRIWVRSVGYAEFEGE-KPVRLFGAF 538

Query: 517 NDITEQKKSLEGILCNAFQDNLT 539
            +IT++    + +   A Q ++T
Sbjct: 539 QNITQRVH--DRLALEAAQQSVT 559


>gi|220936332|ref|YP_002515231.1| sensory box protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997642|gb|ACL74244.1| sensory box protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 627

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/439 (23%), Positives = 207/439 (47%), Gaps = 8/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            + +  + +   A  D LTG+PNR     RL   L  S   + L   VMV+D+D +K++N
Sbjct: 177 HRLRLEQELETRALYDALTGLPNRSKLFARLEHALYQSRQAERLT-AVMVMDLDGFKQVN 235

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L  +  R+ ++++  D++ARL G+ F +++ +  +  +I   A  +  +
Sbjct: 236 DRLGHQVGDRLLQDVAGRLRDVVRRSDMVARLGGDEFVVLVENCASVAEIEHVAGRLVTA 295

Query: 641 IAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RV 697
           +   + +     + +TAS+G   +         +L +A+ AMY  K  GG     F  ++
Sbjct: 296 LNFGVGMGGNLALRITASVGITVYPFDDAAPEALLSHADAAMYEVKKTGGQRYGYFDAQL 355

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                DR  I+ ++   +E  E  LV+ P++       VG EAL++W HP+ G +   +F
Sbjct: 356 HRRIHDRQHIELEVRRGLEEGEFRLVFQPVVDAQTGRAVGAEALVRWAHPEQGLLGPGQF 415

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   +   +   +  ++L      +  W  +     +++ +N+   +L  +     ++ +
Sbjct: 416 LPQIDGTAVSARLGAWVLRHAVATLADWERRGLG--LWLSVNVDGHELEGHGFASRLREM 473

Query: 818 ISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           + +     PSR+K+   ES V+ + ++   L+  L ++G+   LDDFGT  + ++YL  +
Sbjct: 474 LREHPDCDPSRLKIEIVESTVINDFDKVGRLIEELAELGVRFVLDDFGTGYASIAYLRRL 533

Query: 877 PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
               +K +   +         A++ S+I +A  +    +A+ +        L  MGC  +
Sbjct: 534 HIQAIKIDRGFVAAMEDPGERALVGSLIQIASTLFVECVAEGVETAEQRATLLGMGCRLL 593

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  ++A P+  +  L  L 
Sbjct: 594 QGYYLARPMSADDFLDWLA 612


>gi|323499697|ref|ZP_08104665.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323315298|gb|EGA68341.1| sensory box/GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 1049

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/610 (20%), Positives = 233/610 (38%), Gaps = 25/610 (4%)

Query: 369  PALVGGLVLIVIL----IGFTVIQHVLATGYF------SQGIFSDGERQSLAVLGSGDIV 418
             A +G LVL V L     G    +++L            + ++      S        ++
Sbjct: 446  HAELGALVLEVSLKPIPSGIASARYLLEARDITSRKITEERLYQREANLSHYYDQQPVMM 505

Query: 419  WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
               D              +LG     + G       Y+H +     R +L       +G 
Sbjct: 506  VTLDDQNRIQQVNHFAEQLLGYTPDQILGHRLREF-YLHEDALIP-RQVLLQPKQVMKGV 563

Query: 479  LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + E   R AD +  W+   IRP+     +    + +  DITE  K  E +   A  D L
Sbjct: 564  WRREIEYRHADGRVLWIRENIRPLV----ESGHLLIVGEDITETHKLSEQLAYQARHDML 619

Query: 539  TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
            TG  +R  F   L   L    +       ++ +D+D+ K +ND  G   GD  +      
Sbjct: 620  TGAFSRNYFEKELDKALKEVESFTRTH-AMLYLDLDQLKVLNDTAGHEAGDAAIQFCASM 678

Query: 599  IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
            + E+L +  +LAR+ G+ F I+L             + +      P    +  +++  SI
Sbjct: 679  LEEVLPYNTVLARMGGDEFAILLKDCTEFDAKKLAKMIIDTLSEQPFIWEDIRLSLNCSI 738

Query: 659  GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLA 714
            G      +  +   +   A+ A + AK  G N    + +      R   + +    +  A
Sbjct: 739  GIRLIDHTASSPQMVHAQADTACHVAKEEGRNRFSLYCLDDKELRRREQEMESVNLVHNA 798

Query: 715  VENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + N  + L    II L D+E  +  E L++  + K   IS   FM  +E   +   I+  
Sbjct: 799  LANQRIELFAQRIISLEDDEEGMHFEILVRIRNAKGEYISPGIFMPASERYNIAHLIDKQ 858

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            ++ +         +  +     + IN++   + + E  + + A + ++    S++ L  +
Sbjct: 859  VVSQTLDWFADHPEALDKLS-QVAINLSGHSMGNKEFTQFLLARLEESPVPCSKVCLEIT 917

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
            E+  M N  ++     +L+ +G  + LDDFG+  S   YL  +P D VK +G  +     
Sbjct: 918  ETAAMSNMNQAIEFFSQLKSLGCVIALDDFGSGLSSFGYLKKLPVDIVKIDGIFVRDIDV 977

Query: 894  K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  ++RSI  +AK +    +A+ +     I +L  +G DY Q   +  P+    ++ 
Sbjct: 978  NEMDHLMVRSINDLAKQMGKRTVAEFVENTRIIDQLMELGVDYAQGYIIGKPMPLQQLVS 1037

Query: 952  LLKERFPLVK 961
             L     +  
Sbjct: 1038 DLMSENKVST 1047


>gi|312135911|ref|YP_004003249.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           owensensis OL]
 gi|311775962|gb|ADQ05449.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           owensensis OL]
          Length = 569

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 128/545 (23%), Positives = 237/545 (43%), Gaps = 25/545 (4%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
             W +DI    +  +          + +           +  N+ D    +    +  R+
Sbjct: 33  GFWLYDIKEKMLYLSDGSE----YLAAANSNLAFLLQKIMAENEFDYLLKVAGESIQSRQ 88

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK----KSLEGILCN 532
                  RV+  DN   W+ I    +       L+  G   D+T       +    +   
Sbjct: 89  NGFS--LRVKLKDN--RWIFICATILCEKE-KPLKIAGTFEDVTPHVACDLRLSRYVELI 143

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D++TG+PNR    + L   L  S     +   +M I++  +  IN++ G  VGD+ L
Sbjct: 144 AYYDDVTGLPNRNYLREILNERLKGSKNSGGI-FWLMFIEVSNFSYINELFGHTVGDEFL 202

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            S+   I +LL      +R  G+ F I+  S +    +A  A  + +  + P N++ + +
Sbjct: 203 KSIALEIKKLLPRDWTFSRFGGDEFVILTTSVH-KGSVARIAENLIERFSRPWNVMGKRL 261

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG------NHVESFRVSSFRSDRVM 706
               +IG + +         +LKNAE+A+  AK RG           S  +S     RV 
Sbjct: 262 YANINIGISGYPQDGELEDVLLKNAEIALTTAKKRGSDIGKSLYEFYSKSMSEEILKRVE 321

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+ ++   ++  + +LVY P I      +VG EAL++W+  + G ++  +F+ IAEE  +
Sbjct: 322 IESEISRGIQKKQFFLVYQPKISSDGSTVVGFEALLRWNS-QKGILTPDKFIQIAEESGL 380

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  +N  +L+ + +DI  +  +     + + IN++ K+     +   +   + K   +P 
Sbjct: 381 VYDLNRLVLDIVCKDIK-FIKENAFKNVSVAINLSGKEFAMYNMIGVLNEHLKKHNIAPE 439

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I++  +E V++ N E SR +   L K GI +++DDFGT  S L  L  +P   +K +  
Sbjct: 440 DIEIEVTERVILNNLELSRQVFDSLNKKGIKISIDDFGTGYSSLELLLQLPIYALKIDKK 499

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           I++SII MAK +    IA+ +  +   + L  +GCD  Q  + + P+
Sbjct: 500 FVDKIELFSNEYIIVKSIINMAKEMRLKTIAEGVERKEQYEILKALGCDQFQGYYFSKPM 559

Query: 945 GFNSI 949
               I
Sbjct: 560 RVEEI 564


>gi|261250906|ref|ZP_05943480.1| predicted signal transduction protein [Vibrio orientalis CIP
           102891]
 gi|260937779|gb|EEX93767.1| predicted signal transduction protein [Vibrio orientalis CIP
           102891]
          Length = 775

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 214/436 (49%), Gaps = 7/436 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A +DNLT + NR +    +   L L ++  +   +++ ID+D++K IND +G   GD 
Sbjct: 340 QQAVRDNLTNLSNRTALSSEVDKQLSLLSSGQSKGFSILFIDLDRFKVINDSMGHLHGDK 399

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R+ +  +  D+  R  G+ F I L    +   ++D      K ++ P N+  +
Sbjct: 400 LLQKVASRLTQHCRSNDMSFRFGGDEFVICLPGLTSKDALSDICQRYSKVLSQPYNIDGQ 459

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708
              +  SIG +  T+   T + +L+ A+ AMY AK      V  F          R  ++
Sbjct: 460 SCHIGTSIGISVVTNPTQTLASILREADTAMYKAKTSTHEKVVFFHEQMFNQAKKRFTLE 519

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+   +L LVY PI   MD+ +VG E+L++W HP++G IS  +F+ IAEE  +I 
Sbjct: 520 QELTNALNLKQLSLVYQPIYSTMDDRVVGFESLLRWHHPEFGPISPVDFVPIAEETGLIV 579

Query: 769 AINLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            I  ++     + +   W  + +     I IN+++K      +   +  L+++  + P  
Sbjct: 580 KIGDWIASECCKTLQRLWLKKQDESVPRININVSAKQFESEHIYHTLCRLLNEYDFPPHL 639

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +ES+++ + E S   L R++ +G+ L LDDFGT  S LS L   P D +K + S 
Sbjct: 640 IGIEITESMLLSD-ECSAHQLQRIKDLGVVLYLDDFGTGYSSLSVLNDYPVDIIKVDRSF 698

Query: 888 MTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           +           ++ ++II MA  I+  ++A+ +     +  LT+  C+YIQ    + PL
Sbjct: 699 VNRIAMGESNADSLCQAIINMAHIIDLEVVAEGVETSEQLAVLTQHKCNYIQGYLKSKPL 758

Query: 945 GFNSILKLLKERFPLV 960
               +  +L+    L 
Sbjct: 759 SVCCLENVLENEAKLT 774


>gi|86144307|ref|ZP_01062639.1| Predicted signal transduction protein [Vibrio sp. MED222]
 gi|85837206|gb|EAQ55318.1| Predicted signal transduction protein [Vibrio sp. MED222]
          Length = 767

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 101/436 (23%), Positives = 210/436 (48%), Gaps = 10/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++   ++  A  D LT +PNR      +   ++    D++   +++ IDID +K +ND
Sbjct: 325 EQRTRSQLIYQANHDPLTSLPNRSYMRKNIGKWIE----DESEPFSLLFIDIDNFKCVND 380

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +  R+        +L R S + F + L + N+  +I   +  + + +
Sbjct: 381 THGHDFGDKVLKQIALRLMRFRSRVSLLVRESSDEF-LFLTTLNSESEIKRLSERIIEVL 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
           + P  +   +  ++ S+G A +         +L++A+++MY AK +     + +  +   
Sbjct: 440 SQPYEVESAQFLLSCSVGIARFPDHGRDLDSLLRSADISMYKAKQQQNSYSIFTTEMQDA 499

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ +++ L +A++   L++V+ P++R  DE   G+EAL++W   + G +    F+ I
Sbjct: 500 HLYKMRVEQRLRIAIDKQALFMVFQPLVR-ADESTHGVEALVRWVDDELGFVPPDVFIPI 558

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +++ +  F++E     I           I + INI+ +        E +   + K
Sbjct: 559 AESTGLMQKLGTFIIESSVMQIAHLHR-TIEQKIGLSINISVRQFSHKSFSEHLFTTLEK 617

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +SPS + L  +ES+ + +    + L   L++  I ++LDDFGT  S LS L  +P D 
Sbjct: 618 YQFSPSCLTLEITESLFIEDVAIVKPLFEALKENDIKISLDDFGTGYSSLSMLKALPIDE 677

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      + +  ++++II + KN    ++A+ +        L   GCD +Q  
Sbjct: 678 LKIDKSFIENIAVDQQSLTMVQNIIAIGKNFGMVVLAEGVESNEHFAILKACGCDLMQGY 737

Query: 939 HVASPLGFNSILKLLK 954
           + + P+ ++ + K L 
Sbjct: 738 YFSRPIPYDELCKYLT 753


>gi|114320268|ref|YP_741951.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226662|gb|ABI56461.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 942

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 122/650 (18%), Positives = 248/650 (38%), Gaps = 28/650 (4%)

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI-TKRLDNDI 366
                +    +       I++  M    R   ++P             + +   RL ++I
Sbjct: 309 LFFMGLAGWLVAEAILLLILWRPMLRLRRLAQVLPGLAEGGFQRARTAIPVGRPRLADEI 368

Query: 367 -IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            +      GL   +  +   V +         + +  + +  S  +  +  ++   D   
Sbjct: 369 DLLETTTLGLADQLEALEREVRRRREQVVSQLRALGRERDFVSSLLDTARVLIVSQDAEG 428

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                       LG     + G              D     L           + E  +
Sbjct: 429 RITLINDYAQAALGRREDELVGAHF-----------DAVFPGLVPIGRNSGLPREEERPL 477

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            +       +     P++   G     I +  DITE+K +   ++  A +D LT + NR+
Sbjct: 478 HSPGRGERIVAWYHAPLAAEEGRPAGRISVGLDITERKAAEARLIWLAQRDPLTELYNRR 537

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F + L   L        +   V+++D+D+++ +N++ G   GD++L  +   + + L+ 
Sbjct: 538 YFQEALDRALAK-----GVHGAVLLMDLDQFRDVNELSGHHAGDELLRLVAGTLLDHLEH 592

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             ++ARL G+ F ++L   +    ++     ++    + +++ ER   V+ASIG   +  
Sbjct: 593 RGVIARLGGDEFALLLEETDADAAVSVAQYMVKLLEDLGLSIGERRHRVSASIGIVLFPE 652

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELY 721
              T ++++ +A++AMY AK  G                +       E L  A++     
Sbjct: 653 HGETPTDLMASADVAMYKAKETGVQRWHLLHALDHAKGELQERVYWVEQLHQALQGDAFE 712

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L+  PI+RL D  +   E L++   P    +    F+  AE    I  ++ ++L    + 
Sbjct: 713 LMVQPIVRLRDRSVRHYEVLVRMRDPSGELLLPGRFIPFAEHSGQIVQLDRWVLRAALKV 772

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +   + Q       + +N++ + L D+ L   +   +  +   P  + L  +E+  + + 
Sbjct: 773 LRRVQSQGIG----LAVNLSGQSLHDDGLTTFLADELRASGADPEHLILEITETAAVTDF 828

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
             +R +L  +R +G    LDDFG   S   YLG +P D +K +GS +      E    I+
Sbjct: 829 STARGVLEGIRALGCQTALDDFGVGFSSFHYLGQLPVDYIKIDGSFIRSLPHNEDSRIIV 888

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           R+I  +A       IA+ +  E+ +  L   G  Y Q  H+  P+     
Sbjct: 889 RAIADIAAGFGKAAIAEFVDQEVLVPMLRDYGIAYGQGYHLGRPVPVEEA 938


>gi|160938009|ref|ZP_02085366.1| hypothetical protein CLOBOL_02902 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439003|gb|EDP16758.1| hypothetical protein CLOBOL_02902 [Clostridium bolteae ATCC
           BAA-613]
          Length = 565

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/553 (20%), Positives = 236/553 (42%), Gaps = 26/553 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D V+  ++  D    + ++     L    + G +  W   IH  DR  +  
Sbjct: 22  YDAIVKSTDDYVYIVNMKTDTSLISENMVRDFELPGRIVPGLVPLWGSLIHERDRARYDE 81

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++  +         E++VR   N++ W++ R     +  G    + GI  +++ + K  
Sbjct: 82  SIEQMLSGLTDVHDVEYQVRNRKNEYVWVVCRGVLQRDQQGSPAMFAGIVTNLSHRGKV- 140

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D +TG+     F+ +    +      +     ++++ +D +  IN++ G  
Sbjct: 141 ---------DYVTGL-----FMQQECERVVEECLSEGQSGGILLLGLDDFSGINNLKGHI 186

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL    + +  LL     + R  G++F I+  +  +  +IA     +         
Sbjct: 187 YGDSVLRQFAQNVQRLLPDYASIYRHDGDQFVIVCQN-TSYGEIALLYEVINSYSDCRHE 245

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +   +   T S G A +     + +E+L  A  A+  +KH+G N    +      +    
Sbjct: 246 VDGIQYYCTVSGGIAVFCQDGSSYTELLTCASGALETSKHKGKNKCTLYDEELIHTRLRS 305

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++  + L  +V N      +VY PI+R  D +I   EAL++W     G++S  EF+ + E
Sbjct: 306 LEIMDRLRSSVMNHMEGFSVVYQPIVRSSDTKIAEAEALLRWSCKDMGSVSPLEFIPLLE 365

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  ++LE+  R    W      P   + +N +   +LD +  + ++ +I++  
Sbjct: 366 SSGLIIPVGKWVLEQSVRQCCKWLACV--PDFVMNVNCSYLQMLDEDFVQSVKEIINRYR 423

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS I L  +ES  + + +R      RLR + I L +DDFGT  S LS L   P D VK
Sbjct: 424 LDPSHIVLELTESRFVTDQDRLNDTFMRLRSLNIRLAMDDFGTGYSSLSCLSCTPADIVK 483

Query: 883 FNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +   + G  ++      + + S+I +  ++  ++ A+ +  + +++ + R+  D +Q  
Sbjct: 484 IDREFIRGICDQSHSFNRSFIGSVINLCHSVGISVCAEGVEEKDELETVLRLKADSVQGF 543

Query: 939 HVASPLGFNSILK 951
           + + P+  +   K
Sbjct: 544 YFSKPVTPDEFEK 556


>gi|332994348|gb|AEF04403.1| diguanylate cyclase/phosphodiesterase [Alteromonas sp. SN2]
          Length = 538

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 210/449 (46%), Gaps = 15/449 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  +   + I   AF D LTG+PNR SF   L  +L  +  D   R  ++ ID+D +K++
Sbjct: 92  TIMQLHADDIRQMAFYDTLTGLPNRWSFKTNLERLLARAGKDKQ-RIGLLYIDLDNFKQV 150

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPD--------ILARLSGNRFGIILISENNSLKIA 631
           ND  G   GD +L+  + R+ E ++  D         LARL+G+ F ++L +    L  +
Sbjct: 151 NDQYGHEAGDRLLLEFSERLWEEIRPTDQLLKPEAESLARLAGDEFVVLLPNIKEPLDAS 210

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +         + +    + ASIG A +       S +L +A+ AMY AK  G N 
Sbjct: 211 VVATRILNIFDGGFEVDDVTHMIYASIGIAVYPDDATEPSMLLHHADAAMYDAKDNGRNC 270

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F      +      I+  L  A+      LVY PI    D  I  +E L++   P+ 
Sbjct: 271 FRFFTQKIADTMHQRQQIERGLRQALSEEHFSLVYMPIFDCKDNTIAAVEVLLRCQSPEL 330

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
                  F+ +AE    IK I+L++L+   + ++  + Q +     + INI+  +L +  
Sbjct: 331 EGFGPDHFIPVAEATGYIKEIDLWVLDNALQALVILQ-QKHHFKGQMCINISGVELHNEA 389

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               ++ L+ +   +P  ++L  +E+  + +       L  L ++G+SL LDDFGT  + 
Sbjct: 390 FPVQLKDLLERYKITPDSVELEITETAFVADDAIGLATLKALNELGVSLALDDFGTGYTA 449

Query: 870 LSYLGYIPFDTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            S L + P D +K + S +       E R  ++  I  +AK  +  +IA+ +  E  +  
Sbjct: 450 FSQLIHYPADCLKIDRSFVNDLFSEREARSKMVMVIQSLAKLYDLRVIAEGVETEAQMNY 509

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L   GCD+ Q  +++ PL +++++KLL E
Sbjct: 510 LRENGCDWAQGYYLSRPLPWDNLVKLLSE 538


>gi|304312217|ref|YP_003811815.1| hypothetical protein HDN1F_25890 [gamma proteobacterium HdN1]
 gi|301797950|emb|CBL46172.1| Hypothetical protein HDN1F_25890 [gamma proteobacterium HdN1]
          Length = 958

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/569 (20%), Positives = 231/569 (40%), Gaps = 10/569 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           VL     +   F   E   + +   GD V   D   +     P   T+ G +S   HG  
Sbjct: 387 VLQNLKRATRFFYQRELAEVTLHSIGDAVITTDAQGNIEYLNPVAETLTGWSSREAHGKP 446

Query: 450 RNWLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            + +  +      +F   + + +   R   L    ++   D     +     P+   +  
Sbjct: 447 ADEVFRVENTLHSSFVYPVATCLREGRVVGLTAGHKLITRDGNAIAIEDSCAPIRTEDAS 506

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  + +       +     +  +A +D+LTG+ NR+ F  +L  +L       N    +
Sbjct: 507 VVGCVIVFYAAESARNGDYILSYHATRDSLTGLVNRREFERQLNELLAR-QRSPNEHHVL 565

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             ID+D++K +ND  G A GD +L  +T  + + ++  D LARL G+ F ++L       
Sbjct: 566 CYIDLDQFKVVNDTCGHAAGDRMLGQVTFLLRKRIRDSDTLARLGGDEFALLLRGCPLER 625

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            ++       +      N  ER    + S+G      S  ++SE+L  A+ A Y AK +G
Sbjct: 626 AVSIVEELRSELRGYRFNYDERAFETSMSVGIVPILPSSSSASELLIEADSACYAAKEKG 685

Query: 689 GNHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            N  + ++        R  ++     +  A+  ++  L   P+  L +     +E L++ 
Sbjct: 686 RNRCQVYQHDDLELMQRKGQMQWVSRINDALRGNQFILFCQPLALLNESCPPRVEILLRM 745

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I    F+  AE   ++  I+ ++L  +   + + +++         IN++   
Sbjct: 746 RGRDNEIIPPMAFIPAAERYNLMPNIDRWVLNELFATLHAHKNELADTVF--NINLSGLT 803

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +  L   + AL+  +     +     +E+  + + E  + L   L + G S +LDDFG
Sbjct: 804 LSEKSLPSEILALLEASNLPAHQFCFEITETAAINSLENLQKLTNVLIEQGASFSLDDFG 863

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S  +YL  +P   +K +G  +    +     A++RS++ +A  +   + A+ +  E 
Sbjct: 864 SGLSSFNYLKTLPVQLIKIDGGFVRDMLKDALDQALVRSVVDIASVLGIQVCAEYVEDEA 923

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++ L  +  DY Q   +  P    + L+
Sbjct: 924 TLEHLKTLRVDYAQGFAIGHPWPLKNFLE 952


>gi|188990916|ref|YP_001902926.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732676|emb|CAP50870.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 788

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/667 (17%), Positives = 243/667 (36%), Gaps = 22/667 (3%)

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351
            +     +  +       ++ +   +     T       ++     + L+   +      
Sbjct: 128 YLGSAIALWKHTDGDILHLSLLADRAASAQATGTPDARALQSLRAELHLLDGRMRRDAAQ 187

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               +    R+ +D++    +  L+L++          VLA       + S   R   A 
Sbjct: 188 FLTLLTRCARMLHDVMVTCSLATLLLVLSTC-------VLAIRRTRDYLMSHEGRFRTAF 240

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +   +  +D+    +     +A IL     ++          +H +D           
Sbjct: 241 QHAALGMVKFDLSGRVLDANASLANILQYPPEAL--QACTLAEVMHPDD---IVLDSRGL 295

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           + + R     E R   +D    W       +     +    + +  D+++  +  + +  
Sbjct: 296 IDWPRLMQAGELRFLRSDGGVLWGRWSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAY 355

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +A  D LTG+ NR+    RL  ++D       L   +  +D+D +K +ND  G AVGD  
Sbjct: 356 HARHDALTGLINRREIERRLQRLID-PPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKF 414

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LER 650
           L      I   L+  D L RL G+ F I+L++  +          M   +  P +    R
Sbjct: 415 LCHFADVITMQLRPGDWLGRLGGDEFAILLVN-TDLAHAHTLLERMHGVLGQPWSHQGGR 473

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---- 706
            +T + S G           + ++  A+LA + AK  G N + SF  +     R      
Sbjct: 474 PLTPSCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGG 533

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               +  A+    L L    I  L D   V  E L++        +S  EF+   E   +
Sbjct: 534 WISAVQQAIAEDRLLLYAQKIQVLSDPGRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGL 593

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            + ++  +LE +   + +         +   +N++++ +   +  + + AL  +     +
Sbjct: 594 GRMVDAHVLETLCAQLSANPAHVASLDL-CHVNLSAQSIAQRDFLDFVCALFERYPALVA 652

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ L  +E+ V+G+ E ++  +  +R  G  + LDDFG+  +   YL     D +K +  
Sbjct: 653 KLCLEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCG 712

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +          A + SI  +   +   ++A+ +  E DI  L   G   +Q   +  P 
Sbjct: 713 FVRNYAHDAVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPC 772

Query: 945 GFNSILK 951
             + +L 
Sbjct: 773 PLDDLLH 779


>gi|269966473|ref|ZP_06180557.1| hypothetical protein VMC_19870 [Vibrio alginolyticus 40B]
 gi|269828930|gb|EEZ83180.1| hypothetical protein VMC_19870 [Vibrio alginolyticus 40B]
          Length = 718

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 103/452 (22%), Positives = 218/452 (48%), Gaps = 18/452 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A+ D LT +PNR+  L  + T +       +    V+ ID+D +K IND  
Sbjct: 267 RYTSRVEFMAYHDILTSLPNREKLLIDIQTQITD---HKSPSLAVVFIDLDDFKHINDNY 323

Query: 584 GIAVGDDVLVSLTRRIGELLKFP--------DILARLSGNRFGIILISENNSLKIADFAI 635
           G  +GD +L  L   +   L            I++R+  + F +     +++ +  + A 
Sbjct: 324 GHNIGDKLLGHLASELQGRLPSYFKPLYRLSTIVSRVGADEFVLAFP-CSDNHEAREKAN 382

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  P +L E +I +TAS+G A +      +  +L+ + LA   +K RG + +  +
Sbjct: 383 DIHRQLLSPFSLEENDIQITASLGIAVYPEFGSNAESLLQLSSLAAQESKRRGKDIMTIY 442

Query: 696 RVSSFRSDRVMI--KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
             +   + +  +  + +L  +V + S+  L Y P   L    ++G+EAL++W+HP+ G I
Sbjct: 443 DSTFDETIKQRLYIERELRRSVRDLSQFELWYQPQFDLKTYRLIGVEALVRWNHPEKGYI 502

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ IAE+  +I  +   ++E        W +        I +N++ + +   +L +
Sbjct: 503 SPESFIPIAEQSDLILELGEHIIETAVAQRAMWAEHFG-TDFHIALNLSPRQIYRQDLSQ 561

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                + +   +P  I +  +ES+ + + E+++ +L +L+ IG+ + LDDFGT  S L+Y
Sbjct: 562 LFSKYLRRHDVAPQTIHVEVTESLFIDDTEKAQYVLKKLQSIGVEVWLDDFGTGYSALAY 621

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++ FD +K + S +    +     +++R+I+ MA N+   ++A+ +  +  +  +  +
Sbjct: 622 LQHMAFDGLKIDRSFIAQIRKSDQDDSLVRAIVSMAHNLRMKVVAEGVETQTQLTRMESL 681

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            CD +Q   +  P+    ++    +R    ++
Sbjct: 682 HCDVVQGFFLGRPVPAEELIAFEYQRGSGAQS 713


>gi|300697751|ref|YP_003748412.1| diguanylate cyclase [Ralstonia solanacearum CFBP2957]
 gi|299074475|emb|CBJ54025.1| putative signal transduction eal-ggdef domains transmembrane
           protein, Diguanylate cyclase/phosphodiesterase precursor
           [Ralstonia solanacearum CFBP2957]
          Length = 695

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 205/448 (45%), Gaps = 13/448 (2%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +     +T Q    E        D LTG+P        L   +  S+        +  
Sbjct: 250 HLVASLERVTHQSTPPEP------HDALTGLPTHPQLRQALDDAIVSSSR-GGRPFALFH 302

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +++D   +IN+  G A GD VL  +  R+ + ++  D +ARL  + FG+++         
Sbjct: 303 LNLDGLGRINEQYGRATGDRVLQIVAERLRQTMRDEDTVARLGSDEFGLLVEGLPLPEAA 362

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A     +   +   + +  R + VTASIG A    +  T+  +L +A+ AM+  K   GN
Sbjct: 363 APIGDKLLFRLRESVEVDGRRLRVTASIGVAIHPYNGATADALLAHADAAMFECKQAAGN 422

Query: 691 HVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               +    ++     + I+  L  A  N +L + Y P        + G EAL++W+HP+
Sbjct: 423 AYRFYEPRLNTTAHRVLQIQRALSHAALNGQLSVYYQPKFDAHTRSMTGAEALLRWNHPE 482

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S +EF+ +AE    I  +  +++E + R I+ W D A M P+ I +N++ +     
Sbjct: 483 LGPVSPAEFLPLAERTGTIIELGDWVVEEVCRQIMYW-DTAGMTPLKIAVNLSPRQFQQP 541

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + +  ++ +   +  R+    +E+  M +  +S   + +++ +G+ + +DDFGT  S
Sbjct: 542 DLVQRLSQILHRYQVAADRLMFEITETAAMRDAGQSITAIRQIQSLGVEVAIDDFGTGYS 601

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            LSYL       +K + + +    +      AI+R+I  MA +++ T++A+ +     ++
Sbjct: 602 SLSYLQRFRAQQIKIDRAFIAALDDNPSEAYAIIRAICAMAHSLDMTVVAEGVETGAQMQ 661

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L  + CD IQ   +  PL       L+
Sbjct: 662 ALVNLHCDQIQGYLLGRPLPAREFQTLI 689


>gi|126463806|ref|YP_001044919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodobacter sphaeroides ATCC 17029]
 gi|126105617|gb|ABN78147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 878

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 122/568 (21%), Positives = 239/568 (42%), Gaps = 21/568 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + + +     +  +  S   +   +     V    +   +L L        +  
Sbjct: 314 DRKVLERELATRNAFLTAVLQTSVSAIVALNAEGGIVYANDEARRLLVLQPHRGGLRMEA 373

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDI 509
            L  +  + R      + S +    G   ++ R  +R  D QF  + I   P+  +  D 
Sbjct: 374 VLETL--DGRPLPEADMPSALVRATGAPLHDLRYAIRRPDGQFGILSINAAPLPQAADD- 430

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            R +    DIT  + S E +   A +D LTG+ NR++  D + T L  +A        ++
Sbjct: 431 ARIVISVTDITHAEASAERLRRQAAEDPLTGLANRRALADAVETRLTEAA-----PFALV 485

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K +ND+     GD VL     R+  +     ++AR+ G+ F ++     ++  
Sbjct: 486 MLDLDNFKAVNDLQRHDTGDAVLRIAADRLRAVAGADCLVARMGGDEFMVLAPG-TDAAS 544

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A A+R +I+ PI +  + + + AS G A       + + ++  A++A++ AK  G 
Sbjct: 545 APRLAEALRAAISAPIEVGRQPVHLAASAGIALHPDHGTSMALLMTGADIALHAAKRAGR 604

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N       + F ++     I + L   VE   L LV+ P  R       G EAL++W  P
Sbjct: 605 NRSVLLSQAQFAAEARRSAITQALAADVEAD-LRLVFQPQFR-ACGAFDGAEALLRWTDP 662

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I  +EF+ IAEE  +I+ I+  +    AR +  W  +       + +N +++    
Sbjct: 663 RLGEIGPAEFIPIAEEAGLIQRIDAHVAVLAARQLGLWARRGWRH--RLAVNASAQTFAR 720

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E +   +++    P ++ +  +E+ +      +   +  LR+ G+ + +DDFGT  
Sbjct: 721 AGFAEELLQHLAEEDVCPQQLVVELTETSLATLSSVADHNIATLRRAGVGIAIDDFGTGY 780

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           + LSYL  I    +K +   + G           ++++I+ +A  +   + A+ +  E  
Sbjct: 781 ASLSYLHRIEATEIKIDRGFVAGLETAERRDSKPLIQAILSLAHALGLAVTAEGVETERQ 840

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
              L+  GCD +Q   +  PL   +   
Sbjct: 841 RSWLSAEGCDRLQGYLLGRPLPVEAFEA 868



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 25/226 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               G    VL+           +GL +    + +D   +         +   L      
Sbjct: 123 MARHGIRALVLMPLTDGTALTGVVGLSLFRARRPVDPAEMALLHSIAEAMGAALARRDAE 182

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +  +A    ++ +  + ER +       ++V   D+ +  V          G +  ++ G
Sbjct: 183 RRAVAARSAARDVARNLERLARVTELMTNLVIVTDVEQQIVWVNRAFERQTGHSLEAIRG 242

Query: 448 PIRNWLPYI-----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             RN+   +                + +        + Y      A  Q +W+     P+
Sbjct: 243 --RNFAEVVRGPGTDPGVCAAVAEAIRTCSSCEGETINY-----TAAGQPYWIRFNAHPL 295

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           S+++G  + +  +   IT++K                 +  R +FL
Sbjct: 296 SDADGRYVGHASVETVITDRKVLERE------------LATRNAFL 329


>gi|126665524|ref|ZP_01736506.1| hypothetical protein MELB17_23065 [Marinobacter sp. ELB17]
 gi|126630152|gb|EBA00768.1| hypothetical protein MELB17_23065 [Marinobacter sp. ELB17]
          Length = 712

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 119/428 (27%), Positives = 211/428 (49%), Gaps = 9/428 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K+ + +      D LTG+ NR  F ++L   L+ S  +      V+V+ ++ ++ +N 
Sbjct: 279 LRKTEQELEIRTLYDQLTGLANRNLFEEQLDRHLNRSDLEPAGSEAVLVLGLNDFQALNG 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFAIAMRK 639
           + G   GD VL  + RRI   +     +ARL G+ FG+++       +  +     A+ +
Sbjct: 339 LAGHQTGDRVLQEIARRIASHVVDHGHVARLGGDVFGLLVAAGHRGPADSLEASISAVIE 398

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +   P+ + ++      S G A        +  +L +AE+AM+ AK      V+ F    
Sbjct: 399 ACEAPVRIGQKTYECEVSAGVAITPLDGSDARTLLSHAEIAMHRAKKTPSERVQFFASEF 458

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  +  DL LAV+N +  L Y P+        VG EAL++W HP  G +S +EF
Sbjct: 459 GDQVRRRQEMVRDLKLAVQNHQFQLYYQPLFD-RLRRCVGYEALLRWHHPVHGLVSPAEF 517

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  I  ++LE+    + +W D+       I +N+++  L D +L + +  +
Sbjct: 518 IPLAEETGLITGIGDWVLEQAISQLKAWTDEGFTG--RIAVNVSALQLSDRDLSQRIDDM 575

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +   S  +++L  +E+ +M + ERS   L R R +G++L +DDFGT  S L+YL  +P
Sbjct: 576 LKRFDVSAGQLELEITETALMDDIERSMATLKRFRDLGLTLAVDDFGTGYSSLAYLKALP 635

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              VK + + +TG  +     A+ R+II +A N+   +IA+ +  E     L   GCD +
Sbjct: 636 VSRVKIDQAFVTGLPDNDQDEALCRTIITLAHNMGFEVIAEGVETEAQAGWLAISGCDEM 695

Query: 936 QDSHVASP 943
           Q   +  P
Sbjct: 696 QGFLLGRP 703


>gi|26989901|ref|NP_745326.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24984812|gb|AAN68790.1|AE016511_3 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 754

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 100/435 (22%), Positives = 200/435 (45%), Gaps = 7/435 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +         A  D+L+G+ NR+ F++  + +L            ++ ID+D++K 
Sbjct: 307 IVRLEDEHRRSSHAAATDHLSGLHNRRQFVEVASQVLTR-QRGKRRLMAILFIDMDRFKS 365

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L ++  RI  LL+  D  +R  G+ F ++L  E +  +I  +   + 
Sbjct: 366 INDSLGHKIGDLLLQAVAGRIQRLLEPGDEASRFGGDEFVVLLAGERSEEQINAWVHELV 425

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + ++    L  +E+  + S+G +           ++++A+ AMY AK  G      F   
Sbjct: 426 QKLSATYALDGQEVNTSPSVGVSICPRDGQDIDSLIRSADAAMYSAKQAGRAQFRFFDPS 485

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +        +++    A+   +  L Y P +RL   ++ G EAL++WDHP++G +    
Sbjct: 486 LNLADIQAFTLEQAFGSALAERQFVLHYQPQMRLDTHQVQGYEALVRWDHPEFGLLYPDR 545

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +   +L+     + SW  Q       + +N+++  L   +  + + +
Sbjct: 546 FIDLAERSGFIVELGWEVLQLACEALSSWDAQGRKT--RLAVNVSALQLRQADFADRLLS 603

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     +P +++L  +E+ ++     +   L  LR  G+ ++LDDFG   +  ++L  +
Sbjct: 604 KLQHHGIAPQQLELEITETTILDPEGTAVAHLHTLRGAGLGISLDDFGRGYAGFAHLHSL 663

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + SL+     +     I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 664 PLSKLKIDRSLIAALSNSHDDSPIVSSTIILAKRLGLEVVAEGVETREQVVYLKLAGCDI 723

Query: 935 IQDSHVASPLGFNSI 949
            Q  H + PL    +
Sbjct: 724 AQGYHFSRPLSLAQL 738


>gi|146279681|ref|YP_001169839.1| hypothetical protein Rsph17025_3666 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557922|gb|ABP72534.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 733

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 197/447 (44%), Gaps = 13/447 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S E     A  D L GIPNR  F DRL   L  +         ++ +D+D++K IND
Sbjct: 295 LHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALK-AEKRGGPPVALLCLDLDRFKAIND 353

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD+++  +  R+   ++  D +ARL G+ FG+ILI   +   +A +   +   +
Sbjct: 354 TLGHPAGDELIRQMAGRLCSHVRETDTVARLGGDEFGVILIGMGSEETLARYCSGLIHLL 413

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P +L   ++ ++ASIG A           ++++A+ A+Y AK  G             
Sbjct: 414 SAPCDLKTGQVQISASIGAACAARFDGGMEALMQSADAALYRAKADGRGRFCIATPEMND 473

Query: 702 SDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R+   I+ DL  AV    +  ++Y PI       +   EAL++W HP  G +    F+
Sbjct: 474 MFRLRHEIERDLRRAVAEGGQFQVLYQPIFDAEGGMVAA-EALVRWTHPVRGVLGPESFI 532

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I+ I L++L++      +           I +N++   L      E + A +
Sbjct: 533 GIAEDTGLIEPIGLWVLDQACVLAAT------SGLPKISVNVSPIQLRRAGFAEEVLARL 586

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +       R++L  +E   +     +     RLR  G+S+ LDDF T  SLL Y+     
Sbjct: 587 AAHRLPGHRLELEVTEKRALDTGSETLSNFDRLRAAGVSIALDDFATGQSLLRYVRDYQI 646

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +           I+R+I+ + + +   + A+ +      + L  MGC   Q
Sbjct: 647 DTIKIDRSFVARLGSGDGTDQIVRAILDLGRAMGIEVTAEGVENAAQREALLGMGCHVFQ 706

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              +  P+    +  L     P  K+ 
Sbjct: 707 GFLLGRPMDALRLAALSARHRPSQKSA 733


>gi|103488206|ref|YP_617767.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
 gi|98978283|gb|ABF54434.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
          Length = 543

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/445 (25%), Positives = 212/445 (47%), Gaps = 11/445 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I E+ ++ +     A  D LTG  NR++ L +   ++  +   +     + ++D+D +
Sbjct: 80  REIRERTEAEQRARYLADTDPLTGFLNRRALLVKGQRMIAEAVA-EKREVALFLLDLDHF 138

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-KIADFAI 635
           K +ND+ G A GD VL     RI  +L      ARL G+ F  ++  + ++   I   A 
Sbjct: 139 KTVNDIHGHAAGDRVLQVAAERIAAVLPPNATKARLGGDEFVAMMAFDPSARGDIDALAA 198

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  ++   I    ++I + AS+G A  +   ++   M++ A++AMYH K  G N    F
Sbjct: 199 ELVTALDNRIMHDAQQIRIGASLGIALASDGGVSMDTMVRQADIAMYHGKDEGRNRHVWF 258

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +      R  I+  +   +   E    + P + +    +VG E L++W+ P+ G I 
Sbjct: 259 EQGMEMAVQVRNQIETGIREGMPRGEFVPHFEPQVDIASGRLVGFEMLMRWESPEHGLIP 318

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE   +I  ++L ++         W      P I + +NI+ + L D    + 
Sbjct: 319 PERFIPVAEASGLIGELSLRVIRDAMDIAKRW-----DPSIILAVNISPQQLKDPWFSQK 373

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L+ +T +  +++++  +ES +  N    R ++  L+  G+SL+LDDFGT  S LS+L
Sbjct: 374 LTKLLVETGFPAAQLEVEITESSLFENLPLVRSIVTSLKNQGVSLSLDDFGTGYSSLSHL 433

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +PFD +K + S +T    +    AI+ +I+ + +++   I A+ +  E    ELTR+G
Sbjct: 434 RALPFDRIKIDRSFVTAMRGSPDAQAIVLAIVRLGESLAMPITAEGVEDEATAIELTRLG 493

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C   Q  H           +LL +R
Sbjct: 494 CAKGQGWHFGRAASAADTERLLADR 518


>gi|241206386|ref|YP_002977482.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860276|gb|ACS57943.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 736

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 217/447 (48%), Gaps = 13/447 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K         A +D L+G+ NR      +   +  +         ++ +D+D +K++ND
Sbjct: 292 LKAEENSAREEALRDRLSGLSNRDGLGLAVDRFVVEARQTKR-NVLLLYLDLDGFKEVND 350

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD ++ ++   +  L+    +LAR+ G+ F I  +S++ +      A  +   +
Sbjct: 351 SYGHGTGDQLIRAVAAGLAVLIPQGAVLARIGGDEFAIAFLSDSENAAALQLAEQILDFL 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +  R + V ASIG A   S  I   E+++ ++LAMY AK  G   +  +  S   
Sbjct: 411 VEPLEIGRRVVVVGASIGIAMSPSGTIGREELVRRSDLAMYKAKEAGRARMTLYDPSMDT 470

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL +A+E+ +L L Y P+I      + G+EAL++W+ P  G +S   F+ 
Sbjct: 471 DREQRNALELDLRIAIESGDLTLAYQPLIDAATHAMTGVEALVRWNRPGHGPVSPELFIP 530

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   +I+++ LF+L +       W +      + + +N++     +    + ++ ++ 
Sbjct: 531 IAETSGLIESLGLFVLRKACETAKQWPE------LNVSVNVSPGQFRNPAFTDYVRYVLK 584

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T     RI L  +E  ++ NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD
Sbjct: 585 QTEIEAGRITLEITEGYMIQNPQRTRQSIERLKGLGVKVALDDFGSGFSSIGYLRQFGFD 644

Query: 880 TVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + SL+ G  +KR   +L++ + +A++++  + A+ I  E     +   GCD +Q  
Sbjct: 645 RIKIDRSLVMGVNDKRQREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQGY 704

Query: 939 HVASPLGFNSILKLLKERF---PLVKN 962
               P+    I ++L ER    P  + 
Sbjct: 705 LFGKPVISELITEMLHERREAEPAARR 731


>gi|170721852|ref|YP_001749540.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169759855|gb|ACA73171.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 775

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/438 (23%), Positives = 200/438 (45%), Gaps = 7/438 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   + +       A  D+L+G+ NR+ F++     L            ++ ID+D++K 
Sbjct: 328 IGRLEDAHRRSSQAAATDHLSGLHNRRQFVEVAGLALTR-QRGKRRLMAILFIDMDRFKS 386

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +L ++  RI  LL+  D  +R  G+ F ++L  E +  +I  +   + 
Sbjct: 387 INDSLGHKIGDLLLQAVAGRIQRLLEQGDEASRFGGDEFVVLLAGERSEEQINTWVRELV 446

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++   +L  +E+  + S+G +           +++ A+ AMY AK  G      F  S
Sbjct: 447 QKLSATYSLDGQEVNTSPSVGISICPRDGQDIDSLIRCADAAMYSAKQAGRAQYRFFDPS 506

Query: 699 SF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     +++    A+   +  L Y P IRL  + ++G EAL++WDHP++G +    
Sbjct: 507 LNLSDIHAFTLEQAFGSALAERQFVLHYQPQIRLDTQRVLGYEALVRWDHPEFGLLYPDR 566

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +   +L     ++  W  Q       + +N+++  L   +    + +
Sbjct: 567 FIGLAERSGFIIELGWEVLRLACEELARWDVQGRDN--RLAVNVSALQLRQADFSTRLLS 624

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     SP R++L  +E+ ++     +   L RLR  G+ ++LDDFG   +  ++L  +
Sbjct: 625 KLQFYGISPQRLELEITETTILDPEGTAVEHLHRLRAAGLGISLDDFGRGYAGFAHLQSL 684

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + SL+   +       I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 685 PLSKLKIDRSLIAPLSNSYDDSPIVSSTIILAKRLGLEVVAEGVETREQVVCLKLAGCDI 744

Query: 935 IQDSHVASPLGFNSILKL 952
            Q  H + PL    + + 
Sbjct: 745 AQGYHFSRPLSPAQLREY 762


>gi|330957325|gb|EGH57585.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 554

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 209/441 (47%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +   A QD LTGI NRQ F      +L  S   +     +  +D+D ++ 
Sbjct: 110 VHERGRLEDSLRRLAGQDPLTGIANRQGF-----QVLLASRLAEGGDLALGHLDLDNFRS 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D +ARL G+ F +++ + N   +    A  + 
Sbjct: 165 ANDSLGHQAGDRLIMQVVARLKNQLDAGDQIARLGGDEFALLIDTRNTPERAMQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +       ++ +A +AM  AK   G     F   
Sbjct: 225 DVLSEPYWVDGESLLLGCSLGIAHSQTEPE-VDPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     ++ +L  A+   E+ L Y P + L    IVGLEAL++W H + G +  SE
Sbjct: 284 ISRNARSLADLEGELRRALRRDEMELHYQPRLCLQTGRIVGLEALVRWRHHERGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALRDMQAMREQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++ R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEEHDVDARWLEFELTETSVMRRSDQVRQTMEALGRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     +  L   GCD 
Sbjct: 463 PIALLKVDMGFVGQMESREENRKLVHAMINLAHNLNLEVVAEGVETIGQMALLRSFGCDQ 522

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   ++ PL   +++K L+ 
Sbjct: 523 VQGYLISRPLPMAALVKYLRS 543


>gi|260777645|ref|ZP_05886538.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605658|gb|EEX31943.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 825

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 224/446 (50%), Gaps = 7/446 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  DI + + S   +   A  D+LTGIPNR     +L + ++   TD   +  V+ +D+D
Sbjct: 380 IEEDIKQLEISSMQLERLAHIDSLTGIPNRSRLDAQLDSCIEKCKTD-KSKYAVLFVDLD 438

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K+IND  G   GD++L +++    +L +  +IL R  G+ F           +    A
Sbjct: 439 DFKRINDKYGHHAGDELLKAVSATFSKLKRDDEILVRFGGDEFVFGFP-IVEVEEANLRA 497

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             ++++IA+PI     +++ + SIG A +      SSE+L ++++A+Y +K +    ++ 
Sbjct: 498 ERIQEAIAVPILFHGIQLSTSCSIGIAIFPEHGANSSELLSHSDVALYTSKEKTKGQIQL 557

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   +S     +  ++E L  A+   E+ + Y P I   + EI+G+EAL +W  P++G +
Sbjct: 558 FTKGISDILEYQFALEEQLSFALAREEISVHYQPKINAANGEIIGVEALCRWHSPEFGYV 617

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ +AE+  +I  I  F++++  +DI+ +    N   + + INI+   LL  +   
Sbjct: 618 SPDQFIDVAEKTGLIIEIGDFVMKQACKDIVLFNR-LNQSQVGVAINISPLQLLHKDFES 676

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             + +++    +   +    +E+VV+ + +R + +L  L   G  ++LDDFGT    L Y
Sbjct: 677 KAKDILNSNELNNHLVIFEITENVVIEDTDRVKNILTNLSAEGFGVSLDDFGTGYCSLRY 736

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +P   +K +   +    +     ++  +II M  + +  ++A+ +  +   + L +M
Sbjct: 737 VNELPISEIKIDRQFIRDINDDNYLDSLANTIIAMGHSNQLNVVAEGVETKRQAELLNQM 796

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GC  +Q  +   PL FN +     +R
Sbjct: 797 GCQVLQGYYFDKPLTFNQLCDKYAQR 822


>gi|284992456|ref|YP_003411010.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284065701|gb|ADB76639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 893

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 139/776 (17%), Positives = 295/776 (38%), Gaps = 40/776 (5%)

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
           +  +R+ +      +A  VLG++ +                + + A   + +   L+   
Sbjct: 123 WPGSRAVLDGAIATLAVAVLGHVLLAALLAGVQGTADGLIAVGYPAVGAVLVGVGLVT-C 181

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY- 328
                  R  A         +A +A+   +         ++A       +L  +   +  
Sbjct: 182 TAVRGARRTAAVWLLAASVAMAVVAVGGALGRTLGSTADTVATEQAWLAMLAASVLAVRS 241

Query: 329 --HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA---LVGGLVLIVILIG 383
                   +    ++P   L+    +   + +         +P       G   +V    
Sbjct: 242 DPGEPATPDHDRPIVPLRGLVLASGVASGVLLLLLAGVLAGRPLDPVEAAGGAALVATTS 301

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV-WDWDIVRDRVTTTPDIATILGLAS 442
                        ++ +         A++ SGD V    D        +  +   LG   
Sbjct: 302 LRTALWAADGYRLTRRLVRTEGYFR-ALVHSGDAVTLVLDGAGRIGWASGAVEAQLGWTD 360

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRP 501
             + G +      +   DRD    +  +  G    G L    R+R  D     + +    
Sbjct: 361 RELTGRLLA--QLLDDGDRDLVARVAQAVRGGTTVGLLPATVRLRTRDGSRRDVDVTGAA 418

Query: 502 -----MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                +S   G     +    D+T++ +S   +   A+ D LTG+PNR   +  L  +  
Sbjct: 419 SAPAAVSGPGGR-TGLVLHLRDVTDRSRSRRELERMAYTDFLTGLPNRARLMAALGEVST 477

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +A        ++++D+D +K +NDV G   GD +L  +   +    +  D++ARL G+ 
Sbjct: 478 AAA-----PGCLLLVDLDGFKTVNDVAGHDAGDRLLCEVAETLRSAAREDDVVARLGGDE 532

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINL--------LEREITVTASIGFASWTSSKI 668
           F +++       +   FA  +   +                  + V+ S+G A   +   
Sbjct: 533 FALLVR--AGRDEATVFAERLVVLLDRDHRPPAPDGSARGGLVLPVSGSVGVAELRA-GE 589

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
             +E ++ A+LA+  AK  G N V +   +  R       +  DL  A+ +  L L   P
Sbjct: 590 DPAEAVRRADLALRAAKAAGKNCVRTTGEALDRVVDRRARLARDLPDAIVDGGLSLALQP 649

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+ + +  ++GLEAL++W HP+ G++   EF+ +AE+  ++  +  ++L      +    
Sbjct: 650 IVGVEEGRVLGLEALVRWRHPELGDVPPEEFVGVAEDEGLVVPLQRWVLGAATAALAPLL 709

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            Q     + + +N++ + L    L   +   ++ +    SR+ L  +ESV++   +R   
Sbjct: 710 AQGRD--LELGVNVSVRHLQAGCLAADVARALAASGVPASRLMLEITESVLVEAEDRVER 767

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            L  LR+ G  +++DDFG   S L+ L  +P D +K +   +       +  A++ S++ 
Sbjct: 768 ELAALREAGCMISIDDFGKGHSTLARLSRLPVDVLKMDRDFVAHIEDDPRTAAVVASVVE 827

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           + + +   ++A+ +     +  L  +GC ++Q   +  P+    +  +L   +  V
Sbjct: 828 LGRTLGLDVVAEGVETPGQLSVLRGLGCRFLQGYLLGRPVPTADLPAVLAAPYAGV 883


>gi|21232072|ref|NP_637989.1| hypothetical protein XCC2641 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767802|ref|YP_242564.1| hypothetical protein XC_1476 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113815|gb|AAM41913.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573134|gb|AAY48544.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 788

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/667 (17%), Positives = 242/667 (36%), Gaps = 22/667 (3%)

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351
            +     +  +       ++ +   +     T       ++     + L+   +      
Sbjct: 128 YLGSAIALWKHTDGDILHLSLLADRAASAQATGTPDARALQSLRAELHLLDGRMRRDAAQ 187

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               +    R+ +D++    +  L+L++          VLA       + S   R   A 
Sbjct: 188 FLTLLTRCARMLHDVMVTCSLATLLLVLSTC-------VLAIRRTRDYLMSHEGRFRTAF 240

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +   +  +D+    +     +A IL     ++          +H +D           
Sbjct: 241 QHAALGMVKFDLSGRVLDANASLANILQYPPEAL--QACTLAEVMHPDD---IVLDSRGL 295

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           + + R     E R   +D    W       +     +    + +  D+++  +  + +  
Sbjct: 296 IDWPRLMQAGELRFLRSDGGVLWGRWSASLVEPGPQEPSLVLAVIEDVSQAHELADEVAY 355

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +A  D LTG+ NR+    RL  ++D       L   +  +D+D +K +ND  G AVGD  
Sbjct: 356 HARHDALTGLINRREIERRLQRLID-PPQSPQLCHALCFVDLDHFKLVNDTFGHAVGDKF 414

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LER 650
           L      I   L+  D L RL G+ F I+L +  +          M   +  P +    R
Sbjct: 415 LCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLAHAHTLLERMHGVLGQPWSHQGGR 473

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---- 706
            +T + S G           + ++  A+LA + AK  G N + SF  +     R      
Sbjct: 474 PLTPSCSFGVVEIRQGADDVNLLMTAADLACHAAKEEGRNRIRSFGETDLAMARRRHDGG 533

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               +  A+    L L    I  L D   V  E L++        +S  EF+   E   +
Sbjct: 534 WISAVQQAIAEDRLLLYAQKIQVLSDPGRVQYEVLVRMRTRDGRVLSPGEFLPAVERYGL 593

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            + ++  +LE +   + +         +   +N++++ +   +  + + AL  +     +
Sbjct: 594 GRMVDAHVLETLCAQLSANPAHVASLDL-CHVNLSAQSIAQRDFLDFVCALFERYPALVA 652

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ L  +E+ V+G+ E ++  +  +R  G  + LDDFG+  +   YL     D +K +  
Sbjct: 653 KLCLEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCG 712

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +          A + SI  +   +   ++A+ +  E DI  L   G   +Q   +  P 
Sbjct: 713 FVRNYAHDAVDRATVHSIAQVGLALGIEVVAEGVESEADIAGLREAGVGQVQGFSLHRPC 772

Query: 945 GFNSILK 951
             + +L 
Sbjct: 773 PLDDLLH 779


>gi|302542290|ref|ZP_07294632.1| pas:ggdef [Streptomyces hygroscopicus ATCC 53653]
 gi|302459908|gb|EFL23001.1| pas:ggdef [Streptomyces himastatinicus ATCC 53653]
          Length = 1019

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/771 (18%), Positives = 289/771 (37%), Gaps = 58/771 (7%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELL-IWRACSEIALSSSLIIFLFMYLHWNRW---HAKV 282
             L Y  +D   +S ++ L         R     A+ +  +  L   L  +     H + 
Sbjct: 227 FSLAYPLLDIVLVSMVIVLHFRRSSSASRPAVNTAIGAFALTVLCDALFTSPLLHEHYRS 286

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
           G I  +G    ++L   + +       +AR   A                       L P
Sbjct: 287 GQILDAGWFAGSMLLAYAPW-------VARRDAAEAPPPAARRPEGRSRPTAGAFAALAP 339

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
                      L+  +  R  + ++        V++ +L+   ++  ++     +Q +  
Sbjct: 340 YLAAAVCTLGILFNLMDGRPVDGVVL--FTACAVVLALLVRQAIM--LMDNIALTQELAQ 395

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
                   V  S D++            +P  + + G  +G + G        IH  D  
Sbjct: 396 AENHFRSLVQSSSDVIMIAAPTGILRYVSPAASGVYGRDAGELEGS--ELASLIHPEDLG 453

Query: 463 NFRTILDSFVGY---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                +  F+          + E R R+    +  +   I             I  + D+
Sbjct: 454 PVVHEVRRFLAASPCEEPTTRIECRFRSGSGDWLNVESTINRHHG------GLIFNSRDV 507

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+ +    +  +A  D LT +PNR  F  R+   +       +    V+ ID+D +K +
Sbjct: 508 TERVRLQAQLQHSAEHDPLTDLPNRALFTKRVRHAVG-GRRRTDAGTAVLFIDLDGFKAV 566

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFP--DILARLSGNRFGIILISENNSL------KIA 631
           ND +G   GD++LV   RR+ E ++    D  ARL G+ F  +++ +          +I 
Sbjct: 567 NDTVGHQAGDELLVQAARRLQESVRSGSGDCAARLGGDEFAALIVGDGADDTSTRECRIL 626

Query: 632 DFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           + A  +R  ++ P  +    E+ V ASIG A +     +   +++NA+LAMY AK  G N
Sbjct: 627 EIADRLRARLSQPYRVEDGTEVRVAASIGVA-FAEPGTSPGALMRNADLAMYRAKAAGKN 685

Query: 691 HVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            VE +            +    L  A+ + E  L++ P++ L    I  + A  +W   +
Sbjct: 686 RVELYAPQMQADVARRAEVQTRLRAALHDGEFVLLHQPVVELATGRITAVAAQPRWRSAQ 745

Query: 749 WGNISSSEFMLIAEELCM-------------IKAINLFMLERIARDIISWRDQANMPPIF 795
               + +EF+ +A+                    +  + LE         R   ++  + 
Sbjct: 746 GILFTPAEFLRVADNNGRGGDHGRAGEEGARTAELTRWTLEAAVEQAAQRRRDGHV--LP 803

Query: 796 ILINIASKDLLDNELCEG-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           + + + +  L+D  +    ++ L+++       + L  ++S      +     LG LR++
Sbjct: 804 VCVRLPAGRLVDKSMPPKAVETLLARHGLPSGALILELTDSDPRVPLDELEHRLGALRRL 863

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G+ + LD FG+  + +  L  +P D +K +  L+ G  E      I   ++ +  ++   
Sbjct: 864 GVRIALDGFGSGYAAIRALRRLPIDVLKLDQGLVEGVVESSRLHKITSGLLRIGGDLGMQ 923

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKN 962
            IA+ +     +  L  MGC + Q    + PL  + + + L    +P+ ++
Sbjct: 924 SIAEGVDLPEQLVTLRGMGCTHAQGMAFSGPLDEHRLRRALTRGSYPVPRS 974


>gi|310826499|ref|YP_003958856.1| hypothetical protein ELI_0881 [Eubacterium limosum KIST612]
 gi|308738233|gb|ADO35893.1| hypothetical protein ELI_0881 [Eubacterium limosum KIST612]
          Length = 562

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/553 (19%), Positives = 222/553 (40%), Gaps = 24/553 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S  +  + D V+  D+  D    +P++     L      G +  W   +H  DR  +  
Sbjct: 20  YSAIIRSTDDYVYIVDMNTDMALVSPNMERDFELPGRQFKGLVPMWGELVHEKDRPRYNE 79

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D  +         E++VR    ++ W++ R     N+      + G+  D+ +  K  
Sbjct: 80  SIDEMLRGDTDIHHVEYQVRNRKGEYIWVLCRGILQKNAQNQPAMFAGVVTDLGKMGKI- 138

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D  TG+   +     ++ +LD  +        +M++ +D + +IND+    
Sbjct: 139 ---------DYTTGLFTYRECEKEISELLDKESEKPG---GLMLLGLDDFVRINDLNSHL 186

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL    + + +LL     + R  G+ F ++        ++      +         
Sbjct: 187 FGDGVLRQFAQTVQQLLPPGASMYRFDGDEFAVVCPG-AGEEELEAIYKRLHAYSNRVHT 245

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           L  +E   T S G            +++K A  A+  +K +G N + ++  +  RS    
Sbjct: 246 LDGQEYFCTVSAGMTLLGRDSQNYPDLIKCASSALEASKTKGKNIMTAYTPALMRSKLRA 305

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++    L L+V N      LVY P     D  + G EAL++W    +G ++ +EF+ + E
Sbjct: 306 LELTSRLQLSVVNGMEGFRLVYQPFAHSKDLGLAGAEALLRWSGEPFGEVTPAEFIPLLE 365

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  ++LE+  +    W D    P   + +NI+   +LD      ++  + +  
Sbjct: 366 SSGLIVPVGKWVLEQAVKTCKKWSD--REPDFIMNVNISYLQMLDESFAGHVEKTLKENG 423

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +ES  + +    + +   LR + I + +DDFGT  S L  L   P D VK
Sbjct: 424 LDSRHVVLELTESCFVTDMGGLKEIFRHLRGMRIQIAMDDFGTGYSSLGMLSQSPADIVK 483

Query: 883 FNGSLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +   +            + + S+I +  ++  T+  + +  + +++ +  +  D IQ  
Sbjct: 484 IDRLFIEAIDRDENVFNRSFIASVIKLCHSVGITVCVEGVEEQDELRAVCALEADSIQGY 543

Query: 939 HVASPLGFNSILK 951
           +++ P+   +  +
Sbjct: 544 YISRPISPEAFEE 556


>gi|268680316|ref|YP_003304747.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618347|gb|ACZ12712.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 762

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 217/440 (49%), Gaps = 14/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+    ++  A  D LT +PNR      +   +   A       +++ ID+D +K IN
Sbjct: 327 EEKR-HADLIEQATHDPLTLLPNRHFLHQNIHQWIYPKA----PMFSLLYIDMDYFKNIN 381

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD+VL+ + +R+ ++     ++ R  G+ F ++L       ++  FA  + +S
Sbjct: 382 DSFGHHLGDEVLIDIAKRLAQIAPKDSLIVRHGGDEF-LLLTHMYEHHELLSFASHLIES 440

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  + +   T+ AS+G A +     T   +L+ +++AMY +K    N    F     
Sbjct: 441 LSQPYEIHQFHFTIGASVGIARYPEHGETLDALLRASDIAMYTSKKI-KNSAHIFANEMQ 499

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG-NISSSEF 757
                 + ++++L  A++N+EL++VY P +      + G+EAL++W+   +G  +   +F
Sbjct: 500 EGFLKNITMEQELRKAIKNNELFMVYQPQVDTQ-GNVFGVEALVRWNSTAFGKLVPPDQF 558

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   ++  +   + E    DI +  +Q     + I +N++ +  +D    E +  +
Sbjct: 559 IPLAEATGLMPKLGRLIFETACYDIAAL-EQELKRSLQISLNVSVRQFMDPLFLEDLLNI 617

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + KT      I L  +E++ +        LL +++ +GI +++DDFGT  S LS L  +P
Sbjct: 618 LDKTDLHTLNITLEVTENLFIEELHYIVPLLEKIKSLGIQISMDDFGTGYSSLSMLRQLP 677

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    +      ++++II + KN+   I+A+ +  +   + LT  GCD  
Sbjct: 678 IDELKIDKSFVYTIDKDETSAKMVQNIITIGKNLNMHILAEGVETQEQKELLTAFGCDRF 737

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + PL   ++L  LK 
Sbjct: 738 QGYYFSKPLNKEALLAFLKS 757


>gi|88812491|ref|ZP_01127740.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrococcus mobilis Nb-231]
 gi|88790277|gb|EAR21395.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Nitrococcus mobilis Nb-231]
          Length = 654

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/567 (23%), Positives = 245/567 (43%), Gaps = 43/567 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D +   D              +      S  G     L  + I D      
Sbjct: 97  FRGMVEAATDAMLLVDNWGVVRFINSSGERLFRQPRSSALGNSVEQLLSMPIPD------ 150

Query: 467 ILDSFVGYRRGRLQYEFRVRA----------ADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            + +      G +    R+R            D      ++ + P+   + + +  +   
Sbjct: 151 -MSTAARTVTGLITDTLRLRCQEQLALWGVGGDGSEFSAVVSVIPLEGLS-EPMALL-QV 207

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DITE+++    +      D +TG+PNR  F DRL          +N    +  IDID++
Sbjct: 208 HDITEEQQREARLRHLTNFDPVTGLPNRALFTDRLRVAATRCTRGEN-SLVLGYIDIDRF 266

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K  N+ LG   GDDVL  + RR+   +   + LARL+G+ F +++     + +I   A  
Sbjct: 267 KDFNETLGHRTGDDVLREIARRLKRHVCDENTLARLNGDEFALLIEGSYTANEIKILARG 326

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           M  S+A P  +   E+ VTAS GFA +      + ++L+ AE+AMY AK +G N+   + 
Sbjct: 327 MLDSLAQPFFIAGHELFVTASAGFAVYDCVGDEAGDLLRKAEIAMYRAKSQGRNNFCFYS 386

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +     S+R+ ++ +L  A+E  E  L Y P++ +    ++GLEAL++W HP+ G I  
Sbjct: 387 AALEGGVSERLRLEVELRHALERQEFILYYQPLVEVRGHRVIGLEALLRWQHPQRGLIGP 446

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           SEF+ + EE  +I  +  +++    R +++         + + +N++++ +        +
Sbjct: 447 SEFIPVLEETKLIVPVGEWIMHEACRFLVALSKDFGR-SLRLAVNVSAEQIRHPGFARSV 505

Query: 815 QALISKTLYSPSRIKLSFSESVV---------MGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +  +  +             SV+         M +       L  L+++G+++++DDFGT
Sbjct: 506 ERALLASGLPA---------SVLELELTETLLMDHTATVHESLAALKQLGVAISVDDFGT 556

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P   +K + S +T         AI  +II MA+++   ++A+ +  E  
Sbjct: 557 GYSSLAYLKRFPVSALKIDRSFITDVAGGSDDRAIAGAIIAMARSLGLGVVAEGVESESQ 616

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL 950
            + L R     +Q    A PL      
Sbjct: 617 ARFLRRWPELIVQGYFFAPPLPPAEAR 643


>gi|262273222|ref|ZP_06051038.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262222800|gb|EEY74109.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 1043

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/575 (19%), Positives = 220/575 (38%), Gaps = 17/575 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + +       Q +        +       ++   D      +        LG +  
Sbjct: 461  LFEARDISQRKLAEQKLQRSEVEYRMLYEQQPVMLLTIDQQSRIQSVNQCATEWLGFSKH 520

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             M G         + +     R++L+     R G  + E R R +D    W+   +R   
Sbjct: 521  HMLGHKVTDF---YADGSPPPRSLLNGKQRERFGIRRREIRYRTSDGNERWVRESVRSTL 577

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                   + + +  DITE ++  + +   A  D LTG+ NR  F  RL  +L     +  
Sbjct: 578  ----VQSQLLLVGEDITENRRMEQQLRYQAQHDFLTGLLNRNCFEARLVDVLGALKEN-G 632

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +   +  ID+D+++ IND +G   GD+ L    + + E L     LARL G+ F +I   
Sbjct: 633  VVHALFYIDLDQFRVINDTVGHEAGDEALKQTAQILRESLPIGATLARLGGDEFAVICYD 692

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N    +      +     +        + +  S+G      +  T  ++   A+ A Y 
Sbjct: 693  CNEQQALEQGKRILDTLSELDFYWKNTRLALGCSVGIRMLDKTASTPQQVHAQADTACYA 752

Query: 684  AKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE--EIVG 737
            AKH G + V  +R       R   +      +  A+      +   PI+ +     E + 
Sbjct: 753  AKHEGRSRVHLYRPDDQELRRHEREMSFVSKIHEALAEDRFEVYAQPIVSVNANLEEKLY 812

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +   +F+  AE   M   I+  ++E+         +  ++  + + 
Sbjct: 813  FEVLVRMRDKEGNYVPPGQFIPAAERFNMAHMIDKRVIEKTLGWFDRHPEHVDVVGM-VS 871

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + D      +   +  +    S I L  +E+  + N   +  L  +L+++G S
Sbjct: 872  INLSGRSMSDEGFIHFLLEALKTSTIPSSSISLEITETAAISNLSDAIGLFTKLKQLGCS 931

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D +K +G  +      E    ++R+I  +A  +    +A
Sbjct: 932  IALDDFGSGLSSFGYLKRLPVDIIKIDGQFVRDIADDEADYVMVRAIHELATQMGKKTVA 991

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            + +  +  +  L  +G DY Q  H + P     ++
Sbjct: 992  EFVENDAILMRLCSLGVDYAQGYHFSVPKPMEEVI 1026


>gi|325962528|ref|YP_004240434.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468615|gb|ADX72300.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Arthrobacter phenanthrenivorans Sphe3]
          Length = 725

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 133/600 (22%), Positives = 237/600 (39%), Gaps = 46/600 (7%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +L+      H  A       +       S  +  + D +                 T+  
Sbjct: 135 LLLSVRGTAHRQA---ADADLREAMSLLSATLESTADGILVMSSEGRVAGFNDQFLTMWS 191

Query: 440 LASGSMHGPIRNWLPYI-------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
           +    M G     +  +        I   +    + +         L         D   
Sbjct: 192 IPPELMEGDSEEPILRLVISQMAEPIGFVERINQLEEDPAAESHDVLDLT------DG-- 243

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC--------------NAFQDNL 538
                  RP       I+  +    D+T ++K+ E                   AFQD L
Sbjct: 244 RTFERYSRPQR-VGQKIVGRVWSFRDVTPRRKAQEQAHQAMLDLAAQAEKLRAMAFQDPL 302

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F D L   L            + +   D +K++ND+LG   GDD+LV + RR
Sbjct: 303 TGLANRAVFNDALAAALREPRLKTVDVLLLDL---DDFKEVNDILGHQAGDDMLVEVARR 359

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +       D++ARL G+ F ++L +  +   IA     + + + +P+ +    +  + S+
Sbjct: 360 LRGCAPTADVVARLGGDEFVVLLTACPDPGAIAAC---IVRCLHVPVTIQGTVLRPSLSL 416

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G AS     + +SE+L+ A++AMY AK  G N    F      +      ++  L LAV 
Sbjct: 417 GLASLGPDNVGASELLRQADIAMYAAKAAGKNRFLPFHPDMMTALVQRTNMESGLQLAVA 476

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            +E+ + + PI+     ++V  EAL +W     G +  S F+ +AE   +I  I   ++ 
Sbjct: 477 RNEITVDFQPIVSHRMGQVVTFEALARW-DRDAGRVPPSVFIPLAERTGLINEIGTEVMA 535

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                +  W  +   P   + +N++ + L D    + +  L   +  +  ++ L  +ESV
Sbjct: 536 LGMVQLAPWLSE--DPSRSLAVNVSGRQLQDPHFADTVLGLAEASGVAAYQLVLEVTESV 593

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEK 894
                      L  LR +G  + LDDFGT  S L  L  +P DTVK + + ++   +  +
Sbjct: 594 FFDADCGLIRQLSALRDMGARVALDDFGTGYSSLGRLQDLPVDTVKIDKTFVSMVRTGNE 653

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           R+ IL S+I MA ++  T+ A+ +        LT + CD +Q    + P     + + L+
Sbjct: 654 RLPILSSMINMAHSLGLTVTAEGVETAEQADYLTALECDTLQGYLFSLPQPGRRLDRALQ 713


>gi|284042675|ref|YP_003393015.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
 gi|283946896|gb|ADB49640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Conexibacter woesei DSM 14684]
          Length = 587

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/582 (21%), Positives = 234/582 (40%), Gaps = 14/582 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
            ++L+ ++        + A     + I             +       D     V   P 
Sbjct: 1   MILLLPVIALLAGTALLGARRLHRRSIRRAESNLRTIFDTAPIGNAVLDDGDRVVVANPA 60

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           +A I+G     + G  R     +H  D       + +     R  L+ E R   A  Q  
Sbjct: 61  LARIVGFTPEELRG--RTLAELVHPEDLPRLSGAIAALRAGERRGLETEIRCLHATGQPV 118

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              +    + +++G   R +    DITE+K+    +   A  D LTG+ NR+ F   L  
Sbjct: 119 PAAVHAAALRDTDGGRSRVLVQVLDITERKRVEAHLQHMADHDPLTGLLNRRRFEQELER 178

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +            V+V+D+D++K++ND  G   GD V+ S+ R +   L+  D +AR+ 
Sbjct: 179 HVAHVRRY-GPEGAVLVVDVDRFKQVNDAYGHTAGDRVIASVARVLHRRLRSTDTVARIG 237

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKI-TSS 671
           G+ F ++L    +  +    A  + +++    +  + E   VT S+G          ++ 
Sbjct: 238 GDEFAVLLPK-ADRAEAEIVARRLVEAVRAQADPGDGERTHVTISVGATVLDERSELSAE 296

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
             + +A+LAMY AK  GG+    F        R       ++ +  A+ +    LV  P+
Sbjct: 297 AAVVDADLAMYDAKDSGGDGFAFFEADVHARSRSRARTTWRDRIVDALAHDRFALVAQPV 356

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +      +V  E L++        I  + F+ IAE   +I AI+ ++  R    +     
Sbjct: 357 VDATSGVVVQHELLLRLTGSHGDLIPPAAFLSIAERDGLIVAIDSWVARRAIGLLAELER 416

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P+   +N++ + L D +L   +   + +T   P  +     E+  + + + +R  
Sbjct: 417 SGTATPLE--VNVSGRSLADTDLLAAIAGELRRTGVDPRNLVFEIPETAAVADIQLARAF 474

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPM 905
             ++R +G    +DDFG     L YL ++PFD +K +G L+   +       ++ S + +
Sbjct: 475 AQQVRALGCRFAIDDFGAGLGSLYYLKHLPFDMLKLDGELVEQCSRTVADRLVIESAVNV 534

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           A  +    IA+ +        LT +G D IQ  H+A P    
Sbjct: 535 AHGLGAVAIAEQVGDAETHALLTGLGVDLIQGHHIAMPQPLA 576


>gi|78358062|ref|YP_389511.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220467|gb|ABB39816.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 566

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 109/464 (23%), Positives = 208/464 (44%), Gaps = 20/464 (4%)

Query: 507 GDILRYIGIANDITEQKK---------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           G IL    +   IT Q           +   +   A  D LTG+PNR+  ++ L   +  
Sbjct: 106 GTILFLGAVFVFITAQVTSTGLHTALSANASLQHQAVHDYLTGLPNRRLIMELLGEAMQT 165

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +         ++ +DI  +K++N      VGD +L  + +R+   +K  D+ ARL G+ F
Sbjct: 166 APAG----YALVFVDIMNFKRVNISFAHYVGDQILEQVGQRLQTSMKPGDVAARLGGDDF 221

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L    +  +      A++ ++  P    + + ++    G    T+       ++  A
Sbjct: 222 AILLR-TGSPREAVQRTQAVKAALKQPYFSGDIQFSLDCGFGLYMGTAQDTRPEHVIAKA 280

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDE-E 734
             AM  AK RG N +  F  S     ++ I  +     ++ N + +LV+ P   L  + E
Sbjct: 281 NTAMMRAKQRGRNRIAVFSRSMQDKAQLTIHFENQFRRSLRNGDFFLVFQPQYALTPQPE 340

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-PP 793
           ++G E L++W+HP+ G +S +EF+ +AE   +I  ++ ++L    R     R        
Sbjct: 341 LIGFETLVRWNHPERGIVSPAEFVPMAETTGLILHLDRYVLREACRIWGEMRASLPACRA 400

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +   +N+++  +        ++  ++        I L  +ES +M NPE +   +  LR 
Sbjct: 401 LHFSVNLSASHMDRPTFIRKLEKTLAAFEMPHESIILELTESALMSNPETAARKMQYLRS 460

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           IG+ + LDDFGT  S L+YL   P   +K + S +      E  + ++R+II +A  +  
Sbjct: 461 IGLHVALDDFGTGYSSLAYLTRFPCYCLKIDKSFVDNITTDENSVRVVRAIIHLAHGLGM 520

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +A+ +     + +L  MGCD +Q   +  P+   ++  ++  
Sbjct: 521 VALAEGVETPEQLAQLQDMGCDQVQGYLLGKPMPQAALRDVIAR 564


>gi|215430239|ref|ZP_03428158.1| hypothetical protein MtubE_06094 [Mycobacterium tuberculosis
           EAS054]
 gi|289753436|ref|ZP_06512814.1| GGDEF protein [Mycobacterium tuberculosis EAS054]
 gi|289694023|gb|EFD61452.1| GGDEF protein [Mycobacterium tuberculosis EAS054]
          Length = 623

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 215/450 (47%), Gaps = 8/450 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +  +  +   +   A  D+LTG+ NR++ L  L   L             + +D+D+
Sbjct: 167 FAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLA---PGQPGPVAALFLDLDR 223

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K IND LG A GD  +    +RIG+ L    ++ARL G+ F +I  S  ++      A 
Sbjct: 224 LKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAE 283

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +R  +   + +    +T T SIG AS T  + T S++L+ A+ A   AKH GG+ V  F
Sbjct: 284 RLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIF 343

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S  +   I+  L   +E+  L LVY P + L   +IVG EAL++W HP  G ++
Sbjct: 344 TADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLA 403

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE + +   ++ ++L R   +   W+         + IN+++  L+     + 
Sbjct: 404 PGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDALLRINVSAGQLVTGGFVDF 463

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I +     S + L  +E+VV+ +   +R  L RL+++G+ + +DDFGT  S +S L
Sbjct: 464 VADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLL 523

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K + + +   G+    + I+R I+ +A+  +  ++A+ +  E   + L    
Sbjct: 524 QTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQR 583

Query: 932 CDYIQDSHVASPLGFNSILKLL-KERFPLV 960
           C   Q    + P+   ++  +L   R P  
Sbjct: 584 CYRAQGVLFSRPVPGEAMRHMLSARRLPPT 613


>gi|262173484|ref|ZP_06041161.1| EAL domain protein [Vibrio mimicus MB-451]
 gi|261890842|gb|EEY36829.1| EAL domain protein [Vibrio mimicus MB-451]
          Length = 527

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 214/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K ++    ++  D LT + NR++F  +L  I      +   +  ++ +D+D +K+IND L
Sbjct: 90  KQIKRYRRDSLTDFLTSLGNRKAFQIQLHQI---QKQNQASQYALIQVDLDDFKQINDSL 146

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF-AIAMRKSIA 642
           G   GD +L +L RR+  L      + RLS + F ++L  E+   +  +     +  ++ 
Sbjct: 147 GHQQGDKLLEALGRRLKTLQNQERKIYRLSSDEFALVLHYEDKLHQAIELTIEQLSNTLN 206

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
               L +R  +VT SIG A    +        +NA++A+  AK  G N V  F       
Sbjct: 207 QEFRLGKRTYSVTISIGVALLEDALNDVDIWCRNADIAIIKAKSCGKNCVRWFDDELLGE 266

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ +L +A+E+S+L + Y P + L   +IVG+EAL++W HP+ G I+  +F+ I
Sbjct: 267 TIRQFQIERELNIALEHSQLLMHYQPKVDLRTGQIVGVEALVRWQHPELGMINPGDFIEI 326

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  I  +++    R +  W +      + + +N+++   L +++   + + +  
Sbjct: 327 AEKTQQIIPIGRWVIYEACRQLNEWHNTYPF--LSMSVNVSNIQFLYDDIYSVIYSALET 384

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +E+ +M  P        RLR++GI + LDDFG   S L+YL  +P D 
Sbjct: 385 YPLPPHVLQLEITETTLMRYPHSVIQTCHRLRELGIQIALDDFGVAYSSLNYLKQLPIDV 444

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +  S  ++    I+R+II +  N+   + A+ +  E  +  L   GCD  Q  
Sbjct: 445 IKIDRSFVDSSVDSQVGKMIIRTIIQLGHNLGKVVTAEGVDSEEKLAILKAEGCDKYQGF 504

Query: 939 HVASPLGFNSILKLL 953
             + P+  N I  LL
Sbjct: 505 LFSRPVPPNEIEALL 519


>gi|221126747|ref|XP_002164698.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 396

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/397 (26%), Positives = 203/397 (51%), Gaps = 5/397 (1%)

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           +      ++ ID+D +K IND LG A GD +LV +  R+  + +  D++ARL G+ F I+
Sbjct: 3   EGATEAALIYIDLDHFKDINDTLGHAAGDALLVQVAERLRAITRSSDMVARLGGDEFLIL 62

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           ++S N   ++      +  ++A PI++   E+ VT S+G + +         +L+NA+LA
Sbjct: 63  MVSHNIREEVDLVRRRLSSTVAQPIHIHGAEVIVTPSVGVSFYPEHGKELDTLLRNADLA 122

Query: 681 MYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N +  F   ++     R+ ++ +L  A+   E  L Y P + +   ++ G 
Sbjct: 123 MYSAKESGRNALNIFESPMAQRVQQRLELETELRHALTRQEFELYYQPRVDVATGQVRGA 182

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W+HP+ G +    F+   E   MI A+  ++ E+ AR  + W  +     + I +
Sbjct: 183 EALIRWNHPQRGLVGPDAFIPTCESTGMINALGDWVFEQAARQQVQWAREGLD--LKISV 240

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ +   D EL   +  +++ T   P+R++L  +ES+++G    +   L  LR++G S+
Sbjct: 241 NLSPRQFRDPELLNRLARIVTATAAQPARLELELTESMLLGVAPHTHETLDDLRRMGFSI 300

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918
           ++DDFGT  S L+YL   P   +K + + +    E    +   I+ M + ++  I+A+ +
Sbjct: 301 SVDDFGTGYSNLAYLNRFPIQVLKVDKTFVQDI-EANRPVAELIVSMCRLMQLHIVAEGV 359

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                ++ +   G    Q    A PL   + ++ ++ 
Sbjct: 360 ETPAQLEWVQTQGIGQYQGYLFAKPLPATAFVERVRA 396


>gi|319779762|ref|YP_004139238.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317165650|gb|ADV09188.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 514

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 107/417 (25%), Positives = 196/417 (47%), Gaps = 10/417 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+  R + + ++      ++        ++ IDID++K+IND +G + GD+++ 
Sbjct: 84  HFDKLTGLVARPAMVGKIAEAACATSRTGEPMF-LIDIDIDRFKQINDAIGYSQGDELIR 142

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + T+R+   +    ++ R+    F I+L     +  +      +   +  P +L     +
Sbjct: 143 AFTKRLKTCVPPRALIGRIGAGEFAILLPDNQVAGSLESTIERLIDEMMEPYDLGTHLQS 202

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711
           V+ S+G  +     +    +L+ + LA+ +A+  G  +   F          R  I+ +L
Sbjct: 203 VSLSVGIVAMPKDGVDPVLILRRSNLALQNARASGVGNWSVFHAEMGRVADHRQWIESEL 262

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A E  +  L Y P + L    IVG EALI+W HP+ G I   EF+ IAEE  MI  I 
Sbjct: 263 HTAFERGDFDLHYQPQLDLPTGRIVGYEALIRWRHPERGMIPPMEFIPIAEETGMIGPIG 322

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +   D     D       F+ +NI+    +  +    ++  ++ T   PSR++L 
Sbjct: 323 EWVLRKACSDARHLPD-----DCFVAVNISPVQFMTKDFVGIVRDTMTSTGIKPSRLELE 377

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+ +M + +R+  +L  L  IGIS+ +DDFGT  S LSYL    F  +K + S ++  
Sbjct: 378 VTETAMMQDRDRAAAILKELADIGISVAVDDFGTGYSNLSYLIDFSFGKLKIDRSFVSRL 437

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  A++ +I+ +++ +  +IIA+ +  E     L   GC+ +Q      P   
Sbjct: 438 DTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGCEVVQGYLYGRPAPL 494


>gi|91223870|ref|ZP_01259134.1| hypothetical protein V12G01_19037 [Vibrio alginolyticus 12G01]
 gi|91191362|gb|EAS77627.1| hypothetical protein V12G01_19037 [Vibrio alginolyticus 12G01]
          Length = 718

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 104/452 (23%), Positives = 218/452 (48%), Gaps = 18/452 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A+ D LT +PNR+  L  + T +       +    V+ ID+D +K IND  
Sbjct: 267 RYTSRVEFMAYHDILTSLPNREKLLIDIQTQITD---HKSPSLAVVFIDLDDFKHINDNY 323

Query: 584 GIAVGDDVLVSLTRRIGELLKFP--------DILARLSGNRFGIILISENNSLKIADFAI 635
           G  +GD +L  L   +   L            I++R+  + F +     +++ +  + A 
Sbjct: 324 GHNIGDKLLGHLASELQGRLPSYFKPLYRLSTIVSRVGADEFVLAFP-CSDNHEAREKAN 382

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  P +L E +I +TAS+G A +      +  +L+ + LA   +K RG + +  +
Sbjct: 383 DIHRQLLSPFSLEENDIQITASLGIAVYPEFGSNAESLLQLSSLAAQESKRRGKDIMTIY 442

Query: 696 RVSSFRSDRVMI--KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
             +   + +  +  + +L  +V + S+  L Y P   L    ++G+EAL++W+HP+ G I
Sbjct: 443 DSTFDETIKQRLYIERELRRSVRDLSQFELWYQPQFDLKTYRLIGVEALVRWNHPEKGYI 502

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ IAE+  +I  +   ++E        W +        I +N++ + +   +L +
Sbjct: 503 SPESFIPIAEQSDLILELGEHIIETAVAQRAMWAEHFG-TDFHIALNLSPRQIYRQDLSQ 561

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                + +   +P  I +  +ES+ + + E+++ +L +L+ IG+ + LDDFGT  S L+Y
Sbjct: 562 LFSKYLRRHDVAPQTIHVEVTESLFIDDTEKAQYVLKKLQSIGVEVWLDDFGTGYSALAY 621

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++ FD +K + S +    +     +++R+I+ MA N+   ++A+ +  +  +  +  +
Sbjct: 622 LQHMAFDGLKIDRSFIAQIRKSDQDDSLVRAIVSMAHNLRMKVVAEGVETQTQLTRMESL 681

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            CD +Q   +  P+    ++    +R    +N
Sbjct: 682 HCDIVQGFFLGRPVPAEELIAFEYQRGSGAQN 713


>gi|218528358|ref|YP_002419174.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218520661|gb|ACK81246.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 541

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 217/439 (49%), Gaps = 12/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + +     A  D LTG+ NR+ F+D +  +       D  R  V++ID+D++K +N
Sbjct: 77  ERDAAAKEAEAIARHDALTGLANRRLFVDAVDDLCRRIEARD--RAAVLLIDLDRFKPVN 134

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G A G+ VL ++  R+  LL    I ARL G+ F +++    +   +   A  +  S
Sbjct: 135 DLYGHAAGNAVLCAVADRLEGLLPADGIAARLGGDEFALLVPFTGSIESLKRLAQQVIAS 194

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +  P+      + + A+IG A        +  +L  A+LAMY  K  G      F   + 
Sbjct: 195 LVAPVAWNGGSVKIGATIGIALVAVD-RDADAILHAADLAMYQGKREGRGTYRVFESSMD 253

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   +R  ++ +L  A+E+  +   Y P++ L   + VGLE L +W HP  G +   +F+
Sbjct: 254 TELRERAALEAELREAIEHGAIEPFYQPVVSLPRRDCVGLEVLARWRHPTRGLLGPDQFI 313

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  MI  ++  +L +   D  +W          + INIA + + D +L + + A++
Sbjct: 314 PIAEETGMIADLSYHLLRQACLDAKAWPSHLL-----LAINIAPQQVQDRDLAQRILAIL 368

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T +SP R+++  +E+ ++ + E +R  L  L+ +G+ + LDDFGT  S L +L  + F
Sbjct: 369 AETGFSPRRLEVEITETALVQDLEAARTTLTSLQNLGVRIALDDFGTGYSSLYHLRELKF 428

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +     +E+R  ++ +II +  ++     A+ I  +  +  L+  GC + Q
Sbjct: 429 DKLKIDRSYVDTITMSEERAKLVDAIIKLGSSLGLVTTAEGIETDASVAWLSGQGCSFGQ 488

Query: 937 DSHVASPLGFNSILKLLKE 955
                 P+    +  +L  
Sbjct: 489 GYLFGKPMPREEVHGMLSA 507


>gi|297585433|ref|YP_003701213.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297143890|gb|ADI00648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 692

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/553 (20%), Positives = 232/553 (41%), Gaps = 14/553 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFR 465
             +++    D V   +     +        I G  S    G     L   +H   +  FR
Sbjct: 149 FEMSLRNISDGVMITEQDGTILWVNRAFEVITGYTSEEAIGNNPRLLNAGVHS--KAFFR 206

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +  +     RG  + +   R      +   + +     S  + L YI + +++++    
Sbjct: 207 QMWKAL--EDRGVWRGDIWNRRKSGSVYRQRLSVSKFRGSADERL-YIAVIHELSDLDDM 263

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +      D +TG+PNR      +   ++ S    + R  V+ I+I  + ++ND LG 
Sbjct: 264 QDKLTILETTDPVTGLPNRPEMRKLIERKVNHSD-YISDRFAVLTIEITNFNEMNDTLGH 322

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L+ + +R+  L+     + R+ G+ F  +++ +  +  +  F   +   +  P 
Sbjct: 323 KVGDRLLIDIAKRLMLLVNDESQVGRIGGDDF--LIVHDQQAGDLEPFLEKLVTCLEKPF 380

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            + + E+ +  SIG + +      +  +   + +AM HA+    +H+  F        + 
Sbjct: 381 FVDDSELFIHPSIGVSRFPEDCEETQNLFMTSNVAMTHARESVVDHISYFSTEKAEELKR 440

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I   L  A +  E  L Y PI+ L   E+   EALI+W +   G +S  EF+ IAE+
Sbjct: 441 RFEIANHLKGAGKREEWALHYQPIVDLESGELKKAEALIRWSNKDLGIVSPGEFIPIAEK 500

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I AI  ++L+ + R +I W  +  +  + + +N++ + L      E +   +     
Sbjct: 501 TGQIIAIGEWVLDEVFRQLIKWGMEGLVI-VPVSVNLSIRQLEQENFAESLLKRMRDWRI 559

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               +++  +ES+  GN  R    L RL + G+ + +DDFG   S  S+L  +    +K 
Sbjct: 560 PADYLQVEITESMTKGNIGRIMKNLNRLTRAGVRVAIDDFGKGYSSFSHLTELGLSELKV 619

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +    ++     +LR+++ +A  +    +A+ +  +   +++  +G    Q  + A
Sbjct: 620 DQHFIKAMRQETETEKLLRAMLLVADGLGLDTVAEGVETDFHHEKVKALGFTLGQGYYYA 679

Query: 942 SPLGFNSILKLLK 954
            PL        L+
Sbjct: 680 KPLPEKDFRNWLE 692


>gi|113970392|ref|YP_734185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. MR-4]
 gi|113885076|gb|ABI39128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. MR-4]
          Length = 727

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/583 (21%), Positives = 245/583 (42%), Gaps = 26/583 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   ER SL   A   S  +    ++  ++V       A 
Sbjct: 150 IHLACQMADQLALTLATKHSYDKEERLSLFRCATEQSRQMSMLINLHTEKVEYVNQAHAE 209

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I GLA     G     L +      +     L       + +   E +   AD   +W+ 
Sbjct: 210 ITGLAREKSIGTNLRELSFF-KQHNELAELTLAQIFRGEQAK--GEVQFNRADGSRYWLK 266

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + T++      +   A++ +LTG+ NR  F   L     
Sbjct: 267 YVVSQFITDRGNHYALV-SGEESTDEHNYKAELERLAWRCSLTGLNNRSHFNRVLEK--- 322

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                   +  ++++D+  +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 323 ------TNKGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLKHFSEINKATEIARVGS 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + +AMPI +   +I    ++      +S       L
Sbjct: 377 DEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQIEPKPALAVVDI-ASVANLFAPL 435

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 436 TCADIAVQYAKKKKGTAIQVFNSALLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 495

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +  +G EALI+W HPK G +    F+ IAE+  MI AI  ++LE   R +  W+      
Sbjct: 496 QTYIGAEALIRWHHPKRGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNAD- 554

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   + LL   L 
Sbjct: 555 -LSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELA 613

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 614 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTISRESQEIVSAIIAMASALN 673

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ A+ +        L +  C   Q    +  L      + L
Sbjct: 674 ISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFL 716


>gi|241206359|ref|YP_002977455.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860249|gb|ACS57916.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 767

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/725 (20%), Positives = 285/725 (39%), Gaps = 45/725 (6%)

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHA------------KVGYITFSGIACIAILFCMSFY 302
               +  ++ L++F    + + ++              +   I  +G AC   L  ++  
Sbjct: 49  FVYILLAAAFLLVFCVRMVIFRQFDRVDKESLSHAGIERWERILVAGAACTTTLLGIASG 108

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA--WILIFIWFIGLWMAITK 360
           Y +     +   LA I +     +   G     R  + +      L  I    L +   +
Sbjct: 109 YAIFVVHDSFAELACIAVTMATMVSVVGRNYGSRLAVDLQTFSCCLPMIVCSLLALDFYR 168

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L +  + P  +    +   +  F     +       + I    +R   A+      +  
Sbjct: 169 GLLSIFLIPFWLTTRAMANGVREF-----LYENVIARREITIIADRFDTALNNMPHGLVM 223

Query: 421 WDIVRDRVTTTPDIATILGL-ASGSM----HGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            D              +L + A   +     G +  +       D      IL       
Sbjct: 224 VDAENRIQVVNRKACELLKIGAPDRLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVA 283

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G L     +   +     +         ++G     + I  D++ + K+ + I+     
Sbjct: 284 EGNLSRTL-IHFPEG--LSLEFSAS--RRADG---GAVLIFEDVSSRVKAEQKIMHMVRF 335

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR+ F   +   L             MV+DID++K +ND+ G   GD +L ++
Sbjct: 336 DALTGLPNREYFGQLVQDYLAKHQRKSG-PLGFMVLDIDEFKHVNDMRGHVTGDHLLCAI 394

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             RI +      IL RL G++F +          +      +  +I     + E    V+
Sbjct: 395 AARIKQAS-GNAILGRLMGDQFILFFPHAKEQASLDVEIRRVHAAIQGNYAVDELTFLVS 453

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
            S G+A   S+     E    A+LA++ +K R  GG       +     ++  +K DL  
Sbjct: 454 LSAGYAILESAAFAMDEWSVKADLALFESKSRFKGGISGFEREMDGRYIEQQKLKADLRD 513

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           AV    L+L + P+ R     I   EAL +W HP+ G+I    F+ +AE++ +I  I  F
Sbjct: 514 AVSAQALHLAFQPMFRSDGSRIECAEALARWVHPEKGSIPPDVFIRLAEDMGIISDITRF 573

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L +   + ++W +      I + +N++++DL D ++   +   ++ +    +R+ L  +
Sbjct: 574 VLFKACSECMNWPEH-----IAVSVNLSARDLRDADILAVVAEALAHSGLDAARLHLEVT 628

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES ++  P   R +L  LR  GI++ +DDFGT  S LSYL  +P D VK + S +    E
Sbjct: 629 ESCLIDEPAAVRAILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVE 688

Query: 894 KRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG-CDYIQDSHVASPLGFNSIL 950
                 +LR  + +A+ +   I+ + +  E  +  L +    D +Q    + P+   +I 
Sbjct: 689 DNRRLKLLRGTVHLARELGLKIVIEGVETEEQLALLNKHRSADLVQGYVFSPPVPSQNIP 748

Query: 951 KLLKE 955
            LL++
Sbjct: 749 -LLQQ 752


>gi|89056640|ref|YP_512091.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88866189|gb|ABD57066.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 680

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 216/441 (48%), Gaps = 12/441 (2%)

Query: 521 EQKKSLEGILCNAF---QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           E K   E +L  A     D+LTGIPNR    + L                ++ ID+D +K
Sbjct: 238 ESKLEDEAMLKLAHAASHDHLTGIPNRLWLSEWLEKFGRDKIAGRRHTIAIIAIDLDNFK 297

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +IND+ G A GD VL ++  R+  + K  + +AR  G+ F  I    +   ++ DFA  +
Sbjct: 298 EINDLRGHAAGDLVLRTVASRLVAVCKDDEDVARSGGDEFTAIKTGFSRLDEVIDFANRL 357

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
           R  +  P+        +  S+G A+       + ++++ A+ AMY AK     ++  +  
Sbjct: 358 RGVLEAPVEAAAYLAQLDGSLGIATSLKDGENTDDLIQKADFAMYRAKASTDTNICVYDA 417

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +     +R+M+  DL  A+ N E  LVY     L + E +G EAL++W HPK G +   
Sbjct: 418 EMDEQNRERIMLVYDLRSAICNEEFELVYQLQHDLSNLEPIGCEALLRWRHPKRGLVPPD 477

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAEE  +I+ I  ++L     +  SW       P+ + +N+A + L      E + 
Sbjct: 478 RFIPIAEETGIIQDIGFWVLRTTCIEAASW-----TQPLSLAVNVAPQQLTQPTFLENLA 532

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +++++   P R++L  +E+ V+ +   +  ++ +++ +G+ + +DDFGT  S L+ L  
Sbjct: 533 DVLAESGLEPRRLELEVTEASVISDQAFTLEIIKKIKAMGVRIAMDDFGTGYSSLATLQM 592

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +T      +R AI+R+ + +  ++   ++A+ +  E ++  L   GC 
Sbjct: 593 FPFDKIKIDRSFITDVHDDPQRAAIVRATLLLGSSLGIPVLAEGVEQEKELHFLQSEGCS 652

Query: 934 YIQDSHVASPLGFNSILKLLK 954
           ++Q  +   PL    +  ++ 
Sbjct: 653 FVQGYYFGRPLSLEDLRAVVS 673


>gi|323498523|ref|ZP_08103516.1| signal transduction protein [Vibrio sinaloensis DSM 21326]
 gi|323316412|gb|EGA69430.1| signal transduction protein [Vibrio sinaloensis DSM 21326]
          Length = 757

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 216/431 (50%), Gaps = 7/431 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A +DNLTG+ NR +    +   L      ++   +++ ID+D++K IND +G  VGD +
Sbjct: 323 QAIKDNLTGLFNRTALTKEIENRLTRLERGESQGFSILFIDLDRFKVINDSMGHVVGDKL 382

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +R+    +  DI  R  G+ F I L    +   ++       + ++ P  L  + 
Sbjct: 383 LQLVAQRLIANCRNHDISFRFGGDEFVICLPEFVDRGILSKVCQRYTQLLSQPYILDGQA 442

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
             V ASIG +  T    + +E+L+ A+ AMY AK+   + V  F  + F+  +    +++
Sbjct: 443 CYVGASIGISVVTDHSRSMAEILREADTAMYQAKNSSHDKVVFFHETMFQKAKQRFTLEQ 502

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   +L +VY PI     + IVG E+LI+W HP++G +S  +F+ IAEE  +I  
Sbjct: 503 ELTSALALKQLSVVYQPIYATRSDAIVGFESLIRWHHPEFGIVSPQDFIPIAEETGLIFT 562

Query: 770 INLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           I  ++     + +   W + +      I IN++++      +   +++L+S+  +    +
Sbjct: 563 IGDWVANESCKTLHRLWHNPSITDMPRININVSARQFESEHIYHTLKSLLSQYDFPAHLL 622

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES+++ + E +   L R++ +G+ L LDDFGT  S LS L   P D +K + S +
Sbjct: 623 GVEITESMLLSD-ECNAEQLQRIKDLGVVLYLDDFGTGYSSLSVLNDYPVDVIKVDRSFV 681

Query: 889 TGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +       K   + R+II MA  I   ++A+ +     +  LT+  C YIQ    + P+ 
Sbjct: 682 SRIALGETKADNLCRAIINMAHTINLKVVAEGVETPEQLAILTQYQCHYIQGYLKSKPVT 741

Query: 946 FNSILKLLKER 956
              I  +L E+
Sbjct: 742 VCRIPTMLTEQ 752


>gi|120598959|ref|YP_963533.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|146292956|ref|YP_001183380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|120559052|gb|ABM24979.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|145564646|gb|ABP75581.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
          Length = 727

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/619 (20%), Positives = 246/619 (39%), Gaps = 31/619 (5%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGER 406
               + + + I   L+  +               I     +   LA    ++  +   ER
Sbjct: 116 VFSCLDVGIRINGHLEGVLCIERTQVTPHWHDSEIHLACQMADQLALTLATKHAYDKEER 175

Query: 407 QSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYI--HIND 460
            SL   A   S  +    ++  ++V         I GL      G     L +   H   
Sbjct: 176 LSLFRSATEQSQQMSMLINLHTEKVEYVNQAHGEITGLTREQSIGSHLRELTFFKQHPQ- 234

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                  L       + +   E + R AD  ++W+   +       G+    +    + T
Sbjct: 235 --LAEETLAQIFRGEQAK--GEVQFRRADGSYYWLKYVVSQFITERGNHYALV-SGEEST 289

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++      +   A++ +LTG+ NR  F   L           +L           +K+ N
Sbjct: 290 DEHNYKIELERLAWRCSLTGLHNRSHFNRVLERTSKGLLLLVDLVG---------FKRFN 340

Query: 581 DVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           D  G   GD +L+ + RR+     +     +AR+  + F ++L  +N    +  F+  + 
Sbjct: 341 DTYGHEHGDSLLIEIARRLKHFSEINKATEIARVGSDEFVVLLTDDNAVYDLDYFSTRLY 400

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++ P+ +   +I    ++      +S       L  A++A+ +AK + G  ++ F  +
Sbjct: 401 QHLSAPMLIGREQIEPKPALAVVDI-ASVANLFAPLTCADIAVQYAKKKKGTSIQVFNST 459

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             S   +   I+ DL  A+   +  L Y P+  L  +  +G EALI+W HPK G +    
Sbjct: 460 LLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLGLQTYIGAEALIRWHHPKKGVLYPGA 519

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  MI AI  ++LE   R +  W+       + + +N++++      L E +  
Sbjct: 520 FIDIAEQSGMINAIGSWVLEAACRQLNLWQHHNAD--LTMHVNVSARQFFSGNLYEQVWQ 577

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+++    P  + L  +E+ +MG+   + LL   L ++G+ L +DDFGT  S + YL   
Sbjct: 578 LLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQF 637

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S ++    + +   I+ +II MA  +  ++ A+ +        L +  C  
Sbjct: 638 PISKLKIDRSFISDLTISRESREIVSAIIAMANALNISLTAEGVETIEQEAFLAKSCCHQ 697

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    +  L      + L
Sbjct: 698 AQGYLYSPALREPEFAQFL 716


>gi|117920604|ref|YP_869796.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. ANA-3]
 gi|117612936|gb|ABK48390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. ANA-3]
          Length = 727

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/582 (21%), Positives = 241/582 (41%), Gaps = 26/582 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   ER SL   A   S  +    ++  ++V         
Sbjct: 150 IHLACQMADQLALTLATKHTYDKEERLSLFRCATEQSRQMSMLINLHTEKVEYVNQAHEE 209

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I GLA     G     L +            L       + +   E +   AD   +W+ 
Sbjct: 210 ITGLAREKSIGANLRELSFF-KQHNQLAEQTLAQIFRGEQAK--GEVQFNRADGSRYWLK 266

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + T++      +   A++ +LTG+ NR  F   L     
Sbjct: 267 YVVSQFITDRGNHYALV-SGEESTDEHNYKAELERLAWRCSLTGLNNRSHFNRVLER--- 322

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                      ++++D+  +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 323 ------TTNGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLKHFSEINKATEIARVGS 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + +AMPI +   +I    ++      +S       L
Sbjct: 377 DEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQIEPKPALAVVDI-ASVANLFAPL 435

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 436 TCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 495

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +  +G EALI+W HPK G +    F+ IAE+  MI AI  ++LE   R +  W+      
Sbjct: 496 KTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNAD- 554

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   + LL   L 
Sbjct: 555 -LSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELA 613

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 614 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLAISRESQEIVSAIIAMASALN 673

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++ A+ +        L +  C   Q    +  L      + 
Sbjct: 674 ISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQF 715


>gi|171854883|dbj|BAG16625.1| cyclase/phosphodiesterase homolog [Azotobacter vinelandii]
          Length = 627

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 205/439 (46%), Gaps = 7/439 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A+ D LTG+PNRQ  L  L  IL  +      R  V+ + +D +K IN+
Sbjct: 182 RHEAEHSLQRMAYYDVLTGLPNRQHLLRLLGQILLDARRHKR-RVAVLCVGLDDFKSINE 240

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD++L++L  R+      P  LARL G+RF ++    +     A+ A  +   +
Sbjct: 241 QFCYHFGDELLLALADRLRSHDTAPGALARLGGDRFVLVRADIDEPYMAAELAQGILDDL 300

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
            +P    ++++ + ASIG   +     +  ++L+ AE  M  AK   G        V   
Sbjct: 301 VVPFRQEQQDVHLHASIGITLYPEDGRSPEKLLQKAEQTMALAKRSHGRYQFYIASVDRE 360

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  +++DL  A+   EL L+Y P +   ++ + G+EAL++W HP+ G +   +F+L+
Sbjct: 361 MRHRRELEKDLHEALARGELQLLYQPQLNYRNQRVEGVEALLRWRHPRHGLVPPDQFVLL 420

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I  I  ++LE+  R +  W DQ     + + +N+++  L  + L   +  L+  
Sbjct: 421 AEHSGSIIPIGEWVLEQACRQLREWHDQGFCE-LHMAVNLSAVQLHHDGLPRLIDRLLRT 479

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +E+ +M + + +   L  LR+ G  + +DDFGT  S LSYL  +P D 
Sbjct: 480 YRLPAGSLELEVTETSLMEDIQVAARHLRSLRRCGARIAIDDFGTGYSSLSYLKSLPLDK 539

Query: 881 VKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +K + S +             I+R+II +A+++   + A+ +        L    C   Q
Sbjct: 540 IKIDKSFVLDLLNDDDHDAGTIVRTIIQLARSLGKQVTAEGVETAAQEAYLVSQDCHEGQ 599

Query: 937 DSHVASPLGFNSILKLLKE 955
               + PL    +   ++ 
Sbjct: 600 GYLYSKPLPPMELAAFIRR 618


>gi|167579205|ref|ZP_02372079.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis TXDOH]
          Length = 872

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 244/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARRAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG ++ +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYSAAACVGAPVSSVLMLLDKETGQAVDIVDEFWARDERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDLS-ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L  + ++ D     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTTSSKDRADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+E     L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALETDGFRLYV 644

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTRPDSRTPERAEVLLRMTDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRAIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELGMLRELGIDFCQGYFFAQPSP 866


>gi|253996879|ref|YP_003048943.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylotenera mobilis JLW8]
 gi|253983558|gb|ACT48416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylotenera mobilis JLW8]
          Length = 944

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/682 (18%), Positives = 254/682 (37%), Gaps = 26/682 (3%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           +      +       + I    +       +++ R+    I  ++    IY  +    + 
Sbjct: 268 FFPIEHKLVNVPAMVVVIENVTTQVLETHESTLQRLKFGFIFTFFMLLAIYFLLNTPLKR 327

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
           +      I          +    ++  + +    V  L    + +   +           
Sbjct: 328 ITDAVKAIPFLGERQFEAVRAQIKIRKNPVLLDEVDRLAEAALKLTDRLQSLEKDASLHQ 387

Query: 398 QGIFSDGERQSLA-------VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
             I     R + A       +  +  ++   D      +       +LG    ++ G   
Sbjct: 388 SEILDMLGRITQANAFSERILDTAQVVIVTQDGNGKVTSINHYGEQLLGWDERNLQGKSL 447

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD---NQFHWMIIRIRPMSNSNG 507
                     R   R +    +        +E  +        +  W   R+      +G
Sbjct: 448 IDA-LEKPGGRGQLRQVYQGIIANSVDTHYHECTMLCNHEVKREIAWHHSRM------DG 500

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           + ++ + +  DIT +K+S E  L  A  D LTG+ NRQ F+  +   L            
Sbjct: 501 EQVQILSVGVDITLRKRSEEKSLYLAEHDQLTGLINRQRFMQEIEAALVRLNGTSACE-A 559

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D +K IND+ G   GD VL ++   +  +    D LARL G+  GI++   +  
Sbjct: 560 LLYLDLDGFKYINDISGHTAGDMVLRTVADILSNICDTQDTLARLGGDEMGILVRDCDLP 619

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             I+      R+   +    L  +  +TASIG  + +++   +  +L NA++AMY AK  
Sbjct: 620 RAISIAEEINRQLGEIKYPGLAGDHHITASIGIVAVSANNHDAKRLLANADIAMYQAKLT 679

Query: 688 GGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           G   +  F        ++      ++ +  A+      + Y PI+ +    I   EAL++
Sbjct: 680 GSARLHVFSEGEHLQQKLEQKVLWEDRIKQALREQSFVMQYQPILDIHQNVISHYEALVR 739

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   +   EF+  AE   +IK I+ +++  + +       +       + IN++  
Sbjct: 740 MVDENGAMVPPGEFIEFAERSGLIKQIDHYVVRTVIKRWAELLAEGKDR--KVAINLSGH 797

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D  +   +Q+L  +    PS I    +E+  + +   ++  +  +R +G + +LDDF
Sbjct: 798 SMNDENMLTLLQSLFLQHPELPSHIIFEITETAAVADFATAQTFIETIRALGCAFSLDDF 857

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   S   Y+ + P D VK +GS +     +      +R++  +A+      +A+ +  +
Sbjct: 858 GVGFSSFYYVKHFPVDYVKIDGSFIRNLADSTDDQIFVRALTEVARGFGKRTVAEFVGDQ 917

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
             +  L   G DY Q   +  P
Sbjct: 918 RCLTLLRSYGVDYAQGYFIGKP 939


>gi|50086105|ref|YP_047615.1| hypothetical protein ACIAD3099 [Acinetobacter sp. ADP1]
 gi|49532081|emb|CAG69793.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 681

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 202/433 (46%), Gaps = 9/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   A  DNLT +PNR   +D +      +   D  +   + +D+D++K +ND  
Sbjct: 253 KLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDE-KIAFLYLDLDRFKSVNDAF 311

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+ +  RI + L     L R+ G+ F II+        IA  A  + + +  
Sbjct: 312 GHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQ-IAQIAEDVLRQVQE 370

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +  +EI ++ASIG A +        ++L NA++AM  AK +G N    F  +S  ++
Sbjct: 371 AYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYSIFNYTSEHNE 430

Query: 704 RVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +  DL  AVE  +  L Y       +  I G+EALI+W HP +G +S   F+  
Sbjct: 431 TRSQSKLINDLYKAVEEQQFVLFYQAKYA-ANLNICGVEALIRWQHPTFGLLSPHMFIDG 489

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +  + LE+  + I  W +        I +N+++    +  L   ++ LI K
Sbjct: 490 AEKTGLIIPMGYWALEQACKQIQIW-EATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRK 548

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P+ + +  +ES  M + + S     ++R +GI + +DDFGT  S   YL  +P D 
Sbjct: 549 YQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDE 608

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +    E      IL SII +A  +   + A+ +  ++    L R+GC  +Q  
Sbjct: 609 LKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRLGCQQLQGY 668

Query: 939 HVASPLGFNSILK 951
            +  P+    +++
Sbjct: 669 LLGRPVPVEQLVQ 681


>gi|325122493|gb|ADY82016.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 696

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 122/572 (21%), Positives = 245/572 (42%), Gaps = 11/572 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +  + E Q+  +  S D +   ++              LG+        ++ WL  +
Sbjct: 126 QQNLQKNIEIQNQMLDISVDCIKVLNVDGTLSHMNKSGCLALGIPVDETEFGMK-WLELL 184

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             + R   R  L   +  +  R      +   D ++      + P+   NG+I + + ++
Sbjct: 185 PPHIRKRGRVALKKALQGKVARFAGMSCLPDQDPEY--WDNMLTPIHRENGEIGQILCVS 242

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  D      +++ID+D +
Sbjct: 243 RNVTQQHLAENQLRNMSERDELTGLYNRRSFKFQLKRTLSYSK-DTQTSVGLLLIDLDHF 301

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAI 635
           K IND LG + GD +L  L++R    +      +ARL G+ F +I+ + N+   + + A 
Sbjct: 302 KHINDTLGHSAGDHLLKVLSKRFSHCVDDEKCFVARLGGDEFAVIINNLNSENDVRELAA 361

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  PI  L   +    SIG A +    +  S +L  A++A++  K RG   +  +
Sbjct: 362 ILLQQLNHPITYLGNVLNGGMSIGCAIYPQDAVDQSGLLSCADMALHDLKARGRGGIRMY 421

Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +               + +  +   Y P + L    +VG EAL++W         
Sbjct: 422 DPCMMQMTETVASQLNLARQLIRHHTIQPYYQPKVDLNTHRVVGFEALLRWHTTSAQRGY 481

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++     ++  +   I   M  ++ RDI  W     + P+ + +N A  + L +   E 
Sbjct: 482 PAQIAEAFKDYNLASKIGETMQHQVLRDIAKWI-TLGITPLPVSLNAAPVEFLRDNYAER 540

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +   I++       I++  +E ++     E     L +L++ G+ + LDDFGT  S L++
Sbjct: 541 LLKKINQFQIPTHYIEVEVTEHMLGDRGSEYVIRALNKLKQHGVRIALDDFGTGFSSLTH 600

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +   P D++K + S +          AI+++I  +A N+   +IA+ I      + L + 
Sbjct: 601 IRDYPIDSLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAEGIETPEQEELLRQF 660

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           G    Q     S +    ++ +LK+  P +++
Sbjct: 661 GYSIGQGFLFESAIDATQVISILKQNQPYLES 692



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +       WL +I+  D D  +
Sbjct: 9   QKHFIVEQIPLPTWVSDENGLILYCNIECTE---YWLDTFSPLPEQWLDFIYPADLDEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR--IRPMSNSNGDILRYIGIA---NDIT 520
                 +  ++ R++ + R+  A NQ+ W  +        +S+     Y+      +DI 
Sbjct: 66  NRWLEAIRLQK-RIELKCRLLRAGNQYRWCKLSIQASKYRSSSQTSEWYVSFLDIDHDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQNLQKNIEIQ 136


>gi|226945829|ref|YP_002800902.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
 gi|226720756|gb|ACO79927.1| GGDEF domain-containing protein [Azotobacter vinelandii DJ]
          Length = 691

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 205/439 (46%), Gaps = 7/439 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++   +   A+ D LTG+PNRQ  L  L  IL  +      R  V+ + +D +K IN+
Sbjct: 246 RHEAEHSLQRMAYYDVLTGLPNRQHLLRLLGQILLDARRHKR-RVAVLCVGLDDFKSINE 304

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
                 GD++L++L  R+      P  LARL G+RF ++    +     A+ A  +   +
Sbjct: 305 QFCYHFGDELLLALADRLRSHDTAPGALARLGGDRFVLVRADIDEPYMAAELAQGILDDL 364

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
            +P    ++++ + ASIG   +     +  ++L+ AE  M  AK   G        V   
Sbjct: 365 VVPFRQEQQDVHLHASIGITLYPEDGRSPEKLLQKAEQTMALAKRSHGRYQFYIASVDRE 424

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  +++DL  A+   EL L+Y P +   ++ + G+EAL++W HP+ G +   +F+L+
Sbjct: 425 MRHRRELEKDLHEALARGELQLLYQPQLNYRNQRVEGVEALLRWRHPRHGLVPPDQFVLL 484

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I  I  ++LE+  R +  W DQ     + + +N+++  L  + L   +  L+  
Sbjct: 485 AEHSGSIIPIGEWVLEQACRQLREWHDQGFCE-LHMAVNLSAVQLHHDGLPRLIDRLLRT 543

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +E+ +M + + +   L  LR+ G  + +DDFGT  S LSYL  +P D 
Sbjct: 544 YRLPAGSLELEVTETSLMEDIQVAARHLRSLRRCGARIAIDDFGTGYSSLSYLKSLPLDK 603

Query: 881 VKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +K + S +             I+R+II +A+++   + A+ +        L    C   Q
Sbjct: 604 IKIDKSFVLDLLNDDDHDAGTIVRTIIQLARSLGKQVTAEGVETAAQEAYLVSQDCHEGQ 663

Query: 937 DSHVASPLGFNSILKLLKE 955
               + PL    +   ++ 
Sbjct: 664 GYLYSKPLPPMELAAFIRR 682


>gi|150397959|ref|YP_001328426.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Sinorhizobium medicae WSM419]
 gi|150029474|gb|ABR61591.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium medicae WSM419]
          Length = 788

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/769 (18%), Positives = 288/769 (37%), Gaps = 47/769 (6%)

Query: 209 FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIF 268
            Y+   SS+      +   +L +++       K  +      ++      +  +  ++ F
Sbjct: 12  IYLSFVSSLYHNRGMLVIGMLLHVATFLLVFLKTSDAFYLACIVAILFLWVLRNLDMMRF 71

Query: 269 LFMYLH------WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
               L         RW  +      +           +     +  +       + +   
Sbjct: 72  DRSDLSDADDAAVRRWENRYIAGGVAVALTCGAACAYA-----IAVTRDSFAQLACISVT 126

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
              +     + +     ++       +  +   +++       +    L   L   ++  
Sbjct: 127 LASLSPLVGRNFGSERAVLLLSSAACLPMMIAALSLGDPFMAALAFLILPFILSTRMMAN 186

Query: 383 GFTVIQHVLATGYFSQGIFSDGE------RQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
                         +  + S  +      +   A+      ++  D            A 
Sbjct: 187 NVRSFLSEKVLSARNDNLLSAEQIGTIASQFETALNSMTRGLFMLDRHSRVAVVNERAAE 246

Query: 437 ILGL-ASGSMHG-PIRNWLPY------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           +L L     + G PI + L        +     +   T L   +  RR R          
Sbjct: 247 LLRLGDKAELKGMPIDDVLERGARGMALDAEKSEYIATQLHLLIAGRRSRTLISI----- 301

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
             +  ++     P    NG++   + I  D+T    +   IL  A  D LTG+P+R  F 
Sbjct: 302 -AEDLFLEFAAYP--RENGEV---VLILEDMTAHVLAERQILYMARFDMLTGLPSRNHFA 355

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           + +   + + A   +     +++D+ +++ +ND  G   GD +L ++  R+  L     I
Sbjct: 356 ELVHDAMGVDAA-PDRDVGFLLLDVAEFRHVNDTRGHIAGDKLLKAIAVRLKSLAAAETI 414

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ARL G+ F +   +      + +    +   +            +    GF    +S  
Sbjct: 415 AARLMGDEFLVFFPNLPGRSDLKERICGLHAELQGTYVADGLRFEMAIDGGFVLVNASDF 474

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHP 726
              E+   A+LA+  AK RG     +F  +       R+ +K DL  AV    L L Y P
Sbjct: 475 RFEELQIKADLALSEAKKRGHGGCAAFEEAMEARYLDRLKLKVDLREAVAGRALDLAYQP 534

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           +       +   EAL +W HP+ G++    F+ +AEEL ++  +   ++ +  RD +SW 
Sbjct: 535 MFTPDGSRVESCEALTRWIHPERGSVPPPVFIQLAEELGLVTELTRLVVAQACRDCLSWP 594

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                P + + +N++  DL  +E+   +  ++ +T  +P R+ L  +ES +M +P R + 
Sbjct: 595 -----PEVAVSVNLSVLDLRGDEIVGVLTGILKETGLAPDRLHLEITESCLMADPARVQK 649

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIP 904
           +L +LR  G+++ +DDFGT  S LSYL  +P   +K + S +    E       L  I+ 
Sbjct: 650 VLHQLRAGGMTIAIDDFGTGYSSLSYLDSLPVSVIKIDRSFVHDIDEDSRHFKLLLGIVN 709

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKL 952
           +A+ +E  I+A+ +     ++ L    C D IQ    A+P+  +++  L
Sbjct: 710 LARALELKIVAEGVETPEQLQLLRERNCADLIQGFVFAAPMPASAVAAL 758


>gi|237729704|ref|ZP_04560185.1| GGDEF family protein [Citrobacter sp. 30_2]
 gi|226908310|gb|EEH94228.1| GGDEF family protein [Citrobacter sp. 30_2]
          Length = 730

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 212/467 (45%), Gaps = 22/467 (4%)

Query: 499 IRPMSNSNGDILRYIGIANDI----------TEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           I P  + + +I    G    +              +  + +   A  D+LTG+PNR SF 
Sbjct: 256 ITPYLDQDDEIGHLAGAIEKLRVAMKERGYLQRMHEMSQKMEHMAHHDSLTGLPNRVSFG 315

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             L   +     D+     +++ID+D +K +ND  G   GD++L+S+ +R+  LL   DI
Sbjct: 316 QALDKRVSEIHQDEK-PFNLLLIDLDNFKPVNDTFGHKAGDELLISVAQRLQLLLGPNDI 374

Query: 609 LARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            ARL G+ F I+   S+N   +    A  + ++++ P        +++ SIG  +     
Sbjct: 375 AARLGGDEFAILQHVSDNAIKEANRLAKRIIRALSTPFTWSTHTFSISCSIGITTAPYQG 434

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYH 725
             +S ++ NA+LAMY +KH G      F           +   +++   ++N E  L Y 
Sbjct: 435 NNTSTLMINADLAMYASKHHGRGCFHFFEDGMVMKHTHSLFINQEIIDGIDNKEFELHYQ 494

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PII L DE + G E+LI+W+HP  G I    F+ IAE   +I  +  +++ +       W
Sbjct: 495 PIINLEDESVYGYESLIRWNHPTKGLIYPDYFINIAENSGLIVRLGEWIIRQSCEAAAKW 554

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            ++     I + +NI++  L    L + ++  +  +  S  R+++  +ES  + +   + 
Sbjct: 555 PER-----IRVAVNISAYQLHSPGLVDVIKDALRISQLSAERLEIEITESEKL-DKSIAL 608

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSII 903
            +L  +R +GI + +DD GT  + L YL   PF  +K   +L+    +   +  ++  +I
Sbjct: 609 PVLQEIRSLGIEIAMDDLGTGYAALDYLLIYPFTRIKIARTLVDKLQQDNASQYLIVMLI 668

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             A     ++ A+ +        L  + C  +Q    + PL    +L
Sbjct: 669 QFAHKYNMSVTAEGVETAQQRDILRDIECQNVQGYFFSYPLREREVL 715


>gi|149186853|ref|ZP_01865163.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21]
 gi|148829520|gb|EDL47961.1| hypothetical protein ED21_25482 [Erythrobacter sp. SD-21]
          Length = 561

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 216/454 (47%), Gaps = 16/454 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           RY G+  +I   ++S       A  D+LTG  NR+S    L  +L   A  +      + 
Sbjct: 78  RYKGLTGEIEAHRRSEREARRLADYDDLTGCLNRRSLAAELEAMLAKGAGKNRALAA-IA 136

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SLK 629
           ID+D +K++ND+ G AVGD VL +   R   +L     LARL G+ F  +L  + +   +
Sbjct: 137 IDLDNFKQVNDLNGHAVGDAVLRTTAERFRHILPEGASLARLGGDEFVCVLRYDLDRPER 196

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT-----SSEMLKNAELAMYHA 684
           +   A  + + +A P+   +  + +T SIG AS            + +++  A++AMYHA
Sbjct: 197 VDMLATRLVEQVARPVVHNDIAVDITISIGIASSVHVGADTNQSPAQDLMHKADIAMYHA 256

Query: 685 KHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N    F   + +    R  ++  +   ++  E    Y   I L   E++G E L 
Sbjct: 257 KKKGKNRFYWFEPPMENELRFRNELEAGIRRGIQKGEFLPYYEQQIDLDTGELIGFEMLA 316

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +WD P+ G +    F+ +AEE+ +I  ++  ++E+   D   W      P + + +NI+ 
Sbjct: 317 RWDSPEMGMLGPEIFIPVAEEIGVIAELSEMLIEQAFMDAREW-----DPKLTLSVNISP 371

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +  L+ +  +  +R+++  +E+ +  N    R ++  LR  G+ ++LDD
Sbjct: 372 VQMRDPWFAQKILKLLVRQRFPANRLEIEITETCLHENIGLVRSMITSLRNQGVKISLDD 431

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS L  +PFD +K + S +   T  E+   ++ +I+ M+  ++  I A+ I  
Sbjct: 432 FGTGYSSLSQLRSLPFDRLKIDRSFIRELTNEEQSRKLVEAIVSMSDGLKLPITAEGIEN 491

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           E  +  L R G    Q  H   P     +L+ L 
Sbjct: 492 EDVLNALKRWGKMKGQGYHYGRPEPAAKVLERLA 525


>gi|320331291|gb|EFW87234.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 554

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 105/442 (23%), Positives = 208/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 110 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLTARLAEGGSLALGHLDLDNFRR 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLSEPYWVDGESLLLGCSLGIAHSQTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWRHQARGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  +Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALRDMQALHEQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 463 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 522

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 523 VQGYLISRPLPIADLVAYLRSE 544


>gi|153002425|ref|YP_001368106.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367043|gb|ABS10043.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 859

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 120/578 (20%), Positives = 230/578 (39%), Gaps = 23/578 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER  + +    + V   D+    +   P   ++L     S +   
Sbjct: 293 ASRVNSLLARIYQQKERAKITLESIAEAVILTDVDAKVIYMNPRAESLL--DVASCYALD 350

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           ++    +   D+ N + +              + ++  A      M   I  + N + +I
Sbjct: 351 QSLASLLKAGDQLN-QAVFTCIRLGESSPQVEKIKLLTA--SPRIMERSISNLRNHDKEI 407

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DIT+++     +   A  D++TG+ NRQ+F ++L      + T       V 
Sbjct: 408 VGTVVVLRDITQEELLKHQLQKRANFDSITGLLNRQAFDEQLPQFAASAKT-----IAVC 462

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +L  + + +   L   + LARL G+ FG+++ + +    
Sbjct: 463 YLDLEQFKLINDSCGHTAGDRMLAMVAKAMQACLGPQEQLARLGGDEFGLVICNRSALSV 522

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     +N       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 523 AQLLKQMIAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYIDAQELLKDADIACIAAKAKGA 582

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI  L    +   +E L++ 
Sbjct: 583 NQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGSGPQRQRMEILLRI 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +         P   I IN++   
Sbjct: 643 QEPCGRILAPAQFIAAAERFKLMPDIDKEVIRKAFLWLSLHP--VLWPDHCISINLSGNS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             I    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 701 LGAEGMVEYIAQQQHIFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 761 SGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 820

Query: 923 DIKELTRMGCDYIQDSHVASPLGF----NSILKLLKER 956
            I  L  +G +Y Q   +  P             L +R
Sbjct: 821 IIDRLLSIGINYAQGYAIGRPQPLANYREQYEMRLAQR 858


>gi|13474636|ref|NP_106205.1| hypothetical protein mll5564 [Mesorhizobium loti MAFF303099]
 gi|14025390|dbj|BAB51991.1| mll5564 [Mesorhizobium loti MAFF303099]
          Length = 514

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 195/417 (46%), Gaps = 10/417 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+  R + + ++      + +       ++ IDID++K+IND +G   GD+++ 
Sbjct: 84  HFDKLTGLLARPAMVGKIAEA-ACATSRTGEPVFLIDIDIDRFKQINDAIGYTQGDELIR 142

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + T+R+   +    ++ R+    F ++L        +      +   +  P  L   + +
Sbjct: 143 AFTKRLQTCVPARAMVGRIGAGEFAVLLPDHQIQGTMESMVERLIDEMMEPYELSTHQQS 202

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711
           V+ S+G  +     +    +L+ + LA+ +A+  G  +   F          R  ++ +L
Sbjct: 203 VSLSVGIVAMPKDGVDPVLILRRSNLALQNARAGGVGNWSVFDSEMGRVADHRQWVESEL 262

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A E  +  L Y P + L    I+G EALI+W+HP+ G I   EF+ IAEE  MI  I 
Sbjct: 263 HTAFERGDFDLHYQPQLDLPTGRIIGYEALIRWNHPERGMIPPMEFIQIAEETGMINPIG 322

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +   D     D       F+ +NI+    +  +    ++  +  T   PSR++L 
Sbjct: 323 EWVLRKACSDAHHLPD-----DCFVAVNISPVQFMTKDFVGIVRDTMRATGIKPSRLELE 377

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+ +M + +R+  +L  L ++GIS+ +DDFGT  S LSYL    F  +K + S ++  
Sbjct: 378 VTETAMMQDRDRAAAILKELAEMGISVAVDDFGTGYSNLSYLIDFSFGKLKIDRSFVSRI 437

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  A++ +I+ +++ +  +IIA+ +  E     L   GC+ +Q      P   
Sbjct: 438 GTDSSSGAVVSTIVGLSRALGVSIIAEGVETESQATLLRAAGCEVVQGYLFGRPAPL 494


>gi|56750732|ref|YP_171433.1| hypothetical protein syc0723_d [Synechococcus elongatus PCC 6301]
 gi|56685691|dbj|BAD78913.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 690

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 131/562 (23%), Positives = 256/562 (45%), Gaps = 13/562 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     +Q LA+  S D++   +           +      +  S+ G     L      
Sbjct: 132 LRHRLRQQELALEHSSDLMIRCNNRGFITWANQALLERQNKSLDSIVGIDFTQL-RTQPT 190

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R     +L +        L      +  + +F+ +  ++ P+ + +G++   + +  D+
Sbjct: 191 ERHTLLQMLRT-----GQALNAMVEYQTEEKEFYLVQEKLLPILSDDGELETIVIVQQDL 245

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q  +          D LTG+PNR+     +   L    T       ++ I++D+++++
Sbjct: 246 TFQAAAEIRTQQQLQTDALTGLPNRKGMYQSIRHNLGRVETHKQ-PFALLRINLDRFQRV 304

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +L SL   +  +L +   LA L G+ F  ++       +    A  +R 
Sbjct: 305 NDAAGYHFGDYLLRSLALNLRRVLGYGTELACLGGDEFAAVIAPCYQEEEAIAIADEVRS 364

Query: 640 SIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +IA+  +L     I++TASIG      + +T   +L  A  AM+ AK RGG+    +R+ 
Sbjct: 365 AIAISGSLAAAAGISLTASIGIVLV-DTNLTEEMVLDRANQAMFAAKRRGGDCTVIYRLP 423

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              S R    ++  L  A+   EL L Y PII L   +I+ LEAL++W+HP +G IS + 
Sbjct: 424 LHDSIRQEAALQFALRQAIAEQELKLAYQPIISLRTGQIISLEALLRWNHPHFGYISPAL 483

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+   I+++  + +      +  W  Q ++  + + +N +  DL        ++ 
Sbjct: 484 FIPLAEDSGQIESLGEWAVHEACHQLAEWAKQPDLAHLRVAVNCSFVDLKTERWAATVKT 543

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  +   PS++ + ++ES +  +P  +  L   L+ +G+ + LDDFG+  S ++YL   
Sbjct: 544 ALQSSQLPPSQLIVEYTESAIAKDPAAAIALSSYLQDLGVDVALDDFGSGYSSMAYLIQF 603

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K + SL+T     E+  A++R+II +AK +     A+ +     ++ L   GCD+
Sbjct: 604 QAQGLKIDRSLITPIVEDERSQAVVRTIIDLAKRLGLRTTAEGVEEREQLELLHSWGCDF 663

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q  + + PL  + +   ++  
Sbjct: 664 AQGFYFSRPLLADDLPDFIRNY 685


>gi|87118189|ref|ZP_01074088.1| hypothetical protein MED121_14219 [Marinomonas sp. MED121]
 gi|86165823|gb|EAQ67089.1| hypothetical protein MED121_14219 [Marinomonas sp. MED121]
          Length = 776

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 209/432 (48%), Gaps = 8/432 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +  +      D+LT + +R    ++L   +            V+ +D+D +K +N+  G
Sbjct: 333 MMRRVNRQLEIDDLTNLYSRYFIHEKLDKAIIRCKEKQ-TNLAVVFMDLDHFKTVNEAFG 391

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFAIAMRKSIA 642
             VGD +L  + +R+  +     +L RL G+ F   +    + N   +      +   ++
Sbjct: 392 HEVGDKLLNKVAQRLTSVWPADAVLGRLGGDEFLAFIELNEQMNHQDLKLLCREVITQVS 451

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
               +  R +T+  SIG A + +    +  ++KNA++AMY AK  G +    +       
Sbjct: 452 HSYLIDSRTLTIGCSIGVALFPNFGSDAMTLVKNADMAMYKAKALGRSIYHFYDGDIGDR 511

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  V I+  L  A++N  L L + P + L   E +GLEAL++W   + G +S +EF+ I
Sbjct: 512 LARNVKIETRLRHAMQNDGLKLYFQPKVNLESLECIGLEALLRWRDEELGVVSPAEFIPI 571

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +  +++++  R I +W+ Q    P  I IN ++  L  ++    +   +++
Sbjct: 572 AEQSGIILPLGEWVIDQTCRQIFNWQAQGLSVP-PIAINCSAAQLKRDDFFSVLLQSLNR 630

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SPS+++L  +ES+++ + ER   LL ++ ++G+ +T+DDFGT  S LSYL  +PF+ 
Sbjct: 631 YDISPSQVELEVTESMLIEDAERCSKLLQQVSRLGVKITIDDFGTGYSSLSYLKDLPFNC 690

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AI  +II M++ +   ++A+ I     ++ L  +GC+  Q  
Sbjct: 691 IKIDQVFIRDMIEDVNHAAITAAIIKMSQTLNLQVVAEGITNHKQLEVLRELGCNIGQGF 750

Query: 939 HVASPLGFNSIL 950
                   + + 
Sbjct: 751 LFGEAFHADHLA 762


>gi|332529867|ref|ZP_08405819.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332040661|gb|EGI77035.1| diguanylate cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 1018

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 109/564 (19%), Positives = 229/564 (40%), Gaps = 28/564 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPI- 449
           A   +  G+  +  R    +      +      R           I  +     + G   
Sbjct: 445 ARRRYLTGLEEEHARLLALLGAMDLGILFVTADRQVQYCNRTFLRIWRMDEHVNLVGRAV 504

Query: 450 -----RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                 + +  +      +F + L   +G       +E  +  AD +   ++    P+ +
Sbjct: 505 GEVLADSGVEIVQPE---HFASHLREVLGTHETTTTHE--IATADGRV--IVQTAYPVRD 557

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G  +  + I  D+T ++++ E ++  A +D LTG+ NR+ F D L   +  S      
Sbjct: 558 AEGRFIGQLWIHEDVTRERQTAEQLVYLAERDALTGLFNRRRFEDELARFIQESQRRHR- 616

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++  D+D++K IND  G   GD VL+ +   +G L +  ++L RL G+ F +++   
Sbjct: 617 HGALLFFDLDEFKHINDTFGHRAGDAVLIRVASEVGALTRRNELLCRLGGDEFAVLMPDA 676

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                       +R    +P  L  + + +T+S+G A +    +++ E++ +A+ AMY A
Sbjct: 677 RQEEAEQLAERIVRAIALIPFRLDGQNLRLTSSLGIALYPHGSVSAEELVAHADTAMYQA 736

Query: 685 KHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           K  G N    +      S     R+   + +  A+E     L Y  +    D  +  LE 
Sbjct: 737 KESGKNAWRLYEPGRDSSRKMITRLGWNDRIARALEQGLFRLHYQGVYHAGDGTVSHLEV 796

Query: 741 LIQWDHPK--WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           LI+          I   +F+  AE+   I  I+ +++      + +  D        + +
Sbjct: 797 LIRMVDVDDPLQLIMPGQFIPHAEKSGKILDIDRWVVRASIEQLAANPDMPP-----LAV 851

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI+ +    N     +  ++      PSR+ +  +E+  + + + +   +  LR+ G   
Sbjct: 852 NISGRSFDQNSFPNYIAEMLRIHGVQPSRLLVELTETSAVSDLQDAECFIEALRQTGCQT 911

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFG   +  +YL ++  D +K +G  +            +R+I+ +A+ +    +A+
Sbjct: 912 CLDDFGAGFASFAYLKHLKVDLLKIDGLFIRDLPKDGDNQIFVRAIVDVARALGKRTVAE 971

Query: 917 DIYGEIDIKELTRMGCDYIQDSHV 940
            +  +  +  +  +G D +Q  H+
Sbjct: 972 FVEDQQTLDMVRALGVDLVQGYHL 995


>gi|71736508|ref|YP_272391.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71557061|gb|AAZ36272.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 554

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 209/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 110 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLTARLAEGGSLALGHLDLDNFRR 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLSEPYWVDGESLLLGCSLGIAHSQTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWRHQARGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 463 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 522

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 523 VQGYLISRPLPIADLVAYLRSE 544


>gi|306820779|ref|ZP_07454404.1| sensory box/ggdef family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551169|gb|EFM39135.1| sensory box/ggdef family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 822

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 144/810 (17%), Positives = 318/810 (39%), Gaps = 61/810 (7%)

Query: 190 LYRGIIIGVASLLAIFLTI----FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           +Y   +I +  +   F        Y + +++++   + +  ++   IS+  G +    + 
Sbjct: 1   MYLFFLISILFICGSFALYHGQKLYNLIKNNLISRLYFLLCILFAVISLLSGAVYISGDN 60

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF---- 301
                L +       +   ++  +  ++        +  +    +  I  +    F    
Sbjct: 61  NLINELFYFEYYFYIIIFYILYAVVFFVEQKNDKKNIRNLQLILLIPIFYIVFFYFNKEA 120

Query: 302 -----YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
                +   + + +   +   I+L  T   I+   +            I + I  I   +
Sbjct: 121 LLNEKFKNNILSYVILSSYFFIILLLTVKKIFVEHRVLLSVEDFPNRPIYLVISLILFVV 180

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                +        +   L+ + +     ++  +L+          D      ++     
Sbjct: 181 GYILHIIFSGNINYVNKLLITLPLFSCIILLGEILSKIIKYDAYCKDV--LETSIYNMNQ 238

Query: 417 IVWDWDIVRDRVTTTPDIATILG--LASGSMHG--PIRNWLPYIHINDRDNFRTILDSFV 472
            +   D     + ++   + + G      +M+     RN+      ++ + +R  L+  +
Sbjct: 239 ALVITDFNGKIIFSSKKFSDLFGKNYIGSNMNEFIVSRNFFEN-KPSEEEYYRAFLN--I 295

Query: 473 GYRRGRLQYEFR-VRAADNQF---HWMIIRIRPMSNSNGDILRYIG----IANDITEQKK 524
             +   +  ++  +    +      +++  I+P+   N  + +         ND  E+K+
Sbjct: 296 NDKTVEVMIKYIDILNKFHTLTNRVFIVQSIKPIIEINERLRKLKRKLDKTFND--ERKR 353

Query: 525 SLEGILCNAF-----------------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +                         D L+G+ NR  F+  L  +++    + +    
Sbjct: 354 LEKRNRELNENLINKESIEYQIRDIFCYDTLSGLYNRGYFMQNLEQVIN---EEPSKIHA 410

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDILARLSGNRFGIILISENN 626
           +M +D+D +K IND LG + GD+V++ + +R+         I +R  G+ F ++     N
Sbjct: 411 LMYLDLDGFKSINDSLGHSYGDEVIIEIGKRLRNKYKYKNVIASRFGGDEFVLLFRDVPN 470

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              ++  A  +   +  PI     ++ ++ SIG + +     +  ++ KNA+ AMY +K 
Sbjct: 471 DSFVSGNAQEIIDMVKEPIYFDNSKVHLSVSIGISMYPKDGESIEDLTKNADTAMYESKE 530

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALI 742
           +G      F         D   + + L  AV N EL L Y P I + D+   ++G E+L+
Sbjct: 531 KGKGQYNFFDEKFKWRIQDEFNLTKKLVSAVPNKELILFYQPQILIKDDIANVIGFESLM 590

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W            F+ +AE+  +I  +  + +        SW +      I I IN+++
Sbjct: 591 RWK-KDGEIRLPGTFIPVAEKTNIISDMGKWAISEACSQWKSWYETYGK-KIKISINLSA 648

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L++  L + +   +  +   PS I+L  +ES ++ N ++S   L  L+  G+ +++DD
Sbjct: 649 NQLMNPMLEDEVATALLNSQADPSCIELEITESAIVKNMKQSIAKLNSLKSYGVKISIDD 708

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FGTK S  SYL  +P D +K + + + G  +     AI+ S+I ++K +   IIA+ +  
Sbjct: 709 FGTKYSTFSYLKELPVDKIKIDMNFIHGIGKNRIDEAIILSLISLSKELNIEIIAEGVET 768

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           E  +  LT  GC+ IQ  +  S L   ++ 
Sbjct: 769 EEQLNFLTANGCNMIQGFYFFSALPVETVE 798


>gi|187935185|ref|YP_001885685.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum B str. Eklund 17B]
 gi|187723338|gb|ACD24559.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum B str. Eklund 17B]
          Length = 784

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/561 (21%), Positives = 249/561 (44%), Gaps = 27/561 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   +  + +      VW  DI    V      +    ++   + G I +        
Sbjct: 244 LKNKDAKLQMLMDNLPFPVWLTDINAKYVNGNKKFSDYFNVSMNELIGRIPHEFFG---E 300

Query: 460 D--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           D  +D +    +        + + + +V   +N+   + I   P+ +   +++       
Sbjct: 301 DIVKDIYSQNKEVMGAKETRKFESDIKV---NNEIRSVEIYKTPVLDIGNEVIGIASALI 357

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT+ K++   I   AF D LT I NR +  D +          D     +M++DID +K
Sbjct: 358 DITDIKEAQRKIKKQAFTDALTQISNRTALYDYMKN------ESDYSNIGMMLVDIDNFK 411

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND  G   GD V+V +   + ++      + R  G+ F ++     +   I D A  +
Sbjct: 412 DINDYYGHNFGDKVIVHVANELKKICNDT-FICRFGGDEFLVVFKDVESENIICDKAEKI 470

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + I M       + +V+  I      ++    + +L N +LAMY +K  G N    +  
Sbjct: 471 LEKIHM---YKGHDFSVSIGIAIG---NNISDINRLLVNVDLAMYKSKELGKNRYMKYTK 524

Query: 698 SSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  + +  ++DL  A+  +E+ + Y P   + D ++ G EAL +W   K+ N+   
Sbjct: 525 ELEAEKNLTLNIEKDLKYAIGKNEVKVFYQPQYTI-DRKLKGFEALFRWQSKKYANVPVI 583

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + + E   +I  +  ++++   +      +      I + INI++  +++ +  + ++
Sbjct: 584 NIIEVMESSNLIIDMGYYIMQEACKFAKKINENRKD-KIVVSINISAIQIMEKDFIKKVK 642

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           ++I+KT      I +  +E+V++ N E + + +  L+ +G++++LDDFGT  S L+Y+  
Sbjct: 643 SIINKTSVFIDCIGIEITETVLVKNIEENIMKIKELKDMGVTISLDDFGTGYSSLNYIVN 702

Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S ++G   K+    +LR II  A ++   I+A+ +  E  + +L +M  D
Sbjct: 703 MPLSLIKIDKSFISGMNVKKEYTKLLRLIIASAHSLNLPIVAEGVETEEQLAKLNKMNVD 762

Query: 934 YIQDSHVASPLGFNSILKLLK 954
           Y+Q    + P+      KLL+
Sbjct: 763 YVQGFLFSKPVEEEKAFKLLE 783


>gi|170748846|ref|YP_001755106.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655368|gb|ACB24423.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 535

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 223/439 (50%), Gaps = 13/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +       A  D LTG+ NR+ F+D     ++ +         V++ID+D++K +N
Sbjct: 92  ERAAAAAQAEAIARHDGLTGLANRRRFID----AVERAHASGAGDAAVLLIDLDRFKPVN 147

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G A G+ VL ++  R+ +L+    + ARL G+ F +++     S  +   A A+   
Sbjct: 148 DLYGHAAGNAVLCAVAERLQQLVPSGGLAARLGGDEFAMLVPLRYESEALRRLAQAVIGR 207

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+   + ++ V A++G A+ ++    +  +L  A+LAMY  K  G  +   FR +  
Sbjct: 208 IAEPVTWSQNDLKVGATVGVAAVSAEHGDADAILHAADLAMYQGKKDGRGNFRFFRSAMD 267

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  ++ +L  A+E   +   Y P++ L + EIVG+E L +W HP  G +  SEF+
Sbjct: 268 AELRARARMETELRGAIETGAIEPFYQPVVSLPEREIVGVEVLARWRHPSRGLVGPSEFI 327

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  MI  ++  ++ R   D  +W      P + + +NIA +   D  L + +  ++
Sbjct: 328 PVAEETGMIADLSYTLIRRACLDARAWP-----PHLILAVNIAPQQFQDAWLAQRILGIL 382

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T + P R+++  +ES ++ + E +R  L  LR++G+ + LDDFGT  S L +L  + F
Sbjct: 383 TETGFPPQRLEVEITESALIQDLEATRTTLLSLRELGVRIALDDFGTGYSSLYHLRELKF 442

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +     +++R  ++ +II +  ++  +  A+ I  +  +  L+  GC + Q
Sbjct: 443 DKLKIDRSYVDAITMSDERAKLVDAIIKLGASLGLSTTAEGIETDASLDWLSDQGCHFGQ 502

Query: 937 DSHVASPLGFNSILKLLKE 955
                  +    +  +L  
Sbjct: 503 GYLFGHAMPKAEMDDVLAA 521


>gi|295700394|ref|YP_003608287.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295439607|gb|ADG18776.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 649

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 215/452 (47%), Gaps = 10/452 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G     +    D      + E     A QD+LTG+PNR    + L      S+T    
Sbjct: 185 AAGFFTVALRSNRDTVALLLARENSHRLARQDSLTGLPNRARISELLLERTGESSTGQGG 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ +LL   D + RL+G+ F  I    
Sbjct: 245 AFAVLLIDLDGFKAINDSLGHAAGDQILQEAATRLRDLLPSGDQVGRLAGDEFVAISDDT 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                +   A  + +++A P  L E  + + AS+G A +     T  ++L  A+ A+Y  
Sbjct: 305 GQLRDVRVLADRIVRTLARPFVLSEALVHIGASVGIALYPEHAKTGPQLLICADRALYGV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F      SD    +++ DL  A+++   L + Y PII L    + G EAL
Sbjct: 365 KRSGKSAFAIFDAEKHVSDESLSLLRSDLEGALKSFDGLRMEYQPIIDLHTGAVAGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S S F+  AE   +I  +  ++L +      +WRD      + + +N++
Sbjct: 425 LRWAHPTRGELSPSAFIPTAERTGLILLLGEWVLLQSCMAASTWRD-----KVIVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      + A++ KT   P+R+ L  +E+ ++ + E +R  + RLR +GI+L LD
Sbjct: 480 PVQLREESFASTVTAILRKTRLPPTRLNLEVTETALLNDDEVTRRNITRLRALGIALALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  +    +  A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFSFDKLKIDSSFVREAVHGRESAAVVRGIVALAREIGMPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +   GC + Q   +  P+  + I +
Sbjct: 600 TQEQLNFVRVCGCTHAQGYLLGKPMSNDEIEQ 631


>gi|238927106|ref|ZP_04658866.1| EAL/GGDEF/PAS/PAC-domain signalling protein [Selenomonas flueggei
           ATCC 43531]
 gi|238885086|gb|EEQ48724.1| EAL/GGDEF/PAS/PAC-domain signalling protein [Selenomonas flueggei
           ATCC 43531]
          Length = 563

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 117/561 (20%), Positives = 229/561 (40%), Gaps = 24/561 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  +     L    S D ++  D + D    +P    I  L + ++        P +   
Sbjct: 13  LKQNKLLFDLMKNTSPDYLFMMDPIADVFLASPAFVRIYDLPAETLMHISDLLSPLVEAQ 72

Query: 460 DRDNFRTILDSFVGYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           DR  F  I  S  G    R +   FR+R A  ++ W+ ++ +   +++G    ++G  + 
Sbjct: 73  DRQAFTAIFSSLAGSTEERERSLNFRMRDAKGEYAWLRLKGKIGVSADGQPNLFVGTISQ 132

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +  +  +          D +TG+ NR  F++ L   L  +         ++V+ ID ++ 
Sbjct: 133 LARRNPA----------DVVTGLLNRYQFIEDLGNALREARETGRG-GGLLVMGIDNFRT 181

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +N+     VGD +L  ++ RI + +     L RL G+ FG+I     +   + +F I ++
Sbjct: 182 VNEAFNHEVGDIILRQISERILQNVPRRLALYRLDGDEFGLIYPG-ADEEMLQEFFIRVQ 240

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +  A P     R+  VT S G   +  S      + K A+ A+  AK  G N +  F  +
Sbjct: 241 REFAHPQVYDGRQYLVTVSAGMVFYPQSARDPLVLHKYAQAALDAAKSGGKNRLSEFSKA 300

Query: 699 SFRSDRVMI---KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +      +   ++ L           L + P I   D+ +VG E L++W + K   ++ 
Sbjct: 301 VYNRWLRSLTIQEQILEDVKAGCRNFELYFQPQIAGDDQHLVGAETLLRWKNEKGNMVAP 360

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ I EE   I  +  ++ E+  R    WR +       + +N++ + + D    E +
Sbjct: 361 MEFIRILEETKTIVPVGRWIFEQALRVCKEWRKKIPE--FRMSVNMSYEQIKDLSFLEFV 418

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  + +       + L  +ES ++ + +         R  GI + +DDFGT  S LS L 
Sbjct: 419 KDCLRRHDMPADAVVLELTESKIISDLKFVNAQFDSFRMHGIKIAMDDFGTGYSSLSSLK 478

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + + +    +      ++   + +  +I  T   + +  + +   L R+ C
Sbjct: 479 NLNCDIIKIDRAFVMRILDNNFDQKLVEYTVDLCHSIGKTTCIEGVEHQDEYDCLVRI-C 537

Query: 933 --DYIQDSHVASPLGFNSILK 951
             D IQ      P    +  K
Sbjct: 538 KTDTIQGYLFGRPEPQEAFEK 558


>gi|296161722|ref|ZP_06844525.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295888036|gb|EFG67851.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 643

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 217/452 (48%), Gaps = 10/452 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G     +    D      + E     A  D+LTG+PNR    + L    ++ A   + 
Sbjct: 185 AAGFFTVALRSNRDTVALLLARESSHRLAHHDSLTGLPNRARLSELLLERTEMGAVSKDQ 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ E+L   D++ RL+G+ F  +    
Sbjct: 245 SFAVLLIDLDGFKAINDSLGHAAGDQILQEAAIRLREVLPSGDLVGRLAGDEFVALCDGA 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +  +   A  + K++A P  L E  + + AS+G + +     T  ++L  A+ A+Y  
Sbjct: 305 GQARDVRILADRIVKTLARPFALREALVHIGASVGVSLYPDHARTGPQLLICADRALYAV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F  +   SD    +++ DL  A+ +   L + Y PI+ L    + G EAL
Sbjct: 365 KRSGKSAFTIFDAAKHASDESLSLLRSDLEGALHSFSGLRMEYQPIVDLSSGAVCGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +  S F+  AE   +I A+  + L +  ++ ++WRD      + + +N++
Sbjct: 425 IRWTHPTRGELPPSSFIPTAERTGLILALGQWALLQSCKEAVTWRD-----KVTVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      +  ++ KT   P R+ +  +E+V++ +   +R  + RLR +GI L LD
Sbjct: 480 PVQLREESFASAVAGILRKTRLPPQRLNIEVTETVLLNDDVVTRRNVARLRALGIGLALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  S  +R   A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFSFDQLKIDSSFVKESVHRRESAAVVRGIVALAREIGMPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +   GC + Q   +  P+  + I +
Sbjct: 600 TQEQLDFVRVCGCTHAQGFLLGRPVQGHEIAQ 631


>gi|116253904|ref|YP_769742.1| transmembrane sensory box GGDEF/EAL family protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258552|emb|CAK09656.1| putative transmembrane sensory box GGDEF/EAL family protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 737

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 213/436 (48%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K         A +D L+G+ NR      +   +  +         ++ +D+D +K++ND
Sbjct: 292 LKAEENSAREEALRDRLSGLSNRDGLGLAVDRFVVEARQTKR-NVLLLYLDLDGFKEVND 350

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD ++ ++   +  L+    +LAR+ G+ F I  +S++ +      A  +   +
Sbjct: 351 SYGHGTGDQLIRAVAAGLDVLIPQGAVLARIGGDEFAIAFLSDSENAAALQLAEQILDFL 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+ +  R + V ASIG A   S  I   E+++ ++LAMY AK  G   +  +  S   
Sbjct: 411 VEPLEIGRRVVVVGASIGIAMSPSGTIGREELVRRSDLAMYKAKEAGRARMTLYDASMDA 470

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ DL +A+E+ +L L Y P+I      + G+EAL++W+ P  G +S   F+ 
Sbjct: 471 DREQRNALELDLRIAIESGDLTLAYQPLIDAATHAMTGVEALVRWNRPGHGPVSPELFIP 530

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE   +I+++ LF+L +       W      P + + +N++     +    + ++ ++ 
Sbjct: 531 IAETSGLIESLGLFVLRKACETAKQW------PNLNVSVNVSPGQFRNPAFTDYVRYVLK 584

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T     RI L  +E  ++ NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD
Sbjct: 585 QTEIEAGRITLEITEGYMIQNPQRTRQSIERLKGLGVKVALDDFGSGFSSIGYLRQFGFD 644

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G  E +    +L++ + +A++++  + A+ I  E     +   GCD +Q 
Sbjct: 645 RIKIDRSLVMGVNEDKRQREMLQATVALARSLDIPVTAEGIETEEQAIAMRLFGCDCLQG 704

Query: 938 SHVASPLGFNSILKLL 953
                P+  + I ++L
Sbjct: 705 YLFGKPVTSDLISEML 720


>gi|117928869|ref|YP_873420.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117649332|gb|ABK53434.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 450

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 204/441 (46%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-----NLRPTVMVIDIDKY 576
            +  +      A  D LTG+PNR +F       +  + +            V VID+D++
Sbjct: 5   LRTEVARNAYQARHDALTGLPNRAAFQRSGEAAVARAVSRRLGVRREGTTAVAVIDLDRF 64

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L  +  R+    +  D +ARL G+ FG+IL    +          
Sbjct: 65  KAINDTLGPRNGDVLLRRIAERLASHTRKGDTVARLGGDEFGLILRDTADPHDAL---CR 121

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           +R  I   +++    + V ASIG+A       T  E+L+ A++A++HAK R  G      
Sbjct: 122 IRGLIESELDVAGIPLAVEASIGYAVTPDDAATIEELLQYADVAVHHAKARHLGVVRYHP 181

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             + + +  + +  +   AV +++L L Y P  +L D  +  +EAL++W HP  G +   
Sbjct: 182 SQNHYDAASLSLISEFRRAVTDNQLVLHYQPKAKLSDGAVEAIEALVRWHHPARGLLYPD 241

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E+  +I  +  ++L     D+ +       P + + +NI++++L  +     ++
Sbjct: 242 VFVPLVEQTDLIDDLTRWVLRHALEDLATI----GDPHLAVAVNISARNLSRHTFAADVK 297

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A + +    P R+ L  +E+ ++ +P R+  +   L   GI +++DDFG   + L YL  
Sbjct: 298 AAVRRAGIEPHRLVLELTETALLFDPTRAHDVFTDLTSYGIRVSIDDFGRGQTSLGYLSA 357

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + + +          AI+RS++ +  N+   ++A+ +       EL   GCD
Sbjct: 358 LPLSEIKIDRTFVRDMVTNAAHAAIVRSVVELGHNLGLIVVAEGVETAEVGDELRECGCD 417

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q    A P+    + + L 
Sbjct: 418 VAQGYWFARPMPLVDLRRWLA 438


>gi|293609229|ref|ZP_06691531.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827681|gb|EFF86044.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 696

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 247/572 (43%), Gaps = 11/572 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +  + E Q+  +  S D +   ++              LG+        ++ WL  +
Sbjct: 126 QQNLQKNIEIQNQMLDISVDCIKVLNVDGTLSHMNKSGCLALGVPVDETEFGMK-WLELL 184

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             + R   R  L   +  +  R      +   D ++      + P+   NG+I + + ++
Sbjct: 185 PPHIRKRGRVALKKALQGKVARFAGMSCLPDQDPEY--WDNMLTPIHRENGEIGQILCVS 242

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  D      +++ID+D +
Sbjct: 243 RNVTQQHLAENQLRNMSERDELTGLYNRRSFKFQLKRTLSYSK-DTQTSVGLLLIDLDHF 301

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAI 635
           K IND LG + GD +L  L++R    +     ++ARL G+ F +I+ + N+   + + A 
Sbjct: 302 KHINDTLGHSAGDHLLKVLSKRFSHCVDDEKCVVARLGGDEFAVIINNLNSENDVRELAA 361

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  PI  L   +    SIG A +    +  S +L  A++A++  K RG   +  +
Sbjct: 362 ILLQQLNQPITYLGNVLNGGMSIGCAIYPQDAVDQSGLLSCADMALHDLKARGRGGIRMY 421

Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +               + +  +   Y P + L    +VG EAL++W         
Sbjct: 422 DPCMMQMTETVASQLNLARQLIRHHTIQPYYQPKVDLNTHRVVGFEALLRWHTTSAQRGY 481

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++     ++  +   I   M  ++ RDI  W +   + P+ + +N A  + L +   E 
Sbjct: 482 PAQIAEAFKDYNLASKIGETMQHQVLRDIAKWIN-LGITPLPVSLNAAPVEFLRDNYAER 540

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +   +++       I++  +E ++     E     L +L++ G+ + LDDFGT  S L++
Sbjct: 541 LLKKVNQFQIPTHYIEVEVTEHMLGDRGSEYVIRALNKLKQHGVRIALDDFGTGFSSLTH 600

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +   P D++K + S +          AI+++I  +A N+   +IA+ I      + L + 
Sbjct: 601 IRDYPIDSLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAEGIETPEQEELLRQF 660

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           G    Q     S +    ++ +LK+  P +++
Sbjct: 661 GYSIGQGFLFESAIDATQVISILKQNQPYLES 692



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +       WL +I+  D D  +
Sbjct: 9   QKHFIVEQIPLPTWVSDENGLILYCNIECTE---YWLDTFSPLPAQWLDFIYPTDLDEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR--IRPMSNSNGDILRYIGIA---NDIT 520
                 +  ++ R++ + R+  A NQ+ W  +        +S+     Y+      +DI 
Sbjct: 66  NRWLEAIRLQK-RIELKCRLLRAGNQYRWCKLSIQASKYRSSSQTSEWYVSFLDIDHDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQNLQKNIEIQ 136


>gi|167840964|ref|ZP_02467648.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis MSMB43]
          Length = 872

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG ++ +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYSAAACVGAPVSSVLMLLDKETGQAVDIVDEFWARDERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRMHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDLSATD-DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L  + +  D     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTTSGKDRADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPRGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCRAPC 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
           +    +K A++A Y AK RG N ++    S    +     V     +  A+E     L  
Sbjct: 585 SLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALEADGFRLYL 644

Query: 725 HPI--IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI       +     E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTCPDSQTPGRAEVLLRMTDNAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELVSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRAIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E ++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEAELGMLRELGIDFCQGYFFAQPSP 866


>gi|294650001|ref|ZP_06727389.1| diguanylate cyclase/phosphodiesterase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824094|gb|EFF82909.1| diguanylate cyclase/phosphodiesterase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 683

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/552 (20%), Positives = 228/552 (41%), Gaps = 13/552 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S D +   D+    +         L +   + H     W   +    R      L 
Sbjct: 134 MLDNSVDCIKLLDLDGYLLHVNRTGCIALNI-PENNHRFGMKWTELLAPEIRSKANYALK 192

Query: 470 SFVGYRRGRLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             +  +  R    FR  + + +   +    + P+ N  G I++ + ++ D+T Q+++   
Sbjct: 193 MVLKGKTAR----FRGMSGEGENKQYWDNLLTPILNDKGQIVQILCMSRDVTAQRQTEIQ 248

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +  ++  D LTG+ NR+ F  +L   L     ++     ++++D+D +K +ND LG A G
Sbjct: 249 LRISSELDELTGLYNRRFFKLQLKRALQRHKKNEKF-LGLILLDLDYFKHVNDTLGHAAG 307

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  L++RI   L     +ARL G+ F I++    +  ++   AI + + +  PI   
Sbjct: 308 DHLLRILSKRIENTLPENTFVARLGGDEFAILVNGIEHEQELEKIAIDVSRQLDAPITYA 367

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVM 706
              I  + SIG A +      SS ++K A+ A+   K  G      F         +  +
Sbjct: 368 GNLINGSMSIGCAIYPRDVKDSSNLMKCADTALNDLKATGRGGFRMFNQQMEIAAQNIAV 427

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
                   + +  +   Y P +RL D ++VG EAL++W        S        ++  +
Sbjct: 428 QLNQARHIIRDDLMVPFYQPKVRLSDGKVVGFEALLRWQTDDKHIHSPCHIEQAFQDYVL 487

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              I+  +  ++ ++I  W +Q     + I IN A  + L +   E +   ++       
Sbjct: 488 ATRISDAIQNKVFKNIAMWLEQGLAV-VPISINAAPVEFLKDNYAERLLQRLNLYKIPHH 546

Query: 827 RIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +++  +E ++     +     L  L++ G+ + LDDFGT  S L+ L   P D +K + 
Sbjct: 547 LVEIEITEHILDDRGSDYVIRALNLLKQQGVKIALDDFGTGHSSLTRLRDYPVDCLKIDC 606

Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +          AI+++II +   +   I+A+ I     ++ L + GC   Q    +  
Sbjct: 607 EFIRQMNGDEAILAIVQAIIALGPKLALDIVAEGIENSEQLELLKQFGCSIGQGYLFSRA 666

Query: 944 LGFNSILKLLKE 955
           +       ++K 
Sbjct: 667 VNAQQATHMMKR 678



 Score = 61.1 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
                  +VW      D           +G+          NW+  +H+ D   F+    
Sbjct: 8   VFNHIPSLVWLLSDQGDAYFFNKVSQEYIGI--NEFQKFQNNWMDLLHLEDIAVFQKEWR 65

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                +    Q E R+R     + W ++  + +    G    +   + DI E K+   
Sbjct: 66  QAFATK-APFQVECRLRHQSGAYRWFLLSAKFVEADQGGQAHWFINSVDIHETKQYQH 122


>gi|91779680|ref|YP_554888.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91692340|gb|ABE35538.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 643

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/452 (27%), Positives = 217/452 (48%), Gaps = 10/452 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G     +    D      + E     A  D+LTG+PNR    + L    ++ A   + 
Sbjct: 185 AAGFFTVALRSNRDTVALLLARESSHRLAHHDSLTGLPNRARLSELLLERTEMGAVSRDQ 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ E+L   D++ RL+G+ F  +    
Sbjct: 245 SFAVLLIDLDGFKAINDSLGHAAGDQILQEAAIRLREVLPSGDLVGRLAGDEFVALCDGA 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +  +   A  + K++A P  L E  + + AS+G + +     T  ++L  A+ A+Y  
Sbjct: 305 GQARDVRILADRIVKTLARPFALREALVHIGASVGVSLYPDHARTGPQLLICADRALYAV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F  +   SD    +++ DL  A+ +   L + Y PI+ L    + G EAL
Sbjct: 365 KRSGKSAFAIFDGTRHASDESLSLLRSDLEGALHSFSGLRMEYQPIVDLSSGAVCGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +  S F+  AE   +I A+  + L +  ++ ++WRD      + + +N++
Sbjct: 425 IRWTHPTRGELPPSSFIPTAERTGLILALGQWALLQSCKEAVTWRD-----KVTVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      +  ++ KT   P R+ +  +E+V++ +   +R  + RLR +GI L LD
Sbjct: 480 PVQLREESFASTVAGILRKTRLPPQRLNIEVTETVLLNDDVVTRRNVARLRALGIGLALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  S  +R   A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFSFDELKIDSSFVKESVHRRESAAVVRGIVALAREIGLPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +   GC + Q   +  P+  + I +
Sbjct: 600 TQEQLDFVRVCGCTHAQGFLLGRPVQGHEIAQ 631


>gi|299769847|ref|YP_003731873.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
 gi|298699935|gb|ADI90500.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter sp. DR1]
          Length = 698

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 247/572 (43%), Gaps = 11/572 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +  + E Q+  +  S D +   ++              LG+        ++ WL  +
Sbjct: 126 QQNLQKNIEIQNQMLDISVDCIKVLNVDGTVSHMNKSGCLALGVPVDETKFGMK-WLELL 184

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             + R   R  L   +  +  R      +   D ++      + P+   NG+I++ + ++
Sbjct: 185 PPHIRKRGRVALKKALQGKVARFAGMSCLPDQDPEY--WDNMLTPIHRENGEIIQILCVS 242

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  D      +++ID+D +
Sbjct: 243 RNVTQQHLTENQLRNMSERDELTGLCNRRSFKFQLKRTLAYSK-DSQTSVGLLLIDLDHF 301

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAI 635
           K IND LG + GD +L  L++R    +      +ARL G+ F +I+ +  +   + D A 
Sbjct: 302 KHINDTLGHSAGDHLLKVLSKRFSHCVDDERCFVARLGGDEFAVIINNLKSESDVRDLAA 361

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  PI  L   +    SIG A +    +  S +L  A++A++  K RG   +  +
Sbjct: 362 ILLQQLNQPITYLGNVLNGGMSIGCAIYPQDAVDQSGLLSCADMALHDLKARGRGGIRMY 421

Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +               + +  +   Y P + L    +VG EAL++W         
Sbjct: 422 DPCMMQMTETVASQLNLARQLIRHHTIQPYYQPKVDLKTHRVVGFEALLRWHTTSAQRGY 481

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            S+     ++  +   I   M  ++ RDI  W D   + P+ + +N A  + L +   E 
Sbjct: 482 PSQIAEAFKDYNLASKIGETMQHQVLRDIAKWID-LGIKPLPVSLNAAPVEFLRDNYAER 540

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +   I++       I++  +E ++     E     L +L++ G+ + LDDFGT  S L++
Sbjct: 541 LLKKINQFQIPTHYIEVEVTEHMLGDRGSEYVIRALNKLKQHGVHIALDDFGTGFSSLTH 600

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +   P D++K + S +          AI+++I  +A N+   +IA+ I      + L + 
Sbjct: 601 IRDYPIDSLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAEGIETPEQEELLRQF 660

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           G    Q     S +  N ++ +LK+  P +++
Sbjct: 661 GYSIGQGFLFESAIDANQVISILKQNQPYLES 692



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +I   D D  +
Sbjct: 9   QKHFIVEQIPLPTWVSDENGLILYCNVECTE---YWQDTFSPLPQQWLDFISPVDLDEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR--IRPMSNSNGDILRYIGIA---NDIT 520
                 +  ++ R++ + R+  + NQ+ W  +         S+     Y+      +DI 
Sbjct: 66  NRWLEAIRLQK-RIELKCRLLQSGNQYRWCKLSIQASKYRGSSLASEWYVSFLDIDHDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQNLQKNIEIQ 136


>gi|116253512|ref|YP_769350.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258160|emb|CAK09261.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 605

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 135/585 (23%), Positives = 249/585 (42%), Gaps = 38/585 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
                    R  LA+  S   VW+  I +D +     +  +              W   I
Sbjct: 19  EHEFQDLLRRLELALDASRIGVWEHSIEQDGILWDAQMHRLYETGETCRLVTASLWSNAI 78

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +DR+      +  +  R G    +FR+     +   +  R     ++ G    +IG  
Sbjct: 79  HPDDRERAERDFEQAIATR-GAYNSQFRIVLPSGETRHLRSRAHFYVDAEGLPS-FIGAE 136

Query: 517 NDITE---------------------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            D+T                       ++S   I   A  D LTG+PNR+    RL  + 
Sbjct: 137 WDVTADVLLNAELARQKVVAEARALALEESNARIEHVADHDYLTGLPNRRLLDKRLAEL- 195

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
              A        V+ +D+D++K+IND  G A GD VL +   RI   +    ++AR+ G+
Sbjct: 196 --PADKSIATLAVLHLDLDQFKQINDSHGHAAGDVVLRAAALRITAAIPANGMVARVGGD 253

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L++  +  ++      +++ +   I   +  +   ASIG +        +  +L 
Sbjct: 254 EFVIVLVNFTDLTELKLITEDVQRRLRKKIRFGQEMLQSGASIGVSWS--GDRRARNLLA 311

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            ++LA+Y AK  G N VE F          +  + E+L L +E  E+   Y   +     
Sbjct: 312 ESDLALYQAKKLGRNRVEFFTWQLQEDLRSKRRLAEELKLGLERGEILPYYQVQLDARTR 371

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E++G EAL +W HP+ G ++   F+ IA+E  +   I+  +L+ + +D + W  +    P
Sbjct: 372 EVIGFEALARWKHPEKGVLAPGIFLKIADEHGLAAEIDAAILKSVLKDRLFWLLRGLAVP 431

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLR 852
             I +NI++  L D  L + ++ L       P  I     E++ + + +      +G ++
Sbjct: 432 -RIAVNISASRLADPALLDKLRKL----DIPPGVIVFELVETIFLDDSDEKLLAHIGDIK 486

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++GI + +DDFG+  + L  L  +    +K +  L+T   S+ ++  ++ SI+ +AK ++
Sbjct: 487 QMGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLVTEVVSSAEQRRVVGSIVEIAKALD 546

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ I  E     L ++GCD +Q      P       +L   
Sbjct: 547 VEVIAEGIETEAHAVVLAQLGCDGLQGYAFGYPAPAAETERLFSS 591


>gi|307730171|ref|YP_003907395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
 gi|307584706|gb|ADN58104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1003]
          Length = 604

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 123/558 (22%), Positives = 254/558 (45%), Gaps = 21/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D++   D     +  +      +G     +     +    +   D      +L+   
Sbjct: 47  GAVDLLAHVDSELRFLYVSDASLRFIGYHREYLETITLH--ELVAEADAARLDALLERAR 104

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +    +  +    + + + +R + +S+  I  +     D++  + S E ++  
Sbjct: 105 TTGNVE-KATLGLVKS--LTYPITVELRVVRSSHHGIDGFAIAGFDVSAWRASEERLIQA 161

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D LT + N+ + +  +      +         ++++DID Y+++N  LG   GD++L
Sbjct: 162 LHLDRLTNLANQSALVPAVLEAQQRADVH-GTPAALLLLDIDDYQRVNRALGYDAGDEML 220

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK----SIAMPINLL 648
               RRI  +    + +AR++ + F I++    N    A  A A+ +    +I  P    
Sbjct: 221 RDTARRILNMTSPQETVARVASDEFAILVKPAANRTDAAAAAEALARRLLTAIQQPYVFS 280

Query: 649 EREITVTASIGFASWTS----SKITSSE--MLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            +++ ++ASIG A +      +  T+ +  +L+ A+ A+  AK  GGN +  +    +  
Sbjct: 281 GQQVHLSASIGIALYPDVRHANDTTAHDTHLLRWADHALLQAKAAGGNTLAFYVPDDNPA 340

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI       +VG+EALI+W HP  G +  S F+ +
Sbjct: 341 DAERLKLEADLYDGVRNGEFSLHFQPITSSRTHGVVGVEALIRWMHPVHGLVPPSMFIPL 400

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     +I W  +      ++ +N++ +   D    + ++  I+ 
Sbjct: 401 AESVGLINFLGNWVLKVACMQLIQWDARGISLQ-YVAVNVSPQQFRDPRFTDAVREAINL 459

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R+    +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   
Sbjct: 460 TGIDPRRLVFEITESLLMHDPAHAKVLLEDLTAMGIRFAVDDFGTGYSSLAYLQRFPLAK 519

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ  
Sbjct: 520 LKIDRSFVENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEAQRSLLTEMGCDHIQGW 579

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + R
Sbjct: 580 LVCQALPSDELAQRFEAR 597


>gi|256390515|ref|YP_003112079.1| diguanylate cyclase/phosphodiesterase [Catenulispora acidiphila DSM
           44928]
 gi|256356741|gb|ACU70238.1| diguanylate cyclase/phosphodiesterase [Catenulispora acidiphila DSM
           44928]
          Length = 712

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 113/462 (24%), Positives = 210/462 (45%), Gaps = 25/462 (5%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL--------------------SATDDNL 564
           + +     +  D LT +PNR++   +  T+L                      +      
Sbjct: 240 AFDESEWQSLHDPLTALPNRKALRRQAETMLGTDTVAGNDGRSSLYSTGRAPAAVAVPPG 299

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  + ++D+D++K++ND LG A GD+++  + +R+   ++  D++ARL G+ F ++L   
Sbjct: 300 KIGLFLLDLDRFKEVNDTLGHAAGDELIREVAQRLSAAVRAEDMVARLGGDEFAVLLPGL 359

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +       A  +  ++A+P  L   ++ V AS+G A           +L++A++AMY A
Sbjct: 360 PDVEAAQQLAQRLLDAVAVPYRLHGFKLDVEASLGIALHPDDARHYDVLLRHADVAMYEA 419

Query: 685 KHRGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           K                  DR+ +  DL  A++   + + Y P     ++ +VG+EAL +
Sbjct: 420 KRSKKGYVRYDPAKDRNSPDRLGLLSDLREALDAGRIEVHYQPQASFQNDRVVGVEALAR 479

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W H   G I    F+ +AE   ++  +  ++L+   R    W       P  + +N++ +
Sbjct: 480 WRHEARGAIPPETFVKLAESSGLMARLTEYILDVSLRQAAQWWRSGYGVP--LSVNVSLR 537

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           D+      E +   +++    P  ++L  +E V++G+ +  R  L  L K+GI L+LD+F
Sbjct: 538 DIESAGFVEMVARKLAQHRVRPEALRLEVAERVLVGDAQSVRATLIGLSKLGIRLSLDNF 597

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  + L  L  +PFD +K + S + G        AI+RS I +A ++   ++A+ +   
Sbjct: 598 GTGYASLLTLRRLPFDEIKIDRSFVGGIGFDADDAAIVRSTIDLAHSLGLRVVAEGVEDS 657

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                L   GCD  Q   V+  L    I  LL  R P    T
Sbjct: 658 ATWSTLDDYGCDEAQGWLVSKALPPGEICALLALRVPSAAPT 699


>gi|330719746|gb|EGG98270.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC2047]
          Length = 401

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 105/395 (26%), Positives = 189/395 (47%), Gaps = 11/395 (2%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D +K +ND LG   GD VL  + RR+   ++  D +AR SG+ F I+L   ++ 
Sbjct: 1   MLFVDLDNFKPVNDSLGHKAGDKVLKEVARRLKSCIRASDTVARYSGDEFIILLQDVDDG 60

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  +   +  P N+  RE+   AS+G A +     T   ++ NA+ AMY AK  
Sbjct: 61  SGSLPVAENVIHEMNQPFNIDGREVFCGASVGIAIYPEDGKTGEALISNADQAMYVAKES 120

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N+   F     +    R  +   L  A+   EL + Y PI+ L   +I   E+L++W 
Sbjct: 121 GRNNWHYFTDEMQQQSEKRQRLHSKLVSAISKKELTVHYQPIMNLSTGKITKCESLVRWF 180

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 +S+ EF+ +AEE+ +I  I+ ++LE+  R++     Q     + + IN++ +  
Sbjct: 181 EEDGSQVSTEEFIGLAEEMGVINDIDFYVLEQAGRELYELAQQQ-QQDVGLSINVSPRIF 239

Query: 806 L--DNELCEGMQALIS-KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              D  L   +  +I+         + +  +E V+  +  ++   L +L++ GIS+ +DD
Sbjct: 240 SAKDKSLSRWISLIIAVAEKID---VTVEITERVLTQDSRKALQALTQLKEAGISIAIDD 296

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P D +K + S +     ++    +  ++I +A  +   ++A+ I  
Sbjct: 297 FGTGYSSLSYLTKFPIDYIKIDRSFIANIGISQSDETLTETVIGLANKLSMRVVAEGIET 356

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +  L  +GCDY Q   +  P   +   K L  
Sbjct: 357 QQQLDFLKDLGCDYAQGYLLGKPQVLSEFAKQLAN 391


>gi|298484681|ref|ZP_07002784.1| GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160821|gb|EFI01839.1| GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 554

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 210/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F   LT  L      +     +  +D+D +++
Sbjct: 110 VHERSRLEDSLRRLVGQDPLTGIANRQGFQALLTERLA-----EGGSLALGHLDLDNFRR 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLSEPYWVDGESLLLGCSLGIAHSQARPE-ADPLMWHAHIAMRQAKSTQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWRHQARGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 463 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 522

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 523 VQGYLISRPLPIADLVAYLRSE 544


>gi|163735548|ref|ZP_02142980.1| EAL/GGDEF/PAS domain protein [Roseobacter litoralis Och 149]
 gi|161391168|gb|EDQ15505.1| EAL/GGDEF/PAS domain protein [Roseobacter litoralis Och 149]
          Length = 866

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/621 (20%), Positives = 259/621 (41%), Gaps = 25/621 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               IGL + +T      +        +    +       + +L +         + E  
Sbjct: 235 VFESIGLDLVLTAISVAMVALLLPFALMAFSGMRAIVRPHKDLLESQNLLAEKQGELEEL 294

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRT 466
           +     + + V   D     +       T+ G +     G   R  L           R 
Sbjct: 295 AQIAEMASESVTVTDENTRIIWVNRAFTTMTGFSVEEAVGQTPRQLLQG--PETNKEARN 352

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   V  RR  +Q E      D   +W+ + I P+ +     LR+  IA D+TE K++ 
Sbjct: 353 EIRQAVQARR-PVQTEIINYHKDGSRYWIKLSIAPLISLRTGELRFTAIATDVTEAKEAQ 411

Query: 527 E-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
                        A  D LT +PNR+   + L + +  SA       T++ +D+D +K +
Sbjct: 412 HTISEAKRETEHQARHDPLTALPNRRYLDEVLESEVCNSAAAR----TLIRVDLDHFKNV 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG A GD VLV +   +   +   D+ AR+ G+ F I+L  + N+ K       +R 
Sbjct: 468 NDTLGHAAGDFVLVEVANCLRRSIGPNDLAARVGGDEFVILLAVDGNTDKAKALTEKLRV 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +   +    +   + AS G A+ +   + + ++LK+A+ A+Y AK  G N    +    
Sbjct: 528 QLGTDMVFEGKTCRIGASFGIATASEGLVGNEDLLKSADAALYVAKDTGRNTTTLYTPDV 587

Query: 700 FRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +   +  +  ++   +   E    + P I  + EE+VG+EAL++W HP  G +  +EF
Sbjct: 588 HHAVLAKRKLSSEIEQGIARGEFIAFFQPQIDALTEELVGVEALVRWWHPTRGILPPNEF 647

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+L ++  I+  +       +    +     P  I  N+    L++  + + +   
Sbjct: 648 LKVAEQLRILSDIDRQVFAYGLDCMRILNEDGLRIP-KISFNVGMHQLMNP-VIDYLAGQ 705

Query: 818 ISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +       +R+ L   ESV++  +    +  +  LR +G ++ +DDFG+  + +  L  +
Sbjct: 706 VK---IGNTRVSLEVLESVLIEEDASGFQARISELRDMGFTIEVDDFGSGHASVVGLKAL 762

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +  L+     +     +++S++ + K +  ++ A+ I        +  +GCD 
Sbjct: 763 NPDIMKLDRVLVAPVTESASARTLIKSMVEIGKALGISVTAEGIETAEHAAIMRDLGCDT 822

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q  + A P+ F+ + + +K+
Sbjct: 823 FQGYYFARPMDFDQLREFIKD 843


>gi|254507235|ref|ZP_05119372.1| eal and ggdef domain containing protein [Vibrio parahaemolyticus
           16]
 gi|219549945|gb|EED26933.1| eal and ggdef domain containing protein [Vibrio parahaemolyticus
           16]
          Length = 785

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 218/432 (50%), Gaps = 7/432 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A +D+LTG+ NR +    +   L           +++ ID+D++K IND +G   GD +
Sbjct: 351 QAVKDSLTGLSNRSALAQEVELRLAQLKLGQTKGFSILFIDLDRFKVINDSMGHLHGDRL 410

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +R+    +  D+  R  G+ F I L    +  +++       + ++ P  L  + 
Sbjct: 411 LQLVAQRLTANCRNHDVSFRFGGDEFVICLPELTDKQRVSQICKRYAQLLSQPYILDGQR 470

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
             + ASIG +  T    + +E+L+ A+ AMY AK    + V  F  + F+  +    +++
Sbjct: 471 CYIGASIGISIVTDYNRSLTEILREADTAMYQAKSSSHDKVVFFHETMFQKAKQRFTLEQ 530

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   +L LVY PI     ++IVG E+L++W+HPK+G++S  EF+ IAEE  +I +
Sbjct: 531 ELTNALALKQLSLVYQPIYETQSDDIVGFESLLRWNHPKFGHVSPDEFIPIAEETGLIIS 590

Query: 770 INLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           I  ++ +   + +   W D A      I IN+++K      + + +  L++   +    I
Sbjct: 591 IGDWVAKECCKTLQRLWHDPAIKVMPRININVSAKQFESEHIYKTLSRLLNHCDFPAHFI 650

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES+++ + + S   L R++ +GI+L LDDFGT  S LS +   P D +K + S +
Sbjct: 651 GVEITESMLLSD-DCSAQQLQRIKDLGITLYLDDFGTGYSSLSVINDYPVDVIKVDRSFV 709

Query: 889 TGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +          ++ ++II +A  I+  ++A+ +     +  LT+  C Y+Q    + P+ 
Sbjct: 710 SRIALGQTNADSLCQAIINLAHTIDLKVVAEGVETPQQLAILTQYQCHYVQGYLKSKPVS 769

Query: 946 FNSILKLLKERF 957
              + + L ++ 
Sbjct: 770 VCKLEQCLNQQN 781


>gi|157376416|ref|YP_001475016.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sediminis HAW-EB3]
 gi|157318790|gb|ABV37888.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sediminis HAW-EB3]
          Length = 645

 Score =  416 bits (1070), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 197/438 (44%), Gaps = 6/438 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I  +  +   +  +   D LTG+P R   +D LT +L  S   +    TV+   + K
Sbjct: 205 IREIENRTSAEFSLEYSKNYDELTGLPMRSGLIDSLTQMLKQSKASET--VTVLYFGLRK 262

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  +GD VL   ++R+ + L    ++AR++G+ F I    +  +    +   
Sbjct: 263 FKSINDSYGYLIGDQVLSQFSQRLKQYLDKDTLIARIAGSEFVIARSHKKTASNDLELIT 322

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +      P +L    IT+ + +G A + +   T+ E+L+ +  AM  +K  G      +
Sbjct: 323 KILDCCNAPFSLAGFTITIPSCMGIAQFPTDATTAEELLQKSSAAMSISKTEGVRYSFFN 382

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               S    R  ++  L  A+ N ELYL Y P++ L    I+G EAL++W +P  G +  
Sbjct: 383 QDTQSSIEQRYQLESHLVDALNNQELYLNYQPLVCLKTHRILGAEALLRWHNPVLGQVPP 442

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AE    I  I  F+L         W+         I INI+          E +
Sbjct: 443 DKFINLAEHNGQIIEIGNFVLHSALAQAAHWQALQ-QSDFRIAINISPLQFRAPNFAEHI 501

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L++      + ++L  +E +++ +   +   + +L+  GI ++LDDFGT  S LSYL 
Sbjct: 502 ADLLTLYQLPTTSLELEITEGILLQDEHLAHDSIKKLQAQGIRISLDDFGTGYSSLSYLQ 561

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              F+T+K +   +T     E+   + R+II M K +   +IA+ +  +   + +    C
Sbjct: 562 KYSFNTLKIDRCFITNLEKNEQDRELTRAIIAMGKKLNLHVIAEGVETQEQDRFIQSEDC 621

Query: 933 DYIQDSHVASPLGFNSIL 950
           DY Q      P   +   
Sbjct: 622 DYGQGYLYGKPTSADEFE 639


>gi|81299627|ref|YP_399835.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|81168508|gb|ABB56848.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
          Length = 681

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 131/562 (23%), Positives = 256/562 (45%), Gaps = 13/562 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     +Q LA+  S D++   +           +      +  S+ G     L      
Sbjct: 123 LRHRLRQQELALEHSSDLMIRCNNRGFITWANQALLERQNKSLDSIVGIDFTQL-RTQPT 181

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R     +L +        L      +  + +F+ +  ++ P+ + +G++   + +  D+
Sbjct: 182 ERHTLLQMLRT-----GQALNAMVEYQTEEKEFYLVQEKLLPILSDDGELETIVIVQQDL 236

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q  +          D LTG+PNR+     +   L    T       ++ I++D+++++
Sbjct: 237 TFQAAAEIRTQQQLQTDALTGLPNRKGMYQSIRHNLGRVETHKQ-PFALLRINLDRFQRV 295

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +L SL   +  +L +   LA L G+ F  ++       +    A  +R 
Sbjct: 296 NDAAGYHFGDYLLRSLALNLRRVLGYGTELACLGGDEFAAVIAPCYQEEEAIAIADEVRS 355

Query: 640 SIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +IA+  +L     I++TASIG      + +T   +L  A  AM+ AK RGG+    +R+ 
Sbjct: 356 AIAISGSLAAAAGISLTASIGIVLV-DTNLTEEMVLDRANQAMFAAKRRGGDCTVIYRLP 414

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              S R    ++  L  A+   EL L Y PII L   +I+ LEAL++W+HP +G IS + 
Sbjct: 415 LHDSIRQEAALQFALRQAIAEQELKLAYQPIISLRTGQIISLEALLRWNHPHFGYISPAL 474

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+   I+++  + +      +  W  Q ++  + + +N +  DL        ++ 
Sbjct: 475 FIPLAEDSGQIESLGEWAVHEACHQLAEWAKQPDLAHLRVAVNCSFVDLKTERWAATVKT 534

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  +   PS++ + ++ES +  +P  +  L   L+ +G+ + LDDFG+  S ++YL   
Sbjct: 535 ALQSSQLPPSQLIVEYTESAIAKDPAAAIALSSYLQDLGVDVALDDFGSGYSSMAYLIQF 594

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K + SL+T     E+  A++R+II +AK +     A+ +     ++ L   GCD+
Sbjct: 595 QAQGLKIDRSLITPIVEDERSQAVVRTIIDLAKRLGLRTTAEGVEEREQLELLHSWGCDF 654

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q  + + PL  + +   ++  
Sbjct: 655 AQGFYFSRPLLADDLPDFIRNY 676


>gi|218462217|ref|ZP_03502308.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 441

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 272/439 (61%), Positives = 339/439 (77%)

Query: 55  NQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVG 114
           NQGE FQV TAA  DGI RRIEV ASS  H+GDWAVFALAN S+ QLER+IV PH+RLV 
Sbjct: 3   NQGEAFQVSTAAGADGIHRRIEVRASSENHQGDWAVFALANVSEEQLERVIVAPHFRLVN 62

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIY 174
           S  F PDLGS+RI ++TPSEGF+LDR P+ ++DVFRIT+NPGAV+TF+ E+STP LPQIY
Sbjct: 63  SKLFWPDLGSQRISAITPSEGFALDRQPSDEADVFRITLNPGAVITFVAELSTPELPQIY 122

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISI 234
           LWEPN YKDT+N+FTLYRGI++G+A LLA+FLTI ++V  +SML  T A+AW VLGYI +
Sbjct: 123 LWEPNAYKDTINAFTLYRGIVLGIAGLLAVFLTILFVVKGTSMLPATAALAWAVLGYICV 182

Query: 235 DFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIA 294
           DFGFL KL+++ S +  IWRAC+E+AL+SS +IFLF YL+ NRWHA +GY T + +  +A
Sbjct: 183 DFGFLGKLISVASADQRIWRACAEVALASSFVIFLFTYLNLNRWHAHLGYATLAWVLGLA 242

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           +LF ++ Y P + A IAR++ A         IIY G   Y+RA+LL+PAW L  +W  G 
Sbjct: 243 LLFGVAIYDPSIAAGIARLSFALTAATGLLLIIYLGFNRYDRAILLVPAWALTLVWLFGA 302

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
           W+ +T RLDNDIIQPAL GGLVLIV+LIGFTV+QH  A G F QG+FSD ERQSLA+ GS
Sbjct: 303 WLTVTGRLDNDIIQPALGGGLVLIVLLIGFTVMQHAFAGGAFQQGLFSDLERQSLALTGS 362

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           GD+VWDWD+ RDRV T PD++  LGL+ G+MHG  RNWLP +H +DRD FR  LD  + +
Sbjct: 363 GDMVWDWDVARDRVVTIPDVSVKLGLSPGTMHGAARNWLPRLHPDDRDRFRATLDVLLEH 422

Query: 475 RRGRLQYEFRVRAADNQFH 493
           RRGRL +EFR+RA D  FH
Sbjct: 423 RRGRLNHEFRIRAEDGHFH 441


>gi|258514078|ref|YP_003190300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfotomaculum acetoxidans DSM 771]
 gi|257777783|gb|ACV61677.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Desulfotomaculum acetoxidans DSM 771]
          Length = 1278

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/585 (20%), Positives = 241/585 (41%), Gaps = 31/585 (5%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            F ++Q +       + +    ++    +       +  D  +  +     +  + G+++ 
Sbjct: 695  FGIVQDITERKKNEEKLHMARQQLLDIIEFLPFATFVVDGRKTVIAWNKAMEELTGVSNA 754

Query: 444  SMHGPIRN-----------WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-ADNQ 491
             + G                   I   D++     L  F+  +   L  E  V     + 
Sbjct: 755  EVFGKDDYAEHLFGYSRPLLTDLIFCEDKE--TEALYEFIERKGNTLYAESHVNFIKKST 812

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
               M     P+ ++ G+++  I    DITE++   + +   A  D LTGI NR S    L
Sbjct: 813  EIVMWASASPLFDNAGNLVGAIETIRDITERRNMEKELKYLASHDFLTGIHNRYSLEKCL 872

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               +   A  + ++  ++ ID+D +K +ND LG A GD +L +L+  IG  L+    + R
Sbjct: 873  EQAVKKVA--EGVKSALLFIDLDNFKLVNDTLGHAAGDQLLKTLSATIGSFLQGGHRIFR 930

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKIT 669
              G+ F ++L +                       L   +    +T SIG        + 
Sbjct: 931  FGGDEFAVLLENVTVEEAGMTAENLRLLIEEHEFCLTMYKTCFNMTISIGIVII-DGILD 989

Query: 670  SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYH 725
              ++L  A+ ++Y AK  G N V   +     + R+         +  A++     L   
Sbjct: 990  FHKILAYADNSLYKAKEGGRNRVVFAQAGDDVTARMSETNHKIALIKTALKEDRFILYLQ 1049

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P++R+ D +I   E LI+        IS + F+ +AE   +I  I+ ++++   + ++ +
Sbjct: 1050 PVVRMKDGKITHHETLIRMLGDNGEIISPNYFLTVAERFGLIAQIDRWVVQAAMKLLMEY 1109

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                  P + + IN++   + D  L + ++  I  +    SRI    +E+  M +  ++ 
Sbjct: 1110 ------PDLKLFINLSGVSMGDMSLLDAIEKDIIGSNLDTSRIGFEITETSAMRDIRQAE 1163

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
              +GR++K+G S  LDDFG   S  SYL  +P D +K +G+ +          A++ S+ 
Sbjct: 1164 EWIGRIKKLGCSFALDDFGVGFSSFSYLKILPVDYLKIDGTFVCDIYKDSTHAALVSSMN 1223

Query: 904  PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +A+ +    IA+ +  +  I  L  +G +Y Q  ++A P    +
Sbjct: 1224 TIARTLGKKTIAEFVENQQIINMLIEIGVEYGQGFYLAEPSPVPA 1268



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V + +         +       + A   +    W+WDI  D++  + +I  +L + +G
Sbjct: 567 VGVTREITEVKRIVNALRESEAGLAKAQRIARVGNWEWDIENDKIYWSDEIYHMLNMKTG 626

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              G   + + +IH +DRD F+  ++  +   + R   ++R+         +  +   + 
Sbjct: 627 EFGGNFESLMDFIHQDDRDEFKKSIEIALNENK-RSCIDYRIITPGGVIRAVYGQGEVIF 685

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILC 531
           N  G  +R  GI  DITE+KK+ E +  
Sbjct: 686 NERGKPVRMFGIVQDITERKKNEEKLHM 713



 Score = 41.9 bits (97), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 16/178 (8%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           I     +   ++  +         +   +      +  ++      +G+    E     V
Sbjct: 412 ILSSGNLLGVINLYLKTGYQCNCGLEKFLSSVANTLALIIKRKQAEKGLRESEELFRTLV 471

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY----IHINDRDNFRT 466
               DI++  D  ++ V    +     G+    + G    +        IH        +
Sbjct: 472 NSMDDIIFTLDNNQNYVGVYGNGIRRSGIDPDQIIGKTPMDVYDLKSAEIH-------MS 524

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              S +  +    +             +    + PM N    I   +G+  +ITE K+
Sbjct: 525 ANQSVLTGKSLAYE---WSADTPGGIKYYQTFLSPMKNDE-KITGLVGVTREITEVKR 578



 Score = 41.5 bits (96), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 7/123 (5%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R +  V  + D+++  D   + +       +  G +S  +       + YI   +R+   
Sbjct: 21  RYANLVKYANDMIFLLDHNLNIIDFNDRTLSSYGYSSEELLSLSMKNIRYI---ERETTD 77

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +  +   +  L +E   +  D+    +   ++    S+G    Y+    DIT +K+ 
Sbjct: 78  EQFE--LVEEKDGLVFEDVHQRKDSTTFAVESSVK-FIESDGK-GYYLLYNRDITHRKER 133

Query: 526 LEG 528
              
Sbjct: 134 ELR 136


>gi|54293995|ref|YP_126410.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens]
 gi|53753827|emb|CAH15290.1| hypothetical protein lpl1054 [Legionella pneumophila str. Lens]
 gi|307609821|emb|CBW99338.1| hypothetical protein LPW_11161 [Legionella pneumophila 130b]
          Length = 506

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 207/441 (46%), Gaps = 5/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++  + +   A  D L+ +PNR  F   L   +  S         ++ ID+D +K +N
Sbjct: 63  DLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGR-HLALLSIDLDFFKNVN 121

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L  + +R+   L+  D +ARL G+ F +IL   NN  +    A  M + 
Sbjct: 122 DRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQK 181

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P ++    + +  SIG A +  +   +  + KNA++A+Y+AK  G N+ + F  S  
Sbjct: 182 MGKPFHIKGHTVMIGISIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSLR 241

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +     +    +L LA+E  E +LVY P + L    +VG+E L++W HPK G +   EF+
Sbjct: 242 KQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNTMVGMEVLLRWQHPKRGVVFPDEFI 301

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  ++L    R  + W+ +       + INI+            ++ ++
Sbjct: 302 AVAEHFNLIIPIGEWVLRTACRQYVDWKKRYAPFNCTLAINISLHQFQHKGFISSVKHIL 361

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +E+  +    +    L  LR +GI L  D+FG+  S LS+L   P 
Sbjct: 362 QEYQMPSDWLELEITEATAVNFLGKIEETLSALRNMGIKLAFDNFGSGYSFLSHLKNSPI 421

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            ++K   +L+  +   E    I++S I +++ +   ++   +  E  +  L    C  +Q
Sbjct: 422 QSIKLKQALIEDAHLRENDNLIIKSTIALSQELGLNVVVGGVETEEQLNFLRSSHCFEVQ 481

Query: 937 DSHVASPLGFNSILKLLKERF 957
             + + PL    + + ++ER 
Sbjct: 482 GYYSSKPLTVVQMTQFIEERN 502


>gi|262403413|ref|ZP_06079971.1| EAL domain protein [Vibrio sp. RC586]
 gi|262349917|gb|EEY99052.1| EAL domain protein [Vibrio sp. RC586]
          Length = 594

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 205/436 (47%), Gaps = 10/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K ++    ++  D LT + NR++F  +L  I      +   +  ++ +D+D +K+IND L
Sbjct: 158 KQIKRYRKDSLTDYLTSLGNRKAFHLQLHQI---QQLNQPSQYALLQVDLDDFKQINDSL 214

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRKSIA 642
           G   GD +L  L  R+  L      + RLS + F +IL  E      I      +  ++ 
Sbjct: 215 GHQQGDKLLEELGLRLRSLKNSSCQIYRLSSDEFALILHHEEQLIPAIKRTVEQLHATLH 274

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               L  R  +VT S+G A    +   +    +NA++A+  AK  G N +  F       
Sbjct: 275 QGYKLGNRLYSVTTSLGIALLEDALNDTDIWCRNADIAILKAKRSGKNCIRWFDNELHSE 334

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I+ +L +A+E ++L L Y P + +    IVG EAL++W H + G I+  +F+ +
Sbjct: 335 TIRQYQIERELNIAIEKNQLLLHYQPKVDIRSGRIVGTEALVRWQHSELGMINPGDFISV 394

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  I  +++    R +  W      P + + +N+++   L +++ + +   +  
Sbjct: 395 AEKTQQIIPIGRWVINEACRQLSEWHHSF--PDLSVSVNVSNIQFLYDDIYQVVYNALQT 452

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +E+ +M  P        +LR++GI + LDDFG   S L+YL  +P D 
Sbjct: 453 YPIPPHTLQLEITETTLMRYPNNVIHTCHQLRELGIQIALDDFGVAYSSLNYLKQLPIDV 512

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +      I+R+II +  N+   + A+ +  E  +  LT+ GCD  Q  
Sbjct: 513 IKIDRSFVDSCNDDSAGKMIVRTIIQLGHNLGKMVTAEGVDSEEKLAVLTKEGCDKYQGF 572

Query: 939 HVASPLGFNSILKLLK 954
             + PL    +  L++
Sbjct: 573 LFSRPLPAEELEALMQ 588


>gi|309388507|gb|ADO76387.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Halanaerobium praevalens DSM 2228]
          Length = 813

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 209/440 (47%), Gaps = 14/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     E +   AF D LT IPNR+ F++ L   L       + +  + ++DI+ +K+IN
Sbjct: 381 EITALNEELSYQAFHDPLTEIPNRRRFINILEKELK-----SDAKGALALLDINDFKEIN 435

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  + +R+         +AR  G+ F I++ + N   +I      ++  
Sbjct: 436 DNYGHIYGDRLLTEVAQRLAAFSSENIAVARYGGDEFLILIKNLN-INQIEKEVTKLKAV 494

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P  + + +I +  ++G A +     T+ +++  A++AMY AK    N+   +     
Sbjct: 495 FNQPFAIKDDQIFIKFALGIALYPEDAKTTDQLITKADIAMYEAKKIKKNNYLYYNQKMI 554

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +    IK  L  A++N+   L Y P I L   +   LEAL++         S  EF+
Sbjct: 555 EQLKRRKKIKNKLQNALKNNGFSLKYQPQINLKTGQADFLEALLRLKDNS---FSPGEFI 611

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  ++ +   + +   ++Q     I I IN ++K + D+   + ++  +
Sbjct: 612 PVAEESGLIIEIGRWVTKAAIKQLALIKNQY-QAEITISINFSAKQIRDHGYLDFLKKNL 670

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K   +   +++  +ES+++ +  ++   + +L+ IG+ + LDDFGT  S  SYL Y+  
Sbjct: 671 KKYKIAAHYLEIEITESILIED-NKAITFINQLKNIGVQIALDDFGTGYSSFSYLSYLKT 729

Query: 879 DTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D VK +  L        +I  L ++I +  +++  ++A+ +  +    +L    CDYIQ 
Sbjct: 730 DKVKLDKFLADNFMAADKIDTLINLINLLHSLDLPVVAEGVETKEQYLQLKAHNCDYIQG 789

Query: 938 SHVASPLGFNSILKLLKERF 957
            + + PL  + I  +L + +
Sbjct: 790 YYFSKPLAKDQIKAILAKNY 809


>gi|153833825|ref|ZP_01986492.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
 gi|148869883|gb|EDL68851.1| sensory box/ggdef family protein [Vibrio harveyi HY01]
          Length = 1054

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/588 (18%), Positives = 227/588 (38%), Gaps = 17/588 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 470  LFEARDITSRKAMEDKLYHRESSLRNYYEQQPVMMVTLDSNNRVQEVNRFAQQLLGYQPL 529

Query: 444  SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G   ++L   + +++  + R +L        G  + E   R AD    W+   IRP+
Sbjct: 530  DMLG---HYLCSFYCDEKALYPRQVLLQPQQVMNGVWRREIEYRHADGHSVWVRENIRPL 586

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +S+    + + +  DITE KK  + +   A  D LT   NR  F   L T L    +  
Sbjct: 587  RDSD----QLLIVGEDITETKKLAKQLEYQARYDLLTDTYNRNYFELELQTALREVESHR 642

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F ++L 
Sbjct: 643  RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNAVLARMGGDEFAVLLK 701

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +    I      +           + ++ ++ S+G      +  T   +   A+ A +
Sbjct: 702  DCDEHGAINIAKQIISTLGEQIFRWEDTQLFMSCSVGVRIIDHTAETPQMVHAQADSACH 761

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMD-EEIVG 737
             AK +G N    F + +       ++      +  A+ +  L L    I  L      + 
Sbjct: 762  AAKEQGRNRYNLFSLDNEELRHRQLEMQSVNLVHEALSSKRLELFAQRIFNLSGEGSPLC 821

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +S   F+  AE   +   I+  ++ +      +  +          
Sbjct: 822  FEILVRIRDAQGNYLSPGVFVPAAERYNIAHWIDKQVISQTLEWFEARPEVVEQLG-RCA 880

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + + E  + + A +  +     +I L  +E+  M N +++     R++ +G  
Sbjct: 881  INLSGQSMGNQEFIDFLLARLQSSSIPCEKICLEITETAAMSNIDQALDFFTRVKALGCL 940

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 941  IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDINVNEMDRVMVRSINDLAKQMGKVTVA 1000

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            + +  +     L  +G DY Q   +  P     ++  L++  P  + +
Sbjct: 1001 EFVENDQVRACLVDLGVDYGQGYGIGHPKPLAELVHELQQLDPKSRKS 1048


>gi|257482510|ref|ZP_05636551.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289648074|ref|ZP_06479417.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330867952|gb|EGH02661.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|331012842|gb|EGH92898.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 545

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 209/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLTARLAEGGSLALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLSEPYWVDGESLLLGCSLGIAHSQTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWRHQARGLLPPSE 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S   +L  +
Sbjct: 394 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 454 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 513

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 514 VQGYLISRPLPIADLVAYLRSE 535


>gi|86137468|ref|ZP_01056045.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Roseobacter
           sp. MED193]
 gi|85825803|gb|EAQ46001.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Roseobacter
           sp. MED193]
          Length = 577

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/459 (27%), Positives = 228/459 (49%), Gaps = 41/459 (8%)

Query: 528 GILCNAFQDNLTGIPNRQ---SFLDRLTTI-LDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   A+ D +TG+PNR      L RLT   L  ++       TV+ ID+D +K++ND+ 
Sbjct: 121 RMNVLAYADGVTGLPNRAVIFHLLSRLTQAPLVDAS-------TVLFIDLDGFKRVNDLH 173

Query: 584 GIAVGDDVLVSLTRRIGELL--------------------KFPDIL-ARLSGNRFGIILI 622
           G   GDD+L  +++RI   L                       DI+ AR+SG+ F ++L 
Sbjct: 174 GHEAGDDLLRGVSQRIASALGRSLEELETCMSPTGELCDEVPNDIVLARVSGDEFVVLLP 233

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            E    +    A  + + +A P  + E  + + ASIG A++    +T  E+L  A+LAMY
Sbjct: 234 PETGDPEA--LASNILEGLAEPFQISEATVHIGASIGLANYPEDAVTPEELLNMADLAMY 291

Query: 683 HAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N + +         +    ++ DL  A+EN E+ L Y P     D   V +EA
Sbjct: 292 EAKRNGRNRLVATSPVLRAKWQDRRDVERDLRRALENDEIVLAYQPRFATTDMHCVAVEA 351

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +W HP+ G+IS + F+ IAE+  MI  +   + E+  +    W+DQ     + + +N+
Sbjct: 352 LARWSHPERGDISPAVFVPIAEQAGMIPILGAVVFEKAVQQCRRWQDQGLE--LSVSVNV 409

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +  +    +L   + +++ +     S +++  +E++ M + E ++  +  LR  G  + +
Sbjct: 410 SPAEFAAPDLVSRLTSVLRRHGVDASLVEIEITETIAMDDFETTQEQMISLRGAGFRIAI 469

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LS L  +P+ ++K + SL+  S+E    + ILR++  MAK +    IA+ +
Sbjct: 470 DDFGTGYSNLSQLSRLPYTSMKLDRSLILDSSEGDIGLKILRAVTNMAKALGQATIAEGV 529

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL-LKER 956
             +   + +  +GCD +Q  ++A P+  + +    L+ R
Sbjct: 530 ETQAQYEVVKALGCDEVQGFYLARPMTPHDVHDFVLQSR 568


>gi|304396822|ref|ZP_07378702.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
 gi|304355618|gb|EFM19985.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Pantoea sp.
           aB]
          Length = 694

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 214/446 (47%), Gaps = 10/446 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  + + + +   A  DNLT +PNR     +L   +  +  ++N R  V+ +D+D +K +
Sbjct: 247 TRLRHANQELRQLAMHDNLTALPNRAMLEQQLDLAIKQAMLNEN-RFAVIYMDLDGFKAV 305

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD +LV+++ R+   L    +L RL G+ F  ++    +       A  + K
Sbjct: 306 NDTWGHHVGDRLLVAVSERLRSQLSNTMLLVRLGGDEFV-LMAEACDVTPARQLAQKLVK 364

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
            I+ P  L    + V+ S G A +        E+L NA+ AMYH KH G N    F   +
Sbjct: 365 VISTPFELDRYVLHVSLSAGIAIFPLHGRNRQELLFNADSAMYHTKHSGRNGWCLFEPAM 424

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S     ++ +  DL  A++  ++ L Y P  R     ++G EAL++W HP+ G ++   F
Sbjct: 425 SDATQHQLALANDLWEAIDRQQMRLFYQPKFRSGGTRLMGFEALLRWQHPQRGLLTPELF 484

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+   I A+  ++++   R +  W +Q       + +N+++      +L   +   
Sbjct: 485 LPRAEKTGQIVALGNWVIDEACRQLKIWHNQ-GNSDWTVSVNLSALQFHQRDLLHTLMQT 543

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++   S S + L  +E++ M +P  S+  +  L++ G+S+ +D+FG   + L +L  + 
Sbjct: 544 LARYQLSGSALMLEITEAIAMRDPLFSQQRIRELQQAGVSVAIDNFGIGYANLLHLKDLD 603

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +       +   ++ +++ +A+++   ++A+ +  E     LT +G D +
Sbjct: 604 ASELKIDRSFINCLRPGSEDATVVSAMLTLAQSLNLRMVAEGVETEEQQHLLTSLGFDAL 663

Query: 936 QDSHVASPLGFNSILKLLKERFPLVK 961
           Q   +  P   + I      RFP ++
Sbjct: 664 QGYLLGKPTPADRIEAF---RFPGLR 686


>gi|160877145|ref|YP_001556461.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160862667|gb|ABX51201.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
 gi|315269350|gb|ADT96203.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 859

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 120/578 (20%), Positives = 230/578 (39%), Gaps = 23/578 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER  + +    + V   D+    +   P   ++L     S +   
Sbjct: 293 ASRVNSLLARIYQQKERAKITLESIAEAVILTDVDAKVIYMNPRAESLL--DVASCYALD 350

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           ++    +   D+ N + +              + ++  A      M   I  + N + +I
Sbjct: 351 QSLASLLKAGDQLN-QAVFTCIRLGESSPQVEKIKLLTA--SPRIMERSISNLRNHDKEI 407

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DIT+++     +   A  D++TG+ NRQ+F ++L      + T       V 
Sbjct: 408 VGTVVVLRDITQEELLKHQLQKRANFDSITGLLNRQAFDEQLPQFAASAKT-----IAVC 462

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +L  + + +   L   + LARL G+ FG+++ + +    
Sbjct: 463 YLDLEQFKLINDSCGHTAGDRMLAMVAKAMQACLGPQEQLARLGGDEFGLVICNRSALSV 522

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     +N       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 523 AQLLKQMIAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYIDAQELLKDADIACIAAKAKGA 582

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI  L    +   +E L++ 
Sbjct: 583 NQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGSGPQRQRMEILLRI 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +         P   I IN++   
Sbjct: 643 QEPCGRILAPAQFIAAAERFKLMPDIDKEVIRKAFLWLSLHP--VLWPDHCISINLSGNS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             I    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 701 LGAEGMVEYIAQQQHIFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 761 SGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 820

Query: 923 DIKELTRMGCDYIQDSHVASPLGF----NSILKLLKER 956
            I  L  +G +Y Q   +  P             L +R
Sbjct: 821 IIDRLLSIGINYAQGYAIGRPQPLANYREQYEMRLAQR 858


>gi|330810075|ref|YP_004354537.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378183|gb|AEA69533.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 857

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/589 (20%), Positives = 255/589 (43%), Gaps = 21/589 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            ++   VL   L      +   A+    +  +    ER       S D +W+ D      
Sbjct: 277 GILALAVLRHALAMLRAQERQYASLLAHRKALERSEERFRDIAEVSSDWLWEVDSTGTLT 336

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVR 486
             +     + G +     G   +    +H +       + +L          L  E+  R
Sbjct: 337 YLSERFDQVTGFSPTEWLGKPLH--RLLHPHGGSISIAQWLLGGANSVSSAPLLCEYTAR 394

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             + +     + +R +       L + G A DIT++ ++L  I   +  D LTG+ NR  
Sbjct: 395 --NQRIRTCKLSVRAIEAG---TLGFRGTATDITDELRALAQIKHLSLHDPLTGLANRNR 449

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             D L   L  +         ++ +D+D++K +ND LG AVGD VL  +   + + ++  
Sbjct: 450 LFDCLREHLGRADR---PPLALLNLDMDRFKPVNDSLGHAVGDKVLKEVAHILQQNVRGT 506

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++ARL G+ F I++    ++  +      +   +  P++L    + +  SIG A     
Sbjct: 507 DLVARLGGDEFVIVMPDPGDASDLDQLCARLIDCMQRPMHLDGNTLYLGVSIGVAWSQPG 566

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVY 724
              + E+L++A++A+Y AK  G N    +  +      DR   ++ L  A++  +L L Y
Sbjct: 567 DERADELLRHADIALYAAKAAGRNTWRVYVEAMGNLARDRRRYEQQLRDAMQRDQLELRY 626

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P   +  E++ G EA   W HP+ G +  ++F+ +AE    ++ +  +ML  +  +  +
Sbjct: 627 LPRFDVSAEQLHGFEAQTFWHHPEKGELGGADFIPVAETSGQLEELGTWMLINVCEEAAT 686

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W        + + I ++ +    + L   +Q  +  +  +P R+ L  +E V++ + +  
Sbjct: 687 WPSA-----VNVSIAVSPRWFNSSFLLNQVQEALETSGLAPHRLTLEVAEGVLLADHKTV 741

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSII 903
              L  L+ +G+ + +D FGT  + L  +   PFD ++F+ +++T    E     + ++I
Sbjct: 742 ASTLHALKDLGVRINIDKFGTSIASLREVLDQPFDGIRFDRNILTQLGLEDDKEGVLAMI 801

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +++++   + A+ I       +L  + CD++Q  +  + L  + +   
Sbjct: 802 RLSRSVGLMVTAEGIENARQFSQLRNVSCDHVQGPYFGAALARSEMASF 850


>gi|209547167|ref|YP_002279085.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538411|gb|ACI58345.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 721

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 204/425 (48%), Gaps = 16/425 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+ NR    ++L   +      + L  ++++ID+D +K +ND  G AVGD+
Sbjct: 298 YEAKHDALTGLLNRVGCFEQLEKAV----QSNVLGASLLMIDLDGFKPVNDAWGHAVGDE 353

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L S+  R+ + L    I+ARL G+ F +I   +         A  +  S++ P  +  R
Sbjct: 354 LLRSVAARLVDHLPDGAIVARLGGDEFAVISRDQVLKDGA--LAARILTSLSSPFVIGGR 411

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708
            I ++ S+G A+ +     ++E+L+ A+LA+Y +K  G      +        ++   ++
Sbjct: 412 TIEISCSVGAANMSDPGTNAAELLRRADLALYRSKDMGRGRSMIYSPSLDEDAANTSDLE 471

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+ + ++  V+ P++     EI G+EAL +W     G+++   F+ +AE   +I 
Sbjct: 472 QELRHALASGQIRTVFQPLVDATTREIRGVEALARWKSATRGDVTPEVFISLAERAGLID 531

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L    R+   W      P + + +N++   L +      +  ++++  + P R+
Sbjct: 532 QLGFEVLRLSVREASRW------PGVGVAVNVSPLQLRNPYFASQVGDILAQADFDPMRL 585

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E V++ NP++++     LR +GI + LDDFG   + +  L    FD +K + SL+
Sbjct: 586 TIEVTEGVLISNPDQAKRAFKTLRNMGIKIALDDFGCGYASIGALREFGFDRMKIDRSLI 645

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     A+L + I +A  +   + A+ I  E     +   GCD +Q    + P   
Sbjct: 646 VALDHDDRDGAVLHATIALANALHLPVTAEGIETEEQAAAVRLSGCDELQGYLFSRPASA 705

Query: 947 NSILK 951
           + I +
Sbjct: 706 DQITQ 710


>gi|229593327|ref|YP_002875446.1| putative EAL/GGDEF domain-containing protein [Pseudomonas
           fluorescens SBW25]
 gi|229365193|emb|CAY53469.1| putative EAL/GGDEF domain protein [Pseudomonas fluorescens SBW25]
          Length = 554

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 210/440 (47%), Gaps = 9/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+      +   A QD LTGI NRQ F   L   L     +D     +  +D+D ++ 
Sbjct: 110 VRERGLLENTLQRLAEQDPLTGIANRQGFQTLLAARLA---ENDGRGLALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L+  D LARL  + F +++ +     +    A  + 
Sbjct: 167 ANDALGHQAGDRLILQVVSRLKSQLEAGDQLARLGSDEFALLIDTRRAPQRAEWMAERIT 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EVMAEPYWVDGESLLIGCSLGVAHARARA-GADPLMWHAHIAMQQAKSTQGCTFHIFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRLDLDDGHIVGLEALVRWRHGERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+   R++   PP+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQDLRERGL-PPLHMAVNLSFRQFQDSQLLSTLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   +  +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G    E+   ++ ++I +A N+   ++A+ +     +  L   GCD 
Sbjct: 465 PIALLKIDKSFVGGMEEREENRKLVHAMINLAHNLNLEVVAEGVETPEQLALLRLFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q   ++ PL    ++  L 
Sbjct: 525 AQGYLISKPLPLPELVDYLT 544


>gi|291280229|ref|YP_003497064.1| signal transduction sensor histidine kinase/response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290754931|dbj|BAI81308.1| signal transduction sensor histidine kinase/response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 930

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/556 (21%), Positives = 240/556 (43%), Gaps = 20/556 (3%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462
            E    A+  S D V   DI             I G +   + G     +   ++  D +
Sbjct: 387 KEYLYKAIENSHDWVMITDINGKIEYINKAFEIISGYSKDEIIGKTPSIFKSGLY--DSE 444

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++ + D+ +             +  + +F  +   I P+   +G + +++ IA DIT++
Sbjct: 445 FYKRLWDTILNGE--VFNGVVINKKKNGEFFQLDHTIVPIK-IDGKVTKFVSIAKDITKE 501

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
               E I    + D LT + NR+ F+      ++       ++  + +IDI  +  +N+V
Sbjct: 502 VTLEEEIKRFKYFDTLTNLYNRKGFILETKKAIEKFGMLKGVKV-ICLIDIHSFSYLNEV 560

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G    D++L      +       DI+AR+S + F I L+  N   ++      + +  A
Sbjct: 561 YGFKTCDELLKKYGETLKSTFYNTDIVARVSSDEFAIFLM-INKEEELTHILDKLFEINA 619

Query: 643 MPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
            P+ +  + +I +  ++G    +   +   + L  AEL+   AK  G N    +   ++ 
Sbjct: 620 NPMKIRDDLKIKIDINVGVKILSD--LDVEDALSKAELSAKLAKKEGANTFRIYNEEINK 677

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             S      + +  A++N        PI  + D +I+G EALI+ +HP+ G I  + F+ 
Sbjct: 678 RISQHYNTLQLVLDAIKNRWFVFHLQPIYNVKDLDIIGFEALIRINHPEKGVIYPNVFID 737

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E   +++     + + I   +       +     I IN++        L E    +I 
Sbjct: 738 LVENSHLLEEFETHLFQMIIDYLNKMN--FSDKNYEISINVSVNSFK-KGLIEKYVKIIP 794

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     + I +  +E V   + E+   +L ++++ G  + +DDFGT  S LSY+  IP D
Sbjct: 795 EH--MRNNINIEITERVFAEDNEKIINILNKVKESGFKIEIDDFGTGYSSLSYMERIPAD 852

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S         +  AI+++II +A+N+    IA+ +  +   + L  +GCDY+Q 
Sbjct: 853 IIKIDMSFTQKLESCFRTKAIVKTIIQLAQNLGLKTIAEGVETKEQFEILKSLGCDYVQG 912

Query: 938 SHVASPLGFNSILKLL 953
            + + PL  + I+ L+
Sbjct: 913 YYFSKPLPLDKIVPLI 928


>gi|89900683|ref|YP_523154.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118]
 gi|89345420|gb|ABD69623.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens T118]
          Length = 1088

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/835 (20%), Positives = 325/835 (38%), Gaps = 57/835 (6%)

Query: 147  DVFRITINPGAVVTFI---MEISTPNLPQIYL------WEPNFYKDTVNSFTLYRGIIIG 197
               R+ + PG V+       E+ +     +               + V+   L + I + 
Sbjct: 261  AATRLALAPGTVMDIYQSWAELFSTAFVGMLAIMFLPRQFQIAVVENVDEAHLNKAIWLF 320

Query: 198  VASLLAIFLTIFYMVNRSSMLIPTFA---MAWVVLGYISIDFGFLSKLVNLPSGELLIWR 254
               L    L +  +     +   T        + L            +            
Sbjct: 321  PLYLFLFSLFVLPIAMGGLLHFGTSVNPDAFVLTLPLAGQQKALALLVFLGGFSAATGMV 380

Query: 255  ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
                IALS+ +   L M +       ++          +AI         ++  +  R+ 
Sbjct: 381  IVESIALSTMVCNDLVMPILLRIKALRLTERADISALLLAIRRITIVLGLLLGYTYYRLA 440

Query: 315  LASIVLYYTYFIIYHGMKGYERAVLLIPAW-------------ILIFIW---FIGLWMAI 358
              +  L     I +  +  +  A+L    W                 +W    +    A 
Sbjct: 441  GEAYALVSIGLISFAAVAQFAPALLGGIYWKGGTRSGALSGLGAGFLVWAYTLMLPAFAR 500

Query: 359  TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
            +  L   +++        L  + +        ++       + + G   +++++    +V
Sbjct: 501  SGWLPMALLEHGPFAIAQLRPLALFGLDGLDEISHAMLWSMLANVGAYLTVSIMSGQSLV 560

Query: 419  WDWDIVR--DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
                     D          +   ASGS+       + ++     +N R  L ++   R 
Sbjct: 561  EQTQAALFVDVFKHGRGAERVW-RASGSLLDLHTLMVRFL---GAENARQALVAYARQRG 616

Query: 477  GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                 E                          +   IG A   + +      I     +D
Sbjct: 617  LEWPQEI--------------DAELSRYCEAQLAGAIGTA---SARVMIASVIEEELLRD 659

Query: 537  NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +LTG+PNR   L R+   +     +      ++ + +D+++ I D LG A GD +L+++ 
Sbjct: 660  SLTGLPNRALLLTRIDDAMKRIQIESRRGFALVFLTLDRFRTITDSLGGAYGDQLLIAIA 719

Query: 597  RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            +R+G  L+  D +AR+ G  F I+L    ++   A +A  ++ ++A+  NL   E+  TA
Sbjct: 720  QRLGTGLRPGDTIARIGGESFAILLDETKDAEVAARYAEQLQSALAVGFNLEGHELFTTA 779

Query: 657  SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLA 714
            SIG     S  + + E+L++AE A ++A+ RGG   E F           + ++ +L  A
Sbjct: 780  SIGIVLGHSGYVDAGELLRDAETASHNAERRGGACYELFAADMRERVVALLEMETELRRA 839

Query: 715  VENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            V +  E  + Y P++ L    + G EAL++   P    +  SEF+ + EE  +I +I  +
Sbjct: 840  VAHGEEFLVYYQPVVSLQTGRLAGFEALVRMRRPDGKLVPPSEFIPLTEETGLIVSIGRW 899

Query: 774  MLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L    R + SW+ +    PP+ I +N+A +      L + ++A +++T  + S +KL  
Sbjct: 900  VLTEACRQMHSWQQRYPDHPPMQISVNLAGRQFTQPALLQQIEAALAETGLATSSLKLEV 959

Query: 833  SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
            +E+++M + E + + L +L  +GI L +DDFGT  S LSYL   P +T+K + S +    
Sbjct: 960  TETLLMAHAEEAAVALEKLSALGIKLLMDDFGTGYSSLSYLYRFPINTLKIDASFVRRMD 1019

Query: 893  EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
              R +  I++SI+ +A  +   IIA+ +     + +L  +  +Y Q  H   PL 
Sbjct: 1020 VDRKSADIIQSIVTLAHALNMDIIAEGVENAAQLAQLRALQVEYGQGYHFGQPLD 1074


>gi|146305295|ref|YP_001185760.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145573496|gb|ABP83028.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 557

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/451 (25%), Positives = 218/451 (48%), Gaps = 11/451 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + EQ    + +   A QD LTGI NRQ F   L   L            +  +D+D ++ 
Sbjct: 110 VREQGNLRQTLQRLAEQDPLTGIANRQGFQTLLAARLAECNGRG---LVLGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+  LL+  D +ARL  + F ++L    + L++   A  + 
Sbjct: 167 ANDALGYQAGDRLILQVVARLKSLLQPCDQIARLGSDEFALLLDVRRDPLRVESLAERIT 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +A P  +    + +  S+G A   +    +  +L +A +AM  AK + G     +   
Sbjct: 227 EVLAEPYWVDGESLLIGCSLGLAHARA-GEGADPLLWHAHIAMQQAKSQQGCVFHVYDER 285

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             RS R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G +S +E
Sbjct: 286 LNRSARSQADLEGELRRALRRDELELHYQPRLCLQSGRIVGLEALVRWQHGERGLLSPNE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  +++ R  RD+  W     +P + + IN++ +   D++L   +  
Sbjct: 346 FVPLAEETGLIVPLGYWVISRALRDM-QWLRGRGLPALHMAINLSFRQFQDSQLLPTLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++ +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LIEERGVDAQWLEFELTETAVMRRSDQVQQTMLALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G     +   ++R++I +A N+   ++A+ +     +  L + GCD 
Sbjct: 465 PITLLKIDRSFVGGMGARAENRQLVRAMINLAHNLNLEVVAEGVENIEQLDMLRQFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLL--KERFPLVKNT 963
           +Q   ++  +    + + L   +R PL+  T
Sbjct: 525 VQGYLISKAVPLAELARFLVFGQRQPLLAVT 555


>gi|52841291|ref|YP_095090.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628402|gb|AAU27143.1| sensory box/GGDEF family [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 506

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 202/436 (46%), Gaps = 5/436 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D L+ +PNR  F   L   +  S         ++ ID+D +K +ND  G 
Sbjct: 68  QKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGR-HLALLSIDLDFFKNVNDRFGH 126

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L  + +R+   L+  D +ARL G+ F +IL   NN  +    A  M + +  P 
Sbjct: 127 DVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQKMGQPF 186

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +    + +  SIG A +  +   +  + KNA++A+Y+AK  G N+ + F  S  +    
Sbjct: 187 LIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSLRKQYSK 246

Query: 706 MIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +    +L LA+E  E +LVY P + L    +VG+E L++W HPK G +   EF+ +AE 
Sbjct: 247 RLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEFISVAEH 306

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L    R  + W+         + INI+            ++ ++ +   
Sbjct: 307 FNLIIPIGEWVLRTACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHILQEYQM 366

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               ++L  +E+  +    +    L  LR +G+ L  D+FG+  S LS+L   P  ++K 
Sbjct: 367 PSDWLELEITEATAVNFLGKIEDTLSTLRNMGVKLAFDNFGSGYSFLSHLKNSPVQSIKL 426

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
             +L+  +   E    I++S I ++K +   ++   +  E  +  L    C  +Q  + +
Sbjct: 427 KQTLIEDAHLRENDNLIIKSTIALSKELGLNVVVGGVETEEQLNFLRSSHCFEVQGYYSS 486

Query: 942 SPLGFNSILKLLKERF 957
            PL    + + ++ER 
Sbjct: 487 KPLTVGQMTQFIEERN 502


>gi|167617324|ref|ZP_02385955.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis Bt4]
 gi|257141186|ref|ZP_05589448.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis E264]
          Length = 872

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 244/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 285 FVASMFLMYLALVWARRAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 344

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG ++ +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 345 NAAEQLLGYSAAACVGAPVSSVLMLLDKETGHAVDIVDEFWARDERTPIKREVHLLRRDH 404

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 405 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 464

Query: 551 LTTILDLS-ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L  + ++ D     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 465 LEIALADTTSSKDRADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 524

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 525 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 584

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+E     L  
Sbjct: 585 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALETDGFRLYV 644

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 645 QPIVHTRPDSRTPERAEVLLRMTDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 704

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 705 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 761

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 762 LASRFMGELRAIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 821

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 822 AINEVAHSMRCSTVAEHVESEVELGMLRELGIDFCQGYFFAQPSP 866


>gi|71279944|ref|YP_270726.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71145684|gb|AAZ26157.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 541

 Score =  416 bits (1069), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 219/435 (50%), Gaps = 6/435 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E I   AF D+LT +PN++   DR+   L  +A + N    V+ I ID +K +ND  G
Sbjct: 103 AEEEIKRLAFFDSLTNLPNKELCQDRIEQALARAARN-NTSIAVLFIGIDDFKAVNDQQG 161

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L  + +R+   L+  D LAR++G  F IIL + +    I  FA  +   +   
Sbjct: 162 HVGGDKLLKQIAKRLSGQLRSGDTLARITGVEFIIILETISPKDNINMFADKILLKLTKC 221

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +  +E+ +T +IG A + S      E++++A+ AM  AK +G N +  F         
Sbjct: 222 YRIAMQEVYITGNIGVALYPSDGEYGKELIQHADTAMCFAKEKGRNRLAFFSKELQEQVN 281

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +   I E L  A+E  EL L Y PII     EI+ +EAL++W++   G+++   F+ IAE
Sbjct: 282 IKKKIAEQLRGAMERDELVLHYQPIIATHSNEIIAVEALLRWNNELLGDLAPDVFIPIAE 341

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E+ +I  I  ++L +      +W+ Q   P I + IN++   L  +     +   +++T 
Sbjct: 342 EIGIITKIGDWVLAQACLQNKTWQQQ-GYPCIVMTINMSVMQLAISNYARTVSTSLTETS 400

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  ++L F+E+ +M + ++S + L  L  +G+S+ LDDFGT  S + +L     + +K
Sbjct: 401 LEPQYLELEFTENTLMKDAKQSIVQLRELSALGVSIALDDFGTGYSSIKHLAKFKLNKLK 460

Query: 883 FNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS +    E    I+  R+II +AK ++  + A+ +      + +     D +Q  H 
Sbjct: 461 IDGSFIKHIPESAGDIIATRAIIALAKQLKLHVTAEGVETANQCEFMMTNNVDSMQGYHF 520

Query: 941 ASPLGFNSILKLLKE 955
           + P+   +   LL+ 
Sbjct: 521 SRPVAAKAFELLLQS 535


>gi|237756159|ref|ZP_04584729.1| PAS fold family protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691685|gb|EEP60723.1| PAS fold family protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 957

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/568 (19%), Positives = 240/568 (42%), Gaps = 34/568 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
              AV  S   +   D           +  + G A   + G   R +   +   D   ++
Sbjct: 397 LRKAVDNSRMWLLITDSNGTIEYVNQYVIDLTGYAKEEIIGKNPRIFKSGV--QDIKLYK 454

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + D+ +          F  +  D +  ++   I P+   +G  L++I +  DIT++K  
Sbjct: 455 ELWDTILSGE--PFSSVFVNKTKDGRLIYIDQTIYPIKLKDG-TLKFISVGKDITQEKVL 511

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I    + D+LT +PN  SF  +++ ++         +  +++IDI     IN   G+
Sbjct: 512 SEEIEKYKYYDSLTWLPNFISFKIQVSEMIINKL---YKKFGLILIDIYNMSVINSSYGL 568

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             G+++L  + + + +       +AR+  ++F I++ +  N          +R ++   +
Sbjct: 569 ETGNEILKEVAKNLKKEF-PDGYVARIGSDKFAILITNIKNES---VLIYKIRDALDKDL 624

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           N  + +I ++ +     +     T  E+  NA L +  AK  G N ++ +     +    
Sbjct: 625 NTSKGKIHISYNASIVLYNEDGQTFEELYNNAVLTLNTAKKEGENVIKFYESQLNKKLEE 684

Query: 706 MIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            ++ +  +  A +       + P  +  D  I G E+LI+            +F+   E 
Sbjct: 685 YLEAEKIVEKAFDKKLFKFYFQPYFKSEDFSIAGFESLIRIVDENGTVYPPIKFIDYLEN 744

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK------------DLLDNELC 811
              I     + LE +++ I  +    +   I I +NI+ K            ++ D    
Sbjct: 745 SKYITKFEEWALEEVSQKIKKFNSLNDKKDITISLNISPKGLLGYSLNLTSDEISDKSFI 804

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG--ISLTLDDFGTKCSL 869
           E +++L  +T    + + +  +E  V+ + E+S+ +   ++ +   I +++DDFGT  S 
Sbjct: 805 ERLKSLSIETQ---NNLVIEITERNVIKDIEKSKKIFKDIKDLNPNIKISIDDFGTGYSS 861

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +  D +K + S +      R   ++++ II +AK+     IA+ +  E  +K L
Sbjct: 862 LTYLRDLAIDILKIDMSFVRNIARSRQDLSLVKFIIGLAKDFGLKTIAEGVETEEQVKLL 921

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +G DY+Q  + + P+     +KL+ E
Sbjct: 922 SLLGADYLQGFYFSKPMPEEEAIKLIME 949


>gi|116253876|ref|YP_769714.1| transmembrane sensory box GGDEF/EAL protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258524|emb|CAK09628.1| putative transmembrane sensory box GGDEF/EAL protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 767

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/718 (19%), Positives = 271/718 (37%), Gaps = 37/718 (5%)

Query: 258 EIALSSSLIIFLFMYLHWNRWHAKVG----------YITFSGIACIAILFCMSFYYPMVT 307
            +  ++ L++F    +   R   +V                 +A  A    +        
Sbjct: 52  ILLSAAFLLVFCVRMV-IFRHFDRVDKESLSHAGIERWERILVAGAACTTALLGIASGYA 110

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
             +   + A +            + G      L             +  ++        +
Sbjct: 111 IFVVHDSFAELACIAVTMATMVSVVGRNYGSRLAVDLQTFSCCLPMIICSLLALDFYRGL 170

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
               +    L    +   V + +       + I    +R   A+      +   D     
Sbjct: 171 LSIFLIPFWLTTRAMANGVREFLYENVIARREITIIADRFDTALNNMPHGLVMVDAENRI 230

Query: 428 VTTTPDIATILGL-ASGSM----HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                    +L + A   +     G +  +       D      IL        G L   
Sbjct: 231 QVVNRKACELLKIGAPDRLKDRDLGAVLRYGARYSFMDASQPELILRQLTQVAEGNLSRT 290

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             +   +     +         ++G     + I  D++ + K+ + I+     D LTG+P
Sbjct: 291 L-IHFPEG--LSLEFSAS--RRADG---GAVLIFEDVSSRVKAEQKIMHMVRFDALTGLP 342

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR+ F   +   L             MV+DID++K +ND+ G   GD +L ++  RI + 
Sbjct: 343 NREYFGQLVQDYLAKHQRKSG-PLGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQA 401

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                IL RL G++F +          +      +  +I     + E    V+ S G+A 
Sbjct: 402 S-GNAILGRLMGDQFILFFPHAKEQASLDVEIRRVHAAIQGNYAVDELTFLVSLSAGYAI 460

Query: 663 WTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
             S+     E    A+LA++ +K R  GG       +     ++  +K DL  AV    L
Sbjct: 461 LESAAFAMDEWSVKADLALFESKSRFKGGISGFEREMDGRYIEQQKLKADLREAVSAQAL 520

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +L + P+ R     I   EAL +W HP+ G+I    F+ +AE++ +I  I  F+L +   
Sbjct: 521 HLAFQPMFRADGSRIECAEALARWVHPEKGSIPPDVFIRLAEDMGIISDITRFVLFKACS 580

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           + ++W +      I + +N++++DL D ++   +   ++ +    +R+ L  +ES ++  
Sbjct: 581 ECMNWPEH-----IAVSVNLSARDLRDADILSVVAEALAHSGLDAARLHLEVTESCLIDE 635

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
           P   R +L  LR  GI++ +DDFGT  S LSYL  +P D VK + S +    E      +
Sbjct: 636 PAAVRAILAELRARGITIAIDDFGTGFSSLSYLDTLPLDIVKIDRSFVRNIVEDNRRLKL 695

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG-CDYIQDSHVASPLGFNSILKLLKE 955
           LR  + +A+ +   I+ + +  E  +  L +    D +Q    + P+   +I  LL++
Sbjct: 696 LRGTVHLARELGLKIVIEGVETEEQLALLNKHRSADLVQGYVFSPPVPSQNIP-LLQQ 752


>gi|158336421|ref|YP_001517595.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158306662|gb|ABW28279.1| diguanylate cyclase/phosphodiesterase, putative [Acaryochloris
           marina MBIC11017]
          Length = 540

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 214/440 (48%), Gaps = 5/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++  + +  +A  D+LTG+ NR   +  L   +    TD  +      ID D++K+IN
Sbjct: 91  HLEQINKRLEYDATHDDLTGLANRNQLMRELNRCVAQLGTDLAVGLCFFFIDFDRFKQIN 150

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD VL+ +  R+  L      LARL G+ F  +L  +    +    A  +  +
Sbjct: 151 DRFGHLMGDKVLIQVANRLSTLAGDATCLARLGGDEFV-LLTGQLTVAEAYKLAQRITAA 209

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES-FRVSS 699
            A P+ + E EI+++AS+G     +S  ++ +++++A++AMY AK  G  +     R+ +
Sbjct: 210 FAQPLRIRETEISMSASVGIVLGDASYQSADDVVRDADIAMYRAKATGNCYQFFDERMRT 269

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              + + ++ +L  AV   +  + + PI+ +   +I  +E+L++W HP  G IS   F+ 
Sbjct: 270 EYLEGLELERELETAVREKQFRVNFEPIVDIHQSDIYSIESLVRWIHPDKGIISPGRFIS 329

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALI 818
           +AEEL ++  I+  + E+  +    WR      P     +N++   L  +++   + + I
Sbjct: 330 LAEELGLVIDIDRIVFEQTCKQFRQWRASGITRPQQKFNVNLSCGQLERSDIIPFLLSTI 389

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +  SP  + L  +ES ++ +       L  + ++G S+ +DDFGT  S LSYL   P 
Sbjct: 390 DVSGISPHDVVLEITESYLLADSVLVMKNLNEMNELGFSIFVDDFGTGYSSLSYLAKYPI 449

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +     + +   ++RS+I MA  +   ++ + +     ++ +T +GC YIQ
Sbjct: 450 HGIKIDRSFVRDLTESPESKELIRSMIAMADALNLQVVTEGVETLEQLQIMTELGCRYIQ 509

Query: 937 DSHVASPLGFNSILKLLKER 956
                 P+        L ++
Sbjct: 510 GFLFTRPMDAMQAETFLVDQ 529


>gi|156972851|ref|YP_001443758.1| hypothetical protein VIBHAR_00528 [Vibrio harveyi ATCC BAA-1116]
 gi|156524445|gb|ABU69531.1| hypothetical protein VIBHAR_00528 [Vibrio harveyi ATCC BAA-1116]
          Length = 1049

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/591 (18%), Positives = 223/591 (37%), Gaps = 23/591 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 465  LFEARDITSRKAMEDKLYHRESSLRNYYEQQPVMMVTLDSNNRVQEVNHFAQQLLGYQPL 524

Query: 444  SMHGPIRNWL----PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             M G            ++       R +L        G  + E   R AD    W+   I
Sbjct: 525  DMLGHYLYSFYCDEKALYP------RQVLLQPQQVMNGVWRREIEYRHADGHSVWVRENI 578

Query: 500  RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            RP+ +S+    + + +  DITE KK  + +   A  D LT   NR  F   L T L    
Sbjct: 579  RPLRDSD----QLLIVGEDITETKKLAKQLEYQARYDLLTDTYNRNYFELELQTALREVE 634

Query: 560  TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +   +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F +
Sbjct: 635  SHRRVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNAVLARMGGDEFAV 693

Query: 620  ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +L   +    I      +           + ++ ++ S+G      +  T   +   A+ 
Sbjct: 694  LLKDCDEHGAINIAKQIISTLGEQIFRWEDTQLFMSCSVGVRIIDHTAETPQMVHAQADS 753

Query: 680  AMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMD-EE 734
            A + AK +G N    F + +       ++      +  A+ +  L L    I+ L     
Sbjct: 754  ACHAAKEQGRNRYNLFSLDNEELRHRQLEMQSVNLVHEALSSKRLELFAQRILNLSGEGS 813

Query: 735  IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             +  E L++  + +   +S   F+  AE   +   I+  ++ +      +  +       
Sbjct: 814  PLCFEILVRIRNAQGNYLSPGVFVPAAERYNIAHWIDKQVISQTLEWFEARPEVVEQLG- 872

Query: 795  FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
               IN++ + + + E  + + A +  +     +I L  +E+  M N +++     R++ +
Sbjct: 873  RCAINLSGQSMGNQEFIDFLLARLQSSSIPCEKICLEITETAAMSNIDQALDFFTRVKAL 932

Query: 855  GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
            G  + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +   
Sbjct: 933  GCLIALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDINVNEMDRVMVRSINDLAKQMGKV 992

Query: 913  IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             +A+ +  +     L  +G DY Q   +  P     ++  L++  P  + +
Sbjct: 993  TVAEFVENDQVRACLVDLGVDYGQGYGIGHPKPLAELVNELQQLEPKSRKS 1043


>gi|77461739|ref|YP_351246.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385742|gb|ABA77255.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 556

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 218/448 (48%), Gaps = 12/448 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+      +   A QD LTGI NRQ F   LT  L     +D     +  +D+D ++ 
Sbjct: 110 VRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLA---ENDGRGLALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L+  D LARL  + F +++ +     +    A  + 
Sbjct: 167 ANDALGHQAGDRLILQVVARLKSQLEIGDQLARLGSDEFALLIDTRRAPQRAEWMAERIT 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           +++A P  +    + + +S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWVDGESLLIGSSLGIAHARAQG-GADPLMWHAHIAMQQAKSTQGCTFHIFNER 285

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++        ++ +L  A+   EL L Y P + L D +IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSMADLESELRRALRRDELELHYQPRLNLQDGQIVGLEALVRWRHSERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R++   P + + IN++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALRERGL-PALHMAINLSFRQFQDSQLLPTLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   +  +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G    E+   ++ ++I +A N+   ++A+ +     +  L   GCD 
Sbjct: 465 PITLLKIDKSFVGGMEQREENRKLVHAMINLAHNLHLEVVAEGVETREQLDLLRGFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLL---KERFPL 959
           +Q   ++ PL    +++ L     + PL
Sbjct: 525 VQGYLISKPLPLAELVEYLVVDASQPPL 552


>gi|94311185|ref|YP_584395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cupriavidus metallidurans CH34]
 gi|93355037|gb|ABF09126.1| c-di-GMP phosphodiesterase A [Cupriavidus metallidurans CH34]
          Length = 873

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 216/464 (46%), Gaps = 19/464 (4%)

Query: 505 SNGDILRYIGIANDI----TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +G     +G+A D+      + ++ E I   A+ D LTG+PNRQ  L R    +  +  
Sbjct: 402 PDGFHENLVGVAADLCALALVRDQTQERIHRLAYYDALTGLPNRQLLLSRADDAVARANA 461

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG---ELLKFPDILARLSGNRF 617
                  ++ I+++ +K++NDV G   GD  L+ +  R+            + RLSG+ F
Sbjct: 462 H-GTPLALLFINLNNFKRVNDVQGHGAGDRFLIEVASRLQFATAEHARDATVGRLSGDEF 520

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKN 676
            ++L    ++  +A  A  + +++  PI +      + +ASIG +  T        +L +
Sbjct: 521 AVLLPGHGHAEALA-IADELLRALDPPITVAHGLSPSPSASIGISMLTEQTRDRETLLHH 579

Query: 677 AELAMYHAKHRGGN------HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           A+LA+  A+ R G        V    ++    DR M++ +L  A+ + +L + Y P I L
Sbjct: 580 ADLAVCQARKRSGPDLGNQICVYDTVLARRLGDRRMLECELREAIGSGQLQMRYQPQIHL 639

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               +  +EAL +W HP  G+I+ + F+ +AEE  +I A+  + +         WR +  
Sbjct: 640 ASGNLWAVEALARWPHPHRGDIAPTVFVPLAEESGLIVALGYWAVREACAQQARWRRRGA 699

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P  I +N++   + D  L + +   +         + +  +ESV + +   +   +  
Sbjct: 700 AVPA-ISVNLSPLSIRDPALPDVVAQALRTHALPAGELTIEITESVFLDHTSEAEATIAA 758

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LRK+G+ L++DDFGT  S LS L  +P D +K + S +     +E    ++ ++I + + 
Sbjct: 759 LRKLGVRLSIDDFGTGFSSLSRLMQLPVDEIKLDRSFLVDLETSEATRTLVEAVIRIGRA 818

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            + T++A+ +   +  + L   GC   Q    A PL   SI + 
Sbjct: 819 RDLTVVAEGVTSALQRQFLLDQGCHVGQGFLFAQPLPAASIERW 862



 Score = 47.6 bits (112), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI--NDR 461
               SL +  + + V   D              +LG A     G  R W   +       
Sbjct: 144 LRMLSLCLDHAENPVMITDAHGTICHLNGGFTRLLGYARHQAVG--RRWQDLLMPINARP 201

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDI 519
           +   ++L          L+ E  V     Q  W+ + + P+  S  +G ++  + +  DI
Sbjct: 202 EQIPSLLAPLAAGL--PLRNEALVPDKSGQPRWLSVAVSPIMASTQSGGLVNTVWVLTDI 259

Query: 520 TEQK 523
           T  K
Sbjct: 260 TATK 263


>gi|150377268|ref|YP_001313863.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150031815|gb|ABR63930.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 729

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 209/436 (47%), Gaps = 15/436 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++S   +   A  D LTG+ NR SF   L   +  SA D      ++ +D+D++K++ND 
Sbjct: 294 QESQAELNHLARHDPLTGLANRASFNQSLAQAVASSAADQAN--ALLYLDLDRFKQVNDT 351

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD ++V++ +R+ E      +++R+ G+ F  I++      ++     ++  +I 
Sbjct: 352 LGHPVGDRLMVAVAKRLMETASAG-VISRIGGDEF-TIVVERTRQEEVEKLCDSLIAAIR 409

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
            P  +  + I +  SIG A  T +     E+ + A++A+YHAK  G N    F       
Sbjct: 410 QPFEIDGQPILIGLSIGVAVATGNDADPVEITRKADIALYHAKSAGRNRYAVFGPHMDEL 469

Query: 702 -SDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +  +++DL  A    ++L + Y P+      EI  LEAL++W HP  G I+   F+ 
Sbjct: 470 IRTKRDLEQDLRAALHAGNQLEVFYQPVYSAQSREISSLEALVRWRHPSKGAIAPDVFVP 529

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  +  F+L+        +      P + I +N+++ +L        + +L+ 
Sbjct: 530 LAETAGLIDRLGAFVLKEACSTAREF------PSLDIAVNVSAIELGQRHYAAQVFSLLR 583

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P R++L  +E+ ++         +  LR  G+   LDDFGT  S    L  +  D
Sbjct: 584 QFSVEPWRLELEITETALLDEAGVCEKNITALRDFGVKFALDDFGTGFSSFGRLQRLEVD 643

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +         +A+++SI+ +A      I A+ +  E   + L  +GCD +Q 
Sbjct: 644 RIKIDRSFVHAFDRPGGGVAVVQSIVGVAHAKGLRITAEGVETEEQSEILRNLGCDELQG 703

Query: 938 SHVASPLGFNSILKLL 953
            H++ P+  +S+ +LL
Sbjct: 704 FHLSKPVPKSSLRQLL 719


>gi|217974994|ref|YP_002359745.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217500129|gb|ACK48322.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 859

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 120/578 (20%), Positives = 231/578 (39%), Gaps = 23/578 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER  + +    + V   D+    +   P   ++L     S +   
Sbjct: 293 ASRVNSLLARIYQQKERAKITLESIAEAVILTDVDAKVIYMNPRAESLL--DVASCYALD 350

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           ++    +   D+ N + +              + ++  A      M   I  + N + +I
Sbjct: 351 QSLASLLKAGDQLN-QAVFTCIRLGESSPQVEKIKLLTA--SPRIMERSISNLRNHDKEI 407

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DIT+++     +   A  D++TG+ NRQ+F ++L      + T       V 
Sbjct: 408 VGTVVVLRDITQEELLKRQLQKRANFDSITGLLNRQAFDEQLPQFAASAKT-----IAVC 462

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +L  + + +   L   ++LARL G+ FG+++ + +    
Sbjct: 463 YLDLEQFKLINDSCGHTAGDRMLAMVAKAMQACLGPQELLARLGGDEFGLVICNRSALSV 522

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     +N       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 523 AQLLKQMIAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYIDAQELLKDADIACIAAKAKGA 582

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI  L    +   +E L++ 
Sbjct: 583 NQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGSGPQRQRMEILLRI 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +         P   I IN++   
Sbjct: 643 QEPCGRILAPAQFIAAAERFKLMPDIDKEVIRKAFLWLSLHP--VLWPDHCISINLSGNS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             I    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 701 LGAEGMVEYIAQQQHIFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 761 SGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 820

Query: 923 DIKELTRMGCDYIQDSHVASPLGF----NSILKLLKER 956
            I  L  +G +Y Q   +  P             L +R
Sbjct: 821 IIDRLLSIGINYAQGYAIGRPQPLANYREQYEMRLAQR 858


>gi|294341122|emb|CAZ89523.1| putative Adenylyl and guanylyl cyclase/Phospholipase A2; with PAS,
           EAL and GGDEF domains [Thiomonas sp. 3As]
          Length = 840

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/593 (22%), Positives = 249/593 (41%), Gaps = 39/593 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT---TPDIA 435
           V    F +   +         +     R  +    S +  W+ D           +   +
Sbjct: 238 VATRIFGLTWDITELRQTQTRLQRSESRFRMLAELSSEWFWESDPNDVLTYITRSSRRAS 297

Query: 436 TILGLASGSMHGPIRNWLPYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +  +    + + L  ++       +    R +++     R   L   FR+   D 
Sbjct: 298 E----SPLATLNLVGHNLNSLYPGQEFSPEWAQLRFLMEEHEEVR--DLIVPFRL-GPDQ 350

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  I   PM +  G    Y G+  D+T+  ++ E +   A++D LTG+ NR  F   
Sbjct: 351 ALLWWRIDASPMIDHLGLFQGYRGVVRDVTKAHQAEEKLELAAYRDTLTGLANRTLFEKH 410

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +   +  + T       V+ ID+D++K IND LG AVGD VLV   +R+ +L +  +  A
Sbjct: 411 VEDAI--AVTPPGQSFAVLFIDLDRFKLINDALGHAVGDKVLVETAQRLVQLARPNNTAA 468

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R  G+ F I+    +++ +    A+ +++S+  P++  ER +  TASIG A +     T+
Sbjct: 469 RFGGDEFLILARDAHDAAQALRMAMLVQQSLGEPMHHAERTLQTTASIGVAVFPQHGRTT 528

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPII 728
           +E+L  A+ AM+ +K  G N VESF V+          ++E+L  A+ N    + + PI 
Sbjct: 529 AELLGRADAAMHESKMLGRNRVESFSVALQSRIERRSQLEEELRAAIANRRFEVHFQPIW 588

Query: 729 RLMDE-----------------EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
                                 EI G+EAL +W       +   EF+ I  +  ++ +  
Sbjct: 589 SRKQNVLLHDDSATLEILRSAYEIAGVEALARWTRGNGERVQPDEFITILADCGLLDSFG 648

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             M+          R +       +  N++ + L  N     +  + +       ++ L 
Sbjct: 649 PVMMSVALEGFARLRKEQGFTG-TMAYNVSPRQLHVNACVSCIFDMAASFDVPRDKLVLE 707

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+V + +      +  + R++G+ L+LDDFG   S L YL  +P   +K + ++ +G 
Sbjct: 708 LTENVEIEHNPDLLAVFEQFRQMGVQLSLDDFGVGYSNLGYLTRLPVSQIKIDRAIASGV 767

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           +  R   AI R+ + MAK +   ++A+ +    D+  + R GC  IQ    + 
Sbjct: 768 STDRFKAAIARATLTMAKTLNLEVVAEGVETVADLLWMERAGCPMIQGWVFSR 820



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 4/126 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIA-TILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L     G  VW+ D+   ++    +           +    I  W+ ++   D     
Sbjct: 137 LDLLRTSPGLTVWELDLQTGQLHAEQNWLDEAHRHEPKTF--TIPEWMGHVAPADLPALE 194

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKK 524
             +             E R    D      +          +G   R  G+  DITE ++
Sbjct: 195 QAIARISAPDGFVQTVETRFIRVDGSTVTTMNHGMVRERGPDGVATRIFGLTWDITELRQ 254

Query: 525 SLEGIL 530
           +   + 
Sbjct: 255 TQTRLQ 260


>gi|258623230|ref|ZP_05718239.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584528|gb|EEW09268.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 595

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 213/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K ++    ++  D LT + NR++F  +L  I      +   +  ++ +D+D +K+IND L
Sbjct: 158 KQIKRYRRDSLTDFLTSLGNRKAFQIQLHQI---QKQNQASQYALIQVDLDDFKQINDSL 214

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF-AIAMRKSIA 642
           G   GD +L +L RR+  L      + RLS + F ++L  E+   +  +     +  ++ 
Sbjct: 215 GHQQGDKLLEALGRRLKTLQNQERKIYRLSSDEFALVLHYEDKLHQAIELTIEQLSNTLN 274

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
               L +R  +VT SIG A    +        +NA++A+  AK  G N V  F       
Sbjct: 275 QEFRLGKRTYSVTISIGVALLEDALNDVDIWCRNADIAIIKAKSCGKNCVRWFDDELLGE 334

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ +L +A+E+S+L + Y P + L   +IVG+EAL++W HP+ G I+  +F+ I
Sbjct: 335 TIRQFQIERELNIALEHSQLLMHYQPKVDLRTGQIVGVEALVRWQHPELGMINPGDFIEI 394

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  I  +++    R +  W +      + + +N+++   L +++   + + +  
Sbjct: 395 AEKTQQIIPIGRWVIYEACRQLNEWHNTYPF--LSMSVNVSNIQFLYDDIYSVIYSALET 452

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +E+ +M  P        RLR++GI + LDDFG   S L+YL  +P D 
Sbjct: 453 YPLPPHVLQLEITETTLMRYPNSVIQTCQRLRELGIQIALDDFGVAYSSLNYLKQLPIDV 512

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     ++    I+R+II +  N+   + A+ +  E  +  L   GCD  Q  
Sbjct: 513 IKIDRSFVDSCVDSQVGKMIIRTIIQLGHNLGKVVTAEGVDSEEKLAILKAEGCDKYQGF 572

Query: 939 HVASPLGFNSILKLL 953
             + P+  N I  LL
Sbjct: 573 LFSRPVPPNEIEALL 587


>gi|162146128|ref|YP_001600587.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161784703|emb|CAP54242.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 570

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 118/550 (21%), Positives = 230/550 (41%), Gaps = 43/550 (7%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSF-------VGYRRGRLQYEFRVRAADNQ-----F 492
           +   +   L  +  +     +  L          +   R   +  +R+     +      
Sbjct: 17  LRVNLEQGLEILSGDSLPRAKIALLEHMTLTDADIAALRANPEEAYRIVWRPGEDETHDI 76

Query: 493 HWMIIRIRPMSNSNGDILRYIGI-------ANDITEQKKSLEGILCNA------------ 533
                R   + +  G ++    +         D  E+  S     C A            
Sbjct: 77  ALSDCRASALFDGRGQLIGIFALYSRHRHGIADWGEKIVSHCRSSCVAIIEYGRTRRRLD 136

Query: 534 ---FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D LTG+PNR +  D L  +   +         ++++D+D ++  ND +G   GD 
Sbjct: 137 QIDRHDALTGLPNRAAIFDLLQKM---TTETPTSPFALIILDVDLFQDFNDAMGYEQGDR 193

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R     +   ++ RL G+ F I++  E ++    D A  +  ++  PI +  +
Sbjct: 194 LLQIVACRFSTHCRGDAVIGRLGGDNFAIVIPGEQDT-AANDLARDLVATLRSPIRIRGQ 252

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIK 708
           +I ++ S G  ++  +     +++ +A++A+  AK   RG               RV++ 
Sbjct: 253 DIVISCSTGIGTFPENGTEVEQVVHHAQIALREAKKATRGSVQNAPAATGDDVEARVLLG 312

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  AV+ SE  L Y P I +    I G+EAL +W HP  G I  S+F+ +AE+   I+
Sbjct: 313 SAMRKAVQKSEFRLFYQPQICMESGTIYGVEALARWYHPAMGLIQPSQFIPVAEQTGQIE 372

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I+ + +E   R +  W       P  + +N+++  + + +L   + AL+ +    P R+
Sbjct: 373 IIDRWSMEEACRQMAEWDRAGMRLP-TVSVNVSAVSIRNTDLPRRIAALLKRYRLEPRRL 431

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES +M     +   L  +  IGI L LDDFGT  S LS L ++P   +K + S +
Sbjct: 432 TVEITESAMMQQSRDTGATLSAMLAIGIGLALDDFGTGFSSLSRLTHLPLTEIKIDRSFV 491

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T        + +  + I + K +   ++ + +     +++L ++GCD +Q   ++ PL  
Sbjct: 492 TSLERDVGSMIVTEAAITIGKRLGVKVVTEGVEEIAQVRKLRQLGCDVVQGYLISKPLPS 551

Query: 947 NSILKLLKER 956
             I   L+ R
Sbjct: 552 AEIPNWLQSR 561


>gi|262164395|ref|ZP_06032133.1| EAL domain protein [Vibrio mimicus VM223]
 gi|262026775|gb|EEY45442.1| EAL domain protein [Vibrio mimicus VM223]
          Length = 644

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 212/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K ++    ++  D LT + NR++F  +L  I      +   +  ++ +D+D +K+IND L
Sbjct: 207 KQIKRYRRDSLTDFLTSLGNRKAFQIQLHQI---QKQNQASQYALIQVDLDDFKQINDSL 263

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF-AIAMRKSIA 642
           G   GD +L +L RR+  L      + RLS + F ++L  E+   +  +     +  ++ 
Sbjct: 264 GHQQGDKLLEALGRRLKTLQNQERQIYRLSSDEFALVLHYEDKLHQAIELTIEQLSNALN 323

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
               L +R  +VT SIG A    +        +NA++A+  AK  G N V  F       
Sbjct: 324 QEFRLGKRTYSVTISIGVALLEDALNDVDIWCRNADIAILKAKGCGKNCVRWFDDELLGE 383

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ +L +A+E+++L + Y P + L   +IVG+EAL++W HP+ G I+  +F+ I
Sbjct: 384 TIRQFQIERELNIALEHNQLLMHYQPKVDLRTGQIVGVEALVRWQHPELGMINPGDFIEI 443

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  I  +++    R +  W +      + + +N+++   L +++   +   +  
Sbjct: 444 AEKTQQIIPIGRWVIYEACRQLNEWHNAYPF--LSMSVNVSNIQFLYDDIYSVIYGALET 501

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +E+ +M  P        RLR++GI + LDDFG   S L+YL  +P D 
Sbjct: 502 YPLPPHVLQLEITETTLMRYPHSVIQTCQRLRELGIQIALDDFGVAYSSLNYLKQLPIDV 561

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +  S  ++    I+R+II +  N+   + A+ +  E  +  L   GCD  Q  
Sbjct: 562 IKIDRSFVDSSVDSQVGKMIIRTIIQLGHNLGKMVTAEGVDSEEKLAILKEEGCDKYQGF 621

Query: 939 HVASPLGFNSILKLL 953
             + P+    +  LL
Sbjct: 622 LFSRPVPPTEMEALL 636


>gi|295106196|emb|CBL03739.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 1152

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 239/567 (42%), Gaps = 32/567 (5%)

Query: 413 GSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTIL 468
            S D +++ ++       +   P    +  L+ G +     +     I   DR+ F    
Sbjct: 108 SSYDELFEINLTDGTYRVLYHEPGKYVMPPLS-GELDAMFDDVRENMISPEDRERFERFW 166

Query: 469 D-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           D     + +    G L+ EFR    D  + W+   + P+    G     +    DI  + 
Sbjct: 167 DFGTMLARIEEAGGALRDEFRKLRYDGSWGWVAQTVVPVKRGEGGETVVMCFIADIDAEV 226

Query: 524 KSLEGI------LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++               +D LTG+ N  +F ++   ++         R     +DI+ +K
Sbjct: 227 RNRNKHVETAQIRQLRERDRLTGLYNASTFYEKADKLV---KAHPGQRFDASYLDIEHFK 283

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIA 636
             N+  G   GD++L S+  R+  L +    +A  L G+ F ++L     +        +
Sbjct: 284 LFNEWHGREAGDEILRSIAARLDSLAERHGGVAGYLGGDDFTLVLPCGVIAED------S 337

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVES 694
           +   + +P    E  I    +IG      +  + S     A LAM   K+          
Sbjct: 338 IDGQLKLPPFDSEDTIGFRPAIGVCPIEEAGGSVSTACDYAMLAMASVKNAYAKRVAWYE 397

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +S    +   +  ++  A++N E    + P        IVGLEAL++W HP+ G +  
Sbjct: 398 DSMSEKLENEAKLLLEVKQALKNREFVPYWQPQCSTRTGRIVGLEALVRWQHPERGIVMP 457

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ + E    I +++L++ + + R++ SW D+ N  PI + +NI+  DL   ++ E +
Sbjct: 458 GAFIPVLERNGFIASLDLYVWDEVCRNLRSWIDRGNR-PIPVSVNISRADLYAIDVVETL 516

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L+S        ++L  +ES    + +     + +L+ +G ++ +DDFG+  S L+ L 
Sbjct: 517 EDLVSTYGLDHRLLELEITESAYAEDRK-MAEAVRQLKALGFTILMDDFGSGYSSLNMLK 575

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            I  D +K +   +     T++  +IL +++ MA+ ++  IIA+    +  +  L  +GC
Sbjct: 576 DITVDVLKIDMGFLNREDDTQRSESILEAVVSMARLMDLRIIAEGAETKEQVDFLQEIGC 635

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPL 959
           DY Q  +   P+    I  LL +   +
Sbjct: 636 DYAQGYYFHRPMDTEQIEALLGQPNAV 662



 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 86/254 (33%), Gaps = 14/254 (5%)

Query: 460  DRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            D    R+ LD     +           E+R +    +  WM +  R +    G  +    
Sbjct: 886  DEAAVRSFLDFDAMLARFEDGVLFDSLEYRQQDEQGE-RWMELDFRLVRLEEGGDVYAYL 944

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               DI  +K+    +   A  D LTG+ NRQ+    L   L  +          ++ID+D
Sbjct: 945  TVTDIDRRKRRELELEDKARHDALTGLLNRQTGAALLPEALAKTLR-KGTAGAFVIIDLD 1003

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K IND  G   GD  L      +    +  D++ R  G+ F +           A  A
Sbjct: 1004 DFKLINDRYGHLSGDTALADAGSHLRGAFRKNDLVCRWGGDEFIVYCDDITQ----ASLA 1059

Query: 635  IAMRKSIAMPINL---LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              +      P       +  I ++AS G             +   A+ A+Y AK +G  H
Sbjct: 1060 RRVGALCGKPWTTKVRGDTSIELSASAGVVLVPKQGTDFKTVYDRADTALYRAKSQGKAH 1119

Query: 692  VESFRVSSFRSDRV 705
               +   +      
Sbjct: 1120 FCFYDPGTPSPPCR 1133



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        + G  +  +H   R     +H +DRD   ++      +     +   R   
Sbjct: 711 LQVNNSYYRVTGCNAIDLHERQRFIFRQVHPDDRDLIMSLFQQAEQHPVSGAEGTIRRYR 770

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + +  W+ +++  +       + +     D+T+Q++  
Sbjct: 771 LNGELMWLHLKVFFLRREQERSIFF-ASLADVTDQRELD 808


>gi|121998484|ref|YP_001003271.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Halorhodospira halophila SL1]
 gi|121589889|gb|ABM62469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 686

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/579 (19%), Positives = 229/579 (39%), Gaps = 52/579 (8%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              +++ V       + +     +    +  + + +   D     +       T LG   
Sbjct: 150 SLHILEDVTEREEVRKALRERDWQYHQLLAKTAEGIVIVDGDGRILYANAAAGTFLGQEP 209

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G    W       +      +                           + +  +P+
Sbjct: 210 QELVG---AWFGQAIPREVPQQVELFA------------------PGIGVRTVEMGAQPI 248

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                 +  ++   +D+T ++                    R  F DRL   LD      
Sbjct: 249 DWEG--LNAWVINLHDVTNRESL------------------RLLFQDRLARTLDALP--P 286

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-----LARLSGNRF 617
                ++VID++ ++ IND  G   GD VL  L +R+  +    ++     ++RL G+ F
Sbjct: 287 WAPVALVVIDVNDFRTINDSFGHVAGDAVLKQLGQRLSHVRVPAELSAAAQVSRLGGDEF 346

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L    +    A+ A    +    P  +   E+ +   +G +S+     +++++++ A
Sbjct: 347 AVVLPRLRSLGDAAEVARRFLEVTEAPFRVQGHEVRIHLRVGVSSYPEPAGSAAQLVQQA 406

Query: 678 ELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           + AMY A+  G      S  +++   +R+ +   L  A++   L L +     L     +
Sbjct: 407 DTAMYQARQEGVSLRFFSEELTADARERLELGSQLRQAIDEDALELHFQLQTELASGRWI 466

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP+ G +S ++F+ +AE + +I  +  ++L R       WRD        +
Sbjct: 467 GAEALLRWAHPERGWVSPAQFVPVAERVGLIGELGRWVLRRACEQARIWRDAGLAFG-RV 525

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++  L+   L + +   +++    P  + L  +ESV+M         L  LR  G+
Sbjct: 526 GVNVSAPQLIAGGLVQDVDYALAQAGVPPEVLALEITESVLMEQDRHVVAQLEALRARGV 585

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914
            + LDDFGT  S LSYL  +P D +K + S + G    +    I R+II +  ++  +++
Sbjct: 586 QIALDDFGTGYSSLSYLRGLPVDQLKIDRSFVQGLPSDQTQIKINRAIIDLGLSLGYSVL 645

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ I      + L R GC   Q  + A P     +   L
Sbjct: 646 AEGIETREQQEVLLREGCPLGQGFYFARPEPAAQVTPRL 684


>gi|326797147|ref|YP_004314967.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547911|gb|ADZ93131.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 790

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 212/443 (47%), Gaps = 14/443 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + ++  A  D LTG  NR+ F   L   L  +   +  +  +++ID+D +K++ND  
Sbjct: 343 QAEKKMIQQAQTDLLTGAGNRERFNKALFEQLREAKVYNQ-KFALLLIDLDLFKEVNDTR 401

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIA 642
           G  VGD++L    +R+  L     ++ RL G+ F  +L   N N   + DF   ++  + 
Sbjct: 402 GHQVGDEILRITAKRLMALCPKQQLICRLGGDEFIFLLSGTNVNKEYVHDFCQNIQTQVR 461

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
            P    + EI V+ SIG A +    +   E++  A+ A+Y AK  G N V+ F V     
Sbjct: 462 QPFEFSQGEIHVSCSIGVAMYPEDGVDEREVMAAADQALYSAKRAGRNEVKDFDVELKYA 521

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +++ + +DL  A+ N E +LV+ PI+     EI+  EALI+W HP  G I   +F+  
Sbjct: 522 LLEKIELVKDLRDAIANKEFHLVFQPIVN-NVGEIMKFEALIRWQHPTRGLIPPDQFIGY 580

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-----LCEGMQ 815
           AEE   I  I  +++      +   +       I + +N++   L +++     L   + 
Sbjct: 581 AEESGQIVDIGEWVILEAKMALDKLQSVYG-EHIQVSVNVSPIQLSNSQSDRTKLLYDLL 639

Query: 816 ALISKTLYSPSR-IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +     S    + +  +E++ M   + ++  L   RK G+ + LDDFGT  S LSY+ 
Sbjct: 640 TGVYSEGTSGKNGLVVEITENLFMNAEDGTQQHLLNFRKHGVQVALDDFGTGYSSLSYIM 699

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +K + S ++   E+    A+   +I MA ++   ++A+ +  +     L++ GC
Sbjct: 700 NYNIDYLKIDKSFVSKLDEQSPSGALCEGMISMAHSLGILVVAEGVETQEQAALLSKYGC 759

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           DY+Q  + + P     I+  L+ 
Sbjct: 760 DYLQGYYFSKPQRLEDIIATLRS 782


>gi|296136946|ref|YP_003644188.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thiomonas intermedia K12]
 gi|295797068|gb|ADG31858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thiomonas intermedia K12]
          Length = 840

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/593 (22%), Positives = 249/593 (41%), Gaps = 39/593 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT---TPDIA 435
           V    F +   +         +     R  +    S +  W+ D           +   +
Sbjct: 238 VATRIFGLTWDITELRQTQTRLQRSESRFRMLAELSSEWFWESDPNDVLTYITRSSRRAS 297

Query: 436 TILGLASGSMHGPIRNWLPYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +  +    + + L  ++       +    R +++     R   L   FR+   D 
Sbjct: 298 E----SPLATLNLVGHNLNSLYPGQEFSPEWAQLRFLMEEHEEVR--DLIVPFRL-GPDQ 350

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              W  I   PM +  G    Y G+  D+T+  ++ E +   A++D LTG+ NR  F   
Sbjct: 351 ALLWWRIDASPMIDHLGLFQGYRGVVRDVTKAHQAEEKLELAAYRDTLTGLANRTLFEKH 410

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +   +  + T       V+ ID+D++K IND LG AVGD VLV   +R+ +L +  +  A
Sbjct: 411 VEDAI--AVTPPGQSFAVLFIDLDRFKLINDALGHAVGDKVLVETAQRLVQLARPNNTAA 468

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R  G+ F I+    +++ +    A+ +++S+  P++  ER +  TASIG A +     T+
Sbjct: 469 RFGGDEFLILARDAHDAAQALRMAMLVQQSLGEPMHHAERTLQTTASIGVAVFPQHGRTT 528

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPII 728
           +E+L  A+ AM+ +K  G N VESF V+          ++E+L  A+ N    + + PI 
Sbjct: 529 AELLGRADAAMHESKMLGRNRVESFSVALQSRIERRSQLEEELRAAIANRRFEVHFQPIW 588

Query: 729 RLMDE-----------------EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
                                 EI G+EAL +W       +   EF+ I  +  ++ +  
Sbjct: 589 SRKQNVLLHDDSATLEILRSAYEIAGVEALARWTRGNGERVQPDEFITILADCGLLDSFG 648

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             M+          R +       +  N++ + L  N     +  + +       ++ L 
Sbjct: 649 PVMMSVALEGFARLRKEQGFTG-TMAYNVSPRQLHVNACVSCIFDMAASFDVPRDKLVLE 707

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+V + +      +  + R++G+ L+LDDFG   S L YL  +P   +K + ++ +G 
Sbjct: 708 LTENVEIEHNPDLLSVFEQFRQMGVQLSLDDFGVGYSNLGYLTRLPVSQIKIDRAIASGV 767

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           +  R   AI R+ + MAK +   ++A+ +    D+  + R GC  IQ    + 
Sbjct: 768 STDRFKAAIARATLTMAKTLNLEVVAEGVETVADLLWMERAGCPMIQGWVFSR 820



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 4/126 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIA-TILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L     G  VW+ D+   ++    +           +    I  W+ ++   D     
Sbjct: 137 LDLLRTSPGLTVWELDLQTGQLHAEQNWLDEAHRHEPKTF--TIPEWMGHVAPADLPALE 194

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKK 524
             +             E R    D      +          +G   R  G+  DITE ++
Sbjct: 195 QAIARISAPDGFVQTVETRFIRVDGSTVTTMNHGMVRERGPDGVATRIFGLTWDITELRQ 254

Query: 525 SLEGIL 530
           +   + 
Sbjct: 255 TQTRLQ 260


>gi|54298266|ref|YP_124635.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris]
 gi|53752051|emb|CAH13477.1| hypothetical protein lpp2324 [Legionella pneumophila str. Paris]
          Length = 506

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 207/440 (47%), Gaps = 5/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++  + +   A  D L+ +PNR  F   L   +  S         ++ ID+D +K +N
Sbjct: 63  DLERVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGR-HLALLSIDLDFFKNVN 121

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L  + +R+   L+  D +ARL G+ F +IL   NN  +    A  M + 
Sbjct: 122 DRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQK 181

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P ++    + +  SIG A +  +   +  + KNA++A+Y+AK  G N+ + F  S  
Sbjct: 182 MGKPFHIKGHTVMIGISIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSLR 241

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +     +    +L LA+E  E +LVY P + L    +VG+E L++W HPK G +   EF+
Sbjct: 242 KQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNTMVGMEVLLRWQHPKRGVVFPDEFI 301

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  ++L    R  + W+ +       + INI+            ++ ++
Sbjct: 302 AVAEHFNLIIPIGEWVLRTACRQYVDWKKRYAPFNCTLAINISLHQFQHKGFISSVKHIL 361

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L  +E+  +    +    L  LR +GI L  D+FG+  S LS+L   P 
Sbjct: 362 QEYQMPSDWLELEITEATAVNFLGKIEETLSALRNMGIKLAFDNFGSGYSFLSHLKNSPI 421

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            ++K   +L+  +   E    I++S I +++ +   ++   +  E  +  L    C  +Q
Sbjct: 422 QSIKLKQALIEDAHLRENDNLIIKSTIALSQELGLNVVVGGVETEEQLNFLRSSHCLEVQ 481

Query: 937 DSHVASPLGFNSILKLLKER 956
             + + PL    + + +KER
Sbjct: 482 GYYSSKPLTVGQMTQFIKER 501


>gi|261211819|ref|ZP_05926106.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839169|gb|EEX65801.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 625

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 202/442 (45%), Gaps = 7/442 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  + + +  +   D LT +PNR +  +RL   L   A D     T++   +  
Sbjct: 186 LKEIEQRTVAEDFVEFHRHFDPLTKLPNRVTLTERLQPQLVNIADDQQ--ITLIYFSLRN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  VGD +L +L +R+   L    +LAR+ G+ F +    + +  +      
Sbjct: 244 FKSVNDSYGYQVGDQILSALCQRLSHNLPENWLLARIVGSEFVLTARHKRSQNETKKVIN 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + ++  MP N     IT+   +G          S   ++ A  AM  AK  G      +
Sbjct: 304 RVVQACTMPFNTNNLNITLQCHLGVTLAPMDATDSLSFIQRASSAMSWAKKEGIQVSFFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                   +R+ ++  L  A+   EL + + PI+    + +++G EAL++W +P+ GNI+
Sbjct: 364 LAAQKATEERLQLESHLLHALRLGELAVHFQPIVDLKQNGKVIGAEALLRWHNPQLGNIA 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  R    W       P  I INI+     +    E 
Sbjct: 424 PDRFIPLAESNGQIIEIGYFVLHQALRKAAEWCKLT-TSPFKIAINISPIQFREQRFVEY 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +++     P  I+L  +E +++ +   ++  L +LR+ GIS++LDDFGT  S LSYL
Sbjct: 483 LKDMMTLYQLPPGTIELELTEGILLQDEHYAQSALAQLRQQGISISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      E+   + R+II MA  +   +IA+ +  +     +   G
Sbjct: 543 QKYSFDTLKIDRSFINQLEYNEQNRELTRAIIAMAHKLNMAVIAEGVEKDYQADFVRTEG 602

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C + Q       +  +   +LL
Sbjct: 603 CTFAQGYLYGKAIPADDFTQLL 624


>gi|16125110|ref|NP_419674.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233837|ref|YP_002516273.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
 gi|13422114|gb|AAK22842.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|220963009|gb|ACL94365.1| CHASE4-family GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 735

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 223/436 (51%), Gaps = 15/436 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR  F +RL   +D  +        V+ ID+D++K +ND  G 
Sbjct: 299 EARAKHMAMHDALTGLPNRVLFEERLRQGVDGLSRRRGA-MAVLAIDLDRFKAVNDTHGH 357

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD+++  +  R+  L +  + LARL G+ FG++     +    A  A  +  ++A P+
Sbjct: 358 AAGDELIQVIGARLAGLCRASETLARLGGDEFGVVAAEI-DPQGAAALAERLVAALAAPV 416

Query: 646 NLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           +L    + V  S+G A  T  +    + E  + A++AMY AK  G      F      + 
Sbjct: 417 DLSCGTVFVGGSVGVAVITPDEAFVGAVEAARRADVAMYRAKDEGRGRYCFFEAEMDAAL 476

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    ++ DL LA+++  +++ Y P +     +++G+EAL +W HP+ G IS   F+ +A
Sbjct: 477 KARRGLEADLRLALKDGGVWVAYQPQVDAA-GKVLGVEALARWTHPEKGAISPGAFVPLA 535

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +   ++ R   D + W+       + + +N+++  +      + +  ++++T
Sbjct: 536 EDCGLIDELGRLIMRRAFTDSLRWK------DLKVAVNVSALQMRQAGFPDLVAQILAET 589

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                +I+L  +E  ++G+ E +   + RLR++G SL LDDFGT  S LSYL   P D +
Sbjct: 590 GARAEKIELEITEGALLGDDEATHDAISRLREMGFSLALDDFGTGYSSLSYLRRYPIDKI 649

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T  G  ++  A++ +I+ +AK ++ ++IA+ +      ++L  +GC   Q   
Sbjct: 650 KIDRSFITPLGGDKEAGAVVAAIVRLAKALKLSVIAEGVETNQQREQLHEIGCVQAQGFL 709

Query: 940 VASPLGFNSILKLLKE 955
            ++ L  ++I  ++ E
Sbjct: 710 FSAALAADAIDTIVDE 725


>gi|317483822|ref|ZP_07942762.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924925|gb|EFV46071.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 2361

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/587 (20%), Positives = 231/587 (39%), Gaps = 20/587 (3%)

Query: 373  GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
              L  I+ +      + V       +    D ER    V  +  +V++W++  D    +P
Sbjct: 1762 IYLAFIMDIGDKKQAEEVAQQNILLERQRLDDERYRTIVEQTDTLVFEWNLETDTRYISP 1821

Query: 433  DIATIL--GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +I            +    R  L  IH +D       L      R    +   R R  D+
Sbjct: 1822 EIVARFAGNYDHRDLMHVWREDL-VIHPDDLPLLTAFLKDSRIQR--YTEMTARFRKRDS 1878

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
             + W    +  + +  G+  RYIG  ND+    +S+  +   A  D LT + N  +F  +
Sbjct: 1879 VYIWCKAALTCLHDDKGNPKRYIGTLNDVDSATRSVLALKYRAEFDLLTDLYNMHTFYSQ 1938

Query: 551  LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
                +         R +++ +DID++K IND+ G+  GD +L+++   + E +     + 
Sbjct: 1939 AAQAV---HAYPERRYSIVRMDIDRFKVINDLYGLKEGDKLLIAIADLLREKMAGTHSVY 1995

Query: 611  -RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
             RL G+ F + +    +  +I      +   +A    L      V  S G     +    
Sbjct: 1996 GRLGGDVFCLCVDY--SRERILALIKELTDRLAD-YPL---PYKVVPSFGICEVDNIDTP 2049

Query: 670  SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPI 727
             + +   A LA+   K    N    +             I+  +  A+   +  L   P 
Sbjct: 2050 INVLCDWANLALKTIKGNYLNSYAFYDGKLRERILEEKKIENQMHDALLQGQFVLYLQPK 2109

Query: 728  IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            + +    I+G E L++W HP  G +    F+ + E+   I  ++ ++ E+    +  W D
Sbjct: 2110 VHIPTSRIIGSEGLVRWIHPTEGLMPPDRFIPLFEKNGFIIRLDEYIWEQACITLRRWID 2169

Query: 788  QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 P  I +N++   + D  L E +  L+ +    P  ++L  +ES  + N       
Sbjct: 2170 HGL-TPTPISVNMSRMHIHDPRLREKLLDLMRRYELPPHLLELELTESAFLENESGLFES 2228

Query: 848  LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905
            +  L+  G   ++DDFG+  S L+ L  +P D +K +   +    +TE+   ++R  I +
Sbjct: 2229 MKALQAFGFQFSMDDFGSGYSSLNMLKSMPVDFIKIDRGFLNEVVTTERGKTVIRFSISL 2288

Query: 906  AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            A+ +   +IA+ +  E     L + GC Y Q    + PL       L
Sbjct: 2289 AREMSIKVIAEGVETEEQAAFLLQAGCAYAQGYFYSRPLPIPQFEAL 2335



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 125/315 (39%), Gaps = 16/315 (5%)

Query: 390 VLATGYFSQGIFSDGE----RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS--- 442
                   + +    E    + +L    S D+ +++D   D +  T     + G      
Sbjct: 114 AFTDLACVEEMLRSAEYERRKYALIADISEDLPFEYDFETDTIAYTQKYHKVFGHEPVIP 173

Query: 443 --GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                 G     +  +    R+ F  +            ++   +     +  W  +   
Sbjct: 174 RFRERLGRGEA-IDPVSEGFREPFLALDAEKASTEAAPERF---LPTHSGRKRWFALYST 229

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + ++ G  ++ +G   DI  QK+    +L  +  D++TG+ N+ +  + +   L  +  
Sbjct: 230 NILDTLGKPVKSVGALRDIDRQKREQLRLLDKSRTDSMTGLYNKVTTEEEIRIALRDAR- 288

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  + +IDID +K +ND +G   GD +++ + R++    +  DI+ R+ G+ F + 
Sbjct: 289 -PGSSGVLFMIDIDNFKDVNDSMGHLAGDSIIMEIARQLRRTFRQDDIIGRVGGDEFHVY 347

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   +    I   A ++  SI         +  V+ S+G A  T   I   ++ + A++A
Sbjct: 348 MRDVSEIAGIRTRAQSLCSSIRNLFKNSNIDNAVSVSVGIAV-TERPIAYEDLFRQADVA 406

Query: 681 MYHAKHRGGNHVESF 695
           +YHAK  G N  E F
Sbjct: 407 LYHAKGNGKNRYEFF 421



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 16/146 (10%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            Q +       +       RQS     SGD + + ++   +        ++    S    G
Sbjct: 1363 QDINERKRMEETAARLERRQSTVFRQSGDCIIEINLRTWQFHRNASAPSL---PSEPRSG 1419

Query: 448  PIRNW----LPYIHINDRDNFR------TILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
              R +    +  +H  DR+          +L++   + R  +   +RV   +N+  W+  
Sbjct: 1420 DYRTFHAETIAMVHPADRERINRTTTPNALLEACRAHSRTLVDQ-YRVLFGENEQLWLEN 1478

Query: 498  RIRPMSNSNGDILRYIGIANDITEQK 523
            R        GD +    I  DITEQK
Sbjct: 1479 R--VFFLEEGDDMTAFFIIRDITEQK 1502



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 454  PYIHINDRDNFRTILD----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             YIH +DR++F  +      S       RL  E+RV A D  +HW+ I + PM  S+G +
Sbjct: 1299 RYIHPDDRESFLELFSPENVSRKVADDPRLSTEYRVLAVDGTYHWISILVLPMPGSSGRL 1358

Query: 510  LRYIGIANDITEQKKSLEGILCN 532
            L    +  DI E+K+  E     
Sbjct: 1359 L---LLWQDINERKRMEETAARL 1378



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 405  ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDR 461
            E+   A+    D +++ +I +D       +                  L     +   DR
Sbjct: 1648 EQYDHALRNIYDELYELNITQDSYRIVYHVKGKYVTPPEQGRLSECIDLVSRNMLFPEDR 1707

Query: 462  DNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              F        L       R  L  EFR    D ++HW  I + P++  +G    Y+   
Sbjct: 1708 TRFLEFFNLDALRQNFAAGREYLIGEFRKLWHDQEYHWASITMFPVAQPDGGDEIYLAFI 1767

Query: 517  NDITEQKKSLE 527
             DI ++K++ E
Sbjct: 1768 MDIGDKKQAEE 1778



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             ++A+  +   +++ D+  D           ++ +               IH  DR+ F 
Sbjct: 1515 YNIALRNTYTEIYEIDLSADTPHLVYAADTPMIPVDHDKNGNIHTIAATLIHPEDRERFL 1574

Query: 466  TIL-----DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIANDI 519
            T              R  +  E+R   +D +++W+   I P+   +     + I +  DI
Sbjct: 1575 TAFIGSNIRKEFSEGRMEVPAEYRRLGSDGKWYWVSAFIVPLCGHDSCRTDKGILLVRDI 1634

Query: 520  TEQKKSLEGILCNAFQDN 537
            +EQ++  +    +   D+
Sbjct: 1635 SEQREEEQRRRISEQYDH 1652



 Score = 47.6 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 10/142 (7%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIRNWLPYIH 457
              D E   +A+  S   ++  ++  +++        +   + ++       +      +H
Sbjct: 862  RRDEENLQVALQNSYAKIYRMNLAANQLTCLFCNTKLLAPIDVSGEFDKDIVTVMKTRVH 921

Query: 458  INDRDNFRTILDSFVGYR----RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              DR  FR    +    R       L  E+R    D  +HWM+  I P+    G+    +
Sbjct: 922  PRDRVVFRNFFTAETILRKLDAGEELSVEYRKLGLDGTYHWMLALIVPL--PTGNRGETV 979

Query: 514  GIANDITEQKKSLEGILCNAFQ 535
             +  D+TE KK  E     A Q
Sbjct: 980  LLVRDVTE-KKEEENNYLLALQ 1000



 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +     LA+  +   ++  D+    V       +   I+   +       R  +  +  
Sbjct: 990  EEENNYLLALQNNYSEIFSLDVRSRTVTPLFYNSEQVPIVKEEANFSAFVKRRAVDRVAP 1049

Query: 459  NDRDNFRTILDSFV---GYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIG 514
               ++     +  +     R GR + E+R R++ +  + W+    +P+  + G     + 
Sbjct: 1050 ESLESVLDFYERRLFEELERGGRPECEYRKRSSENGPYRWIAASAQPVPGNEG---HALI 1106

Query: 515  IANDITEQKKSLEGILCNAFQ 535
            +  D+T+ KK  E     A Q
Sbjct: 1107 LLRDVTK-KKEEENNYLLALQ 1126



 Score = 41.5 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 15/144 (10%)

Query: 402  SDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATI--LGLASGSMHGPIRNWLPYI 456
             +     LA+  +   ++  D+    +       +  TI    +        +      +
Sbjct: 1116 EEENNYLLALQSNYTEIFRLDLEAGLIAPLYYNSEQVTISPTLMPIEEFV--LDRGKNRV 1173

Query: 457  HINDRDNFRTILD----SFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMSNSNGDILR 511
            H  +  + RT  D              Q E+R R    + + W+   IR +  +      
Sbjct: 1174 HPENLKSVRTFYDVPNIMARLDLGEAPQLEYRKRQDAGKPYRWVNATIRAIPGAYH---H 1230

Query: 512  YIGIANDITEQKKSLEGILCNAFQ 535
             + + +DITE+             
Sbjct: 1231 ALLLLSDITERLNEEADFYKALQH 1254


>gi|332296034|ref|YP_004437957.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermodesulfobium narugense DSM 14796]
 gi|332179137|gb|AEE14826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Thermodesulfobium narugense DSM 14796]
          Length = 1142

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/619 (24%), Positives = 257/619 (41%), Gaps = 25/619 (4%)

Query: 343  AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
                 F     L ++  + +   ++     G L    I   F VIQ  +           
Sbjct: 538  VCSYGFNSCFALSISFKENIIGSLVLVFEKGMLFNDEIFNLFEVIQQQIEFILNK---LE 594

Query: 403  DGERQSLAVLGSGDI---VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIH- 457
            D +   + +         V   D   + V        I G +   + G   + +    H 
Sbjct: 595  DEKFSKITISALNSGFEFVIVTDSNFNIVYVNNKTLDISGYSREEIIGKHHSIFSSKTHT 654

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                  F  IL S             + R  ++      + I P    + +I  YI +  
Sbjct: 655  KEFSKKFYKILKS-----GNTYSGLIKYRIKNDILKDFYVNITPFFEGS-NITHYIAVGK 708

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +I      L+ +   A  D++TG+ N  SF   L   L+ +  +  +   V VI+   +K
Sbjct: 709  EIGNDDDLLKELYRLANYDDITGLFNLNSFKKELEKFLERAKAESQI-GAVAVINPINFK 767

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +IN+  G +VGD+VL  + +R+ + LK  D++ARL  +RFGI+L        I   A  +
Sbjct: 768  RINEAFGFSVGDNVLKQIAQRLKDNLKTYDVIARLESDRFGILLKDLRAEKDILIVASKI 827

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
               I  P  +L + + ++ +IG + +        ++L  A +A+  AK +G N V  FR 
Sbjct: 828  LSKIIKPYEILNQNVFLSFNIGLSLFPKDANIPEDLLNKALIALRDAKEKGENQVGFFRK 887

Query: 698  S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +  +M+K DL LA+ N +    Y P +   D +IVG EAL++W       I   
Sbjct: 888  ELEIEVTKALMLKSDLELAIANKKFVAFYQPYVD-KDRKIVGAEALMRWV-KNGKIILPM 945

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            +F+   E+   I      ++E +  D+ S++       I + IN++S+ L+   L + + 
Sbjct: 946  DFIEHLEKTSYIIDAENQLIENVLDDLQSFKRT-----IPVSINLSSQSLMQRNLRDDLI 1000

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            + +         +K+   E   + N E    L+  L+K GI  +LDDFGT  S L YL  
Sbjct: 1001 SKLEFHHLPMDLLKIEIVERTFINNFEHISDLIRELKKYGIYFSLDDFGTGFSSLYYLSM 1060

Query: 876  IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            +  +T+K + S + G    K   I+ SII +A ++    IA+ +      + L  M CDY
Sbjct: 1061 LDIETLKIDISFIRGIENSKTRNIINSIIFLAHSLNIKTIAEGVETIEQFEILKSMNCDY 1120

Query: 935  IQDSHVASPLGFNSILKLL 953
             Q      P+  +   K+L
Sbjct: 1121 FQGYFFHRPMPRDDFGKIL 1139



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG----ER---------QSLAVLGS 414
            P L  G V  ++LI  T+        Y  + +  D     E+          + A+  S
Sbjct: 246 IPILSKGEVKYILLINDTMPSFDRDHLYLLEELQLDLSFALEKIESQKNMLVLNQAISVS 305

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVG 473
            +     D     +     ++ I G +   + G   R +    H  D+  +  +    + 
Sbjct: 306 HEWAVITDRNGTIIDANKAVSDISGYSKEELIGKNPRIFKSGYH--DKAFYEKLWKKILS 363

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                    F  +A D    ++   + P+   +G++ R++ ++ ++T+  +    +   +
Sbjct: 364 GESCT--CRFVNKAKDGSIFYLDSILIPVM-HDGEVYRFVDLSINVTKLVEYENQLELRS 420


>gi|73540504|ref|YP_295024.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
 gi|72117917|gb|AAZ60180.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ralstonia eutropha JMP134]
          Length = 968

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/557 (18%), Positives = 212/557 (38%), Gaps = 12/557 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH 457
            +F++ ER  + +   GD V   D+     +  P    + G       G +   +     
Sbjct: 392 QLFAEKERAQVTLQAIGDAVVTTDVWGRIESLNPAAEALTGWREEEARGRLLQQVCALCD 451

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                  R ++   +  R   +     +     +   +   +  + + +   +  + + +
Sbjct: 452 EGSEAPLRNLVALALQQRWPGMTA--LLTGRGGRAVAVKPSVALIRDRSAQAIGVVVVLH 509

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  +++    +   A  D LTG+ NR  F  RL   +            +M +D+D++K
Sbjct: 510 DIRHEREHAARLAHEASHDALTGLVNRTEFERRLAAAIARVRVTSGTH-ALMYLDLDQFK 568

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD+++  +   +   L+  D LARL G+ FGI+L                
Sbjct: 569 VVNDTCGHAAGDELIRQMAAVMRAQLRKGDTLARLGGDEFGILLEHCPAPDAERIAESLR 628

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R          +R   V  SIG  +        +E +  A+ A Y AK  G N V+ +  
Sbjct: 629 RAVAGFRFTHRQRTFAVGVSIGLVALDGDTGGVAEAMSAADAACYVAKENGRNRVQVYHP 688

Query: 698 S----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI--VGLEALIQWDHPKWGN 751
                  R   +     +  A+      L    I+ L  +      +E L++    +   
Sbjct: 689 QDTVVQARHGEMEWVSRVHAALAAGRFCLYEQEIVPLNGQRQGGKHVELLLRMVDERNQL 748

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+   E   ++  I+ +++E     +   R ++        IN+++  L D    
Sbjct: 749 VPPMAFVPACERYNLMPMIDRWVVETAFVTLAQRRAESAEDIALCAINLSASSLADVRFP 808

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++    +T  + S I    +E+  + N  ++   + +++ +G    LDDFG   +   
Sbjct: 809 TFIREQAQRTGVALSGICFEITETAAISNLAQAAAFIEQMQALGCVFALDDFGAGMASFI 868

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL ++P   +K +GS +           ++  I  +   +    IA+ +  E ++  L  
Sbjct: 869 YLKHLPAAYLKIDGSFVREMLEDPVNQVMVEVIQRIGHAMGKKTIAEHVETEAELARLRE 928

Query: 930 MGCDYIQDSHVASPLGF 946
           +G D +Q  H+A P+ F
Sbjct: 929 LGVDLVQGHHIAPPVPF 945



 Score =  126 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ER  LAV GS D +WDWD+   ++  +P  A +LG    ++       L  +H  D 
Sbjct: 267 TSEERLQLAVGGSNDGLWDWDVRSGKLYFSPRCAQMLGFEPDALPHARETLLGLLHPADL 326

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + F   L   +  R       FR+R + + + W+  R R +   +G ++R  G   DI+E
Sbjct: 327 NGFDDKLWRHLR-RGDPYDANFRLRTSGDGYLWVRARGRLVRGDDGRVMRMAGSLTDISE 385

Query: 522 QKKSL 526
            K+  
Sbjct: 386 HKRYE 390


>gi|311693736|gb|ADP96609.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 758

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 221/435 (50%), Gaps = 13/435 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +KK    +   +  D+LTG+ NR   LDRL  ++            ++VI+ID +K IN
Sbjct: 325 AEKKRRLELSYLSRHDDLTGLLNRNGLLDRLDNLVPDRK-----PFCLIVINIDNFKGIN 379

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G+  GD+ L+   RR+ EL++  D LARL G+ + I+  +  N   +    +++  +
Sbjct: 380 DRFGLETGDETLLEFGRRLAELVESRDDLARLGGDEYAIVTPN-TNLDDVEKACVSLAGN 438

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++    +    + VTASIG A + +   + S+++++A LA+Y AK    N V  +R    
Sbjct: 439 LSRTFEVGRLRLQVTASIGVACFPNDGDSLSKLIRSAHLALYEAKQS-RNDVCIYRSEME 497

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +    +  ++ L   + +  LY+VY P +     + VGLEAL++W   + G +S +EF+
Sbjct: 498 MAYLRRLSVEQRLRYGLASGSLYMVYQPQVD-QTGKAVGLEALVRWQDEELGFVSPAEFV 556

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  ++  +  F+LE   R+   +R++     + + INI+       +  E +  ++
Sbjct: 557 EVAEKSGLMVPLGRFVLETSIREYSLFRNEVGG-SVDLSINISVIQFRQPDFVETVLEVL 615

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    SP  + L  +ES+ M + ER    + RLR+ GI +++DDFGT  S LS L  +P 
Sbjct: 616 AMHRVSPGELVLEITESLFMSDFERVLKTIERLREKGIRISMDDFGTGYSSLSLLRKLPL 675

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      EK   ++RSII +A++    ++A+ +  E     L  MGC   Q
Sbjct: 676 DELKIDKSFVDTILEDEKAANMIRSIIAIARSHNMELVAEGVEEEAQASALVEMGCRRFQ 735

Query: 937 DSHVASPLGFNSILK 951
             + + P   + +  
Sbjct: 736 GYYFSRPETLDRLKA 750


>gi|53802334|ref|YP_112869.1| EAL/GGDEF domain-containing protein [Methylococcus capsulatus str.
           Bath]
 gi|53756095|gb|AAU90386.1| EAL/GGDEF domain protein [Methylococcus capsulatus str. Bath]
          Length = 490

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 206/438 (47%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  K++E +   A  D +TG+PNRQ F DRL   L     D N    ++ +D+D +K IN
Sbjct: 46  EADKAIEQLDIKAHYDTVTGLPNRQLFCDRLLQALAAHERDGN-PVVLLFLDVDNFKSIN 104

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L +   RI   ++  D +AR+ G+ F I+L    ++L  A  A  +   
Sbjct: 105 DSLGHLVGDRLLRATAERIRTAVRDGDTVARIGGDEFTILLNGAKDTLNGALVAQKILDG 164

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +A P     ++I ++ SIG A   +   T  ++L+NA+ AMYHAK RG N+ + F    +
Sbjct: 165 LAQPFVFGAQQIVISVSIGIAVSPADGETMEQLLRNADTAMYHAKSRGKNNYQFFSPELN 224

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  I+ +L  A+   EL L Y P + L    IV LE    W   + G++   +F+
Sbjct: 225 VQAYRRQEIERNLRCALLQGELGLRYAPRVDLRSGRIVALEVCPFWLSSELGDVPPDDFI 284

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I ++           WR Q       +   ++ ++L D +  + + +L+
Sbjct: 285 PVAEETGLIVQIGIWAFRTACAHAAVWRTQGLA-DRCLSFRLSQRELDDPQFGDRIMSLL 343

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  ++   SE ++M +   +  +L  L   GI  ++ DFGT  + L  L   P 
Sbjct: 344 DGCGLEPENLQFELSERMLMTHAAHTLAVLQELSNRGIRFSVGDFGTGNASLRRLRRFPI 403

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +          A++ ++I MAK++   ++A  +     +  L   GC + Q
Sbjct: 404 DELKIDLSSVRDIEPDSDDAAVITAMIAMAKSLRMDVVAVGVETPEHVAFLLERGCRHGQ 463

Query: 937 DSHVASPLGFNSILKLLK 954
              + + L    I  LL 
Sbjct: 464 GRLIGARLPPERIAALLA 481


>gi|254470462|ref|ZP_05083866.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
 gi|211960773|gb|EEA95969.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
          Length = 678

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/429 (26%), Positives = 220/429 (51%), Gaps = 10/429 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + ++ K+ + I   A  D LT +PNR  F D L   L  ++   +    V+ ID+DK+K+
Sbjct: 226 LHDRWKTSKTIRFLAHNDPLTHLPNRAVFSDELNKALRKASITAS-NVYVIAIDVDKFKE 284

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G A GD  L  ++ R+  L+    +++RLSG+ F +++  E  S  I   A    
Sbjct: 285 VNDNHGHAAGDTFLQIISDRLR-LVFSEHLVSRLSGDEFAVMIEGEYTSHDITVLAQRAL 343

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            +      +  +EI ++ S+G A  T +   SS +L  A+LA+Y +K+ G +    +   
Sbjct: 344 ATTNSNCVIDSKEIQISLSMGIAQATDAAWRSSRLLHCADLALYRSKNGGRSTYTWYESS 403

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +      R  ++ ++  A++     +VY   + L D ++   EAL++W HP+ G IS   
Sbjct: 404 MDEELERRRELEAEMIRALKLDGFSVVYQAQVGLADNKLKAFEALLRWVHPEKGRISPEV 463

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I+A+  ++L++   D  SW    + P + + +N +       ++ + +  
Sbjct: 464 FIPIAEDTGLIEALGEYVLKKACADAASW----SDPTLKVAVNFSPAQFKTGQIEQKISE 519

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + ++  +P R+++  +ES+++ +       L ++  +G+S+ +DDFGT  S LSYL   
Sbjct: 520 ALQESGLAPERLEIEITESLLIADTTSVVKSLKKIGDMGVSIAMDDFGTGYSSLSYLSRF 579

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF+ +K + S +    +     AI+ +II + ++++  I A+ +  E+  + L   GCD 
Sbjct: 580 PFNKIKIDRSFIMNIGKDAHTDAIVAAIIGLGRSLDVLITAEGVEDEMQAQILRAGGCDI 639

Query: 935 IQDSHVASP 943
           +Q  +   P
Sbjct: 640 VQGYYFGKP 648


>gi|149909689|ref|ZP_01898341.1| putative orphan protein; putative conserved domain [Moritella sp.
           PE36]
 gi|149807203|gb|EDM67158.1| putative orphan protein; putative conserved domain [Moritella sp.
           PE36]
          Length = 548

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 215/435 (49%), Gaps = 17/435 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DN TG+ NR  FL+ L + +            + ++D+D +K IND LG  VGD V+ 
Sbjct: 107 YLDNCTGLANRFKFLEMLDSKMAE----GQGNTALCILDLDDFKDINDTLGHNVGDQVIA 162

Query: 594 SLTRRIG-------ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            + +RI        +   +   + R+ G+ F I+++  +++  IA     + K+I   I 
Sbjct: 163 IIAQRIKLSLGYPLQPNMYKTDIFRIGGDEFAILIMDFSDAEDIAPILNQLLKNIRRKIE 222

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DR 704
           L    I +  SIG +        S  +LK A++AMY  K  G + V  F+    R    R
Sbjct: 223 LSGESIVIGVSIGVSISPEHGTCSDSLLKKADMAMYKVKESGKHGVAFFKPEYMRELEYR 282

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           V ++++L  A+ N E  + Y PII +  E+ +G EALI+W+HP  G +   +F+ +AE+ 
Sbjct: 283 VHLEQELNQAIINGEFEIYYQPIIDISTEKELGFEALIRWNHPVRGLVPPDDFIPVAEQT 342

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I  ++++++  D+   +   N P  FI INIA + L DN     ++++++    S
Sbjct: 343 GLIVPIGQWIIKQVCSDLALLQ--INNPEYFIAINIAPQQLADNAFVHNVRSILASYSLS 400

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P++I    +E+ +M     +  +L  L  +GI L +DDFGT  S  SYL    F  +K +
Sbjct: 401 PAQIHFEITETTLMNADSENLRVLRELNNLGIKLWIDDFGTGYSSFSYLHKFKFYGIKLD 460

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S + G   +E+   I++ I  M   ++  ++ + I      + L + GC  +Q    A 
Sbjct: 461 RSFIEGVVDSERSQKIVKGICAMGDALKLELLGEGIEHPGQAEFLLKQGCYKVQGYWYAK 520

Query: 943 PLGFNSILKLLKERF 957
           P+  +++   L  R 
Sbjct: 521 PMSLSTLNMWLANRN 535


>gi|291303798|ref|YP_003515076.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Stackebrandtia nassauensis DSM 44728]
 gi|290573018|gb|ADD45983.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Stackebrandtia nassauensis DSM 44728]
          Length = 840

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 219/439 (49%), Gaps = 8/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  + ++ +  +A+ D+LT +PNR+  ++ +   + L     N    VM+ D+D  ++IN
Sbjct: 395 ENSRLVDKLRFDAYHDSLTELPNRRRTMNVIEESISLIV--PNEIVAVMLFDVDSMREIN 452

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G A GD ++V + RR+         + R+ G+ F  +++   ++   ++ A  +R+ 
Sbjct: 453 DSIGHAAGDKLIVEVGRRLRGAAPPGAHVGRIDGDEFA-LVMRLPDAAAASELAGQIREE 511

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSS 699
           +  P  L    + + A++G A    S   +  +L+ A++A   AK+   G  V +  + S
Sbjct: 512 LQRPCTLGTLNVDIDAAVGIAIHPESGDKADTLLQRADVATQSAKNVTSGVQVYNVALES 571

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  DL  A +  EL + Y P I L D  +VG+E L +W HP  G+++  +F+ 
Sbjct: 572 GSVRRLGLASDLRRAFDAGELDVHYQPKITLTDRRLVGVECLARWHHPTHGDVAPEDFIP 631

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +  F+L         W +Q     I I +N++ + L D +    +  L+ 
Sbjct: 632 VAEHTGLLSRLTEFVLREGLSRASEWSEQ--NSAIGIAVNLSPRTLTDADFPSLVARLLD 689

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +      R+ L  +E  ++    +    L RLR +GI L +DDFG   S LSYL  +P  
Sbjct: 690 EYHVDAGRLTLEITEDGMVSAGGKMPHTLQRLRDLGIRLAVDDFGKGYSSLSYLRNLPAS 749

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S + G    E  +AI+R+++ +A++   T++A+ +  E+ +  LT MGCD  Q 
Sbjct: 750 EIKIDKSFVQGMATDEGDLAIVRAVVDLARHFHMTVVAEGVESEMTLSHLTEMGCDIAQG 809

Query: 938 SHVASPLGFNSILKLLKER 956
            + + PL  +  +  +  +
Sbjct: 810 FYFSRPLAADRFVAWMAAQ 828


>gi|227823439|ref|YP_002827412.1| putative transmembrane sensory box GGDEF/EAL protein [Sinorhizobium
           fredii NGR234]
 gi|227342441|gb|ACP26659.1| putative transmembrane sensory box GGDEF/EAL protein [Sinorhizobium
           fredii NGR234]
          Length = 769

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 151/786 (19%), Positives = 303/786 (38%), Gaps = 57/786 (7%)

Query: 203 AIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALS 262
             F T  Y+ + SS+     A+   +L ++         +    +  L +  A + + + 
Sbjct: 7   GAFPTDIYLSSVSSLYQHRRALVIGMLSHVVT----FLLVFLKTAEPLYLGCAIAIVIIW 62

Query: 263 SSLIIFLFMYLH----------WNRWHAKVGYITFSGIACIAILFCMSF-YYPMVTASIA 311
           +   + +  +              RW  +             +    +        + +A
Sbjct: 63  ALRNLDMRRFDRQDFSRADQAAVRRWENRYIVGGIGVTLTCGLACGYAIAVSQDSFSELA 122

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
            I++    +       Y    G ERAVLL+ +   + I    + +    R    ++   L
Sbjct: 123 CISVTLASMISLVGRNY----GSERAVLLLSSSACLPIVIGLVAL----RDPYMLVLAVL 174

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +   +     +   V   +      ++ I +   +   A+      +   +     V   
Sbjct: 175 ILPFIFTTWKMANNVRAFLYDNVLAAREIRTIAGQFDAALNNMTHGLLMLNGDNRIVVAN 234

Query: 432 PDIATIL---------GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
                +L         G+    +       +  +      N    LD  +  +R      
Sbjct: 235 DRACELLKLGGKVDMKGVVLDDVLQRAARQMS-LDAEKSANMVRQLDLLLKGKRS----- 288

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R      +  ++          NG+I   + I  D+T + ++ + IL     D LTG+P
Sbjct: 289 -RALVPVAEDLFLEFSAS--RRDNGEI---VLIFEDVTARVQAEKQILQMVRFDTLTGLP 342

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           +R    +     +       +    +++IDI ++K +ND  G  VGD +L ++  R+ ++
Sbjct: 343 SRDYLAELAQNAVA-GEAAPDRDVGLLLIDIAEFKHVNDTRGHVVGDKLLQAIAERLKQV 401

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                I ARL G+ F +   ++  SL + +    +   +            +  S GF  
Sbjct: 402 AGSGAIAARLMGDEFVVFFSNKAGSLGLDERIRDVHARMRGTYEAGGFTFYMIMSAGFVV 461

Query: 663 WTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
              S     ++   A+LA+   K R  GG       + +   DR  +K DL  A+ +  L
Sbjct: 462 AKRSAFRFEDLQIKADLALAETKSRDRGGCIAFEAEMDARYLDRQRLKSDLREALNSGAL 521

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y P+       +   EAL +W HP+ G +  S F+ +AEE+ ++  I  F+L +  R
Sbjct: 522 SVSYQPMYTPDGSRVECCEALARWTHPERGPVPPSVFIQLAEEMGLVTDITRFVLRQACR 581

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           D  +W        + + +N++  DL D ++ E +   + +    P+R+ L  +ES +M  
Sbjct: 582 DCSTWPQ-----GVAVSVNLSVLDLRDRQIVEIVGKALDEAGLDPARLHLEVTESCLMDE 636

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AI 898
           P + + LL  LR+ G+++ +DDFGT  S LS L  +P   +K + S +           +
Sbjct: 637 PAKGQSLLDELRERGMTIAIDDFGTGYSSLSSLDALPVSIIKIDRSFVRNIRGDARRFKL 696

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKLLKERF 957
           LRS + +A+ +    + + +    +++ +    C D IQ    ++P+  ++I  L K R 
Sbjct: 697 LRSAVNLARALGLKAVVEGVETVDELQLINNHRCADLIQGFVFSAPMPASAIRDLCKPR- 755

Query: 958 PLVKNT 963
            + K T
Sbjct: 756 -VRKRT 760


>gi|241554219|ref|YP_002979432.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863525|gb|ACS61187.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 788

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/467 (23%), Positives = 202/467 (43%), Gaps = 32/467 (6%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +   + E KKS       A  D LT +PNR  F  R    L  +  +   R  V ++
Sbjct: 310 LVRLRRSLGELKKSELHARQLALHDVLTDLPNRALFAMRFDECLAETQ-NSTERSAVALL 368

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD+++     RI  LL+  D LARL G+ F ++L    +   + 
Sbjct: 369 DLDRFKAVNDTFGHAAGDELIRMAAERIRSLLRPGDTLARLGGDEFALLLRDIKDHDHVL 428

Query: 632 -DFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A+   +  P  L   E    V  SIG      +   + ++++ A++A+Y AK  G
Sbjct: 429 PAICEAIVAELGKPFPLLRGEAVARVGGSIGVTVVPDAGRNADDIMRYADVALYEAKMGG 488

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCL------------------AVENSELYLVYHPII 728
                 +  S          +K +L                      +   L + Y  + 
Sbjct: 489 RGQWRLYSPSMDGGRNARDILKNELREVLAKGMASDGPHADPVSNRPDFGSLEVYYQTVH 548

Query: 729 RLMDEEIV-GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           R        G EAL++W H + G ++ + F+ +AEE  +I A+  ++L    R    W +
Sbjct: 549 RAEAGYAASGAEALVRWRHSQRGLLTPASFIPVAEEGGLIDALGFWVLREACRAACKWPE 608

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                  F+ +N++   L      E + A++ ++   PSR++L  +ES ++ +      +
Sbjct: 609 -----DTFVAVNVSPAQLRRPNFAEEVFAVLEESGLQPSRLELELTESSLIEDNSDVYTV 663

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPM 905
           L  LR  G+ ++LDDFGT  S LS+L     D +K + S ++         AI+ +I+ +
Sbjct: 664 LKSLRSRGVQVSLDDFGTGFSCLSHLLRFDIDRIKIDRSFVSQLGTKANGAAIIGAIVAL 723

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++N+  +  A+ +  +     L  +GC  +Q    + P+    +   
Sbjct: 724 SRNLGISTTAEGVETDYQRDFLAALGCTDLQGYFFSKPVPIGELDSF 770


>gi|328545040|ref|YP_004305149.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor [polymorphum gilvum SL003B-26A1]
 gi|326414782|gb|ADZ71845.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
            with PAS/PAC sensor [Polymorphum gilvum SL003B-26A1]
          Length = 1091

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 136/602 (22%), Positives = 254/602 (42%), Gaps = 27/602 (4%)

Query: 378  IVILIGFTVIQHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVR-DRVTTTPDI 434
              +      ++ V  T   ++   ++     LA  +  S + ++ +D             
Sbjct: 499  FALDADGRPVRTVGVTHDITERRRAEERSLRLANILEASLNEIYLFDAQSCRFTHVNRRA 558

Query: 435  ATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
                G +   +       L     + D   FR ++   +      L +E      D   +
Sbjct: 559  RENTGYSMDELKQRSAWDLK---PDFDESRFRALVVPLLEGATNSLHFETVHERKDGSRY 615

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQK-------KSLEGILCNAFQDNLTGIPNRQS 546
             + ++++  ++  G  L ++ I NDI+E+K       ++ E     AF D LTG+PNR +
Sbjct: 616  PVEVQLQLNTDV-GSPL-FVAIINDISERKLREDEVRRAKEAAERLAFFDELTGLPNRAA 673

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             L  +  +      D ++   ++ +D+D +K IND LG   GD  L +   R+      P
Sbjct: 674  CLRDVEPLF----GDGDVEHLIIHMDLDNFKLINDTLGHTAGDVYLRATGARLRAACAAP 729

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
                R  G+ F I++  + ++        A+   +  P++     I  T S+G A +   
Sbjct: 730  ARAYRWGGDEFVIVVPVDGDA-AARGACEAVFSCMRAPLDYEGATIWPTVSMGIARYPQD 788

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVY 724
                  ++ NA+LA+Y +K  G +    F             ++ DL  AVE  EL+LVY
Sbjct: 789  GTDFGALMVNADLALYRSKEAGKDRWSFFTTDMKADSDAEARVEADLYRAVERDELFLVY 848

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             P + +   E+ G+EAL++W HP  G +S +EF+ + E+  +   +   +L++       
Sbjct: 849  QPQVNIRSGEVTGVEALLRWQHPLRGALSPAEFLPVVEKSRLAPVVGAIVLDKALAAARI 908

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-R 843
            W D+       + +N++ + L        +   I K   SP RI +   ES+ + +   R
Sbjct: 909  WSDRGLDFG-RVAVNLSPQHLKAGTFLADVLNAIDKHDVSPDRITVEVLESIFLNDASCR 967

Query: 844  SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
               +L  L + G+ + LDDFGT  + LS+L  +P D +K + S         K   ++ S
Sbjct: 968  KIEVLEDLHRRGVHIELDDFGTGYASLSHLADLPIDGLKIDRSFTAQLLADSKAQVVVNS 1027

Query: 902  IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            II +A+ ++  I+ + I  +  +  L  MG   +Q   +A P  F      L+ R    +
Sbjct: 1028 IIHLARALDIGIVCEGIETDAQVARLRMMGDFSVQGYLIARPAPFEIFSAWLERRTEARR 1087

Query: 962  NT 963
            + 
Sbjct: 1088 SA 1089



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 89/241 (36%), Gaps = 20/241 (8%)

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
             ++ +   +   I  + +    + +   +        + A  ++   +++  + +   +
Sbjct: 309 VFLTGWRIKIAYGIPLLDVGGRPVGFLVTLEDITAALLDFASGVLGTILIVAAFAVLAGL 368

Query: 357 AI---TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
            +      L + ++                          G  ++ +     R   A   
Sbjct: 369 LVHRLAGHLQDTVVATRRRLEA----------------EVGLRTRALAESESRLREAQHI 412

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +    W+ D+V D    + +I  I G+   + +  IR+ L   H +DR      L   + 
Sbjct: 413 AAIGNWERDLVTDEAHWSDEIYAIYGVDPKTANPSIRSILSQTHPDDRAIILDTLRKALE 472

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 ++E R+   D +  W+ ++ R   +++G  +R +G+ +DITE++++ E  L  A
Sbjct: 473 TCSD-YEFEHRIIRPDGEVRWLHVKARFALDADGRPVRTVGVTHDITERRRAEERSLRLA 531

Query: 534 F 534
            
Sbjct: 532 N 532


>gi|289768928|ref|ZP_06528306.1| integral membrane phosphodiesterase [Streptomyces lividans TK24]
 gi|289699127|gb|EFD66556.1| integral membrane phosphodiesterase [Streptomyces lividans TK24]
          Length = 666

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 136/608 (22%), Positives = 254/608 (41%), Gaps = 31/608 (5%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L GG V++ +++   ++  +L     +Q +          V GS D++            
Sbjct: 13  LTGGTVVLALVVRQGIM--LLDNIVLTQELAQKENHFRSLVQGSSDVIMIAAPNGILRYV 70

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY---RRGRLQYEFRVRA 487
           +P  A + G  +  + G        IH  D       +  F+          + E R R+
Sbjct: 71  SPAAAGVYGRPAEELVGT--ELAGLIHPEDLGCVVHEVRRFLAANPVEEPTTRIECRFRS 128

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                 W+ +      +  G I      + D+TE+ +    +  NA  D LT +PNR  F
Sbjct: 129 GGGG-GWLNVESTVNRHHGGLIFN----SRDVTERVRLQAQLQHNAEHDPLTDLPNRALF 183

Query: 548 LDRLTTILDLSATDDNLRP----TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
             R+   L      D         V+ ID+D +K +ND +G   GD++LV   RR+ E +
Sbjct: 184 TRRVQQALSGRRASDRGAALRGTAVLFIDLDGFKGVNDTIGHQAGDELLVQAARRLHEAV 243

Query: 604 KFPDILARLSGNRFGIILISENNSLKIAD------FAIAMRKSIAMPINLLEREITVTAS 657
           +  D  +RL G+ F  +++ +    + A        A  +R +++ P  +   E+ V AS
Sbjct: 244 RKGDTASRLGGDEFAALIVGDGARDRAAREGHIRELADRLRLTLSQPYLIDGNEVRVNAS 303

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAV 715
           IG A +    + + E+L+NA+LAMY AK  G   VE +R    +       +   L  A+
Sbjct: 304 IGVA-FAEPGLGAGELLRNADLAMYRAKAGGKGRVELYRPQMQQDVVRKAELATRLRAAL 362

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            + E  L++ P++ L D  I  + A  +W   +    + +EF+ + EE      ++ ++L
Sbjct: 363 HDGEFALLHQPVVSLTDGRITSVCAQARWRSSQGVLFTPAEFLRVTEEGDRTAELDRWVL 422

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSE 834
                        A    + + I I ++ LLD  +    ++AL+++    P  + +  S+
Sbjct: 423 REAVEQAAE--RAAAGLSVSVAIRIGARRLLDRSMPLGSVEALLTRHGLPPGSLVIELSD 480

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
                  +     L  LR++G+ + LD FG+  + ++ L  +P D +K +  L+ G  E 
Sbjct: 481 IDPRVGLDELDRRLNALRRVGVRIALDGFGSGYAAITALRRLPVDVLKLDRGLVEGVVES 540

Query: 895 RI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                I   ++ +A ++    +A  +     I  L  MGC + Q    +  L    + + 
Sbjct: 541 ARLHKITSGLLRIATDLGLKSVADGVDLPEQIVALRAMGCTHGQGMAFSGALDEYRLRRA 600

Query: 953 LKE-RFPL 959
           L    +P+
Sbjct: 601 LAAGHYPV 608


>gi|226952687|ref|ZP_03823151.1| diguanylate cyclase/phosphodiesterase [Acinetobacter sp. ATCC
           27244]
 gi|226836555|gb|EEH68938.1| diguanylate cyclase/phosphodiesterase [Acinetobacter sp. ATCC
           27244]
          Length = 683

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/552 (20%), Positives = 227/552 (41%), Gaps = 13/552 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S D +   D+    +         L +   + H     W   +    R      L 
Sbjct: 134 MLDNSVDCIKLLDLDGYLLHVNRTGCIALNI-PENNHRFGMKWTELLAPEIRSKANYALK 192

Query: 470 SFVGYRRGRLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             +  +  R    FR  + + +   +    + P+ N  G I++ + ++ D+T Q+++   
Sbjct: 193 MVLKGKTAR----FRGMSGEGENKQYWDNLLTPILNDKGQIVQILCMSRDVTAQRQTEIQ 248

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +  ++  D LTG+ NR+ F  +L   L      +     ++++D+D +K +ND LG A G
Sbjct: 249 LRISSELDELTGLYNRRFFKLQLKRALQRHKKSEKF-LGLILLDLDYFKHVNDTLGHAAG 307

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  L++RI   L     +ARL G+ F I++    +  ++   AI + + +  PI   
Sbjct: 308 DHLLRILSKRIENTLPENTFVARLGGDEFAILVNGIEHEQELEKVAIDVSRQLDAPITYA 367

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVM 706
              I  + SIG A +      SS ++K A+ A+   K  G      F         +  +
Sbjct: 368 GNLINGSMSIGCAIYPRDAKDSSNLMKCADTALNDLKATGRGGFRMFNQQMEIAAQNIAV 427

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
                   + +  +   Y P +RL D ++VG EAL++W        S        ++  +
Sbjct: 428 QLNQARHIIRDDLMVPFYQPKVRLSDGKVVGFEALLRWQTDDKHIHSPCHIEQAFQDYVL 487

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              I+  +  ++ ++I  W +Q     + I IN A  + L +   E +   ++       
Sbjct: 488 ATRISDAIQNKVFKNIAMWLEQGLAV-VPISINAAPVEFLKDNYAERLLQRLNLYKIPHH 546

Query: 827 RIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +++  +E ++     +     L  L++ G+ + LDDFGT  S L+ L   P D +K + 
Sbjct: 547 LVEIEITEHILDDRGSDYVIRALNLLKQQGVKIALDDFGTGHSSLTRLRDYPVDCLKIDC 606

Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +          AI+++II +   +   I+A+ I     ++ L + GC   Q    +  
Sbjct: 607 EFIRQMNGDEAILAIVQAIIALGPKLALDIVAEGIENSDQLELLKQFGCSIGQGYLFSRA 666

Query: 944 LGFNSILKLLKE 955
           +       ++K 
Sbjct: 667 VNAQQATHMMKR 678



 Score = 61.1 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
                  +VW      D           +G+          NW+  +H+ D   F+    
Sbjct: 8   VFNHIPSLVWLLSDQGDAYFFNKVSQEYIGI--NEFQKFQNNWMDLLHLEDIAVFQKEWR 65

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
                +    Q E R+R     + W ++  + +    G    +   + DI E K+   
Sbjct: 66  QAFATK-APFQVECRLRHQSGAYRWFLLSAKFVEADQGGQAHWFINSVDIHETKQYQH 122


>gi|323493214|ref|ZP_08098344.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323312561|gb|EGA65695.1| sensory box/GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 1023

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 217/575 (37%), Gaps = 15/575 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              + V +     + ++      S        ++   D              +LG  S  +
Sbjct: 451  EARDVTSRKITEERLYQREANLSHYYDQQPVMMVTLDEQNRVQQVNQFAEQLLGYKSDQL 510

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             G       +   +D    R +L       +G  + +   R A+    W+   IRP+   
Sbjct: 511  LGH--RLKEFYLNSDALIARQVLLQPKQAIKGVWRRDIEYRHANGNTVWVRENIRPLV-- 566

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              +    + +  D+TE +K  E +   A  D LTG  +R  F   L   L   A+     
Sbjct: 567  --ESGHILIVGEDVTETRKLSEQLQYQAQHDLLTGTFSRNYFERELEKALREVASYTRTH 624

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              ++ ID+D+ K +ND  G   GD  +      + E+L +  ILAR+ G+ F I+L    
Sbjct: 625  -AMLYIDLDQLKVLNDTAGHEAGDAAIQFCASMLEEVLPYNSILARMGGDEFAILLKDCT 683

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                       +           +  + +  SIG      +  +   +   A+ A + AK
Sbjct: 684  ELDVKKVAGTIITTLSEHAFIWEDIRLNLNCSIGIRLIDHTASSPQMVHAQADTACHVAK 743

Query: 686  HRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEA 740
              G N    + +      R   + +    +  A+ N  + L    I+ L  EE  +  E 
Sbjct: 744  EEGRNRYSMYCLDDKELRRREQEMESVNLVHDALANQRIELFAQQILDLTGEEQGMHFEI 803

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            LI+  + +   IS   FM  +E   +   ++  ++ +    +    +          IN+
Sbjct: 804  LIRIKNAEGEYISPGIFMPASERYNIAHLLDKQVVTQALDYLSGNPEVLEHLN-TCSINL 862

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +   + + E    +   +S++     +I L  +E+  M N  ++     +L+ +G  + L
Sbjct: 863  SGHSMGNKEFIRFLLDKLSQSSVPCDKICLEITETAAMSNMNQAIEFFTQLKALGCQIAL 922

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
            DDFG+  S   YL  +P D VK +G  +           ++RSI  +A+ +    +A+ +
Sbjct: 923  DDFGSGLSSFGYLKKLPVDVVKIDGIFVRDIDVNEMDHLMVRSINDLARQMGKKTVAEFV 982

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                 I++L  +G DY Q   +  P     +++ L
Sbjct: 983  ENTHIIEQLMELGVDYAQGYIIGKPKPLAELIEEL 1017


>gi|303325956|ref|ZP_07356399.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863872|gb|EFL86803.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 742

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/572 (21%), Positives = 233/572 (40%), Gaps = 26/572 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448
           +       Q    D  R    +  +  +V++W        T+P I  +L   +G  +G  
Sbjct: 154 LARENALLQRRRLDELRYKAVLDHTNTLVFEWR-DNQPTYTSPHIPQLL---AGDYNGRW 209

Query: 449 -IRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               W     +   D   F+  L+  +       +   R+R  D +F W  +    +++ 
Sbjct: 210 LFDVWREDNVLSPEDGGIFKDCLN-ALEQGASSGEMTVRLRRRDGRFIWCRVTYTCLTDP 268

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  I RYIG  ND+ E  ++ + +   A  D LTG  N Q+F ++   ++       +  
Sbjct: 269 DLGI-RYIGTINDVDEVTRATQALRFRAEYDPLTGAYNMQTFFEKADLLI----RQGDGP 323

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISE 624
             ++  D+  +K IN++ G+  GD +L ++   + E +    +  ARLSG+ F   L   
Sbjct: 324 RHIVRFDVAGFKGINEMFGLEEGDRLLRAIAHLVREQIDKRLETFARLSGDVFVACLAG- 382

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  ++  F   + + +        +   V    G       +     +   A LA+   
Sbjct: 383 -DRERVRHFVGWLSRQLREY----TQSYRVMLFFGICPVEKRRTPVHVLCDWAHLALKTV 437

Query: 685 KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K     +   +         D   IK+ +  A+E  +  L   P + +    IVG EAL 
Sbjct: 438 KGSDLTNYAFYDGELRARLLDENNIKDQMHEALEKGQFVLYLQPKVEISSGRIVGAEALA 497

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G I    F+ + E    I   + ++ E+  + +  W D+    P  + IN++ 
Sbjct: 498 RWQHPTDGLILPGRFVPLFERNGFIVRFDEYIWEQTCKMLRLWLDK-GYRPTPVSINVSR 556

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               D+  C  +  L  K       ++L  +ES    +      ++  L++ G   ++DD
Sbjct: 557 MHFNDDRFCGKLLTLTDKYRLPRHLLELELTESAFFESERTLIRVMNDLQEQGFVFSMDD 616

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LS L  +PF+ VK + + ++     E+   + R+ + +A+ ++  IIA+ +  
Sbjct: 617 FGTGYSSLSTLRALPFNIVKLDRTFISDGTDNERGQIVARNTVTLARQLKMKIIAEGVET 676

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               + L  +GC+Y Q  + + P+       L
Sbjct: 677 VEQARFLLSIGCNYAQGYYYSRPVDPEEFEVL 708



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP----YIHI 458
           +  R +  +      +++ D   D       +  +L        G            IH 
Sbjct: 21  EQARYNCVLRSIFGEIFEVDFSGDS-YRLIHMGDVLFCPPPPGMGVAATLRAIAETLIHP 79

Query: 459 NDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRY 512
            DR+ F  +L+    ++   L       + R +  D Q+ W    + P++  ++G  L  
Sbjct: 80  EDREIFLHLLNPKTLHQGESLKQGYASGDVRKKCRDGQYRWARFTVFPLACAASGRPLHM 139

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
           I +  D+ EQK+++     NA       +  R+   +
Sbjct: 140 ICV-QDVDEQKRAVGLARENA-------LLQRRRLDE 168


>gi|323525643|ref|YP_004227796.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia sp. CCGE1001]
 gi|323382645|gb|ADX54736.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1001]
          Length = 604

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/558 (21%), Positives = 251/558 (44%), Gaps = 21/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D++   D     +  +      +G     +     +    +   D      +L    
Sbjct: 47  GAVDLLAHVDNELRFIYVSDASLRFIGYHREYLETITLH--ELVAQTDTARLDALLARAT 104

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                       +++     + + + +R + +S+  +  +     D++  + S E ++  
Sbjct: 105 TTGNVEKATLGLIKSL---TYPITVELRVVRSSHHGMEGFAIAGFDVSAWRASEERLIQA 161

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D LT + N+ + +  L      +         ++++DID Y+++N  LG   GD++L
Sbjct: 162 LHLDRLTNLANQSALIPALLEAQQRADAH-GTPAALLLLDIDDYQRVNRALGYDAGDEML 220

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK----SIAMPINLL 648
               RRI  +    + +AR++ + F I++    N    A  A A+ +    +I  P    
Sbjct: 221 RDTARRILNMTSPNETVARIASDEFAILVKPAANRTDAAAAAEALARRLLTAIQQPYVFN 280

Query: 649 EREITVTASIGFASWTS--SKITSS----EMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            +++ ++ASIG A +        ++     +L+ A+ A+  AK  GGN +  +    +  
Sbjct: 281 GQQVHLSASIGIALYPDVRHANDTAAHDTHLLRWADHALLQAKAAGGNTLAFYVPDDNPA 340

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI       +VG+EALI+W HP  G +  S F+ +
Sbjct: 341 DAERLKLEADLYDGVRNGEFSLHFQPITSSRTHGVVGVEALIRWMHPVHGLVPPSMFIPL 400

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     +I W  +      ++ +N++ +   D    + ++  I+ 
Sbjct: 401 AESVGLINFLGNWVLKVACMQLIQWDAKGISLQ-YVAVNVSPQQFRDPRFKDAVREAINL 459

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R+    +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   
Sbjct: 460 TGIDPRRLVFEITESLLMHDPAHAKVLLEDLTAMGIRFAVDDFGTGYSSLAYLQRFPLAK 519

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ  
Sbjct: 520 LKIDRSFVENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEAQRSLLTEMGCDHIQGW 579

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + R
Sbjct: 580 LVCQALPSDELAQRFEAR 597


>gi|187921819|ref|YP_001890851.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187720257|gb|ACD21480.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 644

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 220/452 (48%), Gaps = 10/452 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G     +    D      + E     A  D+LTG+PNR    + L    ++ A   + 
Sbjct: 185 AAGFFTVALRSNRDTVALLLARENSHRLAHHDSLTGLPNRARISELLLERTEMGALRKDQ 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ E+L   D++ RL+G+ F  +    
Sbjct: 245 SFAVLLIDLDGFKAINDSLGHAAGDQILQEAAIRLREVLPSGDLVGRLAGDEFVALSDGT 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +  +   A  + K++A P  L E  + + AS+G + +     T  ++L  A+ A+Y  
Sbjct: 305 GQARDVRILADRIVKTLARPFALREALVHIGASVGVSLYPEHAKTGPQLLICADRALYAV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F  +   SD    +++ DL  A+ +   L + Y PI+ L    + G EAL
Sbjct: 365 KRSGKSAFAIFDAAKHASDESLSLLRSDLEGALHSFSGLRMEYQPIVDLSSGAVTGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +S S F+  AE   +I ++  + L +  ++ ++WRD      + + +N++
Sbjct: 425 MRWTHPTRGELSPSAFIPTAERTGLILSLGEWALLQSCKEAVTWRD-----KVTVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      + A++ KT   P R+ +  +E+V++ +   +R  +GRLR +GI L LD
Sbjct: 480 PVQLREESFASTVSAILRKTKLPPQRLNIEVTETVLLDDDVVTRRNVGRLRALGIGLALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  S  +R   A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFSFDKLKIDSSFVKESVHRRESAAVVRGIVALAREIGIPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +  +   GC + Q   +  P+  + I +
Sbjct: 600 TQEQLDFVRVCGCTHAQGFLLGKPVQSHEIAR 631


>gi|262165866|ref|ZP_06033603.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025582|gb|EEY44250.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 625

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 207/443 (46%), Gaps = 7/443 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  + + +  +   D LT +PNR +  +RL   L   + D     T++   +  
Sbjct: 186 LKEIEQRTVAEDYLDFHRHYDPLTKLPNRVTLSERLQPELKKISDDQQ--ITLIYFSLRN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  VGD +L +L +R+   L    +LAR+ G+ F ++   + N  +      
Sbjct: 244 FKSVNDSYGYQVGDQILSALCQRLSHNLPENWLLARIVGSEFVLVARHKRNQAETKKVIS 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + ++  +P N     IT+   +G A        S   ++ A  AM  AK  G      +
Sbjct: 304 RVVQACTLPFNTNNLNITLQCHLGIALAPMDATDSLSFIQRASSAMSLAKKEGIQVSFFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                   +R+ ++  L  A+   EL + + PII    + +++G EAL++W +P+ GNI 
Sbjct: 364 LAAQKATEERLQLESHLLHALRLGELAVHFQPIIDLKQNGKVIGAEALLRWHNPQLGNIP 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AE    I  I  F+L +  ++   W       P  I +NI+     ++   E 
Sbjct: 424 PDQFIPLAESNGQIIEIGYFVLHQALKNASEWCKLT-TSPFKIAVNISPIQFREHRFVEY 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++     P  I+L  +E +++ +   ++  L +LR+ GIS++LDDFGT  S LSYL
Sbjct: 483 LKDLMTLYQLPPGAIELELTEGILLQDEHYAQSALAQLRQQGISISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      E+   + R+II MA  +   +IA+ +        +   G
Sbjct: 543 QKYSFDTLKIDRSFINQLEYNEQNRELTRAIIAMAHKLNMAVIAEGVEKTYQEDFVRTEG 602

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C++ Q       +  +  +KLL 
Sbjct: 603 CNFAQGFLYGKAMPVDEFIKLLT 625


>gi|319426515|gb|ADV54589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens 200]
          Length = 727

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 127/619 (20%), Positives = 247/619 (39%), Gaps = 31/619 (5%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT-VIQHVLATGYFSQGIFSDGER 406
               + + + I   L+  +               I     +   LA    ++  +   ER
Sbjct: 116 VFSCLDVGIRINGHLEGVLCIERTQVTPHWHDSEIHLACQMADQLALTLATKHAYDKEER 175

Query: 407 QSL---AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYI--HIND 460
            SL   A   S  +    ++  ++V         I GL      G     L +   H   
Sbjct: 176 LSLFRSATEQSQQMSMLINLHTEKVEYVNQAHGEITGLTREQSIGSHLRELTFFKQHPQ- 234

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                  L       + +   E + R AD  ++W+   +       G+    +    + T
Sbjct: 235 --LAEETLAQIFRGEQAK--GEVQFRRADGSYYWLKYVVSQFITERGNHYALV-SGEEST 289

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++      +   A++ +LTG+ NR  F   L           +L           +K+ N
Sbjct: 290 DEHNYKIELERLAWRCSLTGLHNRSHFNRVLERTSKGLLLLVDLVG---------FKRFN 340

Query: 581 DVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           D  G   GD +L+ + RR+     +     +AR+  + F ++L  +N    +  F+  + 
Sbjct: 341 DTYGHEHGDSLLIEIARRLKHFSEINKATEIARVGSDEFVVLLTDDNAVYDLDYFSTRLY 400

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++ P+ +   +I    ++      +S       L  A++A+ +AK + G  ++ F  +
Sbjct: 401 QHLSAPMLIGREQIEPKPALAVVDI-ASVANLFAPLTCADIAVQYAKKKKGTSIQVFNST 459

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             S   +  +I+ DL  A+   +  L Y P+  L  +  +G EALI+W HPK G +    
Sbjct: 460 LLSAFKEDALIERDLHSAIRGRQFELYYQPLRDLGLQTYIGAEALIRWHHPKKGVLYPGA 519

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  MI AI  ++LE   R +  W+       + + +N++++      L E +  
Sbjct: 520 FIDIAEQSGMINAIGSWVLEAACRQLNLWQHHNAD--LTMHVNVSARQFFSGNLYEQVWQ 577

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+++    P  + L  +E+ +MG+   + LL   L ++G+ L +DDFGT  S + YL   
Sbjct: 578 LLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQF 637

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S ++    + +   I+ +II MA  +  ++ A+ +        L +  C  
Sbjct: 638 PISKLKIDRSFISDLTISRESREIVSAIIAMANALNISLTAEGVETIEQEAFLAKSCCHQ 697

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    +  L      + L
Sbjct: 698 AQGYLYSPALREPEFAQFL 716


>gi|56461556|ref|YP_156837.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56180566|gb|AAV83288.1| Signaling protein with DMT-family integral membrane sensor domain,
           GGDEF and EAL domains [Idiomarina loihiensis L2TR]
          Length = 690

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 215/442 (48%), Gaps = 6/442 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++++        D LTG+ NR   + ++   ++     +N + T+M+I + ++K +N+ +
Sbjct: 239 RAIQRAEYLHTHDALTGVSNRDQLVSKIPLFIEYC-RSNNRQLTIMLIGVSRFKVVNENI 297

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI  GD VL  + RR+    K P  ++R+SG+ F I      +   I D A  ++ +++ 
Sbjct: 298 GIRGGDQVLKEIARRLQNFRKQPLAVSRISGDVFAIAFDHLKSRSLIKDLAAELQDTLSK 357

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI + E+ + + A IG + +      S  +L  A +A+  AK      V  +        
Sbjct: 358 PIEVGEKTLNIAAGIGISRYPQHGSRSEVLLNKATIALTQAKQSHQPSVTVYERGMDEMY 417

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              V ++  L  A+  +E  L   P      +++ G EALI+W HP  G +S +EF+   
Sbjct: 418 SYLVDMEPILRRAMRENEFTLYLQPQFDFDHQQLCGFEALIRWQHPDRGLLSPAEFLPYI 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+L +   ++ ++L   A  + SW+ +       I +N+++      +L E MQ L+   
Sbjct: 478 EQLGLSTELDDWVLNHAAAILASWKQKFG-LCWPIAVNLSAPQFQHFQLIEKMQQLLEDY 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  ++L  +E+V M +      ++ RLR++G  +++DDFGT  S L+YL  +P + +
Sbjct: 537 SISPEWLELEITENVAMSDLHNGMSVIQRLREMGFGISIDDFGTGHSSLAYLRSLPINKI 596

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++        + IL+++I ++  +   +IA+ I  E     L ++GCD +Q   
Sbjct: 597 KIDRSFVSELQQNNNDVTILKAMIRLSHGLGKRVIAEGIETEEQQDMLQKLGCDMMQGYF 656

Query: 940 VASPLGFNSILKLLKERFPLVK 961
            + P+      + ++ +    K
Sbjct: 657 YSPPMRLQFAEQFIERQIQGDK 678


>gi|28871350|ref|NP_793969.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854601|gb|AAO57664.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331015611|gb|EGH95667.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 784

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 209/430 (48%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + I+  K I++      
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSSIAADR-----PVALLYMGIENLKTISESSNAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L  + +R+    +  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VDQLLRQVGQRLQSNSRAGDTVARLSANEFLLLLDNTAS-DGAVGIADALQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
              +  +   IG   +     ++ E++  A +A   A    G   +           ++ 
Sbjct: 466 DNHDYALECCIGITVYPEHGDSAQELVNRAAIARKDATFLPGRLQIYQDGRDVAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTTWVIEEAIRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYGLPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRDLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
              +    + 
Sbjct: 764 TAGAFEAWIA 773


>gi|330812567|ref|YP_004357029.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380675|gb|AEA72025.1| putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 556

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/471 (24%), Positives = 223/471 (47%), Gaps = 16/471 (3%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D    W+   +R + +S   + R +       E+      +   A QD LTGI NRQ F
Sbjct: 86  PDGVSDWL---VRDVLDSA-TLRRCLRHVR---ERGVLENTLQRLAEQDPLTGIANRQGF 138

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   L     +D     +  +D+D ++  ND LG   GD +++ +  R+   L+  D
Sbjct: 139 QTLLAARLA---ENDGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKGSLEAGD 195

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            LARL  + F +++ +     +    A  + +++A P  +    + +  S+G A   +  
Sbjct: 196 QLARLGSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESLLIGCSLGVAHARAQA 255

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYH 725
             +  ++ +A +AM  AK   G     F     R+ R    ++ +L  A+   EL L Y 
Sbjct: 256 -GADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESELRRALRRDELELHYQ 314

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L    IVGLEAL++W H + G +  SEF+ +AE+  +I  +  +++ R  RD+ + 
Sbjct: 315 PRLNLDGGHIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQAL 374

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           R++    P+ + +N++ +   D++L   +  LI++       ++   +E+ VM   E  +
Sbjct: 375 RERGLA-PLHMAVNLSFRQFQDSQLLPTLSRLIAERGVEAQWLEFELTETAVMRRSELVK 433

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
             +  L ++G+  +LDDFGT  S   +L  +P   +K + S + G    E+   ++ ++I
Sbjct: 434 QTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEQREENRKLVHAMI 493

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +A N+   ++A+ +  +  +  L   GCD +Q   ++ PL    +++ L 
Sbjct: 494 NLAHNLNLEVVAEGVETQEQLDLLRGFGCDQVQGFLISKPLPLPELVEYLT 544


>gi|85712214|ref|ZP_01043266.1| PAS:GGDEF protein [Idiomarina baltica OS145]
 gi|85694022|gb|EAQ31968.1| PAS:GGDEF protein [Idiomarina baltica OS145]
          Length = 769

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/463 (23%), Positives = 208/463 (44%), Gaps = 17/463 (3%)

Query: 495 MIIRIRPMSNSNGDILRYIGIA----NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +        +S   ++  +G+       + E+K+    +   A+ D LTG+PNR+     
Sbjct: 309 INEYTSTFVDSLHALISVVGVLIERNRMVQERKQFTVSLQYAAYHDELTGLPNRRKLDQE 368

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           + ++   +      + +V  ID+D +K IND  G  VGD +L  + +RI  L+   D +A
Sbjct: 369 IKSL---THRQQPSQFSVCYIDLDSFKPINDNYGHEVGDKILKLVAKRIKHLIGTQDSVA 425

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+SG+ F I+L +  N          +  ++A P  + +  I ++AS+G A + +    +
Sbjct: 426 RISGDEFVIVLNAPANDTD----YQKITDTLAQPYAIDDIMINLSASMGVAVYPNDTQHA 481

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPII 728
            ++++ A+ +MY AK  G N V          R  ++ + ++L  A+++ ++  VY P  
Sbjct: 482 DQLIRFADQSMYQAKSEGKNQVSIHDAKKASAREHKIELIKELMYAIDDRQIECVYQPKF 541

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +    +VG+E L +W H K G +    F+   E      A++ ++L    +    WR  
Sbjct: 542 DMNTNTVVGVEVLSRWRHKKRGLLMPGAFIPQVEGSQAAIALDHYVLNEAHQLQAVWRRS 601

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + + +NI             ++A+        + I L   E+  + + + +  +L
Sbjct: 602 GRD--LNLSVNIGGDYFTSELFKRRLEAMAESNTGRNNGITLEILETTTIDDLDEAVEIL 659

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
            R  + G    LDDFGT  S L+Y   +P D +K + S +T         AI+ SII ++
Sbjct: 660 NRCHECGYRTALDDFGTHYSSLTYFRRLPVDEIKIDRSFITNLKPNTNDEAIVESIIYLS 719

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +     ++A+ +  +     L  +GC  IQ   ++ P+    +
Sbjct: 720 RRFNRDVVAEGVETQEQADHLQALGCHLIQGYLISPPVSLEEL 762


>gi|258627446|ref|ZP_05722227.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258580252|gb|EEW05220.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 625

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 207/443 (46%), Gaps = 7/443 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  + + +  +   D LT +PNR +  +RL   L   + D     T++   +  
Sbjct: 186 LKEIEQRTVAEDYLDFHRHYDPLTKLPNRVTLSERLQPELKKISDDQQ--ITLIYFSLRN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  VGD +L +L +R+   L    +LAR+ G+ F ++   + N  +      
Sbjct: 244 FKSVNDSYGYQVGDQILSALCQRLSHNLPENWLLARIVGSEFVLVARHKRNQAETKKVIS 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + ++  +P N     IT+   +G A        S   ++ A  AM  AK  G      +
Sbjct: 304 RVVQACTLPFNTNNLNITLQCHLGIALAPMDATDSLSFIQRASSAMSLAKKEGIQVSFFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                   +R+ ++  L  A+   EL + + PII    + +++G EAL++W +P+ GNI 
Sbjct: 364 LAAQKATEERLQLESHLLHALRLGELAVHFQPIIDLKQNGKVIGAEALLRWHNPQLGNIP 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AE    I  I  F+L +  ++   W       P  I INI+     ++   E 
Sbjct: 424 PDQFIPLAESNGQIIEIGYFVLHQALKNASEWCKLT-TSPFKIAINISPIQFREHRFVEY 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++     P  I+L  +E +++ +   ++  L +LR+ GIS++LDDFGT  S LSYL
Sbjct: 483 LKDLMTLYQLPPGAIELELTEGILLQDEHYAQSALAQLRQQGISISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      E+   + R+II MA  +   +IA+ +        +   G
Sbjct: 543 QKYSFDTLKIDRSFINQLEYNEQNRELTRAIIAMAHKLNMAVIAEGVEKTYQEDFVRTEG 602

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C++ Q       +  +  +KLL 
Sbjct: 603 CNFAQGFLYGKAMPVDEFIKLLT 625


>gi|87199424|ref|YP_496681.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135105|gb|ABD25847.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 567

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 218/463 (47%), Gaps = 16/463 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           RY+ +  ++ +++++ E     A  D LTG  NR+S    +  ++  + T  +    VM+
Sbjct: 98  RYVDLTREVGQRREAEETAHKLAHTDPLTGCLNRRSMGPAVEQMVSTARTSGH-EVVVMM 156

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII-LISENNSLK 629
           +D+D +K+ NDV G   GD VL+    RI  +L    I+ARL G+ F    +   ++   
Sbjct: 157 MDLDNFKRSNDVHGHQAGDAVLLHTADRIRAILPAGSIIARLGGDEFACAAIFDPDHVES 216

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT-----SSEMLKNAELAMYHA 684
           I    + M +++AMP+ +    + VTASIG A+ +++        +  +L  A+LAMY A
Sbjct: 217 IDRLILRMNEAVAMPVRVDGLMLEVTASIGLAATSAADAGAPPALADTLLHRADLAMYQA 276

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N    F  +     R    ++ ++   V   E    Y   I L   E+ G E L 
Sbjct: 277 KKAGRNRYCWFEQNMESELRFRSELEREIREGVARGEFVPYYEKQIDLETGELTGFEMLA 336

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G +S   F+ IAEE+ +I  ++  ++ +  RD   W      P + + +NI+ 
Sbjct: 337 RWRSPRHGLLSPEIFIPIAEEIGLISELSENLIRQALRDARDW-----DPTLTLSVNISP 391

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L D    + +  L+ +  + P R+ +  +E+ +  N    R L+  L+  GI ++LDD
Sbjct: 392 IQLRDPWFAQKLLKLLVEANFPPHRLDIEITETCLHENVGVVRTLITSLKNQGIRISLDD 451

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+ L  +PFD +K +   ++     +    I+ +I  + K ++  I A+ I  
Sbjct: 452 FGTGYSSLAQLRTLPFDQIKIDRFFVSNLGKNKDSATIVEAISSLGKGMDLPITAEGIES 511

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              + EL + G    Q      P   + I  +L +R  L +  
Sbjct: 512 PEVLDELRKFGKFKGQGFLYGQPGDASEIRAMLADRQLLQQQA 554


>gi|83745693|ref|ZP_00942751.1| Hypothetical Protein RRSL_04759 [Ralstonia solanacearum UW551]
 gi|207739467|ref|YP_002257860.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|83727770|gb|EAP74890.1| Hypothetical Protein RRSL_04759 [Ralstonia solanacearum UW551]
 gi|206592844|emb|CAQ59750.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 646

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 205/440 (46%), Gaps = 11/440 (2%)

Query: 527 EGILCNAF----QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           E +   +      D LTG+P        L   +  S+        +  +D+D   +IN+ 
Sbjct: 207 ERMAHQSTPPEPHDALTGLPTHPQLRQALDDAILSSSRQGR-PFALFHLDLDGLGRINEQ 265

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  +  R+ + ++  D + RL  + FG+++         A     +   + 
Sbjct: 266 YGRATGDRVLQIVAERLRQTMRDEDTVVRLGSDEFGLLVEGLPLPEAAAPIGDKLLFRLR 325

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSF 700
             + +  R + VTASIG A    +  T+  +L +A+ AM+  K   GN    +    ++ 
Sbjct: 326 ESVEVDGRRLRVTASIGVAIHPYNGATADALLAHADAAMFECKQAAGNAYRFYEPRLNTT 385

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + I+  L  A  N +L + Y P      + + G EAL++W+HP+ G +S +EF+ +
Sbjct: 386 AHRVLQIQRALSHAALNGQLSVYYQPKFDAHTQSMTGAEALLRWNHPELGPVSPAEFLPL 445

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I  +  +++E + R I+ W D A M P+ I +N++ +     +L + +  ++ +
Sbjct: 446 AERTGTIIELGDWVVEEVCRQIMYW-DTAGMAPLKIAVNLSPRQFQQPDLVQRLSQILHR 504

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +  R+    +E+  M +  +S   + +++ +G+ + +DDFGT  S LSYL       
Sbjct: 505 YQVAADRLMFEITETAAMRDAGQSIAAIRQIQSLGVEVAIDDFGTGYSSLSYLQRFRAQQ 564

Query: 881 VKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           +K + + ++   +      AI+R+I  MA +++ T++A+ +     ++ L  + CD +Q 
Sbjct: 565 IKIDRTFISALDDNPSESYAIIRAICAMAHSLDMTVVAEGVETGAQMQALVNLHCDQVQG 624

Query: 938 SHVASPLGFNSILKLLKERF 957
             +  PL       L+  + 
Sbjct: 625 YLLGRPLAAREFQTLIDRKQ 644


>gi|167569477|ref|ZP_02362351.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia oklahomensis C6786]
          Length = 611

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/558 (21%), Positives = 239/558 (42%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRDLIPEQD----TATLDGLL 107

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 108 ARASETGDVEKATLCLVKSLTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L      +         ++++D+D Y++IN  LG   GD +
Sbjct: 168 ELHHDPMTGLDNLSALLPALMRAQQTADEGGGCT-ALILLDLDDYQRINRALGYDAGDAL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 227 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAAIDAAEALARQLQTAVQQPYAHG 286

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 287 GQAVHLSASAGIAIYPDARAASKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI +     +VG+EALI+W HP  G ++ + F+ +
Sbjct: 347 DAERLKLEADLYNGVRNGEFSLHFQPITKSHTGAVVGVEALIRWHHPVHGLVAPATFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 407 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGIDPCRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L    + +  + +
Sbjct: 586 LVCQALPSEELAQRFEAQ 603


>gi|330873473|gb|EGH07622.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
            syringae pv. morsprunorum str. M302280PT]
          Length = 1158

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 224/478 (46%), Gaps = 11/478 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 686  QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 744

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                  + R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 745  ESEQEAHLRYILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVVDDEGDLASYVCFF 802

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 803  SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQQAERQQ-AWVVLMFLDLDRF 861

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
            K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 862  KPINDSLGHAAGDRMLQEMATRLLACVSADDTVARMGGDEFTLLLQPDITREAALTRAIH 921

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ 
Sbjct: 922  VAERILTSLVTPFVLEGREFFVTASIGIALSPQDGSELSKLMKNADTAMYHAKECGKNNF 981

Query: 693  ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 982  QFYQTDMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRG 1041

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++   D +L
Sbjct: 1042 LVPPNDFIPVLEELGLVVEVGDWVLTEACRQLKHWHQAKVRVP-KVSVNISARQFSDGQL 1100

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             + +  ++ +T  SP+ ++L  +ES++M     +  +L  L+ +G+S+ +DDFGT  S
Sbjct: 1101 GKRIAHILEQTGLSPACLELELTESILMREVNEAMQILDGLKNLGLSIAVDDFGTGYS 1158



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 537 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDAHLTVNYVSPSVERALGYSAD 596

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVG-----YRRGRLQYEF--RV-----RAADN 490
            +      W   I +      F  ++              RL+ E   R+       AD 
Sbjct: 597 WI--TRNGWSAAIANPQQLTGFDALISRISKVLNKPQELARLRDEVTTRMFLFDCLRADG 654

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +R+  + + +G+     G+  DI++Q+++ + +   A 
Sbjct: 655 RKIPVELRVVLVWDEHGNFEGIFGVGRDISQQRRAEKDLRMAAT 698



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQ 480
           + +  + +       LG     +H     +    +H  D  +++ + L          LQ
Sbjct: 444 LSQRMIYSNHHFGHTLGYNKFELHAMGEFFWEILLHPEDAKSYQDMRLRQRHHGHNELLQ 503

Query: 481 YEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCN 532
              R R  +N +    +R + +  ++   + R IGIA DITEQ       + S +     
Sbjct: 504 CVLRFRDHENNWRCFDVREQALAWDTEHLVTRIIGIAKDITEQVASSQSLRDSEQRYRML 563

Query: 533 A 533
           A
Sbjct: 564 A 564


>gi|257796214|dbj|BAI39461.1| putative phosphodiesterase/diguanylate cyclase [Gluconacetobacter
           intermedius]
          Length = 865

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 216/450 (48%), Gaps = 26/450 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++ E I   +  D LT +PNR+     +  +L            ++ + +D +K IN
Sbjct: 411 ERHEAKEHINRLSDFDLLTSLPNRRWLRQNMARML---RRHVRGNLMLLTVGVDNFKHIN 467

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DV G   GD+++  +  ++ E+L   D L R  G++F I+   E      +  +  + + 
Sbjct: 468 DVFGHTAGDELIAYIAGQLREVLTIDDTLVRSGGDQFTIVTNGEQ--QHASSLSATILRV 525

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           ++ P ++    ++++AS+G A    +      +LKNAE AM+ AK  GG H   F  R++
Sbjct: 526 LSTPTHIGAVPVSLSASLGVAVHPENGEDGDTLLKNAETAMFQAKANGGGHCCFFSPRMN 585

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              SDR+++   L  A+ +  L L Y P +     ++ G+EAL +W  P  G +S + F+
Sbjct: 586 QQASDRLILAAALRDAITHDRLRLFYQPQVHARSGQLYGVEALSRWIDPSLGFVSPARFI 645

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L      +  W       P+   +N++     D  L E +  L+
Sbjct: 646 TVAEETGQIEAIGKWSLRAACMQMAQWVGDGVDVPVV-SVNLSPLHFRDETLPEFVDKLL 704

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T   P R+ +  +ES ++ N ER+  +  +LR++G+ +++DDFGT  S LS L  +P 
Sbjct: 705 NETGIPPQRLTIEITESTMIDNYERTIRVAQKLREMGVGMSMDDFGTGFSSLSNLAGLPV 764

Query: 879 DTVKFNGSLMTGSTEKRIAILRSI----------IPMAKNIETTIIAKDIYGEIDIKELT 928
           + VK + S MTG        L SI          + + +++  T++A+ +  E   + L 
Sbjct: 765 NEVKIDRSFMTG--------LESIEKVRAVVMAVVRIGQSLGMTVVAEGVEHEEQRRLLA 816

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            M CD +Q    + PL    +        P
Sbjct: 817 DMDCDVLQGYMFSKPLPAEELAAWFSAYQP 846



 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 6/163 (3%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                      +  + +   +    +I+ +       + I       SL V  +   V  
Sbjct: 95  LDGTSFWANLSLSRIAVDGKIGYMALIRDISQEVDDREKIRL----LSLVVRETDRGVAI 150

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +      + + G     + G   + +      D      + +     R     
Sbjct: 151 LDPEFRIIYVNRAFSDMFGFGPERVTGHGLSVILAGDTTDIGILNKLHEGARNARG--FT 208

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            E R R A  +  W+   + P+ + +G++   + +  DITEQ 
Sbjct: 209 LEIRARHASGRDIWVSAAMNPVFSESGEVENIVVVLTDITEQH 251



 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 15/132 (11%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   V   D              +   A   + G     +  +      N R+  D
Sbjct: 16  ALEQTILGVVLIDENNTVTFFNRAAERLWHCARQDVIGRN---VNVLVP---RNIRSTHD 69

Query: 470 SFVGYRRGR-------LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             + + R            E  V   D    W  + +  ++  +G I  Y+ +  DI+++
Sbjct: 70  DLIRHNRETGINKIVGTSREVLVERLDGTSFWANLSLSRIA-VDGKI-GYMALIRDISQE 127

Query: 523 KKSLEGILCNAF 534
               E I   + 
Sbjct: 128 VDDREKIRLLSL 139


>gi|146275877|ref|YP_001166037.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322568|gb|ABP64511.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 656

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 200/439 (45%), Gaps = 11/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K  E     AF D L+G+PNR+  L RL   L+           V+ ID+D +K +N
Sbjct: 211 ETEKLSEENRRIAFSDPLSGLPNRRELLSRLDR-LEGGPDPVRDTLAVIFIDLDGFKAVN 269

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD ++ S+ +R+         LAR+ G+ F I+    +   +    A  + + 
Sbjct: 270 DEHGHQAGDALIRSICQRLSRHCPAHARLARVGGDEFAILFEGHSAEAEAIALASTLLEE 329

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I++P+ +    + V  SIG A+ T    T  E+L+ A+ AMYHAK +G   +  +     
Sbjct: 330 ISLPVLVERHVLQVGGSIGVAANTDMAATPRELLRRADTAMYHAKTQGKGQIAVYDADFD 389

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 +  +  +   +   E  + Y P +     E+V +EAL++W     G +   EF+
Sbjct: 390 EGRLRRLAVETQIGRGLSRGEFDVHYQPEVDAQTGEVVAVEALLRWPRRPEGPLPPDEFI 449

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE    I  + +F+LER  RDI        +  + + +N++     D+     +  ++
Sbjct: 450 EIAEATGQIHPLGMFVLERACRDIA------PLGSLRLSVNVSPAQFRDSHFERQVAHVL 503

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T + P R++   +E  ++ NPER    +   +  G+S+ LDDFGT  + + YL    F
Sbjct: 504 EQTRFPPERLQFEITEGYLLANPERVVRAVETFKARGMSIALDDFGTGFTSIHYLRSYGF 563

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + SL+ G      A  ++   I +A  ++  +IA+ +  E     L R GC  +Q
Sbjct: 564 SHIKIDKSLLDGLAPGSKAAMLVTGAIMLACGLDMRVIAEGVETEEQANLLRRAGCHELQ 623

Query: 937 DSHVASPLGFNSILKLLKE 955
                 P+     +  ++ 
Sbjct: 624 GYLFGRPMALAEFVPWIER 642


>gi|240173013|ref|ZP_04751671.1| hypothetical protein MkanA1_27111 [Mycobacterium kansasii ATCC
           12478]
          Length = 617

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/450 (23%), Positives = 197/450 (43%), Gaps = 7/450 (1%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +  + E +   A  D+LTG+ NR++ L  L+  L            V+ +
Sbjct: 154 VAALFAQLQARIAAEEKLRYLAEHDDLTGLHNRRALLAHLSERLA---AGTPGPVAVLYL 210

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+ K IND LG   GD  +    +R+   +    ++ARL G+ F +I     +     
Sbjct: 211 DLDRLKSINDYLGHNAGDWFIRLFAQRLRGCVGGQSMIARLGGDEFVVIPDQAMSKGAAE 270

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   +   + +   +IT T SIG A     +   +++L+ A+ A+  AK  GGN 
Sbjct: 271 SFARRLSSMLRERLAIGGHQITRTVSIGLAVGMPGRDDGTDLLRRADEAVLTAKRAGGNQ 330

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V                I+  L   +++  L L Y P + L    +V  EAL++W HP W
Sbjct: 331 VALATDDMSLKSAFRNDIELHLQGDIDSDALVLHYLPEVDLWTGAVVAAEALVRWRHPIW 390

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +    F+ +AE   +   +   ++     +   WR         + IN++   L+   
Sbjct: 391 GLLLPDSFIGVAESTNLAGELGRCVMRSACAEFSRWRKNGVGQSAVLRINVSPVQLITRG 450

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +   I +       + L  +E  V+ + E +R  L  L+ +G+ + +DDFGT  ++
Sbjct: 451 FVRSVADTIEEFGIDGGSVCLEITERAVVHDIEATRKTLSELKDVGVQVAIDDFGTGYAV 510

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS+L  +P D +K +   +         +AI+R+II +A+     ++A+ +        L
Sbjct: 511 LSHLKSLPVDMLKIDTGFVRDLGTNAGDLAIVRAIIGLAEAFGLQVVAEGVETPAAALTL 570

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            + GC   Q   ++ P+  N++  LL  R+
Sbjct: 571 MQHGCHRAQGFLLSRPVPGNAMEALLSARW 600


>gi|226226534|ref|YP_002760640.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
 gi|226089725|dbj|BAH38170.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
          Length = 825

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/597 (21%), Positives = 245/597 (41%), Gaps = 17/597 (2%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           + ++  AL           G  + +         Q    + +     +      V   D 
Sbjct: 197 SLLVSHALASRSANKNAAEGRRLREITRQLRASEQATRRNAQLLQALMGVLPVGVVVQDQ 256

Query: 424 VRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRL 479
             + +     IA  LG  +   +          +  +D    D         +     R 
Sbjct: 257 SGNLLLVNDAIAPTLGRGSHTDLLPKASGLPFDLRADDEAESDRHLRAFQEHLESGEQR- 315

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             E+ V   + Q   +++  +P+   +  +L  +  A DITE+K     +   AF D LT
Sbjct: 316 SGEYTVLH-NGQERTLLVTGKPVRILDDPLL--VSTALDITERKLLERDLSRRAFHDPLT 372

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR    D + + L      D     +  ID+D +K+IND    A+GD +L ++ +R+
Sbjct: 373 GLPNRVRMQDIVASSLRR--HTDGGMFALAFIDLDNFKQINDYYSHALGDALLKAVAKRV 430

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            + ++  D LAR+SG+ F +++    +   +      + +++  P  +   EI  +AS+G
Sbjct: 431 TQHIRSGDTLARISGDEFLLLIDPLQDESDLPPLIDRVIEALKQPFEIEGHEIMTSASMG 490

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVEN 717
            + +     T   + + A+ AMY AK         F  S   +    +  ++ L +A+ +
Sbjct: 491 ASIYPLHGATYEALCRCADGAMYRAKRDRKGSATYFNDSMGHALTARMDTEQRLRMAIRD 550

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
               + Y     + +  +VG EAL++W            F+ +A EL ++ AI  F++++
Sbjct: 551 RRFRVAYQAKFGMRNRGVVGFEALVRWVDSDGTVHMPDSFIELASELGLLDAITEFVVDQ 610

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           +A  +    ++     +   +NI+++   D          +        RI L  +E  V
Sbjct: 611 VAEHMPILTERFGR-DVSFSVNISARQAGDLSFMTQFIERLQARGI-ADRIMLELTEDAV 668

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKR 895
           +      R +L +LR  G  L +DDFG+  S L+ L  +  D VK + SL+T      + 
Sbjct: 669 LVTHRFERGVLPQLRAAGGRLAIDDFGSGYSSLAMLADMTVDEVKVDRSLITEIHQRPRS 728

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSILK 951
             ILR+I  +   +   ++A+ +    +++ LTR      +Q  H   P+  + +L+
Sbjct: 729 QGILRAIESLCMGLGADLVAEGVETAEELEYLTRYTRISIVQGFHFTRPMFIDDLLQ 785


>gi|296535624|ref|ZP_06897803.1| possible PAS:GGDEF [Roseomonas cervicalis ATCC 49957]
 gi|296264048|gb|EFH10494.1| possible PAS:GGDEF [Roseomonas cervicalis ATCC 49957]
          Length = 820

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/614 (20%), Positives = 247/614 (40%), Gaps = 25/614 (4%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIV--ILIGFTVIQHVLATGYFSQGIFSDGERQS 408
            +G  +    +      +  +          +L   ++ + +       Q +     R  
Sbjct: 208 MLGHILRQRHQGGGYRWRHWVEIAAFDEHGRMLEIHSIGRDITELQDAMQRVSESEHRFR 267

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             V    + +   D     +     +  ILG     +HG   + +      D       L
Sbjct: 268 AVVENIAEGIVLADSHGHILYANRKVVEILGWGVEELHGRHVSQIGN--PLDAGELGPYL 325

Query: 469 DSFVGYRR---GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           + ++  R    G    E   R  D +   +   +  +   +G +  +IG+  D T   ++
Sbjct: 326 ERYLRVRPAPVGSSGQESFARHRDGRMLRIHFSLSEV-ELDG-VRHFIGVLRDNTAIHEA 383

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I   AF D LTG+PN++   + L  +LD        R T++++D+  +  +N  +G 
Sbjct: 384 QQRIERLAFNDELTGLPNQRRLKEELGRLLDR----PGARCTLLLVDLVDFSALNGTIGF 439

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD VL +  RRI ++L    +LAR   +RF ++L    ++      A  +  S+   +
Sbjct: 440 AAGDRVLRTAARRIADVLPHDSLLARFGNDRFAVLLRDVADAEAGPVLAGRIAVSVEGAV 499

Query: 646 NLLEREITVT---ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                E        +IG A           +L+ AE+A+  AK R    + SF  +    
Sbjct: 500 PEGHGESGFRLPPVTIGIAMAPHDDTRPDGLLEAAEIALLDAKGRAPGSIRSFMGAMRSK 559

Query: 703 DRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                     L  A++   L++   P        + G EAL++W       I  ++F+ +
Sbjct: 560 AARRFATAQGLRRALDQGGLFIEVQPRYTADQRRLTGGEALVRWRREDGCLIPPTDFVPL 619

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I+ +  F+ +++   +   R     P   + +N     L  + L   + A +++
Sbjct: 620 AEETGLIQPVTEFVFDQVMPLLARLR-----PGQRVSMNFPPAQLARHNLTAMIAARLAR 674

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R+ +  +ES ++G P      L  L+++G ++ +DDFGT  S LS L ++P D 
Sbjct: 675 QGVPGDRLGIELTESALIGGPGLLDENLRELQRLGCAVAIDDFGTGYSSLSRLRHLPIDE 734

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +  +       A L++I  MA  +   ++A+ +  E ++++   +GC  +Q  
Sbjct: 735 LKIDRVFIRDAARDAAGVAFLQAIGAMANALSLRLVAEGVETESELEQARSIGCHEVQGW 794

Query: 939 HVASPLGFNSILKL 952
               P+  +  + L
Sbjct: 795 LWGRPMAPDEFIAL 808



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 62/250 (24%), Gaps = 14/250 (5%)

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
           ++       +  +       + R  L +  L          + G     L  P       
Sbjct: 12  LSLFLARCPLPAFLAGRFDGVYRFVLVNPALAQAAGRGIEALTGRSPEELFPPELAQHLN 71

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             +       + +D     P   G     + LI         A          +  R+ +
Sbjct: 72  AQLDAAWTSQQAIDLTACLPHETGPRDWDMALIPLPDASGATAMLVGYGIDPGEMARRRM 131

Query: 410 AVLGSGDIVWDWDI-----------VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           A    G +V D  +                      A  +      + G     L  +  
Sbjct: 132 AHQTGGQLVVDTFLAQEALVCRTLPDSRFTFVNAAYARAMQRGPQHLLGRR---LADLLP 188

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +         + +      L +  R R     + W         + +G +L    I  D
Sbjct: 189 EEEWAAALAHRARLTPAEPMLGHILRQRHQGGGYRWRHWVEIAAFDEHGRMLEIHSIGRD 248

Query: 519 ITEQKKSLEG 528
           ITE + +++ 
Sbjct: 249 ITELQDAMQR 258


>gi|256395338|ref|YP_003116902.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Catenulispora acidiphila DSM 44928]
 gi|256361564|gb|ACU75061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Catenulispora acidiphila DSM 44928]
          Length = 1117

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 127/587 (21%), Positives = 244/587 (41%), Gaps = 30/587 (5%)

Query: 379  VILIGFTVIQHVLATGYFSQGI--FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
             + I        L     SQ I            V  + D +   D        +P    
Sbjct: 517  ALEILGRQASAALERIALSQEITRRDSEAYFRALVQNTSDTILIVDTGLTVRYASPSSTG 576

Query: 437  ILGLASGSMHGPIRNWLPYIHINDRDNFRTI---LDSFVGYRRGRLQYEFRVRAADNQFH 493
            + G     +                         + +     +  ++ ++ + A   + H
Sbjct: 577  LFGGRP--LRDRPLT-------EVVGKVYAAEVAVRAADPTPQPPVRRDWEISADGGEPH 627

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             +   I  +  +   +  ++   +D+T  +     +  +A++D LT +PNR +F+  L  
Sbjct: 628  EVEATIADLR-AEPTVGGFVLSLHDVTTARGLERTLQRHAYRDPLTDLPNRLAFIRGLED 686

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             ++L+    ++  TVM++D+D++++IND  G   GD+VL  +  RI   L   D+LAR  
Sbjct: 687  AVELA--SPSVSVTVMLLDLDRFREINDFHGREAGDEVLRDIAERIRSRLGPGDVLARTG 744

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+ F ++ +  ++   I    +        P  +    I VT S   A+ T     +  +
Sbjct: 745  GDEFAVLAVRRSDEAPILPIGM---PGEDKPFYVG--PIAVTTSGAVATCTVGASGA-SL 798

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLM 731
            L +AE+ ++ A+  G N   ++                 L  A+      L Y PI+ L 
Sbjct: 799  LADAEMTLHAARGAGPNTWRAYDPRLRADLARSAARRSGLDRALAEGSFELYYQPIVWLD 858

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQ 788
            D +I G EAL++W  P    I   EF+ +AE    I  +  ++L         W   R  
Sbjct: 859  DGDIGGFEALVRWPQPDGTIIPPDEFIPLAEATGQILPLGRWILRTATDQAARWNVTRLA 918

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              + P+ I +N+++  L D    + +   ++     P+ + +  +ES ++     +   L
Sbjct: 919  QGVAPVKISVNVSAHQLRDPGFPDEVGKALTDAGLDPAFLMVEATESSLIDRAGTALANL 978

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
              L + G+ ++LDDFGT  S LSYL  +P +T+K + + + G     ++ A+++ II +A
Sbjct: 979  RTLTRSGVGVSLDDFGTGYSSLSYLRDLPVNTLKIDKAFVDGVPDEPRQTALVKGIIGIA 1038

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            K++   ++A+ +      + L RMG D  Q    A P+  +   KL+
Sbjct: 1039 KSLTLMVVAEGVETSQQRRALARMGADLGQGYLYARPMRVDEATKLM 1085


>gi|326795148|ref|YP_004312968.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326545912|gb|ADZ91132.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 846

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 212/441 (48%), Gaps = 6/441 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D  E  K+   +   A  D LTG+PNR S +  +   +  +  D   R  VM +D+D
Sbjct: 386 ITKDFNELNKTKNKMEYMALHDELTGLPNRVSLIKEINMGVAYA-RDTKSRLAVMFVDLD 444

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND+ G  VGD +L  ++R+   L+   D+++R  G+ F     +  ++ +    A
Sbjct: 445 NFKNVNDLYGHGVGDQLLEVVSRKFESLIGVRDLVSRFGGDEFIFCFPTIKSAEETQQIA 504

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHV 692
           I ++  +A  I +  R +T + SIG A +      +  ++  A+  +Y  K   +G    
Sbjct: 505 INIQNLLADAIIIEGRVLTTSCSIGVAMYPEDSDDAETLISQADTVLYRVKATKKGSILF 564

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               VS     R+ ++++L   ++  E+Y+ Y P I L   ++ G+EAL +W + K G +
Sbjct: 565 YDDSVSEQIKYRMTVEDELVRVIKRDEMYICYQPQIDLKTNKLYGVEALARWKNEKLGFV 624

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ IAEE+ +I ++  ++  +    +I  +       I +  N++   + D     
Sbjct: 625 SPETFISIAEEIGLIHSLGFYLFRKACEGLIE-KFPNGKEAIALSFNVSPLQIFDPSFGM 683

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  +  +      RI L  +E++ + + +  +  L  LR+ G  L+LDDFGT  S LSY
Sbjct: 684 SLVQMCQEIGIDTDRITLEVTENIPISDLKNIQPYLTELREAGFGLSLDDFGTGYSSLSY 743

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +P   +K + + +    E      ++R I+ + ++  T ++++ +    ++ +LT M
Sbjct: 744 INNLPLTEIKIDRAFVNQFLENHQTEMLVRMILGIGQSCGTRVVSEGVETIEELNKLTDM 803

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GCD  Q  +  +P+    + K
Sbjct: 804 GCDLAQGYYFDAPIRIEELAK 824


>gi|152990819|ref|YP_001356541.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151422680|dbj|BAF70184.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 587

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 218/444 (49%), Gaps = 12/444 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++   + +      D LT +  R  F++ L  +L  S     L   ++ +D+D +K IN
Sbjct: 137 EKEYYQKRLEFMTKYDPLTNLYQRNLFIEFLEKLLKRSDRTKEL-MAILFLDVDNFKDIN 195

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD VL ++  R+  + +  DI++R+SG+ F +IL    +   I      ++K 
Sbjct: 196 DTFGHDMGDCVLKTIANRLTSISRQEDIVSRISGDEFAMILWGLKSKEAIYSLLDRLQKE 255

Query: 641 IAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +  PI+   + I ++ SIG   +     I ++E+LK A+LAMY+ K +       F    
Sbjct: 256 MRKPIDCNGKMINISMSIGATFYPQDRAIGANELLKQADLAMYYIKKKKKGEFFIFDPYD 315

Query: 700 FRSDRVMIKED-----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 M + D     +  A  N E  L Y P I L + ++ G E LI+W+HPK G +  
Sbjct: 316 SNFAGSMRECDQRVVEIERAFINHEFVLYYQPKICLKNRQLKGYEVLIRWNHPKKGILIP 375

Query: 755 SEFMLIAEELC-MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           S F+   E    ++K ++ ++LE++A+DI  +    +       +NI   D+      + 
Sbjct: 376 SHFLPYIENNESLMKQLSHYVLEQVAKDITDF--MLHDTSSDFSVNITVYDIESEIFLDF 433

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            Q ++ +   S SR      E+  + +  R++ +   L+ +G  + +DDFGT  + L+Y+
Sbjct: 434 FQDILKRYNISASRFVFEIVETSALKDLLRAKKMFEELKDLGSKIAIDDFGTGYASLTYM 493

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D VK + S +    E + +  I+++ I +AK     IIA+ +  E  ++EL ++G
Sbjct: 494 QNFDVDFVKIDTSFVVNMLEDKKSYEIIKASIALAKIFGYKIIAEGVENEAIMQELEKLG 553

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           CDY+Q  ++A P+    IL+ LK 
Sbjct: 554 CDYVQGFYIAPPMPKEEILEKLKN 577


>gi|124268513|ref|YP_001022517.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
 gi|124261288|gb|ABM96282.1| diguanylate cyclase/phosphodiesterase [Methylibium petroleiphilum
           PM1]
          Length = 684

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/433 (24%), Positives = 212/433 (48%), Gaps = 10/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + +   A  D LTG+PNR +  D         A        V++ID+D++K IND  
Sbjct: 249 HAEQRVKHLAASDLLTGLPNRAALHDE-MAAAMARAERAGTHLAVLMIDLDRFKPINDRH 307

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL  + RR+  +L+  +  AR  G+ F +++  +         A  + ++++ 
Sbjct: 308 GHLVGDRVLKEVARRLCHILRGGETCARYGGDEFVVLVDDDVQPSAAHHLAERVVRAMSE 367

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFR 701
           P+ +    +T+ A++G A +      + E+L+ A+ A+Y AK   RGG    +  +    
Sbjct: 368 PMQIGPLSVTIGATVGIARFPDDGRDADELLRKADSALYRAKAESRGGLSFYNVGLDELV 427

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R  +++ +   +   E    + PI+ L  + +  +E L +W HP+ G +  ++F+ +A
Sbjct: 428 AERAALEQAMRDGLTRGEFVAYFQPIVELNSQRVQSVELLARWQHPQRGLLPPAQFIALA 487

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I A+ L +L     ++ +           + +N+A + + D  L   + AL+++ 
Sbjct: 488 EDAGLIGALMLSVLRNAFAELPALPAH-----WRVSVNVAPQQIQDETLVPQLLALLAEH 542

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+R+ +  +E+ ++ +   +R ++  L+  G ++TLDDFGT  S L+YL  + FD +
Sbjct: 543 GVPPARLDVELTETALVRDTSAARRVMRDLKLAGFTVTLDDFGTGHSSLAYLAELDFDKI 602

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +   ++ +II +++++    +A+ I  E D   L RMGC   Q   
Sbjct: 603 KIDRSFVHTLRERPQSAKVVDAIIGLSRSLGVPAVAEGIETEADATRLLRMGCALGQGYL 662

Query: 940 VASPLGFNSILKL 952
              P+    +  L
Sbjct: 663 FGRPVPAGELPGL 675


>gi|320326735|gb|EFW82780.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 554

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/442 (23%), Positives = 208/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 110 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLTARLAEGGSLALGHLDLDNFRR 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 165 ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 225 DVLSEPYWVDGESLLLGCSLGIAHSQTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 283

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 284 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWRHQARGLLPPSE 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  +Q    P+ + IN++ +   D++L   +  
Sbjct: 344 FVPLAEQSGLIVPLGYWVIFRALRDMQALHEQ-GFAPLHMAINLSFRQFQDSQLLPTLSL 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSSFMHLNSL 462

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 463 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 522

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 523 VQGYLISRPLPIADLVAYLRSE 544


>gi|218675829|ref|YP_002394648.1| Conserved hypothetical protein with GGDEF and EAL domains [Vibrio
           splendidus LGP32]
 gi|218324097|emb|CAV25255.1| Conserved hypothetical protein with GGDEF and EAL domains [Vibrio
           splendidus LGP32]
          Length = 731

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 218/450 (48%), Gaps = 8/450 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++   + I   A+ D+LT +PNR  FL  L  +L+      N R TV++IDI +++ IN
Sbjct: 281 QRRALTKEIETLAYYDSLTKLPNRLGFLRSLDELLNKHKE-KNERITVLIIDIKRFRDIN 339

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILI--SENNSLKIADFAIAM 637
           + LG   GD +L+ L  R+       D  LARL  N+F I +     N       F   +
Sbjct: 340 NTLGYKAGDTILLHLANRLSACTTMVDFNLARLDENKFCIAVPAKEHNGDQGSDAFFAML 399

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++  I + E +I + A++G    ++   +SSEML  A +A+Y +K +G +     + 
Sbjct: 400 IDVVSNEIIIDENKIKLVANLGATCSSNGAQSSSEMLIQANIALYVSKEKGDDITVKHQP 459

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +    R+ + +++  A+EN E    Y P   L    I+G EAL++W  P    +   
Sbjct: 460 ELSNAALRRITLIKEINNAIENREFIPYYQPQFCLKTNRIIGAEALMRWKKPNGDLVRPD 519

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE+  +I  +   + E+   D   W++   +  + + +NI+S    +  + +  Q
Sbjct: 520 LFIELAEQSHLIIPMGAHIFEQATTDCQQWQNHKALAGVKVAVNISSIQFSEQNILDLTQ 579

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + KT  SPS ++L  +ES ++G+  +   +L  L+K+ I + LDDFGT  S LSYL  
Sbjct: 580 LTLEKTGLSPSLLELEITESAMLGDVSKVVAVLNDLKKLNIEIALDDFGTGYSSLSYLKL 639

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K +   +          AIL  I  +A  +   ++A+ I  +  ++ L R GC 
Sbjct: 640 LPIDRLKIDREFVKDLLSNTDDQAILSMICKLATELSLNVLAEGIEEKEQLEFLGRAGCH 699

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +Q  + A P+  +  +   K     + NT
Sbjct: 700 EVQGFYFAKPMPLDDFVLFAKNHNSELINT 729


>gi|291543662|emb|CBL16771.1| diguanylate cyclase (GGDEF) domain [Ruminococcus sp. 18P13]
          Length = 568

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 202/436 (46%), Gaps = 17/436 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR+S L  +   +             +++D+D +K IND  G   GD++L
Sbjct: 139 ANTDELTGLPNRRSLLRHVNRRISK-----GTPFAFVLLDLDNFKSINDTAGHEYGDEIL 193

Query: 593 VSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI----AMPINL 647
             + +R  E ++      ARL G+ F +I     +  K+                   ++
Sbjct: 194 QQIAQRWKEQVQNKNAFFARLGGDEFVLITDYNGDLGKLEQMLHEAINRAPSDKRTRFSV 253

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705
            +    +TAS+G + +       S ++  A++AMY AK RG   +  FR       +D +
Sbjct: 254 RDSSFFITASMGISLFPEHADNVSTLMSYADIAMYQAKARGRQGLCMFRQEMDSALTDNL 313

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I++ L  A++ +  +L + P   + D  + G E L++    K   +S   F+ +AE   
Sbjct: 314 QIEQMLRDALQENRFFLAFQPQYHISDHSLRGFETLVRMRDAKGNQVSPGRFIPVAEASA 373

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           ++  ++ +++      +     Q   P I + +N+++++LL  +    +Q L+  T +  
Sbjct: 374 LMIQLDQWIMGNALTCMQPVVAQ--HPDIILSVNVSARNLLHGDFSTYVQNLLRSTGFPA 431

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES+ + + E +  +L RLR IGI + LDDFGT  + LSYL  +P D +K + 
Sbjct: 432 RNLELEVTESLFISSLEHASKILNRLRDIGIRIALDDFGTGYASLSYLNRLPIDLLKIDK 491

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          A +++II M   +   +I++ +  +  +  L    CD +Q      P
Sbjct: 492 SFIDQINSDTNGNAFVKAIITMGHVLGCEVISEGVESDSQLDVLKGYACDLLQGFLWGKP 551

Query: 944 LGFNSILKLLKERFPL 959
           L F    + L ++ P+
Sbjct: 552 LSFEEAKQ-LAQKEPI 566


>gi|163782452|ref|ZP_02177450.1| hypothetical protein HG1285_06680 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882485|gb|EDP75991.1| hypothetical protein HG1285_06680 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 666

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 104/439 (23%), Positives = 206/439 (46%), Gaps = 10/439 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +   +   +  D LTG+PNR +F   ++  ++++         ++++DID +  IN  
Sbjct: 233 RVAESRLEALSLTDELTGLPNRIAFTSSMSKHIEIA-RAKKKSLVLILLDIDGFNNINQA 291

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD++L+ ++  I  +++  D++AR   + F ++++S +  L    F   ++ +  
Sbjct: 292 FGNAYGDELLIKVSLIIKSIVRKSDVIARTGSDEFSVLMVSGDPILSTTRFIQRLKDAFR 351

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
            P+ L E  I VT S G + +         +  NA  +M  AK  GGN    +  S    
Sbjct: 352 EPVILDEHRILVTFSAGISVFPLDSEDDKTLWANASASMNKAKSMGGNSSVFYSKSIAIA 411

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             D + I+ DL  A++  E  + Y P I L   + VG EALI+W       +   +F+ +
Sbjct: 412 SRDSIKIRSDLREAIDKDEFVMYYQPKIDLSTGKAVGAEALIRWI-KDGTVVPPMKFIPL 470

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE  +I  +   ++ ++ R +  W ++    P  + +N++   +      + +     +
Sbjct: 471 IEEGELIHEVGEIVIGKVCRQVKDWSEKGIRVP--VALNVSPSQIRSPAFSKALS--FQR 526

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              S   +++  +ES +M +  R+   + RL  + I   +DDFGT  S L+YL  +P   
Sbjct: 527 EDCSSGLVEVEITESAIMDDFHRAVGFIERLASLNIKTYIDDFGTGYSSLAYLKKLPVYA 586

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +    S      +++ I+ +AK     ++A+ +  E   + L RMGCDY Q  
Sbjct: 587 IKIDREFIKDFPSDRDSYEMVKVILSLAKTFGLKVVAEGVETEDQAEHLRRMGCDYAQGF 646

Query: 939 HVASPLGFNSILKLLKERF 957
           + + P+      +L +E++
Sbjct: 647 YYSPPVPAEEFERLYREKW 665


>gi|313673504|ref|YP_004051615.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940260|gb|ADR19452.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1110

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/560 (22%), Positives = 247/560 (44%), Gaps = 19/560 (3%)

Query: 405 ERQSLAVLGSG---DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHIND 460
           E+  LA          +   D+    +        I G     + G   + L   +H + 
Sbjct: 438 EKFKLAYDIIRHNLSGIVVTDLNGIILDVNDAFTKITGYERNEVIGKKTSILKSGVHDD- 496

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F T +   V  R G  + E   +  +N+ +   + I  + + NG    ++G   +I+
Sbjct: 497 --KFYTNIWENVSNR-GIWEGEIWNKRKNNEIYPEYLSIFTIKDENGKPKYFVGNFIEIS 553

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KK  E +   A+ + +T +PN++ F+++L   ++    +      V  +D+D +KK  
Sbjct: 554 EIKKYEEKLELLAYYNEVTKLPNKKFFIEKLRNFIND---NKGKDIAVCYLDLDGFKKFL 610

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G+ V + ++  ++ RI  +LK  DIL     + F  I    +++ ++  +   ++ +
Sbjct: 611 DKYGLEVSNKIINQISNRIMPILKKSDILGHFDEDIFV-IATIVDDTKELEGYLEKIQFA 669

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  PI +       T SIG   +        E++++A+ A++ AK+RG N +  F     
Sbjct: 670 IFRPITVDGVVWKFTCSIGVTIYPEDNDNPDELVRHAQQAVFQAKNRGKNRIVFFDTIMS 729

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   +  +    +   ++N E  L   P   +  +E+VG E L++W HP  G I  SEF+
Sbjct: 730 KQLAIKREKLAMIERGLKNKEFILYLQPKFNVEKKEVVGAEVLVRWVHPTHGLIPPSEFI 789

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ-AL 817
                  +    + +++ R    I     +     + + IN++   LL+ EL E ++  L
Sbjct: 790 PYISNSDIEVEFDKYIVSRAFECIDYLYSKG--LKVKLSINVSPNALLNEELIEFIRGTL 847

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++     S I++   ES  + +  ++  +LG   KIG  +++DDFGT  + L Y+  +P
Sbjct: 848 LTELKEKSSMIEIEIIESTSITDLNKASEILGEFNKIGFGISVDDFGTGYASLDYIKALP 907

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DTVK + + +         + +   +I +AK     I+A+ +        L ++GC+  
Sbjct: 908 IDTVKIDRTFVVDMLSDPTNLNVTEVVILLAKAFNKEIVAEGVENIETASALYKLGCNIF 967

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q   +A PL     + +  +
Sbjct: 968 QGYLIAKPLPIEDFVDMYHK 987


>gi|104781948|ref|YP_608446.1| diguanylate cyclase/phosphodiesterase [Pseudomonas entomophila L48]
 gi|95110935|emb|CAK15653.1| putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Pseudomonas entomophila L48]
          Length = 757

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 199/438 (45%), Gaps = 7/438 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   +++       A  D+L+G+ NR+ F++  T  L            ++ ID+D++K 
Sbjct: 310 IDRLEEAHRRSSHAAATDHLSGLHNRRQFVEIATQALAH-QRGRRRLMAILFIDMDRFKS 368

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  VGD +L ++  RI  LL+  D  +R  G+ F ++L  E    +I  +   + 
Sbjct: 369 INDSLGHKVGDLLLQAVAGRIQRLLEPDDEASRFGGDEFVVLLAGERGEEQIDAWVRMLV 428

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++    L  +E+  + S+G +           ++++A+ AMY AK  G      F  S
Sbjct: 429 EKLSATYALAGQEVNTSPSVGVSICPRDGQDIDTLIRSADAAMYSAKQAGRAQYRFFDPS 488

Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               D     +++    A+   +  L + P IRL   ++   EAL++W HP++G +    
Sbjct: 489 LNLPDIQAFTLEQAFGGALVERQFVLHFQPQIRLDTLQVHSYEALVRWQHPEFGLLYPDR 548

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +   +L     ++  WR         + +N+++  L   +  E + A
Sbjct: 549 FIGVAERSGFIVELGWEVLRLACEELARWR--LRDHSACLAVNVSALQLRQADFSERLLA 606

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     +P R++L  +E+ V+     +   L RLR  G+ ++LDDFG   +  ++L  +
Sbjct: 607 ELDSYGIAPQRLELEITETTVLDPQGCAVEHLHRLRAAGLGISLDDFGRGYAGFAHLQSL 666

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + +L+     +     I+ S I +AK +   ++A+ +     +  L   GCD 
Sbjct: 667 PLSKLKIDRALIAPLCNSHDDSPIVSSTIILAKRLGLEVVAEGVETREQVVCLKLAGCDI 726

Query: 935 IQDSHVASPLGFNSILKL 952
            Q  H + PL    +   
Sbjct: 727 AQGYHFSRPLSPAQLHDY 744


>gi|88860869|ref|ZP_01135505.1| sensory box sensor/GGDEF/EAL domain protein [Pseudoalteromonas
           tunicata D2]
 gi|88817082|gb|EAR26901.1| sensory box sensor/GGDEF/EAL domain protein [Pseudoalteromonas
           tunicata D2]
          Length = 791

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 221/433 (51%), Gaps = 7/433 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    I   A+ D LT +PNR  F   L + L            ++ +D+D++K++ND 
Sbjct: 346 QEREAQINQLAYFDTLTKLPNRNQFYSTLESRLHEHKKRA-ASLAILQLDLDRFKEVNDT 404

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD++L +L +R+   +     LA  + + FG+IL    + L++        K  +
Sbjct: 405 LGHEFGDNLLKTLAQRLKTFVYPQVFLAHFTADEFGLILPDI-DPLQLESILQQFEKLFS 463

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFR 701
           +   + +  + + AS+G A +      ++++L+ +++AM+  K +  ++      ++   
Sbjct: 464 LAFVVDDIALDIDASVGVAVYPQDAENAAKLLQCSDIAMHTCKDKHVHYLCYQPSLNKHS 523

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ +  +L  A+ +++L L Y P + +  ++IV +E L++W HP+ G I   EF+ +A
Sbjct: 524 LLRLSLMSELRAAILDNQLELFYQPKLDIEQQKIVSVECLVRWHHPEHGFIQPDEFIPLA 583

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I+A+  + ++       SW  Q     + + +NI++ DL+D +L   +  L+S  
Sbjct: 584 EQSGHIRALTEWAIKTALAQHKSWLKQGIE--LQMAVNISAVDLIDLKLPALVAQLMSSH 641

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  +KL  +ES VM  P+++   L  L ++GI L++DDFGT  S ++ L  +P D +
Sbjct: 642 GLSPHSLKLEVTESAVMAEPDQALQALCMLNQMGIKLSIDDFGTGFSSMAQLKKMPLDEL 701

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      E    I++S + +A N+  +++A+ +   + + +L   GCD  Q   
Sbjct: 702 KIDKSFVLDLNNDEDDEVIVKSTVELAHNLGLSVVAEGVEDLLTLNKLKGFGCDIAQGYF 761

Query: 940 VASPLGFNSILKL 952
           +A P+   + +  
Sbjct: 762 IAKPMTAENFIAW 774


>gi|88810303|ref|ZP_01125560.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Nitrococcus mobilis Nb-231]
 gi|88791933|gb|EAR23043.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Nitrococcus mobilis Nb-231]
          Length = 945

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 206/435 (47%), Gaps = 6/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E +   A  D LTG+PNR  F + L   L  +   +  R TV+ + ID ++++N
Sbjct: 505 EVAQRGEELAYLATHDALTGLPNRMLFSEHLRQALVEADRHNR-RLTVICLAIDHFQEVN 563

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG A GDD+L + ++R+G+ L+  D+LARL G+ F I+                +   
Sbjct: 564 NSLGHAAGDDLLCAFSQRVGQCLRRSDVLARLGGDEFIILCPEIVAPDFTIGITEKILSI 623

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +    +    E+ VT SIG A +  S  T   ++KNA+ AM  AK  G N    +     
Sbjct: 624 MEEGFHAGSNEVVVTTSIGVALYPESGKTVEALIKNADAAMRQAKAAGRNTYVLYGPELG 683

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                RV ++  L  AV N EL + Y P + L D  IV  EAL++W+ P  G +  + F+
Sbjct: 684 KTAHARVDLRRALRYAVRNGELRVHYQPQVELADGRIVAAEALVRWERPGHGLVPPNSFI 743

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I+  +L  +A D+  W +     P  I +N++++ L    L +  + ++
Sbjct: 744 PLAEESDLIVQIDSEVLRHVAADLQCWSENGFPLP-KISVNVSARQLYRGRLLDDFRQVL 802

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                +  R+++  +E +++    ++R +L  L  +G++  +DDFGT  S   Y      
Sbjct: 803 DHYPAARGRLEVELTERLLVDAVPQNRRVLDALVDLGVTFAIDDFGTGYSSFGYFRDFLI 862

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K + S +    E+     I  +II +AK  +  ++A+ +        L + GC   Q
Sbjct: 863 HTLKIDRSFIQQLAEEAADARITLAIIGLAKTFDIEVVAEGVELPAQQAFLCQHGCARAQ 922

Query: 937 DSHVASPLGFNSILK 951
                 P+  +  + 
Sbjct: 923 GWLFGKPMPTDEFIA 937


>gi|238061869|ref|ZP_04606578.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237883680|gb|EEP72508.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 843

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 209/440 (47%), Gaps = 8/440 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +        A  D LTG+ NR+  LD+ +  L+  A   +    +++ID++ +K++N
Sbjct: 369 ELARVANEHAYAATHDILTGLANRRHLLDQGSEQLN--ARYADGVTALVLIDLNHFKEVN 426

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD VL+ +  R+    +  D++ARL G+ F ++L         A  A A+  +
Sbjct: 427 DTLGHAAGDQVLMQVADRLRGAAQGGDLVARLGGDEFAVLLRGLPAPAVAAHRAEALLAA 486

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  P++L    I+V AS G +   +S      +L+ A++AMY AK  G      +    +
Sbjct: 487 LYEPLDLDGMRISVEASGGISVAPASGGMPE-LLRRADVAMYQAKRAGQRISTYAPTRDT 545

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  +L  AV + E  + + PI+ L   E+   EAL +W HP  G I    F+ 
Sbjct: 546 ADLGRLTLGGELPRAVADHEFTVNFQPIVDLCTGEVTSAEALARWHHPVHGVIDPLRFLQ 605

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++ A    +L++      +WR       + + +N++ + LLD      + A + 
Sbjct: 606 AVERSGLLPAFAEAILDQALIAAGTWRAAGFD--LPVAVNVSPRSLLDARFPGSVLARLR 663

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P R+ L  +E++ +   +    +L RLR  G+ L LDDFGT  S LS L  IP  
Sbjct: 664 AHDLPPDRLILELTETLTLSQLDVVDRVLSRLRDEGVRLALDDFGTGYSSLSLLSRIPVH 723

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++    + +  A++RS + + +++  T++A+ +  E   + L  +GC   Q 
Sbjct: 724 ELKIDRSFVSAMEGSAEAAAVIRSTLDLGRSLGLTVVAEGVESEPQRRALWELGCTAGQG 783

Query: 938 SHVASPLGFNSILKLLKERF 957
                P+   ++L  L   F
Sbjct: 784 HLFGRPVPAGTLLSTLHRGF 803


>gi|329904556|ref|ZP_08273862.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
 gi|327547916|gb|EGF32666.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Oxalobacteraceae bacterium IMCC9480]
          Length = 806

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/552 (20%), Positives = 222/552 (40%), Gaps = 14/552 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDR 461
           + ER  + +   GD V   +         P   ++ G       G         +H +  
Sbjct: 260 EHERTRVTLRSIGDAVITTNRFGLVEYLNPVAESLTGWRCIEAIGQPVDQVFRIVHQHSH 319

Query: 462 DNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                 +   +          +  + A     + +     P+  ++  +   + +  D+T
Sbjct: 320 AGVGNPVARCLAEGAITGATADALLIARHGAEYAVEDSAAPIFGADRLVSGAVMVFRDVT 379

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            Q+K  +     +  D+LTG+PNR+ F   L   L +SA  +++   +  ID+D++K +N
Sbjct: 380 PQRKLHQEAEHRSRHDHLTGLPNRREFEHLLEQ-LFVSARSEDVEHALCFIDLDRFKAVN 438

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  ++  + + ++  D +ARL G+ F ++L   + +             
Sbjct: 439 DSCGHAAGDLLLKKVSDLLRQCVRATDKVARLGGDEFAVLLQHCDLATARQIAQDICDHM 498

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             M      ++  + ASIG      S  ++S++ + A+ A + AK  G   V+    S  
Sbjct: 499 ADMRFLFDGKQFDIGASIGVVVLDGSWSSTSQVQQAADQACFAAKAAGRGQVQVGIGSGQ 558

Query: 701 ----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   +     L  A++N    L   P++ L D     +E L++        I    
Sbjct: 559 PGAAPEAPMPWSIVLQQALDNDRFVLFVQPVVGLDDGSGQHVEVLLRLQDDNGALILPGA 618

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           ++  AE   +  +I+ ++L R  R +      +      + INI+   ++D +  + +  
Sbjct: 619 YLPAAERCGLAVSIDRWVLARTCRWLA---SASGQAVASVAINISGASVVDPDFHQFVAG 675

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +        ++    SESV + +P +S++    + + G  L LDD G   + ++YL  +
Sbjct: 676 TLD--GMPAGKLFFEISESVPIEHPVQSQVFFDAMHRAGAQLGLDDVGRGLTSMAYLKRL 733

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +G ++T         A++RSI  +   +    +A+ +  E  ++ L  MG DY
Sbjct: 734 QVDYLKIDGQVVTSMASDAVNGAMVRSINEIGHLLGMRTVAEGVESEAVLQMLRVMGVDY 793

Query: 935 IQDSHVASPLGF 946
            Q  H   P   
Sbjct: 794 AQGYHTGKPQPI 805



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 59/208 (28%), Gaps = 2/208 (0%)

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
            L                  + + A + +  +   + + +     ++I         +  
Sbjct: 49  ALVGMPLDQLWSPAMRLGFHMRVMALLHLQGYVEEIALIMRGADGSEIPVLLNGVRRLHD 108

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            I +   V+  +         +F   +            V D D        +  I  + 
Sbjct: 109 GIAVTECVVIRMRERKRLEDELFRVKKATEQMPGAIYQFVLDADGTSRFPYASEGIRELY 168

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            ++   +    +     IH +D       +             ++RV        W+  R
Sbjct: 169 EVSPMQLRRDAKLVFQRIHPDDLVEVTEGVRRS-ALALSPWIQQYRVNLPRQGLRWLEGR 227

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSL 526
             P + ++G +L + G   DITE+K   
Sbjct: 228 SIPEARADGSVL-WHGYLVDITERKALE 254


>gi|209544499|ref|YP_002276728.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532176|gb|ACI52113.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 603

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 118/550 (21%), Positives = 230/550 (41%), Gaps = 43/550 (7%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSF-------VGYRRGRLQYEFRVRAADNQ-----F 492
           +   +   L  +  +     +  L          +   R   +  +R+     +      
Sbjct: 50  LRVNLEQGLEILSGDSLPRAKIALLEHMTLTDADIAALRANPEEAYRIVWRPGEDETHDI 109

Query: 493 HWMIIRIRPMSNSNGDILRYIGI-------ANDITEQKKSLEGILCNA------------ 533
                R   + +  G ++    +         D  E+  S     C A            
Sbjct: 110 ALSDCRASALFDGRGQLIGIFALYSRHRHGIADWGEKIVSHCRSSCVAIIEYGRTRRRLD 169

Query: 534 ---FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D LTG+PNR +  D L  +   +         ++++D+D ++  ND +G   GD 
Sbjct: 170 QIDRHDALTGLPNRAAIFDLLQKM---TTETPTSPFALIILDVDLFQDFNDAMGYEQGDR 226

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R     +   ++ RL G+ F I++  E ++    D A  +  ++  PI +  +
Sbjct: 227 LLQIVACRFSTHCRGDAVIGRLGGDNFAIVIPGEQDT-AANDLARDLVATLRSPIRIRGQ 285

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIK 708
           +I ++ S G  ++  +     +++ +A++A+  AK   RG               RV++ 
Sbjct: 286 DIVISCSTGIGTFPENGTEVEQVVHHAQIALREAKKATRGSVQNAPAATGDDVEARVLLG 345

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  AV+ SE  L Y P I +    I G+EAL +W HP  G I  S+F+ +AE+   I+
Sbjct: 346 SAMRKAVQKSEFRLFYQPQICMESGTIYGVEALARWYHPAMGLIQPSQFIPVAEQTGQIE 405

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I+ + +E   R +  W       P  + +N+++  + + +L   + AL+ +    P R+
Sbjct: 406 IIDRWSMEEACRQMAEWDRAGMRLP-TVSVNVSAVSIRNTDLPRRIAALLKRYRLEPRRL 464

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES +M     +   L  +  IGI L LDDFGT  S LS L ++P   +K + S +
Sbjct: 465 TVEITESAMMQQSRDTGATLSAMLAIGIGLALDDFGTGFSSLSRLTHLPLTEIKIDRSFV 524

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T        + +  + I + K +   ++ + +     +++L ++GCD +Q   ++ PL  
Sbjct: 525 TSLERDVGSMIVTEAAITIGKRLGVKVVTEGVEEIAQVRKLRQLGCDVVQGYLISKPLPS 584

Query: 947 NSILKLLKER 956
             I   L+ R
Sbjct: 585 AEIPNWLQSR 594


>gi|167562232|ref|ZP_02355148.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia oklahomensis EO147]
          Length = 611

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/558 (21%), Positives = 239/558 (42%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRDLIPEQD----TATLDGLL 107

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 108 ARASETGDVEKATLCLVKSLTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L      +         ++++D+D Y++IN  LG   GD +
Sbjct: 168 ELHHDPMTGLDNLSALLPALMRAQQTADEGGGCT-ALILLDLDDYQRINRALGYDAGDAL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 227 LRDTAQRLQRLATRGERLARVASDKFAVMLSAATRVAAIDAAEALARQLQTAVQQPYVHG 286

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 287 GQAVHLSASAGIAIYPDARAASKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI +     +VG+EALI+W HP  G ++ + F+ +
Sbjct: 347 DAERLKLEADLYNGVRNGEFSLHFQPITKSHTGAVVGVEALIRWHHPVHGLVAPATFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 407 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGIDPCRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L    + +  + +
Sbjct: 586 LVCQALPSEELAQRFEAQ 603


>gi|307152484|ref|YP_003887868.1| PAS/PAC sensors-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7822]
 gi|306982712|gb|ADN14593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7822]
          Length = 619

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/560 (20%), Positives = 230/560 (41%), Gaps = 15/560 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +FS+ E     +   G+ V   D              +LG     + G     +  +  
Sbjct: 54  ALFSEKELALATLQCLGEAVITTDTSSQITQCNSAAERLLGWTINQIRGLPSGEILRLFD 113

Query: 459 N-DRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
               +     +D  +  ++  RL+      A D + + + +   P+ +  G ++  + I 
Sbjct: 114 EVTGEAVENPIDKVLQQKQIIRLENSLTFVARDEKEYAINLTASPICSGEGQLMGVVVII 173

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +D ++ ++    +   A  D LTG+ NRQ F  R+   L+      N+  T+  +D+DK+
Sbjct: 174 SDHSQARQLTRQLSWQASHDPLTGLVNRQVFEQRVEKALENVK-SQNMTHTLGYLDLDKF 232

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD +L  ++  + + ++  D +ARL G+ FG++L++             
Sbjct: 233 KMINDSCGHVAGDHLLRQISFLLQQQIRSSDTIARLGGDEFGLLLLNCPIEEGKKIAETL 292

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +          ++  ++ ASIG     +     + +L  A+ A Y AK RG N + +F 
Sbjct: 293 RQALEDFRFIWEQQRFSIGASIGLVPIDAESADVTTLLDTADTACYVAKSRGRNRIHTFS 352

Query: 697 VS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGN 751
           +     + +    +    L  A+EN++  L    I  +         E L++    +   
Sbjct: 353 LDEEELNQQGQARLWVSRLNQALENNKFCLYTQRIAPITSAIGTNHYEVLLRLVDEQGNM 412

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-----ANMPPIFILINIASKDLL 806
           I    F+ +AE   ++  I+ ++++                 A    I   IN+++  L 
Sbjct: 413 ILPGNFLPVAERYHLMPMIDQWVIKNFFNHYAQHNKTSCFQTARQENIVYNINLSAVSLN 472

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + E  + ++  ++     P  +    +ES  + N  +++L +  L+++G  L LD+ GT 
Sbjct: 473 NQEFLDFLRQQLACPPIPPQSLCFEITESSALANFSQAKLFMDTLKQLGCRLALDNVGTG 532

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            + L+YL  +  D +K N SL+  +       +     +   +    IA+ +     ++ 
Sbjct: 533 INSLTYLKNLSVDYLKINMSLI--TDAVDYTFVECFNRIGHALGMQTIAEFVEHPGILEP 590

Query: 927 LTRMGCDYIQDSHVASPLGF 946
           L  MG DY+Q   +A P+  
Sbjct: 591 LKSMGIDYVQGYSIAEPVPL 610


>gi|37676663|ref|NP_937059.1| signal transduction protein [Vibrio vulnificus YJ016]
 gi|326424237|ref|NP_762417.2| putative signal transduction protein [Vibrio vulnificus CMCP6]
 gi|37201206|dbj|BAC97029.1| predicted signal transduction protein [Vibrio vulnificus YJ016]
 gi|319999622|gb|AAO07407.2| Predicted signal transduction protein [Vibrio vulnificus CMCP6]
          Length = 532

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 220/442 (49%), Gaps = 8/442 (1%)

Query: 519 ITEQ--KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           I+++  K+    +   A +DNLT + NR +    +   L+  A D +   +V+ ID+D++
Sbjct: 81  ISKRLAKEKNRTLAKQAVEDNLTRLYNRHALNTYINKKLEKLAKDPDEAFSVLFIDLDRF 140

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND +G  +GD VL  +  R+    +  D   R  G+ F I L   +N   +A  A  
Sbjct: 141 KVINDSMGHLIGDLVLKQVASRLLLNARKQDSCYRFGGDEFVICLPGLHNQETLARIARR 200

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVES 694
             + I  P N+ E+   +  S+G A+   S  T +++L+ A+ AMY AK           
Sbjct: 201 YAELICEPYNIEEKICQIGVSVGIATVADSSYTLAKILREADTAMYRAKKSEDSKVVFFD 260

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +    + R   +++L  A+E  +L+L Y PI     EE++ +E L++W HP  G IS 
Sbjct: 261 NDMFVQATKRFTFEQELSFAIEREQLHLKYQPIFSNDGEELISVEVLLRWYHPDNGWISP 320

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEG 813
           ++F+ IAEE  +I  I  +++ER    +    ++     +    IN+++K  ++ ++   
Sbjct: 321 ADFVPIAEEAGLINKIGDWVIERTCHVVAQLSERYCAQELPRFNINVSAKQFINGQVLYS 380

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + + +++       I +  +E+ ++ + + +  +L +++ +GI+++LDDFGT  S L+ L
Sbjct: 381 LNSHLARFACPAELIGIEITETSLLSDSKATIDVLNKIKALGITISLDDFGTGYSSLAML 440

Query: 874 GYIPFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
              P D VK + S +        +   +  +II MA  I+ +++A+ +     +K L   
Sbjct: 441 NQYPIDVVKMDRSFVKHVDDVHHRSAQLCFAIINMAHTIDLSVVAEGVETLEQLKILKTF 500

Query: 931 GCDYIQDSHVASPLGFNSILKL 952
            CDY+Q    A P+    + +L
Sbjct: 501 HCDYVQGYLTAKPMNLEELEQL 522


>gi|312963829|ref|ZP_07778300.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
 gi|311281864|gb|EFQ60474.1| GGDEF domain protein [Pseudomonas fluorescens WH6]
          Length = 525

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 210/440 (47%), Gaps = 9/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+      +   A QD LTGI NRQ F   L   L     ++     +  +D+D ++ 
Sbjct: 81  VRERGVLETTLQRLAEQDPLTGIANRQGFQTLLAARLA---ENEGRGLALGHLDLDNFRH 137

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L+  D LARL  + F +++ +     +    A  + 
Sbjct: 138 ANDALGHQAGDRLILQVVSRLKSQLEAGDQLARLGSDEFALLIDTRRAPQRAEWMAERIT 197

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 198 EVMAEPYWVDGESLLIGCSLGVAHARARA-GADPLMWHAHIAMQQAKSTQGCTFHIFNER 256

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 257 INRNARSLADLESELRRALRRDELELHYQPRLDLDDGHIVGLEALVRWRHGERGLLPPSE 316

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+   R++   PP+ +  N++ +   D++L   +  
Sbjct: 317 FVPLAEQSGLIVPLGYWVISRALRDMQDLRERGL-PPLHMAXNLSFRQFQDSQLLSTLSR 375

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI++       ++   +E+ VM   +  +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 376 LIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 435

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G    E+   ++ ++I +A N+   ++A+ +     +  L   GCD 
Sbjct: 436 PIALLKIDKSFVGGMEEREENRKLVHAMINLAHNLNLEVVAEGVETPEQLALLRLFGCDQ 495

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q   ++ PL    +++ L 
Sbjct: 496 AQGYLISKPLPLPELVEYLT 515


>gi|307726864|ref|YP_003910077.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307587389|gb|ADN60786.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 644

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 226/459 (49%), Gaps = 11/459 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G +   +    D      + E     A  D+LTG+PNR    + L     L+A+  + 
Sbjct: 185 AAGFLTVALRSNRDTVALLLARETSQRLAHHDSLTGLPNRARINELLLERTALNASQRDK 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ E +   DI+ RL+G+ F +I  + 
Sbjct: 245 LFAVLLIDLDGFKAINDSLGHAAGDQILQEAALRLREAIPATDIVGRLAGDEFVVISEAP 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           + S  +   A ++ K++A P  L E  + + AS+G A +     T  ++L  A+ A+Y  
Sbjct: 305 DPSRDVRLLADSIVKTLARPFALSEALVHIGASVGVALYPEHASTGPQLLICADRALYAV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F      SD    +++ DL  A+     L + Y PI+ L    + G EAL
Sbjct: 365 KRSGKSAYAIFDAEQHVSDESLSLLRSDLEGALRTFGGLRMEYQPIVDLASGVVTGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +S S F+  AE   +I A+  + L +  ++   WRD      + + +N++
Sbjct: 425 IRWTHPTRGELSPSAFIPTAERTGLILALGEWALLQSCKEAAMWRD-----KVPVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      + +++ KT   P R+ +  +E+V++ +   +R  + RLR +GI + LD
Sbjct: 480 PVQLREETFASIVASVLRKTRLPPERLNIEVTETVLLNDDVVTRRNISRLRALGIGIALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  S  +R   A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFTFDELKIDSSFVKESVHRRESAAVVRGIVALAREIGMPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  +  + R GC + Q   +  P+  + I + ++E+ P
Sbjct: 600 TQEQLDFVRRSGCTHAQGFLLGRPVQGSEIAR-IEEKLP 637


>gi|192359035|ref|YP_001983849.1| EAL domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190685200|gb|ACE82878.1| EAL domain protein [Cellvibrio japonicus Ueda107]
          Length = 571

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 213/438 (48%), Gaps = 6/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ + +   A  D LT IPNR  F DRL   ++L+  D     T+M ID++ +K++N
Sbjct: 125 ERKRTEQHLTRLAHYDPLTDIPNRILFGDRLEHAINLAERD-GTSFTLMFIDLNGFKQVN 183

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD ++     R+   L+  D +AR+ G+ F ++L +  N   +A  A  + ++
Sbjct: 184 DNFGHDAGDAIIRICAERLSSCLRRSDSVARMGGDEFTLLLQNIENHTDVAHIAEKVIRT 243

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++ P ++    + V ASIG A +  +   +  +LK+A++AMY AK   G+    F   ++
Sbjct: 244 LSQPADINGHLVVVGASIGIAMYPQAGRDADTLLKHADMAMYRAKQEEGSSYRFFTEVMN 303

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ DL +A++  +  L Y P + +   ++V LEAL++W+ P  G + +SEF+
Sbjct: 304 QDVRRRLRLESDLRIALKKQQFELHYMPRVDVASGKVVALEALLRWNKPGEGLLDASEFI 363

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  +I ++  +++ +   D+   + +     + + I ++ +   D+ L   +  + 
Sbjct: 364 ATAEETGLINSLGYWVIRQACYDLKLLQPRWG-ERLMMAIKLSVRQFRDDNLVREVARIF 422

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P  ++   +E+    N E   L +  L   GI   LD FG   S   +L  +P 
Sbjct: 423 ADNDIQPGDVEFELTETAFAENIELVSLCMRPLSFFGIDFLLDSFGAGNSSFLHLQRLPI 482

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            +VK + S +           ++ ++I +A N+   ++ + +        L  MGCD +Q
Sbjct: 483 SSVKIDASFIAELNRSLTDKRLVAAMITLAHNLGKWVVVEGVESREQRDWLQSMGCDLMQ 542

Query: 937 DSHVASPLGFNSILKLLK 954
            S  + P     +   ++
Sbjct: 543 GSFFSGPRTLVQLQHWVE 560


>gi|87120901|ref|ZP_01076793.1| hypothetical protein MED121_09840 [Marinomonas sp. MED121]
 gi|86163739|gb|EAQ65012.1| hypothetical protein MED121_09840 [Marinomonas sp. MED121]
          Length = 650

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/476 (22%), Positives = 208/476 (43%), Gaps = 13/476 (2%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             +G  + +  +        W  +     S  N    + +    +I  +K     +  ++
Sbjct: 169 NSKGSFKGDV-LCRRQGLEVWYHLEATLSSQDNDK--KILIHQYNIHHRKLQERALEKDS 225

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+ NR+   DRL +       D      +  +D+D +K IND  G   GD VL 
Sbjct: 226 HTDLLTGLLNRRGLFDRLQSY-----RDKKKPFVIFYLDLDGFKMINDSFGHGCGDQVLK 280

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL-EREI 652
           S++ R+   L       R  G+ F      ++  L +   +  +  +++          +
Sbjct: 281 SVSARLSATLFSKGYACRFGGDEFIWTCGLDDLPLPMDVLSEKLLNAVSHTFYGDFGVPM 340

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            V+ASIG+AS+      + E++  A+ AMY AK  G      +R    + ++ +  + ++
Sbjct: 341 DVSASIGYASYPKDGTNTQEIISCADAAMYIAKRTGKRRTVYYRPGMEKENKRLGILAQN 400

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A++N EL L Y PI  +    I   EALI+W     G IS+ E + IAE   +I +I
Sbjct: 401 LAQAIKNRELSLHYQPIYNVETNSIDSYEALIRWQCESLGYISADETIRIAESTGLIHSI 460

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++ +  +D+  +R+      + + INI+   L   +    ++  I +    P  + L
Sbjct: 461 ENWVIRQALQDLKEFRE-GADQTVRMSINISGLHLAQVDFVNSLEEKIIQAGLVPQDVIL 519

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ ++   +     L +L K+G+ +++DDFGT  S L+YL  IP D VK + S +  
Sbjct: 520 ELTETTLLDGIDDEDSNLHQLHKLGVGISIDDFGTGYSSLAYLHKIPADVVKIDKSFVEQ 579

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++ +  I   I  +  ++    + + +  +   + +  +G +  Q    + P   
Sbjct: 580 VSKDKRTI-DYIHRLISSLGKKTLVEGVETQEQKEIVQSLGINLHQGYWFSRPQSL 634


>gi|99078110|ref|YP_611368.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99035248|gb|ABF62106.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 677

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/543 (19%), Positives = 226/543 (41%), Gaps = 45/543 (8%)

Query: 418 VWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           +W        +      I   L    G+  G  R     +H           +       
Sbjct: 162 IWSIHAKGFGKCFWDGAIQEAL--TEGAWQGEARTLSDDLHPETETLSLRAFNV----SG 215

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
               YEFR R             RP S+  G +   +                     +D
Sbjct: 216 ADPTYEFRSRR----------SFRPKSDRAGLLDSGL---------------------RD 244

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+P+R++   ++   +  +         +++ID+D+++ IN + G  +GD V+  L 
Sbjct: 245 ALTGLPSRRAMKTQVEFAIVRAKAA-TAELAIILIDLDRFRDINSIFGDDIGDRVIERLA 303

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +  +++    + R+ G+ F +++   ++   +   A  +  ++   + +      ++A
Sbjct: 304 DAVRSVMRPGITIGRIGGDEFILLIEQASSPEVVLQVAHDIGAALGDEVVVDGLTCRLSA 363

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714
           S+G A +         +++ A +++ HAK +G   +  +   +     + + ++ DL  A
Sbjct: 364 SMGIAQYPKDGSDQRNLMQAAGVSLCHAKAKGRGQICFYSENMEQRSEESLQMEHDLKRA 423

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           + + EL + Y P I L   + +G EAL++W HPK G +    F+ +A +  +  AI+ F+
Sbjct: 424 ISDGELLMFYQPQIDLRTGQCIGAEALLRWQHPKKGLLLPGGFVPLALDTGLTTAIDQFV 483

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
            + + R I +W  +    P  I +N+++  LL  +    +++         +++++   E
Sbjct: 484 TDEVCRQIRAWNTE-GYAPAKISVNMSAMTLLSPDFARDLRSTARHHQVDLTQLEIEVLE 542

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           + +      S   +  LR +G+ L +DDFGT  S L+ L  +P D +K +   +T   E 
Sbjct: 543 TTLFPRMRSSLNTVDDLRTMGVKLAIDDFGTGYSSLAMLKDLPIDRIKLDRRFITSLPEN 602

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK- 951
                I+ +++ M +++  ++IA+ +        L  +GC   Q    + P+      + 
Sbjct: 603 VKDDRIVAAVVAMGRSLGVSVIAEGVETREQRDRLISLGCAEAQGYLFSRPVPAAQFAET 662

Query: 952 LLK 954
            L+
Sbjct: 663 WLR 665


>gi|323493408|ref|ZP_08098530.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
 gi|323312231|gb|EGA65373.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
          Length = 775

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 213/435 (48%), Gaps = 7/435 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A +DNLT + NR +    +   L L     +   +++ ID+D++K IND +G   GD +
Sbjct: 341 QAIKDNLTNLKNRTALSYEVAAQLKLMRKGMSKGFSILFIDLDRFKVINDSMGHLHGDKL 400

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +R+ E  +  D+  R  G+ F I L    +   ++D        ++ P N+  + 
Sbjct: 401 LQQVGKRLTEHCRSNDMSFRFGGDEFVICLPGLTSRSALSDICQRYSGVLSRPYNIDGQS 460

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
             +  SIG +  T  K T + +L+ A+ AMY AK      V  F    F   ++   +++
Sbjct: 461 CHIGTSIGISIVTDPKQTLAGILREADTAMYQAKSSSHEKVVFFHEKMFSQAKLRFTLEQ 520

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   +L LVY PI    ++++VG E+L++W+HPK G +S  EF+ IAEE  MI  
Sbjct: 521 ELTSALALKQLSLVYQPIYHANNDKVVGFESLLRWNHPKLGLVSPQEFIPIAEETGMIIV 580

Query: 770 INLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           I  ++     + +   W  +       I IN+++K      +   +  L+++  +    I
Sbjct: 581 IGDWVANECCKTLNRLWHTRQGNDVPRININVSAKQFESEHIYHTLAKLLNQYDFPADLI 640

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES+++ + E S   L R++ +G+SL LDDFGT  S LS L   P D +K + S +
Sbjct: 641 GIEITESMLLKD-ECSAQQLQRIKALGVSLYLDDFGTGYSSLSVLNDYPVDVLKVDRSFV 699

Query: 889 TGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           + ++II MA  I+  ++A+ +     +  L +  C+Y+Q    + PL 
Sbjct: 700 SRLALGQSNADNLCQAIISMAHTIDLEVVAEGVETPEQLAILRQHHCNYVQGYLKSKPLT 759

Query: 946 FNSILKLLKERFPLV 960
              I ++L  +  L 
Sbjct: 760 VCRIEQVLDSKQQLS 774


>gi|24374042|ref|NP_718085.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24348514|gb|AAN55529.1|AE015691_8 sensory box protein [Shewanella oneidensis MR-1]
          Length = 775

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 122/583 (20%), Positives = 241/583 (41%), Gaps = 26/583 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   ER SL   A+  S  +    ++  ++V         
Sbjct: 198 IHLACQMADQLALTLATKHAYDKEERLSLFRCAIEQSRQMSMLINLHTEKVEYVNQAHED 257

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G+A     G     L +            L       + +   E +    D   +W+ 
Sbjct: 258 ITGIARDKSIGTNLRDLTFF-RQHNALAEQTLAKIFRGDQAK--GEVQFSRTDGSRYWLK 314

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + +++      +   A++  LTG+ NR  F   L     
Sbjct: 315 YIVSQFITDRGNHYALVSGEEN-SDEHNYKAELERLAWRCGLTGLNNRSHFNRVLER--- 370

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                      ++++D+  +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 371 ------TTHGLLLLVDLVAFKRFNDTYGHENGDSLLIEVGRRLKHFSEINKATEIARVGS 424

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + +AMPI +   ++    ++      +S       L
Sbjct: 425 DEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKPALAVVDI-ASVANLFAPL 483

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 484 TCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 543

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +  +G EALI+W HPK G +    F+ IAE+  MI AI  ++LE   R +  W+      
Sbjct: 544 QTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNAD- 602

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   + LL   L 
Sbjct: 603 -LSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELA 661

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 662 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTISRESQEIVSAIIAMANALN 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ A+ +        L +  C   Q    +  L      + L
Sbjct: 722 ISLTAEGVETAEQEAFLAKSLCHQAQGFLYSPALREPEFAQFL 764


>gi|254503343|ref|ZP_05115494.1| hypothetical protein SADFL11_3382 [Labrenzia alexandrii DFL-11]
 gi|222439414|gb|EEE46093.1| hypothetical protein SADFL11_3382 [Labrenzia alexandrii DFL-11]
          Length = 1037

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/559 (20%), Positives = 229/559 (40%), Gaps = 24/559 (4%)

Query: 410  AVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +  S + ++  +    +V        T L      +               R      L
Sbjct: 481  ILETSLNEIYVLNADTYKVEYANACAITNLDYTLTELQN--LTLWDINQEFSRSTIAEKL 538

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ------ 522
                      +  E + R  D   + +  +I+ + +  G   R + +ANDI+++      
Sbjct: 539  VPLAEGTEANITGEAQQRRKDGTDYPVDFQIQMVRD-QGR-NRIVAMANDISDRVQRESE 596

Query: 523  -KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             + + E     A+ D LT + NR             +         ++ +D+D +K++ND
Sbjct: 597  TRDAKERAERLAYFDPLTKLSNRAGCQRDAGKRFAKTEK----PAFLIHVDMDNFKRVND 652

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             LG   GD  L    RR+ E+ +      R  G+ F I+  S ++     +     R+ +
Sbjct: 653  TLGHLAGDYCLAETGRRLREVSRGLGTPYRWGGDEFVILANSSDS--DPNELCERARRLM 710

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              P+         T S+G A           +L NA+LA+Y +KH G +    +      
Sbjct: 711  RAPMEFNGTTFWPTVSMGIALCPDHGTNFETLLVNADLALYRSKHSGKDRFTFYSSDLQS 770

Query: 702  SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                   ++ +L +A +  E +LV+ P + +   ++VG+EAL++W HP+ G +S  EF+ 
Sbjct: 771  VSDKETELERELHMAAQRDEFFLVFQPQVNMRTHKVVGVEALVRWQHPERGVVSPGEFLP 830

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            + E+      +   +L++      SW+D        I +N++   L    L E  +  + 
Sbjct: 831  VVEKTGFAAVLGEIVLDKAFAAAKSWQDAGLDFG-RISVNVSPAHLSSGMLFEQFKTAME 889

Query: 820  KTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P RI     ESV + + +      L  L ++G+ + LDDFGT  + L+++  +P 
Sbjct: 890  RHDLAPERITAEVLESVFLDDHKSGHLSTLKDLYEMGVHVELDDFGTGYASLTHVVDLPI 949

Query: 879  DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            + +K + S        +++  ++  +I +A+++  +++ + +  E     L  MG   +Q
Sbjct: 950  NGLKIDRSFTQQMLEDDRKEILINQLIHLARSLNISVVCEGVETEEQYDRLRMMGDFAVQ 1009

Query: 937  DSHVASPLGFNSILKLLKE 955
               +A PL F      + E
Sbjct: 1010 GFLIARPLRFEDATNWMSE 1028



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 6/198 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
             +  A    F   + + +      +   ++   L   L  +   IG T      A    
Sbjct: 286 RDVTTAATAFFKTTLVVLLVSLGFAILAWVLMQRL---LARLQRRIGRTWSSLEEAVSSN 342

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPY 455
           ++ +     +   A   +    W+ D+    ++ + +   I G++  +  G +    +  
Sbjct: 343 TKELERSRAQLLEAQAIASIGSWECDVSTKEISASEEFFRITGISPTTASGNLLEQLIER 402

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   D    ++++   +   +     E  +  AD     +  + R     NG  +R IG 
Sbjct: 403 VPATDLPRVKSVVHHALAQCQ-PFDLEHSILRADGSLARIHTKGRVFKGENGRSVRGIGT 461

Query: 516 ANDITEQKKSLEGILCNA 533
            +DITE+  +       A
Sbjct: 462 VHDITERSNTERQNRLMA 479


>gi|159186187|ref|NP_356167.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159141321|gb|AAK88952.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 734

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 119/522 (22%), Positives = 232/522 (44%), Gaps = 23/522 (4%)

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           GL      GP  N +  ++   +   R +  S +       +              ++  
Sbjct: 221 GLELQYGDGPAANHVDIVNPLGQVLARLVWRSHLPGDVSFHEA-----------RPVVFT 269

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              ++ +   +L  IG A  +   K         A +D L+G+ NR      LT ++  +
Sbjct: 270 ALGIAGTFFLVLLIIGSAT-LDRLKADEAAAREEALRDRLSGLDNRAGLFAHLTRMVGKA 328

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              D     ++ +D+D +K+IND  G A GD ++  +   +  L+    +LARL G+ F 
Sbjct: 329 -RHDKTDIKLLYLDLDGFKEINDSYGHAAGDRLIKGVAAALRVLVPEDAVLARLGGDEFA 387

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I +   +   +     +A+ +    P ++ ER  ++  SIG +   +  I   E+L+ A+
Sbjct: 388 IAIQGNDVWSEGRKLCLALLELFTEPFSIGERVASIGCSIGTSVSRAGDINGEELLRRAD 447

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G     S+ +     R +++ ++ DL  A+ N E+ +VY P++      I 
Sbjct: 448 MAMYQAKENGRGRYVSYELKMDALREEKLQLEADLRSAILNDEIQVVYQPVVSAATRCIT 507

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL +W  P +G +    F+  AE   +I  + L +L +       W      P I +
Sbjct: 508 GVEALARWQRPGYGFVPPDIFIAAAETSGLIDRLGLLVLRKACETARQW------PSIKL 561

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+     +      +  ++  T     R++L  +E   + +PER+   + +L+++G+
Sbjct: 562 SVNISPVQFRNPAFSGHVADILDVTQTPSERLRLEMTEGYFIQHPERASAAIDKLKQLGL 621

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTII 914
            + LDDFG   + + YL    FD +K + SL+    +   +  +L++ + +AK+++  + 
Sbjct: 622 HIALDDFGAGFASVGYLRRFGFDRMKIDRSLIMALDKGGRSLEMLQATVALAKSLDIPVT 681

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  E     L   GCD +Q    + P+    I  +L  +
Sbjct: 682 AEGVETEEQAAILHLCGCDELQGYLFSKPVAAEDITTMLDGQ 723


>gi|327190969|gb|EGE58023.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 614

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/587 (22%), Positives = 250/587 (42%), Gaps = 42/587 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--P 454
            Q       R  LA+  S   VW+  I +D +     +  +   A+G     +  W    
Sbjct: 28  EQEFQDLLRRLELALDASRIGVWEHSIAKDGILWDAQMHRL--YATGETCRQVPAWFWSD 85

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH +DR+      +  +  R G    +FR+     +   +  R     ++ G    +IG
Sbjct: 86  AIHPDDRERAERDFEQAIAAR-GAYDSQFRIVLPSGEIRHLRSRAHFYVDAEGAPS-FIG 143

Query: 515 IANDITE---------QKKSLEGILCNAF------------QDNLTGIPNRQSFLDRLTT 553
              D+T          ++K +      A              D LTG+PNR+    RL  
Sbjct: 144 AEWDVTADVQLNAELARQKMMAEARALALEESNARIEHVADHDYLTGLPNRRLLDKRLAE 203

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +    A        V+ +DID++K+IND  G A GD VL +   RI   +    ++AR+ 
Sbjct: 204 L---PADRSVATLGVLHLDIDQFKQINDSHGHAAGDAVLKAAALRIAAAIPANGMVARVG 260

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L++  +  ++      +++ +   I      +   ASIG +        +  +
Sbjct: 261 GDEFVVVLVNFTDLAELKRITEDVQRRLRKKIRFGHEMLQSGASIGVSWS--GDRRARNL 318

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L  ++LA+Y AK  G N +E F          +  + E+L L +E  E+   Y   +   
Sbjct: 319 LAESDLALYQAKQLGRNRIEFFTRQLQEDLRAKRRLVEELKLGLERGEIIPYYQVQLCAT 378

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +++G EAL +W HP+ G ++   F+ IA+E  +   I+  +L+R+  D   W+     
Sbjct: 379 TRQVIGFEALARWKHPEKGVLAPGVFLKIADEHGLAAEIDAAILKRVLEDRQIWQLLGLA 438

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGR 850
            P  I +NI++  L D  L       + K    P  I     E++ + + +      +  
Sbjct: 439 VP-RIAVNISASRLADPALLGK----LKKLDIPPGAIVFELVETIFLDDSDETLLDHIDD 493

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKN 908
           ++++GI + +DDFG+  + L  L  +    +K +  L+    S++++  ++ SI+ +AK 
Sbjct: 494 IKQLGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLVAEVVSSDEQRRVVGSIVEIAKA 553

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  +IA+ I  E     L ++GCD +Q      P+      +L   
Sbjct: 554 LDVEVIAEGIETEAHATVLAQLGCDGLQGYAFGYPMPAIETDRLFSS 600


>gi|104784308|ref|YP_610806.1| diguanylate cyclase [Pseudomonas entomophila L48]
 gi|95113295|emb|CAK18023.1| putative diguanylate cyclase (GGDEF domain) [Pseudomonas
           entomophila L48]
          Length = 555

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 219/441 (49%), Gaps = 9/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   LT  L     +D     +  +D+D ++ 
Sbjct: 110 VRERGVLVATLQRLAEQDPLTGIANRQGFQALLTARLA---ENDGRGLALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L   D LARL  + F +++ +  +  +    A  + 
Sbjct: 167 VNDALGHQGGDRLILQVVARLKAQLAAGDQLARLGSDEFALLIDTRRDPNRAEWMAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++  P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALTEPYWIDGESLLLGCSLGIAHARAQA-GADPLMWHAHIAMRQAKGSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W+HP+ G ++ SE
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRLNLTDGRIVGLEALVRWNHPERGLLAPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R   D+ + R++    P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALSDMQALRERGLA-PLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LIVEHGVDARWLEFELTETAVMRRNELVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S + G    E+   ++ ++I +A N+   ++A+ +  E  +  L   GCD 
Sbjct: 465 PITLLKVDRSFVGGMEQREENRKLVHAMINLAHNLNLEVVAEGVESEEQMALLRAFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   V+ PL   ++++ L +
Sbjct: 525 VQGFLVSRPLPVAALIEYLSQ 545


>gi|307941686|ref|ZP_07657041.1| pas domain protein [Roseibium sp. TrichSKD4]
 gi|307775294|gb|EFO34500.1| pas domain protein [Roseibium sp. TrichSKD4]
          Length = 1070

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/563 (21%), Positives = 241/563 (42%), Gaps = 24/563 (4%)

Query: 407  QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNF 464
             +  +  S + V+  D    +           LG +   +       +  I      + F
Sbjct: 509  LADILEASMNEVYLIDARTLNIEYANSCGRENLGYSMAELFDCT---VRDISPGMTIEQF 565

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-- 522
             +++      ++  L++E      D   + + +R +     N D+  Y+ IA D+TE+  
Sbjct: 566  NSLVSPLREGKQSYLKHEGHQLRKDGSSYPVEVRFQKYLEHNRDL--YVAIAIDVTERAA 623

Query: 523  -----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
                 + + +     A+ D LTG+ NR          +    T+ N    ++ +D+D +K
Sbjct: 624  REQEIRDARDEAERIAYFDALTGLANRACCQR--EAAIRFDKTNQNKPAFLIHLDLDNFK 681

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +IND LG   GD  L    RR+ +         R  G+ F II  S  ++   A      
Sbjct: 682  RINDTLGHLAGDLCLEEAGRRLRDCCGEDATAYRWGGDEFVIIASS--SAADPAVLCNRA 739

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++ +P+     +I  + S+G A   +   T   +L +A+LA+YH+K +G +    F  
Sbjct: 740  TSAMRIPMEFEGNQIWPSTSMGVACCPADGETFESLLVHADLALYHSKEKGKDRWSYFAE 799

Query: 698  SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                        +++L  A+ N E +LV+ P + +    + G+EAL++W HP  G ++  
Sbjct: 800  DMKLDSDAEAETEKELRRAIANDEFFLVFQPQVNIRTRNVTGVEALVRWRHPTKGVLAPG 859

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+ + E+  +   +   +L++  +   +W D        I +NI+   L+   L    +
Sbjct: 860  AFLSVVEKTNLASQLGRVVLDKALQAARNWTDIGFRFG-QISVNISPTHLVSGNLLADFE 918

Query: 816  ALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +I      PS I     ESV   +    S  +L +L ++G+ + LDDFGT  + LS++ 
Sbjct: 919  EMIDTYNLPPSLITAEVLESVFFDDKKSDSTDVLEQLHQLGVQIELDDFGTGYASLSHVA 978

Query: 875  YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P + +K + +         K+  ++  +I +A+ ++  +I + +  +   + L  MG 
Sbjct: 979  DLPINGLKIDRTFTAKLLSDHKKEIVINQLIHLARALDIGVICEGLETDAQFERLRMMGN 1038

Query: 933  DYIQDSHVASPLGFNSILKLLKE 955
              +Q   +A P+ F ++   L+ 
Sbjct: 1039 FSVQGYLIARPMEFENMTSWLEA 1061



 Score = 77.3 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 11/189 (5%)

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER 406
                IG  +A    L  + +  AL         L+  T  +        +  + +   R
Sbjct: 331 ALSLGIGFALAFGFWLIFNRLIHALQ-------RLVLSTRQRLEKEVQENTAELEASRNR 383

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR--NWLPYIHINDRDNF 464
              A   +    W+ D++   V  + ++  I GL    + G          +        
Sbjct: 384 LQQAQKVASIGSWEMDLITKEVHWSEEMYNIAGLDP-ELDGNAAQNQLFSLLPSETLRLI 442

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              L       +G   +E  +         + +R    ++   D  +    ++DIT+   
Sbjct: 443 ENSLKEAAEKSQG-FDFEHEIIRPGGSTRHIHVRGNIQTDEFSDAAKVFATSHDITDWHL 501

Query: 525 SLEGILCNA 533
           + +  L  A
Sbjct: 502 AQQQSLLLA 510


>gi|88797655|ref|ZP_01113244.1| putative phosphodiesterase [Reinekea sp. MED297]
 gi|88779827|gb|EAR11013.1| putative phosphodiesterase [Reinekea sp. MED297]
          Length = 975

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 219/434 (50%), Gaps = 12/434 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A  D+LTG+ NR      +   L +         ++++ D++++K+IND  G 
Sbjct: 548 RENLRRQAMYDSLTGLGNRSQLHAWIKVALPVKER-----ASLLLFDLNRFKEINDSFGH 602

Query: 586 AVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             GD +L  +  RI   L   +  L+RL G+ F + L    ++   ++ A  + K++A  
Sbjct: 603 QFGDRLLCEIGPRISSTLGDREHYLSRLGGDEFALFLPD-TDTETSSELAGKLHKALAKS 661

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSD 703
             +      V ASIG A +        E+L+ A++AMY AKH   + V    ++ +    
Sbjct: 662 YTIDGLRFQVEASIGVAQFPQHGDDGHELLRCADVAMYAAKHTNRSVVLFDPQLDNSTPM 721

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +   L  A+   +L + Y P+++    ++ G EAL++W HP++G +S SEF+ +AE 
Sbjct: 722 RIAVLSGLDQAIAEHQLSVAYQPLMQTSTGQVAGFEALVRWSHPEFGELSPSEFIPLAEV 781

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I+ I  F+L      ++ WR     P + + +NI+ + LLD++    +QAL+     
Sbjct: 782 GEGIRKITDFVLRSTLEYLVVWRRLL--PQMHVAVNISPRVLLDHDFPNRVQALLEAYNL 839

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + +  +ES ++ +P R+  ++  L  +G+ + +DDFGT  S LSYL  +P   +K 
Sbjct: 840 PGESVVMELTESTLLVDPVRAVEIIHSLSALGVKVEIDDFGTGYSSLSYLKRLPLSALKI 899

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +   +       I++S + MA N+   ++A+ +  E  + ++ R+GCD IQ  + +
Sbjct: 900 DRSFVADISSDSHNEVIVQSTVQMAHNLGLQVVAEGVEDEATLLKMMRLGCDMIQGYYFS 959

Query: 942 SPLGFNSILKLLKE 955
            P+  + + + LK 
Sbjct: 960 KPIPGDEVEEWLKR 973



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 78/263 (29%), Gaps = 23/263 (8%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDNFRTILDSFVGYRRG 477
           + D     +   P +   LG+    + G       + +IH +D     T  D      R 
Sbjct: 130 ELDGRWVLIQANPALGDFLGVDPAELEGRGARKVMIDFIHPDDVRMLMTSYDMTRTTSR- 188

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
           ++  ++R+ AAD  ++ +  R   +  S+    R I       E  +         F D 
Sbjct: 189 QMTLQYRLLAADGVYYPVTER--VLYISDDPPRRCISTIW-HRELDQMDSQTQYQLFHDI 245

Query: 538 LT-----GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            T      + + + FL      L+               D+D    I    G       L
Sbjct: 246 QTTTADLSLLSGREFLHHFCRRLEALD------------DVDSLALIAHTRGDWWESWAL 293

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                ++ +     +   RL    + +  +   +          M     +P+      +
Sbjct: 294 YRRASQLPDFHIQLNHGHRLDEAAWNLTSLFGRDDDASQALYDQMPYQSVLPLKHDGESV 353

Query: 653 TVTASIGFASWTSSKITSSEMLK 675
                +G     S+     ++++
Sbjct: 354 VACLILGSVKPLSNSDQVVQLVR 376


>gi|330953889|gb|EGH54149.1| sensory box/GGDEF family protein [Pseudomonas syringae Cit 7]
          Length = 438

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 108/432 (25%), Positives = 189/432 (43%), Gaps = 11/432 (2%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+ NR +   R+            L   +++ID+D +K +ND LG A GD 
Sbjct: 4   HAAEYDHLTGLANRSTLKRRIKEAC-----GAQLSAAILLIDLDGFKDVNDTLGHAAGDF 58

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL   + R+ E +    ++ARL G+ F + L    +        + +   I  PI   + 
Sbjct: 59  VLQVTSLRLRENVPASHMVARLGGDEFVVFLSDTADPDNATRLGLELIAVIEEPIEFEDN 118

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            I + ASIG +  +       +ML NA+LA+Y AK  G + V +F     ++      + 
Sbjct: 119 SIYIGASIGVSVRSGCDYDEEQMLGNADLALYQAKSDGRSLVRTFTSEHRQTASRRGALS 178

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A  N E  L Y P +RL D  I G EALI+W+HP  G +S + F+   E   +  
Sbjct: 179 SSMRQAWANKEFELYYQPQVRLADSRITGAEALIRWNHPTLGVVSPAVFLPALEAGLLAV 238

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++L         WR+        I +N+ +      +  E +++ +         +
Sbjct: 239 PVGEWILRSACEQAAQWRNTGCDE-FRIGVNLFAAQFRMRDFAEMVESALEDFSLPAHAL 297

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E++++ N +R    L  LR +G+ +  DDFGT  + LS L   P   +K + S +
Sbjct: 298 ELEITENIILRNEQRIMEPLRHLRSLGVGIAFDDFGTGYASLSLLKDYPVTRLKIDRSFV 357

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +G   ++K   I+ ++I +A      + A+ I        +    CD  Q      P+  
Sbjct: 358 SGVERSKKDEVIIEAVIRLANGFNLQVTAEGIETREQESLMRHYVCDEGQGYLYGRPMPA 417

Query: 947 NSI-LKLLKERF 957
           +    + +    
Sbjct: 418 HEFTERYVSSHN 429


>gi|21113699|gb|AAM41808.1| phosphodiesterase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573238|gb|AAY48648.1| phosphodiesterase [Xanthomonas campestris pv. campestris str. 8004]
          Length = 757

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 211/435 (48%), Gaps = 7/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L++L  ++D +         V+++D++++K++ND LG 
Sbjct: 315 EQHILHQARHDALTGLPNRIWLLEQLQQVVDQTVASGGT-AAVLILDLERFKELNDSLGH 373

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ ++++ P+I+ RL  + F +++    +   + + A  +   +  P+
Sbjct: 374 DFADQVLVEAGRRLADVVQAPNIVGRLGSDEFMVVVAH-ADPATVQEEAQRLLLQLRSPL 432

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDR 704
            L +  I + ASIG A           +L+ A++A         G  V           R
Sbjct: 433 ALPQARIQLEASIGIALIPEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRR 492

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  DL  A+  +EL L + P I L  +++  +E L++W HP  G I   EF+ +AE  
Sbjct: 493 LRLTGDLRQAIGGNELTLRFQPKISLRTDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEHS 552

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  F+L+        WR Q       + IN+++ DL D  L + ++  + +    
Sbjct: 553 GVIHPLTRFVLDEALHCQSQWRAQGLELG--MAINLSALDLSDPGLPDFVRGCLQRHAVP 610

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K +
Sbjct: 611 ATSVTLELTESALMRDVEFALHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKID 670

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    E      I+RS I +  N+  ++IA+ +  +  +  L   GCD +Q    + 
Sbjct: 671 KSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSP 730

Query: 943 PLGFNSILKLLKERF 957
           PL    +L     + 
Sbjct: 731 PLEEKPLLAWCMRQL 745


>gi|304410776|ref|ZP_07392393.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|304350673|gb|EFM15074.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
          Length = 859

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 120/578 (20%), Positives = 230/578 (39%), Gaps = 23/578 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER  + +    + V   D+    +   P   ++L     S +   
Sbjct: 293 ASRVNSLLARIYQQKERAKITLESIAEAVILTDVDAKVIYMNPRAESLL--DVASCYALD 350

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           ++    +   D+ N + +              + ++  A      M   I  + N +  I
Sbjct: 351 QSLASLLKAGDQLN-QAVFTCIRLGESSPQVEKIKLLTA--TPRIMERSISNLRNHDKVI 407

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DIT+++     +   A  D++TG+ NRQ+F ++L      + T       V 
Sbjct: 408 VGTVVVLRDITQEELLKRQLQKRANFDSITGLLNRQAFDEQLPQFAASAKT-----IAVC 462

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +L  + + +   L   ++LARL G+ FG+++ + +    
Sbjct: 463 YLDLEQFKLINDSCGHTAGDRMLAMVAKAMQACLGPQELLARLGGDEFGLVICNRSALSV 522

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     +N       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 523 AQLLKQMIAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYIDAQELLKDADIACIAAKAKGA 582

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI  L    +   +E L++ 
Sbjct: 583 NQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGSGPQRQRMEILLRI 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +         P   I IN++   
Sbjct: 643 QEPCGRILAPAQFIAAAERFKLMPDIDKEVIRKAFLWLSLHP--VLWPDHCISINLSGNS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             I    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 701 LGAEGMVEYIAQQQHIFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 761 SGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 820

Query: 923 DIKELTRMGCDYIQDSHVASPLGF----NSILKLLKER 956
            I  L  +G +Y Q   +  P             L +R
Sbjct: 821 IIDRLLSIGINYAQGYAIGRPQPLANYREQYEMRLAQR 858


>gi|218710780|ref|YP_002418401.1| hypothetical protein VS_2863 [Vibrio splendidus LGP32]
 gi|218323799|emb|CAV20156.1| Hypothetical protein VS_2863 [Vibrio splendidus LGP32]
          Length = 828

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 210/441 (47%), Gaps = 6/441 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D  +   +   +   A  D LTG+ NR  F   +   L  + +DD+ +  V  ID+D
Sbjct: 375 IQSDFEKLCTANSTLNHFANHDQLTGLFNRHFFEVYMEKELAKTQSDDD-KFLVCFIDVD 433

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND  G +VGD++L+ +++ + ++      + R  G+ F +   + N+  +     
Sbjct: 434 NFKNINDYYGHSVGDELLIQISQTLKKVCPNFSEVFRFGGDEFIVTFPALNSLKQAESVM 493

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
                 +A      E E  ++ S+G A +     T  E+L ++++ ++  K  G  +   
Sbjct: 494 KLFHDELATKYQCFEHEFDISFSLGAALYPDHGRTVDELLASSDIMLHSVKSEGKANCAI 553

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F   +   ++    I+++L  A+E  E+YL Y P   L    + G+EAL +W  P  GN+
Sbjct: 554 FSSKTSAKNQRKFLIEDNLLTAIERREIYLDYQPQYCLQSGRLWGIEALARWKSPTLGNV 613

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+ +AE    I+A+  +++E   +      D  +  PI + +N++   + +    E
Sbjct: 614 YPDEFISVAEVSGHIRALGWYLIELAYQQYSEL-DFPDDAPILLALNLSPVQIGETNFAE 672

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  +  +   +PS I L  +E +++ NPE    +  +LR  G  L LDDFGT  S L Y
Sbjct: 673 NIIKITERYGINPSHICLEATEGIMLKNPEEVAKVAYQLRSKGFHLALDDFGTGYSSLKY 732

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S +   +E   A  +L+SI+ + ++  T  +A+ +     ++ + + 
Sbjct: 733 LSLLPIHEIKIDRSFIWQLSESNTAHELLKSIVAIGRSTGTRTVAEGVETIEQLEYVKQY 792

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           GCD +Q    + P+     ++
Sbjct: 793 GCDIVQGYLFSKPVSLEKAVQ 813


>gi|152981002|ref|YP_001353865.1| signal transduction protein [Janthinobacterium sp. Marseille]
 gi|151281079|gb|ABR89489.1| signal transduction protein [Janthinobacterium sp. Marseille]
          Length = 745

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/558 (22%), Positives = 228/558 (40%), Gaps = 49/558 (8%)

Query: 433 DIATILGLASGSM----------------HGPIRNWLPYI-HI----NDRDNFRTILDSF 471
            I+ +LG+    +                      +   I H      D       L   
Sbjct: 202 QISRLLGVPPDGLFCVQEQLHNQENALFVVAAAGRFGDLINHPLSSIEDLS-IDRTLTRA 260

Query: 472 VGYRRGRLQYEFRVRAADNQ----FHWMIIRIRPMSNSNGDILRYIGI-----ANDITEQ 522
           +  RR     EF            F       RP++     +L           ++IT  
Sbjct: 261 LKERRNIHGREFSALHFTGNASSNFAAFFRTGRPLTEIELRLLEVFCSNISVGLSNIT-- 318

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
              +  +  +AF D+LT +PNR    + +   L  S    +   T+ +IDID + + ND 
Sbjct: 319 --LVTRLHNSAFYDSLTKLPNRTRLKEIIDDSLSSSKELPS---TLALIDIDHFAETNDT 373

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L+S+  R+   L    I+AR+ G+ FG++      +         +     
Sbjct: 374 LGHQFGDLLLLSVATRLQSRLGDRLIVARVGGDTFGVLGDDSQVNPAA------VLAQFE 427

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
            P ++  +++ ++A++G    +  +    E LKNA +A+  AK +       F  +    
Sbjct: 428 RPFSIDGQDVQLSATVGLVRLSEHEGRGVEALKNAHIALKRAKLQQRTGHLYFSRNMGID 487

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +RV +   L  A E   L +VY P I ++  + VG EAL++W       IS + F+ I
Sbjct: 488 IRERVNMMHALRTAFEERRLTVVYQPQIDMVTRQPVGAEALLRWTTEDGSMISPNRFIPI 547

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  +  ++L +  ++++  +         + +N++            ++  +  
Sbjct: 548 AEYSGLIIELGEWVLRQACQELVRIQS-LGFADFMVSVNVSQVQFRHPHFLSMLRKALHD 606

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T      ++L  +ES+ M  P+    LL ++   G+S+ +DDFGT  S LS+L  +  D 
Sbjct: 607 TNAPAHCVELEITESMAMEEPDALIKLLDQITATGVSIAIDDFGTGFSSLSHLQKLSVDR 666

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +T  T+     +I   II + +N+E  +IA+ +  E     LT +GC   Q  
Sbjct: 667 LKIDRAFVTEITDSSRGSSIAEMIIQLGRNLELDVIAEGVEDERQAAILTELGCPLGQGY 726

Query: 939 HVASPLGFNSILKLLKER 956
             A P+   ++   L   
Sbjct: 727 LFAKPMSAEALHSWLGTH 744


>gi|150019247|ref|YP_001311501.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905712|gb|ABR36545.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 476

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/444 (28%), Positives = 230/444 (51%), Gaps = 8/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI ++K S       +  D LTG+PN   F ++L   L++S  +   +  ++ IDID Y
Sbjct: 29  KDIHKRKNSKLNKEF-SKHDILTGLPNSSYFFEKLNRSLEISKVNCR-KGAIIYIDIDDY 86

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IN   G + GD +L   + R+   ++    L RL+G+ F I++       +I +    
Sbjct: 87  KIINYNWGYSFGDFILKCFSERVSRCIQGKGKLFRLNGDEFAILIYEFKFISEIEEICNK 146

Query: 637 MRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           + K++++P  +   E +I+V+ S+G +++    I S E+L+   LAMY +K  G N+   
Sbjct: 147 IYKNLSVPFKITDAELDISVSISMGISTFPDDSINSDELLEFCNLAMYKSKRTGKNNYTL 206

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    F        I+ +L  A+   EL + Y P I L   EIVG+EAL++W++ K GN+
Sbjct: 207 FTTEIFEKYYREALIRSELKNAINKHELNINYQPQIDLSTNEIVGIEALLRWNNDKIGNV 266

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ IAEE   I  I  +++E+       W+         I INI+   + + +  +
Sbjct: 267 SPAEFIPIAEESGDIVQIGDWIMEKSIEQASLWKCMGYKFN-NIAINISPIQIKEKDFKD 325

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +    +K   SP+ +++  +ES ++   E++  +L  L+ +GI++ +DDFGT  S LSY
Sbjct: 326 KLLKCCNKYNISPNFLEIEITESTLLDISEKNIEVLNELKGMGINIAIDDFGTGYSSLSY 385

Query: 873 LGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L  I   T+K + + +      K + ++++I+ ++K+++  +I + +     I+ L  +G
Sbjct: 386 LINISVSTLKIDKTFVDHVENYKNMVLIKNIVNLSKDLKYKVIVEGVETREQIEVLADLG 445

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C  IQ  + + PL  + +  LL  
Sbjct: 446 CKIIQGFYFSKPLTEDGMKTLLDS 469


>gi|296532357|ref|ZP_06895091.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296267316|gb|EFH13207.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 771

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 137/749 (18%), Positives = 269/749 (35%), Gaps = 44/749 (5%)

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
           +++     +  +      V          L   +    G LL+  A   +AL+ +   + 
Sbjct: 49  WLLLGGLAVGASIWCTHFVAMLGYAPGFGLGFRLLPTLGSLLLAVASGTVALAVAARPWA 108

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
                         +              +  + P++  +   + +A   L         
Sbjct: 109 LAAPLGGALFGLGTWAMHLLGLSAYGDAGVLRFSPVLLGASLLLGMALGALALMSKRARP 168

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRL-DNDIIQPALVGGLVLIVILIGFTVIQ 388
           G  G+    +++ A +L         + +            A +G  VL V L+ F    
Sbjct: 169 GPAGWLGGGVVLAASVLSLHITGMAAIELLPLPRQEPASAEASLGLAVLSVALMVFAAAL 228

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             L     ++      +R       + + +         V        + G    ++ G 
Sbjct: 229 AALLIDRRAEE--EGEQRLRRLADAAMEGLAVVQ-GGRIVEANHSFQALCGRPRAALLGQ 285

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                              L         R      +R AD +   +      +     +
Sbjct: 286 P--------------LPGQLLEAGEADGSRW-----LRHADGRRIEV---AVQLREGLPE 323

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
               + +  D+  Q+     +   A  D LTG+PNR  FL+ L   L  +         V
Sbjct: 324 PGFRVFVLRDLRPQRAQEARLDHMARHDALTGLPNRAGFLELLEQALAEARGRQG--LAV 381

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + + ++  K +N + G A GD VL +  R           LARL  + F  +L    +  
Sbjct: 382 LRLGLNGLKSVNGLHGHAAGDAVLRAYARA-LAARLPEARLARLGSDEFAALLPY-RDEA 439

Query: 629 KIADFAIAMRKSIAMP----INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            + +    +  ++A+P             V+A+IG A +      +  ++  A++A+  A
Sbjct: 440 ALQERLPRI-AALAVPAGGGDGTGTGTGEVSATIGAALYPGDAGEAETLMAYADIALQRA 498

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K   G           +    R  + +DL  A+   + +LV+ P + L    + G EAL+
Sbjct: 499 KALPGRPPCFHDAAQDARLQQRRRLAQDLAGALAEGQFFLVFQPQVVLASGRLCGHEALL 558

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +    F+ +AEE  +I+ +  + L +      + +         + +N++ 
Sbjct: 559 RWRHPQLGLVPPDHFIPLAEESGLIRPLGAWTLRQACAAAAAEKRLG-----KVAVNLSP 613

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               D  L   + A +++T   P R++L  +ES +M    ++  +L +L+ +GI + +DD
Sbjct: 614 LQFRDEALPALVAATLAETGLPPGRLELEITESAMMQEMAQALEMLRQLQSLGIGIAMDD 673

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L  L   PF  +K + S M     +   +AILR+++ M + +   ++A+ +  
Sbjct: 674 FGTGYSSLGTLRAFPFHKIKLDRSFMREIGESPAALAILRAVLDMGQGLGVPVLAEGVET 733

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E     L   GC   Q      PL  + +
Sbjct: 734 EAQRDRLREEGCAEAQGYLFGRPLPLDEL 762


>gi|308188100|ref|YP_003932231.1| hypothetical protein Pvag_2622 [Pantoea vagans C9-1]
 gi|308058610|gb|ADO10782.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 693

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 212/437 (48%), Gaps = 8/437 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T   ++ + +   A  DNLT +PNR     +L   +  +  +++ R  V+ +D+D +K +
Sbjct: 247 TRLNRANQELRQLAMHDNLTALPNRVMLEQQLDLAIKQATLNED-RFAVIYMDLDGFKAV 305

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD +LV++  R+   L    +L RL G+ F  +L++E +       A  + K
Sbjct: 306 NDTWGHHVGDRLLVAVAERLRSQLSNTMLLVRLGGDEF--VLMAECDISPARQLAQKLVK 363

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I  P  L    + V+ S G A +     +  E+L NA+ AMYH KH G N    F  + 
Sbjct: 364 VIGSPFELDRYVLHVSLSAGIAIFPLHGRSRQELLFNADAAMYHTKHSGRNGWCLFEPTM 423

Query: 700 FRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             + +  ++   DL  A++  ++ L Y P  R     ++G EAL++W HP+ G ++   F
Sbjct: 424 SAATQHQLELANDLWEAIDRQQMRLFYQPKFRSGGTRLMGFEALLRWQHPQRGLLTPELF 483

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+   I A+  +++E   R +  W  Q +     + +N+++      +L   +   
Sbjct: 484 LPRAEKTGQIVALGNWVIEEACRQLRIWHSQGHG-DWTVSVNLSALQFHQRDLLSTLNET 542

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++   S S + L  +E++ M +P  S+  +  L++ G+S+ +D+FG   + L +L ++ 
Sbjct: 543 LARYQLSGSALMLEITETIAMRDPVFSQQRIRELQQAGVSVAIDNFGIGYANLLHLKHLD 602

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +       +   ++ +++ +A+++   ++A+ +  E     LT +G D +
Sbjct: 603 ASELKIDRSFINCLRPGSEDATVVSAMLTLAQSLNLRMVAEGVETEEQQHLLTSLGFDAL 662

Query: 936 QDSHVASPLGFNSILKL 952
           Q   +  P   + +   
Sbjct: 663 QGYLLGKPTPPDRVDAF 679


>gi|308126567|ref|ZP_07663820.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308109607|gb|EFO47147.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 942

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 224/580 (38%), Gaps = 17/580 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               + + +       ++               ++   D              +LG    
Sbjct: 371 LFEARDITSRKLMEDKLYQRESSLRNYYEQQPVMMVTLDSHNRIQEVNRFAQLLLGYEPI 430

Query: 444 SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            M G           +D+  F R +L           + E   R AD    W+   IRP+
Sbjct: 431 EMLGHRLREFYL---DDKALFPRQVLLQPSHQVHDVWRREIEYRHADGHSVWVRENIRPL 487

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           ++S+    + + +  DI+E K   E +   A  D LTG  NR  F   L T L    +  
Sbjct: 488 NDSD----QLLIVGEDISETKLLAEKLEYQARYDLLTGTYNRNHFELELKTALREVDSHR 543

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F ++L 
Sbjct: 544 RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNSVLARMGGDEFAVLLK 602

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +    I    + +           +  + ++ S+G      +  T   +   A+ A +
Sbjct: 603 DCDEYGAINIAKVIISTLGEHLFIWEDTRLFISCSVGIRIIDHTAETPQMVHAQADSACH 662

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDEE-IVG 737
            AK +G N    F + +    R  ++      +  A+ N  L L    ++ L   E ++ 
Sbjct: 663 AAKEQGRNRYNLFSLDNEELQRRQMEMQSVNLVHEALSNQRLELFAQRVMNLQSPESLMY 722

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E L++    +   +S + F+  +E   +   I+  ++ +         D          
Sbjct: 723 FEILVRIRDAQGNYVSPAIFIPASERYNIAHWIDKQVINQALEWFEQRPDVVEKLG-RCS 781

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++ + + + E  + +   +  +     +I L  +E+  MGN +++     R + +G  
Sbjct: 782 INLSGQSMGNQEFIDFLFERLKNSTMPCEKICLEITETAAMGNLDQAIDFFTRAKSLGCM 841

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 842 IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEMDRVMVRSINDLAKQLGKVTVA 901

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  E  ++ L  +G DY Q   +  P     +++ L  
Sbjct: 902 EFVENEQVMQHLIDLGVDYGQGYGIGHPKPLAELVENLSS 941


>gi|304407981|ref|ZP_07389631.1| diguanylate cyclase/phosphodiesterase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343000|gb|EFM08844.1| diguanylate cyclase/phosphodiesterase [Paenibacillus
           curdlanolyticus YK9]
          Length = 416

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 111/405 (27%), Positives = 199/405 (49%), Gaps = 7/405 (1%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +            ++ I +D +K+IN   G  +GD +L S+ RR+  L+       R+
Sbjct: 15  QQVLEVQGGQGRTIALLYIGLDHFKRINKSFGHNIGDQLLFSIGRRLHRLVTQDAHAVRI 74

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F  +         I +    +   + +P  L ++ I + ASIG + +     ++ +
Sbjct: 75  GGDSFVYLFTYCT-VSDIHEVIDQLNAQLRLPFRLGDQSIYIGASIGVSRFPEHASSADQ 133

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRL 730
           +LK AE+AM   K + G+ V+ +           +    +L  AV++    L Y PII L
Sbjct: 134 LLKKAEMAMVDIKEQMGSRVQMYDPKLSEKLARRLLIHAELAKAVQHWPFTLYYQPIISL 193

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            + + +G+E LI+W HP  G I  SEF+ +AEE  +I  I +++LE        W+D   
Sbjct: 194 KNRQAIGMECLIRWFHPTLGAIPPSEFIPLAEETGLIAPIGMWVLEEACLQNKRWQDAGL 253

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             PI + +N++S+   D    E + A++ +T  +P  ++L  +E V+M +   +  +L  
Sbjct: 254 -SPIVMSVNLSSRQFYDPSFLEALNAILQRTGLAPQWLELEITEGVMM-DIRTTLPILRE 311

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
           LR  GI L +DDFGT  S L YL  +P D +K + S +    E     AI+++++ M+  
Sbjct: 312 LRARGIQLAIDDFGTGYSSLKYLKELPVDKLKIDRSFIQHIEENVVHAAIVQALLTMSAQ 371

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +E  ++A+ +  + ++  L RMGC+Y Q    + P+      +LL
Sbjct: 372 LELHVVAEGVERDEELDALMRMGCEYAQGFLFSRPVAAEEASELL 416


>gi|330890184|gb|EGH22845.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 545

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 208/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 101 VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLTARLAEGGSLALGHLDLDNFRR 155

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 156 ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 215

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 216 DVLSEPYWVDGESLLLGCSLGIAHSQTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 274

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 275 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWCHQARGLLPPSE 334

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  
Sbjct: 335 FVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 393

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G   +LDDFGT  S   +L  +
Sbjct: 394 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGGRFSLDDFGTGYSSFMHLNSL 453

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 454 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 513

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 514 VQGYLISRPLPIADLVAYLRSE 535


>gi|283835519|ref|ZP_06355260.1| sensory box/GGDEF domain/EAL domain protein [Citrobacter youngae
           ATCC 29220]
 gi|291068725|gb|EFE06834.1| sensory box/GGDEF domain/EAL domain protein [Citrobacter youngae
           ATCC 29220]
          Length = 730

 Score =  413 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 216/467 (46%), Gaps = 22/467 (4%)

Query: 499 IRPMSNSNGDILRYIGIANDI----------TEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           I P  + + +I    G    +              +  + +   A  D+LTG+PNR SF 
Sbjct: 256 ITPYLDQDDEIGHLAGAIEKLRVAMKERGYLQRMHEMSQKMEHMAHHDSLTGLPNRVSFG 315

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             L   +     D+     +++ID+D +K +ND  G   GD++L+S+ +R+  LL   DI
Sbjct: 316 QALDKRVSEIHLDEK-PFNLLLIDLDNFKPVNDTFGHKAGDELLISVAQRLQLLLGPNDI 374

Query: 609 LARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            ARL G+ F I+   S+N   +    A  + ++++ P        +++ SIG  +     
Sbjct: 375 AARLGGDEFAILQHVSDNAIREANRLAKRIIRALSTPFTWSTHTFSISCSIGITTAPYQG 434

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYH 725
             +S ++ NA+LAMY +KH G      F   +   ++  + I +++   ++N E  L Y 
Sbjct: 435 NNTSTLMINADLAMYASKHHGRGCFHFFEDGMVMKQTHSLFINQEIIDGIDNKEFELHYQ 494

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PII L DE + G E+LI+W+HP  G I    F+ IAE   +I  +  +++ +       W
Sbjct: 495 PIINLADESVYGYESLIRWNHPTKGMIYPDYFINIAESSGLIVRLGEWIIRQSCEAAAKW 554

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            +        I +NI++  L    L + ++  +  +  +  R+++  +ES  + +   + 
Sbjct: 555 PEHT-----RIAVNISAYQLHSPGLVDVIKDALRISQLAAERLEIEITESEKL-DKSIAL 608

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSII 903
            +L  +R +GI + +DD GT  + L YL   PF  +K   +L+    +   +  ++  +I
Sbjct: 609 PVLQEIRALGIEIAMDDLGTGYAALDYLLIYPFTRIKIARTLVDKLQQDNASQYLIVMLI 668

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             A   + ++ A+ +        L  + C  +Q    + PL  + +L
Sbjct: 669 QFAHKYDMSVTAEGVETAQQRDILRDIECQNVQGYFFSYPLREHEVL 715


>gi|119897826|ref|YP_933039.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119670239|emb|CAL94152.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 799

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 207/433 (47%), Gaps = 7/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   I   A QD LTG+PNR     RL+  +  +         +++  ID+++ +N+ L
Sbjct: 364 AAEATIKRMAEQDTLTGLPNRWRLRLRLSEAIVAAKAAHRP-FALLMTGIDRFQDVNETL 422

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  R+   L  P  +AR+    F I+L S + +   A  A  +   +  
Sbjct: 423 GYQQGDALLCEVAARLSGPLADPANIARVGEAEFAILLPSAD-ASAAAVAAQRIIADMLA 481

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P+   +  +    S+G A +         +++ A +AM+ A+ +G               
Sbjct: 482 PVASGDIMLDAGCSVGIAVFPGHGAEPDTLIRRANVAMHQARQQGRGFALYTGGRDRECA 541

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ +  DL  A++N+EL L   P +R    EI G+EAL++W HP+ G I   EF+ +AE
Sbjct: 542 RRLALIGDLHRAIDNNELRLYCQPKMRFASGEICGVEALVRWQHPQLGLIQPDEFIGLAE 601

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  ++++   R    WR+      + + +N++++DL D  L E ++ L++   
Sbjct: 602 HSGLIGPLTDWVMQAAFRQGYVWREAGLH--LPLAVNLSARDLRDPRLLERVRNLLATWG 659

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P   +   +ES +M +P+ S   L RLR++G+ L +DDFGT  S L+YL  +P D +K
Sbjct: 660 GEPGSAQFELTESALMHDPQGSLDCLSRLRELGVELFIDDFGTGYSSLAYLQKLPVDAIK 719

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +           I+RS I +A ++E  ++A+ +      + L   GCD  Q   V
Sbjct: 720 IDKSFVHDMLSNPDSAVIVRSTIDLAHDLELEVVAEGVEDRAGWEHLAARGCDVCQGYVV 779

Query: 941 ASPLGFNSILKLL 953
             P+   +  + L
Sbjct: 780 GQPVPAEAYTERL 792


>gi|77465404|ref|YP_354907.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389822|gb|ABA81006.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 881

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/568 (21%), Positives = 239/568 (42%), Gaps = 21/568 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + + +     +  +  S   +   +     V    +   +L L        +  
Sbjct: 317 DRKVLERELATRNAFLTAVLQTSVSAIVALNAEGGIVYANDEARRLLVLQPHRGGLRMEA 376

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDI 509
            L  +  + R      + S +    G   ++ R  +R  D QF  + I   P+  +  D 
Sbjct: 377 VLETL--DGRPLPEADMPSALVRATGAPLHDLRYAIRRPDGQFGILSINAAPLPQAADD- 433

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            R +    DIT  + S E +   A +D LTG+ NR++  D + T L  +A        ++
Sbjct: 434 ARIVISVTDITHAEASAERLRRQAAEDPLTGLANRRALADAVETRLTEAA-----PFALV 488

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K +ND+     GD VL     R+  +     ++AR+ G+ F ++     ++  
Sbjct: 489 MLDLDNFKAVNDLQRHDTGDAVLRIAADRLRAVAGADCLVARMGGDEFMVLAPG-TDAAS 547

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
               A A+R +I+ PI +  + + + AS G A       + + ++  A++A++ AK  G 
Sbjct: 548 APRLAEALRAAISAPIEVGRQPVHLAASAGIALHPEHGTSMALLMTGADIALHAAKRAGR 607

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N       + F ++     I + L   VE   L LV+ P  R       G EAL++W  P
Sbjct: 608 NRSVLLSQAQFAAEARRSAITQALAADVEAD-LRLVFQPQFR-ACGAFDGAEALLRWTDP 665

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I  +EF+ IAEE  +I+ I+  +    AR +  W  +       + +N +++    
Sbjct: 666 RLGEIGPAEFIPIAEEAGLIQRIDAHVAVLAARQLGLWARRGWRH--RLAVNASAQTFAR 723

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E +   +++    P ++ +  +++ +      +   +  LR+ G+ + +DDFGT  
Sbjct: 724 AGFAEELLQHLAEEDVCPQQLVVELTDTSLATLSSVADHNIATLRRAGVGIAIDDFGTGY 783

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           + LSYL  I    +K +   + G           ++++I+ +A  +   + A+ +  E  
Sbjct: 784 ASLSYLHRIEATEIKIDRGFVAGLETAERRDSKPLIQAILSLAHALGLAVTAEGVETERQ 843

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
              L+  GCD +Q   +  PL   +   
Sbjct: 844 RSWLSAEGCDRLQGYLLGRPLPVEAFEA 871



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 25/226 (11%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWM-AITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               G    VL+           +GL +    + +D   +         +   L      
Sbjct: 126 MARHGIRALVLMPLTAGTALTGVVGLSLFRARRPVDPAEMALLHSIAEAMGAALARRDAE 185

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +  +A    ++ +  + ER +       ++V   D+ +  V          G +  ++ G
Sbjct: 186 RRAVAARSAARDVARNLERLARVTELMTNLVIVTDVEQQIVWVNRAFERQTGHSLEAIRG 245

Query: 448 PIRNWLPYI-----HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             RN+   +                + +        + Y      A  Q +W+     P+
Sbjct: 246 --RNFAEVVRGPGTDPGVCAAVAEAIRTCSSCEGETINY-----TAAGQPYWIRFNAHPL 298

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           S+++G    +  +   IT++K                 +  R +FL
Sbjct: 299 SDADGRYAGHASVETVITDRKVLERE------------LATRNAFL 332


>gi|120555097|ref|YP_959448.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120324946|gb|ABM19261.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 218/436 (50%), Gaps = 13/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +L  A  D+LTG+ NR   LDRL   L  +        +++VI+ID +  IND  
Sbjct: 328 ERREELLYRARHDDLTGLLNRAGLLDRLEGRLSQAR-----PFSLVVINIDNFSGINDRF 382

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+  GD  LV   RR+  L +  D LARL  + F I+  +  N   + D   A+ + +A 
Sbjct: 383 GLEYGDHTLVEFGRRLERLAERHDDLARLGSDEFAIVTPN-TNIPSLTDACRALVEDLAQ 441

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +    + V AS+G A +     + S+++++A LA+Y AK    N V  ++     + 
Sbjct: 442 IFEVGRLRLQVGASVGVARYPEDGDSLSKLIRSAHLALYEAKQS-RNAVCVYKAEMETAY 500

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +  ++ L   + +  LY+VY P +     E +GLEAL++W   + G +S +EF+ +A
Sbjct: 501 LRRLNVEQRLRYGLASHALYMVYQPQVNDA-GETIGLEALVRWQDEELGFVSPAEFVDVA 559

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  ++  +  F+L+   R+     D+    P+ + INI+          + +   +   
Sbjct: 560 EKSGLMIPLGNFVLDTSLREFRQLIDKV-KQPLDLAINISVIQFCQPGFVDTVLNALKTH 618

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SPS + L  +E++ MGN ++    +  LR  GI L +DDFGT  S LS L  +P D +
Sbjct: 619 DVSPSSLVLEITETLFMGNFDQVLQTICDLRSHGIRLAMDDFGTGYSSLSLLRQLPLDEL 678

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G    EK   ++RSI+ +A++   ++IA+ +  +   + L +MGC   Q  +
Sbjct: 679 KIDKSFVDGIVEDEKAANMVRSIVAIARSHNMSLIAEGVEEQAQAQALIKMGCLRFQGYY 738

Query: 940 VASPLGFNSILKLLKE 955
            + P+    + ++L +
Sbjct: 739 FSRPVPMADVRQVLTD 754


>gi|300310189|ref|YP_003774281.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gi|300072974|gb|ADJ62373.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 706

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/445 (25%), Positives = 223/445 (50%), Gaps = 24/445 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +L  A  D LTG+PNR    DR+   ++++  +      V+ +D+D +K IND L
Sbjct: 253 RTNDKLLHFATHDVLTGLPNRALLADRIQHAVEVARRNGKT-FAVLFMDLDGFKAINDSL 311

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +LV++ +RI + L+  D++AR+ G+ F +++ + ++   +   +  +  ++  
Sbjct: 312 GHAVGDGLLVAVAQRIRQCLRGEDMVARIGGDEFVVVVGNLSSPDVVEQLSENILAALRQ 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
              + +  + VT+SIG A + +S  +   ++KNA+ AMY AK  G N    F  +     
Sbjct: 372 DFQIDDATLRVTSSIGIAVYPNSGDSVDALMKNADAAMYEAKQSGRNTYRFFEPAMHASA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + +++ L  A++  +  L + P  R   +E+ GLEAL++W HP+ G ++ +EF+ IA
Sbjct: 432 MRHLQVRQALQQAIDEQQFRLHFQPKYRGASKELTGLEALLRWTHPQLGEMAPTEFIPIA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  ++L+ +   I  W D A M P+ + +N++    +  +L   +  L+   
Sbjct: 492 ERSGQILCIGDWVLQAVCEQIARW-DAAGMKPVKVALNLSPLQ-MRTDLVARIVELVGAA 549

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P R+    +E+  M + ERS+ ++G L+ +G  + +DDFGT  S L+YL       +
Sbjct: 550 GIAPQRLMFEITETAAMKDVERSQRVIGELQALGFDIAIDDFGTGYSSLAYLAQFHCRQI 609

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAK-----------NIETTIIAKDIYGEIDIKELTRM 930
           K +    +       +         +            ++  ++A+ +  E  ++EL  +
Sbjct: 610 KIDRFFTSRLDGDDHS--------GRAIVAAIIALAHALQMEVVAEGVETEGQLRELQLL 661

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
            CD +Q   +  P    S+  L++ 
Sbjct: 662 HCDQVQGFLLGRPAEAPSVPGLVQA 686


>gi|83718235|ref|YP_440525.1| sensory box protein [Burkholderia thailandensis E264]
 gi|83652060|gb|ABC36124.1| sensory box/GGDEF/EAL domain protein [Burkholderia thailandensis
           E264]
          Length = 800

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 244/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 213 FVASMFLMYLALVWARRAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 272

Query: 432 PDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +LG ++ +  G P+ + L  +          + + +    R  ++ E  +   D+
Sbjct: 273 NAAEQLLGYSAAACVGAPVSSVLMLLDKETGHAVDIVDEFWARDERTPIKREVHLLRRDH 332

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 333 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 392

Query: 551 LTTILDLS-ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L  + ++ D     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 393 LEIALADTTSSKDRADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQSCLDDDDVL 452

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 453 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 512

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+E     L  
Sbjct: 513 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALETDGFRLYV 572

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 573 QPIVHTRPDSRTPERAEVLLRMTDSAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 632

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +   +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 633 SALPAREYHE---YNVNLSGASISDERFLEFVIAELLSSGLEPSVICFEITETIAVKNLE 689

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +G LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 690 LASRFMGELRAIGCRFALDDFGAGMSSFRYLRSLPIDYLKIDGEFVSNMMSDRVSYGVVS 749

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++  + +A+ +  E+++  L  +G D+ Q    A P  
Sbjct: 750 AINEVAHSMRCSTVAEHVESEVELGMLRELGIDFCQGYFFAQPSP 794


>gi|332304451|ref|YP_004432302.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171780|gb|AEE21034.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 804

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 207/430 (48%), Gaps = 6/430 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LTG+PNR      L   +   +        V+++D D ++KIND  
Sbjct: 357 QNTRELENIAMYDRLTGLPNRNMLNFVLRKKIAALSRAPG-PLVVILLDFDNFRKINDSY 415

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD+ L++  +R+   L+  D+++R  G+ F I+L   +        A  +      
Sbjct: 416 GHGIGDEFLMAAAQRLRSNLRESDVISRFGGDEFVIVLQEIDEVSNGITLAEKLVAKFRE 475

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
            + +  +    + S+G  S     +T  ++++ A++AMY +K  GG+    F   +S+  
Sbjct: 476 SVEIGAQRFYTSVSLGITSCDGQNVTVDDLVRQADIAMYASKDAGGDRYTLFNEGMSTQV 535

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + I+ D+  A+   +        I +   ++VG EALI+W HPK G I   EF+ I 
Sbjct: 536 MRHIEIEHDVRDALLQEQFKFALQAQIDITTGKLVGFEALIRWLHPKSGYIMPDEFIPIM 595

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    +  +  + ++R    +    +   M    I +N+++   LD  L   M+  ++++
Sbjct: 596 ENSESMITLGYWGIKRAFSILA-HLESLGMSGYRIAVNLSASQFLDPNLINFMREQLAQS 654

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                +I+L  +E  V+ + E+++ ++ +L+ +G S ++DDFGT  S L+YL  +P D +
Sbjct: 655 DQGADQIELELTERTVVADIEQTKGIMHQLKALGFSFSIDDFGTGYSSLAYLSQLPVDII 714

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G   +     I++S + M + +   ++A+ +  E  +  L+ M CD  Q  +
Sbjct: 715 KIDRSFIAGMENSSADKQIVKSTVAMVRKLGMKVVAEGVETEAQLSTLSTMRCDIAQGYY 774

Query: 940 VASPLGFNSI 949
           ++ P+    +
Sbjct: 775 ISKPVLEEEL 784


>gi|110681326|ref|YP_684333.1| EAL/GGDEF/PAS domain-containing protein [Roseobacter denitrificans
           OCh 114]
 gi|109457442|gb|ABG33647.1| EAL/GGDEF/PAS domain protein [Roseobacter denitrificans OCh 114]
          Length = 687

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 129/638 (20%), Positives = 266/638 (41%), Gaps = 25/638 (3%)

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
           ++  +R+  +    +      IG  +  T      +        + +  +       + +
Sbjct: 39  VRVADRSFFVASPTVRNVFESIGFELVFTAISVAMVALLLPFALMAVSGMRAIVRPHKDL 98

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PI 449
           L +         + E  +     + + V   D  +  +       T+ G ++    G   
Sbjct: 99  LQSQDLLAEKQGELEELAQIAEMASESVTVTDENQRILWVNRAFTTMTGFSTEEAVGRTP 158

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           R  L           R  +   V  RR  +Q E      D   +W+ + I P+ +     
Sbjct: 159 RQLLQG--PETSAEARNEIRQAVKARR-PVQTEIVNYHKDGSRYWIKLSIAPLISLRTGE 215

Query: 510 LRYIGIANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           LR+  IA D+TE K++              A  D LT +PNR+   + L + +  SA   
Sbjct: 216 LRFTAIATDVTESKEAQHAISDAKRETEHQARHDPLTALPNRRYLDEVLESEVCNSAA-- 273

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               T++ +D+D +K +ND LG A GD VLV +   +   +   D+ AR+ G+ F I+L 
Sbjct: 274 --PRTLIRVDLDHFKNVNDTLGHAAGDFVLVEVANCLRRSIGPSDLAARVGGDEFVILLA 331

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            + ++         +R  +   +    R   + AS G A+ +   + + ++LK+A+ A+Y
Sbjct: 332 VDGDTRAATALTEKLRVQLGTDMVFEGRTCRIGASFGIATASEGLVGNEDLLKSADAALY 391

Query: 683 HAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N    +      +   +  +  ++   +   E    + P I  + EE+VG+EA
Sbjct: 392 VAKDTGRNTTTLYTPDVHHAVLAKRQLSSEIEHGIARGEFIAFFQPQIDALTEELVGVEA 451

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G +  +EF+ +AE+L ++  I+  +       +    +     P  I  N+
Sbjct: 452 LVRWWHPTRGILPPNEFLKVAEQLRILSDIDRQVFAYGLDCMRILNEDGLRVP-KISFNV 510

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLT 859
               L++  + + +   +       +R+ L   ESV++  +    +  +  LR +G ++ 
Sbjct: 511 GMHQLMNP-VIDYLAGQVK---IGNTRVSLEVLESVLVEEDATGFQTRISELRDMGFTIE 566

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  + +  L  +  D +K +  L++    +     +++S++ + K +  ++ A+ 
Sbjct: 567 VDDFGSGHASVVGLKALNPDIMKLDRVLVSPVTESASARTLIKSMVDIGKALGISVTAEG 626

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I        +  +GCD  Q  + A P+ F  + + +K+
Sbjct: 627 IETAEHAAIMRDLGCDTFQGYYFARPMDFGQLREFIKD 664


>gi|332185315|ref|ZP_08387064.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332015039|gb|EGI57095.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 613

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 198/441 (44%), Gaps = 17/441 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +    +  A  D LT  PNR +FL      L           T  +ID+D++K +N
Sbjct: 168 ELEANESRAMHIAMHDPLTDAPNRAAFL----RGLTERGRMPGRFVT-AMIDLDRFKLVN 222

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD+++  +   + +      ++ARL G+ FGII  S  +          +  +
Sbjct: 223 DTLGHLAGDELIREVCTTLQQYAPAGALVARLGGDEFGIIFDS-ADEGVAVAACERIVTA 281

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            A   ++L   +   AS G      +     +++++ A++A+  +K  G   V  F    
Sbjct: 282 CAKTFSILGHSVRCGASCGLVMSDEASERDPTDLVRRADMALNDSKRSGRGMVRVFDERM 341

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               RV   ++  L  A+   EL LV+ PI+   D  I G EAL++W +P  G +S + F
Sbjct: 342 DEGIRVRRLVEAGLAEAIVRDELTLVFQPIVGRGDLGIAGFEALVRWRNPDHGVVSPAIF 401

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  +I  +  ++L+     +  W DQ      ++ +N +      +     +   
Sbjct: 402 IPIAEESNLIHQLGDWVLDEALAQVRHWPDQ------YVSVNFSPIQFRRSHFVGHILDS 455

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P+R+++  +E+ +  + ER+   L  LR++G  + LDDFGT  S L  +    
Sbjct: 456 VRRAGVDPARVQIEITETAIFDDAERAAETLCELRRLGFRIALDDFGTGYSSLYNIRKFA 515

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S + G   +R   AI+ SII + + +   ++A+ +  E   + L   G  ++
Sbjct: 516 LDCLKIDRSFIDGMGRERESAAIVHSIIHLGRALGLGVVAEGVETEAQAQALRVAGASHL 575

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    + P+      KL   R
Sbjct: 576 QGFLFSRPVAPGEARKLAARR 596


>gi|222086873|ref|YP_002545407.1| kinase/esterase protein [Agrobacterium radiobacter K84]
 gi|221724321|gb|ACM27477.1| kinase/esterase protein [Agrobacterium radiobacter K84]
          Length = 572

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 139/569 (24%), Positives = 246/569 (43%), Gaps = 46/569 (8%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD+   ++          GL    +      WL  +H +D        D+ +  + G   
Sbjct: 3   WDMQMHKLY-------QTGLRDRKV--SSEVWLNALHPDDVAQAVADFDAAIAEK-GFYN 52

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRY---------IGIANDITEQKKSLE---- 527
            +FR+   +    ++  R       +G              + +  ++TEQK   E    
Sbjct: 53  SQFRIFLPNGDVRYLRSRAHFFEGPDGAPSFIGAEWDVTADVLLNRELTEQKAVAEARAI 112

Query: 528 -------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                   I   A  D LTG+PNR+ F  RL  +    A +      ++ ID+D +K+IN
Sbjct: 113 ALEQSRARIEHAADHDYLTGLPNRRYFDRRLAELCADQAVE---TLAILHIDLDGFKQIN 169

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD  L +   RI   +   D++AR+ G+ F  +L++   S ++   A  +   
Sbjct: 170 DKWGHAAGDATLQTAAARILGGIAAGDMVARVGGDEFVAVLVNIATSDEVGTIAEDILWR 229

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +   I      + V ASIG A   +    ++ +L  +++A+Y AK  G N VE F     
Sbjct: 230 LRRDIRFGHEMLQVGASIGAAWSVADG--AANLLAESDIALYQAKKLGRNRVEFFTPKLQ 287

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   + E+L LA+  +E+   Y   +      IVGLEAL +W HP  G +  + F+
Sbjct: 288 SDLQGERRLAEELRLALMRNEIVPFYQIQVDACSRRIVGLEALARWRHPGKGLLPPAAFL 347

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +   I+  +L R   D  +W  Q  MPP  I +NI++  L D  L E +Q L 
Sbjct: 348 KVAEEYGLTAEIDAAILNRALSDRAAWALQGLMPP-RISVNISASRLADPGLVERLQML- 405

Query: 819 SKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                    I     E++ + +P +R    +  ++++ I + +DDFG+  + L  L  + 
Sbjct: 406 ---NIPRHAIVFELIETIFLDDPDDRVLANVDAIKRMDIDIEIDDFGSGHASLIGLVKLK 462

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  L+T    ++++  ++ SI+ +A+ +   ++A+ +  E   + L   GCD +
Sbjct: 463 PKRLKIDRQLVTAITVSDEQRRLVGSIVEIARALNVEVMAEGVETEEHAQLLADAGCDGL 522

Query: 936 QDSHVASPLGFNSILKLLKE-RFPLVKNT 963
           Q      P   + I  LL   + P+   +
Sbjct: 523 QGYAFGYPSPASEIAALLASAQRPVAARS 551


>gi|254508270|ref|ZP_05120393.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219548787|gb|EED25789.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1047

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 113/574 (19%), Positives = 222/574 (38%), Gaps = 15/574 (2%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + ++      S        ++   D              +LG     + G       Y+
Sbjct: 482  EERLYQREANLSHYYDQQPVMMVTLDDQNRIQQVNQFAEQLLGYTPDQILGHRLREF-YL 540

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H +     R +L       +G  + E   R AD Q  W+   IRP+     +    + + 
Sbjct: 541  HEDALIP-RQVLLQPKQVMKGVWRREIEYRHADGQVLWIRENIRPLV----ESGHLLIVG 595

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             DITE +K  + +   A  D LTG  +R  F   LT  L    +       ++ +D+D+ 
Sbjct: 596  EDITETRKLSDQLAYQARHDLLTGTFSRNFFEKELTKALKEVESYTRTH-AMLYLDLDQL 654

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND  G   GD+ +    R + E+L +  +LAR+ G+ F I+L             + 
Sbjct: 655  KVLNDTAGHEAGDEAIKFCARTLEEVLPYNTVLARMGGDEFAILLKDCTELDAKKLAKMI 714

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +      P    +  +++  SIG      +  +   +   A+ A + AK  G N    + 
Sbjct: 715  IDNLGEQPFVWQDIRLSLNCSIGIRLIDHTASSPQMVHAQADTACHVAKEEGRNRYSLYC 774

Query: 697  VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGN 751
            +      R   + +    +  A+ N  + L    II    D++ +  E L++        
Sbjct: 775  LDDQELRRREQEMESVNLVHDALANQRIELFAQRIIALDNDDKGMHFEILVRIRDVNGDY 834

Query: 752  ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
            IS   FM  +E   +   I+  ++ +      +           + IN++   + + E  
Sbjct: 835  ISPGIFMPASERYNIAHLIDREVVSQTLDWFGANPAALENLS-QVAINLSGHSMGNQEFI 893

Query: 812  EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            + +   +  +    +++ L  +E+  M N +++     +L+ +G  + LDDFG+  S   
Sbjct: 894  QFLLNKLKDSAVPCNKVCLEITETAAMSNMKQAIEFFSQLKALGCLIALDDFGSGLSSFG 953

Query: 872  YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            YL  +P D VK +G  +           ++RSI  +AK +    +A+ +     I +L  
Sbjct: 954  YLKKLPVDIVKIDGIFVRDIDVNEMDHLMVRSINDLAKQMGKRTVAEFVENTRIIDQLME 1013

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +G DY Q   +  P    ++++ L +   +   +
Sbjct: 1014 LGVDYAQGYIIGKPKPLPTLVEELIDENRVSAQS 1047


>gi|219380070|ref|YP_368540.2| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. 383]
 gi|219363744|gb|ABB07896.2| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. 383]
          Length = 611

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 243/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTAALEGLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 121 MCIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A  +     ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 178 GNLSALVPALMRA-QQAADGEGTCAALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKA 236

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 237 LVTPNEQLARVASDKFAVVLGAPDRTQASNAADALARRLQAAVREPYVYQGQTVHLSASI 296

Query: 659 GFASWTSS------KITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +             S +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERALPHRAQHHSPLLRRADHALSQAKASGGNALAFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVREAITLTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P +++ LL  L  +GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAQAKGLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 596 LARRFEAQQ 604


>gi|152995706|ref|YP_001340541.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150836630|gb|ABR70606.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 777

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 209/418 (50%), Gaps = 8/418 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ +R      L  ++      D     ++ +D+D +K IND  G  +GD +LV++
Sbjct: 344 DELTGLLSRYQIQLELNELIVSCQEKDKQLAALI-LDLDHFKTINDAFGHELGDKLLVNV 402

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLK--IADFAIAMRKSIAMPINLLEREIT 653
           ++R+  +L    ++  L G+ F ++L+  ++     +  FA  + + ++    +    + 
Sbjct: 403 SKRLASILPDDAVIGYLGGDAFLVLLVQSDDQGVPVLDVFAKDLIQKVSQSYFVDGLTLD 462

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDL 711
           +  SIG A +      +  ++KNA++A+Y AK  G      +     R       I+  L
Sbjct: 463 IGCSIGVAMYPEFGTDAVTLIKNADMAVYQAKTAGRATYHFYDGDMGRRFARNVRIETRL 522

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            LA+++  L L + P + L  E  VG+EAL++W+  + G +S +EF+ IAE+  +I  + 
Sbjct: 523 RLALQSGNLELHFQPKVDLTTERCVGMEALLRWNDEELGMVSPAEFVPIAEQTGIILPLG 582

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E+  R I+ W+ Q    P  I IN ++  L   +    + AL+ K    PS +++ 
Sbjct: 583 DWVFEQAFRHILEWQAQGITVP-PIAINCSAAQLKRIDFLPKLLALLDKYQVDPSLLEIE 641

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+++ + ER   LL +L ++G+ L +DDFGT  S L YL  +PF  VK +   +   
Sbjct: 642 VTESILIEDAERCAELLRQLSRLGMKLAIDDFGTGYSSLGYLKDLPFHYVKIDQVFIRNI 701

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +K  A+  +II ++ ++   +IA+ I     +  L   GCD  Q    +  LG N
Sbjct: 702 IEDKKHAALTHAIISLSHDLGLKVIAEGITDIHQLIMLQDFGCDIGQGYLFSKALGAN 759


>gi|253997107|ref|YP_003049171.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983786|gb|ACT48644.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 575

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 105/443 (23%), Positives = 213/443 (48%), Gaps = 6/443 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  ++   +   A  D +TG+ NR+ F ++L   +  +   ++ +  ++ +D+D +K IN
Sbjct: 129 QLVETYARLKYLAENDPMTGLSNRRYFEEKLRGEIKRAQRFES-KIGLLFLDVDNFKLIN 187

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L  +  R+  L++  DI  RL G+ F I++   +    +   A  +   
Sbjct: 188 DSLGHDVGDQILQQIANRLLTLIRQGDIACRLGGDEFAIVVNDIDEETSLGLLAQRILDC 247

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  PI L + +  ++ SIG +++     T+ +MLK+A+LAMYH K  G N    F     
Sbjct: 248 LHEPIVLAKTQHFISISIGISTYPECAHTAEDMLKHADLAMYHVKQHGRNGFHFFTQELQ 307

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               ++++++E L   V  S+L   Y P+I   +  + G E L++W+HP  G ++   F+
Sbjct: 308 ERVMNKIVLEEQLHSGVLQSQLQQYYQPVINASNFNVCGAEVLLRWNHPTRGILTPDSFL 367

Query: 759 LIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQAL 817
              EEL  +  I+          +  W   +       + IN + + L +      +++ 
Sbjct: 368 DAVEELGFLSEIDTTSRRLACNQLAEWHLTKLVDKNFVLAINASEQLLNEESFLTTIKSD 427

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +       S + +  +E V++ N +++  +L +L+ IG+++ +DDFGT  S ++YL ++P
Sbjct: 428 LDNAGLFGSSLSIEVTEGVLVSNFDKTAAILNKLKDIGLTVAIDDFGTGYSSMAYLKWLP 487

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             T+K + S +     +     +L++II +AK+++ ++I + +            G D  
Sbjct: 488 ASTLKVDRSFVQNVPESAADCRVLKAIITLAKSLDMSVIVEGVETIEQAYLCREYGADMF 547

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q    +  L   +    + +  P
Sbjct: 548 QGYLFSRALSPENFADFITKHNP 570


>gi|15615533|ref|NP_243837.1| hypothetical protein BH2971 [Bacillus halodurans C-125]
 gi|10175593|dbj|BAB06690.1| BH2971 [Bacillus halodurans C-125]
          Length = 543

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 125/543 (23%), Positives = 233/543 (42%), Gaps = 35/543 (6%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           ++  D     +         L +          +         R++    L +    +  
Sbjct: 27  MFTMDEEGALLNMNEGAMETLRVDWEQ--NQRSSVFQLFESECRESLYLALATV--NKIS 82

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
           +++    ++     F    + ++ + +    ++ +I    D    K            D 
Sbjct: 83  QVEKVELIKRNGETFETFCLSLQLLPDK--QVIAFIAPLID----KGM----------DP 126

Query: 538 LTGIPNRQ---SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           LTG+P RQ     ++R          +      + +I++D++K +ND LG   GD VL +
Sbjct: 127 LTGVPIRQEVPRLMER------TFQENQAETYVLFLINLDRFKLVNDSLGEGYGDQVLQT 180

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L RR+   L     +AR+SG+ F      +    K    A  +   I  P  + E + T+
Sbjct: 181 LVRRLLWQLPNQQWIARVSGDEFIACAAIKGELPKKETLATYISSIIQQPFQVDEVQFTM 240

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
           TASIG A +     +   +  + E A+ HAK RGGN V  F             ++ DL 
Sbjct: 241 TASIGAAVYPMDGKSVEMIWNSLERALRHAKARGGNCVSWFCQELKDEWIHPFRLENDLR 300

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            AVEN EL L + PI      E  G E L++W+HP  G +  + F+ +AEE+ +I  +  
Sbjct: 301 RAVENQELELYFQPIFETTTGEHCGEEVLVRWNHPALGVLGPNFFIPVAEEIGLIGVVGK 360

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+   +      ++     + + +N++ +  L  ++ + +   ++K    PS +++  
Sbjct: 361 WVLDEACKQKALLIEKEA-SSVPMSVNLSLRQFLQPDIVDMILDSLNKYGLDPSLLEVEV 419

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E + + +  R+  +L +LR  GI ++LDDFGT  S L Y+  +P   +K + S +    
Sbjct: 420 TERITI-DMNRAMKVLQKLRAQGIRVSLDDFGTGYSSLQYISQLPIQKLKIDKSFIAEIG 478

Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 AI+  II +   ++ T++A+ +  E  +  L    CD +Q  + A PL F+   
Sbjct: 479 VNSQVEAIISMIIHLGHELDLTVVAEGVETEKQLSFLKEKKCDTVQGYYHAKPLTFSEFK 538

Query: 951 KLL 953
           K L
Sbjct: 539 KYL 541


>gi|170079181|ref|YP_001735819.1| sensory box protein [Synechococcus sp. PCC 7002]
 gi|169886850|gb|ACB00564.1| sensory box/GGDEF domain/EAL domain protein [Synechococcus sp. PCC
           7002]
          Length = 860

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 211/438 (48%), Gaps = 12/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              + +   A  D+LT I NR  F D +   L+ + +       VM+ID+D++K +ND L
Sbjct: 417 HHFKELRYQARYDSLTTIGNRNLFHDTIQEWLN-APSLGYELIIVMLIDLDRFKDLNDTL 475

Query: 584 GIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNS-----LKIADFAIAM 637
           G  +G+  L  +  R+   L     I+ RL G+ F +     ++          + A  +
Sbjct: 476 GHKLGNTFLQQIALRLLSALSPYQGIVCRLGGDEFAVACPMMHSEWEEACQHAVELADIL 535

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFR 696
           + +I  P       I +TAS+G A + +    S   L++AE+AMY AK  R    +    
Sbjct: 536 QAAIKQPFVTAGNVIHITASLGIAMFPNHGTDSHAALRSAEVAMYAAKQKRTAYEIYHED 595

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +  +   R+ I   L       + +L Y P   L  + ++G+EAL +W HP +G IS +E
Sbjct: 596 IDHYTPRRLAILSSLGKPSARQQFFLCYQPKFDLRQKRLIGVEALARWHHPTFGLISPAE 655

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+   I A+  ++ E   +   +W++Q     + I +N+++  LLD       ++
Sbjct: 656 FVPLAEQSDAIHALTYWIWEEAFQQKKAWQNQGLD--LAIALNLSACSLLDPNCLTTFES 713

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +    P++++L  +E+ +M +P  +  LL     +G+ L++DDFGT  S LSYL   
Sbjct: 714 LLQQYEIIPAQVELEITETALMSDPRYALELLQCFANLGVHLSIDDFGTGYSSLSYLQRF 773

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+ + I+RS I +A ++   ++A+ +  +  +  L  MGCD 
Sbjct: 774 PVHALKIDQSFVVDMLTNEQSLVIVRSTINLAHSLGLEVVAEGVENQAILDLLKEMGCDI 833

Query: 935 IQDSHVASPLGFNSILKL 952
            Q   +  P     + + 
Sbjct: 834 AQGYFLGRPQRAEQVHRF 851



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 70/238 (29%), Gaps = 12/238 (5%)

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
            I++ +  +   +                     +     + +       ++      +G
Sbjct: 16  GIVYVLVKHDQKIAMRQQDYRYIIFGCILLALGRWLSFLQFSQ-------YLGTQWQSLG 68

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
                 +R  ++ +    VG  ++  +       +   A    S+ + S+          
Sbjct: 69  TVWQFGERFISEGVGLIFVGVGLVRWLPTLTAFQRRASAYRQTSEALASERNILQGLFNS 128

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
               ++  D   + +        +LG +   M       +  +   DR+  +  L     
Sbjct: 129 LQGALFVCDGAGNFIRWNRFYQEVLGFSDAEMSHLKA--IETVVPEDREFVQQQLLEVFS 186

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGIL 530
              G  + EFRVR    Q   +      +  + + +   + GIA DI+  K+    + 
Sbjct: 187 Q--GYAEGEFRVRTKQGQTLRLYGFASRVELDLDQNASGFTGIAIDISALKQVEAELR 242


>gi|126437697|ref|YP_001073388.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. JLS]
 gi|126237497|gb|ABO00898.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. JLS]
          Length = 623

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 107/457 (23%), Positives = 210/457 (45%), Gaps = 9/457 (1%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
               +     +   +  +  + E +   A  D+L+G+ NR++ +  L   L         
Sbjct: 151 EQNALQAIATLFAQLQARIAAEEQLQYLAEHDDLSGLLNRRALMAHLDRRLAEGQPGP-- 208

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +V+ +D+D+ K +ND LG + GD  +     R+    + P ++AR+ G+ F ++    
Sbjct: 209 -VSVLFLDLDRLKTVNDYLGHSAGDQFIKMFAERLRAGTEKPAVIARVGGDEFVVVPDEP 267

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            + + +  FA  ++  +   + +    +  T SIG A  T    T+S++L+ A+ A   A
Sbjct: 268 MDVVAVESFARRLQTWLQRRVVIDGEMLARTVSIGVAVGTPGDDTTSDLLRRADQAALSA 327

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE----LYLVYHPIIRLMDEEIVGLEA 740
           K  GG+    F         +    +L L     E    L L Y P I +   +++G EA
Sbjct: 328 KSTGGSKTAVFTTEMASQHAIRNDIELHLEGVIDEASSALVLHYLPEIDMRTGKVLGTEA 387

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G +    F+ +AE + +   +   ++     D   WR +       + +N+
Sbjct: 388 LVRWRHPTRGLLLPESFIGVAESINLAGKLGRLVMRSACADFARWRSRRTAGDAILRLNV 447

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L+ +     +   + +     S + L  +ESVV+ + E +R  L  L+++G+ + +
Sbjct: 448 SPVQLVSDGFAATVAGTLDEFGVDGSAVCLEITESVVVQDIEATRHTLAALKEVGVRIAI 507

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S+L++L  +P DTVK + S +     +   +AI+R+I+ +A   E  ++A+ +
Sbjct: 508 DDFGTGYSVLTHLKSLPVDTVKIDRSFVRDLGASPGDLAIVRAILALADAFELEVVAEGV 567

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 K L  +GC   Q   ++ P+   ++  L +E
Sbjct: 568 ETVAAAKTLLELGCPRAQGFMLSRPVDAAAMEALFRE 604


>gi|319784237|ref|YP_004143713.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170125|gb|ADV13663.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 688

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 117/450 (26%), Positives = 208/450 (46%), Gaps = 7/450 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I     E   +   +   A  D LTG+ NR    D   T++  +      R  V+ +D+
Sbjct: 228 AILRKTHELIDARNSMAFIAVHDGLTGLHNRTFLTDHFDTLIKGTHRR-RERLAVVQLDL 286

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K+IND LG A GD VLV   +R+ +  +  D+  RL G+ F +IL     +  I   
Sbjct: 287 DRFKQINDTLGHAAGDYVLVVTAQRMRDSCRASDLCVRLGGDEFVMILGGAGGTEDINML 346

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +   I  PI      I   AS G A +      + ++L +A+LA+Y AK  GG +  
Sbjct: 347 ARRILAHINEPIVFQGTTILPGASAGIAVYPIDADNAGDLLVHADLALYSAKKLGGGNFS 406

Query: 694 SFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F     R    R  ++ D+ +A+      + + P + L +  I G+EAL++W+H + G 
Sbjct: 407 FFSEELRRELDYRKQLEYDIKVAIAERAFQVYFQPQVSLTNGTISGIEALVRWNHAERGM 466

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   EF+ +AE+   +  I   ++ +   +   W          + +N++  +L +++  
Sbjct: 467 IPPGEFIPVAEKCGFMPEIGRIVITKAINEAAEWNRAGIAFG-RLAVNVSGTELREHDFD 525

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLL 870
             +   + K    P ++ L   ESV++ + +      L  +R  G+ L LDDFGT  + L
Sbjct: 526 AFLFETLEKAGLPPQKLSLEIVESVILDDEKTGIAAKLRHIRAAGVHLELDDFGTGYASL 585

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S++     D +K +   +    E      I+R+I  +A+ +  +I+A+    E ++  L 
Sbjct: 586 SHVNPNEIDRLKIDRRFVQNIHENGDNSKIVRAITELARGLGISIVAEGAETEAELDSLM 645

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +GCD +Q   +A P+  +  L+ L  R P
Sbjct: 646 AIGCDQVQGYSIAFPMPHDKALEWLTARMP 675


>gi|262279340|ref|ZP_06057125.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259691|gb|EEY78424.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 690

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/568 (21%), Positives = 245/568 (43%), Gaps = 11/568 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +  + E Q+  +  S D +   ++              LG+        ++ WL  +
Sbjct: 126 QQNLQKNIEIQNQMLDISVDCIKVLNVDGTVSHMNKSGCLALGVPVDETEFGMK-WLELL 184

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             + R+  R  L   +  +  R      +   D ++      + P+   NG+I + + ++
Sbjct: 185 PPHIRNRGRVALKKALQGKVARFAGMSCLPDQDPEY--WDNMLTPIHRENGEIGQILCVS 242

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++T+Q  +   +   + +D+LTG+ NR+SF  +L   L  S  D      +++ID+D +
Sbjct: 243 RNVTQQHLTENQLRNMSERDDLTGLCNRRSFKFQLKRTLAYSK-DSQTSVGLLLIDLDHF 301

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAI 635
           K IND LG + GD +L  L++R    +      +ARL G+ F +I+ +  +   + D A 
Sbjct: 302 KHINDTLGHSAGDHLLKVLSKRFSHCVDDERCFVARLGGDEFAVIINNLKSESDVRDLAA 361

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + +  PI  L   +    SIG A +    +  S +L  A++A++  K RG   +  +
Sbjct: 362 ILLQQLNQPITYLGNVLNGGMSIGCAIYPQDAVDQSGLLSCADMALHDLKARGRGGIRMY 421

Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                +               + +  +   Y P + L    +VG EAL++W         
Sbjct: 422 DPCMMQMTETVASQLNLARQLIRHHTIQPYYQPKVDLRTHRVVGFEALLRWHTTSAQRGY 481

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++     ++  +   I   M  ++ RDI  W D   + P+ + +N A  + L +   E 
Sbjct: 482 PAQIAEAFKDYNLASKIGETMQHQVLRDIAKWID-LGIKPLPVSLNAAPVEFLRDNYAEK 540

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +   I++       I++  +E ++     +     L +L++ G+ + LDDFGT  S L++
Sbjct: 541 LLKKINQFQIPTHYIEVEVTEHMLGDRGSDYVIRALNKLKQHGVHIALDDFGTGFSSLTH 600

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +   P D++K + S +          AI+++I  +A N+   +IA+ I      + L + 
Sbjct: 601 IRDYPIDSLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAEGIETPEQEELLRQF 660

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFP 958
           G    Q     S +  N ++ +LK+  P
Sbjct: 661 GYSIGQGFLFESAIDANQVISILKQNQP 688



 Score = 44.9 bits (105), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +I   D D  +
Sbjct: 9   QKHFIVEQIPLPTWVSDENGLILYCNVECTE---YWQDTFSPLPQQWLDFISPVDLDEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR--IRPMSNSNGDILRYIGIA---NDIT 520
                 +  ++ R++ + R+  + NQ+ W  +         S+     Y+      +DI 
Sbjct: 66  NRWLEAIRLQK-RIELKCRLLQSGNQYRWCKLSIQASKYRGSSLASEWYVSFLDIDHDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQNLQKNIEIQ 136


>gi|251794481|ref|YP_003009212.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. JDR-2]
 gi|247542107|gb|ACS99125.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus sp. JDR-2]
          Length = 683

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 208/436 (47%), Gaps = 10/436 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LTG+ NR +        LD +         ++ +D+D++K IND LG  +GD
Sbjct: 247 ERMAYSDPLTGLANRHAMNRYFDQKLDKAR-----SYGLLFLDLDQFKIINDTLGHDIGD 301

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            ++ ++ +R+   +       RL G+ F ++        ++   A  + + I  P  L  
Sbjct: 302 LLVQAVAKRLRSHVSEGAQTFRLGGDEFLLVTRGM-EPSEVEKLANRILEDIRKPYLLEG 360

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMI 707
            E+ +T SIG +      I  S +L  A+ AMY AK RG N    +     R    R+ +
Sbjct: 361 NELYITGSIGISLSPQHGIERSSLLIAADTAMYQAKRRGKNQYCLYDEQMERELLRRMEL 420

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL LA+   +  + Y P         +G+EAL++W+HP  G I   EF+ IAEE  +I
Sbjct: 421 EKDLRLALPREQFVVHYQPKWDAAANRAIGVEALLRWNHPLLGRIPPEEFIPIAEETGLI 480

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L +  RD   W +     P+ + +N++        L + + + +  +      
Sbjct: 481 VPITRWVLGQACRDCFEWNE-GRAEPLSVSVNMSVSVFDSKNLEDMVISALLHSGLDAHL 539

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E++VM N E     L  +R++G+ +++DDFG   S L  +  IPF T+K +   
Sbjct: 540 LELEITETIVMHNVEDVIEQLNPIREMGVQISMDDFGAGYSALGSIDLIPFQTLKIDKLY 599

Query: 888 MTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           M  S    + AI+++II +AK +   +IA+ +  E  I  L   GC  +Q  + + P+  
Sbjct: 600 MQQSDSPSKRAIIQTIIILAKQLNLEVIAEGVETEQQIAFLQSAGCSMMQGYYFSKPMSR 659

Query: 947 NSILKLLKERFPLVKN 962
             +   L++   + ++
Sbjct: 660 ADLDLWLQQSMVIDRS 675


>gi|15966617|ref|NP_386970.1| hypothetical protein SMc03942 [Sinorhizobium meliloti 1021]
 gi|307300348|ref|ZP_07580128.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti BL225C]
 gi|307319631|ref|ZP_07599057.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|15075889|emb|CAC47443.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306894753|gb|EFN25513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti AK83]
 gi|306904514|gb|EFN35098.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sinorhizobium meliloti BL225C]
          Length = 773

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/769 (18%), Positives = 292/769 (37%), Gaps = 52/769 (6%)

Query: 218 LIPTFAMAWVVLGYI---SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           L     +++V   Y    ++  G LS +V      L            + +++++   L 
Sbjct: 9   LPADIYLSFVSSLYQNRGTLVIGMLSHVVTFLLVFLKTSDTLYLGCTVAIVVLWIVRNLD 68

Query: 275 WNRW-----------HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
             R+             ++    +        L C       +  +    +  + V    
Sbjct: 69  MMRFDQLDLSGADYAAIRMWENRYIVGGVAVTLTCGIACGYAIAVTRDVFSQVACVSVTL 128

Query: 324 YFIIYHGMKGYERAVLLIP----AWILIFIWFIGLWMAITKRLDNDIIQPALV--GGLVL 377
             +I    + Y     ++     A + + I  + L       L   I+   L        
Sbjct: 129 ASMISLVGRNYGSERAVLLLSSSACLPMMIGALSLGDPFMAVLAVLIVPFILTTWMMANN 188

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +   +   ++         +    +   +   A+      ++  D     V        +
Sbjct: 189 VRGYLFEKILAARDENVLAALETKTIAGQFDAALNNMTHGLFMLDDRHRIVVANERACEL 248

Query: 438 L---------GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           L         G   G +     + L  +     D+    LD  +  +R R          
Sbjct: 249 LHLGDKAQLKGWLLGDVLERGSDALA-LDPERSDSIARQLDLLIEGKRSRALVTI----- 302

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
            ++   +          NG+I   + I  D+T + ++   +L     D LTG+P+R  F 
Sbjct: 303 -SEELLLEFSAN--RRENGEI---VLIFEDVTARVQAERQVLQMVRFDTLTGLPSRDYFA 356

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +     +  + T  +    ++++DI ++K +ND  G   GD +L ++  R+  L     I
Sbjct: 357 ELTHNAVA-AGTAHDRDIGLLLVDIAEFKHVNDTRGHVAGDKLLQAIADRLKGLAGSEAI 415

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ARL G+ F +   +      + +   A+   +            +  + GF     S+ 
Sbjct: 416 AARLMGDEFVVFFHNRVGRSGLEERIRAVHAKLHGTYMADGFTFNMAMNAGFVIVRKSEF 475

Query: 669 TSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
              E+   A+LA+  AK  + GG       +     DR  +K DL  A+   +L L Y P
Sbjct: 476 RLEELQIKADLALSEAKARNNGGCTAFEAEMEGRYLDRQKLKSDLREAIGRGDLSLAYQP 535

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           +       +V  EAL +W HP+ G +    F+ +AEE+ ++  I  F++    RD ++W 
Sbjct: 536 MFTPDGSRVVSCEALARWTHPERGPVPPDIFIQLAEEMGLVTDITRFVVRHACRDCLTWP 595

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            +     + + +N++  DL  +E+   +   ++++  +P+R+ L  +ES +M  P + + 
Sbjct: 596 AE-----VAVSVNLSVLDLHGDEIVAIVAEALAESGLNPARLHLEVTESCLMDEPVKVQA 650

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIP 904
           +L  LR+ G+++ +DDFGT  S LSYL  +P   +K + S +           +L   + 
Sbjct: 651 VLRELRERGMAIAIDDFGTGYSSLSYLDALPVSIIKVDRSFVRDIHVNSRRFKLLLGTVN 710

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGC-DYIQDSHVASPLGFNSILKL 952
           +A+ +E   + + +     ++ +    C D IQ    A+P+  +++  L
Sbjct: 711 LARALELKAVVEGVETAEQLQLINEHNCADLIQGFVFAAPMPASAVAVL 759


>gi|254501283|ref|ZP_05113434.1| hypothetical protein SADFL11_1319 [Labrenzia alexandrii DFL-11]
 gi|222437354|gb|EEE44033.1| hypothetical protein SADFL11_1319 [Labrenzia alexandrii DFL-11]
          Length = 1086

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/576 (22%), Positives = 237/576 (41%), Gaps = 26/576 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                  + A     + +          +    D V  +D     +       +     + 
Sbjct: 496  VASFVDITAEENHKRELEEARTLLRDVIETIPDAVVAFDSHDHLIMCNHAYRSNYADTAP 555

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRV-------RAADNQFHW 494
            ++   +      IH  D   +    D+     R   R    +R        +  D ++  
Sbjct: 556  AIEDGVTFREMLIHGLDIGLYADAGDTPEQQERWLNRRLESYRNPKSILVEKLTDGRWVQ 615

Query: 495  MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
            +  R+      +G +   +G+  D+T  K++ E I   A  D+LTG  NR   +  L+  
Sbjct: 616  IRERVS-----DGGVS--VGVRTDVTSLKRAEEEIRRIADTDSLTGASNRNVMIRELSK- 667

Query: 555  LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARL 612
            +  SA   +      ++D+D++K +ND LG   GD +L     R+   +       +ARL
Sbjct: 668  IAESAKAASESALFGIVDLDQFKSVNDTLGHDAGDLLLQETVARLERFVDRAGGGTVARL 727

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             G+ F  I+               +  ++  P+ L  R I  T S+G A   +   T++E
Sbjct: 728  GGDEFAFIVPGLGGLDGGLSDMPDLHSALCQPVQLGSRTIPSTVSMGLARVPADGDTATE 787

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
            + K+A+LA+Y AK  G N    +     RS      + + L  A+ N ++ + Y P +  
Sbjct: 788  IFKSADLALYQAKASGRNGWRCYDALYRRSLERRQDLAQGLKEAIANDQITVAYQPQVEA 847

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
                +VG EAL +W H     +S +EF+ IAE+  +   +   +++   RD  +  ++  
Sbjct: 848  ATGRLVGFEALARWAH-IGTPVSPAEFVAIAEDAGLGVPLGCAVIKAACRDFANLINEGF 906

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLG 849
             P   + IN+++  L D E  + +   +        R++   +E+V++    E     L 
Sbjct: 907  DPG-RLAINLSTSQLCDPEFPDRVARQLDNLKVLQGRLEFEITENVLLDQRFEEIHRNLV 965

Query: 850  RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            RL + G+ ++LDDFGT    L +L  +P + VK + S +      E    I+R+ I +AK
Sbjct: 966  RLHEFGVLISLDDFGTGYGSLKHLWRLPINKVKIDKSFVENLDTSESAATIVRTTIVLAK 1025

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            ++   ++A+ +        L   GC  IQ   ++ P
Sbjct: 1026 SLGMGVVAEGVETRAQRNFLIDAGCSDIQGFLISKP 1061



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP- 448
           V       + +    +     +  +   V   D         P    + G +   + G  
Sbjct: 249 VARDVTRREALTRRLKFADQIINATRTPVIVGDAEGAIEWVNPAFEELTGYSLKEVAGRK 308

Query: 449 IRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             ++L                + +        ++     ++   Q +W+ + IRP+ N  
Sbjct: 309 PGHFLRCDETDPETSARLTAAISA-----GEPVRETILNQSKAGQKYWLDMEIRPLRNDA 363

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           G +  Y+ I +D+T   +S + +   A  DN+T
Sbjct: 364 GVLTGYMAIESDVTALVESRQRL--QAIVDNVT 394



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 43/142 (30%), Gaps = 9/142 (6%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI---RNWLPY 455
            +    +R    V      V   D   D +   P+   +L ++   M G       W   
Sbjct: 378 ALVESRQRLQAIVDNVTAGVVLHDQNGDIIAANPEACRLLHMSEAQMRGQEIMDPTW-GT 436

Query: 456 IHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           I  + R      + S   +      +     V+  D    W+ +  RP  +S       +
Sbjct: 437 IFPDGRPMGGDEMPSTVVLRTGEPVINQIVGVKRPDGGVQWLRVNARPTRSSPTGEQEVV 496

Query: 514 GIANDITEQ---KKSLEGILCN 532
               DIT +   K+ LE     
Sbjct: 497 ASFVDITAEENHKRELEEARTL 518



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 18/145 (12%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A     +   +   R    +  S D +W+ D           +  I G   G M     +
Sbjct: 128 ALVAAERQKAAAQARLETLLALSSDWLWEADAE-------HRLTRIQG-DDGFMVKQFPD 179

Query: 452 W-----LPYIHINDRDNF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           W        I   D+             +  ++    +   +R  D       +   P  
Sbjct: 180 WTGSKLWEII--EDKAGLDGSPAKFHEVLTNQQAIEGFICELRGRDGSASHFEVHGEPRY 237

Query: 504 NSNGDILRYIGIANDITEQKKSLEG 528
           +  G  L + G+A D+T ++     
Sbjct: 238 DPRGKFLGHWGVARDVTRREALTRR 262


>gi|323495595|ref|ZP_08100668.1| hypothetical protein VISI1226_05708 [Vibrio sinaloensis DSM 21326]
 gi|323319327|gb|EGA72265.1| hypothetical protein VISI1226_05708 [Vibrio sinaloensis DSM 21326]
          Length = 535

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/443 (25%), Positives = 217/443 (48%), Gaps = 11/443 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +     E    NA  D LT +PNR+  ++ +  +++       +   +M++D+  +K+
Sbjct: 91  IDKLHNLAEEEKYNALHDPLTSLPNRKHCIETINCLIE-----GEVPFQLMLLDVVNFKQ 145

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +RI   ++  D +AR+ G+ F II  + ++       A  + 
Sbjct: 146 VNDGMGHFCGDQLLIQIGQRIATYIEKGDFVARIGGDEFVIICPNRDDISS-QTLANQIN 204

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES-FRV 697
            S+    ++   E+T +A IG +S+      + +++  A++AMY AK  G         +
Sbjct: 205 SSLKKTFSIDGFELTTSAIIGISSFPQQGRDAEQVINAADVAMYWAKKSGQEITRFKPSM 264

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S     ++ I   +  A+E  E  + Y PI+    + + G EAL++W  P    IS  +F
Sbjct: 265 SQGARKKLQISRAIDEALERDEFRVYYQPIVCSKLDVVCGYEALMRWIKPDGTTISPIDF 324

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+   I +I  ++L+++A+DI  +       P  I +N+++KDL+   L   +  L
Sbjct: 325 IPVAEQSNKITSITEWVLDKVAQDIQQFFQHGLHCP--IHVNLSAKDLMGRNLENQLTRL 382

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +     + + L  +ES  +        LL +L+ +G  ++LDDFGT  S LS L  +P
Sbjct: 383 SQQYPDFVNAVVLEITESTAINRLRSPEQLLDKLKSLGFKISLDDFGTGYSSLSLLRDLP 442

Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    + E+  +I+ + I +A  +  T++A+ +     ++ L + GCDYI
Sbjct: 443 VDQIKIDRSFLYQLENNERNRSIVLNAISLAHGLGYTVVAEGVEEPEILQILRKYGCDYI 502

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q  + +  +     ++      P
Sbjct: 503 QGFYYSPAIPIEEAIQWSLNHNP 525


>gi|108804911|ref|YP_644848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766154|gb|ABG05036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rubrobacter xylanophilus DSM 9941]
          Length = 545

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/552 (25%), Positives = 243/552 (44%), Gaps = 23/552 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
             ER       + + V   D     + T+  +  +L        G     L  +   +++
Sbjct: 2   REERYRELFRYAPEGVISLDAGGRVLGTSGSLRGLL---PEEPCG--ERLLRLVPPGEQE 56

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                +   +         E  +  +      + + + P     G +   + + + +T +
Sbjct: 57  MVSRAVQGALRGEL----REMEIPCSGG--RRLHLTLVPARTGEGVVGVSVVVRD-VTGR 109

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   E +L  A  D LTG+ NR  FLDRL      +    +    ++ +D+D +K+IND 
Sbjct: 110 RALEEQLLREALMDPLTGLLNRTLFLDRLEHA---ACRSRHAAIALLYMDLDGFKEINDT 166

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD+VL  + RR+   L+  D  AR+ G+ FGI+L     + +    A  + + + 
Sbjct: 167 FGHEAGDEVLREVARRLRSGLRPGDTAARIGGDEFGILLEDSR-ASEALRVARRLLEDLR 225

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSF 700
            PI   ER + V AS+G A+       +  +++ A+LAMY AK RG N  E F    +  
Sbjct: 226 EPIAAGERRVCVAASVGIAAGRGEDRGALHLMRRADLAMYRAKQRGKNRCEVFDPAATPQ 285

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +R  ++E L  A++  E  + Y P++        V +EAL +W H   G +   +F+L
Sbjct: 286 ALERAGVREALQQAMDRGEFTVHYQPVVALARGGRPVAVEALARWRHRHLGLMLPDQFIL 345

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AE+  MI  +   +LE   R    WR       + + +N++ ++L   +L E   A + 
Sbjct: 346 SAEQTGMIVPLGQLVLEEACRTAARWRQSGRR--LRLGVNLSPRELWQQDLPERAAAALR 403

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P  ++L  +ES ++  PE +  LL RL ++GI   +DDFG   S L  LG    D
Sbjct: 404 RAGLGPQDLQLELAESALLQEPEAAAGLLHRLGRLGIGAAIDDFGGARSPLGLLGRFAAD 463

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S + G  + R   AI R++I +A  +   + AK +  E     L  MGCD  Q 
Sbjct: 464 GLKLDRSFVRGLEKSREEAAIARAVIELAHRLGMQVTAKGVETEAQATLLRGMGCDLAQG 523

Query: 938 SHVASPLGFNSI 949
              + PL    +
Sbjct: 524 HLFSPPLPEREL 535


>gi|296392154|ref|ZP_06881629.1| putative signal transduction protein [Pseudomonas aeruginosa PAb1]
          Length = 529

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 211/437 (48%), Gaps = 9/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      +   A QD LTGI NRQ F   L   L      D     +  +D+D ++ +N
Sbjct: 83  ERLGLQATLQLLAEQDPLTGIANRQGFQTLLAARLS---EFDGRGLVLGHLDLDNFRHVN 139

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +++ +  R+   ++  D LARL  + F ++L +  +  +    A  + + 
Sbjct: 140 DSLGHQGGDRLILQVVNRLRGFMENGDSLARLGSDEFALLLDTRRDPQRAERVAERIVEC 199

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +    + +  S+G A   +    +  ++ +A +AM  AK R G     F     
Sbjct: 200 LGEPYWIDGESLLLGCSLGLAHARAD-EGADPLMWHAHIAMQQAKSRQGCTFHVFDERIN 258

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R  R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G ++ SEF+
Sbjct: 259 RGVRSLADLEAELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHGERGLLTPSEFV 318

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  +++ R  RD+  W +   + P+ + +N++ +   D++L   +Q LI
Sbjct: 319 PLAEESGLIVPLGYWVIARALRDM-QWLNGRGLEPLHMAVNLSFRQFQDSQLLPTLQRLI 377

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++   +E+ VM   ++    +  L ++G+  +LDDFGT  S   +L  +P 
Sbjct: 378 EEHGVDARWLEFELTETAVMRRSDQVLQTMQALGQLGVRFSLDDFGTGFSSFVHLNSLPI 437

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G  ++     ++R++I +A N+   ++A+ +      ++L   GCD +Q
Sbjct: 438 TLLKIDRSFVGGMDQRAENFQLVRAMINLAHNLNLEVVAEGVETLRQQEQLRDFGCDQVQ 497

Query: 937 DSHVASPLGFNSILKLL 953
              ++ PL    + + L
Sbjct: 498 GYWISPPLPLAELARFL 514


>gi|117919111|ref|YP_868303.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. ANA-3]
 gi|117611443|gb|ABK46897.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. ANA-3]
          Length = 646

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/439 (23%), Positives = 200/439 (45%), Gaps = 6/439 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I  +  +   +  +   D LTG+PNR + ++ L  +L+     +    +V  + +  
Sbjct: 203 IREIETRTTTESSLEYHKSYDPLTGLPNRLNLINTLANMLEEINRKEK--ISVFYLGLRN 260

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  +GD +L  L++R+         +AR++G  F ++   + +  +      
Sbjct: 261 FKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGAEFVLVQAHKPSQRETHKLLN 320

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +      P  + +  IT+ +SIG A   S  I ++ +L+ A  AM  +K  G      +
Sbjct: 321 QIINCCNSPFGIADFVITIPSSIGIAQAPSDGIDAATLLQKAGAAMTISKAEGIPYSFFN 380

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  S R  ++  L  A+ N+EL L Y P I L   +++G EAL++W +P  G ++ 
Sbjct: 381 QDTQIALSQRYQLESHLVDALRNNELSLHYQPFIELKTHKVIGAEALLRWHNPVLGQVTP 440

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE    I  I  F+L    +    W          I INI+   + +    E +
Sbjct: 441 DRFIALAERNGQIMEIGNFVLHSAIKQAADWCRIL-QRDFKIAINISPVQMRNPRFAEHI 499

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L++      + ++L  +E +++ +   +   + +L+++GI ++LDDFGT  S LSYL 
Sbjct: 500 AELLTLYQLPATALELEITEGMLLQDEHLAHNAIQQLQELGIRISLDDFGTGYSSLSYLQ 559

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              FDT+K +   ++   ++E+   + ++II + K ++  +IA+ +        +    C
Sbjct: 560 KYSFDTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLKVIAEGVENTHQDSFIRSEEC 619

Query: 933 DYIQDSHVASPLGFNSILK 951
           D  Q      P+      +
Sbjct: 620 DLGQGYLYGKPMTPAQFER 638


>gi|99078114|ref|YP_611372.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99035252|gb|ABF62110.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 700

 Score =  413 bits (1061), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 221/464 (47%), Gaps = 14/464 (3%)

Query: 503 SNSNGDILRYIG----IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +  G I R +        D++E K  +E     A  D LT +PNR++  D L   ++ +
Sbjct: 233 RDEVGKIARGVADFSSTLRDLSEAKTHIE---HLALHDQLTDLPNRRALQDYLERSVEQA 289

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             D N R  V+ +D+D++K+IND++G A GD +L+     +   +   D+ AR+ G+ F 
Sbjct: 290 -RDSNARHAVLHVDLDRFKQINDLMGHAAGDQILLHAAEAMQRQIGPDDMTARVGGDEFV 348

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L       K    A  + + I+ P+ +    + V ASIG A   + +   + +L NA+
Sbjct: 349 IVLRGHGTDSKTKAIAKRVIEEISKPVEIEGEFVNVGASIGIAYLAAGETDPARILSNAD 408

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+Y AK  G   V  +  ++       + +  DL + ++N E+   + P +  +  E++
Sbjct: 409 IALYIAKSEGRGRVSFYNDATRARFEGNMALLRDLRIGLDNGEITAFFQPQVDGITNEVL 468

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL +W HPK G +    F+ +A E  +   +   ++      ++ WR      P  +
Sbjct: 469 GFEALARWHHPKRGMLDPGVFITLAFEHGLGDRLTERIVSDAISALLEWRALGLPAP-SV 527

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIG 855
            +N ++K L D  L E +   +      P  I +   ESV+  +  + +   + +L+  G
Sbjct: 528 SVNFSAKQLRDGGLVEYLDDALFAANLQPKDIAIEVLESVLFSDGVDPALNTIAKLQDRG 587

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
             + LDDFGT  + +S L     D +K +   + G  +   +  ILR++I + +N+    
Sbjct: 588 YKIELDDFGTGHASISNLRRFKVDGIKLDKDFVAGVDQDAEQEVILRTMIDLCRNLNIEC 647

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +A+ +  E +I +L  +GC   Q   +A P+  +++   L+  +
Sbjct: 648 LAEGVETEAEIAKLISLGCSRFQGYGIARPMARDAVTSWLETHY 691


>gi|114705233|ref|ZP_01438141.1| hypothetical protein FP2506_09851 [Fulvimarina pelagi HTCC2506]
 gi|114540018|gb|EAU43138.1| hypothetical protein FP2506_09851 [Fulvimarina pelagi HTCC2506]
          Length = 678

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 204/433 (47%), Gaps = 13/433 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   I   A  D+LT + NR+   +    ++  +      R   + ID+D+  +IN  L
Sbjct: 225 EADAHIEFLANHDSLTQLLNRRRMQEETDRVMVTA-RATRERMAYVYIDLDELGEINARL 283

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD++L  + RRI  +    D++AR+  + F I+    ++S  +  FA  +  +I  
Sbjct: 284 GQANGDEILKVIARRIRSVCHKDDLVARIGPDDFAILRRRVSSSNDVRAFARRLSNAIGE 343

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
           PI      I  + SIG A   +     +E++K+AELA    K    + +  F   +    
Sbjct: 344 PIEQCGERIEPSISIGCAMVPTDGRGHTELVKHAELAHCRHKASKADDLVFFEAWMDEDN 403

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R +++  +  AVEN    L Y P++      ++G EAL++        IS SEF+ IA
Sbjct: 404 HHRRLVEAQVRHAVENDGFVLHYQPLVCGTTHRVLGFEALVRLRDCDGNLISPSEFVPIA 463

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    IK I  ++++  AR    W D       F+ +N+++   +D +L   +   I+K 
Sbjct: 464 EARGYIKRIGTWVIQEAARQAAQWPD-----DCFVSVNLSTVQFVDGDLVSVVTDAIAKA 518

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               ++++L   ES+V+   +     L  LR +GI + +DDFGT  S LSY+   PFD +
Sbjct: 519 RIEGNKLELEVVESLVLDRSDDVLEQLKGLRALGIRVAMDDFGTGYSSLSYVWRFPFDKL 578

Query: 882 KFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           K + S M     G  +    ++R+I+ M  ++   ++ + +     ++ L   GCD IQ 
Sbjct: 579 KIDQSFMFAMARGEEKVDQ-LVRTIVAMGHHMGMKVVTEGVEYAEQVEMLRDCGCDQIQG 637

Query: 938 SHVASPLGFNSIL 950
            +   P+  + I 
Sbjct: 638 YYFGKPVPASEIA 650


>gi|298488686|ref|ZP_07006715.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156759|gb|EFH97850.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 781

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 349 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 403

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 404 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 462

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 463 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 522

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 523 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 582

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 583 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 640

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 641 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 700

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 701 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 760

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 761 TASAFEAWIA 770


>gi|77460772|ref|YP_350279.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384775|gb|ABA76288.1| putative sensory box GGDEF/EAL domain protein with PAS/PAC sensor
           [Pseudomonas fluorescens Pf0-1]
          Length = 757

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 129/532 (24%), Positives = 249/532 (46%), Gaps = 9/532 (1%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             + +I    G  +  + G        IH +D+ +    +   +         EFR+R  
Sbjct: 215 YISHNITR-YGHVAADLVGSANWAQTLIHPDDQPSVDAAMGRVLDRHAEGASIEFRLRTG 273

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
              + W+  R  P+ + +G +L   GI  DITE++ + E +   A  D LTG+ NR + +
Sbjct: 274 AGDWRWVENRYIPVRDHDGRLLEVEGIILDITERRLAEEKMNLLARTDGLTGLANRATLI 333

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +RL      +A        V  +D+D +K+IND LG  VGD +L  + +RI   ++  D+
Sbjct: 334 ERLHQA-FAAARRGAAPFAVFYLDLDHFKRINDTLGHPVGDLLLQEVAQRIKSNVRENDV 392

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F I+ +  ++  + A  A  +R +++ P +L    +  + SIG   + S+ +
Sbjct: 393 VARLGGDEFAILQLDVSDPTQSATVATKIRDALSQPYHLTGNALHTSVSIGICLYRSTSL 452

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHP 726
            +  +L  A++A+Y AK  G N  + +        ++R+ + E+L  A+    L L Y P
Sbjct: 453 DADSLLAGADMALYRAKETGRNQYQFYSEQITREVAERITLAEELTTALIQGGLKLDYTP 512

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + +    I+G+ A ++W HP+ G + +S F+  AE+   I  +  ++L+     +  W+
Sbjct: 513 EVDMHSGRILGMAAQVKWQHPRLGLLPASAFVPAAEKTGAIIPLGRWILDHACWQMRQWQ 572

Query: 787 DQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           ++   PP+ + I I+   L    EL   +    ++   +P  ++   +E+ +        
Sbjct: 573 NEGVAPPV-MAIRISLAQLKSGPELIYDVLRTTARWELAPWDLRFDVTEATLAQTKWTHN 631

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            +L RL ++G+ + +DDFGT+ S   YL     + +K + SL+  +   E     LR+I+
Sbjct: 632 DVLPRLSELGVKIAIDDFGTEYSSFDYLKTYRVNHLKLSQSLIDSAAQDEGSANTLRAIV 691

Query: 904 PMAKNIETTIIAKDIY-GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             A+++   I A+ +   + D    +      +Q       +      +LLK
Sbjct: 692 NFARDLAIDISAEGVRPTDRDDALASSAPLKNVQGVCFREAISPEQAARLLK 743


>gi|289669386|ref|ZP_06490461.1| putative signalling protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 788

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 213/436 (48%), Gaps = 8/436 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  +++ +         V+++D++++K++ND LG 
Sbjct: 345 EQRILHQARHDALTGLPNRIWLLERLKEVVEQTVASGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ ++  +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAASVQQNAQFLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSD 703
            L +  I + ASIG A           +L+ A++A              +R         
Sbjct: 463 VLPQARIQLEASIGIALIPDHGADPDTLLRRADIARRQVGTTSAIGASVYRLGQDEQHLR 522

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 523 RLRLTGDLRQAIGGNELTLRFQPKICLRSDRVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I ++  F+L++  R    WR+Q       + IN+++ DL D  L + ++  +     
Sbjct: 583 SGVIHSLTRFVLDQALRCQAQWREQGLELG--MAINLSALDLSDPGLPDFVRGRLEHHAV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                 L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K 
Sbjct: 641 PAQSFTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKI 700

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 701 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENATALALLRGYGCDMVQGYLYS 760

Query: 942 SPLGFNSILKLLKERF 957
            PL    ++     + 
Sbjct: 761 PPLEEAPMVAWCMRQL 776


>gi|325915532|ref|ZP_08177843.1| diguanylate cyclase/phosphodiesterase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538248|gb|EGD09933.1| diguanylate cyclase/phosphodiesterase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 785

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 207/436 (47%), Gaps = 8/436 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  + + +         V+++D+ ++K++ND LG 
Sbjct: 342 EQHILHQARHDVLTGLPNRVWLLERLRKVTEQTVASGGT-AAVLILDLQRFKELNDSLGH 400

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F +I+    ++  +   A  +   +  P+
Sbjct: 401 DFADQVLVEAGRRLAEVVQEPNLVGRLGSDEFMVIVAH-ADASAVQQDAQRLLLQLRHPL 459

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSD 703
            L +  I + ASIG A           +L+ A++A          G  +           
Sbjct: 460 VLPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQVDDVATIGASIYRMGQDEQHLR 519

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 520 RLRLTGDLRQAIGGNELTLRFQPKICLRSDRVEQVEVLVRWHHPTLGPIGPDEFIPLAEH 579

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L+   R    WR Q       + IN+++ DL D  L + ++A + +   
Sbjct: 580 SGVIHPLTRFVLDEALRCQARWRTQGLELG--MAINLSALDLADPGLPDYVRARLEEHAV 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P D +K 
Sbjct: 638 PAQSVTLELTESALMRDVEAALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVDELKI 697

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    A
Sbjct: 698 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENTTALGLLRGYGCDMVQGYFYA 757

Query: 942 SPLGFNSILKLLKERF 957
            PL     +     + 
Sbjct: 758 PPLEQGPFVAWCMRQL 773


>gi|262171292|ref|ZP_06038970.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892368|gb|EEY38354.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 545

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 207/443 (46%), Gaps = 7/443 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  + + +  +   D LT +PNR +  +RL   L   + D     T++   +  
Sbjct: 106 LKEIEQRTVAEDYLDFHRHYDPLTKLPNRVTLSERLQPELKKISDDQQ--ITLIYFSLRN 163

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  VGD +L +L +R+   L    +LAR+ G+ F ++   + N  +      
Sbjct: 164 FKSVNDSYGYQVGDQILSALCQRLSHNLPENWLLARIVGSEFVLVARHKRNQAETKKVIS 223

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + ++  +P N     IT+   +G A        S   ++ A  AM  AK  G      +
Sbjct: 224 RVVQACTLPFNTNNLNITLQCHLGIALAPMDATDSLSFIQRASSAMSLAKKEGIQVSFFN 283

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                   +R+ ++  L  A+   EL + + PII    + +++G EAL++W +P+ GNI 
Sbjct: 284 LAAQKATEERLQLESHLLHALRLGELAVHFQPIIDLKQNGKVIGAEALLRWHNPQLGNIP 343

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ +AE    I  I  F+L +  ++   W       P  I INI+     ++   E 
Sbjct: 344 PDQFIPLAESNGQIIEIGYFVLHQALKNASEWCKLT-TSPFKIAINISPIQFREHRFVEY 402

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++     P  I+L  +E +++ +   ++  L +LR+ GIS++LDDFGT  S LSYL
Sbjct: 403 LKDLMTLYQLPPGAIELELTEGILLQDEHYAQSALAQLRQQGISISLDDFGTGYSSLSYL 462

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      E+   + R+II MA  +   +IA+ +        +   G
Sbjct: 463 QKYSFDTLKIDRSFINQLEYNEQNRELTRAIIAMAHKLNMAVIAEGVEKTYQEDFVRTEG 522

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           C++ Q       +  +  +KLL 
Sbjct: 523 CNFAQGFLYGKAMPVDEFIKLLT 545


>gi|296282624|ref|ZP_06860622.1| hypothetical protein CbatJ_03330 [Citromicrobium bathyomarinum
           JL354]
          Length = 630

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 207/436 (47%), Gaps = 12/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D +TG+ NR    D L   +     D   R  +  +D+D++K++ND+L
Sbjct: 193 RLARKMEVLAHTDIVTGLHNRAGLNDVLAAQVRHGGPDQ--RIALFWLDLDRFKEVNDLL 250

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD VL  + RR+ + L     +AR  G+ F       ++  +    A  +   I  
Sbjct: 251 GHQIGDRVLSEIARRLRDSLPVDAGIARFGGDEFVFFCQ-IDDRAQCERLANRVLDQITR 309

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P+ L    + V++SIG A+     + +  +++ A+LA+YHAK  G   +  F   ++   
Sbjct: 310 PMRLDGERLEVSSSIGIATMPEDGVDADRLMQAADLALYHAKQDGRGKLRFFDAAMTREL 369

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R  I+ +L  A++  EL L + PII L    I   EAL++W HP  G +  +EF+ +A
Sbjct: 370 ANRREIEAELRQAIQRDELSLFFQPIIDLQTGRIRCFEALLRWFHPTKGELRPAEFIPVA 429

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I  +  ++  + A     W +      + + +N++   +        ++  + + 
Sbjct: 430 EETGVIVTLGNWITRQAALACAQWPE-----DVSVAVNLSPLQIKAPGAVLAIEQALREA 484

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +ES+ + + E++   +  L   G+   LDDFGT  S LSY+   PF  +
Sbjct: 485 NLDPRRLELEVTESLFIEDHEQTAAFIDELAAKGVRFALDDFGTGYSSLSYIHKYPFSKI 544

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   ++G+    +  AI+R++  M + ++  I+A+ +  +  ++ +   GC   Q   
Sbjct: 545 KVDRCFVSGADVGPRAHAIIRAVAAMGRGLDMEIVAEGLEEQCQVETVRDAGCTLGQGYF 604

Query: 940 VASPLGFNSILKLLKE 955
            +  +       LL +
Sbjct: 605 FSRAVPDYLAAMLLAQ 620


>gi|241206039|ref|YP_002977135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859929|gb|ACS57596.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 605

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/585 (23%), Positives = 250/585 (42%), Gaps = 38/585 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +       R  LA+  S   VW+  I +D +     +  +          P   W   I
Sbjct: 19  EREFQDLLRRLELALDASQIGVWEHSIEQDGILWDAQMHRLYETGETCRLVPASLWSDAI 78

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +DR+      +  +  R G    +FR+     +   +  R     ++ G    +IG  
Sbjct: 79  HPDDRERAERDFEQAITTR-GAYNSQFRIVLPSGEIRHLRSRAHFYVDAEGLPS-FIGAE 136

Query: 517 NDITE---------------------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            D+T                       ++S   I   A  D LTG+PNR+    RL  + 
Sbjct: 137 WDVTADILLNAELARQKVVAEARALALEESNARIEHVADHDYLTGLPNRRLLDKRLAEL- 195

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
              A        V+ +D+D++K+IND  G A GD VL +   RI   +    ++AR+ G+
Sbjct: 196 --PADKSITTLAVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAAIPANGVVARVGGD 253

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L++  +  ++      +++ +   I   +  +   ASIG +        +  +L 
Sbjct: 254 EFVIVLVNFADLTELKLITEDVQRRLRKKIRFGQEMLQSGASIGVSWS--GDRRARNLLA 311

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            ++LA+Y AK  G N VE F          +  + E+L L +E  E+   Y   +     
Sbjct: 312 ESDLALYQAKKLGRNRVEFFTRQLQEDLRSKRRLAEELKLGLERGEILPYYQLQLDARTR 371

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E++G EAL +W HP+ G ++   F+ IA+E  +   I+  +L+ +  D + W  +    P
Sbjct: 372 EVIGFEALARWKHPEKGVLAPGVFLKIADEHGLAAEIDAAILKSVLEDRLFWLLRGLAVP 431

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLR 852
             I +NI++  L D  L + ++ L       P  I     E++ + + +      +G ++
Sbjct: 432 -RIAVNISASRLADPALLDKLRKL----DIPPGVIVFELVETIFLDDSDEKLLDHIGGIK 486

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           ++GI + +DDFG+  + L  L  +    +K +  L+T   S+ ++  ++ SI+ +AK ++
Sbjct: 487 QMGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLVTEVVSSAEQRRVVGSIVEIAKALD 546

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ I  E     L ++GCD +Q      P       +L   
Sbjct: 547 VEVIAEGIETEAHAVVLAQLGCDGLQGYAFGYPAPAAETDRLFSS 591


>gi|26991939|ref|NP_747364.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24987066|gb|AAN70828.1|AE016727_4 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 555

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 215/441 (48%), Gaps = 9/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   L   L     ++     +  +D+D ++ 
Sbjct: 110 VRERGVLVATLQRLAEQDPLTGIANRQGFQALLNARLA---ENEGRGVALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D LARL  + F +++ +  ++ +    A  + 
Sbjct: 167 VNDALGHQSGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWIDGESLLLGCSLGIAHARAQ-SGADPLMWHAHIAMRQAKGSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  ++    P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALCERGL-EPLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LILEHGVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+   ++ ++I +A N+   ++A+ +  E  +  L   GCD 
Sbjct: 465 PITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLTLLRGFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   V+ PL    ++  L +
Sbjct: 525 VQGFLVSRPLPIGELMAYLLQ 545


>gi|324113381|gb|EGC07356.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 720

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 231/435 (53%), Gaps = 13/435 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A  D L+ +PNR++ ++ L    DL    +    +V+ ID+D +K IND+ G 
Sbjct: 293 EQKARRIARIDWLSRLPNRRALIETLE---DLRKRGECDLKSVVFIDLDGFKDINDIYGH 349

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +++SL + +  L     +LAR+ G+ F +++  + +     +FA  + K +  P+
Sbjct: 350 YVGDQLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYLNNPV 409

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L ER I ++ASIG AS +  + TSSE+ + A++AMYHAK  G   +  +      +   
Sbjct: 410 QLGERSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHYDAELNSARER 469

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+ L +E +E  + Y PI+    + +VG+E L++W     G +   +F+ +AE 
Sbjct: 470 QLTIENDIRLGLERNEFDVWYQPIVDARTQLMVGVEGLVRWKRRPAGELRPDDFIPVAET 529

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I A+  F+L R   D+        +  + + +NI+     D E  + +  ++++T +
Sbjct: 530 SGLIDALGQFVLRRACYDLH------PLSELKLSVNISPAQFRDPEFEDKVADVLNETCF 583

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             SR++L  +E+ V+ NP+R++  +  L+ +G ++ LDDFGT  S + YL    FD +K 
Sbjct: 584 PASRLQLEVTETYVLENPDRAKSAIANLKALGTAIALDDFGTGYSSIGYLRRFNFDAIKI 643

Query: 884 NGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + SL  +  + ++  A++   + +A  +   + A+ +  E  +K L   GCD +Q  + +
Sbjct: 644 DKSLAGLVDNDDQAAALVSGTVRIASALGMLVTAEGVETEKQMKLLRLAGCDRLQGFYFS 703

Query: 942 SPLGFNSILKLLKER 956
            P+   S+++L ++R
Sbjct: 704 QPMPIESLMQLRQQR 718


>gi|254521968|ref|ZP_05134023.1| pas:ggdef domain protein [Stenotrophomonas sp. SKA14]
 gi|219719559|gb|EED38084.1| pas:ggdef domain protein [Stenotrophomonas sp. SKA14]
          Length = 778

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/602 (17%), Positives = 217/602 (36%), Gaps = 18/602 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +        +++ A +    L V+ I    +      G     +     R   A   +
Sbjct: 170 AFSQALLRMATLVRLATLMVAGLSVLAISLMAVALARRVGK---DLTEHESRFRAAFYQA 226

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              +   D     +     +A IL      +     + L      D +     +   + +
Sbjct: 227 NVGMLKLDTDGKVIEANQAMADILDYRRDVLLQMSLHDLLM----DGELVIDGVGR-IDW 281

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R     E R R  D    W       + +S G  L    I  D+++       I  +A 
Sbjct: 282 DRQLRPSELRFRRRDGSLVWGRWSGTGVHSSGG--LSVFAIIEDVSQNHALAREIEHHAS 339

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR+     L   L    +D     ++  I++D +K +ND  G A GD +L S
Sbjct: 340 HDPLTGLINRREIERLLERALLQVRSDGGTH-SLCYINLDHFKLVNDSFGHAAGDQMLRS 398

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               +   ++  D + RL  + F + L               +R        + E    +
Sbjct: 399 FADYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRVLQRVIRNLGQATFPISEGSPQL 458

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL- 713
           + SIG     +     + ++  A+ A Y AK  G N V  F  +    +   ++ +    
Sbjct: 459 SCSIGVVEVGADAPDVNWLMSAADSACYAAKQAGRNRVHCFNENRMALEERRLEAERLQG 518

Query: 714 ---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A+  + + L    I R+ D   +  E L++            +FM   E   M  A+
Sbjct: 519 VSLAMAENRMLLYAQRIARVGDPSYLHYEVLVRMRGTDGSLHLPGQFMPAVERYGMAVAL 578

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  +L  + R +           +   +N++++ + +      +  L+ +     S++  
Sbjct: 579 DRHVLGLLFRHLQVCPAHVRQLGL-CNVNVSAQSIAEPGFLAFVCDLLERNRALASKLCF 637

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + N  ++R  +  ++  G  + LDDFG+  S   YL  +P D +K +G+ +  
Sbjct: 638 EITETAAISNLSQARAFIDAVKARGCRMALDDFGSGLSSFGYLRQLPADILKIDGAFVRD 697

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                   A +R+I  + + ++  ++A+ +        LTR+G   +Q   +  P     
Sbjct: 698 MDTDPVSHATVRAISELGRELQMEVVAEWVETAEVAGALTRLGVQGLQGYAIERPQPLER 757

Query: 949 IL 950
           + 
Sbjct: 758 MT 759


>gi|330964511|gb|EGH64771.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 784

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 208/430 (48%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DN+TG+PNR   ++RL + +            ++ + I+  K I++      
Sbjct: 352 QLAHNALHDNMTGLPNRALVMERLGSSIAADR-----PVALLYMGIENLKTISESSSAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L  + +R+    +  D +ARLS N F ++L +  +       A A+ + ++ P  +
Sbjct: 407 VDQLLRQVGQRLQGNSRPGDTVARLSANEFLLLLDNTTS-DGAVGIADALLRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              +  +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDYALECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQSYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYGVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALIVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
              +    + 
Sbjct: 764 TAAAFEAWIT 773


>gi|270261847|ref|ZP_06190119.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Serratia odorifera 4Rx13]
 gi|270043723|gb|EFA16815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Serratia odorifera 4Rx13]
          Length = 699

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/551 (21%), Positives = 224/551 (40%), Gaps = 10/551 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S D +   +     +         LGL          +WL  + +  R   R  L 
Sbjct: 144 MLDASVDCIKIINNDGSLLHMNKAGCIALGLDENQ-KQFGMSWLGLLPVEIRKRGRKALR 202

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  R  R          + +       + P+++ NG I   + ++ D+T Q+ + + +
Sbjct: 203 KVLNGRNARFAG--LSITPNGKMQHWDNILSPVTDKNGRIQNILCVSRDVTSQRIAEKRL 260

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D+LTG+PNR+ F  +L   +  + +++ L    +++D+D +K +ND LG A GD
Sbjct: 261 LIASEYDDLTGLPNRRLFKKKLKQEMKRALSNNKLLGL-ILLDLDHFKLVNDTLGHAAGD 319

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  L++R+   L     ++RL G+ F +++   ++   I   A      +  PI    
Sbjct: 320 HLLRVLSKRLTAHLNPNSFVSRLGGDEFAVVISDVDDEQDIFKIANNFLLQLESPITHGG 379

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
           + +    SIG A +       SE++K A+ A+Y  K  G   V  F        +     
Sbjct: 380 KALHCGMSIGCAVYPQDAQDPSELMKCADTALYELKDGGRGGVYMFNQQMMDKAKARASQ 439

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
                  V ++ +   Y P + L +  IVG EAL++W  P  G            +  + 
Sbjct: 440 LNHARQIVRDNRIRPSYQPKVNLANGAIVGFEALLRWYSPVNGMQLPDTVSEAFSDYELA 499

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+  M  ++  DI  W        + + +N +  + L +   E     +         
Sbjct: 500 TKISEAMQMKVFADISRWIAAGVDV-LPVSLNASPIEFLRDNYAETFLQRLLMFRIPHHL 558

Query: 828 IKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           I+L  +E     +  +     L  L+++GI + LDDFGT  S  +++   P D +K +  
Sbjct: 559 IELEVTEHAFNKHGSKYVLRALQMLKEMGIRIALDDFGTGHSAFTHIMNYPLDCIKLDCD 618

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    ++     I+ S+  + + +   IIA+ I  E   + L   G  + Q    +  +
Sbjct: 619 FIRRMNDEPAILGIVESMGILGQKLAIDIIAEGIETEQQRQTLCDAGFYFGQGFLFSKAV 678

Query: 945 GFNSILKLLKE 955
               ++ LL+E
Sbjct: 679 EAPKVINLLRE 689



 Score = 47.3 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 5/94 (5%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                    G    S       WL  +H  D     ++    +         E R+R   
Sbjct: 38  FNKGWREYTG--GASFDNEDSGWLKALHPADYVPVHSLWQQAMAT-ASSFVNESRLRHCS 94

Query: 490 NQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQ 522
            +F W ++      +   G+  R+     DI EQ
Sbjct: 95  GEFRWFLLSFNAAKDPLPGEP-RWSLTCVDIHEQ 127


>gi|259415572|ref|ZP_05739493.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348802|gb|EEW60564.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 700

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 227/464 (48%), Gaps = 14/464 (3%)

Query: 503 SNSNGDILRYIG----IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            +  G I R +        D++  K     I   A  D LT +PNR++  + L    DL+
Sbjct: 233 RDEVGKIARGVAAFSYTLRDLSAAKT---RIEHLALHDQLTNLPNRRALQEYLEHCFDLA 289

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
            + ++ R  V+ +D+D++K+IND++G A GD++L    R + + +   D+ AR+ G+ F 
Sbjct: 290 PSSEH-RVAVLHVDLDRFKQINDLMGHAAGDEILRHAARAMQQQIGADDLTARVGGDEFV 348

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L       ++   A  + ++++ PI +    + V AS+G A   + +   + +L NA+
Sbjct: 349 IVLRQAGTDAQVECIANRIIEAVSQPIEIWGDFVHVGASVGIAFLMAGETDPARILSNAD 408

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+Y AK +G      +  ++       + + +DL   ++N E+   + P +  +  E++
Sbjct: 409 IALYVAKSKGRGRASFYNDATRARFEGNMALLKDLRCGLDNGEITAFFQPQVDGVTGEVI 468

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL +W HP+ G +    F+ +A E  +   +   ++      ++ WR +    P  +
Sbjct: 469 GFEALARWRHPERGMLDPGVFITLAFEHGLGDRLTERIVSDAIAALLEWRARGLPAP-SV 527

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIG 855
            +N ++K L D  L E +   +      P  I +   ESV+  +  + +   + +L+K G
Sbjct: 528 SVNFSAKQLRDGGLVEYLDDTLFAAALEPEDIAIEVLESVLFSDGVDPALNTIEQLQKRG 587

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
             + LDDFGT  + +S L     D +K +   + G  +   +  ILR++I + +N+    
Sbjct: 588 YKIELDDFGTGHASISNLRRFKVDGIKLDKDFVAGVDQDAEQEVILRTMIDLCRNLGIVC 647

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +A+ +  E +  +L  +GC   Q   VA P+  +++ + L+ ++
Sbjct: 648 LAEGVETEAEKNKLISLGCSRFQGYGVARPMPQDAVTEWLETQY 691


>gi|315126914|ref|YP_004068917.1| GGDEF protein [Pseudoalteromonas sp. SM9913]
 gi|315015428|gb|ADT68766.1| GGDEF protein [Pseudoalteromonas sp. SM9913]
          Length = 735

 Score =  412 bits (1060), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 222/454 (48%), Gaps = 9/454 (1%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-T 567
           + R I +  D   +  + + +   A  D LTG+ NR   ++R+   +             
Sbjct: 288 VSRQISMVID---RHLARQELEHKALHDELTGLANRSLLIERMKHAILRLNRAKKGTFHA 344

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D D++K IND LG  VGD  L+++ + I + ++  D  +RL G+ F I + + ++ 
Sbjct: 345 LLYLDFDRFKSINDSLGHEVGDHFLIAICKLITQTVRNTDTFSRLGGDEFAIFMENLSHR 404

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ D    ++ +++ PI++    +  + SIG A   +    +  +L+ ++ AMY AK  
Sbjct: 405 DQVNDALARIKTALSDPIDIDGHLLQPSTSIGVAFSDNVNDEAFVLLQQSDAAMYEAKSS 464

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G   V+ F   + +       ++ DL   +E+ E  L + PI  +   +++G EAL++W 
Sbjct: 465 GRGQVKFFNNVMRNKLKTHADLENDLQHGIEHDEFELYFQPIFNITSSDVMGFEALVRWH 524

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S  +F+ IAE+   I  ++L +L+  A+ I  W+ Q +   + + +N++S+  
Sbjct: 525 HPRKGFVSPGDFIPIAEKTGQIINLDLHLLDLAAQHIALWQQQGHRF-LRVTVNVSSRHF 583

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              E  + + A+  K       + L  +ES ++ N E +  ++  L  + + L LDDFGT
Sbjct: 584 ASLEFVDQLHAIYKKHQLPLGSLCLEITESGLIENLELATQIIQGLSPLKVLLCLDDFGT 643

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             S L YL  +P   +K + S +         ++ +I+ +A +++  +IA+ I     + 
Sbjct: 644 GYSALGYLHQLPIHVLKIDKSFIDNLKTTANPLIDAILTLAISLDLIVIAEGIESPEQLA 703

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            L +  CDY Q    + P+     + L+    PL
Sbjct: 704 ILQKTQCDYGQGFLKSKPVTAKEAILLI--HSPL 735


>gi|330881656|gb|EGH15805.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 468

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/442 (23%), Positives = 208/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +     QD LTGI NRQ F       L  +   +     +  +D+D +++
Sbjct: 24  VHERSRLEDSLRRLVGQDPLTGIANRQGF-----QALLTARLAEGGSLALGHLDLDNFRR 78

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            ND LG   GD +++ +  R+   L   D LARL G+ F +++ +     +    A  + 
Sbjct: 79  ANDSLGHQAGDRLILQVVARLKNQLAAGDQLARLGGDEFALLIDTRTTPARAMQLAERIT 138

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++ P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 139 DVLSEPYWVDGESLLLGCSLGIAHSQTRPE-ADPLMWHAHIAMRQAKSMQGCTFHLFDER 197

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L    +VGLEAL++W H   G +  SE
Sbjct: 198 INRNARSLADLEGELRRALRRDELELHYQPRLCLETGRVVGLEALVRWRHQARGLLPPSE 257

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  +Q    P+ + IN++ +   D++L   +  
Sbjct: 258 FVPLAEQSGLIVPLGYWVIFRALRDMQALHEQ-GFAPLHMAINLSFRQFQDSQLLPTLSR 316

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S   +L  +
Sbjct: 317 LIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSSFMHLNSL 376

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L   GCD 
Sbjct: 377 PIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELLRDFGCDQ 436

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   ++ PL    ++  L+  
Sbjct: 437 VQGYLISRPLPIADLVAYLRSE 458


>gi|188587686|ref|YP_001921618.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188497967|gb|ACD51103.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 566

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/547 (23%), Positives = 231/547 (42%), Gaps = 22/547 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +    + D V+ WDI+ +    +  I     L   +       W   I+ +D+D F  
Sbjct: 19  YKMIDDSTDDYVFIWDIISNVFKISSSILCNFDLDGTTTSDIETYWYKIIYDDDKDVFLH 78

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++           +E RV     +  W+  R     + NG  +   G   DI++ KK  
Sbjct: 79  GINKMKLGISNTNVFECRVVNKKGEIIWISFRGSSSKDENGKSVIVFGHITDISKDKKI- 137

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D +TG+ NR  F + +   LD  A  D+    V+V+ ID +K IN+  G  
Sbjct: 138 ---------DFITGLLNRSKFQEDMINFLDKKAEFDS---AVIVMGIDNFKNINEKYGYL 185

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD V+  + ++I  +L     + R+ G++F I     N   KI      +R  + +   
Sbjct: 186 FGDMVIRDVAQKITLMLPKTVNMYRIDGDKFAIFYKDVN-YKKIKLLFNNIRDYMNVEHE 244

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDR 704
           + +++   T S G A   +  ++  E+ + A  AM  AK  G N +E F       +   
Sbjct: 245 IDDKKYFCTVSCGVALHPNDALSCMELFQRANSAMEFAKISGKNRLEFFSEELYKKKIRV 304

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + ++E L  ++ N+     L Y P ++  + E+ G EAL++W+ P+ G IS  EF+   E
Sbjct: 305 LTLQEQLRESIRNNFTGFELYYQPQVKASNHELKGAEALLRWNSPELGQISPLEFIPFLE 364

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  +++    +    W+    +    I IN++   L +      +   I +  
Sbjct: 365 ESGLIVKVGKWVIREALKMCRYWQS--IIEDFKISINVSYIQLKEENFNVYLDQCIKEFE 422

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +ES    + +          + GI++ +DDFGT  S L+YL  +P + VK
Sbjct: 423 IKKNSVILELTESCWAPDFKFLIKKFIDFEEYGINMAIDDFGTGYSSLNYLRNLPVNIVK 482

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +   TEK      +  I+ +  +I+  +  + +  E + K + ++  DYIQ    
Sbjct: 483 IDRSFVRHLTEKSYNFTFIEYIVKLMHSIDIKVCIEGVETEEEFKIVNKVNPDYIQGYLF 542

Query: 941 ASPLGFN 947
             P    
Sbjct: 543 GKPESTE 549


>gi|330879203|gb|EGH13352.1| diguanylate cyclase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 493

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 61  QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 115

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 116 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 174

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 175 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 234

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 235 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 294

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 295 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 352

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 353 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 412

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 413 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 472

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 473 TASAFEAWIA 482


>gi|255021780|ref|ZP_05293811.1| hypothetical protein ACA_1622 [Acidithiobacillus caldus ATCC 51756]
 gi|254968780|gb|EET26311.1| hypothetical protein ACA_1622 [Acidithiobacillus caldus ATCC 51756]
          Length = 883

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/443 (24%), Positives = 218/443 (49%), Gaps = 9/443 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +  +   A +D LTG+PNR  FLDRL    + +   + L   V ++D+D +K++ND L
Sbjct: 318 ELVLRLRNQALRDQLTGLPNRALFLDRLEIARNQTLRHERL-LGVALLDLDGFKQVNDRL 376

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L ++ +R+   L+  D LAR+ G+ FG++L        +      +  ++  
Sbjct: 377 GHDAGDQLLQTVVQRLQAQLRAGDTLARMGGDEFGLLLPGLERLKDLEIVCERLLATLRE 436

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P+ +    + V+ S+G   +       S ++++A+LA+Y AK  G +  +     +    
Sbjct: 437 PLEVHGEAVHVSGSLGVTLYPLDDSDISTLIRHADLALYAAKDAGRDQCKLHTLAMDEAM 496

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   ++  L  A+    L L Y PI+   D  +VG+EAL++ DHP+ G ++ + F    
Sbjct: 497 QNDARMRALLDQALREDRLVLHYQPIVASADG-VVGVEALLRLDHPEKGLLTPAAFFSAL 555

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +   + + I  F+L+   R    W+    +  + + +NI+++ LLD    E +Q  ++  
Sbjct: 556 DHPRIARPIGRFVLDTALRQTAIWQRDGLV--LRVAVNISTRHLLDARFLEDLQEALANH 613

Query: 822 -LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P ++++  +ES  + N   ++ +L   + +G+ + LDDFGT  + L+YL  +P  +
Sbjct: 614 ASVPPEQLEIEITESAPLLNLADAQSVLKSCQDLGVRIALDDFGTGNASLTYLQQLPAHS 673

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +       K +AI+  +I  ++ +   +IA+ +        L ++GC ++Q  
Sbjct: 674 IKIDQNFVCDILDDPKDLAIIAGVITTSRMLGMEVIAEGVERAEYAALLAKIGCSHLQGY 733

Query: 939 HVASPLGFNSILKLLKERFPLVK 961
             + P+    I   +    P+ +
Sbjct: 734 LFSRPIPAEDIPAWITRFRPIHR 756


>gi|222085027|ref|YP_002543556.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221722475|gb|ACM25631.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 446

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 214/430 (49%), Gaps = 10/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LTG+ NR    DR   +L +    D    T+ ++++D +K IND+ G+  
Sbjct: 20  ELQAMAYTDPLTGLGNRHRMRDR-ARLLSVERASDPAPFTIGIVNLDSFKPINDLFGVEA 78

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L  +  R+   +     + R  G+ F  +L      +    F   +R+ ++ P +L
Sbjct: 79  GDEILCQVAHRLKACIPDGATVTRHDGDEFAFVLPLVFERVGAEKFGQMIREVLSAPYDL 138

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-- 705
            +R + ++AS GFA +  +     ++LKN E A+Y +K RG   +  +     +  +   
Sbjct: 139 GDRNVRLSASFGFAIYPFAGEEFDDLLKNTETALYRSKRRGRGQITVYSKEIAQEMKRAT 198

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ L  A+ +  + + + PI+ L    ++G EAL +W+    G +S + F+ +AEE  
Sbjct: 199 QLEQALRNAIISDAIDVHFQPIVSLASSAVLGFEALARWNDADLGFVSPAVFVPLAEERG 258

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I A++  +L + A   +SW  +     +F+  N++S  L+D      + A++ +    P
Sbjct: 259 FIDALSETLLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSSSILAILGRVGLDP 313

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +E+ VM + E +  ++  LR  G+ ++LDDFGT  S L  L    FD VK + 
Sbjct: 314 HRLELEITETAVMSSAETANRIIADLRAAGVRISLDDFGTGQSSLGRLREFIFDKVKIDR 373

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + ++     R +  I+++++ M + ++  ++A+ I    +  +L  +GC   Q  +   P
Sbjct: 374 AFVSRINSDRASEHIVKAVLAMCEGLDLEVVAEGIEDHAEAAKLKSLGCAMGQGYYYGKP 433

Query: 944 LGFNSILKLL 953
               + L+ L
Sbjct: 434 ADSTATLRYL 443


>gi|86359206|ref|YP_471098.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86283308|gb|ABC92371.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 839

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 147/691 (21%), Positives = 271/691 (39%), Gaps = 34/691 (4%)

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
             RW   +        A +      + +     A +A I++    +       Y      
Sbjct: 158 IERWERILVASGACTTALLGFASGYAIFLHDSFAELACISVTMATMVSVVGRNYGSRFAV 217

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
           +         + + +  +         L   +I   L          +   V + +    
Sbjct: 218 DLQTFFC--CLPMIVCSLLAMDFYRGVLSIFLIPFWLT------TRAMANGVREFLYENV 269

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH-----GPI 449
              + I    +R   A+      +   D              +L + +         G +
Sbjct: 270 IARREITIIADRFDTALNNMPHGLVMVDAENRVQVINRKACELLKIGAPERLKDRDLGAV 329

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +       D      IL        G L    R      +   +         ++G  
Sbjct: 330 LRYGARYSFMDASQPELILRQLTQVADGNLS---RTLIHFPEDLSLEFSAS--RRADG-- 382

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + I  D++ + K+ + I+     D LTG+PNR+ F   +   L             M
Sbjct: 383 -GAVLIFEDVSSRVKAEQKIMHMVRFDALTGLPNREYFGQLVQEYLAKHPRKSGP-LGFM 440

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+DID++K +ND+ G   GD +L ++  RI E      IL RL G++F +       S  
Sbjct: 441 VLDIDEFKHVNDMRGHVTGDHLLCAIAARIKEA-CGTAILGRLMGDQFILFFPHAKESPS 499

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-- 687
           +      +  +I     + E    V+ S G+A   SS     E    A+LA++ +K R  
Sbjct: 500 LDLEIRRVHAAIQGHYEVDELTFLVSLSAGYAILESSAFAMDEWSVKADLALFESKSRFR 559

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           GG       +     ++  +K DL  AV    L+LV+ P+ R     I   EAL +W HP
Sbjct: 560 GGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGSRIECAEALARWVHP 619

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G+I    F+ +AE++ +I  I  F+L +   + ++W D      I + +N++++DL D
Sbjct: 620 EKGSIPPDVFIRLAEDMGIISDITRFVLFKACSECMTWPD-----DIAVSVNLSARDLRD 674

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +   ++ +    +R+ L  +ES ++  P+  R +L  LR  GI++ +DDFGT  
Sbjct: 675 ADILLVVADALAHSGLDAARLHLEVTESCLIDEPQAVRAILAELRARGITIAIDDFGTGF 734

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D VK + S +       +R+ +LR  + +A+ +   I+ + +  E  + 
Sbjct: 735 SSLSYLDTLPLDIVKIDRSFVRNIVEDTRRLKLLRGTVNLARELGLKIVIEGVETEEQLA 794

Query: 926 ELTRMGC-DYIQDSHVASPLGFNSILKLLKE 955
            L +    D +Q    + P+   +I  LL++
Sbjct: 795 LLNKHRSTDLVQGYVFSQPVPSQNIP-LLRQ 824


>gi|77747895|ref|NP_637884.2| phosphodiesterase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|77761155|ref|YP_242668.2| phosphodiesterase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991022|ref|YP_001903032.1| Probable signalling protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732782|emb|CAP50976.1| Probable signalling protein [Xanthomonas campestris pv. campestris]
          Length = 787

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 211/435 (48%), Gaps = 7/435 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L++L  ++D +         V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLEQLQQVVDQTVASGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ ++++ P+I+ RL  + F +++    +   + + A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLADVVQAPNIVGRLGSDEFMVVVAH-ADPATVQEEAQRLLLQLRSPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDR 704
            L +  I + ASIG A           +L+ A++A         G  V           R
Sbjct: 463 ALPQARIQLEASIGIALIPEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRR 522

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  DL  A+  +EL L + P I L  +++  +E L++W HP  G I   EF+ +AE  
Sbjct: 523 LRLTGDLRQAIGGNELTLRFQPKISLRTDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEHS 582

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  F+L+        WR Q       + IN+++ DL D  L + ++  + +    
Sbjct: 583 GVIHPLTRFVLDEALHCQSQWRAQGLELG--MAINLSALDLSDPGLPDFVRGCLQRHAVP 640

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K +
Sbjct: 641 ATSVTLELTESALMRDVEFALHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKID 700

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    E      I+RS I +  N+  ++IA+ +  +  +  L   GCD +Q    + 
Sbjct: 701 KSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSP 760

Query: 943 PLGFNSILKLLKERF 957
           PL    +L     + 
Sbjct: 761 PLEEKPLLAWCMRQL 775


>gi|71735503|ref|YP_276075.1| diguanylate cyclase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556056|gb|AAZ35267.1| diguanylate cyclase, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 784

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|226941809|ref|YP_002796883.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Laribacter hongkongensis HLHK9]
 gi|226716736|gb|ACO75874.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Laribacter hongkongensis HLHK9]
          Length = 702

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 133/504 (26%), Positives = 234/504 (46%), Gaps = 20/504 (3%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQ 522
              +L   V   R R   +F +R    +     +      +    +   +    D +TE+
Sbjct: 200 VLFVLFRMVINSRLRQLVDFALRFGRGERVHARLEGG---DEIAQLSHSLDSMADQLTER 256

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    I   A  D LTG+ NR +F+DRL   L  S         +  I+ID+++KIN+ 
Sbjct: 257 ER---HIRKLAETDALTGLMNRNAFIDRLQAELWQSRQ-----LALFFINIDRFRKINET 308

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD VLV+  R IG+L       AR   + F + + +         FA  + + + 
Sbjct: 309 YGHRIGDAVLVAQARNIGQLAGETGWCARQGVDEFLLAMPALA-LEDANGFARRIHERLG 367

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +P+ +    +   +SIG A       T+ E+L N  LA+  AK  GGN V SF  +    
Sbjct: 368 LPMTVSGVTLQANSSIGMALLPDHASTAEELLINTGLAVRQAKEEGGNCVVSFSAALNAR 427

Query: 703 DRVM--IKEDLCLAVENSELYLV--YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 I+  L  ++    L L   Y P + L +  + G+EAL++W+HP  G +   EF+
Sbjct: 428 HERQNVIEAGLRESLLQDGLGLWLAYQPQLNLRNGRVAGVEALLRWNHPTLGMVPPDEFI 487

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I ++  +++ER    + SWR+        + IN+++  L D  L + +Q L+
Sbjct: 488 QVAESCGLILSLGDWVMERACAQLASWRELYGY-DFIVAINLSAAQLCDPLLVDKLQELV 546

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +      RI+L  +ES+++ +  ++  +L  L  IGI L++DDFGT  S L+ L  +P 
Sbjct: 547 VRYALPADRIELELTESMLVEDMNQALGVLHALEDIGIQLSIDDFGTGYSNLAQLRQLPI 606

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +        A  I+ +++ MA+ ++ T++A+    +     L  +GCDY+Q
Sbjct: 607 KRLKIDRSFIQDIETNSNARGIVDTVMAMARTLDMTVVAEGAETDAQAVYLAELGCDYLQ 666

Query: 937 DSHVASPLGFNSILKLLKERFPLV 960
              +A  L    +   L    P +
Sbjct: 667 GWWLARGLPPAELETWLSGFRPTL 690


>gi|289628153|ref|ZP_06461107.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330871232|gb|EGH05941.1| diguanylate cyclase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 784

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|220911920|ref|YP_002487229.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter chlorophenolicus A6]
 gi|219858798|gb|ACL39140.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrobacter chlorophenolicus A6]
          Length = 730

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/596 (22%), Positives = 242/596 (40%), Gaps = 38/596 (6%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L+      H  AT   +  +       +  +  + D +                 T+  +
Sbjct: 141 LLSVRATSHRQAT---NADLRHAMSLLTSTLESTADGILVMGSNGTVAGYNDQFLTMWNI 197

Query: 441 ASGSMHGPIRN-WLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
               M G   +  +  I     D   F   L                    D        
Sbjct: 198 PRKLMEGDSADPVMQRITSQLTDPGTFLARLMEVQSNTTAESHDVVDF--KDG--RTFER 253

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILC--------------NAFQDNLTGIPN 543
             RP      DI+  +    D+T ++++ E                   AFQD LTG+ N
Sbjct: 254 YSRPHKVGE-DIVGRVWSFRDVTPRRRAQEQAHQAMLDLAEQAEKLRVMAFQDPLTGLAN 312

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F D L   L            + +   D +K++ND+LG   GDD+L+ + RR+   +
Sbjct: 313 RAVFNDALAGSLQEPRLKAVDVLLLDL---DDFKEVNDLLGHQAGDDMLIEVARRLRGCV 369

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
              D++ARL G+ F ++L +  N  +IA     + + + +P+ +  R +  + S+G AS 
Sbjct: 370 PTADVVARLGGDEFVVLLTACPNVDEIAAC---IVRCLHVPVTISGRALRPSLSLGVASR 426

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELY 721
              ++  SE+L+ A++AMY AK  G N    F      +      ++  L  A++  E+ 
Sbjct: 427 GREEVGPSELLRQADIAMYAAKAAGKNRFLRFHPDMMAALVQRTDMESGLQFALQGGEIT 486

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + + PI+     ++V  EAL +WD    G +  S+F+ +AE   +I+ I L ++ +    
Sbjct: 487 VDFQPIVSHRSGQVVQFEALARWDRGA-GRVPPSDFIPLAERTGLIRDIGLEVMSQAMAQ 545

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W      P   + +N++   L +++    +  L      +  ++ L  +ESV     
Sbjct: 546 LADW--LGEDPQRSLAVNVSGVQLQEHDFAAKVLGLAETRGVAARQLVLEVTESVFFHAD 603

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAIL 899
                 L  LR  G  + LDDFGT  S L  L  +P DTVK + + ++   +  +R+ IL
Sbjct: 604 CDLIRQLSTLRDAGARVALDDFGTGYSSLGRLQDLPVDTVKIDKTFVSMVRTGSERLPIL 663

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            S+I MA ++  T+ A+ I        LT + CD +Q    + P     + K L+ 
Sbjct: 664 SSMINMAHSLGLTVTAEGIETASQADYLTALDCDALQGYLFSLPEPAARLEKALRR 719


>gi|78777352|ref|YP_393667.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497892|gb|ABB44432.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 856

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 122/452 (26%), Positives = 225/452 (49%), Gaps = 15/452 (3%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            ++   IG A +   QK+++      +F D+LT + N++ F + L   L  S        
Sbjct: 411 NELSGDIGFAMNSFHQKEAINQ---LSFYDSLTYLANQKLFENHLEQSLMDSEKYLKY-G 466

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID D +K +ND++    GD VL  +++R+ +  K   ++AR  G++F I+L + + 
Sbjct: 467 AVLFIDFDNFKDVNDLINKGAGDTVLKEISQRLIKKAKTASLIARHGGDKFLILLENISK 526

Query: 627 SLKIADFAIA-----MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +   +      +++    P  + E  + +T SIG A +     +++++L  AE AM
Sbjct: 527 DENQSAMIVKKSVIEIQEITKEPFIVDENSMYLTCSIGVALF-LDNTSANKLLNQAEYAM 585

Query: 682 YHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             AK  G N V  +  S       R  + + L  ++  +EL+L Y       D+ +VG+E
Sbjct: 586 RTAKRDGKNTVRFYNESLQDMTKQRFQMIQYLKESILKNELFLNYQKQFD-KDKNVVGVE 644

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G +S +EF+ +AEE  +IK I  F+LE    +++ W+         I +N
Sbjct: 645 ALVRWNHPTLGLVSPAEFIPLAEESGIIKEIGAFVLESATSELLLWKSDRIKKEWRISVN 704

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++     ++   + +  LI+     PS++++  +E V++ N E++   +  L+  GIS +
Sbjct: 705 VSPLQFKESSFVDTINKLITSKNLDPSKLRIELTEGVLIENKEKAIDKIRDLKNFGISTS 764

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S LSYL  +  D +K + S + G  +     AI+ SII + +     +IA+ 
Sbjct: 765 IDDFGTGYSNLSYLKNLQIDELKIDQSFVFGLGQNSSDRAIVNSIIMLGEEFNFEVIAEG 824

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +      + L  +GC+Y Q   +A P     +
Sbjct: 825 VETIEQFEILKELGCNYFQGYLLARPCKAEEL 856


>gi|186470841|ref|YP_001862159.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
 gi|184197150|gb|ACC75113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phymatum STM815]
          Length = 981

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/954 (16%), Positives = 329/954 (34%), Gaps = 53/954 (5%)

Query: 21  FLLWMVSPSFAIEPINISSSDRVL-DLTSITR----IYVNQGEDFQVFTAADIDGISRRI 75
           F +++     A+  I +   +    D+    R    +  +         A      +   
Sbjct: 20  FSVFIAPFVIALGSIAVMLWEPHQFDMGGTVRLTFPVIADSSASLSPANAIVRLRDAAPT 79

Query: 76  EVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEG 135
              ++ +     W +     T D+  E    +               G+   +       
Sbjct: 80  ARFSTHLAETPFWFMLT---TPDATREEPAYIDLPSRHAQTLSCWRAGASLTLLGAGDR- 135

Query: 136 FSLDRIPNSDSDVFRITIN---PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYR 192
                   S+   F + ++   P A +      S P      +   +  + T   F    
Sbjct: 136 HGTSGKVRSNKAGFALRVDDAVPHAPILCRATFSGPAYITASVSNEDTLETTALDFHQSA 195

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI 252
            +I G    LAIF+ +  ++NR    +   A     L   +   GF ++ +        I
Sbjct: 196 ALITGGLLTLAIFVFVTAIINREWTYVIFAAWLVGNLRLSANAMGFDTEWLGRIVPPDHI 255

Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312
                E   ++  ++   +++   R   K   + +S  A       +     ++      
Sbjct: 256 AFLR-EFTFAAYYLLTTTLFVELFRRELKAIGLRWSLHAVRYGGCVLMAAAFVLDYRHFI 314

Query: 313 ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV 372
             L     +    + Y   +   +A      W +  +  + +            ++    
Sbjct: 315 PVLWISASFCILVLTYFLFQLVVKARSRTVLWYVASMGIVLIATLSEVLAAALGLKALEG 374

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTT 430
               ++  L    +    +A     +       +  L      +   ++  +     V  
Sbjct: 375 KLSPVVTALSSSMLCAFAIAERMREERERRREMQIELRNTYDVTPIGLFTLNADNCFVRA 434

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS------FVGYRRGRLQYEFR 484
            P + T+LGL     H     W  Y       +   +L+        +    G       
Sbjct: 435 NPALHTMLGLPLE--HYVTHRWADYFAPGAEGDLYDLLERDESASIEIDGAAGT------ 486

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              AD +       +R +  +NG      G   D+T++ K++  +   A  D LTG+ NR
Sbjct: 487 --RADGR----RYSLRAIR-ANG---FIEGSLEDVTDRSKAIARLHFLAEHDPLTGLLNR 536

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                 +   +D   +  N    +  +D+D++K  ND+ G   GD++L  +  R+ E L 
Sbjct: 537 LG----IEHAIDR-QSSQNGPWALAYLDLDRFKVFNDLFGHGTGDEILRHVGARLVERLG 591

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               + R+ G+ F  +L +      IA     +    + P+ +  R   V  SIG    T
Sbjct: 592 PHVPIGRIGGDEFVCVLSNMTIDEAIARCREIVDALNSAPVPVNTRAFQVRGSIGVVECT 651

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL---- 720
                  + L  A+ A   AK  G   + + R  +   +    + +L  A+    L    
Sbjct: 652 E-GERVLDALAYADRACRAAKRGGSARLVALRRGAPAFEERTAEINLIEALGQRRLPEGL 710

Query: 721 YLVYHPIIRLM-DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           +LV  PI+ +    + +  E L++   P     ++ + +  AE+   I  I+ ++L    
Sbjct: 711 FLVMQPIMSMREPTQALDFEVLLRMRSPDGAVATAGKLIAAAEDSGTIVEIDRWVLSTTL 770

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             +   R        F+ +N++   L D      +  L+S+       + +  +ESV + 
Sbjct: 771 AWLSDNRASLINTR-FVCVNLSGGSLNDEHFLGELFDLLSRYEDVVHLLCIEITESVALH 829

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           + E +   + R+  +G  + +DDFG   + L YL  +  D +K +G  +         IA
Sbjct: 830 DLEHTERFIARVHDMGAKIAIDDFGAGHTSLRYLKKLSADALKIDGEFVRTMCNHPADIA 889

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           I+ ++I +A N+    IA+ +     ++ L  +G DY+Q   +A P   ++IL 
Sbjct: 890 IVEAMISLAHNLGMRSIAEWVEDLETLRALDELGVDYVQGFAIAKPQQTDAILA 943


>gi|108801710|ref|YP_641907.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. MCS]
 gi|119870861|ref|YP_940813.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. KMS]
 gi|108772129|gb|ABG10851.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. MCS]
 gi|119696950|gb|ABL94023.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Mycobacterium sp. KMS]
          Length = 623

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 210/457 (45%), Gaps = 9/457 (1%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
               +     +   +  +  + E +   A  D+L+G+ NR++ +  L   L         
Sbjct: 151 EQNALQAIATLFAQLQARIAAEEQLQYLAEHDDLSGLLNRRALMAHLGLRLAEGQPGP-- 208

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +V+ +D+D+ K +ND LG + GD  +     R+    + P ++AR+ G+ F ++    
Sbjct: 209 -VSVLFLDLDRLKTVNDYLGHSAGDQFIKMFAERLRAGTEKPAVIARVGGDEFVVVPDEP 267

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            + + +  FA  ++  +   + +    +  T SIG A  T    T+S++L+ A+ A   A
Sbjct: 268 MDVVAVESFARRLQTWLQRRVVIDGEMLARTVSIGVAVGTPGDDTTSDLLRRADQAALSA 327

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE----LYLVYHPIIRLMDEEIVGLEA 740
           K  GG+    F         +    +L L     E    L L Y P I +   +++G EA
Sbjct: 328 KSTGGSKTAVFTTEMASQHAIRNDIELHLEGVIDEASSALVLHYLPEIDMRTGKVLGTEA 387

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G +    F+ +AE + +   +   ++     D   WR +       + IN+
Sbjct: 388 LVRWRHPTRGLLLPESFIGVAESINLAGKLGRLVMRSACADFARWRSRRTAGDAILRINV 447

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L+ +     +   + +     S + L  +ESVV+ + E +R  L  L+++G+ + +
Sbjct: 448 SPVQLVSDGFAATVAGTLDEFGVDGSAVCLEITESVVVQDIEATRHTLAALKEVGVRIAI 507

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S+L++L  +P DTVK + S +     +   +AI+R+I+ +A   E  ++A+ +
Sbjct: 508 DDFGTGYSVLTHLKSLPVDTVKIDRSFVRDLGASPGDLAIVRAILALADAFELEVVAEGV 567

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 K L  +GC   Q   ++ P+   ++  L +E
Sbjct: 568 ETVAAAKTLLELGCPRAQGFMLSRPVDAAAMEALFRE 604


>gi|289649881|ref|ZP_06481224.1| diguanylate cyclase, putative [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 784

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|329913047|ref|ZP_08275873.1| sensory box/GGDEF family protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545444|gb|EGF30653.1| sensory box/GGDEF family protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 859

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 226/435 (51%), Gaps = 9/435 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I   A+ D LTG+PNR  FLDR+  +L   A+    R  +++ID++++  IND  G 
Sbjct: 426 EERINYLAYFDALTGLPNRALFLDRVAQLLPYDASVTAERIALVLIDVERFHHINDTYGR 485

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI-AMRKSIAMP 644
           A GDDVL  L RR+ + L  P  LAR++ + F  IL    +  ++       +   +  P
Sbjct: 486 AAGDDVLRVLARRLRDYLADPGYLARINADSFAFILKDYRSETEVVHLIEGELAGVLGKP 545

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSD 703
           + + ++ I ++   G A + +    S  +L+NAE AM  A+         +  +++  ++
Sbjct: 546 LQMTDKAIRLSVRAGIALFPNDGSDSDSLLRNAEAAMKDARAAKVRYLFYTAEMNARTAE 605

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++ ++  L  A+   +  L Y P + L   +IVG+EALI+W+ P  G +S  +F+ + E+
Sbjct: 606 KLSLENRLHRALAEQQFVLHYQPKVDLRSGQIVGMEALIRWEEPGVGLVSPFQFIQVLED 665

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  + ++++E   R    W++   + P  I +N++   + + +    + A+ ++   
Sbjct: 666 TGLIVEVGIWVIEEAHRQCARWQEAGLVVP-RIAVNVSQLQIREKDFVARVLAVQAQHPC 724

Query: 824 SPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              R+++  +ES+ M +     +R  L  LR+ G+++ +DDFGT  S L YL  +P DT+
Sbjct: 725 P--RLEIEITESLFMDDANSHLARDKLVALREAGMTVAIDDFGTGYSSLGYLARLPIDTL 782

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T    +   +AI+ +II +A  ++  ++A+ +       +LT+MGC+ +Q   
Sbjct: 783 KIDRSFITAMSASADNLAIVATIISLAHALKLDVVAEGVETVGQRDQLTQMGCNQMQGFL 842

Query: 940 VASPLGFNSILKLLK 954
            +  +    +  +L+
Sbjct: 843 FSPGVRAEVMAGMLE 857



 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 39/148 (26%), Gaps = 5/148 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           + +   +              R    +  +   +  +D              + G     
Sbjct: 115 SALLRAIDEARGRAARLHAESRFRDLIEYAPHAIVVFDQHGRIDIVNAQAEALFGYPRSV 174

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           M G     L         ++ T L          + +E   R  D       + + P+  
Sbjct: 175 MLGADGKMLVT---AAFPHWHTALPDSQAAPGSSISFEVIARRCDGSCFPAEVSLSPLQT 231

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCN 532
           + G  +    +  D++E+K   E +   
Sbjct: 232 AGGHCIS--SVIRDLSERKAQEERLARM 257


>gi|320325577|gb|EFW81639.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327137|gb|EFW83151.1| diguanylate cyclase, putative [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 784

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|254506584|ref|ZP_05118725.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus 16]
 gi|219550457|gb|EED27441.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus 16]
          Length = 533

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/443 (24%), Positives = 212/443 (47%), Gaps = 11/443 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +     E    NA  D LT +PNR+  ++ +  ++     D+ +   ++++D+  +K+
Sbjct: 91  IKKLHHLAEEEKYNALHDPLTSLPNRKHCIETINCLI-----DNQVPFHLLMVDVVNFKQ 145

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +LV + +RI   +   D +AR+ G+ F +I  ++N+   I   A  + 
Sbjct: 146 VNDGMGHFCGDQLLVQIGQRIASNITRGDFVARIGGDEFIVICPNQNDI-AIQSLANTIN 204

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
             +    ++   E+T +A +G + +      + +++  A++AMY AK  G         +
Sbjct: 205 IELKKTFSIDGFELTSSAIVGISRFPDQGKDAEQVINAADMAMYWAKRSGRESAKFDPSM 264

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  +  + Y PI+      + G EAL++W  P    IS  +F
Sbjct: 265 NQGARQKLEISRAIDEALEKQQFRIYYQPIVCSKLNLVCGYEALMRWVKPDGTTISPVDF 324

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+   I +I  ++L+ +  DI ++       P  + +N+++KDL+   L   + AL
Sbjct: 325 IPVAEQSNKINSITEWLLDHVVADIEAFHQHGIHCP--VHVNLSAKDLMGRSLENQLVAL 382

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++T      I L  +ES  +         L  L+ +G  ++LDDFGT  S LS L  +P
Sbjct: 383 ATRTPSLTDSIVLEITESTAINRLRSPEKRLEALKSLGFKISLDDFGTGYSSLSLLRDLP 442

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      E+  +I+ + I +A  +  +++A+ +  +  +  L + GCDYI
Sbjct: 443 VDQIKIDRSFLYQLERNERNRSIVSNAISLAHGLGYSVVAEGVEQQEILHILNKYGCDYI 502

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q  + +  +     +       P
Sbjct: 503 QGFYYSPAMPLEDAILWTLNHNP 525


>gi|330889512|gb|EGH22173.1| diguanylate cyclase [Pseudomonas syringae pv. mori str. 301020]
          Length = 784

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 213/430 (49%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR       + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQ--RDLVLQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|302875338|ref|YP_003843971.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|307688918|ref|ZP_07631364.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
 gi|302578195|gb|ADL52207.1| diguanylate cyclase/phosphodiesterase [Clostridium cellulovorans
           743B]
          Length = 774

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 215/436 (49%), Gaps = 9/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +   +   + +D LTG+ NR+ F++ + ++++ S   ++ + +V+ ID+D++K IN
Sbjct: 335 ELVNANNILENLSKKDVLTGLYNRRYFIEYIDSLIEAS---ESSKFSVICIDLDRFKAIN 391

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD VLV +  R+ +       ++R  G+ F I++  +N+   +  +   + + 
Sbjct: 392 DAHGHEIGDKVLVEVAARLQKWCPSDVKISRAGGDEFTILVEGDNSFYSLRLYCEEIVEL 451

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRV 697
               I +      V  S+G AS+ +  +    ++K A++AMY+ K              +
Sbjct: 452 CRKTIEISPYTFHVGVSLGIASYPNDSLDRETLMKYADIAMYNCKKNYIGPRYTFFDDTI 511

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S+    +  I+  L     + E  L Y P  R+ D+ +VG+EAL++W++PK G IS  EF
Sbjct: 512 SAEIQRKHSIELLLQEIDFDKEFQLFYQPQYRISDDSLVGMEALLRWNNPKNGFISPGEF 571

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  +I  I  +++    + I  W ++     + + IN++ K ++ ++  E +   
Sbjct: 572 IPIAEETFLIMKIGEWVINEALKQIRIWNEKY-NLNLVVGINMSPKQIITDKFVENLMNK 630

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I     +P  I +  +E+  M + E    +L +L  IGIS+++DDFGT  S LSY+    
Sbjct: 631 IEAKKITPKWIDIEITETSAMSSNESMEKILEKLATIGISISIDDFGTGYSSLSYIKRFD 690

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K    L+         + I+++II MAK +    IA+ +  E  ++ L  + CD I
Sbjct: 691 IDRLKIAKELVDNIYNDHNTLLIVKAIIMMAKGMGLKAIAEGVEEESQLEMLKELECDEI 750

Query: 936 QDSHVASPLGFNSILK 951
           Q      P+      +
Sbjct: 751 QGYLYGRPVSAEVFEQ 766


>gi|295676205|ref|YP_003604729.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
 gi|295436048|gb|ADG15218.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. CCGE1002]
          Length = 604

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/559 (22%), Positives = 251/559 (44%), Gaps = 23/559 (4%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D++   D     +  +      +G     +     +    +   D      +L    
Sbjct: 47  GAVDLLAHVDDALRFIYVSDASLRFIGYHREYLKTATLH--DLVAPADVPRLDALLKQAA 104

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +    +  +    + + + +R + +S+  +  Y     D++  + + E  L  
Sbjct: 105 ASGNVE-KATLGLVKS--LTYPITVELRVVRSSHDGVDGYAIAGFDVSSWRATEER-LTQ 160

Query: 533 AFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           A   D LT +PN+   +  L      +         ++++D+D Y+++N  LG   GD++
Sbjct: 161 ALHLDRLTSLPNQSGLVHALLDAQQKADAH-GTPVALLLLDLDDYQRVNRALGYDAGDEM 219

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK----SIAMPINL 647
           L   +RR+  +    + +AR++ + F I++    +    A  A A+ +    +I  P   
Sbjct: 220 LRDTSRRLLNMTSPNETIARIASDEFAILVKPAASRTDAAAAAEALARRLLTAIQQPYVF 279

Query: 648 LEREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             +++ ++ASIG A +        +    + +L+ A+ A+  AK  GGN +  +    + 
Sbjct: 280 KGQQVHLSASIGIALYPDVRHANDTGGHDTHLLRWADHALLQAKAAGGNTLAFYVPDDNP 339

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++R+ ++ DL   V N E  L + PI       +VG+EALI+W HP  G +  S F+ 
Sbjct: 340 ADAERLKLEADLYDGVRNGEFSLHFQPITSSRTRGVVGVEALIRWTHPVHGLVPPSMFIP 399

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE + +I  +  ++++     +I W D   +P  ++ +N++ +   D    + ++  I 
Sbjct: 400 LAESIGLINFLGNWVMKVACMQLIQW-DAKGIPLQYVAVNVSPQQFRDPRFKDSVREAIE 458

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   P R+    +ES++M +P  ++ LL  L  +GI   +DDFGT  S L+YL   P  
Sbjct: 459 LTGIDPRRLVFEITESLLMHDPAHAKGLLEDLTAMGIRFAVDDFGTGYSSLAYLQRFPLA 518

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ 
Sbjct: 519 KLKIDRSFVENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEAQRTLLTEMGCDHIQG 578

Query: 938 SHVASPLGFNSILKLLKER 956
             V   L    + +  + R
Sbjct: 579 WLVCKALPSEELAQRFETR 597


>gi|297585077|ref|YP_003700857.1| extracellular sensor-containing diguanylate
           cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297143534|gb|ADI00292.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus selenitireducens MLS10]
          Length = 778

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 196/437 (44%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              E I    + D LT + N   FL  L   +      +     + +I ID +K+ N + 
Sbjct: 345 AMHEKIRNLTYYDPLTKLYNFNGFLIELPFRVKKLTQKEGYT-AIALISIDDFKRFNSLR 403

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+++L     R+   ++  +++ R  G+ F I+++  N +  I      + ++   
Sbjct: 404 GYQAGNEILRKFADRLTMYMQEGEMVGRYFGDEF-ILVMHANTTDNIERRIRTIWQNAMT 462

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
            +   E    +  SIG         T+ E L  A +A   AK  GGN    +  +  R  
Sbjct: 463 NLADSEHGWNLKMSIGAVITKEIYGTADECLAQANMAKLQAKREGGNRYRFYAKAMTRVI 522

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   ++ +L  A+E  EL L Y PI+ + + E+ G EALI+W HP++G++S  + + IA
Sbjct: 523 EEDQRLENELNYALERGELELYYQPIVDVGNGEVYGNEALIRWTHPEYGSVSPVKMIEIA 582

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  I  ++L+   R    W+DQ    P+FI INI+            ++  I  +
Sbjct: 583 ERSGQIVEIGEWVLKEGLRQNRLWQDQ-GFKPMFISINISVIQFEQPNFIRSVKKAIEDS 641

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I+L  +E+  M   +     +  L+ +G+S+ +DDFGT  S L+Y    P  T+
Sbjct: 642 GLDPKWIQLEITETTAMSLGDDKIEKMAALKGLGVSIAIDDFGTGYSSLAYFTQFPITTL 701

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + ++      K   I  ++I MA+ +    +A+ +        L  +GC YIQ  +
Sbjct: 702 KIDRTFISRLGKDPKAEMITEAVISMAETLRIQTVAEGVETAEQAAFLKELGCTYIQGFY 761

Query: 940 VASPLGFNSILKLLKER 956
            A P+  +    L  ++
Sbjct: 762 FAKPMPPSKAENLFTKK 778


>gi|254499426|ref|ZP_05112087.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12]
 gi|254351325|gb|EET10199.1| hypothetical protein LDG_3465 [Legionella drancourtii LLAP12]
          Length = 1066

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 211/431 (48%), Gaps = 7/431 (1%)

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               A  D LTG  NR              + +   +  ++ +D+D +K IND +G  VGD
Sbjct: 635  YYQATHDPLTGFANRNLLFQIFQQSASRLSREAK-QLAIIFLDLDYFKTINDTMGHEVGD 693

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +L+  + +I   L+  D+  RL G+ F I+L S + S+++      + + +A P+ +  
Sbjct: 694  KLLIYFSEQIKTCLRAGDLPVRLGGDEFVILLDSLDESMQVKVIIDKIYQQLAAPVIIQG 753

Query: 650  REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
              I ++ S G + +         +LK A+ A+Y AK  G N  + + V  + +      +
Sbjct: 754  HTIHISTSAGISLFPKDATDIQGLLKQADTALYRAKELGKNQYQFYSVALTQYIQQNHHL 813

Query: 708  KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            + +   A+ N E  L Y PI  L+ E I+ LE L++W HP  G + + +F+ + E+   +
Sbjct: 814  ETEFENALANQEFCLFYQPIFDLVSERIISLEVLLRWQHPTKGLLEAKQFIQLLEKTPFM 873

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              +  ++L    + + SW+++ ++P + I +N+++    +  + + +  ++++T   P  
Sbjct: 874  LPVGEWVLRTACQQVKSWQNK-DLPRVPIAVNLSALLFENQFISQLIADILAETQLEPVY 932

Query: 828  IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            ++L  +ES+++ +    +  +  L+ +GI+L +DDFG   S L+YL  +P   +K + S 
Sbjct: 933  LELELTESILVESANIIKE-MEALKNLGINLVIDDFGKGYSCLAYLTRLPLSKLKIDRSF 991

Query: 888  M--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +      E+   IL +II +A  ++  +IA+ +     +  L     D +Q  + + PL 
Sbjct: 992  INKNQLKEQDKIILEAIIELAHRLQLQVIAEGVEEISQVNLLRTQQVDAVQGYYFSRPLS 1051

Query: 946  FNSILKLLKER 956
             N    LL + 
Sbjct: 1052 VNDCEHLLNDE 1062


>gi|294631547|ref|ZP_06710107.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces sp. e14]
 gi|292834880|gb|EFF93229.1| sensory box/GGDEF domain/EAL domain-containing protein
           [Streptomyces sp. e14]
          Length = 744

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 130/645 (20%), Positives = 262/645 (40%), Gaps = 39/645 (6%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           L P           L+  +     + ++   +  G V++ +L+   +   +L     +Q 
Sbjct: 54  LTPYLAAAVCTLGILYNVLNGHSVDRVVL--ITAGAVVLALLVRQGIT--LLENITLAQE 109

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +          V GS D++            +P  A + G  +  + G        IH +
Sbjct: 110 LAHKENHFRSLVQGSSDVIMIAAPNGVLRYVSPAAAGVYGRPAEDLVGT--ELASLIHPD 167

Query: 460 DRDNFRTILDSFVG---YRRGRLQYEFRVRAADNQFH----------WMIIRIRPMSNSN 506
           D       +  F+    +     + E R R                 W+ +      +  
Sbjct: 168 DLGCVVHEVRRFLAASPHDEPTTRIECRFRFGGGGASRPGETESGGGWLNVESTINRHHG 227

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G I      + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +   
Sbjct: 228 GLIFN----SRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTKRVQQALS-GRRSTDRGT 282

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ +  
Sbjct: 283 AVLFIDLDGFKGVNDTIGHQAGDELLVQAARRLQEAVRHGDTAARLGGDEFAALIVGDGG 342

Query: 627 SLKIAD------FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
               A        A  +R +++ P  +   ++ V ASIG A +    + + E+L+NA+LA
Sbjct: 343 RDHAAREGHILELADRLRATLSQPYLIDGNDVRVAASIGVA-FAEPGLGAGELLRNADLA 401

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G   VE ++    +       +   L  A+ + E  L++ P++RL D  +  +
Sbjct: 402 MYRAKAAGKGRVELYKPQMQQDVVRRAGLAGRLRSALHDGEFTLLHQPVVRLADGRVTAV 461

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            A  +W   +    + +EF+  AE+      +  ++LE+                + +++
Sbjct: 462 AAQARWRSSQGVLFTPAEFLRAAEDGDKSAELARWLLEQAVEQAAE--RARTGLTVSVVV 519

Query: 799 NIASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            + ++ L+D  L    ++ L+++       + +  +++      +     L  L ++G+ 
Sbjct: 520 RLGARRLVDRTLPPGAVETLLTRHGLPSGALVIELADTDPRVPLDELERRLSALGRLGVR 579

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIA 915
           + LD FG     ++ L  +P D +K +  L+ G+ E      I   ++ +A ++    +A
Sbjct: 580 IALDGFGGGHGAITALRRLPVDVLKLDRGLVEGAVESARLHKITSGLLRIAGDLGLQSVA 639

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPL 959
           + +     +  L  MGC + Q +  + PL    + + L    +P+
Sbjct: 640 EGVDLPEQVVALRAMGCTHAQGTAFSGPLDEYRLRRALAAGHYPV 684


>gi|327479162|gb|AEA82472.1| GGDEF domain-containing protein [Pseudomonas stutzeri DSM 4166]
          Length = 552

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 216/442 (48%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+      +   A +D  TGI NRQ F  +L   L      D     +  +D+D ++ 
Sbjct: 108 VRERCNLQGTLQKLAVRDPHTGIANRQGFQAQLLDALS---EHDGHGLELGYLDLDNFRH 164

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D+LARL G+ F ++L + +++ +    A  + 
Sbjct: 165 VNDALGHDAGDRLILQVVARLKAQLEVGDLLARLGGDEFALLLDTRDDAGRADAIADRIV 224

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
           +++A P  +    + +  S+G A  ++   ++  +L +A+LAM  AK   G     +   
Sbjct: 225 EALAEPYWVDGESLMLGCSLGLARASA-GTSADALLWHAQLAMRQAKASQGCTWCLYDEH 283

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           VS         + +L  A+   EL L Y P + L    +VG+EAL++W HP+ G +    
Sbjct: 284 VSRSARSLADQEGELRRALRRGELELHYQPRLCLDTGRVVGIEALVRWLHPERGLLGPDA 343

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  +++ R  RD+ S  +Q     + + +N++ +   D++L   +  
Sbjct: 344 FIPMAEESGLIVPLGYWVIARALRDLQSLHEQGAD-SLHMAVNLSFRQFQDSQLLPTLTR 402

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +    P  ++   +E+ VM   E+ +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 403 LIDERAIDPHWLEFELTETAVMRRSEQVQTAMQALGQLGVRFSLDDFGTGFSSFVHLSNL 462

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +   G+  ++  ++ +++ +A N+   ++A+ +     ++ L + G   
Sbjct: 463 PITLLKIDKSFVASMGARPEKRQLVEAMVGLAHNLRLEVVAEGVETAEQLELLRQFGAQQ 522

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   V+ PL    +L  +   
Sbjct: 523 VQGYLVSQPLPLAELLSFMSAE 544


>gi|119776230|ref|YP_928970.1| GGDEF family protein [Shewanella amazonensis SB2B]
 gi|119768730|gb|ABM01301.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 638

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/533 (22%), Positives = 226/533 (42%), Gaps = 39/533 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +          +  +LG    ++ G ++      H ++       L+  V  R  RL   
Sbjct: 137 LDNKERHFNDRVHALLGRFQSALEGHLQI---LYHKSELKVLNEELEHKVQERTQRL--- 190

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                         +  R +                I ++  +   +  +   D LT +P
Sbjct: 191 ------------AELSARLLKE--------------IEQRTAAEGHLEFHRTFDPLTHLP 224

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR +  +RL T+L     D+    T++   +  +K +ND  G   GD +LVSL++R+   
Sbjct: 225 NRATLTERLQTLLPKLKKDE--HLTLIYFGLRNFKSVNDSYGYLTGDSILVSLSQRLSLK 282

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L    +LAR++G+ F +  +   ++         +    ++P  +    ITV  ++G A 
Sbjct: 283 LPDNWLLARIAGSEFVLAALHNASTEMTEQVIARVLSDCSVPFTVNTNSITVQTNLGVAI 342

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDRVMIKEDLCLAVENSELY 721
                  S  +L+ A  AM  AK  G               +R++++  L  A+   EL 
Sbjct: 343 APVDATDSVSLLQRASAAMSIAKKEGAVVSFFGQETQKAAHERLLLESHLLDALHQGELA 402

Query: 722 LVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           + + P++ + D+  +VG EAL++W  P+ GN+    F+ +AE    I  I  F+L    +
Sbjct: 403 VYFQPLVSVRDKKRLVGAEALLRWHSPELGNVGPDRFIPLAESNGQIIEIGNFVLHEAMK 462

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W  ++N  P  I INI+     + +  E ++ L+      P  ++L  +E +++ +
Sbjct: 463 HAAHWCKRSNN-PFKIAINISPLQFRERQFVEHIEDLLDLYELPPGTLELEITEGILLQD 521

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
              +R  L RLR +G+ ++LDDFGT  S LSYL    FDT+K + S ++     E+   +
Sbjct: 522 EHHARASLARLRHLGVQISLDDFGTGYSSLSYLQKYAFDTLKIDRSFISNLEFNEQNREL 581

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            R+II MA  ++  ++A+ +        +    CD+ Q       +      +
Sbjct: 582 TRAIIAMAHKLKLNVVAEGVENAFQEAFIQAEECDFAQGYLYGKAIPAEKFAE 634


>gi|220909216|ref|YP_002484527.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cyanothece sp. PCC 7425]
 gi|219865827|gb|ACL46166.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 7425]
          Length = 583

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 115/555 (20%), Positives = 226/555 (40%), Gaps = 27/555 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +  V    D +            +P + T+LG  +G   G     L ++H  D    ++
Sbjct: 18  YASLVQHCSDTIVVLAQDGKVQYVSPALTTVLGYRTGDWLGQP--VLQHLHPEDIGLVKS 75

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L          L +E R R A+  +  +    + +   +  +   +    +I ++K + 
Sbjct: 76  HLSQLWQAPDTCLTWELRCRHAEGTWMTLECTGKNLL-YDPFLQGVVLYWRNINQRKATE 134

Query: 527 E-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           E        +   +  D LTG+ NR +F   L   L  S ++      +  +DID+++ I
Sbjct: 135 ETLRSVEARLSWQSQHDPLTGLLNRTAFESVLLKTLHQSLSEPQPHV-LCYLDIDQFRII 193

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD++L  +   +   L   D  ARL+ + FGI+L   +            +K
Sbjct: 194 NDACGYRAGDELLCQVASLVQNSLAVTDTFARLNSDSFGILLAQCSLEQARQLMERLRQK 253

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                    ++    T SIG   ++ +    + +L  AE A Y AK RG N   +F+   
Sbjct: 254 IQECRFIWQDKMFVTTVSIGLVEFSPATPNLASLLNAAEAACYVAKERGRNRCHNFQSDD 313

Query: 700 ----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE--IVGLEALIQWDHPKWGNIS 753
                +   V     L  A+  +   L +  I  L  +   I   E L++ +      +S
Sbjct: 314 IELVQKRGAVQWLSYLNKALAENRFRLFFQTIRPLGKDAAPIDHYEVLLRLEDNGGQLVS 373

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--------PIFILINIASKDL 805
            + F+  AE   ++  I+ ++++ +   I         P          F  +N++   +
Sbjct: 374 PAVFIGAAERFNLMPNIDRWVIKTLFALIREQLIPQPDPAALSQEEQHCFYAVNLSGASI 433

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D+ L E +      +   P+ I    +E+V + N  ++  L+  L+K+G    LDDFG+
Sbjct: 434 NDDRLIEFLLEEFQTSGVPPAMICFEITETVAISNLGKAAQLIRELKKLGCRFALDDFGS 493

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S   YL  +P D +K +G+ +         +A++R+I  +++ ++   IA+ +  +  
Sbjct: 494 GMSSFGYLKNLPVDYLKIDGNFIRNIINDSIDLAMVRAIQQISQVMQIETIAEFVENQSI 553

Query: 924 IKELTRMGCDYIQDS 938
           ++ ++ +G +Y Q  
Sbjct: 554 LEAISDLGVNYAQGY 568


>gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [Janthinobacterium sp. Marseille]
 gi|151280950|gb|ABR89360.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 934

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 110/568 (19%), Positives = 231/568 (40%), Gaps = 14/568 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ QH          +F++ ER  + +    D V   D + +     P    + G +
Sbjct: 353 MASSLQQHETEREQSKAILFAEKERAQVTLESIADAVITTDKLGNIEYMNPVAENLTGWS 412

Query: 442 SGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRI 499
                G         I+ + R+     ++     +    L  +  + + +   + +    
Sbjct: 413 KAEAEGLPSTRVFKIINGHTREPVPNPVELVFEQQSNVELIKDTVLLSRNGNEYAVEDSA 472

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ + +G I+  + + +D+++ +K    +   A  D LTG+ NR+ F  RL   +D  A
Sbjct: 473 APIRDRDGKIIGVVLVFHDVSDSRKLAIQLSHQAAHDPLTGLFNRREFERRLEVAIDTLA 532

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ +D+D++K +ND  G + GD++L  +T  +  L++  D LARL G+ FG 
Sbjct: 533 LQSKQH-ALLYLDLDQFKIVNDTCGHSAGDELLRQITALLQPLVRDSDTLARLGGDEFGA 591

Query: 620 ILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            L +          A  +R++I        ++   +  SIG  ++ S  ++  ++L  A+
Sbjct: 592 FLENCT-PDSAVRIAEKLRQTICDFHFVWQDKIFPIGVSIGLVNFNSDALSLPDLLSAAD 650

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLM--D 732
            A Y AK  G N V  +R    +  +        E +  A E     L    I+ +    
Sbjct: 651 AACYVAKDTGRNRVHIYRAEDHQLAQNQGEIKWNERIQKAFETDGFCLYSQEIVNIRPES 710

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
                 E  +         I ++ F+  AE    +  I+ +++  +     +   +++  
Sbjct: 711 GSFRFAELRLYMTDDAGRLIPTTAFIPAAERYHYMPTIDRWVIRTVFAQQAAALLKSSDQ 770

Query: 793 PIFIL-INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            + ++ + I+   L D    E ++            I  + +E+  + N  R+   +  L
Sbjct: 771 RLQVMLVKISGSSLDDETFIEFVREQFIHFALPYDSICFAIAETTAITNLTRALSFIDTL 830

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           + +G    LDDFG+  S  +YL ++  D +K +G  + G        A + +I  ++  +
Sbjct: 831 KPLGCRFALDDFGSGMSSFAYLKHLDVDFLKIDGGYIQGMESDPVDCAKIEAIQHISNVM 890

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQD 937
               IA ++  E  + +L  +G  Y+Q 
Sbjct: 891 GIKTIAPNVDSEAILNKLRGIGIGYVQG 918


>gi|319786946|ref|YP_004146421.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465458|gb|ADV27190.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 975

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 127/497 (25%), Positives = 239/497 (48%), Gaps = 24/497 (4%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           D +   + +   +G   GR   + R+R   AD +             +         +  
Sbjct: 488 DDERLLSFVAHNIGTGLGRQAAQERLRLAHADLERRVGERTGELERANEQ-------LLA 540

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN--LRPTVMVIDIDK 575
            I E+ ++ + +   A  D LTG+PNR   LD L + L+ ++          V+ +D+D+
Sbjct: 541 QIGERLRAEQRLTHQALHDALTGLPNRSCLLDSLASALERASDMAGDVPGFAVLFLDLDR 600

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND +G A GDD+LV++ RR+   +    ++ARL G+ F ++   ++    + + A 
Sbjct: 601 FKVVNDSIGHAAGDDLLVAVARRLVSAVGNDAVVARLGGDEFAVLASCKDGIDGVHELAR 660

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I  P+ +  RE+  +AS+G A W     +  E+L++A+ AMY AK+ G +    F
Sbjct: 661 HLLSVIGQPLWVAGRELFPSASMGIALWHPRYRSGEELLRDADAAMYRAKNEGRDRFAVF 720

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +       + ++ DL  A++  E    Y PI+RL D  + G EAL++W H K G +S
Sbjct: 721 DEAMREQAVRSLDLEADLRRAIQRREFIPYYQPIVRLEDGVVAGHEALLRWRHEKRGLLS 780

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ + EE  +I+ ++  + E++  ++            +I +N++ +     +    
Sbjct: 781 PAAFIALGEESGLIEQVDWLLYEQVIEELAR------GGSDYISVNVSPRHFRSPDFARR 834

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L+      P+R++L  +E  +M +  R+R +L RLR  G+   LDDFGT  S LSYL
Sbjct: 835 LLGLLDDAGADPARLRLEITEVALMDDAPRTRRMLDRLRDRGVRAVLDDFGTGFSALSYL 894

Query: 874 GYIPFDTVKFNGSLMTGST-----EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
              P   +K + S + G       E+ +A++R+I+ +++++    + + I  E     L 
Sbjct: 895 HRFPILGLKIDRSFVAGLDAEGGREESLALVRAILALSRSLGMDTVGEGIETEAQRDTLL 954

Query: 929 RMGCDYIQDSHVASPLG 945
           ++GC   Q   +  P  
Sbjct: 955 QLGCSAGQGYLLGRPAS 971


>gi|332524362|ref|ZP_08400580.1| sensory box/response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332107689|gb|EGJ08913.1| sensory box/response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 738

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/594 (22%), Positives = 254/594 (42%), Gaps = 35/594 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    +++VL     +  +  + E+ + A   +    ++W      +T + +   +L   
Sbjct: 134 LLARRLEYVLRAARTTVELDRNREKLARAQQLARMGSFEW-RQGGGLTLSREALEVL--R 190

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            G     +R+ L  +    R     +L   V  RR  L  +  +   D+    + +  + 
Sbjct: 191 VGGRPPTLRSLLRRVPRALRLPSLRLLRDRVAQRRA-LDQDLTL---DDGLLVVHVAGKA 246

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             + +   + Y G   DIT++ ++      +A  D LT +PNR+ F+ R    L+ S   
Sbjct: 247 EEDEHKRFVGYDGFLQDITDRHRAQSQSRYHAAFDMLTELPNRREFIRRANLALEASRQH 306

Query: 562 D-NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD------------- 607
               R  ++ ID+D++K+IND LG  VGD+VL  +  R+   +++               
Sbjct: 307 GLRHRVALLQIDLDRFKQINDTLGHQVGDEVLREVATRLRGCIRYHADIDDSAVEAAGPR 366

Query: 608 ------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGF 660
                  + R+ G+ F ++L    +       A  +  ++  P+ L    +  VT S+G 
Sbjct: 367 AHRDLETVGRVGGDEFVVLLPEVTDPADAERVAQRIVLALREPMRLAGVHDRVVTGSVGV 426

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           A +     T  E+ +NA+LAMY AK    + +        R     ++  L  A    EL
Sbjct: 427 ALFPDDGETVQELHRNADLAMYEAKKERDSSMVYGPGLLQRPM---LEAALPGAAGRGEL 483

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y P + +    +VG+EAL++W       +   +F+ +AEE   I  ++ + L   A 
Sbjct: 484 ELHYQPQVDVASGRLVGVEALMRWRF-NGRLVMPGDFIPLAEESGDILGMSEWALREAAA 542

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W+         I +N+  K  L NEL + +  L S        + L  +E+ +M +
Sbjct: 543 QARRWQADFGF-DGTIAVNLPPKLFLRNELIDLIDQLTSDGGGPRRLLSLEITETSLMRD 601

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAI 898
                  L RL +IG+ +++DDFGT  S LS+L  +    +K + S +   G     + I
Sbjct: 602 VVGVGPALRRLHQIGVDVSIDDFGTGYSSLSHLSGLHCAELKIDRSFVAKLGIEPTAVHI 661

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +R+II +A+++   +IA+ +  E  ++ L  + C  +Q  H+  P+        
Sbjct: 662 VRTIIALARHLSLRVIAEGVETEHQVELLHSLECTRMQGYHIGRPVPAPQFEHW 715


>gi|172039088|ref|YP_001805589.1| hypothetical protein cce_4175 [Cyanothece sp. ATCC 51142]
 gi|171700542|gb|ACB53523.1| hypothetical protein cce_4175 [Cyanothece sp. ATCC 51142]
          Length = 606

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 201/430 (46%), Gaps = 14/430 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            ++ D +T +PNR  F + ++  +  +   ++    V++IDI+ + +IND  G  +GD  
Sbjct: 178 ESYLDPVTELPNRILFNEYISIAVTNAKRHNHC-LAVLLIDIEHFSQINDKFGYRIGDYF 236

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +R+   ++  DI++R  G+ F I+L     +  +      + K +  P  + E  
Sbjct: 237 LQVIAQRLKNCIRTGDIVSRWGGDEFAILLPHIKEADNLYKITQRIIKELKSPFIVEENT 296

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
             +   +G A++  +     E+L  AE  + + K  G +++    ++        I++ L
Sbjct: 297 QVLVTYLGIATYPKNGQVPQELLNYAETQLINHKKTGNHNLLPENLNQTNPPLSQIEKRL 356

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   EL L Y P      ++I  +EA I+W HPK+G I   +F+  AE+  ++  + 
Sbjct: 357 YEALTKEELCLYYQPQFNTNAKKIEAMEAFIRWKHPKYGLIPPQQFLPWAEKTELVVPLT 416

Query: 772 LFMLERIARDIISWR-----DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            ++LE+       W+            + I            +L + +  +++ T   P 
Sbjct: 417 RWILEKACTHNKIWQMNKLSSVVVSVNLSIA------QFHHPQLVDLIDEVLTSTGLDPQ 470

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES+++ + + +  +   L+K+G+ + LDDFG   + +++L  +PFDT+K + S
Sbjct: 471 WLELEITESIILKDIKLAYEVSRELKKLGVRVCLDDFGIGYAAVNHLHQMPFDTIKIDVS 530

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+       +   ++ ++I +  + E  ++A+ +  E  +  L  + C  +Q  + + PL
Sbjct: 531 LIKNIKENPENTTLIAALIFLGNSFEMRVVAEGVETEQQLNTLHHLHCQIMQGYYFSKPL 590

Query: 945 GFNSILKLLK 954
                 + L 
Sbjct: 591 SVEKATQFLT 600


>gi|294011465|ref|YP_003544925.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292674795|dbj|BAI96313.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 598

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/518 (22%), Positives = 235/518 (45%), Gaps = 22/518 (4%)

Query: 462 DNFRTILDSFVGYRRGRLQY-EFRVR----------------AADN--QFHWMIIRIRPM 502
             F    D  +  +  R    E+R R                  D      +    +  +
Sbjct: 76  AAFAHSFDCILSGKAERSHAAEWRKRIVESILSGRDSEGFELRRDGALGPEYFYCTVGRL 135

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +G    ++  A D T  +   + +      D LT +PNR  F + +   L  +   +
Sbjct: 136 PKRDGKPDLFLFTALDRTSDRTIEKNLRRELLSDGLTALPNRTGFGEEIEDRLTNAPWPE 195

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N +  V+ ID+ ++ ++N+ LG   GD++L+++ +R+   L+  D+LAR+ GN F I   
Sbjct: 196 NAQFGVIAIDLSRFSRVNESLGPMAGDELLITVAKRLKSGLRQGDVLARIGGNDFAIFAR 255

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             N           +R +++ PI L + +I V  +IG A  TS      ++++ A+ A+ 
Sbjct: 256 LNNGLSDALHIVQRIRDALSYPIRLSDLQIRVDCAIGCALSTSLTEDPEDVVRKAQAAVK 315

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            AK  G   +    V      R  ++  L  A+    L L + P+I L   E+ G EAL 
Sbjct: 316 IAKRSGKVEIYRNGVLKEAQRRFSVESRLRDALAQGGLTLAFQPLIHLQTGEVTGFEALA 375

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIA 801
           +W+  + G++S +EF+ +AEE  +I ++  +     A+ +  W  +   P P+ + +N++
Sbjct: 376 RWEDEELGHVSPAEFIAVAEESGLITSLGRWAAYEAAQALSRWDAKFGQPAPLGVNVNLS 435

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              +  +++    +  +  +  S  R+    +ES ++ +PE++R LL  L+ + + + +D
Sbjct: 436 PIQMARDDVASMFEEALRYSGISGKRMTAELTESAIIADPEKARKLLFALKDLHMPIAMD 495

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+ L  +P D +K + S +T       +  ++R+I+ +A+++   + A+ I 
Sbjct: 496 DFGTGYSNLASLHSLPIDILKIDRSFVTSMLEDRDKEIMVRTILSLAESLGLHVTAEGIE 555

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +     L  +GC   Q  + A P+         + R+
Sbjct: 556 TQELAHALQNLGCWQGQGYYFARPMPEADAYDYWRARW 593


>gi|114561226|ref|YP_748739.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
 gi|114332519|gb|ABI69901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella frigidimarina NCIMB 400]
          Length = 827

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 132/673 (19%), Positives = 287/673 (42%), Gaps = 17/673 (2%)

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
           Y   V        +A+++      ++   ++ +    LL+  + ++  + +   +    +
Sbjct: 155 YSNSVELIYLEYDIANVLSEAVDSLLKRFIEIWGIGALLLSLFCVMLHYLLIRPLTQLSQ 214

Query: 362 LDNDIIQPALVGGLV---LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
              ++  P     +V     ++ +   + Q         + +    +R   AV G+ + +
Sbjct: 215 AAKNLDSPDFNTDIVCTSTELVNLRDYLNQVNGRLSRSKKRLNDAEQRWLFAVEGARNGI 274

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           WDW I    V  +     ILG     +      W   +H +D+      L +++  +   
Sbjct: 275 WDWCIATGDVFVSDRWKDILGYQPYELDNDYSVWESRLHRDDKAQVLNTLQNYINNQHEY 334

Query: 479 LQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            +   R+R  D ++ W++ R + +  +  G  LR IG   D++   KS +          
Sbjct: 335 YESVHRLRHKDGRYIWILDRGKIVEWDELGRPLRIIGTITDVSGDVKSQQITPDKQGHSG 394

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT + NR    D+L   L + +        +++I++D +K IND LG  +GD +L+ +  
Sbjct: 395 LTDLINRDVLADQL-YDLQVLSRKTGQFSALLMINLDNFKLINDALGHQLGDRLLMQIAA 453

Query: 598 RIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIAMRKSIAMPINLLEREI 652
           R+        ++ARL  + F I+  +     +  S +    A  +R+ I     + E+ +
Sbjct: 454 RLSGTFSSAGLVARLGADEFVILAKNFGNEIDQPSKRALALASEVRQLIGRGYTISEQNL 513

Query: 653 TVTASIGFASWTS-SKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKE 709
           +++A IG   +     +    +L  A+ AM  AK     G  +    +   +     ++ 
Sbjct: 514 SISARIGLVVFDGIESLEPQVLLARADSAMEQAKDSRSNGCAIYQPELDQNQVQPFKLQN 573

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L LA++N ++ LVY P++     ++  +E L++W HP++G I+  +F+  AE    I  
Sbjct: 574 ELKLAIQNKQMSLVYQPVVDQA-GQLNSIEVLMRWYHPQYGYINPRKFIASAELSDCIFE 632

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           + L+ L+++   I + +      P+ + +N++S+    +     +   I+    S +  +
Sbjct: 633 LELWALDQVCELIQTLQQANATVPL-MSLNVSSRHFHQDHFVNVVMNRINAAHVSATLFQ 691

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              SE V + N   +R  +   ++ G+++ +D+FG     +  L  I F  VK     + 
Sbjct: 692 FELSEDVFVVNANVARNKIAEFQRFGVNIAMDNFGGGSCAVHLLQGIRFSQVKLAAVYIE 751

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 +   I+ +I+  A  +   ++AK +  +  +  LT   C + Q   ++ PL  +
Sbjct: 752 DIEYNPETFNIVNAIVEFATKLNFPVVAKQVENKQQLNLLTHAKCTWFQGYIISRPLAHD 811

Query: 948 SILKLLKERFPLV 960
            I++L+K +  L 
Sbjct: 812 DIIQLIKTQLSLS 824


>gi|320529194|ref|ZP_08030286.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
 gi|320138824|gb|EFW30714.1| diguanylate cyclase domain protein [Selenomonas artemidis F0399]
          Length = 563

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/554 (21%), Positives = 224/554 (40%), Gaps = 24/554 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D  +  D V      +P       L + ++        P++++ DR    +
Sbjct: 20  YDLMKNTTSDYAFMMDPVEGIFLASPSFVQAYDLPAETLENISGVLEPFVYMQDRKPLAS 79

Query: 467 ILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           +  S      GR +  +FR+R A     W+ ++ +     +G    + G  + +  +  +
Sbjct: 80  LFASVNSLTEGRERQLDFRMRDAKGNLSWLRLKGKIGLAKDGTPNLFAGTISQLARRNSA 139

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                     D++TG+ NR  F+D LT  L  +         ++V+ +D ++ +N+    
Sbjct: 140 ----------DSVTGLLNRYQFIDDLTAALRTARETGG-SGGLLVMGVDNFRTVNEAFNH 188

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L  ++ RI + +     L RL G+ FG+I     +   + +F I +++  A P 
Sbjct: 189 EVGDIILRQISERILQNIPRGLSLYRLDGDEFGLIYPD-ADEEMLTEFFIRVQREFAHPQ 247

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
               R+  VT S G   +  S      + K A+ A+  AK  G N + +F    +     
Sbjct: 248 VYDGRQYIVTVSAGMVFYPQSARDPLILHKYAQAALDAAKSGGKNRLSAFSKEVYNRWLR 307

Query: 706 MI---KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   ++ L           L + P +   D  IVG E L++W + K   ++  EF+ I 
Sbjct: 308 SLTIQEQILQDVKAGCRNFELYFQPQVAGDDRHIVGAETLLRWKNSKGRMVAPMEFIKIL 367

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +  ++ E+  R    WR     P   + +N++ + + D    E +   + + 
Sbjct: 368 EETKTIVPVGRWIFEQALRTCKEWRRSI--PNFSMSVNMSYEQIKDLSFLEFIDDCLKRH 425

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +ES ++G+ +         R  GI + +DDFGT  S L+ L  +  D V
Sbjct: 426 DMPPDSVVLELTESKIVGDMKFVNARFDAFRSHGIKVAMDDFGTGYSSLASLKNLNCDIV 485

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC--DYIQD 937
           K + + +    E      ++   + +  +I  T   + +    +   L ++ C  D IQ 
Sbjct: 486 KIDRAFVIRILENHFDQKLVEYTVDLCHSIGMTTCIEGVERPEEYDCLVKI-CKTDTIQG 544

Query: 938 SHVASPLGFNSILK 951
                P    +  K
Sbjct: 545 YLFGRPEPQEAFEK 558


>gi|118587715|ref|ZP_01545125.1| hypothetical protein SIAM614_09078 [Stappia aggregata IAM 12614]
 gi|118439337|gb|EAV45968.1| hypothetical protein SIAM614_09078 [Stappia aggregata IAM 12614]
          Length = 669

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 214/434 (49%), Gaps = 11/434 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +         A  D LT +PNR+ F  RL +++D    D   +  V V+D+D++K IN
Sbjct: 217 ETELLNAENSKLAQTDALTDLPNRRHFFKRLESLIDEVK-DTGRKFAVGVVDLDRFKPIN 275

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+  +      + RL G+ FG + +   N  + A     + + 
Sbjct: 276 DTYGHQLGDQLLMEVGLRLKNIGIPDVEICRLGGDEFGFLYLG--NLNEAARTGQFICEQ 333

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
           I+ P  + E +++V AS G A +  +  ++  +   ++ A+Y++K   RG   V S    
Sbjct: 334 ISRPYRIGELQVSVGASCGIAFYPDAGTSAHVLFDRSDYALYNSKTSLRGRTTVYSAEHE 393

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I+  L  A   SE  + + P+++L +  +VG EAL +W+ P+ G I+  +F+
Sbjct: 394 ARIRSERAIEAALQSADLASEFQVYFQPVVQLPERFVVGFEALARWNSPQLGRIAPDKFI 453

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  + L + E+    I S         + +  N+++ D+  +E    +  +I
Sbjct: 454 PIAERAGLIHRLTLSLFEKAVAQIKSLP-----GSLTLSFNLSAHDVTSSETVAALLDII 508

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P +I    +E+ V+G+ E +   L  LRK G+ L LDDFGT  S L YL  +P 
Sbjct: 509 RRAGVNPRQITFEITETSVIGSYEAAETCLQLLRKAGVKLALDDFGTGYSSLGYLHRLPI 568

Query: 879 DTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D VK + S ++G        ++ SI+ + ++++ + + + +     ++ L  M C  +Q 
Sbjct: 569 DCVKIDRSFVSGIRDPIASGVVTSIVNLCRSMKMSCVVEGVEESHQLELLEAMRCRLVQG 628

Query: 938 SHVASPLGFNSILK 951
            H ++PL F  IL 
Sbjct: 629 YHFSAPLPFEDILA 642


>gi|325497204|gb|EGC95063.1| Hypothetical protein; GGDEF diguanylate cyclase (GGDEF) domain,
           membrane protein [Escherichia fergusonii ECD227]
          Length = 720

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 231/435 (53%), Gaps = 13/435 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A  D L+ +PNR++ ++ L    DL    +    +V+ ID+D +K IND+ G 
Sbjct: 293 EQKARRIARIDWLSRLPNRRALIETLE---DLRKRGECDLKSVVFIDLDGFKDINDIYGH 349

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +++SL + +  L     +LAR+ G+ F +++  + +     +FA  + K +  P+
Sbjct: 350 YVGDQLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYLNNPV 409

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L ER I ++ASIG AS +  + TSSE+ + A++AMYHAK  G   +  +      +   
Sbjct: 410 QLGERSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHYDAELNSARER 469

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+ L +E +E  + Y PI+    + +VG+E L++W     G +   +F+ +AE 
Sbjct: 470 QLTIENDIRLGLERNEFDVWYQPIVDARTQLMVGVEGLVRWKRRPAGELRPDDFIPVAET 529

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I A+  F+L R   D+        +  + + +NI+     D E  + +  ++++T +
Sbjct: 530 SGLIDALGQFVLRRACYDLH------PLSELKLSVNISPAQFRDPEFEDKVAGVLNETCF 583

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             SR++L  +E+ V+ NP+R++  +  L+ +G ++ LDDFGT  S + YL    FD +K 
Sbjct: 584 PASRLQLEVTETYVLENPDRAKSAIANLKALGTAIALDDFGTGYSSIGYLRRFNFDAIKI 643

Query: 884 NGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + SL  +  + ++  A++   + +A  +   + A+ +  E  +K L   GCD +Q  + +
Sbjct: 644 DKSLAGLVDNDDQAAALVSGTVRIASALGMLVTAEGVETEKQMKLLRLAGCDRLQGFYFS 703

Query: 942 SPLGFNSILKLLKER 956
            P+   S+++L ++R
Sbjct: 704 QPMPIESLMQLRQQR 718


>gi|254294573|ref|YP_003060596.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
 gi|254043104|gb|ACT59899.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
          Length = 686

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/433 (24%), Positives = 202/433 (46%), Gaps = 10/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                 +  A  D LT +PNR+SF   L   ++     +     + ++D+D +K +NDV 
Sbjct: 215 HLNSKTMRLANTDPLTKLPNRRSFFQTLDDTIEDYQETNQ-EFVLALLDLDGFKPVNDVF 273

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD +L S  RR+ + +    I+ RL G+ FG++ +  ++   +   A  +  ++  
Sbjct: 274 GHSAGDHLLKSTARRLSKRIGENVIVGRLGGDEFGLLFLKPDDDQTMLKRAADICNTLRE 333

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L E    +  +IG A +  +    S +   A+ A+ +AK         F      S 
Sbjct: 334 PFKLEEGTANIGGTIGLARFPRAGDARSTLFDRADYALCYAKQHSKGVPIFFSEQHEDSI 393

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R  + +++ L  A    ELY+ + PII      + G EAL +W +P  G +S  +F+  A
Sbjct: 394 RDALALEKGLTEANLEQELYVEFQPIIDTSQNRVAGFEALARWYNPVLGQVSPVDFITTA 453

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I+ +   +L+R    +  W +      I++  N+++  L      + + +++ + 
Sbjct: 454 EQAGSIRVLTNILLKRALESMQDWPE-----DIYMAFNLSAVLLSSPTCLQRLISIVEEA 508

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +PSRI    +E+++M + +R    L  +RK G SL LDDFGT  S LSY+  +P   +
Sbjct: 509 GIAPSRIVFEITETMIMQDYDRVIESLHYIRKQGFSLALDDFGTGYSSLSYVQKMPITRL 568

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +           I+R+I  + +N+    + + +  E  ++ +T +   YIQ  +
Sbjct: 569 KIDRAFIKDMAKKPADRNIVRTIADLCRNLNLDCVVEGVETERQLQLVTDLDLHYIQGYY 628

Query: 940 VASPLGFNSILKL 952
            + PL   + L  
Sbjct: 629 FSRPLAPTAALAF 641


>gi|218548797|ref|YP_002382588.1| hypothetical protein EFER_1436 [Escherichia fergusonii ATCC 35469]
 gi|218356338|emb|CAQ88956.1| Hypothetical protein; putative GGDEF diguanylate cyclase (GGDEF)
           domain, putative exported membrane protein [Escherichia
           fergusonii ATCC 35469]
          Length = 722

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 231/435 (53%), Gaps = 13/435 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A  D L+ +PNR++ ++ L    DL    +    +V+ ID+D +K IND+ G 
Sbjct: 295 EQKARRIARIDWLSRLPNRRALIETLE---DLRKRGECDLKSVVFIDLDGFKDINDIYGH 351

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +++SL + +  L     +LAR+ G+ F +++  + +     +FA  + K +  P+
Sbjct: 352 YVGDQLIISLAQTLQVLTPKDGMLARMGGDEFALMIGGKKSEQIATEFADKVMKYLNNPV 411

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L ER I ++ASIG AS +  + TSSE+ + A++AMYHAK  G   +  +      +   
Sbjct: 412 QLGERSIHISASIGIASGSLVECTSSELFRRADIAMYHAKATGKGRITHYDAELNSARER 471

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+ L +E +E  + Y PI+    + +VG+E L++W     G +   +F+ +AE 
Sbjct: 472 QLTIENDIRLGLERNEFDVWYQPIVDARTQLMVGVEGLVRWKRRPAGELRPDDFIPVAET 531

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I A+  F+L R   D+        +  + + +NI+     D E  + +  ++++T +
Sbjct: 532 SGLIDALGQFVLRRACYDLH------PLSELKLSVNISPAQFRDPEFEDKVAGVLNETCF 585

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             SR++L  +E+ V+ NP+R++  +  L+ +G ++ LDDFGT  S + YL    FD +K 
Sbjct: 586 PASRLQLEVTETYVLENPDRAKSAIANLKALGTAIALDDFGTGYSSIGYLRRFNFDAIKI 645

Query: 884 NGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + SL  +  + ++  A++   + +A  +   + A+ +  E  +K L   GCD +Q  + +
Sbjct: 646 DKSLAGLVDNDDQAAALVSGTVRIASALGMLVTAEGVETEKQMKLLRLAGCDRLQGFYFS 705

Query: 942 SPLGFNSILKLLKER 956
            P+   S+++L ++R
Sbjct: 706 QPMPIESLMQLRQQR 720


>gi|304411226|ref|ZP_07392841.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS183]
 gi|307306521|ref|ZP_07586264.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica BA175]
 gi|304350419|gb|EFM14822.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS183]
 gi|306910812|gb|EFN41240.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica BA175]
          Length = 646

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 196/420 (46%), Gaps = 6/420 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR + ++ L+T+L+     +    +V+ + +  +K IND  G  +GD +L  
Sbjct: 222 YDPLTGLPNRINLINSLSTMLEEVNRKEK--ISVLYLGLRNFKSINDSYGYLIGDKILTI 279

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++R+         +AR++G  F II   + ++ +       +      P  + +  IT+
Sbjct: 280 LSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITI 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCL 713
            +S+G A      I ++ +L+ A  AM  +K  G  H    + +    +    ++  L  
Sbjct: 340 PSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVD 399

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +EL L Y P I L  ++++G EAL++W +P  GN++   F+ +AE    I  I  F
Sbjct: 400 ALNKNELSLHYQPFINLKTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNF 459

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         W  +       I INI+   + +    E +  L++     P+ ++L  +
Sbjct: 460 VLHTALAQAAKWCREL-DQEFKIAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEIT 518

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E ++M +   +   + +L+++GI ++LDDFGT  S LSYL    FDT+K +   +     
Sbjct: 519 EGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEE 578

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E+   + ++II + K +   +IA+ +        +    CD  Q      P+      +
Sbjct: 579 NEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAQQFEQ 638


>gi|289641732|ref|ZP_06473891.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
 gi|289508490|gb|EFD29430.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
          Length = 896

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 194/418 (46%), Gaps = 7/418 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR + LDRL   L  +  D   R  V+ +D+D +K +ND LG   GDD+L 
Sbjct: 464 LHDGLTGLPNRTALLDRLHQALTGARGDRPRRVAVLFVDLDGFKTVNDSLGHHAGDDLLR 523

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R     +  D +AR SG+ F I+     ++  +   A  +  ++A+P    ER IT
Sbjct: 524 EVAGRCRRAARPGDTVARFSGDEFAILCEDITSASCVEAVAKRLVSTLAIPRTACERTIT 583

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711
           VTAS+G A          ++L  A++AMY AK +G +    F  +     R   +   DL
Sbjct: 584 VTASVGIAVSGPELSDPEDILHAADIAMYAAKRQGRSCHMVFDETMRAQVRRRTRTGNDL 643

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   EL L Y P++ +   E+ G+EAL++W HP+ G +    F+ +AEE  +I  + 
Sbjct: 644 RRALVTDELRLFYQPVMNMA-GELTGVEALLRWQHPERGLLEPDAFLAVAEETGLIVPLG 702

Query: 772 LFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR-IK 829
             +LE   R    W  +        I +++++  L D      + AL+  T       + 
Sbjct: 703 RRVLEMACRTAGRWASKLPAGVAPRIAVDVSACQLADPRFLSEVIALLEATNADDRYELG 762

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES  + +       L  L   G+SL +DDFG   S LS L   P D +K +   + 
Sbjct: 763 LEITESAFVDDVPAVTAALRDLGARGVSLYVDDFGAGYSSLSCLHRAPLDGLKIDKRCVA 822

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                    A++ ++I +A  +  T +A  +     +  L  + CD +Q   +ASP  
Sbjct: 823 RMTEDPAEHAVVAAVIGLAHTLGLTAVANGVETPEQLAALQTLRCDLVQGRLLASPQP 880


>gi|109896955|ref|YP_660210.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109699236|gb|ABG39156.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 678

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/439 (26%), Positives = 207/439 (47%), Gaps = 12/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E I   ++ D LT + NR+SF   L+ +   ++   N    ++ ID+D +KKIND +
Sbjct: 244 KRTEKIAQLSYLDPLTQLMNRKSFTQTLSKLTARASQS-NSELALLFIDLDGFKKINDTM 302

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD VL  +T+RIG      + L R +G+ F + L   +++      A A+  SI+ 
Sbjct: 303 GHQMGDSVLQEVTKRIGAFA-DQNKLGRWNGDEFLVALPY-SDAQTAQAIASAIITSISQ 360

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
            I +    + + A++G A        ++E+++ A+L M   K         F     +  
Sbjct: 361 VITVNNNSVHLGATVGIAMCPEHSTEAAELIQFADLVMCEQKASTNRTPALFSNELQQKV 420

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            D  +I E L  A E  +LYL Y PI+   D      EAL++W       I   EF+ +A
Sbjct: 421 LDTQVILEGLQQATERRQLYLCYQPIMSAKDSTFCSFEALLRW-DFAGRFIGPDEFIPLA 479

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +IK I  ++L R   D   W+   N     + +N++   L+D+     +   +  +
Sbjct: 480 EKSGLIKEIGAWVLNRACMDASQWQHAHNAA---VSVNVSVIQLMDDSFIRALDNALRSS 536

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP R+ L  +ESV + N  + +  L  ++K  + +++DDFGT  S LS L  +  + V
Sbjct: 537 GLSPERLHLEITESVFVDNKVKIKQQLEAIQKRKVLVSIDDFGTGYSSLSQLQSLAVNQV 596

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +        AI+R+ + +A  +    +A+ +      K L  MG DY+Q  + A
Sbjct: 597 KIDKSFVDNMENNGEAIIRATLFIASELNCKTVAEGVETLEQAKALKAMGVDYLQGYYFA 656

Query: 942 SPLGFNSILKLLKERFPLV 960
            P+    +++    + P+ 
Sbjct: 657 RPMPNEQLIEW---QNPVT 672


>gi|187932528|ref|YP_001884959.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum B str. Eklund 17B]
 gi|187720681|gb|ACD21902.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           botulinum B str. Eklund 17B]
          Length = 584

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/564 (21%), Positives = 247/564 (43%), Gaps = 35/564 (6%)

Query: 422 DIVRDRVTTTPDIATI-LGLASGSMHGPIR-------NWLPYIHINDRDNFRTILDSFVG 473
           DI    +   P    +                      +L YI++ D +  + I    + 
Sbjct: 18  DINGITMFWNPLKDELTFDYKIVDFLEDYEIDNKKINQFLNYIYLEDLNKVKDIFKEDLK 77

Query: 474 Y---RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL------------RYIGIAND 518
                +  L   +R++  +N   + I   + +   +G  L             Y     D
Sbjct: 78  KIYDSKKHLVTHYRIKN-NNNILYFIFVGKAVKKYDGYTLMGIHYCFENLDSNYWISEID 136

Query: 519 I-----TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           +     +E+    + I      D  T +PN   F   +   L      + ++  ++++++
Sbjct: 137 VLYKELSEEYFINQKITSLIECDRTTELPNCYYFKRTVMGFLKECKE-EQVQCAMLMLNL 195

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +N+  G   GD  L     +I  L+   D++ R SG+ F I +    +  +++  
Sbjct: 196 DNFKYVNESFGHEFGDVALRVAANKILSLVSERDLVCRYSGDTFLIFIPDIIDLNEVSIL 255

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + KS    I + E+E+ V+ SIG + +  + +    +LKN++ AMY AK  G N   
Sbjct: 256 CRKIVKSFHESIIIDEKEVYVSVSIGASLYPYNGVDFETLLKNSDAAMYVAKGNGKNEYN 315

Query: 694 SFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F             +++ L  A++N E+++V+ P + L D  +   EAL++W     G 
Sbjct: 316 FFTDKISIELNRVYSLQKGLRYALDNKEIFIVFQPKVTLDDFLVRSFEALVRWHSNDMGV 375

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++  E + IAE   MI  I  F+LE + + +    ++       + +N++   L ++ + 
Sbjct: 376 VNPDELIPIAENTKMIIPIGSFVLEEVFKKVRILINE-GYLNFKMAVNLSEMQLREDSIV 434

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  I K   +P+ I++  +ES++M + +++  +L  ++ +GIS+ LDDFGT  S L+
Sbjct: 435 SDLKKFIYKYRVNPNYIQVEITESMLMKSFDKNIKILNEIKDLGISIALDDFGTGYSSLN 494

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + + +       K   I+ +II ++  +   +IA+ +  +  +  L  
Sbjct: 495 YLTKLPIDALKIDRTFVVDLEKNSKNKCIIENIINLSHQLGIEVIAEGVESKQQVDYLKG 554

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
           + CD +Q  + + P  F  I  ++
Sbjct: 555 ISCDVVQGYYYSKPEKFEKIKNMI 578


>gi|289642805|ref|ZP_06474942.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
 gi|289507374|gb|EFD28336.1| diguanylate cyclase/phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
          Length = 786

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 142/789 (17%), Positives = 282/789 (35%), Gaps = 77/789 (9%)

Query: 198 VASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF--LSKLVNLPSGELLIWRA 255
           +      F     +  R    +      W+   +     GF  L  ++            
Sbjct: 19  LLMAAVFFAVTTLVGLRDVSSVVNQVDRWLGNSFSVAAGGFCMLRAILVRGERLAWAVLG 78

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
              ++  +  I F        +            +                       ++
Sbjct: 79  SGLLSYGAGSIYFT----EIMKHVGAPSPADIGWLVFYVATCVSVILLLRGRVIRFHPSV 134

Query: 316 ASIVLYYTYFIIYHGMKGYERAV----------------LLIPAWILIFIWFIGLWMAIT 359
               L     +           +                  +   +L+ +      +   
Sbjct: 135 WLDALVGGLGVAALASGLAAAVIGVDNPVGLSVLGLNIAYPLADLMLLVLVASAFGLRGW 194

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +    + G  +   ++   +     A G   + +        LA++      W
Sbjct: 195 HPEKAWWLLGVSLAGFAVADTIVTGAMASGTYAPGGPVEAL------WGLALVLPAYAAW 248

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                                    M   +  W              +  +        L
Sbjct: 249 Q-------------------RTPREMSERVAGWEVLFIP--------VFFAVSALTLLVL 281

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
               R+             +  +  +   +   +      TE ++  +     A  D LT
Sbjct: 282 GAFIRLPP-----------LTVVLAAGTVLTAIVRAGITFTEVRQLAD-SKMQARTDELT 329

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G  NR+ F +RL    + +      R T++V+D+D++K+IND LG  VGDD+L  + RRI
Sbjct: 330 GFANRRGFFERLNE--EETRGGGAARFTLLVLDLDRFKEINDSLGHQVGDDLLKLVGRRI 387

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+  D+LARL G+ F ++L    ++      A  +  ++  P ++      V ASIG
Sbjct: 388 ETALRPTDLLARLGGDEFAVLLQD-ADATAARTVAERVLAALDGPFDVDGVSFHVDASIG 446

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
            A +    +  + +L+ A++AMY AK  R               DR+ + E L   +   
Sbjct: 447 VAVYPDHAVAGNVLLQRADIAMYAAKAARTRIEHYRPGADLHILDRLDVIETLRAGLGQD 506

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +L L Y   + L       +EAL++W+HP  G +  +EF+ +AE   +++ + L +L   
Sbjct: 507 QLRLHYQMKVDLRTGSCHAVEALVRWEHPTRGLLQPNEFLPMAEHTGLMRTLTLEVLGLA 566

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                 W D        + +N+++ +LLD      +  L++     P  ++L  +E+ +M
Sbjct: 567 LDQCRQWWDAGLQIG--VAVNLSAPNLLDKGFPAEVGELLTTKGVPPRALELEITETALM 624

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            +  R+  +LG LR++G+ + +DD+GT  S L+YL  +P D +K + S +          
Sbjct: 625 LDRIRTAAVLGSLREMGVRIAVDDYGTGYSSLAYLRELPVDVLKLDKSFVIHLDSDPLSA 684

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL--K 954
           AI++S + +A ++   I+A+ +  E  +  L   GCD+ Q  ++ +P   + +  LL  +
Sbjct: 685 AIVQSTVGLAHSLALRIVAEGVETETAMGRLADYGCDFAQGFYLGAPQPADKLTPLLWHR 744

Query: 955 ERFPLVKNT 963
            R     ++
Sbjct: 745 NRRAYSSSS 753


>gi|170743248|ref|YP_001771903.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168197522|gb|ACA19469.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 884

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/445 (25%), Positives = 211/445 (47%), Gaps = 19/445 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++SL  +   AF D +TG+ NR+    RL             R   + +D+D++K +ND
Sbjct: 426 LRESLGRVRQLAFFDPVTGLANREKM--RLDG--TAILGQGRGRTAFLFLDLDRFKSVND 481

Query: 582 VLGIAVGDDVLVSLTRRI--------GELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             G   GD +L  L RR+                +L R+ G+ F I++        +   
Sbjct: 482 TFGHRAGDALLSQLARRLVAFLEERRRAGAWESVLLGRIGGDEFLIVVSGALTRDGLRAC 541

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             A+   ++    +    + V ASIG A     +    E+L  A++AMY AK +G     
Sbjct: 542 GEALVAVVSESYEVGSAHMVVGASIGIALA-EGEAGYDELLVRADIAMYEAKRQGRGTCT 600

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F         +R+ I+ +L  A++  E  + Y P + L D  +VG EAL++W HP+ G 
Sbjct: 601 FFTAEAAQRVQERLGIESELRRALKTREFSVHYQPKVSLADGRVVGAEALMRWHHPERGA 660

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I   +F+ IAEE  +I  + +F+LER   +I     + +   + + +N++   L D    
Sbjct: 661 IPPGKFIPIAEEAGLIPDLGVFVLERALAEIGELLARGHD--VTVAVNVSVLQLEDPTFA 718

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + ++  +++    PS ++L  +E+V M + +  +  + RLR +G+ +++DDFGT  S L+
Sbjct: 719 QTVEDRLARAGLPPSCLELEITETVAMRDSDTIQGHVTRLRGLGVRVSIDDFGTGYSNLA 778

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   P D +K + SL+ G     ++  I+R+I+ +A ++    + + +  + D++ L  
Sbjct: 779 TLARAPIDALKLDRSLVDGVAGNPEQQTIVRTILSLAGSLGFETVVEGVETDADLRFLVE 838

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
            G    Q    + P+   +   LL+
Sbjct: 839 GGATTAQGYLFSPPVPIETFRALLE 863


>gi|325926525|ref|ZP_08187842.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas perforans 91-118]
 gi|325543097|gb|EGD14543.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas perforans 91-118]
          Length = 801

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/586 (18%), Positives = 219/586 (37%), Gaps = 15/586 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 215 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 274

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          +H  D           + + +     E R   AD   
Sbjct: 275 SMANVLLYRPEEL--QACTLAEVMHPEDIKLDS---RGMLDWPKLLQSGELRFVRADGGV 329

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 330 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 389

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 390 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRSGDWLGRL 448

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M   +  P +    R +T + S G           +
Sbjct: 449 GGDEFAILLAN-TDLAQAQAVLERMHGVLGQPWSHQGGRPLTPSCSFGVVEIRHGVSDLT 507

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
            ++  A+LA + AK  G N V  F  +     +          +  A+    L L    I
Sbjct: 508 TLMTAADLACHAAKEEGRNRVRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKI 567

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L D   +  E L++        +S  EF+   E   + + ++ ++LE +   + +   
Sbjct: 568 QVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLAANPM 627

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
              M  +   +N++++ +   +  + + AL  +      ++ +  +E+ V+G+ E ++  
Sbjct: 628 HVAMLDL-CHVNLSAQSIAQPDFLDVVCALFERYPALVPKLCMEITETAVIGDLEHAQRF 686

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  +R  G  + LDDFG+  +   YL     D +K +   +          A + SI  +
Sbjct: 687 VQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQV 746

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +   ++A+ +  E DI  L   G   +Q   +  P     +L 
Sbjct: 747 GLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLH 792


>gi|89093901|ref|ZP_01166846.1| probable signalling protein [Oceanospirillum sp. MED92]
 gi|89081787|gb|EAR61014.1| probable signalling protein [Oceanospirillum sp. MED92]
          Length = 825

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 213/440 (48%), Gaps = 7/440 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++ ++  + +      D LT +PNR    ++L    + ++ +   R  +M+I I   K++
Sbjct: 375 SQIQRLNKEVYQRLNFDPLTHLPNRVMLKEQLKQATENASQNQ--RIGLMIIQISGIKEV 432

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N++LGI+ GD  L     +I   + F   +ARL G  F ++L  + +   I      + +
Sbjct: 433 NNLLGISAGDKALTMAANQIQTAVDFQFPVARLEGLEFAVLLEDQTDDETINHIGRRLLQ 492

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            + +P  L         SIG A +          L NA  AM+ AK      +  F    
Sbjct: 493 LLQLPCELDGEHFFFQPSIGVAIFPEDASDDESFLSNAHTAMHQAKSSHKRGLCFFAPQF 552

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                D   +  DL  A+   +L + Y P +     +++GLEAL++W HPK G +S +EF
Sbjct: 553 KEQIIDESSLINDLHQALAQHQLEVYYQPQVMSNTGQVIGLEALLRWHHPKRGMVSPAEF 612

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I++I  ++L+     I  W    +   I I +N++S  + + +L   +++ 
Sbjct: 613 IPVAEKTGLIESIGEWVLDTACFQIAQWNRD-HNQNIRIAVNLSSLQVANPDLVATIEST 671

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +   +P  ++L  +ES+++ + E +  +L +L+ +G+ + +DDFGT  S LSYL   P
Sbjct: 672 LERARLAPELLELELTESILIEDFEATIKILQQLKDLGVKIAVDDFGTGYSSLSYLKQFP 731

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    +  K   I ++II MA ++   +IA+ +  +     L    C+ +
Sbjct: 732 IDRIKIDQSFVRDIDQSSKSAEITQAIIAMAHSLNMQVIAEGVETDHQRGFLMSQTCEEL 791

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    + PL    I +L+++
Sbjct: 792 QGFFFSKPLPSAKIEQLIQK 811


>gi|227819118|ref|YP_002823089.1| hypothetical protein NGR_b08800 [Sinorhizobium fredii NGR234]
 gi|227338117|gb|ACP22336.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 649

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/477 (23%), Positives = 226/477 (47%), Gaps = 18/477 (3%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-------ILCNAFQDNLTG 540
                 ++ + +  +  S   +L   G   + T Q ++              A  D+LT 
Sbjct: 168 PSGNTVFLTMSLNVVVVSGAFLLVLAGNYREFTAQVEAQLRTEALGRENQRLANIDSLTH 227

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+SF  RL+     ++++ + R  V ++D+D +K +ND+ G   GD +LV + RR+ 
Sbjct: 228 LPNRRSFFARLSAECAAASSNQS-RLAVAMLDLDGFKAVNDLYGHPTGDCLLVEVGRRLE 286

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           +       LARL G+ + II+ S  +   +      + + +A P  L    + ++AS+GF
Sbjct: 287 QACPGDAFLARLGGDEYAIIVAS-ADEADLLRLGDRICEEVAAPYVLDGISVLISASVGF 345

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
           A +         + + A+ A+Y AK    G   +     S        I++ L  A   S
Sbjct: 346 AVYPDHAAEPDLVFEYADYALYEAKQNKTGRPVLFCREHSFAILRNAKIEQALRDADLRS 405

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E+ + + PII L    +   EAL +W+  + G++S ++F+ IAE+  ++  +   +LE+ 
Sbjct: 406 EIAVAFQPIIDLETGRVAAFEALSRWESRELGDVSPAQFIPIAEKAGLVSELTRVLLEQS 465

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                 W +     P+ +  N++ KD+        +  ++ K+ + P RI    +E+ +M
Sbjct: 466 LCAAQQWPE-----PLRLSFNLSPKDICAAGGALRIANIVLKSGFDPRRIDFEITETAMM 520

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            +   +R  +  LR +G  ++LDDFGT  S L+ L  +P   +K +   +T   E+    
Sbjct: 521 HDFPHARQAVEALRALGCGISLDDFGTGYSSLTQLQTLPITKLKIDRCFVTDLQEQTTGY 580

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            I++S++ +A+ +    I + +  E +++ L ++GC  +Q  H++ PL   +  + +
Sbjct: 581 RIVKSMLSLAREMGIDCIVEGVETEEELRTLRQLGCRLVQGFHMSKPLDQQAARRYV 637


>gi|168186556|ref|ZP_02621191.1| sensory box/ggdef family protein [Clostridium botulinum C str.
           Eklund]
 gi|169295477|gb|EDS77610.1| sensory box/ggdef family protein [Clostridium botulinum C str.
           Eklund]
          Length = 821

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/810 (19%), Positives = 302/810 (37%), Gaps = 108/810 (13%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
            I Y +   ++     ++ W  L  I ++F     +V    G   +      +      I
Sbjct: 54  LIGYDIRGVNIFRIIASIGWCFLHGIWLEFA----IVTSNGGNYKLGYKYKILIYLFPAI 109

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
            F+   LH  +               ++         P+       +      +    FI
Sbjct: 110 FFVRNSLHEPK------------SVLVSTEIGWVDICPIDWMFPFLVIYFMFCILGGIFI 157

Query: 327 IYHGMKGYERAVLLIPAWIL---IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
           IY   K  ++      A I+   IFI  +   +         I   A     + + I+  
Sbjct: 158 IYRWGKNSKKNREKKQAVIINSTIFIGALLGGITNIVFPVLHIDTFAWGVFFIYVPIMGI 217

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  I          + +               + ++  +      +       I      
Sbjct: 218 WYSIIKYKMLSITPEYVSD------YIFKAVNEPIFFLEEDFSIKSFNKSAEKITKYD-- 269

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             +    N+   I   D       L             E  +   DN+    I+  R + 
Sbjct: 270 --NLKEINFSQLIEEKDL-----NLKELFEINSIN-NLEVNLVKKDNEIIECILSARVVY 321

Query: 504 NSNGDILRYIGIANDITEQKKSLE------------------------------------ 527
           +   DIL  + I  DI+++KK+                                      
Sbjct: 322 DDFKDILGIVVILYDISQRKKAERILKDYNSRLENKVRERTLKLEKSNKKLQKEILDRKL 381

Query: 528 ---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               I    + D LTG+PN+  F   +  I++    ++  +  +M +DID +K +ND LG
Sbjct: 382 AEKKIKYMVYNDILTGLPNKFYFEKHIKNIIEEYEKNNG-QFAIMFLDIDNFKLVNDTLG 440

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK---IADFAIAMRKSI 641
              GD++L     R+  ++   ++LAR+ G+ F +++ +  N      I +  + + K++
Sbjct: 441 HPKGDELLKKFADRMKTIIYENNLLARVGGDEFLLLIDNIENQEDTSYIDEILLKINKTL 500

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  +E  VT SIG A + S       ++KNA+ AMY AK+ G N+++ F   +  
Sbjct: 501 KEPFIIDNKEQFVTVSIGTAFYPSDGENVEIIIKNADTAMYEAKNSGKNNLKFFSSEANV 560

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                I  K +L  A+E +EL + Y P + +   +IVG EAL++W       IS  +F+ 
Sbjct: 561 KLTERIVMKNNLYRALEKNELEVHYQPQVNIRKNKIVGFEALLRWT-CNGERISPGKFIP 619

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I   +++   + I  +          + +N++   L + +  E ++ ++ 
Sbjct: 620 VAEDTGLIVPIGYNVIKDACKAIKGFNSIGKNR-FTVAVNLSVNQLHEKDFVERVEEILD 678

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY------- 872
           +    P  ++   +E + +   +     L +LR++G+ +++DDFGT+ S L         
Sbjct: 679 EVQLCPEYLEFEITERIAIKGNKYVFNTLNKLREMGVKISIDDFGTEYSSLMNIKKIDID 738

Query: 873 -----LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
                               + G TE+    AI+ SII ++ N+  T+IA+ +  +  ++
Sbjct: 739 KIKID------------MQFIRGVTEEDKDAAIVSSIIDLSHNVGLTVIAEGVEKKKQLE 786

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L    CD +Q      P+    I K++K 
Sbjct: 787 YLKFKRCDEVQGFFYYKPMPEREIYKIIKN 816


>gi|163734071|ref|ZP_02141512.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
 gi|161392607|gb|EDQ16935.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
          Length = 619

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/592 (19%), Positives = 239/592 (40%), Gaps = 58/592 (9%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           E  +LA+  + D           +  +     TI G  +    G     L  I  +    
Sbjct: 16  EGLALALASNDDGAVM------EIQWSNKAFTTISGYTASEALGKRGTIL--IGPDMGQG 67

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +  +      + R    + + +W  +    +S+       ++    ++ E++
Sbjct: 68  VHLFIIEKL-MKWENFSTKSRNNRKNGEVYWQRMSWVHLSDPETGNRWWLCSIVELEEEQ 126

Query: 524 KSLEGILC-------------------------------------NAFQDNLTGIPNRQS 546
                                                        +A +D LTG+ NR+ 
Sbjct: 127 ADAARHAINGPALSDQEGYEKALEQVQRLEKENTRLLQLAKSVAKDANEDALTGLSNRRH 186

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F   L T ++           V+ ID+D++K +ND LG   GD +LVS+   + +L    
Sbjct: 187 FEIELKTWIENLKKH-GTEFAVIYIDLDRFKFVNDTLGHEAGDRLLVSVADMLRDLTGES 245

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++ARL G+ F I+     ++L I+  A  +  ++  P     +    +AS+G A     
Sbjct: 246 DLVARLGGDEFIILRPLAQSALNISSLADEIVGTMQAPFACDGKSTACSASVGVAIANKY 305

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724
              + +++ +A+ A+YHAK +G      F             +  DL LA E  E    +
Sbjct: 306 MEHAEQVVADADEALYHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERCEFVPYF 365

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P+I      I   E L++W HP  G ++ + F+  A  + ++K I+  +   +   +  
Sbjct: 366 QPLIDAQTGRIACAEMLVRWAHPTQGILAPAAFLDTAANMGILKQIDEIIFASVHGALSR 425

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ER 843
           + +     P  + +N+++  L D      +++    +  SP R+ +   ESV +    + 
Sbjct: 426 FDEAGVDLP-RVAVNVSAARLADPTFIHDIKS----SGISPQRLTIEILESVYLDRMGDV 480

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRS 901
            R  +  L ++G+++ LDDFGT  + +S L  I    +K + + +    E+     ++ S
Sbjct: 481 VRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPSILKIDRNFIQPIVEEASTRPLVAS 540

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+ + K++   ++A+ +  E   + ++ MGCDY+Q  +   P+  + +   L
Sbjct: 541 IVGIGKSLGMRVVAEGVETEEHARLVSEMGCDYLQGFYFGKPMCEDDLRNRL 592


>gi|15600488|ref|NP_253982.1| hypothetical protein PA5295 [Pseudomonas aeruginosa PAO1]
 gi|116053443|ref|YP_793769.1| hypothetical protein PA14_69900 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894398|ref|YP_002443268.1| putative signal transduction protein [Pseudomonas aeruginosa
           LESB58]
 gi|254238010|ref|ZP_04931333.1| hypothetical protein PACG_04123 [Pseudomonas aeruginosa C3719]
 gi|254243818|ref|ZP_04937140.1| hypothetical protein PA2G_04646 [Pseudomonas aeruginosa 2192]
 gi|9951610|gb|AAG08680.1|AE004942_3 hypothetical protein PA5295 [Pseudomonas aeruginosa PAO1]
 gi|115588664|gb|ABJ14679.1| putative signal transduction protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169941|gb|EAZ55452.1| hypothetical protein PACG_04123 [Pseudomonas aeruginosa C3719]
 gi|126197196|gb|EAZ61259.1| hypothetical protein PA2G_04646 [Pseudomonas aeruginosa 2192]
 gi|218774627|emb|CAW30444.1| putative signal transduction protein [Pseudomonas aeruginosa
           LESB58]
          Length = 558

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 211/437 (48%), Gaps = 9/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      +   A QD LTGI NRQ F   L   L      D     +  +D+D ++ +N
Sbjct: 112 ERLGLQATLQLLAEQDPLTGIANRQGFQTLLAARLS---EFDGRGLVLGHLDLDNFRHVN 168

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +++ +  R+   ++  D LARL  + F ++L +  +  +    A  + + 
Sbjct: 169 DSLGHQGGDRLILQVVNRLRGFMENGDSLARLGSDEFALLLDTRRDPQRAERVAERIVEC 228

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +    + +  S+G A   +    +  ++ +A +AM  AK R G     F     
Sbjct: 229 LGEPYWIDGESLLLGCSLGLAHARAD-EGADPLMWHAHIAMQQAKSRQGCTFHVFDERIN 287

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R  R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G ++ SEF+
Sbjct: 288 RGVRSLADLEAELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHGERGLLTPSEFV 347

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  +++ R  RD+  W +   + P+ + +N++ +   D++L   +Q LI
Sbjct: 348 PLAEESGLIVPLGYWVIARALRDM-QWLNGRGLEPLHMAVNLSFRQFQDSQLLPTLQRLI 406

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++   +E+ VM   ++    +  L ++G+  +LDDFGT  S   +L  +P 
Sbjct: 407 EEHGVDARWLEFELTETAVMRRSDQVLQTMQALGQLGVRFSLDDFGTGFSSFVHLNSLPI 466

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G  ++     ++R++I +A N+   ++A+ +      ++L   GCD +Q
Sbjct: 467 TLLKIDRSFVGGMDQRAENFQLVRAMINLAHNLNLEVVAEGVETLRQQEQLRDFGCDQVQ 526

Query: 937 DSHVASPLGFNSILKLL 953
              ++ PL    + + L
Sbjct: 527 GYWISPPLPLAELARFL 543


>gi|152964479|ref|YP_001360263.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358996|gb|ABS01999.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 874

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/623 (19%), Positives = 244/623 (39%), Gaps = 23/623 (3%)

Query: 343 AWILIFIWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
           A  L     +             D++  A                    +      Q   
Sbjct: 247 AAALRVDGVLAAAARSDGEPALGDVVVLATSVPERNAAQRAVLARAAGAVVERAQRQADE 306

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH---I 458
           +  + Q L VL     V     +   +     IA  LG  +          L  +     
Sbjct: 307 ARRQLQQLLVLC---GVVVAATLTGTLLARRAIARPLGRLAEQSRAVAAGELVDVEENGP 363

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +       L + V   R        + A D       +   P+    G  +    +   
Sbjct: 364 AEVRVVAQGLAAAVDSLRRVQAQADAIAAGD---LDCEVVRTPVPGPLGAFVHA-SVTQV 419

Query: 519 IT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           IT   E+++    +   A  D LT +PNR   L      L  +A     R  ++ +D+D 
Sbjct: 420 ITAFHERERLQADLAHQAAHDALTELPNRAQTLVLTERALHRAARQHG-RVGLLFVDLDH 478

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G A GD++L  +  R+ E ++  D++ RL G+ F +++    +   + D   
Sbjct: 479 FKAVNDSFGHAAGDELLRVVASRMHETVRGGDVVCRLGGDEFVVLVEGVEDEKGLVDLGE 538

Query: 636 AMRKSIAMPINLLE----REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            + ++++ P+ L      + + V AS+G A  T   + +  ++++A+ A+Y AK  G   
Sbjct: 539 RLIRAVSAPVALTGLPQAQHVRVGASVGVAVGTPGALDAERLVRDADAAVYRAKSAGRGV 598

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           VE F             ++  L   ++  EL L Y P++ L       +EAL++W  P  
Sbjct: 599 VEVFDDELRAELSARAELETALRRGLDGGELVLHYQPVLDLQTGRTRSVEALVRWQRPGH 658

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDN 808
           G +    F+ +AE   ++  +  + L      ++ W  +      + + +NI+ + L   
Sbjct: 659 GLVPPDSFIPVAEASSLVCDLGRWALAEATAQLVRWDAEGGHRAGLDVAVNISGRHLAQA 718

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +   ++ +  + SR+ +  +E+V++  P  +   L  LR+IG+ + +DDFGT  +
Sbjct: 719 HLLDDVTDALTASGIAASRLTVEITETVLVDEP-LALEHLRSLREIGVRVAIDDFGTGYT 777

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +  L  +P D +K + S ++        ++R +I  A +    ++A+ +  +  +  L 
Sbjct: 778 SIGQLSRLPVDVLKIDRSFVSSPEAGNGDLVRLLISAAHSFSLGVVAEGVEEDTQLSALL 837

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
              CD  Q    A P+  + +  
Sbjct: 838 AASCDAAQGFLFARPVPADDLPA 860


>gi|83950565|ref|ZP_00959298.1| hypothetical protein ISM_05685 [Roseovarius nubinhibens ISM]
 gi|83838464|gb|EAP77760.1| hypothetical protein ISM_05685 [Roseovarius nubinhibens ISM]
          Length = 619

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 135/576 (23%), Positives = 248/576 (43%), Gaps = 30/576 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            L +    D V   D+    V     +  ++G +S  + G   +   +I   D+      
Sbjct: 26  ELVLEHLRDGVAVVDMRGRVVWMNRALERMIGYSSAEICGRHPS--EFILPPDQRPSPED 83

Query: 468 LDSFVGYRRGRLQYEFRV---RAADNQFHWMIIRIRPM-------SNSNGDILRYIGIAN 517
           L +F     G L   FRV     AD    W       +       S+ + D    I    
Sbjct: 84  LANFRYRPDGGLFDRFRVSEHMRADGSRFWNQQSHALITLDDCDGSDGDSDGQLVIIGCR 143

Query: 518 DITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTT--ILDLSATDDNLRPTV 568
           DIT+Q        ++ + +   AF D+LTG+ NR+     + +  +L       + +  V
Sbjct: 144 DITDQVDTESALHRAKDELEYAAFHDDLTGLANRKRLTAYMRSDPVLQYIR---DGQIGV 200

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+DK+K+IND LG A GD  L  +   +       D++ R  G+ F +I        
Sbjct: 201 LQIDLDKFKEINDTLGHAAGDATLRHVAAGLSRNAGPDDLVCRTGGDEFLLICARVATQD 260

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +   A  + + IA+P++  E+ I V  SIG +   +  ++   +++ A+ A+Y AK+ G
Sbjct: 261 ALMTRAELVLRDIAVPLDWDEQTIHVGISIGASMAGADTVSGEALIQQADQALYSAKNGG 320

Query: 689 GNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
              V  +          +  +  +L  AVE ++  +   P +RL  + I G EALI+W+H
Sbjct: 321 RGQVVFYTDFLGRRYRAQQKLARELREAVEENQFEVYLQPQLRLESDTISGCEALIRWNH 380

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +    F+  A    ++  ++   +      + +  DQA    + + IN++S  L 
Sbjct: 381 PERGTLLPGVFLEEARRSQLLADVDYISMNLALDALQAL-DQAGHHHLTMSINVSSPVLA 439

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGT 865
           D      +   +     +P R+ +   E+ ++   E      + RLR++G+ + LDDFGT
Sbjct: 440 DENYPGLLDWALQSRNLAPGRVCVEILETTILDGGELDVVTAVDRLRRLGVHVALDDFGT 499

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L+++     D +K + S++       +   I RS+I +   +   ++A+ +  +  
Sbjct: 500 GYAGLAHMSAFEIDGIKLDFSMIRRLESDPRNRVITRSLIRLCGLLGMDVVAEGVETQGQ 559

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +  L R  C  IQ   +A P+    +L  L E  PL
Sbjct: 560 LDILRRADCPCIQGFGLARPMPVADMLSWLDEMLPL 595


>gi|327479201|gb|AEA82511.1| GGDEF domain/EAL domain-containing protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 710

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 221/440 (50%), Gaps = 11/440 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +      D LT + N ++F + +T +L  +A ++     V+V+D+D +K+IND LG
Sbjct: 272 AEHQLNAMTHYDPLTNLFNGRAFTEMVTQVL--AAREERQALAVLVVDLDNFKRINDSLG 329

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD  L    +RI  +L   D+LAR SG+ F ++ +           A  +   +  P
Sbjct: 330 HRSGDLALQQAAQRIRAVLGQHDMLARFSGDEFCVLTLGAW--EHAQATAERILDQLRPP 387

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
             L + ++ +TASIG + +    +    + ++A LA+   K  G N    F         
Sbjct: 388 FVLGDTQLRLTASIGISQYPEDGLNFDALFRHAGLAVGQCKASGRNRSLRFNPALELRAQ 447

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + + +++DL  A+  + L + Y PI+       V LEAL++W HP+ G IS   F+ +AE
Sbjct: 448 EDLSLEQDLRRALNENLLSVHYQPIVDGRSGRPVSLEALVRWQHPQQGFISPERFVGLAE 507

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   +  ++ ++  R   D++   ++ +   + + +N ++ +L + ++   +  ++ +T 
Sbjct: 508 QHGFVAELDTWVARRACADLVGLLEEGHD--LRMAVNCSALNLSNPQMPAVVARILERTG 565

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+R+ +  +E+ +M +   +   L  +R++G+ +++DDFG+  S L+YL  +P DT+K
Sbjct: 566 LEPARLTVEVTENALMNSLGAAIRTLDAVRELGVKVSIDDFGSGYSSLTYLRQLPVDTLK 625

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +    E     AI  +II MA  +   ++A+ +   + +  L   GCD+IQ  + 
Sbjct: 626 VDRAFVREIAEQANDRAITAAIIAMAHKLGLKVVAEGVEEAVQLDYLRENGCDFIQGYYY 685

Query: 941 ASPLGFNSILKLLKERFPLV 960
           + PL   ++   L ER PL 
Sbjct: 686 SRPLPLTALRDWLAER-PLT 704


>gi|325920711|ref|ZP_08182617.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas gardneri ATCC 19865]
 gi|325548763|gb|EGD19711.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas gardneri ATCC 19865]
          Length = 804

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 211/567 (37%), Gaps = 15/567 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A       + S   R   A   +   +  +D+    +     +A IL      +      
Sbjct: 236 AMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGRVLDANTSMANILRYRPEEL--QACT 293

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +H +D           + + R     E R   AD    W       +     +   
Sbjct: 294 LAEVMHPDDIALDS---RGMIDWPRLMQSGELRFLRADGGVMWGRWSASLVEPGPEEPTL 350

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D++   +  + +  +A  D LTG+ NR     RL  +++       L   +  +
Sbjct: 351 VLAVIEDVSHAHELADEVSFHARHDALTGLINRHEIERRLLRLIE-PPQSPQLCHALCFV 409

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G AVGD  L      I   L+  D L RL G+ F I+L +  + L+  
Sbjct: 410 DLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLLQAQ 468

Query: 632 DFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                M   +  P +    + +T + S G           + ++  A+LA Y AK  G N
Sbjct: 469 ALLTHMHGVLGQPWSHQGGKPLTPSCSFGVVEIRQGASDLNALMTAADLACYAAKEEGRN 528

Query: 691 HVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +  F  +     R          +  ++    L L    I  L D   +  E L++   
Sbjct: 529 RIRCFDENDLALARRRHDGGWISAVQQSIAEQRLLLYAQKIQVLSDPGRLQYEVLVRMRA 588

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                +S  EF+   E   + + +++ +LE +   + +         +   +N++++ + 
Sbjct: 589 RDGRVLSPGEFLPAVERYGLGRMVDVHVLETLCAQLAANPLHVARLDL-CHVNLSAQSIA 647

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +  + + AL  +      ++ +  +E+ V+GN E+++  +  +R  G  + LDDFG+ 
Sbjct: 648 QPDFLDFVCALFERYPTLVPKLCMEITETAVIGNLEQAQRFVQSVRARGCHVALDDFGSG 707

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +   YL     D +K +   +          A + SI  +   +   ++A+ +  E DI
Sbjct: 708 LASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADI 767

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
             L   G   +Q   +  P     +L 
Sbjct: 768 AGLREAGVGQVQGFSLHRPCPLEDLLH 794


>gi|269959464|ref|ZP_06173847.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835901|gb|EEZ89977.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1031

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 222/580 (38%), Gaps = 17/580 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 460  LFEARDITSRKAMEDKLYQRESSLRNYYEQQPVMMVTLDNNNRIQEVNRFAQQLLGYQPL 519

Query: 444  SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G         + +++    R +L        G  + E   R AD    W+   IRP+
Sbjct: 520  DMLGHRLREF---YSDEKALIPRQVLLQPQQVMHGVWRREIEYRHADGHRVWVRENIRPL 576

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +S+    + + +  DITE KK  + +   A  D LT   NR  F   L T L    +  
Sbjct: 577  RDSD----QLLIVGEDITETKKLAKQLEYQARYDLLTDTYNRNYFELELQTALREVESHR 632

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F ++L 
Sbjct: 633  RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNAVLARMGGDEFAVLLK 691

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +    I      +           + ++ ++ S+G      +  T   +   A+ A +
Sbjct: 692  DCDEHGAINVAKQIITTLSEQLFRWEDTQLFMSCSVGIRIIDHTADTPQMVHAQADSACH 751

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMD-EEIVG 737
             AK +G N    F + +    R  ++      +  A+ +  L L    I+ L      + 
Sbjct: 752  VAKEQGRNRYNLFSLDNEELQRRQLEMQSVNLVHEALSSKRLELFAQRIVNLSGEGSPLC 811

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +S   F+  +E   +   I+  ++ +      +  +          
Sbjct: 812  FEILVRIRDAQGNYLSPGVFIPASERYNIAHWIDKQVITQTLEWFEARPEIVEKLG-RCA 870

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + + E  + +   +  +     +I L  +E+  M N +++     R+R +G  
Sbjct: 871  INLSGQSMGNQEFIDFLLERLQSSSIPCEKICLEITETAAMSNIDQALGFFTRVRTLGCL 930

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 931  IALDDFGSGLSSFGYLKQLPVDIVKIDGLFVRDINVNEMDRVMVRSINDLAKQMGKVTVA 990

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +  +   + L  +G DY Q   +  P     ++  L++
Sbjct: 991  EFVENDQVRELLIELGVDYGQGYGIGHPKPLAELVDELQQ 1030


>gi|311696619|gb|ADP99492.1| sensory box/GGDEF/GAF/EAL domain protein [marine bacterium HP15]
          Length = 788

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 198/437 (45%), Gaps = 12/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  E +   A  D+LTG+PNR+   +  T  L  +        ++  ID+D +K IN
Sbjct: 345 EKQQHQERLEKAANYDSLTGLPNRRRLTEIFTQELHEANLRQGT-VSLCFIDLDGFKGIN 403

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD VL  ++ R+   ++  D + RL G+ F  +L    +    +     + ++
Sbjct: 404 DQQGHAVGDAVLKIISERLKATIRQHDAIGRLGGDEFVAVLRDVED----STVYSRILEA 459

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           I  PI+     + ++AS+G   +         +L++A+ AMY AK  G +    F     
Sbjct: 460 IRRPISYQNAVMKLSASMGVTVYPDDAEDPDTLLRHADQAMYAAKDSGKDTYSLFDLASH 519

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R +RV + E +  A+   +  L Y P I      + G EALI+W+HP+ G +S + F+
Sbjct: 520 FNRKERVRVLEQVDEALAKKQFELYYQPKINYRTGTVEGFEALIRWNHPEEGLLSPARFL 579

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E     + + LF++E     I  + D     P  + IN++    L     + +  ++
Sbjct: 580 EHLEFTDYARQVGLFVMESAVSVICEFMDLG--LPYTLSINLSPSHFLSEHFPDDITGML 637

Query: 819 SKTLYS-PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++  +    R+ +   E+  + +       L   R  G+ ++LDDFGT  S L+Y   +P
Sbjct: 638 NECPHEVRDRLIIEILETTALDDTTTVMKNLSVCRNTGLCISLDDFGTGYSSLNYFRTLP 697

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              VK + + +      +    I+ +I+ ++++ +   +A+ +      + L  +GCD  
Sbjct: 698 AQEVKIDRTFVGDLIGNQDNSMIVEAILRLSQSFQRRTVAEGVETAEQEQRLLELGCDVG 757

Query: 936 QDSHVASPLGFNSILKL 952
           Q    + PL     L  
Sbjct: 758 QGYRYSPPLPLAEALDW 774


>gi|21108991|gb|AAM37556.1| phosphodiesterase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 732

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 211/442 (47%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  ++D +         V+++D++++K++ND LG 
Sbjct: 289 EQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGT-AAVLILDLERFKELNDSLGH 347

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ ++++ P+++ RL  + F ++++++ ++  +   A  +   +  P+
Sbjct: 348 DFADQVLVEAGRRLVDVVQEPNLVGRLGSDEF-MVVVAQADAASVQQDAQRLLLQLRRPL 406

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +  I + ASIG             +L+ A++A              +R+        
Sbjct: 407 VLPQARIQLEASIGIVLIPEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLR 466

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            ++   DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 467 RLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 526

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L++  R    WR Q       + IN+++ DL D  L + ++  +     
Sbjct: 527 SGVIHPLTRFVLDQALRCQAQWRKQGLQLG--MAINLSALDLSDPGLPDFVRGCLEHHAV 584

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR  G+ L++DDFGT  S L+ L  +P D +K 
Sbjct: 585 PAQSVTLELTESALMRDVEFALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKI 644

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    +      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 645 DKSFVMQLADGTDDAFIVRSTIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYS 704

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 705 PPLEEAPLVAWCMRQLGMTTPA 726


>gi|83649059|ref|YP_437494.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83637102|gb|ABC33069.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 590

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 204/423 (48%), Gaps = 6/423 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTGI +R  F DRL   +  +    + R  ++ +++D+++ +N  LG   GD ++  +
Sbjct: 159 DSLTGILDRARFYDRLHQAILRAERVKH-RVGLIFVNVDEFRTVNQSLGYRAGDILIKMM 217

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ ++L+  D LAR+ G+ F +IL     S  + + A  M         + +  + +T
Sbjct: 218 AARLRQVLRRSDCLARVGGDEFAVILEDGQESFSLINVAKKMANVFEQAFVVNQHPVNLT 277

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
           AS+G A +  S  ++  +L+ A  AM+ AK   G     F     R    R+ ++ +   
Sbjct: 278 ASMGMAVFPESGDSADLLLRRANQAMFDAKKEHGVSYRFFNDRMNRELDMRLELETEFRQ 337

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   +L L Y P I +   E+VG+EAL++W HP+ G ++ + F+  AE   +I  +  +
Sbjct: 338 ALRGDKLDLYYQPKIDVRSGEVVGMEALVRWPHPRLGVLTPAAFIAAAERSSLIIPMGYW 397

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +LER  RD+   +       +   +N++ +   D  L E +  +I       ++ +   +
Sbjct: 398 VLERACRDLNMLQTMGYD-DLVCAVNLSFRQFFDRRLSETVFRIIYNANIDTTKFEFELT 456

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES +M + + +   L  L  +G+   LDDFGT  S  + L  +P  TVK + S +     
Sbjct: 457 ESAMMFDRDYTLKCLKELTHLGLRFALDDFGTGYSSFTNLRNLPISTVKIDKSFIENVCT 516

Query: 894 --KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +   ++  +I +A ++  T++A+ +     ++ L +  CD  Q    A PL F+    
Sbjct: 517 IAEDATLVSGMISLAHSLSMTVVAEGVEKPEQLEFLRQHNCDQAQGYWFARPLPFHEFCD 576

Query: 952 LLK 954
            L+
Sbjct: 577 FLQ 579


>gi|119773529|ref|YP_926269.1| putative diguanylate phosphodiesterase [Shewanella amazonensis
           SB2B]
 gi|119766029|gb|ABL98599.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella amazonensis SB2B]
          Length = 837

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 115/674 (17%), Positives = 233/674 (34%), Gaps = 38/674 (5%)

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
                                   + +        A+        I +  I L       
Sbjct: 180 VDSRDGGQYQIPVAGIGSASLVLDVSFGLRDVSSPAIQPDRMVAGILMMGILLLALGYVW 239

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS------------QGIFSDGERQSL 409
           +   ++ P       L  +    +    + A G                 IF+  E+  +
Sbjct: 240 IRRSLVVPLNGLMSQLGNMDPSASRYLPLSADGCAEVRHFSRVSNKLLAEIFAQKEQARV 299

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            + G  D V   D   D +   P    +LG  +        + +  I  +  D F     
Sbjct: 300 ILEGIADAVILTDAKGDVLYLNPPACRLLGGQAADFAATSVSGILGIKPSLLDRFLKEQG 359

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                   R                +   +  + +        +    D+T +++    +
Sbjct: 360 QACKQISLRFAG-----------RLLQCTLSAIEDHQHTRTGALLALRDVTAEERLKSEL 408

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A +D +TG+PNR +F  R+  +             +  +D++++K IND  G   GD
Sbjct: 409 RRQAEEDAVTGLPNRTTFEARMKRL-----ASGQETVALCYLDLEQFKIINDSCGHLEGD 463

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  + +     L   ++L R+ G+ FGI+L+  +            +K     +    
Sbjct: 464 RMLCMVAKTFQSCLAPGELLGRVGGDEFGILLLGRSAHEVALLLKTLQQKLSMQVLESQG 523

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--- 706
           +   V  SIG A   +      E+ K+A++A   AK +G N +  +       +      
Sbjct: 524 QCHRVGVSIGVAFARAPLPPVGELFKDADIACVAAKQKGSNQIHFYDDKDKELNYQRNAP 583

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEALIQWDHPKWGNISSSEFMLIAEEL 764
                +  A+ N EL L + PI  L        +E L++        +  ++F+  AE  
Sbjct: 584 KWALRIAKAIHNRELELYFQPIHSLHGGSPRKRMEILLRIRESNGRILPPAQFIASAERF 643

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++  ++  ++      + +  +  +     + IN++   L    +   +   + +    
Sbjct: 644 KLMPEVDKAVVSMAMEWLAAHPNFWHDH--CLSINLSGNSLGVEGMESFIVEQLQRNGIP 701

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P+ I    +E+  + N +R+  +L  LRK G +  +DDFG+  +   YL  +P D VK +
Sbjct: 702 PACICFEITETTAIQNRQRALDMLRSLRKQGFAFAIDDFGSGFASYGYLRELPVDYVKID 761

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           G  +       K  AI++SI  +   +    +A+ +  +  +  L  +G +Y Q   V  
Sbjct: 762 GCFVRQLASNAKDYAIVKSIHDVCSVMGIETVAEFVESQDIMARLEEIGINYAQGYAVGR 821

Query: 943 PLGFNSILKL-LKE 955
           P          L++
Sbjct: 822 PKPLKDYAPFPLRQ 835


>gi|325917089|ref|ZP_08179322.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536665|gb|EGD08428.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 713

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/566 (19%), Positives = 210/566 (37%), Gaps = 15/566 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A       + S   R   A   +   +  +D+    +     +A IL      +      
Sbjct: 146 AMRRIRDYLLSHEWRFRTAFQQAALGMVKFDLSGHVLDANVSMANILRCRPEEL--QACT 203

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +H +D           + + R     E R   AD    W       +     +   
Sbjct: 204 LAEVMHPDD---IVLDSRGMIDWPRLMQSGELRFLRADGGVMWGRWSASLVEPGPEEPTL 260

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D++   +  + +  +A  D LTG+ NR+    RL  +++       L   +  +
Sbjct: 261 VLAVIEDVSHAHELADEVAFHARHDALTGLINRREIERRLLHLIE-PPQSPQLCHALCFV 319

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G AVGD  L      I   L+  D L RL G+ F I+L +  +  +  
Sbjct: 320 DLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLAQAQ 378

Query: 632 DFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                M   +  P +    R +T + S G           + ++  A+LA Y AK  G N
Sbjct: 379 ALLERMHGVLGQPWSHQGGRPLTPSCSFGVVEIRQGASDLNALMTAADLACYAAKEEGRN 438

Query: 691 HVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +  F  +     R          +  A+    L L    I  L D   +  E L++   
Sbjct: 439 RIRCFGENDLALARRRHDGGWISAVQQAIAEQRLLLYAQKIQVLSDPGRLQYEVLVRMRA 498

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                +S  EF+   E   + + ++ ++LE +   +           +   +N++++ + 
Sbjct: 499 RDGRVLSPGEFLPAVERYGLGRMVDAYVLETLCAQLADNPMHVATLDL-CHVNLSAQSIA 557

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +  + + AL  +     S++ +  +E+ V+G+ E ++  +  +R  G  + LDDFG+ 
Sbjct: 558 QPDFLDFVCALFERYPTLVSKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSG 617

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +   YL     D +K +   +          A + SI  +   +   ++A+ +  E DI
Sbjct: 618 LASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADI 677

Query: 925 KELTRMGCDYIQDSHVASPLGFNSIL 950
             L   G   +Q   +  P     ++
Sbjct: 678 PGLRDAGVGQVQGFSLHRPCPLEELV 703


>gi|257486573|ref|ZP_05640614.1| diguanylate cyclase, putative [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010055|gb|EGH90111.1| diguanylate cyclase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 784

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|28896846|ref|NP_796451.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260364686|ref|ZP_05777281.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260877747|ref|ZP_05890102.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034]
 gi|260895603|ref|ZP_05904099.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28805054|dbj|BAC58335.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308088548|gb|EFO38243.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308089866|gb|EFO39561.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus AN-5034]
 gi|308112600|gb|EFO50140.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 1046

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 224/580 (38%), Gaps = 17/580 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 475  LFEARDITSRKLMEDKLYQRESSLRNYYEQQPVMMVTLDSHNRIQEVNRFAQLLLGYEPI 534

Query: 444  SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G           +D+  F R +L           + E   R AD    W+   IRP+
Sbjct: 535  EMLGHRLREFYL---DDKALFPRQVLLQPSHQVHDVWRREIEYRHADGHSVWVRENIRPL 591

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++S+    + + +  DI+E K   E +   A  D LTG  NR  F   L T L    +  
Sbjct: 592  NDSD----QLLIVGEDISETKLLAEKLEYQARYDLLTGTYNRNHFELELKTALREVDSHR 647

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F ++L 
Sbjct: 648  RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNSVLARMGGDEFAVLLK 706

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +    I    + +           +  + ++ S+G      +  T   +   A+ A +
Sbjct: 707  DCDEYGAINIAKVIISTLGEHLFIWEDTRLFISCSVGIRIIDHTAETPQMVHAQADSACH 766

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEE-IVG 737
             AK +G N    F + +    R  ++      +  A+ N  L L    ++ L   E ++ 
Sbjct: 767  AAKEQGRNRYNLFSLDNEELQRRQMEMQSVNLVHEALSNQRLELFAQRVMNLQSPESLMY 826

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +S + F+  +E   +   I+  ++ +         D          
Sbjct: 827  FEILVRIRDAQGNYVSPAIFIPASERYNIAHWIDKQVINQALEWFEQRPDVVEKLG-RCS 885

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + + E  + +   +  +     +I L  +E+  MGN +++     R + +G  
Sbjct: 886  INLSGQSMGNQEFIDFLFERLKNSTMPCEKICLEITETAAMGNLDQAIDFFTRAKSLGCM 945

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 946  IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEMDRVMVRSINDLAKQLGKVTVA 1005

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +  E  ++ L  +G DY Q   +  P     +++ L  
Sbjct: 1006 EFVENEQVMQHLIDLGVDYGQGYGIGHPKPLAELVENLSS 1045


>gi|317483791|ref|ZP_07942731.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924894|gb|EFV46040.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 1038

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/472 (23%), Positives = 214/472 (45%), Gaps = 12/472 (2%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D Q  ++ +R + +   N +++  +    DITE+      +   A+ D+L  IPNRQ+ 
Sbjct: 535 KDGQQIYLQLRHKKIRWLNDEMVYLV-SGTDITERMLHARKLEHMAYHDSLLDIPNRQAA 593

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L  L  +L      +  R  V++ DI  +K  N+  G A GD +L  ++  I   +    
Sbjct: 594 LRNLQHML-----REGKRCAVVLFDISDFKLFNETFGHAKGDLLLKDVSLSIARFV-PEG 647

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            L R  G+ F ++L   +        A ++R S    + + + E T     G +      
Sbjct: 648 SLYRSGGDDFLVLLSGADGPQ-AERLAQSVRNSFLRVLTIEDLEYTCNIDAGISISPQHG 706

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL-CLAVENSELYLVYHP 726
              S ++ +AELA+  A+  G    +  +       R  + + L   A+ N +  + + P
Sbjct: 707 TNPSTLITHAELALAEARKEGRGIYQFNKELDQILSRKKLLQILIRSALANGDFEVHFQP 766

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           +  +        EAL++        IS +EF+ +AEE  +I  +   +L+ + R ++S  
Sbjct: 767 VFEISTGLFRKAEALLRLRDAAGSFISPAEFIPVAEETGLIVDVGYLVLDTVCRQLLSM- 825

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                 P  I +NI++  LL       +  +I     +P +++   +ESV++ + E+ + 
Sbjct: 826 ASVAGLPFQIAVNISAIQLLQTNFVSRVVEIIQYHGINPQQLEFEITESVLINSFEQVKG 885

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           ++ +LR  GI   LDDFGT  S LSYL ++P  T+K + S +     +E    + +++I 
Sbjct: 886 VMQQLRDKGIRFALDDFGTGYSSLSYLTHLPISTLKLDRSFIRNLETSESNRQVCKAVID 945

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +A++    I+A+ +      K ++ +G   IQ  + A PL    ++  L E 
Sbjct: 946 IARHFNMAIVAEGVENAEQSKIISELGATSIQGFYYARPLPGGQLVPWLSEH 997



 Score =  115 bits (288), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 7/270 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
             DI+W+  +       +  +   LG         + + +  +H +D       + +   
Sbjct: 169 ISDIIWERFVSGGGFAISDGVERFLGHPRHHFR-SVEDLVCLLHPSDLAIVHERMKAV-S 226

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              G      R+R  D  +  +  R+  +    G+  R IG   DIT +       L  A
Sbjct: 227 SLTGCDCLSVRMRHNDGTWRQVEARVVVLRGRAGE-DRIIGALKDITPKAVRDLPSLQPA 285

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
              +LTG+      L+    I++ +         ++++D     +I    G    +  L 
Sbjct: 286 QISSLTGLYT----LEAGQAIIEKNLLTGLNLQALILVDFRNLDEIEQRHGNRWKNLFLQ 341

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
                +  L +  D+        F +      +  ++ D    +++++           +
Sbjct: 342 HAGAILRNLARENDVPIHCRAGSFILFADQYESFREVTDLTRNLQRTLGAVCAFDGESDS 401

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYH 683
           V  SIG A      +T S ++  A  A   
Sbjct: 402 VEFSIGIAVAPYDALTFSGLVDRAAQACSQ 431



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 11/156 (7%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLAS 442
           V           Q   S      +    S +IVW+     +     +  P  A     A+
Sbjct: 21  VAASSQRRDTALQRTASSLNLYKIIGDSSSEIVWEQASAPNADCIFSGDPRFA----CAN 76

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +   +      +H +D+   R+ +DS     +       R    D  +  + +  R +
Sbjct: 77  KCL--TVEEAYETVHPDDQPLLRSDIDSLHSGEQDSFSRRIRALGCDGSWIPVDVCARSL 134

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            ++N   L  IG    I+            + +D L
Sbjct: 135 RDNNRTPLYLIGGFKGISNL--PPVSSAIASSRDPL 168


>gi|251771515|gb|EES52092.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum ferrodiazotrophum]
          Length = 706

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 132/581 (22%), Positives = 255/581 (43%), Gaps = 18/581 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I+ +         +  + E+  + +   G+ V   D         P    + G +  
Sbjct: 121 MVTIRDISRRRQLMNALAREKEQWFVTLKSLGEGVIVTDASGLVTFMNPAAEILTGWSFL 180

Query: 444 SMHGPIRNWLPY-IHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              G     +   +    ++     +   +       L     +     +   +     P
Sbjct: 181 EASGQPVGTVYLAVSEETQERQADPVARCLSAGHIVGLSNHTCLLTRHGRKLAVEDSASP 240

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + +        + +  D+TE+++    +   A  D LT IPNR  F DR    L  +   
Sbjct: 241 IRDGE-RTTGVVLVFRDVTEKREMERQLAHQARYDYLTQIPNRVLFHDRFDQALARARRS 299

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +    ++ +D+D +K+IND LG A GD VL     R+ + ++  D +AR+ G+ F +I+
Sbjct: 300 GSP-LALLYMDLDSFKEINDTLGHAAGDIVLRQAAERLVKAVREEDTVARMGGDEFTVIM 358

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +   ++      +  +++ P+ +  +E++VTAS+G A +      +  +L++A++AM
Sbjct: 359 TGFSGREEVVTSVGRLFLALSEPMMVGGQEVSVTASVGVAVFPEDGEEADSLLRHADIAM 418

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK R GN V  FR         RV    D   A+E SEL L + P + ++   I G+E
Sbjct: 419 YKAKERRGNAVVFFRADLTGELEKRVSFSADFRRALERSELLLEFQPEVEIVSGRIRGVE 478

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+HP  G +    F+       ++  ++L++L++ AR  ++W   +  PP+ + +N
Sbjct: 479 ALLRWNHPLQGRLLPESFLPQLLRGGLMAELSLWVLKKAARQALAWPHASGEPPLPVSVN 538

Query: 800 IASKDLL-DNELCEGMQALISKTLYSPSRIKLSF--SESVVMGNPERSRLLLGRLRKIGI 856
           ++ ++L         ++ ++++T   P R+++     E  +  +      +LG +R +G+
Sbjct: 539 LSVRELRGSVSPVVRLREVLAETGLPPERLEIEIAFPEGRLGDD----VPVLGGMRDLGV 594

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL-----MTGSTEKRIAILRSIIPMAKNIET 911
            L  DDFG     L  L    FD VK +  L       G   K  A+LR ++ M +++E 
Sbjct: 595 KLVADDFGEGIVSLDILRSGLFDRVKLSRQLSPGGDSGGFDPKAAAMLRGVLSMLRDLEI 654

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +AK       ++ L   G  +IQ   ++ PL  + I  L
Sbjct: 655 PAVAKGAESRESLRILREAGLRFIQGYALSRPLSPHEIAGL 695



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 4/123 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R       S D +   D +R  V  +P ++ I G     + G   + L     +  +  R
Sbjct: 14  RFEAIFASSVDAILAVDPMRHIVLASPSVSRIFGYDPDELVGRSISILYARTEDFIEQGR 73

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD--ILRYIGIANDITEQK 523
                         + E+R    D          R + +S G   I  Y+    DI+ ++
Sbjct: 74  LRYSREAEDSLSAYEVEYR--RKDGSTFPGEASGRKILSSKGSGAIAGYMVTIRDISRRR 131

Query: 524 KSL 526
           + +
Sbjct: 132 QLM 134


>gi|91224908|ref|ZP_01260167.1| sensory box/GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91190154|gb|EAS76424.1| sensory box/GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 1041

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 134/717 (18%), Positives = 259/717 (36%), Gaps = 31/717 (4%)

Query: 260  ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV 319
               S  ++   + L    +  ++     +     AIL  +          +    +    
Sbjct: 332  LFGSLFVVMSVVILLMGYYLQRMRRSESAARESQAILESIFDQSMQYMGILDANGVLKSG 391

Query: 320  LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALV---GGLV 376
              +   ++YH     +R +   P W       +  +        +           G LV
Sbjct: 392  NDHLQSLLYHQGLRLDRPLWFHPNWSEKAQALLEEYFHAPHHQVSTFEAEIWSKEHGALV 451

Query: 377  LIVILIGFTV-----IQHVLATGY------FSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
            L V L  F+       Q++               ++               ++   D   
Sbjct: 452  LEVSLKPFSQQVGNHKQYLFEARDITSRKLMEDKLYQRESTLRNYYEQQPVMMVTLDSNN 511

Query: 426  DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFR 484
                       +LG     M G       +   +D+  F R +L        G  + E  
Sbjct: 512  RIQEVNRFAQLLLGYKPMDMLGHRLREFYF---DDKVLFPRQVLLQPNQQVHGVWRREVE 568

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             R A+    W+   IRP+S S     + + +  DITE K   E +   A  D LTG  NR
Sbjct: 569  YRHANGHRVWVRENIRPLSESE----QLLIVGEDITETKLLSEKLEYQARYDLLTGTYNR 624

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
              F   L T L    +   +   ++ +D+D+ K +ND +G   GD  +      +  +L 
Sbjct: 625  NHFELELKTALCEVDSHRRVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEGVLP 683

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
            +  ILAR+ G+ F ++L   +    I    + +           +  + ++ SIG     
Sbjct: 684  YNSILARMGGDEFAVLLKDCDEYGAINIAKLIISTLSEHLFIWEDTRLFISCSIGIRIID 743

Query: 665  SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSEL 720
             +  T   +   A+ A + AK +G N    F + +    R  ++      +  A+ N  L
Sbjct: 744  HTADTPQMVHAQADSACHAAKEQGRNRYNLFSLDNEELQRRQMEMQSVNLVHEALSNQRL 803

Query: 721  YLVYHPIIRLMDEEIVGL-EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             L   PI  L   E     E L++  +     +S + F+  +E   +   I+  ++ +  
Sbjct: 804  ELFAQPIKSLQKHETQMYFEILVRIRNGYGDYVSPALFIPASERYNIAHWIDKQVITQTL 863

Query: 780  RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                   +          IN++ + + + E  + +   +  +     +I L  +E+  M 
Sbjct: 864  EWFEQRPEVVEQLG-RCSINLSGQSMGNQEFIDFLLERLESSTLPCEKICLEITETAAMS 922

Query: 840  NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
            N +++  L  +L+ +G  + LDDFG+  S   YL  +P D VK +G  +           
Sbjct: 923  NLDQAIELFTKLKALGCMIALDDFGSGLSSFGYLKKLPVDIVKIDGLFVQDINVNEMDRV 982

Query: 898  ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++RSI  +AK +    +A+ +  +  ++ L  +G DY Q   +  P   + +++ L 
Sbjct: 983  MVRSINDLAKQLGKVTVAEFVENDQVMQHLIDLGVDYGQGYGIGHPKPLSELVEQLT 1039


>gi|146311566|ref|YP_001176640.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Enterobacter sp. 638]
 gi|145318442|gb|ABP60589.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Enterobacter sp. 638]
          Length = 720

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 222/434 (51%), Gaps = 13/434 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D L+ +PNR++ ++ L  +   S   D    TV+ ID+D +K +ND+ G  V
Sbjct: 295 QARRVARTDWLSHLPNRRALIEELERV---SLRGDIDVKTVVFIDLDGFKDVNDIYGHDV 351

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++++ L + + E +    +LAR+ G+ F + +  +++  +   FA  +   +  P+ +
Sbjct: 352 GDELIILLAKALRERVPQGGMLARMGGDEFAMTIGGDHSQAQALTFANDVLAFLDAPVRI 411

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
            ER I ++ASIG AS T    TSSE+ + A++AMYH+K  G   +  +      +    +
Sbjct: 412 GERTIHISASIGLASGTLIDCTSSELFRRADIAMYHSKITGKGRITQYDAELNSARERQL 471

Query: 708 --KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             + ++   +E  E  + Y PII    +++  +EAL++W     G ++  EF+ IAE   
Sbjct: 472 AIENEIRDGMERDEFDVWYQPIIDARSQKMTSVEALVRWPRRPAGELTPDEFISIAETSG 531

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I ++  F+L R   D+           + + +NI+     D E  E +  +I  T +  
Sbjct: 532 LIYSLGQFVLRRACHDL------EPFSDLKLSVNISPAQFRDPEFEEKVAKVIEMTRFPA 585

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +R++L  +E+ V+ NPER+R  +  L+ +G ++ LDDFGT  S + YL    FDT+K + 
Sbjct: 586 NRLQLEVTETYVLENPERARAAIANLKALGTAVALDDFGTGYSSIGYLRRFNFDTIKIDK 645

Query: 886 SLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL         AI  +   + +A  +   ++A+ +  E  +K L   GCD +Q    + P
Sbjct: 646 SLAGLVDNDEQAIALVSGTVRIASALGMAVVAEGVENEKQMKLLRLAGCDQLQGFWFSRP 705

Query: 944 LGFNSILKLLKERF 957
           +   +I++L K R+
Sbjct: 706 MPIEAIIELRKVRY 719


>gi|328471623|gb|EGF42500.1| sensory box/GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 1046

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 224/580 (38%), Gaps = 17/580 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 475  LFEARDITSRKLMEDKLYQRESSLRNYYEQQPVMMVTLDSHNRIQEVNRFAQLLLGYEPI 534

Query: 444  SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G           +D+  F R +L           + E   R AD    W+   IRP+
Sbjct: 535  EMLGHRLREFYL---DDKALFPRQVLLQPSHQVHDVWRREIEYRHADGHSVWVRENIRPL 591

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++S+    + + +  DI+E K   E +   A  D LTG  NR  F   L T L    +  
Sbjct: 592  NDSD----QLLIVGEDISETKLLAEKLEYQARYDLLTGTYNRNHFELELKTALREVDSHR 647

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F ++L 
Sbjct: 648  RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNSVLARMGGDEFAVLLK 706

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +    I    + +           +  + ++ S+G      +  T   +   A+ A +
Sbjct: 707  DCDEYGAINIAKVIISTLGEHLFIWEDTRLFISCSVGIRIIDHTAETPQMVHAQADSACH 766

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEE-IVG 737
             AK +G N    F + +    R  ++      +  A+ N  L L    ++ L   E ++ 
Sbjct: 767  AAKEQGRNRYNLFSLDNEELQRRQMEMQSVNLVHEALSNQRLELFAQRVMNLQSPESLMY 826

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +S + F+  +E   +   I+  ++ +         D          
Sbjct: 827  FEILVRIRDAQGNYVSPAIFIPASERYNIAHWIDKQVINQALEWFEQRPDVVEKLG-RCS 885

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + + E  + +   +  +     +I L  +E+  MGN +++     R + +G  
Sbjct: 886  INLSGQSMGNQEFIDFLFERLKNSTMPCEKICLEITETAAMGNLDQAIDFFTRAKSLGCM 945

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 946  IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEMDRVMVRSINDLAKQLGKVTVA 1005

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +  E  ++ L  +G DY Q   +  P     +++ L  
Sbjct: 1006 EFVENEQVMQHLIDLGVDYGQGYGIGHPKPLAELVENLSS 1045


>gi|254456881|ref|ZP_05070309.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207085673|gb|EDZ62957.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 621

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/443 (26%), Positives = 219/443 (49%), Gaps = 16/443 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
             L+     A+ D LT + NR+ F++ L   + L   +D+    +++ID+D +K IND L
Sbjct: 178 NYLQKSKFQAYHDYLTKLGNRRYFIELLENAIKL-QKNDHKYVYLLLIDLDHFKTINDTL 236

Query: 584 GIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSL----KIADFAIAMR 638
           G  VGD +L  +  R+  + K     ++RL G+ F I+  +  +          FA  + 
Sbjct: 237 GHDVGDLLLCEVANRMSMISKKHGAHVSRLGGDEFCILSSTCRDKDVCLNNAIAFANELL 296

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            SI     + E  + ++ASIG +   + K+ +   +K A++AMY AK +G + V  F   
Sbjct: 297 DSIKQTYVIQEHHMYISASIGVSIIDNPKMKAGTFIKEADIAMYEAKSQGRDGVMIFNDE 356

Query: 699 --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  ++ I+  L  A+EN+E+ L Y P +   + E++G E L++W +   G +   E
Sbjct: 357 LSIRVERKLEIERFLHFALENNEITLQYQPQLN-SNSEVIGCEVLVRWHNEHLGQVGPDE 415

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+   I  +  F+LE   +    W  +       + INI+ + +  N   + +  
Sbjct: 416 FIPIAEQTGFIVELGYFILEEAFKTFSDWDKKGIYLE-QLSINISMRQMFHNTFTDDVAK 474

Query: 817 LISKTLYSP---SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           L  K   +P   S++    +E+ V  +  +    + ++++ GI  ++DDFGT  S LSYL
Sbjct: 475 LCKKY-LNPKLSSKLMFEMTETSVAEDITKLINTMNKIKQCGIRFSMDDFGTGYSSLSYL 533

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             IP D +K + S +    +   +  ++++I+ +AKN+  +I+A+ +  ++  + L    
Sbjct: 534 RQIPIDELKIDKSFIFELDDTSKSTNMVKTILNIAKNLNLSIVAEGVETQLQKEFLIEEK 593

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD +Q  H + P+  +   K ++
Sbjct: 594 CDILQGYHFSKPVDKHEFEKYVQ 616


>gi|86144747|ref|ZP_01063079.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor [Vibrio sp. MED222]
 gi|85837646|gb|EAQ55758.1| diguanylate cyclase/phosphodiesterase (GGDEF &  EAL domains) with
           PAS/PAC sensor [Vibrio sp. MED222]
          Length = 526

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 218/450 (48%), Gaps = 8/450 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++   + I   A+ D+LT +PNR  FL  L  +L+      N R TV++IDI +++ IN
Sbjct: 76  QRRALTKEIETLAYYDSLTKLPNRLGFLRSLDELLNKHKE-KNERITVLIIDIKRFRDIN 134

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILI--SENNSLKIADFAIAM 637
           + LG   GD +L+ L  R+       D  LARL  N+F I +     N       F   +
Sbjct: 135 NTLGYKAGDTILLHLANRLSACATMVDFNLARLDENKFCIAVPAKEHNGDQGSDAFFAML 194

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++  I + E +I + A++G    ++   +SSEML  A +A+Y +K +G +     + 
Sbjct: 195 IDVVSNEIIIDENKIKLVANLGATCSSNGAQSSSEMLIQANIALYVSKEKGDDITVKHQP 254

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +    R+ + +++  A+EN E    Y P   L    I+G EAL++W  P    +   
Sbjct: 255 ELSNAALRRITLIKEINNAIENREFIPYYQPQFCLKTNRIIGAEALMRWKKPNGDLVRPD 314

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE+  +I  +   + E+   D   W++   +  + + +NI+S    +  + +  Q
Sbjct: 315 LFIELAEQSHLIIPMGAHIFEQATTDCQQWQNHKALAGVKVAVNISSIQFSEQNILDLTQ 374

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + KT  SPS ++L  +ES ++G+  +   +L  L+K+ I + LDDFGT  S LSYL  
Sbjct: 375 LTLEKTGLSPSLLELEVTESAMLGDVSKVVAVLNDLKKLNIEIALDDFGTGYSSLSYLKL 434

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K +   +          AIL  I  +A  +   ++A+ I  +  ++ L R GC 
Sbjct: 435 LPIDRLKIDREFVKDLLSNTDDQAILSMICKLATELSLNVLAEGIEEKEQLEFLGRAGCH 494

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +Q  + A P+  +  +   K     + NT
Sbjct: 495 EVQGFYFAKPMPLDDFVLFAKNHNSELINT 524


>gi|167567048|ref|ZP_02359964.1| hypothetical protein BoklE_31101 [Burkholderia oklahomensis EO147]
          Length = 807

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 243/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 220 FAASLFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 279

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADN 490
                +LG ++ +  G   + +  +   +      I+D F     R  ++ E  +   D+
Sbjct: 280 NAAEQLLGYSAAACVGAPVSSVLMLLDKETGLAVDIVDEFWARDVRTPIKREVHLLRRDH 339

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 340 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 399

Query: 551 LTTILDLSATD-DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L  + +  D     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 400 LEIALADATSGKDRADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQNCLDDEDVL 459

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 460 ARLGGDEFGVLLPYGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 519

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+E     L  
Sbjct: 520 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALETDGFRLFV 579

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+      +     E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 580 QPIVHTRPDSQTPERAEVLLRMTDGAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 639

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            + R +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 640 SALRTREYHE---YNVNLSGASISDERFVEFVIAELLSSGLEPSVICFEITETIAVKNLE 696

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +  LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 697 LASRFMSELRTIGCRFALDDFGAGMSSFRYLRNLPIDYLKIDGEFVSNMMSDRVSYGVVS 756

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++    +A+ +  ++++  L  +G D+ Q    A P  
Sbjct: 757 AINEVAHSMRCNTVAEHVESDVELGMLRELGIDFCQGYFFAKPSP 801


>gi|146280932|ref|YP_001171085.1| GGDEF domain/EAL domain-containing protein [Pseudomonas stutzeri
           A1501]
 gi|145569137|gb|ABP78243.1| GGDEF domain/EAL domain protein [Pseudomonas stutzeri A1501]
          Length = 710

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 219/440 (49%), Gaps = 11/440 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +      D LT + N ++F + +T +L  +A ++     V+V+D+D +K+IND LG
Sbjct: 272 AEHQLNAMTHYDPLTNLFNGRAFTEMVTQVL--AAREERQALAVLVVDLDNFKRINDSLG 329

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD  L    +RI  +L   D+LAR SG+ F ++ +           A  +   +  P
Sbjct: 330 HRSGDLALQQAAQRIRAVLGQHDMLARFSGDEFCVLTLGAW--EHAQATAERILDQLRPP 387

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
             L + ++ +TASIG + +    +    + ++A LA+   K  G N    F         
Sbjct: 388 FVLGDTQLRLTASIGISQYPEDGLNFDALFRHAGLAVGQCKVSGRNRSLRFNPALELRAQ 447

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + + +++DL  A+  + L + Y PI+       V LEAL++W HP+ G IS   F+ +AE
Sbjct: 448 EDLSLEQDLRRALNENLLSVHYQPIVDGRSGRPVSLEALVRWQHPQQGFISPERFVGLAE 507

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   +  ++ ++  R   D++   +      + + +N ++ +L + ++   +  ++ +T 
Sbjct: 508 QHGFVAELDTWVARRACADLVGLLE--GGHDLRMAVNCSALNLSNPQMPAVVARILERTG 565

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+R+ +  +E+ +M +   +   L  +R++G+ +++DDFG+  S L+YL  +P DT+K
Sbjct: 566 LEPARLTVEVTENALMNSLGAAIRTLDAVRELGVKVSIDDFGSGYSSLTYLRQLPVDTLK 625

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +    E     AI  +II MA  +   ++A+ +   + +  L   GCD+IQ  + 
Sbjct: 626 VDRAFVREIAEQANDRAITAAIIAMAHKLGLKVVAEGVEEAVQLDYLRENGCDFIQGYYY 685

Query: 941 ASPLGFNSILKLLKERFPLV 960
           + PL   ++   L ER PL 
Sbjct: 686 SRPLPLPALRDWLAER-PLT 704


>gi|78048416|ref|YP_364591.1| putative signalling protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036846|emb|CAJ24539.1| putative signalling protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 788

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 213/442 (48%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  ++D +         V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ ++  +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAASVQQDAQRLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +  I + ASIG A           +L+ A++A              +R+        
Sbjct: 463 VLPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLR 522

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            ++   DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 523 RLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L++  R    WR Q       + IN+++ DL D  L + ++  +     
Sbjct: 583 SGVIHPLTRFVLDQALRCQAQWRKQGLELG--MAINLSALDLSDPGLPDFVRGCLEHHAV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K 
Sbjct: 641 PAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKI 700

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 701 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENAAALALLRGYGCDMVQGYLYS 760

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 761 PPLEEAPLVAWCMRQLGITTPA 782


>gi|213971110|ref|ZP_03399229.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|301381873|ref|ZP_07230291.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060566|ref|ZP_07252107.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302132841|ref|ZP_07258831.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213924099|gb|EEB57675.1| HAMP domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 784

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 210/430 (48%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + I+  K I++      
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSSIAADR-----PVALLYMGIENLKTISESSNAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L  + +R+    +  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VDQLLRQVGQRLQSNSRAGDTVARLSANEFLLLLDNTAS-DGAVGIADALQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
              +  +   IG   +     ++ E++  A +A   A    G   +           ++ 
Sbjct: 466 DNHDYALECCIGITVYPEHGDSAQELVNRAAIARKDATFLPGRLQIYQDGRDVAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ + +    
Sbjct: 586 INLLTTWVIEEAIRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYVLPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRDLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
              +    + 
Sbjct: 764 TAGAFEAWIA 773


>gi|209550668|ref|YP_002282585.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536424|gb|ACI56359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 601

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/580 (23%), Positives = 246/580 (42%), Gaps = 41/580 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q       R  LA+  S   VW+  I    +     +  +          P   W   I
Sbjct: 19  EQEFQDLLRRLELALDASRIGVWEHSIATSGILWDAQMHRLYETGETCREVPAWLWSNAI 78

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +DR+      D  +  R G    +FR+     +   +  R     ++ G    +IG  
Sbjct: 79  HPDDREQAEYDFDQAIATR-GAYNSQFRIVLPSGEIRHLRSRAHFYVDAEGLPS-FIGAE 136

Query: 517 NDITE---------------------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            D+T                       ++S   I   A  D LTG+PNR+    RL  + 
Sbjct: 137 WDVTADVLLNAELAGQKMVAEARALALEESNARIEHVADHDYLTGLPNRRLLDKRLAEL- 195

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
              A        V+ +D+D++K+IND  G A GD VL +   RI   +    ++AR+ G+
Sbjct: 196 --PADRSITTLGVLHLDLDQFKQINDSHGHAAGDAVLRAAALRITAAIPANGMVARVGGD 253

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+L++ ++  ++      +++ +   I   +  +   ASIG +        +  +L 
Sbjct: 254 EFVIVLVNFSDLAELKLITDDLQRRLRKKIRFGQEMLQSGASIGVSWS--GDRRARSLLA 311

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            ++LA+Y AK  G N VE F           + E+L L +E  E+   Y   +     E+
Sbjct: 312 ESDLALYQAKKLGRNRVEFFTRQ-----LRRLAEELKLGLERGEIVPYYQVQLDARTREV 366

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EAL +W HP+ G ++   F+ IA+E  +   I+  +L+ +  D + W  Q    P  
Sbjct: 367 IGFEALARWKHPEKGVLAPGIFLKIADEHGLAAEIDAAILKNVLEDRLFWLLQGFAVP-R 425

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKI 854
           I +NI++  L D  L   ++ L       P  I     E++ + + +      +G ++++
Sbjct: 426 IAVNISASRLADPTLLGKLRKL----DIPPGVIVFELVETIFLDDSDEKLLDHIGDIKQM 481

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETT 912
           GI + +DDFG+  + L  L  +    +K +  L+    S+ ++  ++ SI+ +AK ++  
Sbjct: 482 GIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLIAEVVSSAEQRRVVGSIVEIAKALDVE 541

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +IA+ I  E     L ++GCD +Q      P       +L
Sbjct: 542 VIAEGIETEAHAVVLAQLGCDGLQGYAFGYPAPAAETARL 581


>gi|90023003|ref|YP_528830.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89952603|gb|ABD82618.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 616

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 224/440 (50%), Gaps = 16/440 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I ++K++ E +      D LT +PNR+SF+  L   L+ +     L+  V+ ID D++K 
Sbjct: 163 IDDRKRAEEVVRFQLLHDELTQLPNRRSFMRHLDE-LNSTYNARKLKAAVLFIDFDRFKT 221

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADF 633
           +ND LG AVGD +L ++ +   +L++  +++ARLSG+ F I+L       +     + + 
Sbjct: 222 VNDTLGHAVGDSLLQAIAKTFIKLVRSHEMVARLSGDEFVIVLSETEQQNQSVYQIVENT 281

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              ++ + + P+   E  + +T SIG   + +   TS ++L++A+ AMY AK +  N   
Sbjct: 282 LSNIQLAFSNPLQAGEHLLHITPSIGVEFFPNKNYTSEQILRHADTAMYVAKSQAPNSAV 341

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  S          I++ L  A++   +  L+Y P       + +G EAL++W      
Sbjct: 342 IYDRSMSVELEHRQFIEKQLQQAIKEPEQFGLLYQPQFNAR-GDCIGAEALVRW---NGQ 397

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNE 809
           N+S  EF+ +AE+  ++  +   +L R   D+   +D++    +  I +N+++       
Sbjct: 398 NLSPEEFIPVAEDTGLMLELGHQILSRACHDLKQLQDESATGHVKRISVNVSALQFNQRN 457

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               + ++IS    +   I +  +ES ++ N + +   +  L ++GI +++DDFGT  S 
Sbjct: 458 FISELTSIISNAEANSHLIGIEITESALVKNTDEAIKKIAALSEMGIRVSIDDFGTGYSS 517

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P + +K + + + G       +AI+ +I+ +  +I  +++A+ +  + D++ L
Sbjct: 518 LAYLNRLPVNALKIDQTFVKGIAKDANNLAIVETIMALGHSIGLSVMAEGVENDADLQCL 577

Query: 928 TRMGCDYIQDSHVASPLGFN 947
            R+GC+  Q  +   P+   
Sbjct: 578 KRLGCELYQGFYFGKPMPLA 597


>gi|330989023|gb|EGH87126.1| diguanylate cyclase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 784

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 215/430 (50%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL +++  + T       ++ + I+    IN+  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSLIAANRT-----VALLYLGIENLATINESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  L +R+   L+  D +ARLS N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VEQLLRQLGQRLQGNLRSGDTVARLSANEFLLLLDNTAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              ++ +   IG   +     ++ E++  A +A    A   G   +           ++ 
Sbjct: 466 DNHDLMLECCIGITVYPEHGDSAQELVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQNGELMLHYQPKLDIRQGYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALVVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|152999212|ref|YP_001364893.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|151363830|gb|ABS06830.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS185]
          Length = 646

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/420 (24%), Positives = 196/420 (46%), Gaps = 6/420 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR + ++ L+++L+     +    +V+ + +  +K IND  G  +GD +L  
Sbjct: 222 YDPLTGLPNRINLINSLSSMLEEVNRKEK--ISVLYLGLRNFKSINDSYGYLIGDKILTI 279

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++R+         +AR++G  F II   + ++ +       +      P  + +  IT+
Sbjct: 280 LSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITI 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCL 713
            +S+G A      I ++ +L+ A  AM  +K  G  H    + +    +    ++  L  
Sbjct: 340 PSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVD 399

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   EL L Y P I L  ++++G EAL++W +P  GN++   F+ +AE    I  I  F
Sbjct: 400 ALNKKELSLHYQPFINLKTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNF 459

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         W  +       I INI+   + +    E +  L++     P+ ++L  +
Sbjct: 460 VLHTALAQAAKWCREL-DQEFKIAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEIT 518

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E ++M +   +   + +L+++GI ++LDDFGT  S LSYL    FDT+K +   +     
Sbjct: 519 EGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEE 578

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E+   + ++II + K +   +IA+ +        +    CD  Q      P+  +   +
Sbjct: 579 NEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEFEQ 638


>gi|296533368|ref|ZP_06895967.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296266294|gb|EFH12320.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 742

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/575 (20%), Positives = 230/575 (40%), Gaps = 23/575 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + + A       +    ER       +    W+     D    + ++  I  L       
Sbjct: 177 RSLAALSARKTRLLQQTERL------AQLGGWELSRQGDGPLWSDEVFRIHELP---FGH 227

Query: 448 PIRNWLPYIH--INDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           P+      +H    DR+     +++     R   L+ +F    A  +   + +   P  +
Sbjct: 228 PVTITGALLHYPPGDRERVAAAIEAIFAEGRTAELEADF--VTATGRLRRIRLSGEPERD 285

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
             G ++R +G+  DITE  +  + +   A QD LTG+ NR   L RL   L  +     L
Sbjct: 286 QQGQVVRAVGLIQDITEAWQLRQRLQLLAMQDPLTGLANRAQLLQRLEAALQQTPPGGAL 345

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++   +D ++ +ND  G   GD +L  +  ++        + AR   + F ++L   
Sbjct: 346 ALLLLD--LDNFQDLNDRHGHLQGDALLRGIAGKLLASAGGQGMAARTGSDEFALLLP-V 402

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +       A  + +++  P+ L    + V+ASIG A       T   +++ A++A+ H 
Sbjct: 403 TDEAGARQRAELVGEALRQPLLLEGVPVGVSASIGVALGPRDGDTGEMLMRQADIALSHG 462

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           +  G   V  F     +      +    + LA+    +   Y P +R+ D    G EAL+
Sbjct: 463 RRLGRGRVTLFSPEIAQRFLARREAIELVRLALHEGWVRPFYQPKLRMADGRRCGFEALV 522

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +   P    +   +F    +E    + +   ML  +  D+  WR+     P+   +N++ 
Sbjct: 523 RILPPDGRVLGPGQFWAALQEEETARLLGQHMLRAVCADLRRWREAGLA-PVRAGLNVSE 581

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLD 861
            D +   L + + A ++     PS + +  +E+V++          L RL   GI+++LD
Sbjct: 582 ADFIGGGLAQNVMAQLALLDLPPSALTIEVTETVLLSEAAPAVIGALSRLHAGGIAISLD 641

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  + L++L   P   +K + S +    E      I+ SI+ +A  +   ++A+ + 
Sbjct: 642 DFGTGHASLAHLRDFPIQELKIDQSFVARLEEDARNGRIIGSIVELAHGLGLRVVAEGVE 701

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                  L R+GCD  Q      P+        L+
Sbjct: 702 TAAQHAALQRLGCDEGQGFLYGRPMPAARAEAWLR 736


>gi|88800590|ref|ZP_01116151.1| sensory box sensor/GGDEF/EAL domain protein [Reinekea sp. MED297]
 gi|88776645|gb|EAR07859.1| sensory box sensor/GGDEF/EAL domain protein [Reinekea sp. MED297]
          Length = 619

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/476 (24%), Positives = 227/476 (47%), Gaps = 18/476 (3%)

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +  A   +       R +     +I++           ++S + +   A  D LTG+PNR
Sbjct: 154 LLCAFGTYVMSRDNSRLVEGLQTEIVKV----------EQSHQEMTYLANHDVLTGLPNR 203

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            S       +       ++    V  ID+D++K++ND LG  VGD  LV ++ R+ E L+
Sbjct: 204 TSAEMAFNAMTKRLGRQEDTLAAVFFIDLDEFKEVNDTLGHDVGDQYLVQVSDRLQEALR 263

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D + R+ G+ F + L +      +   A  +R ++++P+ + ER I  + SIG     
Sbjct: 264 TTDQIFRIGGDEFLLFLENIKQIDDLVTIAEKLRANLSLPVTVDERLINCSGSIGMVVVP 323

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
           +   +  E +K A++AMY +K  G N    +     +   DRV  + D+  A+   +L +
Sbjct: 324 TDADSYQEAVKRADIAMYRSKESGKNCFHFYNPDMEQDLQDRVDFQNDMQQALVERQLRV 383

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + PI+ +  E+I+G EALI+W HP+ G I+  +F+ +AE+  +I  ++ F+LE     +
Sbjct: 384 QFQPIVSMDQEQIIGAEALIRWQHPQKGLIAPYQFISLAEKSDLINDLSRFVLEEACSLL 443

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                    P  +I +N++   L    L   +         +P  +KL  +ES ++ + +
Sbjct: 444 ADILPA--HPDFYISVNLSPVQLRFPGLTSRIMTP-RAIELAPH-LKLEVTESQIIESMD 499

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900
             R  +  +R++G  L LDDFGT  S L +L  + F+T+K + S +        ++ ++R
Sbjct: 500 TFRQNVEAIRELGFGLFLDDFGTGYSNLGHLQKLQFETLKIDRSFIQNIHERPDQLPLVR 559

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I  +AK++   ++ + +  + ++  L ++     Q    + PL   ++   L+++
Sbjct: 560 GITNLAKDLGLKVVVEGVETQAELAALRQLDIANGQGYFWSRPLDIPALKTCLQDQ 615


>gi|116250686|ref|YP_766524.1| GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255334|emb|CAK06409.1| putative GGDEF/EAL sensory box protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 454

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 220/444 (49%), Gaps = 10/444 (2%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI         +   A+ D LTG+ NR    D++   +      D    T+ ++++D +K
Sbjct: 6   DIAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQ-ISAERASDPAPFTIGIVNLDSFK 64

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G   GD++L  +  R+   +    ++ R  G+ F  +L           F   +
Sbjct: 65  PINDLFGSTAGDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMI 124

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R+ ++ P +L  R + ++AS+GF+ +  +     E+LK+AE A+Y +K RG   +  +  
Sbjct: 125 REVLSAPYDLGNRNVRLSASLGFSIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSR 184

Query: 698 SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +  +    +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S  
Sbjct: 185 EIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPG 244

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE   I A++  +L + A   +SW  +     +F+  N++S  L+D      + 
Sbjct: 245 VFVPLAEERGFIDALSEALLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSSSVL 299

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +++ +  + P R++L  +E+ VM + + +  ++  LR  G+ ++LDDFGT  S L  L  
Sbjct: 300 SILGRVGFDPHRLELEITETAVMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRD 359

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             FD +K + + ++     R +  I+++I+ M + +E  ++A+ I    +  +L  +GC 
Sbjct: 360 FIFDKIKIDRAFVSRINSDRASEHIIKAILTMCEGLELEVVAEGIEDYAEAVKLRTLGCG 419

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q  H   P    + L+ L E +
Sbjct: 420 MGQGYHFGRPADGIATLRFLHENY 443


>gi|329849364|ref|ZP_08264210.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328841275|gb|EGF90845.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 456

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 209/445 (46%), Gaps = 17/445 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S    +  A+ D LTG PNR +F   L+  L     +     ++ +ID+D++K +ND  
Sbjct: 23  ESEARAVHAAYHDFLTGAPNRAAFQRELSQRL-----NHEAPYSLALIDLDRFKYVNDTY 77

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD ++  +T R+   L     LARLSG+ FG+IL   ++          +  + A 
Sbjct: 78  GHAAGDALICDVTDRLRATLPLDAFLARLSGDEFGLILA-ADDGETAEAACQQVMDACAA 136

Query: 644 PINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             ++    I + ASIG      S     +++++ A++A++ AK  G N +  F  S   +
Sbjct: 137 GFDVNGNTIQIGASIGLFLGQDSGLRGVTDLMRCADIALFAAKRAGRNRICRFDKSLDDN 196

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    I+  L  A+   EL L Y PII      + G EAL++W   + G +S + F+ I
Sbjct: 197 LRRRRAIEAGLSKAIAGKELELHYQPIIDGNTLNVAGFEALLRWKSAELGQVSPAVFIPI 256

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I++I  +++ +   D   W  Q      ++ IN++++     ++ + ++     
Sbjct: 257 AEESGLIRSIGDWVIRQALNDCCDWPQQ------YVAINLSARQFNGADMVQILRGHADT 310

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R+ +  +E+    +   +   LG L+ +G  + LDDFGT  S L  +   P D 
Sbjct: 311 AGVPYHRVHIEVTETAFFEDARGAAETLGALQSLGFGIALDDFGTGYSSLFSVKNFPLDV 370

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +   G   +   I+ ++I +A+ +   ++A+ +  E   + L  +GC ++Q  
Sbjct: 371 IKIDKCFIDGLGLEPQAAPIISAVIHLARGLGLKVVAEGVETEDQRQALQLLGCSHLQGY 430

Query: 939 HVASPLGFNSILKLLKERFPLVKNT 963
             + P   + IL  LK R    + +
Sbjct: 431 LFSKPQSRSHILTWLKARQTAERKS 455


>gi|218665522|ref|YP_002426132.1| diguanylate cyclase, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218517735|gb|ACK78321.1| diguanylate cyclase, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 665

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 219/438 (50%), Gaps = 9/438 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                +D LT +PNR  F+D L    + +   + L   V ++D+D +K++ND LG   GD
Sbjct: 107 RNQFLRDPLTALPNRFLFMDFLENARNQTLRHERL-LGVAILDLDGFKQVNDRLGHGAGD 165

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL ++ +R+   L+  DILARL G+ FG+IL        +   +  +  ++  P+ +  
Sbjct: 166 QVLQAVVQRLQVQLRAGDILARLGGDEFGLILPDLERLDDLDGVSERLLAALREPLEIDG 225

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
              +VT S+G   +      +S ++++A++A+Y AK  G +  +   ++   + R     
Sbjct: 226 EAASVTGSLGITLFPLDDSDASTLIRHADMALYAAKDAGRDQFQLHSLALDEAMRTEAGT 285

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++ + L L Y P++      ++G+EALI+  HP+ G I  + F    + + + 
Sbjct: 286 RALLEQALQENRLVLYYQPVVS-SAGAVIGVEALIRLQHPERGLIPPAAFFSALDHVRLA 344

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPS 826
           + I  F+L         W++  +  P+ + +NI+++ LLD    E +Q +++K     P 
Sbjct: 345 RPIGRFVLNVALHQAALWQEAGH--PLRVSVNISTRHLLDARFLEDLQEMLAKYPGLRPE 402

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  +ES  + +   ++ LL    ++G+ + LDDFGT  + L+YL  +P D++K + S
Sbjct: 403 LVEIEITESAPLRDMLEAQRLLVACHRLGVRVALDDFGTGNASLTYLQRLPADSIKIDQS 462

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +       K +AI+ ++I  ++ +   +IA+ +     +  L + GC+++Q    + P+
Sbjct: 463 FVRDVIDDPKDLAIVTAVITASRMLGMNVIAEGVETADHVDLLVKTGCNHLQGYFFSKPI 522

Query: 945 GFNSILKLLKERFPLVKN 962
               +   +    P  + 
Sbjct: 523 PAEDVPAWVAHFRPAPRT 540


>gi|241203288|ref|YP_002974384.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857178|gb|ACS54845.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 454

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 221/444 (49%), Gaps = 10/444 (2%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI         +   A+ D LTG+ NR    D++   +      D    T+ ++++D +K
Sbjct: 6   DIAFLTVGQNELQAMAYTDPLTGLGNRNRMRDKVLQ-ISAERASDPAPFTIGIVNLDSFK 64

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G   GD++L  +  R+   +    ++ R  G+ F  +L           F   +
Sbjct: 65  PINDLFGSTAGDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMI 124

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R+ ++ P +L +R + ++AS+GF+ +  +     E+LK+AE A+Y +K RG   +  +  
Sbjct: 125 REVLSAPYDLGDRNVRLSASLGFSIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSR 184

Query: 698 SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +  +    +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S  
Sbjct: 185 EIAQEMKRATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPG 244

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE   I A++  +L + A   +SW  +     +F+  N++S  L+D      + 
Sbjct: 245 VFVPLAEERGFIDALSEALLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSSSVL 299

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +++ +  + P R++L  +E+ VM + + +  ++  LR  G+ ++LDDFGT  S L  L  
Sbjct: 300 SILGRVGFDPHRLELEITETAVMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRD 359

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             FD +K + + ++     R +  I+++I+ M + +E  ++A+ I    +  +L  +GC 
Sbjct: 360 FIFDKIKIDRAFVSRINSDRASEHIIKAILTMCEGLELEVVAEGIEDYAEAVKLRTLGCG 419

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q  H   P    + L+ L E +
Sbjct: 420 MGQGYHFGRPADGIATLRFLHENY 443


>gi|78048529|ref|YP_364704.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036959|emb|CAJ24659.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 801

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 218/586 (37%), Gaps = 15/586 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 215 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 274

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          +H  D           + + +     E R   AD   
Sbjct: 275 SMANVLLYRPEEL--QACTLAEVMHPEDIKLDS---RGMLDWPKLLQSGELRFVRADGGV 329

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 330 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 389

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 390 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRSGDWLGRL 448

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M   +  P +    R +T + S G           +
Sbjct: 449 GGDEFAILLAN-TDLAQAQAVLERMHGVLGQPWSHQGGRPLTPSCSFGVVEIRHGVSDLT 507

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
            ++  A+LA + AK  G N V  F  +     +          +  A+    L L    I
Sbjct: 508 TLMTAADLACHAAKEEGRNRVRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKI 567

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L D   +  E L++        +S  EF+   E   + + ++ ++LE +   + +   
Sbjct: 568 QVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLAANPM 627

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
              M  +   +N++++ +   +  + +  L  +      ++ +  +E+ V+G+ E ++  
Sbjct: 628 HVAMLDL-CHVNLSAQSIAQPDFLDVVCTLFERYPALVPKLCMEITETAVIGDLEHAQRF 686

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  +R  G  + LDDFG+  +   YL     D +K +   +          A + SI  +
Sbjct: 687 VQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQV 746

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +   ++A+ +  E DI  L   G   +Q   +  P     +L 
Sbjct: 747 GLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLH 792


>gi|226939958|ref|YP_002795031.1| hypothetical protein LHK_01030 [Laribacter hongkongensis HLHK9]
 gi|226714884|gb|ACO74022.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Laribacter hongkongensis
           HLHK9]
          Length = 404

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 192/391 (49%), Gaps = 10/391 (2%)

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIA 631
           +D +K +ND  G   GD +L  +  R+   ++  D ++RL G+ F ++L     +    A
Sbjct: 1   MDNFKFLNDTQGHDKGDQLLQQVASRLRNQVRETDTVSRLGGDEFVVMLEGLGADIADAA 60

Query: 632 D----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                    +  S+  P  L       T+S+G   +     +  E+LK A+LAMY AK  
Sbjct: 61  TYTRSIGDKVLASLQAPYELGCYVHHCTSSMGVTLFRGRDNSVEEILKQADLAMYEAKAA 120

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N +  F  +  ++      ++  L  A+E  +L L Y   +   D +++G EAL++W 
Sbjct: 121 GRNTLRFFDQTMQKAVDERADLEGHLHQAIERQQLELHYQIQVD-DDGQVLGAEALLRWH 179

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +S + F+ +AE+  +I     ++LE   R ++ W     +  + + +N++++  
Sbjct: 180 HPQHGMMSPAVFIPVAEQSDLIVRFGNWVLETACRRLVQWAADPALARLTLAVNVSARQF 239

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              E    +  ++  T    SR+KL  +ES+++G+   +   +  L+  GI  +LDDFGT
Sbjct: 240 RQPEFVGHVLRILENTRAPVSRLKLELTESLLIGDIHDTISKMNTLKAHGIGFSLDDFGT 299

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P D +K + S ++   ++    AI+R+I+ +A  +   +IA+ +  E  
Sbjct: 300 GYSSLNYLRRLPLDQLKIDRSFVSDVAQEPVDAAIVRTILALANTMGLAVIAEGVETEAQ 359

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              LTR+GC   Q      PL  +  + L++
Sbjct: 360 RTFLTRLGCHAYQGYLFGRPLPEDEFIALVR 390


>gi|27366597|ref|NP_762124.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27358163|gb|AAO07114.1| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 630

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 201/444 (45%), Gaps = 7/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  +   +  +   D LT +PNR +  D L     +++ +DN + T++   +  
Sbjct: 186 LTEIEQRTAAESHLDFHLHYDPLTKLPNRITLADDLAE--QMASLEDNEQITLIYFSLKN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N   G   GD +L SL++RI   L     LAR+ G+ F +                
Sbjct: 244 FKFVNASYGYMFGDQILSSLSQRICHKLPKKWKLARIVGSDFVLAAQHLRKPEIQEQVIE 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + K+   P N+ +  + +   +G A        S  +++ A  AM   K+ G      +
Sbjct: 304 RITKACTQPFNVNDMSVNLQCHLGVALAPMDATDSFSLIQRACSAMSEGKNEGLQVSYFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
           F       +R+ ++  L  A++N+EL + + PII      +I+G EAL++W++P  G +S
Sbjct: 364 FAAQKAAEERLQLESHLSEALKNNELEVHFQPIICLKQGGKIIGAEALLRWNNPTLGQVS 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  +   +W   +      + INI+     +    + 
Sbjct: 424 PDRFIPLAESNGQIIEIGYFVLHQALKQAAAWHRASPH-AFKVAINISPIQFRERHFVQH 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q +I         I+L  +E +++ + E ++ +L +LR+ G+S++LDDFGT  S LSYL
Sbjct: 483 LQDIIDLYQLPAKCIELELTEGILLQDEEYAQNVLAQLRQFGVSISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      +    + R+II MA  +   +IA+ +        +    
Sbjct: 543 QKYAFDTLKIDRSFINQLEHNQHNRELTRAIIAMAHKLNMMVIAEGVEDRYQEDFIRTEE 602

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+Y Q       +  +   + L  
Sbjct: 603 CNYAQGFLYGKAVPADDFSQQLAS 626


>gi|85712243|ref|ZP_01043294.1| sensory box protein/GGDEF domain protein [Idiomarina baltica OS145]
 gi|85693870|gb|EAQ31817.1| sensory box protein/GGDEF domain protein [Idiomarina baltica OS145]
          Length = 537

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 136/558 (24%), Positives = 239/558 (42%), Gaps = 34/558 (6%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER  +    S   +   D  R           +L           R    ++  +D+  F
Sbjct: 6   ERYEI-FDNSRIAIVIVDSDRIVTFANQGAQDLLANKVD----IGRQLGVHLPNDDKQFF 60

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            +               E        Q  +           NG+   ++   +    +  
Sbjct: 61  SSSFQ----------PNEI-----SGQPIYYCAIAVV---DNGE-QHFLIYLHPFNMKLS 101

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   A  D LTG+PNR  F+ RL      S   +     V+ ID+D +K IND LG
Sbjct: 102 GTEHLPFLAQHDPLTGLPNRNQFIKRLQRHCS-SDACEKTLTAVVFIDLDGFKAINDSLG 160

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L  +  RI   L+  D L RLSG+ F IIL         A     +   +A P
Sbjct: 161 HEMGDKLLQVVAGRIRNQLRNSDTLTRLSGDEFLIILTGLEARQDAATVTQRILDDLARP 220

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
             +   ++ +TAS G          +  M++ A++AM+ AK  G N  + F    +   +
Sbjct: 221 YKIDSTDLYITASAGLTYCQDRTARAEIMIQQADIAMFEAKRAGRNTFQWFDKALNDEVN 280

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             ++I+  +   ++  + +LVY P I L  E + G+EAL++W HP    +S +EF+ I E
Sbjct: 281 RALLIRNTVQKGLDKQQFHLVYQPQICLEAETVCGIEALVRWRHPDIDGLSPAEFIPILE 340

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIASKDLLDNELCEGMQALISK 820
               I  ++ +++ +   D   W            + +N+++  +  ++  E ++ ++ +
Sbjct: 341 SSGQIIPLSYWIMRQAFSD---WHKIKPYLAEGARVSVNVSTVHISRSDFIEQLERVMLE 397

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   PS IKL  +ES+++ N + +   L +L   GI++ LDDFGT  S L YL  +P   
Sbjct: 398 TNIKPSDIKLEITESMMLRNAQTAVATLDKLADKGIAIALDDFGTGFSNLRYLTQMPISD 457

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + S +          AI+R I  M+  +   I+A+ +    +  E+ ++  D +Q  
Sbjct: 458 VKLDRSFIRDIDTHKANQAIVRGITSMSHELGLKIVAEGVETLSEKAEVKKLQADIMQGY 517

Query: 939 HVASPLGFNSILKLLKER 956
             A+PL F  +++ L +R
Sbjct: 518 LEATPLRFEPLIEFLTKR 535


>gi|222640395|gb|EEE68527.1| hypothetical protein OsJ_26969 [Oryza sativa Japonica Group]
          Length = 1502

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/602 (17%), Positives = 215/602 (35%), Gaps = 17/602 (2%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             +        +++ A +    L V+ I    +      G     +     R   A   +
Sbjct: 170 AFSQALLRMATLVRLATLMVAGLSVLAISLMAVALARRVGK---DLTEHESRFRAAFYQA 226

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              +   D     +     +A IL      +       L      D +     +   + +
Sbjct: 227 NVGMLKLDTEGKVIEANQAMADILDHRRDVLLQLSLADLLM----DGELVIDGVGR-IDW 281

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
            R     E R R  D    W       + ++ G +     I  D+++       I  +A 
Sbjct: 282 DRQLRPSELRFRRRDGSLVWGRWSGTGVRSAGGGLS-VFAIIEDVSQNHALAREIEHHAS 340

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR+     L   L    ++      +  I++D +K +ND  G A GD +L S
Sbjct: 341 HDPLTGLINRREIERLLERALLQVRSEGGTH-ALCYINLDHFKLVNDSFGHAAGDQMLRS 399

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               +   ++  D + RL  + F + L               +R        + E    +
Sbjct: 400 FAEYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRVLQRVIRNLGQATFLVSEGSPQL 459

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL- 713
           + SIG    ++     + ++  A+ A Y AK  G N V  F  +    +    + +    
Sbjct: 460 SCSIGVVEVSADAPDVNWLMSAADSACYAAKQAGRNRVHCFNENRMALEERRREAERLQG 519

Query: 714 ---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A+  + + L    I R+ D   +  E L++            +FM   E   M  A+
Sbjct: 520 VSLAMAENRMVLYAQRIARVGDPTYLHYEVLVRMRGSDGSLHLPGQFMPAVERYGMAVAL 579

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  +L  + R +           +   +N++++ + +      +  L+ +     S++  
Sbjct: 580 DRHVLGLLFRHLQVCPAHVRQLGL-CNVNVSAQSIAEPGFLAFVCDLLERNRALASKLCF 638

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + N  ++R  +  ++  G  + LDDFG+  S   YL  +P D +K +G+ +  
Sbjct: 639 EITETAAISNLSQARAFIDAVKARGCRMALDDFGSGLSSFGYLRQLPADILKIDGAFVRD 698

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                   A +R+I  + + ++  ++A+ +        LTR+G   +Q   V  P     
Sbjct: 699 MDTDPVSHATVRAISELGRELQMEVVAEWVETAEVAAALTRLGVQGLQGYAVERPQPLER 758

Query: 949 IL 950
           + 
Sbjct: 759 MT 760



 Score = 75.0 bits (183), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++  + +   A  D LTG+PNR++ L +L   L+    +      +  +DID +K IND
Sbjct: 1151 LRQQRDELRQLAETDGLTGLPNRRAGLQQLARHLERVDRERG-PLVIGFLDIDLFKDIND 1209

Query: 582  VLGIAVGDD 590
              G AVGD 
Sbjct: 1210 RHGHAVGDQ 1218


>gi|153840152|ref|ZP_01992819.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149746210|gb|EDM57316.1| sensory box/ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 1046

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 224/580 (38%), Gaps = 17/580 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 475  LFEARDITSRKLMEDKLYQRESSLRNYYEQQPVMMVTLDSHNRIQEVNRFAQLLLGYEPI 534

Query: 444  SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G           +D+  F R +L           + E   R AD    W+   IRP+
Sbjct: 535  EMLGHRLREFYL---DDKALFPRQVLLQPSHQVHDVWRREIEYRHADGHSVWVRENIRPL 591

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++S+    + + +  DI+E K   E +   A  D LTG  NR  F   L T L    +  
Sbjct: 592  NDSD----QLLIVGEDISETKLLAEKLEYQARYDLLTGTYNRNHFELELKTALREVDSHR 647

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   ++ +D+D+ K +ND +G   GD  +      + E+L +  +LAR+ G+ F ++L 
Sbjct: 648  RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPYNSVLARMGGDEFAVLLK 706

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +    I    + +           +  + ++ S+G      +  T   +   A+ A +
Sbjct: 707  DCDEYGAINIAKVIISTLGEHLFIWEDTRLFISCSVGIRIIDHTAETPQMVHAQADSACH 766

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEE-IVG 737
             AK +G N    F + +    R  ++      +  A+ N  L L    ++ L   E ++ 
Sbjct: 767  AAKEQGRNRYNLFSLDNEELQRRQMEMQSVNLVHEALSNQRLELFAQRVMNLQSPESLMY 826

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +S + F+  +E   +   I+  ++ +         D          
Sbjct: 827  FEILVRIRDAQGNYVSPAIFIPASERYNIAHWIDKQVINQALEWFEQRPDVVEKLG-RCS 885

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + + E  + +   +  +     +I L  +E+  MGN +++     R + +G  
Sbjct: 886  INLSGQSMGNQEFIDFLFERLKNSTMPCEKICLEITETAAMGNLDQAIDFFTRAKSLGCM 945

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 946  IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEMDRVMVRSINDLAKQLGKVTVA 1005

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + +  E  ++ L  +G DY Q   +  P     +++ L  
Sbjct: 1006 EFVENEQVMQHLIDLGVDYGQGYGIGHPKPLAELVENLSS 1045


>gi|77748668|ref|NP_643020.2| phosphodiesterase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 788

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 211/442 (47%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  ++D +         V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ ++++ P+++ RL  + F ++++++ ++  +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLVDVVQEPNLVGRLGSDEF-MVVVAQADAASVQQDAQRLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +  I + ASIG             +L+ A++A              +R+        
Sbjct: 463 VLPQARIQLEASIGIVLIPEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLR 522

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            ++   DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 523 RLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L++  R    WR Q       + IN+++ DL D  L + ++  +     
Sbjct: 583 SGVIHPLTRFVLDQALRCQAQWRKQGLQLG--MAINLSALDLSDPGLPDFVRGCLEHHAV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR  G+ L++DDFGT  S L+ L  +P D +K 
Sbjct: 641 PAQSVTLELTESALMRDVEFALHMLHQLRSAGVRLSIDDFGTGYSSLAQLKRMPVDELKI 700

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    +      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 701 DKSFVMQLADGTDDAFIVRSTIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYS 760

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 761 PPLEEAPLVAWCMRQLGMTTPA 782


>gi|320158485|ref|YP_004190863.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319933797|gb|ADV88660.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 630

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 200/444 (45%), Gaps = 7/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  +   +  +   D LT +PNR +  D L     +++ +D+ + T++   +  
Sbjct: 186 LTEIEQRTAAESHLDFHLHYDPLTKLPNRITLADDLAE--QMASLEDDEQITLIYFSLKN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N   G   GD +L SL++RI   L     LAR+ G+ F +                
Sbjct: 244 FKFVNASYGYMFGDQILSSLSQRICHKLPKKWKLARIVGSDFVLAAQHLRKPEIQEQVIE 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + K+   P N+ +  + +   +G A        S  +++ A  AM   K+ G      +
Sbjct: 304 RITKACTQPFNVNDMSVNLQCHLGVALAPMDATDSFSLIQRACSAMSEGKNEGLQVSYFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
           F       +R+ ++  L  A++N+EL + + PII      +I+G EAL++W++P  G +S
Sbjct: 364 FAAQKAAEERLQLESHLSEALKNNELEVHFQPIICLKQGGKIIGAEALLRWNNPTLGQVS 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  +    W   +      + INI+     +    + 
Sbjct: 424 PDRFIPLAESNGQIIEIGYFVLHQALKQAAEWHRASPH-AFKVAINISPIQFRERHFVQH 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q +I         I+L  +E +++ + E ++ +L +LR+ G+S++LDDFGT  S LSYL
Sbjct: 483 LQDIIDLYQLPAKCIELELTEGILLQDEEYAQNVLAQLRQFGVSISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      +    + R+II MA  +   +IA+ +        +    
Sbjct: 543 QKYAFDTLKIDRSFINQLEHNQHNRELTRAIIAMAHKLNMMVIAEGVEDRYQEDFIRTEE 602

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+Y Q       +  +   + L  
Sbjct: 603 CNYAQGFLYGKAVPADDFSQQLAS 626


>gi|107104398|ref|ZP_01368316.1| hypothetical protein PaerPA_01005474 [Pseudomonas aeruginosa PACS2]
 gi|313106719|ref|ZP_07792936.1| putative signal transduction protein [Pseudomonas aeruginosa 39016]
 gi|310879438|gb|EFQ38032.1| putative signal transduction protein [Pseudomonas aeruginosa 39016]
          Length = 551

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 211/437 (48%), Gaps = 9/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+      +   A QD LTGI NRQ F   L   L      D     +  +D+D ++ +N
Sbjct: 105 ERLGLQATLQLLAEQDPLTGIANRQGFQTLLAARLS---EFDGRGLVLGHLDLDNFRHVN 161

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +++ +  R+   ++  D LARL  + F ++L +  +  +    A  + + 
Sbjct: 162 DSLGHQGGDRLILQVVNRLRGFMENGDSLARLGSDEFALLLDTRRDPQRAERVAERIVEC 221

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +    + +  S+G A   +    +  ++ +A +AM  AK R G     F     
Sbjct: 222 LGEPYWIDGESLLLGCSLGLAHARAD-EGADPLMWHAHIAMQQAKSRQGCTFHVFDERIN 280

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R  R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + G ++ SEF+
Sbjct: 281 RGVRSLADLEAELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHGERGLLTPSEFV 340

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  +++ R  RD+  W +   + P+ + +N++ +   D++L   +Q LI
Sbjct: 341 PLAEESGLIVPLGYWVIARALRDM-QWLNGRGLEPLHMAVNLSFRQFQDSQLLPTLQRLI 399

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++   +E+ VM   ++    +  L ++G+  +LDDFGT  S   +L  +P 
Sbjct: 400 EEHGVDARWLEFELTETAVMRRSDQVLQTMQALGQLGVRFSLDDFGTGFSSFVHLNSLPI 459

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G  ++     ++R++I +A N+   ++A+ +      ++L   GCD +Q
Sbjct: 460 TLLKIDRSFVGGMDQRAENFQLVRAMINLAHNLNLEVVAEGVETLRQQEQLRDFGCDQVQ 519

Query: 937 DSHVASPLGFNSILKLL 953
              ++ PL    + + L
Sbjct: 520 GYWISPPLPLAELARFL 536


>gi|239994162|ref|ZP_04714686.1| GGDEF/EAL domain protein [Alteromonas macleodii ATCC 27126]
          Length = 651

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 125/439 (28%), Positives = 221/439 (50%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +   + +D LT + NR  FL  L  ++D +   DN    ++ ID+D +K++N
Sbjct: 220 EVERRTADLYRLSNRDPLTNLLNRNGFLKHLNNLIDTTRALDN-SLALLFIDLDGFKQVN 278

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD VL  +  R+       + L R  G+ F  ++    N       A AMR  
Sbjct: 279 DSLGHKVGDIVLAEIANRLRNY-TEENHLGRWGGDEFVAVIPY-ANVDTAKAVAHAMRSG 336

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
           + +PI   + ++T+ A+IG A +     ++ ++++ A+L MY  K   RG   V +  + 
Sbjct: 337 VTIPIIANDNQVTLDATIGIAMFPVHGDSAVDLIQQADLTMYDQKRKQRGSIGVFNETLH 396

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       + E L LA+ENSE  + Y PII +    +  +EAL++W+     NIS + F+
Sbjct: 397 NEIKREQRLCERLRLAIENSEFTVFYQPIIDVTTNSLSSVEALLRWN-CDGENISPAVFI 455

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   ++  I  ++L R   D+  W+     P + + IN++   LLD+   + +   +
Sbjct: 456 PLAERSGLMPEIGAWVLNRALIDLSHWQ---FKPGLAMSINVSVAQLLDDSFFKVLDNAL 512

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S T  SP R+ L  +ESV   + +     +  L    + +++DDFGT  S L+ L  +PF
Sbjct: 513 STTKISPERLYLEITESVFAIDKDLVTKRVSELVARDVKISIDDFGTGYSSLNRLQSMPF 572

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           + +K + S +  S+E+   I+R+ + MAK      IA+ I  E   + L+++G DY+Q  
Sbjct: 573 NFIKIDRSFIQNSSEESDTIIRATLLMAKEFGCKTIAEGIETEQQRQHLSQLGTDYLQGF 632

Query: 939 HVASPLGFNSILKLLKERF 957
           + A P+  N ++    E +
Sbjct: 633 YFARPMNANDLISWYNENY 651


>gi|78485424|ref|YP_391349.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363710|gb|ABB41675.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 767

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 210/436 (48%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ + ++     D LTG+PNR    + +   L    T       ++ +D+D +K IND
Sbjct: 327 ERETKQKLVHQLTHDRLTGLPNR----EYIDVELKDPLTTPQNHYDLLFLDLDNFKDIND 382

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  +GD VL+ +  R  ++L     L R  G+ F  I +       +  FA  +  ++
Sbjct: 383 NFGHEIGDQVLIEVANRFKQVLDEQGWLIRFGGDEFVFIKLPVKTE--LTVFAEQIMTTL 440

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           + P  + +    + ASIG AS+         +L  A+LAMY AK H+      S  +   
Sbjct: 441 SDPFIIEDMRFNIGASIGIASYPGDSEDLQTLLSYADLAMYEAKKHKNTFTHFSNHLRED 500

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +V+++  L  A++++E+ +VY P + +  E I G+EAL++W +   G +  S F+ I
Sbjct: 501 ALQKVLVEHLLKQAIQDNEISIVYQPQLNVKQEMI-GVEALVRWQNDTLGEVPPSTFIPI 559

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE+  +  +   + +    ++   + + +     + +NI+ +  +     E +  +I +
Sbjct: 560 AEEMGFMPELGRHIADLTLSEMGQLQRKLHQ-SFEVSMNISVRQFMSIGFYEDITRMIDE 618

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P  I L  +ES+ M   E    +L +L+  GI  ++DDFGT  S LS L  +P + 
Sbjct: 619 SALKPELIMLEVTESIFMEELEFVIDILEKLKSHGIMFSMDDFGTGFSSLSLLRTLPINE 678

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      EK   ++ +II +A+ ++   +A+ I  E   K L + GCD  Q  
Sbjct: 679 LKIDKSFIDDVLQQEKNYGLVENIIEIAQKLKMQTVAEGIENEAQAKLLEKFGCDIFQGY 738

Query: 939 HVASPLGFNSILKLLK 954
           + + PL +  +   L+
Sbjct: 739 YFSKPLSYAQLETYLQ 754


>gi|146280893|ref|YP_001171046.1| GGDEF domain-containing protein [Pseudomonas stutzeri A1501]
 gi|145569098|gb|ABP78204.1| GGDEF domain protein [Pseudomonas stutzeri A1501]
          Length = 545

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 216/442 (48%), Gaps = 9/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+      +   A +D  TGI NRQ F  +L   L      D     +  +D+D ++ 
Sbjct: 101 VRERCNLQGTLQKLAVRDPHTGIANRQGFQAQLLDALS---EHDGHGLELGYLDLDNFRH 157

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D+LARL G+ F ++L + +++ +    A  + 
Sbjct: 158 VNDALGHDAGDRLILQVVARLKAQLEVGDLLARLGGDEFALLLDTRDDAGRADAIADRIV 217

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
           +++A P  +    + +  S+G A  ++   ++  +L +A+LAM  AK   G     +   
Sbjct: 218 EALAEPYWVDGESLMLGCSLGLARASA-GTSADALLWHAQLAMRQAKASQGCTWCLYDEH 276

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           VS         + +L  A+   EL L Y P + L    +VG+EAL++W HP+ G +    
Sbjct: 277 VSRSARSLADQEGELRRALRRGELELHYQPRLCLDTGRVVGIEALVRWLHPERGLLGPDA 336

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  +++ R  RD+ S  +Q     + + +N++ +   D++L   +  
Sbjct: 337 FIPMAEESGLIVPLGYWVIARALRDLQSLHEQGAD-SLHMAVNLSFRQFQDSQLLPTLTR 395

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +    P  ++   +E+ VM   E+ +  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 396 LIDERAIDPHWLEFELTETAVMRRSEQVQTAMQALGQLGVRFSLDDFGTGFSSFVHLSNL 455

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +   G+  ++  ++ +++ +A N+   ++A+ +     ++ L + G   
Sbjct: 456 PITLLKIDKSFVASMGARPEKRQLVEAMVGLAHNLRLEVVAEGVETAEQLELLRQFGAQQ 515

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q   V+ PL    +L  +   
Sbjct: 516 VQGYLVSQPLPLAELLSFMSAE 537


>gi|171317826|ref|ZP_02907005.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MEX-5]
 gi|171096991|gb|EDT41859.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           MEX-5]
          Length = 651

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 243/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 104 DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTATLEGLLARAARSGQVEKAT 161

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 162 ICIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSAWRALEARLTYEMHHDPMTGL 218

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A +      ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 219 DNLSALVPALMRA-QQAADESGTCAALLLLDLDDYQRINRALGYDAGDTLLRDTAQRLQA 277

Query: 602 LLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 278 LVAPDEQLARVASDKFAVVLTASNRSRASDAADALARRLQAAVREPYVFQGQTVHLSASI 337

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN             ++R+ ++ D
Sbjct: 338 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHEPVDDPADAERLKLEAD 397

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     + G+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 398 LYDGVRNGEFSLHFQPITRSQSGAVDGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 457

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 458 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 516

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P ++++LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 517 EITESLLMHDPAQAKVLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 576

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 577 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 636

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 637 LARRFEAQQ 645


>gi|117918893|ref|YP_868085.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
 gi|117611225|gb|ABK46679.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. ANA-3]
          Length = 856

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/565 (20%), Positives = 219/565 (38%), Gaps = 19/565 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER    +    + V   DI    +   P   ++L +AS    G  
Sbjct: 290 ASRVNSLLARIYQQKERGKTTLESIAEAVILTDIDAKVIYMNPKAESLLDVASCYAVGQS 349

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L  +        + +              + ++  A      +   I  + N + +I
Sbjct: 350 ---LASLLKAGEQLNQAVFHCMRLGETTPQVAKIKLLTA--TPRVIERSISNVLNHDKEI 404

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  DIT+++     +   A  D +TG+ NRQ+F ++L      +         V 
Sbjct: 405 TGTVVVLRDITQEELLKRQLQKRANFDGITGLLNRQAFEEQLPQFASQAKR-----IAVC 459

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +LV + R I   L    +LARL G+ FG+++        
Sbjct: 460 YLDLEQFKLINDSCGHTAGDRMLVLVARAIQSCLGPQTLLARLGGDEFGLVICDSTALSV 519

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     ++       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 520 AQQLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINALELLKDADIACIAAKAKGT 579

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI       +   +E L++ 
Sbjct: 580 NQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEILLRI 639

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +             I IN++   
Sbjct: 640 QEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNPQLWPDH--CISINLSGNS 697

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             +    +E+  + N +R   +L +LRK+G S  LDDFG
Sbjct: 698 LGAEGMVEYIAQQQHIFDIPSQCVCFEITETTAIQNRQRGMEMLRQLRKLGFSFALDDFG 757

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 758 SGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQE 817

Query: 923 DIKELTRMGCDYIQDSHVASPLGFN 947
            I  L  +G +Y Q   +  P    
Sbjct: 818 IIDRLQVIGINYAQGYAIGRPQPLA 842


>gi|254483022|ref|ZP_05096257.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036707|gb|EEB77379.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 787

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 229/452 (50%), Gaps = 19/452 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E  ++       A  DNLT +PNR+   ++L  +L L+  + +    ++ ID+D +K+
Sbjct: 323 VEEANEAKNRAHHLANYDNLTSLPNRRLLTEQLDLLLKLNQRNGHT-LALLFIDLDDFKR 381

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDIL------------ARLSGNRFGIILISENN 626
           +ND LGI  GD +LV + RR+   ++  D +            ARL G+ F +IL   + 
Sbjct: 382 VNDSLGIGAGDQLLVEVARRLSHAVRDSDSVGRYASSNTEIDVARLGGDEFTVILNQLDT 441

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +      A  + + +  P+ +  R++ +  S+G A   +       +LK A +A +HAK 
Sbjct: 442 AGSAQLVAQRLVQKLTAPLAIEGRDLVLHPSLGIAIAPNDGKDVESLLKAASIAKFHAKQ 501

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             G  +  ++ +  +   DR+ ++ DL  AV+++ L L Y P I      ++G EAL++W
Sbjct: 502 TDGARIGIYQSNMAQEGEDRLRLESDLRKAVKSNALSLHYQPQIDTHSGSVLGAEALLRW 561

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP+ G+I   +F+ +AE++ ++  +  ++L +  + + S+ D+       + IN++++ 
Sbjct: 562 EHPELGSIPPEKFITLAEDIGLMGQLGDWVLVQACQQLRSFEDEGIKLA-KVAINVSAEQ 620

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                  + +  +I +T   P +++L  +E+V+  N   +   L  L+  G+ L++DDFG
Sbjct: 621 FT-PTFIQRVGVVIDETGIDPRQLELGLTEAVMSSNDPETIASLALLKASGVYLSVDDFG 679

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S ++YL   P D +K + S +  +  ++    ++ +II MAK++E  ++A  +  E 
Sbjct: 680 TGYSPINYLAQYPLDEIKIDRSFLIDAEKSDNGANLVIAIIAMAKSMELRVLASGVETES 739

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               LTR G   IQ    + P+    +  +L 
Sbjct: 740 QFHFLTRNGASLIQGYLFSKPVPAEELKPMLA 771


>gi|58581174|ref|YP_200190.1| hypothetical protein XOO1551 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425768|gb|AAW74805.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 840

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 214/569 (37%), Gaps = 15/569 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           VLA       + S   R   A   +   +  +D+  + +     +A IL      +    
Sbjct: 271 VLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEEL--QA 328

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +H  D           + + +     E R   AD    W       +     + 
Sbjct: 329 CTLAEVMHPEDIKLDS---RGMLDWPKLLQSGEKRFVRADGGVMWGRWSASLVEPGPEEP 385

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D++      + +  +A  D LTG+ NR     RL  +++L      +   + 
Sbjct: 386 TLVLAVIEDVSHAHDLADQVAFHACHDALTGLINRHEIERRLQLLIEL-PRSPQMCHALC 444

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K +ND  G AVGD  L      I   L+  D L RL G+ F I+L +  +  +
Sbjct: 445 FVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLPQ 503

Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  M   +  P +    R +T + S G      S    + ++  A+LA + AK  G
Sbjct: 504 ARALLEGMHAVLGQPWSHQGGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEG 563

Query: 689 GNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            N +  F  +     +          + LA+    L L    I  L D   +  E L++ 
Sbjct: 564 RNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLYAQKIQVLSDPGRLQYEVLVRM 623

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S  EF+   E   + + ++ ++LE +   + +      +  +   +N++++ 
Sbjct: 624 RASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDL-CHVNLSAQS 682

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +  + + AL  +      ++ +  +E+ V+G+ E ++  +  +R  G  + LDDFG
Sbjct: 683 IAQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFG 742

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL     D +K +   +          A + SI  +   +   ++A+ +  E 
Sbjct: 743 SGMASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEA 802

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
           DI  L   G   +Q   +  P     +L 
Sbjct: 803 DIPGLRDAGVGQVQGFSLHRPCPLEELLH 831


>gi|160873825|ref|YP_001553141.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160859347|gb|ABX47881.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS195]
 gi|315266050|gb|ADT92903.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS678]
          Length = 646

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 196/420 (46%), Gaps = 6/420 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR + ++ L+T+L+     +    +V+ + +  +K IND  G  +GD +L  
Sbjct: 222 YDPLTGLPNRINLINSLSTMLEEVNRKEK--ISVLYLGLRNFKSINDSYGYLIGDKILTI 279

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++R+         +AR++G  F II   + ++ +       +      P  + +  IT+
Sbjct: 280 LSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITI 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCL 713
            +S+G A      I ++ +L+ A  AM  +K  G  H    + +    +    ++  L  
Sbjct: 340 PSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVD 399

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +EL L Y P I L  ++++G EAL++W +P  GN++   F+ +AE    I  I  F
Sbjct: 400 ALNKNELSLHYQPFINLRTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNF 459

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         W  +       I INI+   + +    E +  L++     P+ ++L  +
Sbjct: 460 VLHTALAQAAKWCREL-DQEFKIAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEIT 518

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E ++M +   +   + +L+++GI ++LDDFGT  S LSYL    FDT+K +   +     
Sbjct: 519 EGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEE 578

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E+   + ++II + K +   +IA+ +        +    CD  Q      P+      +
Sbjct: 579 NEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITATQFEQ 638


>gi|152990433|ref|YP_001356155.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422294|dbj|BAF69798.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 458

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 106/472 (22%), Positives = 219/472 (46%), Gaps = 22/472 (4%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             ++   I P++  NG+ L+ + +  DIT +KK           D LT + N   F+ ++
Sbjct: 1   MIYIDFEIIPITLPNGE-LKLVSLGRDITYEKKLFYENEQLKDFDPLTELYNYNGFVRQV 59

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL-A 610
              L     + +     ++ID+  +  IN    + VGD +L  + +++ +     +++  
Sbjct: 60  EAFL---HENPDTTCAFLLIDLVNFSYINKSYSVEVGDQILKEIGKKLKKQFGKNEVVIG 116

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAM--PINLLEREITVTASIGFASWTSSKI 668
           R+ G+ FGI   + +    +      ++         ++    +++    G A + +  I
Sbjct: 117 RIGGDEFGICFKNIDTQEHLYSVVEKIKSIFDKKIQFSISGYSLSIFIHGGVAIYPNDGI 176

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHP 726
           T  ++L+NA +A+  AK    N ++ +     +   + +  +  L  A++ +     Y P
Sbjct: 177 TVQKLLENASVALKSAKKENENVIKFYNNLIENKVKNYINAENLLNRAIQKNLFIFHYQP 236

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            +  + +EI+G EAL++           +EF+ + E    + +   + ++ + + I  W 
Sbjct: 237 YVDAITQEIIGFEALVRIKEEDGTIHYPNEFIDLLENSHFLDSFRHWAVDEVIQKIKKWE 296

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                    + INI+++   + EL E +   +S T   P+ + +  +E + M +P+RS+ 
Sbjct: 297 K-------PVSINISARSFKNRELTEEV---LSHTKGLPAPLTIEITERLYMKDPQRSKE 346

Query: 847 LLGRLRK-IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
           ++ RL++   I +++DDFGT  S LSYL  +  D +K + S +       K  AI+ +II
Sbjct: 347 MIERLKECKNIQISIDDFGTGYSSLSYLKDMHADILKIDISFVRAMLEDTKSQAIVSAII 406

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A+ +    +A+ +  +   + L +MG DYIQ  +   PL    I KLLK+
Sbjct: 407 TLAQALGMKTVAEGVETKEQYEMLKKMGVDYIQGYYFFKPLPEEEIEKLLKK 458


>gi|332991612|gb|AEF01667.1| PAS sensor diguanylate cyclase and phosphodiesterase [Alteromonas
           sp. SN2]
          Length = 990

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/607 (19%), Positives = 227/607 (37%), Gaps = 43/607 (7%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGS-GDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             + V       + + +  ER    V G     V+        +  +  I TILG     
Sbjct: 386 TARDVTERFKAQRALKNSEERYRRLVDGMHRHFVYTKTAEHKFIYVSAGIETILGFTPDY 445

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                   +  I  +  + F   + S  G +       +   + + +   +     P+ N
Sbjct: 446 FIEKESRLVRKI-PD--ETFNIRMKSGQGVKPDPYLVHY--TSCEGKELVLEFSDTPILN 500

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-- 562
            +G ++   GIA D+T+++   E +   A  D LTG+ NR +F  +L  IL+ ++ D   
Sbjct: 501 ESGALIAVEGIAKDVTKEQALQEEVAYQANHDQLTGLLNRYAFDKQLRDILEANSADTPD 560

Query: 563 ----------------------NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
                                      +  ID+D++K +ND  G   GD +L  ++    
Sbjct: 561 KNTDVKRDNVTTIYPSLISANTTNPGVMCFIDMDRFKLVNDSCGHPAGDKLLQEVSTIFR 620

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           + +   D+LAR+ G+ F II   +            ++          ++   V ASIG 
Sbjct: 621 QHISDKDLLARIGGDEFCIIYHEQPLDKVKIKLDKLLKAISTYRFMYEDKLFFVGASIGV 680

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVE 716
                 +  ++E++K A+ A Y AKH G N    +     + +    + D    L  A++
Sbjct: 681 IEINPQEHNAAELIKAADNACYKAKHLGRNRYFVYHAHDAQLNMDNSENDVLHTLHKALQ 740

Query: 717 NSELYLVYHPIIR------LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
                L    I+            +   E LI+        IS   F+ +AE   ++  +
Sbjct: 741 FDGFELYSQAIMPLNGITEDDTNGLEHYEILIRLTGSDGTLISPGLFIPLAERHGLMNKV 800

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++++   + + +     +     + IN++   L D      +   +  T     +I  
Sbjct: 801 DYWVVDNTLKTLEANPLHVDNVA-KVAINLSGITLGDEITLLKITQRLQGTTVPLEKICF 859

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + N   ++  +  LR+IG S  LDDFG   S  +YL  +  D VK +GS +  
Sbjct: 860 EITETTAVTNLSAAKHFISTLREIGCSFALDDFGAGMSSFTYLKNLDVDYVKIDGSFVRN 919

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                   A + +I  +A ++    +A+ +        L  +  DY Q   +  P     
Sbjct: 920 IVHDPIDHATVTAINNIAHSMGKQTVAEFVVDTATANVLKALQVDYGQGFALDKPKPLAH 979

Query: 949 ILKLLKE 955
            ++ L +
Sbjct: 980 RVQWLTK 986


>gi|237749006|ref|ZP_04579486.1| GGDEF domain signaling protein [Oxalobacter formigenes OXCC13]
 gi|229380368|gb|EEO30459.1| GGDEF domain signaling protein [Oxalobacter formigenes OXCC13]
          Length = 680

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 120/547 (21%), Positives = 229/547 (41%), Gaps = 30/547 (5%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             +GD  +  DI +D  + + ++A   G     + G +  W+  I   D++ +    +  
Sbjct: 20  ESTGDYYFIGDIEQDIFSVSQNMADDFGFPDKQITGLLPTWMKLIQPEDQERYYKAANDL 79

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGIL 530
           V  R+ RL  E++VR  + +  W+   IR   N+  G   R +GIA  +    K      
Sbjct: 80  VSGRKDRLNEEYQVRLKNGELIWIHEVIRVKKNAGTGRPERVVGIARKVENGGKV----- 134

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D +TG+   + ++DR+  +      DD+    +M++ ID +  IN +   + GD 
Sbjct: 135 -----DLVTGLYTHEKYMDRMQKL------DDSHPIGIMLLGIDDFTMINTLNNHSFGDL 183

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL ++ + I  +L    ++ R  G++F I+        K+  F   ++            
Sbjct: 184 VLRNVAQDIRNMLPESALICRFDGDQFIIVYPDAT-REKLERFYENVQSYTGKVYISHGV 242

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS------FRSDR 704
               T S G   +   +    ++LK A +A+  AK  G +    +           +   
Sbjct: 243 HYQFTISAGAVLYPDQRGQGDDLLKCAAVALRKAKLNGKDKCVFYSAGMLSLQLDEQRKI 302

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            ++ E +    E     +V+ P+       + G EAL+++++   G +S  EF+ + E  
Sbjct: 303 QILGESIRSGFE--GFSVVFQPVNDASTLRVCGAEALLRFENEACGALSPVEFIPLLESS 360

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  ++LE+       W     +P   + +N++   L D   C  ++AL+ +    
Sbjct: 361 NQIIPVGRWVLEQAIIACKKW--TVYIPDFVMQVNVSYLQLRDKNFCSRVEALLKEHRLL 418

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  I L  +ES  + + ER    L RL+++ I L +DDFGT  S L  L     D VK +
Sbjct: 419 PKHIVLELTESYFITDSERINDTLKRLKQLKIRLAMDDFGTGYSSLGRLTDFDVDIVKID 478

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +  S   R     + S+I +  N+   +  + +    ++  + R+  D IQ  +V+ 
Sbjct: 479 RLFVKTSNSDRYNRDFIESVIRLCHNVGMKVCIEGVETGAELNMVNRLYADTIQGFYVSK 538

Query: 943 PLGFNSI 949
           P+     
Sbjct: 539 PVPEKQF 545


>gi|167574125|ref|ZP_02366999.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia oklahomensis C6786]
          Length = 807

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 242/585 (41%), Gaps = 14/585 (2%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
               + ++ L      +  L        +         A+    + V    + ++     
Sbjct: 220 FAASLFLMYLALVWARKAALQRLSIQYALDRSEAFAEAALSSVAEAVITVGLAKNVDFIN 279

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADN 490
                +LG ++ +  G   + +  +   +      I+D F     R  ++ E  +   D+
Sbjct: 280 NAAEQLLGYSAAACVGAPVSSVLMLLDKETGLAVDIVDEFWARDVRTPIKREVHLLRRDH 339

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +   I  M +     + Y+ I  ++T +++ LE +   A  D LTG+ NR  F  R
Sbjct: 340 SKIVVQTTISEMGDRVHGHIGYVLILRNMTREQQFLESLAWQATHDVLTGLVNRVEFERR 399

Query: 551 LTTILDLSATD-DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           L   L  + +  D     ++++D+D++K+IND  G A GD +L  +T+R    L   D+L
Sbjct: 400 LEIALADATSGKDRADSMLLMLDLDRFKEINDTCGHAAGDAMLREVTQRFQNCLDDEDVL 459

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKI 668
           ARL G+ FG++L     S    + A  +R+S+            TV+ SIG      +  
Sbjct: 460 ARLGGDEFGVLLPHGAGSWPSKNKAERLRRSLEDFVFLWEGERFTVSVSIGVLELCKAPR 519

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                +K A++A Y AK RG N ++    S    +     V     +  A+E     L  
Sbjct: 520 NLEMAVKLADIACYIAKERGRNRIQLADPSDLQQARHVGDVQWSRRIKTALETDGFRLFV 579

Query: 725 HPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            PI+            E L++       +IS + F+  AE   ++  I+ +++  + R +
Sbjct: 580 QPIVHTRPDSRIPERAEVLLRMTDGAGRDISPAAFLPAAERYGLMGLIDRWVIRTVFRKL 639

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            + R +         +N++   + D    E + A +  +   PS I    +E++ + N E
Sbjct: 640 SALRTREYHE---YNVNLSGASISDERFVEFVIAELLSSGLEPSVICFEITETIAVKNLE 696

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILR 900
            +   +  LR IG    LDDFG   S   YL  +P D +K +G  ++     R++  ++ 
Sbjct: 697 LASRFMSELRTIGCRFALDDFGAGMSSFRYLRNLPIDYLKIDGEFVSNMMSDRVSYGVVS 756

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +I  +A ++    +A+ +  ++++  L  +G D+ Q    A P  
Sbjct: 757 AINEVAHSMRCNTVAEHVESDVELGMLRELGIDFCQGYFFAKPSP 801


>gi|126739551|ref|ZP_01755243.1| hypothetical protein RSK20926_04827 [Roseobacter sp. SK209-2-6]
 gi|126719197|gb|EBA15907.1| hypothetical protein RSK20926_04827 [Roseobacter sp. SK209-2-6]
          Length = 644

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 196/431 (45%), Gaps = 17/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A  D LTG+ NR+SF+++    +      +     V  ID+D++K IND  
Sbjct: 210 RSRKKAEYLAKYDPLTGLLNRRSFVEQAEQCI-----QEKSLVAVCYIDLDRFKAINDTF 264

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD  L  + + + E     D+L+R  G+ F I          I      + K  A 
Sbjct: 265 GHAIGDAFLTHVAQILKENSNSGDLLSRFGGDEFVIGFCEVPLDEAIQTVRN-ILKECAR 323

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L    +  + SIG  +   +  +   +L NA+ A+Y AK+ G N    +        
Sbjct: 324 KVELGAISLEASVSIGVVAVEEAG-SLEVILNNADAALYFAKNAGRNDFAIYGEEMGDEL 382

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    ++  L  A  N E  + Y P++R  D+ ++G EAL++        IS S+F+ +A
Sbjct: 383 RRRHGLETRLREATLNKEFDVHYQPLVRSADQAVIGYEALLRLKDHDGNQISPSDFIPMA 442

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I+ I  + L+     + S  +        + IN++       +L   +Q  +  T
Sbjct: 443 EETGLIEEIGRWTLQTAIGQMASLEEGK-----KLAINLSPTQYRSGDLVGFVQKALMDT 497

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P+ ++L  +E++++ +     + L  L+++G+S+ +DDFGT  S LSYL    FD +
Sbjct: 498 GFPPNLLELEVTETLLLEDSMMIEMQLDTLKEMGVSIAMDDFGTGFSSLSYLWKHRFDRL 557

Query: 882 KFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K + S +       E+   I+ +I+ +   ++  I A+ +      + LT +GCD +Q  
Sbjct: 558 KIDRSFVAALERNPERSREIIETIVLLGAKLDMEITAEGVETAAQAQLLTDLGCDVLQGY 617

Query: 939 HVASPLGFNSI 949
                     I
Sbjct: 618 LFGRAASLEEI 628


>gi|19310364|gb|AAL17672.1| hypothetical protein [Methylobacterium extorquens]
          Length = 570

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 220/486 (45%), Gaps = 27/486 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                  +   +W  D      V          G +  +                     
Sbjct: 109 FRFLFESNPLPMWLVDQDSARFVAVNEAAVAHYGYSREAF---------------LARGL 153

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   V +   R     R R AD     + +  R ++   G     +G A D+TEQ+++
Sbjct: 154 QDLSEAVAFSFARDGRLHRHRRADGSLIDVTLFERSLAFE-GRPA-VLGAAIDVTEQRRA 211

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   A  D LTG+PNR  F  RL  ++   A        ++ +D+DK+K +ND LG 
Sbjct: 212 EARITHMAHHDALTGLPNRALFTTRLAEVIAEHART-GAGAALLCLDLDKFKLVNDTLGH 270

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L ++  RI   L   D++ARL G+ F ++L     +  ++  A  + ++++ P+
Sbjct: 271 PAGDTLLRAVADRITACLHGEDLVARLGGDEFAVLLR-TPYAGTVSAVAGRIIEALSHPV 329

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +RE  +  S+G A        S  +L++A+LA+Y AK  GG     F  +    DR 
Sbjct: 330 RLGDRECQIGVSVGIACLPEHGTDSDTLLRHADLALYRAKADGGCIAHYFEAAMDSWDRS 389

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               + DL  A    +L L Y P++ +    IVG EAL++W HP  G I  SEF+ +AEE
Sbjct: 390 RRRREADLHEAFARGDLALAYQPVVGVRSRAIVGFEALLRWHHPVEGAIPPSEFVPLAEE 449

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++L +   +   W D     P+ I +N++     D  L   ++  ++ +  
Sbjct: 450 TGLIVPIGAWVLRQACAEASLWAD-----PVRIAVNLSPVQFRDPGLVATVREALALSGL 504

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P R++L  +ESV++   E +   L  LR +G+ + +DDFGT    LSYL   PFD +K 
Sbjct: 505 APHRLELEVTESVLLAASEANVATLHALRDLGVRIAMDDFGTGYCSLSYLQKFPFDKIKI 564

Query: 884 NGSLMT 889
           + S ++
Sbjct: 565 DRSFVS 570


>gi|330877426|gb|EGH11575.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 769

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 208/430 (48%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DN+TG+PNR   ++RL + +            ++ + I+  K I++      
Sbjct: 337 QLAHNALHDNMTGLPNRALVMERLGSSIAADR-----PVALLYMGIENLKTISESSSAEG 391

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L  + +R+    +  D +ARLS N F ++L +  +       A A+ + ++ P  +
Sbjct: 392 VDQLLRQVGQRLQGNSRPGDTVARLSANEFLLLLDNTTS-DGAVGIADALLRLLSEPQRI 450

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              +  +   IG   +     +++ ++  A +A    A   G   +           ++ 
Sbjct: 451 DNHDYALECCIGITVYPEHGDSATGLVNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIC 510

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 511 LIRDLRKAPQNGELMLHYQPKLDIRQSYVRQAEALLRWTHPRFGNVSPAEFIVLAERTGS 570

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 571 INLLTNWVIEEAMRQLAEWRQRGLV--LQVSVNISADDLLGDDLAGYVMKLLKQYGVPAE 628

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 629 QLVFEITESAVMSEPEKALIVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 688

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 689 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 748

Query: 945 GFNSILKLLK 954
              +    + 
Sbjct: 749 TAAAFEAWIT 758


>gi|209548997|ref|YP_002280914.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534753|gb|ACI54688.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 924

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 146/683 (21%), Positives = 272/683 (39%), Gaps = 64/683 (9%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
              A L  +       T  +  + +A  ++       +     Y   +     W+ + + 
Sbjct: 291 LLFAALLIVGVIRSRSTGLVTMMAVALTIVAVGEIGAFLLQWRYAILIGTAVPWLTLLLA 350

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                              AL   + L  +L+     +         + I          
Sbjct: 351 ----------------WMLALNERVDLGRMLVAIANTEARNTRRLMRRIIAD-------- 386

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILD 469
              S D V  +D     V  +     +LG   G S+ G        I   D         
Sbjct: 387 ---SSDGVVAFDSDLRIVEASESAKAVLGAEIGASLLGSTDT--AII---DLVRRLVSEH 438

Query: 470 SFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIG------IANDITEQ 522
                R      +F   + +    +   + I P+   +              I  DIT +
Sbjct: 439 DAEPGRVHTALVDFAGNKGSQATHYEASVTISPIEQPHARPAAARSRFAGCLIIRDITAR 498

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
               E +   +  D LTG+ NR+ F  RL T+   +         V V+DI+++  +   
Sbjct: 499 YDYEERLKTMSELDELTGLLNRREFASRLATLESRA--------FVSVLDIERFSSLCAT 550

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD++L S+  R+G      ++LARL  + FG I+ S  ++  I DFA  +     
Sbjct: 551 LGRDVGDELLKSVAARLGNAFA-GNLLARLDRDHFG-IVTSAADAHAIEDFANGLLALFE 608

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSF 700
            P+ L    + ++  +G AS   +   +  +L  AE A+  AK    G         +  
Sbjct: 609 EPVLLSGAAVPISVRVGIASSEDAAPGA--LLNAAESALDAAKALAGGRWSSFDPSAAVR 666

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           ++    ++ D+  A+ N + +L + P I      ++G EALI+W+HP++G IS +EF+ I
Sbjct: 667 QARSRRLERDMRDALRNRQFFLRFQPQIEFASGRLLGAEALIRWNHPEFGLISPAEFIPI 726

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I  + L    R+  +W  +       + +N+++     +++   +   +S 
Sbjct: 727 AESSGLICEIGRWTLFEACREAAAWPGELG-----VAVNVSALQFEQSDIEADVSEALSG 781

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +    SR+ L  +ES  +GN       +  LR+ G+ + LDDFGT  S +SYL  +P D 
Sbjct: 782 SGLPSSRLCLELTESAFLGNGGAVIAKMCALRETGVVIALDDFGTGYSSMSYLADLPLDK 841

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +    + I+R+II +A  ++  ++A+ +  E++   L R+GC+  Q  
Sbjct: 842 LKIDQSFVRRMNANPNVLEIVRAIISLANGLKLQVVAEGVETELEADALQRLGCETGQGY 901

Query: 939 HVASPLGFNSILKLLKERFPLVK 961
               P   +  +++L +     +
Sbjct: 902 LFGRP---DEAIRMLSKWNAQKR 921


>gi|323136519|ref|ZP_08071601.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
 gi|322398593|gb|EFY01113.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
          Length = 683

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 194/425 (45%), Gaps = 9/425 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LT +PNR +F + LT      A   N R  +M  D+D +K +ND +G   GD VL+
Sbjct: 245 LRDELTKLPNRVAFREELTRAFARHAR-VNERFALMCFDLDGFKSVNDSMGHETGDAVLI 303

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              RR+    +  D++ARL G+ F +I +   +       A  +  +   P  +  R  +
Sbjct: 304 EAARRVRVSTRESDLIARLGGDEFALIAVDIRSVEDAVSIAERILNAFRAPFEVGGRSFS 363

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLC 712
           ++ SIG A   S  +    +L+NA+ AMY  K  G      FR           +  +L 
Sbjct: 364 ISVSIGVAIAPSDGVDPESLLRNADNAMYATKQAGRCGYTLFRDRFGFVAERNTLDAELD 423

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A    EL++V+ P +     E  G EAL++W HP  G +S+ E + + E    I  +  
Sbjct: 424 RAFAKKELFMVFQPFVDTETLETTGFEALLRWRHPARGVLSAGEIIPLFERAGQIDMVGA 483

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + LE       +W D      + + +NI++  L      + + + ++++   P R++L  
Sbjct: 484 WALEESMAIAATWPDH-----LRVAVNISALQLRKPNFEQTVLSALARSGLDPRRLELEL 538

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+ ++ + ER+  +L  LR++GI   LDD GT  S L+ L  +P D VK + S +    
Sbjct: 539 TETAMILDGERAFEMLASLRRLGIRTALDDLGTGYSSLANLVGLPLDRVKIDRSFVANLE 598

Query: 893 EKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 ++ +  + + +++   + A+ +     ++ L   GC   Q    + P   + I 
Sbjct: 599 TNPMCASVTKLSVELGRSLSLAVTAEGVEDRRQLEMLRAFGCREAQGYLFSQPRPASQIA 658

Query: 951 KLLKE 955
            L + 
Sbjct: 659 HLFES 663


>gi|209521351|ref|ZP_03270065.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
 gi|209498210|gb|EDZ98351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. H160]
          Length = 604

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/559 (22%), Positives = 252/559 (45%), Gaps = 23/559 (4%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D++   D     +  +      +G     +     +    +   D      +L    
Sbjct: 47  GAVDLLAHVDDALRFIYVSDASLRFIGYHREYLKTATLH--DLVAPADVPRLDALLRQAA 104

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +    +  +    + + + +R + +S+  +  Y     D++  + + E  L  
Sbjct: 105 ASGNVE-KATLGLVKS--LTYPITVELRVVRSSHDGVDGYAIAGFDVSSWRATEER-LTQ 160

Query: 533 AFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           A   D LT +PN+   L  L      +A        ++++D+D Y+++N  LG   GD++
Sbjct: 161 ALHLDRLTSLPNQAGLLHALLDA-QQAADAHGTPVALLLLDLDDYQRVNRALGYDAGDEM 219

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK----SIAMPINL 647
           L   +RR+  +    + +AR++ + F I++    +    A  A A+ +    +I  P   
Sbjct: 220 LRDTSRRLLNMTSPNETIARVASDEFAILVKPAASRTDAAAAAEALARRLLTAIQQPYVF 279

Query: 648 LEREITVTASIGFASWTS--SKITSS----EMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             +++ ++ASIG A +        ++     +L+ A+ A+  AK  GGN +  +    + 
Sbjct: 280 KGQQVHLSASIGIALYPDVRHANDTAGEDTHLLRWADHALLQAKAAGGNTLAFYVPDDNP 339

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++R+ ++ DL   V N E  L + PI       +VG+EALI+W HP  G +  S F+ 
Sbjct: 340 ADAERLKLEADLYDGVRNGEFSLHFQPITSSRTRGVVGVEALIRWAHPLHGLVPPSMFIP 399

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE + +I  +  ++L+     +I W D   +P  ++ +N++ +   D    + ++  I 
Sbjct: 400 LAESIGLINFLGNWVLKVACMQLIQW-DAKGIPLQYVAVNVSPQQFRDPRFKDSVREAIE 458

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   P R+    +ES++M +P  ++ LL  L  +GI   +DDFGT  S L+YL   P  
Sbjct: 459 LTGIDPRRVVFEITESLLMHDPAHAKGLLEDLTGMGIRFAVDDFGTGYSSLAYLQRFPLA 518

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ 
Sbjct: 519 KLKIDRSFVENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEDQRTLLTEMGCDHIQG 578

Query: 938 SHVASPLGFNSILKLLKER 956
             V   L    + +  + R
Sbjct: 579 WLVCKALPSEELAQRFESR 597


>gi|269964549|ref|ZP_06178788.1| sensory box/GGDEF family protein, putative [Vibrio alginolyticus
           40B]
 gi|269830676|gb|EEZ84896.1| sensory box/GGDEF family protein, putative [Vibrio alginolyticus
           40B]
          Length = 539

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 116/547 (21%), Positives = 218/547 (39%), Gaps = 17/547 (3%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYR 475
           ++   D              +LG     M G       +   +D+  F R +L       
Sbjct: 1   MMVTLDSNNRIQEVNRFAQLLLGYKPMDMLGHRLREFYF---DDKVLFPRQVLLQPNQQV 57

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G  + E   R A+    W+   IRP+S S     + + +  DITE K   E +   A  
Sbjct: 58  HGVWRREVEYRHANGHRVWVRENIRPLSESE----QLLIVGEDITETKLLSEKLEYQARY 113

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  NR  F   L T L    +   +   ++ +D+D+ K +ND +G   GD  +   
Sbjct: 114 DLLTGTYNRNHFELELKTALCEVDSHRRVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFC 172

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +  +L +  ILAR+ G+ F ++L   +    I    + +           +  + ++
Sbjct: 173 ASMLEGVLPYNSILARMGGDEFAVLLKDCDEYGAINIAKLIISTLSEHLFIWEDTRLFIS 232

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDL 711
            SIG      +  T   +   A+ A + AK +G N    F + +    R  ++      +
Sbjct: 233 CSIGIRIIDHTADTPQMVHAQADSACHAAKEQGRNRYNLFSLDNEELQRRQMEMQSVNLV 292

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGL-EALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+ N  L L   PI  L   E     E L++  +     +S + F+  +E   +   I
Sbjct: 293 HEALSNQRLELFAQPIKSLQKHETQMYFEILVRIRNGYGDYVSPALFIPASERYNIAHWI 352

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  ++ +         +          IN++ + + + E  + +   +  +     +I L
Sbjct: 353 DKQVITQTLEWFEQRPEVVEQLG-RCSINLSGQSMGNQEFIDFLLERLESSTLPCEKICL 411

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  M N +++  L  +L+ +G  + LDDFG+  S   YL  +P D VK +G  +  
Sbjct: 412 EITETAAMSNLDQAIELFTKLKSLGCMIALDDFGSGLSSFGYLKKLPVDIVKIDGLFVQD 471

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    ++RSI  +AK +    +A+ +  +  ++ L  +G DY Q   +  P   + 
Sbjct: 472 INVNEMDRVMVRSINDLAKQLGKVTVAEFVENDQVMQHLIDLGVDYGQGYGIGHPKPLSE 531

Query: 949 ILKLLKE 955
           +++ L  
Sbjct: 532 LVEQLTA 538


>gi|332994512|gb|AEF04567.1| hypothetical protein ambt_15285 [Alteromonas sp. SN2]
          Length = 1500

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 141/552 (25%), Positives = 258/552 (46%), Gaps = 16/552 (2%)

Query: 401  FSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YI 456
                E+  LA      + + +   D  +  +TT    A + G +   + G     L    
Sbjct: 946  LHANEQLRLAGKIFERTSEAILVTDANQRILTTNETFAELTGFSQQELIGKKPELLESGE 1005

Query: 457  HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
            H  D   F   +D+ +  R G  Q E   +  D     M +    + ++NGDI+ Y+   
Sbjct: 1006 HSKD---FFAAMDASLTER-GFWQGEVINKVKDGSHVKMWLSYNAVKDANGDIVNYVAAY 1061

Query: 517  NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++I E K     I   A  D LTG+PNR   L+RL  ++  +     L   V+ +D+D +
Sbjct: 1062 SNIDEIKNMQRRIEYLATHDELTGLPNRTVLLERLELMISGAKRSKQL-CGVLFVDLDNF 1120

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K +ND LG  VGD +L  +T+R+ + ++  D+LAR+ G+ F  ++ S ++  +I D A  
Sbjct: 1121 KPVNDNLGHKVGDLLLKQVTKRLQQCIRDTDMLARIGGDEFVALI-SASHIDEIDDIAKR 1179

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +   +    ++    I+V+ASIG A + +  I+S  +L++A+ AMY AK  G N  + F 
Sbjct: 1180 IISQVQNEFDVSTHSISVSASIGIAVYPADGISSEILLQHADEAMYLAKSSGRNQYQYFT 1239

Query: 697  VSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                      ++ +  L +A++  +  +VY P        IVG EAL+++ +     +++
Sbjct: 1240 AKMKEQALARLEVEKQLKVALDGKQFSMVYQPQFEPTSNAIVGAEALLRYKNSDGEVLNA 1299

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              F+ IAE   +I+ I    +E +AR+I  +    +  P  I IN++   LL ++  +  
Sbjct: 1300 ESFINIAERGKLIETIGFHAVELVAREIAQYIQLGSKLPA-IAINLSGSQLLTSDFIKNF 1358

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             A++ +   +P   K   SE  +    ER    L  L  +G  +++DD+G   S +S L 
Sbjct: 1359 VAVLDRYELTPGLFKFEVSEKDIESGEERIYHRLRTLASMGSVISIDDYGLYKSAISQLQ 1418

Query: 875  YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
                  +K +  L+T  ++   +  ++ ++I   K +   IIA  +  +  +  L  +GC
Sbjct: 1419 QSGASEIKLSSRLLTDVSDNNDSNKLIHALINAGKALGLKIIADKVETQQQLDYLRDIGC 1478

Query: 933  DYIQDSHVASPL 944
            D +Q    + P+
Sbjct: 1479 DVVQGLVFS-PM 1489



 Score = 43.4 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 6/140 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + I    E+    +  S  ++   D              + G+ +  + G    
Sbjct: 819 ELVIAHERIEKSQEQLLSIMNNSLALIALKDNAGRYEFVNARFEEVFGVTAQDVIGKTD- 877

Query: 452 WLPYIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            L     +    FR   LD+           EF +RA   +     +R  P+ ++ G I 
Sbjct: 878 -LQIFERDTARQFREKDLDTMRTLSPVETLDEFTLRA--GKVIIKSVRF-PIFDAEGTIK 933

Query: 511 RYIGIANDITEQKKSLEGIL 530
                A DI+++  + E + 
Sbjct: 934 SICTQATDISKELHANEQLR 953


>gi|166711385|ref|ZP_02242592.1| hypothetical protein Xoryp_07950 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 803

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 214/569 (37%), Gaps = 15/569 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           VLA       + S   R   A   +   +  +D+  + +     +A IL      +    
Sbjct: 234 VLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEEL--QA 291

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +H  D           + + +     E R   AD    W       +     + 
Sbjct: 292 CTLAEVMHPEDIKLDS---RGMLDWPKLLQSGEKRFVRADGGVMWGRWSASLLEPGPEEP 348

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D++      + +  +A  D LTG+ NR     RL  +++L      +   + 
Sbjct: 349 TLVLAVIEDVSHAHDLADAVAFHARHDALTGLINRHEIEHRLQLLIEL-PRSPQMCHALC 407

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K +ND  G AVGD  L      I   L+  D L RL G+ F I+L +  +  +
Sbjct: 408 FVDMDHFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLPQ 466

Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  M   +  P +    R +T + S G      S    + ++  A+LA + AK  G
Sbjct: 467 ARALLEGMHAVLGQPWSHQGGRPLTPSCSFGVVEIRQSVSDVNSLMTAADLACHAAKEEG 526

Query: 689 GNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            N +  F  +     +          + LA+    L L    I  L D   +  E L++ 
Sbjct: 527 RNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLYAQKIQVLRDPGRLHYEVLVRM 586

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S  EF+   E   + + ++ ++LE +   + +      +  +   +N++++ 
Sbjct: 587 RASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDL-CHVNLSAQS 645

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +  + + AL  +      ++ +  +E+ V+G+ E ++  +  +R  G  + LDDFG
Sbjct: 646 IAQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFG 705

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL     D +K +   +          A + SI  +   +   ++A+ +  E 
Sbjct: 706 SGMASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEA 765

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
           DI  L   G   +Q   +  P     +L 
Sbjct: 766 DIPGLRDAGVGQVQGFSLHRPCPLEELLH 794


>gi|226944605|ref|YP_002799678.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
 gi|226719532|gb|ACO78703.1| cyclic di-GMP signal transduction protein [Azotobacter vinelandii
           DJ]
          Length = 1196

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 208/437 (47%), Gaps = 9/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +      D LTG+PNR   L R+  +L  +   D        + +D++K IN
Sbjct: 414 EREEDRQQMNRLVQLDTLTGLPNRSHLLRRIDELLVSATWGD---IACFNLGLDRFKDIN 470

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG A GD VLV++  R+   L+    L+R  G+ F ++     +    +  A  + ++
Sbjct: 471 EALGHAEGDQVLVAMANRLQRHLRPGQFLSRSEGDLFVVVAPDC-DVRSASLMAERLLQT 529

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A  I +    + ++AS+G + +         +L NA+ AMY  K  GG   + F     
Sbjct: 530 VAEQIEVGGHALNLSASVGISLYPEGGQDRDALLANAKSAMYRVKRTGGGGYQFFIPEMN 589

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R   DR+++   L  A+    L L Y P +  +  E+ G EAL +W   ++G+I  ++F+
Sbjct: 590 RALQDRLLLSAALKRAIAGDGLSLHYQPQVHTVSGELYGFEALARWHDDEFGDIPPTKFI 649

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I+AI  + L    R +  WR+   M P  + +N++  +    +L E +  L+
Sbjct: 650 GLAEETGQIEAIGRWALREACRQLAEWREGGAMVP-TVSVNLSPINFHSRDLPEFVAGLL 708

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +     + + +  +ES +M        ++  +R +G+ L++DDFGT  S LS L  +P 
Sbjct: 709 REFALPGASLTIEITESTMMALTPEMLDIVHGIRSLGVGLSVDDFGTGFSSLSNLINLPV 768

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK + S +    E+    +++ +++ +  +++ T++A+ +        L    C  +Q
Sbjct: 769 TEVKIDRSFIDKCLEENRLQSLVAAVVGIGHSLDLTVVAEGVETREQRDLLGEYRCPVLQ 828

Query: 937 DSHVASPLGFNSILKLL 953
               + P+     +K L
Sbjct: 829 GYIFSRPMSPCEAIKWL 845



 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 114/291 (39%), Gaps = 13/291 (4%)

Query: 429  TTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFV-----GYRRGRLQYE 482
                    + G  SG      +     YIH   R   R + + F             + E
Sbjct: 913  YGNRAFDQLFGYPSGHFRTADQLIEEAYIHERQRKLLRRLWNDFALPGDASGPMSIPEIE 972

Query: 483  FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              + A D Q    +     +     +    +    DI++ K+    +   AF D LT + 
Sbjct: 973  VDILAGDGQIRTALHCGLILP----EQRVAVAFYKDISDFKRDSRLLREYAFLDPLTKVA 1028

Query: 543  NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            NR+   +      + ++     R   +++D+D +K IND  G  VGD  L  +  R+  +
Sbjct: 1029 NRRGLQEW---WRNETSGGRQRRLAFLMVDLDGFKPINDTHGHDVGDAALCMVADRLKAV 1085

Query: 603  LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
            ++  D++ RL G+ FG+ ++      ++      +  S+  P+++    + ++AS+G   
Sbjct: 1086 VRDTDLVCRLGGDEFGLAMVEVEGCGQMEAICERIVASLGEPMDIGGSSVRISASVGGCL 1145

Query: 663  WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
            +        E+L+ A+ A+Y  K  G +    +     ++ R + ++    
Sbjct: 1146 YPDQAADKRELLQRADRALYRVKKAGKSGWGWWEPEQRKTARSLSEKSERE 1196



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 10/124 (8%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS---MHGPIRNWLPYIHINDRD 462
           +  +A+  +   +  ++  R  V          G   G    +        P +   D  
Sbjct: 138 QLLMAIDHTDQPMLVFNAQRQIVHVNRAFTESFGYELGEVLGLEPMAVFPSPNVSAEDLA 197

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRY-IGIANDIT 520
                    + + R R Q E  VR  +    W+ I   P       ++  Y + +  DIT
Sbjct: 198 R-----HRSLPWGRERFQTEMLVRRKNGSDFWVRISSSPFDGDEVDELNGYSVDVLADIT 252

Query: 521 EQKK 524
           E+++
Sbjct: 253 EERQ 256


>gi|24372032|ref|NP_716074.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24345901|gb|AAN53519.1|AE015492_6 sensory box protein [Shewanella oneidensis MR-1]
          Length = 856

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 240/638 (37%), Gaps = 37/638 (5%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF-- 401
           W+ + +  +G+ +     +            L+  + L+      +   T   ++ +   
Sbjct: 230 WVSLAVILLGILIVALGYVWLRACLLQPFKSLMQQLALVDPMASVYRPVTSEGNEELSVL 289

Query: 402 ------------SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                          ER  + +    + V   DI    +   P   T+L +AS +  G  
Sbjct: 290 ANRVNSLLARIYQQKERGKITLESIAEAVILTDIEAKVIYMNPKAETLLEVASSNAVGES 349

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L  +        + +              + ++         +   I  + N   +I
Sbjct: 350 ---LASLLKAGEQLNQAVFHCIRLGETMPQVAKIKLLTT--MPRIIERSISNVLNHEKEI 404

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DIT+++     +   A  D +TG+ NRQ+F ++L      +         V 
Sbjct: 405 VGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAFEEQLPEFASQAR-----SLAVC 459

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +L  + R I   L   ++LAR+ G+ FG+++        
Sbjct: 460 YLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVICDRTALAV 519

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     ++       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 520 AQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACIAAKAKGT 579

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI       +   +E L++ 
Sbjct: 580 NQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVLLRI 639

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +    +        I IN++   
Sbjct: 640 QEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLS--LNSQLWQDHCISINLSGNS 697

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             +    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 698 LGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDFG 757

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 758 SGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQE 817

Query: 923 DIKELTRMGCDYIQDSHVASPLGF----NSILKLLKER 956
            I  L  +G +Y Q   +  P             L +R
Sbjct: 818 IIDRLQTIGINYAQGYAIGRPQPLASYCEQFETRLAQR 855


>gi|330465958|ref|YP_004403701.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328808929|gb|AEB43101.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 774

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 211/442 (47%), Gaps = 13/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  + +  +   A+ D LTG+PNR +F  RL + L  +         V+++D+D +K++N
Sbjct: 328 ENLRLVARLRHLAYVDQLTGLPNRLAFTRRLRSALGGAQ-----PVAVLLLDLDGFKQVN 382

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G + GD +L  L+RR+   +    ++AR+ G+ F +++            A  +  S
Sbjct: 383 DRFGHSTGDTLLTGLSRRMRRAVADDGMIARIGGDEFAVLVTGRT--AAPERLAERLLAS 440

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +          +  +ASIG A +    +T +++L++A++AMY AK  G +       +  
Sbjct: 441 LHPSAGEEVVGVHPSASIGIAEYGPQHVTYTDLLRDADIAMYAAKAAGKSAYRRCTPALR 500

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  +  DL  AV+  +L+L + PI+ L    +   EAL++W HP+ G +S + F+
Sbjct: 501 ESAVSRAELIADLRRAVDEQQLHLEFQPIVDLSTGTVRSAEALVRWRHPRLGMLSPARFL 560

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I +I+ +++    R   +W+ Q   P   + +NIA+  L   +L   +    
Sbjct: 561 PLAEETGLILSIDRWVIHEACRAAATWQTQV--PSATVAVNIAAAHLRRPDLIATVTEAT 618

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    +P  + L  +ES ++   +     LG+LR++GI + +DDFGT  S LSYL  IP 
Sbjct: 619 AGAGLAPRALTLELTESALIEGSDAVLDRLGQLRELGIRIAIDDFGTGYSSLSYLHRIPA 678

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +   +E     A +  +  +A      ++A+ +  E     +  +GC   Q
Sbjct: 679 TELKIDRSFVARLSEDTRAYATVEMVTRLAGAYGLGVVAEGVETERQHDAVAAIGCVQGQ 738

Query: 937 DSHVASPLGFNSILKLLKERFP 958
                 P   + +  +L    P
Sbjct: 739 GYRYGRPAALDELRTVLAGSAP 760


>gi|37676311|ref|NP_936707.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200852|dbj|BAC96677.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 642

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 200/444 (45%), Gaps = 7/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  +   +  +   D LT +PNR +  D L     +++ +DN + T++   +  
Sbjct: 198 LTEIEQRTAAESHLDFHLHYDPLTKLPNRITLADDLAE--QMASLEDNEQITLIYFSLKN 255

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N   G   GD +L SL++RI   L     LAR+ G+ F +                
Sbjct: 256 FKFVNASYGYMFGDQILSSLSQRICHKLPKKWKLARIVGSDFVLAAQHLRKPEIQEQVIS 315

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            + K+   P N+ +  + +   +G A        S  +++ A  AM   K+ G      +
Sbjct: 316 RITKACTQPFNVNDMSVNLQCHLGVALAPMDATDSFSLIQRACSAMSEGKNEGLQISYFN 375

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
           F       +R+ ++  L  A++N+EL + + PII      +I+G EAL++W++P  G +S
Sbjct: 376 FAAQKAAEERLQLESHLSEALKNNELEVHFQPIICLKQGGKIIGAEALLRWNNPTLGQVS 435

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  +    W   +      + INI+     +    + 
Sbjct: 436 PDRFIPLAESNGQIIEIGYFVLHQALKQAAEWHRASPH-AFKVAINISPIQFRERHFVQH 494

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q +I         I+L  +E +++ + E ++ +L +LR+ G+S++LDDFGT  S LSYL
Sbjct: 495 LQDIIDLYQLPAKCIELELTEGILLQDEEYAQNVLAQLRQFGVSISLDDFGTGYSSLSYL 554

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      +    + R+II MA  +   +IA+ +        +    
Sbjct: 555 QKYAFDTLKIDRSFINQLEHNQHNRELTRAIIAMAHKLNMMVIAEGVEDRYQEDFIRTEE 614

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+Y Q       +  +   + L  
Sbjct: 615 CNYAQGFLYGKAVPADDFSQQLAS 638


>gi|254249082|ref|ZP_04942402.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184]
 gi|124875583|gb|EAY65573.1| hypothetical protein BCPG_03942 [Burkholderia cenocepacia PC184]
          Length = 744

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 109/511 (21%), Positives = 220/511 (43%), Gaps = 9/511 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
             +V   D              + G     + G    +  ++        R+ +  F   
Sbjct: 199 NSLVVILDRNGMVQRFNRLCEEVTGKREVDVIGR-SAFELFMSPEQGAQSRSNITGFFA- 256

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                  E  +   +    +        S S  D    I    DITE++ + + +   A 
Sbjct: 257 SNQSFAVERYINTVNGPRLFQFRNKFVQSGSGVDEQYLICSGIDITEERNAQQRLTELAN 316

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR +  +R+   +     +      ++ +D+D +K++ND  G   GD +L  
Sbjct: 317 TDVLTGLPNRHAISERIHAAIAEEDANTRGHVGILFLDLDNFKRVNDHYGHITGDRLLQD 376

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++  I   L     LARL G+ F ++         +   A  + + +  PI+L   E+  
Sbjct: 377 VSAIISGCLPSGATLARLGGDEFLVLFEHATRP-LLEATAQIILERLRTPIHLGLMEVYT 435

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLC 712
           + SIG A       +   ++++A+ AMY AK  G +    F   ++   +  + +  +L 
Sbjct: 436 SCSIGIAMHPQHGDSLETLIRSADTAMYVAKEEGKHTYRVFSLEMNQKVAKYMWLDTNLR 495

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L Y P++ +   ++  +EALI+W  P  G ++  EF+  AEE  +I  +  
Sbjct: 496 KALEEEQFVLHYQPVVDIATGDVHAVEALIRWQSPDRGLVAPVEFIRFAEESGLIAPLGR 555

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++        +   +A    + I +N++++ L D  +     +++      P  + +  
Sbjct: 556 WVMRT--AAAQAAAWKAKGLGVRIAVNLSARQLQDMNIVHQFASILDGAGLKPGLLDIEL 613

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES  + + E +  L+ + R++G  + LDDFGT  S LS L  +P D +K + + +T   
Sbjct: 614 TESCFIEDEEAANGLMRQFRQLGAEIHLDDFGTGYSSLSQLSRLPLDAIKLDRTFITAID 673

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
              +  A++RS++ +AK +   ++A+ +   
Sbjct: 674 RNPRSQALVRSVVSLAKALNLAVVAEGVENA 704


>gi|190893173|ref|YP_001979715.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698452|gb|ACE92537.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 605

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 135/587 (22%), Positives = 249/587 (42%), Gaps = 42/587 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--P 454
            Q       R  LA+  S   VW+  I +D +     +  +   A+G     +  W    
Sbjct: 19  EQEFQDLLRRLELALDASRIGVWEHSIAKDGILWDAQMHRL--YATGETCRQVPAWFWSD 76

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH +DR+      +  +  R G    +FR+     +   +  R     ++ G    +IG
Sbjct: 77  AIHPDDRERAERDFEQAIAAR-GAYDSQFRIVLPSGEIRHLRSRAHFYVDAEGAPS-FIG 134

Query: 515 IANDITE---------QKKSLEGILCNAF------------QDNLTGIPNRQSFLDRLTT 553
              D+T          ++K +      A              D LTG+PNR+    RL  
Sbjct: 135 AEWDVTADVQLNAELARQKMMAEARALALEESNARIEQVADHDYLTGLPNRRLLDKRLAE 194

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           +    A        V+ +DID +K+IND  G A GD VL +   RI   +    ++AR+ 
Sbjct: 195 L---PADRSVATLGVLHLDIDLFKQINDSHGHAAGDAVLKAAALRIAAAIPANGMVARVG 251

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L++  +  ++      +++ +   I      +   ASIG +        +  +
Sbjct: 252 GDEFVVVLVNFTDLAELKRITEDVQRRLRKKIRFGHEMLQSGASIGVSWS--GDRRARNL 309

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L  ++LA+Y AK  G N +E F          +  + E+L L +E  E+   Y   +   
Sbjct: 310 LAESDLALYQAKQLGRNRIEFFTRQLQEDLRAKRRLVEELKLGLERGEIIPYYQVQLCAT 369

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +++G EAL +W HP  G ++   F+ IA+E  +   I+  +L+R+  D   W+ +   
Sbjct: 370 TRQVIGFEALARWKHPDKGVLAPGVFLKIADEHGLAAEIDAAILKRVLEDRQIWQLRGLA 429

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGR 850
            P  I +NI++  L D  L       + K    P  I     E++ + + +      +  
Sbjct: 430 VP-RIAVNISASRLADPALLGK----LKKLDIPPGAIVFELVETIFLDDSDETLLDHIDD 484

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKN 908
           ++++GI + +DDFG+  + L  L  +    +K +  L+    S++++  ++ SI+ +AK 
Sbjct: 485 IKQLGIDIEIDDFGSGHASLIGLVKLRPKRLKIDRQLVAEVVSSDEQRRVVGSIVEIAKA 544

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +E  +IA+ I  E     L ++GCD +Q      P+      +L   
Sbjct: 545 LEVEVIAEGIETEAHATVLAQLGCDGLQGYAFGYPVPAIETDRLFSS 591


>gi|325924669|ref|ZP_08186107.1| diguanylate cyclase/phosphodiesterase [Xanthomonas perforans
           91-118]
 gi|325544875|gb|EGD16220.1| diguanylate cyclase/phosphodiesterase [Xanthomonas perforans
           91-118]
          Length = 785

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 213/442 (48%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  ++D +         V+++D++++K++ND LG 
Sbjct: 342 EQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGT-AAVLILDLERFKELNDSLGH 400

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ ++  +   A  +   +  P+
Sbjct: 401 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAASVQQDAQRLLLQLRRPL 459

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +  I + ASIG A           +L+ A++A              +R+        
Sbjct: 460 VLPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQVGTTAAFGASVYRMGQDEQHLR 519

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            ++   DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 520 RLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 579

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L++  R    WR Q       + IN+++ DL D  L + ++  +     
Sbjct: 580 SGVIHPLTRFVLDQALRCQAQWRKQGLELG--MAINLSALDLSDPGLPDFVRGCLEHHAV 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K 
Sbjct: 638 PAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELKI 697

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 698 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENTAALALLRGYGCDMVQGYLYS 757

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 758 PPLEEAPLVAWCMRQLGMTTPA 779


>gi|152996801|ref|YP_001341636.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150837725|gb|ABR71701.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 572

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/454 (24%), Positives = 216/454 (47%), Gaps = 17/454 (3%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                  I + I  + +  + +   A  DNLTG+ +R   L+ L  I+      +     
Sbjct: 120 SPQLIRAIISSI-HRAELEKKLHDMAHYDNLTGLASRPLLLENLQQIII-----NKEAAA 173

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V  +D+D +K +ND  G   GD VLV++  R+ ++L+  D LAR+ G+ F ++L   +  
Sbjct: 174 VAFLDLDNFKPVNDNYGHDTGDYVLVTIANRLKQILRKSDTLARIGGDEFVLLLRDVSCR 233

Query: 628 LKIADFAIAMRKSIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            +   F   + + +  PI L E E  + V+ASIG A  ++  + +  +L+ A+  MY AK
Sbjct: 234 DECDGFLNRLIELVNTPIALTEFECQVQVSASIGVALVSNDSLEADTILRRADQTMYQAK 293

Query: 686 HRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           + G N++  F     R       + +     ++  E  L Y P + + + +++G+EALI+
Sbjct: 294 NMGRNNIIFFDPEEERRQYARRAMLQAAERGIKLDEFELYYQPQVDMQEHQLIGVEALIR 353

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP  G +   +F  + E       I  ++L+   R    W+       + I +NIA  
Sbjct: 354 WNHPTMGFLYPGDFTEVLEHPNTGVLIGEWVLQEALRQHSIWQKN----DLVISVNIAPA 409

Query: 804 DLLDNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            LL       ++ L+     ++P+ +++   E+V + +   +  ++    K+GI + LDD
Sbjct: 410 HLLSKNFVHRLEQLLKSIPNFNPNLLEIEILETVSISDILNAVEVVKACCKLGIHVALDD 469

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL  +P +T+K + S +       +  AI+  I+ ++K     +IA+ +  
Sbjct: 470 FGTGYSSLNYLKQLPLNTLKIDRSFIQNILSDPEDRAIVACIVALSKAFNYKLIAEGVES 529

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               + L  +GC   Q   +A P+  +++   ++
Sbjct: 530 LEHEQALIEIGCLCGQGYFIAKPMTADNMTAWIR 563


>gi|89055066|ref|YP_510517.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Jannaschia sp. CCS1]
 gi|88864615|gb|ABD55492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Jannaschia sp. CCS1]
          Length = 566

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 136/562 (24%), Positives = 250/562 (44%), Gaps = 23/562 (4%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E+  LAV  S   VW++D    RV     +  I G+  G    P   W  ++H +D +  
Sbjct: 3   EKLQLAVEASQMGVWEFDEATGRVHWDDRMLEIYGIEDGLNVRPDDFWESHLHPDDLEAT 62

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---- 520
               +          + ++R+   D     +    R +    G   R IG+  D+T    
Sbjct: 63  VAYAEKCKIENTD-FRRDYRILREDGGVRHIRSLARSVVTP-GHPSRLIGVNIDVTKDYL 120

Query: 521 ---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
              E +K+   +  +A  D LTG+ NR+S  +   T+ +        R  VM +D+D +K
Sbjct: 121 RAEELQKAQRQLKYDARHDALTGLGNRRSLDEMTLTLFNRLG--PKDRYCVMHLDLDHFK 178

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND LG   GD VL ++   +G ++       R+ G+ F ++  S  +   I      +
Sbjct: 179 EVNDTLGHMAGDHVLAAIATALGRVIGKLGTCFRVGGDEFAVLFKSAPDEQVIIGLCEEL 238

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  A P     ++ +V+ SIG+A         SE+  NA+ A+Y AK+ G +  +++  
Sbjct: 239 VQDCAAPQVFEGQDCSVSVSIGYAFGEGPPHNPSEVFVNADAALYAAKNAGRSGYQAYTA 298

Query: 698 SS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +     ++D+  A+ N EL   Y P       ++VG EAL++W+ PK G ++  
Sbjct: 299 QIGEASAKASNARQDILAAIRNDELICHYQPQFDARTLDVVGGEALVRWNCPKRGLLTPD 358

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AE   ++  I+  +   +AR  ++W +     PI I +N ++  L   +L + ++
Sbjct: 359 AFLPEAERAGLLPEIDACVFSIVARQQVAWAEAGVPFPI-ISLNTSAARLRAPDLIDSIR 417

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLG 874
           A++        R+ L   E+  +   +      L  LR +G+ + LDDFG+  S ++ L 
Sbjct: 418 AVLE----PCHRMSLELLETAFLDALDDDLAFKLNALRDLGLRIELDDFGSGHSSVAALQ 473

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIA-KDIYGEIDIKELTRMG 931
            +  D VK + SL+         I  L+S+  +A+ +E   IA + +   I +  +  + 
Sbjct: 474 AVRPDQVKIDRSLIAPLASNPHQIQTLKSLARIAR-LERAAIAIEGLETGIQMAAIRSVD 532

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           CD +Q   +  P+  +    LL
Sbjct: 533 CDVLQGYTLQRPMPADDFTALL 554


>gi|126659445|ref|ZP_01730579.1| hypothetical protein CY0110_20775 [Cyanothece sp. CCY0110]
 gi|126619281|gb|EAZ90016.1| hypothetical protein CY0110_20775 [Cyanothece sp. CCY0110]
          Length = 604

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 212/438 (48%), Gaps = 6/438 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++     + +    +QD LT +PNR  F + L   L  +    +    ++++DI+ +K I
Sbjct: 159 SQLVNPKDTLEAQEYQDTLTKLPNRILFKEYLFNSLKNAKQY-HTSVAILLLDINHFKAI 217

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N   G  VGD +LV + +R+   L+  DI+AR   + F ++L   N+   I      + K
Sbjct: 218 NKNWGYPVGDKILVEVAQRLKSTLRGSDIVARWGDDEFILLLPKINHGDDIEKITQRILK 277

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRV 697
           +++ P+ L E  + +  S G A ++     S   L+ AE+A+++ K +    N      +
Sbjct: 278 NVSQPLILSETPLYLEYSFGCAVYSKDGEDSHTFLQKAEIALFNHKKKAILSNKKHHLTI 337

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               S  +  K  L  A+   EL L Y P I++   EI G EAL++W+HP  G I+  +F
Sbjct: 338 DPKASKLLKAKTALKQALNQQELELYYQPQIKIKTGEISGFEALVRWNHPDLGQINPQKF 397

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+   I  I  ++L    R   +W+D    P   I +N++   + D      ++ +
Sbjct: 398 IPIAEQTDSILMIGEWILREACRQTKAWQDMGL-PNFIISVNLSPLQIKDPNFVNIIKQI 456

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T      ++L  +E  ++ N E S  +L  LR++G+ L++DDFGT  S L++L   P
Sbjct: 457 LQETRLDSHWLELEITEKAILANSELSHQVLQALRQLGVHLSMDDFGTGYSCLNHLSKFP 516

Query: 878 FDTVKFNGSLMTG-ST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F T+K + S +       + IAI+ + I +  +++  +I + +     +  L  +GC   
Sbjct: 517 FSTLKISQSCIQELIDKPETIAIISAAIALGNSLDLRVIVEGVETHKQLDLLQHLGCREA 576

Query: 936 QDSHVASPLGFNSILKLL 953
           Q   ++ PL      + L
Sbjct: 577 QGYLLSQPLTNIEATQFL 594


>gi|86360872|ref|YP_472759.1| putative kinase protein [Rhizobium etli CFN 42]
 gi|86284974|gb|ABC94032.1| putative kinase protein [Rhizobium etli CFN 42]
          Length = 540

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 202/430 (46%), Gaps = 14/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D LTG+ NR+ F   L     +          + +   D +K +ND LG   GD
Sbjct: 112 LHQASHDVLTGLANRRQFTSDLEISFPVPKGQKLALMLLDL---DDFKPVNDTLGHGAGD 168

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL     RI  +L+  +   RL+G+ F +I        +  D A ++ ++   P  +  
Sbjct: 169 TVLKMTAERIQAVLRNGETAYRLAGDEFAVIQRG-QEPAEAEDLAGSLVRAFKEPFTIDG 227

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
            ++ V AS+G A   +      +++K A++A+Y AK+ G      F  S          +
Sbjct: 228 IDVFVGASVGIAIAPTDGNDGEQLMKAADIALYAAKNDGRGRARMFNRSMMIMLEQRETL 287

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L +A++  + ++ Y P++ L +  IVG EAL++W HP  G +  S F+ +AE   ++
Sbjct: 288 RRSLRVALKERQFFIEYQPLVELSEG-IVGFEALLRWRHPYAGVVPPSVFIPMAEADGLM 346

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++LE+  R+  +W          + +N++  + L     + +  ++    +   R
Sbjct: 347 GDIGAWVLEQACREASTWPSHFI-----VAVNLSPAEFLRRSFTDRVSGILDAAEFPAER 401

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E+V++    ++  +L  L  +G+ + LDDFGT+ S LSYL   PFDT+K +   
Sbjct: 402 LEIEITETVLLERTTKNLDILHTLEVLGVRIALDDFGTRYSSLSYLQSFPFDTIKIDRHF 461

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    +  K   I+R +I +A  +   I A+ +        L R  CD +Q   + +P+ 
Sbjct: 462 IKDVETNPKSQTIVRFVIGLAHGLGMRITAEGVETAGQATWLRREKCDRLQGHLLGAPMS 521

Query: 946 FNSILKLLKE 955
             +I   L++
Sbjct: 522 SEAIGDFLRQ 531


>gi|167624570|ref|YP_001674864.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167354592|gb|ABZ77205.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
          Length = 574

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/565 (20%), Positives = 230/565 (40%), Gaps = 36/565 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-----N 451
           +Q   +  +  +  +  +   +       +      D   +LGL    +   +       
Sbjct: 5   TQQTVALRQYLTGIIGNAPFGILTISEEMEISIINADAIKLLGLPLSDLADMVDIPYSEA 64

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           ++           +   ++ +  ++ R     R++ A+     +  R          +  
Sbjct: 65  FVNI--PE----LQENFETSIIGKQSRQCDLSRIK-ANAYILNIKCRSM--------LHG 109

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + I  ++T+Q +  + +L  A  DNLT + NR+ F +RL   +  S     L   V+ I
Sbjct: 110 TLVIIENVTKQAELEDKLLYQATHDNLTKLANRKQFEERLKRFIAKSKLH-TLSGAVIFI 168

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DID++K +ND  G A GD++L  +T  +   ++  D LARL G+ F I+L   + +  + 
Sbjct: 169 DIDRFKPVNDTAGHAAGDELLKRVTAIMKTNIRERDTLARLGGDEFSILLEMCSLNKAVQ 228

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 ++  +      ++   V  S G +       T S ++  A+ A   AK+ G N 
Sbjct: 229 IAEKIRKEIESFVFTYGKKSFKVGISAGISLVNVPYDTVSAIINAADNACQIAKNNGRNR 288

Query: 692 VESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDH 746
           V    + +         V     L  A+ +++  +    I  +   E     E LI+   
Sbjct: 289 VHVINLENGELEEHIREVEWLGKLNWALASNQFVIYAQKICAIGGGEESSHFEVLIRLKD 348

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+  AE   ++  I+ ++L+     I         P     IN++ + L 
Sbjct: 349 EDGMIISPGVFIPPAERYDLMPDIDRWVLKATFSKI--------TPSCNYSINLSGQTLS 400

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D+ L   ++ L+     +P +I    +E+  +   +++  L+  L++ G   +LDDFG+ 
Sbjct: 401 DDSLINYIENLLDTYNVNPKQICFEITETAAIQELDKTVALISCLKQKGFCFSLDDFGSG 460

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S  SYL  +P + +K +G  +          A+++SI  +   +    IA+ +  E  +
Sbjct: 461 LSSFSYLKKLPVNYLKIDGDFVKDIATDSVSYAMVKSINEVGHTMGLKTIAEFVESEAIL 520

Query: 925 KELTRMGCDYIQDSHVASPLGFNSI 949
            +LT +G DY+Q  ++  P  F  +
Sbjct: 521 AKLTEIGVDYVQGYYIHEPQPFEKL 545


>gi|188575690|ref|YP_001912619.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520142|gb|ACD58087.1| Putative signal protein with PAS(PAC), GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 798

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 214/569 (37%), Gaps = 15/569 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           VLA       + S   R   A   +   +  +D+  + +     +A IL      +    
Sbjct: 229 VLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEEL--QA 286

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +H  D           + + +     E R   AD    W       +     + 
Sbjct: 287 CTLAEVMHPEDIKLDS---RGMLDWPKLLQSGEKRFVRADGGVMWGRWSASLVEPGPEEP 343

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D++      + +  +A  D LTG+ NR     RL  +++L      +   + 
Sbjct: 344 TLVLAVIEDVSHAHDLADQVAFHACHDALTGLINRHEIERRLQLLIEL-PRSPQMCHALC 402

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K +ND  G AVGD  L      I   L+  D L RL G+ F I+L +  +  +
Sbjct: 403 FVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLPQ 461

Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  M   +  P +    R +T + S G      S    + ++  A+LA + AK  G
Sbjct: 462 ARALLEGMHAVLGQPWSHQGGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEG 521

Query: 689 GNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            N +  F  +     +          + LA+    L L    I  L D   +  E L++ 
Sbjct: 522 RNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLYAQKIQVLSDPGRLQYEVLVRM 581

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S  EF+   E   + + ++ ++LE +   + +      +  +   +N++++ 
Sbjct: 582 RASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDL-CHVNLSAQS 640

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +  + + AL  +      ++ +  +E+ V+G+ E ++  +  +R  G  + LDDFG
Sbjct: 641 IAQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFG 700

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL     D +K +   +          A + SI  +   +   ++A+ +  E 
Sbjct: 701 SGMASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEA 760

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
           DI  L   G   +Q   +  P     +L 
Sbjct: 761 DIPGLRDAGVGQVQGFSLHRPCPLEELLH 789


>gi|307719095|ref|YP_003874627.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM
           6192]
 gi|306532820|gb|ADN02354.1| hypothetical protein STHERM_c14140 [Spirochaeta thermophila DSM
           6192]
          Length = 676

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 133/674 (19%), Positives = 269/674 (39%), Gaps = 19/674 (2%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
             I  +     +   V   +   +L  +       ++   +  +     +     L+ + 
Sbjct: 13  FSILGVCLGISFLGYVIFILMGSSLTGVYAV-LAGLLPLSLAYFLGVRRVTVVTALLLVG 71

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
                 +  + L    +    +G L L++      VI+++         +    +    A
Sbjct: 72  VTEFAASGARGLYLQDVPARYMGDLFLLMGGALLEVIRYLRK------EVRERSKEFLFA 125

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILD 469
           +  + +  + +   R     +                 P R +   IH  DR+    I  
Sbjct: 126 LDTAEEGFFRYTPWRGEFVFSKRYCEHFAPELSPFVPYPARVFFENIHPMDRERVEEIFV 185

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEG 528
           S       R  +E RVR A   F  + +        NG     +IG   D+T+ ++  E 
Sbjct: 186 SRHWAEGQRFSFECRVRRASGGFLTVKVYGLVYIAENGRRHPVFIGFMEDVTQTRELEER 245

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +     +  ++G+     F +R+             +  ++V   +   ++ D+ G    
Sbjct: 246 LDELTHRHRISGLETAPRFYERVG---ARVGRGTEGKLALLVASPEDLSEVTDLYGHEAR 302

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D ++  +  R   + +  D+L  +    F   L   ++S  +A FA  +  + A P  + 
Sbjct: 303 DLIIKEIADRFLLVKRRGDLLFHIEDQTFVFTLEGASSSGDVALFAQRILDTFARPFFVR 362

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMI 707
              + ++  +G A +  +  ++  +L++AE A++HA+  R G    S  +    + R+  
Sbjct: 363 GTPVYLSGVVGIALYPENGGSAEVLLQHAEAALHHARRERSGFRFYSQSMLQGAATRLRR 422

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL L Y P++   +  +VG EAL++W HP+ G I  SEF+ IAE+  +I
Sbjct: 423 MRDLQRALREEELELYYQPLVS-SEGVVVGAEALLRWRHPREGLILPSEFVPIAEDTGLI 481

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  +++ R A     WR +     + I +N++ + + D +L + ++  +S+    P  
Sbjct: 482 LPLGRWVISRAAEAWGRWRREGL-SSLTISVNLSPQQIRDRQLVDHLRETLSQHGIPPGY 540

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E   + +   SR    RL ++GI + LDDFGT  S   Y+   P   +K + S 
Sbjct: 541 LTLEITERTFLEHMG-SREFFSRLEEMGIGIALDDFGTGYSTFQYIKQYPVKAIKIDKSF 599

Query: 888 MTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G     + +AI+++I+ +A  +   +IA+ +  E     L    C   Q      PL 
Sbjct: 600 VQGLPARGEDVAIIQAILTLADGLGLAVIAEGVENEQQALLLRTFNCQVFQGFFYKEPLR 659

Query: 946 FNSILKLLKE-RFP 958
               ++ +K    P
Sbjct: 660 EEEFIQYVKALHRP 673


>gi|111225318|ref|YP_716112.1| hypothetical protein FRAAL5972 [Frankia alni ACN14a]
 gi|111152850|emb|CAJ64597.1| Conserved hypothetical protein; putative membrane protein [Frankia
           alni ACN14a]
          Length = 645

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 212/437 (48%), Gaps = 8/437 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + L      A  D+LTG+ NR+ F++RLT       T       ++++D+D++K+IND
Sbjct: 126 EVQQLAESRVLARTDDLTGLANRRGFIERLTRA--EQHTTGPDTFALLLLDLDRFKEIND 183

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L  +  RI + L+  D+ ARL G+ F ++L   +           +   +
Sbjct: 184 SLGHQVGDALLTQVGTRISDALRPGDLHARLGGDEFAVLLEHADADAARRVADRVL-TVL 242

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSF 700
           A P ++    + V ASIG A +      +  +L+ A++AMY AK  R G           
Sbjct: 243 ADPFDVGGVTLHVGASIGAAVYPDHAQDAHTLLQRADVAMYAAKSGRTGVESYRPGADVN 302

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ + E L  A+   +L + Y   + L    +  +EAL++W HP  G +   EF+ +
Sbjct: 303 SLVRLDLIESLRAALGTGQLEVHYQVKVDLGSGRMDAVEALVRWRHPTRGLLGPEEFVPL 362

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   ++ + + +L         W        + + +N+++ DLLD      +  +++ 
Sbjct: 363 AEQAGFMRMLTIEVLHTALDQCRRWHAAGLE--VAVAVNLSASDLLDRGFPAQVSGMLAG 420

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP+ ++L  +E+ +M +  RS  +LG LR +G+ + +DD+GT  S L+ L  +P + 
Sbjct: 421 FGLSPAALELEITETTLMLDRVRSATVLGELRALGVGIAVDDYGTGYSSLARLLELPVNV 480

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +    +     AI+RS + +A  ++  I+ + +     ++ L  +GCD  Q  
Sbjct: 481 LKLDKSFIQRVADDSRAEAIVRSTVSLAHALDLRIVVEGVETAAAVRMLRDVGCDLAQGY 540

Query: 939 HVASPLGFNSILKLLKE 955
            +  P     + + L++
Sbjct: 541 FLGEPGPSELVTEQLRQ 557


>gi|222147256|ref|YP_002548213.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221734246|gb|ACM35209.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 481

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/435 (25%), Positives = 200/435 (45%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  +   +   A  D LTG+PNR++  DR   +    A  D     +  ID+D +KK+ND
Sbjct: 41  RNAAENNMDWLAHHDALTGLPNRRALSDRQAEM---EALQDGRHWVIYSIDLDGFKKVND 97

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           ++G   GD +L  + +R+   L     + R+ G+ F ++     N          + + +
Sbjct: 98  LVGHQGGDLLLREVAQRLMHAL-PNADVYRMGGDEFLLVSPRPTNMD-YRHAGQHIARLL 155

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P ++      + AS+GFA +        +    A++AMY AK  G N V  F      
Sbjct: 156 CNPYDIGGMTSEIGASVGFALFPEDSDDFKDATHCADVAMYVAKKAGQNSVYGFERIMED 215

Query: 702 SDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                 + +  L  A+ ++ +   Y P+I L   E+ G EAL +W       +  S+F+ 
Sbjct: 216 RVMRRAETEMALKRAIRDNLIVPYYQPLIDLKSGELRGFEALARWKTGPNHYVPPSDFIE 275

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I  ++  +  +   D + W D      + +  NI+    +D +L   + +++ 
Sbjct: 276 LAETAGLIVELSDSLFRQACLDALQWPDT-----VRLAFNISPTQFIDRQLSLRIMSILM 330

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T + PSR+++  +E+ ++ + E +  +L  LR+ GI + LDDFGT  S LS L    FD
Sbjct: 331 ETGFPPSRLEIEITETALVHDIELATQILADLRQSGIRIALDDFGTGYSSLSQLSKFTFD 390

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +      +K+  I+R+I+ + + +     A+ I  E  +  L  +GCD+ Q 
Sbjct: 391 KIKIDRSFVMSYDVDKKQEDIMRAILGLGQGLGIATTAEGIEDENQLAFLKSIGCDFGQG 450

Query: 938 SHVASPLGFNSILKL 952
              +  L     L L
Sbjct: 451 FLFSKALPAEEALSL 465


>gi|221214028|ref|ZP_03587001.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia multivorans CGD1]
 gi|221166205|gb|EED98678.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia multivorans CGD1]
          Length = 611

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 243/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSEASLRFIGYHRDYLHT--LTLRDLIAEQDTAALEDLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + +R + + +  +  +   A DI+  +     +      D +TG+
Sbjct: 121 MSIVKSL---TYPLDVELRAVKSRHHGVEGFAIAAFDISSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A D+     ++++D+D Y++IN  LG   GD +L    RR+  
Sbjct: 178 DNLSALVPALIRA-QQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRT 236

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   ++LAR++ ++F ++L               A  ++ ++  P     + + ++ASI
Sbjct: 237 LVAPDELLARVASDKFAVVLAAPDRTRACDAADALARRLQAAVREPYTYHGQPVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P  ++ LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +    + 
Sbjct: 596 LARRFAAQQ 604


>gi|254483096|ref|ZP_05096330.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036618|gb|EEB77291.1| cyclic diguanylate phosphodiesterase domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 568

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 224/448 (50%), Gaps = 11/448 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K++ + I   + +D+LTG  NR  F   +   ++ S   D     ++ I++D++  IN
Sbjct: 121 QLKQARDTIQQLSNRDSLTGALNRAGFRAHMERAMERSERYD-FNTALLYINMDQFANIN 179

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD ++ +++RR+   ++  D +ARL G+ F I+L   +N   +   A  M KS
Sbjct: 180 DHYGETDGDLLIKTISRRLINKMRSTDSIARLGGDEFAIVLEDVSNFRDVELIAEKMIKS 239

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
           I  P+ L E+++++ ASIG A +       SE++  A  AM  AK          S +++
Sbjct: 240 ITAPMILSEQQVSIDASIGAAIYPDDGKQFSELVDFARSAMQQAKSVEGSKYIRYSEQLT 299

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +  +L  AV  ++  L Y P I L   ++VGLEAL++W+HP+ G +  SEF+
Sbjct: 300 FDQGGSNSLAAELRTAVRQNQFELHYQPRIDLTTGKLVGLEALLRWNHPERGLLCPSEFI 359

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           +  E++ +++ I   +++        W ++  +  + + +NI+     D+   + ++ +I
Sbjct: 360 VACEDMGLLRTIGYQVIQHACA-AQVWVEEQGIRDVDVAVNISFSQFQDDRFVDIVKDII 418

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++    SR++   +E+ ++ +PE  +  + +LR +GIS +LDDFGT  S LS+L  +P 
Sbjct: 419 KRSGTDASRLEFELTETTILKSPEAVKGRMDQLRLLGISFSLDDFGTGFSQLSHLTELPI 478

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +        + A+   II MA+ +   ++A+       ++ L    C  +Q
Sbjct: 479 SALKIDACFVRDLPHNPHQEAVCAMIIEMARRLGMMVVAEGAETHEQVEYLREHKCQQVQ 538

Query: 937 DSHVASPLGFNSILKL-----LKERFPL 959
             + +  +    + +      L+ R PL
Sbjct: 539 GFYYSPAIPLQQLPRFVKQLHLQRREPL 566


>gi|206559456|ref|YP_002230217.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
 gi|198035494|emb|CAR51372.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia
           J2315]
          Length = 580

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 241/549 (43%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 32  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTPALEGLLARAARSGQVEKAT 89

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 90  MCIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGL 146

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +         ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 147 DNLSALVPALMRAQQTADEHGTC-AALLLLDLDDYQRINRALGYDAGDTLLRETAQRLKA 205

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 206 LVTPNERLARVASDKFAVVLNAPDRAQASQAADALARRLQAAVREPYVYHGQTVHLSASI 265

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 266 GIALYPDERAAPHRAQHHSPLLRRADHALSQAKASGGNALAFHAPVDDPADAERLKLEAD 325

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 326 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 385

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 386 GNWVLKAACMQLVAWDGQGLALQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 444

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 445 EITESLLMHDPAHAKVLLEELTDLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 504

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 505 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 564

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 565 LARRFEAQQ 573


>gi|83644826|ref|YP_433261.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632869|gb|ABC28836.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 820

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 211/456 (46%), Gaps = 25/456 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  + +   A+ D+LTG+PNR + +  +  +L     +      ++ ID+D +K+INDV
Sbjct: 361 RQYTQELKTQAYTDSLTGLPNRHA-MAHMLALLMARNEERKQSLALLFIDLDGFKQINDV 419

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILA-------------------RLSGNRFGIILIS 623
            G  VGD +L ++T R+  +L+  D++                    RL G+ F II+ +
Sbjct: 420 YGHQVGDSLLTAVTGRLSSVLRPSDVIYQISEEDALDETDEERNILFRLGGDEFTIIVPN 479

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  A  A  +   +  P  +  +E  + ASIG A         + ++K A+ AMY 
Sbjct: 480 IGARKNAAAVAQRVLDQLKPPFKVEGQETFIGASIGIAMCPDDADGVNNLIKYADTAMYS 539

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G    E F      S++  +  D  +  A++  E  + + PII L    + G EAL
Sbjct: 540 AKAHGKMRFEFFSPQLEHSEQARLALDNLISKALDKDEFIICFQPIIDLRTRRLAGFEAL 599

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +    + G IS  EF+  AE+  MI  I L +       + +  ++ ++ P  + INI 
Sbjct: 600 ARLYSGQHGWISPLEFVPAAEKRGMIDHITLLVASHACEFVKALEEKYHLQP-SVSINIT 658

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L   ++ + +  L+ +   S +  +   +ES +  N +   + L +LR  G  ++LD
Sbjct: 659 AGQLAVGKVFDKINQLLVEFGMSRNIFEFEVTESALFENRKGCAVTLDKLRNQGFRVSLD 718

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           +FG   S LS+L    F+T+K + S +    +     AIL SII MA+ ++  ++A+ I 
Sbjct: 719 NFGVGYSSLSHLKKFSFNTLKIDRSFLRDLHDDEAGQAILSSIIAMARKMDMAVVAEGIE 778

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ +  +G    Q    + PL   + L L ++
Sbjct: 779 TMQQLEVVESLGIHLAQGYLFSPPLPAEAALALYEQ 814


>gi|116250256|ref|YP_766094.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254904|emb|CAK05978.1| putative transmembrane sensory box GGDEF/EAL domain signalling
           protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 540

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 117/457 (25%), Positives = 215/457 (47%), Gaps = 20/457 (4%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR   ++ ++  + ++ + +   A  D LT +PNR+         +     +      V 
Sbjct: 94  LRIRDLSREVHRRLQAEKNVDWIACHDTLTELPNRRFLDSVCAQAMSDQREE---TYAVF 150

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +KK+ND+LG   GD VL ++ +R+  L    + + RL G+ F ++     N   
Sbjct: 151 SIDLDGFKKVNDLLGHDHGDAVLKTVAQRLSSLF-PREHVFRLGGDEFVVLARRTGNPD- 208

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +A     +   I  P       + + AS+GFA +  +    SE++++++ AMY AK +G 
Sbjct: 209 LAALGNRIVSVIGKPFAFNGVAVDLGASVGFALYPENGDDLSEVIRHSDCAMYVAKKQGR 268

Query: 690 NHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N V+ F  S        I  + DL  A+  +E+   Y P++ L   +I+G EAL +W   
Sbjct: 269 NLVKPFVPSMQDELAKRIRVEADLRAAIRKAEIVPYYQPLVDLKTNKIIGFEALARWKSA 328

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               I  +EF+ +AEE  +I  +   +L     D +SW  +     + +  N++   L D
Sbjct: 329 SGEFIPPNEFIPVAEEAGLIVELTDQLLRHACTDALSWPSE-----LVLSFNLSPIQLSD 383

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++        R++L  +ES ++ +   +R++L  L   G+ + LDDFGT  
Sbjct: 384 RLLGLRILKILGDVGLPAHRVELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGY 443

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L    FD +K + S ++   + +K+  ++++II +   +  TI A+ I  E  ++
Sbjct: 444 SSLSQLSNYRFDKIKIDRSFVSSFETNDKQDKVIKAIIALGAGLGVTITAEGIEEESQLQ 503

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI------LKLLKER 956
            L  +GCD  Q   +  P     +       ++L+ R
Sbjct: 504 RLQDLGCDIGQGYLLGRPAPAAELATDHISTRILQRR 540


>gi|84623096|ref|YP_450468.1| hypothetical protein XOO_1439 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367036|dbj|BAE68194.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 798

 Score =  409 bits (1052), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 214/569 (37%), Gaps = 15/569 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           VLA       + S   R   A   +   +  +D+  + +     +A IL      +    
Sbjct: 229 VLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANILLYRPEEL--QA 286

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +H  D           + + +     E R   AD    W       +     + 
Sbjct: 287 CTLAEVMHPEDIKLDS---RGMLDWPKLLQSGEKRFVRADGGVMWGRWSASLVEPGPEEP 343

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  D++      + +  +A  D LTG+ NR     RL  +++L      +   + 
Sbjct: 344 TLVLAVIEDVSHAHDLADQVAFHACHDALTGLINRHEIERRLQLLIEL-PRSPQMCHALC 402

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D +K +ND  G AVGD  L      I   L+  D L RL G+ F I+L +  +  +
Sbjct: 403 FVDMDYFKLVNDTFGHAVGDKFLCHFADVITMQLRPGDWLGRLGGDEFAILLAN-TDLPQ 461

Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  M   +  P +    R +T + S G      S    + ++  A+LA + AK  G
Sbjct: 462 ARALLEGMHAVLGQPWSHQGGRPLTPSCSFGVVEIRQSASDVNSLMTAADLACHAAKEEG 521

Query: 689 GNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            N +  F  +     +          + LA+    L L    I  L D   +  E L++ 
Sbjct: 522 RNRIRCFNETDVALAQRRHDGGWISAVQLAIAEERLLLYAQKIQVLSDPGRLQYEVLVRM 581

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S  EF+   E   + + ++ ++LE +   + +      +  +   +N++++ 
Sbjct: 582 RASDGRVLSPGEFLPAVERYGLGRMVDTYVLESLCAQLSANPMHLAILDL-CHVNLSAQS 640

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +  + + AL  +      ++ +  +E+ V+G+ E ++  +  +R  G  + LDDFG
Sbjct: 641 IAQPDFLDFVCALFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFG 700

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL     D +K +   +          A + SI  +   +   ++A+ +  E 
Sbjct: 701 SGMASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEA 760

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
           DI  L   G   +Q   +  P     +L 
Sbjct: 761 DIPGLRDAGVGQVQGFSLHRPCPLEELLH 789


>gi|260777452|ref|ZP_05886346.1| hypothetical protein VIC_002846 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607118|gb|EEX33392.1| hypothetical protein VIC_002846 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 535

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 218/447 (48%), Gaps = 11/447 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               I +     +    NA  D+LT +PNR+  ++ +  +++      N    +M++DI 
Sbjct: 87  SLQSIEQLHLLADEEKHNALHDSLTALPNRKHCIETIELLIE-----SNKPFDLMLLDIV 141

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K++ND +G   GD +L+ + +RI  LLK  D +AR+ G+ F II +  +N       A
Sbjct: 142 NFKQVNDGMGHFCGDQLLIQIGQRISSLLKKEDFIARIGGDEFVIICLD-SNEASAKALA 200

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVE 693
             +   +  P  +   E++  A IG + +      + +++  A++AMY AK  G      
Sbjct: 201 KEIDVELRKPFAIDGFELSTGAVIGLSEFPRHGDDAEQVIHAADVAMYWAKKSGHLVACY 260

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             ++S     ++ I  ++  A+ + E  + Y PI+   +  + G EALI+W  P    +S
Sbjct: 261 DDKMSQGAKRKLRIAREIDAALLHDEFCVYYQPILCGTNAFVCGYEALIRWLKPDGTLVS 320

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE+   I +I  ++L++++ DI   +      P  + +N+++KDL+ N L   
Sbjct: 321 PVEFIPVAEQSNKITSITSWVLDQVSADIEKLKKNGIDCP--VHVNLSAKDLMGNNLKRQ 378

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ LI         + L  +ES  +        LL  L+ +G  ++LDDFGT  S LS L
Sbjct: 379 LEKLIQIYPDITETLILEITESTAINRLRSPEKLLESLKNLGFKISLDDFGTGYSSLSLL 438

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +    + ++  +I+ + I +A  +  T++A+ +  E  +  L   G
Sbjct: 439 RDLPVDQIKIDRSFLYQLETNQRNGSIVSNAIALAHGLGYTVVAEGVEDERVLNMLRHYG 498

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958
           CDYIQ    +  L  +  ++  ++  P
Sbjct: 499 CDYIQGFFYSPALKIDEAIRWTQKHNP 525


>gi|330981614|gb|EGH79717.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 784

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 214/430 (49%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + ++    I++ +    
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSSIAADRA-----VALLSLSVENLATISESVSAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L  + +R+   L+  D +ARL  N F ++L + +++  +   A A+++ ++ P  +
Sbjct: 407 LDQLLRQVGQRLQSNLRAGDTVARLGANEFLLLLDNTSSAGAV-GMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              E+ +   IG   +     ++ E+L  A +A    A   G   +           ++ 
Sbjct: 466 DNHELELECCIGITVYPEHGDSAQELLNRAVIARKDAAFLPGRLQIYQDGRDLAHQRQIT 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++G++S +EF+++AE    
Sbjct: 526 LIRDLRKAAQNGELMLHYQPKLDIRQGYVRQAEALLRWAHPQFGSVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 IYLLTNWVIEEAMRQLAEWRKRGLV--LQVSVNISADDLLGDDLVGYVVKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|156333145|ref|XP_001619378.1| hypothetical protein NEMVEDRAFT_v1g224246 [Nematostella vectensis]
 gi|156202459|gb|EDO27278.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 212/441 (48%), Gaps = 12/441 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   AF D LT +PNR  F   +   +     D     T+++ DID ++ IND L
Sbjct: 14  RMFQKMEALAFDDVLTRLPNRNGFTRLVAEQI-----DAGQPFTLILADIDNFQAINDGL 68

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+ +L  + + +  L     +L R+S + F I+L    ++ ++     A+  S   
Sbjct: 69  GYLTGNALLKWMAKHLKTLFPKDSLLGRVSSDIFSILLPH-TDAARVVQLLEALEHSFDD 127

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
            +++ E EI V+ ++G   +      + ++++ A +A+ HAK         F     +  
Sbjct: 128 SVDIDEYEIPVSLTMGLVRFPEHGRDADQLMQYASIALKHAKKNQRAGYTEFGAEYEQAL 187

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ +   L   VE +EL LVY P + L +++I+G EAL++W H     I  ++F+  A
Sbjct: 188 QNRLHMAAQLRHCVERNELKLVYQPQVCLANKQIIGAEALVRWQHQD-KIIPPNDFISTA 246

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  +  ++LE   R  ++W +      + + +N++ + L D    E +  ++ +T
Sbjct: 247 ESSGYIVPMGYWILEEACRQQVAWHNATGQ-ALKMAVNVSVRQLKDPHFIERLDTILQRT 305

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             + + +++  +ES+VM +      +L  +R  GI L +DDFGT  S LSYL ++P + +
Sbjct: 306 QIATAHLEMEVTESLVMDSSGALNQVLHSIRARGIQLAMDDFGTGYSSLSYLQHLPINHL 365

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +  AI   +I + K +  ++IA+ +  E    EL R+GC   Q   
Sbjct: 366 KIDRSFINRLLENHEGNAITALMIQIGKQLNLSVIAEGVETEAQQDELIRLGCPIAQGYL 425

Query: 940 VASPLGFNSILKLLKERFPLV 960
            + PL       LL  + P +
Sbjct: 426 YSKPLLEADFRALLLSQTPAL 446


>gi|187923565|ref|YP_001895207.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
 gi|187714759|gb|ACD15983.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia phytofirmans PsJN]
          Length = 604

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 125/574 (21%), Positives = 251/574 (43%), Gaps = 24/574 (4%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           Q   S   +    V G+ D++   D     +  +      +G     +     +    + 
Sbjct: 33  QAAASRAAQLEQVV-GAVDLLAHVDDELRFIYVSEASLRFIGYHREYLETITLH--DLVA 89

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D     T+L                +++     + + + +R + +S+     Y     
Sbjct: 90  PADVPRLDTLLTRAAVSGNVEKATLSLIKSL---TYPITVELRVVRSSHDGTAGYAIAGF 146

Query: 518 DITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           D++  + + E  L  A   D LT + N+ + +  L      +         ++++D+D Y
Sbjct: 147 DVSAWRATEER-LTQALHLDRLTNLANQSALIPALLDAQQQADAH-GTPAALLLLDLDDY 204

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
           +++N  LG   GDD+L   +RRI  +    + +AR++ + F I++    +          
Sbjct: 205 QRVNRALGYDAGDDMLRDTSRRILNMTSPSETVARVASDEFAILVKPAASRTDAAAAAET 264

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTS--SKITSS----EMLKNAELAMYHAKH 686
            A  +  +I  P     +++ ++ASIG A +        ++     +L+ A+ A+  AK 
Sbjct: 265 LARRLLTAIQQPYVFNGQQVHLSASIGIALYPDVRHANDTAGHDTHLLRWADHALLQAKA 324

Query: 687 RGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GGN +  +    +   ++R+ ++ DL   V N E  L + PI       +VG+EALI+W
Sbjct: 325 AGGNTLAFYVPDDNPADAERLKLEADLYDGVRNGEFSLHFQPITSSRTHGVVGVEALIRW 384

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G +  S F+ +AE + +I  +  ++L+     +I W  +      ++ +N++ + 
Sbjct: 385 LHPVHGLVPPSMFIPLAESIGLINFLGNWVLKVACMQLIQWDAKGISLQ-YVAVNVSPQQ 443

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D    + ++  I  T   P R+    +ES++M +P  ++ LL  L  +GI   +DDFG
Sbjct: 444 FRDPRFKDSVREAIELTGIDPRRLVFEITESLLMHDPAHAKGLLEDLTAMGIRFAVDDFG 503

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL   P   +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E 
Sbjct: 504 TGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEA 563

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               LT MGCD+IQ   V   L  + + +  + R
Sbjct: 564 QRALLTEMGCDHIQGWLVCKALPSDELAQRFEAR 597


>gi|323494144|ref|ZP_08099260.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
 gi|323311771|gb|EGA64919.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
          Length = 628

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/445 (23%), Positives = 199/445 (44%), Gaps = 7/445 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  +   +  +   D LT +PNR +  D L     +++ +D+ + T++   +  
Sbjct: 186 LKEIEQRTAAENHLDFHLHYDPLTKLPNRITLADDL--AKQMASLEDDEQITLIYFSLRN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N   G   GD +L SL++RI   L     LAR+ G+ F +                
Sbjct: 244 FKFVNASYGYMFGDQILSSLSQRICHKLPKKWKLARIVGSDFVLAAQHLRTPELQEQAIE 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +   P ++    I +  ++G A        S  +++ A  AM   K+ G      +
Sbjct: 304 RITNACTQPFSVNGMSINLHCNLGIAVAPLDATDSFSLIQRACSAMSEGKNEGLQVAYFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
           F       +R+ ++  L  A++N+EL + + PII      +I+G EAL++W +P  G +S
Sbjct: 364 FAAQKAAEERLRLESHLSKALQNNELEVHFQPIICLKQGGKIIGAEALLRWSNPTLGQVS 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  +    W   +      + INI+     +    + 
Sbjct: 424 PDRFIPLAESNGQIIEIGYFVLHQALKQAAEWHRTSPH-SFKVAINISPIQFQEQHFVQH 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q +I         ++L  +E +++ + E ++ +L +LR+ G+S++LDDFGT  S LSYL
Sbjct: 483 LQDIIDLYQLPAKCVELELTEGILLQDEEYAQNVLAQLRQFGVSISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      +    + R+II MA  +   +IA+ +        +    
Sbjct: 543 QKYAFDTLKIDRSFINQLEHNQHNRELTRAIIAMAHKLNMMVIAEGVEERYQEDFIRTEE 602

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C+Y Q       +  +   + L  +
Sbjct: 603 CNYAQGFLYGKAVPADEFTQQLTSK 627


>gi|302186926|ref|ZP_07263599.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 784

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/430 (25%), Positives = 214/430 (49%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + ++    I++ +    
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSSIAADRA-----VALLSLSVENLVTISESVSAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D VL  + +R+   L+  D +ARL  N F ++L + +++  +   A A+++ ++ P  +
Sbjct: 407 VDQVLRQVGQRLQGNLRAGDTVARLGANEFLLLLDNTSSAGAV-GMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
              E+ +   IG   +     ++ E+L  A +A   A    G   +           ++ 
Sbjct: 466 DNHELELECCIGITVYPEHGDSAQELLNRAAIARKDATFLPGRLQIYQDGRDLAHQRQIT 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAAQNGELMLHYQPKLDIRQGYVRQAEALLRWAHPQFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 IYLLTNWVIEEAMRQLAKWRQRGLV--LQVSVNISADDLLGDDLVGYVVKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|323528930|ref|YP_004231082.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323385932|gb|ADX58022.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 644

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 219/452 (48%), Gaps = 10/452 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G +   +    D      + E     A  D+LTG+PNR    + L       A   + 
Sbjct: 185 AAGFLTVALRSNRDTVALLLARESSQRLAHHDSLTGLPNRARINELLLERTAAGAAQRDG 244

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ E++   DI+ RL+G+ F +I  + 
Sbjct: 245 LFAVLLIDLDGFKAINDSLGHAAGDQILQEAAVRLREVMPATDIVGRLAGDEFVVISEAP 304

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             S  +   A ++ K++A P +L E  + + AS+G A +     T  ++L  A+ A+Y  
Sbjct: 305 EPSRDVRLLADSIVKTLARPFSLSEALVHIGASVGVALYPEHASTGPQLLICADRALYAV 364

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F      SD    +++ DL  A+     L + Y PI+ L    + G EAL
Sbjct: 365 KRSGKSAYAIFDAEQHVSDESLSLLRSDLEGALRTFGGLRMEYQPIVDLASGAVTGREAL 424

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +S S F+  AE   +I A+  + L +  ++ + WRD      + + +N++
Sbjct: 425 IRWTHPTRGELSPSAFIPTAERTGLILALGEWALLQSCKEAVVWRD-----KVPVAVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      +  ++ KT   P R+ +  +E+V++ +   +R  + RLR +GI L LD
Sbjct: 480 PVQLREETFASIVAGVLRKTRLPPERLNIEVTETVLLNDDIVTRRNISRLRALGIGLALD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  S  +R   A++R I+ +A+ I     A+ I 
Sbjct: 540 DFGTGFSTMSTLVRFTFDKLKIDSSFVKESVHRRESAAVVRGIVALAREIGMPTTAEGIE 599

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E  +  + R GC + Q   +  P+  + I +
Sbjct: 600 TEEQLDFVRRSGCTHAQGFLLGRPVHGSEIAR 631


>gi|299530543|ref|ZP_07043963.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
 gi|298721519|gb|EFI62456.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           S44]
          Length = 748

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 138/734 (18%), Positives = 300/734 (40%), Gaps = 75/734 (10%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL----------------- 320
           W   +          +  L   +     +  S   + L+ + +                 
Sbjct: 6   WLGCLWMWVLGAAMSLVWLLMPAMDDMDLALSGGVMLLSLLCMGLAKARQWVWAVSCFVW 65

Query: 321 ---YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL------ 371
                +   ++H    Y  AV+  PAW+ + +W  G   A+T    + I+  AL      
Sbjct: 66  GNWLLSLLWVWHMGGLYGPAVMAFPAWLAVALWVQGTRAALTMLGLSSIVVAALWWLAPH 125

Query: 372 -------------------VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE------- 405
                              + G++++V++I       +      SQ + +  E       
Sbjct: 126 IGTPFAALSAAEHMLAMVHLLGMMMLVLIICLQARASLGRRVQKSQEMLAALEVSQNELR 185

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +   AV  + + +   D     +          G A   + G     +  +   DR + +
Sbjct: 186 KFYRAVEQNPESIVITDPELKVIYVNEAFLLRSGYAREQVIGQSTELVSTMG-MDRSHRQ 244

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L           + E   R +  +     + + P+    G+++ Y+ +  D++E+  +
Sbjct: 245 RALKQLAKG--TLWRGEMTNRTSKGEALRESVLVTPIRTPQGEVVNYVELKRDLSERVLA 302

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I    + D+LTG+PNR S    L  +   +    +    ++++D+D++   NDV G+
Sbjct: 303 ERRIHDLVYLDSLTGLPNRHSLTLHLREL---ALVRQDASHGLLLLDVDRFSVFNDVHGM 359

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKS 640
              D+++ ++  R+ E+L     +AR++   F I+    +        ++  +A  ++K+
Sbjct: 360 QHSDELVQAMGARLVEVLPDDAWIARVAAAEFAIVFDGLHKHAEGVEEQLLLYAQTLKKA 419

Query: 641 IAMPINLLE--REITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  P +L        V+  IG A    +     S ++L+ A +A++ AK  G   V  F 
Sbjct: 420 LQKPFSLNSWVETEFVSCCIGGAVLEPAIKGGNSHDVLRFASVALHEAKLGGPGSVVLFE 479

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +       I  DL   + + EL L             VG EAL++W HP+WG +S 
Sbjct: 480 PRMAQDVYRRVRIARDLYHGISDGELRLYLQSQTDAR-GRCVGAEALVRWQHPEWGLVSP 538

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I  +  ++L +    +   R       + + +N++++    ++    +
Sbjct: 539 GEFIPVAEESELIVRLGDWVLRQACMLLA--RPVMAERGLRLSVNVSAQQFAHDDFMATL 596

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T  +  ++ L  +E  ++ + +++R  +  LR +GI ++LDDFGT  S +  L 
Sbjct: 597 DKVLRETGANARQLTLEITEGTLLRDLDQARRRMLALRGLGIEISLDDFGTGYSSMYSLQ 656

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           ++P   +K + S ++GS   EK  A++ +++ +A+ ++  ++A+ +       +LT+   
Sbjct: 657 HLPIQELKIDRSFVSGSHRSEKDAALVEAMLLVARRLQLRVVAEGVELSEQALQLTQWNP 716

Query: 933 DYI-QDSHVASPLG 945
           D + Q   +  P+ 
Sbjct: 717 DIVLQGMLLGMPMP 730


>gi|264679460|ref|YP_003279367.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262209973|gb|ACY34071.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 750

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 138/734 (18%), Positives = 301/734 (41%), Gaps = 75/734 (10%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL----------------- 320
           W   +          +  L   +     +  S   + L+ + +                 
Sbjct: 8   WLGCLWMWVLGAAMSLVWLLMPAMDDMDLALSGGVMLLSLLCMGLAKARQWVWAVSCFVW 67

Query: 321 ---YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL------ 371
                +   ++H    Y  AV+  PAW+ + +W  G   A+T    + I+  AL      
Sbjct: 68  GNWLLSLLWVWHMGGLYGPAVMAFPAWLAVALWVQGTRAALTMLGLSSIVVAALWWLAPH 127

Query: 372 -------------------VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE------- 405
                              + G++++V++I       +      SQ + +  E       
Sbjct: 128 IGTPFAALSAAEHLLAMVHLLGMMMLVLIICLQARASLGRRVQKSQEMLAALEASQNELR 187

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +   AV  + + +   D     +          G A   + G     +  +   DR + +
Sbjct: 188 KFYRAVEQNPESIVITDPELKVIYVNEAFLLRSGYAREQVLGQSTELVSTMG-MDRSHRQ 246

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L           + E   R +  +     + + P+    G+++ Y+ +  D++E+  +
Sbjct: 247 RALKQLAKG--TLWRGEMTNRTSKGEALRESVLVTPIRTPQGEVVNYVELKRDLSERVLA 304

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I    + D+LTG+PNR S    L  +   +    +    ++++D+D++   NDV G+
Sbjct: 305 ERRIHDLVYLDSLTGLPNRHSLTLHLREL---ALVRQDASHGLLLLDVDRFSVFNDVHGM 361

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADFAIAMRKS 640
              D+++ ++  R+ E+L     +AR++   F I+    +        ++  +A  ++K+
Sbjct: 362 QHSDELVQAMGARLVEVLPDDAWIARVAAAEFAIVFDGLHKHAEGVEEQLLLYAQTLKKA 421

Query: 641 IAMPINLLE--REITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  P +L        V+  IG A    +     S ++L+ A +A++ AK  G   V  F 
Sbjct: 422 LQKPFSLNSWVETEFVSCCIGGAVLEPAIKGGNSHDVLRFASVALHEAKLGGPGSVVLFE 481

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               +       I  DL   + + EL L       +     VG EAL++W HP+WG +S 
Sbjct: 482 PRMAQDVYRRVRIARDLYHGISDGELRLYLQSQTDVR-GRCVGAEALVRWQHPEWGLVSP 540

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +I  +  ++L +    +   R       + + +N++++    ++    +
Sbjct: 541 GEFIPVAEESELIVRLGDWVLRQACMLLA--RPVMAERGLRLSVNVSAQQFAHDDFMATL 598

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T  +  ++ L  +E  ++ + +++R  +  LR +GI ++LDDFGT  S +  L 
Sbjct: 599 DKVLRETGANARQLTLEITEGTLLRDLDQARRRMLALRGLGIEISLDDFGTGYSSMYSLQ 658

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           ++P   +K + S ++GS   EK  A++ +++ +A+ ++  ++A+ +       +LT+   
Sbjct: 659 HLPIQELKIDRSFVSGSHRSEKDAALVEAMLLVARRLQLRVVAEGVELSEQALQLTQWNP 718

Query: 933 DYI-QDSHVASPLG 945
           D + Q   +  P+ 
Sbjct: 719 DIVLQGMLLGMPMP 732


>gi|167648448|ref|YP_001686111.1| diguanylate cyclase/phosphodiesterase [Caulobacter sp. K31]
 gi|167350878|gb|ABZ73613.1| diguanylate cyclase/phosphodiesterase [Caulobacter sp. K31]
          Length = 555

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 136/555 (24%), Positives = 247/555 (44%), Gaps = 36/555 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   +W W+   DR+      A  LGL   +       +       DR     IL 
Sbjct: 19  ALGAAEVALWLWEPEIDRLRVN-GAARALGLGPLAPDCSSAAFRALTLPQDRAQAEDILK 77

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             V      +    R+R       W     R +   +G  +R  G+         + E  
Sbjct: 78  --VREPGSEIMARLRMR-GGGTCIW-----RGVWLEDG--VRAAGV--------AAPEVK 119

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              + +D+LTG+ +R+SF+ R    L      +     ++V D+D+ +++N+ LG    D
Sbjct: 120 FAASERDSLTGLMDRKSFIARARERLARPGMHE-----LVVADLDRLRRLNEALGHERAD 174

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL +L  R+        +L R+  + F ++           + A  +R ++  P+ +  
Sbjct: 175 LVLAALGSRLAAAFPSEALLGRIGEDEFAVLCDPAG-----FEPAELLRNALEQPLRVAG 229

Query: 650 REITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
            +I  T SIG  S         ++E+L+ AELA+  A   G     ++  S       R+
Sbjct: 230 FDIHPTLSIGAVSAEGGEDAPEAAELLRRAELAVEAAASGGRGGAAAYGRSMETDGLSRL 289

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A+   E+   + P++RL    + G EAL +W HP+ G +   EF+ + EE+ 
Sbjct: 290 ALEADLRGAIARGEIRPYFQPVVRLSTGALSGFEALARWIHPRRGMLPPDEFLPLVEEMG 349

Query: 766 MIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYS 824
           ++  +   M+   AR + +WRD       + + +N+++ ++    L   ++ ++ +    
Sbjct: 350 LMSELGEHMMRTSARQLAAWRDTHPAVGALTVSVNLSTGEIDRPGLVHDVRQVLKEHNLP 409

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +KL  +ES +M +PER+ ++L  LR  G  L LDDFGT  S LSYL  +PFDT+K +
Sbjct: 410 RGALKLEVTESDIMRDPERAAVILRTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKID 469

Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +   GS      I+RS++ + ++++  ++A+ +      + L  +GCDY Q    A 
Sbjct: 470 RYFVRTMGSNAGSAKIVRSVVKLGQDLDLEVVAEGVENAEMARALQALGCDYGQGFGYAP 529

Query: 943 PLGFNSILKLLKERF 957
            L        L E +
Sbjct: 530 ALSPQEAEVYLNEAY 544


>gi|238063226|ref|ZP_04607935.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885037|gb|EEP73865.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 790

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/452 (23%), Positives = 202/452 (44%), Gaps = 22/452 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D LTG+ NR+  L  L        T       ++ +D+D +K +ND+ 
Sbjct: 290 EREAHFRELAHTDPLTGLANRRGLLRALHQA-----TGSGDPCVLLGLDLDGFKNVNDMR 344

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD+VL  + RR+   L+  D+ ARL G+ F +++            A  +   +  
Sbjct: 345 GHDVGDEVLAEVGRRLRGNLRPGDLAARLGGDEFAVLVPGC--PADAGRVAERLLGVLGR 402

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P +     + ++ SIG A       T   +L++A+LA+ +AK RG N +E +  +  +  
Sbjct: 403 PYDQPGGPVFLSVSIGVAGQPEEPDT-ELLLRHADLALRYAKQRGKNRIEHYDGAYDKLL 461

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    ++ +L  A+E  EL LV+ P+  L     VG EAL++W HP+ GN+   EF+ +A
Sbjct: 462 RRRTTLEHELRGAIERGELRLVFQPVASLPSVRPVGAEALLRWQHPELGNVRPDEFIPLA 521

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  MI  +  ++L +    +  W    +   +++ +N++ ++L        +   +   
Sbjct: 522 EECGMIAKLGAWVLHQACYQLSRWLADGHD--VWVSVNVSPRELHAPAYVVQVADALRAH 579

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R+ L  +E  V  + +     L  LR+ G+ + LDDFG   S L  L  +P D +
Sbjct: 580 HVPPQRLVLEVTEHAVATDLDELIRRLTALRRTGVRIALDDFGAGYSSLGQLRRLPIDIL 639

Query: 882 KFNGSLMTGSTEKRIA---------ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           K +  L+      R A         ++  ++ +   +   +IA+ +    ++  +   GC
Sbjct: 640 KIDHGLVAEHEPVRPAGADGPPFAPMVDIVMRLGHQLGLEVIAEGVTNPTELAAVVAAGC 699

Query: 933 DYIQDSHVASPLGFNSILKLLKER-FPLVKNT 963
            + Q +     +    +  +L+    P  + +
Sbjct: 700 RFGQGALFGWGVPAEHLEAMLEAATSPGARPS 731


>gi|90020539|ref|YP_526366.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950139|gb|ABD80154.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 693

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/441 (24%), Positives = 220/441 (49%), Gaps = 9/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+  + +   A  D LTG+PNR    D +      +    +    V ++D+D +K +N
Sbjct: 252 DLKRLSDDLKYRALHDTLTGLPNRSLLEDEIIRAAAAADRKGHY-FAVFMMDLDDFKVVN 310

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  +  R+   L+  D + R  G+ F  ++   N+ + +   A  + K 
Sbjct: 311 DSFGHDFGDQLLKQIAARLQNNLRGEDRVYRYGGDEFVAVVEGLNSMIDVETIAKGILKE 370

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +   + L+ RE+TV+ S+G + +     T SE++ NA++AMY AK +G N    +     
Sbjct: 371 LNNDLELMGRELTVSVSVGASVYPKHGRTLSELVHNADVAMYAAKDKGKNSFVIYHDDIE 430

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWGNISSSE 756
            ++     I ++L  A+ N+EL + Y P +++     ++VG EAL++W HP+ G +   E
Sbjct: 431 ENESHTDWIIKELPKAMSNNELLVYYQPNVKVEKGMYQLVGAEALVRWRHPEKGVLMPQE 490

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AEE  +I  ++ ++L         W D+    PI + +N+ ++      + E +++
Sbjct: 491 FVAHAEEYSLITQLDFYVLHSACVQARVWCDKG--IPIPVAVNMCAEHFKSYRVVERIKS 548

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +    P  + L   +S  M +   +  ++  L  +G+ + LD++G   + ++YL  I
Sbjct: 549 ILDEVGLPPHLLCLELRDSSDMRDCFEANKIMASLHDLGVKIALDNYGIGSTSINYLRTI 608

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S++     +EK   +++ ++ +A+++   ++A+ +  E  +  L  +GCD 
Sbjct: 609 PLDYLKLDKSIVRDVNLSEKDKNLIKGMVDLARDLNIGLVAEGVEDEDQVTSLAGIGCDT 668

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q  +   P      ++ ++E
Sbjct: 669 MQGFYFCEPRDLAGFVQWVQE 689


>gi|34558378|ref|NP_908193.1| hypothetical protein WS2095 [Wolinella succinogenes DSM 1740]
 gi|34484097|emb|CAE11093.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 847

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 197/443 (44%), Gaps = 22/443 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ + +   A+ D LTG+ NR +    L                ++++D D +K++ND L
Sbjct: 414 KAQKRLDFMAYHDTLTGLNNRAALSLELHRF-----ETHRTPYALILMDADNFKQVNDTL 468

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD V+++ T+R+  +      L R+SG+ F  +L    N   +  FA  + ++ + 
Sbjct: 469 GHQFGDQVIIAATQRLASIGFEGVKLFRVSGDEFIALLPHAQNEE-VKRFAKEVIQAFSK 527

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P+ +    +    S+G A      +   E+L  A++AMYH+K      +  F        
Sbjct: 528 PLIVEGHLVYFAFSLGSALCPQDGVRKDEILTKADVAMYHSKTHQKGTLTLFEDHLLERI 587

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             +  +++ L  A+E  E  L Y P + L      G EAL++W++P+ G I    F+ I 
Sbjct: 588 RQKQRLEKHLKGALERGEFTLHYQPQLHLPSGTFWGFEALLRWNNPELGPIPPDCFIPIL 647

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +  ++L+       S        P  + +NI+S  L  N+  E + + + + 
Sbjct: 648 EENHQIIQVGTWVLDEACAFAASLPLGTEERPPCVCVNISSHQLFHNDFEEMVLSTLKRH 707

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R+++  +ESV + +    +  L RLR  GI + LDDFGT  S LSYL  +P  T+
Sbjct: 708 QLPPERLEIEITESVFIDSLGLVKERLERLRSEGIRVALDDFGTGYSSLSYLQALPITTL 767

Query: 882 KFNGSLMTGSTEKRIAILRSIIP--------MAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           K + S +           +SI          + K +   I+A+ +  +  +  L    CD
Sbjct: 768 KIDKSFIDEIPS------QSIQQGIISAIISIGKLMNLEIVAEGVETKEQLDHLALHFCD 821

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            IQ    A PL   ++   +  +
Sbjct: 822 RIQGYLYAKPLPPLALKDFISTK 844


>gi|170724662|ref|YP_001758688.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169810009|gb|ACA84593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella woodyi ATCC 51908]
          Length = 870

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/573 (20%), Positives = 233/573 (40%), Gaps = 19/573 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +I            IF   ER  + +    + V   D     V   P    +L +     
Sbjct: 290 LIVMADRVNTLLARIFQQKERAKITLESIAEAVILTDTHAKVVYLNPQAERMLEIKEAKA 349

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     +  +   D+     +L+      +  +  +   R        M   +  + N 
Sbjct: 350 IGAK---IDTLLKADKTIKSALLNVMGSQVQQTILNKHMFRT--GNAKVMERSVSSLLNH 404

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             +++  + +  DIT+++K    +   A  D +T + NR++F +RLT   + +       
Sbjct: 405 QQEVVGSVIVLRDITQEEKLKRQLRVRANFDPITSLLNRRAFEERLTHFSENAH-----S 459

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +   D++++K IND  G + GD +L  + + I   L   D+LARL G+ FG+ + +++
Sbjct: 460 LAICYFDLEQFKLINDSCGHSAGDQMLAMVAKAIQSCLNKEDLLARLGGDEFGLAIRNQS 519

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                      + +     ++       V  S+G A   +  I S E++K+A++A   AK
Sbjct: 520 AVEVAQIVKRVISRVSLQVLHHHACHYRVGVSVGIAIARAPYIASKELVKDADIACLAAK 579

Query: 686 HRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEA 740
            +G N +  +      S            +  A+E++EL L Y  I  + +      +E 
Sbjct: 580 RKGSNQIHFYDDKDKESVYQRNAPMWAVRIGQAIEHNELLLYYQEIKGMGEGVNRQRMEI 639

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++   P    ++ ++F+  AE   ++  ++  ++ +    +    D  +     I IN+
Sbjct: 640 LLRVQEPCGRILAPAQFIEAAERFKLMNEVDKEVIRKTFLWLSLHEDIWDDH--CISINL 697

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L    + E +     +       I    +E+  + N  R+  ++  LRK+G S  L
Sbjct: 698 SGNSLGAEGMVEYIAKQYERFEIPSQCICFEITETSAIQNRNRAMDMINHLRKLGFSFAL 757

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDI 918
           DDFG+  +   YL  +P D VK +G  +          AI++SI  +   +    +A+ +
Sbjct: 758 DDFGSGFASYGYLKELPVDYVKIDGCFVKNLANNAKYFAIVKSIHDVCCAMGIETVAEFV 817

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +  I +L ++G +Y Q   +  P   N+ ++
Sbjct: 818 ENQDIIDKLEKIGINYAQGYAIGRPKPLNNYVQ 850


>gi|323499107|ref|ZP_08104085.1| GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
 gi|323315740|gb|EGA68773.1| GGDEF domain-containing protein [Vibrio sinaloensis DSM 21326]
          Length = 823

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 221/438 (50%), Gaps = 8/438 (1%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D  + +++ + +   A  D LTG+PNR    + +   +  S+ D+  +  VM +D+D +K
Sbjct: 385 DFNQLQQTKDKLEHMALHDELTGLPNRSLLHEHIAQGVKTSS-DNCQQLAVMFVDLDDFK 443

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND+ G + GD +L  + ++    L+  + +AR  G+ F       NN  +       +
Sbjct: 444 KVNDLYGHSAGDRLLSEIGKKFEAFLEPHEFVARFGGDEFIFCFPCLNNLAETESKVDQI 503

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESF 695
           +        +  + +  + SIG + + +      +++  A++ +Y +K   +G       
Sbjct: 504 KNVFKQHFVIDNKVLFASCSIGVSMFPTDGHEPEDLISKADIVLYKSKARQKGDVLFFDS 563

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +++       +++ +L  AVE  EL +VY P I   + ++ G+E+L++W +P+ G++S  
Sbjct: 564 KINQQVQYDFLLERELRGAVERGELSVVYQPQIDAKNGKLYGVESLLRWHNPQLGHVSPL 623

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AEE+ +I  +  F+LER   +I           + + INI+   L +      + 
Sbjct: 624 EFISLAEEIGLINQLGEFVLERSCEEISQ---HFPDSDLMLSINISPMQLTNEMFVPQLL 680

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A I++   +  RI L  +E+V++ +  +   ++ +L+++G +++LDDFGT  S LSYL  
Sbjct: 681 AAIARHNLTSKRITLEITENVLINDLPKVTPIITQLKELGFTISLDDFGTGYSSLSYLSN 740

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +   +     +E+  +++++I+ +A++    ++A+ +      + L   GCD
Sbjct: 741 LSLDELKIDRVFIDKMLTSEQSDSLVKAIMAIAQSANMRVVAEGVETLAQKEVLINYGCD 800

Query: 934 YIQDSHVASPLGFNSILK 951
            +Q   +  P+    +++
Sbjct: 801 ILQGYLIEKPIAAELLVE 818


>gi|90415226|ref|ZP_01223160.1| hypothetical protein GB2207_07921 [marine gamma proteobacterium
           HTCC2207]
 gi|90332549|gb|EAS47719.1| hypothetical protein GB2207_07921 [marine gamma proteobacterium
           HTCC2207]
          Length = 857

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 100/571 (17%), Positives = 232/571 (40%), Gaps = 16/571 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ + + GE   L      D V   D     +   P    +LGL          +
Sbjct: 292 QVSQQAEELINRGELYDLTSKHIADAVVLVDAEGFVLEMNPIAEQLLGLKLDKSKPVQIH 351

Query: 452 WLPYIHIND----RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +  +   D        +  L+  +            ++        + +   P+ ++ G
Sbjct: 352 TVMPLANEDTGIAETPVQDALNKALNVES---NQSLLLKVRGAAPVSVSVSAFPLRDAMG 408

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I++ + I   ++E ++    +   +  D+LTG+PNR S    +   ++++   +     
Sbjct: 409 RIVKCLVIFRLLSEARRVSSRLQWQSMHDSLTGLPNRASLSKHIQKAVEIA-RHEGATHA 467

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+  +  IND  G   GD++L    + +  L    DI AR+  + F +++   N  
Sbjct: 468 LLYIDLYNFSVINDTSGHTAGDELLKEFAQLLIRLAGPSDITARIGNDEFALLIHRVNYD 527

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                    + +   + +      + + ASIG     ++ ++  +++ +A  +   A+ +
Sbjct: 528 KSRMLAERILAEVKELRVPWEGEVLKIGASIGAILIDNTALSDIDLMISAGSSCATARDK 587

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIV--GLEALI 742
           G N +     +   + R  +   +     A++     L   PI+ L          E L+
Sbjct: 588 GRNKIHFQSFNEEVARRRSLATSMPKIVSALDEDRFTLFAQPIVPLQGSATTAKCYEVLV 647

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        +  SEF+  AE   +I  ++ ++     + +   + Q +  P+ + +N++ 
Sbjct: 648 RMRESDGTILPPSEFIPGAEHFSLIDDLDKWVFSHSLKFLQRLQAQGSALPL-LSVNLSG 706

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    S T  SP + +   +E+  + + + ++ L+  LR +G+S+ LDD
Sbjct: 707 TTVGDENAIDYILRGFSDTGISPKQFQFEITETAAVKHLQEAKRLISTLRSVGVSIALDD 766

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG+  S  +YL  +P D +K + S +     ++   +++ +I  +   +  T +A+ +  
Sbjct: 767 FGSGLSSFAYLKELPIDCLKIDSSFIHTMENSDVDYSVVSTINHLGHIMGVTTVAEGVEN 826

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           E  ++ L ++G DY+Q      P   + I +
Sbjct: 827 ENQLRLLKKIGVDYLQGFLFQHPQPLDQIRR 857


>gi|110679010|ref|YP_682017.1| GGDEF/EAL domain-containing protein [Roseobacter denitrificans OCh
           114]
 gi|109455126|gb|ABG31331.1| GGDEF/EAL domain protein [Roseobacter denitrificans OCh 114]
          Length = 619

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/593 (20%), Positives = 240/593 (40%), Gaps = 60/593 (10%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           E  +LA+  S D           +  +      I G  +    G     L  I  +    
Sbjct: 16  EGLALALASSEDGAVM------EIQWSNKAFTRITGYTAAEALGERGTIL--IGPDMGQG 67

Query: 464 F-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
               I++  + +       + R    + + +W  +    +S +      ++    ++ E+
Sbjct: 68  VHLYIIEKLMKWEN--FSTKSRNNRKNGEVYWQRMSWVHLSEAETGNHWWLCSIIELEEE 125

Query: 523 KKSLEGILCN-------------------------------------AFQDNLTGIPNRQ 545
             +    +                                       A +D LTG+ NR+
Sbjct: 126 HAAPASQVLQDPAVADQAAFAKALEQVERLEKENTRLHQLAKSVAKDANEDALTGLSNRR 185

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F   L T ++           V+ ID+D++K +ND LG   GD +LVS+   + +L   
Sbjct: 186 HFEVELKTWIENLKKH-GTEFAVIYIDLDRFKFVNDTLGHDAGDRLLVSVADMLRDLTGD 244

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D++ARL G+ F I+     ++L I+  A  +  ++  P     +    +AS+G A    
Sbjct: 245 CDLVARLGGDEFVILRPLAQSALNISSLADDIVGTMQAPFACDGKSTACSASVGVAIANK 304

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723
                 +++ +A+ A+YHAK +G      F             +  DL LA E SE    
Sbjct: 305 HMEHPEQVVADADEALYHAKSQGKGRWSFFTEEMHAKSIATKKLASDLLLACERSEFIPY 364

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P+I     +IV  E L++W HP  G ++ + F+  A  + ++K I+  +   +   + 
Sbjct: 365 FQPLIDAQSGKIVSAEMLVRWAHPTQGILAPAAFLDTAANMGILKRIDEIVFASVHGALS 424

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-E 842
            + D     P  + +N+++  L D      +++    +  +P R+ +   ESV +    +
Sbjct: 425 RFDDAGVDLP-RVAVNVSAARLADPTFIHDIKS----SGINPQRLTIEILESVYLDRMGD 479

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILR 900
             R  +  L ++G+++ LDDFGT  + +S L  I    +K +   +    E      ++ 
Sbjct: 480 VVRWTIDELDELGVTIALDDFGTGHASVSGLLKIRPAILKVDRHFIQPIVEQANTRPLVA 539

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           SI+ + K++   ++A+ +  E   + +T MGCDY+Q  +   P+  + +   L
Sbjct: 540 SIVGIGKSLGMRVVAEGVETEEHARLVTEMGCDYLQGFYFGKPMSESDLRNRL 592


>gi|91779300|ref|YP_554508.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91691960|gb|ABE35158.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 463

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 190/422 (45%), Gaps = 7/422 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT + NR    + L  +L         R  V+ ID+D + KIND+ G  +GD +L   
Sbjct: 32  DSLTRLHNRVYIAECLQQLLKSPRA---ARVGVLFIDLDGFSKINDIGGYDLGDSILRDA 88

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L+    +L R+  + F I+     N L +  FA  +    A+P  +   E  + 
Sbjct: 89  ASRLAGLMDQQGLLGRIGSDGFLIVADDHGNPLTLVAFAQRILDLFAVPFEVAGAEYYLG 148

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            SIG A        +S ++++A  AM  AK  G     +  +      R  I+  L  A 
Sbjct: 149 VSIGMARSVHDTRDASALIRDAGSAMRRAKQSGRAEFFNKDMQDQLQRRFRIETLLRHAR 208

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              EL LVY PI+     E VG EAL++W   + G+++ +EF+ +AEE  ++++I  ++L
Sbjct: 209 AAGELKLVYQPIVDSASGETVGAEALLRWTSGELGDVAPAEFIPVAEEAGLMESIGDWVL 268

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E+       WR     P + + +NI+     +  L   + A + ++    S ++L  +E 
Sbjct: 269 EQACAQAGQWRWSFA-PHVAVSVNISPLQF-NEHLVRHVAACLERSGLDASALQLEITER 326

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
            +M +       +  L K+G+ L++DDFGT  + LSYL       +K + S +      R
Sbjct: 327 GLMPDEPAVSATVAALVKLGVRLSIDDFGTGYASLSYLKRFALHNLKIDRSFIQSLPHDR 386

Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI  +++ MA  +  T  A+ +        L  MGCD +Q    + P         L
Sbjct: 387 ESVAITHAVVTMAHALGMTATAEGVETREQATALFEMGCDMLQGYLFSRPASPAEFADAL 446

Query: 954 KE 955
            +
Sbjct: 447 SD 448


>gi|150390686|ref|YP_001320735.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens
           QYMF]
 gi|149950548|gb|ABR49076.1| diguanylate cyclase/phosphodiesterase [Alkaliphilus metalliredigens
           QYMF]
          Length = 716

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 117/440 (26%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + KK    I   A+ D+LT +PNR+  +++L      +         +M++D+D +K+IN
Sbjct: 275 QLKKQEAYIEHIAYHDDLTNLPNRRMLVEKLELEFTHNR-----SGAIMLLDLDNFKEIN 329

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL  +T  +  +     +++RL G+ F I++  E + LKI ++A  +   
Sbjct: 330 DTLGHVYGDKVLKKVTEALLHIKGENLVVSRLGGDEFLILIKEEEDILKIENYARKVIDL 389

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
            +  + + + E+ +T SIG A + S+  + S+++ NA++AMY  K  G N+   F     
Sbjct: 390 FSNKLLVEDDEVYLTCSIGIALYPSNSNSVSQLIMNADMAMYGVKGFGKNNYMFFNEEML 449

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++++ ++  L +A+++    L+Y P I     EIVG EAL++        +S ++F+
Sbjct: 450 TNLNEKIEVENKLRIALKDDGFKLLYQPQIDTYTGEIVGFEALLRLKKSN---LSPAQFI 506

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  MI  I  ++ E + + +  W+ +       I IN ++K L D    + +QA +
Sbjct: 507 PVAEETGMIIEIGRWVTEAVIKQVALWKKKELSLK-PIAINFSAKQLNDLSYIDFLQAKL 565

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +     + +++  +E + +   E++   + +++ +G+ + LDDFGT  S LSYL ++P 
Sbjct: 566 KENHVEANYLEIEITEGLFLEKIEKTIEFVNQIKALGVKMALDDFGTGYSSLSYLTFLPV 625

Query: 879 DTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + SL       K   ++  II +A ++   ++A+ I  E    +L     +YIQ 
Sbjct: 626 DKIKLDKSLSDKYLETKNFKMIGGIIALAHSLNLDVVAEGIEEEAQYIQLKAARSNYIQG 685

Query: 938 SHVASPLGFNSILKLLKERF 957
              + PL    + K+  + F
Sbjct: 686 YLFSRPLEVKEVEKIYNDNF 705


>gi|126175876|ref|YP_001052025.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS155]
 gi|125999081|gb|ABN63156.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS155]
          Length = 650

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 197/417 (47%), Gaps = 6/417 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR + ++ L+T+L+     +    +V+ + +  +K IND  G  +GD +L  
Sbjct: 222 YDPLTGLPNRINLINSLSTMLEEVNRKEK--ISVLYLGLRNFKSINDSYGYLIGDKILTI 279

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++R+         +AR++G  F II   + ++ +       +      P  + +  IT+
Sbjct: 280 LSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITI 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCL 713
            +S+G A      I ++ +L+ A  AM  +K  G  H    + +    +    ++  L  
Sbjct: 340 PSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVD 399

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +EL L Y P I L +++++G EAL++W +P  GN++   F+ +AE    I  I  F
Sbjct: 400 ALNKNELSLHYQPFINLKNQKVIGAEALLRWHNPILGNVTPDRFIALAERNGQIIDIGNF 459

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         W  +       I INI+   + +    E +  L++     P+ ++L  +
Sbjct: 460 VLHTALAQAAKWCREL-DQEFKIAINISPLQMRNPRFSEHIADLLTLYQLPPTALELEIT 518

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E ++M +   +   + +L+++GI ++LDDFGT  S LSYL    FDT+K +   +     
Sbjct: 519 EGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEE 578

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            E+   + ++II + K +   +IA+ +        +    CD  Q      P+  + 
Sbjct: 579 NEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHE 635


>gi|307944962|ref|ZP_07660299.1| ggdef domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307771886|gb|EFO31110.1| ggdef domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 684

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 103/444 (23%), Positives = 198/444 (44%), Gaps = 10/444 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           ++    D   ++ +   I      D LTG+ NR      + T+L  + +  +    V+  
Sbjct: 232 FMAYMIDAKTEEATDGRIHRIFEHDALTGLLNRSGMNSAVATVLQRATSSPSA-AAVISF 290

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            +D++  I D  G    D +L  + + +   L   + L R+    F ++     N+ ++ 
Sbjct: 291 SLDRFLDIRDAHGQKATDSMLRHVAKLVSGCLGENESLGRVGDCEFLVLASDVYNNREVN 350

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +   +          + V A+ G+A + S+   + E++  AE AM HA   G   
Sbjct: 351 ALCARIEAVLGTSFRWGGGVLPVRAAFGYAFFPSNAREAGELIDKAEQAMKHACRSGPGT 410

Query: 692 VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F+ S      +R  +  DL  A E  EL L Y     +   E+ G E L++W H K 
Sbjct: 411 VAPFKESLGKTAKERGALSIDLSHAEERGELELYYQIQNNVNTREVTGAEVLLRWKHDKL 470

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +F+ IAEE  +I A   ++L    ++  SW       P+ I +N++S  L  + 
Sbjct: 471 GMVPPYKFIPIAEETGLINAFGPWILHTACKEAASW-----DMPLKIAVNVSSVQLSKDG 525

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +  +   +   P+R++L  +ES ++ +   +  ++  L+ +G+ + +DDFGT  S 
Sbjct: 526 FADIVARVFRSSGLDPARLELEITESGLLDDRNHAMQVIQDLKSLGVGIAMDDFGTGYSS 585

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L   PFD +K +   +    + +   AI+RS I +A++++  ++A+ +  E  ++ L
Sbjct: 586 LATLQMFPFDKIKIDREFVKDLGKNKHSAAIIRSTIILAESLDIPVLAEGVETEEQLQFL 645

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
              GC   Q      P+    + K
Sbjct: 646 ASEGCGEAQGYLFGRPMPVEELRK 669


>gi|329848059|ref|ZP_08263087.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328843122|gb|EGF92691.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 651

 Score =  408 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 208/446 (46%), Gaps = 10/446 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  +     A  D LT +PNR+ F   L      +         V +ID+D +K +N
Sbjct: 207 ETRRLSDENFRIANLDALTDLPNRRWFFAELERRHGEATAA-GAGFAVGIIDLDGFKPVN 265

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL  + RR+ +  +    LARL G+ FG I+  + +  ++  F  A+ ++
Sbjct: 266 DTYGHMTGDKVLSEVGRRLSKAGRDGVTLARLGGDEFGFIMGDDPSEERLKTFGAALIET 325

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P  +      + ASIG A +  S  T   + + A+ A+YHAK     HV  F     
Sbjct: 326 VRLPFAIGGSHAALGASIGVARYPDSADTPESLFERADYALYHAKRNQRGHVVVFSNRHE 385

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              R    I++ L  A   +E+ LVY PI+          EAL +W+ P  G +S  +F+
Sbjct: 386 EQIRSHGVIEQALQAANFEAEMSLVYQPIVDTRTGRASTFEALARWNSPSLGAVSPGDFI 445

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    ++ + L +L +  R    W +      + I  N+++ D+   E    + ALI
Sbjct: 446 PVAERTGQVRDLTLALLGKALRAAAQWPET-----VRISFNLSAHDISQAESVIQIIALI 500

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++  SP RI    +E+ +  + +++R  +   R +G+ ++LDDFGT  S LS++  +  
Sbjct: 501 NRSGVSPKRIDFEITETSISYDFQQARAAVIAFRALGLGISLDDFGTGYSSLSHVHRLAL 560

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +    +      I++S+  +  ++    + + +     ++ L  +GC Y+Q
Sbjct: 561 DKIKVDRSFVADVTTNPVSHKIIKSLSALCADMGLACVLEGVETAAQLEVLQALGCIYVQ 620

Query: 937 DSHVASPLGFNSILKLLKERFPLVKN 962
             + A P+    ++  L+    L   
Sbjct: 621 GYYFARPMPEQDVVHYLESEHKLPSR 646


>gi|154252023|ref|YP_001412847.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155973|gb|ABS63190.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Parvibaculum lavamentivorans DS-1]
          Length = 583

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/542 (20%), Positives = 226/542 (41%), Gaps = 15/542 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           AV   GD  + W I  D +   P    +LG++  S     R++   +  +    + +I  
Sbjct: 31  AVKAVGDAAYRWSIDDDLLYWGPGSEILLGISEISKISTHRDFTSRLVTDGPSRYESICR 90

Query: 470 SFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           S             E+R+R       W+  R R     +G     +G+   I E+ K  E
Sbjct: 91  SRESDAGSGVPYNLEYRIRDDFGGMRWVEDRGRWFGGPDGAPAFAVGVLRAIDERHKREE 150

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            ++  +  D LTG+ NR    + LT  +  +          +++ +D    +ND  G  V
Sbjct: 151 ELVRLSTYDELTGLLNRVRLKEALTDAMIAAQR-GRQNSAFLLVAVDNLALVNDAFGFDV 209

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D+V+V +  R+  L +  D L R +GN+FG++L + N     A     + +     +  
Sbjct: 210 ADEVIVCVGERLRGLARRGDSLGRYAGNKFGLVLPNCNEERLSAVCDRLLAEVRDKVVMT 269

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-- 705
               + VT S G  +      +  + L  AE A+  AK R  +    +  S  R      
Sbjct: 270 ARGPVAVTVSAGSIALPGHASSVDQALARAEEALVSAKQRLRDSHVVYAPSREREKTRLR 329

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              + ++L  A+ +  + + Y PI+     E +  E L++ + P     ++  F+ +AE+
Sbjct: 330 NINVADELITALNDKRIRIAYQPIVDATTCEPMMYECLVRMEQPDGNIAAAGHFVPVAEK 389

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L +I  I+  ++E     + +       P + + +N++ +   D    + + + + +  +
Sbjct: 390 LGLIGLIDYRVMELAVETLRA------RPDVKLSLNVSGRTTGDRLWRDTLASHLDRDKH 443

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R+ +  +E+V +         +   R++G  + +DDFG   +    L  +  D VK 
Sbjct: 444 LAERLVIEITETVAIHEVSELTDFVATFRELGCQIAIDDFGAGYTSFRNLKTLDVDMVKI 503

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +GS +            +R+++ +A+N     +A+ +  E ++  L  +G +Y+Q  ++ 
Sbjct: 504 DGSFVIDLATNPDNQFFVRTLVDLARNFNLPTVAEWVSNEEEVVMLRNLGVEYLQGFYLG 563

Query: 942 SP 943
            P
Sbjct: 564 EP 565


>gi|217971884|ref|YP_002356635.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217497019|gb|ACK45212.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS223]
          Length = 646

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 196/420 (46%), Gaps = 6/420 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR + ++ L+T+L+     +    +V+ + +  +K IND  G  +GD +L  
Sbjct: 222 YDPLTGLPNRINLINSLSTMLEEVNRKEK--ISVLYLGLRNFKSINDSYGYLIGDKILTI 279

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++R+         +AR++G  F II   + ++ +       +      P  + +  IT+
Sbjct: 280 LSQRLQHYADENTFIARIAGAEFVIIQAHKPSNNETNKLINKVLSCCNTPFGVADFVITI 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCL 713
            +S+G A      I ++ +L+ A  AM  +K  G  H    + +    +    ++  L  
Sbjct: 340 PSSMGIAQAPIDGIDAAILLQKAGAAMTISKADGSTHSFFNQDTQAALNLRYQLESHLVD 399

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+  +EL L Y P I L  ++++G EAL++W +P  GN++   F+ +AE    I  I  F
Sbjct: 400 ALNKNELSLHYQPFINLKTQKVIGAEALLRWHNPILGNVAPDRFIALAERNGQIIDIGNF 459

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         W  +       I INI+   + +    E +  L++     P+ + L  +
Sbjct: 460 VLHTALAQAAKWCREL-DREFKIAINISPLQMRNPRFSEHIADLLTLYQLPPTALDLEIT 518

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E ++M +   +   + +L+++GI ++LDDFGT  S LSYL    FDT+K +   +     
Sbjct: 519 EGMLMQDEHIAHNAIQKLQELGIRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFINKLEE 578

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E+   + ++II + K +   +IA+ +        +    CD  Q      P+  +   +
Sbjct: 579 NEQDRELTKAIIAIGKKLNLVVIAEGVETLEQDAFIRHEECDLGQGYLYGKPITAHEFEQ 638


>gi|27367010|ref|NP_762537.1| EAL domain-containing protein [Vibrio vulnificus CMCP6]
 gi|27358578|gb|AAO07527.1|AE016810_30 FOG: EAL domain protein [Vibrio vulnificus CMCP6]
          Length = 591

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 203/433 (46%), Gaps = 9/433 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
               ++  D LT +PNR++F   L  +  L+         ++ IDID +K+IN+  G   
Sbjct: 162 KYREDSRTDYLTQLPNRRAFYSDLNQVESLAQQ--GRNCALLKIDIDAFKEINESFGHEQ 219

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIADFAIAMRKSIAMPIN 646
            D +L   +RR+ +       + R+ G+ F +++  +++   ++      +++++     
Sbjct: 220 ADLLLKRFSRRLRKNTLGFGQVYRMEGDEFAVLVYEKHSINDEVDALLDKLKRALTAAFE 279

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDR 704
           L      ++ + G A +  S       L+N+++A   AK RG   V  +  +       +
Sbjct: 280 LERGSYQISYATGIALFNESMTNLDIWLRNSDIAAQKAKTRGRGQVRWYDEALLDETIRQ 339

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+ +L  A+E  +  LVY P + +   EI G EALI+W HP+ G I+  EF+ IAE+ 
Sbjct: 340 HQIERELDKAIELKQFSLVYQPKVSITTGEITGAEALIRWQHPELGTITPFEFITIAEKT 399

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  I  +++    +    W D      I + +N+++     +++   ++  ++++   
Sbjct: 400 KQIIPIGRWVILEACQQAKKWLDLGY--KIPVSVNVSTVQFAHDDIELQVRTALAESHLP 457

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S ++L  +E+V+M  P++   +   LR  G+++ +DDFG   S L+YL  +P D +K +
Sbjct: 458 ASYLQLEITETVLMKEPKKLIEICHNLRCEGVTVAIDDFGIAYSSLNYLKQLPIDVLKID 517

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +           ++R+I+ +  N++  +IA+ +  E     L    CD  Q    + 
Sbjct: 518 KAFIDDCVDNHHDHMLVRTIVQLGHNMDKKVIAEGVETEEQRLLLVSEQCDEFQGYLYSK 577

Query: 943 PLGFNSILKLLKE 955
           PL      + L +
Sbjct: 578 PLDVEEFNRQLLQ 590


>gi|127514257|ref|YP_001095454.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
 gi|126639552|gb|ABO25195.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
          Length = 643

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/420 (26%), Positives = 203/420 (48%), Gaps = 8/420 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F+++L+  L      D L   V+   +  +K IN+  G  VGD VL  
Sbjct: 223 HDPLTGLANRLGFVNQLSQQLSQP---DELSTYVIYFGLRNFKSINESYGYVVGDKVLQL 279

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            ++RI  +L    + AR++G  F I    +N          ++ ++  +P  L E  I +
Sbjct: 280 FSQRIKRILDKDTLFARIAGAEFVIAHRGKNPLE--LPLIDSIIQTANIPFALAEFSINI 337

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCL 713
              IG A   +    +SE+++ A  AM  +K     +    + +    +R  +++  L  
Sbjct: 338 PCCIGVAVAPTDAQEASELMQKAGAAMSISKAEATPYSFFNKHTQTNIERRCLLESHLVD 397

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+++ EL L Y P+  L  + ++G EAL++W  P+ G++   +F+ +AE    I AI  F
Sbjct: 398 ALKHQELSLHYQPLFSLQHKRVIGAEALLRWHSPQLGDVPPDQFISLAEHNGQIIAIGNF 457

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         WR Q    P  + INI+     D +  + +  L+S      S ++L  +
Sbjct: 458 VLHTAIEQAAKWRSQDPSRPFRVAINISPLQFRDTDFADYIANLLSLYRLPASSLELEIT 517

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E V++ + + ++ ++G+L+ +G+ ++LDDFGT  S LSYL    FDT+K +   +T    
Sbjct: 518 EGVLLQDEQLAQHIIGQLQALGVRISLDDFGTGYSSLSYLQKYSFDTLKIDRCFITNLEK 577

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E+   + R+II M K +   +IA+ +  +     + +  CD+ Q      P+   +  +
Sbjct: 578 NEQDRELTRAIIAMGKKLTLNVIAEGVETQAQDAFIRQEECDFGQGYLYGRPVDAQTFER 637


>gi|86356496|ref|YP_468388.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280598|gb|ABC89661.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 469

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 219/436 (50%), Gaps = 10/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A+ D LTG+ NR    D++   +      D    T+ + ++D +K IND+ G 
Sbjct: 29  HNELQAMAYTDPLTGLGNRNRMRDKVLQ-ISAERASDPAPFTIGIANLDSFKPINDLFGS 87

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD++L  +  R+   +    ++ R  G+ F  +L           F   +R+ ++ P 
Sbjct: 88  SAGDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPY 147

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           +L +R + ++AS GFA +  +     E+LK+AE A+Y +K RG   +  +     +  + 
Sbjct: 148 DLGDRNVRLSASFGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKR 207

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S   F+ +AEE
Sbjct: 208 ATQLEQALRNAIISDAIDVHFQPIVSLANNQVVGFEALARWNDPDLGFVSPGVFVPLAEE 267

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I A++  +L + A   +SW  +     +F+  N++S  L+D      + +++ +  +
Sbjct: 268 RGFIDALSEALLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSGSILSILGRVGF 322

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R++L  +E+ VMG+ + +  ++  LR  G+ ++LDDFGT  S L  L    FD +K 
Sbjct: 323 DPHRLELEITETAVMGSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKI 382

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + ++     R +  I+++I+ + + +E  ++A+ I    +  +L  +GC   Q  H  
Sbjct: 383 DRAFVSRINSDRASEHIIKAILSLCEGLELEVVAEGIEDYAEAVKLRTLGCGMGQGYHFG 442

Query: 942 SPLGFNSILKLLKERF 957
            P    + L+ L E +
Sbjct: 443 RPADGIATLRFLHENY 458


>gi|71281070|ref|YP_267881.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71146810|gb|AAZ27283.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 637

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/434 (25%), Positives = 205/434 (47%), Gaps = 11/434 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I   +  D+LTG+ NR +FL  L T L  S    N    ++ ID+D +KKIND +
Sbjct: 202 QRTRKIYELSNLDSLTGLYNRTAFLKHLKTALASS----NKPFALLFIDLDGFKKINDSI 257

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L     R+ +      +L R  G+ F ++L    + +     +  + + ++ 
Sbjct: 258 GHQAGDQILKKSAERLKQWSFDTKLLCRWGGDEFLMVLAD-TDEVSAVGVSKQLIEVLSA 316

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P N     ++V A+IG A +     T   ++++A++AMY+ K +  + V  F        
Sbjct: 317 PHNTEHSVLSVGATIGIALYPEHAKTEDRLIQSADMAMYYQKKQARSTVGVFSKQMDKLY 376

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S  + +K +L  ++E  +L LV+ PII   ++E+V  EAL++W      NI   +F+ IA
Sbjct: 377 SYELRLKNELTQSIEKEQLRLVFQPIISSKNDEVVAFEALLRWQL-DEENIPPDDFISIA 435

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++L         W  +    P+ + +N++   L D      +   +S +
Sbjct: 436 EQYGLIHKIGAWVLRNACLQASQWSSE---QPLSVCVNVSVIQLQDENFIAIVDDALSNS 492

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + +  +ESV   +       + RL+   I +++DDFGT  S LS +  +  + V
Sbjct: 493 TLPGDLLHIEITESVFAADTSIISNQIKRLQARKIKVSIDDFGTGYSSLSVIQDLAINMV 552

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +        AI+ +++ +A +++  +IA+ +  E   +EL ++G  ++Q  H +
Sbjct: 553 KIDRSFVNKMNTNGHAIISAVMHIASSLDFLVIAEGVETEAQARELQKLGVHFLQGYHYS 612

Query: 942 SPLGFNSILKLLKE 955
            P+    I   L  
Sbjct: 613 KPIEIEDIDSYLTN 626


>gi|312196081|ref|YP_004016142.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311227417|gb|ADP80272.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 899

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 208/429 (48%), Gaps = 11/429 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +D LTG+  R++FLD    ++        +     ++++++D++++IN VLG   GD +L
Sbjct: 305 RDELTGLAGRRAFLDAAARVVGGGEHRVREVAPAALVLVNLDRFREINSVLGHQSGDRLL 364

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           V +  R+ ELL+  D+LAR+ G+ F ++L       +    A  +R ++  P+ L +  +
Sbjct: 365 VVVASRLRELLRPSDLLARIGGDEFAVLLRD-AGPGRAELLASRLRDALRAPVLLADLPV 423

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR----SDRVMIK 708
               S+G A   +    ++E+L++AE AMY AK          R           R+ ++
Sbjct: 424 QTEVSVGIAYAPAHGRGAAELLRHAEAAMYEAKLTRVGQRTYQRNRHTAAAPGRARLRLR 483

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E++++ L Y P        + G+EAL++W HP+ G      F+   E+  ++ 
Sbjct: 484 AELRSALEDNQIELRYQPKADPRTGRVTGVEALVRWQHPREGLRGPGVFLPEMEQAGLMP 543

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A+   +LE    D  SWR       + + +N+    + D      ++  +++    PS +
Sbjct: 544 ALTRRVLELALADCASWRGAGAD--LSVSVNVPPSVIDDTGFAAVVEDALTRHQLEPSAL 601

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E  ++   E++R  L  LR +G+ ++LDD+GT    L+YL  +P D VK +   +
Sbjct: 602 VVEVTEEALITVREQARRTLAELRALGVRVSLDDYGTGFCSLAYLRELPADEVKLDQMFL 661

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+RS + +A  ++  I+A+ +  +     L    CD +Q   V+ PL  
Sbjct: 662 RDMHRDPSAAEIVRSTVALAHALDLKIVAEGVETKGAWLALAGWRCDEVQGYFVSPPLAG 721

Query: 947 NSILKLLKE 955
             ++  L++
Sbjct: 722 GRVVSWLED 730


>gi|198283523|ref|YP_002219844.1| diguanylate cyclase/phosphodiesterase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248044|gb|ACH83637.1| diguanylate cyclase/phosphodiesterase [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 879

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 219/438 (50%), Gaps = 9/438 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                +D LT +PNR  F+D L    + +   + L   V ++D+D +K++ND LG   GD
Sbjct: 321 RNQFLRDPLTALPNRFLFMDFLENARNQTLRHERL-LGVAILDLDGFKQVNDRLGHGAGD 379

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL ++ +R+   L+  DILARL G+ FG+IL        +   +  +  ++  P+ +  
Sbjct: 380 QVLQAVVQRLQVQLRAGDILARLGGDEFGLILPDLERLDDLDGVSERLLAALREPLEIDG 439

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
              +VT S+G   +      +S ++++A++A+Y AK  G +  +   ++   + R     
Sbjct: 440 EAASVTGSLGITLFPLDDSDASTLIRHADMALYAAKDAGRDQFQLHSLALDEAMRTEAGT 499

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++ + L L Y P++      ++G+EALI+  HP+ G I  + F    + + + 
Sbjct: 500 RALLEQALQENRLVLYYQPVVS-SAGAVIGVEALIRLQHPERGLIPPAAFFSALDHVRLA 558

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPS 826
           + I  F+L         W++  +  P+ + +NI+++ LLD    E +Q +++K     P 
Sbjct: 559 RPIGRFVLNVALHQAALWQEAGH--PLRVSVNISTRHLLDARFLEDLQEMLAKYPGLRPE 616

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  +ES  + +   ++ LL    ++G+ + LDDFGT  + L+YL  +P D++K + S
Sbjct: 617 LVEIEITESAPLRDMLEAQRLLVACHRLGVRVALDDFGTGNASLTYLQRLPADSIKIDQS 676

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +       K +AI+ ++I  ++ +   +IA+ +     +  L + GC+++Q    + P+
Sbjct: 677 FVRDVIDDPKDLAIVTAVITASRMLGMNVIAEGVETADHVDLLVKTGCNHLQGYFFSKPI 736

Query: 945 GFNSILKLLKERFPLVKN 962
               +   +    P  + 
Sbjct: 737 PAEDVPAWVAHFRPAPRT 754


>gi|71726101|gb|AAZ39224.1| conserved hypothetical protein [Janthinobacterium lividum]
          Length = 753

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/506 (23%), Positives = 226/506 (44%), Gaps = 23/506 (4%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVR------AADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                 ++  +  RR    +++         + D   + ++ R  P+S  +  +L     
Sbjct: 254 PRVMAAIEHTLAQRRNVYAHDYATLYFAGKASRDAAAYLVLPR--PLSAIDESLLEVFCS 311

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              +  +  + +  +   AF D L+ +PNR   ++ L   L   A DD    T+ ++D+D
Sbjct: 312 NVAVGLDNVELVSHLHNAAFYDQLSKLPNRTRLVEILDATLAGPARDD---ATLSLVDLD 368

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            + + ND LG   GD +LV++  R+   L     +ARL G+ F ++  S           
Sbjct: 369 HFAETNDALGHQFGDMLLVAVAGRLQTQLGPHLTVARLGGDIFCVLGDSSQ------VNP 422

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P  +  +++ ++A++G         T ++ LK+A++A+  AK +       
Sbjct: 423 SKILALFQAPFCIDGQDVQLSATLGLVRLGEHAGTGADALKDADIALKRAKSQQRAGHFY 482

Query: 695 FRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S      +RV +   L  A    +L++VY P I L     VG EAL++W  P    I
Sbjct: 483 FSRSMGIEIRERVRMMHALRTAFSQDQLFVVYQPQIDLTTRRPVGAEALLRWQTPDGKFI 542

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ IAE   +I  +  ++L    R+++  R+Q +     + +N++          E
Sbjct: 543 SPDRFIPIAEYSGIIIDLGEWVLRTACRELVLLREQGHR-NFVMSVNVSQVQFRHPLFLE 601

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++A + +T   P  I+L  +ES+ M  P+    +L ++++ G+S+ +DDFGT  S LSY
Sbjct: 602 MLRAALEETQAPPEFIELEITESMAMEEPDLLIKMLWQIKQTGVSIAIDDFGTGFSSLSY 661

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + + +T  T      +I   +I + +N+   +IA+ +  E   + L  +
Sbjct: 662 LQRLQVDRLKIDRAFVTEITGSARGSSIAEMVIQLGRNLGLAVIAEGVEDERQAQILQAL 721

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GC   Q    A P+   ++   L   
Sbjct: 722 GCPMAQGFLFARPMTATALGTWLNNE 747


>gi|330950048|gb|EGH50308.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 784

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 213/430 (49%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + I+    I + + +  
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSSIAAERA-----LALLSLSIENLATIGESVSVEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  + +R+   L+  D +ARL  N F ++L + +++  +   A A+++ ++ P  +
Sbjct: 407 VEQLLRHVGQRLQGNLRAGDTVARLGTNEFLLLLDNTSSAGAV-GMADALQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              E+ +   IG   +     ++ E+L  A +A    A   G   +           ++ 
Sbjct: 466 DNHELELECCIGITVYPEHGDSAQELLNRAAIARKDAAFIPGRLQIYQDGRDLAHQRQIT 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N E  L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAAQNGEFTLHYQPKLDIRQGYVRQAEALLRWAHPQFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 IYLLTNWVIEDAIRQLAEWRQRGLV--LQVSVNISADDLLGDDLVGYVMKLLKQYALPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALIVLHRLRDCGISLSVDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|163748644|ref|ZP_02155897.1| sensory box protein [Shewanella benthica KT99]
 gi|161331754|gb|EDQ02558.1| sensory box protein [Shewanella benthica KT99]
          Length = 859

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 114/569 (20%), Positives = 222/569 (39%), Gaps = 19/569 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++            IF   ER    +    + V   DI    V   P    +LG+ S + 
Sbjct: 289 LVVMAGRVNSLLAKIFQLKERSKTTLESIAEAVIFTDIEAKVVYLNPQAERLLGVNSTAA 348

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     +  +   D+     +        +  L  +  ++        M   I  + N 
Sbjct: 349 IGGS---VDVLLKTDKSINEDLFKFMASRAQDPLLSKLTLQGE--STRIMERSISNLLNH 403

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              +   + +  DIT+++     +   A  D +T + NR++F +RL        +     
Sbjct: 404 KQRVTGTVILLRDITQEELLKRKLHQRANFDPITSLLNRRAFEERLAAF-----SLGAQS 458

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +   D++++K IND  G + GD +L  + R +   L   ++LARL G+ FG+ +   +
Sbjct: 459 VAICYFDLEQFKLINDSCGHSAGDRMLAIVARAMQSCLTQDEMLARLGGDEFGLAIRDHS 518

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                      +       +        V  S G A   +  I++ E+LK+A++A   AK
Sbjct: 519 ALEVAQLAKRMVASVSMQVLRDNACHCKVGVSAGIAIARAPYISAKELLKDADIACLAAK 578

Query: 686 HRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEA 740
            +G N V  +                   +  A+E++EL L Y PI  +   +    +E 
Sbjct: 579 SKGSNQVHFYDDKDKDLTCQRNAPMWAVRIAQALEHNELLLYYQPIKGMGSGKHRQRIEI 638

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++   P    ++ ++F+  AE   ++  ++  ++ +    +    +        I IN+
Sbjct: 639 LLRIQEPSGRILAPAQFIAAAERFKLMNDVDKEVIRKTFLWLSLHEEIWGDH--CISINL 696

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L    + + +     +       I    +E+  + N  R+  +L  LRK+G S  L
Sbjct: 697 SGNSLGAEGMADYIIQQFERFAIPSECICFEITETSAIQNRNRAMDMLAYLRKLGFSFAL 756

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  +   YL  +P D VK +G  +       K  AI++SI  +   +    +A+ +
Sbjct: 757 DDFGSGFASYGYLKELPVDYVKIDGCFVKNLATNAKDYAIVKSIHDVCVVMGIETVAEFV 816

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             +  I +L  +G +Y Q   +  P   +
Sbjct: 817 ENQDIIDKLQEIGINYAQGYAIGRPQPLS 845


>gi|332140872|ref|YP_004426610.1| GGDEF/EAL domain protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550894|gb|AEA97612.1| GGDEF/EAL domain protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 684

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 210/439 (47%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +   + +D LT + NR  FL  L  ++D +   +N    V+ ID+D +K++N
Sbjct: 253 EVERRTAELYRLSNRDPLTDLLNRNGFLKHLNKLIDTTRALEN-SLAVLFIDLDGFKQVN 311

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD VL  + +R+       + L R  G+ F  ++    N       A AMR  
Sbjct: 312 DSLGHKIGDIVLAEIAKRLRNY-TEDNHLGRWGGDEFVAVIPY-ANVDTAKAVAHAMRSG 369

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           + +PI   + +IT+ A+IG A +     T+  +++ A+L MY  K +    +  F     
Sbjct: 370 VTVPIVANDNQITLDATIGIAMFPDHGDTALALIQQADLTMYDQKRKHRGSIGVFSEALH 429

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   + E L  A++  EL + Y PII +    +  +EAL++W       I  + F+
Sbjct: 430 KEIKIEQRLCERLRSAIDKGELAVHYQPIIDVSTNALSSVEALLRWT-CDNEKIPPTVFI 488

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   ++  I  ++L R   D+  W+       + I +N++   LLD+   + +  ++
Sbjct: 489 PLAERSGLMPEIGAWVLNRALIDLSHWQ---LNQELAISLNVSVAQLLDDSFFKSLDNVL 545

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T  SP R+ L  +ESV   +       +  L K  + +++DDFGT  S LS L  IPF
Sbjct: 546 LSTKVSPERLHLEVTESVFAIDKNVVSRRVSDLVKRNVKISIDDFGTGYSSLSRLQSIPF 605

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K + S +  S+E+   I+R+ + MAK      IA+ I  +   + L R+G DY+Q  
Sbjct: 606 DFIKIDRSFVQNSSEESDTIIRATLLMAKEFGCKTIAEGIETDEQRQHLARLGTDYLQGF 665

Query: 939 HVASPLGFNSILKLLKERF 957
           + A P+  +  +    E +
Sbjct: 666 YFAKPMNAHDFISWYNENY 684


>gi|113969004|ref|YP_732797.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-4]
 gi|114048851|ref|YP_739401.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-7]
 gi|113883688|gb|ABI37740.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-4]
 gi|113890293|gb|ABI44344.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-7]
          Length = 644

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 201/439 (45%), Gaps = 6/439 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I  +  +   +  +   D LTG+PNR + L+ L  +L+     +    +V  + +  
Sbjct: 203 IREIETRTTTESSLEYHKSYDPLTGLPNRLNLLNTLARMLEEINRKEK--ISVFYLGLRN 260

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  +GD +L  L++R+         +AR++G  F ++   + +  +      
Sbjct: 261 FKSINDSYGYLIGDKILTILSQRLQHCTDGHTFIARIAGAEFVLVQAHKPSQRETNKLLN 320

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +      P  + +  IT  +SIG A   S  I ++ +L+ A  AM  +K  G  +    
Sbjct: 321 QIINCCNAPFGIADFVITTPSSIGIAQAPSDGIDAAVLLQKAGAAMTISKAEGIPYSFFN 380

Query: 696 RVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           + +     +   ++  L  A++ +EL L Y P I L   +++G EAL++W +P  G +S 
Sbjct: 381 QDTQTALRQRYQLESRLVDALQKNELSLQYQPFIELKTHKVIGAEALLRWHNPVLGQVSP 440

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE    I  I  F+L    +    W  Q       I INI+   + +    E +
Sbjct: 441 DRFIALAERNGQIMEIGNFVLHSAIKQAADWC-QMLQRDFKIAINISPVQMRNPRFVEHI 499

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L++      + ++L  +E +++ +   +   + +L+++GI ++LDDFGT  S LSYL 
Sbjct: 500 AELLTLYQLPATALELEITEGMLLQDEHLAHKAIIQLQELGIRISLDDFGTGYSSLSYLQ 559

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              F+T+K +   ++   ++E+   + ++II + K ++  +IA+ +        +    C
Sbjct: 560 KYSFNTLKIDRCFISKLENSEQDRELTKAIIAIGKKLKLQVIAEGVENPNQDSFIRSEDC 619

Query: 933 DYIQDSHVASPLGFNSILK 951
           D  Q      P+      +
Sbjct: 620 DLGQGYLYGKPVTPEQFER 638


>gi|289642211|ref|ZP_06474361.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia
           symbiont of Datisca glomerata]
 gi|289507945|gb|EFD28894.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia
           symbiont of Datisca glomerata]
          Length = 935

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 118/504 (23%), Positives = 225/504 (44%), Gaps = 9/504 (1%)

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R +    +             R       W     + ++     + R +  A      
Sbjct: 373 RIREVSAPLLAGEEQIGVLTLGFRRP---TAWRRHEEQVLAAFTQTVSRALAHARLEAHA 429

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E    +A  D LTG+ NR+  + R    +   A        +++ID+D++K IND 
Sbjct: 430 RQVAEEQAHDAGHDWLTGLGNRRLLMARAAAEMRRQAETGR-SVALVMIDLDRFKIINDT 488

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG + GD VL ++  R+   ++  D++ARL G+ F +++   ++  +    A  +   + 
Sbjct: 489 LGHSAGDRVLQAVAERLRRGIRADDVVARLGGDEFAVLVTGIDDPAQAEATAAELADVLC 548

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-R 701
             + +    + V AS+G A       T  E+LK+A++AMY AKH           S    
Sbjct: 549 RDVVMDGIPLAVEASLGVACHPQDGSTIEELLKHADIAMYQAKHSHPRWRRFDAGSHDPS 608

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ +  +L  A+  +EL L Y P + L    I G+EAL++W HP+ G ++   F+   
Sbjct: 609 LERLALVAELRSAISGNELVLNYQPQVELRTGRISGVEALVRWKHPRRGMLTPEMFVPAI 668

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +++     +LE+       WR       I + +N+++++LL+ EL   +  L+ K 
Sbjct: 669 EQSGLVQDFTKAILEQALVACAGWRASGFD--ITVSVNLSARNLLNTELPGDVAKLLVKH 726

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +E+ +M +   +  LLG+LR+IG+ + +DDFGT  S L+ L     D V
Sbjct: 727 DVPAAALTLEITETAMMSDKRTAYRLLGKLREIGVRIAVDDFGTGFSSLTMLQERILDEV 786

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      +   AI+ + I +A      ++A+ +     +  L  + CD++Q  H
Sbjct: 787 KVDQSFVRKLLVEQGDAAIVSATIHLAHTHNLQVVAEGVETAELMAALAALRCDFVQGLH 846

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
             + +    +   L+      +  
Sbjct: 847 TGAAMPLPELTAYLRASESAPRQA 870


>gi|224373743|ref|YP_002608115.1| sensory box sensor/ggdef/eal domain protein [Nautilia profundicola
           AmH]
 gi|223588948|gb|ACM92684.1| sensory box sensor/ggdef/eal domain protein [Nautilia profundicola
           AmH]
          Length = 826

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/555 (22%), Positives = 228/555 (41%), Gaps = 36/555 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
              A+  +   V   D   + +     +  I G +   + G   R +    H +  + ++
Sbjct: 300 LQEALDKAYSWVVITDENANILYANKSVEDITGYSLFELLGKNPRIFKSGYHSD--EFYK 357

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + +         ++     +  +N   ++  +I P++  NG    YI +A DIT +K  
Sbjct: 358 RLWEKLTNNE--VVETILINKDKNNHIFYLKDKIVPITAPNGQ-KYYISLAIDITHEKTL 414

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +      D LT +PNR  F++ ++  +             ++ID+  +K  N + G 
Sbjct: 415 QNKLKK----DILTDLPNRNEFINLISNKI-----HPGESYACIIIDLRDFKIFNQLNGN 465

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD +L      I  +    DI+AR+ G+ F + +   +    I D    + K I    
Sbjct: 466 AAGDYLLRKFADFIKTVFYEEDIIARIGGDEFAVFIKYNS----INDLYSIIHKIIYKVK 521

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-- 703
           +L +    ++ +IG + +       +E+++ A LA+  AK +G    E F     +    
Sbjct: 522 HLEDFHNKISVNIGISLYPKDSENITELIEKAFLALEIAKEKGDFTYEFFNPQINQKIIE 581

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              IK+ +  A++N E    + P +     +IVG E L++  H       ++ F+  AE 
Sbjct: 582 YSDIKKLIVNAIKNEEFIYHFQPYVNTKTLKIVGAETLLRIKHSNKIIYPNA-FIDFAEN 640

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              IK I   M  +    +           I +  N++ K L D    E +   I K   
Sbjct: 641 SGYIKEIEKIMFPKYIEYLKEL-------NIPLSFNVSGKSLTDENHIEQLFGNIEKLP- 692

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               I +  +E  + GN E ++ +    ++    L++DDFGT  S L+YL  +P D +K 
Sbjct: 693 ----IIIELTEREIAGNIEYTKEIFRFFKEKKFKLSIDDFGTGYSSLTYLKDLPADYLKI 748

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +     +EK +AI+ +II  A       IA+ +  E  +K L  + CDY+Q  + A
Sbjct: 749 DMSFIKNIETSEKDLAIVETIINFAHKFNLKTIAEGVETEKQVKILKELNCDYLQGFYFA 808

Query: 942 SPLGFNSILKLLKER 956
            P+        L   
Sbjct: 809 KPMPLEEFKNFLNSH 823


>gi|21243539|ref|NP_643121.1| hypothetical protein XAC2812 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109104|gb|AAM37657.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 788

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/586 (18%), Positives = 219/586 (37%), Gaps = 15/586 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 202 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 261

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          +H  D           + + +     E R   AD   
Sbjct: 262 SMANVLLYRPEEL--QACTLAEVMHPEDIKLDS---RGMLDWPKLLQSGELRFVRADGGV 316

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 317 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 376

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 377 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFADVITMQLRSGDWLGRL 435

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M  ++  P +    R +T + S G           +
Sbjct: 436 GGDEFAILLAN-TDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCSFGVVEIRQGVGDLN 494

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
            ++  A+LA + AK  G N +  F  +     +          +  A+    L L    I
Sbjct: 495 ALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKI 554

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L D   +  E L++        ++  EF+   E   + + ++ ++LE +   + +   
Sbjct: 555 QVLNDPGRLQYEVLVRMRASDGRVLTPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPM 614

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 +   +N++++ +   +  + + AL  +      ++ +  +E+ V+G+ E ++  
Sbjct: 615 HVATLDL-CHVNLSAQSIAQPDFLDVVCALFERYPALVPKLCMEITETAVIGDLEHAQRF 673

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  +R  G  + LDDFG+  +   YL     D +K +   +          A + SI  +
Sbjct: 674 VQSVRAHGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQV 733

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +   ++A+ +  E DI  L   G   +Q   +  P     +L 
Sbjct: 734 GLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLH 779


>gi|318061959|ref|ZP_07980680.1| integral membrane phosphodiesterase [Streptomyces sp. SA3_actG]
          Length = 1296

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/823 (17%), Positives = 314/823 (38%), Gaps = 56/823 (6%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN- 213
           PG    F +  + P +  + +           +       +IG + L   +         
Sbjct: 128 PGLADLFFLLFAPPAIVGLLVLAKRPVTRAGWACLALDSWLIGGSLLTLSWSLALAHTTQ 187

Query: 214 -RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R   +          L Y  +D   +S ++ L        R     A+ +  +  L   
Sbjct: 188 FRGESVPRAAL----SLAYPLLDIALVSMVLALHFKRSSAGRFAINTAVGAFALTVLCDA 243

Query: 273 LHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           L  +   R   + G +  +G    ++L   + +      + A   + +          + 
Sbjct: 244 LFTSPLLRDSYRSGQLLDAGWFAGSLLLAYAPWVRSTRRAPAEEPVRTSPDARARTSTFA 303

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            +  Y  A +     +   +              +      +    V++ +++   ++  
Sbjct: 304 ALTPYLAAAVCTLGLLYSAVNA-----------PSVDRVVLITACTVVLALVLRQGIM-- 350

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           ++     +Q +    E     V GS D++            +P  + + G  + SM G  
Sbjct: 351 LVDNIALTQELAHKEEHFRSLVQGSSDVIMIVAPSGVLRYVSPAASGVYGREAESMLG-- 408

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                 IH  D       +  F+    G     + E R ++    +  +   +  +    
Sbjct: 409 CELASLIHPEDLGQVVHEIRRFLAADPGAEPTTRIECRFKSGCGDWLNVESTVNRLHG-- 466

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 I  + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +   
Sbjct: 467 ----GLILNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALK-GRRTGDTGV 521

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ + +
Sbjct: 522 AVLFIDLDGFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGS 581

Query: 627 ------SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   +I D A  +R ++++P  +  +E+ + ASIG A +  + + + E+L+NA+LA
Sbjct: 582 RDVAAREQQIKDLAERLRVALSLPYTIEGQEVRIAASIGVA-FAENGLGAGELLRNADLA 640

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G + VE +             +   L  A++  E  L++ P++ L    +  +
Sbjct: 641 MYRAKGLGKDRVELYVPQLQTEAARRTALAGRLRTALDEGEFALLHQPVVCLHTGAVDVV 700

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            A  +W   +    +  EF+    +     A+  ++L          R + +  P  + +
Sbjct: 701 TAEARWRSAQGILFTPEEFLRGPGDGERGGALGRWLLGEAVAQAAERRGEGHTTP--VSV 758

Query: 799 NIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNP----ERSRLLLGRLRK 853
            + ++ LLD       ++AL+++       +++    ++ + +P    E     L  LR+
Sbjct: 759 RLGARALLDRATPLTSVEALLTRYALPAGALQI----ALRLDDPRVPLEALERRLNVLRR 814

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ + LD FG   + +  L  +P D +  +  L+ G   + +   I   ++ +A ++  
Sbjct: 815 LGVRIGLDGFGAGHATIEALRRLPVDALTLDRGLVGGVVDSARHYKITAGVLRIATDLGL 874

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +A+ +     +  L  +GC + Q    + PL  + + + L 
Sbjct: 875 YTVAEGVDRAEQVTVLQALGCTHAQGLAFSGPLDEHRLRRALA 917


>gi|318077437|ref|ZP_07984769.1| integral membrane phosphodiesterase [Streptomyces sp. SA3_actF]
          Length = 1149

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/751 (18%), Positives = 298/751 (39%), Gaps = 50/751 (6%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN---RWHAK 281
           A + L Y  +D   +S ++ L        R     A+ +  +  L   L  +   R   +
Sbjct: 49  AALSLAYPLLDIALVSMVLALHFKRSSAGRFAINTAVGAFALTVLCDALFTSPLLRDSYR 108

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
            G +  +G    ++L   + +      + A   + +          +  +  Y  A +  
Sbjct: 109 SGQLLDAGWFAGSLLLAYAPWVRSTRRAPAEEPVRTSPDARARTSTFAALTPYLAAAVCT 168

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
              +   +              +      +    V++ +++   ++  ++     +Q + 
Sbjct: 169 LGLLYSAVNA-----------PSVDRVVLITACTVVLALVLRQGIM--LVDNIALTQELA 215

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              E     V GS D++            +P  + + G  + SM G        IH  D 
Sbjct: 216 HKEEHFRSLVQGSSDVIMIVAPSGVLRYVSPAASGVYGREAESMLG--CELASLIHPEDL 273

Query: 462 DNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 +  F+    G     + E R ++    +  +   +  +          I  + D
Sbjct: 274 GQVVHEIRRFLAADPGAEPTTRIECRFKSGCGDWLNVESTVNRLHG------GLILNSRD 327

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +TE+ +    +  NA  D LT +PNR  F  R+   L       +    V+ ID+D +K 
Sbjct: 328 VTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALK-GRRTGDTGVAVLFIDLDGFKG 386

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN------SLKIAD 632
           +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ + +        +I D
Sbjct: 387 VNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGSRDVAAREQQIKD 446

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +R ++++P  +  +E+ + ASIG A +  + + + E+L+NA+LAMY AK  G + V
Sbjct: 447 LAERLRVALSLPYTIEGQEVRIAASIGVA-FAENGLGAGELLRNADLAMYRAKGLGKDRV 505

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           E +             +   L  A++  E  L++ P++ L    +  + A  +W   +  
Sbjct: 506 ELYVPQLQTEAARRTALAGRLRTALDEGEFALLHQPVVCLHTGAVDVVTAEARWRSAQGI 565

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +  EF+    +     A+  ++L          R + +  P  + + + ++ LLD   
Sbjct: 566 LFTPEEFLRGPGDGERGGALGRWLLGEAVAQAAERRGEGHTTP--VSVRLGARALLDRAT 623

Query: 811 -CEGMQALISKTLYSPSRIKLSFSESVVMGNP----ERSRLLLGRLRKIGISLTLDDFGT 865
               ++AL+++       +++    ++ + +P    E     L  LR++G+ + LD FG 
Sbjct: 624 PLTSVEALLTRYALPAGALQI----ALRLDDPRVPLEALERRLNVLRRLGVRIGLDGFGA 679

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + +  L  +P D +  +  L+ G   + +   I   ++ +A ++    +A+ +     
Sbjct: 680 GHATIEALRRLPVDALTLDRGLVGGVVDSARHYKITAGVLRIATDLGLYTVAEGVDRAEQ 739

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  L  +GC + Q    + PL  + + + L 
Sbjct: 740 VTVLQALGCTHAQGLAFSGPLDEHRLRRALA 770


>gi|294625116|ref|ZP_06703761.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600580|gb|EFF44672.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 788

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/586 (18%), Positives = 219/586 (37%), Gaps = 15/586 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 202 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 261

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          IH  D           + + +     E R   AD   
Sbjct: 262 SMANVLLYRPEEL--QACTLAEVIHPEDIKLDS---RGMLDWPKLLQSGELRFVRADGGV 316

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 317 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 376

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 377 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFADVITMQLRSGDWLGRL 435

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M  ++  P +    R +T + S G           +
Sbjct: 436 GGDEFAILLAN-TDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCSFGVVEIRQGVSDLN 494

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
            ++  A+LA + AK  G N +  F  +     +          +  A+    L L    I
Sbjct: 495 ALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKI 554

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L D   +  E L++        +S  EF+   E   + + ++ ++LE +   + +   
Sbjct: 555 QVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPM 614

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 +   +N++++ +   +  + + AL  +      ++ +  +E+ V+G+ E ++  
Sbjct: 615 HVATLDL-CHVNLSAQSIAQPDFLDVVCALFERYPALVPKLCMEITETAVIGDLEHAQRF 673

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  +R  G  + LDDFG+  +   YL     D +K +   +          A + SI  +
Sbjct: 674 VQSVRTRGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQV 733

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +   ++A+ +  E DI  L   G   +Q   +  P     +L 
Sbjct: 734 GLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLH 779


>gi|91778695|ref|YP_553903.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91691355|gb|ABE34553.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 667

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 209/435 (48%), Gaps = 10/435 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++     L  A  D LTG+PNR+ F   L  +L  ++        V V+D+D +K IN
Sbjct: 221 ETERLSMENLRLANLDGLTGLPNRRRFFSDLDKLLVTASAT-RTGMAVGVLDLDGFKPIN 279

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD +L  + RR+  L     I AR+ G+ FG++   + +  ++ +   A+  +
Sbjct: 280 DLYGHHFGDRLLEEVGRRLASLSSPGLIAARVGGDEFGLLFGGDVSQARLRELGAAICAT 339

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
           +  P  L +    +TAS+G A +  +  T+ E+ + A+ A+  AK   RG   + S    
Sbjct: 340 LQRPYELTDVTARLTASLGIAVFPEAGTTAVELSERADYALSFAKNHRRGATAIFSREHE 399

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I++ L LA    E+ + + PI  +  + IV  EAL +W  P  G I   +F+
Sbjct: 400 TQIRRCNEIEQALKLADFEREISVFFQPIFDISSKGIVAFEALARWTSPSLGTIPPVDFL 459

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+  MI ++   +L +      +W      P + I  N++++D+   E  +G+    
Sbjct: 460 AAAEKTDMIHSMTHVLLRKALEAAATWP-----PQMRIAFNLSARDVSSPEAIDGVIRTA 514

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +  +P RI    +E+ ++ N   +   LG L+K+G  ++LDDFGT  S LSY+  +P 
Sbjct: 515 LASGVAPERINFEVTETALIKNVSSACETLGALKKLGAEISLDDFGTGYSSLSYVHRLPI 574

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +          A+++SI+ + +N+  T + + +     +  L  +GC  +Q
Sbjct: 575 DKLKVDRSFIADIVDDAAARAVVKSIVDLCRNLGLTCVVEGVETASQVSVLRGLGCTVMQ 634

Query: 937 DSHVASPLGFNSILK 951
                 P+    +L+
Sbjct: 635 GYFFGKPVAGADVLQ 649


>gi|229527179|ref|ZP_04416573.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229335410|gb|EEO00893.1| sensory box/GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 768

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 217/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|333024253|ref|ZP_08452317.1| putative integral membrane phosphodiesterase [Streptomyces sp.
           Tu6071]
 gi|332744105|gb|EGJ74546.1| putative integral membrane phosphodiesterase [Streptomyces sp.
           Tu6071]
          Length = 1286

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/823 (17%), Positives = 314/823 (38%), Gaps = 56/823 (6%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN- 213
           PG    F +  + P +  + +           +       +IG + L   +         
Sbjct: 128 PGLADLFFLLFAPPAIVGLLVLAKRPVTRAGWACLALDSWLIGGSLLTLSWSLALAHTTQ 187

Query: 214 -RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R   +          L Y  +D   +S ++ L        R     A+ +  +  L   
Sbjct: 188 FRGESVPRAAL----SLAYPLLDIALVSMVLALHFKRSSAGRFAINTAVGAFALTVLCDA 243

Query: 273 LHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           L  +   R   + G +  +G    ++L   + +      + A   + +          + 
Sbjct: 244 LFTSPLLRDSYRSGQLLDAGWFAGSLLLAYAPWVRSTRRAPAEEPVRTSPDARARTSTFA 303

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            +  Y  A +     +   +              +      +    V++ +++   ++  
Sbjct: 304 ALTPYLAAAVCTLGLLYSAVNA-----------PSVDRVVLITACTVVLALVLRQGIM-- 350

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           ++     +Q +    E     V GS D++            +P  + + G  + SM G  
Sbjct: 351 LVDNIALTQELAHKEEHFRSLVQGSSDVIMIVAPSGVLRYVSPAASGVYGREAESMLG-- 408

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                 IH  D       +  F+    G     + E R ++    +  +   +  +    
Sbjct: 409 CELASLIHPEDLGQVVHEIRRFLAADPGAEPTTRIECRFKSGCGDWLNVESTVNRLHG-- 466

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 I  + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +   
Sbjct: 467 ----GLILNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALK-GRRTGDTGV 521

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ + +
Sbjct: 522 AVLFIDLDGFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGS 581

Query: 627 ------SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   +I D A  +R ++++P  +  +E+ + ASIG A +  + + + E+L+NA+LA
Sbjct: 582 RDVAAREQQIKDLAERLRVALSLPYTIEGQEVRIAASIGVA-FAENGLGAGELLRNADLA 640

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G + VE +             +   L  A++  E  L++ P++ L    +  +
Sbjct: 641 MYRAKGLGKDRVELYVPQLQTEAARRTALAGRLRTALDEGEFALLHQPVVCLHTGAVDVV 700

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            A  +W   +    +  EF+    +     A+  ++L          R + +  P  + +
Sbjct: 701 TAEARWRSAQGILFTPEEFLRGPGDGERGGALGRWLLGEAVAQAAERRGEGHTTP--VSV 758

Query: 799 NIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNP----ERSRLLLGRLRK 853
            + ++ LLD       ++AL+++       +++    ++ + +P    E     L  LR+
Sbjct: 759 RLGARALLDRATPLTSVEALLTRYALPAGALQI----ALRLDDPRVPLEALERRLNVLRR 814

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+ + LD FG   + +  L  +P D +  +  L+ G   + +   I   ++ +A ++  
Sbjct: 815 LGVRIGLDGFGAGHATIEALRRLPVDALTLDRGLVGGVVDSARHYKITAGVLRIATDLGL 874

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +A+ +     +  L  +GC + Q    + PL  + + + L 
Sbjct: 875 YTVAEGVDRAEQVTVLQALGCTHAQGLAFSGPLDEHRLRRALA 917


>gi|153829088|ref|ZP_01981755.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875416|gb|EDL73551.1| sensory box/GGDEF family protein [Vibrio cholerae 623-39]
          Length = 768

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 217/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|153214637|ref|ZP_01949513.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
 gi|124115243|gb|EAY34063.1| sensory box/GGDEF family protein [Vibrio cholerae 1587]
          Length = 768

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 217/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|71905700|ref|YP_283287.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71845321|gb|AAZ44817.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 783

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 117/600 (19%), Positives = 241/600 (40%), Gaps = 39/600 (6%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLAT-GYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           ++DI Q       +   +      +Q   A      + + ++  R    +      +   
Sbjct: 199 NDDIGQVISAFNGMAKTLDRRVRDLQEAEARQRALLETVDAERSRLDALLSAMRLGLVFV 258

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D         P  A++  ++       +             + R  LD+ +         
Sbjct: 259 DQDERICYLNPAFASLWSVSLDGHLANLP----------LADLRRWLDAVLTNGGQS--- 305

Query: 482 EFRVRAADNQF--------HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             ++   D             +  +   +++++G  L  + I  D+T +++  E +L  A
Sbjct: 306 --QLFRGDGTSVELALHEGRVITQQGIAVTSASGSELGRLWIFEDVTNERQLAEHLLFMA 363

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+ NR  F   L  ++     D      V+  DID++K IND  G  VGD+VLV
Sbjct: 364 ERDPLTGLANRARFAAELDRLVSRFQRDATQSGAVLYFDIDEFKTINDTFGHRVGDNVLV 423

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
                + +L++  ++LARL G+ F I+     +   +   A  + K++         +  
Sbjct: 424 RTADVVSKLVRTGELLARLGGDEFAIVAPG-ADLDGVQAMAERVVKALTGLSFEFDGKRF 482

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IK 708
            +T S+G A       ++ E++ +A+ AMY AK  G N    +R     S  ++      
Sbjct: 483 GLTISLGIALLPEHAASAEELVAHADAAMYQAKRSGKNCWRIYRPDLDESSHMLSQLGWN 542

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK--WGNISSSEFMLIAEELCM 766
           + +  A+  + L L +  +       I   EAL++   P      +    F+  AE    
Sbjct: 543 DKIQAALNENRLVLHFQGVHVTATRAISHYEALVRMIDPDNPDELLQPGSFIPAAERTGR 602

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I+ +++      +             + IN++++   D  L   +  L+++   +P 
Sbjct: 603 IVDIDRWVIGTAIHKLAGMPSLPA-----LAINVSARSFDDPTLARTISDLLTEFHVNPQ 657

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ +  +E+  + N   S   +  LR++G ++ LDDFG   S  +YL ++  D +K +G 
Sbjct: 658 RLIIELTETAALANIRDSERFIDDLRRLGCTVCLDDFGVGFSSFAYLKHLSADVLKIDGM 717

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +       +    +R+I+ +A+ +    +A+ +     +  L  +G DY Q  +++ P+
Sbjct: 718 FIRNLVSNREDQVFVRAIVEVARGLGKKTVAEFVGDAPTLALLGELGVDYAQGYYLSFPI 777


>gi|209548104|ref|YP_002280021.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533860|gb|ACI53795.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 454

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 218/434 (50%), Gaps = 10/434 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LTG+ NR    D++   +      D    T+ + ++D +K IND+ G A 
Sbjct: 16  ELQAMAYTDPLTGLGNRNRMRDKVLQ-ISSERASDPAPFTIGIANLDSFKPINDLFGSAA 74

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L  +  R+   +    ++ R  G+ F  +L           F   +R+ ++ P +L
Sbjct: 75  GDEILCQVAHRLRACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPYDL 134

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-- 705
            +R + ++AS+GFA +  +     E+LK+AE A+Y +K RG   +  +     +  +   
Sbjct: 135 GDRNVRLSASLGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKRAT 194

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S   F+ +AEE  
Sbjct: 195 QLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPGVFVPLAEERG 254

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I A++  +L + A   +SW  +     +F+  N++S  L+D      + +++ +  + P
Sbjct: 255 FIDALSEALLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSSSVLSILGRVGFDP 309

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +E+ VM + + +  ++  LR  G+ ++LDDFGT  S L  L    FD +K + 
Sbjct: 310 HRLELEITETAVMSSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKIDR 369

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + ++     R +  I+++I+ M   +E  ++A+ I    +  +L  +GC   Q  H   P
Sbjct: 370 AFVSRINSDRASEHIIKAILTMCDGLELEVVAEGIEDYAEAVKLRMLGCGMGQGYHFGRP 429

Query: 944 LGFNSILKLLKERF 957
               + L+ L E +
Sbjct: 430 ADGIATLRFLHENY 443


>gi|190573463|ref|YP_001971308.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011385|emb|CAQ45000.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 807

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/607 (17%), Positives = 214/607 (35%), Gaps = 23/607 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
               +        +++ A +    L V+ I    +      G     +     R   A  
Sbjct: 196 AQAFSQALLRMATMVRIATLVVGGLSVLAISLMAVALARRVGK---DLTEHESRFRAAFY 252

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY---IHINDRDNFRTILD 469
            +   +   D     +     +A IL      +       L     + I+          
Sbjct: 253 QANVGMLKLDTDGKVIEANQAMADILDYRRDVLLQMSLGDLLMEGELVIDGVGR------ 306

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             + + R     E R    D    W       + ++ G +     I  D+++       I
Sbjct: 307 --IDWDRQLRPSELRFCRRDGSLVWGRWSGTGVRSAGGGLS-VFAIIEDVSQNHALAREI 363

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
             +A  D LTG+ NR+     L   L    +D      +  I++D +K +ND  G A GD
Sbjct: 364 EHHASHDPLTGLINRREIERLLERALLQVRSDGGTH-ALCYINLDHFKLVNDSFGHAAGD 422

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L S    +   ++  D + RL  + F + L               +R        + E
Sbjct: 423 QMLRSFADYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRVLQRVIRNLGQATFPISE 482

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
               ++ SIG    ++     + ++  A+ A Y AK  G N V  F  +    +    + 
Sbjct: 483 GSPQLSCSIGVVEVSADAPDVNWLMSAADSACYAAKQAGRNRVHCFNENRMALEERRQEA 542

Query: 710 DLCL----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +       A+  + + L    I R+ D   +  E L++            +FM   E   
Sbjct: 543 ERLQGVSLAMAENRMLLYAQRIARVGDPSYLHYEVLVRMRGTDGSLHLPGQFMPAVERYG 602

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           M  A++  +L  + R +           +   +N++++ + +      +  L+ +     
Sbjct: 603 MAVALDRHVLGLLFRHLQVCPAHVRQLGL-CNVNVSAQSIAEPGFLAFVCDLLERNRALA 661

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S++    +E+  + N  ++R  +  ++  G  + LDDFG+  S   YL  +P D +K +G
Sbjct: 662 SKLCFEITETAAISNLSQARAFIDAVKARGCRMALDDFGSGLSSFGYLRQLPADILKIDG 721

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +          A +R+I  + + ++  ++A+ +        LTR+G   +Q   +  P
Sbjct: 722 AFVRDMDTDPVSHATVRAISELGRELQMEVVAEWVETAEVAGALTRLGVQGLQGYAIERP 781

Query: 944 LGFNSIL 950
                + 
Sbjct: 782 QPLERLT 788


>gi|254291819|ref|ZP_04962603.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150422255|gb|EDN14218.1| sensory box/GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 768

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 217/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|114798127|ref|YP_761130.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114738301|gb|ABI76426.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 597

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/575 (23%), Positives = 249/575 (43%), Gaps = 50/575 (8%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
                D+  + V+  P +  +LG     + G    +     +       +        R 
Sbjct: 16  AFIQLDLAGNIVSVGPSLERLLG---PGLTGRP--FFETFKVETPRRIVSA-QGLNDQRE 69

Query: 477 GRLQY-----EFRVR------------------AADNQFHWMIIRIRPMSNSNGDILRYI 513
             +       + R+R                    + +    ++R+   S ++G +   +
Sbjct: 70  VTIMIRAGKTDLRLRGIVVRSAESICLLVGHVPDVNAEEAAFMLRMSDFSPADGSLDLLV 129

Query: 514 ------GIAND----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                 G+  D    + E ++        A  D LT + NR+ F  +L   L ++    N
Sbjct: 130 AAHLRKGLLQDAKTLVMELQEKSAEADALAHMDPLTAVTNRRGFFRKLEERLSIARAH-N 188

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              TV VID+D +K +ND+ G A GD +L     R+ E+     I+ RL G+ FGIIL  
Sbjct: 189 TPLTVGVIDLDGFKPVNDIFGHAAGDQLLFQSGARVREIAGPNGIVGRLGGDEFGIILPE 248

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  +I +    +  ++A P  + E    + AS GFA++  +  T+  + + A+ A+YH
Sbjct: 249 LGDEAEILEIGQRICDALAEPFKVKEGIARIGASAGFAAFPHAGDTTETLFERADYALYH 308

Query: 684 AKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           +K +  G   V + +       +  I++ L  +  + E  +VY PIIR  D +  G+EAL
Sbjct: 309 SKQQERGRPMVFTSQHEREIRYQSSIEQGLRES-ADDEFQIVYQPIIRAADGKTTGVEAL 367

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W  P  G I    F+  AE+   +  +   +L +   D   W D      + +  N++
Sbjct: 368 ARWTSPLLGPIRPDIFIRAAEQNGAVSRLTRILLRKALNDARHWPD-----DVQLSFNLS 422

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DL   E    +QA+I  + + P R+    +E+ +M + ER+   LG    +G+ + LD
Sbjct: 423 AIDLSSPESASLLQAIILDSGFPPQRLMFEITETAIMQDFERALECLGLFTAMGVRIALD 482

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL  +P D +K + S   G   +R   +I+RSI+ + K+++   + + + 
Sbjct: 483 DFGTGYSSLGYLQKMPIDRLKIDRSFTLGLMTRRGTRSIMRSIVTLCKSLDIECVVEGVS 542

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                + L  MG  Y+Q  H +  +    +L+ L 
Sbjct: 543 NGRQAEILREMGAPYLQGFHFSRAMSQTQLLEYLT 577


>gi|163759113|ref|ZP_02166199.1| GGDEF domain [Hoeflea phototrophica DFL-43]
 gi|162283517|gb|EDQ33802.1| GGDEF domain [Hoeflea phototrophica DFL-43]
          Length = 678

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 221/433 (51%), Gaps = 13/433 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       A  D+LTG+PNR +F +R   ++       + +  ++ ID+D +K IND L
Sbjct: 217 RAARDFSYLAHHDSLTGLPNRMAFNNRFEELVTQCVNSTDRQIAILAIDLDGFKDINDRL 276

Query: 584 GIAVGDDVLVSLTRRIGELL---KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           G A GD +LV + +R+ E         + AR+ G+ F IIL +      IA+ A  +R+ 
Sbjct: 277 GHASGDALLVEVAKRMSEACASLPNGIMAARIGGDEFVIILNATGYQDDIAEQAEFIRRQ 336

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I    ++    + V A+IGFA + S   +   +L ++++A+ HAK  G + V  F  +  
Sbjct: 337 ITQLHSVSGSSLVVGATIGFA-FNSPGESPHNLLVDSDMALSHAKSEGKSRVIGFNPAMR 395

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I+ +L  A+EN ++   Y   + L   ++VG+EAL +W H + G+IS +EF+
Sbjct: 396 DGFLRHALIESELASAIENGDIRPHYQIKMDLASGQVVGVEALARWHHHELGHISPAEFV 455

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE    I ++   +LER   D +S+        + + +N++ +    +++ + ++ ++
Sbjct: 456 PIAESSEHIVSLGRKILERACIDTLSFP-----GRLNVSVNLSVRQFARDDVVKTVREVL 510

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T +   ++ L  +ES+++ +  R+  +L  L+ +G+S+ LDDFGT  S LSYL    +
Sbjct: 511 QATGFPAEQLTLEVTESLMICDANRAIEVLTELKALGVSIALDDFGTGYSALSYLQRFEW 570

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +          A++ SI  +A+ +   + A+       ++ L R GC+ +Q
Sbjct: 571 DELKIDRSFVFEIEGDMRARAVIGSITSLARKLGIPVTAEGTETVGQVEALRRAGCNTVQ 630

Query: 937 DSHVASPLGFNSI 949
             +   P+  + +
Sbjct: 631 GFYFGRPVPGDEL 643


>gi|229520129|ref|ZP_04409557.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229342917|gb|EEO07907.1| sensory box/GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 768

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/568 (18%), Positives = 218/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHICFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+ VM N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAVMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|319937241|ref|ZP_08011648.1| hypothetical protein HMPREF9488_02483 [Coprobacillus sp. 29_1]
 gi|319807607|gb|EFW04200.1| hypothetical protein HMPREF9488_02483 [Coprobacillus sp. 29_1]
          Length = 991

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 101/557 (18%), Positives = 224/557 (40%), Gaps = 27/557 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++  +    TP +       S  +      +   IH +DR  F  
Sbjct: 453 YDALVKSTDDYIFICNMKDNIFKYTPSMVEEFDFPSEILTNAAAVFGTKIHPDDRYEFLN 512

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                   R      E+R    +N++ W+        + +G+   + G   ++ ++    
Sbjct: 513 SNQLIADGRTDSHIVEYRALNKNNEYVWLRCHGHVEYDQDGEPSLFAGFITNLGKKN--- 569

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                  ++DNLTG+ N+     R+                +M+++I+ +K IN +    
Sbjct: 570 -------YRDNLTGLFNQFELEKRINET--------AGPFALMILNINDFKSINQLFNRD 614

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD+VL  + + +  LL     + +L  + FGI+  +  +   I      + K      +
Sbjct: 615 FGDNVLRIIGQNLQTLLHKDATVFKLESDEFGIMFKNI-DIHSIQHIYQQIEKYSQDAHS 673

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDR 704
             ++  T+  + G         T  E+ KN E+A+ +++ +   H+  F       ++  
Sbjct: 674 YEDKHFTIQFNAGCVLSPKDGNTYLELRKNCEIALQYSRLQAQPHLILFHSHLSEEKTYS 733

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + +   L   + N      LV+ P  +    +++G EAL +W +P + NI    F+ I E
Sbjct: 734 LQLINALKQDILNDFENFSLVFQPKFKSHSHKLIGFEALCRWKNPYFQNIGPDTFIPILE 793

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  ++  +    +  W        I + IN++   L++N     ++  + K  
Sbjct: 794 NSGDIIPLGKWIFNQSLLQLKEW--ILYNSSIMMSINVSHVQLMENNFVLFIEQTLHKYH 851

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++ +  +E+ +  +       +  LR +G+ + +DDFG   S LS L   P D +K
Sbjct: 852 IPAQQVIIELTETAIAQSAYLVIQRIKELRALGVQIAMDDFGKGYSSLSLLKDEPLDIIK 911

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    +       ++S+I +   I+  ++ + I  + +++ +     DYIQ  + 
Sbjct: 912 IDRSFVKDIKKDTFNATFMKSMIELCHQIQLKVVVEGIETKGELEIIETFNPDYIQGYYT 971

Query: 941 ASPLGFNSILKLLKERF 957
             P+  +  ++L+ ++ 
Sbjct: 972 GKPMQTDDSIQLILKKN 988



 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT  K+       +A  D LTGI NR+     L   +  +  DDN    + + DID  K
Sbjct: 261 DITAIKQLT----IDASFDELTGIYNRKFGKQALQNQILKA-RDDNKNIILCLFDIDHLK 315

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +IND  G   GD V+ ++   + + L   D+  RLSG+ F +          I +    +
Sbjct: 316 QINDSYGHHDGDYVISTIASYVRKTLNSEDVFLRLSGDEFLLSFYDNTT-DNIHEHLNQI 374

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGG 689
              +    +       ++   G    T    ++ +EM+ +A+  MY  K    
Sbjct: 375 LNDLESLKHDENLPYYLSFCYGLYKITPDCSLSLNEMITHADEKMYKWKKHNH 427


>gi|322434504|ref|YP_004216716.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321162231|gb|ADW67936.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 790

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 219/434 (50%), Gaps = 8/434 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ + +     +D+LTG+ NR  F + + + +        ++  +M +D+D++K +ND L
Sbjct: 351 KANDQLRDAVLRDHLTGLGNRALFREHVGSFVTKLVR-PEMKVALMFVDLDRFKAVNDEL 409

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+    R+    +  D++ RL G+ F  + +         + A  +  +I  
Sbjct: 410 GHGVGDRLLIETAGRLERASRKEDLVCRLGGDEFV-VAMVIAGEAMARNRAEDLLDAIRE 468

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  +  R + +TASIG      +      +L+ A+ AMY AK  G +  + F V+     
Sbjct: 469 PFAVDGRVLKMTASIGVVL-GDATDDVESLLRKADGAMYSAKKLGKDQAQVFDVAFIERM 527

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +   M++++L   +E   + + + PI  +  + IVG+EAL +W H   GNIS   F+ IA
Sbjct: 528 NQNWMLEQELQRYLEEDAIQVAFQPIYSVTAKRIVGVEALARWSHAVRGNISPGVFIPIA 587

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I A+   ++ R  R++ +W +      +F+ +N+++K   D  L   + ++  + 
Sbjct: 588 EEAGLIGALGAQVMRRGCREVAAWNEAWG-VSLFLSVNVSAKQFADAGLLAAIHSMAGEC 646

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 I L  +ESV++ +       L   R  G+ ++LDDFGT  S LSYL  +P D +
Sbjct: 647 GLGAELIHLEITESVLLMDDVAVERTLMEARGYGMGISLDDFGTGYSSLSYLLNLPVDEI 706

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +R+ ++R+++ + + +   ++A+ +  E  ++ L  +GC+++Q   
Sbjct: 707 KIDRSFINDLHLDPRRVELVRAVLTLGQTLGKRVVAEGVEREDQLEILHGLGCEFVQGYL 766

Query: 940 VASPLGFNSILKLL 953
           ++ PL   ++  LL
Sbjct: 767 ISRPLESEAMNDLL 780


>gi|153801686|ref|ZP_01956272.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124122779|gb|EAY41522.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 768

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 217/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|225388314|ref|ZP_03758038.1| hypothetical protein CLOSTASPAR_02049 [Clostridium asparagiforme
           DSM 15981]
 gi|225045627|gb|EEG55873.1| hypothetical protein CLOSTASPAR_02049 [Clostridium asparagiforme
           DSM 15981]
          Length = 868

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/575 (20%), Positives = 229/575 (39%), Gaps = 39/575 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-----YIHINDR 461
            +L    + D++++ ++ RD       +     L   S  G +   +       +H +DR
Sbjct: 127 FNLTSTSAYDVLFEMNLTRDMFKVLYQVEGKYNLP--SFIGRLAEGVEIAARILVHPDDR 184

Query: 462 DNFRTIL-------DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           + FR                +   L+ +FR + AD  + W++  + P+ +        + 
Sbjct: 185 EVFRKFWSLESLLSRLASESKDNMLRGQFRSKRADGSYCWVVQTVVPVRHGGNGDKIVMC 244

Query: 515 IANDITEQKKSLEGILCNAFQ------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              DI EQK+    +  N F       D LTG+  R  F       L  +  +      +
Sbjct: 245 FIQDIDEQKQRELELRRN-FHLQDTNVDPLTGVYRRAIFFREAEAFLKQAGPEP---YCL 300

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627
           M +DI+ +K  N+  G   GD  LV+    + E  +    I   + G+ FGIIL      
Sbjct: 301 MAVDIEHFKLFNEWYGQEAGDSFLVNFGTFLREEQQASGGIAGYMGGDDFGIILPDR--- 357

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               +    ++  +               + G        I+ S M   A +A+   K  
Sbjct: 358 ---LEVLERLQNKMIRYAKERGGNAGFQPAFGIFPIADRGISVSTMYDRAVIALGEMKGN 414

Query: 688 GGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                  +     R      M+  ++  A+E  E      P   +   +I+GLE+L++W+
Sbjct: 415 YARRSCRYDSRMKRKMEENHMLLSEVQRALEQDEFTFYAQPKCNMATGKIIGLESLVRWN 474

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G I+  +F+ + EE   I  ++ ++ +++   + +W  Q    P+ I +N++  D+
Sbjct: 475 HPERGLIAPGDFLPLLEENGFISNLDRYIWDKVCFRLKNWI-QNGHRPVPISVNVSRVDV 533

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++ + +  L  +    P  +++  +ES    +      ++  LR  G ++ +DDFG+
Sbjct: 534 YALDVVKELNELTDRYGLDPRLLEVEITESAYAEDTTAVAAVVEGLRTAGFTVLMDDFGS 593

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTIIAKDIYGE 921
             S L+ L  +  D +K +   +    E+     + IL +I  MA+ +   +IA+ +   
Sbjct: 594 GYSSLNMLKDVNVDVLKIDMKFL-DMDEQSVGKGVGILEAITNMARLMGLRLIAEGVETR 652

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  L  +GC Y Q  +   P+    +   L + 
Sbjct: 653 EQVDFLLNLGCIYGQGYYFYRPMPVADLEARLSDE 687



 Score = 47.6 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 417 IVWDWDIVRDRVTT---TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
            V  +D+  D++           +       +    R  L  I+  DR     I      
Sbjct: 725 GVAFYDVCGDQIELTRANVQYYKVTRTNPVDLEEYRRTILEGIYEEDRPAAVDIFRRARL 784

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 + + R         WM +R   +    G  + Y G  +D+TEQ++  + + 
Sbjct: 785 DPLNGAEGDIRRLCEGEGTIWMHLRAFFLREQGGHQIFY-GAVSDVTEQRRREQKLE 840


>gi|116254808|ref|YP_770644.1| putative transmembrane GGDEF-EAL protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259456|emb|CAK10594.1| putative transmembrane GGDEF-EAL protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 787

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 197/468 (42%), Gaps = 34/468 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+S       A  D LT +PNR  F  R    L  +  +   R  V ++D+D++K +N
Sbjct: 326 ELKRSELHARQLALHDVLTDLPNRALFAMRFDECLAETQ-NSTERSAVALLDLDRFKAVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA-DFAIAMRK 639
           D  G A GD+++     RI  LL+  D LARL G+ F ++L    +   +      A+  
Sbjct: 385 DTFGHAAGDELIRMAAERIRSLLRPGDTLARLGGDEFALLLRDIKDHDHVLPAICEAIVA 444

Query: 640 SIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  P  L   E    V  SIG      +   + ++++ A++A+Y AK  G      +  
Sbjct: 445 ELGKPFPLLRGEAVARVGGSIGVTVVPDAGRNADDIMRYADVALYEAKMGGRGQWRLYSP 504

Query: 698 SSFRSDRVM--IKEDLCL--------------------AVENSELYLVYHPIIRLMDEEI 735
           S          +K +L                        +   L + Y  + R      
Sbjct: 505 SMDGGRNARDILKNELREVLAKDTASFADGSQSDPIVNRPDFGSLEVYYQTVHRAGAGYA 564

Query: 736 VGLEA-LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
                 L++W H + G ++ + F+ +AEE  +I A+  ++L    R    W +       
Sbjct: 565 ASGAEALVRWRHSQRGLLTPASFIPVAEEGGLIDALGFWVLREACRAACKWPE-----DT 619

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
           F+ +N +   L      E + A++ ++   PSR++L  +ES ++ +      +L  LR  
Sbjct: 620 FVAVNASPAQLRRPNFAEEVFAVLEESGLQPSRLELELTESSLIEDNSDVHTVLKSLRSR 679

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETT 912
           G+ ++LDDFGT  S LS+L     D +K + S ++         AI+ +I+ +++N+  +
Sbjct: 680 GVQISLDDFGTGFSCLSHLLRFDIDRIKIDRSFVSQLGTKANGAAIIGAIVALSRNLGIS 739

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
             A+ +  E     L  +GC  +Q    + P+    +    K    + 
Sbjct: 740 TTAEGVETEYQRDFLAALGCTDLQGYFFSKPVPLGDLDSFRKAESAVA 787


>gi|91791934|ref|YP_561585.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713936|gb|ABE53862.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Shewanella denitrificans OS217]
          Length = 777

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 136/475 (28%), Positives = 241/475 (50%), Gaps = 15/475 (3%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNR 544
           +       W      P+S S+ ++       ND ITE +   + +   A  D LTGI NR
Sbjct: 314 QTRAQSIRW------PVSGSD-ELDNLASSMNDFITEVEVRHKELNYLANHDPLTGIGNR 366

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +  +  L   ++L  ++      ++++DID++K  ND LG A GD++L  + +R+   +K
Sbjct: 367 RLLMASLDDKMELLKSNPKFTCNLLLLDIDQFKLFNDGLGHAAGDEILCLIAKRLSTKVK 426

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D L RL G+ F I+  +  +     DFA  + + +A+P    E ++ + ASIGFA   
Sbjct: 427 DSDTLVRLGGDAFAILQENV-SLASTQDFATDLLQHLAVPFVYQEHQLNLRASIGFAQVK 485

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYL 722
             K++  ++++NA+LAMY AK RG N V  F V+     S R+ +++ L  A+    L +
Sbjct: 486 L-KLSKEDVIRNADLAMYEAKRRGKNQVAIFTVNLLDTVSRRMHLEQALREALNQQSLEV 544

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + PII     +IVG+EAL +W   +   I + EF+ IAE   M+  +   +L+++   +
Sbjct: 545 WFQPIIDARYGKIVGMEALSRWSL-EGEYIPADEFISIAEASGMVAQLGKQVLDKVGAVL 603

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
              R Q   P +   +N++ +   D +L   + A   K     S + L  +ES++  +  
Sbjct: 604 QELRLQY--PALECNVNLSVQQFRDPQLISDIVACRVKYQLPASALHLELTESMIAQSES 661

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902
               ++  L   G    LDDFGT  S L  L ++PFDT+K + S +T  +     ++R+I
Sbjct: 662 EILPIMRALVNQGFKFHLDDFGTGYSSLERLKHLPFDTLKIDRSFITPLSLGDDVMVRNI 721

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           I +   +   +IA+ +  E +++ L ++GC+ IQ  + A P+ ++++   LKE  
Sbjct: 722 INIGHELGMNLIAEGVENERELEHLLQLGCNQIQGYYFARPMPYHALKIWLKEHQ 776


>gi|170690745|ref|ZP_02881911.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170143994|gb|EDT12156.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 753

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/460 (28%), Positives = 224/460 (48%), Gaps = 11/460 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G +   +    D      + E     A  D+LTG+PNR    + L     +SA   + 
Sbjct: 291 AAGFLTVALRSNRDTVALLLARESSQRLAHHDSLTGLPNRARINELLFERTAVSAPQRDG 350

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              V++ID+D +K IND LG A GD +L     R+ E++   DI+ RL+G+ F +I  + 
Sbjct: 351 LFAVLLIDLDGFKAINDSLGHAAGDQILQEAAVRLREVMPATDIVGRLAGDEFVVISEAP 410

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             S  +   A ++ K++A P  L E  + + AS+G A +     T  ++L  A+ A+Y  
Sbjct: 411 EPSRDVRLIADSIVKTLARPFVLTEALVHIGASVGVALYPEHACTGPQLLICADRALYAV 470

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEAL 741
           K  G +    F      SD    +++ DL  A+     L + Y PI+ L   E+ G EAL
Sbjct: 471 KRSGKSAYLIFDAHEHVSDESLSLLRSDLEGALRTFIGLRMEYQPILDLASGEVTGREAL 530

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +S S F+  AE   +I A+  + L +  ++ + W D      + + +N++
Sbjct: 531 IRWTHPTRGELSPSAFIPTAERTGLILALGEWALLQSCKEAVMWCD-----KVPVAVNVS 585

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L +      +  ++ KT   P R+ +  +E+V++ +   +R  + RLR +GI L LD
Sbjct: 586 PVQLREEAFASIVAGVLRKTRLPPERLNIEVTETVLLNDDVVTRRNISRLRALGIGLALD 645

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S +S L    FD +K + S +  S  +R   A++R I+ +A+ I     A+ I 
Sbjct: 646 DFGTGFSTMSTLVRFTFDKLKIDSSFVKESVHRRESAAVVRGIVALAREIGMPTTAEGIE 705

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +  +  + R GC + Q   +  P+    I + + ++ P+
Sbjct: 706 TQEQLDFVRRSGCTHAQGFLLGRPVQGCEIAR-IDDKLPV 744


>gi|307295584|ref|ZP_07575420.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
 gi|306878623|gb|EFN09843.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
          Length = 576

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/501 (23%), Positives = 233/501 (46%), Gaps = 8/501 (1%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADN--QFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             +R  +   +   R    +E R    D      +    +  +    G    ++  A D 
Sbjct: 74  AEWRQRIIQCIRSDRDSEAFELR---RDGILGPEYFYCSVGRLPKLAGQPDLFLFTALDR 130

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  +   + +      D LT +PNR  F + +   L      DN +  ++ ID+ ++ ++
Sbjct: 131 TSDRAIEKNLRRELLSDGLTALPNRTGFGEEIEDRLSNMPWPDNAQFGIIAIDLSRFSRV 190

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+ LG   GD++L+++ +R+   L+  D+LAR+ GN F I     N           +R 
Sbjct: 191 NESLGPMAGDELLITVAKRLKSGLRQGDVLARIGGNDFAIFAKLNNGLSDALHIVQRIRD 250

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +++ PI L + +I V  +IG A  TS      ++++ A+ A+  AK  G   +    V  
Sbjct: 251 ALSYPIRLSDLQIRVDCAIGCALSTSLSEDPEDVVRKAQAAVKIAKRSGKVEIYRNGVLK 310

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  ++  L  A+   EL L + P+I L   EI G EAL +W+  + G++S  EF+ 
Sbjct: 311 EAQRRFSVESRLRDALAQGELTLAFQPLIHLQTGEITGFEALARWEDEELGHVSPVEFIA 370

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALI 818
           +AEE  +I ++  +     A+ +  W  +   P P+ + +N++   +  +++    +  +
Sbjct: 371 VAEESGLITSLGRWAAYEAAQALSRWDAKFGQPVPVGVNVNLSPIQMARDDVASMFEESL 430

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +  S +R+    +ES ++ +PE++R LL  L+ + + + +DDFGT  S L+ L  +P 
Sbjct: 431 RYSGISGNRLTAELTESAIIADPEKARKLLFALKDLHMPIAMDDFGTGYSNLASLHSLPI 490

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +T       +  ++R+I+ +A+++   + A+ I  +     L  +GC   Q
Sbjct: 491 DILKIDRSFVTSMLEDRDKEIMVRTILSLAESLGLHVTAEGIETQELALALQNLGCWQGQ 550

Query: 937 DSHVASPLGFNSILKLLKERF 957
             + A P+         + R+
Sbjct: 551 GYYFARPMPEGEAFDYWRARW 571


>gi|118443481|ref|YP_878421.1| sensory box/GGDEF family protein [Clostridium novyi NT]
 gi|118133937|gb|ABK60981.1| sensory box/GGDEF family protein [Clostridium novyi NT]
          Length = 820

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 147/806 (18%), Positives = 300/806 (37%), Gaps = 102/806 (12%)

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFL 269
            M+    +L+         +G+  +   +L   +   +G         ++ +    +IF 
Sbjct: 52  GMLVGHDILVVNIFRIIASIGWCFLHGIWLEFAIVTSNGGNYKLSYKHKVLIYLFPVIF- 110

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
             ++  +    +   +  +       +  + + +P        +      +    FIIY 
Sbjct: 111 --FVRNSLHEPRA--VLVNTEIGWVDICPIDWMFP------FLVIYFMFCILGGIFIIYR 160

Query: 330 GMKGYERAVLLIPAWIL---IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
             K  ++      A I+   IFI  +   +         I   A     + I I+  +  
Sbjct: 161 WGKNSKKNREKKQAVIINSTIFIGALLGGITNILFPVLHIDTFAWGVFFIYIPIIGIWYS 220

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I          + +               + ++  +      +       I        +
Sbjct: 221 IIKYKMLSITPEYVSD------YIFKAVNEPIFFLEEDFSIKSFNKSAKIITKYE----N 270

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               N+   I   D +    +  + +        +E  +   DN+    ++  R + +  
Sbjct: 271 LQEMNFCQLIKEKDLNLNNLLEVNSIN------AFEVNLVKKDNEIVECVLSARVVHDDF 324

Query: 507 GDILRYIGIANDITEQKKSL---------------------------------------E 527
            DIL  + I  DI+E+KK+                                        E
Sbjct: 325 KDILGIVVILYDISERKKAERILKDYNIRLENKVKERTLKLEESNKTLQKEILDRKLAEE 384

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I    + D LTG+PN+  F   +  I++    D      +M +DID +K +ND LG   
Sbjct: 385 KITYMVYNDILTGLPNKLYFEKHIKNIIEKHDKDKG-HFAIMFLDIDNFKLVNDTLGHPK 443

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL--KIADFAIAMRKSIAMPI 645
           GD++L     R+  ++   ++LAR+ G+ F +++    +     I +  + M   +  P 
Sbjct: 444 GDELLKKFADRMKTIIDKNNLLARVGGDEFLLLIDGIEDEDTKHIDNIFLKMNNVLKEPF 503

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
            +   E  +T SIG A + +       M++NA+ AMY AK+ G N+++ F  + +   ++
Sbjct: 504 IIDNEEQFITVSIGTAFYPNDGENVEIMIRNADTAMYEAKNSGKNNLKFFSSQANLKLTE 563

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ ++ +L  A+E  E  + Y P + +   +IVG EAL++W       IS  +F+ +AE+
Sbjct: 564 RIAMRNNLYKALEKDEFEVYYQPQVNIRTNKIVGFEALLRWT-CNGQKISPGKFIPVAED 622

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I   +++     I             + +N++   L + +  E +  ++ +   
Sbjct: 623 TGLIVPIGYNVIKSACTTIKKLNSMGKDR-FTVAVNLSVNQLYEKDFVEKVDEILEEVQM 681

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY----------- 872
            P  ++   +E + +   +     L  LR +GI +++DDFGT+ S L             
Sbjct: 682 CPEYLEFEITERIALKGNKDVFTTLNNLRDMGIKISIDDFGTEYSSLMNIKKIDIDKIKI 741

Query: 873 -LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
                           + G T  EK  AI+ SII ++ N+  T+IA+ +  +  +  L  
Sbjct: 742 D------------MQFIRGVTEQEKDAAIVSSIIDLSHNVGVTVIAEGVEKKEQLSYLKM 789

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
             CD +Q      P+    + K ++ 
Sbjct: 790 KRCDEVQGFFYYKPMPEREVYKTIQN 815


>gi|148976580|ref|ZP_01813276.1| EAL domain protein [Vibrionales bacterium SWAT-3]
 gi|145964156|gb|EDK29413.1| EAL domain protein [Vibrionales bacterium SWAT-3]
          Length = 1040

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/581 (19%), Positives = 219/581 (37%), Gaps = 17/581 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + V +       +F       L       ++   D              +LG    
Sbjct: 462  LFEARDVTSRKLAENKLFQREANLKLYYDKQPVMMITLDGNNRIQQVNQFAEELLGYPLD 521

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G         ++++       +     ++ RG  + +   R AD    W+   IRP+
Sbjct: 522  KLLGHRPREF---YVDENAMIPRHILLQPQHKIRGVWRRDIEYRHADGSTIWIRENIRPL 578

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              S+    + + +  DITE  +  E +   A  D LT   NR  F   L   L    +  
Sbjct: 579  VESD----QLLIVGEDITETHELSEKLEYQAQYDLLTDTFNRNHFEQELQKALKEVESHM 634

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 ++ +D+D+ K +ND  G   GD  ++   + + E+L +  +LAR+ G+ F +++ 
Sbjct: 635  RTH-AMLFLDLDQLKVLNDTAGHEAGDAAILFSAQLLEEVLPYNAVLARMGGDEFAVLIK 693

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                   +      +      P    +  + +T SIG      +  T   +   A+ A +
Sbjct: 694  DCTERDAVNVCRSIISMMGDNPFLWDDIRLNLTCSIGIRLIDHTAATPQMVHAQADAACH 753

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIVG 737
             AK  G N    +        R  ++ +    +  A+ N  L L    I+    D + + 
Sbjct: 754  AAKEEGRNRYHLYHQDDEDLRRRHLEMECVNLVHEALANDRLELFAQRILGLDEDSDKMH 813

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++  +     IS   FM  +E   +   I+  ++ +    +   R           
Sbjct: 814  FEILVRIKNVDGEYISPGIFMPASERYNIAHLIDRQVIGQTLSWLEQ-RPHLIDELGMCS 872

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++   + + E  E +   +S +     +I L  +E+  M N +++     R++ +G  
Sbjct: 873  INLSGHSMGNREFVEFLIESLSNSPIPCHKICLEITETAAMSNMKQAIKFFTRIKDLGCM 932

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 933  IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIDVNEMDHVMVRSINDLAKQMGKHTVA 992

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + +     I +L  +G +Y Q   +  P     ++  L++ 
Sbjct: 993  EFVENTQIIDKLIELGVNYAQGYIIGRPKPLAELVDELQQE 1033


>gi|190890560|ref|YP_001977102.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695839|gb|ACE89924.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 454

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 218/436 (50%), Gaps = 10/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A+ D LTG+ NR    +++   +      D    T+ + ++D +K IND+ G 
Sbjct: 14  HSELQAMAYTDPLTGLGNRNRMREKVLQ-ISAERASDPAPFTIGIANLDSFKPINDLFGS 72

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD++L  +  R+   +    ++ R  G+ F  +L           F   +R+ ++ P 
Sbjct: 73  SAGDEILCQVAHRLKACIPDGAMVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPY 132

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           +L +R + ++AS GFA +  +     E+LK+AE A+Y +K RG   +  +     +  + 
Sbjct: 133 DLGDRNVRLSASFGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKR 192

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S   F+ +AEE
Sbjct: 193 ATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPGVFVPLAEE 252

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I A++  +L + A   +SW  +     +F+  N++S  L+D      + +++ +  +
Sbjct: 253 RGFIDALSETLLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSGSILSILGRVGF 307

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R++L  +E+ VMG+ + +  ++  LR  G+ ++LDDFGT  S L  L    FD +K 
Sbjct: 308 DPHRLELEITETAVMGSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKI 367

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + ++     R +  I+++I+ M   +E  ++A+ I    +  +L  +GC   Q  H  
Sbjct: 368 DRAFVSRINSDRASEHIIKAILAMCDGLELEVVAEGIEDYAEAVKLRTLGCGMGQGYHFG 427

Query: 942 SPLGFNSILKLLKERF 957
            P    + L+ L E +
Sbjct: 428 RPADGIATLRFLHENY 443


>gi|188996139|ref|YP_001930390.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931206|gb|ACD65836.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 688

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 109/568 (19%), Positives = 235/568 (41%), Gaps = 34/568 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
              AV  S   +   D           +  + G     + G   R +   I   D + ++
Sbjct: 134 LRKAVDNSKMWLLITDSNGTIEYVNQYVIDLTGYTKEEIIGKNPRIFKSGI--QDIEFYK 191

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + ++ +  +       F  +  D +  ++   I P+   N   L+++ I  DIT++K  
Sbjct: 192 ELWNTILSGK--PFSAVFVNKTKDGRLIYIDQTIYPIKLKN-KTLKFVSIGRDITQEKLL 248

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I    + D+LT +PN  SF  + + I+     +   +  +++IDI     +N     
Sbjct: 249 SEEIEKYKYYDSLTELPNFISFKIQFSEIIKNKIYE---KFGLILIDIYNMSVVNASYEF 305

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             G+++L  + + + +        AR+  + F I++ +  N          +R ++   +
Sbjct: 306 ETGNEILKEVAKNLKKEF-PDGYAARIGSDEFAILIPNIENES---ILIYKIRDALDKDL 361

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703
           N  + +I ++ +     +     T  E+  NA L +  AK  G N ++ +     +   +
Sbjct: 362 NTSKGKIHISYNASIVLYNEDGQTFEELYNNAVLTLNTAKKEGENVIKFYESQLNKKLEE 421

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ +  A +       + P  +  D  + G E+L++            +F+   E 
Sbjct: 422 YLTAEKIVEKAFKKKLFKFYFQPYFKSEDFSVAGFESLVRIVDEDGTVYPPIKFIDYLEN 481

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK------------DLLDNELC 811
              I     + LE +++ I  +    +     I +N++ K            +L D    
Sbjct: 482 SKYITKFEEWALEEVSQKIKKFNSLNDKKDRTISLNLSPKGLLGYSLNLTSDELSDKNFV 541

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG--ISLTLDDFGTKCSL 869
           E +++L  +T    + + +  +E  V+ + E+S+ +   ++ +   I + +DDFGT  S 
Sbjct: 542 ERLKSLPIETQ---NNLVIEITERNVIKDIEKSKKIFKDIKDLNKNIKIAIDDFGTGYSS 598

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +  D +K + S +      R   ++++ II +AK+     IA+ +  E  +K L
Sbjct: 599 LTYLRDLAIDILKIDMSFVRNIARSRQDLSLVKFIIGLAKDFGLKTIAEGVETEEQVKLL 658

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +G DY+Q  + A P+     +KL+ E
Sbjct: 659 SLLGADYLQGFYFAKPMPEEEAIKLIME 686


>gi|238062791|ref|ZP_04607500.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237884602|gb|EEP73430.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 843

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/444 (26%), Positives = 204/444 (45%), Gaps = 15/444 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +         A  D LTG+ NR + L +    L   A D      ++++DID++K++N
Sbjct: 384 ELRLVTARSSYEAVHDPLTGLLNRAAMLGKGDQALRQRAHDH--PVALLLLDIDQFKEVN 441

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-------NNSLKIADF 633
           D LG A GD +L     R+G L +  D+L RL G+ F ++L S                 
Sbjct: 442 DTLGHAAGDQLLRLTANRLGALTRSGDLLGRLGGDEFALLLTSVPVIGGRTAPMAYALRQ 501

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV- 692
           A  + + +A P  +    ++V  S+G     +     +E+L+ A++AMY AK  GGN   
Sbjct: 502 AREIAERLAAPTEVAGVRMSVEVSVGVVVADAGTADLTELLRRADIAMYQAKEGGGNVAA 561

Query: 693 ESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                 +  +D++ +  +L  A   + +L L   P + L      G+EALI+W HP+ G 
Sbjct: 562 YDSSKDAASTDQLALLAELREALAADDQLVLALQPAVDLATGAPTGVEALIRWRHPRRGW 621

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+   E    +     ++L++       W       P  I +N++++ LLD  L 
Sbjct: 622 LGPGDFIRPVENSEQLGTFTRYVLDKALTVAAEWARAGLDVP--ISVNLSARSLLDPRLP 679

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   + +    P R+ L  +E+VVM   E    +L  LR +G+ L +DDFGT  S L+
Sbjct: 680 AEIGEALRRHQVPPHRLVLEITETVVMSELEVIDEVLATLRSMGVQLAVDDFGTGFSSLA 739

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           ++  I  D +K + S +     + +  AI+R+ + +A  +   ++A+ +        L  
Sbjct: 740 FVTRIAVDELKVDRSFVIRMADSPEAAAIVRATVGLAHELGLRVVAEGVETAEQRLALAE 799

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
           +GC   Q  H   P+  + I  +L
Sbjct: 800 LGCTSAQGYHFFKPMPADKIGAVL 823


>gi|91782909|ref|YP_558115.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
 gi|91686863|gb|ABE30063.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia xenovorans LB400]
          Length = 604

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 127/590 (21%), Positives = 257/590 (43%), Gaps = 26/590 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           TVI  + A G    G       ++  +    G+ D++   D     +  +      +G  
Sbjct: 16  TVIDRLRALGRREHGKPQTAAGRAAQLEQVVGAVDLLAHVDDELHFLYVSDASLRFIGYH 75

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +    +   D      +L                +++     + + + +R 
Sbjct: 76  REYLETITLH--DLVAPADVPRLDALLTRAAASGNVEKATLGLIKSL---TYPITVELRV 130

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSAT 560
           + +S+     Y     D++  + + E  L  A   D LT + N+ + +  L      +  
Sbjct: 131 VRSSHDGADGYAIAGFDVSAWRATEER-LTQALHLDRLTNLANQSALIPALLDAQQQADA 189

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++++D+D Y+++N  LG   GD++L   +RRI  +    + +AR++ + F I+
Sbjct: 190 H-GTPAALLLLDLDDYQRVNRALGYDAGDEMLRDTSRRILNMTSPGETVARVASDEFAIL 248

Query: 621 LISENNSLKI----ADFAIAMRKSIAMPINLLEREITVTASIGFASWTS--SKITSS--- 671
           +    +           A  +  +I  P     +++ ++ASIG A +        ++   
Sbjct: 249 VKPAASRTDAAAAAETLARRLLTAIQQPYVFNGQQVHLSASIGIALYPDVRHANDTAAHD 308

Query: 672 -EMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             +L+ A+ A+  AK  GGN +  +    +   ++R+ ++ DL   V N E  L + PI 
Sbjct: 309 THLLRWADHALLQAKAAGGNTLAFYVPDDNPADAERLKLEADLYDGVRNGEFSLHFQPIT 368

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 +VG+EALI+W HP  G +  S F+ +AE + +I  +  ++L+     +I W  +
Sbjct: 369 SSRTHGVVGVEALIRWLHPVHGLVPPSMFIPLAESIGLINFLGNWVLKVACMQLIQWDAK 428

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                 ++ +N++ +   D    + ++  I  T   P R+    +ES++M +P  +++LL
Sbjct: 429 GICLQ-YVAVNVSPQQFRDPRFKDAVREAIELTGIDPRRLVFEITESLLMHDPAHAKVLL 487

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L  +GI   +DDFGT  S L+YL   P   +K + S +     +    AI+ +++ +A
Sbjct: 488 EDLTAMGIRFAVDDFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDQAIVSAVVGLA 547

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + ++  ++A+ +  E     LT MGCD+IQ   V   L  + + +  K R
Sbjct: 548 QTLDLELVAEGVETEAQRTLLTEMGCDHIQGWLVCKALPSDELAERFKAR 597


>gi|241202876|ref|YP_002973972.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856766|gb|ACS54433.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 515

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 211/445 (47%), Gaps = 13/445 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR   ++ ++  + ++ + +   A  D LT +PNR+         +      +     V 
Sbjct: 68  LRIRDLSREVHRRLQAEKNVDWIACHDTLTELPNRRFLDSICAQAMSDQRAQET--YAVF 125

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +KK+ND+LG   GD VL ++ +R+  L    + + RL G+ F ++     N   
Sbjct: 126 SIDLDGFKKVNDLLGHDHGDAVLKTVAQRLSSLF-PRERVFRLGGDEFVVLARRTGNPD- 183

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +   I  P       + + AS+GFA +  +     +++++++ AMY AK +G 
Sbjct: 184 LVALGNRIVTVIGKPFTFNGVAVDLGASVGFALFPENGDDLGQVIRHSDCAMYVAKKQGR 243

Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N V+ F  S       RV ++ DL  A++ +E+   Y P++ L    I+G EAL +W   
Sbjct: 244 NLVKPFVPSMQDELAKRVRLEADLRAAIKKAEIVPYYQPLVDLKTNRIIGFEALARWKTA 303

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               I  +EF+ +AEE  +I  +   +L     D +SW ++     + +  N++   L D
Sbjct: 304 SGEFIPPNEFIPVAEEAGLIVELTDQLLRHACADALSWPNE-----LVLSFNLSPIQLSD 358

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++        R++L  +ES ++ +   +R++L  L   G+ + LDDFGT  
Sbjct: 359 RLLGLRILKILGDVGLPAHRVELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGY 418

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L    FD +K + S ++   + +K+  ++++II +   +  TI A+ I  E  ++
Sbjct: 419 SSLSQLSNYRFDKIKIDRSFVSSFETNDKQDKVIKAIIALGAGLGVTITAEGIEEESQLQ 478

Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL 950
            L  +GCD  Q   +  P     + 
Sbjct: 479 RLQDLGCDIGQGYLLGRPAPAAELA 503


>gi|28898528|ref|NP_798133.1| hypothetical protein VP1754 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365031|ref|ZP_05777602.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260879573|ref|ZP_05891928.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260894952|ref|ZP_05903448.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus Peru-466]
 gi|28806746|dbj|BAC60017.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086009|gb|EFO35704.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308093230|gb|EFO42925.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308111593|gb|EFO49133.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 719

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 208/438 (47%), Gaps = 18/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT + NR+  L  L   +            V+ +D+D +K IND  G  V
Sbjct: 271 RVEFMAYHDILTSLSNREKLLIDLQEQISAKRA---PTLAVLFVDLDDFKHINDNYGHNV 327

Query: 588 GDDVLVSLTRRIGELLK--------FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           GD +LV L+  + + L            + +R+  + F ++    N+     + A  + +
Sbjct: 328 GDKLLVHLSALLRKELPIYIEPDYRPWILASRVGADEFVVVFPCNNSLE-AREIANQIHR 386

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P+ L    I +T S+G A +      +  +L+ + LA   +K RG + +  +  + 
Sbjct: 387 QVLSPLRLDSHNIRLTTSLGVAVYPEFGCNADSLLQLSSLAAQESKRRGKDIMSVYDPAF 446

Query: 700 FRSDRVMI--KEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             + +  +  + +L     + S+  L Y P   L   ++VG+EAL++W+HP+ G I    
Sbjct: 447 DATVKQRLYIERELSRSIHDLSQFELWYQPKFDLKTYQLVGVEALVRWNHPEKGYIGPEL 506

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I  +   ++E   +    W +        I +N++ + +   +L    + 
Sbjct: 507 FIPIAEQNDLILDLGEHLIETAIKQRAEWAEAF-DHDFHIALNLSPRQIYRQDLSLIFEH 565

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +S+   S   I +  +ES++M + E++  +L +L+  GI + LDDFGT  S LSYL  +
Sbjct: 566 FLSQYDVSAKDIHVEVTESLLMDDIEKAHFVLRKLQATGIEVWLDDFGTGYSALSYLQQV 625

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            FD +K + S +  + +     +++R+II MA N+   ++A+ I  +  +  + R+ CD 
Sbjct: 626 NFDGLKIDRSFIAQTQQDNKDDSLVRAIISMAHNLGMKVVAEGIETQKQLALIERLNCDV 685

Query: 935 IQDSHVASPLGFNSILKL 952
            Q   +  P+    +L+L
Sbjct: 686 AQGFFLGKPVPAAQLLEL 703


>gi|237798723|ref|ZP_04587184.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806156|ref|ZP_04592860.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021576|gb|EGI01633.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027269|gb|EGI07324.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 784

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/431 (25%), Positives = 212/431 (49%), Gaps = 11/431 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++R+ +++ +          ++ + I+    IN+      
Sbjct: 352 QLAHNALHDNLTGLPNRALVIERVGSLIAVQRQ-----FALLYLSIENLTTINESADAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L  +  R+  +++  D LARLS N F ++L +  +       A A ++ I  P+ +
Sbjct: 407 VEQLLRQVALRLQGIVRSGDTLARLSANEFLLLLDNTAS-DGAVGMADAAQRLINKPLRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
             +E+T+   IG   +     ++ E+L  A +A    A   G   +           ++ 
Sbjct: 466 DNQELTLECCIGITVYPEHGGSAQELLNRAAIARKDAALLPGRLQIYEDGRDLAHQRQIC 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +  EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQRGELTLHYQPKLDIRQGYVRQAEALLRWMHPRFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL  +L   +  LI +      
Sbjct: 586 IHLLTDWVIEEAFRQLADWRQRGLI--LQVSVNISADDLLSGDLAGYVVRLIKQYGVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+R+ I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRDLDETSEDAVIVRATIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLKE 955
              +    + +
Sbjct: 764 TAVAFEAWMTQ 774


>gi|114569465|ref|YP_756145.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
 gi|114339927|gb|ABI65207.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
          Length = 656

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 212/453 (46%), Gaps = 11/453 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D    ++        A  D LTG+PNR+SF   L   ++           + ++D+D 
Sbjct: 197 VRDRETAEQLERDARHLAECDALTGLPNRRSFFLALDQHIERL-RSHGEPFILGLVDLDG 255

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-SENNSLKIADFA 634
           +K +ND  G A GD++L  +  R+ ++       ARL G+ F ++       +       
Sbjct: 256 FKPVNDTYGHAAGDEMLKIVAERLCDIADETVTPARLGGDEFALLAAIPCTLNETALALG 315

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHV 692
             +  +++ P  L E     + S+G       ++++ E+++ A+ A+Y AK   +G   V
Sbjct: 316 HRVEAALSEPYELGEYTCKSSGSVGLLICNDPQVSAQELMERADHALYFAKRALQGKAVV 375

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            +  +    +    + + L  +   +E  + + P   L+  ++ G EAL +WD P+ G++
Sbjct: 376 FNAALEQEMTASSQLDKALRRSDHEAEFSVKFQPQYDLVKSKVTGFEALARWDSPELGSV 435

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   +I+ +   +L +  R++ SW        I +  N+++ DL+  +  +
Sbjct: 436 TPDLFIPAAERAGLIRGLTQTLLSKALREMASWP-----TDITLSFNLSAHDLMSPQAMD 490

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   + ++    SRI+   +E+ +M +  ++R  + ++   G S+ LDDFG   S L Y
Sbjct: 491 SLLDTVRQSGLPASRIEFEITETAMMSDFNQARRAIDQISAAGHSIALDDFGVGYSSLQY 550

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P   +K + S ++   E   +  I+R+++ ++++++   + + +  E  +  L  +
Sbjct: 551 LQQLPVSKLKIDRSFVSQMLEDSSSFKIVRTMLALSQSLDLGCVIEGVETEAQVHILRTL 610

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           G  ++Q   + +P+  + I  +L    PL K +
Sbjct: 611 GARHVQGYLIGAPMDADQIDPILSTPMPLRKAS 643


>gi|294666783|ref|ZP_06732017.1| phosphodiesterase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292603444|gb|EFF46861.1| phosphodiesterase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 788

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 212/442 (47%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  ++D +         V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLERLKDVVDQTVASGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ ++  +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAASVQQDAQRLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L +  I + ASIG A           +L+ A++A              +R+        
Sbjct: 463 VLPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQVGTTATFGASVYRMGQDEQHLR 522

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            ++   DL  A+  +EL L + P I L  + +  +E L++W HP  G I   EF+ +AE 
Sbjct: 523 RLRLTGDLRQAIGANELTLRFQPKICLRTDHVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L+   R    WR Q       + IN+++ DL D  L + ++  +     
Sbjct: 583 SGVIHPLTRFVLDEALRCQAQWRKQGLQLG--MAINLSALDLSDPGLPDFVRGCLEHHAV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P D +K 
Sbjct: 641 PAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVDELKI 700

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    +      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 701 DKSFVMQLADGTDDAFIVRSTIDLGHNLGLSVIAEGVENTTALALLRGYGCDMVQGYLYS 760

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 761 PPLEEAPLVAWCMRQLGMSTPA 782


>gi|170703025|ref|ZP_02893854.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
 gi|170132066|gb|EDT00565.1| diguanylate cyclase/phosphodiesterase [Burkholderia ambifaria
           IOP40-10]
          Length = 650

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 242/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 103 DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTATLEGLLARAARSGQVEKAT 160

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 161 ICIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSAWRALEARLTYEMHHDPMTGL 217

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A +      ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 218 DNLSALVPALMRA-QQAADESGTCAALLLLDLDDYQRINRALGYDAGDTLLRDTAQRLQA 276

Query: 602 LLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 277 LVAPGEQLARVASDKFAVVLTAPNRARASDAADALARRLQAAVREPYVFQGQTVHLSASI 336

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN             ++R+ ++ D
Sbjct: 337 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHEPVDDPADAERLKLEAD 396

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     + G+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 397 LYDGVRNGEFSLHFQPITRSQSGAVDGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 456

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 457 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 515

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P +++ LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 516 EITESLLMHDPAQAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 575

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 576 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 635

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 636 LARRFEAQQ 644


>gi|153836155|ref|ZP_01988822.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ3810]
 gi|149750430|gb|EDM61175.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ3810]
          Length = 719

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 209/438 (47%), Gaps = 18/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT + NR+  L  L   +            V+ +D+D +K IND  G  V
Sbjct: 271 RVEFMAYHDILTSLSNREKLLIDLQEQISAKRA---PALAVLFVDLDDFKHINDNYGHNV 327

Query: 588 GDDVLVSLTRRIGELLK--------FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           GD +LV L+  + + L            + +R+  + F ++    N+     + A  + +
Sbjct: 328 GDKLLVHLSALLRKELPIYIEPDYRPWILASRVGADEFVVVFPCNNSLE-AREIANQIHR 386

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P+ L    I +T S+G A +      +  +L+ + LA   +K RG + +  +  + 
Sbjct: 387 QVLSPLRLDSHNIRLTTSLGVAVYPEFGCNADSLLQLSSLAAQESKRRGKDIMSVYDPAF 446

Query: 700 FRSDRVMI--KEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             + +  +  + +L     + S+  L Y P   L   ++VG+EAL++W+HP+ G I   +
Sbjct: 447 DATVKQRLYIERELSRSIHDLSQFELWYQPKFDLKTYQLVGVEALVRWNHPEKGYIGPEQ 506

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I  +   ++E   +    W +        I +N++ + +   +L    + 
Sbjct: 507 FIPIAEQNDLILDLGEHLIETAIKQRAEWAEAF-DHDFHIALNLSPRQIYRQDLSLIFEH 565

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +S+   S   I +  +ES++M + E++  +L +L+  GI + LDDFGT  S LSYL  +
Sbjct: 566 FLSQYNVSAKDIHVEVTESLLMDDIEKAHFVLRKLQATGIEVWLDDFGTGYSALSYLQQV 625

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            FD +K + S +  + +     +++R+II MA N+   ++A+ I  +  +  + R+ CD 
Sbjct: 626 NFDGLKIDRSFIAQTQQDNKDDSLVRAIISMAHNLGMKVVAEGIETQTQLALIERLNCDV 685

Query: 935 IQDSHVASPLGFNSILKL 952
            Q   +  P+    +L+L
Sbjct: 686 AQGFFLGKPVPAAQLLEL 703


>gi|255019342|ref|ZP_05291462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidithiobacillus caldus ATCC 51756]
 gi|254971214|gb|EET28656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidithiobacillus caldus ATCC 51756]
          Length = 913

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/575 (19%), Positives = 230/575 (40%), Gaps = 14/575 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             T    V      S+    +    + A   + + +   D  R  V        + G   
Sbjct: 228 HITHFVSVQRDVTLSRRTEQELRLSAQAFE-TQEGILITDAQRRIVKVNQAFTRVTGYTL 286

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G     L   +  D D +  +       R G  Q E   R  + + +   + I  +
Sbjct: 287 EEVRGLTPAILQSGN-QDADFYEAMWREI--EREGAWQGEIWNRRKNGEVYPEFLSITAV 343

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + NG +  YIG   DI+  K     +   A  D LT + NR++  + L      +   +
Sbjct: 344 QDGNGQVSHYIGHFFDISYHKAREATLERLARHDPLTDLLNRRALDEELLRAQRRADAQE 403

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            L   V+++D+D +K IND  G   GD +LV + +R+ + L+         G+ F ++L 
Sbjct: 404 RL-LAVVMLDLDDFKPINDRYGHDQGDALLVLVAQRLRDHLRRSVFPRPPWGDEFVLMLE 462

Query: 623 SENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKI-TSSEMLKNAELA 680
                 ++      +++++  P  L    E+ +  S+G + +  S      E+L+ A+ A
Sbjct: 463 DLRQLDELEPILDKLQRALCQPYRLRDGVEVQIGVSMGVSIYPFSAQGNLDELLREADQA 522

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           ++ AK + G  +  +           +   L        +   + P+       +VG+EA
Sbjct: 523 LFAAKQQKGQRLRPWSFWEPPQSARRL-YPLRERFRTQGVEAWFQPVWDQQSGRVVGIEA 581

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +        ++  EF+   +E   I  +   +LE+    + +  D    P +++ +N+
Sbjct: 582 LARLRGDDGSVLAPGEFLPQLQETD-IFDLTNQILEQSLTALTALDDL--DPELWVSVNL 638

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
               L+     + +Q ++     +P RI     ES    +   ++  L  L+ IG+ L L
Sbjct: 639 DP-QLIGITCLKCVQQMLQGQRIAPQRIVFELLESGDFLDRRLAQDHLLDLKAIGVRLAL 697

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DD G+  S L  L  +P D +K + S + G  E+   +  + +++ ++ ++   ++A+ +
Sbjct: 698 DDIGSGYSSLLRLKELPIDKIKLDQSFVRGLEERPGDLHFVEALLELSSSLNVELVAEGV 757

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                   +   G  Y+Q   +A P+  +++   L
Sbjct: 758 ETAAIRDAVAVAGVRYLQGYAIARPMPLDALRNFL 792



 Score = 81.9 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 61/211 (28%), Gaps = 4/211 (1%)

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA-ITKRLDNDIIQPALVGGLVLIVILI 382
              +   ++    A L   A     +      +      +       +          + 
Sbjct: 46  SVFVSQTLRDPRWAGLRDLAEEFTLLACWSTPIRNSYGNVLGTFALSSFTERAPNREQVR 105

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               I  V+A   F +         + A+    + V   D  +  V   P    + G   
Sbjct: 106 LLESIAAVIADVLFQEERDGRDRCFAAALRAIDEGVLLTDAEQRVVYANPAFLRLSGYEL 165

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G    +L     +     R  L   +   R     +      D    W  + I P+
Sbjct: 166 AEILGKNCRFLQG--PDTDPATRQSLHDALAEGRV-FHGDILNYRQDGTPFWNALNISPV 222

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ G I  ++ +  D+T  +++ + +  +A
Sbjct: 223 RDAQGHITHFVSVQRDVTLSRRTEQELRLSA 253


>gi|326797268|ref|YP_004315088.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326548032|gb|ADZ93252.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 573

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 210/440 (47%), Gaps = 8/440 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+K     I     +D LTG+ NR  F +     +  +  + + +  V+ +D+D++K+
Sbjct: 130 VVERKHIETQIAQLLKRDPLTGLGNRLIFEEHAELAIARARRNAH-QIAVIFMDLDRFKQ 188

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD +L  +++R+   ++  D++AR+ G+ F ++L + +     +  A  + 
Sbjct: 189 VNDSLGHHVGDLLLTLISQRLDRSIRKSDVVARIGGDEFVLLLDNIDRPDNGSLIAAKIL 248

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  P  + E  I V+AS+G A +       +E+++ A++A+Y  K +   H   F   
Sbjct: 249 HAVTRPAVIGEHSIQVSASMGIAMYPQHGQNCTELMQKADMALYECKQQLDQHFLMFNER 308

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + ++ +L  AVE     L Y P I L  E I G+EAL++W  P        +
Sbjct: 309 MQEKLKHIMTLERELNQAVEMEAFELYYQPKIDLKSELITGVEALVRWPMPDGSIRMPGD 368

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A     I  I  + LE   + I  WRD      I I +NI+ + L   E  + +  
Sbjct: 369 FIPEAVRTGAIIPIGEWALETACKQIAQWRDLGAR--IPIAVNISPRHLKLPEFTDRLLE 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +    P  ++L  +E  ++     +  +L  +R  G+ + +DDFGT  S + YL  +
Sbjct: 427 KVGRYNIDPGLLELELTEEALVETGASNIFILQEIRNAGVKIAIDDFGTGYSSMRYLKVL 486

Query: 877 PFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           P D VK + + ++   G+      I+ +I+ +AK +   ++A+ +  E     L  +GCD
Sbjct: 487 PIDCVKIDKTFISGGEGNDLSDPTIIEAIVFLAKGLSLDVVAEGVETEAQKNALAEIGCD 546

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q   ++ P+    + +LL
Sbjct: 547 KAQGFVISPPIPSRLLNQLL 566


>gi|71282335|ref|YP_267662.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71148075|gb|AAZ28548.1| sensory box sensor/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 782

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 102/441 (23%), Positives = 195/441 (44%), Gaps = 16/441 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A  D LT +PNR      L  +++           V+ +++ + K +ND L
Sbjct: 346 QREEAITHRADHDPLTDLPNRNKLNKTLKKLIEQQK-----NFLVLHLNLSRLKDVNDTL 400

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G  VGD+V+  L  R+  L +      LA L  + F +++        I      +R  +
Sbjct: 401 GHDVGDEVIKELASRLHNLCQMNSFNALAHLGADEFILLVEHLKVDEAI----YQLRAEL 456

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSF 700
               +     + +   IG A++    +    +L+ A+ A+   + +     +    +   
Sbjct: 457 EPIFDYQGISLQLQVRIGVAAYPEHAVDDKSLLQMADTALNSTREKRKLVQIYHPDLDVN 516

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ +  DL  A+   EL L + P + L  + +   EAL++W HP  G +    F+ I
Sbjct: 517 TVERLSLINDLKQAIPAGELELHFQPKMCLKTKTVTHAEALVRWQHPTLGMVPPDNFIHI 576

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   IKA+  ++         +W++Q     + I IN+++++L +N+    +   I  
Sbjct: 577 AEQTGQIKALTRWVFITALDQYNAWQEQGID--LNIAINVSAENLKENDFHHFICQSIMA 634

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 +I L  +ES V+ +PE +  LL   +  G+ +++DD+GT  S L+ L  +P   
Sbjct: 635 AKVPAEKITLEVTESSVVEDPEAAIKLLAEFKDYGMKISIDDYGTGYSSLAQLKQLPVHE 694

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      E    I+RS I +A N+   ++A+ I  E  +  L   GC+  Q  
Sbjct: 695 LKIDKSFIQHLEHDEDDQIIVRSTIELAHNMGLHVVAEGIEDEFALNWLAAHGCELAQGY 754

Query: 939 HVASPLGFNSILKLLKERFPL 959
           +++ P     +   L  +  +
Sbjct: 755 YISKPKPAMELTPWLLAQLTI 775


>gi|261210212|ref|ZP_05924509.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
 gi|260840752|gb|EEX67301.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
          Length = 741

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 212/562 (37%), Gaps = 15/562 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 181 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNQFAEQLLGYPAEAMLGH--HIRDFY 238

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D    R +L     +     + E   +    +  W+   IRP+     +    + + 
Sbjct: 239 QDEDALTPRQVLLLPSRHASSVWRREVSYQHHTGETVWVRENIRPLL----ETGTLLIVG 294

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D+LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 295 EDITETRQLADQLAYQARYDSLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 353

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F I+L        +      
Sbjct: 354 KVLNDTAGHDAGDGAIQFCASMLEDVLPFRATLARMGGDEFSILLRDCTERDAVLVAQSI 413

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +P         +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 414 IHALSEVPFVWEHIRFNLTCSIGIRMMDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 473

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWGN 751
                  R   + +    +  A+ N  + L    I+ L   ++ +  E L++  +     
Sbjct: 474 QDDADLRRRQQEMECVNLVHDALANDRIELFAQRIVPLNHPDVQLHFEVLVRIKNAVGEY 533

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    + +  +        + IN++   + + +  
Sbjct: 534 VSPGIFVPASERYNLAHRLDRQIVEQTLSWLEARPEVIKKLG-RVSINLSGNSIGNPDFV 592

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +       ++I    +E+  M N  ++  +  +L+ +G  L LDDFG+  S   
Sbjct: 593 AFLLDRLCHGRIPCNKICFEITETAAMCNLNQAITVFSQLKNLGCILALDDFGSGLSSFG 652

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  T +A+ +  E  ++ L +
Sbjct: 653 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKTTVAEFVENEQILQALQQ 712

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
           +G DY Q    + P     ++ 
Sbjct: 713 IGVDYAQGYLFSRPQPIADLVA 734


>gi|119964390|ref|YP_948938.1| GGDEF domain/EAL domain-containing protein [Arthrobacter aurescens
           TC1]
 gi|119951249|gb|ABM10160.1| putative GGDEF domain/EAL domain protein [Arthrobacter aurescens
           TC1]
          Length = 517

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/442 (28%), Positives = 217/442 (49%), Gaps = 9/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  ++   +   A  D LTG+ NR +F   LT     +    N RP ++++D+D +K IN
Sbjct: 73  QLNEAHLAMQRMAMTDPLTGLNNRSAFATALTKA-QANGGQGNKRPAILLLDMDGFKAIN 131

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD VL ++  RI   ++  D++AR+ G+ F ++L       + +     +  +
Sbjct: 132 DSLGHTIGDKVLETVANRISGAVREQDMVARMGGDEFAVLLTEVT-PAEASAIGSRILAA 190

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +A  + +  + +    S+G          + E++  A++AMY +K  G   ++ F     
Sbjct: 191 VAGVMEIEGQHLRCGVSMGLRMADP-GQRAEELMMEADIAMYESKADGRGKLKVFAADML 249

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R  R  +  +L  A+  S+L L Y PIIRL   EI G+EAL++W+HP  G I   EF+
Sbjct: 250 LARQMRNQLVGELKEAIAGSQLVLYYQPIIRLDTREIEGVEALVRWNHPTRGIIMPDEFI 309

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRD--QANMPPIFILINIASKDLLDNELCEGMQA 816
            IAE+  MI  +  ++L      +  WR           + IN+++ DL   E  E ++ 
Sbjct: 310 PIAEDTGMISDLGGWVLRTAVEQLKQWRSDPLTAGHNFSMRINVSAADLQRLEFIEDVRE 369

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++     PS + L  +ES V+   +  R  L  LR++G+ L +DDFGT  S +SYL  +
Sbjct: 370 ALASADLDPSLLVLELTESAVIQGNDLDRYTLNSLRRLGVGLEIDDFGTGYSSISYLRQL 429

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P DTVK + +L++  GS   + A+L +++ + +      + + I      + L  +GC  
Sbjct: 430 PVDTVKVDRTLLSALGSDPSQPALLAAVLQLIRACGLAAVWEGIESAEQAEYLLSIGCTS 489

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q  + + PL    + + LK  
Sbjct: 490 GQGYYFSRPLPEAQLTEQLKHH 511


>gi|37676790|ref|NP_937186.1| hypothetical protein VVA1130 [Vibrio vulnificus YJ016]
 gi|37201334|dbj|BAC97156.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 591

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 203/433 (46%), Gaps = 9/433 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
               ++  D LT +PNR++F   L  +  L+         ++ IDID +K+IN+  G   
Sbjct: 162 KYREDSRTDYLTQLPNRRAFYSDLNQVESLAQQ--GRNCALLKIDIDAFKEINESFGHEQ 219

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIADFAIAMRKSIAMPIN 646
            D +L   +RR+ +       + R+ G+ F +++  +++   ++      +++++     
Sbjct: 220 ADLLLKRFSRRLRKNTLGFGQVYRMEGDEFAVLVYEKHSINDEVDALLDKLKRALTAAFE 279

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDR 704
           L      ++ + G A +  S       L+N+++A   AK RG   V  +  +       +
Sbjct: 280 LERGSYQISYATGIALFNESMTNLDIWLRNSDIAAQKAKTRGRGQVRWYDEALLDETIRQ 339

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+ +L  A+E  +  LVY P + +   EI G EALI+W HP+ G I+  EF+ IAE+ 
Sbjct: 340 HQIERELDKAIELKQFSLVYQPKVSITTGEITGAEALIRWQHPELGTITPFEFITIAEKT 399

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  I  +++    +    W D      I + +N+++     +++   ++  ++++   
Sbjct: 400 KQIIPIGRWVILEACQQAKKWLDLGY--KIPVSVNVSTVQFAHDDIELQVRTALAESHLP 457

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S ++L  +E+V+M  P++   +   LR  G+++ +DDFG   S L+YL  +P D +K +
Sbjct: 458 ASYLQLEITETVLMKEPKKLIEICHNLRCEGVTVAIDDFGIAYSSLNYLKQLPIDVLKID 517

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +           ++R+I+ +  N++  +IA+ +  E     L    CD  Q    + 
Sbjct: 518 KAFIDDCVDNHHDHMLVRTIVQLGHNMDKKVIAEGVETEEQRLLLVSEQCDEFQGYLYSK 577

Query: 943 PLGFNSILKLLKE 955
           PL      + L +
Sbjct: 578 PLDVEEFNRQLLQ 590


>gi|330816089|ref|YP_004359794.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327368482|gb|AEA59838.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 611

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 126/564 (22%), Positives = 253/564 (44%), Gaps = 20/564 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +          I   D      +L    
Sbjct: 54  GAVDFLAHVDRDLRFLYVSEASLRFIGYHRDYL--RTLTLRDLIPEQDTATLEALLARAS 111

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                       V++     + + + +R + + +  +  Y   A D++  +     +   
Sbjct: 112 QTGHVEKATVCIVKSL---TYPLDVELRAVRSHHAGVDGYAIAAFDVSAWRALEARLTYE 168

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D +TG+ N  + +  L      +A +D     ++++D+D Y++IN  LG   GD +L
Sbjct: 169 MHHDPMTGLDNLSALIPGLMEA-QRAADEDGRCAALLLLDLDDYQRINRGLGYDAGDMLL 227

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLE 649
               +R+   +   + LAR++ ++F I+      E    +    A  ++ +I  P     
Sbjct: 228 RDTAQRLRGAIADEERLARVASDKFAIVFNAPDREAARDRAQTLARRLQAAIQPPYRYDG 287

Query: 650 REITVTASIGFASWTSSKITSSE------MLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
           + + ++ASIG A +   +  ++       +L+ A+ A+  AK  GGN +   +       
Sbjct: 288 QSVHLSASIGIALYPDERPAATRPHHHSPLLRRADHALTQAKALGGNTLAFHQSAADPTD 347

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+ ++ DL   V N E  L + PI       + G+EALI+W HP  G +  + F+ +A
Sbjct: 348 AERLKLESDLYDGVRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGLVPPATFIPLA 407

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + +I  +  ++L+     ++SW DQ  +   ++ +N++ +   D    +G++  I+ T
Sbjct: 408 ESIGLIHYLGNWVLKAACMQLVSWDDQGIVLE-YVAVNVSPQQFRDPRFVQGVREAIALT 466

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP RI L  +ES++M +P  ++ LL  +  +GI   +DDFGT  S L+YL   P   +
Sbjct: 467 GISPQRIVLEITESLLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLARL 526

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ   
Sbjct: 527 KIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLTEMGCDHIQGWL 586

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           V   L  + + +  + R   ++ T
Sbjct: 587 VCRALPSDELAQRFEARLLHLRET 610


>gi|229916747|ref|YP_002885393.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
 gi|229468176|gb|ACQ69948.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
          Length = 943

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/569 (18%), Positives = 235/569 (41%), Gaps = 18/569 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIR 450
                   +    E        S   + D+     ++   T    TI G      +    
Sbjct: 255 EQQRIENELTDKDELLRRVCEASDTAICDYSYDTSQIEFATGQFQTIFGYTVKQFNAHPN 314

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   I+ +D +      +         +  E+R+     +  W+    + + +  G + 
Sbjct: 315 YWKVVINQDDLERVNQANEQTRH--TTPVHLEYRI-FVGKKQKWIQECRQHLYDETGRVR 371

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +  +  D+TE ++    +L  +  D +T IPNR++    +T ++       ++   +  
Sbjct: 372 GFQALIRDVTEVREQEAEVLRLSEFDPMTNIPNRETMFQSITRLIQT-----DIAFVLFT 426

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +  ++   IN   G   GD+  +    R+  ++    ++  L G+ F +++   +    +
Sbjct: 427 VTFNRIGDINRTFGYEYGDEWRIQTAHRLQRMVPDEAVVGHLDGDTFLVVMPGHHEEEWL 486

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + +       L    +     IG + + +     + +++ + +AM  A   G  
Sbjct: 487 IQIGEQLARLSKHCFQLEPYTVYPNMQIGVSRYPNDAEDETTLIRRSYMAMGRAGKSGAA 546

Query: 691 HVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  +   ++     R  +  DL  A++ +E YL+Y P +     +I G EAL++W+HP 
Sbjct: 547 PISLYASHMNLDELKRFELLRDLPSAIDRNEFYLLYQPKVNAWTGDITGAEALMRWEHPT 606

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
           WG +S  +F+ +AEE  +   +  +++E + R + +  +      I I +N++ K L   
Sbjct: 607 WGVVSPLDFIPLAEESNLFIRLTDYLIEEVFRFLATLPN-----KIPISLNVSPKYLYHE 661

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L    ++   +       I++  +E+  +        +   LR +GI L LDDFG   S
Sbjct: 662 QLFNTFESASERHDVPLHWIEIEVAETSQLDASHHIMSVFSSLRALGIQLALDDFGKGYS 721

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL     +T+K +     G +E +   AI+ S++ +AK     ++ + I    D+  
Sbjct: 722 SLAYLQQFQVNTIKIDRIFGHGVSENKQARAIIHSLVVLAKEFGLDVVVEGIEQMEDLLL 781

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L ++GC  IQ    + P+  ++ L++++ 
Sbjct: 782 LRQIGCKTIQGYLFSPPVREDAFLQMMES 810


>gi|254437955|ref|ZP_05051449.1| PAS fold family [Octadecabacter antarcticus 307]
 gi|198253401|gb|EDY77715.1| PAS fold family [Octadecabacter antarcticus 307]
          Length = 666

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/595 (21%), Positives = 251/595 (42%), Gaps = 25/595 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR 425
           I    ++  L+  V      +  +V    +         E   LA   + D +   D+  
Sbjct: 12  IAVILVLAPLLWQVFRENALLQSYVHDARHEVAATIRQSEHYRLACENASDGLILQDMRG 71

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF---VGYRRGRLQYE 482
             +   P    +  +  G + G  RN L ++   DR      ++     +    GRL   
Sbjct: 72  RIIWCNPAYCKMHCMTPGDVIG--RNPLEFVLPPDRALTPEEIEETDFDIDITEGRLHL- 128

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL-------EGILCNAFQ 535
           F+ + A     W+ + +    +++G     I +  D+TEQ +         + +   A  
Sbjct: 129 FQNQNALGDLFWIQLSVSFHKSADGR-ESAIAVCRDVTEQIERQNQLNEIGQRLEHEATH 187

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR  F   +   L    + D     ++ ID+D +K IND  G + GD VL   
Sbjct: 188 DGLTGVPNRAVFQTFIGDAL---RSGDGAPVGLLHIDLDSFKAINDTHGHSGGDAVLTPT 244

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I + ++  D+LAR+ G+ F ++  +  +   +  F+  + ++I+MP     R + + 
Sbjct: 245 ADVIRQNIRDGDLLARVGGDEFVVVCPNTADLAYLDGFSARLLQAISMPFEWCNRILQIE 304

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCL 713
           ASIG A   S   T+  +L  A+ A+Y AK  G N V  +  +    +    +   +L  
Sbjct: 305 ASIGAAISRSENTTAESLLVQADFALYEAKRAGRNQVALYDQALHDRNTFQSRRAIELAD 364

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++   +   + P + +   +I+G+E L++W HP  G I+  +F+ + +EL ++ A++L+
Sbjct: 365 TIDTGTMDYWFQPTMSIETGQIIGMETLVRWTHPVDGVIAPDDFLPMVKELGLLGALDLW 424

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +           + A    I I  N + + L   +    +   +       +++ +   
Sbjct: 425 SMTAALTQ-KQKLNLAGFSDIGIAFNASPELLSHPDFIRRLIWGVEAAGIDRAQVIIEVL 483

Query: 834 ESVVMGNPERS---RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
           E+   G+   +     ++  L + G  + LDDFG   + LS+L  +    VK +  L+T 
Sbjct: 484 ENTNFGDASETASHAAIIRDLHEAGFQVYLDDFGVGFAGLSHLAKLDVTGVKIDRGLVTN 543

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    I+R I+ ++ ++   +IA+ +      K L  MGC  IQ   ++ P
Sbjct: 544 LLGDATSRKIVRKIVELSNDLGLNVIAEGVEDLATAKALQAMGCSVIQGYWLSPP 598


>gi|328468862|gb|EGF39822.1| hypothetical protein VP10329_14590 [Vibrio parahaemolyticus 10329]
          Length = 719

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 207/438 (47%), Gaps = 18/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT + NR+  L  L   +            V+ +D+D +K IND  G  V
Sbjct: 271 RVEFMAYHDILTSLSNREKLLIDLQEQISTKRA---PALAVLFVDLDDFKHINDNYGHNV 327

Query: 588 GDDVLVSLTRRIGELLK--------FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           GD +LV L+  +   L            + +R+  + F ++    N+     + A  + +
Sbjct: 328 GDKLLVHLSALLRNELPIYIEPDYRPWILASRVGADEFVVVFPCNNSLE-AREIANQIHR 386

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P+ L    I +T S+G A +      +  +L+ + LA   +K RG + +  +  + 
Sbjct: 387 QVLSPLRLDSHNIRLTTSLGVAVYPEFGCNADSLLQLSSLAAQESKRRGKDIMSVYDPAF 446

Query: 700 FRSDRVMI--KEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             + +  +  + +L     + S+  L Y P   L   ++VG+EAL++W+HP+ G I    
Sbjct: 447 DATVKQRLYIERELSRSIHDLSQFELWYQPKFDLKTYQLVGVEALVRWNHPEKGYIGPEL 506

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I  +   ++E   +    W +        I +N++ + +   +L    + 
Sbjct: 507 FIPIAEQNDLILDLGEHLIETAIKQRAEWAEAF-DHDFHIALNLSPRQIYRQDLSLIFEH 565

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +S+   S   I +  +ES++M + E++  +L +L+  GI + LDDFGT  S LSYL  +
Sbjct: 566 FLSQYNVSAKDIHVEVTESLLMDDIEKAHFVLRKLQATGIEVWLDDFGTGYSALSYLQQV 625

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            FD +K + S +  + E     +++R+II MA N+   ++A+ I  +  +  + R+ CD 
Sbjct: 626 NFDGLKIDRSFIAQTQEDNKDDSLVRAIISMAHNLGMKVVAEGIETQTQLALIERLNCDV 685

Query: 935 IQDSHVASPLGFNSILKL 952
            Q   +  P+    +L+L
Sbjct: 686 AQGFFLGKPVPAAQLLEL 703


>gi|295688345|ref|YP_003592038.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295430248|gb|ADG09420.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
          Length = 737

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 212/436 (48%), Gaps = 15/436 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+PNR  F +RL   +D           V+ ID+D++K +ND  G 
Sbjct: 298 EARAKHLALHDGLTGLPNRLLFEERLRQAIDSLDRKRR-PMAVLAIDLDRFKAVNDTYGH 356

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD+++  +  R+  + +  + +ARL G+ FG++     ++   A  A  + K++  P+
Sbjct: 357 AAGDELIRKVGERLASVCRGGETVARLGGDEFGVVASDL-DANGAAIVAERLLKALCGPM 415

Query: 646 N--LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
                   ++ +  +       + I ++E  + A++A+Y AK  G      F  +     
Sbjct: 416 EMSFGVHFVSGSVGVVLVGSEEAHIGAAEAARRADVALYRAKSEGRGRYCFFEDAMDAAL 475

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  ++EDL  A+    + L Y P +   D  +VG+EAL +W HP  G I    F+ +A
Sbjct: 476 KARRALEEDLRTALREGAVRLDYQPQVDAAD-RVVGVEALARWSHPTRGEIPPDAFIPLA 534

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  + + +  ++L+R   D + WR       + + INI+++ +      + +  L+ +T
Sbjct: 535 EDCGLSEEMGRYVLKRALEDSVRWRS------LQVGINISARQMKRAGFVDELAELLRET 588

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++ L  +E  ++G+ E     + RLR++G SL LDDFG  CS LSY+   P D +
Sbjct: 589 GANPRQLALEITEGALLGDGEGVHETVDRLRQVGFSLVLDDFGVGCSSLSYIRRYPIDRI 648

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   G      A++ +I+ +AK +  +++AK +      + L  +GC   Q   
Sbjct: 649 KIDRSFVAPLGHDADSEAVVAAIVRLAKALSLSVMAKGVETLAQREILKAIGCAQAQGFL 708

Query: 940 VASPLGFNSILKLLKE 955
            + P+  ++I  L+ +
Sbjct: 709 FSPPVSADAIDALMAQ 724


>gi|229515886|ref|ZP_04405344.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229347149|gb|EEO12110.1| sensory box/GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 768

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|153826638|ref|ZP_01979305.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149739576|gb|EDM53800.1| sensory box/GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 768

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|39936233|ref|NP_948509.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           CGA009]
 gi|39650088|emb|CAE28611.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with
           PAS and GAF domains [Rhodopseudomonas palustris CGA009]
          Length = 873

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/422 (25%), Positives = 201/422 (47%), Gaps = 8/422 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +S   I   A+ D LTG+PNR    D +      +A        +  +D+D +K IN
Sbjct: 407 ERMESRAQIARLAYFDMLTGLPNRARLRDLIADA--TAACPHGRTVALAFLDVDNFKDIN 464

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD+ LV   RR+ + ++  D++ RL G+ F ++L +     +I      + ++
Sbjct: 465 DTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDEFVVVLPN-REPAEIEPVVARINEA 523

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P  L   ++ ++ASIG + +  +      ++  A+ AMY AK  G +    F     
Sbjct: 524 LMLPFALCNSQVPMSASIGVSLYPDNATDIDSLINQADTAMYRAKRSGRSTYRLFNCDMH 583

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +    +     L  A+ N+ L L Y P IR  D  + G+EA+ +W  P  G +  ++F+
Sbjct: 584 GAAEQRMAYAAALRSALANNRLELHYQPQIRTSDGALHGVEAMARWHDPVLGPVPPTKFI 643

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  + +    R +  WRDQ    P  + +N++  +  +  L   +   +
Sbjct: 644 PLAEECGLIDQIACWSIREACRQMRVWRDQGLEVP-SVSVNLSPINFENAALPTLVADTL 702

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P  + L  +E V   +   +   +  LR+IG+ L+LDDFGT  S L+ L  +P 
Sbjct: 703 ATYHLPPEALMLEVTEGVAQDDRSAAHDTMAALRRIGVGLSLDDFGTGYSNLNRLAQLPI 762

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   M+    +     ++ +++ + +++  +++A+ +      + L+ +GCD  Q
Sbjct: 763 RELKIDRGFMSELETSPTARTVVTTVVRVGQSLALSVVAEGVETTAQFQLLSDLGCDVAQ 822

Query: 937 DS 938
             
Sbjct: 823 GF 824



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 403 DGERQS--LAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
           + ER+     +    D     V   D     + T     ++ G ++    G  I + L  
Sbjct: 123 ELERRKGIELLTSIADRTTRAVLVTDPELKLLYTNAAFTSLFGYSAEDAKGQNIIDLLSG 182

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H N R      L  ++    G  + E  V   +    W+   ++ + N+ G I +   +
Sbjct: 183 RHTNRRT--IAGLKRWIADAEGG-EEEILVYDQNGDEIWISADVKALRNAQGRITQVFAL 239

Query: 516 ANDITEQKKSLE 527
             DI+E ++   
Sbjct: 240 LTDISETRQLRM 251


>gi|159040541|ref|YP_001539794.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
 gi|157919376|gb|ABW00804.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
          Length = 838

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 209/438 (47%), Gaps = 8/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +        A  D LTG+ NR+  LD       LSA        +M++D+D +K++N
Sbjct: 369 ELARVAAEHAYAATHDALTGLANRRRLLD--EGAGGLSARHAEGVTALMLVDLDHFKEVN 426

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD VL+ +  R+    +  D++ARL G+ F ++L            A  +  +
Sbjct: 427 DTLGHAAGDQVLIRVADRLRATAQPTDLVARLGGDEFAVLLRGLPAPAVAMHRAEILIAA 486

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  P +L    I+V AS G A   ++   +  +L+ A++AMY AK  G      +    +
Sbjct: 487 LREPFDLDGLRISVEASSGVAVAPATGGMAE-LLRRADVAMYQAKRFGQRVFRYAPSRDT 545

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  DL  AV + E  + + PII L    + G EAL +W HP  G I    F+ 
Sbjct: 546 ADIARLTLGGDLPRAVADHEFTVTFQPIIDLGTGAVAGAEALARWHHPTHGVIDPLRFLE 605

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E   ++ A    +L++      SWR      P  + +N++ + LLD +    + A + 
Sbjct: 606 VVERSGLLPAFAGTILDQALVAADSWRKAGFDVP--VAVNVSPRSLLDPDFPCSVLARLR 663

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P R+ L  +E++ +   +    +LGRLR  G+ L LDDFGT  S LS L  I   
Sbjct: 664 AHDLPPDRLVLELTETLTLSQLDIVDQVLGRLRDEGVRLALDDFGTGYSSLSLLSRILVH 723

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +T    + +  A++RS + + ++++ T+IA+ +  E   + L  +GC   Q 
Sbjct: 724 ELKIDRSFVTDMESSPEAAAVIRSTLDLGRSLDLTVIAEGVENEPQRRALWELGCTGGQG 783

Query: 938 SHVASPLGFNSILKLLKE 955
              A P+   ++L+ L+ 
Sbjct: 784 YLFARPMPAGTLLETLRR 801


>gi|153000645|ref|YP_001366326.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|160875279|ref|YP_001554595.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|217973434|ref|YP_002358185.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|151365263|gb|ABS08263.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS185]
 gi|160860801|gb|ABX49335.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS195]
 gi|217498569|gb|ACK46762.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS223]
 gi|315267473|gb|ADT94326.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS678]
          Length = 727

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/583 (20%), Positives = 238/583 (40%), Gaps = 26/583 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   ER SL   A   S  I    ++  ++V       + 
Sbjct: 150 IHLACQMADQLALTLATKHSYDKEERLSLFRCATEQSRQISMLINLHTEKVEYVNQAHSE 209

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G+    + G     L +            L         +   E +   AD   +W+ 
Sbjct: 210 ITGMPREQIIGANIRELAFF-KQHAQLAEQTLAQIFRGEIAK--GEAQFSRADGSRYWLT 266

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + T++      +   A++  LTG+ NR  F   L     
Sbjct: 267 YVLSQFITDRGNHYALVSCEEN-TDEHNYKSELERLAWRCGLTGLHNRTHFNRVLERTNK 325

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                 +L           +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 326 GLLLLVDLVG---------FKRFNDTYGHENGDSLLIEIARRLKHFSEINKATEIARVGS 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + +AMPI +   ++    ++      +S  +    L
Sbjct: 377 DEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKPALAVVDI-ASVASLFAPL 435

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 436 TCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 495

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +G EALI+W HPK G +  + F+ IAE+  MI +I  ++LE   R +  W+      
Sbjct: 496 NTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEAACRQLNLWQHHNAD- 554

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   + LL   L 
Sbjct: 555 -MTMHVNVSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELA 613

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 614 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTVSRESREIVSAIIAMASALN 673

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ A+ +        L +  C   Q    +  L      + +
Sbjct: 674 ISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFI 716


>gi|326402937|ref|YP_004283018.1| putative signaling protein [Acidiphilium multivorum AIU301]
 gi|325049798|dbj|BAJ80136.1| putative signaling protein [Acidiphilium multivorum AIU301]
          Length = 825

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/601 (22%), Positives = 247/601 (41%), Gaps = 24/601 (3%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           D++  A   G           V Q V A       + S        +  + D V  +D  
Sbjct: 245 DVVSYAEPIGEAGGRARRLRGVTQDVTAYRRMQAALRSSEALAFRVLEATRDAVIVFDRG 304

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                     A   G     +   + +           +               ++ E  
Sbjct: 305 GRARFANARAARFAGAGQEIVGNRLADLF----PGTAGHRLAAGAERAAATGAPVRLELS 360

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
             A      W+   + P  +             D+TE+K + + ++  A  D+LTG  NR
Sbjct: 361 W-APTG--RWLEADLYPGEDD------ISLFVRDVTERKLTQDRLIEAAETDSLTGEFNR 411

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F  RL   L   A        ++  D++ + +IND  G  VGD+VL ++ RR+   L+
Sbjct: 412 RGFFTRLEAALTAQAR--GRAMALICADVNYFTEINDSFGHGVGDEVLKTVARRLKSCLR 469

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             DILAR  G+ F I+L            A  +  ++     L +  + ++ SIG A  +
Sbjct: 470 PRDILARTGGDEFMILLNGMRRPGDATTLARRIVGAMEERFELGDLSLRISLSIGLAIAS 529

Query: 665 SSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
            +   ++ + ++A+LA+Y  +    G   V +  +      +  +K DL  A+  SEL L
Sbjct: 530 LADRDAARLCRHADLALYETRTEAPGSFRVFTPAMEQESLRKRQLKRDLADALGRSELEL 589

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + PI+R  D  I   E L++W+HP+ G I  +EF+ +AEE  +I  I  ++L +     
Sbjct: 590 AFQPIVRTADGTIAAAETLLRWNHPEQGRIPPAEFIPLAEESGLIAPIGAWVLRQACAAA 649

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W +        + +N++ + +   +L   ++ ++  T  +P R+ L  +E+V++    
Sbjct: 650 CRWPETVG-----LSVNVSPRQIELADLPALVRDVLEATGLAPRRLHLEITETVLVSRNR 704

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L RLR++G+ L LDDFGT  S L+ L    FD +K + S +           IL 
Sbjct: 705 HYLATLHRLRELGVRLVLDDFGTGYSSLAQLDAFRFDAMKIDQSFLRRIRAETDETPILN 764

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           +I+ MA  I   I  + +  ++ +  + R+G   +Q  +   P+    +  LL    P  
Sbjct: 765 AIVGMATAIRMPITVEGVETQVQLNHVRRLGAACVQGFYFGQPVNEAGMRGLLARGVPAS 824

Query: 961 K 961
           +
Sbjct: 825 R 825



 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           LAV  SG  +WD D+V   +  +     ILG A       I      +H +D D  R  +
Sbjct: 17  LAVEESGTGIWDRDVVTGEIRYSRGWWRILGYAEMPARSHIEAAYARVHPDDLDYVRQTM 76

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIG 514
                 R  R + E R+R AD  + W++ R   +  +  G  +R +G
Sbjct: 77  QDHFDRRTARYEVEHRLRCADGSYKWVLSRGMVVERDIAGRPVRMVG 123



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 60/178 (33%), Gaps = 1/178 (0%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
           W +   M + + +    ++       +  +  +   + +      + ++ +      Q+ 
Sbjct: 102 WVLSRGMVVERDIAGRPVRMVGTTTDITTLRTLAEELAREKAEARFRAEQLAERTREQAA 161

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A   +    W WD+    +  +P+   + G  + +    +          DR        
Sbjct: 162 AHRLAQIGSWQWDLAAGEIRFSPETWQLAGGEARNRPVTLDELRALFPPADRRLLLRRFV 221

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + +   +  +  + R+ A D +   ++    P+  + G   R  G+  D+T  ++   
Sbjct: 222 AGLKAGQ-PVSVQHRLTAFDGRTLDVVSYAEPIGEAGGRARRLRGVTQDVTAYRRMQA 278


>gi|296156880|ref|ZP_06839717.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Burkholderia sp. Ch1-1]
 gi|295892766|gb|EFG72547.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Burkholderia sp. Ch1-1]
          Length = 720

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 206/441 (46%), Gaps = 11/441 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  K + +     A  D+LTG+ NR+    R+  ++  + T       V VID+D++K +
Sbjct: 275 TATKLAEQVADRLARHDSLTGLANRRMLSSRIDNLMCAADTAKCATHFVYVIDLDRFKAV 334

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAM 637
           ND+ G   GD VL ++  R+  L++  D++ARL G+ F ++   E        A  A  +
Sbjct: 335 NDLHGHEGGDTVLCTVAARLRALVREEDVVARLGGDEFAVVARVEGTPAFDNAAQLATRI 394

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESF 695
            + I  PI +   E+ V +SIG A        ++ +L+ A+ AMY AK    G       
Sbjct: 395 GEMIRAPIQIGHSEVEVGSSIGIALCGRDGHDAATLLRAADAAMYRAKSRRCGDFQFFEE 454

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +         ++ D+  AV    +   Y P++ L      G E L +W HP  G++   
Sbjct: 455 SMQEDLRCLAALELDVRNAVAQHAIEPHYQPLVDLRTNRTYGFEILARWTHPARGSVEPD 514

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E L +     L ML R  RD   W        + + +N++   L D  L   + 
Sbjct: 515 TFIPVIERLGLATTFTLSMLRRACRDARLWP-----GRMTLALNLSPHQLADPLLPAQLL 569

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +++S+  + PSR+++  +ES ++G+   ++ ++   R+ GI ++LDDFGT  S L +L  
Sbjct: 570 SVLSEESFEPSRLEIEITESALVGDLPTAKSIIDNFRRWGIRVSLDDFGTGYSSLHHLRE 629

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           + FD +K + S +       +   I+ +I+ ++  +  T +A+ I      + LT+ GC 
Sbjct: 630 LHFDKIKIDRSFIQSMLSDAESAKIVDAILCLSDGLGLTTLAEGIESAELQQALTQRGCA 689

Query: 934 YIQDSHVASPLGFNSILKLLK 954
           Y Q       +    +  LL+
Sbjct: 690 YGQGFLFGKAVRAEEVAGLLR 710


>gi|169795710|ref|YP_001713503.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter
           baumannii AYE]
 gi|213157598|ref|YP_002319643.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|215483196|ref|YP_002325403.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
 gi|301511396|ref|ZP_07236633.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB058]
 gi|301596349|ref|ZP_07241357.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB059]
 gi|169148637|emb|CAM86503.1| Putative diguanylate cyclase/phosphodiesterase [Acinetobacter
           baumannii AYE]
 gi|193077543|gb|ABO12376.2| putative diguanylate cyclase/phosphodiesterase [Acinetobacter
           baumannii ATCC 17978]
 gi|213056758|gb|ACJ41660.1| GGDEF family protein [Acinetobacter baumannii AB0057]
 gi|213986987|gb|ACJ57286.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB307-0294]
          Length = 697

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 113 FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 172

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 173 EKKFGMR-WLDLLPPHIRKRGRVALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 229

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 230 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 289 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 348

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 349 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 408

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 409 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 467

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 468 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFEPLPVSLN 526

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 527 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 586

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 587 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 646

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 647 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 685



 Score = 44.9 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 9   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 +   R R++++ R+    + + W  I I+          N   + ++ I  DI 
Sbjct: 66  NKWLDAIR-LRSRIEFKCRLLHKTHYYRWCKISIQLSKYHESSQENEWFISFLDIDQDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQSLRKDIDIQ 136


>gi|229524975|ref|ZP_04414380.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229338556|gb|EEO03573.1| sensory box/GGDEF family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 768

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|13471767|ref|NP_103334.1| hypothetical protein mll1848 [Mesorhizobium loti MAFF303099]
 gi|14022511|dbj|BAB49120.1| mll1848 [Mesorhizobium loti MAFF303099]
          Length = 699

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 123/562 (21%), Positives = 225/562 (40%), Gaps = 16/562 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +     R  LA+  SG  +W +DI   +         + G+ + +       W  
Sbjct: 132 AAEAALEQVTMRFRLALAASGTGIWHYDIATHKSYWDARTREMFGVVADADEVAADLWHS 191

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           ++H +D++              G    ++R+   D +   +   +R ++ + G   + +G
Sbjct: 192 FLHPDDKEATERAHWPS-PGSNGVTASQYRIVKRDGEIRHIESLVRYVA-AAGAAGQILG 249

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DITE K   + +   A  D LTG+ NR +F   L   +        +   V  +D+D
Sbjct: 250 TVRDITEDKLREQELAFAARHDALTGLWNRAAFDRLLADHIAK-----GVPLAVFYVDLD 304

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND  G A GD  L S+   IG  L      ARL G+ F +++   + +      A
Sbjct: 305 YFKALNDFAGHAAGDLALKSVAAGIGRCLPPSAHAARLGGDEFALLVPHCDAAQAERLAA 364

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +    +  + L      + ASIG A       T ++ L  A+ A Y AK  G +    
Sbjct: 365 AILAAVRSADLGLAATARRLAASIGIAIVNDRATTVADALACADDACYAAKAAGRDRFAV 424

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWG 750
           F   +     +   +  D   A+E+  L L    I R     +E   +E L +       
Sbjct: 425 FSAEAATGGLNAARLAADTVDAMEDGRLKLFGQEIHRLGRPWQENRHVEVLARLVGRGGK 484

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I  SEF+  AE   +   ++ +++      +           I +  N++++ L D  L
Sbjct: 485 LIPPSEFIPAAERFGIAARLDRWIIRTA---LSRHGAAMKSGAITLGFNLSAQTLSDPGL 541

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + + ++I +T    S I    +E+  + N + +   + + R+    ++LDDFG   S  
Sbjct: 542 WDFVDSIIEETGAPHSGIGFEITETAAVTNFDAAETFVRKARERRCKVSLDDFGAGMSSF 601

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL   P D +K +GS +    E      I+ +I  +A+++  T++A+ I     +  L 
Sbjct: 602 EYLRRFPVDAIKIDGSFIEHMAESRFDREIVSAISGIARSVGCTVVAEKIEQAETLGILQ 661

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            MG D+ Q   +  P     I+
Sbjct: 662 TMGVDFGQGFLLHRPEPLEQIV 683



 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + A+  +   VWDWD+       +   A +LG     +      WL   H +DR+    
Sbjct: 14  WAKALERAHLGVWDWDLRSGDCFYSATWARMLGYEEDELANTSDLWLQLTHPDDRERALA 73

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQKKS 525
             D  +      ++ E R++     + W++ R   +   ++G  LR +G+  DI++QK +
Sbjct: 74  SGDRHIAGLTDAIETELRLKHKLGHWVWVLDRGGIVESGADGRPLRLMGVQTDISKQKAA 133

Query: 526 LE 527
             
Sbjct: 134 EA 135


>gi|134096715|ref|YP_001102376.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291009620|ref|ZP_06567593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133909338|emb|CAL99450.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 699

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 235/565 (41%), Gaps = 18/565 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           S+ +             +   +  +D     +     +  + G     + G        +
Sbjct: 136 SRRLEQSSRLFRDLFSLTPVALGLFDRHGTVLDCNMAMCELFGHLPERLRGSHAT---AL 192

Query: 457 HINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
              D      ++++F       G    E R+  +D +  +  + I      +G+   ++ 
Sbjct: 193 IPQDAPAREQLVEAFARGVPPDGESVQECRLVRSDGEPVFCELHIARAEEDSGEP-FWVV 251

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D+T++ +  E +   A+ D LTG+ NR +  D L             R  V+  DI 
Sbjct: 252 VFEDVTDRYREAESLRYWAYHDELTGLWNRAAIPDLLADA-------HPDRAAVLYCDIR 304

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            + ++N+ LG   GD+VLV+L RR+ E L     +AR +G+ F +I      +  IA  A
Sbjct: 305 NFSRVNESLGYPAGDEVLVALARRLEEHLPEGWPVARAAGDEFAVICPDVEEAGGIAAVA 364

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +   I +    I V++ IG A  + S     ++++ A  A+  AK  G   +  
Sbjct: 365 TTVSRVMHAAIEVRGERIQVSSMIGAAVASESGGRGEDLVRLAMSALVRAKKTGRVGISM 424

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
              +       R+ ++ +L  A++  EL L Y P +   D  I   EALI+W HP+ G +
Sbjct: 425 AEPALIDSLEGRLRLEAELRRALDRDELTLHYQPQV-GADGTIRSAEALIRWPHPQRGLL 483

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ IA++  M+  I+ +++ R  RD   W    +  P+ + +NI           +
Sbjct: 484 HPDVFLPIADQNGMMPDIDRWVVRRALRDAARWPAPRDGEPVAVSLNIGELMPGYPIFTD 543

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  +++T    SRI +   E+ ++  P R R  +  L   G+   +DDFGT  S LS 
Sbjct: 544 LLERAVTETGIDWSRIIVELVETAIVDLPSRVRAGMAELTGRGVRFAVDDFGTGYSSLSR 603

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +   P   +K + + ++    +     +++++  +A  +  + +A+ +        L  +
Sbjct: 604 VRDFPAQIIKVDRTFVSEITTSPYDFVVVKAVTDLAGALGCSCVAEGVETVGQFDRLRSI 663

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
             +  Q    +  +    +  L++ 
Sbjct: 664 PIERYQGWLFSKAVPSAELADLIEA 688



 Score = 43.8 bits (102), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 14/141 (9%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V+  D      +       I+G  +  + G             R             + 
Sbjct: 25  AVFTLDPDGLVTSWNLGAELIIGATASEVIGRSAAVFHT--AEQRAEGHPEWVLEQARKL 82

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT------EQKKSLEGIL 530
           G    E      D    W  +    + +S G++  Y  +A D T      EQ        
Sbjct: 83  GSHVDEGWRVRKDGSLFWAHVVTTALWSSKGELRGYAKVARDDTVVHNKLEQSSRRLEQS 142

Query: 531 CNAFQD--NLT----GIPNRQ 545
              F+D  +LT    G+ +R 
Sbjct: 143 SRLFRDLFSLTPVALGLFDRH 163


>gi|254508093|ref|ZP_05120219.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           parahaemolyticus 16]
 gi|219548928|gb|EED25927.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           parahaemolyticus 16]
          Length = 628

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/444 (23%), Positives = 198/444 (44%), Gaps = 7/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  +   +  +   D LT +PNR +  D L     +++ +D+ + T++   +  
Sbjct: 186 LKEIEQRTAAESHLDFHLHYDPLTKLPNRITLADDL--AKQMASLEDDEQITLIYFSLRN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N   G   GD +L SL++RI   L     LAR+ G+ F +                
Sbjct: 244 FKFVNASYGYMFGDQILSSLSQRICHKLPKKWKLARIVGSDFVLAAQHLRTPELQEKAIE 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +   P N+    I +  ++G A +      S  +++ A  AM   K  G      +
Sbjct: 304 RITNACTQPFNVNGMSINLQCNLGIAVFPMDATDSFSLIQRACSAMSEGKKEGLQVAYFN 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                   +R+ ++  L  A+EN+EL + + PII      +I+G EAL++W++P  G +S
Sbjct: 364 AAAQKAAEERLRLESHLSKALENNELEVHFQPIICLKQGGKIIGAEALLRWNNPILGQVS 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  +    W   +      + INI+     +    + 
Sbjct: 424 PDRFIPLAESNGQIIEIGYFVLHQALKQAAEWHRASPH-SFKMAINISPIQFQEQHFVQH 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q +I         I+L  +E +++ + E ++ +L +LR+ G+S++LDDFGT  S LSYL
Sbjct: 483 LQDIIDLYQLPAKCIELELTEGILLQDEEYAQNILAQLRQFGVSISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S +      +    + R+II MA  +   +IA+ +        +    
Sbjct: 543 QKYAFDTLKIDRSFINQLEHNQHNRELTRAIIAMAHKLNMMVIAEGVEELYQEDFIRTEE 602

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+Y Q       +  +   + +  
Sbjct: 603 CNYAQGFLYGKAVPADEFTQQMTN 626


>gi|325981579|ref|YP_004293981.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Nitrosomonas sp. AL212]
 gi|325531098|gb|ADZ25819.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Nitrosomonas sp. AL212]
          Length = 1029

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/581 (19%), Positives = 246/581 (42%), Gaps = 40/581 (6%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSL----AVLGSGDIVWDWDIVRDRVTTTPDIATI---- 437
             ++ +  +    + +    ER+       +      +   D  R      P    +    
Sbjct: 460  SLEELKVSEKHQRELRILAEREQSRMGALLAAMNIGILFEDNERRVEYVNPAFLRMWLVN 519

Query: 438  -----LGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                  GL + + +      +    H +       IL +       R + E     +D  
Sbjct: 520  EHDDLTGLPTKTVLERSTERFAQPTHAS--KFVLNILHTH--EISERFELEL----SDG- 570

Query: 492  FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
               +     P++++   IL  + I  DIT+++++ + +L  A +D LTG+ NR  F ++L
Sbjct: 571  -RMLTQLSYPVTDTEERILGRLWIYEDITQERQTAQQLLYLAERDPLTGLYNRHRFQEQL 629

Query: 552  TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
             +++         +  ++  D+D +K IND  G + GD VLV     I  +++  +I AR
Sbjct: 630  ESLIANCLRSRG-KFALLYFDLDDFKYINDTYGHSAGDTVLVRAAGEISSIIRQIEIFAR 688

Query: 612  LSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITS 670
            L G+ F  IL S      I      +  +I+  P+    R I +T+S+G A +     T+
Sbjct: 689  LGGDEFA-ILSSIQPDEDINVLPSRIITAISSIPLRFHGRNIRLTSSLGVAIFPEHGETT 747

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHP 726
             +++ +A+ AMY AK +G N    +  +         R+  +  +  A+E+    L +  
Sbjct: 748  EDLIAHADTAMYQAKTQGKNTWAIYDSTRDDSEVMLQRMTWRSRIAQALEHDLFELHFQG 807

Query: 727  IIRLMDEEIVGLEALIQWDHPK--WGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            +    D+ +  +EALI+    +     I   +F+ IAE+   I  I+ ++++     + +
Sbjct: 808  VYLTSDKMLSHIEALIRMRDLERSGHLIMPGQFIPIAEKSGQILDIDRWVVKECIEKLAN 867

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
              +        + INI+ +   +  L   ++ L+ +    P R+ +  +E+  + + + +
Sbjct: 868  DLNMPP-----LAINISGRTFDEPSLPLYIRKLLLERGVEPGRLIIELTETAAVSDIQDA 922

Query: 845  RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSI 902
            +  +  + + G  + LDDFG+  S   YL Y+  + +K +G  ++           ++++
Sbjct: 923  QRFIESIHQSGCKVCLDDFGSGFSTFGYLKYLGVEILKIDGLFISDLHNNRDNQVFVKAM 982

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            + +A  +    +A+ +  E   + + ++G D +Q  +   P
Sbjct: 983  VDVAHGLGKITVAEYVEDEDTFRMVKKLGIDLVQGYNFGRP 1023



 Score =  130 bits (326), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 108/325 (33%), Gaps = 16/325 (4%)

Query: 201 LLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA 260
           LLA  L +   +   S L          L    I   +L                     
Sbjct: 134 LLAFTLIVPGCMLLPSSLGVLALFISDNLIADQIQQAWLGWWFG---------DIVGIWI 184

Query: 261 LSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL 320
            +  ++++   Y            +    I  I +   +++       ++  + L+   L
Sbjct: 185 FAPLILVWWTNY---KNKPNSPETLNAEFIFIIIVCVVIAWVVFGSAFALGDLQLSLAFL 241

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG-LVLIV 379
            +   I      G   AVL      +I  W     +     ++  +     +    V   
Sbjct: 242 VFPPLIWACLRLGTFDAVLAATTISMIAAWGTAQGLGP--FVNGSLTLDHFILCVFVATN 299

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +LI  ++     A     + + +   R  LA+  + + +WD ++    V   P+ A +LG
Sbjct: 300 MLIACSITGLQTARKNAHRDLMNSELRLRLALTAANEGLWDLNVQTGEVLVNPEYALMLG 359

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            A  +      +W   +H +D++    I   ++   R   Q EFR       + W++   
Sbjct: 360 YAPDTFVETNSSWRERLHPDDQERVGRIYQEYISGLRDDYQVEFRQLTQQGTWKWILSHG 419

Query: 500 RPM-SNSNGDILRYIGIANDITEQK 523
           + +  +     LR +GI  DI E+K
Sbjct: 420 KLVEYDDQNRPLRMLGIHTDIEERK 444


>gi|77362324|ref|YP_341898.1| GGDEF family nucleotide cyclase/hydrolase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877235|emb|CAI89452.1| putative unknown membrane associated protein, GGDEF family of
           nucleotide cyclase/hydrolases [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 636

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 213/426 (50%), Gaps = 18/426 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           +QD LT + +R +++  +   +      +NL+  ++ ID+D +KK+ND  G + GD++LV
Sbjct: 183 YQDKLTLLIDRHAYIKHIDRQISQVNI-ENLKCALLFIDLDGFKKVNDSFGHSFGDEILV 241

Query: 594 SLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +  R+  +++   +            L+RL G+ F I + S  +  ++ D A  +   +
Sbjct: 242 QVATRLANVIRHNKLNNINPANQLEQNLSRLGGDEFSIFIESVESEAQVLDIARNVLNEL 301

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
                L  + I ++ASIG A +  S  T   +L+ A++AMY AKH G    + +      
Sbjct: 302 EKDFVLGNKIIKISASIGIAKYPESASTPQALLQLADVAMYRAKHDGKGIFKVYSPEMGN 361

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  + E+L LAV   + YL + PI+ + D  I   EAL +W+H   G IS  EF+ 
Sbjct: 362 KMRRYHYLLEELRLAVARKDFYLNFQPIVHVEDCMIDYFEALTRWNHSIEGMISPVEFIP 421

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  +++    R + +W +      + I +N++   L    + + + A ++
Sbjct: 422 IAEESNLILELGDWIMLEACRQMAAWHNAGLR-KVRISVNVSGVQLKHRSIYDWVMATLT 480

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           KT  SP+ + L  +ES ++         L +LRK GI++ +DDFGT  S LS L  +P D
Sbjct: 481 KTGLSPNSLMLEVTESTLIKADSLIIKELEKLRKEGITIAIDDFGTGFSSLSTLADLPID 540

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +T + + +    IL++I  + + +   I+A+ +      + + R+G   +Q 
Sbjct: 541 VIKIDRSFITQANKSKKYLDILKTICELGQKLGLKIVAEGVEEPAQFELVKRIGVSSVQG 600

Query: 938 SHVASP 943
             V+ P
Sbjct: 601 YLVSRP 606


>gi|323528484|ref|YP_004230636.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323385486|gb|ADX57576.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 475

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 204/431 (47%), Gaps = 9/431 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                +F D+LTG+ NR     R    L  +         ++V+++D + +IND+    +
Sbjct: 38  HCAHGSFIDSLTGVYNRAYATGRAQQWLRSAQA---ACVAMLVVNLDGFSRINDIADYDL 94

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L S+ +R+   +   D+LAR+ G+ F I+     ++  +  FA  +      P  +
Sbjct: 95  GDRLLRSVAQRLAGTVAANDLLARIGGDEFVIVTDGHRDAPALPAFAQQLLALFVEPFVI 154

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
             RE  V+AS+G A        ++ ++++A  AM  AK  G   +  F      + +   
Sbjct: 155 AGREYRVSASVGVALSNGDVRDAALLMRDAGAAMRRAKTYGPGSLRFFTRDMKEAAQRRF 214

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I++ L  A++  E  + Y  ++     EI+G+EAL++W   + G+++ +EF+ IAE+  
Sbjct: 215 AIEDLLRDALDAGEFRVAYQAVVDAASREILGVEALLRWTSSELGDVAPAEFIPIAEQAG 274

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +++AI  ++LE+    +  WR     P + + +NI+     +  L + + A ++ T   P
Sbjct: 275 LMEAIGDWVLEQACAQVADWRWSIA-PGVTVSVNISPVQF-NERLVQHVAACLANTGLQP 332

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S ++L  +E ++M +       +  L K+G+ LT+DDFGT  + +SYL       +K + 
Sbjct: 333 SALQLEITEGMLMPDDPAVCATMSELVKLGVKLTIDDFGTGYASMSYLKRFALHGLKIDR 392

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G    +   AI  +++ MA     ++ A+ +  E     L  MGCD +Q      P
Sbjct: 393 SFVAGLPGDKDCAAIAHAVVKMAHACGMSVTAEGVETEEQASALHAMGCDTLQGYLFGRP 452

Query: 944 LGFNSILKLLK 954
                    L 
Sbjct: 453 GSAADYAVKLT 463


>gi|152965578|ref|YP_001361362.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360095|gb|ABS03098.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 537

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 125/429 (29%), Positives = 215/429 (50%), Gaps = 11/429 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +++++LE  +  A  D LT + NRQ F DRL   L       +    V+ +D+D +K +N
Sbjct: 82  DRQEALEAAMRQALHDPLTDLGNRQLFTDRLQHALA---RRGSKACAVLYLDLDGFKTVN 138

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD VLV ++ R+   ++  D +AR  G+ F ++    ++ L  +  A  +  S
Sbjct: 139 DTHGHGVGDTVLVEVSHRLRAAVRPEDTVARFGGDEFAVLCEDLSDELNASRIADRVVSS 198

Query: 641 I-AMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           I   PI     R++T+T S+G A     +  +S++L+ A+ A+Y AK  G    E F   
Sbjct: 199 IANHPIEFGDGRKLTITPSVGIALA-RDEADASKLLRRADAALYRAKESGKARSELFDER 257

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 D +  ++DL LAV   +L L Y PII L D  + G+EAL++W HP+ G +  S+
Sbjct: 258 MQAQAVDALQTEDDLALAVSQGQLRLHYQPIIDLRDGHVQGVEALLRWQHPRRGLLQPSD 317

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  I  +++    R +  W        + I +N++ + L + EL + +  
Sbjct: 318 FVPLAERSGLIVDIGKWVIAEAWRQLEEWYSTIEDCHLTIAVNVSRRQLANAELLDAVAT 377

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
               T  + S + +  SE +++ +       L  LR +G+ + +DDFG   S L +L  +
Sbjct: 378 N-QPTGPAGSALLVEVSEDLLVADANAGFSTLHALRMMGVRVAVDDFGAGVSSLKHLQTM 436

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D VK +   + G   +R   A++  II MAK++   ++A+ +     +  L R+GCD 
Sbjct: 437 PIDHVKVDRHFIAGLGRRRQDEAVVAGIIGMAKSMGVGVVAEGVESHEQLDALRRLGCDS 496

Query: 935 IQDSHVASP 943
            Q   +  P
Sbjct: 497 AQGFLLGRP 505


>gi|297581894|ref|ZP_06943815.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
 gi|297533988|gb|EFH72828.1| sensory box/GGDEF family protein [Vibrio cholerae RC385]
          Length = 768

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|332850253|ref|ZP_08432601.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332871246|ref|ZP_08439815.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
 gi|332730828|gb|EGJ62137.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013150]
 gi|332731655|gb|EGJ62939.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6013113]
          Length = 694

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 110 FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 169

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 170 EKKFGMR-WLDLLPPHIRKRGRVALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 226

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 227 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 285

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 286 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 345

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 346 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 405

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 406 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 464

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 465 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFEPLPVSLN 523

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 524 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 583

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 584 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 643

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 644 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 682



 Score = 44.9 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 6   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 62

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 +   R R++++ R+    + + W  I I+          N   + ++ I  DI 
Sbjct: 63  NKWLDAIR-LRSRIEFKCRLLHKTHYYRWCKISIQLSKYHESSQENEWFISFLDIDQDIQ 121

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 122 EQQSLRKDIDIQ 133


>gi|15640104|ref|NP_229731.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587676|ref|ZP_01677439.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121727787|ref|ZP_01680863.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|147674064|ref|YP_001218342.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|153818211|ref|ZP_01970878.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822127|ref|ZP_01974794.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229508356|ref|ZP_04397860.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229508962|ref|ZP_04398452.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229517076|ref|ZP_04406522.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229606631|ref|YP_002877279.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254851459|ref|ZP_05240809.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
 gi|9654468|gb|AAF93250.1| sensory box/GGDEF family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548117|gb|EAX58192.1| sensory box/GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121629911|gb|EAX62323.1| sensory box/GGDEF family protein [Vibrio cholerae V52]
 gi|126511240|gb|EAZ73834.1| sensory box/GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126520333|gb|EAZ77556.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|146315947|gb|ABQ20486.1| sensory box/GGDEF family protein [Vibrio cholerae O395]
 gi|227011926|gb|ACP08136.1| GGDEF/EAL family protein [Vibrio cholerae O395]
 gi|229346139|gb|EEO11111.1| sensory box/GGDEF family protein [Vibrio cholerae RC9]
 gi|229354079|gb|EEO19012.1| sensory box/GGDEF family protein [Vibrio cholerae B33]
 gi|229354629|gb|EEO19551.1| sensory box/GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229369286|gb|ACQ59709.1| sensory box/GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254847164|gb|EET25578.1| sensory box/GGDEF family protein [Vibrio cholerae MO10]
          Length = 768

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|167036301|ref|YP_001671532.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166862789|gb|ABZ01197.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 554

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 215/439 (48%), Gaps = 9/439 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   L   L     ++     +  +D+D ++ 
Sbjct: 110 VRERSVLVATLQRLAEQDPLTGIANRQGFQALLNARLA---ENEGRGVALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D LARL  + F +++ +  ++ +    A  + 
Sbjct: 167 VNDALGHQSGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWIDGESLLLGCSLGLAHARAQ-SGADPLMWHAHIAMRQAKGSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRMNLADGRIVGLEALVRWRHAERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  ++    P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALCERGL-EPLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LILEHGVDARWLEFELTETAVMRRNELVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+   ++ ++I +A N+   ++A+ +  E  +  L   GCD 
Sbjct: 465 PITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVEREEQLALLRGFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLL 953
           +Q   V+ PL    +++ L
Sbjct: 525 VQGFLVSKPLPVGELIEFL 543


>gi|288917916|ref|ZP_06412276.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288350705|gb|EFC84922.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 804

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 220/443 (49%), Gaps = 15/443 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + L      A  D+LTG+ NR+ FL+RL+ +     +       ++++D+D++K+IND
Sbjct: 342 EVQQLAESRALAHTDDLTGLTNRRGFLERLSQM--EMNSGQGDSSALLLLDLDRFKEIND 399

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  +GD +L+ +  RI   L+  D+ ARL G+ F ++L    ++      A  + +++
Sbjct: 400 SFGHHLGDALLIEVGARISGALRPGDLQARLGGDEFAVLLED-ADADAARLVAERVLQAL 458

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           + P  +    + V ASIG A +    + +  +L+ A++AMY AK  G   V  +R  +  
Sbjct: 459 SGPFEVGGMTLHVGASIGAALYPEHALDAQTLLQRADVAMYGAK-AGRTGVGYYRPGAEV 517

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              + +   E L  A+   ++ + Y   + L      G+EAL++W HP  G ++   F+ 
Sbjct: 518 DTLLRLDMIESLRAALGTGQIEVHYQVKVDLGSGSPHGVEALVRWRHPTRGLLAPDAFVP 577

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +++ + + +LE        W D      + + +N+A+ DLLD    + ++ L+ 
Sbjct: 578 LAEQAGLMRKLTIEVLELALAQCRRWWD--GGVDMTVAVNLAASDLLDRAFPDQVRGLLH 635

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    PS +++  +E+ +M +  RS  +L  LR++G+ + +DD+GT  S L+YL  +P D
Sbjct: 636 QYGLPPSALEVEITETTLMRDLVRSAAVLDELRELGVKIAVDDYGTGYSSLAYLQELPVD 695

Query: 880 TVKFNGSLMTGST-------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +K + S +T          +K  AI+RS I +A  +   I+ + +     + +L   GC
Sbjct: 696 ILKLDKSFVTRLEDGSERRRQKAEAIVRSTIGLAHALGLRIVVEGVDSASVLAKLRSYGC 755

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D  Q   +  P     +   L  
Sbjct: 756 DLAQGYFLGQPRPATELTATLSA 778


>gi|254225591|ref|ZP_04919200.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
 gi|125621911|gb|EAZ50236.1| sensory box/GGDEF family protein [Vibrio cholerae V51]
          Length = 768

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 106/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELGKALKETESQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L R
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQR 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|113968784|ref|YP_732577.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|114049076|ref|YP_739626.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113883468|gb|ABI37520.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-4]
 gi|113890518|gb|ABI44569.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 856

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/564 (20%), Positives = 217/564 (38%), Gaps = 19/564 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER    +    + V   DI    +   P   ++L +AS    G  
Sbjct: 290 ASRVNSLLARIYQQKERGKTTLESIAEAVILTDIDAKVIYMNPKAESLLDVASCYAVGQS 349

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L  +        + +              + ++  A      +   I  + N + +I
Sbjct: 350 ---LASLLKAGEQLNQAVFQCMRLGETTPQVAKIKLLTA--TPRIIERSISNVLNHDKEI 404

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +  DIT+++     +   A  D +TG+ NRQ+F ++L      +         V 
Sbjct: 405 TGTVVVLRDITQEELLKRQLQKRANFDGITGLLNRQAFEEQLPQFAGQAKR-----LAVC 459

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G   GD +L  + R I   L    +LARL G+ FG+++        
Sbjct: 460 YLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQALLARLGGDEFGLVICDSTALAV 519

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + +     ++       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 520 AQQLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINALELLKDADIACIAAKAKGT 579

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI       +   +E L++ 
Sbjct: 580 NQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEILLRI 639

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +             I IN++   
Sbjct: 640 QEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNPQLWPDH--CISINLSGNS 697

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             +    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 698 LGAEGMVEYIAQQQHIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDFG 757

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 758 SGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 817

Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946
            I  L  +G +Y Q   +  P   
Sbjct: 818 IIDRLQVIGINYAQGYAIGRPQPL 841


>gi|327188106|gb|EGE55329.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 435

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 217/430 (50%), Gaps = 10/430 (2%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LTG+ NR    +++   +      D    T+ + ++D +K IND+ G + GD++
Sbjct: 1   MAYTDPLTGLGNRNRMREKVLQ-ISAERASDPAPFTIGIANLDSFKPINDLFGSSAGDEI 59

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +  R+   +    ++ R  G+ F  +L           F   +R+ ++ P +L +R 
Sbjct: 60  LCQVAHRLKACIPDGAMVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPYDLGDRN 119

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKE 709
           + ++AS GFA +  +     E+LK+AE A+Y +K RG   +  +     +  +    +++
Sbjct: 120 VRLSASFGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKRATQLEQ 179

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S   F+ +AEE   I A
Sbjct: 180 ALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPGVFVPLAEERGFIDA 239

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  +L + A   +SW  +     +F+  N++S  L+D      + +++ +  + P R++
Sbjct: 240 LSETLLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSGSILSILGRVGFDPHRLE 294

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+ VMG+ + +  ++  LR  G+ ++LDDFGT  S L  L    FD +K + + ++
Sbjct: 295 LEITETAVMGSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKIDRAFVS 354

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                R +  I+++I+ M   +E  ++A+ I    +  +L  +GC   Q  H   P    
Sbjct: 355 RINSDRASEHIIKAILAMCDGLELEVVAEGIEDYAEAVKLRTLGCGMGQGYHFGRPADGI 414

Query: 948 SILKLLKERF 957
           + L+ L E +
Sbjct: 415 ATLRFLHENY 424


>gi|327482980|gb|AEA77387.1| Sensory box/GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 718

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 217/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G   +   + 
Sbjct: 158 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADAMLGH--HIRDFY 215

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 216 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 271

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 272 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 330

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 331 KVLNDTAGHDAGDGAIQFCASMLEDVLSFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 390

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 391 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 450

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 451 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 510

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 511 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 569

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 570 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 629

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 630 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 689

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 690 IGVDYAQGYLFSRPQPIADWVAEQLKEK 717


>gi|330937631|gb|EGH41548.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 489

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 214/430 (49%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + ++    +++ +    
Sbjct: 57  QLAHNALHDNLTGLPNRALVMERLGSSIAADRA-----VALLSLSVENLATVSESVSAEG 111

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L  + +R+   L+  D +ARL  N F ++L + +++  +   A A+++ ++ P  +
Sbjct: 112 VDQLLRQVGQRLQSNLRAGDTVARLGANEFLLLLDNTSSAGAV-GMADAVQRLLSEPQRI 170

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVM 706
              E+ +   IG   +     ++ E+L  A +A    A   G   +           ++ 
Sbjct: 171 DNHELELECCIGITVYPEHGDSAQELLNRAVIARKDAAFLPGRLQIYQDGRDLAHQRQIT 230

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++G++S +EF+++AE    
Sbjct: 231 LIRDLRKAAQNGELMLHYQPKLDIRQGYVRQAEALLRWAHPQFGSVSPAEFIVLAERTGS 290

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 291 IYLLTNWVIEEAMRQLAEWRKRGLV--LQVSVNISADDLLGDDLVGYVVKLLKQYAVPAE 348

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 349 QLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 408

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 409 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 468

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 469 TASAFEAWIA 478


>gi|296163641|ref|ZP_06846369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
 gi|295886118|gb|EFG66008.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. Ch1-1]
          Length = 604

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 129/611 (21%), Positives = 261/611 (42%), Gaps = 29/611 (4%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
              N I  P       +I  L  F   +H       S+    +       V+G+ D++  
Sbjct: 1   MEANRITAPRRGSLRTVIDRLRAFGRREHGKPQTAASRAAQLEQ------VVGAVDLLAH 54

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D     +  +      +G     +     +    +   D      +L            
Sbjct: 55  VDDELRFLYVSDASLRFIGYHREYLETITLH--DLVAPADVPRLDALLTRAAASGNVEKA 112

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-DNLT 539
               +++     + + + +R + +S+     Y     D++  + + E  L  A   D LT
Sbjct: 113 TLGLIKSL---TYPITVELRVVRSSHDGADGYAIAGFDVSAWRATEER-LTQALHLDRLT 168

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            + N+ + +  L      +         ++++D+D Y+++N  LG   GD++L   +RRI
Sbjct: 169 NLANQSALIPVLLDAQQQADAH-GTPAALLLLDLDDYQRVNRALGYDAGDEMLRDTSRRI 227

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKI----ADFAIAMRKSIAMPINLLEREITVT 655
             +    + +AR++ + F I++    +           A  +  +I  P     +++ ++
Sbjct: 228 LNMTSPAETVARVASDEFAILVKPAASRTDAAAAAETLARRLLTAIQQPYVFNGQQVHLS 287

Query: 656 ASIGFASWTS--SKITSS----EMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMI 707
           ASIG A +        ++     +L+ A+ A+  AK  GGN +  +    +   ++R+ +
Sbjct: 288 ASIGIALYPDVRHANDTAAHDTHLLRWADHALLQAKAAGGNTLAFYVPDDNPADAERLKL 347

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL   V N E  L + PI       +VG+EALI+W HP  G +  S F+ +AE + +I
Sbjct: 348 EADLYDGVRNGEFSLHFQPITSSRTHGVVGVEALIRWSHPVHGLVPPSMFIPLAESIGLI 407

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L+     +I W  +      ++ +N++ +   D    + ++  I  T   P R
Sbjct: 408 NFLGNWVLKVACMQLIQWDAKGICLQ-YVAVNVSPQQFRDPRFKDAVREAIELTGIDPRR 466

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +    +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   +K + S 
Sbjct: 467 LVFEITESLLMHDPAHAKVLLEDLTAMGIRFAVDDFGTGYSSLAYLQRFPLAKLKIDRSF 526

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGCD+IQ   V   L 
Sbjct: 527 VENLLTSRNDQAIVSAVVGLAQTLDLELVAEGVETEAQRTLLTEMGCDHIQGWLVCKALP 586

Query: 946 FNSILKLLKER 956
            + + +  + R
Sbjct: 587 SDELAERFEAR 597


>gi|224823752|ref|ZP_03696861.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
 gi|224604207|gb|EEG10381.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Lutiella nitroferrum 2002]
          Length = 717

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 130/576 (22%), Positives = 241/576 (41%), Gaps = 13/576 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q         Q +    +     +  +G+ V             P    +LG+++  + G
Sbjct: 148 QQKRQLLSAYQRLDEQRDYYQSLLSSAGEGVIGVSPDGIVRFANPATQNLLGMSAEHLVG 207

Query: 448 PIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                    H +DR                   L  E  +         + +R  PM   
Sbjct: 208 YPIQ--QLFHESDRATDWDSSPFAIACRDNVEVLHEETMLYPPGRPPLPVSLRCSPM--- 262

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G     + I  DI +Q ++   +   A  D LTG+ NR  F   L  +L  +       
Sbjct: 263 GGQQQGLVVIFRDIRQQLETESQLRQQALTDYLTGLLNRNGFTIMLEKVLSHAERSHQGL 322

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              + +D+D++K+IND LG  VGD VL  +  R+   L+  D +ARL G+ F IIL    
Sbjct: 323 GL-LFLDLDRFKEINDRLGHKVGDIVLQQVAERLRGCLRREDHIARLGGDEFIIILEQLE 381

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  + A  A  +  ++  P+ + +  +TV ASIG A++     T + +++ A++AMY AK
Sbjct: 382 SPDRAAYSAQRIIAALEPPLQIDDDTLTVRASIGIATYPDCGRTVTSLIEAADVAMYRAK 441

Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G +    F     +  +  +  ++ L  A+   +L+L+Y P   L +  +VG+EAL++
Sbjct: 442 EEGHHLYHFFTTEMNQRVQERLRREQQLRQALAEQQLFLLYQPQQDLHNGRLVGIEALLR 501

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIAS 802
           W  P      +  F+ + EE  +I A     +E   R   +W  +        + IN+++
Sbjct: 502 WQPPGQPVQPAGAFLPLLEESGLIMAFGERSIELACRQRAAWLVEGWLDSACPLSINLSA 561

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L D++L   +  ++      P+ I+L F E+ +  +  +    L  L  +G+ L LDD
Sbjct: 562 RQLADDKLPGKLDYMLKHYGIPPALIELEFHEAALDQHNTKVIENLHCLGMMGLRLALDD 621

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG++   L+ L   P  T+K   +L+     + +  AI+ +   + + +   ++A  +  
Sbjct: 622 FGSELGELAILRRFPISTLKIGQALIKTLADSPRDQAIITATAQLTRALGIRLLAAGVET 681

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               + L  +G    Q   +A P+    +      R
Sbjct: 682 PAQRELLQALGIPAAQGHSIAKPMTPGELAARFDRR 717


>gi|289668228|ref|ZP_06489303.1| putative signal transduction protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 801

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/586 (17%), Positives = 218/586 (37%), Gaps = 15/586 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 215 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 274

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          +H  D           + + +     E R   AD   
Sbjct: 275 SMANVLFYRPEEL--QACTLAEVMHPEDIKLDS---RGMIDWPKLLQSGELRFLRADGGV 329

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 330 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 389

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 390 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFADVITMQLRPGDWLGRL 448

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M  ++  P +    R +T + S G           +
Sbjct: 449 GGDEFAILLAN-TDLAQAQIVLERMHGTLGQPWSHQGGRPLTPSCSFGVVEIRQGVSDLN 507

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
            ++  A+LA + AK  G N +  F  +     +          +  A+    L L    I
Sbjct: 508 ALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKI 567

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L D   +  E L++        +S  EF+   E   + + ++ ++LE +   + +   
Sbjct: 568 QVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPM 627

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 +   +N++++ +   +  + + AL  +      ++ +  +E+ V+G+ E ++  
Sbjct: 628 HVATLDL-CHVNLSAQSIAQPDFLDFVFALFERYPSLVPKLCMEITETAVIGDLEHAQRF 686

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  +   G  + LDDFG+  +   YL     D +K +   +          A + SI  +
Sbjct: 687 VQSVCARGCHVALDDFGSGMASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQV 746

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +   ++A+ +  E DI  L   G   +Q   +  P     ++ 
Sbjct: 747 GLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEDLVH 792


>gi|115351123|ref|YP_772962.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia ambifaria AMMD]
 gi|219363750|ref|YP_001807776.2| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
 gi|115281111|gb|ABI86628.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria AMMD]
 gi|219363742|gb|ACB63560.2| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia ambifaria MC40-6]
          Length = 610

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 120/549 (21%), Positives = 243/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTATLEGLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D+T  +     +      D +TG+
Sbjct: 121 ICIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVTAWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A +      ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 178 DNLSALVPALMRA-QQAADESGTCAALLLLDLDDYQRINRALGYDAGDTLLRDTAQRLRA 236

Query: 602 LLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 237 LVAPGEQLARVASDKFAVVLTAPNRARASDAADALARRLQAAVREPYVFQGQTVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN             ++R+ ++ D
Sbjct: 297 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHEPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     + G+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVDGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P ++++LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAQAKMLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 596 LARRFEAQQ 604


>gi|119773710|ref|YP_926450.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
 gi|119766210|gb|ABL98780.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 824

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 122/476 (25%), Positives = 229/476 (48%), Gaps = 16/476 (3%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE--------GILCNAFQDNLTGIP 542
           +    +   R + +   D++    +A  +TE+++ LE         +   A  D LTG+P
Sbjct: 331 EIRTRLGTGRVLVSDEVDVMGRAMMA--LTERQQILESDVDSYTRELERLAMLDMLTGLP 388

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           N+   L  L   +       +     + +D+D +K+IND LG   GD++L  +  R+   
Sbjct: 389 NKSMLLHELNKAIACVGRVHDKLAL-LFLDLDAFKRINDALGHNEGDELLKIIASRLANS 447

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D + R  G+ F I+L    +   +      +  S+  P+ L   ++ VT SIG A 
Sbjct: 448 VRSMDTVFRQGGDEFLILLRGIRDEQDVRRVIHKIFASLQQPVVLGNHKLIVTTSIGVAM 507

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720
             S   ++ E++K A+LAMY AK  G ++   F        ++R+M+++D+  A+   +L
Sbjct: 508 CDSPSTSAEELIKYADLAMYQAKDAGRSNFRVFTEDMLHKANNRLMVEQDISSAISERQL 567

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   PI+ L    I G EAL++W HP  G I    F+   EE   I  +  ++L     
Sbjct: 568 MLFLQPIVSLDGGVIKGFEALVRWFHPSRGLIMPGSFIPHIEESDAIIRVGNYVLGEAVD 627

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +   R Q     ++I +N++++  L   L + ++ L++ +   P  + L  +E  V+  
Sbjct: 628 MLKRLRLQGWD-DLYIAVNLSARHYLTPGLSDFIRKLLTASGIPPKCLLLEVTEESVIEQ 686

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898
            +++  ++  L+ +G+ + +DDFGT  S LSYL  +PFD +K +     G  E      I
Sbjct: 687 VDKAMEVMRELKMLGVRIAIDDFGTGYSSLSYLKQLPFDVLKIDRCFTAGVLENGADTHI 746

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + ++I +A ++  T++A+ I  E+  + L   GC+  Q    + P+     +++LK
Sbjct: 747 VTTVIDLAHHLGRTVVAEGIETELQREFLEAAGCELAQGYLFSKPICEERAMEILK 802


>gi|284992457|ref|YP_003411011.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Geodermatophilus obscurus DSM 43160]
 gi|284065702|gb|ADB76640.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geodermatophilus obscurus DSM 43160]
          Length = 878

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 134/622 (21%), Positives = 260/622 (41%), Gaps = 19/622 (3%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
             L+P   +    F    +++T    + +I        VL V+    T         +  
Sbjct: 259 RQLLPHLAMTVACFGAAAVSLTGHRISPVIAVGGSLCAVLAVLHRWLT----AREEQHLG 314

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
             +          V  S D V   D       ++P + T LG  +        + L  +H
Sbjct: 315 TRLRRSEAYFRSLVATSSDAVLILDGDLRVTWSSPTLGTTLG--AADAVPAGADLLELVH 372

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D  +    L    G          R+R  D  +  +   +  +  S+  +   +    
Sbjct: 373 PDDALSLARALQPAAGASAPAGVLRLRLRHTDGGWRHLEAGVSDLR-SDTVVGAVVLHCR 431

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D TE+    + +   AF D +TG+PNR      L   L     D+    ++++I++D   
Sbjct: 432 DTTERVAREQVLEQVAFTDPVTGLPNRAGCERLLEQAL---GADEPGCRSLLLIELDGLD 488

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            + +  G  V  +VLV + RR+   ++  D + R+ G  F ++         +   A   
Sbjct: 489 AVREDAGRDVVTEVLVEVGRRLRATVRSSDAVTRVGGGAFAVLAEG--TLQAVDLLADRC 546

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I  P++       V+A+IG      +  +  ++L  AELA+  A   G      +R 
Sbjct: 547 LSVIEQPLDTGAGVFDVSAAIGVVDL-GAAESVPDLLTRAELAVRAAGAAGTGTALRYRP 605

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +  S    R  ++EDL  A +  EL +++ P++ L +  + G+EAL++W HP+ G +  +
Sbjct: 606 ALGSAAERRARLREDLPGAWDRGELSVLFQPVVSLGERRVTGVEALLRWQHPELGEVPPA 665

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAE   +I  +  + L   A  +++        P+ + +NI++  +    L   + 
Sbjct: 666 EFVPIAERAGVIGELQRWALTHAAAAVLTLPCTGA--PLRLGVNISASHVAARTLVRDVA 723

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A++  T  +P R+ L  +E+ +M   E   + +  LR +G+ + LDDFGT  S L++L  
Sbjct: 724 AVLQSTGLAPERLILEITEATLMSEGEHVAVDIEALRLMGVHVALDDFGTGRSSLAHLTR 783

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + +       K  A+  S++ +A  +   ++A+ +     +  L   GC 
Sbjct: 784 LPIDVLKLDHAFVLRVDRDPKARALCESVVSIAGALGLDVVAEGVETPAQLGALRAAGCG 843

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q   +A P+    ++ +L  
Sbjct: 844 FAQGFLLARPMRPRELVDVLDN 865


>gi|260901038|ref|ZP_05909433.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308110809|gb|EFO48349.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 719

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 208/438 (47%), Gaps = 18/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LT + NR+  L  L   +            V+ +D+D +K IND  G  V
Sbjct: 271 RVEFMAYHDILTSLSNREKLLIDLQEQISAKRA---PALAVLFVDLDDFKHINDNYGHNV 327

Query: 588 GDDVLVSLTRRIGELLK--------FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           GD +LV L+  + + L            + +R+  + F ++    N+     + A  + +
Sbjct: 328 GDKLLVHLSALLRKELPIYIEPDYRPWILASRVGADEFVVVFPCNNSLE-AREIANQIHR 386

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  P+ L    I +T S+G A +      +  +L+ + LA   +K RG + +  +  + 
Sbjct: 387 QVLSPLRLDSHNIRLTTSLGVAVYPEFGCNADSLLQLSSLAAQESKRRGKDIMSVYDPAF 446

Query: 700 FRSDRVMI--KEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             + +  +  + +L     + S+  L Y P   L   ++VG+EAL++W+HP+ G I    
Sbjct: 447 DATVKQRLYIERELSRSIHDLSQFELWYQPKFDLKTYQLVGVEALVRWNHPEKGYIGPEL 506

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+  +I  +   ++E   +    W +        I +N++ + +   +L    + 
Sbjct: 507 FIPIAEQNDLILDLGEHLIETAIKQRAEWAEAF-DHDFHIALNLSPRQIYRQDLSLIFEH 565

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +S+   S   I +  +ES++M + E++  +L +L+  GI + LDDFGT  S LSYL  +
Sbjct: 566 FLSQYDVSAKDIHVEVTESLLMDDIEKAHFVLRKLQATGIEVWLDDFGTGYSALSYLQQV 625

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            FD +K + S +  + +     +++R+II MA N+   ++A+ I  +  +  + R+ CD 
Sbjct: 626 NFDGLKIDRSFIAQTQQDNKDDSLVRAIISMAHNLGMKVVAEGIETQKQLALIERLNCDV 685

Query: 935 IQDSHVASPLGFNSILKL 952
            Q   +  P+    +L+L
Sbjct: 686 AQGFFLGKPVPAAQLLEL 703


>gi|241518364|ref|YP_002978992.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862777|gb|ACS60441.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 904

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/707 (19%), Positives = 277/707 (39%), Gaps = 47/707 (6%)

Query: 265 LIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
            ++                Y   +G      +             I       ++     
Sbjct: 222 SVVVGASATELKDIFPVPVYGAIAGPLIH--VLAAETLLQNRFLRIFDQAPLELLFAVLL 279

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
            ++    +      +       + +  IG ++   +              L+  ++ +  
Sbjct: 280 IVLVICGRSTGIMTMAAAGLTTVIVGEIGAFLLQRQYGLLVGTAVPWSMLLLAWILALNE 339

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V    +     ++   +        +  S D V  +D     V  +     +L +  G+
Sbjct: 340 RVDLGQMLVAVANREARNTRRLMRRIIADSSDGVVAFDGDLRIVEASESAKALLRVDVGT 399

Query: 445 M--HGPIRNWLPYI------HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +   G     +  +      H  + +   T L        G     +           + 
Sbjct: 400 LLLDGTDTAMIDILRRLVSEHDAEPNRIHTALAD-FTGSGGSHAAHYE----------VS 448

Query: 497 IRIRPMSNSNGDILRYIG--IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           I I P   +     R+ G  I  D+T +++    +   + +D+LTG+ NR+ F  RL  I
Sbjct: 449 ITISPTEQTTAARSRFAGCLIMRDVTARREYEHRLKKLSERDDLTGLLNRREFASRLAAI 508

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                        V V+DI ++  +   LG   GD++L ++  R+       D+LARL G
Sbjct: 509 --------EGEVLVSVLDIKRFSSLCATLGRDAGDELLKAVAARLASAFAD-DLLARLDG 559

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + FG I    N+  +I DFA ++ +    PI L    + V+  +G A    +   +  +L
Sbjct: 560 DHFG-IATLTNDERRIEDFADSLLRLFEEPILLRGAVVPVSVRLGGARSGDAAPGA--LL 616

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A+   K   G    SF  S+   ++    ++ D+  A++N + +L + P I    
Sbjct: 617 TAAESALDAVKASPGQRWSSFDPSTAVRQARSRRLERDMRDALQNRQFFLQFQPQIEFRS 676

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +VG EALI+W+HP++G IS +EF+ IAE   +I  I  + L     +  +W  +    
Sbjct: 677 RRLVGAEALIRWNHPEFGLISPAEFIPIAESSGIICDIGRWTLFEACTEAAAWPGE---- 732

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N+++     +++   ++  +S +    SR+ L  +ES  +     S   +  LR
Sbjct: 733 -LSVAVNVSALQFEGSDVEADVRDALSCSGLPASRLCLELTESAFLDKGGASIAKMRALR 791

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             G+ + LDDFGT  S ++YL  +P D +K + S +           I+R+I+ +A  + 
Sbjct: 792 DRGVVIALDDFGTGYSSMNYLADLPLDKLKIDQSFVRRMNGNPSIFEIVRAIVSLAHGLN 851

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             ++A+ +  E++ + L R+GC+  Q      P   +  L++L    
Sbjct: 852 LVVVAEGVETEVEAEALHRLGCETGQGYLFGRP---DEALRMLSNWN 895


>gi|262192036|ref|ZP_06050200.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262032088|gb|EEY50662.1| sensory box/GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 718

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 158 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 215

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 216 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 271

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 272 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQL 330

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 331 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 390

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 391 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 450

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 451 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 510

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 511 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 569

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 570 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 629

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 630 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 689

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 690 IGVDYAQGYLFSRPQPIADWVAEQLKEK 717


>gi|322508713|gb|ADX04167.1| signal transduction protein [Acinetobacter baumannii 1656-2]
 gi|323518319|gb|ADX92700.1| signal transduction protein [Acinetobacter baumannii TCDC-AB0715]
          Length = 697

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 113 FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 172

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 173 EKKFGMR-WLDLLPPHIRKRGRIALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 229

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 230 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 289 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 348

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 349 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 408

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 409 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 467

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 468 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFVPLPVSLN 526

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 527 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 586

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 587 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 646

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 647 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 685



 Score = 44.6 bits (104), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 9   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 + +R  R++++ R+    + + W  I I+          N   + ++ I  DI 
Sbjct: 66  NKWLDAIRFRS-RIEFKCRLLHKTHYYRWCKISIQLSKYHESSQENEWFISFLDIDQDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQSLRKDIDIQ 136


>gi|320334154|ref|YP_004170865.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319755443|gb|ADV67200.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 753

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 113/424 (26%), Positives = 195/424 (45%), Gaps = 13/424 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +R  F   L   L               +D+D ++++ND LG   GD +L  
Sbjct: 333 YDALTGLLSRTHFTHVLHGALRRPLALLL-------VDLDGFRRVNDTLGHPTGDALLQE 385

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--EI 652
             RR+         LARLS + F +IL  E  +      A  +  ++  P  L +    +
Sbjct: 386 TARRLRRATPPDATLARLSADEFAVILPHET-AATAGRAAHRVLNALNEPYPLDQDTAPV 444

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710
            VTASIG        + ++  L+NAE A+  AK  G   + ++  +          ++  
Sbjct: 445 RVTASIGLTLCPDEAVDATSALRNAEFAVQDAKRHGRQQLRAYNPARQADVTAHQRLETH 504

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A +  EL+L Y PI+ L    IV  EAL++W     G +  ++F+ +AEE  +I  +
Sbjct: 505 LERAADRGELHLAYQPIVDLGSGRIVAAEALLRWTSADLGRVPPTQFIPVAEERGLIGDL 564

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            L+ L    R   +WRDQ     + + +N++       +  + +Q  + +    P+ + L
Sbjct: 565 GLWALNAAIRQARAWRDQ-GHTHLRVNVNVSPLQFGHGDFVQHVQRALDQHGVPPAALAL 623

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++ +   S   L RLR +G+ + LDDFGT  S LSYL  +P D VK + S ++ 
Sbjct: 624 ELTEGALIRDVHASNDTLRRLRALGVCIALDDFGTGYSSLSYLQALPVDDVKLDKSFVSA 683

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            T+   A++ +I+ +A ++  +++A+ +       +L  +G D  Q    A PL    + 
Sbjct: 684 MTQSGPALVEAIVRVAHHLGLSVVAEGVETPTHRDDLRALGTDRAQGFLFARPLDAEDLT 743

Query: 951 KLLK 954
             L 
Sbjct: 744 ARLA 747


>gi|197103816|ref|YP_002129193.1| hypothetical protein PHZ_c0350 [Phenylobacterium zucineum HLK1]
 gi|196477236|gb|ACG76764.1| hypothetical protein PHZ_c0350 [Phenylobacterium zucineum HLK1]
          Length = 460

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 114/438 (26%), Positives = 214/438 (48%), Gaps = 12/438 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  A  D+LTG+ NR +F   L   LD +        ++ V+D+D++K +ND LG   GD
Sbjct: 26  LRLAQTDSLTGLLNRGAFTTLLCARLDAARESGGT-VSLFVVDLDRFKHLNDTLGHHAGD 84

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  L  R+       ++ ARL G+ F II    +++ ++   A  +   ++ P  +  
Sbjct: 85  LLLAELGERLRAECGPAEVAARLGGDEFAII----SDAREVGRRAARLVSVVSQPQMIYG 140

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
           R+++  AS+G A +      ++++ + A+LA+Y  K RGG    +F       +     +
Sbjct: 141 RQVSPGASVGVAVFPQDAGDAADLQRFADLALYRVKTRGGRRWSAFDAELRAENERRRTL 200

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +E+L  A+   E+   + P+I      I G+E L +W+HP+ G +S + F+ +AEEL +I
Sbjct: 201 EEELRRAIPAGEIEPWFQPVIDSTTGGITGVEVLARWNHPEQGLLSPAAFVPMAEELGLI 260

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           +AI+  + +        W     +    +  N++ +DLLD      +   ++ T    + 
Sbjct: 261 RAIDEAVFDAACARAAPWVADGLIE--HVACNVSPRDLLDPGFSRKLIGRLAGTDLPATA 318

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +E+ ++ +   +R  + RL   G+ + LDDFGT  S L  L ++P  TVK + SL
Sbjct: 319 LTVEITETFLLQDMALARRHIERLAAKGVRVALDDFGTGYSNLRALMHLPIQTVKLDRSL 378

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           ++ S++  A+ +  +IIA+ +  E     L   GCD +Q    A P+ 
Sbjct: 379 IADVGRDARVSKLVASLLHAARALGVSIIAEGVEDEGQALFLRSAGCDRMQGYFFARPMS 438

Query: 946 FNSIL-KLLKERFPLVKN 962
            +++  +LL+ R    + 
Sbjct: 439 ADAMEAQLLEARPQPARR 456


>gi|66047169|ref|YP_237010.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63257876|gb|AAY38972.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|330973041|gb|EGH73107.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 784

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 210/430 (48%), Gaps = 11/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + I+    I++ +    
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSSIAAHR-----GVALLSLSIENLATISESVSAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +L    +R+   L+  D +ARL  N F ++L +  +       A A+++ ++ P  +
Sbjct: 407 VDQLLRQAGQRLQGNLRAGDTVARLGANEFLLLLDNIAS-DGAVGMADAVQRLLSEPQRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
              E+ +   IG   +     ++ E+L  A +A   A    G   +           ++ 
Sbjct: 466 DNHELELECCIGITVYPEHGDSAQELLSRAAIARKDATFLPGRLQIYQDGRDLAHQRQIT 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +N EL L Y P + +    +   EAL++W HP++G++S +EF+++AE    
Sbjct: 526 LIRDLRKAAQNGELSLHYQPKLDIRQGYVRQAEALLRWAHPQFGSVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +      
Sbjct: 586 IYLLTNWVIEEAMRQLAVWRQRGLV--LQVSVNISADDLLGDDLVGYVVKLLKQYAVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLK 954
             ++    + 
Sbjct: 764 TASAFEAWIA 773


>gi|238026665|ref|YP_002910896.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Burkholderia glumae BGR1]
 gi|237875859|gb|ACR28192.1| Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Burkholderia glumae BGR1]
          Length = 611

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 121/558 (21%), Positives = 245/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +          I   D      +L    
Sbjct: 54  GAVDFLAHVDRDLRFLYVSEASLRFIGYHRDYL--RTLTLRDLIPEQDTATLEALLARA- 110

Query: 473 GYRRGRLQ-YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             + G ++     +  +      + +R   + + +  +  +   A D++  +     +  
Sbjct: 111 -NQTGHVEKATVCIVKSLTYPLDVELRA--VRSRHAGVDGFAIAAFDVSAWRALEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + +  L      +  D +    ++++D+D Y++IN  LG   GD +
Sbjct: 168 EMHHDPMTGLDNLSALIPGLMEAQREADEDGSC-AALLLLDLDDYQRINRGLGYDAGDVL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  ++   + LAR++ ++F I+     +     +    A  ++ +I  P    
Sbjct: 227 LRDTAQRLRSVIAGHERLARVASDKFAIVFGAPDARQAREQAQTLARRLQAAIQPPYRYD 286

Query: 649 EREITVTASIGFASWTSS------KITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSF 700
            + + ++ASIG A +             S +L+ A+ A+  AK  GGN +   +      
Sbjct: 287 GQSVHLSASIGIALYPDERPGSQRAQNHSPLLRRADHALSQAKALGGNTLAFHQTAADPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ ++ DL   V N E  L + PI       + G+EALI+W HP  G +  + F+ +
Sbjct: 347 DGERLKLEADLYDGVRNGEFSLHFQPITESRSGAVAGVEALIRWHHPVHGMVPPTTFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     I+ W +Q      ++ +N++ +   D    +G++  I+ 
Sbjct: 407 AESIGLIHYLGNWVLKAACMQIVQWDEQGITLE-YVAVNVSPQQFRDPRFVQGVREAIAL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  SP RI L  +ES++M +P  ++ LL  +  +GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGISPQRIVLEITESLLMHDPVGAKALLEEVAALGIRFAVDDFGTGYSSLAYLQRFPLAR 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ ++  ++A+ +  E     LT MGC +IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLTEMGCGHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + R
Sbjct: 586 LVCRALPSDELAQRFEAR 603


>gi|170691222|ref|ZP_02882387.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           graminis C4D1M]
 gi|170143427|gb|EDT11590.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           graminis C4D1M]
          Length = 975

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/441 (28%), Positives = 221/441 (50%), Gaps = 11/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  ++   +    F D LTG+PNR+  L+RL         D   +  VM +D+D++K +N
Sbjct: 527 ELDEANAQLWHENFHDALTGLPNRRYLLERLGAEWTR-HRDAGQQLVVMFLDLDRFKVVN 585

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LVS   R+ + L    +LARL G+ F  IL +E +     + A  +  +
Sbjct: 586 DSLGHHFGDQLLVSAATRLRDCLADKCMLARLGGDEFA-ILSAEASVEDAIELAERILSA 644

Query: 641 IAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +P ++ +  +  + SIG  S         +++L++A+ AMY AK+ G +    F    
Sbjct: 645 FDVPFSIGDHVVFSSCSIGIVSADDDFHGEPADLLRDADTAMYRAKNGGRDSYVVFNQEL 704

Query: 700 FRSDRVMIKED--LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            R     ++++  L  A  ++ EL   + PI+      +  LEALI+W  P    ++  E
Sbjct: 705 RRQVSDQMQQEGSLRAALKKDDELAPFFQPIVCTATGRLTALEALIRWRQPDGRVLTPGE 764

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E L ++  ++L+ML RIA  +      A  PP  + +N +S  +   +  + + A
Sbjct: 765 FLPAMEGLRVMGRLDLYMLNRIAVILAQ-PGLAGWPP--VHVNCSSYSMTREDFADDVFA 821

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +   +PSRI L  +E  ++  PE +R  + RL   G+S+ LDDFGT  S LSY+   
Sbjct: 822 LLQQHGVAPSRICLELTEGALIAEPEIARRTMQRLADNGVSVVLDDFGTGFSSLSYVHEY 881

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            F  +K + S   G     +  AI+R+I+ MA++++  ++A+ +   + +  L  +G   
Sbjct: 882 RFSGLKVDKSFTFGLSSNPRTRAIVRAIVRMAESLDLRVVAEGVEDAMTLAALREIGAGQ 941

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q  ++A P+   ++++ L  
Sbjct: 942 AQGYYIAKPMPLAALVEALDS 962


>gi|332297246|ref|YP_004439168.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
 gi|332180349|gb|AEE16037.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
          Length = 603

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 192/436 (44%), Gaps = 15/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A+ D LTG+ NR  F   +  +L    +       +M+IDID  K IND  
Sbjct: 157 ALNMELSHIAYHDMLTGLKNRSCFNKDIN-LLTTQISTAVKIFGIMIIDIDNMKNINDSR 215

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L +    + +  K    L R  G+ F ++         +   +  + ++   
Sbjct: 216 GHTAGDMLLCNAANALRQFKKDTIQLYRFGGDEFLVLATELETRDSMITVSDVIMEAFET 275

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                     ++ S G   +    I   ++LK A++A++  K +G ++   F  S     
Sbjct: 276 A--------EISISAGITLYPDDSILPDQLLKFADMALHEVKKQGKHNSLFFSRSMQDEF 327

Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ I+  L  A+      + + P + +   ++ G EALI+W  P+ G I  S+F+ IA
Sbjct: 328 LNRLNIETKLQKAINGQSFEMYFQPQVDISRNKLRGFEALIRWYDPELGWIPPSKFIPIA 387

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   + A+  ++LE   R +  W+++     I I +NI+   L        ++ LI++ 
Sbjct: 388 EETRQVIALGEWVLETACRTLKRWQEEYRFTGI-ISVNISPVQLKKASFIYDLEQLIAEQ 446

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+++++  +E V + N E    +L +++ +GI ++LDDFGT  S  +YL  +P   +
Sbjct: 447 DIDPTKLEIEITEGVFIENMESVVSILTQIKSMGIGISLDDFGTGYSSFNYLQILPLTAL 506

Query: 882 KFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K + S ++    +      I  +I+ +   +    IA+ +     ++ L  + C   Q  
Sbjct: 507 KIDKSFISNIAARNSVEADITDAIVALVTKLGLDTIAEGVETVEQLQVLQSINCRTTQGF 566

Query: 939 HVASPLGFNSILKLLK 954
               P+  +   K+L 
Sbjct: 567 LTGKPMPISLCEKMLS 582


>gi|170719394|ref|YP_001747082.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169757397|gb|ACA70713.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 554

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 115/444 (25%), Positives = 218/444 (49%), Gaps = 9/444 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   LT  L     +D     +  +D+D ++ 
Sbjct: 110 VRERGVLVATLQRLAEQDPLTGIANRQGFQALLTARLA---ENDGRGVALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+ + L+  D LARL  + F +++ +  ++ +    A  + 
Sbjct: 167 VNDALGHQGGDRLILQVVSRLKQQLEAGDQLARLGSDEFALLIDTRRDTGRAERIAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWIDGESLLLGCSLGLAHARAQ-SGADPLMWHAHIAMRQAKSSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSLADLEGELRRALRRDELELHYQPRLNLADGSIVGLEALVRWRHAERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ + R+     P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALRESGLA-PLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LIIEHGVDARWLEFELTETAVMRRNELVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+   ++ ++I +A N+   ++A+ +     +  L   GCD 
Sbjct: 465 PITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESPEQMALLREFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLLKERFP 958
           +Q   V+ PL  + +++ L    P
Sbjct: 525 VQGFLVSKPLPVDELVEYLSGSVP 548


>gi|184158388|ref|YP_001846727.1| signal transduction protein [Acinetobacter baumannii ACICU]
 gi|332873880|ref|ZP_08441820.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
 gi|183209982|gb|ACC57380.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Acinetobacter baumannii
           ACICU]
 gi|332737866|gb|EGJ68753.1| diguanylate cyclase domain protein [Acinetobacter baumannii
           6014059]
          Length = 694

 Score =  406 bits (1044), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 110 FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 169

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 170 EKKFGMR-WLDLLPPHIRKRGRIALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 226

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 227 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 285

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 286 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 345

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 346 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 405

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 406 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 464

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 465 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFVPLPVSLN 523

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 524 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 583

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 584 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 643

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 644 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 682



 Score = 44.6 bits (104), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 6   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 62

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 + +R  R++++ R+    + + W  I I+          N   + ++ I  DI 
Sbjct: 63  NKWLDAIRFRS-RIEFKCRLLHKTHYYRWCKISIQLSKYHESSQENEWFISFLDIDQDIQ 121

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 122 EQQSLRKDIDIQ 133


>gi|324998118|ref|ZP_08119230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudonocardia sp. P1]
          Length = 900

 Score =  406 bits (1044), Expect = e-110,   Method: Composition-based stats.
 Identities = 125/586 (21%), Positives = 246/586 (41%), Gaps = 21/586 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     +Q V             G+R +  V      V   D     V   P +  +L  
Sbjct: 303 LRLIGTVQDVSDRRRAESRAQRSGQRFADLVATITTGVAMLDGRGRIVDANPALCRLLDA 362

Query: 441 ASGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMII 497
              ++ G     L        DR      L     +     + E   +  AD       +
Sbjct: 363 DLETLRGVPARALSA-EPQRGDRGGLPDWLRDP-SHPEPTYRIESLPLLRADGTRVDCEV 420

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +    + +G    ++ +  D+ E++++ + +      D LT +PNR   L+    +L  
Sbjct: 421 VVNAAPSDDGRP-FWLLVVTDVGERRRAADVLREANTVDPLTRLPNRAGLLELADRLLSG 479

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
              D   R  V+  D+D + ++N  LG   GD +L  L  R+   L      ARLS + F
Sbjct: 480 PGAD---RVAVVCGDVDDFARVNTGLGHDAGDTLLTELAGRLQRELPPLCTAARLSADEF 536

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS-----SE 672
            ++    ++    A  A  +   +   + +  R +T++AS+G A+  +           +
Sbjct: 537 AVVCADTDDVGGAATLAGTVADLLRGSVTVAGRPVTLSASVGVATRDAVPEGPRAPRGDD 596

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           +L++AE+A+  AK RG   V      +      ++ ++ +L  A+E+ EL L Y P++  
Sbjct: 597 LLRSAEVAVQQAKKRGRGTVVVADRGTVGPAQRQLELEAELRAAIESDELRLEYQPVV-G 655

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  ++  EAL++W HP  G +S  EF+ +A+   + + ++L++L   A +  +W     
Sbjct: 656 PDGTVLSAEALLRWSHPVHGEVSPGEFLPVAQRGGLQRDLDLWVLRTAAAEAATWPRHGR 715

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              I + +N+A     D +  E + A++        ++ L   E+ ++  P  +   +  
Sbjct: 716 --SIAVAVNLAGLLPADPDFLEEVSAIVDGAGLGWDQLVLELVETSLVALPRPALDAMSE 773

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKN 908
           L + G+   +DDFGT  S L+ L  +P  TVK + + +T  G+     A+ R+++ +A+ 
Sbjct: 774 LVRRGVRFAVDDFGTGYSSLARLKELPAQTVKVDRAFVTGVGTDPADFALARAVVEVARA 833

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    +A+ +        L  +G +  Q    A  L  + + ++L+
Sbjct: 834 MGRATVAEGVETAEQFHVLRGLGVNAFQGWLFARSLRPDDLHRVLR 879



 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 20/144 (13%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI---LGLASGSMHGP 448
           A     +    D ER       +    W +D+    +T +  +  +   LG+      GP
Sbjct: 195 APAASDEAPALDLER------ATRSGTWTFDLQAGTLTRSEGLVELYRVLGVRPDGPDGP 248

Query: 449 IRNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           I            +    +L              +   +R        +  R R      
Sbjct: 249 IEG-------EQVERVCRMLRRGPEESSSAAHASHSSEIRPEGGAV--LSCRTRIDRTPG 299

Query: 507 GDILRYIGIANDITEQKKSLEGIL 530
           G  LR IG   D+++++++     
Sbjct: 300 GAPLRLIGTVQDVSDRRRAESRAQ 323


>gi|27383111|ref|NP_774640.1| hypothetical protein blr8000 [Bradyrhizobium japonicum USDA 110]
 gi|27356285|dbj|BAC53265.1| blr8000 [Bradyrhizobium japonicum USDA 110]
          Length = 865

 Score =  406 bits (1044), Expect = e-110,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 208/458 (45%), Gaps = 17/458 (3%)

Query: 507 GDILRY-IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G++    +     +T  + S + I   AF D ++ +PNR+        ++          
Sbjct: 393 GEVRGLGLAFERMLTHLRASTQRIRQLAFYDTVSRLPNREKMRVDAPALI-----GAEEG 447

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-----FPDILARLSGNRFGII 620
             +  +D+D +K IND  G   GD++L  +  R+  LL         +LAR+ G+ F  I
Sbjct: 448 AALFFLDLDGFKSINDTFGHKAGDELLRMVAERLSNLLMTKGAAGKCLLARVGGDEFVAI 507

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +         +  A  M +++ +   L     T+  SIG A   +   T  ++L  A+LA
Sbjct: 508 IAGVKTVEAASLSAREMIETLQVSFKLQSNHATIGVSIGIAICPTHGTTYDDLLIRADLA 567

Query: 681 MYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N    F          R  ++ DL LA+ N EL + Y P +   +  I+G+
Sbjct: 568 MYVAKSSGRNTYAFFTPDLAEVARARHALETDLALAIRNEELVVHYQPKVSCANGRILGV 627

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W HPK G+I    F+ IAEE+ +I  I+ F+L R   +I           + + +
Sbjct: 628 EALARWHHPKEGDIPPQRFIKIAEEIGLIMEIDRFVLRRALAEIGGLIRAG--SNLVLAV 685

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+A+ ++ D      +   + +  + P  +++  +ESV M NP+  R  +  LR++GI  
Sbjct: 686 NVAATEIEDPLFIRDIITTVREADFPPPNLEIEITESVAMRNPDVVRERISLLRQLGIRF 745

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFG   S LS +  +PFD VK + +L+ G     ++  ILR  + +A  +    + +
Sbjct: 746 AMDDFGAGYSNLSTMARLPFDAVKLDRTLVAGVAGDREKQTILRLALGLADELGFETVVE 805

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +    D++     G    Q    + PL       LL+
Sbjct: 806 GVETAEDLRFAAENGATMAQGYIFSPPLPLEEFAVLLQ 843


>gi|227080308|ref|YP_002808859.1| GGDEF/EAL family protein [Vibrio cholerae M66-2]
 gi|298501151|ref|ZP_07010951.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
 gi|227008196|gb|ACP04408.1| GGDEF/EAL family protein [Vibrio cholerae M66-2]
 gi|297540185|gb|EFH76246.1| sensory box/GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 768

 Score =  406 bits (1044), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 208 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 265

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R ++     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 266 QDEEVLTPRQMILLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 321

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 322 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTH-AMLYLDLDQL 380

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 381 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 440

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 441 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 500

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 501 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 560

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 561 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 619

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 620 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 679

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 680 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 739

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 740 IGVDYAQGYLFSRPQPIADWVAEQLKEK 767


>gi|260550366|ref|ZP_05824578.1| diguanylate cyclase domain-containing protein [Acinetobacter sp.
           RUH2624]
 gi|260406678|gb|EEX00159.1| diguanylate cyclase domain-containing protein [Acinetobacter sp.
           RUH2624]
          Length = 697

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 121/579 (20%), Positives = 243/579 (41%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 113 FVSFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGVPVN 172

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 173 EKKFGMR-WLDLLPSHIRKRGRVALKKALEGKVARFAGMSCLPHQDPEY--WDNMLTPIQ 229

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 230 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 289 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDHERCSVARLGGDEFAVIVS 348

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 349 HLKNENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 408

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 409 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHTVVGFE 467

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M  ++  D+  W       P+ + +N
Sbjct: 468 ALLRWHTTSAQTGLPSQIAEAFKDYDLASKIGEIMQHQVLHDMAKWIK-LGFQPLPVSLN 526

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I+        I++  +E ++     E     L +L++ G+ +
Sbjct: 527 AAPVEFLRDNYAERLLKKINHLEIPTHLIEVEVTEHMLGDRGSEYVIRALNKLKQHGVRI 586

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          +I+++I  +A N+   +IA+
Sbjct: 587 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQNDPSIYSIVQAIGLLAPNLSLGLIAE 646

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q       +  N ++ +LK+
Sbjct: 647 GIETPEQEELLLQFGYNIGQGFLFEQAIDANQVVSILKQ 685



 Score = 44.9 bits (105), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 9   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 +   + R++++ R+    + + W  + I+          N   + ++ I  DI 
Sbjct: 66  NKWLDAIR-LQSRVEFKCRLLHKSHHYRWCKLSIQLSKYHESSQENEWFVSFLDIDQDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQSLRKDIDIQ 136


>gi|255743967|ref|ZP_05417922.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262151342|ref|ZP_06028476.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262167261|ref|ZP_06034972.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|255738450|gb|EET93840.1| sensory box/GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262024325|gb|EEY43015.1| sensory box/GGDEF family protein [Vibrio cholerae RC27]
 gi|262030881|gb|EEY49511.1| sensory box/GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 718

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/568 (18%), Positives = 216/568 (38%), Gaps = 16/568 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  +  M G   +   + 
Sbjct: 158 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNHFAEQLLGYPADVMLGH--HIRDFY 215

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +    R +L     +     + E   R    +  W+   IRP+     +    + + 
Sbjct: 216 QDEEVLTPRQMLLLPSRHASSVWRREVCYRHHSGETVWVRENIRPLV----ETGTLLIVG 271

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+ 
Sbjct: 272 EDITETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETDSQLRTH-AMLYLDLDQL 330

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD  +      + ++L F   LAR+ G+ F ++L        +      
Sbjct: 331 KVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSVLLRDCTERDAVLVAQSI 390

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +          +T SIG      +  +   +   A+ A + AK  G N    +R
Sbjct: 391 IHALSEVAFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLYR 450

Query: 697 VSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGN 751
                  R  ++ +    +  A+ N  + L    I+ L   +++   E L++  +     
Sbjct: 451 QDDEDLRRRQLEMESVNLVHDALANERIELFAQRIVPLNQPDVLLHFEVLVRIKNAAGEY 510

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+  +E   +   ++  ++E+    +   R Q       + IN++   + + +  
Sbjct: 511 VSPGIFVPASERYNLAHRLDRKIVEQTFNWL-EARPQVLDKLGRVSINLSGNSIGNPDFV 569

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S   
Sbjct: 570 AFLLERLRDSRIPCSKVCFEITETAAMRNLNQAIKVLSQLKSLGCVLALDDFGSGLSSFG 629

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK +G  +    +      ++RSI  + K +  + +A+ +  +  ++ L +
Sbjct: 630 YLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKSTVAEFVENQQILEALQQ 689

Query: 930 MGCDYIQDSHVASPLGFNS-ILKLLKER 956
           +G DY Q    + P      + + LKE+
Sbjct: 690 IGVDYAQGYLFSRPQPIADWVAEQLKEK 717


>gi|325921418|ref|ZP_08183275.1| diguanylate cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
 gi|325548176|gb|EGD19173.1| diguanylate cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
          Length = 794

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/439 (26%), Positives = 216/439 (49%), Gaps = 9/439 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  +++ +     +   V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLERLQQVVEQTVAS-GVTAAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ +   +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLAEVVQEPNVVGRLGSDEF-MVVVAQADMTSVQQDAQRLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH---RGGNHVESFRVSSFRS 702
            L +  I + ASIG A           +L+ A++A     +    G + V          
Sbjct: 463 ALPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQGGNVITIGASSVYRLGQDEQHL 522

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ +  DL  A+ ++EL L + P I L  + +  +E L++W HP  G I   EF+ +AE
Sbjct: 523 RRLRLTGDLRQAIASNELTLRFQPKICLRSDRVEQVEVLVRWHHPVLGPIGPDEFIPLAE 582

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  ++L+   R    WR Q       + IN+++ DL D  L + ++  +    
Sbjct: 583 HSGVIHPLTRYVLDEALRCQAQWRSQGLELG--MAINLSALDLSDPGLPDYVRGRLEHHA 640

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +  R+ L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K
Sbjct: 641 VAAERVTLELTESALMRDVEFALHMLHQLRSVGVRLSIDDFGTGYSSLAQLKRMPVNELK 700

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    
Sbjct: 701 IDKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENATALGLLRSYGCDMVQGYLY 760

Query: 941 ASPLGFNSILKLLKERFPL 959
           A PL     +     +  L
Sbjct: 761 APPLEEVPFVAWCMRQLDL 779


>gi|260469669|ref|ZP_05813832.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium opportunistum WSM2075]
 gi|259028581|gb|EEW29894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mesorhizobium opportunistum WSM2075]
          Length = 697

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/609 (20%), Positives = 231/609 (37%), Gaps = 21/609 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLATGYFSQGIFSDGERQSLA 410
             + +  +L + +      G +          ++     +         +     R  LA
Sbjct: 88  TELRLKHKLGHWVWVLDRGGIVERDTSGKPTRLMGVQTDISKQKAAEAELEQVNVRFRLA 147

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  SG  +W +DI  ++         I GL + +       W  Y+H +D++        
Sbjct: 148 LAASGTGIWHYDIATNKSYWDARTRDIFGLVADTDEVTADLWHSYLHPDDKEATERA-HL 206

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 G    ++R+   D +   +   +R    + G   + +G   DITE+K   + + 
Sbjct: 207 PPPGSDGVTASQYRIIRRDGEIRHVESLVR-FVAAAGAAGQILGTVRDITEEKLRQQELA 265

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+ NR +F   L   +        +   V  +D+D +K +ND  G A GD 
Sbjct: 266 YAARHDALTGLCNRAAFDRLLADHIAA-----GVPLAVFYVDLDYFKALNDFAGHAAGDL 320

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
            L S++  I   L      ARL G+ F +++   N S         +       +     
Sbjct: 321 ALKSVSAGIRGCLPQAAHAARLGGDEFALLVPHCNASQAERIATAVLGAVREADLGTAAS 380

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS----DRVM 706
              + ASIG A    +  T ++ L  A+ A Y AK  G N    F           +   
Sbjct: 381 SRKLAASIGIAFIDDASTTVADALACADDACYAAKAAGRNRFAVFSTMVESGSGGLNAAR 440

Query: 707 IKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +  D   A+E   L L    I       +E   +E L +        +   EF+ +AE  
Sbjct: 441 VAADTVDAMEEGRLKLFGQEIHLLGKPWQESRHVEVLARLAGRNGRLVPPGEFIPVAERF 500

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   ++ +++      +           + +  N++++ L D +L   + ++I +T   
Sbjct: 501 GIASRLDRWIIRTA---LSRHGAALRSGSLTLGFNLSAQTLSDPQLWAFVDSVIDETGVP 557

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S I    +E+  + N + +   + + R+    ++LDDFG   S   YL   P DT+K +
Sbjct: 558 HSGIGFEITETAAVTNFDAAEQFVRKARERRCRVSLDDFGAGMSSFEYLRRFPVDTIKID 617

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GS +   TE      I+ +I  +A+++   ++ + I  +  +  L  MG  + Q   +  
Sbjct: 618 GSFIEHITESRFDREIVLAITSIARSLGCDVVGEKIERQDTLAMLGDMGVAFGQGFLLHR 677

Query: 943 PLGFNSILK 951
           P     I+ 
Sbjct: 678 PEPLEQIVA 686



 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + A+  +   VWDWDI       +   A +LG     +      WL   H +DR++   
Sbjct: 14  WAKALERAHLGVWDWDIRTGDCFYSATWAHMLGYDEDELAATSDLWLQLTHPDDREHALA 73

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525
             D  +      ++ E R++     + W++ R   +  +++G   R +G+  DI++QK +
Sbjct: 74  SGDRHIAGLTDAIETELRLKHKLGHWVWVLDRGGIVERDTSGKPTRLMGVQTDISKQKAA 133

Query: 526 LEGILC 531
              +  
Sbjct: 134 EAELEQ 139


>gi|149182638|ref|ZP_01861107.1| PAS:GGDEF [Bacillus sp. SG-1]
 gi|148849661|gb|EDL63842.1| PAS:GGDEF [Bacillus sp. SG-1]
          Length = 561

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/531 (24%), Positives = 250/531 (47%), Gaps = 12/531 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
             T +     ++       +   R +L  +  ND+D FR  +   +        +   ++
Sbjct: 32  IFTFSLKTFELITYPEQENYFSGRTFLGLLGKNDKDQFRYAVQQLIDGELNISSFYAEIK 91

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            +++   +  I+++ +   + +    I + ND   +  S EG       D  T    ++ 
Sbjct: 92  MSESSKVYAKIQLQLI--QHNNQTCCIALVNDRYSESTSEEGSCLEGLMD--TQC--QKV 145

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F  RL   ++LS     L    +++D+D++K IN  LG   GD++L  + +R+   ++  
Sbjct: 146 FYKRLQDSINLSVKTGTLVSV-LLLDLDRFKNINHSLGRRYGDEILNLIPKRLQAHIRQN 204

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D L RL G++F  +  S  +S  I   A  + +S + P  +   E+ +T SIG ++    
Sbjct: 205 DGLIRLEGDQFLFVFKSLRSSADIDQIADRLLESFSEPFQVEGFELFITPSIGVSTNNGE 264

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
              +  ++ +AE AMY AK  GGN  + +  +   S  +R++++  L  A+E  E  L Y
Sbjct: 265 NCDAESLIMDAEKAMYKAKESGGNCYKYYHETMNSSVLERLVLENHLRKAIEFEEFVLYY 324

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++     EI  LEALI+WDHP  G +S +EF+  AEE+ +I  I  ++++   R +  
Sbjct: 325 QPLVDTKTNEINSLEALIRWDHPTRGILSPAEFIPFAEEIGLIGQIGEWVIKEACRQLRK 384

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W D      + + +N++++   D+ L E +  ++++   SP  I L  +E+  M    + 
Sbjct: 385 WHD-LGFTSLSMSVNLSAQQFKDDRLQEKLMNILNENRLSPEFINLEITETSAMEYSNKF 443

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSI 902
           + +    +   + + LDDFG   S LSYL     DT+K + S +           I+ +I
Sbjct: 444 KNVFNNFKHTKLKIHLDDFGVGYSSLSYLKQWTIDTLKIDRSFIKELVLDSDNREIVTAI 503

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I +A  +   +IA+ +  +  ++ L  +GCD +Q  +++ PL    +   L
Sbjct: 504 INLAHALGIKVIAEGVENKSQLEILDSLGCDTLQGYYISVPLPKEEMSSYL 554


>gi|241206157|ref|YP_002977253.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860047|gb|ACS57714.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 523

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/454 (25%), Positives = 210/454 (46%), Gaps = 23/454 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRL--------TTILDLSATDDNLRPTVMVIDI 573
           +  +       A  D+LT +PNR +F  ++           ++    +     T+  +D+
Sbjct: 80  RAAAQAKADWTATHDHLTKLPNRYAFERKILSRPIKDDEAEIEEWDRN----VTIFSVDL 135

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +KK+ND++G   GD +L+ + RRI  L    D + R  G+ F I+  +   + +   F
Sbjct: 136 DGFKKVNDLVGHKGGDILLIEVARRICALGNA-DCVYRFGGDEFIIVAFALT-AQREERF 193

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  + +++  PI++    + V AS+G+  W        +    A+LAMY AK RG NH  
Sbjct: 194 AKLLIQAVTRPIHIDGFAVEVGASVGYDRWAEGAEPLEDAAHRADLAMYEAKSRGPNHYF 253

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  S      +R  ++  L  A+ N  +   Y P+I L   ++ G EAL +W      N
Sbjct: 254 VFEPSMQDKVTERAALETRLRAAISNKAIKPFYQPLIDLKTGQLCGFEALARWIGDDGVN 313

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ IAEE  MI A+   +L +   D ++W D      + +  N++   + D  L 
Sbjct: 314 IPPPVFIDIAEETGMITALFEDLLTQACSDALAWPDH-----VTLSFNVSPVQMEDRLLT 368

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++S +   P R+++  +E+ ++ +P  + L+L  L   GI + LDDFGT  S L+
Sbjct: 369 SRILKVLSASRLPPQRLEVEITENALIQDPAIAALILDELHAAGIQIALDDFGTGYSSLA 428

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L    FD +K + S +      E++  I+R+++ + +++     A+ I     +  L +
Sbjct: 429 QLSRYRFDKIKIDKSFIATYRDDERQEKIVRAMLGLGRSLNIKTTAEGIEEHGQLAFLLQ 488

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +GCD  Q       +        + +R   + +T
Sbjct: 489 LGCDIGQGYLFGKAMPAAEAGIFISDRNTKLAST 522


>gi|297623753|ref|YP_003705187.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297164933|gb|ADI14644.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Truepera
           radiovictrix DSM 17093]
          Length = 779

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 99/450 (22%), Positives = 208/450 (46%), Gaps = 25/450 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +++  + +   A  D LTG+PNR    +RL   L  +     +   ++ +D+D +K++ND
Sbjct: 324 RERLQQRLQHQARHDPLTGLPNRALMHERLEQTLAHAQRTSGVVAALL-LDLDDFKRVND 382

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG A GD +L  + RR+   ++  D +ARL G+ F  I+     +      A  + +++
Sbjct: 383 ALGHATGDRLLQEVARRLRAAVRALDTVARLGGDEFV-IIAPLAAAEDAPACAQRVLEAL 441

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + E    + AS+G + +      +  +L+ A+ A+Y AK         ++ +   
Sbjct: 442 RPPFKVQEHTFEMRASVGVSLYPCDAQDAETLLRAADSALYAAKGDARASFHRYQQAMTE 501

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +   R+ ++  L  A+    L L   P   L    +   EAL++W HP+ G +    F+ 
Sbjct: 502 TLETRLTLEVALREALAVGALELFAQPRFALRTGAVAAFEALVRWPHPERGLLLPGCFLE 561

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++ +++ ++ E+    +  W+      P  +  N+++      ++  G+  L  
Sbjct: 562 VAERGGLMASLDAWVFEQALVHLSRWQRLG--LPYRLSCNLSAASFRRGDVAAGLGELAG 619

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI--GISLTLDDFGTKCSLLSYLGYIP 877
           +    P+R++L  +E ++M + +R+   L +L+    G+ + LDDFG   S L+YL ++P
Sbjct: 620 RYGVDPARLELEVTEDLLMHDLDRAAQQLRQLKAQLPGLRVALDDFGRGYSSLAYLRHLP 679

Query: 878 FDTVKFNGSLMTGSTEKR-----------------IAILRSIIPMAKNIETTIIAKDIYG 920
            DT+K + + +                        +A++R+++ +   +  +++A+ +  
Sbjct: 680 LDTLKIDRAFVADLAAPNLAAPRVREGAPRTQRTALAVIRAVVALGHELGLSVVAEGVES 739

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  LT +G D +Q   V SP     + 
Sbjct: 740 AAQLGMLTALGVDEVQGFFVGSPAPLREVA 769


>gi|288935650|ref|YP_003439709.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
 gi|288890359|gb|ADC58677.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
          Length = 718

 Score =  406 bits (1043), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 222/437 (50%), Gaps = 13/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D L+ +PNR++ L RL+ + +    D+     V+ ID+D +K +ND  
Sbjct: 290 RGERQAREIAMIDWLSRLPNRRALLLRLSQVCETGKHDNQC---VVFIDLDGFKDVNDNY 346

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD ++  +   +   +    +LAR+ G+ F + +  E    + A FA A  + +  
Sbjct: 347 GHDVGDALIRHIASALQTRVPTGAMLARMGGDEFAMAVSGEKAIDRAAAFAWAALELLKA 406

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P+ L +R+I + ASIG AS   ++ +S+E+ + A++AMYHAK  G      +  +    R
Sbjct: 407 PVTLSKRKIYIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDDALDAVR 466

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++MI+  +   +E +E  + Y P++      + G+EAL++W     G ++   F+ IA
Sbjct: 467 RHQLMIENGIRQGLEQNEFEVWYQPVVDADTLAMTGVEALLRWPRRPQGALAPDAFIAIA 526

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I A+  F+L+R   D+        +  + + +NI+     D      +   ++  
Sbjct: 527 ESSGLIDALGQFVLQRACSDLQ------PVDDLLLSVNISPAQFRDPAFENRVMKTVAAC 580

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + PSR+++  +ES V+ NPERS+ ++  L+  GI++ LDDFGT  S + YL    FD++
Sbjct: 581 RFPPSRLQVEVTESYVLENPERSQAVVENLKAQGIAVALDDFGTGYSSIGYLRRFRFDSL 640

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL         A  ++R  + +A+ +  T++A+ +     +  L R GCD +Q  +
Sbjct: 641 KIDKSLAGRVDSDEQAAEMVRGTVRIARALGMTVVAEGVEDLQQLTLLRRAGCDRLQGYY 700

Query: 940 VASPLGFNSILKLLKER 956
            + P+    +L+  + +
Sbjct: 701 FSKPMPIADLLQRRQSQ 717


>gi|154245685|ref|YP_001416643.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
 gi|154159770|gb|ABS66986.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
          Length = 443

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 205/446 (45%), Gaps = 12/446 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +D  +  +        A  D +T +PNR    + L   L  S  +      V  ID+D 
Sbjct: 1   MSDADDGARGPWKSEYLALHDPVTSLPNRLLMTEFLAGALS-SPQETRRMLAVFCIDLDN 59

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +   N++ G+  GD +L    RRI   ++  D++AR+  + F I+     ++  +     
Sbjct: 60  FHHFNEMFGLDAGDLILAETARRIRRCVRDHDLVARVDADTFIIVATGVGDAKAVDGLTR 119

Query: 636 AMRKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            ++ ++  PI +    +     ++G A        +  +++ AELA+  AK  G      
Sbjct: 120 RLQSALNAPIGMSSGAVAYPLVNMGIALAPLDAEDAEGLVRCAELALEQAKADGPGTCSY 179

Query: 695 FRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F          R  ++ DL  A+ + E  L++ P       +++G+EALI+WDHP+ G +
Sbjct: 180 FADDVNEEMSGRRTLEGDLRRAIVSDEFVLLFQPRCDARTLKLLGVEALIRWDHPQLGLL 239

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+ IAE+  ++  I  ++L +    I    +      +            ++ L  
Sbjct: 240 TPDAFVPIAEKSGLVIPIGEWVLRKACDTISRLPELNVSVNVS------VVQFRNDALVN 293

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A++  T  +P R++L  +ESV++ N E++  +L  L+ +G+ L++DDFGT  S L Y
Sbjct: 294 TVDAVLKSTRVAPERLELEITESVLIENAEKALEVLEGLKNLGVRLSMDDFGTGYSSLGY 353

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K +   +      +  +AI+++I+ + + +   ++A+ +  E  +  L   
Sbjct: 354 LRTFPFDALKIDRRFVGDLDNSKGALAIVQAILGLGRALGMQVVAEGVETESQLAILRAD 413

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            CD +Q   +  P+   ++L  + +R
Sbjct: 414 SCDEVQGFFLGHPMTEEALLAFIADR 439


>gi|319956023|ref|YP_004167286.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Nitratifractor salsuginis DSM 16511]
 gi|319418427|gb|ADV45537.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitratifractor salsuginis DSM 16511]
          Length = 562

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 232/565 (41%), Gaps = 27/565 (4%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E   L         W WDI  D    +P   TI GL      G    +L  +    R  
Sbjct: 12  EELWRLTEEVGEIGYWKWDIRNDTTYWSPRKRTIYGLGEKE-KGSFELFLSVLDEQTRRL 70

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +   +     +  +   D +  W+  +   + +S    ++ IG+  DIT++K
Sbjct: 71  VEEEISRVLSGEKKYYDLQHEIHLRDGRTVWVHEKGYLLYDSEEKPIKLIGVVLDITKRK 130

Query: 524 KSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +  +               D LT +PNR +   RLT  +      +     ++ ++++ +
Sbjct: 131 QVEQDLLQEKNRSAFLENFDPLTRLPNRHALHLRLTREI-----GEGESFVLLFVNVENF 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
             IN++ G   GD +LV L +++ EL    + + R   + F +++     +  +  F   
Sbjct: 186 GTINNLFGHHFGDAILVRLAKQLEELAGSTN-VYRYGADEFVLLIPRLQETGGL--FERL 242

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            ++   +P+ +  + +T+  ++G   +       S ++  A  A+ HAK   G+ +  + 
Sbjct: 243 RQQLFDLPMQIEGQTVTLRFNVGVIHYPEDTRDISTLISGASTALAHAKSLSGSQIVRYH 302

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS- 753
               +   +     + L  A++   L   Y PI      +IV +EAL +W  P+   ++ 
Sbjct: 303 PHMQKQISLTYYGVDSLQRAIKQKALKPYYQPIFDTESSKIVAVEALARWIGPEGKPVAL 362

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +A++  +I  I+  ++E+   D+  W+ +   P   + +N+  +D         
Sbjct: 363 PGEFLPLAKQQGLIHQIDHLIMEQALEDLQKWKAKGLTP--RLAVNVYLEDFGQAAFSP- 419

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              L  +      ++ L  SE   +      R  L  LR +GI +++DDFGT  S L YL
Sbjct: 420 ---LFKRYQELLPQLILEISEEEFLACSRDDREQLDLLRDLGIRISIDDFGTGYSSLRYL 476

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + S +       +   ++R I  + +      + + +  E   + LT +G
Sbjct: 477 HSLPIDEIKIDRSFVENLPEDPQNGDLVRVIKKITEIYALDCVVEGVEREEQSRFLTSIG 536

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
               Q    A P+  +S L+LL+ +
Sbjct: 537 LPIQQGFLFARPMDASSCLELLESQ 561


>gi|294665478|ref|ZP_06730762.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604732|gb|EFF48099.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 790

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/588 (18%), Positives = 218/588 (37%), Gaps = 17/588 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 202 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 261

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          IH  D           + + +     E R   AD   
Sbjct: 262 SMANVLLYRPEEL--QACTLAEVIHPEDIKLDS---RGMLDWPKLLQSGELRFVRADGGV 316

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 317 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 376

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 377 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFADVITMQLRSGDWLGRL 435

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M  ++  P +    R +T + S G           +
Sbjct: 436 GGDEFAILLAN-TDLAQAQIVLERMHGALGQPWSHQGGRPLTPSCSFGVVEIRQGVSDLN 494

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM------IKEDLCLAVENSELYLVYH 725
            ++  A+LA + AK  G N +  F  +                  +  A+    L L   
Sbjct: 495 ALMTAADLACHAAKEEGRNRIRCFNENDLALALAQRRHDGGWISAVQQAIAEERLLLYAQ 554

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            I  L D   +  E L++        +S  EF+   E   + + ++ ++LE +   + + 
Sbjct: 555 KIQVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLSAN 614

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   +   +N++++ +   +  + + AL  +      ++ +  +E+ V+G+ E ++
Sbjct: 615 PMHVATLDL-CHVNLSAQSIAQPDFLDVVCALFERYPALVPKLCMEITETAVIGDLEHAQ 673

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
             +  +R  G  + LDDFG+  +   YL     D +K +   +          A + SI 
Sbjct: 674 RFVQSVRTRGCHVALDDFGSGLASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIA 733

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +   +   ++A+ +  E DI  L   G   +Q   +  P     +L 
Sbjct: 734 QVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLH 781


>gi|254502883|ref|ZP_05115034.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438954|gb|EEE45633.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 663

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/432 (24%), Positives = 196/432 (45%), Gaps = 13/432 (3%)

Query: 518 DITEQ--KKSLEG-ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           D+ E   K          A QD LT +PNR    +    +L  +  +      V+++ +D
Sbjct: 219 DVLEHHYKHLSRRTYQHLALQDPLTHLPNRHYVENIAEQLLKEANQNQKF-CVVVLVSLD 277

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +N++ G A GD VL  + +   E    P +++R  G+ F I+  S  +  +    A
Sbjct: 278 QFKTVNELHGYATGDAVLNQMAKTFQEKFPDPVVISRFYGDEFLIVHPSIKSLDEATGLA 337

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +R     PI      ++V  SIG A         + +++ A LA   AK  GGN ++ 
Sbjct: 338 RQVRDITRRPIQTATYRLSVQCSIGVAVSPRDGDNLAHLVQRANLAAKKAKAIGGNSIQP 397

Query: 695 FR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +   +         +  DL  A  +++L L++    R    E+VG EAL++W H + G I
Sbjct: 398 YVTGMEENNRWEAALAADLRYATLDNQLNLLFQKQNRTKTGELVGYEALVRWRHAEKGQI 457

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              +F+ IAE   +I  I  ++L    R    W+D     P+ + +N +      ++   
Sbjct: 458 PPEDFIPIAERSGIILDIGAWVLREACRAAADWQD-----PVTVSVNASPSQFTRSDFSG 512

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +T  +  R+++  +ES  + + +R    +  LR++G+ + +DD+GT  S L+ 
Sbjct: 513 LVSTVLMETGLNAHRLEIELTESTPIEDHDRVLHTIVALREMGVRVAMDDYGTGYSSLNT 572

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K +         + +  A+LRS + +  +    +IA+ +  E  ++ L  M
Sbjct: 573 LQAFPFDKLKVDRVFTKSLEASPQARAVLRSAVLLGHSFGIPVIAEGVETEKQLEFLKEM 632

Query: 931 GCDYIQDSHVAS 942
           GC  +Q      
Sbjct: 633 GCQEVQGFLFGK 644


>gi|262172837|ref|ZP_06040515.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
 gi|261893913|gb|EEY39899.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
          Length = 750

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/563 (18%), Positives = 211/563 (37%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G         
Sbjct: 190 EDKLFQREAGLRHYYDQQPVMMLTLDERNHIQQINQFAEQLLGYPADAMLGHHIRDF--- 246

Query: 457 HINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           + +D     R +L           + E   R    +  W+   IRP+     +    + +
Sbjct: 247 YQDDEALTPRQMLLLPSRNASSVWRREVCYRHHSGEAVWVRENIRPLV----ETGTLLIV 302

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+
Sbjct: 303 GEDISETRQLADQLAYQARYDLLTHTLNRNQFEMELAKALKETESQLRTH-AMLYLDLDQ 361

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K +ND  G   GD  +      + E+L F   LAR+ G+ F ++L              
Sbjct: 362 LKVLNDTAGHDAGDGAIQFCASMLEEVLPFKATLARMGGDEFSVLLRDCTERDAELVAQN 421

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +     +P         +T SIG      +  +   +   A+ A + AK  G N    +
Sbjct: 422 IIHALSEVPFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLY 481

Query: 696 RVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWG 750
           R       R  ++ +    +  A+ N  + L    I+ L   ++ +  E L++  +    
Sbjct: 482 RQDDADLRRRQLEMECVNLVHDALANERIELFAQRIVPLNQPDLQLHFEVLVRIKNAAGE 541

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+  +E   +   ++  ++E+    +   R +       + IN++   + + + 
Sbjct: 542 YVSPGIFVPASERYNLAHRLDRQIVEQTLSWL-EVRPEVVDKLGRVSINLSGNSIGNPDF 600

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S  
Sbjct: 601 VAFLLDRLGNSHIPCSKVCFEITETAAMRNLNQAIAVLSQLKGLGCVLALDDFGSGLSSF 660

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL  +P D VK +G  +    +      ++RSI  + K +  T +A+ +  E  ++ L 
Sbjct: 661 GYLQKLPVDIVKIDGIFVCDMDQNEMDRLMVRSIHELTKQMGKTTVAEFVENEQILQALQ 720

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            +G DY Q    + P     ++ 
Sbjct: 721 LIGVDYAQGYLFSRPQPIADLVA 743


>gi|220925371|ref|YP_002500673.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
 gi|219949978|gb|ACL60370.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylobacterium nodulans ORS 2060]
          Length = 880

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/445 (24%), Positives = 209/445 (46%), Gaps = 19/445 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++SL  +   AF D +TG+ NR+    R+     L+    +     + +D+D++K +ND
Sbjct: 422 LRESLGRVRQLAFFDPVTGLANREKM--RIDGTAALAGRRQD--VAFLFLDLDRFKSVND 477

Query: 582 VLGIAVGDDVLVSLTRRIGELLKF--------PDILARLSGNRFGIILISENNSLKIADF 633
             G   GD +L  L  R+   L+            L R+ G+ F I+         +   
Sbjct: 478 TFGHRAGDALLCQLALRLAGFLEERRQTGALGHFWLGRIGGDEFLIVASGRLTCEGLRRC 537

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +  +++    +    + V ASIG A +     +  ++L  A++AMY AK  G     
Sbjct: 538 GEDLIAAVSETYTIGSAHMAVGASIGVA-FAEEGCSYDDLLVRADIAMYEAKRHGRGTCT 596

Query: 694 SFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F         +R+ I+ DL  A++  E  + Y P + L D  +VG EAL++W HP+ G 
Sbjct: 597 FFTAEAAQRVQERLGIESDLRCALKAREFGVHYQPKVSLRDGRVVGAEALVRWHHPERGP 656

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   +F+ +AEE  +I  I LF+LER   +I +   + +   + + +N++   L D    
Sbjct: 657 VPPGKFIPVAEEAGLIPDIGLFVLERALEEIGALVARGHD--LAVAVNVSVLQLEDPTFA 714

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  ++     P  ++L  +E+V M   E  +  + RLR +G+  ++DDFGT  S L+
Sbjct: 715 RTVEDRLAAAGIPPRCLELEITETVAMRESEIIQGHIARLRMLGVRFSIDDFGTGYSNLA 774

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   P D +K + SL+ G   + ++  I+R+I+ +A ++    + + +  + D++ L  
Sbjct: 775 MLARSPIDALKLDRSLVDGVAGSNEQQTIVRTILSLAASLGFETVVEGVETDADLRFLIA 834

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
            G    Q    + P+  ++    L+
Sbjct: 835 EGATTAQGYLFSPPVPIDTFRTFLE 859


>gi|163802176|ref|ZP_02196071.1| sensory box/GGDEF family protein [Vibrio sp. AND4]
 gi|159173981|gb|EDP58791.1| sensory box/GGDEF family protein [Vibrio sp. AND4]
          Length = 1054

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/582 (19%), Positives = 225/582 (38%), Gaps = 18/582 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +       ++               ++   D              +LG    
Sbjct: 470  LFEARDITSRKAMEDKLYQREASLRNYYEQQPVMMVTLDNNNRVQEVNRFAQQLLGYQPL 529

Query: 444  SMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             M G     L   + +++  + R +L        G  + E   R AD Q  W+   IRP+
Sbjct: 530  DMLGQH---LSSFYCDEKALYPRQVLLQPQQVMHGVWRREIEYRHADGQSVWVRENIRPL 586

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +S+    + + +  DITE KK  + +   A  D LT   NR  F   L T L    +  
Sbjct: 587  RDSD----QLLIVGEDITETKKLAKQLEYQACYDLLTDTYNRNYFELELQTALREVESHR 642

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +   ++ +D+D+ K +ND +G   GD  +      + E+L    +LAR+ G+ F ++L 
Sbjct: 643  RVH-AMLYLDLDQLKVLNDTVGHDAGDAAIQFCASMLEEVLPDNSVLARMGGDEFAVLLK 701

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +    +      +           + ++ ++ S+G      +  T   +   A+ A +
Sbjct: 702  DCDEHCALNVAKQIITTLGEQIFRWEDTQLFMSCSVGIRIIDHTAETPQMVHAQADSACH 761

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE-EIVG 737
             AK +G N    F + +       ++      +  A+ +  L L    I+ L      + 
Sbjct: 762  AAKEQGRNRFNLFSLDNEELQHRQLEMQSVNLVHEALSSKRLELFAQRILNLSGGGSPLC 821

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++    +   +S   FM  +E   +   I+  ++ +      +  +          
Sbjct: 822  FEILVRIRDAQGHYLSPGVFMPASERYNIAHWIDKQVITQTLEWFEARPEVVRKLG-RCA 880

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++ + + + E  + + A +  ++    +I L  +E+  M N +++     R+R +G  
Sbjct: 881  INLSGQSMGNQEFIDFLLARLQLSVIPCEKICLEITETAAMSNIDQALDFFTRVRALGCL 940

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A
Sbjct: 941  VALDDFGSGLSSFGYLKRLPVDIVKIDGLFVRDINVNEMDRVMVRSINDLAKQMGKITVA 1000

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956
            + +  +     L  +G DY Q   +  P     ++ +LL+  
Sbjct: 1001 EFVENDQVRACLVELGVDYGQGYGIGHPKPLAELVDELLQSE 1042


>gi|288916948|ref|ZP_06411320.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288351657|gb|EFC85862.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 678

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 198/431 (45%), Gaps = 7/431 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPT-VMVIDIDKYKKINDVLGIAVGDDVLVS 594
           D LTG+P R+ FL      L          P  ++++D+D+ + IN  LG   GD +L S
Sbjct: 150 DGLTGLPGRRHFLKTAGQWLGGGHRAGGAAPAALILVDLDRLRDINGTLGHENGDRLLRS 209

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+ ++L   D+LAR+ G+ F  +L    +       A  +R+++  P++L +  +  
Sbjct: 210 VSDRLQQVLGADDLLARVDGDEFAALLRGV-DLPDAEGVARRIREALRTPVSLDDLRVQA 268

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
             S+G A +        E+++ AE AMY AK    G  V +          + ++ DL  
Sbjct: 269 EVSVGIAHFPEHGRNVLELMRRAEEAMYTAKGTHSGQRVYAPDCQLGSRASLGLRADLRE 328

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++  ++ L Y P + +    I G+EAL++W HP  G      F+   E   +++ +   
Sbjct: 329 ALDKGQIELRYQPKVDMRSGRISGVEALVRWRHPTGGLRPPDLFLPEMERAGLMELLTRR 388

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+    D + WR       + + +N+ +  ++D    + ++  +      PS + +  +
Sbjct: 389 VLDLALTDCVRWRAAGAT--LAVSVNVPASVIVDPGFVDLVRGELELHGLPPSALVVEVT 446

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E  ++   E+++  L  LR  G+ ++LDD+GT    L+YL  +P D VK +   +     
Sbjct: 447 EDGLITVLEKAQRTLAGLRDHGVRVSLDDYGTGLCSLAYLLELPADEVKLDQRFLRDIDR 506

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 I+RS + +A  +   I+A+ +        L    CD  Q   V+ P+    +L 
Sbjct: 507 DPSAAEIVRSTVSLAHALSLRIVAEGVETSRSWASLAAWQCDEAQGYFVSRPMTGERVLS 566

Query: 952 LLKERFPLVKN 962
            LKE    ++ 
Sbjct: 567 WLKEWDDRLRR 577


>gi|89093818|ref|ZP_01166764.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
 gi|89081948|gb|EAR61174.1| sensory box sensor/GGDEF/EAL domain protein [Oceanospirillum sp.
           MED92]
          Length = 782

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/431 (25%), Positives = 209/431 (48%), Gaps = 11/431 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I      ++LT +PNR S L  L   L           +++ +DI + + +ND LG 
Sbjct: 345 EQKISHQLKFNSLTNLPNRYSLLQTLDDKLKE----QGSAFSLLHLDIRRTRTVNDTLGY 400

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +GD ++  + +R+  L         L G+ F +I+ S  N  ++A++   + +++  P+
Sbjct: 401 QIGDLMIQEVGKRLVRLNANSQTF-HLDGDEFAMIIES-ANLSELANWQTKIEEAMDEPL 458

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDR 704
              +  + +   IGFA          ++L+ A+ A+ H K    N  +    + +  + R
Sbjct: 459 CGEDTLLHLQLQIGFARAPDDAKDPQQLLQKADTALSHGKREQRNFQQYLTEMDADANRR 518

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  DL +A+E ++L L Y P + L   +I  LEAL++W HP  G I    F+ IAE+ 
Sbjct: 519 LSLVNDLKIAIEQNQLCLFYQPKLDLNSGKIHHLEALVRWQHPLQGMIPPDAFISIAEQT 578

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I A++ ++L   A    +W +Q     + I +NI++ +L +    E ++ + S+    
Sbjct: 579 GQIDALSNWVLNEAACQYRTWSNQGLD--LSIAVNISADNLKNQRFTESLRKIWSQHQLP 636

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + + L  +ES V+ +PE +  +L  +R  GI L++DD+GT  S L+ L  +P   +K +
Sbjct: 637 ANALSLEVTESAVVSDPESAIHMLCEIRDQGIKLSIDDYGTGYSSLAQLKQMPVSELKID 696

Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +     +     I+RS I MA ++  +++A+ I  +  +  L    CD  Q   ++ 
Sbjct: 697 RSFVDKVHLSSDDQIIVRSTIRMAHDMGLSVVAEGIEDKDTLLWLQEHDCDLAQGYFISR 756

Query: 943 PLGFNSILKLL 953
           PL  +   + L
Sbjct: 757 PLPADEFSQWL 767


>gi|307721000|ref|YP_003892140.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979093|gb|ADN09128.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 614

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 224/442 (50%), Gaps = 15/442 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L      A+ D LTG+ NR+ F++ L + +     + +    +++ID+D +K IND L
Sbjct: 177 EYLLKSRFQAYHDYLTGLGNRRYFIEHLASSV---KENKDKYTYLLLIDLDYFKTINDTL 233

Query: 584 GIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSL----KIADFAIAMR 638
           G  VGD +L+ +++R+ +L     +I+ARL G+ F I+  + +       +  +F+  + 
Sbjct: 234 GHDVGDKLLIEVSQRLTKLSSVHHNIVARLGGDEFCILSDAFDTKELCLAEAEEFSNKIL 293

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K+I     + +  + ++ASIG +   + ++ +++ LK A++AMY AKH G + V  F   
Sbjct: 294 KTIKEAYFIEDSSLHISASIGVSIINNPQLNANDFLKEADIAMYEAKHNGRDDVIIFNDE 353

Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R    ++ I+  L  A+E +E++L Y P     + +I+G E L +W   + G +S   
Sbjct: 354 LCRVIEEKLQIERLLHFAIEKNEIFLQYQPQTTCKN-KIIGCEVLARWKSAQLGMVSPEV 412

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +  ++LE   + +  W          + +NI+ + LL+ +    ++ 
Sbjct: 413 FIAVAESTGYIIELGEYILEESIKTLQRWESMHMNLH-QLSVNISMRQLLNKDFTITVKR 471

Query: 817 LISKTLYS--PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           L  K   +   +++    +E+    + +R   ++  L+K  I  ++DDFGT  S LSY+ 
Sbjct: 472 LFEKYNVADFKTKLIFEITETSTSEDLKRLISIINELKKYNIQFSIDDFGTGYSSLSYIR 531

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            IP   +K + S +    +KR A +++SII ++KN+   I+A+ +  +     L  + CD
Sbjct: 532 DIPAYELKIDKSFIAELDDKRQASLVKSIIDISKNLNLRIVAEGVEAQEQKDFLANLECD 591

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q    + PL      KL++ 
Sbjct: 592 LYQGYLFSKPLLKEDFEKLMQN 613


>gi|220934288|ref|YP_002513187.1| putative diguanylate phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995598|gb|ACL72200.1| putative diguanylate phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 568

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/440 (22%), Positives = 191/440 (43%), Gaps = 11/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +++ + I   A+ D LTG+ NR+ F  RL   L  ++  +     ++ +D+D++K IN
Sbjct: 129 AHRRAQQTIEHLAYHDPLTGLVNRREFEARLHQALRTASEREQ--HALLYVDLDQFKIIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  L+  +   ++  D LARL G+ FG++L       +    A  +   
Sbjct: 187 DTCGHEAGDGMLRQLSVLLRTPIRDSDTLARLGGDEFGVLLSGCR-LDEAQQVAGRIVDL 245

Query: 641 IAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +        ++   + ASIG      + + +S++L+ A++A Y AK RG   V  +R   
Sbjct: 246 VRDFRYVWRDKSFLIGASIGLVMLDDANLRASDVLRMADMACYAAKDRGRGRVHIYRADD 305

Query: 700 F----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                R + +     L  A+E +   L    I  L        E L++    +   I   
Sbjct: 306 QELLQRHNEMQWVGRLNQALEENRFRLYRQCITPLGPHGSSHCEILLRMLDERGELIPPG 365

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGM 814
            F+  AE   ++ A++ ++L      +   R Q   +       N+++  + D      +
Sbjct: 366 AFIPAAERYNLMPALDRWVLCNAFHWLARCRRQGAPLNSEMFFFNLSAATISDESFYAHV 425

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +    PS +    +E+  + N   +   + ++R++G  + LDDFGT  S  SYL 
Sbjct: 426 SHALQEHDLPPSMVGFEITETAAITNLGSALKFIEQVRQLGCRIALDDFGTGMSSFSYLR 485

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            IP D +K +GS +    E    +AI+ +I  +        IA+ +  +   + L  +G 
Sbjct: 486 TIPADFIKIDGSFIRDMDEDAMNLAIVDAINRIGHVAGLKTIAEFVETQAIRERLVEVGV 545

Query: 933 DYIQDSHVASPLGFNSILKL 952
           D+ Q   +  P+  ++   +
Sbjct: 546 DFAQGYGIQRPIPLDAAQSM 565


>gi|114321215|ref|YP_742898.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227609|gb|ABI57408.1| diguanylate cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 584

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/564 (21%), Positives = 239/564 (42%), Gaps = 29/564 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A   +       D               L  ++  +      +   +   D    +  L 
Sbjct: 24  AFRLAPVAQLILDEGGTIHALNEQARAFLEASAEPLRQRP--FWQLMVDGDAVRLQRALA 81

Query: 470 SFVGYRRGRL----------QYEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +       R           + +  VR     +    +  + P +  + ++ R    A +
Sbjct: 82  NQRPEAGVRRYCGLQLAAGCRVDLSVRHVGAGRLLCALEHVPPGTGDDKEVARL---ARE 138

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + EQ+ +LE     A  D LTG+PNR  F   L   L  +  +D  +  V+V+D+D +K 
Sbjct: 139 VREQRTALER---LAHYDALTGLPNRWFFERFLDNQLQRAGDNDGHQIAVLVLDLDHFKA 195

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G + GD VL   TRRI   ++  D+++R+ G+ F ++L         +  A A+ 
Sbjct: 196 VNDRFGHSEGDQVLKEATRRILACVRDVDMVSRIGGDEFVVVLGRLRGRGGASRVARALI 255

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +S++ P  +  R   +TAS+G A +     T  ++++ A+LAM+ AK RG N   +F   
Sbjct: 256 RSLSRPFTVGARSHRLTASVGVAFYPKDGETVEDLIRRADLAMFQAKDRGRNGWAAFDYE 315

Query: 699 SFRS--DRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIV--GLEALIQWDHPKWGNI 752
                 +    K  L   ++     L + Y PI+RL D       LEAL++        +
Sbjct: 316 HEHHLLEEDHWKGLLWRTIDAPGRYLTMNYQPILRLRDGRPRPWALEALLRVQGHDQQTL 375

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +   +  AEE  MI  +   +  RI  ++ + R +     + + +N+++   LD  L  
Sbjct: 376 DTGTLVRAAEEHHMILPLGEAIFARICAEVAAMRQEG--MRLPVTVNLSADQFLDPCLVG 433

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            M  +        + +    +E+ ++ N   +R ++  L+  G  + LDDFG+  + LS 
Sbjct: 434 RMDRVCQAHGVPMNALCFEITETALVRNLSGAREMVQALQAAGALILLDDFGSGYASLSQ 493

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K +   +   G + +  A++R+I+ MA+ +   ++A+ +        L R 
Sbjct: 494 LHSLPVDVLKIDAGFIAEVGRSPQAEALIRAILAMARALGIDVVAEGVETNAQRVWLERE 553

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           G   +Q  + + PL   ++   ++
Sbjct: 554 GVQGLQGYYFSRPLPREAVQDWVR 577


>gi|124516119|gb|EAY57627.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum rubarum]
          Length = 884

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/565 (22%), Positives = 253/565 (44%), Gaps = 14/565 (2%)

Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +  R  L   A+          +       +    + +      S+ G   +   +  +
Sbjct: 301 EEHHRIRLFRGAMESGRAPSLIVNPDGTIAWSNRAFSEMTRTDLKSILG--EDLRQFFPL 358

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D      +              E+    AD       + + P+ N +     ++    D
Sbjct: 359 SDWGRQGKLPGE--RGSDEEFSGEWCGVTADGTAFLAEVLVSPIRNDSLKRTHFLVHMKD 416

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T +++  + I   A QD LTG+ NR  FL      L+        R  +  +D+D +K+
Sbjct: 417 VTSEREKEKEIHRLAHQDPLTGLLNRNGFLKLCREELERDFRSGK-RLALAFLDLDGFKE 475

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG A GD  L  L+RR+ E+++    L R+ G+ F +++  +N+          + 
Sbjct: 476 LNDTLGHAAGDRFLEILSRRMLEVMEGKGALGRIGGDEFVVLVEEKNDL-LFERLFTDLL 534

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + ++ P+   E +   T S+G A +    +T  E+L+ A+L MYHAK  G N +  F  +
Sbjct: 535 EQVSRPVVFEEGQFQTTVSVGVAIYPEDGLTVEELLRKADLTMYHAKSAGKNTIRFFEKA 594

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +S R   +    L  A+   E  L + P + + +  ++G+EAL++W+ P  G +  + 
Sbjct: 595 IEQSVREWYEKGTALRQAIARKEFELYFQPQVDVRNNRLMGVEALLRWNRPDRGMMLPAS 654

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  +++E     +  W  +   P  ++ +N++++          +++
Sbjct: 655 FIPLAEETGLIHPVGDWVMEEALSLLEKWERK-GYPSFWLAVNVSARQFRSESFWSDLES 713

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
              +   S SR+ L  +ES+++G+   S   +  LRK G++  +DDFGT  S LSYL  +
Sbjct: 714 RFDRYPASASRLSLELTESLLVGDSGVSAGRIASLRKRGVTFVIDDFGTGYSSLSYLTRL 773

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D++K     +      E+   ++  I  MA+N++  +I +      +I+ L  +GC  
Sbjct: 774 PVDSIKIPQEFVLRMKENERDRKMVEIIAHMARNLDLVLIGEGAESGQEIRMLRDLGCFV 833

Query: 935 IQDSHVASPLGFNSILKLLKERFPL 959
           IQ   ++ PL  +   + L++  P 
Sbjct: 834 IQGFSISRPLSLSGFERFLEQGPPG 858


>gi|237749000|ref|ZP_04579480.1| GGDEF domain-containing protein [Oxalobacter formigenes OXCC13]
 gi|229380362|gb|EEO30453.1| GGDEF domain-containing protein [Oxalobacter formigenes OXCC13]
          Length = 1960

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 129/621 (20%), Positives = 259/621 (41%), Gaps = 38/621 (6%)

Query: 350  WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
            W       ++    +D +       LV I+ +     ++ +     F +      ER   
Sbjct: 1362 WASLTVFPLSGDAGSDEMY------LVFIMDIDARKQVEEIALQNAFLEKQRFADERYKT 1415

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN------WLP--YIHINDR 461
             V  +  +V++W +  +    + +I            G   +      W     IH +D 
Sbjct: 1416 IVEQTNTLVFEWVVDTNERYISQEI-------PKRFAGNYDDRDIMWIWRDDHVIHPDDM 1468

Query: 462  DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              F   L          ++   R +  D  + W  + +  +   +G   RYIG  ND+  
Sbjct: 1469 ILFEQFLKGIRKQN--HVEMVARYKKRDGSYAWNRVTLSCLYAQDGKPHRYIGTINDVDN 1526

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
              +S++ +   A  D LTGI N Q+F DR ++++     +   +  ++ +DID++K IND
Sbjct: 1527 ATRSVQTLKYRAEYDVLTGIYNMQAFYDRASSMM---RNNPERQYYIVRLDIDRFKVIND 1583

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            + G+  GD +L ++   + + +K      R+SG+ F   +    +  +I  F   +   +
Sbjct: 1584 LYGLEEGDRLLKTIAGLLSDRMKENAAYGRISGDIFCACVAY--SREEIIHFVQDVAARL 1641

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SS 699
            A    L  + I    S G     + +   + +   A LA+   K         +      
Sbjct: 1642 AE-YPLASKIIP---SFGICKVDNVQTPINVLCDWANLALKTVKGSFYPIYAFYDETLRH 1697

Query: 700  FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                   I+ ++ LA+   E  +   P + +   +I+G E L++W+HP+ G I    F+ 
Sbjct: 1698 QILSEKKIESEMDLALLRKEFLMYLQPKVDIATSKIIGAEGLVRWNHPEEGLIPPDRFVP 1757

Query: 760  IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            + E+   I  ++ ++ E+    +  W D     P+ + +N++   + DN+L E +  LI 
Sbjct: 1758 LFEKNGFIIQMDEYIWEQACICLKRWVDMGL-EPVPVSVNVSRMHIHDNKLNEKLLELIR 1816

Query: 820  KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            K    P  ++L  +ES+   N E     + +L++ G S++LDDFG   S L+ L  +  +
Sbjct: 1817 KYDLPPELLELELTESIFFENEELLVGTIRKLQQDGFSISLDDFGAGYSSLNMLKDLSIE 1876

Query: 880  TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            T+K +         T +   ++   I +AK +   IIA+ +  +   + L   GC + Q 
Sbjct: 1877 TIKLDRGFFNEVIVTPRGKTVVAHTISLAKALNINIIAEGVENQEQAEFLLNAGCPFAQG 1936

Query: 938  SHVASPLGFNSILKL-LKERF 957
             + + P+      +L  ++++
Sbjct: 1937 YYYSMPVPIGKFEELAFRQQY 1957



 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 140/312 (44%), Gaps = 15/312 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q I  + ++  +    S DI +++D   D V       T+ G         I  
Sbjct: 120 EILELKQLIAFEKQKLDILTGLSEDISFEYDFATDTVWFADKYKTVFGSNP-----VIER 174

Query: 452 WLPYIH----INDRDN-FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           +   +     I+   N FR      +       Q   RV    N++ W  +    ++   
Sbjct: 175 FRERLSGNEFIDSLTNVFRNQFIDMLSSSGETSQS--RVDTVSNEYKWFSLYCMQINGEK 232

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G+ ++ +GI  DI  QKK    +   +  D++TG+ N+ +  + + T +  + +D     
Sbjct: 233 GEPVKALGIIRDIDRQKKEQLQLFDKSRVDSMTGLLNKSTTEESVKTAIATATSDS--IG 290

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M+IDID +K +ND LG   GD+V++ + R++    +  D + R+ G+ F + +    +
Sbjct: 291 VLMMIDIDLFKNVNDTLGHLAGDEVIMQIARQLRRTFRENDFIGRVGGDEFIVYMQDVKD 350

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           ++ + + A A+ +S+       ++  T+T SIG ++ T    T +E+ + A++A+Y+AK 
Sbjct: 351 TVFVYEKAKALCESVEQMFENHQQNYTITISIGISN-TEQANTYNELYRQADVALYNAKA 409

Query: 687 RGGNHVESFRVS 698
            G N    +   
Sbjct: 410 NGRNQSVFYGQE 421



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 76/181 (41%), Gaps = 11/181 (6%)

Query: 365  DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             I   + V  L    ++  F + +++ A     +    + +R +LA+  + + +++ D+V
Sbjct: 1092 YIWMFSRVLFLKEDDVVTAFVLARNITAQKKIEEERNIETQRFNLAIRNTYNEIYEVDLV 1151

Query: 425  RD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI-----LDSFVGYRRG 477
             +  ++T +     ++ L          +   ++H +DR  F+       L       + 
Sbjct: 1152 NNTCKLTYSNS-QNLMSLPEEDSLDKFAD--RFVHPDDRPFFKNSIVGDNLSKEFASGKN 1208

Query: 478  RLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQD 536
             +  ++R    D Q++W+   I P  NS +    R +    DI+E+KK  + +  N   D
Sbjct: 1209 EIHGDYRRLGYDGQWYWVSAIIVPEYNSYDSSPNRGLCFIRDISEKKKQEQQLRINEQYD 1268

Query: 537  N 537
            +
Sbjct: 1269 H 1269



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 9/160 (5%)

Query: 383  GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILG 439
            G   I+ +       Q +  + E+   A+    D +++ ++V D    V           
Sbjct: 1244 GLCFIRDISEKKKQEQQLRIN-EQYDHALRQIYDELYEINVVTDSYRIVYHVEGKYKTPA 1302

Query: 440  LASGSMHGPIRNWLPYIHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHW 494
            ++              IH  D + F    D                 EFR    D  + W
Sbjct: 1303 ISGELTSAVHNIARDMIHPEDANRFLEFFDIDNMRRSFSEGLDYRIAEFRKLLQDGSWRW 1362

Query: 495  MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              + + P+S   G    Y+    DI  +K+  E  L NAF
Sbjct: 1363 ASLTVFPLSGDAGSDEMYLVFIMDIDARKQVEEIALQNAF 1402


>gi|320158887|ref|YP_004191265.1| EAL domain-containing protein [Vibrio vulnificus MO6-24/O]
 gi|319934199|gb|ADV89062.1| EAL domain protein [Vibrio vulnificus MO6-24/O]
          Length = 591

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 203/433 (46%), Gaps = 9/433 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
               ++  D LT +PNR++F   L  +  L+         ++ IDID +K+IN+  G   
Sbjct: 162 KYREDSRTDYLTQLPNRRAFYADLNQVESLAQQ--GRNCALLKIDIDAFKEINESFGHEQ 219

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIADFAIAMRKSIAMPIN 646
            D +L   +RR+ +       + R+ G+ F +++  +++   ++      +++++     
Sbjct: 220 ADLLLKRFSRRLRKNTLGFGQVYRMEGDEFAVLVYEKHSINDEVDALLDKLKRALTAAFE 279

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDR 704
           L      ++ + G A +  S       L+N+++A   AK RG   V  +  +       +
Sbjct: 280 LERGSYQISYATGIALFNESMTNLDIWLRNSDIAAQKAKTRGRGQVRWYDEALLDETIRQ 339

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+ +L  A+E  +  LVY P + +   EI G EALI+W HP+ G I+  EF+ IAE+ 
Sbjct: 340 HQIERELDKAIELKQFSLVYQPKVSITTGEITGAEALIRWQHPELGTITPFEFITIAEKT 399

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  I  +++    +    W D      I + +N+++     +++   ++  ++++   
Sbjct: 400 KQIIPIGRWVILEACQQAKKWLDLGY--KIPVSVNVSTVQFAHDDIELQVRTALAESHLP 457

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S ++L  +E+V+M  P++   +   LR  G+++ +DDFG   S L+YL  +P D +K +
Sbjct: 458 ASHLQLEITETVLMKEPKKLIEICHNLRCEGVTVAIDDFGIAYSSLNYLKQLPIDVLKID 517

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +           ++R+I+ +  N++  I+A+ +  E     L    CD  Q    + 
Sbjct: 518 KAFIDDCVDNHHDHMLVRTIVQLGHNMDKKIVAEGVETEEQRLLLVSEQCDEFQGYLYSK 577

Query: 943 PLGFNSILKLLKE 955
           PL      + L +
Sbjct: 578 PLDVEEFNRQLLQ 590


>gi|94498198|ref|ZP_01304759.1| hypothetical protein SKA58_13972 [Sphingomonas sp. SKA58]
 gi|94422328|gb|EAT07368.1| hypothetical protein SKA58_13972 [Sphingomonas sp. SKA58]
          Length = 561

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/449 (25%), Positives = 216/449 (48%), Gaps = 15/449 (3%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +  ++ + +L+ +   A  D +TG+ NR SF  ++   L     + +    +  ID
Sbjct: 102 VAMQSLFSQVRTNLDHVQSLALFDQVTGLANRTSFCRQVERHLT--GRNTDAMAALFFID 159

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-------FPDILARLSGNRFGIILISEN 625
           +D +K +ND LG A GD +L  +  R+ E++           ++ RL+G+ F +      
Sbjct: 160 LDGFKGVNDSLGHAAGDQLLARVAGRLREVVMAQVSAGTGDAVIGRLAGDEFTMFFPFLP 219

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A  A A++ +++   +L  + + + ASIG A +     T S +L+ A++AMYHAK
Sbjct: 220 GPSAAARIARAVQFALSERFDLGSQHVELGASIGIACYPDHGDTLSALLRAADVAMYHAK 279

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           H+G    E +        +DR  ++ DL LA++  E  L + P I ++  + V  EAL++
Sbjct: 280 HQGRGRAEIYSSELALEAADRAELERDLLLALQRDEFLLEFQPQIDVISGQAVAAEALVR 339

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+   +    F+ +AEE   I A+  +++ R+      W +        I +NI+++
Sbjct: 340 WAHPERDLVMPGTFVPVAEESGTIVALGDWVMSRVCETAARWAEAGQRQ--RIAVNISTR 397

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           +L   +    ++  ++      S + L  +ESV M    R    L  +R  G+ + +DDF
Sbjct: 398 ELAQADFFLRLRHAMATHRTPASMLALEITESVAMNMEPRILDQLAAMRTEGLHIAIDDF 457

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+ L  +P D VK + SL+     + +   I  +++ + + +   ++ + +  E
Sbjct: 458 GTGYSNLARLRELPVDRVKIDRSLVRDIASSAEARTICSAVVGLIQGLGMEVVIEGVENE 517

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +  L  +GC   Q  H+A P+   S L
Sbjct: 518 AQMDVLRVIGCTLFQGYHLARPMDEQSYL 546


>gi|260554772|ref|ZP_05826993.1| diguanylate cyclase domain-containing protein [Acinetobacter
           baumannii ATCC 19606]
 gi|260411314|gb|EEX04611.1| diguanylate cyclase domain-containing protein [Acinetobacter
           baumannii ATCC 19606]
          Length = 697

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 113 FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 172

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   + +  +    + P+ 
Sbjct: 173 EKKFGMR-WLDLLPPHIRKRGRVALKKALQGKVARFAGMSCL--PNQEPEYWDNMLTPIQ 229

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 230 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 289 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDHERCSVARLGGDEFAVIVS 348

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 349 HLENENNVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 408

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 409 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 467

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 468 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFEPLPVSLN 526

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 527 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 586

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 587 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 646

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 647 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 685



 Score = 44.9 bits (105), Expect = 0.071,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 9   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 +   R R++++ R+    + + W  I I+          N   + ++ I  DI 
Sbjct: 66  NKWLDAIR-LRSRIEFKCRLLHKTHYYRWCKISIQLSKYHESSQENEWFISFLDIDQDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQSLRKDIDIQ 136


>gi|290509678|ref|ZP_06549049.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
 gi|289779072|gb|EFD87069.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella sp. 1_1_55]
          Length = 720

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 220/439 (50%), Gaps = 16/439 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D L+ +PNR++ L RL+ + +    D      V+ ID+D +K +ND  
Sbjct: 292 RGERQAREIAMIDWLSRLPNRRALLLRLSQVCETGKHDIQC---VVFIDLDGFKDVNDNY 348

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD ++  +   +   +    +LAR+ G+ F + +       + A FA A  + +  
Sbjct: 349 GHDVGDALIRHIASALQTRVPTGAMLARMGGDEFAMAVSGAKAIDRAAAFAWAALELLKA 408

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P+ L +R+I + ASIG AS   ++ +S+E+ + A++AMYHAK  G      +  +    R
Sbjct: 409 PVTLSKRKIYIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDDALDAVR 468

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++MI+  +   +E  E  + Y P++      + G+EAL++W     G ++   F+ IA
Sbjct: 469 RHQLMIENGIRQGLEQDEFEVWYQPVVDADTLAMTGVEALLRWPRRPQGALAPDAFIAIA 528

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I A+  F+L+R   D+        +  + + +NI+     D      +   ++  
Sbjct: 529 ESSGLIDALGQFVLQRACSDLQ------PVDDLLLSVNISPAQFRDPAFENRVMKTVAAC 582

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + PSR+++  +ES V+ NPERS+ ++  L+  GI++ LDDFGT  S + YL    FD++
Sbjct: 583 RFPPSRLQVEVTESYVLENPERSQAVVENLKAQGIAVALDDFGTGYSSIGYLRRFRFDSL 642

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL         A  ++R  + +A+ +  T++A+ +     +  L R GCD  Q  +
Sbjct: 643 KIDKSLAGRVDSDEQAAEMVRGTVRIARALGMTVVAEGVEDPQQLALLRRAGCDRFQGFY 702

Query: 940 VASPLGFNSILKLLKERFP 958
            + P+    I+ LL+ R P
Sbjct: 703 FSKPMP---IVDLLQRRQP 718


>gi|213420659|ref|ZP_03353725.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 527

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/533 (21%), Positives = 233/533 (43%), Gaps = 25/533 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP 454
           +Q +    +     V  +  ++   D                GL    + G    + ++ 
Sbjct: 11  AQELSFAEQ----IVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMS 66

Query: 455 YIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                 R+    R  +++F        + E  ++    Q  ++       + S  + +  
Sbjct: 67  R-----REAVASRHYIENFFRNGNA-YEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFL 120

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D +TG+PNR +  + +   +  +         ++ +D
Sbjct: 121 ICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQ---VGIVYLD 177

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KKIND  G   GD +L +++  +   L+   +LARL G+ F +++    +   +  
Sbjct: 178 LDNFKKINDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLVAH-TSQAALEA 236

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   +  P  +   E+    +IG +        S  +++ A+ AMY+AK  G    
Sbjct: 237 VASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQF 296

Query: 693 ESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    D   +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 297 CVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWR-GEVRSLEALVRWQSPERG 355

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   EF+  AEE  +I  +  +++  + R I  WRD+     + + +N +++ L D  L
Sbjct: 356 LIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGIN--LRVAVNFSARQLADQTL 413

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++  +    +    I +  +ES ++ N   +  ++ +  ++G  + LDDFGT  S L
Sbjct: 414 FTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL 473

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           S L   P D VK + + +    ++    +++R+I+ +A+ +   +IA+ +   
Sbjct: 474 SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENA 526


>gi|152992568|ref|YP_001358289.1| hypothetical protein SUN_0975 [Sulfurovum sp. NBC37-1]
 gi|151424429|dbj|BAF71932.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 625

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 210/439 (47%), Gaps = 13/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L+     A  D LTG+ NR+ F+D +  ++      +     +++ID+D +K IND L
Sbjct: 176 QMLQKNYYQAQHDALTGLFNRRYFVDYMDQLIKRVHYSNKFAY-ILLIDLDYFKTINDTL 234

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF----AIAMRK 639
           G  +GD VL+ +  RI E      +++RL G+ F I+           +     A  + +
Sbjct: 235 GHEIGDKVLIEVASRIKEFCGEDHLISRLGGDEFTIVSEEFEYMEHCREISYTFAQKLLQ 294

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
            +  P  +    + ++ASIG      +   +   +K A++AMY AK +G + +  F  + 
Sbjct: 295 RLKEPYLIDRHHLYLSASIGVNGIGRTSSEARHFIKEADIAMYEAKAQGRDGIILFNEAL 354

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++  L  A+E++E+ L Y P +     ++VG E L++W + K+G I  SEF
Sbjct: 355 AKRVEYHLELERKLYFALEHNEIDLRYQPQMNQE-RQLVGCEVLVRWKNDKFGFIPPSEF 413

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I  +  +++E   + + +W +Q      F  IN++ +     +    ++ L
Sbjct: 414 IGIAEKTGLIIELGHYIMEEAFKTLKTWEEQGIDLEQF-SINLSVRQFFHADFLGQVEML 472

Query: 818 ISKT--LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             K    ++  +I    +E++++ +  +   ++ +LR+IGIS ++DDFGT  S L  L  
Sbjct: 473 SEKYLNDHTRKKIIFEVTETILIEDMYKIIAVMNKLRRIGISFSMDDFGTGYSSLGSLRQ 532

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + + ++  +  E    ++ +I+ MAK      +A+ +  E     L   GC 
Sbjct: 533 MPIDELKIDRTFVSHISKYESDKLMISTILAMAKIFNLKTVAEGVENEEQFDFLRDNGCH 592

Query: 934 YIQDSHVASPLGFNSILKL 952
             Q  + +  L   +    
Sbjct: 593 IFQGFYFSKALEQKAFETF 611


>gi|291614729|ref|YP_003524886.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291584841|gb|ADE12499.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 690

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/411 (25%), Positives = 203/411 (49%), Gaps = 10/411 (2%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L  +   +  +         V V+D+D ++++N+ LG   G+ +L  +  R+   L    
Sbjct: 260 LREIEREIAEAQAQQ-YGFAVAVLDLDHFRRVNNALGHNAGNVLLAEVAERLRYNLPPHA 318

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +  L G+ F ++L    +       A  +   +  PI +L+R+ T+TAS+G   +    
Sbjct: 319 HMTGLEGDGFLLLLPELASEQ----VANHLLACLRSPITVLDRQFTITASMGVVRYPQDG 374

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            ++  +L+ AE+++Y AK  G + VE F   +S        ++ +L  A+   EL L Y 
Sbjct: 375 ESAEALLRCAEISLYRAKEHGRDRVEFFAPEMSHKAERTATLEVELRAALGRDELTLYYQ 434

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++     +I GLEAL +W  P  G +   +F+ +AE+  +I+ ++ ++  +  R +  W
Sbjct: 435 PLVDSHSGQIRGLEALSRWHSPLLGTVPPDQFIPVAEQSDLIRILDEWVFLKACRQLKVW 494

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           R+Q   P +F+ +N+     L+  + E   A +      P  +++  +E ++M +    R
Sbjct: 495 REQL-CPDLFMAVNVCPSRFLNAGVVEHTIATLRAQELPPECLEIEITERMLMDSDPIVR 553

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903
             L  LR  G+ +++DDFGT  S LSYL  +P D +K + S +    S+ ++  ++ +I+
Sbjct: 554 ERLTELRNHGVRISIDDFGTGHSSLSYLSRLPVDVLKIDRSFVQNVTSSSEQSVLVEAIV 613

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            MA  +   ++A+ +  E + + L   GCD +Q   +  P    +I +LL+
Sbjct: 614 AMAGKLGLHVVAEGVEQESEKRFLMSCGCDLLQGYLIGHPEPPENIAQLLQ 664


>gi|192291950|ref|YP_001992555.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodopseudomonas palustris TIE-1]
 gi|192285699|gb|ACF02080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Rhodopseudomonas palustris TIE-1]
          Length = 873

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/422 (25%), Positives = 202/422 (47%), Gaps = 8/422 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +S   I   A+ D LTG+PNR    D +      +A        +  +D+D +K IN
Sbjct: 407 ERMESRAQIARLAYFDMLTGLPNRARLRDLIADA--TAACPHGRTVALAFLDVDNFKDIN 464

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD+ LV   RR+ + ++  D++ RL G+ F ++L +     +I      + ++
Sbjct: 465 DTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDEFVVVLPN-REPAEIEPVVARINEA 523

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P  L   ++ ++ASIG + +  +      ++  A+ AMY AK  G +    F     
Sbjct: 524 LMLPFALCNSQVPMSASIGVSLYPDNATDIDSLINQADTAMYRAKRSGRSTYRLFNCDMH 583

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +    +     L  A+ N+ L L Y P IR  D  + G+EA+ +W  P  G +  ++F+
Sbjct: 584 GAAEQRMAYAAALRSALANNRLGLHYQPQIRTSDGALHGVEAMARWHDPVLGPVPPTKFI 643

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I  + +    R +  WRDQ    P  + +N++  +  +  L   +   +
Sbjct: 644 PLAEECGLIDQIACWSIREACRQMRVWRDQGLEVP-SVSVNLSPINFENAALPTLVADTL 702

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P  + L  +E V   N   +   +  LR+IG+ L+LDDFGT  S L+ L  +P 
Sbjct: 703 ATYHLPPEALMLEVTEGVAQDNRSAAHDTMAALRRIGVGLSLDDFGTGYSNLNRLAQLPI 762

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   M+    +    A++ +++ + +++  +++A+ +      + L+ +GCD  Q
Sbjct: 763 RELKIDRGFMSELETSPTARAVVTTVVRVGQSLALSVVAEGVETTAQFQLLSDLGCDVAQ 822

Query: 937 DS 938
             
Sbjct: 823 GF 824



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 403 DGERQS--LAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
           + ER+     +    D     V   D     + T     ++ G ++    G  I + L  
Sbjct: 123 ELERRKGIELLTSIADRTTRAVLVTDPELKLLYTNAAFTSLFGYSAEDAKGQNIIDLLSG 182

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H N R      L  ++    G  + E  V   +    W+   ++ + N+ G I +   +
Sbjct: 183 RHTNRRT--IAGLKRWIADAEGG-EEEILVYDQNGDEIWISADVKALRNAQGRITQVFAL 239

Query: 516 ANDITEQKKSLE 527
             DI+E ++   
Sbjct: 240 LTDISETRQLRM 251


>gi|254787736|ref|YP_003075165.1| ggdef domain/eal domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237686573|gb|ACR13837.1| ggdef domain/eal domain protein [Teredinibacter turnerae T7901]
          Length = 991

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 220/441 (49%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++  +   +   A++D +T +PNR S  + L  ++   A +D        +D+D +K IN
Sbjct: 545 QRLDAESRVRRMAYEDYVTRLPNRASLHEHLAKVVRDCAANDWGATA-FFLDLDHFKTIN 603

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF---AIAM 637
           + LG  VGD+VL  +  R+ +       +AR  G+ F ++  S+++ +        A  +
Sbjct: 604 EALGHDVGDEVLRLVGLRLRDHFADSCFVARAGGDEFVLVQTSQSSDISALSIDVQANKV 663

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++ PI L ER I++  S+G         T  ++++  + A++ AK  G N    +  
Sbjct: 664 INLLSKPIMLGERTISIGTSVGVIMIPKHGNTILDIMRRGDSALFKAKQAGRNCYAVYDP 723

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +   +R+ +++ L +A+E ++  + Y P +      +VG E L++W HP+ G IS S
Sbjct: 724 RMQKSIEERMQVEKGLRIALEQNQFGIFYQPKVD-ASGRVVGAEGLVRWSHPEHGFISPS 782

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  I  +++E IA D++ W+D    P   I INI++      +  E   
Sbjct: 783 VFIPVAEETGLIHLIGEWIMEAIAGDLVRWQDMKIEPFGDIAINISAWQFGRADFIEKTL 842

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A I        ++ +  +E+ ++G+   +R+ L +LR  GIS+ LDDFGT  S L+YL  
Sbjct: 843 AGIRLNNIRVEQLSIEVTETAILGDMGTTRVKLNQLRNAGISVMLDDFGTGYSSLAYLKD 902

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P D  K + + + G    +   ++RS++ + K++   ++A+ +  +    +L  MGC  
Sbjct: 903 LPLDGFKIDRTFVEGLGDAQAEPLVRSMLSIGKHMRLKVVAEGVESKEQFDKLKAMGCKL 962

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A P+  +  L  +K 
Sbjct: 963 FQGYLFAKPMPVDEFLMWVKN 983



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 110/394 (27%), Gaps = 50/394 (12%)

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           +    +      G  I  A L+A  L       R  +      +   +  +      +L+
Sbjct: 18  FMQIADPLFYISGGFIAFAGLMAFLLARVGFSPR--LFSYFALLCGAIASFQFATAAYLA 75

Query: 241 KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI------- 293
                 +   L W+  S   +    + F+ +Y  +      +      G+A +       
Sbjct: 76  ANSFSSAVAALHWQTASLAFVIPLGVGFVSLYTGFGHHRKALSLGAVVGVAFLVLDHLSS 135

Query: 294 -AILFCMSFYYPMVTA----------------SIARITLASIVLYYTYFIIYHGMKGYER 336
            +I F  S ++                       +   +  +   +     +     ++ 
Sbjct: 136 ASIRFVGSVHFETFVTPWGESLHRIQGSMGWQGFSLYMVGVVFFLFCVQRGWALWHNHDS 195

Query: 337 AVLLIPAWILIFIWFIGLWMAI-TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT-- 393
             L   ++++I    +   + +     D+  I       LVL+V       I+ +LA   
Sbjct: 196 RALFFNSYVVIQFGSVAYGVVVDFGLADSFKIIGFGFLVLVLLVTTSMMVEIRSLLAELG 255

Query: 394 ---------GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LAS 442
                       S+ +  + +R S  V  S   +   D     +        + G  L  
Sbjct: 256 TSKKQLNLERSASEVLKVNQQRLSQVVALSPHSIQLVDTNGKLLQQNRTAGQLWGHTLQL 315

Query: 443 GSMHGPIRNWLPYIHINDRDNFR---TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           G     +  W     +    +      +L+  +                 +   W+  +I
Sbjct: 316 GDNLFTLAPWRELRLVELVASVINRGEMLERVLEVGAESF-------RECDHNRWVRFKI 368

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            P+    G       IA DIT ++     +   A
Sbjct: 369 FPVVGRLGRRDSVTLIAEDITREQSVENTLKTLA 402


>gi|170732515|ref|YP_001764462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
 gi|169815757|gb|ACA90340.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia MC0-3]
          Length = 611

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 241/549 (43%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTPALEGLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 121 MCIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +  D      ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 178 DNLSALVPALMAAQQTADEDGTC-AALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKA 236

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 237 LVTPNERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDGQGLALQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E     L+ MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 596 LARRFEAQQ 604


>gi|71282577|ref|YP_270608.1| response regulator/GGDEF domain-containing protein [Colwellia
           psychrerythraea 34H]
 gi|71148317|gb|AAZ28790.1| response regulator/GGDEF domain protein [Colwellia psychrerythraea
           34H]
          Length = 566

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 214/434 (49%), Gaps = 7/434 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S +     A  D+LTG+ NR  F + L   +  +  +  +    ++ID+D +K +ND
Sbjct: 133 LYQSYQRTKELAEHDSLTGLANRYYFDESLVKDIKSNQREKKILAL-LLIDLDNFKYVND 191

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  +GD +L+ + +RI   L+  ++ ARL G+ F I L    +    +  +  +  ++
Sbjct: 192 NFGHDIGDKLLIEVVKRISNCLRGNELFARLGGDEFAITLTRLPSINGASIVSQRIINAL 251

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +    I   ASIG ++       + E+ K A++AMY AK++G N    F      
Sbjct: 252 REPFQIDNHWIQSGASIGISTCPWDSSNTKELFKFADIAMYRAKNKGRNQFSFFEEEMQN 311

Query: 702 SD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +  I+  L  A+ N + YL Y P+I    + I G+EALI+W+      IS  +F+ 
Sbjct: 312 EFLEQFKIETQLRSAIMNDDFYLHYQPVIDAKSKTITGVEALIRWNI-DGDMISPDKFIP 370

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I  I  +++++  + +  W       P+ + IN +S  L D  L + ++  +S
Sbjct: 371 IAEKSRLIIDIGKWVIQQAIKQLSLWNK-NRSSPLTMAINFSSVQLADEYLFDFIRDCLS 429

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +   I++  +E+ ++  PE++  ++  +  +G  ++LDDFGT  S LS+L   P +
Sbjct: 430 QHNVAAHLIEVELTETALIIEPEKTVKIIQGISDLGCKVSLDDFGTGFSSLSHLHSFPIN 489

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + +LM  ++       +L  ++ M K+++  I+A+ +  E D+    ++G   IQ 
Sbjct: 490 IVKIDRTLMPNASSSEKVKQLLSGLVLMIKSLDLQIVAEGVETESDLNLCVKLGIGKIQG 549

Query: 938 SHVASPLGFNSILK 951
            +   PL    + +
Sbjct: 550 FYFDKPLSPFDLER 563


>gi|126641994|ref|YP_001084978.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter
           baumannii ATCC 17978]
          Length = 642

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 58  FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 117

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 118 EKKFGMR-WLDLLPPHIRKRGRVALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 174

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 175 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 233

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 234 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 293

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 294 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 353

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 354 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 412

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 413 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFEPLPVSLN 471

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 472 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 531

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 532 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 591

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 592 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 630


>gi|254775582|ref|ZP_05217098.1| GGDEF domain-containing protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 621

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 210/448 (46%), Gaps = 9/448 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +  + E I   A  D LTG+ NR++ +  L   L            V+ +
Sbjct: 156 IAALFAQLQARVVAEEQIHYLAEHDELTGLLNRRALIAHLDKRLAPGQPGPVP---VVFL 212

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            ID++K IN  LG   GD  + +    + E  + P ++AR  G+ FG++  +  +     
Sbjct: 213 AIDRFKVINGRLGQDAGDRFIDAFAALLREATEIPSVIARFGGDEFGVVPAAPMDVEAAE 272

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA ++ + +  PI + +  ++ T SIG A+      ++S++L+  + A   AK  GGN+
Sbjct: 273 SFAHSLHERLHHPIAIDDEMLSRTVSIGVAAGIPGDESTSDLLRRVDQATRSAKAAGGNN 332

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVE--NSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V +FR      D +   I+  L   ++  +  L L Y P   +   EI+G+EAL +W HP
Sbjct: 333 VATFRPEMSTIDTIRNDIELYLEGMIDGGSGALVLHYLPEFDMRTGEILGIEALTRWQHP 392

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +    F+ +AE + +   +   ++         WR +       + IN++   L+ 
Sbjct: 393 TLGLLMPDSFIQVAESINLGAKLGRLVMRSACAQFGQWRSRGVGQGTVLRINVSPVQLVT 452

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             + + + A + +    PS + L  +ESVV+ + + +R  L  L+ IG+ + +DDFGT  
Sbjct: 453 AGIVDTVAATLDEFGLDPSTVCLEITESVVVQDIDATRQTLFGLKDIGVQIAIDDFGTGY 512

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S+L+YL  +P D++K +   +    +    +AI+RS + +A      ++A+ +      +
Sbjct: 513 SVLTYLKSLPVDSLKIDKGFVQSLDTNPGDLAIVRSTLALADAFGLDVVAEGVETVAAAE 572

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L  +GC   Q   ++ PL    +  LL
Sbjct: 573 TLLSLGCHRAQGFLLSRPLDSAGMEALL 600


>gi|37676764|ref|NP_937160.1| signal transduction protein [Vibrio vulnificus YJ016]
 gi|37201307|dbj|BAC97130.1| predicted signal transduction protein [Vibrio vulnificus YJ016]
          Length = 833

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/472 (25%), Positives = 224/472 (47%), Gaps = 14/472 (2%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           AD  +    I      +  G + R           ++  + I   A+ D LT +PNR+ F
Sbjct: 356 ADGNY-TATIEGTQRPDEIGQLTRGFDQMR--GRLQEQKQTITQLAYFDTLTHLPNREHF 412

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-P 606
              L   L   +       +V+ I++D++K INDVLG  VGD VL  + +R+    +  P
Sbjct: 413 RQHLKQELAHPSL---KSISVITINLDRFKHINDVLGYHVGDAVLQEMAQRLTLTSESLP 469

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
              AR+SG+ F   +     S ++AD    +++ + +P  + +  I ++ SIG A+W S 
Sbjct: 470 LFAARISGDEFVGEIK--TGSDELADSVTRIKQRLDIPFYVNDTPIDISVSIGVATWPSD 527

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-RVMIKEDLCLAVENSELYLVYH 725
                 +L  +++AMY AK +    V             + +  +L  A+  +EL +   
Sbjct: 528 GGDVDSLLNASQIAMYSAKRKKEQVVFYDSALVTAIPENLSLLSELRRALLQNELRVFLQ 587

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +    + +   EALI+W HP+ G ++   F+  AE+   ++ +  +M++++ +     
Sbjct: 588 PKVMATTKVVSSAEALIRWQHPERGLLAPFFFVPFAEQTGYVRELTRWMIQQVIQHWREL 647

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           +  +    + I +N+++ DL++ +L + +Q  +S+     S + L  +ES +M +PE S 
Sbjct: 648 QPLSGQ--LTISVNLSTWDLINPQLLDDLQHWLSEYHVPASGLCLEITESAIMEDPETSE 705

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
           L L +L ++G  L++DDFGT  S L YL  +P + +K + S +           I+ S I
Sbjct: 706 LTLLQLSQMGFHLSIDDFGTGYSSLGYLQRLPVNELKVDKSFVLNMLENPNDKVIVSSTI 765

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A ++   ++A+ +        L  +GCD IQ   V+ P+     +   +E
Sbjct: 766 QLAHSLGLQVVAEGVESYALFTSLRELGCDEIQGYCVSKPIALEEFIAWREE 817


>gi|170744246|ref|YP_001772901.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium sp. 4-46]
 gi|168198520|gb|ACA20467.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Methylobacterium sp. 4-46]
          Length = 740

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/576 (19%), Positives = 232/576 (40%), Gaps = 25/576 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + + ++      +    D E    A   +   +   D              + G   G +
Sbjct: 164 LARLMMTQLDLRRQGRRDAEITRFA-AATELALLSVDPDGRIGFANQASERLFGYGPGDL 222

Query: 446 HGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRP 501
            G     +  I     R   R  +   +G    RL     +F     D     + + +  
Sbjct: 223 VGLP---VEVIVPQRARARHREGMARVLGEGGTRLAGRTVQFTGLRRDGSEVAVELTLSV 279

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            + + G  +  +    D+ E       +L  A +D +TG+PNR+   + L   L      
Sbjct: 280 WTGAEGMCMGAV--IRDVAE---GDGRLLNLADRDPVTGLPNRRHLTEILAARLVA---- 330

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                  +++ ++  K+ ++ LG  +GD +  + T R+   L      AR  G+R  +++
Sbjct: 331 --GPVAALLLHLEGLKEASEELGHGLGDALAQAATIRLLAALDGDATAARWDGDRMAVLV 388

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   +   A  ++ + A    +  R + +  S+G A        + E+L NA+LA+
Sbjct: 389 PD-PEPAGLLARAATLQDAFAGAFEVSGRTVHLGLSLGIAVAPRHGERAEELLANADLAL 447

Query: 682 YHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             A+H  G  V  +  +       R  ++ DL  A+E  EL L Y P + L    IVG E
Sbjct: 448 SRARHGDGRGVRVYDPAMRAEIESRRALQNDLRRALERGELVLHYQPQVLLRSGGIVGAE 507

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +   +F+   E   +   +  + ++ + R I +WR     PP+ I +N
Sbjct: 508 ALVRWQHPERGLLYPGDFLHAVESSTLALHLGWWTVDEVCRQIAAWRAAGL-PPVRIALN 566

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + +       L + ++  +++    P+ ++L  +E++ + N       +  LR+ G+ + 
Sbjct: 567 LYAAQFRAGTLGQVVEEALARHGVPPTLLELEVTETIALQNDGADLEPIRALRERGVGIA 626

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            DDFGT  + LS L   P   +K +   +          AI+ +++ + + +   ++A+ 
Sbjct: 627 FDDFGTGYAALSTLKRFPLSKLKIDRGFVRDILSEPHDEAIVGAVLSIGRRLALDVVAEG 686

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I     +  L R+GC++ Q       +   +  + L
Sbjct: 687 IETRDHVAALLRLGCEFGQGYLFGRAMPPAAFAERL 722


>gi|258626593|ref|ZP_05721423.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
 gi|258581097|gb|EEW06016.1| sensory box/GGDEF family protein [Vibrio mimicus VM603]
          Length = 750

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/563 (18%), Positives = 211/563 (37%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G         
Sbjct: 190 EDKLFQREAGLRHYYDQQPVMMLTLDERNHIQQINQFAEQLLGYPADAMLGHHIRDF--- 246

Query: 457 HINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           + +D     R +L           + E   R    +  W+   IRP+     +    + +
Sbjct: 247 YQDDEALTPRQMLLLPSRNASSVWRREVCYRHHSGEAVWVRENIRPLV----ETGTLLIV 302

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+
Sbjct: 303 GEDISETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQ 361

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K +ND  G   GD  +      + E+L F   LAR+ G+ F ++L              
Sbjct: 362 LKVLNDTAGHDAGDGAIQFCASMLEEVLPFKATLARMGGDEFSVLLRDCTERDAELVAQN 421

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +     +P         +T SIG      +  +   +   A+ A + AK  G N    +
Sbjct: 422 IIHALSEVPFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLY 481

Query: 696 RVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWG 750
           R       R  ++ +    +  A+ N  + L    I+ L   ++ +  E L++  +    
Sbjct: 482 RQDDADLRRRQLEMECVNLVHDALANERIELFAQRIVPLNQPDLQLHFEVLVRIKNAAGE 541

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+  +E   +   ++  ++E+    +   R +       + IN++   + + + 
Sbjct: 542 YVSPGIFVPASERYNLAHRLDRQIVEQTLSWL-EVRPEVVDKLGRVSINLSGNSIGNPDF 600

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S  
Sbjct: 601 VAFLLDRLGNSHIPCSKVCFEITETAAMRNLNQAIAVLSQLKGLGCVLALDDFGSGLSSF 660

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL  +P D VK +G  +    +      ++RSI  + K +  T +A+ +  E  ++ L 
Sbjct: 661 GYLQKLPVDIVKIDGIFVCDMDQNEMDRLMVRSIHELTKQMGKTTVAEFVENEQILQALQ 720

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            +G DY Q    + P     ++ 
Sbjct: 721 LIGVDYAQGYLFSRPQPIADLVA 743


>gi|304436946|ref|ZP_07396909.1| possible signaling protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369897|gb|EFM23559.1| possible signaling protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 563

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/565 (20%), Positives = 228/565 (40%), Gaps = 32/565 (5%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI- 458
           +  +     L    + D  +  D   D    +P       L S ++     +    +H  
Sbjct: 13  LRQNKRIFDLMKNTTSDYAFMMDPAADVFLASPTFVRDYALPSETLT----HVADVLHPL 68

Query: 459 ---NDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
               DR  F  I  S +    GR +  +FR+  A     W+ ++ +   + +G    ++G
Sbjct: 69  ICVQDRRAFDAIFSSLMDVTEGRERQLDFRITNAKGDLTWLRLKGKIGLSEDGHPNLFVG 128

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             + +  +  +          D++TG+ NR  F + L   L  +A +      ++V+ ID
Sbjct: 129 TISQLARRNAA----------DSVTGLLNRYQFTEDLGEAL-RAARETGKGGGLLVMGID 177

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++ +N+     +GD +L  ++  I + +     L RL G+ FG+I   E +   + +F 
Sbjct: 178 NFRTVNEAFNHEIGDVILREISECILQNVPRRLSLYRLDGDEFGLIYP-EADEEMLREFF 236

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
           I +++  A P     R+  VT S G   +  +      + K A+ A+  AK  G N + +
Sbjct: 237 IRVQREFAHPQVYDGRQYLVTMSAGMVFYPQAARDPLVLHKYAQAALDTAKAGGKNRLNA 296

Query: 695 FRVSSFRSDRVMI---KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           F    +      +   ++ L           L + P +   D+ IVG E L++W + K  
Sbjct: 297 FSKEVYNRWLRSLTIQEQILEDVKAGCRNFELYFQPQVAGDDQHIVGAETLLRWKNEKGH 356

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            ++  EF+ I EE   I  +  ++ E+  R    WR +   P   + +N++ + + D   
Sbjct: 357 MVAPMEFIRILEETKTIVPVGRWIFEQALRVCKEWRKKI--PNFCMSVNMSYEQIKDLSF 414

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++  + +    P  + L  +ES ++ + +         R  GI + +DDFGT  S L
Sbjct: 415 LKFIEDCLHRHDMPPDAVVLELTESKIVSDLKFVNAQFDAFRLHGIKIAMDDFGTGYSSL 474

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L  +  D +K + + +           ++   + +  +I  T   + +  + +   L 
Sbjct: 475 SSLKNLNCDIIKIDRAFVMRILDNHFDQKLVEYTVELCHSIGKTTCIEGVESQDEYDCLV 534

Query: 929 RMGC--DYIQDSHVASPLGFNSILK 951
           ++ C  D IQ      P   +   +
Sbjct: 535 KI-CKTDTIQGYLFGRPEPQDVFEQ 558


>gi|255020738|ref|ZP_05292797.1| hypothetical protein ACA_0096 [Acidithiobacillus caldus ATCC 51756]
 gi|254969800|gb|EET27303.1| hypothetical protein ACA_0096 [Acidithiobacillus caldus ATCC 51756]
          Length = 885

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/522 (22%), Positives = 229/522 (43%), Gaps = 19/522 (3%)

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    I   D       + +          + FR          +           G  
Sbjct: 250 ESGRTIIFPADDPQAPEWIRALRDRVGEIGCFPFRAED-------LRGVGLIGVGEKGYF 302

Query: 510 LRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            R      D  +   K +  +   A +D LT +PNR  FLDRL    + +   + L   V
Sbjct: 303 QRVGSAYFDAFSHLGKMVLSLRNQALRDPLTTLPNRALFLDRLDIARNQALRHERL-LGV 361

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            ++D+D +K++ND LG   GD +L +L +R+   L+  D LAR+ G+ FG++L       
Sbjct: 362 ALLDLDGFKQVNDRLGHGAGDQLLQALVQRLQAQLRAGDTLARMGGDEFGLLLPGLERVD 421

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +      +  +I  PI +    + ++ S+G   +      +  ++++A++A+Y AK  G
Sbjct: 422 DLEVVCERLLAAIREPIKIQGEAVHISGSLGVTLFPLDDGDADTLIRHADMALYAAKEAG 481

Query: 689 GNHVESFRVSSFRSDRVMIKEDL--CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +  +   ++   S +    + +    A+    L L Y PI+  +   +  +EAL++  H
Sbjct: 482 RDRCKLHTLAMDESVQAEAGKRILVEQALREDRLVLHYQPIVASVAGVVG-VEALLRLRH 540

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G ++ + F    +   + + I  F+L+   R    W+ +     + I +NI+++ LL
Sbjct: 541 PEKGLLTPAAFFSSLDNPLLARPIGRFVLDSALRQAAIWQREG--LALRIAVNISARHLL 598

Query: 807 DNELCEGMQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           D    E +Q  ++      P ++++  +ES  + +   ++ LL   + +G+ + LDDFGT
Sbjct: 599 DARFLEDLQEALANHASVPPEQLEIEITESAPLLDLAETQKLLNACQALGVRVALDDFGT 658

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L+YL  +P  ++K +   +       K +AI+ ++I  ++ +    IA+ +     
Sbjct: 659 GNASLTYLQQLPAHSIKIDQGFVRDMLDDPKDLAIVAAVITASRMLGLETIAEGVERAEL 718

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK--ERFPLVKNT 963
              L +MGC ++Q    A PL   +I   +      PL ++ 
Sbjct: 719 AALLAKMGCSHLQGYLFAKPLPAEAIPAWVAGFRAIPLSRDA 760


>gi|325273682|ref|ZP_08139890.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324101186|gb|EGB98824.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 539

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/435 (25%), Positives = 211/435 (48%), Gaps = 9/435 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   LT  L     ++     +  +D+D ++ 
Sbjct: 110 VRERGVLVATLQRLAEQDPLTGIANRQGFQALLTARLA---ENEGRGVALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D LARL  + F +++ +  +  +    A  + 
Sbjct: 167 VNDALGHQSGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDPNRAEWIAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWIDGESLLLGCSLGLAHARAQG-GADPLMWHAHIAMRQAKGSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H   G +   E
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHSDRGLLPPCE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  ++    P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALCERGL-EPLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LILEHGVDARWLEFELTETAVMRRNELVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+   ++ ++I +A N+   ++A+ +  E  ++ L   GCD 
Sbjct: 465 PITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLELLRGFGCDQ 524

Query: 935 IQDSHVASPLGFNSI 949
           +Q   V+ PL    +
Sbjct: 525 VQGFLVSKPLPVGEL 539


>gi|313501238|gb|ADR62604.1| Diguanylate cyclase/phosphodiesterase [Pseudomonas putida BIRD-1]
          Length = 555

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 215/441 (48%), Gaps = 9/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   L   L     ++     +  +D+D ++ 
Sbjct: 110 VRERGVLVATLQRLAEQDPLTGIANRQGFQALLNARLA---ENEGRGVALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D LARL  + F +++ +  ++ +    A  + 
Sbjct: 167 VNDALGHQSGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWIDGESLLLGCSLGLAHARAQ-SGADPLMWHAHIAMRQAKGSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  ++    P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALCERGL-EPLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LILEHGVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+   ++ ++I +A N+   ++A+ +  E  +  L   GCD 
Sbjct: 465 PITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLALLRGFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   V+ PL    ++  L +
Sbjct: 525 VQGFLVSKPLPIGELMAYLLQ 545


>gi|323491305|ref|ZP_08096490.1| hypothetical protein VIBR0546_12767 [Vibrio brasiliensis LMG 20546]
 gi|323314431|gb|EGA67510.1| hypothetical protein VIBR0546_12767 [Vibrio brasiliensis LMG 20546]
          Length = 596

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/438 (23%), Positives = 206/438 (47%), Gaps = 10/438 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++        +  D LT +PN  ++ D LT I       +     ++ I ++ +K +ND 
Sbjct: 153 RQQAIAFKTESQTDYLTKLPNINAYRDDLTRI----DESNAKNFGLIHIGLEGFKNVNDR 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD++LV+  + + +L+     + R  G+ F +++ S++    + +    + +   
Sbjct: 209 LGYRHGDELLVAFAKHLKDLVDEDGKVYRFGGDEFLVVVESKDILETLNELVDKLGRHQR 268

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
           +  ++      +   IG A    +  +     KNA+ A+Y A+  G   V  F       
Sbjct: 269 VMFSVDNTSHRLAYCIGVAMAGDALGSIEVWEKNADFALYKARSEGAGSVCWFDDELLGE 328

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ ++  A+ + +  L+Y P + +    IVG EAL++W+HP+ G IS  EF+ I
Sbjct: 329 TIRQHQIETEIKSALMSDQFMLMYQPKVEIETGRIVGAEALLRWNHPQLGPISPGEFIPI 388

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  +  +++    R    + DQ    PI I +N+++      +L E +   + +
Sbjct: 389 AEKTTQIVPVGHWIIHEACRQAKQYNDQG--IPICIAVNVSTVQFAHADLFEVVCHALKE 446

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T      +++  +ES +M +PE    +  +LR IG+S+ +DDFG + S L YL  +P D 
Sbjct: 447 TQLPSHLLQMEITESTLMSDPENITDICRQLRAIGVSIAIDDFGVEYSSLKYLKQLPTDV 506

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +     +     ++R+II M  ++   ++A+ +  +  +  L + GCD  Q  
Sbjct: 507 IKIDKCFVDDCPVSHSDRVLVRTIIQMGHSLGIKLVAEGVEYQEQLDVLQQEGCDQYQGY 566

Query: 939 HVASPLGFNSILKLLKER 956
             + PL F     ++K+ 
Sbjct: 567 LFSQPLSFAEFGSMMKQE 584


>gi|241766489|ref|ZP_04764357.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax delafieldii 2AN]
 gi|241363299|gb|EER58840.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
            sensor(s) [Acidovorax delafieldii 2AN]
          Length = 1104

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/442 (25%), Positives = 211/442 (47%), Gaps = 11/442 (2%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            Q+++ E +   A  D LTG+PN   F   + + +  +          + ++I++  +IND
Sbjct: 665  QQRTQEAMDRLAHYDTLTGLPNELLFTQWMASAIAGAK-----PFAALQVNIERLSEIND 719

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             LG + GD VL     R+         +ARL G+ F ++L    ++         + +S+
Sbjct: 720  ALGFSQGDQVLREFGARLRAAAPASASVARLRGDEFALLLPG-GDAATAIAVVQQLGRSL 778

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSF 700
            A P+ L +  + ++A  G A + +   T  ++ ++ ++AM+ AK RG    V        
Sbjct: 779  AQPLALADIFLDISARTGIALFPAHGSTPHDLYRHMDIAMHQAKMRGLDYFVFDPARDPD 838

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            RS R+ +  +L  A+E+ +L L   P + +    + G E L++W H + G I   EF+ +
Sbjct: 839  RSHRLNLAGELRAAIEHGDLDLHLQPKVDMATGAVCGAEGLVRWHHAERGLILPGEFIGL 898

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AE   +IK +  +++    +    W  +     + I +N+++++L D  L + ++ L   
Sbjct: 899  AEHTGLIKPLTEWVIATSLQLNQQWMREGR--ALPIAVNLSARNLRDENLIDIIRQLQRA 956

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            +  +   ++L  +ES VM +   +  +L  LR  GI L +DDFGT  S LSYL  +P D 
Sbjct: 957  SGVTAGLLELEITESTVMEDAAFALRVLHGLRDEGIPLYIDDFGTGYSSLSYLLKLPVDY 1016

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S +     T+    I+ S I +A ++   ++A+ +       +L   GCD+ Q  
Sbjct: 1017 IKIDQSFVRDMPDTKDAALIVHSTIDLAHDLGRKVVAEGVETRQHWDQLAAFGCDHAQGY 1076

Query: 939  HVASPLGFNSILKLLKERFPLV 960
             +A P+  + +   L    P +
Sbjct: 1077 FLARPMPAHELPGWLAGFQPPL 1098



 Score = 66.9 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 2/137 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + V A     Q +    E  S  +   GD V   D         P    + G    
Sbjct: 193 VLIRRQVRAAQASQQALAESEEHLSTTLHSIGDAVLATDTQGRITRMNPVAERLTGWLLD 252

Query: 444 SMHGPI-RNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              G         ++   R      +   +       L     + A D     +     P
Sbjct: 253 EALGRPIDQVFCIVNEETRAPAMVPVARVLETGEVQELANHTALIARDGSECPIADSAAP 312

Query: 502 MSNSNGDILRYIGIAND 518
           + ++ G +   + +  D
Sbjct: 313 IRDTEGHVRGVVLVFRD 329



 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 33/141 (23%), Gaps = 8/141 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +    +  +          +     ++   D  +  V            A          
Sbjct: 350 SVRERTAQLQESEGHLRNVISNVPAMIAYVDAHQRYVYANRQYQQRF--APDQPDITGLE 407

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
               +          I+   +             +       W  I   P  ++   +  
Sbjct: 408 VREVLGPERYATAGPIIARALQGEAQNYD----WQPFPG--VWHAISYLPRRDAQDSVAG 461

Query: 512 YIGIANDITEQKKSLEGILCN 532
           Y  +  DIT++K++ E I   
Sbjct: 462 YYVLGTDITDRKQTEEQIQAL 482


>gi|89055710|ref|YP_511161.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88865259|gb|ABD56136.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 554

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 110/521 (21%), Positives = 229/521 (43%), Gaps = 48/521 (9%)

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI----------------- 519
                + R+     +  W+ +   P+++       ++    ++                 
Sbjct: 17  EHFSVKVRLTKKTGEPVWVTMTWTPLTDPENGNRWWLCSLIELQPHPAQSKNVLDFRNQS 76

Query: 520 ---------TEQKKSLEGILC-----------NAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                    TEQ   LE               ++ +D LTG+ NR+ F   ++  +  + 
Sbjct: 77  SANDLVTQYTEQVAHLESENRRLRSIAKAVTRDSNEDPLTGLSNRRHFEANVSVWIA-AL 135

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +      ++ ID+D++K IND LG   GD +LV++   +  +    D++ARL G+ F I
Sbjct: 136 RNRGAAFAILFIDLDRFKTINDTLGHEAGDGLLVAVASMLKRITHSSDLVARLGGDEFVI 195

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +     ++L+I+  A  + + ++ P     + ++  AS+G A          E++ +A+ 
Sbjct: 196 LRPLGESALEISGLADEIIREMSKPFEFDGKSVSCGASVGVAIADKDARNPEEVVGDADT 255

Query: 680 AMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+YHAK  G      F             +  +L  A E  E    + P++      I G
Sbjct: 256 ALYHAKSTGRARWSFFTAEMRAQSVATRHLATELLAACERKEFVPYFQPLVDASTGRITG 315

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +E L++W HP  G +  ++F+ +A ++ ++  I+  +  R  R+ +++ D A++      
Sbjct: 316 VEVLVRWSHPTRGLVPPTDFLDVAAQMGILAEIDTILFSR-LREAVAYLDTAHIEVPRFA 374

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL-LLGRLRKIGI 856
           IN+++  L D+ L   +    + +   P R+ +   ESV +     +    L  LR++G+
Sbjct: 375 INVSAGRLSDSALLHDI----NVSGIDPKRLTVEILESVYLERIHDATSWTLEELRELGV 430

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTII 914
            + +DDFGT  + +  L  I  D +K +   +     +E+  A+++S+I + K++   ++
Sbjct: 431 EVAVDDFGTGHASVQGLLQIKPDVLKIDRQFVQPAAESERARALVKSLIGIGKSLGLKVV 490

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +  E   +    +GCD +Q  +   P+    + K+L E
Sbjct: 491 AEGVENEAQAQLARDLGCDILQGFYFGKPMAEPDLFKVLNE 531


>gi|172056542|ref|YP_001813002.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171989063|gb|ACB59985.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 685

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/546 (21%), Positives = 244/546 (44%), Gaps = 13/546 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A       V  +D          ++  I G     + G    W   +  +  ++   
Sbjct: 135 LRYAFDQIA-CVAIFDARGTIQYANTNLTDITGFCPHLLLGQP--WTILL--DSSEDVLP 189

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++ S +  ++     +  +   D         + P+ + NG   +++ I  DITE +   
Sbjct: 190 MIRSQIKKKKA-WSGKLSISTQDESKKVFHATLIPVYDVNGVRFQHLFIGTDITETEHLE 248

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +      + LT + NR+ FL      +  S   D+L  ++++ DID++K IND  G  
Sbjct: 249 QELDFLVHHNELTHLLNRRGFLR--EGQVLFSKASDDLPISLILFDIDRFKVINDSFGTH 306

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD +L +L +R+ E      +    + + FG++L    +   +  +A  +++ +  P  
Sbjct: 307 VGDQLLQALAKRLSEHA-KQLLTFHPTSDLFGVVLE-VTDRNALFQYARKLQQVLQRPYY 364

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES--FRVSSFRSDR 704
           +    + ++ + G   + S   +  ++ + +E+A+Y  K  G   ++     +    + +
Sbjct: 365 INGHSLIISCTFGITVYPSEAKSLEDLYRRSEMALYAGKSIGTGTIQYLTHEMDEQFTRK 424

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  L  A+E+  L+LVY PII L  + + G EAL++W+H   G+I   EF+ +AEE 
Sbjct: 425 LQLERSLFTALEDQALHLVYQPIINLKTKHVDGFEALLRWNHTALGSIPPDEFIPLAEEA 484

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  IN +++      +  W+ Q   P + + INI+      +     +Q ++S+    
Sbjct: 485 ALITPINNWVVIEACERLALWQKQIA-PDLTMAINISPHQFQSDSFVRTLQHVVSQKKID 543

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + L  +E++ +   +R+   +  ++ +G  L++DDFGT  S L YL   P D +K +
Sbjct: 544 PRFVTLELTENIAILQTQRTIERMQLIQALGFRLSIDDFGTGYSSLQYLRAFPIDELKID 603

Query: 885 GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
              + G       +L SII + +N++  ++A+ +     +  L    C  +Q    + PL
Sbjct: 604 KVFIDGIDLGENGLLDSIIQLGQNLKLNLVAEGVETTTALSYLEATACQQMQGFIFSEPL 663

Query: 945 GFNSIL 950
               + 
Sbjct: 664 SVEEVE 669


>gi|319788275|ref|YP_004147750.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Pseudoxanthomonas suwonensis 11-1]
 gi|317466787|gb|ADV28519.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase
           sensor(s) [Pseudoxanthomonas suwonensis 11-1]
          Length = 887

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/619 (22%), Positives = 235/619 (37%), Gaps = 23/619 (3%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
           ER ++       + +W      + T  L   +    +   L L++  +  T  + V    
Sbjct: 268 ERRIMFGGRQWHLSMWPRAGKTSYTSVLMVGLTGTVISLLLALLLWTLANTRRRAVEMGL 327

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWL 453
              +       R          +V   D     +          LG+A G     +    
Sbjct: 328 RMGERFGESEARFRALNELLPALVLLADARDGTIAYANQAARRQLGVAGGEPLPSLFA-- 385

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                 D    R  L+            E  +     +  W    +  +   +G     +
Sbjct: 386 ------DPAQGRDALEIARAG-GDWSGREALIVPGAGEPFWAHASLARV-EVDGIP-HLL 436

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +AND++EQ+K  E +   A  D LTG+ NR+ F  RL   L     D +    V+ ID+
Sbjct: 437 MVANDVSEQRKLTERLGYQAAHDELTGLYNRREFERRLQKALATLEKDPSASFAVLYIDL 496

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND+ G   GD +LV L   + E L+  D+LARL G+ FG +L     + +    
Sbjct: 497 DQFKLVNDLSGHMAGDQLLVELVHAMREQLRPQDLLARLGGDEFG-LLAPATGAAQARAL 555

Query: 634 AIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           A  MR  I         R  TV+ASIG      +  T  ++L  A+ A Y AK  G N V
Sbjct: 556 AERMRDCIENVVFPWEGRTYTVSASIGVVVAGETGATLKDILAWADSACYQAKENGRNRV 615

Query: 693 ESFRVS---SFRSDRVMIKEDLCLAVENSELYLVYH---PIIRLMDEEIVGLEALIQWDH 746
             +R     + R   +     L  A+E   L L Y    P+     +    LE L++   
Sbjct: 616 HIYREDVDTTRRQGEMEWATRLRRALEEDRLLLDYQEVVPLAPEPGDHAPRLELLLRLRD 675

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                +    F+  AE   ++  I+ +++     +      +      F  IN++   + 
Sbjct: 676 EDGNVVMPGAFLPAAERYGLMPVIDRWVIRTALANANRLHPRGAELRTF-AINLSGASIE 734

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D  L + +   I++    P R+ L  +E+V + N  R   ++ RLR  G  + LDDFG  
Sbjct: 735 DQGLADYILGCIAEYRVEPRRVCLEITETVAVRNLRRVVPVIERLRAAGCRIALDDFGAG 794

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S   YL  +P D +K +G+ +           I+ +I  +       ++A+ +     +
Sbjct: 795 MSSFGYLKNLPVDIIKIDGAFIRDLETDPVSRIIVSAIAQIGHQRGLRVVAEWVDDPRML 854

Query: 925 KELTRMGCDYIQDSHVASP 943
             L   G D  Q   +  P
Sbjct: 855 PLLRERGVDLAQGFALHRP 873


>gi|188995965|ref|YP_001930216.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931032|gb|ACD65662.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 952

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/568 (19%), Positives = 237/568 (41%), Gaps = 34/568 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
              AV  S   +   D           +  + G     + G   R +   I   D + ++
Sbjct: 398 LRKAVDNSKMWLLITDSNGTIEYVNQYVIDLTGYTKEEIIGKNPRIFKSGI--QDIEFYK 455

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + ++ +  +       F  +  D +  ++   I P+   N   L+++ I  DIT++K  
Sbjct: 456 ELWNTILSGK--PFSAVFVNKTKDGRLIYIDQTIYPIKLKN-KTLKFVSIGRDITQEKLL 512

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E I    + D+LT +PN  SF  + + I+     +   +  +++IDI     +N     
Sbjct: 513 SEEIEKYKYYDSLTELPNFISFKIQFSEIIKNKIYE---KFGLILIDIYNMSVVNASYEF 569

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             G+++L  + + + +        AR+  + F I++ +  N          +R ++   +
Sbjct: 570 ETGNEILKEVAKNLKKEF-PDGYAARIGSDEFAILIPNIENES---ILIYKIRDALDKDL 625

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSD 703
           N  + +I ++ +     +     T  E+  NA L +  AK  G N ++ +  +++    +
Sbjct: 626 NTSKGKIHISYNASIVLYNEDGQTFEELYNNAVLTLNTAKKEGENVIKFYESQLNKKLEE 685

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  ++ +  A +       + P  +  D  + G E+L++            +F+   E 
Sbjct: 686 YLTAEKIVEKAFKKKLFKFYFQPYFKSEDFSVAGFESLVRIVDEDGTVYPPIKFIDYLEN 745

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK------------DLLDNELC 811
              I     + LE +++ I  +    +     I +N++ K            +L D    
Sbjct: 746 SKYITKFEEWALEEVSQKIKKFNSLNDKKDRTISLNLSPKGLLGYSLNLTSDELSDKNFV 805

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG--ISLTLDDFGTKCSL 869
           E +++L  +T    + + +  +E  V+ + E+S+ +   ++ +   I + +DDFGT  S 
Sbjct: 806 ERLKSLPIETQ---NNLVIEITERNVIKDIEKSKKIFKDIKDLNKNIKIAIDDFGTGYSS 862

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +  D +K + S +      R   ++++ II +AK+     IA+ +  E  +K L
Sbjct: 863 LTYLRDLTIDILKIDMSFVRNIARSRQDLSLVKFIIGLAKDFGLKTIAEGVETEGQVKFL 922

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +G DY+Q  + A P+     +KL+ E
Sbjct: 923 SLLGADYLQGFYFAKPMPEEEAVKLIME 950


>gi|118465484|ref|YP_882316.1| GGDEF domain-containing protein [Mycobacterium avium 104]
 gi|118166771|gb|ABK67668.1| GGDEF domain protein [Mycobacterium avium 104]
          Length = 621

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/448 (25%), Positives = 209/448 (46%), Gaps = 9/448 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
              +   +  +  + E I   A  D LTG+ NR++ +  L   L            V+ +
Sbjct: 156 IAALFAQLQARVVAEEQIHYLAEHDELTGLLNRRALIAHLDKRLAPGQPGPVP---VVFL 212

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            ID++K IN  LG   GD  + +    + E  + P ++AR  G+ FG++  +  +     
Sbjct: 213 AIDRFKVINGRLGQDAGDRFIDAFAALLREATEIPSVIARFGGDEFGVVPAAPMDVEAAE 272

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA ++ + +  PI + +  ++ T SIG A+      ++S++L+  + A   AK  GGN+
Sbjct: 273 SFAHSLHERLHHPIAIDDEMLSRTVSIGVAAGIPGDESTSDLLRRVDQATRSAKAAGGNN 332

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVE--NSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V +FR      D +   I+  L   ++  +  L L Y P   +   EI+G EAL +W HP
Sbjct: 333 VATFRPEMSTIDTIRNDIELYLEGMIDGGSGALVLHYLPEFDMRTGEILGTEALTRWQHP 392

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +    F+ +AE + +   +   ++         WR +       + IN++   L+ 
Sbjct: 393 TLGLLMPDSFIQVAESINLGAKLGRLVMRSACAQFGQWRSRGVGQGTVLRINVSPVQLVT 452

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             + + + A + +    PS + L  +ESVV+ + + +R  L  L+ IG+ + +DDFGT  
Sbjct: 453 AGIVDTVAATLDEFGLDPSTVCLEITESVVVQDIDATRQTLFGLKDIGVQIAIDDFGTGY 512

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S+L+YL  +P D++K +   +    +    +AI+RS + +A      ++A+ +      +
Sbjct: 513 SVLTYLKSLPVDSLKIDKGFVQSLDTNPGDLAIVRSTLALADAFGLDVVAEGVETVAAAE 572

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL 953
            L  +GC   Q   ++ PL    +  LL
Sbjct: 573 TLLSLGCHRAQGFLLSRPLDSAGMEALL 600


>gi|134293282|ref|YP_001117018.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
 gi|134136439|gb|ABO57553.1| diguanylate cyclase/phosphodiesterase [Burkholderia vietnamiensis
           G4]
          Length = 799

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 128/594 (21%), Positives = 230/594 (38%), Gaps = 28/594 (4%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRD 426
           L+   V+  +LI    ++           + ++ +R       A+    D +    + R 
Sbjct: 214 LLLSYVVASLLIILLSVRWASRAQRQQSSMQTELDRSLAFADAALRSVVDAIVTIGLTRS 273

Query: 427 RVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR--TILDSFVGYRRGRLQYEF 483
             T  P    +LG  +    G PI + L  I   D        +L +           + 
Sbjct: 274 IETVNPAAEQLLGRTAQRCVGEPINDVLDLI---DTSTGMSIKLLATLCNGGDHTFTRDL 330

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            +         +   +  M+N+ G  + ++    D+T + + +E +   A  D LTG+ N
Sbjct: 331 NLIRVCGTAVPVRASLSRMTNAVGRCVGHVLTLRDMTREHQLIERLTWQASHDALTGLIN 390

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F  RL  +L      D     +MV+D+D +K++NDV G A GD +L   T      L
Sbjct: 391 RTGFERRLGEMLA-----DGAGGALMVLDLDGFKEVNDVCGHAAGDVLLRDATAVFSGCL 445

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFAS 662
              D+  RL G+ FGI+L +  N       A  MR  +             ++ SIG   
Sbjct: 446 DEGDVFGRLGGDEFGILLPACRNVAPDDGKAERMRAQLEAFTFTWDGEPFKISVSIGLLD 505

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENS 718
                 +  + ++ A+LA Y AK  G N V             +        +  A+E +
Sbjct: 506 LACRPASIEKAMQMADLACYVAKDGGRNRVHVAHPRDLHAGRPAYHTQWSRRVKTALETN 565

Query: 719 ELYLVYHPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
              L   PI+ +   D     +E L++        I    F+  AE    +  I+ +++ 
Sbjct: 566 AFQLHAQPIVPIQSGDGAPQRVEILLRVPDADGKLIPP-VFLPAAERYGHMTMIDRWVVS 624

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            +   I           +   +N++++ + D    E + A +S +   PS +    +E+ 
Sbjct: 625 NV---IRRLARLERREYVEYNVNLSARSITDERFVEFVMAELSASGLEPSLLCFEITETS 681

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
            + N E +   +  LR +G    LDDFG   S  SYL  +P D +K +G L+   T    
Sbjct: 682 AVRNLEVASRFMCELRDLGCRFALDDFGAGMSSFSYLHQLPIDYLKIDGGLVATMTSDHV 741

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  I  +I  +A  ++   +A+ +      + L  +G DY Q  +   P+ +  
Sbjct: 742 KRGIACAINDIAHVMQYRTVAEHVEDPETAEMLRTLGVDYCQGYYFGRPVPWQE 795


>gi|15964571|ref|NP_384924.1| hypothetical protein SMc00887 [Sinorhizobium meliloti 1021]
 gi|307309317|ref|ZP_07588980.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|307320053|ref|ZP_07599474.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|15073749|emb|CAC45390.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306894268|gb|EFN25033.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306900186|gb|EFN30804.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 448

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 213/448 (47%), Gaps = 15/448 (3%)

Query: 519 ITEQKKSLEGILCNAFQ-----DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           +T Q+  ++    ++       D LT + N +   + +   L      D    T+ + ++
Sbjct: 1   MTLQELGIDRPKRDSTHGAPFVDPLTELGNARHLKETV-CTLAAERASDPAPFTIGLANL 59

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K IND+ G   GD +L  +  R+   +     + R + + F I+L            
Sbjct: 60  DGFKPINDLFGPEAGDQILRQVAHRLKACVPEGATVTRTADDEFAIVLPLVFERRSAEKR 119

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +++ ++ P  L +R + ++AS GFA +  +  T  ++LK+A+ A+Y +K RG   + 
Sbjct: 120 GQMLKEVLSSPFALGDRNVRLSASFGFAVYPFAGDTFDDLLKSADTALYRSKRRGRGQIT 179

Query: 694 SFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +     +  +    +++ L  A+    + + + PI+ L  +  VG EAL +W     G 
Sbjct: 180 VYSQEIAQEMKHATQLEQALRNAIIAGGIDVHFQPIVDLRSDRPVGFEALARWCDADLGY 239

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S + F+  AEE   I A++  +L + AR  +SW +      +F+  N++S  L+D    
Sbjct: 240 VSPAVFVPFAEERGFIDALSEMLLRKAARAALSWPE-----DLFLSFNLSSVQLMDPATS 294

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             + A+I++    P R++L  +E+  M +   ++ ++  LR  G+ ++LDDFGT  S L 
Sbjct: 295 ARLLAIIAQVGLDPRRLELEITETAAMADAGTAQRIVTELRAAGVRVSLDDFGTGQSSLG 354

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L     D VK + + ++G +  R    I+++I+ M + +E  ++A+ I    +  +L  
Sbjct: 355 RLRDFSLDKVKIDRTFVSGISTDRTSEHIVKAIVSMCEGLELAVVAEGIEHSSEALKLKA 414

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
           +GC   Q      P   ++ L+ L E +
Sbjct: 415 LGCGLGQGYFYGKPADADATLRYLSEHY 442


>gi|146280177|ref|YP_001170334.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
            17025]
 gi|145558418|gb|ABP73029.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhodobacter sphaeroides ATCC 17025]
          Length = 1477

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/578 (22%), Positives = 244/578 (42%), Gaps = 24/578 (4%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG----SMHG 447
                  + + +     +  +  S   +   D     V        +L L        +  
Sbjct: 869  DRKALERELEARNALIAGVLRTSVSAILATDTAGRVVYANAAAQHLLALTPAPDDPQVFR 928

Query: 448  PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNS 505
                 L  +  + +      L   +  R G  Q++ R  VR  +    ++ I   P+   
Sbjct: 929  VPDWPLETL--DGQPVGEAALPPALVRRSGEDQHDLRYAVRLPEGGRRFLSINAAPLP-P 985

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                   +    DIT+ +   + +   A +D LTG+ NR+           L+A      
Sbjct: 986  APHGAEIVMSVTDITDAEAVADRLRQLADEDPLTGLANRR--ALSAALEARLAAAAGPAP 1043

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              ++++DID +K +ND +    GD VL  +  R+       D+LARL G+ F ++L S  
Sbjct: 1044 LALIMLDIDNFKSVNDTMRHEAGDRVLCIVAERLRACAGREDLLARLGGDEF-MLLASGL 1102

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            +       A  +R +IA PI +  + I +TAS G A           ++  A++A++ AK
Sbjct: 1103 DREAAVVLAERLRDAIARPIRIDTQPIRLTASAGVALCPDQGTVMPLLMTGADIALHAAK 1162

Query: 686  HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALI 742
              G N         F ++     I   L        L LVY P    + +  + G+EAL+
Sbjct: 1163 RAGRNRTILLSRELFAAEERRSAITRAL-DGPALDRLRLVYQPQFSLVGNGGLAGVEALL 1221

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W  P  G++   EF+ +AEE+ +I  I+  ++ + AR +  W      P   + IN+++
Sbjct: 1222 RWTDPVLGDVCPDEFIPLAEEVGLIVTIDDRVIAQAARQLRHWAACGWYP--RLSINVSA 1279

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            + L   E  +    L++     P +I L  +E+ ++  P  +   +  LR+ GI L +DD
Sbjct: 1280 QSLSRREFAQDTLQLLAAERIDPRQITLELTETSLLA-PSSAEQNIASLRRSGIGLAIDD 1338

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTIIAKDI 918
            +GT  + LSYL  +    +K + S + G T +       ++R+II +A  +  +  A+ +
Sbjct: 1339 YGTGYASLSYLHRLRATEIKIDRSFIAGLTSENPRHSRTLIRAIIGLAGTLGMSTTAEGV 1398

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKE 955
              +   + L + GCD IQ   ++ PL  + +  + L+ 
Sbjct: 1399 ETDAQREWLRQAGCDRIQGHLLSLPLARDELEARFLEA 1436



 Score =  143 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/553 (13%), Positives = 166/553 (30%), Gaps = 80/553 (14%)

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLI---PTFAMAWVVLGYISIDFGFLSKLVNLPS 247
               +    + LA F+ +     R           A  + ++ ++      L+       
Sbjct: 12  LDSAVYATVATLAGFVLLVSWTLRQDHFFGRRHFLACLFGMIWWLGAASLELATPTLACK 71

Query: 248 GELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYITFSGIACIAILFCMS------ 300
                    +   +     +FL  Y         +   +  +G+  +A L   +      
Sbjct: 72  LAFASAAWPAITLVPICWCLFLAHYCFGLGARLRRTETLVVTGLVGLATLLVATNPWHGL 131

Query: 301 FYYPMVTAS--------------IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
           FY P                   +     + + ++ +          +     + PAW++
Sbjct: 132 FYLPGTRLGVLDGRPSAIFEHGPLFHALASLLYIFLSLAAAIAAAAAFRAPRAMRPAWMM 191

Query: 347 IFIWFIG---LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           +    +      +A                    ++++  + +        Y ++ +   
Sbjct: 192 MLFGTLVPLAANLAYVTLETTLFGFDPTPFAFAFVLLVFTWAI--------YANRSLDLT 243

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            + + L      D V   D     V   P    ++            ++ P    +D   
Sbjct: 244 SQARDLIFFNLTDPVLVLDAGGRIVGMNPAAQALM-----------PDFAPGQSPSDTGP 292

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG---DILRYIGIANDIT 520
               L   +  + G    E R +  +     + IR+  M    G    +L  + +  D+T
Sbjct: 293 L-ARLRPLLEEKEG----EGRWQRVEIGDRILEIRLMRMRKPLGGRQTLLGAVVLLTDVT 347

Query: 521 EQKKSLEG---------------------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +  ++                            A  D LTG+ NR++       ++  +A
Sbjct: 348 DLHRNAMRLELALGLARNQLAEITRLREISERLARSDPLTGLGNRRALD-----LVFEAA 402

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             ++    + ++DID +K+IND  G + GD VL      + E+L       R+ G  F I
Sbjct: 403 QPEHSSIGLALLDIDHFKQINDRFGHSAGDRVLRRFAEAVTEVLPEGTHAFRVGGEEFLI 462

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +    + +           +    P   ++    +T S G A       +  ++   A+ 
Sbjct: 463 LCPGFDMAAMAGLVGQVAHQVQQKPPLRVQDHSPLTFSAGIAVRPEDGSSLDQLYARADA 522

Query: 680 AMYHAKHRGGNHV 692
            +Y AK  G N  
Sbjct: 523 CLYEAKRSGRNRF 535



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 2/141 (1%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             +    ++    D  R +       ++V   D     +       T  G     + G  
Sbjct: 740 AASAQGIARAAERDLARLAHVAEVMTNLVIILDTELRILWVNRAFETQTGYRLADVAG-- 797

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           R++   +     D            RR   + E     A    +W+   I PM + +G  
Sbjct: 798 RDFASLVRGPQTDPAAVAAVQAAVERRESHEGETINHDARGHPYWIHFNIHPMFDRDGTY 857

Query: 510 LRYIGIANDITEQKKSLEGIL 530
           L Y+ +   I+++K     + 
Sbjct: 858 LGYVSVETVISDRKALERELE 878


>gi|258623103|ref|ZP_05718115.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
 gi|258584586|gb|EEW09323.1| sensory box/GGDEF family protein [Vibrio mimicus VM573]
          Length = 750

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/563 (18%), Positives = 211/563 (37%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G         
Sbjct: 190 EDKLFQREAGLRHYYDQQPVMMLTLDERNHIQQINQFAEQLLGYPADAMLGHHIRDF--- 246

Query: 457 HINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           + +D     R +L           + E   R    +  W+   IRP+     +    + +
Sbjct: 247 YQDDEALTPRQMLLLPSRNASSVWRREVCYRHHSGEAVWVRENIRPLV----ETGTLLIV 302

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+
Sbjct: 303 GEDISETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQ 361

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K +ND  G   GD  +      + E+L F   LAR+ G+ F ++L              
Sbjct: 362 LKVLNDTAGHDAGDGAIQFCASMLEEVLPFKATLARMGGDEFSVLLRDCTERDAELVAQN 421

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +     +P         +T SIG      +  +   +   A+ A + AK  G N    +
Sbjct: 422 IIHALSEVPFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLY 481

Query: 696 RVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWG 750
           R       R  ++ +    +  A+ N  + L    I+ L   ++ +  E L++  +    
Sbjct: 482 RQDDADLRRRQLEMECVNLVHDALANERIELFAQRIVPLNQPDLQLHFEVLVRIKNAAGE 541

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+  +E   +   ++  ++E+    +   R +       + IN++   + + + 
Sbjct: 542 YVSPGIFVPASERYNLAHRLDRQIVEQTLSWL-EVRPEVVDKLGRVSINLSGNSIGNPDF 600

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +    S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S  
Sbjct: 601 VAFLLDRLGNSHIPCSKVCFEITETAAMRNLNQAIAVLSQLKGLGCVLALDDFGSGLSSF 660

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL  +P D VK +G  +    +      ++RSI  + K +  T +A+ +  E  ++ L 
Sbjct: 661 GYLQKLPVDIVKIDGIFVCDMDQNEMDRLMVRSIHELTKQMGKTTVAEFVENEQILQALQ 720

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            +G DY Q    + P     ++ 
Sbjct: 721 LIGVDYAQGYLFSRPQPIADLVA 743


>gi|182417513|ref|ZP_02948840.1| diguanylate cyclase/phosphodiesterase [Clostridium butyricum 5521]
 gi|237665910|ref|ZP_04525898.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378682|gb|EDT76209.1| diguanylate cyclase/phosphodiesterase [Clostridium butyricum 5521]
 gi|237658857|gb|EEP56409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 762

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 201/433 (46%), Gaps = 11/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +   +  D +T + NR+S  +     +  +   DN   +   IDID +KKIND L
Sbjct: 334 QYSEKMKYISGHDTVTRLLNRRSLEE-----IGENLIRDNKEFSCAFIDIDNFKKINDFL 388

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL  +   I    K      R+ G+ F +I+  E N  KI D    M   +  
Sbjct: 389 GHNTGDEVLCIIADYILSYGKDKISCGRIGGDEFLVIIEGEGNKEKIIDMVKYMFDKLKD 448

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            I        V ASIG + +     T S++L+N+++AMY+ K+   N+   F       +
Sbjct: 449 NIYFRGTSYNVKASIGISYFPEHGETFSQILQNSDIAMYNVKNNERNNYCIF--QRELFN 506

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + ++  +   ++  E    + PII L    I G EALI+W+  + G IS ++F+ +A+ 
Sbjct: 507 SLEVESKILEGIKKGEFEAYFQPIIDLKTGIINGAEALIRWNTCE-GVISPNKFIPLAKS 565

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I+  ++E+  + I    D   +    I IN + K L        +  +I +   
Sbjct: 566 NGYIIEIDKMVIEQSCKLIRELID-NGIEDFQISINTSFKLLSQKRFLSNLMEVIRRYNI 624

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               IKL  +E   + + E    LL R+R+ GI +++DDFGT  S  +Y+  +P D +K 
Sbjct: 625 GVKNIKLEITEDETIEDLEYMTDLLRRIRECGIQVSIDDFGTGYSSFNYIKTLPLDVLKI 684

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + SL+    +      I+++II +A  +  ++  + +  +   + L ++ CD IQ  +++
Sbjct: 685 DKSLLRDMEKDERTEHIIKTIINLAHILNLSVTCEGVETKEQFQLLEKLNCDNIQGYYLS 744

Query: 942 SPLGFNSILKLLK 954
            PL  N     + 
Sbjct: 745 RPLKINDFKAFIS 757


>gi|107022266|ref|YP_620593.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia AU 1054]
 gi|116689211|ref|YP_834834.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia HI2424]
 gi|105892455|gb|ABF75620.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia AU 1054]
 gi|116647300|gb|ABK07941.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia cenocepacia HI2424]
          Length = 611

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/549 (21%), Positives = 240/549 (43%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTPALEGLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 121 MCIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +         ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 178 DNLSALVPALMAAQQTADESGTC-AALLLLDLDDYQRINRALGYDAGDMLLRETAQRLKA 236

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 237 LVTPNERLARVASDKFAVVLGAADRAQASHAADALARRLQAAVREPYVFQGQTVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDGQGLALQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P  +++LL  L  +GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAHAKILLEELTGLGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E     L+ MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRALLSEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 596 LARRFEAQQ 604


>gi|172037700|ref|YP_001804201.1| hypothetical protein cce_2787 [Cyanothece sp. ATCC 51142]
 gi|171699154|gb|ACB52135.1| hypothetical protein cce_2787 [Cyanothece sp. ATCC 51142]
          Length = 616

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 212/424 (50%), Gaps = 6/424 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           +QD LT +PN+    + L   L  +    +    V+++DI+ +K IN   G  VGD +LV
Sbjct: 182 YQDALTKLPNKILLKEYLLNSLKNAKQY-HTSMGVLLLDINHFKTINKNWGYPVGDKILV 240

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +R+   L+  DI+AR   + F I+L   ++   I      + K+++  + + +  + 
Sbjct: 241 EVAQRLKSSLRDSDIVARWGDDEFIILLPKMSHGDDIEKITQRILKNVSKSLEISKTLLY 300

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DL 711
           +  S+G A +     +S+ +L+ AE+ + + K    +  +   ++       ++K    L
Sbjct: 301 LEYSLGCAIYPQDGESSNILLRKAEMELLNHKKEMISSDQKSNLTIDLKASKLLKAKTAL 360

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   EL L Y P I++   EI G+EAL++W+HP+ G I+  +F+ +AE+   I  I 
Sbjct: 361 QQALNQQELELYYQPQIKIKTGEISGVEALVRWNHPELGQINPQKFIPVAEQTDSILIIG 420

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L+   R   +W+D    P   + +N++   L D      ++ ++ +T   P  ++L 
Sbjct: 421 EWILKEACRQNKAWQDMGL-PSFIMSVNLSPLQLKDPNFINIVKQILRETKLEPHWLELE 479

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  ++ N E +  +L  LR++G+ L++DDFGT  S +++L   PF T+K   S +   
Sbjct: 480 ITEKAILANSELAYQVLQDLRQLGVHLSMDDFGTGYSCINHLPKFPFGTLKIAQSCVQTL 539

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T   + +AI+ + + +  +++  +IA+ +     +  L  + C   Q   ++ PL     
Sbjct: 540 TEKPETVAIISAAVALGNSLDLRVIAEGVETHKQLDVLQNLDCQEAQGYLLSQPLNCIEA 599

Query: 950 LKLL 953
            + L
Sbjct: 600 TRFL 603


>gi|297538018|ref|YP_003673787.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257365|gb|ADI29210.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 710

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 200/436 (45%), Gaps = 8/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ +     A  D LT +PNR++ +  L         +      V  ID+D +K+IND L
Sbjct: 260 ENAQETSRLALVDTLTQLPNRRALMQHLEAATRRCDRN-GASLAVAFIDVDNFKQINDTL 318

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD  L  + RR+   ++  D +AR+ G+ F  I+   ++          M  ++  
Sbjct: 319 GHQVGDLALQKVARRLVTAVRGCDEVARIGGDEFIAIIEEVDSYEDCITVIERMVSAVRE 378

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
              +   E+ ++ S G A +        +++  A+ AMY AK  G N    F        
Sbjct: 379 SCTINHSEVHLSISAGVAIYPKDG-NIQQLISAADTAMYRAKKDGKNQYRFFDSEIASAA 437

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + ++ DL  A+ N EL L Y   I  +  E VG EAL++W+HP  G +   +FML A
Sbjct: 438 DHLLEMQHDLKNALANDELTLHYQIKIDSITREPVGAEALLRWNHPVKGLLYPGDFMLAA 497

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +   +  AI+ +++E   R +          P  I +NI+ + +++  L   + A++S+ 
Sbjct: 498 DRFGLSYAISDWVIEESCRTLQQLTSL--SIPFNISVNISHQQMINANLVSNINAMLSRY 555

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + +  +ES  + N       L R ++ GI +TLDDFGT  S L+ L       +
Sbjct: 556 DLPKTSLIIEMTESTALKNQAIFNNQLARFKEAGIKVTLDDFGTYSSSLTNLQKWQVSEL 615

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +           +++++I +A  ++  ++A+ I  E     L  +GCD +Q   
Sbjct: 616 KLDPTFIEDIETNNRTRGVIQAVIELAHALDLNVVAEGIETEGQRVLLADLGCDEMQGYF 675

Query: 940 VASPLGFNSILKLLKE 955
           ++ PL    ++ LLK 
Sbjct: 676 ISRPLPEERLISLLKN 691


>gi|148550373|ref|YP_001270475.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148514431|gb|ABQ81291.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 555

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 215/441 (48%), Gaps = 9/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+   +  +   A QD LTGI NRQ F   L   L     ++     +  +D+D ++ 
Sbjct: 110 VRERGVLVATLQRLAEQDPLTGIANRQGFQALLNARLA---ENEGRGVALGHLDLDNFRH 166

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD +++ +  R+   L+  D LARL  + F +++ +  ++ +    A  + 
Sbjct: 167 VNDALGHQSGDRLILQVVARLKHQLEAGDQLARLGSDEFALLIDTRRDANRAEWIAERIV 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +++A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G     F   
Sbjct: 227 EALAEPYWIDGESLLLGCSLGLAHARAQ-SGADPLMWHAHIAMRQAKGSQGCTFHVFNER 285

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             R+ R    ++ +L  A+   EL L Y P + L D  IVGLEAL++W H + G +  SE
Sbjct: 286 INRNARSLADLESELRRALRRDELELHYQPRLNLADGRIVGLEALVRWRHAERGLLPPSE 345

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  +  +++ R  RD+ +  ++    P+ + +N++ +   D++L   +  
Sbjct: 346 FVPLAEQSGLIVPLGYWVISRALRDMQALCERGL-EPLHMAVNLSFRQFQDSQLLATLSR 404

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +       ++   +E+ VM   E  R  +  L ++G+  +LDDFGT  S   +L  +
Sbjct: 405 LILEHGVDARWLEFELTETAVMRRNEVVRQTMDALGRLGVRFSLDDFGTGFSSFVHLNSL 464

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +      E+   ++ ++I +A N+   ++A+ +  E  +  L   GCD 
Sbjct: 465 PITLLKVDRSFVAEMEMREENRKLVHAMINLAHNLNLEVVAEGVESEEQLALLRGFGCDQ 524

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q   V+ PL    ++  L +
Sbjct: 525 VQGFLVSKPLPIGELMAYLLQ 545


>gi|296156123|ref|ZP_06838962.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295893629|gb|EFG73408.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 667

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/448 (26%), Positives = 214/448 (47%), Gaps = 11/448 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++     L  A  D LTG+PNR+ F   L  +L  +         V V+D+D +K IN
Sbjct: 221 ETERLSVENLRLANLDGLTGLPNRRRFFSDLDKLL-TAGGATGQGIAVGVVDLDGFKPIN 279

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD +L  + RR+  L     I AR+ G+ FG++   + +  ++ D   A+  +
Sbjct: 280 DLYGHHFGDRLLEEVGRRLTSLSSPSLIAARVGGDEFGLLFSGDVSQARLCDLGAAICAT 339

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
           +  P  L +    +TAS+G A +  +  T+ E+ + A+ A+  AK   RG   + S    
Sbjct: 340 LQRPYELTDVTARLTASLGVAVFPEAGTTAIELSERADYALSFAKNHRRGATAIFSREHE 399

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I++ L LA    E+ + + PI  +  + IV  EAL +W  P  G IS  +F+
Sbjct: 400 TQIRRCNEIEQALKLADFEREISVFFQPIFDVSSKGIVAFEALARWTSPSLGTISPVDFL 459

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  MI ++   +L +      +W      P   I  N++++D+   E  +G+    
Sbjct: 460 AVAEKTDMIHSMTHVLLRKALEAAAAWP-----PQTRIAFNLSARDVSSPEAIDGVIRTA 514

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +  +P RI    +E+ ++ N   +   LG L+K+G  ++LDDFGT  S LSY+  +P 
Sbjct: 515 LASGVAPERINFEVTETALIKNVSSACETLGALKKLGAEVSLDDFGTGYSSLSYVHRLPI 574

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +          A+++SI+ ++KN+  T + + +     +  L  +GC  +Q
Sbjct: 575 DKLKVDRSFIADIVDDPAARAVVKSIVDLSKNLGLTCVVEGVETASQVNVLLGLGCTVMQ 634

Query: 937 DSHVASPLGFNSILK-LLKERFPLVKNT 963
                 P+    +L+  +   F   ++ 
Sbjct: 635 GYFFGRPVAGEDVLESFVTNGFITARSA 662


>gi|301347968|ref|ZP_07228709.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB056]
          Length = 653

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 246/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 69  FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 128

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 129 EKKFGMR-WLDLLPPHIRKRGRVALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 185

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LTG+ NR+SF  +L   L  S  +  
Sbjct: 186 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTGLFNRRSFKLQLKRTLAYS-RETQ 244

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 245 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 304

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 305 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 364

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 365 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 423

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 424 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFEPLPVSLN 482

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 483 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 542

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 543 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 602

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 603 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 641


>gi|56460043|ref|YP_155324.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56179053|gb|AAV81775.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Idiomarina loihiensis L2TR]
          Length = 763

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 221/457 (48%), Gaps = 13/457 (2%)

Query: 504 NSNGDILRYIGIAN-DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +  G++    G     I+E++K    I   A  D+LT +PNR  F ++L   LD     +
Sbjct: 312 DEFGELANTFGSMRKAISEREK---RISYQASHDHLTDLPNRSFFREQLQYRLD----GN 364

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++++I +++ +ND +G  +GDD+L  L+ R+       ++LAR+ G+ F ++  
Sbjct: 365 TSSGCLLLLNIHQFRVLNDSVGQEIGDDILRQLSARLKWCCGNAELLARIGGDEFAVLYA 424

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           S+ +   + +    +   +  P  + + +  +  +IG   +         +++ A++++ 
Sbjct: 425 SDKSEFDLDNKIKELHSFLDTPFKVGDSDYRLAFNIGVVYFPGHGNEVDLLIRRAQVSVQ 484

Query: 683 HAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            +K  +         +      R+ I E L  AV + EL+LV  P I      +VG E L
Sbjct: 485 QSKLQKSFYVEYKSGLDEQYMRRLQIIESLKDAVADKELHLVLQPKINCQTGSLVGAEVL 544

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W   K G +   EF+ +AE+   I  +  ++    A+ + SW +Q     + + IN++
Sbjct: 545 LRWQSDKLGFVGPDEFIPLAEQSGAITELTNWVCRESAKLLQSWHEQGRT--LKLSINLS 602

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DLL + L    + LI      P  + L  +ES VM +PE++   L  L+++G S+++D
Sbjct: 603 TVDLLSDALPLLFEQLIIDFPELPKLLVLEITESAVMKDPEKAIARLETLKRLGFSISID 662

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIY 919
           D+GT  S L+ L  +P + +K + + +   +E+    +I+RS I +A  +   ++A+ + 
Sbjct: 663 DYGTGHSSLAQLRRLPVEELKVDRAFVQHLSEESKDKSIVRSTIHLAHELGLRVVAEGVE 722

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E   + L  M CD +Q    + PL  +  +  L   
Sbjct: 723 NEDSWRVLQSMHCDELQGYFFSKPLPISGFIDYLNNH 759


>gi|309777216|ref|ZP_07672179.1| putative sensory box/GGDEF/EAL domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915086|gb|EFP60863.1| putative sensory box/GGDEF/EAL domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 572

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/561 (19%), Positives = 237/561 (42%), Gaps = 24/561 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++  DR   + ++     L    + G I  W   +H  DR  F  
Sbjct: 27  YDTIVNSTDDYIYLVNMQEDRALISENMLQDFDLPDLIVPGLIPLWGNLVHERDRQRFDD 86

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +         E++V    N++ W+I R     N+ G+ + + GI  ++ E K  +
Sbjct: 87  SIAAMLRGDTDEHNVEYQVHNRKNEYIWVICRGLLKRNAQGEPIFFAGIVTNL-ENKGKI 145

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D++TG+  + +  + +T +L         +  ++++ +D +  IN++    
Sbjct: 146 ---------DSITGLFTQTACENTVTQLLKH-----QCKGGILLLGLDDFSHINELNDHI 191

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL   ++ +  LL     + R  G+ F II        ++ +    +         
Sbjct: 192 FGDAVLRQFSQTMQRLLPSAARMYRFDGDEFAIIYEQAT-RKQVRELYKIIHAYCNRRHR 250

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +       T S G A +        +++K A+ A+  +K+RG N    F     +  R  
Sbjct: 251 IDNTGYFCTVSGGIAMFWEDGDNYLDLIKYADNALEASKYRGKNQCTQFSHELVKIKRRR 310

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +     L   V     + YLVY P+I     ++ G EAL++W   ++GN+   EF+ I E
Sbjct: 311 LSITNQLQNCVLRGMQDFYLVYQPLINAASMQVEGAEALLRWTSSEYGNVRPDEFIPILE 370

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I     ++ +   +    W  +   P   + IN +   +L+++L   ++  + +  
Sbjct: 371 SAGLIHQAGKWVFQEAVKTCREWVQE--NPQFVMNINFSYIQMLNDDLLPFIRRTLKQAE 428

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SP  I +  +ES  +   +  +    +LR++GI + +DDFGT  S L  L  +P D VK
Sbjct: 429 LSPEHIVIELTESCFVTEMDALKRSFQQLREMGIRIAIDDFGTGYSSLGMLSQMPADIVK 488

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   ++   E     + + ++I +  ++   +  + +  + ++K +  +  D IQ  + 
Sbjct: 489 IDRLFISAIHENSFHQSFINAVIQLCHSVGIRVCVEGVEEQAELKVVRDIQADNIQGFYF 548

Query: 941 ASPLGFNSILKLLKERFPLVK 961
           + P+   +  +   +  P+++
Sbjct: 549 SKPVEKRAFHERFLDAKPVMQ 569


>gi|326423788|ref|NP_759956.2| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319999153|gb|AAO09483.2| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 753

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/427 (26%), Positives = 204/427 (47%), Gaps = 10/427 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR+ F D L  IL  S    +    ++ +DID +K+IND LG  V
Sbjct: 322 QLKKLANTDMLTGLDNRRKFTDVLNQILQKSDALAHCH-ALLYLDIDNFKQINDQLGHYV 380

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  + +R+   +     + R+SG+ F ++L        +     A+  +++ P   
Sbjct: 381 GDQVLKVVAQRLCHHVSDAQSITRISGDEFAVLLEY-QEIDSLKARLSALIVALSQPSEH 439

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRV 705
           +     +T SIG           + ++++ + AMY AK +G N    F   +     +++
Sbjct: 440 IPNSHRLTVSIGVVLIPQDGQDLTLLMQHVDFAMYQAKSQGRNQYCFFDRLMKLRDDEKI 499

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            + E L +A+E ++  L Y PI  +   +I   EALI+W HP  G +  + F+ +AE+  
Sbjct: 500 QLIESLKIAIEQNQFVLHYQPIYDIRSHQIHCYEALIRWQHPTKGLLYPASFIELAEQSG 559

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I   +L +  + I      A   PI + INI++  L D +L E    +I +     
Sbjct: 560 LINEIGDCVLAQACQFIAQ---AAPEKPI-VSINISASQLSDPQLFERFIGIIQQYGVDA 615

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +K   +E+ +M N +    +L + +++GI + +DDFGT  S L+ L  +P + +K + 
Sbjct: 616 HSLKFELTETTLMQNIQACINILLKFKQLGIQIAIDDFGTGYSSLAILKDVPANYLKIDK 675

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           + +SII +A +++  +IA+ I      + L +  CD+ Q      P
Sbjct: 676 SFIDQINSNTGDQKVAQSIITLAHHLDMQVIAEGIEQIEQEELLAQFQCDFGQGYLFGRP 735

Query: 944 LGFNSIL 950
              +S+L
Sbjct: 736 APVDSLL 742


>gi|127514155|ref|YP_001095352.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
 gi|126639450|gb|ABO25093.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
          Length = 825

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/436 (25%), Positives = 222/436 (50%), Gaps = 6/436 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+PN+      L T +   A++++    +M +D+D++K+IND L
Sbjct: 370 EYTHELERLAMLDTLTGLPNKAMLHHELQTAIACIASEEDC-VVLMFLDLDEFKRINDTL 428

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L  +  R+   ++  D + R  G+ F I+L    +  ++++    +  ++  
Sbjct: 429 GHIQGDELLKIVAARLTNSVREMDTVFRQGGDEFLILLRQVRDEQEVSNVIHRIFSALQH 488

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P+ L   ++ VT SIG A   +S++ + E++++A+LAMY AK  G ++   F        
Sbjct: 489 PVVLGSHKLIVTTSIGLAYCNTSQLRAEELIQHADLAMYQAKSAGRSNYRVFSEEMLHQA 548

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+MI++ +  A+   +L L   PI+ L    + G EALI+W HP+ G I   +F+   
Sbjct: 549 NNRLMIEQSIGAAINEEQLVLFLQPIVELPSGRLRGFEALIRWFHPERGLIMPGDFIPDI 608

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  +  +++ + +  +   +     P ++I +N+++K  L  +L   ++  +   
Sbjct: 609 EHSEAIIEVGNYVIRKASELVAQLKSA-GWPELYIAVNLSAKHFLAPDLLNVVRQEVEAQ 667

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   + L  +E  V+   E++   +  L+ +G+ + +DDFGT  S LSYL  +PFD +
Sbjct: 668 QISAQSLLLEVTEESVIEQVEQAMAAMAALKALGVRIAIDDFGTGYSSLSYLKQLPFDLL 727

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +          E    I+ ++I +A N+   ++A+ I  +   + L+   C+  Q  +
Sbjct: 728 KIDRCFTANVLDGEADAHIITTVIELAHNLGRQVVAEGIETQQQAECLSCQRCELGQGYY 787

Query: 940 VASPLGFNSILKLLKE 955
            + PL   S+ K+L+E
Sbjct: 788 FSRPLDVASVFKVLQE 803


>gi|330957798|gb|EGH58058.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 784

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/431 (24%), Positives = 209/431 (48%), Gaps = 11/431 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  NA  DNLTG+PNR   ++RL + +            ++ + I     I++  G   
Sbjct: 352 QLAHNALHDNLTGLPNRALVMERLGSAIAAER-----PVALLYLGISNLGAISESAGAEG 406

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            + +L+ + +R+  +L+  D +ARL+   F ++L +  +         A+++S+A    +
Sbjct: 407 VEPLLLQVGQRLQGILRAGDTVARLTATEFLLLLDNTTS-DGAVGMGDAVQRSLAGLPRI 465

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
              ++ +   +G   +     ++ E++  A +A   A    G   +           ++ 
Sbjct: 466 DNLDLALECCVGITVYPEHGGSAHELVSRAAIARKDATFLPGRLQIYEDGRDLAHQRQIS 525

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A +  EL L Y P + +    +   EAL++W HP++GN+S +EF+++AE    
Sbjct: 526 LIRDLRKAPQRGELMLHYQPKLDIRQGYVRQAEALLRWTHPQFGNVSPAEFIVLAERTGS 585

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  +++E   R +  WR +  +  + + +NI++ DLL  +L   +  LI +      
Sbjct: 586 IHLLTDWVIEEAFRQLADWRQRGLV--LQVSVNISADDLLSGDLAGYVMRLIKQYGVPAE 643

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K + S
Sbjct: 644 QLVFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQS 703

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   ++ PL
Sbjct: 704 FVRDLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPL 763

Query: 945 GFNSILKLLKE 955
              +    + +
Sbjct: 764 PAAAFEAWIAK 774


>gi|315126261|ref|YP_004068264.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913]
 gi|315014775|gb|ADT68113.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas sp. SM9913]
          Length = 575

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 202/443 (45%), Gaps = 17/443 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++    + +   A  D+LTG+ +R   +D+L   +         +  V  +D+D +K IN
Sbjct: 136 QRANLEKKLHDMAHYDSLTGLASRPILIDQLQQAITSEQ-----KLAVAYLDLDNFKPIN 190

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRK 639
           D  G   GD VL ++ +R+   L+  D LAR+ G+ F  +L    +   +       +  
Sbjct: 191 DKYGHETGDFVLKTIAQRLKSTLRKEDTLARIGGDEFIFLLRGAAHTIQEYETLLQEVLI 250

Query: 640 SIAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  PI L E    + ++ SIG A  +   +T  ++L+ A+  MY AK  G N +  F  
Sbjct: 251 EVNDPIKLAEFSCSVQISVSIGVALPSDDGLTCDDILRRADQTMYQAKRSGTNRILFFDP 310

Query: 698 SSFRSDRVMIKEDL--CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                        L     +   E  L Y P + LMD +++G+EALI+W+HP  G +   
Sbjct: 311 EEESLRHAKHDLLLAAEKGIARKEFILHYQPKVNLMDHQLIGVEALIRWNHPTLGLLYPG 370

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F    E   +   I  ++L    +    W        + + +NI+   LL     E ++
Sbjct: 371 HFSEALEHPHIGILIGEWVLAEALKQHKIWTRN----HLSMSVNISPAHLLSEGFVENLR 426

Query: 816 ALI-SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            L+ S     P  ++L   ES  +GN +++  +L   R +G+S+ LDDFGT  + LSYL 
Sbjct: 427 ELLISTNNIKPKTLELEILESTTIGNVDQAVDVLNGCRDLGVSIALDDFGTGYASLSYLK 486

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P DT+K + S +       +  +I+  I+ ++K     ++A+ I  +   K L  MGC
Sbjct: 487 KLPLDTLKIDQSFVKKLLSDHEDKSIVTCIVALSKAFGYNLVAEGIESQELEKVLIGMGC 546

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            + Q  ++A P+    +   +K 
Sbjct: 547 YHGQGYYIAKPMSAEKMNLWIKN 569


>gi|83644276|ref|YP_432711.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632319|gb|ABC28286.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 783

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 208/450 (46%), Gaps = 15/450 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I + +DI E+      I   A  D LTG+ NR   +  +   L       N    ++ +
Sbjct: 332 FIKMGSDIEER---EYKITYQATHDGLTGLFNRNKVIAEVEDAL----RRHNAPFLIISL 384

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           +I+ +K IND  G  VGDD L ++ +R+ E +    + ARL  + F  ++     +    
Sbjct: 385 NINGFKNINDTFGPKVGDDCLRAVGQRLVEFIPKNPVCARLGADEFLCLV-DVFGNESAR 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--- 688
                +   +A P  + +  +T++ SIG A +      + E+L+ A +A+  A+      
Sbjct: 444 TICDKLLAHLARPFKVDDLRLTLSFSIGVAQYPEHAAAAEELLRRASIALDKARSERCAL 503

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +      +  R  +++    L +A ++ +L + Y P + L    +   EALI+W HP+
Sbjct: 504 RFYESGEDEAHLRRLQLLQDLKLAIAEDDGQLCMYYQPKMHLASGRVDKCEALIRWSHPE 563

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I    F+ +AE+  +I ++  ++   +   +  WRDQ     +   IN++++DL  +
Sbjct: 564 QGFIPPDIFVELAEQAGLIASLTDWVTHTVINQVAEWRDQGID--LQAAINLSAQDLERD 621

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           EL + +   +         I    +E  +M + + +  L+ R R+ G +L++DD+G   S
Sbjct: 622 ELLDNVLNQLETLKLPTRAISFELTERDMMSDADHAIALMQRFRQRGFTLSVDDYGIGYS 681

Query: 869 LLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS L  +P   +K + S +     +     I+RS I +  +    +IA+ +  +  +  
Sbjct: 682 SLSKLKQMPVSEIKIDKSFVIPLEQSASDKIIVRSTIELGHSFNLKVIAEGVESQRSMDL 741

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L  MGCDYIQ   ++ P+    +   L++R
Sbjct: 742 LAEMGCDYIQGYFLSKPMPAKELASWLRQR 771


>gi|320450304|ref|YP_004202400.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Thermus scotoductus SA-01]
 gi|320150473|gb|ADW21851.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Thermus scotoductus SA-01]
          Length = 754

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 121/450 (26%), Positives = 223/450 (49%), Gaps = 22/450 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  + E  L  A+ D LT +PNR++FL+RL   L L+   +     V ++D+D +K++N
Sbjct: 319 ERVLAQEKALYLAYHDPLTDLPNRRAFLERLEEHLLLAQR-EGWSLVVGLLDLDGFKQVN 377

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD +L  + RR+   ++  D +ARL G+ F  +L    + +  A  A  +  +
Sbjct: 378 DRYGHAVGDWLLAQVARRLRSAVRASDGVARLGGDEFAFLLPHL-DPVSAAVVAERLLAA 436

Query: 641 IAMPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
           +  P N    E  ++V AS+G A +       S +L+ A+LA+Y AK  G    +    +
Sbjct: 437 VRRPHNPPGLERRLSVRASLGLALYPQDAQDPSGLLQAADLALYQAKVHGDRYALFGREL 496

Query: 698 SSFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 ++ ++E+L  A++      L L Y P + L    I  LEAL+++ HP  G +S 
Sbjct: 497 QENFKHQIWLEEELRKALQRPRSLGLTLHYQPRMDLETGRITALEALLRFQHP-LGPLSP 555

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            E + +AE   +I+ +  F LER AR             + + +N++   L   EL E +
Sbjct: 556 KEVIPLAERTGLIRPLTRFALERAARTARRL-------GLPVGVNLSPAYL-HEELVEWL 607

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +       +++  +ESV+M   E+   LL  LR++G+ + LDDFGT  S L+YL 
Sbjct: 608 AGMLRRLEVPGELLEVEITESVLMEAVEQRSGLLEALRRLGLRVALDDFGTGYSSLAYLA 667

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           ++P D +K + S + G     K   ++ ++  + + +   ++A+ +  + ++  + + GC
Sbjct: 668 HLPLDLLKIDRSFVRGLQPGTKEARVIEAVASLGRILGKRVVAEGVETQDELLAVRQAGC 727

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             +Q   ++ P+        L    P  ++
Sbjct: 728 HEVQGFLISPPVPAEEA---LARWGPPRRS 754


>gi|146337697|ref|YP_001202745.1| hypothetical protein BRADO0565 [Bradyrhizobium sp. ORS278]
 gi|146190503|emb|CAL74502.1| conserved hypothetical protein with GGDEF domain (N-terminal) and
           EAL domain (C-terminal); putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 678

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 205/441 (46%), Gaps = 13/441 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +     A  D+LT +PNR+ F   LT     +  D   R  V +ID+D +K +ND 
Sbjct: 227 QALSDENFRLANLDSLTDLPNRRRFFSELTNAFAEAERD-GTRLAVGIIDLDGFKPVNDT 285

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPD---ILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            G  VGD VL+   RRI ++ +       LARL G+ FG+++        +      + +
Sbjct: 286 YGHTVGDRVLMEAARRIRDVCERRGAQVHLARLGGDEFGLVVTGNPTDDDLLSLGRDITE 345

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I +P         ++ S GFA +  S   +  + + A+ A+YHAK R       F    
Sbjct: 346 RIKLPYQFDATHSGLSCSTGFALYPRSATAADALYECADYALYHAKRRARGQAIIFSSEL 405

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               R    I+  L  A   +E+ L + PI+   +    G E L +W+ PK G +S + F
Sbjct: 406 EAEIRSRSVIEHLLRTADFETEMDLAFQPIMDATNSRTTGFEVLARWNSPKLGLVSPASF 465

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE + +I+++  F+L +      +W D      I I  N+++ D+   E    + A+
Sbjct: 466 IPAAERIGVIRSLTRFLLVKALAAARTWPD-----DIRISFNLSAHDICAPEGVLPLIAV 520

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I  +   P RI+   +E+ V  +  R+   +  L+ +G  ++LDDFGT  S LS++  +P
Sbjct: 521 IQASGVPPRRIEFEITETAVAFDFARAEESIAALKALGCGISLDDFGTGYSSLSHVHRLP 580

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I++S+  +  +++ + + + +  +  +  L R+G DYI
Sbjct: 581 LDKLKVDRSFVHDVNANPVSHKIIKSLTGLCADMDISCVVEGVETKEQLDSLKRLGADYI 640

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  + A P+  ++I   L   
Sbjct: 641 QGYYFAEPMPADAISGFLARE 661


>gi|85711521|ref|ZP_01042579.1| Signaling protein with DMT-family integral membrane sensor domain,
           GGDEF and EAL domains [Idiomarina baltica OS145]
 gi|85694673|gb|EAQ32613.1| Signaling protein with DMT-family integral membrane sensor domain,
           GGDEF and EAL domains [Idiomarina baltica OS145]
          Length = 688

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 224/441 (50%), Gaps = 6/441 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +++        D LTG+ NR   + ++  ++D     +N   +VM++ + ++K +N+ LG
Sbjct: 240 AVQRAEYLHTHDALTGVANRHQLVSKIPVLVDYC-RSNNRHLSVMLLGVSRFKSVNERLG 298

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           I  GD VL  + RR+ +  + P  +AR+SG+ F +I     +   I + A  ++  ++ P
Sbjct: 299 IRGGDQVLKEIARRLQQFKRKPVTVARISGDVFAVIFDHLKSRRHIIELATELQHELSRP 358

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           I + +R+IT++  +G + +    + +  +L  A LA+  AK +  +++  +      +  
Sbjct: 359 IEVNQRQITLSVGVGISRYPQHGVNAEILLNKATLALTDAKRQNASNITFYERGMDDAFS 418

Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +I  +  L  A +N+E  +   P      +++ G EALI+W HP+ G +S +EF+   E
Sbjct: 419 QLIDMEPILRKAFKNNEFVIYLQPQFDFDYQQLCGFEALIRWQHPERGLLSPAEFIPHIE 478

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +L + + ++ ++LER A  +  W  + +     I +N++++    ++L E +  L+    
Sbjct: 479 QLGLTELLDNWVLERAAEILADWNKRFSHV-WPIAVNLSAQQFQQSKLVEHLTRLVDNYQ 537

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S ++L  +E+V M +      ++ RLR +G  + +DDFGT  S L+YL  +P + +K
Sbjct: 538 LDASYLELEITETVAMSDLSNGMDVIRRLRDLGFKVAIDDFGTGHSSLAYLRSLPINKIK 597

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S ++          IL+++I +A  +   +IA+ I  +     L ++GCD +Q    
Sbjct: 598 IDRSFVSELQVNRTDATILKAMIRLAHGLGKRVIAEGIETQDQQDILQQLGCDMMQGYFY 657

Query: 941 ASPLGFNSILKLLKERFPLVK 961
           + P+      +L++    L +
Sbjct: 658 SPPIKLELAEQLIENELKLGR 678


>gi|206602907|gb|EDZ39387.1| Putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Leptospirillum sp. Group II '5-way CG']
          Length = 884

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/488 (25%), Positives = 235/488 (48%), Gaps = 7/488 (1%)

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E+    AD       + + P+ N +  +  ++    D+T +++  + I   
Sbjct: 371 RGSIEEFSGEWCGVTADGTAFLAEVLVSPIRNDSLKLTHFLVHMKDVTSEREKEKEIHRL 430

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A QD LTG+ NR  FL R    L+ +      R  +  +D+D +K++ND LG A GD  L
Sbjct: 431 AHQDPLTGLLNRNGFLKRSREELERNLRSGK-RLALAFLDLDGFKELNDTLGHAAGDRFL 489

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L+RR+ E+++    L R+ G+ F  +L  E + L        + + ++ P+   E   
Sbjct: 490 EILSRRMSEVMEGKGALGRIGGDEFV-VLAEEKDDLLFERLFTDLLEQVSRPVAFEEGHF 548

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--ED 710
             T S+G A +    +T  E+L+ A+L MYHAK  G N +  F  +   + R   +    
Sbjct: 549 QTTVSVGVAIYPDDGLTVEELLRKADLTMYHAKSAGKNTIRFFEKAIEENVREWYEKGTA 608

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   E  L + P + + +  ++G+EALI+W+ P  G +  + F+ +AEE  +I  +
Sbjct: 609 LRQAIARKEFELYFQPQVDVRNNRLMGVEALIRWNRPDKGMMLPASFIPLAEETGLIHPV 668

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++E     +  W  +   P  ++ +N++++          +++   +   S SR+ L
Sbjct: 669 GDWVMEEALSLLEKWERK-GYPSFWLAVNVSARQFRSESFWSDLESRFDRYPASASRLSL 727

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+++G+   S   +  LRK G++  +DDFGT  S LSYL  +P D++K     +  
Sbjct: 728 ELTESLLVGDSGVSAGRIASLRKRGVTFVIDDFGTGYSSLSYLTRLPVDSIKIPQEFVLR 787

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               ++   ++  I  MA+N++  +I +     ++I+ L  +GC  IQ   ++ PL  + 
Sbjct: 788 MKENDRDRKMVEIIAHMARNLDLVLIGEGAESNLEIRMLRDLGCFVIQGFSISRPLSLSG 847

Query: 949 ILKLLKER 956
              +L++ 
Sbjct: 848 FESVLEQH 855


>gi|288942758|ref|YP_003444998.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Allochromatium vinosum DSM
            180]
 gi|288898130|gb|ADC63966.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Allochromatium vinosum DSM 180]
          Length = 1114

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 197/436 (45%), Gaps = 9/436 (2%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +  +S E +   A  D LT +PNR  F + L  +++           V ++DID +K IN
Sbjct: 680  QLHQSREEMRHRALHDALTELPNRARFREALGEVIENCRRTGQG-FAVALMDIDHFKTIN 738

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG   GD +L ++ +RI   L  P ++ARL G+ F ++L    ++   + +A  + ++
Sbjct: 739  DTLGHDKGDVLLCAVAKRIRAELPEPGLVARLGGDEFALLLPDITDTAVASLWAERIVEA 798

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +   I + E   ++T+S+G A          E+LK A+LA+YHAK  G N    F     
Sbjct: 799  LRRAIVVGEDRFSITSSLGLAMGGPDSE-PGELLKQADLALYHAKEAGRNRASHFDSDLE 857

Query: 701  RSDRVMIKEDL----CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            R     ++ D        ++  E+ L     I          E L +W       I   +
Sbjct: 858  RRALKRLEIDRAVLGRSPMDAVEILLQPQIAIAARAGTPR-FEVLARWRTEDGTLIMPGD 916

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+  AE   +I A+   +L    R +    +Q       + IN+++ DL        +  
Sbjct: 917  FIPAAERNGLIGAVTAAVLRLAIRRLRQHLEQNGTEA-RLAINVSAADLEARGFARRLLE 975

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +      P  I++  +ES+++      +  L  + + GI L+LDDFGT  S ++YL  +
Sbjct: 976  DLHAADVPPDLIEIEITESMLLRMTPSLKSTLNVIHRGGIQLSLDDFGTGFSSMAYLREL 1035

Query: 877  PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P  ++K +   ++G  + +   ++  +I MA +I   +IA+ I     ++ L  +GCD+ 
Sbjct: 1036 PISSLKIDREFISGIESSRDRNLVAGMIAMAHSIGKEVIAEGIETPRQLERLAEIGCDWG 1095

Query: 936  QDSHVASPLGFNSILK 951
            Q    + P+  +  L 
Sbjct: 1096 QGYLWSRPIPPDQALA 1111


>gi|300863679|ref|ZP_07108613.1| putative Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Oscillatoria sp. PCC 6506]
 gi|300338311|emb|CBN53759.1| putative Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Oscillatoria sp. PCC 6506]
          Length = 580

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 215/436 (49%), Gaps = 6/436 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E I   AF D LTG+PNR   L  + + ++      +L   ++ + +++Y+ +   LG
Sbjct: 139 ANEQIRYQAFYDELTGLPNRNLLLKEMRSGINTIVESGHLE-AILFLALNRYQIVKYGLG 197

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + G+ +LV + RR+   +   +++AR+  N F I L +  NS    D A  +R+S+  P
Sbjct: 198 HSRGEQLLVEVARRLEACVLNANLIARVGENTFAIWLANITNSQLALDAAERIRQSLERP 257

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
            NL    +  + SIG A        + ++L+ A+ A + A  RG      F V       
Sbjct: 258 SNLNGTAVFSSISIGIALSAIDTEDAEDLLRAADAATHEAFVRGAGSAVVFNVDMQSRAL 317

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ ++ DL  A+   + YL Y PI+      IVG EAL++W HP  G +  SEF+ +AE
Sbjct: 318 KQLQLETDLQNAINLQQFYLNYQPIVSFATGRIVGFEALVRWRHPSRGLVPPSEFIPVAE 377

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKT 821
              +I A+  ++L      +  W+ +     P+ + +N++   L    L   + +L+   
Sbjct: 378 RTGLIVALGEWILSEAVACLSKWKLEFPNYLPLNMSVNLSGLQLFAPNLLPLLDSLLRVH 437

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +KL  +ESV+M N E +  +L  L+     + LDDFGT  S LSYL  +P DT+
Sbjct: 438 NLKGEFLKLEITESVLMENAEAAADVLELLKTRQFRVCLDDFGTGYSNLSYLQLLPIDTL 497

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    E  K++A++ +I+ +A ++E  +IA+ +  E  +  L  +GC   Q   
Sbjct: 498 KIDRSFVNCMEEGGKKLALVGAILNLASSLELEVIAEGVETEEQLIMLRALGCHSYQGYF 557

Query: 940 VASPLGFNSILKLLKE 955
            + PL     + LL+ 
Sbjct: 558 FSRPLEEEGAVALLRA 573


>gi|89901262|ref|YP_523733.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
 gi|89345999|gb|ABD70202.1| diguanylate cyclase/phosphodiesterase [Rhodoferax ferrireducens
           T118]
          Length = 984

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 144/828 (17%), Positives = 299/828 (36%), Gaps = 53/828 (6%)

Query: 149 FRITINPG---AVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIF 205
           F + ++P      V        P      +W  N  + +   F    G++ G   +LAIF
Sbjct: 143 FALELSPALKDEQVVCRTSAIGPARLSALIWRANNLQTSAQEFHRKSGLLDGGIIVLAIF 202

Query: 206 LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS-- 263
           + +  ++NR+ + +   A   + L   ++  G+ ++ +        + +           
Sbjct: 203 VLVTALINRNRLYVLFAAWLVINLRMGALSAGWDTQWLGYTVPYDWLLQGRMITITLYYV 262

Query: 264 -SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
            +LI+F  ++            +      C    F +      + +S        +V   
Sbjct: 263 LTLILFTSLFRDDLLHVGHEWLVRVFQWTC----FPLLILSSFLPSSSYLPLFWPVVGAG 318

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
              + Y  ++   +    +  W    I    +            I+  +     +   L+
Sbjct: 319 ISMLAYLLVRILRKTRSRVAMWYGAAISITLVASFYEVLSAALGIKGLIGSVNSVTAALV 378

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
              +    +A     + +     +  L          ++  D+     +  P +  +LG 
Sbjct: 379 SSLLAALAIAEQMRHEHVQRLEVQAKLEHTYAAMPIGLFTLDLRGRFTSANPALVGMLG- 437

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +      W  Y                     G      ++   +     M I+ +
Sbjct: 438 -PNVLTDGANAWQQYF------------------TNGAWTQLHQMVH-NKSEDEMEIQGK 477

Query: 501 PMSNSNGDILRYI----------GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           P+   +G     +          G   D+TE+ ++   +   A  D+LT + NR+     
Sbjct: 478 PVPGYSGSKCFLVKATLAGDKIEGSLQDVTEKSRATADLYFLADHDSLTKVLNRRGIAKA 537

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
             + +  S TD N    +  +D+D++K IND+ G  VGD+VL  +  R+ +LL       
Sbjct: 538 FNSAIA-SLTDRNAPVALAYLDLDRFKLINDLFGHGVGDEVLQQVCGRVSDLLSRELQFG 596

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+ G+ F I+      +         +     +P ++ E    V  SIG     +  +  
Sbjct: 597 RVGGDEFVIVFPDTPIARAAVMCRGIIDSIDTLPYHVGENAFHVRGSIGLIEVRA-GMQF 655

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHP 726
           ++ +  A+ A   AK      +  +  +          + +   L  +     LYL   P
Sbjct: 656 NDAMSTADRACRQAKSGSSGGLVVYEKNAIAFKKHEAELKLIALLATSSATDGLYLEMQP 715

Query: 727 IIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           I+      E +  E L++        + +   +  AE    +  I+ ++L      + + 
Sbjct: 716 IMSLTKPYESLNFEVLLRMRDIDGNVVPTDRLIAAAENSGRMGMIDRWVLSTTLAWLNTN 775

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q      F+ +N++   L D +  + +  ++ + L+   ++ L  +ESV + + E +R
Sbjct: 776 YTQLKHTK-FVCMNLSGASLNDEKFLQEVYVMLEQNLHLVGQLCLEITESVALHDLENTR 834

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
             + ++R  G  + LDDFG   +  SYL     D +K +GS +         IAI+ +I+
Sbjct: 835 RFVNKVRGYGAKVALDDFGAGYTSFSYLKEFTADLLKIDGSFIVNMNKHPANIAIVEAIV 894

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +AKN+   +IA+       ++ LT +G DY+Q   VA     + +LK
Sbjct: 895 NLAKNLGMKVIAEWAEDNATVQTLTEIGVDYVQGFAVARAQHPDRLLK 942


>gi|289663282|ref|ZP_06484863.1| putative signal transduction protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 801

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 105/586 (17%), Positives = 218/586 (37%), Gaps = 15/586 (2%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
             +V  +  +   +I  VLA       + S   R   A   +   +  +D+  + +    
Sbjct: 215 VMVVCSLATLLLVLITCVLAMRRIRDYLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANA 274

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            +A +L      +          +H  D           + + +     E R   AD   
Sbjct: 275 SMANVLFYRPEEL--QACTLAEVMHPEDIKLDS---RGMIDWPKLLQSGELRFLRADGGV 329

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W       +     +    + +  D++   +  + +  +A  D +TG+ NR     RL 
Sbjct: 330 MWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLL 389

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +++L      +   +  +D+D +K +ND  G AVGD  L      I   L+  D L RL
Sbjct: 390 RLIEL-PQSPQMCHALCFVDLDHFKLVNDTFGHAVGDRFLCHFADVITMQLRPGDWLGRL 448

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSS 671
            G+ F I+L +  +  +       M  ++  P +    R +T + S G           +
Sbjct: 449 GGDEFAILLAN-TDLAQAQLVLERMHGTLGQPWSHQGGRPLTPSCSFGVVEIRQGVSDLN 507

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPI 727
            ++  A+LA + AK  G N +  F  +     +          +  A+    L L    I
Sbjct: 508 ALMTAADLACHAAKEEGRNRIRCFNENDLALAQRRHDGGWISAVQQAIAEERLLLYAQKI 567

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             L D   +  E L++        +S  EF+   E   + + ++ ++LE +   + +   
Sbjct: 568 QVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLSANPM 627

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 +   +N++++ +   +  + + AL  +      ++ +  +E+ V+G+ E ++  
Sbjct: 628 HVATLDL-CHVNLSAQSIAQPDFLDFVFALFERYPSLVPKLCMEITETAVIGDLEHAQRF 686

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  +R     + LDDFG+  +   YL     D +K +   +          A + SI  +
Sbjct: 687 VQSVRARSCHVALDDFGSGMASFGYLKQFTVDVLKIDCGFVRNYAHDAVDRAAVHSIAQV 746

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +   ++A+ +  E DI  L   G   +Q   +  P     ++ 
Sbjct: 747 GLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEDLVH 792


>gi|254820324|ref|ZP_05225325.1| GGDEF domain-containing protein [Mycobacterium intracellulare ATCC
           13950]
          Length = 621

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/462 (24%), Positives = 210/462 (45%), Gaps = 9/462 (1%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +      +     +   +  +  + + I   A  D LTG+ NR++ +  L   L     
Sbjct: 145 WLPEELNALQAIAALFAQLQARVVAEQQIHYLAEHDELTGLLNRRALIAHLDDRLAKGQP 204

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                 +V+ + ID++K IN  LG   GD  + S    + E  + P ++AR  G+ FG++
Sbjct: 205 GP---VSVVFLAIDRFKVINSRLGQDAGDRFIESFAALLREATRVPSVIARFGGDEFGVV 261

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +  +      FA ++   +   I +    ++ T SIG A+      T+S++L+  + A
Sbjct: 262 PSAAMDVEAAEAFAHSLHGRVHQQIPIDGEMLSRTVSIGVAAGLPGDETTSDLLRRVDQA 321

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE--LYLVYHPIIRLMDEEIV 736
              AK  GGN+V +FR     +D +   I+  L   +E     L L Y P   +   EI+
Sbjct: 322 TRSAKASGGNNVATFRPEMSTTDMIRNDIELHLEGMIEGGGGALVLHYLPEFDMRTGEIL 381

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HP  G +    F+ + E + +   +   ++         WR         +
Sbjct: 382 GTEALIRWQHPTLGLLMPDSFIQVVESINLGAKLGRLVMRSACAQFGLWRSHGVGKGTVL 441

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++   L+   + + + A + +    PS + L  +ESVV+ + + +R  L  L+ +G+
Sbjct: 442 RINVSPVQLVTAGIVDTVAATLDEFGLDPSTVCLEITESVVVQDIDATRQTLFGLKDVGV 501

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
            + +DDFGT  S+L+YL  +P D++K +   +         +AI+RS + +A      ++
Sbjct: 502 QIAIDDFGTGYSVLTYLKSLPVDSLKIDKGFVQNLDTNAGDLAIVRSTMALADAFGLDVV 561

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +      + L  +GC   Q   ++ P+   ++  LL +R
Sbjct: 562 AEGVETVAAAERLLSLGCHRAQGFLLSRPIDSAAMESLLAKR 603


>gi|227015856|gb|ACP17953.1| putative phospholipase A2 family protein [Pseudomonas
           nitroreducens]
          Length = 645

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 197/437 (45%), Gaps = 9/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I   AF D LT +PNRQ F  +   ++D S    +    +++I + ++ +IN+ 
Sbjct: 207 RETEAIIHHMAFYDALTQLPNRQFFYKKAQALIDGSK-GVHQSFALLIIKVRQFHEINET 265

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD +L+ + +R+ E       + R+    F ++L +  +       +  +     
Sbjct: 266 FGFPQGDKILMEIKQRLCETFGSYAEVFRVGDAEFALLLHN-ADVESATHISHRVVSLFQ 324

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                         ++G A +    +    ++++A  AM  A+  G ++   F       
Sbjct: 325 TQGEKTGLNQYTRLTVGIAVYPGHGLEPELLIRHARSAMSEARRTGRDY-AVFSNRLDEG 383

Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               ++   +L  A+ + +L L   P +      + G EAL++W       +S SEF+ +
Sbjct: 384 CSRRLELTAELRDAISSGDLMLYCQPKVSSDKSTLCGAEALVRWRSRAGEMVSPSEFVPL 443

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  +  ++LE   R   +W +      I + +N++++DL D  L   ++ L++ 
Sbjct: 444 AEFSGLITQLTHWVLETAFRQRFAWHELGIN--IPLAVNLSAQDLYDPRLVGKVEGLMAT 501

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S I+   +ES +M +P  +   + +++ +GI   +DDFG   S LSYL  +P D 
Sbjct: 502 WGSQGSWIQFEVTESGLMKDPSVALETIKKIKSMGIKFAIDDFGVGYSSLSYLSNLPVDL 561

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       +  AI+ S I +A  +   ++A+ +  E     L +MGCD IQ  
Sbjct: 562 IKIDQSFVKAMLNEPEAAAIVGSTIELAHQLNFEVVAEGVESEEVRDRLEKMGCDIIQGY 621

Query: 939 HVASPLGFNSILKLLKE 955
            +++P+      K + E
Sbjct: 622 FISAPIPIEEFRKWVAE 638


>gi|302870689|ref|YP_003839326.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|302573548|gb|ADL49750.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
          Length = 821

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 116/425 (27%), Positives = 205/425 (48%), Gaps = 8/425 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E     A  D LTG+ NR+  LD  +  L   +   +    +++ID++ +K++N
Sbjct: 346 ELARIAEDHAYAATHDALTGLSNRRHLLDEGSAQLT--SRHADGVTALVLIDLNHFKEVN 403

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL+ +  R+    +  D++ARL G+ F ++L         A  A A+  +
Sbjct: 404 DTLGHGAGDQVLIQVAERLRGAARPDDLVARLGGDEFAVLLRGLPAPAVAAHRAEALLAA 463

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  P++L    I+V AS G A   ++   +  +L+ A++AMY AK  G      +    +
Sbjct: 464 LHDPLDLDGMRISVEASGGIAVAPATGGMAE-LLRRADVAMYQAKRAGQRVATYAPARDT 522

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  +L  AV + E  + + PI+ L   E++G EAL +W HP  G I    F+ 
Sbjct: 523 ADLSRLTLGGELPRAVADHEFTVNFQPIVDLASGEVIGAEALARWHHPTHGLIDPLRFLE 582

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++ A    +L++      SWRD      + + +N++ + LLD      + A + 
Sbjct: 583 AVERSGLLPAFAEAILDQALIAAGSWRDAGFD--LPVSVNVSPRSLLDARFPGAVLARLR 640

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P R+ L  +E++ +   +    +L RLR  G+ L LDDFGT  S LS L  IP  
Sbjct: 641 AHDLPPDRLVLELTETLTLSQLDVVDRVLSRLRDSGVRLALDDFGTGYSSLSLLSRIPVH 700

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    +  +  A++RS + + ++++ T++A+ +  E   + L  +GC   Q 
Sbjct: 701 ELKIDRSFVGAMETAPEAAAVIRSTLDLGRSLDLTVVAEGVESEPQRRALWELGCAAGQG 760

Query: 938 SHVAS 942
              A 
Sbjct: 761 HLFAR 765


>gi|161525286|ref|YP_001580298.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia multivorans ATCC 17616]
 gi|189349976|ref|YP_001945604.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|160342715|gb|ABX15801.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
 gi|189333998|dbj|BAG43068.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 611

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 243/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSEASLRFIGYHRDYLHT--LTLRDLIAEQDTAALEDLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + +R + + +  +  +   A DI+  +     +      D +TG+
Sbjct: 121 MSIVKSL---TYPLDVELRAVKSRHHGVEGFAIAAFDISSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A D+     ++++D+D Y++IN  LG   GD +L    RR+  
Sbjct: 178 DNLSALVPALIRA-QQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRT 236

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   ++LAR++ ++F ++L               A  ++ ++  P     + + ++ASI
Sbjct: 237 LVAPDELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERAAPHRAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P  ++ LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +    + 
Sbjct: 596 LARRFAAQQ 604


>gi|85708151|ref|ZP_01039217.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
 gi|85689685|gb|EAQ29688.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
          Length = 561

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 204/438 (46%), Gaps = 19/438 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  NR+S +   T+ L   A    L    ++ID+D +K+IND+ G ++GD VLV +
Sbjct: 98  DPLTGCLNRRS-MAGATSALQEFAKTRGLAIAYIMIDLDNFKQINDMHGHSIGDAVLVQM 156

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITV 654
             RI   L     LARL G+ F  +   +  +  ++ D  + + +S+A+P       I  
Sbjct: 157 ASRIRNQLPKEARLARLGGDEFAFVTPYDPVSRERVDDLVVRLFESMAVPFEHNGISIDA 216

Query: 655 TASIGFA------SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706
           T SIG               TS  +++ A++AMY +K  G N    F  S       R  
Sbjct: 217 TISIGVTSDYEDNCIDPDVATSDALMQRADMAMYQSKKEGKNRYFWFEPSMEDELRFRHE 276

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  +   + NSE    Y   + +   E+VG E L +W  P  G +S   F+ +AE++ +
Sbjct: 277 LESGIRRGLVNSEFVPYYEQQVDIESGELVGFEMLARWHSPTMGKVSPEIFIPVAEDIGV 336

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++  ++ +   D   W ++     + + INI+   L D    + +   +++  + P 
Sbjct: 337 ITELSDQLMSQAFIDAREWHEE-----LTLSINISPVQLRDPWFAQKILKALTEHNFPPH 391

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +ES +  N    R ++  LR  G+ ++LDDFGT  S L  L  +PFD +K + S
Sbjct: 392 RLEIEITESCLHENIGMVRSIITSLRNQGVRVSLDDFGTGYSSLEQLRTLPFDRLKIDRS 451

Query: 887 LM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            +      + K   I+ +I+ + + +E  I A+ I  E  +  L +MG    Q  +   P
Sbjct: 452 FVGELRNPSTKSR-IVDAIVSLGRGLELPITAEGIEDEEILDALKKMGKLKGQGYYYGQP 510

Query: 944 LGFNSILKLLKERFPLVK 961
                + + LK    L +
Sbjct: 511 ENAEEVARRLKSAGRLAR 528


>gi|221201413|ref|ZP_03574452.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia multivorans CGD2M]
 gi|221208031|ref|ZP_03581037.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia multivorans CGD2]
 gi|221172216|gb|EEE04657.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia multivorans CGD2]
 gi|221178681|gb|EEE11089.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia multivorans CGD2M]
          Length = 611

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 243/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSEASLRFIGYHRDYLHT--LTLRDLIAEQDTAALEDLLARAARSGQVEKAT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + +R + + +  +  +   A DI+  +     +      D +TG+
Sbjct: 121 MSIVKSL---TYPLDVELRAVKSRHHGVEGFAIAAFDISSWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  + +  L      +A D+     ++++D+D Y++IN  LG   GD +L    RR+  
Sbjct: 178 DNLSALVPALIRA-QQTADDEGTCAALLLLDLDDYQRINRALGYDAGDALLRETARRLRT 236

Query: 602 LLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   ++LAR++ ++F ++L               A  ++ ++  P     + + ++ASI
Sbjct: 237 LVAPDELLARVASDKFAVVLAAPDRARACDAADALARRLQAAVREPYTYHGQPVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGNH--VESFRVSSFRSDRVMIKED 710
           G A +   +           +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERAAPHPAQHHSPLLRRADHALAQAKASGGNALAFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +  + F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPVHGLVPPATFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQGLALQ-YVAVNVSPQQFRDPRFTQSVRDAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P  ++ LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAHAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRALLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +    + 
Sbjct: 596 LARRFAAQQ 604


>gi|166712620|ref|ZP_02243827.1| phosphodiesterase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 788

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 216/442 (48%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  ++D +         V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLERLKEVVDQTVAAGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ +++ +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAVSVQQDAQRLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSD 703
            L +  I + ASIG A           +L+ A++A              +R         
Sbjct: 463 VLPQARIQLEASIGIALIPDHGADPDTLLRRADIARRQVGTTSAIGASVYRLGQDEQHLR 522

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  A+  +EL L + P I L  +++  +E L++W HP  G I   EF+ +AE 
Sbjct: 523 RLRLTGDLRQAIGANELTLRFQPKICLRSDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L+   R    WR+Q  +    + IN+++ DL D  L + ++  +     
Sbjct: 583 SGVIHPLTRFVLDEALRCQAQWREQGLVLG--MAINLSALDLSDPGLPDFVRGRLEHHAV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K 
Sbjct: 641 PAQSVTLELTESALMRDVEFALHMLHQLRGVGVRLSIDDFGTGYSSLAQLKRMPVNELKI 700

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 701 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENATALALLRGYGCDMVQGYLYS 760

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 761 PPLEEAPLVAWCMRQLGMTSAA 782


>gi|170692934|ref|ZP_02884095.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170141932|gb|EDT10099.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 474

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 115/458 (25%), Positives = 215/458 (46%), Gaps = 12/458 (2%)

Query: 505 SNGDILRYI---GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           ++G  L +          T Q+ +   +L   F D+LTG+ NR     R   +L  +   
Sbjct: 11  ASGVPLHFAHDDATLKSPTVQRVADGRLLHALFVDSLTGVYNRAYATGRAQQLLKSARA- 69

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              R  ++V+++D + +IND+    +GD +L S+ +R+   L   D+LAR+ G+ F I+ 
Sbjct: 70  --ARVAMLVVNVDGFSRINDIADYDLGDRLLRSVAQRLARALATNDLLARIGGDEFLIVT 127

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +   +A FA  M    A P  +  RE  V+AS+G A        ++ ++++A  AM
Sbjct: 128 EHHGHMPMLAAFAQQMLALFAEPFVIAGREYRVSASVGVARSNDGARDAALLMRDAGAAM 187

Query: 682 YHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             AK    G     +  +      R  I+  L  A++  EL + Y P++     E + +E
Sbjct: 188 RRAKVHAPGNVCFFTRDMKEAAQRRFAIENRLRDALKAGELTIAYQPVVAAASRETIAVE 247

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W   + G+++ +EF+ IAE+  +++ I  ++LE+    + +WR     P + + +N
Sbjct: 248 ALLRWTSSELGDVAPAEFIPIAEQAGLMEDIGDWVLEQACAQVANWRWSIA-PDVSVSVN 306

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I+     +  L + + A ++ +   P  ++L  +E +++ +    R  +  L K+G++L 
Sbjct: 307 ISPVQF-NARLVQRVAACLANSGLDPCALQLEITEGILLPDDATVRATMAALAKLGVTLA 365

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  + LSYL       +K + S + G        AI  +++ MA     ++ A+ 
Sbjct: 366 IDDFGTGYASLSYLKRFALHGLKIDRSFVAGLPGDTDCAAIAEALVKMAHACGMSVTAEG 425

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  E     L  MGCD +Q      P         L +
Sbjct: 426 VETEQQAVMLREMGCDALQGYLFGRPGTAADCAGRLSD 463


>gi|253995501|ref|YP_003047565.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253982180|gb|ACT47038.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 578

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 212/441 (48%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K++ E +   A  D+LTG+ NR+ F D L   + L+   +      +++D++ +K IN
Sbjct: 130 ERKRTEERLNHLAHHDSLTGLSNRKHFYDTLKNSIALARRHETKLAL-LLLDLNGFKAIN 188

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VGD +L  + +R+ E ++  D +AR+ G+ F +IL    +    A     + +S
Sbjct: 189 DTLGHYVGDLLLQGVAQRLRECMRETDCVARIGGDEFTMILSDIYDEEDAAAATSKIIES 248

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH----RGGNHVESFR 696
           I  P  +  R + V  SIG   + +       +++NA++AMY AK     +      S  
Sbjct: 249 IGRPFLVDGRVLDVGVSIGIGIYPTDADNLESLVRNADVAMYQAKAEIGVQNTYRFFSTN 308

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++   ++   + ++L  A+   E  + Y P + +    I G+E+L++W HP  G +  + 
Sbjct: 309 MNDRATEDRELLKELSSALSQGEFVINYQPQVDVKTGHINGMESLLRWQHPTRGLLLPAA 368

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           FM + E   ++  +  ++L  + R   +WR+ A   P+ + +N++ + LL  +  E + A
Sbjct: 369 FMNVLESSPLVLEVGWWVLLNVCRQGQAWRETAG-TPLVLSVNLSPRQLLQEDFAEQVSA 427

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++++T   P  ++L  SE  +  + E +   + +L ++G+ L LD+FG   +   YL   
Sbjct: 428 VLAETGLPPHCLELDISEHALWEDEECAYKQVAKLNQLGVRLALDNFGNGRASFYYLRKF 487

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K +  L     ++     + R++I +A       +A  +     +  L  +  D 
Sbjct: 488 PFHAIKLDRRLTQAASASTDGADMARAVIQVAHVFRMKGLAGGVETAAQLDTLRNLSYDD 547

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q      PL  ++   LL+ 
Sbjct: 548 AQGYLYCHPLPTDAATALLER 568


>gi|332705807|ref|ZP_08425883.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332355599|gb|EGJ35063.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 602

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 215/464 (46%), Gaps = 33/464 (7%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR----------------- 565
           +K+++ +    F D LTG+PNR  FL  L           N +                 
Sbjct: 131 RKAIKRLQDLTFYDELTGLPNRTLFLYYLRQWFKPVQPTHNRKCLPMAYPIIPTLCWDEP 190

Query: 566 ----------PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                       V+ + + +Y  I   LG  + + +LV+  +R+ E +   DILAR+  N
Sbjct: 191 IVGNTQKDNVFAVLSLTLSRYGIIQYSLGDLLSEQLLVATAQRLQECIGDQDILARMGEN 250

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           +F I+L +  +  ++ + A  + + I++P +L  R ++    IG    T       ++L+
Sbjct: 251 KFAILLSNIQDLAQVKETAERIHQEISIPFDLNGRVVSSNCYIGIVLSTMGYEQPKDLLR 310

Query: 676 NAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A+ AMY+AK  G    E F  S      +R+ ++ DL  A++   L+L Y PI+ L   
Sbjct: 311 GADTAMYYAKLEGKGASEVFHPSMQKRAIERLQLETDLQQAIKYETLHLNYQPIVSLTTG 370

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM-P 792
           + +G EAL +W H     +S SEF+ +AEE  +I  +  ++L    + +  W+DQ     
Sbjct: 371 KTIGFEALARWQHRTRIKVSPSEFIPVAEETGLIIPLGEWILREACKQLSLWQDQFPDYS 430

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N++   L   +L + +  + +    S + +KL  +ESV++ N      +L +L+
Sbjct: 431 SLSISVNLSGIQLNQPQLIDQIDQICTTLELSGANLKLEITESVLVDNASVDSTILHKLK 490

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMAKNI 909
              I L +DDFGT  S  SYL  +P D +K   S ++       K    + +I+ +AK +
Sbjct: 491 DRNIKLCIDDFGTGYSSFSYLNDLPIDIIKIARSFISQGFTKNGKNFDTVEAIVNLAKKL 550

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +IA+ I  +     L  +GC+Y Q       L   ++  L+
Sbjct: 551 KIQVIAEGIETQEQKDILQDLGCEYGQGFLFGEALTAETVTNLM 594


>gi|311279563|ref|YP_003941794.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
 gi|308748758|gb|ADO48510.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
          Length = 720

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 222/438 (50%), Gaps = 13/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  +     A  D L+ +PNR++ +++L  +       D+   TV+ ID+D +K +ND+ 
Sbjct: 291 RGEKQAREIALTDWLSHLPNRRALIEQLERV---RKHGDDELKTVVFIDLDGFKDVNDIY 347

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD ++V +   +  L+    +LAR+ G+ F + L    +    A FA ++   +  
Sbjct: 348 GHDVGDALIVHIAHTLHALVPDDGMLARMGGDEFAMTLGGALSEQHAAAFAGSVLDFLNS 407

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
           P+ +  R I ++ASIG AS    + T+SE+ + A++AMYH+K  G   +  +    +S R
Sbjct: 408 PLRIRGRTIHISASIGIASGILRECTTSELFRRADIAMYHSKITGKGRITHYDAELNSAR 467

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++ I+ D+   +E +E  + Y PI+      +  +EAL++W     G +    F+ IA
Sbjct: 468 EHQLTIENDIRAGLERNEFDVWYQPIVDARSLTMTAVEALVRWPRRPAGELKPDAFIAIA 527

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I ++  F+L R   D+ +         + + +NI+     D E  + +  ++  +
Sbjct: 528 ESSGLIYSLGQFVLRRACSDMKNL------GDLKLSVNISPAQFRDPEFEDKVSQVLVTS 581

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +   R++L  +E+ V+ NPER+   +  L+ +G  + LDDFGT  S + YL    FDT+
Sbjct: 582 GFPAQRLQLEVTETYVLENPERAHSAISNLKMLGTDVALDDFGTGYSSIGYLRRFNFDTI 641

Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL     +     A++   I +A  +  T+IA+ +  E  +K L   GCD +Q   
Sbjct: 642 KIDKSLAGLVDDDDQAAALVSGTIRIASALGMTVIAEGVENEKQMKLLRLAGCDQLQGFL 701

Query: 940 VASPLGFNSILKLLKERF 957
            + P+   S+L++ ++R 
Sbjct: 702 FSEPMPLASLLQIRQQRQ 719


>gi|86356115|ref|YP_468007.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280217|gb|ABC89280.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 513

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/446 (25%), Positives = 212/446 (47%), Gaps = 13/446 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR   ++ ++  + ++ + +   A  D LT +PNR+         +   + ++     V 
Sbjct: 68  LRIRDLSREVDRRLQAEKHVDWIACHDTLTELPNRRFLESMCAQAMTDKSAEET--YAVF 125

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +KK+ND+LG   GD VL ++ +R+  L    + + RL G+ F +++    N   
Sbjct: 126 SIDLDGFKKVNDLLGHDHGDAVLKTVAQRLSSLF-SREHVFRLGGDEFVVLVRRVGNPD- 183

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +  +I  P       + + AS+G A +  +     +++++++ AMY AK +G 
Sbjct: 184 LVALGNRIVSAIGKPFTFNGVAVDLGASVGVALYPENGDELGQVIRHSDCAMYVAKKQGR 243

Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N V+ F  S       RV I+ DL  A+   E+   Y P++ L   +I+G EAL +W   
Sbjct: 244 NLVKPFVPSMQEELAKRVRIEGDLRAAIRQGEIVPYYQPLVDLKANKIIGFEALARWKSA 303

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               I  SEF+ +AEE  +I  +   +L R   D +SW ++     + +  N++   L D
Sbjct: 304 SGDFIPPSEFIPVAEEAGLIVELTDQLLRRACTDALSWPNE-----LVLSFNLSPIQLSD 358

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++        R++L  +ES ++ +   +R++L  L   G+ + LDDFGT  
Sbjct: 359 RLLGLRILKILGDVGLPAHRVELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGY 418

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L    FD +K + S +    + +K+  ++++II +   +   I A+ I  +  ++
Sbjct: 419 SSLSQLSNYRFDKIKIDRSFVASFETDDKQDIVIKAIIALGAGLGVMITAEGIEEQSQLQ 478

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L  +GCD  Q   +  P     I  
Sbjct: 479 RLQDLGCDIGQGYLLGRPAPIEEITA 504


>gi|89093888|ref|ZP_01166833.1| response regulator [Oceanospirillum sp. MED92]
 gi|89081774|gb|EAR61001.1| response regulator [Oceanospirillum sp. MED92]
          Length = 655

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/416 (25%), Positives = 210/416 (50%), Gaps = 10/416 (2%)

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           Q F +++T  L         +  +  +DI ++K  N+ LG    D +L  L + +    +
Sbjct: 233 QQFSEQITEQLSA-----GQQFALFYLDIARFKYFNEHLGYKEADLLLAHLAQILVSNTQ 287

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              +LA+++G  F +++    +     D    + +     I   +REI +   +GF    
Sbjct: 288 SDVLLAQMNGPEFAMLVPGVTSEESAQDHIRQIMEPFNQLIAFGQREIHLAFKVGFVLAP 347

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYL 722
                +  +++N+  AM   K +GGN  + F    S    D + ++ DL  A+E  E  +
Sbjct: 348 EDSDDADALIRNSMKAMLQGKQKGGNEPKRFSPAISRDSEDLIKLQSDLFRALERDEFSV 407

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           VY P + L+D  I+G EAL++W H + G +S ++F+ +AE   +I+ I  ++L   +   
Sbjct: 408 VYQPKVSLVDGSILGAEALLRWKHEQLGFVSPAQFIPMAEVSGLIEPIGEWVLSTASSQS 467

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W     +PP  + IN++ + L+++ L   +  +IS     PS+I+L  +E+ +M + E
Sbjct: 468 RFW-ALEGLPPFSVAINLSGRQLMEDCLPHKVAQIISHNELDPSQIELEVTETFLMQDIE 526

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LR 900
            S  +L  +R++G+ +++DDFGT  S L+YL  +P DT+K + S +   + +      ++
Sbjct: 527 HSIEMLNEIRELGVKISIDDFGTGYSSLNYLTKLPVDTLKIDRSFIKELSIREEVFRLVK 586

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +++ MA ++  T++A+ +  +  +  L  + CD +Q  + + P+  +    LL ++
Sbjct: 587 NMVGMAHDLGLTVVAEGVETKCQLDILKEIDCDEVQGFYYSPPVSADKFRNLLLKQ 642


>gi|150395655|ref|YP_001326122.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150027170|gb|ABR59287.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 449

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/447 (23%), Positives = 212/447 (47%), Gaps = 10/447 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              ++   + + E     +F D LTG+ N       +   L     +D    T+ + ++D
Sbjct: 2   TLRELGLDRPNREKPRSASFVDPLTGLGNAVHLEQTV-FTLAAERANDPAPFTIALANLD 60

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND+ G   GD +L  +  R+   +     + R   + F I+L             
Sbjct: 61  GFKPINDLFGPEAGDQILRQVAHRLKVCVPEGATVTRTKDDEFAIVLPLVFERRSAEKRG 120

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             ++++++ P  L +R + ++AS GFA +  +  T  +++K+A+ A+Y +K RG   +  
Sbjct: 121 QMLKEALSSPFALGDRNVRLSASFGFAVYPFAGDTFDDLVKSADTALYRSKRRGRGQITV 180

Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +     +  +    +++ L  A+    + + + PI+ L  +  +G EAL +W     G +
Sbjct: 181 YSQEIAQEMKHATQLEQALRNAIIAGGIDVHFQPIVDLRSDRPLGFEALARWCDADLGYV 240

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+  AEE   I  +   +L + AR  +SW ++     +F+  N++S  L+D     
Sbjct: 241 SPAVFVPFAEERGFIDRLAETLLRKAARAALSWPEE-----LFLSFNLSSVQLMDPTTSA 295

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A+I++    P R++L  +E+  M + E ++ ++   R  G+ ++LDDFGT  S L  
Sbjct: 296 RLLAIIAQVGLDPRRLELEITETAAMADAEIAQRIITEFRAAGVRVSLDDFGTGQSSLGR 355

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L     D VK + + ++G +  R +  I+++I+ M + +E  ++A+ I    +  +L  +
Sbjct: 356 LRDFSLDKVKIDRAFVSGISSDRASEHIVKAIVSMCEGLELAVVAEGIEHASEALKLKSL 415

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GC   Q      P   ++ ++ L E +
Sbjct: 416 GCGMGQGYFFGKPADADATMRYLSEFY 442


>gi|255656888|ref|ZP_05402297.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296452274|ref|ZP_06893979.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296877625|ref|ZP_06901655.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296258877|gb|EFH05767.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296431386|gb|EFH17203.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 739

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/434 (26%), Positives = 220/434 (50%), Gaps = 10/434 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K + + IL  A++D +T I N+  F    +  L       +L   ++  DI+ +K IND 
Sbjct: 313 KSNEKEILSLAYEDKVTHIGNQNKFYRECSKYLLD---KPSLNYIIVYFDINNFKMINDT 369

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L+++ + + E L   ++ ARLS + F I    +N   KI     ++R +I 
Sbjct: 370 FGYEFGDNLLITIAKALKEELTEGEVFARLSSDYFAIFCDYKNGRNKIIRKLDSIRNNIE 429

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFR 701
             +++      ++  +G       ++   + +  A +A   AK       + +  V +  
Sbjct: 430 SNLSI---VFEISLCVGIYFVEEDEVDIQKAVNKANMARSVAKGKNINYAIYNEDVRNKL 486

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S+  MI +D+ +A+  ++  + Y P   L++ E++G EALI+W+HP+ G IS + F+ IA
Sbjct: 487 SEESMILDDIKIALVKNQFEVYYQPKFSLVNGEMIGSEALIRWNHPEHGFISPAVFIPIA 546

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  F+ E++  D+  W+ Q     + + +N++  +L   ++ + +   I   
Sbjct: 547 EKSKLILKIGRFVFEKVCTDLSEWKKQGKKI-VPVSVNLSRVELYQPDIVKFINKTIQMY 605

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   I++  +E+V +      + +L  LRK G S+++DDFGT  S +S L  +P D +
Sbjct: 606 NLSSDLIEIEITETVAINELNILKNVLNELRKYGFSISMDDFGTGYSSISCLRDMPIDIL 665

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G    E+   I +SI+ +AK+++  +I + +  +   + + + GCD +Q  +
Sbjct: 666 KLDKSFLDGIEHDERSRNIAKSIVSLAKSLDLVVIIEGVESKEQAELMKQFGCDLVQGFY 725

Query: 940 VASPLGFNSILKLL 953
            A P+   + L LL
Sbjct: 726 FARPMPAKNFLDLL 739


>gi|194365004|ref|YP_002027614.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347808|gb|ACF50931.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stenotrophomonas maltophilia R551-3]
          Length = 807

 Score =  403 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/607 (17%), Positives = 215/607 (35%), Gaps = 23/607 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
               +        +++ A +    L V+ I    +      G     +     R   A  
Sbjct: 196 AQAFSQALLRMATMVRVATLMVGGLSVLAISLMAVALARRVGK---DLTEHESRFRAAFY 252

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY---IHINDRDNFRTILD 469
            +   +   D     +     +A IL      +       L     + I+          
Sbjct: 253 QANVGMLKLDTDGKVMEANQAMADILDYRRDVLLQMSLGDLLMEGELVIDGVGR------ 306

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             + + R     E R    D    W       + ++ G +     I  D+++       I
Sbjct: 307 --IDWDRQLRPSELRFCRRDGSLVWGRWSGTGVRSAGGGLS-VFAIIEDVSQNHALAREI 363

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
             +A  D LTG+ NR+     L   L    ++     ++  I++D +K +ND  G A GD
Sbjct: 364 EHHASHDPLTGLINRREIERLLERSLLQVRSEGGTH-SLCYINLDHFKLVNDSFGHAAGD 422

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L S    +   ++  D + RL  + F + L               +R        + E
Sbjct: 423 QMLRSFADYLVAAVRDGDWVGRLGADEFAVFLAHAGQDEAKRVLQRVIRNLGQATFPISE 482

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
               ++ SIG     +    ++ ++  A+ A Y AK  G N V  F  +    +    + 
Sbjct: 483 GSPQLSCSIGVVEVNAEAPDANWLMSAADSACYAAKQAGRNRVHCFNENRLALEERRQEA 542

Query: 710 DLCL----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +       A+  + + L    I R+ D   +  E L++            +FM   E   
Sbjct: 543 ERLQGVSLAMAENRMLLYAQRIARVGDPSYLHYEVLVRMRGTDGSLHLPGQFMPAVERYG 602

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           M  A++  +L  + R +           +   +N++++ + +      +  L+ +     
Sbjct: 603 MAVALDRHVLGLLFRHLQVCPAHVRQLGL-CNVNVSAQSIAEPGFLAFVCDLLERNRALA 661

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S++    +E+  + N  ++R  +  ++  G  + LDDFG+  S   YL  +P D +K +G
Sbjct: 662 SKLCFEITETAAISNLSQARAFIDAVKARGCRMALDDFGSGLSSFGYLRQLPADILKIDG 721

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +          A +R+I  + + ++  ++A+ +        LTR+G   +Q   +  P
Sbjct: 722 TFVRDMDTDPISHATVRAISELGRELQMEVVAEWVETAEVAAALTRLGVQGLQGYAIERP 781

Query: 944 LGFNSIL 950
                + 
Sbjct: 782 QPLERMT 788


>gi|239501651|ref|ZP_04660961.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB900]
          Length = 697

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/579 (21%), Positives = 245/579 (42%), Gaps = 13/579 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F     +       Q +  D + Q+  +  S D +   +               LG+   
Sbjct: 113 FISFLDIDQDIQEQQSLRKDIDIQNQMLDISVDCIKVLNTDGTVSHMNKSGCLALGIPVD 172

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +R WL  +  + R   R  L   +  +  R      +   D ++      + P+ 
Sbjct: 173 EKKFGMR-WLDLLPPHIRKRGRVALKKALQGKVARFAGMSCLPNQDPEY--WDNMLTPIQ 229

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++NG+I++ + ++ ++T+Q  +   +   + +D LT + NR+SF  +L   L  S  +  
Sbjct: 230 HTNGEIIQILCVSRNVTQQYLTENRLRDISERDELTRLFNRRSFKLQLKRTLAYS-RETQ 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILI 622
               +++ID+D +K IND +G + GD +L  L++R  + +      +ARL G+ F +I+ 
Sbjct: 289 TSVGLLLIDLDHFKHINDTIGHSAGDHLLKILSKRFNQCVDPERCSVARLGGDEFAVIVS 348

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N   + + A  + + +  PI      +    SIG A +    +  S +L  A++A++
Sbjct: 349 HLENENDVRELAEVLLQQLNQPITYAGNVLNGGMSIGCAIYPQDAVDQSSLLSCADMALH 408

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLMDEEIVGLE 739
             K RG   +  +  S  +     I   L      + +  +   Y P + L    +VG E
Sbjct: 409 DLKARGRGGIRMYNPSMMQLTE-AIASQLNIARQLIRHHTIQPYYQPKVDLKTHAVVGFE 467

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W          S+     ++  +   I   M +++  DI  W       P+ + +N
Sbjct: 468 ALLRWHTTSAQRGLPSQIAEAFKDYDLASKIGEIMQQQVLHDIAKWIK-LGFVPLPVSLN 526

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISL 858
            A  + L +   E +   I++       I++  +E ++     E     L +L++ G+ +
Sbjct: 527 AAPVEFLRDNYAERLLKKINQLEIPTHLIEIEVTEHMLGDRGSEYVIRALNKLKQHGVRI 586

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+++   P D +K + S +          AI+++I  +A N+   +IA+
Sbjct: 587 ALDDFGTGFSSLTHIRDYPIDCLKVDCSFIQKMQHDPSIYAIVQAIGLLAPNLSLGLIAE 646

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I      + L + G +  Q     S +  N ++ +LK+
Sbjct: 647 GIETPEQEELLLQFGYNIGQGFLFESAIDANQVISILKQ 685



 Score = 44.9 bits (105), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 9/132 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           ++   V       W  D     +    +          +     + WL +++  D +  +
Sbjct: 9   QKHFIVEQFPLPTWVSDEKGLILYCNTECTK---YWRDTSPPLFQQWLDFVYPADLEEVK 65

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-----NSNGDILRYIGIANDIT 520
                 +   R R++++ R+    + + W  I I+          N   + ++ I  DI 
Sbjct: 66  NKWLDAIR-LRSRIEFKCRLLHKTHYYRWCKISIQLSKYHESSQENEWFISFLDIDQDIQ 124

Query: 521 EQKKSLEGILCN 532
           EQ+   + I   
Sbjct: 125 EQQSLRKDIDIQ 136


>gi|222528601|ref|YP_002572483.1| PAS/PAC sensor-domain containing diguanylate
           cyclase/phosphodiesterase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455448|gb|ACM59710.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 617

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/587 (20%), Positives = 255/587 (43%), Gaps = 59/587 (10%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGY 474
           +V  WD     +    +   +LG +   + G    WL  + I+D++      + +  +  
Sbjct: 35  VVVVWDEEGIILEYKENGEKLLGYSPNQIEGKK--WLDVL-IDDKEKEEMEWVYNKLISG 91

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG--DILRYIGIANDITEQ---------- 522
              +  Y   +R  +      +     + ++     I   IG + D  E+          
Sbjct: 92  EVFKY-YVNPIRDVNGVKKTFLWYNSKIESAQNNKRIFLSIGFSLDAIERLNRKIHRYEK 150

Query: 523 ------------------------------KKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
                                         K     +   AF D LT +PN+ S +  L 
Sbjct: 151 DLYKMSAESENLRFKISKQDLILKQKDEMIKDYKTKVEFLAFYDELTKLPNKNSLMRWLN 210

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +  +   DN+   ++ +++   +K+N + G  + D++++ +++RI E+L   + + ++
Sbjct: 211 LRISQA---DNMSTYLIFLEVRNLEKLNVMYGYDLVDELIIHISKRIEEILGKENKIFKI 267

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             +RF II      +  +++F   + K + +  N+    I V+ ++G  +      +++ 
Sbjct: 268 GSDRFAII----GKTDNVSEFIENLLKKLLVTYNINGNLIKVSYNVGATAIEDVNDSTAN 323

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +++  +LA+  AK +G N  E F+ S          I+ +L   ++ +E  + Y P I L
Sbjct: 324 VIRKCDLALIRAKEKGLNKYEIFKPSLEVQTLKEGIIERELRNGLDLNEFVVFYQPTINL 383

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            + +I G EAL++W + K   +S  EF+ +AE+  +I  +   +LE+  + +  W  +  
Sbjct: 384 KNNQICGFEALLRWHYLKSVFVSPLEFIPVAEKCGLIVELGNIVLEQSLK-VAKWLSRYI 442

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I INI+ +   D E       ++     +  +++   +E + + N + +  ++ +
Sbjct: 443 TDEFIISINISPQQFSDREFIRSTIQILENEGLANVKLQFEITEKLAIENIDYAIEVINQ 502

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNI 909
           LRK  I+  LDDFG   S L+YL  +P   VK + S +    +     I+ +II + K +
Sbjct: 503 LRKYNITFALDDFGVDYSSLNYLRRLPIQAVKIDKSFVQDIEKDETYFIVETIIKLCKKL 562

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++A+ +  E   + +  +GCDY+Q   ++ PLG   ++K +++ 
Sbjct: 563 GLKVVAEGVETEEHYRAVKELGCDYVQGYFISRPLGVEELIKFIEKY 609


>gi|167747221|ref|ZP_02419348.1| hypothetical protein ANACAC_01935 [Anaerostipes caccae DSM 14662]
 gi|167653199|gb|EDR97328.1| hypothetical protein ANACAC_01935 [Anaerostipes caccae DSM 14662]
          Length = 1153

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/526 (22%), Positives = 222/526 (42%), Gaps = 30/526 (5%)

Query: 453 LPYIHINDRDNFRTI--LDSFVGY-----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +H +D  ++     LD+ +           L  +FR    D  + W+      +  S
Sbjct: 81  RKLVHPDDIADYLDFWNLDTIMERLSSASPSPFLLGQFRKAKKDGSYCWVAQTAVAVRQS 140

Query: 506 NGDILRYIGIANDITEQKK-----SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             D    +    DI EQK+          L +   D LTG+  +  F+ +   +L  S T
Sbjct: 141 RDDDQIIMCFVQDIHEQKEKSLEIQEHKPLPSTSIDPLTGLYRKNIFVQKAVRLLQTSGT 200

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGI 619
            ++    +MVIDI+ +K  N+  G   GD  L+ +   + +  +  + +A  +  + F I
Sbjct: 201 HEHC---LMVIDIEHFKLFNEWYGQEAGDQFLIDIGLHLKKAQEEHEGIAGYMGDDDFCI 257

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           IL ++           ++++ I   I   +  +    + G        +    M   A +
Sbjct: 258 ILPNDQ------AVISSLQQKIMGYIRHYQGNVGFLPAFGLYMIEDCGVAIQTMYDRAAI 311

Query: 680 AMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AM   K      + +    +     +  ++  ++  A+E  E      P   +   +I+G
Sbjct: 312 AMSSVKGNYTKRSCIYDSGMMQKMKNNHILLSEVQHALEQEEFTFYAQPKCNMATGKIIG 371

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LE+L++W+HPK G IS  EF+ + E    I  ++L++ +R+ R +  W D+ +   I I 
Sbjct: 372 LESLVRWNHPKRGMISPGEFIPLLESNGFITNLDLYVWDRVCRSVRDWIDRGHR-AIPIS 430

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++  D+   ++ +  + L  K    P  I++  +ES      E     + +LR  G +
Sbjct: 431 VNVSRVDVYSLDIVQTFKDLTEKYRLEPHLIEIEITESAYTEEYELINDTIEKLRASGFT 490

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTI 913
           + +DDFG+  S L+ L  +  D +K +   +    E+       IL +II MA+ +   I
Sbjct: 491 VLMDDFGSGYSSLNMLKDVNVDVLKIDMKFL-EMDEQSAEKGYGILEAIISMARFMGMKI 549

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           IA+ +  +  +  L  MGC Y Q  +   P+  +    LL  +  L
Sbjct: 550 IAEGVETKEQMDYLLNMGCTYGQGYYFYHPMPISVFEPLLANKNNL 595



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 426  DRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D +  +     I G     +     N ++  +H +DR      ++  +  +   + +E+R
Sbjct: 935  DFLYISDRFLQIFGFTRQEIKDRFGNKFMNMVHPDDRHLVSAGVEE-LERQDVIVNFEYR 993

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            + + +  + W+I + R      G      GI  DITE       +      
Sbjct: 994  MLSKNG-YIWVIDQSR-YMEYQGR-QFLQGIITDITETVNLRNRMSHLFVH 1041



 Score = 61.1 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 103/349 (29%), Gaps = 50/349 (14%)

Query: 429  TTTPDIATILGL-ASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                ++  +LG  +       I    +  IH +DR+     +     Y        +R+ 
Sbjct: 800  FANHEMVRLLGYGSFEEFEQAIDGRVINTIHPDDREQVAKDI-GPEYYAGLEYTTTYRMP 858

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              D  + W + + + +   +G +   +    DI+E     +             +  R +
Sbjct: 859  KKDGSWFWSLDKGKVIEAEDGRLA-IVSACTDISEPMSVQQQ------------LAERNA 905

Query: 547  FLDRLTTILDLSATD---------DNLRPTVMVIDIDKY--------KKINDVLG----- 584
             L R +  L     D         D      + I  D++        ++I D  G     
Sbjct: 906  ILMRKSQELAFLNNDMPGGYHRCEDTPDYDFLYIS-DRFLQIFGFTRQEIKDRFGNKFMN 964

Query: 585  --IAVGDDVLVSLTRRIGELLKFPDILAR-LSGNRFGIIL-----ISENNSLKIADFAIA 636
                    ++ +    +       +   R LS N +  ++     +       +      
Sbjct: 965  MVHPDDRHLVSAGVEELERQDVIVNFEYRMLSKNGYIWVIDQSRYMEYQGRQFLQGIITD 1024

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK--NAELAMYHAKHRGGNHVES 694
            + +++ +   +    + +  SI        +I    + +   AE                
Sbjct: 1025 ITETVNLRNRMSHLFVHLPESIFLLRIREGRIEFRLLSEGFFAEYGYTAESLDQYVRTRF 1084

Query: 695  FRVSSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALI 742
            +  +    +   I++DL  A++ + E     +      +   + LEA  
Sbjct: 1085 YNDTVHPENLRQIRQDLLKAMKKNSEFKASVNIHFPQKESFAISLEASP 1133



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +L      G        +   + +P L     L +  I    ++ +      ++ I S+ 
Sbjct: 563 LLNMGCTYGQGYYFYHPMPISVFEPLLANKNNLDLRGIKARQLERLHIKELLNENIVSEA 622

Query: 405 ERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                 +      V  + I       V        + G  +  +    R  L  I+  D 
Sbjct: 623 -----MLNNIMGGVAFYKIHGREIELVRCNEQYFKVTGSNAVDLEEQRRIILENIYEEDH 677

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                + DS         + + R    D    W+ + +  +    GD L Y G  +D+TE
Sbjct: 678 QTVFDLFDSADRSILNGAEADVRRLKDDGSTIWIHMHVYLLKKQGGDKLYY-GSISDVTE 736

Query: 522 QKKSLEG 528
           QK+  + 
Sbjct: 737 QKQREQR 743


>gi|302865801|ref|YP_003834438.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315502347|ref|YP_004081234.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
 gi|302568660|gb|ADL44862.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315408966|gb|ADU07083.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
          Length = 811

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 106/443 (23%), Positives = 202/443 (45%), Gaps = 22/443 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D LTG+ NR+  L  L       + +  +   ++ +D+D +K +ND+ 
Sbjct: 301 EREAHFRELAHTDPLTGLANRRGLLRALHR-----SAEAGVPCVLLGLDLDGFKNVNDMR 355

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL+ + RR+   L+  D+ ARL G+ F +++    +   +   A  +   +  
Sbjct: 356 GHDVGDAVLIEVGRRLRGNLRPGDLAARLGGDEFAVLMHGSADPGPV---ADRLLGVLGR 412

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P    +  + ++ SIG A     +     +L+NA+LA+ +AK RG N +E +  +  +  
Sbjct: 413 PYEQGDGPVFLSVSIGVA-AGHGEQDVELLLRNADLALRYAKQRGKNRIERYDATYDQLL 471

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L  A+E  EL LV+ P+  L     VG EAL++W HP+ GN+   EF+ +A
Sbjct: 472 SRRTRMEHELRGAIERDELRLVFQPVASLPSVRPVGAEALLRWRHPELGNVRPDEFIPLA 531

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  MI  +  ++L +    +  W    +   +++ +N++ ++L   E    +   +   
Sbjct: 532 EECGMIAKLGAWVLHQACYQLSRWLADGHD--VWVSVNVSPRELHAPEYVVQVADALRAH 589

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R+ L  +E  V  + +     L  LR  G+ + LDDFG   S L  L  +P D +
Sbjct: 590 HVPPQRLVLEVTEHAVATDLDELIRRLTALRLTGVRIALDDFGAGYSSLGQLRRLPIDIL 649

Query: 882 KFNGSLMTGSTEKRIA---------ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           K + SL+      R           ++  ++ +   +   +IA+ +    ++  +   GC
Sbjct: 650 KIDHSLVAEHEPVRPVGRDGPAFAPMVDIVMRLGHQLGLEVIAEGVTNPTELAAVVAAGC 709

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            + Q +     +    +  +L+ 
Sbjct: 710 RFGQGALFGWGVPAEHLEAMLEA 732


>gi|322433134|ref|YP_004210383.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321165361|gb|ADW71065.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 862

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 213/439 (48%), Gaps = 6/439 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E+ +  + +  +A+ DNLTG+PNR    +RL + +       +    ++ ID+DK+K+
Sbjct: 395 VLERYRLQQELRRHAYHDNLTGLPNRLLGEERLASAIRRGRRAGSP-VAILWIDLDKFKQ 453

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            NDV G   GD++L  +  R+    +  D +AR+ G+ F  +L    +       A  + 
Sbjct: 454 TNDVHGHVAGDNILKEIAARLSRRFRDSDTIARMGGDEFMAVLEDITDRSAARKIAEQLI 513

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRV 697
             +A+PI   +  +   ASIG + +     ++  + +NA++AMY AK    G    S  +
Sbjct: 514 AELALPIPFGDLMLVTEASIGISLFPEDGDSADLLQRNADMAMYEAKFGHHGVRAFSPAL 573

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S  ++R  +++ +  A+++    L Y P     D  +   EAL+++ HP  G +S +  
Sbjct: 574 DSILTERRDLEKAMIHALDHGGFALHYQPQYA-NDGRLSAFEALLRFPHPVMGMVSPARL 632

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  MI A+  ++L       + W+       + I +NI++      +    +  +
Sbjct: 633 IPIAEESQMIVALGTWVLREACNQSMRWQKAGLPEVL-IAVNISAMQFARQDFAHHVAEI 691

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T   P  ++L  +ESV++ +   S   L RL+++G+S+ +DDFGT  S L++L  +P
Sbjct: 692 LEETGLHPELLELELTESVMVKDFAESTRQLERLKRLGVSIAVDDFGTGYSSLNHLHRLP 751

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +   +E      I+ SII MA  +   ++A+ +     +  L    C+ +
Sbjct: 752 IDKLKIDRSFIQALSEPNGTLPIVESIIAMAHRMGMCVVAEGVETPRQMATLREKSCNIL 811

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + P+  +     L 
Sbjct: 812 QGYLFSPPVEADRAALFLA 830


>gi|218508755|ref|ZP_03506633.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 437

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 212/422 (50%), Gaps = 10/422 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A+ D LTG+ NR    +++   +      D    T+ + ++D +K IND+ G 
Sbjct: 14  HSELQAMAYTDPLTGLGNRNRMREKVLQ-ISAERASDPAPFTIGIANLDSFKPINDLFGS 72

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD++L  +  R+   +    ++ R  G+ F  +L           F   +R+ ++ P 
Sbjct: 73  SAGDEILCQVAHRLKACIPDGAMVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPY 132

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           +L +R + ++AS GFA +  +     E+LK+AE A+Y +K RG   +  +     +  + 
Sbjct: 133 DLGDRNVRLSASFGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKR 192

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S   F+ +AEE
Sbjct: 193 ATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPGVFVPLAEE 252

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I A++  +L + A   +SW  +     +F+  N++S  L+D      + +++ +  +
Sbjct: 253 RGFIDALSETLLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSGSILSILGRVGF 307

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R++L  +E+ VMG+ + +  ++  LR  G+ ++LDDFGT  S L  L    FD +K 
Sbjct: 308 DPHRLELEITETAVMGSADTAHRIIADLRAAGVRISLDDFGTGQSSLGRLRDFIFDKIKI 367

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + ++     R +  I+++I+ M   +E  ++A+ I    +  +L  +GC   Q  H  
Sbjct: 368 DRAFVSRINSDRASEHIIKAILAMCDGLELEVVAEGIEDYAEAVKLRTLGCGMGQGYHFG 427

Query: 942 SP 943
            P
Sbjct: 428 RP 429


>gi|27366986|ref|NP_762513.1| putative signal transduction protein [Vibrio vulnificus CMCP6]
 gi|27358554|gb|AAO07503.1|AE016810_6 Predicted signal transduction protein [Vibrio vulnificus CMCP6]
          Length = 797

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 118/472 (25%), Positives = 224/472 (47%), Gaps = 14/472 (2%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           AD  +    I      +  G + R      +    ++  + I   A+ D LT +PNR+ F
Sbjct: 320 ADGNY-TATIEGTQRPDEIGQLTRGFDQMRE--RLQEQKQTITQLAYFDTLTHLPNREHF 376

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-P 606
              L   L   +       +V+ I++D++K INDVLG  VGD VL  + +R+    +   
Sbjct: 377 RQHLKQELAHPSL---KSISVITINLDRFKHINDVLGYHVGDAVLQEMAQRLTLTSESLT 433

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
              AR+SG+ F   +     S ++AD    +++ + +P  + +  I ++ SIG A+W S 
Sbjct: 434 LFAARISGDEFVGEIK--TGSDELADSVTRIKQRLDIPFYVNDTPIDISVSIGVATWPSD 491

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-RVMIKEDLCLAVENSELYLVYH 725
                 +L  +++AMY AK +    V             + +  +L  A+  +EL +   
Sbjct: 492 GGDVDSLLNASQIAMYSAKRKKEQVVFYDSALVTAIPENLSLLSELRRALLQNELRVYLQ 551

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +    + +   EALI+W HP+ G ++   F+  AE+   ++ +  +M++++ +     
Sbjct: 552 PKVMATTKVVSSAEALIRWQHPERGLLAPFFFVPFAEQTGYVRELTRWMIQQVIQHWREL 611

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           +  +    + I +N+++ DL++ +L + +Q  +S+     S + L  +ES +M +PE S 
Sbjct: 612 QPLSGQ--LTISVNLSTWDLINPQLLDDLQHWLSEYHVPASGLCLEITESAIMEDPETSE 669

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
           L L +L ++G  L++DDFGT  S L YL  +P + +K + S +           I+ S I
Sbjct: 670 LTLLQLSQMGFHLSIDDFGTGYSSLGYLQRLPVNELKVDKSFVLNMLENPNDKVIVSSTI 729

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +A ++   ++A+ +        L  +GCD IQ   V+ P+     +   +E
Sbjct: 730 HLAHSLGLQVVAEGVESYDLFTSLRELGCDEIQGYCVSKPIALEEFIAWREE 781


>gi|258513411|ref|YP_003189633.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777116|gb|ACV61010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 738

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/554 (21%), Positives = 229/554 (41%), Gaps = 26/554 (4%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             R  L    + DI+         +          G  S  +     N         R  
Sbjct: 188 LRRYQLLSENTRDIILFVRSDGQIIDANLAALQAYGYNSEDILT--LNIQNIREKATRTL 245

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L   V      + +E   +  D     + +  +        I   + I  DI+E+K
Sbjct: 246 INYQLREAVDKG---IVFETIHQRKDGSTFPVEVSSKGALLEGEQI--VVSIIRDISERK 300

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    I   A  D LT IPNR    + L   +  +         ++++D+D +K +ND  
Sbjct: 301 KFELQIKHLATHDYLTNIPNRYYLEESLKRYVAKAKR--GTTSALLLLDLDNFKLVNDTK 358

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L+  T+ +   L+  D+L RL G+ F ++L    +  +  + A  +R  I  
Sbjct: 359 GHVAGDELLIIFTKILKANLREEDLLTRLGGDEFAVLLEGI-SINEATEIAEKLRAVIDN 417

Query: 644 P---INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES----FR 696
               ++L+     +T SIG +      +   ++L  A+ A+Y AK  G N V +      
Sbjct: 418 QTIALSLINVRFNLTVSIGLSMV-DGSMDPIQILSQADRALYIAKESGRNRVITIKGVED 476

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                +    +   +  A+ ++   +V+ PI+++   +I+  EAL++        IS   
Sbjct: 477 TEEKLTMTNQLISLIKKALRDNLFEIVFQPIVKVAHRDIIHFEALLRLKDDHGHLISPGH 536

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   M+  I+L++L+ +   +           I I INI+   L +  L    ++
Sbjct: 537 FIPVAERFGMMAQIDLWVLQSVIDTLRM------HEGISIFINISGTSLSNERLLNQFES 590

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  +   PSR+    +E+    +  ++   + +L+++G    +DDFG   S  SYL  +
Sbjct: 591 IVLNSSVEPSRLGFEITETAAARDMIKAEQWIRKLKRLGCKFAIDDFGIGFSSFSYLRLL 650

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K +GS +    ++   +A+++++  +A  ++   IA+ +  E  ++ L  +  DY
Sbjct: 651 PVDYLKIDGSFIYNIDQETTNLALVKAMNTVAHTLDKKTIAEFVENENILQILNELDVDY 710

Query: 935 IQDSHVASPLGFNS 948
            Q   +  P     
Sbjct: 711 AQGYFIGIPAQIEQ 724



 Score = 46.1 bits (108), Expect = 0.032,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 56/185 (30%), Gaps = 14/185 (7%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           +         + +   L  +  Q  +   ++ + +   + +I H L    +   + S   
Sbjct: 13  IAIFLLFIQGIILIGYLYFNNQQFNIKTAIIFLSVASSWPIIYHYLYEKDYKSYLLSIQN 72

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL---PYIHINDRD 462
           R       + DIV+  D   + +          G +           L        +D  
Sbjct: 73  RY--LTKYANDIVFLLDSNFNFIEINDKAIKTYGYSHEEFFKMKFYNLCDQEKYSEDD-- 128

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              T +DS          YE   +  D     + I  R +    G    Y  I  +ITE+
Sbjct: 129 EVYTKIDSH-----DGYIYETIHKKKDGSTFPVEISSRTII--AGGKKHYHSIIRNITER 181

Query: 523 KKSLE 527
           KK+  
Sbjct: 182 KKTEA 186


>gi|221128037|ref|XP_002155199.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 388

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 184/386 (47%), Gaps = 6/386 (1%)

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D +K IND +G A GD+ L  +  R+   ++  D++ R SG+ F + L+   +  
Sbjct: 1   MFVDLDNFKFINDSVGHAAGDEFLQQIASRLRSAVRETDVVMRQSGDEFLVGLLDVPDIQ 60

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             +  A  + + +     +   E++ + SIG A +         +L++A+LAMY AK  G
Sbjct: 61  AASKAANEVLEHLGGVYRVQGSELSSSCSIGLAVYPRDGHDFDTLLRHADLAMYQAKQAG 120

Query: 689 GNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F V           +  +L  A+   E  L Y P++ + D  ++G EALI+W H
Sbjct: 121 RNTFRFFDVMMQDDLSANPRLVAELQTALVRGEFVLHYQPVVDMQDHRLLGAEALIRWQH 180

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +   EF+  AE   +I  I  ++LE   R  + W+      P+ + +NI+   L 
Sbjct: 181 PVRGLLGPVEFIPAAERSGLIVDIGHWVLEEACRQAVKWQR--PGQPLVVAVNISPVQLH 238

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L   ++  ++ +    + ++L  +ESV+MG+       +  L+ +G+S+ +DDFGT 
Sbjct: 239 RGDLESAVRMALANSDLPGACLELEITESVLMGDATTLADTIRHLKALGVSIAVDDFGTG 298

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L YL     D +K + S +       ++ AI+ +II M K+++    A+ +  +   
Sbjct: 299 YSNLGYLQRFAADKIKIDQSFVRAMLAEPEQQAIVTAIIQMGKSLKLLPHAEGVESDDAR 358

Query: 925 KELTRMGCDYIQDSHVASPLGFNSIL 950
             L  MGC   Q    A PL  +   
Sbjct: 359 ALLLEMGCRTGQGYWFARPLAADMFA 384


>gi|330466213|ref|YP_004403956.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328809184|gb|AEB43356.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 775

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/732 (18%), Positives = 267/732 (36%), Gaps = 71/732 (9%)

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L        +  +  +    ++     + +      S A        +    F       
Sbjct: 36  LFTGAAAVSLVTLLLATAGALSASEHWA-HEQPQRTSWASAVAVGTAVSGLLFCAGLLRM 94

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL- 391
                 +   A + +    +G  +     +        L     +    I    I   L 
Sbjct: 95  PGVAGSVGAAARLALDSVVVGAALWFVGWVLLSEPTRVLGDATPMACPAILLASISAALC 154

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWD---WDIVRDRVTTTPDIATILGLASGSMHGP 448
           +       + +   R+ LAVLG+G  V       +        P + ++      S+   
Sbjct: 155 SGLAIILVLRARPPRRGLAVLGAGISVATSGGLGVATGLCQVGPAMTSM------SLVVL 208

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------- 501
               L              +        G+L  +  V   D ++ ++ +           
Sbjct: 209 AVGLL-----------TAAVAMSRIDPAGQLTTD--VIRHDGEYAFVPMAAMAGSAMYHL 255

Query: 502 ----MSNSNGDILRYIGIANDITEQK--------------KSLEGILCNAFQDNLTGIPN 543
                 ++ G +   +     +  Q               +        A  D LTG+ N
Sbjct: 256 LQDGRFDALGIVAGSVEGFALVARQHLTLHQVRAYARRLAEREAHFRQLAHTDALTGLAN 315

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+  L  L           +    ++ +D+D +K +ND+ G  VGD VLV + +R+   L
Sbjct: 316 RRGLLRAL-----HGCAAADTPCMLLSLDLDGFKNVNDMRGHDVGDAVLVEVGQRLRANL 370

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +  D+ ARL G+ F +++       +    A  + K +       E  +  + SIG A+W
Sbjct: 371 RPGDLAARLGGDEFAVLMHG--GPAEAGAVAERLLKVLGGAYPQPEGPVFCSVSIGLATW 428

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELY 721
            +       +L++A+LA+ +AK RG N +E +  +  R  R    ++ +L  A+  +EL 
Sbjct: 429 -ADTPDVELLLRHADLALRYAKQRGKNRIERYDGAYDRLLRRRTTLEHELRGAIGRNELR 487

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           LV+ P+  L     VG EAL++W HP+ GN+   EF+ +AEE  +I  +  ++L    R 
Sbjct: 488 LVFQPVASLPSVRPVGAEALLRWHHPELGNVRPDEFIPLAEESGIIAELGAWVLHEACRQ 547

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W  + +   +++ +N++ ++L        +   +      P R+ L  +E  V  + 
Sbjct: 548 LSRWLAEGHD--VWVSVNVSPRELHAPAYVAQVTEALRTHHVPPQRLVLEVTEHAVATDL 605

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA---- 897
           +     L  LR+ G+ + LDDFG   S L  L  +P D +K +  L+      R      
Sbjct: 606 DELIRRLTALRRTGVRIALDDFGAGYSSLGQLRRLPIDILKIDHGLVAEHEPVRPVGRDG 665

Query: 898 -----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                ++  ++ +       +IA+ +    ++  +   GC + Q +     +    +  +
Sbjct: 666 PAFAPMVDIVMRLGHQFGLEVIAEGVTTPTELAAVVAAGCRFGQGALFGWGVPAEHLEAM 725

Query: 953 LKER-FPLVKNT 963
           L+    P  +  
Sbjct: 726 LEAATSPGARPA 737


>gi|188577706|ref|YP_001914635.1| Putative signal protein with HAMP, GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522158|gb|ACD60103.1| Putative signal protein with HAMP, GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 785

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 216/442 (48%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  +++ +         V+++D++++K++ND LG 
Sbjct: 342 EQHILHQARHDALTGLPNRIWLLERLKEVVEQTVAAGGT-AAVLILDLERFKELNDSLGH 400

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ +++ +   A  +   +  P+
Sbjct: 401 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAVSVQQDAQRLLLQLRRPL 459

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSD 703
            L +  I + ASIG A           +L+ A++A              +R         
Sbjct: 460 VLPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQVGTTSAIGASVYRLGQDEQHLR 519

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  A+  +EL L + P I L  +++  +E L++W HP  G I   EF+ +AE 
Sbjct: 520 RLRLTGDLRQAIGANELTLRFQPKICLRSDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 579

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L+   R    WR+Q  +    + IN+++ DL D  L + ++  +     
Sbjct: 580 AGVIHPLTRFVLDEALRCQAQWREQGLVLG--MAINLSALDLSDPGLPDFVRGRLEHHAV 637

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K 
Sbjct: 638 PAQSVTLELTESALMRDVEFALHMLHQLRGVGVRLSIDDFGTGYSSLAQLKRMPVNELKI 697

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 698 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENATALALLRGYGCDMVQGYLYS 757

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 758 PPLEEAPLVAWCMRQLGMTSAA 779


>gi|58582869|ref|YP_201885.1| phosphodiesterase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624731|ref|YP_452103.1| phosphodiesterase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58427463|gb|AAW76500.1| phosphodiesterase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368671|dbj|BAE69829.1| phosphodiesterase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 788

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 216/442 (48%), Gaps = 8/442 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + IL  A  D LTG+PNR   L+RL  +++ +         V+++D++++K++ND LG 
Sbjct: 345 EQHILHQARHDALTGLPNRIWLLERLKEVVEQTVAAGGT-AAVLILDLERFKELNDSLGH 403

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D VLV   RR+ E+++ P+++ RL  + F ++++++ +++ +   A  +   +  P+
Sbjct: 404 DFADQVLVEAGRRLVEVVQEPNLVGRLGSDEF-MVVVAQADAVSVQQDAQRLLLQLRRPL 462

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSD 703
            L +  I + ASIG A           +L+ A++A              +R         
Sbjct: 463 VLPQARIQLEASIGIALIPEHGADPDTLLRRADIARRQVGTTSAIGASVYRLGQDEQHLR 522

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  A+  +EL L + P I L  +++  +E L++W HP  G I   EF+ +AE 
Sbjct: 523 RLRLTGDLRQAIGANELTLRFQPKICLRSDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEH 582

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+L+   R    WR+Q  +    + IN+++ DL D  L + ++  +     
Sbjct: 583 AGVIHPLTRFVLDEALRCQAQWREQGLVLG--MAINLSALDLSDPGLPDFVRGRLEHHAV 640

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES +M + E +  +L +LR +G+ L++DDFGT  S L+ L  +P + +K 
Sbjct: 641 PAQSVTLELTESALMRDVEFALHMLHQLRGVGVRLSIDDFGTGYSSLAQLKRMPVNELKI 700

Query: 884 NGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    E      I+RS I +  N+  ++IA+ +     +  L   GCD +Q    +
Sbjct: 701 DKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVENATALALLRGYGCDMVQGYLYS 760

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    ++     +  +    
Sbjct: 761 PPLEEAPLVAWCMRQLGMTSAA 782


>gi|317470965|ref|ZP_07930344.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901616|gb|EFV23551.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1210

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 117/526 (22%), Positives = 224/526 (42%), Gaps = 30/526 (5%)

Query: 453 LPYIHINDRDNFRTI--LDSFVGY-----RRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              +H +D  ++     LD+ +           L  +FR    D  + W+      +  S
Sbjct: 158 RELVHPDDIADYLDFWNLDTIMERLSSASPSPFLLGQFRKAKKDGSYCWVAQTAVAVRQS 217

Query: 506 NGDILRYIGIANDITEQKKS-----LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
             D    +    DI EQK+          L +   D LTG+  +  F+ +   +L  S T
Sbjct: 218 RDDDQIIMCFVQDIHEQKEKSLEIKEHKPLPSTSIDPLTGLYRKNIFVQKAVRLLQTSGT 277

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGI 619
            ++    +MVIDI+ +K  N+  G   GD  L+ ++  + +  +  + +A  +  + F I
Sbjct: 278 HEHC---LMVIDIEHFKLFNEWYGQEAGDQFLIDISLHLKKAQEEHEGIAGYMGDDDFCI 334

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           IL ++           ++++ I   I   +  +    + G        +    M   A +
Sbjct: 335 ILPNDQ------AVISSLQQKIMGYIRHYQGNVGFLPAFGLYMIEDCGVPIQTMYDRAAI 388

Query: 680 AMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AM   K      + +    +     +  ++  ++  A+E  E      P   +   +I+G
Sbjct: 389 AMSSVKGNYTKRSCIYGSGMMQKMKNNHILLSEVQHALEQEEFTFYAQPKCNMATGKIIG 448

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LE+L++W+HPK G IS  EF+ + E    I  ++L++ +R+ R +  W D+ +   I I 
Sbjct: 449 LESLVRWNHPKRGMISPGEFIPLLESNGFITNLDLYVWDRVCRSVRDWIDRGHR-AIPIS 507

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++  D+   ++ +  + L  K    P  I++  +ES      E     + +LR  G +
Sbjct: 508 VNVSRVDVYSLDIVQTFKDLTEKYRLEPHLIEIEITESAYTEEYELINDTIEKLRASGFT 567

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTI 913
           + +DDFG+  S L+ L  +  D +K +   +    E+       IL +II MA+ +   I
Sbjct: 568 VLMDDFGSGYSSLNMLKDVNVDVLKIDMKFL-EMDEQSAEKGYGILEAIISMARFMGMKI 626

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           IA+ +  +  +  L  MGC Y Q  +   P+  +    LL ++  L
Sbjct: 627 IAEGVETKEQMDYLLNMGCTYGQGYYFYHPMPISVFEPLLADKNNL 672



 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 426  DRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D +  +     I G     +     N ++  +H +DR      ++  +  +   + +E+R
Sbjct: 1012 DFLYISDRFLQIFGFTRQEIKDRFGNKFMNMVHPDDRHLVSAGVEE-LERQDVIVNFEYR 1070

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            + + +  + W+I + R      G      GI  DITE       +      
Sbjct: 1071 MLSKNG-YIWVIDQSR-YMEYQGR-QFLQGIITDITETVNLRNRMSHLFVH 1118



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 102/345 (29%), Gaps = 50/345 (14%)

Query: 429  TTTPDIATILGL-ASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                ++  +LG  +       I    +  IH +DR+     +     Y        +R+ 
Sbjct: 877  FANHEMVRLLGYGSFEEFEQAIDGRVINTIHPDDREQVAKDI-GPEYYAGLEYTTTYRMP 935

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
              D  + W + + + +   +G     +    DI+E     +             +  R +
Sbjct: 936  KKDGSWFWSLDKGKVIEAEDGRFA-IVSACTDISEPMSVQQQ------------LAERNA 982

Query: 547  FLDRLTTILDLSATD---------DNLRPTVMVIDIDKY--------KKINDVLG----- 584
             L R +  L     D         D      + I  D++        ++I D  G     
Sbjct: 983  ILMRKSQELAFLNNDMPGGYHRCEDTPDYDFLYIS-DRFLQIFGFTRQEIKDRFGNKFMN 1041

Query: 585  --IAVGDDVLVSLTRRIGELLKFPDILAR-LSGNRFGIIL-----ISENNSLKIADFAIA 636
                    ++ +    +       +   R LS N +  ++     +       +      
Sbjct: 1042 MVHPDDRHLVSAGVEELERQDVIVNFEYRMLSKNGYIWVIDQSRYMEYQGRQFLQGIITD 1101

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK--NAELAMYHAKHRGGNHVES 694
            + +++ +   +    + +  SI        +I    + +   AE                
Sbjct: 1102 ITETVNLRNRMSHLFVHLPESIFLLRIREGRIEFRLLSEGFFAEYGYTAESLDQYVRTRF 1161

Query: 695  FRVSSFRSDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGL 738
            +  + +  +   I++DL  A++  + L L+   I    +  +   
Sbjct: 1162 YNDTVYPENLRQIRQDLLKAMKKIQNLRLLSTYIFLRKNHSLYHW 1206



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +L      G        +   + +P L     L +  I    ++ +      ++ I S+ 
Sbjct: 640 LLNMGCTYGQGYYFYHPMPISVFEPLLADKNNLDLRGIKARQLERLHIKELLNENIVSEA 699

Query: 405 ERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
                 +      V  + I       V        + G  +  +    R  L  I+  D 
Sbjct: 700 -----MLNNIMGGVAFYKIHGREIELVRCNEQYFKVTGSNAVDLEEQRRIILENIYEEDH 754

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                + DS         + + R    D    W+ + +  +    GD L Y G  +D+TE
Sbjct: 755 QTVFDLFDSADRSILNGAEADVRRLKDDGSTIWIHMHVYLLKKQGGDKLYY-GSISDVTE 813

Query: 522 QKKSLEG 528
           QK+  + 
Sbjct: 814 QKQREQR 820


>gi|260767504|ref|ZP_05876440.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260617404|gb|EEX42587.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|315178694|gb|ADT85608.1| sensory box/GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 761

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/577 (19%), Positives = 219/577 (37%), Gaps = 15/577 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               Q +         +F      S        ++   D              +LG  + 
Sbjct: 187 LCEAQDITWRKITEDKLFQREASLSHYYDLQPVMMLTLDEQNRIQQVNRFAEQMLGFDAS 246

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            M G       +       + R +L       +G  Q E   R AD    W+   IR + 
Sbjct: 247 QMLGH--RLKEFYLSEQALSARQMLLQPNQSLQGVWQREIEYRHADGHAIWVRENIRALV 304

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               +    + +  D+T  +K  + +   A  D LT   NR  F   L   L  + T+  
Sbjct: 305 ----ETGHLLIVGEDVTPTRKLADELAYQAKFDLLTNTYNRNQFELELAQALQETETELR 360

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D+ K +ND  G   GD  +      + E+L +  +LAR+ G+ F I+L  
Sbjct: 361 TH-AMLYLDLDQLKVLNDTAGHDAGDGAIQFCASMLEEVLPYNAVLARMGGDEFAILLKD 419

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 I    I +           +  + +T SIG      +  +   +   A+ A + 
Sbjct: 420 CTERDAIQVAKIIVATLAEHAFWWDDIRLNLTCSIGIRLIDHTATSPQMVHAQADTACHA 479

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLM-DEEIVGL 738
           AK  G N    +R       R  ++ +    +  A+    + L    I+ L  D+  +  
Sbjct: 480 AKEEGRNRYNLYRQDDADLCRRQLEMESVNLVHDALAKDRVELFAQQILALSGDDAGMHF 539

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++  +     +S   F+  +E   +   ++  ++E+  R   +         +   I
Sbjct: 540 EILVRIKNAAGEYVSPGIFVPASERYNVAHLLDKQVVEQTLRWFETRPQVLAHLGL-CSI 598

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   + + E  + + A + ++     +I    +E+  M N  ++  L  RL+++G  +
Sbjct: 599 NLSGHSMGNAEFIDTLLARLQRSDVPCEKICFEITETAAMRNLNQAIDLFSRLKQLGCRI 658

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAK 916
            LDDFG+  S   YL  +P D VK +G  +      E    ++RSI  +A+ +    +A+
Sbjct: 659 ALDDFGSGLSSFGYLKKLPIDIVKIDGLFVRDIDVNETDHLMVRSIHDLARQMGKQTVAE 718

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  E  ++ L  +G  + Q   +  P   + +++ L
Sbjct: 719 FVENEAILQRLREIGVHFAQGYQIGKPQPIDELVEQL 755



 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIATIL---GLASGSMHGPIRNW 452
           S+    D +R        S   +  +D     ++       +L   G++         +W
Sbjct: 74  SERQIRDHQRLLESVFEQSNHYIGIFDHQGGLISCNHKFQELLYRQGVSLEQPLWQHPHW 133

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                    +  +   +      R   Q+E  +  AD     +    +PM N  G+ ++Y
Sbjct: 134 ED----ASAERIKAYFEEVSTQPR---QFEAEIWHADQGAIVLEWAFKPMFNMPGEPIQY 186

Query: 513 IGIANDITEQK----KSLEGILCNAFQ 535
           +  A DIT +K    K  +     +  
Sbjct: 187 LCEAQDITWRKITEDKLFQREASLSHY 213


>gi|89093405|ref|ZP_01166354.1| hypothetical protein MED92_13171 [Oceanospirillum sp. MED92]
 gi|89082384|gb|EAR61607.1| hypothetical protein MED92_13171 [Oceanospirillum sp. MED92]
          Length = 715

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 246/571 (43%), Gaps = 23/571 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
                +    +     R       +          DI  + V      + I G     + 
Sbjct: 148 RFLIRFLETELVERHNRFRRINDNIDQLSSGAVITDINLNIVAANHQFSEITGYTKQEVL 207

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   + L      ++D + ++ +     + G        R    + ++  + I  +++S+
Sbjct: 208 GAHISKLSS--DANKDLYESMWNQI--SKTGLWSGTLWNRNKQGEEYFQHLTISEITDSD 263

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +  ++G  +D++           ++       +  R   + +L     L  +++  + 
Sbjct: 264 GMVTHFLGTLSDLSRIYNIDSLENNSSM-----KLIPR---IKQLEAEYQLRMSNEG-KA 314

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++V+DI ++  I++  G    + ++ S+ +R+ E     D +AR+  +   I+     +
Sbjct: 315 KLIVLDIQRFNTIHNTYGAKAAETLVESVEKRLKEACSSQDFMARIGKDEIAILCG--TS 372

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           SL +      +R+ I+ P  +   EI+++A+IG A+      + +E+   A +A    K 
Sbjct: 373 SLYLNMLIHEIRQVISRPFPINNTEISISANIGVATSPEHGDSLAEVANAATMASSSNKS 432

Query: 687 --RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             +G   V +  +     + + I+  L  A+E+S L LVY PI    ++ +  LEAL++W
Sbjct: 433 LAQGQVAVYTPELRQASVENLKIENQLRNAIESSGLSLVYQPIFD-RNKRLNKLEALLRW 491

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS + F+ IAEE  +I+ I  +++    R +  W+       + + IN++   
Sbjct: 492 SHPELGPISPARFIPIAEETGLIREIGDWVITEACRQLKIWKTSGLNV-VPVAINLSGHQ 550

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D  L + +          P  + L  +ESV+M   E  + +L  L K G ++ +DDFG
Sbjct: 551 LSDYSLVDKINRNCKLHGIEPELLNLEVTESVLMEQMETGKSILEDLTKEGFTIAIDDFG 610

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEID 923
           T  S L+YL   P   +K + + +     K    +L SII +A +++  ++A+ I  E  
Sbjct: 611 TGYSSLAYLNQFPASILKIDRTFVNDIDNKADTRVLDSIIQLANSLDMQMVAEGIETEQQ 670

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  L   GC + Q   +A PL  N +   L 
Sbjct: 671 LDYLMASGCQFYQGFLLAKPLPANCLQPYLS 701


>gi|115525693|ref|YP_782604.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115519640|gb|ABJ07624.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 613

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 124/474 (26%), Positives = 212/474 (44%), Gaps = 37/474 (7%)

Query: 513 IGIAND-----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +G+  D     ++    +L  I   A  D LTG+PNR      L +++        +  T
Sbjct: 114 VGVLADSFHKLVSRLNANLRRINMLAHSDALTGLPNRAVMTHMLESLVAT-----GMPGT 168

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-------------------- 607
            + ID+  +KKIND  G  VGD +L  + RRI ++    +                    
Sbjct: 169 AIFIDLQGFKKINDAFGYRVGDQLLQDVGRRIAKVGFDREIEQFDWGVSSFGEFERRAPQ 228

Query: 608 --ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              LAR + ++F  +L    ++      A A+ +++++  ++   EI +TA IG A    
Sbjct: 229 DITLARFAADQFVALLPGVVDADHCERHAKAVLQALSLLFDVGGAEIRLTAHIGLARVPL 288

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVY 724
                +E+L+ AELAM  AK             S  +     ++ +L  A+E  E+ L Y
Sbjct: 289 DTRDPAEILRFAELAMAAAKQERKPWRFFNAALSDVAVDRSRLESELQQAIERGEVQLHY 348

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P +     +IVG EAL +W HP  G IS + F+ +AE+  ++ A+   +L    R    
Sbjct: 349 QPQLDSRSLQIVGFEALARWSHPTRGTISPAVFIPLAEQSGLMPALGAHVLRSAVRQCAQ 408

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
              Q       + INI++    D        ++I++    P+ I+   +ES+ M +   S
Sbjct: 409 --WQRQGRRQRVAINISATQFDDPHFVRDALSVIAECGADPALIEFEITESMAMSDLPES 466

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              L  LR+ G+ + +DDFGT  S L+ L  +PF T+K + SL+ G   + K   ++++I
Sbjct: 467 HQNLIFLREAGVQIAIDDFGTGFSNLALLARLPFTTLKIDRSLIEGIGWSPKGEVLVKTI 526

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I MA+ +  +I+A+ +        L   GC   Q    A P+    I +  + R
Sbjct: 527 IAMAEGLGHSIVAEGVETPDQRAWLDDKGCHVHQGFLFARPMPAEEIDEWEQRR 580


>gi|209548193|ref|YP_002280110.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533949|gb|ACI53884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1062

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/571 (22%), Positives = 242/571 (42%), Gaps = 35/571 (6%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            R  LA+      +W+    R        +  + GLA  +       WL  IH  DR    
Sbjct: 489  RLDLALNSYQCGIWEARPDRGGSIWNERMHELYGLAPRNGFMTEETWLGCIHPEDRGLAL 548

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE---- 521
                              RV        ++    +      G+ ++ +GIA D TE    
Sbjct: 549  ES-ARHFKKNGDTHTLVCRVIVDGGAVRYVRSVGKVHQTGTGE-MKIMGIAFDATEDVLM 606

Query: 522  -----------------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                              + +   I  N+  D LT + NR+     L   L         
Sbjct: 607  TIRLKAAKDEAVAKNIELELAKNRIEHNSLHDPLTALANRRKLDIALEE-LTNDGRRQRQ 665

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            + +++ ID+D++K+IND LG A GD +LV  ++ + + ++  DI+AR+ G+ F I+ +  
Sbjct: 666  KFSILHIDLDRFKEINDTLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDV 725

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             ++      A  + + +  PI+          SIG A      + + ++L NA++A+Y A
Sbjct: 726  GDTEMAQLSA-RIIEEMRQPIDFQGFSCRCGVSIGVALANGIHVDARKVLINADIALYRA 784

Query: 685  KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K  G N  E F  +      +     +++   ++N E    Y P       E+ G+EAL+
Sbjct: 785  KSTGRNRFEFFNHNLQADIVNTKRTADEILAGIDNGEFTAWYQPQFSARTMELTGVEALV 844

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W HP  G ++  +F+ IA+E+ +++ ++  +LE   RD + W  Q    P  + +N+++
Sbjct: 845  RWKHPAKGWLAPDKFLRIADEINVVQMLDRIVLETALRDKMRWTAQGIAVP-KVSVNVSA 903

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR-LLLGRLRKIGISLTLD 861
            + L D  L E +  L       P  +     ES+ +   E      L  ++ +GI + +D
Sbjct: 904  RRLHDGSLLESLADL----HIRPGELSFELVESIFLDESEDVVSHNLEHIKALGIDIEID 959

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  + +  L  +    +K +  L+       +  A++RSII +A+++    +A+ + 
Sbjct: 960  DFGTGHTSIVSLLKLKPKRLKIDRQLVQPIVGATQERALVRSIIDIARSLGVETVAEGVE 1019

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 + L  +GCD +Q    + PL F+   
Sbjct: 1020 TAAHAELLRDLGCDILQGYAFSRPLSFDDFT 1050



 Score = 74.6 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +    L+     +++         +    +R  LA+  S   +W+ +     +      A
Sbjct: 304 IFFATLLLGERNRNITELETREAKLKELSQRLDLALESSNIGIWELEDHSSSLLWDARAA 363

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            + G  +      +  WL  I   DR+       S            +R+  AD     +
Sbjct: 364 ALHGKPAQEGSRALDEWLAAILPEDREIAEVHFFSCSIAGAACTAQ-YRILPADGGIRHL 422

Query: 496 IIRIRPMSNSNGDILRYIGIANDITE 521
                  +++ G + R IGI  D+T 
Sbjct: 423 RSVGAFYTDAGG-VSRTIGIVWDVTA 447


>gi|253997290|ref|YP_003049354.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983969|gb|ACT48827.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 626

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 220/449 (48%), Gaps = 16/449 (3%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D  E++     +   A+ D+LTG+PNR   +DRL   L         +  ++++++D+
Sbjct: 182 FQDYEEKEHGRIELHRLAYYDSLTGLPNRSLQIDRLNRALLECK-SSGAKGALILLNLDR 240

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----I 630
           +K +N+  G AVGD +L  +  R+  L++   +LAR+S + F +++  + +S       +
Sbjct: 241 FKTLNEARGHAVGDQLLCFIADRLKLLVETDGMLARMSADEFALLIQRDISSATEIGSLV 300

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGG 689
                 +R  + +PI L + E+  + SIG A++  + +  + ++ + A+ AM+ AK  GG
Sbjct: 301 NHLLDKIRVQLKLPIRLGDDEVIASGSIGIATFPVNIEDDAGDVFRRADTAMHRAKQNGG 360

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    F  S          I+ +L LA+   EL L     +      +VG E+L++W HP
Sbjct: 361 NQSILFEQSMASVAEQRFKIERELRLAIPAGELMLYLQSQVNAA-GVVVGAESLVRWQHP 419

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +  S F+ +AEE  +I  +++++L    R +   R      PI + +NI+ +    
Sbjct: 420 ERGLVPPSLFIPVAEETDLIVDVDVWVLTETCRVLA--RQDVYSLPIRVSVNISPRHFRQ 477

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                 ++ +++ T   P+ + L  +E +V+ N       +  L  +GI  +LDDFGT  
Sbjct: 478 RGFVSSIKTILADTGADPTHLTLEVTEGLVIDNISEVIAKMTELTLLGIHFSLDDFGTGY 537

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS+L  +P   +K + + +  +       A++ S++ +AK+++  ++A+ +  +    
Sbjct: 538 SSLSHLKRLPIHELKIDKTFVQDAPHDPDDAALVESVLAIAKHMQLNVVAEGVETQEQAD 597

Query: 926 ELTRMGCDYI-QDSHVASPLGFNSILKLL 953
            L     + I Q    + P+  +S ++ L
Sbjct: 598 FL-NARAEVIHQGYLYSKPVPASSWIEHL 625


>gi|188581500|ref|YP_001924945.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179344998|gb|ACB80410.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 664

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 201/446 (45%), Gaps = 9/446 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++        A  D+LTG+PNR+ F  RL  ++  ++        + + D+D++K IN
Sbjct: 209 EAQRLSAENERLAHTDSLTGLPNRRYFFQRLDALIAAASGRP-AAFALAIFDLDRFKPIN 267

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL    RR+         +ARL G+ FG+++ +        +    +  +
Sbjct: 268 DTFGHTAGDRVLEETGRRLEAFAGGGVTIARLGGDEFGVLIPAIAGPDAAVELCNRICAA 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI L E ++    S G A +  +   +  +   A+ A+YH+K R       F     
Sbjct: 328 LHAPIALGETQVVPGCSGGLALYPCAGRAADALFDRADYALYHSKERKRGMTTLFSQEHE 387

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + R    ++  L  A   +E+ + Y PI+    + I  +EAL +W  PK G +    F+
Sbjct: 388 DAIRAERAVETALQSADLAAEMEMHYQPILDTATDRITTVEALARWTSPKLGRVPPDRFI 447

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   MI ++ L +L +   D +            +  N++S DL   E    + A +
Sbjct: 448 AVAERCGMIHSLTLLLLRKALADAVRLPAGVG-----LSFNLSSHDLASPETVLAILAAV 502

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P RI L  +E+ +M + E ++  +  LR +GI + LDDFGT  S LSY+  +P 
Sbjct: 503 RQSGLDPRRITLELTETALMRDFEGAQQAITLLRALGIKIALDDFGTGYSSLSYVHRLPL 562

Query: 879 DTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +   M         +++ +I+ +  N+    IA+ I     +  + R GC Y+Q 
Sbjct: 563 DRIKIDRGFMADVESDLGRSVVITILGLCGNLGVDGIAEGIETAEQLSAVRRHGCRYVQG 622

Query: 938 SHVASPLGFNSILKLLKERFPLVKNT 963
             +  P     +L  L+   P  + +
Sbjct: 623 YLIGMPRPMTELLDDLRMTAPAERVS 648


>gi|289208551|ref|YP_003460617.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288944182|gb|ADC71881.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 469

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 206/444 (46%), Gaps = 9/444 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + +++     I   A+ D+LTG+ NR  F DRL   L  +   D     V+ ++ID+++ 
Sbjct: 30  VYKREHDRRVIEHMAYFDSLTGLGNRALFFDRLELALRRARRADQC-VAVLALNIDRFRD 88

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND++G   GD +L++L + + ++++  D  AR+ G+ F ++    ++S  +      + 
Sbjct: 89  INDMVGKQAGDQLLITLAQGLQDVIRETDTAARIGGDEFVVVFDGIDSSEDVEGLCQRVL 148

Query: 639 KSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           K++    ++    E     S G A +      +  + + AE A+  +K  GG  +  F  
Sbjct: 149 KALHHHHSMHTAEEFHPRLSAGVAVFPGDAPNAEALTRCAETALQRSKTEGGARLTVFDP 208

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +     + R  +++++  AV N EL   + PI+ L    I+G EAL++W     G     
Sbjct: 209 ALAERSARRRELEQEVRAAVSNGELTPWFQPIVALPGGRIIGAEALLRWQRA--GAPGPD 266

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ I EEL ++  +   +L    +    WR   +     I +N++   L  +     + 
Sbjct: 267 QFVPILEELGLMLEVGDQVLHTAMQQAADWRAAGHEFQ-RISVNVSPVQLKRDHFLTVLD 325

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++ T      + L  +E+V +      R  +  + + G+ + LDDFGT  S L YL +
Sbjct: 326 QALANTGLPAECVCLEVTENVYLEGDSSIRDRIAAISERGVHIALDDFGTGYSALGYLQW 385

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  DT+K + S +   G       ++RSII +A+ ++  + A+ I      + L  M C 
Sbjct: 386 LRLDTLKIDKSFVQPLGQDPYYSNLVRSIIGLAQALDLQVTAEGIEHPEAARMLASMDCT 445

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
           Y Q  +    +  +++  LL +R 
Sbjct: 446 YGQGYYFGRAMPADALTPLLHKRL 469


>gi|119468756|ref|ZP_01611808.1| putative unknown membrane associated protein, GGDEF family of
           nucleotide cyclase/hydrolase [Alteromonadales bacterium
           TW-7]
 gi|119447812|gb|EAW29078.1| putative unknown membrane associated protein, GGDEF family of
           nucleotide cyclase/hydrolase [Alteromonadales bacterium
           TW-7]
          Length = 636

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 213/425 (50%), Gaps = 18/425 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           QD LT + +R ++++ +   ++ +   + L   ++ ID+D +K++ND  G + GD++LV 
Sbjct: 184 QDKLTQLIDRHAYIEHIGRHINQTGQKE-LTCALLFIDLDGFKQVNDSFGHSFGDEILVQ 242

Query: 595 LTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +  R+  +L+   +            L+RL G+ F I + S + S K+ D A  +   + 
Sbjct: 243 VATRLANVLRHHKLSNINSANQLEQNLSRLGGDEFSIFIESLDESDKVVDIAKQVLSELE 302

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
               L  + + ++ASIG A++  S  T   +L+ A++AMY AK  G    + +       
Sbjct: 303 KDFVLGNKIVKISASIGIATYPESASTPQALLQLADVAMYRAKSDGKGIFKVYSPEMGNK 362

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 + E+L LA+   + YL + PI+ + D  I   EAL +W+HP  G IS +EF+ I
Sbjct: 363 MRRYHYLLEELRLAIACKDFYLSFQPIVHVEDCMIDYFEALTRWNHPVEGMISPAEFIPI 422

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  +++    R + +W +   M  + I +NI+   L   ++ + +  ++  
Sbjct: 423 AEESNLILELGDWIMLESCRQMAAWHNA-GMRKVKISVNISGIQLKHRDIYDWITKILKS 481

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    + + L  +ES  +    R    L +LR+ G+++ +DDFGT  S LS L  +P D 
Sbjct: 482 TGLPATSLMLEVTESTFIQASSRIIDELSKLREDGVTIAIDDFGTGFSSLSTLADLPIDV 541

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +T + + +    IL +I  + + +   I+A+ +      + + ++G   +Q  
Sbjct: 542 IKIDRSFITQANKSKKYNDILNTISELGQRLGLKIVAEGVEEIAQFELVKKLGVSSVQGY 601

Query: 939 HVASP 943
            V+ P
Sbjct: 602 LVSRP 606


>gi|160897916|ref|YP_001563498.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160363500|gb|ABX35113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Delftia acidovorans SPH-1]
          Length = 763

 Score =  403 bits (1035), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/768 (20%), Positives = 309/768 (40%), Gaps = 50/768 (6%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           +  R  +L+ +       L  +      +   V  PS  L          L ++ + F  
Sbjct: 12  LSLRRVVLVGSLW--ITSLTVLLAMALLMQDPVPWPSVRLN---------LVAAGVSFGA 60

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
           + L W R       +   G    A+    +      ++ +A   L            +  
Sbjct: 61  VLLGWRRHWKLASNLLVWGTWVAAVTVVAATGGVQSSSVLAFPAL-------LVMCAWVL 113

Query: 331 MKGYERAVLLIPAWILIFIWFIG-LWMAITKRLDNDII--------QPALVGGLVLIVIL 381
                 A+L++    +   W  G   +    + +   +           L G + L+   
Sbjct: 114 GVRTTLAMLVLSVLAMAAFWVAGREGVDWIGQRETSPVFSMLYFVGMLGLTGTVTLMARR 173

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 Q +  T    +    D  +   AV  + + +   D+ ++ V          G A
Sbjct: 174 SLIRRAQELQDTLGSLEQHQDDLRKFYRAVEQNPESIVITDVHQNIVYVNEAFLQRTGFA 233

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G   +    +   D   +   L      R    + +   R    +     + + P
Sbjct: 234 RNEVLGQPTHRYSTMG-LDAPAWEEALHQL--GRGALWRGQMTNRTRQGEDLPEAVLVAP 290

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +  S+G I+ Y+ +  D++E+ ++   I   A  D LTG+PNR S   RL  +       
Sbjct: 291 IRASDGSIVNYVELKQDLSERMRAERQIHALAHFDALTGLPNRLSLTQRLRALAREFREG 350

Query: 562 DN---LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                 R  ++++D+D++   NDV G   GD +L +L  R+ + L    +LAR+  + F 
Sbjct: 351 GKGGEPRHGLLLLDMDRFTAFNDVRGTVRGDALLGALALRLADALPDGVLLARMGADEFA 410

Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITS- 670
           ++L             +   A  ++ ++  P+ L     E+  + SIG AS+ +S+  S 
Sbjct: 411 VLLEKAGQEAAEVDQHMRALAQVLQDALERPLWLEETGEEVQASCSIGAASFAASRTDSG 470

Query: 671 -SEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPI 727
             ++L+ A +A++ AK  G   V  F+     +   R  I++DL  A+   EL       
Sbjct: 471 GHDVLRRAGVALHQAKQAGLGQVVIFQPDMAEAVGKRFRIEKDLRRAIPAGELQPYLQSQ 530

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +       VG E L++W+HP+ G +   +F+ +AEE  +I  +  +MLE+  R ++  R 
Sbjct: 531 VDH-MGRCVGAEVLVRWNHPRLGMVEPGDFIPVAEESDLIVQLGDWMLEQACRMLV--RP 587

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +       + +N++ +     ++ + ++  ++ T   P R+ L  +ESVVM + + +R  
Sbjct: 588 EFVQQGWRLSVNVSWRQFRQPDVVDKLKRTLAATGADPRRLTLEVTESVVMRDVDEARER 647

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPM 905
           +  L+ +G+ + LDDFGT  S L+YL  +PF  +K + S +    ++    A++ +I+ +
Sbjct: 648 MAELQLLGVEMGLDDFGTGYSSLAYLQRLPFRELKIDKSFVQDCHTSPGNAAMVEAILLL 707

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCD-YIQDSHVASPLGFNSILKL 952
           A+ +   ++A+ +  E     L     D   Q  H   PL     + L
Sbjct: 708 ARRLRLRVVAEGVETEEQAGTLRAWNQDVLFQGYHYGRPLPAVEWVDL 755


>gi|94500133|ref|ZP_01306667.1| response regulator/GGDEF domain protein [Oceanobacter sp. RED65]
 gi|94427706|gb|EAT12682.1| response regulator/GGDEF domain protein [Oceanobacter sp. RED65]
          Length = 559

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 195/430 (45%), Gaps = 11/430 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + + S E     A QD LTG+ NR  F   L   L  S+ +     TV+ +D+D +K IN
Sbjct: 129 DLRLSHERTQQLAQQDPLTGLSNRYFFEQSLKHAL--SSRNKESPITVIFLDLDNFKMIN 186

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D      GD++L  +  R    L+  ++ AR  G+ F I+L   +    I      + + 
Sbjct: 187 DTWSHKHGDELLRRVAVRTTSCLRGDEVFARFGGDEFVILLHEPHTINDITRITQRILQV 246

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P          +ASIG +   +  I+   +   A++AM+ AK  G + V  F     
Sbjct: 247 LAPPFEFDGFTFYTSASIGVSFNPNHNISPEVLTSQADIAMHKAKQDGKSQVCFFEKDMQ 306

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  ++R+ I+  L  A+ N E  L Y PI+ + +  +VG EALI+W+      +    F+
Sbjct: 307 KAFTNRLRIENGLRNALINGEFCLHYQPIMLVENNSLVGFEALIRWNQ-DGTLVPPDIFI 365

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A+E  +I  I  +++  +   +         P ++I IN++   L D  L + + +  
Sbjct: 366 PVAQESNLIMEIGRWVISEVIHQLSQL-----SPALYIAINLSPLQLRDPSLIDFLVSEC 420

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                S  R+ L  +E+            + +LRK G  + LDDFGT  S LS+L  +P 
Sbjct: 421 QAYGVSRHRLVLELTETAFTDQRTDVYDAVAQLRKDGFKVALDDFGTGFSSLSHLRNLPI 480

Query: 879 DTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            TVK + S++ + +  +   +LR ++ M + ++  ++ + +  EI  +    +G    Q 
Sbjct: 481 TTVKIDKSMLPSANNHRLELLLRGLVQMIQALDLDLVVEGVETEIQRQLCIDLGAVNAQG 540

Query: 938 SHVASPLGFN 947
                P   +
Sbjct: 541 LFFGKPESID 550


>gi|260222635|emb|CBA32391.1| hypothetical protein Csp_D31910 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 849

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 169/385 (43%), Gaps = 6/385 (1%)

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K++ND +G   GD +L+   RR+   ++  D +AR+ G+ F +++        +    
Sbjct: 316 HFKEVNDTMGHDAGDLLLMEAARRLRACVREHDTVARMGGDEFTLLITELETDSHLEHLL 375

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  +++ P  L    + V+ASIG             + KNA+ AMY AK  G N    
Sbjct: 376 QKLLHTLSSPFELHRERVFVSASIGVTLCPDDGSEVEALYKNADQAMYEAKGAGRNRFSF 435

Query: 695 FRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F          R  I  DL  A+   +  L + PI+ L   ++   EAL++W HPK G I
Sbjct: 436 FTPALHEAAVQRARITNDLHDALAQQQFELHFQPIVDLSSGQVRKAEALLRWRHPKRGMI 495

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ +AE   +I  I  ++   ++R ++ WRD  + P   I +N +          E
Sbjct: 496 SPADFIPVAEASELIVEIGDWVFSEVSRQLLVWRDTLH-PHFQISMNSSPVQFRRRCPAE 554

Query: 813 G-MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
                 +         + +  +E +++         L   R  GI + LDDFGT  S L+
Sbjct: 555 KSWVKRLEAMGLPGMSLVVEITEGLLLETNASVSEQLLEWRDAGIQVALDDFGTGYSSLA 614

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +  D +K + S + G        +  ++++ MA  +   ++A+ +        L  
Sbjct: 615 YLQQLDIDYIKIDKSFVQGLDPGGTQFILCKAMVVMAHALGLRVVAEGVETSQQRDLLIE 674

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
            GCD+ Q    + P+  +++  LL 
Sbjct: 675 AGCDFAQGYFFSRPMPADALQTLLS 699



 Score =  131 bits (330), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             LA+ GSG   WDW++       +     +LG   G +    R+++  IH  DR+    
Sbjct: 53  WKLALEGSGAGAWDWNLETGDQVHSRRWQEMLGYEYGEIVARNRSFVERIHPEDRERVER 112

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525
             + ++  +      E R+R  D  + W++     +  +++G  LR IG   DI E+K++
Sbjct: 113 SFNQYLEGKTASYSTELRLRCKDGTWKWILTSGMVVRRSADGKPLRMIGTHVDIQERKEA 172

Query: 526 L------EGILCNAF 534
                  E     A 
Sbjct: 173 EALLQQSEERWKLAM 187



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
            +         +    ER  LA+  +GD +WDW I   R   +  +  + G     +H  
Sbjct: 165 DIQERKEAEALLQQSEERWKLAMESTGDGIWDWHIPEGREFYSKRLVEMYGFTEEELHQH 224

Query: 449 IRNWLPYIHINDRDNFR 465
                   H +D     
Sbjct: 225 PDALDSRTHPDDLPQML 241


>gi|149194220|ref|ZP_01871317.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
 gi|149135395|gb|EDM23874.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
          Length = 651

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 209/426 (49%), Gaps = 14/426 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT + NR+     +  ++     + N +  ++ +D+D +K+IND  G +VGD++++
Sbjct: 233 LTDYLTRLGNRKFLEKSVKELI-----NKNEKFCMVFLDLDNFKEINDYYGHSVGDELII 287

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++  + E +K  +I++R+ G+ F +IL   ++   I +    +   +     L + EI 
Sbjct: 288 KISEILKEFIKEDEIISRVGGDEFVLILKGCDDKTYINNRLNKLLNQLNRRWVLRDYEIK 347

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
            + S+G + +  + I   E+LK +++A+Y +K RG N V  F        +    IK DL
Sbjct: 348 TSVSMGVSIYPDNAIIYEELLKKSDIALYESKSRGKNSVTFFDDMLEVKVKKEFIIKNDL 407

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E ++  L   P + +   +IVG E LI+W       I  +EF+ IAE+  +I  I 
Sbjct: 408 VKALEKNDFSLYLQPKVDM-TGKIVGCEGLIRWI-KNNQIIPPNEFIPIAEKSGLILKIG 465

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++++    +  +++  ++  I +  N++            ++ +  +     + +++ 
Sbjct: 466 EWVMKKSFDIVKEFQNDEDLKNIKLSFNVSPLQFKCENFLLNLEKI-KEF---ANMLEIE 521

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ESV + + ++++ ++ ++  +G  + LDDFGT  S LS L     D +K + + +   
Sbjct: 522 ITESVFIEDKKKAKEIIEKIHNLGFKINLDDFGTGYSSLSVLKEFDIDYLKIDKAFIDDI 581

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +E  +  +++I+ M+K++    +A+ +  +     L  +G D  Q    + PL     +
Sbjct: 582 MSENGMVFVKTIVNMSKSLSIKTVAEGVESKEQFNILKNIGVDVYQGYLFSKPLPKEEFI 641

Query: 951 KLLKER 956
           K +K  
Sbjct: 642 KFVKSY 647


>gi|318605544|emb|CBY27042.1| heme-regulated cyclic AMP phosphodiesterase [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 838

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 200/441 (45%), Gaps = 33/441 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ S + I   AF D+LTG+PNR  FL      + L+A   N    V+VI++D++K++N
Sbjct: 425 ERELSRKQIQHLAFYDSLTGLPNRTQFLVYAKQAIALAAEM-NYPLAVLVINLDRFKQVN 483

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD+ ++     +         +                           M   
Sbjct: 484 DSLGHAAGDEFIIM----LTSCTMQQTTV-----------------------RVEKMLSL 516

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P  +    I  +AS+G + +  + +    ++ +A++AM+ AK+ G  H   F     
Sbjct: 517 LSQPCQIANMNIIPSASVGISLYPENSMEMDTLMNHADIAMHKAKNMGRGHFNFFSAEMN 576

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++  +  ++ L  A     L L Y P + L D  + G+EAL +W HP  G+I    F+
Sbjct: 577 NLNQQRLDMEDALRHAFHIGSLELFYQPQVMLKDGHLYGVEALSRWKHPILGDIPPQRFI 636

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + L+ +E   R +  WR +    P  + +N++  +  +  L + +  ++
Sbjct: 637 PLAEESGLINELALWAIETACRQLADWRLRGIDVP-SVSVNLSPTNFHNLGLPDMILHIL 695

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + L  +E +++ N       + ++ ++G+ L++DDFGT  S LSYL  +  
Sbjct: 696 HHYHLPPQDLTLEITEDILIENNPTIFTTIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDL 755

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      E    +  ++I + ++++ ++I + +  E     L+R G    Q
Sbjct: 756 DEIKLDKSFVHDLEYDETSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYLIGQ 815

Query: 937 DSHVASPLGFNSILKLLKERF 957
               +  L    + K L+ R 
Sbjct: 816 GFLFSEALPAIKLEKWLEHRL 836



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 70/205 (34%), Gaps = 32/205 (15%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI-----NDRDNF 464
           A+  S   + ++D+    +    +     G     + G     L + H      ++    
Sbjct: 26  ALDHS-LAIIEFDLSSRIIEVNQNYLDYFGYQRDEVIGQYH--LMFCHPGYANSDEYQTI 82

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---E 521
           +  L +        L+  F     D    W+    +P+   +G + R + IA +IT   E
Sbjct: 83  KKSLLA-----GQSLEGRFERIHKDGSRVWLAAIYQPVPGPDGSVTRIVKIAKNITFLIE 137

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q+++ +  +       LT +       DR  + + ++A  +  +  V  I+   + K+  
Sbjct: 138 QQRATQEWVQL-----LTQL------TDRSDSAMFIAANSEQGQQAV-YIN-QGFTKL-- 182

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP 606
             G      +  ++   +       
Sbjct: 183 -FGYTPAQALGQNMVDLLQSAHPEQ 206



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           V        + G       G    + L   H                 R+  L  E    
Sbjct: 173 VYINQGFTKLFGYTPAQALGQNMVDLLQSAHPEQLALIDAT---SPEARQQLLPKEL-FY 228

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           + D Q HW    I  + N +G+    IGI  DIT  K   
Sbjct: 229 SKDRQPHWCSAVINSLVNEHGEPSYSIGILTDITMTKMYE 268


>gi|315506926|ref|YP_004085813.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
 gi|315413545|gb|ADU11662.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
          Length = 844

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/425 (27%), Positives = 205/425 (48%), Gaps = 8/425 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E     A  D LTG+ NR+  LD  +  L   +   +    +++ID++ +K++N
Sbjct: 369 ELARIAEDHAYAATHDALTGLSNRRHLLDEGSAQLT--SRHADGVTALVLIDLNHFKEVN 426

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL+ +  R+    +  D++ARL G+ F ++L         A  A A+  +
Sbjct: 427 DTLGHGAGDQVLIQVAERLRGAARPDDLVARLGGDEFAVLLRGLPAPAVAAHRAEALLAA 486

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +  P++L    I+V AS G A   ++   +  +L+ A++AMY AK  G      +    +
Sbjct: 487 LHDPLDLDGMRISVEASGGIAVAPATGGMAE-LLRRADVAMYQAKRAGQRVATYAPARDT 545

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  +L  AV + E  + + PI+ L   E++G EAL +W HP  G I    F+ 
Sbjct: 546 ADLSRLTLGGELPRAVADHEFTVNFQPIVDLGSGEVIGAEALARWHHPTHGLIDPLRFLE 605

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++ A    +L++      SWRD      + + +N++ + LLD      + A + 
Sbjct: 606 AVERSGLLPAFAEAILDQALIAAGSWRDAGFD--LPVSVNVSPRSLLDARFPGAVLARLR 663

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P R+ L  +E++ +   +    +L RLR  G+ L LDDFGT  S LS L  IP  
Sbjct: 664 AHDLPPDRLVLELTETLTLSQLDVVDRVLSRLRDSGVRLALDDFGTGYSSLSLLSRIPVH 723

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    +  +  A++RS + + ++++ T++A+ +  E   + L  +GC   Q 
Sbjct: 724 ELKIDRSFVGAMETAPEAAAVIRSTLDLGRSLDLTVVAEGVESEPQRRALWELGCAAGQG 783

Query: 938 SHVAS 942
              A 
Sbjct: 784 HLFAR 788


>gi|221230413|ref|YP_002503829.1| hypothetical protein MLBr_01750 [Mycobacterium leprae Br4923]
 gi|219933520|emb|CAR71845.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 623

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/456 (23%), Positives = 216/456 (47%), Gaps = 8/456 (1%)

Query: 504 NSNGDILRYIGI-ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +     L+ I      +  +  + E +   A  D+LTG+ NR++ +  L   L       
Sbjct: 149 DDELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDERLADGQRGP 208

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               T++ + +D+ K +ND LG   GD ++     R+ E  +   ++AR  G+ F ++  
Sbjct: 209 ---VTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLTVIARFGGDEFVVVPA 265

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +      FA  ++  +   + +    +T T SIG A+    + T+S++L+ A+ A  
Sbjct: 266 ESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVSIGVATGLPGRDTTSDLLRWADHAAL 325

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G   V            +  + +L LA + +++L L Y P + +   +++G EAL
Sbjct: 326 SAKSDGSKVVVL-DHGISAQHTLRTEVELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEAL 384

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +    F+ +AE + +   +   ++     +   WR         + IN++
Sbjct: 385 VRWQHPTRGLLFPDSFIPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVS 444

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L+     + +   + +     S + L  +E+VV+ N + +R  L  L+++G+ L +D
Sbjct: 445 PVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVHLAID 504

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S+L++L  +P DT+K + S +   GS    +AI+R+I+ +AK  E  ++A+ + 
Sbjct: 505 DFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMALAKEFELEVVAEGVE 564

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  + L  +GC+  Q   ++ P+   ++  LL +
Sbjct: 565 TAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK 600


>gi|319782634|ref|YP_004142110.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168522|gb|ADV12060.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 705

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/613 (19%), Positives = 238/613 (38%), Gaps = 22/613 (3%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI---QHVLATGYFSQGIFSDGERQSLA 410
             + +  +  + +      G +    +     ++     +         +     R  LA
Sbjct: 88  TELRLKHKQGHWVWVLDRGGVVERDAMGKPLRLMGVQTDISKQKAAEAELEQVNVRFRLA 147

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  SG  +W  D+   +         I GL S +      +W  Y+H +D+D        
Sbjct: 148 LAASGTGIWHHDLAGGKSYWDERTREIFGLVSDTAEVERDHWFGYLHPDDKDAASRAHLV 207

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR----YIGIANDITEQKKSL 526
            +   +     ++R+   D +   +   +R +++      R     +G   DITE K+  
Sbjct: 208 PLETDKVT-AVQYRIVRRDGEVRHIESLLRFIADPQIRDRRLAGQILGTVRDITEDKQRE 266

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A  D LTG+ NR +F   L   +  +     L  +V  +D+D +K +ND  G A
Sbjct: 267 QELAYAARHDALTGLLNRAAFDRLLADHIAAAQL---LPLSVFYVDLDYFKALNDFAGHA 323

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  L S+ + I   L      ARL G+ F +++ + + +         +       + 
Sbjct: 324 AGDLALKSVAQGILGCLPATAHAARLGGDEFALLMPNCDAAQAGRLADAVLAAVRDAELG 383

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS---- 702
                  + ASIG A    +  T ++ L  A+ A Y AK  G N    F   +       
Sbjct: 384 STATSRKLAASIGIAFVDDADTTVADALACADDACYAAKAAGRNRFAVFSTDTASGSGGL 443

Query: 703 DRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +   I  D   A+E+  L L    I       +E   +E L +        +   EF+ +
Sbjct: 444 NAARIVADTVDAMEDGRLKLFGQEIHLLGRPWQESRHVEVLARLAARNGRLVPPGEFIPV 503

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +   ++ +++      +           + +  N++++ L D +L + + ++I +
Sbjct: 504 AERFGIASRLDRWIIRTA---LSRHGAALRSGALTLGFNLSAQTLSDPQLWDFVDSVIEE 560

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    S I    +E+  + N + +   + + R+    + LDDFG   S   YL   P DT
Sbjct: 561 TGAPHSGIGFEITETAAVTNFDAAEQFVRKARERRCRVGLDDFGAGMSSFEYLRRFPVDT 620

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GS +   T+      I+ +I  +A+++   ++ + I  +  +  L+ MG  + Q  
Sbjct: 621 IKIDGSFIEHITQSRFDREIVLAITSIARSLGCDVVGEKIERQDTLAMLSDMGVAFGQGF 680

Query: 939 HVASPLGFNSILK 951
            +  P     I+ 
Sbjct: 681 LLHRPEPLERIVA 693



 Score =  118 bits (296), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + A+  +   VWDWD+V      +   A +LG     +      WL   H +DR+    
Sbjct: 14  WAKALERAHLGVWDWDLVTGDCFYSATWARMLGYDESELANTSDLWLQLTHPDDRERALA 73

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKS 525
             D  +      ++ E R++     + W++ R   +  ++ G  LR +G+  DI++QK +
Sbjct: 74  SGDRHIAGLTDAIETELRLKHKQGHWVWVLDRGGVVERDAMGKPLRLMGVQTDISKQKAA 133

Query: 526 LEGILC 531
              +  
Sbjct: 134 EAELEQ 139


>gi|254507313|ref|ZP_05119449.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549773|gb|EED26762.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 825

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 205/431 (47%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S   +      D+LT + +R+  +D   T+       D L  T+M+I I+K++ IND
Sbjct: 397 LKASFRALRTQLLYDSLTKLYSREGLIDTCDTL-------DKLDGTLMLIGINKFRDIND 449

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +LV ++ R+  +      L+R+ G+ F I +    +  + +  A  + ++ 
Sbjct: 450 SLGHYKGDQLLVIISERLRSVFSNECYLSRIGGDEFAIYIPGPQDKEQNSLTANRVLQAF 509

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
           A P  +    I V+ S+G  +        +  L+N  +A+ +AK         S  ++  
Sbjct: 510 ASPFVMEYESILVSISVGIVTQGPD-QNMTLWLRNGSIALSNAKQELTRISYYSPEMADV 568

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R ++   +  A+EN E    Y PI+ +   +++G EAL +W  P  G +S  +F+ I
Sbjct: 569 SRKRTLMLSKIREAIENKEFIPFYQPIVDIRSGKVLGAEALARWQSPSSGLVSPLDFIPI 628

Query: 761 AEELCMIKAINLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I  I   +L +   D +   R+        + +N++   L   +  E +Q +++
Sbjct: 629 AEESGLIGQIGEQILMQACNDAVKGIREGKWDTEFHLHVNLSVNQLSQPDFIETLQKVLT 688

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +  +PS + L  +ES ++ N   +   +  +R++G+ + +DDFGT  S L+YL  +PFD
Sbjct: 689 ISDLNPSNLTLEITESRIVDNDPVTIQNMQAIRELGVQIAIDDFGTGYSSLAYLHKLPFD 748

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +   T      +I+ ++I M + ++  I+A+ +      K L ++ C   Q 
Sbjct: 749 CLKIDRTFINKLTPNDLDTSIVAAVINMTRGMKVDIVAEGVETTEQAKMLAQLNCHQAQG 808

Query: 938 SHVASPLGFNS 948
              + P+ F  
Sbjct: 809 FLYSRPVPFQE 819


>gi|206579319|ref|YP_002238717.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
 gi|206568377|gb|ACI10153.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
          Length = 718

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 219/437 (50%), Gaps = 13/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D L+ +PNR++ L RL+ + +    D      V+ ID+D +K +ND  
Sbjct: 290 RGERQAREIAMIDWLSRLPNRRALLLRLSQVCETGKHDIQC---VVFIDLDGFKDVNDNY 346

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD ++  +   +   +    +LAR+ G+ F + +       + A FA A  + +  
Sbjct: 347 GHDVGDALIRHIASALQTRVPTGAMLARMGGDEFAMAVSGAKAIDRAAAFAWAALELLKA 406

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--R 701
           P+ L +R+I + ASIG AS   ++ +S+E+ + A++AMYHAK  G      +  +    R
Sbjct: 407 PVTLSKRKIYIGASIGIASGAPAECSSTELFRRADIAMYHAKKSGKGRTAWYDDALDAVR 466

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             ++MI+  +   +E  E  + Y P++      + G+EAL++W     G ++   F+ IA
Sbjct: 467 RHQLMIENGIRQGLEQDEFEVWYQPVVDADTLAMTGVEALLRWPRRPQGALAPDAFIAIA 526

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I A+  F+L+R   D+        +  + + +NI+     D      +   ++  
Sbjct: 527 ESSGLIDALGQFVLQRACSDLQ------PVDDLLLSVNISPAQFRDPAFENRVMKTVAAC 580

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + PSR+++  +ES V+ NPERS+ ++  L+  GI++ LDDFGT  S + YL    FD++
Sbjct: 581 RFPPSRLQVEVTESYVLENPERSQAVVENLKAQGIAVALDDFGTGYSSIGYLRCFRFDSL 640

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL         A  ++R  + +A+ +  T++A+ +     +  L R GCD +Q  +
Sbjct: 641 KIDKSLAGRVDSDEQAAEMVRGTVRIARALGMTVVAEGVEDPQQLTLLRRAGCDRLQGYY 700

Query: 940 VASPLGFNSILKLLKER 956
            + P+    +L+  + +
Sbjct: 701 FSKPMPIADLLQRRQSQ 717


>gi|15827936|ref|NP_302199.1| hypothetical protein ML1750 [Mycobacterium leprae TN]
 gi|13093489|emb|CAC30703.1| conserved hypothetical protein [Mycobacterium leprae]
          Length = 623

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/456 (23%), Positives = 216/456 (47%), Gaps = 8/456 (1%)

Query: 504 NSNGDILRYIGI-ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +     L+ I      +  +  + E +   A  D+LTG+ NR++ +  L   L       
Sbjct: 149 DDELRALQAIATLFAQLQARIVAEEQLRYLAEHDDLTGLLNRRALIAHLDERLADGQRGP 208

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               T++ + +D+ K +ND LG   GD ++     R+ E  +   ++AR  G+ F ++  
Sbjct: 209 ---VTLLFLGLDRLKAVNDYLGHNAGDRLIEVFADRLREAAESLTVIARFGGDEFVVVPA 265

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +      FA  ++  +   + +    +T T SIG A+    + T+S++L+ A+ A  
Sbjct: 266 ESVSVDVAESFAHRLQTRLQKQVVIDGEILTRTVSIGVATGLPGRDTTSDLLRWADHAAL 325

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G   V            +  + +L LA + +++L L Y P + +   +++G EAL
Sbjct: 326 SAKSDGSKVVVL-DHGISAQHTLRTEVELHLAGMIDTDLVLHYLPEVDMSTGKVLGTEAL 384

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +    F+ +AE + +   +   ++     +   WR         + IN++
Sbjct: 385 VRWQHPTRGLLFPDSFIPVAESINLAGKLGRMVMHSACAEFSRWRSAGVGLDALLRINVS 444

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L+     + +   + +     S + L  +E+VV+ N + +R  L  L+++G+ L +D
Sbjct: 445 PVQLVAEGFVDNVAGTLDEFGLDGSMVCLEITENVVVQNIDATRKTLAGLKEVGVHLAID 504

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S+L++L  +P DT+K + S +   GS    +AI+R+I+ +AK  E  ++A+ + 
Sbjct: 505 DFGTGYSVLTHLKSLPVDTIKIDKSFVAELGSNASDLAIVRAIMALAKEFELEVVAEGVE 564

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  + L  +GC+  Q   ++ P+   ++  LL +
Sbjct: 565 TAVAAQVLLELGCNRAQGFLLSRPVDGAAMESLLAK 600


>gi|302865437|ref|YP_003834074.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|302568296|gb|ADL44498.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
          Length = 843

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/785 (18%), Positives = 282/785 (35%), Gaps = 49/785 (6%)

Query: 200 SLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEI 259
             +  F        R        ++ W     +   +   +  +   +   +        
Sbjct: 61  IAIVAFAVAQLARLRFRTASGMVSITWGEAALVVCLWLVPAGWLPAAALLGVGAAWTVMS 120

Query: 260 ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV 319
            +              +     +  +  +G    A     +    +    +A  T    +
Sbjct: 121 MV--------------SDRRPALELVAIAGSLTAATALAAAVATALGPPLLAAPTPELAL 166

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA--ITKRLDNDIIQPALVGGLVL 377
                 + Y     +  AV L     +     +   +   +   + N  +   +V  L L
Sbjct: 167 TLTAAAVTYLLTTAFLGAVTLALRHGIAIGPPLLAALRGKLLMFVGNVAVGLVVVALLEL 226

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQ-SLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
               +        L    +   + +D ER+   A   +   +   D             T
Sbjct: 227 DARWLLLLPPPLWLLQQTYRHRLRADQERRTWRAFAEATAALNQLDERGVATAAVTGALT 286

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA-------D 489
           + G     +           +  DR     + D  V    G    E  +           
Sbjct: 287 LFGAELVEVDVARGEGRWRRYRADRGG--QVRDREVEPSAGADAGEHELVRRLAVGSADV 344

Query: 490 NQFHWMIIRIRP--MSNSNGDILRYIGIANDIT------EQKKSLEGILCNAFQDNLTGI 541
            +      R  P      +G       +A  +       E +        +A  D LTG+
Sbjct: 345 GRLRVRFARSAPPSARERDGVAAFGDALAAALHDAATHRELRLVTARSSYDAVHDQLTGL 404

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR + L +    L   A D      ++++D++++K++ND LG + GD +L   + R+  
Sbjct: 405 LNRAALLAKGDQALRQRAHDH--PVALLLLDVNQFKEVNDTLGHSAGDQLLRPTSNRLAA 462

Query: 602 LLKFPDILARLSGNRFGIILISENNSLK-------IADFAIAMRKSIAMPINLLEREITV 654
           L +  D+L RL G+ F ++L S                 A  + + +A P  +    ++V
Sbjct: 463 LTRPGDLLGRLGGDEFALLLTSVPLVEDRTAPLAYALRQAREVAERLAAPTEVAGVRMSV 522

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-SDRVMIKEDLCL 713
             ++G     +     +E+L+ A++AMY AK  GG+            +D + +  ++  
Sbjct: 523 EVAVGVVVADAGAADLTELLRRADIAMYQAKEGGGSVAAYDSSRDAASTDHLALLAEMRE 582

Query: 714 A-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A   + +L L   P + L      G+EALI+W HP+ G +  ++F+   E    + +   
Sbjct: 583 ALAADDQLVLALQPAVDLATGAPTGVEALIRWRHPRRGWLGPADFIRPVENSEQLGSFTR 642

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L++       W       P  I +N++++ LLD  L   ++  + +    P R+ L  
Sbjct: 643 YVLDKALEVASGWARDGLDVP--ISVNLSARSLLDPRLPAEIEEALRRHQVPPHRLVLEI 700

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E+VVM   E    +L  LR +G+ L +DDFGT  S L++L  I  D +K + S +    
Sbjct: 701 TETVVMSELEVIDEVLATLRGMGVQLAVDDFGTGFSSLTFLTRIAVDELKVDRSFVLRMA 760

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            + +  AI+R+ + +A  +   ++A+ +        L  +GC   Q  H   P+  + I 
Sbjct: 761 DSPEAAAIVRTTVGLAHELGLRVVAEGVETAEQRTALAELGCTAAQGYHFFKPMPADKIA 820

Query: 951 KLLKE 955
            +L  
Sbjct: 821 AVLAS 825


>gi|315186902|gb|EFU20660.1| diguanylate cyclase/phosphodiesterase [Spirochaeta thermophila DSM
           6578]
          Length = 676

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/674 (19%), Positives = 267/674 (39%), Gaps = 24/674 (3%)

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
            C+ I F     + +V +S+       + L       + G++        +   +L+   
Sbjct: 18  VCLGISFLGYVVFILVGSSVTGAYAILVGLVPLITAYFLGVRRVP-----VVTALLLVGA 72

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
              +          D+    +   L+L   +        +       + +    +    A
Sbjct: 73  TEFVASGGWGLYLQDVSARYMGDLLLLAAGVF-------LEVVRSLRKEVRERSKEFLFA 125

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILD 469
           +  + +  + +   R     +                 P R +   IH  DR+    +  
Sbjct: 126 LDTAEEGFFRYTPWRGEFVFSKRFCEHFAPELSPFVSYPARVFFENIHPMDRERVEEMFV 185

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEG 528
                   R  +E RVR    +F  + +        NG     +IG   D+T+ ++  E 
Sbjct: 186 GKHWAEGQRFSFECRVRRDSGRFLTVKVYGLVYIAENGRRHPVFIGFMEDVTQTRELEEK 245

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +     +  ++G+     F +R+   +         +  ++V   +   ++ D+ G    
Sbjct: 246 LDELTHRHRISGLETAPRFYERVGARI---GRGTEEKLALLVASPEDLSEVTDLYGHEAR 302

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D V+  +  R   + +  D+L  +    F   L   ++S  +A FA  +  + A P  + 
Sbjct: 303 DLVIKEIADRFLLVKRRGDLLFHIEDQTFVFTLEGASSSGDVALFAQRILDTFARPFFVR 362

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMI 707
              + ++  +G A    +  ++  +L++AE A++HA+  R G    S  +    + R+  
Sbjct: 363 GTPVYLSGVVGIALHPENGGSAEVLLQHAEAALHHARRERSGFRFYSQSMLQGAATRLRR 422

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL L Y P++ +    +VG EAL++W HP+ G I  SEF+ IAE+  +I
Sbjct: 423 MRDLQRALREEELELYYQPLVSIE-GVVVGAEALLRWRHPREGLILPSEFVPIAEDTGLI 481

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  +++ R A     WR +     + I +N++ + + D +L + ++  +S+    P  
Sbjct: 482 FPLGRWVISRAAEAWGRWRREGL-SSLLISVNLSPQQIKDVQLVDHLRETLSRHGIPPGY 540

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E   + +   SR    RL ++GI + LDDFGT  S   Y+   P   +K + S 
Sbjct: 541 LTLEITERTFLEHMG-SREFFSRLEEMGIGIALDDFGTGYSTFQYIKQYPVKAIKIDKSF 599

Query: 888 MTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G     + +AI+++I+ +A  +   +IA+ +  E     L    C   Q      PL 
Sbjct: 600 VQGLPARGEDVAIIQAILTLADGLGLAVIAEGVENEQQALLLRTFNCQIFQGFFYKEPLR 659

Query: 946 FNSILKLLKE-RFP 958
               ++ +K    P
Sbjct: 660 EEEFIQYVKALHRP 673


>gi|218247444|ref|YP_002372815.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|218167922|gb|ACK66659.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
          Length = 617

 Score =  402 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 211/424 (49%), Gaps = 4/424 (0%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           ++ D LT +PN+    + L+  L  +  + NL   +++IDI  +KKIND +  ++GD +L
Sbjct: 183 SYTDPLTDLPNQILVNEYLSIALTNAKRNKNL-VGLILIDIKDFKKINDNVSYSIGDQIL 241

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + +R+ + L+  DI+ R  G++F I+L        +      + K +  P+ + ++  
Sbjct: 242 QQIAKRLKDYLRSGDIVGRWGGDQFSILLTQVKTIENVEKVIKRLIKILQEPLPIDKQIY 301

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           T+   +G A +      S  ++   E  +  AK  G         +   S  +  ++ L 
Sbjct: 302 TLDYYLGLAIYPQDGDGSQRLIGYVERQIADAKKSGNCITLKEASAEINSQLLQFQKRLK 361

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + EL L Y P + ++  +I G+EALI+W HPK G +   +F+  AE+  ++  +  
Sbjct: 362 QALIHQELSLHYQPQVNIITGQIEGVEALIRWHHPKQGLLLPQKFLSWAEKTDLLIPLTR 421

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE       +W++    PPI + +N++++     +L + ++ ++  T      ++L  
Sbjct: 422 WILETACTQNKAWQNDGL-PPILMSVNLSTEQFYHPQLIKLIKQVLLATGLKSRWLELEI 480

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E+ ++ + +++  +L  L+ +G+SL LDDFG     +SYL   PF  +K + S++    
Sbjct: 481 TETTILKDSQKAYRILKALQHLGVSLCLDDFGKGYGAISYLSDSPFQKLKIDLSVIQKLK 540

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   ++ ++I +A+  +  ++A+ +  +  +  L  + CD IQ    + PL      
Sbjct: 541 ENPENTMMISALIALAEKFQMRVVAEGVETQQQLDVLYTLQCDAIQGYRFSRPLPVEEAT 600

Query: 951 KLLK 954
           + L+
Sbjct: 601 EFLQ 604


>gi|332670071|ref|YP_004453079.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Cellulomonas fimi ATCC 484]
 gi|332339109|gb|AEE45692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cellulomonas fimi ATCC 484]
          Length = 731

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/568 (23%), Positives = 238/568 (41%), Gaps = 12/568 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T +  V         +     +  +A+  +   +   D+    V      A +LG    
Sbjct: 169 LTTLVDVTGRREVEAALSRSETQFRVAMENAPIGMALVDLDWRIVEANAAFAELLGTRVD 228

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++ G             R   R  +D  +     R   E +   AD    W+++    + 
Sbjct: 229 ALRGYP--MADLAEPEGRAAERVEVDRLLEGGLPRFSLEQQYVRADGLTVWVVLDAALVR 286

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +++G    ++    D TE +   E +   A  D LTG+ NR    + L ++L+     D 
Sbjct: 287 SASGSPDHFVVQVRDSTESRLQAEMLTHRAMHDPLTGLANRTLMQEVLQSVLEQPGVVD- 345

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  V+  D+D +K++ND  G A GD++LV +   +         +ARL G+ F +++  
Sbjct: 346 -RVAVIACDLDGFKQVNDRYGHAAGDELLVHVAAVLRAATARRGTVARLGGDEFVVVVQD 404

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT--SSEMLKNAELAM 681
            +    + + A A+   +  P  +  R + V ASIG A      +   +  +L  A+ A+
Sbjct: 405 ADGPRAVFEIAAAIHAGLVEPARIARRRVQVAASIGIALADPETVEGGAPALLAAADAAL 464

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           Y AK  G    E +  S   +    +  +L  A+   +L + Y PI+ L D  +VG EAL
Sbjct: 465 YRAKGAGRGRTEVYDSSMGVATTSSLHRELTDAIATRQLVVHYQPIVDLADMRVVGYEAL 524

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +    F+ + +E  M   +  F+   +   +    D+      ++ IN++
Sbjct: 525 VRWQHPHRGLLLPGAFLPLVQEAGMSVPLAQFVATEVVEFVSQTTDRTR----WVSINVS 580

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L D E    +   IS+   +  RI +  +ES ++ +  R R  L +L   G+ + LD
Sbjct: 581 ADQLGDGEFATTLLGEISRRRVAAGRIVVELTESSLVASGTRIRHELTQLSAAGVPILLD 640

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P   VK + S  +G         + R++  +A+ +    IA+ I 
Sbjct: 641 DFGTGVSPLSYLRDLPVAGVKLDMSFTSGIPDDPTAGKVARALGALARELAMVTIAEGIE 700

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +   + L R G  Y Q          +
Sbjct: 701 HDEQARYLHRNGWRYGQGWLFGGAQPGD 728


>gi|300854651|ref|YP_003779635.1| hypothetical protein CLJU_c14650 [Clostridium ljungdahlii DSM
           13528]
 gi|300434766|gb|ADK14533.1| conserved protein with a sensory box/GGDEF and EAL domain
           [Clostridium ljungdahlii DSM 13528]
          Length = 657

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 196/426 (46%), Gaps = 11/426 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  + +   AF + +T +PN+   L+ L   +    T       ++ +D+D +K +ND L
Sbjct: 222 KISKKMDYYAFHNCVTDLPNKNYVLNTLVKEIPKIKTYS----ILISLDMDNFKAVNDTL 277

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+ L    RR  +++   D +    G+ F  ++ S  N  +       +      
Sbjct: 278 GHISGDEFLKQAGRRFKKVMHIQDYICHNGGDEFLFLIRSVKNKDEAEVMLREILNVFKK 337

Query: 644 PINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           P N+  + +  VTAS+G A           + ++A+ AMY +K  G +    +  +    
Sbjct: 338 PFNIYGKNVDYVTASLGVAVIPKDGNNFETLYEHADDAMYESKRIGKHVYSFYNDAINVG 397

Query: 703 DRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 +   +   ++N E  + Y P I     E++G EAL++W       I  SEF+  
Sbjct: 398 IYEETIKKKAIEDGIKNGEFKVFYQPKIS-KHGEVLGAEALVRWIKEDNKIIPPSEFIDF 456

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +IK I   ++  + +++ +W D+       I +N++++ L+D++LC+ +  +I  
Sbjct: 457 AEREGLIKYIGKSVIVEVCKNVSNWIDK-GYKNFKIAVNLSTEQLIDSKLCDNLLEIIEG 515

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I+   +E+ V  N + +   + ++R  GI ++LDDFGT  S L+YL  +P D 
Sbjct: 516 FKVPFEYIEFEVTETTVAKNFDEAVNNINKIRANGIKISLDDFGTGYSSLNYLKNMPIDV 575

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T    +  ++ +II ++      ++A+ +     I+ L  +GCD  Q  
Sbjct: 576 IKIDKSFVDDITSNEASVVMVNTIISLSHYFGYEVVAEGVEAIEQIENLKSLGCDIFQGY 635

Query: 939 HVASPL 944
           +   P+
Sbjct: 636 YYGKPM 641


>gi|300713255|ref|YP_003739294.1| Diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299060326|emb|CAX53576.1| Diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 543

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/430 (26%), Positives = 203/430 (47%), Gaps = 11/430 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + +     A  D LTG+ NR+ F+++LT  L    T ++    VM+I++D++K IND  G
Sbjct: 94  ARQEAFRLARHDELTGLYNRRIFIEKLTFWL----TGESPTAAVMIINLDRFKPINDTYG 149

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GDD L  +  R+         +AR  G+ F +++       ++A     +  S++ P
Sbjct: 150 HAGGDDALCEIAGRLRRFSNKDITVARTGGDEFAVLISGVIGRDELAALGARICTSLSQP 209

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
           +  L   ++   SIG A +     T+  +L+ A+ AMYH K   RG              
Sbjct: 210 LMSLPHPLSAGVSIGIALFPDDAETADALLRCADTAMYHTKSTERGTFCFYDLSFGEAVR 269

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R   + ++  AV N+E    + P+I L   +I G E L +W HP  G +  ++F+   +
Sbjct: 270 SREQFEREIRSAVLNNEFVPWFQPVISLHSGKISGFEILARWHHPARGLLMPADFISDVD 329

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               + A+   +L +  R             + + +NI +    D  L E +Q L+ +  
Sbjct: 330 RTGCMPAMTESLLRQACRHFRD-----RYTDMTLALNIPASMAEDLTLPETIQRLLREEG 384

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SR+++  +E  ++ N   +R+ L + R +G++++LDDFGT  S L +L  +  D +K
Sbjct: 385 LPLSRLEIEITEDTLIANMASARINLDKFRAMGVTVSLDDFGTGYSGLYHLTQLSIDKIK 444

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + S +   T ++  ++ +I+ M K++E  I A+ I      + L+  GCD+ Q      
Sbjct: 445 IDRSFIALKTSRKNQMVDAILAMGKSLEMQITAEGIEQMEAARWLSAHGCDFAQGWLFGM 504

Query: 943 PLGFNSILKL 952
           P+  + I  L
Sbjct: 505 PVPADEISGL 514


>gi|288940176|ref|YP_003442416.1| response regulator receiver modulated PAS/PAC sensor-containing
            diguanylate cyclase/phosphodiesterase [Allochromatium
            vinosum DSM 180]
 gi|288895548|gb|ADC61384.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Allochromatium vinosum DSM 180]
          Length = 1380

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 132/581 (22%), Positives = 251/581 (43%), Gaps = 29/581 (4%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             I+++L      + +      QS  +    D +   D     +        + G A    
Sbjct: 807  RIRYLLRGQATLEALHRSEASQSALIAAIPDALLRLDSQGRVLQFKSGW--LPGQARARP 864

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               +      +  +     R  L + +     R + E  V    ++      R+  + ++
Sbjct: 865  ESSVSTLSDLLPESACAVIRRELAATLVEHGVR-ELEIDVTDEHDEARVFEARLIAI-DA 922

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            +    + I +  D+TE+++    I   A+QD+LTG+ NR+ F           A   + R
Sbjct: 923  D----QIILLLRDMTERQRRQRVIQQLAYQDSLTGLANRRRFNLD-LARALAHARRRDDR 977

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF------------PDILARLS 613
              ++ +D+D++K++ND LG  +GDD+L    +R+ + +                 +ARL 
Sbjct: 978  LALLCLDLDRFKRVNDSLGHGIGDDLLRVAAQRLQDAVDEVGTALKPQGIAFAGTIARLG 1037

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+   +IL   +        A A+      P  L    +  TASIG A       T   +
Sbjct: 1038 GDELTLILKGRDAERIAMRVADAILNKFRQPFRLGGHSLVCTASIGIALSPDDGDTPEIL 1097

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLM 731
            LK+A+ A+Y AK +G +    F        R  ++ +  L  A+E+ E  L Y PI+   
Sbjct: 1098 LKHADTALYAAKLQGRDTYRFFTAPMGARVRQRLETEARLRHALEHDEFRLHYQPILDSR 1157

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
                + LEAL++W+  + G      F+ +A+E  +I  I  +++  I R +  W +Q ++
Sbjct: 1158 TRAPIALEALLRWEDREQGLREPESFIPVADESGLILPIGAWVIAEIGRQLAHWANQGHV 1217

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             P  + IN++     D  L E +  L       P  I+L  +ES+++    R    L RL
Sbjct: 1218 QP--VSINLSEAQFSDRGLIERLFRLARA--CPPGTIELDVTESLLLARDARLLDTLARL 1273

Query: 852  RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNI 909
            R+ G+ + +DDFGT  S L+ L ++P DT+K + + +     +     ++R++I +   +
Sbjct: 1274 REQGMRVAIDDFGTGYSSLALLKHLPIDTLKIDRTFIQEIGREHTTELLIRTMIGLGHGL 1333

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               ++A+ +  E  +  L R GC  +Q   +  P+  + ++
Sbjct: 1334 GLRLVAEGVETEEQLAFLAREGCHAVQGFLLQPPVPASKVV 1374


>gi|152989760|ref|YP_001355482.1| signal transduction sensor histidine kinase [Nitratiruptor sp.
           SB155-2]
 gi|151421621|dbj|BAF69125.1| signal transduction sensor histidine kinase [Nitratiruptor sp.
           SB155-2]
          Length = 661

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/553 (23%), Positives = 243/553 (43%), Gaps = 34/553 (6%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           + DI+   D     +    +  TILG     + G   N   +IH +D++ F+T+L     
Sbjct: 132 APDIIVQLD-RNGIIKVKSNAVTILGYDLKDVVGK--NIFDFIHPDDKEKFQTLLSKAFD 188

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +      E+RV  A  ++ W+   I    + N      I I  DIT++KK  E IL   
Sbjct: 189 NKGKSFFIEYRVLNAKGRYVWLEGNITVPPDEN----EAILIERDITQRKKIQEKILHLT 244

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR  F + L  ++  S         ++++ I   +++         +    
Sbjct: 245 YFDPLTKLPNRVLFEESLRGVVFQSR-----YVALIMVKITNVEQL-------QINCTKK 292

Query: 594 SLTRRIGEL---LKFPDILARLSGNRFGIILISENNSL--KIADFAIAMRKSIAMPINLL 648
            +  R+ E+   L    ++     + F I           ++      ++  ++      
Sbjct: 293 EIFHRLKEIFEQLFSHSLMGITLMHEFMIAFPFHEYEEYRQLDTILKKLQTELSS-FEAC 351

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
            ++I +  +IG A +  S   + +++  A++A+Y +  +G N++E F     +       
Sbjct: 352 SKKILIHYNIGIALYPKSAKNTEDLINLAQIALYQSIKKGPNNIEFFSKDIQKKYEREQK 411

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I E L  A++N EL L Y PI  +   + +G E LI+W   + G +  SEF+ IAE    
Sbjct: 412 ILEYLPNAIKNRELQLFYQPIFDIKTLQCIGFETLIRWFSKELGIVPPSEFIPIAETNGF 471

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  F+LE     +  ++        FI +N ++KD     L + +        +  S
Sbjct: 472 ISEITDFVLESAMGAMQEFKKSY-----FIAVNFSAKDFKSQNLIDRIVKKAKNIDFDLS 526

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ +  +E+  M +PE +++++ + +  GI + LDDFGT  S +SYL     D +K + S
Sbjct: 527 RLVMEITETTAMEDPELAKIVIQKAKSYGIQVALDDFGTGYSSMSYLSSFDVDKIKIDLS 586

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      +K   I+R+II +A ++    +A+ I  E  +++L   GCD  Q  +    +
Sbjct: 587 FVIDIVTNKKNEFIVRTIIDLAHSLGAKALAEGIENEEILEKLKSFGCDEGQGYYYLPSV 646

Query: 945 GFNSILKLLKERF 957
               I + L E+ 
Sbjct: 647 SLEKIREFLGEKN 659


>gi|303325687|ref|ZP_07356130.1| sensory box protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863603|gb|EFL86534.1| sensory box protein [Desulfovibrio sp. 3_1_syn3]
          Length = 468

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 201/457 (43%), Gaps = 23/457 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +     +      D LTG+PNR+S  + L   +       +    V++ DID +K  N
Sbjct: 14  EWQAQNRRLTELNATDYLTGLPNRRSLEEYLEKAIAR----GSGNLGVVMADIDAFKSFN 69

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD VL  + R + + +     +++RLSG  F I+L    ++  I   A  + +
Sbjct: 70  DAYGHMAGDQVLAGIARCLQDAVPKGKGLVSRLSGEEFVIVLPD-ADAESINQVAETILR 128

Query: 640 SIAMPINLLER----EITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVES 694
           +I       +     +  VT S+G   W      T  E++  A+LA+  AK  G +    
Sbjct: 129 NIQKQNLRHDIVPLTDTHVTLSMGSILWERKEPHTPRELIYQADLALSQAKKNGRDQHVL 188

Query: 695 FRVSSFRS--------DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           F    +            + ++  +  A+   E    + P + L    I+G EAL++W H
Sbjct: 189 FSEKDYTFRLLQNSRSHDLEVESAMHEALNQREFVPYFQPKVDLKSGRILGAEALVRWLH 248

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +    F+ + E    IK I+L+M E + + + +  D    P + +  N +    +
Sbjct: 249 PQKGLLFPDYFIPVFERNSFIKRIDLYMFEEVCKILRNRLDS-GKPVVPVACNFSRLHFI 307

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D    E ++++  +     + +++  +ES +M +P+       +LR+ G ++ +DDFG  
Sbjct: 308 DENFAERLKSIADRHAIPYAFLEIEITESALMDDPDAIIQQNRKLRESGFTVAIDDFGVG 367

Query: 867 CSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L  L  +P D +K +   +    TE++   I+R I+ +AK     I+ + +  +   
Sbjct: 368 YSSLGLLQDLPADVLKIDRCFVQRDLTERKSIMIIRGIVQIAKTFGLKIVCEGVETKEQQ 427

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER-FPLV 960
             L+  GCD  Q  + + P+    +  LL  + FP  
Sbjct: 428 DILSETGCDLGQGYYYSRPVELAKLESLLDGQGFPAT 464


>gi|262163569|ref|ZP_06031313.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
 gi|262027995|gb|EEY46656.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
          Length = 750

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/563 (18%), Positives = 211/563 (37%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
              +F               ++   D              +LG  + +M G         
Sbjct: 190 EDKLFQREAGLRHYYDQQPVMMLTLDERNHIQQINQFAEQLLGYPADAMLGHHIRDF--- 246

Query: 457 HINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           + +D     R +L           + E   R    +  W+   IRP+     +    + +
Sbjct: 247 YQDDEALTPRQMLLLPSRNASSVWRREVCYRHHSGEVVWVRENIRPLV----ETGTLLIV 302

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+
Sbjct: 303 GEDISETRQLADQLAYQARYDLLTHTLNRNQFELELAKALKETESQLRTH-AMLYLDLDQ 361

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K +ND  G   GD  +      + E+L F   LAR+ G+ F ++L              
Sbjct: 362 LKVLNDTAGHDAGDGAIQFCASMLEEVLPFKATLARMGGDEFSVLLRDCTERDAELVAQN 421

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +     +P         +T SIG      +  +   +   A+ A + AK  G N    +
Sbjct: 422 IIHALSEVPFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNLY 481

Query: 696 RVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWG 750
           R       R  ++ +    +  A+ N  + L    I+ L   ++ +  E L++  +    
Sbjct: 482 RQDDADLRRRQLEMECVNLVHDALANERIELFAQRIVPLNQPDLQLHFEVLVRIKNAAGE 541

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+  +E   +   ++  ++E+    +   R +       + IN++   + + + 
Sbjct: 542 YVSPGIFVPASERYNLAHRLDRQIVEQTLSWL-EVRPEVVDKLGRVSINLSGNSIGNPDF 600

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +  S S++    +E+  M N  ++  +L +L+ +G  L LDDFG+  S  
Sbjct: 601 VAFLLDRLGNSQISCSKVCFEITETAAMRNLNQAIAVLSQLKGLGCVLALDDFGSGLSSF 660

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL  +P D VK +G  +    +      ++ SI  + K +  T +A+ +  E  ++ L 
Sbjct: 661 GYLQKLPVDIVKIDGIFVCDMDQNEMDRLMVHSIHELTKQMGKTTVAEFVENEQILQALQ 720

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            +G DY Q    + P     ++ 
Sbjct: 721 LIGVDYAQGYWFSRPQPIADLVA 743


>gi|78485433|ref|YP_391358.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363719|gb|ABB41684.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 667

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 195/420 (46%), Gaps = 8/420 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A QD+LTG+ NR  F   L   +       +    ++ ID+D++K IND LG   GD+ 
Sbjct: 242 LAEQDSLTGLTNRYKFYRLLEKRI---HAYPDKMFALLFIDLDRFKIINDTLGHQTGDEY 298

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +R+ +     DI++R  G+ F + L S ++  +I     ++ K ++  + +  + 
Sbjct: 299 LKVIGQRLLKNTSSQDIVSRFGGDEFVLCLESASSKTQIQTQTESLLKDLSKQVEVNGQN 358

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKE 709
           +  +AS+G + +     T  E++K A++AMY  K +    +  ++        + +  + 
Sbjct: 359 LFTSASVGISLFPQDGRTIHELIKAADIAMYQVKSQDAVAISFYQESFDHNTLNYLSFRT 418

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  ++E  E+Y ++ P + +  ++IVG EAL +        IS ++F+ + EE   +  
Sbjct: 419 YIKNSIEAGEVYPLFQPQVDVRTQQIVGFEALARMKDETGNWISPAQFIPVIEENGWMVE 478

Query: 770 INLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  M      +   W ++Q       + +N++   +   +    +  L+++     S +
Sbjct: 479 FSSVMYRNALSEFQEWVQNQQPERLPSLSLNLSIMQINHKDFLSNLDHLLTQFKAISSCL 538

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E + +GN E    +L  ++  GI + +DDFGT  S LSYL  +P D +K + S +
Sbjct: 539 ELEITEGIFIGNIESKLPILAAIKARGIQIAIDDFGTGYSSLSYLKKLPLDRLKIDQSFV 598

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI+ +II MA  +   ++++ +  E  +  L    C  IQ      P   
Sbjct: 599 RDIDIDLNDNAIVETIIAMASKLGLEVVSEGVETEQQLSFLKAHDCHIIQGFLTGHPGPL 658


>gi|3659619|gb|AAC61687.1| diguanylate cyclase [Gluconacetobacter xylinus]
          Length = 574

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/544 (24%), Positives = 239/544 (43%), Gaps = 13/544 (2%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474
            IV   D              I   +   + G     +    H  D D FR +  +    
Sbjct: 28  LIVAITDSEGVITYVNDRFCEISQYSREELVGSTHRIVNSGYH--DADFFRDLYRTIKAG 85

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    +     RA D   +W+   I P  +  G I  Y+    +ITE   + + +   A 
Sbjct: 86  QL--WRGNICNRAKDGSLYWVATTIIPKIDRQGTITGYVASRFEITELMNTRDRLCELAE 143

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDD-NLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            D LTG+ NR  F   L   +           P + + D+D +K+INDV G   GD VL 
Sbjct: 144 TDTLTGLLNRGGFNTALADEIARCREPGMTAHPALAMFDLDGFKQINDVHGHHAGDIVLR 203

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++  R+ EL    D ++RL G+ F +IL      + +  +   ++  +  PI++    ++
Sbjct: 204 AIASRLIELTHPDDPVSRLGGDEFAVILHRTLEDVSLERYMDRLQAILERPIDIETVTVS 263

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
           V  SIG         T  ++ KNA++AMY AK  GG   + F  +       RV I  + 
Sbjct: 264 VAGSIGAVLL-DGTDTMEDVQKNADMAMYAAKRAGGKQSQMFTRNLRERAQARVSILSEA 322

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              VE ++  + Y PI+     E+  +EAL++W HP+ G +++ +F  +  +  + +A+ 
Sbjct: 323 RCGVERNQFEVYYQPIVNCNTMEVDQIEALLRWQHPERGLLAAEDFSDVFTDAGLAQAMG 382

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             M+E   RD+  W ++   PP  + IN++  DL+ ++    ++  + +   SP    L 
Sbjct: 383 PRMIEAFRRDVCMWNEK-GQPPRQLAINLSRMDLIRDDYQRELEESLRRFNMSPDSFVLE 441

Query: 832 FSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            +E+++     E+    L  L + G  + LD+FG   ++L++L  +PF  VK + S++T 
Sbjct: 442 VTEAMLHGRRAEQGIRNLRELARAGFRIALDNFGKGITVLNHLRELPFSQVKIDQSMVTN 501

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    +L S+I M +     +  + +      + +  +  + IQ   V+S L    
Sbjct: 502 IVGNPDACMVLSSLIDMGQGFNMEVTVEGVENREQFELVKALRPERIQGFFVSSALSSQD 561

Query: 949 ILKL 952
           ILKL
Sbjct: 562 ILKL 565


>gi|158424458|ref|YP_001525750.1| putative signal transduction protein [Azorhizobium caulinodans ORS
           571]
 gi|158331347|dbj|BAF88832.1| putative signal transduction protein [Azorhizobium caulinodans ORS
           571]
          Length = 742

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 203/414 (49%), Gaps = 13/414 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A QD LTG+ NR   L +L  +L     +      +M +D+D +K IND LG A GD +
Sbjct: 305 LASQDTLTGLANRAQVLAQLQNVLMDLPPERG--VALMFVDLDSFKDINDTLGHAAGDTL 362

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L ++  R+        +  R+ G+ F  +L+   ++ ++     A+ +S+   I +   E
Sbjct: 363 LRTVGDRLSACAAPSGLAGRIGGDEFV-LLMPFAHAREVDGIVAAVFRSLEQTIAIDGAE 421

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
           + V+ASIG A          ++++ A++A+Y AKH G +    F+    R    R+ ++ 
Sbjct: 422 LGVSASIGIALAPHDATYGDDLMRRADMALYRAKHMGRSAAVRFQPHFERELQHRLTLET 481

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+E  +  +VY P + L    IVGLEAL++W+HP+ G +   EF+ +AE   +I  
Sbjct: 482 ELAEALERGQFSMVYQPQVDLETRRIVGLEALVRWNHPQRGRLLPGEFLWVAEGTRLITR 541

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I+ ++L     +  ++        I + +N++  +L    + E +  ++ +T + P R++
Sbjct: 542 IDAWVLRHACLEAKAF------GGISLAVNMSPVNLRYPGMAERILDVLRETGFPPERLE 595

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES ++ +    +  L RLR  G+ L LDDFGT  + L ++   P   +K + S + 
Sbjct: 596 IELTESAMLDSGRDVKETLDRLRAHGVRLALDDFGTGHASLLHVRNFPVTKIKIDRSFIA 655

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                    +I+  +I + +++  T+ A+ +     ++ L   G    Q    +
Sbjct: 656 NLGVERDAASIVEHVIRLGRSLGITLTAEGVDNLEQVRFLRAFGAQQAQGFLFS 709


>gi|330721162|gb|EGG99281.1| hypothetical protein imdm_1302 [gamma proteobacterium IMCC2047]
          Length = 556

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/466 (22%), Positives = 195/466 (41%), Gaps = 18/466 (3%)

Query: 502 MSNSNGDILRYIGIA-NDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTT 553
           + +    I R +GI  +DI E++   +        +   A  D LTG+ NR+ F   L +
Sbjct: 65  LRDLVHTINRMLGIIASDIEERELREQALLMNETELAYQANHDILTGLVNRRGFERHLRS 124

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L+ S  D +    +  +D+D++K IND  G   GD++L  ++  +   ++  D+LARL 
Sbjct: 125 ALESSQMD-HAEHVLCYLDLDQFKVINDTCGHIAGDELLRQVSAVLAGGIRRHDVLARLG 183

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ FGI++   +                +      E+  +V  SIG  +    +  + ++
Sbjct: 184 GDEFGILMEHCDLEHASEIANSLCSLVESYRFEWEEQRFSVGVSIGVVAINCRENDTIDL 243

Query: 674 LKNAELAMYHAKHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           LK A++A Y AK  G +    +       S     +     +  A+E     L   PI+ 
Sbjct: 244 LKKADVACYAAKAAGRHCTRLYEEGAAEFSRLHGEMRWVSKINQALEEDRFTLFAQPIVP 303

Query: 730 --LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                   +  E L++   P  G I    F+  AEE  +I  ++ +++E +   +    D
Sbjct: 304 VAHEAGVGLHYEVLLRMVDPVEGLIPPGAFLPAAEEYDLIAKLDSWVIENVLVYLHENPD 363

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
             +   +   IN++ + L      E +   + +    P +I    +E+  + N   +   
Sbjct: 364 HLDQVWL-CSINLSGQSLTQTGFLESIIERLDRYHIPPKKICFEITETAAISNLAVATKF 422

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           +  LR  G    LDDFGT  S  +YL  +  D +K +G  +          A+++SI  +
Sbjct: 423 IDGLRDKGCKFALDDFGTGLSSFAYLKNLKVDYLKIDGVFVRDMVNDPIDYAMVKSINEI 482

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                   IA+ +  E    +LT +G DY Q   ++ P+    + +
Sbjct: 483 GHVTGMQTIAEFVEDEDIRAKLTEIGVDYAQGYGISVPVDIAELAE 528


>gi|209550753|ref|YP_002282670.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536509|gb|ACI56444.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 523

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 214/456 (46%), Gaps = 22/456 (4%)

Query: 520 TEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD-------NLRPTVMVI 571
           TE + + +      A  D+LT +PNR +F  ++   L     DD       +   T+  +
Sbjct: 77  TELRAAAQAKADWTATHDHLTKLPNRYAFERKI---LSRPIKDDEDQVEEWDQNVTLFSV 133

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +KK+ND++G   GD +L+ + RRI  L    D + R  G+ F I+  +   + +  
Sbjct: 134 DLDGFKKVNDLVGHKGGDILLIEVARRICALGNA-DCVYRFGGDEFIIVAFALT-AQREE 191

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  + +++  PI++    + V AS+G+  W        +    A+LAMY AK RG NH
Sbjct: 192 RFAKLLIQAVTRPIHIDGFAVEVGASVGYDRWAEGTEPLEDAAHRADLAMYEAKSRGPNH 251

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F  +      +R  ++  L  A+ N  +   Y P+I L   ++ G EAL +W     
Sbjct: 252 YLVFEPAMQDKVAERAALETRLRAAISNKAIKPFYQPLIDLKTGQLCGFEALARWIGEDG 311

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            NI    F+ IAEE  MI A+   +L +   D ++W D      + +  N++   + D  
Sbjct: 312 INIPPPVFIDIAEETGMITALFEDLLAQACSDALTWPDH-----VMLSFNVSPVQMEDRL 366

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++S +   P R+++  +E+ ++ +P  + ++L  L   GI + LDDFGT  S 
Sbjct: 367 LTSRILKVLSASRLPPHRLEVEITENALIQDPAIAAVILDELHAAGIQIALDDFGTGYSS 426

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L    FD +K + S +      E++  I+R+++ + +++     A+ +     +  L
Sbjct: 427 LAQLARYRFDKIKIDKSFIATYRGDERQEKIVRAMLGLGRSLNIKTTAEGVEEHGQLAFL 486

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++GCD  Q       +        + +R   + +T
Sbjct: 487 LQLGCDIGQGYLFGKAMPAAEAGIFISDRNASLAST 522


>gi|254438806|ref|ZP_05052300.1| PAS fold family [Octadecabacter antarcticus 307]
 gi|198254252|gb|EDY78566.1| PAS fold family [Octadecabacter antarcticus 307]
          Length = 812

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/567 (20%), Positives = 246/567 (43%), Gaps = 21/567 (3%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +     +  +A+  +G  VW++D           +  + G+   + H     W  ++H 
Sbjct: 248 ELLKLSSKLQIAIEAAGIGVWEFDAETGLEDWDERMLGMYGITDAADHNSGDIWETHLHP 307

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D +  +         +      +FR+   D +   +    R +  S  +  R +G+  D
Sbjct: 308 DDAEATKQYAQETFREKSD-FNRDFRIVRDDGEVRHVRSLARFVRTSKSN-GRMLGVNID 365

Query: 519 IT-------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +T       E +++ E +  ++  D LTG+ NR+   + +  +LD    +D     V+ I
Sbjct: 366 VTDDYHRAQELERARELLEHDSRHDALTGLANRRLLDETMQALLDRIGDEDQ--FAVLHI 423

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K+IND LG A GD+VLV ++  +  L+    ++ R+ G+ F ++L    +  ++ 
Sbjct: 424 DLDHFKQINDTLGHAAGDNVLVRVSENLRGLVGPRGLVCRIGGDEFFVLLEHFADEAEVH 483

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +   +A P+   ++  T   S+G A      + +SE+  NA++A+Y AK  G + 
Sbjct: 484 QLCQDIIDQMAQPMFGYDQAKTFGLSLGCALGLGDVVDASEVFINADIALYVAKSDGRSC 543

Query: 692 VESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + F        ++       L +A+ + ++   + P        +VG EAL++W  P  
Sbjct: 544 FKVFAPGLRAVTQIDTHAHHNLRVALTSGQIICHFQPQFDAKTHALVGAEALVRWMCPDR 603

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I   +F+ +A +  ++  I+ F+   +      W       PI I +NI+ + L +  
Sbjct: 604 GLIGPDDFLPLARKTGLLPRIDDFVFGFVLEAQTKWAAAGLDVPI-IALNISLERLQEPG 662

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCS 868
           L + +   +         I     E+  +    +     L +LR  G+ L ++DFG+  S
Sbjct: 663 LMQQISDRLQ----PHHAISFELLETTFLDTCDDGLSDTLNQLRAAGVRLEMNDFGSGRS 718

Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            +  L  +  D VK +  L+    +   +I IL+++  +A      ++ + I  +  +  
Sbjct: 719 SIVALQTVRPDRVKLDRMLLAPLETNPAQIFILKALARVAALEGCGVVVEGIESQKQLNA 778

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           + ++ C+ +Q   +A P+      K+L
Sbjct: 779 VLQLDCEALQGIALARPMAEAEFAKML 805



 Score = 95.0 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 20/156 (12%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN----WLPYIHINDR 461
           R    +      VW+++ +            + G+               WL  IH  DR
Sbjct: 121 RLRFLLEHLDQGVWNYNTMEKSFNVADAWRRMRGIPLSEDIDTYDTDHEKWLTEIHPEDR 180

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDIT 520
           D  + +    V   + ++  ++R    D  + W   R + M  +  G  +  +G+  DIT
Sbjct: 181 DMVQALFSGQVSGDKDKVNSQYRHWHPDGHWMWFSCRSKVMTYDDAGRPVEIVGVDTDIT 240

Query: 521 EQKKSLEGILCNA---------------FQDNLTGI 541
             KK+   +L  +                 D  TG+
Sbjct: 241 AMKKNETELLKLSSKLQIAIEAAGIGVWEFDAETGL 276


>gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
           8106]
 gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
           8106]
          Length = 753

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 236/584 (40%), Gaps = 19/584 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            ++ +   + Q +       + +  + E   + +   GD V   D         P    +
Sbjct: 173 ELLAVNTQLKQEIQHRQEIEEALIREKELAQITLESIGDGVITTDQCGKIDYLNPIAEQL 232

Query: 438 LGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWM 495
            G  + ++ G   +  L  I    R+     +   +       L     + + D   + +
Sbjct: 233 TGWKNEAVRGQSLSQVLTIIDEITREPLENPVQRVLSQADIVHLSDHTLLISRDGTEYAI 292

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                P+ +  G I   + +  D+T+ +     +   A  D+LTG+ NRQ+F  ++   +
Sbjct: 293 EDSAAPIQDRQGQIQGVVVVFRDVTQSRLLSRQLSWQASHDHLTGLLNRQAFEQKIQAAI 352

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
            L+ T++        +D+DK+K++ND  G   GD++L  +T  +   ++  D LARL G+
Sbjct: 353 TLTQTEEQ-HYVFCFLDLDKFKQVNDSCGHPAGDELLRQVTALLQTRVRAADCLARLGGD 411

Query: 616 RFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            FG++L   +  +  ++A+    + +      N  ++  ++  SIG     +     + +
Sbjct: 412 EFGLLLHGCSLCDGQEVAETVRKLIQDFR--FNWEDKVFSIGVSIGLVKIDADTSNVASI 469

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
              A+ A Y AK RG N +  +++       R        ++  A+  +  +L    II 
Sbjct: 470 FGAADAACYAAKARGRNCIHVYQIEDHELIQRQQERQWITEIDQALSKNRFHLYVQKIIP 529

Query: 730 LM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM---LERIARDIIS 784
           L          E L++        +    F+  AE   ++  I+ ++        + + +
Sbjct: 530 LQKITNPREHYEVLLRLVDETGNVVPPMAFLPTAERYDLMFKIDQWVVNNFLECYQQLKN 589

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
             + +    +++ IN++   + + E  E ++  ++        +     E+V + +  ++
Sbjct: 590 QAEDSLKNYLYM-INLSESSIKNQEFIEFLKVQLTPDKIPNQTLCFEIPETVAIASLSQT 648

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSI 902
                 L+++G S  +D FG   S L+YL ++  D +K +GS +      +   A+L S+
Sbjct: 649 IEFTQTLKQLGCSCAIDHFGGGMSSLTYLKHLSLDYLKIDGSFVKEIHRNKVEYAVLESV 708

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   +    IA+ I  +  I+ L  +G D+ Q   +  P   
Sbjct: 709 NKIGHAMGLKTIAEFIEQDTSIELLREIGVDFAQGYSINQPQPL 752


>gi|225848233|ref|YP_002728396.1| PAS fold family protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643802|gb|ACN98852.1| PAS fold family protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 1050

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 227/558 (40%), Gaps = 36/558 (6%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTIL 468
            A+  S   V   D   +       +  + G +   + G   R +   I    R+ +  + 
Sbjct: 517  AIENSDSWVLVTDENFNITYVNDTVCKLTGYSREELIGKNQRIFKSEIQP--REFYEELY 574

Query: 469  DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             + +  +       F  +  + +  ++   I P+     +I RY+ I  DIT++ +    
Sbjct: 575  KTILSGKT--FSAIFVNKKKNGELFYLKTTIYPVEIPP-NIKRYLEIGTDITKEVELQHQ 631

Query: 529  ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            I      D LT + N + F   ++  L     D      + +IDI  +  +N   G  VG
Sbjct: 632  ISKLENHDTLTNLMNLKGFFLIVSERLKSLKLDG----ILALIDIKDFTFLNKTYGFEVG 687

Query: 589  DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA--DFAIAMRKSIAMPIN 646
            + VL  +  R+  L     ++AR++ + FGI +     S  I    F   +    + PI 
Sbjct: 688  NFVLKQIASRL-NLSFPDGLIARVAADEFGIFIEINKESEAIQLNQFINKLNHIFSEPIL 746

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRV 705
              ++ I V+ + G A       +   + +NA  A+ H+K +G N V  F      +   +
Sbjct: 747  YDDKIINVSFNAGIALAPRDGDSLELLYENASTALAHSKLQGENVVVIFNKEIDDKIKNI 806

Query: 706  MIKEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
               + L   A+  +   L Y P       ++ G E L++         + + F+ + E  
Sbjct: 807  SFAKQLIERALNENLFTLYYQPFFNTKTLKLEGFEGLVRIKDKDGKIYTPNIFIDVLENS 866

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
              +     ++L+ I +    W        + I  N ++    + +    + +       +
Sbjct: 867  KYLMDYEKWLLQEITQKARKWH-------VPISFNASANSFKNKDYINYLSS------IN 913

Query: 825  PS-RIKLSFSESVVMGNPERSRLLLGRLR---KIGISLTLDDFGTKCSLLSYLGYIPFDT 880
            P+  + +  +E V+M NPE ++ LL +++    +   + +DDFG + S L Y+  +P D 
Sbjct: 914  PNLNLIMEITERVLMINPEDTKELLSKIKKETAL--KIAVDDFGIEYSSLKYIKDLPIDE 971

Query: 881  VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S      +     +I+++II +AK +    +A+ +  E  +K L  +GCDY+Q  
Sbjct: 972  IKIDISFTKEIVDDLKTRSIVKAIITLAKELGVKTLAEGVETEEQLKILRDLGCDYLQGY 1031

Query: 939  HVASPLGFNSILKLLKER 956
             +  P+      KL+  +
Sbjct: 1032 LLGKPMPEEEAEKLISNQ 1049



 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYE 482
               V     +  I G +   +    ++ L +I   DR+    I++  +   R      E
Sbjct: 239 QEKIVYINDYVTKISGYSKEEIL--SKSILDFICDKDREKVIPIVEKRLKGERFQTSHNE 296

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            RV     +   + +    +    G    ++ I  DIT+QKK        
Sbjct: 297 VRVVTKSGKILILTVFSNTIL-YKGKYSGFL-IFFDITKQKKYERLYHLL 344


>gi|319956975|ref|YP_004168238.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Nitratifractor salsuginis DSM 16511]
 gi|319419379|gb|ADV46489.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitratifractor salsuginis DSM 16511]
          Length = 779

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 149/781 (19%), Positives = 307/781 (39%), Gaps = 23/781 (2%)

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYM-VNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
                  L + + I    +L   +   +    RS   +    ++  ++ + +     L  
Sbjct: 7   QRNIKNALCKFLPICQKEILPFVVLQLFTHACRSLWFLLLSTLSLAIVLFSAGSVPALPL 66

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
           L+   S  ++I      +  S   +          +   K      S +    +L  +  
Sbjct: 67  LLWAGSILIVIILRIVYVKQSLKKMDRQRN--DQAQNQRKYLLFFLSAVVTSILLGMVIP 124

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
            +     ++    +  I +          +        L+     +FI    +   +T  
Sbjct: 125 LFIPYIHNVFLHFVLIIFIIGIAAGATAAL----FPSTLLAVTYTLFITLPLISYFLTLP 180

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
                I    +  LV+++  I      ++L      + +    E        +   ++ +
Sbjct: 181 DTYAFISALAIFMLVVVLTSIAQVTQSYMLEVYQQRKQLQMKEEELDALFTQTPTPIFYF 240

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D                 ++S        +      +  ++    + +            
Sbjct: 241 DKELKIKKYNEAFQDFFEISSE----TTLDGFDLTQLKSQEAVEMMREVLKRGEPREYDG 296

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
            +      ++ +W+  +I P+ N  G+++  I    D T + KS+E +   A  D LT +
Sbjct: 297 PY-FSTFTSKDYWLRAKIAPLFNDEGELIGGIASFQDRTLEIKSIEYLEELATLDPLTEL 355

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR+SFL  L  ++D     D L      +D++ +K IND LG   GD VL  ++R +  
Sbjct: 356 GNRRSFLQHLEHLVDEQKKGDLLSLL-FYLDLNHFKPINDTLGHHFGDLVLKEVSRLLKS 414

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTA 656
           L+    ++ RL G+ F I+      + + A      FA  + K+++  + + +  +++ A
Sbjct: 415 LVPDEAMVFRLGGDEFVILHPKCCPTEEEARKRGAVFARKINKTLSKKLIIGDYRLSIHA 474

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAV 715
           SIG    T     S E+++ A+++MY AK R          +   +     I +++    
Sbjct: 475 SIGIIVITPQMHNSDEIIRRADISMYQAKSRHLEYAFYDSSMDENQRKNFFIHQEMARND 534

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
             ++L L + P+  L   ++VG EALI+W HP  G ++ +EF+ +A E   I+ I  ++ 
Sbjct: 535 FLNQLVLYFQPLHALGCSKLVGAEALIRWHHPTLGLLTPAEFISLAIESGEIQKIGHWIR 594

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E   +    +  +   P  FI  N+ +++L  N   + +  L+ K    PS + L  +E+
Sbjct: 595 EETCKAF-IYFRENGCPLEFISTNVDARELGYNNFTKEILDLLEKYDLDPSNLVLEITEN 653

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            ++ N ER  ++   L+K G+   +DDFG   S LSYL  + F  +K + S +T    + 
Sbjct: 654 SLIDNFERYHIIFETLKKAGVRWAIDDFGIGYSSLSYLERLSFSILKIDQSFITSMVTSS 713

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI-QDSHVASPLGFNSILKL 952
               ++  I+ +A  +   ++A+ I     +++L  +  + + Q  +   PL      KL
Sbjct: 714 NAAFLIGHIVDIAAKLGYQVVAEGIESRAQMQKLLEISPNIMCQGYYFGHPLPREEFCKL 773

Query: 953 L 953
           L
Sbjct: 774 L 774


>gi|262404817|ref|ZP_06081371.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262348901|gb|EEY98040.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 745

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/563 (18%), Positives = 213/563 (37%), Gaps = 17/563 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPY 455
              +F               ++   D              +LG  +  M G  IR++   
Sbjct: 185 EDKLFQREASLRHYYDQQPVMMLTLDERNHIQQVNQFAEQLLGYPAAVMLGHHIRDFYQ- 243

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +     R +L     +     + +   R    +  W+   IRP+     +    + +
Sbjct: 244 -EPDALTP-RQMLLLPSSHVSSVWRRDVCYRHHSGKSVWVRENIRPLV----ETGTLLIV 297

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE ++  + +   A  D LT   NR  F   L   L  + +       ++ +D+D+
Sbjct: 298 GEDITETRQLADQLAYQARYDLLTHTFNRNQFELELAKALKETESQLRTH-AMLYLDLDQ 356

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K +ND  G   GD  +      + ++L F   LAR+ G+ F I+L        +     
Sbjct: 357 LKVLNDTAGHDAGDGAIQFCASMLEDVLPFKATLARMGGDEFSILLRDCTERDAVLVAQS 416

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +     +P         +T SIG      +  +   +   A+ A + AK  G N    +
Sbjct: 417 IIHALSEVPFVWEHIRFNLTCSIGIRMIDHTATSPQMVHAQADTACHAAKEEGRNRFNFY 476

Query: 696 RVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWG 750
           R       R  ++ +    +  A+ +  + L    ++     E  +  E L++  +    
Sbjct: 477 RQDDADLRRSQLEMECVNLVHDALAHQRIELFAQRVVPLHQPERQLHFEVLVRIKNAMGE 536

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+  +E   +   ++  ++E+    + +  D  +     + IN++   + + + 
Sbjct: 537 YVSPGIFVPASERYNLAHHLDRQVVEQTLSWLEARPDVVDKLG-RVSINLSGNSIGNPDF 595

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +  S  +I    +E+  M N  ++  +L +L+ +G  L LDDFG+  S  
Sbjct: 596 VTFLLQRLRISHVSCHKICFEITETAAMCNLNQAITVLSKLKALGCVLALDDFGSGLSSF 655

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL  +P D VK +G  +    +      ++RSI  + K +  T +A+ +  E  ++ L 
Sbjct: 656 GYLQKLPVDIVKIDGIFVCDMDKNEMDRLMVRSIHELTKQMGKTTVAEFVENEQILQALQ 715

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            +G DY Q    + P     ++ 
Sbjct: 716 LIGVDYAQGYLFSRPQPIADLVA 738


>gi|330465850|ref|YP_004403593.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
 gi|328808821|gb|AEB42993.1| diguanylate cyclase [Verrucosispora maris AB-18-032]
          Length = 842

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 207/446 (46%), Gaps = 15/446 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +         A  D LTG+ NR + L +    L   A D      ++++D+D++K++N
Sbjct: 383 ELRLVTARSSYEAVHDPLTGLVNRAALLSQGDQALRQLAHDH--PVALLLLDVDQFKEVN 440

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-------IADF 633
           D LG A GD +L     R+  L +  D+LARL G+ F ++L S                 
Sbjct: 441 DTLGHAAGDQLLRLTANRLTALTRPGDLLARLGGDEFALLLTSVPVLGDHTAALAYALRQ 500

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-V 692
           A  + + +A P  +    ++V  S+G     +     +E+L+ A++AMY AK  G +   
Sbjct: 501 AREVAERLAAPAEVAGVRMSVEVSVGVVVAAAGTADLTELLRRADIAMYQAKSGGDSVAT 560

Query: 693 ESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                 +  +D++ +  +L  A   + +L LV  P + L      G+EALI+W HP+ G 
Sbjct: 561 YDSTRDAASTDQLALLAELREALQTDDQLVLVLQPAVDLATGAPTGVEALIRWRHPRRGL 620

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S ++F+   E    + +   ++L++       W        I I +N++++ LLD  L 
Sbjct: 621 LSPADFIRAVENSDQLGSFTRYVLDKALTVAAGW--AGEGLDIPISVNLSARSLLDPRLP 678

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   + +      R+ L  +E+VVM   E    +L  LR +G+ L +DDFGT  S LS
Sbjct: 679 SEIAEALCRHQVPADRLVLEITETVVMSELEVIDQVLSALRAMGVQLAVDDFGTGFSSLS 738

Query: 872 YLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           +L  +  D +K + S +   G + +  AI+R  + MA  +   ++A+ +        LT 
Sbjct: 739 FLARVAVDELKVDRSFVLRMGDSPQAAAIVRYTVGMAHELGLRVVAEGVETAAQRSALTE 798

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           +GC   Q  H   P+  + I  +L  
Sbjct: 799 LGCTAAQGYHFFKPMPADKIAAVLNS 824


>gi|330980264|gb|EGH78405.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 482

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 195/457 (42%), Gaps = 12/457 (2%)

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +   P+  + G I   + + +D+T++++ +  +   A  D LTG+ NR  F  RL  +LD
Sbjct: 1   MVGTPIY-TEGVISGAVLVLHDMTQEQQYIADLSWQAAHDPLTGLVNRSEFERRLQRVLD 59

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      +M +D+D++K +ND  G A GD++L  L R + + L+  D LARL G+ 
Sbjct: 60  EDCGQGRSHC-LMFLDLDQFKLVNDTGGHAAGDELLRQLCRALPQGLRDGDTLARLGGDE 118

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           FG++L+       +            +      R    T SIG      +  +    L  
Sbjct: 119 FGVLLVDCPAETALDIAEALREAVQRLHFMWKGRPFMATVSIGLVHLGDTPASLEGSLSA 178

Query: 677 AELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           A++A Y AK RG N V+++ V       R   +   + L +A++ +   L    I  +  
Sbjct: 179 ADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHMAMDENRFCLYAQEIASIKG 238

Query: 733 --EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              E+  +E L++        +    F+  AE   ++  ++ +++  + + I   +    
Sbjct: 239 EAGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDRWVVHNVFKVIAQCQSDDR 298

Query: 791 M--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              P     IN++   + D+   E ++        SP  I    +E+  + + + +   +
Sbjct: 299 HQVPQALCAINLSGSSIGDDTFLEYLKQQFETFAVSPGMICFEITETSAIADLQSAIRFI 358

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+ +G   +LDDF +  S  +YL ++P D +K +GS +          A++  I  + 
Sbjct: 359 NELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKDMLDNPINKAMVEVINNIG 418

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 419 HVMGKRTIAEYVETPQIEAALQEMGVDFAQGYLISRP 455


>gi|118592954|ref|ZP_01550342.1| hypothetical protein SIAM614_01991 [Stappia aggregata IAM 12614]
 gi|118434488|gb|EAV41141.1| hypothetical protein SIAM614_01991 [Stappia aggregata IAM 12614]
          Length = 763

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 196/428 (45%), Gaps = 11/428 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +    +A  D+LTG   R  F    T  L L          ++ +D+D  K++ND+ G 
Sbjct: 326 EQEARYSADHDSLTGFVTRGFFHTTATKRLIL-RAHQQRDAWLVYLDVDNLKQVNDIHGH 384

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD ++V+   RI  ++   D++AR  G+ F I+        +    A  + + ++ P 
Sbjct: 385 TVGDSLVVAQAERIRSVIGPSDLVARSGGDEFLILTDRWETPEQAVREAEKLFEKLSQPF 444

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703
           +   + I  + S G A +       + +++ A++A+   K    +    +          
Sbjct: 445 DYEGKRIETSVSAGIARFPDHGQALTGLIRAADIALQRCKMEQKSSFRIYDKRMDDHLRQ 504

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R  I+ +L  A+  ++  L Y PII     ++   EALI+W HP  G +    F+ IA++
Sbjct: 505 RREIRVELDSALREAQFDLFYQPIIDARSGQLAFYEALIRWRHPFRGLVPPDLFLPIAQD 564

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++ AI  ++LER   D  SW          + +N+ S  +      + +  L+ +  +
Sbjct: 565 AGLMPAIGAWVLERALCDACSWMQTG------VSVNVCSSQIQMPGFAKKVSLLLQEYDF 618

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +E +++    ++R  + RLR +G+ L +DDFGT  S LSYL    FD +K 
Sbjct: 619 PPDRLILEITEDLMLEESAQTRETIVRLRDLGVGLAIDDFGTGFSSLSYLHKYSFDKMKI 678

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S ++   E   A  ++RS++ +A+ +    + + +  E     L   GCD++Q     
Sbjct: 679 DRSFISRIGEDEEADMVVRSMLSLARVMRMQSVGEGVETEAQRDFLVEAGCDFLQGYLFD 738

Query: 942 SPLGFNSI 949
            PL  + +
Sbjct: 739 RPLPLSEL 746


>gi|304408673|ref|ZP_07390294.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|307305502|ref|ZP_07585250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
 gi|304352494|gb|EFM16891.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS183]
 gi|306911805|gb|EFN42230.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica BA175]
          Length = 727

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/583 (20%), Positives = 236/583 (40%), Gaps = 26/583 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   E  SL   A   S  I    ++  ++V       + 
Sbjct: 150 IHLACQMADQLALTLATKHSYDKEESLSLFRCATEQSRQISMLINLHTEKVEYVNQAHSE 209

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G+    + G     L +            L         +   E +   AD   +W+ 
Sbjct: 210 ITGMPREQIIGANIRELAFF-KQHAQLAEQTLAQIFRGEIAK--GEAQFSRADGSRYWLT 266

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + T++      +   A++  LTG+ NR  F   L     
Sbjct: 267 YVLSQFITDRGNHYALVSCEEN-TDEHNYKSELERLAWRCGLTGLHNRTHFNRVLERTNK 325

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                 +L           +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 326 GLLLLVDLVG---------FKRFNDTYGHVNGDSLLIEIARRLKHFSEINKATEIARVGS 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + + MPI +   ++    ++      +S  +    L
Sbjct: 377 DEFAVLLTDDNAVYDLDYFSTRLYQHLTMPILIGREQVEPKPALAVVDI-ASVASLFAPL 435

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 436 TCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 495

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +G EALI+W HPK G +  + F+ IAE+  MI +I  ++LE   R +  W+      
Sbjct: 496 NTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEAACRQLNLWQHHNAD- 554

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   + LL   L 
Sbjct: 555 -MTMHVNVSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELA 613

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 614 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTVSRESREIVSAIIAMASALN 673

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ A+ +        L +  C   Q    +  L      + +
Sbjct: 674 ISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFI 716


>gi|218674377|ref|ZP_03524046.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 510

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 208/453 (45%), Gaps = 21/453 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-------RPTVMVIDID 574
           +  +       A  D+LT +PNR +F  +    L     +D           T+  +D+D
Sbjct: 67  RVAAQAKADWTATHDHLTKLPNRYAFERK---ALARPIKNDEAEIEEWDDNITIFSVDLD 123

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KK+ND++G   GD +L+ + RRI  L    D + R  G+ F I+  +   + +   FA
Sbjct: 124 GFKKVNDLVGHKGGDVLLIEVARRICALGNA-DCVYRFGGDEFIIVAFALT-AQREERFA 181

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + +++  PI++    + V AS+G+  W        +    A+LAMY AK RG NH   
Sbjct: 182 KLLIQAVTRPIHIDGFAVEVGASVGYDRWAEGAEPLEDAAHRADLAMYEAKSRGPNHFLV 241

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S      +R  ++  L  A+ N ++   Y P+I L   ++ G EAL +W       I
Sbjct: 242 FETSMQDKVTERAALETRLRAAIANKDIKPYYQPLIDLKTGQLCGFEALARWTGEDGIGI 301

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ IAEE  MI A+   +L +   D ++W        + +  N++   + D  L  
Sbjct: 302 PPPVFIDIAEETGMITALFEDLLAQACSDALTWPAH-----VMLSFNVSPVQMEDKLLTS 356

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++S T   P R+++  +E+ ++ +P  + ++L  L   GI + LDDFGT  S L+ 
Sbjct: 357 RILKVLSATRLPPQRLEVEITENALIQDPAIAAVILEELHAAGIQIALDDFGTGYSSLAQ 416

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L    FD +K + S +      E++  I+R+++ + +++     A+ +     +  L ++
Sbjct: 417 LARYRFDKIKIDKSFIATYRDDERQEKIVRAMLGLGRSLNIKTTAEGVEEHGQLAFLLQL 476

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           GCD  Q       +        + +R   + +T
Sbjct: 477 GCDIGQGYLFGKAMPAAEAGIFISDRNASLAST 509


>gi|319958161|gb|ADV90265.1| photoactive yellow protein/bacteriophytochrome/diguanylate
            cyclase/phosphodiesterase [Thermochromatium tepidum]
          Length = 1108

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 196/434 (45%), Gaps = 9/434 (2%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +  +S E +   A  D LTG+PNR  F + L   +  ++     R  V ++DID +K IN
Sbjct: 674  QLYRSREEMRHRALHDALTGLPNRAQFREALCEAIA-ASNHSGERFAVALMDIDHFKTIN 732

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG   GD +L +++RRI   L    ++ARL G+ F ++L    +       A  +  +
Sbjct: 733  DTLGHDKGDLLLCAVSRRIRTELPPTGLVARLGGDEFALLLRHLPDPETAYAQAERVVAA 792

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +  P+ + E   +VT+S+G     +  +   E+LK A+LA+Y AK  G N V  F     
Sbjct: 793  LRRPLVIGEDSFSVTSSLGLVMGGAD-LEPGELLKRADLALYRAKEAGRNRVGHFDSDLE 851

Query: 701  RSDRVMIKEDL----CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +  +  D         E  E+ L     I+         E L +W       +  ++
Sbjct: 852  SQAQQRLSIDRAVLGRAPQEAIEILLQPQLPIKAAQARPR-FEVLARWRTEDGRLLMPND 910

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+  AE   +I A+   ++ +  R +  W D        + IN+++ DL  ++  + +  
Sbjct: 911  FIPAAERNGVIGAVTSAVVCQAIRQLGRWLDIQGCEA-QLAINVSAADLESHDFPQRLLK 969

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
             +      P  +++  +ES+++      +  L RL   GI L+LDDFGT  S L+YL  +
Sbjct: 970  QLHAADIPPDLVEIEITESLLLRMTTSVKAALCRLSHAGIWLSLDDFGTGFSSLAYLREL 1029

Query: 877  PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P  T+K +   + G  +     ++  +I MA  I   +IA+ +     ++ L  +GCD+ 
Sbjct: 1030 PIATLKIDRDFIRGLESPNDYNLVAGMIAMAHAIGKEVIAEGVETPRQLELLAEIGCDWG 1089

Query: 936  QDSHVASPLGFNSI 949
            Q    + P+     
Sbjct: 1090 QGYLWSRPIPPEQA 1103


>gi|13488231|ref|NP_085734.1| hypothetical protein mlr9186 [Mesorhizobium loti MAFF303099]
 gi|14027983|dbj|BAB54575.1| mlr9186 [Mesorhizobium loti MAFF303099]
          Length = 653

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/442 (26%), Positives = 215/442 (48%), Gaps = 10/442 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A++ T+             +D LT +PNR SF +RL   L  +    +    +++ 
Sbjct: 204 VLAHASEFTQSFILQTESENAIRRDVLTSLPNRFSFNERLENALVDA-RQFDQHFALLLF 262

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+  + +++D  G A+ D VLV +  R+ +  +  D +ARL G  F II   +    +I 
Sbjct: 263 DLSNFDEVDDHFGRAMADAVLVEMAARLRKSTRESDGIARLEGGEFAIIAARDIRPDQIG 322

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   +  P  +  REI    S+G A   +  + ++++L+  + A++ AK  G   
Sbjct: 323 SLAKQIIDVMRAPFLIEGREIYCRTSVGIALAPTDGLDANQLLRCVDTALHRAKTLGAGS 382

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           ++ F  S   +      ++ DL  A+ N EL+L + P + L  E I G EAL++W HP  
Sbjct: 383 IQFFSASDDDAAARRNALERDLASALANDELWLAFQPFLDLGSERIRGFEALLRWQHPTL 442

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I  SEF+ IAEE  +I  I  + ++      + W        + + +N+++  L D  
Sbjct: 443 GAIPPSEFIPIAEETALIHTIGHWAVKTACLAAVHWPR-----DLRVSVNLSAVQLKDKA 497

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L +G+   +S+T   P R+++  +ESV++ + E +  LL  L  + +++ LDDFGT  S 
Sbjct: 498 LLDGIVMALSETGLEPKRLEVEITESVLISDFEDAISLLQSLSFLSVTVALDDFGTGFSS 557

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+YL  +P   +K + S +          AI+RS++ +A  +   + A+ +     +  L
Sbjct: 558 LTYLRKLPLSRLKIDRSFVQDMLADADCAAIVRSLVQLAHELRIEVTAEGVETPEQLDYL 617

Query: 928 TRMGCDYIQDSHVASPLGFNSI 949
            R+GCD  Q   +  P+  + I
Sbjct: 618 RRVGCDEAQGYLIGKPVRIDDI 639


>gi|116250781|ref|YP_766619.1| GGDEF/EAL transmembrane sensory box protein [Rhizobium leguminosarum
            bv. viciae 3841]
 gi|115255429|emb|CAK06505.1| putative GGDEF/EAL transmembrane sensory box protein [Rhizobium
            leguminosarum bv. viciae 3841]
          Length = 1046

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 243/572 (42%), Gaps = 35/572 (6%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            R  LA+      +W+             +  + GLA  +       WL  IH  DR    
Sbjct: 473  RLDLALNSYQCGIWEARPGLGGSIWNERMHELYGLAPRNGFMTEETWLGCIHPEDRALAL 532

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE---- 521
                              RV   D    ++    +      G+ ++ +GIA D TE    
Sbjct: 533  ES-ARHFKRNGDTHTLVCRVIVDDGSVRYVRSVGKVHQTGTGE-MKIMGIAFDATEDVLM 590

Query: 522  ---QKKSLE--------------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                K + +               I  N+  D LT + NR+     L + L         
Sbjct: 591  TIRLKAAKDEAVAKNIELELVKNRIEHNSLHDPLTALANRRKLDIALES-LTHDGRQQRQ 649

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
            + +++ ID+D++K IND LG A GD +LV  ++ + + ++  DI+AR+ G+ F I+ +  
Sbjct: 650  KFSILHIDLDRFKDINDTLGHAAGDAMLVHASKVLAKNVRGSDIVARIGGDEFVILALDV 709

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             +       +  + + +  PI+          SIG A      + + ++L NA++A+Y A
Sbjct: 710  GDKEMA-QLSTRIIEEMRQPIDFQGFSCRCGVSIGIALANGIHVDARKVLINADIALYRA 768

Query: 685  KHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K  G N  E F  +      +     +++   ++N E    Y P       E+ G+EAL+
Sbjct: 769  KSMGRNRFEFFNHNLQADIINTKRTADEILAGIDNGEFTAWYQPQFCARTMELTGVEALV 828

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W+HP  G ++  +F+ IA+E+ +++ ++  +LE   RD + W  +  + P  + +N+++
Sbjct: 829  RWNHPSKGLLTPDKFLRIADEINVVQMLDRIVLETALRDKVRWTARDIVVP-KVSVNVSA 887

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR-LLLGRLRKIGISLTLD 861
            + L D  L E +  L       P  I     ES+ +   E      L R++ +GI + +D
Sbjct: 888  RRLHDGSLLESLADL----HIRPGEISFELVESIFLDESEDVVSQNLERIKALGIDIEID 943

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  + +  L  +    +K +  L+       +  A++ SII +A+++    +A+ + 
Sbjct: 944  DFGTGHTSIVSLLKLKPKRLKIDRQLVQPIVNASQERALVSSIIEIARSLGVETVAEGVE 1003

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                   L  +GCD +Q    + PL F+    
Sbjct: 1004 TAAHAALLRDLGCDILQGFAFSRPLSFDDFTN 1035



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +    L+     +++ A       +    +R +LA+  S   +W+ +     +      A
Sbjct: 288 IFFATLLLGERNRNITALETREAKLLELSQRLNLALESSNIGIWELEDHSSSLLWDARAA 347

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            + G A+      +  WL  I   DR+       S            +R+   +     +
Sbjct: 348 ALHGKAAAEGSRVLDEWLAAILPEDRETAEVHFFSCSIAGAACTAQ-YRILLGNGGIRHL 406

Query: 496 IIRIRPMSNSNGDILRYIGIANDITE 521
                  +++ G + + IGI  D+T 
Sbjct: 407 RSVGAFYTDAGG-VSKTIGIVWDVTA 431


>gi|149186903|ref|ZP_01865212.1| hypothetical protein ED21_22133 [Erythrobacter sp. SD-21]
 gi|148829412|gb|EDL47854.1| hypothetical protein ED21_22133 [Erythrobacter sp. SD-21]
          Length = 498

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 213/435 (48%), Gaps = 16/435 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K L+ +   +  D LT +PNR+     +T ++       +    + ++D+D +K IND  
Sbjct: 55  KHLKKLERLSNSDALTLLPNRRGLHRDITDLMS-----PDHEVALAIVDLDGFKIINDHY 109

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD  +  + R + ++      + RL G+ + +++  E     +      + + +A 
Sbjct: 110 GHVLGDATIKEIARILADICGEEARIYRLGGDEYAVLMSGELAGTLLEGHCRRIIERLAK 169

Query: 644 PINLLEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            I +  R +T+ ASIG A       +TSSE+L+ A++AMY +K  G      F  +  RS
Sbjct: 170 SIKVDNRRLTLGASIGLARNAPGQGVTSSELLRRADVAMYASKRGGKMRCTWFNEAFDRS 229

Query: 703 DRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 + ++L  A+   E  + Y P++     ++V +E+L++W+ P   +I  + F+ +
Sbjct: 230 REQIKQLDDELRQALSLGEFRMHYQPLVDSTTRKVVSVESLLRWERPDGKSIGPNTFIPV 289

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  I L++L +   D + W        + + +NI++  L + E    +  ++ +
Sbjct: 290 AEESGLINPIGLWVLRQACCDALEW------EGVTLSVNISAAQLRNPEFPIQLGHILEE 343

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T + P R++L  +E+ ++ +P  +   L  +R  G+S+ LDDFGT  + + +L    F+ 
Sbjct: 344 TNFDPERLELEVTETCLVLDPVVAERSLNLIRGFGVSVALDDFGTGYASIGFLRQFRFEK 403

Query: 881 VKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + SL+  ++E     A++ S I MA+ ++  + A+ +  E     +   GCD IQ  
Sbjct: 404 LKLDRSLVVQASEDDSSRAMMLSSITMARAMKMEVTAEGVETEDQADMVRAAGCDQIQGW 463

Query: 939 HVASPLGFNSILKLL 953
                +  + I + L
Sbjct: 464 LYFKAMPADQIKQHL 478


>gi|311278103|ref|YP_003940334.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
 gi|308747298|gb|ADO47050.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Enterobacter cloacae SCF1]
          Length = 802

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 111/445 (24%), Positives = 205/445 (46%), Gaps = 13/445 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            Q+ S + I      D LTG+PNR      L  ++      +   P + ++ ID ++ + 
Sbjct: 364 AQEHSRQQIDSLIKFDRLTGLPNRNHMHHFLDQLILN---GEGAAPVIFLMSIDHFQDVI 420

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AV D VLV++  R+  +L+    L R  G  F  ++  E++   +   + A+   
Sbjct: 421 DSHGYAVADQVLVTVANRLSGILRPGQYLCRTEGAEFV-LIDQESDLSNMTRVSEALEHL 479

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           I+    +      +T SIG      +  +   +L  A  AM   +  GGN+ E F     
Sbjct: 480 ISASFQIDGLSFFLTLSIGI--SHEAGRSQDWLLSTAHRAMELVRKTGGNNREFFSPELS 537

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++R+++   L  AV +S L LVY P I      + G EALI+W+ P+ G +  S F+
Sbjct: 538 KAVNERLLLGAALKRAVSDSHLRLVYQPQIYANTGALYGCEALIRWNDPEHGEVPPSRFI 597

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE    + I L+++    R +  WR      P+ I +N++++   +    + + +++
Sbjct: 598 PLAEETGEYEEIGLWVIREACRQLAEWRALRIDIPV-ISVNLSARHFQNRRFPDQVLSVM 656

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +      ++ L  +ES+++ + E     +  LR  G+ L++DDFGT  S LS L   P 
Sbjct: 657 KEFGIPGEQLMLEITESMMLTDDEEVLRRIQILRNAGLGLSIDDFGTGFSGLSRLARFPV 716

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S ++G  E     ++L +II + ++    +IA+ +      + L  +GC  IQ
Sbjct: 717 TEIKIDKSFVSGYPEDNRQRSLLEAIIGIGQSFSLNVIAEGVETSEQFQLLRELGCPVIQ 776

Query: 937 DSHVASPLGFNSILKLLKE--RFPL 959
             + + P+  + I    +     P 
Sbjct: 777 GYYYSRPIPASEIPGWYRRVSHLPG 801



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 389 HVLATGYFSQGIFSDGE--RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      SQ +    +     LAV      V   D     V      A + GL+   + 
Sbjct: 122 YLALVRDASQEVIQREQSRLLLLAVDHLTKPVVVMDPEFHIVQFNRAFAGLSGLSGHDVM 181

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   +    I        +  L   + +   R + EF+      +  W+   + P+ + +
Sbjct: 182 GKRLDEALTI-PASWTREQQKLQKLL-HNNVRSREEFQAVDGSGEAVWLNASLNPIFDKD 239

Query: 507 GDILRYIGIANDITEQKKSLEGILCN 532
             +   +    D+TE++K  +     
Sbjct: 240 NQVQNLVVTFYDVTEERKIRDFESTL 265



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 14/137 (10%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-----IRNWLPYIHINDRDNF 464
           A+  +   V   D +   +        + G     + G      + + L   H     + 
Sbjct: 21  ALEQNILGVILIDELDKIIFFNSAAEELWGYRRDEVLGQNVSVLVPSSLRTAHPQYIQHN 80

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ-- 522
           R    S V      +  E  +   D    W    +    +++G    Y+ +  D +++  
Sbjct: 81  REGGQSRVEG----MSRELLLERKDGSGLWTRFALSR-FSASGK-TGYLALVRDASQEVI 134

Query: 523 KKSLEGILCNAFQDNLT 539
           ++    +L  A  D+LT
Sbjct: 135 QREQSRLLLLAV-DHLT 150


>gi|72161008|ref|YP_288665.1| diguanylate cyclase/phosphodiesterase [Thermobifida fusca YX]
 gi|71914740|gb|AAZ54642.1| diguanylate cyclase/phosphodiesterase [Thermobifida fusca YX]
          Length = 700

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/432 (24%), Positives = 212/432 (49%), Gaps = 6/432 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D LTG+ NR+  + R    L  +         ++++D+D++K++ND LG   
Sbjct: 242 KREYQANHDELTGLANRKLLILRTQEALSEAQERRQC-VGLLLLDLDRFKEVNDTLGHPT 300

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L ++  R+   ++  D++ARL G+ F ++L    ++    + A  +R ++A P+ L
Sbjct: 301 GDRLLQTVAYRLTHSVRPGDLVARLGGDEFAVLLPQVRDAASAREVAARLRVALAEPLRL 360

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVM 706
              +  + ASIG A +         +++ A++AMY AK +  G  + +       + R+ 
Sbjct: 361 DGMDFDLEASIGIALYPDHAPDFELLMQRADVAMYVAKEQRTGVELYAPHKDRNSAARLS 420

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A+  +EL + Y PI+ L DE +V LEAL++W H + G +   EF+ + E+  +
Sbjct: 421 LFGELRRALIENELEMFYQPIVALADERVVALEALVRWRHRRRGILPPEEFVPMVEQSYL 480

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +++    ++E+       W  +     + + IN+++++LLD  L E +++ + +    P 
Sbjct: 481 MRSFTHEVIEQTCAQAARWWSEGIT--LPVAINLSARELLDPTLPESIESGLRRYRLQPK 538

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  SE  ++ + E     +  L ++G+++ LDDFGT    L+ L  +P   VK +GS
Sbjct: 539 ALRLEISERALVSDAEAIIPAIMSLAELGVTVALDDFGTGYFTLARLNGLPVGEVKVDGS 598

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           ++ + + +   +    IA+ +     ++ +  +GC   Q  +   PL
Sbjct: 599 FVRHVIDDSDSKVVVEAAVDLMNTLGLRAIAEGVENAEQVEAVRALGCYAAQGRYFTPPL 658

Query: 945 GFNSILKLLKER 956
              ++   L E 
Sbjct: 659 DAGAVTGWLLEH 670


>gi|226365245|ref|YP_002783028.1| hypothetical protein ROP_58360 [Rhodococcus opacus B4]
 gi|226243735|dbj|BAH54083.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 1322

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 204/428 (47%), Gaps = 10/428 (2%)

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTI-LDLSAT----DDNLRPTVMVIDIDKYKKINDVLG 584
               A  D+LT + NR++ +  LT   L+  A          P ++++D+D+++ +ND  G
Sbjct: 886  HREARTDDLTSLANRRAIVAALTAAYLERVARPAEYAPLRGPGLLLMDLDRFRDVNDSYG 945

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              VGD +L  +  R+   ++  D+ ARL G+ F ++L +E +       A  +   +  P
Sbjct: 946  HHVGDQLLCQVADRLARSVRPGDVPARLGGDAFAVLLPAEADITAARALAGRLLDVLREP 1005

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-SD 703
             +  E    V A IG A          ++L  A +AMY AK                  D
Sbjct: 1006 FHFDEFTFHVEARIGLALCPQHCTNPEDLLHRAGVAMYRAKFAHPPIAVYDATEYQHGID 1065

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                  +L  A+   EL   Y P +   D ++  +EAL++W+HP+ G +   +F+  AE+
Sbjct: 1066 ERQSVAELRTAIAGGELTCYYQPKVSACDGQVHSVEALVRWEHPRHGLLLPDQFLPHAEQ 1125

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +++ +   +LE       +W D+     + + +N++  +LLD +L   +  L+     
Sbjct: 1126 SGLMRPLTTRVLELALGQARNWLDRG--ISLTVAVNLSVTNLLDADLVAEIDRLLQDFRL 1183

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                + L  +ESV+M +  R+R ++  L+ +GI L++DD+GT  S L+YL  +  D +K 
Sbjct: 1184 PADALILEITESVLMTDYMRARRVVEALQALGIGLSIDDYGTGWSSLAYLQDLAVDELKL 1243

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +       + +AI+RS + +A ++  +++A+ +  E  ++ L R GCD  Q  +  
Sbjct: 1244 DRVFVARLASDPRSVAIVRSTVELAHSLGASLVAEGVEDEATLRALRRYGCDITQGHYHG 1303

Query: 942  SPLGFNSI 949
             PL  + +
Sbjct: 1304 RPLPADQL 1311



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 5/183 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ L  +   AF+D LTG+ NR  FLDRL   +        +   V+ +D+D +K +N
Sbjct: 334 ENRRLLLTVARQAFRDRLTGLANRALFLDRLDQAVQR-QRRGLIPIVVLCMDLDDFKTVN 392

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L+ +  R+   ++  D +ARL G+ F  ++    +       A  + ++
Sbjct: 393 DRLGHPAGDELLIRVAERLTGCMRSTDTVARLGGDEFAALVEG--SVEDALTAADRVLEA 450

Query: 641 IAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              P  +    + +  SIG    TS    +T+  +LK A+LAMY AK  GG  +  F  +
Sbjct: 451 FVPPFIIDGVVLAIRPSIGLTIATSEVMGVTTEGLLKQADLAMYAAKRCGGGCLRRFVPN 510

Query: 699 SFR 701
              
Sbjct: 511 PAA 513


>gi|163757813|ref|ZP_02164902.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
 gi|162285315|gb|EDQ35597.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
          Length = 722

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/448 (23%), Positives = 198/448 (44%), Gaps = 12/448 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A+ D +TG+ NR  +L  L   +  +    + +  ++ +D+D + +IND  G 
Sbjct: 277 QHRLAGIAYTDQITGLGNRSRYLADLEAAVAET-RSGSAQWCLLHLDLDNFFQINDAYGP 335

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD +L+ +   +  L      LAR + + F I++     + ++A  A ++ +++  P 
Sbjct: 336 VNGDKLLIMVGEEVKRLAGARAKLARPASDEFTILVDDRPTADEVAWLAESVLEALRQPF 395

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
           +L   E+    SIG          +  M  NAELA   AK  GGN    F    ++   D
Sbjct: 396 HLPCGEVHTCGSIGIVLPGDDAADADTMHLNAELARRKAKANGGNQAVFFTPELNNALQD 455

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++ ++  L  A+   EL + + P I   + ++VGLEAL +W HP+ G I    F+ IAE 
Sbjct: 456 QLELEGMLRSAIAERELEVHFQPQINPANHQLVGLEALARWTHPEKGPIPPGRFIPIAES 515

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  +   + +        WR         I +N++   L      E +++ + +   
Sbjct: 516 SGQIMDLGSLVFDLACAQAAKWRRDGFDFK-HISVNVSPMQLGQANFIEMLKSTLERHNL 574

Query: 824 SPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               I +  +ESV +  N ER   +   +  +G+ L LDDFG+  S L YL  +P + +K
Sbjct: 575 PGETICIEITESVFVDQNEERIARIFAGVHTLGLRLALDDFGSGYSSLGYLNQLPLEQLK 634

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   ++       +  +LR I+ +A+ +   I+ +      +++ +  MGCD +Q  + 
Sbjct: 635 VDRCFVSDIDTDTRKQKVLRGILELARGLGFEIVVEGTETLEEVRMVEAMGCDAVQGYYF 694

Query: 941 ASPLGFNSILKL-----LKERFPLVKNT 963
           A P   + +  +     L  R P     
Sbjct: 695 ARPSPASLVPDMVAKIALSRREPPALRA 722


>gi|288960754|ref|YP_003451094.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288913062|dbj|BAI74550.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 771

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 195/436 (44%), Gaps = 8/436 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            L+ +   A+ D LT +PNR  F + +   L  S      R  V+++D+D ++ +ND LG
Sbjct: 330 LLDDVRSLAYYDPLTKLPNRALFHEEIGRRLA-SPPPPGGRLVVLLLDLDHFQAVNDGLG 388

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L+++  R+  +   P  ++R++ + FG +L              A+      P
Sbjct: 389 HETGDRLLLAVANRLCSVFSEPQAVSRIASDMFG-VLAWLKPPADPRSLLQAIELCFVDP 447

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702
             +    I    S G+      +     +++ A +A+  AK  G   +  F  +      
Sbjct: 448 FTINGHPIDTRISAGYVLAGDGETDVDRLVRRAGMALKGAKRGGRGRILCFDSAMEAELQ 507

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ +   L  A  + +  LVY P   L D    G EAL++W  P+   +    F+ +AE
Sbjct: 508 GRLSLVSRLAEAQASGQFSLVYQPQFSLSDGTAFGSEALLRWQLPEGTWVRPDHFIPVAE 567

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  +  ++L +   + + WRD   +  + + +N++ + L D       + ++S   
Sbjct: 568 DAGHILRLGEWVLRQACLNQVRWRD-GAIGRLRMAVNVSVRQLRDGTFVRTAERILSACN 626

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I+L  +ES  M N ++   ++  LR +G S+ +DDFGT  S LS L  +P   +K
Sbjct: 627 ADPRDIELEITESQAMEN-DQVLAMVRTLRGMGFSIAIDDFGTGYSSLSRLQQLPASVLK 685

Query: 883 FNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +T      +  +I  +I+ +   +  T+IA+ +      + L  +GCD +Q    
Sbjct: 686 IDRSFVTDLGRLPESRSIAATIVKVGHELGMTVIAEGVETTEQEEILRSLGCDAVQGFLY 745

Query: 941 ASPLGFNSILKLLKER 956
           A P+  +     + +R
Sbjct: 746 ARPMPADRFEHWILDR 761


>gi|315125535|ref|YP_004067538.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas sp. SM9913]
 gi|315014048|gb|ADT67386.1| sensory box/GGDEF/EAL domain protein [Pseudoalteromonas sp. SM9913]
          Length = 850

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/575 (19%), Positives = 226/575 (39%), Gaps = 24/575 (4%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                +     R    +    D V   +     V       T+ G     M G     + 
Sbjct: 285 ELKAKVDDKNNRLEAILNNLNDAVITINQQGVIVHCNSTALTMFGYKQNEMLGLS---IN 341

Query: 455 YIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +          ++    +     +   +  +   R  D     + + +    N     +
Sbjct: 342 NLMPEPYASKHHSYMRNYERTGEAKIIGVGRQLPARKKDGTIFQIELSLTKAVNE--QSV 399

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            YIG+  DI+E+ K+ + I   A+ D +TG+ N++ F     ++L  ++ ++       +
Sbjct: 400 EYIGVVRDISEKLKAQDTIYNLAYSDPITGLKNKRWFERECRSLLQSASINNGYIYA-AL 458

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN---- 626
           +D+DK  + N   GI  G++ L+   +++   ++    L +   + F II  + +N    
Sbjct: 459 LDMDKLAQFNFKYGIEAGNEALILTAKKLSNAVQGEYKLYKSGVDSFLIISANISNDLSY 518

Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              +       +         + + ++ ++AS+G     +S+ + S M    E A+  AK
Sbjct: 519 LEQQQPSIDSKILALDNFSHKISDLDVVLSASLGSTIINASRDSYSSMFDKLEYALKQAK 578

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                      + + +       I+  L    ++ EL LV  P   + +      EAL++
Sbjct: 579 KLSPFGYYFADLDALKRYERTNKIRYLLINVDKSDELTLVLQPQF-INENTFNSAEALLR 637

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           WD  + G IS  EF+ +AEE   I  I  ++++++ + +             I +NI++K
Sbjct: 638 WDSEELGVISPGEFIPLAEESEAIIKIGDWVVDQVCKLLHEVSRAGKNT--CIAVNISAK 695

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            ++  +  E + A + K   SP  + +  +E+ ++ + E  +  +  L K G   ++DDF
Sbjct: 696 QIVAPDFKEKLLASVHKWQVSPRNLVIELTETTLVSDIELVKETMLELNKKGFRFSIDDF 755

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS----TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           GT  S LSYL  +P   +K +   + G           I+  II MA  +    +A+ + 
Sbjct: 756 GTGYSSLSYLKELPISELKIDKYFVDGIMDTDDNSSKTIVNMIIDMASALGVNSVAEGVE 815

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                  L + GC+  Q    + PL      + LK
Sbjct: 816 EPAQFNYLKQRGCNLFQGYLFSKPLPIAQWKERLK 850



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 2/149 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG-SGDIVWDWDIVRDRVTTTPDIATILG 439
           LI F     V     F +   S  +    AV   S    W++ I    +  +P++  I G
Sbjct: 142 LISFASYTAVFLQKCFLEDKSSSQQSLFSAVEAMSKVGTWEYTISTGELNYSPEVYNIYG 201

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           L         +    Y    ++   R   +    +       +F    A     W+    
Sbjct: 202 LDKHKPLTTTQAIAHYAGEKEQARIRDFFNRLQTH-GLPYCEDFEFVDAHGNKKWVRTSG 260

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEG 528
            P+ N +  +++  G   D+T + +    
Sbjct: 261 HPVFNDDHQVIKVHGAFEDVTLEYELKAK 289


>gi|149374539|ref|ZP_01892313.1| sensory box protein/GGDEF domain protein [Marinobacter algicola
           DG893]
 gi|149361242|gb|EDM49692.1| sensory box protein/GGDEF domain protein [Marinobacter algicola
           DG893]
          Length = 611

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 222/463 (47%), Gaps = 15/463 (3%)

Query: 508 DILRYIGIANDITEQKKSLEGILCN------AFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +I   I IA+ I+        +            D+LTG+ N +S  DR+  +       
Sbjct: 152 EISFVIAIADTISLINTHEAWLHSQRALEYVTRYDSLTGLSNIESLRDRIGHLASKIERR 211

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGII 620
                 ++ ID+D+ K IND LG  VGD+V+  + RR+ +L     D+LAR+ G+ + +I
Sbjct: 212 GLGSLALIWIDVDRLKSINDGLGPQVGDNVIAEVGRRLKKLSVPGKDVLARIGGDEYALI 271

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + +      +   A  +R+ I  PI L    ITV AS+G         T+ E+L+ AE A
Sbjct: 272 VRNHTMRDSLELTASRIRQEINKPIRLNGHSITVGASLGICHLPGDCETTEELLRGAEAA 331

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY+AK RG +    F  S   + R    ++ +L  A+ N  L + Y PI+   + ++  L
Sbjct: 332 MYNAKQRGRDQACFFDSSIQVTARSRFVLENELRAAISNHTLEVFYQPILSAAELKLESL 391

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G +S  EF+ IA    ++ A+   +L R+        +Q    P  I +
Sbjct: 392 EALVRWQHPQRGWLSPIEFLGIARSGGLMYAMGECVLRRVCEHWQQAHNQGITLP-EISV 450

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+A++ +   EL   ++    +     S +    +E  + G+      +L  L   G SL
Sbjct: 451 NLAAEQVSIPELPSLVRETCHEYDVPVSALHFEVTEDSIQGDFSSLNSILEELVADGASL 510

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LS L  +PF  +K + S ++     E   AI  SII +A+ +  +++A+
Sbjct: 511 SIDDFGTGYSSLSRLKSLPFSRIKIDRSFISQLPDDEDDCAITLSIIGLARGLGLSVVAE 570

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +  +   + L   GCDY+Q    + PL       L+ + FPL
Sbjct: 571 GVETKAHEQWLVEQGCDYLQGYLYSKPLP---FNALMDKFFPL 610


>gi|84386285|ref|ZP_00989313.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
 gi|84378709|gb|EAP95564.1| sensory box/GGDEF family protein [Vibrio splendidus 12B01]
          Length = 1049

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/584 (18%), Positives = 225/584 (38%), Gaps = 17/584 (2%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + V +       +F       L       ++   D              +LG    
Sbjct: 471  LFEARDVTSGKLAENKLFQREANLKLYYDKQPVMMITLDGNNRIQQVNQFAEQLLGYPLD 530

Query: 444  SMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPM 502
             + G         ++++       +     ++ RG  + +   R A+    W+   IRP+
Sbjct: 531  QLLGHRPREF---YVDENSMIPRHILLQPQHKIRGVWRRDIEYRHANGSTIWIRENIRPL 587

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              S+    + + +  DITE ++  E +   A  D LT   NR  F   L   L    +  
Sbjct: 588  VESD----QLLIVGEDITETRELSEKLEYQARYDLLTDTFNRNHFEQELQKALKEVESHM 643

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 ++ +D+D+ K +ND  G   GD  ++   + + E+L +  +LAR+ G+ F +++ 
Sbjct: 644  RTH-AMLFLDLDQLKVLNDTAGHEAGDAAIMFSAKLLEEVLPYNAVLARMGGDEFAVLMK 702

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                   +      +      P    +  + +T+SIG      +  +   +   A+ A +
Sbjct: 703  DCTERDAVNVCRSIISTMSENPFLWGDIRLNLTSSIGIRLIDHTAASPQMVHAQADAACH 762

Query: 683  HAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIVG 737
             AK  G N    +        R  ++ +    +  A+ N  L L    I+    + E + 
Sbjct: 763  AAKEEGRNRYNLYHQDDEDLRRRHLEMECVNLVHEALANDRLELFAQRILGLDKNSEKMH 822

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L++  +     IS   FM  +E   +   I+  ++ +    +    +      +   
Sbjct: 823  FEILVRIKNIHGEYISPGIFMPASERYNIAHLIDRQVVSQTLSWLEQRPEVIEELGM-CS 881

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++   + + E  E +   +  +     +I L  +E+  M N +++     R++++G  
Sbjct: 882  INLSGHSMGNREFVEFLIESLRDSSIPCHKICLEITETAAMSNMKQAIKFFTRIKELGCM 941

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
            + LDDFG+  S   YL  +P D VK +G  +      E    ++RSI  +AK +    +A
Sbjct: 942  IALDDFGSGLSSFGYLKKLPVDIVKIDGLFVRDIAVNEMDHVMVRSINDLAKQMGKHTVA 1001

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            + +     I +L  +G +Y Q   +  P     +++ L++   L
Sbjct: 1002 EFVENTQIIDKLIELGVNYAQGYIIGRPKPLAELVEELQKERTL 1045


>gi|126090173|ref|YP_001041654.1| hypothetical protein Sbal_4536 [Shewanella baltica OS155]
 gi|126174466|ref|YP_001050615.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS155]
 gi|125997671|gb|ABN61746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125999829|gb|ABN63899.1| hypothetical protein Sbal_4536 [Shewanella baltica OS155]
          Length = 727

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/583 (20%), Positives = 236/583 (40%), Gaps = 26/583 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRV-TTTPDIAT 436
           +     +   LA    ++  +   E  SL   A   S  I    ++  ++V       + 
Sbjct: 150 IHLACQMADQLALTLATKHSYDKEESLSLFRCATEQSRQISMLINLHTEKVEYVNQAHSE 209

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G+    + G     L +            L         +   E +   AD   +W+ 
Sbjct: 210 ITGMPREQIIGANIRELAFF-KQHAQLAEQTLAQIFRGEIAK--GEAQFSRADGSRYWLT 266

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             +       G+    +    + T++      +   A++  LTG+ NR  F   L     
Sbjct: 267 YLLSQFITDRGNHYALVSSEEN-TDEHNYKLELERLAWRCGLTGLHNRTHFNRVLERTNK 325

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSG 614
                 +L           +K+ ND  G   GD +L+ + RR+     +     +AR+  
Sbjct: 326 GLLLLVDLVG---------FKRFNDTYGHENGDSLLIEIARRLKHFSEINKATEIARVGS 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L  +N    +  F+  + + +AMPI +   ++    ++      +S  +    L
Sbjct: 377 DEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQVEPKPALAVVDI-ASVASLFAPL 435

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A++A+ +AK + G  ++ F  +  S   +   I+ DL  A+   +  L Y P+  L  
Sbjct: 436 TCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRGRQFELYYQPLRDLEQ 495

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +G EALI+W HPK G +  + F+ IAE+  MI +I  ++LE   R +  W+      
Sbjct: 496 NTYIGAEALIRWHHPKRGVLFPASFIDIAEQSGMINSIGSWVLEAACRQLNLWQHHNAD- 554

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++      L E +  L+++    P  + L  +E+ +MG+   +  L   L 
Sbjct: 555 -MTMHVNVSARQFFSGNLFEQVWQLLTRYRLKPKTLILEITETELMGDIRHATFLCQELA 613

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G+ L +DDFGT  S + YL   P   +K + S ++    + +   I+ +II MA  + 
Sbjct: 614 ELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLTVSRESREIVSAIIAMASALN 673

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++ A+ +        L +  C   Q    +  L      + +
Sbjct: 674 ISLTAEGVETLEQEAFLAKSFCHQAQGYLYSPALREPEFAQFI 716


>gi|85708867|ref|ZP_01039933.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
 gi|85690401|gb|EAQ30404.1| sensory box/GGDEF family protein [Erythrobacter sp. NAP1]
          Length = 696

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/545 (23%), Positives = 241/545 (44%), Gaps = 20/545 (3%)

Query: 411 VLGSGDIVWDW--DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           +  SG   W W  D        +  IA  L L    + G            DR+     L
Sbjct: 5   LERSGLG-WFWASDKDGKVTYMSSAIAERLELPLSEIIGQPLA--SVFVSADREGRTKSL 61

Query: 469 DSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              +G  +    +  R  +  +     + +  +P  N     + + G  +DIT++    E
Sbjct: 62  SLMLGAHKSFSGFAVRAEKRPEGAV--LRLSGQPSFNGK-TFVGFRGTGSDITDEYHREE 118

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D+LTG+ NR     ++ T L  +         ++++D+DK+K +ND LG + 
Sbjct: 119 ETERLAKYDSLTGLSNRHRMKHQIETTL-TAFQAAKRNCAILMLDLDKFKHVNDTLGHSA 177

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L  ++ R+   ++    + RL G+ F +++  +++   +++ A+ +   +  P +L
Sbjct: 178 GDELLRQVSDRLQRSIEVECEIGRLGGDEFQVMIPDQDDRGVLSEIAMKIITMLKQPYSL 237

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
            E    +  S+G A      +T  E+++NA+LA+Y AK+ G      F     +    R 
Sbjct: 238 DEGRAIIGCSVGIAIAPHDGVTMDEIVRNADLALYAAKNGGRGQYRFFSGELENEAIFRR 297

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++E+L  AV   +L+L Y P++    + +  LEA I W+H + G I   EF  I +   
Sbjct: 298 RLEENLGEAVREEQLFLKYEPMVDAATQTVRALEAHICWNHEQRGEIDEIEFASILDGSS 357

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  + L+ +    +   +W D      I + +N+           + +   +       
Sbjct: 358 QVGEVGLWAIREACQQASTWPDS-----IRVAVNVPVPLFTSEGFVDAVSEALEDADLPA 412

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +R++L  SE+V  G+ +    +L  L K GI LTLD+FG+  S L+YL   PFDT+K + 
Sbjct: 413 NRLELEISEAVFFGDTDVVDRVLAALFKRGIRLTLDEFGSGYSSLAYLRRAPFDTIKIDE 472

Query: 886 SLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            L+T + E       ++R+I+ +A  +E   IA  I        L   G  +++    + 
Sbjct: 473 KLVTEAEEHDSRELGLIRAIVALAGALEMDTIANGIESVELFDRLKECGVKFMEGPIYSE 532

Query: 943 PLGFN 947
           P+  +
Sbjct: 533 PVNRD 537


>gi|190893252|ref|YP_001979794.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190698531|gb|ACE92616.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 523

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 209/448 (46%), Gaps = 15/448 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD----NLRPTVMVIDIDKYKKI 579
            +       A  D+LT +PNR +F  ++      S   +    +   T+  +D+D +KK+
Sbjct: 82  AAQAKADWTATHDHLTKLPNRYAFERKILARPVKSNEAEIEEWDHNVTIFSVDLDGFKKV 141

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND++G   GD +LV + RRI  L    D + R  G+ F I+  +   + +   FA  + +
Sbjct: 142 NDLVGHKGGDVLLVEVARRICALGNA-DCVYRFGGDEFIIVAFALT-AQREERFAKLLIQ 199

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  PI++    + V AS+G+  W             A+LAMY AK RG NH   F  S 
Sbjct: 200 AVTRPIHIDGFAVEVGASVGYDRWAEGTEPLENAAHRADLAMYEAKSRGPNHYLVFETSM 259

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +R  ++  L  A+ N ++   Y P+I L   ++ G EAL +W      +I    F
Sbjct: 260 QDKVAERASLETRLRAAIANKDIKPFYQPLIDLKTGQLCGFEALARWTGEDGIHIPPPVF 319

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  MI A+   +L +   D ++W        + +  N++   + D  L   +  +
Sbjct: 320 IDIAEETGMITALFEDLLTQACSDALTWPAH-----VMLSFNVSPVQMEDKLLTSRILKV 374

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S +   P R+++  +E+ ++ +P  + ++L  L   GI + LDDFGT  S L+ L    
Sbjct: 375 LSASRLPPQRLEVEITENALIQDPAIAAVILDELHAAGIQIALDDFGTGYSSLAQLARYR 434

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +      E++  I+R+++ + +++     A+ I     +  L ++GCD  
Sbjct: 435 FDKIKIDKSFIATYRDDERQEKIVRAMLGLGRSLNIKTTAEGIEEHGQLAFLLQLGCDIG 494

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q       +        +++R   + +T
Sbjct: 495 QGYLFGKAMPAAEAGIFIRDRNANLAST 522


>gi|148358211|ref|YP_001249418.1| hypothetical protein LPC_0072 [Legionella pneumophila str. Corby]
 gi|296105565|ref|YP_003617265.1| hypothetical protein lpa_00089 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148279984|gb|ABQ54072.1| hypothetical signaling protein [Legionella pneumophila str. Corby]
 gi|295647466|gb|ADG23313.1| hypothetical protein lpa_00089 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 513

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 204/444 (45%), Gaps = 6/444 (1%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +   I +    +E      + D LT +PN++ F++ L  +L      +N    +++++ID
Sbjct: 64  VIQSILKSYTIIEHESIVRYFDPLTRLPNKELFVNYLQAVLSNIEQQENCFSFLILLNID 123

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++  IND  G   GD +L  +  ++  +L +   L RL  +RF I+L    N  +I   A
Sbjct: 124 EFHIINDAYGTPFGDQLLFIIAEKLLHILPYKAKLCRLEADRFLILLQG--NKAEILKIA 181

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVE 693
             +         L   ++ + A IG     +      ++++ A LAM  A+       + 
Sbjct: 182 DEILSMFNHVFKLNNHQVYLQARIGVTKIDNHSDNPEKLIQRASLAMRKARLDNIKIAIF 241

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   + ++ I+ +L  A+  ++L L Y P      ++IV LEAL++W HPK G + 
Sbjct: 242 ESNTEKSVNLKLNIQAELYQAITENQLVLHYQPQFCAKTKQIVALEALLRWMHPKKGLLY 301

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            SEF+ +     ++     ++L+ +    ++W  Q    P+ I +NI+            
Sbjct: 302 PSEFLDVLLCSDLLLPAGEWVLKTVCAQNVAWIKQGLR-PVSIAVNISEPQFRQPNFVPM 360

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +++KT   P  +KL  +E V++ + + +   L  +    I + LDDFGT  + LSYL
Sbjct: 361 LKKILTKTHMDPCLLKLEVTEQVMIDHLDETARKLHEIEAHNIQIILDDFGTGYASLSYL 420

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K + S +      +    I ++II +AK +    +A+ +  +     L ++G
Sbjct: 421 HQLPISKLKIDKSFIKNMLTNKNAAMITKTIILLAKGLGIKSLAEGVETKEQFDILKQLG 480

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           CD IQ  + + PL    I   L++
Sbjct: 481 CDEIQGYYFSEPLPVEKIALFLQD 504


>gi|158313974|ref|YP_001506482.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158109379|gb|ABW11576.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 729

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 197/424 (46%), Gaps = 7/424 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           D+LTG+P R+ F+   +  L        ++   +++ID+D+ + IN  LG   GD +L +
Sbjct: 191 DDLTGLPGRRHFVATASRWLGGGHRARGSVSAALILIDLDRLRDINGTLGHEHGDHMLAT 250

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+  +L+  D+LAR+ G+ F ++L    +       A  +R+++ +P+ L +  +  
Sbjct: 251 VGARLRSVLRPADLLARVDGDEFAVLLRDV-DLAGAEAVARRIREALRIPVRLDDLRVQA 309

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCL 713
             S+G A          E+++ AE AMY AK    G  V           ++ ++ DL  
Sbjct: 310 DVSVGIAHAPEHGRGILELMRRAEEAMYAAKGTHTGQRVYDPACQLGNRAQLGLRADLRE 369

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++  ++ L Y P   +    I G+EAL++W HP  G    + F+   E   ++  +   
Sbjct: 370 ALDGGQIELRYQPKAEMRSGRIRGVEALVRWRHPTGGLRPPNMFLPEMERAGLMGRLTQQ 429

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+    D   W        + + +N+ +  ++D    + ++  + +     S + +  +
Sbjct: 430 VLDIALADCARWHAAGA--ALAVSVNVPASVIVDRGFVDLVRGALERHGLPASALVVEVT 487

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E  ++   E+++  L  LR  G+ ++LDD+GT    L+YL  +P D VK +   +     
Sbjct: 488 EDGLITVLEQAQRTLSGLRDHGVRVSLDDYGTGLCSLAYLRELPADEVKLDQRFLRDIDR 547

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              A  I+RS + +A  +   I+A+ +        L    CD +Q   V+ PL    +L 
Sbjct: 548 DSSAAEIVRSTVSLAHALRLRIVAEGVETSRSWASLAAWQCDEVQGYFVSRPLAGERVLS 607

Query: 952 LLKE 955
            L+E
Sbjct: 608 WLRE 611


>gi|94498682|ref|ZP_01305233.1| hypothetical protein SKA58_11033 [Sphingomonas sp. SKA58]
 gi|94421845|gb|EAT06895.1| hypothetical protein SKA58_11033 [Sphingomonas sp. SKA58]
          Length = 583

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 115/509 (22%), Positives = 233/509 (45%), Gaps = 7/509 (1%)

Query: 455 YIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            +   D      +   +  F+   +    +E R        + M    R + + +     
Sbjct: 71  RVSPADVLPNSAWAERIREFIASGKDNAFFETRREGKLGPEYHMCTIGR-LHSQDPAQNL 129

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A D T ++   + +      D LT +PNR  F + +   L      D  +  ++ I
Sbjct: 130 LLFTATDHTNERAIEKNLRRELLADGLTALPNRTGFGEEIDDRLKNGIWPDTAQFGIIAI 189

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+ ++ ++N+ LG   GD++L+++ +R+   L+  D+LAR+ GN F I     N    + 
Sbjct: 190 DLSRFSRVNESLGPMAGDELLITVAKRLKSSLRQGDVLARIGGNDFAIFARLNNGLSDVL 249

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                ++ ++  PI L + +I V  +IG A   +      ++++ A+ A+  AK  G   
Sbjct: 250 HIVQRIQDAMGSPIRLSDLQIRVDCAIGCALSLNLDDDPDDVVRKAQAAVKIAKRTGKVE 309

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +    V      R  I+  L  A+    L L Y P+I L   EI G EAL +W+ P  GN
Sbjct: 310 IYRNGVLKEAQRRFSIESRLRDALSQGGLSLAYQPLIHLQTGEITGFEALARWNDPDLGN 369

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNEL 810
           +  +EF+ +AEE  +I ++  +     A+ +  W  +   P P+ + +N+++  +  +++
Sbjct: 370 VPPTEFIAVAEESGLITSLGRWAAYEAAQALSRWDAKYGQPLPVSVNVNVSAIQIARDDV 429

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +  +        R+    +ES ++ +P+++R  L  L+ + +S+ +DDFGT  S L
Sbjct: 430 ESMFEEALRYAGIDGRRMTAELTESAIVADPDKARKWLVALKDLDMSIAMDDFGTGFSNL 489

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L  +P D +K + S ++       ++ I+R+I+ +A+++   + A+ I  +    +L 
Sbjct: 490 ASLHSLPIDILKIDRSFVSSMLEDHDKMVIVRTILSLAESLNLKVTAEGIETQALALQLQ 549

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +GC   Q  + A P+         + R+
Sbjct: 550 NLGCWQGQGYYFARPMNEADAFDYWRARW 578


>gi|328541835|ref|YP_004301944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [polymorphum gilvum SL003B-26A1]
 gi|326411587|gb|ADZ68650.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Polymorphum gilvum SL003B-26A1]
          Length = 671

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 206/439 (46%), Gaps = 12/439 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +      +A  D LTG+ NR +F+DRL   +  +A D      + VIDID++K +ND 
Sbjct: 212 RVADARADFHARHDGLTGVLNRAAFMDRLEETVRTAAADGEA-IALHVIDIDRFKAVNDE 270

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD ++  +  R  E+++  D + R  G+ F I         +    A  + + ++
Sbjct: 271 LGPEEGDALIRLVAMRASEMIRPYDFIGRFGGDEFVIAQCGILCQRQAESMAQRLVRRLS 330

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               + +R++ ++ SIG A   +   ++ E++K A  A+   K+ G N    FR +    
Sbjct: 331 ETYAVEDRDVPISVSIGCALMPADATSARELVKKAGFALSFVKNTGRNGFSFFRDTMEEE 390

Query: 703 DRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                + +  +  A  +    L + PI+ + +  I G EAL++        +  +EF+ +
Sbjct: 391 LVRRRELERLVRLASRDRNFLLHFQPIMCVAEGRITGFEALLRLPDDTGEMVPPTEFIPV 450

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+L ++  I  +++ +  +   SW D      + I IN++        L E +   + +
Sbjct: 451 AEDLGLLPTIGGWVIRKACQSATSWPD-----DLSIAINLSPSQFAAGNLAEFVARTLEE 505

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P R++L  +ES+++ + +     L  L+ +G+S+ +DDFGT  S LSYL   PFD 
Sbjct: 506 TGLAPGRLELEITESLLLDDSDSVLRQLNDLKALGVSIVMDDFGTGYSSLSYLWRFPFDK 565

Query: 881 VKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           +K + S M G  +       IL +II + + +   +  + +   +  + +  +  D++Q 
Sbjct: 566 IKIDRSFMDGYAQSAETIQKILSTIIALGRALNMRVTIEGVETLLQARAIEGLAVDHLQG 625

Query: 938 SHVASPLGFNSIL-KLLKE 955
                P     I   LLK+
Sbjct: 626 YLFGRPQAEIEIPGNLLKD 644


>gi|310828091|ref|YP_003960448.1| putative signaling protein [Eubacterium limosum KIST612]
 gi|308739825|gb|ADO37485.1| putative signaling protein [Eubacterium limosum KIST612]
          Length = 738

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 199/437 (45%), Gaps = 13/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            Q+KS   +   A+ D++TG  N   F+      L      ++L+  ++  DIDK+K IN
Sbjct: 307 HQRKSRRELKRMAYTDDITGFSNFNRFILDSEHWL---GGKEHLQYAIVSFDIDKFKAIN 363

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   G+ +L +++  I   L   +   R++ + F ++L  +               S
Sbjct: 364 DLYGFQSGNRLLAAMSETIASHLGSKETFCRVASDDFALLLHYKTTE-----ALTDRLNS 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +   +   + +I  T S G        +T + M   A++A    K   GN +  F   + 
Sbjct: 419 LREQLACRDFDIPFTLSFGVYLVQEDHLTVNHMYDRADMARKSIKGANGNGIAYFDTVMR 478

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I+  +  A+ + +  +   P   L   + VG EAL++W HP+ G I  +EF+
Sbjct: 479 NQILRERKIENQMDEALASKQFKVYLQPKYSLKTLQPVGAEALVRWLHPEKGLIPPAEFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   +  ++ FM E I +    W DQ    P+ I +N + K L  ++  E + A++
Sbjct: 539 PLFEKNNFVIKLDFFMFESICKQQRIWMDQGLA-PLLISVNFSRKHLSHSDFAENLMAVV 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K    PS ++L  +ES V  N +    +   L   G  +++DDFGT  S L+ L  +P 
Sbjct: 598 RKYDVPPSCLELEVTESAVFDNIDVLASVFKALNDFGFKISIDDFGTGYSSLNLLKELPV 657

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +         + +   ++ S+I MA +++  ++A+ +  +  I  L ++GCD IQ
Sbjct: 658 DVLKMDKEFFNETTLSHRGEKVVESVIQMAHSLDIKVVAEGVETQEQIDFLKKIGCDIIQ 717

Query: 937 DSHVASPLGFNSILKLL 953
             + A P+       L+
Sbjct: 718 GYYFAKPMPVKDFASLV 734


>gi|302187724|ref|ZP_07264397.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 969

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 213/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL        ++   +  VM ID+D
Sbjct: 525 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQGFCSNGQ-QVIVMFIDLD 583

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       + A
Sbjct: 584 RFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFA-VLSIDTPLQTGTEIA 642

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 643 QRILTAFEQPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 702

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++  EALI+W  P   
Sbjct: 703 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNSGKLLAFEALIRWCMPDGR 762

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++ +ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 763 IVGPESFLPALEGLRLIGRLDFYMLKRVVAILAQ-PENGHWPP--VHVNCSSYSITRPAF 819

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + AL+++   +P R+ L  +E  ++ +PE++RL +  L + G+S+ LDDFG   S L
Sbjct: 820 AAEVLALLAEHNVAPERLCLELTEGAMVADPEQARLSMKLLAEHGMSVMLDDFGAGFSSL 879

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 880 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDRETLELLR 939

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 940 EIGATQAQGYYFSEPLPIE 958


>gi|312882633|ref|ZP_07742372.1| sensory box/GGDEF family protein [Vibrio caribbenthicus ATCC
            BAA-2122]
 gi|309369718|gb|EFP97231.1| sensory box/GGDEF family protein [Vibrio caribbenthicus ATCC
            BAA-2122]
          Length = 1042

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 208/572 (36%), Gaps = 15/572 (2%)

Query: 386  VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
              + + +     + ++      S        ++   D              +LG    S+
Sbjct: 473  EARDITSRKITEERLYQREANLSHYYDKQPVMMVTLDDRDRIQQVNQFAEQLLGYRLDSI 532

Query: 446  HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             G   N        D    R +L    G   G  + E   R +D    W+   I+P+   
Sbjct: 533  LGHKLNQFYV--QEDTLLPRQVLLQPSGSMTGVWRREVEYRHSDGHILWIRENIKPLI-- 588

Query: 506  NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
              +    + +  DITE K   E +   A  D LTG   R  F   L   L   A    + 
Sbjct: 589  --ETGHLLIVGEDITETKHLSEQLQYQAQHDVLTGTYGRNYFEKLLDEALKEVAACTRVH 646

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              ++ +D+D+ K +ND  G   GD  +V  +  + ++L     LAR+ G+ F I+L   +
Sbjct: 647  -AMLYLDLDQLKILNDTAGHEAGDAAIVFCSDLLYQVLPKSATLARMGGDEFAILLKDCS 705

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                     + +      P      +  +  SIG      +  +   +   A+ A   AK
Sbjct: 706  APDAKKIANLIIDSLGQTPFVWQGIQCHLRCSIGIRLIDHTADSPQMVHAQADTACQVAK 765

Query: 686  HRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMD-EEIVGLEA 740
              G      +        R   + +    +  A+ N  + L    I  L    + +  E 
Sbjct: 766  DEGRGRFSLYCYGDRELRRREEQMESVALVNNAIANQRVELFAQRIQSLSTKGDGLYFEI 825

Query: 741  LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            L +  + +   +S S FM   E   +   ++  ++ +    + +         +   IN+
Sbjct: 826  LARLRNAQGEYLSPSIFMPATERYNIAHLLDKEVVNKAVNWLEAHAALVEKLTL-CSINL 884

Query: 801  ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +   + + +  E +   ++ T     +I    +E+  + N +R+  L  RLR +G S  L
Sbjct: 885  SGHSIGNQQFIEFLVDKLTHTSIPCEKICFEVTETAAISNSDRAHQLFQRLRALGCSFAL 944

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
            DDFG+  S   YL  +P D VK +G  +           ++RSI  +AK +    +A+ +
Sbjct: 945  DDFGSGLSSFGYLKTLPVDIVKIDGIFVRDMDTNDVDQLMVRSIHKLAKQMGKKTVAEFV 1004

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 +  L+ +G DY Q   +  P     + 
Sbjct: 1005 ENRQVMDILSEIGVDYAQGYAIGRPKPLVELE 1036


>gi|93006277|ref|YP_580714.1| diguanylate cyclase/phosphodiesterase [Psychrobacter cryohalolentis
           K5]
 gi|92393955|gb|ABE75230.1| diguanylate cyclase/phosphodiesterase [Psychrobacter cryohalolentis
           K5]
          Length = 578

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/576 (19%), Positives = 241/576 (41%), Gaps = 25/576 (4%)

Query: 401 FSDGERQSLAV-LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW--LPYIH 457
            +D ++  + +     D ++  D     ++       ++G     + G         ++ 
Sbjct: 13  LADKQQLLVKLCEQYEDAIFILDANLYYLSVNATYERMIGYTEDFLLGRPLGIYAAEFLS 72

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +R      +   +  + G  + +F +           +  R +    G  + Y+G+  
Sbjct: 73  EEERS-ILVDIAEHLDSQ-GFYENDFSMPNRYGDLLDCYMTYRKIKI--GHTIYYVGMVR 128

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D++   K+ + +      D LT +PNR+ FL + + +L  S  +      ++ ++ID+Y+
Sbjct: 129 DMSAVVKNKKQVAHLLNYDQLTELPNRKVFLSQTSDLLLDSYQE----VIIVRLNIDRYR 184

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIA 636
            +  +LG    + ++     RI +L        +   G+ F ++    +++  +      
Sbjct: 185 SLASLLGPDGINSLIKKFVTRIKDLKLGCLRCFSHFGGDDFALLFE-CSDANMVRHQLDI 243

Query: 637 MRKSIAMPINLLER-----EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           + +    P  + +      E+    S+G + +  +      +L  AE A+ + K +GG+ 
Sbjct: 244 LMQMCERPFFISDNGATNTEVYCHVSVGVSYYPENDNEFIGLLTKAERALNYVKQQGGDD 303

Query: 692 VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  S     +D + ++ +L  A    +    Y P   L   +I G EAL++W HP  
Sbjct: 304 VFWYNNSLLELNADHLQLEYELKKATNEGQFIAYYQPKFALDTGDISGFEALVRWQHPIR 363

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +F+       +   +   +  +IA  +  W+         I IN  + +  + E
Sbjct: 364 GLLQPIDFIDAILSHKLSLELFSQVATQIAEQLTIWQKLGFDQ--HICINADAAEFSNPE 421

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +  L+++   +  ++ +  +ES +M      +  L  L+ +G+ L LDDFGT  + 
Sbjct: 422 FFDVVSNLLAQHQIAAHQLHIEVTESSLMKRHSNVKEQLNSLKALGVCLALDDFGTGYAS 481

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL   PFD +K + S ++  T  +   AI+ +I+ +A+ ++  +IA+ I  E     L
Sbjct: 482 LSYLQEYPFDFIKIDKSFISKITADKTQRAIVNAILALAEALDMQVIAEGIENEQQRDLL 541

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             MGC Y Q      P+       +L ++  L KN+
Sbjct: 542 LAMGCQYGQGYWFGKPMSAEVTTNMLMQQH-LSKNS 576


>gi|220934318|ref|YP_002513217.1| signal transduction protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995628|gb|ACL72230.1| signal transduction protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 571

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 183/436 (41%), Gaps = 9/436 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++ E I   A  D+LTG+ NR  F  RL   L  +         ++ ID+D++K +ND 
Sbjct: 136 RQAQEAINHLALHDSLTGLINRHGFETRLKEALAKARRQR--PSALLYIDLDQFKLVNDT 193

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GDD+L  L   +   ++  D LARL G+ FG++L               +     
Sbjct: 194 CGHQAGDDLLRQLASLLQIPVREHDTLARLGGDEFGVLLDECTLEQAEQVARRMLSIVND 253

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS---- 698
                 E    + ASIG        ++ S+++++A++A Y AK +G N V  FR      
Sbjct: 254 FRYTWGEHNFRIGASIGLTLLDDPDLSLSDVMRHADMACYAAKDKGRNRVHLFREDDRTL 313

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R   +     +  A+E     L Y  I  L  +     E L++   P    IS   F+
Sbjct: 314 MARHSEMQWTARINEALEQDRFLLYYQEIHPLKPDTAGHCEILLRMLDPSGEVISPWAFI 373

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817
             AE   ++  ++  +LE     I     +  +P      IN++   L D+     +   
Sbjct: 374 PAAERYNLMPTVDRKVLELTLPRIRQLLREGQVPKGYRWFINLSGLTLGDDAFLAHVTER 433

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P  +    +E+ V+ N   +   + R+R +G  + LDDFGT  S  SYL  IP
Sbjct: 434 LREHAIPPEALGFEITETAVIANLGNAVRFIQRMRDLGCHVALDDFGTGLSSFSYLSNIP 493

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +G  +    E     AI+ +I  +        IA+ +  E   + L ++G DY 
Sbjct: 494 ADYIKIDGGFVRDMHENEMHQAIVEAINRIGHVAGLRTIAEFVETEGVRQRLAQLGVDYA 553

Query: 936 QDSHVASPLGFNSILK 951
           Q   +A P     I +
Sbjct: 554 QGYGIARPRPLPHIAR 569


>gi|254503472|ref|ZP_05115623.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222439543|gb|EEE46222.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 689

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 212/438 (48%), Gaps = 11/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++        +  D LT +PNR+ F +RL   ++  A   +    V VID+D++K +N
Sbjct: 237 ETERLNAENERLSQTDFLTNLPNRRYFFNRLDRQIETVA-GTDAVFAVGVIDLDQFKPVN 295

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+++  R+  L      ++RL G+ FG++ +        AD A A+ +S
Sbjct: 296 DTYGHQVGDQLLMAVGDRMEALGVQDLEISRLGGDEFGLLFLGP--PETAADVAKALCES 353

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
           +  P  + E  + + AS G A +  +  T+  +   ++ A+Y++K   RG   V S    
Sbjct: 354 LQQPFKIGEISVAIGASCGIAFYPDAGTTTHMLFDRSDYALYNSKTTARGSVTVYSADHE 413

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I+  L  A   +E  + + P + L  + I+G EAL +W+ P+ G I    F+
Sbjct: 414 ARIRSERAIESALQCADIAAEFEVHFQPFVALSKQTIIGFEALARWNSPELGRIPPDVFI 473

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    I+ + + +  +  R I +  D      + +  N+++ D+  +E    +  +I
Sbjct: 474 QVAERTGQIQRLTIQLFCKAIRQIETLPDT-----LRMSFNLSAHDITSHETVSRILDII 528

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+  + P RI    +E+ V+G+ E +   L RL+  G  L LDDFGT  S L YL  +P 
Sbjct: 529 SERKFDPKRITFEITETSVIGSYEAAEACLKRLQDAGCRLALDDFGTGYSSLGYLHRLPI 588

Query: 879 DTVKFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D VK + S ++         ++ SI+ + ++++ T +A+ +     +  L ++ C + Q 
Sbjct: 589 DCVKIDRSFISCLDDPMTGGVVASILNLCRSMQITCVAEGVEEAAQVDALQQLQCRFAQG 648

Query: 938 SHVASPLGFNSILKLLKE 955
            H   P  F  I + + E
Sbjct: 649 YHFCPPKPFADIKQSIDE 666


>gi|320332724|ref|YP_004169435.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754013|gb|ADV65770.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 816

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 204/442 (46%), Gaps = 16/442 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             + +   +      D LTG+ NR +F   L   +            V+ ID+D++K++N
Sbjct: 374 ALQCAQAQLEHQTRHDALTGLLNRAAFEGTLHAAM-----QSGAPLGVLFIDLDRFKQVN 428

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L+ +  R+ + ++  D++AR  G+ F ++L    +   +   A  +  +
Sbjct: 429 DTLGHPAGDALLMLVADRLRQGVRDGDVVARQGGDEFIVLLRHVQDHADVELVAQRLLDA 488

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SS 699
           +++P+ L  R + VTASIG A +       + + K+A+LAMY AK    +        S 
Sbjct: 489 LSLPVTLEGRTLVVTASIGMALFPHDGADVTTLHKHADLAMYSAKRDRRSVRRFQAALSD 548

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ I++DL  A+E  EL L Y P++         +EAL++W HP  G +  + F+ 
Sbjct: 549 AAQERLNIEQDLRAALERDELQLHYQPVVPADGRGPCTVEALVRWQHPTLGLLLPARFLP 608

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  ++  +  ++L      + +WR     P + + +N+A++ L   +    +  L++
Sbjct: 609 IAEESDLMVGVGEWVLRAACAQLRAWRA--RWPDLRVSVNVAAQQLDAPDFAGRLTRLLA 666

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   ++L     V +     +      L   G+   +DDFGT  S +S L  +P  
Sbjct: 667 AHTLDADALELELPARVALD--PAALPQYAALAGAGVRFAIDDFGTGYSSMSRLFQVPAQ 724

Query: 880 TVKFNGSLMTGS---TEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +K + +++      +  R +   ++R++I  A+     ++A+ +      + L    CD
Sbjct: 725 VLKIDRAVIADLLPVSAGRRSSTPLVRALITFAQEAGMQVVAEGVEQPAQARLLRAWNCD 784

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q   +A P+  +++   L  
Sbjct: 785 RLQGYAIARPMPSDALDAWLAR 806


>gi|260778908|ref|ZP_05887800.1| EAL domain protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605072|gb|EEX31367.1| EAL domain protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 592

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 104/434 (23%), Positives = 197/434 (45%), Gaps = 10/434 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++        +  D LT +PN  +F   +  +      D+     ++ I +D +K +ND 
Sbjct: 153 REQAMAYKQESVTDYLTKLPNLHAFYSDIKQV----NKDNAEHFGLLHIGLDGFKNVNDR 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +LV+    I EL+     L RL G+ F +I  S +  L + +    + +   
Sbjct: 209 LGYRHGDILLVAFANHINELIGGYGKLYRLGGDEFVLIAESHDVELVLDETIEILLRHKK 268

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
              N+      +   IG A    +       +KNA+ A++ A+  G   V  F       
Sbjct: 269 TLFNVNNTSHRLGFCIGIAFARDAVDNLDVWVKNADFALFKARSEGAGSVCWFDDELLGE 328

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ ++  A+  ++  L Y P +     E+VG EAL++W HP+ G+I+ +EF+ +
Sbjct: 329 TIRQHQIETEIKNALVKNQFSLYYQPKVSATTSEVVGAEALVRWKHPQLGSITPAEFIPV 388

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  +  ++L      I  W D      + + +N+++      +L + +  ++ +
Sbjct: 389 AEKTAQIVPLGHWVLREACNQIKEWHDAG--VDLCVSVNVSNVQFDHTDLFKVICEILRE 446

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  +++  +ES +M +P+    + G+LR +GIS+ +DDFG + S L YL  +P D 
Sbjct: 447 VRLPSHLLQIEITESALMSDPDAVTDICGQLRALGISVAIDDFGVEYSCLRYLKQLPVDV 506

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +      E    +LR+I+ M  ++   +IA+ +  E  ++ L +  CD  Q  
Sbjct: 507 LKIDKCFVDECAIHEADRMLLRTIVQMGHSLNIKVIAEGVEDEQQLEVLRQENCDEYQGY 566

Query: 939 HVASPLGFNSILKL 952
             + PL       L
Sbjct: 567 LFSQPLSGKEFFSL 580


>gi|148258778|ref|YP_001243363.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410951|gb|ABQ39457.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 671

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 208/449 (46%), Gaps = 14/449 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +     A  D+LT +PNR+ F   L    + +  D   R  V +ID+D +K +ND 
Sbjct: 219 QALSDENFRLANLDSLTDLPNRRRFFSELAQAFEDAERD-GTRLAVGIIDLDGFKPVNDT 277

Query: 583 LGIAVGDDVLVSLTRRIGELLK---FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            G +VGD VL+   RRI ++         LARL G+ FG+I+  +    ++      + +
Sbjct: 278 YGHSVGDRVLIEAARRISDVCDSVGDNVHLARLGGDEFGLIVAGDPEDDELLALGRQITE 337

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I +P  L      V+ S GFA +  S   +  + + A+ A+YHAK         F    
Sbjct: 338 RIQLPYELDTAHTGVSCSTGFALYPRSATAADALYECADYALYHAKRHARGQTVIFSSEL 397

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               R    I+  L  A    E+ L + PI+        G E L +W  PK G +S S F
Sbjct: 398 EAEIRSRNVIEHLLLAADFEREMELAFQPIVDAASARTTGFEVLARWRSPKLGLVSPSAF 457

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE + +I+ +   +L +      +W +      I +  N+++ D+   +    + ++
Sbjct: 458 IPAAERIGVIRTLTRVLLVKALAAARTWPE-----DIRMSFNLSAHDICSPDGILPLISV 512

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I  +   P RI+   +E+ V  +   +   +  L+ IG  ++LDDFGT  S LS++  +P
Sbjct: 513 IHASGVPPRRIEFEITETAVTFDFVHAEQSISALKAIGCGISLDDFGTGYSSLSHVHRLP 572

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I++S+  +  ++E + + + +  +  +  L R+G DYI
Sbjct: 573 LDKLKVDRSFVHDVNANPISHKIIKSLTGLCADMEISCVVEGVETKEQLDSLRRLGADYI 632

Query: 936 QDSHVASPLGFNSILKLL-KERFPLVKNT 963
           Q  + A P+  +++L  L +ER  L + +
Sbjct: 633 QGYYFAEPMPADAVLGFLTRERQRLAEPS 661


>gi|295838675|ref|ZP_06825608.1| sensory box protein [Streptomyces sp. SPB74]
 gi|295827132|gb|EFG65261.1| sensory box protein [Streptomyces sp. SPB74]
          Length = 614

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/597 (21%), Positives = 241/597 (40%), Gaps = 70/597 (11%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D         P +   L L + S+ G     L  + +    +    L   +  RR  L  
Sbjct: 7   DETGTITAANPALHQYLALPAASLAGRPLTHLTALGLA--PHTAPALPEVLSGRRHHLVC 64

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R+ +      W  +R+  ++   G +L       D ++       +     +D LT +
Sbjct: 65  TRRIVSPRGGEVWAELRLAHLAAERGALL----TIRDTSQGHDLRARLRTAEREDPLTRL 120

Query: 542 PNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR--- 597
             R  FLDRL   L+         R  + V+ +D ++ +N   G  VGD +L ++     
Sbjct: 121 AGRAHFLDRLADTLEEHGLRGGRGRVGLCVLGLDGFRHVNTAHGHLVGDHLLRAVAARLA 180

Query: 598 ----RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               R+        +LARL G+ F +++       ++ + A  + + +  P ++  R + 
Sbjct: 181 RLAPRLAAGPGEAPVLARLGGDEFALLVRETTGPGQLGELAATVLRELGEPYDIAGRRLA 240

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           V+AS G A   + + + +E+L+    A+  AK  G      F  +          +   L
Sbjct: 241 VSASAGVAELRARETSPAELLRAVTTALGWAKAEGRGRWALFDSARSEDGAHQDLLATAL 300

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AV + E  L Y P++ L D  + G+EAL++W HP++G ++ + F+ +AE    I  + 
Sbjct: 301 RPAVRDGEFELEYQPLVALADGTLHGVEALVRWRHPRFGRLTPNRFIDVAERDGSIVELG 360

Query: 772 LFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            ++L        SW+  +    P ++ +N+  + L D+++   +  ++++T   PS ++L
Sbjct: 361 RWVLRTACAQARSWQLARPGALPPYVSVNVTVRQLWDSDVVADVADVLTETGLPPSLLQL 420

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES V+G   R    L  L  +G+ + +DDFGT  S LSYL  +P   +K +GS + G
Sbjct: 421 ELTESEVVGQTGRPLRALQELSDMGVRIAIDDFGTGYSNLSYLSRLPVSVLKLDGSFVRG 480

Query: 891 ---------------------------STEKR--------------------------IA 897
                                      ++  R                            
Sbjct: 481 FPFAVPAPEPGTPDTDTPDTAAPATATASPDRDRDRDAATVIAGGPARSTTAEGRPADEV 540

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I+ +++ +A  +  T+ A+ +      + L  MGCD  Q    + P+    I  LL+
Sbjct: 541 IVEALVGLAHRLGLTVTAECVETRSQAERLRAMGCDMGQGYLYSRPVPPERIGVLLE 597


>gi|85710774|ref|ZP_01041835.1| Signaling protein with a periplasmic amino acid-binding domain,
           GGDEF and EAL domains [Idiomarina baltica OS145]
 gi|85695178|gb|EAQ33115.1| Signaling protein with a periplasmic amino acid-binding domain,
           GGDEF and EAL domains [Idiomarina baltica OS145]
          Length = 848

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/609 (19%), Positives = 252/609 (41%), Gaps = 33/609 (5%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           A   +L N I        L  +  +I   ++   +A    ++ +    +R  + +     
Sbjct: 250 ASFIKLPNWIWYIIAALLLSTVGFIIFNRMLTRRVA--DKTRQLAVSEKRLEVILNSVDG 307

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR- 475
            ++  D+           A +L +    ++G            D + F   L  F+  + 
Sbjct: 308 CIFIKDLDLKYQYANQRCADLLQIPVEQIYGCN----------DYELFAEPLADFLTEKD 357

Query: 476 ----RGRLQYEFRVRAAD---NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
               R R +  ++ +  D    +   +     P+   +G +    GIA D++E +     
Sbjct: 358 RHVLRTRKRLAYQEQHVDPKTGEERLLWSVKVPLIGPDGHLNGLCGIATDVSEYEALKSQ 417

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +   A  D LT + NRQ+ ++ L+     S         +M IDID++K  ND  G  +G
Sbjct: 418 VNKLAKFDALTNLGNRQTLIEHLSD--RYSKHSSKSTDWLMFIDIDQFKTFNDRYGHDIG 475

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS---IAMPI 645
           D +L  +  RI    +  + + RL  + F  +  +  +  +++ F   + +    +  P 
Sbjct: 476 DQLLKQVGERIRSHCRAGEFVGRLGADEFYCLSQTLGHQSRLSGFDEWLNQLEVKLGAPF 535

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            + + ++ V+ S G     +      E +K A+L++ HAK  GG  +  F     +    
Sbjct: 536 VVDDTQLFVSFSFGVVRL-ADCKDYIEAMKAADLSVQHAKVSGGACIRFFNEDMQQEFNQ 594

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDE---EIVGLEALIQWDHPKWGNISSSEFMLI 760
              + + L  A+ + +L L Y P      E     +G EAL++W   + G +S ++F+ +
Sbjct: 595 RQLLLDALKSAITHEQLTLHYQPQYLHNGEGPARCIGFEALLRWYDDEHGQVSPADFIPL 654

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   ++  ++  ++ ++  D+ +     +     + IN+++  L  ++    ++  ++ 
Sbjct: 655 AESNGLMSQLHFVVMNQVMADMDNLSTCFDHDDWIVAINVSASQLRASDFLSDLKHRVAT 714

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +ESV++ + +    L+  +  IGI   LDDFGT  S L YL  +P   
Sbjct: 715 EPRLARHLELEVTESVLIEDIDGIAQLMREISSIGIQFALDDFGTGYSSLIYLKLLPLRR 774

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AI++++I +A  +    IA+ +  +   + L  MGC  +Q  
Sbjct: 775 LKIDQGFVKDLLSDRSDEAIVKTVIALADGLGLETIAEGVETKAQQQRLVAMGCKQLQGY 834

Query: 939 HVASPLGFN 947
           ++  P    
Sbjct: 835 YLGRPEPLA 843


>gi|226357073|ref|YP_002786813.1| hypothetical protein Deide_20430 [Deinococcus deserti VCD115]
 gi|226319063|gb|ACO47059.1| Conserved hypothetical protein; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 789

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 103/435 (23%), Positives = 198/435 (45%), Gaps = 8/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +++   +  +A  D LTG+ NR   ++ L   L     +      V+ +D+D+ K++N
Sbjct: 344 ELRRAHVQLAHDARHDALTGLLNRSGLVEYLRQALS---PETPAPFAVLFVDLDRMKRVN 400

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  ++RR+  +     ++AR+ G+ F +++  E     +A  A  +   
Sbjct: 401 DAHGHQTGDQMLREMSRRLLTVAPAGSVVARVGGDEFVLVVP-EQQRASVALLAAQVVAV 459

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           I+ P  L      +TAS+G A +        E+++ A++AM  AK  G N+   +     
Sbjct: 460 ISEPAALQSGTTHLTASVGVALFPGDGQHPDELVRAADMAMDGAKVEGRNNWSFYDEGAL 519

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++  L  A+   EL L Y P++ L     +G EAL++W       +S  E +
Sbjct: 520 QAAQHDTQLEALLRRALAEDELELHYQPLVDLRSGATLGFEALLRWRDTVQSPVSPPEII 579

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  + ++ L +       WR +      F+ +NI++      +    ++A +
Sbjct: 580 RVAEERGLIVPLGIWGLRQAVAQASQWRARG--KQWFVTVNISALHFAHGDFLSHVRAAL 637

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       + L  +ES ++ + + S   L  L   G+ + LDDFGT  S LSYL  +P 
Sbjct: 638 DEHDLPGEALILELTESALLEDLDSSMPDLNILTSWGVRIALDDFGTGYSSLSYLRSLPV 697

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
             VK + + +    +   A +++I  +A  +   ++A+ I     ++ +  +G D  Q  
Sbjct: 698 HLVKIDKAFVFSLQQDGHAFVKAITVLAHGLNLLVVAEGIEEAWQLEGIGALGVDLGQGF 757

Query: 939 HVASPLGFNSILKLL 953
            +  PL  +   ++L
Sbjct: 758 LLGQPLPASLAGEVL 772


>gi|126734762|ref|ZP_01750508.1| putative sensory box/GGDEF family protein [Roseobacter sp. CCS2]
 gi|126715317|gb|EBA12182.1| putative sensory box/GGDEF family protein [Roseobacter sp. CCS2]
          Length = 598

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 247/576 (42%), Gaps = 39/576 (6%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              + D  W+ D        +  I ++L +    + G  R  LP +  +          +
Sbjct: 16  AEIASDWFWESDAEHRMSYLSGRIESVLKIKIADIMGASRAKLPGVLSS--SGLWKAHFA 73

Query: 471 FVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG- 528
            +  RR    +E+      DNQ  W+ +  +P+ ++ G    Y GI +D+TE++++++  
Sbjct: 74  DLEARRPFKNFEYSFIRPTDNQELWLRVSGKPIFDAAGTFKGYRGIGHDVTEERETVQRL 133

Query: 529 ---ILCNAFQ-----------------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
                  A +                 D+LTG+ NR++F       L ++         +
Sbjct: 134 IASNAALAERNKEMSEVRRELERRVNEDSLTGLLNRRAFERDTQEALGVA----GNVIVL 189

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID+D++K +ND LG   GD VL +   R+  +      + R+ G+ F I+L       
Sbjct: 190 LHIDLDRFKWVNDTLGHPAGDIVLKTAADRLRRIASGIGPVYRMGGDEFLIVLADNAEIE 249

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A A+   +  PI +  +  +V+ASIG AS  S K +  +++ +A++A+Y AK  G
Sbjct: 250 TARWMADAILDVMEKPIAVDRQVTSVSASIGIASGISGKTSLQQLVADADIALYEAKKTG 309

Query: 689 GNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                          + R  +  ++  A+ N E+   + P I      I+G EAL +W H
Sbjct: 310 RGCTRELTPEMLGLIAARRKLASEISAAIRNDEVIPFFQPQIHDDTNMIIGAEALARWQH 369

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +    F+ +A E+ ++  I+  M+ +    +   +         + IN+++  L 
Sbjct: 370 PELGLLDPDAFLDVAAEVGVVADIDRCMMHKALYFVDRAKGVGLYLK-SVSINLSTGRLR 428

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP---ERSRLLLGRLRKIGISLTLDDF 863
           D  L + ++           ++K    E++              L  LR +G+ +  DDF
Sbjct: 429 DPNLVDDVRECWLNRDC---QLKFELLETISFDELLREPVVIENLKHLRAMGVQIEADDF 485

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + ++ L  +  D +K +  L+    +   +  ++ +I+ +A+ +E   +A+ +  +
Sbjct: 486 GSGHASITSLLEVRPDRIKIDRHLVQAAINDPVQRKVVSAILEIARALEIEALAEGVETK 545

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            D+  L  +GC+  Q    A P+   + L  L+++ 
Sbjct: 546 TDVAILRDLGCELFQGFVYAKPMPAGAFLDYLRDQQ 581


>gi|239995396|ref|ZP_04715920.1| sensory box protein [Alteromonas macleodii ATCC 27126]
          Length = 722

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/559 (21%), Positives = 221/559 (39%), Gaps = 19/559 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +         + A   S + +                  ++            ++    
Sbjct: 171 QRKAEQSFHLMASAFASSREPMLVLSPDLVITECNDAYIQLIAAPFKE-QCIGLDFNQIF 229

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                D  +  LD        ++++E +V+  + +   + I +             I   
Sbjct: 230 IAEKVDKVQLALDK-------QIRFESKVKTQNGEIKVVDISVALFETYQQTSSYLIATM 282

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+++K++   +   A  D LTG+ NR S  + ++ ++            ++ ID+D +
Sbjct: 283 RDISDRKRNEAKLRQLALHDELTGLSNRNSLRESISGLVQKEQ-----HFILVFIDLDGF 337

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD  L  +   +  +      + R  G+ F  +L ++N           
Sbjct: 338 KAINDNAGHERGDIELQRVGALLTAIFGPIGEVGRWGGDEFIAVLPNQNVEEIAERSERL 397

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + +     I +   E+ ++ASIG A +         +++ A+ AMY AK  G      + 
Sbjct: 398 ISQIEEDAITVKTSELRLSASIGIAEFPEHSDNLESLVQCADAAMYRAKELGKGQAFIYE 457

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              + S      +  DL   VEN  L         L + E+ G E L +W     G +S 
Sbjct: 458 SGLYESMTQQVSMVNDLRRTVENHLLDFYIQGKYDL-NGELKGGEVLCRWISGLHGVVSP 516

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ IAEE  +  AI L  LE     I     Q     I + +NI++  +LD E     
Sbjct: 517 AVFIPIAEEHKLDSAIGLQALEAACDYISIMESQQGD-AIPLSVNISANQMLDPEFPNQA 575

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            ++      SP  I+L  +ESV + + + +   L  LR+ G  L+LDDFG+  S LSYL 
Sbjct: 576 MSICMDNDVSPEFIELELTESVFIRDEKSALRALNTLREHGFRLSLDDFGSGFSSLSYLR 635

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              F+ VK + SL+ G  +     A+   +I M K+++  ++A+ +  E  +  + +   
Sbjct: 636 SFQFEVVKVDKSLIQGIHQDSKANALFNGLIAMLKSLQIDVVAEGVELESYLPFMEQADI 695

Query: 933 DYIQDSHVASPLGFNSILK 951
             +Q  +   P+ ++  L 
Sbjct: 696 QLMQGFYFDKPMPYDQFLA 714



 Score = 83.8 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q + AT   SQ    D E   LA+  S +  W+W+   D +       ++   +  +  G
Sbjct: 42  QSLYATLQKSQSAQKDLE---LALWASQESFWNWEAENDIMEF--RSFSLHSESVSTWSG 96

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506
            +   L  +H +D D  +      +   R R+++ FR++  D+ F W+ +R R +     
Sbjct: 97  TLIELLERVHEDDLDGLQFHWSMALHGNRDRIEFSFRLKL-DSDFQWVRLRGRVLKRGKA 155

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA 533
           G+ L  +G   DIT+Q+K+ +     A
Sbjct: 156 GEALHIVGTTKDITQQRKAEQSFHLMA 182


>gi|85711830|ref|ZP_01042886.1| Signaling protein (CHEY,EAL,GGDEF domains) [Idiomarina baltica
           OS145]
 gi|85694445|gb|EAQ32387.1| Signaling protein (CHEY,EAL,GGDEF domains) [Idiomarina baltica
           OS145]
          Length = 738

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 208/440 (47%), Gaps = 15/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     E +   A++D LTG+ NR  F  RL+ +    A   +    V ++DID +  +N
Sbjct: 305 ENANLFEELRAAAYRDPLTGVANRSEFSKRLSDL----AKQKDEHIVVSIMDIDHFSDVN 360

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VG+ +L S+  R+ E L     ++R++ + FG+I   E            + + 
Sbjct: 361 DGLGQDVGNLLLRSVALRLSEQLGPEVFISRIAADVFGLIGPEE------IISPRNLNEL 414

Query: 641 IAMPINLLEREITVTASIGF-ASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRV 697
             +P    E  I ++ + GF A+  S   +   +LK A +A+ +AK      ++     +
Sbjct: 415 FRLPYRAGEHHIPLSITCGFTAASNSEHESGKSLLKQAYIALKNAKKNSFERHNYYLPYM 474

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R+ I   L        L + Y P + L  + I+G+E+L++W       IS  EF
Sbjct: 475 EQETQRRLHIVRMLRADFAERRLEVWYQPQVCLASKRIIGVESLLRWPQRDGSFISPGEF 534

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  I  +++E   + I  + D+  +P + + +N++       +  E ++  
Sbjct: 535 IPLAEYSGLIVDIGAWVIEEACQQIRQF-DELGLPELRVAVNVSVPQFRMRDFPELVEQQ 593

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +     SP R++L  +ES+VM +P+    +L RL++ GI + +DDFG   S LSYL  +P
Sbjct: 594 LQNHNVSPDRLELEITESIVMEDPDLVADILYRLKRQGIHVAIDDFGVGFSSLSYLQKLP 653

Query: 878 FDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + + +  S E     I+ +I+ MA  +  +++A+ I  E  +     +     Q
Sbjct: 654 LDRIKIDKTFVHNSNEDSGRIIIETIVNMAHRLGMSVLAEGIELEEQVSYFKNLQVAEAQ 713

Query: 937 DSHVASPLGFNSILKLLKER 956
             H A P+    + +LL ++
Sbjct: 714 GFHFAKPMPAQRLAELLAKQ 733


>gi|254500087|ref|ZP_05112239.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222441385|gb|EEE48063.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 616

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 118/592 (19%), Positives = 232/592 (39%), Gaps = 56/592 (9%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            E  +LA+    D       V            I G  +  + G     L      D+ N
Sbjct: 20  VEGLALALASDADG-----AVMHFQWCNSAFCKITGYDAAEVIGQRGTIL-IGSSMDQGN 73

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN------------------- 504
              I++  + +       +      + + +W  +   P+S+                   
Sbjct: 74  HLIIIEKLMNWE--HFSVKALNNRKNGEQYWQRMSWTPLSDPSTGDRWWLCSLIELEAQA 131

Query: 505 ------------SNGD------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
                       ++G       + R   +  +     +  + +   A +D LTG+ NR+ 
Sbjct: 132 GQEDTVRHLERPASGREALTSYVERIGLLERENNRLFQLAKKVAKEAKEDALTGLSNRRH 191

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F     + +     D      V  ID+D++K +ND  G   GD +L+S+   +  L    
Sbjct: 192 FEVEFKSWVSNLK-DAGSDFAVFYIDLDRFKSVNDTFGHDAGDRLLISVADMLRRLTNET 250

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++AR+ G+ F ++     ++L I+  A A+ + +  P     +    +AS+G A   ++
Sbjct: 251 DLVARIGGDEFVVLRPLGQSALDISSLADAVVQEMHAPFVFEGKSTFCSASVGVAIANAN 310

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVY 724
                 ++ +A+ A+YHAK  G      F             +  DL +A EN E    +
Sbjct: 311 MDAPERVVSDADTALYHAKTNGKGRWSFFTKEMHAEAIAAKRLVSDLLIACENREFVPFF 370

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P+I      I   E L++W HP+ G +  + F+  A+++ ++K I+  +   + + +  
Sbjct: 371 QPLIDAATGSIASAEVLVRWAHPRMGLLPPAAFLETADKMGILKRIDEIVFATLPKKLAL 430

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
                   P  + IN+++  L D  L   ++ +       P R+ +   ESV +      
Sbjct: 431 IDGAGVDLP-RVSINVSTGRLADPNLIHDIKRV----GIQPKRLTIEILESVYLDRLGDV 485

Query: 845 RL-LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
               L  L+++G+++ LDDFGT  + +  L  I    +K +   +      +    ++ S
Sbjct: 486 VNWTLSELKELGVTIALDDFGTGHASVQGLLKINPAVLKIDRQFILPIVEDQTARELMAS 545

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           II + K++  +I+A+ +  E   +    MGCD +Q  +   P+       LL
Sbjct: 546 IIGIGKSLSMSIVAEGVETEAHARLARDMGCDLLQGYYFGRPMPATEFQDLL 597


>gi|119897298|ref|YP_932511.1| signaling protein [Azoarcus sp. BH72]
 gi|119669711|emb|CAL93624.1| hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 811

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 214/535 (40%), Gaps = 8/535 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               +   +   D     V        I G +   + G     L          F   + 
Sbjct: 263 VFDAASQAILVTDDQNRIVAVNRAFTEITGYSRDEVLGQNPRLLSSGRQE--PAFYAEMW 320

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +    G+ Q E   R  + +     + I  + ++ G    Y+ +  D+T ++++    
Sbjct: 321 QTLEA-SGQWQGEIWNRRQNGEIFPEWLTITAVRDAQGAARHYLAMFTDLTARRQAEARA 379

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR+ F  R     + +         V+ IDID++K +N   G   GD
Sbjct: 380 EYIAHHDILTGLPNRRLFEARFKEAAEQARRR-RCSVGVLRIDIDQFKAVNREHGDNTGD 438

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             L  + RR+   L    + AR   + F  +L   + +   +  A  +  ++        
Sbjct: 439 AFLQQIARRLQASLPRGAVAARERSDTFLALLPELDLASAASRAADDILAALGPAFRTES 498

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRSDRVMIK 708
            E+ ++ASIG A +         +L++A +A+  A+  GGN  + ++       ++    
Sbjct: 499 CEVAISASIGIALFPGDGADLDTLLRHAGIALRQARQLGGNSHQRYQAGQGGGIEQAEFG 558

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+   +L + + P++      +   EAL++W HP+ G I    F+  A    ++ 
Sbjct: 559 AELHGALTRRQLEVYFQPLVDARSGRVRAGEALLRWRHPELGLIPYRHFVATARHNGLVA 618

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A   + L         W   A   P  + +N+A + +L  +    +   ++ +  + +R+
Sbjct: 619 AFGDWALVTACNAAARWPQGAQGVPA-VTVNVALEQVLRGDFATTVDKALAASGLAATRL 677

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L   E+++  + E +   L  L K GI   +DDFG   S +  L   P   +K + +L+
Sbjct: 678 ELDLDEAILASDDEVTLATLRTLAKRGIRFAIDDFGRGLSSIPRLRRFPVQALKLDPALV 737

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            G    E   A++ +I  +A ++   ++A+ +        L+ + C + Q     
Sbjct: 738 GGVGKDEDAEAVVEAIARLAASLGIEVLARGVADPAQQAFLSALDCHFQQGPLFG 792


>gi|186472782|ref|YP_001860124.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184195114|gb|ACC73078.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 645

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 220/432 (50%), Gaps = 10/432 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  +     A  DNLTG+PNR+ FL  L   L  +A   + R  V VID+D +K++N
Sbjct: 215 ELQRLSDENSRLANLDNLTGLPNRRRFLADLD-ALFQTAQAQHARFAVGVIDLDGFKQVN 273

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD VL  + RR+ +       LARL G+ FG+++        + D   A+ ++
Sbjct: 274 DLYGHGAGDRVLEEVGRRLLDRSGPRIRLARLGGDEFGLLVTDVREPQDLRDIGAAICET 333

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
           +  P         ++ S+GFA +  + ++ +++ + A+ A+Y AK   RGG  + S    
Sbjct: 334 LRAPYAWPGATARLSGSLGFAIYPDAGVSPAQLFERADYALYFAKEHRRGGTTIFSAEHE 393

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +   +++ L  A    E+ L + PI+ ++ + +V  EAL +W+ P  G+++ S F+
Sbjct: 394 KQIRELGQVEQALRQADLEHEMTLHFQPIVDVVRDRVVSYEALARWNSPTLGSVAPSLFI 453

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    I A+ + +L ++   +       + P + +  N++++D+   E    +  +I
Sbjct: 454 KVAERSDFIHAVTVALLRKVLATMHQ-----SDPAVRVAFNLSARDIGSAEAVANITDVI 508

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   PSR+    +E+ V+ + E++   L   +++G+ ++LDDFGT  S L+ +  +P 
Sbjct: 509 RESGIEPSRLTFEVTETAVIQDFEQASASLHAFKRLGVHISLDDFGTGYSSLTCIHRLPL 568

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +        A  I+RSI+ + +++E   +A+ +  +   K L  +GC  +Q
Sbjct: 569 DKIKIDRGFLDRIDADGAAQDIVRSIVELCRSLELICVAEGVQTQAQAKVLRGLGCTAMQ 628

Query: 937 DSHVASPLGFNS 948
             +   P+ F+ 
Sbjct: 629 GFYFGMPMPFDE 640


>gi|302522076|ref|ZP_07274418.1| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB78]
 gi|302430971|gb|EFL02787.1| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB78]
          Length = 1225

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 148/828 (17%), Positives = 314/828 (37%), Gaps = 64/828 (7%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN- 213
           PG    F +  + P +  + +           +       +IG + L   +         
Sbjct: 164 PGLADLFFLLFAPPAIVGLLVLAKRPVTRAGWACLALDSWLIGGSLLTLSWSLALAHTTQ 223

Query: 214 -RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R   +          L Y  +D   +S ++ L        R     A+ +  +  L   
Sbjct: 224 FRGESVPRAAL----SLAYPLLDIALVSMVLALHFKRSSAGRFAINTAVGAFALTVLCDA 279

Query: 273 LHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           L  +   R   + G +  +G    ++L   + +      + A   + +          + 
Sbjct: 280 LFTSPLLRDSYRSGQLLDAGWFAGSLLLAYAPWVRSTRRAPAEEPVRTSPDARARTSTFA 339

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            +  Y  A +     +   +              +      +    V++ +++   ++  
Sbjct: 340 ALTPYLAAAVCTLGLLYSAVNA-----------PSVDRVVLITACTVVLALVLRQGIM-- 386

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           ++     +Q +    E     V GS D++            +P  + + G  + SM G  
Sbjct: 387 LVDNIALTQELAHKEEHFRSLVQGSSDVIMIVAPSGVLRYVSPAASGVYGREAESMLG-- 444

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                 IH  D       +  F+    G     + E R ++    +  +   +  +    
Sbjct: 445 CELASLIHPEDLGQVVHEIRRFLAADPGAEPTTRIECRFKSGCGDWLNVESTVNRLHG-- 502

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 I  + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +   
Sbjct: 503 ----GLILNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALK-GRRTGDTGV 557

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ + +
Sbjct: 558 AVLFIDLDGFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGDGS 617

Query: 627 ------SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   +I D A  +R ++++P  +  +E+ + ASIG A +  + + + E+L+NA+LA
Sbjct: 618 RDVAAREQQIKDLAERLRVALSLPYTIEGQEVRIAASIGVA-FAENGLGAGELLRNADLA 676

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G + VE +             +   L  A++  E  L++ P++ L    +  +
Sbjct: 677 MYRAKGLGKDRVELYVPQLQTEAARRTALAGRLRTALDEGEFALLHQPVVCLHTGAVDVV 736

Query: 739 EALIQWDHPKWGNISSSEFML-----IAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            A  +W   +    +  EF+        E      A+  ++L          R + +  P
Sbjct: 737 TAEARWRSAQGILFTPEEFLRGPGPGDGERGG---ALGRWLLGEAVAQAAERRGEGHTTP 793

Query: 794 IFILINIASKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNP----ERSRLLL 848
             + + + ++ LLD       ++AL+++       +++    ++ + +P    E     L
Sbjct: 794 --VSVRLGARALLDRATPLTSVEALLTRYALPAGALQI----ALRLDDPRVPLEALERRL 847

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
             LR++G+ + LD FG   + +  L  +P D +  +  L+ G   + +   I   ++ +A
Sbjct: 848 NVLRRLGVRIGLDGFGAGHATIEALRRLPVDALTLDRGLVGGVVDSARHYKITAGVLRIA 907

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++    +A+ +     +  L  +GC + Q    + PL  + + + L 
Sbjct: 908 TDLGLYTVAEGVDRAEQVTVLQALGCTHAQGLAFSGPLDEHRLRRALA 955


>gi|220933984|ref|YP_002512883.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995294|gb|ACL71896.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 706

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 137/698 (19%), Positives = 279/698 (39%), Gaps = 49/698 (7%)

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI 349
           +A    L  +  Y  M    IA    A  +L     +         +    +    L+  
Sbjct: 17  LAGRLALRIVVVYLVMGILWIALSDRALAMLVDDPVL--LTWLQTFKGWAYVLVTALLLY 74

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
             I   M +  + +  + +  L    +  V  +   +   +L   +    +        +
Sbjct: 75  GLIAWQMHVLAQANVRLEERGLHIARLNRVHAMLSAINGAILRIRHRDSLLRESC---RI 131

Query: 410 AVLGSG-DIVWDWDIVRDRVTTTPDIAT------ILGLASGSMHGPIRN----------- 451
           AV   G D+ W   +  D  T +P  +       + GL+     G               
Sbjct: 132 AVDTGGFDLAWVGLVNADARTLSPVASAGDALDCLDGLSLCIASGDPDAHPMAADLCARL 191

Query: 452 -----WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                 L  I   D  + R +   F            ++          + R   + +++
Sbjct: 192 PFVVNELSAIPPMDECHSRAVARGFRAMAVVPFFNGSQLLGVLG----FLSRQATVFDAD 247

Query: 507 -----GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
                 ++    G+   I +Q ++LE        D LTG+PNR    +R+   L  +   
Sbjct: 248 ELQLLTEVAADTGLGLMIIDQAQALERST---RYDPLTGLPNRGLLEERIGQALLRA-RH 303

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 VM +++   + + D LG   GD +   + RR+   L+  D +A L    F ++L
Sbjct: 304 HRRYIGVMALEVLGLRAVIDSLGRQQGDRLQQVVARRLLSRLREGDTVAHLGNGEFALLL 363

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                 + +++ A  + +   + +      + V  S G A +     +  E+L  A +A+
Sbjct: 364 CDLRMGMDVSEVADKLLEPFELEMGGDLPPLHVKLSAGAAVYPGDAESGPELLHCAGVAL 423

Query: 682 YH---AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +      H G     +  +     +   +  +L  A++  E++L Y PI+   D  ++G+
Sbjct: 424 HQGGAQSHAGRCVFYAREMDERVREYQALDNELQGALQRDEMHLHYQPIVNTRDGSVLGV 483

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++WD+ ++G++S   F+ +AE   +I ++  ++LE+    I  WR Q     + + +
Sbjct: 484 EALLRWDNRRFGSVSPGRFIPMAEHSGLILSLGEWVLEQACAQIAHWRAQGWNH-LHMSV 542

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGI 856
           N++++ LL       +  ++ +         + L  +E+ V+ + E+    L RL+++GI
Sbjct: 543 NLSARQLLTPGFDTQVVKVLERHGLDKDDMPLVLEVTETAVIEDMEQVSEALFRLKRLGI 602

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           ++ LDDFGT  + LSYL  +P D +K + S + G         ++R+++ +A+ ++ +++
Sbjct: 603 AVHLDDFGTGYASLSYLHRLPVDALKIDQSFVRGLGGDPVAENLIRTLVVLAERLDLSLV 662

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           A+ +  +     L R+GCD  Q    A P     I  L
Sbjct: 663 AEGVETDEQRDILRRLGCDVAQGYLFARPAPAEQIEGL 700


>gi|254506340|ref|ZP_05118483.1| FOG: EAL domain protein [Vibrio parahaemolyticus 16]
 gi|219550820|gb|EED27802.1| FOG: EAL domain protein [Vibrio parahaemolyticus 16]
          Length = 591

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 208/439 (47%), Gaps = 11/439 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K  E    ++  D LT + N  ++ + L  +       +  R  ++ I ++ +K +ND 
Sbjct: 153 RKQAEQFHRDSVTDYLTKLSNANAYNESLQRV----DKSNLGRFGLIHIGMEGFKNVNDR 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +L++    + +L++    + R  G+ F I++ S++    + +    + K   
Sbjct: 209 LGYRHGDALLIAFAHHLKDLVESKGEIFRFGGDEFVILVESKHIEETLQELVDELLKHHK 268

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
           M  N+      +T  IG A  T +K       KNA+ A+Y A+  G   V  F     S 
Sbjct: 269 MMFNIENTSHRITYCIGVAYATDAKGNMELWAKNADFALYKARTEGAGSVCWFDNELLSE 328

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ ++  A+ N++  L Y P + + +  IVG EALI+W HP+ G IS +EF+ +
Sbjct: 329 TIRQHQIETEIKDALANNQFVLQYQPKVSIKESRIVGAEALIRWLHPELGPISPAEFIPV 388

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  +  +++ +         DQ     + I IN+++      +L + +   + +
Sbjct: 389 AEKTTQIVPLGQWIIYQACAQAKQLNDQGLD--VCIAINVSTVQFAHADLFDVLCKALKQ 446

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T      +++  +ES +M +PE    +  +LR IG+++ +DDFG + S L YL  +P D 
Sbjct: 447 TKLPSHLLQVEITESTLMSDPEHITDICRQLRAIGVTIAIDDFGVEYSCLKYLKQLPIDV 506

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +     +     ++ +I+ M  ++   +IA+ +  E  +  L  +GCD  Q  
Sbjct: 507 LKIDKCFVDECSVSHSDRVLVNTIVQMGHSLGIKVIAEGVEHEEQLAVLEELGCDQYQGY 566

Query: 939 HVASPLGFNSILKL-LKER 956
             + PL +     + L+ER
Sbjct: 567 LFSQPLSYQEFSSMILQER 585


>gi|226942222|ref|YP_002797295.1| hypothetical protein Avin_00530 [Azotobacter vinelandii DJ]
 gi|226717149|gb|ACO76320.1| transmembrane protein with two C-terminal GGDEF motifs [Azotobacter
           vinelandii DJ]
          Length = 719

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 139/718 (19%), Positives = 275/718 (38%), Gaps = 76/718 (10%)

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
            NR   +   +    +    +   +  +     +S+A       +L              
Sbjct: 33  VNRRLYRAAPLPIILMLSDGLGCVLLRWEQHSPSSLA----WLGLLVGLSLWRILAFFRA 88

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG 394
                  P W   F+    +  A   +    ++  A      LI  L+    I   +A  
Sbjct: 89  PAKRQADPGWRFTFLVGAAVSGATLTQTGIFLLPLATPLQQALIHGLLAAATICASMAYA 148

Query: 395 Y-----------------FSQGIFSDGERQ------SLAVLGSGDIVWDWDIVRDR---- 427
                                  F  GE Q       + +       W  +    R    
Sbjct: 149 ASLGAFLAFALPALLPSSLYLLSFDSGELQGWGCLGLILLAALVLSAWQINRATRRNLLQ 208

Query: 428 VTTTPD---IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                           A+  ++  +   +       R      L S       R+    R
Sbjct: 209 RYQNRSLLEFEKQSRWAAARLNDELAREVQL-----RRRVEEELRSAQKALEERVDERTR 263

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              A  +                              +++        +  D +TG+   
Sbjct: 264 ALTASER-----------------------------ARREEKALRRYLSSHDPMTGLA-N 293

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           +S L R   +L            +M  ++D++K++N+ LG  + D+++  L RR+G  L+
Sbjct: 294 RSLLLRRLKLLASRPRVLGRELVLMHFNLDRFKRLNESLGHQLADEIVRELARRLGGSLR 353

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D +AR++ + F ++L ++ +  ++      +   +   +++ E E+ V+AS+G    +
Sbjct: 354 RADTVARIAVDEFAVLLDTDKSLEEVEQLGRRLLTLLRHGVSVDEHEVVVSASLGIGLLS 413

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYL 722
           ++    + +L  A +AM HAK  G N V+ +R S      +R++++  L  A+   EL +
Sbjct: 414 AAGGDPATLLCQAAMAMRHAKQLGCNTVQFYRDSLQSSGRERLLLEAQLDKALGRGELEV 473

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +      + G EAL++W HP+ G +S ++F+ +AEE   I AI  F+L       
Sbjct: 474 FYQPKLNFAANRLQGAEALVRWRHPQRGLVSPAQFIPLAEETGQIGAIGDFVLSEACSQA 533

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W     +  + + +N++   L  ++  E + A++++T      ++L  +ES +  + E
Sbjct: 534 SAWLQA-GIAGLRVAVNVSMGQLRQDDFVERVGAVLARTGLPAHLLELELTESQLSDDVE 592

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK----RIAI 898
               + G LR +G+ L +DDFGT  S L YL ++P + VK + + +            AI
Sbjct: 593 HLARVFGALRALGVRLAIDDFGTGYSSLGYLKHLPVNVVKIDQTFIRSLDGSGRGGDAAI 652

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            R+II MA ++   ++A+ +  +  ++ L   GCD IQ   +  P+    +   L E+
Sbjct: 653 TRAIIVMAHSLGLEVVAEGVEEQAQLEFLREHGCDEIQGYLIGRPVEAAILTSRLHEQ 710


>gi|67923274|ref|ZP_00516759.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67854900|gb|EAM50174.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 604

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 211/425 (49%), Gaps = 6/425 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           +QD LT +PNR  F +     L  +         VM++DI+ ++ IN   G  VGD +L+
Sbjct: 173 YQDPLTKLPNRVLFKEYFLNSLSNAKQHHK-SIAVMLLDINHFQGINKNWGYPVGDKILL 231

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  RI   L+  DI+ R   ++F I+    ++   +      +  +I   + L E+ + 
Sbjct: 232 EVAERIKASLRGSDIVCRWGDDKFMILFPKISHGNDLEKITQRLLNNIGESLQLSEKVLY 291

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DL 711
           +  S+G A +      S  +L+ AE  + + K       + + ++       ++K    L
Sbjct: 292 LEYSMGCAIYPQDGHDSKTLLRQAESRLTNHKKEMRAKNKRYNLTIDPKASKLLKAKTAL 351

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+++ EL L   P I++   EI G+EALI+W+HP+ G I   +F+ +AE+   I +I 
Sbjct: 352 EEALKHQELELYCQPQIKIRTGEISGVEALIRWNHPELGQIKPQKFIPVAEQTDSIISIG 411

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L +      +W+D    P + + +N++   L D      +++++ +T  +P  ++L 
Sbjct: 412 EWVLRQACLQNRTWQDMGL-PNLIMSVNLSPLQLKDTNFINLVESILGETKLAPQWLELE 470

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  ++ N E +  +L  LR++GI L++DDFGT  S L++L   PF T+K   S +   
Sbjct: 471 ITEKAILANTEIAHQVLQNLRQLGIHLSMDDFGTGYSCLNHLPKFPFGTLKIAQSCVQEI 530

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T   + IAI+ + I +  +++  +IA+ +     +K L  + C   Q   ++ PL +   
Sbjct: 531 TEKPENIAIISAAIALGNSLDLRVIAEGVETNKQLKLLENLDCREAQGYLLSQPLNYQEA 590

Query: 950 LKLLK 954
            + L+
Sbjct: 591 TRFLE 595


>gi|88703911|ref|ZP_01101626.1| sensory box GGDEF family protein [Congregibacter litoralis KT71]
 gi|88701738|gb|EAQ98842.1| sensory box GGDEF family protein [Congregibacter litoralis KT71]
          Length = 567

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 202/438 (46%), Gaps = 8/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S   +   A +D LTG+ NR  F + L  ++  +   +N    ++ +D+D +K +ND
Sbjct: 131 MHESYLAVKRMAERDPLTGLSNRYHFEEILKVMIATNRRLNN-SVALLALDLDDFKNVND 189

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD VL+    RI   L+  +  AR+ G+ F II+    N  +++  A  +    
Sbjct: 190 TLGHGVGDQVLIEAVNRISTCLRENEGFARMGGDEFAIIIGGVANLQEVSAIANRILGKF 249

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P      EI+   SIG A   +     ++++K A++AMY +K  G N +  +      
Sbjct: 250 TTPFTCDGVEISCGVSIGAALCPADTTAPNQLMKCADIAMYRSKQSGKNKICFYEARYQA 309

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I+ ++   +++S   L Y PI      +IVG EAL++W   K  +    EF+ 
Sbjct: 310 EFHRRVGIRNEIGSILKDSGFRLFYQPIYDAKTSKIVGTEALVRWP-EKDPSYGPDEFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  MI  +  +++    + +  W++  ++  + + INI+   L  ++L   +   I+
Sbjct: 369 IAEESRMIDGLGKWVITTAIKQLAKWQETNSL--LTMSINISPVQLEHDDLLSCLSDAIT 426

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               +P  + L  +E+    + ++    L  L + G  + LDDFG   S +++L   P D
Sbjct: 427 AAKVAPESVVLEITETAFFKHSDKISDALHALSQHGFKIALDDFGMGFSSIAHLMDYPID 486

Query: 880 TVKFNGSL-M-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S+ + + +  +R  +L  +  M + +   I+A+ I           +  D +Q 
Sbjct: 487 IVKLDKSMQIPSATGGRRQQVLAGLALMLRQLNFEIVAEGIETAAQQDNCIGLELDKLQG 546

Query: 938 SHVASPLGFNSILKLLKE 955
             +A P+  + +  LL  
Sbjct: 547 FLLARPMPASDLQTLLAA 564


>gi|116253639|ref|YP_769477.1| transmembrane GGDEF/EAL sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258287|emb|CAK09389.1| putative transmembrane GGDEF/EAL sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 510

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/450 (25%), Positives = 209/450 (46%), Gaps = 15/450 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRL----TTILDLSATDDNLRPTVMVIDIDKYK 577
           +  +       A  D+LT +PNR +F  ++        +    + +   T+  +D+D +K
Sbjct: 67  RAAAQAKADWTATHDHLTKLPNRYAFERKILSRPIEDDEAEIEEWDRNVTIFSVDLDGFK 126

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           K+ND++G   GD +L+ + RRI  L    D + R  G+ F I+  +   + +   FA  +
Sbjct: 127 KVNDLVGHKGGDVLLIEVARRICALGNA-DCVYRFGGDEFIIVAFALT-AQREERFAKLL 184

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +++  PI++    + V AS+G+  W        +    A+LAMY AK RG NH   F  
Sbjct: 185 IQAVTRPIHIDGFAVEVGASVGYDRWAEGAEPLEDAAHRADLAMYEAKSRGPNHYFVFEP 244

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S      +R  ++  L  A+ N  +   Y P+I L   ++ G EAL +W      NI   
Sbjct: 245 SMQDKVTERAALETRLRAAISNKAIKPFYQPLIDLKTGQLCGFEALARWIGDDGVNIPPP 304

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAEE  MI A+   +L +   D ++W +      + +  N++   + D  L   + 
Sbjct: 305 VFIDIAEETGMITALFEDLLTQACSDALTWPEH-----VMLSFNVSPVQMEDKLLTSRIL 359

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++S +   P R+++  +E+ ++ +P  +  +L  L   GI + LDDFGT  S L+ L  
Sbjct: 360 KVLSASRLPPQRLEVEITENALIQDPAVAAAILDELHAAGIQIALDDFGTGYSSLAQLAR 419

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             FD +K + S +      E++  I+R+++ + +++     A+ I     +  L ++GCD
Sbjct: 420 YRFDKIKIDKSFIATYRDDERQEKIVRAMLGLGRSLHIKTTAEGIEEHGQLASLLQLGCD 479

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             Q       +        + +R   + +T
Sbjct: 480 IGQGYLFGKAMPAAEAGIFISDRNASLAST 509


>gi|109899846|ref|YP_663101.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702127|gb|ABG42047.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 569

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 190/439 (43%), Gaps = 7/439 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
              S   +   A  D LTG+ NR  F + L  ++  +  D +    ++ +D+D +K +ND
Sbjct: 131 MHMSYLEVKKMAEMDPLTGLSNRYHFEETLKVMIASNKRDGS-NVALLALDLDNFKHVND 189

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD VL    +RI   L+  +  ARL G+ F IIL        + + +  +  S 
Sbjct: 190 TMGHEAGDSVLKQSVKRIRSCLRNNEGFARLGGDEFAIILGDIARVEDVNNISNRVLNSF 249

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P N+  +E     SIG A        S  +LK A++AMY AK  G N +  +      
Sbjct: 250 KQPFNIQGKEFVCGVSIGVALCPVDSGDSQALLKCADIAMYRAKQDGKNGIRFYEPHYQI 309

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I   L   +EN    L Y PI     ++++G EALI+W   +        F+ 
Sbjct: 310 EFNQRYIIHNALTNVLENDSFRLFYQPIFCAKSDKLLGFEALIRWPEAEICYTP-DVFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  +++E     + +W  +     + + INI+   L ++ L    Q  + 
Sbjct: 369 VAEQSKLIDQIGRWVIETAIAQLSTWHQRF-DENLTLSINISPVQLQNDGLLSEFQRTLE 427

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 + I L  +E+ ++ +  +    L  L + G  + LDDFG   S +++L   P D
Sbjct: 428 AQNVLANNIILEITETALIKDNSKVTHSLNILSENGFKIALDDFGMGFSSVAHLMDYPID 487

Query: 880 TVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S+      T+KR+ +  ++  M K ++  ++A+ I  +  +    +   D +Q 
Sbjct: 488 IVKLDKSMQATMQITDKRLRVFEALALMLKKLDFIVVAEGIETQNQVSLCQKFELDRLQG 547

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+  +     L   
Sbjct: 548 YLLGMPMDVSKCSAFLALH 566


>gi|134295218|ref|YP_001118953.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia vietnamiensis G4]
 gi|134138375|gb|ABO54118.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia vietnamiensis G4]
          Length = 610

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 244/549 (44%), Gaps = 20/549 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +  +      +G     +H         I   D      +L       +     
Sbjct: 63  DRELRFLYVSDASLRFIGYHRDYLHT--LTLRDLIAEQDTPALEALLARAARSGQVEKTT 120

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
              V++     + + + IR   + +  +  +   A D++  +     +      D +TG+
Sbjct: 121 LCIVKSL---TYPLDVEIRAFKSRHHGVDGFAIAAFDVSAWRALEARLTYEMHHDPMTGL 177

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  S +  L      +A +      ++++D+D Y++IN  LG   GD +L    +R+  
Sbjct: 178 DNLSSLVPALMRA-QQAADESGTCAALLLLDLDDYQRINRALGYDAGDVLLRETAKRLQA 236

Query: 602 LLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           L+   + LAR++ ++F ++L        S      A  ++ ++  P     + + ++ASI
Sbjct: 237 LMSPDEQLARVASDKFAVVLTAPDRARASSAADALARRLQAAVREPYVHQGQTVHLSASI 296

Query: 659 GFASWTSSKITSSE------MLKNAELAMYHAKHRGGN--HVESFRVSSFRSDRVMIKED 710
           G A +   +  S        +L+ A+ A+  AK  GGN     +       ++R+ ++ D
Sbjct: 297 GIALYPDERTASHRAQHHSPLLRRADHALSLAKASGGNALSFHAPVDDPADAERLKLEAD 356

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   V N E  L + PI R     +VG+EALI+W HP  G +    F+ +AE + +I  +
Sbjct: 357 LYDGVRNGEFSLHFQPITRSQSGAVVGVEALIRWRHPLHGLVPPVTFIPLAESIGLINYL 416

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L+     +++W  Q      ++ +N++ +   D    + ++  I+ T   P RI L
Sbjct: 417 GNWVLKAACMQLVAWDRQGLPLQ-YVAVNVSPQQFRDPRFTQSVREAIALTGIDPRRIVL 475

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES++M +P +++ LL  L ++GI   +DDFGT  S L+YL   P   +K + S +  
Sbjct: 476 EITESLLMHDPAQAKGLLEELTELGIRFAIDDFGTGYSSLAYLQRFPLAKLKIDRSFVEN 535

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +    AI+ +++ +A+ ++  ++A+ +  E   + LT MGC++IQ   V   L    
Sbjct: 536 LLTSRNDRAIVSAVVGLAQTLDLELVAEGVETEAQRELLTEMGCNHIQGWLVCQALPSEE 595

Query: 949 ILKLLKERF 957
           + +  + + 
Sbjct: 596 LARRFEAQQ 604


>gi|309389581|gb|ADO77461.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Halanaerobium praevalens DSM 2228]
          Length = 707

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 203/432 (46%), Gaps = 7/432 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  I   ++ D LTG+PN     + L   L+    ++ +   +  +DI     IN   
Sbjct: 282 QMLTKIKNLSYNDPLTGLPNLNFLENNLKDNLNNLKKEEKIY--LFTLDIANLSLINSSY 339

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    +++L  + +R+ ++L     +AR   + F    +++ N  +I  +A  +   ++ 
Sbjct: 340 GYQKANEILKEMYQRLSKILDKRITIAR-KNDEFIFYFVTKKNKEQIKKYAKNILNKLSK 398

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  +      +   IG       +    E+++ + LA+Y    +      +  +      
Sbjct: 399 PYEINGNLTYLKLKIGIG-INKKEDNYLELIRKSRLAVYFIDQKDQIKFFNQNMKGELVS 457

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +  ++  L  A+   E  L Y P ++  + +++G+EALI+W HP+ G IS  +F+  AEE
Sbjct: 458 KFDLESKLRQALAKDEFELYYQPQLKSENNQVIGVEALIRWYHPEEGMISPGKFIPQAEE 517

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  +  ++L+     + +W+D+     + + +NIA +  +  +  + ++ L+ +   
Sbjct: 518 NGMILKLGDWVLKEAISQLKNWQDKGYN-NLIMAVNIAPQQFMQGDFVKKIKKLLFEYQI 576

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               ++L  +E  V+ + E +  +L  L+K+G+ +++DDFGT  S L YL     + +K 
Sbjct: 577 EAQSLELEITERTVIKDIEYTIEVLNDLQKLGVQISIDDFGTGYSSLEYLNRFALNKLKI 636

Query: 884 NGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + S +  S+   + I+++II M  N+   ++A+ +  + ++  L +  C Y Q  + A P
Sbjct: 637 DKSFVHQSS--NLNIVKTIIMMGNNLNLNVVAEGVETKAELDFLIQNKCHYYQGYYFAKP 694

Query: 944 LGFNSILKLLKE 955
                + K  ++
Sbjct: 695 QNAIDVEKYFRK 706


>gi|89094347|ref|ZP_01167288.1| sensory box protein [Oceanospirillum sp. MED92]
 gi|89081406|gb|EAR60637.1| sensory box protein [Oceanospirillum sp. MED92]
          Length = 633

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 209/439 (47%), Gaps = 14/439 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  +     A  D+LT +PNR    ++LT +   S         + +ID++ +K +ND L
Sbjct: 202 RESKINRFQAEHDSLTSMPNRAYLRNKLTKLCRQSE-----PFALHLIDLNGFKDVNDTL 256

Query: 584 GIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G   GD +L ++++R+   +      I  RL G+ F I+  S  +   +   +  +  S+
Sbjct: 257 GHQAGDVLLQAVSQRLINEVDSQHGCITCRLGGDEFAILHQSYRSQYDLDQVSKKIINSL 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVS 698
                +      +  S+G   +      +S +L +A++AMY AK         +  F++ 
Sbjct: 317 ESEFYVDNHSCFIGGSVGSVVYPDHGEDASRLLTHADIAMYKAKEAAPTSKQVLFDFQMD 376

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  + R  ++ DL  A+E++EL L Y PI+ L  + +   EAL++W HP +GN+S  E +
Sbjct: 377 AEINRRQQLQRDLRTALEDNELTLAYQPILNLQSQSVDYFEALLRWKHPIYGNLSPLEVI 436

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +   +  ++++   R +  WR +     + I +NI+   +   +L   +   +
Sbjct: 437 EVAEQYGLAHQLGCWVIDESCRQLSEWRAKGFD-SLSISVNISP-SMYRMDLSGTINDAL 494

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK   +   + +  +E   M + + +  +LG+L +  +S+ LDDFGT  S LS+L  +  
Sbjct: 495 SKNGLAKGSLGIEVTEDTTMQSIKEADKMLGKLIEEDVSIALDDFGTGLSSLSHLQQMHV 554

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K + S +          A++ +II +  ++   ++A+ I  E   K LT   CDY Q
Sbjct: 555 QTLKIDRSFIHDIVSNPTSSALVNNIIAIGHDLGMKVVAEGIECEEAAKILTNYFCDYGQ 614

Query: 937 DSHVASPLGFNSILKLLKE 955
              ++ PL    +L  L  
Sbjct: 615 GYLISKPLAPKDVLPYLSA 633


>gi|119944007|ref|YP_941687.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119862611|gb|ABM02088.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Psychromonas ingrahamii 37]
          Length = 786

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 213/437 (48%), Gaps = 7/437 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E +   + +   A  D LTG+ NR+  + +L   ++          T+++ID+D++K 
Sbjct: 339 MSEVEVRHKEMSFLADHDPLTGLGNRRLLMAQLDANINRQKRHPTFISTLLLIDLDEFKL 398

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GDD+L  ++ R+   ++  D + RL G+ F I+L           FA  + 
Sbjct: 399 LNDGLGHNAGDDILKLMSLRMLSQVRNYDTVVRLGGDEFAILLDGVG-LEMAQSFAERLL 457

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +I  P     +++ + ASIG  +  ++ +    +++ A+LAMY AK RG   V  F+++
Sbjct: 458 DTITQPFKQNGQDLILRASIGLTAV-NNGLCKENLIRYADLAMYEAKRRGKGQVTIFKMA 516

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +      +++ L  A+ + +L + + PI+ L   E+V +EAL +W       +   E
Sbjct: 517 LLDTVSRRVLLEQALHSALNDDQLEVWFQPIVDLNSGEVVNMEALSRWSLA-GEFVPPEE 575

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE   MI  +   + +++   +   R +   P +   IN++ K   D  L   + +
Sbjct: 576 FINIAEITGMIIPLGQQLFDKVGCALQELRVE--HPNLQCNINLSVKQFRDRNLFTEITS 633

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++K     S   L  +ES+V+        ++ +L + G+   LDDFGT  S L  L  +
Sbjct: 634 CLNKYQLPTSAFHLELTESMVVETETDILPMMQKLVEHGLKFHLDDFGTGYSSLDRLNNL 693

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           PFDT+K + S +T        + R+II +   +   IIA+ +  ++++  L  +GC  IQ
Sbjct: 694 PFDTLKIDRSFVTSLGMGDDIMARNIINIGNELGLNIIAEGVETQVELDRLMDLGCSQIQ 753

Query: 937 DSHVASPLGFNSILKLL 953
             + A P+  + +   L
Sbjct: 754 GYYFAKPMPLSELKDWL 770


>gi|332142675|ref|YP_004428413.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552697|gb|AEA99415.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 456

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/437 (26%), Positives = 198/437 (45%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   A  D LTG+PNRQ  +  L++ L  + T+      ++ +DID +K IND  
Sbjct: 21  KQQSQMERLANFDALTGLPNRQFLMKILSSELTKARTN-RSELGLLFVDIDGFKSINDSF 79

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD  L+ ++  + +LL     L RL G+ F II     +   + D A  +  +++ 
Sbjct: 80  GHDTGDKFLLHISVIMSKLLDEAYTLGRLGGDEFIIIAPDIGDPKTLEDMAAKLVVAVSR 139

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             N     +    S+G A  +      S ++ NA++AMY AK  G      F        
Sbjct: 140 THNFNTLRLDSGVSVGLALASDCNYELSSLITNADVAMYKAKGSGKARFMWFNEEMLADT 199

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    I   L  A+EN   YL Y   +      I+G E L++W     G++S +EF+ IA
Sbjct: 200 KRKVLISTRLSSALENDAFYLAYQAKVDAEQN-IIGFETLLRWHDDVLGHVSPAEFIPIA 258

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  I++++++R+  +            I I IN++ +DL   +L + +   + + 
Sbjct: 259 EQTDKISLISMWIIKRLEIEAPRLIKSFG-SQIIISINLSPQDLNSEKLTQFILKGMREN 317

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +++  +E+  M N   +      ++  G  L LDDFGT  S LSYL     DT+
Sbjct: 318 KLPAKNLEIEITETAYMNNFNVANSFFESIKHYGCQLALDDFGTGYSSLSYLTKFDIDTL 377

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +E+   I ++II MAK++  ++ A+ +        L + GC  +Q   
Sbjct: 378 KIDRSFVNNIGISEQSELITKTIIKMAKSLNFSVCAEGVETREQATFLLQNGCHALQGFL 437

Query: 940 VASPLGFNSILKLLKER 956
            + P+    +L   + R
Sbjct: 438 YSKPIPLEDVLATSRRR 454


>gi|213970013|ref|ZP_03398146.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213925338|gb|EEB58900.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 964

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 218/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 520 VRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGR-QLVVMFIDLD 578

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L+    R+   ++  D+LARL G+ F  +L  +         A
Sbjct: 579 RFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFA-VLSIDTPLQTGTGIA 637

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  I  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 638 QRILTAFEQPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNGGRDSFA 697

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++ LEALI+W  P   
Sbjct: 698 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNTGDLLALEALIRWRMPDGR 757

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+   E L +I  ++L+ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 758 IIAPESFLPALEGLRLIGRLDLYMLKRVITILAQ-PENGHWPP--VHVNCSSYSITRPAF 814

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 815 AAEVLAMLAEHNVAPGRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 874

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 875 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 934

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + ++PL    ++
Sbjct: 935 EIGATQAQGYYFSAPLPIEQLV 956


>gi|77465114|ref|YP_354617.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389532|gb|ABA80716.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 772

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 13/447 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S E     A  D L GIPNR  F DRL   L  +         ++ +D+D++K +ND
Sbjct: 334 LHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALK-AERRGGPPVALLCLDLDRFKAVND 392

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD+++  +  R+   ++  D +ARL G+ FG+ILI   +   +  +   +   +
Sbjct: 393 TMGHQAGDELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLL 452

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P +L   ++ + ASIG     S       +L++A+ A+Y AK  G             
Sbjct: 453 AAPCDLKCGQVQIGASIGAVRAASVDGGREAILRSADTALYRAKAEGRGRYCIATPEMND 512

Query: 702 SDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R    I+ DL  AV    +++++Y PI     E IV  EAL++W+HP  G +    F+
Sbjct: 513 IFRRRHEIERDLREAVAEGGQIHVLYQPIFDAE-ERIVAAEALVRWNHPILGQMGPETFL 571

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I   +LE+            +  P  + +NI+   L      + + A++
Sbjct: 572 SIAEETGLIDRIGHHVLEQAC-----ILAATSGIP-RVSVNISPVQLRQETFADEVLAVM 625

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    S  R+ L  +E   +     +   L RLR  G+S+ LDDF T  SLL Y+     
Sbjct: 626 AAHSLSGERLVLELTEKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQI 685

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +           I+R+I+ + + +   + A+ +      + L  MGC   Q
Sbjct: 686 DTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGIEVTAEGVERASQREALLGMGCHGFQ 745

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              +  P+    +  L   +    K+ 
Sbjct: 746 GYLLGRPMDPLRLAALSARKGVAQKSA 772


>gi|126464567|ref|YP_001045680.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106378|gb|ABN78908.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 772

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 199/447 (44%), Gaps = 13/447 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S E     A  D L GIPNR  F DRL   L  +         ++ +D+D++K +ND
Sbjct: 334 LHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALK-AERRGGPPVALLCLDLDRFKAVND 392

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD+++  +  R+   ++  D +ARL G+ FG+ILI   +   +  +   +   +
Sbjct: 393 TMGHQAGDELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLL 452

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P +L   ++ + ASIG     S       +L++A+ A+Y AK  G             
Sbjct: 453 AAPCDLKCGQVQIGASIGAVRAASVDGGREAILRSADTALYRAKAEGRGRYCIATPEMND 512

Query: 702 SDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R    I+ DL  AV    +++++Y PI     E IV  EAL++W+HP  G +    F+
Sbjct: 513 IFRRRHEIERDLREAVAEGGQIHVLYQPIFDAE-ERIVAAEALVRWNHPILGQMGPETFL 571

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I   +LE+            +  P  + +N++   L      + + A++
Sbjct: 572 SIAEETGLIDRIGHHVLEQAC-----ILAATSGIP-RVSVNVSPVQLRQETFADEVLAVM 625

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    S  R+ L  +E   +     +   L RLR  G+S+ LDDF T  SLL Y+     
Sbjct: 626 AAHSLSGERLVLELTEKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQI 685

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +           I+R+I+ + + +   + A+ +      + L  MGC   Q
Sbjct: 686 DTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGIEVTAEGVERASQREALLGMGCHGFQ 745

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              +  P+    +  L   +    K+ 
Sbjct: 746 GYLLGRPMDPLRLAALSARKGVAQKSA 772


>gi|313672764|ref|YP_004050875.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939520|gb|ADR18712.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 554

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/562 (23%), Positives = 243/562 (43%), Gaps = 23/562 (4%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRD 462
            E   LA+  + D V   DI    V     +  I G     + G     +   ++   R+
Sbjct: 7   KEYLFLAIEYTSDWVIITDIDGVIVYANNAVEVISGYKKEEILGQKPSIFKSGLY--TRE 64

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           ++  + ++ +  +    +     +  D  F  ++  I P+   +G +++++ IA DI+ +
Sbjct: 65  DYEKLWNTILSGQ--VYKKALINKKKDGTFFQILHTILPIK-QDGRVVKFLSIAKDISRE 121

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            + L+ I    +QD  TG+ NR  F+  +      +  +  +   ++VIDI  +   N+V
Sbjct: 122 MELLDEIKKFKYQDTSTGLLNRAGFIYEINRS-AKNYKNIEIGMAIIVIDIVNFSHFNEV 180

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G +V  D+L    +R+ +      I+AR+ G+ F  I    +N  ++ +    +     
Sbjct: 181 YGTSVCSDLLKLFGKRLADRFGGNAIVARIGGDVFA-IFSIFSNINELMNMISEIISVCK 239

Query: 643 MPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
            P ++    EI     IG      S I   + L  AELA+  AK    +    +   ++ 
Sbjct: 240 SPFSIENINEIVFDIKIGARVLQQSDIYIEDSLHKAELALDFAKKNPNSIFRFYDDNINK 299

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +D V     +  A+EN  +   + PI      +IV LEAL++  HP  G I   +F+ 
Sbjct: 300 EVTDFVDTYHLVKEAIENKWIVFYFQPIYDTNSLKIVSLEALVRIKHPTMGLIYPDKFIN 359

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN---ELCEGMQA 816
             E    +      + E+    +    D+     + I INI+     +    +LCE +  
Sbjct: 360 FLERSSFLADFERILFEKALSYLNRISDETGG-NLNISINISVNSFRNGSIIDLCEKVSE 418

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +       I +  +E V     ++   +L +L ++G  L +DDFGT  S L Y+  +
Sbjct: 419 EMRRF------ISIEITERVFAEKVDKIIGVLNKLNEMGFVLEIDDFGTGYSSLGYIDKM 472

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S ++   E  K  AI++SII +AK +    IA+ +  +     L  +G D+
Sbjct: 473 PVDFLKIDMSFVSRMAECKKTYAIVKSIIELAKGVGMKTIAEGVETKEQYDMLKSLGTDF 532

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           +Q  + + PL F  IL  LK +
Sbjct: 533 VQGYYFSKPLPFEDILLKLKSK 554


>gi|261211310|ref|ZP_05925599.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260839811|gb|EEX66422.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 841

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/431 (24%), Positives = 204/431 (47%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    +         L   +++I IDK++ IND
Sbjct: 411 LKTSFKALRSQLVHDSLTQLLSREGLVENCNQL-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+++ +R+      P  +AR+ G+ F I L   N    +   A  + K  
Sbjct: 464 SLGHHQADQLLIAIAQRLNLTFPSPARIARIGGDEFAIYLPETNQQDDLKLIATNILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           A P ++    I V  SIG  S   + +T    L+N  +A+ +AK         S  +++ 
Sbjct: 524 ASPFSMPSDNIAVNVSIGIVSLEETNMTV--WLRNGSIALSNAKVDHTRISFYSPEMANA 581

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +   + LA++N E    Y PI+ L   E++G EAL +W  P+ G I   EF+ I
Sbjct: 582 SRKRMQMVTQIKLALDNHEFVPFYQPIVDLHSGEVLGAEALARWISPELGLIPPMEFIPI 641

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +   ++        + +N++   L   +  + +  ++ 
Sbjct: 642 AEESGLINAIGEQILRQACIDTVRGIQENKWPASFHMHVNLSVNQLSHPDFMDQLYRILE 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K+   PS + L  +ES ++ N       +  L+K GI + +DDFGT  S L+YL  +PFD
Sbjct: 702 KSQLPPSNLTLEITESRIVDNDPVILHNMLELKKAGIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +     +    +++ +I+ M +  +  ++A+ +  +  +  LT++ C + Q 
Sbjct: 762 CLKIDREFIAQLNAQNIENSVVAAIVNMTRGFKVELVAEGVETQEQVDLLTQLNCPHGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ ++ 
Sbjct: 822 FLFSKPIAYHD 832


>gi|152997863|ref|YP_001342698.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150838787|gb|ABR72763.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 655

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 209/437 (47%), Gaps = 17/437 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTIL-----------DLSATDDNLRPTVMVIDIDKYKKI 579
             A  D+LTG+PNR    + +  I+           +   +    +  + VID+DK+K++
Sbjct: 214 HLATHDSLTGLPNRLFLANMMHPIIIDHSDPTHKKYEEFYSHYPKQGCLFVIDLDKFKEV 273

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G A GD +L+++ +++G++L     L R  G++F II   E +  +  +    +  
Sbjct: 274 NDTFGHAAGDTLLINVAKKLGQVLDDAQTLVRFGGDKF-IIWAPEVDIEQAKNLVQRLII 332

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVS 698
           +   P+ + +  I+  ASIG + + S       ++  A+ AMY AK    G  + S R  
Sbjct: 333 TCNEPVMINKLAISTGASIGLSHYPSQATDPESLILYADTAMYEAKQNRSGWSMFSERNI 392

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ DL  A+   ++ L Y P + L D  I+G+EAL +W HP  G +  + F+
Sbjct: 393 QCGRQRLKLRADLDDALSERQIKLHYQPKVSLKDGHIIGVEALARWYHPTDGLLPPAHFI 452

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   ++    +++      +  W  Q       I IN++  +LLD  L +    L+
Sbjct: 453 ELIEQSGRVQEFGRYVITNAIEQLDLWHQQGLFT--HIAINLSPYNLLDPSLLDFTLRLL 510

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  +++++   ES    N E     L   ++ GI L +DDFGT  S LSY+  +  
Sbjct: 511 KNHKIEANKLEIELIESATSVNIEYISQSLNNFKEAGIKLAIDDFGTGMSSLSYISNLNV 570

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S + G  +   + A++ S++ +A + E  +IA+ I  +   + L  +GC Y Q
Sbjct: 571 NHIKIDRSFIDGVEQDIRKQAVVSSVVMLANSFECEVIAEGIENKSQSEMLIEIGCLYGQ 630

Query: 937 DSHVASPLGFNSILKLL 953
             + A P+   ++  +L
Sbjct: 631 GYYYAKPMTAENMQAML 647


>gi|70732246|ref|YP_262002.1| diguanylate cyclase [Pseudomonas fluorescens Pf-5]
 gi|68346545|gb|AAY94151.1| diguanylate cyclase, putative [Pseudomonas fluorescens Pf-5]
          Length = 780

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 113/431 (26%), Positives = 208/431 (48%), Gaps = 11/431 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  NA  D LTG+PNR   ++RLT  +            ++ + ID Y+ IN+  G 
Sbjct: 351 ERQLAHNALHDPLTGLPNRALAIERLTKAIATRR-----NVVLLYLGIDNYRAINEGFGT 405

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D ++  L+RR+ E+L   D  AR++ + F ++L +          A  +   ++ P 
Sbjct: 406 EGLDQMMGELSRRLREVLSQGDTAARITASEFLLLLEN-TELDGAMAMADRLHDLLSRPQ 464

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDR 704
            +   E+     +G A + +   ++ E++  A +A + A    G   V           +
Sbjct: 465 LIQGDEVRRQICMGMAVYPADGKSAEELISRAAIARHDASLKPGYLQVYQQDRDLAHQRQ 524

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  DL  A    EL+L+Y P + L  + +   EAL++W HP +G +S +EF+ +AE  
Sbjct: 525 ISLIRDLRRAAAEGELFLLYQPKLDLRRDYLHQAEALLRWQHPVFGVVSPAEFIPLAERT 584

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             + ++  +++E   R +  W  +A   P+ + +NI++ DL D+ L   +   +     +
Sbjct: 585 GSMHSLTAWVIEACIRQLAEWNRRA--LPVRLSLNISASDLEDDGLEVRVSDYLEGYQVA 642

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             ++    +ES +M +PE++  +L RLR  GISL++DDFGT  S L+ L  +P   +K +
Sbjct: 643 AEQLVFEITESAIMRDPEQALAVLQRLRGCGISLSVDDFGTGYSSLAQLQRLPVQELKID 702

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    E      I+RS I M+  +   ++A+ +  E  +K L   GCD +Q   ++ 
Sbjct: 703 QSFIRNLDETSGDAVIVRSTIEMSHKLGLKVVAEGVEYEHCLKLLESWGCDTVQGYLISR 762

Query: 943 PLGFNSILKLL 953
           PL   +  + L
Sbjct: 763 PLPTEAFERWL 773


>gi|226227424|ref|YP_002761530.1| putative response regulator [Gemmatimonas aurantiaca T-27]
 gi|226090615|dbj|BAH39060.1| putative response regulator [Gemmatimonas aurantiaca T-27]
          Length = 615

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/454 (23%), Positives = 206/454 (45%), Gaps = 19/454 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D LTG+ NR+ F D+L   L   +  +  +  ++ +D+D +K IND  G A+
Sbjct: 146 EAAHRATHDPLTGLANRELFQDQLERALAFGSRYNR-KTGLIFVDLDGFKAINDTRGHAL 204

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  +  R+ E ++  D +ARL G+ F ++L    +   +A     +  +   PI +
Sbjct: 205 GDLLLKVVAGRLLECVRRSDAVARLGGDEFVVLLPDVTSRRDVAFVKDCIIDAFRTPIQV 264

Query: 648 LEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
            + E  TV ASIG A        + ++L  A+  MY  K++              +    
Sbjct: 265 SDSEFLTVEASIGGAMSPLDGAVAQDLLDAADADMYREKYQRRRGRAHTPTLGVLAMNAE 324

Query: 707 IK--------------EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           ++                L  A+   E  + + P++ ++ + ++  EAL++W  P  G I
Sbjct: 325 LEPLPSAAETVSRRREARLRAAMGRGEFEVHFQPVLDVIGDRVIAAEALLRWRDPDRGLI 384

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELC 811
           S + F+ +AE+  +I  I   +LE+  R I+ WR   A +  + + +N+++  L ++   
Sbjct: 385 SPTAFLSLAEDTGLIVPIGEQVLEQACRAIVQWRLANAALGSLRVAVNLSAVQLREHGFE 444

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  +++ T   P  + L  +ES  M + E +   L  L+ +G+ L +DDFG   + L+
Sbjct: 445 RRVAQVLATTGCPPDALTLELTESSTMVDGETAMETLRALKGLGLRLVVDDFGVGHASLT 504

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           +L   P D +K +   ++      + +AI+  ++ +A+ +   + A+ +      + L R
Sbjct: 505 FLREAPVDGIKIDRRFVSQLMVDPRDMAIVSGMVRLARGLGLEVTAEGVETAEQSQRLAR 564

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + C   Q  H +  L    +  LL  R      +
Sbjct: 565 LQCFAQQGRHFSDALPLEQMTGLLHSRIGSSPRS 598


>gi|221215012|ref|ZP_03587980.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Burkholderia multivorans CGD1]
 gi|221165239|gb|EED97717.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Burkholderia multivorans CGD1]
          Length = 790

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 128/587 (21%), Positives = 245/587 (41%), Gaps = 24/587 (4%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRD 426
           L    +   +LI F  ++      +  + I S+ +R       A+    D +    +   
Sbjct: 199 LFLSYLAASLLIVFLGVRWAGRAQHQQRSIQSELDRSQALAEAALRSVADAIVTVGLTSG 258

Query: 427 RVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             T  P    +LG ++    G    + L  I  +   +   +L S        L  +  +
Sbjct: 259 IETVNPAAEQLLGTSARDCIGKPVNDVLALIDPSTGMSI-NLLPSLSNSGDATLTRDLEL 317

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
             AD     +   +  M N+ G  + Y+ I  D+T + + +E +   A  D LTG+ NR 
Sbjct: 318 IRADAPAVAVRASLSRMDNAPGRCVGYVLILRDMTREYQLIERLTWQASHDALTGLINRT 377

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +F  R+   L+  A        ++V+D+D +K++NDV G A GD +L  +T      L  
Sbjct: 378 AFERRVDEALNACAAT-----VLLVLDLDGFKEVNDVCGHAAGDALLREVTAVFQRCLGA 432

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWT 664
            D   RL G+ FGI+L +    L     A  +R S+             ++ SIG  +  
Sbjct: 433 DDAFGRLGGDEFGILLTATGGPLPDGGKAEQLRASLEAYTFCWDGERFKLSVSIGMLNLD 492

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSEL 720
               +  + ++ A++A Y AK RG N V         +S ++  +     +  A+E++  
Sbjct: 493 CRPESVEKAMQLADVACYVAKDRGRNRVHVAEPRDMSASRQAYHLEWSRRVKAALESNAF 552

Query: 721 YLVYHPIIRLMDEEIVG--LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            L   PI+ +         +E L++        +S   F+  AE    +  I+ +++  +
Sbjct: 553 QLYAQPIVPIQPALAAQQRIEILLRIPDADGKLVSP-VFLPAAERYGHMTMIDRWVVRTV 611

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R +     +         +N+++  + +    E ++  ++ +   PS++    +E+  +
Sbjct: 612 VRRLAQLERRN---DFECNVNLSAMSITNEGFVEFVKRELTTSGVDPSQLCFEITETSAV 668

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            N E +   +  LR +G    LDDFG   S  SYL  +P D +K +G L++  T    + 
Sbjct: 669 RNLEVASRFMHELRDLGCRFALDDFGAGMSSFSYLSKLPIDYLKIDGGLVSRMTSDCVKR 728

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            I+ +I  +A  ++   +A+ +  E   + L  +G DY Q  + + P
Sbjct: 729 GIVCAINDIAHLLQYRTVAEHVEDEETAEMLRSLGVDYCQGYYFSRP 775


>gi|307727241|ref|YP_003910454.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307587766|gb|ADN61163.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 475

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 206/440 (46%), Gaps = 9/440 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T +          +F D+LTG+ NR     R    L  +         ++VI++D + +I
Sbjct: 30  TARTHGYGHPAHGSFIDSLTGVYNRAYATGRAQQWLRSARA---AHVAMIVINLDCFSRI 86

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND+    +GD +L S+ +R+   +   D+LAR+ G+ F I+     +   +  +A  +  
Sbjct: 87  NDMADYDLGDRLLRSVAQRLAGRVAANDLLARIGGDEFVIVTDGHRDVPTLPTYARQILG 146

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             A P  +  R   ++AS G A        ++ ++++A  AM  AK +G   +  F    
Sbjct: 147 LFAEPFVIAGRAYRLSASGGVALGAGHLRDAAVLMRDAGAAMRRAKTQGPGSLRFFTGDM 206

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             + +    I+E L  A++ SE  L Y P++     E VG+EAL++W   + G++S +EF
Sbjct: 207 HEAAQRRFSIEERLRGALDASEFRLAYQPVVNAAARETVGVEALLRWTSSELGDVSPAEF 266

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  ++++I  +++E+    +  WR     P + + INI+     +  L + + A 
Sbjct: 267 VPIAEQAGLMESIGGWVMEQACAQVADWRWSIA-PDVTVSINISPVQF-NEHLVQHVAAC 324

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++ T   PS ++L  +E ++M +       +  L ++G+ L +DDFGT  + +SYL    
Sbjct: 325 LANTGLEPSALQLEITEGMLMPDDPTIGATISALTRMGVRLAIDDFGTGYASMSYLKRFS 384

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S + G    +   AI  +++ MA     ++ A+ +  E     L  MGCD++
Sbjct: 385 PHGLKIDRSFVAGLPHDKDCAAIAHALVRMAHACAMSVTAEGVETEEQASLLREMGCDFL 444

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q      P         L  
Sbjct: 445 QGFLFGRPGSAAECSGKLSR 464


>gi|330875169|gb|EGH09318.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 922

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 219/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 478 VRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGR-QLVVMFIDLD 536

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L+    R+   ++  D+LARL G+ F  +L  +      A  A
Sbjct: 537 RFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFA-VLSIDTPLQTGAGIA 595

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  I  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 596 QRILTAFEQPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNGGRDSFA 655

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++ LEALI+W  P   
Sbjct: 656 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNTGDLLALEALIRWRMPDGR 715

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+   E L +I  ++L+ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 716 IIAPESFLPALEGLRLIGRLDLYMLKRVITILAQ-PENGHWPP--VHVNCSSYSITRPAF 772

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 773 AAEVLAMLAEHNVAPGRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 832

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 833 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 892

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + ++PL    ++
Sbjct: 893 EIGATQAQGYYFSAPLPIEQLV 914


>gi|327194331|gb|EGE61191.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 567

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/556 (22%), Positives = 244/556 (43%), Gaps = 33/556 (5%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           GSG         +++      +  I G+    +      WL  IH +D      I    +
Sbjct: 19  GSGSG--STTSPKNQTRWDEQLKLIYGVPKAPLD---VIWLDSIHPDDLVPTNEIFLRAI 73

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------EQKKS 525
             +      EFR+   D    ++  R R   ++ GD   ++G   D+T       E ++S
Sbjct: 74  ETKSD-YASEFRIIRPDGATRYLRSRARYFVDAAGDPC-FVGAEWDVTDDVLLNKELERS 131

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D+LTG+ NR+SF       L   A  ++++  ++ ID+D +K+IND  G 
Sbjct: 132 RAEARFAADHDHLTGLLNRRSF----DFALSELAGQESVKVALLHIDVDHFKEINDRFGH 187

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD VL  +++ + E +   D+ ARL G+ F +++  E+   +       +++ +  P+
Sbjct: 188 AVGDLVLCHVSKILLEAISAGDVAARLGGDEFAVVIT-EDECDRTIAVLDHIQRRLESPL 246

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--D 703
            + ++ + V  SIG AS        + +L  ++LA+YHAK  G N  E F      +  +
Sbjct: 247 PVGDQTLIVRCSIGVASAM--SADFARLLSQSDLALYHAKRNGRNRAEIFSDEMASTLAN 304

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              + +DL   +   ++   Y   +      + G+EAL +W HP  G ++ + F+ IA  
Sbjct: 305 ERQLAQDLRSGLALGQIRPFYQVQVDAKSFRVNGVEALARWHHPTRGILAPAHFLSIASS 364

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++  ++  +L+ +  D+      A +  I + +N+++  L D EL       +     
Sbjct: 365 NGLVAELDDVVLKAVLSDMK---SSALLEGIRVSVNLSADRLDDPELAAK----LDGYDI 417

Query: 824 SPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              R+     E++ + +  ++ R  +  ++  GI + +DD G+  + L  L  +  D VK
Sbjct: 418 PSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGIDIEIDDLGSGHASLLGLLELRPDRVK 477

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +  L+T   +      ++ S++ +A+ ++  +IA+ +        L  +G   +Q    
Sbjct: 478 IDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIAEGVETLEHANVLAALGVHTLQGYAF 537

Query: 941 ASPLGFNSILKLLKER 956
             P  F  +   L++ 
Sbjct: 538 GRPHSFADLSARLEQE 553


>gi|302869993|ref|YP_003838630.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|302572852|gb|ADL49054.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
          Length = 840

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/784 (18%), Positives = 302/784 (38%), Gaps = 50/784 (6%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
            +F++V                   +++    L   +       ++      + + S+  
Sbjct: 47  FVFFVVMAGISFAVLNVYVRRQSVGVTLTEVPLIVALYFLPPLSVVLIYTLSVLIWSASH 106

Query: 267 IF--LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
            F    ++ +  +  A     +   +A   +       +  +  ++  +TL S+V     
Sbjct: 107 RFGAAKLWFNVAKAAAATSLASLVLLALPPLRGVGPGTWGSLFLAVCVVTLVSLVSVVGV 166

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
            ++  G +    A+  +P  +L     + + + +   L       AL+   +   +++ +
Sbjct: 167 HVLLQGWQAGRDALRSMPTALLTAAINVAIGLLVLIALKTTWWS-ALLLAALFSGLVLVY 225

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----GL 440
                         G++   E   L   G+   + D  + R R     + AT+     G 
Sbjct: 226 RSYSQFFRQHRTLAGMY---ELTRLLASGTERSLADILLDRVRALMQAEYATLWLPAQGR 282

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV------RAADNQFHW 494
               +     +    +   D       L   V  +   L     +      R A  +   
Sbjct: 283 HPEVLLTARVDTPGLL---DLAPTPASLRQQVHKKGRTLSIGRWLGGDPALRQAAGEERV 339

Query: 495 MIIRIRPMSNSNGDI--LRYIGIANDIT---------------------EQKKSLEGILC 531
               + P+ +    I  L      +DI                      E  + ++ +  
Sbjct: 340 KDAIVVPLRSGQAVIGTLEVTNRLSDIGHFAPGDIPVFETVAAHAAVALENSRLVDRLRH 399

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +A  D LTG+PNR+     +   +            +++ D+D+ +++N+ LG A GD V
Sbjct: 400 DADHDALTGLPNRRRLTSSVAEAVK--IRAPGEVVALLLFDVDRLRQVNESLGHAAGDKV 457

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +  R+        ++ R  G+ F + L    ++    + A  +R+ I   +      
Sbjct: 458 LMEVAERLRSCAPSSALVGRAGGDEFLVTLR-LESTEAALELAAQLREQIRDEMVFDALT 516

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKED 710
           + V   +G A        +  +L+  +LA   AK   G   + S  + S    R+ +  D
Sbjct: 517 LDVDTVVGVAVHPDHGSDAVALLQRVDLAATAAKSVPGSVQLYSPALESRSLRRLGLAGD 576

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A++  EL + + P + L D  +VG+E L +W+HP  G+++  +F+ +AE    +  +
Sbjct: 577 LQRALDEGELEVYFQPKVTLRDRRLVGVECLARWEHPAHGSVAPDDFVAVAEHTGQLGRL 636

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             F+L    R    W       P+ + +N+A++ L D      ++ L+++    P R+ L
Sbjct: 637 TEFVLRESLRRSRDW--SHGEQPLSVAVNLAARTLTDQHFPALVRDLLAEYGVPPQRLTL 694

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ V+   ER    L  LR +G+ L++DDFGT  S L+ L  +P   VK + S + G
Sbjct: 695 EVTEAGVLDGTERPIPTLRSLRDLGVRLSVDDFGTGNSSLAQLRRLPVHEVKVDRSFVQG 754

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                  +AI+ +++ +++     ++A+ +  E+ ++ L  +GC+  Q    + PL +  
Sbjct: 755 MATDPGDLAIVNAVVTLSQQFGLAVVAEGVESELTLELLQDIGCEIGQGFLFSRPLPYER 814

Query: 949 ILKL 952
           +   
Sbjct: 815 LEAW 818


>gi|254976511|ref|ZP_05272983.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255093895|ref|ZP_05323373.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255315648|ref|ZP_05357231.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255518308|ref|ZP_05385984.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255651426|ref|ZP_05398328.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260684485|ref|YP_003215770.1| putative signaling protein [Clostridium difficile CD196]
 gi|260688144|ref|YP_003219278.1| putative signaling protein [Clostridium difficile R20291]
 gi|306521255|ref|ZP_07407602.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260210648|emb|CBA65346.1| putative signaling protein [Clostridium difficile CD196]
 gi|260214161|emb|CBE06385.1| putative signaling protein [Clostridium difficile R20291]
          Length = 739

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 218/434 (50%), Gaps = 10/434 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K + + IL  A++D +T I N+  F    +  L       +L   ++  DI+ +K IND 
Sbjct: 313 KSNEKEILSLAYEDKVTHIGNQNKFYRECSKYLLD---KPSLNYIIVYFDINNFKMINDT 369

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L+++ + + E L   ++ ARLS + F I    +N   K      ++R +I 
Sbjct: 370 FGYEFGDNLLITIAKALKEELTEGEVYARLSSDYFAIFCDYKNGKNKRIRKIDSIRNNIE 429

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFR 701
             +++      ++  +G       ++   + +  A +A   AK       + +  V +  
Sbjct: 430 SNLSI---VFEISLCVGIYFVEEGEVDIQKAVNKANMARSVAKGKNINYAIYNEDVRNKL 486

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S+  MI +D+ +A+  ++  + Y P   L+  E++G EALI+W+HP+ G IS + F+ IA
Sbjct: 487 SEESMILDDIKIALVKNQFEVYYQPKFSLVTGEMIGSEALIRWNHPEHGFISPAVFIPIA 546

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  F+ ER+  D+  W+ Q     + + IN++  +L   ++ + +   I   
Sbjct: 547 EKSKLILKIGRFVFERVCNDLSEWKKQGKKI-VPVSINLSRVELYQPDIVKFINKTIQMY 605

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   I++  +E+V +      + +L  LRK G S+++DDFGT  S +S L  +P D +
Sbjct: 606 NLSSDLIEIEITETVAINELNILKNVLNELRKYGFSISMDDFGTGYSSISCLRDMPIDIL 665

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G    E+   I +SI+ +AK+++  +I + +  +   + + + GCD +Q  +
Sbjct: 666 KLDKSFLNGIEHDERSRNIAKSIVSLAKSLDLVVIIEGVESKEQAELMKQFGCDLVQGFY 725

Query: 940 VASPLGFNSILKLL 953
            A P+   + L LL
Sbjct: 726 FARPMPAKNFLDLL 739


>gi|218460488|ref|ZP_03500579.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 361

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/361 (46%), Positives = 245/361 (67%), Gaps = 2/361 (0%)

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D LARL+G++FG+IL+SE+N  K+ADFA A+ K+I +PIN   REI +TASIG ASW 
Sbjct: 1   PQDTLARLAGDQFGLILVSEHNPAKVADFADAISKAIMVPINFSNREIILTASIGLASWV 60

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722
             + ++S +L +AELAMY AK  GGN VE F+ +      DR+ ++ DL  A+E  EL +
Sbjct: 61  DRQESASGLLSDAELAMYRAKRAGGNRVEPFQPAFRDFGTDRLQLETDLRRAIERRELSM 120

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           VY PI RL D E+ G EAL++W+HPK GNI  SEF+ IAE   +I  + +F LE+   D+
Sbjct: 121 VYQPIARLEDVEVAGFEALMRWEHPKRGNIPPSEFIPIAEASDLIGPLGMFALEQATNDL 180

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
           +SW+ Q    PIF+ IN++S  LL+NEL + ++++++KT  +PSR+KL  +ES+VM NPE
Sbjct: 181 MSWQTQTGELPIFVSINLSSVQLLNNELYDDVRSVLAKTHCAPSRLKLELTESMVMENPE 240

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902
           ++RL+L +L++ GI L LDDFGT  S L+YL   PFDT+K + +L+   ++K+  +LRS+
Sbjct: 241 QARLVLQKLKEAGIGLALDDFGTGYSSLAYLTRFPFDTIKLDKALVRDGSDKKATVLRSV 300

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           I MA+ +E  ++A+ I    D  EL +MGC Y Q      P+   S+L+LL++RFPL K 
Sbjct: 301 IAMARELEMKVVAEGIESNEDAIELAKMGCSYGQSYLFGPPIPSESVLRLLRDRFPLTKR 360

Query: 963 T 963
            
Sbjct: 361 A 361


>gi|194290402|ref|YP_002006309.1| signaling diguanylate cyclase (ggdef) with eal and pas domains
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224237|emb|CAQ70246.1| putative signaling diguanylate cyclase (GGDEF) with EAL and PAS
           domains [Cupriavidus taiwanensis LMG 19424]
          Length = 966

 Score =  399 bits (1026), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/603 (17%), Positives = 226/603 (37%), Gaps = 21/603 (3%)

Query: 354 LWMAITKRLDNDIIQPALV--GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               +  R  + +   A                  +  +     +   +F++ ER  + +
Sbjct: 346 AEFRLRTRAGDYLWVRARGRLVRGAGRRRARMAGSLTDISEHKRYETQLFAEKERAQVTL 405

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDS 470
              GD V   D+     +  P    + G       G   + +  +   D       I+  
Sbjct: 406 QAIGDAVVTADVWGRVQSLNPAAEALTGWREAEARGQPLSAVCVLRDEDSLAPLPDIVTL 465

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWM---IIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +  R      +   R    Q   +      +  + +     +  + + +DI++++    
Sbjct: 466 ALRQRWHSRSAQLVQRDGAGQPGPVLAVKPSVALIRDRAAQAIGVVVVLHDISQERAHAA 525

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR  F  RL   ++L+     +  T+M +D+D++K +ND  G A 
Sbjct: 526 RLAYEASHDALTGLVNRAEFERRLAAAIELA-RAQGVPHTLMYLDLDQFKVVNDTCGHAA 584

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+++  +   +   L+  D+LARL G+ FG++L    ++              +     
Sbjct: 585 GDELIRQMAEIMRGQLRRSDMLARLGGDEFGVLLEHCGSADGERVAEGLRHAIASFRFAH 644

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV----SSFRSD 703
            +R   V  SIG  +      + +E L  A+ A Y AK  G N V+ +         R  
Sbjct: 645 RQRTFAVGVSIGLVTLDRHTGSVAEALSAADAACYVAKEGGRNRVQVYHPLDSVVQARHG 704

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEI----VGLEALIQWDHPKWGNISSSEFML 759
            +     +  A+      L    I+ +    +      +E L++    +   +    F+ 
Sbjct: 705 EMEWVSRVHAALAAGRFCLFSQEIVPVQPAALPPAGRHVELLLRLVDERGRLVPPMAFVP 764

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  I+ +++E     +   + +         IN++   L D +  + ++    
Sbjct: 765 ACERYNLMPMIDRWVVETAFATLAGRQAEIA----TCAINLSGSSLADIQFPDFVREQAQ 820

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +   I    +E+  + N  ++   + +L+++G    LDDFG   S  +YL ++P  
Sbjct: 821 RFGIALDGICFEVTETAAIANLAQAGAFIMQLQQLGCRFALDDFGAGMSSFTYLKHLPAA 880

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +GS +         + ++  I  +   +    IA+ +  E  +  L  +G D +Q 
Sbjct: 881 YLKIDGSFVRDMLADPVNLVMVEVIQRIGHAMGKQTIAEFVENEAMLARLRELGVDLVQG 940

Query: 938 SHV 940
            H+
Sbjct: 941 YHI 943



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 4/173 (2%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHV---LATGYFSQGIFSDGERQSLAVLGSG 415
             +    + +    G  V+   L+   ++  V          + +    E+  LAV GS 
Sbjct: 222 LGQASRRVTRLLTTGSAVMAAALLMSAILLSVGPLRRERRLREALAQREEQLQLAVEGSN 281

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D +WDW +    +  +P  A +LG +   +       L  +H ++   F   L   +   
Sbjct: 282 DGLWDWHLGHGELYFSPRCAQMLGYSGDELPHARETVLGLLHPSELAAFEAKLAHHLR-S 340

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 EFR+R     + W+  R R +  +     R  G   DI+E K+    
Sbjct: 341 GEPYDAEFRLRTRAGDYLWVRARGRLVRGAGRRRARMAGSLTDISEHKRYETQ 393


>gi|85374422|ref|YP_458484.1| hypothetical protein ELI_07975 [Erythrobacter litoralis HTCC2594]
 gi|84787505|gb|ABC63687.1| hypothetical protein ELI_07975 [Erythrobacter litoralis HTCC2594]
          Length = 654

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 205/437 (46%), Gaps = 12/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D +T + NR     ++   L   + D      +  +DID++K++ND+L
Sbjct: 215 RLARKMEIQAHTDVVTKLANRAGLNHQMVEKLMAISQDQ--MLAMYWLDIDRFKEVNDLL 272

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VLV L +R+ E +    ++AR  G+ F  ++    +       A  +   +  
Sbjct: 273 GHQTGDKVLVELAQRLKEAMPQNALVARFGGDEF-TVVTEVGSRRHAEMLASEVHAELMR 331

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P+ +    + V ASIG A      + S E+++ A+LA+YHAK  G    + +   +S   
Sbjct: 332 PMRIDGDRLEVGASIGVALLPDDGVDSDELMQKADLALYHAKVNGRKQTQFYDASMSRDL 391

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + +  I+ +L  A+   EL + + PI+ L    I   EAL++W HP+ G +   EF+ +A
Sbjct: 392 ARKREIEAELRAAILKDELSIFFQPIVDLKTGRIRTFEALVRWFHPEKGELRPDEFIPVA 451

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  ++  + A+    W ++     + + +N++   +       G+   + + 
Sbjct: 452 EDSGLIVTLGNWITAQAAKAAAQWPEE-----VTLAVNLSPLQIKAPGASLGVLNALREA 506

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R++L  +ES+ + + E + L +  L   G+   +DDFGT  S L Y+   PF  +
Sbjct: 507 QLPPERLELEVTESLFLDDSEATELFINELAAKGVRFAMDDFGTGYSSLGYINKYPFSKI 566

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S ++    ++K  AI+R++  M   ++  I+A+ +     +K +   GC   Q  +
Sbjct: 567 KVDRSFVSGPDVSKKTEAIIRAVAEMGAQLDMDIVAEGLEKIEQVKAVREAGCTLGQGYY 626

Query: 940 VASPLGFNSILKLLKER 956
            +  +       LL + 
Sbjct: 627 FSRAVPDYLAAMLLAQE 643


>gi|221369115|ref|YP_002520211.1| Periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides KD131]
 gi|221162167|gb|ACM03138.1| Periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides KD131]
          Length = 780

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 199/447 (44%), Gaps = 13/447 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S E     A  D L GIPNR  F DRL   L  +         ++ +D+D++K +ND
Sbjct: 342 LHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALK-AERRGGPPVALLCLDLDRFKAVND 400

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD+++  +  R+   ++  D +ARL G+ FG+ILI   +   +  +   +   +
Sbjct: 401 TMGHQAGDELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLL 460

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P +L   ++ + ASIG     S       +L++A+ A+Y AK  G             
Sbjct: 461 AAPCDLKCGQVQIGASIGAVRAASVDGGREAILRSADTALYRAKAEGRGRYCIATPEMND 520

Query: 702 SDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R    I+ DL  AV    +++++Y PI     E IV  EAL++W+HP  G +    F+
Sbjct: 521 IFRRRHEIERDLREAVAEGGQIHVLYQPIFDAE-ERIVAAEALVRWNHPILGQMGPETFL 579

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I   +LE+            +  P  + +N++   L      + + A++
Sbjct: 580 SIAEETGLIDRIGHHVLEQAC-----ILAATSGIP-RVSVNVSPVQLRQETFADEVLAVM 633

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    S  R+ L  +E   +     +   L RLR  G+S+ LDDF T  SLL Y+     
Sbjct: 634 AAHSLSGERLVLELTEKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQI 693

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +           I+R+I+ + + +   + A+ +      + L  MGC   Q
Sbjct: 694 DTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGIEVTAEGVERASQREALLGMGCHGFQ 753

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              +  P+    +  L   +    K+ 
Sbjct: 754 GYLLGRPMDPLRLAALSARKGVAQKSA 780


>gi|328472833|gb|EGF43681.1| hypothetical protein VP10329_19155 [Vibrio parahaemolyticus 10329]
          Length = 568

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 235/560 (41%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNQGFYEQLGINAGRI--NLDRWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+     +D+ +     R+   +R+R  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSKRVDAHINTDNTRVTTTYRLRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  +   +       +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLLLDIEEHV----CSTDTPTSICYIQINEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + + ++  L + +  L      + R+  + F I++  + +   +  +A  
Sbjct: 186 KSYLNQYGNELVNGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILIQDDCSIDTLQAYAET 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + +  + 
Sbjct: 246 IKQTYHEAVVEEGQYLGSNISIGLYPCIDPAHSADEILRKAARTCQYASEQNKDRISIYS 305

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +         I++ L  A+E   L + + PII     E+V  E+L++W   ++G I  
Sbjct: 306 QRTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIINAKSSEVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I  +   +  +  + I  +R++     + + +N++   L++ E    +
Sbjct: 366 DEFIPVAENKGLIVELGYQVFAKACQFIKQYRERYQNE-VRVNVNVSVLQLMNGEFPSRI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +   +P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEAGVAPQSIVLELTETFILDNNQTAMAPLNTLRELGFALSLDDFGSGYSSLNCFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M       ++ + I         T+MG 
Sbjct: 485 DLPMTQIKIDKSMAWKTLTNHSSREYLKFLIAMCHENNIEVVIEGIEDAKMCDFFTQMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|315501454|ref|YP_004080341.1| diguanylate cyclase/phosphodiesterase with gaf sensor
           [Micromonospora sp. L5]
 gi|315408073|gb|ADU06190.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Micromonospora sp. L5]
          Length = 840

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/784 (17%), Positives = 302/784 (38%), Gaps = 50/784 (6%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
            +F++V                   +++    L   +       ++      + + S+  
Sbjct: 47  FVFFVVMAGISFAVLNVYVRRQSVGVTLTEVPLIVALYFLPPLSVVLIYTLSVLIWSASH 106

Query: 267 IF--LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
            F    ++ +  +  A     +   +A   +       +  +  ++  +TL S+V     
Sbjct: 107 RFGAAKLWFNVAKAAAATSLASLVLLALPPLRGVGPGTWGSLFLAVCVVTLVSLVSVVGV 166

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
            ++  G +    A+  +P  +L     + + + +   L       AL+   +   +++ +
Sbjct: 167 HVLLQGWQAGRDALRSMPTALLTAAINVAIGLLVLIALKTTWWS-ALLLAALFSGLVLVY 225

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----GL 440
                         G++   E   L   G+   + D  + R R     + AT+     G 
Sbjct: 226 RSYSQFFRQHRTLAGMY---ELTRLLASGTERSLADILLDRVRALMQAEYATLWLPAQGR 282

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV------RAADNQFHW 494
               +     +    +   D       L   V  +   L     +      R A  +   
Sbjct: 283 HPEVLLTARVDTPGLL---DLAPTPASLRQQVHKKGRTLSIGRWLGGDPALRQAAGEERV 339

Query: 495 MIIRIRPMSNSNGDI--LRYIGIANDIT---------------------EQKKSLEGILC 531
               + P+ +    I  L      +DI                      E  + ++ +  
Sbjct: 340 KDAIVVPLRSGQAVIGTLEVTNRLSDIGHFAPGDIPVFETVAAHAAVALENSRLVDRLRH 399

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +A  D LTG+PNR+     +   +            +++ D+D+ +++N+ LG A GD V
Sbjct: 400 DADHDALTGLPNRRRLTSSVAEAVK--IRAPGEVVALLLFDVDRLRQVNESLGHAAGDKV 457

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +  R+        ++ R  G+ F + L    ++    + A  +R+ I   +      
Sbjct: 458 LMEVAERLRSCAPSSALVGRAGGDEFLVTLR-LESTEAALELAAQLREQIRDEMVFDALT 516

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKED 710
           + V   +G A        +  +L+  +LA   AK   G   + S  + S    R+ +  D
Sbjct: 517 LDVDTVVGVAVHPDHGSDAVALLQRVDLAATAAKSVPGSVQLYSPALESRSLRRLGLAGD 576

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A++  EL + + P + L D  +VG+E L +W+HP  G+++  +F+ +AE    +  +
Sbjct: 577 LQRALDEGELEVYFQPKVTLRDRRLVGVECLARWEHPAHGSVAPDDFVAVAEHTGQLGRL 636

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             F+L    R    W       P+ + +N+A++ L D      ++ L+++    P R+ L
Sbjct: 637 TEFVLRESLRRSRDW--SHGEQPLSVAVNLAARTLTDQHFPALVRDLLAEYGVPPQRLTL 694

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ V+   +R    L  LR +G+ L++DDFGT  S L+ L  +P   VK + S + G
Sbjct: 695 EVTEAGVLDGTDRPIPTLRSLRDLGVRLSVDDFGTGNSSLAQLRRLPVHEVKVDRSFVQG 754

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                  +AI+ +++ +++     ++A+ +  E+ ++ L  +GC+  Q    + PL +  
Sbjct: 755 MATDPGDLAIVNAVVTLSQQFGLAVVAEGVESELTLELLQDIGCEIGQGFLFSRPLPYER 814

Query: 949 ILKL 952
           +   
Sbjct: 815 LEAW 818


>gi|319427855|gb|ADV55929.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 859

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/575 (21%), Positives = 232/575 (40%), Gaps = 23/575 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER  + +    + V   D+    +   P   ++L +AS       
Sbjct: 293 ASRVNSLLARIYQQKERAKITLESIAEAVILTDVDARVIYMNPRAESLLNMASCYAINQT 352

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L  +        + +              + ++  A      M   I  + N + +I
Sbjct: 353 ---LASLLKAGEQLNQAVFTCIRLGETAPQVEKIKLLTA--TPRIMERSISNLRNHDKEI 407

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + I  DIT+++     +   A  D++T + NRQ+F +RL +  D + T       V 
Sbjct: 408 VGTVVILRDITQEELLKRQLQKRADFDSITLLLNRQAFDERLLSFADNAKT-----IAVC 462

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G A GD +L  + + +   L   ++L R+ G+ FG+++ + +    
Sbjct: 463 YLDLEQFKLINDSCGHAAGDRMLAMVAKVMQACLGPQELLGRIGGDEFGLVICNRSALSV 522

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +        +     +N       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 523 VQLLKQISAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACLAAKAKGA 582

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI  L    +   +E L++ 
Sbjct: 583 NQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGTGPQRQRMEILLRI 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +         P   I IN++   
Sbjct: 643 QEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLHP--VLWPDHCISINLSGNS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             I    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 701 LGAEGMVEYIAQQQRVFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 761 SGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 820

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            I  L  +G +Y Q   +  P   +    L +E++
Sbjct: 821 IIDRLQTIGINYAQGYAIGRPQPLS----LYREQY 851


>gi|37904133|gb|AAO43574.1| sensory box GGDEF family protein [Bacillus thuringiensis serovar
           canadensis]
          Length = 406

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/402 (27%), Positives = 208/402 (51%), Gaps = 5/402 (1%)

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           A  +     V+ +D+D++KKIND LG  VGD +L+ + +R+   L+  DI+AR  G+ F 
Sbjct: 3   AQTNANDVAVIFLDLDRFKKINDRLGHDVGDLLLIEVAKRLRGCLRSKDIVARQGGDEFT 62

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L    +       A  +   +  P  +   E+++T SIG A +       +E++KNA+
Sbjct: 63  ILLPEMYSEKSAIFIAEQILTILNKPFFIQGEELSITPSIGIAMYPDYGTDVNELMKNAD 122

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK  G N    F       +++   ++ +L  A++ +E +L Y P +    ++I+
Sbjct: 123 MAMYRAKANGKNRFVFFSKEMSIAQNEIQFLEGELSKALQQNEFFLEYQPQVSTKTKQII 182

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EALI+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + +
Sbjct: 183 GFEALIRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKV 241

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++       +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI
Sbjct: 242 GVNLSVVQFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGI 301

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            +++DDFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +I
Sbjct: 302 QISIDDFGTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIVSSIITLSKELNLKVI 361

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  E + + L +  CD+IQ   ++ P+    +  LL ++
Sbjct: 362 AEGVETEEEWEFLHKQNCDHIQGFFISKPVSSKDVWMLLHKK 403


>gi|120597369|ref|YP_961943.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella sp. W3-18-1]
 gi|146294491|ref|YP_001184915.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella putrefaciens CN-32]
 gi|120557462|gb|ABM23389.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
 gi|145566181|gb|ABP77116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
          Length = 859

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/575 (20%), Positives = 231/575 (40%), Gaps = 23/575 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                     I+   ER  + +    + V   D+    +   P   ++L +AS       
Sbjct: 293 ASRVNSLLARIYQQKERAKITLESIAEAVILTDVDARVIYMNPRAESLLNMASCYAINQT 352

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L  +        + +              + ++  A      M   I  + N + +I
Sbjct: 353 ---LASLLKAGEQLNQAVFTCIRLGETAPQVEKIKLLTA--TPRIMERSISNLRNHDKEI 407

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + I  DIT+++     +   A  D++T + NRQ+F +RL +  D +         V 
Sbjct: 408 VGTVVILRDITQEELLKRQLQKRADFDSITLLLNRQAFDERLLSFADNAKA-----IAVC 462

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D++++K IND  G A GD +L  + + +   L   ++L R+ G+ FG+++ + +    
Sbjct: 463 YLDLEQFKLINDSCGHAAGDRMLAMVAKVMQACLGPQELLGRIGGDEFGLVICNRSALSV 522

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +        +     +N       V  SIG A   +  I + E+LK+A++A   AK +G 
Sbjct: 523 VQLLKQISAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACLAAKAKGA 582

Query: 690 NHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQW 744
           N +  +                   +  A+E +EL L Y PI  L    +   +E L++ 
Sbjct: 583 NQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGTGPQRQRMEILLRI 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    ++ ++F+  AE   ++  I+  ++ +    +         P   I IN++   
Sbjct: 643 QEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLHP--VLWPDHCISINLSGNS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    + E +             I    +E+  + N  R   +L +LRK+G S  LDDFG
Sbjct: 701 LGAEGMVEYIAQQQRVFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 761 SGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQD 820

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            I  L  +G +Y Q   +  P   +    L +E++
Sbjct: 821 IIDRLQTIGINYAQGYAIGRPQPLS----LYREQY 851


>gi|332991657|gb|AEF01712.1| response regulator/GGDEF/EAL domain-containing protein [Alteromonas
           sp. SN2]
          Length = 744

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 194/439 (44%), Gaps = 14/439 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E       +   AF+D LT +PNR  F++ L      +  +     +V +ID++ +  IN
Sbjct: 313 ENVNLFHQLRNAAFRDWLTRLPNRNEFINMLDKPHIFACEN----CSVALIDVNHFSDIN 368

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   G+++L +++ R          + R+  + FG+I  S+      A     +   
Sbjct: 369 DGLGQEAGNELLRAISDRFKACFDDSVKIGRIGADVFGLIGPSD------AVNPDNINSL 422

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                 + +  + V  ++G       +    E+LK   +A+  AK    ++ E F     
Sbjct: 423 FQSSFKVSDHTLPVNVTMGLCQLDDKRNIGLEILKRINIALNRAKKNISDNFEYFAKDIE 482

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 ++    L       +L L + P + L+ E++VG+E L++W     G IS + F+
Sbjct: 483 DKTTWRLEMIRRLRSDFMARKLELWFQPQVDLVSEKVVGMEGLLRWPDGNNGYISPAVFV 542

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  +++E     +   ++      + + +NI+     D      +   I
Sbjct: 543 PLAEYSGLIVDIGEWVIEEACHRLKDLKEANFG-DLRVAVNISMPQFRDRSFVNKVLGTI 601

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S +   PS ++L  +ESVVM  P+     L  L++ G+++ +DDFGT  S +SYL  +P 
Sbjct: 602 STSKCDPSLLELEITESVVMDEPQIVIDALRTLKEHGVAIAIDDFGTGFSSMSYLQQLPL 661

Query: 879 DTVKFNGSLMTGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + S +      + A+L  +I+ +   +    IA+ I  +   + +  +GC+  Q 
Sbjct: 662 DRLKVDRSFIRDIEPGKSAVLAETIVTLGNKLGLLTIAEGIETKEQAEYMIELGCNEAQG 721

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+ F  ++  L  +
Sbjct: 722 FFYAKPMPFTELMDYLVSQ 740


>gi|28975365|gb|AAO61794.1| ScrG [Vibrio parahaemolyticus]
          Length = 568

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 235/560 (41%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNQGFYEQLGINAGRI--NLDRWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+     +D+ +     R+   +R+R  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSKRVDAHINTDNTRVTTTYRLRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  +   +       +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLLLDIEEHV----CSTDTPTSICYIQINEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + + ++  L + +  L      + R+  + F I++  + +   +  +A  
Sbjct: 186 KSYLNQYGNELVNGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILIQDDCSIDTLQAYAET 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + +  + 
Sbjct: 246 IKQTYHEAVVEEGQYLGSNISIGLYPCIDPAHSADEILRKAARTCQYASEQNKDRIAIYS 305

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +         I++ L  A+E   L + + PII     E+V  E+L++W   ++G I  
Sbjct: 306 QRTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIINAKSSEVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I  +   +  +  + I  +R++     + + +N++   L++ E    +
Sbjct: 366 DEFIPVAENKGLIVELGYQVFAKACQFIKQYRERYQNE-VRVNVNVSVLQLMNGEFPSRI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +   +P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEAGVAPQSIVLELTETFILDNNQTAMAPLNTLRELGFALSLDDFGSGYSSLNCFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M       ++ + I         T+MG 
Sbjct: 485 DLPMTQIKIDKSMAWKTLTNHSSREYLKFLIAMCHENNIEVVIEGIEDAKMCDFFTQMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|297584147|ref|YP_003699927.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297142604|gb|ADH99361.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
          Length = 775

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 235/436 (53%), Gaps = 7/436 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +K+L  +   A  D+LTG+PNR+  ++ L  ++D ++   N    ++ ID+D++K +N
Sbjct: 336 DLQKALNKMEHVAKYDHLTGLPNRRMIVNELEMLID-ASEKKNETFALLFIDMDRFKTVN 394

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L  +  ++ + ++  D + R  G+ F I+L    +  +I   A  ++ +
Sbjct: 395 DTLGHKAGDELLKQVAEKLKQSVRDADKIGRYGGDEFIILLKDV-DEKEIRQVATRIKHT 453

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSS 699
                NL  +    + SIG + +     ++ +++K A++AMY AK  GG H   ++ +S+
Sbjct: 454 FIHAFNLEGKAFYTSPSIGVSMYPEDGTSAIDLIKYADIAMYDAKSSGGVHYRMYQTMSA 513

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               ++++++++   V  ++LY++Y P+ ++   E+ G EAL++W HP+ G I   EF+ 
Sbjct: 514 DVHRKLLLEDEIRSVVPENDLYVMYQPVHKIDTGELTGFEALMRWRHPEMGEIMPGEFIG 573

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +A+E  MI  +  +++E  ++ +  W  +     I I IN++S+ L D +    ++ +++
Sbjct: 574 VADETGMIVPMGRWIMEEASKQLQFWNRKGIRH-ISISINLSSRQLYDPDFLSMLREVLA 632

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  +++L  +E   + N ++ + +L  ++K+GIS+ LDDFGT+ S ++ L   PFD
Sbjct: 633 TKEIEAGQLELELTERG-IYNEDQLKEILLEVKKLGISVVLDDFGTERSSMTMLNRFPFD 691

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S+     + E   ++L SI+  AK+    ++A+ I     +K    +G D  Q 
Sbjct: 692 RIKVDQSVFQATETNEDAQSLLLSILDAAKHFGLEVVAEGIEHIYHMKLARELGFDTGQG 751

Query: 938 SHVASPLGFNSILKLL 953
            +   PL      +LL
Sbjct: 752 YYYNKPLLAEKAEQLL 767


>gi|260901875|ref|ZP_05910270.1| protein ScrG [Vibrio parahaemolyticus AQ4037]
 gi|308108100|gb|EFO45640.1| protein ScrG [Vibrio parahaemolyticus AQ4037]
          Length = 568

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 236/560 (42%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNQGFYEQLGINAGRI--NLDRWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+     +D+ +     R+   +R+R  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSKRVDAHINTDNKRVTTTYRLRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  +   +       +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLLLDIEEHV----CSTDTPTSICYIQINEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + + ++  L + +  L      + R+  + F I++  + +   +  +A  
Sbjct: 186 KSYLNQYGNELVNGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILIQDDCSIDTLQAYAET 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + +  + 
Sbjct: 246 IKQTYHEAVVEEGQYLGSNISIGLYPCIDPAHSADEILRKAARTCQYASEQNKDRIAIYS 305

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +         I++ L  A+E   L + + PII     E+V  E+L++W   ++G I  
Sbjct: 306 QRTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIINAKSSEVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  +I  +   +  +  + I  +R++     + + +N++   L++ E    +
Sbjct: 366 DEFIPVAEKKGLIVELGYQVFAKACQFIKQYRERYQNE-VRVNVNVSVLQLMNGEFPSRI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +   +P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEAGVAPQSIVLELTETFILDNNQTAMSPLNTLRELGFALSLDDFGSGYSSLNCFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M       ++ + I         T+MG 
Sbjct: 485 DLPMTQIKIDKSMAWKTLTNHSSREYLKFLIAMCHENNIEVVIEGIEDAKMCDFFTQMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|16125149|ref|NP_419713.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|221233877|ref|YP_002516313.1| sensory transduction protein kinase [Caulobacter crescentus NA1000]
 gi|13422161|gb|AAK22881.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|220963049|gb|ACL94405.1| sensory box GGDEF/EAL protein [Caulobacter crescentus NA1000]
          Length = 677

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 207/437 (47%), Gaps = 10/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  +     A  D+LT +PNR+ +   L   ++ +           VID+D +K IN
Sbjct: 217 EARRLSDENDRLANLDSLTDLPNRRRYFAELDARVEAARQSGRGFVA-GVIDLDDFKPIN 275

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L+ + RR+      P + ARL G+ FG+I+ +      +      +  S
Sbjct: 276 DAFGHATGDRLLIEVGRRLKAFDGAPILAARLGGDEFGLIIDAALEPDALRVLGRELCAS 335

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +    +L      V ASIGF  + S   TS ++ + A+ A+YHAK  G      F     
Sbjct: 336 LQATYDLRGVRAQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAVVFDERHE 395

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               D  ++++ L  A    E+ + + P++ ++ +  + LEAL +W  P+ G I    F+
Sbjct: 396 AAIRDMAVVEQALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVFI 455

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE    I  I   ++ +  R++ +W        + + IN++++D+   E    + A++
Sbjct: 456 GAAERSGQIVEITRLLVAKALREMRAWP-----MDVRVSINLSARDIASMENVRRLLAIV 510

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S++  +P RI    +E+ ++ + +++R  L    ++G+   LDDFGT  S LS+L  +P 
Sbjct: 511 SESCIAPHRIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPL 570

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S ++          I+R+++ + +N+    + + +  E     +  +G   +Q
Sbjct: 571 DKLKIDASFVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQ 630

Query: 937 DSHVASPLGFNSILKLL 953
             H A P+   ++   L
Sbjct: 631 GYHFARPMPAEAVPGYL 647


>gi|325526719|gb|EGD04239.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia sp. TJI49]
          Length = 591

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/588 (19%), Positives = 228/588 (38%), Gaps = 25/588 (4%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            + +    TG       +   R + A   +   ++                 + G  + +
Sbjct: 9   GLPEARSRTGDPDDEAHASSTRVADAAWQAAHPMFLCAADGTLGWVNHAFEVMTGRPAAA 68

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFR-----VRAADNQFHWMIIR 498
           + G           +       ++D      R  R   E R     V   D +F      
Sbjct: 69  LVGQSTIQACLAAPDGSACAAGVIDLNGERWRVNRYDVERRPVRVDVARLDGRFSPAGDA 128

Query: 499 IRPMSNSNGDILR--------YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
                                Y+G   +  +  +        +  D+ T +PNR+ F +R
Sbjct: 129 DVDADAVPDAAGAHRARAADEYVGFLIESADDGQRDGERWYASNYDDATQLPNRRLFAER 188

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   +  +    + R +V+++ +   + I +VLG    + V   +  R+ + +      A
Sbjct: 189 LDLRIARARRTGD-RFSVVMVALSGLESIRNVLGQPGVEIVAQVVGERLRQRIPCAQAFA 247

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            +   +F +      +    A     +      P+  +   +      G A++  +   +
Sbjct: 248 CVGEGKFALF-----SDDASATLIDEVVAQACEPVEFVGAHLRAVTCAGIATYPDNGDDT 302

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             +++ AE+A+  A+  G + V  F        S R  ++  L  A++  +  LVY P +
Sbjct: 303 ETLMRRAEVALSSARDAGASGVVHFSSALELRASRRFELETLLDRALDRQQCRLVYQPQV 362

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L   EI  +EAL++W HP  G IS +EF+ IAE+  +I  I  ++++   R+I   R  
Sbjct: 363 TLATGEIAQVEALMRWRHPAHGEISPAEFIPIAEQRGLIDRIGEWVIDTACREIGKLRHV 422

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
               P  + +N++ +      L E ++  ++++   P  +++  +E V+  + E +   +
Sbjct: 423 VRHLP-RVCVNVSPQQFERGNLLEIIERALTRSGLVPQCLEIEITEGVLFADTEAALRTI 481

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             +R++G+ + +DDFGT  S LSYL   P + VK + S +          A++ +II MA
Sbjct: 482 HAIRELGVEVAVDDFGTGYSSLSYLTRFPINRVKIDRSFVAPLPGDAGSAALVSAIIAMA 541

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +   + A+ +        L  +GCD  Q    A P    S+  LL 
Sbjct: 542 HALGMRVTAEGVETVEQADRLRELGCDEAQGFWYARPHTIASLGTLLA 589


>gi|222147676|ref|YP_002548633.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221734664|gb|ACM35627.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 433

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 210/423 (49%), Gaps = 10/423 (2%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N     +R+ ++    A D     TV ++++D +K IND+ G   GD++L  +  R
Sbjct: 2   TGLGNHHRLQERIRSLSAERAADP-APFTVALVNLDGFKPINDLFGSLAGDEILCQVAHR 60

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   +    I+ R  G+ F ++L      +        ++  ++ P +L +R + ++AS+
Sbjct: 61  LKACIPDGAIVTRHDGDEFAVVLPLIFEQISAERIGNLIKDVLSAPYDLGDRNVRLSASL 120

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVE 716
           GFA +  +      ++K+AE A+Y +K RG   +  +     +  R    +++ L  A+ 
Sbjct: 121 GFAIFPFAGDDFETLMKSAETALYRSKRRGRGQITVYSREIAQEMRRSTQLEQALRNAII 180

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N  +   + PI+ L+D +++G EAL +W  P  G +S + F+ +AE+   I  ++  +L 
Sbjct: 181 NDAVDTHFQPIVSLVDGKVLGFEALARWIDPDLGFVSPAIFVPLAEDRGFIDTLSETLLR 240

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           + A   ++W  +     +F+  N++S  L D+       ++I+     PSR++L  +E+ 
Sbjct: 241 KAAEAALTWPRE-----LFLSFNLSSVQLTDSGTASRTLSIINSVGLDPSRLELEITETA 295

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           VM + + +  ++  LR  G+ ++LDDFGT  S L  L    FD VK + + ++  T    
Sbjct: 296 VMSSADMAGRIIAELRAAGVRISLDDFGTGQSSLGRLREFTFDKVKIDRAFVSAITTDTT 355

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+R+II M + ++  ++A+ I    +   L  +GC   Q  +   P    + L+ L 
Sbjct: 356 SEHIVRAIITMCEGLKLEVVAEGIETLSEATRLLALGCTMGQGYYFGRPADAMATLRYLS 415

Query: 955 ERF 957
            ++
Sbjct: 416 RQY 418


>gi|119503087|ref|ZP_01625172.1| Hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [marine gamma proteobacterium
           HTCC2080]
 gi|119461433|gb|EAW42523.1| Hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [marine gamma proteobacterium
           HTCC2080]
          Length = 628

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 222/456 (48%), Gaps = 27/456 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K     +   A+ D LT +PNR+SF+D+L   L+ +A        ++++D+D +K+I+D
Sbjct: 163 LKAQQVQLRTLAYYDPLTSLPNRRSFVDQLRGSLEETANHQR-DLGLLMVDLDHFKRIHD 221

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI--------------------LARLSGNRFGIIL 621
            LG A+ D +L  +  R+ E L                         L R  G+ F II+
Sbjct: 222 PLGEALSDSLLTVVAARLEERLSMHAPRGPDPHEAIDRSELEEMTIDLMRPGGDEFNIIV 281

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +  +   + D A  + +++  P+   +  + ++AS+G A      +    +++ A +A+
Sbjct: 282 RNLQSRQALLDIASLVLETLNAPLIFSDNHLVLSASVGIAIAPEHGLEPEAIIRRANIAL 341

Query: 682 YHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGL 738
             AK  G N    +  S       ++ ++ DL  A+E+  +L++ Y P I      I G+
Sbjct: 342 SAAKLSGRNRFRLYDDSLADDADRKLRLEADLRGALESPDQLFMAYQPQIDTSSGRISGV 401

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G IS + F  +AE   +I  +  ++ +R+  DI S  D      + I I
Sbjct: 402 EALVRWSHPELGAISPALFAPLAEGSGLISQLGDWIFKRVDSDIQSLNDVLPSY-LTISI 460

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++          E ++  +S+   +   I+L  +E V+M + + S L L  LRK G  L
Sbjct: 461 NLSPLQFTQANFLETLKLRLSELQSNNE-IELELTEGVIMSDADDSLLKLHELRKAGFRL 519

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S LSYL   P +T+K + + +     E   +I+R+I+ +A+ +   ++A+ 
Sbjct: 520 AIDDFGTGYSSLSYLKDFPVNTLKIDQAFVANLGNESGNSIVRAILALAEALNLDVVAEG 579

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +   + L R  C+ +Q   +A P+    ++++L
Sbjct: 580 VETQEQAQFLKRHHCNILQGFLLAKPIPLKEVIEIL 615


>gi|289641669|ref|ZP_06473829.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Frankia symbiont of Datisca glomerata]
 gi|289508538|gb|EFD29477.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Frankia symbiont of Datisca glomerata]
          Length = 955

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/470 (25%), Positives = 209/470 (44%), Gaps = 29/470 (6%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILD------ 556
           +   + +R +         +  +E      A  D LTG+ NR +  +RL   L       
Sbjct: 474 DREVEFVRTVATVLSAAAIRHQVERDANHRALHDELTGLANRTALFERLGQALKQGRPEN 533

Query: 557 -----------LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
                       S     LR  ++ +D+D +K +ND LG  +GD +L  +  R+   ++ 
Sbjct: 534 DHQAQGRSKRGRSKQSWQLRTGLLFVDLDGFKGVNDSLGHHIGDRLLCEVATRLRGAVRP 593

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D +ARLSG+ F ++         +   A  +  +++ P+ L   +++V+AS+G A    
Sbjct: 594 GDTVARLSGDEFAVVCEKILTETALCAIAERVVSALSEPMILDGCQVSVSASVGVALSGP 653

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLV 723
                S +L+ A++AMY AKH+G      F  S   +  DR+ I+ DL  A++   L L 
Sbjct: 654 DIPDPSGLLQAADIAMYGAKHQGRGRYLLFEESMRNASLDRLTIENDLRNALDTDGLQLR 713

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y  ++ L   E+VG EAL++W HP+ G +    F+ +AEE  ++  ++ + L        
Sbjct: 714 YQSVVSL-GGEVVGAEALLRWQHPERGLLYPEAFLPLAEETGIVVPLDRWALRTACHTAA 772

Query: 784 SWRDQANMPPI-----FILINIASKDLLDNELCEGMQALISKTLYSPS-RIKLSFSESVV 837
           +W       P       I +N++ +   D      ++AL+  T       + L  +ES +
Sbjct: 773 AWAAAWAAGPPPARRPHISVNVSIRQFTDPGFLPDLEALLRITNADHRYHLCLEITESDL 832

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
             N E     L  +  +G+++ +D+FGT    L+ L  +P D +K +   + G       
Sbjct: 833 RDNDETVTAALQAVHALGVAIHVDNFGTGHLSLTRLRGLPLDGLKIDRRFIGGLIDDPAS 892

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            AI  + I +A  +  T IAK +     +  LT + CD +Q  + A P  
Sbjct: 893 YAIAAAGIQLAHALGMTAIAKGVETPEQLAALTDLRCDLVQGDYFARPEP 942



 Score = 48.0 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 2/103 (1%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                  ILG     +      W   IH  +R              R   Q   R    D
Sbjct: 31  VNTAACQILGRGEAELLHT--AWDALIHPGERAKRPDDTSPHAVGCRDGQQDVIRFVRPD 88

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                 +     + + +     ++    DIT +  +   +   
Sbjct: 89  GSMVHALAITTLLRDGSDPRPHHLVQFQDITREVTARHHLRLL 131


>gi|261251060|ref|ZP_05943634.1| hypothetical protein VIA_001079 [Vibrio orientalis CIP 102891]
 gi|260937933|gb|EEX93921.1| hypothetical protein VIA_001079 [Vibrio orientalis CIP 102891]
          Length = 541

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/437 (26%), Positives = 212/437 (48%), Gaps = 11/437 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +     +    NA  D LT +PNR+  ++ +  +++     DN+   +M+ID+  +K+
Sbjct: 91  IQQLHMLAQEEKHNALHDPLTALPNRKHCIETVNFLVE-----DNIPFQLMLIDVVNFKQ 145

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ +  R    L+  D +AR+ G+ F +++ +  +     D A  + 
Sbjct: 146 VNDGMGHFCGDQLLIQIGHRARSHLRKGDFIARIGGDEFVVVMPN-QSMDHAFDIAHKIN 204

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
           +S+  P ++   E+T +  +G  S+        +++  A++AMY AK  G      S  +
Sbjct: 205 QSLKRPFSIDGFELTSSVIVGIGSYPKDGACVEQIINAADVAMYWAKTHGNEVASFSAHM 264

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S     ++ I   +  A+EN+E  L Y PII L    +   EAL++W       I+ S+F
Sbjct: 265 SQDARRKLQISRQIDQAIENNEFQLFYQPIICLEHNIVCSYEALMRWLDEDGKPITPSDF 324

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+   I +I  +ML+++A DI          P  + +N+++KDL+   L   +  L
Sbjct: 325 IAIAEQSNKITSITEWMLDKVASDIEQLITAGIHCP--VHVNLSAKDLMSKNLENQLSRL 382

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                     + L  +E+  +        LL RL+++G  ++LDDFGT  S LS L  +P
Sbjct: 383 AFLNKNFVKMVVLEITETTAINRLRSPATLLERLKQMGFRISLDDFGTGFSSLSLLRDLP 442

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      E+  +I+ + I +A  +  T++++ +  E  +  L   GCDY+
Sbjct: 443 VDQIKIDQSFVYQMQKNERNRSIVANSISLAHGLGYTVVSEGVEHEEVVNILREYGCDYV 502

Query: 936 QDSHVASPLGFNSILKL 952
           Q  + +  L     +  
Sbjct: 503 QGYYFSPALPLERAINW 519


>gi|331014383|gb|EGH94439.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 922

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 218/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 478 VRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGR-QLVVMFIDLD 536

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L+    R+   ++  D+LARL G+ F  +L  +         A
Sbjct: 537 RFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFA-VLSIDTPLQTGTCIA 595

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  I  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 596 QRILTAFEQPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNGGRDSFA 655

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++ LEALI+W  P   
Sbjct: 656 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNTGDLLALEALIRWRMPDGR 715

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+   E L +I  ++L+ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 716 IIAPESFLPALEGLRLIGRLDLYMLKRVITILAQ-PENGHWPP--VHVNCSSYSITRPAF 772

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 773 AAEVLAMLAEHNVAPGRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 832

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 833 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 892

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + ++PL    ++
Sbjct: 893 EIGATQAQGYYFSAPLPIEQLV 914


>gi|330955108|gb|EGH55368.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 713

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/466 (26%), Positives = 213/466 (45%), Gaps = 12/466 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQTISAVNRAFTEITGYSESEAIGKTPRLLAS 313

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 314 GQH--DSAFYAAMWHQLAAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDNLLTHFVA 369

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F +RL   L  S    +L   V+ +D+D
Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRTLFENRLQAALLHSEESGSL-GAVLFLDLD 428

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCGFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L    + G EALI+W+HP +G++
Sbjct: 549 YTCDLSDQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGDV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E
Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            ++ L++     P  ++L  +E+ +M   + +  +L +L+ +G+ L
Sbjct: 668 RIEQLLTDNGLEPGCLQLEITENFIMSQTQEALAVLHQLKTLGVQL 713



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 8/153 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +        + G + 
Sbjct: 121 LVIVRDITQLKQARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRLTGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ +++R      +      R        R+R ++       +  +P
Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIEQMKQHGFVR----DLRVRIRNSNGDVRLCELSSQP 236

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  +  D L  +    DITE ++  E +   A 
Sbjct: 237 VIIAGEDCL--LTTTRDITESRQMQEKLHLAAT 267



 Score = 41.9 bits (97), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 34/136 (25%), Gaps = 9/136 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +       + +       D +    +     +          G+    + G     L  
Sbjct: 10  REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGIPLDEVIGKTPTELNL 69

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    ++  +P    +  I   + 
Sbjct: 70  WAVPGIGPKVLLQL-----QTGDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122

Query: 515 IANDITEQKKSLEGIL 530
           I  DIT+ K++ + + 
Sbjct: 123 IVRDITQLKQARQQLQ 138


>gi|241203375|ref|YP_002974471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857265|gb|ACS54932.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1059

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 127/589 (21%), Positives = 242/589 (41%), Gaps = 35/589 (5%)

Query: 389  HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             +         +     R  LA+      +W+             +  + GL   +    
Sbjct: 469  ALDELSSREGELAELSSRLDLALNSYQCGIWEARPGLGGSIWNERMHELYGLTPRNGFMT 528

Query: 449  IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               WL  IH  DR            +         RV   D    ++    +       +
Sbjct: 529  EEIWLSRIHPEDRSLALES-ARHFKHNGDTHTLVCRVIVDDGSVRYVRSVGKVHQTGTSE 587

Query: 509  ILRYIGIANDITE-------QKKSLE--------------GILCNAFQDNLTGIPNRQSF 547
             ++ +GIA D TE        K + +               I  N+  D LT + NR+  
Sbjct: 588  -MKIMGIAFDATEDVLMTIRLKAAKDDAVAKNIELELVKNRIEHNSLHDPLTALANRRKL 646

Query: 548  LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
               L + L         + +++ ID+D++K IND LG A GD +LV  ++ + + ++  D
Sbjct: 647  DIALES-LTHDGRQQRQKFSILHIDLDRFKDINDTLGHAAGDAMLVHASKVLAKNVRGSD 705

Query: 608  ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            I+AR+ G+ F I+ +   +       +  + + +  PI+          SIG A      
Sbjct: 706  IVARIGGDEFVILALDVGDKEMA-QLSTRIIEEMRQPIDFQGFSCRCGVSIGIALANGIH 764

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYH 725
            + + ++L NA++A+Y AK  G N  E F  +      +     +++   ++N E    Y 
Sbjct: 765  VDARKVLINADIALYRAKSTGRNRFEFFNHNLQADIINTKRTADEILAGIDNGEFTAWYQ 824

Query: 726  PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
            P       E+ G+EAL++W HP  G ++  +F+ IA+E+ +++ ++  +LE    D + W
Sbjct: 825  PQFCARTMELTGVEALVRWKHPSKGWLAPDKFLRIADEINVVQMLDRIVLETALHDKMRW 884

Query: 786  RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
              +  + P  + +N++++ L D  L E +  L       P  +     ES+ +   E   
Sbjct: 885  TARGIVVP-KVSVNVSARRLHDGSLLESLADL----HIRPGELSFELVESIFLDESEDVV 939

Query: 846  -LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
               L R++ +GI + +DDFGT  + +  L  +    +K +  L+       +  A++ SI
Sbjct: 940  SQNLERIKALGIDIEIDDFGTGHTSIVSLLKLKPKRLKIDRQLVQPIVNASQERALVSSI 999

Query: 903  IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            I +A+++    +A+ +        L  +GCD +Q    + PL F+    
Sbjct: 1000 IEIARSLGVETVAEGVETAAHAALLRDLGCDILQGYAFSQPLSFDDFTA 1048



 Score = 71.5 bits (174), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +    L+     +++ A       +    +R +LA+  S   +W+ +     +      A
Sbjct: 301 IFFATLLLGERNRNITALETREAKLLELSQRLNLALESSNIGIWELEDHSSSLLWDARAA 360

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            + G A+      +  WL  I   DR+       S            +R+   +     +
Sbjct: 361 ALHGKAAKEGSRVLDEWLAAILPEDRETAEVHFFSCSIAGVACTAQ-YRILLGNGGIRHL 419

Query: 496 IIRIRPMSNSNGDILRYIGIANDITE 521
                  +++ G + + IGI  D+T 
Sbjct: 420 RSVGAFYTDAAG-VSKTIGIVWDVTA 444


>gi|326795284|ref|YP_004313104.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Marinomonas mediterranea MMB-1]
 gi|326546048|gb|ADZ91268.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Marinomonas mediterranea MMB-1]
          Length = 822

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 220/441 (49%), Gaps = 6/441 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++     E     A  D LTG+ NR     RL  ++  +        +++ +D+D++K +
Sbjct: 379 SQLDTEREKFNYLAHHDPLTGLSNRLLGTLRLKEVI-QANKKTRKLFSLLYLDLDQFKNV 437

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD++LV++   + E++    ++AR+ G+ F IIL   ++       A ++ +
Sbjct: 438 NDSLGHDAGDNLLVNVANTLNEIVSDYGVVARMGGDEFMIILDKVSSVTATEAIAKSINQ 497

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
           ++  P  L ++ I V++SIG   +         +++NA+ AMY  K RG +  + +  + 
Sbjct: 498 ALRQPYFLNDKTIFVSSSIGICVYPDHGEDVDVLIRNADTAMYETKKRGRDGYQIYTDNL 557

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +RV I   L  A++ SEL + Y P   L+  ++VG EAL++W HP+ G +  +EF
Sbjct: 558 TEEAKERVSISTGLHNAIDKSELDVFYQPQYNLLTGKLVGAEALVRWRHPEKGLLLPAEF 617

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQA 816
           + +AEE  +I  ++ ++  R++ D+ SW +Q   +  + I +NI+ +     EL + +  
Sbjct: 618 IDVAEETGIISELDDWVFGRVSADVESWLEQGLSLESLRISVNISGRKFFSAELIDRLDR 677

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
              +       + L   E  VM N   +R L+  LR  G  + +DD GT  S LS+L  +
Sbjct: 678 FNEEKPEIVELLTLEVHEQDVMKNAIYARELIQDLRTKGYKVAIDDIGTGRSSLSFLQGL 737

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + +++   +  E   A +++ + +A  +   +IA+ I  E    +L   GC  
Sbjct: 738 PLDYMKLDRTVVHNVSSGENDFAFVKAFLSLAHELNVEVIAEGIEEEQQANKLREAGCHV 797

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q    + PL     L++LK 
Sbjct: 798 MQGFMYSHPLPSGGWLEILKS 818


>gi|332671227|ref|YP_004454235.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
 gi|332340265|gb|AEE46848.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
          Length = 795

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 144/779 (18%), Positives = 286/779 (36%), Gaps = 73/779 (9%)

Query: 233 SIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIAC 292
            +    L  +V L  G        +   L+   ++            A            
Sbjct: 21  LVGGLLLVSVVMLTPGWAGEILWDAVPLLAVGAMVLGVRRNRPAAARAWWWLTAGVAWWT 80

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK--------GYERAVLLIPAW 344
              +   ++Y  +  + +       + +     ++    +         +E A +     
Sbjct: 81  AVDVGWTTWYVVVGDSDLVPWWYDVLYVPTYVLLVVGLARLPRNSLRVRHETATMDAVVV 140

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           ++ F       +  +    + +  PA    ++ + + +G  ++   L   Y ++      
Sbjct: 141 VVGFALLYWAIVFRSVLGPDVVHDPARSLSVLSLAMGLGVVLMTARLWFRYGNRNRAYAL 200

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-LGLASGSMHGPIRNWLPY-----IHI 458
               +      D+++   +  D +   P I+ +   L  G        W        +H 
Sbjct: 201 LGWGVTASTFADMLYTVTLTGDGL---PGISVLDTSLTEGVGSASWLVWFVLFGTAALHP 257

Query: 459 NDRDNFRTILDSFVGYRRGRL--------QYEFRVRAADNQFHWMIIR------------ 498
             R +      + +   RG +           F +         +               
Sbjct: 258 ATRGSEDAAPSTALTLARGIVFFLVVTVGPVTFLLTLRTGASVTLAWEDLAVPLLTVGLL 317

Query: 499 -----IRPMSNSNGDILRYI-------GIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
                 R +  ++    R I        ++  + EQ+   E +   A  D LTG+ NR  
Sbjct: 318 SAFLVARLVVGTSTAQRRAIQLDRQATELSRALHEQRALQELLSHQARHDPLTGLGNRAH 377

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F DRL      +A+D      V++ID+D +K +ND  G   GD++L  +  R+  ++   
Sbjct: 378 FNDRL------AASDGAGGRAVLMIDLDGFKSVNDDNGHPAGDELLSQVAARMRGVVGDR 431

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D +AR+ G+ F ++L    +     D A  + ++I     +  + + VTASIG      S
Sbjct: 432 DTVARIGGDEFAVLLEH-TDESAAHDAAWRVVRAIGEAFVVDAQAVRVTASIGVRLLDGS 490

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVY 724
             T  E L++A+LA+Y AK  G N V  F          R  +   L  A+   EL + Y
Sbjct: 491 VGT-EEALRDADLALYAAKAAGKNQVCVFDPRLRAEQVGRSRLVSGLRHALSRDELVVHY 549

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P++ L+  E++ +EAL++W     G +    F+ +AE+  +I  I   +L R   D   
Sbjct: 550 QPVVDLVTREVLSVEALLRWQSA-RGLVMPDRFIPVAEDTGLIVPIGDHVLRRATADARV 608

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG----N 840
           W D      + + +N++ + L   ++   +   +         + L  +E+ ++      
Sbjct: 609 WFDAHG---VGVHVNVSGRQLRRPDVVPTVLGALDAAGLPGRALVLEITETALLATGKPE 665

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRI--- 896
                  L  LR+ G+ + +DDFGT  S L+YL  +P D VK +G+     +        
Sbjct: 666 TALVAAHLSELREHGVRVAIDDFGTGYSSLAYLQRLPVDIVKIDGAFTRFAADPGDEARR 725

Query: 897 --AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             A+  +I+ +   ++   +A+ I    + + +  +GC   Q      P+  + I  LL
Sbjct: 726 RRALATAIVDLCATLDLQAVAEQIETAEEAEAVRALGCPLGQGYLFGRPVPRDQIAPLL 784


>gi|313897230|ref|ZP_07830774.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312957951|gb|EFR39575.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 560

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 230/544 (42%), Gaps = 24/544 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  ++  DR   + ++     L    + G I  W   +H  DR  F  
Sbjct: 19  YDTIVNSTDDYIYLVNMQEDRALISENMLQDFDLPDLIVPGLIPLWGDLVHERDRQRFDD 78

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +         E++VR   +++ W+I R     N  G+ + + GI +++ E K  +
Sbjct: 79  SITAMLNGETDEHNVEYQVRNRKHEYIWVICRGLLKRNDRGEPIFFAGIVSNL-ENKGKI 137

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D++TG+  + +  + +T +L+           ++++ +D +  IN++    
Sbjct: 138 ---------DSITGLFTQTACENSVTQLLEHKR-----NGGILLLGLDDFSHINELNDHI 183

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL   ++ +  LL     + R  G+ F I+        ++ +    +         
Sbjct: 184 FGDAVLRQFSQTMQRLLPASARMYRFDGDEFAIVYEQAT-RKQVRELYKIIHAYCNRRHF 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + +     T S G A +        +++K A+ A+  +K+RG N    F     +  R  
Sbjct: 243 IDDIGYFCTVSGGIAMFWEDGDNFLDLIKYADNALEASKYRGKNQCTQFSHELVQIKRRR 302

Query: 707 I--KEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +     L  +V     + YLVY P+I     ++ G EAL++W   ++GN+   EF+ I E
Sbjct: 303 LSIANQLQSSVLRGMQDFYLVYQPLINASSMKVEGAEALLRWSSSEYGNVRPDEFIPILE 362

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I     ++ +        W  +   P   + +N +   +L+ +L   ++  + +  
Sbjct: 363 SAGLIHQAGKWVFQEAVHTCKEWVKE--NPGFVMNVNFSYIQMLNEDLLPFIRRTLKQAD 420

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S   I +  +ES  +   +  +    +LR++GI + +DDFGT  S L  L  +P D VK
Sbjct: 421 LSAKHIVIELTESCFVTEMDALKRSFQQLREMGIRIAIDDFGTGYSSLGMLSQMPADIVK 480

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   ++   E     + + ++I +  ++   +  + +  + ++K +  +  D IQ  + 
Sbjct: 481 IDRLFISSIHENSFHQSFINAVIQLCHSVGIRVCVEGVEEQEELKVVRDIQADNIQGFYF 540

Query: 941 ASPL 944
           + P+
Sbjct: 541 SRPV 544


>gi|224826054|ref|ZP_03699157.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
 gi|224601691|gb|EEG07871.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
          Length = 920

 Score =  398 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/582 (20%), Positives = 255/582 (43%), Gaps = 45/582 (7%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS---MHGPIRNWLPYIHIN-- 459
           ++ +  +  S   VW +      +        ++G+   +     G + ++    H +  
Sbjct: 336 QKLAATLDVSRVSVWRYQPDHQEL------ECLIGIDRDADHHFAGALLHFAA--HPDYF 387

Query: 460 ---DRDNFRTILDSFVGYRRGRLQYEFRVRA------------ADNQF--HWMIIRIRPM 502
               R+ + +   +    R   ++ ++ +              A   +    +  R +  
Sbjct: 388 SALHRERYLSASHATSDPRLASMR-DYLLEHTVCSMLDAAVTLAGTHYGVICVEDRNKRE 446

Query: 503 SNSNGDILRY------IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +    +I         + +  +   + ++   +  +A+ D  TG+PNR   L +L  +  
Sbjct: 447 AWHPDEINFVCSSADVVALMMESGARLQAEGELHRHAYYDRFTGLPNRARLLMQLDEL-- 504

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
             +  ++     +++ +D    +N++ G   GD V++ L  R+  L +  +++AR++ NR
Sbjct: 505 AQSRSESPVFGCLILALDALPNLNELYGHDTGDQVILLLCERLARLAEPGELVARVAENR 564

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +IL+   +   I     A+ +++ +P+++  + I V  S G A           +L++
Sbjct: 565 FCLILLG-KDESSINRRVTAINETLNLPLDVNAQLIGVRVSAGLALSPQDSKEPLRLLEH 623

Query: 677 AELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AELAM  ++   +GG       +S+    R ++  +L  A+   +L+L Y P   L    
Sbjct: 624 AELAMQISRSSIQGGWVRFHEDMSTDWHRRHLLINELRQAIGTHQLFLCYQPYHDLKTRR 683

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             G EAL++W HP+ G IS  EF+ +AE+  +I  +  + L    +    WR Q   P  
Sbjct: 684 TRGAEALLRWHHPEHGFISPGEFIPLAEDSGVIVPLGEWALREACQQTAKWR-QGGQPEF 742

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++   L D    + +  +++     PS ++L  +E++ +         + RL+ +
Sbjct: 743 TISVNVSLLQLEDPHFADLVAGILATAHLPPSALELEVTETLALRQSGSIEDNIRRLKAL 802

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETT 912
           G+SL +DDFGT  +  SYL   P + +K +   +       +  AI+R I+ M  ++   
Sbjct: 803 GVSLAIDDFGTGYASFSYLRRFPAEKIKIDKQFLDQVPDNHQDAAIVRMIVAMGHSLGAM 862

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  + I  E  +  L  +GCDY Q  H++ PL  +++ + L 
Sbjct: 863 VTGEGIENERQLAFLAEIGCDYAQGFHLSKPLEQHAMSRYLS 904


>gi|161525114|ref|YP_001580126.1| PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
           [Burkholderia multivorans ATCC 17616]
 gi|189350143|ref|YP_001945771.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
 gi|160342543|gb|ABX15629.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Burkholderia multivorans ATCC 17616]
 gi|189334165|dbj|BAG43235.1| signal transduction GGDEF/EAL domain protein [Burkholderia
           multivorans ATCC 17616]
          Length = 805

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/587 (21%), Positives = 244/587 (41%), Gaps = 24/587 (4%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIVRD 426
           L    +   +LI F  ++      +  + I S+ +R       A+    D +    +   
Sbjct: 214 LFLSYLAASLLIVFLGVRWAGRAQHQQRSIQSELDRSQALAEAALRSVADAIVTVGLTSG 273

Query: 427 RVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             T  P    +LG ++    G    + L  I  +   +   +L S        L  +  +
Sbjct: 274 IETVNPAAEQLLGTSARDCIGKPVNDVLALIDPSTGMSI-NLLPSLSNSGDATLTRDLEL 332

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
             AD     +   +  M N+ G  + Y+ I  D+T + + +E +   A  D LTG+ NR 
Sbjct: 333 LRADAPAVAVRASLSRMDNAPGRCVGYVLILRDMTREYQLIERLTWQASHDALTGLINRT 392

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +F  R+   L+  A        ++V+D+D +K++NDV G A GD +L  +T      L  
Sbjct: 393 AFERRVGEALNACAAT-----VLLVLDLDGFKEVNDVCGHAAGDALLREVTAVFQRCLGA 447

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWT 664
            D   RL G+ FGI+L +    L     A  +R S+             ++ SIG  +  
Sbjct: 448 DDAFGRLGGDEFGILLTATGGPLPDGGKAEQLRASLEAYTFCWDGERFKLSVSIGMLNLD 507

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSEL 720
               +  + ++ A++A Y AK RG N V         +S ++  +     +  A+E++  
Sbjct: 508 CRPESVEKAMQLADVACYVAKDRGRNRVHVAEPRDMSASRQAYHLEWSRRVKAALESNTF 567

Query: 721 YLVYHPIIRLMDEEIVG--LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            L   PI+ +         +E L++        +S   F+  AE    +  I+ +++  +
Sbjct: 568 QLYAQPIVPIQPALAAQQRIEILLRIPDADGKLVSP-VFLPAAERYGHMTMIDRWVVRTV 626

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R +               +N+++  + +    E ++  ++ +   PS++    +E+  +
Sbjct: 627 VRRLAQLER---RSDFECNVNLSAMSITNEGFVEFVKRELTTSGVDPSQLCFEITETSAV 683

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            N E +   +  LR +G    LDDFG   S  SYL  +P D +K +G L++  T    + 
Sbjct: 684 RNLEVASRFMHELRDLGCRFALDDFGAGMSSFSYLSKLPIDYLKIDGGLVSRMTSDCVKR 743

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            I+ +I  +A  ++   +A+ +  E   + L  +G DY Q  + + P
Sbjct: 744 GIVCAINDIAHLLQYRTVAEHVEDEETAEMLRSLGVDYCQGYYFSRP 790


>gi|227821010|ref|YP_002824980.1| putative sensory box/GGDEF family protein [Sinorhizobium fredii
           NGR234]
 gi|227340009|gb|ACP24227.1| putative sensory box/GGDEF family protein [Sinorhizobium fredii
           NGR234]
          Length = 446

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/425 (24%), Positives = 218/425 (51%), Gaps = 10/425 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ N Q    ++  +    A+D     T+ + ++D +K IND+ G   GD +L  +
Sbjct: 20  DPLTGLGNAQQLRHKVCELAAERASDP-APFTIGLANLDGFKPINDLFGPEAGDRILRQV 78

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            +R+   +     + R + + F ++L               +++ ++ P +L +R + ++
Sbjct: 79  AQRLTACVPEGATVIRTADDEFALVLPLVFERKSAEKLGQMLKEILSAPFDLGDRTVRLS 138

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCL 713
           AS GFA +  +     ++LK+A+ A+Y +K RG   +  +     +  +    +++ L  
Sbjct: 139 ASFGFAVYPFAGAEFEDLLKSADTALYRSKRRGRGQITVYSQEIAQEMKRATQLEQALRN 198

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   E+ + + PI+ L ++ +VG EAL +W  P++G +S S F+ +AEE   I+A+   
Sbjct: 199 AIIAEEIDVHFQPIVDLRNDGVVGFEALARWCDPEFGYVSPSVFVPLAEERGFIEALAEM 258

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L + A+  ++W  +     +F+  N++S  L+D      + A++ +    P R++L  +
Sbjct: 259 LLRKAAQTALAWPKE-----LFLSFNLSSAQLMDPATSGRLLAIVHQVGLDPRRLELEIT 313

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+ VM + + ++ ++  LR  G+ ++LDDFGT  S L  L    FD VK + + ++  + 
Sbjct: 314 ETAVMADADVAQKIVSELRAAGVRVSLDDFGTGQSSLCRLRDFSFDKVKIDRAFVSRISA 373

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            R +  I+++I+ M + +E  ++A+ I    ++ +L  +GC   Q      P    + L+
Sbjct: 374 DRASEHIVKAIVSMCEGLELEVVAEGIEDISEVLKLKALGCGMGQGYFYGKPADAVATLR 433

Query: 952 LLKER 956
            L +R
Sbjct: 434 YLSDR 438


>gi|288871295|ref|ZP_06117113.2| putative sensory box/GGDEF domain/EAL domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288863989|gb|EFC96287.1| putative sensory box/GGDEF domain/EAL domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 665

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/548 (21%), Positives = 239/548 (43%), Gaps = 23/548 (4%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++ WD+  D +  +P++ + LGLA   +    +  + ++H +DR+  +    +F+  
Sbjct: 29  SDYLYVWDLEGDVLLASPNMVSDLGLAGNRLANCSQMDIKWVHPHDRERVQKQYRAFIHS 88

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +   L  E++   A+  + W+  R +   ++ G  L  +G   ++ EQ + +        
Sbjct: 89  KEESLSLEYQALTANGSYIWLSDRAKMKRDTAGKPLLIVGTLRNM-EQYEGV-------- 139

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +TG+    S  DR    L+  A        ++++ ID +K IN +   + GD VL +
Sbjct: 140 -DQVTGLLRHSSGRDRFERTLEGRA---GFHEELLLLGIDGFKNINILNSHSFGDLVLRT 195

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             + I ++L     L R  G++F ++  +     ++      +R+  + P  +       
Sbjct: 196 TAQEILKMLPEQVKLYRYDGDQF-LLSGNHVRREEMLRIYEDIRQYASGPHRVNGCAYRF 254

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
           T S G  ++     +  E+ K A  A+  AK  G N    F       D + +   L  +
Sbjct: 255 TVSGGIIAYPEEAHSWVELEKGACAALRQAKENGKNQCVEFTAG--LLDELQLSHCLAQS 312

Query: 715 VENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            +N      LV+ PI      E+ G EAL+++  P    IS  EF+ + E   +I  + L
Sbjct: 313 ADNGFQGFRLVFQPICGADTLEVRGAEALLRYRMPDGKEISPVEFIPLLESSRLILPVGL 372

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE+       W +Q       + +N++   L D+  C+ ++AL+ K       + L  
Sbjct: 373 WVLEQAIIACKVWTEQ--NSDFVMDVNVSFVQLRDSGFCDKVEALLQKYSLPARNLALEL 430

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES  + N       L RL ++ I L++DDFGT  S L  L  I  D VK +   +    
Sbjct: 431 TESYFITNDANVNDSLERLNEMRIELSMDDFGTGYSSLGRLAEIGMDVVKIDRYFVKALH 490

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS-I 949
            ++     + S+I +  N+   +  + +  + + + ++ +  D +Q  +++ P+   +  
Sbjct: 491 ISQYNHDFVESVIRLCHNLGKAVCMEGVETKEEWETISLLNADMVQGFYISRPMEPEAFF 550

Query: 950 LKLLKERF 957
            K L   +
Sbjct: 551 QKYLTSSY 558


>gi|329847639|ref|ZP_08262667.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328842702|gb|EGF92271.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 723

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/431 (26%), Positives = 214/431 (49%), Gaps = 13/431 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  DNL+G+PNR++  ++L  +    +        V+ ID+D +K IND+ G A GD ++
Sbjct: 300 ALTDNLSGLPNRRALFEQLQRV---DSKRGAAHKAVVFIDLDGFKDINDIYGHATGDKLI 356

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           +     + E L     LAR+ G+ F ++L  ++   +   FA      +  PI + ER +
Sbjct: 357 MIAAAALKEFLPNHGSLARMGGDEFALLLGGKDADARCQIFAEKALDFLTKPIRIGERIV 416

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKED 710
            + ASIG AS     + S E+ + A+LAMYH+K  G   +  +     + R+ +  I+  
Sbjct: 417 QIGASIGIASGDLKTVRSQELFRRADLAMYHSKSSGKGRITWYDDELDAQRTRKQAIETG 476

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +   ++  E  +VY PII      I  +EAL++W     G +   +F+ +AE   +I+A+
Sbjct: 477 IREGLKRGEFDVVYQPIIEARHGTIASVEALVRWPRRPEGELVPDQFIALAESSGLIQAL 536

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             F+L R        ++  + P + + +NI+     D      +  ++++T +   R++L
Sbjct: 537 GQFVLRRAC------QEMGDFPNVRLSVNISPAQFRDVAFESKVADILAETGFPAQRLEL 590

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT- 889
             +E  ++ NPER+   +  L+ +G+++ LDDFGT  S + YL    FD +K + SL + 
Sbjct: 591 EVTEGNLIENPERAIAAVAALKALGVTIALDDFGTGYSSIGYLRRYDFDKIKIDKSLASQ 650

Query: 890 -GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +  A++   + +A  +   + A+ +  E  ++ L   GC Y+Q  + + P   + 
Sbjct: 651 VDRDPQAAALVAGTVNIANALGLAVTAEGVETEDHVRLLRLAGCQYLQGYYFSRPKPLHD 710

Query: 949 ILKLLKERFPL 959
           +L L  E+  +
Sbjct: 711 VLGLPAEKAAV 721


>gi|28869887|ref|NP_792506.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853132|gb|AAO56201.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 819

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 218/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 375 VRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGR-QLVVMFIDLD 433

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L+    R+   ++  D+LARL G+ F  +L  +         A
Sbjct: 434 RFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFA-VLSIDTPLQTGTCIA 492

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  I  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 493 QRILTAFEQPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNGGRDSFA 552

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++ LEALI+W  P   
Sbjct: 553 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNTGDLLALEALIRWRMPDGR 612

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+   E L +I  ++L+ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 613 IIAPESFLPALEGLRLIGRLDLYMLKRVITILAQ-PENGHWPP--VHVNCSSYSITRPAF 669

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 670 AAEVLAMLAEHNVAPGRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 729

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 730 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 789

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + ++PL    ++
Sbjct: 790 EIGATQAQGYYFSAPLPIEQLV 811


>gi|301384589|ref|ZP_07233007.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059333|ref|ZP_07250874.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302132761|ref|ZP_07258751.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 915

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 218/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 471 VRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGR-QLVVMFIDLD 529

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L+    R+   ++  D+LARL G+ F  +L  +         A
Sbjct: 530 RFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFA-VLSIDTPLQTGTGIA 588

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  I  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 589 QRILTAFEQPFVIDDHTIFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNGGRDSFA 648

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++ LEALI+W  P   
Sbjct: 649 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNTGDLLALEALIRWRMPDGR 708

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+   E L +I  ++L+ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 709 IIAPESFLPALEGLRLIGRLDLYMLKRVITILAQ-PENGHWPP--VHVNCSSYSITRPAF 765

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 766 AAEVLAMLAEHNVAPGRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 825

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 826 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 885

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + ++PL    ++
Sbjct: 886 EIGATQAQGYYFSAPLPIEQLV 907


>gi|260366452|ref|ZP_05778891.1| protein ScrG [Vibrio parahaemolyticus K5030]
 gi|260878498|ref|ZP_05890853.1| protein ScrG [Vibrio parahaemolyticus AN-5034]
 gi|260897079|ref|ZP_05905575.1| protein ScrG [Vibrio parahaemolyticus Peru-466]
 gi|308087694|gb|EFO37389.1| protein ScrG [Vibrio parahaemolyticus Peru-466]
 gi|308091273|gb|EFO40968.1| protein ScrG [Vibrio parahaemolyticus AN-5034]
 gi|308113059|gb|EFO50599.1| protein ScrG [Vibrio parahaemolyticus K5030]
          Length = 568

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 235/560 (41%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNQGFYEQLGINAGRI--NLDRWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+     +D+ +     R+   +R+R  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSKRVDAHINTDNKRVTTTYRLRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  +   +       +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLLLDIEEHV----CSTDTPTSICYIQINEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + + ++  L + +  L      + R+  + F I++  + +   +  +A  
Sbjct: 186 KSYLNQYGNELVNGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILIQDDCSIDTLQAYAET 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + +  + 
Sbjct: 246 IKQTYHEAVVEEGQYLGSNISIGLYPCIDPAHSADEILRKAARTCQYASEQNKDRIAIYS 305

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +         I++ L  A+E   L + + PII     E+V  E+L++W   ++G I  
Sbjct: 306 QRTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIINAKSSEVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I  +   +  +  + I  +R++     + + +N++   L++ E    +
Sbjct: 366 DEFIPVAENKGLIVELGYQVFAKACQFIKQYRERYQNE-VRVNVNVSVLQLMNGEFPSRI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +   +P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEAGVAPQSIVLELTETFILDNNQTAMAPLNTLRELGFALSLDDFGSGYSSLNCFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M       ++ + I         T+MG 
Sbjct: 485 DLPMTQIKIDKSMAWKTLTNHSSREYLKFLIAMCHENNIEVVIEGIEDAKMCDFFTQMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|222080151|ref|YP_002540014.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221738796|gb|ACM39575.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 542

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/520 (23%), Positives = 226/520 (43%), Gaps = 57/520 (10%)

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            I  +L L +  + G   +     H        +   +     R  L  E          
Sbjct: 58  SIEHLLPLKADGLLGSSIDVFHR-HPEHERRILSDPKNLPHNARIDLGPEV--------- 107

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             + +++  +   +   L  +     +T++ ++   I   A  D LTG+ NR +F + + 
Sbjct: 108 --LDLKVSAIMADDDTYLGPMLTWAIVTKEVEAERQIRHLAHYDTLTGLANRVTFNENMD 165

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
           + L L        P ++ ID+D +K +ND  G  VGD                       
Sbjct: 166 SALAL----PGDGPALLFIDLDGFKIVNDTSGHRVGD----------------------- 198

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
               F I++     S  +  FA  + +++++P +    +I + ASIG A       T   
Sbjct: 199 ---EFAILVPHVETSE-LETFASRIIETLSLPYD----QILMGASIGIAIAPIHGDTGES 250

Query: 673 MLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSE-LYLVYHPIIR 729
           +L  A++A+Y AK  G     +F   + S    RV +   L  ++   + +++ Y PII 
Sbjct: 251 LLARADIALYAAKAAGKGTHRTFSENMESRIQKRVRLCAKLRTSLATRQGMFVFYQPIID 310

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
              ++I   EAL++W HP+ G IS +EF+ IAEE  +I  +  F+L     D   W D A
Sbjct: 311 AHTKKITAREALVRWLHPERGWISPAEFVPIAEESGLIDQLGDFVLNTACLDAAGWSDAA 370

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                 + +N+++  L    +   + A ++++  SP R+++  +E+ ++ +       L 
Sbjct: 371 -----RVAVNVSAAQLGKGTIASAILAALTRSGLSPYRLEIEVTETAMLYDEHGVIGDLR 425

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           R+R +G+ + LDDFGT  S L++L   PFD +K +GS +  +    +  AI+R+I  + K
Sbjct: 426 RIRDMGVRVALDDFGTGYSSLTHLRAFPFDKIKIDGSFVKDAVERPESAAIVRAIADLGK 485

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  T +A+ +  E  +  +   GC  +Q      P+   
Sbjct: 486 RLGVTTVAEGVETEAHLIRVLEEGCTEVQGYFYGKPVPSE 525


>gi|193222285|emb|CAL61425.2| conserved hypothetical protein; putative GGDEF, EAL and PAS/PAC
           domains [Herminiimonas arsenicoxydans]
          Length = 937

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 242/572 (42%), Gaps = 12/572 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ QH          +F++ ER  + +    D V   D + +     P    + G +
Sbjct: 353 MVISLQQHESDRELSQAILFAEKERAQVTLESIADAVITTDKLGNIEYMNPVAEALTGWS 412

Query: 442 SGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRI 499
           +    G         ++   R+     ++  +  +    L  +  + + D   + +    
Sbjct: 413 NIEAVGLPSTRVFKILNGYTREPVLNPVELVLQQQSNVELIKDTVLLSRDGIEYAVEDSA 472

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ N  G I+  + + +D+++ +K    +   A  D LTG+ NR+ F  RL   +D  A
Sbjct: 473 APIRNREGLIIGVVLVFHDVSDSRKLAIQLSHQAAHDPLTGLFNRREFERRLELAIDTLA 532

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ +D+D++K +ND  G + GD++L  +T  +  L++  D LARL G+ FG 
Sbjct: 533 RQSKQH-ALLYLDLDQFKIVNDTCGHSAGDELLRQITALLQPLVRDSDTLARLGGDEFGA 591

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            L + +    I       +          ++   +  SIG  ++ ++ ++  ++L  A+ 
Sbjct: 592 FLENCSPESAIRIAEKLRQTICDFHFVWQDKIFPIGVSIGLVNFNTNALSLPDLLSAADT 651

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEE- 734
           A Y AK  G N V  +R    +           E +  A EN   +L+   I+ +  ++ 
Sbjct: 652 ACYVAKDAGRNRVHIYRPEDHQLAVREGEVKWNERIQKAFENDRFHLLAQRIVNIRSDQK 711

Query: 735 -IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD-IISWRDQANMP 792
             +  E  +         I +S F+  AE    +  I+ +++         + R+  +  
Sbjct: 712 DFLFDELTLVMADEFGRLIPTSAFLPAAERYHFMPTIDRWIIRTTFAQHAATIRNARDAH 771

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P  +LI ++S  L D    + +Q            I  + +E+  + N  R+   +G+L+
Sbjct: 772 PHVMLIRVSSNSLDDESFVDFIQEQFVHYALPYQTICFAIAETTAITNLTRALHFIGKLK 831

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            +G  + L DFG+  S  +YL ++  D +K +GS + G        A + +I  ++  + 
Sbjct: 832 PLGCQIALYDFGSGMSSFAYLKHLNVDFLKIDGSYVKGMANDLVDCAKIEAIQNISSVMG 891

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              IA+++  EI + +L ++G  Y Q S ++ 
Sbjct: 892 IETIAQNVEDEITLDKLKKIGIGYAQGSAISH 923


>gi|156346200|ref|XP_001621471.1| hypothetical protein NEMVEDRAFT_v1g221955 [Nematostella vectensis]
 gi|156207438|gb|EDO29371.1| predicted protein [Nematostella vectensis]
          Length = 396

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/396 (25%), Positives = 195/396 (49%), Gaps = 7/396 (1%)

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K +ND LG   GD +L  L  R+  LL+  + LARL G+ F +++        +
Sbjct: 1   MDLDNFKDLNDTLGHDAGDLLLCQLAARLQALLRPDEQLARLGGDEFALLISPCQ-PGLL 59

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GG 689
              A   R ++  P  +    +T+ A+IG A +     ++  +L++AE+AMY  K +   
Sbjct: 60  IPAAEHYRAALHEPFAVRGISMTLNATIGIALYPDHGESAGSLLQHAEVAMYLGKQQRSP 119

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    +      R+ +  +L  AVE  +L L + P + +    + G+E L++W HP  
Sbjct: 120 YALYRPELDRHSLLRLALMSELKGAVEGGQLSLYFQPKLNIRARSLYGVECLVRWIHPVH 179

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I   EF+ +AE+   + A+  +++       ++W++Q         +NI++ DL D  
Sbjct: 180 GFIPPDEFIPLAEQTGNVCALTRWVVRTALAQSLAWQEQRLELKT--AVNISALDLADPG 237

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               + A +++    PS + +  +ES VM +PE +   L +L ++G+ L++DD+GT  S 
Sbjct: 238 FAGFIAAQLAEHGVPPSNLIVEITESAVMADPELAMGQLQQLCELGVQLSIDDYGTGYSS 297

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           ++ L  +P   +K + S +           I+RS I +  N+   I+A+ +  +  ++ L
Sbjct: 298 MAQLKRLPVHELKIDKSFVLDLLSNPDDDIIVRSTIELGHNMGLKIVAEGVETDAILERL 357

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKN 962
            ++ CD  Q   ++ PL   +    L+  ++ L + 
Sbjct: 358 DQLDCDIAQGYLLSKPLPPAAFASWLENCQWQLPRR 393


>gi|328951312|ref|YP_004368647.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451636|gb|AEB12537.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Marinithermus hydrothermalis DSM 14884]
          Length = 690

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 103/438 (23%), Positives = 206/438 (47%), Gaps = 14/438 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +LE +  +A  D LTG+ NR+   ++    L  +    N    ++ +D+D++K++N
Sbjct: 259 ERVAALEALARHAVTDPLTGLLNRRGLEEK-GRALLAALQTRNEPAALIFLDLDRFKEVN 317

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD  L+ +  R+    +  D+ AR+ G+ F ++L    ++      A  ++K+
Sbjct: 318 DTLGHTAGDQALIEVAHRLKATARRTDLTARVGGDEFALLLPG-ADATTAQQVARRLQKA 376

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P+ L  R   + AS+G A +         +++ A++AMY AKH     V        
Sbjct: 377 LEAPVELEGRAFILGASLGVARFPEDAQDLDGLIRAADVAMYAAKHSPAPLVFFNATQDQ 436

Query: 701 RSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++ +L  A+   ++ +   PI+ L   E V  EAL +W       +S + F  
Sbjct: 437 AFREQVRLEHELRQALAAHQIQVHLQPILDLRTGETVLFEALARWK------VSPAVFAP 490

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE     + ++  +L +    + + RD     P  + +N++ +   +  L + ++A + 
Sbjct: 491 LAEAAGFAETLDRQVLAKALAHLKALRDAGF--PGGVTVNLSPQSFANLMLPDWIRAQLM 548

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P R+ L  +E +++   E +   L  L++ G+ L LDDFG+  S LSY+   P D
Sbjct: 549 AHNLPPERLVLEVTERLLLS-GEAALATLQDLKRTGVRLALDDFGSGYSSLSYVHRFPVD 607

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +  +  + +  AIL +I  +++ +  T +A+ I  E +++    +G    Q 
Sbjct: 608 LIKIDKSFVQEAPESPRAHAILEAIARLSEKLGATTLAEGIEREAELEVCRTLGIPLGQG 667

Query: 938 SHVASPLGFNSILKLLKE 955
             +  P+   + L+ L+ 
Sbjct: 668 FLLGKPMPLEAALEWLEA 685


>gi|88799138|ref|ZP_01114718.1| GGDEF domain/EAL domain protein [Reinekea sp. MED297]
 gi|88778121|gb|EAR09316.1| GGDEF domain/EAL domain protein [Reinekea sp. MED297]
          Length = 653

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/647 (19%), Positives = 257/647 (39%), Gaps = 23/647 (3%)

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
            +A       + +    M   +  +      +++    I   +   +   +  +  A   
Sbjct: 21  LVAVGFCAGMFLLGGFWMFATDLGMGSTLFAVVLTFLSITCVLIAVRIYAHIRLHLAQND 80

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
              L   LI    +            +    ++           +W  D     + T   
Sbjct: 81  QKHLQNALIQAKDMLDTSKQLRDDHVLLQSLQQ------NLPFPIWLKDRFGRYLVTNTA 134

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            A        ++    +     ++    + F    +  +  ++ + + E R   ++    
Sbjct: 135 FARDWC---NNVDPKGKTDAELLNPKLVEAFAAADNEALTTKQPQ-KVELRFDFSNQAAQ 190

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W+ I   P+ N   +++  IG A DI+  K  L        +D +T   N+      +  
Sbjct: 191 WVRIERYPLLNEESEVVGLIGFAMDISAYKNELVAESEL-LKDPVTQFMNQSGLSRYMAQ 249

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
                  +       + IDID +K +ND LG   GD++L  ++ RI       ++LAR S
Sbjct: 250 T-----ENPESGLHCIHIDIDHFKVLNDSLGQDSGDELLRQVSERILLATHEGEVLARTS 304

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            + F + L+ + +   I    + + + + +PI L + + + T S G AS      T  ++
Sbjct: 305 ADEFVLFLMDDQD-EPIERRLLDLHEQLNLPITLGDSQYSFTTSFGVASAPEHGHTLEKL 363

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLM 731
            ++A +A+++AK RG N +  +           +  ++ L  A+++ +L +   P I   
Sbjct: 364 KQHAGVALFNAKKRGRNQIHWYHTGYEDQAIRRLNKEQILRNAIQDQDLAIHGQPRIDCR 423

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +I  LE L++        +    F+ +AE+  +I+ ++ +MLE+    I  W  Q  +
Sbjct: 424 TGQIEALECLVRIPLEDGQLMFPGNFIELAEQNGLIRELDAYMLEQALNQISDWLSQ-GI 482

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P+ + IN++ +   +  L + +     +       ++L  +E  +  + E     L  +
Sbjct: 483 EPLPLAINLSLQSF-NTTLLDSLNQWQVRHPEVFQYLELELTEHRLPDHDEAFLEHLKSI 541

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R  GI L LDDFGT  + LS L   PF  +K + S +     ++K+ A+++SII +   +
Sbjct: 542 RDFGIRLALDDFGTGYANLSRLPDWPFQILKLDRSFILDLPESDKQQAVVKSIIDLCSTL 601

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++A+ +  E ++  + ++GC  IQ    A P         L  R
Sbjct: 602 GIQVVAEGVETEAELTIVDQLGCHCIQGYVYARPKPLEDTGDWLSAR 648


>gi|295107012|emb|CBL04555.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 561

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 228/545 (41%), Gaps = 23/545 (4%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D ++  D+  D    + ++     L      G I  W   I   DR +F   +D  +
Sbjct: 24  STDDYLYIIDMKTDMALVSENMQQDFDLPGRVFEGLIPRWRELIADRDRQSFDESIDDML 83

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +      E++VR    ++ W++ R   M +  G  + + G    + E+K  +      
Sbjct: 84  CGKTDEHDLEYQVRNRKGEYIWIMCRGLLMRDGEGSPMLFSGAVTSL-ERKGEV------ 136

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D  TG+      L  L  +L      +     ++++ +D + +IN +   + G+ VL
Sbjct: 137 ---DATTGLFAHGKCLQVLDRLLAR----ERPSGGILLLGLDDFSRINSLNDHSFGNGVL 189

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               + +  LL       R  G+   ++L  E +   + D   A+         +     
Sbjct: 190 RQFAQTLQRLLPENASTFRFDGDEIAVVL-DEADRGAMEDLYRAVHAFANRQQAIDGVPY 248

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--ED 710
             T S G A       T  +++K+AE A+  +KHRG N V  F  +        ++  + 
Sbjct: 249 FCTVSGGIAMVGEDGTTGLDLVKHAESALEESKHRGKNTVSFFSSAMSEEKLRRLELSDR 308

Query: 711 LCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           L  +V +      + Y P++      I G EAL++W   ++G++S +EF+ + E   +I 
Sbjct: 309 LQASVVDGMRGFSVHYQPLVDAGTLGIAGAEALLRWSADEFGSVSPAEFIPVLESYGLIG 368

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++LE+      +W      P   + +NI+   LL+ +    ++ L+++    PSRI
Sbjct: 369 TVGRWVLEQAVGQCAAWDR--IRPDFIMNVNISYLQLLETDFVPFVERLLAQAGVEPSRI 426

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES  + + E  R    +LR IGI L +DDFGT  S L  L   P D VK +   +
Sbjct: 427 VLEMTESYFVTDLEALRATFDQLRAIGIRLAMDDFGTGYSSLGLLSQSPADIVKIDRLFI 486

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +    A + ++I +  +++  +  + +    ++  +  +G D +Q   V+ PL  
Sbjct: 487 KNIHVESFNRAFIDAVIDLCHSVDIEVTVEGVEERTELDTVRAIGADSVQGFLVSRPLPA 546

Query: 947 NSILK 951
               +
Sbjct: 547 GQFEE 551


>gi|269962577|ref|ZP_06176924.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832690|gb|EEZ86802.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 551

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 219/441 (49%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E  K  E    NA  D+LTG+PNR+   +++   +      +    +V++ D+  +K+
Sbjct: 109 INELHKVAEREKHNAVHDSLTGLPNRKFCFEQIDDRI-----QEGAPFSVILFDVVNFKQ 163

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD +L+ + +R+   L   D + R+ G+ F  IL S       ++    + 
Sbjct: 164 INDAMGHFSGDLLLIQIGQRLQTELTGDDEIFRVGGDEFV-ILTSCAEHSAGSNLVGRLD 222

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   NL E +++     G +++     ++  ++K A++AMYHAK  G      +  +
Sbjct: 223 NAMSQRFNLGEFQVSSRVVFGISTFPFDADSNDLLIKCADIAMYHAKRNGQLMAFYNEDM 282

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W      NIS ++F
Sbjct: 283 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDAHTNLAVGFEAVIRWRDGNGKNISPNDF 342

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L+++ RD++S  +Q     + + +N+++KDL  N L   +  +
Sbjct: 343 IPIAERSNQVHNITMWVLDQVERDLLSLIEQGIR--LPVHVNLSAKDLSSNLLFARLDRM 400

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+     + I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 401 LSENPNFANLISLEITETMAIDRVLELNPLINQIKGLGIKISLDDFGTGYSSLSLLRDLP 460

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++ ++  E   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 461 VDQIKIDRSFLSTASKTEGTRSIVENTIALAHGLGYSVVAEGVQDMDTLHFLRSRGCDII 520

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  +   
Sbjct: 521 QGYLFCPALPLNEVISWVNNH 541


>gi|170750828|ref|YP_001757088.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657350|gb|ACB26405.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 657

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/433 (24%), Positives = 191/433 (44%), Gaps = 9/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E     A  D+LTG+PNR+ F  +L   +  S+        + + D+D++K IND  
Sbjct: 212 RLSEENARLAQTDSLTGLPNRRYFFQKLDEAI-RSSAGTETPFALAIFDLDRFKPINDTY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL    RR+        ++ RL G+ FG++L + +++     F   +  ++  
Sbjct: 271 GHNVGDRVLAEAGRRLAGFAGADAVVTRLGGDEFGVLLRAPDSAAAALAFCDGVCTALQQ 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI + +  +    S G A        +  +   A+ A+YH+K +       F      + 
Sbjct: 331 PIQIGDIRVVTGCSGGLALPCRISHDADALFDRADYALYHSKEQRRGATTLFSQEHKDAI 390

Query: 704 R--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    ++  L  A   +E+ L Y P++ L       +E L +W  P  G ++   F+  A
Sbjct: 391 RAEQAVETALRTADLAAEMVLHYQPVLDLETGRTAFVEGLARWTSPTLGRVAPDRFIAAA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   MI  + L +L +   D              +  N+++ DL   E    + A +  +
Sbjct: 451 ERCGMIHTVTLLLLRKALADGARLPPGTG-----LSFNLSAHDLASPETVLAILAAVRGS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P R+ L  +E+ +M + + ++  +  LR +GI + LDDFGT  S L Y+  +P D +
Sbjct: 506 GLDPRRLTLELTETALMRDFDHAKAAITTLRSLGIKIALDDFGTGYSSLGYVHRLPLDKI 565

Query: 882 KFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +   M      R  +++ +I+ + +N+    I + I  +  +    R G  Y Q  H+
Sbjct: 566 KIDRGFMADIDTDRGCSLVSAILDLCRNLGLDGIVEGIETQAQLDVARRHGSRYAQGYHI 625

Query: 941 ASPLGFNSILKLL 953
             P+    +L+ L
Sbjct: 626 GRPMPLGDLLERL 638


>gi|303238430|ref|ZP_07324965.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
 gi|302594134|gb|EFL63847.1| diguanylate cyclase/phosphodiesterase [Acetivibrio cellulolyticus
           CD2]
          Length = 893

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 217/444 (48%), Gaps = 10/444 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KKS E +   A+ D LT +PNR  F++ +   L+ S  D  L   +M ID++++K++N
Sbjct: 445 ELKKSREELKHLAYYDALTDLPNRLYFIEYIKETLE-SNKDKYLILAIMYIDLNRFKQVN 503

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA---M 637
           D LG  VGD +L  + +R   +      +AR+ G+ F +IL + +        +     +
Sbjct: 504 DTLGHEVGDMLLKEVAKRFKSISNNDTFIARIGGDEFVVILKNADKLKAAETASFINKVL 563

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I++  N    ++  + SIG + +         ++KNA+++MY AK  GGN    +  
Sbjct: 564 ADKISVTFNNKGMDLFTSGSIGISLYPLDSNDIHSVIKNADMSMYTAKKEGGNTYRFYEE 623

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                + + + ++  L  A+E  EL L Y P   +    I  +EAL++W+ P+ G I  S
Sbjct: 624 ISKGNKEEEMYLEMKLKGALERRELVLYYQPQFNIKSGGITAIEALLRWNDPELGLILPS 683

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ IA ++ ++  I  ++L      I +WR+   +    + +N++S + L   + + +Q
Sbjct: 684 KFIPIASKIGLMHEIGFWVLTEACTQINTWRNM-GIINTRVTVNMSSDNFLSQYIIDTVQ 742

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  +P  + L  +ES  + N       +  L+++G+ +++DDFG      S L  
Sbjct: 743 KVLDETGVNPELLGLDITESYFLSNFASVEKTVSDLKQLGVYISIDDFGGG-GSFSLLKD 801

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + + +   +  + +  I++++I +  ++    +A+ +    ++  L  M CD
Sbjct: 802 VQVDCIKIDKTFIEKLSTNKKSELIVKAMIDLVHSMGIKAVAEGVETPENVALLKNMNCD 861

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            I    ++ P+  NS  K +    
Sbjct: 862 DIHGFLLSVPMDKNSFEKWVMNYN 885


>gi|332305078|ref|YP_004432929.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172407|gb|AEE21661.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 680

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 201/442 (45%), Gaps = 12/442 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E I   ++ D LT + NR++F   L+ +   +    N    ++ ID+D +KKIND +
Sbjct: 242 KRTEKIAQLSYLDPLTQLMNRKAFTQSLSKLAARAEQS-NSELALLFIDLDGFKKINDTM 300

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL  +TRRI       + + R +G+ F + L   +++      A A+  SI+ 
Sbjct: 301 GHQVGDSVLQEVTRRISAFS-DDNKIGRWTGDEFLVALPY-SDAPTAKAIASAIITSISQ 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
            I++    + + A++G A        ++E+++ A+L M   K         F        
Sbjct: 359 AISVNNNSVHLGATVGIAMCPEHSTEATELIQFADLVMSEQKVTPDRTPVIFSNELQQRV 418

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            D   I E L  A    +LYL Y PI+   D      EAL++W       I   +F+ +A
Sbjct: 419 IDTQTILEGLQQATVRRQLYLCYQPIVSAKDTSSCAFEALLRW-DFDGRFIGPDQFIPLA 477

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +IK +  ++L R   D   W+         + +N++   L+D+     +   +  +
Sbjct: 478 EKSGLIKEMGAWVLNRACMDASQWQYA---HDAAVSVNVSIIQLMDDSFIRALDNALRSS 534

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P R+ L  +ES+ + N  + +  L  ++   + +++DDFGT  S LS L  +  + V
Sbjct: 535 GLAPERLHLEITESIFVDNKIKIKQQLEAIQARKVHVSIDDFGTGYSSLSQLQTLSVNQV 594

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S +        AI+R+ + +A  +    +A+ +        L  MG DY+Q  + A
Sbjct: 595 KIDKSFIDNMHNNGEAIIRATLFIASELNCKTVAEGVETLEQALALKAMGVDYLQGFYFA 654

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            P+    +++    + P+   T
Sbjct: 655 KPMRNEQLIEW---QNPITDTT 673


>gi|222081327|ref|YP_002540690.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221726006|gb|ACM29095.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 714

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 204/436 (46%), Gaps = 19/436 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   E     A  D+L+G+ NR   LD     LD     DN   ++ +ID+D +K +ND
Sbjct: 282 LRALAEAARFEASHDSLSGLLNRHGLLD----ALDHPGNSDNRSMSLYLIDLDGFKAVND 337

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  + + +          ARL G+ F ++ I      ++      +    
Sbjct: 338 AWGHAVGDDLIRIIAKVLPTCHHEIIAAARLGGDEFALVQIGSATPEEVEKA---ILGLF 394

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  L  R I   ASIG A  T S I   E+L+ A++A+Y AK  G  H   +     R
Sbjct: 395 IEPFKLDGRTIEAGASIGSAVGT-SSIAPLELLRRADMALYRAKEDGKGHAVEYDAELDR 453

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    ++ +L  A+ N  +   + P++      I GLEAL +W  P  GNIS   F+ 
Sbjct: 454 DRQRIAELESELRSAINNGTIEPAFQPLVSASTGVITGLEALARWPSPA-GNISPEVFIP 512

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I A+ + ML R      +W        + + +N++   L + +    + A++ 
Sbjct: 513 LAEKSGLIDALGIHMLRRSIAHAKNWN------GLTLSVNVSPIQLCNPDFGAQVIAVLK 566

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
              + P+R+ L  +E V++ NP+++R  + +L+ IGI   LDDFG   + +  L    FD
Sbjct: 567 DFAFDPARLTLEITEGVLITNPDQARRSIDQLKSIGIKFALDDFGCGYASIGALRQFGFD 626

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++G  E      +LR+ I +A  +   + A+ I      + L   GCD +Q 
Sbjct: 627 RMKIDRSLVSGVKEAGNGADVLRATISLATALGIPVTAEGIETAEQAEVLRNAGCDQLQG 686

Query: 938 SHVASPLGFNSILKLL 953
             V  P+  + I + L
Sbjct: 687 YMVGRPVSADEISRKL 702


>gi|113868780|ref|YP_727269.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113527556|emb|CAJ93901.1| predicted signal transduction protein containingPAS, GGDEF and EAL
           domains [Ralstonia eutropha H16]
          Length = 935

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/616 (18%), Positives = 230/616 (37%), Gaps = 33/616 (5%)

Query: 354 LWMAITKRLDNDIIQPALV--GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               +  R  + +   A                  +  +     +   +F++ ER  + +
Sbjct: 315 AEFRLRNRAGDYLWVRARGRLVRGAGRRRARMAGSLTDISDHKRYETQLFAEKERAQVTL 374

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
              GD V   D+     +  P    + G       G   + +  +           L   
Sbjct: 375 QAIGDAVVTADVWGRVESLNPAAEALTGWREADARGLPLSSVCVL------RDEESLAPL 428

Query: 472 VGYRRGRLQYEFRVRAAD----------NQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                  L+  +R R+A            Q   +   +  + +     +  + + +DI++
Sbjct: 429 PDIVTLALRQRWRSRSAQLVQRDVSGLPGQALAVKPSVALIRDRAAQAIGVVVVLHDISQ 488

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++     +   A  D LTG+ NR  F  RL   +  +        T+M +D+D++K +ND
Sbjct: 489 ERAHAARLAYEASHDALTGLVNRAEFERRLDAAITRARVQGTTH-TLMYLDLDQFKVVND 547

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A GD+++  +   +   L+  D LARL G+ FG++L    ++              
Sbjct: 548 TCGHAAGDELIRQMAEVMRSQLRLSDTLARLGGDEFGVLLEQCGHADGERVAEALRHAIA 607

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---- 697
                  +R  T+  SIG  +     +  +E L  A+ A Y AK  G N V+ +      
Sbjct: 608 CFRFAHRQRTFTLGVSIGLVTLDRQTVNVAEALSAADAACYVAKEGGRNRVQVYHPLDSV 667

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI----VGLEALIQWDHPKWGNIS 753
              R   +     +  A+      L    I+   D  +      +E L++    +   + 
Sbjct: 668 VQARHGEMEWVSRVHAALAAGRFCLYSQEIVPAHDGALPQTGRHVELLLRMVDERGRLVP 727

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+   E   ++  I+ +++E     +   + +         IN++   L D +  + 
Sbjct: 728 PMAFVPACERYNLMPMIDRWVVETAFGTLAGRQAEIA----TCAINLSGSSLADLQFPDF 783

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++    +   +   I    +E+  + N  ++   + +L+++G    LDDFG   S  +YL
Sbjct: 784 VREQAQRFGIALDGICFEITETAAISNLAQAGAFILQLQQLGCKFALDDFGAGMSSFTYL 843

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            ++P   +K +GS +         + ++  I  +   +    IA+ + GE  ++ L  +G
Sbjct: 844 KHLPAAYLKIDGSFVRDMLADPVNLVMVEVIQRIGHAMGKQTIAEFVEGEAMLERLRELG 903

Query: 932 CDYIQDSHVASPLGFN 947
            D +Q  H+ASP+ F 
Sbjct: 904 VDLVQGYHIASPVPFA 919



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 4/173 (2%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHV---LATGYFSQGIFSDGERQSLAVLGSG 415
             +    + +    G  V+   L+   ++  V          + +    E+  LAV GS 
Sbjct: 191 LGQASRRVTRLLTTGSAVMAAALLMSAILLSVAPLRRERRLREALAQREEQLQLAVEGSN 250

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D +WDW + R  +  +P  A +LG     +       L  +H ++   F   L   +   
Sbjct: 251 DGLWDWHLGRGELYFSPRCAQMLGYQDAELPHARETVLGLLHPSELAAFEAKLAHHLR-S 309

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 EFR+R     + W+  R R +  +     R  G   DI++ K+    
Sbjct: 310 GDPYDAEFRLRNRAGDYLWVRARGRLVRGAGRRRARMAGSLTDISDHKRYETQ 362


>gi|307946582|ref|ZP_07661917.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307770246|gb|EFO29472.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 685

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 209/439 (47%), Gaps = 11/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++        A  D LTG+PNR+ F   L T    +     +   + + D+  +K +N
Sbjct: 241 ETQRLAGENEKLANHDPLTGLPNRRLFFSTLQTSCVKANKAGTV-YGLCIFDLGGFKALN 299

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD++LV + +R+ E     + ++RL G+ F  ++ ++ N+ ++      + + 
Sbjct: 300 DLFGHVAGDNLLVQVAKRLKEKA-GGEFISRLGGDEFCYVVDNDANAREVELKCRQIMEI 358

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
              P  +    ++++   G A     + T  E+ +NA  A+  AK     G  +      
Sbjct: 359 FKAPFLVPGGGVSLSGYAGVAVLAGPEETHVELYENAAFALKVAKRKPEHGFVLFGDPQR 418

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + ++  L  A    E+ L Y PII +    + G E L +WD+P+ G I  S F+
Sbjct: 419 QEMEQTIRLERTLLNANLAKEMTLEYQPIIDIHSYNVRGFEGLARWDNPELGRIPPSSFI 478

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    I  +  ++++R  +D  +W D      + +  N++  +L   +L   +  ++
Sbjct: 479 PVAEHSGYINQLTGYLMQRALKDARNWPD-----DVSLSFNLSPTNLSSKDLVSQLLQIV 533

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++ + P+R++   +E+ VM + +++ L + +L++ G  ++LDDFGT  S L ++  +P 
Sbjct: 534 FQSGFDPNRLEFEITETAVMWDFDQALLAVQQLKEKGARISLDDFGTGYSSLKFIHELPL 593

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      +    I++S++ ++ ++    + + +    +++ + ++G + +Q
Sbjct: 594 DKIKVDRSFVRDINTDQTRHGIVKSLLTLSHDMNIDCVIEGVETNAELEIIRKIGGELVQ 653

Query: 937 DSHVASPLGFNSILKLLKE 955
              +  P+  + I   LK 
Sbjct: 654 GYLLGKPMKPSDIPSCLKS 672


>gi|119776105|ref|YP_928845.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768605|gb|ABM01176.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 734

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/586 (19%), Positives = 237/586 (40%), Gaps = 28/586 (4%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
             +  + I  T+I  V+     +Q +     R               D            
Sbjct: 151 AFMDELGIAATLICAVMELTRIAQALTVSERRYQELFNQLPLACGLVDRRNRVKLLNSIA 210

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
              L ++ G       + L  +   +    +  L         +   E  ++       W
Sbjct: 211 RQNLPVSDGQ------DLLALVRPEEEAMLQDTLQVVRDGVLSQAWCEISMKGPLLNQQW 264

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + +    MS+  G +L     A D++E+ +  + +  +A  D LTG+PNR  F   L  +
Sbjct: 265 IKLSFSTMSDDPGTLLML---AEDVSERHRLADELSFHANYDALTGLPNRSHFEAVLDKL 321

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     +      V  +D+D+++ IN+V G   GD +L  +  R+ +L++  D +ARL G
Sbjct: 322 LQQIPEEP---ICVAFLDLDQFQVINNVSGHQAGDKLLCQVALRLKQLVRKGDTVARLGG 378

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I++   N             +          R   V+ S+G A   +       ++
Sbjct: 379 DEFAILMHYCNEDTAKVIAQRICTQLFEHEFYWEHRRHNVSVSMGVAPLDAGVNDIYVLM 438

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRL 730
             A+ A   AK +G N    +  +  + +R+  +     D+  A+  ++  L Y  I  L
Sbjct: 439 SRADAACRLAKEQGRNGWHIYCATDPKMNRLYSEMTASVDIIDALSQNQFQLYYQLIEPL 498

Query: 731 MDEEI-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR----DIISW 785
           ++E+  + +E L++   P    +S   F+  AE   +   ++ ++++ + R     +  W
Sbjct: 499 LNEQAGIHMEILLRLQRPDGKMLSPGLFLPAAERYNLASRVDRWVIDNLLRWGGNHLALW 558

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           ++        + +N+++  L D E  E ++  +       S++    +E+  +   E+++
Sbjct: 559 QELD-----MVSVNLSANSLSDQEFMEWLEIRLMAEPELVSKLCFEITETAAVSQLEQAQ 613

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            L+  LR +G  L LDDFG+  S  +YL  +  D VK +G  +      +   AI+ +I 
Sbjct: 614 ALIELLRPLGCKLALDDFGSGFSSFAYLKLLDVDFVKIDGQFVVNLCDNKSDQAIVNAIC 673

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            + ++++  +IA+ +  E     L  +  DY Q   +  P   +++
Sbjct: 674 QLGRDMDFDVIAEFVESEAVGLRLRELEVDYAQGYAIGKPEPLDNL 719


>gi|332525659|ref|ZP_08401810.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109220|gb|EGJ10143.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
           JA2]
          Length = 689

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/454 (24%), Positives = 204/454 (44%), Gaps = 22/454 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  +       A  D +TG+PNR+ F +     L+ +         V+   ID++  + D
Sbjct: 226 RAAAELRAQLLAHYDEITGLPNRRLFGELAVAALERARRT-GTGCAVLHAQIDRFGSVTD 284

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLK 629
           V G   GD VL  + +R+   ++  D+            +ARL  N F +++   ++  +
Sbjct: 285 VYGRGQGDAVLNVVAQRVRTTIRGGDLAAVGTAGDESGVVARLGDNAFSVLVTDLDSQQR 344

Query: 630 IADFAIAMRKSIAMPINLLE----REITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            +  A  ++  I   I +      + + ++AS+G A +       + +++ AELA   A+
Sbjct: 345 ASAVAQRLQAVIGQAIEVDGAPPAQPLLLSASVGIAMFPGDAQDVAGLMRCAELAARAAR 404

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             GG     F        R    ++ +L  A+E  +  L Y P + +    IVG EAL++
Sbjct: 405 AAGGAQHAFFDAELNARSRARALLEAELRQALEAGQFVLHYQPKVDVRSGRIVGAEALVR 464

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +    F+ +AEE+ +I A+   +L+     +  W D     P+ + +N+ + 
Sbjct: 465 WQHPGRGLVEPGRFIPLAEEIGLILALTEQVLQAACSSLRRWADAGRR-PLPLSVNLPAS 523

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L D  L   +  L+     +PS + L  +E+++M + + +  +LG L+  G  L+LDDF
Sbjct: 524 SLADRRLPGRLGELMRAHGLAPSSLVLELTETMLMHDVDAAIEVLGELKARGFGLSLDDF 583

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LS+L  +P   +K + + +T   +     A+  +II + K +   ++A+ +   
Sbjct: 584 GTGYSSLSHLKRLPMSELKIDRAFVTDVAQGGPDAALAVAIITLGKELGLQVVAEGVETP 643

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                L   GC   Q    + PL      +LL E
Sbjct: 644 AQSAFLKARGCTLQQGYLFSRPLPREDFERLLDE 677


>gi|134094477|ref|YP_001099552.1| putative signal peptide [Herminiimonas arsenicoxydans]
          Length = 891

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 242/572 (42%), Gaps = 12/572 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +  ++ QH          +F++ ER  + +    D V   D + +     P    + G +
Sbjct: 307 MVISLQQHESDRELSQAILFAEKERAQVTLESIADAVITTDKLGNIEYMNPVAEALTGWS 366

Query: 442 SGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRI 499
           +    G         ++   R+     ++  +  +    L  +  + + D   + +    
Sbjct: 367 NIEAVGLPSTRVFKILNGYTREPVLNPVELVLQQQSNVELIKDTVLLSRDGIEYAVEDSA 426

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ N  G I+  + + +D+++ +K    +   A  D LTG+ NR+ F  RL   +D  A
Sbjct: 427 APIRNREGLIIGVVLVFHDVSDSRKLAIQLSHQAAHDPLTGLFNRREFERRLELAIDTLA 486

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   ++ +D+D++K +ND  G + GD++L  +T  +  L++  D LARL G+ FG 
Sbjct: 487 RQSKQH-ALLYLDLDQFKIVNDTCGHSAGDELLRQITALLQPLVRDSDTLARLGGDEFGA 545

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            L + +    I       +          ++   +  SIG  ++ ++ ++  ++L  A+ 
Sbjct: 546 FLENCSPESAIRIAEKLRQTICDFHFVWQDKIFPIGVSIGLVNFNTNALSLPDLLSAADT 605

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEE- 734
           A Y AK  G N V  +R    +           E +  A EN   +L+   I+ +  ++ 
Sbjct: 606 ACYVAKDAGRNRVHIYRPEDHQLAVREGEVKWNERIQKAFENDRFHLLAQRIVNIRSDQK 665

Query: 735 -IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD-IISWRDQANMP 792
             +  E  +         I +S F+  AE    +  I+ +++         + R+  +  
Sbjct: 666 DFLFDELTLVMADEFGRLIPTSAFLPAAERYHFMPTIDRWIIRTTFAQHAATIRNARDAH 725

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P  +LI ++S  L D    + +Q            I  + +E+  + N  R+   +G+L+
Sbjct: 726 PHVMLIRVSSNSLDDESFVDFIQEQFVHYALPYQTICFAIAETTAITNLTRALHFIGKLK 785

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            +G  + L DFG+  S  +YL ++  D +K +GS + G        A + +I  ++  + 
Sbjct: 786 PLGCQIALYDFGSGMSSFAYLKHLNVDFLKIDGSYVKGMANDLVDCAKIEAIQNISSVMG 845

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              IA+++  EI + +L ++G  Y Q S ++ 
Sbjct: 846 IETIAQNVEDEITLDKLKKIGIGYAQGSAISH 877


>gi|327192972|gb|EGE59887.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 510

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 209/448 (46%), Gaps = 15/448 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD----NLRPTVMVIDIDKYKKI 579
            +       A  D+LT +PNR +F  ++      S   +    +   T+  +D+D +KK+
Sbjct: 69  AAQAKADWTATHDHLTKLPNRYAFERKILARPVKSNEAEIEEWDHNVTIFSVDLDGFKKV 128

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND++G   GD +L+ + RRI  L    D + R  G+ F I+  +   + +   FA  + +
Sbjct: 129 NDLVGHKGGDVLLIEVARRICALGNA-DCVYRFGGDEFIIVAFALT-AQREERFAKLLIQ 186

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  PI++    + V AS+G+  W             A+LAMY AK RG NH   F  S 
Sbjct: 187 AVTRPIHIDGFAVEVGASVGYDRWAEGTEPLENAAHRADLAMYEAKSRGPNHYLVFESSM 246

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +R  ++  L  A+ N ++   Y P+I L   ++ G EAL +W      +I    F
Sbjct: 247 QDKVAERASLETRLRAAIANKDIKPFYQPLIDLKTGQLCGFEALARWTGEDGIHIPPPVF 306

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE  MI A+   +L +   D ++W        + +  N++   + D  L   +  +
Sbjct: 307 IDIAEETGMITALFEDLLTQACSDALTWPAH-----VMLSFNVSPVQMEDKLLTSRILKV 361

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S +   P R+++  +E+ ++ +P  + ++L  L   GI + LDDFGT  S L+ L    
Sbjct: 362 LSASRLPPQRLEVEITENALIQDPAIAAVILDELHAAGIQIALDDFGTGYSSLAQLARYR 421

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +      E++  I+R+++ + +++     A+ I     +  L ++GCD  
Sbjct: 422 FDKIKIDKSFIATYRDDERQEKIVRAMLGLGRSLNIKTTAEGIEEHGQLAFLLQLGCDIG 481

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q       +        +++R   + +T
Sbjct: 482 QGYLFGKAMPAAEAGIFIRDRDANLAST 509


>gi|330968339|gb|EGH68599.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 702

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 218/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 258 VRDRTRELDQANARLQHENSHDSLTGLPNRSQLQHRLRQAWQDFCRNGR-QLVVMFIDLD 316

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +L+    R+   ++  D+LARL G+ F  +L  +         A
Sbjct: 317 RFKMINDSLGHHCGDILLIQAAERLRSCMREEDLLARLGGDEFA-VLSIDTPLQTGTGIA 375

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 376 QRILTAFEQPFVIDDHTVFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNGGRDSFA 435

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++ LEALI+W  P   
Sbjct: 436 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNTGDLLALEALIRWRMPDGR 495

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+   F+   E L +I  ++L+ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 496 IIAPESFLPALEGLRLIGRLDLYMLKRVITILAQ-PENGHWPP--VHVNCSSYSITRPAF 552

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 553 AAEVLAMLAEHNVAPGRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 612

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 613 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 672

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + ++PL    ++
Sbjct: 673 EIGATQAQGYYFSAPLPIEQLV 694


>gi|188581586|ref|YP_001925031.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
 gi|179345084|gb|ACB80496.1| diguanylate cyclase/phosphodiesterase [Methylobacterium populi
           BJ001]
          Length = 635

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/429 (26%), Positives = 201/429 (46%), Gaps = 17/429 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E     AF D LT +PNR++F   +      +         V +ID+D +K +ND  G
Sbjct: 204 LSEENRRLAFTDYLTDLPNRRAFFAEIE---RRARRRSGEPFHVGLIDLDGFKPVNDSFG 260

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD VL  +  R+    K    + RL G+ FG+I+    +   +A     +   +A P
Sbjct: 261 HRAGDAVLREVAHRLKA--KEIGWIGRLGGDEFGLIVEGGAD---LAQIGRRICGGLARP 315

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
             L E    + ASIGFA +  +  +   +L+ A+ A+YHAK   RG     +        
Sbjct: 316 FPLREGTAQIGASIGFARYPDAATSPEMLLERADFALYHAKIHQRGTAVSFAPEHEERLR 375

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           D  MI++ L  A   +E  L Y PII  +D  I   EAL +W+ P  G +S +EF+L+AE
Sbjct: 376 DIAMIEQALRRADLAAEFDLHYQPIIDTVDHRIEAYEALARWNSPVIGRVSPAEFILVAE 435

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I+ +   +  +    + +W +      + +  N++++D+        +  L+  + 
Sbjct: 436 QTGLIRDLTPILFGKALAALRTWPE-----DVRLSFNLSAQDIASPASVARLAELVVASG 490

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P RI    +E+ +M +   +   L  L+++GI + LDDFGT  S  SY+  +P D +K
Sbjct: 491 LDPGRIVFEVTETGLMRDLVEAHCSLATLKELGIGIALDDFGTGYSSFSYVHRLPLDRLK 550

Query: 883 FNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +   G     ++I+RSI+ M++N+    + + +     +  L   GC  +Q    
Sbjct: 551 IDRSFVISLGDDATSLSIIRSIVDMSRNLGLHCVVEGVETFDQMLLLRSAGCRSMQGYLF 610

Query: 941 ASPLGFNSI 949
           + P+   ++
Sbjct: 611 SKPMPEEAV 619


>gi|109897373|ref|YP_660628.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109699654|gb|ABG39574.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 666

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 211/438 (48%), Gaps = 10/438 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+ +K    I   +  D LTG+ NR +FL+ L   L       +    ++ ID+D +KKI
Sbjct: 222 TQVEKRTRKIYELSNLDPLTGLFNRTAFLNHLKLSLQECVE-QHQPMALLFIDLDGFKKI 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +L     R+ E  K   +L R  G+ F I L +   +  +A  + A+  
Sbjct: 281 NDTIGHDAGDQILTQTALRLKEHCKDHQLLCRWGGDEFLIALPNTQQASAVAQ-SKALID 339

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I+        ++++ A+IG + +        ++++ A++AMY+ K R  +    F    
Sbjct: 340 YISEAYTYDNAQLSLGATIGISLYPQHASDELKLIQLADMAMYYQKKRAISTSGVFSKEL 399

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    +K+ L  A+EN EL + + PI+   + EI   EAL++W      +IS  EF
Sbjct: 400 GSKLTREQFLKDGLARAIENKELSVSFQPIMASDNSEICAFEALLRWQKED-EHISPVEF 458

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+   I+ I  ++L +      SW       PI + +N++   L  ++    ++  
Sbjct: 459 IPIAEQHGFIRKIGTWVLNKACFVAASWPK-----PIAVSVNVSVSQLQSDDFITIVEEA 513

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +  + + + L  +ESV   + +     +  L+  GI +++DDFGT+ S LS +  + 
Sbjct: 514 LLTSGLAANLLHLEITESVFSFDKDIMISRIKILQSRGIKVSIDDFGTEYSSLSVMQDLA 573

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +TVK + S +       +AI++++I +A   +  ++A+ +  +     L ++G  + Q 
Sbjct: 574 VNTVKIDRSFVNRLDSSGLAIVQAVINIAHAFDYLVVAEGVETKEQALALQKLGVHFSQG 633

Query: 938 SHVASPLGFNSILKLLKE 955
            + + P+  + +L+ +K+
Sbjct: 634 FYFSKPIPEHKVLQFIKK 651


>gi|154248006|ref|YP_001418964.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
 gi|154162091|gb|ABS69307.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
          Length = 733

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/441 (23%), Positives = 215/441 (48%), Gaps = 14/441 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +   S       A +D LTG+ NR +F++ L   +  +   +     ++ +D+D +K IN
Sbjct: 279 DLVASEAKARELAARDYLTGLLNRGAFIEALDAAI--ARRRNGETLALLFVDLDDFKVIN 336

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GDD+L +  RR  E L    ++AR  G+ F  ++   N++  +      + + 
Sbjct: 337 DSAGHAAGDDLLRAFARRTEEALGEGSVVARFGGDEFVAMVPCRNDAD-LDHAVERLFRE 395

Query: 641 IAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--V 697
           +A P+ L    +++++A +G A       T +E+++ A++A+Y AK  G      F    
Sbjct: 396 LAPPVLLEQGGDLSLSACVGAARLPRDAATGAELMRLADVALYRAKADGTGLYRRFEPGF 455

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            + R +   I+ +L  A++  E+ LVY P + +  E +VG EAL +WDHP  G +    F
Sbjct: 456 DAERIEHRRIETELAAALDKREITLVYQPQVDVESERVVGFEALARWDHPTQGRLLPGAF 515

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   ++   + ++L     +  +  +      + + +N+++ +L    +   +   
Sbjct: 516 LAVAETSRLMGRFDAYVLRMALMEARALPE------VTLSVNMSALNLRQGAIFGMVVTA 569

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++T ++P+R+++  +ES ++      +  L +LR +G+ + LDDFGT  + L +L   P
Sbjct: 570 LAETGFNPARLEIEITESAILDAASDGQEALQKLRDMGVRIALDDFGTGHASLVHLRRFP 629

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +      R   AI+  +I + +++  T+ A+ +     ++ L   G    
Sbjct: 630 ITKIKIDKSFILDMATDRDASAIVEYVIRLGRSLGITLTAEGVETREQLRFLRAFGAQQA 689

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A PL   + + +L+ +
Sbjct: 690 QGYLFAPPLPLAAAIAMLERQ 710


>gi|332307711|ref|YP_004435562.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175040|gb|AEE24294.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 665

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/434 (24%), Positives = 209/434 (48%), Gaps = 10/434 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    I   +  D LTG+ NR +FL+ +   L+   T  +    ++ ID+D +KKIND +
Sbjct: 226 KRTRKIYELSNLDPLTGLYNRTAFLNHVKLTLEHCVT-QHQPMALLFIDLDGFKKINDTI 284

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L    +R+ E      +L R  G+ F I L +   +  +   A  + + I+ 
Sbjct: 285 GHDAGDQILTQTAQRLKEHCLDQQLLCRWGGDEFLIALPNTQQASAVTQ-AKNLIEHISQ 343

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                  ++++ A+IG + +        ++++ A++AMY+ K R  +    F        
Sbjct: 344 AYLFENTQLSLGATIGISLYPQHADNELQLIQLADMAMYYQKKRAISTSGVFSKELGDKL 403

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +K+ L  A+EN EL L + PI+   + EI   EAL++W   +  +IS +EF+ IA
Sbjct: 404 VREQYLKDGLARAIENKELSLSFQPIMASDNSEICAFEALLRWQ-KEQEHISPAEFIPIA 462

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I+ I  ++L +      SW       PI + +N++   L   +    ++  +  +
Sbjct: 463 EQHGLIRKIGTWVLNKACFVAASWPK-----PIAVSVNVSVSQLQSEDFITIVEEALLTS 517

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + + L  +ESV   + +     +  L+  GI +++DDFGT+ S LS +  +  +TV
Sbjct: 518 GLPANLLHLEITESVFSFDKDIMIARIKILQSRGIKVSIDDFGTEYSSLSVMQDLAVNTV 577

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K + S ++      +AI+++++ +A   +  ++A+ +  +     L  +G  + Q  + +
Sbjct: 578 KIDRSFVSRLDSSGLAIVQAVVNIAHAFDYLVVAERVETKEQAIILQNLGVHFSQGFYFS 637

Query: 942 SPLGFNSILKLLKE 955
            P+   ++L+ +K 
Sbjct: 638 KPIPEKNVLQFIKN 651


>gi|111022736|ref|YP_705708.1| hypothetical protein RHA1_ro05772 [Rhodococcus jostii RHA1]
 gi|110822266|gb|ABG97550.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 1324

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 212/436 (48%), Gaps = 11/436 (2%)

Query: 530  LCNAFQDNLTGIPNRQSFL-----DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               A  D+LT + NR++       +    +   +       P V+++D+D++ +IND  G
Sbjct: 890  HREARTDDLTNLANRRAITAALAAEYFDHVAQPAGQPRRPGPGVLLMDLDRFNEINDSFG 949

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              VGD +L  +  R+   ++  D+ AR+ G+ F ++L S  +  +    A  + + +  P
Sbjct: 950  RYVGDQLLRQVADRLARSVRPGDLPARIGGDAFAVLLPSGIDLAEACALADRLLEVLREP 1009

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSD 703
             +L E  + V ASIG A          ++L+ A +AMY AK       V     +    +
Sbjct: 1010 FDLDEVTVHVEASIGIALCPQHCANPQDLLQRAGVAMYRAKCDRRALEVYDAAENQRSME 1069

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                 ++L  A+   +L   Y P +   D  + G+EAL++W+HP  G +   +F+  AE+
Sbjct: 1070 ERQTIDELRTAIAGGQLTCYYQPKVSTCDGRVHGVEALVRWEHPLRGLLLPDQFLPQAEQ 1129

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +++ +   +LE       SW D+     + + +N++  +LLD +L   +  L+     
Sbjct: 1130 SGLMRPLTARVLELALGQARSWLDRG--ISLTVAVNLSVTNLLDADLVAEIDRLLDDLRL 1187

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                + L  +ESV+M +  R+R ++  L+ +GI L++DD+GT  S L+YL  +  D +K 
Sbjct: 1188 PADTLILEITESVLMTDYRRARRVVEALQGLGIGLSIDDYGTGWSSLAYLQDLAVDELKL 1247

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +       + +AI+RS + +A ++  +++A+ +  E  +K L R GCD  Q  +  
Sbjct: 1248 DRIFVARLASDPRSVAIVRSTVELAHSLGASLVAEGVEDEDTLKALRRYGCDVTQGHYHG 1307

Query: 942  SPLGFNSI-LKLLKER 956
             PL  + + L+LL   
Sbjct: 1308 RPLPPDQLDLRLLGRH 1323



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 5/181 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ L  +   AF+D LTG+ NR  FLDRL   L      +     V+ +D+D +K +N
Sbjct: 333 ENRRLLLTVARQAFRDRLTGLANRALFLDRLDQALQR-QRRELTPIVVLCVDLDDFKTVN 391

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++L+ +  R+   ++  D +ARL G+ F  ++    +       A  + ++
Sbjct: 392 DSLGHPAGDELLIRVAERLTGCVRSTDTVARLGGDEFAALVEG--SVEDALSAADRVLEA 449

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVS 698
              P  +    +++  SIG    TS    +    +LK A+LAMY AK  GG  + SF  +
Sbjct: 450 FIPPFVIDGVALSIRPSIGLTIATSEVPDATTESLLKQADLAMYVAKRCGGGCLRSFMPN 509

Query: 699 S 699
            
Sbjct: 510 P 510


>gi|91223820|ref|ZP_01259084.1| hypothetical protein V12G01_18787 [Vibrio alginolyticus 12G01]
 gi|91191312|gb|EAS77577.1| hypothetical protein V12G01_18787 [Vibrio alginolyticus 12G01]
          Length = 567

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 240/560 (42%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNKGFYEQLGINAGRI--SLEQWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+   T +D+ +     R+   +RVR  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSTRVDAHIITNNTRVTTTYRVRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  L   ++ S    +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLL--LD--IEDSVRATDSCASICYIQIEEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + D ++  L + +  L      + R+  + F I++  E +   +  +A +
Sbjct: 186 KSYLNQYGSELVDGLVEKLLQTLSHLPSPNSSVYRVHDDDFAILIHDECSVETLQSYAES 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + V  + 
Sbjct: 246 LKETYHEAVIEEGQYLGSNISIGLYPCIDPSHSAEEILRKAARTCQYASEQNKDRVAVYS 305

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +          I++ L  A+E   L + + PII     ++V  E+L++W   ++G I  
Sbjct: 306 EKTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIIDAKSSKVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I  +   +  +    I ++R++     + + +N++   L+++E    +
Sbjct: 366 DEFIPVAENKGLIVELGYQVFAKACEFIKNYRERYQNQ-VRVNVNVSVLQLMNSEFPARI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +    P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEVGVDPESIVLELTETFILDNNQTAIAPLNTLRELGFALSLDDFGSGYSSLNSFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M +     ++ + I      +  T MG 
Sbjct: 485 DLPMTQIKIDRSMAWKTLTNRSSQEYLKFLITMCQENNIEVVIEGIEDAKMCEFFTEMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|119962652|ref|YP_946434.1| GGDEF domain/EAL domain-containing protein [Arthrobacter aurescens
           TC1]
 gi|119949511|gb|ABM08422.1| putative GGDEF domain/EAL domain protein [Arthrobacter aurescens
           TC1]
          Length = 472

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 201/441 (45%), Gaps = 9/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  ++      +A  D LTG+ NRQ+ ++        +A    + P ++++++D +K + 
Sbjct: 29  ELHQARYEQRRDALTDALTGLGNRQALVNSFIEA-QDAAAKGAVPPALLLVNLDGFKALK 87

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A  D +LV++  RI   ++  D++ RL G+ F ++L       +       +  +
Sbjct: 88  NSAGHAASDQILVTVAMRIRSAVRENDVVTRLGGDEFAVLLP-ATPQNRATAVGNRILAA 146

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +   I+L    I   AS+G  +      +  ++L+ A+LAM  +K+ G N ++ F  +  
Sbjct: 147 LEPNIDLGNNSIRCGASVGLRTAEPHH-SIEDILQEADLAMEDSKNEGRNKLKVFDPATL 205

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +  +  I  +L  A+   +L L Y PI+ L    I G EAL++W+HP  G I   +F+
Sbjct: 206 HAQLLQRQIVGELREAIRADQLVLYYQPIVELSTGRIEGCEALVRWNHPVHGLIMPDQFI 265

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQ--ANMPPIFILINIASKDLLDNELCEGMQA 816
            IAE   +I  +  ++L    R +  WRD          + IN ++ DL   E  + + A
Sbjct: 266 PIAEATGLIAELGRWVLRTAVRQLRRWRDHPVTAQQDFSMRINASAADLQSLEFVDAVSA 325

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +++   +P  + L  +ES ++ N E  R  L  L ++G+ L +DDFG   S + YL  +
Sbjct: 326 ALAEEHLAPDSLVLELTESAIIQNNELDRYTLASLHRLGVGLEIDDFGAGYSSMGYLRKL 385

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D VK +   +        ++  L +I  +  +     + + I      + L  +GC  
Sbjct: 386 PVDRVKVDRQFVKDLGKDPSQLGFLAAIQHVIHSCGLEGVWEGIETAEQAEALRSIGCAS 445

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q  +   PL      + L  
Sbjct: 446 GQGYYFGRPLPEAEFTEQLSR 466


>gi|257061219|ref|YP_003139107.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|256591385|gb|ACV02272.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 617

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 209/424 (49%), Gaps = 4/424 (0%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           ++ D LT +PN+    + L+  L  +  + NL   +++IDI  +KKIND +  ++GD +L
Sbjct: 183 SYTDPLTDLPNQILVNEYLSIALTNAKRNKNL-VGLILIDIKDFKKINDNVSYSIGDQIL 241

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + +R+ + L+  DI+ R  G++F I+L        +      + K +  P+ + ++  
Sbjct: 242 QQIAKRLKDYLRSGDIVGRWGGDQFSILLTQVKTIENVEKVIKRLIKILQEPLPIDKQIY 301

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           T+   +G A +      S  ++   E  +  AK  G         +   S  +  ++ L 
Sbjct: 302 TLDYYLGLAIYPQDGDGSQRLIGYVERQIADAKKSGNCITLKEASAEINSQLLQFQKRLK 361

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + EL L Y P + ++  +I G+EALI+W HPK G +   +F+  AE+  ++  +  
Sbjct: 362 QALIHQELSLYYQPQVNIITGQIEGVEALIRWHHPKQGLLLPQKFLSWAEKTDLLIPLTR 421

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE       +W++    P I + +N++++     +L + ++ ++  T      ++L  
Sbjct: 422 WILETACTQNKAWQNDGL-PSILMSVNLSTEQFYHPQLIKLIKQVLLATGLKSRWLELEI 480

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E+ ++ + +++  +L  L+ +G+SL LDDFG     +SYL   PF  +K + S++    
Sbjct: 481 TETTILKDSQKAYRILKALQHLGVSLCLDDFGKGYGAISYLSESPFQKLKIDLSVIQKLK 540

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   ++ ++I +A+  +   +A+ +  +  +  L  + CD IQ    + PL      
Sbjct: 541 ENPENTMMISALITLAEKFQMRAVAEGVETQQQLDVLYTLQCDAIQGYRFSRPLPVEEAT 600

Query: 951 KLLK 954
           + L+
Sbjct: 601 EFLQ 604


>gi|229588623|ref|YP_002870742.1| putative signal transduction GGDEF domain-containing membrane
           protein [Pseudomonas fluorescens SBW25]
 gi|229360489|emb|CAY47346.1| putative signal transduction GGDEF domain membrane protein
           [Pseudomonas fluorescens SBW25]
          Length = 782

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/464 (24%), Positives = 218/464 (46%), Gaps = 17/464 (3%)

Query: 504 NSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +  G +   +  + + I E+    + +  NA  D LTG+PNR   ++RL + + L     
Sbjct: 328 DELGRLALAVNAMQSGIAER---EQQLAHNALHDRLTGLPNRALAMERLGSAIALQR--- 381

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ + ID  +  ++ +G    D +L+++++R+   L+  D LA L  + F ++L 
Sbjct: 382 --PMALIYLGIDNLRVASEAIGPQAVDQLLLTVSQRLQAALRPGDTLAHLIADEFLLLLE 439

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +  +    A  +++ +  P  +   ++ +   +G A++ +       +L+ A +AM 
Sbjct: 440 GAGS-DEAVGMADKLQQLLLRPQRINGHDLALDCRLGIAAYPADGANPITLLERAAIAMK 498

Query: 683 HAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            A    G   V           ++ +  DL  A    +L L Y P + +    +   EAL
Sbjct: 499 DAAQMPGRLQVYEQGRDLVHRRQITLIRDLRHAPNLGQLLLHYQPKLDIRQGHVRQAEAL 558

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP++G +S +EF+ +AE    I  +  +++E   R +  W        + + +NI+
Sbjct: 559 LRWQHPQFGMVSPAEFIPLAERSGSITLLTQWVIEEGIRQLCEWN--GRGLSLQLSLNIS 616

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DLL +EL   + AL+ +      ++    +ES VM  PE++  +L  LR  GI L++D
Sbjct: 617 ADDLLGDELAHRVSALLRRYGLPAEQLLFEITESAVMREPEKALKVLNLLRDCGIGLSVD 676

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L++L  +P   +K + S +    E  +   I+RS I M+ N+   ++A+ + 
Sbjct: 677 DFGTGYSSLAHLKRLPVQELKIDQSFVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVE 736

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
               ++ L R  CD  Q   ++ PL  ++    +    PL   T
Sbjct: 737 YAHSLRLLERWQCDTAQGYLISRPLSADAFEAWVA--LPLSAQT 778


>gi|332560712|ref|ZP_08415030.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides WS8N]
 gi|332274510|gb|EGJ19826.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides WS8N]
          Length = 733

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 199/447 (44%), Gaps = 13/447 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +S E     A  D L GIPNR  F DRL   L  +         ++ +D+D++K +ND
Sbjct: 295 LHQSEEEARYLAMHDPLAGIPNRTLFEDRLDQALK-AERRGGPPVALLCLDLDRFKAVND 353

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD+++  +  R+   ++  D +ARL G+ FG+ILI   +   +  +   +   +
Sbjct: 354 TMGHQAGDELIRQMAARLRSHVRETDTVARLGGDEFGVILIGMASDETLGRYCSGLVHLL 413

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P +L   ++ + ASIG     S       +L++A+ A+Y AK  G             
Sbjct: 414 AAPCDLKCGQVQIGASIGAVRAASVDGGREAILRSADTALYRAKAEGRGRYCIATPEMND 473

Query: 702 SDRVM--IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R    I+ DL  AV    +++++Y PI     E IV  EAL++W+HP  G +    F+
Sbjct: 474 IFRRRHEIERDLREAVAEGGQIHVLYQPIFDAE-ERIVAAEALVRWNHPILGQMGPETFL 532

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I   +LE+    + +           + +NI+   L      + + A++
Sbjct: 533 SIAEETGLIDRIGHHVLEQACILVAT------SGIPRVSVNISPVQLRQETFADEVLAVM 586

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    S  R+ L  +E   +     +   L RLR  G+S+ LDDF T  SLL Y+     
Sbjct: 587 AAHSLSGERLVLELTEKFTLDAGPATLANLARLRAAGVSIALDDFATGQSLLRYVRDYQI 646

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +           I+R+I+ + + +   + A+ +      + L  MGC   Q
Sbjct: 647 DTIKIDRSYVARLGTGDGTDQIVRAILDLGRAMGIEVTAEGVERASQREALLGMGCHGFQ 706

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              +  P+    +  L   +    K+ 
Sbjct: 707 GYLLGRPMDPLRLAALSARKGVAQKSA 733


>gi|257791033|ref|YP_003181639.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
 gi|257474930|gb|ACV55250.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
          Length = 559

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 231/545 (42%), Gaps = 24/545 (4%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D ++  D+ RD    + ++     L    + G I  W   I   DR  F   +DS +
Sbjct: 24  STDDYLYIIDMQRDIALVSDNMRDDFDLPDSLVPGLIPLWRELIVERDRKRFDDSIDSML 83

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E++V+ A  +  W++ R     + NG    + G+   + E+K  +      
Sbjct: 84  SGETDCHDLEYQVKNALGESIWVMCRGLLKRDENGQPTMFAGVVTCL-ERKGKI------ 136

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D++TG+      ++ +  ++   +        VM++ +D + +IN + G A G+ VL
Sbjct: 137 ---DSVTGLFTHDECMNLIDRLIACESQGG-----VMLLGLDDFSRINLLNGHAFGNTVL 188

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               +    L+     + RL G+ F I++        + +   A+         + +   
Sbjct: 189 RMFAQSTQRLIPEGASMFRLDGDVFAIVMDG-AGCAAMEELYHAIHVVANRQHTIDDLSF 247

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-EDL 711
               S G A       ++ ++L+NAE A+  +K RG N    F  ++  +    ++  D 
Sbjct: 248 FCMVSAGIAMIGQDAQSAQDLLRNAENALEESKQRGKNTSTFFSSATIATKLRRLEISDY 307

Query: 712 CLA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +    +     L Y P++     +I G EAL++W+  + G +S  EF+ + E   +I 
Sbjct: 308 MQSSVLDDMKNFELYYQPLVCAETMDIAGAEALLRWNSEEHGQLSPVEFIPVLESYGLIG 367

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++LER       W +    P   + +NI+   LLD +    ++ L+ +T   P+ I
Sbjct: 368 QVGRWVLERSFTQCKRWSET--HPGFIMDVNISYLQLLDADFVPFVEQLVERTGVDPASI 425

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES  + + +  R    RLR IGI + +DDFGT  S L  L   P D VK +   +
Sbjct: 426 VLEMTESYFVTDMDALRATFDRLRSIGIRIAMDDFGTGYSSLGLLAQSPADIVKIDRLFI 485

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +    A + ++I +  ++   +  + +    ++  +  +G D IQ   V+ P+  
Sbjct: 486 KDIHREAFNRAFIDAVIELCHSVGIEVTVEGVEEPTELDAVRAIGADSIQGFFVSCPIPA 545

Query: 947 NSILK 951
           +S  +
Sbjct: 546 HSFEE 550


>gi|309388511|gb|ADO76391.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Halanaerobium praevalens DSM 2228]
          Length = 798

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/433 (28%), Positives = 215/433 (49%), Gaps = 12/433 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTGI NR+SFL+ L   L  S        T++++D+D +K+IND LG   
Sbjct: 374 ELEHQAKHDLLTGIANRRSFLEELQFELAKSKKT-----TIILLDLDNFKEINDTLGHVY 428

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L   +  + EL      +AR  G+ F I+L   ++  KI  +   ++K     + +
Sbjct: 429 GDQILKKFSSLLAELENKLVSVARFGGDEFLILLKETDSPQKIKKYIKKIKKLAVNHLEI 488

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            ++E+ +  S+G AS+      S +++  A+ AMY AK         +        +   
Sbjct: 489 NKQELYLGFSLGIASYPKDAKNSYDLITKADTAMYEAKKLYNQDYLFYNQKMINKMKNKK 548

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            IKE L  A++N    L Y P +++   EI  LEALI++   K   IS  +F+ +AEE  
Sbjct: 549 LIKEKLQKALKNDGFELKYQPQVKIKTGEIEYLEALIRFKDYK---ISPGQFIPVAEEYR 605

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++ E+  +++    ++     I I IN +++ L D    E + A + +   +P
Sbjct: 606 LINQIGRWVTEKAIKELAVLNNKKGR-NIKISINFSAQQLNDQGYIEFLTAKLKENRVAP 664

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +++  +ES+++ N  ++   L  L  +GI L LDDFGT  S L+Y+ YI FD VK + 
Sbjct: 665 EFLEIEITESLLINNEAKAIKYLTELSDLGIKLALDDFGTGYSSLNYVNYISFDKVKLDK 724

Query: 886 SLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            L+        +  + S+I +  +I+  ++A+ +      ++L  + CDYIQ    + P+
Sbjct: 725 KLIEEFLAYDNLETISSLIALFNSIKLPVVAEGVETREQYQKLKSINCDYIQGYLFSKPV 784

Query: 945 GFNSILKLLKERF 957
               + KLL + F
Sbjct: 785 LAAKLDKLLSQTF 797


>gi|332295902|ref|YP_004437825.1| hypothetical protein Thena_1067 [Thermodesulfobium narugense DSM
           14796]
 gi|332179005|gb|AEE14694.1| hypothetical protein Thena_1067 [Thermodesulfobium narugense DSM
           14796]
          Length = 721

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 232/555 (41%), Gaps = 17/555 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465
               +  S   +   D     + T P    I G +     G   + L   +H   ++ + 
Sbjct: 42  LEDVLSRSIQGIVITDSDNKIIYTNPAFTKITGYSREETIGQNPSILKSDMHS--KEFYS 99

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +       + G    +   +  D   +  II I  + ++ G I+ Y     DI++ +  
Sbjct: 100 DMWKKLK--KDGFFSGKIYNKRKDGTIYPEIITISIIKDNEGKIIYYTSFFIDISDIEDK 157

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I    F D+ TG+ N + F D+L  +       +     V+ ID+D +  +N + GI
Sbjct: 158 DKKIKYLMFHDSKTGLLNTKGFYDKLNEL-----ATNKNNFIVVYIDLDNFAYLNTLYGI 212

Query: 586 AVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             GD +L    + +  ++ K  D +     + F II +++ +            K     
Sbjct: 213 ENGDLLLKDFGQFLEQDVCKKEDYVCYFGSDEFAIISLNKTSENATDYIKELNIKIKNKE 272

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD- 703
            N+   ++ ++  IG + +         ++  A+ +   AK  G      +  S  +   
Sbjct: 273 FNINSNKVKLSGCIGVSMYPVDSNKPDSIISFAQASCVKAKQIGKGQCVFYSESIQKEFE 332

Query: 704 -RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +  ++  A+E  E  L Y PI  +  + I   EALI+W H + G +S   F+  AE
Sbjct: 333 NKLHLHTEITQAIERFEFELFYQPIFEISSKSINHAEALIRWRHNERGILSPYAFIPFAE 392

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I+ I+ +++E+   D+ + +D      + I  N+ SK  L +   E  + +  K  
Sbjct: 393 ESDLIEKIDYYVIEKSLNDLKTLQDH--NINMSISANLTSKTFLSDNFLENFKKIFYKKN 450

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P+  +   +ES+ + N ER++  +  L KIGI   +DDFGT  S LSYL    F  +K
Sbjct: 451 INPNHYRFEITESIALSNVERTKKYIEELGKIGIYFNMDDFGTGYSSLSYLNRFNFKNIK 510

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    +      ++ SII M  ++   I A+ I  E        + C ++Q   +
Sbjct: 511 IDSSFVLNYEKDYKLATLVSSIINMLNSLNFDITAEGIENEFLFFAFNHLNCHFLQGYFL 570

Query: 941 ASPLGFNSILKLLKE 955
           + P+   + +  +K 
Sbjct: 571 SKPIPLKNFISFIKN 585


>gi|326795670|ref|YP_004313490.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546434|gb|ADZ91654.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 793

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 208/440 (47%), Gaps = 13/440 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+EQ+K    +   A  D LT + NR     +L        +       ++ ID+D +K 
Sbjct: 341 ISEQRKKAA-LQYQANHDYLTELHNRYYLDQQL------VRSGTETPFFMIFIDLDNFKA 393

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G  +GD VL S+ +R+   +   D+L R SG+ F I++ +E +   I      + 
Sbjct: 394 INDGYGHELGDKVLKSVAQRLKVFVSDSDLLIRYSGDEFIIVVYNEIH-QTIVTRCENIL 452

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRV 697
            S   P  + +    ++ASIG A++        E+ + A+LAMY +K             
Sbjct: 453 SSFEQPCVIDDYSFVLSASIGVAAYPEDGTDLDELKRYADLAMYESKKTLNTITFFQEDF 512

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  ++++L  A+   E Y+VY P I + +  + G+EAL++W++   G +   +F
Sbjct: 513 REAYKYRAQMEQELKQAIVLDEFYMVYQPQI-MRNGGLFGVEALVRWENKTLGMVPPDKF 571

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    I AI  F++ER  +DI+  +       I + INI+ K          +  L
Sbjct: 572 IPVAESSGAILAIGDFIIERSFQDIVEVQRDTG-INISVSINISIKQFQHKHFLNKLVKL 630

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I K  +    + L  +E++ + +    + ++ +++  GI ++LDDFGT  S LS L ++P
Sbjct: 631 IEKHAFIYVELVLEVTENLFIDDVIGIQAIMHKIKSKGIRISLDDFGTGYSSLSLLSHLP 690

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++      K  A++  II +A+ +  T + + +  E   + L  + CD  
Sbjct: 691 IDELKIDKSFISEITTDPKTRAMVEGIIAIAQQLNFTTVVEGVETEEQRQILQSLECDIF 750

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  H + PL  + +   ++ 
Sbjct: 751 QGYHFSKPLKVHDLKTFIQS 770


>gi|328470416|gb|EGF41327.1| hypothetical protein VP10329_06447 [Vibrio parahaemolyticus 10329]
          Length = 477

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 213/441 (48%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D+LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 35  ILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRI-----QSGDPFSVILFDVVNFKQ 89

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ + LK  D + R+ G+ F I+  S        +   ++ 
Sbjct: 90  VNDAMGHFCGDQLLIQIGQRLQDKLKGNDKIFRVGGDEFVILTSSACEKTG-TELIESLD 148

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    I++  ++K+A++AMYHAK  G         +
Sbjct: 149 CALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDM 208

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 209 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDF 268

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 269 IPIAERSNQVHNITMWVLGQVEKDLKTFIEKG--IKLPVHVNLSAKDLSSNLLFHRLEKL 326

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 327 LENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 386

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 387 VDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDII 446

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 447 QGYLFCPALPLNEVINWVNEH 467


>gi|153836562|ref|ZP_01989229.1| ScrG [Vibrio parahaemolyticus AQ3810]
 gi|149750160|gb|EDM60905.1| ScrG [Vibrio parahaemolyticus AQ3810]
          Length = 568

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 236/560 (42%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNQGFYEQLGINAGRI--NLDRWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+     +D+ +     R+   +R+R  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSKRVDAHINTDNKRVTTTYRLRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  +   +       +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLLLDIEEHV----CSTDTPTSICYIQINEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + + ++  L + +  L      + R+  + F I++  + +   +  +A  
Sbjct: 186 KSYLNQYGNELVNGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILIQDDCSIDTLQAYAET 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + +  + 
Sbjct: 246 IKQTYHEAVVEEGQYLGSNISIGLYPCIDPAHSADEILRKAARTCQYASEQNKDRIAIYS 305

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +         I++ L  A+E   L + + PII     E+V  E+L++W   ++G I  
Sbjct: 306 QRTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIINAKSSEVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  +I  +   +  +  + I  +R++     + + +N++   L++ E    +
Sbjct: 366 DEFIPVAEKKGLIVELGYQVFAKTCQFIKQYRERYQNE-VRVNVNVSVLQLMNGEFPSRI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +   +P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEAGVAPQSIVLELTETFILDNNQTAMSPLNTLRELGFALSLDDFGSGYSSLNCFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M       ++ + I         T+MG 
Sbjct: 485 DLPMTQIKIDKSMAWKTLTNHSSREYLKFLIAMCHENNIEVVIEGIEDAKMCDFFTQMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|28898151|ref|NP_797756.1| hypothetical protein VP1377 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28806365|dbj|BAC59640.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 599

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 239/573 (41%), Gaps = 13/573 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T I    A+    + +    ER         + ++  D     V         LG+ +G
Sbjct: 32  LTTIFDQQASDNDREFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNQGFYEQLGINAG 91

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +   +  WL  +H  DR+     +D+ +     R+   +R+R  + Q+ W+        
Sbjct: 92  RI--NLDRWLDLVHPLDRERLSKRVDAHINTDNKRVTTTYRLRKPNGQYVWIEGVAMTKE 149

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G     +G   DI+E+K     I   AF DN +G+ NR   L  +   +       +
Sbjct: 150 TEHGH--YMVGSHRDISERKLMESYIHQVAFHDNASGMANRAHLLLDIEEHV----CSTD 203

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              ++  I I++ K   +  G  + + ++  L + +  L      + R+  + F I++  
Sbjct: 204 TPTSICYIQINEIKSYLNQYGNELVNGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILIQD 263

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           + +   +  +A  ++++    +    + +    SIG         ++ E+L+ A     +
Sbjct: 264 DCSIDTLQAYAETIKQTYHEAVVEEGQYLGSNISIGLYPCIDPAHSADEILRKAARTCQY 323

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           A  +  + +  +   +         I++ L  A+E   L + + PII     E+V  E+L
Sbjct: 324 ASEQNKDRIAIYSQRTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIINAKSSEVVSFESL 383

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W   ++G I   EF+ +AE   +I  +   +  +  + I  +R++     + + +N++
Sbjct: 384 VRWRSKEFGEIYPDEFIPVAENKGLIVELGYQVFAKACQFIKQYRERYQNE-VRVNVNVS 442

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L++ E    ++A+  +   +P  I L  +E+ ++ N + +   L  LR++G +L+LD
Sbjct: 443 VLQLMNGEFPSRIKAMADEAGVAPQSIVLELTETFILDNNQTAMAPLNTLRELGFALSLD 502

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S L+    +P   +K + S+   T +       L+ +I M       ++ + I 
Sbjct: 503 DFGSGYSSLNCFFDLPMTQIKIDKSMAWKTLTNHSSREYLKFLIAMCHENNIEVVIEGIE 562

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                   T+MG DY+Q    + PL   S  + 
Sbjct: 563 DAKMCDFFTQMGVDYLQGYWFSKPLSVASASRY 595


>gi|158424850|ref|YP_001526142.1| putative signal transduction protein [Azorhizobium caulinodans ORS
           571]
 gi|158331739|dbj|BAF89224.1| putative signal transduction protein [Azorhizobium caulinodans ORS
           571]
          Length = 611

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 198/439 (45%), Gaps = 11/439 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +    E +   A  D LTG+ NR+ F   +   L            V+++DID +K 
Sbjct: 175 IHVRAVDPEQLSLLASTDALTGLANRRQFYRAVEATLLC-----GHPCAVLMLDIDGFKD 229

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++LG    DDVL ++   +         +AR+ G+ F ++L    +      FA  + 
Sbjct: 230 INNILGPEAADDVLKAIAGLLSAETTAGATVARVGGDEFAVVLGGL-SEAMAESFARLLL 288

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFR 696
             I     L+  ++T++AS G A        ++E++ +A+LA++ AK        + S  
Sbjct: 289 SKITSLHPLVGEDVTISASCGIAFSPHDTKAAAELIGDADLALHAAKISRSASIALYSPA 348

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +   DR +   DL  AV N EL L Y P +RL D  +VG EALI+W HP  G +  + 
Sbjct: 349 LRNEALDRRLSSLDLHRAVSNGELRLFYQPQVRLDDGALVGAEALIRWLHPSRGLLLPAV 408

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   +   +   +  +++E        WR         + +N+ +  +   +L + ++ 
Sbjct: 409 FLPSLDAGPLASVVGRWVIEEGCAQAARWRRSGAG-GFRMAVNLFASQVRSGDLPKQVED 467

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +    P  ++L  +E++V+ N   +   L  LR +G+ +  DDFGT  + LS L   
Sbjct: 468 ALDRHSLPPEALELEITENIVLSNDAIALDALTELRAMGVGIAFDDFGTGFASLSLLTRY 527

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K + S +     + +  A++ SI+ M + +E  +IA+ I  E +   L    C  
Sbjct: 528 PVNCIKIDRSFVQAMLRSPREAAVVSSILQMGRALEIDVIAEGIETEEERSYLADRACPE 587

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q      P+       LL
Sbjct: 588 GQGYLFGRPMPAQEFEALL 606


>gi|157144711|ref|YP_001452030.1| cAMP phosphodiesterase [Citrobacter koseri ATCC BAA-895]
 gi|157081916|gb|ABV11594.1| hypothetical protein CKO_00437 [Citrobacter koseri ATCC BAA-895]
          Length = 847

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/493 (21%), Positives = 221/493 (44%), Gaps = 22/493 (4%)

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--------EQKKSLEGILCNA 533
            + V+  D     +         +  +   ++    D +        E+++  + I    
Sbjct: 364 TYPVKRRDGS---VAGTFAFYFRTQNEPDTFLVRIADASVHLCALAIEREEGRQQIDRLV 420

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNRQ     L  +L      +     V  +DI++++K+N+ LG + GD V++
Sbjct: 421 RFDALTGLPNRQYLYHHLDKLLS----GNEPELAVFFLDINRFRKVNESLGYSAGDQVII 476

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +L  R+ E       ++R+ G +F ++  +     + +  A  M+  +   ++   +   
Sbjct: 477 TLANRLQERFGPHHFISRVGGAQFVVVASACR-VDEASHLAELMQHIVGAEMSAAGQTFE 535

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFRSDRVMIKEDLC 712
           + A IG +           +L +AE AM   +  GG     +  ++     R+ +   L 
Sbjct: 536 LKACIGISHSI--GGDRETLLAHAESAMERVRESGGSYQFFNPELNQAVMQRLKLGMALR 593

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+    L L Y P IR  D ++ G EAL +W  P  G+IS   F+ +AEE   I+ I L
Sbjct: 594 NAITEGHLRLEYQPQIRAADGQVYGFEALTRWHDPHAGDISPGTFIPLAEETGEIEHIGL 653

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + L  + R +  WR +       + +N+++ +    +L   +  L+++     + + +  
Sbjct: 654 WALREVCRQLFEWRKKGTNVSA-VSVNLSAHNFRKPDLPRYIADLLNEYQLPGNILTIEI 712

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES +M   +     +  +R +G  +++DDFGT  S L+ L Y+P   VK + S +    
Sbjct: 713 TESAMMELTDEMLARVREIRAMGAGVSMDDFGTGFSSLASLAYLPVTEVKIDKSFIDRFA 772

Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             R   A++ +++ +  N++ T++A+ +      ++L +MGC  +Q    + PL  N++ 
Sbjct: 773 RDRRVNALVEAVVSIGHNLDLTVVAEGVENTHQHQQLRKMGCSVLQGFLFSRPLSANTLP 832

Query: 951 KLLKERFPLVKNT 963
             L+     +++ 
Sbjct: 833 VWLEAYRSPLQDA 845



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 21/200 (10%)

Query: 385 TVIQHVLATGYFSQGIFSDGE--RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             I ++ A    S+ +    +     LAV  +   V   D  R  V T     ++ G  +
Sbjct: 109 GRIHYMAAARDVSKEVARREQNRLLLLAVNNTDRAVVVLDEQRRIVQTNRAFTSMFGYGA 168

Query: 443 GSMHGP--IRNWLPYIHINDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIR 498
                       L   + +D       L     + RG    Q E      + +  W  + 
Sbjct: 169 DEAMNQVFPDFLLSSGNSDD------ALKRVEEHLRGSRWFQEELLTATRNGREVWSRVS 222

Query: 499 IRPMSNSNG--DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + P+ N          +    DITE     E  + N  +D L  + +R +F +    I  
Sbjct: 223 VNPVLNERDHRQTRNLVVTFVDITE-----ERNIRNLERDVLAALTSRMTFQETGDYICQ 277

Query: 557 LSAT-DDNLRPTVMVIDIDK 575
                   +  +V  I +D 
Sbjct: 278 RIGNIAPGVLVSVCRI-VDN 296



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 17/131 (12%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-----IRNWLPYIHINDRDNF 464
           A+  +   V   D     +        + G +   + G      I   L ++H +     
Sbjct: 12  ALEQTFMAVVLVDECNRVLFFNEAAEKLWGYSRDEVLGRDMNILIPGPLKHVHGD----- 66

Query: 465 RTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              +         R+     E ++   D    W    +  + + +G I  Y+  A D+++
Sbjct: 67  --YVHHHRDGGNSRVVGMNRELQLERKDGTQVWTSFSLSKI-DVDGRI-HYMAAARDVSK 122

Query: 522 QKKSLEGILCN 532
           +    E     
Sbjct: 123 EVARREQNRLL 133


>gi|157156733|ref|YP_001462766.1| cAMP phosphodiesterase [Escherichia coli E24377A]
 gi|157078763|gb|ABV18471.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           E24377A]
          Length = 807

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGTPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPENIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|323528363|ref|YP_004230515.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323385365|gb|ADX57455.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 657

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 216/453 (47%), Gaps = 14/453 (3%)

Query: 511 RYIGIANDI--TEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +    D+  +++K  +  +     A  D+LT +PNR+SF   L   L   A   +   
Sbjct: 199 GVVHTQRDLQASQEKTQRLSDENFRLASIDSLTDLPNRRSFFASL-RALSEQALATDGAF 257

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V +ID+D +K++ND+ G A GD VL  +  R+  L +     ARL G+ FG++     +
Sbjct: 258 NVGLIDLDGFKQVNDIYGHASGDLVLQEVGARLLALAEPGIFFARLGGDEFGVLAQDRQS 317

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              + D    +  S++ P  +      ++ +IG+A++  +  T +++ + A+ AMY  K 
Sbjct: 318 KDALLDLGQRICDSLSQPYRVGGNIAELSGTIGWAAFPDAGKTVTQVFERADAAMYVGKE 377

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                   F        R    + ++L  A   SEL+L + PI  ++    +GLEAL +W
Sbjct: 378 SRRGTAVIFSTEHETRIRRSSLVTQELRHADLESELFLEFQPISDVVTRRTIGLEALGRW 437

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            +P+ G +   EF+ IAE   +I  I   +L +   ++  W  +     +++  N+++ D
Sbjct: 438 HNPRLGAVKPEEFIRIAERTELILRITEVLLHKALAEVPHWPSE-----LYLSFNLSAID 492

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +  +     +  +++ +   P R+    +E+ +  + E++R  L  ++  G  ++LDDFG
Sbjct: 493 ISTSARARRLIDIVAASGVPPHRVSFEITETALTRDFEQARSALTMIKAAGCRVSLDDFG 552

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSY+  +PFD++K + S MT       +  I++S++ + KN+    + + +    
Sbjct: 553 TGYSSLSYVHRLPFDSIKIDRSFMTDVDSNSASKKIVKSVLDLCKNLGLECVVEGLETSS 612

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + +  +G   +Q    + P+   +I   L+ 
Sbjct: 613 QAEVVKALGARAVQGYLFSPPMRSGAISSYLQS 645


>gi|254450972|ref|ZP_05064409.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
 gi|198265378|gb|EDY89648.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Octadecabacter antarcticus 238]
          Length = 617

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/630 (21%), Positives = 250/630 (39%), Gaps = 36/630 (5%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +     L   +I   L+  L   V ++  T+    L           D +   +A   + 
Sbjct: 2   VLFIGLLAVVLILTPLIIHLSREVGILRLTLHDARLELVTA----VRDADYHRMASEHAS 57

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-----IHINDRDNFRTILDS 470
           D +   D+    +   P    I G+    + G             +  ++ + FR   D 
Sbjct: 58  DGLVVQDMKARILWANPAYLKIFGVTFDEIVGRNPLEFALPPNDAVSPDEIEAFRYCADD 117

Query: 471 FVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                        R+ R  D +  W  +        +G     I +  D+TEQ +  + +
Sbjct: 118 PQD-----WSLHERLNRHNDGREFWNQMNSSYNLAPDG-TQNAIVVCRDVTEQMEQKQKL 171

Query: 530 L-------CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                     A  D LTG+PNR +F   +   L    + D     ++ ID+D +K +ND 
Sbjct: 172 HETSNKLQHEATHDGLTGVPNRAAFKTFIGDAL---RSGDGTPVGLLHIDLDNFKAVNDT 228

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G + GD VL      I + ++  D+LAR+ G+ F ++    ++   + D +  +    +
Sbjct: 229 HGHSGGDAVLTHTADVIRQNIRDSDLLARVGGDEFVVVCPQTSDLALLDDLSTRLLDVTS 288

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P     R + + ASIG A   S K T+  +L  A+ A+Y AK  G N V  +       
Sbjct: 289 KPFAWSNRLLKIEASIGAAISQSEKTTAETLLVQADFALYEAKRTGRNRVALYDEDLHDR 348

Query: 703 DRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                +   +L  A++   L   + P + L   +I+GLE L++W HP  G I+  EF+ +
Sbjct: 349 HAFQSRRAIELANAIDTGTLDYWFQPTMSLETGQIIGLETLVRWVHPVDGVIAPDEFLPM 408

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            +EL ++ A++L  +     +  +         I I  N + + L   +    +   +  
Sbjct: 409 VKELGLMGALDLLSMTAALTEKRNLNHAGFG-DIGIAFNASPELLSHPDFIRRLIWGVEA 467

Query: 821 TLYSPSRIKLSFSESVVMGNPERS---RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                + + +   E+   G+   +     ++  L   G  + LDDFG   + LS+L  + 
Sbjct: 468 AGIERAHVTIKVLETTNFGDASETQSHAAIIRDLHDGGFQVHLDDFGVGFAGLSHLAKLD 527

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              VK +  L+T       R  I+R I+ ++ ++   +IA+ +  +     L  MGC  I
Sbjct: 528 VTGVKIDRGLVTNLLSDAIRGKIVRKIVVLSNDLGLNVIAEGVEDQATATALAGMGCGVI 587

Query: 936 QDSHVASPLGFNSILKLL--KERFPLVKNT 963
           Q   ++ PL  + +L  L  ++R    K  
Sbjct: 588 QGYWLSRPLPRDDLLDWLHDRQRQQRPKRA 617


>gi|332139907|ref|YP_004425645.1| sensory box protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549929|gb|AEA96647.1| sensory box protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 720

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/559 (21%), Positives = 225/559 (40%), Gaps = 20/559 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +         + A   S + +                  ++G    +M       L + 
Sbjct: 170 QRKAEQSFHLMASAFASSREPMLVLSPDLVITECNDAFIQLIG----AMVKDQWVGLDFN 225

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           HI         +D        ++++E +++    +   + I +  +  +       I   
Sbjct: 226 HI----FITEKVDKAQLASDKQVRFESKIKTQSGEIRVVDISVA-LFETYQQTSYLIATM 280

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+++K++   +   A  D LTG+ NR    + +T +++           ++ ID+D +
Sbjct: 281 RDISDRKRNEARLRQLALHDELTGLSNRNFLRESITGLVE-----SKKPFVLVFIDLDGF 335

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD  L  +  ++  +      + R  G+ F  +L S+            
Sbjct: 336 KAINDNAGHERGDIELQRVGAQLTAMFGPIGEVGRWGGDEFIAVLPSQTCEKIAEKSQQL 395

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +       I++   E+ ++ASIG A + +   +   +++ A+ AMY AK  G      + 
Sbjct: 396 IHHIEEDVISVKSSELRLSASIGIADFPAHSDSIEGLIQCADAAMYRAKELGKGQAFIYE 455

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              + S      +  DL   VEN  L         L + E+ G E L +W     G +S 
Sbjct: 456 PGLYESMTQQVSMVNDLRRTVENHLLDFYIQGKYDL-NGELKGGEVLCRWISGLHGVVSP 514

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ IAEE  +  AI L  LE     I     Q     I + +NI++  +LD    +  
Sbjct: 515 AVFIPIAEEQKLDSAIGLQALEAACDYISIMESQQG-ESIPLSVNISANQMLDPNFPQQA 573

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +      SP  I+L  +ESV + + + +   L  L++ G  L+LDDFG+  S LSYL 
Sbjct: 574 LKICMNNSVSPEYIELELTESVFIRDEKAALRALNTLKENGFRLSLDDFGSGFSSLSYLR 633

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              F+ VK + SL+ G        A+   +I M K+++  ++A+ +  E  +  + +   
Sbjct: 634 SFQFEVVKVDKSLIQGIHLDSKANALFNGLIAMLKSLQIEVVAEGVELESYLPFMQQADI 693

Query: 933 DYIQDSHVASPLGFNSILK 951
             +Q  +   P+ ++  L 
Sbjct: 694 QLMQGFYFDKPMPYDQFLA 712



 Score = 81.2 bits (199), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 7/153 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    ++ +  T   SQ    D E   LA+  S +  W W    DR+       ++   +
Sbjct: 35  LLVEKMESLYETLKQSQNAQKDLE---LALWASQESFWSWKAQCDRMEI--RSFSLHSES 89

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +  G +   L  +H +D +  +      +  +R R+++ FR++  D  F W+ +R R 
Sbjct: 90  VSTWSGTLIQLLERVHEDDIEGLQFHWSMALHGKRDRIEFSFRLKL-DEDFQWVRLRGRV 148

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   + G+ L  +G   DIT+Q+K+ +     A
Sbjct: 149 LERGNAGEALHIVGTTKDITQQRKAEQSFHLMA 181


>gi|256376678|ref|YP_003100338.1| diguanylate cyclase/phosphodiesterase [Actinosynnema mirum DSM
           43827]
 gi|255920981|gb|ACU36492.1| diguanylate cyclase/phosphodiesterase [Actinosynnema mirum DSM
           43827]
          Length = 718

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 138/677 (20%), Positives = 253/677 (37%), Gaps = 40/677 (5%)

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV----LYYTYFIIYHGMKGYERA 337
           V  +    +AC   +   +++ P +   +A   L  +     +             Y   
Sbjct: 54  VAALVAGVLACWLRVPRDAWWIPPLEGVVAFAALLLLPDPQVVVGFVIGATVRRALYPED 113

Query: 338 VLL----IPAWILIFIWFIGLWMAITKRL-DNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                                 +     +    +    +    + +         + VL 
Sbjct: 114 AGFWAKSAVVVGGYLTGLAASLLWGWGAIRPELLPTLLMPLAGMAVAAAALHEAARAVLR 173

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                +G        +  +  S   +   D     V        +L  A  +        
Sbjct: 174 AESAQRGAEHARATATAVLQASPIGLVLLDSGGVPVLHNERAQFLLDWAGQNGAAVPCPH 233

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
            P I           +             E  V   D       +R+    + +  ++  
Sbjct: 234 GPNI----------AVCEKGCRDADAEPVEVWVADRDRVLALHPVRVEQAGDEDRTLVAA 283

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    DI+ +++  + +   + +D LTG+ +R  FL  L   L            ++V+D
Sbjct: 284 V----DISVRRRLEDELRHRSERDVLTGLTSRSHFLHLLDRALRA------GDVGLLVLD 333

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K++ND  G   GD  LV+ +RRI   ++   + ARL G+ F ++     +      
Sbjct: 334 LDQFKEVNDTEGHDAGDQCLVAASRRIRAAVEPDAVAARLGGDEFAVLAPGL-DEQACGQ 392

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGN 690
            A ++   +  P + L  ++ + ASIG A  +++   + ++E+L++A+ AMY AK  GG 
Sbjct: 393 LAKSVLAELEKPWSDLGYDVRMQASIGVAVSSAAAGVVGTAELLRDADTAMYVAKREGGA 452

Query: 691 HVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              SFR         R   K DL  A+   +L L Y PI+ L    I G EAL++W+ P 
Sbjct: 453 RARSFRREMGEQALARQRDKLDLRAAIGTDQLVLHYQPIVDLATTAISGAEALVRWERPG 512

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +   EF+ +AE+  +I  +   +L         WR         + +N++++ L   
Sbjct: 513 RGLLGPGEFIGLAEQTGLIVPLGSSVLTSACTQAAGWRAAGRELG--VTVNVSTRQLSAP 570

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                +   +  +    S + +  +ESV     E +   L  +R+ G+ + LDDFGT  S
Sbjct: 571 GFLAALAKSLDVSGLQASALTIEVTESVWAD--EAAMRALMAVRETGVRVALDDFGTGYS 628

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LSYL   PFD VK + S      +      ++R II +A  +    +A+ I      + 
Sbjct: 629 SLSYLHRYPFDVVKIDKSFTWALGDTGRTAGVVRCIIDLADVLGAVTVAEGIETPEQAEW 688

Query: 927 LTRMGCDYIQDSHVASP 943
           L R GC + Q      P
Sbjct: 689 LRRAGCGFGQGFLFGRP 705


>gi|254502913|ref|ZP_05115064.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438984|gb|EEE45663.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 705

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/448 (23%), Positives = 196/448 (43%), Gaps = 15/448 (3%)

Query: 509 ILRYIGIANDITEQK----KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++  +     IT+ K             A  D++TG   R  F       L  S      
Sbjct: 258 LIMVLAALRQITQAKSELALQEREARRAASHDSMTGFTTRAQFYKEAERQLA-SEDVRMK 316

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             +++ +D+D  K++ND+ G   GD +++S   RI + L    ++ R+ G+ F I++   
Sbjct: 317 GASLVYLDLDNLKEVNDIHGHMAGDWLIMSQAVRIRKRLGPDVLIGRIGGDEFVILVEGR 376

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                     + +   +  PI    R I  + S G A +        +++++A++A+   
Sbjct: 377 VGEDHFPSNLVGLFDDLIEPIEFEGRLIDASCSAGIARFPDHGRGILDIIRSADVALQRC 436

Query: 685 KHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F       R +R  ++ +L  A+++ +  L Y  I+     E    EALI
Sbjct: 437 KAEGKRSYRLFDNRMDEERCERRQLRSELATALQDDQFELFYQSIVVSGTGERAHAEALI 496

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +S   F+ IA+E      I+ ++LER  RD  +W          + +N++S
Sbjct: 497 RWRHPERGLVSPGVFLPIAKEAGFTSEIDNWVLERAIRDASNWGTTG------VSVNVSS 550

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                    E +  L+     S  ++ L  +E +V+   + ++ +   LR + I L +DD
Sbjct: 551 SQFQKEGFAEHVADLLMTYGLSADQLLLEITEDLVLEEDQCTQKVFAELRDMNIGLAIDD 610

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   PF+T+K + S +   G +E+   ++R+++ +AK +    I + +  
Sbjct: 611 FGTGYSSLSYLHKYPFNTMKIDRSFVARIGISEENDMLVRTLLGIAKVMGMKTIGEGVET 670

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +     L   GC+Y+Q      P     
Sbjct: 671 QEQRDFLVNAGCEYLQGYLFDRPAPLAE 698


>gi|194292495|ref|YP_002008402.1| diguanylate cyclase(ggdef domain) and c-di-gmp phosphodiesterase
           (eal domain) [Cupriavidus taiwanensis LMG 19424]
 gi|193226399|emb|CAQ72348.1| putative diguanylate cyclase(GGDEF domain) and c-di-GMP
           phosphodiesterase (EAL domain) [Cupriavidus taiwanensis
           LMG 19424]
          Length = 442

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 199/425 (46%), Gaps = 8/425 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NRQ FL RL   L   A     R  +++I ID ++  ND+ G A GD +L  +
Sbjct: 19  DPLTGVDNRQGFLKRLEARLHSEAV---PRCALLLIGIDDFRAFNDMHGHAEGDIILQRV 75

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            RR+ +      ++ R+  + FG++L S  +   +     A+   ++ P     R   V 
Sbjct: 76  ARRLRDASPRDAVIGRIGSDEFGVLLPSIADPTLVRHVGAAILSMLSSPHEHAGRRHHVL 135

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
           ASIG     ++    S+ML  A LA+  AKH GG  +  F+         R+ + + L  
Sbjct: 136 ASIGACVAPAAGEQGSDMLAAASLALARAKHDGGRTIRFFKPQMRSDVTTRLSLVQALHE 195

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A    +  L+Y P I L D  + G EAL++W HP  G +S + F+       +   + ++
Sbjct: 196 AYAQRQFELLYQPQIDLRDGRVHGAEALMRWRHPTRGLLSPAAFIDALAGSSIASDVGMW 255

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+       +W      PP  + IN+ +  L +  L   ++ ++     +P  +++  +
Sbjct: 256 LLQTACAQARAWALAFPRPP-RVAINLFAAQLSEARLLTEVRHVLRALELAPDCLEIEIT 314

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E++ +   +     L  LR+ GI+LT DDFGT  + LS+L   P D +K + S +   TE
Sbjct: 315 ETIALQQGDEVADQLQALRRDGITLTCDDFGTGYASLSFLKSFPVDRLKIDQSFIRNVTE 374

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                AI+RS+I +  ++   ++A+ +        L   GC   Q      P+    + +
Sbjct: 375 DPVDAAIVRSVISVGASLHIGVVAEGVETPEQRDFLLANGCHEAQGYLYGRPMPAERLTE 434

Query: 952 LLKER 956
           +L+++
Sbjct: 435 MLRQQ 439


>gi|317055745|ref|YP_004104212.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315448014|gb|ADU21578.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 578

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 100/439 (22%), Positives = 203/439 (46%), Gaps = 16/439 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E I   A  D LTG+PNR +  + + ++L       N R  V+ ID++ +K IND +
Sbjct: 141 RFQEKIRDQAVTDRLTGLPNRFACRELVDSLLK-----QNERFAVVSIDLNNFKSINDTM 195

Query: 584 GIAVGDDVLVSLTRRIGELLKFP-----DILARLSGNRFGIILISENNSLKIADFAIAMR 638
           G   G+ VLV++  R   L +       D + R   + F +I+        IA      R
Sbjct: 196 GHENGNKVLVTIAERWKALAESGETGTLDFVTRQGDDEFTLIIRGYYYEKDIAATIKLYR 255

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFR 696
           + +   I + + +  +  S G+A + +       +   A+ AM+  K        +  F+
Sbjct: 256 ERLEKKITIDDCDFYIRGSFGYAFYPNDTDNIDHLFTYADAAMHEVKRLNSSECILRFFK 315

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I+  +  A+++  ++    P   +   ++ G EAL +       +I  SE
Sbjct: 316 EQLKLERTLDIERKIRKALDDDSIFFELQPQYDM-SYQLRGFEALARMKDADGNDIKPSE 374

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE++ ++  ++L +  + A+       +     I + INI+ + L+ N+  + + +
Sbjct: 375 FIPVAEKVGLVDKVDLCVFRQSAKFFGELVRKTGA-NITLSINISVRHLMKNDFLDEVIS 433

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I+ +     ++++  +ESV++ + E++   +  ++K+GI + +DDFGT  S LSYL   
Sbjct: 434 IITSSGIPAGQLEIEITESVLIDSAEKALQCINEIKKMGIKIAIDDFGTGYSSLSYLYNF 493

Query: 877 PFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +      R     + +II +   ++  +I++ +  E  ++ L  +GCDY
Sbjct: 494 PADLLKVDKSFIDNMNTNRSSKQYVAAIISIGHIMKYDVISEGVEKEDQLETLKEIGCDY 553

Query: 935 IQDSHVASPLGFNSILKLL 953
           IQ      PL       ++
Sbjct: 554 IQGFIWGRPLSMVEAENIV 572


>gi|294678378|ref|YP_003578993.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
            1003]
 gi|294477198|gb|ADE86586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Rhodobacter capsulatus SB 1003]
          Length = 1158

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/576 (20%), Positives = 236/576 (40%), Gaps = 32/576 (5%)

Query: 406  RQSLAVLGSGDIVWDWDI----VRDRVTTTPDIATILGLASGSM--HGPIRNWLPYIHIN 459
            R +     +   +++ +            +P    +LGL        G        + ++
Sbjct: 584  RLASIAAVAPAGLYEIERFPEGAATIPYASPHFRNLLGLDHRDTIRLGEGGGGAQEVKLD 643

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            D   F T  D+      G +   F ++       W+          +G ++ + G  +D+
Sbjct: 644  DLPAFLTR-DAASPVPPGGVARRFCIQHPLRGAVWLSNSATAKPQPDGTVV-WTGALHDV 701

Query: 520  T-------EQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            T       E   +        +     A  D LTG+PNR+ +   L   ++ +       
Sbjct: 702  TGDVRREAELHAAYRLAEDRRQENEWQALHDGLTGLPNRRYYDQVLANRIEQAKAGGKSG 761

Query: 566  PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             T++ ID+D +K +ND LG   GD VL  +   +   L+  D  ARL G+ F +IL    
Sbjct: 762  CTLIRIDLDHFKHVNDTLGHDAGDLVLCRVAEVLRASLRQGDFAARLGGDEFSVILARGL 821

Query: 626  NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                       ++  +  P+    R+    AS G A       T  E+   A+ A+Y AK
Sbjct: 822  GREDAGALIRRVQDRLVEPLMFAGRQCRFGASFGIAEAEDLASTGPEIQFFADAALYRAK 881

Query: 686  HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              G N +E F     ++      +  ++   ++  E    +   +   D  + G+E L++
Sbjct: 882  ETGRNRMEFFTPELHQNLRRDRELAAEIQEGLDRDEFEPFFQAQVSARDHRLTGVETLLR 941

Query: 744  WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            W HP+ G ++   FM +AE+L ++  I+  ++ER    +  WR++  + P  I  N++S 
Sbjct: 942  WRHPERGLLTPHAFMHVAEQLRLVPEIDRVVMERSRESLAFWRERGLIVP-KISFNVSSG 1000

Query: 804  DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDD 862
             + D ++ +  Q +        +R+     ES+++ +        L  +R+ GI + +DD
Sbjct: 1001 RMHDPDVVKAAQTIARGE----TRVTFELLESILVEDESDLFRFHLDAIREAGIDIEIDD 1056

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            FG+  + +  L  I    +K +  ++   G   +   ++R+II +A+ + T  +A+ +  
Sbjct: 1057 FGSGHASIIGLMQIGPSALKIDRRIVEPLGRDPQARHLVRAIIEIAETLGTATVAEGVET 1116

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E   + L  +GCD +Q    + PL     +   +  
Sbjct: 1117 EAQAEILRDLGCDVLQGFLFSVPLSAPDFVAFWQRH 1152



 Score = 78.1 bits (191), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 5/153 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +  + AT    +      E   ++   S    W           +P +AT+LG  +    
Sbjct: 147 LAALRATEEARRKARESAEILRISTENSDLAPWVHHPGHGSGELSPHLATMLGRPAN-PP 205

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +      IH  D    R    +    R  R   + R+R AD Q+ W   R   M  + 
Sbjct: 206 LDLAALAALIHPEDSLRMRRAFVALTRGRSDRFSQDMRLRRADGQWAWFTARGYRMPQTT 265

Query: 507 G-DILRYIGIANDITEQK---KSLEGILCNAFQ 535
               +   G   DI+ +K     +   L  A  
Sbjct: 266 PCQPVTLCGSLTDISARKADEALVARTLAEALH 298



 Score = 71.1 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 34/124 (27%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
              V + +    +         E    + L +G   +    ++    T  +   + G   
Sbjct: 286 EALVARTLAEALHARSRAQQREEMLRTSGLCAGIGHFCASPLQGEAWTPDETYRLFGFEP 345

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G        W   IH  D       ++           +  R +  D  +HW     R +
Sbjct: 346 GEFAATDAGWRSLIHPEDLPAAIAAMEDLKAGSTMLYDHVHRRQHKDGSYHWYRAVARRV 405

Query: 503 SNSN 506
             S+
Sbjct: 406 ERSD 409



 Score = 43.4 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 10/123 (8%)

Query: 405 ERQSLAVLGSGDIVWDWDIV-RDRV---TTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           ER       +   +++  +    ++     +  +  + G++   +         ++    
Sbjct: 445 ERLDTLADNAPGALFECRMAASGQMMLPYFSARLPDLAGVSGSEILCDACVVFRHVPPQ- 503

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                 +L   +   R     E R+  R       W+ +   P    +  +  + G   D
Sbjct: 504 --QMTRLLRRAMTALRSGAAIEMRLSVRHPLRGLRWVSVAAAPFRREDASVC-WFGQILD 560

Query: 519 ITE 521
           +TE
Sbjct: 561 VTE 563


>gi|330470192|ref|YP_004407935.1| diguanylate cyclase/phosphodiesterase with gaf sensor
           [Verrucosispora maris AB-18-032]
 gi|328813163|gb|AEB47335.1| diguanylate cyclase/phosphodiesterase with gaf sensor
           [Verrucosispora maris AB-18-032]
          Length = 825

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 102/435 (23%), Positives = 208/435 (47%), Gaps = 8/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  + ++ +  +A+ D LT +PNR+  L  L   +            +++ D+D+ +++N
Sbjct: 374 ENSRLVDRLRHDAYHDGLTKLPNRRRILGALAEAVR--IRAPGEVVALLLFDVDRLRQVN 431

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG A GD VL  +  R+   +    ++ R  G+ F + L    ++    + A  +R+ 
Sbjct: 432 ESLGHAAGDKVLTEVANRLRGCVPSAALVGRAGGDEFLVTLR-LESAEAAVELAGQLREQ 490

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSS 699
           I   +      + V  ++G           + +L+  ++A   AK   G   + +  + S
Sbjct: 491 IRDEMVFDALTLDVDTAVGVVVHPDHGSDPATLLQRVDVAATAAKSVPGSVQLYNPALES 550

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +  DL  A++N EL + Y P + L D  +VG+E L +W+HP  G ++ ++F+ 
Sbjct: 551 RSLRRLGLAGDLRSALDNGELEIYYQPKVTLRDRRLVGVECLARWEHPTHGTVAPADFVA 610

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE    +  +  F+L    R    W        + + +N++++ L D    E ++ L++
Sbjct: 611 VAEHTGQLGRLTEFVLREGLRHSRDW--AHGGQSLAVAVNLSARTLNDEHFPEQVRELLA 668

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P  + L   E+ V+   +R    L RLR +G+ L++DDFGT  S L++L  +P  
Sbjct: 669 EYDVPPQLLTLEIEEAGVLDGTDRPIPSLRRLRDLGVRLSVDDFGTGSSSLAHLRRLPVH 728

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S + G       +AI+ +++ +++    T++A+ +  E+ ++ L  +GC+  Q 
Sbjct: 729 EVKVDRSFVQGMATDPGDLAIVNAVVTLSQQFGLTVVAEGVESELTLELLQDIGCEIGQG 788

Query: 938 SHVASPLGFNSILKL 952
              + PL +  +   
Sbjct: 789 FLFSRPLPYERLEAW 803


>gi|262374968|ref|ZP_06068202.1| diguanylate cyclase domain-containing protein [Acinetobacter
           lwoffii SH145]
 gi|262309981|gb|EEY91110.1| diguanylate cyclase domain-containing protein [Acinetobacter
           lwoffii SH145]
          Length = 618

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 201/434 (46%), Gaps = 8/434 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + I     QDNLT +PNR    +    +L    ++       + ID+D++K +NDV 
Sbjct: 184 WANQQIENQTIQDNLTKLPNRLYLAEY-ANLLFSGQSEQQHEIAFLYIDLDRFKAVNDVF 242

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+ LT RI  LL     L R+ G+ F ++L +  +  K A  +  + + I  
Sbjct: 243 GHLVGDQLLIQLTTRIHLLLGHHSKLLRIGGDEFLLVLEN-TSVAKAAKMSEQILELIQE 301

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSF 700
              +  + I ++ SIG A +        ++L NA+ AM  +K++G N    F        
Sbjct: 302 SFLIEGKSIHISGSIGIAMYPEHGKNLQDLLVNADAAMLSSKYQGRNTYSVFNYSTDQDE 361

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  +  DL  AVE  +  L Y P     D  + G+EALI+W+HP++G +  + F+  
Sbjct: 362 SKSQSTLINDLYKAVEEQQFVLFYQPKFWTKDRSLCGVEALIRWNHPQFGLLGPNLFINA 421

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +  + LE   + I  W+   +     I +N+++       L   ++ L ++
Sbjct: 422 AEKTGLIIQMGYWALELACQQIQKWQR-THTEFFPIAVNLSAVQFEHKHLFSTLEKLFAQ 480

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + +  +ES  M + + S     RLR++GI L +DDFGT  S   YL     D 
Sbjct: 481 YKISPQHLMIEITESTAMHHIDVSMRSFKRLRQMGIRLAIDDFGTGHSSFLYLKNFAVDE 540

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +           IL SII +A  +   + A+ +  E   + LTR+GC+ +Q  
Sbjct: 541 LKIDREFIKNLAVGSTEEMILESIIQLAIKLGLVVTAEGVETEAQAEILTRLGCEQLQGF 600

Query: 939 HVASPLGFNSILKL 952
            +  P     +  L
Sbjct: 601 LLGLPGDEQRLENL 614


>gi|114332245|ref|YP_748467.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosomonas eutropha C91]
 gi|114309259|gb|ABI60502.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosomonas eutropha C91]
          Length = 574

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 208/442 (47%), Gaps = 5/442 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I    + D LTG+P    F ++   +L  +A  D +   +  IDI++  +IN  
Sbjct: 132 RQADSHIYRMTYYDELTGLPKHNLFCEKAAALLSNNAVIDGMIAAIYFIDINRLSRINSK 191

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G ++ D ++     R+        ILAR  G  F  +  S  N+ +   FA  + K   
Sbjct: 192 YGYSINDQLIQQFASRLSIYSDNSCILARTEGGNFVFLKTSLANTSQAQIFANQLLKLAT 251

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
            P  + + E  +T +IG   +         +L NAE A    +    N    +       
Sbjct: 252 TPFIINDLEFYITLTIGICLYPRDGREIEVLLANAENASSFTRKIWPNTYRFYAREIGEA 311

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +V I++ L   + + EL L Y P+I LM  +I+G+EAL++W HP+ G I   +F+ +
Sbjct: 312 SLQKVKIEQSLQKIINDKELVLHYQPVIDLMTGKIIGVEALVRWRHPELGLIPPDKFVPL 371

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A E   I  I  ++L    R   SW+D    P  FI +N+++ +L   +L   +   +  
Sbjct: 372 AIESGSIVKIGKWVLHEACRQAKSWQDAGLEPA-FIAVNLSAIELDQLQLINHVAEALHA 430

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   PS+++L  +ESV+M + + S  +L  L+K+G+ + +D+FGT  S L++L  +P DT
Sbjct: 431 TGLDPSKLELEINESVLMQDIDGSTRILNELKKMGVKIVMDNFGTGYSSLNHLRRLPIDT 490

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K    L+           I+ +II +A+N+   I A+ +  +  +  L +  C ++Q  
Sbjct: 491 IKIGQPLVQDIASKSDSSVIITAIIALARNLGMQIRAEGVQSQTQLDFLKQANCHHVQGF 550

Query: 939 HVASPLGFNSILKLLKERFPLV 960
               PL     L L+++R    
Sbjct: 551 LFTPPLSAEHFLPLIEQRKTGT 572


>gi|119468757|ref|ZP_01611809.1| GGDEF/EAL domain protein [Alteromonadales bacterium TW-7]
 gi|119447813|gb|EAW29079.1| GGDEF/EAL domain protein [Alteromonadales bacterium TW-7]
          Length = 640

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 219/447 (48%), Gaps = 14/447 (3%)

Query: 517 NDITEQKKSL-----EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +D+ E+ +       + I+  +  D+LT + NR +F   L           +    +  I
Sbjct: 198 SDLLERMELRVDARTKEIMHLSNSDSLTQLLNRNAF---LNDAKKRIKHYPDPPFALFFI 254

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K INDV+G  VGD+VL    +RI ++        R  G+ F +IL          
Sbjct: 255 DLDGFKNINDVMGHKVGDNVLRRTAKRISDVCAHNQQKCRWGGDEF-LILSDFVCKENTY 313

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           DFA  +  +I       E    V A+IG A +         ++ NA++AMYH K      
Sbjct: 314 DFAKEIIDAITQDHPETEHGARVGATIGIALYPEHGRDLDALILNADMAMYHQKRMNRGQ 373

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F  S       + ++ E+L  A+ N+   LVY PII     +I  +EALI+W   K 
Sbjct: 374 ISFFSESLRSELERKRLLSEELLTALINNCFSLVYQPIIDSKTHDIYAIEALIRWQL-KG 432

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            NI   EF+ IAE+  +I  I  ++LE   +  ++++     P + + IN++   L + E
Sbjct: 433 ENIPPDEFIPIAEQYGLISKIGFWVLETACQQALTFQKLT--PDLSVSINVSVMQLKEIE 490

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               ++++++   +   ++ L  +ESV   +      ++  L+++G+ +++DDFGT  S 
Sbjct: 491 FASKVKSILADLNFPAHKLHLEVTESVFANDKHTFLYVVKSLQELGVRISIDDFGTGYSS 550

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           LS +  +  D VK + S +    E+ ++I+ +++ MA ++   +IA+ +   +  K+LT+
Sbjct: 551 LSSMLDVGVDIVKVDKSFVQDEDERGLSIVNAVVQMASSLNFNVIAEGVETPLQCKKLTQ 610

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +G  ++Q  + + PL  +++++ L  +
Sbjct: 611 LGVTHLQGYYFSRPLTSSALIEYLNNK 637


>gi|332526953|ref|ZP_08403042.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Rubrivivax benzoatilyticus JA2]
 gi|332111392|gb|EGJ11375.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Rubrivivax benzoatilyticus JA2]
          Length = 619

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 194/420 (46%), Gaps = 15/420 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG  NR+SF+      L  +A        V+ +D+D++++ N+ LG   GD +L  
Sbjct: 200 HDPLTGALNRESFV----AALRRAAARRAGHSAVLCMDLDRFREFNEWLGRGAGDSLLRQ 255

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+   ++  D++ARL  + F  +L    ++  +A  A  + +++  P ++  R   +
Sbjct: 256 VAARLRATVRSGDLVARLGSDEFA-VLADTGDAEALATLAQRIVEALRQPYDVGGRRCEI 314

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
            ASIG A        +  +L+ A+LA+  AK  G      +          R  +  +L 
Sbjct: 315 GASIGIALHGVDSREADRLLQQADLALARAKADGRGTFRFYDARLDDELQRRRRLGAELR 374

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+    L L + P++      IVG EAL +W H + G +  + F+ +AE+  +I+ +  
Sbjct: 375 DALAADALVLHFQPLMDAASGRIVGYEALARWPHAERGWVPPASFIPLAEQTGLIEDLGA 434

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLL-DNELCEGMQALISKTLYSPSRIKLS 831
           ++L    R+   W       P+ + +N++      D  + E +   +  +  +P R++L 
Sbjct: 435 WVLRAACREAARWPA-----PLSVAVNLSPAQFRRDGGIAEVVAEALRDSGLAPERLELE 489

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES++M   E     L  LR +G+S+ +DDFGT  S L++L   P D VK +       
Sbjct: 490 ITESLLMARTEPVLRALRELRGLGVSIAMDDFGTGYSSLAHLWRFPLDRVKLDREFTHSL 549

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +      I+ S++ MA  +   + A+ +  E   + L   GCD +Q   +  P   + +
Sbjct: 550 ADDAKVGVIVGSVVSMAHALGMHVTAEGVETEAQRQALAAHGCDVLQGFLLGRPQPADRL 609


>gi|323947807|gb|EGB43804.1| AL domain-containing protein [Escherichia coli H120]
          Length = 778

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 277 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 321

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 322 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 379

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 380 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 434

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI +  +   +T SIG +           +L  A
Sbjct: 435 V-LVSLENDVSNITQIADELRNVVSKPIMIDNKPFPLTLSIGISY--DVGKNRDYLLSTA 491

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 492 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 551

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 552 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 610

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 611 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 670

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 671 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 730

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 731 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 776



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 97  YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 156

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 157 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 211

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 212 DVLAHLQNLVMTFSDITEERQIRQ 235



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            +   + +   P    + G     + G   + L  I  + R      +       + R++
Sbjct: 7   INENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIRHNREGGKARVE 64

Query: 481 Y---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               E ++   D    W    +  + ++ G +  Y+ +  D + +    E     
Sbjct: 65  GMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQL 117


>gi|260855208|ref|YP_003229099.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli O26:H11
           str. 11368]
 gi|257753857|dbj|BAI25359.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli O26:H11
           str. 11368]
          Length = 799

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|332532547|ref|ZP_08408424.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037968|gb|EGI74416.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 584

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 213/425 (50%), Gaps = 18/425 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           QD LT + +R ++++ +   ++ +   ++L+  ++ ID+D +K++ND  G + GD++LV 
Sbjct: 132 QDKLTLLIDRHAYIEHIDRQINHANQ-EDLKCALLFIDLDGFKQVNDSFGHSFGDEILVQ 190

Query: 595 LTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +  R+  +L+   +            L+RL G+ F I +   ++S ++ + A  +   + 
Sbjct: 191 VASRLANVLRHHKLSNINSANQLEQNLSRLGGDEFSIFIELLDDSDRVVEIAKHVLSELE 250

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
               L  + + ++ASIG A++  S  T   +L+ A++AMY AK  G    + +       
Sbjct: 251 KDFVLGNKIVKISASIGIAAYPESASTPQALLQLADVAMYRAKSDGKGIFKVYSPEMGNK 310

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 + E+L LA+   + YL + PI+ + D  I   EAL +WDHP  G I  SEF+ I
Sbjct: 311 MRRYHYLLEELRLALACKDFYLFFQPIVDVEDCMIDYFEALTRWDHPVEGMIPPSEFIPI 370

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  +++    R + +W +   M  + I +N++   L   ++ + +   + K
Sbjct: 371 AEESNLILELGDWIMLESCRQMAAWHNA-GMRKVKISVNVSGIQLKHRDIYDWIMKKLKK 429

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T    + + L  +ES  +    R    L RLR+ GI++ +DDFGT  S LS L  +P D 
Sbjct: 430 TGLPATSLMLEITESTFIQASPRIIKELSRLREEGITIAIDDFGTGFSSLSTLADLPIDV 489

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +  + + +    IL +I  + + +   I+A+ +      + + +MG   +Q  
Sbjct: 490 IKIDRSFIAQANKSQKYNDILNTISELGQKLGLKIVAEGVEEIGQFELVKKMGVSSVQGY 549

Query: 939 HVASP 943
            V+ P
Sbjct: 550 LVSRP 554


>gi|192359680|ref|YP_001980838.1| sensory box protein [Cellvibrio japonicus Ueda107]
 gi|190685845|gb|ACE83523.1| sensory box protein [Cellvibrio japonicus Ueda107]
          Length = 645

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 198/442 (44%), Gaps = 10/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++K    +      D LT + NR+  L  L   L+           +  ID+D  K  N
Sbjct: 169 HREKLERQLRELVSIDPLTKLLNRRGILAHLDQNLERLQRYQR-SFALFFIDVDGLKSAN 227

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  L +R+ ++++  D + RL G+ F  ++I+E +   I   A    ++
Sbjct: 228 DHWGHEAGDLLLRDLAQRLSDVVRKGDQIGRLGGDEF--LIIAECDEGHIELLAKRFLQA 285

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P     +   ++ SIG A         + +L+ A+ AMY AK +GG+      V + 
Sbjct: 286 LRAPFGEGRKRGRLSGSIGIAFAPQDGTDETSLLRKADAAMYVAKSQGGDRYHRASVRAA 345

Query: 701 RSDRVMI-KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +    +   D+  A+E  EL L Y PI +L D  I+G EAL++W       +++   + 
Sbjct: 346 PTTAAKLSIVDVEGALERQELQLWYQPICQLQDLSILGFEALLRWRRSDGDLVTAEPIIQ 405

Query: 760 IAE--ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
             E     +   +  ++L   AR    W+ +       I INI+++  +       +Q L
Sbjct: 406 ALEGSRGDLEYRLGNWVLREAARQFQRWQREGFNLD--IHINISARHFVHPVFLLELQRL 463

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                    ++ +  +E+ ++ + ER++ ++   R++G+ + +DDFGT    L+YL  +P
Sbjct: 464 CESHPAFGRKLIIEITETAMLEDLERAKRIMLGCRQLGVRMAVDDFGTGYGSLTYLKTLP 523

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +      ++   I + I+ +A  +   ++A+       I  L  +GCD +
Sbjct: 524 LDLLKIDRSFVADLPGNKVDWDITKGIVAIAHALGLAVVAEGAETWEQIGCLRELGCDQV 583

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q   +  P+ F+   + L   F
Sbjct: 584 QGYFIQRPMPFDEASRWLDTHF 605


>gi|332304640|ref|YP_004432491.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171969|gb|AEE21223.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 743

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/543 (21%), Positives = 233/543 (42%), Gaps = 28/543 (5%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D   + V         LG A+G     I   +  +H          ++  +  ++    
Sbjct: 219 IDKDENAVYV-------LG-AAGEFASYINTKIDNLHDE---KIVHAVNQCLQQQQHIYG 267

Query: 481 YEFRVRAADNQFHW---MIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQD 536
             F V   ++  +     +   + +S+    ++     +  I  E       +   AF+D
Sbjct: 268 KHFTVLYLNSSDYDAAVYLKVGQEISDEYKQLIEVFLSSISIGYENVNLFHQLHTAAFKD 327

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LT +PNR  F++RL  I   S   ++    V +IDI+ +  IND LG   G+D L++L 
Sbjct: 328 WLTKLPNRVEFINRLNDI---SNDAEHANDVVALIDINHFADINDGLGQDTGNDTLLALA 384

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI         L R+  + F ++        +       ++          +  + ++A
Sbjct: 385 QRIESTFPAASALGRIGSDVFAVVGT------EREVNPATLQGLFNNAFEAGDHMLPLSA 438

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLA 714
           + GF  +   K +   +LK+A +A+  AK     + E +   +    + R+ +   L   
Sbjct: 439 AFGFYRFNGKKHSGINILKHANIALNRAKKSLKTNFEYYAPEMEEQTTWRLDMIRQLRDD 498

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
               +L L Y P I L+ +EI+G+EAL++W     G +S + F+ +AE   +I  I  ++
Sbjct: 499 FGERKLQLWYQPQIDLVTQEIIGMEALLRWPSSDGGFVSPAVFVPLAEYSGLIIDIGAWV 558

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++     +    +      + + +N++     D    + ++  I+    +P  I+L  +E
Sbjct: 559 MQEACEKLRLLTEAN-FIGLRMAVNVSMPQFRDPAFIDLVKKAITDNSLAPDCIELEITE 617

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S+VM  P+     L  L++ G+ + LDDFGT  S +SYL  +P D +K + + +   +  
Sbjct: 618 SIVMDEPQLVVDALHELKEFGVKVALDDFGTGFSSMSYLQQLPLDRLKVDRAFVNEISPN 677

Query: 895 RIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + A +  +I+ +   +    IA+ I        L ++GCD  Q    A P+ F+ +L  +
Sbjct: 678 KSAFIAETIVTLGAKLGLRTIAEGIEKPEQANFLLKLGCDEAQGFMYAKPMPFDDLLTFI 737

Query: 954 KER 956
           ++ 
Sbjct: 738 EQH 740


>gi|218548933|ref|YP_002382724.1| cAMP phosphodiesterase [Escherichia fergusonii ATCC 35469]
 gi|218356474|emb|CAQ89097.1| cAMP phosphodiesterase, heme-regulated [Escherichia fergusonii ATCC
           35469]
 gi|324113243|gb|EGC07218.1| EAL domain-containing protein [Escherichia fergusonii B253]
 gi|325497366|gb|EGC95225.1| cAMP phosphodiesterase [Escherichia fergusonii ECD227]
          Length = 801

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 214/464 (46%), Gaps = 21/464 (4%)

Query: 508 DILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           +   +I    DI+        EQ+KS + I      D LTG+PNR +    L  ++    
Sbjct: 343 ETSGFIERVADISQHLAALALEQEKSRQHIEQLIQFDPLTGLPNRNNLHSYLDELV---- 398

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              ++ P V +I ID  + + D LG A  D  ++ +  RI + LK    L R+ G +F  
Sbjct: 399 -GKDISPVVYLISIDNLQDVIDSLGYAWADQAVLEVVHRIRDKLKPDQYLCRVEGIQFV- 456

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++  EN+   I   A  ++   + P+ + ++   +T SIG +           +L  A  
Sbjct: 457 LVSQENDVSTITQMADELKSISSPPVLIDDKVFPLTLSIGISY--DVGKNRDYLLSTAHN 514

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AM   +  GGN  + F  +  +  +  +     L  A+ N++L LVY P I     E+ G
Sbjct: 515 AMDFIRKNGGNSWQFFNPAMNQMVKERLILGAALKEAIANNQLRLVYQPQIYSETGELYG 574

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL +W+ P+ GN+  S F+ +AEE+  I+ I  +++    R +  WR  A   P  + 
Sbjct: 575 FEALARWNDPQHGNVPPSRFIPLAEEIGEIENIGRWVVREACRQLAEWRSLALNIP-TLS 633

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+++     ++L   +   + +      ++ +  +ES++M   E     +  LR +G+ 
Sbjct: 634 VNLSALHFRSSQLPNQVSEAMEEFAIPGGQLTVEITESMMMEQNEEILSRIQILRNMGVG 693

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKR-IAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S LS L  +P   +K + S +    +EKR  ++L +I  + + +   ++A
Sbjct: 694 LSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLSEKRIRSLLEAITSIGQRLNLEVVA 753

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           + +  +   + L  + C  IQ    + PL    I   +    PL
Sbjct: 754 EGVETKEQFELLQEIRCPVIQGYFFSRPLPAEDIPGWMTSALPL 797



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +  +     I ++      S  +    + + L  AV      V   D  R  V       
Sbjct: 107 LSKVTAAGKIFYLALVRDASVEVAQKEQTRLLIIAVDHLDRPVIVLDPERRIVQCNRAFT 166

Query: 436 TILGLASGSMHGPIRNWLPYIHI---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
            + G       G   + L  I     ++R   + +L  +     GR Q EF +     + 
Sbjct: 167 EMFGHCVSEAAGKQPDELLNIPELPSDNRLRVKQLLWKY-----GRDQDEFLMLTRAGEK 221

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            W+   I P+ +    +   +   +DITE+++  +
Sbjct: 222 IWIKASISPVYDKMSVLQNLVMTFSDITEERQIRQ 256



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTIL 468
           A+  +       +   + +   P    + G     + G     +  +   D R      +
Sbjct: 17  ALEQNMMGAVLINENDEVLFFNPAAEKLWGYTREEVIGNN---ISMLIPQDLRPAHPDYI 73

Query: 469 DSFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                  + R++    E ++   D    W    +  ++ + G I  Y+ +  D + +   
Sbjct: 74  RHNREGGKPRVEGMSRELQLEKKDGSKIWTRFALSKVT-AAGKI-FYLALVRDASVEVAQ 131

Query: 526 LEGILCN 532
            E     
Sbjct: 132 KEQTRLL 138


>gi|153840369|ref|ZP_01993036.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ3810]
 gi|149745969|gb|EDM57099.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ3810]
          Length = 551

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 213/441 (48%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D+LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 109 ILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRI-----QSGDPFSVILFDVVNFKQ 163

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ + LK  D + R+ G+ F I+  S        +   ++ 
Sbjct: 164 VNDAMGHFCGDQLLIQIGQRLQDKLKGSDKIFRVGGDEFVILTSSACEKTG-TELIESLD 222

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    I++  ++K+A++AMYHAK  G         +
Sbjct: 223 CALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDM 282

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 283 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDF 342

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 343 IPIAERSNQVHNITMWVLGQVEKDLKTFIEKG--IKLPVHVNLSAKDLSSNLLFHRLEKL 400

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 401 LENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 460

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 461 VDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDII 520

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 521 QGYLFCPALPLNEVINWVNEH 541


>gi|148550736|ref|YP_001260175.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
 gi|148503155|gb|ABQ71408.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Sphingomonas wittichii RW1]
          Length = 710

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 204/435 (46%), Gaps = 18/435 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I   + S       +  D LT +PNR++  +RL  ++            ++ +D+D +K 
Sbjct: 283 IEALRASELLARHLSDHDTLTELPNRRALGERLGELVAARQ-----GLALLFLDLDGFKD 337

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            NDV G + GD +L     R+         +AR  G+ F ++L S  +    A    A+ 
Sbjct: 338 ANDVYGHSAGDLLLKEAAGRLKAAAGE-AFIARAGGDEFAVLLRS-PSPGAAAATCEAIL 395

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++ + P  +    IT+  SIG+    +S   + E ++ A++AMY AK  G +    +  S
Sbjct: 396 EAFSTPFKVGAYSITIGTSIGYFETDTSCDGAEESIRKADVAMYAAKDAGRHCARVYHPS 455

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              S      +++DL  AVE+ E+Y+ Y PI+     E+V +EAL +W HP  G++    
Sbjct: 456 LDESHERRQRLEQDLKRAVEDEEIYVRYQPIVDAQSGEVVAVEALARWSHPVHGDVPPDV 515

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE   +I AI   +L    R++           + + +N++     D  L + +Q 
Sbjct: 516 FIPIAEISGLINAIGRQVLLHACREMRE-------TGLDLAVNLSPAQFWDGNLYDEVQQ 568

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +T + P R++L  +ES+++  P+ +  ++ RLR +GI + LDDFGT  + ++YL  +
Sbjct: 569 VLERTGFPPERLELEITESLLLRRPQVAAAVIDRLRSLGIRMALDDFGTGFASIAYLQQL 628

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + S +           +L SI+ +AK     + A+ I      +     GC  
Sbjct: 629 TIDRLKIDRSFLAPLESQPDMREVLISIVGLAKAYHLEVCAEGIETPGQAQLARIAGCGR 688

Query: 935 IQDSHVASPLGFNSI 949
           +Q      P   ++ 
Sbjct: 689 LQGWLFGRPQAASAF 703


>gi|88857514|ref|ZP_01132157.1| putative unknown membrane associated protein, GGDEF family of
           nucleotide cyclase/hydrolase [Pseudoalteromonas tunicata
           D2]
 gi|88820711|gb|EAR30523.1| putative unknown membrane associated protein, GGDEF family of
           nucleotide cyclase/hydrolase [Pseudoalteromonas tunicata
           D2]
          Length = 628

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 206/425 (48%), Gaps = 18/425 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           QD LTG+ +R ++L  L   L+ +  +   +  ++ ID+D +K++ND  G + GD+VL+ 
Sbjct: 164 QDKLTGLADRHAYLAHLQEQLNDAEKNQ-AKKALLFIDLDGFKQVNDSFGHSFGDEVLIQ 222

Query: 595 LTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           ++ R+  +++  ++            LARL G+ F I + S+  +    + A ++   + 
Sbjct: 223 VSERLRSVIRNHNLSHQHPTTMIELNLARLGGDEFSIFIESDTLAEHAVEVAQSVLFEVE 282

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
               L  + I + ASIG A +  S  ++  +L+ A++AMY AK  G      +       
Sbjct: 283 RDFVLGNKIIKIGASIGIAIFPDSASSAYALLQMADVAMYRAKTDGRGIFRVYSPEMGSN 342

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 + E+L LA+ +    L + PI+ + D  I   EAL++W HP  GNIS +EF+ I
Sbjct: 343 MRRYHYLLEELRLALASQNFTLSFQPIVHVEDCSIDYFEALVRWSHPIEGNISPAEFIPI 402

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L    R + +W +   M  + I +N+++  L    +   + A I K
Sbjct: 403 AEESNLILELGDWILHEACRQMSAWYNA-GMRKVRISVNVSAVQLKHRPIFNWVMATIDK 461

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  + L  +ES  +   +     L +LR+ G+ + +DDFGT  S LS L  +P D 
Sbjct: 462 VGLPAHALMLEITESCFIEASDVVIQELEKLRQAGVLIAIDDFGTGFSSLSTLAELPIDI 521

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +       K   IL SI  + K ++  ++A+ I      + + ++G   +Q  
Sbjct: 522 IKIDKLFIDQANDNPKYNKILNSISELGKELDLKVVAEGIEHANQFELVKKLGIQCVQGY 581

Query: 939 HVASP 943
            V+ P
Sbjct: 582 LVSRP 586


>gi|119952737|ref|YP_950384.1| sensory box protein [Arthrobacter aurescens TC1]
 gi|119951867|gb|ABM10776.1| Sensory Box Protein [Arthrobacter aurescens TC1]
          Length = 727

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 113/595 (18%), Positives = 233/595 (39%), Gaps = 45/595 (7%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           +             E    A+    D     D  ++ V       ++ G ++  M G   
Sbjct: 28  MLERAKPHKALVSAELLGQALDTVSDGSLITDAGQNVVYANKAFESVTGYSTAEMLGRNC 87

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L             ++ + +  R    + E      +    W  + + P+ ++ G I 
Sbjct: 88  RVLQG--PGSDPETIAMMRTVL-GRGETFRCEILNYRKNGTPFWNGLTVSPLRDAAGVIT 144

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            ++ +  D+T Q+   + +   A  D +TG+PNR +    L        +       V +
Sbjct: 145 HFVSVQRDVTAQRTMQDQLRFLALHDPVTGLPNRTALDQYL------FRSTGPGITAVGI 198

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN---S 627
           ID+D +K+IND  G   GD +L    RR+    +  D LAR+ G+ F +++   ++   +
Sbjct: 199 IDLDDFKEINDAYGHETGDALLTDFARRLQRRTRDQDFLARVGGDEFVVVITGLSSGNTN 258

Query: 628 LKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++  A A+  ++     +     + V  S+G A     K      L+ A+  +Y  K 
Sbjct: 259 EDLSHVAEALHDAVDTGFTIGPGVRVRVRMSMGLALCPPGKSGCEGALRRADAVLYRQKS 318

Query: 687 RGGNHVESFRVSSFRSDRVM---------------------IKEDLCLAVENSELYLVYH 725
           R     + + V +      M                     +  +    + +  L + + 
Sbjct: 319 RKVGRDKWWDVENLTPHPGMEKTMRALSAPARAETTSVSPALASEYRNRLFDGGLRMYFQ 378

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI--AEELCMIKAINLFMLERIARDII 783
           PII L   ++  LEAL +        + +  F+ +  AEE   +       L+     + 
Sbjct: 379 PIINLQSNQLHCLEALTRLVLKDGSIVPAGRFLPLLSAEETNALLRAG---LDEALSQLN 435

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W       P+ + +N++   L++ +    + A + +   +P ++ L   E+    + E 
Sbjct: 436 VW--DTVGSPVGVSVNLSPSTLINPDCSRWVAAALDRHSIAPEQLTLELLETHA-ADEET 492

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE---KRIAILR 900
            R  + +L  +G+ ++LDD G+  S L  L  +PF+TVK +  L+   T    K +A L 
Sbjct: 493 HRQAIQQLLDLGVGMSLDDLGSGHSTLKRLTALPFNTVKIDRQLLHQFTSSPLKTMAFLT 552

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++I M +++   ++A+ +      + +  +G  Y Q  H+A P+    +L  + +
Sbjct: 553 TMIQMGQDMGWAMVAEGLEDAALTEAVRILGIPYGQGFHIARPMPPEQVLPWIAK 607


>gi|320658965|gb|EFX26591.1| cyclic-di-GMP phosphodiesterase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 792

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 291 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 335

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 336 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 393

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 394 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 448

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 449 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 505

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 506 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 565

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 566 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 624

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 625 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 684

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 685 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 744

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 745 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 790



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 111 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 170

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 171 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 225

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 226 DVLAHLQNLVMTFSDITEERQIRQ 249



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 10  ALEQNMIGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 67

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 68  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 125

Query: 527 EGILCN 532
           E     
Sbjct: 126 EQTRQL 131


>gi|74312146|ref|YP_310565.1| cAMP phosphodiesterase [Shigella sonnei Ss046]
 gi|73855623|gb|AAZ88330.1| putative enzyme [Shigella sonnei Ss046]
 gi|323164463|gb|EFZ50265.1| putative enzyme [Shigella sonnei 53G]
          Length = 807

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|313896336|ref|ZP_07829889.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975135|gb|EFR40597.1| diguanylate cyclase (GGDEF) domain protein [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 555

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 223/554 (40%), Gaps = 24/554 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D  +  D V      +P       L + ++        P++++ DR    +
Sbjct: 12  YDLMKNTTSDYAFMMDPVEGIFLASPSFVQAYDLPAETLENISGVLGPFVYMQDRKPLAS 71

Query: 467 ILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           +  S      GR +  +FR+R A     W+ ++ +     +G    + G  + +  +  +
Sbjct: 72  LFASVNSLTEGRERQLDFRMRDAKGNLSWLRLKGKIGLAKDGTPNLFAGTISQLARRNSA 131

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                     D++TG+ NR  F++ LT  L  +          +V+ +D ++ +N+    
Sbjct: 132 ----------DSVTGLLNRYQFVEDLTAALRTARETGGGGGL-LVMGVDNFRTVNEAFNH 180

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD +L  ++ RI + +     L RL G+ FG+I     +   + +F I +++  A P 
Sbjct: 181 EVGDIILRQISERILQNIPRGLSLYRLDGDEFGLIYPD-ADEEMLTEFFIRVQREFAHPQ 239

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
               R+  VT S G   +  S      + K A+ A+  AK  G N + +F    +     
Sbjct: 240 VYDGRQYIVTVSAGMVFYPQSARDPLILHKYAQAALDAAKSGGKNRLSAFSKEVYNRWLR 299

Query: 706 MI---KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   ++ L           L + P +   D  IVG E L++W + K   ++  EF+ I 
Sbjct: 300 SLTIQEQILQDVKAGCRNFELYFQPQVAGDDRHIVGAETLLRWKNSKGRMVAPMEFIKIL 359

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  +  ++ E+  R    WR     P   + +N++ + + D    E +   + + 
Sbjct: 360 EETKTIVPVGRWIFEQALRTCKEWRRSI--PNFSMSVNMSYEQIKDLSFLEFIDDCLKRH 417

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + L  +ES ++G+ +         R  GI + +DDFGT  S L+ L  +  D V
Sbjct: 418 DMPPDSVVLELTESKIVGDMKFVNARFDAFRSHGIKVAMDDFGTGYSSLASLKNLNCDIV 477

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC--DYIQD 937
           K + + +    E      ++   + +  +I  T   + +    +   L ++ C  D IQ 
Sbjct: 478 KIDRAFVIRILENHFDQKLVEYTVDLCHSIGMTTCIEGVERPEEYDCLVKI-CKTDTIQG 536

Query: 938 SHVASPLGFNSILK 951
                P    +  K
Sbjct: 537 YLFGRPEPQEAFEK 550


>gi|148555835|ref|YP_001263417.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
 gi|148501025|gb|ABQ69279.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
          Length = 547

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 207/451 (45%), Gaps = 11/451 (2%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           RY  +  ++  ++ +       A  D LTG+ NR++  +     L  ++        +++
Sbjct: 77  RYRALKQEVALRRAAEARASELATSDPLTGLLNRRALGES-GARLVDASLGQRRPVAMLM 135

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SLK 629
           ID+D +K +ND+ G   GD +L + +  I   L    + ARL G+ F      + +    
Sbjct: 136 IDLDHFKSVNDLHGHLAGDQLLRAASAAIVAPLPPHALAARLGGDEFACAFAFDPDQPAA 195

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A A+   IA P  +   E  + AS+G A   +   T   +++ +++A+Y AK  G 
Sbjct: 196 VDHVADAILARIAEPFLIGGVEARIGASLGIARTEAGCRTIDTLMRRSDIALYAAKRAGR 255

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    F  S  R   +   I+  L   + +  +   + P + L    + G E L +WDHP
Sbjct: 256 NQRAWFDASMERELELRNEIELGLRAGIPSGRIVPWFEPQVDLATGALTGFELLARWDHP 315

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I  + F+ +AEE  +I  +++ ++     +   W      P + + +NI+   + D
Sbjct: 316 DHGIIEPAAFIPVAEEAGLIGELSMSVMRAGIEEARHW-----DPSLLLSVNISPSQMRD 370

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L + +  L+++T +   R+++  +E+ +  N   +  ++  L+   I + LDDFGT  
Sbjct: 371 PWLAQKIVKLLTETSFPAERLEVEITEAALFENLGLAASIVASLKNQRIRVALDDFGTGY 430

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L++L  +P D +K + S +   TE     A++R I+ +A+ ++  ++A+ +       
Sbjct: 431 SSLTHLRTLPLDRIKIDRSFVLRMTEDAEAAALVRLIVSLAQGLDVPVLAEGVETGEIAA 490

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            LT +GC   Q  H   P    +   LL  R
Sbjct: 491 MLTAIGCTMAQGWHFGRPAPARATRGLLAGR 521


>gi|27381342|ref|NP_772871.1| hypothetical protein blr6231 [Bradyrhizobium japonicum USDA 110]
 gi|27354509|dbj|BAC51496.1| blr6231 [Bradyrhizobium japonicum USDA 110]
          Length = 704

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 209/442 (47%), Gaps = 14/442 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +     A  D+LT +PNR+ F   L++    +    ++R  V +ID+D +K IND 
Sbjct: 256 QALSDENFRLANLDSLTELPNRRRFFAELSSAFVDAERR-SVRVAVGIIDLDGFKPINDN 314

Query: 583 LGIAVGDDVLVSLTRRIGELL----KFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            G +VGD VL+   RRI E            ARL G+ FG+++  +     +      + 
Sbjct: 315 YGHSVGDRVLIEAGRRIREACEGFGPQRVEFARLGGDEFGLVVCGDPEEADLTRLGERIG 374

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             + +P  L      ++ SIGFA +  S  T+  + + A+ ++YHAK         F   
Sbjct: 375 DQVKLPYQLDTAHTGLSCSIGFALFPQSATTAEALYECADYSLYHAKRHLRGRTVIFSSE 434

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                R    I+  L  A  ++E+ LV+ PI+  M E   G E L +W   + G +S ++
Sbjct: 435 LEAEIRSRGVIENLLRTADFSTEMDLVFQPIVDAMSEHTTGFEVLARWHSSRLGLVSPAD 494

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE + +I+ +   +L R      +W D      I +  N+++ D+   E    +  
Sbjct: 495 FIPAAERIGLIRPLTQALLIRALATARTWPDH-----IRLSFNLSAHDICSPEGILPLIT 549

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ K+   P RI    +E+ V  +  R++  +  L+ +G  ++LDDFGT  S LS++  +
Sbjct: 550 IVEKSGLPPHRIDFEITETAVTFDFVRAQQSIAALKAMGCGISLDDFGTGYSSLSHVHRL 609

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +    +      I++S+  +  ++E   + + +     +  L R+GCD+
Sbjct: 610 PLDKIKVDRSFVADINDNPVSHKIIKSLTGLCDDMEIACVVEGVETRAQLDSLRRLGCDF 669

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ  + A P+  ++I + L + 
Sbjct: 670 IQGYYFAKPMRGDAIGEYLAKE 691


>gi|254448188|ref|ZP_05061651.1| two-component response regulator [gamma proteobacterium HTCC5015]
 gi|198262314|gb|EDY86596.1| two-component response regulator [gamma proteobacterium HTCC5015]
          Length = 842

 Score =  396 bits (1018), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/775 (19%), Positives = 284/775 (36%), Gaps = 56/775 (7%)

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
               +      L          L +W   + + +   L           R H  V     
Sbjct: 72  YALILIYLIVVLPVGFLSSGEALSLWFQLAVMPIGVVLCWVW-AVAQLKRAHRYVEAALT 130

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
            G+        +  +       +       I  + + +II       +   +L  A  L 
Sbjct: 131 LGVTTCLSGTILCTFI------LGFDFFGVIAAFESIYIILIAFSVLKIGAILSLASCLG 184

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
               +   +       +     AL+   V + I     ++    A   F Q +    E+ 
Sbjct: 185 AF--VIACIGAWWVDASIDGLLALLFFGVPLAICALNGLMLEFAARKDFLQTLCHQKEKT 242

Query: 408 SLA--VLGSGDIVWDWDIV----------------RDRVTTTPDIAT--ILGLASGSMHG 447
            +A     SG    + ++                               I    +  +  
Sbjct: 243 HIAQQFQQSGLGRTETNVAIQQLLERTCEHMGWLLGRAKYVNQGQVGGLITQHVASEVSA 302

Query: 448 PIRNWLPYIHINDRDN------------FRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           PI   L                       +      +G ++      F V  AD     +
Sbjct: 303 PIGATLNTFWPERSTASFVTKAAASGLNAQEAHAIHLGEQKQSTHLVFPVVHADRCVAVL 362

Query: 496 IIRIRPMSNSNGDILR----YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
                 +   +          +   + +  +KK    +   A +D LTG+PNR + + ++
Sbjct: 363 EFISPRLEALDTHASALMEQIVQQCSQVIGRKKQQRALQQIALKDRLTGLPNRSALIGQI 422

Query: 552 TTILDLSATDDNL-RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
              +D S  D N     ++++ ID +K IN+  G   GD +L  L +R+   L     + 
Sbjct: 423 QRYIDKSLEDSNQSHCALLLMGIDSFKTINERHGQPYGDQLLTILGQRLRHHLPQHYSVF 482

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R+S + F I+    +++  +  F    RK +   I + +  +++T   G  +  +   T 
Sbjct: 483 RISSDEFAILAPYVDSNTSLQTFIDHARKVMNQKITIQDESVSITCGYGVTASFNGYQTG 542

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCL----AVENSELYLVY 724
             ML +A +AM+ AK +G N    F  S   +   R  + EDL         N+ LYL Y
Sbjct: 543 ENMLDDAIMAMHIAKQQGHNKGLVFEESMRSNILKRHQLIEDLRRNLLGDENNNPLYLEY 602

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             I+        G EAL++W H ++G I   E + +A +   + A+  ++L   A+ +  
Sbjct: 603 QAIVSSDTGRTSGFEALVRWQHSQYGKIRPDELIELAADSQQLSALTYWVLNTAAQQLGE 662

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W+     P + + +NI +     ++L   +   + +    PS ++L  +ES ++ +   S
Sbjct: 663 WQ--NIDPNLTMSVNICATFFAQDDLVHDIIDTLERHHVQPSTLRLEITESEIIEHISES 720

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              L RL +  I + LDDFGT  S   YL   P  T+K + S M      EK   ++++I
Sbjct: 721 MNNLNRLHQANIPVYLDDFGTGYSSFHYLASYPIHTLKIDKSFMHDIERDEKGGIVVKNI 780

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           I + +++   +IA+ +  +   + L ++ CDYIQ    + PL  +  ++ + ++ 
Sbjct: 781 ITLCRDLGLAVIAEGVENKRQAQFLKQLNCDYIQGYLYSKPLPKDDAVQHIGKQL 835


>gi|291282591|ref|YP_003499409.1| FOG: PAS/PAC domain protein [Escherichia coli O55:H7 str. CB9615]
 gi|290762464|gb|ADD56425.1| FOG: PAS/PAC domain protein [Escherichia coli O55:H7 str. CB9615]
 gi|320636921|gb|EFX06786.1| cyclic-di-GMP phosphodiesterase [Escherichia coli O157:H7 str.
           G5101]
 gi|320653260|gb|EFX21399.1| cyclic-di-GMP phosphodiesterase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|323156582|gb|EFZ42728.1| putative enzyme [Escherichia coli EPECa14]
          Length = 807

 Score =  396 bits (1018), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|325830714|ref|ZP_08164098.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325487121|gb|EGC89564.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 559

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/545 (21%), Positives = 229/545 (42%), Gaps = 24/545 (4%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + D ++  D+ RD    + ++     L    + G I  W   I   DR  F   +DS +
Sbjct: 24  STDDYLYIIDMQRDIALVSDNMRDDFDLPDSLVPGLIPLWRELIVERDRKRFDDSIDSML 83

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                    E++V+ A  +  W++ R     + NG    + G+   + E+K  +      
Sbjct: 84  SGETDCHDLEYQVKNALGESIWVMCRGLLKRDENGQPTMFAGVVTCL-ERKGKI------ 136

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D++TG+       + +  ++   +        VM++ +D + +IN + G A G+ VL
Sbjct: 137 ---DSVTGLFTHDECTNLIDRLIACESQGG-----VMLLGLDDFSRINLLNGHAFGNTVL 188

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               +    L+     + RL G+ F I++        + +   A+         + +   
Sbjct: 189 RMFAQSTQRLIPEGASMFRLDGDVFAIVMDG-AGCAAMEELYHAIHVVANRQHTIDDLSF 247

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-EDL 711
               S G A       ++ ++L+NAE A+  +K RG N    F  ++  +    ++  D 
Sbjct: 248 FCMVSAGIAMIGQDAQSAQDLLRNAENALEESKQRGKNTSTFFSSATIATKLRRLEISDY 307

Query: 712 CLA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +    +     L Y P++     +I G EAL++W   + G +S  EF+ + E   +I 
Sbjct: 308 MQSSVLDDMKNFELYYQPLVCAETMDIAGAEALLRWSSKEHGQLSPVEFIPVLESYGLIG 367

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++LE+       W +    P   + +NI+   LLD +    ++ L+ +T   P+ I
Sbjct: 368 QVGRWVLEQSFTQCKRWSET--HPGFIMDVNISYLQLLDADFVPFVEQLVERTGVDPASI 425

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES  + + +  R    RLR IGI + +DDFGT  S L  L   P D VK +   +
Sbjct: 426 VLEMTESYFVTDMDALRATFDRLRSIGIRIAMDDFGTGYSSLGLLAQSPADIVKIDRLFI 485

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +    A + ++I +  ++   +  + +    ++  +  +G D IQ   V+ P+  
Sbjct: 486 KDIHREAFNRAFIDAVIELCHSVGIEVTVEGVEEPTELDAVRAIGADSIQGFFVSCPIPA 545

Query: 947 NSILK 951
           +S  +
Sbjct: 546 HSFEE 550


>gi|190890156|ref|YP_001976698.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695435|gb|ACE89520.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 515

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 209/446 (46%), Gaps = 13/446 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR   ++ ++  + ++ + +   A  D LT +PNR+         ++           V 
Sbjct: 68  LRIRDLSREVARRLQAEKNVDWIACHDTLTELPNRRFLESVCARAMNE--RTAEEAYAVF 125

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +KK+ND+LG   GD VL ++ +R+  L    D + RL G+ F I+     N+  
Sbjct: 126 SIDLDGFKKVNDLLGHDHGDAVLKTVAQRLSSLF-PRDHVFRLGGDEFVILARRVGNAD- 183

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +  +I  P       + + AS+GFA +  +     +++++++ AMY AK +G 
Sbjct: 184 LVALGNRIVSAIGKPFTFNGAAVDLGASVGFALYPENGDELGQVIRHSDCAMYVAKKQGR 243

Query: 690 NHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N V+ F  S        I  + DL  A+  +E+   Y P++ L   +I+G EAL +W   
Sbjct: 244 NLVKPFVPSMQDELAKRIRTEGDLRAAIRKAEIVPYYQPLVDLKANKIIGFEALARWKTA 303

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               I  SEF+ +AEE  +I  +   +L R   D +SW  +     + +  N++   L D
Sbjct: 304 SGEFIPPSEFIPVAEEAGLIVELTDQLLRRACTDALSWPSE-----LVLSFNLSPIQLSD 358

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++        R++L  +ES ++ +   +R++L  L   G+ + LDDFGT  
Sbjct: 359 RLLGLRILKILGDVGLPAHRVELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGF 418

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L    FD +K + S +    + +K+  ++++II +   +   I A+ I  E  ++
Sbjct: 419 SSLSQLSSYRFDKIKIDRSFVASFETNDKQDKVIKAIIALGAGLGVAITAEGIEEESQLQ 478

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L  +GCD  Q   +  P     I  
Sbjct: 479 RLQDLGCDIGQGYLLGRPAPIEEIAA 504


>gi|153835477|ref|ZP_01988144.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi HY01]
 gi|148867964|gb|EDL67165.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi HY01]
          Length = 512

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 218/441 (49%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D LTG+PNR+   +++   +  SA       +V++ D+  +K+
Sbjct: 70  IHELHAVAEREKHNAVHDALTGLPNRKFCFEQIDNRIQESA-----PFSVILFDVVNFKQ 124

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD +L+ + +R+   L   D + R+ G+ F  IL S       ++    + 
Sbjct: 125 INDAMGHFSGDQLLIQIGQRLQTELSGDDQIFRVGGDEFV-ILTSCAEYGAGSNLVERLD 183

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   NL E +++     G +++     ++  ++K A++AMYHAK  G      +  +
Sbjct: 184 SAMSQRFNLGEFQVSSRVVFGLSTFPFDAESNDLLIKCADIAMYHAKRNGQLMAFYNEDM 243

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W      NIS ++F
Sbjct: 244 NVGAKYQLEISSRIQCALEKDEFQLYYQPLIDAHTSLAVGFEAVIRWRDGNGKNISPNDF 303

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L+++ +D++S  +Q     + + +N+++KDL  N L   ++ +
Sbjct: 304 IPIAERSNQVHNITMWVLDQVEKDLLSLIEQGIR--LPVHVNLSAKDLSSNLLFSRLEQM 361

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S      + I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 362 LSDNPSFENLISLEITETMAIDRVLELNPLINQIKGLGIKISLDDFGTGYSSLSLLRDLP 421

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++ ++  E   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 422 VDQIKIDRSFLSTASKTEGTRSIVENTIALAHGLGYSVVAEGVQDMDTLHFLRSRGCDII 481

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  +   
Sbjct: 482 QGYLFCPALPLNEVINWVNNH 502


>gi|149911658|ref|ZP_01900268.1| GGDEF family protein [Moritella sp. PE36]
 gi|149805282|gb|EDM65297.1| GGDEF family protein [Moritella sp. PE36]
          Length = 628

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 205/430 (47%), Gaps = 6/430 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D LTGI N+ S + ++  +L+    DD+    V+ + I  +K IN+  G A+GD 
Sbjct: 200 YQQEYDGLTGIANQLSLVSQMDDMLESV--DDDNELAVIYLGIRNFKSINNSYGYAIGDK 257

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL+ +++RI + L    ++AR  G+ F I++  EN   ++ D    +  +      + + 
Sbjct: 258 VLLEVSQRIHQQLTTEYLVARCWGDAFAIVVRDENVVEQVIDLISRLSHAFESTFIIDDY 317

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-IKE 709
            IT     G A   S++     +++ AE AM  +K +G N+       S        ++ 
Sbjct: 318 TITTQVCFGIALADSAEDQGIALVEKAEAAMTASKDKGCNYNFFTEELSAVIGERHYLES 377

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++  E+ + Y PII +  + ++G EALI+W++P  G ++   F+ +AE+   I A
Sbjct: 378 HLADALDKHEMSVHYQPIICVKTQRVLGAEALIRWNNPILGAVAPDRFINLAEQNGQILA 437

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  F+L         WR         I +NI+   L D+ L   +  L++      S ++
Sbjct: 438 LGNFVLRTAMEQARHWRKSFGN-DFSIAVNISPVQLRDDNLVSRIAQLLAYYQLPGSALE 496

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E V++ + ++    L  L+K+G+S++LDDFGT  S LSYL    FDT+K + S + 
Sbjct: 497 LEITEGVLLQDEKKVAKSLDGLQKLGVSISLDDFGTGYSSLSYLQKYSFDTLKIDRSFIM 556

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                ++   + R+II MAK +   ++A+ +      + +   GCD+ Q      P+   
Sbjct: 557 NLMECDQDKELARAIIAMAKKLNLQVVAEGVETPEQHQFIVEEGCDFGQGYLYGKPVPAT 616

Query: 948 SILKLLKERF 957
                   R 
Sbjct: 617 MFTAQYLSRL 626


>gi|296128984|ref|YP_003636234.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
 gi|296020799|gb|ADG74035.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
          Length = 811

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/446 (25%), Positives = 210/446 (47%), Gaps = 25/446 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+   E +   A  D LTG+ NR  F  RL      +         ++++D+D +K +N
Sbjct: 364 EQRALQERLHHQATHDPLTGLGNRMHFAARLDDAGAATDR------ALLMLDLDGFKDVN 417

Query: 581 DVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD +L  +  R+ +++      LARL G+ F ++L  E    +  D A  + +
Sbjct: 418 DGHGHPAGDHLLQQVADRMRDVVDDEGATLARLGGDEFAVLL-DEAPGSRAHDTAWDLVR 476

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           +++ P  + +  I VTAS+G         T  ++L++ +LA+Y AK  G N V  F    
Sbjct: 477 ALSEPFVVEDEVIGVTASVGVRVLGPQ-DTGEDVLRDVDLALYAAKAAGKNQVVVFTPAL 535

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +  +DR  +  +L  A+   EL + Y P++ L    ++ +EAL++WD P+   +   +F
Sbjct: 536 RTEHADRSRLLTELRHALPGEELVVHYQPVVDLRTRRVLSVEALVRWDGPRGRVMP-DQF 594

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  +   +L R   D   W D      + + +N++++ +   E  + ++  
Sbjct: 595 IPLAEETGLIVPLGEHVLRRATADARPWWDAHG---VAVHVNVSARQVRRPEFVDVVRDA 651

Query: 818 ISKTLYSPSRIKLSFSESVVMG----NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ T    + + L  +E+ ++             L  LR +G+ + +DDFGT  S L+YL
Sbjct: 652 LASTGLPGAALVLEITETALLATGKVESAVVTAHLAALRGLGVRVAIDDFGTGYSSLAYL 711

Query: 874 GYIPFDTVKFNGSLMT------GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             +P D VK +G+           + +R A+  +I+ +   ++   +A+ I  E + + +
Sbjct: 712 QRLPVDIVKIDGAFTRFAARPGDESRRRRALATAIVELCATLDLVAVAEQIELETEARAV 771

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             +GC   Q      P+    I  LL
Sbjct: 772 QSLGCPLGQGYLFGRPVPAAEIAPLL 797


>gi|66045668|ref|YP_235509.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256375|gb|AAY37471.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 969

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 213/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 525 VRDRTRELDRANARLQHENSHDSLTGLPNRSHLQYRLRQAWQDFCRNGQ-QVIVMFIDLD 583

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       + A
Sbjct: 584 RFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFA-VLSIDTPLQTGTEIA 642

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG            +++L++A+ AMY  K+ G +   
Sbjct: 643 QRILTAFEQPFVIDDHTVFSSCSIGVVGADIRFHQEPADLLRDADTAMYRVKNGGRDSFA 702

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++  EALI+W  P   
Sbjct: 703 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNSGKLLAFEALIRWCMPDGR 762

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++L+ML R+   +    + ++ PP  + +N +S  +     
Sbjct: 763 IVGPESFLPALEGLRLIGRLDLYMLRRVVSILAQ-PENSHWPP--VHVNCSSYSITRPAF 819

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + AL+++   +P R+ L  +E  ++ +PE++RL +  L + G+S+ LDDFG   S L
Sbjct: 820 AAEVLALLAEQNVAPERLCLELTEGALVADPEQARLSMKLLAEHGMSVMLDDFGAGFSSL 879

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G T   +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 880 SYVHQYHFSGLKIDKSFIFGLTSSVRSRAIVRAIVRMAESLDLTVVAEGVEDRETLELLR 939

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 940 EIGATQAQGYYFSEPLPIE 958


>gi|304406522|ref|ZP_07388178.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus curdlanolyticus YK9]
 gi|304344580|gb|EFM10418.1| diguanylate cyclase/phosphodiesterase with MHYT sensor
           [Paenibacillus curdlanolyticus YK9]
          Length = 678

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 206/436 (47%), Gaps = 28/436 (6%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LTG+PNR    +R    L  +         V+ +DID++K IND LG  +GD +
Sbjct: 247 MAYTDPLTGLPNRYELSNRFDWFLQRANQ-----GAVLFVDIDQFKTINDTLGHEIGDLL 301

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           ++  ++R+ + L     + R+ G+ F +I+ +   +    + A  +  SI  P  L   E
Sbjct: 302 VLDASKRLAQ-LSESLQVFRIGGDEFLLIISNVGQAE-AEEMASRLLASIHRPFQLDGHE 359

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           + VT SIG + +       + +LK A+ AMY AK +G N  + F     +       +++
Sbjct: 360 LYVTCSIGISLYPEHGRDQTLLLKTADTAMYDAKSKGKNRFQLFHHGMEQRLVRRMALEK 419

Query: 710 DLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           DL  A++   E  + Y P          G EAL++W HP+ G +  SEF+ IAEE  +I 
Sbjct: 420 DLRRAMKRGGEFVVHYQPKWDTRIGGPSGFEALVRWQHPELGLVPPSEFIPIAEETGLIV 479

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ F+L++  +D + W        + I +N + K    + L + ++  + +    P R+
Sbjct: 480 GLSRFVLQQACQDCLRWERDGYGE-LTIAVNTSVKLFDSHLLYDTVRESLEQCKLPPERL 538

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+V+ +       L ++R +G+ +++DDFG+  S L  L  IP DTVK +   +
Sbjct: 539 ELEITESIVIHDMTDVIAQLNQIRSLGVKVSMDDFGSGYSSLGTLDRIPIDTVKIDRMFV 598

Query: 889 TGST-EKRIAILRSIIPMAKNIET--------TIIAKDIYGEIDIKELTRMGCDYIQDSH 939
             S    + AI+R+I+ +A+ +                   E  +  L   GC  IQ  +
Sbjct: 599 NESHLPAKQAIIRTIVMLAQQLGLEVVAEGVEE--------EQQVALLIESGCPVIQGYY 650

Query: 940 VASPLGFNSILKLLKE 955
              P+    +   L +
Sbjct: 651 FGKPMDDIRVRVWLDD 666


>gi|302381925|ref|YP_003817748.1| diguanylate cyclase/phosphodiesterase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192553|gb|ADL00125.1| diguanylate cyclase/phosphodiesterase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 555

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/554 (24%), Positives = 236/554 (42%), Gaps = 38/554 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   +W W    D +  T      LGL   +       ++      DR     IL 
Sbjct: 18  ALAAADSALWIWTPAEDSIRFT-GATRSLGLGPLAPECSGAAFIALSLPQDRSLAERILK 76

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGIANDITEQKKSLEG 528
                    +    R+R ++    W     R +   +G      + +   I+   K    
Sbjct: 77  PAEEG--TEIAVRLRMRGSE-TCLW-----RGVWLEDGLRAAGMVAVEAKISGSDK---- 124

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
                  D LTG+ +R++FL R    L      D     ++V DID+ +++N+ LG    
Sbjct: 125 -------DALTGLLDRRTFLTRAAETLTAPGEYD-----MVVADIDRLRRLNEALGHERT 172

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D V+ +L  R+          AR+  + F  IL        I + A  +R+++  P+ + 
Sbjct: 173 DMVISALGSRMSAAFSNEASPARIGEDEFAAILPR-----GIGNAADRLREALEQPLRVA 227

Query: 649 EREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
             +I  T SIG  +         ++E+L+  ELA+  AK  G   V  +     S    R
Sbjct: 228 GFDIYPTVSIGSVTCEGGPDAPDAAELLRRVELAVGSAKKVGRGGVAVYGRALESDSLSR 287

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++ DL  A    E+   + PI+ L    + G EAL +W HPK G +   EF+ + +E+
Sbjct: 288 LALEADLRNAFVRGEIEPFFQPIVNLNTGAVAGFEALARWRHPKRGLVPPDEFLGLTDEM 347

Query: 765 CMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLY 823
            ++  + L M+ + AR +  W  +  M   +F  +N++  ++    L E +  +I +T  
Sbjct: 348 GLMNDLGLMMMTQSARQLADWLQRHPMAGKLFCSVNLSVGEIERPNLVEDVARVIKETGL 407

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               +KL  +E  +M +   + ++L +L+ +G SL LDDFGT  S LSYL  +PFDT+K 
Sbjct: 408 PRGALKLEVTEGDIMRDTATAAVILQKLKDVGASLALDDFGTGFSSLSYLARLPFDTLKI 467

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +    +      I++S++ + +++   ++A+ +      K L    C Y Q    A
Sbjct: 468 DRYFVLTMNKDEGSAKIVKSVVNLGRDLNLEVVAEGVENATLAKLLLDASCHYGQGFGYA 527

Query: 942 SPLGFNSILKLLKE 955
             L        L E
Sbjct: 528 PALPAQEAEVYLNE 541


>gi|218134987|ref|ZP_03463791.1| hypothetical protein BACPEC_02892 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990372|gb|EEC56383.1| hypothetical protein BACPEC_02892 [Bacteroides pectinophilus ATCC
           43243]
          Length = 768

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 144/781 (18%), Positives = 294/781 (37%), Gaps = 48/781 (6%)

Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYM-VNRSSMLIPTFAMAWVVLGYISID 235
               ++             +       +F    ++  N +  L      A      I++ 
Sbjct: 26  SVQAFRRKGILARATFAYELSSFICGIVFAAYIFVPGNMAKTLCAGLTYAIFDWIIIALM 85

Query: 236 FGFLSKLVNLPSGELLIWRACSEI-ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIA 294
           +               ++R    +  L      F  + +  N W  KV YI       + 
Sbjct: 86  YY--------SQHYTGLFRGVRPVKILMYVYSAFDTVMMISNAWTHKVFYIDNISADSVN 137

Query: 295 ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           ++   +         I       +++     +I    + Y     +I   +++ + F   
Sbjct: 138 VVIGQASLVYK-AHFIYIYIGIIVIMLAYLMMIIKSSRFYRFRYEMIL--LVLAVSFTLD 194

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            + I      D+  P      +LI  L    V   V+                SL +   
Sbjct: 195 IVTIGNNSIYDLSTPVFSFMAILIYYLTFKYVPNEVIEN------------MLSLIIKDM 242

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D +  +D     + +      +    S  +HG         H +    +R  L+     
Sbjct: 243 NDGIVCFDNRGRCIYSNDVADMM--YTSDGLHGSKS------HEDFEAEYREWLEKHRDT 294

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           RR  ++Y+  V  A     +  I  + +++   + +    I NDI+E    LE     A 
Sbjct: 295 RRDYMKYDIPVTNAAGSKFY-EIEYKRINDEKNNHICDYFIVNDISEVIAKLEREKYKAS 353

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+ NR+ F +    IL     + + + +++  +I  +K IN++ GI  G+ VL+ 
Sbjct: 354 HDSLTGLLNREQFYEETRKIL---RNNPDRKYSIICSNIRDFKFINELFGIEKGNKVLIR 410

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            +  + E     D+ AR+  +RF +++ S++   +     I + +              +
Sbjct: 411 QSELMKEYQHNGDLCARMQNDRFAMLVPSDHKIEEHIISCINLMQE-----EFKSSLFRL 465

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
               G      +    S M   A +A    K+    +   +         +   I  +  
Sbjct: 466 HIFAGIYEIDDTDEPVSIMCDKANIASETIKNSYQKYFAYYNNELLERSIEERRIIGEFE 525

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N+E  +   P +        G EAL++W HP+ G +S + F+ + E+  +I  ++ 
Sbjct: 526 KAIDNNEFVMFLQPQVDCK-GMAYGAEALVRWQHPERGLLSPAVFIDVLEKAGLIYKLDR 584

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +M E+ A  +  W+ + +     I +NI++KD    ++ E    L+ K   +P ++KL  
Sbjct: 585 YMWEKAAEKLGEWKREGHDR-YHISVNISTKDFYLIDVYETFTGLVDKYNINPDKLKLEI 643

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+ +M + +++  ++ RL+  G  + +DDFG+  S L+ L  I  D +K +   +  S 
Sbjct: 644 TETALMADFKKNMEIIRRLQNYGFKIEIDDFGSGYSSLNMLKDISADVLKIDMGFLRASE 703

Query: 893 EK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +     IL SI+ +A  +   +I + +  E  +  L  MGC+  Q    + P+      
Sbjct: 704 NELKGRDILESIVSLAGKLGMEVITEGVEKESQVNMLKDMGCNMFQGYFFSKPVQIKEFE 763

Query: 951 K 951
            
Sbjct: 764 D 764


>gi|116695979|ref|YP_841555.1| hypothetical protein H16_B2043 [Ralstonia eutropha H16]
 gi|113530478|emb|CAJ96825.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 442

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 199/425 (46%), Gaps = 8/425 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NRQ FL RL   L    ++   R  +++I ID ++  ND+ G A GD +L  +
Sbjct: 19  DPLTGVDNRQGFLKRLEARL---QSEAVPRCALLLIGIDDFRAFNDMHGHAEGDLILQRV 75

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            RR+ +       + R+  + FG++L S  +   +     A+   ++ P         V 
Sbjct: 76  ARRLRDASPRDAAIGRIGSDEFGVLLPSIADPTLVRHVGAAILSMLSSPHENAGGRHHVL 135

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
           ASIG     ++    S++L  A LA+  AKH GG  +  F+         R+ + + L  
Sbjct: 136 ASIGACVIPAAGEQGSDVLAAASLALARAKHDGGRTIRFFKPQMRSDVTTRLSLVQALHE 195

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A    +  L+Y P + L D  + G EAL++W HP  G ++ + F+       +   + ++
Sbjct: 196 AYAQRQFELLYQPQVDLRDGRVHGAEALMRWRHPTRGLLAPAAFIDALAGSSIASDVGMW 255

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+       +W      PP  + IN+ +  L ++ L   ++ ++     +P  +++  +
Sbjct: 256 LLQTACAQARAWSLAFPQPP-RVAINLFAAQLSESRLLTEVRHVLRALELAPDCLEIEIT 314

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E++ +   +     L  LR+ G++LT DDFGT  + LS+L   P D +K + S +   TE
Sbjct: 315 ETIALQQGDEVADQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVDRLKIDQSFIRNVTE 374

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                AI+RS+I +  ++   ++A+ +        L   GC   Q      P+    + +
Sbjct: 375 DPVDAAIVRSVINVGASLHIGVVAEGVETPEQRDFLLANGCHEAQGYLYGRPMPAERLTE 434

Query: 952 LLKER 956
           +L+++
Sbjct: 435 MLRQQ 439


>gi|118593902|ref|ZP_01551260.1| diguanylate cyclase/phosphodiesterase [Stappia aggregata IAM 12614]
 gi|118433523|gb|EAV40192.1| diguanylate cyclase/phosphodiesterase [Stappia aggregata IAM 12614]
          Length = 715

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/460 (23%), Positives = 205/460 (44%), Gaps = 15/460 (3%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  GD+   +    D        + +   A+ D +T   NR  +   L+  L  +    
Sbjct: 242 RDEIGDLAHGLERVTD------LQDKLHKLAYTDPVTTAGNRARYFSDLSEALRRAK-SG 294

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +   +++ +D + + K+ND  G  VG+ VL+    R+  +      +AR+S + F I+L 
Sbjct: 295 SFSASLIHLDFNGFAKVNDTFGQQVGNRVLLQAYVRLANIFGPSAQIARISADDFCILLP 354

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +       D+A+     +++P  + E EI V  SIG A        +    + A LA+ 
Sbjct: 355 FDGKGAIAEDYAVQAIDMLSVPFQMEEGEIHVEPSIGIALLPQDAEDAETAHRMAGLALR 414

Query: 683 HAKHR----GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            AK            S  ++      ++ +  L  A++  +L L Y P +   D  ++GL
Sbjct: 415 AAKRSAGAGARYEFFSPPLNDRVQSEMLTETLLRAALQTRQLVLHYQPQVCPADGRLIGL 474

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W H K G+I  +EF+ IAE+  +I  +  ++LE   +    WR         + I
Sbjct: 475 EALLRWPHEKRGDIPPAEFIPIAEKTGLILELGGYVLETACKQAAQWRQAGFEFG-QVSI 533

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGIS 857
           N++      +   E ++  +       S + L  +E+V +   E+    +L +L+KIG+ 
Sbjct: 534 NVSPLQFRQSSFAETVRQTLKTYGLPASYLCLEVTENVFVDTREQLVMDILSQLQKIGVQ 593

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIA 915
           L+LDDFG+  S LSYL  +PF  +K + + ++   S  +R  +  +I+ + +++   +IA
Sbjct: 594 LSLDDFGSGYSSLSYLHRLPFQELKIDRAFISGADSHPQREQLFEAIVRLGRSLGLRVIA 653

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      +        CD IQ    +  +  + I   L+ 
Sbjct: 654 EGAETAGEFALTVTHKCDGIQGYICSPAVPADRIQSQLQS 693


>gi|120603981|ref|YP_968381.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio vulgaris DP4]
 gi|120564210|gb|ABM29954.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio vulgaris DP4]
          Length = 816

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/463 (23%), Positives = 215/463 (46%), Gaps = 10/463 (2%)

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              I  +    G       +A  I+++    + +   A  D+LTG+ NR++  + L   L
Sbjct: 339 ETAIESVREIGGLQTAVTRMAQAISQR---EQELAWFATHDDLTGLANRKALHEMLAARL 395

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSG 614
           D      +    V+ IDID++K IND +G   GD+V+ +   R+G  +       AR+ G
Sbjct: 396 DRLEEGASETVAVIFIDIDRFKAINDSMGHTWGDNVIAAFAARLGAFMHPLHAFCARVGG 455

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F  ++   + +  +     A+   +  P ++  RE+ ++AS G         +   ++
Sbjct: 456 DEFV-VVPDASATHNVVRDTRALLAHLGTPYDINGREVRLSASAGVLFVGDPGESPDVII 514

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMD 732
           +NA  AM+ +K RG   +  FR     S  + +  + +L LA    +L++VY PI+   D
Sbjct: 515 RNANAAMHRSKERGFGRISIFRPLHLDSYMLRLDIERELPLAAATGQLHMVYQPIVNASD 574

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +   EAL++W+HP+ G++S + F+ +AE+   +  +  F L      +  + +   + 
Sbjct: 575 GSLHSFEALMRWNHPRHGSLSPATFITVAEQTGHVGLLGDFALREAGACVRRFGEAGLLT 634

Query: 793 P-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P +   +NI+   L+  +    +++++        RI L  +ES ++         L  L
Sbjct: 635 PGLRFGVNISPAHLMAQDFLSDIESVLDAVSVPGDRITLEVTESALISTGAELMGRLETL 694

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNI 909
            K G++  +DD+G   S + YL    F  +K + SL+     +    AI+RS + +A ++
Sbjct: 695 AKRGLNFAIDDYGAGYSNIQYLASEHFRVIKIDKSLIDEVHLRDRMRAIVRSTVQLAHSL 754

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              I+A+ +        L R+GCDY+Q    + P+     ++L
Sbjct: 755 GCKIVAEGVETHAQANLLARLGCDYLQGYLFSRPVPETDAMRL 797


>gi|311232367|gb|ADP85221.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Desulfovibrio vulgaris RCH1]
          Length = 816

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 214/457 (46%), Gaps = 10/457 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +    G       +A  I+++    + +   A  D+LTG+ NR++  + L   LD     
Sbjct: 345 VREIGGLQTAVTRMAQAISQR---EQELAWFATHDDLTGLANRKALHEMLAARLDRLEEG 401

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620
            +    V+ IDID++K IND +G   GD+V+ +   R+G  +       AR+ G+ F  +
Sbjct: 402 ASETVAVIFIDIDRFKAINDSMGHTWGDNVIAAFAARLGAFMHPLHAFCARVGGDEFV-V 460

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   + +  +     A+   +  P ++  RE+ ++AS G         +   +++NA  A
Sbjct: 461 VPDASATHNVVRDTRALLAHLGTPYDINGREVRLSASAGVLFVGDPGESPDVIIRNANAA 520

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M+ +K RG   +  FR     S  + +  + +L LA    +L++VY PI+   D  +   
Sbjct: 521 MHRSKERGFGRISIFRPLHLDSYMLRLDIERELPLAAATGQLHMVYQPIVNASDGSLHSF 580

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFIL 797
           EAL++W+HP+ G++S + F+ +AE+   +  +  F L      +  + +   + P +   
Sbjct: 581 EALMRWNHPRHGSLSPATFITVAEQTGHVGLLGDFALREAGACVRRFGEAGLLTPGLRFG 640

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+   L+  +    +++++        RI L  +ES ++         L  L K G++
Sbjct: 641 VNISPAHLMAQDFLSDIESVLDAVSVPGDRITLEVTESALISTGAELMGRLETLAKRGLN 700

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
             +DD+G   S + YL    F  +K + SL+     +    AI+RS + +A ++   I+A
Sbjct: 701 FAIDDYGAGYSNIQYLASEHFRVIKIDKSLIDEVHLRDRMRAIVRSTVQLAHSLGCKIVA 760

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +        L R+GCDY+Q    + P+     ++L
Sbjct: 761 EGVETHAQANLLARLGCDYLQGYLFSRPVPETDAMRL 797


>gi|239993832|ref|ZP_04714356.1| diguanylate cyclase/phosphodiesterase [Alteromonas macleodii ATCC
           27126]
          Length = 542

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 211/438 (48%), Gaps = 11/438 (2%)

Query: 521 EQKKS----LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           EQK++     E +   A  D+LTG+PNRQ  LD L   L  +  +D      +  D+D +
Sbjct: 95  EQKQTLVDQQETMSRLANFDSLTGLPNRQFVLDNLRLELARAKRNDEDLLL-LFFDLDGF 153

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG   GD +L+ +  R+  LL+  D+ ARL G+ F ++   +  + +    A  
Sbjct: 154 KGINDSLGHETGDLILIEVADRVQCLLRDGDLFARLGGDEFLVLPDRDVTTDQAQSLATR 213

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +   P  L    +TV  S+G A+ + +    SE++ NA+LAMY +K RG      F 
Sbjct: 214 LITAFDEPFELRGLSLTVGLSVGIATASDAGYDLSELMSNADLAMYRSKARGRGSYTLFT 273

Query: 697 VSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                S   ++ +   +   + N E  + Y   +      ++G+EALI+W HP++G +  
Sbjct: 274 PDMVESHKRKLHLANGIEQGISNDEFVVYYQVKVNNE-GNVIGVEALIRWQHPEFGLVMP 332

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ IAE+   I AI  ++++R+  D+     Q    P    IN++  DL  ++L + +
Sbjct: 333 NEFIPIAEQGGKITAITRWVIKRVCIDMPDL-KQWATSPFRASINLSGHDLRSSQLFDYI 391

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                    +P  I+   +ES  + N   S     R+  +G ++ LDDFGT  S LSYL 
Sbjct: 392 YNTFKLYDINPENIEFEVTESAYLENFTLSNKFFRRIGNMGCAIALDDFGTGYSSLSYLT 451

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            I  DT+K +   +     +E+   +  +II +AK +  ++ A+ I        L   GC
Sbjct: 452 QINIDTLKVDRQFVMEIQTSERSRLVTGAIIDLAKRLSLSVCAEGIENLEQWNYLREHGC 511

Query: 933 DYIQDSHVASPLGFNSIL 950
           D +Q    + P+  + + 
Sbjct: 512 DNVQGFMFSKPIPLSELT 529


>gi|56461422|ref|YP_156703.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56180432|gb|AAV83154.1| Intracellular signaling protein (2 PAS, GGDEF,EAL domains)
           [Idiomarina loihiensis L2TR]
          Length = 681

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/609 (18%), Positives = 253/609 (41%), Gaps = 32/609 (5%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            I       I +    G + L   +   TV ++ L      Q +          +    D
Sbjct: 96  RIHWIAITSITRTLKNGDMALFGAIQDITVKKYRL------QQLQEQANTLRSTLDNLLD 149

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN----DRDNFRTILDSFV 472
            V   D     +  +     + G ++  + G     +  +       + D + +      
Sbjct: 150 AVITIDNNGMIINFSVPAERMFGYSAAEVKGKN---VSVLMPEPYAREHDRYISAYQKTG 206

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R   +  E + +    +   + + +  ++  +G+  +Y+G+  DITEQK++   +   
Sbjct: 207 HARIIGIGREVQAKRKTGEVFPIDLAVTEVT-YSGE-TQYVGVIRDITEQKENARKLEYL 264

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D  TG+PNR  FLD +   ++       L   V  ++ID + ++N + G   GD V+
Sbjct: 265 ANFDEQTGLPNRHRFLDLVEKRIE-----SQLPIVVAAVNIDYFNRVNTIHGHEEGDRVI 319

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + +R+ + +     +AR  G+RF + ++ ++    +A     +   +  P     +  
Sbjct: 320 QLIAQRMRKTIGDSGWIARDLGDRFWVGVMQDSTETSLA-IIDKLHGVLREPFKTAFQTH 378

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKED 710
            +TAS+G +        +S +L  A+ A  +A+H G + V   R  +S+        +  
Sbjct: 379 YLTASVGVSLSGGD-ENASGLLSQADTATSNARHSGRDKVAVHRAEISNSVVTDAETEVA 437

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  ++   +        +   +  + G EAL++W +     I   +F+ IAE   +I  +
Sbjct: 438 LRASLGKGQFECWLQSKVD-TNGVVRGAEALMRWRNEAGEIIPPDQFIPIAERFKLIIPM 496

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L ++A  +    D+       I +N++  + L ++  E +Q + ++     +++ +
Sbjct: 497 AKELLSQVAFVVRQLSDKGLND--RIAVNVSPIEFLQDDYVETVQRIFAEQNAPLNQLTI 554

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E++++ +PE     + RL ++G+  ++DDFGT  S    +  +P   +K +   +  
Sbjct: 555 EITENLLLADPEIVEQTMSRLAELGVVFSIDDFGTGYSNFMRIQQLPIGELKIDREFVQL 614

Query: 891 STEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +      +  L +++ M K++  + +A+ +  E  +K L   G D +Q  + A P+    
Sbjct: 615 AEVNDKHMGLLLAMLNMTKSLSVSSVAEGVETETQVKLLKENGADLLQGFYFARPV---H 671

Query: 949 ILKLLKERF 957
               L ER 
Sbjct: 672 FKDWLSERL 680



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 10/168 (5%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             + E  +     +    + ++     +  +P +  I G+A        +    ++    
Sbjct: 8   QREKELLTSVETMANIGSFWYEPASGDLYWSPQLREIHGVAQDEPITYEQAMAFHL-PEY 66

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R+N   +++            E  ++  D + HW+ I     +  NGD +   G   DIT
Sbjct: 67  RENIEHLVEQSFQN-HHSWSAESCLKDRDGRIHWIAITSITRTLKNGD-MALFGAIQDIT 124

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +K  L+ +   A       +  R +  + L  ++ +      +  +V
Sbjct: 125 VKKYRLQQLQEQANT-----L--RSTLDNLLDAVITIDNNGMIINFSV 165


>gi|28900464|ref|NP_800119.1| hypothetical protein VPA0609 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28808844|dbj|BAC61952.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 533

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 213/441 (48%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D+LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 91  ILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRI-----QSGDPFSVILFDVVNFKQ 145

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ + LK  D + R+ G+ F I+  S        +   ++ 
Sbjct: 146 VNDAMGHFCGDQLLIQIGQRLQDKLKGSDKIFRVGGDEFVILTSSACEKTG-TELIESLD 204

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    I++  ++K+A++AMYHAK  G         +
Sbjct: 205 CALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDM 264

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 265 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDF 324

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 325 IPIAERSNQVHNITMWVLGQVEKDLKTFIEKG--IKLPVHVNLSAKDLSSNLLFHRLEKL 382

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 383 LENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 442

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 443 VDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDII 502

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 503 QGYLFCPALPLNEVINWVNEH 523


>gi|325830060|ref|ZP_08163517.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325487527|gb|EGC89965.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 1263

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/570 (22%), Positives = 239/570 (41%), Gaps = 46/570 (8%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGS-----MHGPIRNWL-----PYIHINDRD 462
            S D +++ ++  D          IL    G      + G I +         IH  DRD
Sbjct: 120 SSYDELFELNLTDD-------AYKILYHEPGKFTTPPLEGRISDMFPDVRDRMIHPEDRD 172

Query: 463 NFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            F    D       +    G L+ EFR       + W  + + P+          +    
Sbjct: 173 RFHAFWDFDTLLDRIEQAGGALRGEFRKHLESGAWSWTSLTVAPVKRGGSGERVVMCFIA 232

Query: 518 DITEQKK------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           DI E+ +          I     +D LTG+ N  +F D+   ++       ++      I
Sbjct: 233 DIEEEMQRRTDQAERSQIQLLRERDQLTGLYNAATFYDKAEHLVAD---MPDIAYDAAYI 289

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILI-SENNSLK 629
           DI+ +K  N+  G   GD +L ++  RIGE+ +    +A  L G+ F ++L     +  +
Sbjct: 290 DIEHFKIYNEWHGREAGDAILRAIASRIGEIARKHGGIAGYLGGDDFTLLLPHGLIDEKR 349

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG- 688
           +        +    P +  +  I    + G  +  S  ++      +A +AM   K    
Sbjct: 350 VES------ELKKEPFDSED-TIGFQPAFGVCAIDSPDVSVVTACDHAMIAMNSVKGAYT 402

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                    ++        I  ++  A+ N E  L + P      E IVGLEAL++W HP
Sbjct: 403 KRIAWYEAEMTEEMETEAKILLEVKRALTNHEFVLHWQPQCNTRTERIVGLEALVRWQHP 462

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +    F+ + E    I +++L++ E   R I SW D+    PI + +NI+  DL  
Sbjct: 463 SRGIVMPGAFIPVLERNNFIASLDLYVWEEACRHIRSWIDRGG-VPIPVSVNISRADLYA 521

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++ E ++ L+S+       ++L  +ES    + E+    + RL+ +G ++ +DDFG+  
Sbjct: 522 IDVVEALEGLVSRYDLDHRLLELEITESAYAED-EKMADAVARLKGLGFTILMDDFGSGY 580

Query: 868 SLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L  I  D +K +   +     +++  +IL +I+ MA+ ++  IIA+    +  + 
Sbjct: 581 SSLNMLKDITVDILKIDMGFLARQDQSQRSESILEAIVSMARFMDLRIIAEGAETKEQVD 640

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L  +GCDY Q  +   P+   ++ +LL +
Sbjct: 641 FLQGIGCDYAQGYYFYRPMSTEALEQLLSQ 670



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 116/319 (36%), Gaps = 26/319 (8%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
              SD  R    + G+    W  ++   +                     + +W   +  +
Sbjct: 954  TRSDDNRLLDILKGAAVDHWYINVNT-KSFLNSADRRAWRY---WAGISLDDWSSSMLED 1009

Query: 460  ----------DRDN------FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
                      D +       F  +L  F    R     E+R+   ++   WM +  R + 
Sbjct: 1010 RLGKYTGPSQDAEAIENFLDFDDMLQRFADGERND-SLEYRL-GENDDERWMELSYRMVQ 1067

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               +G +  Y+ +  DI E+K+    +   A  D LTG+ NRQS   R+   L+ +    
Sbjct: 1068 LEEDGYVYAYLSV-TDIDERKRRELDLENKAEHDALTGLLNRQSASMRMANALERTLQL- 1125

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              R    +ID+D +K++ND  G   GD VL  + + +    +  D++ R  G+ F  +  
Sbjct: 1126 GYRGAFAIIDLDDFKQVNDRYGHLSGDTVLADVAQHLCGAFRKGDLICRWGGDEFV-VYC 1184

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +     I    + + +          R I ++ S G A      I    + + A+ A+Y
Sbjct: 1185 EDMERDDIERRLVELSEGPWNATLPDNRVIELSVSTGIAMVPQDGIAFKTVYERADRALY 1244

Query: 683  HAKHRGGNHVESFRVSSFR 701
             AK +G  H   F      
Sbjct: 1245 RAKSKGKAHFCFFEADKDS 1263



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +    +   + G  S  +          +H +D    +++            +  FR   
Sbjct: 723 LQVNNEYYHVTGCNSIDLRERQNRISRQVHPDDLPLVQSMFAEAYERPVTGAEATFRRYR 782

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            + +  WM +R   +       + +     D+TEQK+  + + 
Sbjct: 783 LNGEIMWMRMRAFFLRREQDRTIFF-ASLADVTEQKQQEDELR 824



 Score = 42.2 bits (98), Expect = 0.47,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 93/297 (31%), Gaps = 39/297 (13%)

Query: 376  VLIVILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTT---- 430
            +    L   T  +        SQ +   + E     +  S   VW +DI  DR++     
Sbjct: 805  IFFASLADVTEQKQQEDELRESQAVLELEDEVLHRIIQQSDLNVWVYDIASDRLSFQNLS 864

Query: 431  TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +  IA++L  ++                +D  N    L     + R   +   +V +   
Sbjct: 865  SNGIASLLAASADEEDTASLG-------DDVSNVLRRLSRETLWGRPAAR-TIKVWSNTG 916

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIP------- 542
            +   + I    + ++NG   R IG   D + + +  L     N   D L G         
Sbjct: 917  EPLTLHIEREIVPDANGKPARVIGYLEDPLNDSRAKLTRSDDNRLLDILKGAAVDHWYIN 976

Query: 543  -NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK--INDVLGIAVGDDVLVSLTRRI 599
             N +SF   L +    +            I +D +    + D LG   G          I
Sbjct: 977  VNTKSF---LNSADRRAWRYWAG------ISLDDWSSSMLEDRLGKYTGPS---QDAEAI 1024

Query: 600  GELLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               L F D+L R +       L     EN+  +  + +  M +            +T
Sbjct: 1025 ENFLDFDDMLQRFADGERNDSLEYRLGENDDERWMELSYRMVQLEEDGYVYAYLSVT 1081


>gi|300022463|ref|YP_003755074.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524284|gb|ADJ22753.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 660

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/470 (25%), Positives = 222/470 (47%), Gaps = 17/470 (3%)

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           ++   R        I R       ++E ++  E +   A  D LTGI NR++F+ RL  +
Sbjct: 192 IVTTGRLFLERLEAITRLQDTIAALSEAREETERV---AMTDGLTGIANRRAFMARLNAL 248

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
            + +        ++  ID+D++K +ND LG AVGD +L S++ RI  L++  D++ARL G
Sbjct: 249 NNRA---GAKSFSIFYIDLDRFKSVNDALGHAVGDALLKSVSARITGLVREGDLVARLGG 305

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I+          +  A  +  S++ P +L  +++ + A +G A    S +    +L
Sbjct: 306 DEFAIVAQDIRERAFASSLAERLVVSLSEPYDLEGQKVQIGACVGVALACESGVGGEMLL 365

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           K A+LAM+ AK  G      F     R   +  +++  L  A+ N    L Y P+  L  
Sbjct: 366 KQADLAMFAAKEAGRGMYCIFEADMQRSADEHRVLELGLRAALVNDGFELFYQPVRNLET 425

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I   E  ++W HP  G ++ ++F+  A ++ + + I  ++++   R    W  +    
Sbjct: 426 NAITSFECQVRWRHPLRGLLTPAQFLATAIDIGIAEDIGNWVIKEACRQAAHWPSE---- 481

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL--SFSESVVMGNPERSRLLLGR 850
            + + IN++S  +    +   ++  +      PSR++L    +E+ +M         L R
Sbjct: 482 -VPVGINMSSMRIGVENIAVSVERALKSAGLPPSRLELEMEVTEASLMNADAEVIASLRR 540

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKN 908
           L+ IG+S+ LDDFGT  S L YL   PF+ +K +   ++   +   +  I+RSI  +A+ 
Sbjct: 541 LKDIGVSIALDDFGTGYSSLGYLVKFPFNRIKIDRLFVSQLGQSAQSELIVRSIAELAQR 600

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  +++A+ I  +   + +  +   Y Q   + +PL  +    LL    P
Sbjct: 601 LNCSVVAEGIETDDQRRRVLALDVTYGQGMLLGAPLSASEAAVLLMSEAP 650


>gi|218554021|ref|YP_002386934.1| cAMP phosphodiesterase [Escherichia coli IAI1]
 gi|218695026|ref|YP_002402693.1| cAMP phosphodiesterase [Escherichia coli 55989]
 gi|293445891|ref|ZP_06662313.1| cAMP phosphodiesterase [Escherichia coli B088]
 gi|307314762|ref|ZP_07594357.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|218351758|emb|CAU97474.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli 55989]
 gi|218360789|emb|CAQ98356.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli IAI1]
 gi|291322721|gb|EFE62149.1| cAMP phosphodiesterase [Escherichia coli B088]
 gi|306905729|gb|EFN36256.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli W]
 gi|315060765|gb|ADT75092.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli W]
 gi|323378669|gb|ADX50937.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli KO11]
          Length = 799

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|323494552|ref|ZP_08099656.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
 gi|323311155|gb|EGA64315.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
          Length = 844

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 202/431 (46%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S   +      D+LT + +R+  ++    +       + L  T++++ I+K++ IND
Sbjct: 415 LKASFRALRSQLLYDSLTKLYSREGLIETCDAL-------NKLDGTLLLVGINKFRDIND 467

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  +GD +L +++ R+  LL     LAR+ G+ F I +  + +     + A  + +  
Sbjct: 468 SLGHGLGDQILTAISGRLKSLLINQHYLARVGGDEFAIYIPEQLDERDSKELANRIVEMF 527

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  +    I V+AS+G           +  L++  +A+ +AKH   +        +  
Sbjct: 528 ASPFVIEHESIVVSASVGVVENGPD-SNMTVWLRSGSIALSNAKHDATSISYYRSEMADI 586

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S +  +    +  A+E+ E    Y P++ L   +IVG EAL +W  P  G +   EF+ +
Sbjct: 587 SRKRTLMLAKIKDAIEHKEFLPFYQPLVDLNSGQIVGAEALARWLSPSSGLLPPIEFIPL 646

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D      +        + +N++   L   +    +Q +++
Sbjct: 647 AEESGLIGAIGEDILTQACNDTAKGIKEGKWDASFDMHVNLSVNQLSQPDFITTLQKILT 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++  +P  + L  +ES ++ N   +   L  +R +G+ + +DDFGT  S L+YL  +PFD
Sbjct: 707 QSGLNPGNLTLEITESRIVDNDSVTIQNLQAIRDLGVKIAIDDFGTGYSSLAYLHKLPFD 766

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +          +I+ +I+ M + +   I+A+ I  +  +  LT++GC   Q 
Sbjct: 767 CLKIDRAFVNSMDPNNLDTSIVAAIVNMTRGMRVNIVAEGIETDEQVHLLTQLGCPLGQG 826

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 827 FLYSRPVPYEE 837


>gi|262377124|ref|ZP_06070349.1| GGDEF family protein [Acinetobacter lwoffii SH145]
 gi|262307862|gb|EEY89000.1| GGDEF family protein [Acinetobacter lwoffii SH145]
          Length = 696

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/581 (20%), Positives = 229/581 (39%), Gaps = 12/581 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATIL 438
           +L     +  V       Q +      Q   +  S D +       +   +        +
Sbjct: 116 LLQWAVSLTDVHDYFEIQQQLSQIVSTQENMLDASADCINIISPEGEIRHSNQSGCLAQV 175

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +G        WL  +    R + +  L         R   + ++   D    +    
Sbjct: 176 SETAGQNQDRSLCWLNRLTPEARKSGQRALKQAAQGLNSRFSSKVQI--KDQPIQYWDHL 233

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + P+ +        + ++ +I++QK +   +     +D LTG+ NR +F      +L  +
Sbjct: 234 LTPILDQQNITQNILCVSRNISQQKIAETRLKEVIKRDELTGLYNRSTFYKTFKQVLLKA 293

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    +++ID+D ++ IND LG   GD +L  L +R         I+ARL G+ F 
Sbjct: 294 KQQQ-TMAGLLLIDLDYFRHINDTLGHIAGDHLLHVLGKRFQTCFGPNTIIARLGGDEFV 352

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++ +  +  ++   A      +  PIN +   I+   SIG A +    + +S +LK A+
Sbjct: 353 VLVKNLESEEQLLATAQMAYAQLDQPINYVGNSISSAMSIGCAIYPRDALNTSNLLKCAD 412

Query: 679 LAMYHAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           +A+   K+ G   +  F         +    +       +   ++   Y P +RL D  +
Sbjct: 413 IALNDLKNSGRGGIRMFNQEMCGSLENMTKQLTLA-RKIILADQIIPYYQPKVRLSDGAV 471

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G EAL++W          SE     ++  +   I+  M  ++  D+  W+ +     + 
Sbjct: 472 IGFEALLRWQDQNQNIQLPSEIFAAFQDYELASRISKTMQLKVFADMSRWQAEGLDL-LP 530

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKI 854
           I IN A  + L ++  E + A +S       +++L  +E  +  +        L  L++ 
Sbjct: 531 ISINAAPVEFLRDDYAEKLLARLSNFDVPAHKVELEITEQSLSEHGANYVVRALNLLKQA 590

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETT 912
           GI ++LDDFGT  S L+ L   P D +K + + +    S    +AI+++I  +  +I   
Sbjct: 591 GIQISLDDFGTGHSSLTRLQDYPVDCIKIDRNFVERMNSDPSALAIVKAITQIGSSIALD 650

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+ + I     +  L    C   Q  +   P+   S   LL
Sbjct: 651 ILVEGIENTEQLDTLIHCDCQIGQGFYFYRPMAGASAQALL 691



 Score = 42.6 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/122 (9%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +      +W  +  +        +   LG+           W  +IH  D   F  
Sbjct: 19  LKNLIDALPQPLWVSN-KQHLQYFNDAMTDYLGMNLNEQGH--LQWQSFIHTEDLQLFLA 75

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
              + +   +   + + R++  D+ +    +      +    +L++     D+ +  +  
Sbjct: 76  QWHAALDQHQN-FETQCRIKRNDSHYRMCSL-AVKFHHEPEHLLQWAVSLTDVHDYFEIQ 133

Query: 527 EG 528
           + 
Sbjct: 134 QQ 135


>gi|296449317|ref|ZP_06891100.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296880751|ref|ZP_06904701.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261844|gb|EFH08656.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296428246|gb|EFH14143.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 1032

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/553 (22%), Positives = 246/553 (44%), Gaps = 33/553 (5%)

Query: 420  DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNF-----RTILDSFV 472
            D +++   +  +     IL          I +++    IH +D   F        +DS  
Sbjct: 497  DTNLIT-PIYQSES--NILNFPIKENIEKIFSYIKKHLIHPDDIILFDDNLLLKSIDSPN 553

Query: 473  GYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNG---DILRYIGIANDITEQKKSLE 527
              ++G   L +E+R    D ++HW ++ I  +S+ N         +    +I    +  +
Sbjct: 554  NSKQGDLELNFEYRHLGIDEKYHWALLYILKISSKNNLGEKQTHILVAIKNIDYLMQIHK 613

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                    D LTG+ N +SF ++ + +L         R  ++++DIDK+K IND+ GI  
Sbjct: 614  NQK-----DTLTGLYNYESFCEQTSLML---KRYPGKRYAIIMMDIDKFKVINDIYGIRG 665

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD  L+ +   I + +    I  R+  + F I   S ++   I      ++ ++      
Sbjct: 666  GDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDRE-IHKVIYNIKNNLNR---- 720

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
             + E  +    G      + I  +   + A  A    K +  NH   +     +   +  
Sbjct: 721  KKFEYMLVPCFGVYKILDNHIPITSACEMAGYAHKKVKKQSINHYIFYDDTIRNDALEEK 780

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             ++ ++  A+EN + ++   P   L   +IVG EAL++W HP+ G I   +F+ + E+  
Sbjct: 781  HMEREMEYALENGQFHVYLQPKYNLNTNKIVGAEALVRWVHPEKGIIPPIKFISLFEKNG 840

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
             I  +++++ E++   I  W D     P+ I +N++   L +    E + +LI+K     
Sbjct: 841  FIIKLDMYVWEQVCSLIRKWID-LGEEPVPISVNVSRLHLHNPHFKEIVLSLINKYGIPK 899

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S ++L  +ES+ + N +    ++  LR  GI L +DDFG+  S L+ L  I  DT+K + 
Sbjct: 900  SFLELELTESLFIKNIKLFTKVIADLRMDGIVLNMDDFGSAYSSLNMLKNINIDTLKIDC 959

Query: 886  SLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                  G T++   +L+  I MAK+++  ++A+ +  +   + L  + C  IQ  +   P
Sbjct: 960  GFFNGEGITDREKIVLKHTIAMAKDLDMDVVAEGVETKEQAEFLVSLDCVVIQGYYYCKP 1019

Query: 944  LGFNSILKLLKER 956
            +  +   KLL ++
Sbjct: 1020 IPSDDFEKLLYQK 1032



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 56/317 (17%)

Query: 519 ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +TE KK      +   ++ D LT   NR  ++      +D    D      V+ IDI+  
Sbjct: 274 LTEMKKRKVENKLNYMSYYDFLTSAYNRNRYI----KYIDTFQKDKVKSIGVVFIDINGL 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD +++S++  I +       + R+ G+ F ++     +     +    
Sbjct: 330 KDINDNFGHASGDAIIMSVSVMIQKYFHSY-YVYRIGGDEFVVLCEDI-SKQLFEELVSW 387

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + +   +         +A++G + W+   I   +++K A+  MY  K R       + 
Sbjct: 388 LTEELKDNME-------CSAAVG-SIWSEDDIDIHKLIKVADERMYQDKKR------YYN 433

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH---PKWGNIS 753
               R++ + +  DL  +  N  L        R +D E+   + +I+       K    +
Sbjct: 434 KIELRNNEMKVVSDLSDSTNNISL------KCRDLDNEVYFDDLMIKGYSKAYEKLAYNT 487

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               + I  +  +I  I              ++ ++N+    I            E  E 
Sbjct: 488 YDIILSICMDTNLITPI--------------YQSESNILNFPI-----------KENIEK 522

Query: 814 MQALISKTLYSPSRIKL 830
           + + I K L  P  I L
Sbjct: 523 IFSYIKKHLIHPDDIIL 539


>gi|254506254|ref|ZP_05118397.1| FOG: EAL domain protein [Vibrio parahaemolyticus 16]
 gi|219550734|gb|EED27716.1| FOG: EAL domain protein [Vibrio parahaemolyticus 16]
          Length = 593

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 200/436 (45%), Gaps = 12/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +       + + D LT +PN  +F +     +     D+  R  V+ I ++ +K +ND L
Sbjct: 156 RQALRYRKSTYTDVLTKLPNLNAFYED----IGEVTPDNADRYAVIQIGLNNFKSVNDRL 211

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSI 641
           G   GD++L + ++++   +       RL G+ F  ++ +E      +I      +    
Sbjct: 212 GYRNGDELLQTFSQQLNSKVPSFAKFYRLGGDEFVFMVEAEKEQLKDQIHQLVEVLHNYH 271

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           +    + +    ++ S+G A    +        KNA+LA++ A+  G   V  +      
Sbjct: 272 SDLYVVSDMSHRLSFSLGVAFAKDALGNVLVWGKNADLALFKARQEGAGAVCWYDDVLLD 331

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +  I+ +L  A++     L Y P + +   E+VG EALI+W HP  G +S +EF+ 
Sbjct: 332 ETVRQHQIEAELQRALDEQHFVLHYQPKVSIGTNELVGAEALIRWMHPNLGMVSPAEFIP 391

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE    I  +  ++     R+  SW D+ +   I + IN+++     +++ + +   + 
Sbjct: 392 VAERTGKIVPLGRWVAREACREAKSWFDKGH--AIVVSINVSNVQFAHDDVFKFISDALD 449

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     + +++  +ES +M  PE       +L+++G+S+ +DDFG + S L+YL  +P D
Sbjct: 450 EHQLPANLLQIEITESTLMQQPEFVIAACEKLQELGVSIAIDDFGVEYSSLNYLKKLPID 509

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +           ++R+II M  N+   +IA+ +  E  +  L + GC   Q 
Sbjct: 510 VLKIDKSFVDDCVRLHTDHMLVRTIIQMGHNLNKRVIAEGVETEDQLALLEKEGCQEYQG 569

Query: 938 SHVASPLGFNSILKLL 953
              + PL     + L+
Sbjct: 570 YFFSRPLPAYDFVGLI 585


>gi|126434790|ref|YP_001070481.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
 gi|126234590|gb|ABN97990.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
          Length = 775

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 213/461 (46%), Gaps = 30/461 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ +  +   A +D LTG+ N   F DRL   + L A D      V+ +D++ +K +N
Sbjct: 307 ENRRLMRMVTDQALRDPLTGLANLALFNDRLAHAVQLRARDAGA-VAVLSLDLNDFKVVN 365

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG + G+++L  +  R+ + ++  D +AR+ G+ F +++    +       A  + ++
Sbjct: 366 DSLGHSAGNELLTQVADRLVKCVRAGDTVARVGGDEFAVLIEDRVDHS--LAIAHRIVEA 423

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI---TSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              P ++    + +  S+G A          +  ++ + A+ AMY AK      V  F  
Sbjct: 424 FDSPFHVEGESLLMRPSVGLAVAAPDDELEPSGEQLFRRADAAMYAAKRSRTEGVHVFSP 483

Query: 698 SSFRSDR--------------------VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
               ++                     V +  +L  A++  EL +VY P   L   E+ G
Sbjct: 484 EMTPANTEQSALLRVSDHGARGGGVSAVQLLGELRQAIDRRELDVVYQPKYHLATSELAG 543

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W HP  G ++  +F+ +     ++ A+   ++++       W       P+ + 
Sbjct: 544 VEALVRWPHPVHGTLNPGDFLPMVRRHGLMGALTDLVVDKALDHAAGWVATG--TPVPVA 601

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+ +  + D +L + + A +     +P+ + +  +E +++ + +R+  +L  LR+ G+ 
Sbjct: 602 VNLFAATMADTDLPDKIVAALESRGLAPAGLTVEITEDLILPDFKRTCAVLQELRRRGVR 661

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFG+  S LSYL  +P D VK +   +       +   ++R+++ +A+ +  T +A
Sbjct: 662 VAIDDFGSGYSALSYLRELPIDEVKLDRRFIGPIIWDPRAGEVVRAVVSLAQTLGLTTVA 721

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +      + L   GCD  Q  H + PL    +  LL+  
Sbjct: 722 EGVENAETAERLRDYGCDVAQGFHYSPPLSAPGVTALLRAE 762


>gi|315500371|ref|YP_004089174.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
 gi|315418383|gb|ADU15023.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
          Length = 657

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 213/436 (48%), Gaps = 12/436 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E+    E +   A  D LTG+ NR    D     ++    +   R  V  +D+D++K+
Sbjct: 220 VSER---TERLARLAHTDKLTGLFNRYGLFDWHQKRIE---AEPKTRTVVFFLDLDRFKQ 273

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA-DFAIAM 637
           +ND L    GD VL ++ ++I  +      LAR  G+ F +      +   +  + + A+
Sbjct: 274 VNDALSHEAGDKVLTAIAQQIESVAPPQARLARWGGDEFVLACPVTGDVHALVDEVSEAV 333

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +++ +P+N+   ++ +  SIG+A       T S+++  A+LA    K  G     +F  
Sbjct: 334 SRAVDIPLNIEGTDLKLGVSIGWACHPDHDKTFSDIVHAADLATTEVKRSGRGRTLAFDE 393

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +   S R    +   L  A+ +  LY+ Y PI+      ++  EAL +WDHP+ G I   
Sbjct: 394 TFAESLRRRFNLSRALSEAIGSDALYVAYQPIVCARTGALLSYEALCRWDHPELGTIRPD 453

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+   I A+  ++LER   D + WR Q       + +N++ K L  +     + 
Sbjct: 454 EFIRLAEDTDRIVALGNWVLERACTDAVQWRRQG--VSAKVAVNVSVKQLTLDTFALHLV 511

Query: 816 ALISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +++S+T  SP+ +++  +ESV    + E+    +  L+ +G+++ +DDFGT  S LS L 
Sbjct: 512 SILSRTGLSPTCLEVEVTESVFDDGHIEQVTQTIKHLKALGVNIHIDDFGTGYSSLSRLR 571

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           ++    +K + S +   + +   I+ S I +A+    TI+A+ +  +   + L  +G D 
Sbjct: 572 HLNVSGIKIDQSFVADLSGQSRVIIESTILIARAFGLTIVAEGVETDDQRETLRTLGVDQ 631

Query: 935 IQDSHVASPLGFNSIL 950
           +Q   +  P   + IL
Sbjct: 632 LQGYLLGRPQRLSDIL 647


>gi|330943762|gb|EGH46040.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 398

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 191/390 (48%), Gaps = 5/390 (1%)

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            + +D +K IN+      GD +L++L  R+         LARL G++F ++  +     +
Sbjct: 1   CVGLDDFKGINEQFSYQSGDQLLLALADRLRAHSVRLGALARLGGDQFALVQSNIEQPYE 60

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A+ A  +   +  P  + +++I + A+IG   +     ++ ++L+ AE  M  AK R  
Sbjct: 61  AAELAQNILDELEAPFIVGDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSR 120

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + +  S     R    +++DL  A+  ++LYLVY P I   D  IVG+EALI+W HP
Sbjct: 121 NRYQFYIASVDSEMRRRRELEKDLREALPLNQLYLVYQPQISYRDHRIVGVEALIRWQHP 180

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    F+ +AE+   I AI  ++L++  R +  W DQ     + + +N+++  L  
Sbjct: 181 EHGLVPPDVFIPLAEQNGTIIAIGEWVLDQACRQLREWLDQ-GFTDLRMAVNLSTVQLHH 239

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            EL   +  L+      P  ++L  +E+ +M +   +   L  LR+ G  + +DDFGT  
Sbjct: 240 AELPRVVNNLLQIYRLPPRSLELEVTETGLMEDINTAAQHLLSLRRSGALIAIDDFGTGY 299

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D +K + S +      +    I+R+II + K++   +IA+ +       
Sbjct: 300 SSLSYLKSLPLDKIKIDRSFVQDLIDDDDDATIVRAIIQLGKSLGMQVIAEGVETVEQEA 359

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   GC   Q    + PL    +L  LK+
Sbjct: 360 YVMTEGCHEGQGYLYSKPLPGRELLAYLKQ 389


>gi|261252814|ref|ZP_05945387.1| EAL domain protein [Vibrio orientalis CIP 102891]
 gi|260936205|gb|EEX92194.1| EAL domain protein [Vibrio orientalis CIP 102891]
          Length = 594

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 95/438 (21%), Positives = 211/438 (48%), Gaps = 10/438 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+        +  D LT +PN  ++ +     ++     +     ++ I +  +K +ND 
Sbjct: 153 KQQAVEFKAKSQTDYLTKLPNMNAYKE----AIEQVNKSNAFHFGLIHIGLVGFKNVNDR 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GDD+LV+  + I +++     + RL G+ F +++ SE  + K+ D    + K+  
Sbjct: 209 LGYRHGDDLLVAFAQHIRDVIGTEGTVYRLGGDEFLVLVESEELTEKLEDLVFRLNKNQR 268

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
           +  ++ +    ++  +G A    +  ++    KNA+ A++ A+    N+V  F       
Sbjct: 269 VMYSVDDTSHRLSFCMGIALAEDASGSNEVWEKNADFALFKARSEHENNVCWFNDELLGE 328

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ ++  A+++ +  L++ P + +   +++G EAL++W+HP+ G +   EF+ +
Sbjct: 329 TIRQHQIETEIKSALKSEQFVLMFQPKVSVDSAQVMGAEALLRWNHPQLGMVPPIEFIPV 388

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  +  +++    R    + D     P+ I +N+++      +L + +   + +
Sbjct: 389 AEKTTQIVPVGYWIIYEACRQAKMFNDAG--TPVCIAVNVSTVQFAHADLFDVVVKALKE 446

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +ES +M +PE    +  +LR IG+S+ +DDFG + S L YL  +P D 
Sbjct: 447 IKLPSHLLQLEITESTLMSDPESITDICRQLRAIGVSIAIDDFGVEYSSLKYLKQLPVDI 506

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +    ++     ++R+II M  ++   ++A+ +  +  +  L +  CD  Q  
Sbjct: 507 IKIDKCFVDECATSHSDRILIRTIIQMGHSLGIKLVAEGVEAQEQLDVLAQEQCDQYQGY 566

Query: 939 HVASPLGFNSILKLLKER 956
             + PL  +    +LK++
Sbjct: 567 LFSQPLSRDEFFSMLKQQ 584


>gi|71281352|ref|YP_271567.1| sensory box protein [Colwellia psychrerythraea 34H]
 gi|71147092|gb|AAZ27565.1| sensory box/GGDEF/EAL domain protein [Colwellia psychrerythraea
           34H]
          Length = 868

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/576 (21%), Positives = 241/576 (41%), Gaps = 31/576 (5%)

Query: 390 VLATGYFSQGIFSDG----ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                   + +        E     V    D +         ++    +    G     +
Sbjct: 288 AFEDITEQKQLLDSERSTSEDLKTIVDNLNDSIVTISSKGIILSANRMVEKTFGYLQQEL 347

Query: 446 HGPIRNWLPYIHI----NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            G     +  +      +  D +          +   +  E      D     M + I  
Sbjct: 348 IGQN---VSILMPKPFVSQHDKYMQNYLKTGHAKIIGVGRELPAMKKDGTSFPMELSISE 404

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + + N  +  +IGI  DITE+KK+ + I   A+ D  TG+ NR S    L    D S   
Sbjct: 405 VLHGNDKV--FIGIVRDITERKKAEKDIHQLAYFDETTGVMNRYSLERDLKKCFDKSLLL 462

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +      M+I++DK+ ++N + G   GD +L     R+ E L    +  R S + F +++
Sbjct: 463 NENITA-MLINLDKFSQVNLIYGDDTGDVILKETATRLNERLPSWVVTYRSSADSFYVLI 521

Query: 622 ISEN----NSLKI---ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
                   +  +I    D A  + K I   I + +  I V ASIG  +  +  I   ++ 
Sbjct: 522 NPSAAVGLDDARIMTNEDLAEKILKEIHQAITINQHVINVQASIGILNIPAKDIDYIDIK 581

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS----ELYLVYHPIIRL 730
              ELA+++AK++GG++      S+  +  +    +L LA++++    EL +V  P    
Sbjct: 582 PLLELAVFNAKNKGGDNYVF--ASNNDTCSLKRHSELSLAMKSNLFIRELNIVLQPQYST 639

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              +IVG EAL++W     G IS  EF+ +AE+   I  +  +++++    +   R   +
Sbjct: 640 Q-GKIVGSEALVRWQSASLGGISPVEFIPLAEKNGAIIELGNWIIDKTCSLLAQ-RRVFS 697

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I +NI++K +      + +   +       S + L  +ES ++ + +     +  
Sbjct: 698 KETSPISVNISAKQIAQPNFVDNLLTSLDNYQVPYSELVLELTESALVTDLKLVVSKMEL 757

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L+  GI  ++DDFGT  S L+Y+ ++P   +K +   +         + I+ +I+ MAK+
Sbjct: 758 LKSKGILCSIDDFGTGYSSLNYIHHLPIIELKIDKCFVDDIKNETDDVPIINTILQMAKS 817

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           ++  ++A+ +  +  +  L   GCD IQ  + + PL
Sbjct: 818 LKLRVVAEGVESKAQLNYLADHGCDVIQGYYFSKPL 853



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 2/156 (1%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
               +++  F      L        +    +  S     +    WD++I   +   T + 
Sbjct: 150 FASRILVQLFERALLALDNSVAETKLQHQYQLMSEIEKLAKIGGWDYEISTGKTHWTEET 209

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             I GL+       +     +     +   + + +  V       Q E     A     W
Sbjct: 210 YRIYGLSLDE-EITLEQAAKFYSPEVQKTIKDVFELAVNQLI-PYQVELPFIDAQGNHKW 267

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +    +  SN+ G      G   DITEQK+ L+   
Sbjct: 268 VKTTGQIRSNAQGIATHVYGAFEDITEQKQLLDSER 303


>gi|255099629|ref|ZP_05328606.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 1032

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/573 (21%), Positives = 249/573 (43%), Gaps = 36/573 (6%)

Query: 403  DGERQSLAVLGSGDIV---WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIH 457
                + LA      I+    D +++   +  +     I             +++    IH
Sbjct: 477  SKAYEKLAYNTYDIILSICIDTNLIT-PIYQSES--NIFSFPIKENLEKTFSYIKKYLIH 533

Query: 458  INDRDNF-----RTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNG--- 507
             +D   F        LDS    ++    L +E+R    D +++W +I +  +S+ N    
Sbjct: 534  PDDIILFNDNHLLKSLDSLNNSKQDDLELNFEYRRLGIDKKYYWALIYMLKISSKNKLGE 593

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                 +    +I    +  +        D LTG+ N +SF ++++ +L       + R  
Sbjct: 594  KQTHILVAIKNIDYLMQLHKNQK-----DTLTGLYNYESFCEQISLML---KRYPDKRYA 645

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++++DIDK+K IND+ G+  GD  L+ +   I + +    I  R+  + F I   S ++ 
Sbjct: 646  IIMMDIDKFKVINDIYGVRGGDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDR 705

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              I      ++ S+       + E  +    G      + I  +   + A  A    K +
Sbjct: 706  D-IHKVIYKIKNSLNR----KKFEYMLVPCFGVYRILDNHIPITNACEMAGYAHKKVKKQ 760

Query: 688  GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              N+   +     +   +   ++ ++  A+EN + ++   P   L   +IVG EAL++W 
Sbjct: 761  SINNYIFYDDTIRNDALEEKQMEREMEYALENGQFHVYLQPKYNLNANKIVGAEALVRWV 820

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G I   +F+ + E+   I  +++++ E++   I  W D     P+ I +N++   L
Sbjct: 821  HPEKGIIPPIKFISLFEKNGFIIRLDMYVWEQVCSLIRKWID-LGEEPVPISVNVSRLHL 879

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +    E + +LI+K     S ++L  +ES+ + N +    ++  LR  GI L +DDFG+
Sbjct: 880  HNPHFKEIVLSLINKYSIPKSFLELELTESLFIKNIKLFTKIIADLRMDGIVLNMDDFGS 939

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S L+ L  I  DT+K +       G T++   +L+  I MAK+++  ++A+ +  +  
Sbjct: 940  AYSSLNMLKNINIDTLKIDCGFFNEEGITDREKIVLKHTIAMAKDLDMDVVAEGVETKEQ 999

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + L  + C  IQ  +   P+      KLL ++
Sbjct: 1000 AEFLVSLDCVVIQGYYYCKPIPSADFEKLLYQK 1032



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 519 ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +TE KK      +   ++ D LTG  NR  ++  +                V+ +DI+  
Sbjct: 274 LTEMKKRKVENKLNYMSYYDFLTGAYNRNKYIKYIDNF----QKGKVKSIGVVFVDINGL 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD  +VS    I +     + + R+ G+ F ++    +           
Sbjct: 330 KDINDNFGHANGDSAIVSACVIIKKYFHSYN-VYRIGGDEFVVLCEDIS-----KQLFEE 383

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   ++        E+  + ++G + W+   I   +++K A+  MY  K R       + 
Sbjct: 384 LVSWLSEEFK---DEMIYSVAVG-SIWSDDNIDIHKLIKVADERMYQDKKR------YYN 433

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +  R++ + +  DL  +  N           +   D  I G        + K    +  
Sbjct: 434 KNKLRNNEMKVISDLADSTNNILFKHKELVDKVYFDDLMIKGYSK----AYEKLAYNTYD 489

Query: 756 EFMLIAEELCMIKAI 770
             + I  +  +I  I
Sbjct: 490 IILSICIDTNLITPI 504


>gi|37678254|ref|NP_932863.1| sensory box/GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37196993|dbj|BAC92834.1| sensory box/GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 1048

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/583 (20%), Positives = 222/583 (38%), Gaps = 19/583 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +     + ++               ++   D              +LG    
Sbjct: 470  LFEARDITSRKLMEEKLYKRESNLRNYYEQQPVMMVTLDKNNRIQQVNRFAQQLLGYQPL 529

Query: 444  SMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             M G +          D      R +L       +G  + E   R  D    W+   IRP
Sbjct: 530  EMLGHLLQEFYC----DAQAMTPRQMLLQPTPALQGVWRREIEYRHQDGSAVWIRENIRP 585

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++  +G IL  +G   DI+  K+    +   A  D LT   NR  F   L   L    + 
Sbjct: 586  LT-ESGQIL-IVG--EDISHNKQLARQLEYQAKYDLLTDTFNRNQFDIELKRALREVESH 641

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              +   ++ ID+D+ K +ND  G   GD  +      + E+L    ILARL G+ F ++L
Sbjct: 642  RRVH-AMLYIDLDQLKVLNDTAGHDAGDGAIQFCASMLEEVLPHTAILARLGGDEFAVLL 700

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               N    I      +    + P    + +I +T SIG      +  +   +   A+ A 
Sbjct: 701  KDSNEHTAIGVAKTIIATLSSQPFIWEKVQINLTCSIGIRMIDHTAESPQMVHAQADTAC 760

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIV 736
            + AK +G N  + F + S    R   + +    +  A+ N  L L    II    + + +
Sbjct: 761  HAAKEQGRNRFKLFSLDSEELQRRQQEMESVNLVHDALANDRLELFAQRIIPLSKECDKM 820

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              E L +    +   +S + FM  +E   +   I+  ++ +    + +  D  +      
Sbjct: 821  HFEILTRIRDKQGEYLSPAIFMPASERYNIAHLIDEQVVTKTLDWLEAHPDALHQLG-RC 879

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             IN++   + + E    +   ++ ++    ++ L  +E+  M N   +     +++ +G 
Sbjct: 880  SINLSGHSMGNPEFMAFLLDRLTNSVIPCHKLCLEITETAAMKNVALAMDFFAQVKALGC 939

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             + LDDFG+  S   YL  +P D VK +G  +      E    ++R+I  +A+ +    +
Sbjct: 940  LIALDDFGSGLSSFGYLKQLPVDVVKIDGIFVQDMHRNESDHIMVRAINELAQQMGKQTV 999

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            A+ +     I  LT +G DY Q   +  P     ++   ++ F
Sbjct: 1000 AEFVENSEIIALLTELGVDYAQGYVIGYPTPLAELVAQWQDEF 1042


>gi|324119397|gb|EGC13283.1| EAL domain-containing protein [Escherichia coli E1167]
          Length = 807

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 51.1 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  YNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|315619587|gb|EFV00113.1| putative enzyme [Escherichia coli 3431]
          Length = 807

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|237800731|ref|ZP_04589192.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023589|gb|EGI03646.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 959

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 220/447 (49%), Gaps = 12/447 (2%)

Query: 510 LRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           LR      D T E  ++   +      D+LTG+PNR     RL             + +V
Sbjct: 509 LRLEARVRDRTRELDQANARLQYENAHDSLTGLPNRSHLQYRLKQAWQEFCLSGQ-QLSV 567

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M ID+D++K IND LG   GD +L+    R+   ++  D+LARL G+ F ++ I      
Sbjct: 568 MFIDLDRFKMINDSLGHHCGDILLIQAAERLRSCMREGDLLARLGGDEFAVLSIDAPLQT 627

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHR 687
            I D A  +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ 
Sbjct: 628 GI-DIAQRILSAFEQPFVIDDHTVFSSCSIGVVGADSQFHQEPADLLRDADTAMYRVKNG 686

Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G +    F  +  R     ++++  L  A++   +L   + PI+ +   ++  LEALI+W
Sbjct: 687 GRDSFAVFNQALRREVLDQVEQEGALRTALKCTDQLIPYFQPIVCVKTGQLRALEALIRW 746

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    I+   F+   E L +I  ++L+ML+++   +    + ++ PP  + +N +S  
Sbjct: 747 RTPDGQIIAPESFLPALEGLRLIGRLDLYMLKQVITILAQ-PENSHWPP--VHVNCSSYS 803

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        + A++++   +P R+ L  +E  ++ +P+++RL +  L + G+S+ LDDFG
Sbjct: 804 ITRPTFSAEVLAMLAEHGVAPRRLCLELTEGALVADPDQARLSMKLLAEQGMSVMLDDFG 863

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S LSY+    F  +K + S + G   + +  AI+R+I+ MA++++  ++A+ +    
Sbjct: 864 AGFSSLSYVHQYHFSGLKIDKSFIFGLVSSVRSRAIVRAIVRMAESLDLAVVAEGVEDLE 923

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
            ++ L  +G    Q  + ++P+    +
Sbjct: 924 TLELLREIGAAQAQGYYFSAPMPIGQL 950


>gi|108799182|ref|YP_639379.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119868297|ref|YP_938249.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|108769601|gb|ABG08323.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119694386|gb|ABL91459.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
          Length = 775

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 213/461 (46%), Gaps = 30/461 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ +  +   A +D LTG+ N   F DRL   + L A D      V+ +D++ +K +N
Sbjct: 307 ENRRLMRMVTDQALRDPLTGLANLALFNDRLAHAVQLRARDAGA-VAVLSLDLNDFKVVN 365

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG + G+++L  +  R+ + ++  D +AR+ G+ F +++    +       A  + ++
Sbjct: 366 DSLGHSAGNELLTQVADRLVKCVRAGDTVARVGGDEFAVLIEDRVDHS--LAIAHRIMEA 423

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI---TSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              P ++    + +  S+G A          +  ++ + A+ AMY AK      V  F  
Sbjct: 424 FDSPFHVEGESLLMRPSVGLAVAAPDDELEPSGEQLFRRADAAMYAAKRSRTEGVHVFSP 483

Query: 698 SSFRSDR--------------------VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
               ++                     V +  +L  A++  EL +VY P   L   E+ G
Sbjct: 484 EMTPANTEQSALLRVSDHGARGGGVSAVQLLGELRQAIDRRELDVVYQPKYHLATSELAG 543

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W HP  G ++  +F+ +     ++ A+   ++++       W       P+ + 
Sbjct: 544 VEALVRWPHPVHGTLNPGDFLPMVRRHGLMGALTDLVVDKALDHAAGWVATG--TPVPVA 601

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+ +  + D +L + + A +     +P+ + +  +E +++ + +R+  +L  LR+ G+ 
Sbjct: 602 VNLFAATMADTDLPDKIVAALESRGLAPAGLTVEITEDLILPDFKRTCAVLQELRRRGVR 661

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFG+  S LSYL  +P D VK +   +       +   ++R+++ +A+ +  T +A
Sbjct: 662 VAIDDFGSGYSALSYLRELPIDEVKLDRRFIGPIIWDPRAGEVVRAVVSLAQTLGLTTVA 721

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +      + L   GCD  Q  H + PL    +  LL+  
Sbjct: 722 EGVENAETAERLRDYGCDVAQGFHYSPPLSAPGVTALLRAE 762


>gi|330960912|gb|EGH61172.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 964

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 510 LRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           LR      D T E  ++   +      D+LTG+PNR     RL          D  +  V
Sbjct: 511 LRLEARVRDRTRELDQANARLQYENSHDSLTGLPNRSQLQQRLKQAWQDFCVQDR-QLVV 569

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M ID+D++K IND LG   GD +LV    R+   ++  D+LARL G+ F ++ I+     
Sbjct: 570 MFIDLDRFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFAVLGINAALQT 629

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHR 687
            + D A  +  +   P  + +  +  + SIG            +++L++A+ AMY  K+ 
Sbjct: 630 GV-DIAQRILTAFEQPFVIDDHTVFSSCSIGVVGADRQFHQEPADLLRDADTAMYRVKNG 688

Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G +    F  +  R     ++++  L  A++   +L   + P+I     E++ LEALI+W
Sbjct: 689 GRDSFAVFNQALRREVLDQVEQEGALRTALKCTDQLIPYFQPVICTATGELLALEALIRW 748

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    I+   F+   E L +I  ++L+ML+++   +   + +    P  + +N +S  
Sbjct: 749 RQPDGRIIAPESFLPALEGLRLIGRLDLYMLKQVITILA--QPENGDWP-PVHVNCSSYS 805

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        + A++++   +P R+ L  +E  ++ +PE++RL + +L   G+S+ LDDFG
Sbjct: 806 ITRPAFAAEVLAMLAEQGVAPGRLCLELTEGALVADPEQARLSMKQLADQGMSVMLDDFG 865

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S LSY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +    
Sbjct: 866 AGFSSLSYVHQYHFSGLKIDKSFILGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDLE 925

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
            ++ L  +G    Q  + ++P+    +
Sbjct: 926 TLELLREIGAGQAQGYYFSAPVPIEQL 952


>gi|191165072|ref|ZP_03026916.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli B7A]
 gi|193064251|ref|ZP_03045334.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli E22]
 gi|194425780|ref|ZP_03058336.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli B171]
 gi|209918770|ref|YP_002292854.1| cAMP phosphodiesterase [Escherichia coli SE11]
 gi|256018294|ref|ZP_05432159.1| cAMP phosphodiesterase [Shigella sp. D9]
 gi|300819784|ref|ZP_07099972.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300824487|ref|ZP_07104599.1| PAS domain S-box [Escherichia coli MS 119-7]
 gi|309796149|ref|ZP_07690560.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|331677369|ref|ZP_08378044.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli H591]
 gi|332279340|ref|ZP_08391753.1| heme-regulated cyclic AMP phosphodiesterase [Shigella sp. D9]
 gi|190904844|gb|EDV64549.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli B7A]
 gi|192929099|gb|EDV82710.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli E22]
 gi|194415835|gb|EDX32101.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli B171]
 gi|209912029|dbj|BAG77103.1| oxygen sensing protein [Escherichia coli SE11]
 gi|300523042|gb|EFK44111.1| PAS domain S-box [Escherichia coli MS 119-7]
 gi|300527665|gb|EFK48727.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|308120210|gb|EFO57472.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|320201771|gb|EFW76347.1| Heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           EC4100B]
 gi|323160593|gb|EFZ46534.1| putative enzyme [Escherichia coli E128010]
 gi|323186000|gb|EFZ71357.1| putative enzyme [Escherichia coli 1357]
 gi|324021085|gb|EGB90304.1| PAS domain S-box [Escherichia coli MS 117-3]
 gi|331073829|gb|EGI45149.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli H591]
 gi|332101692|gb|EGJ05038.1| heme-regulated cyclic AMP phosphodiesterase [Shigella sp. D9]
          Length = 807

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|296156369|ref|ZP_06839207.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295892968|gb|EFG72748.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 485

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/424 (26%), Positives = 193/424 (45%), Gaps = 9/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT + NR    + L  +L         R  V+ +++D   +IND+ G  +GD VL   
Sbjct: 52  DSLTRLHNRVYIAECLQQLLKSPRA---ARIAVLSVNLDGVGRINDIGGYDLGDSVLRDA 108

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L+    +L R+ G  F I++    N L    FA  +      P  +   E  V+
Sbjct: 109 ASRLAGLIGQHGLLGRIGGEGFIIVVDDHGNPLAPGAFARRIFDLFTAPFEVAGAEYYVS 168

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCL 713
            SIG A        +S ++++A  AM HAK  G    + F   +      R  I+  L  
Sbjct: 169 VSIGIALSVHEPRDASALIRDAGSAMRHAKQYGRGRAQFFTKDMQCQLQRRFRIEALLRH 228

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A    EL LVY PI+     E VG EAL++W + + G+++ +EF+ +AEE  ++++I  +
Sbjct: 229 ARAAGELKLVYQPIVDSASGETVGAEALLRWSNSELGDVAPAEFIPVAEEGGLMESIGDW 288

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +LE+       WR     P + + +NI+     +  L   + A + ++    S ++L  +
Sbjct: 289 VLEQACAQAGQWRWSFA-PHVAVSVNISPLQF-NEHLVRHVAACLERSGLDASALQLEIT 346

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E V+M +       +  L ++G+ L++DDFGT  + LSYL       +K + S + G   
Sbjct: 347 ERVLMPDDPAVSATVTALAELGVKLSIDDFGTGYASLSYLKRFALHNLKIDRSFIQGLPH 406

Query: 894 KRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            R   AI  +++ MA  +  T  A+ +        L  MGCD +Q    + P        
Sbjct: 407 DRESVAITHAVVTMAHALGMTATAEGVETREQATVLFEMGCDMLQGHLFSHPASPADFAD 466

Query: 952 LLKE 955
            L +
Sbjct: 467 ALSD 470


>gi|83718429|ref|YP_443383.1| EAL domain-containing protein [Burkholderia thailandensis E264]
 gi|83652254|gb|ABC36317.1| EAL domain protein [Burkholderia thailandensis E264]
          Length = 580

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/558 (21%), Positives = 242/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 23  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRDLIPEQD----TATLDGLL 76

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 77  ARASETGDIEKATLCLVKSLTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTY 136

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +
Sbjct: 137 ELHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDAL 195

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 196 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRIAAIDAAEALARQLQTAVQRPYAYD 255

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS+G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 256 GQAVHLSASVGIAIYPDARAASKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 315

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI +     +VG+EALI+W HP  G ++ + F+ +
Sbjct: 316 DAERLKLEADLYNGVRNGEFSLHFQPITKSHSGAVVGVEALIRWHHPVHGLVAPATFIPL 375

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 376 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 434

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 435 TGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 494

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 495 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 554

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + +
Sbjct: 555 LVCQALPSDELAQRFEAQ 572


>gi|167836102|ref|ZP_02462985.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis MSMB43]
          Length = 611

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/558 (21%), Positives = 241/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRDLIPEQD----TAALDGLL 107

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 108 ARASATGDVEKATLCLVKSLTYPLDVEVRAVKSRHHGVDGFAIAAFDVSSWRAIEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L     ++         ++++D+D Y++IN  LG   GD +
Sbjct: 168 ELHHDPMTGLDNLSALLPALMRAQKMADEGGGCT-ALLLLDLDDYQRINRALGYDAGDAL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 227 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRIAAIDAAEALARQLQTAVQQPYAYD 286

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS+G A               S +L+ A+ A+  AK  GGN            
Sbjct: 287 GQAVHLSASVGIAIDPDARTASKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI +     +VG+EALI+W HP  G ++ + F+ +
Sbjct: 347 DAERLKLEADLYNGVRNGEFSLHFQPITKSHTGAVVGVEALIRWHHPVHGLVAPATFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 407 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + +
Sbjct: 586 LVCQALPSDELAQRFEAQ 603


>gi|294678817|ref|YP_003579432.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
            1003]
 gi|294477637|gb|ADE87025.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Rhodobacter capsulatus SB 1003]
          Length = 1284

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/602 (20%), Positives = 245/602 (40%), Gaps = 34/602 (5%)

Query: 387  IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDIATILGLAS 442
            I+        ++ +    ER +     +   ++++    D        +P +  +LG+  
Sbjct: 692  IEAKRREEQAAREMHQAHERLASIASIAPVGLYEFRRFPDGSASFPYASPYLEDLLGIEF 751

Query: 443  GSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            G     I   +    +  ++  +F T                FRVR       W+     
Sbjct: 752  GLFSQAIAVEDLFANVQFDELPDFLTG-QGAGPGMLDLWNQRFRVRHPRRGDIWLANSAT 810

Query: 501  PMSNSNGDILRYIGIANDIT-------EQKKSL-------EGILCNAFQDNLTGIPNRQS 546
                 +G ++ + G  +D+T       E +++              A  D LTG+PNR+S
Sbjct: 811  SKPQPDGSVV-WTGALHDVTADVAREAELRRAHRLAEEMRAENERQALHDGLTGLPNRRS 869

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            + + L   +  +A        ++ +D+D +K +ND LG   GD VL  +   +   L+  
Sbjct: 870  YDNVLARRIADAAAAGPRDCLLIRVDLDHFKHVNDTLGHEAGDMVLQRVADVLRAELRGG 929

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            D  AR+ G+ F IIL    +     +    M+  +A P+    R+    AS G A     
Sbjct: 930  DFAARIGGDEFSIILAPGQSGGHAREVVERMQARLAEPLWFDGRQCRFGASFGIAETEDI 989

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVY 724
                +E+   A+ A+Y AK  G N +E F     ++      +  ++   ++  E    +
Sbjct: 990  AAMGTEIQLFADAALYRAKEGGRNRMEFFTPELHQNILFDRKLAGEIQEGLDRGEFVPFF 1049

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
               I      + G+E L++W HP+ G +    FM +A +L ++  I+  M+E+ A  + S
Sbjct: 1050 QSQICARTGRLTGVETLLRWRHPERGLLVPDAFMHVAVQLRLVSEIDRVMMEKSAAALTS 1109

Query: 785  WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            WR +  + P  I  N++S  + D ++    +A+        +++     ES+++      
Sbjct: 1110 WRARGLIVP-KISFNVSSGRMHDPDVVRAARAIAEGE----TKVTFELLESILVEEESEV 1164

Query: 845  RLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRS 901
                L  LR  GI + +DDFG+  + +  L  I    +K +  ++       +   ++R+
Sbjct: 1165 FRFHLDALRDAGIEIEIDDFGSGHASIIGLMQIAPSALKIDQRIVAPVARDPRSKNLVRA 1224

Query: 902  IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            I+ +A+ +    +A+ +      + L  +GCD +Q    + P      +++  +   +V+
Sbjct: 1225 IVEIAETLGIATVAEGVETWAQAEILRDLGCDVLQGYLFSMPQSAEDFMRICTQE--VVR 1282

Query: 962  NT 963
              
Sbjct: 1283 RA 1284



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 2/129 (1%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A++     VW             +    LG A G        W    H +D +     + 
Sbjct: 158 ALICGETGVWSICAELGEAWMPDECYRQLGYAPGDFIPDEIGWRSLFHPDDLEAAMARMQ 217

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEG 528
             +  R      + R+R  D   HW     R +  +  G      G    I E K ++E 
Sbjct: 218 DLICDRTTVFTADHRLRHKDGSHHWYRTVARKIDRSDRGLPFIVSGGFTRIDEAK-AIER 276

Query: 529 ILCNAFQDN 537
            L  A  D 
Sbjct: 277 RLSEALADA 285



 Score = 74.6 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 6/152 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW--DIVRDR--VTTTPDIATILGLAS 442
           ++        ++ +    +R       +   +++W  D          +  +  +LGL+ 
Sbjct: 554 MRMTREAERSAEAVRRAHDRMVTMAENAPGAIFEWQRDSSGHFSFAFFSAALPELLGLSG 613

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            ++          I   D  + +  +   V     R +   R+        W+ +   P 
Sbjct: 614 EALKADGAAVFTRILPEDIPSVQAAVTHSVETLT-RFEILHRIGHPQRGLRWLHVSASPF 672

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
              NG I+ Y G A D+TEQ ++       A 
Sbjct: 673 LQDNGTIVWY-GNAMDVTEQIEAKRREEQAAR 703



 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 4/146 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGS---GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A     +      ER  L    +   G   +       +  T  +   + G A G+    
Sbjct: 281 ALADAQKSRAKAEERGELLRTSALCAGIGSFSVCPDLGQGWTPDETYRLFGHAPGAFAST 340

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNG 507
              W   IH  D  +  T ++           +E R R AD  +HW     R +  +  G
Sbjct: 341 DAGWRSQIHPEDLASAVTEMEKLKSGASDLYVHEHRCRHADGSYHWYRAIARRVDRSDKG 400

Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533
                 G+   I + +++   +   A
Sbjct: 401 LPYLLAGVIICIDQSRENERRLAEAA 426



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 53/167 (31%), Gaps = 11/167 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW----DIVRDRVTTTPDI 434
           VI+      ++       +       +R       +   ++++    D   D    +  +
Sbjct: 408 VIICIDQSRENERRLAEAADRAQQARDRLDTLADNAPGALFEYRRNADGSIDMPYFSAKL 467

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             ++G+A  ++     N   ++  +        ++          ++   V   D    W
Sbjct: 468 PMMVGVAPEAIVADGVNVFTHMPQDMMPGIFGWIEESRAQ-GTPFEHRLPVDHPDRGRIW 526

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-----QD 536
           + +   P +  +G  L + G   DITEQ +       +A       D
Sbjct: 527 LTVSALPCNQPDGATL-WFGNVFDITEQMRMTREAERSAEAVRRAHD 572


>gi|167582431|ref|ZP_02375305.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis TXDOH]
 gi|167620523|ref|ZP_02389154.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis Bt4]
 gi|257139632|ref|ZP_05587894.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia thailandensis E264]
          Length = 611

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/558 (21%), Positives = 242/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRDLIPEQD----TATLDGLL 107

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 108 ARASETGDIEKATLCLVKSLTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +
Sbjct: 168 ELHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDAL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 227 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRIAAIDAAEALARQLQTAVQRPYAYD 286

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS+G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 287 GQAVHLSASVGIAIYPDARAASKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI +     +VG+EALI+W HP  G ++ + F+ +
Sbjct: 347 DAERLKLEADLYNGVRNGEFSLHFQPITKSHSGAVVGVEALIRWHHPVHGLVAPATFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 407 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + +
Sbjct: 586 LVCQALPSDELAQRFEAQ 603


>gi|172087637|ref|YP_203474.2| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|171902233|gb|AAW84586.2| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 821

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 208/436 (47%), Gaps = 13/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+S + +      D+LT + +R    + ++  +  ++        ++   I+ ++ IND
Sbjct: 385 LKRSFQELQDKVTYDSLTHLYSRTGLDNVISPAITDNS-------GLISFTINGFRDIND 437

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            +G   GD +LV ++ R+    +  +I +AR+ G  F +     ++  ++ ++A  ++  
Sbjct: 438 SVGHLSGDHLLVDISERLKTHYQDQNIEMARIGGAEFALFFYHIDDIQELINYAQQLQSI 497

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSS 699
              PI     E+ +  S G   +  +   +   L+ A LA+ +A+       V    ++ 
Sbjct: 498 FNTPIQSASGEVVIQLSTGLV-YQLNNHNAMHWLRCASLALAYAQSKSSKLAVFEPYMAD 556

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +  +  +L  A++N EL   Y P++   D +I G EALI+W+ P+ G +S +EF+ 
Sbjct: 557 ISQKKTKLAAELSHAIKNEELLPYYQPLVNFEDGKIHGAEALIRWNSPQRGIVSPNEFIP 616

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALI 818
           +AE+  MI  I   +L +   D          P  F+  +N++++ L D    + +QA +
Sbjct: 617 LAEDNGMIINIGRMVLRQACIDTAQKIASGEWPDDFVMHVNVSTEQLHDGNSYQRLQAAL 676

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++   P  + L   ES ++ N      LL ++R +G+ + +DDFGT  S LSYL  +PF
Sbjct: 677 TESGLEPKNLSLEIIESRLLNNDAFIIELLNKVRALGVHIAIDDFGTGYSSLSYLHTLPF 736

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   T      +I+ +II MAK    +I+ + +  +   + L  +GCD  Q
Sbjct: 737 DCLKIDRSFVKNLTRDNAETSIVNAIIHMAKGFNVSIVVEGVETKEQAEILDSLGCDIAQ 796

Query: 937 DSHVASPLGFNSILKL 952
               + PL      +L
Sbjct: 797 GYLYSKPLPIEQWGEL 812


>gi|254501671|ref|ZP_05113822.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437742|gb|EEE44421.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 699

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 217/466 (46%), Gaps = 18/466 (3%)

Query: 504 NSNGDILRY-IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           ++ G++    +   + +  Q+ ++  I   A+ D +TG+ NR        T++D      
Sbjct: 225 DAPGEVGDLQVAFRHMLQTQRSNIVEIERLAYTDMITGLANRAKLDKLAATMID---QKP 281

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI--------LARLSG 614
           +    V+ +  D++K IND+ G  VGD+V+  L  R+G LL             LAR SG
Sbjct: 282 DAEGAVLYVGFDRFKLINDMHGHRVGDEVMRQLAARLGRLLDKVAHPHTKNAPALARFSG 341

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F  IL    +  ++ + +  + + ++ P+ +    ++V+AS GF ++      + E++
Sbjct: 342 DEFVAILPGLADPDQLTEVSETVLRLLSRPVQIGSMSLSVSASAGFVTYPEQGADAEEVM 401

Query: 675 KNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           KNA LAMY AK   RG     S  + +  ++R +I + L  AV+   L + Y P +   +
Sbjct: 402 KNANLAMYEAKSASRGRAVSYSEALRTQANERELIADRLRHAVDTGGLEVFYQPKVIPEN 461

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG EAL++W+    G +S ++F+ IAEE  +I  I  F+L+R   D     ++    
Sbjct: 462 GRIVGSEALLRWNDEVLGQVSPAKFIPIAEERGLIAPIGRFVLQRALNDTKHLHEEGLHT 521

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++     +    +     +S++  S  +++L  +ES +M   +     +  +R
Sbjct: 522 S--VAVNVSPAQFQEETFIDETIGTVSESGVSTEKVELEITESSLMDYSDTVLDRIRPIR 579

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE 910
           + G+   +DDFGT  S LS L  +PFDT+K + S +        R  I+  I  MA  + 
Sbjct: 580 EKGVKFAIDDFGTGYSCLSSLANMPFDTLKIDRSFIMDIATCADRRTIVELIFIMAHQLN 639

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +A+ I   +    L   G    Q    +  + F     ++  +
Sbjct: 640 LNTVAEGIETPLQKDYLKLWGGTLGQGFLWSPAVAFPEYRAMILAQ 685


>gi|89091937|ref|ZP_01164892.1| two-component response regulator [Oceanospirillum sp. MED92]
 gi|89083672|gb|EAR62889.1| two-component response regulator [Oceanospirillum sp. MED92]
          Length = 709

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/437 (24%), Positives = 202/437 (46%), Gaps = 5/437 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   E +      D +T + NR++  + L   +  +          + I +D  + +  
Sbjct: 268 LRYMQEHVQFLENFDPVTRLYNRRAMGEALEREVIRNFESQE-HVYFLFIRLDLLRNLTI 326

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+    R+ + L     L RLS   FG+++I + + + +      +  ++
Sbjct: 327 ELGDEQRDQILIETANRLRQRLSVNHSLGRLSEGCFGLMIIDKPDDVDLDSLTTELLHTL 386

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
             PI L   +I + A IG  S+        E++  AE+A   AK    G    +    + 
Sbjct: 387 EQPIQLDSIQIQIAARIGITSFPEDGDQQFELIGRAEIAAKTAKKREQGWLYFNQIRDTQ 446

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              ++ + +DL +A+E  + YLV+ P+  L     +  E L++W HP+ G IS + F+ +
Sbjct: 447 VKQKMELWQDLSIAMEQDQFYLVFQPLFDLESNTPLSAETLLRWTHPEHGPISPATFVPL 506

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  ++ ++L  +AR    W D     P  I IN++    L N+  + +      
Sbjct: 507 AEQSGLISRLDHWVLNAVARQCRLWLDNELTLP-RIAINLSGISFLRNDFEQRLTNTFKA 565

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I+L  +E V++ +  R +  L R+R +GIS+++DDFGT  S LS +  +P D 
Sbjct: 566 HNVPLHHIELELTEGVLIEDLARIQEKLQRVRDMGISVSIDDFGTGYSSLSRIKNLPVDH 625

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       + + I+++II MA+ ++  ++A+ +  E  +  L    CD +Q  
Sbjct: 626 IKIDKSFIDDIDKNPQDLKIVQAIILMAQGLQLKVVAEGVETEKQLSILREEHCDVVQGY 685

Query: 939 HVASPLGFNSILKLLKE 955
            ++ PL       L+ E
Sbjct: 686 LLSRPLSVEDFESLIDE 702


>gi|301325064|ref|ZP_07218604.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|300848040|gb|EFK75800.1| PAS domain S-box [Escherichia coli MS 78-1]
          Length = 807

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQYEFR---VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++   R   +   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELLLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|317489697|ref|ZP_07948201.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911291|gb|EFV32896.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 1263

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/570 (22%), Positives = 239/570 (41%), Gaps = 46/570 (8%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGS-----MHGPIRNWL-----PYIHINDRD 462
            S D +++ ++  D          IL    G      + G I +         IH  DRD
Sbjct: 120 SSYDELFELNLTDD-------AYKILYHEPGKFTTPPLEGRISDMFPDVRDRMIHPEDRD 172

Query: 463 NFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            F    D       +    G L+ EFR       + W  + + P+          +    
Sbjct: 173 RFHAFWDFDTLLDRIEQAGGALRGEFRKHLESGAWSWTSLTVAPVKRGGSGERVVMCFIA 232

Query: 518 DITEQKK------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           DI E+ +          I     +D LTG+ N  +F D+   ++       ++      I
Sbjct: 233 DIEEEMQRRTDQAERSQIQLLRERDQLTGLYNAATFYDKAERLVAD---MPDIAYDAAYI 289

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILI-SENNSLK 629
           DI+ +K  N+  G   GD +L ++  RIGE+ +    +A  L G+ F ++L     +  +
Sbjct: 290 DIEHFKIYNEWHGREAGDAILRAIASRIGEIARKHGGIAGYLGGDDFTLLLPHGLIDEKR 349

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG- 688
           +        +    P +  +  I    + G  +  S  ++      +A +AM   K    
Sbjct: 350 VES------ELKKEPFDSED-TIGFQPAFGVCAIDSPDVSVVTACDHAMIAMNSVKGAYT 402

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                    ++        I  ++  A+ N E  L + P      E IVGLEAL++W HP
Sbjct: 403 KRIAWYEAEMTEEMETEAKILLEVKRALTNHEFVLHWQPQCNTRTERIVGLEALVRWQHP 462

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +    F+ + E    I +++L++ E   R I SW D+    PI + +NI+  DL  
Sbjct: 463 SRGIVMPGAFIPVLERNNFIASLDLYVWEEACRHIRSWIDRGG-VPIPVSVNISRADLYA 521

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++ E ++ L+S+       ++L  +ES    + E+    + RL+ +G ++ +DDFG+  
Sbjct: 522 IDVVEALEGLVSRYDLDHRLLELEITESAYAED-EKMADAVARLKGLGFTILMDDFGSGY 580

Query: 868 SLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L  I  D +K +   +     +++  +IL +I+ MA+ ++  IIA+    +  + 
Sbjct: 581 SSLNMLKDITVDILKIDMGFLARQDQSQRSESILEAIVSMARFMDLRIIAEGAETKEQVD 640

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L  +GCDY Q  +   P+   ++ +LL +
Sbjct: 641 FLQGIGCDYAQGYYFYRPMSTEALEQLLSQ 670



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 116/319 (36%), Gaps = 26/319 (8%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
              SD  R    + G+    W  ++   +                     + +W   +  +
Sbjct: 954  TRSDDNRLLDILKGAAVDHWYINVNT-KSFLNSADRRAWRY---WAGISLDDWSSSMLED 1009

Query: 460  ----------DRDN------FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
                      D +       F  +L  F    R     E+R+   ++   WM +  R + 
Sbjct: 1010 RLGKYTGPSQDAEAIENFLDFDDMLQRFADGERND-SLEYRL-GENDDERWMELSYRMVQ 1067

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               +G +  Y+ +  DI E+K+    +   A  D LTG+ NRQS   R+   L+ +    
Sbjct: 1068 LEEDGYVYAYLSV-TDIDERKRRELDLEDKAEHDALTGLLNRQSASVRMANALERTLQR- 1125

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              R    +ID+D +K++ND  G   GD VL  + + +    +  D++ R  G+ F  +  
Sbjct: 1126 GYRGAFAIIDLDDFKQVNDRYGHLSGDTVLADVAQHLCGAFRKGDLICRWGGDEFV-VYC 1184

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +     I    + + +          R I ++ S G A      I    + + A+ A+Y
Sbjct: 1185 EDMERDDIERRLVELSEGPWNATLPDNRVIELSVSTGIAMVPQDGIAFKTVYERADRALY 1244

Query: 683  HAKHRGGNHVESFRVSSFR 701
             AK +G  H   F      
Sbjct: 1245 RAKSKGKAHFCFFEADKDS 1263



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +    +   + G  S  +          +H +D    +++            +  FR   
Sbjct: 723 LQVNNEYYHVTGCNSIDLRERQNRISRQVHPDDLPLVQSMFAEAYERPVTGAEATFRRYR 782

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            + +  WM +R   +       + +     D+TEQK+  + + 
Sbjct: 783 LNGEIMWMRMRAFFLRREQDRTIFF-ASLADVTEQKQQEDELR 824



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 39/297 (13%)

Query: 376  VLIVILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTT---- 430
            +    L   T  +        SQ +   + E     +  S   VW  DI  DR++     
Sbjct: 805  IFFASLADVTEQKQQEDELRESQAVLELEDEVLHRIIQQSDLNVWVHDIASDRLSFQNLS 864

Query: 431  TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +  IA++L  ++                +D  N    L     + R   +   +V +   
Sbjct: 865  SNGIASLLAASADEEDTASLG-------DDVSNVLRRLSRETLWGRPAAR-TIKVWSNTG 916

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIP------- 542
            +   + I    + ++NG   R IG   D + + +  L     N   D L G         
Sbjct: 917  EPLTLHIEREIVQDANGKPARVIGYLEDPLNDSRAKLTRSDDNRLLDILKGAAVDHWYIN 976

Query: 543  -NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK--INDVLGIAVGDDVLVSLTRRI 599
             N +SF   L +    +            I +D +    + D LG   G          I
Sbjct: 977  VNTKSF---LNSADRRAWRYWAG------ISLDDWSSSMLEDRLGKYTGPS---QDAEAI 1024

Query: 600  GELLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               L F D+L R +       L     EN+  +  + +  M +            +T
Sbjct: 1025 ENFLDFDDMLQRFADGERNDSLEYRLGENDDERWMELSYRMVQLEEDGYVYAYLSVT 1081


>gi|330953340|gb|EGH53600.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 939

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         D   +  VM ID+D
Sbjct: 495 VRDRTRELDRANARLQHENSHDSLTGLPNRSHLQYRLRHAWQEFCCDGQ-QLIVMFIDLD 553

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       + A
Sbjct: 554 RFKMINDSLGHHCGDILLVQAAERLRSCMREKDLLARLGGDEFA-VLSIDTPLQTGTEIA 612

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 613 QRILTAFEQPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 672

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++  EALI+W  P   
Sbjct: 673 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNSGKLLAFEALIRWCMPDGR 732

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++ +ML+R+   +    +  + PP  + +N +S  +     
Sbjct: 733 IVGPESFLPALEGLRLIGRLDFYMLKRVVAILAQ-PENGHWPP--VHVNCSSYSITRPAF 789

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL +  L + G+S+ LDDFG   S L
Sbjct: 790 AAEVLAMLAEHNVAPERLCLELTEGALVADPEQARLSMKLLAEHGMSVMLDDFGAGFSSL 849

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 850 SYVHQYHFSGLKIDKSFIFGLASSVRSRAIVRAIVRMAESLDLTVVAEGVEDRETLELLR 909

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 910 EIGATQAQGYYFSEPLPIE 928


>gi|218704960|ref|YP_002412479.1| cAMP phosphodiesterase [Escherichia coli UMN026]
 gi|218432057|emb|CAR12945.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli UMN026]
          Length = 799

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPLHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRIRALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWISSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|269966741|ref|ZP_06180818.1| hypothetical protein VMC_22480 [Vibrio alginolyticus 40B]
 gi|269828664|gb|EEZ82921.1| hypothetical protein VMC_22480 [Vibrio alginolyticus 40B]
          Length = 533

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 213/441 (48%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 91  ILELHTVAEREKRNAVHDALTGLPNRKYCFESIEGRI-----QSRDPFSVILFDVVNFKQ 145

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+   LK  D + R+ G+ F  IL S             + 
Sbjct: 146 VNDAMGHFCGDQLLIQIGQRLQGKLKGNDQIFRVGGDEFV-ILTSSACEETGKKLIEELD 204

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    +T+  ++K+A++AMYHAK  G      +  +
Sbjct: 205 SAMSERFHLDEFQVSCRVVFGISTYPYDALTNDLLIKHADIAMYHAKRNGNLFAFYNEDM 264

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 265 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDAHTNLAVGFEAVIRWHDENGKTISPNDF 324

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ RD+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 325 IPIAERSNQVHNITMWVLNQVERDLQTFIEKG--IKLPVHVNLSAKDLSSNLLFNRLETL 382

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 383 LKVNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 442

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S ++ ++  E   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 443 VDQIKIDRSFLSTASRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLHFLRSRGCDII 502

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  + ++  + + 
Sbjct: 503 QGYLFCPALPLDEVISWVNKH 523


>gi|126665574|ref|ZP_01736556.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
 gi|126630202|gb|EBA00818.1| sensory box/GGDEF/GAF/EAL domain protein [Marinobacter sp. ELB17]
          Length = 806

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/432 (27%), Positives = 208/432 (48%), Gaps = 16/432 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  +G+   A  D+LTG+PNR+   +     L  +    +   ++  ID+D +K IN
Sbjct: 359 ERQEHQKGLEQAANFDSLTGLPNRRRLTELFEQELTFADQRQSA-LSICFIDLDGFKGIN 417

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G +VGD VL ++  R+  +L+  DI+ARL G+ F  I+    N+         M ++
Sbjct: 418 DDYGHSVGDAVLKTVAARLQHVLRECDIIARLGGDEFVAIIRDVENN----AVYERMLEA 473

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  PI+  +  + + AS+G   +         +L++A+ AMY AK  G N    F   + 
Sbjct: 474 IRRPISHQDLTLDLAASMGVTLYPRDPSAPDLLLRHADQAMYAAKDAGRNRYSIFDFETH 533

Query: 701 RSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +   RV I E    A+  S+  +   P I L  +++ G EALI+W+HP+ G +    F+
Sbjct: 534 VNRAERVRILEQTAKALGESQFEMYLQPKIVLASDQVEGFEALIRWNHPEKGLLGPISFL 593

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E      A+  F++      +  W+      P  + IN++   LL + L E +QA +
Sbjct: 594 PQLEHTEYAAAVGRFVIADAVAKLQHWKQLG--LPYSLSINLSPTHLLSDMLVEDLQAAL 651

Query: 819 SKTLYSP---SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
                 P   SR+ +   E+  + +P +   +L + R +G+ ++LDDFGT  S L +   
Sbjct: 652 Q--GCDPDIRSRLIIELLETTALDDPGKIMSILLKCRDLGVQVSLDDFGTGYSSLDHFRR 709

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S ++          I++SII ++KN +  ++A+ I  +    +L  MGC+
Sbjct: 710 LPAQEIKIDRSFVSDMLTNAGDEMIVKSIISLSKNFKRRVVAEGIENQAMQDKLIDMGCE 769

Query: 934 YIQDSHVASPLG 945
             Q      PL 
Sbjct: 770 QAQGFFYTKPLP 781


>gi|193067185|ref|ZP_03048154.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           E110019]
 gi|192959775|gb|EDV90209.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           E110019]
          Length = 807

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 231/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITGIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|327190376|gb|EGE57473.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 515

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 213/446 (47%), Gaps = 13/446 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR   ++ ++  + ++ + +   A  D LT +PNR+         ++    ++     V 
Sbjct: 68  LRIRDLSREVARRLQAEKNVDWIACHDTLTELPNRRFLESVCAQAMNERTAEET--YAVF 125

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D +KK ND+LG   GD VL ++ +R+  L    D + RL G+ F I+     N+  
Sbjct: 126 SIDLDGFKKANDLLGHDHGDAVLKTVAQRLSSLF-PRDHVFRLGGDEFVILARRVANAD- 183

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +  +I  P       + + AS+GFA +  +     +++++++ AMY AK +G 
Sbjct: 184 LVALGNRIVSAIGKPFTFNGAAVDLGASVGFALYPENGDELGQVIRHSDCAMYVAKKQGR 243

Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N V+SF  S       R+ I+ DL  A+  +E+   Y P++ L   +I+G EAL +W   
Sbjct: 244 NLVKSFVPSMQDELAKRIRIEGDLRAAIRKAEIVPYYQPLVDLKANKIIGFEALARWKTA 303

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               I  SEF+ +AEE  +I  +   +L R   D +SW  +     + +  N++   L D
Sbjct: 304 SGEFIPPSEFIPVAEEAGLIVELTDQLLRRACTDALSWPSE-----LVLSFNLSPIQLSD 358

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  ++        R++L  +ES ++ +   +R++L  L   G+ + LDDFGT  
Sbjct: 359 RLLGLRILKILGDVGLPAHRVELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGF 418

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L    FD +K + S +    + +K+  ++++II +   +   I A+ I  E  ++
Sbjct: 419 SSLSQLSSYRFDKIKIDRSFVASFETNDKQDKVIKAIIALGAGLGVAITAEGIEEESQLQ 478

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L  +GCD  Q   +  P     I  
Sbjct: 479 RLQDLGCDIGQGYLLGRPAPIEEIAA 504


>gi|92118741|ref|YP_578470.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91801635|gb|ABE64010.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
          Length = 615

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/579 (22%), Positives = 247/579 (42%), Gaps = 23/579 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q       F   + S     S  V      V   D   + V      A    + +  M G
Sbjct: 26  QTDRKGARFDDSVSSRLNFLSEVVRSLPAGVTVQDEQGNFVLVNAAAAAQFNVPARDMVG 85

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
                     +NDR   R +    +     R+  E  +   D+     +    P+  SN 
Sbjct: 86  TSGAPFRSRELNDR---RHLARGVLQSGGTRISEE--LIRTDHATTVYLTTHEPVLISNR 140

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   +  + DI++QK   E +   A+ D LTG+P R+       +++        +R  
Sbjct: 141 KL--VLSSSVDISQQKAIEEELFRCAYYDELTGLPTRRVIEQHANSLIREGG--YPVRFA 196

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V  +DID +K IND  G A GD++L+ + RR+G  L+  D+L+R+SG+ F ++L    + 
Sbjct: 197 VAFLDIDNFKHINDYYGHASGDELLIEVARRLGVGLRTTDMLSRISGDEFLLLLNPVESD 256

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++A++   + + +  P  +   E+  +ASIG + +     +   + +NA+ AMY  K+ 
Sbjct: 257 AEVAEYIEFLLQRLKAPFFIDGSELFASASIGVSIYPDHGGSYEVLRQNADTAMYRIKNE 316

Query: 688 GGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                  F   +      R+ I++ L LA+ +      + P + +  ++I G+EAL++  
Sbjct: 317 TKGAAAIFDSGMQREALARMEIEQSLRLAILDKRFCCAFQPKVDIRTQQIKGIEALVRLR 376

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             +    +   F+ +A EL +I  +   +L  I R I    D      + I IN+A+K  
Sbjct: 377 DDEGIIQAPGTFIDLAVELGLIDELTHLVLAEIMRSIDLIDDTFG-TGVGISINVAAKQA 435

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            +          + KT   P+R  +  +E   +        +L  LR++G+ +++DDFG+
Sbjct: 436 GNVAFMTSFARALEKTGC-PTRFIVEVTEDAFVAKARFQAEILPILRRLGVGISIDDFGS 494

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS L  I  D +K + S +       +   IL++I  +++ +  T+IA+ +    +
Sbjct: 495 GYSSLSALADITADEIKIDRSFIVDIHKRPRSQGILKAIESLSEALGMTVIAEGVETFEE 554

Query: 924 IKELTRM-GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           +  L       Y Q  + + P+        L+E  P  +
Sbjct: 555 LAYLQAATRIKYAQGFYFSEPV-------FLEEHQPGSR 586


>gi|308126370|ref|ZP_07663732.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AQ4037]
 gi|308106826|gb|EFO44366.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AQ4037]
          Length = 494

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 213/441 (48%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D+LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 52  ILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRI-----QSGDPFSVILFDVVNFKQ 106

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ + LK  D + R+ G+ F I+  S        +   ++ 
Sbjct: 107 VNDAMGHFCGDQLLIQIGQRLQDKLKGNDKIFRVGGDEFVILTSSACEKTG-TELIESLD 165

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    I++  ++K+A++AMYHAK  G         +
Sbjct: 166 CALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDM 225

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 226 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDF 285

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 286 IPIAERSNQVHNITMWVLGQVEKDLKTFIEKG--IKLPVHVNLSAKDLSSNLLFHRLEKL 343

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 344 LENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 403

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 404 VDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDII 463

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 464 QGYLFCPALPLNEVINWVNEH 484


>gi|301306135|ref|ZP_07212212.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300838635|gb|EFK66395.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
          Length = 581

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 80  NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 124

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 125 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 182

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 183 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 237

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 238 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 294

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L   + N++L LVY P I     E+
Sbjct: 295 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKETISNNQLKLVYQPQIFAETGEL 354

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 355 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 413

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 414 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 473

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 474 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 533

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 534 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 579


>gi|76808882|ref|YP_332900.1| EAL domain-containing protein [Burkholderia pseudomallei 1710b]
 gi|76578335|gb|ABA47810.1| EAL domain protein [Burkholderia pseudomallei 1710b]
          Length = 580

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 120/557 (21%), Positives = 244/557 (43%), Gaps = 20/557 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D      +L    
Sbjct: 23  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRELIPEQDTATLDALLARA- 79

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +    +  +    + + + +R + + +  +  +   A D++  +     +   
Sbjct: 80  SQTGDVEKATLCLVKS--LTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTYE 137

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +L
Sbjct: 138 LHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDALL 196

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLE 649
               +R+  L    + LAR++ ++F ++L               A  ++ ++  P     
Sbjct: 197 RDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAALDAAEALARQLQTAVQRPYAYDG 256

Query: 650 REITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSFR 701
           + + ++AS+G A +             S +L+ A+ A+  AK  GGN             
Sbjct: 257 QAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPAD 316

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W HP  G ++ + F+ +A
Sbjct: 317 AERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWHHPVHGLVAPATFIPLA 376

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  T
Sbjct: 377 ESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKLT 435

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   +
Sbjct: 436 GIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAKL 495

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ   
Sbjct: 496 KIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGWL 555

Query: 940 VASPLGFNSILKLLKER 956
           V   L  + + +  + +
Sbjct: 556 VCQALPSDELAQRFEAQ 572


>gi|323973670|gb|EGB68846.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 807

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLFLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSIDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|152989886|ref|YP_001355608.1| hypothetical protein NIS_0136 [Nitratiruptor sp. SB155-2]
 gi|151421747|dbj|BAF69251.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 1054

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 227/550 (41%), Gaps = 22/550 (4%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
               A+  S + V   D     +     +  + G     + G     +           ++
Sbjct: 518  LRKALEKSDEWVLVADEQGKIIYVNEFVEKVSGYTKDEILGKNPNLFKSGYQP--VHFYK 575

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +    +       +  F  RA   +  ++  +I P+    G   R+I +  DIT++K+ 
Sbjct: 576  KLWSEIIAGN--EFEAIFVNRAKGGKLFYLDQKIVPIVLP-GASKRFIALGRDITKEKEL 632

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             + +    + D +T + N   F  ++  +L+ +         + VIDID++   N + GI
Sbjct: 633  SQELEHIRYHDVITDLYNFNGFKFKVEELLEQTKQ--GEYAALAVIDIDRFSYFNKIYGI 690

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            + GD++L  +   +        I+A+ +G+ F +   + +   ++      +        
Sbjct: 691  STGDEILRRIATMLLVHFGKDTIIAKTAGDEFSLFFPNIHQEKQLFVIKFELENIFRHSF 750

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDR 704
             + E  I ++   G A + S   + SE+ +NA LA+  AK         +  +       
Sbjct: 751  RVEENVIKLSVRGGIALYPSDAKSFSELYENAFLALKKAKQENQNIIFFNPDIEKGVRYS 810

Query: 705  VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            + +++ L  A+EN E    Y P      +++ G EAL++           ++F+   EE 
Sbjct: 811  LQVQQLLAQAIENKEFLFHYQPYFEAKTQKLAGFEALVRIKDVHGNIHYPNDFIDYLEES 870

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
              +K    + L+ +A  I  W        + I INI+++   + E    ++         
Sbjct: 871  TYLKEFESWALQEVAEKINQW-------NLPISINISARTFQNPEFPIKIKQYTKMLKKP 923

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIG-ISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               +K+  +E + M + + ++ L+  L+    + + +DDFGT  S LSYL  +  D +K 
Sbjct: 924  ---MKVEITERLFMKDIQFTKKLIELLKMSDTLEICVDDFGTGYSSLSYLEELEVDVLKI 980

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +     + +  A+++ II +AK +    IA+ +  +   + L   G DYIQ  + A
Sbjct: 981  DISFVRKMVHSSRAKAVVQGIISIAKALHMKTIAEGVETKEQYELLRDFGVDYIQGFYFA 1040

Query: 942  SPLGFNSILK 951
             P+  N +++
Sbjct: 1041 KPMWENEVIE 1050


>gi|269968391|ref|ZP_06182409.1| hypothetical protein VMC_38390 [Vibrio alginolyticus 40B]
 gi|269827018|gb|EEZ81334.1| hypothetical protein VMC_38390 [Vibrio alginolyticus 40B]
          Length = 567

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 240/560 (42%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    ER         + ++  D     V         LG+ +G +   +  WL  +
Sbjct: 14  REFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNKGFYEQLGINAGRI--SLEQWLDLV 71

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+   T +D+ +     R+   +RVR  + Q+ W+          +G     +G  
Sbjct: 72  HPLDRERLSTRVDAHIITNNTRVTTTYRVRKPNGQYVWIEGVAMTKETEHGH--YMVGSH 129

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  L   ++ S    +   ++  I I++ 
Sbjct: 130 RDISERKLMESYIHQVAFHDNASGMANRAHLL--LD--IEDSVRATDSCASICYIQIEEI 185

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + D ++  L + +  L      + R+  + F I++  E +   +  +A +
Sbjct: 186 KSYLNQYGSELVDGLVEKLLQTLSHLPSPNSSVYRVHDDDFAILIHDECSVETLQSYAES 245

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           ++++    +    + +    SIG         ++ E+L+ A     +A  +  + V  + 
Sbjct: 246 LKETYHEAVIEEGQYLGSNISIGLYPCIDPSHSAEEILRKAARTCQYASEQNKDRVAVYS 305

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +          I++ L  A+E   L + + PII     ++V  E+L++W   ++G I  
Sbjct: 306 EKTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIIDAKSSKVVSFESLVRWRSKEFGEIYP 365

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I  +   +  +    I ++R++     + + +N++   L+++E    +
Sbjct: 366 DEFIPVAENKGLIVELGYQVFAKACEFIKNYRERYQNQ-VRVNVNVSVLQLMNSEFPARI 424

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +    P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG+  S L+   
Sbjct: 425 KAMADEVGVDPESIVLELTETFILDNNQTAIAPLNTLRELGFALSLDDFGSGYSSLNSFF 484

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M +     ++ + I      +  T MG 
Sbjct: 485 DLPMTQIKIDRSMAWKTLTNRSSQEYLKFLITMCQENSIEVVIEGIEDAKMCEFFTEMGV 544

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 545 DYLQGYWFSKPLSVASASRY 564


>gi|255654546|ref|ZP_05399955.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 1032

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/553 (22%), Positives = 245/553 (44%), Gaps = 33/553 (5%)

Query: 420  DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNF-----RTILDSFV 472
            D +++   +  +     IL          I +++    IH +D   F        +DS  
Sbjct: 497  DTNLIT-PIYQSES--NILNFPIKENIEKIFSYIKKHLIHPDDIILFDDNLLLKSIDSPN 553

Query: 473  GYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNG---DILRYIGIANDITEQKKSLE 527
              ++G   L +E+R    D ++HW ++ I  +S+ N         +    +I    +  +
Sbjct: 554  NSKQGDLELNFEYRHLGIDEKYHWALLYILKISSKNNLGEKQTHILVAIKNIDYLMQIHK 613

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                    D LTG+ N +SF ++ + +L            ++++DIDK+K IND+ GI  
Sbjct: 614  NQK-----DTLTGLYNYESFCEQTSLML---KRYPGKCYAIIMMDIDKFKVINDIYGIRG 665

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD  L+ +   I + +    I  R+  + F I   S ++   I      ++ ++      
Sbjct: 666  GDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDRE-IHKVIYNIKNNLNR---- 720

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
             + E  +    G      + I  +   + A  A    K +  NH   +     +   +  
Sbjct: 721  KKFEYMLVPCFGVYKILDNHIPITSACEMAGYAHKKVKKQSINHYIFYDDTIRNDALEEK 780

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             ++ ++  A+EN + ++   P   L   +IVG EAL++W HP+ G I   +F+ + E+  
Sbjct: 781  HMEREMEYALENGQFHVYLQPKYNLNTNKIVGAEALVRWVHPEKGIIPPIKFISLFEKNG 840

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
             I  +++++ E++   I  W D     P+ I +N++   L +    E + +LI+K     
Sbjct: 841  FIIKLDMYVWEQVCSLIRKWID-LGEEPVPISVNVSRLHLHNPHFKEIVLSLINKYGIPK 899

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            S ++L  +ES+ + N +    ++  LR  GI L +DDFG+  S L+ L  I  DT+K + 
Sbjct: 900  SFLELELTESLFIKNIKLFTKVIADLRMDGIVLNMDDFGSAYSSLNMLKNINIDTLKIDC 959

Query: 886  SLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                  G T++   +L+  I MAK+++  ++A+ +  +   + L  + C  IQ  +   P
Sbjct: 960  GFFNGEGITDREKIVLKHTIAMAKDLDMDVVAEGVETKEQAEFLVSLDCVVIQGYYYCKP 1019

Query: 944  LGFNSILKLLKER 956
            +  +   KLL ++
Sbjct: 1020 IPSDDFEKLLYQK 1032



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 56/317 (17%)

Query: 519 ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +TE KK      +   ++ D LT   NR  ++      +D    D      V+ IDI+  
Sbjct: 274 LTEMKKRKVENKLNYMSYYDFLTSAYNRNRYI----KYIDTFQKDKVKSIGVVFIDINGL 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD +++S++  I +       + R+ G+ F ++     +     +    
Sbjct: 330 KDINDNFGHASGDAIIMSVSVMIQKYFHSY-YVYRIGGDEFVVLCEDI-SKQLFEELVSW 387

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           + + +   +         +A++G + W+   I   +++K A+  MY  K R       + 
Sbjct: 388 LTEELKDNME-------CSAAVG-SIWSEDDIDIHKLIKVADERMYQDKKR------YYN 433

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH---PKWGNIS 753
               R++ + +  DL  +  N  L        R +D E+   + +I+       K    +
Sbjct: 434 KIELRNNEMKVVSDLSDSTNNISL------KCRDLDNEVYFDDLMIKGYSKAYEKLAYNT 487

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               + I  +  +I  I              ++ ++N+    I            E  E 
Sbjct: 488 YDIILSICMDTNLITPI--------------YQSESNILNFPI-----------KENIEK 522

Query: 814 MQALISKTLYSPSRIKL 830
           + + I K L  P  I L
Sbjct: 523 IFSYIKKHLIHPDDIIL 539


>gi|293404968|ref|ZP_06648960.1| cAMP phosphodiesterase [Escherichia coli FVEC1412]
 gi|300895689|ref|ZP_07114286.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|291427176|gb|EFF00203.1| cAMP phosphodiesterase [Escherichia coli FVEC1412]
 gi|300360383|gb|EFJ76253.1| PAS domain S-box [Escherichia coli MS 198-1]
          Length = 807

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPLHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRIRALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWISSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|126667212|ref|ZP_01738186.1| predicted signal transduction protein [Marinobacter sp. ELB17]
 gi|126628368|gb|EAZ98991.1| predicted signal transduction protein [Marinobacter sp. ELB17]
          Length = 730

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 206/428 (48%), Gaps = 12/428 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E K+  E ++  +  D LTG+ NR      + ++L            V VI+ID ++ 
Sbjct: 301 VAEAKRLKE-LMYLSRHDELTGVGNRSGLSASIKSLLRRKQ-----SFMVAVINIDHFRG 354

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G   GD VL +  RR+  ++   D++ARL  + F +++   N    +   A  + 
Sbjct: 355 VNDRFGQEYGDQVLCAFARRLLSVVDDKDVVARLGADEFVLLIKVVN-LQALESHARQLS 413

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRV 697
             +  P+ L +  + + ASIG A       + + +L++A LA+Y AK  R    +    +
Sbjct: 414 HQLDKPLELEQFPLQLGASIGVAVSPRDGDSVNTLLRSAHLALYQAKKSRNDWCLYREEL 473

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 RV +++ L  A+   +L +V+ P +  + + + G EAL++W   + G +   EF
Sbjct: 474 EQAYIRRVQLEQRLRQALSLGQLTMVFQPQVDHV-KVVYGYEALVRWYDEELGQVGPDEF 532

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   ++ A+  F++E   R+   +          + +NI+    L     + + +L
Sbjct: 533 VGVAESSGLMPALGQFVMETSVREFSEFVGAQGEMR-KLAVNISVLQFLQPGFAKDVLSL 591

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+   SP ++ L  +ES+ + N +    +L  LRK G+ +++DDFGT  S LS L  +P
Sbjct: 592 LSRYGLSPKQLVLEMTESLFISNFDDVLAVLNELRKQGVRVSMDDFGTGYSSLSLLRTLP 651

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + + + G  +      ++ SII +A++ +  ++A+ +  E     L  MGC   
Sbjct: 652 LDELKIDKTFIDGLLDDHKVQNMVASIISIARSHQLELVAEGVETEGQYLALMAMGCKLF 711

Query: 936 QDSHVASP 943
           Q  +   P
Sbjct: 712 QGYYFGRP 719


>gi|145593783|ref|YP_001158080.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145303120|gb|ABP53702.1| diguanylate cyclase/phosphodiesterase [Salinispora tropica CNB-440]
          Length = 726

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 201/441 (45%), Gaps = 21/441 (4%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                  A  D LTG+ NR+  L  L    +           + ++D+D +K +NDV G 
Sbjct: 257 EAHFRELAHTDALTGLANRRGLLRDLHRCAER-----GTGCVLFLLDLDGFKNVNDVRGH 311

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL  + RR+   L+  D+ ARL G+ F ++L     +         +  ++    
Sbjct: 312 DAGDAVLAEVGRRLRGPLRSGDVAARLGGDEFAVLLPGPPPTTD--QVGERLLAALGAAY 369

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L E  + ++ASIG A W + +     +L++A+LA+ +AK RG N  E + V+  +    
Sbjct: 370 ELPEGPVFLSASIGIAGW-AGQPDVELLLRHADLALRYAKQRGKNRFERYDVAYDQLLSR 428

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++ +L  A+E  EL LV+ P+  L     VG EAL++W HP+ G +   EF+ +AEE
Sbjct: 429 RATLEHELRGAIERDELRLVFQPVASLPSVRPVGAEALLRWRHPELGAVRPDEFIPLAEE 488

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  +  ++L++    +  W    +   +++ +N++ ++L        +   +     
Sbjct: 489 CGMIAKLGAWVLDQACYQLSRWLADGHD--VWVSVNVSPRELHAPAYVGQVTDALRVHRV 546

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R+ L  +E  V  + +     L  LR+ G+ + LDDFG   S L  L  +P D +K 
Sbjct: 547 PPQRLVLEVTEHAVATDLDELIRRLTALRRTGVRIALDDFGAGYSSLGQLRRLPLDILKI 606

Query: 884 NGSLMTGSTEKRIA---------ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           + SL+ G                ++  ++ +   +   +IA+ +    ++ E+   GC +
Sbjct: 607 DHSLVAGHEPVHPVDADGPAFAPMVDIVMRLGHQLGLGVIAEGVTTPTELAEVVAAGCHF 666

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q + +   +    +  +L+ 
Sbjct: 667 GQGALLGWGVPAEHLEAMLEA 687


>gi|256380632|ref|YP_003104292.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Actinosynnema mirum DSM 43827]
 gi|255924935|gb|ACU40446.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Actinosynnema mirum DSM 43827]
          Length = 871

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/808 (18%), Positives = 306/808 (37%), Gaps = 79/808 (9%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSS-----SLIIFLF 270
           +L+  F +A  +   + +  G    +        L +  A  E+ L++        +   
Sbjct: 58  LLVVGFLLAEQLAINVDVRSGVAWTISFTEIPLVLGLLVAPFEVVLAAHVVAGVGTLLGR 117

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
             L    ++A + ++  S    +A              + A +   S+ L  +   +   
Sbjct: 118 RVLDRAVYNAGLMFMEISVAFAVADAVNRFVGDTGPAWAGAFVGTISVPLLASVLGLTAL 177

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
               +   L     +++    + L       +  ++   A  GGL++++   G T I   
Sbjct: 178 RLMRKGMRLAPSGRLVLQTLVVALLNTAAGLVAYEVADHAQWGGLLIVLAFAGITAIYLA 237

Query: 391 LATGYFSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTT---------TPDIATILGL 440
            +          D E  S   +  +              T            +   I   
Sbjct: 238 YSGLLRE---QRDLEALSEVSLRVARSGRHGTGPRGGATTAVDAEDGKAEADEWQHIAER 294

Query: 441 ASGSMHGPIRNWLPYIHIN----------------DRDNFRTILDSFVGYRRGRLQYEFR 484
               ++                              RD+ RT  +  +    G     FR
Sbjct: 295 IREQLNANRVVLRLRTDPQAPMRTLVAGEPLPQAMRRDDARTSREDAMLQLPGTQVRYFR 354

Query: 485 VRAADNQFHWMIIR-------IRPMSNSNGDILRYIGIA-----------NDIT------ 520
           V  A  +    ++R       + P+      +L  + +             DI       
Sbjct: 355 VADAGEEATDALVRRDAQEALVVPLRGGATQLLGAVEVHDRLSRWRGFGKADIQLLRTLA 414

Query: 521 -------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
                  + ++ L  +  +A+ D LTG+ NR  FL+            ++    V+ +D+
Sbjct: 415 NHLSTAVDNRRLLARLRHDAYHDPLTGLLNRTGFLEA-----AAEPVRESGAAVVLRVDL 469

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D    + D LG A GD ++V+  RR+ + L     LARL G  F  +L+    + ++ + 
Sbjct: 470 DVLSTVLDALGQAWGDRMVVAAGRRLRDELGPDVPLARLDGGAFAALLVDRK-AERVKEI 528

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFA---SWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A  +R  +++P  +    +   A +G+A           +  +L+ A++A+         
Sbjct: 529 AERLRARLSVPYPVDRLTVEAGAIVGWADVAEVEDDAKDADSLLQRADVALRATSENEPM 588

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
              +  +      R  +      A+EN ++ + Y P I L   +++G E+L++W HP++G
Sbjct: 589 RAYAPSMGQIFLRRFQLVTQFRSALENGQISVHYQPKIALPSRQVIGAESLVRWKHPEFG 648

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+   E   ++  +  F++++    +  W D      + I +N++ + L D E 
Sbjct: 649 RVDPDEFIPAVEATGLVDVLTDFVMDKGLERVRRWMD--RDLRMSIAVNLSVRTLADEEF 706

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++  + +    P  +    +ES VM +PER+  +L RL  +G+ L +DDFGT  S L
Sbjct: 707 PDRVKEALDRHRVPPELLTFELTESGVMADPERALPVLRRLHTMGVVLAVDDFGTGYSSL 766

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL  +P D VK + S + G       +A++RSI+ +  ++  T++A+ +  +    +L 
Sbjct: 767 AYLRQLPVDEVKIDKSFVLGMGTDLGDMAVVRSIVELGHSLGLTVVAEGVEDDAARDQLV 826

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
            MGCD  Q   ++ PL        L+ R
Sbjct: 827 GMGCDVAQGYLISRPLSEERFEAWLRAR 854


>gi|323137852|ref|ZP_08072927.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
 gi|322396855|gb|EFX99381.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
          Length = 654

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 207/449 (46%), Gaps = 12/449 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  +  L  A  D+LT + NR++F   L      +      R  + V+D+D +K +N
Sbjct: 210 ETQRLSDENLRLANLDSLTELANRRNFFGALDEAFTAAKLSRR-RLAIGVVDLDGFKPVN 268

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +LV   RR+    +    L RL G+ F +I+  + +   I DF   +   
Sbjct: 269 DTHGHLVGDRLLVEAARRMELCCEGVARLYRLGGDEFALIVAGDPSDRAIIDFGRRLIAV 328

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P  L E ++ + +S+GFA +  S  T   + + A+ A+Y+AK         F     
Sbjct: 329 IRAPFYLGELDVRIGSSVGFAVFPDSADTPPRLYERADYALYYAKRHKRGEAILFSQEHE 388

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              R   +I+  L  A   SEL +V+ PI+       + LEAL +W  P  G +S + F+
Sbjct: 389 EQIRKYGVIELALNSADLESELSMVFQPIVDARTGRTLALEALARWTSPSLGEVSPANFI 448

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE    I+ +   +L +       W +Q     + +  N+++ D+   +    +  +I
Sbjct: 449 PVAERSGFIRRLTKVLLRKALAAANDWPEQ-----VRLSFNLSAHDISAADGVLQIIDII 503

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P RI    +E+ +  + +++   +  L+ +G+ ++LDDFG   S LS++  +P 
Sbjct: 504 HRSGVDPRRIDFEITETTIAHDFDQACETIRALKALGVGISLDDFGAGYSSLSHVRNLPL 563

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   T       +++++  ++ +I  T +A+ +     +  L  +GC+  Q
Sbjct: 564 DKIKIDRSFVVDITTNEISYNVVKALQSLSADIGVTCVAEGVERPEQVLALASIGCNIAQ 623

Query: 937 DSHVASPLGFNSILKLLK--ERFPLVKNT 963
             + + P+    +   L   ER P  +  
Sbjct: 624 GYYFSRPIAEPEVAAYLLAGEREPGYRRA 652


>gi|237811642|ref|YP_002896093.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei MSHR346]
 gi|254260920|ref|ZP_04951974.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1710a]
 gi|237502678|gb|ACQ94996.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei MSHR346]
 gi|254219609|gb|EET08993.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1710a]
          Length = 611

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 120/557 (21%), Positives = 244/557 (43%), Gaps = 20/557 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D      +L    
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRELIPEQDTATLDALLARA- 110

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +    +  +    + + + +R + + +  +  +   A D++  +     +   
Sbjct: 111 SQTGDVEKATLCLVKS--LTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTYE 168

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +L
Sbjct: 169 LHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDALL 227

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLE 649
               +R+  L    + LAR++ ++F ++L               A  ++ ++  P     
Sbjct: 228 RDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAALDAAEALARQLQTAVQRPYAYDG 287

Query: 650 REITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSFR 701
           + + ++AS+G A +             S +L+ A+ A+  AK  GGN             
Sbjct: 288 QAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPAD 347

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W HP  G ++ + F+ +A
Sbjct: 348 AERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWHHPVHGLVAPATFIPLA 407

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  T
Sbjct: 408 ESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKLT 466

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   +
Sbjct: 467 GIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAKL 526

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ   
Sbjct: 527 KIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGWL 586

Query: 940 VASPLGFNSILKLLKER 956
           V   L  + + +  + +
Sbjct: 587 VCQALPSDELAQRFEAQ 603


>gi|260223091|emb|CBA33308.1| hypothetical protein Csp_B18400 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 973

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/954 (14%), Positives = 315/954 (33%), Gaps = 53/954 (5%)

Query: 16  LILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVN--QGEDFQVFTAADIDGISR 73
            +    L+ + + +  ++   + +S          R++ +           A+       
Sbjct: 15  FVFPFLLIGLAAFALVMQAGRVENSAGRQL---ELRVWEDSSPSGTSSAQLASAKLNAVS 71

Query: 74  RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPS 133
             ++  + +  R  W   ++A  +        V+             D  S  +  +   
Sbjct: 72  PTKLLETHLSTRPFWVALSVARDTP-------VIDFPSRHAMALSCWDAESGVV--LGSG 122

Query: 134 EGFSLDRIPNSDSDVFRITIN--PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLY 191
              + DR  ++    F + +       +  I     P       W     + +  +    
Sbjct: 123 NRSTTDRRMSTSRAGFSLDLEGVATRSLLCIASFRGPAKISAEGWTHESLESSQLAHHRS 182

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
             +I     +LA+F+ +  +VN+S + +       + +    I  G              
Sbjct: 183 GIMIEAAIGMLAVFMLLTALVNKSRLYLTFVGWLLLNMRMAGISAGTDFVFFGYQIPADY 242

Query: 252 IWRACSEIAL---SSSLIIFLFMYL-HWNRWHAKV-GYITFSGIACIAILFCMSFYYPMV 306
           +            + ++++F  ++     ++  ++  ++         +L  +  +  M+
Sbjct: 243 LIAVRQLTVCSYFAITIVLFNLLFSKELKKFAFQLPLHLLQVSALTALVLGPLLPFEAML 302

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
                   +   V++    +I   +  + R      A + + +      +         +
Sbjct: 303 VGVWLGTVIGVAVIFCYLILI--LVGNHSRVAGWYVASMAVTLGASLNEVIAAALDQRAL 360

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +         +   L+    +   + T           +    A   S   ++       
Sbjct: 361 LIGLNSVSAAIASALLASAAVAEHMRTHRLQ--TLRAQQLLEAAYQDSPIGLFSVGDGVL 418

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                P   +++     S    +  +       D +  + I    +    G ++ +  V 
Sbjct: 419 ISKMNPAFESLMRAEPQSSPIRLPEFF------DSETVKRIAALHLEIAGGTIELQTSVE 472

Query: 487 AADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           + D     W  IR   +   +G I+       DITE+  + E +   A  D LTG  N  
Sbjct: 473 SEDGLTRRWFAIRASTV---DGSIIEC--SLQDITERVSATERLEFLASHDPLTGCLN-- 525

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
                L  +   +         +   D+D++K IND+ G   GD VL  +  R+  +L+ 
Sbjct: 526 -----LRGLGQQAGAAQQRPVALAYFDLDRFKLINDLYGHTAGDLVLKQVAERMRRVLQT 580

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D+LAR+ G+ F ++                     + P  +  +   +  S G      
Sbjct: 581 GDLLARIGGDEFVVVFYQGKMPECEVKCNTITTLIGSAPFQIESQSFALDVSAGLVGTDQ 640

Query: 666 -SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE----- 719
                  E++  A+     AK R    +           +   + DL   +E  E     
Sbjct: 641 FKYSELKEIVSAADTLCRMAKKRSHQRMVVMESGDRFFQQHQDELDLINCLERGETPEGL 700

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             ++   +      + +  E LI+        + +   +  AE       I+ +++    
Sbjct: 701 FLVMQPEVSLSRPFDSLNFEMLIRLRKADGTIVPAGTIIEAAEAHGKTAIIDRWVVNTAI 760

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R + +   +      F+ +N++   L D    E + AL  +   +  +I +  +E+V + 
Sbjct: 761 RWLEAHTHELRNTH-FVGVNLSGGSLNDELFTEELFALFKQHPVALEKICIEITETVAIT 819

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           +    +  + R+R +G  + LDDFG   S   YL  +  D++K +GSL+  +  ++   A
Sbjct: 820 DMRNMQRFIDRVRSMGGKVALDDFGAGYSSFGYLKGLSVDSLKLDGSLVRDAVRSQAGQA 879

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           I+ +I  +  ++    + +       IK L   G DY Q   ++ P+  + IL 
Sbjct: 880 IIVAIAGLVSSLGMKSVGEFAEDLPTIKVLYEAGIDYAQGYGLSKPVEADRILA 933


>gi|149194689|ref|ZP_01871784.1| hypothetical protein CMTB2_04892 [Caminibacter mediatlanticus TB-2]
 gi|149135112|gb|EDM23593.1| hypothetical protein CMTB2_04892 [Caminibacter mediatlanticus TB-2]
          Length = 832

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/549 (22%), Positives = 256/549 (46%), Gaps = 26/549 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTIL 468
           A+  S   V   +           +  +       + G     +    H  D   ++ + 
Sbjct: 300 ALENSDMWVVITNEKGIIEYENKTVEKLSKYKLEELIGKKPNIFKSGFHSED--FYKNLW 357

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           D+    +          +A D  F ++  +I P+ N  G I +YI IA DIT++KK L  
Sbjct: 358 DTIKKGKI--FNAILINKAKDGTFFYLKDKIIPV-NYKG-IKKYISIAIDITKEKKLLAQ 413

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           I    + D LT + N+++FL+++  ++  +  + +     ++IDI  +  +N+V+G   G
Sbjct: 414 IEKIKYFDILTSLYNKETFLEKIDEVIKTNNKNIHFS---ILIDICNFSAVNEVIGFQNG 470

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           + +L  +++++ ++     I++RL  + FGI L + N    + +    +++       + 
Sbjct: 471 NILLQEISQKLKKVAPKK-IISRLDADEFGIFLDNSNEKE-LLNIISKLKEFFEKSFVIN 528

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706
           E+EI ++ +IG +S+      +  +L  A +A+  AK +G N +++F        ++ + 
Sbjct: 529 EKEIKLSFNIGISSFPKDGEKAKSLLSKASIALNIAKQKGPNTIKTFENYLLEDINNYIN 588

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
               +   +E +   L + P +    ++I G E+L++  + +   IS+ +++ I E+  +
Sbjct: 589 DIHTIKDCLEKNRFLLFFQPYVNANTKKIRGAESLLRMVNEQGEIISAGKYIEIIEKNNL 648

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  + + ++E+            +   I +  N+++ +   N++   +  L +K      
Sbjct: 649 INKLTINLIEQ-------LDYTLSKVNIKLSFNLSANNFYSNKVKLKLIELSNKHK---E 698

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ L  +ES+ + N E     L  +RK G  ++LDDFGT  S L+YL  +P D +K + S
Sbjct: 699 KLVLEITESIAINNLELVTEFLNDIRKNGTLISLDDFGTGYSSLTYLEKLPIDILKIDLS 758

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +     + K   I+++II +AK +    IA+ +  +   K L  +G D IQ  +   PL
Sbjct: 759 FVKKITTSTKNRQIIKAIIELAKALNLKTIAEGVEEKEQFKILKNLGIDCIQGYYFYKPL 818

Query: 945 GFNSILKLL 953
              ++LK+L
Sbjct: 819 DEKTLLKVL 827


>gi|323496997|ref|ZP_08102020.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317841|gb|EGA70829.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 846

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 198/431 (45%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S   +      D+LT + +R+  +D   T+         L  T+M++ I+K++ IND
Sbjct: 415 LKASFRALRTQLLYDSLTKLYSREGLIDTCDTL-------SKLDGTLMLVGINKFRDIND 467

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +LV ++ R+  +     +LAR+ G+ F I +     S + A  +  + +  
Sbjct: 468 SLGHYKGDQLLVIISERLKTVFPEECLLARIGGDEFAIYIPQPQTSEQNALTSNRILQVF 527

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           A P  +    I V+ S+G      S    +  L+N  +A+ +AK         S  ++  
Sbjct: 528 ASPFIMEHESIVVSISVGIVEGGPS-QNMTLWLRNGSIALSNAKLESTRISYYSPEMADI 586

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  +   +   +EN E    Y PI+ +   +++G EAL +W  P  G +S  EF+ I
Sbjct: 587 SRKRTQMLAKIKEGLENREFVPFYQPIVDINTGKVLGAEALARWLSPSSGLVSPLEFIPI 646

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I A+   +L +   D +   +         + +N++   L   +    +Q ++ 
Sbjct: 647 AEESGLIGAVGEQILIQACNDTVQGIQQGKWDASFHMHVNLSVNQLSQPDFTTTLQQILK 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++    S + L  +ES ++ N   +   +  +R +G+ + +DDFGT  S L+YL  +PFD
Sbjct: 707 QSGLPASNLTLEITESRIVDNDPVTIQNMQAIRTLGVQIAIDDFGTGYSSLAYLHKLPFD 766

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +   +      +I+ ++I M + ++  I+A+ +        L+++ C   Q 
Sbjct: 767 CLKIDRTFVNKLSPDNLDTSIVAAVINMTRTMKVDIVAEGVETTEQAHMLSQLNCPQAQG 826

Query: 938 SHVASPLGFNS 948
              + P+ F  
Sbjct: 827 FLYSRPVPFAD 837


>gi|172039566|ref|YP_001806067.1| hypothetical protein cce_4653 [Cyanothece sp. ATCC 51142]
 gi|171701020|gb|ACB54001.1| hypothetical protein cce_4653 [Cyanothece sp. ATCC 51142]
          Length = 604

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 206/432 (47%), Gaps = 6/432 (1%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               +QD LT + N+Q F   L+  L  +   ++    ++ +DI+++  IN+  G + G+
Sbjct: 173 QGQNYQDPLTKLANQQLFRQSLSIALKNATLKESP-LALLFLDINQFGAINEKWGYSTGN 231

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  + +R+   ++  DI+AR   ++F I+      S +    +  +  +I  P+ + E
Sbjct: 232 LILQEIAKRLNSSVRGSDIVARWEDDQFVILFPRIRKSQEFEKISQRILNTIEQPLLISE 291

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMI 707
            + ++  S G A +         +L+ AE+ +  Y  K      +  F +    S     
Sbjct: 292 HKFSLEYSQGIAIYPQDGQEVDTLLRTAEINLFNYQQKSVSKRPLSQFVIQDKESKLFKA 351

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           K  L  A+E  +  L Y P + L    +  +EALI+W+HP+ G I  ++F+ +AE+  +I
Sbjct: 352 KTALQKALEQEDFLLYYQPQVNLETVGVSKMEALIRWNHPQLGLIPPNKFVPLAEQTQLI 411

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+  ++L+      I+W++   +P + + +NI+   L D    + ++ ++  T  +P  
Sbjct: 412 CALGEWILKTACSQNIAWQN-LGLPAVTVSVNISPYQLQDPNFVKVVKQILKDTQMNPQW 470

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E  +  NPE +   L  L+++ I+L LDDFG+  S L++L   PFDTVK   S 
Sbjct: 471 LELEVTEEAIFTNPEIAHQTLLELKQLNINLCLDDFGSGSSCLNHLVKFPFDTVKVAQSC 530

Query: 888 MTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    + +     + + + +AK +    +A+ +  +  +  L  + C  +Q    + PL 
Sbjct: 531 VKKLNKDKEQFTVISTALTLAKGLNIRAVAEGVETQQQLNILKNLDCQEMQGYIFSEPLT 590

Query: 946 FNSILKLLKERF 957
                + L   F
Sbjct: 591 PEEASRFLFSHF 602


>gi|311693913|gb|ADP96786.1| sensory box protein/GGDEF domain protein [marine bacterium HP15]
          Length = 618

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 208/433 (48%), Gaps = 6/433 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S   +   +  D+LTG+ N  S  DRL  ++            ++ ID+D+ K IND L
Sbjct: 182 RSKRALEYVSRYDSLTGLANIDSLRDRLNHLVRKIKGRGTGSLALLWIDVDRLKTINDGL 241

Query: 584 GIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G   GD V+  + +R+ E+ L   D LAR+ G+ F +++ +      + +    +   I 
Sbjct: 242 GPQAGDQVIADIGQRLKEIQLAGKDFLARIGGDEFALVIRNYTQPSFLDEVIREIHSRIR 301

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
             I + ++++ V+AS+G   +      S E+L+ AE AMYHAK +GG+    F       
Sbjct: 302 QSIRVSDQDLNVSASVGICHFPGDCHESEELLRGAEAAMYHAKRQGGDRSTLFDSEIQMT 361

Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  ++ +L   +  S L + Y PI+     ++   EAL++W HP+ G +S  EF+ +
Sbjct: 362 ARSRFALESELRETLRTSGLDVFYQPIMDRTGTQLESAEALVRWQHPQRGWLSPIEFLDV 421

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A    ++  +   +L+ +       +D+    P  I +N++++ +L  EL E ++ +   
Sbjct: 422 ARSAGLMYELGACVLKNVCAHWREAKDRNTPLP-TISVNLSAEQILVPELPELVKEICGN 480

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S ++   +E  + G+      +L +L   G  L +DDFGT  S LS L  +PF  
Sbjct: 481 QGMPVSALQFEVTEDSIQGDFSVIGRVLEQLVHAGAELAIDDFGTGYSSLSRLKSLPFSR 540

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +      E   AI  SII +A+ +  +++A+ +  E     L   GCDY+Q  
Sbjct: 541 IKIDRSFINNLPDDENDCAITLSIIGLARGLGLSVVAEGVESEAHESWLFEKGCDYLQGY 600

Query: 939 HVASPLGFNSILK 951
             + PL +   +K
Sbjct: 601 RYSKPLPYPEFIK 613


>gi|27364532|ref|NP_760060.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27360651|gb|AAO09587.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 1039

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/583 (20%), Positives = 222/583 (38%), Gaps = 19/583 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +     + ++               ++   D              +LG    
Sbjct: 461  LFEARDITSRKLMEEKLYKRESNLRNYYEQQPVMMVTLDKNNRIQQVNRFAQQLLGYQPL 520

Query: 444  SMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             M G +          D      R +L       +G  + E   R  D    W+   IRP
Sbjct: 521  EMLGHLLQEFYC----DAQAMTPRQMLLQPTPALQGVWRREIEYRHQDGSAVWIRENIRP 576

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++  +G IL  +G   DI+  K+    +   A  D LT   NR  F   L   L    + 
Sbjct: 577  LT-ESGQIL-IVG--EDISHNKQLARQLEYQAKYDLLTDTFNRNQFDIELKRALREVESH 632

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              +   ++ ID+D+ K +ND  G   GD  +      + E+L    ILARL G+ F ++L
Sbjct: 633  RRVH-AMLYIDLDQLKVLNDTAGHDAGDGAIQFCASMLEEVLPHTAILARLGGDEFAVLL 691

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               N    I      +    + P    + +I +T SIG      +  +   +   A+ A 
Sbjct: 692  KDSNEHTAIGVAKTIIATLSSQPFIWEKVQINLTCSIGIRMIDHTAESPQMVHAQADTAC 751

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIV 736
            + AK +G N  + F + S    R   + +    +  A+ N  L L    II    + + +
Sbjct: 752  HAAKEQGRNRFKLFSLDSEELQRRQQEMESVNLVHDALANDRLELFAQRIIPLSKECDKM 811

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              E L +    +   +S + FM  +E   +   I+  ++ +    + +  D  +      
Sbjct: 812  HFEILTRIRDKQGEYLSPAIFMPASERYNIAHLIDEQVVTKTLDWLEARPDALHQLG-RC 870

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             IN++   + + E    +   ++ ++    ++ L  +E+  M N   +     +++ +G 
Sbjct: 871  SINLSGHSMGNPEFMAFLLDRLTNSVIPCHKLCLEITETAAMKNVALAMDFFAQVKALGC 930

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             + LDDFG+  S   YL  +P D VK +G  +      E    ++R+I  +A+ +    +
Sbjct: 931  LIALDDFGSGLSSFGYLKQLPVDVVKIDGIFVQDMHRNESDHIMVRAINELAQQMGKQTV 990

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            A+ +     I  LT +G DY Q   +  P     ++   ++ F
Sbjct: 991  AEFVENSEIIALLTELGVDYAQGYVIGYPTPLAELVAQWQDEF 1033


>gi|86359032|ref|YP_470924.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86283134|gb|ABC92197.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 523

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/467 (24%), Positives = 219/467 (46%), Gaps = 21/467 (4%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL--- 564
            +LR   +  ++  +  +       A  D+LT +PNR +F  +    L     +D     
Sbjct: 66  SVLRIADLRKEMDVRDAAQAKADWTATHDHLTKLPNRYAFERK---SLPRPTRNDGAEVE 122

Query: 565 ----RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                 T+  +D+D +KK+ND++G   GD +L+ + RRI  L    D + R  G+ F ++
Sbjct: 123 EWDQNVTIFSVDLDGFKKVNDLVGHKGGDVLLIEVARRICALGNA-DCVYRFGGDEFIVV 181

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +   + +   FA  + +++  PI++    + V AS+G+  W        +    A+LA
Sbjct: 182 AFALT-AQREERFARLLIQAVTRPIHIDGFAVEVGASVGYDRWAEGAEPLDDAAHRADLA 240

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK RG NH  +F   +    ++R  ++  L  A+ N  +   Y P+I L   ++ G 
Sbjct: 241 MYEAKSRGPNHYFAFEASMQDRVTERASLETRLRAAIANKAIKPFYQPLIDLKTGQLCGF 300

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W      +I    F+ IAEE  MI A+   +L +   D ++W +Q     + +  
Sbjct: 301 EALARWTGEDSIHIPPPVFIGIAEETGMITALFEDLLAQACSDALTWPEQ-----VMLSF 355

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   + D  L   +  ++S +   P R+++  +E+ ++ +P  + ++L  L   GI +
Sbjct: 356 NVSPVQMEDKLLTSRILKVLSASRLPPQRLEVEITENALIQDPAIAAVILEELHAAGIQI 415

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+ L    FD +K + S +      E++  I+R+++ + +++     A+
Sbjct: 416 ALDDFGTGYSSLAQLARYRFDKIKIDKSFIATYRDDERQEKIVRAMLGLGRSLNIKTTAE 475

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            I     +  L ++GCD  Q       +        +++R   + +T
Sbjct: 476 GIEEHGQLSFLLQLGCDIGQGYLFGKAISAAEASIFIRDRNANLAST 522


>gi|330900691|gb|EGH32110.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 724

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 217/442 (49%), Gaps = 12/442 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL        ++   +  VM ID+D
Sbjct: 280 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQDFCSNGQ-QVIVMFIDLD 338

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       + A
Sbjct: 339 RFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFA-VLSIDTPLQTGTEIA 397

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 398 QRILTAFEQPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 457

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++  EALI+W  P   
Sbjct: 458 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNSGKLLAFEALIRWRMPDGR 517

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++L+ML+R+   +    + ++ PP  + +N +S  +     
Sbjct: 518 IVGPESFLPALEGLRLIGRLDLYMLKRVISILAQ-PENSHWPP--VHVNCSSYSITRPAF 574

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + AL+++   +P R+ L  +E  ++ +PE++RL +  L + G+S+ LDDFG   S L
Sbjct: 575 AAEVLALLAEQNVAPERLCLELTEGALVADPEQARLSMKLLAEQGMSVMLDDFGAGFSSL 634

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G T   +  AI+R+I+ MA++++ T++A+ +     ++ L 
Sbjct: 635 SYVHQYHFSGLKIDKSFIFGLTSSVRSRAIVRAIVRMAESLDLTVVAEGVEDLETLELLR 694

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G    Q  + + PL    + 
Sbjct: 695 EIGATQAQGYYFSEPLPIELLE 716


>gi|254420882|ref|ZP_05034606.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Brevundimonas sp. BAL3]
 gi|196187059|gb|EDX82035.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Brevundimonas sp. BAL3]
          Length = 555

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/566 (23%), Positives = 245/566 (43%), Gaps = 41/566 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   +W W   +D++  T     +LGL   +       ++      DR     +L 
Sbjct: 18  ALAAADTALWVWTPSQDQLRFT-GATRVLGLGPLAPECSGAGFVASTLPQDRSLAEKMLK 76

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                    +    R+R +D    W     R +   +G  LR  G+         +LE  
Sbjct: 77  P--QDEGTEVAVRLRMRGSD-TCMW-----RGVWLEDG--LRAAGVV--------ALETK 118

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              + +D LTG+ +R++F+ R+  +L  +   +     ++V D+D+ +++N+ LG    D
Sbjct: 119 FAGSDRDALTGLLDRRAFITRVGEVLTQAGEYE-----IVVGDVDRLRRLNEALGHERTD 173

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL +L  R+          AR+  + F +I+         +  +  +R+++  P+ +  
Sbjct: 174 LVLSALGSRLAAAFSKEASPARIGEDEFAVIVQKT-----ASHASFRLREALEQPLRVAG 228

Query: 650 REITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
            +I  T SIG            +SE+L+  ELA+  AK  G     ++     S    R+
Sbjct: 229 FDIYPTVSIGAVVVEGGPDAPDASELLRRVELAVESAKGAGRGGSAAYGRALESDSLSRL 288

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A    E+   + PI+ L    + G EAL +W HPK G +   EF+ +  +L 
Sbjct: 289 ALEADLRNAFVRGEIVPFFQPIVNLKTGAVAGFEALARWRHPKRGLVPPDEFLGLTADLG 348

Query: 766 MIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
           M+  + L M+ + AR +  W +       +F  +N++  ++    LCE +  +I ++   
Sbjct: 349 MMNDLGLLMMTQSARQLAEWIQRHPLAGKLFCSVNLSVGEIERPHLCEDVARIIKESGLP 408

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +KL  +E  +M +   +  +L  L+ +G SL LDDFGT  S LSYL  +PFDT+K +
Sbjct: 409 KGALKLEVTEGDIMRDTAHAAEVLQSLKDVGASLALDDFGTGFSSLSYLARLPFDTLKID 468

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +    +      I++S++ + +++   ++A+ +        L    C Y Q    A 
Sbjct: 469 RYFVLTMNKDEGSAKIVKSVVNLGRDLSLEVVAEGVENAELAALLLEAQCHYGQGFGYAP 528

Query: 943 PLGFNSILKLLKERF-----PLVKNT 963
            L        L E       PL + +
Sbjct: 529 ALPAQEAEVYLAESLADGTAPLKQRS 554


>gi|328544671|ref|YP_004304780.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [polymorphum gilvum SL003B-26A1]
 gi|326414413|gb|ADZ71476.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(S) [Polymorphum gilvum SL003B-26A1]
          Length = 750

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 220/546 (40%), Gaps = 12/546 (2%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +    W  D+    VT +  +  +  L  G+    +   L     ++R+     L   + 
Sbjct: 194 ARIGAWRVDLDSREVTWSEQVFALHDLPVGT-PPSLDEALGCFPDHERNRILQTLPKAL- 251

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +  GR+Q+E    +   +   M           G   + IG+  DIT+Q ++   +   A
Sbjct: 252 HETGRIQFEGDFVSFAGRQRRMRFSAEIDDAVAGR-RQLIGVMQDITDQHEAQRQLWQAA 310

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLS---ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             D L+G+ NR  F   L    + +    T       ++++D+D +K IND  G   GD 
Sbjct: 311 HVDPLSGLANRTWFQQALAGAFEAALGAQTGAPRDLALLLLDLDGFKDINDSFGHQAGDA 370

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           V+     R+          ARL G+ F +++ +      +   A A+   +  PI   E 
Sbjct: 371 VIRETAARLRSEFGQDAFCARLGGDEFAVLMPAAGEGQDLLARAEAVLARLRAPILFQEE 430

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE- 709
            + V  SIG A   +   T   +L+ A++A+Y  K  G      F            +  
Sbjct: 431 VLHVAGSIGIARAPADADTPDALLRCADIALYTVKRSGRGAAGVFCPEYSSVFDARRQAI 490

Query: 710 -DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+    +   Y P+I L     VG EAL++      G +   +F     +   ++
Sbjct: 491 DTVRAALRTDRVVAHYQPLICLHSGAYVGAEALVRLQTGDGGLLGPEQFWPAFADPECVR 550

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++  + ER+  D+  W+       + + +N +                ++        +
Sbjct: 551 QLDEAVFERVLSDLAGWQAAGIETGV-VSLNASRFWFQTKGFARRFVDALAARGIPAESL 609

Query: 829 KLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            +  +ESV++  +       L  L + G+S+ LDDFGT  + L++L   P D++K + S 
Sbjct: 610 CVEVTESVLLNEDSRSVARALSILSEAGVSIALDDFGTGFASLTHLRDFPIDSIKIDRSF 669

Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++G     +   ++++I+ +++++    +A+ +      + L+ +GC + Q    A P+ 
Sbjct: 670 ISGLGAKPENTVVVKAIVDLSRSLGMNTVAEGVETGAASEFLSAIGCSHAQGFLYARPMA 729

Query: 946 FNSILK 951
            ++   
Sbjct: 730 PHAFAA 735


>gi|238025502|ref|YP_002909734.1| diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
 gi|237880167|gb|ACR32499.1| Diguanylate cyclase/phosphodiesterase [Burkholderia glumae BGR1]
          Length = 995

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/799 (19%), Positives = 286/799 (35%), Gaps = 33/799 (4%)

Query: 164 EISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFA 223
               P              +T   F     +I G    LA+F+ +  ++NR    I   A
Sbjct: 189 RYGGPAYLTASRLSRAALVETRLQFERNASLISGGLLTLAVFIFVIALINREWTYIVFAA 248

Query: 224 MAWVV--LGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
                  L   ++ F        LP   + + R  +                        
Sbjct: 249 WLLGNQRLAANALGFDDAWLAHLLPPAWIDLIRQLTFAIYYVVTTSLFVRLFRRELAQLP 308

Query: 282 VGYITFSGIACIAILFCMSFYYPMV--TASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
           + ++         +L  ++F  P       +  +  A +++                 + 
Sbjct: 309 LRWLLKGVRVGGGVLLLLAFTLPYRWFLPPLWTLAGAGMLVLLLLLGQMLWRVRTRTMIW 368

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
              +  ++    +    A              V   +   +L  F + +   A     + 
Sbjct: 369 YAASLSVVLFAILSEVFAAALGTPLLFGGLNPVVTSLAASMLAAFAIAEQQRADRQRRRE 428

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
             SD  R + A+  +   ++  D         P + ++L LA  +     R W       
Sbjct: 429 SESDL-RNTYAL--TPIGLFTLDPAGRFTRANPALLSMLSLAQDAY--RTRYWTECF--- 480

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               +R + +       G +  E    AA         R    ++ +G    Y G   ++
Sbjct: 481 GASAWRRLCELARQGGAGAI--EIAGPAAAGT---ARRRYSVRASFSGGA--YQGSIEEV 533

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+ ++LE +   A  D+LTG  NR+    RL +++   A       +V  +D++ +K I
Sbjct: 534 TERAEALERLHFLADHDSLTGALNRRGIERRLASLIGTRAR-----GSVAYVDLEPFKVI 588

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND+ G A GD+VL  L  R+   L     + R+ G+ F  +    +     A        
Sbjct: 589 NDMFGHAAGDEVLCQLVARMTGCLAPRGAIGRIGGDEFVCVFPEIDVDEAAALCEQLAET 648

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
             A P  +  R + V ASIG        ++  +M+ +A+LA   +K  G   +  +R   
Sbjct: 649 IGAQPYQIGSRTVRVRASIGVVECLP-AMSVHDMIAHADLACRESKRDGTGRIIVYRSDS 707

Query: 699 ---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISS 754
                R   + +   L        L L   PI+ +    E +  E L++        +S+
Sbjct: 708 RDFERRMRDLALIGTLSEEAVPEGLVLAMQPIVSVTHAGEALDFEVLLRLRREDGTLLSA 767

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+   E L  I AI+L++L  +   I   +        FI +N++   L D  +   M
Sbjct: 768 ADFIDAVERLGTIGAIDLWVLSSVLAWIERNQATLAKTR-FICVNLSGASLNDERIVAEM 826

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +         + L  +E+V + + + S+  + R   +G+ + LDDFG   +   YL 
Sbjct: 827 FRRLEAHASIAHLLCLEITETVALHDLKTSQHFVARAHDMGVRIALDDFGAGHTSFKYLK 886

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K +G  +         IAI+ SI+ +A+N+    IA+ +      + L  +G 
Sbjct: 887 ALSADALKIDGEFVRSMCEHPADIAIVESIVDLARNLGMRTIAEWVEDTRTFEALRAIGV 946

Query: 933 DYIQDSHVASPLGFNSILK 951
           DY+Q   V  P+    IL 
Sbjct: 947 DYVQGYAVGRPVPPEQILA 965


>gi|92115148|ref|YP_575076.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
 gi|91798238|gb|ABE60377.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 777

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/455 (24%), Positives = 216/455 (47%), Gaps = 20/455 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K   + I   A++D +TG+ NR+S L RL  ++  +  +      ++ ID+D +K +ND
Sbjct: 326 RKAQNQEIKRLAYEDPVTGMANRRSLLARLHELVGRANHEQ--AAAILFIDLDDFKLVND 383

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-------------SL 628
            LG  VGD VL ++  RI   L+  D++AR  G+ F ++++ +               + 
Sbjct: 384 ALGHKVGDRVLQNVAWRINNTLREGDLVARQGGDEFIVVMMDDPRYSPSVAEDVRQRLAR 443

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              + A  + +++  P  +      + ASIG + +         ++  A++AMY AK  G
Sbjct: 444 GAEEMARRISRTLRQPFEINGYAHRLGASIGVSLFPYLSDDPETVIDQADMAMYAAKRSG 503

Query: 689 GNHVES-FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            + V     +++ R  R+ ++  L  A+   EL L Y P+  L    IV +EAL++W   
Sbjct: 504 QHTVFFSPELATGRQQRLSLETKLNHALAAGELQLHYQPVWELDSGRIVAVEALLRWQDA 563

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   IS + F+ +AEE+ ++ A++ ++++  AR + SWR+      + + +N++   L  
Sbjct: 564 EGEMISPATFIPVAEEIGLMGALSKWVIDEAARQLESWRETGLE--LTMGVNLSVSQLQG 621

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +    +   +  +   P    L  +E  VM +PE     +  L   G  L LDDFG   
Sbjct: 622 ADAARKIHDQVVSSGSDPQWWLLELTEEAVMQSPEAVMEAMRLLDGAGFRLALDDFGRGY 681

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L  +P  T+K +   +    E      ++R+++ +A+     ++A+ I      +
Sbjct: 682 SSLARLQAMPLHTLKIDKLFVDSLREDTPDDRVVRTVVELARQFSLRVVAEGIEHAEQAR 741

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           +LT MGC + Q   V+  +  + I  L++   P  
Sbjct: 742 QLTAMGCSFGQGFWVSPAVAASEIPSLIRRAAPPA 776


>gi|311898480|dbj|BAJ30888.1| hypothetical protein KSE_51100 [Kitasatospora setae KM-6054]
          Length = 514

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 222/470 (47%), Gaps = 29/470 (6%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            L  + +A  +   + + +        D LT +PNRQ+ L      L    T+      +
Sbjct: 34  PLFAVPLAVLVAAWRIARDRARDQ-LTDPLTDLPNRQALLIATQEALARHETEPGHGVGL 92

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--------------------- 607
           +++D+D+++ +ND LG   GD +LV + RR+   L+                        
Sbjct: 93  ILLDLDRFRSLNDALGHTAGDRLLVHIARRLHRALRTGAGHPRDGEDATVLPPPVGRGER 152

Query: 608 -ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            ++AR+ G+ F ++L    ++  +   A A+   +A PI L    + + AS G  ++ + 
Sbjct: 153 PVVARMGGDEFAVLLPGVGDTEVLERIAQALIAELAAPIRLDGLLLVLEASAGVCAYPTH 212

Query: 667 KITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
              +  +L+ A++AM HA+H R G              R+ +  DL  A+E SE+ L Y 
Sbjct: 213 APDAESLLRRADVAMGHAQHSRSGVECYDEARDLDTPYRIGLLGDLRRAIEMSEVQLHYQ 272

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +   D  +VGLEAL++WD    G ++  EF+ +AE   ++  +  ++LE     I  W
Sbjct: 273 PKVAF-DGSVVGLEALVRWDRAGQGRVAPDEFIALAESSGLMPRLTDYVLESAVGQIARW 331

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           R Q  M P  + +N++ +D+L+      +   +++     + ++L  +E +++ +  R+ 
Sbjct: 332 RHQGLMVP--VAVNVSPRDVLNPGFAARVAGHLTRHQVPAAALQLEITERLLLDDSRRAA 389

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
             L  LR+ G+ ++LDDFGT  S L  L  +P   +K + S ++     +   A++R  +
Sbjct: 390 DTLAELRRYGVRMSLDDFGTGHSSLVRLRSLPVGELKIDRSFVSRMVADDHDAAVVRCSV 449

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +A ++  T++A+ +  +   + L  MG D +Q   V++ L  +     L
Sbjct: 450 ELAHSLGLTVVAEGVEDDETWERLHDMGVDAVQGWLVSAALPADQATAWL 499


>gi|258405029|ref|YP_003197771.1| diguanylate cyclase/phosphodiesterase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797256|gb|ACV68193.1| diguanylate cyclase/phosphodiesterase [Desulfohalobium retbaense
           DSM 5692]
          Length = 472

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 197/443 (44%), Gaps = 6/443 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  ++ ++K + + +      D+LTG+ NR   L RL    + +  +   +  ++ +D+
Sbjct: 31  ALRREVRKRKDAEKHLEIATQFDDLTGLANRNLALRRLEQATEKARLEGG-KAALLYLDL 89

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             +K IN+  G   GD +L  + +R+  +    D +AR++G+ F  + +       +   
Sbjct: 90  IDFKAINNAFGYECGDCILRDIGQRLQSISGASDTVARITGDEFVFLQLDIQGHDSVYSL 149

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             A+++ +  P    + E+ +   +GF+ +        E+ + A +A+ +AK    N + 
Sbjct: 150 LAAIQEVLHRPFQTKQTELLLNFCLGFSIFPDWADNWQELSRQARVALSNAKGSRENKIH 209

Query: 694 SFRV-SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           ++       +D+  I ++   A+ + E  L Y PI+ L   ++V  E+L++W  P    I
Sbjct: 210 AYDPAQDKSTDQFGIIQETKKALRHDEFRLHYQPIVDLKSAQVVAYESLLRWQKPDR-MI 268

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELC 811
               F+ + E   ++  I  F+L      + +W    +      + +NI++  L      
Sbjct: 269 PPGAFLPVIEHTEIMTEIGDFVLSTACEQMNNWLMNLSTQHAFKLSVNISANQLASENFP 328

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              Q+L      +  R     +E+ V+ N + ++ +L     +G+ + LDDFGT  S L 
Sbjct: 329 YEGQSLFEAYRLATQRFIFEVTETAVIENIDHAKEVLTEFANLGVEIWLDDFGTGYSSLL 388

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +P   VK + + +TG  +       LR++I ++ ++   ++A+ +        L  
Sbjct: 389 ALRELPISVVKIDKTFVTGIDQPDFNPEFLRALINLSHDLGKRVLAEGVETRAQRDILIG 448

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
            GCD  Q  +   PL  +  + L
Sbjct: 449 YGCDLAQGFYFGHPLPPSEAVPL 471


>gi|254785286|ref|YP_003072714.1| PAS sensor diguanylate cyclase and phophodiesterase [Teredinibacter
           turnerae T7901]
 gi|237687403|gb|ACR14667.1| PAS sensor diguanylate cyclase and phophodiesterase [Teredinibacter
           turnerae T7901]
          Length = 728

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/724 (16%), Positives = 261/724 (36%), Gaps = 16/724 (2%)

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            +     L ++            ++F               +        ++ L   +  
Sbjct: 2   YSTAPLLLHLFNGLIIALALLLGVLFFKREQDLAVHRFNGPFKLIYLGVTLSSLSFFADS 61

Query: 303 YPMVTASIARITLASIVLYYTYFIIYH--GMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
                       +    +Y+   + Y    +  +    + I   I +    +    A  +
Sbjct: 62  LHSAGLLHLPGPMVYGRIYFWLHMGYVTGSVITFLGLAIFINRVIPLSSRQVLRLAAARE 121

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY-FSQGIFSDGERQSLAVLGSGDIVW 419
           +L     + A         + I    +Q VL       + +    ++       S  +  
Sbjct: 122 QLTASNDELARTIATRNKELEINNHTLQRVLEEQQDSRRALTESEQKFRTFFDESPAVFV 181

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                          A  LG     + G    +   +   D       ++       G  
Sbjct: 182 SLGRDHRIKEINRYGAAALGYGPKELIG--ETFETIVSPEDYSTQEHYIEDGFNSAEGTS 239

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E R+   D Q  W  +    +++ + +    + +  DI+E K+  E +   A  D+LT
Sbjct: 240 EIELRLLRNDTQSLWTKVSASLVTSPDREDT-LLLVCQDISESKELAESLYYQARHDDLT 298

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR++  + +   L++ +        ++ +DID+ K +ND  G   GD+ +  L +RI
Sbjct: 299 GLYNRRALENFIAEKLEIMSPVGKP-LALIFMDIDQLKVVNDTCGHRAGDEYIRQLVQRI 357

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
           GE     D  AR  G+   ++L   + +  +    +A   +     +  ++    + S+G
Sbjct: 358 GEHHGHFDFFARAGGDELAMVLSDTSPTEAVEMAELARNIAEDFSFSWQDQSFRQSLSVG 417

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAV 715
            A  + +  + ++++  A+ A Y AK +G N V     +          ++    L  A+
Sbjct: 418 VALTSRNIRSLTDIMAAADAACYTAKQQGRNRVVVQEDTPELLDANRSEMLWVSRLQTAL 477

Query: 716 ENSELYLVYHPIIRLMDEEI--VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
                 L + PI  L       +  E LI++      + +   F+  AE   +   I+L+
Sbjct: 478 MRDRFELYFQPICDLRHRHSGYIHYEVLIRYVDDDGTHRTPDNFLPAAERFGLTNQIDLW 537

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L      +               IN+++  L  ++    ++ L+    +  +++    +
Sbjct: 538 VLTTTLDYLDRHPAHTRALSC-CSINLSAHSLASHQSRSAIKQLVMTAQFPKNKLCFEIT 596

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+  + N + +   +  L+ +G    LDDFGT  S   YL  +  D +K +GS +     
Sbjct: 597 ETNAIHNLQEAVEFVNDLKILGCRFALDDFGTGFSSFGYLQNLDVDYIKIDGSFIRDIIN 656

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   A+++++  + + +    IA+ +  +  I EL  M   Y Q   +A P+  + + +
Sbjct: 657 NEVGRAMVKAMNAIGRELNIGTIAEYVESDEIIAELIHMDVAYGQGFALAKPMPVSMMEE 716

Query: 952 LLKE 955
             +E
Sbjct: 717 YYRE 720


>gi|300907297|ref|ZP_07124948.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300400933|gb|EFJ84471.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|315253469|gb|EFU33437.1| PAS domain S-box [Escherichia coli MS 85-1]
          Length = 807

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L   + N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKETISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|167845066|ref|ZP_02470574.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei B7210]
          Length = 611

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/557 (21%), Positives = 244/557 (43%), Gaps = 20/557 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D      +L    
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRELIPEQDTATLDALLARA- 110

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +    +  +    + + + +R + + +  I  +   A D++  +     +   
Sbjct: 111 SQTGDVEKATLCLVKS--LTYPLDVEVRAVRSRHHGIDGFAIAAFDVSSWRAIEARLTYE 168

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +L
Sbjct: 169 LHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDALL 227

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLLE 649
               +R+  L    + LAR++ ++F ++L               A  ++ ++  P     
Sbjct: 228 RDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAALDAAEALARQLQTAVQRPYAYDG 287

Query: 650 REITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSFR 701
           + + ++AS+G A +             S +L+ A+ A+  AK  GGN             
Sbjct: 288 QAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPAD 347

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W HP  G ++ + F+ +A
Sbjct: 348 AERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWHHPVHGLVAPATFIPLA 407

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  T
Sbjct: 408 ESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKLT 466

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   +
Sbjct: 467 GIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAKL 526

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ   
Sbjct: 527 KIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGWL 586

Query: 940 VASPLGFNSILKLLKER 956
           V   L  + + +  + +
Sbjct: 587 VCQALPSDELAQRFEAQ 603


>gi|255305513|ref|ZP_05349685.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 1032

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/573 (21%), Positives = 249/573 (43%), Gaps = 36/573 (6%)

Query: 403  DGERQSLAVLGSGDIV---WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIH 457
                + LA      I+    D +++   +  +     I             +++    IH
Sbjct: 477  SKAYEKLAYNTYDIILSICIDTNLIT-PIYQSES--NIFSFPIKENLEKTFSYIKKHLIH 533

Query: 458  INDRDNF-----RTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNG--- 507
             +D   F        LDS    ++    L +E+R    D +++W +I +  +S+ N    
Sbjct: 534  PDDIILFNDNHLLKSLDSLNNSKQDDLELNFEYRRLGIDKKYYWALIYMLKISSKNKLGE 593

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                 +    +I    +  +        D LTG+ N +SF ++++ +L       + R  
Sbjct: 594  KQTHILVAIKNIDYLMQLHKNQK-----DTLTGLYNYESFCEQISLML---KRYPDKRYA 645

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++++DIDK+K IND+ G+  GD  L+ +   I + +    I  R+  + F I   S ++ 
Sbjct: 646  IIMMDIDKFKVINDIYGVRGGDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDR 705

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              I      ++ S+       + E  +    G      + I  +   + A  A    K +
Sbjct: 706  D-IHKVIYNIKNSLNR----KKFEYMLVPCFGVYRILDNHIPITNACEMAGYAHKKVKKQ 760

Query: 688  GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              N+   +     +   +   ++ ++  A+EN + ++   P   L   +IVG EAL++W 
Sbjct: 761  SINNYIFYDDTIRNDALEEKQMEREMEYALENGQFHVYLQPKYNLNANKIVGAEALVRWV 820

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G I   +F+ + E+   I  +++++ E++   I  W D     P+ I +N++   L
Sbjct: 821  HPEKGIIPPIKFISLFEKNGFIIRLDMYVWEQVCSLIRKWID-LGEEPVPISVNVSRLHL 879

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +    E + +LI+K     S ++L  +ES+ + N +    ++  LR  GI L +DDFG+
Sbjct: 880  HNPHFKEIVLSLINKYSIPKSFLELELTESLFIKNIKLFTKIIADLRMDGIVLNMDDFGS 939

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S L+ L  I  DT+K +       G T++   +L+  I MAK+++  ++A+ +  +  
Sbjct: 940  AYSSLNMLKNINIDTLKIDCGFFNEEGITDREKIVLKHTIAMAKDLDMDVVAEGVETKEQ 999

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + L  + C  IQ  +   P+      KLL ++
Sbjct: 1000 AEFLVSLDCVVIQGYYYCKPIPSADFEKLLYQK 1032



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 519 ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +TE KK      +   ++ D LTG  NR  ++  +                V+ +DI+  
Sbjct: 274 LTEMKKRKVENKLNYMSYYDFLTGAYNRNKYIKYIDNF----QKGKVKSIGVVFVDINGL 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD  +VS    I +     + + R+ G+ F ++    +           
Sbjct: 330 KDINDNFGHANGDSAIVSACVIIKKYFHSYN-VYRIGGDEFVVLCEDIS-----KQLFEE 383

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   ++        E+  + ++G + W+   I   +++K A+  MY  K R       + 
Sbjct: 384 LVSWLSEEFK---DEMIYSVAVG-SIWSDDNIDIHKLIKVADERMYQDKKR------YYN 433

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +  R++ + +  DL  +  N           +   D  I G        + K    +  
Sbjct: 434 KNKLRNNEMKVISDLADSTNNILFKHKELVDKVYFDDLMIKGYSK----AYEKLAYNTYD 489

Query: 756 EFMLIAEELCMIKAI 770
             + I  +  +I  I
Sbjct: 490 IILSICIDTNLITPI 504


>gi|89092552|ref|ZP_01165505.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92]
 gi|89083064|gb|EAR62283.1| hypothetical protein MED92_14638 [Oceanospirillum sp. MED92]
          Length = 783

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 211/442 (47%), Gaps = 14/442 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +   S +     +  D LT +PNR +F +  +  L  +    +   +++ ID+D +K +N
Sbjct: 328 KLHNSYQESHIQSRTDALTRLPNRAAFYETASIKLGEAERKQS-NISIIYIDLDNFKFVN 386

Query: 581 DVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLKIADF 633
           D  G  +GD++L ++  R+  ++          + + RLSG+ F  IL +     K  + 
Sbjct: 387 DKYGHEIGDELLKAVAIRLAHIISIKWKHTYSDEYVYRLSGDEFIAILPNAGTV-KAQEL 445

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +  + K  A   +       VTASIG A++     T S+++ NA+LAMY AK  G N + 
Sbjct: 446 SQTILKQFADGYHFELGHFPVTASIGIATYPQDGHTLSQLISNADLAMYQAKKSGKNKLA 505

Query: 694 SFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +     + DR    I+  L     +SEL L Y PII   + ++ G E L++W     G 
Sbjct: 506 IYSKELAKKDRQAKEIESRLKDIDFDSELSLFYMPIID-RENQVKGCEVLLRWHSEDLGF 564

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S + F+ IAE   M +AI+L+++E   +       +     + + INI+S ++      
Sbjct: 565 VSPALFIPIAESSGMFEAIDLWVIEEAFKSYPQLIQKFGAH-LELSINISSAEIGSERFI 623

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++AL  +   +P    +  +E+  +   + +   L  LRK+G ++ +DDFGT  + L 
Sbjct: 624 RTLEALAKEYQINPDNFVIEITETFSIEQNKAALNWLSELRKLGFNIAIDDFGTGYTSLM 683

Query: 872 YLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            +   P D +KF+  L+      ++ A+++++I +     T ++A+ I  +  +  L + 
Sbjct: 684 QMLDYPVDFIKFDRELVERLIKPEKHALVKALIDLCHFQGTRVVAEGIETQYHMDILHQA 743

Query: 931 GCDYIQDSHVASPLGFNSILKL 952
           GCDY Q   +A P+     L  
Sbjct: 744 GCDYQQGFFIAKPMPLTEFLNW 765


>gi|329851185|ref|ZP_08265942.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840031|gb|EGF89603.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 665

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/435 (22%), Positives = 205/435 (47%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E     A  D LT +PNR+SF   L   L +      +   + +ID+D +K IND+ 
Sbjct: 227 RLREEAQMLADCDVLTALPNRRSFFRELERNLAVLRAR-KVPFDLALIDLDGFKPINDLY 285

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +LV +  R+ ++     + AR+ G+ F I+L  + +  ++  F   +  ++  
Sbjct: 286 GHSVGDHLLVEVGERLRQICGITGLPARMGGDEFAIVLAGQRSEDELKAFGAQLCDALRQ 345

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             +L      ++ S+GF     + +++S++L+ A+ A+Y+AK         F        
Sbjct: 346 TYHLSGVNANISGSVGFVHCDDASVSTSQLLERADYALYYAKQNMRGAPVIFTERHEAEM 405

Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               ++ + L  +  ++E  +V+ P + +++   V  EAL +WD  + G +    F+  A
Sbjct: 406 RDFSLVDQTLRGSDLDAEFSIVFQPQVDIVENRTVSFEALARWDSARLGVVRPDIFIKAA 465

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I   +L +  + +  W ++     +    N++++D+        +   + ++
Sbjct: 466 ERSGLITQITQILLSKALKHMAEWPEE-----MRASFNLSARDIRSATAIANICDTVERS 520

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI+   +E+ ++ + +++   L RL+ +G  + +DDFG+  S L YL  +P D +
Sbjct: 521 GIDPRRIEFEITETAMLTDFDQACEALSRLKVMGARIAIDDFGSGYSSLGYLHRLPVDKI 580

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +         + I+++II + +N+    + + +  E ++  L ++   YIQ   
Sbjct: 581 KIDRSFVVQLVKHGTTLKIIKTIIDLCRNLHLECVVEGVETEAELNNLRQVRARYIQGYV 640

Query: 940 VASPLGFNSILKLLK 954
            + P+    +   L 
Sbjct: 641 FSKPMPAGEVAGFLA 655


>gi|268679854|ref|YP_003304285.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617885|gb|ACZ12250.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 755

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 224/442 (50%), Gaps = 11/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+    ++  A  D+LT +PNR  F   +   +  +A       +++ ID+D +K +N
Sbjct: 320 EEKR-RADLIFQATHDSLTKLPNRAYFQQCMNDWIYENA----PPFSLLYIDLDHFKNVN 374

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L+  ++R+  +     I  R  G+ F I+L    +  ++   A  + + 
Sbjct: 375 DSFGHHFGDLILIEFSKRLLHVKATQSIAIRQGGDEF-ILLSYLVDEQELLAQAEKIMQE 433

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSS 699
           ++ P  + +    + ASIG A +     T   +L+ +++AMY AK H+    + +  +  
Sbjct: 434 VSKPYVIGQFNFAIGASIGIAKYPEHGHTLDMLLRASDIAMYEAKKHKNSVRLFAPSMQE 493

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +RV ++++L  A+  +ELY+VY P +      + G+EAL++W+  + G +   +F+ 
Sbjct: 494 GYLNRVTLEQNLRQALGKNELYMVYQPQMTHE-GVMYGVEALVRWNSKELGIVPPDKFIP 552

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +  F+++R   ++ S++++       + +NI+ K  ++    E +   I 
Sbjct: 553 VAEASGLMPKLGDFIMKRTLEEMKSFQEEMGF-SFQVSLNISIKQFMEANFLEHLTHEIE 611

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               +   + L  +ES+ + + E    LL ++R +G+S+++DDFGT  S LS L  +P D
Sbjct: 612 TIKLTNIVLCLEITESLFIEDIEYLLPLLQKIRSMGLSISMDDFGTGYSSLSILRKLPID 671

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    E      ++++II + KN+E  I+A+ +  +    +L R+GCD  Q 
Sbjct: 672 ELKIDKSFVDTLIEDITAEKMVQNIISIGKNLELAILAEGVETKEQEVKLKRLGCDRFQG 731

Query: 938 SHVASPLGFNSILKLLKERFPL 959
              A PL +  +   +K +  +
Sbjct: 732 YLYAKPLNYEDLKLFVKAQKTV 753


>gi|308095652|ref|ZP_07663352.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308125930|ref|ZP_07663575.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           K5030]
 gi|308089192|gb|EFO38887.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308111452|gb|EFO48992.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           K5030]
          Length = 494

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 213/441 (48%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D+LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 52  ILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRI-----QSGDPFSVILFDVVNFKQ 106

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ + LK  D + R+ G+ F I+  S        +   ++ 
Sbjct: 107 VNDAMGHFCGDQLLIQIGQRLQDKLKGSDKIFRVGGDEFVILTSSACEKTG-TELIESLD 165

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    I++  ++K+A++AMYHAK  G         +
Sbjct: 166 CALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDM 225

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 226 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDF 285

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 286 IPIAERSNQVHNITMWVLGQVEKDLKTFIEKG--IKLPVHVNLSAKDLSSNLLFHRLEKL 343

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 344 LENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 403

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 404 VDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDII 463

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 464 QGYLFCPALPLNEVINWVNEH 484


>gi|134100903|ref|YP_001106564.1| sensory box protein [Saccharopolyspora erythraea NRRL 2338]
 gi|291003483|ref|ZP_06561456.1| sensory box protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133913526|emb|CAM03639.1| sensory box protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 710

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/574 (18%), Positives = 221/574 (38%), Gaps = 17/574 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                       S   + +     +   +  +D     +     +  +L      +   +
Sbjct: 128 TRDESTAQVREHSSRRQFTDLFELASTGIALFDDAGRLLDANVALTDLLACPLPQLRDKM 187

Query: 450 RNWLPYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMSNSN 506
                ++H +D  N                      RV   ++ +     +  +   ++ 
Sbjct: 188 D--RDFLHPSDEGNGGLLPSTSPLRSPGGVGGPIPHRVLTTSEGEPVLCQVHSKASVDAE 245

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G    ++ I +D+TEQ +  E +   A  D  TG+ NR+ F + L+++L     + +   
Sbjct: 246 GG-RSWLAIFHDVTEQVRRTEVLSFQATHDGTTGLLNRRGFEEVLSSLLS---PEADGEV 301

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+  D+D +K++ND LG   GD++L ++  R+   L      AR   ++F I+    + 
Sbjct: 302 AVLFCDLDNFKRVNDALGHEAGDELLAAVADRLTTELPPKCTAARFYADQFVIVCPDVDA 361

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM--YHA 684
                     +     M + L E  + V+AS+G         + +E+L+ AE AM     
Sbjct: 362 VGGSDALTKHVGNVFRMVVPLREWRVHVSASVGSTVVEDHGTSITEILRLAEAAMIENRF 421

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           +  G   +             ++ ++  L  A+ +  + L Y PII   D  +V  EAL+
Sbjct: 422 RSHGRLQLVQSSSRPAEPHTDQLTLEHHLREALADDRIDLHYQPIID-NDGAVVMAEALL 480

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P+ G ++    + +AE   ++  ++  +L +     +  R      PI + +N++ 
Sbjct: 481 RWSDPELGPVTPDVALGVAERGGLLTGLDRCVLRKALHTSVGLRRPDGR-PIAVAVNLSG 539

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                 E  E + A + +    P  + L   E+V+       +  + RL   G+   +DD
Sbjct: 540 LHPDRPEFVEEVLAAVDEAGADPENLVLEMVETVLAELGPTPQRAVRRLVDAGVRFAMDD 599

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+ L  +P   +K +   +         + I R++  +A+ +    IA+ +  
Sbjct: 600 FGTGYSSLARLRELPTQILKLDRLFVGQVCFDPANLGITRAVAELARTMRRQCIAEGVEN 659

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                 L  +G D  Q  + + PL  +     L 
Sbjct: 660 ATQHHLLRAIGIDAYQGYYFSPPLPPDDFRDFLA 693



 Score = 45.7 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 7/122 (5%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN--FRTILDSFVGY 474
            ++  D      +       + G  S  + G         + ++     +          
Sbjct: 31  AIFSLDASGRVASWNAGAQRVKGYRSEEIIGK---DFSVFYPHELAESGYPQWELEQAAQ 87

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +   +RVR  D    W  + I    + +G +  +I +  D +  +          F
Sbjct: 88  DGFFIDRGWRVR-KDGSRFWAHVVITAQRSPDGVLDGFIKVTRDESTAQVREHSSRRQ-F 145

Query: 535 QD 536
            D
Sbjct: 146 TD 147


>gi|126698103|ref|YP_001087000.1| putative signaling protein [Clostridium difficile 630]
 gi|115249540|emb|CAJ67356.1| putative signaling protein [Clostridium difficile]
          Length = 1032

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/573 (21%), Positives = 249/573 (43%), Gaps = 36/573 (6%)

Query: 403  DGERQSLAVLGSGDIV---WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIH 457
                + LA      I+    D +++   +  +     I             +++    IH
Sbjct: 477  SKAYEKLAYNTYDIILSICIDTNLIT-PIYQSES--NIFSFPIKENLEKTFSYIKKHLIH 533

Query: 458  INDRDNF-----RTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNG--- 507
             +D   F        LDS    ++    L +E+R    D +++W +I +  +S+ N    
Sbjct: 534  PDDIILFNDNHLLKSLDSLNNSKQDDLELNFEYRRLGIDKKYYWALIYMLKISSKNKLGE 593

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                 +    +I    +  +        D LTG+ N +SF ++++ +L       + R  
Sbjct: 594  KQTHILVAIKNIDYLMQLHKNQK-----DTLTGLYNYESFCEQISLML---KRYPDKRYA 645

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++++DIDK+K IND+ G+  GD  L+ +   I + +    I  R+  + F I   S ++ 
Sbjct: 646  IIMMDIDKFKVINDIYGVRGGDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDR 705

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              I      ++ S+       + E  +    G      + I  +   + A  A    K +
Sbjct: 706  D-IHKVIYKIKNSLNR----KKFEYMLVPCFGVYRILDNHIPITNACEMAGYAHKKVKKQ 760

Query: 688  GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              N+   +     +   +   ++ ++  A+EN + ++   P   L   +IVG EAL++W 
Sbjct: 761  SINNYIFYDDTIRNDALEEKQMEREMEYALENGQFHVYLQPKYNLNANKIVGAEALVRWV 820

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G I   +F+ + E+   I  +++++ E++   I  W D     P+ I +N++   L
Sbjct: 821  HPEKGIIPPIKFISLFEKNGFIIRLDMYVWEQVCSLIRKWID-LGEEPVPISVNVSRLHL 879

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +    E + +LI+K     S ++L  +ES+ + N +    ++  LR  GI L +DDFG+
Sbjct: 880  HNPHFKEIVLSLINKYSIPKSFLELELTESLFIKNIKLFTKIIADLRMDGIVLNMDDFGS 939

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S L+ L  I  DT+K +       G T++   +L+  I MAK+++  ++A+ +  +  
Sbjct: 940  AYSSLNMLKNINIDTLKIDCGFFNEEGITDREKIVLKHTIAMAKDLDMDVVAEGVETKEQ 999

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + L  + C  IQ  +   P+      KLL ++
Sbjct: 1000 AEFLVTLDCVVIQGYYYCKPIPSADFEKLLYQK 1032



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 519 ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +TE KK      +   ++ D LTG  NR  ++  +                V+ +DI+  
Sbjct: 274 LTEMKKRKVENKLNYMSYYDFLTGAYNRNKYIKYIDNF----QKGKVKSIGVVFVDINGL 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD  +VS    I +     + + R+ G+ F ++    +           
Sbjct: 330 KDINDNFGHANGDSAIVSACVIIKKYFHSYN-VYRIGGDEFVVLCEDIS-----KQLFEE 383

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   ++        E+  + ++G + W+   I   +++K A+  MY  K R       + 
Sbjct: 384 LVSWLSEEFK---DEMIYSVAVG-SIWSDDNIDIHKLIKVADERMYQDKKR------YYN 433

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +  R++ + +  DL  +  N           +   D  I G        + K    +  
Sbjct: 434 KNKLRNNEMKVISDLADSTNNILFKHKELVDKVYFDDLMIKGYSK----AYEKLAYNTYD 489

Query: 756 EFMLIAEELCMIKAI 770
             + I  +  +I  I
Sbjct: 490 IILSICIDTNLITPI 504


>gi|331662968|ref|ZP_08363878.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli TA143]
 gi|331058767|gb|EGI30744.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli TA143]
          Length = 778

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 277 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 321

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 322 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 379

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 380 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 434

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 435 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 491

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 492 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 551

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 552 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 610

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 611 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 670

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 671 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 730

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 731 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 776



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 97  YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 156

Query: 447 G-PIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G    + L       ++R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 157 GMQPDSLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 211

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE++K  +
Sbjct: 212 DVLAHLQNLVMTFSDITEERKIRQ 235



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            +   + +   P    + G     + G   + L  I  + R      +       + R++
Sbjct: 7   INENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIRHNREGGKARVE 64

Query: 481 Y---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               E ++   D    W    +  + ++ G +  Y+ +  D + +    E     
Sbjct: 65  GMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQL 117


>gi|293414841|ref|ZP_06657484.1| cAMP phosphodiesterase [Escherichia coli B185]
 gi|331652851|ref|ZP_08353856.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli M718]
 gi|291432489|gb|EFF05468.1| cAMP phosphodiesterase [Escherichia coli B185]
 gi|331048949|gb|EGI21021.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli M718]
          Length = 807

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|197333927|ref|YP_002154860.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197315417|gb|ACH64864.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 845

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 204/436 (46%), Gaps = 13/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K+S + +      D+LT + +R    + ++  +         +  ++   I+ ++ IND
Sbjct: 411 LKRSFQELQDKVTYDSLTHLYSRTGLDNVISPAITD-------KSGLISFTINDFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            +G   GD +LV ++ R+    +  +I +AR+ G  F +     ++  ++ ++A  ++  
Sbjct: 464 SVGHLSGDHLLVDISERLKTHYQDQNIEIARIGGAEFALFFYHIDDIQELINYAQQLQSI 523

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSS 699
              PI     E+ +  S G   +      +   L++A LA+ HA+       V    ++ 
Sbjct: 524 FNTPIQSASGEVVIQLSTGLV-YQLDNHDAMHWLRSASLALAHAQSKSNKLAVFEPYMAD 582

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +  +  +L  A++N EL   Y P++   D +I G EALI+W  P+ G IS +EF+ 
Sbjct: 583 ISQKKTKLAAELSHAIKNEELLPYYQPLVNFEDGKIHGAEALIRWHSPQRGLISPNEFIP 642

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALI 818
           +AE+  MI  I   +L +   D          P    + +N++++ L D    + +Q  +
Sbjct: 643 LAEDNGMIINIGRMVLRQACIDTAQKIASGEWPEDFVMHVNVSTEQLHDGNSFQRLQDAL 702

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P  + L   ES ++ N      LL ++R +G+ + +DDFGT  S LSYL  +PF
Sbjct: 703 IESSLKPKNLSLEIIESRLLNNDIFIIELLNKVRALGVHIAIDDFGTGYSSLSYLHTLPF 762

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +   T +    +I  +II MAK    +I+A+ I  +   + L  +GCD  Q
Sbjct: 763 DCLKIDRSFVKSLTRENADTSITSAIIHMAKGFNVSIVAEGIETKEQAEILRSLGCDIAQ 822

Query: 937 DSHVASPLGFNSILKL 952
               + PL      +L
Sbjct: 823 GYLYSKPLPIEQWEEL 838


>gi|330991752|ref|ZP_08315702.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329761220|gb|EGG77714.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 575

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/586 (23%), Positives = 246/586 (41%), Gaps = 20/586 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +QH       +     D +  +  V  S  IV   D              I   +   + 
Sbjct: 1   MQHDDRLRALTH---QDADFWADLVD-SVLIVAITDSAGVITYVNDRFCEISQYSREELI 56

Query: 447 GPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G     +    H  D D FR +  +    +    Q     RA D   +W+   I P  + 
Sbjct: 57  GSTHRIVNSGYH--DADFFRDLYRTIQSGQL--WQGNICNRAKDGSLYWVATTIIPKLDR 112

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT---DD 562
            G I  Y+    +ITE   + + +   A  D LTG+ NR  F   L   L          
Sbjct: 113 AGVIQGYVASRFEITELMNTRDRLCELAETDTLTGLLNRGGFNTALADELARCREPGSTG 172

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
              P + + D+D +K+INDV G   GD VL ++  R+ EL    D ++RL G+ F +IL 
Sbjct: 173 QPAPALAMFDLDGFKQINDVHGHHAGDIVLRAIASRLIELTHPDDPVSRLGGDEFAVILH 232

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                + +  +   ++  +  PI++    ++V  SIG         T  ++ KNA++AMY
Sbjct: 233 RTLEDISLERYMDRLQAILERPIDIETVTVSVAGSIGAVLL-DGTDTIEDVQKNADMAMY 291

Query: 683 HAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  GG   + F          RV I  +    VE ++  + Y PI+     ++  +EA
Sbjct: 292 AAKRAGGKQSQMFTRKLRERAQARVSILSEARCGVERNQFEVYYQPILNCHTLKVDQIEA 351

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G +++ +F  +  +  + +A+   M+E   R  +   +    P   + IN+
Sbjct: 352 LLRWQHPERGLLAAEDFSDVFTDAGLAQAMGPRMIE-AFRHDVHMWNSNGHPQRQLAINL 410

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLT 859
           +  DL+ ++    ++  + +    P    L  +E+++     ++    L  L + G  + 
Sbjct: 411 SRMDLIRDDYQRELEESLRRFNMQPENFVLEVTEAMLHGRRADQGIRNLRELARSGFRIA 470

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LD+FG   ++L++L  +PF  VK + S++ G         +L S+I M +     +  + 
Sbjct: 471 LDNFGKGITVLNHLRELPFSQVKIDQSMVAGIVGNPDACMVLSSLIEMGQGFRMEVTVEG 530

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +        + +M  + IQ  +++S L    IL ++ E F     +
Sbjct: 531 VENREQFDLVMQMKPERIQGFYISSALSPQDIL-VMPEHFDREARS 575


>gi|317970331|ref|ZP_07971721.1| sensory box/response regulator [Synechococcus sp. CB0205]
          Length = 550

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/546 (24%), Positives = 246/546 (45%), Gaps = 19/546 (3%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAA 488
            +P +  IL  +       +   L  +   DR+  RT L    +  + GR++   R+R  
Sbjct: 3   WSPQLCQIL-RSEEGGGQTMDQLLAVVAKEDRERVRTELQQSQLSGQAGRIR--HRLRLK 59

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D    ++  R     ++ G  L  IG   +    + +          D LT +PNR +  
Sbjct: 60  DGDECFVDHRCFTSYDNKGRPLYSIGTLQECPGVQSTKGERFDPNQTDRLTCLPNRAATD 119

Query: 549 DRLTTILDL--SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             ++ ++    S    N R TV  +DID +++IND  GIA G+ +LV + R + + +   
Sbjct: 120 IYISELIRDVISGVSKNTRITVTCLDIDHFQEINDTFGIANGNRLLVWIARHLRDQIAPE 179

Query: 607 DILARLSGNRFGIILIS-ENNSLKIADFAIAMRKSIAMPINLLER--EITVTASIGFASW 663
           D LARL  + F II      ++         ++K + +    LE+   I ++A IG ++W
Sbjct: 180 DWLARLDSDSFVIIQTDGIQSTQDAIQHGKRLQKGLRLTSRNLEKLPSIHLSACIGISTW 239

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELY 721
                   + +++A  A+  A+ RG   V+ +  S   S R  + +++ L  A+E +EL 
Sbjct: 240 PGITTADDDPIQSARTALAAAQRRGPGKVQVYSESLSASIREALNLEQKLSTAIEKNELK 299

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y          I+G EAL++WD      I  + F+ +AE+  +I+ I  + L+   + 
Sbjct: 300 LHYQLQFDQR-GSIMGAEALLRWDRQGEAFIPCTRFIPVAEQSGLIEDIGSWALKNAVQQ 358

Query: 782 IISWRDQANMPPIFILINIASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVM 838
              W+      P  + IN++++ L + +   L E +  +       PS I+L  +E+ ++
Sbjct: 359 FAEWQRNNINIP-KLSINVSAEQL-NPDVEPLDELITEICHLEGLCPSHIELELTETALL 416

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            NP  + + L RL+K+G+ L +DDFGT  S L  L  +P    K + S +          
Sbjct: 417 KNPNDAAMRLQRLQKLGVCLWVDDFGTGFSNLKSLQRLPLKGFKIDKSFVRDMEQDPNDY 476

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +I+R+   +A  +    +A+ +     +++L R+GCD  Q   +A P     + + L + 
Sbjct: 477 SIVRATTQLAHGLGLKSLAEGVESIQQLQQLKRLGCDGFQGFLLAKPKNAEEMARELNDT 536

Query: 957 FPLVKN 962
               K 
Sbjct: 537 LSHAKR 542


>gi|53718898|ref|YP_107884.1| hypothetical protein BPSL1263 [Burkholderia pseudomallei K96243]
 gi|52209312|emb|CAH35257.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 580

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/558 (21%), Positives = 243/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 23  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRELIPEQD----TATLDGLL 76

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 77  ARASQTGDVEKATLCLVKSLTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTY 136

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +
Sbjct: 137 ELHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDAL 195

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 196 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAALDAAEALARQLQTAVQRPYAYD 255

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS+G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 256 GQAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 315

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W HP  G ++ + F+ +
Sbjct: 316 DAERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWHHPVHGLVAPATFIPL 375

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 376 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 434

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 435 TGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 494

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 495 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 554

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + +
Sbjct: 555 LVCQALPSDELAQRFEAQ 572


>gi|331269822|ref|YP_004396314.1| sensory box/GGDEF family protein [Clostridium botulinum BKT015925]
 gi|329126372|gb|AEB76317.1| sensory box/GGDEF family protein [Clostridium botulinum BKT015925]
          Length = 817

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 142/823 (17%), Positives = 291/823 (35%), Gaps = 99/823 (12%)

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
           KD  +S      ++  V    A    +  +     +           +G+  I    L  
Sbjct: 20  KDRKSSTNKTFFLLCTVTCCWAFGYCMMLIT--EDIYCVNIFRIISSVGWCFIHGTLLEF 77

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
            + +  G         +I L    +IF                +          +  +  
Sbjct: 78  AIAISCGGKKEISYIKKIILYIFPLIF-----FIRNAMNSPHDVIVKTNMGFVDICPIDL 132

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
            +  +        L  I + + +    +  +  ++AV+L    I+ F+      + +   
Sbjct: 133 IFVFLVVYYMFCVLCGIFIIHKWGKNSNKNREKKQAVVLNITIIIAFVLGTLTNVILPIY 192

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
             N          + +  +       + +  T  +                   + ++  
Sbjct: 193 KINTFPWGIFFTYIPIFGMWYSIITYKMLSITPAYVSD---------YIFKSVNEPIFFL 243

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           +             ++       +     ++   I  +  D     L+  +  +      
Sbjct: 244 EQDLIIKNANKAAISMSKYNIVELQQK--SFNTLIKESKID-----LNKLLK-KNYMNNL 295

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL--------------- 526
           E  + + DN+    I+  R + +   DIL  + I  DI+E+K +                
Sbjct: 296 EVNLVSKDNKSTECILSARIVYDDFKDILGIVIILYDISERKNAEKTLRNYNIRLVKKVK 355

Query: 527 ------------------------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                                   E I    + D LT +PNR  F + +  +L     + 
Sbjct: 356 QRTLKLEESNKILQKEILDRKIAEEKIRYMLYNDELTKLPNRLYFRNYINEMLIKYKKNC 415

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +M + ID +K +ND LG   GD+++   + RI E++    + AR  G+ F +++ 
Sbjct: 416 GY-FAIMFLGIDNFKLVNDTLGHNKGDELIKQFSNRIKEVIDDKYLFARGGGDEFLLLIN 474

Query: 623 S---ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +   E ++  I      + K +  P  +   E  +T S+G A +         +LK+A+ 
Sbjct: 475 NMDKEEDTDTIKKILSNINKVLKNPFIIENEEQFITISVGVAFYPDDGQDEETLLKSADT 534

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY AK  G N ++ F +   +       +K +L  A+E  EL + Y P + ++  +IVG
Sbjct: 535 AMYEAKSCGKNDLKCFSLEVRKRLIEKTIMKNNLYRALEREELEIYYQPQVDILKNKIVG 594

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W         +  F+ IAE+  +I +I   +++   R +  W +        + 
Sbjct: 595 FEALLRWKFNDEQISPNK-FIPIAEDTGLIVSIGYMVIKEACRTVKKWNNIT-KEKFTMA 652

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           INI+ K L +    + ++ ++ +       I+   +E V +   +     +  L+K+GI 
Sbjct: 653 INISFKQLYEPNFVKKVKCILREIELDAEYIEFEITERVAIKQNKDVFNTIQELKKMGIK 712

Query: 858 LTLDDFGTKCSLL---------------SYLGYIPFDTVKFNGSLMTGSTEKRIAILRSI 902
           +++DDFGT+ S                  ++  +P               +K  AI+ SI
Sbjct: 713 ISIDDFGTEYSSFMNIKKISIDKIKIDMQFIKNVP-------------HEKKDSAIVSSI 759

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           I  + N+   +IA+ +  +  ++ LT   CD +Q      P  
Sbjct: 760 IDFSHNLGLKVIAEGVETKEQLEYLTYKKCDEVQGFLYYKPKP 802


>gi|84515194|ref|ZP_01002557.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53]
 gi|84511353|gb|EAQ07807.1| hypothetical protein SKA53_13258 [Loktanella vestfoldensis SKA53]
          Length = 597

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/572 (22%), Positives = 256/572 (44%), Gaps = 44/572 (7%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           + D  W+ D     +  +  +  +  ++   + G  R+            ++  L     
Sbjct: 19  ASDWFWETDHQNRFIYFSNRMEQVTKISRADVLGRERDIFA--EEPSGAAWQAHLADLQA 76

Query: 474 YRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK--------- 523
           +R  R  +E+R+    D    W+ I   P  +  G    Y G  +D+T +K         
Sbjct: 77  HRAFR-NFEYRIIRPTDGSVMWLRISGEPQFDQAGAFTGYRGTGHDVTREKVAMMQLEQS 135

Query: 524 ------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
                       ++ + +   A+ D LT +PNR++F   L   L  +    + R  ++ +
Sbjct: 136 NAALAIRNRELDEARQALEQAAYHDPLTELPNRRAFERALEHCLGAA----DGRVALLHL 191

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG   GD VLV+  +RI + +       R+ G+ F ++L    ++    
Sbjct: 192 DLDRFKWVNDTLGHQSGDAVLVTAAQRISQAVGNRGQTYRVGGDEFMVLLTQGISANLAH 251

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               A+ K++  PI+L +R++T+  SIG A+  + + T++ ++ +A++A+Y AK  G N 
Sbjct: 252 QTGTAIVKALTRPIDLAQRQVTIGISIGIATGVAGQDTAATVIAHADVALYEAKRNGRNQ 311

Query: 692 VES--FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V     +++     +  I   +  A+E  E    + P   +   EIVG EAL++W HP+ 
Sbjct: 312 VCQITPQITKQMQIKRQIAATIPGALERGEFTAYFQPQADIETGEIVGAEALVRWHHPEC 371

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  ++F+ IA E+ MI+ I+  +L      +  +R      P  I +NI+   L+D  
Sbjct: 372 GLLKPADFLDIAAEMGMIEDIDRQVLRISLAAVDKFRACGLHLP-SISVNISGPRLMDPR 430

Query: 810 LCEGMQALI--SKTLYSPSRIKLSFSESVVMGN---PERSRLLLGRLRKIGISLTLDDFG 864
           L E +       +   S     +   E++ + +     + +  L +LR +G+ +  DDFG
Sbjct: 431 LPEDVANTWTDRRCGLS-----IELLETIYLDDRREVPQIKENLQQLRNMGVEIHSDDFG 485

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  + +  L  +  D +K    ++  +     +  ++ +I+ M + +     A+ +    
Sbjct: 486 SGRASIVGLLKVQPDRLKIECRMIRAALRDPHKSKVIAAILEMTRALGIAATAEGVESAK 545

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           DI  + R+GC Y Q + ++ PL   + +  L 
Sbjct: 546 DIAAVRRIGCAYYQGNVLSPPLQQAAFIAFLS 577


>gi|317488251|ref|ZP_07946818.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316912633|gb|EFV34175.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 526

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/535 (21%), Positives = 226/535 (42%), Gaps = 24/535 (4%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           + RD    + ++     L    + G I  W   I   DR  F   +DS +         E
Sbjct: 1   MQRDIALVSDNMRDDFDLPDSLVPGLIPLWRELIVERDRKRFDDSIDSMLSGETDCHDLE 60

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++V+ A  +  W++ R     + NG    + G+   + E+K  +         D++TG+ 
Sbjct: 61  YQVKNALGESIWVMCRGLLKRDENGQPTMFAGVVTCL-ERKGKI---------DSVTGLF 110

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
                ++ +  ++   +        VM++ +D + +IN + G A G+ VL    +    L
Sbjct: 111 THDECMNLIDRLIACESQGG-----VMLLGLDDFSRINLLNGHAFGNTVLRMFAQSTQRL 165

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           +     + RL G+ F I++        + +   A+         + +       S G A 
Sbjct: 166 IPEGASMFRLDGDVFAIVMDG-AGCAAMEELYHAIHVVANRQHTIDDLSFFCMVSAGIAM 224

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-EDLCLA---VENS 718
                 ++ ++L+NAE A+  +K RG N    F  ++  +    ++  D   +    +  
Sbjct: 225 IGQDAQSAQDLLRNAENALEESKQRGKNTSTFFSSATIATKLRRLEISDYMQSSVLDDMK 284

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
              L Y P++     +I G EAL++W+  + G +S  EF+ + E   +I  +  ++LER 
Sbjct: 285 NFELYYQPLVCAETMDIAGAEALLRWNSEEHGQLSPVEFIPVLESYGLIGQVGRWVLERS 344

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                 W +    P   + +NI+   LLD +    ++ L+ +T   P+ I L  +ES  +
Sbjct: 345 FTQCKRWSET--HPGFIMDVNISYLQLLDADFVPFVEQLVERTGVDPASIVLEMTESYFV 402

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            + +  R    RLR IGI + +DDFGT  S L  L   P D VK +   +     +    
Sbjct: 403 TDMDALRATFDRLRSIGIRIAMDDFGTGYSSLGLLAQSPADIVKIDRLFIKDIHREAFNR 462

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A + ++I +  ++   +  + +    ++  +  +G D IQ   V+ P+  +S  +
Sbjct: 463 AFIDAVIELCHSVGIEVTVEGVEEPTELDAVRAIGADSIQGFFVSCPIPAHSFEE 517


>gi|159036768|ref|YP_001536021.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
 gi|157915603|gb|ABV97030.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
          Length = 790

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 135/704 (19%), Positives = 256/704 (36%), Gaps = 54/704 (7%)

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
           +          L       P+ +   A++   +       F             + +   
Sbjct: 51  LVTVLAGVAVALATAGHAEPVRSIGWAKLISLATATAGLLFGAGLLRLPGLAPTVGVVTR 110

Query: 345 ILIFIWFIGLWMAITKRL----DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + +    I   +     +       ++      G  +++  +   +I  +     F   +
Sbjct: 111 LSLDGLIIATALWFVGWVLVAEPTRLLGQPPAAGAPILLATVSAALIVGLATVVVF--RV 168

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--------------MH 446
                R+ LA LG+G        V      T  +    G A G               + 
Sbjct: 169 PVPAPRRRLATLGAGSAA---TTVGGLGLATGLLHADTGWALGGAAVAAAGLLTVALVLR 225

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G  R     I    R+    +L                                 +    
Sbjct: 226 GFDRPCRSDIDPTWREGEHAVLPILAMAGSAAYHL------LQGGRFDPPGVAAVIVEVF 279

Query: 507 GDILRYIGIANDITE-QKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             + R     +D+    ++ +E        A  D LTG+ NR+  L  L           
Sbjct: 280 ALVARQYLTLHDVRRYARRLVEREAHFRELAHTDALTGLANRRGLLRALHRSAAR----- 334

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             R  ++++D+D +K +NDV G   GD VL  + RR+ + L   D+ ARL G+ F +++ 
Sbjct: 335 GTRCILLILDLDGFKHVNDVRGHDAGDAVLAEVGRRLRDTLGSGDVAARLGGDEFAVLMP 394

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      +   +     L E  + ++ SIG A  T        +L++A+LA+ 
Sbjct: 395 GP--PAAVDQMGERLLGVLGAAYELPEGPVFLSVSIGTAGGTGQP-DIELLLRHADLALR 451

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +AK RG N +E + V+  R       ++ +L  A+E  EL LV+ P+  L     VG EA
Sbjct: 452 YAKQRGKNRIERYDVAYDRLLSRRTMLEHELRGAIERDELRLVFQPVASLPSVRPVGAEA 511

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HPK G +   EF+ +AEE  MI  +  ++L +    +  W    +   +++ +N+
Sbjct: 512 LLRWRHPKLGAVRPDEFIPLAEECGMIAKLGEWVLHQACHQLSRWLADGHD--VWVSVNV 569

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + ++L        +   +      P R+ L  +E  V  + +     L  LR+ G+ + L
Sbjct: 570 SPRELHAPAYVGQVTEALRVHRVPPQRLVLEVTEHAVATDLDELIRRLTALRRTGVRIAL 629

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA---------ILRSIIPMAKNIET 911
           DDFG   S L  L  +P D +K + SL+      R           ++  ++ +      
Sbjct: 630 DDFGAGYSSLGQLRRLPIDILKIDHSLVAEHEPVRPVGTDGPAFAPMVDIVMRLGHQFGL 689

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +IA+ +    ++  +   GC + Q + +   +    +  +L  
Sbjct: 690 GVIAEGVTTPTELAAVVAAGCHFGQGALLGWGVPAEHLEAMLDA 733


>gi|332295651|ref|YP_004437574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermodesulfobium narugense DSM 14796]
 gi|332178754|gb|AEE14443.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermodesulfobium narugense DSM 14796]
          Length = 842

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/557 (19%), Positives = 224/557 (40%), Gaps = 24/557 (4%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +       A   + +     D     +        I G +   + G            D
Sbjct: 292 QNSLVLLQKASEKTHEWFLVMDENGYILFVNEAALNISGFSKNELIGNDIKIFQS--EFD 349

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R +F   +   +  +          +  +    ++   I  ++ S+    +Y+ +  DI+
Sbjct: 350 RADFFENMLKILK-KGSTFHSNMIGKRKNESLFYLDTMIFSVTTSDKK-RKYVMLGKDIS 407

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
                        + DNLTG+ NR SF   +   +  S+  +     ++ I+   +  IN
Sbjct: 408 GN-----------YFDNLTGLLNRISFYSEVDLFIKRSSP-EKPISALIKINPLNFTIIN 455

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   G+ +L+ + +R+         +A+L  +RF + + ++ +  +I D +  +   
Sbjct: 456 QAFGFDKGNVILIQIAQRLKSFFGPDTTIAKLESDRFAVFIKNKKSEEEILDLSYELLDL 515

Query: 641 IAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
           +     +   + I+V+ +IG + +      + +++  A +A+  A+ +G N +  FR   
Sbjct: 516 LTKSYLVDNNQVISVSFNIGISIFPKDGENADQLINKALIALLDARQKGENCIGFFRNDL 575

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                + +++K  L  A+   E  L Y P +   +  IVG E+L++W+      I   +F
Sbjct: 576 GQRAKEILILKSGLEDAISKKEFVLYYQPYVD-KNFNIVGAESLLRWEKGS-EVIFPMKF 633

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E   MI  +  ++L+   + I           I + +N + K L    + + +   
Sbjct: 634 IPYLESTNMIIYVEEYVLDIALQIISRLN--LKGIKIPLSVNFSYKTLSRENIIDILYMK 691

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I K    P  +++   E + + N E ++ L+ +L  IGI   LDDFGT  S LSY+  + 
Sbjct: 692 IGKFNIDPDMLRIEIVERIFIENLEYTKNLIEKLSSIGIRFMLDDFGTGYSSLSYISKLK 751

Query: 878 FDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + S +     E    ++ +II ++K +    IA+ +      + L  +GCDY Q
Sbjct: 752 IDYLKIDISFIRNIFDEYTKRVVETIIFLSKKLNIKTIAEGVETIEQFEILRDIGCDYFQ 811

Query: 937 DSHVASPLGFNSILKLL 953
               + PL        +
Sbjct: 812 GFLFSKPLPEADFENFI 828


>gi|90578903|ref|ZP_01234713.1| diguanylate cyclase/phosphodiesterase [Vibrio angustum S14]
 gi|90439736|gb|EAS64917.1| diguanylate cyclase/phosphodiesterase [Vibrio angustum S14]
          Length = 430

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 201/422 (47%), Gaps = 12/422 (2%)

Query: 543 NRQSFLDRLTTIL-----DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           NR+ F + +   L     + +        +++ ID+D +K IND+ G  VGD +L ++  
Sbjct: 2   NRRRFSEMVEKELVFVNDNKADVSCCKEFSILFIDLDDFKAINDLYGHDVGDKLLKNIAE 61

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + +      ++ R  G+ F I+L   ++S     +A  +   +  PI +   ++ +T S
Sbjct: 62  MLLKHCSDDSLVCRYGGDEFAILLKGHSSSE-AKKYAEDLIGVLLRPIYIDTIKLDITIS 120

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAV 715
           IG +++  S +T  ++LKNA+ AMY  K  G N +  +          ++ +K+ L  A+
Sbjct: 121 IGISTYPESGLTHLDLLKNADYAMYEQKRNGRNGISIYDGKLQAEYLRQLRLKDRLIKAI 180

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              ++ + Y PII +   ++   EAL +W   + G IS   F+ +AE+  +I  +   + 
Sbjct: 181 SEYKIQVYYQPIIDIETGKVCKFEALTRWFDEEEGYISPVIFIEMAEKYGLIGDLGKIVF 240

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           ++   D+   R Q     I I IN + ++  + +  + +  +I +      +I +  +ES
Sbjct: 241 DKACCDLAGMRQQ-GFTDICISINRSVREFSNCD-QKYIYDIIERYNLPFDKIMIEITES 298

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-- 893
             +        LL    + GIS+ +DDFGT  S +S +     + +K + S +       
Sbjct: 299 AALDEGNNILELLSEFSQKGISIAIDDFGTGYSSMSAIIANKPNIIKIDRSFIIDIEHSV 358

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   ++  ++ M++ +   ++A+ +  E  ++ L++MGC YIQ  + +  +     ++LL
Sbjct: 359 ESQILVSLVMDMSRKLNLDVVAEGVESEAQVRILSKMGCHYIQGFYFSPAVEIEQAMRLL 418

Query: 954 KE 955
           ++
Sbjct: 419 EQ 420


>gi|46578439|ref|YP_009247.1| HAMP domain/GGDEF domain/EAL domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447850|gb|AAS94506.1| HAMP domain/GGDEF domain/EAL domain protein [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 793

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 214/457 (46%), Gaps = 10/457 (2%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +    G       +A  I+++    + +   A  D+LTG+ NR++  + L   LD     
Sbjct: 322 VREIGGLQTAVTRMAQAISQR---EQELAWFATHDDLTGLANRKALHEMLAARLDRLEEG 378

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII 620
            +    V+ IDID++K IND +G   GD+V+ +   R+G  +       AR+ G+ F  +
Sbjct: 379 ASETVAVIFIDIDRFKAINDSMGHTWGDNVIAAFAARLGAFMHPLHAFCARVGGDEFV-V 437

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +   + +  +     A+   +  P ++  RE+ ++AS G         +   +++NA  A
Sbjct: 438 VPDASATHNVVRDTRALLAHLGTPYDINGREVRLSASAGVLFVGDPGESPDVIIRNANAA 497

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M+ +K RG   +  FR     S  + +  + +L LA    +L++VY PI+   D  +   
Sbjct: 498 MHRSKERGFGRISIFRPLHLDSYMLRLDIERELPLAAATGQLHMVYQPIVNASDGSLHSF 557

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFIL 797
           EAL++W+HP+ G++S + F+ +AE+   +  +  F L      +  + +   + P +   
Sbjct: 558 EALMRWNHPRHGSLSPATFITVAEQTGHVGLLGDFALREAGACVRRFGEAGLLTPGLRFG 617

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+   L+  +    +++++        RI L  +ES ++         L  L K G++
Sbjct: 618 VNISPAHLMAQDFLSDIESVLDAVSVPGDRITLEVTESALISTGAELMGRLETLAKRGLN 677

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
             +DD+G   S + YL    F  +K + SL+     +    AI+RS + +A ++   I+A
Sbjct: 678 FAIDDYGAGYSNIQYLASEHFRVIKIDKSLIDEVHLRDRMRAIVRSTVQLAHSLGCKIVA 737

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +        L R+GCDY+Q    + P+     ++L
Sbjct: 738 EGVETHAQANLLARLGCDYLQGYLFSRPVPETDAMRL 774


>gi|254228298|ref|ZP_04921725.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262394354|ref|YP_003286208.1| putative signal transduction protein [Vibrio sp. Ex25]
 gi|151939104|gb|EDN57935.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262337948|gb|ACY51743.1| predicted signal transduction protein [Vibrio sp. Ex25]
          Length = 567

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/573 (20%), Positives = 242/573 (42%), Gaps = 13/573 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T I    A+    + +    ER         + ++  D     V         LG+ +G
Sbjct: 1   MTTIFDQQASDSDREFLKIVEERFIHIFDVFNEGLFYMDEFGTMVFYNKGFYEQLGINAG 60

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +   +  WL  +H  DR+   T +D+ +     R+   +RVR  + Q+ W+        
Sbjct: 61  RI--SLEQWLELVHPLDRERLSTRVDAHITTNNTRVTTTYRVRKPNGQYVWIEGVAMTKE 118

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G     +G   DI+E+K     I   AF DN +G+ NR   L  L   ++ S    +
Sbjct: 119 TEHGH--YMVGSHRDISERKLMESYIHQVAFHDNASGMANRAHLL--LD--IEDSVRTTD 172

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
              ++  I I+  K   +  G  + D ++  L + +  L      + R+  + F I++  
Sbjct: 173 SCASICYIQIEDIKSYLNQYGSELVDGLVEKLLQTLSHLPSPNSSVYRVHDDDFAILIHD 232

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E +   +  +A +++++    +    + +    SIG         ++ E+L+ A     +
Sbjct: 233 ECSIEALQSYAESLKQTYHEAVIEEGQYLGSNISIGLYPCIDPSHSAEEILRKAARTCQY 292

Query: 684 AKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           A  +  + V  +  +          I++ L  A+E   L + + PII     ++V  E+L
Sbjct: 293 ASEQNRDRVAVYSEKTQHAVDRYFFIEQGLKSALEKQTLSVKFQPIIDAKSSKVVSFESL 352

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W   ++G I   EF+ +AE   +I  +   +  +    I ++R++     + + +N++
Sbjct: 353 VRWRSKEFGEIYPDEFIPVAENKGLIVELGYQVFAKACEFIKNYRERYQNQ-VRVNVNVS 411

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L+++E    ++A+  +    P  I L  +E+ ++ N + +   L  LR++G +L+LD
Sbjct: 412 VLQLMNSEFPTRIKAMADEAGVDPESIVLELTETFILDNNQTAIAPLSTLRELGFALSLD 471

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S L+    +P   +K + S+   T +       L+ +I M +     ++ + I 
Sbjct: 472 DFGSGYSSLNSFFDLPMTQIKIDKSMAWKTLTNRSSQEYLKFLITMCQENNIEVVIEGIE 531

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                   + MG DY+Q    + PL   S  + 
Sbjct: 532 DAKMCDFFSEMGVDYLQGYWFSKPLSVASASRY 564


>gi|126441016|ref|YP_001058400.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 668]
 gi|134283870|ref|ZP_01770567.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|167815100|ref|ZP_02446780.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 91]
 gi|167823517|ref|ZP_02454988.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 9]
 gi|167893610|ref|ZP_02481012.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 7894]
 gi|167902055|ref|ZP_02489260.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei NCTC 13177]
 gi|167910293|ref|ZP_02497384.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 112]
 gi|167918324|ref|ZP_02505415.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei BCC215]
 gi|217423504|ref|ZP_03455005.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 576]
 gi|226197514|ref|ZP_03793090.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pakistan 9]
 gi|254180308|ref|ZP_04886907.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1655]
 gi|254188264|ref|ZP_04894775.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197794|ref|ZP_04904216.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei S13]
 gi|126220509|gb|ABN84015.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 668]
 gi|134244858|gb|EBA44955.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|157935943|gb|EDO91613.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pasteur
           52237]
 gi|169654535|gb|EDS87228.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei S13]
 gi|184210848|gb|EDU07891.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1655]
 gi|217393362|gb|EEC33383.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 576]
 gi|225930420|gb|EEH26431.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei Pakistan 9]
          Length = 611

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/558 (21%), Positives = 243/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRELIPEQD----TATLDGLL 107

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  +  +   A D++  +     +  
Sbjct: 108 ARASQTGDVEKATLCLVKSLTYPLDVEVRAVRSRHHGVDGFAIAAFDVSSWRAIEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +
Sbjct: 168 ELHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDAL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 227 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAALDAAEALARQLQTAVQRPYAYD 286

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS+G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 287 GQAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W HP  G ++ + F+ +
Sbjct: 347 DAERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWHHPVHGLVAPATFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 407 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + +
Sbjct: 586 LVCQALPSDELAQRFEAQ 603


>gi|170020180|ref|YP_001725134.1| cAMP phosphodiesterase [Escherichia coli ATCC 8739]
 gi|253773540|ref|YP_003036371.1| cAMP phosphodiesterase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161547|ref|YP_003044655.1| cAMP phosphodiesterase [Escherichia coli B str. REL606]
 gi|169755108|gb|ACA77807.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli ATCC 8739]
 gi|253324584|gb|ACT29186.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973448|gb|ACT39119.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli B str.
           REL606]
 gi|253977659|gb|ACT43329.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli BL21(DE3)]
 gi|313848635|emb|CAQ31976.2| c-di-GMP phosphodiesterase, heme-regulated, subunit of DosC-DosP
           complex [Escherichia coli BL21(DE3)]
          Length = 799

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLFLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|312971653|ref|ZP_07785828.1| putative enzyme [Escherichia coli 1827-70]
 gi|310336250|gb|EFQ01450.1| putative enzyme [Escherichia coli 1827-70]
          Length = 778

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 277 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 321

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 322 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 379

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 380 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 434

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 435 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 491

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 492 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLFLGAALKEAISNNQLKLVYQPQIFAETGEL 551

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 552 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 610

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 611 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 670

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 671 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 730

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 731 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 776



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 97  YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 156

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 157 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 211

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 212 DVLAHLQNLVMTFSDITEERQIRQ 235



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            +   + +   P    + G     + G   + L  I  + R      +       + R++
Sbjct: 7   INENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIRHNREGGKARVE 64

Query: 481 Y---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               E ++   D    W    +  + ++ G +  Y+ +  D + +    E     
Sbjct: 65  GMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQL 117


>gi|225018183|ref|ZP_03707375.1| hypothetical protein CLOSTMETH_02120 [Clostridium methylpentosum
           DSM 5476]
 gi|224949180|gb|EEG30389.1| hypothetical protein CLOSTMETH_02120 [Clostridium methylpentosum
           DSM 5476]
          Length = 606

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 97/436 (22%), Positives = 200/436 (45%), Gaps = 14/436 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    +    + D LTGI N+ +F DR    L L   + ++   ++  DI+ +K +ND 
Sbjct: 171 KRQNAKLNRLLYTDPLTGIANQSAFADR---ALYLLRDNPSISYALVYFDINNFKYVNDA 227

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD +L ++ +     L   ++ AR++ + F ++  +             +R  I 
Sbjct: 228 YGYETGDALLQAIAQYFDRHLSKSELCARINADHFALLTFNGEERD--ISLTKRIRVCID 285

Query: 643 MPINLLEREITV----TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             ++    E+ +    + S G           + M+  A +A+  AK+       S+  +
Sbjct: 286 QAVS-DGIELNIADSLSYSFGIYQIVDHAEPVNSMMDKANIALKQAKNHEEMRTVSYNDA 344

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            F        I+  +  A++N+E  +   P + +    ++G E+L++W  P++G +   E
Sbjct: 345 LFAKLQRERQIEARMQSALQNAEFLVYLQPKVEISTNTMIGAESLVRWVSPEFGFLPPDE 404

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E+   I  ++ ++L+R+ R +    D        I IN++   L  ++  E    
Sbjct: 405 FIPLFEKNGFIAQLDFYVLDRVCRKMRQVIDDRLSDSFSISINLSRVTLYQDDFFERFTR 464

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +    PSRI+L  +ES  +GN E    +L RL+ +G  + +DDFG+  S L+ L  +
Sbjct: 465 IVERYKMPPSRIELEVTESAFIGNQEGILSVLERLKGMGFLIAMDDFGSGYSSLNLLKLL 524

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K +   +  S++   +  I++ +I MAK ++  ++ + +  +  +  L ++ CD 
Sbjct: 525 PIDVLKIDKQFLRESSKGDRSYRIIKCVIEMAKALDAQVVCEGVETKEQVDFLAQINCDI 584

Query: 935 IQDSHVASPLGFNSIL 950
            Q  + A P+      
Sbjct: 585 GQGYYFARPMAIADFE 600


>gi|148976531|ref|ZP_01813227.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145964107|gb|EDK29364.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 854

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 104/433 (24%), Positives = 199/433 (45%), Gaps = 12/433 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D+LT + +R+ F+D             N + T+ ++ ID+++ I
Sbjct: 413 SNLKTSFKQLQSQLTYDSLTKLYSREGFID------AAKKNAGNDKGTLFLVGIDRFRDI 466

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +L+    R+  +L    +LAR  G+ F I   S      +   A  + +
Sbjct: 467 NDSLGHYNGDQLLIISAARLRGMLPSEYLLARTGGDEFAIYAPSVTQESDVQLLANRLLQ 526

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVS 698
           + A P  +    + +  SIG    + ++   +  L+N+ +A+ +AK  +    + S  + 
Sbjct: 527 TFASPFAMESESVMIKVSIGIVHVS-NEQDFTVWLRNSSIALSNAKQDKARVSIYSPEMG 585

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +    R  +   L  A++  +    Y PII L     +G EAL +W     G IS  EF+
Sbjct: 586 NASRHRTKMLARLNKAIDLQQFEPFYQPIIDLESGSTIGAEALARWVT-DEGIISPLEFI 644

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AEE  +I  I   +L +  RD     +         I +N++   L +N   + ++  
Sbjct: 645 PLAEESGLIYDIGKQILHKSCRDTAIAIESGKWSEDFSIHVNLSVDQLSENGFIDLVKKT 704

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+T      + L  +ES ++ N       +  L+ +GIS+ +DDFGT  S L+YL  +P
Sbjct: 705 LSETKLPAKNLTLEITESRIVDNDPTVIDNMLTLKALGISIAIDDFGTGYSSLAYLQKLP 764

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +    ++    +I+ +I+ + K  + +++A+ +  +     L ++ C   
Sbjct: 765 FDCLKIDRSFVRKLDKENLDSSIVAAIVNITKGFKVSLVAEGVETQQQADLLKQLQCPQA 824

Query: 936 QDSHVASPLGFNS 948
           Q    + P+ F+ 
Sbjct: 825 QGFLYSRPVPFDQ 837


>gi|262396821|ref|YP_003288674.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
 gi|262340415|gb|ACY54209.1| sensory box/GGDEF family protein [Vibrio sp. Ex25]
          Length = 477

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 211/441 (47%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 35  ILELHTVAEKEKRNAVHDALTGLPNRKYCFELIEDRI-----QSGDPFSVILFDVVNFKQ 89

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ E LK  D + R+ G+ F  IL S             + 
Sbjct: 90  VNDAMGHFCGDQLLIQIGQRLQEKLKGSDKIFRVGGDEFV-ILTSSACEETGKSLIEELD 148

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    +++  ++K+A++AMYHAK  G      +  +
Sbjct: 149 SALSNRFHLDEFQVSSRVVFGVSTYPYDALSNDLLIKHADIAMYHAKRNGNLFAFYNEDM 208

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 209 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDAHTNLAVGFEAVIRWHDENGKTISPNDF 268

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 269 IPIAERSNQVHNITMWVLNQVEKDLQTFIEK--DIKLPVHVNLSAKDLSSNLLFNRLETL 326

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 327 LKVNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 386

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 387 VDQIKIDRSFLCTASRTEGTRSIVENTIALAHGLGYSVVAEGVQDMDTLHFLRSRGCDII 446

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 447 QGYLFCPALPLNEVITWVNEH 467


>gi|194436460|ref|ZP_03068561.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           101-1]
 gi|194424492|gb|EDX40478.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           101-1]
 gi|323962339|gb|EGB57927.1| EAL domain-containing protein [Escherichia coli H489]
          Length = 807

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLFLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|212640071|ref|YP_002316591.1| PAS, GGDEF and EAL domain-containing protein [Anoxybacillus
           flavithermus WK1]
 gi|212561551|gb|ACJ34606.1| Multidomain signal transduction protein (contains PAS, GGDEF and
           EAL domains) [Anoxybacillus flavithermus WK1]
          Length = 814

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 111/412 (26%), Positives = 215/412 (52%), Gaps = 12/412 (2%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F++++T +L       +    V+++D+ ++K IN  LG   G+++L  +  R+ +++
Sbjct: 395 RTEFIEKVTDLLFT-----HEGVAVLLVDVYQFKFINSFLGYENGNELLNQIGIRLNKVV 449

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               +  R+SG++F I L  +    ++   A  +++++  P  +  + I +   IG +  
Sbjct: 450 DPHTLWTRISGDQFAIALSYDR-QDEVKQLANVVKETLQEPYTIGNQSIRIGVHIGISYA 508

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELY 721
             +++ +  ++ NAE A+Y AK  G N ++++   +S+  + ++ ++  L  AV+N EL+
Sbjct: 509 YDAQLCADTLMNNAEKALYFAKMEGTNIIKAYEPHMSNVFTRKMQLEHALSSAVKNKELF 568

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L+Y P +         +EAL++W HP+ G +S +EF+ +AEE   I  I  ++L +  RD
Sbjct: 569 LLYQPKVNFHTRS-FSVEALVRWKHPQLGFVSPAEFIPMAEETDAIYDIGKWVLRQACRD 627

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +   R       + I IN+++K  LD  L E +Q ++ +     S   L  +E+ ++ NP
Sbjct: 628 VAFLRQSVAGC-MKIAINLSAKQFLDEHLVEDIQHILQEEGCDASCFILEITETTIIKNP 686

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
           E+    L RL+K+G S+ +DDFG   S L YL   P D VK + S +      EK   I+
Sbjct: 687 EQVVKTLERLKKLGFSIAVDDFGVSYSSLEYLNRFPIDEVKIDRSFIQNMINNEKSKEIV 746

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +II +A N++ T+ A+ +  E   + L    C+ +Q  + + P+    +  
Sbjct: 747 SAIISLAHNLQLTVTAEGVETEQQAQFLIEKQCEQLQGFYFSRPVSLEQLPN 798



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 11/167 (6%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA-------VLGSGDIVWDWDIV 424
                LI IL     + H++A       +    E+   A          S +    +D+ 
Sbjct: 127 FAESTLIPILNEKNEVTHIVACTREITDVLQKEEQLEEAQQLIDSLFTHSQEAFILFDLF 186

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +    ++  +  L    + G        I    ++N    L      +         
Sbjct: 187 GRIIRINKEVERLFELRKEEIIGK--TLFDVI-PAYKENIEQTLARLSEGK-PLHAIRLT 242

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +R  +N+  ++ +   P+ N NG+I+       +IT+  ++ +    
Sbjct: 243 MRTKNNKNIYVSVNASPLLNKNGNIIAGFASLLNITDLIQTQKQFKQ 289


>gi|301023410|ref|ZP_07187195.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300397038|gb|EFJ80576.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 807

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|325961692|ref|YP_004239598.1| diguanylate cyclase/phosphodiesterase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467779|gb|ADX71464.1| diguanylate cyclase/phosphodiesterase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 513

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 216/445 (48%), Gaps = 18/445 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++   +   A QD LTG+ NR + +D L   L+   T     P ++++D+D +K IND
Sbjct: 69  LHEAHLEMQKMAMQDPLTGLANRSALIDALKAALE-GDTGSAEGPVLLLMDLDAFKSIND 127

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+++  RI   ++  D++ARL G+ F I+L    +  +       +  ++
Sbjct: 128 SLGHTAGDHVLITVGERIRSAVRESDVVARLGGDEFAIVLP-AASPDQAGIVGHRILAAL 186

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P+ L  R +   ASIG +       T  +ML  A++AMY +K  G N +  F      
Sbjct: 187 AEPVELPGRTVRCGASIGLS-AGGDGKTPEDMLMEADVAMYASKAEGQNRLHRFEPGLLL 245

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R+   + EDL  A+ N  L L Y P++ L    I G+EAL++W+HP  G I   EF+ 
Sbjct: 246 VRRLRSQLLEDLRAAIRNGGLTLHYQPVVELATGRIEGVEALVRWNHPTRGFIMPDEFIP 305

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALI 818
           +AEE  +I  + L++L      +  W D +       + INI++ DL   +  E ++ ++
Sbjct: 306 LAEEAGLISELGLWVLRTAVHQLRDWIDASLVDSRFSVRINISASDLQSLQFIEDVRNVL 365

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS-----LTLDDFGTKCSLLSYL 873
            +T   P ++ L  +E  ++   E     L R    G+      + +DDFGT  S +SYL
Sbjct: 366 KETGVRPDQVVLELTEVAIVKGNE-----LDRYSLGGLRGLGVGIEIDDFGTGYSSISYL 420

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D VK + SL+   G+   + A++ +++ + +      + + +      + L  +G
Sbjct: 421 RRLPVDRVKVDRSLIVGLGTDPTQPALVAAVLQLIRACGLEAVWEGVETAEQAELLRGLG 480

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C   Q    + P+    I +LL +R
Sbjct: 481 CLSAQGYFFSRPVPPGQIPELLADR 505


>gi|134094440|ref|YP_001099515.1| signaling protein [Herminiimonas arsenicoxydans]
 gi|133738343|emb|CAL61388.1| Conserved hypothetical protein; putative CheY, EAL,GGDEF domains
           [Herminiimonas arsenicoxydans]
          Length = 711

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/594 (21%), Positives = 241/594 (40%), Gaps = 40/594 (6%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW-----DIVRDRVTTTPD 433
            + +       ++A     +      E+ +  +    + ++       D   +       
Sbjct: 139 GLDMILRASTDLMALQTLEEFTAGVLEKIAHLLDMPTNGLFCIQQTLHDEETELFVV--- 195

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-- 491
                G     +     + L  +H          L   +  RR     E+          
Sbjct: 196 --AATG-TYQDLLNHPVSTLKDVH------IGHTLTRALNERRHIYGREYTALHFTGSAT 246

Query: 492 --FHWMIIRIRPMSNSNGDILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQS 546
             F       R ++     +L      ++I+        +  +  +AF D+LT +PNR  
Sbjct: 247 SNFTAFFKTGRALNEIELRLLEVF--CSNISVGLANIMLVSRLHNSAFYDSLTKLPNRTR 304

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             + +   L  S        T+ +IDID + + ND LG   GD +L+++  R+   L   
Sbjct: 305 LKEIIDESLISSRNRPT---TLALIDIDHFAETNDTLGHQFGDLLLLAVAARLQSRLGGR 361

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            ++AR+ G+ FG++         I     A+      P N+  +++ ++A++G    +  
Sbjct: 362 LVVARVGGDTFGVL------GDDIQVNPAAVLAQFERPFNIDGQDVQLSATVGLVRLSEH 415

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVY 724
           K    E LKNA +A+  AK +       F  S      +RV +   L  A E  +L++VY
Sbjct: 416 KGRGVEALKNAHIALKRAKMQQRTGHLYFSRSMGIDIRERVNMMHALRTAFEEKQLFVVY 475

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P I L+    VG EAL++W       IS + F+ IAE   +I  +  ++L +  ++++ 
Sbjct: 476 QPQIDLVTRAPVGAEALLRWQTEDNTMISPNRFIPIAEYSGLIIELGEWVLRQACQELVR 535

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            +         + +N++            ++  +  T   P  I+L  +ES+ M  P+  
Sbjct: 536 IQR-LGFSNFMMSVNVSQVQFRHPHFLGMLRKALEDTNAPPHCIELEITESMAMEEPDAL 594

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSI 902
             LL ++   G+S+ +DDFGT  S LS+L  +  D +K + + +   T+     +I   I
Sbjct: 595 IKLLDQIAATGVSIAIDDFGTGFSSLSHLQKLNVDRLKIDRTFVMEITDSSRGSSIAEMI 654

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I + +N+E  +IA+ +  E   K LT +GC + Q    + PL  +++   L   
Sbjct: 655 IQLGRNLELDVIAEGVEDERQAKILTELGCPFGQGYLFSHPLNPDALHDWLSHH 708


>gi|126454781|ref|YP_001065636.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106a]
 gi|242314994|ref|ZP_04814010.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106b]
 gi|254298148|ref|ZP_04965601.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 406e]
 gi|126228423|gb|ABN91963.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106a]
 gi|157807433|gb|EDO84603.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 406e]
 gi|242138233|gb|EES24635.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 1106b]
          Length = 611

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/558 (22%), Positives = 243/558 (43%), Gaps = 22/558 (3%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
           G+ D +   D     +  +      +G     +H         I   D       LD  +
Sbjct: 54  GAVDFLAHVDRDLRFLYVSDASLRFIGYHRDYLHT--LTLRELIPEQD----TATLDGLL 107

Query: 473 GYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                    E           + + + +R + + +  I  +   A D++  +     +  
Sbjct: 108 ARASQTGDVEKATLCLVKSLTYPLDVEVRAVRSRHHGIDGFAIAAFDVSSWRAIEARLTY 167

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D +TG+ N  + L  L       A +      ++++D+D Y++IN  LG   GD +
Sbjct: 168 ELHHDPMTGLDNLSALLPALMRA-QQIADEGGGCTALLLLDLDDYQRINRALGYDAGDAL 226

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIIL---ISENNSLKIADFAIAMRKSIAMPINLL 648
           L    +R+  L    + LAR++ ++F ++L               A  ++ ++  P    
Sbjct: 227 LRDTAQRLQRLATRGERLARVASDKFAVMLSAPTRVAALDAAEALARQLQTAVQRPYAYD 286

Query: 649 EREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHRGGNH--VESFRVSSF 700
            + + ++AS+G A +             S +L+ A+ A+  AK  GGN            
Sbjct: 287 GQAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAAGGNALAFHQPTDDPA 346

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W HP  G ++ + F+ +
Sbjct: 347 DAERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWHHPVHGLVAPATFIPL 406

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  +  ++L+     ++SW  Q      ++ +N++ +   D    + ++  I  
Sbjct: 407 AESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQFRDPRFTQSVRDAIKL 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT  S L+YL   P   
Sbjct: 466 TGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGTGYSSLAYLQSFPLAK 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E     LT MGC++IQ  
Sbjct: 526 LKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQRTLLTEMGCNHIQGW 585

Query: 939 HVASPLGFNSILKLLKER 956
            V   L  + + +  + +
Sbjct: 586 LVCQALPSDELAQRFEAQ 603


>gi|316932322|ref|YP_004107304.1| PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
           [Rhodopseudomonas palustris DX-1]
 gi|315600036|gb|ADU42571.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris DX-1]
          Length = 605

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/555 (21%), Positives = 233/555 (41%), Gaps = 23/555 (4%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            ++       V      V   D     +      AT   +A                   
Sbjct: 36  AAELRLFKEIVRALPSAVTVQDEQGRFIFVNDAAATQYRIAPAEAATGNPQ--------- 86

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            D  RT   + +   R   + E   R A  +    ++         G  L  +  + D+T
Sbjct: 87  LDRRRTDGAALLAQGRSGTREE---RIAFGETARALLTAHKPFEIAGRKL-LLSSSLDVT 142

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +QK   + +   A+ D LTG+PNR      +T +L+           V  +D+D +K IN
Sbjct: 143 DQKAIEDELFRRAYYDELTGLPNRSVMERHVTALLEEPQPQ---HFAVAFLDVDNFKHIN 199

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G +VGD +LV + +R+   L+  D+L+R+SG+ F ++L    +  ++A+    + + 
Sbjct: 200 DYYGHSVGDALLVGIAKRLSLELRETDVLSRISGDEFLLLLDPITSEAEVAEHIEFLLQR 259

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +  P  +   E+  +ASIG + +     +   + +NA++AMY  K         F   + 
Sbjct: 260 LKAPFYIDGSEVFASASIGVSLYPDHGRSYEALRQNADIAMYRVKSEAKGATAIFTAAME 319

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ +++ L  A+ +      + P + +   EI G+EAL++  +      +   F+
Sbjct: 320 HEALERMALEQSLRQAILDKRFCCAFQPKVDIRTNEIKGIEALVRLRNDNGVIQAPGTFV 379

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A EL  I  +   +L  I + I    D+       I +N+A++     +      A +
Sbjct: 380 DLAVELGRIDELTHLVLGEIMKSIDLINDRFGERA-SISVNVAARQAGSPDFMRSFCAAL 438

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + T   P+R  +  +E   +      + +L  LR+IG+ +++DDFG   S LS L  I  
Sbjct: 439 AATGC-PTRFMVEITEDAFVAKSHFQKEILPMLRRIGVGISIDDFGIGYSSLSALADITA 497

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYI 935
           D +K + S +T      +   ILR+I  +++ +  T+IA+ +    ++  L  M    Y 
Sbjct: 498 DEIKIDRSFITDIHKRPRSQGILRAIESLSEALGMTVIAEGLETFEELAYLQAMTRIRYA 557

Query: 936 QDSHVASPLGFNSIL 950
           Q  + + P+    + 
Sbjct: 558 QGYYYSKPIFLEELR 572


>gi|116668681|ref|YP_829614.1| diguanylate cyclase/phosphodiesterase [Arthrobacter sp. FB24]
 gi|116608790|gb|ABK01514.1| diguanylate cyclase/phosphodiesterase [Arthrobacter sp. FB24]
          Length = 512

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 115/438 (26%), Positives = 209/438 (47%), Gaps = 8/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D+LTG+ NR + +  +   L  +          +++D+D +K IND L
Sbjct: 71  EAHLEMQKMALTDSLTGLANRAALVSAINEALAETGQGGLPPAL-LLLDLDAFKGINDTL 129

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL ++  RI   ++  D +ARL G+ F +++       + A     +  S+  
Sbjct: 130 GHAAGDQVLAAVGERIKGSVRDTDTVARLGGDEFAVLMP-ATTLARAASVGNRILASLDG 188

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L    +   AS+G      +  ++ ++L  A++AMY +K  G N ++ F  +   + 
Sbjct: 189 QVELENDSVQCGASMGLC-IGGTGQSAEQLLIEADVAMYASKAGGRNRLKVFEPAMLHAR 247

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++   + EDL  A+  SEL L Y P++ L    I G EAL++W HP  G +   EF+ +A
Sbjct: 248 QLRSQLIEDLRTAISGSELVLYYQPVVDLTTGRIEGAEALVRWKHPSRGMVMPDEFIPLA 307

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISK 820
           E+  +I  +  ++L    R +  WR +        + INI+  DL   E  E ++  +S+
Sbjct: 308 EDAGLISELGGWVLRTAVRQLRDWRAEGRAGDEFSMRINISPTDLQRLEFIEEVRDALSE 367

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +P  + L  +E  ++   E  R  L  LRK+G+ L +DDFGT  S +SYL  +P D 
Sbjct: 368 AELNPELLVLELTEGAIVSGNELDRYSLNSLRKLGVGLEIDDFGTGYSSISYLRRLPVDK 427

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + SL+        + A++ +I+ + +      + + +      + L  +GC   Q  
Sbjct: 428 VKVDRSLLKDLGTDPAQPALIAAILQLIRACGLEAVWEGVENAEQAEHLASIGCVSAQGY 487

Query: 939 HVASPLGFNSILKLLKER 956
           +   P+  +    +L  +
Sbjct: 488 YFGRPVPADEFAAVLDAQ 505


>gi|86357221|ref|YP_469113.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281323|gb|ABC90386.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 708

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 206/439 (46%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   +  +  A  D+L+G+ NR   L  L  +       +   P + ++D+D +K +ND
Sbjct: 283 LRHLAQAAIFEANHDSLSGLLNRHGLLAMLEEL----EGSEGAPPRLYLVDLDGFKAVND 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  ++  +    +    +ARL G+ F ++ +      +I +    +    
Sbjct: 339 AWGHAVGDDLIRIVSNALIACHREVVAVARLGGDEFALVQVGIAARQEIEE---TILALF 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  +  R I V ASIG A+  +  I   E+L+ A++A+Y AK  G      +     R
Sbjct: 396 AGPFKIDGRTIEVGASIGAAARDAD-IEPLELLRRADMALYRAKENGKGRAIEYDPELDR 454

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    ++  L  A+ N  +  V+ P++      + GLEAL +W     GNIS   F+ 
Sbjct: 455 ERQRIAELESLLKSAISNGAIEAVFQPLVSATTGVVTGLEALARWRTAT-GNISPEIFIP 513

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+   ML+       +W      P + + +N++   L + E    + +L+ 
Sbjct: 514 LAERCGLIDALGSHMLKTSIEHARNW------PGMALSVNVSPVQLCNPEFAADVISLLQ 567

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K  + P R+ L  +E V+M NP+++R  +  L+K+GI   LDDFG   + +  L    FD
Sbjct: 568 KRDFDPRRLTLEITEGVLMTNPDQARRSIDHLKKVGIKFALDDFGCGYASIGALRQFGFD 627

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++   +      +L++ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 628 RMKIDRSLVSALDQATNGADVLKATISLATALQIPVTAEGIENIRQAAILREAGCDQLQG 687

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+  + I   L+E+
Sbjct: 688 YLIGKPMSADDISSKLQEQ 706


>gi|269963320|ref|ZP_06177651.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831959|gb|EEZ86087.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 575

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 236/560 (42%), Gaps = 13/560 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            + +    +R         + ++  D     V          G+ +G +   +  WL  +
Sbjct: 21  REFLQIVEQRFIHIFDVFSEGLFYMDEFGTMVFYNQRFYEQFGINAGRI--NLDRWLDLV 78

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  DR+     +D+ +     R+   +R+R  + Q+ W+           G     +G  
Sbjct: 79  HPLDRERLSKRVDAHINTDNTRVTTTYRLRKPNGQYVWIEGVAMTKETEQGH--YMVGSH 136

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K     I   AF DN +G+ NR   L  +  ++       +   ++  I I++ 
Sbjct: 137 RDISERKLMESYIHQVAFHDNASGMANRAHLLLNINELVK----SQSSHASIFYIQIEEI 192

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K   +  G  + D ++  L + +  L      + R+  + F I+++ +     +  +A  
Sbjct: 193 KSYLNQYGSELVDGLVEKLLQTLSHLPSPNCTVYRVHDDDFAILVLDDVPLEALQAYAQT 252

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++++    +    + +    SIG       + ++ E+++ A     +A  +  + +  + 
Sbjct: 253 IKQNYHDAVVEEGQYLGSNISIGLYPCVDPEHSAEEIVRKAARTCQYANEKNKDRIAVYS 312

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +         I++ L  A+E   L + + PI+   D ++V  E+L++W   ++G I  
Sbjct: 313 QKTQYAVDRYFFIEQGLKNALEERTLSVKFQPIVSASDLQVVSFESLVRWRSKEFGEIYP 372

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE   +I  +   + E+  + I S+R++     + + +N++   LL++E    +
Sbjct: 373 DEFIPVAENKGLIVELGYQVFEKACQFIKSYRERYQNQ-VRVNVNVSVLQLLNSEFPSKI 431

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+  +    P  I L  +E+ ++ N + +   L  LR++G +L+LDDFG   S L+   
Sbjct: 432 KAMTDEVGIEPQAIVLELTETFILDNNQAAIAPLNTLRELGFALSLDDFGAGYSSLNCFF 491

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S+   T +       L+ +I M +     ++ + I           MG 
Sbjct: 492 DLPMTQIKIDKSMAWKTLTNRSSHEYLKFLITMCREQNIEVVIEGIEDAKMCDFFAEMGV 551

Query: 933 DYIQDSHVASPLGFNSILKL 952
           DY+Q    + PL   S  + 
Sbjct: 552 DYLQGYWFSKPLSVASASRY 571


>gi|332091554|gb|EGI96637.1| putative enzyme [Shigella boydii 5216-82]
          Length = 807

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L  +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALQEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTDFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|170683445|ref|YP_001743738.1| cAMP phosphodiesterase [Escherichia coli SMS-3-5]
 gi|170521163|gb|ACB19341.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           SMS-3-5]
          Length = 807

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 229/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGTEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 G-PIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G    + L       ++R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDSLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|187730158|ref|YP_001880325.1| cAMP phosphodiesterase [Shigella boydii CDC 3083-94]
 gi|187427150|gb|ACD06424.1| heme-regulated cyclic AMP phosphodiesterase [Shigella boydii CDC
           3083-94]
          Length = 807

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R    LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             A+ + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAC 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|308051313|ref|YP_003914879.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ferrimonas
           balearica DSM 9799]
 gi|307633503|gb|ADN77805.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ferrimonas
           balearica DSM 9799]
          Length = 867

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/631 (23%), Positives = 272/631 (43%), Gaps = 33/631 (5%)

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
           +  + RA+  +   +L         +A   +        A       +   +G  + + V
Sbjct: 248 INSFYRAIHSVLRHLLYADNCFVALLAPDNQWLTFPYFEAGDALEAPVTRPLGDGLTERV 307

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
           +A     +      E          D     ++ R  +     +   L L  G + G + 
Sbjct: 308 MAAQRPVRLSRETIE------AAYRDGSLGQNVDRCLIDLQDWMGAPL-LIEGEIRGVLA 360

Query: 451 NWLPYIHI----NDRDN-----FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            +    H     +D+D          + + +  R+     E RVR  +     +  R R 
Sbjct: 361 VFSQ--HPHYGYDDKDLELLGFVSQHISTAIERRQA---LEQRVRYREELERKVTERTRE 415

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           M   N      + +   I +++K+   +  +A  D LTG+PNR   L+RL   L      
Sbjct: 416 MHAMN------VDLQRQIQQRRKAENRLRHDALHDALTGLPNRALLLNRLDQALKHIKRH 469

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N R  ++ ID+D++K +ND LG   GD +L ++ RR+GE ++  D LARL G+ F I+L
Sbjct: 470 ANERFALLFIDLDRFKLVNDSLGHLAGDLLLETIARRLGECIRDNDTLARLGGDEFVILL 529

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELA 680
            S  N   + + +  + + +  P+ L  +E    ASIG A        +   +L++A+ A
Sbjct: 530 DSIRNRQHVEEVSERILERVRQPLQLEGKEFFPGASIGIALADPHHNASPQSLLRDADAA 589

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +YHAK  G   ++ F           +  +     A+   E+ + Y P++ L  +++VG+
Sbjct: 590 LYHAKSAGRGGLQFFDRKMHAEAVADLTREAQFRQALSQREITVHYQPVMDLDQQQVVGM 649

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W HP+ G ++  +F+  A     +  ++ ++LE++ RD    R +      ++ +
Sbjct: 650 EALARWHHPQLGELTPDQFLPWACHSGAVAELDRYVLEQVCRDYPHLRSKIGRHG-WVHV 708

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+    L  +   E ++  I       +++ L FSE  ++ +       L RL+++G+ L
Sbjct: 709 NLDLTHLRSSSKLEQLEQCIESLSMPKAQLALEFSERDLLVDQRTLHEGLNRLQRLGVKL 768

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L+ L  +P D VK +      ST  E+  A+L S++ ++  +   + A+
Sbjct: 769 GLDDFGTGYSALTLLPQLPLDFVKVDKGYSHKSTHCERHRAVLESLVALSAELGFVLSAE 828

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            I      + L  +GC + Q     SP    
Sbjct: 829 GIEQPGQHQLLKGLGCRWGQGYLFNSPQALA 859


>gi|293409834|ref|ZP_06653410.1| cAMP phosphodiesterase [Escherichia coli B354]
 gi|291470302|gb|EFF12786.1| cAMP phosphodiesterase [Escherichia coli B354]
          Length = 799

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGTEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNLVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 10/146 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           I ++      S  +    + + L  AV      V   D  R  V        + G     
Sbjct: 116 IYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISE 175

Query: 445 MHGPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P
Sbjct: 176 ASGMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISP 230

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
           + +    +   +   +DITE+++  +
Sbjct: 231 VYDVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G I  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKI-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|320154933|ref|YP_004187312.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319930244|gb|ADV85108.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 1042

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/583 (19%), Positives = 222/583 (38%), Gaps = 19/583 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                + + +     + ++               ++   D              +LG    
Sbjct: 464  LFEARDITSRKLMEEKLYKRESNLRNYYEQQPVMMVTLDKNNRIQQVNRFAQQLLGYQPL 523

Query: 444  SMHGPIRNWLPYIHINDRDNF--RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             M G +          D      R +L       +G  + E   R  D    W+   IRP
Sbjct: 524  EMLGHLLQEFYC----DAQAMTPRQMLLQPTPALQGVWRREIEYRHQDGSAVWIRENIRP 579

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            ++  +G IL  +G   DI+  K+    +   A  D LT   NR  F   L   L    + 
Sbjct: 580  LT-ESGQIL-IVG--EDISHNKQLARQLEYQAKYDLLTDTFNRNQFDIELKRALREVESH 635

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              +   ++ ID+D+ K +ND  G   GD  +      + E+L    ILARL G+ F ++L
Sbjct: 636  RRVH-AMLYIDLDQLKVLNDTAGHDAGDGAIQFCASMLEEVLPHTAILARLGGDEFAVLL 694

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               N    I      +    + P    + +I +T SIG      +  +   +   A+ A 
Sbjct: 695  KDSNEHTAIGVAKTIIATLSSQPFIWEKVQINLTCSIGIRMIDHTAESPQMVHAQADTAC 754

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-LMDEEIV 736
            + AK +G N  + F + S    R   + +    +  A+ N  L L    II    + + +
Sbjct: 755  HAAKEQGRNRFKLFSLDSEELQRRQQEMESVNLVHDALANDRLELFAQRIIPLSKECDKM 814

Query: 737  GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
              E L +    +   +S + FM  +E   +   I+  ++ +    + +  D  +      
Sbjct: 815  HFEILTRIRDKQGEYLSPAIFMPASERYNIAHLIDEQVVTKTLDWLEAHPDALHQLG-RC 873

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             IN++   + + E    +   ++ ++    ++ L  +E+  M N   +     +++ +G 
Sbjct: 874  SINLSGHSMGNPEFMAFLLDRLTNSVIPCHKLCLEITETAAMKNVALAMDFFAQVKALGC 933

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             + LDDFG+  S   YL  +P D VK +G  +      E    ++R+I  +A+ +    +
Sbjct: 934  LIALDDFGSGLSSFGYLKQLPVDVVKIDGIFVQDMHRNESDHIMVRAINELAQQMGKVTV 993

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            A+ +     I +L  +G DY Q   +  P     ++   ++ F
Sbjct: 994  AEFVENNEIIAQLMELGVDYAQGYVIGYPTPLAELVAQWQDEF 1036


>gi|284989794|ref|YP_003408348.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284063039|gb|ADB73977.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 613

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/559 (22%), Positives = 235/559 (42%), Gaps = 25/559 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIAT---ILGLASGSM--HGPIRNWLPYIHINDRD-N 463
            +          D     +           +LG         G        ++ +D    
Sbjct: 55  VLDALPSPTLLIDAGGTVLLANTAWERAADVLGDDRVRFGVDGDYFAMARRLNGDDNTST 114

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L       R  +Q ++ +        W+ ++   + +  G +   +    D+T + 
Sbjct: 115 LVDQLRELSRGERSSVQADYALELPTG-IRWIHLQASRV-DQAGQV---VVTHTDVTSRV 169

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +       A  D LT +PNR    + + T L      D    +V+ +DID +K +ND L
Sbjct: 170 AAERASDWRARHDTLTELPNRAHLHELIDTEL---QRQDRGPVSVLFLDIDGFKDVNDSL 226

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGDD+L  +  R+    +  D + RL G+ F ++     ++      A   R  I  
Sbjct: 227 GHDVGDDLLRQVAARLTGSTRAGDTVGRLGGDEFVVLCRDC-DTTGAEALADRCRAGIDR 285

Query: 644 PINLLEREITVTASIGFASWTSSKIT---SSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           P  L  R + + ASIG A+  +S  T   S++++++A+LAMY AK  G N V  F     
Sbjct: 286 PFELGGRLVRLGASIGIATAAASGPTRVRSTDLVRDADLAMYAAKAAGRNRVRLFTADLR 345

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  +  +L  AVE+ +L L Y P++ L      G+EAL++W HP+ G ++ ++F+
Sbjct: 346 AAAQHRATVASELRDAVEDGQLVLHYQPVVHLPTGRCTGVEALVRWQHPRRGLLAPADFL 405

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IA +  ++  I  ++L    R   +W        +   +NI++  +    L   +Q  +
Sbjct: 406 PIAVQHDLMGVIARWVLHTATRQTAAWAAAGLN--LVTAVNISANHVAAGTLVADVQEAL 463

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + +   P ++ +  +E  V  + ER+      LR+ G+ +++DDFG   S L  L  +P 
Sbjct: 464 TDSGLPPEQLVVEMAERSVAEDVERAAAQFAELRRSGVEVSIDDFGGGFSSLGQLVAMPT 523

Query: 879 DTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             +K + SL+    G   +  A + +++ +A        A  +     ++  T +GC + 
Sbjct: 524 GLLKIDRSLVAYPEGRRSQAAAAIAAVVALAGACGVRTHAGGVETAEQLELATELGCTFA 583

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  H+A P+    +   L 
Sbjct: 584 QGFHLARPMPAEDLTGWLA 602


>gi|299535503|ref|ZP_07048824.1| signaling protein [Lysinibacillus fusiformis ZC1]
 gi|298728703|gb|EFI69257.1| signaling protein [Lysinibacillus fusiformis ZC1]
          Length = 699

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/434 (26%), Positives = 211/434 (48%), Gaps = 10/434 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++S + +   A+ D++T +PN    L  L   L            ++ I+ID++  I 
Sbjct: 249 DLEQSQQELRFQAYHDDITLLPNEHLLLKTLKENLHQHKAQK----AIIAIEIDRFAAIR 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             +GI+  + ++  +  RI  ++       +L   +F I +       ++  F + ++ +
Sbjct: 305 SSIGISNSNTMMKLVAERIQSIVPPHYFATKLREGQFVIYIDHVKTIEELLQFCLNLKSA 364

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSS 699
           +  P+ +    +  + +IG A +     T  E+L +A+LAM  A+            +S 
Sbjct: 365 MTDPLQVQLFSLNGSLNIGIALYEEQ-WTGEELLMHAQLAMREARQIPQRFLFYKPYMSK 423

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +DR+++++DL  A+ N+E YL Y P + L    I  +EAL++W HP  G +    F+ 
Sbjct: 424 GIADRILLEQDLHNALANNEFYLDYQPQVNLKTGTIESVEALVRWRHPTRGFVPPDVFIP 483

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  ++LE       +W  Q   PP+ + +N++   L   +L E +Q ++ 
Sbjct: 484 IAEECGLIIPLGKWILETACTQAKAWEKQGL-PPMKVAVNLSLGQLFQQDLVEMVQNILQ 542

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   PS ++L  +ES+ M N ++   LL  L+ +GI + +DDFGT  S LSYL   P D
Sbjct: 543 RTNLDPSFLQLEITESMTM-NIDQMTQLLHELKALGIQIAVDDFGTGYSSLSYLKEFPID 601

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +          A++  II MAK++   ++A+ I     +  L   GCDYIQ 
Sbjct: 602 CLKIDRTFVRNVPHNPNDEALVSMIISMAKHLRLKVVAEGIEEVEQLSFLIDGGCDYIQG 661

Query: 938 SHVASPLGFNSILK 951
              + P+    + +
Sbjct: 662 YLFSKPISPQQMTE 675


>gi|226942037|ref|YP_002797111.1| signal transduction protein [Laribacter hongkongensis HLHK9]
 gi|226716964|gb|ACO76102.1| Predicted signal transduction protein [Laribacter hongkongensis
           HLHK9]
          Length = 560

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 211/426 (49%), Gaps = 10/426 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A QD LTG+ NR++   +LT +     +  + R  ++++ ID+   IND+LG   GD
Sbjct: 126 RNQALQDELTGLGNRKALQQQLTHL----ESVPDTRVLLVLVHIDRMWVINDLLGFEAGD 181

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             L    RR+  L     +  R+SGN F +++ +   +       + +R+    P+ + E
Sbjct: 182 IALRLTARRLERLPLDHTVCFRMSGNVFALLVCNSQQAE-ADISELLIRELEGTPLRVDE 240

Query: 650 REITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-RVM 706
            ++ ++ ++G A +     +   S++   AE+A+Y AKH+     E   +   R   ++ 
Sbjct: 241 HQVDLSITLGLAGYPQADGRGDISQLSHYAEVALYAAKHQHRQWAEFNPLERERHHTKLS 300

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A+ N EL + Y P + L+    +  EALI+W HP+ G ++ SEF+  AEE   
Sbjct: 301 LLGELKRALANQELQVHYQPQVELITGHPMQAEALIRWKHPQRGWVAPSEFIPFAEETGR 360

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I+ +  +ML+ + + +  WR Q    P+ + +NI+  DL D      +   ++    SP 
Sbjct: 361 IRQLTDWMLDAVCQQVADWRRQL--IPLPVSVNISMCDLADPAFAGRVLGKLAAHSASPC 418

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +ES +M  PER    L  L + G+ +++DDFGT  S L+YL  +P D +K +  
Sbjct: 419 DLCLEITESALMAEPERVLHTLKELHRAGLRISIDDFGTGYSSLAYLSRLPVDELKIDRG 478

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +T  T    +I+RSI+ +   +  ++IA+ +      +E+   GCD  Q   +A PL  
Sbjct: 479 FLTDLTPHNRSIVRSIVSLGHALGLSVIAEGVETTEVYQEMQHAGCDLAQGYLIARPLPL 538

Query: 947 NSILKL 952
                 
Sbjct: 539 AEFETW 544


>gi|239994751|ref|ZP_04715275.1| response regulator/GGDEF/EAL domain protein [Alteromonas macleodii
           ATCC 27126]
          Length = 741

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 105/439 (23%), Positives = 201/439 (45%), Gaps = 14/439 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E       +   AF+D LT +PNR  F++    +LD          +V +ID++ +  IN
Sbjct: 313 ENVNLFHELRNAAFRDWLTRLPNRNEFIN----MLDKPHLFAGENYSVALIDVNHFSDIN 368

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VG+++L +++ R            R+  + FG+I   +           ++   
Sbjct: 369 DGLGQEVGNELLRAISDRFQSSFDSIVKKGRIGADVFGLIGPDD------LVCPKSINNI 422

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
                 + +  + V  ++G     + +    E+LK   +A+  AK    ++ E +   + 
Sbjct: 423 FQSSFQVGDHTLPVNITLGLCKLDNKRHIGIEILKRTNIALNRAKKNLTDNFEYYAKDIE 482

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              + R+ +   L       +L L + P + L++E++VG+E L++W + + G IS + F+
Sbjct: 483 DQTTWRLDMIRQLRSDFAARKLELWFQPQVDLLNEKVVGMEGLLRWPNGEGGYISPAVFV 542

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  ++LE   R +     +     + + +NI+     D    E ++  +
Sbjct: 543 PLAEYSGLIVDIGEWVLEESCRRLQEL-KEKGYGHLRVAVNISIPQFRDRLFVEKVKQAL 601

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     PS ++L  +ESVVM  P+     L  L++ G+ + +DDFGT  S +SYL  +P 
Sbjct: 602 SNANCDPSLLELEITESVVMDEPQIVIDALRSLKEFGVKIAIDDFGTGFSSMSYLQQLPL 661

Query: 879 DTVKFNGSLMTGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + S +        A+L  +I+ +   +    IA+ +        + ++GCD  Q 
Sbjct: 662 DRLKVDRSFVKDIKPGASAVLAETIVTLGNKLGLLTIAEGVEKREQASYMIKLGCDEAQG 721

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+ F+++L  L+E 
Sbjct: 722 YLYAKPMPFDALLAFLEEH 740


>gi|294142675|ref|YP_003558653.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
 gi|293329144|dbj|BAJ03875.1| sensory box/GGDEF family protein [Shewanella violacea DSS12]
          Length = 858

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 114/568 (20%), Positives = 233/568 (41%), Gaps = 23/568 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                +    I    E    ++    + V   D     V   P    +LG+    + G  
Sbjct: 290 ADRVNHLLAKIVQLKEHAKSSLGSISEAVILTDAEAKLVYLNPLAERLLGVKGPDVLGEK 349

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              +  +   DR+  + + D      R  +  + +++        +   I    N    +
Sbjct: 350 ---VDVLLKTDRNINQDLFDLMASRARQPILSKLKLQGE--STRIVERSISTRLNHKQLV 404

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +  + +  DIT+++     +      D +T + NR++F D+L        +       + 
Sbjct: 405 VGTVILLRDITQEELLKRKLHHRVNLDPITSLLNRRAFEDKLEAF-----SLGAQSIAIC 459

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             D++++K IND  G + GD +LV + R +   L    +LAR  G+ FG+ +   +++L+
Sbjct: 460 YFDLEQFKLINDSCGHSAGDRMLVMVARAMQSCLTQDQMLARFGGDEFGLAIRD-HSALE 518

Query: 630 IADFAIAMRKSIAMPINLLER---EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +A     +  S++M +   +       V  S G A   +  I+  E+LK+A++A + AK 
Sbjct: 519 VAQLTKRIVASVSMQVLQDKNNACHYKVGVSAGIAIARAPYISEKELLKDADIACFAAKG 578

Query: 687 RGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEAL 741
           +G N V  +                   +  A+E++EL L Y PI  +   +    +E L
Sbjct: 579 KGSNQVHFYDDKDKDLIFQRNAPMWAVRIGQAIEHNELLLYYQPIKGVGPGKHRQRMEIL 638

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++   P    ++ ++F+  AE+  ++  ++  ++ +    +    +        I IN++
Sbjct: 639 LRIQEPNGRILAPAQFIAAAEQFKLMSYVDKEVIRKAFLWLSMHEEIWEDH--CISINLS 696

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L    + + +     +       I    +E+  + N +R+  +L  LRK+G S  LD
Sbjct: 697 GNSLGAEGMVDYIIQQFERFAIPSECICFEITETSAIQNKKRAMEMLEYLRKLGFSFALD 756

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  +   YL  +P D VK +G  +       K  AI++SI  +   +    +A+ + 
Sbjct: 757 DFGSGFASYGYLKELPVDYVKIDGCFVKNLATNAKDYAIVKSIHDICGVMGIETVAEFVE 816

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  I +L  +G +Y Q   +  P   +
Sbjct: 817 NQDIIDKLQEIGINYAQGYAIGRPQPLS 844


>gi|149375598|ref|ZP_01893367.1| GGDEF [Marinobacter algicola DG893]
 gi|149360000|gb|EDM48455.1| GGDEF [Marinobacter algicola DG893]
          Length = 791

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/470 (24%), Positives = 209/470 (44%), Gaps = 15/470 (3%)

Query: 501 PMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P   + G++ +      D+ ++ +   E I   A  D +TG+PNR +FL RL        
Sbjct: 325 PRIRAGGELAQLRRALGDMLSKLRDREEQIHYAASHDEITGLPNRNAFLSRL-----RDQ 379

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +++   +VM + ++    +ND LG+  GD VL +++ R+ E L     LAR  G  F +
Sbjct: 380 FNNHRPCSVMGLRLNDISDVNDTLGLEFGDKVLRAVSARLEEALPGSSALARTGGAEFLM 439

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +   +     +   A  + + +  P+ +     ++  ++         I + ++ +   L
Sbjct: 440 MTGPQTQPE-LDKLATRISEIVESPLFIDNTPFSLRCTMVTLQLPQDAIDTDQVRRRLNL 498

Query: 680 AMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
               A K R                 + +  DL  A+ ++ L++ Y P + +        
Sbjct: 499 TFEQAQKSRLPVTHYQPGQDENHLRELQLISDLHHAIASNGLHMNYQPKLDMASASFHQA 558

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G IS  EF+ +AE+   I  +   +L R+A D   W        I + I
Sbjct: 559 EALVRWIHPDLGFISPEEFIFLAEQSGQITDLTRHILRRVANDAGKWHAAG--LKIGVAI 616

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++ DL   EL   +    S+     S I L  +ES +M  PE +   L RLR++G++L
Sbjct: 617 NLSALDLTRPELAREVADAFSQWQLPMSSITLEVTESALMEEPETAFETLRRLRQLGVTL 676

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LS L  +P   +K + S +    +  +   I+RS I MA  +   ++A+
Sbjct: 677 SVDDFGTGYSSLSQLRKLPVQELKIDKSFVLRLNTEPQDQLIVRSTIDMAHGLGLRVVAE 736

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI---LKLLKERFPLVKNT 963
            I        L   GC+  Q   ++ P+    +    + L +R P ++  
Sbjct: 737 GIENAESWALLRDWGCEIGQGFFLSRPVAAGDLKETEQSLTDRQPELRYA 786


>gi|242241326|ref|YP_002989507.1| cAMP phosphodiesterase [Dickeya dadantii Ech703]
 gi|242133383|gb|ACS87685.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Dickeya dadantii Ech703]
          Length = 861

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 224/445 (50%), Gaps = 9/445 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+++ + ++     D LTG+PN+      L  IL           T+  + +D++K IN
Sbjct: 412 EQEENRQRMVQLVQYDPLTGLPNQYHLQRYLDDILS---QQPTREVTLFSVGLDRFKDIN 468

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A GD VLV++T R+   L+  + L+R  G+RF I+     ++ + +     +R++
Sbjct: 469 EAFGHAAGDRVLVAVTHRLQAFLRAGEWLSRPEGDRFVIVAPDC-SAHRASLMTEQLRET 527

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSS 699
           I+ P+ L    ++++AS+G + +         +L NA++AMY AK  GG     S  ++ 
Sbjct: 528 ISQPVELDGHRLSLSASVGISHYLEGGSNRETLLDNAKVAMYRAKEAGGGYQFFSADMNV 587

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             S+R+++   L  A+ N EL L Y P IRL   E+ G+EAL +W  P +GN+ +S+F+ 
Sbjct: 588 AASERLLLGGALKRAINNGELELYYQPQIRLDSGELYGMEALARWYDPVFGNVPTSKFIA 647

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE++  I+A++ + L    R +  W       P+ + +N +       +L E +  ++ 
Sbjct: 648 LAEDIGEIEALSYWALCEACRQLSLWDLAGARVPV-VSVNFSPLCF-HRDLPETITTILQ 705

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               +  R+ +  +ES  M        ++ R+R  GI +++DDFGT  S LS L  +P  
Sbjct: 706 SFSLTGERLTIEITESAAMALTPDMLAVVHRIRGNGIGVSIDDFGTGFSNLSNLVNLPVT 765

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +    S E+  A++ +++ + ++++  ++A+ +  E     + ++G    Q 
Sbjct: 766 EVKIDRSFIDKCESEERLQALVEAVVGIGRSLKLEVVAEGVETEGQSALIGKLGGRIAQG 825

Query: 938 SHVASPLGFNSILKLLKERFPLVKN 962
              A P+  + +   L+E       
Sbjct: 826 YLFARPMKASDVPGWLQEYQAGKHR 850



 Score = 40.7 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 8/138 (5%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           I    +    A+  S   V   +     +        + G     M G     +  +   
Sbjct: 6   IPDSEQVLLSALEQSIVAVVLINDAGCVLLFNRAAEILWGYERQEMRGRP--VVSLLAPV 63

Query: 460 DRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            R  +   +  +        + + E+ +   D    W  + +  +   NG   R + +A 
Sbjct: 64  CRPAYLDAIRSNQADSTAGAKTKCEWLLERKDGGQFWGRLPLSKV-EVNGRTYRML-MAW 121

Query: 518 DIT--EQKKSLEGILCNA 533
           D++   + +    +   A
Sbjct: 122 DVSLDVEARWQNRLTMLA 139


>gi|294340619|emb|CAZ89009.1| hypothetical protein; putative EAL, GGDEF and PAS/PAC domains
           [Thiomonas sp. 3As]
          Length = 697

 Score =  393 bits (1009), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 231/564 (40%), Gaps = 24/564 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA--SGSMHGP-IRNWLPYIHI--ND 460
           +    +      V  +D         P    +  L      + G   R++  ++     D
Sbjct: 12  QMEDLLRHLPSAVVAFDAAGQVAQINPACLELFSLRRHPAELIGLGWRSFFDHLAPAFED 71

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            +     + + +       Q E R+R  D +   ++    P  +  G+I   +    D+T
Sbjct: 72  SEAELARIKTLIQQDAPD-QAELRLR--DGRI--VLRHYVPFVHE-GEIQGALWQLQDVT 125

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++  + +     +D LTG+ NR+ F  RLT +            T+ +ID+D +K++N
Sbjct: 126 AIQEQQKQLEYLTERDPLTGLLNRRGFDRRLTML--ERHPLGQHGFTLALIDLDDFKRVN 183

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL  +  R+  L++  D+ AR+ G+ F +++       +       + + 
Sbjct: 184 DTLGHPAGDAVLAEVADRLKALVRLTDMPARIGGDEFALLMPECRTEEQAVQIGERLLRV 243

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           +A P+ +   E+  + SIG A    S  +S+ M + A+LA+Y AK  G N  + F     
Sbjct: 244 MAKPMQIAGVELWQSCSIGLAVQRGSGRSSTPMFQRADLALYDAKTAGRNRFKLFSQRLK 303

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE----IVGLEALIQWDHPKWGNISS 754
                    +E L  A++   L L Y PI+ L  E     +   EAL++    +     +
Sbjct: 304 HQHDTLHHQREMLRDALQQGRLQLFYQPILTLEPEHNGFFVHKFEALLRLHDEQDQLRRA 363

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF     +  +   ++ ++L+   + +  W+ Q    P+ + INI+       +    +
Sbjct: 364 EEFETALADPQLGIEVDRYVLDAALQQLTFWKRQG--SPLRLAINISPHHFSHPDFVGTV 421

Query: 815 QALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +       P  + L  +E     +       +  LR++G+S++LDDFGT  + L++L
Sbjct: 422 RERLQAYPEVRPQELSLEITEHGPSLSSRVVNATILELRRLGLSISLDDFGTGNASLAHL 481

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                  VK + S +    +    +++   ++ +A+ +    IA+ +        L  +G
Sbjct: 482 QQFDVSVVKIDRSFVRDLLQDGIDLSLSYGMLRLARMLGINAIAEGVETRAQCAALCLIG 541

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
             ++Q    A P+    ++  L  
Sbjct: 542 FRHLQGYAFARPMPAEQVMGWLDS 565


>gi|289676297|ref|ZP_06497187.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 659

 Score =  393 bits (1009), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/577 (19%), Positives = 242/577 (41%), Gaps = 21/577 (3%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            +++   ++  + + +    G    +       V++  + T    Q      ++ SL + 
Sbjct: 89  IIFLTANEQTQDAVQKGYANGATDYLFKPFDPNVLKPKVQTLLEQQRNRRALQQLSLELE 148

Query: 413 GSG-----------DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +            + +   D         P I  +L  +   + G        I     
Sbjct: 149 SARAFNASVLANVAEGILVVDEAGTISFANPAICQLLNTSVDHLRGTQVLDY-IIEPKVG 207

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
               +              ++  +R A      + +    +          +    D++ 
Sbjct: 208 HWLDSGFYQHYRKSDTYRVHDAILRTAQGTQLPVALSCAALPAEQ---KAMVLTVLDMSV 264

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   + +   A  D LTG+ NR+     + ++L  +   D     V+ +D+D +K+IND
Sbjct: 265 VRDLYQQLEKQAVTDALTGLLNRRGLYQAVESMLLRNERADKY-LVVLFMDLDGFKQIND 323

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD VL+ +  +    ++  D+LAR+ G+ F +++   +   + A  A  + + +
Sbjct: 324 SLGHEAGDQVLLWVAEQFKATMRPYDVLARIGGDEFTVVIDGLDYPEQAAKIAEKLIERV 383

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           +    +   EIT+ AS+G A++         +L+ A++AMY AK  G      +  +   
Sbjct: 384 SGRRQVDGVEITLGASVGIATFPDCGSNLDGLLRAADIAMYEAKRAGRQQYRFYDQNMNG 443

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+M++E +  A++  +  +VY P I + D  + G EAL++W HP  G +  + F+ 
Sbjct: 444 RARSRLMLEESVRTAIDGRDFSVVYQPQIHVADGRLRGFEALLRWQHPAVGEVPPALFIP 503

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  +  ++ ++ A    +W      P + + + ++        L   ++  + 
Sbjct: 504 LLEETRLINRLGSWIFDQGAEQRQAWSHIFA-PDMVLSVCVSPTQFCLPNLASELKRAMD 562

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P +I++  +E+ ++ N   S   L  L ++G+ + LDDFGT    LS+L  +  D
Sbjct: 563 RFELKPGQIEVEITETALVNNLTHSHKQLKLLHEVGVRIALDDFGTGECSLSHLRNLQLD 622

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
           T+K +   +     +++  A+  SII +++N++  +I
Sbjct: 623 TLKLDRRFVANIVGSKREAAMASSIIDLSRNLDMLVI 659


>gi|126700585|ref|YP_001089482.1| putative signaling protein [Clostridium difficile 630]
 gi|255102077|ref|ZP_05331054.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255307945|ref|ZP_05352116.1| putative signaling protein [Clostridium difficile ATCC 43255]
 gi|115252022|emb|CAJ69858.1| putative signaling protein [Clostridium difficile]
          Length = 739

 Score =  393 bits (1009), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/434 (26%), Positives = 217/434 (50%), Gaps = 10/434 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K + + IL  A++D +T I N+  F    +  L       +L   ++  DI+ +K IND 
Sbjct: 313 KSNEKEILSLAYEDKVTYIGNQNKFYRECSKYLLD---KPSLNYIIVYFDINNFKMINDT 369

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L+++ + + E L   ++ ARLS + F I    +N   KI      +R +I 
Sbjct: 370 FGYEFGDNLLITIAKALKEELTEGEVYARLSSDYFAIFCDYKNGRNKIIRKLDNIRSNIE 429

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFR 701
             +++      ++  +G       ++   + +  A +A   AK       + +  V +  
Sbjct: 430 SNLSI---VFEISLCVGIYFVEEGEVDIQKAVNKANMARSVAKGKNINYAIYNEDVRNKL 486

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S+  MI +D+ +A+  ++  + Y P   L+  E++G EALI+W+HP+ G IS + F+ IA
Sbjct: 487 SEESMILDDIKIALVKNQFEVYYQPKFSLVTGEMIGSEALIRWNHPEHGFISPAVFIPIA 546

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  F+ ER+  D+  W+ Q     + + +N++  +L   ++ + +   I   
Sbjct: 547 EKSKLILKIGRFVFERVCNDLYEWKKQGKKI-VPVSVNLSRVELYQPDIVKFINKTIKMY 605

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   I++  +E+V +      + +L  LR  G S+++DDFGT  S +S L  +P D +
Sbjct: 606 NLSSDFIEIEITETVAINELNILKNVLNELRTYGFSISMDDFGTGYSSISCLRDMPIDIL 665

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G    E+   I +SI+ +AK+++  +I + +  +   + + + GCD +Q  +
Sbjct: 666 KLDKSFLGGIEHDERSRNIAKSIVSLAKSLDLVVIIEGVESKEQAELMKQFGCDLVQGFY 725

Query: 940 VASPLGFNSILKLL 953
            A P+   + L LL
Sbjct: 726 FARPMPAKNFLDLL 739


>gi|254502560|ref|ZP_05114711.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438631|gb|EEE45310.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 809

 Score =  393 bits (1009), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/628 (20%), Positives = 251/628 (39%), Gaps = 54/628 (8%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG-ERQSLAVLGSGDIVWDWDIVRDR 427
             +V   +L++++     ++ V +T   S    ++  ER + AV    D    +D  R  
Sbjct: 200 TLIVSFALLMIMMFLTRTMREVWSTLTASAKHVNEVNERFATAVEAIPDGFAVFDSKRRL 259

Query: 428 VTTTPDIATI---------LGLASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRR 476
           VT       +         LG+    +         Y  I   DR+ F     + +    
Sbjct: 260 VTCNEMYRQLAHPVPERVKLGMTGAEILQDAMEHGHYPDISEEDRNKFILDFRNKLEQDG 319

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN---- 532
            ++    +       +  + +      +        + I +D+++  +S   +       
Sbjct: 320 SQVSLVVQGER----YIQVKLTESAHGDK-------VVIRSDVSDFVQSNRKLQNLTENL 368

Query: 533 ----AFQ------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
               A        D LTG+ NR+     L                V+ ID+D++K++NDV
Sbjct: 369 ETAKAHYRRRSLEDALTGLSNRRKLDQALKAA------GGRGERAVIRIDLDRFKQVNDV 422

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD VL ++ R++    +  D++AR+ G+ F ++        +  D    + +   
Sbjct: 423 LGHDAGDHVLKTVARKLLTATREDDLVARVGGDEFVVLCAPGTELERAEDIGQRLLERTL 482

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            PI    ++   +AS+G A    S+   SE+L+NA+ A+Y AK  G   +  F   +   
Sbjct: 483 EPILYRNKQCVFSASLGLAVAEISRDDPSEILRNADAALYEAKAAGRASLRVFTGPLEQR 542

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            S    + +DL  A    EL   Y          + G+E L +W HP++G +  + F  I
Sbjct: 543 ISRDRRLADDLVEAFAGRELVPFYQTQHDAHTHAVTGIEVLARWQHPEFGLLPPALFFPI 602

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A +L +   ++L ++ R A D+     +    P  +  N+ S  L+D +  E  Q L  +
Sbjct: 603 AHQLGLDGDLDLAIMTRAAEDLAPVFAKTGTLP-RLAFNVTSSTLIDPDFPEFAQHLFKR 661

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  +     ESV + + + +    L  LR++G  L +DDFG+  + +  +  +   
Sbjct: 662 WQAP---VAFEILESVSLEDGDDTIPFALDTLRELGFELDIDDFGSGHASIKSVMQVRPH 718

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S++   G       ++ + I M +++   +IA+ +        L  +GCD +Q 
Sbjct: 719 ALKIDRSIILPLGEDPAAEGLVAATITMGQSLGLQVIAEGVETAQHAHRLAALGCDTVQG 778

Query: 938 SHVASPLGFNSILKLL--KERFPLVKNT 963
            H + P+    +   L   E  P  ++ 
Sbjct: 779 YHFSKPMPLKDLKTYLDGDEINPGNRSA 806


>gi|300939081|ref|ZP_07153772.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300455983|gb|EFK19476.1| PAS domain S-box [Escherichia coli MS 21-1]
          Length = 807

 Score =  393 bits (1009), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGTEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +     +  ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGINGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 G-PIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G    + L       ++R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDSLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|323937457|gb|EGB33734.1| AL domain-containing protein [Escherichia coli E1520]
          Length = 778

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 277 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 321

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 322 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 379

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 380 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 434

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 435 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTA 491

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 492 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 551

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 552 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 610

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 611 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 670

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 671 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 730

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 731 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 776



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 97  YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 156

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 157 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 211

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 212 DVLAHLQNLVMTFSDITEERQIRQ 235



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 7/115 (6%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            +   + +   P    + G     + G   + L  I  + R      +       + R++
Sbjct: 7   INENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIRHNREGGKARVE 64

Query: 481 Y---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               E ++   D    W    +  + ++ G +  Y+ +  D + +    E     
Sbjct: 65  GMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQL 117


>gi|89108332|ref|AP_002112.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli str. K-12
           substr. W3110]
 gi|162135902|ref|NP_416006.4| oxygen sensor, c-di-GMP phosphodiesterase, heme-regulated; cold-
           and stationary phase-induced bioflim regulator
           [Escherichia coli str. K-12 substr. MG1655]
 gi|170081160|ref|YP_001730480.1| cAMP phosphodiesterase [Escherichia coli str. K-12 substr. DH10B]
 gi|238900711|ref|YP_002926507.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli BW2952]
 gi|161789062|sp|P76129|DOSP_ECOLI RecName: Full=Oxygen sensor protein DosP; AltName: Full=Direct
           oxygen sensing phosphodiesterase; Short=Direct oxygen
           sensor protein; AltName: Full=Ec DOS; AltName:
           Full=Heme-regulated cyclic di-GMP phosphodiesterase
 gi|1742440|dbj|BAA15154.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli str. K12
           substr. W3110]
 gi|87081921|gb|AAC74562.2| oxygen sensor, c-di-GMP phosphodiesterase, heme-regulated; cold-
           and stationary phase-induced bioflim regulator
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169888995|gb|ACB02702.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli str. K-12
           substr. DH10B]
 gi|238860101|gb|ACR62099.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli BW2952]
 gi|260449388|gb|ACX39810.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Escherichia coli DH1]
 gi|309701752|emb|CBJ01063.1| heme-regulated cyclic AMP phosphodiesterase (direct oxygen sensor
           protein) [Escherichia coli ETEC H10407]
 gi|315136129|dbj|BAJ43288.1| cAMP phosphodiesterase [Escherichia coli DH1]
          Length = 799

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|307727371|ref|YP_003910584.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307587896|gb|ADN61293.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 657

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 104/437 (23%), Positives = 210/437 (48%), Gaps = 10/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  +     A  D+LT +PNR+SF   L   L   A        V +ID+D +K++ND+
Sbjct: 215 QRLSDENFRLASIDSLTDLPNRRSFFASL-RALSEQALASGGGFNVGLIDLDGFKQVNDI 273

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  +  R+  L +     ARL G+ FG++     +   + +    +  S++
Sbjct: 274 YGHASGDLVLQEVGARLLALAEPGIFFARLGGDEFGVLAQDRQSKEALLELGQRICDSLS 333

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +      ++ +IG+A++  +  T +++ + A+ AMY  K         F       
Sbjct: 334 QPYRVAGNIAELSGTIGWAAFPDAGQTVTQVFERADAAMYVGKESRRGTAVIFSTEHETR 393

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    + ++L  A   +EL+L + PI  ++    +GLEAL +W +P+ G +   EF+ I
Sbjct: 394 IRRSSLVTQELRHAELEAELFLEFQPISDVVTRRTIGLEALGRWHNPRLGAVKPEEFIRI 453

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I   +L +   ++  W  +     +++  N+++ D+  +     +  +++ 
Sbjct: 454 AERTEIILRITEVLLHKALAEVPHWPAE-----LYLSFNLSAIDISTSARARRLIDIVAT 508

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P R+    +E+ +  + E++R  L  +++ G  ++LDDFGT  S LSY+  +PFD+
Sbjct: 509 SGVPPHRVSFEITETALTRDFEQARSALTMIKEAGCRVSLDDFGTGYSSLSYVHRLPFDS 568

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S MT       +  I++S++ + KN+    + + +      + +  +G   +Q  
Sbjct: 569 IKIDRSFMTDVDSNSASKKIVKSVLDLCKNLGLECVVEGLETSSQAEVVKALGARAVQGY 628

Query: 939 HVASPLGFNSILKLLKE 955
             + P+   ++   L+ 
Sbjct: 629 LFSPPMRSGAVSGYLQA 645


>gi|332533542|ref|ZP_08409405.1| hypothetical protein PH505_aq00880 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037089|gb|EGI73547.1| hypothetical protein PH505_aq00880 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 697

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 211/433 (48%), Gaps = 7/433 (1%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   A  D LTG+PNR  F+D L   L  S ++D     +M  D+D +K +ND LG  
Sbjct: 255 HSMERLANYDILTGLPNRMFFMDLLKLELASSKSNDR-DVAIMFFDVDSFKGVNDTLGHE 313

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L ++ +++   L+  DI+ARL G+ F I+L +      + D A  + + +  P  
Sbjct: 314 TGDMLLQAVAKKVKSYLRSNDIIARLGGDEFLIMLPNITEQSIVIDIAEIIIEGMKEPFT 373

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV- 705
           + E ++    SIG AS   ++   +  + NA++AMY +K +G      F       ++  
Sbjct: 374 INEWDVPAGISIGIASAKEAEFDINTFISNADIAMYTSKEKGKGAYTIFHHKMLEDNKRK 433

Query: 706 -MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +   +  A+  +E  L Y   +     E  GLEALI+W   + G +S  EF+ IAE+ 
Sbjct: 434 AQVANLISHAIAQNEFELFYQLKMS-NTGEAQGLEALIRWQSKELGFVSPGEFIPIAEQA 492

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             IKAI  +++ ++ +D+   +       + + +N++S DL D+     +++ + +    
Sbjct: 493 GKIKAITQWVITQVFKDMQMLKQLMGNNVL-VSMNLSSHDLKDHNFIHTVKSKLLEHSVD 551

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S I+   +ES  + N E +     +++ +G S+ LDDFGT  S LSYL  I  DT+K +
Sbjct: 552 ISNIQFEITESSYLENFENANQFFNQVKVMGGSIALDDFGTGYSSLSYLTKIEIDTLKID 611

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +    S+ K  A+L++I+ + + +   I ++ I        L   G D +Q  + A 
Sbjct: 612 RMFVNQYASSAKDTAVLQAILDLGQRLGLKICSEGIETTDQANYLVSNGSDEMQGYYFAK 671

Query: 943 PLGFNSILKLLKE 955
           P+    +   ++ 
Sbjct: 672 PVCIAQLPHAIER 684


>gi|332532469|ref|ZP_08408347.1| hypothetical protein PH505_af00760 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038112|gb|EGI74559.1| hypothetical protein PH505_af00760 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 527

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/457 (21%), Positives = 198/457 (43%), Gaps = 12/457 (2%)

Query: 499 IRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
              +    G +   +      I + +++ +        DNLT +PNR +F   L+  +D 
Sbjct: 70  ATILFGGAGFVFLVVKLSLKSILKIEQATQYQKYQTEHDNLTTLPNRNNFFKSLSKQVDY 129

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            +        +  ID++ +K+IND  G   GD +L +   ++ + L     L R+ G+ F
Sbjct: 130 PS-----SFALFYIDLNNFKQINDAFGHQCGDQLLAAFANKLSKELCGIAKLYRIGGDEF 184

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             +L ++ +          +  ++  P    E+ + +  SIG + +        ++LK A
Sbjct: 185 AFLLNTDTDESMAHCV-NIINSAVKAPFCTHEQMVKIQLSIGVSRFPDDSRLPDQLLKKA 243

Query: 678 ELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            LA++ AK         S  +     D   +   +  A+   E  L   PI+   D ++ 
Sbjct: 244 NLALHEAKKTFQPLVNYSSEIGKRAEDFFDLSVKIKAALHKGEFELYLQPIMNSKDIQLH 303

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           GLEALI+W       IS  +F+ +AE   +I  ++ ++++     I   +         I
Sbjct: 304 GLEALIRWPQADGSFISPEKFISVAERTGLIFVLSKWVVQEAVNHIRKLKLFGFTG--TI 361

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N+++KD+  +E  E + +L++        +    +E  +M N   +R ++ +L   G 
Sbjct: 362 HVNLSTKDIESSEFYEFIISLLTTDPTLSDSLIFEITEGAMMTNIPAARKMMQQLSMRGF 421

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTII 914
             ++DDFGT  S LS L  +P + +K + S +          AI+ S + +A  +   ++
Sbjct: 422 KFSVDDFGTGFSSLSLLRELPINQIKIDQSFIKDMLINPPDYAIVESTLFLASRLNCDVV 481

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A+ I  +   + L  M CDY+Q    + P+  +  + 
Sbjct: 482 AEGIETKEVEQALLSMNCDYLQGYLYSKPINIDEFIN 518


>gi|88858994|ref|ZP_01133635.1| response regulator/GGDEF/EAL domain protein [Pseudoalteromonas
           tunicata D2]
 gi|88819220|gb|EAR29034.1| response regulator/GGDEF/EAL domain protein [Pseudoalteromonas
           tunicata D2]
          Length = 732

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 197/437 (45%), Gaps = 15/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K ++ +   A+ D+LTG+ NR  F++++ T       +      + +IDI+K+  IN+ L
Sbjct: 307 KLIDRLKDAAYTDSLTGLSNRTDFVEQIGTFAARKGRNHR----LYLIDIEKFSDINNGL 362

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VG+ +L +++ R+   L    I+AR+  + F I++       +       + + +++
Sbjct: 363 GQDVGNMLLQAVSSRLQAELPSAQIIARIGADVFAIVI------ERNVTSPQYINQLLSL 416

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P    E  + +  S+G         +  + LK   +A+  AK +   + E +        
Sbjct: 417 PFRAGEHLLPINFSLGICEEEYFDPSGLQTLKTGYIALNLAKSQSQFNYEFYLPEMEEKM 476

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +     L       +L + Y P I L  ++++G EAL++W       IS   F+ +A
Sbjct: 477 TWRLGIIRQLRQDFSEGKLQVWYQPQIDLATKKVIGCEALLRWPTDDGQFISPVVFVPLA 536

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  I  ++L +  +             I + +N++     + +  + ++  I++ 
Sbjct: 537 EYSGLIVDIGQWVLAQACQQQKELEALGY--KIRMAVNVSVPQFRNIDFVKQVKQTIAEH 594

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I+L  +ES+VM +P     +L  L+ +GI + +DDFGT  S LSYL  +P D +
Sbjct: 595 KVEPGFIELEVTESIVMDDPTAVIAVLTELKSLGIEIAIDDFGTGFSSLSYLQKLPLDRI 654

Query: 882 KFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + + +     E   AI   II + K ++   IA+ I  +     L + GC+  Q    
Sbjct: 655 KIDRAFIKDIPNEDAEAIAELIIALGKKMKLHTIAEGIETQAQADYLIKAGCEEAQGFMY 714

Query: 941 ASPLGFNSILKLLKERF 957
           + PL    +++ L+   
Sbjct: 715 SKPLPSRELVQFLQNYL 731


>gi|188491677|ref|ZP_02998947.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           53638]
 gi|256022831|ref|ZP_05436696.1| cAMP phosphodiesterase [Escherichia sp. 4_1_40B]
 gi|301018347|ref|ZP_07182853.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|307138139|ref|ZP_07497495.1| cAMP phosphodiesterase [Escherichia coli H736]
 gi|331642072|ref|ZP_08343207.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli H736]
 gi|188486876|gb|EDU61979.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           53638]
 gi|299882540|gb|EFI90751.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|331038870|gb|EGI11090.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli H736]
 gi|332343157|gb|AEE56491.1| putative enzyme [Escherichia coli UMNK88]
          Length = 807

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|145596454|ref|YP_001160751.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145305791|gb|ABP56373.1| diguanylate cyclase/phosphodiesterase [Salinispora tropica CNB-440]
          Length = 842

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/827 (17%), Positives = 315/827 (38%), Gaps = 49/827 (5%)

Query: 167 TPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAW 226
           + + P +       +   + +      +   V   LA   ++  +   +++L+   A + 
Sbjct: 2   SDSSPPVRRTTEQVWL--ITAPLAMVAVFCTVVLALATESSLGNLTITTALLVAMVAAST 59

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWR-----ACSEIALSSSLIIFLFMYLHWNRWHAK 281
            VL  I +    L  +       L  +        + + LS+ +  +         W   
Sbjct: 60  HVL-QIVVRRQALEVIATEIPLVLAFYYLPPLTVVAIMVLSAIVAQYWRRLAAVKVWFNV 118

Query: 282 VG--YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
                    G   +  L  +    P   A +      + V+          +    +A  
Sbjct: 119 ACKGAAASLGGVVLVGLSGVDGVGPRTWAVLFAAVTVNSVVSLIAISGVVSLLHGWQAGW 178

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            +     + +    + + I   L   +        L+ ++ +    + +         + 
Sbjct: 179 ELFRRSPVPLLVNSINVLIGLVLLLALESTWWSMLLIAVLAVAMVVIYRSYAQFLRQHRM 238

Query: 400 IFSDGERQSLAVLGSGDI-VWDWDIVRDRVTTTPDIATI----LGLASGSMHGPIRNWLP 454
           + S  E       G  +  + D  + R R     + AT+    LG     +     +   
Sbjct: 239 LSSMYELTRAMTEGGREGAIADVLLGRIRALMQAEYATLWLPALGRYPEMLLSARVDDRG 298

Query: 455 YIH----IND-RDNFRTILDSFVGYRR-GRLQYEFRVRAADNQ---FHWMIIRIRPMSN- 504
            +       D R+  R   ++    R   +     R  A           +   + +   
Sbjct: 299 LLDVAPTPADLREQVRESGETLAAGRALPKFPDISRDLAGHGVKDVIVVPLRSGKAVIGT 358

Query: 505 -------SNG-----DILRYIGIANDIT----EQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                  S+G     + +         T    E  + ++ +  +A+ D LT +PNR+   
Sbjct: 359 LEVVNRLSDGGHFTPEDIPVFETVAAHTAVALENSRLVDRLRYDAYHDTLTKLPNRRRVT 418

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           + L   +            +++ D+D+ +++N+ LG A GD VLV +  R+        +
Sbjct: 419 EALDEAVK--IRAPGEVVALLLFDVDRLREVNESLGRAAGDKVLVEVAARLRSRAPSSAL 476

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R+ G+ F + L    ++ +  D A  MR+ I   +      + V  ++G         
Sbjct: 477 VGRVGGDEFLVTLR-LADAAEARDLAARMREQIRAVVTFDGLALDVDTAVGITVHPDHGS 535

Query: 669 TSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
            ++ +L+ A+LA+  A+   G   + +  + S    R+ +  DL  A++N+EL + + P 
Sbjct: 536 GAAVLLQRADLAVTAARSASGNVQLFNPALESRSLRRLGLAGDLRRALDNNELEVYFQPK 595

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L D  +VG+E L +W+    G++S  +F+ +AE +  +  +  F+L    R    W  
Sbjct: 596 VNLRDRRLVGVECLARWEGGAHGSVSPEDFVAVAEHIGQLGRLTEFVLREGLRRSRDW-- 653

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P+ + +N++ + L D    E ++ L+ +    P R+ L   ES V+   +R   +
Sbjct: 654 AHGGHPLSVAVNLSPRTLTDRHFPERVRELLEEYGVPPQRLTLEIRESGVLDGTDRPIPI 713

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L  LR++G+ L++DDFGT    L +L  +P   VK +   + G       +AI+ +++ +
Sbjct: 714 LRCLRELGVRLSVDDFGTGDLSLVHLRRLPVHEVKVDRRFVQGMATDPGDLAIVNAVVTL 773

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++     ++A+ +  E+ ++ L  +GC+Y Q    + PL +  +   
Sbjct: 774 SQQFGLAVVAEGVESELTLELLQDIGCEYGQGFLFSRPLPYERLEAW 820


>gi|284921375|emb|CBG34443.1| heme-regulated cyclic AMP phosphodiesterase (direct oxygen sensor
           protein) [Escherichia coli 042]
          Length = 807

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 229/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLISVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 10/146 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           I ++      S  +    + + L  AV      V   D  R  V        + G     
Sbjct: 124 IYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISE 183

Query: 445 MHG-PIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             G    + L       ++R   + +L      +  R Q EF +     +  W+   I P
Sbjct: 184 ASGMQPDSLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISP 238

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
           + +    +   +   +DITE+++  +
Sbjct: 239 VYDVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G I  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKI-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|146306259|ref|YP_001186724.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145574460|gb|ABP83992.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 779

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/519 (25%), Positives = 235/519 (45%), Gaps = 22/519 (4%)

Query: 439 GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G    ++               DR      L + +    G L     +     +      
Sbjct: 249 GYRVEALLHKSLGEAEAAFAPLDRRILLISLGAMLASLIGALLLARSLSRPVRELAAAAQ 308

Query: 498 RI------RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF---QDNLTGIPNRQSFL 548
           RI      +P++ +  D L  + +A +   Q+   E     A     D LTG+PNR   L
Sbjct: 309 RIGRGDYQQPVALARSDELGLLALAVN-DMQRGIAERERQLAHNALHDALTGLPNRTLAL 367

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +RL + +            ++ + +  +  IN+  G   GD  L  L RR+   L+  D 
Sbjct: 368 ERLGSAITA-----GRPTALLYLGVGNFAAINESCGQGGGDLALQQLARRLQATLRPGDS 422

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LARL G+ F ++L   + S  +A  A  + + +  P+ +   +I +   IG A++ +   
Sbjct: 423 LARLVGDEFLLLLEQCDGSSAVAS-ADRLHQLLLKPLRIGTLDIALDCRIGIAAYPADGD 481

Query: 669 TSSEMLKNAELAM-YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           T  ++L+ A +AM   A+H G   +      + +  ++ +  DL  A    +L L Y P 
Sbjct: 482 TPDDLLRRARIAMQDAAQHSGRLQLYQQGRDAAQQRQIRLIRDLRHAAAQGQLLLHYQPK 541

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + + +  +   EAL++W HP+ G +S  EF+ +AE    I+ ++ +++E   R +  W  
Sbjct: 542 LDIREGLVRQAEALLRWQHPQLGMVSPGEFIPLAERTGSIQLLSAWVIEEAMRQLQEW-- 599

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                 + + +NI++ DLLD EL   + AL+++   +P ++    +ES VM +PER+  +
Sbjct: 600 DGRGIWVQLSLNISTADLLDAELPGRVGALLARYRVAPEQLIFEITESGVMLDPERALQV 659

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPM 905
           L  LR  GI L++DDFGT  S L+ L  +P   +K + S +       +   I+RS I M
Sbjct: 660 LHGLRGYGIGLSVDDFGTGYSSLAQLKRMPVQELKIDQSFIRELDDHSEDSVIVRSTIEM 719

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           + ++   ++A+ +     +  L R  CD  Q   ++ PL
Sbjct: 720 SHSLGLKVVAEGVELASGLNLLQRWHCDTAQGYLISRPL 758


>gi|332992612|gb|AEF02667.1| putative diguanylate cyclase/phosphodiesterase [Alteromonas sp.
           SN2]
          Length = 591

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 207/437 (47%), Gaps = 6/437 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A  D+LT +PNR          L            ++ ID+D +K IND LG A 
Sbjct: 154 QIQHLAHHDSLTNLPNRLYGETLFNLSLRECEESGQ-SLALLFIDLDNFKPINDALGHAA 212

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L SLT ++ E+L     L R  G+ F +I      S ++   A ++    A   ++
Sbjct: 213 GDQLLKSLTEQLNEILLPRQYLIRFGGDEFLVIAPFNPQSDELTSLANSLIGQCASVFDI 272

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
            + ++TV+AS+G AS         ++ + A++AMY AK  G N    +         ++ 
Sbjct: 273 FQNQVTVSASLGTASAPKDGTDFKQLCRKADIAMYKAKQDGRNTYHHYDESLDKASENKF 332

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            + + L  A+   +  L Y PI+ L    I  LEAL++W  P    I    F+ +AE   
Sbjct: 333 KMLQLLRPALSEQQFELHYQPIVELKSGNINTLEALLRWPQPDGSMIPPDLFIPLAESSG 392

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  +++ +  +     R Q     I I +N++     D +L   +++ + +    P
Sbjct: 393 LINELGSWVVRQATQFCAQLRQQ-GHSDIRIAVNLSVMQFKDGQLQRTIESALYEAGLPP 451

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES+++   E+ +  L  L K+GI++ +DDFGT  S L YL       +K + 
Sbjct: 452 EALELELTESLLIDETEQIQKQLASLSKLGITIAIDDFGTGYSNLGYLRNFNASKLKVDR 511

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S ++    +E   +++ +II MA ++    +A+ I  +  +++L  +GCD  Q  + + P
Sbjct: 512 SFISPLCFSEHDESLVGAIINMAASLGLKTVAEGIEDDETLQKLLSLGCDIGQGYYWSKP 571

Query: 944 LGFNSILKLLKERFPLV 960
           L  N++++ L  R  L 
Sbjct: 572 LPENALIEYLLNRNTLS 588


>gi|134098577|ref|YP_001104238.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911200|emb|CAM01313.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 702

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/573 (21%), Positives = 239/573 (41%), Gaps = 13/573 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A     + + +   R     + S   +    +        P +  I       + G  
Sbjct: 132 LRARDAAEEALRASEARSRAVFVSSALGIAIAGLDGTIDEVNPSMEQIFDGVGTQLVG-- 189

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +  +   + RT           R Q + R    D    W  +    + ++ G+ 
Sbjct: 190 GTLFDLVDEDWLADLRTADAELAAGETERFQRDLRYTRPDGAHIWTQLSASLVRDARGEP 249

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              I +  DITE+    E     A  D LTG+ NR     RL + L+   T    R  + 
Sbjct: 250 GYQILLYEDITERHMLQEQFRRQATHDPLTGLANRTLLKTRLDSALE--QTYPGRRVGLC 307

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSL 628
             D+D +K +ND LG  +GDD+L ++  RI  +     +L AR+ G+ F ++      + 
Sbjct: 308 YFDLDGFKAVNDSLGHPIGDDLLRAIAHRIQTVTGQEGMLTARMGGDEFVVLTPDSQGTA 367

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              +    M   I  P+++   E+T +AS+G      +  +  E+L++A++ +Y AK  G
Sbjct: 368 GQLELVERMLAEITRPVHIGGHELTASASVGVVEREVAGTSPDELLRDADITLYRAKAAG 427

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +    F        R+   +   +  A++ ++L++ Y PI+ L    +VG++A ++WDH
Sbjct: 428 RDQWTLFDPERNADARMRFKLSAAMPAALQQNDLFVEYEPIVWLETGAVVGVDARLRWDH 487

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            + G +    F+ +AEE  MI  +  +MLER+    ++W  +         +N++ +   
Sbjct: 488 AELGELGEEIFVGLAEETGMIARLGSWMLERVCEHALAWVRRFGQAAPVAGVNLSERHFR 547

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D EL   +Q ++  +   P  + L   ES +  +       L  L ++G+   + DFG  
Sbjct: 548 DPELVGDLQRILRTSGLPPRHLALGVPESALFDHGGDPLDALEILAEMGVRPAIYDFGRD 607

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT------GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            +L+  L  +P + V+  G  +       G       ++ S++  A+ +   ++A+ ++ 
Sbjct: 608 HALVPRLRPLPLNAVQITGEYLDSFAEPGGPDPLDEHLVFSLVESARLLRLPVVARGVHT 667

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   K L R+G   +Q  +   P     I  ++
Sbjct: 668 DEQAKRLQRLGVRGVQGPYTGGPASAGEIAGMI 700


>gi|326318484|ref|YP_004236156.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375320|gb|ADX47589.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1012

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 204/431 (47%), Gaps = 13/431 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+ +R+  L++L +              V+ +DID++K +N   G  VGD+VL  
Sbjct: 565 RDALTGLVDRRHLLEQLASE-RGPMAGGEGPTGVICLDIDQFKLLNVAHGTQVGDEVLCE 623

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLE 649
             RR+  +L+  D LAR   + F ++L +E          +   A  +  S+A P N  +
Sbjct: 624 TARRLKRVLRRGDTLARTGSDEFVVLLRTEGRIDHDVRHLVEGVAAKLLHSLAAPFNAGQ 683

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMI 707
             +++ AS G +   +   +  + L+ A+LA+  +K +GGNH   F  +        + +
Sbjct: 684 GSLSIRASAGISLIHAHTASGLDALREAQLALRRSKTQGGNHPVFFEENMLAGFHERLAL 743

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL  A+ + +L+L   P     + ++ G EAL++W HP+ G +   +F+ +AE   +I
Sbjct: 744 EQDLHAAIGSEQLFLQIQPQHDARN-QLTGGEALLRWRHPERGMVPPDQFIALAEASGLI 802

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L+   R +     +   P + + INI+          + ++  ++ T    S 
Sbjct: 803 IELGTWVLKTGCRILADLHRE--DPSLTLAINISPAQFKHPGFVDEVRHALAATGACASG 860

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E +++ +   +   L  L ++G+  ++DDFGT  S L+YL  +P   +K + S 
Sbjct: 861 LILEITEGLLITDVNHAAERLAELVELGVRFSIDDFGTGFSSLAYLRQLPLYEIKIDRSF 920

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G      +  I+ SI+ M  ++   ++A+ +  +     L    C   Q      P+ 
Sbjct: 921 INGLPGDTASVGIVCSILSMGSHLGLHVVAEGVETQEQSDFLQANRCPSQQGWLHGRPMP 980

Query: 946 FNSILKLLKER 956
             + L+ ++ R
Sbjct: 981 EETFLESVRAR 991



 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 142/390 (36%), Gaps = 22/390 (5%)

Query: 311 ARITLASIVLYYTYFIIY--HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
           A++ +A  VL      ++     +   + +  + A + + +      ++I  R   D + 
Sbjct: 152 AQLVVAITVLLAGVLGVFSMLARRMLSQPMHRLAAELAMIMPGTARRISINPRHAVDEVG 211

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
                   L+ +         +       + I +   R       +   ++        +
Sbjct: 212 IVTTAVNRLLELQQDA-----LERERGMREEISALEARYRGIFDSTSAGIFILSPAGQLL 266

Query: 429 TTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYE---F 483
              P    +L L +G  ++    +++P          R   L   +   R  L+ E    
Sbjct: 267 HANPAFERLLHLQAGQEINAHAGDFIPTF------FVRSAQLLQLIERARTSLEPEAEDL 320

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            +   D    W+   +  M ++        G+  DIT +K         A  D LTG+ +
Sbjct: 321 ELIRPDGTKVWVHCMVSCMESAGAPEQYVEGVLYDITRRKNQESAARYRAEHDALTGLKS 380

Query: 544 RQSFLDRLTTILDLSATDDNL-RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           R      L   +       +    T+M ID+D +K +ND  G A GD VLV   +R+  L
Sbjct: 381 RSYIEALLGQHIHAIHPGHDPGDVTLMFIDLDGFKSVNDRWGHAAGDAVLVEAAQRLRML 440

Query: 603 LKFP-DILARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINL-LEREITVTASIG 659
            +   D++ RL G+   +I+   +     ++D A  +  S   P  L       V AS+G
Sbjct: 441 FQRNCDVIGRLGGDELVVIIAGVDALHPSVSDLAQQLIDSFKAPFVLPNGESARVGASVG 500

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            AS+ +   +   ++  A+ AMY  K  G 
Sbjct: 501 VASYPAHATSVKTLIHAADAAMYAVKQAGK 530


>gi|332095577|gb|EGJ00589.1| putative enzyme [Shigella boydii 3594-74]
          Length = 799

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/526 (23%), Positives = 229/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +    I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSALIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R    LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNHDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             A+ + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|300922704|ref|ZP_07138797.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300420954|gb|EFK04265.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
          Length = 442

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 210/443 (47%), Gaps = 13/443 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+KS + I      D +TG+PNR +  + L  ++D +     + P V +I +D  + + 
Sbjct: 7   EQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDKA-----VSPVVYLIGVDHIQDVI 61

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A  D  L+ +  R  E LK    L R+ G +F  ++  EN+   I   A  +R  
Sbjct: 62  DSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFV-LVSLENDVSNITQIADELRNV 120

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ PI + ++   +T SIG +           +L  A  AM + +  GGN  + F  +  
Sbjct: 121 VSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMN 178

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +  +     L  A+ N++L LVY P I     E+ G+EAL +W  P+ G++  S F+
Sbjct: 179 EMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSRFI 238

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE+  I+ I  +++    R +  WR Q    P  + +N+++     N+L   +   +
Sbjct: 239 PLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA-LSVNLSALHFRSNQLPNQVSDAM 297

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                   ++ +  +ES++M +       +  LR +G+ L++DDFGT  S LS L  +P 
Sbjct: 298 HAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPV 357

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +     ++   A+L +I  + +++  T++A+ +  +   + L ++ C  IQ
Sbjct: 358 TEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQ 417

Query: 937 DSHVASPLGFNSILKLLKERFPL 959
               + PL    I   +    PL
Sbjct: 418 GYFFSRPLPAEEIPGWMSSVLPL 440


>gi|323497443|ref|ZP_08102461.1| EAL domain-containing protein [Vibrio sinaloensis DSM 21326]
 gi|323317526|gb|EGA70519.1| EAL domain-containing protein [Vibrio sinaloensis DSM 21326]
          Length = 591

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 200/438 (45%), Gaps = 10/438 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E     +  D LT +PN  ++ +      D     + +   ++ + ++ +K +ND 
Sbjct: 153 RQQAEKFHQESLTDYLTKLPNANAYRE----ATDSINKSNAVLYGLIHVGLEGFKNVNDR 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG   GD +LV+    + +L+     + R  G+ F I++ S+     +   A  + K   
Sbjct: 209 LGYRHGDALLVTFASHLKDLVGERGKVFRFGGDEFVILVESKTLDTTLEGLAKELTKHQK 268

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
           +  ++      +   +G A    +K       KNA+ A+Y A+  G   V  F       
Sbjct: 269 VMFSIDNTSHRLAYCLGIALALDAKGNRELWAKNADFALYKARTEGPGSVCWFDDELLKE 328

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ ++  A++N +  L Y P + +    I+G EALI+W HP  G IS +EF+ +
Sbjct: 329 TIRQHQIETEIKDALKNDQFVLQYQPKVTICGSTILGAEALIRWRHPHLGPISPAEFIPV 388

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  +  +++ +         DQ     + I +N+++      +L E +   + +
Sbjct: 389 AEKTTQIVPLGKWIIYKACDQAKRLHDQGFD--MCIAVNVSTVQFAHADLFEVVCQALRE 446

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T      +++  +ES +M +P+    +  +LR IG+++ +DDFG + S L YL  +P D 
Sbjct: 447 TQLPSHLLQIEITESTLMSDPQHITDICRQLRAIGVTVAIDDFGVEYSCLKYLKQLPIDV 506

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +     +     ++ +I+ M  ++   +IA+ +  E  ++ L  +GCD  Q  
Sbjct: 507 LKIDKCFVDECALSHSDKVLVNTIVQMGHSLGIKVIAEGVEYEEQLEVLREVGCDQYQGY 566

Query: 939 HVASPLGFNSILKLLKER 956
             + PL +     +L++ 
Sbjct: 567 LFSQPLSYAEFFSMLEQE 584


>gi|152993544|ref|YP_001359265.1| hypothetical protein SUN_1965 [Sulfurovum sp. NBC37-1]
 gi|151425405|dbj|BAF72908.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 604

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/606 (19%), Positives = 236/606 (38%), Gaps = 25/606 (4%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +        LV   + +++ +   +         F   +    +    A     D V   
Sbjct: 11  ISQQFTPTTLVVFSITLILFLALYIFSVKREKRKFQAMVSGKIDVMQKAFEVCKDAVLIL 70

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
              ++ +     +  +L L        + N +      D       L   +  +R     
Sbjct: 71  SRKQEILYANKPMRKLLKLDEDYQKTVLDNSIKV----DMGKEWRTLSRLIKEKRTE-NE 125

Query: 482 EFRVRAADNQFHWMIIRIRPM--------SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +R      +         P+           +G     I   +D+TE+K+  E   C+ 
Sbjct: 126 SYRFSLMQTKLLTHEKNEIPVNFYIDTAEEEDDGSSRWSIVSIHDLTEEKQKEEAEYCH- 184

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
               LT +PN+   L  +  +L+      + +  +++IDID    +  ++G    + +L 
Sbjct: 185 ---RLTNLPNQIKALQDIN-VLNARLHLSDAKIALVLIDIDNLSVLRSIIGYEQTNAILK 240

Query: 594 SLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                +  L K           N F + +   ++  +I      +++ +     + E  +
Sbjct: 241 KFAEYLKNLAKEYHFTPYHTFYNNFLLTVTDVDDIDEIKALTEKIQEELCTFYKIGENRL 300

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710
            ++AS+G + +  S      +  NA  A+  A+  G    E + +   + D   + +  D
Sbjct: 301 YLSASMGISIYPDSGPMI-RLFDNAYRALAKAEKAGYGRTELYLLEKKKYDYDELTLYND 359

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +   +E  +  + Y PI+    +EI   EALI+W HPK+G I    F+ I E+   I  +
Sbjct: 360 MHAGLEREQFEVYYQPIVDSKSKEIASAEALIRWRHPKYGMIPPDVFIPIMEKTGFIVEL 419

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             F+L  + R    W +      I + IN++  +L        +   +     +P  IK 
Sbjct: 420 GKFVLNEVLRQQKRW-ELFKFQQIEVSINLSLLELESGNFVNNVLDRLKHHQVNPELIKY 478

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E + M N ERS      LRK+G+++ LDDFGT  +  +YL   P  T+K +  L+  
Sbjct: 479 EITEGLAMKNEERSSQQFIELRKLGVAIVLDDFGTGYTSFAYLKRFPATTLKIDKELIDC 538

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               E+   I++SII +  ++   ++ + I  +  +  L   GCDY+Q  + + PL    
Sbjct: 539 IITNEENQHIVKSIINLGHSLGMKVVIEGIENKNMVDLLENYGCDYMQGYYFSRPLPVFE 598

Query: 949 ILKLLK 954
             K+L+
Sbjct: 599 FQKMLR 604


>gi|145225023|ref|YP_001135701.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
 gi|145217509|gb|ABP46913.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
          Length = 765

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 142/764 (18%), Positives = 287/764 (37%), Gaps = 86/764 (11%)

Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312
           +R  + + L+++L++ +  +  W +  A +       +   A+      +       ++R
Sbjct: 4   YRIRASVVLAATLLVLVNGFAPWGQ-AAALRVDAILQVCTAAVAVVYGLWVARRVHGVSR 62

Query: 313 IT--LASIVLYYTYFI--IYHGMKGYERAVLLIPAWILIFIWFI-GLWMAITKR------ 361
               LA   +        ++    G    V +IP  + + +     L +    R      
Sbjct: 63  TWRLLAVGAVAGLLVGELVWWERAGLLPLVGVIPYLLFLILGLASMLVLVGAGRGISVPA 122

Query: 362 -----------LDNDIIQPALVGGLVLIV-----------------ILIGFTVIQHVLAT 393
                      + + ++  A    LV +V                 I IG+ V Q V+  
Sbjct: 123 DGSLRYTAVITVLDGLVAAAAFAILVFLVRYGAYSSSSWPHSSSPPIEIGYAVFQLVVVV 182

Query: 394 GYFSQGIFSDGER------QSLA----VLGSGDIVWDW-DIVRDR-VTTTPDIATILG-- 439
                G+    +R        LA    +  S D V  + D + +        +  +LG  
Sbjct: 183 VAAVVGMMYAADRPFRSNFLQLACGVVMAISSDRVIAYFDSIGNEGAQIWAGVGLVLGPL 242

Query: 440 ---LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH--- 493
               +        R     +   D          F+      +   + +           
Sbjct: 243 LIAFSFRERTDATREPAETMRPMDWAQMTLPYAGFI---GITILQAYHLLT--GHTIGRG 297

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF---QDNLTGIPNRQSFLDR 550
            +   +  +          +G    +T  +K  E     A     D LTG+PNR  F  R
Sbjct: 298 VVATTLVMVVLVAARQTVAMGTQRQLT--RKLYEAQRGLAHQVHHDALTGLPNRLMFAQR 355

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   +       +    ++ +D+D +K++ND  G A GD++L ++  R+   ++  D LA
Sbjct: 356 LEAAV------QHGDFVLIFVDLDDFKEVNDRFGHAAGDELLCAVGERLRRHVRSEDTLA 409

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--I 668
           R+ G+ F I++    +  ++   A  +R ++  P  +    + V AS+G      +    
Sbjct: 410 RIGGDEFAILIDGVRDIPEL--IADRLRVALRDPFPVHGSSLRVRASMGLVRSGGAGGLQ 467

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           T  ++L+ A+++MY  K  G +    ++ S+                      L Y P++
Sbjct: 468 TPDDLLRQADISMYAGKRLGKDTAVVYQPSAGVRAEFPAALREAQGGVPDGFTLAYQPVV 527

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L D+    LEAL +W  P    I+   F+ +AE   +   ++  +L    R++      
Sbjct: 528 HLPDQTPAALEALARWTAPNGILIAPETFVAVAEASGLGATLDAMVLRLACREVKD---- 583

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + I +N+ +  L +    E +     +    PSR+ L  +E+V + +   +   +
Sbjct: 584 -AGLDVDIHVNVGAARLGNPTFEEQVHRTFDECGMEPSRLVLEITETVPIVDLADAAAQI 642

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAK 907
            R + +GI + LDDFG   + L+YL  +P D VK + SL  G+  +R  A+ RS+I +  
Sbjct: 643 ERFKALGIRIALDDFGAGYNSLTYLHALPVDIVKLDRSLAVGADPERDLALYRSVIGLCT 702

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++   ++A+ I  ++    +   GC + Q      P+  + + +
Sbjct: 703 DLGMDVVAEGIETQLQADTVHAAGCAFAQGHLFGKPVAISELTR 746


>gi|323978343|gb|EGB73429.1| EAL domain-containing protein [Escherichia coli TW10509]
          Length = 807

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 229/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGTEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLILGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQVWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 10/146 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           I ++      S  +    + + L  AV      V   D  R  V        + G     
Sbjct: 124 IYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISE 183

Query: 445 MHGPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P
Sbjct: 184 ASGMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISP 238

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
           + +    +   +   +DITE+++  +
Sbjct: 239 VYDVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G I  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKI-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|304309682|ref|YP_003809280.1| hypothetical protein HDN1F_00300 [gamma proteobacterium HdN1]
 gi|301795415|emb|CBL43613.1| hypothetical protein HDN1F_00300 [gamma proteobacterium HdN1]
          Length = 1213

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 221/442 (50%), Gaps = 8/442 (1%)

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT  +   E +   A  DNLT +PNRQ   +R  + L+ +      R  +M++D++++K+
Sbjct: 763  ITNARHLRE-LEHQANHDNLTHLPNRQVLHERFASALNANP--SPRRMALMLLDLNRFKE 819

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND +G   GD +L   +RR+  + +    +  RL G+ F +++ +  N  ++   A  +
Sbjct: 820  INDTMGHHAGDLLLQQTSRRLARIAETYHVLACRLGGDEFTLLMPTYENQQEVLTLAENV 879

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              ++  P+ +  + + + ASIG A +      S  +L+ A+ AMY AK +G + V     
Sbjct: 880  ANTLRHPLLINGQNVQICASIGVALYPDHGHDSHTLLRAADTAMYRAKRQGADIVLYQAQ 939

Query: 698  SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              +  +++ I   L  A+E  EL L Y P I L  + I G+EAL++W HP  G +    F
Sbjct: 940  DQYSPEQLSIATALNQAIEGRELVLHYQPKIALNSKTITGMEALVRWQHPTLGFLYPESF 999

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE+   I  +   +L+        W+       I + +N++++ L +  + E +  L
Sbjct: 1000 VPVAEQGEAIHKLTYRILDMALAQQKEWKRLGYR--ISVAVNLSTRSLANERILEMLSEL 1057

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + K       +++  +E+ +M +P+ S  LL  +  +G++L++D+FG   S LS+L ++P
Sbjct: 1058 LDKHGAVSGDLEVEITEAALMQDPDFSAKLLHDIADMGVALSIDNFGIGFSSLSHLRHLP 1117

Query: 878  FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              T+K +   +    +      ++RS I +A N+  T+IA  +  +    +L  MGCD +
Sbjct: 1118 ISTLKIDRKFVQKMLDNDLDALMVRSTIGLAHNLNMTVIAGGVEDDQTCTKLELMGCDVV 1177

Query: 936  QDSHVASPLGFNSILKLLKERF 957
            Q   +  P  +  +   L E +
Sbjct: 1178 QGHFLTQPRTWPDLCHWLDESY 1199



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 90/317 (28%), Gaps = 30/317 (9%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
                +        I          +  ++F  +     R      Y+          + 
Sbjct: 160 LWHSPLAEQISPNHIISDLVYPLTLALPVVFGLVLTLTLRTRIHWSYVAVFFGCSALAIL 219

Query: 298 CMSFYYPMVTASIARITLASIV--------------LYYTYFIIYHGMKGYERAVLLIPA 343
             + +  ++T ++    ++ I               L           + Y + +  IP 
Sbjct: 220 HANAWLQILTHNLFTQQMSRIGESAALLLIAGAASKLQLNASYAPQTTRLYSKILRGIPT 279

Query: 344 WILIFIWFIGLWMAITK---RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
            I++F     +   +        ++I+       L+  +      + +H     Y  + +
Sbjct: 280 IIVVFTCIGAMQTLLAHNSSPEASNIVIAGTALTLLFAMTRQSDILNEH-NRLLYTEKAL 338

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             +       +  S D +  W +    V        + G++   + G     L       
Sbjct: 339 REEELHYQALLESSTDGILVW-LDGRIVDCNHTAPQLFGISRNELIGKSVYELS---PEL 394

Query: 461 RDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           + +     +             +L +E+R    D       I +R + ++     R+I +
Sbjct: 395 QASGELSEEQAQKLFVRGANAQKLSFEWRHTRGDGTAFDAEITLRQLGSNK---QRFISV 451

Query: 516 ANDITEQKKSLEGILCN 532
             DI+E+K +   I   
Sbjct: 452 TRDISERKNAEREIRHQ 468


>gi|218689402|ref|YP_002397614.1| cAMP phosphodiesterase [Escherichia coli ED1a]
 gi|218426966|emb|CAR07832.2| cAMP phosphodiesterase, heme-regulated [Escherichia coli ED1a]
          Length = 799

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVISEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|15805003|ref|NP_287666.1| cAMP phosphodiesterase [Escherichia coli O157:H7 EDL933]
          Length = 804

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/526 (23%), Positives = 228/526 (43%), Gaps = 41/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           + +         VI +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 AVSP--------VIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 460

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + +    +T SIG +           +L  A
Sbjct: 461 V-LVSLENDVSNITQIADELRNVVSKPIMIDDNPFPLTLSIGISY--DVGKNRDYLLSTA 517

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 518 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 577

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 578 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 636

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 637 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 696

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 697 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 756

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 757 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 802



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSXELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|152989870|ref|YP_001355592.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421731|dbj|BAF69235.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 737

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/441 (26%), Positives = 210/441 (47%), Gaps = 15/441 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+E     +  L  A  D LT +P R  F   +   ++           +++ID+DK +K
Sbjct: 300 ISEIMLQQKADLLLAT-DPLTALPTRDIFFKEIDANIEYEQ-----HFAIVLIDVDKLRK 353

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +NDV+G   GD+VL  L   + + L    I+AR+  + FGII+       +I      + 
Sbjct: 354 VNDVMGFWAGDEVLKHLANFLTKKL-PDPIIARIGTDEFGIIVKG--GKKEIYHALDILE 410

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K     + +  +++ V+ S+G A +   +     +   AE A+  AK +GG  +E    +
Sbjct: 411 KFNEQYVKVDGKKLYVSISMGVAFYPEDRRKKESLFLLAEKALKEAKRKGGKQIEFANKN 470

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 D + ++ +L  AV   E  L Y PII + +  + G EAL++W+  K G +  + 
Sbjct: 471 ITFLPKDYLDLERELKEAVSKKEYLLYYQPIIDIRNGRVWGAEALLRWNSKKRGLVPPNV 530

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ I EE  +I  +   +LE I +    + +      I   +N++   LL+  + + +  
Sbjct: 531 FISILEESALINEVGELILEDICKTAKEFEEH--DLRIAFSMNLSVTQLLNRNMAQEIIM 588

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +      P ++ +  +ESV+M N +R +  L  L + GI + +DDFGT  S LSYL ++
Sbjct: 589 AVEHHEVKPQQLIVEITESVLMENVDRLKSQLEELHENGIQIEIDDFGTGYSSLSYLKHL 648

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+  AI+ +II MAK ++   IA+ +  +  +  LT +G DY
Sbjct: 649 PITNLKIDMEFIRSMPSDEEDRAIVGAIISMAKALQKGTIAEGVEQKEQLDILTNLGVDY 708

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ  + A P+    + + L  
Sbjct: 709 IQGYYFAKPMPKEELKQFLDR 729


>gi|291008225|ref|ZP_06566198.1| diguanylate cyclase/phosphodiesterase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 697

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/573 (21%), Positives = 239/573 (41%), Gaps = 13/573 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A     + + +   R     + S   +    +        P +  I       + G  
Sbjct: 127 LRARDAAEEALRASEARSRAVFVSSALGIAIAGLDGTIDEVNPSMEQIFDGVGTQLVG-- 184

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 +  +   + RT           R Q + R    D    W  +    + ++ G+ 
Sbjct: 185 GTLFDLVDEDWLADLRTADAELAAGETERFQRDLRYTRPDGAHIWTQLSASLVRDARGEP 244

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              I +  DITE+    E     A  D LTG+ NR     RL + L+   T    R  + 
Sbjct: 245 GYQILLYEDITERHMLQEQFRRQATHDPLTGLANRTLLKTRLDSALE--QTYPGRRVGLC 302

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSL 628
             D+D +K +ND LG  +GDD+L ++  RI  +     +L AR+ G+ F ++      + 
Sbjct: 303 YFDLDGFKAVNDSLGHPIGDDLLRAIAHRIQTVTGQEGMLTARMGGDEFVVLTPDSQGTA 362

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              +    M   I  P+++   E+T +AS+G      +  +  E+L++A++ +Y AK  G
Sbjct: 363 GQLELVERMLAEITRPVHIGGHELTASASVGVVEREVAGTSPDELLRDADITLYRAKAAG 422

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +    F        R+   +   +  A++ ++L++ Y PI+ L    +VG++A ++WDH
Sbjct: 423 RDQWTLFDPERNADARMRFKLSAAMPAALQQNDLFVEYEPIVWLETGAVVGVDARLRWDH 482

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            + G +    F+ +AEE  MI  +  +MLER+    ++W  +         +N++ +   
Sbjct: 483 AELGELGEEIFVGLAEETGMIARLGSWMLERVCEHALAWVRRFGQAAPVAGVNLSERHFR 542

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D EL   +Q ++  +   P  + L   ES +  +       L  L ++G+   + DFG  
Sbjct: 543 DPELVGDLQRILRTSGLPPRHLALGVPESALFDHGGDPLDALEILAEMGVRPAIYDFGRD 602

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT------GSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
            +L+  L  +P + V+  G  +       G       ++ S++  A+ +   ++A+ ++ 
Sbjct: 603 HALVPRLRPLPLNAVQITGEYLDSFAEPGGPDPLDEHLVFSLVESARLLRLPVVARGVHT 662

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   K L R+G   +Q  +   P     I  ++
Sbjct: 663 DEQAKRLQRLGVRGVQGPYTGGPASAGEIAGMI 695


>gi|82544061|ref|YP_408008.1| cAMP phosphodiesterase [Shigella boydii Sb227]
 gi|81245472|gb|ABB66180.1| putative enzyme [Shigella boydii Sb227]
          Length = 807

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/526 (23%), Positives = 229/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +    I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSALIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R    LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNHDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             A+ + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|157160965|ref|YP_001458283.1| cAMP phosphodiesterase [Escherichia coli HS]
 gi|157066645|gb|ABV05900.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli HS]
          Length = 807

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPYQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|323964197|gb|EGB59681.1| EAL domain-containing protein [Escherichia coli M863]
          Length = 581

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/525 (23%), Positives = 228/525 (43%), Gaps = 38/525 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 80  NGMPIHWASSSHGTEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 124

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 125 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 182

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 183 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 237

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 238 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 294

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F        +  +     L  A+ N++L LVY P I     E+
Sbjct: 295 HNAMDYIRKNGGNGWQFFSPVMNEMVKERLILGAALKDAISNNQLKLVYQPQIFAETGEL 354

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 355 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 413

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 414 LSVNLSALHFRSNQLPNQVSDAMQVWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 473

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 474 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 533

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +A+ +  +   + L ++ C  IQ    + PL    I   +    P
Sbjct: 534 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 578


>gi|332186277|ref|ZP_08388022.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332013645|gb|EGI55705.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 548

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/446 (26%), Positives = 199/446 (44%), Gaps = 19/446 (4%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  G++ R +   +  + +++ ++      A  D LTG+ NR  F +RL T+L      
Sbjct: 109 RDEIGELARGLDTLSRASAERERIQRQVEYLAHHDPLTGLVNRVVFAERLATLLLAGQR- 167

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ ID+D +K +ND LG A GD +L+     +   +   D++AR+ G+ F I+ 
Sbjct: 168 ----IALLAIDLDGFKGVNDTLGHATGDKMLIRTAALLVAAVGAEDVVARIGGDEFAILH 223

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                    +     +    A    +      +  SIG A          E+   A++A+
Sbjct: 224 RLSAEEEDASALVDRIFTIAAADCAVP----AIRLSIGIALSQRHAQEGDELHACADIAL 279

Query: 682 YHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N    +   +   R  R  +  +L  A    ELYL + PI       I+G E
Sbjct: 280 YRAKADGRNRARLYDAAMDEERRQRRWLAHELRHAAPRGELYLAFQPIADCATRRIIGQE 339

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +W HP  G +S   F+ IAEE  +I  I   +L        SW  +       + IN
Sbjct: 340 ALARWTHPALGPVSPDIFISIAEENGLIAEIGQHLLVEALTVARSWSSE-----WMLAIN 394

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   L D  + + M A I+   + P+R+++  +E V++   E +   L  LR  G+ + 
Sbjct: 395 LSPVQLRDPVMAKQMLATIAARGFDPNRLEVEVTEGVLIDERETATANLRALRAAGVRIV 454

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917
           +DDFGT  + LS L   PFD +K + S + G      A  I+R+ I + +++   I+A+ 
Sbjct: 455 MDDFGTGYASLSSLQQFPFDKIKIDRSFVAGMNAHGPALSIVRASIGLGRSLNIPIVAEG 514

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASP 943
           +  E     L  +GC  IQ   +  P
Sbjct: 515 VETEQQYAALDALGCQQIQGYLIGRP 540


>gi|254974123|ref|ZP_05270595.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255313251|ref|ZP_05354834.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255515941|ref|ZP_05383617.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649033|ref|ZP_05395935.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260682223|ref|YP_003213508.1| putative signaling protein [Clostridium difficile CD196]
 gi|260685822|ref|YP_003216955.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208386|emb|CBA60902.1| putative signaling protein [Clostridium difficile CD196]
 gi|260211838|emb|CBE02244.1| putative signaling protein [Clostridium difficile R20291]
          Length = 1032

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/573 (21%), Positives = 247/573 (43%), Gaps = 36/573 (6%)

Query: 403  DGERQSLAVLGSGDIV---WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIH 457
                + LA      I+    D +++   +  +     I             +++    IH
Sbjct: 477  SKAYEKLAYNTYDIILSICIDTNLIT-PIYQSES--NIFSFPIKENLEKTFSYIKKHLIH 533

Query: 458  INDRDNF-----RTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNG--- 507
             +D   F        LDS    ++    L +E+R    D +++W +I +  +S+ N    
Sbjct: 534  PDDIILFDDNHLLKSLDSLNNSKQDDLELNFEYRRLGIDKKYYWALIYMLKISSKNKLGE 593

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                 +    +I    +  +        D LTG+ N +SF ++ + +L       +    
Sbjct: 594  KQTHILVAIKNIDYLMQLHKNQK-----DILTGLYNYESFCEQTSLML---KRYPDKSYA 645

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++++DIDK+K IND+ G+  GD  L+ +   I + +    I  R+  + F I   S ++ 
Sbjct: 646  IIMMDIDKFKVINDIYGVRGGDKALIYVAELIQKNIGSNGICCRMYADVFCIFYESYSDR 705

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +      ++ S+       + E  +    G      + I  +   + A  A    K +
Sbjct: 706  D-VHKLIYKIKNSLNR----KKFEYMLVPCFGVYKILDNNIPITNACEMAGYAHKKVKKQ 760

Query: 688  GGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              N+   +     +   +   ++ ++  A+EN + ++   P   L   +IVG EAL++W 
Sbjct: 761  SINNYIFYDDTIRNDALEEKQMEREMEYALENGQFHVYLQPKYNLNANKIVGAEALVRWV 820

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G I   +F+ + E+   I  +++++ E++   I  W D     P+ I +N++   L
Sbjct: 821  HPEKGIIPPIKFISLFEKNGFIIRLDMYVWEQVCSLIRKWID-LGEEPVPISVNVSRLHL 879

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             +    E + +LI+K     S ++L  +ES+ + N +    ++  LR  GI L +DDFG+
Sbjct: 880  HNPHFKEIVLSLINKYSIPKSFLELELTESLFIKNIKLFTKIIADLRMDGIVLNMDDFGS 939

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S L+ L  I  DT+K +       G T++   +LR  I MAK+++  ++A+ +  +  
Sbjct: 940  AYSSLNMLKNINIDTLKIDCGFFNEEGITDREKIVLRHTIAMAKDLDMDVVAEGVETKEQ 999

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + L  + C  IQ  +   P+      KLL ++
Sbjct: 1000 AEFLVSLDCVVIQGYYYCKPIPSADFEKLLYQK 1032



 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 519 ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +TE KK      +   ++ D LTG  NR  ++  +                V+ +DI+  
Sbjct: 274 LTEMKKRKVENKLNYMSYYDFLTGAYNRNKYIKYIDNF----QKGKFKSIGVVFVDINGL 329

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD  +VS    I +     + + R+ G+ F ++    +           
Sbjct: 330 KDINDNFGHANGDSAIVSACVIIKKYFHSYN-VYRIGGDEFIVLCEDIS-----KQLFEE 383

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   ++        E+  + ++G + W+   I   +++K A+  MY  K R       + 
Sbjct: 384 LVSWLSEEFK---DEMIYSVAVG-SIWSDDNIDIHKLIKVADERMYQDKKR------YYN 433

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +  R++ + +  DL  +  N           +   D  I G        + K    +  
Sbjct: 434 KNKLRNNEMEVISDLADSTNNILFKHKELVDKVYFDDLMIKGYSK----AYEKLAYNTYD 489

Query: 756 EFMLIAEELCMIKAI 770
             + I  +  +I  I
Sbjct: 490 IILSICIDTNLITPI 504


>gi|260221447|emb|CBA30019.1| hypothetical protein Csp_A15060 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 577

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 209/445 (46%), Gaps = 17/445 (3%)

Query: 519 ITEQKKSLEGILCN---AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           +T   ++ E I      AF D L+ +PNR  F+D     L  ++  + +   + ++DID 
Sbjct: 137 VTAALRAYEQIRKLDEMAFYDRLSCLPNRNKFIDISDERLANASLSNEM---MAILDIDD 193

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           + +IND LG   GD +L ++  R+   L    +LAR+  + FG++  +E          +
Sbjct: 194 FSEINDALGHQQGDRLLQAVADRLKLELGPDAVLARIGSDTFGLMGPAE------VVDPL 247

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +      P  + +  + VTA++G  S  S  +   + LK+A +A+  AK         F
Sbjct: 248 RVLALFRTPFLVQDDAMVVTATMGLTSLFSGGVCGRDALKDANIALKRAKKSRRGSFVFF 307

Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                    +RV + + L  AVE+  L++VY P I L+   ++G+EALI+W +     + 
Sbjct: 308 SAEMGSDIRERVRLLQSLRSAVESERLFIVYQPQIDLVSGAVIGMEALIRWRNEDGTFVP 367

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE   MI AI  ++L     +++  +       + + +N++       E  + 
Sbjct: 368 PDRFIPLAEASGMIVAIGDWVLRMACHELVRLQGLGLG-DVRMSVNVSQIQFRHPEFLDK 426

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + A +  T  SP+ ++L  +ESV M + E     L  +R++GIS+ +DDFGT  S LS L
Sbjct: 427 LNAALLDTRISPNCLELEITESVAMEDAEFMLETLHGVRQLGISIAIDDFGTGYSSLSQL 486

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K + + ++          I   +I + +N++  +IA+ I        L  +G
Sbjct: 487 RQLPIDRLKIDRAFVSELGGDVLGGHIASMVIELGRNLQLKVIAEGIETPEQASRLKDLG 546

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           C   Q    A P+    + + L+ R
Sbjct: 547 CHEGQGYLYAKPMTSPLLKEWLQAR 571


>gi|120611589|ref|YP_971267.1| diguanylate cyclase/phosphodiesterase / diguanylate cyclase
           [Acidovorax citrulli AAC00-1]
 gi|120590053|gb|ABM33493.1| diguanylate cyclase/phosphodiesterase / diguanylate cyclase
           [Acidovorax citrulli AAC00-1]
          Length = 743

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/433 (25%), Positives = 208/433 (48%), Gaps = 14/433 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D L  +PNR  F++++   +      D++   + +IDID +   NDV+G A GD +L
Sbjct: 314 AYYDPLVRLPNRAHFVEKVDDCVRRGGAQDHV---LALIDIDDFSAANDVMGHAFGDRLL 370

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            ++ RR+ + L    +LAR+  + FG++                + + +  P  +     
Sbjct: 371 EAVARRLADALPSGVLLARVGSDTFGVL------GEARQVALPQLLQCVRPPPVVDGVPQ 424

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKED 710
            V+ + G+    S     ++++K+A +A+  AK         +   +     DR M+  D
Sbjct: 425 KVSLTCGYVHLPSDAQKGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAMLLSD 484

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+++++L+LVY P + L    +VG+EAL++W  P    +S  +F+ IAE   +I  +
Sbjct: 485 LRAAIDDAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGLIAPL 544

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L    + + +   +   PP  I +N++   L D    + ++A ++ +    S+++L
Sbjct: 545 GQWVLSTACQTLCALAREGLAPP-RISVNVSVVQLQDPAFPDAVRAALAASGLRGSQLEL 603

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV +   +  +  L  LR  G+S+ +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 604 EITESVAVVPTQLLQSTLASLRADGVSIAIDDFGTGYSSLSYLERLPLDRIKIDRSFVRR 663

Query: 891 -STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  +   I   I+ +   +   ++A+ I        L RMGCD  Q  H+A P+    +
Sbjct: 664 PTGAQGARIAEMILRLGHQLGLRVMAEGIEDAATWDALLRMGCDEGQGYHIAVPMDLRQL 723

Query: 950 LKLLKERFPLVKN 962
              L  R P  + 
Sbjct: 724 RAWLAAR-PAAQR 735


>gi|315298582|gb|EFU57837.1| PAS domain S-box [Escherichia coli MS 16-3]
          Length = 807

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVISEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|218682321|ref|ZP_03529922.1| putative GGDEF sensory box family protein [Rhizobium etli CIAT 894]
          Length = 475

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 207/463 (44%), Gaps = 19/463 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K+               A  D LTG+ NR+SF   L   L       +
Sbjct: 7   NFVGLVRMTEELKQKRAEAEELNLVNSRNALHDQLTGLANRRSFFLSLEQRL---QKHPS 63

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + ++D+D +K +NDV G A GD VL    RR   LL    I++RL G+ FGII   
Sbjct: 64  RPPVIGILDLDGFKPVNDVFGHAAGDLVLKETARRFSALLGEEGIVSRLGGDEFGIIFPC 123

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+  ++  P  + +  + V  S G     + + T+ ++ + A+ A+Y 
Sbjct: 124 SMTRQAIADLGQALCAAVRDPFEIPDGSVRVFGSCGIVYPDAGQYTAEDLYEKADFALYQ 183

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L       EL L Y PI+ L    +VG EAL
Sbjct: 184 VKSKRSSGVEFFSGEHEKILTQRYLIELELQAGDFARELKLEYQPIVELKSGRVVGYEAL 243

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS + F+  AE   +I  +   +  +    +           + +  N++
Sbjct: 244 ARWDSARFGRISPAAFIPAAERTAVIGRMTRILFAKALEALAIIPRH-----LKLSFNLS 298

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    + A+I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 299 ARDICDHETSMALLAMITRSGIDPRRIEFEITETALLSDFDTADQVISMLRAAGISIALD 358

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K + + +           I RS+  + +N+    +A+ + 
Sbjct: 359 DFGTGYSSLSHIHRLGFDKLKIDKAFVMNFDRDARCMNITRSVASLCQNLGIASVAEGVE 418

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            E   + L  +G    Q  H + PL     +          + 
Sbjct: 419 SEGVAEGLKAIGVRLAQGYHFSRPLPLELAIDYAARCEARSRR 461


>gi|215486709|ref|YP_002329140.1| cAMP phosphodiesterase [Escherichia coli O127:H6 str. E2348/69]
 gi|312969207|ref|ZP_07783412.1| putative enzyme [Escherichia coli 2362-75]
 gi|215264781|emb|CAS09165.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli O127:H6
           str. E2348/69]
 gi|312286094|gb|EFR14009.1| putative enzyme [Escherichia coli 2362-75]
          Length = 799

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|331682957|ref|ZP_08383565.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli H299]
 gi|331079778|gb|EGI50968.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli H299]
          Length = 807

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGTPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWTDQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|315497114|ref|YP_004085918.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
 gi|315415126|gb|ADU11767.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
          Length = 670

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 201/442 (45%), Gaps = 13/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +   +     A  D LT +PNR+ F   L      +     L  +V V+D+D +K IN
Sbjct: 225 ETQALSDENFRIANLDALTELPNRRRFFHDLEKAFAEAQA-GRLALSVGVLDLDGFKPIN 283

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
           D  G A GD VL    RR+ +           + RL G+ FG+I+        +++    
Sbjct: 284 DTYGHATGDRVLSETARRLEKACLGFIDAKADIYRLGGDEFGLIVRDAACEEALSEVGRH 343

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   + +P ++      +  SIG A+W+ +  ++  + +NA+ A+Y+AK         F 
Sbjct: 344 LTDVVRLPFSIGSTHAHMACSIGMATWSKTIQSAEILFENADYALYYAKRNLRGQTVLFS 403

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    +  I+  L  A    EL  ++ PI+ L    ++  EAL +W  P+ G ++ 
Sbjct: 404 DKHAAEIRTQTQIERHLLSADLEHELIQLFQPIVDLKTGRVLSFEALARWYSPQLGLVAP 463

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I  +   +LE+  R++ +W ++       +  N+++ D+   E    +
Sbjct: 464 DVFIPVAERAGLIGGVTRVLLEKALREMRNWPEEIG-----LSFNLSAHDICAAEGVVRL 518

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A+++ +   P RI    +E+ +  +  ++R  +  L+ +G  L+LDDFGT  S LSY+ 
Sbjct: 519 VAIVNASGIDPRRIDFEITETAMAHDFVKARQSMQMLKTLGCHLSLDDFGTGYSSLSYVH 578

Query: 875 YIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K + S +T         ++RS+  +  ++    I + +     +  L  MGCD
Sbjct: 579 RLPLDRIKVDRSFVTDIENDCASKVVRSMTGLCSDMGLKSIIEGVETPEQLGRLREMGCD 638

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q    A P+  + I   L +
Sbjct: 639 MAQGYLFAKPMHPSMIAGYLAD 660


>gi|310826221|ref|YP_003958578.1| hypothetical protein ELI_0599 [Eubacterium limosum KIST612]
 gi|308737955|gb|ADO35615.1| hypothetical protein ELI_0599 [Eubacterium limosum KIST612]
          Length = 589

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/546 (20%), Positives = 229/546 (41%), Gaps = 27/546 (4%)

Query: 427 RVTTTPDIATILGLASGS---MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            V   P    I+G        ++    +     +  D  +    ++  V   +   +   
Sbjct: 41  VVEANPYYYEIIGYPKEEYETLYHNKCDLYFKNNPEDWASIVRAVEKAVDAGQTSYETLA 100

Query: 484 RVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITE-------QKKSLEGILCNAF 534
           R+     +  W+ + +   ++   NG  + Y  +  D+T+        ++S   +L  AF
Sbjct: 101 RMIHKSGRPMWIKL-VSVFTDETINGYPVAYT-VMTDMTDYIEQEQALQRSNAKLLELAF 158

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT  PNR  F       +  SA  D     ++  DI K+K IND+ GI +GD  L  
Sbjct: 159 VDPLTRGPNRTKFDMDAGGAILESAPGD---YVLVSADIRKFKLINDLFGIEMGDRTLRY 215

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   + + L+  + L R + + F ++L +  +  KI +    M   I       ER+  +
Sbjct: 216 VYEVLKQNLEEGEFLCRTAADNFCLLLHN-TDKRKIINRLSVMAHDINRFNEDQERKYFL 274

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-----SDRVMIKE 709
           + + G        +  ++ L  A +A+ + K    + + +F+  S            ++ 
Sbjct: 275 SLAFGIYPVLDPNLPLTQQLDRANVALKNVKDTNDSRLFAFQFYSDLDRLKLMREKDMEN 334

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+   E  +   P + L D+ I G EAL++W  P+ G I   EF+   E+   I  
Sbjct: 335 RMQDALNAGEFVVYLQPKLSLKDDTISGAEALVRWQDPERGLIPPDEFIPFFEKNRFIVE 394

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++L++ +++   +  W D+  + P+ I +N++   L   +  +  +A+       P  ++
Sbjct: 395 VDLYVFDQVCSLLRRWLDE-GITPVPISVNMSRAHLAKTDFLDAYEAIRKAYGVPPELLE 453

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E++V  NPE    ++ ++ + G   ++DDFG+  S L+ L  +  DT+K + +  T
Sbjct: 454 IELTETLVFTNPEALFQVIDQIHRRGYRCSMDDFGSGYSSLNLLKDLRMDTLKLDRAFFT 513

Query: 890 GSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      ++ S+I +A+ +  + +A+ +        L    CD +Q    + P+  
Sbjct: 514 SQNADNPRERDVVTSVIDLAEKLSMSTVAEGVETPAQTAFLKEARCDMVQGYVFSRPVPI 573

Query: 947 NSILKL 952
                L
Sbjct: 574 PDFEAL 579


>gi|218558404|ref|YP_002391317.1| cAMP phosphodiesterase [Escherichia coli S88]
 gi|218365173|emb|CAR02892.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli S88]
 gi|307627002|gb|ADN71306.1| cAMP phosphodiesterase [Escherichia coli UM146]
          Length = 799

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKVWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|88808821|ref|ZP_01124330.1| sensory box/GGDEF/EAL domain protein [Synechococcus sp. WH 7805]
 gi|88786763|gb|EAR17921.1| sensory box/GGDEF/EAL domain protein [Synechococcus sp. WH 7805]
          Length = 711

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/601 (21%), Positives = 261/601 (43%), Gaps = 36/601 (5%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-----QSLAVLGSGDIVWD 420
               +    LV I IL    +  + L     +  + ++  +       LA+  S D  W+
Sbjct: 103 FSLTSPTNNLVRINILALIAIFAYFLIKKQINSTLIAEKRKIASLGLHLALEASSDGWWE 162

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-----WLPYIHIN-DRDNFRTILDSFVGY 474
            +   ++   +  +  +L +     H  I       W+ Y   + D   F  + ++ + +
Sbjct: 163 INKSENKALVSKKLCNLLSIKHNDKHKTIVELNANWWINYFEQSYDLIKFLCLQNASITH 222

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  ++  E        + H + I+   +  +       + +  +++E+  +   I   A+
Sbjct: 223 KEVKILPE-----KGKKLHHISIKRVKILGNKYIKDTIVFMLTNVSEEVANRSRIEDMAY 277

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DNLT + NR SF   L   L         R +++++DID +K +ND+ G  +GD  L  
Sbjct: 278 TDNLTKLSNRVSFELELEK-LSAEKNRHQYRYSLLMLDIDNFKLLNDINGHIIGDQFLRE 336

Query: 595 LTRRIGELLKFPDILARLSGNRFGII--LISENNSLKIA---DFAIAMRKSIAMPINLLE 649
           ++ R+  +L+  D +AR+ G+ F II    + N+   +         +RK+I+ P  + +
Sbjct: 337 ISNRLRLILRPMDFIARIGGDEFVIIARFPNSNDEDIMRRSLAIGEKIRKAISKPFLVDD 396

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             +    SIG         +   +L NA+LA+Y AK +G N V  F+ S          +
Sbjct: 397 LALQYNCSIGICIDKDQSDSPLSILDNADLALYDAKDKGRNKVSFFKDSMKDVVSRRASL 456

Query: 708 KEDLCLAVENSELYLVYHPIIR-------LMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           KE +  A+    +Y+ Y PI             +IVG EAL + DH      S  + +  
Sbjct: 457 KEMISEALNKKTIYIHYQPIFDISLKKRGQQKLQIVGYEALFRCDHIN---ASPGQIIKT 513

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    I  +   +++ I  DI  +     +    I IN+++ ++L+    + +   +++
Sbjct: 514 AERTGQIDQVTEAVIDAIGNDIK-YNKIRLISTQKISINVSAVEILNPNFSKQLLDRLAQ 572

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +  +I +  +E+  + N E ++  +  LR   I + +DDFGT  + +  L  I FD 
Sbjct: 573 NNINNDQICIEVTETAFISNIELAKRNIALLRLENIQVAMDDFGTGYASIQTLRNIKFDQ 632

Query: 881 VKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S + G   +  +A+++S+I  A+ I   ++A+ I  E  +  L+ +GC   Q   
Sbjct: 633 IKIDQSYIQGPMNDINLALIKSLIWTARAINVDLVAEGIETEEQLNTLSSLGCTLGQGFF 692

Query: 940 V 940
           +
Sbjct: 693 L 693


>gi|332142728|ref|YP_004428466.1| response regulator/GGDEF/EAL domain protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|332142850|ref|YP_004428588.1| response regulator/GGDEF/EAL domain protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552750|gb|AEA99468.1| response regulator/GGDEF/EAL domain protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552872|gb|AEA99590.1| response regulator/GGDEF/EAL domain protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 741

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 203/439 (46%), Gaps = 14/439 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E       +   AF+D LT +PNR  F++    +LD          +V +ID++ +  +N
Sbjct: 313 ENVNLFHELRNAAFRDWLTRLPNRNEFIN----MLDKPHLFAGENCSVALIDVNHFSDVN 368

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VG+++L +++ R            R+  + FG+I   E    +       +   
Sbjct: 369 DGLGQEVGNELLRAISGRFQTSFDGLVKKGRIGADVFGLIGPDELVCPEA------INAI 422

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
                 + +  + V  ++GF    + +    E+LK   +A+  AK    ++ E +   + 
Sbjct: 423 FQSSFKVGDHTLPVNVTLGFCKLDNKRNIGIEILKRTNIALNRAKKNLTDNFEYYAKDIE 482

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              + R+ +   L       +L L + P I L++E++VG+E L++W     G IS + F+
Sbjct: 483 DQTTWRLDMIRRLRSDFAARKLELWFQPQIDLLNEKVVGMEGLLRWPDGDGGYISPAIFV 542

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  ++LE   R + + +++     + + +NI+     D    E ++  +
Sbjct: 543 PLAEYSGLIVDIGEWVLEESCRRLQALKEKNYGH-LRVAVNISIPQFRDRLFVEKVKHAL 601

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     PSR++L  +ESVVM  P+     L  L++ G+ + +DDFGT  S +SYL  +P 
Sbjct: 602 SNANCDPSRLELEITESVVMDEPQIVIDALRSLKEFGVKIAIDDFGTGFSSMSYLQQLPL 661

Query: 879 DTVKFNGSLMTGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + S +        A+L  +I+ +   +    IA+ +        + ++GCD  Q 
Sbjct: 662 DRLKVDRSFVKDIKPGASAVLAETIVTLGNKLGLLTIAEGVEKREQASYMIKLGCDEAQG 721

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+ F+++L  L+  
Sbjct: 722 YLYAKPMPFDALLAFLENH 740


>gi|170693301|ref|ZP_02884461.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170141831|gb|EDT09999.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 657

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/459 (23%), Positives = 220/459 (47%), Gaps = 14/459 (3%)

Query: 511 RYIGIANDI--TEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +    D+  +++K  +  +     A  D+LT +PNR+SF   L   L   A       
Sbjct: 199 GVVHTQRDLQASQEKTQRLSDENFRLASIDSLTDLPNRRSFFASL-RALSEQALATGGGF 257

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V +ID+D +K++ND+ G A GD VL  +  R+  L +     ARL G+ FG++  +  +
Sbjct: 258 NVGLIDLDGFKQVNDIYGHASGDLVLQEVGVRLLALAEPGIFFARLGGDEFGVLAQNRQS 317

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +  + +    +  +++ P  +      ++ +IG+A++  +  T +++ + A+ A+Y  K 
Sbjct: 318 NDALLELGQRICDALSQPYRVAGNIAELSGTIGWAAFPDAGNTVTQVFERADAALYVGKE 377

Query: 687 RGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                   F        R    + ++L  A   SEL+L + PI  ++    +GLEAL +W
Sbjct: 378 GRRGTAVIFSTEHETRIRRSSLVTQELRHAELESELFLEFQPISDVVTRRTIGLEALGRW 437

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            +P+ G +   EF+ IAE   +I  I   +L +   ++  W  +     +++  N+++ D
Sbjct: 438 HNPRLGAVKPEEFIRIAERTEIILRITEVLLHKALAEVPHWPAE-----LYLSFNLSAID 492

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +  +     +  ++S +   P R+    +E+ V  + E++R  L  +++ G  ++LDDFG
Sbjct: 493 ISTSARARRLIDIVSASGVPPHRVSFEITETAVTRDFEQARSALTMIKQAGCRVSLDDFG 552

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LSY+  +PFD++K + S MT       +  I++S++ + KN+    + + +    
Sbjct: 553 TGYSSLSYVHRLPFDSIKIDRSFMTDVDSNSASKKIVKSVLDLCKNLGLECVVEGLETSS 612

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             + +  +G   +Q    + P+   ++   L+  F   +
Sbjct: 613 QAEVVKALGARAVQGYLFSPPMRSGAVSGYLQSAFAQSQ 651


>gi|296532676|ref|ZP_06895371.1| GGDEF/EAL domain protein [Roseomonas cervicalis ATCC 49957]
 gi|296266998|gb|EFH12928.1| GGDEF/EAL domain protein [Roseomonas cervicalis ATCC 49957]
          Length = 530

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 194/436 (44%), Gaps = 18/436 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++ ++   I   +  D LT +PNR    DRL          D +   VM ID+D ++ +N
Sbjct: 98  QRLRAENDISWLSRHDPLTRLPNRAGLEDRLAQ-------PDPVSAGVMHIDLDGFRGVN 150

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G+ +GD +LV L  R+ +     D + R   + F ++    +    +        + 
Sbjct: 151 DLHGVQIGDALLVELAGRLRDAF-PQDWIGRTGADEFVLLAEGVSLP-VLQQRGARALRL 208

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           ++ P  L  R + V  S+G A+      T  E L  A  A+  AK    N +  F   + 
Sbjct: 209 LSRPAQLQGRRVEVGVSLGLAALPQHGATLREALACAGTALQEAKQESRNALRLFDPAMR 268

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             ++ R  +++ L  AVE+  +   Y P + L    IVG EAL +W       +    F+
Sbjct: 269 ERQTARARLEQALREAVESGAIRPHYQPQVDLASGHIVGFEALARWRQADGTAVPPDIFI 328

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE   +I  +   +L+R  +D   W       P+ + +N+++  L D  L + +   +
Sbjct: 329 AAAERTGLIHRLTEQLLQRACQDAAGWPA-----PVRLAVNLSALQLADPRLPQRIAEAV 383

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P R+++  +ES ++     ++ +L  LR  GI + LDDFGT  + LS L    F
Sbjct: 384 ALAGLPPQRLEIEITESALIREAALAQRILETLRGQGIRVALDDFGTGYASLSQLARFSF 443

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +    S E+ + I++S++ + + +   I A+ +      + L  +GC + Q
Sbjct: 444 DAIKIDRSFIRDCLSDERHMKIIKSVLGLGQGLGIHITAEGVELPAQAELLRSLGCQHGQ 503

Query: 937 DSHVASPLGFNSILKL 952
                + +      +L
Sbjct: 504 GYLFGAAMPAEQARRL 519


>gi|222033232|emb|CAP75972.1| Heme-regulated cyclic AMP phosphodiesterase [Escherichia coli LF82]
 gi|312946068|gb|ADR26895.1| cAMP phosphodiesterase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 799

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRSGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|254229365|ref|ZP_04922781.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|151938056|gb|EDN56898.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
          Length = 533

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 211/441 (47%), Gaps = 11/441 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E    NA  D LTG+PNR+   + +   +           +V++ D+  +K+
Sbjct: 91  ILELHTVAEKEKRNAVHDALTGLPNRKYCFELIEDRI-----QSGDPFSVILFDVVNFKQ 145

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GD +L+ + +R+ E LK  D + R+ G+ F  IL S             + 
Sbjct: 146 VNDAMGHFCGDQLLIQIGQRLQEKLKGSDKIFRVGGDEFV-ILTSSACEETGKSLIEELD 204

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRV 697
            +++   +L E +++     G +++    +++  ++K+A++AMYHAK  G      +  +
Sbjct: 205 SALSNRFHLDEFQVSSRVVFGVSTYPYDALSNDLLIKHADIAMYHAKRNGNLFAFYNEDM 264

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     ++ I   +  A+E  E  L Y P+I       VG EA+I+W       IS ++F
Sbjct: 265 NVGAKYQLEISSRIQCALEKEEFQLYYQPLIDAHTNLAVGFEAVIRWHDENGKTISPNDF 324

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    +  I +++L ++ +D+ ++ ++     + + +N+++KDL  N L   ++ L
Sbjct: 325 IPIAERSNQVHNITMWVLNQVEKDLQTFIEK--DIKLPVHVNLSAKDLSSNLLFNRLETL 382

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         I L  +E++ +        L+ +++ +GI ++LDDFGT  S LS L  +P
Sbjct: 383 LKVNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLP 442

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S       TE   +I+ + I +A  +  +++A+ +     +  L   GCD I
Sbjct: 443 VDQIKIDRSFLCTASRTEGTRSIVENTIALAHGLGYSVVAEGVQDMDTLHFLRSRGCDII 502

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q       L  N ++  + E 
Sbjct: 503 QGYLFCPALPLNEVITWVNEH 523


>gi|229588621|ref|YP_002870740.1| putative signal transduction GGDEF domain-containing membrane
           protein [Pseudomonas fluorescens SBW25]
 gi|229360487|emb|CAY47344.1| putative signal transduction GGDEF domain membrane protein
           [Pseudomonas fluorescens SBW25]
          Length = 778

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/529 (24%), Positives = 230/529 (43%), Gaps = 24/529 (4%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI----- 499
           +  P+ + L      DR      L   +    G L    RV    N       RI     
Sbjct: 260 LQSPLDHALESFAPLDRQFLGIALAVLLVSLAGALFLARRVSRPLNALVQAAGRIGAGDY 319

Query: 500 -RPMS----NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             P+     +  G + R        +        +  NA  D LTG+PNR   ++RL + 
Sbjct: 320 RTPVRVRSHDEFGLLARAFNAMQ--SGIATRERQLAHNALHDPLTGLPNRALAMERLGSA 377

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +            ++ + I+ Y+ IN+  G    +++L   +R +   L   D  AR++G
Sbjct: 378 ISARR-----PVVLLYLGIENYRVINEGFGPQGVEEMLREASRCLSMSLLASDTAARIAG 432

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F ++L +     +    A  +   +  P  +   E+    SIG A++ +      E++
Sbjct: 433 SEFLLLLEN-TEVDRAVARADRLYALLTEPQRIGNDELRHEVSIGIAAYPADGQHVEELI 491

Query: 675 KNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
             A +A + A    G   +           ++ +  DL  AV   EL+L Y P + L   
Sbjct: 492 SRAAIARHDASSLPGHLQIYQQDRDLAHQRQITLIRDLRRAVIEGELFLCYQPKLDLKHG 551

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            +   EAL++W HP  G +S  EF+ +AE    + ++ L+++E   R I  W  +     
Sbjct: 552 HVRQAEALLRWQHPALGQVSPDEFIPLAERTGSMSSLTLWVIEEAIRQIAEWAQRG--ML 609

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I + +NI+  DL D+EL   + AL+ +      ++    +ES +M NP+++  +L +LR 
Sbjct: 610 IQLSVNISVDDLADDELAIRVTALLMQYQVGAEQLIFEITESAIMHNPQQALSVLEQLRG 669

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
            GISL++DDFGT  S L+ L  +P   +K + S +           I+RS I M+ N+  
Sbjct: 670 CGISLSVDDFGTGYSSLAQLQRLPVQELKIDQSFVRNLNSTSGDGVIVRSTIEMSHNLGL 729

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL-KERFPL 959
            ++A+ +  E  +K L    CD  Q   ++ PL   +  + + +ER P+
Sbjct: 730 KVVAEGVEFEPSLKLLKLWNCDTAQGYLISRPLNAMAFERWMRRERAPI 778


>gi|327254138|gb|EGE65767.1| putative enzyme [Escherichia coli STEC_7v]
          Length = 807

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/525 (23%), Positives = 228/525 (43%), Gaps = 38/525 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGTEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F        +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPVMNEMVKERLILGAALKDAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQVWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +A+ +  +   + L ++ C  IQ    + PL    I   +    P
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLP 804



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 10/146 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           I ++      S  +    + + L  AV      V   D  R  V        + G     
Sbjct: 124 IYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISE 183

Query: 445 MHGPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P
Sbjct: 184 ASGMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISP 238

Query: 502 MSNSNGDILRYIGIANDITEQKKSLE 527
           + +    +   +   +DITE+++  +
Sbjct: 239 VYDVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGKNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G I  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKI-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|91210725|ref|YP_540711.1| cAMP phosphodiesterase [Escherichia coli UTI89]
 gi|117623719|ref|YP_852632.1| cAMP phosphodiesterase [Escherichia coli APEC O1]
 gi|91072299|gb|ABE07180.1| hypothetical protein UTI89_C1702 [Escherichia coli UTI89]
 gi|115512843|gb|ABJ00918.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|294491763|gb|ADE90519.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           IHE3034]
 gi|315289775|gb|EFU49165.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323952639|gb|EGB48510.1| EAL domain-containing protein [Escherichia coli H252]
          Length = 807

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKVWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|85375075|ref|YP_459137.1| hypothetical protein ELI_11240 [Erythrobacter litoralis HTCC2594]
 gi|84788158|gb|ABC64340.1| hypothetical protein ELI_11240 [Erythrobacter litoralis HTCC2594]
          Length = 428

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 204/432 (47%), Gaps = 17/432 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR++    +      S         + ++D+D +K++ND  G A GD+++ ++
Sbjct: 3   DALTGLPNRRALHRDIA-----SRRGGEGEVALAIVDLDGFKQVNDHFGHATGDELIRAV 57

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I E         RLSG+ F ++         I   +  +   +  P+ L  R I V 
Sbjct: 58  AILITETCGDEAQCYRLSGDEFVLLADGPIAGNLIEGISRMIVDRLRKPVQLERRAIAVG 117

Query: 656 ASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           AS+G +         SSE+L+ A++AM+ +K  G      +       R  R+ +  +L 
Sbjct: 118 ASVGLSRSGGEEAPASSELLRRADVAMFASKRGGKMRCTWYAQALDRNREARLDLDNELR 177

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   E  + Y P++      IV +E+L++W+      I  + F+ +AEE  +I AI L
Sbjct: 178 AALAKGEFRVNYQPLVDARTGAIVAVESLLRWEREDGSQIGPNIFIPVAEESGLINAIGL 237

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    RD   W        + + +NI++  L + E    +  ++ +T + P R++L  
Sbjct: 238 WVLRTACRDARDW------GDLNLSVNISAAQLRNPEFPILVGQVLEETGFPPERLELEV 291

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+ ++ +P      L  +R+ G+S++LDDFGT  + + +L    F+ +K + SL+  + 
Sbjct: 292 TETCLVLDPVVVGRSLDVIRQFGVSISLDDFGTGYASIGFLRQFRFEKLKLDRSLVVDAQ 351

Query: 893 EKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           E     A++ S I +A+ ++  + A+ +  +     +   G D IQ       +    I+
Sbjct: 352 EDDGSRAMMISSISLARAMKMGVTAEGVETQCQADMVRAAGADQIQGWLYYRAMPPEQIV 411

Query: 951 KLLKERFPLVKN 962
             LK++F   ++
Sbjct: 412 A-LKDKFGSTRS 422


>gi|222149275|ref|YP_002550232.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221736259|gb|ACM37222.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 511

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 214/434 (49%), Gaps = 8/434 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E  +  A QD LTG+ NR+SF   LT     S    + R TV+++D+D++K IN
Sbjct: 66  ELVQERERAIALAQQDQLTGLANRRSFTAVLTDACQKSRLRGD-RVTVVLVDMDRFKAIN 124

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VL    RR+         +ARL G+ F +IL   ++      F  + R S
Sbjct: 125 DAYGHEAGDAVLREFARRLMVAAGPG-TVARLGGDEFALILDHLSDVTADHAFVSSFRAS 183

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  P+    + + V+ASIG+AS      +S+E+L++A++A+Y +K  G +   +F     
Sbjct: 184 LQEPVLFNGKRLEVSASIGYASLPDHAASSTELLRHADMALYVSKKAGLSLATAFDDDLW 243

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  ++R +++ +L LA++  E+   Y PI+    + I+G+E L +W HP  G +    F+
Sbjct: 244 AEANERRLLELELVLAMDRHEIMPWYQPIVDGASKRILGVEVLARWQHPYRGLVLPGVFL 303

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  ++  +   +                +   ++ +NI+        L   + +++
Sbjct: 304 PLAEERNLLDRLFAQVARAACAQTAPLVKAGKLN--YVSVNISPSQFKSGNLAMVIASIL 361

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T +  + + +  +E ++M +  R+   L  L ++G+ + LDDFGT  S +S L  +P 
Sbjct: 362 EQTGFPATALVVEITEDLIMSDLLRAGRELSELSRLGVRVALDDFGTGYSNISSLSSLPI 421

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + SL++   + R    I+++++ MA+ +   ++A+ I  E+  + L   GC   Q
Sbjct: 422 QWLKLDRSLISRVGDDRVGQVIVQAVLQMAQALGIDVVAEGIETEVQARWLVEAGCRKHQ 481

Query: 937 DSHVASPLGFNSIL 950
                 P     +L
Sbjct: 482 GFLYGRPAPLEDLL 495


>gi|262274048|ref|ZP_06051860.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
 gi|262221858|gb|EEY73171.1| sensory box/GGDEF family protein [Grimontia hollisae CIP 101886]
          Length = 717

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 211/442 (47%), Gaps = 11/442 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I ++++    +   A  D LT +PNR +    L  IL            +M + +DK ++
Sbjct: 274 INQRREIETQLQFTANHDPLTHLPNRFAMESYLNRIL-----TSEHDIVLMCVTLDKLRE 328

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND+    V D ++    +R   +L    +LAR S ++F +     +        A  +R
Sbjct: 329 INDMYSHLVADQLISESAKRFKTVLPPHAVLARTSHDQFMVACAGMSQLE-AEMHANQLR 387

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +     + + +I  T +IG A   S+ + +  ++++A+ A   A+  G   V ++  +
Sbjct: 388 MCLEEEFFIEDNDILTTCAIGIAYRYSNDLRAEHLIRHADTAANKARVLGNRKVVAYNQT 447

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  +  ++  +  A+ N EL L + P + L   +IVG+EAL++W+      IS   
Sbjct: 448 MQDQLNHKKDLERAIRKAINNDELELYFQPQVDLRTRQIVGVEALVRWESQNGAAISPGI 507

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            +  AEE  +++ +  ++++   R      D+   P   I IN++  +  D  L + +  
Sbjct: 508 IIKTAEETGLMQRLGHWVIDTALRHFSHMLDERCAPKC-IAINVSGHEFQDGYLADYVIR 566

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I+     P+R+++  +E V + N ER++ +L RL   GISL +DDFGT  S L+YL + 
Sbjct: 567 AINHYDIPPTRVQIELTEQVFIENLERNQHILNRLTASGISLAIDDFGTGYSSLAYLKHF 626

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P +TVK +   +     ++  + I ++++ MA  ++  ++A+ I      + L  +GC++
Sbjct: 627 PVNTVKIDRGFIKDLPRSKDDLVICQAVVSMANLLQLKVVAEGIETIDQQELLRNIGCNF 686

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q  +   P+    ++  LK++
Sbjct: 687 AQGHYYYPPMTAEQLMTELKKQ 708


>gi|163802221|ref|ZP_02196116.1| GGDEF family protein [Vibrio sp. AND4]
 gi|159174026|gb|EDP58836.1| GGDEF family protein [Vibrio sp. AND4]
          Length = 848

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 202/434 (46%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D LT + +RQ  ++ ++  L  S        ++ +I I+K++ I
Sbjct: 414 SNLKASFKALRDQLEFDPLTRLYSRQGLIE-ISKTLACSEQS-----SLYLIGINKFRDI 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +L+ +  R+ + L+    LAR+ G+ F + +   ++   +      +++
Sbjct: 468 NDSIGYHNGDQLLIHVAERLKQQLQDEATLARIGGDEFAVFMPDTHSDEDVRLTEQRLQQ 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +A P  L    + +  SIG      +    S  L+NA +A+  AK      V  +    
Sbjct: 528 LLAAPFMLDGETVVIKISIGVVR-KQTGQNMSIWLRNASIALSSAKQDSRTSVCHYSPEM 586

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  +   +   ++  E    Y PII L    I G EAL +W H K G IS  +F
Sbjct: 587 ASASKFRTQMLTKIQTGIDKHEFVPFYQPIIDLESGNICGAEALARW-HSKSGMISPLDF 645

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +   D     D    P    + +N++   L      E +  
Sbjct: 646 IPIAEENGMIKAIGQQILFQACSDTRKAIDSKQWPQDFQLHVNVSVHQLSSTNFVESVAK 705

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ KT  + S + L  +ES ++ +   +   L +LR++G+ + +DDFGT  S L+YL  +
Sbjct: 706 VLHKTGLAASNVTLEITESRIIDSAPTTLDNLLKLREMGLGIGIDDFGTGYSSLAYLHAL 765

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ +II + K ++  ++A+ +      + L  +GCD 
Sbjct: 766 PFTCLKIDRTFVNRLTKENLDSSVVAAIINITKGMKAKVVAEGVETAAQAQLLHSLGCDQ 825

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+    
Sbjct: 826 VQGFYYSRPMPMEE 839


>gi|170743856|ref|YP_001772511.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168198130|gb|ACA20077.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 841

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 209/435 (48%), Gaps = 8/435 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+   ++ +   A  D LTG+ NR++    L T+    A        +++ID+D +K++N
Sbjct: 401 ERANLMQTLRRQAETDGLTGLYNRRALTRDLATL---DARPAGGLAGLLLIDVDGFKRVN 457

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G AVGD +L  + +R+   +    ++AR+  + F ++L       +    A  +   
Sbjct: 458 DSFGHAVGDVLLRLVGQRLQGDVGGSGLVARIGADEFAVLLPDLAEPAEGERTADRILGG 517

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P  + E+   + ASIG A     +  + ++L  A++A++ AK  G +    FR    
Sbjct: 518 LAEPFRVAEQIFHLDASIGVAVAPHGQRGADDLLARADMALHEAKRAGQHCRRVFRPEMR 577

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           RS       ++++  A+   E  L Y P +RL D  I G EALI+W HP+ G ++ ++F+
Sbjct: 578 RSLLAWTACQQEMPRALAEGEFVLFYQPQLRLRDRTIAGAEALIRWRHPERGLLAPADFL 637

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E     + +  F+L     +   WR +     + + +N+ S+  L  +L E ++A +
Sbjct: 638 APLESSRAAEDVGRFVLRTACAEAAGWRRRGLGE-LRVAVNLFSRQFLSRDLVEEVRAAL 696

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++     S ++L  +E++++ + +     L  LR +G+ L  DD+GT  + LS L   P 
Sbjct: 697 AEAALPASALELEITETIILQHDDALIPPLRALRDMGVGLAFDDYGTGYASLSLLKRFPL 756

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S + G   + + +AI+RS++ + ++    + A+ I     ++ +T  GC   Q
Sbjct: 757 TRLKIDRSFVRGIPDSAQDLAIVRSVVALGRSFGLEVTAEGIETPAMLRCVTAEGCQEGQ 816

Query: 937 DSHVASPLGFNSILK 951
                 P+  +    
Sbjct: 817 GYLFGQPMAADLFAA 831


>gi|308048104|ref|YP_003911670.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ferrimonas balearica DSM 9799]
 gi|307630294|gb|ADN74596.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ferrimonas balearica DSM 9799]
          Length = 855

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 220/565 (38%), Gaps = 23/565 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
              FSQ +    ++ S  +    D V   D         P+   +L +  G         
Sbjct: 291 NELFSQRLHQR-QQISTLLRTVSDAVVLVDPQARIELVNPEAEKLLAVEHG--PVRQCAL 347

Query: 453 LPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDIL 510
           +  +     ++     L   +    GR+  E RV      Q   +        +  G  L
Sbjct: 348 VNLVAGPAGQE-LHAALKELLS--SGRISLEGRVSLQQGGQKRQLEYHAARTLDHEGHTL 404

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  DIT  ++    ++  + +D  TGI NR +F  RL  + DL          +  
Sbjct: 405 GAVLVLRDITHSEQMKRELMHKSQRDQTTGIYNRHTFEQRLEALADLPGQH-----AICY 459

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D++++K IND  G   GD +L  + + +   ++  D+LAR+ G+ FG+I+   +     
Sbjct: 460 MDLNRFKLINDSCGHEAGDRMLRDVAQEMVRSIRPGDLLARIGGDEFGLIMKDTSALETA 519

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 M +   + +        V  SIG A   + +    E+ K+AE+A +  K +GG 
Sbjct: 520 RVLKQLMERVEGITLYWDSGSYRVGISIGVAFQRADEQRPREVFKDAEIACHANKGKGGE 579

Query: 691 HVESFRVSSFRSDRVM-----IKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQW 744
               F  S  +              +  A+ N +L L Y PI  +         E L++ 
Sbjct: 580 SQIHFFDSLDQDLAHQRNAPQWAMKINEAIVNDDLVLFYQPIEPVQASSPRRKCEVLLRI 639

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  ++  +F+  AE   ++ A++  ++ +    +       N     + IN++   
Sbjct: 640 REEGGRILAPGQFIAAAERFNLMPAVDKAVIRKSFEWLARNSHLWNTQ--VLSINLSGTT 697

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +  L   +  + +     P  I    +E+  + N  R+  +L  LR+ G +  LDDFG
Sbjct: 698 LSNGNLVSYIDEMCALYRVPPETICFEVTETAAIANENRALEILHALRRRGFAFALDDFG 757

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  +   YL  +P D VK +G  +       K  AI++SI  + + +    +A+ +  + 
Sbjct: 758 SGFASYGYLRQLPVDYVKIDGCFVRNLANNAKDYAIVKSIHDVCRVMGIETVAEFVEDQE 817

Query: 923 DIKELTRMGCDYIQDSHVASPLGFN 947
            +  L  +G +Y Q   +  P    
Sbjct: 818 TLSRLRAIGVNYAQGYGIGRPKDLE 842


>gi|323942160|gb|EGB38334.1| EAL domain-containing protein [Escherichia coli E482]
          Length = 807

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLSNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|281178608|dbj|BAI54938.1| oxygen sensing protein [Escherichia coli SE15]
          Length = 799

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|320195562|gb|EFW70187.1| Heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           WV_060327]
          Length = 807

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|88859993|ref|ZP_01134632.1| putative GAF sensor protein [Pseudoalteromonas tunicata D2]
 gi|88817987|gb|EAR27803.1| putative GAF sensor protein [Pseudoalteromonas tunicata D2]
          Length = 692

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/573 (20%), Positives = 245/573 (42%), Gaps = 21/573 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q   +    ++ + S   +    +      +  +D     +    ++ T+          
Sbjct: 134 QRTQSLLSMTKNLKSSESKLRNVIDHIQQGLLTFDAKGLVLDYNTEVKTLF--------N 185

Query: 448 PIRNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                +  I       D      +    +  ++   + +   +  D  F   I +I    
Sbjct: 186 SPLIDITEILPELNLRDLSMDDALTQLGLNNQQTWFELKHCQQLTDRHFEICICKI---- 241

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
               D L Y+    DIT  KK  + +   A  D LTGI NR    DR+   L  S    +
Sbjct: 242 -DQADKLFYLAQLRDITALKKQQQHLSEVARIDPLTGIANRLVLDDRIAQALARSQRTGH 300

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   ++++D+D++K+IND LG   GD +L  L  R+ ++++  D +ARL G+ F II   
Sbjct: 301 L-MAMVLLDLDEFKQINDSLGHQAGDKLLKILANRLTKVVRKTDTVARLGGDEFCIIFEK 359

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            ++  +  D    +   +     L    I   ASIG        I   E+ K A+ AMY 
Sbjct: 360 IDSQEQCRDMLKKLIIQVEKSTLLSGHAINPKASIGACICRGD-IDKQELYKRADAAMYQ 418

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           AK      ++ ++ +  +  +  ++  L   ++ +EL L + P +   D+E+V +EAL++
Sbjct: 419 AKKMTRGSIKIYQHNEEQKRQSTLQIQLEKGLDYTELELYFQPSLSTNDQELVSIEALLR 478

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIAS 802
           W       +   +F+ + E+      I  +++    R   SW + +     + + +NI+ 
Sbjct: 479 WRF-NGKAMLPKQFISLMEQDGCFTQIERWVIHEACRQRKSWLQKELIEDSVTLAVNISQ 537

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                  L + ++  +++   +PS ++L   E+ ++ + +R+  ++  L+++G+ + +D+
Sbjct: 538 SFFYHPSLIKMLKNELNRFDLAPSMLELDIKEATLLLSSKRAAKIMSDLKELGVKIAIDN 597

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           FG   S L+ L + P D +K +  L   +  + + ++  II  A++++  ++A+ I  + 
Sbjct: 598 FGLGMSSLAILHHHPIDRIKLDKQLFHNNATESLPLIVGIIEAARSLKIDVLAEGIENQT 657

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            ++ L    CD  Q   +A P         LK 
Sbjct: 658 MLEYLQEYKCDAYQGYVIAKPSRSEVFESFLKN 690


>gi|331657492|ref|ZP_08358454.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli TA206]
 gi|331055740|gb|EGI27749.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli TA206]
          Length = 557

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 56  NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 100

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 101 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 158

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 159 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 213

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 214 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 270

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 271 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 330

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 331 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 389

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 390 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 449

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 450 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 509

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 510 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 555


>gi|289548674|ref|YP_003473662.1| diguanylate cyclase/phosphodiesterase [Thermocrinis albus DSM
           14484]
 gi|289182291|gb|ADC89535.1| diguanylate cyclase/phosphodiesterase [Thermocrinis albus DSM
           14484]
          Length = 844

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 187/449 (41%), Gaps = 15/449 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  IG    I    +  + I   A +D LT + N++ F + L+  +D +      +  +
Sbjct: 404 LLNVIGSVKAI---HRFTKEIEYYATRDPLTELYNQRVFWELLSYEVDRARRHQ-YKFAL 459

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +V+D+D +K IND  G   GD  L  +   +   L+  DI+AR  G+ F  IL    +  
Sbjct: 460 LVVDVDNFKVINDSYGHTFGDMFLRHVAALLLSSLRREDIVARYGGDEFVAILPY-TDET 518

Query: 629 KIADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                A+ +  +           R +  TASIG A +         +   A+  MY  K 
Sbjct: 519 GAYTAALRILDAFEREGMTAPDGRTVRATASIGVAVFPDHGEDPRHLFSVADEMMYKVKR 578

Query: 687 RGGNHVESFRVSSFRSDRVMIKED---LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G + V    V         +      +  AVE   +   + PI      ++V  E L +
Sbjct: 579 SGKHGVRIPSVEDLDEIAHELARKNVMVMSAVEEGRVIPYFQPIADCSTLKVVAYEVLAR 638

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            +      I + +F+ IAE L ++  ++L + E+  R +    D+     I +  NI+ K
Sbjct: 639 IEEKDGSVIPAGKFIDIAESLSLVFKLDLMVFEKACRVLF---DKFKNDDIKLFFNISPK 695

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+ +     M+ ++ +    P+RI    +E   + N E  +  +  L+  G    +DDF
Sbjct: 696 ALVLSNYLSDMKRILREIGLDPARIVFEITERETVRNLELLKKFVAELKMEGFQFAIDDF 755

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S  +Y+ + P D +K  G  +     +    A++ S + +A+ +    IA+ +   
Sbjct: 756 GSGFSSFAYVKHFPIDYIKVEGEFVRELKRSRVDYALVNSAVTLARILNIKTIAEFVESS 815

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +  L  +G D  Q  ++  PL    I+
Sbjct: 816 ETLDVLRAIGVDMAQGFYIGKPLRPEDII 844


>gi|257790236|ref|YP_003180842.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
 gi|257474133|gb|ACV54453.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
          Length = 1263

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/570 (22%), Positives = 239/570 (41%), Gaps = 46/570 (8%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGS-----MHGPIRNWL-----PYIHINDRD 462
            S D +++ ++  D          IL    G      + G I +         IH  DRD
Sbjct: 120 SSYDELFELNLTDD-------AYKILYHEPGKFTTPPLEGRISDMFPDVRDRMIHPEDRD 172

Query: 463 NFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            F    D       +    G L+ EFR       + W  + + P+          +    
Sbjct: 173 RFHAFWDFDTLLDRIEQAGGALRGEFRKHLESGAWSWTSLTVAPVKRGGSGERVVMCFIA 232

Query: 518 DITEQKK------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           DI E+ +          I     ++ LTG+ N  +F D+   ++       ++      I
Sbjct: 233 DIEEEMQRRTDQAERSQIQLLREREQLTGLYNAATFYDKAEHLVAD---MPDIAYDAAYI 289

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILI-SENNSLK 629
           DI+ +K  N+  G   GD +L ++  RIGE+ +    +A  L G+ F ++L     +  +
Sbjct: 290 DIEHFKIYNEWHGREAGDAILRAIASRIGEIARKHGGIAGYLGGDDFTLLLPHGLIDEKR 349

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG- 688
           +        +    P +  +  I    + G  +  S  ++      +A +AM   K    
Sbjct: 350 VES------ELKKEPFDSED-TIGFQPAFGVCAIDSPDVSVVTACDHAMIAMNSVKGAYT 402

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                    ++        I  ++  A+ N E  L + P      E IVGLEAL++W HP
Sbjct: 403 KRIAWYEAEMTEEMETEAKILLEVKRALTNHEFVLHWQPQCNTRTERIVGLEALVRWQHP 462

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +    F+ + E    I +++L++ E   R I SW D+    PI + +NI+  DL  
Sbjct: 463 SRGIVMPGAFIPVLERNNFIASLDLYVWEEACRHIRSWIDRGG-VPIPVSVNISRADLYA 521

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++ E ++ L+S+       ++L  +ES    + E+    + RL+ +G ++ +DDFG+  
Sbjct: 522 IDVVEALEGLVSRYDLDHRLLELEITESAYAED-EKMADAVARLKGLGFTILMDDFGSGY 580

Query: 868 SLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L  I  D +K +   +     +++  +IL +I+ MA+ ++  IIA+    +  + 
Sbjct: 581 SSLNMLKDITVDILKIDMGFLARQDQSQRSESILEAIVSMARFMDLRIIAEGAETKEQVD 640

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L  +GCDY Q  +   P+   ++ +LL +
Sbjct: 641 FLQGIGCDYAQGYYFYRPMSTEALEQLLSQ 670



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 118/315 (37%), Gaps = 18/315 (5%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP---DIATILGLASGSMHGPIRNWL--P 454
              SD  R    + G+    W  ++       +          G++       +       
Sbjct: 954  TRSDDNRLLDILKGAAVDHWYINVNTKSFLNSADRRAWRYWAGISLDDWSSSMLEDRLGK 1013

Query: 455  YIHI-NDRDN------FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSN 506
            YI    D +       F  +L  F    R     E+R+   ++   WM +  R +    +
Sbjct: 1014 YIGPSQDAEAIENFLDFDDMLQRFADGERND-SLEYRL-GENDDERWMELSYRMVQLEED 1071

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            G +  Y+ +  DI E+K+    +   A  D LTG+ NRQS   R+   L+ +      R 
Sbjct: 1072 GYVYAYLSV-TDIDERKRRELDLEDKAEHDALTGLLNRQSASVRMANALERTLQR-GYRG 1129

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
               +ID+D +K++ND  G   GD VL  + + +    +  D++ R  G++F  +   +  
Sbjct: 1130 AFAIIDLDDFKQVNDRYGHLSGDTVLADVAQHLCGAFRKGDLICRWGGDKFV-VYCEDME 1188

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               I    + + +          R I ++ S G A      I    + + A+ A+Y AK 
Sbjct: 1189 RDDIERRLVELSEGPWNATLPDNRVIELSVSTGIAMVPQDGIAFKTVYERADRALYRAKS 1248

Query: 687  RGGNHVESFRVSSFR 701
            +G  H   F      
Sbjct: 1249 KGKAHFCFFEADKDS 1263



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 1/103 (0%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +    +   + G  S  +          +H +D    +++            +  FR   
Sbjct: 723 LQVNNEYYHVTGCNSIDLRERQNRISRQVHPDDLPLVQSMFAEAYERPVTGAEATFRRYR 782

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            + +  WM +R   +       + +     D+TEQK+  + + 
Sbjct: 783 LNGEIMWMRMRAFFLRREQDRTIFF-ASLADVTEQKQQEDELR 824



 Score = 42.6 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 94/297 (31%), Gaps = 39/297 (13%)

Query: 376  VLIVILIGFTVIQHVLATGYFSQGIFS-DGERQSLAVLGSGDIVWDWDIVRDRVTT---- 430
            +    L   T  +        SQ +   + E     +  S   VW +DI  DR++     
Sbjct: 805  IFFASLADVTEQKQQEDELRESQAVLELEDEVLHRIIQQSDLNVWVYDIASDRLSFQNLS 864

Query: 431  TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +  IA++L  ++                +D  N    L     + R   +   +V +   
Sbjct: 865  SNGIASLLAASADEEDTASLG-------DDVSNVLRRLSRETLWGRPASR-TIKVWSNTG 916

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIP------- 542
            +   + I    + ++NG   R IG   D + + +  L     N   D L G         
Sbjct: 917  EPLTLHIEREIVPDANGKPARVIGYLEDPLNDSRAKLTRSDDNRLLDILKGAAVDHWYIN 976

Query: 543  -NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK--INDVLGIAVGDDVLVSLTRRI 599
             N +SF   L +    +            I +D +    + D LG  +G          I
Sbjct: 977  VNTKSF---LNSADRRAWRYWAG------ISLDDWSSSMLEDRLGKYIGPS---QDAEAI 1024

Query: 600  GELLKFPDILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               L F D+L R +       L     EN+  +  + +  M +            +T
Sbjct: 1025 ENFLDFDDMLQRFADGERNDSLEYRLGENDDERWMELSYRMVQLEEDGYVYAYLSVT 1081


>gi|297585356|ref|YP_003701136.1| MHYT sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297143813|gb|ADI00571.1| diguanylate cyclase/phosphodiesterase with MHYT sensor [Bacillus
           selenitireducens MLS10]
          Length = 664

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 223/451 (49%), Gaps = 17/451 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  +     I ++K         A+ D +TG+PNR +    +        TD     +V
Sbjct: 225 LIFIVSWGTMIFDRKVLSR----MAYYDGVTGLPNRNAMNRYMN-------TDGQENLSV 273

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  D+D +K +ND LG   GD +L  + R +         + R+ G+ F   + +  +  
Sbjct: 274 LFFDLDAFKTVNDTLGHHQGDRLLHHVGRILRPFTDADIRVFRIGGDEFLFTIKN-RSRG 332

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +  + A  +   +  P  + +REI VTASIG +          E L+ A++AMY AK  G
Sbjct: 333 ETLELADKLLFKLGHPYLIDQREIYVTASIGVSLSGEGASGGLEKLREADIAMYRAKESG 392

Query: 689 GNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N V+ +       R  R+ +++DL  AV+   LY+VY P    + + I+G EAL +W H
Sbjct: 393 KNTVKVYTKEMGEARMRRMTLEKDLTKAVKEERLYMVYQPKFDSLKQIIIGAEALTRWYH 452

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G I   EF+ IAEE  +I A   + ++   R   +W  Q     + + +N++ K + 
Sbjct: 453 PELGFIPPDEFIPIAEESDVIIAFTDWSIQAACRQTAAWSIQGLT--LPVAVNVSVKAIE 510

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              + E ++  I     +P+ I++  +ESV+    ++    + ++R++G+S+++DDFGT 
Sbjct: 511 LTNVKEMIERAIRVHKLNPALIEMEVTESVIHSEQDQILEQIKQIRELGVSVSMDDFGTG 570

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S +S L  +PFDT+K + S +    + K+ AI+  I  +A  ++  +I + +    D +
Sbjct: 571 YSSISVLNKLPFDTLKLDKSFIKDIHDGKKQAIIEGIFMIASKLDLAVITEGVETRDDER 630

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + ++G   +Q  + + P+    + +LLK +
Sbjct: 631 IIQKLGGHLMQGYYYSKPVAAEELTELLKRK 661


>gi|254459384|ref|ZP_05072805.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207083997|gb|EDZ61288.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 779

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 247/636 (38%), Gaps = 49/636 (7%)

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           + Y++A       I   +        +   ++   +   L    ++IVI +    +    
Sbjct: 170 QKYDKAYDYKIGDIRGILSIKVPTFHVDNIINRQFLGSVLYDLGLMIVISLIAFYLVRFF 229

Query: 392 ATGYFSQGIFSDG------------ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +          D             E    A+  S  IV   D+  +      +   I G
Sbjct: 230 SKLQAKLETELDERTHELKNSLSFLESYKDAID-SNLIVSKTDLNGNITYVNDNFCKITG 288

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMII 497
            +   + G   N L      D+   + +          R   Q   R    D   +W+  
Sbjct: 289 YSREDVIGENHNILR-----DKSFSKAMYTKLWSTIVSRETWQGRIRNVKKDGSTYWVDA 343

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            I P+ N+ GDI  YI I +DIT+       +   A  D+LT + NR +  + +      
Sbjct: 344 TITPIINAKGDITEYISIRHDITQLIYQKNELKTFANTDSLTKLGNRNALKEEIDY---- 399

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT-RRIGEL-LKFPDILARLSGN 615
                     +++++ID + +IND  G  +GD +LV  + + +    L     L R+SG+
Sbjct: 400 -----GENIFLILVNIDSFSQINDFYGHELGDAILVEFSSKLLQSCSLYEELRLFRVSGD 454

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F I+ I       +       +   A    + +  + + A+I  +          ++L 
Sbjct: 455 EFAILTIDMPAHTVVQKAQSIAKFINAHVYEVKDETVELNATISISL-----EEKDQLLI 509

Query: 676 NAELAMYHAKHRGGN---HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            A++A+  A+    +   + ++  +     + ++  + +  A++N ++ L + PI+    
Sbjct: 510 TADMALKIARRDAKDLLVYDKAMNLDKEYENNMLWTKKIKEAIKNDKIVLFFQPIVDNAT 569

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            EI   E+LI+        I+   F+ IA++  + K +   ++++         +     
Sbjct: 570 GEINKYESLIRLIDSDDKVITPYFFLEIAKKAKLYKQLTKIVIQKSF-------ENFREN 622

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
                +NI+  D+LD E+   +  +++    S  R+     ES  + N +  +  +  ++
Sbjct: 623 DFEFSVNISIDDILDKEINAYILEMLNIYNIS-HRVIFEIVESESIENFDEIQRFIKSVK 681

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           ++G  + +DDFGT  S   YL  +  D +K +GS++      +    I   I+  AK + 
Sbjct: 682 ELGCRVAIDDFGTGYSNFEYLMRLEADFIKIDGSIIKEILDNKNSEIITTVIVDFAKKMG 741

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +IA+ +  E   +++  +G +  Q  + + P  F
Sbjct: 742 IQVIAEFVESEEIFQKVKELGIEKSQGYYFSEPKPF 777


>gi|329936833|ref|ZP_08286512.1| integral membrane phosphodiesterase [Streptomyces griseoaurantiacus
            M045]
 gi|329303758|gb|EGG47642.1| integral membrane phosphodiesterase [Streptomyces griseoaurantiacus
            M045]
          Length = 1095

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 141/661 (21%), Positives = 261/661 (39%), Gaps = 46/661 (6%)

Query: 340  LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            L P           L+  +  R  + ++   L  G V++ +L    ++  +      +  
Sbjct: 371  LTPYLAAAVCTLGILYNLLDGRSVDRVVL--LTAGAVVLALLARQGIM--LRDNITLTHE 426

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
            +          V GS D++            +P  A + G  +  + G        IH  
Sbjct: 427  LAQKENHFRSLVQGSSDVIMIAAPSGILRYVSPAAAGVYGRPAEELVGT--ELAGLIHPE 484

Query: 460  D----RDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWMIIRIRPM------------ 502
            D        R  L +  +     R++  FR         W   R                
Sbjct: 485  DLGCVVHEVRRFLAASPLEEPTTRIECRFRSGGGGTSRSWGSPRSSEAGSGGGAESGGGW 544

Query: 503  SNSNGDILRYIGIA----NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
             N    + R+ G       D+TE+ +    +  NA  D LT +PNR  F  R+   L   
Sbjct: 545  LNVESTVSRHHGGLIFNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVQQALSGR 604

Query: 559  ATDDNLRP----TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
               D         V+ ID+D +K +ND +G   GD++LV   RR+ + L+  D  ARL G
Sbjct: 605  RASDRGPALRGTAVLFIDLDGFKAVNDTIGHQAGDELLVQAARRLQDSLRQGDTAARLGG 664

Query: 615  NRFGIILISENNSLKI------ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            + F  ++  +             + A  +R  ++ P  +   ++ V ASIG A +    +
Sbjct: 665  DEFAALITGDGTREHAARERHIEELADRLRVGLSQPYTIDGNDVRVAASIGVA-FAEPGL 723

Query: 669  TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHP 726
             + E+L+NA+LAMY AK  G N VE +     +       +   L  A+ + E  L++ P
Sbjct: 724  GAGELLRNADLAMYRAKAAGKNRVELYAPQMQQDVVRKAELAGRLRAAMHDGEFLLLHQP 783

Query: 727  IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            ++ L D  I  + A  +W   +    +  E++ + E       +   +LER         
Sbjct: 784  VVALADGRISSVAAQARWRSAQGVLFTPGEYVSVTEGSETAAGLCRDLLERAVTQAAE-- 841

Query: 787  DQANMPPIFILINIASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
              A+  P+ + + +A++ LLD  L    +++L+++   +   + L  +E       E   
Sbjct: 842  RTASGIPVPVTVRLAARRLLDRTLPPGSVESLLTRHGLASGALILELTEIDARVPLEELE 901

Query: 846  LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSII 903
              LG LR++G+ + LD  G+  + ++ L  +P D ++ + +L+ G  E      I   ++
Sbjct: 902  RRLGALRRLGVRIALDGVGSGQTTIAALRRLPVDILRLDRALVEGVVESARLHKITSGLL 961

Query: 904  PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVKN 962
             +A ++    +A  +     +  L  MGC + Q    + PL    + + L    +P+   
Sbjct: 962  RIATDLGLQTVADGVDLPEQVVTLRAMGCTHGQGLVFSGPLDEYRLRRALTRGHYPVPHG 1021

Query: 963  T 963
            T
Sbjct: 1022 T 1022


>gi|124514373|gb|EAY55886.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 874

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/442 (24%), Positives = 216/442 (48%), Gaps = 13/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  + +   A+ DN TG+ NR  FLDRL   LDL     +    V+V+ I++ + + 
Sbjct: 431 EAIEKQKQLDYLAYHDNATGLANRSLFLDRLRQSLDLPKAL-SPLTAVVVLSIERMQFVY 489

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI-AMRK 639
           D LG   G++++   + R+  L+   + + R+  N F I L    +  +I  F    +  
Sbjct: 490 DTLGRIAGEELIALYSARLSSLVLNVNRIGRIGDNLFAISLNIFPSVEEIVHFVQDRLLP 549

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VS 698
            ++ P  +  +E+ V   +G +        +  +L  A  A+ +A+  G  +    R ++
Sbjct: 550 HLSDPFVIGGQEVRVLTRMGISISPEDSRDAETLLSAATTALSNAQRDGETYRFYTRGMN 609

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++  L  A++N E  L Y P +RL +  I G+EALI+W  P  G +  S F+
Sbjct: 610 EMVRERLSLESHLLRALKNHEFVLFYQPKVRLSNGSIEGVEALIRWQDPDKGIVFPSRFI 669

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              EE  +I  +  +++++   D+  W  +    P  + +N++S  L   +  E +  L 
Sbjct: 670 PTLEETGLILPVGEWVVQQALSDLSGWIARGLSVP-RVSVNVSSIQLRHRDFLETLVRLW 728

Query: 819 ---SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +       +++  +ES+++ +   +   L  +R  G+++++DDFGT  S LSYL  
Sbjct: 729 GPEERAGL----LEIEITESLILDDVPGTIATLQEIRSQGMTVSIDDFGTGYSSLSYLAS 784

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P +T+K + S +   G   + ++I+ +II +A ++  +++A+ +  E  +  L+ +GCD
Sbjct: 785 LPVNTLKIDQSFVAQLGDRPESLSIVSAIISLAHSLNLSVVAEGVEKESQLSMLSELGCD 844

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            IQ   V+  L  +     L+ 
Sbjct: 845 AIQGFLVSEALPADRFEAFLQN 866


>gi|297581591|ref|ZP_06943514.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297534429|gb|EFH73267.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 849

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|90408159|ref|ZP_01216328.1| phosphoglycerate kinase [Psychromonas sp. CNPT3]
 gi|90310771|gb|EAS38887.1| phosphoglycerate kinase [Psychromonas sp. CNPT3]
          Length = 736

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 211/433 (48%), Gaps = 18/433 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNR---QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +K   + +      DNLT + +R   QSF  +L  +        +   T++ ID+D +K 
Sbjct: 314 EKSKFQALNYEVEHDNLTNLYSRKMVQSFTRKLKDL--------HQSFTLLYIDLDNFKA 365

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637
           IN  LG A GD +L+ +++R+   +      L R + + F +++ S  +  K+  +   +
Sbjct: 366 INKSLGHAYGDALLIEVSKRLESDIDNLSCTLCRYNADEFIVLIHSV-DLEKVTQYTQNL 424

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFR 696
              IA P  +    +++TASIG   + +     + ++  AE  M  AK         +  
Sbjct: 425 LLKIAQPYKIKHNTLSITASIGAVRYPNDCSDINNLVIYAEDCMSLAKKNKNDYQFFTAN 484

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +      +V I++ L  A++N+E+ LVY P +   D ++ G+EAL++W   + G I  S+
Sbjct: 485 IYKQFIKKVKIEQALRFALKNNEISLVYQPQLD-TDNKVQGVEALVRWHSKELGTIPPSD 543

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAEE  M+  +  ++++   ++I ++++  +     + IN++ +  + +   E +  
Sbjct: 544 FIPIAEENNMMPLLGTYIMQTAIKEISNFQN-IHNVAFSLSINVSVRQFMQSNFIETLLR 602

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                      I +  +ES+ + N +  + +  +L+   I L LDDFGT  S L+ L  I
Sbjct: 603 AYQPYRSDLLSITIEITESLFIENLDHLKGIFKQLKDQQIKLALDDFGTGYSSLNLLREI 662

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S +   +E  K  A+L SII MAKN+  +++A+ +     ++ L  + CD 
Sbjct: 663 PIDELKIDKSFVDNISESDKDQAMLNSIISMAKNLNLSVLAEGVETLEHVQILKNLHCDL 722

Query: 935 IQDSHVASPLGFN 947
            Q  + + PL   
Sbjct: 723 FQGYYFSKPLTLE 735


>gi|293400307|ref|ZP_06644453.1| putative sensory box/GGDEF/EAL domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306707|gb|EFE47950.1| putative sensory box/GGDEF/EAL domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 559

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/570 (19%), Positives = 234/570 (41%), Gaps = 29/570 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +    +    +F D       V  + D ++  D+  D    + ++     L    + G
Sbjct: 6   RDLFRQFHIDASLFYDA-----IVNSTDDYIYLVDMQSDISLISENMYLDFDLPGRLVKG 60

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +  W   I   DR  +   +   +         E+++R    +  W++ R     + +G
Sbjct: 61  LVPIWGDLIVDKDRKRYDESIARMLNGDTDEHNVEYQIRNRKGELIWIVCRGLLKRDQDG 120

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             L + G+             +      D++TG+  ++S +D L  +L+          +
Sbjct: 121 APLLFAGMIT----------RLENKGRIDHITGLLTQKSCIDHLAILLE-----SGKHGS 165

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M++ +D +  IN +     GD VL    + I  LL +   + R  G++F  I+  E + 
Sbjct: 166 MMLLGLDDFSHINTLQNHVFGDIVLRQFAQDIQSLLPYDAQIYRYDGDQFA-IVYDEADE 224

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            K  +    +      P          T S G      +     +++K A  A+  +K +
Sbjct: 225 KKTDELYQKLHAYSNHPHQSDAGSYYCTVSAGVVMIPENGNDYLDLIKYAVSALEASKQK 284

Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           G N    F       +  ++ I E+L      +    Y+VY P++     +I G EAL++
Sbjct: 285 GKNTCTFFNDDLIKQKLHQIAINEELHHNVLHQMRNFYVVYQPLLHTKTMKIQGSEALMR 344

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W   K+G+IS  EF+ + E   +I     ++LE+       W     +    + +N++  
Sbjct: 345 WKSEKFGDISPIEFIPVLESSGLIIQAGKWILEQAIATCKEW--SNLIKDFVMNVNVSYL 402

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            +L+++  E +++L++K   +P  I +  +ES  + +    R     LRK+ I + +DDF
Sbjct: 403 QILEDDFVETIRSLLAKYELAPEHIVIELTESYFVTDMGPIRECFSTLRKMHIRIAMDDF 462

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S L  L   P D VK + S +         ++ + ++I +  +I+  +  + +  +
Sbjct: 463 GSGYSSLGMLTQAPADIVKIDRSFINAIHTNPFNLSFINAVISLCHSIDIEVTVEGVEEK 522

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++  +  +  D IQ  +V+ P+   +  K
Sbjct: 523 NELDTVCTLQADTIQGFYVSKPISKAAFHK 552


>gi|297568323|ref|YP_003689667.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924238|gb|ADH85048.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 603

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 189/434 (43%), Gaps = 13/434 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++     +      D LTG+PNR      L   L  +  +      ++ +D+D +K +N
Sbjct: 156 ERRVMEARLKHRVGHDELTGLPNRSQLEGALELALIRAQ-NFQRSGALLYLDVDHFKLLN 214

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  +   +   +    +  R+ G+ F ++L +      +   A  +R+ 
Sbjct: 215 DTEGHESGDKLLTGVAGVLRRRVLPRHLAVRIGGDEFAVLLENTTT-EDVLKLAEELREL 273

Query: 641 IAMPINLLE--REITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           +              + ASIG A       + + E+L  A+ A + AK RG N V  +  
Sbjct: 274 LHE-YRFEGCLGCYNLGASIGVALMSPGESLQAGELLSRADQACHVAKRRGRNRVHCYDP 332

Query: 698 SSFRSDRV----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                  +         L  A+ N    L + PI+R  D      EALI+         S
Sbjct: 333 EDPEVVGLKRDATWVPMLRQALRNGSFALEFQPIVRARDGACCHYEALIRLL-ENGKMYS 391

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+  AE + +I  ++L+++E     + +        PI + IN+++  L +  L   
Sbjct: 392 PGEFIPSAERMGLIHQLDLWVVEAAVDRLAAMPLTEGQEPIRLSINLSAYALRNPVLMPL 451

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  +  T  SP R+    +E+  +   +++R L+ R+R +G    LDDFG+  S  +YL
Sbjct: 452 LERKLEMTGLSPRRLMFEITETTAVTQLKQARELVERMRSLGCRFALDDFGSGFSTFNYL 511

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P D +K +GS +           ++RS++ +A +++  +IA+ +  E   + L  +G
Sbjct: 512 KHFPVDMLKIDGSFVVNMLKNPTDELLVRSMVELAHSLDKQVIAEFVEDEATARRLREIG 571

Query: 932 CDYIQDSHVASPLG 945
            DY+Q  ++  P  
Sbjct: 572 VDYLQGFYLGRPQS 585


>gi|284990304|ref|YP_003408858.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284063549|gb|ADB74487.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 621

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/419 (28%), Positives = 207/419 (49%), Gaps = 12/419 (2%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
                 +D LTG+ NR   L+    +L           +V+++D+D +K +ND  G AVG
Sbjct: 182 NEQQGLRDPLTGLANRTLLLETTARMLAQRPD----PTSVLLLDLDDFKDVNDSRGHAVG 237

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L ++ RRI   ++  D +ARL G+ F +++    ++   A+    +  ++A P+ + 
Sbjct: 238 DQLLSTVGRRIQGCVRSVDQVARLGGDEFAVVVAG--SARIAAEVGERVLAALADPVVVD 295

Query: 649 EREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRV 705
            R + V  SIG A  TS    ++  +L+NA+LAMY AK  G N V  +   +      + 
Sbjct: 296 GRALHVRVSIGVADSTSVGDHSAGTLLRNADLAMYLAKSSGKNRVVVYAEGMERAAQTKA 355

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  DL  AV   +  + Y P + L +    G EAL++W HP  G +   EF+ +AEE  
Sbjct: 356 ELITDLDSAVAEGQFAVHYQPTVELSEGVTTGYEALLRWQHPTRGLVPPLEFIPLAEESG 415

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  ++L    R    W  QA   PI + +N++ + LLD+++   ++A +  +    
Sbjct: 416 AIVEIGRWVLTEATRQAAQWSRQAGR-PIDVAVNLSPRQLLDDDVAAAVRAALDASGLPA 474

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            ++ L  +E V++ + E     L  LR +G+ + +DDFGT  S LSYL  +P D VK + 
Sbjct: 475 GQLTLEVTEGVLIDDVEAVVDTLRALRLLGVRIAIDDFGTGYSSLSYLRRLPADVVKIDR 534

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           S +        +  ++ SII +A+++   ++A+ +  E     L R+ C + Q      
Sbjct: 535 SFVQDLGTGGRSTTLVASIIELARSLHLEVVAEGVETEEQHAVLGRLACSHAQGYLFGR 593


>gi|229521822|ref|ZP_04411240.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229341416|gb|EEO06420.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 849

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|170727287|ref|YP_001761313.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169812634|gb|ACA87218.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 778

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 205/429 (47%), Gaps = 13/429 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A+ D LT + N+          +  S  ++     + +IDI +  ++N  LG  V
Sbjct: 355 EIAFQAYHDPLTKLANKNEL-----KRVTSSWFNNKSAVAICLIDIKRMTEVNGTLGHVV 409

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+V+  + +R+       D++  ++G+ F +   +  +  ++      ++KSI      
Sbjct: 410 GDEVIKEIGKRLSSF-DNIDLVCHMTGDEFALAFKAI-SPKELRGLMSELQKSIEAEYRY 467

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVM 706
            E  + +  SIG + +         +L+ A+ A+ HAK       + + ++     +R+ 
Sbjct: 468 QEISLHLQLSIGIS-FVHYPSDLETLLRQADTALQHAKKNRLDQQIYTQQIDGNTLERLQ 526

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A++N EL L Y P + L  +++  +EAL++W HP  G I    F+ IAE++  
Sbjct: 527 LINELKSAIDNGELVLFYQPKLDLKLKKVTHVEALVRWQHPDRGMIPPDLFIPIAEQMGQ 586

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           + A+  +++       + W+ Q     + I INI++++L D   C+ +  L++       
Sbjct: 587 MNALTHWVINESLEQYLKWKSQ--DIELCIAINISAENLKDEGFCQYVLDLVTHKGVPID 644

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +E  V+ +PE +   L  L+K G+ L++DD+GT  S L+ L  +P D +K + S
Sbjct: 645 VLTLEITEDAVVSDPENAIKQLTVLKKSGLKLSIDDYGTGYSSLAQLKQLPVDELKIDKS 704

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      +    I+ S + +A N+  +++A+ I  E  +  L   GC+  Q  +++ PL
Sbjct: 705 FVQNLMVNQDDRIIVNSTLQLAHNLGLSVVAEGIEDEGALNWLIERGCELGQGFYLSRPL 764

Query: 945 GFNSILKLL 953
             + I   L
Sbjct: 765 DADKITDWL 773


>gi|153217389|ref|ZP_01951140.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124113595|gb|EAY32415.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 849

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|227082864|ref|YP_002811415.1| GGDEF/EAL family protein [Vibrio cholerae M66-2]
 gi|298500437|ref|ZP_07010241.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|227010752|gb|ACP06964.1| GGDEF/EAL family protein [Vibrio cholerae M66-2]
 gi|297540606|gb|EFH76663.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 849

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMSSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPTNLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|34496489|ref|NP_900704.1| hypothetical protein CV_1034 [Chromobacterium violaceum ATCC 12472]
 gi|34102343|gb|AAQ58709.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1318

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 208/430 (48%), Gaps = 9/430 (2%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +  +  E +   A+ D+LTG+ NR    +RL   +  SA +   R  + V DI+ +K IN
Sbjct: 872  DHIQKEERLDYLAYYDSLTGLANRSLLGERLAQRMADSAQEGR-RFALAVFDIENFKSIN 930

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD-FAIAMRK 639
            DV G   GD VL  LT+R+    +   +LAR+  ++F ++L       + A       R+
Sbjct: 931  DVFGRNEGDQVLTLLTQRLLRHTQDASLLARIGADQFALVLPQAAGEDEAALGIEQMRRE 990

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
             +  P+ L   E+ ++A  G +       T+  +L+ AE A+  AK  G      +R   
Sbjct: 991  CLDSPLVLNGDELRLSAKFGLSMHPDDGSTAMGLLERAESAVKRAK-AGKEQFLFYRQEM 1049

Query: 700  FRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                   ++    L  A+E  +  L Y P        IVG EAL++W  P  G +  ++F
Sbjct: 1050 TDRAAAALEMGSRLRQALELQQFELHYQPKFAAEGHAIVGAEALLRWRCPGRGMVPPAQF 1109

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + + EEL +I  +  ++L + ARD  SWR      P  I +N++   L  ++  + + A+
Sbjct: 1110 VPMLEELGLISEVGDWVLRQAARDYQSWRAAGLPAP-RIAVNVSPLQLRRSDFAQSLAAV 1168

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++        I +  +ES +M + + S   L ++R++G+S+ LDDFGT  S L+YL  +P
Sbjct: 1169 LALHPQHAG-IDIEITESQIMADVDSSIATLRQVRELGVSIALDDFGTGHSSLAYLARLP 1227

Query: 878  FDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
               +K + S ++   ++  A+  +  I+ +A ++    +A+ +  E   + L  +GCD +
Sbjct: 1228 VQALKIDRSFVSRMLDEEEAMTLVGMIVSLAHSMGLETVAEGVETEPQARVLAELGCDTL 1287

Query: 936  QDSHVASPLG 945
            Q   +  P+ 
Sbjct: 1288 QGFWLGRPMP 1297



 Score = 55.7 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 56/203 (27%), Gaps = 24/203 (11%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V+  V         +     R +  V  + D +   D  +           + G  +  
Sbjct: 389 GVVLDVTERHRAQMALRESEARLAGMVSSAMDGIITLDADQRITLFNAAAERMFGRRAQD 448

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY----EFRVRAADNQFHWMIIRIR 500
           M G   +    +    R   R  +  F              + +   A      +   I 
Sbjct: 449 MLGQPLD--CLLPPTMRAAHRQKVQRFGESGASPRHMGRLGKVQGMRAGGGIFDLEASIA 506

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGI-----LCNAFQDNLTGIPNRQSF----LDRL 551
              + +G     + I  DI+E++++   +        A  D      NR        +++
Sbjct: 507 TQ-DVDGRRSYTV-ILRDISERERTQAEMTQRMQQLEALND-----LNRAILAASDAEQI 559

Query: 552 TTILDLSATDDNLR--PTVMVID 572
             I   S          T M+ID
Sbjct: 560 AQIGLRSLRRQVPFWGATAMLID 582


>gi|153828365|ref|ZP_01981032.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148876195|gb|EDL74330.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 849

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|114797316|ref|YP_760193.1| GGDEF/EAL domain-containing protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737490|gb|ABI75615.1| GGDEF/EAL domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 656

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 219/435 (50%), Gaps = 11/435 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++  +     AF D L+G+PNR++ L RL   L  S      R  V+ ID+D +K +N
Sbjct: 217 DTQQLSDENRRIAFTDPLSGLPNRRAMLARLE-ALSASGPCGPDRLAVVFIDLDGFKVVN 275

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G A GD ++  +   +  L+    +L R+ G+ F  +L   + + +     +     
Sbjct: 276 DLHGHAFGDKLVTQVGAALKSLISDETLLVRMGGDEFAALLAGPDAAARAERLGVQALNC 335

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           + +P+ +  R++ + ASIG A   +   T  E+L+ A+ AMY  K  G   +  F     
Sbjct: 336 LTLPLTVDGRQVRIGASIGIAVDAAGNATPLELLRQADAAMYDVKSHGKGGIRVFDPGLD 395

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           + R  R+ I+++L   +E  E  +VY P++   D  I G+EAL++W     G ++   F+
Sbjct: 396 AGRDWRLQIEKELAHGLEQEEFDVVYQPLVDAADFRISGVEALLRWPGRAAGPLAPDAFI 455

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I+A+ +++LE+  RD+ +       P + + +N++       +  + + A++
Sbjct: 456 EVAEGSGLIQALGMYVLEKACRDLHAL------PDLKLSVNVSPTQFSHPDFAKQVVAIL 509

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T +S  R++L  +E  ++ +PER+   +  L++ G++  LDDFGT  + L+YL    F
Sbjct: 510 RQTRFSARRLQLEITERHLIDHPERAHAAIAMLKRRGVTFALDDFGTGFTSLAYLQSYGF 569

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK N SL+        A  ++  I+ MA+ ++  ++A+ +  E   ++L    CD +Q
Sbjct: 570 GCVKINRSLIGRLETDPKAGYLISGIVMMARGLDIKVVAEGVETERLARKLQIARCDLLQ 629

Query: 937 DSHVASPLGFNSILK 951
             +   P   + +  
Sbjct: 630 GYYFGRPAAIDRLKA 644


>gi|255263121|ref|ZP_05342463.1| sensory box/ggdef family protein [Thalassiobium sp. R2A62]
 gi|255105456|gb|EET48130.1| sensory box/ggdef family protein [Thalassiobium sp. R2A62]
          Length = 664

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 215/450 (47%), Gaps = 18/450 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++       A  D LTG+PNRQ F + L   L   A       +++++D+D +K IND
Sbjct: 221 REQAERRADYLAHFDLLTGLPNRQKFQEHLDDQLAQIA-----PMSMLLLDLDDFKGIND 275

Query: 582 VLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G A GD VL     R+   +  +  + ARL G+ F +IL  + +   +  F     + 
Sbjct: 276 TYGHAAGDAVLRRFAERLSKRVTSYNGLAARLGGDEFAVILP-QTDPATLRRFCGEFVQD 334

Query: 641 IAMPINLLEREITVTASIGFA----SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  PI      +     +G A          +T+  +L+  ++A+Y AK  G    + + 
Sbjct: 335 MERPIRCDGLSLLGGFCLGLATSKAVSNGKNLTAECLLRATDIALYEAKEAGRGAYKFYD 394

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +    +DR  + + +  A++  E ++VY P I L   E+ G EALI+W+      +  
Sbjct: 395 ASMEKRTADRRALLDAIPKALDAKEFFVVYQPKINLETLEVYGFEALIRWNR-DGVVVPP 453

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  +IK ++L+++E   + ++ W    +  P+ + +N++    ++  + + +
Sbjct: 454 EEFIPLAEEHHLIKELDLYVMEHAVQQLVDWNR-GSSAPLSVSVNLSGLHFVNARIVDHV 512

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ +T   P  + L  +E+V++ +      +L +LR++G  ++LDDFGT  S L+YL 
Sbjct: 513 RRILKETNLPPHLLTLEITETVLLDDWTSVSNVLDQLRELGPKISLDDFGTGFSSLAYLR 572

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            I  D +K + S +T    +++   +L +++ +A+ +  TI+ + I  +     +   GC
Sbjct: 573 SIAADELKIDRSFVTELVQSQEARFVLDAVVDIARGLGMTIVVEGIETDAQADIVRDFGC 632

Query: 933 DYIQDSHVASPLGF-NSILKLLKERFPLVK 961
              Q      P     +    L  R  L +
Sbjct: 633 HNAQGFLFGGPKDATTTFDLYLSNRTKLDR 662


>gi|163792716|ref|ZP_02186693.1| Predicted signal transduction protein [alpha proteobacterium
           BAL199]
 gi|159182421|gb|EDP66930.1| Predicted signal transduction protein [alpha proteobacterium
           BAL199]
          Length = 790

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/675 (19%), Positives = 262/675 (38%), Gaps = 48/675 (7%)

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI---PAWILIFIWFIGLWMAIT 359
                 ++        V   +   +   +  +  A+L        +   I  IG  +   
Sbjct: 137 DYTAVHALVLEQFVKTVWAVSLLGLVLTVSIFVIALLTTARPLRRLASTIREIGGSLDPD 196

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
             +  D+I+     G V    L     + H       +Q    +       + GS   + 
Sbjct: 197 ALIAGDLIRRNDEIGQVARAFLSTVRDLAHRTQESEDAQTKLQN------ILDGSIQAIA 250

Query: 420 DWDIVRDRVTTTPDIATILGLA---------------SGSMHGPIRNWLPYIHINDRDNF 464
                   +      A + G A               +    G    ++  +  +D D  
Sbjct: 251 VHR-NFKLLFANEAAARMFGYADAAEMLDECDFRQTFANDPDGSPEGFIDLLKRDDLD-- 307

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
               ++ +  R        R+R  D       I  R +    G+         D+T + +
Sbjct: 308 ----EAHLLTRP-------RLRR-DGTRFLAEIAARKIRWK-GE-WAVQTALIDVTARIR 353

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A +D LT +PN+  FL++L+ +L  +      R  ++ I+I++    ND LG
Sbjct: 354 AEQELRDLATRDALTHLPNKALFLEQLSFVLRDARP---GRLGILFININRMTGFNDALG 410

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           +A GD++L  +  R+   L    ++A+  G++F +++ + ++   +   A      +   
Sbjct: 411 LAGGDELLRQIGERLRSQLTVRSVIAKFPGDKFAVLMHNIDDESDLIALAQRFDDLLQAR 470

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
            N+    +  T S G A W      + E+  +AE A  +A              ++   S
Sbjct: 471 FNIGGERVQATLSYGAAVWPFDGRNAEELTLSAERACVNANVRRAREVVFSDQSMNIEAS 530

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  I+  L  A+ N  L + Y P IR  D  +VG EALI+W +     IS +EF+ +AE
Sbjct: 531 RRYEIERRLAEALTNGTLEVHYQPKIRAGDGRLVGAEALIRWPNGDGSYISPAEFIPVAE 590

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  F++ ++  D      +  +  + + +N+++    ++++    +  +    
Sbjct: 591 STGQILDVGRFVIRQVCSDQERLARETGLM-VPVAVNVSAIQFQNDDMLRTARQALEAHR 649

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PS ++   +ES  M   +    +L  LR  GI + +DDFGT  S LS+L  +P D +K
Sbjct: 650 IPPSALQFEVTESATMDQIDEVIPMLAGLRTFGIQIAIDDFGTGYSSLSHLKRLPIDYLK 709

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S       +   +I  +I+ +   +   +IA+ +  E + + L R+G D  Q    A
Sbjct: 710 LDRSFTRDVLGDDGRSIASAIVGLGHALNLKVIAEGVETEEEAEVLRRLGYDEFQGYLFA 769

Query: 942 SPLGFNSILKLLKER 956
            P+        + ++
Sbjct: 770 RPIPITEYQAWILDQ 784


>gi|218288845|ref|ZP_03493096.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240934|gb|EED08111.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 785

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/434 (26%), Positives = 215/434 (49%), Gaps = 19/434 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LT +  R  FL  ++  +  ++        ++V+++D+++ +N  L  A GD +L S
Sbjct: 10  RDALTNLLGRGQFLFVVSQRMKDASRS-----AIIVVNLDRFRLVNAHLSFADGDAILRS 64

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
              RI   +    + +RLS + + + L  + +  K    A  +R ++A P  +   ++ V
Sbjct: 65  TALRIARRIPETAVASRLSADEYAVALFDD-DVAKADALAEQLRAAMAEPHAIGGMDVIV 123

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS---DRVMIKEDL 711
           TAS+G A   +  +++ E+L+ A+ AM  AK  G N V   R    +      ++++  L
Sbjct: 124 TASVGVAE-GAQGVSADELLRRADEAMRLAKRFGSNQVRRDRDIVAKQDGLPPLLVETML 182

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++N EL + Y P I     ++VG EAL +W HP+ G+I    F+ +AE   +I  I+
Sbjct: 183 RQALQNGELEIHYQPKIHTRSMQVVGAEALCRWTHPELGHIPPQAFIPVAESSDLILPID 242

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L  + +   SW  Q     + I +NI+ +  + +   + ++  +++T   P  I+L 
Sbjct: 243 EYVLRSVCQQGASWMKQGYR--VRISVNISGRQFMQDGFPKLVRECLAQTGMDPQLIELE 300

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E   M + ER+  +L  LRKIG+ + LDDFG   S L+YL   P  T+K + +   G 
Sbjct: 301 ITERTAMYDVERAVHVLQELRKIGVRIALDDFGVGYSSLNYLIQFPVHTLKIDRTFTAGI 360

Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG---- 945
                +  I+ +II +AK++  +++A+ +        L    CD IQ     +P+     
Sbjct: 361 QSAVNQTPIIGAIISLAKSLNLSVVAEGVETFQQFDFLRENRCDEIQGFLFGAPVPPTSF 420

Query: 946 -FNSILKLLKERFP 958
             ++ +  L+ R P
Sbjct: 421 QLSAFVAKLQPRAP 434


>gi|327485218|gb|AEA79625.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 843

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 411 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 464 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQNDLKSVATDILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 524 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 581

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 582 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 641

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 642 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 762 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPMTYQD 832


>gi|258512059|ref|YP_003185493.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478785|gb|ACV59104.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 785

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/434 (26%), Positives = 215/434 (49%), Gaps = 19/434 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LT +  R  FL  ++  +  ++        ++V+++D+++ +N  L  A GD +L S
Sbjct: 10  RDALTNLLGRGQFLFVVSQRMKDASRS-----AMIVVNLDRFRLVNAHLSFADGDAILRS 64

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
              RI   +    + +RLS + + + L  + +  ++   A  +R +IA P  +   ++ V
Sbjct: 65  TALRIARRIPETAVASRLSADEYAVALFDD-DVEQVDAVAEQLRAAIAEPHAMGGMDVIV 123

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVMIKEDL 711
           TAS+G A   +   ++ E+L+ A+ AM  AK  G N V   R           ++++  L
Sbjct: 124 TASVGVAE-GAKGASADELLRRADEAMRLAKQFGSNQVRRDRDLVAKRDGLPPLLVETML 182

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++N EL + Y P I     ++VG EAL +W HP+ G+I    F+ +AE   +I  I+
Sbjct: 183 RQALQNGELEIHYQPKIHTRSMQVVGAEALCRWTHPELGHIPPQAFIPVAESSDLILPID 242

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L  + +   SW  Q     + I +NI+ +  + +   + ++A +++T   P  I+L 
Sbjct: 243 EYVLRSVCQQGASWMKQGYR--VRISVNISGRQFMQDGFPKLVRACLAQTGMDPQLIELE 300

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E   M + ER+  +L  LRKIG+ + LDDFG   S L+YL   P  T+K + +   G 
Sbjct: 301 ITERTAMCDVERAVHVLQELRKIGVRIALDDFGVGYSSLNYLIQFPVHTLKIDRTFTAGI 360

Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG---- 945
                +  I+ +II +AK++  +++A+ +        L    CD IQ     +P+     
Sbjct: 361 QSAVNQTPIIGAIISLAKSLNLSVVAEGVETFQQFDFLRENRCDEIQGFLFGAPVPPTSF 420

Query: 946 -FNSILKLLKERFP 958
             ++ +  L+ R P
Sbjct: 421 QLSAFVAKLQPRAP 434


>gi|71281741|ref|YP_271022.1| GGDEF/EAL domain-containing protein [Colwellia psychrerythraea 34H]
 gi|71147481|gb|AAZ27954.1| GGDEF/EAL domain protein [Colwellia psychrerythraea 34H]
          Length = 672

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 218/440 (49%), Gaps = 10/440 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLT---TILDLSAT--DDNLRPTVMVIDIDKYKKI 579
           ++         D+LTG  NR+  + +L+     L  +     + ++  V +IDI ++K I
Sbjct: 235 AISRAQYLGKHDSLTGALNREQVMAKLSDKMQELTHANKINKNQMKLAVFLIDIKQFKFI 294

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G+ VGD +L  +  R+   +  P  + RLSG+ F  ++  E     +      + +
Sbjct: 295 NDTYGLKVGDFILGEIASRLNHSVFIPQAVGRLSGDSFMFVIEFEQ-ISHVDRAVNHIHE 353

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
            I       ++EIT+  S+G+  +      S ++L+ + LA++HA+     +      + 
Sbjct: 354 LIERCFRYEQQEITIQGSVGYCFYPDDADKSEDLLQKSNLALHHAETNNIPSVAFEEGMQ 413

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +     V++++ L  A+ N E  L Y P + L   ++ G+EAL++W HP+ G +S  +F+
Sbjct: 414 AQGRHLVLMEKQLRSAIANDEFVLYYQPQLNLFTNKLEGVEALVRWQHPEKGLLSPGDFL 473

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E L M    + ++L +  +    W        + I +NI + +  + +L   +Q L+
Sbjct: 474 TELETLGMHNEFDNYILVKACQASERWFKLY-QRRVAIAVNITAVEFQNEQLVTNIQMLL 532

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       I+L  +E+VVM +  R+   + +L+ +GI +++DDFGT  S L+YL  +P 
Sbjct: 533 HKYGIPSKYIELEITENVVMTDITRAMDSIVKLQSMGIKVSIDDFGTGYSSLAYLRDLPI 592

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +      +  + I++S++ ++  +   ++A+ +     +  L  +GCD +Q
Sbjct: 593 DKIKIDRSFINEVAINDSDLTIVKSMVDLSHGLGKRVLAEGVETIEQLNLLRHLGCDAVQ 652

Query: 937 DSHVASPLGFNSILKLLKER 956
              ++ PL  + +++ LK++
Sbjct: 653 GYFISKPLPESKLVRYLKKK 672


>gi|15642743|ref|NP_232376.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121586597|ref|ZP_01676382.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121726723|ref|ZP_01679948.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673341|ref|YP_001218237.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153817448|ref|ZP_01970115.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153821274|ref|ZP_01973941.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229507204|ref|ZP_04396709.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229509876|ref|ZP_04399357.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229516997|ref|ZP_04406443.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229606709|ref|YP_002877357.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254851287|ref|ZP_05240637.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|9657349|gb|AAF95889.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121549156|gb|EAX59189.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121630884|gb|EAX63266.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126512034|gb|EAZ74628.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126521206|gb|EAZ78429.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315224|gb|ABQ19763.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227014636|gb|ACP10846.1| GGDEF/EAL family protein [Vibrio cholerae O395]
 gi|229346060|gb|EEO11032.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229353350|gb|EEO18289.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229354709|gb|EEO19630.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229369364|gb|ACQ59787.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254846992|gb|EET25406.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
          Length = 849

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPTNLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|229513677|ref|ZP_04403141.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229349554|gb|EEO14510.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 849

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPTNLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|306813535|ref|ZP_07447723.1| cAMP phosphodiesterase [Escherichia coli NC101]
 gi|305853095|gb|EFM53536.1| cAMP phosphodiesterase [Escherichia coli NC101]
          Length = 799

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTSF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|254458165|ref|ZP_05071591.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207085001|gb|EDZ62287.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 804

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/785 (16%), Positives = 285/785 (36%), Gaps = 62/785 (7%)

Query: 192 RGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
            G+ +    +  +   IFYM  R   ++      W     +++       + +       
Sbjct: 41  SGLEVAGGVIAVVISIIFYMKYRKQSVLTH--FNWATTALLAMGI---IDIFHASVMPGK 95

Query: 252 IWRACSEIALSSSLIIFLFMYL-HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           ++     +A+    I F+ ++L           +I    I    ++  +S  +      +
Sbjct: 96  MFVWLHSVAVFFGGIFFISVWLKEIEVSKKTYNFIPIVFIVFSILISILSIVFSQYIPEM 155

Query: 311 AR--------------ITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
                           I      +    F+I +        +L     +L  I  I    
Sbjct: 156 INHDKTFTTTANILNVIGGIGFFIASIKFLIIYSKTQEIEDILFAGLSMLFGIAGILFVS 215

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS--------QGIFSDGERQS 408
           ++   +   +    L     +I     +T  Q  +     +        + + +      
Sbjct: 216 SVVWDIQWWLW-HVLRLSAYIIAFYFLYTEYQKEIEEVDSANINLINTTKELKNSISFFE 274

Query: 409 LAVLGSGDI--VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFR 465
                + +   V   D+  + +    +     G     + G   N +   H + D   F+
Sbjct: 275 SFQNVTNEGNLVSKSDLHGNIIYVNDNFCKTTGYTREEVIGKPHNIIR--HPDNDSSIFK 332

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + D+    +    +   + R  D  ++W+   I P+ +++G+I+ Y+ I +DITE    
Sbjct: 333 DLWDTIQEKKT--WKATVKNRTKDGGYYWVDTNISPILDNDGEIIEYVAIRHDITELINQ 390

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I  ++  D LTG+ NR   ++ +      S +          I+ID ++++ND  G 
Sbjct: 391 RDEIERSSQTDTLTGLGNRFKLINDIRDSKSTSLSLSL-------INIDNFREVNDFYGH 443

Query: 586 AVGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             GD V++    R+ +         L R+ G+ F ++   ++    I      + +  A 
Sbjct: 444 RFGDFVIIEFANRLSDYFFGIKNKSLYRIQGDEFAVLNYIDDRDTFIGKIYSIVDEISAK 503

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
              + + EI++  +   +     +   + +   A+++M  A+    N   + +S  +   
Sbjct: 504 DFMIQDEEISLQMTAVLSF----EDDKNTLFTTADMSMKIARRERKNLLIYNKSLTLDKE 559

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             + +   + L  A++   L   Y PI+    ++    E+LI+        IS   F+ I
Sbjct: 560 YENNLNWTKKLKNAIKEDRLVAFYQPIVNNHTQKWEKYESLIRMIDEDGKVISPYFFLDI 619

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A+       I   ++ +          +         +N+  +D++D+ L E +   + +
Sbjct: 620 AKRTKNYIEITKIVITQSFEVFKDSDAEF-------SVNLTIQDIMDDSLKEFLFQKLEE 672

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                +R+     ES  + N +     +  +++ G  + +DDFGT  S   YL  +  D 
Sbjct: 673 YKI-GNRVVFEIVESEGIDNFDTVLDFIREVKECGCKIAIDDFGTGYSNFEYLLQLKADY 731

Query: 881 VKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GS++          A++ +I+  AK +    IA+ +  E     +  MG DY Q  
Sbjct: 732 IKLDGSMIKNLDTDFDTRAVVSTIVDFAKKMNMKTIAEFVKDETIESIVKDMGIDYSQGF 791

Query: 939 HVASP 943
           + + P
Sbjct: 792 YFSEP 796


>gi|254285945|ref|ZP_04960907.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150424127|gb|EDN16066.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 849

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|153825523|ref|ZP_01978190.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|254225462|ref|ZP_04919073.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125622096|gb|EAZ50419.1| GGDEF family protein [Vibrio cholerae V51]
 gi|149740808|gb|EDM54899.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 849

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|255743707|ref|ZP_05417666.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262158597|ref|ZP_06029712.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262170010|ref|ZP_06037699.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|255738637|gb|EET94023.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262021418|gb|EEY40130.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262029758|gb|EEY48407.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 843

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 411 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 464 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 524 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 581

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 582 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 641

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 642 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESGLQPTNLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 762 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPMAYQD 832


>gi|110680389|ref|YP_683396.1| GGDEF/EAL domain-containing protein [Roseobacter denitrificans OCh
           114]
 gi|109456505|gb|ABG32710.1| GGDEF/EAL domain protein [Roseobacter denitrificans OCh 114]
          Length = 681

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 212/437 (48%), Gaps = 6/437 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + + ++  A  D LTG+ NR++  + L +    S    +    ++ +D+D +K++
Sbjct: 235 TELISARQELMRAANHDALTGLFNRRAVYEHL-SAPGPSTQGGDFTRCIIKMDLDLFKEV 293

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD VLV + R + ++ +  D + R+ G+ F I++ +  +   I D    +  
Sbjct: 294 NDSLGHHAGDRVLVHVARILKDVSRPGDFVGRIGGDEFVILIDNPKDLKMIQDLCQQIIS 353

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           ++  PI L   +  + ASIGF    SS  T  ++L  A+LA+Y AK  G +   ++    
Sbjct: 354 AVGKPITLDRVQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKRGGRSRACAYSNAL 413

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     R ++  ++  A+E  +    + P +     EI G E L +W HP+ G +  + F
Sbjct: 414 AEEIETRRILFNEINAALEGDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATF 473

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AEE  MI  I+  M+E+    +  +R+     P  I +N +   L D  L + +   
Sbjct: 474 IAAAEEAGMIHQIDQIMVEKGLDALEVFREMGVHVPA-ISVNASPPTLRDPHLTDRLLQA 532

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +      PS + +   ES ++ N +  + L +  L K G S+ LDDFGT  + +S L  +
Sbjct: 533 VRARHLPPSVLTVEVLESTLIENDDDMALLTIENLSKAGFSVVLDDFGTGYASMSNLSRL 592

Query: 877 PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + SL+      +  +I+ +++ ++ N+   ++A+ +      K + R+GCD +
Sbjct: 593 RLDGIKLDQSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAHFKTVRRLGCDVV 652

Query: 936 QDSHVASPLGFNSILKL 952
           Q   +  P+   + ++ 
Sbjct: 653 QGFGIGRPMPKEAFIQW 669


>gi|262191248|ref|ZP_06049445.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262032882|gb|EEY51423.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 843

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 411 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 464 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 524 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 581

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 582 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 641

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 642 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 762 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPMAYQD 832


>gi|192289279|ref|YP_001989884.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192283028|gb|ACE99408.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 605

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 123/553 (22%), Positives = 230/553 (41%), Gaps = 22/553 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D       V      V   D     +      A    LA  S               DR 
Sbjct: 37  DLRLFKEIVRALPSAVTVQDEQGRFIFINDAAAAQYRLAPSSTDAAGNL------PLDRR 90

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                  + +   +   + E R+         ++   +PM +  G  L  +  + D+TEQ
Sbjct: 91  RSEGA--ALLAQGQSGTREE-RI-TFGGATRALLTAHKPM-DIAGRKL-LLSSSLDVTEQ 144

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   + +   A+ D LTG+PNR      +T +L+           +  +D+D +K IND 
Sbjct: 145 KVIEDELFRRAYYDELTGLPNRAVIERHVTELLEDHRPH---HFALAFLDVDNFKHINDY 201

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G +VGD +LV + +R+   L+  D+L+R+SG+ F ++L    +  ++A+    + + + 
Sbjct: 202 YGHSVGDALLVGIAKRLSLELRDTDVLSRISGDEFLLLLDPITSEAEVAEHINFLLQRLK 261

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P  +   E+  +ASIG + +     +   + +NA++AMY  K  G      F   +   
Sbjct: 262 APFYIDGTEVFASASIGISLYPEHGRSYEALRQNADIAMYRVKSDGKGASAIFNIAMERE 321

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ +++ L  A+ +      + P + +   EI G+EAL++         +   F+ +
Sbjct: 322 ALERMAVEQSLRQAILDRRFCCAFQPKVDIRTNEIKGVEALVRLRDDNGVIQAPGTFVDL 381

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A EL +I  +   +L  I + I             I +N+A+K     +        ++ 
Sbjct: 382 AVELGLIDELTHLVLAEIMKSIDLINATFG-EDASISVNVAAKQAGSPDFMRSFCEALAA 440

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R  +  +E   +      + +L  LR+IG+ +++DDFG   S LS L  I  D 
Sbjct: 441 TEC-PKRFMVEITEDAFVAKAHFQKQILPMLREIGVGISIDDFGIGYSSLSALADITADE 499

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQD 937
           +K + S +T      +   ILR+I  ++  +  T+IA+ +    ++  L  M    Y Q 
Sbjct: 500 IKIDRSFITDIHKRPRSQGILRAIESLSDALGMTVIAEGLETFEELAYLQAMTRIRYAQG 559

Query: 938 SHVASPLGFNSIL 950
            + + P+    + 
Sbjct: 560 YYYSKPIFLEELR 572


>gi|153803486|ref|ZP_01958072.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124120973|gb|EAY39716.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 849

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPTNLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|120612405|ref|YP_972083.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
 gi|120590869|gb|ABM34309.1| diguanylate cyclase/phosphodiesterase [Acidovorax citrulli AAC00-1]
          Length = 1004

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 100/431 (23%), Positives = 204/431 (47%), Gaps = 13/431 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+ +R++ L++L +              V+ +DID++K +N   G  VGD+VL  
Sbjct: 565 RDALTGLMDRRNLLEQLASE-QSLVAGGAGPTGVICLDIDQFKLLNVAHGTQVGDEVLCE 623

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLE 649
             RR+  +L+  DILAR   + F ++L +E          +   A  +  S+A P N+ +
Sbjct: 624 TARRLKRVLRRGDILARTGSDEFVVVLRTEGRIDHDARHLVEGVAAKLLHSLAAPFNVGQ 683

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMI 707
             +++  S G +   +   +  + L+ A+LA+  +K +GGNH   F  +        + +
Sbjct: 684 GSLSIRTSAGISLIHADTASGLDALREAQLALRRSKTQGGNHPVFFEENMLAGFHERLAL 743

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL  A+ + +L++   P       ++ G EAL++W HP+ G +   +F+ +AE   +I
Sbjct: 744 EQDLHAAIGSEQLFMQVQPQHDARS-QLTGGEALLRWRHPERGMVPPDQFIALAEASGLI 802

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L+     +     +   P + + INI+          + ++  ++ T    S 
Sbjct: 803 IELGAWVLKTGCGILADLHRE--DPSLTLAINISPAQFKHPGFVDEVRHALATTGARASG 860

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E +++ +   +   L  L ++G+  ++DDFGT  S L+YL  +P   +K + S 
Sbjct: 861 LILEITEGLLITDVNHAAERLAELVELGVRFSIDDFGTGFSSLAYLRQLPLYEIKIDRSF 920

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G      +  I+ SI+ M  ++   ++A+ +  +     L    C   Q      P+ 
Sbjct: 921 INGLPGDTASVGIVCSILSMGSHLGLHVVAEGVETQEQSDFLQANRCPSQQGWLHGRPMP 980

Query: 946 FNSILKLLKER 956
             + L+ ++ R
Sbjct: 981 AETFLENVRAR 991



 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 135/390 (34%), Gaps = 18/390 (4%)

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
              +A IT+    +           +   + +  + A + + +      ++I  R   D 
Sbjct: 152 AQLVAAITVLLAGVLG--VFSMLARRMLSQPMHRLAAELAMIMPGTARRISINPRHAVDE 209

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +         L+ +         +       + I +   R       +   ++       
Sbjct: 210 VGIVTTAANRLLELQQDA-----LERERGMREEISALEARYRGIFDSTSAGIFILSSAGQ 264

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---F 483
            +  +P    +L L +G  +                     L   +   R  L+ E    
Sbjct: 265 LLHASPAFERLLDLQAGRGNEARAGDFASA----FFFSSAQLQRLIERARASLEPEAEDL 320

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            +   D    W+   +  M  ++       G+  DIT +K         A  D LTG+ +
Sbjct: 321 ELVRPDGTKVWVHCMVSCMETADAAEQYVEGVLYDITRRKNQESAARYRAEHDALTGLKS 380

Query: 544 RQSFLDRLTTIL-DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           R      L   +  +    D    T+M ID+D +K +ND  G A GD VLV   RR+  L
Sbjct: 381 RSYIETLLGQHIHAVHPGHDPGDVTLMFIDLDGFKSVNDRWGHAAGDAVLVEAARRLRML 440

Query: 603 LKFP-DILARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINL-LEREITVTASIG 659
            +   D + RL G+   +++   +     ++D A  +  S  +P  L       V AS+G
Sbjct: 441 FQRNCDAIGRLGGDELVVVIAGVDALHPSVSDLARQLIDSFKIPFVLPNGESARVGASVG 500

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            AS+ +   T   ++  A+ AMY  K  G 
Sbjct: 501 VASYPAHATTVKTLIHAADAAMYAVKQAGK 530


>gi|110641663|ref|YP_669393.1| cAMP phosphodiesterase [Escherichia coli 536]
 gi|191172834|ref|ZP_03034370.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli F11]
 gi|110343255|gb|ABG69492.1| hypothetical protein YddU (hypothetical sensor protein)
           [Escherichia coli 536]
 gi|190906840|gb|EDV66443.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli F11]
          Length = 799

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|332295269|ref|YP_004437192.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Thermodesulfobium narugense DSM 14796]
 gi|332178372|gb|AEE14061.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Thermodesulfobium narugense DSM 14796]
          Length = 847

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/577 (20%), Positives = 245/577 (42%), Gaps = 32/577 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSG---DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           F+       +   L +       + +   D   + +        I G     + G     
Sbjct: 286 FALEKIESEKWHKLILSAINKSFEFICILDENFNIIYANDRALEISGYLREEIIGK---- 341

Query: 453 LPYIH---INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              IH   +  +++ + ++   +    G        +  DN     ++ I P    +  I
Sbjct: 342 -NIIHFCYLESKEDIKRVIQEKLS-LEGNYSGIINYKLKDNSTKDFLVNIMPYFKKD-KI 398

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             YI +   + ++ + L+ +    + D +T +PN   F+  +      +  ++N    ++
Sbjct: 399 TNYIAVGKILEKEDELLKSLERALYFDPITNLPNNNYFIKEVEKFCQKAQ-NENQIGALI 457

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +I+   +KKIN+  G   G+ +L  +  R+ E+ +  D++ARL   +FG++         
Sbjct: 458 LINPIGFKKINEAFGFDTGNKMLSLIASRLKEITEKNDVVARLESEKFGVLFGPLRFKEY 517

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             + +  + + +  P N+    I++  ++     +     SSE+LK A +A+  AK +G 
Sbjct: 518 ALELSKKILEELTKPYNINNIHISLEFNLAIEFISKDANNSSEILKRAHIALSDAKRKGK 577

Query: 690 NHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N +  F+    +    ++ ++ +L  AV N E  + Y P +   D+ IVG+EAL++W   
Sbjct: 578 NQIGFFKKDIEQDTIRKLKLRSELEQAVSNKEFIIYYQPYVD-KDKNIVGMEALMRWKKG 636

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               +  SEF+   EE   I      +++ +  DI             + +N++ K L  
Sbjct: 637 NKILLP-SEFIEELEEGQYIVDAEDLIIDNVLDDISEL-----GLSFPVSVNLSIKSLFR 690

Query: 808 NELCEGMQALISKT--------LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            +L + + + +++           S + + +   E   + N E  R L+  LRK  +  +
Sbjct: 691 KDLAQRLISKLTQRKAKSKINIDISHNILNIEIIERSFLENFEYVRNLIENLRKFNVFFS 750

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDI 918
           +DDFGT  S LSYL  +  + VK + S +   ++K    +  +II ++K++    IA+ +
Sbjct: 751 IDDFGTGYSSLSYLSKLKVNFVKIDISFVRNLSDKDTKNVTNAIIALSKSLNIKTIAEGV 810

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
                 + L  MGCDY Q      P+  + +LK+L  
Sbjct: 811 ETVEQFETLKSMGCDYYQGFLFYKPMPKSELLKVLNS 847


>gi|260867929|ref|YP_003234331.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli O111:H-
           str. 11128]
 gi|257764285|dbj|BAI35780.1| cAMP phosphodiesterase, heme-regulated [Escherichia coli O111:H-
           str. 11128]
          Length = 799

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 232/526 (44%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR++  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRKNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVEIKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|304392109|ref|ZP_07374051.1| diguanylate cyclase/phosphodiesterase [Ahrensia sp. R2A130]
 gi|303296338|gb|EFL90696.1| diguanylate cyclase/phosphodiesterase [Ahrensia sp. R2A130]
          Length = 937

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/751 (19%), Positives = 287/751 (38%), Gaps = 38/751 (5%)

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
           ID+      + + S   L+  A    AL    ++     +          +    G    
Sbjct: 200 IDYSIAPSSIPVHSVADLLNDAIPAGALLEKKVLVGASSVELRDTLTVPVHGLLPGTLV- 258

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
             L   +       A    I +  + L     +     +      +L+   ++  +  + 
Sbjct: 259 QALATETLMQDRSLAFTDAIWVVLLALTLCLLLFIVSQRRSVPTQMLLTLIVIGGLELVA 318

Query: 354 LW--MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
            W  M     L    I  AL+      + +  +     +  +G  S+ +    +     V
Sbjct: 319 TWLQMRYALILVTAPIHLALILTGAGFIAIALYRSRILIARSGIESRDLR---QILRQVV 375

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             + D V   D     +  +  + T+ G   G +     N    +      +    L  F
Sbjct: 376 TDNFDAVLVCDPKGRVIFQSSAVQTVFGNHVGDVKRDNLNAAELL-PEPIVSEMLQLVGF 434

Query: 472 VGYRRGRLQYEFR---VRAADNQFHWMIIRIRP------------MSNSNGDIL---RYI 513
           +      L    R   V    ++   +   I P              NS+  ++      
Sbjct: 435 ISDPTDELPEPLRKTRVVDVVDEQRHVEYVITPSQLGVESVAELRHRNSSRHLMDNSFVC 494

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +A D+T  +  LE +  NA  D LTG  NR  F++ L   +    T++     +   ++
Sbjct: 495 LVARDVTADQLHLEEVQRNARFDRLTGAMNRAWFVECLDAAM----TNEANNTVIFTFEL 550

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
              + +N   G+  GD +LV +  R+         +ARL G+ F ++L   ++     + 
Sbjct: 551 HGMRAVNGTFGMDFGDRILVDMMLRLERFAPTGVSVARLEGDTFSVLLDVAHDEPAAREL 610

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A+ ++  +  P    + +  + +++  A+      +  + ++  ELA+  A    G  V 
Sbjct: 611 ALDLKHVLEEPYQTGKTKAFIRSTMVMATSWQGHNSGEDYVRAGELALAFAHENPGPAVT 670

Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +           + I+  L  A+EN E +LVY P +RL DE ++G EAL++W     G 
Sbjct: 671 VYAEQVGSKIQRMLKIERALWDALENDEFHLVYQPQVRLSDERVIGAEALVRWQSETLGP 730

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +   EF+ +AE    I+A+  F+L++  R+ ++W +        + +N ++  L   +  
Sbjct: 731 VYPDEFITVAERTGSIQALGAFVLDQACREALNWPE-----DTKVSVNASAAQLAVGDYV 785

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             ++  +  T    SR+ +  +ES+++ +   +   + RL+ +G+S+ LDDFGT  S L 
Sbjct: 786 GVVERTLKSTGLPASRLTIELTESMLVADAGAALAQMRRLKAMGVSIALDDFGTGYSSLQ 845

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P DT+K + + +        A  I+ S++ +AK +      + I       ++  
Sbjct: 846 YLSKLPVDTIKIDRAFVLDLERNEKAWSIIDSMLTLAKGMGIATCCEGIETSEHSDKMRD 905

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            GC   Q      PL  +     L +R  L 
Sbjct: 906 AGCTTAQGYLFGKPLSVDQFRAKLSQRQELA 936


>gi|330890740|gb|EGH23401.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 960

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|152965900|ref|YP_001361684.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360417|gb|ABS03420.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 692

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 212/440 (48%), Gaps = 12/440 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +  +A QD LTG+PNR+     +   L   A        ++ ID+D++K +ND  
Sbjct: 243 QMTTRLRRSATQDPLTGLPNRRLLHATVAAALARRAARGGAVAVLL-IDLDRFKHVNDTF 301

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L  +  R+   L   D+LARL G+ F ++    + ++     A  + +  A 
Sbjct: 302 GHEIGDALLQQVVPRLMAQLGPADVLARLGGDEFAVVCEDSSGAVGPVQTAARLTRVWAE 361

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P+ +  R + V+ SIG A       T   +L++A+ AMY +K RG    + F        
Sbjct: 362 PVLVDGRTLHVSGSIGVALA-GDGATPRTLLRDADAAMYESKRRGPGAFQVFSTDIAART 420

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIR---LMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +++++ L  AVE  EL + Y P++          VG EAL++W   + G +   EF+
Sbjct: 421 HRLLLLEQGLQRAVERRELAVHYQPVLALTGPRAGHAVGAEALLRWRSAELGPVGPDEFI 480

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AE   ++ A+  ++L+R+  D+  WR +        + +N+++  L    L   +  L
Sbjct: 481 PVAESAGLVNALGDWVLDRVMTDLAGWRARGQVDDDFQVAVNVSAHQLT-PVLPGQVAGL 539

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++       + L  +E+ V+     +  +L  LR +G+SL LDDFGT  S LS L  +P
Sbjct: 540 LARHGLGARSVGLEVTETAVVE-GGTAPQVLAELRDLGVSLLLDDFGTGYSSLSQLQELP 598

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD VK + S + G   + +  A++ +++ +A+ +   ++A+ +      ++L   GC   
Sbjct: 599 FDVVKVDRSFVAGMTRSARDRALVLAVLNLAEALGMAVVAEGVEEREQAEQLRVAGCSAA 658

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + A  +    +   L++
Sbjct: 659 QGWYFARAVPAAELPAALQQ 678


>gi|324007400|gb|EGB76619.1| PAS domain S-box [Escherichia coli MS 57-2]
          Length = 799

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----ISPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   +  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQISDELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|320324570|gb|EFW80647.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 960

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDMLLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|300976076|ref|ZP_07173273.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300308645|gb|EFJ63165.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|324015325|gb|EGB84544.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 807

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|88797343|ref|ZP_01112933.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Reinekea sp. MED297]
 gi|88780212|gb|EAR11397.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Reinekea sp. MED297]
          Length = 551

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 207/440 (47%), Gaps = 5/440 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              E I   A  D+LTG  N + F   +   +  +         V  +D+D+++KIN+  
Sbjct: 110 HRREVIRKMATHDSLTGSLNAEGFAGHVDQAIGTTKQTGRP-FGVCSVDLDQFQKINEEH 168

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+ + VL  + +R+  L+     + RL G+ F +++   ++  ++      +R S   
Sbjct: 169 GYAIANQVLCMVAQRLALLMGGRFSVGRLGGDEFLLLVEDLSDKEELLQALDLVRGSFGH 228

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L  + I  +A IG   +     TS E++  A  AM   K      V  +  S+    
Sbjct: 229 QFELFGKRIYASAYIGAVLYPDIVGTSEELIAQAHEAMVTGKR-HKQQVFLYDRSASPWF 287

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++ +  ++  A+   E  L Y P I L   ++VG+EALI+W+HP++G+I  S+F+ +AE 
Sbjct: 288 QMDMAAEIRRALREDEFQLHYQPRIDLKSRQVVGMEALIRWEHPRYGSIPPSDFIYVAEN 347

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI  +  ++L R  +D+     Q  M  + I IN++ K L D   C+G+   I     
Sbjct: 348 SGMILPLGNWILSRAEQDMAQLERQ-GMKGLNIAINLSFKQLQDPTFCDGLPRRILNWKS 406

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           + S+++   +E+ V+ NPE  +  L  +  +G+ ++LDDFGT  S L ++   P   VK 
Sbjct: 407 ARSQLEFELTETAVLSNPELVKKTLVAISDLGVKISLDDFGTGYSALVHVQEFPISIVKI 466

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    + R A  I+ SII  A  +   ++ + I     +++L RMGC+  Q    +
Sbjct: 467 DKSFVQRMAKDRSALTIVESIIGFAHRLNLEVVGEGIEQPDQLEKLQRMGCEQGQGYLFS 526

Query: 942 SPLGFNSILKLLKERFPLVK 961
             L     +   ++   +  
Sbjct: 527 KALPLAKFIDYARKANAISS 546


>gi|323692442|ref|ZP_08106677.1| hypothetical protein HMPREF9475_01540 [Clostridium symbiosum
           WAL-14673]
 gi|323503494|gb|EGB19321.1| hypothetical protein HMPREF9475_01540 [Clostridium symbiosum
           WAL-14673]
          Length = 708

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 237/572 (41%), Gaps = 34/572 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-----YIHINDR 461
            +L  + + D +++ ++ RD       +A    + +    G +   L       IH +DR
Sbjct: 38  YNLTSISAYDELFELNLTRDTYKILYHLAGKYVIPAEE--GSLGAMLDEVVTQMIHPDDR 95

Query: 462 DNFRTIL-----DSFVGYRRGRLQYEFRVRA--ADNQFHWMIIRIRPMSNSNGDILRYIG 514
           + F          + +         + R+R    D  + W+I  + P+     D    + 
Sbjct: 96  EEFLEFWSLDRMAACLQEEGEDHILKKRLRKLKTDGSYCWVIQIVVPLIQGEHDDKILMC 155

Query: 515 IANDITEQKKSLEG---ILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              DI EQ +  E       NA  +D LTG+  R  F     + L      ++    +MV
Sbjct: 156 FIQDIDEQMRKEEELSGKDKNADGKDPLTGLYRRSEFFRTAESFLREI---EDKSYCLMV 212

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLK 629
           IDI+ +K  N   G A GD  L+++ + + +       I   + G+ F IIL  +     
Sbjct: 213 IDIEHFKLFNQWYGEAEGDRFLINIAQHLKKAQDENRGIAGYMGGDDFVIILPDDG---- 268

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  ++  I   + L  +      + G  +  +  I  S M   A +A+   K    
Sbjct: 269 --KMLERLQNKIMGFVKLYGKNAGFLPAFGLYAIENKNIPVSTMYDRATVALASVKGNYA 326

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           + V  +         +  ++  ++  A+ N E      P   + + +IVGLE L++W+HP
Sbjct: 327 HRVCRYDSRMLEKMEEDHLLLSEVQRALNNDEFTFYLQPQCNMTNGKIVGLETLVRWNHP 386

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G IS  EF+ + E   +I +++L + E +   + SW D     P+ + +N++  D+  
Sbjct: 387 ERGVISPGEFIPLLESNGLIASLDLHIWENVCIRLRSWIDS-GKKPVPVSVNVSRVDIYT 445

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++ E    L++K    PS +++  +ES      +    ++  LR  G  + +DDFG+  
Sbjct: 446 IDVVECFCNLVTKYNLDPSLLEIEITESAYAEQYDIFTGVIENLRSAGFLVFMDDFGSGY 505

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDI 924
           S L+ L  +  D +K +   +     +  R   IL +II MA+ +E  +IA+ +      
Sbjct: 506 SSLNMLNDVKVDVLKIDMKFLKMYEQSPGRGTGILETIINMARFMELRMIAEGVETREQA 565

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + L  MGC Y Q  +   P+       +L + 
Sbjct: 566 ELLLDMGCIYGQGYYFYRPMPAPQCEVILADE 597


>gi|227821826|ref|YP_002825796.1| putative transmembrane sensory box GGDEF/EAL family protein
           [Sinorhizobium fredii NGR234]
 gi|227340825|gb|ACP25043.1| putative transmembrane sensory box GGDEF/EAL family protein
           [Sinorhizobium fredii NGR234]
          Length = 709

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 207/439 (47%), Gaps = 20/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +  E     A  D+L+G+ NR   LD L      S    +   ++ ++D+D +K +ND
Sbjct: 282 LHRLAETARFQANHDSLSGLLNRHGLLDFLE----RSEPTASSMLSLYLVDLDGFKAVND 337

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGD ++  + + +          ARL G+ F ++ +      +I      +   +
Sbjct: 338 AWGHAVGDALIRLVAKALPACHPEIVAAARLGGDEFALVQVGTAPHGEIERA---ILALL 394

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  + +R I V ASIG A   +  + S E+L+ A++A+Y AK  G      + +   R
Sbjct: 395 VEPFKIDDRTIEVGASIGAAV-RADSLASLELLRRADMALYRAKENGKGQAVQYDLELDR 453

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    ++ DL  A+ +  +   + P++     EIVG+EAL +W  P  GNIS   F+ 
Sbjct: 454 ERQRIAELEGDLRRAITSGAIEPAFQPLVSAATGEIVGVEALARWPSPA-GNISPEIFIP 512

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  + + ML    R   +W      P + + +N++   L + +    + A++ 
Sbjct: 513 LAEKSGLIDVLGVHMLRTAIRHTKNW------PGLALSVNVSPIQLCNPDFAAQVIAVLK 566

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  + P R+ L  +E V+M +P+++R  +  L+  GI   LDDFG   + +  L    FD
Sbjct: 567 EFDFDPGRLTLEITEGVLMTSPDQARRSIDHLKCFGIKFALDDFGCGYASIGALRQFGFD 626

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++G       I +LR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 627 RMKIDRSLVSGVENAVNGIEVLRATISLATALDIPVTAEGIENARQAAILRETGCDQLQG 686

Query: 938 SHVASPLGFNSI-LKLLKE 955
             V  P+    I ++LL E
Sbjct: 687 YLVGKPMSARDISIRLLHE 705


>gi|300917145|ref|ZP_07133832.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300415597|gb|EFJ98907.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 548

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/516 (24%), Positives = 228/516 (44%), Gaps = 35/516 (6%)

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG-DILRYIGI 515
           H  D +    +                R R  D     ++     +  S+G +   +I  
Sbjct: 53  HP-DYERLIQV------QNAQSWSATIRQR--DGAPAGILQ----IKTSSGAETSAFIER 99

Query: 516 ANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             DI+        EQ+KS + I      D +TG+P R +  + L  ++D +     + P 
Sbjct: 100 VADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPKRNNLHNYLDDLVDKA-----VSPV 154

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F  ++  EN+ 
Sbjct: 155 VYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFV-LVSLENDV 213

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             I   A  +R  ++ PI + ++   +T SIG +           +L  A  AM + +  
Sbjct: 214 SNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTAHNAMDYIRKN 271

Query: 688 GGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN  + F  +     +  +     L  A+ N++L LVY P I     E+ G+EAL +W 
Sbjct: 272 GGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWH 331

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  + +N+++   
Sbjct: 332 DPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA-LSVNLSALHF 390

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             N+L   +   +        ++ +  +ES++M +       +  LR +G+ L++DDFGT
Sbjct: 391 RSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGT 450

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS L  +P   +K + S +     ++   A+L +I  + +++  T++A+ +  +  
Sbjct: 451 GFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQ 510

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            + L ++ C  IQ    + PL    I   +    PL
Sbjct: 511 FEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 546


>gi|152967487|ref|YP_001363271.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362004|gb|ABS05007.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 774

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 211/455 (46%), Gaps = 14/455 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +    ++T            A  D+LTG+ NR++   R   +L  +    +    ++ 
Sbjct: 310 RLLFTFREVTRL----AEHRELALTDDLTGLGNRRALYQRTPEVLSRAGEGASAALLLLD 365

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLK 629
           +  D +K++ND LG   GD +L  + RR+         ++ARL G+ F ++ +       
Sbjct: 366 L--DGFKEVNDSLGHQAGDALLRDVARRLGEAAGTEDSVVARLGGDEFAVVRVGAGTGEA 423

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +A  A  + +++  P  +   ++    SIG +   ++    + +L+ A++AMYHAK +  
Sbjct: 424 VA-LAELLHETLRRPYAVEGVQVRARTSIGISVLPAASAELTTLLRQADVAMYHAKTQHL 482

Query: 690 NHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                       +    ++    L   +    + + Y P + +   E+ G+EAL++W HP
Sbjct: 483 GTFAYCAEIDQFASGERLETAELLRSDIAARRMVVHYQPKVDVASGEVHGVEALVRWQHP 542

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    F+ + E   +++ +   +LE+      +W       P+ + +N+++  L D
Sbjct: 543 RRGLLYPDAFLPVVESAGLMEDLTRAVLEQSLDQAAAWWRAGR--PLAVAVNLSASSLGD 600

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L + +  L+++       +++  +E  +M + ER++ +LG LR  G+ + +DD+GT  
Sbjct: 601 VDLPDRVSRLLAERRLPARLLEIEITEDFLMADRERAQGILGGLRARGVRVAVDDYGTGY 660

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P D +K + S +T      + +AI+ S I +A  +   ++A+ +  E+  +
Sbjct: 661 SSLAYLRELPIDDLKLDRSFLTDLTGDPRALAIVESTIALAHALGLRLVAEGVEDEVTSR 720

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            L   GCD +Q    A  +    +   L+   P  
Sbjct: 721 GLVAAGCDVLQGWLYAKAMPPADLEAWLRGHDPRT 755


>gi|329893993|ref|ZP_08270001.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [gamma proteobacterium
           IMCC3088]
 gi|328923336|gb|EGG30655.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [gamma proteobacterium
           IMCC3088]
          Length = 592

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 200/442 (45%), Gaps = 13/442 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +      D+LTG  NR   + +L      +         ++ +D+D++K +ND  
Sbjct: 154 EARQRLNHQLQHDDLTGTLNRHGLMAQLDQC---TQRQTASFGALLFLDLDRFKWVNDSF 210

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFA----IAMR 638
           G  VGDD+L S+T+ +  L     ++ARLSG+ F I+L S   +  +    A      + 
Sbjct: 211 GHHVGDDLLCSITQLLQLLTGDKGLIARLSGDEFVILLNSTHTDRKEAESIALELGHRIN 270

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFR 696
           + +  P+     +  ++ASIG   + + +   + +L++A++AMY +K        +    
Sbjct: 271 ERLISPMKAGRHQFQISASIGVRVFNAQETDYALILRDADIAMYQSKAHRNNRTVLYRPE 330

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +S     ++  + +L  A+     + + +         I G EALI+WDHP  G +    
Sbjct: 331 MSEALDQKLDKERELRSAILQGRGFKMMYQAQVNEQGNISGAEALIRWDHPAEGQLLPDR 390

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQ 815
           F+ +AE++ +++ +  ++++++  D     +    P    I INI+   L      E + 
Sbjct: 391 FISLAEDIGIMRELGAWIVKQVLADFKVAMNCGLPPSFERISINISPNQLEQRNFVEWLT 450

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +      R+ L  +E+  +GN E     + RL ++G+ + +DDFG   S L YL  
Sbjct: 451 DTLQRFDVPAERVCLELTENGFVGNVEPIIQKIRRLTELGVHVAIDDFGKGYSSLRYLQE 510

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D VK + + + G      A  + +SI+ +   +    +A+ I  + +   L   G  
Sbjct: 511 LPIDIVKIDKAFIRGVDNDARAANLSKSILLLCHALNMKAVAEGIETQAEADALIAQGYQ 570

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            +Q    + P    +++   K 
Sbjct: 571 RLQGFLYSRPEPLEALIARYKS 592


>gi|300950963|ref|ZP_07164839.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300956094|ref|ZP_07168416.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300317031|gb|EFJ66815.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300449759|gb|EFK13379.1| PAS domain S-box [Escherichia coli MS 116-1]
          Length = 807

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEIQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DLGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLSNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSCLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|323176587|gb|EFZ62179.1| putative enzyme [Escherichia coli 1180]
          Length = 807

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 232/526 (44%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR++  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRKNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVEIKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|260460285|ref|ZP_05808537.1| Diverse 7TM receptor transmembrane region [Mesorhizobium
           opportunistum WSM2075]
 gi|259033930|gb|EEW35189.1| Diverse 7TM receptor transmembrane region [Mesorhizobium
           opportunistum WSM2075]
          Length = 535

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 241/449 (53%), Positives = 322/449 (71%)

Query: 3   LSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQV 62
           ++N LR+    AF+I  +  L   S +FA+EPI I+  D  LDL+    IY NQGE+FQV
Sbjct: 1   MTNFLRNGPLFAFIIATILTLCAASSAFAVEPIKIARDDVALDLSGAVEIYRNQGENFQV 60

Query: 63  FTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122
            TA   DGI RRIEV A+  R  GDWAVFALANT+D QL+RLIV PH+RLV S  F PDL
Sbjct: 61  STAPGPDGIVRRIEVEANDARSTGDWAVFALANTTDQQLDRLIVAPHFRLVNSGIFWPDL 120

Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNFYK 182
           GS RI ++TPSEGF+LDR  + D+DVFR+T+NPG V+TFI E+++P LPQ+YLW+P  YK
Sbjct: 121 GSTRIAAITPSEGFALDRQTSPDADVFRVTLNPGTVITFIAELASPKLPQVYLWDPESYK 180

Query: 183 DTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
           D+VNS+TL+RGI+IG+A LLA+FLTI ++V  +SM   T A+AW VL YI +DFGFL+K+
Sbjct: 181 DSVNSYTLFRGIVIGIAGLLALFLTILFVVKGTSMFPATAALAWAVLAYICVDFGFLNKI 240

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
           + +  G   +WRA +E+AL+++ ++FLF YL+ NRWH    Y     I  + ++  ++  
Sbjct: 241 IEISPGNEQMWRAGTEVALAATFVVFLFAYLNLNRWHGHFSYGALVWILGLVLIAGVAIV 300

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
            P V A IARI+ A+  L     II+ G++GY+RA++L+P+W+++ +W  G WMAIT  L
Sbjct: 301 DPAVAAGIARISFAATALTGLGLIIFLGIRGYDRAIMLVPSWVMVLLWLCGSWMAITGML 360

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
           DNDI QPAL GGL+LI++LIGFTV+QH  A G   QG+FSD ERQ+LAV GSGD VWDWD
Sbjct: 361 DNDIAQPALGGGLILIILLIGFTVMQHAFAGGALHQGLFSDLERQALAVAGSGDTVWDWD 420

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRN 451
           ++RDRV T PD++  LGLA  S+ G    
Sbjct: 421 VLRDRVVTKPDVSIQLGLAPNSLGGRRAT 449


>gi|71734942|ref|YP_274784.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555495|gb|AAZ34706.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 960

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWRDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDMLLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|225571422|ref|ZP_03780418.1| hypothetical protein CLOHYLEM_07520 [Clostridium hylemonae DSM
           15053]
 gi|225159898|gb|EEG72517.1| hypothetical protein CLOHYLEM_07520 [Clostridium hylemonae DSM
           15053]
          Length = 559

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 103/550 (18%), Positives = 216/550 (39%), Gaps = 25/550 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V  + D ++  DI +D    + ++A    L    + G I  W   IH  DR  +   +D
Sbjct: 22  IVNSTEDYIYIVDITKDISLVSENMARDFDLPGRLVPGLIPLWGELIHEKDRQRYYDSID 81

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +         E+++    N++ W+  R     + +G    + G+   +  + K     
Sbjct: 82  EMMAGYTDIHNVEYQILNKKNEYIWVCCRGLLTRDESGAPTMFAGVVTPVGSKGKM---- 137

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                 D  TG+  ++   + +   L+L     N     +++ ID +K+IN++     GD
Sbjct: 138 ------DRTTGLFTQEECKNHIEAYLNL----GNTSGGFLLLGIDDFKRINNLKNHTFGD 187

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL  + + I  ++     + R  G+   +          + D    +         +  
Sbjct: 188 TVLRKIAQDIQHMIPHKAEIFRFDGDEGAVFSPGAT-LEDMYDLYSKIHLYANKEHEIDG 246

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMI 707
                T S G A   +      +++K A  A+  +K +G N   +F  +        + +
Sbjct: 247 ISYYCTISGGVAMLGTDADNYLDLIKCAMSALEASKKKGKNMCTAFTPALLQSNLYIMEL 306

Query: 708 KEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             +L   V N      +VY P ++     + G EAL++W  P    +  +EF+ + E   
Sbjct: 307 TNELQRCVMNGMEGFSVVYQPFVKTDGLCLKGAEALLRWSSPAVKKVGPAEFIPLLESSG 366

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +  ++L++       W      P   + IN++   +++ +    ++ L+ K     
Sbjct: 367 TIVPVGKWVLDKAFCTCKKWVA--RWPDFVMNINVSYVQIIEKDFVPYIEELLKKYDLPA 424

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I L  +ES  + +    +    RLR I I + +DDFGT  S L  L     D VK + 
Sbjct: 425 RHIVLEMTESYFVTDMPALKTTFQRLRDIDICIAMDDFGTGYSSLGMLSQTLADIVKIDR 484

Query: 886 SLMTGSTEK----RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
             ++   +K      + ++++I +  +I  ++  + +    ++  +  M  D IQ  +++
Sbjct: 485 MFISLINDKEHFFNRSFIQAVINLCHSIGISVCVEGVECADELDTVQNMSADSIQGYYIS 544

Query: 942 SPLGFNSILK 951
            P+  +   +
Sbjct: 545 KPVSQDEFEE 554


>gi|331008592|gb|EGH88648.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 960

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|307553497|gb|ADN46272.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli ABU
           83972]
          Length = 799

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGIETKEQFEMLHKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.6 bits (125), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|39933860|ref|NP_946136.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39647707|emb|CAE26227.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 605

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/553 (22%), Positives = 230/553 (41%), Gaps = 22/553 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D       V      V   D     +      A    L   S        L        D
Sbjct: 37  DLRLFKEIVRALPSAVTVQDEQGRFIFINDAAAAQYRLPPSSTDAAGNLPL--------D 88

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R+   + +   +   + E R+         ++   +PM +  G  L  +  + D+TEQ
Sbjct: 89  RRRSDGAALLAQGQSGTREE-RI-TFGGATRALLTAHKPM-DIAGRKL-LLSSSLDVTEQ 144

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   + +   A+ D LTG+PNR      +T +L+           +  +D+D +K IND 
Sbjct: 145 KVIEDELFRRAYYDELTGLPNRAVIERHVTELLEDHRPH---HFALAFLDVDNFKHINDY 201

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G +VGD +LV + +R+   L+  D+L+R+SG+ F ++L    +  ++A+    + + + 
Sbjct: 202 YGHSVGDALLVGIAKRLSLELRDTDVLSRISGDEFLLLLDPITSEAEVAEHINFLLQRLK 261

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P  +   E+  +ASIG + +     +   + +NA++AMY  K  G      F   +   
Sbjct: 262 APFYIDGTEVFASASIGISLYPEHGRSYEALRQNADIAMYRVKSDGKGASAIFNIAMERE 321

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ +++ L  A+ +      + P + +   EI G+EAL++         +   F+ +
Sbjct: 322 ALERMAVEQSLRQAILDRRFCCAFQPKVDIRTNEIKGVEALVRLRDDNGVIQAPGTFVDL 381

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A EL +I  +   +L  I + I             I +N+A+K     +        ++ 
Sbjct: 382 AVELGLIDELTHLVLAEIMKSIDLINATFG-EDASISVNVAAKQAGSPDFMRSFCEALAA 440

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P R  +  +E   +      + +L  LR+IG+ +++DDFG   S LS L  I  D 
Sbjct: 441 TEC-PKRFMVEITEDAFVAKAHFQKQILPMLREIGVGISIDDFGIGYSSLSALADITADE 499

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQD 937
           +K + S +T      +   ILR+I  ++  +   +IA+ +    ++  L  M    Y Q 
Sbjct: 500 IKIDRSFITDIHKRPRSQGILRAIESLSDALGMAVIAEGLETFEELAYLQAMTRIRYAQG 559

Query: 938 SHVASPLGFNSIL 950
            + + P+    + 
Sbjct: 560 YYYSKPIFLEELR 572


>gi|159039854|ref|YP_001539107.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Salinispora
           arenicola CNS-205]
 gi|157918689|gb|ABW00117.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Salinispora
           arenicola CNS-205]
          Length = 842

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/777 (17%), Positives = 286/777 (36%), Gaps = 46/777 (5%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWR--ACSEIALSSSLIIFLFMY-- 272
           +L     +A  V+  I +    L  +       L  +     + +AL     +    +  
Sbjct: 49  VLFVMMVVAGTVVLQIVVRRQALEVIATEIPLVLAFYYLPPLTVVALMVLSALVAQHWRR 108

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI--VLYYTYFIIYHG 330
           L   +    V     +      +L  +S        + A +        +     I    
Sbjct: 109 LGAVKVGFNVARTGAAASLGGVVLVGLSGVDGAGPRTWAVLFAVVTVNSVVSLIAISGVV 168

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
              +                 +     +   +    ++      L++ V+ +   VI   
Sbjct: 169 SLLHGWQTGWELVRRSPVPLMVNFINVVIGLILLLALESTWWSMLLIAVLAVAMVVIYRS 228

Query: 391 LATGYFSQGIFSDGERQSLAVLGSG--DIVWDWDIVRDRVTTTPDIATIL----GLASGS 444
            A         S     + A+   G    + D  + R R     + AT+     G     
Sbjct: 229 YAQFLRQHRTLSSMYELTQAMTEGGREGGIADVLLGRIRALMQAEYATLWLPARGRYPEL 288

Query: 445 MHGPIRNWLPYIH----IND-RDNFRTILDSFVGYRRGRLQYEF-RVRAADN---QFHWM 495
           +     +    +       D R+  R   ++    R      +  R  A           
Sbjct: 289 LLSARVDDRGLLDVAPTPADLREQVRESGETLAAGRGLPKSPDISRDLAGHGLKDVIVVP 348

Query: 496 IIRIRPMSN----------------SNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNL 538
           +   + +                   +  +   +     +  E  + ++ +  +A  D L
Sbjct: 349 LRSGQAVIGTLEVVNRLSAGGHFTPDDIQVFETVAAHTAVALENSRLVDRLRHDADHDTL 408

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PNR+     L   +            +++ D+D+ +++N+ LG A GD VLV +  R
Sbjct: 409 TKLPNRRQVTAALDEAVK--IRAPGEVVALLLFDVDRLREVNESLGHAAGDKVLVEVAER 466

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +        ++ R+ G+ F + L     + +  D A  +R+ I   +      + V  ++
Sbjct: 467 LRSCAPSSALVGRVGGDEFLVTLR-LEGATEALDLAAGLREQIRAVVTFDGLTLDVDTAV 525

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
           G A        ++ +L+  +LA+  AK   G   + +  + S    R+ +  DL  A++N
Sbjct: 526 GVAVHPDHGSGAAVLLQRVDLAVTAAKSASGSVRLFNPALESRSLRRLGLAGDLRRALDN 585

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            EL + + P + L D  +VG+E L +W+    G ++  +F+ +AE    +  +  F+L  
Sbjct: 586 GELEVYFQPKVTLRDRRLVGVECLARWEDRALGPVAPEDFVAVAEHTGQLGRLTEFVLRE 645

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R    W       P+ + +N++ + L D      ++ L+ +    P R+ L   ES V
Sbjct: 646 GLRRSRDW--AHGGHPLSVAVNLSPRTLTDQHFPAQVRELLEEYGVPPQRLTLEIRESGV 703

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           +   +R   +L RLR +G+ L++DDFGT  S L++L  +P   VK +   + G       
Sbjct: 704 LDGTDRPIPILCRLRDLGVRLSVDDFGTGDSSLAHLRRLPVHEVKVDHRFVQGMATDPGD 763

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +AI+ +++ +++     ++A+ +  E+ ++ L  +GC+  Q    + PL +  +   
Sbjct: 764 LAIVNAVVTLSQQFGLAVVAEGVESELTLELLQDIGCEIGQGFLFSRPLPYERLEAW 820


>gi|323187336|gb|EFZ72647.1| putative enzyme [Escherichia coli RN587/1]
          Length = 807

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIEDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRSAHPQYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|258651249|ref|YP_003200405.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nakamurella
           multipartita DSM 44233]
 gi|258554474|gb|ACV77416.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Nakamurella
           multipartita DSM 44233]
          Length = 853

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/752 (17%), Positives = 273/752 (36%), Gaps = 62/752 (8%)

Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF---SGIACIAILFCMSFYYPMVTAS 309
                   L +S ++FLF           + +I     +    + ++   +   P+    
Sbjct: 98  AWTVGLTHLVASGLVFLFRRDSSRNIAVNLSFIAAETGAAALIMLLITRAAPAPPVGVQY 157

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERA--------VLLIPAWILIFIWFIGLWMAITKR 361
           +A           +   +    +    A          +I A  ++    +G  + +   
Sbjct: 158 LAVSVGVLTGALLSAIAVGLTYRLLGPAEPLGRIIVRSMISALAIVTFALVGYTVWMAGP 217

Query: 362 LDNDIIQPALVGGLVL----IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
               +         VL     V L     +  + +       + +  +     +    D 
Sbjct: 218 FGPWLCVALAGVLAVLYRTYFVFLRQHADLTRMYSFVREVGAVGAAADGWRGVLEQVRD- 276

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI--------------NDRDN 463
              ++     +       ++ G+A G         LP                   DR  
Sbjct: 277 --QFNAEVAVLRLDEGDGSLAGIAVGPDGPRPERTLPDTDPLLVQARSEGRVRVSTDRTM 334

Query: 464 FRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRP---MSNSNGDIL----RYIGI 515
              +L +    +    L    R    D  +  +  R+       + +  +L     ++  
Sbjct: 335 DTPVLAALAERQAWDVLVVPLRSGDRDRGYLELHDRLSRWDRFRDEDLRVLETLGGHVAT 394

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           A D     + ++ +   A+ D +TG+ NR          +            +++++++ 
Sbjct: 395 ALD---NLRLMDSLRHEAYHDAITGLRNRVGLTVAGQEAMS-----GGGGGAILLVELNV 446

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
             ++N+ LG   G+ +L     R+  L+     +AR+  +RF ++      +  +     
Sbjct: 447 LSQVNNALGHDRGELLLRMAGERLVALVGPTRPVARIEADRFAVLCEPLPETE-LTALGG 505

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWT--------SSKITSSEMLKNAELAMYHAK-H 686
            M  ++    ++   EI    ++G A            S +  S +L+ AE+AM  AK  
Sbjct: 506 QMLSAVGGGYSIDGIEIDPQGAVGIAVVPAGAAGHGSDSGLEPSVLLQRAEMAMLAAKVR 565

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           +    +    +      R  +      AVE   + + Y P + L   E+VG+EAL++W H
Sbjct: 566 QESVQIYRPSMGEVYRRRFQLVTQFRQAVEQGRIIVHYQPKVDLAHRELVGVEALVRWMH 625

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G +S +EF+   E    I  +   +L+ +   +  WR       I   +N++  +LL
Sbjct: 626 PEFGLVSPAEFVEAIEATGSIDILLEHVLDSVLAQLWQWRSAGLH--ITASVNLSVHNLL 683

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  + A + +       +    +ES VM +PE S  +L  L  +GI L++DDFGT 
Sbjct: 684 AENFPATVAAALRRHQVPAQLLTFEITESNVMTDPEHSLPVLRELHAMGIQLSVDDFGTG 743

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+YL  +P D +K + S + G       +AI+R+I+ +  ++   ++A+ +  E   
Sbjct: 744 YSSLAYLRRLPIDEIKIDRSFVQGMGTDLSDLAIVRAIVDLGHSLGLRVVAEGVEEEAAR 803

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L  M CD  Q   ++ P+  +     L  R
Sbjct: 804 DALREMACDEAQGFLISRPVPLDRFEAWLASR 835


>gi|227886122|ref|ZP_04003927.1| cAMP phosphodiesterase [Escherichia coli 83972]
 gi|300972165|ref|ZP_07171846.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301046538|ref|ZP_07193688.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|227836879|gb|EEJ47345.1| cAMP phosphodiesterase [Escherichia coli 83972]
 gi|300301482|gb|EFJ57867.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300410999|gb|EFJ94537.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|315291418|gb|EFU50778.1| PAS domain S-box [Escherichia coli MS 153-1]
          Length = 807

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 126/526 (23%), Positives = 228/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLHKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|325292087|ref|YP_004277951.1| GGDEF family protein [Agrobacterium sp. H13-3]
 gi|325059940|gb|ADY63631.1| GGDEF family protein [Agrobacterium sp. H13-3]
          Length = 450

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 220/441 (49%), Gaps = 10/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
               S   +   A+ D LTG+ NR    D++  +L    + D    TV + +ID +K IN
Sbjct: 8   ALHVSQNELQAMAYSDPLTGLGNRYRLRDKI-RMLASERSSDPAPFTVGIANIDGFKPIN 66

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G+  GD++L  +  R+   +     + R  G+ F  +L               ++  
Sbjct: 67  DLFGVQAGDEILCQVAHRLKACIPDGAAVTRHDGDEFAFVLPLVFERTGAERIGNMIKDV 126

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P +L +R + +++S GFA +  +     ++LK+AE A+Y +K RG   +  +     
Sbjct: 127 LSAPYDLGDRNVRLSSSFGFAIYPFAGDDFEDLLKSAETALYRSKRRGRGQITVYSREIA 186

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  +    +++ L  A+    + + + PI+RL + +++G EAL +W+ P  G +S + F+
Sbjct: 187 QEMKRATQLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFVSPAVFV 246

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I A++  +L + A   + W  +     +F+  N++S  L+D    + + +++
Sbjct: 247 PLAEERGFIDALSEALLRKAAEAALFWPRE-----LFLSFNLSSAQLMDPGTADNILSIL 301

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+    P R++L  +E+ VM + + ++ ++  L+  G+ ++LDDFGT  S L  L    F
Sbjct: 302 SRVGLDPHRLELEITETAVMTSADTAQRIISELQGAGVRISLDDFGTGQSSLGRLRDFTF 361

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK + + ++  +  R    I+++I+ M + ++  ++A+ I  + + ++L  +GC   Q
Sbjct: 362 DKVKIDRAFVSRISSDRPSEHIIKAIVAMCEGLDLEVVAEGIEEQAEEEKLRALGCAMGQ 421

Query: 937 DSHVASPLGFNSILKLLKERF 957
                 P    +  + L E +
Sbjct: 422 GYFYGRPADAAATQRYLHENY 442


>gi|320328942|gb|EFW84941.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 960

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDMLLVQAAERLRSCMREEDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|78776279|ref|YP_392594.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78496819|gb|ABB43359.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 623

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 215/437 (49%), Gaps = 14/437 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A  D LT + NR+ F++ L   +    +++     + +ID+D +K IND LG  
Sbjct: 181 QKNQYQANHDYLTNLGNRRYFVELLKDAIKKQKSNNKYMF-LFLIDLDHFKTINDTLGHD 239

Query: 587 VGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS----LKIADFAIAMRKSI 641
           +GD +L  + +R+G L K     ++R+ G+ F ++  +  +      +   FA  + ++I
Sbjct: 240 IGDKLLSEVAKRMGLLAKLNRSTISRIGGDEFCLLSDTYEDKVTCLKRAQSFAQELLETI 299

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                + E  + +++SIG +   +  IT++ ++K A++AMY AK +G + V  F      
Sbjct: 300 KHTYIVDEHNLYISSSIGVSIIDNPNITANTLIKEADIAMYEAKLKGRDGVILFNNELSV 359

Query: 702 SDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                ++ +  L  A++  E+ L Y P +     ++VG E L++W + + G++   EF+ 
Sbjct: 360 RVERKLEVERFLRFAIKKEEITLNYQPQVDKK-GKVVGCEVLVRWHNEQLGSVGPDEFIP 418

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I+E+   I  +  ++LE   + +  W  +      F  INI+ + +  N   + M  L +
Sbjct: 419 ISEQTGFIIELGHYILEESFKTLSEWDKKGLKLEQF-SINISMRQMFCNTFIDDMLLLCA 477

Query: 820 KT--LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           K       S++    +ES    +  +    + R +  GI  ++DDFGT  S LSYL  IP
Sbjct: 478 KYLNDSLSSKLIFEITESSAAEDIPKLINTMNRAKACGIRFSMDDFGTGYSSLSYLRQIP 537

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + + +   G+ +K   ++++I+ +AKN+  +++A+ +  ++  K L    CD +
Sbjct: 538 IYELKIDKAFINELGNPKKDANMVKTILNIAKNLGLSVVAEGVETQMQEKFLIDEKCDIL 597

Query: 936 QDSHVASPLGFNSILKL 952
           Q  + + PL  +   + 
Sbjct: 598 QGYYFSKPLSKDKFEEF 614


>gi|330985269|gb|EGH83372.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 960

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|114775694|ref|ZP_01451262.1| Hypothetical protein yddU [Mariprofundus ferrooxydans PV-1]
 gi|114553805|gb|EAU56186.1| Hypothetical protein yddU [Mariprofundus ferrooxydans PV-1]
          Length = 518

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 205/446 (45%), Gaps = 17/446 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++  +E        DNLTG+P    F + +   +  +  D + R +++VID      IN 
Sbjct: 76  RQTIIEQEDRLLLHDNLTGLPCGPLFHEVINHEIHEAIRDLS-RISLIVIDPQGISDINQ 134

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI--------LARLSGNRFGIILISENNSLKIADF 633
            +G  VGDDVLV + + I  + +  D+        +ARL+G+RF  IL +  +       
Sbjct: 135 EMGFQVGDDVLVHIAKAIQGVCRDSDMIASLNESSVARLNGDRFA-ILAAHTDMAGSKVV 193

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHV 692
              +R++   P  +    I + ++ G A +      + E+L+ A  A+  AK     +  
Sbjct: 194 EKKIRQAADTPFEVGGVTINIISTTGIAIYPDHADNAEELLRCANAALETAKQEQLSSVT 253

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                SS  S R+ I   +  A+ ++   L Y P + L    +  +EALI+W       +
Sbjct: 254 YKEARSSAASRRIEISSRIRQAIASNRFTLFYQPKVSLETNRVCAVEALIRWLGEDG--L 311

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ IAE   +I  I  ++++        W        I I +NI+++DL D++L E
Sbjct: 312 SPAEFIPIAESQGLIGKITTWVIKEAVEQCKLWESDG--IKINIAVNISARDLHDSQLIE 369

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                  +    PS I +  +ES VM +PE +   L  LR  G  ++LDDFGT  S LSY
Sbjct: 370 LFVDTCREHKLDPSSITIEVTESSVMAHPELAIERLQVLRDAGFRISLDDFGTGYSSLSY 429

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  IP   +K + S +       +   + R +I +A +++ +I+A+ +  E  +  L  M
Sbjct: 430 LKNIPAHELKLDQSFVANICSDSRDERLARGVIDLAHDLKLSIVAEGVETEDVMLMLKEM 489

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            C+ +Q    + PL   S     K+R
Sbjct: 490 NCEIVQGYFYSRPLDAASFKTWYKQR 515


>gi|289677646|ref|ZP_06498536.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 398

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 193/396 (48%), Gaps = 6/396 (1%)

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D D +++ ND LG   GD +++ +  R+   L   D +ARL G+ F +++ +     +  
Sbjct: 2   DRDNFRRANDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTRTAPERAL 61

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   +A P  +    + +  S+G A   +    +  ++ +A +AM  AK   G  
Sbjct: 62  QMAERITDVLAEPYWVDGESLLLGCSLGIAHSQAQPE-ADPLMWHAHIAMRQAKSMQGCT 120

Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F     R+ R    ++ +L  A+   EL L Y P + L    IVGLEAL++W H + 
Sbjct: 121 YHLFDERINRNARSLADLEGELRRALRRDELELHYQPRLCLDSGRIVGLEALVRWRHQER 180

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  SEF+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++
Sbjct: 181 GLLPPSEFVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQ 239

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  LI++    P  ++   +E+ VM   ++ R  +  LR++G+  +LDDFGT  S 
Sbjct: 240 LLPTLNRLIAEHNVDPRWLEFELTETAVMRRSDQVRQTMDALRQLGVRFSLDDFGTGYSS 299

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             +L  +P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L
Sbjct: 300 FMHLNSLPIALLKIDMGFVGQMELREENRKLVNAMINLAHNLNLEVVAEGVETAGQLELL 359

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              GC+ +Q   ++ PL    ++  L+ +      +
Sbjct: 360 RSFGCNQVQGYLISRPLPVEELVTYLRSQAAHADTS 395


>gi|295687738|ref|YP_003591431.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
 gi|295429641|gb|ADG08813.1| diguanylate cyclase/phosphodiesterase [Caulobacter segnis ATCC
           21756]
          Length = 555

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/555 (23%), Positives = 242/555 (43%), Gaps = 36/555 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+ G+   +W W+   DR+      A  LGL   +       +       DR     +L 
Sbjct: 19  ALGGADVALWIWEPESDRLRLN-GAARALGLGPLAPECSSAAFRALALPQDRAQAEEVLK 77

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             V      +   FRVR        +    R +    G  +R  G+         + E  
Sbjct: 78  --VREPGQPVVARFRVR---GGEVCLW---RGVWLEEG--VRAAGVV--------AAETK 119

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              + + +LTG+ +R+ F+ R    L      +     ++V D+D+ +++N+ LG    D
Sbjct: 120 FSASERCDLTGLLDRRGFIARARERLAEPGPHE-----LVVADLDRLRRLNEALGHDRAD 174

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL +L  R+        +L R+  + F ++   +         A  +R+++  P+ +  
Sbjct: 175 LVLAALGSRLVAAFPSDAVLGRIGEDEFAVLCKPDG-----YAPAEMLREALEQPLRIAG 229

Query: 650 REITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
            +I  T S+G  S      T    E+L+ AELA+  A   G     ++  S       R+
Sbjct: 230 FDIHPTLSVGAVSAEGGLETPDPTELLRRAELAVEAAAAAGRGGAAAYGRSMETDGLSRL 289

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A+   E+   + P++RL    + G EAL +W HP+ G +   EF+ + EE+ 
Sbjct: 290 ALEADLRGAIGRGEIIPYFQPVVRLSTGALSGFEALARWIHPRRGMLPPDEFLPLIEEMG 349

Query: 766 MIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYS 824
           ++  +   M+   AR +  WR        + + +N+++ ++    L + +   +      
Sbjct: 350 LMSELGAHMMHAAARQLSIWRACHPAMSAMTVSVNLSTGEIDRAGLVDDVAQTLRDNNLP 409

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +KL  +ES +M +PER+  +L  LR+ G  L LDDFGT  S LSYL  +PFDT+K +
Sbjct: 410 RGALKLEVTESDIMRDPERAATVLKTLREAGAGLALDDFGTGFSSLSYLTRLPFDTLKID 469

Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +   G+      I+RS++ + ++++  ++A+ +      + L  +GCDY Q    A 
Sbjct: 470 RYFVRTMGANAGSAKIVRSVVKLGQDLDLEVVAEGVENAEMARALQGLGCDYGQGFGYAP 529

Query: 943 PLGFNSILKLLKERF 957
            L        L E +
Sbjct: 530 ALSPQEAEVYLNEAY 544


>gi|163731983|ref|ZP_02139429.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
 gi|161394281|gb|EDQ18604.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
          Length = 681

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 216/447 (48%), Gaps = 6/447 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   + + ++  A  D LTG+ NR++  + ++     SA   +    ++ +D+D +K++N
Sbjct: 236 ELVAARQALMRAANHDALTGLFNRRAVYEHMSGS-GNSAQGGDFTRCILKLDLDLFKQVN 294

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VLV + + + EL +  D + R+ G+ F I++ +  +   I D A  +  +
Sbjct: 295 DSLGHDAGDRVLVRVAKILQELTRPGDFVGRIGGDEFVILIDNPRDLKMIQDLAQRIVTA 354

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  PI L   +  + ASIGF    SS  T  ++L  A+LA+Y AK  G + V ++    +
Sbjct: 355 VGKPIELDRIQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKRGGRSQVCAYSNALA 414

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R ++  ++  A+E  +    + P +     EI G E L +W HP+ G +  + F+
Sbjct: 415 EEIETRRILFNEINAALEEDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATFI 474

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE  MI  I+  M+E+    +  + +     P  I +N +   L D  L + +   +
Sbjct: 475 AAAEEAGMIHQIDQIMVEKGLDALEVFMELGMYVPA-ISVNASPPTLRDPHLTDRLLQAV 533

Query: 819 SKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                 PS + +   ES ++ N +  + L +  L + G S+ LDDFGT  + +S L  + 
Sbjct: 534 HARHLPPSVLTVEVLESTLIENDDDVALLTIENLSEAGFSVVLDDFGTGYASMSNLSRLR 593

Query: 878 FDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            + +K + SL+      +  +I+ +++ ++ N+   ++A+ +      + + R+GCD +Q
Sbjct: 594 LNGIKLDQSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAHFETVKRLGCDVVQ 653

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              +  P+   ++++   E     K  
Sbjct: 654 GFGIGRPMPQQALIEWYNEYTAQQKRA 680


>gi|329848365|ref|ZP_08263393.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328843428|gb|EGF92997.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 659

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 201/468 (42%), Gaps = 18/468 (3%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE----GILCNAFQDNLTGIPNRQSFLDRLTTI 554
           I  +   + D    I    D+T ++   E         A  D LTG+PNR+ F       
Sbjct: 188 ISVLLTHDRDFKELISSRRDLTAKQAETEALSNENFRIANLDALTGLPNRRRFFHD-AEA 246

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPDILA 610
           +  +A        + VID+D +K +ND  G A GD VLV    R             ++ 
Sbjct: 247 VFAAAEAGGKALAIGVIDLDGFKPVNDTFGHAAGDRVLVEAAERFQRAAAETGHPEVMVY 306

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ FG+++  E  +  + D    + ++ + P         +  SIGFA W  S  T+
Sbjct: 307 RLGGDEFGLVVQGELRTGVLEDLGRRLTEATSRPFAAGGAHTQLACSIGFALWPQSGTTA 366

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728
             + + A+ A+YHAK         F             ++  L  A  ++EL LVY P+I
Sbjct: 367 ESLFECADYALYHAKRHLRGQTVLFSTDHQAEILNQSVVERSLQAADLSAELSLVYQPLI 426

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L     VG EAL +WD+P  G ++ + F+  AE   +I  +   +LE+  R+  +W   
Sbjct: 427 DLRTGRTVGFEALARWDNPSLGRVTPAVFIPAAERAGLIGTVTRVLLEKALREARTWPPA 486

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  +  N+++ D+   E    + A++  +   P RI    +E+ +  + ER+   +
Sbjct: 487 MG-----LSFNLSAHDICAAEGVVRLIAIVHASGIDPKRIDFEITETAMTADFERACQSV 541

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMA 906
             L+ +G  ++LDDFGT  S LS++  +P D +K + S +           I++S+  + 
Sbjct: 542 NTLKALGCQVSLDDFGTGYSSLSHVHRLPLDRIKVDRSFVADLDTNPASRKIVKSLTSLC 601

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +   T + + +     ++ L  +  D  Q    A P+    I   L 
Sbjct: 602 LDFGLTSVIEGVETAQQLEVLAGLNGDLAQGFLFACPMPAAEIPAYLA 649


>gi|209525249|ref|ZP_03273791.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209494264|gb|EDZ94577.1| diguanylate cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 366

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 201/367 (54%), Gaps = 6/367 (1%)

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLE 649
           +L  + + I  L++  D+LARL G+ F I+L     + +    A  + +S+   P+ + +
Sbjct: 1   MLSLVAKIIQNLVRDTDLLARLGGDEFVIVLEDLEATNEATRVAERILESLRSSPLQVGK 60

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMI 707
           R++ V +SIG    T+    + ++L++A+LAMY AKH G      F   +      ++ +
Sbjct: 61  RDVFVNSSIGIVVRTNRHEKAEDLLRDADLAMYRAKHEGRGRYAIFDPLMHFQAVQQMHL 120

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL  A+EN++L L Y PI+ + ++ I GLEAL++W HP+ G ++   F+ IAE   +I
Sbjct: 121 ENDLRKAIENNQLVLYYQPIVNIKNQRIQGLEALVRWQHPERGLLAPGHFINIAENTGLI 180

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L    + +  W +Q     + + +N++ K L D  L E +  +++      + 
Sbjct: 181 IPIGRWLLHTACQQLAEWENQFPHHFLKMSVNLSVKQL-DIFLLEQLDEVLNNYNLKQNS 239

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES+++ N E++  LL +++  GI L++DDFGT  S LSYL  +P +++K + S 
Sbjct: 240 LVLEITESMLVANIEKTCDLLNQIKAKGIGLSIDDFGTGYSSLSYLHQLPVNSLKIDRSF 299

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++    +++   I +SII ++K ++  +IA+ +        L ++GC+  Q    + P+ 
Sbjct: 300 VSPANLSDRHQVIAKSIIALSKLLKLHVIAEGVETPEQFHWLKKLGCEAAQGYLFSRPVP 359

Query: 946 FNSILKL 952
            + I +L
Sbjct: 360 ASDITEL 366


>gi|86146616|ref|ZP_01064938.1| FOG: EAL domain protein [Vibrio sp. MED222]
 gi|85835673|gb|EAQ53809.1| FOG: EAL domain protein [Vibrio sp. MED222]
          Length = 1035

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/588 (19%), Positives = 225/588 (38%), Gaps = 31/588 (5%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----- 438
                + V +       +F       L       ++   D+             +L     
Sbjct: 460  LFEARDVTSRKLAENKLFQREANLKLYYDKQPVMMITLDVNNRIQQVNQFAEELLGYPLD 519

Query: 439  ---GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
               G      +      +P          R IL       RG  + +   R AD +  W+
Sbjct: 520  LLLGHRPREFYVDENAMIP----------RHILLQPQHKIRGVWRRDIEYRHADGRTIWI 569

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               IRP+ +S G +L  +G   DITE ++  E +   A  D LT   NR  F   L   L
Sbjct: 570  RENIRPLVDS-GQLL-IVG--EDITETRELSEKLEYQARYDLLTDTFNRNHFEQELQKAL 625

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                +       ++ +D+D+ K +ND  G   GD  ++     I ++L +  +LAR+ G+
Sbjct: 626  KEVESHMRTH-AMLFLDLDQLKVLNDTAGHEAGDAAILFSANLIEDVLPYNAVLARMGGD 684

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++        +      +      P    +  + +T SIG      +  +S  +  
Sbjct: 685  EFAVLIKDCTERDAVNVCHSIISMMSENPFLWGDIHLNLTCSIGIRLIDHTAASSQMVHA 744

Query: 676  NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-L 730
             A+ A + AK  G N    + +      R  ++ +    +  A+ N  L L    I+   
Sbjct: 745  QADAACHAAKEEGRNRYHLYHLDDEDLRRRHLEMECVNLVHEALANDRLELFAQRILGLE 804

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             +   +  E L++  + +   IS   FM  +E   +   I+  ++ +    +       +
Sbjct: 805  ENSNKMHFEILVRIKNVQGEYISPGIFMPASERYNIAHLIDRQVVSQTLNWLEQRPHLVD 864

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
               +   IN++   + + E  E +   ++ +     ++ L  +E+  M N +++     R
Sbjct: 865  DLGM-CSINLSGHSMGNREFVEFLIESLANSSVPCHKVCLEITETAAMSNMKQAINFFTR 923

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
            ++++G  + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK 
Sbjct: 924  IKELGCLIALDDFGSGLSSFGYLKALPVDIVKIDGLFVRDIDVNEMDYVMVRSINDLAKQ 983

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +    +A+ +     + +L  +G +Y Q   +  P     +++ L++ 
Sbjct: 984  MGKHTVAEFVENTQVLDKLIELGVNYAQGYVIGRPKPLAELVEELRQE 1031


>gi|292670659|ref|ZP_06604085.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647686|gb|EFF65658.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 563

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/555 (21%), Positives = 226/555 (40%), Gaps = 26/555 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D  +  D   D     P      GL + ++        P ++I DR     
Sbjct: 20  FDLMKNTTSDFTFMMDPAADIFLAAPAFVQTYGLPAETLVHVADVLEPLVYIQDRKPLEA 79

Query: 467 ILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  S   +   R R Q +FR+R A   F W+ ++ R     +G    ++G  + +  +  
Sbjct: 80  LFSSLDHLTEGRDR-QLDFRMRDAKGDFSWLRLKGRLGFAGDGTPNLFVGTISQLARRSA 138

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +          D++TG+ NR  F++ L T L  +         +++  ID ++ +N+   
Sbjct: 139 A----------DSVTGLLNRYQFIEDLGTALRTARETGGGGGLLVM-GIDNFRTVNEAFN 187

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L  L+ RI + +     L RL G+ FG+I     +   + +F   +++  A P
Sbjct: 188 HEVGDIILRQLSERILQNIPRKLSLYRLDGDEFGLIYPD-ADEEMLKEFFARVQREFAHP 246

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                R+  VT S G   +  S      + K A+ A+  AK  G N +  F    +    
Sbjct: 247 QVYDGRQYIVTVSAGMVFYPQSARDPLVLHKYAQAALDAAKAGGKNRINEFSKEVYNRWL 306

Query: 705 VMI---KEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +   ++ L           L + P +   D+ +VG E L++W + K   ++  EF+ I
Sbjct: 307 RSLTIQEQILQDVKAGCRNFELYFQPQVAGDDQHLVGAETLLRWKNNKGRMVAPMEFIRI 366

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   I  +  ++ E+  R    WR Q   P   + IN++ + + D  L E ++  + +
Sbjct: 367 LEETKTIVPVGRWIFEQALRVCKEWRKQI--PNFCMSINMSYEQIKDLSLLEFVEDCLRR 424

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  + L  +ES ++ + +         R+ GI + +DDFGT  S LS L  +  D 
Sbjct: 425 HDMPADAVVLELTESKIVSDLKFVNAQFDAFRRRGIKVAMDDFGTGYSSLSSLKNLNCDI 484

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC--DYIQ 936
           VK + + +    E      ++   + +  +I  T   + +  + +   L ++ C  D IQ
Sbjct: 485 VKIDRAFVMRILENHFDRKLVEYTVDLCHSIGMTTCIEGVERQDEYDCLVKI-CKTDTIQ 543

Query: 937 DSHVASPLGFNSILK 951
                 P   +   +
Sbjct: 544 GYLFGRPEPQDIFEQ 558


>gi|262404116|ref|ZP_06080671.1| Rtn protein [Vibrio sp. RC586]
 gi|262349148|gb|EEY98286.1| Rtn protein [Vibrio sp. RC586]
          Length = 625

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/442 (25%), Positives = 201/442 (45%), Gaps = 7/442 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  + + +  +   D LT +PNR +  +RL   L   A D     T++   +  
Sbjct: 186 LKEIEQRTVAEDYVEFHRHFDPLTKLPNRITLTERLQPQLKSIADDQQ--ITLIYFTLRN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +ND  G  VGD +L +L +R+   L    +LAR+ G+ F +    + +  +      
Sbjct: 244 FKSVNDSYGYQVGDQILSALCQRLSHNLPKNWLLARIVGSEFVLTAWHKRSKTETQKVID 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + ++   P N     IT+   +G A        S   ++ A  AM  AK  G       
Sbjct: 304 RVVQACIQPFNTNNLNITLQCHLGVALAPMDATDSLSFIQRASSAMSLAKKEGTQISFFN 363

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                   +R+ ++  L  A+   EL + + PI+      +I+G EAL++W +P  GN++
Sbjct: 364 LAAQKATEERLQLESHLLHALRLGELAIHFQPIVDLKHHGKIIGAEALLRWHNPHLGNVT 423

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  I  F+L +  ++   W       P  I INI+     ++   E 
Sbjct: 424 PDRFIPLAESNGQIIEIGYFVLHQALKNAAEWCKLT-TAPFKIAINISPIQFREHHFVEY 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++     P  I+L  +E +++ +   ++  L +L++ GIS++LDDFGT  S LSYL
Sbjct: 483 LKDLMTLYQLPPGCIELELTEGILLEDEHYAQSALAQLQQQGISISLDDFGTGYSSLSYL 542

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + S ++     E    + R+II MA+ ++  +IA+ +        +   G
Sbjct: 543 QKYSFDTLKIDRSFISQLEYNEPNRELTRAIIAMARKLKMAVIAEGVEKTYQENFVRTEG 602

Query: 932 CDYIQDSHVASPLGFNSILKLL 953
           C + Q       +      +LL
Sbjct: 603 CSFAQGYLYGKAMPAEEFTQLL 624


>gi|15888045|ref|NP_353726.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|15155665|gb|AAK86511.1| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 450

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/434 (24%), Positives = 222/434 (51%), Gaps = 10/434 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D LTG+ NR    D++  +L    + D    TV + +ID +K IND+ G+  
Sbjct: 15  ELQAMAYSDPLTGLGNRYRLRDKI-RMLASERSSDPAPFTVGIANIDGFKPINDLFGVQA 73

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++L  +  R+   +    I+ R  G+ F  +L      +        ++  ++ P +L
Sbjct: 74  GDEILCQVAHRLKACIPDGAIVTRHDGDEFAFVLPLIFERIGAERIGNMIKDVLSAPYDL 133

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-- 705
            +R + +++S GFA +  +     ++LK+AE A+Y +K RG   +  +     +  +   
Sbjct: 134 GDRNVRLSSSFGFAIYPFAGDEYEDLLKSAETALYRSKRRGRGQITVYSREIAQEMKRAT 193

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ L  A+    + + + PI+RL + +++G EAL +W+ P  G +S + F+ +AEE  
Sbjct: 194 QLEQALRNAIITDAIDVHFQPIVRLEEAKVIGFEALARWNDPDLGFVSPAVFVPLAEERG 253

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I A++  +L + A   + W  +     +F+  N++S  L+D    + + +++S+    P
Sbjct: 254 FIDALSEALLRKAAEAALFWPRE-----LFLSFNLSSAQLMDPSTSDNILSILSRVGLDP 308

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +E+ VM + + ++ ++  L+  G+ ++LDDFGT  S L  L    FD VK + 
Sbjct: 309 HRLELEITETAVMTSADTAQRIISELQSAGVRISLDDFGTGQSSLGRLRDFTFDKVKIDR 368

Query: 886 SLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + ++  +  R    I+++I+ M + ++  ++A+ I   ++ ++L  +GC   Q      P
Sbjct: 369 AFVSRISSDRPSEHIIKAIVAMCEGLDLEVVAEGIEERVEEEKLRALGCAMGQGYFYGRP 428

Query: 944 LGFNSILKLLKERF 957
           +   +  + L E +
Sbjct: 429 VDAAATQRYLHENY 442


>gi|323494794|ref|ZP_08099893.1| hypothetical protein VIBR0546_06647 [Vibrio brasiliensis LMG 20546]
 gi|323310987|gb|EGA64152.1| hypothetical protein VIBR0546_06647 [Vibrio brasiliensis LMG 20546]
          Length = 583

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 198/439 (45%), Gaps = 11/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E KK        +  D LT +PNR+SF   +  +       D +   V+ + ++  KK+N
Sbjct: 151 EAKKQSALYKRASLTDYLTYLPNRKSFFKEINDL----QASDEMDYAVIQVGLNNLKKVN 206

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR-FGIILISENNSLKIADFAIAMRK 639
           D LG   GD++L    R +  L+     L RL G+    +I   + N  ++      +  
Sbjct: 207 DDLGYGYGDELLHQFARHVKRLIGRKGKLFRLGGDELMVLISCPQGNLDEVHQTIARLDA 266

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                  +      +    G A  + ++       KN + A+  AK    N V+ +    
Sbjct: 267 HYDTVCKIHNTSHRLRYIGGCALLSDAQNNLKLWGKNVDAAISRAKQNDANSVQWYDDQL 326

Query: 700 FRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I+ +L  A++N +L+LVY P + +  ++I+G EALI+W HP  G +  ++F
Sbjct: 327 MDDTIRAHQIEIELKGAIDNKQLFLVYQPKVDIEAKKIIGAEALIRWQHPDLGLVVPNDF 386

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    I  I  ++ E+      SW D     P  I IN++S     +++   +  L
Sbjct: 387 ISVAERTAQIIPIGRWVFEQAIIQAKSWLDAGTRVP--ISINVSSVQFAHDDIFPYITEL 444

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++K     + +++  +E+ +M    +      +L+ +G+++ +DDFG   S L+YL  +P
Sbjct: 445 LNKHNVPANCLQIEITETAMMDKHSQVAQTCKQLQDLGMTIAIDDFGVAYSSLNYLKRLP 504

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    E      I+R+II M +N+  T+IA+ +  E  ++ L R  C   
Sbjct: 505 IDVIKIDKSFIDDCVEDVTDHMIVRTIIQMGQNLSKTVIAEGVENEEQLELLRREKCHQF 564

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + P+      +LL 
Sbjct: 565 QGYLFSKPISAEQFTELLS 583


>gi|319788607|ref|YP_004148082.1| diguanylate cyclase/phosphodiesterase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317467119|gb|ADV28851.1| diguanylate cyclase/phosphodiesterase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 651

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/441 (24%), Positives = 208/441 (47%), Gaps = 10/441 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A  D+LT +PNR++F   L+   + +      R  V +ID+D +K IND+ 
Sbjct: 213 RLGAENLRLANLDSLTRLPNRRAFFTALSRACERADQR-RTRLAVGIIDLDGFKPINDLH 271

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L  + +R+ +L      LARL G+ F +I     +      FA  +   +  
Sbjct: 272 GHAAGDRLLKQVGKRLAQLADAHVHLARLGGDEFAMIAEDLGDDEAYVAFARQVCARLRE 331

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
           P  L +  + VTA++G   +      + ++ + A+ A+YH K      V  F        
Sbjct: 332 PFQLQDLSLHVTATMGLVLYPDLAGHAEDLYERADYALYHGKREHRGGVSLFSADHHRRI 391

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I++ L  A   ++L + + PI+ +     +  EAL +W HPK G +  ++F+ +A
Sbjct: 392 QHEAAIEQALRNADLEAQLTVAFQPIMCVASGAPLAFEALARWCHPKLGQVPPADFIPVA 451

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   ++  +   +L +   + + W +        +  N++  DL   E   G+  LI  +
Sbjct: 452 ERTGLVHRVTRILLAKALAEAVHWPEAVG-----LSFNLSMHDLGSAEDLSGLLELIRAS 506

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+RI +  +E+ ++ +  + +   G LR +G  ++LDDFGT  S LS L  +P   +
Sbjct: 507 GVHPARIDMEITETAILNDTAQMQRAAGLLRGLGCGVSLDDFGTGFSSLSQLLALPLTKI 566

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +TG  +K   + I+RS++ +++++E   + + +    ++  L  +G + +Q   
Sbjct: 567 KIDRRFVTGIQDKPTSMKIVRSLLALSRDMELGCVIEGVETADELAVLQELGGNLMQGYL 626

Query: 940 VASPLGFNSILKLLKERFPLV 960
            A P+   ++   L+   P +
Sbjct: 627 FARPMPPEAVAGWLRHSLPAL 647


>gi|218532738|ref|YP_002423554.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218525041|gb|ACK85626.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 514

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/500 (22%), Positives = 224/500 (44%), Gaps = 12/500 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               +  R +       R  R + E  + A   + + +  ++     ++ ++        
Sbjct: 14  PERDERIRRLERRVARERSARAEAESLLEAKSRELYALNQQLSR-FAADLELRVDERTR- 71

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKY 576
              E   + E  +  A +D LTG+ NR  F   L   +  +     + R  ++++D+D++
Sbjct: 72  ---ELALARERAVALAERDQLTGLANRTRFARVLGAAVGRAGRGTGSERFALLLLDLDRF 128

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD  L  + RR+   +    + ARL G+ F  I+        +A    A
Sbjct: 129 KEINDSLGHEAGDVFLQHVARRLSGTVGQGAVTARLGGDEFAAIVP-LGPRSDLARLGEA 187

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESF 695
           +   I  P+    R +  +AS+G A +     T S++ + A++A+Y +K  R        
Sbjct: 188 VVAEIRRPVAYRGRMLEASASLGIAVFPDDAATGSDLQRFADIALYRSKATRAAWTRFDP 247

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           R+     +R  +  DL  A+ +  +   + PI+  +    VG EAL +W HP+ G ++ +
Sbjct: 248 RMGREIEERQALGADLGAAIRSGAIEPWFQPIVDGVTRRPVGAEALARWVHPQLGFLAPA 307

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +++ +   M+ R       W     +    + +N++        + + + 
Sbjct: 308 AFLGLAEERGLMRDLFAGMMRRACPPARDWVRAGAIR--TLSVNLSPSQFKLGSVADDVI 365

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+ +  + P  + +  +E V++ + +R+R+ L RL   G+ + LDDFG   S + YL  
Sbjct: 366 ALLDELDFPPEALTVEITEEVLLNDLDRARVQLERLAAHGVRIALDDFGVGYSNIGYLRR 425

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P  T+K +  L     ++  A  IL +I+ +A+ ++  ++A+ +        L+ +GC 
Sbjct: 426 LPIQTLKLDRLLTVDVAQEHEARCILGAIVQIARALDLRLVAEGVEDPGQALWLSHLGCR 485

Query: 934 YIQDSHVASPLGFNSILKLL 953
           ++Q      P+   +    L
Sbjct: 486 HLQGYLFGRPMPAEAFAGYL 505


>gi|218708152|ref|YP_002415773.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
 gi|218321171|emb|CAV17121.1| sensory box/GGDEF family protein [Vibrio splendidus LGP32]
          Length = 1044

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 114/588 (19%), Positives = 225/588 (38%), Gaps = 31/588 (5%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----- 438
                + V +       +F       L       ++   D+             +L     
Sbjct: 469  LFEARDVTSRKLAENKLFQREANLKLYYDKQPVMMITLDVNNRIQQVNQFAEELLGYPLD 528

Query: 439  ---GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
               G      +      +P          R IL       RG  + +   R AD +  W+
Sbjct: 529  LLLGHRPREFYVDENAMIP----------RHILLQPQHKIRGVWRRDIEYRHADGRTIWI 578

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
               IRP+ +S G +L  +G   DITE ++  E +   A  D LT   NR  F   L   L
Sbjct: 579  RENIRPLVDS-GQLL-IVG--EDITETRELSEKLEYQARYDLLTDTFNRNHFEQELQKAL 634

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                +       ++ +D+D+ K +ND  G   GD  ++     I ++L +  +LAR+ G+
Sbjct: 635  KEVESHMRTH-AMLFLDLDQLKVLNDTAGHEAGDAAILFSANLIEDVLPYNAVLARMGGD 693

Query: 616  RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
             F +++        +      +      P    +  + +T SIG      +  +S  +  
Sbjct: 694  EFAVLIKDCTERDAVNVCHSIISMMSENPFLWGDIHLNLTCSIGIRLIDHTAASSQMVHA 753

Query: 676  NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIR-L 730
             A+ A + AK  G N    + +      R  ++ +    +  A+ N  L L    I+   
Sbjct: 754  QADAACHAAKEEGRNRYHLYHLDDEDLRRRHLEMECVNLVHEALANDRLELFAQRILGLE 813

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             +   +  E L++  + +   IS   FM  +E   +   I+  ++ +    +       +
Sbjct: 814  ENSNKMHFEILVRIKNVQGEYISPGIFMPASERYNIAHLIDRQVVSQTLNWLEQRPHLVD 873

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
               +   IN++   + + E  E +   ++ +     +I L  +E+  M N +++     R
Sbjct: 874  DLGM-CSINLSGHSMGNREFVEFLIESLANSSVPCHKICLEITETAAMSNMKQAINFFTR 932

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
            ++++G  + LDDFG+  S   YL  +P D VK +G  +           ++RSI  +AK 
Sbjct: 933  IKELGCLIALDDFGSGLSSFGYLKALPVDIVKIDGLFVRDIDVNEMDYVMVRSINDLAKQ 992

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +    +A+ +     + +L  +G +Y Q   +  P     +++ L++ 
Sbjct: 993  MGKHTVAEFVENTQVLDKLIELGVNYAQGYVIGRPKPLAELVEELRQE 1040


>gi|322833006|ref|YP_004213033.1| diguanylate cyclase/phosphodiesterase [Rahnella sp. Y9602]
 gi|321168207|gb|ADW73906.1| diguanylate cyclase/phosphodiesterase [Rahnella sp. Y9602]
          Length = 516

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/452 (22%), Positives = 207/452 (45%), Gaps = 18/452 (3%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  +I  + ++ +        D +TG+PN       L + +     ++     V  I+I
Sbjct: 72  AMEKEIARRMEAEKNFHWVECHDPVTGLPN----TIILNSTIAQYNHENKSSFGVFTIEI 127

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           ++ K IND+ G    D++   +  R+  +      + +L+ + F ++  +  +   +   
Sbjct: 128 NRLKDINDIFGHDYHDEIFKIVAERLLNIFP--GCVYKLAADDFLVLRPNI-DKTDLTSL 184

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +  + +S+  P+NL      ++A+IG +          ++++ ++ AM+ AK  G   + 
Sbjct: 185 SGRVMRSLCSPVNLDGFTFNISANIGISRSPEGSCDLKKVIQQSDCAMHVAKKAGREQIR 244

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +F  S   S      ++ D   A++N      Y P++ L  E+I+G EAL +W+      
Sbjct: 245 AFSASMEESLLSMAQLERDFKSALKNKVFVSHYQPLVDLKSEKIIGFEALARWEISAGKF 304

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I  S+F+ +AE+   I  +  ++L     + + W          +  N++   L D  L 
Sbjct: 305 IPPSKFIALAEDTGAITELTEYLLREACLEALKWPS-----DKRLSFNLSPLLLCDKNLK 359

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++    + P ++++  +ES +  +   +R  L RLR  G+ + LDDFGT  S LS
Sbjct: 360 SRIIGILDDVGFPPEQLEIEVTESALFSDRHLARYTLKRLRDAGVKIALDDFGTGYSSLS 419

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L   PFDT+K + S +    + EK+  I+ SI+ +A  +   ++A+ I  +  +  L  
Sbjct: 420 QLCDFPFDTLKIDKSFIDTFQTNEKQNKIVCSILSLANALNVKVVAEGIEYKSQLIILQE 479

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           +GCD  Q   +  P+   +I K +K   PL +
Sbjct: 480 LGCDIGQGYFLGKPVPAANIHKSIKS--PLTE 509


>gi|254975248|ref|ZP_05271720.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255092638|ref|ZP_05322116.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314375|ref|ZP_05355958.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517054|ref|ZP_05384730.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650157|ref|ZP_05397059.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260683281|ref|YP_003214566.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686877|ref|YP_003218010.1| putative signaling protein [Clostridium difficile R20291]
 gi|306520152|ref|ZP_07406499.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260209444|emb|CBA62946.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212893|emb|CBE04129.1| putative signaling protein [Clostridium difficile R20291]
          Length = 514

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/446 (23%), Positives = 196/446 (43%), Gaps = 9/446 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + I   I ++      +   A+ DNLTG  N  +    +     +   +  ++  ++ I
Sbjct: 67  MMLIFYIIYDKLNFKIKLQKIAYTDNLTG-AN--TIDKFVIDANKILCKNTQVKYALLYI 123

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DIDK+K IND+ G  VG+++L +LT+ I   +   ++ AR+S + F II+        I 
Sbjct: 124 DIDKFKYINDLFGYEVGNEILRNLTKIIKSNIFEEEMFARISADNFIIIMKYI-EEEDIT 182

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + + + +  N  E +  +  S G           + ++  A +    AK    + 
Sbjct: 183 KRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHKSS 242

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +             ++  +  ++EN E  +   P I L   EI G EAL++W  P  
Sbjct: 243 YAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIDLNTGEIQGSEALVRWKRPDK 302

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I  +EF+   E    +  ++L++LE +   +  W D     P+ + +N++   L  N 
Sbjct: 303 GLIPPNEFIPFFERNGFVINLDLYVLEEVCIYLRKWIDAGIN-PVTVSVNVSRIHLYCNN 361

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E  + +I K       I+L  +ES++  N +    ++  L+KIG  +++DDFG+  S 
Sbjct: 362 FIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYSS 421

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L  IP D +K +   +  +  +++   I+  +I MAK +   +I++ +  E   K L
Sbjct: 422 LNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKLL 481

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             + CD  Q      P+       L+
Sbjct: 482 KEVKCDMAQGYLFGKPMPIEEFEHLI 507


>gi|220905545|ref|YP_002480857.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869844|gb|ACL50179.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 749

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/607 (20%), Positives = 243/607 (40%), Gaps = 24/607 (3%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE---RQSLAVL 412
           ++               G  V +V +     ++        ++ +        R    V 
Sbjct: 123 LSYRWTRITAFPVRQPGGHFVYLVCVQDVDDLKRAATIVRENELLQQQKLDNLRYKAVVD 182

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
            +  +V++W    D    +P I  +L G   G +   +      ++  D   F T L   
Sbjct: 183 HTRTLVFEWR-NNDLTYISPRIGELLAGNYDGRIPFDVWREDNVLYSGDSAAFDTCLSRL 241

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGIL 530
               R   +   R+R  D QF W  +    +++ + G+  RYIG  ND+    ++ + + 
Sbjct: 242 ALGIRSG-EMTLRLRRRDGQFIWCKVTYTCLADDSPGE--RYIGTINDVDAATRTEQALR 298

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG  N Q+F +++  +L            V+  D+  +K IN+   +  G+ 
Sbjct: 299 LRAEHDPLTGAYNTQTFFEKVEALL---REYPTEPYAVLRFDVAGFKAINEAFSLEEGNR 355

Query: 591 VLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           +L ++ R I + +        RL+ + F + +    +  +I +F  ++ + +        
Sbjct: 356 LLRAIARLIRQRINTQCEAYARLTADVFAVCITG--DINRIKNFIHSLSRRLEHY----S 409

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
               V    G     + +  +  +   A LA    K     +   +         D   I
Sbjct: 410 DTFRVKLFFGVCQVENRRTPAHVLCDWAYLAQKTIKGSDLANYAFYDNALRQRLHDESYI 469

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            + +  A+E  +  L   P + L    IVG EAL++W HP  G I    F+ + E    I
Sbjct: 470 TDQMYRALEQKQFKLYLQPKVELSSGRIVGAEALVRWQHPHDGLILPGRFVPLFERNGFI 529

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             ++ ++ +   +++  W D+    P+ + +N++     D  L + +  L+ K       
Sbjct: 530 VRLDEYIWDLTCQNLRMWLDK-GYKPMPVSVNMSRLHFNDGALTKKLVQLVDKYRLPRHL 588

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES    N +    ++  L+  G   ++DDFGT  S LS L  +PF+ VK + + 
Sbjct: 589 LELELTESAFFKNEKALIHIMCELQAEGFIFSMDDFGTGYSSLSTLRALPFNIVKLDRAF 648

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++     E+   + R+ I +AK++   I+A+ +      + L   GC+  Q  + + PL 
Sbjct: 649 ISDGTDNERGQIVARNTIALAKDLHMQIVAEGVETLDQARFLLSCGCNCAQGFYYSQPLD 708

Query: 946 FNSILKL 952
            ++   L
Sbjct: 709 QDAFEVL 715



 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGR-----LQYEFRVRAADNQFHWMIIRIRPMSN 504
                 +H +D +      D        +        + R +  D  + W  I   P+  
Sbjct: 78  EALTRLVHPDDHNALLRFWDPLSRQDLEKNGLPFSTLDVRRKCHDLSYRWTRITAFPVRQ 137

Query: 505 SNGDILRYIGIANDITEQKKS 525
             G  +  + +  D+ + K++
Sbjct: 138 PGGHFVYLVCV-QDVDDLKRA 157


>gi|330885472|gb|EGH19621.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 509

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +         V V+D+D +K +ND+ 
Sbjct: 65  QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMQEA-LAQRTGLAVGVLDLDGFKPVNDLY 123

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 124 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFAVVIKGDISNDALLAFGKHLCELMHE 183

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 184 SFELSDMPIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 243

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 244 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 303

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 304 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 358

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 359 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 418

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 419 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 478

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 479 YSPPISFEQTLVWVE 493


>gi|145221592|ref|YP_001132270.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mycobacterium gilvum PYR-GCK]
 gi|145214078|gb|ABP43482.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Mycobacterium gilvum PYR-GCK]
          Length = 872

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/554 (20%), Positives = 243/554 (43%), Gaps = 18/554 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHGPIRNWLPYIHINDRDNF 464
            +  +  +GD +   D+     +     A++   G  + ++ G     L      +R   
Sbjct: 322 YAAVMQATGDAILAVDVSGVIRSCNKAAASLFTAGQDTDALLGRSIVELAV--DAERGRM 379

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  LD  +  R+  +  E  + A D +   ++I + P+ +S   ++  +   +D+TE K 
Sbjct: 380 QEHLDDALTTRQE-VSLEMTLAAHDGRHVEVMITLSPIGDSVDLLVAVV--VHDLTEIKH 436

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   A  D LT + NR+   DRL   L  + T       ++ +D++ +K +ND  G
Sbjct: 437 AQTEIRHLASHDPLTDLANRRQLTDRL-AALARNRTSMATLVALVYVDVNHFKAVNDTYG 495

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-M 643
              GD++L+++  R+   +    ++ R+ G+ F I+L    +S         + + +   
Sbjct: 496 HDTGDELLLAVATRLRSAVSEDTLVCRIGGDEFVIVLEDVLSSAAAVAAGDRILELVQGQ 555

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P++     +  + S+G +   ++  T  E+L  A++AM+ AK         +  +    +
Sbjct: 556 PVHCGSAILQPSISMGISCLGATAHTPEELLTQADMAMFEAKKNQSQVCVLYTDAIGSRQ 615

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             +V ++ ++  A+  S+L +VY PI+        G+EAL++W       I + E + +A
Sbjct: 616 QGKVNLRTEVVEAIARSDLRMVYQPIVNCETNTTFGVEALLRWRV-GGVEIPAGEIVALA 674

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+      +  ++L R   D            + + +N++ + ++D    E + +    +
Sbjct: 675 EDAGQAARLGRWVLTRSFTDYA----SLGRDDLKLHVNVSPEQVVDCTFLEHLFSTTRDS 730

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   + L  +E    G+P+ + + L   R  G SL +DDFG + + L+ L ++P + +
Sbjct: 731 SIAADNVCLELTERAFHGDPKPAHIALRSARDHGFSLAMDDFGVEYASLTNLMHVPVNWL 790

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      E+   ++ S I +A+ ++  +IA+ +  +     L   GC   Q   
Sbjct: 791 KIDRSFIADVLDNERTQRLVHSHIAVAECMQVGLIAEGVEDQRQADWLRDAGCVLQQGFL 850

Query: 940 VASPLGFNSILKLL 953
            + PL    +   L
Sbjct: 851 YSHPLEVTDLGDYL 864


>gi|315445392|ref|YP_004078271.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
 gi|315263695|gb|ADU00437.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
          Length = 770

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 139/760 (18%), Positives = 284/760 (37%), Gaps = 78/760 (10%)

Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312
           +R  + + L+++L++ +  +  W +  A +       +   A+      +       ++R
Sbjct: 4   YRIRASVVLAATLLVLVNGFAPWGQ-AAALRVDAILQVCTAAVAVVYGLWVARRVHGVSR 62

Query: 313 IT--LASIVLYYTYFIIYHGMK--GYERAVLLIPAWILIFIWFI----------GLWMAI 358
               LA   +           +         +IP W+ + +             G+ +  
Sbjct: 63  TWRLLAVGAVAGLLVGELVWWEPTEALPVAWVIPYWLFLILALASMVVLARAGRGMSIPA 122

Query: 359 TKRLDNDIIQPALVGGLVLIVILI-------------------------GFTVIQHVLAT 393
              L +  +   L  G+      I                         G+ V Q V+  
Sbjct: 123 DGSLRHTAVITVLDAGVAAASFAILVFLGRYGAFSVSSWPHSTDPSVEIGYAVFQLVVVV 182

Query: 394 GYFSQGIFSDGER------QSLA----VLGSGDIVWDW-DIVRDR-VTTTPDIATILG-- 439
                G+    +R        LA    +  S D V  + D V +        +  +LG  
Sbjct: 183 IAAVVGMMYAADRPFRSNFLQLACGVVMAISSDRVIAYFDSVGNEGAQIWAGVGVVLGPL 242

Query: 440 ---LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWM 495
               +       IR     +   D          F+      L   + V   +      +
Sbjct: 243 LIAFSFRERTDGIRGPTDTMRPMDWAQMTLPYAGFI-GITNLLS--YHVLTGNTLDPAVV 299

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +  +       +  +G    +T++    +  +      D LTG+PNR  F  RL   
Sbjct: 300 MTTLVMVILVAARQVVAMGAQRRLTQRLYEAQRGLAHQVHHDALTGLPNRLMFAQRLEAA 359

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +       +    ++ +D+D +K++ND  G A GD++L ++  R+   ++  D LAR+ G
Sbjct: 360 V------QHGDFVLIFVDLDDFKEVNDRFGHAAGDELLCAVGERLRRHVRSEDTLARIGG 413

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSE 672
           + F I++    +  ++   A  +R ++  P  +    + V AS+G           T  +
Sbjct: 414 DEFAILIDGVRDIPEL--IADRLRVALRDPFPVHGSSLRVRASMGLVRSGGEGGLQTPDD 471

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +L+ A+++MY  K  G +    ++ S+                      L Y P++ L D
Sbjct: 472 LLRQADISMYAGKRLGKDTAVVYQPSAGVRAEFPAALREAQGGVPDGFALAYQPVVHLPD 531

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +    LEAL +W  P    I+   F+ +AE   +   ++  +L    R++          
Sbjct: 532 QTPAALEALARWTAPNGILIAPETFVAVAEASGLGATLDAMVLGLACREVKD-----AGL 586

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N+ +  L +    E +     +    PSR+ L  +E+V + +   +   + R +
Sbjct: 587 DVDIHVNVGAARLGNPTFEEQVHRTFDECGMEPSRLVLEITETVPIVDLADAAAQIERFK 646

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIET 911
            +GI + LDDFG   + L+YL  +P D VK + SL  G+  +R  A+ RS+I +  ++  
Sbjct: 647 ALGIRIALDDFGAGYNSLTYLHALPVDIVKLDRSLAVGADPERDLALYRSVIGLCTDLGM 706

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++A+ I  ++    +   GC + Q      P+  + + +
Sbjct: 707 DVVAEGIETQLQADTVYAAGCAFAQGHLFGKPVAISELTR 746


>gi|146280275|ref|YP_001170431.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025]
 gi|145558516|gb|ABP73126.1| diguanylate phosphodiesterase [Rhodobacter sphaeroides ATCC 17025]
          Length = 936

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 209/456 (45%), Gaps = 22/456 (4%)

Query: 513 IGIANDITEQKKSLEGILCNA------FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +  A+D+ E   +       A        D LTG+ NR      L   L  +        
Sbjct: 478 LACAHDLGEAITAEMAQRTRAALARLRHYDPLTGLANRSF----LQECLANATLAGGPDV 533

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ ID+D++K +ND +G  VGD +L+ +   +   ++  D++ RL G+ F ++     +
Sbjct: 534 ALLFIDLDRFKAVNDSMGHGVGDGLLIEVAHSLVASVRPEDLVVRLGGDEFVVLCHGL-D 592

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +   A  +R+ +  P  +  R+  ++ASIG A   S      ++++ A++AMY AK 
Sbjct: 593 RAAVTGLAERLRQVLDQPFEVTGRKCHISASIGIAMSDSIGE--LDLVRAADIAMYAAKK 650

Query: 687 RGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALI 742
            GGN  E FR S     +  V +  DL  A+EN + +L Y PI  L      +VG EAL+
Sbjct: 651 NGGNRGELFRPSLYEETTQLVELDNDLRNALENGQFHLAYQPIFALAPGTERLVGFEALL 710

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP +G++    F+ +AE+L  I  +  + L    R + ++R       + I +N++ 
Sbjct: 711 RWEHPHYGSLQPGVFIPMAEKLGHIHVLGDWALRNALRQVQAFRSAGPELDLKINVNVSP 770

Query: 803 KDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             L        +  ++ +        + L  +E+ +    E     LG +R +G+ + +D
Sbjct: 771 LQLAKPGFAARLTDMLGQMPDLPSHALCLEITETCLSD--EAVSEALGAIRALGVQVAID 828

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+ L  +P D VK + + +  S+   +      ++  +   ++  ++ + + 
Sbjct: 829 DFGTGFSSLACLRRLPADIVKLDRAFLKNSSAEPQDDRFFAAVNSLIHAVDLKVVQEGVE 888

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               I  +   G D+ Q  H+A PL   + L L+  
Sbjct: 889 TPAQIDFIRATGADFAQGFHLARPLSIPAALDLISA 924


>gi|160898477|ref|YP_001564059.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160364061|gb|ABX35674.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
          Length = 758

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/443 (23%), Positives = 208/443 (46%), Gaps = 14/443 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  LE +  +A+ D L  +PNR  F++++   +     D      + ++DID +   NDV
Sbjct: 319 RGLLERLHQSAYFDPLVCLPNRAHFVEKVDECVWRGTRDH----VLALVDIDDFSATNDV 374

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L ++ RR+   L    +LAR+  + FGI+  ++            +     
Sbjct: 375 MGHRFGDRLLEAMARRLASALPAGVLLARVGSDTFGILGPTD------EVALAQLLDCAR 428

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            P+ +      V+ + G+      +   ++++K+A +A+  AK      +  +  ++   
Sbjct: 429 QPLAVDGVPHKVSLTCGYVYLPHERQAGTDLVKDATIALKRAKRDHRGQLLEYSEQMGME 488

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             DR ++  DL  A++ ++L+LVY P + L    +VGLEAL++W       +    F+ +
Sbjct: 489 ARDRALLLSDLRAAIDGAQLFLVYQPQVDLETHALVGLEALLRWRRQDGSFVPPDRFIPV 548

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  +  ++L    R +    D     P  + +N+++  L D    + +   +++
Sbjct: 549 AEHSGLIVPLGQWVLATACRTMRELLDA-GRAPRRMAVNVSTVQLQDPGFLQTVSNALAE 607

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                ++++L  +ESV +   +  +  L  LR +G+++ +DDFGT  S LSYL  +P D 
Sbjct: 608 HGLQGAQLELEITESVAVLPTQLLQATLSALRTLGVTIAIDDFGTGYSSLSYLERLPLDR 667

Query: 881 VKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +    E + A I   I  + + +   ++A+ I      + L  MGC   Q  H
Sbjct: 668 IKIDRSFVRQLGESQEARIAEMIAQLGRKLGLQVLAEGIEDASAWQALRAMGCQEGQGYH 727

Query: 940 VASPLGFNSILKLLKERFPLVKN 962
           VA P+    +L  L +R  + + 
Sbjct: 728 VARPMDKAQLLGWLGQRNEVPQR 750


>gi|84386313|ref|ZP_00989341.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84378737|gb|EAP95592.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 884

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 100/431 (23%), Positives = 195/431 (45%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+ F+D             N + T+ ++ ID+++ IND
Sbjct: 415 LKASFQALQSQLTYDSLTKLYSREGFID------AAKKNPANEKGTLYLVGIDRFRDIND 468

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L+    R+   L    +LAR  G+ F I   +   S +       + ++ 
Sbjct: 469 SLGHYNGDQLLIIAAARLRGTLPSEYLLARTGGDEFAIYAPNVIQSEEAQLLTNRLLQTF 528

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    + +  S+G    + +    + +L+++ +A+ +AK    +           
Sbjct: 529 ASPFSMESESVVIKVSMGVVGVS-NVHDIALLLRSSSIALSNAKQDKASVSIYSPEMGKA 587

Query: 702 SDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S     +   +  A+E  +    Y PII L     +G EAL +W     G IS  EF+ +
Sbjct: 588 SRHRTKMLARMNRAIELQQFEPFYQPIIDLESGSTIGAEALARWI-ADEGVISPLEFIPL 646

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I  I   +L +  RD     +         I +N++   L ++   E ++  + 
Sbjct: 647 AEESGLIYDIGKQILHKSCRDTAIAIESGKWSKDFSIHVNLSVDQLSESGFVEQVKGTLR 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T    S + L  +ES ++ N       +  L+ +GIS+ +DDFGT  S L+YL  +PFD
Sbjct: 707 DTKLPASNLTLEITESRIVDNDPAIIDNMLTLKALGISIAIDDFGTGYSSLAYLHKLPFD 766

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++   ++    +I+ +I+ + K  + +++A+ +  +   + L ++ C   Q 
Sbjct: 767 CLKIDRSFVSKLEKENLDSSIVAAIVNITKGFKVSLVAEGVETQQQAELLKQLKCPLAQG 826

Query: 938 SHVASPLGFNS 948
              + P+ F+ 
Sbjct: 827 FLYSRPVPFDQ 837


>gi|315446673|ref|YP_004079552.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Mycobacterium sp. Spyr1]
 gi|315264976|gb|ADU01718.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Mycobacterium sp. Spyr1]
          Length = 872

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/556 (19%), Positives = 240/556 (43%), Gaps = 18/556 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHGPIRNWLPYIHINDRDNF 464
            +  +  +GD +   D+     +      ++   G  + ++ G     L      +R   
Sbjct: 326 YAAVMQATGDAILAVDVSGVIRSCNKAAVSLFSTGPDTDALLGRSICDLAV--DAERGRM 383

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  LD  +  R+  +  E  + A D +   ++I + P+ +S   ++  +   +D+TE K 
Sbjct: 384 QEQLDDALTTRQE-VSLEMTLAAHDGRHVEVMITLSPIGDSVDLLVAVV--VHDLTEIKH 440

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   I   A  D LT + NR+   DRL   L    T       ++ +D++ +K +ND  G
Sbjct: 441 AQTEIRHLASHDPLTDLANRRQLTDRL-ATLARDRTTAADLVALVYVDVNHFKAVNDTYG 499

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-M 643
              GD++L+++  R+   +    ++ R+ G+ F ++L    +S         + + +   
Sbjct: 500 HDTGDELLLAVATRLRSAVDEDTLVCRIGGDEFVVVLEDVPSSAAAVASGDRILELVQGQ 559

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P++     +  + S+G +   ++  T  E+L  A++AM+ AK         +  +    +
Sbjct: 560 PVHCGSAVLQPSISMGISCLGATAHTPEELLTQADMAMFEAKKNQSQVCVLYTDAIGSRQ 619

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             +V ++ ++  A+  S+L +VY PI+        G+EAL++W       I + E + +A
Sbjct: 620 QGKVNLRTEVVEAIARSDLRIVYQPIVNCETNTTFGVEALLRWRV-GGVEIPAGEIVALA 678

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+      +  ++L R   D            + + +N++ + ++D    E + +    +
Sbjct: 679 EDAGQAARLGRWVLTRSFTDYA----SLGRDDLKLHVNVSPEQVVDCTFLEHLFSTTRDS 734

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   + L  +E    G+P+ + + L   R  G SL +DDFG + + L+ L ++P + +
Sbjct: 735 SIAADNVCLELTERAFYGDPKPAHIALRSARDHGFSLAMDDFGVEYASLTNLMHVPVNWL 794

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +      E+   ++ S I +A+ ++  +IA+ +        L   GC   Q   
Sbjct: 795 KIDRSFIADVLDNERTQRLVHSQIAVAECMQVGLIAEGVESRRQADWLRDAGCVLQQGFL 854

Query: 940 VASPLGFNSILKLLKE 955
            + PL    +   L  
Sbjct: 855 YSHPLEVTDLGGYLDS 870


>gi|120405592|ref|YP_955421.1| diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958410|gb|ABM15415.1| diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 772

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 218/457 (47%), Gaps = 28/457 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ L      A +D LT + N++ F DRL   L LS+ + +    V+ +D+D +K +N
Sbjct: 315 ENRQLLRAAAEQALRDPLTELANQRLFYDRLAHALTLSSREGH-SVAVVSLDLDDFKLVN 373

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G    D +LV + +RI + ++  D +AR+ G+ F ++L  E++  K+   A  +  +
Sbjct: 374 DSVGHPEADSLLVRVGQRIADCVRAGDTVARIQGDEFALLLEGEHDDSKL--IAERVVDA 431

Query: 641 IAMPINLLEREITVTASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESF--- 695
              P  L    I +  S+G A+ +  +       M+  AE AM  AK    + V  F   
Sbjct: 432 FDEPFVLHGEHILLRPSVGVAAASPGEAEVAPETMVMRAETAMNVAKRSRSSRVHVFDAT 491

Query: 696 ----------------RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
                           +     + +V +  +L  A++N E ++VY PI+ L    IVG+E
Sbjct: 492 LESAAPDVVAPERGSPQNWPDGAAKVRLLGELRRAIDNGEFHMVYQPIVDLRSGFIVGVE 551

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +S   F+ +  +  +++ +   +L+ +  D   W       P+ + +N
Sbjct: 552 ALLRWPHPRLGMLSPDAFLPLVRQHGLMRPVTEVVLDNVLDDAARWMADG--VPMPVAVN 609

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + +  L D +L   +   + +       + +  +E +V+ + +    +LG+LR+ GI + 
Sbjct: 610 LFAPFLRDAQLPSALCQALERRGLPTDLLTVEITEDLVLHDFDVVTGVLGQLREQGIRVA 669

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  S LSYL  +  D +K +   +    S  +  A++R++I +  ++ + ++A+ 
Sbjct: 670 IDDFGSGFSALSYLRELRIDEIKLDRHFIATVASDPRAAAVVRAVIDLTHDLGSVVVAEG 729

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +        L   GCD  Q  +   P+    +  L++
Sbjct: 730 VEEPATAAWLRDRGCDMAQGYYFGKPIEAADVPGLVR 766


>gi|315500500|ref|YP_004089303.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
 gi|315418512|gb|ADU15152.1| diguanylate cyclase/phosphodiesterase [Asticcacaulis excentricus CB
           48]
          Length = 654

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/439 (23%), Positives = 202/439 (46%), Gaps = 13/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K        A  D LTG+PNR+SF   L   L  +   +     + +ID+D +K +ND+ 
Sbjct: 213 KHRHEAQILAHYDALTGLPNRRSFFTELDVALVGAK--NGYAFDLALIDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G ++GD +L+ + +R+  ++    ++ARL G+ F +IL  +     +  F   +  ++  
Sbjct: 271 GHSIGDALLIEVGKRLRAVVGSRGVVARLGGDEFALILNGQMPDDDLRRFGEDLCDTLRQ 330

Query: 644 PINLLEREI-TVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHR--GGNHVESFRVSS 699
              L       ++ S+GF         ++S+ML+ A+ A+Y+AK    G   +   R  +
Sbjct: 331 TYVLGGGVCANISGSVGFVHSDPGAQWSASQMLERADYALYYAKQNLRGAPIIFDRRHEN 390

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              D   + + L  +   SELY+V+ P I L  +  V  EAL +W   K G +    F+ 
Sbjct: 391 EMQDFGAVDQTLRSSDLESELYIVFQPQIDLKAQRTVSFEALARWQSEKLGPVRPDIFIR 450

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AE   +I  I L +L +    +  W        + +  N++++DL        +   + 
Sbjct: 451 AAERSGLISDITLILLRKALVAVRDWPR-----DMRVSFNLSARDLRSLPAIARICDTVK 505

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +   P RI+   +E+ ++ + +++   L  L+ +G  + LDDFG+  S   Y+  +P D
Sbjct: 506 ASGVDPKRIEFEITETAMLSDFDQALEALALLKGMGSRIALDDFGSGYSSFGYIHRLPVD 565

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +T     +  + I++++I +  N+    + + +    ++  L  +G  YIQ 
Sbjct: 566 KIKIDRSFVTQLLRHDSTVKIVKTLIDLCGNLSLDHVIEGVETAAELCRLEEIGARYIQG 625

Query: 938 SHVASPLGFNSILKLLKER 956
            + + P+   +I   L   
Sbjct: 626 YYFSQPMRAEAITAYLDAE 644


>gi|298487153|ref|ZP_07005202.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298158177|gb|EFH99248.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 960

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/439 (25%), Positives = 211/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 516 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 574

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 575 RFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 633

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 634 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHEEPADLLRDADTAMYRVKNGGRDSFA 693

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 694 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 753

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 754 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 810

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ + E++RL + +L + G+S+ LDDFG   S L
Sbjct: 811 AAEVLAMLAEQNVAPWRLCLELTEGALVADSEQARLSMKQLAEQGMSVMLDDFGAGFSSL 870

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 871 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 930

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 931 EIGATQAQGYYFSEPLPIE 949


>gi|153835680|ref|ZP_01988347.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148867696|gb|EDL66966.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 848

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 210/434 (48%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D+LT + +RQ  ++ ++  L  S        ++ +I I+K++ I
Sbjct: 414 SNLKASFKALREQLEFDSLTRLYSRQGLIE-VSETLTHSGQS-----SLYLIGINKFRDI 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +LV +  R+ + L+   ILAR+ G+ F + + + ++  +I      +++
Sbjct: 468 NDSIGHHNGDQLLVHIAERLKQQLQDEAILARIGGDEFAVFMPNTHDDEEIRSTERRLQQ 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +A P  L    + +  SIG    T +  +    L+NA +A+  AK      V  +    
Sbjct: 528 LLAAPFMLDGETVVIKISIGVVR-TQASQSMPLWLRNASIALSSAKQDSRISVCHYSPEM 586

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  +   +   ++N E    Y PII L    I G EAL +W H + G IS  +F
Sbjct: 587 ASASKFRTQMLAKIQTGIDNHEFVPFYQPIIDLESGNICGAEALARW-HSESGMISPLDF 645

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +  RD     D    P    + +N++   L      E +  
Sbjct: 646 IPIAEENGMIKAIGQQILLQACRDTRKAIDNKQWPENFQLHVNVSVHQLSSPNFVESVAK 705

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ KT  S + + L  +ES ++ +   +   L +LR++G+ + +DDFGT  S L+YL  +
Sbjct: 706 ILLKTGLSATNVTLEITESRIIDSAPTTLDNLIKLREMGLGIGIDDFGTGYSSLAYLHAL 765

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ +II + K ++  ++A+ +   +  + L  +GCD 
Sbjct: 766 PFTCLKIDRTFINRLTKENLDSSVVAAIINITKGMKANVVAEGVETAVQAQLLRSLGCDQ 825

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+    
Sbjct: 826 VQGFYYSRPMAMEE 839


>gi|163853794|ref|YP_001641837.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163665399|gb|ABY32766.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 514

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/500 (22%), Positives = 225/500 (45%), Gaps = 12/500 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               +  R +       R  R + E  + A   + + +  ++     ++ ++        
Sbjct: 14  PERDERIRRLERRVARERSARAEAESLLEAKSRELYALNQQLSR-FAADLELRVDERTR- 71

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKY 576
              E   + E  +  A +D LTG+ NR  F   L   +  +     + R  ++++D+D++
Sbjct: 72  ---ELALARERAVALAERDQLTGLANRTRFARVLGAAVGRAGRGTGSERFALLLLDLDRF 128

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD  L  + RR+   +    + ARL G+ F  I+        +A    A
Sbjct: 129 KEINDSLGHEAGDVFLQHVARRLSGTVGQGAVTARLGGDEFAAIIP-LGPRSDLARLGEA 187

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESF 695
           +   I  P+    R +  +AS+G A +     T S++ + A++A+Y +K  R        
Sbjct: 188 VVAEIRRPVAYRGRMLEASASLGIAVFPDDAATGSDLQRFADIALYRSKATRAAWTRFDP 247

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           R+     +R  +  DL  A+ +  +   + PI+  +    VG EAL +W HP+ G ++ +
Sbjct: 248 RMGREIEERQALGADLGAAIRSGAIEPWFQPIVDGVTRHPVGAEALARWVHPQLGFLAPA 307

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +++ +   M+ R       W     +    + +N++        + + + 
Sbjct: 308 AFLGLAEERGLMRDLFAGMMRRACPPARDWVRAGAIR--TLSVNLSPSQFKLGSVADDVI 365

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+++  + P  + +  +E V++ + +R+R+ L RL   G+ + LDDFG   S + YL  
Sbjct: 366 ALLAELDFPPEALTVEITEEVLLNDLDRARVQLERLAAHGVRIALDDFGVGYSNIGYLRR 425

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P  T+K +  L     ++  A  IL +I+ +A+ ++  ++A+ +        L+ +GC 
Sbjct: 426 LPIQTLKLDRLLTVDVAQEHEARCILGAIVQIARALDLRLVAEGVEDPGQALWLSHLGCR 485

Query: 934 YIQDSHVASPLGFNSILKLL 953
           ++Q      P+   +    L
Sbjct: 486 HLQGYLFGRPMPAEAFAGYL 505


>gi|289628457|ref|ZP_06461411.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649259|ref|ZP_06480602.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869951|gb|EGH04660.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 860

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 212/439 (48%), Gaps = 12/439 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL         +   +  VM ID+D
Sbjct: 416 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLKQAWQDFCLNGQ-QLIVMFIDLD 474

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       D A
Sbjct: 475 RFKMINDSLGHHCGDILLVQAAERLRSCMREGDLLARLGGDEFA-VLSIDAPLQAGTDIA 533

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 534 QRILTAFEQPFVIDDHSVFSSCSIGVVGADSRFHEEPADLLRDADTAMYRVKNGGRDSFA 593

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   E++  EALI+W  P   
Sbjct: 594 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVRTGELLAFEALIRWRMPDGR 653

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++++ML+ +   +    +  + PP  + +N +S  +     
Sbjct: 654 IVGPESFLPALEGLRLIGRLDIYMLKCVVNILAQ-PENGHWPP--VHVNCSSYSITRPAF 710

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++++   +P R+ L  +E  ++ +PE++RL + +L + G+S+ LDDFG   S L
Sbjct: 711 AAEVLAMLAEQNVAPWRLCLELTEGALVADPEQARLSMKQLAEQGMSVMLDDFGAGFSSL 770

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+    F  +K + S + G     +  AI+R+I+ MA++++  ++A+ +     ++ L 
Sbjct: 771 SYVHQYHFSGLKIDKSFIFGLASSIRSRAIVRAIVRMAESLDLNVVAEGVEDLETLELLR 830

Query: 929 RMGCDYIQDSHVASPLGFN 947
            +G    Q  + + PL   
Sbjct: 831 EIGATQAQGYYFSEPLPIE 849


>gi|206602745|gb|EDZ39226.1| Response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum sp. Group II '5-way CG']
          Length = 874

 Score =  388 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/443 (23%), Positives = 215/443 (48%), Gaps = 13/443 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  + +   A+ DN TG+ NR  FLDRL   +DL     +    ++V+ I++ + + 
Sbjct: 431 EAVEKQKQLDYLAYHDNATGLANRSLFLDRLRQSMDLPKAL-SPLTAIVVLSIERMQFVY 489

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI-AMRK 639
           D LG   G++++   + R+  L+   + + R+  N F I L    +  +I  F    +  
Sbjct: 490 DTLGRIAGEELIALYSARLSSLVLNVNRIGRIGDNLFAISLNIFPSVEEIVHFVQDRLLP 549

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VS 698
            ++ P  +  +E+ +   +G +        +  +L  A  A+ +A+  G  +    R ++
Sbjct: 550 HLSDPFIIGGQEVRILTRLGISLSPEDSRDAETLLSAATTALSNAQRDGETYRFYTRGMN 609

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ ++  L  A++N E  L Y P +RL +  I G+EALI+W  P  G +  S F+
Sbjct: 610 ELVRERLSLESHLLRALKNREFVLYYQPKVRLSNGSIEGVEALIRWQDPDKGMVLPSRFI 669

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              EE  +I  +  +++++   D+  W  +    P  + +N++S  L   +  E +  L 
Sbjct: 670 PTLEETGLILPVGEWVVQQALSDLSGWIAKGLSVP-RVSVNVSSLQLRHRDFLESLVRLW 728

Query: 819 ---SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +       +++  +ES+++ +   +   L  +R  G+++++DDFGT  S LSYL  
Sbjct: 729 GPEERAGL----LEIEITESLILDDVPGTIATLEEIRSRGMTVSIDDFGTGYSSLSYLAS 784

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P +T+K + S +   G   + ++I+ +II +A ++  +++A+ +  E  +  L  +GCD
Sbjct: 785 LPVNTLKIDQSFVAQLGDRPESLSIVSAIISLAHSLNLSVVAEGVEKESQLSMLKNLGCD 844

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
            IQ   ++  L  +     L+  
Sbjct: 845 AIQGFLISEALPADLFEAFLQNE 867


>gi|330911283|gb|EGH39793.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli AA86]
          Length = 799

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 227/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 298 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 342

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 343 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 400

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 401 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 455

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 456 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 512

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 513 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 572

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AE +  I+ I  +++    R +  WR Q    P  
Sbjct: 573 YGIEALARWYDPLHGHVPPSRFIPLAEGIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 631

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 632 LSVNLSALHFRSNQLPNQVSDAMHTWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 691

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 692 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 752 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 797



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 118 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 177

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 178 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 232

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 233 DVLAHLQNLVMTFSDITEERQIRQ 256



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 17  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 75  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQTRQL 138


>gi|307305052|ref|ZP_07584802.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|306912454|gb|EFN42878.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 467

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/473 (23%), Positives = 201/473 (42%), Gaps = 18/473 (3%)

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           M   I  + N +  I+  + +  DIT+++     +   A  D++TG+ NRQ+F ++L   
Sbjct: 1   MERSISNLRNHDKVIVGTVVVLRDITQEELLKRQLQKRANFDSITGLLNRQAFDEQLPQF 60

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
              + T       V  +D++++K IND  G   GD +L  + + +   L   ++LARL G
Sbjct: 61  AASAKT-----IAVCYLDLEQFKLINDSCGHTAGDRMLAMVAKAMQACLGPQELLARLGG 115

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + FG+++ + +           + +     +N       V  SIG A   +  I + E+L
Sbjct: 116 DEFGLVICNRSALSVAQLLKQMIAQVSLQVLNDKNCNYKVGLSIGVAFGRAPYIDAQELL 175

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRL 730
           K+A++A   AK +G N +  +                   +  A+E +EL L Y PI  L
Sbjct: 176 KDADIACIAAKAKGANQIHFYDDKDKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGL 235

Query: 731 MDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               +   +E L++   P    ++ ++F+  AE   ++  I+  ++ +    +       
Sbjct: 236 GSGPQRQRMEILLRIQEPCGRILAPAQFIAAAERFKLMPDIDKEVIRKAFLWLSLHP--V 293

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
             P   I IN++   L    + E +             I    +E+  + N  R   +L 
Sbjct: 294 LWPDHCISINLSGNSLGAEGMVEYIAQQQHIFDIPSQCICFEITETTAIQNRNRGMEMLK 353

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           +LRK+G S  LDDFG+  +   YL  +P D VK +G  +       K  AI++SI  + +
Sbjct: 354 QLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCR 413

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF----NSILKLLKER 956
            +    +A+ +  +  I  L  +G +Y Q   +  P             L +R
Sbjct: 414 VMGIETVAEFVENQDIIDRLLSIGINYAQGYAIGRPQPLANYREQYEMRLAQR 466


>gi|331646758|ref|ZP_08347861.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli M605]
 gi|331045510|gb|EGI17637.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli M605]
          Length = 807

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 227/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AE +  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEGIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHTWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPQYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|209515146|ref|ZP_03264014.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209504400|gb|EEA04388.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 648

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/435 (23%), Positives = 213/435 (48%), Gaps = 10/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  +     A  D+LTG+PNR+SF   L   +   A +      V +ID+D +K++ND+
Sbjct: 206 QQLSDDNYRLANLDSLTGLPNRRSFFSSL-HAISEQALETGGGFNVGLIDLDGFKQVNDI 264

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD VL  +  R+    +   + ARL G+ FG I+  + ++  +      +  ++ 
Sbjct: 265 YGHTSGDLVLQEVGTRLLSFSETGLMFARLGGDEFGAIVRHKLSTEALVALGQRICDALR 324

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  + +    ++ +IG+A++  +  T +++ + A+ A+Y  K         F       
Sbjct: 325 QPYQVADNVAELSGTIGWAAFPEAGSTVAQVFERADAALYVGKENRRGMPVIFSTEHETR 384

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R +  + ++L  A   +EL+L + PI  L+  + +GLEAL +W + + G +   EF+ I
Sbjct: 385 MRRLSLVTQELRHADLEAELFLEFQPIYDLLSRQPIGLEALGRWHNARLGMVRPEEFIRI 444

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I   +L +   ++  W        +++  N+++ D+  +     +  +++ 
Sbjct: 445 AERTELILGITDVLLRQALAEVARWPA-----DLYLSFNLSAIDISTSARARRLIDIVAA 499

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +  SP R+    +E+ +  + E++   +  L++ G  ++LDDFGT  S LSY+  +PFDT
Sbjct: 500 SGVSPHRVTFEITETALTRDFEQAHSAMTMLKQAGCRMSLDDFGTGYSSLSYVHRLPFDT 559

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +T       +  I++S+I + +N+    + + +   +  + +  +G   +Q  
Sbjct: 560 IKIDRSFVTDVDTNSASKKIIKSVIDLCRNLGLECVVEGLETPLQAEVVKALGAREVQGY 619

Query: 939 HVASPLGFNSILKLL 953
             + P+  +++   L
Sbjct: 620 LFSLPMRASAVGTFL 634


>gi|152989945|ref|YP_001355667.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421806|dbj|BAF69310.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 844

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 192/445 (43%), Gaps = 20/445 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I    K  + +   A +D LT + N++ F + ++   + +    + + ++
Sbjct: 408 LLNVVGSVKAI---YKYTKDLEYYATRDPLTNLYNQRVFWELISYEEERAKRH-HYKFSL 463

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +VID+D +K +ND  G   GD+ L  +   + + ++  DI+AR  G+ F I+L  E +  
Sbjct: 464 LVIDLDNFKLVNDTYGHDFGDEFLNKIADLLQDCVRPGDIVARYGGDEFVIVLP-ETDEQ 522

Query: 629 KIADFAIAMRKSIAM--PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                A  + K+           + I    SIG A+         ++   A+  MY AK 
Sbjct: 523 GAFIVANRILKNAEKYSIHTPDGKIINPRLSIGVATCPDHADNIKDLFSIADHMMYKAKS 582

Query: 687 RGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G   V+                I   L  AV+N E+   + PI+ +  E++   E L +
Sbjct: 583 AGKAQVKLPTQEDIEELFQEESEISIFLTEAVKNREIIPYFQPILNVKTEKVEAYELLAR 642

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           + +     + ++ F+ +AE+  +I  ++L +LE+    +   ++        + +N++ K
Sbjct: 643 FRYKD-ELLPAATFIEVAEKTGLIFKMDLILLEKAFEKMQGRKE-------KLFVNLSPK 694

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+ ++    +  L+      P  +    +E   + N    +  +  L+  G +  +DDF
Sbjct: 695 ALVISDYFLKVNQLVKTYGIDPKNLVFEITERDTVKNFSLLQKFVNELKNSGFNFAIDDF 754

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S   Y+  +P D VK  G  +      EK  A + SI+ ++K +    +A+ I  E
Sbjct: 755 GSGFSSFYYVKQLPIDYVKIEGEFIKNLLVDEKDRAFVESIVTLSKKLGIKTVAEFIEDE 814

Query: 922 IDIKELTRMGCDYIQDSHVASPLGF 946
             +  + ++  DY Q  ++  P   
Sbjct: 815 SILHAIQQLEIDYGQGYYIGKPSPE 839


>gi|284993318|ref|YP_003411873.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284066564|gb|ADB77502.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 775

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 217/462 (46%), Gaps = 27/462 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T ++ S+      A  D+LTG+ NR   +DRL      +    + R  V+  D+D +K 
Sbjct: 314 VTGRQASIAAAEHAAVHDSLTGLANRVLLMDRLDAAAHRAERRPDARFAVLYCDLDGFKG 373

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD++LV + RR+   ++  D+++RL G+   ++L       + A  A  + 
Sbjct: 374 VNDQLGHDAGDELLVGVARRLERAVRPGDLVSRLGGDEMAVLLDGVTGVEEAAGVAERLL 433

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKI-------------------TSSEMLKNAEL 679
            ++A P  +  RE+ VT S+G A   +  +                    + E+L+ A+L
Sbjct: 434 AALAEPYAIDGREVVVTVSVGVAVADAEGLARPRLRGEREGLTGSDESGHAEEVLRAADL 493

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+  AK  GG+  E F         DR+ ++  L  AV    + + Y PI+R+ D  +V 
Sbjct: 494 ALQRAKATGGHRYELFNEPLRQRTRDRLGLRAALRRAVGAGAVTVAYQPIVRVTDGRLVA 553

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FI 796
           +E L +W   + G++ ++EF+ +AEE  +I  + + +LE+     + WR          +
Sbjct: 554 VETLARWHDAERGDVPAAEFIALAEETGLIHDLGMQVLEQACTQAVQWRRVFGPTSTPRV 613

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++++ LL  +    +  L+ +       ++L  +ES  M     +R  L R    G+
Sbjct: 614 AVNVSTRQLLPADFAPRVLELLDRVGLPADALELEMTESCAME--PGARAALERFTAAGV 671

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTII 914
           +L +DDFGT  S  + L        K + S +    + R   AI+ +++ +A+++  T+ 
Sbjct: 672 TLAVDDFGTGYSSFAALRERTPQAFKLDRSFVARLPDDRPTDAIVSAVLALAQHLGATVT 731

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKE 955
           A+ +  +  ++ L  +GC  +Q   + SP     I +  L  
Sbjct: 732 AEGVETDEQLQRLRELGCPQVQGFLLGSPATAQQIERDWLSR 773


>gi|328949307|ref|YP_004366644.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
 gi|328449631|gb|AEB15347.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
          Length = 821

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 212/449 (47%), Gaps = 16/449 (3%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            ++  I    D  E ++S   +      D+LT +PNR       T  +           +
Sbjct: 377 SLILIISQVKDSYELRRSNLKMEYMLGHDSLTDLPNRFK-----TQAVFNDIQKSGKNFS 431

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENN 626
           +++ DID +K IND    A GD VL ++  R+       DI ++R  G+ F ++ + +  
Sbjct: 432 LVLFDIDDFKNINDFYSHACGDIVLKTIASRLKSYSAGKDIFVSRFGGDEFLVLYLEKQL 491

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +    +    +R  +  PIN  E  I + +S+G  +    +    +M++NA++A+Y AK+
Sbjct: 492 NEDSIEI-HELRAILKSPINYAESNIHIQSSLGIVNSNDDE--MEKMIQNADIALYRAKN 548

Query: 687 RGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    F   +     +   I   L  A+ N  +++ Y P I +   EI G EAL++ 
Sbjct: 549 SGKNKSVFFNEKMRDRIFENNRISRILDDAIANDGIWVAYQPQIDVETGEIHGYEALMRL 608

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            + K   +S ++F+ IAEE   I  I+  + E++ R +  WR+   +P   + IN +   
Sbjct: 609 KNTK---VSPAQFIPIAEETGRIIKIDRILTEKVVRQMAEWREH-GIPLYKVSINYSYSQ 664

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           + D    + ++ L+ +    P  I +  +ES+ + N E    LL    K GISL LDDFG
Sbjct: 665 VSDVHYVDFLEELLKRYNIPPELICIEITESLFISNKEAVSKLLNEFVKRGISLALDDFG 724

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
           T  S LSYL ++P + VK + SL+    + ++   +++I+ +  ++   +  + +  +  
Sbjct: 725 TGYSSLSYLTFLPINVVKIDKSLVDNYLSNEKGDFIKNIVRLVHSLAMKLTVEGVEHQWQ 784

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++L    CDYIQ  + + P+    I   
Sbjct: 785 NEKLKTFHCDYIQGYYYSKPISGAEIEDF 813


>gi|126699220|ref|YP_001088117.1| putative signaling protein [Clostridium difficile 630]
 gi|115250657|emb|CAJ68481.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 514

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/446 (23%), Positives = 196/446 (43%), Gaps = 9/446 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I I   I ++      +   A+ DNLTG  N  +    +     +   +  ++  ++ I
Sbjct: 67  VILIFYIIYDKLNFKIKLQRIAYTDNLTG-AN--TIDKFVIDANKILCKNTQVKYALLYI 123

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DIDK+K IND+ G  VG+++L +LT+ I   +   ++ AR+S + F II+        I 
Sbjct: 124 DIDKFKYINDLFGYEVGNEILCNLTKIIKSNIFEEEMFARISADNFIIIMKYI-EEEDIT 182

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + + + +  N  E +  +  S G           + ++  A +    AK    + 
Sbjct: 183 KRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHKSS 242

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +             ++  +  ++EN E  +   P I L   EI G EAL++W  P  
Sbjct: 243 YAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDK 302

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I  +EF+   E    +  ++L++LE +   +  W D     P+ + +N++   L  N 
Sbjct: 303 GLIPPNEFIPFFERNGFVINLDLYVLEEVCIYLRKWIDAGIN-PVTVSVNVSRIHLYCNN 361

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E  + +I K       I+L  +ES++  N +    ++  L+KIG  +++DDFG+  S 
Sbjct: 362 FIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYSS 421

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L  IP D +K +   +  +  +++   I+  +I MAK +   +I++ +  E   K L
Sbjct: 422 LNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKLL 481

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             + CD  Q      P+       L+
Sbjct: 482 KEVKCDMAQGYLFGKPMPIEEFEHLI 507


>gi|119945816|ref|YP_943496.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119864420|gb|ABM03897.1| sensor histidine kinase protein, PAS/GGDEF/EAL domains,
           cyclic-di-GMP regulation [Psychromonas ingrahamii 37]
          Length = 560

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/560 (20%), Positives = 225/560 (40%), Gaps = 13/560 (2%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +R       S + +W+                    A  +    ++ W   +H +D 
Sbjct: 10  ETLKRFMDIFETSHEGLWEMGPDFQVNFLNRSFYNAF--AVSTRGSNLKEWTALVHPDDV 67

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             F   ++  +      +  E+RV+    ++ W+  +     + +G ++   G   D+TE
Sbjct: 68  HLFTQKVEQQIDNMTTVVDSEYRVKNKVGEYIWIAAKSTSRFDPDGHLIYMAGSHKDVTE 127

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++   +   A+ D  TG+ N    L  L       A        ++ I +  +    D
Sbjct: 128 EKENQHRLYQTAYIDPNTGLMNAHKLLQDLKDNFSQQA------GALLFIKLINFNVYID 181

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G  ++  L   + EL        R   + F I +     S +I      +    
Sbjct: 182 SYGTYAGHKIVRKLLNCLSELFIGDCQFYRQKSSEFVIRITKPVTSERIEKSIEQLLVIF 241

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                 L+       S+G     SS      +L   +L M +A          F      
Sbjct: 242 KHNGKDLKNNDIPNLSVGICMLPSSAECEKTLLHQVKLTMIYAHEHTDQQFAFFNEQIKH 301

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ IK  +  A+ N+E  L + PII+   +++   EALI+WD P +G I   EF+ 
Sbjct: 302 IVKKRLHIKTAMKSALYNNEFLLKFQPIIQSKTKKVDSFEALIRWDSPVFGEIMPDEFIP 361

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            AE+   I  I  F+LE+    I  + +  +   + I INI+   LL ++  + + + +S
Sbjct: 362 AAEQNLNIIDIGYFVLEQACTFICRYHELNDRL-VKIAINISGIQLLQHDFVDRVLSTVS 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           + + + S I L  +ES+++ +   ++  + RLR  G S+++DDFGT  S L+    +PF 
Sbjct: 421 QFMLNNSDIVLEITESLLLDSNNFAKEQITRLRDKGFSVSMDDFGTGYSSLNNFFTLPFT 480

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +  ++     T +  A +  +I + +N +  ++A+ I  +     +  +G + +Q 
Sbjct: 481 QLKIDRQVVNQSMMTTEARAYIAFLIQLCQNKDIEVVAEGIETQEMSDAMKAIGVNLLQG 540

Query: 938 SHVASPLGFNSILKLLKERF 957
              + P      L + + +F
Sbjct: 541 YLFSKPASAADALNICEYKF 560


>gi|109900333|ref|YP_663588.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702614|gb|ABG42534.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 746

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 195/439 (44%), Gaps = 13/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E       +   AF+D LT +PNR  F++RL  I   S   ++    V +IDI+ +  IN
Sbjct: 312 ENVNLFHQLHTAAFKDWLTKLPNRIEFINRLDDI---SNDAEHANDVVALIDINHFADIN 368

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   G+D L++L +RI         L R+  + F ++                ++  
Sbjct: 369 DGLGQDTGNDTLLALAQRIESTFPTAAALGRIGSDVFAVVGTER------EVNPATLQGL 422

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                   +  + ++A+ GF  +   K T   +LK+A +A+  AK     + E +     
Sbjct: 423 FNNAFEAGDHMLPLSAAFGFCRFNGKKNTGINILKHANIALNRAKKSLKTNFEYYAPEME 482

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 ++    L       +L L Y P I L+ ++I+G+EAL++W     G +S + F+
Sbjct: 483 EQTTWRLEMIRQLRTDFAERKLQLWYQPQIDLVTQDIIGMEALLRWPSSDGGFVSPAVFV 542

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  ++++     +    +      + + +NI+     D      ++  I
Sbjct: 543 PLAEYSGLIIDIGAWVMQESCEKLRLLTEA-GFKGLRMAVNISMPQFRDPAFINLVKKAI 601

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  I+L  +ES+VM  P+     L  L++ G+ + LDDFGT  S +SYL  +P 
Sbjct: 602 INNDLEPDCIELEITESIVMDEPQLVVEALNELKEFGVKVALDDFGTGFSSMSYLQQLPL 661

Query: 879 DTVKFNGSLMTGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + + ++  +  + A +  +I+ +   +    IA+ I        L ++GCD  Q 
Sbjct: 662 DRLKVDRAFVSEISPNKSAFIAETIVTLGTKLGLRTIAEGIEKPEQANYLLKLGCDEAQG 721

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+ F  +L  + +R
Sbjct: 722 FMYAKPMPFGELLTFIGQR 740


>gi|261250588|ref|ZP_05943163.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260939157|gb|EEX95144.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 846

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/431 (23%), Positives = 204/431 (47%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S   +      D+LT + +R+  ++    +         L  ++M++ I K++ IND
Sbjct: 415 LKASFRALRSQLLYDSLTKLYSREGLIESCDKL-------PTLNGSLMLVGIKKFRDIND 467

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L+++++R+  +      LAR+ G+ F I    +    ++   A    +  
Sbjct: 468 SLGHYKGDQLLINISQRLHSIYSEDHYLARIGGDEFAIYTPKKQTEQELILSANRTHQIF 527

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  + +  + V  SIG           +  L+N  +A+ +AK    N        +  
Sbjct: 528 ASPFIMGQDNVIVNISIGIVENGPDF-NMTLWLRNGSIALSNAKRELSNISFYRPEMADI 586

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S +  +    +  A+E+ E    Y P+I L   E++G EAL +W  P  G IS  EF+ I
Sbjct: 587 SRKRTLMVAKIKDAIEHKEFTPFYQPLIDLSSGEVIGAEALARWLSPSSGLISPLEFIPI 646

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I+A+   +L +   D +   ++        + +N++   L   +    +Q +++
Sbjct: 647 AEESGLIEAVGEQILLQACNDTVRGIKEGKWNSNFHMHVNLSVNQLSQPDFISTLQKVLT 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++  +PS + L  +ES ++ N   +   +  +R +G+ + +DDFGT  S L+YL  +PFD
Sbjct: 707 QSTLNPSNLTLEITESRIVDNDPVTIQNMQAVRDLGVHIAIDDFGTGYSSLAYLHKLPFD 766

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +   + +    +I+ +II M + ++ T++A+ I      + LT++ C   Q 
Sbjct: 767 CIKIDRTFVEKLSPQDLDTSIVAAIINMTRGMKVTLVAEGIETSEQAQMLTQLNCQQGQG 826

Query: 938 SHVASPLGFNS 948
              + P+ F+ 
Sbjct: 827 FLYSRPVPFDE 837


>gi|86739994|ref|YP_480394.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86566856|gb|ABD10665.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 604

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 204/425 (48%), Gaps = 8/425 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           D LTG+P R+ FLD  +  L             +V++ID+D+ + +N  LG   GD +L 
Sbjct: 116 DELTGLPGRRYFLDVASRCLTGGEHRARGATSVSVLLIDLDRMRDVNGALGHEHGDRLLA 175

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++  R+   L   D+LAR+ GN F ++L    +  +    A  +R+ + +P+ L    + 
Sbjct: 176 TVGCRLRGALPGSDLLARVDGNAFAVLLRG-ADVARAEQVARRLREVLELPVPLAGTPVR 234

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLC 712
             AS+G A        + E+ ++AE AMY AK  R G  V +         R++++ ++ 
Sbjct: 235 PEASVGIAHAPEHGRGALELFRHAEEAMYLAKGGRHGQTVYARDHPPINRARLLLRAEVR 294

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+++ ++ L Y P   L    I G+EAL++W HP  G      F+   E   ++  + +
Sbjct: 295 HALDSGQIELSYQPKADLRSGRISGVEALVRWRHPVDGVRQPDAFLAEIERAGLMPKLTV 354

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L++   D   W       P+ + +N+ +  ++D      ++A +++    PS + +  
Sbjct: 355 QVLDQALADCARWH--GRGAPLAVSVNVPASVIVDRAFVGVVRAALARHRLPPSALVIEV 412

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E  ++   E ++  L  LR+ G+ ++LDD+GT    LSYL  +P D VK + + +    
Sbjct: 413 TEDSLIVARELAQGTLAGLRRFGVRVSLDDYGTGFCSLSYLRELPADEVKLDRTFLRDLD 472

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  I+RS + +A  +   I+A+ +  +     L    CD +Q   V+ P+    ++
Sbjct: 473 RDPAAAEIVRSTVSLAHALRLRIVAEGVETQRSWTSLAAWQCDEVQGYFVSRPMAGERVV 532

Query: 951 KLLKE 955
             L+E
Sbjct: 533 GWLRE 537


>gi|260753082|ref|YP_003225975.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552445|gb|ACV75391.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 441

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 219/444 (49%), Gaps = 15/444 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T +K+  +   C    D+ TG+ NR+ F   L   ++    DD++  ++ +IDID +K+
Sbjct: 4   LTIEKEIEQQASC---YDSTTGLANRRQFFADL-QAVNSPYRDDSIPFSIGIIDIDGFKR 59

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G  +GD +L  +  R+   L+   ++ R+  + FG IL  +  S  +     ++ 
Sbjct: 60  INEIYGHDIGDFILDKIGHRLYLALRHKALVYRIGNDEFGFILPGDKESTILNQEIASIL 119

Query: 639 KSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGNHV---ES 694
           ++I+ PI+    +I ++ S G A S+  +  ++ ++ ++A+ A+Y+AK +GG        
Sbjct: 120 ETISHPISARNNQIVISCSAGCARSYFGTANSTQQIFEHADYALYYAKEQGGQGQIVVFD 179

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +  +I+  L  A  + E ++ + PII   +  I+  E+L +WD P  G I+ 
Sbjct: 180 VNHELKLKELALIERALEKADFDKEFFIQFQPIIDSRNGGIITFESLARWDSPGLGRIAP 239

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AE+   I  +   + ++   +   W        I +  N+++ D+   +    +
Sbjct: 240 DKFIQVAEQTGAIIRLTPILFKKALNEAKKWPHS-----IKLSFNLSAHDISHEKQINLL 294

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ ++   P RI+   +E+ VM N   +   + +L+ +G S+ LDDFGT  S LS+L 
Sbjct: 295 LDILKQSNIDPERIEFELTETAVMHNFAAAFDNVKKLQAVGASIALDDFGTGYSSLSHLQ 354

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P + +K + S +T      +   I++SII + + I    +A+ +  +  +  L  +G 
Sbjct: 355 NFPLNKIKIDRSFVTNLEYNNRNYKIIKSIIILCREIGLDCVAEGVEDKEKVDLLAHLGV 414

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             IQ  + +SPL   S    ++ R
Sbjct: 415 YLIQGYYYSSPLSAESAQVYIRNR 438


>gi|145222661|ref|YP_001133339.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
 gi|145215147|gb|ABP44551.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
          Length = 785

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/458 (24%), Positives = 214/458 (46%), Gaps = 28/458 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +  L      A +D LTG+ NR  F DRL   L L   D+     V+ +D+D +K +N
Sbjct: 322 ENRYLLSLAAERALRDPLTGLANRSLFQDRLAHALMLRERDNR-SVAVISLDLDDFKLVN 380

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  V D +LVS  RRI   ++  D +AR+ G+ F ++L  + +S  +   A  +  +
Sbjct: 381 DSLGHPVADSLLVSAGRRIIGCVRTGDTVARVGGDEFALLLEGDASSPDL--IAQRVADA 438

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            A P  +   +I +  SIG A     +   ++  ++  A++AMY AK    + V +F   
Sbjct: 439 FAEPFIVDGHQILMHPSIGVAVTPPDEAEVSAQTLITRADMAMYTAKKSRSSRVYTFDAD 498

Query: 699 SFRSDR-------------------VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
                                    V +  +L  A++ +EL +VY P + L    I+G+E
Sbjct: 499 MTLPGPDADSMTESPDRKPGAGAAKVQLLGELRRAIDAAELEMVYQPKVALRTGRIIGVE 558

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +    FM +  +  +++ ++  +++++     +W+ +     I + +N
Sbjct: 559 ALLRWPHPRLGLLYPGAFMSLVRQHGLMRPVSDLVVDKVLDAATAWKAEG--VRIPVAVN 616

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + +  L D +L + +   + K   +   + +  +E +V+ +      +L +LR  GI + 
Sbjct: 617 LFAPTLRDAQLPDRLLGALEKRGLTADMLTVEITEDLVVDDLGTVTDVLQQLRHCGIRVA 676

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  S LSYL  +P D +K +   +       +  A++ ++I +A ++   ++A+ 
Sbjct: 677 IDDFGSGYSALSYLRDLPIDEIKLDRYFVAPVTEDPRAAAVVSAVIDLAHDLGIVVVAEG 736

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   +    L    CD  Q  +   P     +  L++ 
Sbjct: 737 VEEPVTAHWLRGKQCDIAQGYYFGRPTDRAHLPGLVEA 774


>gi|225849752|ref|YP_002729986.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225646225|gb|ACO04411.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 683

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 196/428 (45%), Gaps = 15/428 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K++  +   A  D LT + NR+ F D L   +  +    N + ++++ID+D +K IND  
Sbjct: 258 KAITELEYFAGHDPLTDLYNRRIFEDLLKYEVSRAKR-KNYKFSLILIDLDNFKYINDTY 316

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD VL S+   +   ++  D++AR+ G+ F I+L SE    K    A  +RK++  
Sbjct: 317 GHHIGDIVLKSVADILEASIRDGDLVARIGGDEFVILL-SETELEKALIVAERIRKNLEN 375

Query: 644 P--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                     I+V+AS+G   + +   T  E++   + A+Y AK  G N V         
Sbjct: 376 NKLCIFEGAVISVSASLGVVEFPTHGTTKEELMMVVDNALYRAKDLGKNKVYVPTHEEIE 435

Query: 702 SDRVMIKED---LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 +++   L  A++       + PI  L ++ +   E L +    K   IS+  F+
Sbjct: 436 KTIKEKRKEFSILQEAIDKELFVPYFQPIYDLKNDNVHAYEVLARLKDEKGEVISAYRFI 495

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+L  IK I+  ++++   +        N     + +N+++KD+ D+   + + +++
Sbjct: 496 SLAEKLGKIKDIDKTIIKKALTEKKE-----NDLKEKLFLNLSAKDISDDSFWQYIFSVV 550

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P  I    +E   +      + L+ +L+  G    +DDFG+  S   YL Y P 
Sbjct: 551 NDLNIDPEEIVFELTEREAVKETAEVQALIVKLKDKGFGFAIDDFGSGYSSFYYLKYFPI 610

Query: 879 DTVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           D VK +G  +        K IA + S+  + K +    +A+ I  E  +K L  +G DY 
Sbjct: 611 DYVKIDGEFIRELKPSDPKSIAFVESMDLLCKRLNIKTVAESIENEDILKILKNIGIDYG 670

Query: 936 QDSHVASP 943
           Q  H+  P
Sbjct: 671 QGFHLGYP 678


>gi|118590304|ref|ZP_01547707.1| hypothetical protein SIAM614_12338 [Stappia aggregata IAM 12614]
 gi|118437276|gb|EAV43914.1| hypothetical protein SIAM614_12338 [Stappia aggregata IAM 12614]
          Length = 903

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/634 (19%), Positives = 244/634 (38%), Gaps = 40/634 (6%)

Query: 343 AWIL---IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ-----HVLATG 394
            W L   I      ++      +              LI+ L   +++      H   + 
Sbjct: 283 GWALKISILSLCAIMFEIAAIAIQKSAPILLPTASAHLILFLAAASIVLRELGFHKFLSH 342

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +    +      L    S D +            +     +    S S+ G       
Sbjct: 343 IANVRRRNSERMLGLVFDDSFDAIVVLQSDGRVSAASQMARKLF--QSESLVGKAA---R 397

Query: 455 YIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRP----------MS 503
            +     +     L        R  +     +R  D +  ++   +            +S
Sbjct: 398 TVLP--LELVEEALSVLASSGSRQPVTKVLDMRLDDGRRRFIEYVVTRSEHTIAKTKKLS 455

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +   + +  +    D+TE+K+S E +   A  D  TG+ NR  F + +   L+L+    +
Sbjct: 456 DVETEAVACL-TCRDVTEEKESAERLAYLARFDPSTGLFNRNGFEEEVAATLNLA-RGTD 513

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++   I  + +I   LG + GD +  ++  R+   L        ++ + F  +   
Sbjct: 514 EDVCLVQFAIANFDQIVASLGFSYGDQLRETVAMRLKSHLSARATWGAMTADVFAGVFRC 573

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E +         A+++ I     +    I+V    G+   +   I    ++K +  A+  
Sbjct: 574 EPDQD--LALIEALQEVIGDDYKIEGARISVQLKFGYIVSSRD-IAPEHLMKKSGNALAK 630

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            +    + V  F          R  ++ +L  A+   EL++VY P+  L D  I G+EAL
Sbjct: 631 VRRDNRSPVLRFLPEMDVALQRRRQLETELFKAIARDELHMVYQPLTNLSDGSIFGVEAL 690

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++WDH + G IS  EF+ IAEE   I  +  + L R  ++ ++W +      + + IN++
Sbjct: 691 LRWDHRELGPISPVEFVPIAEENGYIVELGAWALNRGMKEALTWSNH-----LRLSINVS 745

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +       L   +   + +T +   R+ L  +ES+ +      +  +  +R  G + +LD
Sbjct: 746 AVQFSRGNLVATVGEALQRTGFPSERLDLEITESLFIDETLDLKFAMEEMRAFGCNFSLD 805

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L YL   PF  +K + + +  S   ++ ++++ +++ MAK    ++I + I 
Sbjct: 806 DFGTGYSSLGYLPKYPFSKIKLDKTFVRESIANKQDVSVIEAVLHMAKGHGMSVIVEGIE 865

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                ++L  MGC + Q  +   P+    +  LL
Sbjct: 866 TAEQAEKLREMGCKFGQGYYFGRPMSSAQLQSLL 899


>gi|325680514|ref|ZP_08160062.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324107813|gb|EGC02081.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 769

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/641 (19%), Positives = 251/641 (39%), Gaps = 35/641 (5%)

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
             +   I+   +   + + L    + ++    I L +  T  + +       + G  ++ 
Sbjct: 156 AVFFCVILIFFLASVKTSRLFREKYTVLTGSMIVLGIWQTFYVFSRTPVDRSMIGYGVVG 215

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           IL+ +  + H                  S  V    + ++ +D     +        +  
Sbjct: 216 ILVFYLSLYHRPMRLL--------DRMLSNIVSDMSEALFVYDATGRCIWANEKGMEMTA 267

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             + +        +      +R+                     ++  + +   +  I  
Sbjct: 268 TTAKTFDDVSEALIKKF--GEREYSTA------------WWCTNKIIGSGDDERYYYIEN 313

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           RP+S+    +   +    D TE+++ L+  L N+  D+LTG+  +Q   + +  +L  S 
Sbjct: 314 RPVSDEKDSLAGSVLTVRDNTEEQRRLKRELYNSTHDSLTGLYTKQYLYECVRNMLTSS- 372

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +     + +D+  +K +ND+   A GD+ L  +   I   +    +  RL+G+ FG+
Sbjct: 373 --PDTAFVAVFVDVKNFKIVNDIFSAAFGDNALKQIAEWISRDMNEKCVYGRLAGDTFGV 430

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            L +E            +       +        +   +G        I  S M   A L
Sbjct: 431 FLPAEQFENDRTRIEKELADF---TVTDGNASHHLVMHLGVYEVAERDIDVSVMFDRAHL 487

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+         H+  +             I  +L  A++  +L     PI      ++VG
Sbjct: 488 ALSTITDDYNTHIAYYDNVLREKMLWEQRITAELREALDTMQLRPYLQPITD-RSGKVVG 546

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL +W HP+ G +S + F+ + E+  MI  ++  M     + +  W+ +     +FI 
Sbjct: 547 AEALARWIHPEHGFMSPAMFIPVFEKNGMITEVDKHMWRCACKILADWKKEG--KDLFIS 604

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+ KD    ++   ++ L+++    P  +++  +E+V+M +PE    +L   RK+G  
Sbjct: 605 VNISPKDFYFIDVVSEIKGLVAEYGIDPVNLRIEITETVMMNDPEERMRVLDEFRKLGFI 664

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFG+  S L+ L  +P D +K +     ++GS EK   I+R+II +++ +E   + 
Sbjct: 665 VEMDDFGSGYSSLNLLKDMPVDVLKIDMRFLSVSGSKEKAKTIVRNIIRLSEELEIASLT 724

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +  E    +LT MGC   Q  + A PL           R
Sbjct: 725 EGVENENQYHKLTEMGCKLFQGYYFAKPLPREEFEDFTASR 765


>gi|229527325|ref|ZP_04416717.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229334957|gb|EEO00442.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 849

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 200/431 (46%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  +A+ +AK    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSIALSNAKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEENGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKARIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKVDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|194432017|ref|ZP_03064307.1| heme-regulated cyclic AMP phosphodiesterase [Shigella dysenteriae
           1012]
 gi|194419925|gb|EDX36004.1| heme-regulated cyclic AMP phosphodiesterase [Shigella dysenteriae
           1012]
 gi|332094680|gb|EGI99725.1| putative enzyme [Shigella dysenteriae 155-74]
          Length = 806

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 232/526 (44%), Gaps = 39/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +        +  +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY---DVGKNRYLLSTA 519

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 520 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 579

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 580 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 638

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 639 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 698

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 699 VGLSVDDFGTDFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 758

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 759 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 804



 Score = 63.0 bits (152), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDWRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|167622425|ref|YP_001672719.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352447|gb|ABZ75060.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella halifaxensis HAW-EB4]
          Length = 855

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/574 (19%), Positives = 224/574 (39%), Gaps = 33/574 (5%)

Query: 392 ATGYFSQGIFSDGERQ-------SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
                ++ I    ER         + +    D+V   DI  +     P    +L L++  
Sbjct: 282 ELSQVTKNINQLLERHYRQEKLSQVTLESITDMVILTDIHYNVSYINPYAEHLLKLSNEQ 341

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYE-FRVRAADNQFHWMIIRIRP 501
             G   + L              L++ +    +   L  +  R+R   +    M      
Sbjct: 342 AQGKKLHELL--------PGNQSLNNKITTFMQSSSLSIDSIRLRLNIDSPKLMSGTFGH 393

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N +GDI+  + +  D T++    + +   A+ D +TG+ NR +F +RL     +    
Sbjct: 394 FCNHSGDIIGAVLVLKDTTQEVLLKQQLQRQAYLDPVTGLLNRAAFEERL-----VGYAQ 448

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +    V+  D++++K IND  G   GD +L  + + I   L    +L R+ G+ FG+I+
Sbjct: 449 SSQFIAVVYFDLEQFKLINDSCGHNAGDKMLSKVAKAIESSLSSNMLLGRIGGDEFGLII 508

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELA 680
              +           +       I   +    V  S G A    + +  + E+LK+A++A
Sbjct: 509 KDSSALAVAKLIKKIIASVGCQSIEHNDTSYRVGLSAGVALARFNQQTDALELLKDADIA 568

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
              AK +G N V  +                   +  A+E++EL L Y  I  L      
Sbjct: 569 CLAAKRKGSNQVHFYDSRDKDLSYQRNAPKWAVRIVQAIEHNELILYYQKIKCLSSHSHR 628

Query: 737 G-LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
             LE L++        +  ++F+  AE   +I  ++  ++ +    +    ++       
Sbjct: 629 QRLEILLRIQDAGGRILPPAQFIAAAERFKLIVEVDKEVIRKTFLWLS--LNEQVWSDHC 686

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + IN++   L    + + +     +     S +    +E+  + N  R+  ++  LR+ G
Sbjct: 687 LSINLSGNSLGAEGMIDFILLQQKRFGIPSSCVCFEITETSAIQNHSRALKMIADLRRRG 746

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
            +  LDDFG+  +   YL  +P D VK +G  +       K  AI++S+  + + +    
Sbjct: 747 FAFALDDFGSGFASYGYLKEMPVDYVKIDGCFVKNLASNAKDYAIVKSVNDVCRVMGIET 806

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +A+ +  +  I  L  +G +Y Q   +  P   +
Sbjct: 807 VAEFVENQEIIDRLEVIGVNYAQGYGIGRPQALD 840


>gi|86146588|ref|ZP_01064910.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85835645|gb|EAQ53781.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 857

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 200/446 (44%), Gaps = 13/446 (2%)

Query: 508 DILRYIGIANDITE-QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +I       N++T   K S + +      D+LT + +R+ F+D            +N + 
Sbjct: 400 EISMLTASFNEMTNNLKASFQALQAQLTYDSLTKLYSREGFID------TAKKNPENEKG 453

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           T+ +I ID+++ IND LG   GD +L+    R+   L    +LAR  G+ F I   + N 
Sbjct: 454 TLYLIGIDRFRDINDSLGHYNGDQLLIIAAARLRGTLPSNFLLARTGGDEFAIYAPNINQ 513

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +      + +    P  +    + +  S+G  + + +    + +L+N+ +A+ +AK 
Sbjct: 514 IDDVQLLTSRLLRIFTSPFAMESESVVIKVSMGVVNVS-NVNDITLLLRNSSIALSNAKQ 572

Query: 687 RGGNHVESFRVSSFRSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              +           S     +   L  A++  +    Y PII L     +G EAL +W 
Sbjct: 573 DKTSVSIYNPEMGKASRYRTKMLARLNKAIDLQQFEPFYQPIIDLESGATIGAEALARWV 632

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKD 804
               G IS  EF+ +AEE  +I  I   +L +  RD     +         I +N++   
Sbjct: 633 T-DEGIISPLEFIPLAEETGLIYDIGKQILHKSCRDTAIAIESGKWNKDFSIHVNLSVDQ 691

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L ++   E ++  +  T      + L  +ES ++ N +     +  L+ +GIS+ +DDFG
Sbjct: 692 LSESGFIELVKTTLRDTKLPAQNLTLEITESRIVDNDQTIIDNMLTLKALGISIAIDDFG 751

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL  +PFD +K + S ++   ++    +I+ +I+ + K  + +++A+ +  + 
Sbjct: 752 TGYSSLAYLHKLPFDCLKIDRSFVSKLEKENLDSSIVAAIVNITKGFKVSLVAEGVETQQ 811

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNS 948
             + L ++ C   Q    + P+ F+ 
Sbjct: 812 QAELLKQLQCPLAQGFLYSRPVPFDQ 837


>gi|212634720|ref|YP_002311245.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556204|gb|ACJ28658.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 784

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/434 (24%), Positives = 210/434 (48%), Gaps = 14/434 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A+ D LT + NR    +R+T     S      +  + +I+I +  ++N  LG  V
Sbjct: 359 KIAFQAYHDPLTNLANRNEL-ERVTAGWFESQQ----KVAICLINIRRITEVNVTLGHVV 413

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+V+  + RR+   +   D++ RLS + + +   +  +   + D    ++++I      
Sbjct: 414 GDEVIKEVGRRLTA-MTGIDLVCRLSADEYVLAFKNL-DVKSLKDVLQQLQRNIEREYLY 471

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVM 706
            +  + +  ++G A +         +L+ A+ A++HAK     + V   R+     +R+ 
Sbjct: 472 QDINLHLQVTVGTAFYYP-PADLVTLLRQADTALHHAKKHKLDDQVYDSRIDINTLERLQ 530

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L  A++++EL L Y P + L   ++  +EAL++W HP  G I    F+ IAE+   
Sbjct: 531 LINELKSAIQHNELVLFYQPKLDLALGKVTHVEALVRWLHPVSGLIPPDTFIPIAEKTGQ 590

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           + A+  +++         W+ Q     + I INI++++L D   C+ +  +I+       
Sbjct: 591 MNALTRWVMVEAIAQYHRWKRQ--DIELAIAINISAENLKDESFCQWVLDIIADQNMPIE 648

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +E  V+ +P  +   L  LR+ G+ L++DD+GT  S L+ L  +P D +K + S
Sbjct: 649 ALTLEITEDAVVADPATAIKQLSVLRQYGLKLSIDDYGTGYSSLAQLKQLPVDELKIDRS 708

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           I+ S + +A N+  T++A+ I  +  +  L + GC+  Q  +++ P+
Sbjct: 709 FIQQLMINGDDRTIVNSTLQLAHNLGLTVVAEGIEDKATLSWLKQRGCEMAQGYYLSRPI 768

Query: 945 GFNSILKLLKERFP 958
             + + + L E FP
Sbjct: 769 DADGLSQWLAE-FP 781


>gi|30248111|ref|NP_840181.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas europaea ATCC
           19718]
 gi|30179996|emb|CAD83991.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Nitrosomonas
           europaea ATCC 19718]
          Length = 574

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 214/437 (48%), Gaps = 5/437 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   I    + D LTG+P    F ++  ++L  +A + ++   V  ID+++  +IN  
Sbjct: 132 RQADSHIYRMTYYDELTGLPKHNLFREKAVSLLPDNAINGDMIAAVYFIDVNRLSRINSK 191

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G ++ D+++  L  R+        ILAR+ G+ F  +      + +    A  + K   
Sbjct: 192 YGYSISDNLIQQLASRLSIYSDKTGILARIEGSNFVFLKTGLTGADQAQILANQLLKLAT 251

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
            P  +   E  +T +IG + +         +L NAE A++  K    N  + +       
Sbjct: 252 APFIINNLEFYITLNIGISLYPRDGRDIETLLANAENALFSTKRSWPNTYKFYTAEMGEA 311

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            S +  I++ L   + + E  L Y PII L  + IVG EAL++W HP+ G +S  +F+ +
Sbjct: 312 LSQKTRIEQSLQHTLNDREFILHYQPIIDLKTDSIVGAEALVRWQHPELGLLSPDKFVSL 371

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A E   I  I   +L    R    W+D  + P  F+ +NI++ +L   +L + +   +  
Sbjct: 372 ATESGSIIKIGKRVLHEACRQAKCWQDSNHGPA-FVTVNISAIELDQLQLIKHVAEALQI 430

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P+R++L  SESV+M + + S  +L +L+++GI + +D+FGT  S L+YL  +P DT
Sbjct: 431 TGLDPARLELEISESVLMQDIDGSIRILNKLKEMGIRVVMDNFGTGYSSLNYLRRLPVDT 490

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K    L+           I+ +I+ +A+N+   I A ++     +  L +  C ++Q  
Sbjct: 491 IKIGQPLVQDIASQSDTSVIITAIVTLARNLGMQIRAGNVQSRTQLDFLQKANCHHVQGF 550

Query: 939 HVASPLGFNSILKLLKE 955
             + P+   ++L L+++
Sbjct: 551 LFSPPVSAENLLPLIEQ 567


>gi|291299866|ref|YP_003511144.1| diguanylate cyclase/phosphodiesterase [Stackebrandtia nassauensis
           DSM 44728]
 gi|290569086|gb|ADD42051.1| diguanylate cyclase/phosphodiesterase [Stackebrandtia nassauensis
           DSM 44728]
          Length = 693

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 114/432 (26%), Positives = 209/432 (48%), Gaps = 10/432 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT +PNR+ F + +   L  S      +  VMV DID++  +N+ LG  VGD +L
Sbjct: 246 ALSDQLTTLPNRKGFQELVEANLLRSKVS-GAKLAVMVCDIDRFAAVNNSLGHDVGDRLL 304

Query: 593 VSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           + LTRR      +  +++AR+ G+ F  +L            A  ++ ++   + L E  
Sbjct: 305 LELTRRFRSCFDRPHEVVARIGGDEFAFLLAEIPGVEYAKRRAGCLQSALGASVVLDEVS 364

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKED 710
           + V+ ++G A +         + ++A +AM  AK RG G  V +         R+ +  D
Sbjct: 365 LDVSGAVGVACYPDHGEDFDALFRHANVAMAEAKKRGSGIAVYAPEFDHHSPQRLALLGD 424

Query: 711 LCLAVENSEL---YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           L  A++   L    L Y P + L   E++G+EAL+++ HP  G++   + + +AE   ++
Sbjct: 425 LRRALDTPGLPGVELYYQPQVDLNTGEVLGVEALLRYRHPVQGSVDPGDLIALAEHSSVM 484

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + +   +++     +  WR   +   +   IN++ +DL   + C+ +   ++      S+
Sbjct: 485 RLLTYRVIDEAVGQLARWRA--DDLELRAAINVSVRDLHAPDFCDYLTERLAHHEIPTSQ 542

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES +M +P R    L RL  +GI L+LDDFGT  S + +L  +    VK + S 
Sbjct: 543 VQLEITESALMADPRRVIATLKRLEAMGIGLSLDDFGTGFSSMKHLRSLQVSEVKIDKSF 602

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G       +AI++SII + + +   ++A+ I  E   + L  +GCD  Q    A P+ 
Sbjct: 603 VLGMKEDPDAVAIVKSIIELGRALSLRVVAEGIEDEATWRHLVTLGCDTGQGWFHARPMP 662

Query: 946 FNSILKLLKERF 957
             + +  L+   
Sbjct: 663 AEAFVSWLRRYQ 674


>gi|16329354|ref|NP_440082.1| hypothetical protein slr1103 [Synechocystis sp. PCC 6803]
 gi|1651835|dbj|BAA16762.1| slr1103 [Synechocystis sp. PCC 6803]
          Length = 706

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/558 (21%), Positives = 243/558 (43%), Gaps = 28/558 (5%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +D  R S     S   + + D     V   P           S+     N L   H    
Sbjct: 164 ADLVRFSSFAELSPHPIVEIDFNGKIVYLNP---------PASIKFRDINDLGVSHP--- 211

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                +L+     R   L  E           +          +   I+R      DIT 
Sbjct: 212 -ILEGLLNQAQNVRGNLLLREV----KSGDECYEQY---VHYLTENQIIR--SYLIDITR 261

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++ + +  + F D +TG+PN   F ++L   L     D + R  ++ ++   Y+++ +
Sbjct: 262 RQQAEDSLAQHTFYDPMTGLPNHAFFEEQLAIALAKVQRDQS-RLAILFLNFYNYERMIN 320

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G+  G+ +L ++ +R+ +  +   +  R  G +F I+L    ++  + +    M   +
Sbjct: 321 AFGLGCGEILLKTVAKRLSQWTEKRGLACRWQGKQFAILLKEPGDNQALTEMVKEMLAML 380

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              I++ +++I +   +G A +       + +LKN+  A+   K +  +    F   +  
Sbjct: 381 EESIDVAKQKIHLKGKVGIAVYPDGGTDGATLLKNSHTALEQIKEKHFDSFAFFNEKAAS 440

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   ++  L  A++  + YL Y PI+++   EI G+EAL++W HP+ G IS    + 
Sbjct: 441 KANLFFRLENLLYEALDKHQFYLTYQPILQITTGEITGMEALLRWHHPEIGEISPVNLIP 500

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  ++L    +    W+    +PP+ + IN+      +  L   +Q+++ 
Sbjct: 501 LAEKTDLIVPIGEWILRTACQQNRQWQGA-GIPPLPVCINLCLNQFQNPHLIANIQSILE 559

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P  + +  +ES++M N + SR  + +L  IG++L+LDDFG     LS L      
Sbjct: 560 ENQLEPHWLTIEVTESIIMDNIDYSRRAIEQLATIGVNLSLDDFGIGLGTLSCLQQFKIP 619

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +     +    AI+ SI+ + + +   II++ +  +  ++ L ++ C  IQ 
Sbjct: 620 AVKIHESFIKDLEQSPVNEAIITSIMTLGRKLGVRIISEGVETQQQLEVLQKLECQEIQG 679

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL  ++  +LL +
Sbjct: 680 FWFSRPLKVDAATELLSQ 697


>gi|255100744|ref|ZP_05329721.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 514

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/446 (23%), Positives = 196/446 (43%), Gaps = 9/446 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I I   I ++      +   A+ DNLTG  N  +    +     +   +  ++  ++ I
Sbjct: 67  VILIFYIIYDKLNFKIKLQRIAYTDNLTG-AN--TIDKFVIDANKILCKNTQVKYALLYI 123

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DIDK+K IND+ G  VG+++L +LT+ I   +   ++ AR+S + F II+        I 
Sbjct: 124 DIDKFKYINDLFGYEVGNEILRNLTKIIKSNIFEEEMFARISADNFIIIMKYI-EEEDIT 182

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + + + +  N  E +  +  S G           + ++  A +    AK    + 
Sbjct: 183 KRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHKSS 242

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +             ++  +  ++EN E  +   P I L   EI G EAL++W  P  
Sbjct: 243 YAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDK 302

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I  +EF+   E    +  ++L++LE +   +  W D     P+ + +N++   L  N 
Sbjct: 303 GLIPPNEFIPFFERNGFVINLDLYVLEEVCIYLRKWIDAGIN-PVTVSVNVSRIHLYCNN 361

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E  + +I K       I+L  +ES++  N +    ++  L+KIG  +++DDFG+  S 
Sbjct: 362 FIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYSS 421

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L  IP D +K +   +  +  +++   I+  +I MAK +   +I++ +  E   K L
Sbjct: 422 LNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKLL 481

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             + CD  Q      P+       L+
Sbjct: 482 KEVKCDMAQGYLFGKPMPIEEFEHLI 507


>gi|315179079|gb|ADT85993.1| Predicted signal transduction protein/diguanylate
           cyclase/phosphodiesterase [Vibrio furnissii NCTC 11218]
          Length = 768

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 211/447 (47%), Gaps = 14/447 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           YI        QK  ++ +   A  D LT + NR    +    I         L   ++ I
Sbjct: 328 YILFLRIDHHQKAKVKALTKQANHDYLTKLNNRYYLDNNFMKI-------SKLGSALITI 380

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND  G  VGD VL+ +++RI   +K      R SG+ F  +  S  +   + 
Sbjct: 381 DLDNFKAINDTFGHEVGDKVLIEVSKRIRLFVKGSGTAIRYSGDEFV-VCTSIQDKRDLE 439

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            +  ++  +I +PI L      +TA  G    ++   T  E+ + A+ A+Y AK    + 
Sbjct: 440 SYVTSLLDAIKVPILLDNYTFCITAKSGVVVSSNEGDTLDELKRRADFALYEAKGMRSSV 499

Query: 692 VESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           V   +    +  R+  I+ +L  A+ N+ELY+ Y P       ++ G+EAL +W +P  G
Sbjct: 500 VFYEKSIDEKYQRLGQIEYELKSALTNNELYIAYQPQCDF-SGQVKGIEALARWTNPTLG 558

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           ++    F+ +AE    I +I  F+L++  +++       N  PI + INI+   LL    
Sbjct: 559 SVRPDHFISVAESSGDILSIGSFLLQKAMKEVNEIL-MPNTLPISLSINISVIQLLSEGF 617

Query: 811 CEGMQALISKTLYSPS-RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            E + +   +   +P+  ++L  +ESV + N      LL +L+  G  ++LDDFGT  S 
Sbjct: 618 REQLISSFQEYNDNPNVTVQLEVTESVFIENKTYVIELLSKLKNDGFLISLDDFGTGYSS 677

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS    +P + +K + + +   TE  +   ++ +II +AK++   ++A+ +  +     L
Sbjct: 678 LSLFEKLPLNELKLDKAFIDRVTESYRSEQMVHNIIMLAKSMGVKVVAEGVETKEQKLLL 737

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLK 954
            + GCD  Q    + PL   S+ + ++
Sbjct: 738 EKYGCDLFQGYLFSKPLDKESLKQYIE 764


>gi|257484170|ref|ZP_05638211.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 543

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +         V V+D+D +K +ND+ 
Sbjct: 99  QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMQEA-LAQRTGLAVGVLDLDGFKPVNDLY 157

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 158 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFALVIKGDISNDALLAFGKHLCELMHE 217

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 218 SFELSDMPIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 277

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 278 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 337

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 338 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 392

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 393 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 452

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 453 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 512

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 513 YSPPISFEQTLVWIE 527


>gi|254470381|ref|ZP_05083785.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
 gi|211960692|gb|EEA95888.1| diguanylate cyclase/phosphodiesterase [Pseudovibrio sp. JE062]
          Length = 772

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 114/450 (25%), Positives = 201/450 (44%), Gaps = 34/450 (7%)

Query: 519 ITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +T++    E      A  D L G+PNR  F      +L        +   ++ +D+D +K
Sbjct: 320 MTDRILQNEADATHAALHDALCGLPNRTWFEVFAADVLKRDRQKQRITG-IVFLDLDHFK 378

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +IND LG ++GD+V+  +  R+   +   D +AR+SG+ F ++L       +I +  + +
Sbjct: 379 QINDSLGHSIGDEVIKLVAERLKASINPEDRVARVSGDEFLLVLSHRTKMEEIIETCMYI 438

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            K ++    + + +I  TAS+G A   +     +E+L+ A++A+Y AK  G      F  
Sbjct: 439 EKMLSDAFKVEKHKILTTASMGVAIAPAHGHDLTELLRRADIALYQAKKLGRGRYVLFEK 498

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                      I+ED+  A+  +E    Y PI+      I+  EALI+W+HPK G +  +
Sbjct: 499 EMEDTLQISREIEEDIKRALNANEFQNYYQPIMDQSGTNILAAEALIRWNHPKKGLLPPA 558

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  +I  I  ++LE   +D  +  +      + + +N++   L   E  E + 
Sbjct: 559 AFLPVAEESMLINRIGEWVLENAIKDGATLDE------VTMCVNVSPTQLRHPEFPELVS 612

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+ K     +R++L  +E V++   E    ++ RLR +G+ + LDDFGT  S LSYL  
Sbjct: 613 KLLEKYQLEANRLELEVTEDVLINYSETVVEVIERLRNLGVKIALDDFGTGFSSLSYLRR 672

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR---- 929
             FD +K + S + G  +  K   IL S I +   +              +         
Sbjct: 673 DLFDKIKIDRSFINGAVTDAKAREILASAITLGLRLGM-----------QVCVEGVEEEE 721

Query: 930 -------MGCDYIQDSHVASPLGFNSILKL 952
                  M C  +Q    + P+        
Sbjct: 722 QKELLLTMDCPMMQGYLFSRPIPLGKFRLW 751


>gi|209548847|ref|YP_002280764.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534603|gb|ACI54538.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 709

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 200/439 (45%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  +  L  A  D+L+G+ NR   L  L        +  +  P + ++D+D +K +ND
Sbjct: 283 LRQLAQAALFEAGHDSLSGLLNRHGLLSLLEEF----KSSGSSPPRLYLVDLDGFKAVND 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  ++  +          ARL G+ F ++ +       +      +    
Sbjct: 339 AWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVHVGSATCEDMEK---TILALF 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  +  R I V ASIG A    + I   E+L+ A++A+Y AK  G      +      
Sbjct: 396 AEPFKIDGRTIEVGASIGAA-AGDAGIEPLELLRRADMALYRAKANGRGQAIEYDPELDE 454

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    ++  L  A+ +  +  V+ P++      + GLEAL +W     GNIS   F+ 
Sbjct: 455 ERQRVAELEGLLKGAIGSGAIEAVFQPLVSATTGAVTGLEALARWRTST-GNISPEIFIP 513

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+ + ML        SW      P + + +N++   L + E    + +++ 
Sbjct: 514 LAERCGLIDALGVHMLRTSIEHARSW------PDLALSVNVSPIQLCNPEFAAEVISVLQ 567

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  + P R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L    FD
Sbjct: 568 ELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFD 627

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++   E      +LR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 628 RMKIDRSLVSALDEGANGADVLRATISLATALQIPVTAEGIENSRQAAILREAGCDQLQG 687

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+    I   L+E 
Sbjct: 688 YLIGRPMSARDISSKLEEE 706


>gi|326318634|ref|YP_004236306.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375470|gb|ADX47739.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 847

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 204/434 (47%), Gaps = 15/434 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI-DIDKYKKIN 580
            + S E +      D LTG+  R+  L++            + +  V+V+  ID ++ +N
Sbjct: 419 LRHSFEQLHRQLLGDPLTGLLTRRGLLEKAD--------WPHPQRAVLVLAGIDAFRAVN 470

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D +G+  GD +L +   R+   L  P   ARL G+ F ++ +  + +   AD   A++  
Sbjct: 471 DSMGLDTGDRLLQAAADRMRGSLPAPAFAARLGGDEFALLYL-ASEAAPPADAGRAIQDI 529

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
            A P ++ E E+ +T S+G  S T      ++ L+NA  A+  AK  G      F     
Sbjct: 530 FAQPFSVGEDEVQLTVSVGTVSGTLPAGRLADWLRNASSALGEAKRMGRGQCVPFTPDMM 589

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +RV +  +L  A+E  +  L Y P++ L     +G EAL++W+ P  G +    F+
Sbjct: 590 ERSLERVRLASELRQALERGQFVLHYQPVVELSSGRTIGAEALVRWESPTRGMVPPGVFI 649

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  +  ++L      I     Q       I +N++++ L+ ++  + ++ ++
Sbjct: 650 PVAEASDLILGLGEWVLREATHAIAGQLPQLPD-GFDIHVNVSARQLIQSDFQDTLKQIL 708

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             +   P  + L  +ESV++ +   +R  L  +R +G+ + +DDFGT  S L+YLG +PF
Sbjct: 709 QDSGLPPGHLTLELTESVLLEDDGVTRARLAAIRALGVKIAIDDFGTGYSSLAYLGRLPF 768

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +     + +  AI+ +++ MA+    T++A+ +    +   L  MGC   Q
Sbjct: 769 DCLKVDQRFVRNLLHSPQDEAIVTAVLSMARGFAVTVVAEGVETAEEADRLRSMGCASAQ 828

Query: 937 DSHVASPLGFNSIL 950
             H   P     + 
Sbjct: 829 GYHFGRPAPLEHLR 842


>gi|240141245|ref|YP_002965725.1| hypothetical protein MexAM1_META1p4839 [Methylobacterium extorquens
           AM1]
 gi|240011222|gb|ACS42448.1| Hypothetical protein MexAM1_META1p4839 [Methylobacterium extorquens
           AM1]
          Length = 514

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 222/500 (44%), Gaps = 12/500 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
               +  R +       R  R + E  + A   + + +  ++     ++ ++        
Sbjct: 14  PERDERIRRLERRVARERSARAEAESLLEAKSRELYALNQQLSR-FAADLELRVDERTR- 71

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKY 576
              E   + E  +  A +D LTG+ NR  F   L   +  +     + R  ++++D+D++
Sbjct: 72  ---ELALARERAVALAERDQLTGLANRTRFARVLGAAVGRAGRGTGSERFALLLLDLDRF 128

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD  L  + RR+   +    + ARL G+ F  I+        +A    A
Sbjct: 129 KEINDSLGHEAGDVFLQHVARRLSGTIGQGAVAARLGGDEFAAIVP-LGPRSDLARLGEA 187

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   I  P+    R +  +AS+G A +     T S++ + A++A+Y +K           
Sbjct: 188 VVADIRRPVAYRGRMLEASASLGIAVFPDDAATGSDLQRFADIALYRSKAARAAWTRFDP 247

Query: 697 VSSFRSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +    +  DL  A+ +  +   + PI+  +    VG EAL +W HP+ G ++ +
Sbjct: 248 RMGREIEERQALGADLGAAIRSGAIEPWFQPIVDGVTRCPVGAEALARWVHPQLGFLAPA 307

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AEE  M++ +   M+ R       W     +    + +N++        + + + 
Sbjct: 308 AFLGLAEERGMMRDLFAGMMRRACPPARGWVRAGAIR--TLSVNLSPSQFKLGSVADDVI 365

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+++  + P  + +  +E V++ + +R+R+ L RL   G+ + LDDFG   S ++YL  
Sbjct: 366 ALLAELDFPPEALTVEITEEVLLNDLDRARVQLERLAAHGVRIALDDFGVGYSNIAYLRR 425

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P  T+K +  L     ++  A  IL +I+ +A+ ++  ++A+ +        L+ +GC 
Sbjct: 426 LPIQTLKLDRLLTVDVAQEHEARCILGAIVQIARALDLRLVAEGVEDPGQALWLSHLGCR 485

Query: 934 YIQDSHVASPLGFNSILKLL 953
           ++Q      P+   +    L
Sbjct: 486 HLQGYLFGRPMPAEAFAGYL 505


>gi|229524727|ref|ZP_04414132.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229338308|gb|EEO03325.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 849

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/431 (24%), Positives = 198/431 (45%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    I         L   +++I IDK++ IND
Sbjct: 417 LKASFKALRSQLVYDSLTQLLSREGLVEHCHQI-------PQLNGGLILIGIDKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV++ +R+      P ++AR+ G+ F I L   N    +   A  + K  
Sbjct: 470 SLGHHQADQLLVAIAQRLKVTFPEPALIARIGGDEFAIYLPDVNQQDDLKSVATDILKLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P ++    I V  SIG        +T    L+N  + + + K    +        +  
Sbjct: 530 ASPFSMPSDNIAVNVSIGIVYLEEPNMTV--WLRNGSITLSNTKAEHTHISFYSPEMANA 587

Query: 702 SDRVMIK-EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S + M+    + LA++N E    Y PI+ L   E++G EAL +W  P++G I   +F+ I
Sbjct: 588 SRKRMLMVTQIKLALDNQEFVPFYQPIVDLNSGEVLGAEALARWISPEFGLIPPMDFIPI 647

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +   P    + +N++   L   +    + +++ 
Sbjct: 648 AEESGLINAIGEQILRQACADTVRGIAENKWPSTFHMHVNLSVNQLSHPDFIAQLHSVLD 707

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ N       +  L+K  I + +DDFGT  S L+YL  +PFD
Sbjct: 708 ESGLQPANLTLEITESRIVDNDPVILHNMLELKKAKIHIAIDDFGTGYSSLAYLHKLPFD 767

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ I  +  +  L ++GC   Q 
Sbjct: 768 CLKIDREFVSQLNAYNIENSVVAAIVNMTRGFKVELVAEGIETQEQVDLLNQLGCPRGQG 827

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 828 FLFSKPMAYQD 838


>gi|152967639|ref|YP_001363423.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362156|gb|ABS05159.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 747

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 222/435 (51%), Gaps = 10/435 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLG 584
                 A  D+LTG+P+R++ L   +  L   +        P ++V+D+D +K +ND LG
Sbjct: 304 RRHERRAGVDDLTGLPDRETLLTATSRALRGVVPGQRPRTGPGLLVVDLDHFKDVNDTLG 363

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L  +  R+        ++ARL G+ FG+++    ++  +A   +     ++ P
Sbjct: 364 HPVGDVLLREVAERLVTQAPPGTVVARLGGDEFGLLVADAADAEALAAAVV---AEMSRP 420

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSD 703
           + + + ++ + AS+G A       ++  +LKNA++A+YHAK  RG     +         
Sbjct: 421 LRVGDLQVLLPASVGVALAPDHGTSAPSLLKNADVALYHAKEVRGRFRTYAGGRDGNSVQ 480

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ +  DL  AV+  EL++ Y P I L    +VG EAL +W HP+ G ++   F+ +AE+
Sbjct: 481 RLRLLGDLGRAVDRGELHVRYQPQIDLRTGAVVGAEALARWQHPELGPVAPDRFIPLAEQ 540

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   +L+R   D+  WR     P   + +N++++ L D+ L   + A + +   
Sbjct: 541 SGLIAGVTAVVLDRALADVARWRATGATPS--VSVNLSARLLDDDHLPALVAAALQRHDV 598

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +E+ ++ +PER+  ++ RLR +G ++ +DD+GT    L+YL  +  D +K 
Sbjct: 599 EADALVLEVTETGIVSDPERAGAVVRRLRALGCAVAVDDYGTGQCSLTYLTDLAVDELKI 658

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +TG T    R  I+RS + MA+++   ++A+ +      + L  +GC   Q  HV 
Sbjct: 659 DRSFVTGMTTDRARAVIVRSTVQMARDLGLRVVAEGVADAATQRALADLGCHVAQGEHVG 718

Query: 942 SPLGFNSILKLLKER 956
            P     +L  L+ +
Sbjct: 719 DPATALEVLARLQGQ 733


>gi|158313879|ref|YP_001506387.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EAN1pec]
 gi|158109284|gb|ABW11481.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EAN1pec]
          Length = 1186

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 203/481 (42%), Gaps = 46/481 (9%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +     A+ D LT +  R          +  +   D     ++++DI++++++ND LG
Sbjct: 161 LFQWRGEQAYSDPLTSLVARSGLTRAADPAIARAVKKDR-EAVLLLLDINRFREVNDALG 219

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL---------------- 628
              GD++L  L R +  +   P  + RL  + F +++     +                 
Sbjct: 220 HEAGDELLRQLARALPTVTPRPSFVGRLGSDEFALVIPGPPGADRRDDELGGGDASRGDP 279

Query: 629 ------------------------KIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
                                    + +   ++ + I  P  +   E+ V AS G A   
Sbjct: 280 DRGGSAHGGPHRGGSVSTSASRESDLRELGQSVLRQIEGPFTVHGVEVEVEASAGLAVAP 339

Query: 665 SSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
               T   +L  A+ A+  AK  G    +    ++  RS  + +  +L  A+   EL + 
Sbjct: 340 RDGETIGSLLPCADAALSRAKREGERVGLWDAGIAGVRSWEIALYAELRAAIARDELIVF 399

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P+       IVG+EAL++W HP  G +    F+ +AE   +I  +  ++L+   R   
Sbjct: 400 YQPLQAAATGRIVGVEALVRWSHPTRGLLPPGAFLPMAERSALIVDVTRWVLDEALRQCA 459

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +W  +    P  + +N++++ L+ ++L   +   +++    P  + L  +ES ++  P R
Sbjct: 460 AWAARGLHVP--VSVNLSARMLVLDDLPSLVTGSLARHQLPPDVLTLEITESALVTQPGR 517

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRS 901
           +  +L  LR  G+ L LDDFGT  S +  L  +PFD VK +   +          AI+RS
Sbjct: 518 AAAMLRELRSKGVKLALDDFGTGYSSMEILKALPFDEVKIDRGFVADVRGSLLDAAIVRS 577

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           ++ +   +   ++ + +  +  ++ +T +GCD +Q   V+ P   + +  LL ER     
Sbjct: 578 VLDLGHRLGLRVVGEGVEDDRTLRMMTELGCDILQGDAVSRPRPPSHLEDLLVERAAPAD 637

Query: 962 N 962
            
Sbjct: 638 R 638


>gi|29171508|ref|NP_808692.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28856001|gb|AAO59058.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 649

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/436 (24%), Positives = 214/436 (49%), Gaps = 10/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNANLMLANRDSLTGLPNRRHFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +L+ +  R+         ++RL G+ F +++  + ++  +  F   +   +  
Sbjct: 271 GHSVGDRLLMLVAERLTTAASDTVHVSRLGGDEFALVIKGDTSNEALLMFGKHLCTLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSEIPIQIGATLGFATYPATADNATQLFEYADYALYQGKNHNPGSTCIFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +WD P  G +S + F+ IA
Sbjct: 391 SADGVTEQALRRANLKTEFHVLFQPIIESCTRETVAFEALARWDSPVLGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L +  +  +SW       PI +  N+++ D    E  + +  +I  +
Sbjct: 451 ERIGMINELTAPLLTQALQRALSWPS-----PIRLSFNLSAHDCATWESVKRIVDIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM + ++ +  + R R++G  ++LDDFGT  + LS L  +P   +
Sbjct: 506 GFDASRLDLEITETAVMQDIDQVQQAILRFRQLGCGISLDDFGTGYTSLSQLHALPLTKL 565

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +           I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVRCVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLKE 955
            + P+ F   L  ++ 
Sbjct: 626 YSPPITFAETLVWIEA 641


>gi|134103306|ref|YP_001108967.1| hypothetical protein SACE_6878 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004475|ref|ZP_06562448.1| hypothetical protein SeryN2_08137 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915929|emb|CAM06042.1| hypothetical protein SACE_6878 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 877

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/790 (19%), Positives = 311/790 (39%), Gaps = 90/790 (11%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
             +         L +  A  E+ L+++L+  L   +   R    V Y        IA+ F
Sbjct: 90  GWTISFTEIPLILGLLTAPFEVVLAANLLAGLGAQVG-RRAATHVAYNAGVMCLEIAVPF 148

Query: 298 CMSF------------YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
            ++             ++  V  ++    ++         ++   M+    A L +    
Sbjct: 149 AVASVVTRTVGTASPEWFGPVVGTLTSPLISCGFALAALHVLGGAMRVSAGARLAVNTLA 208

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS--- 402
           +  +      ++    + +      L+ GLV + +L  +     +L      + +     
Sbjct: 209 VGLLNTSVGLISYE--VASTTPWGWLLVGLVAVAVLGLYRAYSGLLREQRDLEALSDVSL 266

Query: 403 DGER--QSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHI- 458
              R  Q+ A   S D     D+    VT   P    I       ++         +   
Sbjct: 267 SVARSGQATARGPSSDA----DLEAPSVTEWEPVAERI----REQLNATRVVLRLRLDPN 318

Query: 459 ---------------NDRDNFRTILDSFVGYRRGRLQYEFR-------VRAADNQFHWMI 496
                           ++     + D  +    G     FR       VR A  Q     
Sbjct: 319 GEVSTLVAGDPLPEAAEQAAPSALRDDPLLQLPGSHVRSFRTLEAPEEVRRALRQRGAYE 378

Query: 497 IRIRPMSNS---------NGDILRYIGIAN-DI-------------TEQKKSLEGILCNA 533
             + P+  +         +  + R+ G    D+              + ++ L  +  +A
Sbjct: 379 ALVVPLRGASQLLGAVEAHDRVSRWRGFGRADVRLLHTLASHLATAMDNRRLLARLRHDA 438

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+ NR  F +     +      +     V+ +D+D    +++ LG   GD ++V
Sbjct: 439 YHDPLTGLLNRTGFRE-----MSAEELRNGRTAVVLRMDLDVLTTVSEALGYTWGDRMVV 493

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +  RR+ + L     LARL  N F ++L+      +  + A  +R+ IA P  L +  + 
Sbjct: 494 AAGRRMRDALGAEPPLARLEANAFAMLLLDHT-EDEAREVATRLREVIAEPYPLDKLVVE 552

Query: 654 VTASIGFASW-TSSKI---TSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIK 708
            TA  G+ S   +          +L+ A++A+  A++   G    +  +      R  + 
Sbjct: 553 ATAVAGYVSSAPADGEPENDVDTLLQRADVAVRAARNGEDGVRRYAPAMGQVFLRRFQLV 612

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
                A+++ ++ + Y P + L +  +VG EAL++W HP++G +   EF+ + E   ++ 
Sbjct: 613 TQFRQAIDSGQIEVHYQPKVSLPERRVVGAEALVRWSHPEYGRLDPDEFVPVVEATGLVD 672

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A+  F++E     +  W D+     + + +N++ ++L D    + +   + +    P  +
Sbjct: 673 ALTSFVMECALVKVREWLDRGLR--MSVAVNLSVRNLADESFPDRVAEALGRHEIPPELL 730

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               +ES VM +PERS  +L RL  +G+ L +DDFGT  S L+YL  +P D VK + S +
Sbjct: 731 TFELTESSVMEDPERSMPVLRRLHALGVVLAVDDFGTGYSSLAYLRQLPVDEVKIDKSFV 790

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G       +A++RSI+ +  ++E  ++A+ +  +    +L  MGCD  Q   ++ PL  
Sbjct: 791 LGMGTDLGDMAVVRSIVELGHSLELVVVAEGVEDDAARDQLVAMGCDIAQGYLISRPLPE 850

Query: 947 NSILKLLKER 956
           + +   L+ R
Sbjct: 851 DRLEAWLRAR 860


>gi|195953778|ref|YP_002122068.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Hydrogenobaculum sp. Y04AAS1]
 gi|195933390|gb|ACG58090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Hydrogenobaculum sp. Y04AAS1]
          Length = 1122

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/557 (19%), Positives = 224/557 (40%), Gaps = 20/557 (3%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465
               A+  S   V   D     +     +  I   +   + G     +    H  D D ++
Sbjct: 575  LRKALENSKGWVLITDEEGYILYANQMVCEISLYSCEEVIGRKPNIFKSGYH--DNDFYK 632

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +  +      G  +  F  +  + +   +   I P++  +G I RYI IA DIT++ + 
Sbjct: 633  RLWRTIKSG--GTFESIFYNKKKNGEIFILEESIIPVTLKDGTI-RYITIAKDITQEVEL 689

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             + +   +F D+ TG+ N   F   +   L+    + + +  ++++DI  +  +N + G 
Sbjct: 690  EKKLERFSFMDSATGLLNINGFSKAINDRLEYLK-NQSKKGALILLDIYGFSILNQIYGF 748

Query: 586  AVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               D+++  +   + ELL+  D I+A++  + FG I         +  F   +    A  
Sbjct: 749  NKADEIVKKVANMLKELLEPEDVIIAKIGPDEFG-IFKDIEKEEDLFAFVDKINDIFASG 807

Query: 645  INLLEREIT----VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            I +          +  ++G + +     +  ++ + A LA+  AK  G      F     
Sbjct: 808  IEIELDNFRKLDKLHINMGISLYDEDGDSFEKLYERASLALQEAKKDGEGKYRFFSKDID 867

Query: 701  RSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +  ++    +  A++       Y P   +  ++ VG EALI+        IS  +F+
Sbjct: 868  IVVKRYVEAQELVERALDKGLFKFFYQPYFDIKTKDFVGFEALIRIIDEDGSIISPYKFI 927

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
               E           +  ++    ++              NI++    D+     +  L 
Sbjct: 928  DYLESSSYFLNRFQEVFLKMVESDMNTFISKAKSHFSSAFNISANSFKDDIFMSKLIGLC 987

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             K      ++ +  +E +++ + E+++ +L  +R +G  + LDDFGT  S LSY+  +  
Sbjct: 988  HKFE---DKLVIEITERMLLSDFEKAKEILRNIRSVGSKVALDDFGTYYSSLSYVKNVEL 1044

Query: 879  DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + S +      ++ +A++++II +AK ++   IA+ +  E     L   GCD  Q
Sbjct: 1045 DIIKIDISFIKDIVFDKRSLAVVKAIINLAKALDIKTIAEGVEKEEQYNLLKEAGCDIAQ 1104

Query: 937  DSHVASPLGFNSILKLL 953
                A P+     +K +
Sbjct: 1105 GYLFAKPMPIEEAVKYI 1121


>gi|255655637|ref|ZP_05401046.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 514

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 193/430 (44%), Gaps = 9/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ DNLTG  N  +    +     +   +  ++  ++ IDIDK+K IND+ G  V
Sbjct: 83  KLQKIAYTDNLTG-AN--TIDKFVIDANKILCKNTQVKYALLYIDIDKFKYINDLFGYEV 139

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           G+++L +LT+ I   +   ++ AR+S + F II+        I +    + + + +  N 
Sbjct: 140 GNEILRNLTKIIKSNIFEEEMFARISADNFIIIMKYI-EEEDITNRLKIIFEELDLFNNN 198

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
            E +  +  S G           + ++  A +    AK    +    +            
Sbjct: 199 QEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHKSSYAFYDNKIHDQEIKEK 258

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  +  ++EN E  +   P I L   EI G EAL++W  P  G I  +EF+   E+  
Sbjct: 259 EMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDKGLIPPNEFIPFFEKNG 318

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  ++L++LE +   +  W D     P+ I +N++   L  N   E  + +I K     
Sbjct: 319 FVINLDLYVLEEVCIYLRKWIDAGIN-PVTISVNVSRIHLYCNNFIETYKNIIDKYNIPA 377

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I+L  +ES++  N +    ++  L+KIG  +++DDFG+  S L+ L  IP D +K + 
Sbjct: 378 KYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYSSLNMLKEIPMDILKLDQ 437

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +  +  +++   I+  ++ MAK +   +I++ +  E   + L  + CD  Q      P
Sbjct: 438 KFIMETYNSKRSKIIVTKVVEMAKELGMKVISEGVETEEQFELLKEVKCDMAQGYLFGKP 497

Query: 944 LGFNSILKLL 953
           +       L+
Sbjct: 498 MPIEEFEHLI 507


>gi|241203010|ref|YP_002974106.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856900|gb|ACS54567.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 653

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 203/448 (45%), Gaps = 19/448 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K+               A  D LTG+ NR+SF   L   L     D +
Sbjct: 193 NFVGLVQLTEELKQKQAEAEELNLVNSRNALHDQLTGLANRRSFFLSLEKRL---QKDSS 249

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + ++D+D +K +NDV G A GD VL    RR   L+    I++RL G+ FGII  S
Sbjct: 250 TPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFVALVGEEGIVSRLGGDEFGIIFPS 309

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+  ++  P  + +  + V  S G         T+ ++ + A+ A+Y 
Sbjct: 310 LMTRQAIADLGQALCAAVRDPFEIPDGSVRVFGSCGIVYPDIGTYTAEDLYEKADFALYQ 369

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L       EL L Y PI+ L    +V  EAL
Sbjct: 370 VKSKRSSGVEFFSAEHEKILTQRHLIELELQANDFAKELKLDYQPIVELRSGRVVAYEAL 429

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS   F+  AE   +I  I   +  +    +           + +  N++
Sbjct: 430 ARWDSARFGRISPDAFIPAAERTAVIGRITRILFAKALEALAIIPRH-----LRLSFNLS 484

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    + A+I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 485 ARDICDHETSMALLAMITRSGIDPKRIEFEITETALLSDFDTADQVISMLRAAGISIALD 544

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K + S +           I RS+  + +N+    +A+ + 
Sbjct: 545 DFGTGYSSLSHIHRLGFDKLKIDKSFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVE 604

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            E   + L  MG    Q  H + PL   
Sbjct: 605 SEEIAEGLKAMGVRLAQGYHFSRPLPLE 632


>gi|300782516|ref|YP_003762807.1| signal sensor protein [Amycolatopsis mediterranei U32]
 gi|299792030|gb|ADJ42405.1| signal sensor protein [Amycolatopsis mediterranei U32]
          Length = 881

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 207/442 (46%), Gaps = 14/442 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++ L  +  +A+ D LTG  NR  F       +      D     V+ ID+D +  ++
Sbjct: 431 DNRRLLATLRHDAYHDPLTGHLNRPGFRQ-----VAKEPLRDFANAVVLRIDLDVFSTVS 485

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A  D ++V+  RRI + L     LARL G  F  +L+           A  +R+ 
Sbjct: 486 DALGYAWADRMVVAAGRRIRDALGPDVPLARLEGASFAALLVGLP-PEDAHRAAERLREE 544

Query: 641 IAMPINLLEREITVTASIGFASW----TSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++ P  +    +   A IG+A+         +    +L+ A++A+   K           
Sbjct: 545 LSAPYPVDRLSVEANAMIGYATTSAEEPGDVVDIEGLLQRADVAVRATKGGEEVRGYVPS 604

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +      R  +      ++E+ ++ + Y P I L + ++ G+EAL++W HP++G +   E
Sbjct: 605 MGQIFLRRFQMVTQFRQSLEDGQVSVHYQPKITLPNRQVQGVEALVRWVHPEFGRLGPDE 664

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E   +I  +  F+L    +    W D+     I + +N++ ++L D +    +  
Sbjct: 665 FVPAIEAAGLIGVLTGFVLGEALKRCRKWLDEGLR--ISVAVNLSVRNLADEDFPNKVAR 722

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +      P  +    +ES VM +P+++  +L  L  +GI+L +DDFGT  S L+YL  +
Sbjct: 723 ELEHYGIPPELLTFELTESGVMSDPQKALPILRELHSLGITLAVDDFGTGYSSLAYLRQL 782

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D VK + S + G       +A++RSI+ +  ++  T++A+ +  ++   +L  MGCD 
Sbjct: 783 PVDQVKIDKSFVLGMGTDLGDLAVVRSIVELGHSLGLTVVAEGVEEDVARDQLEAMGCDV 842

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q   ++ PL  + +   L+ R
Sbjct: 843 AQGYLISRPLPEDRLEAWLQAR 864


>gi|256389809|ref|YP_003111373.1| diguanylate cyclase/phosphodiesterase [Catenulispora acidiphila DSM
           44928]
 gi|256356035|gb|ACU69532.1| diguanylate cyclase/phosphodiesterase [Catenulispora acidiphila DSM
           44928]
          Length = 752

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 111/433 (25%), Positives = 200/433 (46%), Gaps = 14/433 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  L  +   A++D+LTG+ NR  F +R    L  +  D      +++ID+D +K++ND 
Sbjct: 314 RAMLRELKHRAYRDSLTGLGNRLRFQERAERALARAQ-DCGGEAAMLLIDLDNFKEVNDT 372

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  VGD++LV+  +RI   ++  D+  RL G+ F ++L            A  +   +A
Sbjct: 373 QGHKVGDELLVAAGQRIAGAVRPGDLPVRLGGDEFAVLLSDGATETAAVALAQRLIGVLA 432

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSE-MLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            P  L    + V ASIG A+ +     + E + +NA+LA+Y AK  G      F  S + 
Sbjct: 433 EPFRLAGAPVPVRASIGVATSSGGAGGTEEVLFRNADLALYAAKADGKGTWRLFEPSLYE 492

Query: 702 SDRVMIKED--LCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFM 758
           +    +     L  A+   E  L Y PI+ L     + G EAL++W HP+ G +S   F+
Sbjct: 493 AALQRLALRTGLDRALAVGEFELHYQPIVELQGPPRVAGFEALVRWRHPQLGLLSPGNFV 552

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE   I  I  ++L +      +  D A     ++ +N++     +    + +++ +
Sbjct: 553 PVAEETGQITPIGAWILRQ------ATADAAAAGFGYVAVNVSPHQFSNGGFVDTVRSAL 606

Query: 819 SKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                   R+ +  +E+V +      + L L RL  +G+ + +DDFGT  S + YL  + 
Sbjct: 607 RAADLPADRLTVEITENVFLHEATANALLDLQRLAMLGVRVAIDDFGTGYSSIGYLRDLK 666

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +      +    +LR I+ +A  ++  ++A+ +        L  MGC Y 
Sbjct: 667 FDVIKADKSFVDWIASKKDHERLLRGIVHVAGTMDIAVVAEGVETVEQRDLLRDMGCAYA 726

Query: 936 QDSHVASPLGFNS 948
           Q    +  +    
Sbjct: 727 QGFFYSPAVPLGE 739


>gi|187919387|ref|YP_001888418.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187717825|gb|ACD19048.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 211/436 (48%), Gaps = 10/436 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  +     A  D+LT +PNR+SF   L   L   A   +    V +ID+D +K++ND+
Sbjct: 215 QRLSDDNFRLASIDSLTDLPNRRSFFASL-RALSEQAIGTSGGFNVGLIDLDGFKQVNDI 273

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  +  R+  L +     ARL G+ FG++   +     + +    + +++ 
Sbjct: 274 YGHASGDLVLQEVGSRLLALAEPGIFFARLGGDEFGVLAQHKLTDETLVELGERICEALG 333

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +      ++ +IG+A++  +  T +++ + A+ A+Y  K         F       
Sbjct: 334 QPYRVAGNVAELSGTIGWAAFPEAGTTVAQVFERADAALYVGKESRRGTPVIFSTEHETR 393

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    + ++L  A   SEL+L + PI  ++ +  +G+EAL +W + + G +   EF+ I
Sbjct: 394 IRRSSLVTQELRHADLESELFLEFQPIYDVVTQRTLGMEALGRWHNARLGAVRPEEFIRI 453

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I   +L +   +   W  +     +++  N+++ D+  +     +  ++  
Sbjct: 454 AERTELILRITDVLLHKALDEAARWPCE-----LYLSFNLSAIDICTSARAGRLIDIVLA 508

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P R+    +E+ V  + E++R  L  ++K G  ++LDDFGT  S LSY+  +PFDT
Sbjct: 509 SGVPPHRVSFEITETAVTRDFEQARSSLTMIKKAGCRVSLDDFGTGYSSLSYVHRLPFDT 568

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S MT       +  I++S++ + +N+    + + +     ++ +  +G   +Q  
Sbjct: 569 IKIDRSFMTDVDTNSASKKIVKSVLDLCRNLGLECVVEGLETASQVEVVKTLGARAVQGY 628

Query: 939 HVASPLGFNSILKLLK 954
             + P+  ++I   L+
Sbjct: 629 LFSRPMRASAIAAYLQ 644


>gi|332530096|ref|ZP_08406046.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
 gi|332040569|gb|EGI76945.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Hylemonella gracilis ATCC
           19624]
          Length = 679

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 216/451 (47%), Gaps = 18/451 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  + +  L  A  D +TG+PNR+ F +    +++ +     +  T++ ++ID+   I+ 
Sbjct: 225 RAAAEQRALRLAHYDEVTGLPNRRLFAELAVPVIERARR-GGVGCTMLHVEIDRLSGIHH 283

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI------------LARLSGNRFGIILISENNSLK 629
           V G A GD+ L  +T+RI   ++  D+            +ARL  + F I+L   ++  +
Sbjct: 284 VYGRAAGDEALADITQRIRMCIRGGDLAAAGTTGDGSGVVARLGDSAFSILLNDLDSQER 343

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            +  A  +  ++A P+ +  + + ++ASIG A +       + +++ A  A   A   GG
Sbjct: 344 ASLVAHRLLAAVAQPVVVDTQPLVLSASIGIALFPGDAPDLTGLMQCAAQAARAAAEAGG 403

Query: 690 NHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F    +    +RV+++ +L  A++  +L L Y P + +    IVG EAL++W HP
Sbjct: 404 GQHMFFDAAHNVQARERVLLETELRQAIQTGQLCLHYQPKVDVRSGRIVGAEALVRWSHP 463

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I    F+ +AEE  +I  +  ++L      +  W D    P + + +N+ +  L D
Sbjct: 464 QRGLIPPGHFIPLAEESGLIGPLTDWVLHAACGSLRRWADAGL-PELPLSVNLPASSLAD 522

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L + + AL+ +    PS + L  +E+++M +   +  +L RLR  G  L LDDFGT  
Sbjct: 523 ERLLDQLAALMQRYRLRPSNLMLELTETMLMRDIGAAIGVLERLRDQGYGLALDDFGTGY 582

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P   +K + + +       +  A+  ++I + + +   ++A+ +  E   +
Sbjct: 583 SSLNYLKRLPVSELKIDRAFVIDVARGGRDGALAAAVITLGRELGLQVVAEGVETEEQSE 642

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L   GC   Q    + P+       +++ +
Sbjct: 643 FLRGRGCVLQQGYLHSRPVAQGEFEAMMRSQ 673


>gi|294010819|ref|YP_003544279.1| PleD related family two-component system response regulator
           [Sphingobium japonicum UT26S]
 gi|292674149|dbj|BAI95667.1| PleD related family two-component system response regulator
           [Sphingobium japonicum UT26S]
          Length = 559

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 218/468 (46%), Gaps = 31/468 (6%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +  ++ + +L+ +   A  D +TG+ NR SF  ++  +L  +   +     +  ID
Sbjct: 100 VAMESLFSQVRTNLDHVQALALFDPVTGLANRISFCRQVERLL--AERSEEGLAALFFID 157

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-------FPDILARLSGNRFGIILISEN 625
           +D +K +ND LG A GD +L  +  R+ E+            ++ RL+G+ F + + S  
Sbjct: 158 LDGFKGVNDTLGHAAGDQLLARVAGRLREVAMAQASAGAGDCLIGRLAGDEFTLFVPSLP 217

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A A++ ++    +L  + + + ASIG A +     T S +L++A++AMYHAK
Sbjct: 218 DMDSAGRIARAIQFALRERFDLGSQHVDLGASIGVACYPEHGDTLSALLRSADIAMYHAK 277

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           H+G N  E F        +DR  ++ DL L ++  E  L + P I +    ++G EALI+
Sbjct: 278 HQGRNRAEMFTTELALEAADRAELERDLLLGLQREEFLLEFQPQIEIGSGRVIGAEALIR 337

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+   +    F+ IAEE   I A+  +++ R+      W          I INI+S+
Sbjct: 338 WAHPERELVMPGSFVSIAEESGAIVALGDWVMGRVCETAARWSQAGVRQ--RIAINISSR 395

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           +L   +    ++  I         ++L  +ES+ M     +   +  LR+ G+ + +DDF
Sbjct: 396 ELGQADFFMRLRHAIDAHRAPAIMLELEITESLAMEMKAGTLDQIRALRRDGVRIAIDDF 455

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET--------TI 913
           GT  S LS L  +P D VK + SL+     + +   I  +++ + + +          T 
Sbjct: 456 GTGYSNLSRLRELPVDRVKIDRSLVRDIAVSAEARTICSAVVGLIQGLGMEVVVEGVET- 514

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
                  E  ++ L  +GC   Q  H+A P+G    L       PL +
Sbjct: 515 -------EAQMEMLRVIGCTLFQGYHLARPMGEEDYLARFAAPAPLAR 555


>gi|261253011|ref|ZP_05945584.1| sensory box sensor/GGDEF/EAL domain protein [Vibrio orientalis CIP
           102891]
 gi|260936402|gb|EEX92391.1| sensory box sensor/GGDEF/EAL domain protein [Vibrio orientalis CIP
           102891]
          Length = 831

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/580 (21%), Positives = 244/580 (42%), Gaps = 24/580 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            T I+  +        + +D       +  S   V   D     +        I G    
Sbjct: 264 LTRIEGNVRNISDLSELVNDHLIAQRVIELSSSGVILTDANNLILNMNSKAEDITGYRLD 323

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            M+G P   +   IH  DR  ++T+  S           E   +      +   + I  +
Sbjct: 324 EMYGLPPSTFSSDIH--DRKFYKTMWQSI--ELSDCWSGEVWNKTKSGAIYPEQLSIHVV 379

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               GDI  YI I +D++ +K     +L    + + TG+  R  F+  L          D
Sbjct: 380 RGRKGDIQNYIAIFDDLSYKKSIENELLKYRNKQDFTGLMTRTKFIQMLE---------D 430

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIIL 621
           N    V+++DI ++ +IN++ G   G+ VL  + + +          + R   ++F  + 
Sbjct: 431 NPEFAVLLVDISRFSEINNLYGEEFGNKVLSYVGQILYANYSAEKLNICRYGADQFA-LA 489

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +  N   +      +R ++    ++    + +  ++G++       + +  L  A  A+
Sbjct: 490 WNLANVSGVEQLVSTIRATVEEAFSIDGTTMNLAVNMGYSL-PIESTSETHPLTKAYYAL 548

Query: 682 YHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             AK +   G    S  +      +  +   L  A++   L++ Y PI  L    IV  E
Sbjct: 549 EEAKSQLTPGTIRYSDYLEQRAERKHQLGAMLKQALDEERLHVEYQPIYDLQTRTIVKFE 608

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +W      +IS  EF+ IAEEL  I  +   +L+++ +DI+S +       I I +N
Sbjct: 609 ALARWV-EGNQSISPFEFIPIAEELGYISQLGNLILKKVCKDILSMKALGFDE-IVISVN 666

Query: 800 IASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            + ++LL+ E+    + + + ++  S   + +  +ES+ + +  + + LL  LRK G+ L
Sbjct: 667 RSIEELLNEEIDNCSILSQLEESGLSTRDVIIEITESIPLEDKPQVQDLLDCLRKRGLKL 726

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  +  S L     D +K + S +      +    ++ S+  +A  +   +IA+
Sbjct: 727 ALDDFGTGFASFSNLMKNTVDLLKIDRSFIRDIESDKNNAVLVESVNMLASQLGLEVIAE 786

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  +  ++ L  MGC YIQ  +++ P+ F+  + LL++ 
Sbjct: 787 GVETKQQLELLQSMGCRYIQGYYISKPVPFDKAMTLLEKY 826


>gi|332305203|ref|YP_004433054.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172532|gb|AEE21786.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 569

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 208/438 (47%), Gaps = 7/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             KS   +   A +D LTG+ NR  F + L  ++  +    + +  ++ +D+D +K IND
Sbjct: 131 MHKSYLAVKKMAEKDPLTGLSNRYHFEETLKILIASNKRVTS-KVALLALDLDNFKHIND 189

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G A GD VL    +RI + L+  +  ARL G+ F IIL +  +  +I+  A  +  S 
Sbjct: 190 TMGHAAGDKVLQQSVKRIRKCLRNNEGFARLGGDEFAIILGNITSGDEISRIANRILDSF 249

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +  N+ ++E+    SIG A      + +  +LK A++AMY AK  G N V  +      
Sbjct: 250 KVAFNIDDKEVHCGVSIGVALCPDDSVNAQTLLKCADIAMYRAKQNGKNGVSFYESYYQT 309

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I+ +L   +EN+   L+Y P+    D+ ++G EALI+W   +       EF+ 
Sbjct: 310 EFNQRFLIQNELIGVLENASFRLLYQPLFSAKDKSLLGFEALIRWPEMEPHFTP-EEFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I  +++      +  W  Q     + + +NI++  L D++L   +   + 
Sbjct: 369 VAEQSKLINRIGEWVITTAFNQLSQWHRQF-NTALTMSVNISAVQLHDSDLLPYLSHTLE 427

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               S + + L  +E+ ++ + ++   +L  L   G  + LDDFG   S +S+L   P D
Sbjct: 428 WLSLSANSVILEITETALIKDNKKVTDILRVLSGRGFKIALDDFGMGFSSVSHLMEYPID 487

Query: 880 TVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S+  +  +  +   I +++  M K ++  ++A+ I  +  + +  +   + +Q 
Sbjct: 488 IVKLDKSMQTSNESSDKHQRIFKALALMLKTLDFVVVAEGIETKEQLLQCQQFNLERLQG 547

Query: 938 SHVASPLGFNSILKLLKE 955
           +++  PL        L  
Sbjct: 548 NYLGLPLNKERSELFLAS 565


>gi|95928493|ref|ZP_01311240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135283|gb|EAT16935.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 657

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/621 (18%), Positives = 244/621 (39%), Gaps = 20/621 (3%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
                +   ++ F+  +     +   L        +       V +  +   + +L    
Sbjct: 25  PFFGAVIVCVISFVQKVKWGGDLPYDLAGYATPSLVGWVAGSFVSIGLWRSRELMLRLQR 84

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            S  +    E++S  +   G+ + ++D          +   +LG +S  M G     L  
Sbjct: 85  TSLALKEQAEKKSHVLDSVGEGICEFDADGLCCYANREACRMLGYSSFEMSGKNIFSLFR 144

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQ-----YEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            H  DR      L+    +R    Q     YE  +   +++     I I P  N+     
Sbjct: 145 YH--DRYGHEVSLEPLWSHRTFSTQKRDTIYEEILWQREHEIIATEICIYPALNAKD--- 199

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             I +  D + +++    I      D LT + N+ +F+  L TI+D    + N R  +++
Sbjct: 200 GGILVFRDASVRQEMQSKINFLESHDPLTQLNNKNTFMSELATIIDRV-RNQNERYALLL 258

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DID+++ + DVLG  V D +L+     +   +   D++AR+ G+RF ++     +    
Sbjct: 259 VDIDRFQALYDVLGSYVSDQLLIQYAHFLQRTVAEQDVVARIGGDRFAVLKKVSTDQQAR 318

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + +S +        ++ +T S+G         +  ++   AE A   AK  G +
Sbjct: 319 GFAQWLVSESQSFEPVWHLEKVNLTVSVGVKIIEPGDESVDDVFLGAEKACGQAKAEGRS 378

Query: 691 HVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIV--GLEALIQW 744
             + +   +    ++  +      +  A+  +  +L    I  + + E      E L+  
Sbjct: 379 RFKVYNPLAPVYRKLNRQIRALPFIREALHRNLFFLRRQKICPVGNVEPHSDCYEVLLSM 438

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                 +++  EF+  AE   ++ +I+ +++      +    ++      F+ IN++ K 
Sbjct: 439 QLADGSSLAPEEFLTAAERYDLMPSIDRWVINHCFDWLEEDGERWKNLD-FMAINLSGKS 497

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D      ++  + +  +   +I    +E+  + N ERS   + R+++ G    LDDFG
Sbjct: 498 FNDPTFLAYLETKLRRATFPAEKICFEITETAAVENEERSVTFIHRIKRFGCRFALDDFG 557

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S   YL   P D +K +GS +    E      I+ SI  +A  +    +A+    + 
Sbjct: 558 SGMSSFRYLKNFPVDVIKIDGSFIVDMVENELSREIVTSIHNIASALGLKTVAEHAEDQQ 617

Query: 923 DIKELTRMGCDYIQDSHVASP 943
            ++ L  +G DY+Q   V  P
Sbjct: 618 TLQVLQEIGVDYVQGYVVEKP 638


>gi|17980444|gb|AAL50635.1|AF418998_1 bacteriophytochrome [Rhodobacter sphaeroides]
          Length = 1016

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 204/430 (47%), Gaps = 19/430 (4%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +++   +      D LTG+ NR    +RL         D      ++ ID+D++K +ND 
Sbjct: 585  QRTRAELARLRHYDPLTGLANRSYLQERLAQ-------DGQSAAALLFIDLDRFKAVNDS 637

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            +G  VGD +L+ + R +   ++  D++ RL G+ F ++     ++  I   A  +R+ + 
Sbjct: 638  MGHGVGDGLLIEVARSLVATVRPHDLVVRLGGDEFVVLCHRL-DAAGIVSLAERLRQVLE 696

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
             P  +  R+  ++ASIG A   S      ++++ A++AMY AK  GGN  E FR S    
Sbjct: 697  QPFEVAGRKCHISASIGIAMADSIGD--LDLVRAADIAMYAAKKNGGNRGELFRPSLYEE 754

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +  V +  D+  A+E+ + +LVY PI       E +VG EAL++WDHP  G +    F+
Sbjct: 755  TTQLVELDNDMRGAIESEQFHLVYQPIFALNPETERLVGFEALLRWDHPLHGALQPGIFI 814

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             +AE L  I A+  ++L R    + ++R       + + +N++   L   +    +  L+
Sbjct: 815  PLAERLGHIHAMGNWVLRRAILQLQAFRSAGPELDLKMNVNVSPLQLARPDFLARLADLL 874

Query: 819  SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++        + L  +E+ +    E     L  +R +G+ + +DDFGT  S L+ L  +P
Sbjct: 875  AQVPDLPRHALCLEITETSLSD--EAVSEALISIRALGVRIAIDDFGTGFSSLACLRRLP 932

Query: 878  FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D  K + + + G  +  +      ++  +    +  ++ + I     +  +   G D+ 
Sbjct: 933  VDVAKLDRAFLGGGHTAAQDHRFFAAVTGLVHAADLKVVQEGIETLDQLALVRAAGADFA 992

Query: 936  QDSHVASPLG 945
            Q  H+A+PL 
Sbjct: 993  QGFHLAAPLS 1002


>gi|114799436|ref|YP_758808.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114739610|gb|ABI77735.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 594

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/461 (23%), Positives = 209/461 (45%), Gaps = 18/461 (3%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +     + + ++  + +   A++D+ TG+PN  +   R+   L             +++D
Sbjct: 121 VATTRTVRKLRRENDHLRKIAYRDSRTGLPNALAAEKRIIETL--PGASFERPAAFILLD 178

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----------PDILARLSGNRFGIILI 622
           ID++  + + +G   GD ++ +  +RI + L              +LA L+ ++F + + 
Sbjct: 179 IDRFAHLVEQVGAGHGDMMIHAAAQRISKALSDVPDPSASALRGSMLAALTADQFTLFMP 238

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  +   +   A A+R +   P  +L R +T++ S G         +  ++++NA+LA+ 
Sbjct: 239 NAGSREHVIAIARAIRNAFNDPFTILGRPVTMSLSGGIVMAPEDADSPQKLMQNAKLALR 298

Query: 683 --HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
               + + G    + R++     R   + +L  AVEN E   V+ P I      IVG EA
Sbjct: 299 LVRNESQSGFRFFTPRLTRIVQGRYRFEAELRDAVENREFKAVFQPKIDFATGRIVGAEA 358

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +W       IS + F+ +AEE  +I+ I   +LE       +W  + +   + + +N+
Sbjct: 359 LARWRRSNGKLISPAAFIPVAEEAGLIEEIGKQILEAACEAARTWELEGHD--VTVAVNV 416

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +      N+L E +   + ++   P  ++L  +ES+ + +P R    +  LR +G  L +
Sbjct: 417 SPSQFQRNDLTETVMGALRRSGLHPRLLELEITESMAVSDPARVAEFISPLRAMGTKLAI 476

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+ L  +PFD  K +   ++     R   AI+  I+ MA+ +    +A+ +
Sbjct: 477 DDFGTGHSNLATLTQLPFDVFKIDRQFVSALETDRQAPAIVEMILAMAETLGLKTVAEGV 536

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
                   L R GC   Q    +  L   + L+LL+   PL
Sbjct: 537 ETTKQADFLRRRGCTMAQGFLYSPGLPDQAFLELLRAWKPL 577


>gi|114562595|ref|YP_750108.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333888|gb|ABI71270.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 777

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 199/426 (46%), Gaps = 13/426 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A+ D LT + NR      +   L            + +I+I +  +IN  LG AVGD+
Sbjct: 356 HQAYHDPLTNLGNRNELQRTIEPWLVA-----GSTMGLCLINIRRMTEINVTLGHAVGDE 410

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           V+  + +R+ E +    +  RLSG+ F +                 ++  I       + 
Sbjct: 411 VIKEVAKRLCE-VNPDALAYRLSGDEFVLAFKHC-EHQSFDVLLKKLQNQIGQDYRYQDV 468

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKE 709
            + +  + G + +  + +    +L+ A+ A+ HAK    ++      +     +R  +  
Sbjct: 469 MLHLQFTAGVSFYQPN-VDIVTLLRQADTALQHAKINKRDYQIYDANIDKNSIERFQLIN 527

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L +A+E ++L L Y P + L  ++I  +EAL++W+HP  G I    F+ IAE+   + A
Sbjct: 528 ELKVAIEQNQLVLYYQPKLNLAKQKITHVEALVRWNHPARGIIPPDTFIPIAEKTMQMDA 587

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++         W+       + I +NI++++L D + C  +   +++     + + 
Sbjct: 588 LTRWVITEAMDQYHRWQ--LLGINMCIAVNISAENLKDEQFCHWVINALAEHNVPVAAMT 645

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E  V+ +PE +   L  LRK G++L++DD+GT  S L+ L  +P D +K + S + 
Sbjct: 646 LEITEDAVVSDPELAVKQLTLLRKNGLTLSIDDYGTGYSSLAQLKQLPVDELKIDKSFVQ 705

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E    I++S + +A N+   ++A+ I  +  ++ LT++ C+  Q  +++ PL   
Sbjct: 706 KLLENEADQIIVQSTLQLAHNLGLKVVAEGIEDKATLEWLTKLNCEMGQGFYLSRPLPEQ 765

Query: 948 SILKLL 953
                L
Sbjct: 766 QFNDWL 771


>gi|330970143|gb|EGH70209.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 656

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 103/435 (23%), Positives = 211/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L   +  +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDAAMTEAMAQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  R+         ++RL G+ F +++  + +S  +  F   +   +  
Sbjct: 271 GHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDIDSEALQAFGKHLCDLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  + + +L +     +SW       P+ +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTVPLLTQALSMALSWPA-----PVRLSFNLSAHDCATWESVNRIVEIIEHS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + RK+G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFAETLAWIE 640


>gi|323956813|gb|EGB52547.1| EAL domain-containing protein [Escherichia coli H263]
          Length = 807

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 125/526 (23%), Positives = 227/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G  F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGASF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DEGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM   +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDFIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWYDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  L  +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILLDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           I L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 IGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ I  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGIETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCINEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKVWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|116250376|ref|YP_766214.1| GGDEF sensory box family protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255024|emb|CAK06098.1| putative GGDEF sensory box family protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 653

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 203/456 (44%), Gaps = 19/456 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K+               A  D LTG+ NR+SF   L   L     D +
Sbjct: 193 NFVGLVQLTEELKQKQAEAEELNLVNSRNALHDQLTGLANRRSFFLSLEKRL---QKDPS 249

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + ++D+D +K +NDV G A GD VL    RR   L+    I++RL G+ FGII   
Sbjct: 250 SPPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFVALVGEEGIVSRLGGDEFGIIFPC 309

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+   +  P  + +  + V  S G       + T+ ++ + A+ A+Y 
Sbjct: 310 SMTRQAIADLGQALCAVVRDPFEIPDGSVRVFGSCGIVYPDIGEYTAEDLYEKADFALYQ 369

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L       EL L Y PI+ L    +V  EAL
Sbjct: 370 VKSKRSSGVEFFSAEHEKILTQRHLIELELQANDFAKELKLDYQPIVELRSGRVVAYEAL 429

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS   F+  AE   +I  +   +  +    +           + +  N++
Sbjct: 430 ARWDSARFGRISPDAFIPAAERTAVIGRMTRILFAKALEALAIIPRH-----LRLSFNLS 484

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    + A+I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 485 ARDICDHETSMALLAMITRSGIDPRRIEFEITETALLSDFDTADQVITMLRAAGISIALD 544

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K + S +           I RS+  + +N+    +A+ + 
Sbjct: 545 DFGTGYSSLSHIHRLGFDKLKIDKSFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVE 604

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E   + L  +G    Q  H + PL     +     
Sbjct: 605 SEEIAEGLKAIGVRLAQGYHFSRPLPLELAIDYAAR 640


>gi|89092322|ref|ZP_01165276.1| Signaling protein (CHEY,EAL,GGDEF domains) [Oceanospirillum sp.
           MED92]
 gi|89083410|gb|EAR62628.1| Signaling protein (CHEY,EAL,GGDEF domains) [Oceanospirillum sp.
           MED92]
          Length = 744

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/434 (25%), Positives = 206/434 (47%), Gaps = 15/434 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +   A+ D+L GIPNR SF   +  ++  +A D      + +IDID +  IND LG  
Sbjct: 317 DRLHNYAYFDSLLGIPNRVSFARYIDKMMASAADDQ----LICLIDIDHFSGINDTLGTN 372

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD++L  + +R+ + L     ++R+SG+ FGI+  + N S +       + + +  P  
Sbjct: 373 TGDELLRLVAQRLTKNLPEGTFVSRVSGDTFGIMGSAHNLSPE------TVTELVEKPFT 426

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDR 704
           L   EI ++ + GF     + ++ ++ +K A +A+  AK   RG     +  +      R
Sbjct: 427 LFGDEIVISTTQGFYVLRDANVSGNDAIKRANIALKRAKDIIRGDAVEYTHEIEKETHQR 486

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +++ + L  A    EL++VY P I L   +I GLEALI+W       I   +F+ +AE  
Sbjct: 487 MLMLQGLRKAHAEHELFMVYQPQIDLNTGKINGLEALIRWKTHNGTMIPPDQFIPVAESS 546

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++    RD+    +      + + INI+            ++  ++K   S
Sbjct: 547 GLIVQLGEWIMCSALRDL-EHLENRYALGLQMGINISPVQFRHPNFLNTIKTELNKFNLS 605

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            ++++   +ESV M + +  R  L ++  +G  + +DDFGT  S LSYL  + FD +K +
Sbjct: 606 RNQVEFEITESVAMMDIDTVRATLKQIHDLGAQVAIDDFGTGFSCLSYLETLHFDRLKID 665

Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +   + +     I   II + ++++ ++IA+ +  +  +  L  + C   Q      
Sbjct: 666 KSFIDKMSNENAGTYIPEMIINLGRDLDMSVIAEGVETQEQVSRLKGLNCFEAQGYFFGK 725

Query: 943 PLGFNSILKLLKER 956
           P+   S+   L   
Sbjct: 726 PMDMKSLEIWLDGH 739


>gi|262173994|ref|ZP_06041671.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261891352|gb|EEY37339.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 632

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 226/525 (43%), Gaps = 17/525 (3%)

Query: 438 LGLASGSMHGPI---RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           L   +G + G +        + H  D+   R   +S     +   Q E  ++   +    
Sbjct: 111 LQWPNGDLFGTLCATDRREHHFHATDQQLIRAFRESIEAQLKTLYQRETLLQMNQDLHFK 170

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +++ +++ N  +        +I +++ + + I      D  TG  NR +   +L  +
Sbjct: 171 VRNKMQSIASLNQSL------HQEIDKRRAAEQQIEYQRSHDVGTGFLNRSALEHQLDEL 224

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L      D     V+ I     +++   LG  + DDVL  L  RIG ++    I AR + 
Sbjct: 225 LT--QLGDTCELAVLHIGFANVRQLQARLGYHLWDDVLKQLRERIGPIIDAELITARPTS 282

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               ++L S      +      +         +    + +   IG A    +     ++L
Sbjct: 283 TNLTLVLKSTQLDTHLNLLCHKLIHVGQAQFQIEGVTVHLNPYIGVALSRETH-DPQQLL 341

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +A  +M   K  G      S  ++   + +  ++  L  AV N++L L + P + +  +
Sbjct: 342 SHAVSSMIACKDSGYKVFFHSPAIADDHARQNQLENYLLHAVRNNDLMLYFQPKVSVKTQ 401

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W HP  G  S+   + +AE+  +I  +  F+L +  +    W      P 
Sbjct: 402 HWVGAEALLRWKHPVLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLS--ICPT 459

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++S  L ++   E +  L++   +   +++L  +ES ++ +   +  +L RL  
Sbjct: 460 FRIAINVSSVQLKNSRFVEQIHDLLTFYHFPAHQLELEITESGLIVDEPTAIDILNRLHG 519

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G++L+LDDFGT  +   YL   PFD +K + S +     +E    I+RSI+ +AK ++ 
Sbjct: 520 LGVTLSLDDFGTGYASFQYLKKFPFDGIKIDKSFLEQIEHSENDQEIVRSILHVAKKLKL 579

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ I  +   + +   GCD  Q      P+  ++  + LK+ 
Sbjct: 580 KVVAEGIETKQQEQFILEHGCDIGQGFLYGRPMPSDAFEQKLKQH 624


>gi|170743553|ref|YP_001772208.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168197827|gb|ACA19774.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 669

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/432 (25%), Positives = 192/432 (44%), Gaps = 11/432 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +   E     A  D+LTG+PNR+ F   L  + D     +     + + D+D +K IN
Sbjct: 230 EMRLLAEENFRLAHTDSLTGLPNRRYFFAALDGLRDGPDRAE---LALAIFDLDHFKSIN 286

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G + GD VL    RR+G L      +ARL G+ FG ++ +      +A F   +   
Sbjct: 287 DSYGHSAGDRVLAETGRRLGSLAGKAVRVARLGGDEFGALIDARALGRDVAAFCREVSDL 346

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P    +  ++   S G A  +++    + +  +A+ A+Y +K      V  +     
Sbjct: 347 LRQPFRAGDILLSPGCSCGVAFASAADRDGAALFDHADHALYQSKQHRRGAVTVYSKEQD 406

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++  L  A   +EL L Y P+  L    +  +EAL +W  P  G +  S F+
Sbjct: 407 DLIQAERAVEAALQAAGLEAELELHYQPVYDLASGSVRTVEALARWRSPLLGAVPPSRFI 466

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  + L +LE+   +I             +  N++S DL   E  + + ALI
Sbjct: 467 PVAERCGLIHRLTLLLLEKALGEIDHLPQAVG-----LSFNLSSHDLSSPEATDAIVALI 521

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++  +PSR+    +E+ +M + E +   +G+LR +G  + LDDFGT  S L Y+  +  
Sbjct: 522 LRSGVAPSRLTFELTETALMADLEAAGRSVGKLRALGSRIALDDFGTGHSSLGYVHRLGL 581

Query: 879 DTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + S +         AI+++I+ +   +    +A+ +  E  +  L   GC  +Q 
Sbjct: 582 DRIKIDRSFVASVDTPTGEAIVKTILHLCTYLGLECVAEGVETEEQLDRLRGFGCRLVQG 641

Query: 938 SHVASPLGFNSI 949
             +  P     +
Sbjct: 642 YLLGKPAPLREL 653


>gi|159036526|ref|YP_001535779.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
 gi|157915361|gb|ABV96788.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
          Length = 842

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/740 (20%), Positives = 274/740 (37%), Gaps = 59/740 (7%)

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARI 313
              +   L   L       L  NR   +V  I  S     A+   ++        +    
Sbjct: 102 WIPAATLLGVGLAWSGMSLLGANRPPLEVVRIASSLTVTTALAVSVTTLLGRPLLAAPTP 161

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
            L   V+      +            L     +  +    L   +   + N ++   +V 
Sbjct: 162 PLVLAVVAGAVTYLLASAWLGAVNATLHHGVPIGVLLRPALRGKLLMFVGNVVVGLVVVA 221

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ-------------------------- 407
            + +    +        L    +   + +D ER+                          
Sbjct: 222 LIEVDPRWLLVLPPPLWLLQQTYRHRLRADRERRSWRAFAEATGALNKLDERGVATAAVS 281

Query: 408 -SLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
            +L +  +  +  D  +   R R         +     G++     +        D    
Sbjct: 282 GALTLFQAESVTVDVAYGDGRRRRYWGDAAGQLFDREVGALDATAGDER------DLARS 335

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            T+  + VG+ R RL         D             +  +    R         E +K
Sbjct: 336 LTVGTAEVGHLRVRLPCAVPPTDRDRDAFAAYSDALAAALHDAATHR---------ELRK 386

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   A  D LTG+ NR + L +    L   A D      ++++DI+++K++ND LG
Sbjct: 387 VAARSSYEAVVDALTGLVNRAAMLSKGDQALRQLARDR--PVALLLLDINRFKEVNDTLG 444

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-------IADFAIAM 637
            A GD +L     R+G L    D+L RL G+ F ++L S                 A  +
Sbjct: 445 HAAGDQLLRLTADRLGGLTHGGDLLGRLGGDEFALLLTSVPVIGDRTAPLAYTLRQAREI 504

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFR 696
            + +A P  +    ++V AS+G     +     +E+L+ A++AMY AK   G        
Sbjct: 505 TERLAAPTEVAGVRMSVEASVGVVVAGAGTADMAELLRRADIAMYQAKEGSGSVAAYDST 564

Query: 697 VSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +DR+ +  +L  A   + +L LV  P + L      G+EALI+W HP+ G ++  
Sbjct: 565 RDAASTDRLALLAELREALAADDQLVLVLQPAVDLATGAPTGVEALIRWRHPRRGWLNPH 624

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+   E    +     ++L++       W        + I +N++++ LLD  L   + 
Sbjct: 625 EFIRPVENSEQLGTFTRYVLDKALGLAAQWARDGLD--LPISVNLSARSLLDPRLPAEIA 682

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +      R+ L  +E+VVM   E    +LG LR +G+ L +DDFGT  S L++L  
Sbjct: 683 EALRRHQVPARRLVLEITETVVMSELEVIDEVLGTLRTMGVQLAVDDFGTGFSSLTFLTR 742

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           I  D +K + S +     + +  AI+R+ + +A+ +   ++A+ +        L  +GC 
Sbjct: 743 IAVDELKVDRSFVIRMADSPEAAAIVRTTVGLAQQLGLRVVAEGVETAEQRSALAELGCT 802

Query: 934 YIQDSHVASPLGFNSILKLL 953
             Q      P+  + I  +L
Sbjct: 803 AAQGYLFFKPMPADKIGAVL 822


>gi|89091855|ref|ZP_01164810.1| GGDEF domain/EAL domain protein [Oceanospirillum sp. MED92]
 gi|89083590|gb|EAR62807.1| GGDEF domain/EAL domain protein [Oceanospirillum sp. MED92]
          Length = 578

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 208/447 (46%), Gaps = 13/447 (2%)

Query: 526 LEGILCNAFQDN--LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +       +D+  LT + NRQSF  +L   L     +   +  ++ +D+D+++K N   
Sbjct: 134 KQHHEIQVLRDSDMLTMVSNRQSFYLQLKNKLAQQNANKR-QLVLITVDLDEFRKFNSHY 192

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL---KIADFAIAMRKS 640
           G + GD V++ +  RI   ++  +I+ARL  + F ++L     +       D+   +   
Sbjct: 193 GFSTGDRVVLEMGSRIQSTIRADEIVARLGSDEFAMLLDLPPEADLKRTTKDYLNKLLTC 252

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
           +  P      E  +  SIG            ++ + A  A  +AK   G     +R  + 
Sbjct: 253 LDQPYCHGNIETRIHCSIGVTFAPEHSSEIDKLTRFATHARMNAKQVHGCSYAYYRPGME 312

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R  +  D+  A+  ++  L Y P I L   EI G EALI+W+HP  G +  S+F+
Sbjct: 313 ENADNRTELGADMTRALHLNQFELYYQPRIDLGSGEITGAEALIRWNHPVHGLVMPSDFI 372

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            ++E   MI +I  ++L +  + + + R++       + IN++ +   D+ L E ++ +I
Sbjct: 373 PLSERNGMIVSIGYWVLYQAGKHLKALREEGLSIN-RLGINLSFRQFKDDRLVETIKRII 431

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +     S ++   +ES +  + E  R  L  L + GI+ +LDDFGT  S  S L  +P 
Sbjct: 432 KQEEIDTSVLEFELTESAIFSDEEHVRSCLTSLAEEGITFSLDDFGTGYSSFSLLHKLPI 491

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S ++   E   A  I+RSII + +N+   +IA+ +     ++ L +  CD IQ
Sbjct: 492 SALKIDRSFVSQVNESSEAAEIVRSIISLTQNMSIKVIAEGVETRQQLEFLIKHDCDEIQ 551

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
               + P+ F    ++L +  P  K +
Sbjct: 552 GFFFSPPVPFADFKRMLSK--PGKKAS 576


>gi|295699912|ref|YP_003607805.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295439125|gb|ADG18294.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 657

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 98/435 (22%), Positives = 217/435 (49%), Gaps = 10/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  +     A  D+LTG+PNR+S+   L+ IL+ +         V +ID+D +K++ND+
Sbjct: 215 QRLSDDNYRLANIDSLTGLPNRRSYFAALSAILEQALETGGG-FNVGLIDLDGFKQVNDI 273

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  +  R+  + +   + ARL G+ FG+++  + ++  + +    +  +++
Sbjct: 274 YGHASGDLVLQEVGTRLVSISETGLMFARLGGDEFGVLVRHKLSNEALVELGQRICDALS 333

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  + +    ++ +IG+A++  +  T +++ + A+ A+Y  K         F       
Sbjct: 334 QPYQVADNVAELSGTIGWAAFPDAGSTVAQVFERADAALYVGKENRRGMPVIFSTEHETQ 393

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R +  + ++L  A   +EL+L + PI  L+    +GLEAL +W + + G +   EF+ I
Sbjct: 394 MRRLSLVTQELRHADLEAELFLEFQPIYDLLTHRPIGLEALGRWHNARLGMVRPEEFIRI 453

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I   +L +   ++  W        +++  N+++ D+  +     +  +++ 
Sbjct: 454 AERTELILGITDVLLRQALAEVAHWPA-----DLYLSFNLSAIDISTSARARRLIDIVAA 508

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +  SP R+    +E+ +  +  ++   +  L++ G  ++LDDFGT  S LSY+  +PFD 
Sbjct: 509 SGVSPHRVTFEITETALTRDFAQAHSAMTMLKQAGCRMSLDDFGTGYSSLSYVHRLPFDA 568

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S ++       +  I++S+I + +N+    + + +   +  + +  +G   +Q  
Sbjct: 569 IKIDRSFVSDVDTNSASKKIIKSVIDLCRNLGLECVVEGLETPLQAQVVKALGARAVQGY 628

Query: 939 HVASPLGFNSILKLL 953
             + P+  +++   L
Sbjct: 629 LFSLPMRASAVGTFL 643


>gi|296156546|ref|ZP_06839384.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295893145|gb|EFG72925.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 657

 Score =  386 bits (992), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 212/435 (48%), Gaps = 10/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  +     A  D+LT +PNR+SF   L   L   A        V +ID+D +K++ND+
Sbjct: 215 QRLSDDNFRLASIDSLTDLPNRRSFFASL-RALSEQALSSGGGFNVGLIDLDGFKQVNDI 273

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  +  R+  L +     ARL G+ FG++   +  +  + +    +  +++
Sbjct: 274 YGHASGDLVLQEVGSRLLSLAEPGIFFARLGGDEFGVLAQHQLANETLVELGQRICGALS 333

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +      ++ +IG+A++  +  T +++ + A+ A+Y  K         F       
Sbjct: 334 QPYRVAGNIAELSGTIGWAAFPEAGTTMAQVFERADTALYVGKESRRGTPVIFSTEHETR 393

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    + ++L  A   SEL+L + PI  ++ +  +GLEAL +W + + G +   EF+ I
Sbjct: 394 IRRSSLVTQELRHADLESELFLEFQPIYDVLAQRTIGLEALGRWHNARLGAVRPEEFIRI 453

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I   +L +   ++  W  +     +++  N+++ D+  +     +  ++  
Sbjct: 454 AERTELILRITEVLLHKALAEVARWPSE-----LYLSFNLSAIDICTSARARRLIDIVMA 508

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P R+    +E+ V  + E++R  L  ++K G  ++LDDFGT  S LSY+  +PFDT
Sbjct: 509 SGVPPHRVSFEITETAVTRDFEQARCSLTVIKKAGCRVSLDDFGTGYSSLSYVHRLPFDT 568

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S MT       +  I++S++ + +N+    + + +     ++ +  +G   +Q  
Sbjct: 569 IKIDRSFMTDVDSNSASKKIVKSVLDLCRNLGLECVVEGLETASQVEVVKALGARAVQGY 628

Query: 939 HVASPLGFNSILKLL 953
             + P+  +++ + L
Sbjct: 629 LFSRPMRASAVAEYL 643


>gi|330891059|gb|EGH23720.1| GGDEF domain-containing protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 463

 Score =  386 bits (992), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 212/430 (49%), Gaps = 13/430 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L+      + +  V +ID+DK+K IND  G AVGD  
Sbjct: 33  LARHDPLSGLLNRRVFHEQLVARLEQ----PSSQTAVFLIDLDKFKLINDSHGHAVGDAA 88

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + E        +ARL G+ FG+ +  +   +++A  A ++   IA   +    
Sbjct: 89  ICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATLAESVLAKIAAS-SADLP 147

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            + ++A++G A        +  +L++A+ AMY  K+ G      + VS  R  R      
Sbjct: 148 RLALSATLGIAISPLDGSDADILLQHADSAMYRGKNGGRATFNFYEVSFEREQRQQELFA 207

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E++++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 208 QELRQAIEHNQIQPFYQPIVNLPEQRLAGFELLARWLHPERGTIMPLDFIPVAEQLGLIK 267

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  + +  + S+  +  SR+
Sbjct: 268 QLTESLLLQAFDQARDWPS-----DFTLSINVTSLMIESVDFPDWLAHVASEGQFPLSRL 322

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 323 EVEVTENALVANIDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 382

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 383 DTSLDNQNEMVKAILALGKSLRMKITAEGVEHEELADWLASHECDFAQGYLFGRPLPLAQ 442

Query: 949 ILKLLKERFP 958
           +  LL    P
Sbjct: 443 VTALLAMAEP 452


>gi|269959435|ref|ZP_06173818.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835872|gb|EEZ89948.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 848

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/432 (24%), Positives = 204/432 (47%), Gaps = 13/432 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +RQ  ++ ++  L  S        ++ +I I+K++ IND
Sbjct: 416 LKASFKALREQLEFDSLTRLYSRQGLIE-VSEALTHSGQ-----GSLYLIGINKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD +L+ +  R+ + L     LAR+ G+ F + + + ++   I+     +++ +
Sbjct: 470 SIGHHNGDQLLIHIAERLKQQLHDEATLARIGGDEFAVFMPTTHSDEDISLMERRLQQLL 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  L   E  V         T  + T S  L+NA +A+ +AK      V  +      
Sbjct: 530 AAPFMLDG-ETVVVKISVGVVRTQPEQTMSLWLRNASIALSYAKQDSRTSVCHYSPEMAS 588

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +   +   ++N E    Y PII L    I G EAL +W H + G IS  +F+ 
Sbjct: 589 ASKFRTQMLAKIQTGIDNREFVPFYQPIIDLATGNICGAEALARW-HSESGMISPLDFIP 647

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALI 818
           IAEE  MIK I   +L +   D     D    P    + +N++   L      E +  ++
Sbjct: 648 IAEESGMIKTIGQQILFQACSDTRKAIDNKQWPQDFQLHVNVSVHQLSSPNFVESVAKVL 707

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T  + + + L  +ES ++ +   +   L +LR++G+ + +DDFGT  S L+YL  +PF
Sbjct: 708 RTTGLAANNVTLEITESRIIDSAPTTLDNLLKLREMGLGIAIDDFGTGYSSLAYLHALPF 767

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +   T++    +++ +II + K ++T ++A+ +      + L+ +GC+ +Q
Sbjct: 768 TCLKIDRTFINRLTKENLDSSVVAAIINITKGMKTNVVAEGVETAAQAQLLSSLGCNQVQ 827

Query: 937 DSHVASPLGFNS 948
             + + P+    
Sbjct: 828 GFYYSRPMPMEE 839


>gi|296117223|ref|ZP_06835816.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295976318|gb|EFG83103.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 572

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/543 (23%), Positives = 244/543 (44%), Gaps = 12/543 (2%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474
            IV   D              +   ++  + G     L    H  D   F+ +  +    
Sbjct: 28  LIVAITDRDGVITYVNDKFCKVSKYSAKELLGSTHRLLNSGYH--DAAFFQEMYRTIQAG 85

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +    +     RA D   +W+   I P  +  G++  Y+    +ITE  K+ E +   A 
Sbjct: 86  Q--PWRGNICNRAKDGTIYWVATTIIPKCSPTGEVEGYVASRFEITELMKTKERLSELAE 143

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT + NR  F   L+  L LS+ +      +++ D+D +K+IND+ G   GD VL  
Sbjct: 144 TDTLTALLNRGGFNTALSAALGLSSKEPPQSRALVMFDLDGFKQINDIHGHHAGDIVLRV 203

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +  R+ EL    D ++RL G+ F I+L     S+ +  +   ++ ++  PI++    +++
Sbjct: 204 VASRLVELTDPDDPISRLGGDEFAIVLNKTLRSVPLEKYMDRLQAALERPIDIETVTVSI 263

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           + SIG A +  ++ +  +M KNA++A+Y AK  GG   + F          R  I  +  
Sbjct: 264 SGSIG-AVFLDARESVEDMQKNADMALYAAKRAGGKQAQMFTSALRHRAQVRTQILIEAR 322

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             V+N +  + Y PI+     ++  +EAL++W HP+ G +++ +F  +  +  + +A+  
Sbjct: 323 SGVKNGQFEVYYQPILNCHTCQLDQIEALLRWHHPERGLLAAEDFADVFTDSTLTQAMGP 382

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            M+    RD+  W      PP  + IN++  DL   E    ++  +     SP+   L  
Sbjct: 383 SMIASFQRDVEMWNR-TGQPPRQLAINMSRMDLGRAEYRVELEQSLRDFGLSPANFVLEV 441

Query: 833 SESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           +E ++     E+S   +  L   G  + +D+FG   ++L +L  +PF+ +K + SL+TG 
Sbjct: 442 TEPMLQGRRAEQSMHNIRELGAAGFQIAMDNFGKGETMLRHLRDLPFNQLKIDQSLVTGI 501

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   +L S+I + +     +  + +      + +  M  D +Q   ++  L   ++
Sbjct: 502 VDNAGDREVLASLIGLGQVYGLEVTVEGVETRAQFEIVHMMKPDRVQGFFISPALSSQAL 561

Query: 950 LKL 952
           LKL
Sbjct: 562 LKL 564


>gi|254283955|ref|ZP_04958923.1| signal transduction protein [gamma proteobacterium NOR51-B]
 gi|219680158|gb|EED36507.1| signal transduction protein [gamma proteobacterium NOR51-B]
          Length = 764

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 218/450 (48%), Gaps = 17/450 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  ++ + +   A  D LT +PNRQ   ++L T++ ++   +     ++ +D+D  ++IN
Sbjct: 307 EVNETQQKLQRAANYDALTDLPNRQLMTEQLNTLMRIAER-ERKHVGLVFVDLDNLRRIN 365

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILAR---------LSGNRFGIILISENNSLKIA 631
           + LG  +GD VL   ++R+    +  D++ R         +  + F I+L    NS  + 
Sbjct: 366 ETLGREIGDQVLRQFSKRLVTATRNSDVVGRNGDNRDVSRVGTDEFSIVLHGIENSEDVH 425

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   +  P+++  + + +   +GFA          ++++ A++A+ HAK+     
Sbjct: 426 TTARRILDELNHPLDVDGQILPMQCVMGFAVAPQHGRKPQDLMRAADIALTHAKNERSRT 485

Query: 692 VESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            E + +   +  S R  ++ +L  A  ++EL L Y P I      +VG EAL++WD+P  
Sbjct: 486 PEIYNLKIDQAGSIRFQLEGELRAADFDAELQLHYQPQIDTEKGTVVGAEALLRWDNPNR 545

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +F+ IAE+  +I  I  +++ +   D  ++      PP  I +N+++  L D  
Sbjct: 546 GMVPPFQFIPIAEDSGIIIEIGDWIIRKACEDFQTFERAGVAPP-KISVNVSALQLSD-R 603

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR-KIGISLTLDDFGTKCS 868
             + +   + +T   P+R +L  +ES ++ + + +   L RL  ++G+ L++DDFGT  S
Sbjct: 604 FIDLVAETLRQTAMDPARFELELTESSLVADVDGTLAKLQRLHSEVGVRLSVDDFGTGYS 663

Query: 869 LLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL   P + +K + S +    +      +  +II MA+ +E  I+A+ +      K 
Sbjct: 664 SLAYLAKFPLNELKVDRSFVVAMENDANSAKVTGAIIAMARELELEIVAEGVDNPNQFKM 723

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L   G   IQ    + PL      +  +ER
Sbjct: 724 LQDFGAHVIQGFIFSKPLDPEYFQEFSRER 753


>gi|302187355|ref|ZP_07264028.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 656

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/435 (23%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L   +  +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDAAMIEAMAQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  R+         ++RL G+ F +++  + +S  +  F   +   +  
Sbjct: 271 GHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDMDSDALLTFGKHLCDLMHG 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  +     
Sbjct: 331 SFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSATHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  + + +L +     +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTVPLLTQALSMALSWPA-----PIRLSFNLSAHDCASCESVNRIVEIIKHS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + RK+G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG         I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHHNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFAETLAWIE 640


>gi|218708181|ref|YP_002415802.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218321200|emb|CAV17150.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 857

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 200/446 (44%), Gaps = 13/446 (2%)

Query: 508 DILRYIGIANDITE-QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +I       N++T   K S + +      D+LT + +R+ F+D            +N + 
Sbjct: 400 EISMLTASFNEMTNNLKASFQALQAQLTYDSLTKLYSREGFID------TAKKNPENEKG 453

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           T+ +I ID+++ IND LG   GD +L+    R+   L    +LAR  G+ F I   + N 
Sbjct: 454 TLYLIGIDRFRDINDSLGHYNGDQLLIIAAARLRGTLPSNFLLARTGGDEFAIYAPNINQ 513

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +      + +    P  +    + +  S+G  + + +    + +L+N+ +A+ +AK 
Sbjct: 514 IDDVQLLTSRLLRIFTSPFAMESESVVIKVSMGVVNVS-NVNDITLLLRNSSIALSNAKQ 572

Query: 687 RGGNHVESFRVSSFRSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              +           S     +   L  A++  +    Y PII L     +G EAL +W 
Sbjct: 573 DKTSVSIYNPEMGKASRYRTKMLARLNKAIDLQQFEPFYQPIIDLESGATIGAEALARWV 632

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKD 804
               G IS  EF+ +AEE  +I  I   +L +  RD     +         I +N++   
Sbjct: 633 T-DEGIISPLEFIPLAEETGLIYDIGKQILHKSCRDTAIAIESGKWNKDFSIHVNLSVDQ 691

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L ++   E ++  +  T      + L  +ES ++ N +     +  L+ +GIS+ +DDFG
Sbjct: 692 LSESGFIELVKTTLRDTKLPAQNLTLEITESRIVDNDQTIIDNMLTLKALGISIAIDDFG 751

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL  +PFD +K + S ++   ++    +I+ +I+ + K  + +++A+ +  + 
Sbjct: 752 TGYSSLAYLHKLPFDCLKIDRSFVSKLEKENLDSSIVAAIVNITKGFKVSLVAEGVETQQ 811

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNS 948
             + L ++ C   Q    + P+ F+ 
Sbjct: 812 QAELLKQLQCPLAQGFLYSRPVPFDQ 837


>gi|109896855|ref|YP_660110.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109699136|gb|ABG39056.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 608

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 204/457 (44%), Gaps = 24/457 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+ +K   E +    +QD LTG+PNR+     L ++L  +         V  ID+D++K 
Sbjct: 154 ISNRKAVEEQLRLQTYQDVLTGLPNRKMLNINLQSLLTNAQQHGQY-GAVFFIDLDRFKL 212

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADF 633
           IND LG +VGD++L+++T ++   ++  D LAR+ G+ F ++L     + +         
Sbjct: 213 INDTLGHSVGDELLINITSKLKACIRRDDTLARVGGDEFILLLGDIGPTEQSAVGKATKV 272

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSS--------KITSSEMLKNAELAMYHAK 685
           A  M       I L    +  + SIG A + S            + +++K+A++AMY  K
Sbjct: 273 ADKMLSLTRDSIELSRCAVFTSFSIGIALFPSPELNANKSIAEQAKQLIKHADIAMYKIK 332

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           H   N    +R            +++ L +A+      L + P++ +   EIV  E L++
Sbjct: 333 HTSRNDYLFYRHELQIMATFRSEVEQRLHVALREEAFELYFQPMVNVA-GEIVAAEGLLR 391

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIAS 802
           W   K G +   EF+ +AEE  +I  I  ++L +    I    D  +   +  I INI+ 
Sbjct: 392 WHDEKLGWVGPQEFIPVAEECGLIVEIGQWVLRQTCVLISQHLDWFSEGNLRYISINISP 451

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL--RKIGISLTL 860
           +          +  +I +  +  S ++L  +E V M N   +  ++  L   ++     L
Sbjct: 452 RQFSQPHFVAQVLEIIEEFTFPHSYLRLEITEGVAMENITSAIYIMNALIVHEL-F-FML 509

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S LSYL  +P  +VK + S ++   +      I+ +II ++++     + + +
Sbjct: 510 DDFGSGYSSLSYLHQLPLKSVKIDRSFVSKIDQNTDNQVIVEAIIYISQHFSLECVVEGL 569

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               +           IQ  H   PL   + + LL+ 
Sbjct: 570 ETSQEHAYFHEKDVAAIQGFHFYKPLPREAFVNLLES 606


>gi|289646264|ref|ZP_06477607.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 656

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T L  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTALQEA-LAQRTGLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 271 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFALVIKGDISNDALLAFGKHLCELMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 331 SFELSDMSIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFEQTLVWIE 640


>gi|298486953|ref|ZP_07005006.1| GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158515|gb|EFH99582.1| GGDEF domain/EAL domain protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 656

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T L  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTALQEA-LAQRTGLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 271 GHRTGDRLLMLVAERLTSAFSDTVHVSRLGGDEFALVIKGDISNDALLAFGKHLCELMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 331 SFELSDMSIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFEQTLVWIE 640


>gi|254491657|ref|ZP_05104836.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463135|gb|EEF79405.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 605

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 97/432 (22%), Positives = 173/432 (40%), Gaps = 13/432 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K     +  +   D+LTG+ NR+     L   L     +      +  ID+D +K +ND
Sbjct: 175 LKVMEARLQFSVSHDDLTGLANRRRLEQALELSLTQV-RNFMSTSALFYIDLDSFKVLND 233

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +LV +   +    +  D L R+  + F +++ + +  + I           
Sbjct: 234 AEGHEAGDTLLVQVANSLRRYFRVNDTLVRIGSDEFAVLVDNTDKKMAIQQAEGLRNLFD 293

Query: 642 AMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                       ++ASIG          T  E+L +A  A Y AK RG N V  +     
Sbjct: 294 GYSFEHHGHHYHLSASIGIKLIQRQDATTVGEVLSHANQACYTAKKRGRNRVHLYSPEDR 353

Query: 701 RSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +         +  A++     L + PI  L    I   E LI+            E
Sbjct: 354 EMHTLRHSVEWAPRIRAALKEENFLLEFQPIFALDSGAITHYECLIRMRGDGGVVYYPKE 413

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE + +I  I+ +++ +    +    D      I   +N++    LD  L   +Q 
Sbjct: 414 FIPVAEAMGLIHQIDFWVVAKAFDLLCGMPDS-----ISFAVNLSGNVFLDENLYRLIQQ 468

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +T   P RI    +E+  + N E+++ ++  LR +G    LDDFG   +  SYL + 
Sbjct: 469 KLKETEIDPERIVFEITETSAISNFEQTKRMVTNLRSLGCRFALDDFGAGFNSYSYLKHF 528

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K +G  +T          +++S+I +A ++    +A+ +  E  +  L   G D+
Sbjct: 529 PVDILKIDGGFITDLDNDPVDQLLVKSMIDIAHSLGKKTVAEFVERESTLNLLKGYGVDF 588

Query: 935 IQDSHVASPLGF 946
           +Q   V  P   
Sbjct: 589 VQGYLVGKPQSI 600


>gi|319944181|ref|ZP_08018457.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Lautropia mirabilis ATCC
           51599]
 gi|319742476|gb|EFV94887.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Lautropia mirabilis ATCC
           51599]
          Length = 623

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/461 (21%), Positives = 203/461 (44%), Gaps = 23/461 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E   +       A +D LTG+ +R +F+ +   +L            +M++DID++++
Sbjct: 152 LSESLDAFRSQREQANRDPLTGLFSRAAFMQK-GQMLLRRRRPAGHVAAIMMLDIDRFRR 210

Query: 579 INDVLGIAVGDDVLVSLTRRIGELL----------------KFPDILARLSGNRFGIILI 622
           IN+  G   GD VL  +   +                        +++RL+G+ + ++  
Sbjct: 211 INEAFGQRAGDRVLQHVADSLRHAFRNLTQADPAKAGDDLDMPDLLISRLTGDEYALVFS 270

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +  N       A  ++  +     +   ++ +  SIG A +         +L  A++AM 
Sbjct: 271 NLPNEDTARKAAEIIQAHLRRAFQIDGLDLMLRTSIGTAWFPRHGRNFEMLLAKADVAMS 330

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            A+ +GGN +  +  +          ++  L   ++ +EL L Y PII      +VG+EA
Sbjct: 331 VARQQGGNRLLVYDDAYGEQLRGDFELQSALATVLDRNELVLHYQPIIDTRYNRVVGVEA 390

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W       +S  +F+ +AE+  +   +  + +    + +  W+      P  + +N+
Sbjct: 391 LMRWMRGS-QMLSPGKFIPLAEDSGLDFRMGEWAISEALQQLRRWQLAGVPIPG-VSVNV 448

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + + L    L    Q  +  T    S + L  +E  VM + E     L  L+K GI + L
Sbjct: 449 SVRHLRQPTLLRSAQQALEATEIPASALTLELTEIDVMRDIENVLPTLWELKKAGIRIAL 508

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S +SYL  +P DT+K +   ++       ++ ++RSII +A  ++  II + +
Sbjct: 509 DDFGSGFSSVSYLTRMPVDTLKIDRVFISELENDVGQLKVVRSIIALAGALDLQIIGEGV 568

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
               ++  L ++GC  +Q    + P+    + + L E   L
Sbjct: 569 ERTEEMTTLQKLGCQDLQGYLFSKPMTAAQLERWLMENPSL 609


>gi|66045947|ref|YP_235788.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256654|gb|AAY37750.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 656

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 212/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMTEAMAQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  R+         ++RL G+ F +++  + +S  +  F   +   +  
Sbjct: 271 GHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDIDSEALQAFGKHLCDLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  + + +L +     +SW       P+ +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTVPLLTQALSMALSWPA-----PVRLSFNLSAHDCATWESVNRIVEIIEHS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + RK+G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFAETLAWIE 640


>gi|16127626|ref|NP_422190.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|221236443|ref|YP_002518880.1| GGDEF/EAL diguanylate cyclase-phosphodiesterase [Caulobacter
           crescentus NA1000]
 gi|13425106|gb|AAK25358.1| GGDEF family protein [Caulobacter crescentus CB15]
 gi|220965616|gb|ACL96972.1| GGDEF/EAL diguanylate cyclase-phosphodiesterase [Caulobacter
           crescentus NA1000]
          Length = 555

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/555 (24%), Positives = 239/555 (43%), Gaps = 36/555 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   +W W+   DR+      A  LGL   +       +       DR     +L 
Sbjct: 19  ALGAADVALWIWEPETDRLRLN-GAARALGLGPLAPECSSAAFRALALPQDRAQAEEVLK 77

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                    +   FRVR  +    W     R +    G  +R  G+         + E  
Sbjct: 78  P--REPGSEVVARFRVRGGE-TCLW-----RGVWLEEG--VRAAGVV--------APETK 119

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              +   +LTG+ +R+SFL R    L    T       ++V D+D+ +++N+ LG    D
Sbjct: 120 FSASELCDLTGLLDRRSFLARARERLAQEGTHQ-----LVVADLDRLRRLNEALGHERAD 174

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL +L  R+        IL R+  + F ++             +  +R ++  P+ +  
Sbjct: 175 LVLAALGSRLAAAFPAQSILGRIGEDEFAVLCQPLGYEP-----SDVLRSALEQPLRVAG 229

Query: 650 REITVTASIGFASWTS--SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
            +I  T SIG  S         ++E+L+ AELA+  A   G     ++  +       R+
Sbjct: 230 FDIHPTLSIGAVSAEGGLDAPDAAELLRRAELAVEAAAAAGRGGAAAYGRAMETDGLSRL 289

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A+   E+   + PI+RL    + G EAL +W HP+ G +   EF+ + EE+ 
Sbjct: 290 ALEADLRGAIGRGEITPYFQPIVRLSTGALSGFEALARWIHPRRGMLPPDEFLPLIEEMG 349

Query: 766 MIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYS 824
           ++  +   M+   A+ + +WR        + + +N+++ ++    L   +   +      
Sbjct: 350 LMSELGAHMMHAAAQQLSTWRAAHPAMGNLTVSVNLSTGEIDRPGLVADVAETLRVNRLP 409

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +KL  +ES +M +PER+ ++L  LR  G  L LDDFGT  S LSYL  +PFDT+K +
Sbjct: 410 RGALKLEVTESDIMRDPERAAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKID 469

Query: 885 GSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +   G+      I+RS++ + ++++  ++A+ +        L  +GCDY Q    A 
Sbjct: 470 RYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVVAEGVENAEMAHALQSLGCDYGQGFGYAP 529

Query: 943 PLGFNSILKLLKERF 957
            L        L E +
Sbjct: 530 ALSPQEAEVYLNEAY 544


>gi|160938596|ref|ZP_02085948.1| hypothetical protein CLOBOL_03491 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438295|gb|EDP16054.1| hypothetical protein CLOBOL_03491 [Clostridium bolteae ATCC
           BAA-613]
          Length = 958

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/458 (21%), Positives = 191/458 (41%), Gaps = 16/458 (3%)

Query: 502 MSNSNGDILRYIGI-ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           ++  +G I+  + I   +I+  K+    I    ++D LTG+ N   F  R   +L     
Sbjct: 510 VAAVSGSIILLLCINLFNISRSKR---RIQDLLYRDELTGLDNINRFYVRAEELLATGK- 565

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  V+  DID++K IND  G   GD+VL +    + + ++  +  ARLS + F ++
Sbjct: 566 -----YAVVYCDIDRFKLINDTFGFEEGDEVLRAFGSILQKSMEDRECCARLSADNFVML 620

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAEL 679
              +      AD                     +  S G     + +     +ML  A  
Sbjct: 621 RHYKQWETLAADLMHIQAVLNKWRGERGIIPYEIAVSFGVYQADAGETNDMKQMLDFANY 680

Query: 680 AMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AM  AK    G   +   ++ +       ++  L  A+E  E    Y P + +    IVG
Sbjct: 681 AMRSAKTAAGGSCFLYDEQMRNKALFEQGLEGRLASAMEQGEFEAYYQPKVDMDTGRIVG 740

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP+ G +    F+   E+  +I  ++L M E++ R +  W D+   P + + 
Sbjct: 741 CEALVRWNHPEQGLLMPGSFIPFFEKKGLIVRVDLHMFEQVCRTVRRWLDE-GRPAVTVS 799

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            N +      +     +  +  +       +++  +ES +   PE     L  L+  G  
Sbjct: 800 CNFSQMHFGHDGFAGQVSEIADRFQVPHHLLEVEITESAIADAPESVSSALTELKMRGFQ 859

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGS-TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFG+  S L  L  +  D +K + S +  G    +   ++ +++ MA  +   ++ 
Sbjct: 860 IAIDDFGSGYSSLGQLQRLRADVLKLDRSFVCAGLQGPREQIVIENLVNMASELGMEVVC 919

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  ++ +K L  +GC   Q  +   P+   +  +LL
Sbjct: 920 EGVETQVQVKVLQDIGCHIAQGYYYYRPMQTAAFEQLL 957


>gi|27376002|ref|NP_767531.1| hypothetical protein bll0891 [Bradyrhizobium japonicum USDA 110]
 gi|27349141|dbj|BAC46156.1| bll0891 [Bradyrhizobium japonicum USDA 110]
          Length = 580

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/534 (23%), Positives = 231/534 (43%), Gaps = 28/534 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D   + +      A  LG+                   D    R      +   +  +  
Sbjct: 35  DAHGELLLVNDAAAAQLGMDGSRPSP------------DLTPRREACRRALSAGQAVVTE 82

Query: 482 EFRVRAADNQFHWMIIRI-RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           E      D     +++   RP+  +  ++L  I  ++DITEQK   + +  +A+ D LTG
Sbjct: 83  E---ALHDGAARQVLLTTHRPVRLAGRELL--ISASSDITEQKNFEDQLFRSAYFDELTG 137

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +P+R+    R   +L     D   R  +  +D+D +K IND  G AVGD +LV L +R+G
Sbjct: 138 LPSRRVIEHRANNLLA---RDGGERFALAFLDVDNFKHINDYYGHAVGDALLVELAKRLG 194

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             L+  D+L+R+SG+ F ++L       ++A+F  A  + +  P  +   E+  + S+G 
Sbjct: 195 RDLRDSDMLSRISGDEFLLLLSPIQGQEEVAEFMQATLERLTAPFFIDHSEVFASTSVGI 254

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718
           + +     +   + +NA++AMY  K+ G      F  S  R       I++ L LA+   
Sbjct: 255 SIYPDHGSSFEMLRQNADIAMYRIKNDGKGSAAFFDASMEREALARTKIEQSLRLAILEK 314

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
                +   + +  + + G+EAL++    +    +   F+ +A EL +I  +   +L  I
Sbjct: 315 RFCCAFQSKVDIRTQAVKGIEALVRLRDDEGVIQAPGSFINLAGELGLIDELTHLVLAEI 374

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            + I    D        I IN+A++   + E        +  T + P R  +  +E   +
Sbjct: 375 VKSIDLINDTFGA-DASISINVAARQAGNPEFMRSFAQALDNTGF-PQRFMIELTEEAFV 432

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRI 896
                   +L   RK+G+ +++DDFGT  S LS L  I  D +K + S +T      +  
Sbjct: 433 AKSHFQSEILPMFRKLGVGISIDDFGTGYSSLSALADITADEIKIDRSFITDIHKRPRSQ 492

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSI 949
            ILR+I  +++ +  T+IA+ +    ++  L       Y Q  + + P+    +
Sbjct: 493 GILRAIESLSEALGMTVIAEGLESYEELAYLQAATKIRYAQGYYFSRPIFLEEL 546


>gi|296451640|ref|ZP_06893374.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878885|ref|ZP_06902885.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296259558|gb|EFH06419.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430157|gb|EFH16004.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 470

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 193/430 (44%), Gaps = 9/430 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ DNLTG  N  +    +     +   +  ++  ++ IDIDK+K IND+ G  V
Sbjct: 39  KLQKIAYTDNLTG-AN--TIDKFVIDANKILCKNTQVKYALLYIDIDKFKYINDLFGYEV 95

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           G+++L +LT+ I   +   ++ AR+S + F II+        I +    + + + +  N 
Sbjct: 96  GNEILRNLTKIIKSNIFEEEMFARISADNFIIIMKYI-EEEDITNRLKIIFEELDLFNNN 154

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
            E +  +  S G           + ++  A +    AK    +    +            
Sbjct: 155 QEEKYKLVLSCGIYFILPEDRDINSIIDRANIPHKMAKGGHKSSYAFYDNKIHDQEIKEK 214

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  +  ++EN E  +   P I L   EI G EAL++W  P  G I  +EF+   E+  
Sbjct: 215 EMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDKGLIPPNEFIPFFEKNG 274

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  ++L++LE +   +  W D     P+ I +N++   L  N   E  + +I K     
Sbjct: 275 FVINLDLYVLEEVCIYLRKWIDAGIN-PVTISVNVSRIHLYCNNFIETYKNIIDKYNIPA 333

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I+L  +ES++  N +    ++  L+KIG  +++DDFG+  S L+ L  IP D +K + 
Sbjct: 334 KYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYSSLNMLKEIPMDILKLDQ 393

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +  +  +++   I+  ++ MAK +   +I++ +  E   + L  + CD  Q      P
Sbjct: 394 KFIMETYNSKRSKIIVTKVVEMAKELGMKVISEGVETEEQFELLKEVKCDMAQGYLFGKP 453

Query: 944 LGFNSILKLL 953
           +       L+
Sbjct: 454 MPIEEFEHLI 463


>gi|77404812|ref|YP_345384.1| diguanylate cyclase/phosphodiesterase with phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
 gi|77390462|gb|ABA81643.1| Phytochrome sensor diguanylate cyclase/phosphodiesterase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 980

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 204/430 (47%), Gaps = 19/430 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   +      D LTG+ NR    +RL         D      ++ ID+D++K +ND 
Sbjct: 549 QRTRAELARLRHYDPLTGLANRSYLQERLAQ-------DGQSAAALLFIDLDRFKAVNDS 601

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G  VGD +L+ + R +   ++  D++ RL G+ F ++     ++  I   A  +R+ + 
Sbjct: 602 MGHGVGDGLLIEVARSLVATVRPHDLVVRLGGDEFVVLCHRL-DAAGIVSLAERLRQVLE 660

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
            P  +  R+  ++ASIG A   S      ++++ A++AMY AK  GGN  E FR S    
Sbjct: 661 QPFEVAGRKCHISASIGIAMADSIGD--LDLVRAADIAMYAAKKNGGNRGELFRPSLYEE 718

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  V +  D+  A+E+ + +LVY PI       E +VG EAL++WDHP  G +    F+
Sbjct: 719 TTQLVELDNDMRGAIESEQFHLVYQPIFALNPETERLVGFEALLRWDHPLHGALQPGIFI 778

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE L  I A+  ++L R    + ++R       + + +N++   L   +    +  L+
Sbjct: 779 PLAERLGHIHAMGNWVLRRAILQLQAFRSAGPELDLKMNVNVSPLQLARPDFLARLADLL 838

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++        + L  +E+ +    E     L  +R +G+ + +DDFGT  S L+ L  +P
Sbjct: 839 AQVPDLPRHALCLEITETSLSD--EAVSEALISIRALGVRIAIDDFGTGFSSLACLRRLP 896

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D  K + + + G  +  +      ++  +    +  ++ + I     +  +   G D+ 
Sbjct: 897 VDVAKLDRAFLGGGHTAAQDHRFFAAVTGLVHAADLKVVQEGIETLDQLALVRAAGADFA 956

Query: 936 QDSHVASPLG 945
           Q  H+A+PL 
Sbjct: 957 QGFHLAAPLS 966


>gi|238916919|ref|YP_002930436.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
 gi|238872279|gb|ACR71989.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
          Length = 558

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 240/559 (42%), Gaps = 26/559 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D ++  D+  D+   +  I  +  L S       +  +  +H +D D    
Sbjct: 15  LHLVGQSTDDYLYILDLTNDKAVYSKSITNVFALDSEEFSNATQELVKVVHPDDIDMLMN 74

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++  +  R+     E+R +  D ++  +  R + + +     +  IG  ++I +     
Sbjct: 75  DIEDGMNGRKSSHNLEYRWKTVDGEYVAINCRGQYIISHG--AIYLIGRISEIGK----- 127

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 +  DN TG+  R      L  + +  A   N    +M++ +D +K+IN+  G  
Sbjct: 128 -----QSRFDNNTGLY-R---EIVLENVYNEYAKTRNASGFLMLVGVDNFKEINEKYGAK 178

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--ENNSLKIADFAIAMRKSIAMP 644
            GD+VL  LT  I + +  P  + R+ G+   I +    EN+  +       +R  I   
Sbjct: 179 TGDEVLNILTDSIKKYIDTPLRIFRMPGDECAIFMPYSMENDINQAKILYKRIRNRIDRA 238

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702
           I   + +I  T S G A + + K + +E+LKNA+ A++ AK  G N  E F     +   
Sbjct: 239 IEKRKYDIFFTISAGVAEFDTEKDSFNELLKNAKFALHAAKLNGKNRCEIFVETEYTEYI 298

Query: 703 DRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +++ ++++L   +        L + PI    D+ + G EALI+W+  K+G I  + F+ +
Sbjct: 299 EKLSVQDELRRCISEGFEGFELYFQPIYNTDDDSLSGAEALIRWNSRKYGFIGPNTFIPL 358

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  +I  +  +++   A+    W    ++P   + IN++   ++ + + + +   I +
Sbjct: 359 LEDSALIIPLGRWIINTAAKACNRW--ITSIPDFVMHINLSFVQIVKSNIVKDVLENIER 416

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              + +      +E++ M      + +     K      +DDFGT  S   Y+    FD 
Sbjct: 417 YSAANNHYVFEITETIEMDQIPAVQNVFKEFVKNEFRFAIDDFGTGYSNYGYMRDRTFDI 476

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + S +T     +    ++  II MA  +   +  + +  + ++  + ++G DYIQ  
Sbjct: 477 VKVDRSFVTDIDKLKDNYLMVSFIIKMAHEMGLHVCIEGVETKEELSCVKKLGADYIQGY 536

Query: 939 HVASPLGFNSILKLLKERF 957
           +   P+      +   +RF
Sbjct: 537 YYGKPVCLQDFEEQHLKRF 555


>gi|110635912|ref|YP_676120.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1]
 gi|110286896|gb|ABG64955.1| diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1]
          Length = 442

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/423 (26%), Positives = 205/423 (48%), Gaps = 10/423 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+ + QSFL  +T ++        +   V+V+D+D +  I D+ G  VGDD+L    
Sbjct: 23  PLTGLGSYQSFLKEVTRLIANRGDAP-VPFAVIVLDLDGFMPIRDLFGNTVGDDILRQAA 81

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+   +    I+AR+  + F ++    ++   +A+ A  + + +  P  + ER + ++A
Sbjct: 82  MRLRAAIGDSSIIARVGMDDFAVLQPMISSEEAMAERARMLIEVLCPPYEVGERTVQLSA 141

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLA 714
           S G + ++S + T+  +L  AE ++YHAK  G   V  +          R+ I++ L  A
Sbjct: 142 SAGCSLFSSKEETAELLLGKAETSLYHAKRSGRRSVLVYTREMDEAAKRRIRIEQALRQA 201

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           V   E+   + PI+ L    +VG EAL +W   + G +    F+ IAEE+ +I  + + +
Sbjct: 202 VAEGEVEPHFQPIVDLPSRRVVGFEALARWTDSELGLVPPCVFIPIAEEIGIIGQLTVLL 261

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L + A     W        +F+  N+    L+D      + + + KT + P R+++  +E
Sbjct: 262 LRKAAETARDWPQH-----LFLSFNLTPSQLMDRNTGPQILSTLEKTGFDPKRLEIEITE 316

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           + ++G+P  +   +  LR +GI ++LDDFGT  S L  L    FD +K + + +    E 
Sbjct: 317 TGLLGDPASAARTIEHLRSMGIRVSLDDFGTGQSSLGRLRDFRFDKLKIDRAFVASLLED 376

Query: 895 R--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           R    I+R+I+ M   +   +IA+ I  E   ++L   GC   Q     +P    + L  
Sbjct: 377 RPSEHIIRAILAMCDGLGIDVIAEGIEEEAQAEKLVSFGCKGGQGFLFGTPSDATATLGH 436

Query: 953 LKE 955
           L+ 
Sbjct: 437 LQA 439


>gi|253998705|ref|YP_003050768.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. SIP3-4]
 gi|253985384|gb|ACT50241.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. SIP3-4]
          Length = 674

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/598 (22%), Positives = 226/598 (37%), Gaps = 26/598 (4%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           +I   L     L+  +IG + + H L       Q +F + +R    +    D V   D  
Sbjct: 90  LILNTLTPLWDLLGNIIGASRVVHDLTENNRIRQALFMEQQRWHAMLSAVRDAVITTDQR 149

Query: 425 RDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                       +LG     + G   R+++     + +      LD  +   R  L    
Sbjct: 150 GHIEFLNAAAERLLGQGLSRIGGQPLRHFISLADGSLQAGIDEALDISMREMR-SLDIPL 208

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA----FQDNLT 539
           RV A       +   I P+S         I +           +     A      D LT
Sbjct: 209 RVLAGHASPI-LKSTISPLSPEGRQTPGTIIVL----------QEGQALAPGQPELDPLT 257

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           GI NR +   RL   L  + T        M +D+D++K +ND  G AVGD +L  +   I
Sbjct: 258 GIHNRTTLETRLQAALASAHTQGEQHM-FMYLDLDQFKIVNDTCGHAVGDALLKQIVSII 316

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +LARL G+ F I+L+  ++            +  A      ++   V+ASIG
Sbjct: 317 RGCLSTDALLARLGGDEFAILLLCCDSDAAGKIADDICNRIEAFRFAHEQKRFHVSASIG 376

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAV 715
                      S +L+ A  A Y AK  G N    +R +        + +     L LA+
Sbjct: 377 LVRIDHQWQDISALLQIANAACYTAKQEGRNRTHLYRDTDFAIKKHHEEIQWVNRLELAL 436

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E +   L    I+ L +   +  E L++      G I +  FM  AE   +   I+ ++ 
Sbjct: 437 EENRFSLYCQRILPLNENSGIHGEILLRLPDGNGGMIPAGAFMPAAERFHITSRIDRWVT 496

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +R+   ++      +   + + +NI+ + + D    + M  LI  T  + S++    +E+
Sbjct: 497 KRVLHWLMQHEHVIDHIDV-LSVNISGQSIGDRAFHDYMLELIVSTPATYSKLCFEITET 555

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
             + N   +   +  +R+ GI  +LDDFG+  S   +L  +  D +K +G  +       
Sbjct: 556 AAITNLADANSFIASMRRFGIRFSLDDFGSGVSSFGHLKNLDVDYLKIDGQFIRAIDSNV 615

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              A++R I  +A       IA+ +        L  MG  Y Q      P   + +LK
Sbjct: 616 IDQAMVRCICEIANGTGLKTIAEYVETVEVENLLRGMGIHYTQGYLRHKPAPLDEMLK 673



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 105/350 (30%), Gaps = 59/350 (16%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +     +       + G +S  + G    +        +   ++ L+     R   + +E
Sbjct: 22  LDGIITSWDQRAEDMFGYSSLEVIGQP--FSALCTQEQQAQEKSRLNKMRESR-CIMHFE 78

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                 +     ++  + P+ +  G+I+    + +D+TE  +  +               
Sbjct: 79  TEHVHKNGSMLLILNTLTPLWDLLGNIIGASRVVHDLTENNRIRQ--------------- 123

Query: 543 NRQSFLDRLT-TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
               F+++     +  +  D      V+  D           G     + L +   R+  
Sbjct: 124 --ALFMEQQRWHAMLSAVRD-----AVITTD---------QRGHI---EFLNAAAERLL- 163

Query: 602 LLKFPDILARLSGN---RFGIILIS--ENNSLKIADFAIAMRKSIAMPIN-LLEREITVT 655
                  L+R+ G     F  +     +    +  D ++   +S+ +P+  L      + 
Sbjct: 164 ----GQGLSRIGGQPLRHFISLADGSLQAGIDEALDISMREMRSLDIPLRVLAGHASPIL 219

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES-FRVSSFRSDRVMIKEDLCLA 714
            S         + T   ++    L    A   G   ++    + +  +    ++  L  A
Sbjct: 220 KSTISPLSPEGRQTPGTIIV---LQEGQALAPGQPELDPLTGIHNRTTLETRLQAALASA 276

Query: 715 VENSELYLVYHP------IIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               E ++  +       I+       VG   L Q      G +S+   +
Sbjct: 277 HTQGEQHMFMYLDLDQFKIVNDTCGHAVGDALLKQIVSIIRGCLSTDALL 326


>gi|91779142|ref|YP_554350.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91691802|gb|ABE35000.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 657

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 211/435 (48%), Gaps = 10/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  +     A  D+LT +PNR+SF   L   L   A        V +ID+D +K++ND+
Sbjct: 215 QRLSDDNFRLASIDSLTDLPNRRSFFASL-RALSEQALSSGNGFNVGLIDLDGFKQVNDI 273

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL  +  R+  L +     ARL G+ FG++   +  +  + +    +   ++
Sbjct: 274 YGHASGDLVLQEVGSRLLSLAEPGIFFARLGGDEFGVLAQHQLANETLVELGERICGVLS 333

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +      ++ +IG+A++  +  T +++ + A+ A+Y  K         F       
Sbjct: 334 QPYRVAGNIAELSGTIGWAAFPEAGTTMAQVFERADTALYVGKESRRGTPVIFSTEHETR 393

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    + ++L  A   SEL+L + PI  ++ +  +GLEAL +W + + G +   EF+ I
Sbjct: 394 IRRSSLVTQELRHADLESELFLEFQPIHDVLAQRTIGLEALGRWHNARLGAVRPEEFIRI 453

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  I   +L +   ++  W      P +++  N+++ D+  +     +  ++  
Sbjct: 454 AERTELILRITEVLLHKALDEVARWP-----PELYLSFNLSAIDICTSARARRLIDIVMA 508

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P R+    +E+ V  + E++R  L  ++K G  ++LDDFGT  S LSY+  +PFDT
Sbjct: 509 SGVPPHRVSFEITETAVTRDFEQARCSLTVIKKAGCRVSLDDFGTGYSSLSYVHRLPFDT 568

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S MT       +  I++S++ + +N+    + + +     ++ +  +G   +Q  
Sbjct: 569 IKIDRSFMTDVDSNSASKKIVKSVLDLCRNLGLECVVEGLETASQVEVVKALGARAMQGY 628

Query: 939 HVASPLGFNSILKLL 953
             + P+  +++ + L
Sbjct: 629 LFSRPMRASAVAEYL 643


>gi|312198594|ref|YP_004018655.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EuI1c]
 gi|311229930|gb|ADP82785.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia sp. EuI1c]
          Length = 1519

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 243/559 (43%), Gaps = 14/559 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +    +  + S  +R       +    W+WD++   V+ + +   +LG   G     +  
Sbjct: 292 SASGAALLLLSGPDRLDRIEELTRTGTWEWDLIAGSVSFSRNQLKLLGFRGGD-EMDLDQ 350

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMSNSNGDIL 510
               +   D    R+ + + +    G   Y  R+R    Q           +++  G   
Sbjct: 351 IEQLLPPLDMRTIRSAVAAAIRTP-GTFTYLHRLRDRFGQGERVFECFGEVITDDAGTPA 409

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +G + DIT+  +  + +   A +D LTG+ NR++    L   L  +        ++++
Sbjct: 410 RVLGTSRDITDLHRVQQELAHLAERDALTGLFNRRAINKALRDHLAAAPA--GRSGSLLI 467

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K IND+ G AVGD V+  L++ + E L    +L RL G+ F ++L   +    +
Sbjct: 468 IDVDHFKDINDLRGHAVGDIVMRGLSQVLREEL-PDAVLGRLGGDEFAVLLRDGDGDAGL 526

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A      +     P+ + E  + VT SIG     +     +  L  A+LA+Y +K  G +
Sbjct: 527 AVAERVCQAVARTPVPVDELALRVTVSIGVVPL-AHVDNETAALAQADLALYDSKDAGRD 585

Query: 691 HVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  + +      +   + + +A+E+  L +   P++ L    ++G E L++     
Sbjct: 586 RARLFTDAQYSQAERRVSVTQRVRVALESGTLAVDALPLVDLGARRVIGYELLVRLRDGL 645

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +S  EF+   E   ++  ++ +++ +    +           +++ +NI+++ + D 
Sbjct: 646 LPELSPREFLEPVERTELVLRLDRWVVGQAVAALA---ADGPHGSLYLHVNISARSVEDP 702

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + +   +  +  +P+R+ L  +E   + + E +R L  +L   G    LDDFG    
Sbjct: 703 GFGDFVLDALRGSAVNPTRLGLEIAERSTLVSVEPARRLAEKLTAAGCRFILDDFGVGMG 762

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            + +L  +PF  VK +G  +  + E     A++ +++ +A+ +    IA+++  E   + 
Sbjct: 763 SVVHLRTLPFSGVKIDGDFVRQADENAQDMALVDAVVRIARTLGMYTIAENVDRESLARV 822

Query: 927 LTRMGCDYIQDSHVASPLG 945
           L  +G DY Q  H+  P  
Sbjct: 823 LADIGVDYAQGFHIGPPRP 841


>gi|163734786|ref|ZP_02142224.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
 gi|161391891|gb|EDQ16222.1| GGDEF/EAL domain protein [Roseobacter litoralis Och 149]
          Length = 824

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/625 (21%), Positives = 253/625 (40%), Gaps = 47/625 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           + +   + + +++     G  L+++ I  T +         +Q      ER   A+    
Sbjct: 213 LELAGDIHHRLLRSRAKNG-DLVMLRIDTTELVRQRRALEAAQ------ERLISAINAYP 265

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHG--------PIRNWLPYIHINDRDNFRTI 467
           D    +D   + V   P  A  +      +              +   I    R      
Sbjct: 266 DPFAIYDAEHNLVVWNPAYARSVTDTPQQLRTGTNLKDLLRQAAFSGRI-PAARGREEEW 324

Query: 468 LD-----SFVGYRRGRLQY----EFRVRA---ADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           L+       +       ++     FR+      + ++  + + I  + N    + RY   
Sbjct: 325 LEGYYSPQLLDRSVEDFEFADGQHFRIVRSKAKNGEYVVLRLNITEVVNQRRAVERYTK- 383

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                + +++ E I   A  D+LTG+ NR+    R    L            ++ ID+D+
Sbjct: 384 -----KLERANEEITHTAVHDDLTGLGNRRHLSQRF-QELAECQRTHGGEIAMLHIDLDR 437

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+IND +G A GD VL+    RI   ++  D++AR+ G+ F ++L  +  S +    A 
Sbjct: 438 FKQINDTMGHAAGDHVLLETANRIRHEVQPQDVIARIGGDEFVVLLRFKTGSTRPFQLAT 497

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   + MP+    +E    ASIG A          ++L N+++A+Y AK  G   +  F
Sbjct: 498 TLLNELQMPVYFEGKECRFGASIGVAETPL--SEVDKLLTNSDIALYKAKRAGRGRLGLF 555

Query: 696 RVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S          + +D+  A+E  E    Y P I      + G+E L +W HP+ G ++
Sbjct: 556 DRSDLQDILKNKRLADDVLRAIEKDEFVPYYQPQIDSKTGHVAGVEVLARWQHPEKGIVA 615

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  A +L +  +I+  + E+  +D           P  +  N+++  + +N     
Sbjct: 616 PEGFLATATDLNVTASIDEMIFEKAMKDCEGVLPHLPSRP-SLSFNVSASRVRENS-INE 673

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSY 872
           ++  +S       +I     E++     + + L  L RLR IGI++ +DDFG+  + +  
Sbjct: 674 IRTRVSGY---SGKICFELLETIFFEEEDDAFLFQLDRLRDIGITIEIDDFGSGHASVVA 730

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  I  D +K +G L+   TE      ++RSI+ +   +E  I A+ +        L  +
Sbjct: 731 LQRIGPDRLKIDGRLVAQVTESDSGLRLVRSIVEIGLALEMGITAEGVETREQAAVLADL 790

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD +Q    A P+ F  +L  +  
Sbjct: 791 GCDRLQGFLFAKPMPFEKLLTFVAR 815


>gi|89093023|ref|ZP_01165974.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EALdomains)
           with PAS/PAC sensor [Oceanospirillum sp. MED92]
 gi|89082673|gb|EAR61894.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &
           EALdomains) with PAS/PAC sensor [Oceanospirillum sp.
           MED92]
          Length = 611

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/455 (27%), Positives = 218/455 (47%), Gaps = 15/455 (3%)

Query: 512 YIGIAND----ITEQKKS---LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           Y+    D    I E +      E +      D LTG+  R +F  RL   L  S  D + 
Sbjct: 157 YVASLADNISMINEHELWLKDREQLEFLEQFDGLTGLEKRNNFQKRLDYDLQDSP-DPDR 215

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILIS 623
              ++++ ID +  +N+  G  V D +LV L+R++  + L     L+R+ G+ F I + +
Sbjct: 216 SRALILLGIDFFGAVNETHGHKVADQLLVELSRQLSSISLTHHYRLSRIGGDSFAIWIPN 275

Query: 624 EN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              +             +    I L    I+V  S G   + S      + L+ AE+AM 
Sbjct: 276 LRGSEELQQLLQELQYVAEKEFICLDSPPISVNFSTGVVIYPSEGDLPFDPLRCAEIAMQ 335

Query: 683 HAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K +    V+ F          +  ++ +L  A++N EL   Y PI+   + ++VGLEA
Sbjct: 336 RTKDQSRGGVQYFSTEWMVELEGKRTLENELVDALKNQELTAFYQPILCPDERKVVGLEA 395

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP  G +S ++F+  A++L ++  I  FML+R ++DI   +        ++ +NI
Sbjct: 396 LVRWQHPTKGLVSPADFLPAAKKLGLMGRIGSFMLQRASQDISQLQKMGGDVQ-WVSVNI 454

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           AS+ L D  L + ++ ++S+     S I+L   E ++  +    R  L  + ++G+ L +
Sbjct: 455 ASEQLYDPMLAKEIEQVLSEHNLPSSAIELEIVEELISQDSTLVRAQLNAMSELGVRLAI 514

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S LS L ++P   +K + S + G   +E    I +SII +AK ++  ++A+ +
Sbjct: 515 DDFGTGYSSLSRLKHMPVTKLKIDKSFVDGLPSSENDRCIAQSIIGLAKGLQIELVAEGV 574

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +  +  L  +GC+Y Q  + A PL    + K L
Sbjct: 575 EEKAQVDFLKDLGCEYFQGYYFAKPLPIQEVHKYL 609


>gi|158424709|ref|YP_001526001.1| hypothetical protein AZC_3085 [Azorhizobium caulinodans ORS 571]
 gi|586791|sp|Q04855|Y3085_AZOC5 RecName: Full=Uncharacterized protein AZC_3085
 gi|38736|emb|CAA45329.1| ORF1 [Azorhizobium caulinodans ORS 571]
 gi|158331598|dbj|BAF89083.1| hypothetical 80.5 kDa protein in ntrC 5'region [Azorhizobium
           caulinodans ORS 571]
          Length = 735

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/574 (18%), Positives = 213/574 (37%), Gaps = 28/574 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +   L     ++G+ S+  R+++ +  S D V   D     V        I G    
Sbjct: 167 IAAVLAGLLARSGTEGLVSEAARRAM-LDTSIDAVIVADEAGAIVEFNHAAEAIFGHTRE 225

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ---YEFRVRAADNQFHWMIIRIR 500
            + G        I  +  D  R      +      +     E     AD       + + 
Sbjct: 226 GVIGRPMT-ETIIPAHYIDRHRQGFMRHLATGENHIMRRLVEVEALRADGSVFPAELTVN 284

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                   +  +     DI+++  S   +   AF D  TG+ NR   L   T        
Sbjct: 285 EHRAGGRRL--FSAFVRDISDRITSRRALERLAFTDMHTGLSNRTGLLRLCT------GR 336

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  V+++ +     +    G    + ++V     +  +L     L R   + F ++
Sbjct: 337 PTRPSGAVVLM-LRDLGVVKTSFGDDWAEPMIVETANLLSRMLPQEACLGRTGESEFTVV 395

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                     A+ A  +   +   I    R   +   +G             +L++AE+A
Sbjct: 396 TW---QPGAAAELAETLIGRLRSAIESGGRRFYLRVGLGVVERPGDATY---LLRDAEMA 449

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE--LYLVYHPIIRLMDEEIVGL 738
                  G     +  + +    R+ ++  L   ++     L L Y P++      +VG 
Sbjct: 450 A-RDCRDGHLLHFAEHMRAQHQQRLELEMALRDVIQRRTSALSLHYQPVVSARTGGLVGF 508

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIF 795
           EAL++W     G +S + F+ +AE     + +  +++E        W   R    + P  
Sbjct: 509 EALVRWYSETHGPVSPALFVPLAEAGGFAERLGAWVIETAISACAGWNVRRRAHGLAPWH 568

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN+++ +++  +L E ++  ++     P  +    +ES ++  PE +   L RLR +G
Sbjct: 569 IAINLSATEVVAPDLIERVRQTMAFHGLPPQCVCFELTESAILNQPEIAIETLSRLRALG 628

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
            +  +DDFGT  S LSYL  +P D +K + S +       +   I+R +I MA  +  ++
Sbjct: 629 CTTAIDDFGTGYSSLSYLQRLPMDVLKIDRSFVLDMVDNSRSREIVRVMIEMAHGLGMSV 688

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +A+ +     ++ L +MGCD  Q       +  +
Sbjct: 689 VAEGVETTGALQILRQMGCDRAQGFLFGRAMPGD 722


>gi|289626692|ref|ZP_06459646.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
          Length = 649

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T L  +         V V+D+D +K +ND+ 
Sbjct: 205 QLSNENLLLANQDSLTGLPNRRQFFQTLDTALQEA-LAQRTGLAVGVLDLDGFKPVNDLY 263

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 264 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFALVIKGDISNDALLAFGKHLCELMHE 323

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 324 SFELSDMSIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 383

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 384 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 443

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 444 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 498

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 499 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 558

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 559 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 618

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 619 YSPPISFEQTLVWIE 633


>gi|90021543|ref|YP_527370.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Saccharophagus degradans 2-40]
 gi|89951143|gb|ABD81158.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Saccharophagus degradans 2-40]
          Length = 913

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 247/565 (43%), Gaps = 16/565 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           +++            +    ER  +    +   ++   +    V   P +  ++G     
Sbjct: 342 SLVYERWQREATQLALQESEERFKVLAETTEVAIFA--MREKFVYANPAMERLIGYTEEE 399

Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +    ++     +  ++     + + +    +  +L+ E  V     +  W+   + P  
Sbjct: 400 LRALSVKILFGEVFASNFPRL-SSVKNSAKSKIQKLEVE--VATGKGESVWLHTNVAPAM 456

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +G +  ++  A DITEQK +   +   A+ D LTG+PNR   ++ ++  L+ ++ D  
Sbjct: 457 F-DGQLT-WLASAFDITEQKSTEARLRYQAYHDRLTGLPNRAKLMESISRCLEKASRDKY 514

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  +   DID++K IND LG  VGD +L+ + RR+   +   D++AR+ G+ F +++ +
Sbjct: 515 YRFAICFADIDRFKSINDSLGHLVGDQLLLEVARRLTSNISPLDLVARIGGDEFILLIDN 574

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N   I     +++ +I+ PI +   E+  +A+ G A    +   +  +L++A+LAMY 
Sbjct: 575 ITNEDDIHALVKSLQTAISKPIAISPHELVTSATFGVAIVDHNYEHAESILRDADLAMYQ 634

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK +  + +  F        +  I  + DL  A+ N+EL L Y PI+     + V  EA 
Sbjct: 635 AKTQESSRLCIFDTDMRNLLQQQIETENDLRNAIHNNELRLAYQPIVDFKTGKTVFFEAY 694

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W   K    +   F    E+   +     +ML  I + +  W       P  I +N++
Sbjct: 695 VKWRRKKLIAPTVEGFTQRPEDTGALIPAGEWMLRTIVQQLTDW--SLMHEPTPISVNLS 752

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++      L E +  ++  +  + ++I +   ES +  +       + RL+ IG  + ++
Sbjct: 753 ARQFETASLLERVINILQSSPAAKNKICIEVKESFL--DSNTLHASMDRLKSIGCDVLVE 810

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
            F    +  + L  +P   +K + ++     +     A  ++ I +  +    ++A+ I 
Sbjct: 811 GFANGLADCASLNALPIKIIKLHPNITNTIDQGDAYQAFAKASIDLLHSFGFKVVAQGIQ 870

Query: 920 GEIDIKELTRMGCDYIQDSHVASPL 944
               +K L  +GCD+ Q  + + P+
Sbjct: 871 TRRQLKTLIALGCDFGQGEYFSEPI 895


>gi|257054425|ref|YP_003132257.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Saccharomonospora viridis DSM 43017]
 gi|256584297|gb|ACU95430.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Saccharomonospora viridis DSM 43017]
          Length = 893

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/779 (17%), Positives = 297/779 (38%), Gaps = 50/779 (6%)

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
           +V    +      +A  V+    +      ++          +      A + + ++   
Sbjct: 115 LVIGLLVAPFEVVLAAHVVA--GVTTLLARRVTGRVLYNAGAFLLEVTSAFAVAGLV--K 170

Query: 271 MYLHWNRWHAKVGYITFSGIACIA-ILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
             L        +  +  +  A +A  L  M+    +         +           +  
Sbjct: 171 QALGSVEDMPWLAALAGTLTAPLASTLLAMAAVRVLRRRMRVGTVVRLAGRILVVGFVNA 230

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            +      V+         +  + L +A      +D+++       +  V L+     Q 
Sbjct: 231 SVGLTGYLVISKTPEAWPIVLAVSLGLAALYWAYSDLLREQRDMEALTDVSLMVARSGQQ 290

Query: 390 VLATGYFSQGIFSDG------------ERQSLAVLGSGDIV-WDWDIVR--DRVTTTPDI 434
             A      G                 ER    +  +  ++    D  +    V    D+
Sbjct: 291 AAARPAGKAGDVDVDVDIDVDEWTTIAERIRDQLAAARVVLRLRLDPEQPMRTVVVGDDL 350

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRT--ILDSFVGYRRGRLQYEFRVRAADN-- 490
           A   G  +          LP  H+           + + +  R         +R+A+   
Sbjct: 351 AA--GYDTELDADDPLLRLPGAHVRHLRVTEANPQIRAALLRRGASEALVVPLRSANQLL 408

Query: 491 -----QFHWMIIRIRPMSNSN--GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
                       R     +    G +  ++  A D    ++ L  +  +A+ D LTG+ N
Sbjct: 409 GIVEAYDRLSRWRGFGKYDVQLLGTMASHLATALD---NRRLLATLRHDAYHDPLTGLLN 465

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F       +      ++    V+ +D+D +  ++D LG    D +L++  +R+ + L
Sbjct: 466 RPGFRQ-----VAAEPLREHANSVVLRVDLDVFSTVSDALGYTWADRMLMAAGKRMRDTL 520

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                LARL G  F ++L    ++ +  + A  +R+ ++ P  +    +   + +G+   
Sbjct: 521 GAGVPLARLEGASFAVLLADC-DAERAQEIAQRLREQLSAPYPVDRLTVEANSVVGYVLT 579

Query: 664 TSSKI----TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           T+ +         +L+ A++A+   +           +      R  +      A+E  +
Sbjct: 580 TAEENAERVDVDSLLQRADMAVRATRGGEEIKSYVPSMGQIFLRRFQMVTQFRQAIEEGQ 639

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + + Y P + L D++++G+EAL++W HP++G ++  EF+   E   ++  +  F+L+   
Sbjct: 640 VTVHYQPKVTLPDKQVLGVEALVRWQHPEFGRVNPDEFVPAVEAAGLVGVLTSFVLDAAL 699

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             +  W D      I + +N++ ++L D E    +   + +       + L  +ES VM 
Sbjct: 700 DRVRRWLDDGLR--ISVAVNLSVRNLADAEFPARVAEALERFGVPGELLTLELTESDVMQ 757

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +PER+  +L  L  +GI L +DDFGT  S L+YL  +P D VK + S + G       +A
Sbjct: 758 DPERALPILRELSDLGIELAVDDFGTGYSSLAYLRQLPVDQVKIDKSFVFGMGTDLGDLA 817

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++RSI+ +  ++  T++A+ +  ++   +L  MGCD  Q   ++ PL  + +   L+ R
Sbjct: 818 VVRSIVELGHSLGLTVVAEGVEEDLARDQLEAMGCDVAQGYLISRPLSEDRLEAWLQAR 876


>gi|298292491|ref|YP_003694430.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Starkeya novella DSM 506]
 gi|296929002|gb|ADH89811.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Starkeya novella DSM 506]
          Length = 759

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/577 (19%), Positives = 240/577 (41%), Gaps = 29/577 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I   +      + + S+  R ++ +  + D +   D     V   P    +      
Sbjct: 168 AGLIALAVERSRAGRAL-SEATRLAM-LSAALDAIVTVDEAGQIVDFNPAAEAMFHYRRE 225

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL---QYEFRVRAADNQFHWMIIRIR 500
            + G        +  + R    + +  ++      +   + E +   ++     + + I 
Sbjct: 226 QVIGRSLG-ETIVPPSLRSAHLSGMTRYMSGAAPHILGRRIEIQACTSEGDVFPVELAIT 284

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +   +  +  +     DI+++ ++ E +   A+ D +T +PNR   +  +         
Sbjct: 285 EIRTEHRRL--FTAYLRDISDRVRANEALERLAYTDTVTELPNRAGLVRLVDAE------ 336

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                   +V+ +     ++  LG      ++V+L  R+   L     LAR       +I
Sbjct: 337 -GREPAGALVMRLPDLAILSASLGEDFIGPLMVTLANRLRAHLPADAQLARTGECELALI 395

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L        +      +   +  P+    R   + A IG A+         ++L+NAE+A
Sbjct: 396 LADHGEPEALGA---EIEALLHAPLESEGRRFYLRAEIGIATGPGR---VEQILRNAEMA 449

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGL 738
              A   G   V    + +    R+ ++  L  AV N   ELY V+ P++     ++ G 
Sbjct: 450 -SRANRSGRWRVFDESLRADHQHRLTLENALREAVTNRSDELYPVFQPMVDSRTGKVAGF 508

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIF 795
           EAL +W+HP+ G +  ++F+ +AE + ++  +   +++R  +    W   R  +  P  +
Sbjct: 509 EALARWEHPRIGPVPPADFIPLAEAVGLMDRLGDLIMDRAVKACARWNAGRRASGAPLRY 568

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+A+  L   +L   + A++++       ++L  +ES ++  P  +  +L +L+ +G
Sbjct: 569 VSVNLAAPQLAAPDLATRIAAILARHGVRGEEVRLELTESALLAQPAAAANVLQQLKALG 628

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
            S  +DDFGT  S  SYL ++P D +K + S M       +   I+  ++ +A  +  ++
Sbjct: 629 CSTAIDDFGTGYSSFSYLQHLPVDVLKIDRSFMPDLAQEPRARKIVAVMVDLAHALGMSV 688

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +A+ I     ++E+  +GCD++Q      P+ F   L
Sbjct: 689 VAEGIELPETLREVEAIGCDFVQGFLTGRPMRFEDAL 725


>gi|258620308|ref|ZP_05715347.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258587666|gb|EEW12376.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 674

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 226/525 (43%), Gaps = 17/525 (3%)

Query: 438 LGLASGSMHGPI---RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           L   +G + G +        + H  D+   R   +S     +   Q E  ++   +    
Sbjct: 153 LQWPNGDLFGTLCATDRREHHFHATDQQLIRAFRESIEAQLKTLYQRETLLQMNQDLHFK 212

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +++ +++ N  +        +I +++ + + I      D  TG  NR +   +L  +
Sbjct: 213 VRNKMQSIASLNQSL------HQEIDKRRAAEQQIEYQRSHDVGTGFLNRSALEHQLDEL 266

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L      D     V+ I     +++   LG  + DDVL  L  RIG ++    I AR + 
Sbjct: 267 LT--QLGDTCELAVLHIGFANVRQLQARLGYHLWDDVLKQLRERIGPIIDAELITARPTS 324

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               ++L S      +      +         +    + +   IG A    +     ++L
Sbjct: 325 TNLTLVLKSTQLDTHLNLLCHKLIHVGQAQFQIEGVTVHLNPYIGVALSRETH-DPQQLL 383

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +A  +M   K  G      S  ++   + +  ++  L  AV N++L L + P + +  +
Sbjct: 384 SHAVSSMIACKDSGYKVFFHSPAIADNHARQNQLENYLLHAVRNNDLMLYFQPKVSVKTQ 443

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W HP  G  S+   + +AE+  +I  +  F+L +  +    W      P 
Sbjct: 444 HWVGAEALLRWKHPVLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLS--ICPT 501

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++S  L ++   E +  L++   +   +++L  +ES ++ +   +  +L RL  
Sbjct: 502 FRIAINVSSVQLKNSRFVEQIHDLLTFYHFPAHQLELEITESGLIVDEPTAIDILNRLHG 561

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G++L+LDDFGT  +   YL   PFD +K + S +     +E    I+RSI+ +AK ++ 
Sbjct: 562 LGVTLSLDDFGTGYASFQYLKKFPFDGIKIDKSFLEQIEHSENDQEIVRSILHVAKKLKL 621

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ I  +   + +   GCD  Q      P+  ++  + LK+ 
Sbjct: 622 KVVAEGIETKQQEQFILEHGCDIGQGFLYGRPMPSDAFEQKLKQH 666


>gi|284992899|ref|YP_003411453.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284066144|gb|ADB77082.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 846

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/710 (19%), Positives = 280/710 (39%), Gaps = 41/710 (5%)

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA--SIARITLASIVLYYTYFIIY 328
             L        + ++++     +A L   +     + A        L + +L     +  
Sbjct: 135 RVLPVGVLSDPLTWVSYLVAIVLATLVGGALIRLAIIATQGYPGRALWTSMLLAAVAVTP 194

Query: 329 HGMKGYERAVLLIPA--WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
             +     A+LL+    W L+ +  +   + +  R    + +       V       +  
Sbjct: 195 MAVLVGLSALLLVEVTPWTLLLVMPLVGGLVLLYRRFAAVSREGQDLEKV-------YAF 247

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD---WDIVRDRVTTTPDIATILGLASG 443
            + V        G     E     +      +W     D     V  + D     G +  
Sbjct: 248 ARQVEQISPDEDGPRRLAEGIRELLNAERVALWLPPYLDEEPRLVVASDD-----GRSWY 302

Query: 444 SMHGPIRNWLPYIHIN---------DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
                  +       +                   + +  R         V  A  +  +
Sbjct: 303 DGPSDPDDLFRRRVTDGSSDGPLLVSLARATEAEATALTRRGAHDLLAAPVATAAGEPGY 362

Query: 495 MI---IRIRPMSNSNGDILRYIGIANDITE---QKKSLEGILCNAFQDNLTGIPNRQSFL 548
           +     R   +S ++GD      +   +     Q++ L  I  +A  D LTG+PNRQ   
Sbjct: 363 LEICDRRSDIVSFADGDRSALDSMLTHVNAAIRQQQLLTQIRYDADHDRLTGLPNRQRLA 422

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             +  +L         R  +++  +D Y ++ D LG A  D++L+     + E      +
Sbjct: 423 VEIDELLVADPVTG--RAGLILASLDNYAEVTDTLGHAASDELLLVTAGLLREHAPPQAL 480

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +AR+ G +F ++L   +        A  +R++ +  + +   ++ VT +IG A+      
Sbjct: 481 VARMEGEQFAVLLPGLSLP-ATERAARRLREATSTRVRVAGLDLEVTLTIGVAAAPVHGA 539

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
            S  +++ A++A+     + G       +      R+ +  +L  A+ + ++ +V+ PII
Sbjct: 540 DSGTLMQRADVALLAGAGKSGVASYHPVLDQQSLRRLQLGTELEQAMADGDISVVFQPII 599

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                +IV +E L++W HP++G I+  EF+ +AE++  I  +   +L+        W DQ
Sbjct: 600 DARTSDIVSVETLVRWAHPRYGAIAPDEFIHLAEQIGRIGPLTDHVLDLALARCRRWLDQ 659

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + + +N++++ L + +L + ++  + +       + L  +E  V+ +  RS  +L
Sbjct: 660 --DIALSVAVNLSARCLTEPDLVDRVRRALRRHGVPGELLTLELTEGSVVDDSVRSSTVL 717

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L  +G+ L++DDFGT  S LS L  +P D VK + S + G   ++    I RSII +A
Sbjct: 718 ADLHALGMRLSMDDFGTGYSSLSQLRQLPIDEVKIDKSFVLGMSTSQGESFIARSIIELA 777

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            N+   ++A+ +  E+    L  MGCD +Q   V+ PL    +   +  R
Sbjct: 778 HNLGLRVVAEGVEDELTRNLLAEMGCDKLQGFLVSRPLPDQRLESWILAR 827


>gi|323168266|gb|EFZ53951.1| gmr domain protein [Shigella sonnei 53G]
          Length = 411

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 97/415 (23%), Positives = 199/415 (47%), Gaps = 11/415 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             + +   ++ +   DN +  V+ +D+D +KK+ND  G   GD +L  ++  I   L+  
Sbjct: 1   MQELIDHAINQA---DNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHD 57

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            +LAR  G+ F ++L S  +   +   A  +   + +P  +   E+  + S+G +     
Sbjct: 58  QVLARPGGDEF-LVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGISLSPEH 116

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVY 724
              S+ ++++A+ AMY AK  G      F   ++    + + +  +L  A+EN +L + Y
Sbjct: 117 GSDSATIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHY 176

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P I     E+  LEAL++W  P+ G I   +F+  AEE  +I  +  +++  + R +  
Sbjct: 177 QPKITWR-GEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAK 235

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           WRD+     + + +NI+++ L D  +   ++ ++ +  +    I +  +ES ++ N E +
Sbjct: 236 WRDKGIN--LRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELA 293

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902
             ++ +  ++G  + LDDFGT  S LS L   P D +K +   +          +++R+I
Sbjct: 294 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAI 353

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + +A+ +   +IA+ +    +   LT+ G +  Q    A P+   +  +  K   
Sbjct: 354 VAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYL 408


>gi|295694984|ref|YP_003588222.1| diguanylate cyclase/phosphodiesterase [Bacillus tusciae DSM 2912]
 gi|295410586|gb|ADG05078.1| diguanylate cyclase/phosphodiesterase [Bacillus tusciae DSM 2912]
          Length = 581

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 206/472 (43%), Gaps = 15/472 (3%)

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            +    + +     P    + ++L  +  +   + E+K+  E +  +A  D+LTG+ NR+
Sbjct: 115 HSVGVMNLLFADGEPSFGPDSELLTMVRRVIESVLERKRLEERLRRSADYDSLTGVYNRR 174

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F ++L  IL+ +A       T++ ID D +K IND LG   GD +L  L   +  +++ 
Sbjct: 175 RFQEKLADILNRTAR-----GTLLFIDFDNFKAINDNLGHRAGDKLLGELIGSLRGVVEG 229

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              L R+ G+ F + L            A   R      + L  R + +TASIG A + +
Sbjct: 230 RGFLGRIGGDEFALFLPEATIEEAKVLGAAIERVFRRHRVLLDGRRVIMTASIGIAEFPT 289

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR---SDRVMIKEDLCLAVENSELYL 722
           S  T  ++L  A+ AMY AK  G +              +  ++    +  A+E   L L
Sbjct: 290 SGSTVEQLLARADTAMYTAKRTGAHVHVYDPFQLEEVATTQELLWMTRIREALEGDGLLL 349

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              PI  L    +   E L++        IS   F+ +AE+  +I  I+L++++   R +
Sbjct: 350 YAQPIRELRSGSVSRYELLLRMRGDNGELISPKAFLGVAEKTDLIHRIDLWVVKEAIRLL 409

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                      I   +N+++K   D+     +   +S++    SR+    +E+  + +  
Sbjct: 410 EQMCRH--RSDICFHVNLSAKIFTDSSFPTWLSGQLSRSRVEASRLLFEITETAAIEDYV 467

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900
           R+R  + ++R +G    LDDFG   S L  L Y+P D +K +G  +          ++++
Sbjct: 468 RARDFIHQVRAMGFRFALDDFGIGFSSLYSLKYLPLDVLKIDGVFIQDLAHSRVDQSLVK 527

Query: 901 SI-IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + + M + +    +A+ +  E  ++ L   G  Y Q  H+  P+    IL 
Sbjct: 528 GLTVSM-RELGIQTVAEFVEDEKTVEILQEYGVTYAQGFHIGRPMPIPEILD 578


>gi|315443124|ref|YP_004076003.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
 gi|315261427|gb|ADT98168.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
          Length = 822

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/458 (23%), Positives = 209/458 (45%), Gaps = 28/458 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +  L      A +D LTG+ NR  F DRL   L L   D+     V+ +D+D +K +N
Sbjct: 359 ENRYLLSLAAERALRDPLTGLANRSLFQDRLAHALMLRERDNR-SVAVISLDLDDFKLVN 417

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D +LVS  RRI + ++  D +AR+ G+ F ++L  +  S  +   A  + ++
Sbjct: 418 DSLGHPAADSLLVSAGRRIVDCVRSGDTVARVGGDEFALLLEGDEVSSDL--IAQRVAEA 475

Query: 641 IAMPINLLEREITVTASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              P  +   +I +  SIG A  +  +    +  ++K A++AMY AK    + V +F   
Sbjct: 476 FTEPFVVDGHQILMHPSIGVAVASHDEPDISAQTLIKRADMAMYTAKKSRSSRVHTFDAD 535

Query: 699 SFRSDR-------------------VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
                                    V +  +L  A++  EL +VY P + L    I+G+E
Sbjct: 536 MTLPGPDADSIADSPDRKPGAGAAKVQLLGELRRAIDAGELEMVYQPKVALRTGRIIGVE 595

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +    FM +  +  +++ ++  +++++     +W  +     I + +N
Sbjct: 596 ALLRWPHPRLGLLYPGAFMSLVRQHGLMRPVSDLVVDKVLDAAAAWVAEG--VRIPVAVN 653

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + +  L D +L + +   + K   +   + +  +E +V+ +      +L +LR  GI + 
Sbjct: 654 LFAPTLRDAQLPDRLLGALEKRGLTTDMLTVEITEDLVVDDLGTVTDVLQQLRLCGIRVA 713

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDF +  S LSYL  +P D +K +   +       +  A++ ++I +A  +   ++A+ 
Sbjct: 714 IDDFSSGYSALSYLRDLPIDEIKLDRYFVAPVTEDPRAAAVVSAVIDLAHVLNIVVVAEG 773

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   +    L    CD  Q  +   P     +  L+  
Sbjct: 774 VEEPVTAHWLRDKQCDIAQGYYFGRPTDAARLPDLVDA 811


>gi|119486307|ref|ZP_01620366.1| hypothetical protein L8106_16674 [Lyngbya sp. PCC 8106]
 gi|119456520|gb|EAW37650.1| hypothetical protein L8106_16674 [Lyngbya sp. PCC 8106]
          Length = 1260

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 211/445 (47%), Gaps = 10/445 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q++        A  DN+T +PN      +LT  L  +  +  +   + ++D+DK+K IN+
Sbjct: 416 QQQLSRLTNNQASYDNVTKLPNHIVLEQQLTLALIDALNNAEI-MAIAILDLDKFKNINE 474

Query: 582 VLGIAVGDDVLVSLT----RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             G  VGD +L  +      R+ +L     +LAR  G+ F  IL     +     F  ++
Sbjct: 475 SFGYQVGDQLLQEVAIRLQDRLAQLQLKNSLLARWHGDGFVFILSEVAYADDAISFCQSL 534

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFR 696
              ++ P  L  + I + ASIG         TS  +L+NAE+A+  AK  G  +   S +
Sbjct: 535 LNVLSEPFYLQNQAIYLNASIGITLAPYDGETSETLLRNAEIALDQAKQYGNTYKLYSPK 594

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +      +++K DL  A++  E  + Y P I +    ++GLEALI+W+HP+ G IS   
Sbjct: 595 ANVQNHKSLILKTDLKQALQQEEFVVHYQPKIEIATGNLIGLEALIRWNHPRLGMISPDL 654

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E+    K I+ ++L+ +     +W+      P  I +NIA + L    L E +  
Sbjct: 655 FLASFEQANQSKNIDAWVLKTVCNQYRTWQMVGLNIP-NISVNIALQQLNSENLVEVLSE 713

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I      P  ++L  +E+ ++ +   S   L +L   G+ +++DDFG     L  L  +
Sbjct: 714 IIQAEQIEPKSLELEITETKLISDVSHSINRLKKLIDQGLQISIDDFGRGSFSLISLKEL 773

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P  T+K + S +       K+ AIL +++ +   +E  ++AK +     ++ L  +GC  
Sbjct: 774 PIKTLKIDSSFVEDLMSDPKQGAILEALVHLGNALEFNVLAKGVETRQQLEFLQSIGCHQ 833

Query: 935 IQDSHVASPLGFNSILKLLKE-RFP 958
            Q   ++ PL   +++  L++ + P
Sbjct: 834 AQGYLISHPLSGEAVIDWLRKPQNP 858



 Score =  122 bits (306), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 4/207 (1%)

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              +W    I  +S  +      I       + + + + +   A +D LT I NR  F   
Sbjct: 1052 TRYWEQHEITLLSELSAQTAIAIHQGQLYHQLEIANQELERLAARDGLTQIANRHCFDRV 1111

Query: 551  LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE-LLKFPDIL 609
            L           + + ++++ DID +K  ND  G   GD  L  + + I   + +  D++
Sbjct: 1112 LEKEWQRLMRSPD-QLSLILCDIDNFKLYNDTYGHQAGDYCLQQVAQAIQAGVKRPADLV 1170

Query: 610  ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGF-ASWTSSK 667
            AR  G  F +IL + +    +        +   + ++        VT S+G  +   ++ 
Sbjct: 1171 ARYGGEEFAVILPNTSLEGALRVAEEIRVRVRGLGVSHTGSAHQCVTLSLGVTSLIPNTS 1230

Query: 668  ITSSEMLKNAELAMYHAKHRGGNHVES 694
             + S+++  A+ A+Y AK  G +    
Sbjct: 1231 SSVSKLIGAADEALYRAKATGRDRSCC 1257


>gi|71907752|ref|YP_285339.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71847373|gb|AAZ46869.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 543

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/561 (21%), Positives = 225/561 (40%), Gaps = 42/561 (7%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI----NDRDN 463
           +  +  S D V+  D     V        + G +     G     +  I         D 
Sbjct: 10  ASILGTSLDAVFTIDERGRIVDLNDAAVRMFGRSREEFLGSN---ISCIVPSPLKEQHDG 66

Query: 464 FRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           F            V     RL  E      D     + + I       G    + G   D
Sbjct: 67  FLAAFSPDRGIKHVLGSGQRLDGE----RKDGTRFPVEVGISAFV--QGGKRYFTGFVRD 120

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++E++++ + +   A  D  +G+ N + F          S    +    V+ I ++++++
Sbjct: 121 MSERQRNEDHMHFLAIHDTDSGLLNYRGF--------CGSPLPADGEAQVVFIRLEEFRR 172

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +         +  L     R+   LK  ++ AR+  + F +++              ++R
Sbjct: 173 LAVAYNRHWSEATLHEFALRLQGFLKPGEMAARVREDAFAVLIPG-----DAGSRVESLR 227

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  P+        +T +IG +       +  + L +A+LA   A  +G   V +F   
Sbjct: 228 QLLRKPLTQGSMYFPLTCTIGISRPLG---SIEQRLHDAQLACDRAGPQGKGRVNAFDDE 284

Query: 699 S--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I+  L   + N  L L   P IRL D  I G EAL++W   + G +  SE
Sbjct: 285 MCRRTQRELQIETHLRKTLHNGGLSLALQPKIRLADRRIAGAEALVRWIDDELGLVQPSE 344

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE L +I  I   ++ +  R+I +  DQ     I + +N+++ D L   L   +  
Sbjct: 345 FIPIAERLGLIGCITDEVMRQSMREIAACADQ----SITVAVNLSALDFLQPHLVTKIGK 400

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+++    P+++ +  +ESVV  + +     +  ++ +G +++LDDFGT  S LSYL   
Sbjct: 401 LLAENQVDPAKLVIELTESVVANDAKLVTARMHEVKALGAAISLDDFGTGYSSLSYLRQF 460

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D++K + S +    E    +AI  +I+ MAK ++   IA+ +  E     L  +  D 
Sbjct: 461 PIDSLKIDISFVRDMPEKADAVAITTAIVAMAKALDLETIAEGVETEEQADLLGMLKVDL 520

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q      P+  +    L++ 
Sbjct: 521 CQGYLFGKPVSPSEFHNLVRR 541


>gi|320327816|gb|EFW83823.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|320328652|gb|EFW84652.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 656

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMQEA-LAQRTGLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 271 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFAVVIKGDISNDALLAFGKHLCELMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 331 SFELSDMPIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFEQTLVWIE 640


>gi|251772029|gb|EES52601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Leptospirillum ferrodiazotrophum]
          Length = 1594

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/561 (20%), Positives = 231/561 (41%), Gaps = 15/561 (2%)

Query: 407  QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             S AV   G+ V   D+    +       TI G +   + G     L             
Sbjct: 923  LSSAVAAVGEGVSISDLDGKILFVNESFTTITGYSQEEVQGKNLRILQG--EGTESKTVE 980

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             +   +   R   + +      D    W ++ I P+ + +G ++ ++G+  D+TE  +  
Sbjct: 981  EIRRAIEGER-PFRGQILNYRKDGSPFWNLLTISPVRDESGRLVEFVGVQRDVTEIVEVS 1039

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            + +   +  D LTG+PNR++         + S     +   V++ID+D +K +ND     
Sbjct: 1040 QRLEHESLHDRLTGLPNRRALDRAFAMAFERSQRY-RINLAVVMIDLDGFKPVNDRFDHE 1098

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             GD +L+++  R+G +L+  D LARL G+ F +++ +   + ++ +    + ++I     
Sbjct: 1099 AGDRLLMAIGERVGRVLRKTDFLARLGGDEFVLLVENYAGTEELLEVLRRVAEAIGREFL 1158

Query: 647  L-LEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            L     + V  S+G A+        +   +L+ A+ A+Y +K    +    + V      
Sbjct: 1159 LPGGEGVQVGVSMGVATTEGEPEAESPDALLRLADQALYESKAHKSDRETVWVVFGEGVA 1218

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                       +    L + Y PI+ L    +VGLEAL +        +S  EF+     
Sbjct: 1219 VRK--NPAQQLLATRHLVVFYQPILDLGKNALVGLEALARLKGDDGILLSPREFLGSLSS 1276

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +   +   +LER+  DI +  ++   P +++ +N+  + +   E    +  ++     
Sbjct: 1277 SDL-FELTRQVLERVLVDIPALSERF--PDLWVSVNVDPQSVT-EECVTCLGQMLEGASV 1332

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            +  RI L   E+            L  LR +G+ L +DD G+  S L  L  +P D VK 
Sbjct: 1333 ASGRIFLEILEARDFAENSGILETLHHLRNLGVRLAMDDVGSAYSSLLRLKELPVDKVKL 1392

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +       + +  + ++  +   +  T++ + +  E  +  +  M  D +Q   ++
Sbjct: 1393 DQGFIRTIEDNPRDLHFVGAVQELVSRMGLTLVVEGVETEGVLDAMRSMEIDMLQGYALS 1452

Query: 942  SPLGFNSILKLLKERFPLVKN 962
             PL F+ IL  L+   P  ++
Sbjct: 1453 RPLPFDGILAFLEGFVPDRRS 1473



 Score = 40.3 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 30/198 (15%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
             G  L + L    +      +   S+ + S+          +G  +  +   R  V   
Sbjct: 601 AIGASLSLALDRLDLKHREEESRALSEALLSN--------AAAGIDLVRY-PERVVVAAN 651

Query: 432 PDIATILGLA-SGSMHGPIRNWLPYIHINDRDNFRT----ILDSFVGYRRGRLQYEFRVR 486
                I G +    + G     + +    D + F         +    +       FR R
Sbjct: 652 EAFLRIFGFSSRAEIVGKSVREIYF----DEEGFSKVGELAARALSEGKAFDRDITFR-R 706

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            +D +  W    +  + ++  D+L  +    D+TE+ +    +   +           ++
Sbjct: 707 RSDGKRVWADAFVHCVPDATADML--VWTVVDVTERHELALAVERLSRF---------RN 755

Query: 547 FLDRLTTILDLSATDDNL 564
            L R+T IL     ++ L
Sbjct: 756 LLARVTRILAERGEEEGL 773


>gi|294676340|ref|YP_003576955.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294475160|gb|ADE84548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 904

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/562 (22%), Positives = 244/562 (43%), Gaps = 14/562 (2%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--- 457
               E   +    S + +   D     +        + G     + G +   L       
Sbjct: 339 VRARELAEMVFDQSSEAIVLTDPDLRILRANAAFEQVAGFGQARLLGRLLEGLLVAMAAP 398

Query: 458 ---INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                   +            RG  + E  +R+++ +      RI  +++++G +L ++ 
Sbjct: 399 GPGPATETSAPQDGWLAELRARGLWRGEAVLRSSEGKSMICWSRITRLADASGRVLGHVA 458

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +D+T  +++    L  A  D LTG+PNR    +R+   ++ +         V+ ID+D
Sbjct: 459 MFSDLTPLRQAQADNLRLANYDLLTGLPNRTLLGERIDGWIERAG-HGGRGFAVLFIDLD 517

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND LG   GD +L ++ +R+         +AR+ G+ F ++L     +      A
Sbjct: 518 QFKSVNDTLGHETGDMLLSAVAQRLRIGAGADHFIARIGGDEFVLLLRD-TGAEAAQRQA 576

Query: 635 IAMRKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV- 692
           +A+ +++A+PI+L    +    A++G A + +   +   +L+NA+LAMY  K      + 
Sbjct: 577 LALLEALALPIDLPGLHQYRPAATVGIACFGAHGDSRDVLLRNADLAMYAGKMSRRTVML 636

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
              ++    +  + ++  L  AVE  E+ L + P+  L D  + G EALI+W+ P  G I
Sbjct: 637 YEPQMGVEAARELDLRHALAGAVERGEMVLQFQPLFGLHDRGLRGCEALIRWNRPGRGLI 696

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELC 811
           +  +F+ +A+   ++ A++ ++     R +  WR          + IN  + DL   +  
Sbjct: 697 TPGDFLPVAQRAGLMPALDRWVFGEATRTLCRWRKSGRVGADWLMSINQTAADLAAPDWA 756

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +    +      + +++  +E  +      +   LGRLR  G+ L +DDFG   S L+
Sbjct: 757 EALTG-CAGCACDCTGLQIELTEDQLADRVPGAVEALGRLRARGLRLAIDDFGAGYSCLA 815

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P   +K +   + G    R    I+ +I  +A+      +A+ I  E +   L  
Sbjct: 816 YLARLPVSMLKIDAHFVRGIEADRNARLIVEAITGLARRFGYATLAEGIETEAEAATLAA 875

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
           MGCD  Q   +A PL   +   
Sbjct: 876 MGCDMGQGFLLAPPLSAAAFEA 897



 Score = 46.1 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFR 465
           + L +    D V   D                G +   + G   +++LP I         
Sbjct: 214 RRLLLDAFPDPVSVTDADGRVCLVNRAFLRANGRSEAEVIGQLPQDFLPLIE----ALHA 269

Query: 466 TILDSFVGYRRGRLQYE-FRVRAAD-----------NQFHWMIIRIRPMSNSNGDILRYI 513
             LD+ V   +  +  E  R+R AD             +  +     P+ +  G ++  +
Sbjct: 270 AQLDARVRRTQSGITLEQTRLRPADSLAPPSRTVSAGGWERLRTEKMPLFDDFGAVVGVV 329

Query: 514 GIANDITEQKKSLEGILC 531
             ++D+TE+ ++ E    
Sbjct: 330 TRSHDVTEEVRARELAEM 347


>gi|163800738|ref|ZP_02194638.1| hypothetical protein 1103602000593_AND4_00708 [Vibrio sp. AND4]
 gi|159175087|gb|EDP59884.1| hypothetical protein AND4_00708 [Vibrio sp. AND4]
          Length = 582

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/574 (19%), Positives = 243/574 (42%), Gaps = 19/574 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R         + ++  D     V          G+ +G +   +  WL  +H  
Sbjct: 17  LQIVEQRFIHIFDVFSEGLFYMDEFGTMVFYNQCFYEQFGINAGRI--NLDKWLNLVHPL 74

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+++    +++ +     R+   +R+R    Q+ W+          +G     +G   DI
Sbjct: 75  DKEHLLKRVNAHINTDNERMTTTYRLRKPSGQYVWIEGVAMTKETKHGQ--YMVGSHRDI 132

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E+K     I   AF DN +G+ NR   L  +  ++D      N   ++  I I++ K  
Sbjct: 133 SERKLMESYIHQVAFHDNASGMANRAHLLLNINELVD----SKNTHASIFYIQIEEIKSY 188

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            +  G  + D ++  L + +  L      + R+  + F I+++ +     +  +A  +++
Sbjct: 189 LNHYGSELVDGLVEKLLQTLSHLPSPNCSVYRVHDDDFAILVLDDVPIENLQSYAKTIKQ 248

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +    +    + +    SIG  S      ++ E+++ A     +A  +  +H+  +   +
Sbjct: 249 NYHEAVVDKGQHLGSNISIGLYSCIDPTHSAGEIIRKAARTCQYANEKKRDHIAVYSQKT 308

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I++ L  A+E   L + + PI+   D  +V  E+L++W   ++G I   EF
Sbjct: 309 RDAVDRYFFIEQGLKNALEERTLSVKFQPIVCASDLHVVSFESLVRWRSKEFGEIYPDEF 368

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +   + ER  + I S+RD+     + + +N++   LL++E    ++++
Sbjct: 369 IPVAEKKGLIVELGYQVFERACQFIKSYRDRY-QTQVRVNVNVSVLQLLNSEFPNKIKSI 427

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +   +P  I L  +E+ ++ N   +   L  LR++G SL++DDFG   S L+    +P
Sbjct: 428 ADEIGIAPQAIVLELTETFILDNNHAAITPLNTLRELGFSLSMDDFGAGYSSLNCFFDLP 487

Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S+   T +       L+ +I M +     ++ + I           +G DY+
Sbjct: 488 VTQIKIDKSMAWKTLTNRSSREYLKFLITMCREQSIEVVIEGIEDAKMRHFFAEIGVDYL 547

Query: 936 QDSHVASPLGFNSILK------LLKERFPLVKNT 963
           Q    + PL   S  +      LL  +    + T
Sbjct: 548 QGFWFSKPLSVASASRYTLIHSLLSSQTSASRRT 581


>gi|71734254|ref|YP_274669.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71554807|gb|AAZ34018.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324101|gb|EFW80183.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 656

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMQEA-LAQRTGLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 271 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFAVVIKGDISNDALLAFGKHLCELMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 331 SFELSDMPIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFEQTLVWIE 640


>gi|258623992|ref|ZP_05718945.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583786|gb|EEW08582.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 674

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/525 (21%), Positives = 226/525 (43%), Gaps = 17/525 (3%)

Query: 438 LGLASGSMHGPI---RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           L   +G + G +        + H  D+   R   +S     +   Q E  ++   +    
Sbjct: 153 LQWPNGDLFGTLCATDRREHHFHATDQQLIRAFRESIEAQLKTLYQRETLLQMNQDLHFK 212

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +++ +++ N  +        +I +++ + + I      D  TG  NR +   +L  +
Sbjct: 213 VRNKMQSIASLNQSL------HQEIDKRRAAEQQIEYQRSHDVGTGFLNRSALEHQLDEL 266

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L      D     V+ I     +++   LG  + DDVL  L  RIG ++    I AR + 
Sbjct: 267 LT--QLGDTCELAVLHIGFANVRQLQARLGYHLWDDVLKQLRERIGPIIDAELITARPTS 324

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               ++L S      +      +         +    + +   IG A    +     ++L
Sbjct: 325 TNLTLVLKSTQLDTHLNLLCHKLIHVGQAQFQIEGVTVHLNPYIGVALSRETH-DPQQLL 383

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +A  +M   K  G      S  ++   + +  ++  L  AV N++L L + P + +  +
Sbjct: 384 SHAVSSMIACKDSGYKVFFHSPAIADDHARQNQLENYLLHAVRNNDLMLYFQPKVSVKTQ 443

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W HP  G  S+   + +AE+  +I  +  F+L +  +    W      P 
Sbjct: 444 HWVGAEALLRWKHPVLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLS--ICPT 501

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++S  L ++   E +  L++   +   +++L  +ES ++ +   +  +L RL  
Sbjct: 502 FRIAINVSSVQLKNSRFVEQIHDLLTFYHFPAHQLELEITESGLIVDEPTAIDILNRLHG 561

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G++L+LDDFGT  +   YL   PFD +K + S +     +E    I+RSI+ +AK ++ 
Sbjct: 562 LGVTLSLDDFGTGYASFQYLKKFPFDGIKIDKSFLEQIEHSENDQEIVRSILHVAKKLKL 621

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ I  +   + +   GCD  Q      P+  ++  + LK+ 
Sbjct: 622 KVVAEGIETKQQEQFILEHGCDIGQGFLYGRPMPSDAFEQKLKQH 666


>gi|262402034|ref|ZP_06078599.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262352006|gb|EEZ01137.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 841

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 207/431 (48%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R         +++  +   +L   +++I IDK++ IND
Sbjct: 411 LKASFKALHSQLVYDSLTQLLSR-------EGMIESCSKLSHLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+++ +R+      P ++AR+ G+ F I L + N   ++ + AI + K  
Sbjct: 464 SLGHQQADQLLIAIAQRLKLTFPAPALIARIGGDEFAIYLPNVNQQDELKNLAIDILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSF 700
           A P ++    I V  SIG  + T + +T    L+N  +A+ +AK    +    +  ++  
Sbjct: 524 ASPFSMPNDNIAVNVSIGIVNLTEANMTV--WLRNGSIALSNAKADHTHISFYTPEMADA 581

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +   + LA++N E    Y PI+ L   E++G EAL +W  P+ G I   EF+ +
Sbjct: 582 SRKRMQMITQIKLALDNQEFVPFYQPIVDLHSGEVLGAEALARWISPELGLIPPMEFIPL 641

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    D        I +N++   L   +    +  ++ 
Sbjct: 642 AEESGLINAIGEQILRQACIDTVRGIADNKWPASFHIHVNLSVNQLSHPDFMAQLYHVLE 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++GN       +  L+K GI + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESKLPPANLTLEITESRIVGNDPVILHNMLELKKAGIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +          +++ +I+ M +  +  ++A+ I  +  +  LT++ C   Q 
Sbjct: 762 CLKIDREFIAQLNNHNLDNSVVAAIVNMTRGFKVELVAEGIETQEQVDLLTQLSCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPIAYQD 832


>gi|254228538|ref|ZP_04921963.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262392683|ref|YP_003284537.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151938920|gb|EDN57753.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262336277|gb|ACY50072.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 848

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 98/434 (22%), Positives = 199/434 (45%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  + S + +      D+LT + +RQ  ++                 ++ ++ I+K++ I
Sbjct: 414 SNLRASFKALREQLVYDSLTRLYSRQGLVEICEN------QSHLCHGSLFLLGINKFRDI 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +LVS+  R+ +      +LAR+ G+ F + L + +   K+      +++
Sbjct: 468 NDSVGHHNGDQLLVSIAERLKQEFSDNALLARIGGDEFAVFLSNADTEAKVKQTERRLQQ 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
             + P  +    + +  S+G      ++      L+NA +A+ +AK      V  +    
Sbjct: 528 LFSTPFMVEGENVVMKISLGIVQTQPNETMPL-WLRNASIALSYAKQDSLTGVCHYSPEL 586

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S    R  +   +   +EN E    Y PI+ L    + G EAL +W H   G +S  +F
Sbjct: 587 ASASKFRTQMLTKIQTGIENQEFVPHYQPIVDLASGNVCGAEALARW-HSDSGMVSPLDF 645

Query: 758 MLIAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +  RD   + +         + +NI+   L   +  + +  
Sbjct: 646 IPIAEESGMIKAIGQQILLQACRDTYQAIQSNQWPSDFQLHVNISVNQLSCPDFVDTVTN 705

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T    S + L  +ES ++ +   +   + +LR +GI + +DDFGT  S L YL  +
Sbjct: 706 VLDITKLPASNLTLEITESRIIDSAPTTLENMTKLRDMGIGIAIDDFGTGYSSLGYLHSL 765

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC+ 
Sbjct: 766 PFTCLKIDRTFINQLTQENLDSSVVAAVINITAGLKTNVVAEGVEDSNQAQLLRSLGCNQ 825

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+    
Sbjct: 826 VQGFYYSRPMPLEE 839


>gi|238916365|ref|YP_002929882.1| hypothetical protein EUBELI_00418 [Eubacterium eligens ATCC 27750]
 gi|238871725|gb|ACR71435.1| Hypothetical protein EUBELI_00418 [Eubacterium eligens ATCC 27750]
          Length = 756

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/763 (16%), Positives = 263/763 (34%), Gaps = 50/763 (6%)

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE 258
           A    +FL          + +    +    +  +       S    L             
Sbjct: 29  ALARVVFLYELGAFICGIIFLVYTYVPGTTITVLCKGLIMASFDWLLILLMYYTQYYTGM 88

Query: 259 IALSSSLIIFLFMY--LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLA 316
                 + +F+  Y  L    +           I  I+    +  +             A
Sbjct: 89  FKGIVGVKVFMIAYSLLETVAFLINTWTRWIFDITYISDDQIIVQFAKGNVLGRLHYVFA 148

Query: 317 SIVLYYTYFIIYHGMKGYERAVLL--IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
             ++          ++   R          IL+    +   M        D+   A    
Sbjct: 149 YGIMLLLILSYIVMVERMSRFYRFRYFAILILLLAASLLDIMTTWSDSIYDMSMAAFGIM 208

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            +LI  L    V   ++                SL +      +  +D     +     +
Sbjct: 209 SILIYYLTYRYVPNELIENT------------FSLIIRDMNSGIICFDNAGRCIYCNGIV 256

Query: 435 ATILGLASG--SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
             +  +      +     +WL     +D   FR  +                     ++ 
Sbjct: 257 KEMYSITDNINEVEHNYASWLHTQTEHDNKKFRQTISV------------------GDER 298

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             + I    + +   + +    I ND TE  + LE     A  DNLTG+ N++ F +   
Sbjct: 299 RSIDISYNRVYDDKHNFICDYFIFNDRTEAVELLEYEKFRATHDNLTGLLNKEQFYEETA 358

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++     D N    ++  +I  +K +N++ GI  GD+++      I    +   I  R+
Sbjct: 359 NVV---RNDRNHTYCLVCSNIKDFKLVNELFGIEKGDEIIKMQAGLIKASSESGYICGRI 415

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             +RF + +  ++   +I          ++M          +   +G           S 
Sbjct: 416 QNDRFAVCMPKDSFKNEIMQ-----NSIVSMQDRFNNASFKIRVVVGVYDIEDVDEPVSN 470

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           M   A +A    K+    ++  +         +   +  +   A+E  E  +   P +  
Sbjct: 471 MCDKAFIASETIKNNYETNIAYYDDKLLKRTLEERRVISEFEGAIEKKEFKMFLQPQVN- 529

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              +  G EAL++W HP+ G +S   F+ I E   +I  ++++M E  A  +  W+ + +
Sbjct: 530 THGKAYGAEALVRWQHPERGLLSPFFFIDILETTGLIYKLDMYMWECAAAKLSEWKKKGD 589

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
               +I +NI++KD    ++ E + +++ K    P  +KL  +E+ +M + +++  ++  
Sbjct: 590 TVH-YISVNISTKDFYLIDVYEVITSIVKKYDIEPKMLKLEITETALMSDLKKNMEVIKS 648

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
           LR  G  + +DDFG+  S L+ L  I  D +K + + +  +  +     IL +II +   
Sbjct: 649 LRDYGFKIEIDDFGSGYSSLNMLKDISADVLKIDMAFLRATENEVKGQDILETIISLGGK 708

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +   +I + +  +  +  LT MGC   Q  + + P+      +
Sbjct: 709 LGMEVITEGVETDKQLIMLTEMGCHIFQGYYFSKPIPVEEFEQ 751


>gi|257484328|ref|ZP_05638369.1| GGDEF [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 510

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 213/430 (49%), Gaps = 13/430 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L+ +++       V +ID+DK+K IND  G AVGD  
Sbjct: 80  LARHDPLSGLLNRRVFQEQLVARLEQASSQT----AVFLIDLDKFKLINDTHGHAVGDAA 135

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + E        +ARL G+ FG+ +  +   +++A  A ++   IA   +    
Sbjct: 136 ICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATLAESVLAKIAAS-SADLP 194

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            + ++A++G A        +  +L++A+ AMY  K+ G      + VS  R  R      
Sbjct: 195 RLALSATLGIAISPLDGSDADTLLQHADSAMYRGKNGGRAMFNFYEVSFEREQRQQELFA 254

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E++++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 255 QELRQAIEHNQIQPFYQPIVNLPEQRLAGFELLARWLHPERGTIMPLDFIPVAEQLGLIK 314

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  + +  + S+  +  +R+
Sbjct: 315 QLTESLLLQAFDQARDWPS-----DFTLSINVTSLMIESVDFPDWLAHVASEGQFPLTRL 369

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 370 EVEVTENALVANIDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 429

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 430 DTSLDNQNEMVKAILALGKSLRMKITAEGVEHEELADWLASHECDFAQGYLFGRPLPLAQ 489

Query: 949 ILKLLKERFP 958
           +  LL    P
Sbjct: 490 VTALLAMAEP 499


>gi|312198714|ref|YP_004018775.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EuI1c]
 gi|311230050|gb|ADP82905.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EuI1c]
          Length = 1113

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 194/439 (44%), Gaps = 17/439 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              AF D LTG+ NR   +      +            +MV+D++++++IN  LG   GD
Sbjct: 165 RGQAFNDPLTGLTNRAGMMHAAEPAIAEMLLAGRSAI-LMVLDVNRFREINTALGHQAGD 223

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILI--------SENNSLKIADFAIAMRKSI 641
           + L      +  +   P  + RL G+ F ++L          +    ++      +   +
Sbjct: 224 EALREFADLLRRVSPTPLFVGRLGGDEFVLVLPGKVLTTEDDDERRDRLGRLGREVLDQL 283

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
              + +   ++ + ++ G A+   +    S +L  A+ A+ +AK  G          +  
Sbjct: 284 DGLVRIRGIDVELESTAGLAAAPRNGDRLSALLPCADAALANAKRDGARVGVWTSGMAGT 343

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              RS  + +   L  A+ N EL L Y P+       + G+EAL++W HP+ G +    F
Sbjct: 344 VGVRSWELALHAQLRRAIANRELVLYYQPLQDAATGRVSGVEALVRWCHPERGLLPPGSF 403

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  +  + L+       +W  +     I +  N++++ L+ ++L   +   
Sbjct: 404 LPMAERSTLIIDLTWWELDEALGQCAAWVREGLH--IPVSANLSARMLVVDDLPRLITRR 461

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +      P  + L  +ES ++  P R+  +LG LR  G+ L LDDFGT  S +  L  +P
Sbjct: 462 LEAYDLPPDMLTLEITESALISQPARAATMLGELRTAGVKLALDDFGTGYSSMEILKALP 521

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +   +  +      +AI+RS+I +   +   ++ + +  E   + L  +G D +
Sbjct: 522 FDEMKIDKGFVADARGSLPDVAIVRSVIDLGHRLGLRVVGEGVEDEESARMLIELGVDLL 581

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q   ++ PL  + +  LL+
Sbjct: 582 QGDALSPPLPADELAALLR 600


>gi|163760786|ref|ZP_02167866.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
 gi|162282108|gb|EDQ32399.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
          Length = 644

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 200/451 (44%), Gaps = 17/451 (3%)

Query: 514 GIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            I   I  +    K        A  D LTG+PNR++  +++   +            + +
Sbjct: 184 AIFRQIDARLLADKLTAKAQRLADTDMLTGVPNRRAVFEKIDYFVK-----QGRPFWMGI 238

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K INDV G  +GD +L ++  R  ++        R+ G+ F  IL       ++
Sbjct: 239 LDLDGFKAINDVYGHIMGDRLLCAIVDRAKDINLEGVTFGRIGGDEFIAILPGTMTEEEV 298

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRG 688
                    +I+ P  +   E+T+ AS GFA + S   +S+++ + A+ A+Y AK   RG
Sbjct: 299 KRLGKDTIDAISSPYPMDLLELTIGASAGFAHFPSMGSSSAQLYEKADFALYKAKAHQRG 358

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              +            + I+ +L      +EL+L++ P      +++V  EAL +W  PK
Sbjct: 359 QCILFDTAEDKEMKQAIEIERELRECDLENELFLLFQPQYSPSLQKVVSFEALARWQSPK 418

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +   +F+  AE    I+ +   +  +    +  W        I    N++++D+ D 
Sbjct: 419 LGLVQPDQFIRAAERSGHIRKVTGILFNKGLDALAKWPR-----DISFSFNLSAQDISDR 473

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                + + I K+  SP RI+   +E+ VM + E SR LL  LR  G  + LDDFG+  S
Sbjct: 474 SFILSLLSAIMKSGISPHRIEFEITETAVMSDLETSRQLLQTLRSSGCKIALDDFGSGYS 533

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
              YL  +P D VK + S +     ++    I+  +I + + ++   + + +  E ++  
Sbjct: 534 SFEYLDQLPLDKVKIDRSFIRKVPHSDTSREIVAGVIGLCRKLDLRCVLEGVETESEMAI 593

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           L+ M  D IQ      P+  +    ++  + 
Sbjct: 594 LSPMKPDLIQGYLYGKPMKDSDARDMIDRQQ 624


>gi|238925241|ref|YP_002938758.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium rectale ATCC 33656]
 gi|238876917|gb|ACR76624.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium rectale ATCC 33656]
          Length = 758

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/654 (18%), Positives = 250/654 (38%), Gaps = 47/654 (7%)

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
                I       ++++   ++I    + Y  A              I +  +       
Sbjct: 141 YRLHFIFTYAFVILIIFTYLYMIIKSSRMYREA-------YGAIAVVIFIGFSFDIATIG 193

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                 L   +   + +I + +    +                SL V    + +  +D  
Sbjct: 194 SDSIYDLTMIIYGAIAIIIYYLTYRYVPNELI-------ENMLSLVVRDMNNGIICYDRK 246

Query: 425 RDRVTTTPDIATIL--GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
              +     +  I   G            W+  +  + RD+                  E
Sbjct: 247 GRCIYYNDLMEAIYRHGGNMSVYESKYSQWIEKLGDDRRDSMTFQ----------TTDIE 296

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                 + + H+  I  + + + +  ++    + ND T+  +S E     A  D+LTG+ 
Sbjct: 297 I-----NGEKHYFEIAYKRIYDESNRVICDYFVYNDRTQMYESWEQEKYKASHDSLTGLL 351

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F + +  +++      +    ++  +I  +K IN++ G+  G+ VL+   + +   
Sbjct: 352 NRDQFYEDVHDMVNK---YHDTTFYLICSNIKDFKFINEIFGMEKGNQVLLKQAKLMSSN 408

Query: 603 LKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                I ARL  +RF + L  E  +  ++AD    +++  +           +   +G  
Sbjct: 409 PSERTICARLMNDRFALCLPREEFDEKRVADSIKELQREFS------GNSFHLHTYMGVY 462

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
                    S M+  A +A    K+     V  +         ++  +  +   A++N E
Sbjct: 463 EIRDRDEAVSIMVDKANIAADTIKNNYDCCVAYYDEHLLEISIEQRRLLGEFEPALQNDE 522

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             +   P +   D    G EAL++W HP  G ++   F+ I E   +I  ++L++ E+ A
Sbjct: 523 FVMYLQPQV-KRDGAAKGAEALVRWVHPSRGILTPYAFIDILENAGLIYKLDLYIWEKAA 581

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           + +  W  +       I +NI++KD    ++ E    LI+K   + S + L  +E+ +M 
Sbjct: 582 QKLAEW-KEKGYGSYHISVNISTKDFYIIDIYETFTGLINKYGIAASNLHLEITETTLMT 640

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           + E++  ++ +L+ +G  + +DDFG+  S L+ L  I  D +K +   +  S  +     
Sbjct: 641 DFEKNMNIIHKLQDVGFRVEIDDFGSGYSSLNMLKDISADVLKIDMGFLRKSENEVKGQD 700

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IL SII +A  I   +I + +  +  +  LT MGC   Q  + + P+  +   +
Sbjct: 701 ILESIITLAGKIGMDVITEGVETKKQLDMLTMMGCHEFQGYYFSKPVPVSEFEE 754


>gi|330985451|gb|EGH83554.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331008251|gb|EGH88308.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 656

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMQEA-LAQRTGLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   + + +  
Sbjct: 271 GHRTGDRLLMLVAERLTSASSDTVHVSRLGGDEFALVIKGDISNDALLAFGKHLCELMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++GFA++ ++   ++++ + A+ A+Y  K         F  S     
Sbjct: 331 SFELSDMPIQIGATLGFATFPATADNATQLFEFADYALYQGKDHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E Y+++ PII     E V  EAL +W  P+ G++S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFYVLFQPIIESCTRETVAFEALARWKSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALKRALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFEQTLVWIE 640


>gi|84393591|ref|ZP_00992344.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           12B01]
 gi|84375800|gb|EAP92694.1| c-di-GMP phosphodiesterase A-related protein [Vibrio splendidus
           12B01]
          Length = 792

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 188/448 (41%), Gaps = 16/448 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   + +     A  D LT I NR  F   +   L       N +  V+  D+D +K +N
Sbjct: 327 ELDNTYQQTKLLAENDQLTQIANRHQFQTFVQQSL--PKPSSNTKTWVLYFDLDNFKFVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLKIA-D 632
           D  G  +GD +LVS  +RI ++            + ARLSG+ F + + +      IA  
Sbjct: 385 DKYGHQIGDSILVSFAQRISDICSHYKTEFDAHCMPARLSGDEFVVYINAPTRQGNIAHR 444

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           F+ ++   +            +T SIG A++ +   +  ++L NA+ AMY AK  G N  
Sbjct: 445 FSDSLLTPLQKGFITESGSFPITVSIGIATYPNDGHSIEKLLSNADTAMYQAKRAGKNQF 504

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +     ++ +    I+  L     + E  LVY P +      ++G+E L++W+  + G
Sbjct: 505 ADYSRDLDKAIQRQANIERALRDKNFDDEFRLVYMPYMDSAGTHVIGVEVLLRWNSEQLG 564

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE+  +   ++ ++++         + Q     I + IN++S  +   +L
Sbjct: 565 LVPPDEFIPIAEQTGLFDQVDQWVIQNAFASFHRLQAQF-DHSIQLSINLSSAGIETTDL 623

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++         PS I    +E+    N E    LL  L  +G  L +DDFG+  + +
Sbjct: 624 ADFIKEHADLNRIPPSLIDFEITET-FYSNSEGF-PLLNELSDMGYRLAIDDFGSGYTSI 681

Query: 871 SYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           + L   P   +K + + +          I++ +I +       + A+ I  E   + L  
Sbjct: 682 TQLVQYPTQKIKLDKAFLDTLIETDNQNIVKPVIGLCHAQGKKVTAEGIETESMHRWLQE 741

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
             CD +Q  +   P+    +    ++  
Sbjct: 742 AQCDMLQGYYFGKPMPLEELSDWYRQHQ 769


>gi|298380615|ref|ZP_06990214.1| cAMP phosphodiesterase [Escherichia coli FVEC1302]
 gi|298278057|gb|EFI19571.1| cAMP phosphodiesterase [Escherichia coli FVEC1302]
          Length = 804

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/522 (23%), Positives = 227/522 (43%), Gaps = 38/522 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 306 NGMPLHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRIRALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +A+ +  +   + L ++ C  IQ    + P      L  L  
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPYPPKKFLAGLAA 801



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 GPIRNWLPYIH--IND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G   + L  I     D R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQIRQ 264



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|254497075|ref|ZP_05109899.1| hypothetical protein LDG_1494 [Legionella drancourtii LLAP12]
 gi|254353702|gb|EET12413.1| hypothetical protein LDG_1494 [Legionella drancourtii LLAP12]
          Length = 579

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/432 (22%), Positives = 202/432 (46%), Gaps = 10/432 (2%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LT +PN +   + +TT  + +  + + +  V    ++   KIND +G      
Sbjct: 145 YQATHDLLTELPNERLLYEHITTATERAVRN-HYKFAVACFSLNGMVKINDSIGHQAATT 203

Query: 591 VLVSLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           ++   ++R+  LL+      ++    + F I++   ++  +I ++   +   +  PI + 
Sbjct: 204 IINRASQRLAHLLQQKKNYFVSLSRQDVFVILIEPISDVFEIENYVQNLFVILNNPIYVA 263

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVM 706
           ++ I ++ SIG + +  +      ++ NAE A   A  RGGN +  + +  ++  + ++ 
Sbjct: 264 KQSIKLSGSIGVSVFPDNGRDVDTLITNAEAARVLATQRGGNSICIYNIVINADAARQLR 323

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  L  AVE +EL L Y P I L    + G EAL++W +P  G ++  +F+ IAE   M
Sbjct: 324 IENMLYQAVEKNELILNYQPFIDLRTGRVCGAEALVRWQNPVLGLVAPMDFIPIAEMNGM 383

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  ++L    + +  W++        + +N+++K L+  +L + +  ++     +P 
Sbjct: 384 ILPIGEWVLRAACQQLKEWQNSGFNT-FKMSVNLSAKQLIQEDLVDCIAEILDTLKLNPQ 442

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ES V  N   +  ++ +L ++GI+  +DDFGT  S  S L     D +K +  
Sbjct: 443 YLELELTESNVFNN--EAIPIINKLAEMGIAFAIDDFGTGYSEFSNLKLFKVDKIKIDKI 500

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           I+ + I +A  +    +A+ +  E   + L   GC  +Q  + ++PL
Sbjct: 501 FVQDLNVNIDSRNIVCNTIALANRMHIDCLAEGVETEEQTQFLKENGCYIMQGYYFSTPL 560

Query: 945 GFNSILKLLKER 956
                   LK+ 
Sbjct: 561 SAEDFFVFLKKY 572


>gi|154249169|ref|YP_001409994.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Fervidobacterium nodosum Rt17-B1]
 gi|154153105|gb|ABS60337.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Fervidobacterium nodosum Rt17-B1]
          Length = 850

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 237/563 (42%), Gaps = 25/563 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D V         +        + G +   + G I +    I   D  N   
Sbjct: 300 FDSLFDNVPDGVVIIKEDGTILKCNRQFLEMFGYSKDEVIGEIID--NLIVPEDLSNEPK 357

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-----NGDILRYIGIANDITE 521
           +L   V  ++  L+ E   +  D +   + + +  + N+     +           DIT 
Sbjct: 358 LLRELVKNQK-TLRVETIRKRKDGKKIEVRLTVAKIKNNNTNNNDKAEDLIYAFYTDITS 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++L  +     +D LTG+  R  FL RLT++ + S         +++IDID + +IN 
Sbjct: 417 EKEALNIVRNTLQKDMLTGLYTRSYFLRRLTSLSEFSLI--GDHHGIILIDIDNFSQINI 474

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-----ENNSLKIADFAIA 636
           +   A GD++L  +  RI   L+  DI++R   + F II+       +     I +    
Sbjct: 475 LKNHAFGDEILRQVALRIKNSLREGDIISRPYADEFWIIIEKAGKNYQQAREVINNIVSK 534

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           +   I+ P  +    I +  S G   ++     + E+++ A LA+  AK         + 
Sbjct: 535 IFNEISKPYYIDGEVIELKFSSGLHVFSI-IDNADEVMRKANLALKRAKSSKDKIIFYNI 593

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            + +   ++   + DL  A  N EL +   PI +  D+ IVG EAL++W       +   
Sbjct: 594 LIDNELQEKSTKERDLREAFHNRELKIFLQPICKY-DKTIVGAEALLRWVKKDGSVLPPI 652

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ + EE  MI ++   +L ++   +    +       FI IN++   L D ++ E   
Sbjct: 653 EFIQLLEENGMIVSVGEEILRQVCEVLSENNELK-----FIDINVSPVQLRDEKMAERFF 707

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++S     PS+I +  +E++++   +  +  + +L K G  L +DDFGT  S L+YL  
Sbjct: 708 NIVSSYEIDPSKIVIEITENILIDMNDIVKNNIDKLLKYGFELCIDDFGTGYSSLAYLTL 767

Query: 876 IPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K + S +    + R +I  L +I  +AK  +   I + +  E  ++ L+ +G  
Sbjct: 768 LPLKKIKIDKSFVFRLPDDRKSIKLLEAIYNIAKAFQLEAIPEGVENEKQLEILSMIGYK 827

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q      P+     LK L + 
Sbjct: 828 LFQGFFFGKPVPTYEFLKRLTKE 850


>gi|73537489|ref|YP_297856.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
 gi|72120826|gb|AAZ63012.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
          Length = 442

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/426 (24%), Positives = 197/426 (46%), Gaps = 8/426 (1%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  FL RL   L   A     R  +++I ID ++  ND+ G A GD +L  
Sbjct: 18  TDPLTGVGNRLGFLKRLEARLHSEAV---PRCALLLIGIDDFRAFNDMHGHAEGDLILQG 74

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + RR+ +      ++ R+  + F ++L S ++   +     A+   +  P     R   V
Sbjct: 75  VARRLRDASPRDAVIGRIGSDEFSVLLPSISDPTLVRHVGAAILSMLTAPHEHSGRRHHV 134

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLC 712
            AS+G     ++   +S+ L  A LA+  AKH GG  +  F+    +    R+ + + L 
Sbjct: 135 LASVGACVMPAAGDLASDALAAASLALARAKHDGGRTIRFFKPQMRQDVTTRLSLVQALH 194

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A    +  L Y P + L    I G EAL++W HP  G ++ + F+       +   + +
Sbjct: 195 EAYAQRQFELHYQPQVDLRTGHIHGAEALLRWRHPTRGLLAPASFIDALAASSVASDVGM 254

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+       +W       P  + IN+ +  L ++ L   ++ ++      P+ +++  
Sbjct: 255 WLLQTACAQARAWSLTLPQAP-RVAINLFAAQLAESRLVTEVRHVLRSLELPPAGLEIEI 313

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E++ +   +     L  LR+ G++LT DDFGT  + LS+L   P D +K + S +   T
Sbjct: 314 TETIALQQGDEVSDQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVDRLKIDQSFVRNVT 373

Query: 893 EK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +     AI+RS+I + ++++  ++A+ +        L   GC   Q      P+    + 
Sbjct: 374 QDPVDAAIVRSVINVGQSLQIGVVAEGVETVEQRDFLLANGCWEAQGYLYGRPMPAERLT 433

Query: 951 KLLKER 956
           + L+E+
Sbjct: 434 EHLREQ 439


>gi|225018276|ref|ZP_03707468.1| hypothetical protein CLOSTMETH_02214 [Clostridium methylpentosum
           DSM 5476]
 gi|224948973|gb|EEG30182.1| hypothetical protein CLOSTMETH_02214 [Clostridium methylpentosum
           DSM 5476]
          Length = 863

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 104/437 (23%), Positives = 207/437 (47%), Gaps = 14/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    ++     D LTG+ +++ F  ++  IL     + + +  ++  DI+ +K INDV 
Sbjct: 126 RETAAMINLIQYDRLTGLYSKEFFYQQVRKILL---RNPDKKYDILCSDIENFKLINDVF 182

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI  GD +L  + +   + +K   I  R++ ++F  ++    +      + I +   +  
Sbjct: 183 GIPTGDRLLCGIAQLYQQEVKGKGICGRINSDQFVCLIERRWDYSN--TYFINVVARVNE 240

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
            +++      +    G  S     +   +    A LA    K + G +   +     +  
Sbjct: 241 LLDVQN----IVMKWGIYSIQDHSLPVEQACDRALLAARSIKGQYGKYFAKYDDTLRNRL 296

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I + +  A++ ++ ++   P  R+ DE +VG EAL++W HP+WG  S +EF+ + 
Sbjct: 297 LKDQAITDSMESALDKNQFHIYLQPKYRIQDESLVGAEALVRWIHPEWGFQSPAEFIPLF 356

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  ++ F+ +R    +  W D   +PPI + +N++  D+ + +L + +  +  K 
Sbjct: 357 EKNGFITKLDQFVWDRACAVLRDW-DNKGLPPISVSVNVSRADIYNADLADILMKITRKY 415

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PSR+ L  +ES    NP +    +GRLR +G  + +DDFG+  S L+ L  +P D +
Sbjct: 416 NLPPSRLHLEITESAYTENPRQIIDTVGRLRDLGFVIEMDDFGSGYSSLNMLNELPIDIL 475

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +   T       IL+ II +A+ +  +++A+ +  +  +  L  +GCDY+Q  +
Sbjct: 476 KLDMKFIQNETAKPNSQGILQFIIDLARWMHLSVVAEGVETKEQLARLEEIGCDYVQGYY 535

Query: 940 VASPLGFNSILKLLKER 956
            A P+       LL E+
Sbjct: 536 FAKPMPHKEFEALLAEQ 552



 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 8/176 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+        A++D LTG+ NR+     L ++       ++L   V + D+D  K  ND 
Sbjct: 694 KERTRFFQDAAYKDYLTGVFNRRGLEAALDSL-----NKNDLPLAVYLFDLDNLKWCNDT 748

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L      + E  +  D+++R+ G+ F  I+    +          +  ++ 
Sbjct: 749 FGHAEGDRILTWFGTVLREHTQEKDVISRIGGDEFVTIIRKMPSEELAQRKGQEICTTVQ 808

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +    EI+ +A +          T S++L  A+ A+Y AK++       ++  
Sbjct: 809 EISSRRGVEISCSAGVAIMQV---GDTISQVLNRADKALYQAKNQKKGSCRLWKEE 861


>gi|262166753|ref|ZP_06034490.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262026469|gb|EEY45137.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 841

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 203/431 (47%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    +         L   +++I IDK++ IND
Sbjct: 411 LKASFKALRSQLVYDSLTQLLSREGLVESCNQL-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+++++R+      P ++AR+ G+ F I L   N   ++   A  + K  
Sbjct: 464 SLGHHQADQLLIAISQRLKLTFPTPALIARIGGDEFAIYLPDVNQHDELKCVAANILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           A P ++    I V  SIG        +T    L+N  +A+ +AK         S  +++ 
Sbjct: 524 ASPFSMPSDNIAVNVSIGLVCLEEPNMTV--WLRNGSIALSNAKVDHAHISFYSPEMANA 581

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +   + LA++N E    Y PI+ L   E++G EAL +W  P++G IS  EF+ I
Sbjct: 582 SRKRMQMVTQIKLALDNREFVPFYQPIVDLHSGEVLGAEALARWISPEFGLISPLEFIPI 641

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +        I +N++   L   +    +  ++ 
Sbjct: 642 AEESGLINAIGEQILRQACFDTVRGMSEHKWPATFHIHVNLSVNQLSHPDFIAQLHNILE 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ +       +  L+K GI + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESGLQPANLTLEITESRIVYSDPVILHNMLELKKAGIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ +  +  +  LT++ C   Q 
Sbjct: 762 CLKIDREFVSQLNTHNLENSVVAAIVNMTRGFKVELVAEGVETQEQVDLLTKLDCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPMAYQD 832


>gi|241760952|ref|ZP_04759041.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374571|gb|EER64032.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 683

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 219/444 (49%), Gaps = 15/444 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T +K+  +   C    D+ TG+ NR+ F   L   ++    DD++  ++ +IDID +K+
Sbjct: 246 LTIEKEIEQQASC---YDSTTGLANRRQFFADL-QAVNSPYRDDSIPFSIGIIDIDGFKR 301

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G  +GD +L  +  R+   L+   ++ R+  + FG IL  +  S  +     ++ 
Sbjct: 302 INEIYGHDIGDFILDKIGHRLYLALRHKALVYRIGNDEFGFILPGDKESTILNQEIASIL 361

Query: 639 KSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGNHV---ES 694
           ++I+ PI+    +I ++ S G A S+  +  ++ ++ ++A+ A+Y+AK +GG        
Sbjct: 362 ETISHPISARNNQIVISCSAGCARSYFGTANSTQQIFEHADYALYYAKEQGGQGQIVVFD 421

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +  +I+  L  A  + E ++ + PII   +  I+  E+L +WD P  G I+ 
Sbjct: 422 VNHELKLKELALIERALEKADFDKEFFIQFQPIIDSRNGGIITFESLARWDSPGLGRIAP 481

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AE+   I  +   + ++   +   W        I +  N+++ D+   +    +
Sbjct: 482 DKFIQVAEQTGAIIRLTPILFKKALNEAKKWPHS-----IKLSFNLSAHDISHEKQINLL 536

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ ++   P RI+   +E+ VM N   +   + +L+ +G S+ LDDFGT  S LS+L 
Sbjct: 537 LDILKQSNIDPERIEFELTETAVMHNFAAAFDNVKKLQAVGASIALDDFGTGYSSLSHLQ 596

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P + +K + S +T      +   I++SII + + I    +A+ +  +  +  L  +G 
Sbjct: 597 NFPLNKIKIDRSFVTNLEYNNRNYKIIKSIIILCREIGLDCVAEGVEDKEKVDLLAHLGV 656

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             IQ  + +SPL   S    ++ R
Sbjct: 657 YLIQGYYYSSPLSAESAQVYIRNR 680


>gi|288919857|ref|ZP_06414181.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EUN1f]
 gi|288348772|gb|EFC83025.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EUN1f]
          Length = 1214

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/472 (23%), Positives = 212/472 (44%), Gaps = 44/472 (9%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            L+     A  D LT +  R         ++  +          ++IDI++++++ND LG
Sbjct: 162 LLQWGRRQAHSDPLTSLVARSGLAHVADPLIAGARQRGE-EVAFLLIDINRFREVNDALG 220

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--------------------- 623
              GD++L    R +  +   P ++ RL  + F +++                       
Sbjct: 221 HEGGDELLRQFARALARVKPCPSLIGRLGSDEFALVITGPPGGPTGPGDPGAPDTAAGSG 280

Query: 624 ----------------ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
                           +     + D A+++   +  P ++    + V AS+G A      
Sbjct: 281 GPGDPAGTVGDQTQATQRRDRNLRDLAMSVLSQLEGPFDVRGTSVGVEASVGLAVAPRDG 340

Query: 668 ITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
            T++ +L  A++A+  AK  G    +    ++  RS  + +  +L  A+   EL + Y P
Sbjct: 341 ETTAALLPCADVALSRAKREGERVGLWDVGIAGVRSWEISLYTELRTAIARDELIVFYQP 400

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
              +    IVG+EAL++W HP  G +    F+ IAE   +I A+  ++L+   R    WR
Sbjct: 401 Q-AVATGRIVGVEALVRWRHPTRGLLPPGAFLPIAERSALIGAMTRWVLDEALRQCAVWR 459

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
            Q    P  + +N++ + L+ ++L + + A +++    P  + L  +ES ++  P R+  
Sbjct: 460 GQGLHVP--VSVNLSPRMLVLDDLPDLVTAALARHRLPPDLLTLEITESALVTQPGRAAA 517

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           +L  LR  G+ L+LDDFGT  S +  L  +PFD VK +   +     + +  AI+RS++ 
Sbjct: 518 MLRELRSKGVKLSLDDFGTGYSSMEMLKALPFDEVKIDRGFVVDVRGSLQDAAIVRSVLD 577

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +   +   ++ + +  E  ++ +T +GCD +Q   ++ P   + +  LL ER
Sbjct: 578 LGHRLGLRVVGEGVEDERTLRLMTELGCDILQGDAISRPRSPDGLAGLLAER 629


>gi|258620378|ref|ZP_05715416.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258587257|gb|EEW11968.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 841

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 204/431 (47%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    +         L   +++I IDK++ IND
Sbjct: 411 LKASFKALRSQLVYDSLTQLLSREGLVESCNQL-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+++++R+      P ++AR+ G+ F I L   N   ++   A  + K  
Sbjct: 464 SLGHHQADQLLIAISQRLKLTFPAPALIARIGGDEFAIYLPDVNQHDELKGVATNILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           A P ++    I V  SIG        +T    L+N  +A+ +AK         S  +++ 
Sbjct: 524 ASPFSMPSDNIAVNVSIGLVYLEEPNMTV--WLRNGSIALSNAKVDHAHISFYSPEMANA 581

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +   + LA++N E    Y PI+ L + E++G EAL +W  P++G IS  EF+ I
Sbjct: 582 SRKRMQMVTQIKLALDNREFVPFYQPIVDLHNGEVLGAEALARWISPEFGLISPLEFIPI 641

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +        I +N++   L   +    +  ++ 
Sbjct: 642 AEESGLINAIGEQILRQACFDTVRGMSEHKWPATFHIHVNLSVNQLSHPDFIAQLHNILE 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ +       +  L+K GI + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESGLQPANLTLEITESRIVYSDPVILHNMLELKKAGIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ +  +  +  LT++ C   Q 
Sbjct: 762 CLKIDREFVSQLNTHNLENSVVAAIVNMTRGFKVELVAEGVETQEQVDLLTKLDCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPMAYQD 832


>gi|170752119|ref|YP_001758379.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658641|gb|ACB27696.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 557

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/464 (23%), Positives = 205/464 (44%), Gaps = 11/464 (2%)

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
               +R RP++   G     +    D+T   +    ++  AF D LTG+PNR  F   + 
Sbjct: 70  RMFEVRTRPVAG--GRDAFTLTTLTDVTHHHRIQRELITKAFIDALTGLPNRTMFEQSIA 127

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            +L  + +    R  +  ID+D +K IND    A GD +L  ++ RIG  L+  D+LAR+
Sbjct: 128 DVL--AGSAPGDRFALAFIDLDNFKHINDYYSHAAGDALLRKMSDRIGGALRPSDLLARI 185

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L    +  +      A+ + +  P  +   EI  +ASIG + +     +   
Sbjct: 186 GGDEFVLLLAPITDRDEALSAVRAISERLKQPFFIDGHEIFASASIGLSLFPEHGDSYET 245

Query: 673 MLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           + + A+ AMY  K    GG  +    +S   + R+ +++ L LA+ +      + P + +
Sbjct: 246 LARQADNAMYRVKGELKGGVSLFDDAMSQAATARMAVEQRLRLAIRDRCFCCAFQPKVDM 305

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               + G+E L++W        +  +F+ +A EL +I  I L +L    + +    +   
Sbjct: 306 RSHAVTGVEVLLRWRDELGMIQAPGDFIALAIELGLINEITLQLLSETVQAMPDIDEVFG 365

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            P + + +NIA+K   D        A + +T     R  L  +E            +L +
Sbjct: 366 -PDVTVSLNIAAKQACDVPFMTAFCASLGETGL-AERFVLELTEEAFFTTGRFQSEVLPK 423

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKN 908
           +R IG  +++DDFG   S L+ L  I  D +K + S +T      +   +L++I  +   
Sbjct: 424 IRAIGARVSIDDFGVGYSSLAALADITADELKIDRSFITDIDKRPRSQIVLKAIESLGAA 483

Query: 909 IETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSILK 951
           +  T++A+ +    ++  L         Q  + A PL  + I +
Sbjct: 484 LGMTVVAEGVETFEEVAYLLGATQIRCAQGYYFARPLLLDQIRQ 527


>gi|313200780|ref|YP_004039438.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Methylovorus sp. MP688]
 gi|312440096|gb|ADQ84202.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Methylovorus sp. MP688]
          Length = 641

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/596 (22%), Positives = 229/596 (38%), Gaps = 20/596 (3%)

Query: 366 IIQPALVGGLVLIVILIGFTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           +I   L     L+  +IG + + H L       Q +F + +R    +    D V   D  
Sbjct: 55  LILNTLTPLWDLLGNIIGASRVVHDLTENNRIRQALFMEQQRWHAMLSAVRDAVITTDQR 114

Query: 425 RDRVTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                 +     +LG     + G   R+++     + +      LD  +   R  L    
Sbjct: 115 GHIEFLSAAAERLLGQPLSRIGGQPLRHFISLADGSLQAGIDEALDLSMREMR-SLDIPL 173

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           RV A       +   I P+S         I +  +  EQ  +          D LTGI N
Sbjct: 174 RVLAGHASPI-LKSTISPLSPEGRQTPGTIIVLQE--EQTPAPGQPEL----DPLTGIHN 226

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R +   RL   L  + T        M +D+D++K +ND  G AVGD +L  +   I   L
Sbjct: 227 RTALETRLQAALASAHTQGEQHM-FMYLDLDQFKIVNDTCGHAVGDSLLKQIVSIIRGCL 285

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               +LARL G+ F I+L+  ++            +  A      ++   V+ASIG    
Sbjct: 286 STDALLARLGGDEFAILLLCCDSDAAGKIADDICNRIEAFRFAHEQKRFHVSASIGLVRI 345

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSE 719
                  S +L+ A  A Y AK  G N    +R +        + +     L LA+E + 
Sbjct: 346 DHQWQDISALLQIANAACYTAKQEGRNRTHLYRDTDFAIKKHHEEIQWVNRLELALEENR 405

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKW--GNISSSEFMLIAEELCMIKAINLFMLER 777
             L    I+ L +   +  E L++        G I +  FM  AE   +   I+ ++ +R
Sbjct: 406 FSLYCQRILPLNENSGIHGEILLRLPDGNGNGGMIPAGAFMPAAERFHITSRIDRWVTKR 465

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           +   ++      +   + + +NI+ + + D    + M  LI  T  + S++    +E+  
Sbjct: 466 VLHWLMQHEHVIDHIDV-LSVNISGQSIGDRAFHDYMLELIVSTPATYSKLCFEITETAA 524

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--R 895
           + N   +   +  +R+ GI  +LDDFG+  S   +L  +  D +K +G  +         
Sbjct: 525 ITNLADANSFIASMRRFGIRFSLDDFGSGVSSFGHLKNLDVDYLKIDGQFIRAIDSNVID 584

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            A+++ I  +A       IA+ +        L  MG  Y Q      P   + +LK
Sbjct: 585 QAMVQCICEIANGTGLKTIAEYVETVEVENLLRGMGIHYTQGYLRHKPAPLDEMLK 640



 Score = 43.0 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 98/337 (29%), Gaps = 61/337 (18%)

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           + G +S  + G    +        +   ++ L+     R   + +E      +     ++
Sbjct: 1   MFGYSSLEVIGQP--FSALCTQEQQAQEKSRLNKMRESR-CIMHFETEHVHKNGSMLLIL 57

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT-TIL 555
             + P+ +  G+I+    + +D+TE  +  +                   F+++     +
Sbjct: 58  NTLTPLWDLLGNIIGASRVVHDLTENNRIRQ-----------------ALFMEQQRWHAM 100

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +  D      V+  D           G     + L +   R+         L+R+ G 
Sbjct: 101 LSAVRD-----AVITTD---------QRGHI---EFLSAAAERLL-----GQPLSRIGGQ 138

Query: 616 ---RFGIILIS--ENNSLKIADFAIAMRKSIAMPIN-LLEREITVTASIGFASWTSSKIT 669
               F  +     +    +  D ++   +S+ +P+  L      +  S         + T
Sbjct: 139 PLRHFISLADGSLQAGIDEALDLSMREMRSLDIPLRVLAGHASPILKSTISPLSPEGRQT 198

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHP- 726
              ++    +         G               +   ++  L  A    E ++  +  
Sbjct: 199 PGTII----VLQEEQTPAPGQPELDPLTGIHNRTALETRLQAALASAHTQGEQHMFMYLD 254

Query: 727 -----IIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                I+       VG   L Q      G +S+   +
Sbjct: 255 LDQFKIVNDTCGHAVGDSLLKQIVSIIRGCLSTDALL 291


>gi|302865564|ref|YP_003834201.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315502115|ref|YP_004081002.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
 gi|302568423|gb|ADL44625.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|315408734|gb|ADU06851.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
          Length = 730

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 201/427 (47%), Gaps = 13/427 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D LTG+PNR +F+          A        V+++D+D +K++ND  G A GD +L
Sbjct: 306 AYSDQLTGLPNRLTFV-----RRLRRALRGGGPVAVVLLDLDGFKQVNDRFGHAAGDRLL 360

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            +   R+ + +    ++ARL G+ F +++  E   +     A+ +  ++       +  +
Sbjct: 361 TTTAERMRDAVGPDGMIARLGGDEFAVLVAGER-PVSPEGLAVRLLAALEPLPGEEDLGV 419

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKED 710
             +ASIG A +     + +++L++A++AMY AK  G     +           R  +  D
Sbjct: 420 HPSASIGIAEYGPQHTSHTDLLRDADIAMYAAKAAGKAAYRTCTPELRESAVSRAELIAD 479

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  AV+  +L + + PI+ L    +   EAL++W HP+ G ++ + F+ +AEE  +I AI
Sbjct: 480 LRRAVDEGQLLMEFQPIVDLDTGTVRSAEALVRWRHPRLGVLTPARFLPLAEETGLIVAI 539

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + +++    R   +WR+ A  P + + +NIA+  L   +L   +   +      P  + L
Sbjct: 540 DRWVIHEACRAAATWREHA--PDVTVAVNIAAAHLCRPDLIATVTGAVGAAGLPPRALTL 597

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES ++   E     L +LR +GI + +DDFGT  S LSYL  IP   +K + S ++ 
Sbjct: 598 ELTESALIEGSESVLDRLSQLRDLGIRIAIDDFGTGYSSLSYLHRIPATELKIDRSFVSR 657

Query: 891 STEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    A +  +  +A   +  ++A+ +        +T +GC   Q      P    
Sbjct: 658 LDAGDARAYATVEMVNRLAGAFDLAVVAEGVETVAQHAAVTAIGCRQGQGWRYGRPAALP 717

Query: 948 SILKLLK 954
            +L  L 
Sbjct: 718 DLLPALS 724


>gi|262164863|ref|ZP_06032601.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262027243|gb|EEY45910.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 674

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/525 (21%), Positives = 226/525 (43%), Gaps = 17/525 (3%)

Query: 438 LGLASGSMHGPI---RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           L   +G + G +        + H  D+   R   +S     +   Q E  ++   +    
Sbjct: 153 LQWPNGDLFGTLCATDRREHHFHATDQQLIRAFRESIEAQLKTLYQRETLLQMNQDLHFK 212

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +++ +++ N  +        +I +++ + + I      D  TG  NR +   +L  +
Sbjct: 213 VRNKMQSIASLNQSL------HQEIDKRRAAEQQIEYQRSHDVGTGFLNRSALEHQLDEL 266

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L      D     V+ I     +++   LG  + DDVL  L  RIG ++    I AR + 
Sbjct: 267 LT--QLGDTCELAVLHIGFANVRQLQARLGYHLWDDVLKQLRERIGPIIDAELITARPTS 324

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               ++L S      +      +         +    + +   IG A    +     ++L
Sbjct: 325 TNLTLVLKSTQLDAHLNLLCHKLIHVGQAQFQIEGVTVHLNPYIGVALSRETH-DPQQLL 383

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +A  +M   K  G      S  ++   + +  ++  L  AV N++L L + P + +  +
Sbjct: 384 SHAVSSMIACKDSGYKVFFHSPAIADDHARQNQLENYLLHAVRNNDLMLYFQPKVSVKTQ 443

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W HP  G  S+   + +AE+  +I  +  F+L +  +    W      P 
Sbjct: 444 HWVGAEALLRWKHPVLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLS--ICPT 501

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++S  L ++   E +  L++   +   +++L  +ES ++ +   +  +L RL  
Sbjct: 502 FRIAINVSSVQLKNSRFVEQIHDLLTFYHFPAHQLELEITESGLIVDEPTAIDILNRLHG 561

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G++L+LDDFGT  +   YL   PFD +K + S +     +E    I+RS++ +AK ++ 
Sbjct: 562 LGVTLSLDDFGTGYASFQYLKKFPFDGIKIDKSFLEQIEHSENDQEIVRSMLHVAKKLKL 621

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++A+ I  +   + +   GCD  Q      P+  ++  + LK+ 
Sbjct: 622 KVVAEGIETKQQEQFILEHGCDIGQGFLYGRPMPSDAFEQKLKQH 666


>gi|315444399|ref|YP_004077278.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
 gi|315262702|gb|ADT99443.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
          Length = 782

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 157/797 (19%), Positives = 299/797 (37%), Gaps = 100/797 (12%)

Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF---MYLH 274
           L     +   VL  +++D G  +  +      L +    +  A+ ++L         +  
Sbjct: 16  LPAAACIGLAVL--LAVDRGGSAVPLIDDITILGLSTYATVCAVLAALSAAGRMRTAWAI 73

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
                          + C  +L    F  P     +A   LA   L           +  
Sbjct: 74  MAAALGSWAVADLIWLLCDYVLHIEPFPSPADLFYLAFSVLAVPGLLAMAPFDALARRQA 133

Query: 335 ERAV----------LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
           +  +          + + AW+L        +   T  L   ++ PA      ++++ +  
Sbjct: 134 KIRITLDGITVALCVFLLAWLLALNTVYETYRDDTLTLALALLYPA----ADIVILAVSV 189

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            V+  V      + G+       + AV+   D  + + +  D   TT  I  + G A  S
Sbjct: 190 AVLARVDTRQRATLGLLV----VAFAVMAVTDSTFAYGVAEDS-YTTGSIIDV-GWAVSS 243

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW-------MII 497
               +   +       R    ++                          W       +  
Sbjct: 244 AMIGMAALVSRRTPAPRPATLSV--------------------PSGTALWAPYLPLLVAG 283

Query: 498 RIRPMSNSNGDILRYIGIANDIT----------EQKKSLEGILCNAFQDNLTGIPNRQSF 547
            + P   + G + RY+  A  IT          E ++ L+     + +D LTG+ N   F
Sbjct: 284 IVVPPLVTTG-LERYVAPAIVITVCLRQFFAAWENRQWLKAAAERSLRDPLTGLANGTLF 342

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            DRL   + L A   +    V+ +D+D +  +ND LG    D +LV   RRI   ++  D
Sbjct: 343 HDRLRHAMMLHAR-GDPSVMVVSLDLDDFAFVNDNLGHPAADRLLVHAGRRIAACVQPGD 401

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW--TS 665
            + R++G+ F ++L    +          +  +   P ++    +T+  S+G A      
Sbjct: 402 TVGRVAGDEFALLLEG--DVHDSQRVLQRVVATFDEPFDVDGEPVTIRCSVGVAVAFADE 459

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--------------------- 704
            ++T   MLK A++A+  AK      V  F                              
Sbjct: 460 PEVTPETMLKRADIAVRVAKRSHFPRVRFFEDDIEDDFEDDMATIDSDAAQGGDRSTDRV 519

Query: 705 -------VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  V +  +L  AV+  +L L Y P + L+  ++VG+EAL++W HP+ G +    F
Sbjct: 520 ALTGAAKVRLLSELRRAVDQGDLELAYQPKVDLVSGQVVGVEALLRWPHPELGLLYPGTF 579

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           M +  E  +I+ +   +++++  D   W       PI + +N+ +  L+D  L   ++A 
Sbjct: 580 MPLVREHKLIRPVTDLVIDKVLDDAARW--VGTGAPIPVAVNLFAPSLIDARLPATLRAA 637

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       + +  +E +V+ + ER   +LG+LR  GI +++DDFG+  S LSYL  + 
Sbjct: 638 LERRGLPAELLTVEITEDLVINDLERVTAVLGQLRDHGIRVSIDDFGSGYSALSYLRDLL 697

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    +  +   ++R+II +   +  T++A+ I        L   GCD  
Sbjct: 698 IDEIKLDRSFIAAVTTDPRAAVVVRAIIELTHGLGMTVVAEGIEEAATANWLRDSGCDIG 757

Query: 936 QDSHVASPLGFNSILKL 952
           Q  +   P+    +  L
Sbjct: 758 QGFYFGKPVDPADVPSL 774


>gi|258624611|ref|ZP_05719547.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583075|gb|EEW07888.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 841

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 203/431 (47%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    +         L   +++I IDK++ IND
Sbjct: 411 LKASFKALRSQLVYDSLTQLLSREGLVESCNQL-------PQLNGGLILIGIDKFRDIND 463

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+++++R+      P ++AR+ G+ F I L   N   ++   A  + K  
Sbjct: 464 SLGHHQADQLLIAISQRLKLTFPAPALIARIGGDEFAIYLPDVNQHDELKGVAANILKLF 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           A P ++    I V  SIG        +T    L+N  +A+ +AK         S  +++ 
Sbjct: 524 ASPFSMPSDNIAVNVSIGLVYLEEPNMTV--WLRNGSIALSNAKVDHAHISFYSPEMANA 581

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +   + LA++N E    Y PI+ L   EI+G EAL +W  P++G IS  EF+ I
Sbjct: 582 SRKRMQMVTQIKLALDNREFVPFYQPIVDLHSGEILGAEALARWISPEFGLISPLEFIPI 641

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +        I +N++   L   +    +  ++ 
Sbjct: 642 AEESGLINAIGEQILRQACFDTVRGMSEHKWPATFHIHVNLSVNQLSHPDFIAQLHNILE 701

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ +       +  L+K GI + +DDFGT  S L+YL  +PFD
Sbjct: 702 ESGLQPANLTLEITESRIVYSDPVILHNMLELKKAGIHIAIDDFGTGYSSLAYLHKLPFD 761

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ +  +  +  LT++ C   Q 
Sbjct: 762 CLKIDREFVSQLNTHNLENSVVAAIVNMTRGFKVELVAEGVETQEQVDLLTKLDCPRGQG 821

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 822 FLFSKPMAYQD 832


>gi|114563089|ref|YP_750602.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114334382|gb|ABI71764.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 520

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 217/434 (50%), Gaps = 12/434 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
             NA  D+LTG+PNR+  +D L+  +     +  L  ++++ID++++K++ND LG   GD
Sbjct: 88  RSNALHDSLTGLPNRKYLMDSLSQHV-----NAGLPFSLLLIDLNRFKQVNDALGHYYGD 142

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L+ + + I E L     L RL G+ F +I+        +      +  ++     +  
Sbjct: 143 LLLIEVGKNISEHLPDDSQLFRLGGDEFAVIVTQV-ELEPLQHTINTIHLALESAFCIEN 201

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIK 708
            ++ V ASIG + +         +L+ A++AMY +K       +    + +  ++++ I 
Sbjct: 202 YDLLVGASIGLSHFPILANEIGLLLQQADIAMYSSKKLATLYTIYDLTLENNAAEKMNIS 261

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+E  E  L Y PII L +  + G+EALI+W  P       S F+ IAE+  +I 
Sbjct: 262 ASLKRAIEQQEFELWYQPIINLRNNRLYGVEALIRWPRPDGSYTPPSVFIHIAEQTTLIN 321

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++++++A+D+  +        + I +N+++KDL D  L     +L+     S  +I
Sbjct: 322 QITDWVMQQVAKDVEHFESLG--LSLCIHLNLSAKDLQDPNLVNKSISLVKGNH-SSQKI 378

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               +ES +M N E+++  + ++   G + ++DDFGT  S L  L  +P   +K +GS +
Sbjct: 379 MFEITESAMMTNVEQAKGAMAQITAAGGTFSIDDFGTGFSSLELLRDLPVTQIKIDGSFI 438

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI++S+I ++K+++  ++A+ +        L  +GCD  Q  + + P+  
Sbjct: 439 NSIHHSDADLAIVKSVIFLSKHLKCNVVAEGVERSATATLLASLGCDLAQGYYYSKPIPI 498

Query: 947 NSILKLLKERFPLV 960
           +S    ++E+  + 
Sbjct: 499 SSFANYIQEQQSVS 512


>gi|261253080|ref|ZP_05945653.1| EAL domain protein [Vibrio orientalis CIP 102891]
 gi|260936471|gb|EEX92460.1| EAL domain protein [Vibrio orientalis CIP 102891]
          Length = 591

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 207/428 (48%), Gaps = 11/428 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +  D LT +PNR++F +     +      D +    + I +D  KK+ND LG   GD +L
Sbjct: 170 SLTDYLTKLPNRKAFFN----AVHELKACDTVDYAALQIGLDNLKKVNDDLGYGYGDALL 225

Query: 593 VSLTRRIGELLKFPDILARLSGNR-FGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           +  +R++  LL   + L RL G+    +I  ++ N  ++ +    +R +      +    
Sbjct: 226 LGFSRQMKRLLGESNQLYRLGGDDLIALIKCTDGNQNELNELIEGLRVNYDSVCQIHNTS 285

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKE 709
             +    G A  + ++       KN ++A+  +K +G   ++ +     +       I+ 
Sbjct: 286 HRLRYYAGIAMLSDAQNNIKVWGKNVDVALAKSKRKGDGVIQWYDDELMNETIREHQIEI 345

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A++N +++LVY P + +  +EI+G EAL++W+HP  G +   +F+ +AE+   I  
Sbjct: 346 ELKGAIDNEQMFLVYQPKVDVKSQEIIGAEALLRWEHPDLGFVPPCDFIGVAEKTAQIIP 405

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++E+  +    WR Q     I I +N++S     +++   +  ++ +       ++
Sbjct: 406 IGRWVIEQAIKQSSEWRKQGYE--ICISVNVSSVQFAHDDIYPYISEMLKRHQLPSKLLQ 463

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E+ +M            L+  G+S+ +DDFG + S L+YL  +P DTVK + S + 
Sbjct: 464 IEITETAMMDKYSHVADTCQLLQDAGVSIAIDDFGVEYSSLNYLKQLPIDTVKIDKSFID 523

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              E      I+R+II MA N+  T+IA+ +     ++ L R  C   Q    + P+  +
Sbjct: 524 DCVEDITGHMIVRTIIQMAHNLGKTVIAEGVEHTDQLELLNRENCHQFQGYLFSKPILPS 583

Query: 948 SILKLLKE 955
             ++LLK+
Sbjct: 584 EFMQLLKQ 591


>gi|213966887|ref|ZP_03395037.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301381569|ref|ZP_07229987.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061675|ref|ZP_07253216.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           K40]
 gi|213928209|gb|EEB61754.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 656

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 101/435 (23%), Positives = 209/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L   +  +      +  V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANKDSLTGLPNRRQFFQTLDAAMSEALAL-RSKLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+  +      ++RL G+ F +++  + ++  +      +   +  
Sbjct: 271 GHRTGDRLLMLVAERLNSVASDTVHVSRLGGDEFALVIKGDISNEALLALGKHLCDLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSDMPIQIGATLGMATFPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 HTDGVTEQALRRANLETEFHVMFQPIIESCTCETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALQMALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  L+
Sbjct: 626 YSPPISFAETLAWLE 640


>gi|110680851|ref|YP_683858.1| GGDEF/EAL domain-containing protein [Roseobacter denitrificans OCh
           114]
 gi|109456967|gb|ABG33172.1| GGDEF/EAL domain protein [Roseobacter denitrificans OCh 114]
          Length = 834

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/625 (21%), Positives = 255/625 (40%), Gaps = 47/625 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           + +   + + +++     G  L+++ I  T +          Q      ER   A+    
Sbjct: 223 LELAGDIHHRLLRSRAKNG-DLVMLRIDTTELVRQRRALEAVQ------ERLVSAINAYP 275

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH--------INDRDNFRTI 467
           D    +D   + V   P  A  +      +     N    +            R      
Sbjct: 276 DPFAIYDASHNLVVWNPAYARSVTDTPEKLR-TGTNLKDLLRQAAYCGRIPAARGREEEW 334

Query: 468 LDS-----FVGYRRGRLQY-------EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           L +      +       ++         R +  + ++  + + I  + N    + RY   
Sbjct: 335 LQAYYSPHLLDRSVEDFEFADGQHFRIVRSKTKNGEYVVLRLNITEVVNQRRAVERYTK- 393

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                + +++ E I   A  D LTG+ NR+    R    L  S         ++ ID+D+
Sbjct: 394 -----KLERANEEISHIAGHDALTGLGNRRHLSHRFQQ-LAESRCRQGGEIAMLHIDLDR 447

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K+IND +G A GD VL+    RI   ++  D++AR+ G+ F ++L  E  S +    A 
Sbjct: 448 FKQINDTMGHAAGDHVLLETANRIRNEVEPQDVIARIGGDEFVVLLRFETGSTRPFQLAT 507

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + K + MP+    +E    ASIG A          ++L N+++A+Y AK  G   +  F
Sbjct: 508 TLLKELQMPVYFEGKECRFGASIGVAETPL--SEVDKLLTNSDIALYKAKRAGRGRLGFF 565

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S  +       + +D+  A+E  E    Y P I      + G+E L +W HP+ G + 
Sbjct: 566 DRSDLQDILKRKTMADDILRAIEQDEFVPYYQPQIDAETGHVAGVEVLARWQHPQKGIVL 625

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ IA +L +  +I+  + E+  +D      +    P  +  N+++  + +N     
Sbjct: 626 PEAFLAIATDLNITASIDELIFEKAMKDCEGVLPRMPSCP-SLSFNVSASRVRENS-IND 683

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSY 872
           ++A +S       +I     E++ +   + + L  L RLR IGI++ +DDFG+  + +  
Sbjct: 684 IRARVSGY---SGKICFELLETMFVEEEDDAFLFQLDRLRDIGITIEIDDFGSGNASVVA 740

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  I  D +K +G L+   TE      ++RSI+ +   +E  + A+ +        L  +
Sbjct: 741 LQRIAPDRLKIDGRLIAQVTESDSGLRLVRSIVEIGLALEMGVTAEGVETREQAAVLADL 800

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD +Q    A P+ F  +L     
Sbjct: 801 GCDRLQGFLFAKPMPFEDLLSFFAR 825



 Score = 38.4 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 2/103 (1%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                      + G A   + G  R++     +         +          L  + + 
Sbjct: 31  RVAYINKGFTRLFGYAPEDLRG--RSFEEVGELQTTLRLYDAIAGEETGCAQNLSTQSQF 88

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             AD    W  I      ++  +         +I+  K +   
Sbjct: 89  TRADGTQFWASISFLTTGDNPEEDRYICATYREISALKDAEAK 131


>gi|241204066|ref|YP_002975162.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857956|gb|ACS55623.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 709

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 203/439 (46%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  +     A  D+L+G+ NRQ  L  L  +     +       + ++D+D +K +ND
Sbjct: 283 LRQLAQTARFEASHDSLSGLLNRQGLLRLLEDLESPDPSSPR----LYLVDLDGFKAVND 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  ++  +          ARL G+ F ++ +      +I +    +    
Sbjct: 339 AWGHAVGDDLIRIVSNALMTSHPEVLAAARLGGDEFALVHVGSTAREEIEEA---ILALF 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  +  R I V ASIG A+     I+  E+L+ A++A+Y AK  G      +     R
Sbjct: 396 AEPFKIDGRTIEVGASIGAAARDGD-ISPLELLRRADMALYRAKANGKGQAVEYDPELDR 454

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++  L  A+ +  +  V+ P++      + GLEAL +W     GNIS   F+ 
Sbjct: 455 ERIRVAELEGLLKNAIGSGAIEAVFQPLVSASTGTVTGLEALARWKTAT-GNISPEIFIP 513

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+ + ML        SW      P + + +N++   L + E    +  ++ 
Sbjct: 514 LAERCGLIDALGVHMLRTSIGHAKSW------PGLTLSVNVSPIQLCNPEFAAQVITILQ 567

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  ++P+R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L    FD
Sbjct: 568 ELDFNPNRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFD 627

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++   E      ILR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 628 RMKIDRSLVSALDETANGADILRATISLATALQIPVTAEGIENTRQAAILRDAGCDQLQG 687

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+    I   L+E 
Sbjct: 688 YMLGKPMSACDISSRLQEE 706


>gi|186472442|ref|YP_001859784.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           phymatum STM815]
 gi|184194774|gb|ACC72738.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Burkholderia
           phymatum STM815]
          Length = 944

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 223/436 (51%), Gaps = 11/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +   +L   + D LTG+PNR    +RL     L  +      +V+ ID+D++K +N
Sbjct: 501 ELDAANARLLHENYHDALTGLPNRSHLYERLAAAW-LGYSSRGEPLSVLFIDLDRFKVVN 559

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +LV +  R+ + L+  D+LARL G+ F +++    +   +   A  +  +
Sbjct: 560 DSLGHLFGDALLVEVAGRLRDCLRRDDLLARLGGDEFAVVVPG-ASLQTVLTLAERILAA 618

Query: 641 IAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
              P N+ E+ +  + S+G  S   +     +++L++A+ AMY  K+RG +    F    
Sbjct: 619 FDTPFNIGEQTVFTSCSVGVVSADSAHHREPADLLRDADAAMYRVKNRGRDSFAVFNQQM 678

Query: 700 FRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            R     I+ +  L  A++   EL   + PI+ +   E+V LEALI+W  P     +   
Sbjct: 679 RRELSDQIETEGALRNALKRDGELVPYFQPIVDIASGELVALEALIRWQQPNGEVWAPGR 738

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E L +I  ++++ML R+A  +   R+  + PP+   +N++S  +   E  E +  
Sbjct: 739 FLPAVEGLKLIGRLDMYMLTRVAEILAQ-REHIDWPPVQ--VNLSSYSMTRPEFAEELLE 795

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +    PSR+ L  +E  ++  P+ +R  +  L   G+S+ LDDFGT  S LSY+   
Sbjct: 796 LLKRYGVHPSRVSLELTEGALVAEPDLARNTMQSLADNGMSVVLDDFGTGFSSLSYVHQY 855

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            F  +K + S +     + +  AI+R+I+ MA+++E T++A+ I  +  +  L  +G  +
Sbjct: 856 RFSGLKIDKSFVLELTQSARSRAIVRAIVRMAESLELTVVAEGIEDQATLDLLRTIGAAH 915

Query: 935 IQDSHVASPLGFNSIL 950
            Q  H+A P+   +++
Sbjct: 916 GQGYHLARPMSLEALM 931


>gi|56551297|ref|YP_162136.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56542871|gb|AAV89025.1| diguanylate cyclase/phosphodiesterase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 683

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 219/444 (49%), Gaps = 15/444 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T +K+  +   C    D+ TG+ NR+ F   L   ++    DD++  ++ +IDID +K+
Sbjct: 246 LTIEKEIEQQASC---YDSTTGLANRRQFFADL-QAVNSPYRDDSIPFSIGIIDIDGFKR 301

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G  +GD +L  +  R+   L+   ++ R+  + FG IL  +  S  +     ++ 
Sbjct: 302 INEIYGHDIGDFILDKIGHRLYLALRHKALVYRIGNDEFGFILPGDKESTILNQEIASIL 361

Query: 639 KSIAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGNHV---ES 694
           ++I+ PI+    +I ++ S G A S+  +  ++ ++ ++A+ A+Y+AK +GG        
Sbjct: 362 ETISHPISARNNQIVISCSAGCARSYFGTANSTQQIFEHADYALYYAKEQGGQGQIVVFD 421

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   +  +I+  L  A  + E ++ + PII   +  I+  E+L +WD P  G I+ 
Sbjct: 422 VNHELKLKELALIERALEKADFDKEFFIQFQPIIDSRNGGIITFESLARWDSPGLGRIAP 481

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AE+   I  +   + ++   +   W        I +  N+++ D+   +    +
Sbjct: 482 DKFIQVAEQTGAIIRLTPILFKKALNEAKKWPHS-----IKLSFNLSAHDISHEKQINLL 536

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ ++   P RI+   +E+ VM N   +   + +L+ +G S+ LDDFGT  S LS+L 
Sbjct: 537 LDILKQSNIDPERIEFELTETAVMHNFAAAFDNVKKLQAVGASIALDDFGTGYSSLSHLQ 596

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P + +K + S +T      +   I++SII + + I    +A+ +  +  +  L  +G 
Sbjct: 597 NFPLNKIKIDRSFVTNLEYNNRNYKIIKSIIILCREIGLDCVAEGVEDKEKVDLLAHLGV 656

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
             IQ  + +SPL   S    ++ R
Sbjct: 657 YLIQGYYYSSPLSAESAQVYIRNR 680


>gi|291524475|emb|CBK90062.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
          Length = 758

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/654 (18%), Positives = 250/654 (38%), Gaps = 47/654 (7%)

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
                I       ++++   ++I    + Y  A              I +  +       
Sbjct: 141 YRLHFIFTYAFVILIIFTYLYMIIKSSRMYREA-------YGAIAVVIFIGFSFDIATIG 193

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                 L   +   + +I + +    +                SL V    + +  +D  
Sbjct: 194 SDSIYDLTMIIYGAIAIIIYYLTYRYVPNELI-------ENMLSLVVRDMNNGIICYDRK 246

Query: 425 RDRVTTTPDIATIL--GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
              +     +  I   G            W+  +  + RD+                  E
Sbjct: 247 GRCIYYNDLMEAIYRHGGNMSVYESKYSQWIEKLGDDRRDSMTFQ----------TTDIE 296

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                 + + H+  I  + + + +  ++    + ND T+  +S E     A  D+LTG+ 
Sbjct: 297 I-----NGEKHYFEIAYKRIYDESNRVICDYFVYNDRTQMYESWEQEKYKASHDSLTGLL 351

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F + +  +++      +    ++  +I  +K IN++ G+  G+ VL+   + +   
Sbjct: 352 NRDQFYEDVHDMVNK---YHDTTFYLICSNIKDFKFINEIFGMEKGNQVLIKQAKLMASN 408

Query: 603 LKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                I ARL  +RF + L  E  +  ++AD    +++  +           +   +G  
Sbjct: 409 PSERTICARLMNDRFALCLPREEFDEKRVADSIKELQREFS------GNSFHLHTYMGVY 462

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
                    S M+  A +A    K+     V  +         ++  +  +   A++N E
Sbjct: 463 EIRDRDEAVSIMVDKANIAADTIKNNYDCCVAYYDEHLLEISIEQRRLLGEFEPALQNDE 522

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             +   P +   D    G EAL++W HP  G ++   F+ I E   +I  ++L++ E+ A
Sbjct: 523 FVMYLQPQV-KRDGAAKGAEALVRWVHPSRGILTPYAFIDILENAGLIYKLDLYIWEKAA 581

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           + +  W  +       I +NI++KD    ++ E    LI+K   + S + L  +E+ +M 
Sbjct: 582 QKLAEW-KEKGYGSYHISVNISTKDFYIIDIYETFTGLINKYGIAASNLHLEITETTLMT 640

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           + E++  ++ +L+ +G  + +DDFG+  S L+ L  I  D +K +   +  S  +     
Sbjct: 641 DFEKNMNIIHKLQGVGFRVEIDDFGSGYSSLNMLKDISADVLKIDMGFLRKSENEVKGQD 700

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IL SII +A  I   +I + +  +  +  LT MGC   Q  + + P+  +   +
Sbjct: 701 ILESIITLAGKIGMDVITEGVETKKQLDMLTMMGCHEFQGYYFSKPVPVSEFEE 754


>gi|166366588|ref|YP_001658861.1| putative diguanylate cyclase/phosphodiesterase [Microcystis
           aeruginosa NIES-843]
 gi|166088961|dbj|BAG03669.1| putative diguanylate cyclase/phosphodiesterase [Microcystis
           aeruginosa NIES-843]
          Length = 606

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 103/437 (23%), Positives = 218/437 (49%), Gaps = 6/437 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                +F D LT +PNR  F + L+  ++ +   + L   ++++D+++ + +N+ LG  +
Sbjct: 167 RTQGESFLDPLTNLPNRSIFNEYLSNAINNAQKSNQL-LGLLLVDVERLRNVNNRLGYRL 225

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  ++ R+ + L+  DI+AR  G+ F I+L   NN+  +   +  + K++     +
Sbjct: 226 GDKLLKIVSERLRKNLRSGDIVARWGGDEFIILLPQINNANDLEKVSQRIIKTLENNYEI 285

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
               + V  ++G             +L+  E  +   K+   N+     V+    +    
Sbjct: 286 ENHSLAVRLNLGSVICPPVGTDRKMILQKLEENLVAVKNNINNNSRIESVNVHPKNTRSS 345

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L  A+ N+EL L Y P + +   ++ GLE L++W HP++G I+ + F+ + +E  
Sbjct: 346 KVEYFLYQAIRNNELALYYQPQVNMTQGQVEGLEVLLRWLHPQFGLIAPNRFLPLIQESE 405

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +N ++L+   +    W+ Q  +    I IN++   L D +L   ++ ++++T   P
Sbjct: 406 LILELNRWVLKNACQQAQIWQ-QRGLLYTPISINLSPHQLRDPQLLTILKEVLTETQIGP 464

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +++  +E+ ++ N   +  +LG L+++GI +TLDDFG+  + ++YLG      +K   
Sbjct: 465 FFLEMEITETSLLENSRETVRILGDLQELGIGITLDDFGSGYASIAYLGQFSVKKLKIEQ 524

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL        +    + S++ +AK+    +IAK +  +  ++ L  +GC+ +Q + ++ P
Sbjct: 525 SLTKNLSNNPQDTRFISSLLAIAKSFNLIVIAKGVETQQQLEILQELGCERMQGNRISGP 584

Query: 944 LGFNSILKLLKERFPLV 960
           L    + K L     L 
Sbjct: 585 LAVEEMTKFLHIHRSLS 601


>gi|260774778|ref|ZP_05883681.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609340|gb|EEX35492.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 846

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 197/431 (45%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S   +      D+LT + +R+  ++    +         +   +++I I+K++ IND
Sbjct: 415 LKASFRALRSQLLYDSLTKLYSREGLIETCDAL-------PKMNGCLLLIGINKFRDIND 467

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +LV +  R+  L      LAR++G+ F        +  ++      +++  
Sbjct: 468 SLGHYKGDQLLVIIAERLRTLFDDDWYLARIAGDEFAFYFSQLPSDEQVTLAIHRIQQMF 527

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  + +  + V  SIG  + +      +  L+N  +A+ +AK             +  
Sbjct: 528 ASPFVMEQESVVVNVSIGVVTESEH-DNMTLWLRNGSIALSNAKQELTQVSYYKPEMADV 586

Query: 702 SDRVMIKED-LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           S +  + +  +  A+E+ E    Y PI+ L    ++G EAL +W  P  G IS  +F+ I
Sbjct: 587 SRKRTLMQAKIKDALEHQEFVPFYQPIVDLNTGAVIGAEALARWLSPSSGLISPLDFIPI 646

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I +I   +L +   D +   ++        + +N++   L   +L   +++++S
Sbjct: 647 AEESGLIGSIGEQILTQACNDTVKGMKEGKWDERFHLHVNLSVNQLSQPDLINSLRSVLS 706

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            +  +   + L  +ES ++ N       +  +R +GI + +DDFGT  S L+YL  +PFD
Sbjct: 707 SSGLNAGNLTLEITESRIVDNDPVIVKNMQAIRDLGIHIAIDDFGTGYSSLAYLHKLPFD 766

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +    ++    +I+ +II M + ++  ++A+ I      + LT + C   Q 
Sbjct: 767 CLKIDRTFVQKMEKENLDTSIVAAIINMTRGMKVDLVAEGIETSEQAQMLTSLNCPQGQG 826

Query: 938 SHVASPLGFNS 948
              + P+ F  
Sbjct: 827 FLFSRPVPFEE 837


>gi|28870086|ref|NP_792705.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853332|gb|AAO56400.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 656

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/435 (23%), Positives = 209/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L   +  +      +  V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANKDSLTGLPNRRQFFQTLDAAMSEALAL-RSKLAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+  +      ++RL G+ F +++  + ++  +      +   +  
Sbjct: 271 GHRTGDRLLMLVAERLNSVASNTVHVSRLGGDEFALVIKGDISNEALLALGKHLCDLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ +S   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSDMPIQIGATLGMATFPASADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 HTDGVTEQALRRANLETEFHVMFQPIIESCTCETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTHALQMALSWPA-----PIRLSFNLSAHDCATWESVSTIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAIAQFRQLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  L+
Sbjct: 626 YSPPISFAETLAWLE 640


>gi|304309733|ref|YP_003809331.1| predicted response regulator receiver [gamma proteobacterium HdN1]
 gi|301795466|emb|CBL43664.1| predicted response regulator receiver [gamma proteobacterium HdN1]
          Length = 600

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 107/433 (24%), Positives = 188/433 (43%), Gaps = 8/433 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I+E++ + E I   A  D LT +  R +F + LT++L   A D+  +  ++ +D+D++
Sbjct: 162 REISERRFAEERIQYLARHDYLTHLLTRTAFEETLTSLLSRIA-DEKAQHVLLYMDLDQF 220

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD++L  +   +   L+  DI ARL G+ F IIL +       A     
Sbjct: 221 KLVNDTSGHMAGDELLCQVAELLRRHLRAHDIAARLGGDDFAIILYNATPESGKATAEEI 280

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++    +         +V ASIG  S T      + +L  A+ A Y AK  G N V  + 
Sbjct: 281 IKAIGNLAFQHDGARHSVGASIGLVSITHEASGVASLLSMADTACYAAKEDGRNRVHVYD 340

Query: 697 VSSFRSDRVMIKEDL----CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            +  +      +  L      A+EN++  L    II L +      E LI+        I
Sbjct: 341 DNLKQMQSRQAEMQLTPRIFSALENNQFALHRQVIIPLSNGSAPHYEILIRMIGENNSII 400

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+  AE   +   I+ +++ER+ R      +          IN++   L       
Sbjct: 401 SPADFLGAAERFGVTPQIDRWVIERVFRHFAHHPELIEQMGG-CSINLSGLTLSIPRFEL 459

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ L+        +I    +E+  + N  R+   +  +RK+G S  LDDFG   S   Y
Sbjct: 460 FIEGLLKTYAVPAHKICFEITETSAVTNLHRTLEFMHAIRKLGCSFALDDFGRGVSSYYY 519

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K +G+ +          A+++SI  +   +    IA+ +       +L  +
Sbjct: 520 LKNLPVDYLKIDGAFVRSMQHDTVDYAMVKSINDVGHAMGKKTIAEYVENGHIEHQLRAL 579

Query: 931 GCDYIQDSHVASP 943
           G D+ Q  H+  P
Sbjct: 580 GVDFAQGYHLGRP 592


>gi|315178794|gb|ADT85708.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 840

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 202/458 (44%), Gaps = 13/458 (2%)

Query: 496 IIRIRPMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                P      +    +    ++    K S + +      D+LT + +R         I
Sbjct: 377 WNSAMPKPGKIYETSMMVYAFTEMANNLKASFKALREQLIYDSLTKVYSR-------EGI 429

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           +D  +    LR ++ +I IDK++ IND LG    D +LV + +R+  +      +AR+ G
Sbjct: 430 IDCCSQMPVLRGSLFLIGIDKFRDINDSLGHHQADQLLVLIAQRLKTVNNEETYIARIGG 489

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I         ++  FA  + +  A P ++    I V  SIG      S  + +  L
Sbjct: 490 DEFAIYRPHCVEEQQVKHFAQQLLQLFATPFHMPNENIAVNISIGIVH-HLSSASMTVWL 548

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +N  +A+ +AK            ++     R  +   + LA+EN E    Y PI+ L   
Sbjct: 549 RNGSIALSNAKQDSTRISYYVPEMADISRKRTQMVTHIKLALENREFVPFYQPIVDLHTG 608

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP- 792
           E++G EAL +W  P++G +   +F+ IAEE  +I AI   ML +   D +   +Q     
Sbjct: 609 EVLGAEALARWLSPEFGLVPPMDFIPIAEESGLINAIGEHMLRQACWDTVQGIEQGKWSA 668

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++   L   E    ++  +  T   P+ + L  +ES ++ N       +  ++
Sbjct: 669 DFQMHVNLSVNQLSHPEFLPQLRETLRDTGMQPNNLTLEITESRIVNNDPVILNTMQAIK 728

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIE 910
           ++GI L +DDFGT  S L+YL  +PFD +K + + ++         +I  +II +A + +
Sbjct: 729 QLGIRLAIDDFGTGYSSLAYLYKLPFDCLKIDRAFVSLLNPTHFETSIAATIITLANSFK 788

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             I+A+ I      + L ++ C   Q      P+ ++ 
Sbjct: 789 VNIVAEGIETPEQAELLAKLHCPQGQGFLFNKPMSYHE 826


>gi|262170320|ref|ZP_06037998.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261891396|gb|EEY37382.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 814

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 203/431 (47%), Gaps = 13/431 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  ++    +         L   +++I IDK++ IND
Sbjct: 384 LKASFKALRSQLVYDSLTQLLSREGLVESCNKL-------PQLNGGLILIGIDKFRDIND 436

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +L+++++R+      P ++AR+ G+ F I L   N   ++   A  + K  
Sbjct: 437 SLGHHQADQLLIAISQRLKLTFLAPALIARIGGDEFAIYLPDVNQHDELKGVAANILKLF 496

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSF 700
           A P ++    I V  SIG        +T    L+N  +A+ +AK         S  +++ 
Sbjct: 497 ASPFSMPSDNIAVNVSIGLVYLDEPNMTV--WLRNGSIALSNAKVDHAHISFYSPEMANA 554

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ +   + LA++N E    Y PI+ L   EI+G EAL +W  P++G IS  EF+ I
Sbjct: 555 SRKRMQMVTQIKLALDNREFVPFYQPIVDLHSGEILGAEALARWISPEFGLISPLEFIPI 614

Query: 761 AEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   +L +   D +    +        I +N++   L   +    +  ++ 
Sbjct: 615 AEESGLINAIGEQILRQACFDTVRGMSEHKWPATFHIHVNLSVNQLSHPDFIAQLHNILE 674

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++   P+ + L  +ES ++ +       +  L+K GI + +DDFGT  S L+YL  +PFD
Sbjct: 675 ESGLQPANLTLEITESRIVYSDPVILHNMLELKKAGIHIAIDDFGTGYSSLAYLHKLPFD 734

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++         +++ +I+ M +  +  ++A+ +  +  +  LT++ C   Q 
Sbjct: 735 CLKIDREFVSQLNTHNLENSVVAAIVNMTRGFKVELVAEGVETQEQVDLLTKLDCPRGQG 794

Query: 938 SHVASPLGFNS 948
              + P+ +  
Sbjct: 795 FLFSKPMAYQD 805


>gi|224825964|ref|ZP_03699067.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
 gi|224601601|gb|EEG07781.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
          Length = 803

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 212/457 (46%), Gaps = 11/457 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I   +G  +D+  Q+++   +L  A  D LTG+PNR     RL   L   A D   R T
Sbjct: 344 KIDLALGHLDDLERQRQAEARLLHQATHDPLTGLPNRTRLFHRLEQALQADAAD---RLT 400

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+++D+D +K IND+ G + GD +L  +  R+  L +  D++AR+ G+ F ++L    + 
Sbjct: 401 VLMLDLDGFKDINDLFGHSAGDTLLCRIAERLRALCRPADVVARMGGDEFVVLLEQLPDP 460

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               +    +  ++  P+ L + E++V+ SIG  + ++  +++  +L+ A++A+Y AK  
Sbjct: 461 HTARNAVEQIISAVRRPVPLPDGEVSVSTSIGMVTGSA-GVSADTLLRQADIALYRAKSL 519

Query: 688 GGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +    F     R  +        +  A++  EL L Y P + L    ++G EALI+W 
Sbjct: 520 GRDQYCLFDDELERQLKQQQTTRHAIRAALDGDELALYYQPKVDLQSGAVIGAEALIRWL 579

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                  +   F+   E   ++  I+ + +         W       P+ I +N+++  L
Sbjct: 580 V-DGEVRAPGRFLPALEGTELLGQIDSWAIRHAIAQAGHWHRHG--LPLQISVNVSAISL 636

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                   ++AL+++       ++L   ESV   + +     L   + IG+SL LDDFGT
Sbjct: 637 RRPAFFGELRALLAEAALPHQALQLEVLESVSQDSLQYIIDCLQACKDIGVSLALDDFGT 696

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L +L  I  D +K +   +       + IAI++S+   ++    T+IA+ +  E  
Sbjct: 697 GASSLLHLQRIQPDVIKIDQRFVRSMREQPENIAIIKSVSTFSQLSGRTVIAEGVETEAI 756

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            ++L  +G  + Q   +A P+        + +  P  
Sbjct: 757 GQDLLALGVRFGQGYAIARPMPAADFPVWVSQWRPPA 793


>gi|291527482|emb|CBK93068.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 758

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/654 (18%), Positives = 248/654 (37%), Gaps = 47/654 (7%)

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
                I       ++++   ++I    + Y  A              I +  +       
Sbjct: 141 YRLHFIFTYAFVILIIFTYLYMIIKSSRMYREA-------YGAIAVVIFIGFSFDIATIG 193

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                 L   +   + +I + +    +                SL V    + +  +D  
Sbjct: 194 SDSIYDLTMIIYGAIAIIIYYLTYRYVPNELI-------ENMLSLVVRDMNNGIICYDRK 246

Query: 425 RDRVTTTPDIATIL--GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
              +     +  I   G            W+  +  + RD+                  E
Sbjct: 247 GRCIYYNDLMEAIYRHGGNMSVYESKYSQWIEKLGDDRRDSMTFQ----------TTDIE 296

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
                 + + H+  I  + + + +  ++    + ND T+  +S E     A  D+LTG+ 
Sbjct: 297 I-----NGEKHYFEIAYKRIYDESNRVICDYFVYNDRTQMYESWEQEKYKASHDSLTGLL 351

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F + +  +++      +    ++  +I  +K IN++ G+  G+ VL+   + +   
Sbjct: 352 NRDQFYEDVHDMVNK---YHDTTFYLICSNIKDFKFINEIFGMEKGNQVLIKQAKLMASN 408

Query: 603 LKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                I ARL  +RF + L  E  +  ++AD    ++               +   +G  
Sbjct: 409 PSERTICARLMNDRFALCLPREEFDEKRVADSVKELQCEFT------GNSFHLHMYMGVY 462

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
                    S M+  A +A    K+     V  +         ++  +  +   A++N E
Sbjct: 463 EIRDRDEAVSIMVDKANIAADTIKNNYDCCVAYYDEHLLEISIEQRRLLGEFEPALQNDE 522

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             +   P +   D    G EAL++W HP  G ++   F+ I E   +I  ++L++ E+ A
Sbjct: 523 FVMYLQPQV-KRDGAAKGAEALVRWVHPSRGILTPYAFIDILENAGLIYKLDLYIWEKAA 581

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           + +  W  +       I +NI++KD    ++ E    LI+K   + S + L  +E+ +M 
Sbjct: 582 QKLAEW-KEKGYGSYHISVNISTKDFYIIDIYETFTGLINKYGIAASNLHLEITETTLMT 640

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           + E++  ++ +L+ +G  + +DDFG+  S L+ L  I  D +K +   +  S  +     
Sbjct: 641 DFEKNMNIIHKLQGVGFRVEIDDFGSGYSSLNMLKDISADVLKIDMGFLRKSENEVKGQD 700

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           IL SII +A  I   +I + +  +  +  LT MGC   Q  + + P+  +   +
Sbjct: 701 ILESIITLAGKIGMDVITEGVETKKQLDMLTMMGCHEFQGYYFSKPVPVSEFEE 754


>gi|254458560|ref|ZP_05071985.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084868|gb|EDZ62155.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 780

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/541 (20%), Positives = 218/541 (40%), Gaps = 33/541 (6%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+  D       + +  G     + G   N     H          +   +  +    Q 
Sbjct: 266 DLNGDITYVNDALCSATGYTRDELIGKPHNIFK--HKETPKEIYKEMWETIQNKN-IWQG 322

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
                  D    ++   I P+ ++NG+I+ YI    DITE  +  + +      D LT +
Sbjct: 323 NMINIKKDGSAFYITQTIIPVLDTNGEIVEYIASRYDITELVEKRKTLEKQYKTDRLTTL 382

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR   L+ + TI             + +IDID +K+IND  G  +GD V++ L++R+ E
Sbjct: 383 GNRFKLLNDIETI---------DSAALAIIDIDSFKEINDFYGHEIGDHVIIELSKRLLE 433

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIG 659
           L       + RL  ++F  +        K  +    +   +   PI   + EI +  +IG
Sbjct: 434 LTNDRFAEVYRLQADQFAFLCTECTTKDKFENTIKKLVDKLTNNPIYFQQHEILLRVTIG 493

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFRSDRVMIKEDLCLAVE 716
            A          ++  NA++A+  AK    N   + ++F +     + +   + +  A++
Sbjct: 494 IAF------EKKDLFINADIALKIAKQENKNSVTYEKTFNIEEQYKNNLEWTKKVKKALD 547

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
              +   + PI    +++I   EAL++        IS   F+ IA++  +   I + M++
Sbjct: 548 EDRIVAFFQPIYNQHNKKIEKFEALVRMIDTDDKVISPFFFLEIAKKAKLYSKITMIMID 607

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +      S   +         IN+   D+++ ++       I        +I +   ES 
Sbjct: 608 KAIEAAKSHDYEF-------SINLTIDDVVNKDVATYFLENIKTNNI-GHKIVIELVESE 659

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR- 895
            + N +     + + +++G  L +DDFGT  S   YL  +  D +K +GSL+    + + 
Sbjct: 660 GIENFDEFYSFIEQAKQLGCKLAIDDFGTGYSNFEYLLKLDVDYIKIDGSLVKDIDKDKN 719

Query: 896 -IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +  +II  AK      IA+ +  +     ++ +G DY Q  +   P+ ++ I K  +
Sbjct: 720 MRLVAENIISFAKIANMQTIAEFVSHKEIADIVSAIGVDYSQGYYFGEPVPYDEITKFTQ 779

Query: 955 E 955
            
Sbjct: 780 R 780


>gi|260770754|ref|ZP_05879683.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260613991|gb|EEX39181.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 840

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/431 (25%), Positives = 197/431 (45%), Gaps = 12/431 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R         I+D  +    LR ++ +I IDK++ IND
Sbjct: 404 LKASFKALREQLIYDSLTKVYSR-------EGIIDCCSQMPVLRGSLFLIGIDKFRDIND 456

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG    D +LV + +R+  +      +AR+ G+ F I         ++  FA  + +  
Sbjct: 457 SLGHHQADQLLVLIAQRLKTVNNEETYIARIGGDEFAIYRPHCVEEQQVKHFAQQLLQLF 516

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSF 700
           A P ++    I V  SIG      S  + +  L+N  +A+ +AK            ++  
Sbjct: 517 ATPFHMPNENIAVNISIGIVHHLPSA-SMTVWLRNGSIALSNAKQDSTRISYYVPEMADI 575

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  +   + LA+EN E    Y PI+ L   E++G EAL +W  P++G +   +F+ I
Sbjct: 576 SRKRTQMVTHIKLALENREFVPFYQPIVDLHSGEVLGAEALARWLSPEFGLVPPMDFIPI 635

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALIS 819
           AEE  +I AI   ML +   D +   +Q        + +N++   L   E    ++  + 
Sbjct: 636 AEESGLINAIGEHMLRQACWDTVQGIEQGKWSADFQMHVNLSVNQLSHPEFLPQLRETLR 695

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   P+ + L  +ES ++ N       +  ++++GI L +DDFGT  S L+YL  +PFD
Sbjct: 696 DTGMQPNNLTLEITESRIVNNDPVILNTMQAIKQLGIRLAIDDFGTGYSSLAYLYKLPFD 755

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + ++         +I  +II +A + +  I+A+ I      + L ++ C   Q 
Sbjct: 756 CLKIDRAFVSLLNPTHFETSIAATIITLANSFKVNIVAEGIETPEQAELLAKLHCPQGQG 815

Query: 938 SHVASPLGFNS 948
                P+ ++ 
Sbjct: 816 FLFNKPMSYHE 826


>gi|251772642|gb|EES53207.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum ferrodiazotrophum]
          Length = 706

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 203/437 (46%), Gaps = 8/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K   + +L +   D+LTG+ NR+  +  L   +  S +    +  V+++D+ ++K IN
Sbjct: 126 KRKDLEDQLLFSLHHDSLTGLFNRKFLIAELERTIRRSQSSGG-KFAVLLLDLSRFKSIN 184

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+ + R +  +L    ILAR+ G+ FG IL +     ++  FA  +R+ 
Sbjct: 185 DTYGHGVGDSLLIEVARILSGMLDPGMILARMGGDEFGFILPAPGEGDEVGRFARRIRQE 244

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +     +   EI +   IG + +    I++ +M++ A  A+  A  R       +  S  
Sbjct: 245 LCRVHTIDSIEIDLDLVIGISLFPDDGISAEDMVRKAARALDMAIDRHDYDYTLYNSSMD 304

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              R    +  +   A+   EL L + PII L    + G+EAL++W+HP  G +   EF+
Sbjct: 305 EVIRKRKALMSEFSRAIAEKELVLHFQPIINLRSRAVSGVEALVRWNHPDRGLLLPGEFL 364

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
                  ++ ++  ++LE     +  W  +     + I IN+    L   E    +  L+
Sbjct: 365 PEIAGTELLVSMGDWVLESALDHLSRWSARGLD--LPISINVDLLQLRREEFVPRLFDLL 422

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +        R+++   E+           +L R+ + G+ L +DDFGT  S LSYL  +P
Sbjct: 423 AAHPEVPAHRLEIEILETSTAEGFHEFPEVLRRIHERGVRLAIDDFGTGYSSLSYLKNLP 482

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K +   + G  + R   AI+ SI  +A+     ++A+ +     I  L ++GCD+ 
Sbjct: 483 VDTLKVDRGFVIGMLDNRENLAIIESIASLARIFGHGVVAEGMERPEFIPLLQKLGCDFA 542

Query: 936 QDSHVASPLGFNSILKL 952
           Q   +A P+     L  
Sbjct: 543 QGYAIARPMAEEVFLDW 559


>gi|237797299|ref|ZP_04585760.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331020149|gb|EGI00206.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 656

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 214/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  R+         ++RL G+ F +++  + ++  +  F   +   +  
Sbjct: 271 GHRIGDRLLMLVAERLSSAASDTVHVSRLGGDEFALVIKGDISNEALLMFGKHLCTLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F     +  
Sbjct: 331 SFELSEIPIQIGATLGFATFPATADNATQLFEYADYALYQGKNHNPGSTCLFSAGHRKQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 HTDGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  + + +L    +  +SW       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTVPLLTHALQRALSWPS-----PIKLSFNLSAHDCATWESVNKIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + R R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDINQVQQAIARFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPITFAETLVWIE 640


>gi|86751736|ref|YP_488232.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86574764|gb|ABD09321.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 608

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 136/552 (24%), Positives = 235/552 (42%), Gaps = 20/552 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D +     V G   +V   D   + +      A      +G                  +
Sbjct: 38  DFQLLKDIVRGLPSLVTVQDHQGEFLIVNDAAAARFNRPAGPGATATPCVA-------LE 90

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R    + +   RG +  E   RA D       +         G  L  +  + D+TEQ
Sbjct: 91  QRRADGLALLATGRGAICEE---RAGDGATARTFLTAHRPIEIGGRRL-LLSSSLDMTEQ 146

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   + +   A+ D LTG+PNR     R  T+L    T    R  +  +DID +K IND 
Sbjct: 147 KAIEDDLFRRAYFDELTGLPNRSVIEHRADTLLRAGGT--PSRFALAFLDIDNFKHINDY 204

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G AVGD +LV + +R+G  L+  D+L+R+SG+ F ++L    +  ++AD    + + + 
Sbjct: 205 YGHAVGDALLVGVAKRLGLELRETDMLSRISGDEFLLLLNPIESPAEVADHIDFLLQRLK 264

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            P  +   E+  +AS G + +     T   + +NA++AMY  K         F   +   
Sbjct: 265 APFYIDGSELFASASTGISLYPEHGHTFDALRQNADIAMYRVKIATKGAAAMFDVAMERE 324

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ I++ L  A+ +      + P + +   EI G+EAL++         +   F+ +
Sbjct: 325 ALERMRIEQSLRQAILDRRFCCAFQPKVDIRTREIKGIEALVRLRDDDGVIQAPGTFVDL 384

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A EL +I  +   +L  I + I    D        I IN+A+K   ++   +   A ++ 
Sbjct: 385 AVELGLIDELTHLVLAEIMKSIDLINDAFGTHA-SISINVAAKQAGNSHFMQSFAAALAA 443

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   PSR  +  +E   +        +L  LR+IG+ +++DDFG   S LS L  I  D 
Sbjct: 444 TEC-PSRFIIEVTEDAFVTKSHFQSEILPMLREIGVGISIDDFGIGYSSLSALADITADE 502

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQD 937
           +K + S +T      +   ILR+I  +++ +  T+IA+ I    ++  L  M    Y Q 
Sbjct: 503 IKIDRSFITDIHKRPRSQGILRAIESLSEALGMTVIAEGIETFEELAYLQTMTRIRYAQG 562

Query: 938 SHVASPLGFNSI 949
            + A P+    +
Sbjct: 563 YYFAKPVFLEEL 574


>gi|294678062|ref|YP_003578677.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476882|gb|ADE86270.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 918

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/614 (20%), Positives = 240/614 (39%), Gaps = 24/614 (3%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIV---ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
             +     + +   +    + +      L+   V   +         + +  +       
Sbjct: 293 FRMRHADGHWVWILSRGRAVEMAATGEALVLSGVHVDISRRKLLEAELIAKNDFLQRLTE 352

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSF 471
            S   +  +D     V    +   IL      + G     L +++   +           
Sbjct: 353 TSVSGILAFDPSGVIVFANMEAEQILDTTGAGLVGRCHAALGWLYGPREGTGAGRGFPFE 412

Query: 472 VGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK------ 523
              + G    + R+     D     + +   PM +  G  ++ +   +DIT++       
Sbjct: 413 RVAQGGETLNDLRLTLPRPDGTERVISVNAAPMESRGG-PVQVVCSVSDITQRLMDERRL 471

Query: 524 -KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            ++ E     A  D LTG+PNR+SF  ++      +    +L   V  + ID++++I D 
Sbjct: 472 AQAAEEASHAATHDALTGLPNRESFRAQVGPAQLRARPAGDLLQQV-FLSIDQFQQIKDR 530

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD V+  +  R+  L +   +LAR+    F  +      + +      A+ ++ A
Sbjct: 531 FGPQLGDRVICKVAERLEALREPDQLLARVGAEEFTFLSRG-RLAEEPEAATAALAQAFA 589

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSF 700
            P  +  + + ++AS+G + +     +  EM  NA+LAMY AK  GGN    F       
Sbjct: 590 EPFEIDGQPLYLSASMGMSLFPMDAHSPEEMWLNADLAMYEAKALGGNRAVPFTPKLRDR 649

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +   MI + L  A+ +    L   P I L     + G EAL++   P    I    FM 
Sbjct: 650 LAQEAMIGQSLQRAIRDGAFALYLQPKINLLDHGSLAGAEALVRCTDPALAGIGPDIFMP 709

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +++ I+L M++ +   + + R       + I IN++ + L      + + A ++
Sbjct: 710 IAEKTGLVRDIDLLMIDLVGAFVATLR--GRGQQLCISINLSPESLRRVRFGQAVLAHLA 767

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  +    +E  V+     +R  +  L   G  L+ DDFGT  S LSYL  +   
Sbjct: 768 AAGLGPEDVLFEITEGAVVDLNSDARESIEALLAAGFELSADDFGTGYSSLSYLQKLQLK 827

Query: 880 TVKFNGSLMTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            +K + S ++          AI+R+ + MA  +    +A+ I     +  L + GCD  Q
Sbjct: 828 ELKIDRSFVSRIALGDFASDAIVRATLAMAAALGLRTVAEGIDTPAQVVWLRQHGCDLGQ 887

Query: 937 DSHVASPLGFNSIL 950
             H A PL     +
Sbjct: 888 GYHFAKPLPAMDFM 901



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 28/289 (9%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNF 464
            +  + G     W  D+  +R+      A I+G     +  P+   +W   +H  D    
Sbjct: 215 LADVIAGGQVGTWRHDLRTNRLVINDRWAEIIGRKPEDLPVPLMIDDWRALVHPEDMVRL 274

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQK 523
            T        R      EFR+R AD  + W++ R R +   + G+ L   G+  DI+ +K
Sbjct: 275 NTAQAPKFRSRDYFFTEEFRMRHADGHWVWILSRGRAVEMAATGEALVLSGVHVDISRRK 334

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                ++  A  D          FL RLT          +    ++  +++  ++I D  
Sbjct: 335 LLEAELI--AKND----------FLQRLTETSVSGILAFDPSGVIVFANME-AEQILDT- 380

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI------AM 637
               G  ++      +G L    +      G  F  +         +            +
Sbjct: 381 ---TGAGLVGRCHAALGWLYGPREGTGAGRGFPFERVAQGGETLNDLRLTLPRPDGTERV 437

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               A P+      + V  S+  +  T   +    + + AE A + A H
Sbjct: 438 ISVNAAPMESRGGPVQVVCSV--SDITQRLMDERRLAQAAEEASHAATH 484



 Score = 72.7 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 93/321 (28%), Gaps = 46/321 (14%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A   +   + +      L             Q       + +  L  + +++  LA    
Sbjct: 16  AAYALVGVLYVLTSDRMLTAISADYQQYQSYQTFKGWAFIALTSLALWGILRGALARQET 75

Query: 397 S-QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT---TPDIATILGLASGSMHGPIRNW 452
           + + +    +R   A+  +G   W+  + R  V     +  +A  +G   G         
Sbjct: 76  AFEAVSQAEDRLRGALDAAGGCDWESFVDRHGVLWLRTSGILARRIGWREGEAVPTTE-L 134

Query: 453 LPYIHINDRDNFRTILDSFVG----YRRGRLQYEFRVRAADNQFHWMIIRI---RPMSNS 505
              IH +D ++F   +          R     +  R+R  D  + W+ +       + + 
Sbjct: 135 RALIHPDDMESFNAHMALHREIFAGGRVPIPPHVHRIRDRDGTYRWIKVVTDVDSALRDP 194

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA-----------FQDNLTGIPNRQSFLDRLTTI 554
            G +  +    +D        E I   A             D  T   NR    DR   I
Sbjct: 195 GGRLFGFALDVHD------QQEAIRGLADVIAGGQVGTWRHDLRT---NRLVINDRWAEI 245

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR----RIGELLKFPDILA 610
           +     D  +        ID ++ +     +   D V ++  +    R  +     +   
Sbjct: 246 IGRKPEDLPVPLM-----IDDWRAL-----VHPEDMVRLNTAQAPKFRSRDYFFTEEFRM 295

Query: 611 RLSGNRFGIILISENNSLKIA 631
           R +   +  IL         A
Sbjct: 296 RHADGHWVWILSRGRAVEMAA 316


>gi|77404754|ref|YP_345327.1| diguanylate cyclase/phosphodiesterase with phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
 gi|77390404|gb|ABA81586.1| diguanylate cyclase/phosphodiesterase with Phytochrome (GAF) sensor
           [Rhodobacter sphaeroides 2.4.1]
          Length = 931

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 207/430 (48%), Gaps = 19/430 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++   +      D LTG+ NR    +RL         D      ++ ID+D++K +ND 
Sbjct: 500 QRTRAELARLRHYDPLTGLANRSYLQERLAQ-------DGQPAAALLFIDLDRFKAVNDS 552

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G +VGD +L+ + R +   ++  D++ RL G+ F ++     ++  I   A  +R+++ 
Sbjct: 553 MGHSVGDGLLIEVARSLVATVRPHDLVVRLGGDEFVVLCHRL-DAAGIVSLAERLRQALE 611

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
            P  +  R+  ++ASIG A   S      ++++ A++AMY AK  GGN  E FR S    
Sbjct: 612 QPFEVAGRKCHISASIGIAMADSIGD--LDLVRAADIAMYAAKKNGGNRGELFRPSLYEE 669

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  V +  D+  A+E+ + +LVY PI       E +VG EAL++WDHP  G +    F+
Sbjct: 670 TTQLVELDNDMRGAIESEQFHLVYQPIFALSPEAERLVGFEALLRWDHPHHGALQPGIFI 729

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE L  I A+  ++L R    + ++R       + + +N++ + L   +    +  L+
Sbjct: 730 PLAERLGHIHAMGDWVLRRAILQLQAFRSAGPELDLKMNVNVSPRQLAKPDFPARLADLL 789

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++        + L  +E+ +    E     L  +R +G+ + +DDFGT  S L+ L  +P
Sbjct: 790 AQVPDLPRHALCLEITETSLSD--EAVSEALISIRALGVRIAIDDFGTGFSSLACLRRLP 847

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D  K + + + G  +  +      ++  +    +  ++ + I     +  +   G D+ 
Sbjct: 848 VDVAKLDRAFLGGGHTAAQDHRFFAAVTGLVHAADLKVVQEGIETLDQLALVRAAGADFA 907

Query: 936 QDSHVASPLG 945
           Q  H+A+PL 
Sbjct: 908 QGFHLAAPLS 917


>gi|209544807|ref|YP_002277036.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532484|gb|ACI52421.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Gluconacetobacter diazotrophicus PAl 5]
          Length = 877

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 220/453 (48%), Gaps = 22/453 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+++   I   A  D +TG+PNR    + L          +    T+M +D+++Y++I 
Sbjct: 411 EQERARAQIAHLAHYDAVTGLPNRTWLREHLA---ARQGAANWCGLTLMSVDVNRYREIR 467

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-------------- 626
           D LG A  D+VL  + +R+  ++   DIL R   + F I+    ++              
Sbjct: 468 DALGGAAADEVLGGIAKRLRAVVGQDDILVRTGEDEFSILTDCGHDGTEPECRDRSGMMA 527

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             + +  A A+ +++A P+ +    I    SIG  +      T   +L++ ++A+  A+ 
Sbjct: 528 VDRASTLAGAILRALASPVVVNGMPIGSPISIGICAGRDKGRTVETLLRHTQIAVSRARE 587

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GG+    F     R   DRVM+   L  A+ +  L LVY P +R     + G+EAL +W
Sbjct: 588 AGGSLYRFFSPEMNRWAQDRVMLASALGDALADGRLRLVYQPQVRSRSGALYGVEALARW 647

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P+WG+I  + F+ +AEE  +I+A+  + L +  R +  W       P+ + +N++++ 
Sbjct: 648 HDPEWGDIPPTRFIPMAEEAGLIEALGEWALRQACRQMAIWMAHGVGIPV-VSVNLSARH 706

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D  L   + +++ ++   P R+ +  +ES ++ + E +      +R +G+ L++DDFG
Sbjct: 707 FSDPGLPGLIGSILEESGIPPGRLMVEITESTMITDSETTIAAARAIRALGVGLSMDDFG 766

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+ L  +P   VK + + + G        +I+ +++ + +++  T++A+ +  + 
Sbjct: 767 TGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSIVNAVLRIGQSLGVTVVAEGVETQR 826

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  L  + C  +Q   ++ PL    +   L+E
Sbjct: 827 QLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEE 859



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 2/132 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             L          +     S  V  +G  V   D     V   P    +L      + G 
Sbjct: 113 AALRDVTDEVARRTAAHLFSTIVNHAGRGVMVLDDRDRIVYVNPAFTRLLDYRPEDVVGR 172

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             + +    ++DR            + R     +   R+   Q  WM     P+ +    
Sbjct: 173 DVSVILSPDVDDRAALGEFRRDL--HGRRTFGRDLHARSRSGQDIWMSTATSPVRDGGVL 230

Query: 509 ILRYIGIANDIT 520
               I I +D T
Sbjct: 231 DGGAIVILSDET 242



 Score = 41.1 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/126 (9%), Positives = 29/126 (23%), Gaps = 26/126 (20%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            +  +      V   D     +      A + G             L  +  +       
Sbjct: 12  LAGVLDAMPGGVVVTDADGRILFINRAAARLCGGQPEEWASRS---LAVLLPD------- 61

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP----------MSNSNGDILRYIGIA 516
                +         E R+   D    W+ + +            +       +R +   
Sbjct: 62  -----MDMTPDGTPREVRLAGRDGAALWLEVTLNRGGALPGVGLEVPEETPREIR-VAAL 115

Query: 517 NDITEQ 522
            D+T++
Sbjct: 116 RDVTDE 121


>gi|323492693|ref|ZP_08097837.1| GGEF/EAL/PAS/PAC-domain-containing protein [Vibrio brasiliensis LMG
           20546]
 gi|323313068|gb|EGA66188.1| GGEF/EAL/PAS/PAC-domain-containing protein [Vibrio brasiliensis LMG
           20546]
          Length = 829

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 231/549 (42%), Gaps = 26/549 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTIL 468
            V  S + V   D     ++T   +  I G +   + G   + L   +H     +F   +
Sbjct: 290 VVDLSSNGVLITDKHNRIISTNSKVEDITGYSFAELEGQSPSILSSSLHP---ASFYQKM 346

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK-SLE 527
            + + + +G    E   +      +   + I  + N  G+I  YI    D++E K    E
Sbjct: 347 WAEL-HEQGHWSGEVWNQTKFGAVYPEKLTIYVLRNRVGEIQNYIATFEDLSEIKSIESE 405

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                   D  TG+  R++F+  L               TV+++DI ++  IN++ G + 
Sbjct: 406 LNNYKNEHD-FTGLQTRENFIKALQE---------TDNQTVLILDIKRFSSINNMYGESF 455

Query: 588 GDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           G+ VLV +   +          + R   ++F +   S+++   +  F   +R  I   + 
Sbjct: 456 GNKVLVHVGHTLATNFDTKQINICRYGPDQFALSF-SQDSLEGVNKFVSFVRSQIETAVT 514

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           + + EI +  +IG ++ +    + +  +K A  A+  AK         +     +     
Sbjct: 515 IDDHEIDLLVNIGCSNMSE-FDSKTHPIKQAYYALRQAKSDPTPSTSIYSSQLEKRVARQ 573

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +   L  A++   + + Y PI+ L  E++V LEAL +W       IS  EF+ IAE+L
Sbjct: 574 YALGARLKKAIDEKRIDVFYQPILDLNSEKVVKLEALARWT-EDGEMISPFEFIPIAEKL 632

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE-GMQALISKTLY 823
             I  +   +LE+  +D+   +   +   I I IN +  +L + +     +  +I  +  
Sbjct: 633 GYIFQLGEIILEKSCQDLKKLKALGHD-NIAISINRSIDELSEEDQANCSILNIIRNSGL 691

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S   I +  +ES+ + +    + LL  LR  G+ + LDDFGT  +  S L     D +K 
Sbjct: 692 SEKDIIIEVTESIPLEDKPHVQELLRVLRSKGVKVALDDFGTGYASFSNLMKNSIDILKI 751

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      +    +++S+  +A  +   +IA+ +     +  L  +GC YIQ   ++
Sbjct: 752 DRSFVKDISTNQNNAVLIKSVNLLADQLGLDVIAEGVEDYQQLNLLQELGCRYIQGYLIS 811

Query: 942 SPLGFNSIL 950
            P  F+ I+
Sbjct: 812 KPQPFDDIV 820



 Score = 41.5 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 57/144 (39%), Gaps = 8/144 (5%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +  LIG T++Q  LA       + +  ER    +  SG   W WDI ++  + + ++A +
Sbjct: 141 LGFLIGKTILQQRLANQ--KDRLLAQFERSEQ-LTQSGS--WTWDISQNHFSYSKNLAKM 195

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G+           +  YI  + + +    +         +    +R   A N+   +  
Sbjct: 196 VGITENQQLHFADFFRSYIFKS-KISLDRFVSDVSSGDEAKTVTVYREMCAINKQFEISY 254

Query: 498 RIRPMSNSNGDILRYIGIANDITE 521
             +     +G++ + +G   + T+
Sbjct: 255 IKK--FTPSGELRKVVGNIRNTTD 276


>gi|330897423|gb|EGH28842.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 656

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L   +  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDAAMIEAVA-QRSELAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L+ +  R+         ++RL G+ F +++  + +S  +  F   +   +  
Sbjct: 271 GHRVGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDMDSDALLAFGKHLCDLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G++S + F+ IA
Sbjct: 391 HADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L R     +SW       P+ +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTRSLHMALSWPA-----PVRLSFNLSAHDCASLESVSRIVEIIKNS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + RK+G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFAETLVWIE 640


>gi|83645350|ref|YP_433785.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83633393|gb|ABC29360.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 559

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 194/440 (44%), Gaps = 11/440 (2%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
               D   +K++   +   A+ D+LT + NR+ F  RL + L+ S         ++ +D+
Sbjct: 124 ATVRD--ARKRAERTLHHMAYHDSLTDLVNRREFERRLKSALNSSKERGLTHM-LLYLDL 180

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K IND  G   GD++L  L   + + ++  D LARL G+ FGI+L S      I   
Sbjct: 181 DQFKIINDTCGHVAGDELLKQLAILLSKHIRESDTLARLGGDEFGILLESCAERRAIQLA 240

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                +         ++  T++ SIG  + TS   + +E+L +A++A Y AK +G N ++
Sbjct: 241 QELNSEVRNFRFVWQQKPFTISLSIGIVAVTSEYGSGAEILSHADIACYAAKDKGRNTIQ 300

Query: 694 SFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE-ALIQWDHPK 748
            ++        R   +     + +A+E +  +L   P+ R+  +   GL    +      
Sbjct: 301 VYQSDDVEMMRRRTEMQWISRIRIALEENRFFLYQQPMERIGPDRGAGLHTEFLLRLREG 360

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              I    F+  AE   ++  I+  ++E + + +            +  IN++   L D+
Sbjct: 361 DEVIPPGAFIPAAERYSLMPLIDRRVIELVFQYLAESGKGMADKGAY-FINLSGASLSDD 419

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           ++ E ++  + K    P RI    +E+  + +   +   +  +R+ G    LDDFG   S
Sbjct: 420 KVFEDIRKNLRKYKIRPERICFEITETAAIAHLAETVEFIREIREEGFKFALDDFGCGMS 479

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             SYL  IP D +K +GS +         + I+ +   +      T IA+ +  E   ++
Sbjct: 480 SFSYLKTIPVDYLKIDGSFVRNMLSDPIDVGIVEACNRIGHAAGLTTIAEFVENEQIKEK 539

Query: 927 LTRMGCDYIQDSHVASPLGF 946
           L  +G DY Q   V+ P   
Sbjct: 540 LIEIGVDYAQGFAVSKPKPL 559


>gi|218290364|ref|ZP_03494500.1| diguanylate cyclase/phosphodiesterase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239600|gb|EED06793.1| diguanylate cyclase/phosphodiesterase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 559

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 210/445 (47%), Gaps = 11/445 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y  +  D+ ++++  + +   +  D LTG+ NR  F+D     +  +  D + R  ++ +
Sbjct: 112 YRELFLDLRQKRELHKRLAHESSHDPLTGVLNRAYFMDYFEYAVRAAERDAD-RLALLYL 170

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+++ +N   G   GDDVL  + R      +  D+LARL G+ F +++      L + 
Sbjct: 171 DLDRFEALNATFGYRAGDDVLRRVARMWEAEKRSVDVLARLGGDEFAVLMAHAGPELDVL 230

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  S    +  L     + A +G A +     T   +L+ AELA+  AK RG + 
Sbjct: 231 AVANRLMASCRQ-VETLSNRFDLGACVGVAFFPEDGSTPDVLLRKAELAVQRAKRRGRHQ 289

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +R S          ++ +L  A+   E+Y+VY PI+      +V  EAL++W H +W
Sbjct: 290 VCFYRESLTAGMSRADRLRNELPRAISRGEMYVVYQPIVDAKTGRLVSAEALVRWRHREW 349

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDN 808
           G +S  EF++IAEE  ++ AI   ++E     + +WR       + + +NI+++D  L  
Sbjct: 350 GELSPGEFLVIAEEARLMPAITRRVMEEAVSSLATWRRSGF--SLTLSLNISAQDCQLYA 407

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + +   +++    P  +++  +E  +M +   +   +  L + G  + LDDFGT  +
Sbjct: 408 DLVDELSRAVAEHGVKPQDVEIELTEQSLMEHAAEAL--VRDLCERGFRIALDDFGTGYA 465

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL       +K + S +           ++R+++ +A+ +   + A+ +        
Sbjct: 466 SLAYLRRFQVSRIKIDRSFVAQLFTNVYDERLIRAVMALARELGLEVTAEGVETAEQEAF 525

Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951
           L  +G D +Q      P+  + + +
Sbjct: 526 LREVGVDRLQGFRYGRPVSASVLQE 550


>gi|15606404|ref|NP_213784.1| hypothetical protein aq_1151 [Aquifex aeolicus VF5]
 gi|2983622|gb|AAC07191.1| hypothetical protein aq_1151 [Aquifex aeolicus VF5]
          Length = 814

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 220/475 (46%), Gaps = 8/475 (1%)

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               + G     F++++ +  +  +             I+ ++   +   +   + E + 
Sbjct: 325 IKKGKMGEYSVCFKLKSKEKYYLTLSKEEEFYPAEVQLIINFLEELSTAIDAITAHEKLE 384

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
              F D LT +P R  F+  L+  L ++A  +  +  V+V+DID +  IN + G  VGD 
Sbjct: 385 KIEFFDKLTRLPTRIFFVKALSDRLSIAAQ-ERKKVVVVVLDIDNFTAINTLYGTEVGDK 443

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL+ +   + + ++  DILARL  + FG+ L   +  + +  F   + K  + P+ +  +
Sbjct: 444 VLIEVADSLRDSVRIGDILARLGADTFGVALTCADVPVAVNSFLARLNKLFSKPVIVNGK 503

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--K 708
           EI VT SIG + +      + ++L  A  AM+ AK  GGN V  +    F     +I  K
Sbjct: 504 EIQVTFSIGISVFPDDGNEAEKLLGYALQAMFEAKKLGGNRVVYYSSKEFPKIEEIITKK 563

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A++  E  L Y P I L +++IVG EALI+W       +   EF+ + EE  ++ 
Sbjct: 564 KELLEAIKKDEFILFYQPKIDLKEKKIVGCEALIRWKKGD-KLVPPYEFIPLLEETGLMN 622

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + L +LE+  R +  W  +     I I INI+       E  +     +         +
Sbjct: 623 EVGLIVLEKACRQLKEWHKKGIE--IEIAINISPAQFRSGEFLQSFLKDLEGYTELLYYL 680

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E+ ++ N   + L L  L ++GI + +DDFGT  S + +L  +P   +K +   +
Sbjct: 681 GVEVTETALVENVSVATLFLKSLSELGIRVYIDDFGTGYSSILHLKQLPVSALKIDVEFV 740

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                 E+   I++ +I +A ++    +A+ +  EI  K L  + CDY Q  + +
Sbjct: 741 KDMDVNERDYEIVKGVINLAHSLGLKTVAEGVEKEIHEKMLMELSCDYAQGYYYS 795


>gi|325262476|ref|ZP_08129213.1| putative sensory box/GGDEF domain/EAL domain protein [Clostridium
           sp. D5]
 gi|324032308|gb|EGB93586.1| putative sensory box/GGDEF domain/EAL domain protein [Clostridium
           sp. D5]
          Length = 573

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/437 (23%), Positives = 201/437 (45%), Gaps = 14/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    ++     D LTG+ +++ F   +  IL     + +    ++  DI+ +K INDV 
Sbjct: 129 RETAAMINLIQYDRLTGLYSKEFFYQMVKDILL---RNPDREYDIICSDIENFKLINDVF 185

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+  GD +L ++     +  +   I  RL+ +RF  ++    +               + 
Sbjct: 186 GVPTGDRLLCAVGDMYRQRAEGRGICGRLNSDRFACLIERCGDYTDEMFI------EASE 239

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +N       +    G  +   S I+  +M   A LA    K + G +   +        
Sbjct: 240 QVNEEANIKNIAMKWGVYTIVDSSISVEQMCDRALLAACSIKGQYGKYFAEYDDMLRNMM 299

Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             +  I + +  A++  +  + Y P  R+ DE++ G EAL++W HP+WG  S +EF+ + 
Sbjct: 300 LKKQAITDCMESALDQKQFQVYYQPKYRISDEKMAGAEALVRWKHPEWGMQSPAEFIPLF 359

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE   I  ++ F+ +++  D+  W D    P I + +N++  D+ + +L   ++  + K 
Sbjct: 360 EENGFITKLDQFVWDKVCSDMKEW-DAKGFPQIAVSVNVSRADIYNADLAGILKETVKKY 418

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               +R+ L  +ES    NP++   ++  LR IG  + +DDFG+  S L+ L  +P D +
Sbjct: 419 GLPAARLHLEITESAYTENPKQIIDMVSLLRDIGFVIEMDDFGSGYSSLNMLNEMPIDIL 478

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +   T       IL+ II +A+ +   ++A+ +     ++ L ++GCDY+Q  +
Sbjct: 479 KLDMKFIRSETAKPNSQGILQFIIDLARWMHLDVVAEGVETAEQLERLRQIGCDYVQGYY 538

Query: 940 VASPLGFNSILKLLKER 956
            A P+       LL+E 
Sbjct: 539 FARPMPCEEFKALLEEY 555


>gi|254500535|ref|ZP_05112686.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222436606|gb|EEE43285.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 719

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 197/431 (45%), Gaps = 7/431 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +   A+ D +T   NR  +   L   L+ +A DD  +  ++ +D   + KIND  
Sbjct: 268 ELQERLHKLAYVDPVTTGGNRTKYFADLADALERAALDDK-KTALIQLDFIGFAKINDTF 326

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+ VL+    R+  LL     ++R+S + F I+L  +  S   ADFA  +  ++++
Sbjct: 327 GQKAGNRVLMQTYTRLRRLLGESAKVSRISADDFCILLPLDERSDLAADFAAGIIDALSV 386

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
           P  L E EI V   IG A             + A +A+  AK         F   ++   
Sbjct: 387 PFQLDEGEIRVDPLIGIALLPQDAHDVETAHRVAGIALRAAKDAAHQQHMFFSAPLNDRV 446

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              ++++  L  A+   +L L Y P +   + +++GLEALI+W   +   I   +F+ +A
Sbjct: 447 QSEMLLETRLRTALATGQLELHYQPQVNPANGDLIGLEALIRWPDGQGNWIPPCDFISLA 506

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  F+L+   R    W          + +N++  +         ++ ++ + 
Sbjct: 507 EKTGLIIDLGHFVLDEACRQAAHWLTAGFEFG-HVSVNVSPIEFQQPNFASNVRKVLERY 565

Query: 822 LYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              P  + L  +E+V +   ER    LL  L+ +G+ L+LDDFG+  S LSYL  +PF  
Sbjct: 566 QLPPRTLCLEVTENVFVDTSERLVLDLLFELQTMGVLLSLDDFGSGYSSLSYLHKLPFQE 625

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +  +    ++  + ++I+ + K++   ++A+    E +      + CD +Q  
Sbjct: 626 LKIDRAFLQDADLYPQKKQLYQAIVGLGKSLGLRVVAEGAETEGEYLLTVGLECDSLQGY 685

Query: 939 HVASPLGFNSI 949
             A PL    I
Sbjct: 686 FCARPLPAKDI 696


>gi|330982328|gb|EGH80431.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 653

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 210/435 (48%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L   +  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFQTLDAAMIEAVA-QRSELAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+    R+         ++RL G+ F +++  + +S  +  F   +   +  
Sbjct: 271 GHRIGDRLLMLFAERLTSASSDKVHVSRLGGDEFALVIKGDMDSDALLAFGKHLCDLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V    ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G++S + F+ IA
Sbjct: 391 HVDGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L R     +SW       P+ +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTAPLLTRSLHMALSWPA-----PVRLSFNLSAHDCASLESVSRIVEIIKNS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + RK+G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHALALTKL 565

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTTLGCTMVQGYF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPISFAETLAWIE 640


>gi|329890623|ref|ZP_08268966.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328845924|gb|EGF95488.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 557

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/525 (24%), Positives = 230/525 (43%), Gaps = 33/525 (6%)

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LGL   +       +       DR     +L          +    R+R  +    W   
Sbjct: 45  LGLGPLAPQCSGAAFTALAMPQDRALADRLLKPQAEG--TEIAVRLRMRGCE-TCLW--- 98

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             R +   +G  LR  GI         +LE     A +D LTG+ +R++FL R+   L  
Sbjct: 99  --RGVWLEDG--LRAAGIV--------ALETKFAGADRDALTGLLDRRTFLVRVAETLAA 146

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +   +     ++V D+D+ +++N+ LG    D VL +L  R+          AR+  + F
Sbjct: 147 AGDYE-----MVVADLDRLRRLNEALGHERADLVLSALGSRLSAAFSEDCAPARIGEDEF 201

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT--SSKITSSEMLK 675
            +++    +    A  +  +R+++  P+ L   +I  T SIG  +         ++E+L+
Sbjct: 202 AVLVRRGGSG---ASGSERLREALEQPLRLAGFDIYPTLSIGAVTAEGGPDAPDAAELLR 258

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
             ELA+  AK  G     ++     +    R+ ++ DL  A    E+   + PI+ L   
Sbjct: 259 RVELAVEQAKQAGRGGAAAYGRALETDSLSRLALEADLRNAFVRGEIEPFFQPIVNLNSG 318

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMP 792
            + G EAL +W HP+ G +   EF+ +A+E+ ++  + L M+   AR +  W +      
Sbjct: 319 AVAGFEALARWRHPRRGLVPPDEFLTLADEMGLMNELGLLMMTEAARQLAEWLQRHPGAG 378

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            +F  +N++  ++    L E +  +I +       +KL  +E  +M +  R+  +L  LR
Sbjct: 379 RLFCSVNLSVGEIERAHLVEDVARIIKEAGLPRGALKLEVTEGDIMRDTARAAEVLKALR 438

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
           + G SL LDDFGT  S LSYL  +PFDT+K +   +    +      I++S++ + +++ 
Sbjct: 439 EAGASLALDDFGTGFSSLSYLAKLPFDTLKIDRYFVLTMDKDEGSAKIVKSVVNLGRDLA 498

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++A+ +      + L   GC Y Q    A  L        L E
Sbjct: 499 LEVVAEGVENASLAQLLLDDGCHYGQGFGYAPALPAQEAEVYLNE 543


>gi|190572609|ref|YP_001970454.1| putative transmembrane GGDEF EAL domain signalling protein
            [Stenotrophomonas maltophilia K279a]
 gi|190010531|emb|CAQ44140.1| putative transmembrane GGDEF EAL domain signalling protein
            [Stenotrophomonas maltophilia K279a]
          Length = 1053

 Score =  383 bits (983), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/657 (17%), Positives = 244/657 (37%), Gaps = 29/657 (4%)

Query: 308  ASIARITLASIVLYYTYFIIYHGMKGYERAVL---LIPAWILIFIWFIGLWMAITKRLDN 364
            + +AR               +  +   + A L      A+    +      + +      
Sbjct: 414  SPLAREIFGVQTDALPVADFFARVHRDDAARLQQAFDQAFAGGAVLDQVFRLVLPGGEVR 473

Query: 365  DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             +        +      +    +  +       + +     R  L    +    W +D  
Sbjct: 474  WVGARGQRVEVADSERRM-IGALTDLSERYQAREQMSEVERRFRLLFDRNPAPFWVFDPD 532

Query: 425  R-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                +          G +         + L        D  R  +               
Sbjct: 533  TLRFIEVNDAAVRQYGYSREEFL--AMSILDIRPREGWDEVRGAIQRA--QVGDPPDATV 588

Query: 484  RV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R+ R  D     +   +  + + +G     + +A D++E+      +   A  +  TG+ 
Sbjct: 589  RLHRRKDGSVFEVRAHLSKL-DFDGQPACLV-LAEDVSERLAYERDLAYQARHNPATGLL 646

Query: 543  NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            N ++  D+L               T+  + +   + + D LG  +GD VL S+  R+G L
Sbjct: 647  NVRALTDQLDE--------QGEGYTIAFVQLRGLQLVADTLGREIGDAVLQSMATRLGGL 698

Query: 603  LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                  LA      F   + SE+++ ++ D    + + ++ P+   +        IG A 
Sbjct: 699  GARCGTLAFQPAEDFVFAIGSEHDTQRVLD---DLLQIVSAPMRGKDSLHQFEPRIGVAV 755

Query: 663  W-TSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSEL 720
                   ++ +++  A  A + A+  G         V++  +DR+ +   +  A++N E 
Sbjct: 756  HVAGDGHSAEQVIGMAAQAAHAARAEGNVVVWFDAAVTTRLADRLRLAGRIHAAIDN-EF 814

Query: 721  YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
             L + PI    D     LEAL++W       I  +EF+ + E+  +I A+  +++   A+
Sbjct: 815  QLYFQPIRHASDGSPAALEALLRWPQADGSFIPPNEFIQLCEDTGLILALGRWVIRAAAK 874

Query: 781  DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                  +      + I +N+++    +++L         +   +   + +  +ES +M  
Sbjct: 875  AQRRLVEAGWGE-LPIAVNVSAVQFFNSDLVAEFTRAQQEFGLARGALHVELTESSLMRK 933

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            P ++   + RL + GIS++LDDFGT  S +SYL ++P D +K + S +    +  +  +I
Sbjct: 934  PGQAMQTMQRLHEQGISVSLDDFGTGYSSMSYLQHLPLDILKIDRSFVADVETNPRNASI 993

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             R+++ +  ++  TIIA+ +     +  L   GCD +Q   +  P     I+  L E
Sbjct: 994  CRALLSLGHSMGLTIIAEGVETPGQLDWLAAHGCDQVQGYLLGRPAPLERIIDALDE 1050



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 4/142 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +   +    ++ + +      LA        W  D     +  +P    I G+ + ++  
Sbjct: 371 RSTRSQQAMAEELKAGHAELRLAHQVGRVCTWYVDEDAALLRWSPLAREIFGVQTDAL-- 428

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           P+ ++   +H +D    +   D         L   FR+     +  W+  R + +  ++ 
Sbjct: 429 PVADFFARVHRDDAARLQQAFDQAFAG-GAVLDQVFRLVLPGGEVRWVGARGQRVEVADS 487

Query: 508 DILRYIGIANDITEQKKSLEGI 529
           +  R IG   D++E+ ++ E +
Sbjct: 488 E-RRMIGALTDLSERYQAREQM 508


>gi|238061142|ref|ZP_04605851.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237882953|gb|EEP71781.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 844

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/784 (17%), Positives = 285/784 (36%), Gaps = 38/784 (4%)

Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTI--FYMVNRSSMLIPTFAMAWV-VLGYIS 233
                  T+    L   +       L +  T+       R  +    FA          S
Sbjct: 69  RRQTLSATITEIPLVLALYYLPPLTLVLVATLAALIAQLRRRLGPAKFAFNVARSAAATS 128

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
           +    L  L  +       W        + +L+    +             +     + +
Sbjct: 129 LAGLVLLALPPIRGVGPGTWGILFAAVSTITLVTLAAVVGVITLLQGWQAGLEVVRTSTV 188

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
            +L         +   +A       +L      +   +     A  L     L  I+ + 
Sbjct: 189 PLLAAAVNATVGLIILLALKATYWSLLLLGALAVTVALVYRAYAQFLRQHRTLADIYELT 248

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVL 412
             M  + +   D   P  + G V  ++   +  +       +    + +  + R  L   
Sbjct: 249 RAMTRSGQ---DGTLPDALLGRVRALMQAEYATLWLPAQGRHPEVLLTARMDGRGLLDFS 305

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                V +  + + +      +   LG     +                     I+    
Sbjct: 306 KIPSAVRERVVRQRQTV---ALGARLGGDREQLAMLRAASTK----------DAIVVPLR 352

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILC 531
                    E   R +D             + ++  ++  +     +  E  + ++ +  
Sbjct: 353 SGEAVIGTLEVVNRLSDVGHF---------TPADVPVIETVAAHAAVALENSRLVDRLRH 403

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +A+ D LT +PNR+     L   +            V++ D+D  +++N+ LG A GD V
Sbjct: 404 DAYHDTLTKLPNRRRISAALDEAVK--IRAPGEVVAVLLFDVDGLRQVNESLGHAAGDQV 461

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +  R+        ++ R  G+ F + L  EN    +   A   R+ I   +      
Sbjct: 462 LAEVAVRLRASAPSSALVGRAGGDEFLVTLRLENAEAALELAARL-REEIRAEMVFDAFT 520

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKED 710
           + V  ++G A        ++ +L+  +LA   AK   G   + +  + S    R+ +  D
Sbjct: 521 LDVDTAVGVAVHPDHGSDAATLLQRVDLAAMAAKSMPGSIQLFNPALESRSLRRLGLAGD 580

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+++  L + + P + L D  +VG+E L +W+HP  G+++  +F+ +AE    +  +
Sbjct: 581 LRKALDDGALEVYFQPKVTLRDRRLVGVECLARWEHPAHGDVAPEDFVAVAEHTGQLGRL 640

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L    R    W       P+ + +N++++ L D    + ++ L+++    P R+  
Sbjct: 641 TEVVLREGLRRSRDWSHA--QQPLAVAVNLSARTLTDPHFPDRVRELLAEYDVPPQRLTF 698

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+ V+   +R    L RLR +G+ L++DDFGT  S L+YL  +P   VK + S + G
Sbjct: 699 EIREAGVLDGTDRPIPTLRRLRDLGVRLSVDDFGTGSSSLAYLRRLPVHEVKVDRSFVQG 758

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                  +AI+ +++ +++     ++A+ +  E+ ++ L  +GC+  Q    + PL +  
Sbjct: 759 MATDPGDLAIVNAVVTLSQQFGLAVVAEGVESELTLELLQDIGCEIGQGFLFSRPLPYER 818

Query: 949 ILKL 952
           +   
Sbjct: 819 LEAW 822


>gi|239997018|ref|ZP_04717542.1| putative diguanylate cyclase/phosphodiesterase domain 2 (EAL)
           [Alteromonas macleodii ATCC 27126]
          Length = 488

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/478 (23%), Positives = 208/478 (43%), Gaps = 8/478 (1%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D  R  +        + G       G     L  I    +     +   ++ Y      
Sbjct: 14  YDKHRKVIYWNKSSEDMYGFRECEALGQKLEDL-IIPSFMKSEVIKLHQRWIDYGEAIPS 72

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E  +     +   +      +         Y  +  D++EQ    + +   A  D LT 
Sbjct: 73  DELVLEKKSGEPIHVFSSHVMLKEGTDSPEMY-CVDIDLSEQHNIRQELERMASTDLLTE 131

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR+     LT+ ++ ++ +++    +  ID+D +K++ND LG   GD++L S+++R+ 
Sbjct: 132 LPNRRLLEQFLTSSIEDASRNESG-FALFFIDLDMFKEVNDTLGHTWGDELLRSVSKRLS 190

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           + L    +LAR  G+ F  +     +  + AD A  + +       L    + +T+SIG 
Sbjct: 191 DCLSEQGLLARFGGDEFVFVATQVTSENESADIAKKLTECFKQSFALSTENVHITSSIGI 250

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS 718
           + +        ++LKNA++AMY AK  G N    F    S     +  I   L  ++ N 
Sbjct: 251 SMFPKDGSEIDDLLKNADVAMYQAKAEGRNRFHFFTHALSQKVRQQRSIAAYLHESLVND 310

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWD-HPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
           E  L+Y P I L+  ++   EAL++W    +   +  + F+ IAE   +I  I  ++LE+
Sbjct: 311 EFELLYQPQIDLLTGKVASCEALLRWRPKDEDRAVPPNIFIPIAERSELIVHIGNWVLEK 370

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             +    W++Q     I + IN++ K+L  N   E ++    +    P  I L  +E+V+
Sbjct: 371 ACKQAQLWKEQGIN--IRVDINVSGKELEQNAYFERLRECRERHGLLPKDIGLELTENVL 428

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           + +       L   R  G+ +++DDFGT  S LSYL   P   +K + S + G+ E  
Sbjct: 429 IKSDNTILENLRVQRDQGVEISIDDFGTGYSSLSYLKQFPVSHLKIDRSFLRGAPENA 486


>gi|310780176|ref|YP_003968508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
 gi|309749499|gb|ADO84160.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
          Length = 761

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/620 (20%), Positives = 255/620 (41%), Gaps = 25/620 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
           F W +   +                  + L ++L    +   ++   +  +   +     
Sbjct: 151 FYWNVVASLKKEDLPKLYPDIFIFKKNIKLYILLGILALSATIITLLHLKKRESNQLYMA 210

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFR 465
            L +    + V   D   + +    +      L    +     +       H    D+ +
Sbjct: 211 ELILGYVDEAVLITDSAGNILDFNDEFLNFTDLDKDEILKSDTSLFELNVTHPEIYDDIK 270

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKK 524
             ++     +  +   E  ++  DN  +  I+ I  ++N        Y+ +  D+T +K+
Sbjct: 271 KEMN-----KGKKWAGELWLKKKDNSKYPAILTINNVANPKNKNTEHYVCVIKDLTSEKQ 325

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               I       + T +PN       +   +      +N   +++ I +   K  ND L 
Sbjct: 326 REAEIEYLLTHHSKTKLPNENLMRQLIDEEIK-----NNSGFSLIYIKL---KNYND-LE 376

Query: 585 IAVGDDVLVSLTR----RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           I   D+ L  +      +I  ++   + +A LS + F  I  +  N L +    I + K 
Sbjct: 377 IKYTDEFLNLIYENIIGKIESIVSEKENIAHLSTDTFIAICKTSTNKLLLNKSMIELFKG 436

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +   I + +  + +   +G   +     +S E+LK A  ++   K     +   +  +  
Sbjct: 437 LKSSITIKDISVHLEFEMGSVIFPEHGDSSRELLKKALFSIRALKFHPERNYIIYHNNIE 496

Query: 701 RSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +S R  ++ +  +  A+EN+E  + + P I    E I GLEALI+W++   GN+S  EF+
Sbjct: 497 KSVRRELEIEENIVSAIENNEFQVYFQPQIDSNTETINGLEALIRWNNTTLGNVSPMEFI 556

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I+++++E +AR +           I I IN+++ D  ++ L E + A++
Sbjct: 557 PLAEEKGIINKIDMWVVEEVAR-LTKKLGLHEQKGIKISINLSANDFKNDFLVEDVVAIL 615

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  ++ ++  +E  ++ + E     L   +  GI++ +DDFGT  S +SYL  + F
Sbjct: 616 DFHGLDHNQFEVELTEGTLISDHEYVSTKLEEFKSYGITVAIDDFGTGFSSMSYLKKLNF 675

Query: 879 DTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + S +    +    +I   I  +A+ ++  +IA+ +     +K L  +GC  IQ 
Sbjct: 676 DKLKIDRSFIKDYPKMDNGSIAEVISYLAQKLKVNLIAEGVETVEQLKYLQSIGCVNIQG 735

Query: 938 SHVASPLGFNSILKLLKERF 957
            + + PL    +   LKE F
Sbjct: 736 YYYSKPLSEKELKIYLKEHF 755


>gi|329897054|ref|ZP_08271826.1| hypothetical protein IMCC3088_2477 [gamma proteobacterium IMCC3088]
 gi|328921494|gb|EGG28880.1| hypothetical protein IMCC3088_2477 [gamma proteobacterium IMCC3088]
          Length = 646

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 203/439 (46%), Gaps = 9/439 (2%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLT-TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            +   A +DNLTG+ NR   L+     +L     +       +++ ++K+K+IN+++G  
Sbjct: 203 RLRDAASRDNLTGLYNRAYMLEAFEARLLTHGKNEAPSPGAFLLMGVNKFKEINEIIGNI 262

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             D+ L  L  +  +L+  P ++ R  G+ F   +    N  +I     +   +    I 
Sbjct: 263 GADECLKILALKFSKLVPPPSVVYRYDGDEFACWIEG-ANEQQIESIVQSFVAAANEAIT 321

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRV 705
           +      ++ S G A +    I S +++  A++A+  AK  R      + +       + 
Sbjct: 322 VKGWTFNLSLSAGIALFPRDAIDSKDIIHCADIALQDAKRSRQALLFYNPQYDENTQLKA 381

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +++  +  A+  ++  + + P I L    I G+EAL +W HP  GNI    F+ + E+  
Sbjct: 382 LLRNQVPGAIARADFSMFFQPKIDLATGAIAGVEALARWHHPTLGNIPPDVFIPLVEQGR 441

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I A +  ML    +   SW+ +     I I +N++  +LLDN+L E +Q  +     +P
Sbjct: 442 EINAFSRLMLHTAIQQAKSWQVEGKY--IPIAVNLSPYNLLDNQLVEFIQRELEAADLAP 499

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             + +  +ES  M +   ++ +   LR +GI +++DDFGT  S +SYL  +P D VK + 
Sbjct: 500 ELLAVELTESATMFDVNLAQRVFTELRDMGIKISIDDFGTGMSSMSYLQILPIDCVKLDR 559

Query: 886 SLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +      +   AI+  ++ +   +  T++A+ +  E   K L  +GCD  Q    A P
Sbjct: 560 SFIENIQTDKVAHAIVSCMVSLCHTLGKTVVAEGVETEAQSKALREIGCDQAQGYLFARP 619

Query: 944 LGFN--SILKLLKERFPLV 960
           L  N   ++   +   P +
Sbjct: 620 LRVNDKELIDWFRAEVPAI 638


>gi|304393235|ref|ZP_07375163.1| ggdef/eal/pas-domain-containing protein [Ahrensia sp. R2A130]
 gi|303294242|gb|EFL88614.1| ggdef/eal/pas-domain-containing protein [Ahrensia sp. R2A130]
          Length = 808

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 207/448 (46%), Gaps = 25/448 (5%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLD----RLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             +   + QD++TGI NR  F      ++   + LS         ++ +D+D +K+IND 
Sbjct: 349 RKLEELSVQDSVTGIGNRNYFQQAGTTQIGQRMALSKR-----GVLIFVDLDGFKEINDT 403

Query: 583 LGIAVGDDVLVSLTRRI------------GELLKFPDILARLSGNRFGIILISENNSLKI 630
            G AVGD  L +  + +              ++    I+ R+ G+ F I+L   +    +
Sbjct: 404 QGHAVGDAYLQAFAKGLYPATKRFMDREFRGVVGAHPIIGRIGGDEFAILLPIPDAIDDV 463

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +R  +   +++    I   +S G A++        ++L+ A++A+Y AK  G  
Sbjct: 464 RVLCERLRLELPNSVSVNGISIPCGSSSGGATYPEHGTAIEDLLRRADVALYLAKANGKG 523

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             E +        +  I   +  A+E+ +L L Y P   L    +  +EAL++W HP  G
Sbjct: 524 RFEIYNPKHALGGKSEILAAVKTAIEDDQLVLEYQPKYCLTKNRVTSVEALVRWKHPTLG 583

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I  + F+   ++   ++ +  +++ R  RD+ +         + + +NI ++       
Sbjct: 584 QIPPNMFLPAIQQTHAMENLGDWVVRRAIRDMQAMDASGFH--LNVAVNIGAEHFSAPSF 641

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++   +   ++PSR+++  +E V+  + E     +  +++ G ++ +DDFG   S L
Sbjct: 642 SKQLKKQCADAGFAPSRLQVEVTEDVMGASREAFSRTVQAVQEQGFTVAIDDFGKGFSNL 701

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L  IP D +K + SL++ +  + +   I+ S+I M+ ++ + +I + +  + ++   T
Sbjct: 702 SRLASIPVDVIKIDRSLVSEAVGSPRLHTIMASVISMSHSLGSAVIVEGVETQAEVAMAT 761

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
             G D +Q  H + PL   ++   L+E+
Sbjct: 762 AAGADGLQGYHFSRPLPLENLKAWLREQ 789


>gi|330968247|gb|EGH68507.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 493

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 208/426 (48%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L      ++ +  V +ID+DK+K IND  G A+GD  
Sbjct: 63  LARHDPLSGLLNRRVFNEQLVARL----QQESTQTAVFLIDLDKFKLINDTHGHAMGDAA 118

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + +        +ARL G+ F + +  + +  ++A  A  +   IAM  +    
Sbjct: 119 ICAVAESLRDATTGWQASVARLGGDEFSLAVSGDFSQFELAALAENVLAKIAMS-SAGLP 177

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            +T++A++G A        +  +L+ A+ AMY  K+ G      + VS  R  R+     
Sbjct: 178 RVTLSATLGVAISPLDGSDAEVLLQRADSAMYRGKNGGRATFHFYEVSFEREQRLQEVFV 237

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L  + + G E L +W H + G I   +F+ +AE+L +IK
Sbjct: 238 QELRHAIEEKHIQPFYQPIVSLPGQRLAGFELLARWLHSERGIILPMDFIPVAEQLGLIK 297

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  + ++ L S+  +  +R+
Sbjct: 298 QLTESLLLQAFDHARDWPS-----DFTLSINVTSLMIESLDFPDWLEQLASEGRFPLNRL 352

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 353 EVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 412

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S   +  ++++I+ + K++   I A+ +  E     L   GCD+ Q      PL F  
Sbjct: 413 DTSLNNQNEMVKAILALGKSLRMKITAEGVEHEDLADWLAAHGCDFAQGYLFGRPLPFAQ 472

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 473 VTALLA 478


>gi|330991138|ref|ZP_08315092.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329761959|gb|EGG78449.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 575

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/541 (22%), Positives = 234/541 (43%), Gaps = 10/541 (1%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            IV   D              I   +   + G     L     + +  FR +  +    +
Sbjct: 28  LIVAVTDRRGIITYVNDKFCQISQYSRQELLGHTHRILNS-GEHGKSFFRDMYRTLYAGK 86

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                     RA D   +W+   I P  ++ G+I  ++    +ITE   +   +   A  
Sbjct: 87  T--WHGNLCNRAKDGSHYWVATTIIPHHDARGEISGFVATRFEITELMNTKVRLKKQAAT 144

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR  F   L   ++ S   D     +++ D+D +K +ND+ G   GD+VL ++
Sbjct: 145 DMLTGLLNRGGFNASLVAAVEASKRRDPDPQVLVMFDLDGFKPVNDIHGHHAGDEVLKTI 204

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ EL+   D ++RL G+ F +IL        +      ++  +  PI L    + ++
Sbjct: 205 ATRLIELVGTQDAISRLGGDEFALILHKSLKITPLETILTKLQNLLEEPIMLESATVRIS 264

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
            SIG    T S+ T   + KNA++A+Y AK  GG     F  S  ++      I E+   
Sbjct: 265 GSIGATPIT-SEDTMEGLQKNADVAVYAAKQAGGKQARMFTPSLHKTTMERAKILEEARK 323

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            V   +  + Y PI+      I   EAL++W HP+ G +S+  F  +  +  + + +   
Sbjct: 324 GVVQKQFEVYYQPILNARTGRIEQAEALMRWHHPERGLLSAGAFTDVFADSALAQIMETH 383

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++    DI  W++    P + + +N++  DLL+ E    + + I +    PS   L  +
Sbjct: 384 LVQSFHDDIQKWKEAGL-PSLRLAVNLSHLDLLNLEQQIDLFSEIRQLNLDPSTFMLEVT 442

Query: 834 ESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           E ++     E+SRL L  L + G  L +D+FG     LS L  +P  ++K +  L+    
Sbjct: 443 EQMLQGRRAEKSRLRLRGLAEDGFGLAMDNFGYGTVRLSTLRELPLQSLKLDRCLVRNID 502

Query: 893 EKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                 ++L S+I +       +  + +  + +   + ++G DY+Q   ++  +  + ++
Sbjct: 503 TDDKARSLLASLIKLGHGYNLAVTVEGVETQEEFDTVRQLGVDYVQGFFISRAVSASELI 562

Query: 951 K 951
           +
Sbjct: 563 R 563


>gi|152966713|ref|YP_001362497.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151361230|gb|ABS04233.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 909

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 212/475 (44%), Gaps = 27/475 (5%)

Query: 501 PMSNSNGDILR--YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           P++ S G ++      + + I E+++    +   A  D LT +PNR      +   +  +
Sbjct: 424 PLAGSLGAVVHASITQMISAIHERERLQVSLAHQASHDALTELPNRAQASVLIERAVHRA 483

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +      ++ +D+D +K++ND LG A GD++L  ++ R+ E ++  D + RL G+ F 
Sbjct: 484 RRNGQ-HVGLLFVDLDHFKQVNDTLGHAAGDELLRVVSARMEETVRGGDAVCRLGGDEFV 542

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-------TSSKIT-- 669
           +++    +  ++ +    +  +I  P+ + +R   V ASIG A          +      
Sbjct: 543 VLVEPAEDHHQLVELGQRLITAICAPVRIGDRVARVGASIGVAVSGAGTHGTPAHGADTT 602

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           +  +L+ A+ A Y AK  G   VE F        S +   +E L  A+  +EL L Y P+
Sbjct: 603 AERLLQEADAAAYRAKAAGRGVVEVFDDELRHELSVQAQTEEALRQALLGNELVLHYQPV 662

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L+      +EAL++W+ P  G +    F+  AE   +I  +  + L      +  W  
Sbjct: 663 LDLLTGRTASVEALVRWNRPGHGLVPPDAFIPAAERSDLICDLGRWALAAALTQLTQWDA 722

Query: 788 ------------QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                       +  +  + + +NI+ + L    L + + A ++ +   P R+ L  +E+
Sbjct: 723 AATAGAAGAGGPEGELAGLGVAVNISGRHLASRYLLDDVAAALATSGIDPVRLTLEITET 782

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           V++ +   +   L  LR++G+ + +DDFGT  + +  L  +P D +K + S ++      
Sbjct: 783 VLV-DVPSALDQLRALRELGVKIAIDDFGTGYTSIGQLPNLPVDILKIDRSFVSSPGAGH 841

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             ++R +I  A + +  ++A+ I     +  L    CD  Q    A P     + 
Sbjct: 842 ADLVRLVISAAHSFDLGVVAEGIEENDQLHRLVADSCDSGQGFLFARPTAPAELT 896


>gi|325284838|ref|YP_004264300.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324316553|gb|ADY27665.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 787

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/438 (23%), Positives = 195/438 (44%), Gaps = 12/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +   E +   A  D+LTG+ NR +F  R    L            V++  I   + IN
Sbjct: 350 ELQTLQERLSYQASHDSLTGLLNRSAFWTRTQERLRQRLRA--ACSGVIMAHISHLRSIN 407

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G A GD +L  + +R    L+  D++ RLSG+ F I L + +   ++   A  + +S
Sbjct: 408 GARGHAAGDILLQEIAQRFRAELRPGDLVGRLSGDEFMIYLDNLSCPEQLEQEAQRLLRS 467

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +  P+      I    S+G A           + + A+LA+  AK +G N    F+  + 
Sbjct: 468 LVEPLVSGHLVIRPAISLGCAVAPPDGHDLGHLHQCADLALQQAKQQGNNGWVRFQPETG 527

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  ++EDL  A+E  E  L Y P   L +  +VG+EAL++W HP+ G IS +EF+
Sbjct: 528 AAELRRQQLREDLRHALERGECELHYQPQFSLPERRLVGVEALLRWRHPQLGTISPAEFI 587

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +  + L        +W        + + +N++ +     +    ++A +
Sbjct: 588 PLAEEGPLILELGAWALREACCQAQTWN--FGERKLLMSVNVSVRQFERPDFVPQVEAAL 645

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +        + L  +E+++    +        L ++G+ + +DDFGT  S +  L ++PF
Sbjct: 646 AACGLPGGCLILELTETLLHQEAQVGAQTFNELHRLGVHIAIDDFGTGYSNIQLLRHLPF 705

Query: 879 DTVKFNGSLMTGSTE------KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +K + S +    +           ++ ++ +A  +   ++A+ +  +     LT++GC
Sbjct: 706 RQLKIDRSFVQDLADGAAGLASAQHFMKVMLNLAHGLGINVVAEGVETQAQFDLLTQLGC 765

Query: 933 DYIQDSHVASPLGFNSIL 950
           D  Q   ++ PL    + 
Sbjct: 766 DKAQGFLLSPPLPAGELA 783


>gi|269964587|ref|ZP_06178826.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269830714|gb|EEZ84934.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 848

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/432 (22%), Positives = 201/432 (46%), Gaps = 13/432 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + S + +      D+LT + +RQ  ++                 ++ ++ I+K++ IND
Sbjct: 416 LRASFKALREQLVYDSLTRLYSRQGLIEICEN------QSHLCHGSLFLLGINKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD +LVS+  R+ +  +   +LAR+ G+ F + L + +   KI      +++  
Sbjct: 470 SVGHHNGDQLLVSIAERLKQQFRDNALLARIGGDEFAVFLSNVDTETKIKQTERRLQQLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           + P  +    + +  S+G      ++      L+NA +A+ +AK      V  +     S
Sbjct: 530 STPFMVEGENVVMKISLGIVQTQPNETMPL-WLRNASIALSYAKQDSLTGVCHYSPELAS 588

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +   +   +EN E    Y PI+ L+   + G EAL +W H   G +S  +F+ 
Sbjct: 589 ASKFRTQMLTKIQTGIENREFIPHYQPIVDLVSGTVCGAEALARW-HSDSGMVSPLDFIP 647

Query: 760 IAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           IAEE  MIKAI   +L +  RD   +   +       + +NI+   L      + + +++
Sbjct: 648 IAEESGMIKAIGQQILLQACRDTYQAIESKQWPSDFQLHVNISVNQLSCPSFVDTVTSVL 707

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    S + L  +ES ++ +   +   + +LR++GI + +DDFGT  S L YL  +PF
Sbjct: 708 DITKLPASNLTLEITESRIIDSAPTTLENMTKLREMGIGIAIDDFGTGYSSLGYLHSLPF 767

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC+ +Q
Sbjct: 768 TCLKIDRTFINQLTQENLNSSVVAAVINITAGLKTNVVAEGVEDSNQAQLLRSLGCNQVQ 827

Query: 937 DSHVASPLGFNS 948
             + + P+    
Sbjct: 828 GFYYSRPMPLEE 839


>gi|146295859|ref|YP_001179630.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409435|gb|ABP66439.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 613

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 204/434 (47%), Gaps = 11/434 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     +   AF D LTG+PN+ S +  L       +  D +   ++ +++   +K+N  
Sbjct: 181 RDYKSKLEFLAFYDELTGLPNKNSLIRWLN---LKVSQMDCIDTYLIFLEVRDLEKLNVT 237

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  + D++++ +++RI ++    +   ++  +RF II  S      I+DF   M   + 
Sbjct: 238 YGYDLVDELIIHISKRIKDIAGEGNKAFKIGFDRFAIICKS----ENISDFIERMLSQLL 293

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +P N+    I V  +IG A   +S   ++ +++  +LA+  AK  G N    F+ S    
Sbjct: 294 LPYNVNGNLIRVNFNIGAAQIENSNEAAANLMRRCDLALIKAKEEGLNEYVIFKPSIEIQ 353

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 ++ +L   +E +E  + Y P ++L +++I G EAL++W + K   +S  EF+ +
Sbjct: 354 TLKEGILERELRNGIELNEFIVFYQPFVKLENDKICGFEALLRWYYLKSVFVSPLEFIPV 413

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +   +L++  +       +       I INI+ K  +D    +    ++  
Sbjct: 414 AEKYGLIIDLGNMVLKQSLK-AGKILKKYYDDEFTISINISPKQFIDKRFVKNTIEILEN 472

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R++   +E V + N + +  ++   +K  ++  LDDFG + S L+YL  +P + 
Sbjct: 473 EKLQDIRLRFEITEKVAIENIDYTIRIMNEFKKYNVTFALDDFGVEYSSLNYLRKLPIEA 532

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           VK + S +          I+ +I+ + K +    + + +  +   + +  +GCDY Q   
Sbjct: 533 VKIDKSFVQDINDHDTYFIVETIVKLCKKLNLKTVIEGVETQRQYQIIKELGCDYAQGYF 592

Query: 940 VASPLGFNSILKLL 953
           +A PL  N ++ L+
Sbjct: 593 IAKPLPINELINLV 606


>gi|198284744|ref|YP_002221065.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198249265|gb|ACH84858.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 874

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/535 (21%), Positives = 229/535 (42%), Gaps = 21/535 (3%)

Query: 430 TTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRA 487
               + TILG  ++  + G    W    H    +   +  L+        R    +R   
Sbjct: 230 VNTRMLTILGASSADELIGHP-VWGIIHHEEVGEQVGQFALEVLSEGYATRRDVPYR--R 286

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D Q  +  I  + +  S+G + R +    D+TE+ + ++ +   +  D LTG+PNR++ 
Sbjct: 287 LDGQMVFTDISGQRLDGSDG-VQRILWTHVDVTERHRLMDELTQLSLSDPLTGLPNRRAL 345

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   +  +   ++L  +V++ID+D +K +ND  G   GD VL ++ +R+ + L+  D
Sbjct: 346 DTELGKAMARADRHEHL-LSVVMIDLDGFKPVNDTCGHEAGDMVLRTIGQRLRKGLRGTD 404

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWT-S 665
            +ARL G+ F ++L +     +I      + + I  PI L ++    +  S G   +   
Sbjct: 405 FVARLGGDEFVLLLENCTALEEIEVVMRKIGEMIRQPIELPDKSRAEIDLSAGICLYPFG 464

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
                  +L+ A+ A+Y +K+   + V  + +             +   +    L + Y 
Sbjct: 465 DSHNPDALLRYADQALYESKNHKADRVHYWTLFGDSVPVRQ--NVIQTRLREGGLLVHYQ 522

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA--EELCMIKAINLFMLERIARDII 783
           PI+     +IVG+EAL +        +  +EF+ +   E+      ++  +L +   D+ 
Sbjct: 523 PILDNRSHKIVGVEALARLRDKDGQILYPAEFLPLITVEDT---TYLSRMVLTQALADLA 579

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                     +++ +N+A +   D+     M  +I  +  +PSRI L   ES        
Sbjct: 580 EL--DTLGCSLWVSVNVAPESF-DDHFVPCMAGVIGASDIAPSRITLEILESSNFLEHNA 636

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
           +  +L  ++++G+ L LDD G+  S L  L  +P D +K +   +       + +  L S
Sbjct: 637 ALSVLHGVKELGVRLALDDVGSAYSSLLRLKDLPIDEIKLDQGFIRSLEDRPQDLYFLAS 696

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I  +A  +   ++ + +  +     ++ M    +Q   VA P+    + + L +R
Sbjct: 697 IRDLAIGLGVDLVVEGVETDDIADAVSVMDIKLLQGYGVARPMPMAQLREFLAQR 751


>gi|255306443|ref|ZP_05350614.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 965

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 190/430 (44%), Gaps = 17/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLS----ATDDNLRPTVMVIDIDKYKKINDVLGI 585
              A+ D LTG        D +      S    A ++     +  ID+DK+K IND+ G 
Sbjct: 539 RKIAYTDPLTG-------ADSIDKFKINSNKLFAKNNPEEYALFYIDVDKFKYINDMFGY 591

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +G+D L+ ++  I   LK  +I AR+S + F +++  + +   I      +   + +  
Sbjct: 592 DMGNDTLIHISNTIASELKEDEIFARVSADHFVLLIKYKTD-DDIKTRLNNIYNKVQILS 650

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-- 703
           N       +    G    + S    + ++  A  A    K    N    +     +    
Sbjct: 651 NPKINYYKLILDCGIYKISKSDNDINTIMDRANTARKTIKGGHKNSFAFYDKEMHKKILK 710

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  +  A+ N E  + + P   L D +I+G EAL++WD+P+ G I   EF+ + E 
Sbjct: 711 EKEIENSMVDALNNGEFIVYFQPKYSLSDYQIIGAEALVRWDNPQKGLIPPIEFIPVFER 770

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I+ ++ E + + I  W D+     + I +N++    +++   E  + ++ K   
Sbjct: 771 NGFIVNIDFYVFEEVCKKIREWMDE-GQKVVPISVNLSRMHFVNSNFIEKFKLIVDKYKI 829

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               I+L  +E+ V+ N E     +  L++ G  +++DDFGT  S L+ L  +P D +K 
Sbjct: 830 PTRLIELELTETAVLDNIEGLLDTMNNLKEKGFVISMDDFGTGYSSLNLLKELPVDILKL 889

Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + +       +     ++ ++I MAK ++  +I++ +     ++ L ++GCD +Q    +
Sbjct: 890 DRAFFTEKDESNNEKIVISNVIKMAKELKMKVISEGVETISQVEFLKQIGCDMVQGYLFS 949

Query: 942 SPLGFNSILK 951
            P+      K
Sbjct: 950 KPMPVKEFEK 959


>gi|297565340|ref|YP_003684312.1| diguanylate cyclase/phosphodiesterase [Meiothermus silvanus DSM
           9946]
 gi|296849789|gb|ADH62804.1| diguanylate cyclase/phosphodiesterase [Meiothermus silvanus DSM
           9946]
          Length = 638

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/598 (22%), Positives = 247/598 (41%), Gaps = 52/598 (8%)

Query: 389 HVLATGYFSQGIFSDG-ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++L+       +     E  +L + G G++     +       T      LG+       
Sbjct: 43  YLLSQRMAQDALQDSARETATLVMGGVGEVSAQDFLPGQETFRT--WQRRLGVKDRLGGV 100

Query: 448 PIRNWLP---YIHIND--------RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            +R W P    I+ +D                       +GRL+    VR A  Q     
Sbjct: 101 EVRVWSPQGVLIYPDDPRSAPEGGVAQALAGEAVSARASQGRLEVFVPVRVA-GQVVGAY 159

Query: 497 IRIRPMSNSNGDILRY--------IGIANDITEQ-----KKSLEGILCNAFQDNLTGIPN 543
              RP++     I R         +G+   +        + +   I   AF D LTG+P 
Sbjct: 160 QIYRPIAPLEERISRIQAWAWGSSLGVFVLLFLALSALLRGASREIQRTAFYDPLTGLPG 219

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           RQ   +     +  +     +   ++++D+D++++IND LG   GD +L  +  R+   L
Sbjct: 220 RQFLREIAEASMARAHR-VGMGMALVILDLDRFQEINDALGAPSGDLLLKKVGERLQADL 278

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--EITVTASIGFA 661
           +  D++ RL G+ F  +L+S+ N   +A+ A  +  S   P  L     ++ V AS+G A
Sbjct: 279 RAGDMVCRLGGDEFA-LLVSDVNVGGVAEVAKRILLSFGEPFELPGHRQKVYVQASLGVA 337

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
            +        E++  A++A+  AK    G             DR+ ++  L  A++  +L
Sbjct: 338 LYPEDGADLEELMHAADVALRRAKQEDSGFAFYRPDYDHHTQDRLALQAALHQALKEDDL 397

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y  I+ L    +   EAL++W       +    F+ +AEE  +I +++ F+L R   
Sbjct: 398 TLHYQSILDLQTGALDWAEALLRWYR-VGELVMPGAFIPLAEESGLIGSLDRFVLRRATL 456

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE------ 834
           + +          + I +N++ K L   E+ E ++  + ++   P+R+ L  +E      
Sbjct: 457 EAVRL-------GLQISVNLSPKSLHAPEVVEWVRQALEESGLEPARLCLEITEVALRGD 509

Query: 835 ---SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
              S +    E++   L  LR +G+ + LDDFG+  S LS L + P D +K   + + G 
Sbjct: 510 SGASTLQTEREQAIANLKALRALGVRIALDDFGSGYSWLSCLKHTPVDLLKMAPTFVAGI 569

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               +   +LRS+I +   +   ++AK +     +  L   GCD  Q   VA P+   
Sbjct: 570 GKDPRDEEMLRSLIALGHGLGLKVLAKGVETPEQLGWLREAGCDLAQGYGVARPVPLE 627


>gi|153002851|ref|YP_001368532.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367469|gb|ABS10469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS185]
          Length = 816

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/597 (20%), Positives = 249/597 (41%), Gaps = 21/597 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ Q         + +     R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQASLQQVHERLSRAVKQLNDSELRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   + G  + W   +H +DRD     L  +V  +    +   R+R  +  + W++ 
Sbjct: 288 IGYAPDELAGVFQTWETRLHPDDRDIVLDALQEYVSGKSKEFESVHRLRHREGHYVWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G   R IGI  D++E  K+   I     Q ++TG   +P   +F+ RL+ 
Sbjct: 348 RGMLVDWDPQGRPTRMIGIHMDVSESAKNHAAINELVDQ-SVTGRKMLP--DAFMARLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L            ++++++D+   +  +    + + +L  +  R+         + RL 
Sbjct: 405 FLTQ-GNSSGQWGALLLVEVDRLGLVATLNSHEL-ERLLTQVAARLSSYFTENITVGRLE 462

Query: 614 GNRFGIILISENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              F ++         +A          +R+ IA P +       ++A++G     S + 
Sbjct: 463 SGDFVLLAKDLAIDASVAARRALALASELRQVIARPFHYGHHHFELSANVGICLLDSIET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYH 725
              + +++ AELA   AK  G      +             ++++L  A++   + L++ 
Sbjct: 523 LDPALVMRRAELATLSAKRPGQAGCAFYHAEMDLRQSRDEQLQQELQTALQQDSMTLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++     E+V  E L +W       I  +EF+ +AE+  MI  ++L++ +R+ + I + 
Sbjct: 583 PVMNAHS-ELVSAEVLTRWYRADGEFIPPAEFVALAEQGGMIAELDLWVAKRVCQFIQTS 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q    P  + +NI++      +  + + AL+ +      ++ +  +E+ ++  P+   
Sbjct: 642 HAQGRSLP-TLTLNISAFSFGQADFVDALVALVKEHGIVAHQLGIELNEAALLMQPQFVA 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
             + +L   GI + LD FG+  S LS L   P   VK + S +          ++++I  
Sbjct: 701 ERVSKLVDAGIGIVLDHFGSGSSALSCLANQPLVAVKLDMSCIDSLAAMPQR-VKALIVS 759

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+     ++AK +      +     GCD  Q    +  L     ++L+  R PL+++
Sbjct: 760 AQQFNLHVVAKGVESPQHYQAFVEFGCDGYQGYLFSRALNQADFIQLVCPR-PLLRS 815


>gi|145224063|ref|YP_001134741.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
 gi|145216549|gb|ABP45953.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
          Length = 782

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/464 (23%), Positives = 207/464 (44%), Gaps = 37/464 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ L+     + +D LTG+ N   F DRL   + L A   +    V+ +D+D +  +N
Sbjct: 316 ENRQWLKAAAERSLRDPLTGLANGTLFHDRLRHAMMLHAR-GDRSVMVVSLDLDDFAFVN 374

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG    D +LV   RRI   ++  D + R++G+ F ++L    +          +  +
Sbjct: 375 DNLGHPAADRLLVHAGRRIAACVRPGDTVGRVAGDEFALLLEG--DVHDSQRVLQRVVAT 432

Query: 641 IAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              P ++    +T+  S+G A       ++T   ML+ A++A+  AK      V  F   
Sbjct: 433 FDEPFDVDGEPVTIRCSVGVAVAFADEPEVTPETMLRRADIAVRVAKRSHFPRVRFFEDD 492

Query: 699 SFRSDR----------------------------VMIKEDLCLAVENSELYLVYHPIIRL 730
                                             V +  +L  AV+  +L L Y P + L
Sbjct: 493 IEDDFDDDMATTDSDAAQGGDRSTDRVALTGAAKVRLLSELRRAVDQGDLELAYQPKVDL 552

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
           +  ++VG+EAL++W HP+ G +    FM +  E  +I+ +   +++++  D   W     
Sbjct: 553 VSGQVVGVEALLRWPHPELGLLYPGTFMPLVREHKLIRPVTDLVIDKVLDDAARW--VGT 610

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             PI + +N+ +  L+D  L   ++A + +       + +  +E +V+ + ER   +LG+
Sbjct: 611 GAPIPVAVNLFAPSLIDARLPATLRAALERRGLPAELLTVEITEDLVINDLERVTAVLGQ 670

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKN 908
           LR  GI +++DDFG+  S LSYL  +  D +K + S +    +  +   ++R+II +   
Sbjct: 671 LRDHGIRVSIDDFGSGYSALSYLRDLLIDEIKLDRSFIAAVTTDPRAAVVVRAIIELTHG 730

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  T++A+ I        L   GCD  Q  +   P+    +  L
Sbjct: 731 LGMTVVAEGIEEAATANWLRDSGCDIGQGFYFGKPVDPADVPSL 774


>gi|162149573|ref|YP_001604034.1| GGDEF family signaling protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161788150|emb|CAP57755.1| putative signalling protein, GGDEF family [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 855

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 220/453 (48%), Gaps = 22/453 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ+++   I   A  D +TG+PNR    + L          +    T+M +D+++Y++I 
Sbjct: 389 EQERARAQIAHLAHYDAVTGLPNRTWLREHLA---ARQGAANWCGLTLMSVDVNRYREIR 445

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-------------- 626
           D LG A  D+VL  + +R+  ++   DIL R   + F I+    ++              
Sbjct: 446 DALGGAAADEVLGGMAKRLRAVVGQDDILVRTGEDEFSILTDCGHDGTEPECRDRSGMMA 505

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             + +  A A+ +++A P+ +    I    SIG  +      T   +L++ ++A+  A+ 
Sbjct: 506 VDRASTLAGAILRALASPVVVNGMPIGSPISIGICAGRDKGRTVETLLRHTQIAVSRARE 565

Query: 687 RGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            GG+    F     R   DRVM+   L  A+ +  L LVY P +R     + G+EAL +W
Sbjct: 566 AGGSLYRFFSPEMNRWAQDRVMLASALGDALADGRLRLVYQPQVRSRSGALYGVEALARW 625

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P+WG+I  + F+ +AEE  +I+A+  + L +  R +  W       P+ + +N++++ 
Sbjct: 626 HDPEWGDIPPTRFIPMAEEAGLIEALGEWALRQACRQMAIWMAHGVGIPV-VSVNLSARH 684

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D  L   + +++ ++   P R+ +  +ES ++ + E +      +R +G+ L++DDFG
Sbjct: 685 FSDPGLPGLIGSILEESGIPPGRLMVEITESTMITDSETTIAAARAIRALGVGLSMDDFG 744

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+ L  +P   VK + + + G        +I+ +++ + +++  T++A+ +  + 
Sbjct: 745 TGFSSLANLVSLPLSEVKIDRAFVVGLERAGDTYSIVNAVLRIGQSLGVTVVAEGVETQR 804

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  L  + C  +Q   ++ PL    +   L+E
Sbjct: 805 QLDLLDGLDCPVVQGFLMSRPLDAGKVPSWLEE 837



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 2/132 (1%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
             L          +     S  V  +G  V   D     V   P    +L      + G 
Sbjct: 91  AALRDVTDEVARRTAAHLFSTIVNHAGRGVMVLDDRDRIVYVNPAFTRLLDYRPEDVVGR 150

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             + +    ++DR            + R     +   R+   Q  WM     P+ +    
Sbjct: 151 DVSVILSPDVDDRAALGEFRRDL--HGRRTFGRDLHARSRSGQDIWMSTATSPVRDGGVL 208

Query: 509 ILRYIGIANDIT 520
               I I +D T
Sbjct: 209 DGGAIVILSDET 220


>gi|145593485|ref|YP_001157782.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145302822|gb|ABP53404.1| diguanylate cyclase/phosphodiesterase [Salinispora tropica CNB-440]
          Length = 841

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/779 (19%), Positives = 292/779 (37%), Gaps = 41/779 (5%)

Query: 200 SLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEI 259
             +A+F        +        ++ W     I       +  +             +  
Sbjct: 59  LAVAVFAFAQLARLQFRAAAGAVSLTWGEAALIICLHQVPAPWIP------------AAT 106

Query: 260 ALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV 319
            L   L       L  +R   +V  I  S     A+   ++        +     LA  +
Sbjct: 107 LLGVGLAWSGMSLLGTHRPPLEVARIASSLTVATALAGFVTTLLGRPLLAAPTPPLALAM 166

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
           +      +          + L     +  +    L   +   + N ++   +V  + +  
Sbjct: 167 VAGAVTYLLVSAGLGAVTLNLYHRVPIGALLGEALGGKLMTFVGNVVVGLVVVALIEVDP 226

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             +    +   L    +   + +D ER++  A   +   +   D             T+ 
Sbjct: 227 RWLLILPLPLWLLQQTYRHRLRADRERRAWRAFAEATAALNHHDERGMATAAVSGALTLF 286

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDS----FVGYRRGRLQYEFRVRAAD-NQFH 493
                ++     +   + +  D        +S            L     V  A+     
Sbjct: 287 QAELVTVEVAGGDGRRHRYRGDAAGQLFTWESGGPDVTDGDERDLVRPLTVGTAEVGHLR 346

Query: 494 WMIIRIRPMSNSNGDI--------LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
               R  P ++ + D+           +  A    E +K     L  A  D LTG+ NR 
Sbjct: 347 VRFPRAAPPTDRDRDVFAAYGDALAAALHDAASHRELRKVAACSLQEAVSDALTGLANRT 406

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           + L +   +L   A D      ++++DI+++K++ND LG A GD +L     R+G L + 
Sbjct: 407 AMLSKGDQVLRRLARDR--PVALLLLDINRFKEVNDTLGHAAGDQLLRLTADRLGGLARG 464

Query: 606 PDILARLSGNRFGIILISENNSLKIAD-------FAIAMRKSIAMPINLLEREITVTASI 658
            D+L RL G+ F ++L S       A         A  + + +A P  +    ++V A++
Sbjct: 465 GDLLGRLGGDEFALLLTSVPVLGDGAAPMAYTLRQAREITERLAAPTEVAGVRMSVEAAV 524

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA-VE 716
           G     +     +E+L+ A++AMY AK   G          +  +DR+ +  +L  A   
Sbjct: 525 GVVVAGAGSADMAELLRRADIAMYQAKEGSGSVAAYDSARDAASTDRLALLAELREALAA 584

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + +L LV  P + L      G+EALI+W HP+ G ++  EF+   E    +     ++L+
Sbjct: 585 DDQLVLVLQPAVDLATGAPTGVEALIRWRHPRRGWLNPHEFIRPVENSEQLGTFTRYVLD 644

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +       W        + I +N++++ LL+  L   +   + +      R+ L  +E+V
Sbjct: 645 KALGVAAQWARDGLD--LPISVNLSARSLLNPRLPTEIADALRRHRVPARRLVLEITETV 702

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
           VM   E    +LG LR +G+ L +DDFGT  S L++L  +  D +K + S +     + +
Sbjct: 703 VMSELEVIDEVLGALRTMGVQLAVDDFGTGFSSLTFLTRVTVDELKVDRSFVIRMADSPE 762

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             AI+RS + + + +   ++A+ +        L  +GC   Q  H   P+  + I  +L
Sbjct: 763 AAAIVRSTVGLGQQLGLRVVAEGVETAEQRSALAELGCTAAQGYHFFKPMPADKIGAVL 821


>gi|218708589|ref|YP_002416210.1| biofilm architecture maintenance protein mbaA precursor [Vibrio
           splendidus LGP32]
 gi|218321608|emb|CAV17560.1| Biofilm architecture maintenance protein mbaA precursor [Vibrio
           splendidus LGP32]
          Length = 792

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/448 (23%), Positives = 188/448 (41%), Gaps = 16/448 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   + +     A  D LT I NR  F   +   L  S    N    V+  D+D +K +N
Sbjct: 327 ELDDTYQQTKLLAENDQLTQIANRHQFQTFVQQSL--SKPSSNTETWVLYFDLDNFKFVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENNSLKIA-D 632
           D  G  +GD +LVS  +RI  +            + ARLSG+ F + L + N+   IA  
Sbjct: 385 DKYGHQIGDSILVSFAQRISNICNHYKTELNAHCLPARLSGDEFVVYLNAPNHQENIAHR 444

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           F+  +   +            +T SIG A+  +   T  ++L NA+ AMY AK  G N  
Sbjct: 445 FSNDLLTPLQKGFVTESGNFPITVSIGIATHPNDGDTIEKLLSNADTAMYQAKRAGKNQF 504

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             + +   ++ +    I+  L     + E  LVY P +      I+G+E L++W     G
Sbjct: 505 ADYSLDLDKTIQRQASIESALRENNFDEEFKLVYMPYMDSTGSYIIGVEVLLRWHSKHLG 564

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE+  + + I+ ++++         + Q     I + IN++S  +    L
Sbjct: 565 LVPPDEFIPIAEQTGLFEIIDRWVIQNAFASFHQLQAQF-DHSIQLSINLSSAGIKTTHL 623

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++         P+ I    +E+    N +    LL +L  +G  L +DDFG+  + +
Sbjct: 624 ADFIKEHAKINQIPPNLIDFEITET-FYSNSQGF-PLLNQLSYMGYRLAIDDFGSGYTSI 681

Query: 871 SYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           + L   P   +K + + +          I++ II +       + A+ I  +   + L  
Sbjct: 682 TQLVQYPTQKIKLDKTFLDTLIETDNQNIVKPIIGLCHAQGKKVTAEGIETQCMHQWLQD 741

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
             CD +Q  +   P+    + +  ++  
Sbjct: 742 AQCDMLQGYYFGKPMPLEELTEWYRQHQ 769


>gi|149908915|ref|ZP_01897574.1| sensory box/GGDEF family protein [Moritella sp. PE36]
 gi|149807926|gb|EDM67869.1| sensory box/GGDEF family protein [Moritella sp. PE36]
          Length = 848

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 194/424 (45%), Gaps = 11/424 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                 D+LTG+ +R  F+++L                ++++ +  ++  N+ LG    D
Sbjct: 416 RQQLLFDSLTGLLSRDGFIEQLNH------PTTQQHGILVLLGLRSFRHTNNSLGQHKSD 469

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +LV++  R+ + +    +++R+  + F I      +     DFA  +      P  +  
Sbjct: 470 QLLVAIAARLKQSITDRVVISRIDKDTFAIFTPDFKDLEHSNDFAETLLAYFNRPFLING 529

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMI 707
            E+ V+ + G  S     I     L+N+ LA+ HA  +       ++        ++  +
Sbjct: 530 TEVLVSTNAGIMSGKLDDIDIEAWLRNSSLALTHAFKQEQVQSCHYQDYMITASQEQTRL 589

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A+ N E  + Y PII L  +++ G EAL++W  P  G +S  +F+ +AE   MI
Sbjct: 590 TAELQRAITNHEFQVYYQPIIDLKTDQVSGAEALVRWHSPTRGLVSPLDFIPLAESTGMI 649

Query: 768 KAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPS 826
             I   +L +   D     D+   P  F + +N++ ++LL       ++ +++ T    +
Sbjct: 650 IDIGQQVLTQACSDTKQQIDKGLWPNAFSLHVNLSVRELLHPLYVTTVKQILATTQLPAA 709

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +ES ++  P  +   L +LR +GI + +DDFGT  S L+YL  +PFD +K + S
Sbjct: 710 NLTLEVTESRLVSQPALTNKTLEQLRDLGIHIAIDDFGTGYSSLAYLTQLPFDALKVDRS 769

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            ++    ++   AI+ +I+ +       I+A+ +      + L ++GC Y Q  + + P 
Sbjct: 770 FVSQMLESKSHTAIIAAIVTITNVFNAEIVAEGVETAEQAQRLKQLGCRYAQGFYYSRPK 829

Query: 945 GFNS 948
               
Sbjct: 830 PLAE 833


>gi|295111371|emb|CBL28121.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Synergistetes
           bacterium SGP1]
          Length = 617

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/584 (19%), Positives = 233/584 (39%), Gaps = 30/584 (5%)

Query: 392 ATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A         S  +  +     +      +   D     +     + +++      + G 
Sbjct: 30  ALSGRQAASLSTEQLLASRDAILDQLPVPLVISDEQDRILYANRALLSLINGPEDFLKGK 89

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM---IIRIRPMSNS 505
                  +        R  LD      +   + E R    D Q   +        P+   
Sbjct: 90  KLP--SILVP------RAKLDPHSEDAQDPAERE-RQDLPDGQALILLGAEGVALPVKQL 140

Query: 506 NGDILR-----YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            G +        +    D++EQ+ + E +L  A+ D+LTG+PNR  F+D L   L    +
Sbjct: 141 TGSVTWNAYKLTLSALFDLSEQQAANERLLRIAYYDSLTGLPNRDCFMDSLNQELRKLNS 200

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            D    +V+++++D++K +N+  G    D VL+ +  R   +L     + R  G+    I
Sbjct: 201 ADGYTFSVILLNMDRFKLLNEQYGSDTADKVLIEVIERTKTILHGFATIFRTGGDEVMAI 260

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   ++   +      + K I++PI +    +  +A +          ++ ++L     +
Sbjct: 261 LKGVSSQSYLESTLDRLLKLISLPIWIDGDSVFPSACLTAMLDIPKDFSALQVLGGLSSS 320

Query: 681 MYHAKHRGGNH-------VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           M  AK RG           E     +   D + +  ++  ++ N +    + PI      
Sbjct: 321 MKAAKKRGLGCVLFVSPATEHRDKEAKHKDILKVTAEIQTSLLNDQFIPYFQPIYNTATM 380

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +++G E L +W HP    +    F+  AEE  ++ AI+  ++ +    + S+  +     
Sbjct: 381 QLLGFETLARWRHPTGDILPPGAFIPEAEESGLLTAIDRSIVSQALAVMESFTRKYPNLN 440

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             +  N +   L D    + ++  +    +   R  L  +E V+M N   +R  L +L+K
Sbjct: 441 FHLNANASGLSLKDASFFDFIEGKLKNVTFPTDRFTLEITEDVLMENLGEARGRLEKLKK 500

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           + IS+ LDDFGT  S L Y+  +P D++K + S +     + K  ++++S+I MA+++  
Sbjct: 501 LNISVALDDFGTGYSSLQYISQLPVDSLKIDRSFIDQMLKSRKTASLVKSVIEMARSLNL 560

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I+A+ I  +   + L        Q    + PL      + LK+
Sbjct: 561 GIVAEGIETKDQNQWLAEYNV-AGQGFFFSVPLPVEKADEFLKD 603


>gi|302871203|ref|YP_003839839.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574062|gb|ADL41853.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 612

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 211/436 (48%), Gaps = 11/436 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     +   AF D LT +PN+ S +  L   +     D+     ++ +++   +K+N +
Sbjct: 180 KDYKNKLEFLAFFDELTKLPNKNSLIRWLNLRISNVDRDNTY---LIFLEVRNLEKLNVM 236

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  + D+++V +++RI ++L     + ++  +RF II   EN S  I +    +   + 
Sbjct: 237 YGYDLVDELIVQISKRIEDILSKESKVFKIGFDRFAIICKVENVSDHIEN----LLSQLT 292

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +  N+    I V  +IG      +  +++ +L+  +LA+  AK +G N  E F+ S    
Sbjct: 293 VIYNINGNLIRVNYNIGATVIDDANDSTASILRKCDLALIKAKEKGLNEYEVFKPSLEIQ 352

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I+++L   ++ +E  L Y PII L + +I GLEAL++W + K   +S  EF+ I
Sbjct: 353 TLKEGIIEKELRNGMDLNEFILFYQPIINLYNRQIYGLEALLRWHYLKSVFVSPLEFIPI 412

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +   +L++       + +  N     I INI+ +   D E    +  ++  
Sbjct: 413 AEKCGLIVDLGKIVLKQSLESAKIFSNYFNR-DFVISINISPRQFSDKEFISSIIQIVEN 471

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 +++   +E V + N   +  ++  L+K  I+  LDDFG   S L+YL  +P + 
Sbjct: 472 EKIKNLKLQFEITEKVAIENINYAIEVINELKKYNITFALDDFGVDYSSLNYLRKLPIEA 531

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           VK + S +     E+   ++ +II +   +   ++ + +  E   K L  +GCDY+Q   
Sbjct: 532 VKIDKSFVQEIENEETYFVVETIIKLCNKLGLKVVVEGVETENQYKILKELGCDYVQGYF 591

Query: 940 VASPLGFNSILKLLKE 955
           ++ PL F  I+K +KE
Sbjct: 592 ISKPLNFEEIVKFIKE 607


>gi|218667425|ref|YP_002427424.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519638|gb|ACK80224.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 841

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/535 (21%), Positives = 229/535 (42%), Gaps = 21/535 (3%)

Query: 430 TTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRA 487
               + TILG  ++  + G    W    H    +   +  L+        R    +R   
Sbjct: 197 VNTRMLTILGASSADELIGHP-VWGIIHHEEVGEQVGQFALEVLSEGYATRRDVPYR--R 253

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D Q  +  I  + +  S+G + R +    D+TE+ + ++ +   +  D LTG+PNR++ 
Sbjct: 254 LDGQMVFTDISGQRLDGSDG-VQRILWTHVDVTERHRLMDELTQLSLSDPLTGLPNRRAL 312

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   +  +   ++L  +V++ID+D +K +ND  G   GD VL ++ +R+ + L+  D
Sbjct: 313 DTELGKAMARADRHEHL-LSVVMIDLDGFKPVNDTCGHEAGDMVLRTIGQRLRKGLRGTD 371

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWT-S 665
            +ARL G+ F ++L +     +I      + + I  PI L ++    +  S G   +   
Sbjct: 372 FVARLGGDEFVLLLENCTALEEIEVVMRKIGEMIRQPIELPDKSRAEIDLSAGICLYPFG 431

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
                  +L+ A+ A+Y +K+   + V  + +             +   +    L + Y 
Sbjct: 432 DSHNPDALLRYADQALYESKNHKADRVHYWTLFGDSVPVRQ--NVIQTRLREGGLLVHYQ 489

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA--EELCMIKAINLFMLERIARDII 783
           PI+     +IVG+EAL +        +  +EF+ +   E+      ++  +L +   D+ 
Sbjct: 490 PILDNRSHKIVGVEALARLRDKDGQILYPAEFLPLITVEDT---TYLSRMVLTQALADLA 546

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                     +++ +N+A +   D+     M  +I  +  +PSRI L   ES        
Sbjct: 547 EL--DTLGCSLWVSVNVAPESF-DDHFVPCMAGVIGASDIAPSRITLEILESSNFLEHNA 603

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
           +  +L  ++++G+ L LDD G+  S L  L  +P D +K +   +       + +  L S
Sbjct: 604 ALSVLHGVKELGVRLALDDVGSAYSSLLRLKDLPIDEIKLDQGFIRSLEDRPQDLYFLAS 663

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I  +A  +   ++ + +  +     ++ M    +Q   VA P+    + + L +R
Sbjct: 664 IRDLAIGLGVDLVVEGVETDDIADAVSVMDIKLLQGYGVARPMPMAQLREFLAQR 718


>gi|260777679|ref|ZP_05886572.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605692|gb|EEX31977.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 637

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/450 (22%), Positives = 200/450 (44%), Gaps = 7/450 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++ + + I      D  TG  NR +        +       +L+   + I     
Sbjct: 187 QEIDKRRAAEQKIRYQQRHDLGTGFLNRSALEHEAEHFIKDVGVSPSLQAAAIHIGFTNG 246

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G +  + VLV  ++R+G+L ++  + AR +     ++L S      +   +  
Sbjct: 247 RRIQSKYGYSSWETVLVQYSKRLGDLSQYQLLTARPTSTDLVLLLESSQLESDLNSISHQ 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + +      ++   ++ + A IG ++ T+  +    +LK A  AM   K  G      S 
Sbjct: 307 LVEVSQSEFDIDGDKLHLNAYIGIST-TNDTLCPKSLLKYASEAMQSCKDSGHKFSYYSQ 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            ++  +     ++  L  AV N +L L + P +     +  G EAL++W HP  G+IS+ 
Sbjct: 366 AIADIQKHINQMESYLLQAVRNDDLLLYFQPKVSPTTHKWTGAEALLRWRHPILGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L    +    W +   +    I +NI++  L +    E ++
Sbjct: 426 TLIHMAEQNGLIFEVGSFVLRAAIQKAAEWAE--YVDDFKIAVNISAIQLKNPHFIEQIE 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++        ++L  +ES ++ +   +R  L  L  +G++L+LDDFGT  S  +YL  
Sbjct: 484 DLLNAYQLPAKFLELEVTESGLIADEVTARNTLIALNNLGVTLSLDDFGTGYSSFNYLKK 543

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      E+   I+RSII +AK +   +  + I  E     +   GC+
Sbjct: 544 FPFDAIKVDKSFVQQLDESEEDKEIVRSIIHVAKKLNLIVTVEGIESETHEDFIISEGCE 603

Query: 934 YIQDSHVASPLGFNSILK-LLKERFPLVKN 962
           Y Q      P+  +     LL++ +P   N
Sbjct: 604 YGQGYFYGKPMPCDEFETGLLRQNYPGNTN 633


>gi|326797145|ref|YP_004314965.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547909|gb|ADZ93129.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 643

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/433 (24%), Positives = 207/433 (47%), Gaps = 13/433 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +   + +   +  D+LT + NR  FL  L  +       +N   ++M +D+D +K IN
Sbjct: 219 EIEDRTKQLDRLSRFDSLTNLLNRYGFLKALKRV-----QIENEHYSLMFMDLDGFKSIN 273

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG AVGDD+L     R+   L   D++ R  G+ F ++ +   +   +   A  + + 
Sbjct: 274 DRLGHAVGDDLLQQAAARLMSSLNERDLVGRWGGDEFLVLTL---DREGLEQKANGLIED 330

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I+ P  +    +++  +IG A +     +   +++NA++AMY  K      V  F  + +
Sbjct: 331 ISRPYVINRMNLSIGVTIGVAHYPEHGRSYDLLIQNADIAMYQQKKAEKGQVGFFSQAMY 390

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 +  K+ L  A+ N+ L L Y PI     +E+V  EAL +W       I   EF+
Sbjct: 391 EKYTRELTLKDQLEDAILNNHLELYYQPIFDARTKEVVSFEALCRWQL-DGEFIPPDEFI 449

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           +IAE+  +I+++  ++L+R   D +S           I IN++     D+E  E ++ ++
Sbjct: 450 VIAEQHGLIQSLGNWVLKRACEDSVSLSQMYPSAA--IGINVSVIQFQDDEFVELIEVVL 507

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++   S + I L  +ESV   +       + R+R++GI ++LDDFGT  S LS +  I  
Sbjct: 508 AEVGVSSANIHLELTESVFATDKGGLLKRIERVREMGIKVSLDDFGTGYSSLSVIQDIGV 567

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K + + +    +   AI+ ++  M++++   ++A+ +  +    +L   G  + Q  
Sbjct: 568 DVIKIDRAFINNIFKNGSAIIGAVAHMSQSMGQGVVAEGVETQEQADQLIANGIYHHQGF 627

Query: 939 HVASPLGFNSILK 951
               P+  + ++ 
Sbjct: 628 LYNKPMPLSELMA 640


>gi|116251447|ref|YP_767285.1| transmembrane GGDEF sensory box protein [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256095|emb|CAK07176.1| putative transmembrane GGDEF sensory box protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 709

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 202/439 (46%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  +     A  D+L+G+ NRQ  L  L  +     +       + ++D+D +K +ND
Sbjct: 283 LRQLAQTARFEASHDSLSGLLNRQGLLRLLEDLESPDPSSPR----LYLVDLDGFKAVND 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  ++  +          ARL G+ F ++ +      +I +    +    
Sbjct: 339 AWGHAVGDDLIRIVSNALMTSHPEVLAAARLGGDEFALVHVGGAAREEIEEA---ILALF 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  +  R I V ASIG A+     I+  E+L+ A++A+Y AK  G      +     R
Sbjct: 396 AEPFKIDGRTIEVGASIGAAARDGD-ISPLELLRRADMALYRAKANGKGQAVEYDPELDR 454

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++  L  A+ +  +   + P++      + GLEAL +W     GN+S   F+ 
Sbjct: 455 ERIRVAELEGLLKNAIGSGAIEAAFQPLVSASTGAVTGLEALARWKTAT-GNVSPEIFIP 513

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+ + ML        SW      P + + +N++   L + E    + A++ 
Sbjct: 514 LAERCGLIDALGVHMLRTSIGHAKSW------PGLTLSVNVSPIQLCNPEFAAQVIAILQ 567

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  + P+R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L    FD
Sbjct: 568 ELDFDPNRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFD 627

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++    T     ILR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 628 RMKIDRSLVSALDVTTNGADILRATISLATALQIPVTAEGIENSRQAAILRDAGCDQLQG 687

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+    I   L+E 
Sbjct: 688 YMLGKPMSACDISNRLREE 706


>gi|312143232|ref|YP_003994678.1| diguanylate cyclase/phosphodiesterase [Halanaerobium sp.
           'sapolanicus']
 gi|311903883|gb|ADQ14324.1| diguanylate cyclase/phosphodiesterase [Halanaerobium sp.
           'sapolanicus']
          Length = 509

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/428 (25%), Positives = 200/428 (46%), Gaps = 6/428 (1%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D+LT +PN++   + L   +  S  + N    V  I+I+    + D+ G     
Sbjct: 80  YQQAYYDSLTSLPNKRYLDEELKAKIKKSQNNKNYNFAVFYINIENINTLMDIKGYKQTS 139

Query: 590 DVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           + +  L   + ++ K      +A  + ++F II+ +  N  K +  A  +  ++      
Sbjct: 140 NFIKKLADILKDIEKEDSKSFIANYNYSKF-IIINNRVNKKKYSKKAEKILAAVQKLWEK 198

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVM 706
            E +  +  +IG A +  S +    ++  A++A +     +         +   +     
Sbjct: 199 GEIDYYLNINIGIAFYPDSALDGEGLISAAQIAAHSIENKKQNYRFFDQELYLRKLKFEN 258

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +K+DL   +E  E  LVY P IRL D++IV LEALI+W HP  G IS +EF+ IAE+  +
Sbjct: 259 LKQDLRTGLEKDEFSLVYQPKIRLSDKKIVSLEALIRWQHPDLGIISPAEFIPIAEKTHL 318

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I+ I  ++L+ + + I  W        I + IN++  +L +    + +     K      
Sbjct: 319 IREIGCWVLDEVLKQISKW-KNNTEEEIKVSINLSPLELSNPNKIKNIDRAFEKYKIKQE 377

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I+   +E+  + N      +L +L+  G ++ LDDFG+  S L+YL Y+P D +K +  
Sbjct: 378 LIEFEITENAFLDNKYNFLKILKQLKGRGFTIALDDFGSGYSSLNYLSYLPIDKLKIDKL 437

Query: 887 LMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +     EK   + +SII ++ N++ ++IA+ +  +  +  L +  CD +Q  +    L 
Sbjct: 438 FVDNLEKEKNQLLTQSIISLSHNLDLSVIAEGVETKEQLDLLEKFNCDQVQGYYFYKALS 497

Query: 946 FNSILKLL 953
              I KLL
Sbjct: 498 PKEIEKLL 505


>gi|86148435|ref|ZP_01066726.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. MED222]
 gi|85833789|gb|EAQ51956.1| c-di-GMP phosphodiesterase A-related protein [Vibrio sp. MED222]
          Length = 792

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/448 (22%), Positives = 188/448 (41%), Gaps = 16/448 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   + +     A  D LT I NR  F   +   L  S    N    V+  D+D +K +N
Sbjct: 327 ELDDTYQQTKLLAENDQLTQIANRHQFQTFVQQSL--SKPSSNTETWVLYFDLDNFKFVN 384

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENNSLKIA-D 632
           D  G  +GD +LVS  +RI  +            + ARLSG+ F + + + N+   IA  
Sbjct: 385 DKYGHQIGDSILVSFAQRISNICNHYKTELNAHCLPARLSGDEFVVYINAPNHQENIAHR 444

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           F+  +   +            +T SIG A+  +   T  ++L NA+ AMY AK  G N  
Sbjct: 445 FSNDLLTPLQKGFVTESGNFPITVSIGIATHPNDGDTIEKLLSNADTAMYQAKRAGKNQF 504

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             + +   ++ +    I+  L     + E  LVY P +      I+G+E L++W     G
Sbjct: 505 ADYSLDLDKTIQRQASIESALRENNFDEEFKLVYMPYMDSTGSYIIGVEVLLRWHSKHLG 564

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE+  + + I+ ++++         + Q     I + IN++S  +    L
Sbjct: 565 LVPPDEFIPIAEQTGLFEIIDRWVIQNAFASFHQLQAQF-DHSIQLSINLSSAGIKTTHL 623

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++         P+ I    +E+    N +    LL +L  +G  L +DDFG+  + +
Sbjct: 624 ADFIKEHAKINQIPPNLIDFEITET-FYSNSQGF-PLLNQLSYMGYRLAIDDFGSGYTSI 681

Query: 871 SYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           + L   P   +K + + +          I++ II +       + A+ I  +   + L  
Sbjct: 682 TQLVQYPTQKIKLDKTFLDTLIETDNQNIVKPIIGLCHAQGKKVTAEGIETQCMHQWLQD 741

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
             CD +Q  +   P+    + +  ++  
Sbjct: 742 AQCDMLQGYYFGKPMPLEELTEWYRQHQ 769


>gi|254501569|ref|ZP_05113720.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437640|gb|EEE44319.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 802

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/452 (23%), Positives = 218/452 (48%), Gaps = 19/452 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++    +   I   AF D++TG+PNR     +  +IL+ +         +++ID+D +K+
Sbjct: 337 VSRISMASAQIEKLAFSDHVTGLPNRDHLHLQAASILEEA-ISPRRGGIILLIDLDDFKE 395

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF------------PDILARLSGNRFGIILISENN 626
           IND+ G   GD  L +    + ++ +             P I+AR+ G+ F +++    +
Sbjct: 396 INDLYGHLAGDQHLKACAETLSKVAQDAKVSTPEGKPFAPPIVARIGGDEFIVMIQGMID 455

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +I +F   +R ++A PI   E  IT  ASIG A + +  +   E++K A++AMYHAK 
Sbjct: 456 DEEIEEFLAQVRNALAEPI--AELNITPGASIGCAKFPNDGVELIELIKRADIAMYHAKR 513

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            G N  + +           I+ DL  A+E  +LYL Y P +     +++ +EAL +W+H
Sbjct: 514 SGKNKTQVYAPHIGTKSVSEIRRDLTEAIEQEKLYLEYQPKVCTRRRKVISVEALARWEH 573

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P++G      ++        +  +  ++++   +D+   R + +   +++ +NI +   +
Sbjct: 574 PEFGLFMPKFWVPSLMGSNAMPRLGEWVMKTAMKDLDRMRSEGHD--LWMSVNIGTDHFV 631

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  ++A+  +  + P  +++  +E  +  + E++     +L  +G  +++DDFG  
Sbjct: 632 SKGFISNVEAIRDELNFDPGLLEIEVTEDTLFSSEEKAVDAFNQLHDLGYRVSIDDFGRG 691

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S ++ L  +P D +K + S++ G+++      I+   + MAK ++   +A+ I  E   
Sbjct: 692 YSNIARLANLPVDFLKIDQSIIAGASDDPRIGTIMAYTLKMAKELDCKTVAEGIETEQQA 751

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  +R+G D +Q       L    +L  L  +
Sbjct: 752 EFASRLGADCLQGYFFTPSLQVGELLNWLDAQ 783


>gi|297559143|ref|YP_003678117.1| diguanylate cyclase/phosphodiesterase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843591|gb|ADH65611.1| diguanylate cyclase/phosphodiesterase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 682

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/433 (24%), Positives = 201/433 (46%), Gaps = 7/433 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D LTG+ NR+    R    +  +         ++++D+D++K++ND LG   
Sbjct: 243 QRDHQANHDELTGLANRKLLTLRAREEIAHAQQRGG-SVGLLLLDLDRFKEVNDTLGHPT 301

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L ++ RR+   ++  D+++RL G+ F ++L    +S    + A  +R ++A P+ L
Sbjct: 302 GDRLLQTVARRLTHSVRPGDLVSRLGGDEFAVLLPQVRDSASACEVAFRLRGALAEPVRL 361

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVM 706
              +  + ASIG A         + +++ A++AMY AK  R G            + R+ 
Sbjct: 362 DGMDFDLQASIGIALHPHDAPDFALLMQRADVAMYVAKADRTGVESYDPGKDRNSTARLS 421

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  +L   +    L + Y P + L DE  +GLEAL +W HP  G ++  EFM + E+  +
Sbjct: 422 LYTELRRGLSEGALEMHYQPKVDLGDERPIGLEALARWRHPSRGLLTPEEFMPVVEQSNL 481

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           ++A    +L+        W  +     + + +N+  ++LLD  L   + + + +      
Sbjct: 482 LRAFTGQVLDITLARAAGWHAEGLD--LPVAVNLGVRELLDPALPATVASALREHGVPAD 539

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ L   E  ++ + + +   + RLR +G+ L+LDDFGT    L+ L  +P D VK + S
Sbjct: 540 RLVLEIGEHALITDTDAATAAVRRLRDLGVGLSLDDFGTGHFTLAQLAGLPLDEVKIHES 599

Query: 887 LMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                   T+    ++R+ I + K +     A+ +      +     GC   Q  H ++P
Sbjct: 600 FTARLVDRTDNGHTVVRAAIALVKALGMRATAEGVQSGELARAARDTGCHAAQGHHFSAP 659

Query: 944 LGFNSILKLLKER 956
           L    +   +  R
Sbjct: 660 LTAREVADWVAAR 672


>gi|126699080|ref|YP_001087977.1| putative signaling protein [Clostridium difficile 630]
 gi|115250517|emb|CAJ68341.1| putative signaling protein [Clostridium difficile]
          Length = 965

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/430 (22%), Positives = 189/430 (43%), Gaps = 17/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSAT----DDNLRPTVMVIDIDKYKKINDVLGI 585
              A+ D LTG        D +      S      ++     +  ID+DK+K IND+ G 
Sbjct: 539 RKIAYTDPLTG-------ADSIDKFKINSNKLFDKNNPEEYALFYIDVDKFKYINDMFGY 591

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +G+D L+ ++  I   LK  +I AR+S + F +++  + +   I      +   + +  
Sbjct: 592 DMGNDTLIHISNTIASELKEDEIFARVSADHFVLLIKYKTD-DDIKTRLNNIYNKVQILS 650

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-- 703
           N       +    G    + S    + ++  A  A    K    N    +     +    
Sbjct: 651 NPKINYYKLILDCGIYKISKSDNDINTIMDRANTARKTIKGGHKNSFAFYDKEMHKKILK 710

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  +  A+ N E  + + P   L D +I+G EAL++WD+P+ G I   EF+ + E 
Sbjct: 711 EKEIENSMVDALNNGEFIVYFQPKYSLSDYQIIGAEALVRWDNPQKGLIPPIEFIPVFER 770

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I+ ++ E + + I  W D+     + I +N++    +++   E  + ++ K   
Sbjct: 771 NGFIVNIDFYVFEEVCKKIREWMDE-GQKVVPISVNLSRMHFVNSNFIEKFKLIVDKYKI 829

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               I+L  +E+ V+ N E     +  L++ G  +++DDFGT  S L+ L  +P D +K 
Sbjct: 830 PTRLIELELTETAVLDNIEGLLDTMNNLKEKGFVISMDDFGTGYSSLNLLKELPVDILKL 889

Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + +       +     ++ ++I MAK ++  +I++ +     ++ L ++GCD +Q    +
Sbjct: 890 DRAFFTEKDESNNEKIVISNVIKMAKELKMKVISEGVETISQVEFLKQIGCDMVQGYLFS 949

Query: 942 SPLGFNSILK 951
            P+      K
Sbjct: 950 KPMPVKEFEK 959


>gi|75676831|ref|YP_319252.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrobacter
           winogradskyi Nb-255]
 gi|74421701|gb|ABA05900.1| diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi
           Nb-255]
          Length = 658

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/494 (23%), Positives = 227/494 (45%), Gaps = 14/494 (2%)

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           + GR++    +   D+     +    P+  S+ ++   +  + DI+ QK   E +   A+
Sbjct: 151 QSGRIRISEELIRTDHTTKTYLTTHEPVRISDRNL--MLSSSVDISGQKAVEEELFRCAY 208

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+P R+       +++        +R  V  +DID +K IND  G A GD++L+ 
Sbjct: 209 FDDLTGLPTRRVIEQHANSLIREGEQ--PVRFAVAFLDIDNFKHINDYYGHASGDELLIE 266

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + RR+   L+  D+L+R+SG+ F ++L    +  ++AD+   + + +  P  +   E+  
Sbjct: 267 VARRLSFGLRGTDMLSRISGDEFLLLLNPVQSDAELADYIGFLLQRLKAPFFIEGSELFA 326

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712
           +ASIG + +     +   + +NA+ AMYH K+   GG  +    +      R+ I++ L 
Sbjct: 327 SASIGVSIYPDHGDSYEVLRQNADTAMYHIKNEKKGGAVIFDSGMQREALTRMEIEQSLR 386

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           LA+ +   Y  + P + +  +++ G+EAL++  +      +   F+ +A EL +I  +  
Sbjct: 387 LAILDKRFYCAFQPKVDIRTQQVRGIEALVRLRNDDGVIQAPGTFVDLAIELGLIDELTH 446

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L  I R I    D+     + I IN+A+K   +          + KT     R  +  
Sbjct: 447 LVLAEIMRSI-DLIDERFGAGVSISINVAAKQAGNVAFMTSFARALEKTGCPA-RFVVEV 504

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E   +        +L  LR +G+ +++DDFG   S LS L  I  D +K + S +    
Sbjct: 505 TEDAFVAKTRFQTEILPVLRSLGVGISIDDFGIGYSSLSALADITADEIKIDRSFIVDIH 564

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSI 949
              +   IL++I  +   +  T+IA+ +    ++  L       Y Q  + + P+    +
Sbjct: 565 KRPRSQGILKAIESLGDALGMTVIAEGVEKFEELAYLQAATRIKYAQGFYFSEPVFLEDL 624

Query: 950 LKLLKERFPLVKNT 963
                ++  + K +
Sbjct: 625 E---SDKRAVSKRS 635


>gi|91794744|ref|YP_564395.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716746|gb|ABE56672.1| periplasmic sensor diguanylate cyclase/phosphodiesterase
           [Shewanella denitrificans OS217]
          Length = 795

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 229/472 (48%), Gaps = 13/472 (2%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           +A +   HW      P+   +      I +   I+E  K  + +   A  D LTG+ NR+
Sbjct: 314 QAPEQSIHW------PIVGKDELDNLAISLNEFISEVGKRHDDLSYLAEHDALTGLGNRR 367

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
             + RL   ++    +     T++++D+D +K +ND LG + GDD+L  + +R+  +++ 
Sbjct: 368 LLMSRLDANMNHHQRNPKFISTLLLLDLDSFKLLNDGLGHSAGDDILRLVAKRMLAMVRN 427

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D + RL G+ F I+L +      +  FA  + + I         ++ + ASIG A+   
Sbjct: 428 YDTVVRLGGDEFAILLENV-EPEMVLPFAERLHQQIYESFEYNGHKLKLKASIGLAAV-K 485

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLV 723
           S ++  ++++NA+LAMY AK +G N    FRV      S R+ +++ L  A+ + EL + 
Sbjct: 486 SALSKEDVIRNADLAMYEAKRKGRNQTVVFRVDLLDAVSRRLQLEQALQEALNHQELEVW 545

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + PI+   + ++V +EAL +W       +   EF+ IAE   MI  +   + + +   + 
Sbjct: 546 FQPIVDARNGKVVAMEALSRWFL-DGIFVPPDEFIKIAEASGMITKLGKQVFDNVGASLA 604

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
             R   N P +   IN++ +   D+ L E +    +K     S I L  +ES++  +   
Sbjct: 605 DLR--LNYPDLICNINLSVRQFRDSNLEEDIVDCATKYQLPSSAIHLELTESMIATSETE 662

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSII 903
               +  L   G    LDDFGT  S L  L  +PFDT+K + S +T   +    ++R+II
Sbjct: 663 ILPTMCALVDKGYKFHLDDFGTGYSSLERLRNLPFDTLKVDRSFITPLGKGDDVMVRNII 722

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   +  ++IA+ +  E ++ +L ++GC  IQ  + A P+    +   L E
Sbjct: 723 NIGNELGMSLIAEGVETETEVHKLLQLGCWDIQGYYFARPMPLAKLKLWLAE 774


>gi|319935375|ref|ZP_08009812.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Coprobacillus sp. 29_1]
 gi|319809591|gb|EFW06004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Coprobacillus sp. 29_1]
          Length = 560

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/548 (17%), Positives = 206/548 (37%), Gaps = 25/548 (4%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           ++  D+ ++    + ++     L    +   I  W   +H  D+  ++  +   +  R  
Sbjct: 30  IYIVDMKQNISLISDNMYEDFDLPGRIVEDLISVWGKLVHEKDQKRYQDSISDMLSCRTN 89

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E++V     ++ W++ R     + + + + + G+   I  + K           D 
Sbjct: 90  EHNLEYQVLNRKKEYIWVVCRGLLTRDEDQNPIMFAGVVTPIGGRGKV----------DR 139

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            TG+       +     +DL       +   +++ +D + ++N++     GD VL ++ +
Sbjct: 140 TTGLLT----QEECKNTIDLFQNQGYEKGGFLLLGLDNFSRLNNLKNHIFGDTVLRNIAQ 195

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I   +     + R  G+   I          + +    ++        +       T S
Sbjct: 196 MIVSTVPHESSVYRFDGDEIAIFYPQAT-ISDMKNIYQKIQFYTNHEHEIDGSSYFCTVS 254

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV 715
            G A          E++K A  A+  +K  G N    +           + I   L  +V
Sbjct: 255 GGIAMLGEDAYDYLELIKCAMSALDASKKGGKNRCTVYSPELLKSNLYTMEIINQLQRSV 314

Query: 716 ENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
                +  LVY P +     E+ G+E L++W     G I  +EF+ + E    I  +  +
Sbjct: 315 LAGMKDFSLVYQPFVSSNGLELKGVEVLLRWTSETHGKIGPAEFIPLLESDNSIIPVGKW 374

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++E+       W +        + IN++   ++D +    ++ L+SK   SP  I L  +
Sbjct: 375 IMEQAFITCKEWLNFYPE--FVMNINVSYLQIIDKDFIMFVKHLLSKYNLSPRHIVLELT 432

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG---SLMTG 890
           ES  +      +     LR IGI   +DDFGT  S L  L   P D +K +    S +  
Sbjct: 433 ESYFVTEMLILKDAFKSLRDIGIRFAMDDFGTGYSSLGLLSQSPADIIKIDRLFISFIND 492

Query: 891 STEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  + + ++I +  ++  ++  + +    ++  +  M  D IQ  +++ P+     
Sbjct: 493 KDHSFNRSFIEAVIKLCHSVGISVCVEGVEYIDELNTVCDMNVDSIQGYYISKPMTKEEF 552

Query: 950 LKLLKERF 957
            K   ++ 
Sbjct: 553 EKKYCQKN 560


>gi|15806634|ref|NP_295352.1| c-di-GMP phosphodiesterase A [Deinococcus radiodurans R1]
 gi|6459396|gb|AAF11189.1|AE002006_2 c-di-GMP phosphodiesterase A [Deinococcus radiodurans R1]
          Length = 790

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/413 (24%), Positives = 194/413 (46%), Gaps = 12/413 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ ++ + +      D LTG+PNR +  + L   +      D+    ++ +D+D +K +N
Sbjct: 386 EEGRTQQRLAAQLRHDALTGLPNRLALHEALGQQVAA----DSAPFALLCLDLDHFKTVN 441

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             LG   GD +L+ +  R+   +       R  GN F ++L +   +      A  +  +
Sbjct: 442 HTLGQPAGDALLLYIGERVQAAVGEQGQTFRRGGNEFVVLLPAVRAAPDALTIAQTLLDT 501

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SS 699
           I  P+ L  + + VTASIG A +      S  + KNA+LA++ AK  GG         S 
Sbjct: 502 INEPLLLDGQALVVTASIGLALFPEDGRDSLTLQKNADLALHAAKQEGGQAQRYRNALSQ 561

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++R+ + + L   + N EL L Y PI+ +   + V +EAL++W HP+ G +S   F+ 
Sbjct: 562 AANERLELTQALRSGIGNGELVLHYQPIVEVRSGKTVAVEALVRWQHPRLGLLSPDRFIG 621

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  +  ++L    R + +WR+      + + +N+A + L     C+ ++  + 
Sbjct: 622 LAEDNGLIVPLGRWVLNTALRQLAAWREHWPE--LRVSVNMAPRQLQQPGSCQEIRDALR 679

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  ++L  +E  +  + E     L  +R+ G+ L +DDFGT  S LS L  +P  
Sbjct: 680 AYALPPDALELEITEQTIC-DEEALEPFLPLIRE-GLRLAIDDFGTGYSSLSRLYRLPAQ 737

Query: 880 TVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            +K + SL+   +        ++ ++I  A+     + A+ I     +  L +
Sbjct: 738 ILKLDRSLIQDLSADNATDGPLVSALIAFAQRFGMQVTAEGIETAEQLHLLRQ 790


>gi|115524468|ref|YP_781379.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115518415|gb|ABJ06399.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 666

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 202/437 (46%), Gaps = 11/437 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR  F D     +  SA         ++IDID +K IND  G +VGD
Sbjct: 222 ERIARTDPLTGLANRSHFQD-----ISQSACRSGKGLAFVLIDIDNFKTINDSRGHSVGD 276

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            V+ S+   +       D+  RL G+ F +IL  ++ S +    A  +  ++ MPIN+  
Sbjct: 277 GVIRSVANLLRSACNEHDVAVRLGGDEFVVILQGQDTSARAVTLAERLSTAMRMPINVAG 336

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
             +  + SIG A+    +I   ++L  A++A+Y AK  G   +  F         +   I
Sbjct: 337 NALFTSCSIGIAAQEDGEIDVDDLLARADVALYRAKDEGRACIRVFDAKMQSELDLQRCI 396

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A +  EL+L + P + L   E++G EAL++W HP+ G I   + +  A  +   
Sbjct: 397 DIDLPGAFDRKELHLEFQPQVVLSTGEVIGFEALLRWKHPRMGMIPPPDIVNAAIRIRQA 456

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+ E     I +  D+   P + + IN++ ++   +     ++ L S+    P R
Sbjct: 457 NLLTRFVAEEACVFISALDDRQL-PKVKVAINVSPREFSMHSPARILKELTSRYSIDPKR 515

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I++  +E  +  +P+     L  + + G  L +DDFG   S +S L  +  DTVK + S 
Sbjct: 516 IEIEVTEEALF-DPKHCATELQLIDEYGFGLAIDDFGVGHSSISNLMAVAIDTVKIDRSF 574

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++G     +   ++ +I  ++  +   IIA+ +  E D++ L  +GC Y Q      P+ 
Sbjct: 575 VSGIGVNLQHQQLVAAITAVSMPLGQRIIAEGVETEEDLQTLRMLGCSYGQGWLFGRPMP 634

Query: 946 FNSILKLLKERFPLVKN 962
            N  +  L  +   + N
Sbjct: 635 SNEAIDWLARKRSELDN 651


>gi|332188670|ref|ZP_08390385.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332011287|gb|EGI53377.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 684

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/684 (20%), Positives = 263/684 (38%), Gaps = 50/684 (7%)

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY------ 328
                 ++  +        +      F+        +RI    +    T  +++      
Sbjct: 9   TQEHDLRLVVLALLICLIGSAATVQLFHRVRAATGFSRIGWIVLTAVATGTMVWATHFVA 68

Query: 329 -HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
               +     VL     +   +  I L +        D ++ A +GG ++    +G +V+
Sbjct: 69  MMAFRATAPVVLDPILTLASLLAVILLAVPGLALAAADRVRAATIGGAIV---GVGVSVM 125

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            +V    Y   GI S                W+W  V   V  +  +      A   + G
Sbjct: 126 HYVGMAAYRVDGIVS----------------WEWHYVVASVLLSAGLGAA---AFRVLRG 166

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W               L     +  G    +  V         + +    ++ +  
Sbjct: 167 GEERWRRV-----GAVGLLSLAVAALHFTGMAAMDITVLKLGEGLSNLTMVALAVTTTVA 221

Query: 508 DILRY----IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             +      I    D   Q ++   +   A  D LT +PNR SF+  L            
Sbjct: 222 TCIIVGCAAISALIDGHTQTEAYRRLRQMAMHDGLTDLPNRTSFIHELEQ--RFVIRGGY 279

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+++D+ ++K +ND  G   GD +L++L  R+  +L+  + +ARL G+ F  ++ S
Sbjct: 280 PCMAVIMMDLSRFKVVNDTYGHQAGDQLLIALAARLAAMLRPGEYIARLGGDEFSAVV-S 338

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  ++ DF   ++ +   P         + A+IG A        +  +L  A+LAMY 
Sbjct: 339 YGDHGELLDFLERLKAACDAPFVFERFTAAIGANIGIALAQVDGDDADSLLAKADLAMYR 398

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK    N    +          R  +  DL  A++     L Y     +   EI G EAL
Sbjct: 399 AKSAHSNEPCFYDSQMDDAIKTRRELIADLRSALDAEAFELHYQVQAAIPSGEITGYEAL 458

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G I  S+F+ +AE+   I  ++++++ +   +   W ++       + +N++
Sbjct: 459 IRWRHPVRGVIPPSDFIPLAEKSGDIVPLSIWIIRQACFEAALWPNRH-----SVSVNLS 513

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L D+ L E +++ +  +  +P R+ L  +ES ++ +   +   L  L+ +GI++ LD
Sbjct: 514 PIHLADSRLVETVRSALVDSGLAPERLTLELTESAIIHDRRFALDQLRALKAMGIAIALD 573

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFG   S L  L   PFD +K + S +        A  ILRS+  +   +   ++A+ + 
Sbjct: 574 DFGVGYSSLDVLRSFPFDRIKLDASFVAEIEHDEQAVSILRSVAALGTTLNIPVLAEGVE 633

Query: 920 GEIDIKELTRMGCDYIQDSHVASP 943
               +  ++R GC  +Q   +  P
Sbjct: 634 QAAQLSIVSREGCAAVQGYLIGHP 657


>gi|315123099|ref|YP_004065105.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas sp.
           SM9913]
 gi|315016859|gb|ADT70196.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas sp.
           SM9913]
          Length = 751

 Score =  381 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 190/437 (43%), Gaps = 13/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +KK ++ +   +  D+LT +PNR++  D                 ++ +I+I   + +N
Sbjct: 323 AEKKRIDELFHLSRHDDLTKLPNRKALRDSFEE-------KKETSFSLAIINITNLRSMN 375

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G+  GD  + +    +      P ++ R SGN F II     +      F   +  +
Sbjct: 376 NRFGMEFGDKAIKTFAGFLKTTFLSPYLVFRNSGNEFCIIAPHTFDEQNRRAFEHILESA 435

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I         E  +  S+G A +    IT S+++++A LA   AK  G            
Sbjct: 436 IQQ-YETNNSERLLNISVGIACYPEHGITKSKLVRSAHLANQWAKDTGQWLCHYHADIKQ 494

Query: 701 RS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ ++E L +A+    L + Y   +     +I  +EALI+W   + G +S +EF+ 
Sbjct: 495 AYLRRLKVEERLNMALNEQSLSMAYQCQVNEQ-GKIHAMEALIRWQDGELGMVSPAEFIA 553

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I  I  F+L R   +    +   +  P+ + INI+      +     +   + 
Sbjct: 554 IAEQSDLIFKIGDFVLARSIGEFAKMQQH-SDTPLELAINISVMQFQSSVFIPTLLHSLE 612

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               +   I L  +ES+ M N E     +  L+  GI  ++DDFGT  S LS L  +P D
Sbjct: 613 THNVTAQSIILEITESLFMDNLEHVIDTIKSLKSRGIRFSMDDFGTGYSSLSLLRRLPID 672

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +       K  ++++SII +A +   ++IA+ +  +     L  +GC   Q 
Sbjct: 673 ELKIDKSFVDDILVDSKSNSMVQSIIAIANSHNLSVIAEGVEEQAQFDMLVDIGCKRFQG 732

Query: 938 SHVASPLGFNSILKLLK 954
            +   P+   ++++ L 
Sbjct: 733 YYFYKPVAAATVIEYLT 749


>gi|15077777|gb|AAK83338.1|AF372703_9 unknown [Pseudomonas syringae pv. syringae]
          Length = 534

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/428 (26%), Positives = 206/428 (48%), Gaps = 13/428 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D L+G+ NR+ F ++L   L         +  V +ID+DK+K IND  G A GD
Sbjct: 101 ESLARHDPLSGLLNRRVFHEQLVARL----QQPATQTAVFLIDLDKFKLINDTHGHAAGD 156

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             + ++   + +        +ARL G+ FG+ +  + +  ++A  A  +   IA   ++ 
Sbjct: 157 AAICAVAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAENILAKIAA-FSVG 215

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
              + ++A++G A           +L+ A+ AMY  K  G      + VS  R  R+   
Sbjct: 216 LPRVALSATLGIAIAPMDGSDPDLLLQRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQ 275

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +L LA+E  ++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +
Sbjct: 276 FARELTLAIEEKDIQPFYQPIVSLPEQHLAGFELLARWLHPERGIILPLDFIPVAEQLGL 335

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           IK +   +L +       W          + IN+ S  +   +  + ++ L ++  +  S
Sbjct: 336 IKPLTATLLLQAFDQARDWPS-----DFTLAINVTSLMIESPDFPDWLEQLANEGKFPLS 390

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S
Sbjct: 391 RLEVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTRLAIDKIKIDRS 450

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + E +  ++++I+ + K++   I A+ +  E     L    CDY Q      PL  
Sbjct: 451 FFDTTLENQNEMVKAILALGKSLRMKITAEGVEHERLADWLATHECDYAQGYLFGRPLPL 510

Query: 947 NSILKLLK 954
             + +LL 
Sbjct: 511 AQVKELLA 518


>gi|317129701|ref|YP_004095983.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
 gi|315474649|gb|ADU31252.1| diguanylate cyclase/phosphodiesterase [Bacillus cellulosilyticus
           DSM 2522]
          Length = 448

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 181/402 (45%), Gaps = 6/402 (1%)

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +    +    V+ +D D++K IN++    VGD +L  +   + E          L  N 
Sbjct: 41  KATRTKDSTAFVIFMDFDQFKSINELFSFEVGDQLLQLVYHTLNEKSPSNCTWISLGNNS 100

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F  ++        I     + + SI+  + +   E  +  + G + W +       ++K 
Sbjct: 101 FMALVTGVYEKSDIEALVESWKNSISRSLVVDSYEFNLKPTFGSSKWFNDAHDLQSLMKC 160

Query: 677 AELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A++A   AK   +                   ++ ++   ++N E  L YHP   +    
Sbjct: 161 ADVAHRQAKGKPQSFFEWYDPVYKERIVAAFELESEMHSGIKNGEFELYYHPQWDVDKGG 220

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
             GLE L++W HP  G I   +F+ IAEE  +I  +  +++E+  ++ +  +    +  +
Sbjct: 221 WGGLEVLVRWRHPNKGLIPPDKFIDIAEETGLIHPLGDWIIEKACKNHVVLQRTTGLKDL 280

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I IN + K L+     E +  +I +T   P    +  +ESV + + E+++ LL + R+ 
Sbjct: 281 PIAINFSIKQLMKKNYIEKLVNIIKETGLDPHHFIMEITESVAV-DVEKAKSLLSQAREH 339

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIET 911
           G+ +++DDFGT  S LSYL  +P D +K + S +       EK+  +LR I+ + K +  
Sbjct: 340 GMKISIDDFGTGYSSLSYLRELPIDELKIDRSFVKKTDNGDEKQKHLLRWIVHLKKVLGV 399

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           TI+A+ I  +     L R GC+ +Q  + + P+    I   L
Sbjct: 400 TIVAEGIETKQHFNMLRRWGCNKLQGYYFSKPISQKEINNYL 441


>gi|114775598|ref|ZP_01451166.1| Hypothetical protein yddU [Mariprofundus ferrooxydans PV-1]
 gi|114553709|gb|EAU56090.1| Hypothetical protein yddU [Mariprofundus ferrooxydans PV-1]
          Length = 430

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 203/435 (46%), Gaps = 10/435 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E  +     DNLTG+P+R    D +   L  +  +   + ++  +D      I+ +
Sbjct: 3   KNMSEANVVKLLHDNLTGLPSRLLLHDMIELELAHARRN-GTQVSLFHLDPFPMSDIDHL 61

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD+VL  + +R+   ++  D + R+  + F +++ +  +  + +     +  ++ 
Sbjct: 62  FGYKIGDEVLKQIAKRLVASVRESDTVVRMDADEFAVLMPTVGD-DEASIVIEKVTNALE 120

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-R 701
            PI + E  I +   IG AS+ +    + E+++ A  A+  AK      V    V+    
Sbjct: 121 APIEVGELCINIGVMIGVASYPTHCNNAEELIRGALKAVKQAKAEHIPVVYHDGVADRSA 180

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S  + +   L  AV N EL L Y P + L   EI  +EAL++W  P  G      F+ IA
Sbjct: 181 SFHMEVFGRLRHAVRNGELTLNYQPKVDLQSGEIRSVEALLRW--PDSGITP-DVFIPIA 237

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  +++  +AR ++ WR Q     + + INI+++DLLD  +   +       
Sbjct: 238 EKTGLICEITRWVVTEVARQMLEWRHQGIQ--VKVAINISTRDLLDKSIAAFIVDAFDSR 295

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S++ +  +ES VM +   +   L  LR  G  + +DDFGT  S ++YL  +P   +
Sbjct: 296 KVDKSQVIIEVTESAVMKHATLAIERLSFLRDQGFGVAIDDFGTGYSSMAYLSDLPATEL 355

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +     +++   +++++I +A   +  ++A+ +  +     L   GC+ IQ   
Sbjct: 356 KIDRRFIGEILKSKRDKKLVKAMIALAHEFDLLVVAEGVEHQQQADLLKTFGCEMIQGYL 415

Query: 940 VASPLGFNSILKLLK 954
            + P+  + +  LL+
Sbjct: 416 FSQPVEADRLAYLLR 430


>gi|258655404|ref|YP_003204560.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM
           44233]
 gi|258558629|gb|ACV81571.1| diguanylate cyclase/phosphodiesterase [Nakamurella multipartita DSM
           44233]
          Length = 814

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 194/426 (45%), Gaps = 10/426 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   AFQD LTG+PNR  F DR    L+          +++ +D+D +K +ND L
Sbjct: 362 RRENQLHRQAFQDILTGLPNRALFTDRAAHALEQ-HRQSMRPLSLLFVDLDDFKAVNDTL 420

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD++++ +  R+   ++  D +AR  G+ F ++   E+      +    + +++  
Sbjct: 421 GHPVGDELVIRVAERLRGAIRASDTVARFGGDEFAVLAEGED--ADGVELGSRLVEALRP 478

Query: 644 PINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              L E  +++ ASIG A   +   T    ++   A++AMY AK  G   +  +  +   
Sbjct: 479 RFVLGEHGLSIGASIGIAEVPAEHPTPTLDDLFSRADIAMYAAKRAGKGQIALYDSTMVL 538

Query: 702 SDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +   ++    L  A+ +  +  V+ PI+ L    +  +EAL +W       ++   F+ 
Sbjct: 539 PEAADLQYRPLLIEAIGSGGIDCVFQPILDLDSGRVHCMEALARWQVGD-QVVAQDYFIQ 597

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +A  L ++ A+   M++R    +  W ++     + + +N+    + D +    + A + 
Sbjct: 598 LAGRLKLLPALTDLMVDRACATLADWTERLGCDDLRVGVNVPPGLMADRDFPRRIDAALR 657

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P R+ L  +E  ++G+   SR +  +LR  GI L LDDFGT  S L  L  I   
Sbjct: 658 RHRIRPDRLVLEITEDALIGDVATSRAVADQLRLAGIRLWLDDFGTGYSSLLSLRQISLQ 717

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +   +            LR+++ + +++   ++A+ +        L  +GC Y+Q 
Sbjct: 718 AVKIDIEFVANIHTDPSAAQFLRALLALGRDLGLMVMAEGVELPEQAAVLAELGCRYVQG 777

Query: 938 SHVASP 943
              A P
Sbjct: 778 FLYARP 783


>gi|330958557|gb|EGH58817.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 656

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 208/434 (47%), Gaps = 10/434 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L T +  +         V V+D+D +K +ND+ 
Sbjct: 212 QLSNENLLLANQDSLTGLPNRRQFFHTLDTAMQEAMQQQTG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L+ +  R+         ++RL G+ F +++  +     + +F   + + +  
Sbjct: 271 GHRTGDRLLILVAERLMTAASDTVHVSRLGGDEFALVIKGDVGKDALLNFGRHLCRLMHD 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++  +   ++++ + A+ A+Y  K+        F  +     
Sbjct: 331 SFELSDMPIQIGATLGIATFPGTADNATQLFEYADYALYQGKNHNPGATCLFSAAHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A  ++E ++++ PII     E V  EAL +W+ P+ G++S + F+ IA
Sbjct: 391 HADGITEQALRRANLDTEFHVLFQPIIESCTRETVAFEALARWNSPELGSVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L    +  + W       PI +  N+++ D    E    +  +I  +
Sbjct: 451 ERIGMINKLTGPLLTHALQKALFWPA-----PIRLSFNLSAHDCATCESVNLIVGIIESS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ +M +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAIMQDIAQVQQAITQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q   
Sbjct: 566 KIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGFF 625

Query: 940 VASPLGFNSILKLL 953
            + P+ F   L  L
Sbjct: 626 YSPPISFEETLIWL 639


>gi|56461367|ref|YP_156648.1| signal protein [Idiomarina loihiensis L2TR]
 gi|56180377|gb|AAV83099.1| Signaling protein (CHEY,EAL,GGDEF domains) [Idiomarina loihiensis
           L2TR]
          Length = 737

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 212/441 (48%), Gaps = 15/441 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     E +   A+ D LTGIPNR  F   L  +    +   +    + VIDID +  +N
Sbjct: 305 ENANLFEELRTAAYLDPLTGIPNRAEFTRCLQVL----SEKPDKDKMIAVIDIDHFSDVN 360

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  VG+ +L ++  R+ + L     ++R+S + FG+                A  + 
Sbjct: 361 DGLGQDVGNLLLRAVALRLTDQLGDKVFVSRISADVFGVYGP------ANIVTPNAFSEL 414

Query: 641 IAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRG--GNHVESFRV 697
            A+P    E  I +  + GFAS T    +    +LK   +A+ +AK+      +     +
Sbjct: 415 FALPFRAGEHYIPLRVTCGFASATNPESVNGKGLLKQVYIALKNAKNNSFDRYNYYEPSM 474

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R+ +   L     N +L + Y P + L  +++VG+EAL++W       IS +EF
Sbjct: 475 EQDTQRRLHLVRRLRADFANRKLQVWYQPQVELKTKKVVGVEALLRWPQSDGSFISPAEF 534

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  I  +++E   R I ++ D+  +P + + +N++       +  E ++  
Sbjct: 535 IPLAEYSGLIVEIGSWVIEEACRQINAF-DEIGLPQLRVAVNVSVPQFRKRDFPELVEKQ 593

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +    P+RI+L  +ES+VM +P+    +L RL++ GI + +DDFG   S LSYL  +P
Sbjct: 594 IEQWGIDPTRIELEITESIVMEDPDLVADILRRLKQQGIQVAIDDFGVGFSSLSYLQKLP 653

Query: 878 FDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K + + +  S EK    I+ +I+ MA+ +   ++A+ I  +  +     + C   Q
Sbjct: 654 LDRIKIDKTFVNNSDEKSGKIIIETIVDMARRLGLKVLAEGIEEQSQLDYFLGLDCTEGQ 713

Query: 937 DSHVASPLGFNSILKLLKERF 957
               A P+  + ++ LL+++ 
Sbjct: 714 GFFFAKPMPADQLICLLQKQM 734


>gi|90419724|ref|ZP_01227633.1| conserved hypothetical protein with EAL, GGDEF domains
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335765|gb|EAS49513.1| conserved hypothetical protein with EAL, GGDEF domains
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 513

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/451 (23%), Positives = 206/451 (45%), Gaps = 20/451 (4%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+T+++ +L         D +T    R+ F+ R    L ++         ++++D+D  
Sbjct: 75  KDVTDRQNALIHER-----DGVTRTLTRRVFITRCGAQLKIAPASGG--YALLLVDMDYL 127

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND  G  +GD  L  L       +    ++ R+ G+ F  +L   ++       A +
Sbjct: 128 KQINDAYGHDMGDAALRHLATV-AGRIFPDSLIGRVGGDEFA-LLTECDSPEAATRRAES 185

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
              ++        R + ++ASIG A          E+++ A+LA+Y +K  G      F 
Sbjct: 186 FLTALDQTAYHAGRPLNLSASIGIAFGPGDTALFDELMQYADLALYQSKRNGRAQATLFE 245

Query: 697 VSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 +     I+ +L  A+  +EL L Y PI+   +  + G EAL++W HP  G I  
Sbjct: 246 NEMLRDQKHIRYIERELRAAILLNELELAYQPIV-TAEGRLHGCEALVRWRHPSRGIIPP 304

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ IAE+  +I  +  ++  R  RD +          +FI +N ++  L  +++   +
Sbjct: 305 VDFIPIAEQSLLIDLLGEWVFRRACRDGVEA------GSLFIGVNFSASQLKRDDVVTMV 358

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           ++++++T     RI +  +ESV M   +     L  LR +G+ ++LDDFGT  S  SYL 
Sbjct: 359 ESVLAETGMPAKRIVIEITESVAMNANDGVIRRLAALRALGLRISLDDFGTGYSGFSYLR 418

Query: 875 YIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D++K + S +   G +E    ++ ++  +A  +  +I+A+ +     +   +  GC
Sbjct: 419 AFPIDSIKIDRSFVIKLGDSEADNVLITALASVANAMGLSIVAEGVETAEQMLLASTAGC 478

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             +Q  + A P  ++ I  +L    P+    
Sbjct: 479 KLLQGYYFARPQPWSDIQAMLARGGPVRIRA 509


>gi|88704648|ref|ZP_01102361.1| Hypothetical signaling protein CC0091 [Congregibacter litoralis
           KT71]
 gi|88700969|gb|EAQ98075.1| Hypothetical signaling protein CC0091 [Congregibacter litoralis
           KT71]
          Length = 835

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 202/441 (45%), Gaps = 8/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E++ + E     A  D LT +PNR++    L   L+ ++   +    V+ ID+D++K+
Sbjct: 392 VLEREAAQEKAQYWANHDWLTRLPNRRTIKTALEKGLEHASIAGS-HLGVLFIDLDEFKE 450

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G   GD +LV+  RR+ +       + R  G+ F ++L       ++   A  + 
Sbjct: 451 VNDSYGHLAGDHLLVATARRLEQHAPPGATVTRFGGDEFLVLLPDLLTPDEVMATARELN 510

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV--ESFR 696
            S+  P+ +    + ++ SIG A       T+ E+L+ A+ A+  AK  G NHV      
Sbjct: 511 DSVVEPLVIDGFPLHLSCSIGVAIGPRDAGTAEELLRRADQALLEAKAAGKNHVLALDES 570

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               R  R  I+ +L  ++ +  L+  + P   L    + G+E L +   P+ G +S +E
Sbjct: 571 GQQRRDRRSKIRRELEASITDGRLFPAFQPQWDLQRNRLHGIELLARMSDPELGAVSPAE 630

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQAN---MPPIFILINIASKDLLDNELCEG 813
           F+ +AEE  +I  + L+ +    +   + R +        + I +N++S  L    L + 
Sbjct: 631 FIPLAEESGLIVKLGLWAVVEATQAAKALRARMPSWVREDLRISVNLSSVQLGSPTLVDD 690

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + + +      P  ++L  +ES  +      R  L  LR +G +L +DDFG   S  SYL
Sbjct: 691 LNSAVRTAGGKPEWLRLELTESRQLAEASVIRQRLLNLRALGFTLAIDDFGVGYSSFSYL 750

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FD +K + SL+     +  R  ++ SI+ MA  +   ++ +    E         G
Sbjct: 751 SSDFFDELKIDRSLLLAAMGSPTRAVVIGSIVAMAHRLGLDVVGEGAESEEQEDLYIAQG 810

Query: 932 CDYIQDSHVASPLGFNSILKL 952
           C  IQ  H+A P+  +S+L  
Sbjct: 811 CSVIQGFHIARPMPLDSLLDW 831


>gi|158426164|ref|YP_001527456.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans
           ORS 571]
 gi|158333053|dbj|BAF90538.1| putative sensory box/GGDEF family protein [Azorhizobium caulinodans
           ORS 571]
          Length = 772

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/803 (18%), Positives = 296/803 (36%), Gaps = 78/803 (9%)

Query: 173 IYLWEPNFYKDTVNSFTLYRG-IIIGVASLLAIFLTIFYM-VNRSSMLIPTFAMAWVVLG 230
           I + +   ++      T+    +++GVA    + L +  + +    +     A+   +L 
Sbjct: 14  IRVEDEAAFQRQRFPETVRHARLVLGVAFGAGVLLLLNDLRIIGEPIFPVVLALRLSLLA 73

Query: 231 YISIDFGFLSK--LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFS 288
           Y    F + ++          ++ W+  +   ++      L +YL  N            
Sbjct: 74  YTVASFRWAARMADFPRLERLIVAWQWLTGSIIA------LIVYLKSNISLP-------- 119

Query: 289 GIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF 348
               I+++  + FY  +  +   R       +          +  Y        + + + 
Sbjct: 120 ----ISLVLPVIFYLAVPVSFRWR-------VLNGSVGSLLLLLAYATDPDDPLSLLSMG 168

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHV-----LATGYFSQGIFSD 403
           IW + L                     VLI++++    +  +      A           
Sbjct: 169 IWVLVL-------------------NAVLILLVLRDNRMARLSWCAIEAERAALASTARS 209

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            E      L +   +   DI   R+                     + +   ++  +   
Sbjct: 210 HEMVEKTFLAAPIPMVVADIESGRILRMNEAGQRYFQQGPEDAPTTLGDL--HLEPD--- 264

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             +  +   +        +E R+   D      +I    M   NG      G+  DIT++
Sbjct: 265 -VQKQMMENLRRTGEISNFEARIGQGDAPARTALIGGS-MLEVNGRPAVVAGLM-DITDR 321

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             + + +   A  D LTG+ NR +F   L                ++++D+D  K +ND 
Sbjct: 322 LMAEDKVRQAALHDALTGLSNRAAFQLSLEAACAAFN-----SVCLLLVDLDSLKDVNDT 376

Query: 583 LGIAVGDDVLVSLTRRIGELLKFP----DILARLSGNRFGIILISENNSLKIADFAIAMR 638
            G   GD +LV   RR+G+ ++        +ARL G+ F ++L        I D A  + 
Sbjct: 377 YGHDAGDALLVETARRLGQQVEERVGGRGFVARLGGDEFVVLLAGVRLPEAI-DMAETLI 435

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
             +  PI    R +   AS+G A       TS E++KNA+LA+Y AK +G N    +  +
Sbjct: 436 AGLRAPIWYGGRSLIARASVGVAERMGETQTSGELMKNADLALYAAKSQGRNRAVVYAPQ 495

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     +RV +   L  A  +  +   Y P + L+   +VG EAL++W       ++ + 
Sbjct: 496 MRWAMQERVALHSALTEAASSRAIVPFYQPKVSLVTGRVVGFEALMRWRRGPQAFLAPAA 555

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F    ++  +   +   M++R+A D+    D+  +    I +N++       ++   +  
Sbjct: 556 FASAFQDPELAVLVGDAMIQRVAADVRQLLDRGVVLG-RIALNLSPAQFTHTDVGRHLLE 614

Query: 817 LISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              +         +  +E+V +    +  R +L  +   G+ + LDDFGT  + LS+L  
Sbjct: 615 RFDEARVGAEHFDVEVTETVFLGRRADHVRPILDEICGAGMHIALDDFGTGYAALSHLKQ 674

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P DT+K + S +          AI+ S+I + +N+   ++A+ +      + L   GC+
Sbjct: 675 LPIDTLKIDQSFVLDVEADRFDAAIVCSVIELGRNLGLQVVAEGVETIGQARFLAARGCE 734

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q    A P+    +   L   
Sbjct: 735 VAQGFLYAHPMSAEHMADFLAAE 757


>gi|119469158|ref|ZP_01612142.1| response regulator/GGDEF/EAL domain protein [Alteromonadales
           bacterium TW-7]
 gi|119447410|gb|EAW28678.1| response regulator/GGDEF/EAL domain protein [Alteromonadales
           bacterium TW-7]
          Length = 731

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 98/437 (22%), Positives = 190/437 (43%), Gaps = 15/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A++D +TGI NR  F++R+             +   +++D+  +  IND L
Sbjct: 306 RLFVKLRDAAYKDLITGISNRTDFIERIDDF----KNVSENKYVFVLLDVINFSDINDGL 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VG+ +L+++  R+  ++    +L+R+  + FG ++                 + ++ 
Sbjct: 362 GQDVGNKLLIAIVERLRAIVPTAQLLSRVGADVFGFLIPKS------EFVLTDFNEKLSP 415

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             +  E  + +   IG       + +  E LK A +A+ HAK         + +      
Sbjct: 416 SFSAAEHVLPIDFRIGLCQQQDFQGSGLETLKVAYIALNHAKKIKHKEGVYYSIDMQEKM 475

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +     L       +L + Y P +   D  ++G EAL++W       IS + F+ +A
Sbjct: 476 EWRLGLIRQLRHDFARGKLEVWYQPQLSFDDLSLIGCEALLRWPLDNGTYISPAVFIPLA 535

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I L++LE+  +      ++     I I +N++          + ++  + K 
Sbjct: 536 EDAGLIVDIGLWVLEQACQQQKRLENEG--TEICIAVNVSVPQFKVKGYAQTVKNTLLKY 593

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I+L  +ESVVM   +     L  L+ +GI + +DDFGT  S LSY+  +P D +
Sbjct: 594 GVDPKNIELEVTESVVMDELDTVINTLKELKALGIEVAIDDFGTGFSSLSYIQSLPIDRL 653

Query: 882 KFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + S +         A+   +I +   +    IA+ +  +   K L  +GCD +Q    
Sbjct: 654 KIDRSFIKDLNNGDTGAVAGLVISLGAKLGLKTIAEGVETQEQAKFLKDLGCDEVQGFMY 713

Query: 941 ASPLGFNSILKLLKERF 957
           A P+  N +L+ + +R 
Sbjct: 714 AKPMPENKLLEFIGKRN 730


>gi|119470868|ref|ZP_01613479.1| hypothetical protein ATW7_05996 [Alteromonadales bacterium TW-7]
 gi|119446095|gb|EAW27374.1| hypothetical protein ATW7_05996 [Alteromonadales bacterium TW-7]
          Length = 524

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/443 (23%), Positives = 208/443 (46%), Gaps = 11/443 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
                  I E +KS       A  D+LT +PNR+ F + L   +     ++    ++ + 
Sbjct: 83  MRLSLKSILEIEKSENHQRFQAEHDSLTSLPNRKCFFNLLIQHI-----NNEQPFSLFLF 137

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+  +K++N++ G ++GD++L   ++ +   L     L R+ G+ F +IL S  N   I 
Sbjct: 138 DLSNFKRVNELYGNSLGDELLCIFSKTLNLNLLNIGELHRIGGDEFALILDS-ANEQDIY 196

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D    ++ S+  P  +  +++ +   +G +S+      ++E+ KNA+LA+  AK      
Sbjct: 197 DCIDVIKGSVEEPFFISAQKVWLKLKVGVSSYPQDAFYANELFKNADLALLEAKSTQQLF 256

Query: 692 VESFRV-SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           V  F   S    + + +   +  A+ N E  L + PI     +EI G E LI+W      
Sbjct: 257 VNYFEGLSERADNFLDMTTKIKNALINHEFELYFQPIFCTRFDEIHGAEVLIRWPQKDGS 316

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+  +F+ +AE   MI  I  +++    +++   +         + +N++++DL     
Sbjct: 317 FITPDQFIKVAERTGMILNITQWVVIETIKNLQRLKSLGFTG--TMHVNLSTRDLESESF 374

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E ++ L+ +     + I    +E  +M + E +R ++ +L + G   ++DDFGT  S L
Sbjct: 375 VEFIEELLKEDPTLSNYIVFEITEGAMMTDLEAARAIMYKLNRRGFEFSVDDFGTGFSSL 434

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L  +P + +K + S +     K    AI+ S + +A  +   ++A+ +  +   + L 
Sbjct: 435 SLLRELPINQIKIDRSFINNMLTKIADYAIVESTLFLAHRLNCNVVAEGVETKELQEVLK 494

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            M C+++Q  + + PL   S ++
Sbjct: 495 SMNCEFLQGYYFSKPLPLESFIE 517


>gi|323491796|ref|ZP_08096971.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323313931|gb|EGA67020.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 636

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 96/443 (21%), Positives = 186/443 (41%), Gaps = 6/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++ +   +      D  TG  NR +     T ++   +T    +  V+ +     
Sbjct: 187 QEIDKRRAAERQVRYQQLHDLGTGFLNRSALEHEATRLIKDVSTSKTHKVGVLHVGFTNG 246

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G +  + +L+   +R+ +      I AR S      I  S++    I      
Sbjct: 247 RRIQSKYGYSTWEHILIEFRQRLHQHSALNVITARPSSTDLVFIFESDDYDNDINLLCQE 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + +       +    + + + IG +S   S   +  +LK A  AM   K  G      S 
Sbjct: 307 LVEVSQSKFAVEGESLHLHSYIGVSSSDESHC-AKSLLKYAAEAMQSCKDSGHKFSFYSQ 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +S  +     ++  L  AV N +L L + P +       VG EAL++W HP  G+IS+ 
Sbjct: 366 DISDTQKSISQLESYLLQAVRNDDLLLYFQPKVSPETHRWVGAEALLRWRHPILGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L    +    W     +    + +N+++  L   +    +Q
Sbjct: 426 TLIHLAEQNGLIFEVGSFVLRSAIQKAAEW--SVKIEDFKVSVNVSAVQLQSPQFVTQLQ 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++        ++L  +ES ++ +   +R  L  L ++G++L+LDDFGT  +  +YL  
Sbjct: 484 DLLNAYRLPAHYLELEITESGLIADEVVARNTLQSLSELGVTLSLDDFGTGYASFNYLKK 543

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      E+   I+RSII +A+ +   +  + I        +   GCD
Sbjct: 544 FPFDAIKIDKSFVHQLDESEEDKEIVRSIINIAQKLNLQVTVEGIENPDHEAFILAEGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q      P+ ++     L  +
Sbjct: 604 VGQGYLYGRPMPYDEFEANLFNQ 626


>gi|330470793|ref|YP_004408536.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328813764|gb|AEB47936.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 834

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/409 (27%), Positives = 197/409 (48%), Gaps = 8/409 (1%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+ NR+  LD     L       +    +++ID++ +K++ND LG A GD +L+ +  
Sbjct: 382 LTGLANRRHLLDEGNEQLH--KRHADGVTALVLIDLNHFKEVNDTLGHAAGDQMLIRVAE 439

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+    +  D++ARL G+ F ++L +       A  A  +  ++  P ++   +I+V AS
Sbjct: 440 RLRAAARTDDLVARLGGDEFAVLLRALPAPAVAAHRAETLLAALHEPFDIEGMQISVEAS 499

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVE 716
            G A   ++      +L+ A++AMY AK  G      +    +    R+ +  +L  AV 
Sbjct: 500 GGIAIAPAAGGMVE-LLRRADVAMYQAKRAGQRVATYAPARDTADLGRLALGGELPRAVA 558

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           + E  + + PI+ L   E++  EAL +W HP  G I    F+   E   ++ A    +L+
Sbjct: 559 DQEFVVNFQPIVDLGTGEVIAAEALARWRHPTHGMIDPLRFLETVERSGLLPAFAEAILD 618

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +      +WRD     P  + +N++ + LLD      + A +      P R+ L  +E++
Sbjct: 619 QALIAASTWRDAGFDVP--VAVNVSPRSLLDARFPGAVLARLRAHDLPPDRLMLELTETL 676

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEK 894
            +   +    +L RLR  G+ L LDDFGT  S LS L  IP   +K + S +T   S+ +
Sbjct: 677 TLSQLDVVDQVLTRLRDSGVRLALDDFGTGYSSLSLLSRIPVHELKIDRSFVTAMESSAE 736

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             AI+RS + + +++   ++A+ +  +     L  +GC   Q    A P
Sbjct: 737 AAAIVRSTLDLGRSLNLAVVAEGVERDPQRLALWELGCVAGQGHLFARP 785


>gi|88797835|ref|ZP_01113423.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Reinekea sp. MED297]
 gi|88779512|gb|EAR10699.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Reinekea sp. MED297]
          Length = 780

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 99/451 (21%), Positives = 195/451 (43%), Gaps = 12/451 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI  +      I   A  D LT +PNRQ   D     +       + R   +++ I 
Sbjct: 334 MQADIQVR---EARITYQAQHDMLTELPNRQYLSDLFHQRIAQPPGAHHCRA--ILVKIA 388

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +  ++DV G  + D  L  +  R+ ++L   D + R++ +   +      +   ++   
Sbjct: 389 NFDNLSDVYGTQMLDRGLRQVASRLSQMLPDDDAVGRIATDELLLFNQGARD-DGLSQVI 447

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVE 693
             +   +  PI+    E  ++  +G             + + + +A+   +  G    V 
Sbjct: 448 DDILDLMTQPIHESNVEFRLSVRLGVLYCPDHAADFETVHRRSHIALSEGRAAGERWCVF 507

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              + S    ++ + E L  A+   +  L++ P   L  + +   EALI+W     G I 
Sbjct: 508 EPDMESRHLRKLQVTERLQSAISERQFSLLFQPQYDLQAQRVHSAEALIRWHDDVLGPIY 567

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE   MI  I  ++ +     +  W    +   + + IN++++D+L ++  + 
Sbjct: 568 PDEFIPLAESSGMITQITDWVFDESLAQLARWHRAGH--SLGVSINLSARDILKDDFIDR 625

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + A I +    P  + L  +ES V+   + +   L RL   G+SL +DDFGT  S L+ L
Sbjct: 626 VIARIDQGDVDPKWLMLEVTESAVVEELDHAVANLQRLYDAGVSLAIDDFGTGFSSLAQL 685

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K + S +           I+RS I MA ++  ++IA+ +  E  ++ L+ M 
Sbjct: 686 KVLPVHELKIDKSFVLNLSMDLDDQKIVRSTIEMAHHLGLSVIAEGVENEASMQLLSSMH 745

Query: 932 CDYIQDSHVASPLGFNSILKLLKE-RFPLVK 961
           C+ IQ   ++ P+  + I+  L + R P  +
Sbjct: 746 CNAIQGYFLSKPIASDDIMTWLSDFRMPQTE 776


>gi|126172299|ref|YP_001048448.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
 gi|125995504|gb|ABN59579.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Shewanella baltica OS155]
          Length = 816

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 120/597 (20%), Positives = 249/597 (41%), Gaps = 21/597 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ Q         + +     R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQASLQQVHERLSRAVKQLNDSELRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   + G  + W   +H +DRD     L  +V  +    +   R+R  +  + W++ 
Sbjct: 288 IGYAPDELAGVFQTWEARLHPDDRDIVLDALQEYVSGKSKEFESVHRLRHREGHYVWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G   R IGI  D++E  K+   I     Q ++TG   +P    F+ RL+ 
Sbjct: 348 RGMLVDWDPQGRPTRMIGIHMDVSESAKNHAAINELVDQ-SVTGRKMLP--DVFMARLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L           +++++++D+   +  +    + + +L  +  R+         + RL 
Sbjct: 405 FLTQ-GNSSGQWGSLLLVEVDRLGLVATLNSHEL-ERLLTQVAARLSSYFTENITVGRLE 462

Query: 614 GNRFGIILISENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              F ++         +A          +R+ IA P +       ++A++G     S + 
Sbjct: 463 SGDFVLLAKDLAIDASVAARRALALASELRQVIARPFHYGHHHFELSANVGICLLDSIET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYH 725
              + +++ AELA   AK  G      +             ++++L  A++   + L++ 
Sbjct: 523 LDPALVMRRAELATLSAKRPGQAGCAFYHAEMDLRQSRDEQLQQELQTALQQDSMTLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++     E+V  E L +W       I  +EF+ +AE+  MI  ++ ++  R+ + I + 
Sbjct: 583 PVMNAHS-ELVSAEVLTRWYRTDGEFIPPAEFVALAEQGGMIAELDFWVANRVCQFIQTS 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q    P  + +NI++      +  + + AL+ +   +P ++ +  +E+ ++  P+   
Sbjct: 642 HAQGWSLP-TLTLNISAFSFGQADFVDALIALVKEHGIAPHQLGIELNEAALLMQPQFVA 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
             + +L   GI + LD FG+  S LS L   P   VK + S +          ++++I  
Sbjct: 701 ERVSKLVDAGIGIVLDHFGSGSSALSCLANQPLVAVKLDMSCIDSLAAMPQR-VKALIVS 759

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+     ++AK +      +     GCD  Q    +  L     ++L+  R PL+++
Sbjct: 760 AQQFNLHVVAKGVESPQHYQAFVEFGCDGYQGYLFSRALNQADFIQLVCPR-PLLRS 815


>gi|58039030|ref|YP_190994.1| diguanylate cyclase [Gluconobacter oxydans 621H]
 gi|58001444|gb|AAW60338.1| Diguanylate cyclase [Gluconobacter oxydans 621H]
          Length = 592

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/558 (23%), Positives = 226/558 (40%), Gaps = 21/558 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  S  IV   D     ++       I G     + G     L     +DR  FR +  
Sbjct: 30  ALDCSA-IVAITDTRGRILSVNSRFEEISGYTRDELIGNDHRMLRS-GQHDRKFFREMYR 87

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS---- 525
           +           E   R  D   +W+   I P  + +G +  Y+ I  DIT +K++    
Sbjct: 88  TIASG--HVWHGEICNRRRDGSLYWVDTTIVPHISESGKVTSYVAIRFDITARKQAENHL 145

Query: 526 ---LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
               + +      D LT I NR  F   L   L  S+        + ++DID +K IND 
Sbjct: 146 KSSRQKLQHAVNTDFLTKISNRLHFSHTLRKTLRQSSA---GYICLALLDIDTFKTINDT 202

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD +L  +  ++         +AR+ G+ F I+L  +          + + + + 
Sbjct: 203 SGHDSGDRLLRKVAEKLQSFQNDSCFIARIGGDEFAILLTGDC-PALFEKILLEIHEQMR 261

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
                       T SIG+            +LK A+LA+Y AK  G N +  +   +   
Sbjct: 262 FSFRNRTMTHACTVSIGYVRVPLVDAREKALLKCADLALYAAKTSGRNRIREYHPVMEEK 321

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 ++  +   + N  + + Y PI  L     +  EAL+ WDHP+   +S   F  +
Sbjct: 322 LDHAARLRRRVQTGLRNQSITVFYQPIFSLSTPGNISFEALLHWDHPQHRVLSPQHFPEV 381

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  +   +N F+  ++ +D+   R+Q       I INI S D   ++    +  L  +
Sbjct: 382 FEDPRLTLTLNTFVTRQVMQDMRKLREQNIRFE-RIAINITSCDFEGSDFFRKVALLAGE 440

Query: 821 TLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                + + L  +E++    +  +    L  L   GI ++LDDFGT  + L++L  I FD
Sbjct: 441 MNIPLTSLALEITENIFSRPHHRQIEQELDTLHCQGIQISLDDFGTGFASLTHLKTITFD 500

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK N + + G    E   AI+R +I +  ++   ++A+ I     ++ L  M CD++Q 
Sbjct: 501 AVKINRAFVAGLERHETDAAIIRGVIDIVHSLGRKVVAEGIGNATQVRALLEMECDFVQG 560

Query: 938 SHVASPLGFNSILKLLKE 955
             +   +    I   L++
Sbjct: 561 DFLCEAVPVMDIPAALEK 578


>gi|51244483|ref|YP_064367.1| hypothetical protein DP0631 [Desulfotalea psychrophila LSv54]
 gi|50875520|emb|CAG35360.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 479

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/459 (23%), Positives = 211/459 (45%), Gaps = 18/459 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++ S E +      D+ T +PN+      L   +  +   +  R  V+ +D+  +KK
Sbjct: 24  IHKRQTSEEELNYKVNFDSTTRLPNKTMAYAILCEKIAEAQKTNQ-RLYVLSVDLANFKK 82

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF-GIILISENNSLKIADFAIAM 637
           +N  LG   G+ +L     RI         +ARL G+ F          S      A  +
Sbjct: 83  VNKGLGHDGGEHLLEIAAERIVRASGPNSTVARLRGDEFLVSNFEDSETSSLAESTAKNI 142

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +  P  + + +  + A IG + +      + ++++ A+LAMY AK +G N    +  
Sbjct: 143 LEELQKPFFIQQIDFYLGACIGVSLYPRDSSKADKLMRYADLAMYRAKEKGQNIFCFYSQ 202

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISS 754
           S     S + M+++ L  A+   EL L Y P I    + +IVG EAL++W++  + +I++
Sbjct: 203 SLSHIISRKQMLEQHLHKAISRDELTLYYQPFIKLGKELKIVGAEALLRWNNKTFEDITA 262

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG- 813
           +E + +AEE  +I  I  ++L++   DI S           I +N++++   +    +  
Sbjct: 263 TELIAVAEETGLIVPIGEWVLQKATADIASI---NPPRSFRIALNLSAQQFHNPNQLQTA 319

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   + ++   P +++L  +E+ ++    ++  LL  ++++GI L++DDFGT  S L YL
Sbjct: 320 ILTALRESGLQPDQLELEITENNLLNLGAKTIHLLQWIKQLGIRLSIDDFGTGYSSLHYL 379

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FD +K + S +      +    ++ +I  M+K +   +IA+ I  + + + L +  
Sbjct: 380 QKQNFDLLKIDKSFIKDIHLKKSNRVLVDAIFAMSKTLGIEVIAEGIESKAEEEFLRQQN 439

Query: 932 CDYIQDSHVASPLGFNSILKLLKE-------RFPLVKNT 963
               Q    + P+       LL +       RFP  K+ 
Sbjct: 440 YGLAQGFRYSRPVPLEPFKILLDQQKERGYVRFPSSKDA 478


>gi|85710375|ref|ZP_01041440.1| hypothetical protein NAP1_15858 [Erythrobacter sp. NAP1]
 gi|85689085|gb|EAQ29089.1| hypothetical protein NAP1_15858 [Erythrobacter sp. NAP1]
          Length = 509

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 94/449 (20%), Positives = 204/449 (45%), Gaps = 20/449 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            ++  +   +  D L+ +PNR++    L +      +  +    + +ID+D++K++ND  
Sbjct: 54  NNVHELEELSETDTLSKLPNRRALHGDLESF-----SKGDEEVAIALIDLDRFKQVNDHF 108

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A+GD ++      +  +        RL G+ F + +    +   +     ++ + +  
Sbjct: 109 GHAIGDRLIQECAAMLQNICGDEARCYRLGGDEFAVAMAGRVSGTILEGMCRSLLEQLQA 168

Query: 644 PINLLEREITVTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
           P+ + + +I+V ASIG +  T+ +   S EML+ +++AM  +K  G      F       
Sbjct: 169 PVPVGKYDISVGASIGLSRSTADRRLPSSEMLRRSDVAMSVSKRDGKMRCTWFNESFDQR 228

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE----EIVGLEALIQWDHPKWGNISSSE 756
           R     ++++L   +   E  + Y P++          IV +EAL++W+      +    
Sbjct: 229 REAVRELEDELRAGLTKGEYEVQYQPLVAADSGSAGPRIVAVEALLRWNREDGRKVGPHV 288

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  I L++L +   D   W+       I + +NI++  L + E    +  
Sbjct: 289 FIPVAEDSGIINPIGLWVLRKSMTDARRWK------DITLSVNISAAQLRNPEFPIKLGE 342

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T +   +++L  +E+ ++ +P  +   L  +RK G+ ++LDDFGT  + + +L   
Sbjct: 343 ILEDTGFPAEQLELEVTETCLVLDPVVAERSLDVIRKFGVRISLDDFGTGYASIGFLRQF 402

Query: 877 PFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            F+ +K + SL+   G  E   A++ S I +A+ ++  + A+ +        +   G D 
Sbjct: 403 RFEKLKLDRSLVVKAGEDEGSRAMMLSSIAVARALKMGVTAEGVETTEQADMVRLAGADQ 462

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKNT 963
           IQ       +  + I  L+  +     + 
Sbjct: 463 IQGWLYYKAMPASDIDTLIDTQVSATISA 491


>gi|59710701|ref|YP_203477.1| GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59478802|gb|AAW84589.1| GGDEF domain protein [Vibrio fischeri ES114]
          Length = 852

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 210/447 (46%), Gaps = 9/447 (2%)

Query: 508 DILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +    +   ND+T + + S + +      D+LT + +RQ  +++   +LD     +    
Sbjct: 405 ETTLLMNAFNDMTNKLQSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKEHYEQ--- 461

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISEN 625
            ++VI I+ ++ IND  GI  GD +L +++ R+          +AR+ G+ F +     +
Sbjct: 462 GLLVIGINNFRDINDSFGILEGDQLLKNISDRLQCSFAHDNIAIARVGGDEFALFFSKLD 521

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++  +A  M      P  +      ++ S G      S  + +  L+NA +A+  AK
Sbjct: 522 DVEQLKQYARDMEGCFMTPFRVASNNSLLSISTGLVYGDLSCDSMTLWLRNASIALGQAK 581

Query: 686 HRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  + +  ++     +  +  +L LA++N EL   Y PII +   + +G EALI+W
Sbjct: 582 KNNLNMSLYTPEMAEASLHKANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIRW 641

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASK 803
             P+ G +S  +F+ +AEE  MI  +   +L +   D +   DQ   P    + +N++  
Sbjct: 642 LSPQRGMVSPLDFIPLAEENGMIIPMGSQVLTQACLDTVERIDQGLWPADFHMHVNLSVC 701

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  N   + ++A++  T  +P  + L  +ES ++ +   +   + ++R +G+ + +DDF
Sbjct: 702 QLTQNNFLDELKAVLHNTSMAPENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDF 761

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+Y+  +PFD +K + S +   T +    +I  ++  M +  + T++A+ I  +
Sbjct: 762 GTGYSSLAYIHKLPFDVLKVDRSFIKDLTAENIDSSIAAAVCNMTQGFDITLVAEGIETQ 821

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNS 948
              K L  +   + Q    + P+    
Sbjct: 822 EQAKLLASLNYHHAQGFLYSRPIPLED 848


>gi|330966786|gb|EGH67046.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 649

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 217/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNANLMLANRDSLTGLPNRRYFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +L+ +  R+         ++RL G+ F +++  + ++  +  F   +   +  
Sbjct: 271 GHSVGDRLLMLVAERLTTAASDTVHVSRLGGDEFALVIKGDISNEALLMFGKHLCTLMHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSEIPIQIGATLGFATFPATADNAAQLYEYADYALYQGKNHNPGSTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 NADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L +  +  +SW       PI +  N+++ D    E  + +  +I  +
Sbjct: 451 ERIGMINELTAPLLTQALQRALSWPS-----PIRLSFNLSAHDCATWESVKRIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIGQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K   S +TG  +      I++S++ ++ ++    + + +  + ++  LT +GC  +Q + 
Sbjct: 566 KIARSFVTGVHDNPTSYKIVKSLVALSLDMSLDCVIEGVETQDELNMLTSLGCTMVQGNF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F+  L  ++
Sbjct: 626 YSPPITFDETLVWIE 640


>gi|91224953|ref|ZP_01260212.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91190199|gb|EAS76469.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 848

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 201/432 (46%), Gaps = 13/432 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + S + +      D+LT + +RQ  ++            D    ++ ++ I+K++ IND
Sbjct: 416 LRASFKALREQLVYDSLTRLYSRQGLVEICEN------QSDLCHGSLFLLGINKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD +LVS+  R+ +  +   +LAR  G+ F + L + +   KI      +++  
Sbjct: 470 SVGHHNGDQLLVSIAERLKQQFRDNALLARTGGDEFAVFLSNVDTETKIKQTERRLQQLF 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           + P  +    + +  S+G      ++      L+NA +A+ +AK      V  +     S
Sbjct: 530 STPFMVEGENVVMKISLGIVQTQPNETMPL-WLRNASIALSYAKQDSLTGVCHYSPELAS 588

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +   +   +EN E    Y PI+ L+   + G EAL +W H   G +S  +F+ 
Sbjct: 589 ASKFRTQMLTKIQTGIENREFIPHYQPIVDLVSGTVCGAEALARW-HSDSGMVSPLDFIP 647

Query: 760 IAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           IAEE  MIKAI   +L +  RD   +   +       + +NI+   L      + + +++
Sbjct: 648 IAEESGMIKAIGQQILLQACRDTYQAIESKQWPSDFQLHVNISVNQLSCPSFVDTVTSVL 707

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    S + L  +ES ++ +   +   + +LR++GI + +DDFGT  S L YL  +PF
Sbjct: 708 DITKLPASNLTLEITESRIIDSAPTTLENMTKLREMGIGIAIDDFGTGYSSLGYLHSLPF 767

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC+ +Q
Sbjct: 768 TCLKIDRTFINQLTQENLNSSVVAAVINITAGLKTNVVAEGVEDSNQAQLLRSLGCNQVQ 827

Query: 937 DSHVASPLGFNS 948
             + + P+    
Sbjct: 828 GFYYSRPMPLEE 839


>gi|218682723|ref|ZP_03530324.1| GGDEF/EAL domain-containing protein [Rhizobium etli CIAT 894]
          Length = 506

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 201/425 (47%), Gaps = 13/425 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LT +PNR+         +      +     V  ID+D +KK+ND+LG   GD 
Sbjct: 80  WIACHDTLTELPNRRFLDSICAQAMIDQRAHET--YAVFSIDLDGFKKVNDLLGHDHGDA 137

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL S+ +R+  LL   + + RL G+ F +++    NS  +      +   I  P      
Sbjct: 138 VLKSVAQRL-SLLFPRERVFRLGGDEFVVLVRRSGNSD-LVALGNRIVSVIGKPFTFNGV 195

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--K 708
              + AS+GFA +  +     +++++++ AMY AK +G N V+ F  S        I  +
Sbjct: 196 AADLGASVGFAVYPENGDDLRQVIRHSDCAMYVAKKQGRNLVKPFVASMQDEMTKRIRVE 255

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A++ +E++  Y P++ L   +I+G EAL +W       I  +EF+ +AEE  +I 
Sbjct: 256 ADLRSAIKKAEIFPYYQPLVDLKTNKIIGFEALARWKTASGEFIPPNEFIPVAEEAGLIV 315

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L R   D +SW +      + +  N++   L D  L   +  ++        R+
Sbjct: 316 DLTDQLLRRACTDALSWPN-----DLVLSFNLSPIQLSDRLLGLRILKILGDVGLPTHRV 370

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES ++ +   +R++L  L   G+ + LDDFGT  S LS L    FD +K + S +
Sbjct: 371 ELEVTESAIIQDAVTARIVLDDLVNAGVRIALDDFGTGYSSLSQLSSYRFDKIKIDRSFV 430

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +   + +K+  ++++II +   +  TI A+ I  E  ++ L  +GC   Q   +  P   
Sbjct: 431 SSFETNDKQDKVIKAIIALGAGLGVTITAEGIEEESQLQRLQDLGCHIGQGYLLGRPAPI 490

Query: 947 NSILK 951
             +  
Sbjct: 491 EELTA 495


>gi|327188457|gb|EGE55671.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 709

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 207/439 (47%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  +  L  A  D+L+G+ NRQ  L  L  + D +++       + ++D+D +K +ND
Sbjct: 283 LRQLAQAALYEAGHDSLSGLLNRQGLLSLLEELDDTASSPPR----LYLVDLDGFKAVND 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  +++ +          ARL G+ F ++ +      ++      +    
Sbjct: 339 AWGHAVGDDLIRLVSKALMVCHPEVVAAARLGGDEFALVHVGPATCEEMERA---ILALF 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           A P  +  R I V ASIG A+     I   E+L+ A++A+Y AK  G      +      
Sbjct: 396 AEPFKIDGRTIEVGASIGAATRDGD-IEPLELLRRADMALYRAKANGRGQAIEYDPELDR 454

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            R     ++  L  A+    +  V+ P++      + GLEAL +W  P  GN+S   F+ 
Sbjct: 455 ERQQVAELEALLKTAIGTGAIEAVFQPLVSASTGMVTGLEALARWRTPA-GNVSPEVFIP 513

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+ + ML        +W      P + + +N++   L + E    + +++ 
Sbjct: 514 LAERCGLIDALGVHMLRTSIAHAKTW------PDLALSVNVSPVQLCNPEFAAEVISVLQ 567

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  + P R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L    FD
Sbjct: 568 ELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFD 627

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++   E  K   +LR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 628 RMKIDRSLVSALDEGAKGADVLRATISLATALQIPVTAEGIETSRQAAILRDAGCDQLQG 687

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+  + I   L+E 
Sbjct: 688 YLIGKPMSAHDIAGKLQEE 706


>gi|222080979|ref|YP_002540342.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
 gi|221725658|gb|ACM28747.1| sensory box/GGDEF family protein [Agrobacterium radiobacter K84]
          Length = 635

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 202/435 (46%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D+LT +PNR++F   LT  +  +   + LR    +ID+D +K +ND+ 
Sbjct: 199 ALSNENSRLANLDSLTDLPNRRAFFSHLTRAVCEAQA-EGLRLAAGIIDLDGFKPVNDLY 257

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  + +R+  L      LARL G+ F +I+   ++  ++      +  ++  
Sbjct: 258 GHGAGDKLLYEVGQRLARLCSGNVYLARLGGDEFALIVSGLSDDTELMALGDNLCLTLRT 317

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L E  + ++ SIGFA +        ++ + A+ A+YH K     +   F        
Sbjct: 318 PFLLTEAAVQISGSIGFAVYPEMAANVEDLFERADYALYHGKRTNRGNAVLFSSDHDAEI 377

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    I++ L +A    EL +++ PI+ +   E +G EAL +W  P  G +S ++F+ +A
Sbjct: 378 RRDARIEQALQMANLREELSVMFQPIVDVRSHETIGFEALARWTSPIIGKVSPAQFIPVA 437

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  +   +LE+       W        I +  N++++DL   E    + A+I  +
Sbjct: 438 ERAGFINRVTRPLLEKALAAAADWP-----MGIRLSFNLSAQDLTSPEGLLHLIAIIHAS 492

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P R+ L  +E+    +  + +  +  L+ +G  ++LDDFGT  S LS L  +P   +
Sbjct: 493 GFDPRRLDLEITETAFTADFGQIQSAITTLKALGCGISLDDFGTGYSSLSRLHSLPLTKI 552

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T   EK     I++S++ + +++    + + +    ++  L  +G   +Q   
Sbjct: 553 KIDRSFVTDLHEKPASYKIVKSLLALGRDMGLDCVIEGVETREEMDALKELGGLIVQGYF 612

Query: 940 VASPLGFNSILKLLK 954
            + P+    I   LK
Sbjct: 613 YSPPIQETDIRDFLK 627


>gi|90426167|ref|YP_534537.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90108181|gb|ABD90218.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisB18]
          Length = 603

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/551 (22%), Positives = 228/551 (41%), Gaps = 18/551 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465
               +      V   D     +      A   GL++  +    R W        D    R
Sbjct: 33  LRDIMQALPAAVTLQDAQGRFLLANDAAAAQFGLSAAQL----RAWSPSAALPTDALEQR 88

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   +      L  E  +   D     +        +  G  L  +  + DIT+QK+ 
Sbjct: 89  RSLAIDLLNSGESLVCEENI--GDGYGLRIFRTAHRRLDIAGAGL-LLSSSVDITDQKQV 145

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A+ D LTG+P R     R   +L     D +    +  +DID +K IND  G 
Sbjct: 146 EQALFQRAYFDELTGLPIRGVIETRANALL---QNDPDAGFALAFLDIDNFKHINDYYGH 202

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD +L+ + +R+G  L+  D L+R+SG+ F ++L    +  ++ D    +++ +  P 
Sbjct: 203 AVGDALLIGVAKRLGLQLRASDTLSRISGDEFLMLLTPVQSQSEVIDDIEFLQQRLRAPF 262

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +   EI  +ASIG + +     +   + +NA++AMY  K+        F V+  R    
Sbjct: 263 YIDGSEIFASASIGISLYPEHGRSFETLRQNADIAMYQIKNATKGGAAMFDVAMEREALA 322

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +++ L LA+ +      + P + +   E+ G+EAL++         +   F+ +A E
Sbjct: 323 RTKVEQALRLAILDKRFCCAFQPKVDIRSREVKGIEALVRLRDDNGVIQAPGTFVDLAVE 382

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L +I  +   +L  I + I    D      + I IN+A+K   +          +  T  
Sbjct: 383 LGLIDELTHLVLSEIMKSIDLINDTFGA-GVSISINVAAKQAGNPTFMRSFSEALEATGC 441

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P R  +  +E   +        +L  LR++G+ +++DDFG   S LS L  I  D +K 
Sbjct: 442 -PERFIVEVTEDAFVAKSHFQTEILPMLRRLGVGISIDDFGIGYSSLSALADITADEIKI 500

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHV 940
           + S +T      +   IL++I  +++ +  T+IA+ +    ++  L       Y Q  + 
Sbjct: 501 DRSFITDIHKRPRSQGILKAIESLSEALGMTVIAEGLETFEELAYLQAATRIRYAQGYYF 560

Query: 941 ASPLGFNSILK 951
           + P+    +  
Sbjct: 561 SRPIFLEELKA 571


>gi|315635774|ref|ZP_07891037.1| ggdef family protein [Arcobacter butzleri JV22]
 gi|315480071|gb|EFU70741.1| ggdef family protein [Arcobacter butzleri JV22]
          Length = 538

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 218/551 (39%), Gaps = 40/551 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLASGSMHGPIRNWL-PYI---HINDR 461
             L    S D++W  D+    +     I   +L      + G   N+    +   H  + 
Sbjct: 11  LKLISEYSPDMLWIKDLKGRYLYANNAICKGLLIATPDEVFGKDDNFFVKRVREKHKENP 70

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAAD---NQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +       S       +     R         +  ++ +   P  + NG ++  IG A D
Sbjct: 71  EYHTFSSCSDSDEETLKAMKSLRFIEKGNIKGKLKYLEVDKAPFFDENGKLVGVIGTARD 130

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE+    E     A+ D LT +PNRQ  +  +         + N     +V +ID +K+
Sbjct: 131 ITEKILLKEKNEKLAYYDQLTTLPNRQKIILDI---------NTNFPTACIVFNIDDFKE 181

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G    D +L  +  R  +      I+ R+ G+ F I+     +  ++   A  + 
Sbjct: 182 INDFFGTENADKILQDIANRFLDYKY---IVYRIDGDEFAILFYENLSIDELKSQAQKIL 238

Query: 639 KSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVES 694
                 P  + ++ I++  SIG A    +      +L   ++A+ +AK+   +   + ES
Sbjct: 239 TLFDEEPFYVEDQTISIGFSIGIAKAKDN------LLTKVDIAVNNAKNSSSDISVYEES 292

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +       + +   +  A+    +   Y P+I +   EI   E L++        I  
Sbjct: 293 ENIEKKYKQNLEMATSIKEALLEDRIVCHYQPLIDIETGEIYSFETLVRMIDKDGSIIPP 352

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+  ++++ +  +I   +++          +          IN+   D+ D E  + +
Sbjct: 353 IKFLDFSKKVKLYSSITRKVIKEACETFKHRNENF-------SINLNIADIKDKETVKEI 405

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              I++T  + S++     ES  + N +     + +++ +G  + +DDFGT  S   +L 
Sbjct: 406 IKNITETD-TASKVTFEILESEGIENYDEVISFINQIKALGAKIAIDDFGTGYSNFEHLL 464

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  + +K +GSL+      EK   I+ +I+  A+ I    +A+ +  +  ++ +  +G 
Sbjct: 465 RLDVNYIKIDGSLIKNIASDEKHRIIVETIVSFARRIGIKTVAEFVADKQILEIIKEIGV 524

Query: 933 DYIQDSHVASP 943
              Q  ++  P
Sbjct: 525 SCAQGYYIGKP 535


>gi|91795017|ref|YP_564668.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91717019|gb|ABE56945.1| GGDEF domain [Shewanella denitrificans OS217]
          Length = 800

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/579 (20%), Positives = 264/579 (45%), Gaps = 13/579 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +     R   +V GS + +WDW+I    +  +     ILG  +G +      
Sbjct: 223 RLKRATKRLNDAERRWLFSVEGSRNGIWDWNIATGAIFVSDRWKEILGFDAGDLTNDYLA 282

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510
           W   +H +++      L +++ +++   +   R++     + W++ + + +  +     +
Sbjct: 283 WESRLHPDEKSQVLNTLQNYINHQKEDYESVHRLKHKQGHYIWVLDKGKIVEWDEQSRPI 342

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R IG   D++   +     +     + LT + NR    + L   L +          +++
Sbjct: 343 RIIGTITDVSGDVQHHRVAIDKQSHNGLTDLINRDGLANALFD-LQVQCRQSETSAALIL 401

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII-----LISEN 625
           + +D +  IND LG  +GD +L+ +  R+        ++ARL  + F ++       +E 
Sbjct: 402 VSLDNFSVINDALGRQLGDRLLMQIAARLTSTFSAVGLIARLGTDEFVMLAAHLGPDAEQ 461

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHA 684
            + +    A  +++ I+    + E+ ++++A +G   +     I    +L  A+ A+ HA
Sbjct: 462 ANRRALALASEVKQLISRGFTVSEQHLSISAKVGVVVFDGIDSIEPHTLLARADTALSHA 521

Query: 685 KHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                G  +    +   +     +++ L +A++  +L L + P++ + D  +  +E LI+
Sbjct: 522 NDAAEGCILYQASMDKNQLQPAKLQQALAVAIDAGQLSLAFQPVVDV-DGNLGSIEVLIR 580

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W H ++G I+ ++ +  AE    I  + L++ E++   I++   Q    PIF  INI+++
Sbjct: 581 WYHVEYGFIAPTKIIATAELSEDIVKLELWVFEQVCSLILALEHQRVSSPIF-SINISAR 639

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                   + ++  + +     + I+L  +E V   NP+ +R L+  L+++G  + LD+F
Sbjct: 640 SFHQEGFIQQLKQRMRQFPIKGTPIQLELAEEVFNVNPQAARKLVRELQELGFLIALDNF 699

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G     L YL  + F  VK     + G T+   +  +L +++ MA+++   ++AK I  +
Sbjct: 700 GLSMGTLQYLQGVSFSQVKLAPRYLDGITDSAQSTKLLAALVNMARDLGYAVVAKHIENK 759

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
             +K  T + C + Q   ++ PL    IL+L+K +  L 
Sbjct: 760 ELLKITTEIHCTWFQGYIISRPLVEKDILQLIKSKLSLS 798


>gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspirillum seropedicae SmR1]
 gi|300072145|gb|ADJ61544.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 726

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/639 (20%), Positives = 251/639 (39%), Gaps = 31/639 (4%)

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL---VGGLVLIVILIGFTVIQ 388
           K +   VLL  A + + I  + ++  I   +       A          I +     + Q
Sbjct: 95  KSFYALVLLAQAIVSLLIIGLLVYRRILGPIGKLTQATARIQRGSFEQGIDLPQQDEIGQ 154

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                      + +  + Q+  +      V         V        +L      + G 
Sbjct: 155 LARHMEAMQASLKTLFDEQAAILGNIPAGVLFVR-KGKIVFGNEAAQALLARDDRRLVGV 213

Query: 449 IRNWLPYIHINDRDNFRTIL--DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               L        ++ +  +     V    G       +R A        +    +    
Sbjct: 214 AAEDLF------VESVQQAVYVARAVARSSGAAGEIVLLRNASGASFPAELHTSLI--DP 265

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 I +  D++ + ++   I   AF D +T +PN++ F+DRL   LD   T  +   
Sbjct: 266 ARPGEQIWVVIDVSARLEAENRIDQLAFYDPVTQLPNKKLFMDRLRRGLDRRRTSGHA-G 324

Query: 567 TVMVIDIDKYKKINDVLGIAVGDD---VLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            V V++I +        G    D+   +L+   RR    +     +AR+ G +F +    
Sbjct: 325 AVFVMEIHRADL---SYGSVKADEMEQLLIECARRFSSCITAEQTVARMEGEKFALGTEI 381

Query: 624 ENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            +N L          A  +  +   P +L       + ++G       +  +SE++  AE
Sbjct: 382 RSNELAECIRYCEALAQRILDAFTDPQSLSAARFPCSVNLGINIVRDEQYGASELVMQAE 441

Query: 679 LAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LAM  ++  G N    F  +     + R  ++ +L  AV   +  + Y P +     ++V
Sbjct: 442 LAMVQSRAAGRNVFRFFDPAMQALANQRSQLEAELRQAVARRQFIVYYQPQVTYE-GDVV 500

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G +S + F+ +AE++ ++  I   +L RI  D+ +W+ +     + +
Sbjct: 501 GAEALVRWQHPIRGIVSPTTFISLAEDMGLMDEIGRQVLHRICTDLENWQREGLARDLVV 560

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++++   +      + ++ +       +K+  +ES+++ + E     +  LR   +
Sbjct: 561 AINVSAQEFKVDNFVYRFREIMREHHVPSHSVKVELTESMMVDHIEDVITKMQALRSNEV 620

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTII 914
           S++LDDFGT  S LSYLG  P D +K + + +          +I+RSII + +++  +II
Sbjct: 621 SISLDDFGTGYSSLSYLGRFPIDQIKIDQTFVREMQNDAAMASIIRSIIMLGQSLNLSII 680

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  E     L   GC   Q    + P+       LL
Sbjct: 681 AEGVETEQQRDFLHAQGCLLYQGYWYSKPIPGEQFADLL 719


>gi|288940803|ref|YP_003443043.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
 gi|288896175|gb|ADC62011.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
          Length = 745

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 210/519 (40%), Gaps = 29/519 (5%)

Query: 451 NWLPYIH------INDRDNFRTILDSFVGYRRGRLQYEFRVRAA----DNQFHWMIIRIR 500
           ++   IH           + R  L   +  +R R      +            ++ +   
Sbjct: 233 HYREMIHRPLAELPE--ASVREALRQCLLEKRHRFDRTVCLYFNVSETQGMAAYLAMTGE 290

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P       +  +    +   E       +   A+ D L+G+PNR  F+  +         
Sbjct: 291 PSQMDRHLLEVFCANISVGFENVLLHNRLFRLAYYDQLSGLPNRNRFIQLVEE------K 344

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             +    + ++D+D +  I   L    GD+VL ++  R+ +      +LAR++G+ FG++
Sbjct: 345 GRDPDMALALLDLDDFADIATTLDHHFGDEVLRAVAERLEQTFGSQVMLARVAGDTFGLL 404

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +      A     +++  + P+ + +  I ++A+    +         ++LK+A +A
Sbjct: 405 GPRD------AVTPERIQQVFSEPLTVRDETIRLSATSSLITLNGQPAKDRDLLKDAGIA 458

Query: 681 MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +   K  G      F  +      +R+ +   L  A    +L LV+ P I L    ++G 
Sbjct: 459 LKQGKRLGRGKANYFSEALGRAARERMQLLSSLRAAFSAEQLSLVFQPQIELASGPVIGA 518

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+      +   +F+ +AE+  +I  +  ++L    R +    ++       + +
Sbjct: 519 EALLRWEIEPGRWVPPDQFIPLAEQSGLIVPLGEWVLRTACRQLHRLTER-GHTGFRMAV 577

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++     +      ++ +++ +  + S+I+L  +ESV M + +     L  +R+ G+++
Sbjct: 578 NVSHAQFREPGFVSMLECVLADSRVAASQIELELTESVAMDHIDDINTKLADIRRRGVTI 637

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LS L  +  D +K + S +        +  I + II +       +IA+
Sbjct: 638 AIDDFGTGYSSLSVLRQLNIDRLKIDRSFVKELDGTHTKAGIAQLIIALGHQCNLALIAE 697

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   +  + L  MGC   Q    A P+    +   +  
Sbjct: 698 GVENAVQRRSLLAMGCLEAQGFLFARPMPIEQLEDWMAA 736


>gi|301645178|ref|ZP_07245134.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|301076538|gb|EFK91344.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 419

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/425 (25%), Positives = 200/425 (47%), Gaps = 13/425 (3%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR +  + L  ++D +     + P V +I +D  + + D LG A  D  L+ +  R
Sbjct: 2   TGLPNRNNLHNYLDDLVDKA-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNR 56

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
             E LK    L R+ G +F  ++  EN+   I   A  +R  ++ PI + ++   +T SI
Sbjct: 57  FREKLKPDQYLCRIEGTQFV-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSI 115

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVE 716
           G +           +L  A  AM + +  GGN  + F  +     +  +     L  A+ 
Sbjct: 116 GISY--DLGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAIS 173

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N++L LVY P I     E+ G+EAL +W  P  G++  S F+ +AEE+  I+ I  +++ 
Sbjct: 174 NNQLKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIA 233

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  WR Q    P  + +N+++     N+L   +   +        ++ +  +ES+
Sbjct: 234 EACRQLAEWRSQNIHIPA-LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESM 292

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           +M +       +  LR +G+ L++DDFGT  S LS L  +P   +K + S +     ++ 
Sbjct: 293 MMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKR 352

Query: 897 --AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             A+L +I  + +++  T++A+ +  +   + L ++ C  IQ    + PL    I   + 
Sbjct: 353 ILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMS 412

Query: 955 ERFPL 959
              PL
Sbjct: 413 SVLPL 417


>gi|296448082|ref|ZP_06889984.1| diguanylate cyclase/phosphodiesterase [Methylosinus trichosporium
           OB3b]
 gi|296254396|gb|EFH01521.1| diguanylate cyclase/phosphodiesterase [Methylosinus trichosporium
           OB3b]
          Length = 595

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/548 (19%), Positives = 224/548 (40%), Gaps = 22/548 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-NFRT 466
           ++ +   G +++DWDI  DR+    ++A  LG  +       R +   +        +  
Sbjct: 37  AIVLPSIGAVLYDWDIATDRLLWGDNLAETLGAVARGELSTGRAYGERLGAESAASRYEA 96

Query: 467 ILDSFV--GYRRGRLQYEFRV----RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +++S           +  + +            W+    R  +  +G   R  G+   IT
Sbjct: 97  VMNSTATDEGEGAPFRAVYSLAPARETGGGPLIWVEDCGRWFAGRDGRPHRVHGLVRVIT 156

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K+    +   A  D LTG   R    D    +L            V+++ I+    +N
Sbjct: 157 ERKELEGEMKRRAQIDALTGTVTRVQLADHAQRLLGQPEKARKP-FAVLLVAIENLFALN 215

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   GD+++V L  R+   L+  D+++R +GN+F ++L +   + +     + + + 
Sbjct: 216 RTYGYDAGDEIIVRLAARLRANLRVNDLVSRYAGNKFAVLLDNC-EAEQAKATGMRLIEV 274

Query: 641 IAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           I+  P       I  TA +G         T   + ++AE A+  A+ R G    ++  S 
Sbjct: 275 ISQAPFETQVGAIPATARMGAVVAPRDGRTPEILFQHAEEALDAARQRNGARFVAYASSL 334

Query: 700 FRS----DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            R       + + + +  A+    + L + PI+      I   EAL++        +   
Sbjct: 335 DRDIGRLHALHVADSVVSALNERRVELAFQPIVSAKTGAIAFYEALLRVRLADGSIVCPG 394

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           + + +AE+  +++ ++  +LE     +         P + + +N +   L D E    + 
Sbjct: 395 DILPVAEKSGLVRLLDQRVLELALARLAE------EPDLRVSVNASIATLNDPEWPAWLA 448

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +  +       R+ +  +ES ++ + + +R L+   + +GI L +DDFG   +    L  
Sbjct: 449 SATNVYPGVAKRLTIEMTESTMIEDFDTTRRLIAACKSLGIKLAMDDFGAGHTSFRNLRQ 508

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           + FD VK +G+ +   ++       +R++  +A+++   I+A+ +  E     L   G D
Sbjct: 509 LDFDLVKIDGAFVRNISKSADDRFFVRTLTDLARHLGLEIVAEWVEDEATAALLREWGVD 568

Query: 934 YIQDSHVA 941
           Y Q S+  
Sbjct: 569 YFQGSYFG 576


>gi|152990949|ref|YP_001356671.1| hypothetical protein NIS_1205 [Nitratiruptor sp. SB155-2]
 gi|151422810|dbj|BAF70314.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 450

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 223/446 (50%), Gaps = 22/446 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            LR + I  DI+E  +  + I   +  D LTG+ NR+ FL+ +  +    +T  +L   +
Sbjct: 13  PLRMVAIF-DISEIVEKDKMIDFLSNYDFLTGLYNRKYFLEFIQEVFPYYSTH-SLYGAL 70

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-SENNS 627
             IDID +++IN++ G  VGD +L  + +R+   ++   ++AR+ G+ F +     E + 
Sbjct: 71  FFIDIDNFREINEIRGYEVGDLLLKEIAKRLKTTVRKESLIARVGGDEFLLFCDLKEKDR 130

Query: 628 LKIADF----AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            K+  F    A  ++K +     + ++EI +T SIG A    + +  + +L+ A++A+Y+
Sbjct: 131 EKVRIFSSSFAGRLKKELEKLYVIDDQEINITISIGIALIEPN-LDIALLLRQADIALYN 189

Query: 684 AKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE--IVGLE 739
           AK    + +  F    F+   ++  IKE +   ++N + +L +   +RL ++   +VG E
Sbjct: 190 AKENRKSRIIFFNSKYFKTLKEKSKIKEKIKEGLKNDQFFLAFQKKVRLENQTPVVVGYE 249

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+      I   +F+ IAEE  +I  I  ++L+++   +  + +        I +N
Sbjct: 250 ALVRWEL-NGQIIPPDKFIPIAEENGLIIEIGSYILQKVCSYLQKYNE-------KISVN 301

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I+ K   D+   + +  +I+K   +P+ +    +E++++ N + +   + +L+ IGIS +
Sbjct: 302 ISPKQFEDDLFVKRVINIINKYNINPNNLIFEITENILLENIDEAISKIKQLKNIGISFS 361

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S   YL  +P   +K +   +          AI+ +I  +    +  ++A+ 
Sbjct: 362 IDDFGTGFSSFEYLKTLPLAELKIDKIFVKNVVDNSNDYAIVEAITKIGHIFDLKVVAEG 421

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASP 943
           +     ++ L  +G D  Q  +   P
Sbjct: 422 VETREQLQILEEIGVDIFQGFYFGRP 447


>gi|86356223|ref|YP_468115.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86280325|gb|ABC89388.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 563

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 206/448 (45%), Gaps = 19/448 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K+  E            A QD LTG+ NR+SF   L   L     + +
Sbjct: 103 NFVGLVQLTEELKQKQEEAEELNLVNSRNALQDQLTGLANRRSFFLSLEERL---QKNPS 159

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + +ID+D +K +NDV G A GD VL    RR   L+    I++RL G+ FGII   
Sbjct: 160 TPPVIGIIDLDGFKPVNDVFGHAAGDLVLKETARRFTVLVGEAGIVSRLGGDEFGIIFPC 219

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+  ++  P  + +  + V  S G     +   T+ ++ + A+ A+Y 
Sbjct: 220 SMTRQAIADLGQALCATVRNPYEIPDGSVRVFGSCGIVYPEAGSYTAEDLYEKADFALYQ 279

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L      SE+ L Y PI+ L    +V  EAL
Sbjct: 280 VKSKRSSGVEFFSADHEKILTQRHLIELELQANDFASEMKLDYQPIVELQSGRVVAYEAL 339

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS S F+  A+   +I  +   +  +    +           + +  N++
Sbjct: 340 ARWDSARFGRISPSAFIPAADRTAVIGRMTRILFAQALEALAIMPRH-----LRLSFNLS 394

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    + A+I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 395 ARDICDHETSMALLAMITRSGVDPRRIEFEITETALLSDFDTADRVITMLRAAGISIALD 454

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K +   +           I RS+  + +N+    +A+ + 
Sbjct: 455 DFGTGFSSLSHIHRLAFDKLKIDKGFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVE 514

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            E   + L  +G    Q  + + PL   
Sbjct: 515 SEAIAEGLKAIGVRLAQGYYFSRPLPLE 542


>gi|261856276|ref|YP_003263559.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
 gi|261836745|gb|ACX96512.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halothiobacillus neapolitanus c2]
          Length = 868

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/596 (21%), Positives = 234/596 (39%), Gaps = 23/596 (3%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS-----GDIVWDW 421
           +  A+      ++ L         +   +  + +      + L +  S      + V   
Sbjct: 247 LARAVQHFRTTLITLSDSREQLKAILKKHDQETLSRRRAEKQLTLAASVFENVQEAVLLT 306

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           DI        P    +L      +           H  D      +    +    G    
Sbjct: 307 DISGHVTRANPVALEMLHSTEKQLASKPLLEFLLNH--DATVVEPLWRQVLDQ--GYWSG 362

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E       +     +I I+ M  +       I + ND TE +     +   A QD +TG+
Sbjct: 363 EVEFTPEKSSTITALISIKLMGEAREGRGHVIFVLNDHTEIRAREAKMRFLAEQDTVTGL 422

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR  F+ +    +       N   ++++I ID ++ IND LG   GD VLV + R +  
Sbjct: 423 YNRHYFITQGEKRIA---QHPNSSFSIILIGIDNFRSINDALGHHDGDQVLVEIGRALAA 479

Query: 602 LLKFPDILARLSGNRFGIILISENN---SLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           LL    +LAR+ G+ F      ++      ++  FA     S   P+++   +IT+  S 
Sbjct: 480 LLPASAVLARVDGDEFAFYWTPKDEQNHEEELRAFAEHALASARQPLHVNSYQITLKLSA 539

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G +++ +      +++K  ++A+  AK  GG+ +      +    R    +++ L  A+ 
Sbjct: 540 GTSTYPNDGDNIEDLIKTNDIALSMAKSEGGDRLYMHGAQAQNLARRRFMLQQALDKALG 599

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L Y P + L + +I G E L++W H     +S  EF+ +AEE   I  I  +   
Sbjct: 600 KRELRLSYQPQVSLANGQINGFEVLMRWRH-GGEWVSPEEFIPLAEETDTIVRITEWAFT 658

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                I  W+ Q       + +N+  + LL +++ E +  +  K     S I L  +ES 
Sbjct: 659 EACNRIREWQRQT-EETFNLSLNLPPRLLLTDKIDERLVNIAKKAGLPLSSITLEITESS 717

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
              +P      L RL   G ++ +DDFGT  S L+YL  +P   +K +   +   +E   
Sbjct: 718 FGNDPSLMSDQLHRLAMQGFTIAIDDFGTGYSSLAYLSTLPISKIKIDKKFVDLISEDAE 777

Query: 897 A--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY-IQDSHVASPLGFNSI 949
           +  +L+SI  MA+++E  I+ + +     +  L +      IQ      P      
Sbjct: 778 SCKLLKSIFAMAESLELDIVVEGVETADQLVLLKKFDVRVDIQGFVF-EPAQNEDF 832


>gi|148978556|ref|ZP_01815008.1| c-di-GMP phosphodiesterase A-related protein [Vibrionales bacterium
           SWAT-3]
 gi|145962345|gb|EDK27626.1| c-di-GMP phosphodiesterase A-related protein [Vibrionales bacterium
           SWAT-3]
          Length = 570

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/448 (24%), Positives = 194/448 (43%), Gaps = 16/448 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   + +     A  D LT IPNR  F   +   L   A D      V+ +D+D +K +N
Sbjct: 119 ELDNTYQQTKVLAENDQLTQIPNRLQFQSFVQQSL--LAPDSKNNTWVLYLDLDNFKFVN 176

Query: 581 DVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLKIA-D 632
           D  G  +GD +LVS   RI  L            + ARLSG+ F I + +  N+  IA  
Sbjct: 177 DKYGHQIGDSILVSFAERITALCDFFQQSDNAHCMPARLSGDEFVIYINAPANADNIAHQ 236

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           F+  +   +            +T SIG A++ +   T  ++L NA+ AMY AKH G N  
Sbjct: 237 FSEKLLDPLQKGFITDSGSFPITVSIGIATYPNDGHTIEKLLSNADTAMYQAKHAGKNQF 296

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             + +   ++ +    I+  L     + E  LVY P +      ++G+E L++W+  + G
Sbjct: 297 ADYSLDLDKTIQRQANIERALRDQNFDEEFKLVYMPYMDAAGHHVIGVEVLLRWESEQLG 356

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            ++ +EF+ IAE+  + + ++ +++E         + Q     I + IN++S  +    L
Sbjct: 357 TVTPNEFIPIAEQTGLFELVDRWVIENAFASFHQLQAQF-DHSIQLSINLSSAGIETTHL 415

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++         PS I    +E+    N      LL  L ++G  L +DDFG+  + +
Sbjct: 416 ADFIEQHAKINGIPPSLIDFEITET-FYSNSHGF-PLLNELARMGYRLAIDDFGSGYTSI 473

Query: 871 SYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           + L   P   +K +   +          I++ +I +      T+ A+ I  +   + L  
Sbjct: 474 TQLVEYPTQKIKLDKGFLEALIETNNQNIVKPVIGLCHAQGKTVTAEGIETKEMHQWLQD 533

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
             CD +Q  +   P+  N +    +E  
Sbjct: 534 AHCDMLQGFYFGKPMPLNELSDWYQEHQ 561


>gi|87121805|ref|ZP_01077691.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Marinomonas sp. MED121]
 gi|86162834|gb|EAQ64113.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Marinomonas sp. MED121]
          Length = 779

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 217/443 (48%), Gaps = 19/443 (4%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+   I+++    E +   A  DNLTG+ NR +  + L+  L            V++I+I
Sbjct: 333 GMQKRISKR---EEELSFQASHDNLTGLKNRNAVENFLSLNLKA------KEGGVLLINI 383

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             +K IN+++G   GD +L    +RI +L+   D +ARL+G+ F I+  S+ N + +A+ 
Sbjct: 384 RHFKDINNMMGFENGDILLCEFAQRISKLITNQDEVARLAGDEFLIVFKSQFNEITLAN- 442

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHR-GGNH 691
              + +S+    ++   ++ +   +G   +     +T + +++  +++   AK    G  
Sbjct: 443 ---IHQSLQGEFDISGSKVCLQVCMGALFFANQDDMTVNGIMRRVDISADEAKQSENGIA 499

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +            + I  DL  ++ + +L++VY P + + D      EALI+W HP  G 
Sbjct: 500 IYEQGQDESHRRTLSIIRDLPESLASHQLFIVYQPKVNIQDRRCHAAEALIRWIHPSLGF 559

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS +EF+ + E    I+ +  +++E + +   +W  +     I + IN+++ DL+D  L 
Sbjct: 560 ISPAEFIPLLERSGNIQLVTKWVIEEVCKQQSNWLRE--DMQIQVAINLSALDLIDLSLP 617

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +++++ K   + S++    +ES VM + +    +L  L+K+G  L++DDFGT  S L+
Sbjct: 618 TFIKSMLEKYAINASQLAFEVTESSVMEDTKTVIHVLNALKKMGFKLSIDDFGTGQSSLA 677

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D VK + S +           I+ + I ++ +   ++ A+ +     +  L  
Sbjct: 678 YLRDLPVDEVKIDRSFVHDIDTNESNALIVNTTIQLSHSFGFSVTAEGMENIGGLSILED 737

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
            GC+ IQ  + + PL  +  L  
Sbjct: 738 YGCETIQGYYFSKPLKSDEFLNW 760


>gi|90021008|ref|YP_526835.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950608|gb|ABD80623.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 746

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 92/434 (21%), Positives = 202/434 (46%), Gaps = 13/434 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            LE +  +A+ D L G+PNR + + ++  +++    D      + ++DID + ++N  LG
Sbjct: 313 LLERLSSHAYFDILVGLPNRTALIQKIDELVED---DSLPELYLALVDIDNFAELNAALG 369

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               D++L  +  R+         +AR++ + F ++   ++           + +    P
Sbjct: 370 KDYCDELLREIGLRLLNNFPVTCTVARIAADVFAVLGPKDHVKPMA------ISEVFNKP 423

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
             + + +  ++ + G    T       + +K   + +  AK   RG   + + ++    +
Sbjct: 424 FKVRDNDQVLSVTSGIVPLTEMSEGGGQAIKEGSIVLKSAKAIRRGEVVMFNRKMVEKAT 483

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             V +  +L  A ++ +LYL Y P   +   ++VGLEAL++W++     +    F+ +AE
Sbjct: 484 QHVEMLRELREAFDSGKLYLAYQPKFDIKTLDVVGLEALLRWENKHGVMVPPQRFIPLAE 543

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  +++E    ++   R       + + +N +   L   E+ + ++ LI +  
Sbjct: 544 KSGLIVRMGEWVMENAIAELHKVRSSGWN-DLKMGVNFSVAQLRHPEILDALRELIDRVQ 602

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+ + L  +E++ M + + +  +L R++ IG  L++DDFGT  S LSYL  +PFD +K
Sbjct: 603 VDPNLVDLEITETIAMDDVKGNMEVLTRIKDIGFELSVDDFGTGFSSLSYLQKMPFDNLK 662

Query: 883 FNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +  S       I+  I+ + + +   +IA+ +     +  L  +GC  +Q   +A
Sbjct: 663 VDQSFVQTSDTPSGRKIVEMIVNLGQTLGMNVIAEGVETREQLDLLRELGCQQVQGYLLA 722

Query: 942 SPLGFNSILKLLKE 955
            P+  + +   L  
Sbjct: 723 KPMSCDELTTWLAS 736


>gi|330879018|gb|EGH13167.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 493

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 208/426 (48%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L       + +  V +ID+DK+K IND  G AVGD  
Sbjct: 63  LARHDLLSGLLNRRVFNEQLVARL----QQKSTQTAVFLIDLDKFKLINDTHGHAVGDAA 118

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + +       ++ARL G+ F + +  + +  ++A  A  +   IAM  +    
Sbjct: 119 ICAVAESLRDATTGWQALVARLGGDEFSLAVSGDFSQFELAALAENVLAKIAMS-SAGLP 177

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            +T++A++G A        +  +L+ A+ AMY  K+ G      + VS  R  R+     
Sbjct: 178 RVTLSATLGVAISPLDGSDAEVLLQRADSAMYRGKNGGRATFHFYEVSFEREQRLQEVFV 237

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L  + + G E L +W H + G I   +F+ +AE+L +IK
Sbjct: 238 QELRHAIEEKHIQPFYQPIVSLPGQRLAGFELLARWLHSERGIILPMDFIPVAEQLGLIK 297

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  + ++ L S+  +  +R+
Sbjct: 298 QLTESLLLQAFDHARDWPS-----DFTLSINVTSLMIESLDFPDWLEQLASEGRFPLNRL 352

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 353 EVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 412

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S   +  ++++I+ + K++   I A+ +  E     L   GCD+ Q      PL F  
Sbjct: 413 DTSLNNQNEMVKAILALGKSLRMKITAEGVEHEELADWLAAHGCDFAQGYLFGRPLPFAQ 472

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 473 VTALLA 478


>gi|190891269|ref|YP_001977811.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190696548|gb|ACE90633.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 709

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 206/439 (46%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  +  L  A  D+L+G+ NRQ  L  L  + D +++       + ++D+D +K +ND
Sbjct: 283 LRQLAQAALYEAGHDSLSGLLNRQGLLSLLDELDDTASSPPR----LYLVDLDGFKAVND 338

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  +++ +          ARL G+ F ++ +      ++      +    
Sbjct: 339 AWGHAVGDDLIRLVSKALMACHPEVVAAARLGGDEFALVHVGPATCEEMERA---ILALF 395

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           A P  +  R I V ASIG A+     I   E+L+ A++A+Y AK  G      +      
Sbjct: 396 AEPFKIDGRTIEVGASIGAATRDGD-IEPLELLRRADMALYRAKANGRGQAVEYDPELDR 454

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            R     ++  L  A+    +  ++ P++      + GLEAL +W  P  GN+S   F+ 
Sbjct: 455 ERQQVAELEALLKTAIGTGAIEAIFQPLVSASTGMVTGLEALARWRTPA-GNVSPEVFIP 513

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+ + ML        +W      P + + +N++   L + E    + +++ 
Sbjct: 514 LAERCGLIDALGVHMLRTSIAHAKTW------PDLALSVNVSPVQLCNPEFAAEVISVLQ 567

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  + P R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L    FD
Sbjct: 568 ELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFD 627

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++   E  K   +LR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 628 RMKIDRSLVSALDEGAKGADVLRATISLATALQIPVTAEGIENSRQAAILRDAGCDQLQG 687

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+    I   L+E 
Sbjct: 688 YLIGKPMSARDIAGKLQEE 706


>gi|302523942|ref|ZP_07276284.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302432837|gb|EFL04653.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 859

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/800 (18%), Positives = 293/800 (36%), Gaps = 73/800 (9%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSLIIFLFMYLHW 275
           +L   F +A  +   + +  G    +        +  + A  E+ L+ + ++     L  
Sbjct: 56  VLAVAFLLAEQLGINVDVRSGISWTISFTEIPLVIGFFVAPFEVVLA-AHLVAGIGTLLA 114

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG----- 330
            R   +V Y   + +  I   F ++     +             L  T            
Sbjct: 115 RRVAGRVLYNAGAFLLEITGAFAVAGVV-HLAMGGGPTMPWVAALAGTLTAPLVSTLLAL 173

Query: 331 -----------------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG 373
                            + G    V  + A + +  + +         L   +       
Sbjct: 174 AAVRVLRRRMRVSTAIRLTGRILVVGFVNASVGLTGYLVIASTPQAWPLVLAVFLGLTAL 233

Query: 374 GLVLIVILIGFTVIQHV-----LATGYFSQGIFSDGERQSLAVLGSGDIVWDW------- 421
                 +L     ++ +     +      Q       R    V G     W         
Sbjct: 234 YWAYSDLLREQRDMEALSDVSLMVARSGQQAAARPASRAEELVGGVDVREWATIAERIKD 293

Query: 422 DIVRDRVTTTPDIAT-------ILGLASGSMHGPIRNWLPYIHINDRDNFRTI-----LD 469
            +   RV     +         + G           + L  +      +FR       + 
Sbjct: 294 QLAAGRVVLRLRLEADDPMRVVVAGNELPPADPAHDDPLLRLPGAHVRHFRITEANPDVR 353

Query: 470 SFVGYRRGRLQYEFRVRAADN-------QFHWMIIRIRPMSNSN--GDILRYIGIANDIT 520
           + +  R  +      +R+A+               R     +    G +  ++  + D  
Sbjct: 354 AALLERSAQEALVVPLRSANQLLGVVEAHDRLSRWRGFGKYDVQLLGTMASHLATSLD-- 411

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++ L  +  +A+ D LTG  NR  F       +      ++    V+ ID+D +  ++
Sbjct: 412 -NRRLLATLRHDAYHDPLTGHLNRPGF-----QQVSRDPLRESAEVVVLRIDLDVFSTVS 465

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +  D ++++   RI   L     LARL G  F  +L+           A  +R  
Sbjct: 466 DALGYSWADRMVIAAGTRIRGALGPDVPLARLEGASFAALLVDCT-VDDAHRAAERLRVQ 524

Query: 641 IAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++ P  +    +   A IG+AS       +    +L+ A++A+   +           + 
Sbjct: 525 LSEPYPVDRLSVEANAMIGYASSADDAGEVDVDGLLQRADVAVRATRGGEEVRGYVPSMG 584

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  +      ++E+  + + Y P + L + ++ G+EAL++W HP++G +   EF+
Sbjct: 585 QIFLRRFQMVTQFRQSLEDGHVSVHYQPKVTLPNRQVQGVEALVRWVHPEFGRLGPDEFV 644

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E   +I  +  F+LE+  + +  W D+     I   +N++ ++L D++    +Q  +
Sbjct: 645 PAIEAAGLIGVLTSFVLEQSLKRVRKWLDEGLR--ISAAVNLSVRNLSDDDFPAKVQHEL 702

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  +    +ES VM +P+++  +L  L  +GI L +DDFGT  S L+YL  +P 
Sbjct: 703 ERFDVPPELLTFELTESGVMSDPQKALPILRELHSLGIVLAVDDFGTGYSSLAYLRQLPV 762

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK + S + G       +A++RSI+ +  ++  T++A+ +  ++   +L  MGCD  Q
Sbjct: 763 DQVKIDKSFVLGMGTDLGDLAVVRSIVELGHSLGLTVVAEGVEEDVARDQLEAMGCDVAQ 822

Query: 937 DSHVASPLGFNSILKLLKER 956
              ++ PL  + +   L+ R
Sbjct: 823 GYLISRPLPEDRLEAWLQAR 842


>gi|317471177|ref|ZP_07930548.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901392|gb|EFV23335.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 739

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 102/512 (19%), Positives = 215/512 (41%), Gaps = 30/512 (5%)

Query: 463 NFRTILDSFVGYRRGRLQYE--FRVRAADNQFHWMIIRIRPMSNSNGDILR--------- 511
             +  L          +  E  +          W ++ + PM  +N   +          
Sbjct: 233 KLKYALKKQKEGYIEFINKEKKYMYYTPTGINDWYLLTVVPMEVANTKTMNIMKLNYVQS 292

Query: 512 --YIGIAN-----DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              + +        +  +KK    ++  A+ D +TG  N ++F  +    L+     D  
Sbjct: 293 GIVVAVFLLLLIYIVRSEKKKQTRLMEIAYTDVITGGDNYKAFCLKAENALEK----DTA 348

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++ +DID++K +ND+ G  +GD+++  + +  G++L   ++ A    +RF  ++   
Sbjct: 349 KMALLCMDIDRFKLVNDLFGFKMGDEIIRLIWKLWGDMLCEGELAAHREADRFVALMHYH 408

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +           + K  +    +      +  SIG    +   ++   M   A +A    
Sbjct: 409 SEGE----LLKRLDKFCSQIRKIKNMNYKIKPSIGIYLVSDRSMSVDSMSDMALIAQATV 464

Query: 685 KHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K++  ++   +     S       +++ +  A+ + E    + P      +E+ G EAL+
Sbjct: 465 KNQIHSYYAFYNEELKSRIIHNKEMEDRMETALAHHEFCAYFQPKYDTETKELAGAEALV 524

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+      I  ++F+ + EE  +I  ++ FM   + R    W DQ     + + +N++ 
Sbjct: 525 RWNTGDGRIIPPTDFIPVFEENGLIVGLDEFMFREVCRQQREWIDQGRR-AVPVSVNLSR 583

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            ++  +      Q ++ +   SP  + L  +ESV+  +    R ++  L  IG S+ +DD
Sbjct: 584 YNIFYSSFINKYQDILREYEISPKLVPLEITESVMSEDEVLLRNIIDELHSIGFSVLMDD 643

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           FGT  S ++ LG +P D +K + S +      K   I+RSII +++ +   + A+ +  E
Sbjct: 644 FGTGYSSMTMLGSMPIDVLKLDKSFVDDIGDSKGEKIIRSIIDLSRGLGIRLTAEGVETE 703

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              + L +M CD IQ  + A P+  +    LL
Sbjct: 704 EQYEFLRKMKCDEIQGYYFAKPMPGSDFQALL 735


>gi|226357012|ref|YP_002786752.1| diguanylate-cyclase [Deinococcus deserti VCD115]
 gi|226319002|gb|ACO46998.1| putative diguanylate-cyclase [Deinococcus deserti VCD115]
          Length = 456

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/455 (25%), Positives = 218/455 (47%), Gaps = 21/455 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y+   + ++  +   E +   A+ D LTG+P R S   +L  +       +     ++ 
Sbjct: 8   FYLSRTSSLSRLQSEREALQQLAYHDLLTGLPGRLSLERQLDGM----TRPEVQPFALLF 63

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K IND LG A GD +L +L   +  +      + RLSG+ F ++L    ++   
Sbjct: 64  VDVDSFKVINDTLGHAAGDRLLKTLGGELRRVAGEDAQVFRLSGDEFVVLLPGVRSAEAE 123

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A       ++  +P   +   +  T SIG +       T SE+L++A+ AMY  K  G  
Sbjct: 124 AAARRIQEEAPRLPSTRVG--VETTLSIGLSLCPDDAQTPSELLRHADSAMYAVKRSGRR 181

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           HV  +R           ++  +L  A+   EL LVY PI  L D EIV +EAL++W HP 
Sbjct: 182 HVRRYRPDQHAATERFQLLARELGHALARQELRLVYQPIFSLTDGEIVKIEALVRWQHPV 241

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +   EF+ +AE + +I  I L++L+   + +       ++P + + +N++   L+  
Sbjct: 242 LGPVGPDEFIPVAERVGLITPIGLWVLQESCQQL------THLPGLMLSVNVSGLQLMQR 295

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +   G+  ++     +P +++L  +E+ ++   +R+   L  L+  G+ + LDDFG   S
Sbjct: 296 DFVPGVLEVLDNLSLNPQQLELELTETSLLHEDQRAVTALRALQAQGVRVALDDFGAGYS 355

Query: 869 LLSYLGYIPFDTVKFNGSLMT-------GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
            L+ L  +P   VK + S +T          ++   +LR ++ +A+++  T+ A+ +   
Sbjct: 356 NLTRLRNLPISDVKLDRSFVTCFLDDDDQQRQQAEQLLRGVLDIARSLNVTVTAEGLETP 415

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             ++    MGCD  Q   ++ PL    +  L++ +
Sbjct: 416 ALVRLAMEMGCDLGQGYALSLPLSAPEVQDLVRRQ 450


>gi|91975250|ref|YP_567909.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681706|gb|ABE38008.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 610

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/553 (22%), Positives = 236/553 (42%), Gaps = 20/553 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           D +     +      V   D   D +      A+ L +        + +  P I     +
Sbjct: 38  DLQLLEEIIRALPAAVTVLDDRGDFLIVNDAAASRLNVPPSGHAASVVSLNPAI-----E 92

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI-RPMSNSNGDILRYIGIANDITE 521
             R    + +   R   + E   RA         +   RP+    G     +  + DITE
Sbjct: 93  QRRAEAVALLATGRPATKEE---RAGHGATARTFLTAHRPV--EIGSRRLLLSSSLDITE 147

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           QK     +   A+ D+LTG+PNR     R   +L   A     R  +  +D+D +K IND
Sbjct: 148 QKAIENELFRRAYFDDLTGLPNRSVIERRADALLQ--AGGPPNRFALAFLDVDNFKHIND 205

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGD +LV + +R+G  L+  D+L+R+SG+ F ++L    +  ++AD+   + + +
Sbjct: 206 YYGHAVGDALLVGIAKRLGLELRETDMLSRISGDEFLLLLNPIESQGEVADYIDFLLRRL 265

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSS 699
             P  +   E+  +AS G + +     +   + +NA+ AMY  K         F   +  
Sbjct: 266 KAPFYIDGSEVFASASTGVSLYPEHGRSFDALRQNADTAMYRVKSATKGAAAMFDTAMER 325

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ I++ L  A+ +      + P + +   EI G+EAL++         +   F+ 
Sbjct: 326 EALERMSIEQSLRQAILDKRFCCAFQPKVDIRTREIKGIEALVRLRDDNGVIQAPGTFVE 385

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +A EL +I  +   +L  I + I    +        I IN+A+K   +    +     ++
Sbjct: 386 LAVELGLIDELTHLVLAEIMKSIDLINETFGAGA-SISINVAAKQAGNYNFMQSFATALA 444

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T   PSR  +  +E   +        +L  LR++G+ +++DDFG   S LS L  I  D
Sbjct: 445 ATEC-PSRFIVEVTEDAFVAKNHFQSEILPLLRQVGVGISIDDFGIGYSSLSALADITAD 503

Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQ 936
            +K + S +T      +  +IL++I  +++ +  T+IA+ +    ++  L       Y Q
Sbjct: 504 EIKIDRSFITDIHKRPRSQSILKAIESLSEALGMTMIAEGLETFEELAYLQAATKIRYAQ 563

Query: 937 DSHVASPLGFNSI 949
             + + P+  + +
Sbjct: 564 GYYFSKPVFLDDL 576


>gi|58040046|ref|YP_192010.1| sensory box/GGDEF family protein [Gluconobacter oxydans 621H]
 gi|58002460|gb|AAW61354.1| Sensory box/GGDEF family protein [Gluconobacter oxydans 621H]
          Length = 587

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 204/474 (43%), Gaps = 20/474 (4%)

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPN 543
           +R  + +   +  R+ P+  ++ D +         ++  +               TG+  
Sbjct: 107 LRTLEGRSFQVEFRLTPLRRNDLDCMALAITFPPCLSASRSLSPESG--------TGLCG 158

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           ++ F   ++  L    T       ++  +I++++ IN+  G  + D+VL  + +R+   L
Sbjct: 159 QEEFGKAVSAFLGN-GTTRQPAGILLHANINRFRTINERYGTRIADNVLSEIGQRLRAFL 217

Query: 604 KFPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
               I+ARL G+ FGI       +  +   +A  +R      +++    I +TASIG   
Sbjct: 218 TEECIIARLGGDDFGIFCPFPYEHPGQATRWAQIVRDIFHTTLSIEGHRIHLTASIGCCL 277

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
                         AELA+  A+        SF             ++ DL  A+E ++ 
Sbjct: 278 IPFDTYRFETACHYAELALNEARRLQSPDWISFTPLIQADVHHRSELEHDLQRALETNQF 337

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +L + P+I L    I  +EAL++W HP  G IS +EF+ IAEE  +I +I  ++L     
Sbjct: 338 FLEFQPLICLRTNRIECVEALLRWQHPTRGVISPNEFIPIAEESGLIVSIGRWVLLEACA 397

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +           + + +NI++   L +++   +   + +T  +  R++L  +ES+ +  
Sbjct: 398 QVSRLPSH-----VRVAVNISAVQFLHDDMYAAVIQTLFQTGLAAERLELELTESIFLEA 452

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            +R+   + ++R +G+ + +DDFG   S L+YL   PFD +K + S +       +  +I
Sbjct: 453 VQRNLETMSKIRALGVKIVMDDFGIGFSSLNYLRSFPFDRIKIDRSFIRDMLNDPQAQSI 512

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +I+ +   +   +IA+ +     +  L    C   Q   +  P    ++   
Sbjct: 513 VSAIMTLGHAMSMEVIAEGVETAAQLDMLRHTSCSTAQGFLMGRPAPLANLSAY 566


>gi|255655487|ref|ZP_05400896.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296880172|ref|ZP_06904138.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296428761|gb|EFH14642.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 965

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 194/427 (45%), Gaps = 17/427 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLS----ATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           A+ D+LTG        D +      S    A ++     +  +D+DK+K IND+ G  +G
Sbjct: 542 AYTDSLTG-------ADSIDKFKINSNKLFAKNNPEEYALFYMDVDKFKYINDMFGYDMG 594

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           ++ L+ ++  I   LK  +I AR+S + F +++  + +   I     ++   + +  N  
Sbjct: 595 NNTLIHISDTIASELKEDEIFARVSADHFVLLIKYKTD-DDIKTRLNSIYNKVQIFSNPK 653

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVM 706
                +    G    + S    + ++  A  A    K    N    +     +       
Sbjct: 654 INYYKLILDCGIYKISKSDNDINTIMDRANTARKTIKGGHKNSFAFYDKEMHKKILKEKE 713

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  +  A+ N E  + + P  RL D +I+G EAL++WD+P+ G I   EF+ + E    
Sbjct: 714 IENSMVDALNNGEFVVYFQPKYRLSDYQIIGAEALVRWDNPQKGLIPPIEFIPVFERNGF 773

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I+ ++ E + + I  W D+     + I +N++    +++   E  + ++ K     S
Sbjct: 774 IVNIDFYVFEEVCKKIREWMDE-GQEVVPISVNLSRMHFVNSNFIEKFKLIVDKYKIPTS 832

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I+L  +E+ V+ N E     +  L++ G  +++DDFGT  S L+ L  +P D +K + +
Sbjct: 833 LIELELTETAVLDNIEGLLDTMNNLKENGFVISMDDFGTGYSSLNLLKELPVDILKLDRA 892

Query: 887 LM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                  +     ++ ++I MAK ++  +I++ +     ++ L ++GCD +Q    + P+
Sbjct: 893 FFTEKDESNNEKIVISNVIKMAKELKMKVISEGVETISQVEFLKQIGCDMVQGYLFSKPM 952

Query: 945 GFNSILK 951
                 K
Sbjct: 953 PVKEFEK 959


>gi|27364341|ref|NP_759869.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|320157733|ref|YP_004190112.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|27360460|gb|AAO09396.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|319933045|gb|ADV87909.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 843

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 200/435 (45%), Gaps = 13/435 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  +D       +S        ++ ++ +++++ IND
Sbjct: 418 LKASFKALHNQLVFDSLTKLYSREGLID-------VSKRKLTESGSLFMLGVNRFRDIND 470

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L+ ++ RI  L     +LAR  G+ F I     N S ++      +++  
Sbjct: 471 SLGHHNGDQLLIKVSERIQTLFDDQFLLARTGGDEFAIYAPHINQSEEVTLTVNRLQQLF 530

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
             P  + +  + +  SIG    T S    +  L+N  +A+ +AK    G       ++  
Sbjct: 531 IAPFYMNDESVVMKVSIGVV-ITDSDSNMTRWLRNGSIALSNAKQDVSGVSYYRPEMADA 589

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  +   +   +++ E    Y PII L   +++G EAL +W   + G IS  +F+ I
Sbjct: 590 SKFRTQMLAKIQDGIDSQEFIPYYQPIIELKSGKVIGAEALARWLSKQ-GIISPLDFIPI 648

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALIS 819
           AE+  +I+ I   +L +   D        +      + +NI+   LL ++    +  ++ 
Sbjct: 649 AEDSGLIQKIGSQILRQACHDCAKAIAAQHWDARFQLHVNISVNQLLRDDFVAEVSQILQ 708

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T  + + + L  +ES ++ +   +   + +LR +GIS+ +DDFGT  S L+YL  +PFD
Sbjct: 709 ETGLAATNLTLEITESRLVESAHGTLDNMHKLRALGISIAIDDFGTGYSSLAYLHSLPFD 768

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +     +    +++ +++ + K     ++A+ +   +  + L  +GC   Q 
Sbjct: 769 CLKIDRTFVEKLNRQEINNSVVAAVVNITKGFNVNVVAEGVETSLQAELLMELGCTLAQG 828

Query: 938 SHVASPLGFNSILKL 952
              + P+ F+    L
Sbjct: 829 YLYSRPVPFDEWPSL 843


>gi|296451479|ref|ZP_06893216.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296259746|gb|EFH06604.1| probable signaling protein [Clostridium difficile NAP08]
          Length = 965

 Score =  380 bits (975), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 195/423 (46%), Gaps = 9/423 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D+LTG  +   F  ++ +    +  +      +  +D+DK+K IND+ G  +G++ L
Sbjct: 542 AYTDSLTGADSINKF--KINSNKLFAKNNPE-EYALFYMDVDKFKYINDMFGYDMGNNTL 598

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           + ++  I   LK  +I AR+S + F +++  + +   I     ++   + +  N      
Sbjct: 599 IHISDTIASELKEDEIFARVSADHFVLLIKYKTD-DDIKTRLNSIYNKVQIFSNPKINYY 657

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710
            +    G    + S    + ++  A  A    K    N    +     +       I+  
Sbjct: 658 KLILDCGIYKISKSDNDINTIMDRANTARKTIKGGHKNSFAFYDKEMHKKILKEKEIENS 717

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+ N E  + + P  RL D +I+G EAL++WD+P+ G I   EF+ + E    I  I
Sbjct: 718 MVDALNNGEFVVYFQPKYRLSDYQIIGAEALVRWDNPQKGLIPPIEFIPVFERNGFIVNI 777

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++ E + + I  W D+     + I +N++    +++   E  + ++ K     S I+L
Sbjct: 778 DFYVFEEVCKKIREWMDE-GQEVVPISVNLSRMHFVNSNFIEKFKLIVDKYKIPTSLIEL 836

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-- 888
             +E+ V+ N E     +  L++ G  +++DDFGT  S L+ L  +P D +K + +    
Sbjct: 837 ELTETAVLDNIEGLLDTMNNLKENGFVISMDDFGTGYSSLNLLKELPVDILKLDRAFFTE 896

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +     ++ ++I MAK ++  +I++ +     ++ L ++GCD +Q    + P+    
Sbjct: 897 KDESNNEKIVISNVIKMAKELKMKVISEGVETISQVEFLKQIGCDMVQGYLFSKPMPVKE 956

Query: 949 ILK 951
             K
Sbjct: 957 FEK 959


>gi|328471665|gb|EGF42542.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 848

 Score =  380 bits (975), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 197/434 (45%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D+LT + +RQ  ++            +    ++ ++ I+K++ I
Sbjct: 414 SNLKASFKALRDQLVYDSLTRLYSRQGLIEICEN------KPNLCHGSLFLLGINKFRDI 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +LVS+  R+ +      +LAR+ G+ F + +   +    I      +++
Sbjct: 468 NDSVGHHNGDQLLVSIAERLKQQFPDNTMLARIGGDEFALFMPDMDKDEDIRLTERRLQQ 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRV 697
             A P  +    + +  S+G    T         L+NA +A+ +AK     G    S  +
Sbjct: 528 LFAAPFMVEGESVVMKISLGIVQ-TKHGENMPLWLRNASIALSYAKQDPLTGICYYSPEL 586

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S    R  +   +   ++  E    Y PII L    + G EAL +W+    G IS  +F
Sbjct: 587 ASASKFRTQLLTKMQTGIDKREFVPHYQPIIDLASGNVCGAEALARWNSES-GMISPLDF 645

Query: 758 MLIAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +  RD   +  ++       + +NI+   L      + +  
Sbjct: 646 IPIAEESGMIKAIGQQILLQACRDTYKAIENKQWPSDFQLHVNISVNQLSCPAFVDTVTR 705

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T      + L  +ES ++ +   +   + +LR +GI + +DDFGT  S L YL  +
Sbjct: 706 VLDVTKLPAKNLTLEITESRIIDSAPTTLENMTKLRDMGIGIAIDDFGTGYSSLGYLHSL 765

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC  
Sbjct: 766 PFTCLKIDRTFINQLTKENLDSSVVAAVINITAGLKTNVVAEGVEDSTQAQLLRSLGCHQ 825

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+  + 
Sbjct: 826 VQGFYYSRPIPLDE 839


>gi|153838825|ref|ZP_01991492.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149747755|gb|EDM58651.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 848

 Score =  380 bits (975), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 197/434 (45%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D+LT + +RQ  ++            +    ++ ++ I+K++ I
Sbjct: 414 SNLKASFKALRDQLVYDSLTRLYSRQGLIEICEN------KPNLCHGSLFLLGINKFRDI 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +LVS+  R+ +      +LAR+ G+ F + +   +    I      +++
Sbjct: 468 NDSVGHHNGDQLLVSIAERLKQQFPDNTMLARIGGDEFALFMPDMDKDEDIRLTERRLQQ 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRV 697
             A P  +    + +  S+G    T         L+NA +A+ +AK     G    S  +
Sbjct: 528 LFAAPFMVEGESVVMKISLGIVQ-TKHGENMPLWLRNASIALSYAKQDPLTGICYYSPEL 586

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S    R  +   +   ++  E    Y PII L    + G EAL +W+    G IS  +F
Sbjct: 587 ASASKFRTQLLTKMQTGIDKREFVPHYQPIIDLASGNVCGAEALARWNSES-GMISPLDF 645

Query: 758 MLIAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +  RD   +  ++       + +NI+   L      + +  
Sbjct: 646 IPIAEESGMIKAIGQQILLQACRDTYKAIENKQWPSDFQLHVNISVNQLSCPAFVDTVTR 705

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T      + L  +ES ++ +   +   + +LR +GI + +DDFGT  S L YL  +
Sbjct: 706 VLDVTKLPAKNLTLEITESRIIDSAPTTLENMTKLRDMGIGIAIDDFGTGYSSLGYLHSL 765

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC  
Sbjct: 766 PFTCLKIDRTFINQLTKENLDSSVVAAVINITAGLKTNVVAEGVEDSTQAQLLRSLGCHQ 825

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+  + 
Sbjct: 826 VQGFYYSRPIPLDE 839


>gi|237799635|ref|ZP_04588096.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806313|ref|ZP_04593017.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022490|gb|EGI02547.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027426|gb|EGI07481.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 322

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/312 (29%), Positives = 164/312 (52%), Gaps = 5/312 (1%)

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           P  L  RE  VTASIG A         S+++KNA+ AMYHAK  G N+ + ++     + 
Sbjct: 1   PFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKECGKNNFQFYQADMNATA 60

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G +  ++F+ + 
Sbjct: 61  LERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPNDFIPVL 120

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EEL ++  +  ++L    R +  W       P  + +NI+++   D +L + +  ++ +T
Sbjct: 121 EELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQFSDGQLGKRIAGILEQT 179

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP+ ++L  +ES++M   E +  +L  L+ +G+S+ +DDFGT  S L+YL   P D +
Sbjct: 180 GLSPACLELELTESILMREVEEAMHILDGLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVL 239

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + + G    E+   I R+II MA ++  ++IA+ +     ++ L + GCD +Q   
Sbjct: 240 KIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQLEFLRQHGCDEVQGYL 299

Query: 940 VASPLGFNSILK 951
              P+       
Sbjct: 300 FGRPMPPGQFEA 311


>gi|221067582|ref|ZP_03543687.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
 gi|220712605|gb|EED67973.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
          Length = 745

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 200/437 (45%), Gaps = 14/437 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  L  +  +A+ D L  +PNR  F++     +D  A        + +IDID +   ND+
Sbjct: 261 RGLLWRLKESAYHDPLVNLPNRAHFVE----AVDECARQGLHDYILALIDIDDFSATNDL 316

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L  + R + ++L    +LARL  + FG++                + + + 
Sbjct: 317 MGHLFGDRLLERVARCLEDVLPGDVLLARLGADTFGVL------GAIAQVQPRRLLECVR 370

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--F 700
            P+++      V+ + G+          ++++K+A +A+  AK    +    +       
Sbjct: 371 QPLSIDGAPYKVSLTCGYVLLPQEFRAGADLVKDATIALKRAKRDHRSQELQYSDQMGAE 430

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R ++  +L  A+EN EL+LVY P + L+   +VG+EAL++W       +   +F+ +
Sbjct: 431 ARSRALLLSELREAIENQELFLVYQPQLNLVTRSVVGIEALLRWRTEDGRFVPPDKFIPV 490

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I A+  ++L      +    D   + P  I +N+++  L D    + + A ++ 
Sbjct: 491 AEHSGLIVALGQWVLMAACAAMRELLD-TGVAPQRIAVNVSTVQLQDPGFLDMVCAALAG 549

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +      ++L  +ESV     +  +  L  LR  G+S+ +DDFGT  S LSYL  +P D 
Sbjct: 550 SGLRGEHLELEITESVAALPTDLLKSTLSALRAEGVSIAIDDFGTGYSSLSYLEQLPLDR 609

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +          I   ++ + + +  +++A+ I G    + L  M C   Q  +
Sbjct: 610 IKIDRSFVCQLGEPDGARIAEMVVQLGRKLGLSVLAEGIEGATVCQALLAMDCYEGQGYY 669

Query: 940 VASPLGFNSILKLLKER 956
           +A P+  + +L  L+  
Sbjct: 670 IAKPMDKDVLLAWLQAH 686


>gi|320353047|ref|YP_004194386.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121549|gb|ADW17095.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfobulbus propionicus DSM 2032]
          Length = 888

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/583 (21%), Positives = 249/583 (42%), Gaps = 24/583 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASGSMHG 447
            L        +  +       +  +GD V   D+    +      A ++  G +  S+ G
Sbjct: 305 ALVQQQLHDAVNHERNFLQTVIDSAGDPVMVVDLNHTLLLINQAAARLVRDGGSIESLRG 364

Query: 448 P--IRNWLPYIHI-NDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPM 502
               R +        D   +   ++      +    +   +     +   +   +   P+
Sbjct: 365 QKCYRLFCGMETPCQDL-RYPCPVEQVKSNGQPAKLIHNPY---HGNGVNNTFELEASPL 420

Query: 503 SNSNGDILRYIGIANDITEQ-------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            +  G +   I +A DIT++       ++S   +   A  D LTG+PNR  F DR    +
Sbjct: 421 RDGQGKLYGIIEVARDITDRLRIEKELRESQSHLYRLAHHDPLTGLPNRLLFRDRFAQAI 480

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +  + +    V+ +D+D++K IND LG  VGD +LV +  R+    +  D +ARL G+
Sbjct: 481 SKAERNRSG-VAVLFLDLDRFKSINDTLGHDVGDALLVEVAARLQRQCRQSDTVARLGGD 539

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F  IL + ++    +  A  +  ++ +P+     E+T+T SIG A +     T  E++K
Sbjct: 540 EFVFILEAIHDRKDASVVADKIMAALGVPVLAKGHELTITTSIGIALFPLDGATMEEVIK 599

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A+LA+Y AK  G ++ + +R  +        +  +    A+ N EL L Y P   L   
Sbjct: 600 CADLALYAAKEIGRSNYQFYRKGMPPNGGRPRLSGQQFRRAMANGELRLEYGPRYDLHSG 659

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + GL  L +W HP  G +   +F+  AEE  ++  +N ++L  +   + +W +     P
Sbjct: 660 RLTGLRVLPRWHHPAMGVLLPHDFVPAAEECGVLDLLNEWLLGEVCAPLQAWGELGYPCP 719

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + I + S+ LL++     +  ++ +   +P+ + +   E  V     R    LGRL +
Sbjct: 720 -PMTIPLGSRQLLESGFLAALDRMLRQGRVTPAMLVIEVREPAVTEATARMIECLGRLGR 778

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
           +G+   + DFG   + L+ L  +P  ++  + +++    +      +  +II +  ++  
Sbjct: 779 LGLGCAVSDFGADRTSLARLQRLPLGSLTISDAVLADVPANPDSCILTSAIINLGHSLGM 838

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++   I  +     L R GCD  Q   ++ PL    +  LL 
Sbjct: 839 RVVGNGIDRQSQHDFLRRHGCDQAQGPFLSPPLRAEEVPSLLA 881



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 97/255 (38%), Gaps = 21/255 (8%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA-- 392
             A     A          L   +T +L + +    +   +V  +       ++ + A  
Sbjct: 108 SSAGGATLALSAAIRCTPSLSGFLTLQLTSAVPPTTVECRIVADLTDSISLALRQLFADE 167

Query: 393 -TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q +    ER  LA+  S   +WDW+I    + T+PD   +L   S    G    
Sbjct: 168 AARQREQELKRIEERYELALHASQAGLWDWNIRTGEMYTSPDHWELLDYQSSKDDGVQPQ 227

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDIL 510
              +IH  DRD    +L+  +  +    + E+RV+  D ++ W + R R +  + N   +
Sbjct: 228 --RFIHPEDRDRVLAVLNEHLTGKTEEYRIEYRVQEKDGEWTWFLDRGRVVERDDNNMPV 285

Query: 511 RYIGIANDITEQKKSLEGIL--CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           R  G   +IT QK   + I        D +    N +   + L T++D +         V
Sbjct: 286 RMTGTHQNITLQKHQDQAIALVQQQLHDAV----NHE--RNFLQTVIDSAGDP------V 333

Query: 569 MVIDIDK-YKKINDV 582
           MV+D++     IN  
Sbjct: 334 MVVDLNHTLLLINQA 348


>gi|157736611|ref|YP_001489294.1| EAL/GGDEF/PAS domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157698465|gb|ABV66625.1| EAL/GGDEF/PAS domain protein [Arcobacter butzleri RM4018]
          Length = 538

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/549 (19%), Positives = 218/549 (39%), Gaps = 40/549 (7%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLASGSMHGPIRNWL-PYI---HINDRDN 463
           L    S D++W  D+    +     I   +L      + G   N+    +   H  + + 
Sbjct: 13  LISEYSPDMLWIKDLEGRYLYANNAICKGLLIATPDEVFGKDDNFFVERVREKHKENPEY 72

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAAD---NQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                 S       +     R         +  ++ +   P  + NG ++  IG A DIT
Sbjct: 73  HTFSSCSDSDEETLKAMKSLRFIEKGNIRGKLTYLEVDKAPFFDENGKLVGVIGTARDIT 132

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+    E     A+ D LT +PNRQ  +  +         + N     +V +ID +K+IN
Sbjct: 133 EKILLKEKNEKLAYYDQLTTLPNRQKIILDI---------NTNFPTACIVFNIDDFKEIN 183

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G    D +L  +  R  +      I+ R+ G+ F I+     +  ++   A  +   
Sbjct: 184 DFFGTENADKILQDIANRFLDYKY---IVYRIDGDEFAILFYENLSIDQLKSQAQKILTL 240

Query: 641 I-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFR 696
               P  + ++ I++  SIG A    +      +L   ++A+ +AK+   +   + ES  
Sbjct: 241 FDEEPFYVEDQTISIGFSIGIAKAKDN------LLTKVDIAVNNAKNSSSDISVYEESEN 294

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +       + +   +  A+    +   Y P+I +   EI   E L++        I   +
Sbjct: 295 IEKKYKQNLEMATSIKEALLEDRIVCHYQPLIDIETGEIYSFETLVRMIDKDGNIIPPIK 354

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  ++++ +  +I   +++          +          IN+   D+ D E  + +  
Sbjct: 355 FLDFSKKVKLYSSITRKVIKEACETFKHRNENF-------SINLNIADIKDKETVKEIIK 407

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I++T  + S++     ES  + N +     + +++ +G  + +DDFGT  S   +L  +
Sbjct: 408 NITETN-TASKVTFEILESEGIENYDEVISFINQIKALGAKIAIDDFGTGYSNFEHLLRL 466

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             + +K +GSL+      EK   I+ +I+  A+ I    +A+ +  +  ++ +  +G   
Sbjct: 467 DVNYIKIDGSLIKNIASDEKHRIIVETIVSFARRIGIKTVAEFVADKQILEIIKEIGVSC 526

Query: 935 IQDSHVASP 943
            Q  ++  P
Sbjct: 527 AQGYYIGKP 535


>gi|269959728|ref|ZP_06174107.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835482|gb|EEZ89562.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 639

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/442 (23%), Positives = 189/442 (42%), Gaps = 7/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K + + +      D+ TG  NR +  + L  IL+    D      V+ +     + 
Sbjct: 192 IDRRKAAEKQVSYQQTHDHGTGFLNRVALEEVLDHILETMDHDQQ-SLVVINVGFSNARS 250

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           I    G    D+VL     R+G       +  R S N   I++  E+   K+      + 
Sbjct: 251 IETKYGFEAFDEVLKEFRFRLGHNESSYFVTGRPSSNDLVIVVSGEDIESKVQHLLEDIT 310

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
                  ++ E E+ + + IG      S   + ++L+NA  AM   K  G   +      
Sbjct: 311 HVSVGNFHIDENEVHLHSYIGVVQAHRS-SHAKQLLQNACYAMLLCKESGESYNYFCESH 369

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +   ++   ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+   
Sbjct: 370 TQELNNHNQLESYLLQAVRNDDLMLYFQPKVLPHTHKWIGAEALLRWRHPVLGDVSNEAL 429

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  F+L         W +        I +N++   L +    E ++ L
Sbjct: 430 IHMAEQNGLIFEVGSFVLRTAIDKAKQWSELV--DNFKIAVNVSPIQLQNVNFAEQIEHL 487

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         ++L  +ES ++ +   +R  L +L  +G++L+LDDFGT  +  SYL   P
Sbjct: 488 LETFHLPAHFLELEVTESALIADEVVARNTLNKLHNLGVTLSLDDFGTGYASFSYLKKYP 547

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +     ++   AI+ SII +AK ++  ++ + I      + L   GCD  
Sbjct: 548 FDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLDLQVVIEGIESAQQEQFLINEGCDIG 607

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q      P+  N   + L  + 
Sbjct: 608 QGFLYGKPMPCNEFEQSLFNQN 629


>gi|296107028|ref|YP_003618728.1| hypothetical protein lpa_02115 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648929|gb|ADG24776.1| hypothetical protein lpa_02115 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 983

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/582 (21%), Positives = 245/582 (42%), Gaps = 19/582 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I  +  QH    G     + S  +     L +          +   D V+         G
Sbjct: 402 ITQSKPQHFYEEGVAFSSMVSLKQLDDFKLILDSMTLCFIVTNSCGDIVSINTTACKAFG 461

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHW 494
                +    R+         R+ ++  ++ F+  +            F     +     
Sbjct: 462 YEEVELKN--RSLFLLTPPPQREIYKNKINKFLHSKEPDPIDAGNNAIFLGYTKNGSEFV 519

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +    + +       +    +  DI++Q K  E ++  A  D +T + N++ F  R+   
Sbjct: 520 LK--GKFIKRRINKKIYLFVLLKDISQQIKEEENLVWQATHDPVTHLINKKLFHHRVIHA 577

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     + N   +++ ID++    I+++ G+ + +  L  +  RI   + F D LAR+  
Sbjct: 578 LQRCQ-NGNKPISILYIDLEMINFISNIYGMWIEEKFLNEVGSRILSEIHFGDTLARVGD 636

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            RF ++  +  N   +   A  ++  + M     +++  ++ +IG     +   T  ++L
Sbjct: 637 ERFVVLCENNENEALVLQLAEKIKDKLRMVFTFDQQKFFLSCTIGICHRLNKNDTVIDIL 696

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++AE+A+Y AK  G N++  F   +     D +M+   L LA++  +LY    PI+    
Sbjct: 697 RDAEVALYEAKRLGKNNIILFNSAIKKKVEDELMLATQLELAIDTKQLYFELQPIVTFNK 756

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             ++G E L++W       I  S F+ IAE    I  I  ++LE+    +  W+ +    
Sbjct: 757 SFLIGAEILLRWKL-NNKEIPPSMFIPIAERSGAIYQIGYWVLEQGCNIVAEWQKKLKKG 815

Query: 793 PIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            +  I INI+ K L D    E ++ +I+KT  +P  I L  +ES +M + E++R +L  L
Sbjct: 816 KVPYISINISMKQLEDAAFYEKVRKIIAKTKANPYNIVLEVTESALMEH-EQAREVLYSL 874

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNI 909
           RK G  + +DDFGT  S L  L  +P D +K +   +   ++ +   ++++ I+ MA   
Sbjct: 875 RKFGFRMAIDDFGTGYSSLKQLSAMPIDILKVDKYFIDNISKNKLSYSLVKKIVQMAHIF 934

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  II + +      K L ++  D  Q    +  +  +   K
Sbjct: 935 KAKIIIEGLERTEQYKLLAKIKPDAYQGFLFSPSVLQDDFEK 976


>gi|217972149|ref|YP_002356900.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217497284|gb|ACK45477.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS223]
          Length = 744

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/549 (19%), Positives = 228/549 (41%), Gaps = 42/549 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  + +     G A   +               + + R  L+  +  R+ R++ +
Sbjct: 220 ISHQIIAASGEFEPYFGYALQQLE--------------QQHIRAQLELCLSRRQSRIEND 265

Query: 483 FRVR-----AADNQFHWMIIRIRPMSNSNGDILRYIGI-----ANDITEQKKSLEGILCN 532
           F         A   +   +   RP+  +  +++R   +      + ++     +  +   
Sbjct: 266 FTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVS----LMSQLDKI 321

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF+D L  IPN    +  L  +L     +   +  +++IDIDK+   N V G   G+++L
Sbjct: 322 AFEDPLVKIPNLNVLIRTLEGVLAEDIRE---KFNLLIIDIDKFSDFNRVFGSPQGNEML 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + E      ++ARL  ++F ++             A  + +    P    + +I
Sbjct: 379 KHVASCLREHFDACVLVARLKDDKFAVLGPKT------LVTADIISRLFIQPYQQGKSKI 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
           TV  S        +  T+ + +    +A+  AK  G     +++ ++  +      + + 
Sbjct: 433 TVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQANDDNVAYHFELLQA 492

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  ++  +++++   P + +   E+VG+EAL +W  P   N+   +F+ IAE   +I  +
Sbjct: 493 LQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQL 552

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +  +  + + +  +      + + +N+++       + + ++  I+     P +I++
Sbjct: 553 GEQLFVQSCQALCALNEA-GYTNLCMGVNLSAMQFEQENIVDILKQHIADAKVPPKQIEI 611

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ M N E  R  L  LR  GI + +DDFGT  S L+YL  + FD +K + S +  
Sbjct: 612 EVTESIAMQNFEIIRKQLNELRSKGIRIAIDDFGTGFSSLAYLSKLTFDRIKIDKSFIDN 671

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            T      AI+ SII + +     +IA+ +  +   K L+  GC   Q    A P+    
Sbjct: 672 VTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQGYFYAKPMPLPE 731

Query: 949 ILKLLKERF 957
           +L  LK   
Sbjct: 732 LLTWLKNYQ 740


>gi|190890270|ref|YP_001976812.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190695549|gb|ACE89634.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 653

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 205/448 (45%), Gaps = 19/448 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K   E            A QD LTG+ NR+SF   L   L     + +
Sbjct: 193 NFVGLVQLTEELKHKQEEAEELNLVNSRNALQDQLTGLANRRSFFLSLEERL---QKNPS 249

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + +ID+D +K +NDV G A GD VL    RR   L+    I++RL G+ FGII   
Sbjct: 250 TPPVIGIIDLDGFKPVNDVFGHAAGDLVLKETARRFMVLVGEEGIVSRLGGDEFGIIFPC 309

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+  ++  P  + +  + V  S G     +   T+ ++ + A+ A+Y 
Sbjct: 310 SMTRQAIADLGQALCATVRNPYEIPDGSVRVFGSCGIVYPEAGSYTAEDLYEKADFALYQ 369

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L      SE+ L Y PI+ L    +V  EAL
Sbjct: 370 VKSKRSSGVEFFSADHEKILTQRHLIELELQANDFASEMKLDYQPIVELQSGRVVAYEAL 429

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS S F+  AE   +I  +   +  +    +           + +  N++
Sbjct: 430 ARWDSARFGRISPSAFIPAAERTAVIGRMTRILFAQALEALAIMPRH-----LRLSFNLS 484

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    + A+I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 485 ARDICDHETSMALLAMITRSGLDPRRIEFEITETALLSDFDTADRVITMLRAAGISIALD 544

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K +   +           I RS+  + +N+    +A+ + 
Sbjct: 545 DFGTGFSSLSHIHRLAFDKLKIDKGFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVE 604

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            E   + L  +G    Q  + + PL   
Sbjct: 605 SEAIAEGLKAIGVRLAQGYYFSRPLPLE 632


>gi|111221471|ref|YP_712265.1| hypothetical protein FRAAL2035 [Frankia alni ACN14a]
 gi|111149003|emb|CAJ60684.1| hypothetical protein FRAAL2035 [Frankia alni ACN14a]
          Length = 640

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 202/424 (47%), Gaps = 7/424 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDN-LRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           D LTG+ +R+ FLD +   L             V+++D+D+ + +N  LG   GD ++V+
Sbjct: 140 DELTGLADRRHFLDAVGRSLGGGHRARAVTPVAVLLLDLDRMRDVNGALGHEQGDRLIVT 199

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + RR+   L    +LAR+ G+ F ++L            A  +R+++  P+ L    +  
Sbjct: 200 VGRRLLAALPASTLLARVDGDAFAVLLRG-GEVDGAERLAAVLRETLEPPVLLAGTPVRP 258

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCL 713
            ASIG A        + E+ ++AE AM  AK  R G  V +         R++++ ++  
Sbjct: 259 DASIGIACSPEHGRVALELFRHAEEAMLAAKRSRCGQAVYNRAHPPINRARLLLRAEVRQ 318

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++  +L L Y P   L    I G+EAL++W HP  G      F+   +   ++  + ++
Sbjct: 319 ALDRGQLELSYQPKADLRSGRISGVEALVRWRHPVDGVRPPDVFLAELDRAGLMPKLTVY 378

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L++       W        + + +N+ +  ++D      ++A +++    PS + +  +
Sbjct: 379 VLDQALAACAGWHA--GGALLSVSVNVPASVIVDRAFVGVVRAALARHRLPPSALVVEVT 436

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E  ++   E +R  L  LR +G+ ++LDD+GT    L+YL  +P D VK + + +     
Sbjct: 437 EDSLIEAREAARRTLAGLRSLGVRVSLDDYGTGFCSLTYLRELPADEVKLDRTFLRDLDR 496

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              A  I+RS + +A  +   I+A+ +  +   + L    CD +Q   VA P+  + ++ 
Sbjct: 497 DPAAVEIVRSTVSLAHALRLRIVAEGVETQRSWQALADWQCDEVQGFFVAGPMTGDRVVG 556

Query: 952 LLKE 955
            L+E
Sbjct: 557 WLRE 560


>gi|37678378|ref|NP_932987.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37197117|dbj|BAC92958.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 843

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 200/435 (45%), Gaps = 13/435 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +R+  +D       +S        ++ ++ +++++ IND
Sbjct: 418 LKASFKALHNQLVFDSLTKLYSREGLID-------VSKRKLTESGSLFMLGVNRFRDIND 470

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L+ ++ RI  L     +LAR  G+ F I     N S ++      +++  
Sbjct: 471 SLGHHNGDQLLIKVSERIQTLFDDQFLLARTGGDEFAIYAPHINQSEEVTLTVNRLQQLF 530

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSF 700
             P  + +  + +  SIG    T S    +  L+N  +A+ +AK    G       ++  
Sbjct: 531 IAPFYMNDESVVMKVSIGVV-ITDSDSNMTRWLRNGSIALSNAKQDVSGVSYYRPEMADA 589

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R  +   +   +++ E    Y PII L   +++G EAL +W   + G IS  +F+ I
Sbjct: 590 SKFRTQMLAKIQDGIDSQEFIPYYQPIIELKSGKVIGAEALARWLSKQ-GIISPLDFIPI 648

Query: 761 AEELCMIKAINLFMLERIARDII-SWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           AE+  +I+ I   +L +   D   +   Q       + +NI+   LL ++    +  ++ 
Sbjct: 649 AEDSGLIQKIGSQILRQACHDCAKAIAAQRWDARFQLHVNISVNQLLRDDFVAEVSQILQ 708

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T  + + + L  +ES ++ +   +   + +LR +GI + +DDFGT  S L+YL  +PFD
Sbjct: 709 ETGLAATNLTLEITESRLVESAHGTLDNMHKLRALGIGIAIDDFGTGYSSLAYLHSLPFD 768

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +     +    +++ +++ + K     ++A+ +   +  + L  +GC   Q 
Sbjct: 769 CLKIDRTFVEKLNRQEINNSVVAAVVNITKGFNVNVVAEGVETSLQAELLMELGCTLAQG 828

Query: 938 SHVASPLGFNSILKL 952
              + P+ F+    L
Sbjct: 829 YLYSRPVPFDEWPSL 843


>gi|113969421|ref|YP_733214.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113884105|gb|ABI38157.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
          Length = 765

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 208/450 (46%), Gaps = 18/450 (4%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI  ++K    +L  +  D+LTG+ NR +    LT +      + +L  T++++DI 
Sbjct: 331 MREDIEAREK---DLLYQSRHDSLTGLLNRFAAKQHLTDL------NQDLSGTIVLLDIK 381

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++ IND++G A  D +L+   RR+ +L    D+LARL G+ F ++        ++  F 
Sbjct: 382 HFRHINDIIGFANADSLLLLFARRLEQLAPTADMLARLDGDSFLLLYRQGIGGDQLLKF- 440

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVE 693
                 +  P  +    I++T   G     ++      +L+ AE+A+  A          
Sbjct: 441 ---LDMLEAPFPIQGSNISLTVRAGLLEIDANGADIDVLLRRAEIALNQACLQELRIVSY 497

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      + +  DL + +   +LYLV+ P + L   +  G EALI+W HP  G I 
Sbjct: 498 REGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKVNLPLNQCTGAEALIRWQHPTLGFIP 557

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE    I  ++ ++L++  + +++W+ Q     + + IN+++ DLLD  L   
Sbjct: 558 PDEFIQLAENSGNIDIVSQWVLKQAIKQLVTWQQQG--LALKLAINLSAHDLLDTRLPNQ 615

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L+      P  + +  +E  VM + +    +L R R +G+S+ +DDFGT  S L+YL
Sbjct: 616 IANLLKDNHLQPGALCIEVTEGAVMKDAQTVVGVLQRFRDMGVSVAIDDFGTGHSSLAYL 675

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D VK + S +       +   I+ + I +   +  +++A+ +     +  L  + 
Sbjct: 676 KLLPVDEVKIDRSFIQNMHLNSQDAMIVNTSIQLIHGLGFSVVAEGVEEREGVDILRHLN 735

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           CD IQ    + PL      +  +      K
Sbjct: 736 CDLIQGYVYSKPLKAAEFDQWFEAFNSSSK 765


>gi|255100502|ref|ZP_05329479.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 965

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/430 (22%), Positives = 189/430 (43%), Gaps = 17/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLS----ATDDNLRPTVMVIDIDKYKKINDVLGI 585
              A+ D LT         D +      S    A ++     +  ID+DK+K IND+ G 
Sbjct: 539 RKIAYTDPLTE-------ADSIDKFKINSNKLFAKNNPEEYALFYIDVDKFKYINDMFGY 591

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            +G+D L+ ++  I   LK  +I AR+S + F +++  + +   I      +   + +  
Sbjct: 592 DMGNDTLIHISNTIASELKEDEIFARVSADHFVLLIKYKTD-DDIKTRLNNIYNKVQILS 650

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD-- 703
           N       +    G    + S    + ++  A  A    K    N    +     +    
Sbjct: 651 NPKINYYKLILDCGIYKISKSDNDINTIMDRANTARKTIKGGHKNSFAFYDKEMHKKILK 710

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  +  A+ N E  + + P   L D +I+G EAL++WD+P+ G I   EF+ + E 
Sbjct: 711 EKEIENSMVDALNNGEFIVYFQPKYSLSDYQIIGAEALVRWDNPQKGLIPPIEFIPVFER 770

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I+ ++ E + + I  W D+     + I +N++    +++   E  + ++ K   
Sbjct: 771 NGFIVNIDFYVFEEVCKKIREWMDE-GQKVVPISVNLSRMHFVNSNFIEEFKLIVDKYKI 829

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               I+L  +E+ V+ N E     +  L++ G  +++DDFGT  S L+ L  +P D +K 
Sbjct: 830 PTRLIELELTETAVLDNIEGLLDTMNNLKEKGFVISMDDFGTGYSSLNLLKELPVDILKL 889

Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + +       +     ++ ++I MAK ++  +I++ +     ++ L ++GCD +Q    +
Sbjct: 890 DRAFFTEKDESNNEKIVISNVIKMAKELKMKVISEGVETISQVEFLKQIGCDMVQGYLFS 949

Query: 942 SPLGFNSILK 951
            P+      K
Sbjct: 950 KPMPVKEFEK 959


>gi|254784536|ref|YP_003071964.1| hamp domain/ggdef domain/eal domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685322|gb|ACR12586.1| hamp domain/ggdef domain/eal domain protein [Teredinibacter
           turnerae T7901]
          Length = 770

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 201/451 (44%), Gaps = 14/451 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E K     IL  A  D LTG+ NR    D L   +DL   D      +  + +   + 
Sbjct: 328 VGEIKNREAHILYQAQHDLLTGLMNR----DTLLQAIDLVVKDQQP-FYLFALQLRDLQG 382

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAM 637
           IND LG   GD  L  +  R+  L         RL G+ F  + +   +       A  +
Sbjct: 383 INDNLGFDAGDACLKEIADRLRRLFGGNLAKHGRLEGDVFLSLAVCPQDVPCAEKLA-EI 441

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +  P+      + V+ S+G   +     T   +++  ++A+  A+ +G +       
Sbjct: 442 LDQLGEPVIFHGLNLYVSFSVGVCRFPEDGNTGKTLVRRTQIALDTARKQGLSVRYYQAG 501

Query: 698 SSFRSD-RVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  R+ + EDL +A    + +L++ Y P + L +  I  LEALI+W  PK G +  
Sbjct: 502 EDEAHMERLSMVEDLKVALNANDGQLFMNYQPKMNLANNRIEKLEALIRWVRPKTGFVPP 561

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I  +  ++++ +   + +W+ +     I + INI+++DL+  E    +
Sbjct: 562 DVFIELAERAGLILELTHWVIDSVLAQLAAWKQEG--ISIQVAINISAQDLMHPEFFNRL 619

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           QA   +       I L  +E  +M N ER   L+ +LR  G +L++DD+G   S L  L 
Sbjct: 620 QASTQRHGVDARFITLELTERDLMSNEERGVALMQQLRDAGYTLSVDDYGIGQSSLGKLK 679

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +    E      I+RS I +  N+  +++A+ +      + L  MGC
Sbjct: 680 QLPIHELKIDKSFILKLDESDTDQMIVRSTIDLGHNLGLSVVAEGVENLASQQLLREMGC 739

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           DYIQ  +++ PL  +++   L +     K+ 
Sbjct: 740 DYIQGYYLSKPLSVDAVRPWLLDHENPRKHA 770


>gi|149194926|ref|ZP_01872019.1| hypothetical protein CMTB2_08700 [Caminibacter mediatlanticus TB-2]
 gi|149134847|gb|EDM23330.1| hypothetical protein CMTB2_08700 [Caminibacter mediatlanticus TB-2]
          Length = 873

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/553 (21%), Positives = 236/553 (42%), Gaps = 40/553 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S A+  S   V   D   + +     +  I GL      G           N    F  
Sbjct: 352 LSQAIEKSYQWVLITDSKANILYANDVVEQISGLKKEKFIGKKP--FEIFSANGNKEFYK 409

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +  ++  ++  F  +  + +F+++ ++I P+   +   + Y+ +  DIT QKK  
Sbjct: 410 NIWNKI-QKKEIVEDIFIEKNKNGEFYYLKLKIIPIEVDD--EVYYVALGLDITNQKKLQ 466

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +    F D LTG+ NR+ F+     +          +  +M+IDI  +K IN V G  
Sbjct: 467 ESL----FIDELTGLYNRKGFI-----LNAKKRIKKENKYVLMLIDIKNFKAINQVNGNI 517

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  L  L+  +       D++ R+ G+ F +++        +AD +  ++K +     
Sbjct: 518 YGDLKLKQLSEFLRAFFYEEDLIGRIGGDEFAVLI----EINDLADISNIIKKFVKKIKL 573

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +   +I     IG A +     +  E+++ A +A+  AK  G N+ E +          +
Sbjct: 574 IENLDIN----IGIAFYPRDAESVDELIEKASIALDFAKKAGENNFEVYNQDIKTQIEEL 629

Query: 707 I--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +  K+ +  A+E  E    + P   + +++IVG EALI+          +  F+  AE+ 
Sbjct: 630 MNAKQLIKEALEKDEFIYFFQPYYSIKEDKIVGAEALIRIIKKNKIITPN-FFIDYAEKS 688

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I   M ++I       +       I +  N+++    +    E ++ +  +    
Sbjct: 689 GVIVNIEEKMFKKINNFYRELQ-------IPLSFNVSAVSFKNK---EQLKKIFERVDVP 738

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              I +  +E  V  N E ++ +    +     + +DDFGT  S  +Y+  +  D VK +
Sbjct: 739 ---ITIELTEREVANNIEYTKEVFEFFKYKNFKIAIDDFGTGYSTFTYIKELNLDIVKID 795

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +     + K  A++++II +AK  +  ++A+ +  +  ++ L  +GCDYIQ   ++ 
Sbjct: 796 MQFIKNIEHSSKDYALVKTIIILAKEFDLKVVAEGVENKKQLQILRDLGCDYIQGYLISK 855

Query: 943 PLGFNSILKLLKE 955
           PL F  +   +KE
Sbjct: 856 PLPFQEMKLFIKE 868


>gi|111224004|ref|YP_714798.1| hypothetical protein FRAAL4612 [Frankia alni ACN14a]
 gi|111151536|emb|CAJ63254.1| hypothetical protein; putative membrane protein; putative GGDEF and
           EAL domains [Frankia alni ACN14a]
          Length = 747

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 206/457 (45%), Gaps = 28/457 (6%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D LT + NR   L+   T +     +      ++++DI+++ +IND LG   GD +
Sbjct: 189 QSHADPLTHLANRAGTLEGGETAVAEIQAEGREAI-LILVDINRFHEINDALGHVGGDRL 247

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA--------------- 636
           L  + R +  L   P  + R  G+ F ++         +A  A                 
Sbjct: 248 LQIIARTLSGLRPIPAFVGRAGGDEFALVFRGMPVPSTVAMAASRPGAPLPVPTAAETKR 307

Query: 637 -------MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  + + I  P  +   ++ V AS+G A       T S +L  A+ A+  AK  G 
Sbjct: 308 RRVLGRRVLRQIQGPFQVCGVDVEVDASVGIAVAPRDSTTMSGLLTCADSALLRAKRVGE 367

Query: 690 NHVESFR-VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           +       ++  R + + +   L  A+   EL L Y P+       IVG EAL++W HP 
Sbjct: 368 SVGLWDPGITGVRPEEIALYAQLRTAITRGELVLYYQPLQSACSGGIVGAEALLRWHHPT 427

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G ++   F+ +AE   +I  +  ++L+   R   +W D+     + + +N++++ L+ +
Sbjct: 428 RGLLAPGVFLPVAERSPLIADLTRWVLDEALRQCAAWADEGLR--LPVSVNLSARMLVLD 485

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + +   ++    +   + L  +ES ++  P R+  +L  LR  G+SL+LDDFGT  S
Sbjct: 486 DLPQVVAGSLAAHGLASDVLTLEITESALVTQPTRAATMLSELRTQGVSLSLDDFGTGYS 545

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            +  L  +PFD VK +   +T +       AI+RS++ +   +   ++ + I  E  +  
Sbjct: 546 SMEILKTLPFDEVKIDRGFVTDARGSLPDAAIVRSVLDLGHRLGLRVVGEGIEDERTLAM 605

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +  +GCD +Q   ++ PL    + +LL+ R     + 
Sbjct: 606 MIDLGCDLLQGEAISVPLPAAKMSELLRSRAAARPSA 642


>gi|66045833|ref|YP_235674.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63256540|gb|AAY37636.1| GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 534

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 206/428 (48%), Gaps = 13/428 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D L+G+ NR+ F ++L   L         +  V +ID+DK+K IND  G A GD
Sbjct: 101 ESLARHDPLSGLLNRRVFHEQLVARL----QQPATQTAVFLIDLDKFKLINDTHGHAAGD 156

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             + ++   + +        +ARL G+ FG+ +  + +  ++A  A  +   IA   ++ 
Sbjct: 157 AAICAVAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAENILAKIAAS-SVG 215

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
              + ++A++G A           +L+ A+ AMY  K  G      + VS  R  R+   
Sbjct: 216 LPRVALSATLGIAIAPMDGSDPDLLLQRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQ 275

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +L LA+E  ++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +
Sbjct: 276 FARELTLAIEEKDIQPFYQPIVSLPEQRLAGFELLARWLHPERGIILPLDFIPVAEQLGL 335

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           IK +   +L +       W          + IN+ S  +   +  + ++ L ++  +  S
Sbjct: 336 IKPLTATLLLQAFDQARDWPS-----DFTLAINVTSLMIESPDFPDWLEQLANEGKFPLS 390

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S
Sbjct: 391 RLEVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTRLAIDKIKIDRS 450

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + E +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL  
Sbjct: 451 FFDTALENQNEMVKAILALGKSLRMKITAEGVEHERLADWLATHECDFAQGYLFGRPLPL 510

Query: 947 NSILKLLK 954
             + +LL 
Sbjct: 511 AQVKELLA 518


>gi|114564433|ref|YP_751947.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335726|gb|ABI73108.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 753

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/579 (18%), Positives = 223/579 (38%), Gaps = 29/579 (5%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +   L     S  + S  ++               D+  + V         L +  G   
Sbjct: 188 LASSLELRRLSVLLDSKDKQYQELFQLLPMPCALIDLHNNVVLQNDASKQNLPITVGQ-- 245

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
               +    +   D       L         +   E  +R    Q +W         N  
Sbjct: 246 ----SLFSLLREEDHPLLLDTLHIVREGILRQAWCEVPLRNGV-QIYWYKFSFCHALNKQ 300

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +L  I    D+TE+ +  + +  ++  D LTG+PNR  F + L  +L     ++++  
Sbjct: 301 QQLLLMI---EDVTERYRLADELSFHSNYDVLTGLPNRLQFENMLEELL---KDEEHIPA 354

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +  +D+D+++ +ND+ G   GD +L  +  R+ +LL+  D++ARL G+ FG+++   + 
Sbjct: 355 CIAFLDLDQFQVVNDLSGHQAGDVLLQQVAVRLKQLLRKDDVVARLGGDEFGLLMHYSDT 414

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +          ++           +  ++ASIG A           ++  A+ A   AK 
Sbjct: 415 ASAQQVAKRICQQLFDHEFTWKGIKHNISASIGIAKVDYVDSDIYGVMSKADAACRLAKE 474

Query: 687 RGGNHVESFRV---SSFRSDRVMIKE-DLCLAVENSELYLVYHPIIR-LMDEEIVGLEAL 741
            G N    +             M+   D+  A+  ++  L Y  I      +  + +E L
Sbjct: 475 EGRNRWHFYNPDDPQMHMMYNQMLASVDITGALALNQFELFYQLIEPLDKPDTGIHMEIL 534

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD----IISWRDQANMPPIFIL 797
           ++        +S   F+  AE   +   ++ ++++ + +     +  W   +      + 
Sbjct: 535 LRMVQSDGQYVSPGVFLPAAERYNLAPRVDRWVIDNLLKWGGNNLAIWEQLS-----MVS 589

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+++  L DN+    ++  +       S++    +E+  +   +++  L+  LR  G  
Sbjct: 590 VNLSAMSLADNKFMTWLEMRLMVEPELVSKLCFEITETAAVSQLDQATGLIELLRPFGCK 649

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + LDDFG+  S  +YL  +  D VK +G  +    E     AI+ +I  + K++   +IA
Sbjct: 650 IALDDFGSGFSSFAYLKCLDVDYVKIDGQFVVNLCENRSDKAIVSAICQLGKDMGFEVIA 709

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +        L  +G DY Q   +  P     +   L+
Sbjct: 710 EFVENTDIGVYLKNIGVDYAQGYAINKPTRLAELQHGLR 748


>gi|323486570|ref|ZP_08091892.1| hypothetical protein HMPREF9474_03643 [Clostridium symbiosum
           WAL-14163]
 gi|323400163|gb|EGA92539.1| hypothetical protein HMPREF9474_03643 [Clostridium symbiosum
           WAL-14163]
          Length = 980

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 191/443 (43%), Gaps = 15/443 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  + K  +     A  D LTG+ NR++F +R    L       + R  ++  +++ +K 
Sbjct: 542 IMMELKEKKAYQLMAETDELTGMYNRKAFYER---ALRYMDESPDRRFQIIFFNVENFKV 598

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +ND+ G+  GD +L+ L   I E       + +R  G+ F +   +E +     +    +
Sbjct: 599 VNDLFGVQAGDGILIFLAGIIKEWTAEKGGVCSRFEGDHFVVC--TEEDDEYAKEITNKI 656

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R  +     +    + V  S G         + + M   A +A+   K     HV  +  
Sbjct: 657 RSELKT-YPID---MNVEVSCGIYHVHGRDKSINIMCDRAHIAVNSIKGNYARHVAVYDD 712

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S         +I  ++  A+E  + ++   P   +  E+I+G EAL++W HP+ G +   
Sbjct: 713 SHREAIIHSQLIVSEMNRAMEQRQFHVYLQPKFNMETEKIIGAEALVRWVHPERGILPPG 772

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ I E    I  ++L+M E   + +  W D     P+ + +N++     + +LCE + 
Sbjct: 773 DFIPIFEHNGFIGQLDLYMFEETCKVLRRWLD-GGRQPVPVSVNLSRVGFYNPKLCEHLY 831

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               K       ++L  +E+    +       + +LR++G  + +DDFG+  S L+ L  
Sbjct: 832 KTAQKYRLPLDLLELEVTETAYASDSRTIHSHIRQLRRMGFKILMDDFGSGYSSLNMLKE 891

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K +   ++      +   IL+ +I M K +   ++A+ +  +  ++ L    C 
Sbjct: 892 APVDQIKLDMRFLSEPDPYGRAETILQMVIAMGKALSIPVLAEGVETKGQVEMLKSYSCC 951

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q  + A PL      +++ ++
Sbjct: 952 LAQGYYYARPLTVEKFEEMMDKQ 974


>gi|119944988|ref|YP_942668.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119863592|gb|ABM03069.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 810

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 203/438 (46%), Gaps = 16/438 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   A  D+LTG+ NR SF ++L + +  +   +     +  ID+D +K +ND  G   
Sbjct: 355 KINTLANNDSLTGLANRGSFNEKL-SAIMDARQKNKTYVALFFIDLDNFKYVNDTFGHDT 413

Query: 588 GDDVLVSLTRRIGELLKFPD---------ILARLSGNRFGIILISENNSLKIADFAIAMR 638
           GD +LV  ++R+ +LL+  D          +ARL G+ F I++    +   I      + 
Sbjct: 414 GDRLLVVFSQRLQQLLRAEDNFISGNMIDSIARLGGDEFVILMNGLPSIETIESIGKRIC 473

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                   + E +  V ASIG A     +I    +L  A+ AMY AK  G N+ + F   
Sbjct: 474 DLFHNGFRIGEEQFDVHASIGIAYSNDHQINGEGLLTQADDAMYLAKRAGKNNFKLFSDE 533

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     I+ +L  A  +++L+LV+ P        + G E L++        I    
Sbjct: 534 IKEKMLFEKNIENELIDAHRDNKLHLVFMPAYCAETRILRGYEILLRCPSLLNVGIGPDV 593

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE   +I AI+L++ ++    +     +      F   N++SK L ++     ++ 
Sbjct: 594 FIPIAENTDLILAIDLWVAQQTVIRLKEVIHKNRFTGFF-SFNVSSKSLRNDRFYTTLKE 652

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I+ +  +P +++L  +E+ +M +  ++   L +L+ +G+ + LDDFGT  +    +   
Sbjct: 653 FINTSDINPKQLELEITETCLMPDDHQAVASLDQLKSLGVRIALDDFGTGYTSFGQILNY 712

Query: 877 PFDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           P DT+K + S +T        +   L  I  +AK  + ++I + I  + D + +  +GCD
Sbjct: 713 PLDTLKIDRSFVTDLRNTPVGQKPTLDIIFELAKAYQLSVIVEGIETQADFEHVKTLGCD 772

Query: 934 YIQDSHVASPLGFNSILK 951
            +Q  + ++P  +  +LK
Sbjct: 773 IVQGFYFSNPRTWTEVLK 790


>gi|315443784|ref|YP_004076663.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
 gi|315262087|gb|ADT98828.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. Spyr1]
          Length = 758

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 197/438 (44%), Gaps = 16/438 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            Q      +      D LTG+PNR  F +RL           +    ++ +D+D +K++N
Sbjct: 325 AQWALTRRLYWAVRHDPLTGLPNRILFSERLERA------ARDRDFVLIFVDLDDFKEVN 378

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD++L ++ RR+   L   D LAR+ G+ F ++     +  ++   A  +R +
Sbjct: 379 DRYGHAAGDELLCAVGRRLSGCLADGDTLARIGGDEFAVLAR--ADRDRLDQVADRLRLA 436

Query: 641 IAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +  P  +    + VTAS+G     ++    T  ++L++A+++M   K +G +    ++ S
Sbjct: 437 LRSPFMVQGSSVRVTASMGVVGPEATGLPQTPDDLLRHADISMLAGKRQGKDTAVVYQAS 496

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I             +LVY  I+ L +E  V +EAL +W  P    ++   F+
Sbjct: 497 TRTPADFPIALREAEGAVPQGFHLVYQHIVSLPEEVPVAVEALARWTAPNGIRVAPETFV 556

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE   +   ++  +L+   R+I +         + + IN+ +  L      E ++  +
Sbjct: 557 ATAEAAGLGAVLDALVLDLACREIAA-----AGIGVDLHINVGAARLGSTGFDENVRRTL 611

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P R+ +  +E+V + +   +   + RL  +G+ + LDDFG+  + L+YL  +P 
Sbjct: 612 ARYGIEPQRLVIEITETVPIVDIADAAAQIRRLAALGVRVALDDFGSGYNSLTYLHALPV 671

Query: 879 DTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             VK + SL+ G+     +A+ RS++ +   +   +IA+ I        +   GC + Q 
Sbjct: 672 HIVKLDRSLVAGADPAHDLALYRSVMSICTGLGLLVIAEGIETRAQADNVQAAGCRFAQG 731

Query: 938 SHVASPLGFNSILKLLKE 955
                P+    I    + 
Sbjct: 732 HLFGRPVPARDIGNFRQN 749


>gi|152964607|ref|YP_001360391.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359124|gb|ABS02127.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 800

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/449 (27%), Positives = 207/449 (46%), Gaps = 24/449 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVMVIDIDKYKKIN 580
           +  + E +   A +D +TG+PNR  F +RL   LD +     L R  V+ +D+D +K +N
Sbjct: 351 RVSASEEMHGLARRDVVTGLPNRLQFAERLAQELDRAREASRLDRLVVLYLDLDGFKSVN 410

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD++L  +  R+ + L+    +ARL G+ F ++L    +   +      +  +
Sbjct: 411 DRFGHEAGDELLRLVGSRLRDTLRGGSTVARLGGDEFAVLLPDCQD---VEGLCRRVLVA 467

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
           + + + +    + V  SIG +           +L+NA+ AMY AK  G N    FR    
Sbjct: 468 LRVEVRMRGHVLRVQGSIGLSRARP-GDDVGTLLRNADTAMYRAKATGKNRWVEFRPELL 526

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-------EIVGLEALIQWDHPKWG- 750
                R+ + EDL  A       + Y PI+ L           IVGLEAL++W   + G 
Sbjct: 527 EEEIARLQVIEDLQQAPAE-AFVVHYQPIVDLQAGPDQDPAARIVGLEALVRWRRDRGGG 585

Query: 751 ---NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               +   EF+ +AE    + AI   +L ++ARD  S +  A    + +++N++   L  
Sbjct: 586 VEPLVGPDEFIGLAERSGTVVAIGDSVLRQVARDAASIQQHAARR-LDLMVNVSPVQLRH 644

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +  E + A + +T  S  R+ L  +ESV++ +   +   L  L + G  LT+DDFGT  
Sbjct: 645 PDFTERVAAAVRQTTSSGCRLHLEMTESVMIDD--DTVGRLRDLAETGAQLTIDDFGTGF 702

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L YL + PF + K + S +     +    A++  ++ M + +  TI+A+ +      +
Sbjct: 703 SSLGYLRHRPFSSFKIDRSFVRDIATEPTARALVEGMVKMGQALGLTIVAEGVEHPEQAE 762

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            L  MGC   Q      PL    I  +L 
Sbjct: 763 ILRDMGCHLAQGHLYCRPLALEDIQGVLS 791


>gi|197334048|ref|YP_002154863.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197315538|gb|ACH64985.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 851

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/447 (22%), Positives = 210/447 (46%), Gaps = 9/447 (2%)

Query: 508 DILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +    +   ND+T + + S + +      D+LT + +RQ  +++   +LD     +    
Sbjct: 404 ETTLLMNAFNDMTNKLQSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKENHEQ--- 460

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISEN 625
            ++VI I+ ++ IND  GI  GD +L +++ R+     +    +AR+ G+ F +     N
Sbjct: 461 GLLVIGINNFRDINDSFGILEGDQLLKNISDRLQCSFTQDNIAIARVGGDEFALFFSKLN 520

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +  ++  +A  M      P  +      ++ S G      S  + +  L+NA +A+  AK
Sbjct: 521 DVEQLKQYARDMEGCFMTPFRVASNNSLLSISTGLVYGDLSCDSMTLWLRNASIALGQAK 580

Query: 686 HRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  + +  ++     +  +  +L LA++N EL   Y PII +   + +G EALI+W
Sbjct: 581 KNNLNMSLYTPEMAEASLHKANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIRW 640

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASK 803
             P  G +S  +F+ +AEE  MI  +   +L +   D +   +Q   P    + +N++  
Sbjct: 641 LSPLRGMVSPLDFIPLAEENGMIIPMGSQVLTQACLDTVERINQGLWPADFHMHVNLSVC 700

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L  N   + +++++  T  +P  + L  +ES ++ +   +   + ++R +G+ + +DDF
Sbjct: 701 QLTQNNFLDELKSVLHNTRMAPENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDF 760

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+Y+  +PFD +K + S +   T +    +I  ++  M +  + T++A+ I  +
Sbjct: 761 GTGYSSLAYIHKLPFDVLKVDRSFIKDLTAENIDSSIAAAVCNMTQGFDITLVAEGIETQ 820

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNS 948
              K L  +   + Q    + P+    
Sbjct: 821 EQAKLLASLNYHHAQGFLYSRPIPLED 847


>gi|109900096|ref|YP_663351.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109702377|gb|ABG42297.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 540

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/451 (24%), Positives = 212/451 (47%), Gaps = 20/451 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +       N   D LTG+ NR   +  +  ++            ++++D++++K+IND L
Sbjct: 97  QLAAQERSNLLHDPLTGLANRAYLMQDMQALIANEEQ-----FDLLILDLNQFKQINDAL 151

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI----------SENNSLKIADF 633
           G   GD +L  +  +IG+ L     L RL G+ F I+               ++ +I D 
Sbjct: 152 GHYFGDVLLCQVGLKIGQTLPNTCTLYRLGGDEFAIVSTAMVSENTSQKENESANRIDDI 211

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHV 692
           A  +  ++     +   E++V+A IG   +     ++  +L  A LA+Y  K        
Sbjct: 212 ARLIHSTMDENFEIESYELSVSACIGGTGFPELGRSAEILLGQANLALYECKKNTSSFSH 271

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            S    +  +D + I   L  AV   E  L Y PII L D  + G EALI+W       I
Sbjct: 272 YSSAFETGAADNLSIATRLKQAVALEEFELWYQPIIDLSDGSVNGAEALIRWPQLDGSYI 331

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +  +F+ IAE+  +I  I   ++  +  DI  +        + + +N++ KDL    L +
Sbjct: 332 APDKFIKIAEQSLLITQITQRVMNIVKEDIQLFNQS--KLSLCVHLNLSVKDLQSPHLVD 389

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + ++ S+  +S   + L  +ES +M +  R ++ + ++   G++ ++DDFGT  S L+ 
Sbjct: 390 NINSIFSQCDWSKHALMLEVTESAMMTDVARVKITMAQIANTGLAFSIDDFGTGYSSLAL 449

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P + +K + S ++    +E  +AI++S I +AK++   I+A+ +      + L  +
Sbjct: 450 LRDLPVNQIKIDRSFVSNILKSEDDLAIVKSTIYLAKHLGCNIVAEGVEDAQTGQLLKSL 509

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           GCD+ Q  + + PL   S ++  +   P+ +
Sbjct: 510 GCDHAQGYYYSKPLKIESFIQFAESHRPITQ 540


>gi|327192361|gb|EGE59324.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 653

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 205/448 (45%), Gaps = 19/448 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K   E            A QD LTG+ NR+SF   L   L     + +
Sbjct: 193 NFVGLVQLTEELKHKQEEAEELNLVNSRNALQDQLTGLANRRSFFLSLEERL---QKNPS 249

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + +ID+D +K +NDV G A GD VL    RR   L+    I++RL G+ FGII   
Sbjct: 250 TPPVIGIIDLDGFKPVNDVFGHAAGDLVLKETARRFMVLVGEEGIVSRLGGDEFGIIFPC 309

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+  ++  P  + +  + V  S G     +   T+ ++ + A+ A+Y 
Sbjct: 310 SMTRQAIADLGQALCATVRNPYEIPDGSVRVFGSCGIVYPEAGSYTAEDLYEKADFALYQ 369

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L      SE+ L Y PI+ L    +V  EAL
Sbjct: 370 VKSKRSSGVEFFSADHEKILTQRHLIELELQANDFASEMKLDYQPIVELQSGRVVAYEAL 429

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS S F+  AE   +I  +   +  +    +           + +  N++
Sbjct: 430 ARWDSARFGRISPSAFIPAAERTAVIGRMTRILFAQALEALAIMPRH-----LRLSFNLS 484

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    + A+I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 485 ARDICDHETSMALLAMITRSGLDPRRIEFEITETALLSDFDTADRVITMLRAAGISIALD 544

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K +   +           I RS+  + +N+    +A+ + 
Sbjct: 545 DFGTGFSSLSHIHRLAFDKLKIDKGFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVE 604

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            E   + L  +G    Q  + + PL   
Sbjct: 605 SEAIAEGLKAIGVRLAQGYYFSRPLPLE 632


>gi|331008390|gb|EGH88446.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 533

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/430 (26%), Positives = 212/430 (49%), Gaps = 13/430 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L+ +    + +  V +ID+DK+K IND  G AVGD  
Sbjct: 103 LARHDPLSGLLNRRVFQEQLVARLEQA----SSQTAVFLIDLDKFKLINDTHGHAVGDAA 158

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + E        +ARL G+ FG+ +  +   +++A  A ++   IA   +    
Sbjct: 159 ICAVAESLREATAGWQASVARLGGDEFGLAVSGDFTQVELATLAESVLAKIAAS-SADLP 217

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            + ++A++G A        +  +L++A+ AMY  K+ G      + VS  R  R      
Sbjct: 218 RLALSATLGIAISPLDGSDADTLLQHADSAMYRGKNGGRAMFNFYEVSFEREQRQQELFA 277

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E++++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 278 QELRQAIEHNQIQPFYQPIVNLPEQRLAGFELLARWLHPERGTIMPLDFIPVAEQLGLIK 337

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  + +  + S+  +  +R+
Sbjct: 338 QLTESLLLQAFDQARDWPS-----DFTLSINVTSLMIESVDFPDWLAHVASEGQFPLTRL 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 393 EVEVTENALVANIDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 452

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+ + K++   I A  +  E     L    CD+ Q      PL    
Sbjct: 453 DTSLDNQNEMVKAILALGKSLRMKITAGGVEHEELADWLASHECDFAQGYLFGRPLPLAQ 512

Query: 949 ILKLLKERFP 958
           +  LL    P
Sbjct: 513 VTALLAMAEP 522


>gi|304411963|ref|ZP_07393573.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|307305858|ref|ZP_07585604.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
 gi|304349513|gb|EFM13921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS183]
 gi|306911351|gb|EFN41777.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica BA175]
          Length = 816

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/597 (19%), Positives = 246/597 (41%), Gaps = 21/597 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ Q         + +     R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQASLQQVHERLSRAVKQLNDSELRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   + G  + W   +H +DRD     L  +V  +    +   R+R  +  + W++ 
Sbjct: 288 IGYAPDELAGVFQTWETRLHPDDRDIVLDALQEYVSGKSKEFESVHRLRHREGHYVWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G   R IGI  D++E  K+   I     Q ++TG   +P    F+ RL+ 
Sbjct: 348 RGMLVDWDPQGRPTRMIGIHMDVSESAKNHAAINELVDQ-SVTGRKMLP--DVFMARLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L            ++++++D+   +  +    + + +L  +  R+         + RL 
Sbjct: 405 FLTQ-GNSSGQWGALLLVEVDRLGLVATLNSHEL-ERLLTQVAARLSSYFTENITVGRLE 462

Query: 614 GNRFGIILISENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              F ++         +A          +R+ IA P +       ++A++G     S + 
Sbjct: 463 SGDFVLLAKDLAIDASVAARRALALASELRQVIARPFHYGHHHFELSANVGICLLDSIET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYH 725
              + +++ AELA   AK  G      +             ++++L  A++   + L++ 
Sbjct: 523 LDPALVMRRAELATLSAKRPGQAGCAFYHAEMDLRQSRDEQLQQELQTALQQDSMTLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++     E+V  E L +W       I  +EF+ +AE+  MI  ++ ++ +R+ + I + 
Sbjct: 583 PVMNAHS-ELVSAEVLTRWYRTDGEFIPPAEFVALAEQGGMIAELDFWVAKRVCQFIQTS 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q    P  + +NI+       +  + + AL+ +      ++ +  +E+ ++  P+   
Sbjct: 642 HAQGRSLP-TLTLNISVFSFGQADFVDALVALVKEHGIVAHQLGIELNEAALLMQPQFVA 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
             + +L   GI + LD FG+  S LS L   P   VK + S +          ++++I  
Sbjct: 701 ERVSKLVDAGIGIVLDHFGSGSSALSCLANQPLVAVKLDMSCIDSLAAMPQR-VKALIVS 759

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+     ++AK +      +     GCD  Q    +  L     ++L+  R PL+++
Sbjct: 760 AQQFNLHVVAKGVESPQHYQAFVEFGCDGYQGYLFSRALNQADFIQLVCPR-PLLRS 815


>gi|304398743|ref|ZP_07380614.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pantoea sp. aB]
 gi|304353690|gb|EFM18066.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pantoea sp. aB]
          Length = 709

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/589 (19%), Positives = 230/589 (39%), Gaps = 31/589 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   +         ++  +R       S D +   D+ R      P    + G ++ 
Sbjct: 130 AALVMDRMEMHRLELLRYTSQQRLQAISSTSPDAIVCTDLRRGITFWNPAATALFGYSAE 189

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIR 500
            M G   +    I    + ++R  L                +      D +     +   
Sbjct: 190 EMRGQYVS--ELIPARCQTDYRNELARITSDEAAISHPRSLQIWGVTRDGREFPAEVSFS 247

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                   ++  I    D+T + +S   +   A  D LT + +R +F+D++  +   +  
Sbjct: 248 GWREEGDRLVGMI--IRDVTARYESEARLCELASIDMLTRLASRSAFMDQVGQLTKAA-- 303

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              +  T+++ D+D +K++ND LG A GD +L  +  +I  +       ARL G+ F I+
Sbjct: 304 ---VPYTLLMTDLDGFKEVNDTLGHAAGDALLCHVAEQIRAVCASAVTAARLGGDEFVIL 360

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +    I   A  +  ++  P    +  + V AS G AS+       S ++  A+LA
Sbjct: 361 LAGGSAEAAIT--AERLIAAVQTPFRYHDSPVVVGASTGIASYPEHGRDPSSVMSAADLA 418

Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G      F  +       R   + +L  AV   +  L Y P   +   ++VG 
Sbjct: 419 LYRAKASGKGCSMLFMPAFREAEQQRRRFERELETAVRQQQFTLYYQPRYDVESGKLVGC 478

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W HP  G +  +EF+ +  +  +   +  +++      +  W+     P + + I
Sbjct: 479 ETLVRWQHPTRGLLLPAEFIGMLVKSPLSVTLGEWIIRSALAQVRQWQ--VRAPQLRVSI 536

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE---SVVMGNPERSRLLLGRLRKIG 855
           N+  + L  N L   ++            ++L   E   +V++ +       +  +R+ G
Sbjct: 537 NLFPRQLAGNSLEAVIRE---SAGGDAGFVELEVDEPLLAVLVQDLPV---QVEAVRRTG 590

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
            S  +D +G     ++ L Y      K + SL    +       + RSI  + K++   +
Sbjct: 591 ASFIIDHYGRTLGAINLLRYSFVAGFKIDKSLTHELSSSMRVRMMFRSITALGKSLGIRV 650

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL--KERFPLV 960
            A+ +  +  +  +T  GCD +Q + +  P+       +L  +E +P V
Sbjct: 651 AAEGVEDKEQVAFVTTAGCDIMQGNGLCRPMTPADFETMLCGEEHYPPV 699


>gi|331006667|ref|ZP_08329947.1| GGDEF domain containing protein [gamma proteobacterium IMCC1989]
 gi|330419520|gb|EGG93906.1| GGDEF domain containing protein [gamma proteobacterium IMCC1989]
          Length = 705

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/445 (24%), Positives = 203/445 (45%), Gaps = 15/445 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +K   E ++  A  D LTG+ NRQ+  D L T +     D      ++ +D+D +K++N
Sbjct: 227 AKKYYEEQMVFQANFDLLTGLYNRQNLYDYLYTQIGEYVEDKGNLF-ILFVDLDGFKQVN 285

Query: 581 DVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D +G A+GD +L     R+    K     +ARL G+ F +    EN      D    +  
Sbjct: 286 DSMGHAIGDKILYECAMRLESTAKSQGAYIARLGGDEFVLCFYDEN-KESYHDVCNKIIN 344

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           S    I+     + +  SIG   +   + T    +L NA+ A+  AK  G N    F  +
Sbjct: 345 SFDEKISSQGINVKLACSIGVTLYPDDQSTEPKTLLHNADNALCKAKSSGKNTYYCFDDA 404

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +       IK  L  A+EN    + Y P+I +   EI+G EALI+W   + G +    
Sbjct: 405 TRKEQEFENNIKSKLNDAIENEVFEINYQPLIDIQKNEIIGFEALIRWHDEELGWVRPDI 464

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ- 815
           F+ IAE++ ++  I+ ++ E   + +  WR Q     I + IN +  +   +E  E    
Sbjct: 465 FIAIAEKMGVVFYIDRWVFETAIQQVEEWRSQFRKNYI-LSINFSPSNFYHSEFSEWASK 523

Query: 816 -ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +I +       I+L  +E +V+ +       + +L + G+  ++DDFG   S L Y+ 
Sbjct: 524 DNVIYEKNLD--WIELEVTERLVLNDDPAVLDGINQLCQRGMHFSIDDFGMGYSSLGYIK 581

Query: 875 YIP--FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
                   +K +   +     T+  IA ++SI+ +  +++ T++A+ +  E  +  L  +
Sbjct: 582 KFSHLLSKIKIDRIFINEILETDFDIAFVKSIMMLGDSLQLTVLAEGVEEEGQVDLLRSV 641

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC Y+Q  + + PL  + +   ++ 
Sbjct: 642 GCQYVQGFYFSKPLPIDLMGSFIEN 666


>gi|302382303|ref|YP_003818126.1| diguanylate cyclase/phosphodiesterase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192931|gb|ADL00503.1| diguanylate cyclase/phosphodiesterase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 744

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 211/426 (49%), Gaps = 13/426 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +  +  A+ D LTG+ NR++  +RL   L    +    R  +  ID+D +K++ND+ G 
Sbjct: 299 EQRAVHIAYHDKLTGMGNRRALEERLDR-LFEPGSAGGPRYALHCIDLDNFKEVNDISGH 357

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           AVGD++L    RR+  +    ++  RL G+ F  +L       +   FA  M +++A   
Sbjct: 358 AVGDELLRIAARRLRRIAGSSEMCFRLDGDEFA-VLQPITTGDEAVPFAEQMLQTLAKRY 416

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L     T+T SIG +   ++   + ++L+ A+LA+  AK  G      +  +   + R 
Sbjct: 417 ALSVGRFTLTGSIGTSLQDAADHEAGDLLRRADLALVSAKREGRARFAIYDPAMDETLRR 476

Query: 706 M--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++  L   ++   L++VY P +   D  + G+EAL++WD  ++G +S + F+ +AEE
Sbjct: 477 RRGLQVALRRDLQAGALHMVYQPQVD-RDCTMTGVEALVRWDSDEFGPVSPAVFVPLAEE 535

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             MI+A+  F L R   D + W      P +   +NI++  L D    + + A+ ++T  
Sbjct: 536 CGMIEALGAFTLRRAFEDSLRW------PDLKTAVNISALQLRDPGFPDRILAIAAETGV 589

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SPS I+L  +E V++   + +   L  L+  G S+ +DDFGT  S LSYL   P   +K 
Sbjct: 590 SPSGIELELTEGVLIDRGKGASTRLAALKDAGFSIAIDDFGTGYSSLSYLSRFPIGKIKI 649

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      + A  ++ SI+ + +++   +IA+ +        L  +GC+  Q    +
Sbjct: 650 DRSFVVDMGRSQCADVLVSSILQLGRSLNMRVIAEGVETPDQWLRLAAVGCNEFQGYLAS 709

Query: 942 SPLGFN 947
            P+  +
Sbjct: 710 RPVSAD 715


>gi|296284755|ref|ZP_06862753.1| hypothetical protein CbatJ_14093 [Citromicrobium bathyomarinum
           JL354]
          Length = 560

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/475 (25%), Positives = 222/475 (46%), Gaps = 28/475 (5%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           RY+ + N+I +++++ E     +  D LTG  NR+   +++   L  +  D       ++
Sbjct: 75  RYVDLRNEIEQRREAEEQARHLSQIDPLTGCLNRRCATEKMMNALA-AIGDTQYAAGFVM 133

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLK 629
           ID+D +K+IND  G   GD+VL+ ++RR+  +       ARL G+ F  I+    ++   
Sbjct: 134 IDLDGFKEINDTNGHQAGDEVLLEVSRRLKSMTPPGGDCARLGGDEFAFIMPLVKDDPDS 193

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK------ITSSEMLKNAELAMYH 683
           +  +A  M  +IA PI+     + VT S+G A     +        + ++++ A+LAMY 
Sbjct: 194 LELWACEMTGNIARPIDTEVGSLEVTISVGIAVHRPEEPIENLETAARKLMRRADLAMYQ 253

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G N    F   + +    R  ++  +   +E  E    Y   I L   ++VG E L
Sbjct: 254 AKKEGRNRFCWFDLSMEAEARIRREMETAIRAGLERGEFTPHYEQQIDLETGQLVGFEML 313

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W   + G +S   F+ IAE   +I  ++  ++ R   D  SW      P + + INI+
Sbjct: 314 ARWHSAELGEVSPDIFIPIAENCGLIGPLSEMLIRRALIDAQSW-----SPSLTLSINIS 368

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L D  L + +  L+  + + P R+ +  SE+ +  N    + ++  L+ +G+ ++LD
Sbjct: 369 PVQLRDPWLPQKLLKLLLGSDFPPHRLDVEISEACLQENLGAVQTMIVSLKNLGVRVSLD 428

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLM-------------TGSTEKRIAILRSIIPMAKN 908
           DFGT  S L+ L  +PFD VK + S +               + E++  I+ +++ + + 
Sbjct: 429 DFGTGFSTLTQLRTLPFDRVKIDKSFVGELRRVAQASPELMHNREQQDHIVNTLVSLGQG 488

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           ++  I A+ I     ++ L  MG    Q      P    +++K L E   L KN 
Sbjct: 489 LQIPITAEGIEDASILETLRGMGEMKGQGYLYGKPEDAAAVVKRLGELDLLAKNA 543


>gi|268609910|ref|ZP_06143637.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ruminococcus flavefaciens FD-1]
          Length = 574

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 213/477 (44%), Gaps = 19/477 (3%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIAN---DITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               M   +  +    G++L  + I     +  E       +   A  D LTG+PNR + 
Sbjct: 101 SVIIMHHNLNNLPGVFGNLLTLVTIIIIYFNNKELDAYQVRVRDQAVTDRLTGLPNRFAC 160

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP- 606
            + +  +     T ++ R  V+ IDI+ +K IN  +G   G++VL+ +  R   +     
Sbjct: 161 SELIEEL-----TKNDERFAVVSIDINGFKSINSSMGFEAGNEVLIEIASRWKAIADTGI 215

Query: 607 ----DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
               D + R SG+ F +I+ + ++   I +       ++   + +   +  +TAS G++ 
Sbjct: 216 SGTLDFITRTSGDEFVLIIRNYHSDEDIINTIRQYEAALKNRLTIDNCDFYITASFGYSE 275

Query: 663 WTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           +         +   A+ A++  K    G + +            + I+  +  A+E   +
Sbjct: 276 YPVDAGRGDSVFAYADAALHEVKRANSGDHILRFTPDLLKIERTIEIEGKIREALEKDTI 335

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           +    P   + D ++ G EAL +       NI+  EF+ +AE++ +I  ++  +  +   
Sbjct: 336 FFNLQPQFDM-DHKLRGFEALARMKDENGENINPGEFIPVAEKVGLIDKVDSAVFRKATS 394

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                 ++     + + IN + + L+ N   + ++ L+  +  SP ++++  +ES+++ +
Sbjct: 395 FFGELLEKTGA-DLTLSINASVRHLMKNSFIDEVRELLESSGISPDKLEIEITESIMIDS 453

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAI 898
            +++   +  L+K+G+ L +DDFGT  S LSYL   P + +K + S +    ST+     
Sbjct: 454 ADKALKCISELQKMGVKLAIDDFGTGYSSLSYLNSFPANMLKIDKSFIDKMNSTDSSRQY 513

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +II +   +   +I++ +  +  +  L  +GCDYIQ      PL      +L+ +
Sbjct: 514 VAAIISIGHIMGFEVISEGVEEDAQLTTLRTIGCDYIQGFLWGRPLSQQEAEELVMQ 570


>gi|24372219|ref|NP_716261.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24346134|gb|AAN53706.1|AE015509_11 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 728

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/579 (19%), Positives = 231/579 (39%), Gaps = 31/579 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                 +I   +     +  + +   +               D     +         L 
Sbjct: 156 FQHAAVMIGSAMELTRIAHDMLASENKYREVFNQLPLACALLDKQNQLMMLNKIALQTLP 215

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +  G       +    +   +       L        G+   E  +++      W+ +  
Sbjct: 216 VQHG------YDLFSMVREEEHAMLTDTLHMVREGVLGQAWCELPLKSQH-HLDWLRLSF 268

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +      +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L    
Sbjct: 269 SQIYGDKDTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---H 322

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             D++   V  ID+D+++ IN++ G   GD +L  L  R+ +L++  DI+ARL G+ FG 
Sbjct: 323 AKDDMPTCVAFIDVDQFQVINNISGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG- 381

Query: 620 ILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           IL+   N       A  +   +A        R   V+ S+G A +  S      ++ +A+
Sbjct: 382 ILMHYCNVDSAQHIAKRICTQLATHEFIWENRCHNVSVSMGIAKFNRSASDIYAVMSHAD 441

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEE 734
            A   AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L  +E
Sbjct: 442 AACRLAKDKGRNGWHLYSTKDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLNYDE 501

Query: 735 I-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR----DIISWRDQA 789
             + LE L++   P    +S + F+  AE   +   I+L++++ + +     +  W+   
Sbjct: 502 SGLHLEVLLRMVQPNGNIVSPAIFLPAAERYNLAAKIDLWVIDNLLKWGSNHLAIWQQLG 561

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                 + +N+++  L D+E    ++  +        ++ +  +E+  +   +++  L+ 
Sbjct: 562 L-----VSVNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIE 616

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAK 907
            LR +   L LDDFG   S  +YL  +  D VK +G  +    E     AI+++I  + +
Sbjct: 617 VLRPLNCQLALDDFGAGFSSFAYLKRLNVDYVKIDGQFVINLCEDGADQAIVKAICQLGQ 676

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           ++   ++A+ +       +L  +G DY Q   +  P   
Sbjct: 677 DMGFDVVAEFVESTEIGLKLKSLGVDYAQGYAINKPTPL 715


>gi|90020809|ref|YP_526636.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950409|gb|ABD80424.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 587

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 233/592 (39%), Gaps = 23/592 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYF---SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +V+ ++    +++ ++L T      +Q I    +  +L +  +       D         
Sbjct: 8   IVIALLAAFASLMAYMLFTKKAPEDNQPITDTTDPFALYLGNAVCGAVVLDASLKIAQIN 67

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +   LGL   ++ G +  +  +I   D+      L +           +  +  A+N+
Sbjct: 68  TVLCEYLGLTPAAVIGTL--FSKHIASADQA-IWQELTAHSDASGST--AQIALLTANNK 122

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
                + ++ +  +       +    +  +  +    I      D LTG+ NR++    L
Sbjct: 123 QIQGKLSLQAIPANQ----ELLVTFENQHQLLQYATEIEYRKTHDELTGLNNRKALEAYL 178

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               + S +  +    ++ I++D+ K +ND  G   GD++L  L   +       D LAR
Sbjct: 179 NKTFE-SQSLFSKPIAMIYINVDQLKVVNDTCGHIAGDELLKQLVHILKNTDVTYDYLAR 237

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITS 670
           + G+ F  ++  +    +  + A  +R ++     +  ++    + SIG A  +    T 
Sbjct: 238 VGGDEFA-LIKEDATIEQAEEVAEIIRSTVEDISFSWDDKNFRQSLSIGVALSSPRLCTI 296

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHP 726
           +E++  A+ A   AK  G N V   +     S     ++     +  A       L + P
Sbjct: 297 TEIIGAADAACEQAKVAGKNRVHVHKDTRAASEDSRHQMRWVSRIQQAFIEDRFELFFQP 356

Query: 727 IIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           I+     ++ V  E LI++       +S + F+  AE+  +   I+L++L      + S 
Sbjct: 357 IVALHHSDQYVHYELLIRYRDENNRFVSPNAFLPAAEKYGLSTQIDLWVLTTALDFLASN 416

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            +          IN+++  L  ++    +  LI    + P ++    +E+  + N + + 
Sbjct: 417 PEHTYKLQC-CSINLSAHSLSSHQTRSAIAQLIIGCGFPPEKVCFEITETSAIKNLDEAT 475

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
             +  ++ IG    LDDFGT  S L YL  +  D +K +G+ +          A++ ++ 
Sbjct: 476 AFIEEMKLIGCRFALDDFGTGFSSLGYLKSLNVDYLKIDGAFIRNIVHDKIDHAMVTAVA 535

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + K +    IA+ +  E     L++M  DY Q    A P+  N  +    +
Sbjct: 536 SIGKEMNIATIAEFVENEEIKSTLSQMAVDYGQGFGFAKPMPLNDAVAYYNK 587


>gi|254787140|ref|YP_003074569.1| diguanylate cyclase/phosphodiesterase signal transduction peptide
           [Teredinibacter turnerae T7901]
 gi|237684117|gb|ACR11381.1| putative diguanylate cyclase/phosphodiesterase signal transduction
           peptide [Teredinibacter turnerae T7901]
          Length = 744

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 209/471 (44%), Gaps = 14/471 (2%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                 +     +   +  +L        I+ +    +E +   A+ D   G+PNR + +
Sbjct: 282 GDMSCFVSSDTQVDEVDQALLELFCTNISISADNLALVEQLRSYAYVDEQVGLPNRNALI 341

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             +   +     D ++   + +++ID + ++N  L    GD +L ++   +      P +
Sbjct: 342 QAIDEEIAQGRRDKSV---LALVNIDNFAEMNASLSQRYGDQLLKAVGDHLRSSFSPPTM 398

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           LAR+ G+ F I         +    A ++  +      +      ++ + G      ++ 
Sbjct: 399 LARIGGDTFAIF------GHESVVGAESVAAAFNTAFTVEGDAQLISVTSGCVPLREAEG 452

Query: 669 TSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
            +  ++K+A + +  AK  +RGG              R+ + ++L  A +  +L+L+Y P
Sbjct: 453 NAISVIKDANIVLKAAKVSNRGGVLQFDRYSLEQAKGRLELLKNLRAAFDQEQLFLMYQP 512

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I +     +G+EAL++W  P    +S   F+ +AE+  +I  +  ++L     ++ S  
Sbjct: 513 KIDIQTGNTIGVEALVRWPLPNGDLVSPGVFIPLAEQSGLIIRLGEWILRTALTELRSLN 572

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           +    P + + +N++   L    L + ++A++S T   PS + L  +ES+ M + ER   
Sbjct: 573 E-NGWPRLEMGVNLSVAQLQHPALMDMLKAVLSDTGVDPSSVDLEITESIAMRDMERKSQ 631

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPM 905
           L+  ++ +G  +++DDFGT  S L+YL  +P D +K + + +    E     I+  I+ +
Sbjct: 632 LISEIKALGFKVSVDDFGTGFSSLNYLQKMPVDCLKIDQTFVHAVNEGNGRDIVELIVTL 691

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + +   +IA+ +  E     ++ +GCD +Q    A P+    +   L  R
Sbjct: 692 GRKLNMRVIAEGVETEAQANTVSELGCDEVQGYFFAHPMTREQLHDWLATR 742


>gi|326317167|ref|YP_004234839.1| diguanylate cyclase/phosphodiesterase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374003|gb|ADX46272.1| diguanylate cyclase/phosphodiesterase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 749

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/432 (25%), Positives = 205/432 (47%), Gaps = 14/432 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D L  +PNR  F++++   +      D++   + +IDID +   NDV+G   GD +L
Sbjct: 320 AYYDPLVRLPNRAHFVEKVDDCVRRGGAQDHI---LALIDIDDFSAANDVMGHTFGDRLL 376

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            +  RR+ + L    +LAR+  + FG++                + + +  P  +     
Sbjct: 377 EAAARRLADALPPGVLLARVGSDTFGVL------GEARLVALPQLLQCMQPPPVVDGVPQ 430

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKED 710
            V+ + G+    S     ++++K+A +A+  AK         +   +     DR M+  D
Sbjct: 431 KVSLTCGYVHLPSGAQAGADLVKDATIALKRAKRDHRGQHLQYLEHMGREARDRAMLLSD 490

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A++ ++L+LVY P + L    +VG+EAL++W  P    +S  +F+ IAE   +I  +
Sbjct: 491 LRAAIDEAQLFLVYQPQLHLGTGALVGMEALLRWRLPDGRFVSPDDFIPIAEHSGLIAPL 550

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L    + +     +   PP  I +N++   L D    + ++A ++ +    S+++L
Sbjct: 551 GQWVLSTACQSLSDLAREGLAPP-HISVNVSVVQLQDPAFPDAVRAALAASGLHGSQLEL 609

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV +   +  +  L  LR  G+S+ +DDFGT  S LSYL  +P D +K + S +  
Sbjct: 610 EITESVAVVPTQLLQSTLASLRAHGVSIAIDDFGTGYSSLSYLERLPLDRIKIDRSFVRR 669

Query: 891 -STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  +   I   I+ +   +   ++A+ I      + L RMGCD  Q  H+A P+    +
Sbjct: 670 PTGAQGGRIAEMIVRLGHQLGLRVMAEGIEDAATWESLLRMGCDEGQGYHIAVPMDLQQL 729

Query: 950 LKLLKERFPLVK 961
              L  R P  +
Sbjct: 730 RAWLAAR-PAAR 740


>gi|209547837|ref|YP_002279754.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533593|gb|ACI53528.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 653

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 206/456 (45%), Gaps = 19/456 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G+     E K+               A QD LTG+ NR+SF   L   L     D +
Sbjct: 193 NFVGLVQLTEELKQKRAEAEELNLVNSRNALQDQLTGLANRRSFFLSLEKRL---QKDPS 249

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             P + ++D+D +K +NDV G A GD VL    RR   L+    I++RL G+ FGII   
Sbjct: 250 APPVLGILDLDGFKPVNDVFGHAAGDLVLKETARRFAALVGEAGIVSRLGGDEFGIIFPC 309

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 IAD   A+  ++  P  + +  + V  S G       + T+ ++ + A+ A+Y 
Sbjct: 310 SMTRQAIADLGQALCAAVRDPYEIPDGSVRVFGSCGIVYPEIGRYTAEDLYEKADFALYQ 369

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K +  + VE F     +       I+ +L      SEL L Y PI+ L    +VG EAL
Sbjct: 370 VKSKRSSGVEFFSAEHEKILTQRHLIELELQANDFASELKLEYQPIVELKSGRVVGYEAL 429

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +WD  ++G IS   F+  AE   +I  +   +  +    +           + +  N++
Sbjct: 430 ARWDSARFGRISPEAFIPAAERTAVIGRMTRILFAKALEALAIIPRH-----LKLSFNLS 484

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+ D+E    +  +I+++   P RI+   +E+ ++ + + +  ++  LR  GIS+ LD
Sbjct: 485 ARDICDHETSMALLGMITRSGIDPRRIEFEITETALLSDFDTADKVIAMLRAAGISIALD 544

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS++  + FD +K + + +           I RS+  + +N+    +A+ + 
Sbjct: 545 DFGTGYSSLSHIHRLGFDKLKIDKAFVMNFDRDARCMNITRSVANLCQNLGIASVAEGVE 604

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E   + L  MG    Q  H + PL     +     
Sbjct: 605 SEGIAEGLKAMGVRLAQGYHFSRPLPLELAIDYAAR 640


>gi|85713252|ref|ZP_01044277.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Idiomarina baltica OS145]
 gi|85692921|gb|EAQ30894.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Idiomarina baltica OS145]
          Length = 759

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/630 (20%), Positives = 255/630 (40%), Gaps = 41/630 (6%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           + AW  +            K L N  I   L    +L+   +  ++         F+Q +
Sbjct: 154 LIAWATLGFEVNNTLTEQLKELANADITLWLEQPSLLLASSLPASL------REGFAQAL 207

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVR---DRVTTT---PDIATILGLA----SGSMHGPIR 450
            S+ +     +  SG  + +  +     D V  +        +           + G I 
Sbjct: 208 SSEQQGYDGWLQQSGLALQETTLTTVGGDVVHVSLTTSRAEAMRQFDELLVQILLIGAIA 267

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +  I         +   + +     +L            +    ++ R   +  G + 
Sbjct: 268 LVITLIVALFVAKTISTPVALLSQAASKL--------KSGDYSPTNLQSR--KDEFGQLA 317

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
                       ++    +   A  D LT +PNR+     L  +L+    D      +++
Sbjct: 318 DTFESMRSAIALRE--RKVRFQATHDQLTELPNRR----ELQRLLNEKLGDSASSGWLLL 371

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           I+I  ++++ND +G  +GDDVL  L  R+    +  DILAR  G+ F ++   E    +I
Sbjct: 372 INIRNFRRLNDSVGQRMGDDVLKQLAGRLLSGCQSNDILARFGGDEFALVTEGET-ESRI 430

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           A     +   + +P  +   +  +  + G   + +       +++ A++++ HAK     
Sbjct: 431 ARRLEDLSVRLNVPFVVGGSQFELKFNCGAVQFPNHATELDSLIRRAQVSVKHAKEHNQF 490

Query: 691 H-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +             R+ I E L  A+      LV  P +R  D   V  E LI+W   + 
Sbjct: 491 NAFYQEGFDEAHLRRLAIVEQLPKAIARGSFTLVAQPKVRATDGRTVAAEMLIRWHDEQL 550

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ +AE+  MI  I  +++E+  + +   R       I + INI++ DL++++
Sbjct: 551 GWVGPDEFIPLAEQSGMITEITHWVVEQAEQWVNQLR--TFEDDIKLSINISAVDLINDK 608

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   + AL  +       + L  +ES +M  PE+S   L  L ++G  +++DD+GT  S 
Sbjct: 609 LANDLVALSQRN--MQRYLILEVTESALMNEPEKSIACLKMLSELGYEISIDDYGTGYSS 666

Query: 870 LSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS +  +P + +K + + +    +     +I+RS I +A  +   ++A+ +  E     L
Sbjct: 667 LSQIRRLPINELKIDRAFIQYLMTQPDDQSIVRSTIQLAHELNLRVVAEGVEDEASWHWL 726

Query: 928 TRMGCDYIQDSHVASPLGFNSI-LKLLKER 956
               CD +Q  + + P+ F  + L+LLKE+
Sbjct: 727 LANHCDVLQGYYFSKPISFEELHLRLLKEK 756


>gi|308094578|ref|ZP_05890144.2| cyclic diguanylate phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|308095216|ref|ZP_05904057.2| cyclic diguanylate phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308125966|ref|ZP_05778417.2| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|308126576|ref|ZP_05910981.2| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308088605|gb|EFO38300.1| cyclic diguanylate phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089932|gb|EFO39627.1| cyclic diguanylate phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|308109682|gb|EFO47222.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308113416|gb|EFO50956.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 829

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 197/434 (45%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D+LT + +RQ  ++            +    ++ ++ I+K++ I
Sbjct: 395 SNLKASFKALRDQLVYDSLTRLYSRQGLIEICEN------KPNLCHGSLFLLGINKFRDI 448

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +LVS+  R+ +      +LAR+ G+ F + +   +    I      +++
Sbjct: 449 NDSVGHHNGDQLLVSIAERLKQQFPDNTMLARIGGDEFALFMPDMDKDEDIRLTERRLQQ 508

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRV 697
             A P  +    + +  S+G    T         L+NA +A+ +AK     G    S  +
Sbjct: 509 LFAAPFMVEGESVVMKISLGIVQ-TKHGENMPLWLRNASIALSYAKQDPLTGICYYSPEL 567

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S    R  +   +   ++  E    Y PII L    + G EAL +W+    G IS  +F
Sbjct: 568 ASASKFRTQLLTKMQTGIDKREFVPHYQPIIDLASGNVCGAEALARWNSES-GMISPLDF 626

Query: 758 MLIAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +  RD   +  ++       + +NI+   L      + +  
Sbjct: 627 IPIAEESGMIKAIGQQILLQACRDTYKAIENKQWPSDFQLHVNISVNQLSCPAFVDTVTR 686

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T      + L  +ES ++ +   +   + +LR +GI + +DDFGT  S L YL  +
Sbjct: 687 VLDVTKLPAKNLTLEITESRIIDSAPTTLENMMKLRDMGIGIAIDDFGTGYSSLGYLHSL 746

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC  
Sbjct: 747 PFTCLKIDRTFINQLTKENLDSSVVAAVINITAGLKTNVVAEGVEDSTQAQLLRSLGCHQ 806

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+  + 
Sbjct: 807 VQGFYYSRPIPLDE 820


>gi|330958634|gb|EGH58894.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 533

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 211/426 (49%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L  +    +++  V +ID+DK+K IND  G AVGD  
Sbjct: 103 LARHDPLSGLLNRRVFHEQLVARLQQA----SVQTAVFLIDLDKFKLINDTHGHAVGDAA 158

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + E        +ARL G+ FG+ +  + + +++A  A ++  +IA     L R
Sbjct: 159 ICAVADSLREATMGWQASVARLGGDEFGLAVSGDFSQIELATLAESVLANIAASSACLPR 218

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            +T++A++G A        +  +L+ A+ AMY  K+ G      + VS  R  R      
Sbjct: 219 -MTLSATLGVAISPLDGSDAEILLQRADSAMYRGKNSGRATFHFYEVSYEREQRQQELFA 277

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+    +   Y PI+ L D+ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 278 QELRYAIAEKHIQPFYQPIVSLPDQRLAGFELLARWLHPERGIILPLDFIPVAEQLGLIK 337

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  + ++ L  +  +  +R+
Sbjct: 338 QLTESLLLQAFDQAREWPS-----DFTLSINVTSLMIESLDFPDWLEQLAREGNFPLNRL 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 393 EVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 452

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 453 DASLDNQNEMIKAILALGKSLRMKITAEGVEHEELADWLATHECDFAQGYLFGRPLPLAQ 512

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 513 VTALLA 518


>gi|254559690|ref|YP_003066785.1| diguanylate cyclase/phosphodiesterase [Methylobacterium extorquens
           DM4]
 gi|254266968|emb|CAX22768.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL
           domains [Methylobacterium extorquens DM4]
          Length = 668

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 205/434 (47%), Gaps = 14/434 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LTG+ NR  F+ R    L            +M++D+D +K +NDV G +
Sbjct: 232 EEMRERATHDGLTGLLNRAGFIQRAEEQLAA-----GASVCLMLLDLDGFKSVNDVYGHS 286

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  + RRI   +      ARL G+ F ++  +       A  A  + +++A P  
Sbjct: 287 TGDRVLAEVARRIRVAVPVDCDAARLGGDEFALVYDTARVIESPAALAERLIRTVAQPFE 346

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
             +    +  SIG     S  +T   +L  A+ A+Y AKH G NH   F    S+    R
Sbjct: 347 SFDTG-RLGMSIGICHRPSDSLT--HLLSCADEALYAAKHSGRNHFRLFDDGLSTRLEMR 403

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              + DL  A+   EL + + PI       +  LEAL++W HP  G +  ++ +  A   
Sbjct: 404 RDCERDLSQALAEGELEVWFQPIFGPDGRSVTNLEALVRWHHPVHGWVPPADLISAAAMA 463

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            + +++  F+LE++   + + R    +  + + +N++ +++    + E +   +      
Sbjct: 464 GLTESLLRFILEQVCAMLCALR-TRGLHDLSVAMNVSPREMAQIAVDEIVLGRLRVLGLP 522

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + +++  +E   + + E  +  L  L + GI + LDDFGT  S L+ +  +  D VK +
Sbjct: 523 ATALEIEITEETAL-DIEAVQGKLLALSRAGIRMALDDFGTGYSSLASVRQLRADRVKID 581

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+TG +E   +  ++++++ + + +   ++A+ I    D+  L  MGC ++Q  ++  
Sbjct: 582 RSLVTGLSEAEDKRGLVQAVLGLGRALGLEVVAEGIETAEDLATLQAMGCPFMQGYYLGR 641

Query: 943 PLGFNSILKLLKER 956
           P   + IL+ L  R
Sbjct: 642 PQPRDDILRFLDAR 655


>gi|218676525|ref|YP_002395344.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324793|emb|CAV26484.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 635

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/444 (23%), Positives = 191/444 (43%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++ + + I      D  TG  NR +F  RL   L            V+ I     
Sbjct: 187 QEIDKRRAAEQEINFQKNHDLGTGFLNRSAFESRLDQKLLSQQRFTGGSLAVIHIGFTNG 246

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G    D VLV   +RI  +     + AR +     +    ++   +I +    
Sbjct: 247 RRIQARYGYNALDQVLVEYRQRIDSISDIEVLTARPTSVDLVLAFSVKDLHQRIEELCQT 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + K      ++   ++ + A IG A  T +   +  +++ +  AM   K  G      S 
Sbjct: 307 LVKVGHSEFDIGSDKVHLHAFIGIA-ITDNDDGADSIIQKSSEAMLACKDSGQKFAYYSQ 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +S    I+  L  AV N +L L + P +  +    VG EAL++W HP  G+IS+ 
Sbjct: 366 SHAEEQSHINKIEGYLLQAVRNDDLMLYFQPKVCPLTHRWVGAEALLRWRHPVLGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F L         W +   +    I +N+++  L + +  + + 
Sbjct: 426 TLIHMAEQNGLIFEVGNFALRNAIEQAKEWSE--YVEDFKIAVNVSAIQLKNVDFADQII 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+      P  ++L  +ES ++ +   ++  L  L  IG++L+LDDFGT  +  SYL  
Sbjct: 484 HLLETYHLEPHFLELEVTESCLIADEVVAKNTLESLHNIGVTLSLDDFGTGYASFSYLKK 543

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFDT+K + S +     +++   I+RSI+ +AK ++  +  + I  E+  + +   GCD
Sbjct: 544 FPFDTIKIDKSFIDQMLNSQEDSEIVRSIVQIAKKLDLKVTIEGIESEVQEQFIINEGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+        L  + 
Sbjct: 604 VGQGYLYGKPMPSQEFEHSLINQN 627


>gi|254522554|ref|ZP_05134609.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor
           [Stenotrophomonas sp. SKA14]
 gi|219720145|gb|EED38670.1| diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor
           [Stenotrophomonas sp. SKA14]
          Length = 1001

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/730 (16%), Positives = 262/730 (35%), Gaps = 39/730 (5%)

Query: 245 LPSGELLIWRACSEIALSSS-LIIFLFMYLHWNRWHAKVGYITFSGIACI-----AILFC 298
           L      +  + + +    + L++ L+      R    +     +G A +         C
Sbjct: 289 LAPWWPYLQASIAIVLAYIAVLLVLLYAVRRTTRRQQSMAEELKAGHAELRLAHQVGRVC 348

Query: 299 MSFYYPMVTAS----IARITLASIVLYYTYFIIYHGMKGYERAVL---LIPAWILIFIWF 351
             +            +AR               +  +   + A L      A+    +  
Sbjct: 349 TWYVDEDAALLRWSPLAREIFGVQTDALPVADFFARVHRDDAARLQQAFDQAFAGGAVLD 408

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
               + +       +        +      +    +  +       + +     R  L  
Sbjct: 409 QVFRLVLPGGEVRWVGARGQRVEVDDSERRM-IGALTDLSERYQAREQMSEVERRFRLLF 467

Query: 412 LGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
             +    W +D      +          G +         + L        D  +  +  
Sbjct: 468 DRNPAPFWVFDPDTLRFIEVNDAAVRQYGYSREEFL--AMSILDIRPREGWDEVKGAIAK 525

Query: 471 FVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
                        R+ R  D     +   +  + + +G     + +A D++E+      +
Sbjct: 526 ARVGELQ--DATVRLHRRKDGSVFEVRAHLSKL-DFDGQPACLV-LAEDVSERLAYERDL 581

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  +  TG+ N ++  ++L               T+  + +   + + D LG  +GD
Sbjct: 582 AYQARHNPATGLLNVRALTEQLDE--------QQEGYTIAFVQLRGLQLVADTLGREIGD 633

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL S+  R+G L      LA      F   + + +++ ++ D    + + ++ P+   +
Sbjct: 634 AVLQSMATRLGGLGARCGTLAFQPAEDFVFAIGTGHDTQRVLD---DLLQIVSAPMRGKD 690

Query: 650 REITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMI 707
                   IG A        ++ +++  A  A + A+  G         V++  +DR+ +
Sbjct: 691 SLHQFEPRIGVAVHVPGDGHSAEQVIGMAAQAAHAARAEGNVVVWFDAAVTTRLADRLRL 750

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +  A++N E  L + PI    D   V LEAL++W       I  +EF+ + EE  +I
Sbjct: 751 AGRIHAAIDN-EFQLYFQPIRHAGDGSPVALEALLRWPQADGSFIPPNEFIQLCEETGLI 809

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+  +++   A+      +      + I +N+++    +++L         +   +   
Sbjct: 810 LALGRWVIRAAAKAQRRLVEAGWGE-LPIAVNVSAVQFFNSDLVAEFTRAQQEFGLARGA 868

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +ES +M  P ++   + RL + GIS++LDDFGT  S +SYL ++P D +K + S 
Sbjct: 869 LHVELTESSLMRKPAQAMQTMQRLHEQGISVSLDDFGTGYSSMSYLQHLPLDILKIDRSF 928

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    +  +  +I R+++ +  ++  TIIA+ +     +  L   GCD +Q   +  P  
Sbjct: 929 VADVETNPRNASICRALLSLGHSMGLTIIAEGVETPGQLDWLAAHGCDQVQGYLLGRPAP 988

Query: 946 FNSILKLLKE 955
              I+  L E
Sbjct: 989 LEQIIDALDE 998


>gi|307294081|ref|ZP_07573925.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
 gi|306880232|gb|EFN11449.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
          Length = 558

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/458 (25%), Positives = 217/458 (47%), Gaps = 31/458 (6%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + + +  ++ + +LE +   A  D +TG+ NR SF  ++  +L      +     +  ID
Sbjct: 100 VAMESLFSQVRTNLEHVQELALFDPVTGLANRASFCRQVERMLGE--RSEEGLAALFFID 157

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-------FPDILARLSGNRFGIILISEN 625
           +D +K +ND LG A GD +L  +  R+ E+            ++ RL+G+ F + + +  
Sbjct: 158 LDGFKSVNDTLGHAAGDQLLARVAGRLREVAMAQASAGAGDCLIGRLAGDEFTLFVPAMP 217

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +       A A++ ++    +L  + + + ASIG A + +   T S +L++A++AMYHAK
Sbjct: 218 DLDTACRIARAIQFALGERFDLGSQHVDLGASIGIACYPAHGDTLSALLRSADIAMYHAK 277

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           H+G N  E F        +DR  ++ DL L ++  E  L + P I ++    +G+EAL++
Sbjct: 278 HQGRNRAEMFTTELALEAADRAELERDLLLGLQRDEFLLEFQPQIEIVSGRAIGVEALVR 337

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+   +    F+ +AEE   I A+  +++ R+      W     M    I INI+S+
Sbjct: 338 WVHPERDLVMPGSFVPVAEESGAIVALGDWVMGRVCETAARWARAGVMQ--RIAINISSR 395

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           +L   +    ++  +       + ++L  +ES+ M    ++   L  LR+ G+ + +DDF
Sbjct: 396 ELAQADFFLRLRHAMDAHQTPAAMLELEITESLAMDMKAQTLDQLSALRRDGVRVAIDDF 455

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET--------TI 913
           GT  S LS L  +P D VK + SL+     + +   I  +++ + + +          T 
Sbjct: 456 GTGYSNLSRLRELPVDRVKIDRSLVRDIAVSAEARTICSAVVGLIQGLGMEVVVEGVET- 514

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  E  +  L  +GC   Q  H+A P G    L 
Sbjct: 515 -------EAQMDMLRVIGCTLFQGYHLARPTGEADYLA 545


>gi|108798585|ref|YP_638782.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119867685|ref|YP_937637.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126434184|ref|YP_001069875.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
 gi|108769004|gb|ABG07726.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. MCS]
 gi|119693774|gb|ABL90847.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. KMS]
 gi|126233984|gb|ABN97384.1| diguanylate cyclase/phosphodiesterase [Mycobacterium sp. JLS]
          Length = 781

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 202/440 (45%), Gaps = 20/440 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  ++   +      D LTG+PNR  F  RL   +       + +  ++ +DID +K++N
Sbjct: 348 QLYEAQRRLAHQVHHDPLTGLPNRVLFAKRLDEAM------HDGKFVLIFVDIDDFKEVN 401

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GDD+L ++  R+   +   D LAR+ G+ F I++  E+++ ++   A  +R +
Sbjct: 402 DQFGHAAGDDLLCAVGERLRRCVGPSDTLARIGGDEFAILVEGEHDAPEV--VADKLRVA 459

Query: 641 IAMPINLLEREITVTASIGFA--SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +  P  +    + V AS+G    S      TS ++L+ A+++MY  K  G +    +R S
Sbjct: 460 LRDPFAVHGSSVRVRASMGLVRPSVDEPNPTSDDLLRQADISMYAGKRLGKDTAVVYRPS 519

Query: 699 SFRSDRVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           S  S        L  A         L Y P++ L     V +EAL +W  P    IS   
Sbjct: 520 SGVSVDFP--SALRQADGGVPKGFTLAYQPVVTLPHAAPVAVEALARWTAPNGMQISPET 577

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +  A++  +L+   R++     +A    + + +NI +  L +    + +  
Sbjct: 578 FVAVAEGAGLGGALDAMVLDLACREM-----EAAGLDVALHVNIGAARLGNRGFEQQVVR 632

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +    P R+ L  +E+V + +  +    + RLR  G+ + LDDFG   + L+YL  +
Sbjct: 633 TLERHGIEPERLVLEITETVPIVDLAKGAAAIRRLRSFGVQVALDDFGAGFNSLNYLHAL 692

Query: 877 PFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P D VK + SL+ G    R  A+ RS+I +   +   +IA+ I        +   GC   
Sbjct: 693 PIDVVKLDRSLVVGGEPDRDVALYRSVIGLCDALGLDVIAEGIEYPEQADTVFAAGCRMA 752

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q       +  + + ++L  
Sbjct: 753 QGHLFGRAVPLSELGRVLSA 772


>gi|237735800|ref|ZP_04566281.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381545|gb|EEO31636.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 1227

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/518 (22%), Positives = 224/518 (43%), Gaps = 31/518 (5%)

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYE------FRVRAADNQFHWMIIRIRPMSNSNG 507
             IH +D DNF    D    +              FR +  D ++ W++  +  + NS  
Sbjct: 158 EMIHPDDHDNFLNFWDLPKLHETFSSNQHQILKGYFRKKKTDGKYCWVLQTVVAIENSQM 217

Query: 508 DILRYIGIANDITE---QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           +    +    +I E    ++  +    N     LTG+    SF      +L    TD + 
Sbjct: 218 NDEIIMCFIQEINEPPTFQQLPDKKQFN----ELTGLYQTNSFFQIADNLL---KTDTSH 270

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILIS 623
           +  ++ IDI+ +K  N+  GIA GD  L ++ + +  + +    I   L G+ F +++  
Sbjct: 271 QYCMVAIDIEHFKLFNEWYGIAAGDLFLRAIAKELKTISQQLRGIAGYLLGDDFALLIPY 330

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            NN  K+      +   +   I   + +I    ++G        + S  +   A +A+  
Sbjct: 331 HNNHTKM------ILDKLMHYIEEFQDKIGFYPALGVCLVDDRNMPSQTIYDRAVIALTS 384

Query: 684 AKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K      +  ++            +  D   A+EN+E      P   +   +IVG EAL
Sbjct: 385 IKGNYAKRIAYYQDKMQLQMEEEHKLLLDFQNAIENNEFTFYAQPKCNIQTGKIVGAEAL 444

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HPK G I  +EF+ I E+  +I  ++ ++ + + + +  W D      I I +N++
Sbjct: 445 VRWQHPKKGIIPPNEFIPILEKNGLIGKMDYYIWDCVYKHLRKWID-NGHKAIPISVNVS 503

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D+   ++ +  + L++K   + + I++  +ES  +   ++ + ++  LR+ G  +++D
Sbjct: 504 RIDMFTLDVVKCFKDLVNKYQINHNLIEIEITESAYVEEYDKVKTIIKELRQEGFLVSMD 563

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAKD 917
           DFG+  S L+ L  I  D +K + + +    E+       IL +II MAK +   +IA+ 
Sbjct: 564 DFGSGYSSLNMLKDINVDVLKIDMNFL-NMNEQSSDKGIGILEAIINMAKLMGLRVIAEG 622

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I     ++ L  +GC Y Q  +   P+       ++K 
Sbjct: 623 IESSQQVELLLDLGCLYAQGYYFYKPMTSKQFEAIIKN 660



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 428 VTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
                 +  +LG  +            +  IH +DR+     + S   Y        +R+
Sbjct: 868 FFANDALVKLLGYETYEEFAIAIKEQVINTIHPDDREQVAKDIGSNY-YSGLEYTTTYRM 926

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              D  + W + + + +   +G +   +    DI+E   + +     A  
Sbjct: 927 PKKDGTWFWTLDKGKVIETEDGRLA-IVSACIDISETIAAQQK---LAKH 972



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 426  DRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D +  +             +     + ++  IH +DR       ++ +  +      E+R
Sbjct: 1004 DFIHISNRFLEFFNYTRQEIKELFNDKFINMIHPDDRAKAVRTTEN-LSQQDESFDLEYR 1062

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            + A D  + W+I +   +         + G+  ++T+  +    +   
Sbjct: 1063 MLAKDG-YIWVIDQTSVL--EYNGTRFFQGVVTNVTKNIELRNQMQLL 1107



 Score = 41.9 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 415 GDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           G   +++D    + +    +   I+  +   +       L  I+  D+  F  + +    
Sbjct: 699 GIAFFEFDGHNIELLNVNQNYCKIVDESGVDVEEKRLKILENIYEPDQTIFLDLFEQATV 758

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           +     + + R   A   + W+ I +  +   +   L Y    +DITEQKK  + + 
Sbjct: 759 HLINGTKGQIRYLTAKGTYKWLNIYLFLLKKLDHSNLYY-AQVSDITEQKKKEKQLE 814


>gi|28896891|ref|NP_796496.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28805099|dbj|BAC58380.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 848

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/434 (22%), Positives = 197/434 (45%), Gaps = 13/434 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K S + +      D+LT + +RQ  ++            +    ++ ++ I+K++ I
Sbjct: 414 SNLKASFKALRDQLVYDSLTRLYSRQGLIEICEN------KPNLCHGSLFLLGINKFRDI 467

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +LVS+  R+ +      +LAR+ G+ F + +   +    I      +++
Sbjct: 468 NDSVGHHNGDQLLVSIAERLKQQFPDNTMLARIGGDEFALFMPDMDKDEDIRLTERRLQQ 527

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRV 697
             A P  +    + +  S+G    T         L+NA +A+ +AK     G    S  +
Sbjct: 528 LFAAPFMVEGESVVMKISLGIVQ-TKHGENMPLWLRNASIALSYAKQDPLTGICYYSPEL 586

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S    R  +   +   ++  E    Y PII L    + G EAL +W+    G IS  +F
Sbjct: 587 ASASKFRTQLLTKMQTGIDKREFVPHYQPIIDLASGNVCGAEALARWNSES-GMISPLDF 645

Query: 758 MLIAEELCMIKAINLFMLERIARD-IISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  MIKAI   +L +  RD   +  ++       + +NI+   L      + +  
Sbjct: 646 IPIAEESGMIKAIGQQILLQACRDTYKAIENKQWPSDFQLHVNISVNQLSCPAFVDTVTR 705

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  T      + L  +ES ++ +   +   + +LR +GI + +DDFGT  S L YL  +
Sbjct: 706 VLDVTKLPAKNLTLEITESRIIDSAPTTLENMMKLRDMGIGIAIDDFGTGYSSLGYLHSL 765

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF  +K + + +   T++    +++ ++I +   ++T ++A+ +      + L  +GC  
Sbjct: 766 PFTCLKIDRTFINQLTKENLDSSVVAAVINITAGLKTNVVAEGVEDSTQAQLLRSLGCHQ 825

Query: 935 IQDSHVASPLGFNS 948
           +Q  + + P+  + 
Sbjct: 826 VQGFYYSRPIPLDE 839


>gi|88797811|ref|ZP_01113399.1| inner membrane protein PLUS sensory box protein LssE [Reinekea sp.
           MED297]
 gi|88779488|gb|EAR10675.1| inner membrane protein PLUS sensory box protein LssE [Reinekea sp.
           MED297]
          Length = 616

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/440 (25%), Positives = 202/440 (45%), Gaps = 7/440 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E +++ E +   A  DNLT +PNRQ   +    +    +        V+ +D D++K 
Sbjct: 177 VEEVRRAKEDVEFRALHDNLTNLPNRQFAEEHFDVLQHRLSRGMIANAAVIYVDFDEFKD 236

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G AVGD  L +  + + +  +  D + R+ G+ F I++      L++A  A  + 
Sbjct: 237 INDTQGHAVGDRFLTAKAQALVDCTRVTDQVCRIGGDEFLILVEDL-EELQLAQLAQKLL 295

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +     I +    +  T SIG         T  + +K A++AMY +K  G N    +  S
Sbjct: 296 QHAMREIQIDGNLLHCTCSIGIVCLPKDAETYEDAVKRADIAMYRSKRDGKNRFHFYDRS 355

Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     ++  +  A+ + + Y+V  PI+ L    IVG E L +W HP+ G IS +E
Sbjct: 356 MELIVNRRYQLQSQIMSAILDEQFYIVLQPIVHLESRNIVGAEVLARWAHPELGEISPAE 415

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   +I  + +F++          R     P  ++ +NIA   L      +  + 
Sbjct: 416 FIPLAESNGLIDELWIFVMHHALEAARLLRQL--EPEFYVTVNIAPNQLKSPGFFDQCEH 473

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I ++    S +KL  +ES ++         L +L +  I L LDDFGT  S L +L  +
Sbjct: 474 VIRESQLPFSALKLEITESEMIERDTEFDATLDQLHQNNIGLLLDDFGTGYSNLGHLQKM 533

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            F+ +K +   +      E   A+LR+I+ M+  +   +IA+ I  E ++  +  +G   
Sbjct: 534 LFEAIKVDRLFINHCHLNEDTGALLRAIVAMSGELNVGLIAEGIETEDELARVQELGILK 593

Query: 935 IQDSHVASPLGFNSILKLLK 954
            Q   +A P+  N + + L+
Sbjct: 594 GQGYLLARPMLVNDLKQALQ 613


>gi|159186129|ref|NP_356302.2| hypothetical protein Atu4353 [Agrobacterium tumefaciens str. C58]
 gi|159141263|gb|AAK89087.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 612

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 218/442 (49%), Gaps = 13/442 (2%)

Query: 519 ITEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           I++Q+        L  A  D+LTG+PNR++F   L   L  +  +   R  + VID+D +
Sbjct: 169 ISQQRTEALSNENLLLANIDSLTGLPNRRAFFAHLEVELANA-REKGTRLALGVIDLDGF 227

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND+ G +VGD +L+++++R+   LK      RL G+ F I+     +  ++   A A
Sbjct: 228 KPVNDLYGHSVGDRLLINVSKRLTANLKAS-KAFRLGGDEFAIVAPIIPDDAQLVANANA 286

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVES 694
           + + +  P ++ E  + V+AS+G A +     T  ++   A+ A+YHAK   RG   +  
Sbjct: 287 ISEELRAPYHMPEGTVHVSASMGIAVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFD 346

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  +    I+  L  +   +EL +++ PI+ + D +  G EAL +W  P  G++  
Sbjct: 347 AEHEKQINIEARIEHLLKQSDLKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPP 406

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F  IAE   ++ ++   +L+       +W      P + +  N++++DL  +E    +
Sbjct: 407 AQFFAIAERAGIVGSLTRPLLKMALASASTW-----DPSLRLSFNLSAQDLNCHEGVLSL 461

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +I  + +   R+ L  +E+    + E+ R  +  LR++G  ++LDDFGT  S L+ L 
Sbjct: 462 IGIIENSCFDTRRLDLEITETAFAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLH 521

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + S +T   EK     I++S++ +++++E   + + +    ++  L  +G 
Sbjct: 522 ALPLTKIKIDRSFVTDLHEKPASYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGA 581

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
             +Q    A PL    +   L 
Sbjct: 582 TLVQGYIYAPPLREWDVAAFLS 603


>gi|119946707|ref|YP_944387.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119865311|gb|ABM04788.1| diguanylate cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 727

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/428 (26%), Positives = 198/428 (46%), Gaps = 7/428 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   A+ D LTG+ NR  +L  L   L  S    N    ++ + IDK+  +ND  G
Sbjct: 279 LQSKLAHLAYTDELTGLGNRSRYLADLQVALRESQ-SGNGSWVLLHLSIDKFSHLNDAYG 337

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD +L  L  RI ++      +AR S   F II+ +   + KI   A  + +++   
Sbjct: 338 QEMGDKILKRLGSRIQQVAGNQAKVARPSAADFSIIIDNRLATDKITVLAQNLIETMRKG 397

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRS 702
                 +I +T SIG            E   N  LA+  A+  GG+    F    +    
Sbjct: 398 FQTQVGKIFITGSIGVIDVLKDFDEPDEAHLNGNLALRKAQRAGGDQYAIFSSELNDEHQ 457

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +RV + + L +A+E  E+ + + P I L   ++ GLEAL +W+HP  G I  ++F+ IAE
Sbjct: 458 ERVTLIKILEMAIEKREIEIHFQPQIILSSNKLAGLEALARWNHPSLGQIPPAKFIPIAE 517

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  +   +++   +    WR         I +N++   L  +   + + A + K  
Sbjct: 518 DSGQIVKLGTLIIDMACQQAAQWRKANFDFK-HIAVNVSPIQLWQDNFIDVLSAALEKYK 576

Query: 823 YSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              + I +  +ESV + N +  +  +L  +R +G+ L+LDDFG+  S LSYL  +PF+ +
Sbjct: 577 LPANCICIEITESVFIDNTKHNTLRVLELIRSLGVMLSLDDFGSGYSSLSYLNNMPFNQL 636

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +T      ++  ++R I+ +   ++  +I +      +I  +  MGCD +Q  +
Sbjct: 637 KIDSSFVTNIDIDSRKQKVMRGILSLTTELDFKVIIEGTETIEEIMMVQEMGCDVVQGYY 696

Query: 940 VASPLGFN 947
            A P    
Sbjct: 697 YAKPAPAA 704


>gi|77165694|ref|YP_344219.1| hypothetical protein Noc_2229 [Nitrosococcus oceani ATCC 19707]
 gi|254434317|ref|ZP_05047825.1| conserved hypothetical protein [Nitrosococcus oceani AFC27]
 gi|76884008|gb|ABA58689.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
 gi|207090650|gb|EDZ67921.1| conserved hypothetical protein [Nitrosococcus oceani AFC27]
          Length = 1201

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/437 (22%), Positives = 192/437 (43%), Gaps = 10/437 (2%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +K    I   A  D LTG+ NR+ F  +    L  +   +     ++ +D+D++K IN 
Sbjct: 767  LQKFHSHIAYEATHDPLTGLVNRKEFEQQANRALAKAD-HEAQSYVLLYLDLDQFKIINS 825

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              G   GD +L  +   + E L    ILARL  N+FG++L   ++               
Sbjct: 826  TCGYEAGDALLKEIASLLTEFLPDGGILARLGDNQFGVLLNQCSHDEGCEIAEQQRIAID 885

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--- 698
               +    + ++V ASIG  S +  K  ++ +L+ AE A   AK  G N +++       
Sbjct: 886  NHRLVWNNKRLSVGASIGLVSVSEQKCDAAVLLQRAEAACMEAKEAGRNRIQACEFDDEE 945

Query: 699  -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV--GLEALIQWDHPKWGNISSS 755
               R   +     +   +E+  L L    I  + D   +    E L++        I++ 
Sbjct: 946  FRRRHGMIEWVARIDEVLEDGRLQLWCQRITPIADHLEMEPHYEILLRLRDQDGRWIAAG 1005

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            EF+  AE    + AI+ ++++   R +   +++       I IN++ + L D  L   ++
Sbjct: 1006 EFIQTAEFYHRMAAIDQWVIQSAFRWMADHKERLEQLGG-IAINLSGQSLNDRRLVTFIK 1064

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               ++T   P R+    +E+  + N   S  L+  ++ +G   +LDDFG+  S  SYL  
Sbjct: 1065 REFARTGVPPQRVCFEITETAGVANLSHSAQLIEAVKDLGCHFSLDDFGSGLSSYSYLKN 1124

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K +G+ +     +    A+++SI  +   +   +IA+ +  +  + +L  +G D
Sbjct: 1125 LPVDYLKIDGAFVKDIATSPSDYAVVKSINEIGHFMGKKVIAEFVESKAILAKLQEIGVD 1184

Query: 934  YIQDSHVASPLGFNSIL 950
            + Q   +  P   ++I 
Sbjct: 1185 FAQGYGIEPPQILSAIE 1201


>gi|39933606|ref|NP_945882.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39647452|emb|CAE25973.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 580

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 227/543 (41%), Gaps = 16/543 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           SL +   G   + WD+  D ++ T   A +             ++   +  +       +
Sbjct: 21  SLLLSLLGQAAFVWDLASDTLSWTGRAAELFQDIPAETLATGASFAALLEPSRHVRSDAL 80

Query: 468 LDSFVGYRRG--RLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           L+       G    + E+ +RA+      W+       +  +G   R  GI     E+  
Sbjct: 81  LNGAATAGPGCVPYRIEYGIRASTAAPVSWIEETGVWFAGPDGRPARVEGIVRINNERHA 140

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +L  +  D LTG  NR   +  L   ++ +        + M++ +D   ++ND  G
Sbjct: 141 RDEQLLKLSQHDPLTGELNRTHLIGALAEAIEEATR-FRTSLSFMLVGLDHLARVNDSFG 199

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             V D+V+ ++  RI   L+  D L R SGN+FG++L +             +       
Sbjct: 200 FDVADEVISTIAGRIRNRLRAGDQLGRFSGNKFGLVLKNCTVDDAHIAAERFLAAVRDEI 259

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           +      +++TASIG  S      T+ E +  A+ A+  AKHR       +R +  R  +
Sbjct: 260 VPTKSGPVSLTASIGAVSAPRHARTADEAINRAQEALAAAKHRRSGSFAMWRPNVERDTQ 319

Query: 705 VMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +     +++  A+    + L Y P++          E L++        + + + + +
Sbjct: 320 RRVNIRVTDEIVTALNERRIVLAYEPVVDASSRAPAFHECLVRMKTDDGQVLFAPDIVPV 379

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE L +I+ ++  +LE +  ++ +       P + + +NI+    +D +   G+++L+  
Sbjct: 380 AERLGLIRLVDHRVLELVVAELAAA------PGVTLSLNISPDTTIDADWWAGIESLMLA 433

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R+ +  +E+V + + +  R  + RL+ +G  + +DDFG   +    L  +  D 
Sbjct: 434 HPGIAERLIVEITETVAIPDLDEVRGFVNRLKTLGAKIAIDDFGAGYTSFRNLRALGVDI 493

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +G+ +     +    A ++++I +A+ +    +A+ +  +   + L   GCDYIQ  
Sbjct: 494 VKIDGAFVQNIARSADDRAFVQTLIDLARRLGIKTVAEWVQDDESAQLLRDWGCDYIQGR 553

Query: 939 HVA 941
            + 
Sbjct: 554 LIG 556


>gi|330882389|gb|EGH16538.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 502

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 220/467 (47%), Gaps = 17/467 (3%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRL 551
              +  S G ++       D T    +              A +D+LTG+PNR+ F   L
Sbjct: 33  ASIVLVSIGMLIILRHQYRDFTSLVNAQFKTEQLSNANLLLANRDSLTGLPNRRHFFQTL 92

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            T ++ +    +    V V+D+D +K +ND+ G +VGD +L+ +  R+   +     ++R
Sbjct: 93  DTAMNEALLQRSG-LAVGVLDLDGFKPVNDLYGHSVGDRLLMLVAERLISAVSDTVQVSR 151

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           L G+ F +++  + +   +  F   +   I     L E  I + A++GFA++ ++   ++
Sbjct: 152 LGGDEFALLVKGDISDEALLMFGKHICTLIHEGFELSEIPIQIGATLGFATFPATADNAA 211

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
           ++ + A+ A+Y  K+        F  S           ++ L  A   +E ++++ PII 
Sbjct: 212 QLYEYADYALYQGKNHNPGSTCLFSASHREQLNADGVTEQALRRANLETEFHVLFQPIIE 271

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               E V  EAL +W+ P+ G +S + F+ IAE + MI  +   +L +  +  +SW    
Sbjct: 272 SCTRETVAFEALARWNSPELGAVSPAHFIPIAERIGMINELTAPLLTQALQRALSWPS-- 329

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              PI +  N+++ D    E  + +  +I  + +  SR+ L  +E+ VM +  + +  + 
Sbjct: 330 ---PIKLSFNLSAHDCATWESVKKIVEIIENSGFDASRLDLEITETAVMQDIGQVQQAIA 386

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAK 907
           + R++G  ++LDDFGT  S LS L  +    +K   S +T          I++S++ ++ 
Sbjct: 387 QFRQLGCGISLDDFGTGYSSLSQLHALALTKLKIARSFVTSVHDNPTSYKIVKSLVALSL 446

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++    + + +  + ++  LT +GC  +Q +  + P+ F   L  ++
Sbjct: 447 DMSLDCVIEGVETQDELNMLTSLGCTMVQGNFYSPPITFAETLVWIE 493


>gi|332304983|ref|YP_004432834.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172312|gb|AEE21566.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 616

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 206/461 (44%), Gaps = 20/461 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+ +K   E +    +QD LTG+PNR+     L ++L  +  D      V  ID+D++K 
Sbjct: 154 ISNRKAVEEQLRMQTYQDVLTGLPNRKMLNINLQSLLTNA-EDHGQYGAVFFIDLDRFKL 212

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADF 633
           IND LG +VGD++L+++T ++   ++  D LAR+ G+ F ++L     + +         
Sbjct: 213 INDTLGHSVGDELLINITSKLKGCVRRDDTLARVGGDEFILLLSDIGPTEQSAVAKATKV 272

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSS--------KITSSEMLKNAELAMYHAK 685
           A  M       I L    +  + SIG A + S            + +++K+A++AMY  K
Sbjct: 273 AEKMLGITRDSIELAHCAVFTSFSIGIALFPSPELNVKKTIAEQAKQLVKHADVAMYKIK 332

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           H   N    +R            +++ L +A+      L + P++ +   E+V  EAL++
Sbjct: 333 HTSRNGYLFYRQELQIMSAFRSEVEQRLHVALREDAFELYFQPMVNVA-GEVVAAEALLR 391

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIAS 802
           W   K G +   +F+ +AEE  +I  I  ++L +    I    D      +  I INI+ 
Sbjct: 392 WHDAKLGWVGPQDFIPVAEECGLIVDIGQWVLRQTCELITQHLDWFEQGTLRYISINISP 451

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +        E +  +I +  +  S ++L  +E V M N   +  ++  L    +   LDD
Sbjct: 452 RQFSQPHFVEQLLEIIEEFSFPHSYLRLEITEGVAMENITSAISIMKALIAHELFFMLDD 511

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG+  S LSYL  +P  +VK + S ++   +      I+ +II ++++     + + +  
Sbjct: 512 FGSGYSSLSYLHRLPLKSVKIDRSFVSKIDQSTDNQVIVEAIIYISQHFSLECVVEGLET 571

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             +     +     IQ  H   PL    ++  L  +    +
Sbjct: 572 PEEYAYFHKKVVAAIQGFHFYKPLSRIDLVNTLGSQANASR 612


>gi|306820226|ref|ZP_07453868.1| developmental regulator MorA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551723|gb|EFM39672.1| developmental regulator MorA [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 775

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 206/443 (46%), Gaps = 14/443 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +    +     D LTG+ NR+ F      I+  S    N    ++ +D+D +K IN
Sbjct: 327 ELIDTQNKKILLETTDALTGLSNRRFFNQAAHNIILSSEPTKNNHI-MIYLDLDNFKAIN 385

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK----IADFAIA 636
           D LG+  GD +L  +   +   +    +++R+ G+ F I +  E         I D A  
Sbjct: 386 DTLGLLTGDKILKHVADVLKMSVPVNSVISRIGGDEFLIFIKHEEEMGTYSKIIDDVANN 445

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           + ++I   IN+    I ++ S+G + +         ++KNA++A+Y AK  G N    F 
Sbjct: 446 ILENIKESINIDNNVIDISVSMGISVFPMGGGDVDTLIKNADIALYQAKENGKNGYGIFE 505

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHP---IIRLMDEEIVGLEALIQWDHPKWGN 751
               +   +   +  D+  A+EN +  + Y P   I     +EI+G E  I+W HP  G 
Sbjct: 506 EDKHNQIKEEFDLTNDMISALENDKFEIYYQPQIKIDNDNKQEIIGFETFIRWLHPTKGF 565

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS ++F+ +AE    I  ++L++L+ I R I+ W +    P   + IN A+     + + 
Sbjct: 566 ISPAKFIPMAERSGYINKLSLWILDSICRQIVRWNEMGFNPN--LSINFAAPSFGKDYVY 623

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
               AL+       + I+   SE  +  N + +   L  ++K+ + + +D+FGT  S L+
Sbjct: 624 NTTIALLKNLNIDLNTIQFEISEKYLAKNIDVTIETLDEIKKVNVKIAIDNFGTDYSSLN 683

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL YIP D +K + S + G    +K  AI+ ++I + +     +IA+ +  +     L +
Sbjct: 684 YLKYIPVDVIKLDLSFINGIGKNKKDEAIIIALIKLCQYTGIDLIAEGVETKAQYDFLMK 743

Query: 930 MGCDYIQDSHVASPLGFNSILKL 952
            G   +Q  +    +  ++I +L
Sbjct: 744 HGLRKMQGYYFYKSMPADAITQL 766


>gi|302186094|ref|ZP_07262767.1| GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 533

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 206/430 (47%), Gaps = 13/430 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D L+G+ NR+ F ++L   L         +  V +ID+DK+K IND  G A GD
Sbjct: 101 ESLARHDPLSGLLNRRVFHEQLVARL----QQPATQTAVFLIDLDKFKLINDTHGHAAGD 156

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             + ++   + +        +ARL G+ FG+ +  + +  ++A  A ++   IA   ++ 
Sbjct: 157 AAICAVAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAESILAKIAAS-SVG 215

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
              +  +A++G A           +L+ A+ AMY  K  G      + VS  R  R+   
Sbjct: 216 LPGVAFSATLGAAIAPMDSSDPDILLQRADSAMYRGKTGGRATFHFYEVSFEREQRLQEQ 275

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +L LA+E  ++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +
Sbjct: 276 FARELTLAIEEKDIQPFYQPIVSLPEQRLAGFELLARWLHPERGIILPLDFIPVAEQLGL 335

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           IK +   +L +       W          + IN+ S  +   +  + ++ L S+  +  S
Sbjct: 336 IKPLTATLLLQAFAQARDWPS-----DFTLAINVTSLMIESPDFPDWLEQLASEGEFPLS 390

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S
Sbjct: 391 RLEVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRS 450

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 E +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL  
Sbjct: 451 FFDTKLENQNEMVKAILALGKSLRMKITAEGVEHEQLADWLATHECDFAQGYLFGRPLPS 510

Query: 947 NSILKLLKER 956
             + +LL  R
Sbjct: 511 AQVRELLAMR 520


>gi|89094767|ref|ZP_01167701.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
 gi|89080932|gb|EAR60170.1| sensory box/GGDEF family protein [Oceanospirillum sp. MED92]
          Length = 655

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/434 (24%), Positives = 211/434 (48%), Gaps = 6/434 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+  +    +   +  D+LT +PNR++    L   +        +   V+ ID   +K I
Sbjct: 213 TKTLQYQMKLEEESNYDSLTHLPNRKNCQFYLQQRIVKDLALGEIVY-VIHIDFLNFKSI 271

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N + G  +GD  L++   ++  +L+    ++R   +RF ++  +  +  ++      ++K
Sbjct: 272 NSLYGSHMGDQFLITAKHKLETILEENFYISRYGSDRFVVVNYNPFHRHEVELIVDLLKK 331

Query: 640 SIAMPINLLER--EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            +  P+ L +   + ++  SIG  ++     ++  +L  +E     ++           +
Sbjct: 332 ELESPVALSQDVSDFSLNVSIGIVTFPHDFSSAEALLLASERMAKESRKLSRPVYYEKAL 391

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               ++R  I++ L  A++  E  L Y PI+ L D  I G EALI+W  P+ G I    F
Sbjct: 392 DMEINERDQIRQSLTTALKKEEFSLNYQPIVNLSDGSIHGYEALIRWHSPELGFIPPDRF 451

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I  I  +++    RDI       N   I I INI+ +  + +     +Q  
Sbjct: 452 IEIAEDESLIIPIEEWVINTACRDISQL-SVLNNLKIKIAINISYQHFISDRFIPNLQRA 510

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ISK    P +I++  +E V+  +  +    + RL+++GI +++DDFGT  S L+YL    
Sbjct: 511 ISKVDLHPEQIEIELTERVLAEDAYQVETKIQRLKQMGIKVSIDDFGTGFSALNYLKDFS 570

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FDT+K + S +      E+ +A++++II +A +++  +IA+ I  E   + L +M C++ 
Sbjct: 571 FDTLKIDKSFVQSMLSNERNLALVKNIIRLAHDLDIEVIAEGIELEHQYQSLAKMRCNFG 630

Query: 936 QDSHVASPLGFNSI 949
           Q   ++ P+ F  +
Sbjct: 631 QGYLMSRPVPFKEL 644


>gi|332994704|gb|AEF04759.1| sensory box protein [Alteromonas sp. SN2]
          Length = 723

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/572 (20%), Positives = 221/572 (38%), Gaps = 22/572 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +      +  + A   S + +                  ++G A   M     N    +
Sbjct: 167 QREAEQSFQLMASAFANSREPMLVLSPSLSINECNEAFVKLVG-APDKMACINLNLNDLL 225

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                     +  + + +++ +L++E  +     +   + I +    N        I   
Sbjct: 226 ------KGEKVNTNSLEHKK-QLRFESVIVPRVGENTAVDISVSVFDNYLEASSSLIATM 278

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DI+E+K++   +   A  D LTG+ NR +  D    +      D +    V+ ID+D +
Sbjct: 279 RDISERKRNEARLKQLALYDELTGLNNRSALRDIFQQLF-----DSHGDFLVVFIDLDGF 333

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD  L  +   +         +AR  G+ F  +L  +N    +      
Sbjct: 334 KAINDTAGHEKGDVELQRVAALLTASFGPFGDVARWGGDEFIAVLSRQNIEWAVEKSEAL 393

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +R      +   + E+ ++ASIG A +     +   +++ A+ AMYHAK  G   V  + 
Sbjct: 394 IRLIEEDVVVTKKVELKLSASIGIAKFPEHNDSIEGVVQCADAAMYHAKKLGKGQVNVYE 453

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +        +  DL  A+E + L         L    + G E L +W     G +  
Sbjct: 454 DGLYERMSQQVSMVNDLRKAIEKNLLDYYIQGKYDLQ-GNLKGGEVLCRWISGLHGVVPP 512

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   +   I L  LE     I     Q     I + INI+   +LD +     
Sbjct: 513 LVFIPIAEAHDLDCQIGLQALEAACDYIAMMEAQQG-ESIPLSINISVNQMLDTDFPAQA 571

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             + + +    + I+L  +ES+ + + + +   L  LR++G  L+LDDFG+  S LSYL 
Sbjct: 572 TKICNDSSVRTNMIELELTESIFIRDEKAALAALNSLREVGFRLSLDDFGSGFSSLSYLR 631

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              F+ VK + SL+          A+   ++ M   ++  I+ + +  E  +  +     
Sbjct: 632 NFHFEVVKVDRSLVKDIHNNSKANALFCGLVAMLNRLQIEIVVEGVEQESYLPFMENADV 691

Query: 933 DYIQDSHVASPLGFNSILKL---LKERFPLVK 961
           + +Q  +   P+ ++  L     L + FP  K
Sbjct: 692 NLMQGFYFDKPMPYDQFLARHTNLSDTFPSRK 723



 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
               ++  LA+  S +  WDW    D +       ++   +  +  G   + +  +H  D
Sbjct: 48  QQSQKKLELALWASQESFWDWQASHDIIDI--RAFSLNSESESTWSGTPIDLMALVHEGD 105

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDI 519
            +N +      +   R R++  FR+ +   Q  W+ +R R +   S+G+ L+ +G   DI
Sbjct: 106 LENLQFQWSMALHGGRERIELSFRM-SIQGQLQWVRLRGRVLKRGSSGEALQIVGTTRDI 164

Query: 520 TEQKKSLEGILCNA 533
           T+Q+++ +     A
Sbjct: 165 TQQREAEQSFQLMA 178


>gi|307153629|ref|YP_003889013.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306983857|gb|ADN15738.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 607

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 202/425 (47%), Gaps = 6/425 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR  F + L+  +  +  +      ++ +DI++ K +N+  G  +GD VL 
Sbjct: 176 YLDPLTQLPNRNLFHEYLSIAIGNARQNKK-PLAILYLDIEQLKDLNERWGNLIGDQVLQ 234

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L +++   L+  DI+AR  G+ F I++   N    + +    +  S+  PI+L    I 
Sbjct: 235 ELAKQLKSCLRSGDIVARWGGDEFTILIPHINRVEDLPNICQRILNSVTQPISLERHLIN 294

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           +  ++G A +       + +L+ AE  +   K +    +   +   ++       IK  +
Sbjct: 295 IKINMGSAIYPEHGTEETLLLQKAEANLEENKQKSQETICVKKQQIYQQKSQAEKIKFMV 354

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AV N +  + Y P I +   +I G+EAL++W HP++G+I+ ++F+   E+L ++  + 
Sbjct: 355 KKAVINQDFLIYYQPQINIKTNKIEGVEALLRWHHPEFGSIAPNQFIPWVEKLDLVIPLT 414

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            + +E++AR   +WR   +   I I IN++S  L    L   +           + + + 
Sbjct: 415 EWFIEKVARQHQAWRAS-DFSFIPISINLSSHQLQAPTLLSILNQNFLSIGLEGNLLIVE 473

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  +  NP+    LL  L+++GI   +DDFG+  +   +L   PF  VK   SL+   
Sbjct: 474 ITEKTLQENPQNVFRLLHELKQLGIKACIDDFGSGTTSARHLQQFPFTQVKIAQSLLQNL 533

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               + I+++ ++I +    +  +IA+ +  E  +  L ++ CD IQ    + PL     
Sbjct: 534 EKYPEEISMIAAVIALGHTFKLKVIAEGVETENQLDILRKLDCDMIQGYVFSKPLNEIEA 593

Query: 950 LKLLK 954
            + L 
Sbjct: 594 TQFLS 598


>gi|78778135|ref|YP_394450.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498675|gb|ABB45215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 861

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/597 (20%), Positives = 240/597 (40%), Gaps = 43/597 (7%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +   K L         +  L  I++LI   +I    +         S  E+   AV  S 
Sbjct: 295 LTFYKILLITSFLLTTIITLASIMVLIVRKIISSTNSLEQNYDESISLLEQYRAAVDRS- 353

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            IV   D          +   I G +   + G   N++   H   +DN    +   +   
Sbjct: 354 FIVSKTDPKGIITYVNSEFCKISGFSKDELIGKSHNFIR--HPQMKDNTFKEMWHTIKEL 411

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           +   + E      D  ++W+   I P+ + NG+I+ YI I +DITE K +L         
Sbjct: 412 KKPWRGEVINLKKDGSYYWVKAIINPILDKNGEIVEYIAIRSDITEIKNAL-------TT 464

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  NR    + +  +            ++ ++++D ++++ND  G   G+ V++S+
Sbjct: 465 DALTGYDNRTKLSEDIKEL---------KDLSLAILNLDNFRQLNDFYGHQFGNLVIISI 515

Query: 596 TRRIGELLKFPDIL--ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
             +I   +     L   RL G+ F  ++  E +  K       +   I    ++   EI 
Sbjct: 516 ANKIYNFISKDKKLKFYRLQGDEFV-VVGVEYDKEKFISKTKEILLLIKERFSMKNEEIL 574

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVMIKED 710
           ++ S G +        +  +L  A +A+  AK    + +        +    + +++ + 
Sbjct: 575 LSCSCGISF-----EDNEHILSGANMALKTAKKSSIDLLVYDDSLSLNQQYENNMIVTKK 629

Query: 711 LCLAVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +  A++N  +   Y PII   D  +E    E L++        +S   F+ IA++     
Sbjct: 630 ISDALKNDNIITYYQPIINNKDENKEPKKYECLVRMRDGD-KILSPYFFLDIAKQTKQYF 688

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I   ++ +          Q         IN++  D+LD E+ + +  ++ +     +R+
Sbjct: 689 GITKAVVFQAFEMFKDKEAQF-------SINLSINDILDEEMSKYILMMLDRYEV-GNRV 740

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + N E   + + +++K    + +DDFGT  S   YL  +  D +K +GSL+
Sbjct: 741 IFEILESEYIENFEELLIFITKIKKYKCKIAIDDFGTGYSNFGYLIKLKPDLLKIDGSLI 800

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
               + +    I+ +I+  +  +   I+A+ +  +   + +  +G DY Q  + + P
Sbjct: 801 RNIDKDKNARLIVSTIVEFSHKLGMKIVAEFVENKEIFEIVKTLGIDYSQGYYFSEP 857


>gi|152964997|ref|YP_001360781.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359514|gb|ABS02517.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 450

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/438 (22%), Positives = 196/438 (44%), Gaps = 12/438 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++        A  D LTG+ NR++ L+   +          L   +       +K +ND 
Sbjct: 11  RQRNRARDDLARTDPLTGLGNRRALLEVGGSWPAPGPGPGLLLLDLDG-----FKDVNDT 65

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG A GD+VLV +   +   +    ++ RL G+ F +++    +  ++   A  +  ++A
Sbjct: 66  LGHAAGDEVLVQVAHALARTVGDRGLVVRLGGDEFAVLVPEPASDEELEVVAKRLLTALA 125

Query: 643 -MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSF 700
               +     I +  SIG A   +   +  E+L++A++AMY AK  R G           
Sbjct: 126 VGSFHAGVVPIDLQGSIGIARAGADGNSLGELLQHADIAMYAAKRGRAGVLRYDAATDPH 185

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + +      A+E  +L L Y P +      ++G EAL++W+HP  G +  ++F+  
Sbjct: 186 SGGGLELLGQFRGAMEEDQLELHYQPKVSGDGSRLLGFEALVRWNHPTRGFLLPADFLPF 245

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   +I  +  ++L    R   +WR Q       + +N+++  L D  L   ++  +  
Sbjct: 246 VERTNLIHPLTRWVLLTALRQAATWRAQGVRT--TMAVNVSAVAL-DAGLLGVVEEALVL 302

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T ++P+ + L  +E+ V+ +P+ +R  + +LR  G+ +++DDFG   + L +L  +P   
Sbjct: 303 TRWAPADLVLEITETAVVNDPDGARATIAKLRDRGVRVSVDDFGAGSTSLGHLRGLPVHE 362

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +       +  A++ S+I +A  +   ++A+ +        L  +GCD +Q  
Sbjct: 363 LKIDRQFVAELVAHPEDEAVVSSVITLAHRLGLVVVAEGVETAAVADRLCALGCDELQGF 422

Query: 939 HVASPLGFNSILKLLKER 956
             A PL     L   +  
Sbjct: 423 FFARPLPAEKALAWARAE 440


>gi|187478283|ref|YP_786307.1| signaling protein [Bordetella avium 197N]
 gi|115422869|emb|CAJ49397.1| putative signaling protein [Bordetella avium 197N]
          Length = 691

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/429 (26%), Positives = 210/429 (48%), Gaps = 7/429 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++ E +   +  D++TG+P R  F ++L T +      +  +  ++VID+D ++ +N+
Sbjct: 254 LREAQEQLSYLSAYDSVTGVPKRHIFDEQLATTIAQ-GRAEGRKLALLVIDVDAFRAVNE 312

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD+VL    +R+  +    D LARL G+ F +  +   +       A +   S+
Sbjct: 313 AFGHQVGDEVLKQTAQRLQSVCGPNDQLARLGGDVFVVAAVLPPSLST-TAVAASYLASL 371

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             P+ +  +E+ ++AS+G A +    +    ++  AE A  HAK  G      F  R++ 
Sbjct: 372 REPLYVGGQELRLSASMGIALYPQDGLDPPTLIAKAEAAKAHAKQLGRERSACFTPRMNM 431

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                V + E L  A++  EL L Y   I     + VG+EAL++W +   G ++  EF+ 
Sbjct: 432 ASDRPVRVLEQLRSAIDKDELRLFYQAKIDAATGKRVGVEALLRWQNKALGYVAPDEFIP 491

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +A++  MI  + ++ML+ + R +  W       P  + INI         L + +  ++ 
Sbjct: 492 VADQNHMILPLQVWMLDEVCRQLADWDKVDAAIP-TVAINIPEVQFQQPHLADSLAIVLK 550

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     +R+ L  +E+  M +  +S  ++ RL  +GI L++ DFGT  S L YL   P  
Sbjct: 551 RHNLQANRLILEVAETTAMKHAAQSVKIMQRLHAMGIGLSIGDFGTGYSSLPYLRRFPAS 610

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G        +++ +I+ MA+ +  T++A+ +  E   ++LT +GCD +Q 
Sbjct: 611 ELKIDRSLIHGLGTASGETSVVTAILAMARALRLTVVAEGVETEAQRQKLTELGCDVLQG 670

Query: 938 SHVASPLGF 946
             V  P   
Sbjct: 671 YLVGRPAPA 679


>gi|195952588|ref|YP_002120878.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932200|gb|ACG56900.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 947

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/570 (18%), Positives = 234/570 (41%), Gaps = 29/570 (5%)

Query: 396 FSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
             + I  D E   L  A   +   +               +  + G     + G      
Sbjct: 387 ALEKIDKDKESIVLRKATDDAKMWLLITSKEGLIEYVNQHVLDLTGYKKEEVIGKSPKMF 446

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              + +D +    +  +    +       F  +  +    ++   I P+  ++G  ++++
Sbjct: 447 NSEYQSD-NFCDEVWRTVSSNK--PFSAIFAYKTKNENVIYIDQTIYPVVLNDG-TMKFL 502

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  DIT +K   + +    F D LT +PN  +F   ++ +++     D     +++IDI
Sbjct: 503 FVGKDITNEKVLSQELDKYKFYDTLTELPNFLAFKFYVSDVVESKRYKD---FALILIDI 559

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
                +N   G  VG++VL  +   + +  K    +AR+  + FGI +    +       
Sbjct: 560 YNMSFVNSTYGFDVGNEVLKEVANILKQEFKEG-FVARIGNDEFGIFVPDIESES---IL 615

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +R  +   I   +  I+++ ++       +     E+  NA + +  +K  G N ++
Sbjct: 616 IYKIRSLLDRKIKTSKNYISISYNVSIVLSDVANTDFEEVYNNAVVTLNLSKKEGENVIK 675

Query: 694 SFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +   V++   + +  +  +  A E +     + P +   D +IVG E+LI+        
Sbjct: 676 FYESEVNTRLQEYITSENLVERASEENLFRFYFQPYLNSKDLKIVGFESLIRIVDKDGTV 735

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK---DLLDN 808
            +  +F+   E    I     + L+ I+  I  ++       I I +N+++K    L D 
Sbjct: 736 YAPYKFIDYLENSKYIMHFEEWALKEISDKIRIFKSL--DKDISISLNLSAKGILSLPDE 793

Query: 809 ELCEGMQALISKTLYSPS-RIKLSFSESVVMGNPERSRLLLGRLRKIG--ISLTLDDFGT 865
           +  E + ++           + L  +E  ++ N E+S+ +   +++    I +++DDFGT
Sbjct: 794 DFIEKLASV----PVDVQDNLVLEITERNIIKNVEKSKKIFRSIKEFNKHIKISIDDFGT 849

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL ++P D +K + S + G    R   +I++ I  ++K+     IA+ +  +  
Sbjct: 850 GYSSLAYLKHLPIDILKIDISFIRGIATDRHDFSIVKFITGLSKDFGFKTIAEGVETKEQ 909

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  L+ MG DY Q  + A P+  N  ++ +
Sbjct: 910 VDMLSSMGVDYFQGFYFAKPMPENEAIEFV 939


>gi|303325955|ref|ZP_07356398.1| putative sensory box protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863871|gb|EFL86802.1| putative sensory box protein [Desulfovibrio sp. 3_1_syn3]
          Length = 729

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/578 (21%), Positives = 226/578 (39%), Gaps = 38/578 (6%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI--RNWLP--YIHINDR 461
           R       +  +V++W            I  +L   +GS  G      W     +   DR
Sbjct: 161 RYRAITEQTRSLVFEWQEQT-LTYVDAAIPRLL---AGSYDGRHLFDLWREDSVLFSEDR 216

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             F   L +             R+R     F W ++    + ++     RY+G   D+ +
Sbjct: 217 PMFENFLRALAAGDLSS-AVTVRLRRRTGAFTWYVVSCTRI-DNTATGARYVGSLRDVDK 274

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
              +   +   A  D+LTG     +FL +   +L       +    ++  D+  +K I++
Sbjct: 275 AIHTAHSLRQQAEYDDLTGACTMPTFLGKTERLL---RRYPDTPRHIVRYDVTGFKSIDE 331

Query: 582 VLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   G  +L +++    E L    +I ARLSG+ F   L  ++             + 
Sbjct: 332 RFGQEEGRRLLRAISYLTKENLSADREIFARLSGDIFLACLEGDHER------VWEFMEW 385

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +        +        G            E+ + A LA+   K RG      +     
Sbjct: 386 LRYGTAEYAKAYRPELFFGVCRVDDPATPVREICERAYLALKSVKGRGMTDYAFYDDELR 445

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   D + IK+ +  A+   +      P + +    IVG EAL +W HP+ G I  S F+
Sbjct: 446 NRVLDELFIKDQMYTALAEGQFVAYLQPKVEIFSGRIVGAEALARWRHPERGLIPPSRFV 505

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E    I  ++ ++ E   + + SW D+    P+ + IN++     DN  C+ ++AL 
Sbjct: 506 PFFERNGFIIQLDEYIWEEACKLLRSWLDK-GYRPLPVSINVSRMHFNDNGFCDKLRALT 564

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       ++L  +ES    N +  +  +  L++ G + ++DDFGT  S L+ L  +PF
Sbjct: 565 DKYRLPRHLLELELTESAFFENEKILQRTMHSLQENGFAFSMDDFGTGYSSLNTLRALPF 624

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +TVK + + ++ S   ++   + R+ I +AK +   IIA+ +        L  MGCD+ Q
Sbjct: 625 NTVKLDRAFVSDSTGNQRGRIVARNTIVLAKQLGMRIIAEGVETVEQALFLRNMGCDHAQ 684

Query: 937 DSHVASPLGFNSILKL-------------LKERFPLVK 961
             + + P+                     L++R P  +
Sbjct: 685 GFYYSRPMDAREFEVFSFVRGKSFWVDPRLQDRLPGTE 722



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 12/141 (8%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP-DIATILGLASGS--MHGPIRNWLP- 454
              +   R +  +    D +++ D   D    +                +   +      
Sbjct: 10  AAAAMERRYARLLSNFYDQIYELDFNAD-FYRSVFQSGEKFCAPPEGRGLAVMLEAAADT 68

Query: 455 YIHINDRDNFRTI-----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            IH  D+  FR +     L   +         E+R +  D  + W+ I + P  + +G  
Sbjct: 69  LIHPEDKAGFRQMFRREELRRALATTGRSTGAEYRKKCLDGSYRWVRIMVFP-FDESGR- 126

Query: 510 LRYIGIANDITEQKKSLEGIL 530
            RY+    DI   K       
Sbjct: 127 ERYLICFQDIDGYKHLGASTR 147


>gi|239628814|ref|ZP_04671845.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518960|gb|EEQ58826.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 732

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 207/510 (40%), Gaps = 23/510 (4%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +    R    +  G +  R   E R    +    W+ +    +   +GD +  I +  
Sbjct: 224 PENEAVLRECYPAMRGGKPVRFTMEAR--DKEGNAVWLQLNGDCIDWIDGDPVYLI-VYI 280

Query: 518 DITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           DIT+       QK++   +   AF D +TG  NR  F  +    +  +         ++ 
Sbjct: 281 DITDLTRQRELQKETNMQLERLAFTDPVTGGYNRTCFELKAGEGVRAA---PAGTYALVW 337

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+ K+K +N++ GI  G+  L  +   I   L+  + ++R S + + ++L   +   ++
Sbjct: 338 MDVQKFKLLNEMFGIEGGNQTLKYIHDVIRGCLEQGEYVSRTSADNYSLLL-KASPKQEM 396

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG- 689
                ++ + +       E +  ++ + G       K+   ++   A +A  +       
Sbjct: 397 EARLNSIAEKVNHFNKDAEEKYILSLTAGVYYVEDPKLPIMQIQDRANVARENIIRTADA 456

Query: 690 ----NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                   S            I+  +  A+E  +  +   P   L  + I G EAL++W 
Sbjct: 457 KLCLCMFYSELDQLRLMQEKEIENRMRDALEKEQFVVYLQPKQSLRSQSIAGAEALVRWL 516

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P+ G I   +F+ + E+   I  ++L++ ER+   +  W D     P+ + +N++   L
Sbjct: 517 DPERGLIPPKDFIPLFEKNMFIVKLDLYVFERVCALLRKWIDH-GENPVPVSVNMSRAHL 575

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D +  +  + +  +       +++  +E++V GNP+    ++    K G   ++DDFG+
Sbjct: 576 SDRDFLKRYEEIRKRYGVPADLLEIELTETLVFGNPDVLMQVIDAFHKCGYRCSMDDFGS 635

Query: 866 KCSLLSYLGYIPFDTVKFNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
             S L+ L  I  D++K + +          K   ++ S+I +A  +  T +A+ +  + 
Sbjct: 636 GYSSLNVLKDIDIDSIKLDQAFFGSEKMDNPKERDVITSVIELAAKLNMTTVAEGVETDA 695

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               L    CD +Q    + P+      ++
Sbjct: 696 QEDFLKGTTCDLLQGYIFSRPVPPEEFERM 725



 Score = 48.8 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 427 RVTTTPDIATILGLASGSMHG---PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            V        ++G              +     + ND +         +     R ++  
Sbjct: 71  VVWANDFYYDLIGYPKEEYEAVFHNQCDLFFRSNTNDWEGIVAAAMGALKAGEPRYEHIT 130

Query: 484 RVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIANDITEQKKSLEGI 529
           R+R  D    W+ +      +  +G  + Y  + +D+++  +  +  
Sbjct: 131 RMRHKDGHMMWVRLVGTYTEDVVDGYHIAYT-VMSDVSDIIRMQKEQ 176


>gi|254501371|ref|ZP_05113522.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222437442|gb|EEE44121.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 658

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 202/442 (45%), Gaps = 12/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K        A  D+LTG+ N++ F   L   L  +A     R  + + DI   K I 
Sbjct: 211 ETEKLNALNYQLATTDHLTGVANKRFFRQELDRAL-RAANASGERFGLCIFDIGGLKSIT 269

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++ G+  GD VL  + RR+  +      + R+ G+ FG       +  K      A  + 
Sbjct: 270 EIYGLDAGDQVLKEVARRLSGMDGEGVFVGRVGGDEFGFF--GTCDPEKYQRVKAAFERL 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           I +P+   +       S G A    +   ++E+ + A+ A+  A+        S+   + 
Sbjct: 328 IELPVETKQGRFRPNYSAGIAHSNGAVTCATELFERADFALSTARENRKETSVSYDACLD 387

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           + RS    I   L        L+L + PII +    I+G+E L +W HP+ GNI+  +F+
Sbjct: 388 ARRSRDTEILSALLDEETRDGLHLAFQPIIDITCNSILGVECLARWHHPQLGNIAPVDFI 447

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I+L + E+   +  +W +      + +  N+++ +L          +++
Sbjct: 448 PLAERSGVINLISLDLFEKALSEAKAWPES-----LRLSFNLSASNLSSRRFIVEFLSIL 502

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++   P R+    +E+ VM + + +R  L  L+  G+ ++LDDFGT  S LS++  +P 
Sbjct: 503 KQSGIDPQRLSCEVTETSVMWDFKETRRALDTLKGAGVRISLDDFGTGYSSLSHVHRLPL 562

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S ++          I++S++ +++++  + + + +  + ++  L  +G  ++Q
Sbjct: 563 DCIKIDRSFVSDLCPGSTGYGIVKSLLALSRDMAISCVVEGVETDDELSILKDLGASFVQ 622

Query: 937 DSHVASPLGFNSILKLLKERFP 958
               + PL    + +LL    P
Sbjct: 623 GYLFSKPLNAAELAQLLATGLP 644


>gi|332531892|ref|ZP_08407776.1| response regulator/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038519|gb|EGI74962.1| response regulator/GGDEF/EAL domain protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 729

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 192/436 (44%), Gaps = 15/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A++D LTGI NR +F++R+                 +++DI  +  IN+ L
Sbjct: 306 RLFVKLRDAAYKDVLTGISNRTNFIERVEGY----QKPHVNDYVFVLLDIVNFADINNGL 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VG+ VL+ + +R+ E      +L+R+  + FG I+       +       + + + +
Sbjct: 362 GQEVGNKVLIGIVQRLKENYPTAKLLSRIGADVFGFIIR------QGELDLKKLNEQLGV 415

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P    E  + +   +G       + +  + LK A +A+  AK         + V      
Sbjct: 416 PFCAEEHTLPIDFRLGLCQQQDFQSSGIDTLKVAYIALNQAKKTKHKEGIYYSVDMQDKM 475

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              I     L      ++L + Y P + L D  ++G EAL++W       IS + F+ +A
Sbjct: 476 AWRIGIIRQLRHDFARNKLEVWYQPQLSLGDLSLIGCEALLRWPTGNGSYISPAVFVPLA 535

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  ++LE+  +      +      I I +N++          + ++  + K 
Sbjct: 536 EDAGLIVDIGQWVLEQACQQQKRLENMG--TEICIAVNVSIPQFKVKGYAQNVKNTLLKY 593

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I+L  +ESVVM   E     L  L+++G+ + +DDFGT  S LSY+  +P D +
Sbjct: 594 GVKPKNIELEVTESVVMDELETVISTLKELQELGMEVAIDDFGTGFSSLSYIQSLPLDRL 653

Query: 882 KFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + + +     +   AI   +I +   +    IA+ +  +   + L  +GCD +Q    
Sbjct: 654 KIDRAFIKDLPNDDTGAIAALVISLGAKLGLKTIAEGVETQEQAQFLKNLGCDEVQGFMY 713

Query: 941 ASPLGFNSILKLLKER 956
           A P+  + +++ + +R
Sbjct: 714 AKPMPEHELIEFINKR 729


>gi|157960257|ref|YP_001500291.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845257|gb|ABV85756.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella pealeana ATCC 700345]
          Length = 857

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/570 (19%), Positives = 228/570 (40%), Gaps = 24/570 (4%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
                ++    +  + +    + V   DI  +     P    +L L++    G       
Sbjct: 296 QLLDSLYRQESQSQVTLEFIAEAVILTDIHCEVSYINPYAERLLQLSNAQAQGK------ 349

Query: 455 YIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
            IH       +    +++F+      +   F +R   +    +   +   SN +G+I+  
Sbjct: 350 RIHELLPGNQSLSDKVNAFMQSPSLSIDSIF-LRLNCDSPKLLSASLAHFSNHSGEIIGA 408

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +  D T++      +   ++ D +TG+ NR +F +R      +     +    V+ +D
Sbjct: 409 VLVLKDTTQEALLKRQLQRQSYLDPVTGLLNRTTFEERF-----MGYAQSSQSLAVVYLD 463

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ++++K IND  G A+G+ +L  + R I   L    +L R+ G+ FG+I+   +       
Sbjct: 464 LEQFKLINDSSGHAIGNKMLKKVARVIESCLSDNMLLGRIGGDEFGLIVRDSSALAVAKL 523

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNH 691
               +       +   +    V  S+G A    +       +LK+A++A   AK +G N 
Sbjct: 524 IKKIIAGVGCQTVTHNDTCYRVGVSVGVALSRVNKDTDLLGLLKDADIACLAAKRKGCNQ 583

Query: 692 VESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEALIQWDH 746
           V  +                   +  A+E++EL L Y  I  L        LE L++   
Sbjct: 584 VHFYDGRDIDLSYQRNAPKWAVRIVQAIEHNELILYYQKIKCLSSHSHRQRLEILLRIQE 643

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P    +  ++F+  AE   +I  ++  ++ +    +    ++       + IN++   L 
Sbjct: 644 PGGRILPPAQFIAAAESFKLIVDVDKEVIRKTFLWLS--LNEGLWDDHCLSINLSGSSLG 701

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              + + + +   +     S I    +E+  + N  R+  +L  LRK G +  LDDFG+ 
Sbjct: 702 AEGMVDFILSQQKRFGVPSSCICFEITETSAIQNRSRAMKMLLDLRKRGFAFALDDFGSG 761

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +   YL  +P D VK +G  +       K  AI++S+  + + +    +A+ +  +  I
Sbjct: 762 FASYGYLKEMPVDYVKIDGCFVKNLASNAKDYAIVKSVNDVCRVMGIETVAEFVENQEII 821

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +L  +G +Y Q   +  P   +S   +L 
Sbjct: 822 DKLEVIGINYAQGYGIGRPQPLDSYQGILA 851


>gi|304394181|ref|ZP_07376104.1| diguanylate cyclase/phosphodiesterase [Ahrensia sp. R2A130]
 gi|303293621|gb|EFL87998.1| diguanylate cyclase/phosphodiesterase [Ahrensia sp. R2A130]
          Length = 589

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 117/568 (20%), Positives = 222/568 (39%), Gaps = 23/568 (4%)

Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A            ER+  A   +   G+ V++W++  D +  +   + +LG+    M   
Sbjct: 5   ANVQALHAQPQTAERRFSADGVLNSVGEAVYEWNLANDYLDWSTGTSDLLGITDTGMMMT 64

Query: 449 IRNWLPYIHINDRDNFRTILDSFV---GYRRGRLQYEFRVRA---ADNQFHWMIIRIRPM 502
            RNW   +     ++    L              Q ++ +      D Q  W+    R  
Sbjct: 65  NRNWEALLVPGSVNSRGAALAESEQTDDGTGVPYQIQYALSGGHLRDGQDVWLEDTGRWF 124

Query: 503 SNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +N   G   R  G+   +TE++K  E +   +  D LTG+ NR      L T+      D
Sbjct: 125 ANPETGRPARAHGVIRIVTERRKREERVDRMSRFDPLTGLLNRARLTVELDTLFSTLV-D 183

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           D    + +++ ++ +  +N V G   GD V+    RRI   L+  DI+ R SG + G++L
Sbjct: 184 DGKPASFILLGLEHFDLVNQVYGFEAGDAVMSEAARRITANLRATDIVGRFSGAKIGVVL 243

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              ++   +      +      PI      I +T SIG  S              A  A+
Sbjct: 244 PECDDQDMLIAGYRMLNVLRNEPIITDCGSIALTISIGGVSIPQHARECRTAFMAANQAL 303

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
             ++    N V  +R    R    +    + E++  A+    ++LV+ PI+     E+  
Sbjct: 304 EESRRNRDNVVAVYRPDPERERLRLEAGIMAENIINALREGRIHLVWQPIVDAETGEVAF 363

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++ +     +I + +F+ IAE L +I+ ++   L+     +               
Sbjct: 364 HEALVRLEEHDGTSIEAGDFVAIAERLGLIRLVDHHALDLALETMKRCSTA------TFS 417

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++++   D E    +   I +      R+ +  +ES    + + +R  +  L  +G  
Sbjct: 418 LNVSNETACDPEWLSKVAHAIHECPDIAKRLIVEITESHAAESDDEARRFINSLADLGCR 477

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIA 915
           + LDDFG   +    L  +PFD +K +G          +    ++S++ +A       + 
Sbjct: 478 VALDDFGAGYTSFRTLKALPFDVIKIDGQFAVDLEHSVENQTFIQSLVKLASLYGARTVV 537

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +  +   K L   G DY+Q      P
Sbjct: 538 EWVEDDETAKMLREWGVDYLQGFAYGRP 565


>gi|88857518|ref|ZP_01132161.1| EAL domain protein [Pseudoalteromonas tunicata D2]
 gi|88820715|gb|EAR30527.1| EAL domain protein [Pseudoalteromonas tunicata D2]
          Length = 719

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/585 (20%), Positives = 244/585 (41%), Gaps = 38/585 (6%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442
           T+I                 ++ S L +  S D +   +     + T    ATI G    
Sbjct: 153 TLINDTFNLIENEIEHTQTEQKYSHLIIESSNDGIISINQQGQIINTNQRAATIFGYKKI 212

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY--------EFRVRAADNQFHW 494
             + G     L   H      F+ + +  + +   +  +        E   R  D     
Sbjct: 213 EELVGSNIMILIPAH------FQKMHNESLYHANNKKAHQGILNKIREVEGRKKDGSCVP 266

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           + + I   SN++     Y+    D+TE       I   AF D LTG+ N      ++ ++
Sbjct: 267 IELTITESSNNDEK--FYVAFIKDVTEAVAYKNSIEKLAFIDQLTGLLNVNGLKRKIASV 324

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                   +L  T+ +ID D  K +ND  G+  GD ++ S  + +  L     ++ R+  
Sbjct: 325 --------SLPCTMNLIDFDSLKLLNDSFGVQFGDKIIQSFAKNLATLSCENLLIIRIKA 376

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            RF ++  S+  S +I      +   +   + + +  + ++     +   +     +E +
Sbjct: 377 GRFILLTQSDKLSTQIE-----LNSLLNKEVLIDKIAVRISFCCCQSEL-NHSDEINEKI 430

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMD 732
           + +E+A+  AK  G        ++     +    + + L  A+E  EL+  + P    + 
Sbjct: 431 QQSEVALRDAKQHGRGSFIDVNLAWVEMVKQRAQLCQQLEHAIEQHELFFYFQPKYNALT 490

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +    EALI+W       I  S F+ +AE+  ++  I+ F++E+    I  W +Q    
Sbjct: 491 HQPASAEALIRWKL-NNEFIPPSTFIPLAEQSHLMPEIDRFVIEKSCETIRFWLNQGLTV 549

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I IN++S+ L D++    +   + +       +++  +E  ++ + E + L + +L+
Sbjct: 550 -LPISINLSSRYLFDDKTISYIFEKVGEYDVPAHLLEIEVTEYGLIEDFESTALNMRKLQ 608

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIE 910
           K GI + +DD+GT  S L  +  +P + +K + S +    + +K   +L +I+ +AK++E
Sbjct: 609 KAGIKVAIDDYGTGHSNLQTILILPIEHLKIDQSFIRLGMTDKKGQLVLENILQLAKSLE 668

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I A+ +     +  L + GC YIQ  + + PL      +LL +
Sbjct: 669 VEITAEGVETAEQLAFLAKAGCHYIQGYYFSKPLSQLDFEQLLAQ 713


>gi|149180268|ref|ZP_01858773.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
 gi|148852460|gb|EDL66605.1| sensory box/GGDEF family protein [Bacillus sp. SG-1]
          Length = 570

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 195/455 (42%), Gaps = 23/455 (5%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I  ++G   D+            + + D+LTG+  RQ                ++  P+
Sbjct: 126 SISHFLGYLIDL----------ERDVYYDSLTGLYTRQYLNMFFEAF----EVSNDRYPS 171

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           + +I++++++ +N  +   +GD ++  +  R+        +  RL G+ F +I       
Sbjct: 172 IFLINLNRFRNVNASV--DLGDFLITEIADRLKTCAGEDGLAVRLHGDEFVVITFDLKTD 229

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKH 686
            +   +A  +   IA PI    +   +TASIG + +   +      ++K A  A      
Sbjct: 230 EQRGQYAEQLLNEIAAPIVTKFQTFHLTASIGISVYDLDQCCNIDTLIKLAGFAKDSVNG 289

Query: 687 RG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G       +  +   +   V I+  L   +  ++  + Y P   +    + G EALI+W
Sbjct: 290 TGSKRYTFCTPEIILKKERSVWIESHLLQELSENKFEMYYQPQYHISTRRLTGFEALIRW 349

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
              K+G IS +EF+ +AE    I  +  ++ E + + I  W  +       + INI+   
Sbjct: 350 KSEKFGFISPAEFIPMAETTGQIIPLGNWIFETVCKQISVWNKKYG-TGFSVAINISPAQ 408

Query: 805 LLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L      + +  ++ K    PS+I    +E+ ++   E    +L ++R  GI + LDDF
Sbjct: 409 FLHYGHDVDNLDHILIKYGILPSQIHFEITETSLIPLTETLVPILAKVRSKGIKIALDDF 468

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S + YL  +P D +K +   +       K   I+++II +A  ++  ++A+ I  E
Sbjct: 469 GTGYSSVLYLRNLPIDIIKIDQVFVRNLTVNSKDNKIIQAIIDLANALDIEVVAEGIESE 528

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  L  +GC   Q   +  P+  +   +LL+E+
Sbjct: 529 EILLLLDSIGCGTAQGYLLGKPMELDHASELLQEK 563


>gi|160899258|ref|YP_001564840.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160364842|gb|ABX36455.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
          Length = 877

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 210/450 (46%), Gaps = 9/450 (2%)

Query: 508 DILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +    +   +++ ++ ++S E +      D+LT +  R      +      +A +     
Sbjct: 426 ETSSLVSAFHNMAQRLQESFEHMRTLLQYDSLTQLLTRAGL---IEQADAAAAANTPCPA 482

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISEN 625
            + ++++  ++ + D +G   G+ +L ++  R+       P +LAR + N F ++ + + 
Sbjct: 483 ALCLLELQNFRSVRDDVGHGTGEQLLRAVAERLRNHHLQFPALLARTASNEFAMLWLHDC 542

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++ D    + +    P ++ + +I + A  G  S         E L+NA +A+  A+
Sbjct: 543 TPQQMQDKCRHLLEIFDQPFSVGKDDIVLRACAGAVSGELLPGVLPEWLRNASIALGEAQ 602

Query: 686 HRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                 +      + +      +  +L  AVE +EL + Y P++ L    +VG EAL++W
Sbjct: 603 RGSHPFLLFEPSLAQKMLGRTQLAMELRQAVERNELRVFYQPVVDLATGSMVGAEALVRW 662

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           + P  G +    F+ +AEE  +I ++  ++L   A DI S   +       + +N+++++
Sbjct: 663 NSPTRGMVPPGVFIPVAEESDLILSVGEWVLRTAAHDIASHLPRLPA-DFELHVNMSARE 721

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L+ ++    ++  ++ +      + L  +ES+++ + + +   +  +R +G+ + +DDFG
Sbjct: 722 LIQSDFASTLEQALATSGLPARLLTLELTESMLLDDSDATLQRIAAIRALGVKIAIDDFG 781

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L+YL  + FD +K + S +     +E   +I+ +++ +A+     ++A+ +  + 
Sbjct: 782 TGYSSLAYLSRLRFDCIKIDQSFVGQLPESESDKSIVTAVLRIAQGFGVKVVAEGVEEQA 841

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             K L  +GC + Q      P+    +L+ 
Sbjct: 842 QAKLLHALGCKHAQGYLFERPVPLAQMLEY 871


>gi|289640919|ref|ZP_06473089.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia symbiont of Datisca glomerata]
 gi|289509234|gb|EFD30163.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Frankia symbiont of Datisca glomerata]
          Length = 734

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/594 (20%), Positives = 243/594 (40%), Gaps = 14/594 (2%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +I     G    I        I  V    +  + +             +   +W+WD
Sbjct: 131 ARTLIGGRPAGFGQTIADSFVLYEITDVTERRHEEETLRLRERWLRHVETIARTGIWEWD 190

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +V + +  + ++  +LG  + +       +   +H +DR       D  +      ++  
Sbjct: 191 LVTNEMEWSDELLAMLGYPTDT-RIDYDAFRLLVHPDDRATVEDAFDQAITTVT-PVEVT 248

Query: 483 FRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
            R+  AD      +  R   ++  +G  +R +G A+D+TE  +    +   +  + LT +
Sbjct: 249 LRMYLADRVTECVLEWRGDVLTGDSGTPIRIMGTAHDVTELVRIRHELAHVSVHEPLTEV 308

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR++    LT  L            ++++DID +K +ND+ G +VGD V+ S+ +R+ E
Sbjct: 309 LNRRAVTVLLTERLATGVDRTG---ALLLVDIDNFKIVNDLRGHSVGDTVMRSVAQRLAE 365

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L     + RL  + F ++L S +    +A       +     I +    + VT ++G  
Sbjct: 366 TL-PAAAIGRLGDDEFAVVLHSGDGLEALAVADTLREQVARYAIMVDGFAVRVTVTVGVV 424

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
             ++        L +A LA+  AK  G N  + F             + + +  A++   
Sbjct: 425 PLSAVG-DCDTALAHAGLALTEAKEAGRNCAKLFTAERHEYLTRRALMVQRVRDALDAGL 483

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L   PI+ L   E+ G E L++    +   I  +EFM +     ++ +++ +++++  
Sbjct: 484 LTLQVQPIVDLASHEVQGYEVLLRLHDGQHPEIGPAEFMSVLAHSDLVLSLDRWVVQQTV 543

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             + S   +     + + +NI+ + + D    + + + +      PS++ +  +ESV + 
Sbjct: 544 AALASVAARG--ERLRLHVNISGRSVEDAGFADFVLSELRAARVDPSQLGIEIAESVAVA 601

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897
             +  R L   L   G   TLDDFG       YL  +PF  VK +G  +    ++     
Sbjct: 602 AADAVRQLAETLTGAGCRFTLDDFGVGLGSFVYLRNLPFTNVKIDGDFLRHVDTSPADAV 661

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++ +++ +A+ +    IA+ I  E     L  +G DY Q  H+  P     +L 
Sbjct: 662 LVDAVVRVARCLGMYTIAESIDRESLAPALRDLGVDYAQGFHLGPPRPLTELLA 715


>gi|117919073|ref|YP_868265.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611405|gb|ABK46859.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 728

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/575 (20%), Positives = 233/575 (40%), Gaps = 23/575 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                 +I   +     +  + +   +               D               L 
Sbjct: 156 FQHAAVMIGSAMELTRIAHDMLASEHKYREVFNQLPLACALLDKQNQLTMLNKVALQTLP 215

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +  G       +    +   +       L        G+   E  ++ ++ Q  W+ +  
Sbjct: 216 VQHG------YDLFSMVREEEHAMLTDTLHMVREGVLGQAWCELPLK-SNLQLDWLRLSF 268

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +  +   +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L    
Sbjct: 269 SQIHGNKDTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---Q 322

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           T D +   V  ID+D+++ IN+V G   GD +L  L  R+ +L++  DI+ARL G+ FG 
Sbjct: 323 TKDEMPTCVAFIDVDQFQVINNVSGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG- 381

Query: 620 ILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           IL+   N       A  +   +A        R   V+ S+G A +  S      ++ +A+
Sbjct: 382 ILMHYCNVDSAQHIAKRICTQLATHEFIWENRCHNVSVSMGIAKFDRSASDIYTVMSHAD 441

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEE 734
            A   AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L  EE
Sbjct: 442 AACRLAKDKGRNGWHLYSAKDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLSREE 501

Query: 735 I-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             + LE L++        +S + F+  AE   +   ++L++++ + +   S  D      
Sbjct: 502 SGLHLEVLLRMVQANGTIVSPAIFLPAAERYNLAAKVDLWVIDNLLKWGSSHLDIWQQLE 561

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N+++  L D+E    ++  +        ++ +  +E+  +   +++  L+  LR 
Sbjct: 562 L-VSVNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIEVLRP 620

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +   L LDDFG   S  +YL  +  D VK +G  +      E   AI+++I  + +++  
Sbjct: 621 LNCQLALDDFGAGFSSFAYLKRLNVDYVKIDGQFVINLCEDEADQAIIKAICQLGQDMGF 680

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++A+ +       +L  +G DY Q   +  P+  
Sbjct: 681 DVVAEFVESTEIATKLKSLGVDYAQGYAINKPMPL 715


>gi|167568775|ref|ZP_02361649.1| eal/ggdef domain protein [Burkholderia oklahomensis C6786]
          Length = 806

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/622 (18%), Positives = 223/622 (35%), Gaps = 40/622 (6%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
           T R    I+    + G++++ +L  F + +  L  G     +     R   A++  GD V
Sbjct: 193 TLREPAAIVLALGLFGMIVLALLPVFRIRRLALRLGEAEGALAMSEARARAALVAVGDGV 252

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH---------INDRDNFRTILD 469
                        P    ++G+ +    G        +           +  D     L 
Sbjct: 253 IFTGRAGRVECLNPAAEQLIGMLADDCRGRPLITTLRLSRANGDAADSPDSSDLPDASLG 312

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IANDITEQKK 524
                       +  +  AD     +      ++  +    R  G     +   +  +  
Sbjct: 313 DIEDGG----SCDVMLHRADGGEIAVRATASSIAPPSARTQRTHGSGRVLVLKSLATEHD 368

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +  +      D LTG+PNR  F   +   L   A        ++ +D+D+++ +ND  G
Sbjct: 369 FVRRLAWQTTHDPLTGLPNRTEFERHVDFALAGDARGP---VALLFVDLDRFRIVNDTCG 425

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L +L  R+       D++ARL G+ F ++L + + +  +              
Sbjct: 426 YGAGDAMLAALAARLVACAASADVVARLGGDEFCVLLDACDEAAAVCAAERLRASVDGFV 485

Query: 645 INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                +  +VTAS+G A            + ++ A +A   AK RG N V+         
Sbjct: 486 FVWDGQPFSVTASVGVALLGTPERARRVDDAVRLAGIACDVAKARGRNRVQLADPLDREL 545

Query: 703 DRV----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW--DHPKWG 750
                       +  A+E  +  L   PII        GL      E L++      + G
Sbjct: 546 AHHISDVSWCARVRQALEFDDFCLYVQPIIDTATHGATGLQHASRGELLLRMGTLGEREG 605

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
                 F+  AE   ++  I+ +++  +   +     +         IN++   + D   
Sbjct: 606 IAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTPYRRFTE---YAINLSGMSIGDERF 662

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +     +T  +P+ I    +E+  + N   +   +  L+ +G    LDDFG   +  
Sbjct: 663 LDYVLDQFVRTGVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGAGMASF 722

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P + +K +GS +        +  I+ SI  +   +    IA+ +     +++LT
Sbjct: 723 SYLKQLPVEYLKIDGSFVADIANDAASLDIVASINDIGHAMNCKTIAEFVDSAATLQKLT 782

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G DY Q  ++  P+ ++   
Sbjct: 783 ALGVDYAQGYYIGRPVPWSEAA 804


>gi|119944954|ref|YP_942634.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863558|gb|ABM03035.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 932

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/539 (19%), Positives = 210/539 (38%), Gaps = 40/539 (7%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D   D +    +  TI G +   + G   + +   H ++ +     + + +  ++   + 
Sbjct: 415 DTRGDIIYVNDEFCTISGYSREELLGNNHSIVR--HPDNSNAIFKNMWTTITAKKV-WKG 471

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             + RA D   +++   I P+ + +G I+ YI    D+TE  +  + I    ++D LTG+
Sbjct: 472 TLKNRAKDGSTYYVKTLIMPILDDSGQIISYIAARTDVTELIEKDKIIRQQ-YKDKLTGL 530

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR + +D+L  I        N   T+++I+ID++  IND  G   GD  L      +  
Sbjct: 531 QNRNALIDKLKKI-------KNEDATLILINIDRFSDINDYYGYEKGDKTLGLFASVLKN 583

Query: 602 LLKF-----------PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
                             + R+SG+ F I+     +       A  +         +L+ 
Sbjct: 584 KYSEFFKINGEIVKIRGEIFRISGDEFAILCEHSLDKETKEMIAGLIIDLENEVYEILDD 643

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSFRSDRVMI 707
            IT+  S G AS   +     E+   A +A+   K          ++  +    +D + I
Sbjct: 644 NITLLLSCGVASGAKN-----EIYNLAHIALKENKKDNNIVTFFNDNMNLYRKIADNIKI 698

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +   + N +    Y  I+    ++I   E LI+        ++   F+  A++  + 
Sbjct: 699 IASIKEGILNDKFVPFYQGIVNNKTKKITKYECLIRLKEENGKVLAPYFFLEHAKKAKLY 758

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + + M+ +                    IN   +D+    +   +   + +     +R
Sbjct: 759 YKLTMIMIRKSFEKFA-------GNNYDFSINFTLQDIQSVTVVSMLMDYLEQYQC-GNR 810

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +   ES  + N       + +++K G  + +DDFG+  S   YL  +  D +K +GSL
Sbjct: 811 LIIEIVESEGIENFNELSDFIKQIKKYGCKVAIDDFGSGYSNFHYLSKLDVDYIKIDGSL 870

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           +        ++A + SI+  AK +    IA+ +  E     L  +G D+ Q  + + P 
Sbjct: 871 IKNIDNDPSQLATVESILLFAKKMNIKTIAEFVETENIYDILNDLGVDFSQGYYFSKPQ 929


>gi|319936203|ref|ZP_08010623.1| hypothetical protein HMPREF9488_01455 [Coprobacillus sp. 29_1]
 gi|319808777|gb|EFW05310.1| hypothetical protein HMPREF9488_01455 [Coprobacillus sp. 29_1]
          Length = 733

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/438 (22%), Positives = 191/438 (43%), Gaps = 12/438 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K    +   AF D+LTG+ N Q F      +L      +N    V+ IDID +K IND
Sbjct: 302 HRKHKRVVENLAFYDHLTGLYNYQKFKMEGQKLLAQ----ENRSWAVIYIDIDGFKIIND 357

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD VL  L   + + +    I   ++ ++F + +   +N   I      + + +
Sbjct: 358 LNGYQFGDFVLKELAALLEKYVTEYCIACHMNADQF-LFMCHYHNKKDIVKICQEINQDL 416

Query: 642 AMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
              ++    E       G       K   T   ++  + LA+    H    +   +    
Sbjct: 417 RQFLHNNGYERETVMKFGICCQEDDKHIHTMDHLVDCSHLALNALSHNVNEYYYFYHSQM 476

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I+  +  A+EN E      P   +  E+I+G EAL++W   +   I  ++F
Sbjct: 477 REHLLKEADIESKMDKALENKEFVFFLQPKFNVNGEKILGAEALVRWIDSQQQMIMPNDF 536

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+   I  ++ ++ E + + + S R   +   I I +NI+   L  ++  E    +
Sbjct: 537 IPLFEKNGFILKLDEYVFESVCQYMSS-RISQHQNVIPISVNISRLHLYQHDFIERYVKI 595

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K       ++L  +E++++ + +R + ++  L+  G   ++DDFG+  S L+ L  +P
Sbjct: 596 KEKYQIPDQLLELEITENILLEDVKRVQTIVAELQAHGFLCSIDDFGSGYSSLNLLKDLP 655

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K +   +    +  +   I++S+I MAK+I+   +A+ +  +   + L  +GCD I
Sbjct: 656 INVIKLDRFFLKDNYNVVRSYEIIKSVINMAKSIDIYTVAEGVETKEQQQFLQTIGCDMI 715

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    + PL  +   K L
Sbjct: 716 QGYIFSKPLPIDEFNKYL 733


>gi|254501638|ref|ZP_05113789.1| CHASE2 domain family [Labrenzia alexandrii DFL-11]
 gi|222437709|gb|EEE44388.1| CHASE2 domain family [Labrenzia alexandrii DFL-11]
          Length = 908

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 249/636 (39%), Gaps = 28/636 (4%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G    + ++  ++++        +     L +      L+    +++I     + + +  
Sbjct: 286 GLSTKLAVLVGFMVLLELGGYFALQERPVLISTASAQVLLVASAIVIIFQELGLRKLISQ 345

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               SQ   +           S D +   D       ++     + GL +     P  + 
Sbjct: 346 LYQISQ--RNTVRMLGQVFDDSFDAIMVIDRSEKITASSEVARKLFGLKA----IPNASG 399

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP----MSNSNGD 508
              +     D+   +L      +        ++   D     +   +      +++  G 
Sbjct: 400 REVLPTELVDDAVAVLSETTKGKPEP--KLLKMNGEDGLLRVIEYVVTRSEKTVTSKKGK 457

Query: 509 ILR-----YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             R           DITE+ ++ + +   A  D +TG+ NR  F D +   ++ +  D  
Sbjct: 458 HARENEALACLTCRDITEEYEANKRLAYLARFDPVTGLFNRNGFEDEVPETVESTGFDGQ 517

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   ++   I    +I   LG + GD +  ++  R+ +        A L+ + F    IS
Sbjct: 518 I-LCLVQFSISNLDQIIASLGFSYGDLLRKAIADRVTQHFGTEVTWAALTADVFAAAYIS 576

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E   +    F   +++ +     +    I+V    G+           E+LK +  A+  
Sbjct: 577 EEGEVCAERFLETVQQVVGKDYMIEGSRISVRLDFGYIV-DHYASEIDELLKKSGNALAL 635

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           ++        +FR     + +    ++ +L  ++  +EL +VY P+I L   EI+G+EAL
Sbjct: 636 SRRSAQLACVAFRPEMNDTLQRRRSLETELFKSISRNELRMVYQPLIDLRSREIIGVEAL 695

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W H + G IS  EF+ I+EE   I  +  + L R   ++  W        I + +N++
Sbjct: 696 LRWRHGELGEISPVEFIPISEENGFIVELGAWTLHRSMEEVGQW-----DSNINLSVNVS 750

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +      ++   ++  +  T +   R  L  +ES+ +      R  +  L ++G   +LD
Sbjct: 751 ALQFSRGDIVATVEDALKATKFPAKRFDLEITESLFIDETIDVRSSMQELAELGCCFSLD 810

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   PF  +K +   ++   + +K +A++ +++ MAK      + + I 
Sbjct: 811 DFGTGYSSLAYLQNYPFSKIKLDRMFISKVTTNKKDVALIEAVLHMAKAFGMETVMEGIE 870

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E   + L  +GC   Q      P+    + +LL+ 
Sbjct: 871 TEEQTETLLGLGCRVGQGYLFGRPMSAADLAQLLRR 906


>gi|126175380|ref|YP_001051529.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125998585|gb|ABN62660.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 768

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/441 (23%), Positives = 201/441 (45%), Gaps = 18/441 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    L      +     L   ++++DI  ++
Sbjct: 334 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQHL------ADLKHELAGAMVLLDIKHFR 384

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +LV   RR+ +L   PD+LARL G+ F ++         +       
Sbjct: 385 HINDIIGFANADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLL----KS 440

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++T   G      +      +++ AE+A+  A             
Sbjct: 441 LDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQG 500

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I  DL + +  ++LYLV+ P + L   +  G EALI+W HP  G I   E
Sbjct: 501 ADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  ++ ++L++  + +++W+ +     + + IN+++ DL+D  L   + +
Sbjct: 561 FIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRG--MALKLAINLSAHDLVDTRLPNQIAS 618

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L R R +G+S+ +DDFGT  S L+YL  +
Sbjct: 619 LLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKIL 678

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK + S +       + + I+ + I +   +  T++A+ +     +  L  + CD 
Sbjct: 679 PVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVDILRNLNCDI 738

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL         + 
Sbjct: 739 IQGYVFSKPLKAAEFDLWFEA 759


>gi|86742298|ref|YP_482698.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86569160|gb|ABD12969.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 819

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/445 (22%), Positives = 198/445 (44%), Gaps = 16/445 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +      D LT + NR  F  RLT  L  ++  D     V+  D+D ++ +ND L
Sbjct: 354 EAEHEVRHWTSHDPLTELANRTLFHQRLTDALA-ASRHDGRDVAVLYCDLDDFRVVNDSL 412

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L ++ +R+   +   D +ARL  + F ++L            A  +  ++  
Sbjct: 413 GHAAGDHLLRAVGQRLRHCVGTSDTVARLGSDEFAVLLDGGRELP--ETVAERVLAALRQ 470

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF-----RVS 698
           P         V  S+G      ++ T+  +L+ A+ A++ AK  G N +  +       S
Sbjct: 471 PAQAAGHLWPVRGSVGLVVACRTQETTEALLRRADTAVHTAKRTGKNRLVVYRPGLCPPS 530

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       +   L     ++   + Y PI+RL D   V LEAL +W  P  G +    F+
Sbjct: 531 AGTHLADALATALRRGGRSAGFDVHYQPIVRLRDRSPVALEALARWTEPGRGPVPPGTFV 590

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+  ++ A++  +L +   ++           + + +N+++  + D  L + +   +
Sbjct: 591 AAAEDGGIVGALDDMVLTQACAEVAV---AYPASALRLHVNVSASRIADTTLLDSVAQAL 647

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + + + P R+ +  +E+  + +   +R +L  +R +G+++ LDD G   S L+ L  +P 
Sbjct: 648 AASRFDPGRLVVEITETSRIDDLRGAREVLNEVRALGVAVALDDVGAGHSTLAALHQLPV 707

Query: 879 DTVKFNGSLMTGSTEKRIAIL---RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           D VK + +L+         +    RS+I +A  +   ++A+ I  E  I EL  +GC+  
Sbjct: 708 DVVKLDRTLLEPPPRDGHRVATMRRSMISLAHALGAVVVAEGIEREGQIAELEELGCELG 767

Query: 936 QDSHVASPLGFNSILKLLKERFPLV 960
           Q    A P    S+   ++   P  
Sbjct: 768 QGYFFARPGPLASLT--IRRWVPPT 790


>gi|328470664|gb|EGF41575.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 636

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 188/443 (42%), Gaps = 7/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K +   +      D  TG  NR +    +   L  S    +    V+ +     
Sbjct: 187 QEIDRRKAAERQVNYQKTHDQGTGFLNRAALEAVVEDTL-QSLEHGHQSLIVINVGFSNA 245

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G    D++L    +R+G       I  R S N   ++L  E+   K+ +    
Sbjct: 246 RSIQTRYGFEAFDEILKEFRKRLGTNDSNYFITGRPSSNDLVLLLWGEDADSKLHNLLDK 305

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           +         + + E+ + + +G      S  ++ ++L+NA  AM   K  G        
Sbjct: 306 ITNISVGNFYINDTEVHLHSYVGVVQAHRS-SSAKQLLQNACYAMLLCKESGEAYSYFCE 364

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +   ++   ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+ 
Sbjct: 365 SHTHELNNHNQLESYLLQAVRNDDLMLYFQPKVNPHTHKWIGAEALLRWRHPVLGDVSNE 424

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +        + +N++   L +    E ++
Sbjct: 425 ALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELF--DNFKVAVNVSPIQLQNVNFAEQVE 482

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L +L K+G++L+LDDFGT  +  SYL  
Sbjct: 483 HLLEAFHLPARFLELEVTESALIADEVVARTTLKKLNKLGVTLSLDDFGTGYASFSYLKK 542

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +     ++   AI+ SII +AK +E  ++ + I      + L   GCD
Sbjct: 543 YPFDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLELQVVIEGIESPQQEQFLIGEGCD 602

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q      P+  N   + L  +
Sbjct: 603 IGQGFLYGKPMPCNEFEQSLFNQ 625


>gi|134094936|ref|YP_001100011.1| hypothetical protein HEAR1729 [Herminiimonas arsenicoxydans]
 gi|133738839|emb|CAL61886.1| hypothetical protein; putative EAL and GGDEF domains; putative
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 709

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/475 (22%), Positives = 202/475 (42%), Gaps = 15/475 (3%)

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL----CNAFQDNLT 539
           RV     +     I+   M N  G I  +  ++N I E K+  +         A  D LT
Sbjct: 226 RVIHKPVRTIIASIQANGMPNYKG-IYEFEFLSNVIREAKQKEQEKQIEISYQASHDELT 284

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR+ F   L + L    T      T++ +D+D++K +ND  G   GD +L  LTR +
Sbjct: 285 GLINRREFERCLQSALHDIRTQHGTH-TILYMDLDQFKIVNDTCGHHAGDILLQQLTRVL 343

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            E L+  DILARL G+ FG++L +      +       + +        ++  +V  SIG
Sbjct: 344 KEKLRQNDILARLGGDEFGVLLRNCPAEPALNVAESLRQTASEFRFAWNDKLFSVGVSIG 403

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAV 715
             +++  +++ +E+L   + A Y AK +G N +            R  ++     +  A+
Sbjct: 404 LLTFSDDELSLNEILSIVDGACYLAKEKGRNRIHVCHPDDGELSERKSQMGWVAKISNAL 463

Query: 716 ENSELYLVYHPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           E + + L    I  L    ++I+  E L++    +   +  S F+  AE   ++  I+ +
Sbjct: 464 EENRMVLFKQTIAPLQLSQQKIIHFEVLLRMLDEEGKLLPPSFFLPAAERYNLMTRIDFW 523

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++        +            IN++   + D  L   ++        SP+ I    +
Sbjct: 524 VIKTAFSYYRDFC-TDPAVAYTCSINLSGATVGDERLIAYIREQFQAYGISPAGICFEIT 582

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+  + N +R+  L+  L++IG    LDDFG+  S   YL  +P + +K +GS +     
Sbjct: 583 ETAAIANLDRAVTLMQDLQQIGCRFALDDFGSGMSSFGYLKKLPINYIKIDGSFVKDMLH 642

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                A++ +I  +   +    IA+ +  E  +  L  M  ++ Q   +  P   
Sbjct: 643 DRIDRAMVEAINNIGHVMGIQTIAEFVEDEKTMIALQEMNVNFAQGYGIGKPEPL 697


>gi|84392294|ref|ZP_00991721.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84376414|gb|EAP93294.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 635

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 103/444 (23%), Positives = 192/444 (43%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++ + + I      D  TG  NR +F  RL   L       +    V+ I     
Sbjct: 187 QEIDKRRAAEQKINFQKNHDIGTGFLNRTAFESRLNNKLSSQQRLTDSSFAVIHIGFTNG 246

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G    D VLV   +RI  +     + AR +     +    ++   ++ +    
Sbjct: 247 RRIQARYGYDALDQVLVEYRKRIDSISDIEVLTARPTSIDLVLAFSVKDLHQRLEELCQT 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + K      ++   ++ + A IG A  T ++  +  +L+ +  AM   K  G      S 
Sbjct: 307 LVKVGHSEFDIDSDKVHLHAFIGIA-ITDNEDDAESILQKSSEAMLACKDSGQKFAYYSQ 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +S    I+  L  AV N +L L + P +  +    VG EAL++W HP  G+IS+ 
Sbjct: 366 SHTEQQSHINKIEGYLLQAVRNDDLMLYFQPKVCPLTHRWVGAEALLRWRHPVLGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +   +    + +N+++  L +    E + 
Sbjct: 426 TLIHMAEQNGLIFEVGSFVLRNAIEKAKEWSE--YVEDFKMAVNVSAIQLKNVHFAEQVV 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+      P  ++L  +ES ++ +   ++  L  L  IG++L+LDDFGT  +  SYL  
Sbjct: 484 HLLETYHLEPHFLELEVTESGLIADEVVAKNTLESLHDIGVTLSLDDFGTGYASFSYLKK 543

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFDT+K + S +     + +   I+RSI+ +AK ++  +  + I  E+  + +   GCD
Sbjct: 544 FPFDTIKIDKSFIDQMLNSHEDSEIVRSIVQIAKKLDLKVTIEGIESEVQEQFIINEGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+        L  + 
Sbjct: 604 VGQGYLYGRPMPSQEFEHSLINQN 627


>gi|289644113|ref|ZP_06476208.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia
           symbiont of Datisca glomerata]
 gi|289506082|gb|EFD27086.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia
           symbiont of Datisca glomerata]
          Length = 1200

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 97/440 (22%), Positives = 199/440 (45%), Gaps = 14/440 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                   +D LTG+ NR          +  +         ++++DI++++++ND LG  
Sbjct: 160 RWNHLLVVRDLLTGLANRAGLAHVAQPAIAQAVATGR-HAVLVLLDINRFREVNDALGHP 218

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-------NSLKIADFAIAMRK 639
            GD +L  + R++  +   P ++ RL G+ F ++L               +      + +
Sbjct: 219 AGDRLLQVVARQLRNVATDPALVGRLGGDEFAVVLCGLELSDEPAAAHEHLRAIGRTVIR 278

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
            +  P  +   ++ V  S G A+      T   +L  A+ A++ A        V    + 
Sbjct: 279 QLRGPFRIDGVDVEVEVSAGVAAAPMHGTTLGTLLPAADAALHAAGRESERVGVWDAGMG 338

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + +   L  A+   EL L Y P++      I G+EAL++W HP  G ++   F+
Sbjct: 339 GVCPSELALHAQLRAAITGGELVLHYQPLLSRQTGRIAGVEALLRWRHPSRGLLAPGSFL 398

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  +  ++L+   R    W        I + +N++++ L+ ++L + +   +
Sbjct: 399 PMAERSTLIIDLTEWVLDEALRQCADWARAG--EHIPVSVNLSARMLVRDDLPDLVSETL 456

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+       + L  +ES ++  P R+  +L  LR  G+ L+LDDFGT  S +  L  +PF
Sbjct: 457 SRHGLPADVLTLEITESALVTQPARAAAMLRELRTRGVKLSLDDFGTGYSSMEILKALPF 516

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK +   ++ +      +AI+RS++ +   +   ++ + +     ++ L  +GCD +Q
Sbjct: 517 DEVKIDKGFVSDAHGSLPDVAIVRSVLELGHRLGLRVVGEGVEDARAMRMLMELGCDLLQ 576

Query: 937 DSHVASPLGFNS-ILKLLKE 955
              ++SP   ++ +L +L+ 
Sbjct: 577 GDAISSPQPPSAHLLTVLRA 596


>gi|257093080|ref|YP_003166721.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045604|gb|ACV34792.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 745

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 224/526 (42%), Gaps = 25/526 (4%)

Query: 444 SMHGPIRNWLPYIH-----INDRDNFRTILDSFVGYRR---GRLQYEFRVRAADNQ-FHW 494
            +     ++   IH     I+D       L + +  R    GR         ++ + F  
Sbjct: 225 QVIAAAGSFRSLIHHRLKEIDDL-RIVAALTAALESRVSSIGRHSATLYFAKSEQEGFAA 283

Query: 495 MIIRIRPMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            I   RP+   +  ++        +  +    +  +  +AF D   G+PNR + +  L  
Sbjct: 284 FIDAARPIPPLDQHLIEVFCSNIALCAKNVDLVAELRRDAFFDRQLGLPNRNALIVELNQ 343

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
               +    N    + V+D+D++  +ND+LG   GD VL     R+ E       +ARLS
Sbjct: 344 ---RAQIAPNGDGVLAVVDVDQFATVNDILGQHYGDLVLKMTGARLREFFGPVAYIARLS 400

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++   E  + +            A P +L+    +V+AS G     +     +E 
Sbjct: 401 GDAFAVVGQREVVTAEAIGLC------FAEPFSLMGIRQSVSASAGIVFLNAGFRPGAEY 454

Query: 674 LKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +++A LA+  AK  G   + ++     +    R  + +DL  A E   L+LVY P I L 
Sbjct: 455 VQDAYLALKRAKAAGLAQIVTYTADLANEVRSRARLLDDLRRAFEGHRLHLVYQPQIDLA 514

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              ++G EAL++W  P    I    F+ +AE+  +I  I  ++L      +   R     
Sbjct: 515 TSRVIGAEALLRWRLPDGTMIPPDRFIPLAEQSGLIIDIGHWLLREAMLALHRLRAA-GA 573

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P + + +N++  +L   +  + +  ++ +T      ++L  +ESV +G    +   L  L
Sbjct: 574 PNLRMAVNVSPIELRRPDFADSVLQILGETATPADAVELEITESVAVGGLAAAIETLAPL 633

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNI 909
           R  GI++ +DDFGT  S LSYL  +P D +K + S + G    +    I R+II + + +
Sbjct: 634 RDSGITVAIDDFGTGYSSLSYLERLPADRLKIDRSFVQGLERGQGAARIPRTIIALGREL 693

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +  E     +  +GC   Q  H A P+     +  L  
Sbjct: 694 GLRVIAEGVENESVALAVRALGCHEAQGYHFARPMVEADFVAWLAA 739


>gi|167561543|ref|ZP_02354459.1| eal/ggdef domain protein [Burkholderia oklahomensis EO147]
          Length = 806

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/622 (18%), Positives = 223/622 (35%), Gaps = 40/622 (6%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
           T R    I+    + G++++ +L  F + +  L  G     +     R   A++  GD V
Sbjct: 193 TLREPAAIVLALGLFGMIVLALLPVFRIRRLALRLGEAEGALAMSEARARAALVAVGDGV 252

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH---------INDRDNFRTILD 469
                        P    ++G+ +    G        +           +  D     L 
Sbjct: 253 IFTGRAGRVECLNPAAEQLIGMLADDCRGRPLITTLRLSRANGDAADSPDSSDLPDASLG 312

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IANDITEQKK 524
                       +  +  AD     +      ++  +    R  G     +   +  +  
Sbjct: 313 DIEDGG----SCDVMLHRADGGEIAVRATASSIAPPSARTQRTHGSGRVLVLKSLATEHD 368

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +  +      D LTG+PNR  F   +   L   A        ++ +D+D+++ +ND  G
Sbjct: 369 FVRRLAWQTTHDPLTGLPNRTEFERHVDFALAGDARGP---VALLFVDLDRFRIVNDTCG 425

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +L +L  R+       D++ARL G+ F ++L + + +  +              
Sbjct: 426 YGAGDAMLAALAARLVACAASADVVARLGGDEFCVLLDACDEAAAVCAAERLRASVDGFV 485

Query: 645 INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                +  +VTAS+G A            + ++ A +A   AK RG N V+         
Sbjct: 486 FVWDGQPFSVTASVGVALLGTPERARRVDDAVRLAGIACDVAKARGRNRVQLADPLDREL 545

Query: 703 DRV----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW--DHPKWG 750
                       +  A+E  +  L   PII        GL      E L++      + G
Sbjct: 546 AHHISDVSWCARVRQALEFDDFCLYVQPIIDTATHGATGLQHASRGELLLRMGTLGEREG 605

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
                 F+  AE   ++  I+ +++  +   +     +         IN++   + D   
Sbjct: 606 IAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTPYRRFTE---YAINLSGMSIGDERF 662

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +    ++T   P+ I    +E+  + N   +   +  L+ +G    LDDFG   +  
Sbjct: 663 LDYVLDQFARTGVGPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGAGMASF 722

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P + +K +GS +        +  I+ SI  +   +    IA+ +     +++LT
Sbjct: 723 SYLKQLPVEYLKIDGSFVADIANDAASLDIVASINDIGHAMNCKTIAEFVDSAATLQKLT 782

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +G DY Q  ++  P+ ++   
Sbjct: 783 ALGVDYAQGYYIGRPVPWSEAA 804


>gi|118590771|ref|ZP_01548172.1| signal transduction protein [Stappia aggregata IAM 12614]
 gi|118436747|gb|EAV43387.1| signal transduction protein [Stappia aggregata IAM 12614]
          Length = 601

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 104/448 (23%), Positives = 193/448 (43%), Gaps = 8/448 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K +       A QD LT I NR +   RL  +L L          ++ ID+D++K I
Sbjct: 154 SALKAAKIEAEKKALQDPLTEIANRGALHRRLEDVLHLPDR--GQMFALLHIDLDEFKSI 211

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G + GD +L+     +       D+ ARL G+ F + L    +  ++   A+ +  
Sbjct: 212 NDNFGHSAGDMILLQTAEAMTSFCGPNDLPARLGGDEFALFLAEPPDKEELHAMALRLLN 271

Query: 640 SIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRV 697
           +IAMPI        VTASIG   +       +  ++ ++++A+Y AK  R    + S  +
Sbjct: 272 AIAMPIRYNGHSCQVTASIGVVLFHPGQVQNADRLIAHSDIALYDAKTTRSSVKLLSKEM 331

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +   +   +   ++ S+    + P I  M   + GLE + +W   K G +  + F
Sbjct: 332 IRRHEETSRLISLIERGLKLSQFVPYFQPQIDSMTGGVCGLEVVARWQTEKEGVLPPARF 391

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  A    ++  I+  +  +       W+         + +N+ + +L        +Q  
Sbjct: 392 LETATRANIMSEIDRQVRCKAFTHFAEWKSDGKDIG-KLSLNVTASNLRSEAFAAILQTE 450

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++    +P  I+L   ES++    ++        L + G +L LDDFGT  S ++ L   
Sbjct: 451 LADAGLTPGDIQLELLESILFDQSDQELIAQCRNLEQAGFALALDDFGTGHSSIATLIET 510

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P  T+K + S ++G     K   I  +++ MA+N+   ++A+ +    +++ L   GC  
Sbjct: 511 PVATLKIDRSFVSGLDRNPKMQRIAGAMLAMAQNMGLDVLAEGVETREELEFLENCGCRL 570

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
            Q  + + PL    I K L    P +K 
Sbjct: 571 FQGFYFSPPLSAVEIRKWLDVWAPDLKR 598


>gi|330821950|ref|YP_004350812.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327373945|gb|AEA65300.1| Diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 995

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/953 (16%), Positives = 319/953 (33%), Gaps = 45/953 (4%)

Query: 14  AFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR 73
            +L+  +  +            ++S     LD       +++  +      A      + 
Sbjct: 28  IYLVPAILAISTALFFTISPSGDVSIETTPLD----FHAFIDGSDRASPAEALRALREAP 83

Query: 74  RIEVSASSIRHRGDWAVFALA--NTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVT 131
                 + +     W +      N +    + L                + G+   +   
Sbjct: 84  VTGRFGTHLSEHPVWILLDAQPVNPAADSRDYL---AFASRHAKSLSCWNAGTLAPLGAA 140

Query: 132 PSEGFSLDRIPNSDSDVFRI-TINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTL 190
                       +     R+ T   GA +      S P                   F  
Sbjct: 141 DRVSPQGAMQLAAAGFALRLETAAAGAPILCRGLYSGPAYVTASRLTGRALTAARLQFER 200

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVV--LGYISIDFGFLSKLVNLPSG 248
              +I G    LAIF+ +  M+NR    +           L   ++ F        L   
Sbjct: 201 NASLIGGGLLTLAIFIFVTAMINREWTYVVFSVWLVGNQRLAANALGFDNAWLGHTLSPA 260

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
            + + R  S    +   I+ + ++    R       + +           +     ++  
Sbjct: 261 WIDLVRQLS---FAIYYIVTVSLFGRLFRREIARVSLQWLLKTVQLGGLLLLLLSLVLPY 317

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQ 368
                 L ++       ++Y       RA      W +  + F+   +           +
Sbjct: 318 RQFVPALWALAGAGMLLLLYLLGTLLLRARSRTVIWYVASLSFVLFAILSEVFAAALGTR 377

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS--DGERQSLAVLGSGDIVWDWDIVRD 426
               G   ++  L+   +    +A    +                  +   ++  D    
Sbjct: 378 MLFGGLNPVVTALVSSMMAAFAIAEQMRADRAQRHKSETELRTTYDLTPMGLFTLDSEGR 437

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                P +  +LGL   S     R+W  +         R      +  R G    E    
Sbjct: 438 FTRANPALLAMLGLDRDSY--RSRHWTDFFDEGSWIRLRD-----LALRGGESAIEI-NG 489

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
           + D         +R + + N     Y G   ++TE+ +++  +   A  D+LTG  NR+ 
Sbjct: 490 SPDAGTARRRYSLRAIFSEN----AYEGSLEEVTERAEAVARLHFLAEHDSLTGALNRRG 545

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               L  +     T      +V  +D+D++K IND+ G A GD+VL  L  R+   L+  
Sbjct: 546 IERVLEGL-----TSTRPSWSVAYVDLDRFKLINDMFGHAAGDEVLRQLVVRMTASLEGR 600

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTS 665
             + R+ G+ F  +   E +  + A     +  +++  P  +  R   V ASIG      
Sbjct: 601 GTIGRIGGDEFVCVFA-EMDVDEAAALCRRLEHAVSALPYPIGSRAFRVRASIGVVECLP 659

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCLAVENSELY 721
           + ++  +++ +A+ A   +K  G   V  +R        R+  + +   L        L 
Sbjct: 660 N-MSVQDIVAHADQACRESKRDGNGKVVVYRSDAFDLERRTRDIALIGTLSEDAIPEGLV 718

Query: 722 LVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           L   PI+ + +  E +  E L++        +S+ +F+   E    I AI+L++L  +  
Sbjct: 719 LAMQPIMSVTNAAESLDFEVLLRLRRDDGTILSAVDFIDAFERSGTIGAIDLWVLSMVLE 778

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I   +        FI +N++   L D  +   +   +         + L  +E+V + +
Sbjct: 779 WIERNQAALTKTR-FICVNLSGASLNDERIVAELFRRLEAHASIVHYLCLEITETVALHD 837

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            + S+  + R   +GI + LDDFG   +   YL  +  D +K +G  +         IAI
Sbjct: 838 LKTSQHFIARAHDMGIRIALDDFGAGHTSFKYLKALSADALKIDGEFVKTMCEHPADIAI 897

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + S++ +A+N+    IA+ +      + L  +G DY+Q   V  P+    IL 
Sbjct: 898 VESMVNLARNLGMRTIAEWVEDLRTFEALRAIGVDYVQGYAVGRPVMPERILA 950


>gi|331019676|gb|EGH99732.1| GGDEF protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 512

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 207/426 (48%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L      ++ +  V +ID+DK+K IND  G AVGD  
Sbjct: 82  LARHDPLSGLLNRRVFHEQLVARL----QQESTQTAVFLIDLDKFKLINDTHGHAVGDAA 137

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + +        +ARL G+ FG+ +  + +  ++A  A  +   IA+  +    
Sbjct: 138 ICAVAESLRDATTGWQASVARLGGDEFGLAVSGDFSQFELAALAENVLAKIALS-SAGLP 196

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            +T++A++G A        +  +L+ A+ AMY  K+ G      + VS  R  R+     
Sbjct: 197 RVTLSATLGVAISPLDGSDAEVLLQRADSAMYRGKNGGRATFHFYEVSFEREQRLQEVFA 256

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 257 QELRHAIEEKHIQPFYQPIVSLPEQRLAGFELLARWLHPERGIILPMDFIPVAEQLGLIK 316

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  E ++ L  +  +  SR+
Sbjct: 317 QLTESLLLQAFDHARDWPS-----DFTLSINVTSLMIESLDFPEWLEQLAREGRFPLSRL 371

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L  LR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 372 EVEVTENTLVANVDSARLNLECLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 431

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S   +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 432 DTSLGNQNEMVKAILALGKSLRMKITAEGVEHEDLAHWLAAHECDFAQGYLFGRPLPLAQ 491

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 492 VTALLA 497


>gi|260771115|ref|ZP_05880042.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio furnissii CIP 102972]
 gi|260613712|gb|EEX38904.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio furnissii CIP 102972]
          Length = 782

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 198/444 (44%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR+ F  +    L  +  + ++   V+ ID+D +K +
Sbjct: 326 TELDSTYQRTKTLAEYDHLTKLANRRQFQVQAEKTLLETPRNSHIW--VLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILI-SENNSLKIA 631
           ND  G  +GD +LVS    +  L +          + ARLSG+ F I+L           
Sbjct: 384 NDKYGHQIGDSLLVSFADHVRRLCEEFNQQHYTYSLAARLSGDEFAIVLCAPSRKVDCAT 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   +    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 QFAQRLLDPMQKQDNSPLGHFPITASIGIATYPEDGQQIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +        +    I+  L L   + E  LVY P       ++ G E L++W+  + 
Sbjct: 504 VAYYSQQLDEIVQRRNTIERALRLGHFDQEFSLVYQPYFTCSGHQVAGFEVLLRWESEQL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G++S  EF+ IAE+  +   I+ ++++    ++ + R+Q    PI I IN++S +L    
Sbjct: 564 GDVSPDEFIPIAEQTGLFGQIDRWVIQSAFAELNTLREQF-TQPIQISINLSSAELDSQH 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +    P  +    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHQHAQQHQVVPHWVDFEITETFAAD--SKSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+ + +       +  +++ +I +  +    + A+ I  E   + L 
Sbjct: 681 IAQLVQYPVQKIKFDRAFLDTLIATNKQKVIKPLIDLCHSQHMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CDY+Q      P+  + +   
Sbjct: 741 NYRCDYMQGYFFGKPMSLSEVCAW 764


>gi|330817070|ref|YP_004360775.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
 gi|327369463|gb|AEA60819.1| diguanylate cyclase/phosphodiesterase [Burkholderia gladioli BSR3]
          Length = 635

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 92/430 (21%), Positives = 191/430 (44%), Gaps = 8/430 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D+ T +PNR+ F +RL   +  +   D  R ++++++I     I + LG+  
Sbjct: 208 ELWYAANYDDATRLPNRKLFAERLDLRIARARATDG-RFSIVLLEIGGLSTIRNALGLPG 266

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            +  +     R+   +     +A +   +F ++   +     +      +      PI  
Sbjct: 267 VELAVRVTGERLRTKVPHLYGVASMGDGKFALLC--DEAEPVVRRLVETIVAVAGEPIEF 324

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRV 705
               + V A+ G A++      +  +++ A +A+  A   G      F        + R 
Sbjct: 325 AGAALNVIANAGTAAYPEQGEDTDTLIRRANVALSAALEAGDGIAVPFSSALELRATRRF 384

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  L   ++  + +L Y P + L    I  +EAL++W HP+ G +S +EF+ IAEE  
Sbjct: 385 ELEAALARGIDRQQFWLAYQPQVTLETGRIAQVEALLRWRHPRSGEVSPNEFIPIAEESG 444

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  + +    R+I      +   P  + +N++ +      L   ++  +  +  +P
Sbjct: 445 LIDRIGEWAIRTACREISRLHRDSEDAP-RVCVNVSPQQFRRGNLLAIIEQALDDSGLAP 503

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            ++++  +E V+ G+ E +   +  +R++G+ + +DDFGT  S LSYL   P + VK + 
Sbjct: 504 HQLEIEITEGVLFGDTEAALDTVSSIRQLGVEIAVDDFGTGYSSLSYLTRFPVNRVKIDR 563

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +       +   ++ +II MA  ++  + A+ +       +L  +GCD  Q    A P
Sbjct: 564 AFVAPLPSDARSAELVAAIIAMAHALKMRVTAEGVETIEQANQLLALGCDEAQGFWYARP 623

Query: 944 LGFNSILKLL 953
             F S+  L+
Sbjct: 624 HTFGSLRTLI 633


>gi|283785265|ref|YP_003365130.1| heme-regulated cyclic AMP phosphodiesterase (direct oxygen sensor
           protein) [Citrobacter rodentium ICC168]
 gi|282948719|emb|CBG88311.1| heme-regulated cyclic AMP phosphodiesterase (direct oxygen sensor
           protein) [Citrobacter rodentium ICC168]
          Length = 801

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 219/487 (44%), Gaps = 22/487 (4%)

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--------EQKKSLEGILCNAFQD 536
           +R  D       + I+ +     +   +I    DI+        EQ+KS + I      D
Sbjct: 323 LRQRDGSAA-GTLTIKTVKGK--ETSAFIERVADISQHLAELALEQEKSRQQIEHLMQFD 379

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+PNR      L   +     +    P V +I +D +++  D LG A+ D VL+   
Sbjct: 380 PLTGLPNRNHLHAWLDESVA---ANPQHPPVVFLIAVDHFQEAIDTLGYALADQVLLQAI 436

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            +I + L+    L+R+   +  +++  ++    I  FA  +       I   ++   +T 
Sbjct: 437 NKIRDRLRPDQYLSRIESTQ-LVLVSHDSEMSNITQFADELIAIGNEAILFDDKPFQLTF 495

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLA 714
           SIG +    +      +L  A  AM + +  GGN  + F     R   +R+ +   L  A
Sbjct: 496 SIGISY--EAGKDRDYLLSTAHNAMDYIRKAGGNGWQFFNPQMNRAVKERLQLGAALKSA 553

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           + +++L LVY P I     E+ G EAL +W  P  G++  + F+ +AEE   I+ I  ++
Sbjct: 554 IASNQLRLVYQPQIFADTGELYGFEALARWHDPVHGHVPPNLFIPLAEETGEIENIGHWV 613

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +    R +  WR  +   P  + +N+++     N+L + +   +++      ++ +  +E
Sbjct: 614 VREACRQLAEWRAMSLNIPA-LSVNLSALHFRSNQLPDQVSGAMAEFAIPGEQLTVEITE 672

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S++M   +     +G LR +G+ L++DDFGT  S LS L  +P   +K + + +     +
Sbjct: 673 SMMMEQDKEIFTRIGILRNMGVGLSVDDFGTGFSGLSRLVSLPVTELKIDKTFVDRCQTE 732

Query: 895 R--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   ++L +II + + +   +IA+ +  +   + L    C  IQ  + A P+  N I   
Sbjct: 733 KRIQSLLEAIISIGQRLNLVVIAEGVETKAQFEMLRAARCPVIQGYYFARPIAANEIPAW 792

Query: 953 LKERFPL 959
           +    P+
Sbjct: 793 MNSSLPM 799



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 4/141 (2%)

Query: 389 HVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    ++    LAV      V   D  R  V        + G       
Sbjct: 118 YLAFVRDASVEMEQKEQKRLLVLAVDHLDRPVIVLDHERRIVQCNRAFTEMFGYGIQDAA 177

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   + L  I      + R  L   + ++  R Q EF       +  W+   I P+ +  
Sbjct: 178 GQQPDTLLTI-PETPADNRLRLKQLL-WKTERDQDEFLALTRAGEAIWIKASISPVYDPR 235

Query: 507 GDILRYIGIANDITEQKKSLE 527
             +   +   +DITE+++  +
Sbjct: 236 TRLPNLVMTFSDITEERQIRQ 256



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   +    I  + R      + 
Sbjct: 17  ALEQNMMGAVLINDNDEVLFFNPAAEKLWGYNRDEVLGQSIS--KLIPHDLRAAHPDYIR 74

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  ++   G I  Y+    D + + +  
Sbjct: 75  HNREGGKPRVEGMSRELQLERKDGSKIWTRFALSKVT-VEGKI-FYLAFVRDASVEMEQK 132

Query: 527 EGILCN 532
           E     
Sbjct: 133 EQKRLL 138


>gi|260893471|ref|YP_003239568.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex
           degensii KC4]
 gi|260865612|gb|ACX52718.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Ammonifex
           degensii KC4]
          Length = 673

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 203/436 (46%), Gaps = 17/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +      D LTG+P+R    D L   +  +     +   ++VIDID ++ +ND  
Sbjct: 232 QVQEKLHHLVHHDPLTGLPHRFYLEDHLKQAVLKARR--GISSALLVIDIDNFQLVNDNW 289

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L +  R + E ++  DI+AR++G++F +++                R+    
Sbjct: 290 GYKAGDRLLQAFARFLQENIREEDIIARVAGDKFMVLMEDVFEEEACKLAEELRRRVEEG 349

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L  +   +T S G +        +  ++  A+LA+  AK  G N V  FR       
Sbjct: 350 SFELDGQRCRITVSAGISMVKGD-EAAETVMSQADLALRRAKEEGRNRVVLFRPEEELLA 408

Query: 704 RVMIKED----LCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNISSSEF 757
           R+  +++    L  A+     L L   P++RL D ++V  EAL++          S ++F
Sbjct: 409 RLKGEQEVLNLLKEALATGRGLLLFLQPVVRLSDLQVVHYEALLRLRECNMDRYCSPAQF 468

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   ++  ++ +++E     + +       P + + +N++   + D+ L E +QA 
Sbjct: 469 IPLAERFGLMPRLDRWVIEAALDILRA------HPKLKLFVNLSGLSVGDDSLLEYLQAK 522

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PSR+    +E+  + N  R+   LGRL+++G  L LDDFG+  S  SYL  +P
Sbjct: 523 LKEKEVDPSRLGFEVTETAAIRNLLRAERWLGRLKQLGCELALDDFGSGFSTFSYLRSLP 582

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + S + G T  R   A++ ++  +A  +    +A+ I  E  ++ L  +G D+ 
Sbjct: 583 VNYLKIDLSFIRGLTSDRMHRALVEAMNTVAHTLGKLTVAEGIENEETLRILQELGTDFG 642

Query: 936 QDSHVASPLGFNSILK 951
           Q  +   P    +I+ 
Sbjct: 643 QGYYFGRPEPVEAIIA 658


>gi|320179729|gb|EFW54677.1| Heme-regulated cyclic AMP phosphodiesterase [Shigella boydii ATCC
           9905]
          Length = 807

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 230/526 (43%), Gaps = 38/526 (7%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      ++  +                 
Sbjct: 306 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIETSSGA-------------- 350

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 351 --ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 408

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R  E LK    L R+ G +F
Sbjct: 409 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQF 463

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 464 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVSKNRDYLLSTA 520

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AM + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 521 HNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 580

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 581 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIERWVIAEACRQLAEWRSQNIHIPA- 639

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 640 LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 699

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTI 913
           + L++DDFGT  S LS L  +P   +K + S +     ++   A+L +I  + +++  T+
Sbjct: 700 VGLSVDDFGTDFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTV 759

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           +A+ +  +   + L ++ C  IQ    + PL    I   +    PL
Sbjct: 760 VAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 805



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEAS 185

Query: 447 G-PIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           G      L       ++R   + +L      +  R Q EF +     +  W+   I P+ 
Sbjct: 186 GIQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKASISPVY 240

Query: 504 NSNGDILRYIGIANDITEQKKSLE 527
           +    +   +   +DITE+++  +
Sbjct: 241 DVLAHLQNLVMTFSDITEERQLRQ 264



 Score = 52.3 bits (124), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|310827334|ref|YP_003959691.1| diguanylate cyclase/phosphodiesterase [Eubacterium limosum KIST612]
 gi|308739068|gb|ADO36728.1| diguanylate cyclase/phosphodiesterase [Eubacterium limosum KIST612]
          Length = 1404

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/427 (22%), Positives = 184/427 (43%), Gaps = 16/427 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LTG+ N+ +F   +  IL           +++  DI+++K IND+ G   GD +L  
Sbjct: 21  YDSLTGLLNKDTFYKNVHEIL---MGFPEKAYSIICFDIERFKVINDLFGAEEGDRLLQY 77

Query: 595 LTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +   +          A R+  + F I+L            A  +  S+     L    + 
Sbjct: 78  IGDELNTWAAEKAGCAGRIVADVFAILLPDM--EGDADSTAQRLTDSLEQ-YPLD---ME 131

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
           ++ + G        +  S M   A LA+   K         +         +   I  ++
Sbjct: 132 ISIAAGLYHIDDVNLPVSRMCDRAILALNSVKGNYLKRAAVYDNHLRSSLIEEQEIVNEM 191

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   +  +   P   +   +IVG EAL++W HP+ G IS + F+ + E    I  ++
Sbjct: 192 AHALAERQFQVYIQPKCDMRTNKIVGCEALVRWIHPEKGIISPAAFIPVFERNGFILKLD 251

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E + R + +W D     PI   +N++  +L    L + +  ++ K    P  ++L 
Sbjct: 252 AYVWEEVCRLMRNWID-NGHQPIPTSVNVSRVNLYHQGLSDLLANMVKKYNLPPYLLELE 310

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES    N ++   L+ RLR +G ++ +DDFG+  S L+ L  I  D +K +   ++  
Sbjct: 311 ITESAYTKNLDQLLSLVNRLRDLGFTILMDDFGSGYSSLNILKDINVDVLKIDMRFLSDM 370

Query: 892 TE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   IL S++ M K ++ ++IA+ +  +  +  L  +GC Y Q  +   P+  + 
Sbjct: 371 EHLKGRAGNILESVVRMTKWLDLSVIAEGVETKEQVDFLLDIGCHYAQGYYYYKPMPTDE 430

Query: 949 ILKLLKE 955
              LL +
Sbjct: 431 FEALLLQ 437



 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 137/349 (39%), Gaps = 26/349 (7%)

Query: 406  RQSLAVLGSGDIVWDWDIVRD----RVTTTPDIATILGLA--SGSMHGPIRNWLPYIHIN 459
            R   A+      +W++DI             + +  L                  Y+   
Sbjct: 994  RFKAAIEHLDISIWEYDIKTKCLIKETKWNKEGSRRLVYPNMPDESVTKG-----YVSPE 1048

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                +  + +  +   + +   E +++  D ++ W  I    + + +G  ++ IG + +I
Sbjct: 1049 SLGEYLRLYED-ISGGKLKTSAEVQIQEPDGKYCWYRITYTVVLDEDGQPMKAIGTSENI 1107

Query: 520  TEQKKSLEGILCN---AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             E+K+  + I      A +D LTG+ NR++  + +   L++S  D  +   +++ DID +
Sbjct: 1108 EEEKRKQKRIDKLLLKAQKDFLTGLYNRETIEEMVKQSLEISVLDKGVS-AILIADIDNF 1166

Query: 577  KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            K+IND  G   GD VL  + R I E+     +  RL G+ F + +  E+    I      
Sbjct: 1167 KQINDFYGHTEGDHVLKEIGRIIPEVFGDKALTGRLGGDEFLVFVTGEDYESDICSLTQK 1226

Query: 637  MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
                ++    L  ++  +T S+G A    +      + +NA+ A+Y AK RG N    + 
Sbjct: 1227 FCDRLS---ELEVQDKKITVSVGIAFVEEAIRDFKTLYQNADAALYVAKCRGKNTYAVYH 1283

Query: 697  --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                  +     +   +       EL    + I     + I    AL++
Sbjct: 1284 ALQFQKQHAYFNMDTAIL-----DELDSFVYIINAETYDIIYCNTALLR 1327



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 61/152 (40%), Gaps = 4/152 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           + +  I  V       + +    +R  +A+  + + ++D+DI +  +  +   A   GL 
Sbjct: 573 LFYASIIDVTKQKQSEEALRLSEQRFRIAMEATNNTIFDFDIEKRTIDYSDYFAKKYGLK 632

Query: 442 SGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              +     + +    IH + +  F  +          +   E RV+  D+ + W  I +
Sbjct: 633 PH-LVNVPNSLVDEGVIHPDSKVCFLEMYRKIFKG-APKASCEVRVKLYDSSYLWNRITL 690

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             + +S    +R +G+  DI+ +K+    IL 
Sbjct: 691 TNIYDSTQKPVRAVGLVEDISREKEMENQILQ 722



 Score = 71.5 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 429 TTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
               ++  I+G  S    + G        IH +D +     +              +R  
Sbjct: 763 FINKEMLEIMGYDSYDDFIEGTGGFVNNTIHPDDHEYV-AQIVGPKDKEGDEYTVRYRTL 821

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             D  + W+I R R +   +G +   +    DITEQ +      
Sbjct: 822 RKDGSYFWVIDRGRVVRAEDGRLA-IVSACIDITEQVELQNEFE 864



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +          G  + ++    R+ L  +   D+      L          +  +FR +
Sbjct: 490 VLRVNEGYYQATGCNAEALKTNGRHILDRVPDEDKPIVLDALQRAPKTPEKGIDIQFRRK 549

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             + ++ WM +R+  +++     L Y  I  D+T+QK+S E
Sbjct: 550 RLNGEYMWMYMRLFFLADRGDRQLFYASII-DVTKQKQSEE 589



 Score = 42.6 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 429 TTTPDIATILGLASGSMHG--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
             +  +A +LG             + L  I+  DR  +   +      R   +  +FR  
Sbjct: 888 YMSFGLAKVLGYEEKEYQRLLTCEDGLKLIYAKDRAYYFNAVYKSAAERL-PINIDFRSV 946

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                F W+         ++   + Y GI  DI
Sbjct: 947 NRGGGFGWINFSAE-FYGTDEGCMVYHGIFTDI 978


>gi|320334467|ref|YP_004171178.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319755756|gb|ADV67513.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 795

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 208/441 (47%), Gaps = 13/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++ L  +   A  D LTG+PNR    DR  T ++ ++     R T+ VID++K+K IN
Sbjct: 361 ETRERLVELERQALYDALTGLPNRLLLADRYRTAVEHASAHGE-RLTLGVIDLNKFKHIN 419

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +GD +L+ + RR+  ++   D +AR  G+ F +IL    +   + + A  +  +
Sbjct: 420 DTLGHHIGDLLLIEVARRLEPVIGPRDTVARTGGDEFVLILRDTPDDAAVLNAARRVVAA 479

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                 L   ++ V  S+G A +     T  ++ ++A+ AMY+AK RG            
Sbjct: 480 FDPTFTLETHDLNVRPSLGVAVYPDDARTWEDLFEHADKAMYNAKTRGSGFERHAAGDEG 539

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + ++  +  A+   +  L+Y P+  L D  + G EAL++W+HP +G++    F+ +
Sbjct: 540 GFAPITLEGAVHHALALGQFDLMYQPLT-LPDGRVRGAEALLRWEHPHFGSVPPGVFLPL 598

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +   I  ++L+   R    W          + +N++ +     +L   +Q  +  
Sbjct: 599 AERTGLSVPIGAWVLQEACRVARHW------DGRVLSVNLSPRQFTHPDLTTFVQDALDA 652

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +  SP  ++L  SE ++   P+R+R  L  LR +G+ + +D+FG   +  + L +   D 
Sbjct: 653 SGLSPHLLELEVSEEMLQRAPDRARAALTALRALGVRIVIDNFGAGFTSFAALKHAGVDG 712

Query: 881 VKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           VK + +L+          +  A+L  ++ +A+ I   +IAK +        L R+G + +
Sbjct: 713 VKLDPALVRDLKGDGTHGRDEAMLEGVVRLAQAIHLDVIAKGVETPEQQAFLARLGVNAV 772

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A P G  +  + L   
Sbjct: 773 QGFLFAHPQGAEAFARHLAAH 793


>gi|16329353|ref|NP_440081.1| hypothetical protein slr1102 [Synechocystis sp. PCC 6803]
 gi|1651834|dbj|BAA16761.1| slr1102 [Synechocystis sp. PCC 6803]
          Length = 853

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/662 (18%), Positives = 256/662 (38%), Gaps = 19/662 (2%)

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
           P   +  +   +  +             K     ++ I A   +      L +       
Sbjct: 201 PASLSENSTQLIVELTTAGQVIYANGATKALFPELMAIQAQHPLIQGLSNLSLTREGLQL 260

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQ----HVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
              I          I +    + +Q     V       QG+     R       S     
Sbjct: 261 ERDIAIGQQIFHQRIFLGPDRSRLQCYSEDVTEYRKMEQGLNDLHHRLQAYREYSATGFL 320

Query: 420 DWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
             D      V        +LG     +          I    R     +L +        
Sbjct: 321 LVDARTKTVVEANSAFCQLLGYEESEVLD--FTLYQLIAAE-RPVIEELLINLETQNYLS 377

Query: 479 L-QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
           + + E+R R  + Q   +   +  +   + ++  ++        ++   E +   A  D 
Sbjct: 378 VPELEYRNR--EGQTVQVKGEVYRLPWEDREVYCFV--MRTPRGRQGYSETLANQALYDP 433

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           ++ +PNR +    L+  +D +A   +L   VM I ++   +IN   G   GD+V ++   
Sbjct: 434 ISKLPNRVNLQKELSLAIDAAAHHQHL-MGVMFIHLEILNRINQAYGFGFGDEVFMAFHG 492

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I + ++  D + +   N   IIL    +       A  +   +  PI + ERE     +
Sbjct: 493 AISDCMRSGDTVGQWDSNTLVIILAKIKSPQDSIRLAERILDRLKNPITVREREFIFNIN 552

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
           IG +++ +    + ++L  A  A+   +  G NH + +          +  ++  L  A+
Sbjct: 553 IGISAYPNDGNRAEDLLSRANAALQKLRQTGFNHYQCYDPKFSTAALHQARLENLLQQAI 612

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              +L L Y P I L   EI  +EAL++W+HP+ G I+  + + IA    +I  ++ ++ 
Sbjct: 613 AKRQLTLQYQPQIHLQSGEITAIEALLRWEHPEVGEIAPGKIIPIAARSNLIFELSDWIF 672

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               +  + W+     PP  I IN+++++    +L   +   + +T   P  ++L  +E+
Sbjct: 673 RTACQQNLEWQKD-GSPPRAIAINLSAREFYRQDLVMMVGKTLEETGLDPQWLELEITEN 731

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            +   P ++  +L  L+  G+ + LDDFG     + ++   PF T+K +   M     T 
Sbjct: 732 TLRQQPAKALAILQDLKTFGVRIALDDFGLGQMGIGFVTQFPFTTIKIHQGFMARLRGTP 791

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +AIL+SI  +++  +  ++A+ I  +  +  + ++ C  +Q   ++ PL    + + L
Sbjct: 792 QEMAILQSIFALSQGFQYRLVAEGIETDAQLSLIKQLQCQEVQGFLLSRPLRKREMGQFL 851

Query: 954 KE 955
           ++
Sbjct: 852 QK 853


>gi|300113552|ref|YP_003760127.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539489|gb|ADJ27806.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1192

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 186/431 (43%), Gaps = 10/431 (2%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +K    I   A  D LTG+ NR+ F  R    L  +   +     ++ +D+D++K IN 
Sbjct: 758  LQKFHSHIAYEATHDPLTGLVNRKEFEQRANRALAKAK-HEVQSYVLLYLDLDQFKIINS 816

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              G   GD +L  +   + E L    ILARL  N+FG++L                    
Sbjct: 817  TCGYEAGDALLKEIANLLTECLPDEGILARLGDNQFGVLLNQCPQDEGYEIAERQRIAID 876

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--- 698
            +  +    + ++V  SIG  S +     ++ +L+ AE A   AK  GGN +++       
Sbjct: 877  SHRLVWNNKRLSVAVSIGLVSISEQNCDAAVLLQRAEAACMEAKEAGGNRIQACEFDDEE 936

Query: 699  -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWGNISSS 755
               R   V     +   +E+  L L    I  +      +   E L++        I++ 
Sbjct: 937  FRRRHGMVEWVARIDEVLEDGRLQLWCQRITPIAGCPEMVPHYEILLRLRDQDGRWIAAG 996

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            E + +AE    + AI+ ++++   R +   +++       + IN++ + L D  L   ++
Sbjct: 997  ELIQMAEFYHRMMAIDQWVIQSAFRWMADHKERLEQLGG-MAINLSGQSLNDRRLVTFIK 1055

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               ++T   P R+    +E+  + N   +  L+  ++ +G   +LDDFG+  S  SYL  
Sbjct: 1056 REFARTGVPPQRVCFEITETAGVANLSHTAQLIRAVKDLGCHFSLDDFGSGLSSYSYLKN 1115

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K +G+ +     +    A+++SI  +   +   +IA+ +  +  + +L  +G D
Sbjct: 1116 LPVDYLKIDGAFVKDIATSSSDYAVVKSINEIGHFMGKKVIAEFVESKAILAKLQEIGVD 1175

Query: 934  YIQDSHVASPL 944
            + Q   +  P 
Sbjct: 1176 FAQGYGIEPPQ 1186


>gi|163800654|ref|ZP_02194555.1| GGDEF family protein [Vibrio sp. AND4]
 gi|159176097|gb|EDP60891.1| GGDEF family protein [Vibrio sp. AND4]
          Length = 636

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 102/442 (23%), Positives = 184/442 (41%), Gaps = 7/442 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K + + +      D  TG  NR +  + L   L  S TD     +V+ I     + 
Sbjct: 189 IDRRKAAEKQVSYQQTHDQGTGFLNRSALEEHLDEALA-SITDTQQDLSVLNIGFSNARS 247

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           I    G    D+VL     R+G       +  R S N   I++I E+   ++      + 
Sbjct: 248 IQTKFGFEAFDEVLKEFRLRLGHSESSYFVTGRPSSNDVVILVIGEDIEAQVQHLLDDIN 307

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
                   +   E+ +   +G          + ++L+NA  AM   K  G          
Sbjct: 308 HVGLGNFYIENNEVHLHTYVGVVQAHK-ASYAKQLLQNACHAMLLCKESGESYRYFCESH 366

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +   +    ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+   
Sbjct: 367 TQKLNHHNQLESYLLQAVRNDDLMLYFQPKVLPHTHKWIGAEALLRWRHPVLGDVSNEAL 426

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  F+L         W +        I +N++   L +    E ++ L
Sbjct: 427 IHMAEQNGLIFEVGAFVLRTAIDKAKQWSELV--DNFKIAVNVSPIQLQNVNFAEQIEHL 484

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +      P  ++L  +ES ++ +   +R  L ++  +G++L+LDDFGT  +  SYL   P
Sbjct: 485 LHTFHLPPHFLELEVTESALIADEVVARNTLNKIHNLGVTLSLDDFGTGYASFSYLKKYP 544

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +      E   AI+ SI+ +AK ++  I+ + I      + L   GCD  
Sbjct: 545 FDAIKIDKSFVQHMDKSEDDKAIICSIMHIAKKLDLQIVVEGIESVQQEQFLIGEGCDIG 604

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q      P+  N   + L  + 
Sbjct: 605 QGFLYGKPMPCNEFEQSLFNQN 626


>gi|71725165|ref|YP_272209.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71725247|ref|YP_272152.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71558755|gb|AAZ37965.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558837|gb|AAZ38047.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 649

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 214/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNANLLLANRDSLTGLPNRRHFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +L+ +  R+   +     ++RL G+ F +++  + +   +  F   +   I  
Sbjct: 271 GHSVGDRLLMLVAERLISAVSDTVQVSRLGGDEFALLVKGDISDEALLMFGKHICTLIHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 GFELSEIPIQIGATLGFATFPATADNAAQLYEYADYALYQGKNHNPGSTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 NADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L +  +  +SW       PI +  N+++ D    E  + +  +I  +
Sbjct: 451 ERIGMINELTAPLLTQALQRALSWPS-----PIKLSFNLSAHDCATWESVKKIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIGQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K   S +T          I++S++ ++ ++    + + +  + ++  LT +GC  +Q + 
Sbjct: 566 KIARSFVTSVHDNPTSYKIVKSLVALSLDMSLDCVIEGVETQDELNMLTSLGCTMVQGNF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPITFAETLVWIE 640


>gi|225849055|ref|YP_002729219.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644728|gb|ACN99778.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 653

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 110/578 (19%), Positives = 239/578 (41%), Gaps = 50/578 (8%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVL---GSGDIVWDWDIVRDRVTTTP 432
           +  +++    + H+       Q +    E R  L         D V   D     +    
Sbjct: 110 IEYLIVNARDLTHLDNLNKQLQTLKEQLEKRYELIYSIFLNISDAVAILDKDGYYLEQNK 169

Query: 433 DIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
               ++G +   + G   N   ++  +D +     + S     +G    E +++    + 
Sbjct: 170 SHENLIGYSIEELIGKTPNI--HMKKDDLEKIFQEIKS-----KGSYLGEIQIKTKSGEH 222

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             + +    + + NG I   IGI  D + +K+ +       + D LT +PNR   ++ L 
Sbjct: 223 KDVELFAFALYDENGKISNIIGIKKDRSLEKELI-------YLDKLTNLPNRIKLMEDLK 275

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LAR 611
            +             V++++ID +K+INDV GI +GD +L +L  R+ ++ K  +  + +
Sbjct: 276 NL---------KEYKVIIVNIDSFKEINDVYGIKIGDMLLNALGNRLKDIGKKHNFNVYK 326

Query: 612 LSGNRFGIILISENNSLKIADFAIAMR-KSIAMPINLLEREITVTASIGFASWTSSKITS 670
           LSG+ F I++        +      +  +  + P  +    I +  +IG A  +  +  +
Sbjct: 327 LSGDEFLILIDRFYPKTFLESLVNEIFYEVQSKPFEIEGLSIPIDITIGAAEGSKDETKA 386

Query: 671 SEMLKNAELAMYHAKHRGGNHVESF---RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
              L+ A++A+ +AK    N V      ++     + +    +L  A++     + Y PI
Sbjct: 387 ---LEKADMALKYAKQSKKNFVCYDETLKIQEIYQNNISWVRNLKKAIDEDGFLVYYQPI 443

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +     +I   E+L++         S   F+ IA++  +  AI   + +   +    +  
Sbjct: 444 LNNQTNKIEKYESLVRVKI-DNTVYSPFYFLEIAKKSKLYLAITKKVFKEAIKHAKDYE- 501

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   I IN++  D+L+ E+   +   + ++     +I     ES  + N E     
Sbjct: 502 --------ISINLSVLDILNEEISTEIIKTLKESDL---KITFEILESEGIENYEDVSGF 550

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  ++  G  + +DDFG+  S  +Y+  +  D +K + SL+    +      I+ +I+ +
Sbjct: 551 IKNVKSFGAKVAIDDFGSGYSNFAYILKLDVDYIKIDASLIKNIHQDINSQIIVENIVNL 610

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           AK +    IA+ ++ +   +++  +G DY Q  +++ P
Sbjct: 611 AKKLGIKTIAEFVHCKEVFEKVKELGIDYSQGYYISEP 648



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 5/138 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
            F +    + E     +  S DI++  D+    +      + ILG +   + G       
Sbjct: 1   MFLKETSQNFELLRRIIDKSPDIIFTIDLDGKILYVNDTFSEILGYSKEEVIGKH----- 55

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            + I   ++        V      L  E   R  D     ++  +  + N  GDI   I 
Sbjct: 56  IMEIATEESIYNACMISVKSTGKCLDQETIFRKKDGTLVHVVKNVNALYNEKGDIEYLIV 115

Query: 515 IANDITEQKKSLEGILCN 532
            A D+T      + +   
Sbjct: 116 NARDLTHLDNLNKQLQTL 133


>gi|323694292|ref|ZP_08108466.1| hypothetical protein HMPREF9475_03330 [Clostridium symbiosum
           WAL-14673]
 gi|323501638|gb|EGB17526.1| hypothetical protein HMPREF9475_03330 [Clostridium symbiosum
           WAL-14673]
          Length = 980

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 190/443 (42%), Gaps = 15/443 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  + K  +     A  D LTG+ NR++F +R    L       + R  ++  + + +K 
Sbjct: 542 IMMELKEKKAYQLMAETDELTGMYNRKAFYER---ALRYMDERPDRRFQIIFFNAENFKV 598

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +ND+ G+  GD +L+ L   I E       + +R  G+ F +   +E +     +    +
Sbjct: 599 VNDLFGVQAGDGILIFLAGIIKEWTAEKGGVCSRFEGDHFVVC--TEEDDEYAKEITDKI 656

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R  +     +    + V  S G         + + M   A +A+   K     HV  +  
Sbjct: 657 RSELKT-YPID---MNVEVSCGIYHVHGRDKSINIMCDRAHIAVNSIKGNYARHVAVYDD 712

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S         +I  ++  A+E  + ++   P   +  E+I+G EAL++W HP+ G +   
Sbjct: 713 SHREAIIHSQLIVSEMNRAMEQRQFHVYLQPKFNMETEKIIGAEALVRWVHPERGILPPG 772

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ I E    I  ++L+M E   + +  W D     P+ + +N++     + +LCE + 
Sbjct: 773 DFIPIFEHNGFIGQLDLYMFEETCKVLRRWLD-GGRQPVPVSVNLSRVGFYNPKLCEHLY 831

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               K       ++L  +E+    +       + +LR++G  + +DDFG+  S L+ L  
Sbjct: 832 KTAQKYRLPLDLLELEVTETAYASDSRTIHSHIRQLRRMGFKILMDDFGSGYSSLNMLKE 891

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P D +K +   ++      +   IL+ +I M K +   ++A+ +  +  ++ L    C 
Sbjct: 892 APVDQIKLDMRFLSEPDPYGRAETILQMVIAMGKALSIPVLAEGVETKGQVEMLKSYSCC 951

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q  + A PL      +++ ++
Sbjct: 952 LAQGYYYARPLTVEKFEEMMDKQ 974


>gi|326790727|ref|YP_004308548.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
 gi|326541491|gb|ADZ83350.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium lentocellum DSM 5427]
          Length = 567

 Score =  376 bits (966), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/545 (21%), Positives = 251/545 (46%), Gaps = 11/545 (2%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D V   D     +     +          + G        + ++D    + I +      
Sbjct: 25  DWVIIGDKYGKIIYANQTVYLACNSDKDKVLGDDMCMFVGVDLSDDVTLQHIQNFIYNGE 84

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R       R     N+  ++   +  + +  G +  Y+ ++ DIT  ++  E +    + 
Sbjct: 85  RFEF-VTNRFV-KGNKRIYLANTLTTIWDEKG-LEYYVCLSKDITNTEQLKEEVYKANYF 141

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT  PN++ F++     +  S ++ + +  V++IDI    +IN+V G+ +GD ++  +
Sbjct: 142 DPLTHYPNQKVFIESTLKQVKKSKSN-HTQFAVIIIDIKGVGEINNVYGMNIGDRIIKEV 200

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            +RI E L     + + SGN F II    ++  ++A+F   ++ ++  PI +    + V 
Sbjct: 201 GKRIKEHLNNHQEIFKYSGNSFAIIQQEISSEQQVAEFLQLLQVAMEEPIKIHNSSMYVE 260

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLC 712
              G + +T S +   ++++ A++A+  AK   G    +F    +     +    +++L 
Sbjct: 261 FRAGVSLYTDSSLLGYQVIEQAQIALAKAKKELGYTTYTFYTKGIQEEVKNSFFFEKELQ 320

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           LAV+N E  + Y P + L  E +VG+EAL++        +S + F+   E++ +I+ + +
Sbjct: 321 LAVQNDEFIVYYQPFVELASENLVGMEALLRRKKRNGEIVSPASFIGALEKMNLIEKVGM 380

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L+++   +  W ++     + + +N+++    +  L + ++ ++      P  I L  
Sbjct: 381 KVLDKVCHQLKEWIERGYNV-VPVSVNLSALQFKNPHLAKNIKKVLESYGIPPRYIVLEI 439

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E++VM +   ++L++  L+  G ++++DDFGT  + + YL    FD +K + S +    
Sbjct: 440 TETMVMEDIGIAQLIIEELKNYGFAISIDDFGTGYASIGYLKKFMFDHLKIDISFIREIV 499

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +  AI+ +II +AK      IA+ I  E  +  ++ +GC+  Q      P+    I 
Sbjct: 500 ENAEDRAIVEAIIAIAKTFNLHTIAEGIESEEQLYVMSTLGCEMGQGFFWDRPITAQQIE 559

Query: 951 -KLLK 954
            K LK
Sbjct: 560 NKYLK 564


>gi|153838886|ref|ZP_01991553.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149747643|gb|EDM58561.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 622

 Score =  376 bits (966), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 188/443 (42%), Gaps = 7/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K +   +      D  TG  NR +    +   L  S    +    V+ +     
Sbjct: 173 QEIDRRKAAERQVNYQKTHDQGTGFLNRAALEAVVEDTL-QSLEHGHQSLIVINVGFSNA 231

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G    D++L    +R+G       I  R S N   ++L  E+   K+ +    
Sbjct: 232 RSIQTRYGFEAFDEILKEFRKRLGMNDSNYFITGRPSSNDLVLLLWGEDADSKLHNLLDK 291

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           +         + + E+ + + +G      S  ++ ++L+NA  AM   K  G        
Sbjct: 292 ITNISVGNFYINDTEVHLHSYVGVVQAHRS-SSAKQLLQNACYAMLLCKESGEAYSYFCE 350

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +   ++   ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+ 
Sbjct: 351 SHTHELNNHNQLESYLLQAVRNDDLMLYFQPKVNPHTHKWIGAEALLRWRHPVLGDVSNE 410

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +        + +N++   L +    E ++
Sbjct: 411 ALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELF--DNFKVAVNVSPIQLQNVNFAEQVE 468

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L +L K+G++L+LDDFGT  +  SYL  
Sbjct: 469 HLLEAFHLPARFLELEVTESALIADEVVARTTLKKLNKLGVTLSLDDFGTGYASFSYLKK 528

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +     ++   AI+ SII +AK +E  ++ + I      + L   GCD
Sbjct: 529 YPFDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLELQVVIEGIESPQQEQFLIGEGCD 588

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q      P+  N   + L  +
Sbjct: 589 IGQGFLYGKPMPCNEFEQSLFNQ 611


>gi|152966541|ref|YP_001362325.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151361058|gb|ABS04061.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 797

 Score =  376 bits (966), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/447 (23%), Positives = 202/447 (45%), Gaps = 24/447 (5%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LTG+ NR++    L   L           ++M+ID+D +K++ND  G AVGD
Sbjct: 347 RREALTDDLTGLANRRALDRTLDEHLRT-----GRPVSLMLIDLDGFKEVNDRFGHAVGD 401

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L      +  +     + ARL G+ F I+L   +    +A FA+ +  +   P+ +  
Sbjct: 402 ELLRRAGALLQRVSPPQAVSARLGGDEFAIVLPGSSTEEALALFAV-LADATQAPVLIDG 460

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMI 707
           R +   AS+G A  T++  T  ++L++A+ AMY AK  GG  V      +      R  +
Sbjct: 461 RRLLARASVGIA--TAAGETPEQLLRHADAAMYRAKTAGGAGVAVHDEDAALADEQRARL 518

Query: 708 KEDLC---------LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            E+L            ++   + + Y P + +    + G EAL++W HP+ G ++   F+
Sbjct: 519 VEELKVLLHSPDAVDDLDAGAIAVHYQPQLGV-GGAVAGAEALVRWQHPRLGLLTPDRFL 577

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + EE  ++  +   +L   A     W  + +   + + +N+++  L   +L   +  ++
Sbjct: 578 DLVEEYALMPDLTAQVLREAAGQAAQWHRRGHR--LRMSVNLSASCLSHPDLLPLVDGVL 635

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++      + L  +E+ +M +P+ S   L  L   GI +++DD+G+  S L+YL  +P 
Sbjct: 636 AQSGLDSRDLVLEVTETSLMADPQESIARLHDLAGRGIDISIDDYGSGYSSLAYLHDLPA 695

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + SL     +  +   I+   + +A  +   +IA+ +     +  L  +GCD  Q
Sbjct: 696 SELKLDRSLTRQVTTNPRTADIVAGTVALAHRLGLRVIAEGVEDTTMLHALHALGCDETQ 755

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
               A P+        L         +
Sbjct: 756 GYLHARPMTAEGFDDWLATAGGSTTRS 782


>gi|15605631|ref|NP_213006.1| hypothetical protein aq_027 [Aquifex aeolicus VF5]
 gi|2982789|gb|AAC06414.1| hypothetical protein aq_027 [Aquifex aeolicus VF5]
          Length = 592

 Score =  376 bits (966), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/540 (22%), Positives = 241/540 (44%), Gaps = 24/540 (4%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +        + G     +     +   ++  + R   + +L+          +Y  +
Sbjct: 74  GKIIFVNDYTLKLFGYTRHEVMNK--SPFEFLPFHYRKRAQKVLNEAGTCIEKPKEYTLK 131

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           ++    +  ++  R+  +S    +    + +  D+T +    + +   AF D LTG+PNR
Sbjct: 132 LKTKKGEDKYV--RLYIISFKKDEECIVLILFTDVTNEILLRKKVYYLAFFDQLTGLPNR 189

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F+  L   +    T+      V ++++  + +IN + G   GD++L  +  R+  L+K
Sbjct: 190 HLFIMLLQRFIHDEETN---NLHVCMLNLKNFGEINFLFGFDKGDEILKEIANRLRTLVK 246

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
                ARLSG  FGI L ++     +       ++ +          + +    G +S+ 
Sbjct: 247 EGA-AARLSGKAFGIALRNKEREEVVELVEKLSKEKVD--------SVDLNIKAGISSYP 297

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                  E+L+ AELA+  AK+    +             + IKE L  ++E  E  +VY
Sbjct: 298 QDGENPKELLEKAELALLFAKNT--VNFYKKEYEEKLKKELRIKEFLEESIEKKEFGVVY 355

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+ L D   VG EAL++W HP+ G +  S F+ +AE+  ++  IN  ++E+  R++  
Sbjct: 356 QPIVSLKDFRPVGAEALVRWYHPELGEVPPSIFVPVAEKYGLVSQINYIVMEKAFRELSD 415

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +  +      ++ IN+ ++     EL + +     K  +    + L  +E  +M   E++
Sbjct: 416 FVKER---EFYLSINVNAEQFYSVELIQKLIEFEEKFKFPLRNVILELTERALMAKSEKA 472

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
             +L  L+K+G+ + +DDFGT  S + YL     D +K + S +           ++R+I
Sbjct: 473 VEILSELKKLGVKIAIDDFGTGYSSMHYLVEFDVDEIKIDKSFIDKMLENVNAWQVVRNI 532

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK-ERFPLVK 961
           I +  N+    +A+ +  E  I+EL ++ CD  Q  + + PL F  +++ ++ ER  L+K
Sbjct: 533 IELTHNLNALALAEGVENEEQIRELKKLLCDEAQGYYFSPPLPFKKLIEFVENERQNLIK 592



 Score = 41.9 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +Q  +R+R  D  + W+    + + +  G++ R  G   DIT
Sbjct: 1   MQTVYRLRKKDGSYVWIYANAKVV-SKEGNLYRVAGYWVDIT 41


>gi|163850435|ref|YP_001638478.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163662040|gb|ABY29407.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 697

 Score =  376 bits (966), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 205/434 (47%), Gaps = 14/434 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LTG+ NR  F+ R    L            +M++D+D +K +NDV G +
Sbjct: 261 EEMRERATHDGLTGLLNRAGFIQRAEEQLAA-----GASVCLMLLDLDGFKSVNDVYGHS 315

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  + RRI   +      ARL G+ F ++  +       A  A  + +++A P  
Sbjct: 316 TGDRVLAEVARRIRVAVPVDCDAARLGGDEFALVYDTARVIESPAALAERLIRTVAQPFE 375

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
             +    +  SIG     S  +T   +L  A+ A+Y AKH G NH   F    S+    R
Sbjct: 376 SFDTG-RLGMSIGICHRPSDSLT--HLLSCADEALYAAKHSGRNHFHLFDDGLSTRLEMR 432

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              + DL  A+   EL + + PI       +  LEAL++W HP  G +  ++ +  A   
Sbjct: 433 RDCERDLSQALAEGELEVWFQPIFGPDGRSVTNLEALVRWHHPVHGWVPPADLISAAAMA 492

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            + +++  F+LE++   + + R    +  + + +N++ +++    + E +   +      
Sbjct: 493 GLTESLLRFILEQVCAMLCALR-TRGLHDLSVAMNVSPREMAQIAVDEIVLGRLRVLGLP 551

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + +++  +E   + + E  +  L  L + GI + LDDFGT  S L+ +  +  D VK +
Sbjct: 552 ATALEIEITEETAL-DIEAVQGKLLALSRAGIRMALDDFGTGYSSLASVRQLRADRVKID 610

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+TG +E   +  ++++++ + + +   ++A+ I    D+  L  MGC ++Q  H+  
Sbjct: 611 RSLVTGLSEAEDKRGLVQAVLGLGRALGLEVVAEGIETADDLATLQAMGCPFMQGYHLGR 670

Query: 943 PLGFNSILKLLKER 956
           P   + IL+ L  R
Sbjct: 671 PQPRDDILRFLDAR 684


>gi|28900724|ref|NP_800379.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362623|ref|ZP_05775530.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260896453|ref|ZP_05904949.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|260899338|ref|ZP_05907733.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28809170|dbj|BAC62212.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087259|gb|EFO36954.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308108722|gb|EFO46262.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308112780|gb|EFO50320.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 636

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 188/443 (42%), Gaps = 7/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K +   +      D  TG  NR +    +   L  S    +    V+ +     
Sbjct: 187 QEIDRRKAAERQVNYQKTHDQGTGFLNRAALEAVVEDTL-QSLEHGHQSLIVINVGFSNA 245

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G    D++L    +R+G       I  R S N   ++L  E+   K+ +    
Sbjct: 246 RSIQTRYGFEAFDEILKEFRKRLGMNDSNYFITGRPSSNDLVLLLWGEDADSKLHNLLDK 305

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           +         + + E+ + + +G      S  ++ ++L+NA  AM   K  G        
Sbjct: 306 ITNISVGNFYINDTEVHLHSYVGVVQAHRS-SSAKQLLQNACYAMLLCKESGEAYSYFCE 364

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +   ++   ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+ 
Sbjct: 365 SHTHELNNHNQLESYLLQAVRNDDLMLYFQPKVNPHTHKWIGAEALLRWRHPVLGDVSNE 424

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +        + +N++   L +    E ++
Sbjct: 425 ALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELF--DNFKVAVNVSPIQLQNVNFAEQVE 482

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L +L K+G++L+LDDFGT  +  SYL  
Sbjct: 483 HLLEAFHLPARFLELEVTESALIADEVVARTTLKKLNKLGVTLSLDDFGTGYASFSYLKK 542

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +     ++   AI+ SII +AK +E  ++ + I      + L   GCD
Sbjct: 543 YPFDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLELQVVIEGIESPQQEQFLIGEGCD 602

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q      P+  N   + L  +
Sbjct: 603 IGQGFLYGKPMPCNEFEQSLFNQ 625


>gi|326326128|ref|YP_004250938.1| hypothetical protein VIBNI_0224 [Vibrio nigripulchritudo]
 gi|323669180|emb|CBJ93237.1| Protein of unknown function(EAL and GGDEF domains) [Vibrio
           nigripulchritudo]
          Length = 874

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 214/450 (47%), Gaps = 18/450 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +++ ++    +   A +DNLT + NR          L            +M  +I+ +K 
Sbjct: 428 LSKTRQHAHELEKKAIRDNLTSLHNRYFLEKTPPPWLQEKNR----LGVLMRANINNFKA 483

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN V G  VGD++LV + RR+  +     ++ R   + F I+L    + L I +      
Sbjct: 484 INSVYGHRVGDELLVEIARRLRSVFGDESVI-RFGNDEFVILLSG-TDELSINEGRGRFC 541

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
           + +  PI      +TV+A++G + +     +  E+L+ A +A++ AK    G    S  +
Sbjct: 542 EMMRRPITSHNMVLTVSATLGMSRYPGDGESIEELLRKANIALHEAKENRVGGLFFSDEM 601

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 +V+I  +L  AVE  EL +VY P +     E+VG+EAL++W + + GN+S  EF
Sbjct: 602 EKKTKRKVLIGRELEHAVEREELSVVYQPQLDANSGEVVGVEALVRWQNAQLGNVSPVEF 661

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQAN---------MPPIFILINIASKDLLDN 808
           + IAE    I +I  ++L    + +     Q             PI + IN++   LL  
Sbjct: 662 IGIAEANGTIVSIGEYVLHHSMKSMSELWTQLPQSGGGLRLTHRPIRLAINVSVHQLLCT 721

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E +  L  +       + +  +ES+ + N +R+  +L  LR  G++++LDDFGT  S
Sbjct: 722 DFPEQVIRLHRQYQEKGVTLVVEITESLFIDNVDRAVEILTSLRSSGVAVSLDDFGTGYS 781

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS L  +P D +K + S + G    +    ++ SII + KN+  +++A+ +   ++++ 
Sbjct: 782 SLSLLNRLPIDELKIDKSFVKGIATDKGSRTLIGSIIGIGKNLSVSVLAEGVEHAMEVEM 841

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L  +GCD  Q    + PL    +   L E+
Sbjct: 842 LKGLGCDVFQGYFFSRPLTTEQLKCFLYEQ 871


>gi|315179280|gb|ADT86194.1| c-di-GMP phosphodiesterase A-related protein [Vibrio furnissii NCTC
           11218]
          Length = 782

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 198/444 (44%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR+ F  +    L  +  + ++   V+ ID+D +K +
Sbjct: 326 TELDSTYQRTKTLAEYDHLTKLANRRQFQVQAEKTLLETPRNSHIW--VLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIG-------ELLKFPDILARLSGNRFGIILI-SENNSLKIA 631
           ND  G  +GD +LVS    +        +      + ARLSG+ F I+L      +    
Sbjct: 384 NDKYGHQIGDSLLVSFAEHVRCLCEAFNQQHYTYSLAARLSGDEFAIVLCAPSRKADCAT 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   +    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 QFAQRLLDPMQKQDNSPLGHFPITASIGIATYPEDGQQIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +        +    I+  L L   + E  LVY P       ++ G E L++W+  + 
Sbjct: 504 VAYYSQQLDEIVQRRNTIERALRLGHFDQEFSLVYQPYFTCSGHQVAGFEVLLRWESEQL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G++S  EF+ IAE+  +   I+ ++++    ++ + R+Q    PI I IN++S +L    
Sbjct: 564 GDVSPDEFIPIAEQTGLFGQIDRWVIQSAFAELNTLREQF-TQPIQISINLSSAELDSQH 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +    P  +    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHQHAQQHQVVPRWVDFEITETFAAD--SKSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+ + +       +  +++ +I +  +    + A+ I  E   + L 
Sbjct: 681 IAQLVQYPVQKIKFDRAFLDTLIATNKQKVIKPLIDLCHSQHMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CDY+Q      P+  + +   
Sbjct: 741 NYRCDYMQGYFFGKPMSLSEVCAW 764


>gi|310657970|ref|YP_003935691.1| hypothetical protein CLOST_0660 [Clostridium sticklandii DSM 519]
 gi|308824748|emb|CBH20786.1| protein of unknown function [Clostridium sticklandii]
          Length = 690

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 195/426 (45%), Gaps = 11/426 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D L+ +PN+  F + +  +L  S   +     ++ I+I  +  +N   G A GD+V+ 
Sbjct: 265 FYDKLSNLPNKHYFEEYIKPLLAKSDIQNQ---ALIFINIKNFSAVNISYGYAFGDEVIK 321

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   +  +      L R+  +RF + + +  +  +I      +    +  ++L   + +
Sbjct: 322 KIALNLKNINTVKTTLFRMESDRFLLFVENYTDENEILSLIAQINNVFSTSLDLSNSDYS 381

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           +T  +G        +    ++KN  +A+ + K     +   F      +      I+ +L
Sbjct: 382 LTVELGIVKLDEEDLELDRIMKNGAIALKNVKRDTFVNYVFFNKDMEEALIRQNKIEREL 441

Query: 712 CLAVE---NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             A+       +Y+ + P + ++  +I+G EAL +      G++S  EF+ IAEE  +I 
Sbjct: 442 RKALADPLQEIIYVEFQPQVDIISGKILGFEALARMKSEDLGHVSPMEFIPIAEEKLLIV 501

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  F+L++    I +          ++ INI++  +L ++  + +  +I +     S+I
Sbjct: 502 ELGNFVLKKSCEFIKTLNQHNIFNQ-WVAINISAAQILRSDFVKTILGIIEECDCDKSQI 560

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +ES+++ N E     L RLR+ GI ++LDDFGT  S  S L     D +K + S +
Sbjct: 561 ELEITESLLIDNFELVNNQLDRLRRFGIKISLDDFGTGYSSFSMLEETNIDKLKIDRSFI 620

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              TE  +  +I   II MA  +  T+IA+ +  +     L+   CD  Q  + + P+ F
Sbjct: 621 NRITEDNLEVSIAEDIISMAHKLGLTVIAEGVESQNQKNCLSEHECDIAQGYYYSKPISF 680

Query: 947 NSILKL 952
              +K+
Sbjct: 681 EKAIKM 686


>gi|94312902|ref|YP_586111.1| putative diguanylate cyclase/phosphodiesterase [Cupriavidus
           metallidurans CH34]
 gi|93356754|gb|ABF10842.1| putative diguanylate cyclase/phosphodiesterase [Cupriavidus
           metallidurans CH34]
          Length = 441

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/425 (25%), Positives = 208/425 (48%), Gaps = 8/425 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+  RQSFL+RL T L   AT    R +++++ ID ++  ND+ G   GD +L+ +
Sbjct: 19  DPLTGVVARQSFLNRLETRLHSEAT---PRFSLLLVGIDDFRAFNDMHGHMEGDAILLQV 75

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            RR+ +      ++ R+ G+ F ++L S ++   +   + A+   ++ P  L  R   V 
Sbjct: 76  ARRLRDAAPRDAVVGRVGGDEFAVLLTSISDPTLVRHVSAAILSMLSAPHELNGRRHHVL 135

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCL 713
           AS+G     +   T+S++L  A LA+  AKH GG  +  F+         R+ + + L  
Sbjct: 136 ASLGACVMPTGGDTTSDVLAAASLALARAKHDGGRTIRFFKPQMRTDVMTRLSLVQALRE 195

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A    +  L+Y P + L D  ++G EAL++W HP  G ++ + F+       +   + ++
Sbjct: 196 AYAQRQFELLYQPQVDLRDGRVLGAEALMRWRHPTLGLLAPAAFIDALAASSVAADVGMW 255

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L        +W       P  + IN+ +  L ++ L   ++ ++      P R+++  +
Sbjct: 256 LLHTACAQARAWSLTFPDAP-RVAINLFAAQLSESRLLTEVRHVLRALELPPDRLEIEIT 314

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E++ +   +     L  LR+ G++LT DDFGT  + LS+L   P D +K + S +   T+
Sbjct: 315 ETIALQQGDEVSGQLQALRRDGVTLTCDDFGTGYASLSFLKSFPVDRLKIDQSFIRNVTQ 374

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                AI+RS+I + +++   ++A+ +      + L   GC   Q      P+  + + +
Sbjct: 375 DSVDAAIVRSVINVGQSLRIGVVAEGVENAAQREFLLANGCVEAQGYLYGRPMSADLLTE 434

Query: 952 LLKER 956
            L+ +
Sbjct: 435 HLRHQ 439


>gi|304410210|ref|ZP_07391829.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS183]
 gi|307302079|ref|ZP_07581837.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica BA175]
 gi|304351619|gb|EFM16018.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS183]
 gi|306914117|gb|EFN44538.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica BA175]
          Length = 768

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/441 (23%), Positives = 201/441 (45%), Gaps = 18/441 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    L      +     L   ++++DI  ++
Sbjct: 334 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQHL------ADLKHELAGAMVLLDIKHFR 384

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +LV   RR+ +L   PD+LARL G+ F ++         +       
Sbjct: 385 HINDIIGFANADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLL----KS 440

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++T   G      +      +++ AE+A+  A             
Sbjct: 441 LDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQG 500

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I  DL + +  ++LYLV+ P + L   +  G EALI+W HP  G I   E
Sbjct: 501 ADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  ++ ++L++  + +++W+ +     + + IN+++ DL+D  L   + +
Sbjct: 561 FIQLAENSGNIDIVSQWVLQQAIQQLVAWQQRG--MLLKLAINLSAHDLVDTRLPNQIAS 618

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L R R +G+S+ +DDFGT  S L+YL  +
Sbjct: 619 LLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKIL 678

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK + S +       + + I+ + I +   +  T++A+ +     +  L  + CD 
Sbjct: 679 PVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVDILRNLNCDI 738

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL         + 
Sbjct: 739 IQGYVFSKPLKAAEFDLWFEA 759


>gi|238063085|ref|ZP_04607794.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237884896|gb|EEP73724.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 764

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/427 (26%), Positives = 208/427 (48%), Gaps = 12/427 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E    +  +   A+ D LTG+PNR +F  RL   L      D     V+++D+D +K++N
Sbjct: 328 ENMWLVARLRRLAYTDQLTGLPNRLTFTRRLRRAL-----RDEAPVAVLLLDLDGFKQVN 382

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L S+  R+   +     +ARL G+ F +++  +   ++    A  +  +
Sbjct: 383 DRFGHVTGDGILTSIAGRMERAVAGDGSIARLGGDEFAVLVDGDR-KVRPEHLAERLLDA 441

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +       E  +  +ASIG A +     + +++L++A++AMY AK  G +   +      
Sbjct: 442 LQPSPGEEEAGVHPSASIGIAEYGPQHASHTDLLRDADIAMYAAKAAGKSAYRTCTPALR 501

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  +  DL  AV+  +L+L Y PI+ L   E+   EAL++W HP+ G ++ + F+
Sbjct: 502 EAAVGRAELIADLRRAVDEEQLHLEYQPIVDLATGEVRSAEALVRWRHPRLGLLTPARFL 561

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  I+ +++    R   +WRD        + +NIA+  L   +L   + A  
Sbjct: 562 PLAEETGLILPIDRWVIHEACRAAATWRDHCPEA--TVAVNIAAAHLCRPDLIATVTAAT 619

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    +P  + L  +ES ++   +     L +LR++GI + +DDFGT  S LSYL  IP 
Sbjct: 620 AGAGLAPRALTLELTESALIEGSDTVLDRLRQLRELGIRIAIDDFGTGYSSLSYLHRIPA 679

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +T   E     A +  +  +A   + T++A+ +  +   + +T +GC + Q
Sbjct: 680 TELKIDRSFVTRLGEDARAYATVEMVTRLAGAFDLTVVAEGVETDGQHEAVTAIGCVHGQ 739

Query: 937 DSHVASP 943
                 P
Sbjct: 740 GWRYGRP 746


>gi|240137511|ref|YP_002961982.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL
           domains [Methylobacterium extorquens AM1]
 gi|240007479|gb|ACS38705.1| putative diguanylate cyclase/phosphodiesterase, GGDEF and EAL
           domains [Methylobacterium extorquens AM1]
          Length = 668

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 205/434 (47%), Gaps = 14/434 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LTG+ NR  F+ R    L            +M++D+D +K +NDV G +
Sbjct: 232 EEMRERATHDGLTGLLNRAGFIQRAEEQLAA-----GASVCLMLLDLDGFKSVNDVYGHS 286

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  + RRI   +      ARL G+ F ++  S       A  A  + +++A P  
Sbjct: 287 TGDRVLAEVARRIRVAVPVDCDAARLGGDEFALVYDSARVIESPAALAERLIRTVAQPFE 346

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
             +    +  SIG     S  +T   +L  A+ A+Y AKH G NH   F    S+    R
Sbjct: 347 SFDTG-RLGMSIGICHRPSDSLT--HLLSCADEALYAAKHSGRNHFRLFDDGLSTRLEMR 403

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              + DL  A+   EL + + PI       +  LEAL++W HP  G +  ++ +  A   
Sbjct: 404 RDCERDLSQALAEGELEVWFQPIFGPDGRSVTNLEALVRWHHPVHGWVPPADLISAAAMA 463

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            + +++  F+LE++   + + R    +  + + +N++ +++    + E +   +      
Sbjct: 464 GLTESLLRFILEQVCAMLCALR-TRGLHDLSVAMNVSPREMAQIAVDEIVLGRLRVLGLP 522

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + +++  +E   + + E  +  L  L + GI + LDDFGT  S L+ +  +  D VK +
Sbjct: 523 ATALEIEITEETAL-DIEAVQGKLLALSRAGIRMALDDFGTGYSSLASVRQLRADRVKID 581

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+TG +E   +  ++++++ + + +   ++A+ I    D+  L  MGC ++Q  H+  
Sbjct: 582 RSLVTGLSEAEDKRGLVQAVLGLGRALGLEVVAEGIETADDLATLQAMGCPFMQGYHLGR 641

Query: 943 PLGFNSILKLLKER 956
           P   + IL+ L  R
Sbjct: 642 PQPRDDILRFLDAR 655


>gi|126652693|ref|ZP_01724854.1| sensory box/GGDEF family protein [Bacillus sp. B14905]
 gi|126590542|gb|EAZ84660.1| sensory box/GGDEF family protein [Bacillus sp. B14905]
          Length = 701

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 209/434 (48%), Gaps = 10/434 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++S   +   A+ D++T +PN       L   L     ++  +  V+ I+ID++  I 
Sbjct: 251 DLEQSQRELQFQAYHDDITLLPN----EHLLLKTLKEKLHENGHQKAVIAIEIDRFAAIR 306

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             +GI+  + ++  +  RI  +L       +L   +F I +       ++  F + ++ +
Sbjct: 307 SSIGISHSNKMMKLVAERIQTILPPHYFATKLQEGQFVIYIHHVKTIEELLQFCLNLKSA 366

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSS 699
           +  P+ +    +    ++G A     K T  E+L +A+LAM  ++            +S 
Sbjct: 367 MKKPLQVQLFSLNGNLNMGIAL-QEEKWTGEELLMHAQLAMRESRQIPQRFLFYKPYMSK 425

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +DR+++++DL  A+  +E YL Y P + L    I  +EAL++W HP  G +S   F+ 
Sbjct: 426 GIADRILLEQDLHNALAKNEFYLDYQPQVNLKSGAIESVEALVRWRHPNRGFVSPEIFIP 485

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  ++LE   +    W +Q   PPI + +N++   L   +L E +  ++ 
Sbjct: 486 IAEECGLIIPLGKWILETACQQAKQWEEQGL-PPIKVAVNLSLGQLFQQDLVEMVGEILQ 544

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++      ++L  +ES+ M N ++   LL  L+ +GI + +DDFGT  S LSYL   P D
Sbjct: 545 RSKLDAHYLQLEITESMTM-NIDQMTQLLHELKALGIQIAVDDFGTGYSSLSYLKDFPID 603

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +          A++  II MAK++   ++A+ I     +  L   GCDYIQ 
Sbjct: 604 CLKIDRTFVRNVQHNPNDEALVSMIISMAKHLRLKVVAEGIEEVEQLSFLMEGGCDYIQG 663

Query: 938 SHVASPLGFNSILK 951
              + P+    I +
Sbjct: 664 YLFSRPISPQQISE 677


>gi|160877598|ref|YP_001556914.1| PAS/PAC and GAF sensor(s)-containing diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160863120|gb|ABX51654.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS195]
 gi|315269796|gb|ADT96649.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS678]
          Length = 816

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/597 (20%), Positives = 247/597 (41%), Gaps = 21/597 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ Q         + +     R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQASLQQVHERLSRAVKQLNDSELRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   + G  + W   +H +DRD     L  +V  +    +   R+R  +  + W++ 
Sbjct: 288 IGYAPDELAGVFQTWETRLHPDDRDIVLDALQEYVSGKSKEFESVHRLRHREGHYVWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G   R IGI  D++E  K+   I     Q ++TG   +P    F+ RL+ 
Sbjct: 348 RGMLVDWDPQGRPTRMIGIHMDVSESAKNHAAINELVDQ-SVTGRKMLP--DVFMARLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L           +++++++D+   +  +    + + +L  +  R+         + RL 
Sbjct: 405 FLTQ-GNSSGQWGSLLLVEVDRLGLVATLNSHEL-ERLLTQVAARLSSYFTENITVGRLE 462

Query: 614 GNRFGIILISENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              F ++         +A          +R+ IA P +       ++A++G     S + 
Sbjct: 463 SGDFVLLAKDLAIDASVAARRALALASELRQVIARPFHYGHHHFELSANVGICLLDSIET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYH 725
              + +++ AELA   AK  G      +             ++++L  A++   + L++ 
Sbjct: 523 LDPALVMRRAELATLSAKRPGQAGCAFYHAEMDLRLSRDEQLQQELQTALQQDSMTLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++     E+V  E L +W       I  +EF+ +AE+  MI  ++L++ +R+ + I + 
Sbjct: 583 PVMNAHS-ELVSAEVLTRWYRADGEFIPPAEFVALAEQGGMIAELDLWVAKRVCQFIQTS 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q    P  + +NI++      +  + + AL  +      ++ +  +E+  +  P+   
Sbjct: 642 HAQGRSLP-TLTLNISAFSFGQADFLDALIALTKEHGIVAHQLGIELNEAAFLMQPQFVA 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
             + +L   GI + LD FG+  S LS L   P   VK + S +          ++++I  
Sbjct: 701 ERVSKLVDAGIGIVLDHFGSGSSALSCLANQPLVAVKLDMSCIDSLATMPQR-VKALIVS 759

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+     ++AK +      +     GCD  Q    +  L     ++L+  R PL+++
Sbjct: 760 AQQFNLHVVAKGVESPQHYQAFVEFGCDGYQGYLFSRALNQVDFIQLVCPR-PLLRS 815


>gi|113968965|ref|YP_732758.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113883649|gb|ABI37701.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
          Length = 728

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/575 (20%), Positives = 231/575 (40%), Gaps = 23/575 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                 +I   +     +  + +   +               D               L 
Sbjct: 156 FQHAAVMIGSAMELTRIAHDMLASEHKYREVFNQLPLACALLDKQNQLTMLNKVALQTLP 215

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +  G       +    +   +       L        G+   E  ++ ++ Q  W+ +  
Sbjct: 216 VQHG------YDLFSMVREEEHAMLTDTLHMVREGVLGQAWCELPLK-SNLQLDWLRLSF 268

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +  +   +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L    
Sbjct: 269 SQIHGNKDTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---Q 322

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           T D +   V  ID+D+++ IN+V G   GD +L  L  R+ +L++  DI+ARL G+ FG 
Sbjct: 323 TKDEMPTCVAFIDVDQFQVINNVSGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG- 381

Query: 620 ILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           IL+   N       A  +   +A        R   V+ S+G A    S      ++  A+
Sbjct: 382 ILMHYCNVDSAQHIANRICTQLATHEFIWENRCHNVSVSMGIAKLEKSATDIYTVMSQAD 441

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEE 734
            A   AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L  EE
Sbjct: 442 AACRLAKDKGRNGWHLYSAKDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLSREE 501

Query: 735 I-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             + LE L++        +S + F+  AE   +   ++L++++ + +   S  D      
Sbjct: 502 SGLHLEVLLRMVQANGTIVSPAIFLPAAERYNLAAKVDLWVIDNLLKWGSSHLDIWQQLE 561

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N+++  L D+E    ++  +        ++ +  +E+  +   +++  L+  LR 
Sbjct: 562 L-VSVNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIEVLRP 620

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +   L LDDFG   S  +YL  +  D VK +G  +      E   AI+++I  + +++  
Sbjct: 621 LNCQLALDDFGAGFSSFAYLKRLNVDYVKIDGQFVINLCEDEADQAIIKAICQLGQDMGF 680

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++A+ +       +L  +G DY Q   +  P+  
Sbjct: 681 DVVAEFVESTEIATKLKSLGVDYAQGYAINKPMPL 715


>gi|237797366|ref|ZP_04585827.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|237805946|ref|ZP_04592650.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020216|gb|EGI00273.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331027056|gb|EGI07111.1| GGDEF domain-containing protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 531

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/430 (27%), Positives = 209/430 (48%), Gaps = 13/430 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L     + +++  V +ID+DK+K IND  G AVGD  
Sbjct: 103 LARHDPLSGLLNRRVFHEQLVARL----QETSMQTAVFLIDLDKFKLINDTHGHAVGDAA 158

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + E        +ARL G+ FG+ +    + +++A  A ++   IA        
Sbjct: 159 ICAVAESLREATAGLQASVARLGGDEFGLAVSGNFSQVELATLAESVLSKIAAS-RTSVS 217

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            + ++AS+G A        +  +L+ A+ AMY  K  G      + VS  R  R+     
Sbjct: 218 RVALSASLGVAVSPLDGSDADILLQRADSAMYRGKSGGRASFHFYEVSFEREQRLQELFA 277

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 278 QELRHAIEEKHIQPFYQPIVSLPEQRLAGFELLARWLHPERGIIMPMDFIPVAEQLGLIK 337

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +     + W          + IN+ S  + + +  E ++ L S+  +  SR+
Sbjct: 338 QLTESLLVQAFDHTLDWPS-----DFTLSINVTSLMIENLDFPEWLEQLASEGRFPLSRL 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N   +RL L RLR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 393 EVEVTENALVANMNSARLNLERLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 452

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 453 DTSLDNQNEMVKAILALGKSLRMKITAEGVEHEQLADWLAINKCDFAQGYLFGKPLPLAQ 512

Query: 949 ILKLLKERFP 958
              LL    P
Sbjct: 513 AKALLAMSAP 522


>gi|325282595|ref|YP_004255136.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324314404|gb|ADY25519.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 866

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/455 (21%), Positives = 198/455 (43%), Gaps = 30/455 (6%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + +   +   A  D LTG+ NR +   +L  +   +         V+ ID+D +K+IND
Sbjct: 412 LQAAQAELAYRATHDALTGLLNRPALERQLQAVCRDTPPQG---MAVLFIDLDHFKQIND 468

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L  +  R+   ++  D +AR  G+ F ++L S  NS +    A  + + +
Sbjct: 469 TLGHPVGDQLLQEVAGRLRRSVQPGDEVARQGGDEFTVLLRSVQNSAQAEQAAQHLLEQL 528

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSF 700
           ++P+      + ++ASIG A +       + + K+A+LA+Y AK  RG        + + 
Sbjct: 529 SIPVIAGGHPLFISASIGIALFPQHGTDVTTLQKHADLALYRAKQERGCYRTYQPALGAE 588

Query: 701 RSDRVMIKEDLC------LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +++ +++ +        AV      L Y P++       + +EAL++W  P WG +  
Sbjct: 589 ALEQLTVEQAMHGVLTPDGAVATDGFSLQYQPVVDSRTRRPLMVEALLRWHGP-WGEVPP 647

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAE   +I  +  +      R +  WR       + + +N++++ L   +L   +
Sbjct: 648 QLFVPIAERSHLIVQLGAWTARTALRQLREWRQLWPE--LKVSVNVSARQLAQPDLAAQL 705

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            AL+ +    PS + +  +E+  +   +        L++ G+S+ LDD GT  + LS L 
Sbjct: 706 AALLDECGLPPSALVVELTEAAAVDIRQ--LRAFQELQEAGLSIALDDVGTGYASLSSLA 763

Query: 875 YIPFDTVKFNGSLMTGSTE---------------KRIAILRSIIPMAKNIETTIIAKDIY 919
            +P   +K + SL                         ++ ++I   +     ++A+ + 
Sbjct: 764 QLPLQMLKIDRSLTVQLAPLPQGNCGHAQTGQRRSTRPLMHALITFGRESGLQVVAEGVE 823

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               ++ L   G   IQ    + PL    + + L+
Sbjct: 824 TPEQLELLECWGPIQIQGYLESPPLSTEDMTEYLQ 858


>gi|90418804|ref|ZP_01226715.1| possible signaling protein, diguanylate cyclase, EAL and GGDEF
           domains [Aurantimonas manganoxydans SI85-9A1]
 gi|90336884|gb|EAS50589.1| possible signaling protein, diguanylate cyclase, EAL and GGDEF
           domains [Aurantimonas manganoxydans SI85-9A1]
          Length = 645

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 206/437 (47%), Gaps = 15/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       A  D LT +PNR     RL  +      D      V  +D+D++K+IND L
Sbjct: 199 RAARMNEELAHFDTLTHLPNRAYTNRRLDEL----TRDTYEPFAVHFVDLDRFKRINDTL 254

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL+   RR  E++     ++R +G+ F +IL    ++   A  A  + +++  
Sbjct: 255 GHKAGDAVLIETARRFREVVGTSGFISRFAGDEF-LILQYGADAEAAAGLADRLVEAMRE 313

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  +     T   S+G A +      +  + + A+ A+Y AK  G +    F        
Sbjct: 314 PFMIHGAPATTGCSVGTALFPLHGEDAELLTRQADTALYQAKSAGRSTARMFAADMLDRE 373

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+ I+  L LA+E+++L L + P++      I   EALI+W  P    IS  EF+ +A
Sbjct: 374 TNRLRIETGLRLALEDNQLRLFFQPLVEPNTLRISTCEALIRWMAPDGRMISPGEFLPVA 433

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  ++  +  + L    R    W        + + +N++   LL  ++ E +   + +T
Sbjct: 434 EETGLMGTLTDWTLYEAMRIASDWPSS-----VAVAVNLSPSQLLRADMVEVISTALRET 488

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + P R+++  +E++++G  +     L  LR +GIS+ LDDFGT  S  SY+  +P   V
Sbjct: 489 NFDPRRLEIEITENLLLGEHQPVLAKLEALRDMGISIALDDFGTGFSNFSYIARLPIGKV 548

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDS 938
           K + S +TG    ++R ++LR  + +  +++  I+ + +     ++ ++       IQ  
Sbjct: 549 KIDRSFLTGIIADKRRQSLLRGFVHLVASLDLRIVVEGVETIELLEFVSSDPQVTQIQGF 608

Query: 939 HVASPLGFNSILKLLKE 955
               PL   +I  LL+ 
Sbjct: 609 VFGRPLPETAIGTLLRA 625


>gi|302385664|ref|YP_003821486.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium saccharolyticum WM1]
 gi|302196292|gb|ADL03863.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Clostridium saccharolyticum WM1]
          Length = 1278

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/577 (19%), Positives = 228/577 (39%), Gaps = 45/577 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG-----SMHGPIRNWL-----PYI 456
             L      D +++ ++  +          IL           + G + + L       I
Sbjct: 109 YHLTDNTVYDELFELNVAANT-------YKILFYQKDKFRIPQVEGRLDSLLTKVADHMI 161

Query: 457 HINDRDNFRTILDSF-----VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           H  D++ F    +       +      ++ EFR    +    W+ +        +     
Sbjct: 162 HPEDKEKFLKFWEESTLLDRLHASGKVMKGEFRKLLVNGDHCWVRVIAVLFRCGDCAEPV 221

Query: 512 YIGIANDITEQKKSLEG-----ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
            +    DI  +KK  E             D++TG+     F ++   +L       +   
Sbjct: 222 IMCYVQDIDRRKKLEEEEQKKLREMREETDSMTGLFRYGPFFEKAEQLL---KERLDGTY 278

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISEN 625
            ++ IDI+ +K  N+  G   GD  L+ + + +  L    + +A  + G+ F IIL  + 
Sbjct: 279 VMVAIDIEHFKLFNEWYGEEEGDRFLIKIGKHLKSLELLYNTIAGYMGGDDFIIILPEDI 338

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +          + K I   +           + G     +S ++ S M   A +A+   K
Sbjct: 339 S------ILKGLEKEINNYVRQYGGNAGFLPAFGIYRIENSSLSVSMMYDRAAIALNSVK 392

Query: 686 HRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                        +        ++  ++  A+E  E      P   ++  +I+GLE L++
Sbjct: 393 GNYARRMGWYDPGMKQKMEKDQLLLSEIQRALEKREFIFYLQPQCNMLTGKIIGLETLVR 452

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G IS  EF+ + E+   I  +++++ E + R + +W  +     + I +N++  
Sbjct: 453 WQHPLRGLISPGEFIPLLEQNGFITYLDIYIWEMVCRQLNAWIREGKRL-VPISVNMSRM 511

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           D+   ++ E  + L+S+    P  +++  +ES    + ++ R +L  LRK G  + +DDF
Sbjct: 512 DIYAIDVVEKFKELVSRYEIDPRYLEIEITESAYAEDDDKIRRVLEDLRKAGFPVFMDDF 571

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAKDIY 919
           G+  S L+ L  +  D +K +   +    E   +    IL +I+ MA+ ++  IIA+ + 
Sbjct: 572 GSGYSSLNMLKDVNVDVIKIDTKFL-DMNENSQSRGMGILETIVRMARVMQMKIIAEGVE 630

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  +  L  +GC Y Q  +   PL      +LL E 
Sbjct: 631 KKEQVDFLRNIGCIYGQGYYYYKPLPLGEAERLLMEE 667



 Score = 68.4 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 428  VTTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            + T+     I+  +   +       ++  IH  DR+    +          R   EFRV 
Sbjct: 1012 LYTSLRFMEIVDYSKEELEERFGSRFMAMIHPEDREKVYELTKDLKPEENLR-GVEFRVL 1070

Query: 487  AADNQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQ-DNLT----- 539
            +    + W++   +    ++G  L  + +  D I E ++ +E       Q + +T     
Sbjct: 1071 SKSG-YIWILCHSKLTVKADGSFLYGVMLHIDEIVELRRQIECSRKMLNQMERMTLGMPE 1129

Query: 540  ---GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD-----V 591
               GIP+ Q+    +   L       +    +++ +I         +G    D       
Sbjct: 1130 LMNGIPDSQAAASMMEAYLAHRRFLPS---ALILFEI---------VGPEEEDCNAGKPF 1177

Query: 592  LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
                   + +  +  DI+  L+G    ++L      + + +    +  ++A  +     E
Sbjct: 1178 FAPYMESLKQFFREDDIIC-LNGVYEAMVLCKNIRKIDMENKLKRVTGALARELTGGAEE 1236

Query: 652  ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                 +  F    +     ++  + A  A+  A+    
Sbjct: 1237 SLYRLNTAFVMIETQDKDLADCCEKARTALSQARQISK 1274



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 429 TTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
               ++  +L   +  +     +      IH  D    R  +  ++        +  R++
Sbjct: 875 FVNNELLRLLEYDTYELFTKAVDGKIANLIHPEDLRRIRESIFHYIS-PGMEYAFRHRMK 933

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE----QKKSLEGILCN 532
             D  + W++ + R +   +G +   + +  DI++    QKK  +     
Sbjct: 934 KRDGSWLWVMTKSRVVQAEDGRLA-VVNVCMDISDTLLAQKKLQDTNQVL 982



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 1/104 (0%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +    +   I G     M       L  ++ +D D    I +S         +  FR  
Sbjct: 718 ILRVNQEYYRITGDNPADMEEHRWFLLNKVYKDDMDWVLNIFESAYTNPLRGGEGIFRQY 777

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               +  W+ +R+  +   +   L Y G   D TEQ +  + + 
Sbjct: 778 RPGGELMWVHLRVFFLREQDEHRLYY-GSVRDATEQMEQRQKLE 820


>gi|320321248|gb|EFW77382.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331190|gb|EFW87150.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 649

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 214/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNANLLLANRDSLTGLPNRRHFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +L+ +  R+   +     ++RL G+ F +++  + +   +  F   +   I  
Sbjct: 271 GHSVGDRLLMLVAERLISAVSDTVQVSRLGGDEFALLVKGDISDEALLMFGKHICTLIHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 GFELSEIPIQIGATLGFATFPATADNAAQLYEYADYALYQGKNHNPGSTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 NADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L +  +  +SW       PI +  N+++ D    E  + +  +I  +
Sbjct: 451 ERIGMINELTAPLLTQALQRALSWPS-----PIKLSFNLSAHDCATWESVKKIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIGQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K   S +T          I++S++ ++ ++    + + +  + ++  LT +GC  +Q + 
Sbjct: 566 KIARSFVTSVHDNPTSYKIVKSLVALSLDMSLDCVIEGVETQDELNMLTSLGCTMVQGNF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPITFAETLVWIE 640


>gi|218528994|ref|YP_002419810.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218521297|gb|ACK81882.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 668

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 204/434 (47%), Gaps = 14/434 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   A  D LTG+ NR  F+ R    L            +M++D+D +K +NDV G +
Sbjct: 232 EEMRERATHDGLTGLLNRAGFIQRAEEQLAA-----GASVCLMLLDLDGFKSVNDVYGHS 286

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +  RI   +      ARL G+ F ++  S       A  A  + +++A P  
Sbjct: 287 TGDRVLAEVAHRIRVAVPVDCDAARLGGDEFALVYDSARVIESPAALAERLIRTVAQPFE 346

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
             +    +  SIG     S  +T   +L  A+ A+Y AKH G NH   F    S+    R
Sbjct: 347 SFDTG-RLGMSIGICHRPSDSLT--HLLSCADEALYAAKHSGRNHFRLFDDGLSTRLEMR 403

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
              + DL  A+   EL + + PI       +  LEAL++W HP  G +  ++ +  A   
Sbjct: 404 RDCERDLSQALAEGELEVWFQPIFGPDGRSVTNLEALVRWHHPVHGWVPPADLISAAAMA 463

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            + +++  F+LE++   + + R    +  + + +N++ +++    + E +   +      
Sbjct: 464 GLTESLLRFILEQVCAMLCALR-TRGLHDLSVAMNVSPREMAQIAVDEIVLGRLRVLGLP 522

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + +++  +E   + + E  +  L  L + GI + LDDFGT  S L+ +  +  D VK +
Sbjct: 523 ATALEIEITEETAL-DIEAVQGKLLALSRAGIRMALDDFGTGYSSLASVRQLRADRVKID 581

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+TG +E   +  ++++++ + + +   ++A+ I    D+  L  MGC ++Q  H+  
Sbjct: 582 RSLVTGLSEAEDKRGLVQAVLGLGRALGLEVVAEGIETADDLATLQAMGCPFMQGYHLGR 641

Query: 943 PLGFNSILKLLKER 956
           P   + IL+ L  R
Sbjct: 642 PQPRDDILRFLDAR 655


>gi|332995163|gb|AEF05218.1| Intracellular signaling protein [Alteromonas sp. SN2]
          Length = 866

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/423 (26%), Positives = 212/423 (50%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+K+    ++ +A  D+LT +PNR  F  RL   +            V+ ID+D++K 
Sbjct: 429 IEERKEIELKLIHDAHHDSLTDLPNRSMFTSRLELAVASKQRYTENYFAVLFIDLDRFKV 488

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD+ LV + RRI   ++  D+LARL G+ F ++L +  +   + + A  + 
Sbjct: 489 INDTLGHHAGDEFLVEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDLTDVQEVASRII 548

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            SI+ P  L  RE+   ASIG A+  S   ++ E+L++A+ AMY AK  G      F   
Sbjct: 549 NSISEPFLLDGREMYSGASIGIANLESYYRSADEVLRDADAAMYQAKTLGRGRFVMFDKS 608

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     + + ++ +   A+ + E      P+I L D   +  E  ++W HP +G I+  +
Sbjct: 609 MRDRLIEELELENEFRRALRDEEFEYFLQPVIDLRDNTTLYNEMYVRWCHPTFGKIAREQ 668

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F  +AE+  +   ++LF L +    +             I +N++   LL   +   M +
Sbjct: 669 FRQVAEQSGLTLDLDLFQLRKACELLA-HAKATGEDKGRIAVNVSIIHLLQASMVNKMIS 727

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +   SP  +   F E+ +    +     + +L++ G++L LD+FG+  + LSYL   
Sbjct: 728 LIDEYKISPHDLVFEFDENDLNRRSQFILPAIKKLKRAGVTLVLDNFGSGLASLSYLFAY 787

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF+ +K +   +     +++ + +++S++ ++++++  +IA+ +     +  LT + C+Y
Sbjct: 788 PFEFIKIDHRFVRSLPRSQRNLKLIQSVMLISEHLKFKVIAEGVDSPAQLNALTDIECNY 847

Query: 935 IQD 937
            Q 
Sbjct: 848 AQG 850


>gi|85711897|ref|ZP_01042952.1| putative GGDEF domain membrane associated protein, putative
           nucleotide cyclase/phophodiesterase box [Idiomarina
           baltica OS145]
 gi|85694294|gb|EAQ32237.1| putative GGDEF domain membrane associated protein, putative
           nucleotide cyclase/phophodiesterase box [Idiomarina
           baltica OS145]
          Length = 886

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/472 (23%), Positives = 220/472 (46%), Gaps = 14/472 (2%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE--GILCNAFQDNLTGIPNRQ 545
           AD    W   R+       G +L ++ + +  + +K + +   ++  A  D++T +  R 
Sbjct: 418 ADAHVFWQAARVNQTILIAGILLAFLLLESIESNRKLTEQQGRLIQMANFDSVTQLMRRD 477

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
                +   L ++ TD +    ++ ID+D +K IND LG+  G+++L  +  R+ E+   
Sbjct: 478 VLETNINQWLSVNPTDAH----ILFIDLDGFKPINDSLGLHTGNELLKRIATRLAEVSPA 533

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              L+R S + F + L    +     + A ++  ++     +   ++ +TASIG AS   
Sbjct: 534 TAQLSRFSSDEFIVFLPG-ADKTSSTEVARSLLTALRDKFEIDYIDLYLTASIGIASREF 592

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLV 723
              ++   ++NA++AM  AK  GGN    F  +     +  + ++  L +A+EN +L + 
Sbjct: 593 QVSSAEAFIQNADVAMTKAKESGGNTFAFFTQAMRLKYQTDLTLRNQLQVAIENQQLEVF 652

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P + L  E+I+G+EAL +W   +   I    F+ +AE    I  ++  +LE   R++ 
Sbjct: 653 YQPFVDLKSEQIIGVEALARWRDKQGNWIPPDVFIPLAEHTGQIMPLSDLILEMSIREVA 712

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            +  Q   P   + IN++ K L + +L   +  L  K     S ++   +E++++ + + 
Sbjct: 713 QYVAQ---PNFILSINLSPKQLQNGQLVSQVTQLAHKYKIPFSTLQFELTETMLVDDAKA 769

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRS 901
           +   L  LR +G  + +DDFGT  S LSYL  +P D +K + S      +      I  +
Sbjct: 770 AFKQLAELRTLGCKIAIDDFGTGYSSLSYLNDLPADIIKIDRSFTRRVLTDSSSHPITEA 829

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +I MA  +  +I  + I    +     R  C   Q  +   P+    +++++
Sbjct: 830 VISMALGLNKSITVEGIENAEEAAYFARRSCQAAQGFYFYRPMPLEQLIEVI 881


>gi|148978405|ref|ZP_01814899.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145962431|gb|EDK27710.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 621

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/444 (23%), Positives = 192/444 (43%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I ++K + + I      D  TG  NR +F  RL   L       +    V+ I     
Sbjct: 173 QEIDKRKAAEQKINFQKNHDLGTGFLNRSAFESRLNHKLSSQRRLMDCSFAVIHIGFTNG 232

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G    D VLV   +RI  +     + AR +     +    ++   ++ +    
Sbjct: 233 RRIQARYGYTALDQVLVEYRKRIDSIADIEVLTARPTSVDLVLAFSVKDLHHRLEELCQT 292

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + K       +   ++ + A IG A+ T+++  +  +L+ +  AM   K  G      S 
Sbjct: 293 LVKVGHSEFAIENDKVHLHAFIGIAT-TNNEDDAESILQKSSEAMLACKDSGQKFAYYSQ 351

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +S    I+  L  AV N +L L + P +  +    VG EAL++W HP  G+IS+ 
Sbjct: 352 SHTDEQSHINKIEGYLLQAVRNDDLVLYFQPKVCPLTHRWVGAEALLRWRHPVLGDISNE 411

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +   +    + +N+++  L +    E + 
Sbjct: 412 TLIHMAEQNGLIFEVGSFVLRNAIEKAKEWSE--YVEDFKMAVNVSAVQLKNAHFAEQVV 469

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+      P  ++L  +ES ++ +   ++  L  L  IG++L+LDDFGT  +  SYL  
Sbjct: 470 HLLETYHLEPHFLELEVTESGLIADEVVAKNTLESLHDIGVTLSLDDFGTGYASFSYLKK 529

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +     + +   I+RSI+ +AK ++  +  + I  E+  K +   GCD
Sbjct: 530 FPFDAIKIDKSFIDQMLNSSEDSEIVRSIVQIAKKLDLKVTIEGIESEVQEKFIIDEGCD 589

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+        L  + 
Sbjct: 590 VGQGYLYGRPMPSQEFEHSLINQN 613


>gi|330991958|ref|ZP_08315907.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329760979|gb|EGG77474.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 701

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 206/439 (46%), Gaps = 11/439 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I        D + ++ S + +   A  D LTG+PNR SF +RL   +  +      +  +
Sbjct: 231 IAGIACYVIDGSLRQDSYQELHRMAMSDALTGLPNRISFNERLEQEVATADRT-GAQFAL 289

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ID++K+K+IND  G A GD VL +L  R   LL   + +ARL G+ F  I    ++  
Sbjct: 290 IGIDLNKFKEINDTRGHAAGDIVLTTLAERFSALLGAGEFVARLGGDEFIAI-HRTSDRA 348

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++  F   ++ ++  PI + +  +T   SIG A +      S  ++  A+LAMY AK   
Sbjct: 349 ELHGFVERIQHALNQPIPIDDYLVTSGGSIGVAVYPVDAKDSETLISRADLAMYRAKTDL 408

Query: 689 GNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
              +  +          R  + +DL  A+ + +L L +     +    + G EAL++WDH
Sbjct: 409 HETIWYYESSLDQNLCARRALGDDLKKAMVDGQLSLSFQVQTVVATGAVSGYEALLRWDH 468

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G I   E + +A+E  +I  +  ++L++     + W        + + +N++    L
Sbjct: 469 PVRGAIPPVEILELADENGLIIQLGEWVLDQACHAAVEW-----DENVRVAVNMSVTQFL 523

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  + A+++++  S  R+ +  SE+ V  +  R+  +  ++  +G+ L LD FG  
Sbjct: 524 QPAFDTIVAAVLARSGLSAHRLVIEISEATVQRDRRRALAMARKVHAMGVCLALDAFGGP 583

Query: 867 CSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S+LS L   PFD +K + SLM    +      ++RS++     +  +++A+ I     +
Sbjct: 584 HSVLSMLYDFPFDKIKIDRSLMQKVDTDPAMAELVRSVMVAGHALHISVLAQGIETAAQL 643

Query: 925 KELTRMGCDYIQDSHVASP 943
             ++  GCD  Q   +  P
Sbjct: 644 AVVSAKGCDESQGYLIGHP 662


>gi|289627079|ref|ZP_06460033.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
          Length = 649

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 214/435 (49%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNANLLLANRDSLTGLPNRRHFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +L+ +  R+   +     ++RL G+ F +++  + +   +  F   +   I  
Sbjct: 271 GHSVGDRLLMLVAERLISAVSDTVQVSRLGGDEFALLVKGDISDEALLMFGKHICTLIHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 GFELSEIPIQIGATLGFATFPATADNAAQLYEYADYALYQGKNHNPGSTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 NADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L +  +  +SW       PI +  N+++ D    E  + +  +I  +
Sbjct: 451 ERIGMINELTAPLLTQALQRALSWPS-----PIKLSFNLSAHDCATWESVKRIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS L  +    +
Sbjct: 506 GFDASRLDLEITETAVMQDIGQVQQAIAQFRQLGCGISLDDFGTGYSSLSQLHALALTKL 565

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K   S +T          I++S++ ++ ++    + + +  + ++  LT +GC  +Q + 
Sbjct: 566 KIARSFVTSVHDNPTSYKIVKSLVALSLDMSLDCVIEGVETQDELNMLTSLGCTMVQGNF 625

Query: 940 VASPLGFNSILKLLK 954
            + P+ F   L  ++
Sbjct: 626 YSPPITFAETLVWIE 640


>gi|217975438|ref|YP_002360189.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217500573|gb|ACK48766.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella baltica OS223]
          Length = 816

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/597 (20%), Positives = 249/597 (41%), Gaps = 21/597 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ Q         + +     R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQASLQQVHERLSRAVKQLNDSELRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   + G  + W   +H +DRD     L  +V  +    +   R+R  +  + W++ 
Sbjct: 288 IGYAPDELAGVFQTWETRLHPDDRDIVLDALQEYVSGKSKEFESVHRLRHREGHYVWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G   R IGI  D++E  K+   I     Q ++TG   +P    F+ RL+ 
Sbjct: 348 RGMLVDWDPQGRPTRMIGIHMDVSESAKNHAAINELVDQ-SVTGRKILP--DVFMARLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L            ++++++D+   +  +    + + +L  +  R+         + RL 
Sbjct: 405 FLTQ-GNSSGQWGALLLVEVDRLGLVATLNSHEL-ERLLTQVAARLSSYFTENITVGRLE 462

Query: 614 GNRFGIILISENNSLKIADFAI-----AMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
              F ++         +A          +R+ IA P +       ++A++G     S + 
Sbjct: 463 SGDFVLLAKDLAIDASVAARRALALASELRQVIARPFHYGHHHFELSANVGICLLDSIET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYH 725
              + +++ AELA   AK  G      +             ++++L  A++   + L++ 
Sbjct: 523 LDPALVMRRAELATLSAKRPGQAGCAFYHAEMDLRQSRDEQLQQELQTALQQDSMTLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P++     E+V  E L +W       I  +EF+ +AE+  MI  ++L++ +R+ + I + 
Sbjct: 583 PVMNAHS-ELVSAEVLTRWYRADGEFIPPAEFVALAEQGGMIAELDLWVAKRVCQFIQTS 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q    P  + +NI+       +  + + AL+ +   + +++ +  +E+ ++  P+   
Sbjct: 642 HAQGRSLP-TLTLNISVFSFGLADFVDALVALVKEHGIAANQLGIELNEAALLMQPQFVA 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPM 905
             + +L   GI + LD FG+  S LS L   P   VK + S +          ++++I  
Sbjct: 701 ERVSKLVDAGIGIVLDHFGSGSSALSCLANQPLVAVKLDMSCIDSLAAMPQR-VKALIVS 759

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           A+     ++AK +      +     GCD  Q    +  L     ++L+  R PL+++
Sbjct: 760 AQQFNLHVVAKGVESPQHYQAFVEFGCDGYQGYIFSRALNQADFIQLVCPR-PLLRS 815


>gi|158312369|ref|YP_001504877.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EAN1pec]
 gi|158107774|gb|ABW09971.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EAN1pec]
          Length = 1121

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 195/442 (44%), Gaps = 17/442 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D++T + NR   L     +L            +M+++ID +++IN  LG   GD+VL   
Sbjct: 272 DSVTDLTNRAGLLQAGDPVLSEIMLAGRQAL-LMIVNIDHFREINTALGYEAGDEVLRMF 330

Query: 596 TRRIGELLKFPDILARLSGNRFGIILIS-----------ENNSLKIADFAIAMRKSIAMP 644
            RR+  +   P  + RL G+ F +++             E      AD   A+   +   
Sbjct: 331 ARRLRSVRPAPSCVGRLGGDEFALVMPGASQVADGVPAPERTDSAPADVGRAVLDQLDGR 390

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSD 703
           + +   ++ V A+ G A         + +L  A+ A+  A+  G    V    +   +  
Sbjct: 391 LRISGVDVEVEATAGLAVAPWCGDRIATLLPCADAALSDARRGGERVGVWRAEMVGVQPW 450

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            + +   L  A+   EL L Y P+       IV +EAL++W HP  G +    F+ +AE 
Sbjct: 451 ELALHAQLRSAITRGELVLHYQPMQEAATGRIVDVEALLRWRHPDRGLLPPGSFLPMAER 510

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  + L+   R    WR +    P  +  N++++ L+ +EL   +   ++    
Sbjct: 511 SSLIVDLTWWELDEALRQCARWRTEGLRMP--VSANLSARMLVVDELPRVVAERLAAHDL 568

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES ++  P R+  +L  LR  G+ L++DDFGT  + +  L  +PFD VK 
Sbjct: 569 PADMLTLEITESALISQPARAAAMLSELRITGVKLSMDDFGTGYNSMEILKALPFDEVKI 628

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   ++ +       AI+RS+I +   +   ++ + +  E   + LT +GCD +Q   ++
Sbjct: 629 DRGFVSDARRSLPDAAIVRSVIDLGHRLGMRVVGEGVEDEHSERMLTELGCDLLQGEALS 688

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL    +  LL  +  +   +
Sbjct: 689 PPLPARKLPPLLASKPRVTSRS 710


>gi|114048897|ref|YP_739447.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
 gi|113890339|gb|ABI44390.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
          Length = 728

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/575 (20%), Positives = 231/575 (40%), Gaps = 23/575 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                 +I   +     +  + +   +               D               L 
Sbjct: 156 FQHAAVMIGSAMELTRIAHDMLASEHKYREVFNQLPLACALLDKQNQLTMLNKVALQTLP 215

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +  G       +    +   +       L        G+   E  ++ ++ Q  W+ +  
Sbjct: 216 VQHG------YDLFSMVREEEHAMLTDTLHMVREGVLGQAWCELPLK-SNLQLDWLRLSF 268

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
             +  +   +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L    
Sbjct: 269 SQIHGNKDTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLDNLL---Q 322

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           T D +   V  ID+D+++ IN+V G   GD +L  L  R+ +L++  DI+ARL G+ FG 
Sbjct: 323 TKDEMPTCVAFIDVDQFQVINNVSGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG- 381

Query: 620 ILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           IL+   N       A  +   +A        R   V+ S+G A    S      ++  A+
Sbjct: 382 ILMHYCNVDSAQHIANRICTQLATHEFIWENRCHNVSVSMGIAKLEKSATDIYTVMSQAD 441

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEE 734
            A   AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L  EE
Sbjct: 442 AACRLAKDKGRNGWHLYSAKDPKMTRLYTEMMASVDIVSALALNQFELYFQSIAPLSREE 501

Query: 735 I-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             + LE L++        +S + F+  AE   +   ++L++++ + +   S  D      
Sbjct: 502 SGLHLEVLLRMVQANGTIVSPAIFLPAAERYNLAAKVDLWVIDNLLKWGSSHLDIWQQLE 561

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N+++  L D+E    ++  +        ++ +  +E+  +   +++  L+  LR 
Sbjct: 562 L-VSVNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLDQATKLIEVLRP 620

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +   L LDDFG   S  +YL  +  D VK +G  +      E   AI+++I  + +++  
Sbjct: 621 LNCQLALDDFGAGFSSFAYLKRLNVDYVKIDGQFVINLCEDEADQAIIKAICQLGQDMGF 680

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++A+ +       +L  +G DY Q   +  P+  
Sbjct: 681 DVVAEFVESTEIATKLKSLGVDYAQGYAINKPMPL 715


>gi|300789338|ref|YP_003769629.1| diguanylate cyclase/phosphodiesterase [Amycolatopsis mediterranei
           U32]
 gi|299798852|gb|ADJ49227.1| diguanylate cyclase/phosphodiesterase [Amycolatopsis mediterranei
           U32]
          Length = 763

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 198/430 (46%), Gaps = 14/430 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A+ D LTG+ NR  F DRL   ++      +    ++ +D+D +K++ND  G 
Sbjct: 336 QQQLTHQAYHDPLTGLANRALFADRLDRAVEQGTDGGHGPLVLIFVDLDDFKEVNDRFGH 395

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD +L ++ +R+   ++  D +ARL G+ F I+L  E ++ +    A  ++ ++  P 
Sbjct: 396 AGGDVLLHAVAQRLLSCVRTGDTVARLGGDEFAILLEGEVDAPQA--VADRIQSALRRPF 453

Query: 646 NLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +    + V AS+G      +   IT+  +L  A+ +MY  K  G +    +  S     
Sbjct: 454 AVHGTLVPVRASMGLVVPDPAEPAITADVLLGRADTSMYAGKRLGKDTTVVYHPSPDGPP 513

Query: 704 RVMIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                  L  A         LV+ PI+RL DE+ V +EAL +W       +S   F+  A
Sbjct: 514 DFP--SALRRAGGGLPEGFALVFQPIVRLADEQPVAVEALARWTARDGTAVSPETFVRAA 571

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +   ++  +L+   R+I           + + +N+ +  L    L + +++ + + 
Sbjct: 572 EGAGLGAELDALVLDLACREI-----TTAGIDLTVHVNVCASRLGAASLEQSVESALDRY 626

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R+ +  +E+V + +       + RL+ +G+ + LDDFG   S L+ L  +P D +
Sbjct: 627 GLPAERLIVEITETVPVPDLAAGAAAIRRLQDLGVRVALDDFGAGYSSLTVLHALPVDLI 686

Query: 882 KFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + +L TG       A+ RS++ +  ++E  ++A+ I      + +TR GC   Q    
Sbjct: 687 KLDRALTTGVRPDRDAALCRSLVGLCADLEVAVVAEGIETAEQAELVTRAGCTTAQGYRF 746

Query: 941 ASPLGFNSIL 950
             P G  S+ 
Sbjct: 747 GHPAGLASLR 756


>gi|269960040|ref|ZP_06174417.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835339|gb|EEZ89421.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 778

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/474 (24%), Positives = 199/474 (41%), Gaps = 21/474 (4%)

Query: 503 SNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            NS+ +I R      D+  E           A  D+LT + NR  F +  T  L     D
Sbjct: 309 LNSDDEIGRLSSRFFDMYEELNNIYHKTKHLAETDHLTQLANRHRFHELATHELA----D 364

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSG 614
            + +  V+ ID+D +K +ND  G  +GD +L   +R I  + +        P   ARLSG
Sbjct: 365 PSEQLWVVYIDLDNFKYVNDKYGHELGDKLLQVFSRHIKNVCQKFTQQHNSPCFGARLSG 424

Query: 615 NRFGIILISENNSLKIAD-FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           + F I+L +      I D  A  + K I            VTAS+G A +       +++
Sbjct: 425 DEFAILLSTNQKKADIPDMLASELLKPIHNLSQSSTNSFPVTASVGIAQYPRDGADIAKL 484

Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L +A+ AMY AK  G N    +    +     R  I+  L  A    E +LV+ P +   
Sbjct: 485 LSSADAAMYQAKRGGKNQYAYYSAALNIEAQRRSQIERALRKANVEDEFHLVFQPYMNSH 544

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             EI GLE L++W+    G+I   EF+ IAE+  + + I+ ++      +    +     
Sbjct: 545 ANEIEGLEVLLRWEAEGIGSIPPKEFIPIAEQTGLFEKIDRWVFANAMEEYHQLKSIFGK 604

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + IN++S +L    + E +     +    P  I+L  +E+        +   L  L
Sbjct: 605 -DIILSINLSSAELNSLSMAEFIHDKAKQNGVPPHCIELEITETFAADQQGTAL--LDEL 661

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIE 910
            ++G  L +DDFG+  + L+ L   P   +KF+   + T        +++ II +     
Sbjct: 662 AQLGYKLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLLTLMNTDNGHVIKPIIELCHAQN 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF--PLVKN 962
             + A+ I   +  + L+   CD++Q      P+    + +  K     P  ++
Sbjct: 722 KKVTAEGIEHNVMHEWLSSYRCDFMQGYLFGKPMNKEQLNQWWKSANDQPFSRS 775


>gi|88798119|ref|ZP_01113706.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
 gi|88779316|gb|EAR10504.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Reinekea sp. MED297]
          Length = 794

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/459 (21%), Positives = 206/459 (44%), Gaps = 29/459 (6%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++  K+    +   AF D LTG+PNR +  +    +L     + +   +V+ +D+D +K 
Sbjct: 337 LSRLKQHSSDLKRQAFTDTLTGLPNRAALYE----LLAKRTVNPSQPLSVLFLDLDGFKN 392

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF------------PDILARLSGNRFGIILISENN 626
           +ND+ G  +GD +L ++++++  +++              D + RL G+ F ++L++ + 
Sbjct: 393 VNDIYGHDLGDTLLKAVSQKLLSIVRDDPNLPLDSINIRNDAVFRLGGDEFTVVLMANS- 451

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
               A  A  +  +    I + ++ +    SIG + +    I  S +++ A++AMY AK 
Sbjct: 452 --HAALVAQRIIDAFQNGIQIHDKLLYTGTSIGISEFPKDAIDPSLLIQYADMAMYQAKQ 509

Query: 687 RGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G      F          R+ +++ +   VE       + P I+    +++G EAL + 
Sbjct: 510 EGKMRYSIFTSDLAEEEQRRLKLEQLVREGVEFGRFETHFQPKIQASTGKLIGFEALARL 569

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I    F+ +A+E  +++ I   + E+  + +     ++N P +   INIA   
Sbjct: 570 RDVDQQLIPPGIFIPVAQEKGVLEYITYRVCEQACQLL----QESNNPELIASINIAPNQ 625

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D  L   +++++ +   +P +I+   +E  ++ N  +++  L  +R  G    LDDFG
Sbjct: 626 LSDLRLIADIRSIMWRYQITPRQIEFEVTEEELISNFRQTQRDLELIRNFGFKTALDDFG 685

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGE 921
           +  S L  L    FDT+K +   ++       +   +L SI  +A  ++ T++A+ I   
Sbjct: 686 SGYSSLGQLKKFQFDTLKLDRVFVSTDDFDTESSIGVLSSIKELADRLKMTVVAEGIETA 745

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKERFPL 959
             +  +     D IQ    + P+       + L +   L
Sbjct: 746 SQLAFIQSFNIDIIQGYFYSRPISGPQFSARYLNKPNSL 784


>gi|221133587|ref|ZP_03559892.1| GGDEF domain-containing protein [Glaciecola sp. HTCC2999]
          Length = 574

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/439 (24%), Positives = 198/439 (45%), Gaps = 9/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
              +S + +   A  D LTG+ NR  F   L  +    +        ++++D+D +K IN
Sbjct: 139 ALVESNQQLKELAEIDQLTGLENRYMFDRNLKKMFQQHSVVSGG-FALLLLDLDHFKTIN 197

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG +VGD++L +   RI   ++    + RL G+ FG I+ +  N  +I      +  +
Sbjct: 198 DTLGHSVGDELLTAAALRIKNNIRQECKVYRLGGDEFG-IISTLKNKHEIEQLVPRLMNT 256

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  L +  I  T+SIG A +     ++  + K+A++A+Y AK  G +  + +     
Sbjct: 257 LNTPYALTDMNIECTSSIGIAIYPDDASSAESLYKHADMALYIAKDEGRDRCQFYNEDIQ 316

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 I  ++ +  +++N    + Y P+I  +  ++VG EAL++W   +   IS  E +
Sbjct: 317 HRFLRKIYIEDAVKKSLKNKYFSVFYQPVISQLQSKLVGAEALLRWGPEQHFQISIPETI 376

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQAL 817
            +AE+  +I  I   + E + R +  WR          I +N++   L   ++ E    +
Sbjct: 377 KVAEDTGLIIQIGYQVFELVCRQLSLWRSTNTVDDDFAISVNLSPAQLKCVDILERFNRI 436

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +K    P  IKL  +ES+ + + E++  +L  L   G  + LDDFGT  + ++ L   P
Sbjct: 437 ATKYDVLPKHIKLEITESLQLDD-EKTNSILTDLSNAGYKIVLDDFGTGYASIAQLCN-P 494

Query: 878 -FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            F T+K + S++         +  ++  M   +   IIA+ I  +  +     +  D IQ
Sbjct: 495 IFSTIKIDKSIIDTIATDDEKLFYAVSKMLNTLNLPIIAEGIETQSQLDACFGVNIDMIQ 554

Query: 937 DSHVASPLGFNSIL-KLLK 954
               + P        + L 
Sbjct: 555 GYFYSKPTTAEVFEQRWLT 573


>gi|325678924|ref|ZP_08158522.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324109428|gb|EGC03646.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 692

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/578 (17%), Positives = 218/578 (37%), Gaps = 31/578 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-LGLA--SGSMHGP 448
           A     + I    E+  +    + D+ + +D+  D +  T  I    L       +  G 
Sbjct: 117 AQKKLMRQITEQQEKLHMIAENTDDVYYQYDVKHDLMHLTVSITRFRLDYDNCLENFLGR 176

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
                 ++H +D   +    +  +  +  +   EFR +A D+ + W        ++ NG+
Sbjct: 177 RAA-EEFMHPDDVKAYFDEWEKALK-KPTKGTMEFRTKAYDDDYCWYSDAYISFADENGE 234

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQ-------DNLTGIPNRQSFLDRLTTILDLSATD 561
           ++   G   +I + K        ++         D LTG+ NR+ F  +   +L     +
Sbjct: 235 VMEVFGRLANIQKLKTLTSQADSDSEYIKYLLQSDQLTGLYNRKGFTQQAGNLLSR--RE 292

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +     ++  DI+ +  +N+  G   G+ +L      +        +  R+  + F  + 
Sbjct: 293 EGYIYALVYSDINDFSYVNENFGYETGNTMLRDFAECLKAGST-YVMGCRIYSDFFITLC 351

Query: 622 ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            +++ +      ++ + +    + +  P         +  S G       ++  +  + N
Sbjct: 352 RAKSRAELIKSVEVENTSFTALQKLKFP------SGDIRISCGMYILPDGEVELNTAIDN 405

Query: 677 AELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A LA    KH        +  R+   +     I  +L  A+EN ++ +   P   L    
Sbjct: 406 ANLARRSVKHSSSILCGIYSQRMRMQKLYEQSICNELHAALENRQIEMFLQPKFHLEKRV 465

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G EAL +W +P        EF+ + E++  I  ++ F+ E + R +  W+   +   +
Sbjct: 466 IIGAEALARWRNPNGTYKMPFEFIPVLEKVGYIDELDFFIYEEVLRTLEKWKRD-DRVLL 524

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N +   +   +  E +    ++     S +++  +ES   G+ +    ++ RLR  
Sbjct: 525 PISVNFSQHHITQPKFVENLIDTANRFDVDKSFVEIEITESCFSGDTQALFSVMERLRNE 584

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G  +++DDFG   S LS L   P D VK + S +      +     + ++  +       
Sbjct: 585 GFKVSIDDFGIGYSTLSVLMNAPVDIVKIDKSFIDNIERNKNDRDFVANMCSLIDTANKD 644

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           II + +  +     L + G    Q       +  +   
Sbjct: 645 IIFEGVETDAQAAILCQSGYTKAQGWLFDKAMPLSDFE 682


>gi|313679506|ref|YP_004057245.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf
           sensor(s) [Oceanithermus profundus DSM 14977]
 gi|313152221|gb|ADR36072.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oceanithermus profundus DSM 14977]
          Length = 872

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/456 (23%), Positives = 211/456 (46%), Gaps = 26/456 (5%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +LRY  + +D+             A+ D+LTG+PNR++    L+ +L  +     +  
Sbjct: 429 GQVLRYRKVMDDL----------EFKAYHDDLTGLPNRRALYRHLSYLLSNAE----VSG 474

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V  +D+  + ++ND  G   GD +L  +  R+  L       AR  G+ F ++L+ ++ 
Sbjct: 475 AVAFLDLVDFGEVNDTWGHETGDRLLRYVGSRLQALAPVGVWAARWGGDEFVVVLVGDDP 534

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +        + ++    L E  I ++A  G   + +    +  +L+ A++A+  AK 
Sbjct: 535 RALLEQA----LEHLSASTPLGEHRIRLSARAGMVRFRTFGSDAETLLRRADMALAVAKE 590

Query: 687 RGGNHVESFRV-SSFRSDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEALI 742
                 E         ++R    E L  A+E+ E   LYL + P++      +V  EAL+
Sbjct: 591 SKREVYEYEAGLQEKAAERRARVEALRRAMEDGEGGELYLHFQPVVNPEGRYVVAAEALL 650

Query: 743 QWDHP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           +W  P     IS +EF+ +AE+  +   ++  +L     + + W ++       + +N++
Sbjct: 651 RWRDPRTGEQISPAEFVPLAEQYGLAVKLDARVLRMALDEGLRWLERWGEAAPRLSVNVS 710

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + +LD      ++ L+  T Y P R+ L  +E  ++ + E +R  L  LR++G+ + +D
Sbjct: 711 PESILDPAFTASLEELLQSTAYPPERLTLEITER-IIADVEHTRGPLTHLRELGVRIAVD 769

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL Y+  D +K + +         +  A+LRSI  +  N+   I  + + 
Sbjct: 770 DFGTGYSSLAYLAYLAVDILKVDRAFTRDIGKNPRTEAVLRSIFALGGNLGLQITIEGVE 829

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L R  CD++Q   +A P+   +  + L +
Sbjct: 830 DVRQLEWLRRTECDWVQGFGIARPMQAQAFTRWLDD 865



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D     +     I ++LG  +    G    W   +H +DR      L          ++ 
Sbjct: 47  DEQGTTLFAAGAIESMLGYTAAEWVGRPDAWYASLHPDDRAKVMQALARLAPG--ASVEI 104

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-DNL 538
            +R+R     + W+   +     + G    Y+G+  D+T +K+  +  + ++   D L
Sbjct: 105 SYRMRHKAGDWRWIRDTVTLFEAAPGR-RYYLGVMTDVTHEKELEQATMESSVFLDEL 161



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 89/309 (28%), Gaps = 25/309 (8%)

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII-------- 327
            R                  L  + +               +I     Y           
Sbjct: 17  RRLLPPFHLTPGEWAILSRRLPVVVYQALADEQGTTLFAAGAIESMLGYTAAEWVGRPDA 76

Query: 328 -YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP-ALVGGLVLIVILIGFT 385
            Y  +   +RA ++     L     + +   +  +  +       +              
Sbjct: 77  WYASLHPDDRAKVMQALARLAPGASVEISYRMRHKAGDWRWIRDTVTLFEAAPGRRYYLG 136

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGS 444
           V+  V       Q            +     +++  +    R+   +P+   +LGL +  
Sbjct: 137 VMTDVTHEKELEQATMESSVFLDELLRSGPWVLYRLEGPTQRIGYLSPNARNVLGLDAEE 196

Query: 445 MHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           + G    + +  +H  DR  FR            + +  FR+     ++HW+ +  R   
Sbjct: 197 ILGHTPEHLVERVHPEDRGLFRRHFALLRQAGGDQTRVRFRL--ESGEYHWIALHGRR-- 252

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + GD   Y+G   D+ E+ +  +    NA +        +++  D  +   + +  +  
Sbjct: 253 -AAGDPEVYLGYLMDVEEKARHEQWSRMNAER--------QRALYDLGSQAWETTQPERF 303

Query: 564 LRPTVMVID 572
               V V+D
Sbjct: 304 FEKVVEVLD 312


>gi|91974788|ref|YP_567447.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5]
 gi|91681244|gb|ABE37546.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB5]
          Length = 583

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/541 (20%), Positives = 223/541 (41%), Gaps = 16/541 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND--RDNFRTI 467
            +   G   + WD+  D +  T   + +              +   +  +   R +    
Sbjct: 25  ILAALGQAAFVWDLATDAIIWTGRASDLFQDIPAETLSTGAGYASLLEPSRAIRADALLN 84

Query: 468 LDSFVGYRRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             +  G      + E+ VRAA      W+         ++G      GI     E+    
Sbjct: 85  GAAAAGENCVPYRIEYGVRAATSAPIIWIEESGFWYPGADGRPASVEGIVRINNERHARE 144

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +L  +  D LTG  NR   +  L   ++ +A         M+I +D   +IND  G  
Sbjct: 145 QQLLQLSQHDPLTGELNRTYLVAALAESIEEAAR-FRSSLCFMLIGLDHLARINDSFGFD 203

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           V D+++ ++ +RI   L+  D L R SGN+FG+IL +             +       + 
Sbjct: 204 VADELICTIAQRIRARLRSGDQLGRFSGNKFGLILKNCTVDDAQVAAERFLIAVRDEIVP 263

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                ++VTASIG  S      T+ E +  A+ A+  AKHR       +R +  R  +  
Sbjct: 264 TRSGPVSVTASIGAVSSPRHARTAEEAINRAQEALSAAKHRRCGAFSMWRPNVERDAQRR 323

Query: 707 I----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +     +++  A+    + L Y P++ +        E L++        + + + + +AE
Sbjct: 324 VNIRVTDEIVTALNERRIVLAYEPVVDVATRAPAFHECLVRMMQDDGQVLLAPDIVPVAE 383

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            L +I+ ++  +LE +  ++ +       P + + +NI+    +D +   G+++L+    
Sbjct: 384 RLGLIRLVDHRVLELVVAELAA------SPQMTLSLNISPDTTMDADWWAGIESLMLAHP 437

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+ +  +E+V + + +  R  + RL+K G  + +DDFG   +    L  +  D VK
Sbjct: 438 GVAERLIVEITETVAIQDIDEVRGFVTRLKKFGSKIAIDDFGAGYTSFRNLRNLGVDIVK 497

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +G+ +     +    A ++++I +A+ +    +A+ +  E     L   GCDYIQ   +
Sbjct: 498 IDGAFVQNIARSVDDRAFVQTLIDLARRLGIKTVAEWVQDEESALLLRDWGCDYIQGRLI 557

Query: 941 A 941
            
Sbjct: 558 G 558


>gi|258510252|ref|YP_003183686.1| diguanylate cyclase/phosphodiesterase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476978|gb|ACV57297.1| diguanylate cyclase/phosphodiesterase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 540

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 213/450 (47%), Gaps = 11/450 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y  +  D+ +++   + +   +  D LTG+ NR  F+D     +  +  D + R  ++ +
Sbjct: 93  YRELFLDLRQKRDLRKRLAHESSHDALTGVLNRAYFMDYFEYAVRAAERDAD-RLALLYL 151

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D+++ +N   G   GDDVL  + R      +  D+LARL G+ F +++      L + 
Sbjct: 152 DLDRFEALNATFGYRAGDDVLRRVARMWEAEKRSVDVLARLGGDEFAVLMAHAGPELDVL 211

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +  S    +  L     + A +G A +     T   +L+ AELA+  AK RG + 
Sbjct: 212 AVANRLMASCRQ-VETLSNRFDLGACVGIAFFPEDGTTPDVLLRKAELAVQRAKRRGRHQ 270

Query: 692 VESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +R S          ++ +L  A+   E+Y+VY PI+      +V  EAL++W H +W
Sbjct: 271 VCFYRESLTAGMSRADRLRNELPRAISRGEMYVVYQPIVDAKTGRLVSAEALVRWRHREW 330

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDN 808
           G +S  EF++IAEE  ++ AI   ++E     + +WR       + + +NI+++D  L  
Sbjct: 331 GELSPGEFLVIAEEARLMPAITRRVMEEAVSSLAAWRRSGF--SLTLSLNISAQDCQLYA 388

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L + +  L+++    P  +++  +E  +M +   +  L+  L + G  + LDDFGT  +
Sbjct: 389 DLVDDLSRLVAEHGVKPQDVEIELTEQSLMEH--AAEDLVRALCQRGFRIALDDFGTGYA 446

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL       +K + S +      E    ++R+++ +A+ +   + A+ +        
Sbjct: 447 SLAYLRRFEVTRIKIDRSYVARLFTNEYYKRLIRAVMALARELGLEVTAEGVETAEQEAF 506

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L  +G + +Q      P+   ++ ++    
Sbjct: 507 LRAIGVNRLQGFRYGRPVSAPALQEVAAGH 536


>gi|163814705|ref|ZP_02206094.1| hypothetical protein COPEUT_00856 [Coprococcus eutactus ATCC 27759]
 gi|158450340|gb|EDP27335.1| hypothetical protein COPEUT_00856 [Coprococcus eutactus ATCC 27759]
          Length = 1018

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 214/558 (38%), Gaps = 36/558 (6%)

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            +LA     + ++  D+  +    +       GL    ++   + W   IH +DR  F   
Sbjct: 485  ALAATTLRNYIFMDDLDTNVTKWSASAVDYFGLPGQYIYDTQKVWEKLIHPDDRAIFEQD 544

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +      R+     E+R++    ++     R       NGD   ++G   +         
Sbjct: 545  ITEVFAGRKKYHDVEYRMKNKKGEYVVCTCRGFITKKENGDPEFFVGTVIN--------- 595

Query: 528  GILCNAFQ------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
                          D +T + N+  +   ++  L    T      +++ I I  +  IN 
Sbjct: 596  -------HGVIDGVDPVTNLHNQHEYTKYISIHLRNKQT-----MSILAIGISMFNSINM 643

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            + G A G+ VL     ++  ++    ++ RL G +F  I  +     ++ +    ++   
Sbjct: 644  MYGYAYGNAVLKDFATKLKNVVGGKGLVFRLDGAKFA-ICSNVYTKQELKEVYRHVQNLA 702

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSS 699
               + L    I +    G   +         +  + E A+  +K  H G     +  +  
Sbjct: 703  LDNVGLNGTSIPLKLYGGGLIYDHVGADEDVIKSSVEYALERSKEDHHGELVFFNEEIKD 762

Query: 700  FRSDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                R+ +   +   V N+    ++ Y PI       IVG+EAL++W H ++G +    F
Sbjct: 763  NDRMRLQLYSTIHKCVANNMEGFFMCYQPIANSETGHIVGMEALLRWKHKEFGVVPPGIF 822

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            +   E       +  +++E+   D +  R     P   + +NI++  L ++   + +  +
Sbjct: 823  IPWLEMEPCFFELGNWIIEQALTDGMEIRR--IRPDFVVNVNISATQLENHGFRQAVVDI 880

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + KT + P  + +  +E     +    +  L   RK+GI + +DDFGT  + L+ L  +P
Sbjct: 881  LKKTKFPPEYLCIELTERCKNMDIAFLKNELEYFRKLGIKIAIDDFGTGNATLNLLTELP 940

Query: 878  FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + S + G  E      ++++++  A  +      + +  +     L R G  Y 
Sbjct: 941  IDELKVDMSFVRGIQESKPNQVLVQAVVSCAHELGYKSCIEGVEDKTLFDYLHRYGSTYY 1000

Query: 936  QDSHVASPLGFNSILKLL 953
            Q  H + P+      KLL
Sbjct: 1001 QGYHFSRPVCLEDFKKLL 1018



 Score =  116 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 88/243 (36%), Gaps = 27/243 (11%)

Query: 456 IHINDRDNFRTILDSFVGYR---RGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILR 511
           I  +D D  R  L      +    G  ++  R +   D  + W++  + P ++   D   
Sbjct: 215 IFPDDVDRVRKCLSPEFLIKYFANGHDRFTIRYKRKMDMVYRWVMTEVIPTADYRDDNKV 274

Query: 512 YIGIANDITEQKKSLEGILCN----AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +     DI E+              +++D LT + NR +F          +   D     
Sbjct: 275 FYLYTRDIHEEYSESIEKQELLEFYSYKDALTHLGNRNAFNILCDAY---ADRKDKRSVG 331

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +  D++K K +ND  G   GD  L  +++ + +         R+SG+ F +I++     
Sbjct: 332 FVFNDVNKLKYVNDHYGHKEGDLYLQRVSQMLAQHFGENA-CYRISGDEFVVIIMDITEQ 390

Query: 628 ---LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                IA +   + +    P+               A W +   +  +++  AE  MY  
Sbjct: 391 SFNSMIARYKEVIDEQEEAPVAFG------------AVWKAEADSIDKIMNEAERLMYED 438

Query: 685 KHR 687
           K R
Sbjct: 439 KKR 441


>gi|302131918|ref|ZP_07257908.1| GGDEF [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 493

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 208/426 (48%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L      ++ R  V +ID+DK+K IND  G AVGD  
Sbjct: 63  LARHDPLSGLLNRRVFHEQLVARL----QQESTRTAVFLIDLDKFKLINDTHGHAVGDAA 118

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + +        +ARL G+ FG+ +  + N  ++A  A  +   IA+   +L R
Sbjct: 119 ICAVAESLRDATAGWQASVARLGGDEFGLAVSGDFNQFELATLAENVLAKIALSSAVLPR 178

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            I ++A++G A        +  +L+ A+ AMY  KH G      + VS  R  R+     
Sbjct: 179 VI-LSATLGVAISPLDGSDAEVLLQRADSAMYRGKHSGRATFHFYEVSFEREQRLQEVFA 237

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 238 QELRHAIEEKHIQPFYQPIVSLPEQRLAGFELLARWLHPERGIILPMDFIPVAEQLGLIK 297

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  E ++ L  +  +  +R+
Sbjct: 298 QLTESLLLQAFDHARDWPS-----DFTLSINVTSLMIESLDFPEWLEQLACEGRFPLNRL 352

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L  LR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 353 EVEVTENTLVANVDSARLNLECLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 412

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+   K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 413 DTSLDNQNEMVKAILAQGKSLRMKITAEGVEHEDLAHWLAAHECDFAQGYLFGRPLPLAQ 472

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 473 VTALLA 478


>gi|115522917|ref|YP_779828.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
 gi|115516864|gb|ABJ04848.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodopseudomonas palustris BisA53]
          Length = 609

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/552 (22%), Positives = 238/552 (43%), Gaps = 18/552 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + E     V      V   +     +      A    + + ++     +    +     +
Sbjct: 38  ELEILRDIVAALPGAVTVQNDRGQFLLANEAAAAQFHIPAATLMRLAPD--QTLPTEALN 95

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R+     +G  R  +  E  +     Q   +      +    G  L        IT+Q
Sbjct: 96  QRRSTGRDLLGGGRNTVCEET-ISGPLGQR--VFRTAHRVVRIAGTDLLLSNSIE-ITDQ 151

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  + +   A+ D LTG+PNR     R   +L      +     +  +D+D +K IND 
Sbjct: 152 KEIEQALFERAYFDELTGLPNRTVVEARANGLL-----QNETGFALAFLDVDNFKHINDY 206

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G AVGD +LV  ++RIG  L+  D L+R+SG+ F ++L    +S ++AD+   +++ + 
Sbjct: 207 YGHAVGDALLVEFSKRIGHELRSTDTLSRISGDEFLMLLSPIVSSAEVADYIDFLQQRLR 266

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSF 700
            P  +   E+  +ASIG + +     +   +  NA++AMY  K+   GG  +    +   
Sbjct: 267 APFYIDGSEVFASASIGVSLYPEHGRSFETLRLNADVAMYQVKNATKGGFAIFDIAMERE 326

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+ I++ L LA+ +      + P + +  +++ G+EAL++    +    +   F+ +
Sbjct: 327 AQERMQIEQSLRLAILDKRFCCAFQPKVDIRTQQVHGIEALVRLRDDRGIIQAPGTFVDL 386

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A EL +I  +   +L+ I   I    D    P + I +N+A+K   +    +   A +  
Sbjct: 387 AVELGLIDDLTHLVLDEIMNSI-DLIDATFGPEVSISVNVAAKQAGNPAFMQSFAAALEA 445

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P+R  +  +E   +        +L  LRKIG+ +++DDFG   S LS L  I  D 
Sbjct: 446 TGC-PTRFVVEVTEDAFVAKSHFQDEILPMLRKIGVGISIDDFGIGYSSLSALADITADE 504

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQD 937
           +K + S +T      +   ILR+I  ++  +  T+IA+ +    ++  L       Y Q 
Sbjct: 505 IKIDRSFITDIHKRPRSQGILRAIESLSDALGMTVIAEGLETFEELAYLQAATRIRYAQG 564

Query: 938 SHVASPLGFNSI 949
            + + P+    +
Sbjct: 565 YYFSKPIFLEDM 576


>gi|323136825|ref|ZP_08071906.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
 gi|322398142|gb|EFY00663.1| diguanylate cyclase/phosphodiesterase [Methylocystis sp. ATCC
           49242]
          Length = 601

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/563 (18%), Positives = 234/563 (41%), Gaps = 24/563 (4%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +   G++V+ WDI  DR+    ++A  LG  +    G    +   I      +   +
Sbjct: 43  RAILSSIGEVVYHWDIATDRLDWGANLAEALGPIAACDLGTGLAFGERIATESVASRYDV 102

Query: 468 LDSFVGYRRGR---LQYEFRV----RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +        G     Q  + +         Q  W+    R  ++S+G   R  G+   +T
Sbjct: 103 VMQSEAKDSGEGVAYQVVYALAPPREHGPAQPVWVEDTGRWFADSDGRPARAHGVVRVVT 162

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +    +   +  D LTG+ NR    + +   L  S  +      VM++ ++    +N
Sbjct: 163 ERHEMERKLALGSQIDPLTGVLNRAQLSEHVQRFLTQSERNRKP-FAVMLVALENLFALN 221

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   GD+V+  L RR+   ++  DI+AR +GN+F ++L + +    ++     +   
Sbjct: 222 RTYGYDAGDEVIAGLARRLRANVRVCDIVARHAGNKFALVLDNCDTEQTLSVARRLLDLV 281

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---- 696
              P       I  T  IG             + ++AE A+  A+   G    ++     
Sbjct: 282 KETPFETSAGAIPATIRIGGVIGPREGRAPQILFQHAEEALDVARQGNGKRFVAYTASLA 341

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               R   + + + +  A+ +  + L + PI+   + ++   EAL++        ++ + 
Sbjct: 342 REDARLRALQVADSIVSALNDRRVELAFQPIVHAANGKVAFHEALLRVRLADGSMVAPAT 401

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            + +AE+  +++ ++  ++E     + +       P + + +N +   +LD E  + + +
Sbjct: 402 ILPVAEKAGLVRLLDQRVMELALERLAA------EPDLRVSVNCSMASILDPEWPDRLAS 455

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I+       R+ +  +E+ ++ + E +R L+   +++G+ + +DDFG   +    L  +
Sbjct: 456 AITINPSVAQRLIVEITETSMIEDFETTRNLIASCKRLGVKVAMDDFGAGHTSFRNLRDL 515

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            FD VK +G+ +   +        +R++I +A+++E   +A+ +  E   + L   G DY
Sbjct: 516 AFDLVKIDGAFVQNISTSADDRFFVRTLIDLARHLELETVAEWVEDEETAEILREWGVDY 575

Query: 935 IQDSHV----ASPLGFNSILKLL 953
            Q ++     + P       + +
Sbjct: 576 FQGAYYGRAESRPAPEEGARRAI 598


>gi|194364207|ref|YP_002026817.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Stenotrophomonas maltophilia R551-3]
 gi|194347011|gb|ACF50134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Stenotrophomonas maltophilia R551-3]
          Length = 1020

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/657 (17%), Positives = 242/657 (36%), Gaps = 29/657 (4%)

Query: 308  ASIARITLASIVLYYTYFIIYHGMKGYERAVL---LIPAWILIFIWFIGLWMAITKRLDN 364
            + +AR               +  +   + A L      A+    +      + +      
Sbjct: 381  SPLAREIFGVQTDALPVADFFARVHRDDAARLQHAFDQAFAGSAVLDQVFRLVLPGGEVR 440

Query: 365  DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
             +        +      +    +  +       + +     R  L    +    W +D  
Sbjct: 441  WVGARGQRVEVADSERRM-IGALTDLSERYQAREQMGEAERRFRLLFDRNPAPFWVFDPD 499

Query: 425  R-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                +          G +         + L        D  +  +               
Sbjct: 500  TLRFIEVNDAAVRQYGYSREEFL--AMSILDIRPREGWDEVKGAIAKARVGELQ--DATV 555

Query: 484  RV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R+ R  D     +   +  + + +G     + +A D++E+      +   A  +  TG+ 
Sbjct: 556  RLHRRKDGSVFEVRAHLSRL-DFDGQPACLV-LAEDVSERLAYERDLAYQARHNPATGLL 613

Query: 543  NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            N ++  ++L           +   T+  + +   + + D LG  +GD VL S+  R+G L
Sbjct: 614  NVRALTEQLDE--------HDAGYTIAFVQLRGLQLVADTLGREIGDAVLQSMATRLGGL 665

Query: 603  LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                  LA      F   + +  +  ++ D    + + ++ P+   +        IG A+
Sbjct: 666  GARCGTLAFQPAEDFVFAIGAGQDVQRVLD---DLLQIVSAPMRGKDSLHQFEPRIGVAT 722

Query: 663  W-TSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLAVENSEL 720
                   ++ +++  A  A + A+  G         V++  +DR+ +   +  A++N E 
Sbjct: 723  HVAGDGHSAEQVIGMAAQAAHAARAEGNVVVWFDASVTTRLADRLRLAGRIHAAIDN-EF 781

Query: 721  YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
             L + PI    D     LEAL++W       I  +EF+ + E+  +I A+  +++   A+
Sbjct: 782  QLYFQPIRHAGDGSPAALEALLRWPQADGSFIPPNEFIPLCEDTGLILALGRWVIRAAAK 841

Query: 781  DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                  D      + I +N+++    +++L             +   + +  +ES +M  
Sbjct: 842  AQRRLVDAGWGE-LPIAVNVSAVQFFNSDLVTEFTRAQQDFGLARGALHVELTESSLMRK 900

Query: 841  PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            P ++   + RL + GIS++LDDFGT  S +SYL ++P D +K + S +    +  +  +I
Sbjct: 901  PAQAMQTMQRLHEQGISVSLDDFGTGYSSMSYLQHLPLDILKIDRSFVADVETNPRNASI 960

Query: 899  LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             R+++ +  ++  TIIA+ +     +  L   GCD +Q   +  P     I+  L E
Sbjct: 961  CRALLSLGHSMGLTIIAEGVETPGQLDWLAAHGCDQVQGYLLGRPAPLEQIIDALDE 1017


>gi|150395697|ref|YP_001326164.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150027212|gb|ABR59329.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 742

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/462 (25%), Positives = 218/462 (47%), Gaps = 15/462 (3%)

Query: 503 SNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
               G+I R  G   ++  Q  +SL+ +  +++ D LTGI NR  F       +  +   
Sbjct: 252 VGGAGEIGRLTGNIRELHRQSVQSLQLVQRSSWTDALTGINNRARFNILAAQAVRETVAS 311

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL--------KFPDILARLS 613
            + + +++ IDID +K +ND  G  VGD++L +L  RI   +        + P ILARLS
Sbjct: 312 GD-KCSLLFIDIDNFKFVNDKHGHDVGDELLKTLAARIAHDVGAITGGRGQEPAILARLS 370

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L S+     + +   A+    +    L  +   VTASIG A       + +E+
Sbjct: 371 GDEFAVLLRSQPGDGVVRETCAAILALFSDGFELSGKRYPVTASIGVAVCPDDASSVAEL 430

Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           + N++ AMY AK  G N    F    +  R+ +  I+++L     + + +LVY PI+   
Sbjct: 431 ISNSDAAMYQAKSAGKNRSARFSRALNDKRTRQRQIQDELRSLDPDQQFHLVYMPIVD-A 489

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             ++ G EAL++W  P  GN++  EF+ IAE   +   I+ +++++   D    +     
Sbjct: 490 GGKVNGCEALLRWYSPVLGNVTPDEFVPIAESSGLFTKIDWWVVDKAMSDCRQLKALFG- 548

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P   + INI+S +L    + E +   +++       I +  +E+  +   ++ RL +  L
Sbjct: 549 PDTVLAINISSAELHSKAISEHLSDCLARHNLEAQSIDIELTETFAVQISDQLRLRMDEL 608

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910
           R  G  L++DDFG   + +  +     DT+K +  L++     + +A+LR++I +     
Sbjct: 609 RSKGFRLSIDDFGAGYTSVQQIIGYAADTIKLDRELVSNLNASESLAVLRAVIALCHAKG 668

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             ++ + +     +  L   GCD  Q   ++ PL    +   
Sbjct: 669 MAVVGEGVDTPEKLAMLKAAGCDRFQGYLISKPLPLAELAIW 710


>gi|169829521|ref|YP_001699679.1| signaling protein [Lysinibacillus sphaericus C3-41]
 gi|168994009|gb|ACA41549.1| Signaling protein [Lysinibacillus sphaericus C3-41]
          Length = 701

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/434 (25%), Positives = 211/434 (48%), Gaps = 10/434 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + ++S   +   A+ D++T +PN       L   L     ++ L+  ++ I+ID++  I 
Sbjct: 251 DLEQSQRELQFQAYHDDITLLPN----EHLLLKTLKEKLHENELQKAIIAIEIDRFAAIR 306

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             +GI+  + ++  +  RI  +L       +L   +F I +       ++  F + ++ +
Sbjct: 307 SSIGISHSNKMMKLVADRIQTILPPHYFATKLQEGQFVIYIHHVKTVEELLQFCLNLKSA 366

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSS 699
           +  P+ +    +    ++G A     K +  E+L +A+LAM  ++            +S 
Sbjct: 367 MKKPLQVQLFSLNGNLNMGIAL-QEEKWSGEELLMHAQLAMRESRQIPQRFLFYKPYMSK 425

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +DR+++++DL  A+ N+E YL Y P + L    I  +EAL++W HP  G +S   F+ 
Sbjct: 426 GIADRILLEQDLHNALANNEFYLDYQPQVNLKSGAIESVEALVRWRHPSRGFVSPELFIP 485

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAEE  +I  +  ++LE   +    W +Q   PPI + +N++   L   +L E +  ++ 
Sbjct: 486 IAEECGLIIPLGKWILETACQQAKQWEEQGL-PPIKVAVNLSLGQLFQQDLVEMVAGILQ 544

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           ++      ++L  +ES+ M N ++   LL  L+ +GI + +DDFGT  S LSYL   P D
Sbjct: 545 RSKLDAHYLQLEITESMTM-NIDQMTQLLHELKALGIQIAVDDFGTGYSSLSYLKDFPID 603

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +          A++  II MAK++   ++A+ I     +  L   GCDYIQ 
Sbjct: 604 CLKIDRTFIRNVPHNPNDEALVSMIISMAKHLRLKVVAEGIEEVEQLSFLMEGGCDYIQG 663

Query: 938 SHVASPLGFNSILK 951
              + P+    I +
Sbjct: 664 YLFSKPISPQQISE 677


>gi|315125450|ref|YP_004067453.1| HAMP domain/GGDEF domain/EAL domain-containing protein
           [Pseudoalteromonas sp. SM9913]
 gi|315013963|gb|ADT67301.1| HAMP domain/GGDEF domain/EAL domain-containing protein
           [Pseudoalteromonas sp. SM9913]
          Length = 771

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 206/449 (45%), Gaps = 17/449 (3%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + NDI ++    + I   A  D LTG  NR + LD L   L      ++ R T++ IDI 
Sbjct: 331 MGNDINKR---EQQISFQAHHDTLTGFYNRSAMLDLLAKRL-----TNDARYTLVAIDIK 382

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADF 633
             + IND LG  VGD  L+++  RI +         AR+ G+ F  +        ++   
Sbjct: 383 GLRHINDKLGPQVGDGCLIAVANRIRQFSDELGGFHARIGGDEFLTVYP-CAEIEQVKCA 441

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + K + +   +   +I++  + G   +      + ++++   +A+  A     +   
Sbjct: 442 VADLLKQLQLAYKVKNLKISLRFNAGIVQYPEQGTKADDLMRRVLIAVDAATTSQQSLHY 501

Query: 694 SFRVSSFRS-DRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                     DR+++ ++L  A   +N +L++ Y P + +  ++I  +E+LI+W     G
Sbjct: 502 YQDGEDEAHLDRLIMLDELKQAIDDDNGQLFMTYQPKLNIKSQKIDKVESLIRWQRKDGG 561

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+ +AE+  +I  +  +++E +   I  W  +     +   IN++++D+  +  
Sbjct: 562 WVSPEVFIDLAEQSGLIVELTAWVVETVIAQIADWSKK--DIHLQAAINVSAQDIAHSGF 619

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A ++K   +PS + +  +E  ++ N  +    L  L+ IG+ ++LDD+G   + L
Sbjct: 620 HASLVATLNKYQVNPSSVTIELTERDMIENEAQGIKALEDLKTIGVKISLDDYGVGQTSL 679

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P D +K +   +    E  K   I+RS I +   +  +++A+ +     +  L 
Sbjct: 680 GRLKMLPIDELKLDKCFILTLHESQKDQYIVRSSITLGHQLGFSVVAEGVETAESLSMLH 739

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
            M CD+ Q  +++ PL    + + L+E  
Sbjct: 740 EMQCDHAQGYYLSRPLKAQQLEQWLEEYQ 768


>gi|291568178|dbj|BAI90450.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 792

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 198/380 (52%), Gaps = 8/380 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+PNR  FLDR    +  S  + ++   V+ I+ID ++ IND LG   GD +L+
Sbjct: 414 LHDSLTGLPNRSLFLDRTQQAIAKSQRNKSI-CGVLFINIDNFRLINDSLGDLAGDQLLL 472

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L  R+   ++  D +ARL  + F I+L +  +       A  ++K +  P  L   E+ 
Sbjct: 473 QLVERLNNSVRLGDTIARLGADEFAILLRNLQSVNNATIVAERIQKDLTYPFILNGHEVF 532

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
            T SIG A   +++  + ++L+N   AM  AK       + F  +      DR+ ++ DL
Sbjct: 533 KTVSIGIALADTAETRAEDLLRNGNTAMLRAKSLKNIRYQVFERTMQVGGLDRLQLETDL 592

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            LAV   E  + Y P+I L   EIVG EAL++W HP+ G ++   F+ +A+E  +I  I 
Sbjct: 593 RLAVTRGEFVMYYQPVISLTTREIVGFEALVRWQHPRQGLVTPERFLKVAKETGLIIPIG 652

Query: 772 LFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            + ++     +  W+        I + +N++ +  +  +L   +Q +I  +   PS ++L
Sbjct: 653 RWAMQEACHQLAIWQQSLKSDCQIIVGVNLSGRQFIHPDLVTEIQGIIQDSGIDPSGLRL 712

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV+M + E +  LL +L+ + I L++DDFGT  S L YL   P D +K + S +  
Sbjct: 713 EITESVIMDDVEATIRLLHQLKNLQIKLSIDDFGTGFSSLGYLPRFPVDVLKIDRSFIAH 772

Query: 891 STE----KRIAILRSIIPMA 906
             E    + +AI+R+I+ +A
Sbjct: 773 IGEATEVENLAIVRTILMLA 792


>gi|146337636|ref|YP_001202684.1| hypothetical protein BRADO0501 [Bradyrhizobium sp. ORS278]
 gi|146190442|emb|CAL74441.1| conserved hypothetical protein with PAS,GGDEF and EAL domains
           [Bradyrhizobium sp. ORS278]
          Length = 592

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 209/448 (46%), Gaps = 9/448 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           GD    I  + DITEQK+  + +   A+ D LTG+P R+    R   ++     +   R 
Sbjct: 115 GDRQLVISSSADITEQKEFEDQLFRAAYYDELTGLPLRRVAQHRADNLVRRGRVEG--RF 172

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +  +D+D +K IND  G A GD +LV   +RI   L+  D+L+R+SG+ F ++L     
Sbjct: 173 ALAFLDLDNFKYINDYYGHATGDALLVEFAKRISRDLRDTDLLSRISGDEFLLLLHPIER 232

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           + +IA+F  A+   ++ P  +   E+  +AS+G + +     +   + +NA+LAMY  K+
Sbjct: 233 AEEIAEFLHALLDRLSAPFFIGGAEVFASASVGVSLYPEHGASYDVLRQNADLAMYRVKN 292

Query: 687 RGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G   +  F  +        +  ++ L LA+        +   + +  EEI G+EAL++ 
Sbjct: 293 SGKGTLAFFSSAMEHEALARMKVEQSLRLAILEKRFCCAFQAKVDIRTEEIKGIEALVRL 352

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
              +    +   F+ +A EL +I  +   +L+ I + I         P   I IN+A+K 
Sbjct: 353 RDNEDVIQAPGAFINLAVELGLIDELTHLVLDEIVKSIDLINATFG-PDATISINVAAKQ 411

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             + E  +     +  T + P R  +  +E   +        ++  LR IG+ +++DDFG
Sbjct: 412 ASNPEFMQPFARALEATGF-PKRFMVEVTEDAFVTRSHFQDEIVPLLRGIGVGISIDDFG 470

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S LS L  I  D +K + S +T      +   ILR+I  +++ +  T+IA+ I    
Sbjct: 471 IGYSSLSALADITADEIKIDRSFITDIHKRPRSQGILRAIESLSEALGMTVIAEGIESFE 530

Query: 923 DIKELTRM-GCDYIQDSHVASPLGFNSI 949
           ++  L       Y Q  + + P+    +
Sbjct: 531 ELAYLQAATKIRYAQGYYFSRPIFLEEL 558


>gi|310657439|ref|YP_003935160.1| hypothetical protein CLOST_0125 [Clostridium sticklandii DSM 519]
 gi|308824217|emb|CBH20255.1| exported protein of unknown function [Clostridium sticklandii]
          Length = 775

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 213/436 (48%), Gaps = 15/436 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRL----TTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            I    ++D +TG+ N  SF+  L      ++           +     ID +K+IN + 
Sbjct: 345 HIKNLTYRDPVTGLYNFNSFMLELPYKMEGLIGEYGIASISIIS-----IDDFKRINSIS 399

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+ VL +L++RI       +++AR  G+   + L  E +   + +  I + +   +
Sbjct: 400 GYQTGNKVLETLSKRILNFKMPSEMVARYFGDEIIVFL-WEADYESLENRIIKLWQLCGL 458

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI++ +    +  SIG +  +  K +  E++  A +A    K+ GGN  E +  +  R  
Sbjct: 459 PIDMNQHRFRLKTSIGTSIMSMEKGSYDEVIHEATMAKLKVKNSGGNGYEFYNEAISRMI 518

Query: 704 RVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +   + D  +  A+E  ELYLVY PI+ +   EI+  EAL++WD+  +G +     +  A
Sbjct: 519 KEEEELDDAISKALEKEELYLVYQPIVDITTSEIISNEALLRWDNESYGRLPIPVVIEFA 578

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I+ I  ++L+   R   SW+D+       I +NI+   L   +  + ++  +  +
Sbjct: 579 ERKGYIEDIGFWILKEACRQNKSWQDEGLGLTA-ISVNISVHQLEKPDFVDKVKIALELS 637

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P  ++L  +E+  M N       + +L+++G+ +++DDFGT  S LSY    P DT+
Sbjct: 638 NLAPEYLELEITETTAMENVNEKLATMLKLKRLGVKISIDDFGTGYSSLSYFTKFPIDTL 697

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +         + I+ +II MAK ++  I A+ +     +++L  MGCD IQ  +
Sbjct: 698 KIDKSFVRDMLEDSNAMTIIDTIINMAKAMDVAITAEGVETLEHMEKLKIMGCDKIQGYY 757

Query: 940 VASPLGFNSILKLLKE 955
           ++ P   + + ++LK+
Sbjct: 758 ISKPQKASVLEQMLKK 773


>gi|288870739|ref|ZP_06115124.2| putative sensory box protein [Clostridium hathewayi DSM 13479]
 gi|288866093|gb|EFC98391.1| putative sensory box protein [Clostridium hathewayi DSM 13479]
          Length = 760

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 185/439 (42%), Gaps = 8/439 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +QK+    ++ + + D +TG  +   F       +  +   +    +++ +DID +K IN
Sbjct: 323 DQKRRKAELMHSLYTDEITGGYSFAKFQVEAEKKIRRA---EVGSWSLISLDIDDFKFIN 379

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++LG   G+ ++  +   +GE     +I A  S + F   L    +   +      +   
Sbjct: 380 ELLGYEEGNHLIRYIHGVLGEWCGSEEIFAHQSADMFVA-LADSRDHDVLCRRLEELCSR 438

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +       + ++ +  ++G        +T    L  A +A    K +   H   +     
Sbjct: 439 LQSYSIWPQNKLAIVPALGIFQIRDKGLTLDFCLDCAGIARKSRKGQFAVHYAFYDERVK 498

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I+ ++  A+EN E    Y P        IVG EAL++W  P  G +   EF+
Sbjct: 499 EQIYRDKRIEAEMKGALENGEFQAYYQPQYDAESRRIVGAEALVRWARPDGGLVPPGEFI 558

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++ +M  ++      W ++     + + +N++ K L D    E    ++
Sbjct: 559 PLFEKNGFISELDRYMFRQVCEQQKEW-EERGYEVVPVSVNVSRKLLYDLNFVEKYNLIL 617

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T      +++  +ESV   N  R    +  L + G  + LDDFGT  S ++ L  + F
Sbjct: 618 TETAVDVRNVEIEITESVFFDNQPRLLDAIRHLHQSGYRILLDDFGTGYSSMAMLNDMSF 677

Query: 879 DTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           DT+K + S +     E+   I+  II +A ++E + IA+ +      + L   GCD IQ 
Sbjct: 678 DTLKIDKSFVDNIGDERGNKIVDGIIRLADSLELSTIAEGVETREQYEYLKARGCDVIQG 737

Query: 938 SHVASPLGFNSILKLLKER 956
            +   P+   S   LL  +
Sbjct: 738 YYFGRPMTAESFGMLLSSQ 756


>gi|317471247|ref|ZP_07930612.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901294|gb|EFV23243.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 563

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/553 (18%), Positives = 223/553 (40%), Gaps = 25/553 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  D+  D    + ++     L    + G +  W   +H  D+  +  
Sbjct: 19  YDAIVSSTEDYIYIIDMTTDMALISDNMLQDFDLPGRLVPGLVPVWGKLVHNKDKKRYFD 78

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D  +         E++V+  DN++ W++ R     + N + L + G+   I  + K  
Sbjct: 79  SVDDMLRGMTDIHNVEYQVKNRDNEYVWVVCRGLLKRDQNQNPLSFAGVVTPIGSKGKI- 137

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D  TG+  ++   +R+  +L+  +    L    +    D +K+IN++    
Sbjct: 138 ---------DRTTGLFTQEKCRERIEFLLNQGSARGGLLLLGL----DDFKQINNLKDHT 184

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  + + I ++L     + R  G+ F ++   E +  +I +   ++         
Sbjct: 185 FGDLVLRQMAQNIQQMLPSKTEIFRFDGDEFAVVCP-EASLEEIEELYRSIHTYANCEHE 243

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +       + S G +          ++LK A  A+  +K RG N    F     +S+  +
Sbjct: 244 IDRISYFCSVSGGISIIGKDADNYLDLLKFAASALDASKKRGKNTCTVFSPDLLQSELRL 303

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++    L   V +      LVY P++R     + G EAL++W  P   +   ++F+ + E
Sbjct: 304 MELNRQLQRCVRDGMQGFTLVYQPLVRADGLGLTGAEALLRWSCPDTEDAGPAQFIPLLE 363

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++     ++L++       W      P   + IN++    +D +    +  L+ K  
Sbjct: 364 NSGLMIEAGKWILDQAFSVCKRW--LLYCPDFIMHINVSYLQFIDKDFVPTVVLLLEKYH 421

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                I L  +ES  + +    +  L RLR++ I + +DDFGT  S L  L   P D VK
Sbjct: 422 LDAQHIVLELTESYFVTDMPALKETLQRLRQLHIRIAMDDFGTGYSSLGMLSQTPADIVK 481

Query: 883 FNG---SLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +    S +         + + ++I +  ++   +  + +    +++ +  +  D IQ  
Sbjct: 482 IDRVFISFINDRDHVFNHSFIGAVIKLCHSVGIAVCVEGVEHPGELEAVCSLEADSIQGF 541

Query: 939 HVASPLGFNSILK 951
           +++ P+  +   +
Sbjct: 542 YISKPIPADQFEE 554


>gi|195952938|ref|YP_002121228.1| diguanylate cyclase/phosphodiesterase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932550|gb|ACG57250.1| diguanylate cyclase/phosphodiesterase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 846

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 194/441 (43%), Gaps = 14/441 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           IL  IG    I    K  + +   A +D LT + N++ F + L   ++ +    N + ++
Sbjct: 409 ILNIIGSIKAIN---KYTKELEYYATRDPLTNLYNQRVFWELLEYEVERAKRH-NYKFSL 464

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +VID D +K IND  G  VGD+ L  + + I    +  DI+AR  G+ F +I+   +   
Sbjct: 465 LVIDFDNFKLINDAYGHTVGDNFLRRVAKIIEANFRNEDIIARYGGDEFVVIMPYTDAEQ 524

Query: 629 KIADFAIAMRKSIAMPINLLEREIT-VTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +     +       + +   +    T SIG A +      + E+   A+  +Y  K  
Sbjct: 525 AFSASKRLLDDIDKFSMEVNSGKYAKATISIGAAVYPDHARAAKELFVLADNLLYKMKEE 584

Query: 688 GGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G N ++                I   L   ++  ++   + PII +   +    E L++ 
Sbjct: 585 GKNGIKLPSDEDLGVFAQEFGKISFLLMETIDKKKVIPYFQPIIDIKTMKPYAYEVLMRI 644

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +      +S+ +F+ IAE L ++  ++  ++E+    I+          I I  N++ K 
Sbjct: 645 ED-NGEILSAYKFIEIAETLGLVYKLDYILIEKAIDTIV---KHKLPDNIKIFFNLSPKS 700

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L+  +  + +++++++  +  +RI    +E   + N E  +  +  L+  G S  +DDFG
Sbjct: 701 LIIGDFIDKVKSILTQYSFPSTRIVFEITERDTIKNIEIIKKFVQALKLEGFSFAIDDFG 760

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
              +  +Y+ + P D VK +G ++   T      A ++S + + K +    IA+ +  E 
Sbjct: 761 AGFASYAYIKHFPIDFVKIDGEIVRTMTSNKIDEAFIKSTVTLTKALNMKTIAEFVENEE 820

Query: 923 DIKELTRMGCDYIQDSHVASP 943
            ++ L   G D++Q  +V  P
Sbjct: 821 TLQALISAGIDFVQGYYVGKP 841


>gi|327399458|ref|YP_004340327.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hippea maritima DSM 10411]
 gi|327182087|gb|AEA34268.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Hippea maritima DSM 10411]
          Length = 510

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/524 (24%), Positives = 248/524 (47%), Gaps = 18/524 (3%)

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           +LG +   + G   +    IH +D+     +           +    +++    +F   I
Sbjct: 1   MLGYSKKDIIG--MSIKEIIHQDDKKILNYLTKQTFASSGDYIV--VKLKTKRGEFKKAI 56

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + I  ++         I    DIT+  +    I     +D LT + NR +F+D     L+
Sbjct: 57  LHISKIATPQ---TYIIATGKDITQNTELQRIIENTLKRDPLTNLLNRYAFIDASEEYLE 113

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +   D L  +++VI   K+ +IN+V+G   G+ +L+ ++ RI   L+  D++A+L  ++
Sbjct: 114 RAKYQDKLS-SIIVIKPIKFSQINEVMGFENGNKILIEISNRIKNFLRKYDLVAKLESSK 172

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F ++L        I   +I + K +A P  +  R++ ++ +IG + +      + ++L+ 
Sbjct: 173 FAVLLKDIAREEDIFVISIDLIKELARPYYVNNRKLNISFNIGISMFPIDSNDAKDLLEK 232

Query: 677 AELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AE+A+  A+ +G N +  ++ +  S    ++ I +D   A+ N E  L + P   +  + 
Sbjct: 233 AEIALIDARLKGENAIGFYKENLKSETERKLQINQDFPEALSNKEFKLYFQPYFDIESKR 292

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IVG E L++W       I  SEF+ + E+   I  +  ++++     I  ++++ N+  I
Sbjct: 293 IVGAEVLVRWI-KNGVTIPPSEFIPVLEQTRNIVKLEDYVIKETIAFIEEFKNKLNL--I 349

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++   L+D++  + + ++          I +  +E + +    +++ LL +LR  
Sbjct: 350 PLSVNLSPTSLMDDDFIDKLISM---AGKLSQFINIEITERLFLDKLNKAKSLLKKLRAK 406

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G  + +DDFGT  S LSYL  +P D +K + S +      EK  AI+++II +AK +   
Sbjct: 407 GFRIYIDDFGTGYSSLSYLSSLPIDCIKIDISFVKKILEDEKTKAIVKTIIYLAKQLNLF 466

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            IA+ I  E  +  L  MGC   Q   ++ PL     L LLK  
Sbjct: 467 TIAEGIETEKHLTALKEMGCQIAQGFLLSKPLPKEDFLNLLKNH 510


>gi|237806992|ref|YP_002891432.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Tolumonas auensis DSM 9187]
 gi|237499253|gb|ACQ91846.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Tolumonas auensis DSM 9187]
          Length = 764

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/496 (22%), Positives = 237/496 (47%), Gaps = 17/496 (3%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            + +L+  V  R      E   R    +  +      P+   N ++       N++ ++ 
Sbjct: 280 LQRLLNRLVVERIETF-AELASRRTQGERIYW-----PVEGQN-ELDLLARTFNELMDEV 332

Query: 524 KSLEG-ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++ +  +   +  D LT + NR+   ++++ ++           +++++D+D +K IND 
Sbjct: 333 QAAQKNMHDLSITDTLTALGNRRGMEEQVSKMMKTCQL--GTPLSMLLMDLDGFKLINDS 390

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG A GD +L  + +R+ ++++  D L R+ G+ F +++     + +    A  + +++ 
Sbjct: 391 LGHAAGDLLLQEVAQRMRQVMRRQDKLFRMGGDEFAVLMPH-TTAEQGHLLAERLIETLV 449

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSF 700
            PI+  +  ++V+ S+G A W   +    E++++A+LAMY AK  G + V  F   +S  
Sbjct: 450 APIHFGQHRLSVSGSVGVAQW-DGETDGLELMRHADLAMYVAKRDGKSCVRLFEKGMSGV 508

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            S+R+ ++++L  A+    +   + P+I      +V +E L +W            F+ +
Sbjct: 509 ASERMTLEQELRRAIAEQSIEPHFQPVIDTGSGNVVAVEMLARWRRNNESVPPLG-FIRL 567

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+L +I  +++ +LE+    +  +R       +   INI+     D  L   M   I+ 
Sbjct: 568 AEDLGLINQLSMQLLEKGLTALRHFRQHYPELKLQ--INISPLQFADRHLALTMLQTIAA 625

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                + + +  +E  ++  PE+    + +  + G+SL LDDFGT  S L+ L  +PFDT
Sbjct: 626 YDLPSTALAVELTEGAMLLYPEQVEQTMRQFVEAGVSLHLDDFGTGYSSLARLRDLPFDT 685

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           VK + S +    E    + +++  MA ++   +IA+ +  + + +EL  +G   +Q    
Sbjct: 686 VKLDRSFVVMLGEGDTTLSQAVFDMATSMHMDLIAEGVENQTEYEELQAIGYRQMQGYMF 745

Query: 941 ASPLGFNSILKLLKER 956
           A P+   ++++ L+  
Sbjct: 746 ARPMPETALIQWLQAH 761


>gi|307941600|ref|ZP_07656955.1| ggdef/eal domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307775208|gb|EFO34414.1| ggdef/eal domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 533

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/439 (23%), Positives = 209/439 (47%), Gaps = 13/439 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++       +  D LT +PNR+         L    T        + ID+D +K+IND
Sbjct: 81  RREAQARADWLSIHDPLTALPNRRYLSSLKVQGLK--GTLGTSHLAFLAIDLDGFKRIND 138

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKS 640
           ++G A GD++L     R+        ++ RL G+ F +I+ +E          A  +  +
Sbjct: 139 LIGHAGGDELLKVTAERLSSQ-YPNAVVIRLGGDEFLVIVDAEEFGRASGMAAAKNLITT 197

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P+ + + ++ V AS+G A +  +     E+L  A++A+Y AK  G N    F +S  
Sbjct: 198 LCEPLTISDVQVEVGASVGIAIFPDNGEDIGELLHAADVALYFAKRSGRNTAAFFELSMH 257

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +    R  ++  +  A++   +   Y PI+ L   +IVG E L +W       +    F+
Sbjct: 258 QDVAKRAELEARVRTALQEKSIAPYYQPIVDLKSNKIVGAEVLARWSARDGSMLPPDVFI 317

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE+  + A++  +L + A D + W +      + +  NIA   L D  L + +Q ++
Sbjct: 318 PVAEEIGGVVALSEQLLSKAATDALGWPE-----DVILSFNIAPTMLSDRLLGKRIQRVL 372

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++T +  SR+++ F+E  ++   E +  ++  L   G+ + LDDFGT  S +  L  + F
Sbjct: 373 NETGFPASRLEVEFTEGALLRETEAATTVINDLVSGGVRIALDDFGTGYSNILQLSELSF 432

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            T+K +   +  +   E + AI++++I +A  +  T IA+ +        +  +GC++ Q
Sbjct: 433 STIKIDRKFVDRAVRDETQQAIVQTMIDLATRLGVTTIAEGVETAEQRDAVLNLGCEFGQ 492

Query: 937 DSHVASPLGFNSILKLLKE 955
             + +  +  + I +L + 
Sbjct: 493 GYYFSRAVPSHKIGQLFEN 511


>gi|218673240|ref|ZP_03522909.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 562

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 204/439 (46%), Gaps = 19/439 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  +  L  A  D+L+G+ NRQ  L  L  + D +A+       + ++D+D +K +ND
Sbjct: 136 LRQLAQAALYEAGHDSLSGLLNRQGLLSLLEELDDTAASPPR----LYLVDLDGFKAVND 191

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD++  ++  +          ARL G+ F ++ +       +      +    
Sbjct: 192 AWGHAVGDDLIRLVSNALTACHPEVVAAARLGGDEFALVQVGPATCEDMERA---ILALF 248

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  +  R I V ASIG A+     I   E+L+ A++A+Y AK  G      +     +
Sbjct: 249 AEPFKIGGRTIEVGASIGAAARDGD-IEPLELLRRADMALYRAKANGRGQAIEYDPELDQ 307

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    ++  L  A+ +  +  V+ P++      + GLEAL +W     GN+S   F+ 
Sbjct: 308 ERQRVAELEALLKSAIGSGAIEAVFQPLVSASTGTVTGLEALARWRTAA-GNVSPEVFIP 366

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   +I A+   ML        +W      P + + +N++   L + E    + +++ 
Sbjct: 367 LAERCGLIDALGAHMLRTSIAHAKTW------PDLALSVNVSPVQLCNPEFATEVISVLQ 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  + P R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L    FD
Sbjct: 421 QLDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALRQFGFD 480

Query: 880 TVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL++   +  K   +LR+ I +A  ++  + A+ I        L   GCD +Q 
Sbjct: 481 RMKIDRSLVSALDDGAKGADVLRATISLATALQIPVTAEGIENSRQAAILRDAGCDQLQG 540

Query: 938 SHVASPLGFNSILKLLKER 956
             +  P+    I   L+E 
Sbjct: 541 YLMGKPMSARDITGKLQEE 559


>gi|91226153|ref|ZP_01261043.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91189387|gb|EAS75665.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 637

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/443 (23%), Positives = 184/443 (41%), Gaps = 6/443 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K + + +      D  TG  NR +  + +   L    +D      V+ I     
Sbjct: 187 QEIDRRKAAEKQVSYQKTHDQGTGFLNRSALENIVQYTLQSLDSDQQ-SLVVINIGFSNA 245

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G  V D++L     R+        I  R S N   +++  E+   ++      
Sbjct: 246 RSIQTRHGFEVFDNILKEFHSRLTRHGASGFITGRPSSNDMVLLIWGEDIEARLNQLLDD 305

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + K         + EI +   IG          +  +L++A  AM   K  G        
Sbjct: 306 ITKISVDGFVFNKTEIHLHTYIGIVQAYKDCSNAKRILQHACYAMLLCKESGEPFSYFRE 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             S+  +    ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+ 
Sbjct: 366 NHSADLNSHNELESYLLQAVRNDDLVLYFQPQVDSKTRKWIGAEALLRWRHPILGDVSNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +        I +N++   L +    E +Q
Sbjct: 426 ALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELI--DNFKIAVNVSPIQLQNVNFAEQVQ 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L +L K+G++L+LDDFGT  +  SYL  
Sbjct: 484 HLLDTFHLPAHFLELEVTESALIADEIVARTTLNKLHKLGVTLSLDDFGTGYASFSYLKK 543

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +     ++   AI+ SII +AK +E  ++ + I      + L   GCD
Sbjct: 544 YPFDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLELQVVIEGIESPQQEQFLIGEGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
             Q      P+  N   + L  +
Sbjct: 604 IGQGFLYGKPMPCNEFEQSLFNQ 626


>gi|302671036|ref|YP_003830996.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395509|gb|ADL34414.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 678

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/557 (20%), Positives = 223/557 (40%), Gaps = 34/557 (6%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG--SMHGPIRNWLPYIHI 458
               E  SL++L S   +  +D   + + +      +  + +    M   I++WL     
Sbjct: 141 RVSDEIISLSLLDSEIGLICFDEAGNCIYSNKQAFKMFHIPNELSKMQEFIKDWL----- 195

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIAN 517
                    +D ++    G     +   + +   +   +     +  +G+ IL       
Sbjct: 196 ---------IDQYIRNTSGVWSQYY---SYEGSEYLYEVHQMVATTEHGNGILGSCIAVM 243

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +IT++  +  G+      D LTGI N++ F   +   +     + +    +M  +I K+K
Sbjct: 244 NITDEALNTGGVKFRETHDALTGIYNQEGFYKSVRAAITD---NPDEEYYIMCSNIRKFK 300

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IN + G+  GD+VL S+ R + +     +I  R   + F + +  +N   +    A+  
Sbjct: 301 LINQLFGMEKGDEVLKSIARNLEQWCVKGEIYGRTHSDEFVLFMKKKNFIQEEFVEAVRN 360

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             S+     L      +   IG     + +    EML  A +AM          +  +  
Sbjct: 361 VASL-----LDSSIYRLEFQIGVYQIANVREHIYEMLDKARMAMESIPDGKELTIAFYDD 415

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +      I      A++  + ++   P +   + ++ G EAL +W HP+ G I   
Sbjct: 416 EMLSNTLRENEIINSFHAALDEGQFHIFLQPQVD-KNGKLSGGEALARWIHPERGIIPPG 474

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E   +I  ++ ++ E  AR +  W    +     I +NI+ KDL   ++     
Sbjct: 475 MFIGVLENANLIYKMDRYVWELAARQLSLW-KGTDKEKYRISVNISPKDLQFLDIEVVFS 533

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L  K    P ++ L  +E+ V  N       +  LRK G  + +DDFG+  S L+ L  
Sbjct: 534 ELADKYQIDPGKLNLEITETAVASNIGNCIEHMDHLRKKGFLVEIDDFGSGYSSLNLLKD 593

Query: 876 IPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              D +K +      +    +   IL  II MA++++  +IA+ +  +  ++ L +MGC+
Sbjct: 594 FVVDVLKIDMKFLPTSKDHRRAEIILEHIINMAQSLDMVVIAEGVETKEQLQMLCKMGCN 653

Query: 934 YIQDSHVASPLGFNSIL 950
             Q  + + P+   +  
Sbjct: 654 LFQGYYFSKPVDIETFE 670


>gi|307945625|ref|ZP_07660961.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307771498|gb|EFO30723.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 701

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/464 (23%), Positives = 208/464 (44%), Gaps = 18/464 (3%)

Query: 505 SNGDILRYIGIAN-DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
             G++ +   +    I+  ++ L+ I    + D +TG+PNR             ++  DN
Sbjct: 227 PRGEVGQLQTVFRKMISNMREGLQEIQRLVYSDGITGLPNRTWLEKFAGEY---TSQKDN 283

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--------ILARLSGN 615
               ++   +DK+K IND+ G  VGD VL  L RR    ++            +AR +G+
Sbjct: 284 ADGLLLFAGLDKFKLINDMHGYRVGDAVLKQLARRFKVAIEELSNYYKTTAPFVARFAGD 343

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F   +  +     I  FA  +   +   + + +   +++ S+G           S+ L+
Sbjct: 344 EFVAFIPGQFTDEDIEAFAQELVDRMGRSVRVEQLLFSISMSVGCVRSEGKGEPFSDTLQ 403

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
           N  LAM+ AK  G      +             ++  L  A+E   L + Y P + +++ 
Sbjct: 404 NGNLAMHKAKSSGRARFVCYSSQLRDEIVQREFMETRLRQALEIGALSVHYQPKVDMVEH 463

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            IVG EAL++W  P+ G++S   F+ IAEE  +I  I  F+++R   DI   R+      
Sbjct: 464 RIVGAEALVRWQDPELGSVSPVHFVPIAEETGLIFQIGEFVMKRALEDIGQVRELGYD-- 521

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +NI+ + L      + +  +I ++ +   R++L  +ES ++   +     +  ++ 
Sbjct: 522 LSVAVNISPQQLYSPSFTDRVLGVIGESGFPTDRLELEVTESSLVDYSQNIMNKIIPIKD 581

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
            G+S  +DDFGT  S L+ L  +PF+T+K + S ++    +E R  I+  I+ MA  +  
Sbjct: 582 EGVSFAIDDFGTGYSCLNSLAGMPFNTLKIDRSFISDLANSEGRRRIVELILLMANQLHM 641

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +++ I  E+  + +   G  Y Q    + P+       LL  
Sbjct: 642 ETVSEGIETELQAECIQAWGGRYAQGFLWSKPVPIEDFRLLLAN 685


>gi|167747450|ref|ZP_02419577.1| hypothetical protein ANACAC_02171 [Anaerostipes caccae DSM 14662]
 gi|167652812|gb|EDR96941.1| hypothetical protein ANACAC_02171 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/435 (22%), Positives = 198/435 (45%), Gaps = 12/435 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +KK    ++  A+ D +TG  N ++F  +    L+     D  +  ++ +DID++K +ND
Sbjct: 37  EKKKQTRLMEIAYTDVITGGDNYKAFCLKAENALEK----DTAKMALLCMDIDRFKLVND 92

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G  +GD+++  + +  G++L   ++ A    +RF  ++   +           + K  
Sbjct: 93  LFGFKMGDEIIRLIWKLWGDMLCEGELAAHREADRFVALMHYHSEGE----LLKRLDKFC 148

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           +    +      +  SIG    +   ++   M   A +A    K++  ++   +     S
Sbjct: 149 SQIRKIKNMNYKIKPSIGIYLVSDRSMSVDSMSDMALIAQATVKNQIHSYYAFYNEELKS 208

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +++ +  A+ + E    + P      +E+ G EAL++W+      I  ++F+ 
Sbjct: 209 RIIHNKEMEDRMETALAHHEFCAYFQPKYDTETKELAGAEALVRWNTGDGRIIPPTDFIP 268

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I  ++ FM   + R    W DQ     + + +N++  ++  +      Q ++ 
Sbjct: 269 VFEENGLIVGLDEFMFREVCRQQREWIDQGRR-AVPVSVNLSRYNIFYSSFINKYQDILR 327

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  + L  +ESV+  +    R ++  L  IG S+ +DDFGT  S ++ LG +P D
Sbjct: 328 EYEISPKLVPLEITESVMSEDEVLLRNIIDELHSIGFSVLMDDFGTGYSSMTMLGSMPID 387

Query: 880 TVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S +      K   I+RSII +++ +   + A+ +  E   + L +M CD IQ  
Sbjct: 388 VLKLDKSFVDDIGDSKGEKIIRSIIDLSRGLGIRLTAEGVETEEQYEFLRKMKCDEIQGY 447

Query: 939 HVASPLGFNSILKLL 953
           + A P+  +    LL
Sbjct: 448 YFAKPMPGSDFQALL 462


>gi|120556001|ref|YP_960352.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120325850|gb|ABM20165.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 662

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 198/439 (45%), Gaps = 12/439 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    +   A+ D LTG+ NR   + R+   L      +N    ++ ID+D +K +ND 
Sbjct: 214 REYQHHLETLAYTDALTGLWNRNGIVRRIREYLADEVRAEN-SAALVSIDLDNFKDLNDC 272

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG    D +L  L+RR  + +     LAR  G+ F ++L    ++        A+R +  
Sbjct: 273 LGEEAADRLLGLLSRRWLDAIPADACLARTGGDEFALLLP---DASPAESRLEALRLTAR 329

Query: 643 MPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            P  L   E++   + G   +       +  +L+ A+  +Y AKH   +           
Sbjct: 330 QPFELDGVEVSAGFTAGVVLFPDGAVEDADSLLRQADNTLYRAKHEMRSGWLYLDAGERS 389

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R    + ED+   +   E  L + P + L   E++G+EALI+W HP+ G +  S F+ 
Sbjct: 390 QYRARQLLLEDIRRGLNEDEFRLYFQPKVNLRTGEVLGVEALIRWQHPREGLLPPSHFLP 449

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   +   +  ++L+     I  W  +       + +NIA+  L  +     +  ++S
Sbjct: 450 AIEHHTLNIQVGEWVLKNSLLQIQRWEQEGVRID--VSVNIAANHLQSDNFAGHLIKILS 507

Query: 820 KT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P R+ L   E+  +G+ +++   +   R++G++ +LDDFGT  S LSYL  +P 
Sbjct: 508 AFPGVDPVRLDLEILETAALGDLDKAVQTIADCRELGVTFSLDDFGTGYSSLSYLKRLPV 567

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K +   ++G  +    ++IL+ +I +++     ++A+ +      + L  +GC+  Q
Sbjct: 568 DTLKIDREFVSGIEDNGENLSILQGVIGLSRVFGKQVVAEGVESVRQGEILLSLGCECAQ 627

Query: 937 DSHVASPLGFNSILKLLKE 955
              ++ P+    I   +  
Sbjct: 628 GFAISPPIEATLIPAWINR 646


>gi|156345428|ref|XP_001621362.1| hypothetical protein NEMVEDRAFT_v1g222065 [Nematostella vectensis]
 gi|156207201|gb|EDO29262.1| predicted protein [Nematostella vectensis]
          Length = 351

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D +K +ND LG  VGD +LV + RR+  +++  D +AR+ G+ F ++L    N+ 
Sbjct: 1   MFLDLDHFKHVNDSLGHRVGDALLVEIARRLRAVVRDRDTVARIGGDEFVLLLPG-ANAQ 59

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A  A  ++++      +   E+T+  S+G A +         + + A+ AMYHAK  G
Sbjct: 60  GAARVAGKLQEASRQAYQIDRHELTIAPSMGIALYPRDGHDIDSLTQAADAAMYHAKQAG 119

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N    F           + ++  L  A+E ++LYL Y P I L    +  +EAL++W+H
Sbjct: 120 RNTYRFFTPQMQAQSLRALQLENALRRALERNQLYLHYQPQITLSTGRVRSVEALLRWEH 179

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G++S +EF+ +AE+   I  I  ++L    + +  WR+      + + +N+++    
Sbjct: 180 PELGSVSPAEFIPVAEDSGQILQIGEWVLRSAMQQLQVWRNAGL-CDLKVAVNLSAIQFH 238

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L E +  ++  +      ++L  +E V + +P ++   + RLR+ G+ L +DDFGT 
Sbjct: 239 QQQLPEIINRILLDSDLPADSLELELTEGVAIHDPRQATATMDRLREHGVRLAMDDFGTG 298

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
            S LS L       +K + S +          AI+ +II MA+ +     A+ 
Sbjct: 299 YSSLSQLKRFQIYKLKIDQSFIQDLDHDSNDRAIVSAIIRMAQALGMQTTAEG 351


>gi|251779267|ref|ZP_04822187.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083582|gb|EES49472.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 566

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/567 (22%), Positives = 223/567 (39%), Gaps = 58/567 (10%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +    + D V+ WDI+ +    +  I     L   +       W   I+ +D+D F  
Sbjct: 19  YKMIDDSTDDYVFIWDIISNVFKISSSILCNFDLDGTTTSDIETYWYKIIYDDDKDVFLH 78

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++           +E RV     +  W+  R     + NG  +   G   DI++  K  
Sbjct: 79  GINKIKLGISNTNVFECRVVNKKGEIIWISFRGSSSKDENGKSVIVFGHITDISKDTKI- 137

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D +TG+ NR  F + +   LD  A  D+    V+V+ ID +K IN+  G  
Sbjct: 138 ---------DFITGLLNRSKFQEDMINFLDKKAEFDS---AVIVMGIDNFKNINEKYGYL 185

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD V+  + ++I  +L     + R+ G++F I     N   KI      +R  + +   
Sbjct: 186 FGDMVIRDVAQKITLILPKTVNMYRIDGDKFAIFYKDVN-CEKIKLLFNNIRDYMNVEHE 244

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDR 704
           + +++   T S G A   +  ++  E+ + A  AM  AK  G N +E F       +   
Sbjct: 245 IDDKKYFCTVSCGVALHPNDALSCMELFQRANSAMEFAKISGKNRLEFFSEELYKKKIRV 304

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           + ++E L  ++ N+     L Y P ++  + E+ G EALI+W+ P+ G IS  EF+   E
Sbjct: 305 LTLQEQLRESIRNNFTGFELYYQPQVKASNHELKGAEALIRWNSPELGQISPLEFIPFLE 364

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +  +++    +    W+    +    I IN++   L +      +   I +  
Sbjct: 365 ESGLIVKVGKWVIREALKMCRYWQS--IIEDFKISINVSYIQLKEENFNVYLDQCIKEFE 422

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +ES    + +          + GI++ +DDFGT  S L+YL  +P + VK
Sbjct: 423 IKKNSVILELTESCWAPDFKFLIKKFIDFEEYGINMAIDDFGTGYSSLNYLRNLPVNIVK 482

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC-------- 932
            + S +   TEK      +  I+ +  +I+  +                  C        
Sbjct: 483 IDQSFVRHLTEKSYNFTFIEYIVKLMHSIDIKV------------------CIEGVETEE 524

Query: 933 ----------DYIQDSHVASPLGFNSI 949
                     DYIQ      P      
Sbjct: 525 EFEIINKVNPDYIQGYLFGKPESTEMF 551


>gi|126669004|ref|ZP_01739941.1| sensory box protein [Marinobacter sp. ELB17]
 gi|126626520|gb|EAZ97180.1| sensory box protein [Marinobacter sp. ELB17]
          Length = 664

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/648 (19%), Positives = 250/648 (38%), Gaps = 50/648 (7%)

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           F+F +LH  +   KV      G  C+  +F    + P V      + L+   L+    + 
Sbjct: 21  FIFRFLHKKQHVEKVLSGIVFGGICVVGMFSPIEFSPGVIFDPRPVVLSISGLFGGPIVA 80

Query: 328 YHGMKGYERAVLLIPA---------------------------WILIFIW--------FI 352
                      L +                             W  I +W          
Sbjct: 81  IIAAVIAGGYRLFLGGGGIYVGVTGIIASVCMGLGYRHCVQKGWAKINVWQLLLFGLLVH 140

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV------IQHVLATGYFSQGIFSDGER 406
            + + I  +L   ++   +    + +V+            ++ V         +     +
Sbjct: 141 LVVILIFTQLPAAVVAGVMSTIAIPLVLTFTPATALLGMLLKDVENRLKTEHALRESELK 200

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S  +  +      WD              I G ++    G     L  +  + +     
Sbjct: 201 LSHHLHNTPLAAITWDRNFYVTQWNKIAEEIFGYSAEEAIGEHATDL-ILKADSKAAAEA 259

Query: 467 --ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +  +    + G  +        D +         P+ + +G ++    + +D+T +K+
Sbjct: 260 GQVFAALWEKKGGE-RSNNDNVTKDGRTINCEWYNTPILDDDGKLIAIASLCDDVTVRKQ 318

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           S   I   A  D+LTG+ NR+   D+L   + ++   +      + +D+D +K IND  G
Sbjct: 319 SELIIWQQAHYDSLTGLANRKMANDKLEQAIKVADRSNK-SIAFLFLDLDLFKHINDTQG 377

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD +LV +++R+    +  D LAR  G+ F II+   ++  ++   A  + K +A P
Sbjct: 378 HDFGDMLLVEVSKRLRSYFREIDTLARFGGDEFVIIVGGLDSPDQVDLIASDLVKKMAEP 437

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRS 702
             + +  + ++ S+G   +        E+L++A+ AMY AK+ GGN  + F   +     
Sbjct: 438 FKVGQETVHISTSVGITIYPQDASDPVEILRHADQAMYAAKNNGGNRFQYFTPWMQQSAV 497

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R+ +  DL +A+  ++  L Y PI+ L++ ++   EAL++W+HP  G I  +EF+ IAE
Sbjct: 498 SRMALISDLRIALPENQFQLYYQPIVDLINGDVYKAEALLRWNHPDRGLIGPAEFIPIAE 557

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL-CEGMQALISKT 821
           E  +I  I  ++    +R    WR     P   I IN +     ++ L  E     +   
Sbjct: 558 ETKLILGIGDWVFHEASRQAARWRASF-RPNFQISINTSPVQYKNDALSAENWLEHLKTL 616

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                 I +  +E +++ +      +L   R   I +++D+FGT  S 
Sbjct: 617 ELLGDAIAVEITEGILVESGASVDKILFDFRDANIQVSIDNFGTGYSS 664


>gi|86148342|ref|ZP_01066636.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85833897|gb|EAQ52061.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 635

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/444 (22%), Positives = 189/444 (42%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++ + + I      D  TG  NR +F  RL   L            V+ I     
Sbjct: 187 QEIDKRRAAEQEINFQKNHDLGTGFLNRSAFESRLDQKLLSQQRFTGGSLAVIHIGFTNG 246

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G    D VLV   +RI  +     + AR +     +    ++   +I +    
Sbjct: 247 RRIQARYGYNALDQVLVEYRQRIDSISDVEVLTARPTSVDLVLAFSVKDLHQRIEELCQT 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + K      ++   ++ + A IG A  T     +  +++ +  AM   K  G      S 
Sbjct: 307 LVKVGHSEFDIGSDKVHLHAFIGIA-ITEHDDGADSIIQKSSEAMLACKDSGQKFAYYSQ 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +S    I+  L  AV N +L L + P +  +    VG EAL++W HP  G+IS+ 
Sbjct: 366 SHAEEQSHINKIEGYLLQAVRNDDLMLYFQPKVCPLTHRWVGAEALLRWRHPVLGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F L         W +   +    I +N+++  L + +  + + 
Sbjct: 426 TLIHMAEQNGLIFEVGNFALRNAIEQAKEWSE--YVEDFKIAVNVSAIQLKNVDFADQII 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+      P  ++L  +ES ++ +   ++  L  L  IG++L+L DFGT  +  SYL  
Sbjct: 484 HLLETYHLEPHFLELEVTESCLIADEVVAKNTLESLHNIGVTLSLGDFGTGYASFSYLKK 543

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFDT+K + S +     +++   I+RSI+ +AK ++  +  + I  E+  + +   GCD
Sbjct: 544 FPFDTIKIDKSFIDQMLNSQEDSEIVRSIVQIAKKLDLKVTIEGIESEVQEQFIINEGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+        L  + 
Sbjct: 604 VGQGYLYGKPMPSQEFEHSLINQN 627


>gi|160938961|ref|ZP_02086312.1| hypothetical protein CLOBOL_03855 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437924|gb|EDP15684.1| hypothetical protein CLOBOL_03855 [Clostridium bolteae ATCC
           BAA-613]
          Length = 627

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 193/436 (44%), Gaps = 14/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    ++     D LTG+ +++ F  R+   L            ++  +I+ +K +ND+ 
Sbjct: 176 RETAAMINLIQYDRLTGLYSKEFFYQRVKETLA---AHPEQEYDIIYSNIENFKLVNDIF 232

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+  GD +LV++     + +    I  R++ ++F  +     +  +       +      
Sbjct: 233 GVPSGDRLLVNVAAMFSKQVGRWGICGRINADQFACLSERRLDYSE------QLFAEAGN 286

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
            IN +     +    G        I+  +M   A LA+   K +   H  ++  +     
Sbjct: 287 QINAMSNVKNMVMKWGVYHIDDRSISVEQMCDRALLAVRSIKGQYRRHFAAYDDALRSKL 346

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I + +  A+   +  +   P  RL D E+ G EAL++W HP+WG  S  EF+ + 
Sbjct: 347 LREQAITDSMEDALAQGQFIVYLQPKYRLKDRELSGAEALVRWIHPEWGFQSPGEFIPLF 406

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  ++ ++ +R    +  W D    P I + +N++  D+ + +L   +   + K 
Sbjct: 407 ERNGFITQLDQYVWDRTCAFLRDW-DSKGYPQIPVSVNVSRADIYNADLANILLRTVHKY 465

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PSR+ L  +ES    NP +    +  LR++G  + +DDFG+  S L+ L  +P D +
Sbjct: 466 NLPPSRLHLEITESAYTENPGQIIDTVTHLRELGFIIEMDDFGSGYSSLNMLNQMPLDIL 525

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +   T       ILR I+ +A+ +  +++A+ +  +  ++ L  +GCDY+Q   
Sbjct: 526 KLDMKFIQSETAKPVNQGILRFIMSLARWMNLSVVAEGVETDEQLERLREIGCDYVQGYF 585

Query: 940 VASPLGFNSILKLLKE 955
              P+  +   +L+K+
Sbjct: 586 FGKPMPEDVFEELMKK 601


>gi|160941314|ref|ZP_02088651.1| hypothetical protein CLOBOL_06207 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435875|gb|EDP13642.1| hypothetical protein CLOBOL_06207 [Clostridium bolteae ATCC
           BAA-613]
          Length = 866

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/452 (23%), Positives = 204/452 (45%), Gaps = 18/452 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           IL  +    ++    +    ++     D LTG+ +++ F  ++   L            +
Sbjct: 115 ILHRVASIINL----RENAAMVNQLKYDRLTGLYSKEFFFQKVKEELA---RHPEREYDI 167

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  DI+ +K +NDV G+  GD +L  +       +    I    +G++F I++       
Sbjct: 168 ICSDIENFKLVNDVFGLPAGDRLLREVADFYQSQVGDKGICGHFNGDQFAILM------E 221

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +   +   M       +N L     V    G  S     I   +M   A LA    K + 
Sbjct: 222 RRCKYTDEMFMEATARVNALPNAKNVLVKWGIYSIEDRTIPVDQMCDRALLAACGIKGQY 281

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           G +   +             I E +  A+   +  +   P   + +E + G E+LI+W+H
Sbjct: 282 GKYFAIYDDRLRSRLLREQAITECMESALREGQFEIYLQPKYSVKEERLSGAESLIRWNH 341

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+WG  S  +F+ + E+   I  ++ ++ ++    +  W +Q   P I + +N++  D+ 
Sbjct: 342 PEWGLQSPGQFIPLFEQNGFITQLDQYVWDQTCAILQRW-EQMGYPCIPVSVNVSRADIY 400

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +L E +   + K    PSR+ L  +ES    NP +   + GRLR++G  + +DDFG+ 
Sbjct: 401 NVDLPEILTETVQKYGLPPSRLHLEITESAYTENPSQIIEVAGRLRELGFIIEMDDFGSG 460

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ L  +P D +K +   +   TEK+ +  ILR  + +A+ ++ +++A+ +      
Sbjct: 461 YSSLNMLNKMPIDILKLDMKFIQNETEKQASQGILRFTMGLARWMDLSVVAEGVETREQF 520

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++L  +GCDY+Q  + A P+      KL++E+
Sbjct: 521 EQLREIGCDYVQGYYFAKPMPCGEFEKLIREQ 552



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 8/180 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    +   A QD LTG+ NR+            +    ++   V + D+D  K IND 
Sbjct: 695 RERERMLEGEACQDYLTGLLNRRGL-----EAAADALDGKDMPLAVYLFDLDNLKHINDT 749

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  + +    + E  +  DIL+R  G+ F +I+    +          + +SI 
Sbjct: 750 FGHMRGDQTISAFAELLREQTRESDILSRFGGDEFVVIMKQMKSGESAVKKGEDICRSIC 809

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 +  +    S G   W + K   + +L+ A+ A+Y AK         +       
Sbjct: 810 E-YPFADN-VRACCSAGVVIWDTRKPLPA-ILEYADQALYRAKAENKGGCCMWEDGYEYP 866


>gi|157737788|ref|YP_001490472.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699642|gb|ABV67802.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 851

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 191/442 (43%), Gaps = 21/442 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +G    I    K  + +   A +D LT + N++ F D +   +  +    N    +MV
Sbjct: 414 NLVGSVKAIN---KYTQDLEYYAARDPLTDLFNQRVFNDMMRYEIKRAQRH-NYSFALMV 469

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID D +K IND  G + GD +L ++   + +  +  DI+AR  G+ F IIL         
Sbjct: 470 IDCDNFKPINDNFGHSFGDTLLQTVATTLKKEKRDEDIVARYGGDEFTIILPECTEKE-A 528

Query: 631 ADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              A  + K +A    +      I +T SIG   + +   +  +M   A+  MY AK  G
Sbjct: 529 MIVANRISKKMATEKIVAPDGSNIGITISIGICVYPTHTTSQKDMFIIADSMMYQAKEEG 588

Query: 689 GNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQ 743
            N ++    +   SD + +K++    L  A+EN+++   + PI     D  IV  E L++
Sbjct: 589 KNAIKIPTKN-DISDILKLKQEKTALLLKAIENNKIEPYFQPIKPSSKDSNIVIHELLMR 647

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
             H     IS+ EF+ IAE   +I  ++L ++E+  + I             + IN++ K
Sbjct: 648 I-HQDDKIISAFEFIEIAESKGLINIMDLMVIEKAFQKIQDSLYSGL-----LFINLSPK 701

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+     + +     K   +  +I    +E   + N       +  L+  G    +DDF
Sbjct: 702 SLIIGNFIDKINEFAKKYDINKEKIVFEITERETVKNFTLLEKFVHNLKSEGFKFAIDDF 761

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   S   Y+   P D +K +G  +      EK  A + S+I +AK +    IA+ +  E
Sbjct: 762 GAGFSSFHYVKKFPIDYLKIDGDFIININNDEKDKAFVSSMITLAKELNIQTIAEFVENE 821

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
             I+ L  +  DY Q  H+  P
Sbjct: 822 EIIEVLDTLKIDYYQGWHIGRP 843


>gi|319424995|gb|ADV53069.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens 200]
          Length = 735

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/580 (20%), Positives = 231/580 (39%), Gaps = 23/580 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I   +     +Q + +   +               D               L +  G
Sbjct: 160 AVMIGSAMELTRIAQNMLASEYKYRQVFNQLPLACALLDKHNQLAMLNKVALQTLPVQHG 219

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                  +    +   +       L        G+   E  +++   Q  W+ +    + 
Sbjct: 220 ------YDLFQMVREEEHAMLNDTLHMVREGVLGQAWCELPLKSVH-QLDWLRLSFSQIH 272

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D+
Sbjct: 273 GDKNTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---QARDD 326

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   V  ID+D+++ IN+V G   GD +L  L  R+ +L++  DI+ARL G+ FG IL+ 
Sbjct: 327 MPTCVAFIDVDQFQVINNVSGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG-ILMH 385

Query: 624 ENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +N       A  +   +A        R   V+ S+G A    S      ++  A+ A  
Sbjct: 386 YSNVDSAKHIANRICTQLATHEFIWENRCHNVSVSMGIAKLDKSAADIYTVMSQADAACR 445

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VG 737
            AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L   E  + 
Sbjct: 446 LAKDKGRNGWHLYSAKDPKMTRLYTEMMASVDIVSALALNQFELYFQIITPLNRRESGLH 505

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LE L++   P    +S + F+  AE   +   ++L++++ + +   S         + + 
Sbjct: 506 LEILLRMVQPNGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGSSHLAIWQQLDL-VS 564

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+++  L D+E    ++  +        ++ +  +E+  +   E++  L+  LR +   
Sbjct: 565 VNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLEQATKLIEVLRPLNCQ 624

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L LDDFG   S  +YL  +  D VK +G  +          AI+++I  + +++   IIA
Sbjct: 625 LALDDFGAGFSSFAYLKRLNVDFVKIDGQFVLNICEDPADQAIVKAICQLGQDMGFDIIA 684

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +       +L  +G DY Q   +  P   + +   L  
Sbjct: 685 EFVESPEIGLKLQMLGVDYAQGYAINKPTRLSDLTSGLSR 724


>gi|259415673|ref|ZP_05739594.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348903|gb|EEW60665.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 649

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 185/372 (49%), Gaps = 7/372 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  D LTG+PNR     +L  +      ++  R  +M +D++ +K++NDV 
Sbjct: 245 ETRHQLNHAATHDPLTGMPNRMWLTRKLDALKIRLDENETARAAIMTVDLNLFKEVNDVY 304

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL  +  R+ E     + + R+ G+ F  I        ++  FA  +  +I  
Sbjct: 305 GHAAGDAVLRQVALRLTEQEGEGECITRVGGDEFVAIKEGFRRIEEVQSFAERLHAAIVE 364

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           PI+L E  + V ASIG A+        +++L  +++AMY AK      +  F   +    
Sbjct: 365 PIDLDEVSLRVGASIGIATTLEDGRNPADLLHKSDVAMYRAKSEPDTPICQFNAEMDRRS 424

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            ++  +  DL  A+++ E  LVY     L     VG E L++W+HP  G +S ++F+ IA
Sbjct: 425 REKTQMVHDLRQALQHDEFELVYQLQNALDTLAPVGFEVLLRWNHPNRGRVSPADFIPIA 484

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I+ I  ++L    R+   W       P  + +N+A + L+     E +  ++ +T
Sbjct: 485 EETGLIRDIGRWVLREACREAAQWSR-----PYSVAVNVAPQQLVQPSFIEDVMDILMET 539

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+R++L  +E+ ++ +   +  ++ +L+ IGI + +DDFGT  S L+ L   PFD +
Sbjct: 540 GIDPARLELEITEASIIDDQAHTLKVMHKLKAIGIRIAMDDFGTGYSSLATLQAFPFDKI 599

Query: 882 KFNGSLMTGSTE 893
           K + S +    +
Sbjct: 600 KIDRSFVHDVHK 611


>gi|332716978|ref|YP_004444444.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
 gi|325063663|gb|ADY67353.1| sensory box/GGDEF family protein [Agrobacterium sp. H13-3]
          Length = 650

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 205/425 (48%), Gaps = 11/425 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT +PNR++F   L   ++ +      R  + VID+D +K +ND+ G +VGD +LVS+
Sbjct: 224 DSLTELPNRRAFFAHLEAEIEKA-RVAGTRLALGVIDLDGFKPVNDLYGHSVGDRLLVSV 282

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           ++R+ + L       RL G+ F I+     +  ++   A  + + +    +L E  + V 
Sbjct: 283 SKRLTDTLT-TSRAFRLGGDEFAIVAPIIPDDAQLVANANVISERLREAYHLPEGTVHVA 341

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           AS+G A +    +T  ++   A+ A+YHAK   RG   +         +    I+  L  
Sbjct: 342 ASMGIAVFPCLALTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEHLLKQ 401

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
               +EL +V+ PI+ + D    G EAL +W  P  G++  ++F  IAE   ++ ++   
Sbjct: 402 KEIENELSVVFQPIVDIRDGRAAGFEALARWHSPVLGHVPPAQFFAIAERAGIVSSLTRP 461

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L         W      P + +  N+++ DL   E    +  +I  + +  +RI L  +
Sbjct: 462 LLRTALASASVW-----EPSLRLSFNLSAHDLNSCEGVLSLIGIIENSGFDATRIDLEIT 516

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+    + E+ R  +  LR++G  ++LDDFGT  S L+ L  +P   +K + S +T   E
Sbjct: 517 ETAFAHDFEQVRQSVEMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTDLHE 576

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           K     I++S++ +++++    + + +    ++  L  +G   +Q    A+PL    + +
Sbjct: 577 KPASYKIVKSLLTLSRDMGLECVVEGVETLEELAALEGLGATLVQGYIYAAPLREQDVRE 636

Query: 952 LLKER 956
            L  +
Sbjct: 637 FLSGQ 641


>gi|254502336|ref|ZP_05114487.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438407|gb|EEE45086.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 852

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/603 (22%), Positives = 253/603 (41%), Gaps = 48/603 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD---------I 434
             +  +        +       R   A+         +D     V               
Sbjct: 256 VVIRLNSTEFVREKRAAEEAQARLLAALNAYPAPFVIYDAGDCLVVCNDAYRASMSTNPA 315

Query: 435 ATILGLASGSM-------------HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
               G+    +              G    W+   H  DR+  + + D  +         
Sbjct: 316 ELKFGMHRTEIARIAIRAGKISNAIGREEEWMSDRH-QDREMDKPVQD--LELPGDVHHR 372

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R R  +     +        ++   +     +  +  E KK+   I   A  D+LTG+
Sbjct: 373 LLRSRVENGDLVILR------IDTTELVRHRRALERNSEELKKANAEITHMALHDDLTGL 426

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR+     L    +           +  ID+D++K+IND +G   GDDVLV    RI  
Sbjct: 427 GNRRYLAKTLEEFTERRQATGGEIAAL-HIDLDRFKQINDTMGHRAGDDVLVEAANRIRL 485

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           +L+  + +AR+ G+ F +++   ++S + AD A  + K ++ P+   ++E  V ASIG A
Sbjct: 486 VLEPAEAVARIGGDEFVVLVPLSDSSDRPADLANTLLKDLSRPVRTHDKECRVGASIGIA 545

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSE 719
                      +L N+++A+Y AKHRG   +E +  S     R    + +D+  A+E  E
Sbjct: 546 ETPL--SEVENLLTNSDVALYKAKHRGRGRIEVYDCSDLEDVRRAKALADDILRAIEKRE 603

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
               Y P +     +IVG+E L +W HP+ G ++ SEF+ +A ++ +   I+  M E+  
Sbjct: 604 FEPYYQPQVEAKSGQIVGIEVLARWRHPEKGILAPSEFLTVATDISVAGEIDQQMFEKAI 663

Query: 780 RDIISWRDQANMPPIFILINIA--SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               +    A+   I +  N++    +L D    E +Q  I      P +I     E++ 
Sbjct: 664 EQCRNLPVAASG-SIALSFNVSEDRVNLTD---LEDIQRQIQAY---PGQISFELLETIF 716

Query: 838 MGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEK 894
           +   + +    L  LR +GIS+ +DDFG+  + +  L  I  D +K +  L  +  +   
Sbjct: 717 LEEQDNAFLQRLNELRGMGISIEVDDFGSGRASVVALQRINPDRLKIDRRLAPLVTAGSG 776

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + +LRSII +A+ +E  + A+ +  +     L+++GCD +Q  + A P+ F+ ++ LL+
Sbjct: 777 GLRLLRSIIEIAQALELGVTAEGVETKEQADLLSKLGCDRLQGYYFAKPMPFSDLVALLE 836

Query: 955 ERF 957
            + 
Sbjct: 837 AQQ 839


>gi|261212531|ref|ZP_05926816.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260838462|gb|EEX65118.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 632

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 197/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +    +   L L+  ++N    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDVGTGFLNRNALEQHI--ALQLNQLEENEELAVVHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   +G  + DDVL  L  R+G + +   + AR +     ++L S      +     
Sbjct: 244 ARQLQARIGFHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLLLKSTQLDGHLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFIAEGLPLHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLMLYFQPKVSVKTQHWVGAEALLRWKHPLLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L    +    W      P   I INI+S  L ++   + +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHHAIKAASDWLA--IYPNFHIAINISSVQLKNSRFVDQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RELLALYHFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +     +E    I+RS++ +AK ++  ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFLEQIEHSESDQEIVRSMLHVAKKLKLNVVVEGIETPQQEQFILEHGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+  +   + LK  
Sbjct: 601 DIGQGFLYGRPMPSDEFEQKLKSH 624


>gi|226355217|ref|YP_002784957.1| hypothetical protein Deide_03810 [Deinococcus deserti VCD115]
 gi|226317207|gb|ACO45203.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 840

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 93/415 (22%), Positives = 184/415 (44%), Gaps = 23/415 (5%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+PNR      L  +   +        T++++DID+++ +ND  G  V D +L 
Sbjct: 430 LTDHLTGLPNRLMLSAHLDQVSRQAQ-----PFTLVMLDIDQFRFLNDSHGYDVADSLLR 484

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
            +  R+ E +   + LAR   + F ++  S      + +    +  ++    +      +
Sbjct: 485 LVATRLQEAVHPGETLARTGPDEFTLLSPS----GMVEELRNRVSGALQGLTLGTGTSSV 540

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
            VT S G A W    + + E+ +   +A+  A+  G                  +++ L 
Sbjct: 541 PVTVSAGAACWPDHGLRADEVRRVTTVALQEAQREGHAWRVYDPAQHTGPG---LEQALA 597

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ N E  L Y P++     ++V  EAL++W+    G  S + F+ + E    I  +  
Sbjct: 598 TALSNGEFELHYQPVVDDPSGQVVSAEALLRWNSAVHGPQSPAVFIPLLERSGQIVRVGE 657

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R    W        + + +N+++      +L   +++ +  +   P +++L  
Sbjct: 658 WVLHEACRAAAGW------GGVRVAVNLSALQFASGDLIGTVRSALDSSGLPPEQLELEI 711

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES++M NP R+  LL RLR +G+ + LDDFGT  S LSY+ +     VK +   +    
Sbjct: 712 TESLMMQNPTRTADLLDRLRSLGVGVMLDDFGTGYSSLSYIHHFALSGVKIDREFVRQLD 771

Query: 893 EKRIA----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            +  A    I+R+++ +  ++   ++A+ I  +   + L  M    +Q    A P
Sbjct: 772 TETRARGQVIIRAVVQICGDLGLKVVAEGIETQAQREVLREMSVSQMQGFLFARP 826


>gi|300856018|ref|YP_003781002.1| GGDEF and EAL domain-containing signal transduction protein
           [Clostridium ljungdahlii DSM 13528]
 gi|300436133|gb|ADK15900.1| signal transduction protein containing a GGDEF and EAL domain
           [Clostridium ljungdahlii DSM 13528]
          Length = 386

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 101/397 (25%), Positives = 192/397 (48%), Gaps = 23/397 (5%)

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +K IND+ G   GD +L      +G+L     ++AR+ G+ F I+    +N   + +
Sbjct: 1   MDNFKNINDIFGYEYGDKLLRKTGEVLGQLHL--GMVARMGGSEFLILKNGYDNKQHLEN 58

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +I+   N+   E  ++ ++G   +       + +L+N ++A+   K  G N  
Sbjct: 59  IAQCIINTISGLWNIDGTETLISVTVGITVYPRDGEEVATLLRNVDIALNRTKLLGKNSY 118

Query: 693 ESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + F  S +     +V ++++L  A++N+E  L Y P + + + ++VG EALI+W+ PK G
Sbjct: 119 KLFEKSMYNEILKKVEMEKELRKAIKNNEFILYYQPQVDMENTKVVGFEALIRWNSPKLG 178

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ +AEE  +I  I  ++L+        W+D       FI IN++   L D+  
Sbjct: 179 WVMPLEFINLAEETGLIIPIGEWVLKTACSQNKMWKDNGYSYD-FISINVSPIQLKDDNF 237

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++ +T   P  +++  +ESV+M + E +  ++  L+ +G+ + LDDFG+  S L
Sbjct: 238 VYTVKKVLEETELKPEYLEIEITESVMMESLESNLKVINELKNMGVKVALDDFGSGYSSL 297

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI------ 922
           +YL  IP +T+K + + + G         I   II +A  ++           +      
Sbjct: 298 NYLKSIPINTLKIDKTFIDGICSDYYEDIITEEIIKLAHRMKLE--------VVAEGVEE 349

Query: 923 --DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              IK L    C+ IQ  +   P+    I   LK++ 
Sbjct: 350 ENQIKSLKGKNCNKIQGYYFGKPMPSEDIKDFLKKQL 386


>gi|330888125|gb|EGH20786.1| sensory box protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 630

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/486 (25%), Positives = 225/486 (46%), Gaps = 24/486 (4%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN---- 451
              + +  E+ + A   S D +   +I   R V        + G ++  + G   +    
Sbjct: 155 QSALEASEEKFAKAFHSSPDSITITEIESGRYVEVNDGFCRLTGFSAQEVLGRTAHEIGI 214

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +          ++D      R   +    +   D     +++ I     +  +   
Sbjct: 215 WSDTVQRE------YMIDELRQKGRVHHRE---MNGQDKHGAPLVLDISVEFITLNNTAC 265

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  A DI + K +   +   A+ D LTG+PNR   +DRL+  + L     NLR  ++ +
Sbjct: 266 LLMNARDIGQLKTAQAQVQHLAYHDPLTGLPNRALLMDRLSQQVSLLQ-HQNLRGALLFL 324

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---- 627
           D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++   + +    
Sbjct: 325 DLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLDGTRDEV 384

Query: 628 -LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             ++   A  +R+ +A P+ L    + VT SIG        +  +++LK A++A+Y AK 
Sbjct: 385 TQQVRVLADNLRELLAEPMFLDGHRLQVTPSIGIVLIPDDGLAPADLLKRADIALYRAKD 444

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N  + F VS  +  S R+ ++ DL LA+  +E  L +   I   D+ I G EAL++W
Sbjct: 445 SGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFQLHFQAQIDCRDQYITGAEALLRW 504

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIAS 802
           DHP++G +S  +F+ I EE  MI  +   +L+   +       Q         + +NI+ 
Sbjct: 505 DHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKTGGLLLKQGLISKNKFLMGVNISP 564

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    N+  E +Q  + +     S +KL  +E +V+ N + + L +  L+++G+S  +DD
Sbjct: 565 RQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQNLDDTILKMLSLKELGVSFAMDD 624

Query: 863 FGTKCS 868
           FGT  S
Sbjct: 625 FGTGYS 630



 Score = 92.3 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + +    +R  LA+  +    WD DI  +R+  +   + + G+A+       R +   
Sbjct: 26  AERVLQQTRDRLELALELAHMGTWDLDITGNRLQASARASALHGMAALPFDEDGRQFFGS 85

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +   +R   R +  + +  ++  LQ  +R +  +     +  R R   N +G  ++  G 
Sbjct: 86  LPAEERRRMRAVYAAALENQQDCLQVTYRFQLQNGTSRLLESRARIYRNEHGQAVKLSGT 145

Query: 516 ANDITEQK-----KSLEGILCNAFQ---DNLT 539
             DIT+Q      ++ E     AF    D++T
Sbjct: 146 VLDITQQCVQSALEASEEKFAKAFHSSPDSIT 177


>gi|254447372|ref|ZP_05060838.1| diguanylate cyclase/phosphodiesterase [gamma proteobacterium
           HTCC5015]
 gi|198262715|gb|EDY86994.1| diguanylate cyclase/phosphodiesterase [gamma proteobacterium
           HTCC5015]
          Length = 767

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/443 (23%), Positives = 192/443 (43%), Gaps = 17/443 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  E IL  A  D+LTG+      L  L   L            ++ I   + + IN
Sbjct: 333 EIRQREEKILYQANHDHLTGLLLSAKLLQSLRGELSNLRE-----FALLTIGSPQLRDIN 387

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G  VGD  LV + +R+           R+         +  ++   +      +  +
Sbjct: 388 NAFGHEVGDACLVEVAKRLEPFTASQSHACRIR----NYFKLRIDDVSNLETLMHDVIAT 443

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           + MP  +    + +  +IG A +      +  + + + +A+  A                
Sbjct: 444 LEMPYWVQGLRLQMNFNIGVAHYPDQADDADSVWRRSNMALDTATSEQLKIGYYRDGEDQ 503

Query: 700 FRSDRVMIKEDLC---LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            R+ RV +  DL       E  E+++ Y P  RL D  +   EALI+W HP+ G +S  +
Sbjct: 504 KRTARVELINDLRKQLQNKEQGEVFMAYQPKRRLDDNTVSHAEALIRWVHPELGFVSPED 563

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+  +I  ++ +++ ++A  I  WR Q     + + IN++++DL + E    ++ 
Sbjct: 564 FIPLAEQTGLINELSRWVVSQVAAQIARWRSQGIR--MSVAINLSAEDLFNAETRLHIEK 621

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++      PS I    +ES V+ +    R L+G LR  G S+ +DDFGT  S L  L  +
Sbjct: 622 VLHDFDLEPSAISFEVTESAVIRDNGDERNLIGDLRDKGFSIAVDDFGTGYSSLEQLKKV 681

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +    +      I+RS I +A  +   +IA+ +      + L   GCD+
Sbjct: 682 PVSHLKIDKSFVLQLAQNREDQIIVRSTIELAHQLGLEVIAEGVEDAQSEQLLKEYGCDW 741

Query: 935 IQDSHVASPLGFNSILKLLKERF 957
           +Q  ++A P+  +   + L    
Sbjct: 742 VQGYYLAKPMNADDFNEWLASHN 764


>gi|317057062|ref|YP_004105529.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315449331|gb|ADU22895.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 692

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/573 (18%), Positives = 212/573 (36%), Gaps = 27/573 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-LGLA--SGSMHGPIRNW 452
             + +    ++  +    + D+ +D+D+ RD +  T  I    L       +  G     
Sbjct: 121 LIRKVEEQRDKLHMVAENTDDVYYDYDVKRDIMHLTVSITRFRLDYDNCLENFLGSRAA- 179

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             ++H +D + +     S +  R  +   EFR +A D+ + W        ++ +G +   
Sbjct: 180 EEFLHPDDCEAYFDGWKSALE-RPMKGTMEFRTKAYDDDYCWYSDAFISFADESGKVTEV 238

Query: 513 IGIANDITEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G  ++I + K          E I      D LTG+ NR+ F         LS   + + 
Sbjct: 239 FGRLSNIQKLKTLTTKSDKDSEYIRFLLQTDQLTGLYNRKGFTQ--NAANALSERQEGMV 296

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++  DI+ +  +N+  G   G+ +L   T  +        +  R+  + F  +  S+N
Sbjct: 297 YAIVYSDINDFSYVNENFGYETGNTMLRDYTACLRGGA-SYIMGCRIYSDYFICLCRSKN 355

Query: 626 NSLKIADFAIAMRKS---IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +  I        +            +  I    + G        I  +  + NA LA  
Sbjct: 356 RAALIRSVEQQNLRFTTMQKKKFPSGDIRI----ACGMYILPDGDIELNTAIDNANLARR 411

Query: 683 HAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             KH        +  R+   +     I  +L  A++N ++ +   P   L    I+G EA
Sbjct: 412 SVKHSSSILCGIYSQRMRMQKIYEQSICNELHSAIKNRQIEMFLQPKFHLEKRVIIGAEA 471

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +W +P        EF+ + E++  I  ++ F+   + R +  W        I + +N 
Sbjct: 472 LARWRNPNGTYKMPFEFIPVLEKVGYIDELDFFIYGEVLRTLEKW-KHDGRSIIPVSVNF 530

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   +   +  E +     K       +++  +ES   G+ +    ++ +LR +G  +++
Sbjct: 531 SQHHITQPKFVENIIKTADKYDVDKGDVEIEITESCFSGDTQALFSVMDKLRSVGFKVSI 590

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG   S LS L   P D VK + S +      +     + ++  +    +  II + +
Sbjct: 591 DDFGIGYSTLSVLMNAPVDIVKIDKSFIDNIEQNKNDRDFVANMCSLIDTAKKDIIFEGV 650

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +     L + G    Q       +  +   +
Sbjct: 651 ETDAQAAILCQSGYTKAQGWLFDKAMPLDDFEQ 683


>gi|255306628|ref|ZP_05350799.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 510

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/446 (23%), Positives = 192/446 (43%), Gaps = 13/446 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I I   I ++      +   A+ DNLTG  N  +    +     +   +  ++  ++ I
Sbjct: 67  VILIFYIIYDKLNFKIKLQRIAYTDNLTG-AN--TIDKFVIDANKILCKNTQVKYALLYI 123

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DIDK+K IND+ G  VG+++L +LT+ I   +   ++ AR+S + F II+        I 
Sbjct: 124 DIDKFKYINDLFGYEVGNEILRNLTKIIKSNIFEEEMFARISADNFIIIMKYI-EEEDIT 182

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + + + +  N  E +  +  S G           +  +  A +    AK    + 
Sbjct: 183 KRLKTIFEELDLFNNNQEEKYKLVLSCGIYFILPEDRDINSSIDRANIPHKMAKGGHKSS 242

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +             ++  +  ++EN E  +   P I L   EI G EAL++W  P  
Sbjct: 243 YAFYDNKIHDQEIKEKEMENTMFSSLENKEFIIYLQPKIELNTGEIQGSEALVRWKRPDK 302

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I  +EF+   E    +  ++L++LE +   +  W D    P     + ++   L  N 
Sbjct: 303 GLIPPNEFIPFFERNGFVINLDLYVLEEVCIYLRKWIDAGINP-----VTVSRIHLYCNN 357

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E  + +I K       I+L  +ES++  N +    ++  L+KIG  +++DDFG+  S 
Sbjct: 358 FIETYKNIIDKYNIPAKYIELELTESIIFDNFDILIDIMNNLKKIGFLISMDDFGSGYSS 417

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+ L  IP D +K +   +  +  +++   I+  +I MAK +   +I++ +  E   K L
Sbjct: 418 LNMLKEIPMDILKLDQKFIMETYNSKRSKIIVTKVIEMAKELGMKVISEGVETEEQFKLL 477

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
             + CD  Q      P+       L+
Sbjct: 478 KEVKCDMAQGYLFGKPMPIEEFEHLI 503


>gi|311696658|gb|ADP99531.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 784

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/456 (23%), Positives = 207/456 (45%), Gaps = 12/456 (2%)

Query: 500 RPMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            P   + G++ +      D+ +  ++    I   A  D++TG+ NR + +     + +  
Sbjct: 316 APAIRAGGELTQLRNALRDMLSGLREREAQIRYAATHDDVTGLKNRNALMQEAAELFENR 375

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
            T      +++ I ++    IND LG+  GD VL+ + +R+ + L    ILAR  G  F 
Sbjct: 376 GT-----GSLVGIRLNDLSDINDTLGLEFGDKVLIGIAKRLQQELPDAHILARTGGGEFL 430

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
            ++ S     + +D    +   I  P+ + +   ++  +I           +  + +   
Sbjct: 431 ALIPSLP-PEQGSDRIRQLHALIESPLQVDQTPFSLRVTIVTMELPEDASDTDALRRRLN 489

Query: 679 LAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           L    A+ H                  + +  DL  A+ N+ L++ Y P +     E+V 
Sbjct: 490 LTFEQAEAHPEAFTRYKPGQDESHLRELKLVTDLHTAILNNGLHMNYQPKLNSQTGELVQ 549

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W HP+ G IS  EF+ +AE+   I  +   +L+R+A D   W +Q       + 
Sbjct: 550 VEALVRWIHPELGFISPEEFIFLAEQSGQIHDLTAHILQRVASDARRWHEQGVDAG--VA 607

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN+++ DL    L + +        ++  R+ L  +ES +M +PE +   L RLR++G++
Sbjct: 608 INLSAMDLTWPALIQHIGDTFEGWHHNLERVTLEVTESALMEDPEEAMATLNRLRELGVT 667

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIA 915
           L++DDFGT  S LS L  +P   +K + S +       +   I+RS I MA  +   ++A
Sbjct: 668 LSVDDFGTGYSSLSQLRKLPVQELKIDKSFVLRLDTEPQDQLIVRSTIDMAHGLGLKVVA 727

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + I      + L   GC+  Q  +++ P+    + +
Sbjct: 728 EGIENLEAWRLLQHWGCNLAQGFYLSRPVAPEDLPE 763


>gi|213966927|ref|ZP_03395077.1| diguanylate cyclase/phosphodiesterase [Pseudomonas syringae pv.
           tomato T1]
 gi|301385112|ref|ZP_07233530.1| GGDEF [Pseudomonas syringae pv. tomato Max13]
 gi|213928249|gb|EEB61794.1| diguanylate cyclase/phosphodiesterase [Pseudomonas syringae pv.
           tomato T1]
          Length = 533

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 208/426 (48%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L      ++ R  V +ID+DK+K IND  G AVGD  
Sbjct: 103 LARHDPLSGLLNRRVFHEQLVARL----QQESTRTAVFLIDLDKFKLINDTHGHAVGDAA 158

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + +        +ARL G+ FG+ +  + N  ++A  A  +   IA+   +L R
Sbjct: 159 ICAVAESLRDATAGWQASVARLGGDEFGLAVSGDFNQFELATLAENVLAKIALSSAVLPR 218

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            I ++A++G A        +  +L+ A+ AMY  KH G      + VS  R  R+     
Sbjct: 219 VI-LSATLGVAISPLDGSDAEVLLQRADSAMYRGKHSGRATFHFYEVSFEREQRLQEVFA 277

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 278 QELRHAIEEKHIQPFYQPIVSLPEQRLAGFELLARWLHPERGIILPMDFIPVAEQLGLIK 337

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  E ++ L  +  +  +R+
Sbjct: 338 QLTESLLLQAFDHARDWPS-----DFTLSINVTSLMIESLDFPEWLEQLACEGRFPLNRL 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L  LR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 393 EVEVTENTLVANVDSARLNLECLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 452

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+   K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 453 DTSLDNQNEMVKAILAQGKSLRMKITAEGVEHEDLAHWLAAHECDFAQGYLFGRPLPLAQ 512

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 513 VTALLA 518


>gi|315637576|ref|ZP_07892783.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22]
 gi|315478167|gb|EFU68893.1| diguanylate cyclase/phosphodiesterase [Arcobacter butzleri JV22]
          Length = 851

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 192/442 (43%), Gaps = 21/442 (4%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +G    I    K  + +   A +D LT + N++ F D +   +  +    N    +MV
Sbjct: 414 NLVGSVKAIN---KYTQDLEYYAARDPLTDLFNQRVFNDMMRYEIKRAQRH-NYSFALMV 469

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID D +K IND  G + GD +L ++   + +  +  DI+AR  G+ F IIL         
Sbjct: 470 IDCDNFKPINDNFGHSFGDTLLQTVASTLKKEKRDEDIVARYGGDEFTIILPECTEKE-A 528

Query: 631 ADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              A  + K +A    +      I +T SIG   + +   +  +M   A+  MY AK  G
Sbjct: 529 MIVANRISKKMATEKIVAPDGSNIGITISIGICVYPTHTTSQKDMFIIADSMMYQAKEEG 588

Query: 689 GNHVESFRVSSFRSDRVMIKED----LCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQ 743
            N ++    +   SD + +K++    L  A+EN+++   + PI     D +IV  E L++
Sbjct: 589 KNAIKIPTKN-DISDILKLKQEKTALLLKAIENNKIEPYFQPIKPSSKDSDIVIHELLMR 647

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
             H     IS+ EF+ IAE   +I  ++L ++E+  + I             + IN++ K
Sbjct: 648 I-HQDDKIISAFEFIEIAESKGLINIMDLMVIEKAFQKIQDSLYSGL-----LFINLSPK 701

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+     + +     K   +  +I    +E   + N       +  L+  G    +DDF
Sbjct: 702 SLIIGNFIDKINEFAKKYDINKEKIVFEITERETVKNFTLLEKFVHNLKSEGFKFAIDDF 761

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   S   Y+   P D +K +G  +      EK  A + S+I +AK +    IA+ +  E
Sbjct: 762 GAGFSSFHYVKKFPIDYLKIDGDFIININNDEKDKAFVSSMITLAKELNIQTIAEFVENE 821

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
             I+ L  +  DY Q  H+  P
Sbjct: 822 EIIEVLDTLKIDYYQGWHIGRP 843


>gi|259415748|ref|ZP_05739668.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259347187|gb|EEW58964.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 784

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/617 (19%), Positives = 247/617 (40%), Gaps = 43/617 (6%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLA---TGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
            +++       + +V+   F   Q   A       ++ +    +R + A+  S D    +
Sbjct: 169 RVVKGGTALISLCLVMFFVFLARQMARAWHLHSEQARQLNRMSQRVTAAMGASKDGFAIF 228

Query: 422 DIVRDRVTTTPDIATIL---------GLASGSMHGPI----RNWLPYIHINDRDNFRTIL 468
           D     +T       +          G+    +           L  +    RD      
Sbjct: 229 DEENRLLTCNDTYRELSHSCPEKVIPGMTLPEILADAVAAGHYALNGMSP--RDYVDNYN 286

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE- 527
              + +     + E ++  + ++     +      +          +  +  EQ+ + E 
Sbjct: 287 QRVLSHD---YRTETQLELSGDRHIISRVNETDFGDKVVTRTCITELVRNEREQRCAAEA 343

Query: 528 ------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
                  +   +  D LT +PNR+     L      +         ++ ID+D++KKIND
Sbjct: 344 LQEAKDRLEQQSLSDPLTQLPNRRHLDREL------ARRLQTESVALVRIDLDRFKKIND 397

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           +LG   GD VL  +   +    K  D+ AR+ G+ F ++  S     +    A  + +++
Sbjct: 398 ILGHEAGDFVLCHVADVLRAHTKAGDVPARVGGDEFVVLCRSGTTLRQAETLAQRVLEAV 457

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+    +     AS G A      I++SE+L NA+ A+Y AK  G   VE F      
Sbjct: 458 LQPVAWGNKRCNFGASFGVAHGEPGTISASELLSNADAALYRAKASGRAAVEVFTPEMRA 517

Query: 702 S--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +   + + L  A+E  E+   YH        ++ G+E L +W+HP  G ++  +F+ 
Sbjct: 518 QALEERALSDRLPYAIEQGEITPYYHTQHDARSWQLAGVEVLARWEHPDLGVLTPDKFLG 577

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IA++L +   ++  + +     + S R +  + P  +  N+++  ++     E ++A I 
Sbjct: 578 IAKQLGLEAELDGCIFDTAVAQMNSLRAEGILVP-RVAFNVSAPRIMQPSFIESVRARIP 636

Query: 820 KTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                         ES+   +  E     +  L+ +G  + +DDFG+  + ++ +  I  
Sbjct: 637 DH---RENFAFEILESISCEDEGEALIFCIDALKDMGFQIDVDDFGSGHASINGVLNIEP 693

Query: 879 DTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + +++   G +E+   ++ S++ +A  ++  IIA+ +      K L  +GCD +Q
Sbjct: 694 DALKIDRNIIFPLGKSERAERMVASVVDLAHTLDVKIIAEGVDTIEKAKTLGEIGCDILQ 753

Query: 937 DSHVASPLGFNSILKLL 953
             + + P  F ++ + L
Sbjct: 754 GFYFSKPRSFEALKQNL 770


>gi|302059667|ref|ZP_07251208.1| GGDEF [Pseudomonas syringae pv. tomato K40]
          Length = 512

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/426 (27%), Positives = 208/426 (48%), Gaps = 13/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D L+G+ NR+ F ++L   L      ++ R  V +ID+DK+K IND  G AVGD  
Sbjct: 82  LARHDPLSGLLNRRVFHEQLVARL----QQESTRTAVFLIDLDKFKLINDTHGHAVGDAA 137

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + ++   + +        +ARL G+ FG+ +  + N  ++A  A  +   IA+   +L R
Sbjct: 138 ICAVAESLRDATAGWQASVARLGGDEFGLAVSGDFNQFELATLAENVLAKIALSSAVLPR 197

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            I ++A++G A        +  +L+ A+ AMY  KH G      + VS  R  R+     
Sbjct: 198 VI-LSATLGVAISPLDGSDAEVLLQRADSAMYRGKHSGRATFHFYEVSFEREQRLQEVFA 256

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+E   +   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +IK
Sbjct: 257 QELRHAIEEKHIQPFYQPIVSLPEQRLAGFELLARWLHPERGIILPMDFIPVAEQLGLIK 316

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +       W          + IN+ S  +   +  E ++ L  +  +  +R+
Sbjct: 317 QLTESLLLQAFDHARDWPS-----DFTLSINVTSLMIESLDFPEWLEQLACEGRFPLNRL 371

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+ ++ N + +RL L  LR +G+S+ LDDFGT  S L +L  +  D +K + S  
Sbjct: 372 EVEVTENTLVANVDSARLNLECLRAMGVSVALDDFGTGYSGLYHLTKLAIDKIKIDRSFF 431

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S + +  ++++I+   K++   I A+ +  E     L    CD+ Q      PL    
Sbjct: 432 DTSLDNQNEMVKAILAQGKSLRMKITAEGVEHEDLAHWLAAHECDFAQGYLFGRPLPLAQ 491

Query: 949 ILKLLK 954
           +  LL 
Sbjct: 492 VTALLA 497


>gi|167746442|ref|ZP_02418569.1| hypothetical protein ANACAC_01152 [Anaerostipes caccae DSM 14662]
 gi|167653402|gb|EDR97531.1| hypothetical protein ANACAC_01152 [Anaerostipes caccae DSM 14662]
          Length = 568

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 222/553 (40%), Gaps = 25/553 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V  + D ++  D+  D    + ++     L    + G +  W   +H  D+  +  
Sbjct: 24  YDAIVSSTEDYIYIIDMTTDMALISDNMLQDFDLPGRLVPGLVPVWGKLVHNKDKKRYFD 83

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D  +         E++V+  DN++ W++ R     + N + L + G+   I  + K  
Sbjct: 84  SVDDMLRGMTDIHNVEYQVKNRDNEYVWVVCRGLLKRDQNQNPLSFAGVVTPIGSKGKI- 142

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D  TG+  ++   +R+  +L+  +    L    +    D +K+IN++    
Sbjct: 143 ---------DRTTGLFTQEKCRERIEFLLNQGSARGGLLLLGL----DDFKQINNLKDHT 189

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  + + I ++L     + R  G+ F ++   E +  +I +   ++         
Sbjct: 190 FGDLVLRQMAQNIQQMLPSKTEIFRFDGDEFAVVCP-EASLEEIEELYRSIHTYANCEHE 248

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +       + S G +          ++LK A  A+  +K RG N    F     +S+  +
Sbjct: 249 IDRISYFCSVSGGISIIGKDADNYLDLLKFAASALDASKKRGKNTCTVFSPDLLQSELRL 308

Query: 707 IK--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++    L   V +      LVY P++R     + G EAL++W  P   +   ++F+ + E
Sbjct: 309 MELNRQLQRCVRDGMQGFTLVYQPLVRADGLGLTGAEALLRWSCPDTEDAGPAQFIPLLE 368

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++     ++L++       W      P   + IN++    +D +    +  L+ K  
Sbjct: 369 NSGLMIEAGKWILDQAFSVCKRW--LLYCPDFIMHINVSYLQFIDKDFVPTVVLLLEKYH 426

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                I L  +ES  + +    +    RLR++ I + +DDFGT  S L  L   P D VK
Sbjct: 427 LDAQHIVLELTESYFVTDMPALKETFQRLRQLHIRIAMDDFGTGYSSLGMLSQTPADIVK 486

Query: 883 FNG---SLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +    S +         + + ++I +  ++   +  + +    +++ +  +  D IQ  
Sbjct: 487 IDRVFISFINDRDHVFNHSFIGAVIKLCHSVGIAVCVEGVEHPGELEAVCSLEADSIQGF 546

Query: 939 HVASPLGFNSILK 951
           +++ P+  +   +
Sbjct: 547 YISKPIPADQFEE 559


>gi|326385615|ref|ZP_08207249.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209949|gb|EGD60732.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 700

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/543 (21%), Positives = 215/543 (39%), Gaps = 22/543 (4%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRR 476
           + ++ I    +             +  + G     +L   +     +             
Sbjct: 164 IAEYAIDGALMAANARFLEAFHYRAEDVIGQDHAIFLSEAYA--VTSEYANFWKSFRLGA 221

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-GILCNAF- 534
               ++ R      +  W+      +++S G  ++ + I  D+T QK++ +      A  
Sbjct: 222 SHSIHDVRF-GRHRREVWIDAVYFTVADSRGTPVKVVQIGRDLTLQKQAEQDRAREFARA 280

Query: 535 --QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D LTG+ NR SF+  +    +           + VIDI+++  IN   G   GD +L
Sbjct: 281 ESIDCLTGLENRTSFMRSVQKYFNPVTNCTPFSGLLAVIDINRFSAINTAYGNEAGDAIL 340

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLERE 651
             + +R+   L+  DI +R+  + FG+ + S    +         + + I+ PI   + +
Sbjct: 341 WVVAKRLKSALRSHDISSRIDSDMFGVFIESLPPGTDGHKTVIERILREISAPIEFGDEQ 400

Query: 652 ITVTASIGFA------SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           I +TAS G            +          A L            +     +     R+
Sbjct: 401 IALTASAGVVTGDGWKLAREAGEDDILACAQAALKAAKTLDLNAYRLFDIEFAHAAKRRM 460

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I  DL  A++   + L Y P++   D+  VG EAL +W H   G I+  EF+ IAEE  
Sbjct: 461 TIGRDLDSAMQAETITLHYQPVVSFTDKRPVGYEALARWTHDTMGPIAPPEFISIAEETG 520

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +  ++ ++  +   +         +++ IN++   L   E   G   ++ +    P
Sbjct: 521 AIHCLGKYLFDKAVKFASTL-----DDNLWVAINVSPIQLQRKEFSTGAMDIVRRYGIHP 575

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            RI +  +ES  +      +  L  LR  G S++LDDFGT  S LS L  +  D +K + 
Sbjct: 576 HRIDIEITESASLDMSRTVQDNLRNLRDFGFSISLDDFGTGFSSLSQLLNLRADRIKIDQ 635

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S   G   + +++ I+RSI+ ++  +   ++A+ I        L  +GCDY Q      P
Sbjct: 636 SFTRGCLQSPEKVGIIRSILGLSAAMGMQVVAEGIETPEISDLLQDLGCDYGQGYLFGKP 695

Query: 944 LGF 946
           +  
Sbjct: 696 MDL 698


>gi|261212190|ref|ZP_05926476.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio sp. RC341]
 gi|260838798|gb|EEX65449.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio sp. RC341]
          Length = 791

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 201/454 (44%), Gaps = 16/454 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR  F  ++   L LS   D     V+ ID+D +K +
Sbjct: 326 TELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLK-IA 631
           ND  G  +GD +LVS    I +L            I ARLSG+ F I+L++         
Sbjct: 384 NDKYGHQIGDSLLVSFATHIRQLCKNFEASHNAYSIAARLSGDEFAILLVAPKRLHDCAN 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRVLDPIQSQDNSPLSRFPITASIGIATFPKDGDHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +  +  +  +    I+  L L + + E +LVY P      + + G E L++W     
Sbjct: 504 IAYYSQALDQIVQRRNNIERALRLGLFDQEFHLVYQPYFTCSGKRLEGFEVLLRWQSDLL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G+IS  EF+ IAE+  +   I+ +++ +  R+    +      PI + IN++S +L   +
Sbjct: 564 GDISPDEFIPIAEQTGLFGTIDRWVVSQAFREFADLQAMF-NEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +          P  I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHQQARTYQVPPQWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRQFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
              CDY+Q  +   P+    I + L       K+
Sbjct: 741 DYRCDYMQGFYFGHPMSIEEIHQWLHSPNQKKKS 774


>gi|327193425|gb|EGE60324.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 735

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/439 (22%), Positives = 198/439 (45%), Gaps = 17/439 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKYKKINDV 582
           ++ + +   +  D LTG+PNR+     +  ++      D   R  ++ ID+D++K+IND 
Sbjct: 296 RARQRLEHLSLHDALTGLPNRRF----VDQMISQPPRPDPQDRLILIHIDLDRFKEINDT 351

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL +   R+ +L    D+ AR+ G+ F     S +   K A+ A  +  ++ 
Sbjct: 352 KGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVFASWSTDPEPKAAELARQIVDALQ 411

Query: 643 MPINLLEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             I +      V AS+G A  T S       ++L NA+LA+Y AK  G      F     
Sbjct: 412 RTIFIDGAGYVVGASVGVAWETKSARDRDLGQLLLNADLALYEAKKAGRGRAAVFTEELR 471

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   + +D   A+++ EL   + P       +I G+EAL +W+HP+ G +   +F+
Sbjct: 472 SAAIHSKELADDFNQALDHDELVAFFQPQFNANTLDIAGVEALARWNHPRKGLLGPDKFI 531

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE L     ++  +L +   ++  W       P  + +NI+++ L    L   +  L 
Sbjct: 532 DAAERLGRTGDMDRLILRKALFELTRWDGLGMQIP-RVSVNISARRLAQPSLLAELAEL- 589

Query: 819 SKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                +  R+     E++   + +     ++  ++ +GI + +DDFGT+ + +  L    
Sbjct: 590 ---PVARGRLCFELLETISFDDLQPALSEIIPTIKALGIEIEIDDFGTEHASIVSLLRFE 646

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  ++     +  +  ++ SII + ++    I+A+ +      K L  +GC  +
Sbjct: 647 PRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHAKILKDLGCHLL 706

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q   +A P+  + +++  +
Sbjct: 707 QGYALARPMTSDQLIEFCR 725


>gi|126175600|ref|YP_001051749.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125998805|gb|ABN62880.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 744

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/549 (19%), Positives = 228/549 (41%), Gaps = 42/549 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  + +     G A   +               + + R  L+  +  R+ R++ +
Sbjct: 220 ISHQIIAASGEFEPYFGYALQQLE--------------QQHIRAQLELCLSRRQSRIEND 265

Query: 483 FRVR-----AADNQFHWMIIRIRPMSNSNGDILRYIGI-----ANDITEQKKSLEGILCN 532
           F         A   +   +   RP+  +  +++R   +      + ++     +  +   
Sbjct: 266 FTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVS----LMSQLDKI 321

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF+D L  IPN    +  L  +L     +   +  +++IDIDK+   N V G   G+++L
Sbjct: 322 AFEDPLVKIPNLNVLIRTLEGVLAEDIRE---KFNLLIIDIDKFSDFNRVFGSPQGNEML 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + E      ++ARL  ++F ++             A  + +    P    + +I
Sbjct: 379 KHVASCLREHFDACVLVARLKDDKFAVLGPKT------LVTADIISRLFIQPYQQGKSKI 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
           TV  S        +  T+ + +    +A+  AK  G     +++ ++  +      + + 
Sbjct: 433 TVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQANDDNVAYHFELLQA 492

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  ++  +++++   P + +   E+VG+EAL +W  P   N+   +F+ IAE   +I  +
Sbjct: 493 LQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQL 552

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +  +  + + +  +      + + +N+++       + + ++  I+     P +I++
Sbjct: 553 GEQLFVQSCQALCALNEA-GYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEV 611

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ M N E  R  L  LR I I + +DDFGT  S L+YL  + FD +K + S +  
Sbjct: 612 EVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFDRIKIDKSFIDN 671

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            T      AI+ SII + +     +IA+ +  +   K L+  GC   Q    A P+    
Sbjct: 672 VTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQGYFYAKPMPLPE 731

Query: 949 ILKLLKERF 957
           +L  LK   
Sbjct: 732 LLTWLKNYQ 740


>gi|120600312|ref|YP_964886.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|120560405|gb|ABM26332.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
          Length = 735

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/580 (20%), Positives = 231/580 (39%), Gaps = 23/580 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I   +     +Q + +   +               D               L +  G
Sbjct: 160 AVMIGSAMELTRIAQNMLASEYKYRQVFNQLPLACALLDKHNQLAMLNKVALQTLPVQHG 219

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                  +    +   +       L        G+   E  +++   Q  W+ +    + 
Sbjct: 220 ------YDLFQMVREEEHAMLNDTLHMVREGVLGQAWCELPLKSVH-QLDWLRLSFSQIH 272

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D+
Sbjct: 273 GDKNTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---QVRDD 326

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   V  ID+D+++ IN+V G   GD +L  L  R+ +L++  DI+ARL G+ FG IL+ 
Sbjct: 327 MPTCVAFIDVDQFQVINNVSGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG-ILMH 385

Query: 624 ENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +N       A  +   +A        R   V+ S+G A    S      ++  A+ A  
Sbjct: 386 YSNVDSAQHIANRICTQLATHEFIWENRCHNVSVSMGIAKLDKSAADIYTVMSQADAACR 445

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VG 737
            AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L   E  + 
Sbjct: 446 LAKDKGRNGWHLYSAKDPKMTRLYTEMMASVDIVSALALNQFELYFQIITPLNRRESGLH 505

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LE L++   P    +S + F+  AE   +   ++L++++ + +   S         + + 
Sbjct: 506 LEILLRMVQPNGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGSSHLAIWQQLDL-VS 564

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+++  L D+E    ++  +        ++ +  +E+  +   E++  L+  LR +   
Sbjct: 565 VNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLEQATKLIEVLRPLNCQ 624

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L LDDFG   S  +YL  +  D VK +G  +          AI+++I  + +++   IIA
Sbjct: 625 LALDDFGAGFSSFAYLKRLNVDFVKIDGQFVLNICEDPADQAIVKAICQLGQDMGFDIIA 684

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +       +L  +G DY Q   +  P   + +   L  
Sbjct: 685 EFVESPEIGLKLQMLGVDYAQGYAINKPTRLSDLTSGLSR 724


>gi|320334334|ref|YP_004171045.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Deinococcus maricopensis DSM 21211]
 gi|319755623|gb|ADV67380.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Deinococcus maricopensis DSM 21211]
          Length = 917

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/584 (21%), Positives = 225/584 (38%), Gaps = 43/584 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I   L      Q +      Q   +    + +   D     + T P    +LGL+  
Sbjct: 358 AGRIAAALDNALLYQDVVERASGQEAVMEALTEGLLILDEDGTVILTNPSAPQLLGLSPT 417

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-----------FRVRAADNQF 492
           SM G              D     LD  +      +  E            R     +  
Sbjct: 418 SMIGVPIA----------DLVGATLD--LDGAPTPVTAEDIVGLPNALDLVRGVDTPSGR 465

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            W  +  RP+      +   +    D+T+  +    ++  A  D+LTG+PNR++  + L 
Sbjct: 466 RWFKLGARPLQQGGRQLT--VCTFADVTDAIERERRLVHLAHHDDLTGLPNRRALREHLQ 523

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L       N   ++ ++D+  +K +ND  G   GD +L++  R +        ILAR 
Sbjct: 524 RAL------HNGPCSIALLDLQGFKGVNDTYGHDFGDQLLIAAARALQAAAPPGAILARP 577

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F ++L         A        ++++P+ +       T + G+A           
Sbjct: 578 GGDEFALLLCG---PHDWAATWERWLDALSVPLRVGGTAWRTTVNAGYAVAPEDGTDVRN 634

Query: 673 MLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           +L  A+LA   AKH                  R  +++ L +A++  EL +   PI+ + 
Sbjct: 635 LLAAADLAQRAAKHALQPLAPFRAEYRQAIERRTDLEQHLRVALQRHELRVALQPILHVH 694

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D +++G EAL +W  P    +S +EF+ +AE   +I  +   M     R +         
Sbjct: 695 DLQVMGYEALARWIRPDGQFVSPAEFIAVAESTDLIHPLGRQMAHLALRAL---TRPGVP 751

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + IN+++  L      E + A +      P+R+ L  +ES V+ +   +R  L  L
Sbjct: 752 EHTCVTINVSAVQLGRAHYHEELTAQLRAANVPPNRLILEVTESAVINDQPTARRNLLAL 811

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
            + G+ + LDDFG   S L  L  +PF  VK +  LM  S  +    LR+II +A     
Sbjct: 812 AETGVHIALDDFGHGYSSLKLLQMLPFTIVKIDAELMR-SGMRDPTFLRAIIQVASATGA 870

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL----GFNSILK 951
           +++A+ +  +  ++ L  +     Q   +  P       +++ K
Sbjct: 871 SVVAEGVETDEQLRTLRDLNVPLAQGYLLGRPQLVEFPPDTLTK 914


>gi|156972905|ref|YP_001443812.1| cyclic diguanylate phosphodiesterase [Vibrio harveyi ATCC BAA-1116]
 gi|156524499|gb|ABU69585.1| hypothetical protein VIBHAR_00583 [Vibrio harveyi ATCC BAA-1116]
          Length = 848

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/432 (25%), Positives = 202/432 (46%), Gaps = 13/432 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K S + +      D+LT + +RQ  ++ ++  L  S        ++ +I I+K++ IND
Sbjct: 416 LKASFKALREQLEFDSLTRLYSRQGLIE-VSETLTHSGQ-----GSLYLIGINKFRDIND 469

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G   GD +L+ +  R+ + L     LAR+ G+ F + + + ++   I+     +++ +
Sbjct: 470 SIGHHKGDQLLIHIAERLKQQLHDEATLARIGGDEFAVFMPTTHSDEDISLMERRLQQLL 529

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A P  L   E  V         T  + T S  L+NA +A+ +AK      V  +      
Sbjct: 530 AAPFILDG-ETVVVKISVGVVRTQPEQTMSLWLRNASIALSYAKQDSRTSVCHYSPEMAS 588

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +   +   ++N E    Y PII L    I G EAL +W H + G IS  +F+ 
Sbjct: 589 ASKFRTQMLAKIQTGIDNREFVPFYQPIIDLATGNICGAEALARW-HSESGMISPLDFIP 647

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALI 818
           IAEE  MIK I   +L +   D     D    P    + +N++   L      E +  ++
Sbjct: 648 IAEESGMIKTIGQQILFQACSDTRKAIDNKQWPEDFQLHVNVSVHQLSSPNFVESVAKIL 707

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            KT  S + + L  +ES ++ +   +   L +LR +G+ + +DDFGT  S L+YL  +PF
Sbjct: 708 LKTGLSATNVTLEITESRIIDSAPTTLDNLIKLRDMGLGIGIDDFGTGYSSLAYLHALPF 767

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + + +   T++    +++ +II + K ++  ++A+ +   +  + L  +GCD +Q
Sbjct: 768 TCLKIDRTFINRLTKENLDSSVVAAIINITKGMKANVVAEGVETAVQAQLLRSLGCDQVQ 827

Query: 937 DSHVASPLGFNS 948
             + +  +    
Sbjct: 828 GFYYSRQMAMEE 839


>gi|332716944|ref|YP_004444410.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Agrobacterium sp. H13-3]
 gi|325063629|gb|ADY67319.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Agrobacterium sp. H13-3]
          Length = 589

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/534 (21%), Positives = 219/534 (41%), Gaps = 21/534 (3%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD--NFRTILDSFVGYRRGRLQYEFRV 485
           +        + G     + G    +L     + ++  + R  +++        L    R 
Sbjct: 62  LYVNKAFEHLTGYPRNEVVGKDCRYLQGNERDQQEVVHIRAAIEAA-----EPLDSTLRN 116

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D    W  + +RP     G+ L Y+GI  D++  +++   +   A  D  TG  NRQ
Sbjct: 117 YRKDGSAFWNSLSLRPAW--VGEELFYVGILRDVSAIRQAHTALDRVANLDATTGCLNRQ 174

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +F   +    +  AT+    P V+ +D+  +   N   G  VGD +L    RR+ ++   
Sbjct: 175 AF---ILATEERFATNAKATPLVVKLDVIGFHDFNTGYGFEVGDALLYETGRRLRDVGAA 231

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              + R+  N F +      +         A+  S+A    +    +++  +IG+A    
Sbjct: 232 Q--VGRMGANEFALAFE-LTDGSSADTIVAAVSASLAADFVVPGASVSLRFAIGYAVGQP 288

Query: 666 SKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
                  +++NA +A++ AK    GG            S RV +  +L +AV N E    
Sbjct: 289 RAR-PISLIRNAGIALWAAKSAPLGGPRRFRDSDHEQASRRVRMTRELKVAVANDEFVYH 347

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           +   + L   E VG EALI+W+HP +G+     F+  AE   ++  +    L  +A    
Sbjct: 348 FQRQVDLPTGEWVGAEALIRWNHPLFGSQLPGSFVETAERSGLLLDLTERSLTTVAAYAR 407

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                     +   +N+++ + L +++ E +  ++  T   P+ + L  +ES+ + +   
Sbjct: 408 RINAH-RDKALRFAVNVSAGEFLQHDMAEMLDRVLCLTKADPAWLTLEITESMFLSDTPG 466

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRS 901
                 RLR+ G+ L++DDFGT  S L  L   P   +K + + ++       R  I+++
Sbjct: 467 VMDAFQRLRQSGVGLSVDDFGTGYSNLRSLETFPVTEIKIDRTFISELATRPSRRVIVQA 526

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I + + +  T++A+ +  E   K L  MGC   Q      P+        L  
Sbjct: 527 VIDLGRALGLTVVAEGVETEAQRKMLREMGCPVGQGYLFGRPIDAEVFAASLAR 580


>gi|304411018|ref|ZP_07392634.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|307301859|ref|ZP_07581617.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|304350553|gb|EFM14955.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|306913897|gb|EFN44318.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 744

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/549 (19%), Positives = 228/549 (41%), Gaps = 42/549 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  + +     G A   +               + + R  L+  +  R+ R++ +
Sbjct: 220 ISHQIIAASGEFEPYFGYALQQLE--------------QQHIRAQLELCLSRRQSRIEND 265

Query: 483 FRVR-----AADNQFHWMIIRIRPMSNSNGDILRYIGI-----ANDITEQKKSLEGILCN 532
           F         A   +   +   RP+  +  +++R   +      + ++     +  +   
Sbjct: 266 FTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVS----LMSQLDKI 321

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF+D L  IPN    +  L  +L     +   +  +++IDIDK+   N V G   G+++L
Sbjct: 322 AFEDPLVKIPNLNVLIRTLEGVLAEDIRE---KFNLLIIDIDKFSDFNRVFGSPQGNEML 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + E      ++ARL  ++F ++             A  + +    P    + +I
Sbjct: 379 KHVASCLREHFDACVLVARLKDDKFAVLGPKT------LVTADIISRLFIQPYQQGKSKI 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
           TV  S        +  T+ + +    +A+  AK  G     +++ ++  +      + + 
Sbjct: 433 TVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQANDDNVAYHFELLQS 492

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  ++  +++++   P + +   E+VG+EAL +W  P   N+   +F+ IAE   +I  +
Sbjct: 493 LQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQL 552

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +  +  + + +  +      + + +N+++       + + ++  I+     P +I++
Sbjct: 553 GEQLFVQSCQALCALNEA-GYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEV 611

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ M N E  R  L  LR I I + +DDFGT  S L+YL  + FD +K + S +  
Sbjct: 612 EVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFDRIKIDKSFIDN 671

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            T      AI+ SII + +     +IA+ +  +   K L+  GC   Q    A P+    
Sbjct: 672 VTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQGYFYAKPMPLPE 731

Query: 949 ILKLLKERF 957
           +L  LK   
Sbjct: 732 LLTWLKNYQ 740


>gi|89055091|ref|YP_510542.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Jannaschia sp. CCS1]
 gi|88864640|gb|ABD55517.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Jannaschia sp. CCS1]
          Length = 978

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/619 (21%), Positives = 262/619 (42%), Gaps = 35/619 (5%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           + +   + + +++     G ++++ +    +++H        + +    +R   A+    
Sbjct: 357 LELAGDIHHRLLRSRAENGDLVMLRIDTTEIVRHR-------RALEKTQDRLISAINAYP 409

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D    +D  ++ V   P  A  +     S++  I      +             S   + 
Sbjct: 410 DPFAIYDRDQNLVIWNPAYAQSMTDDPDSLYPGISLKELLLGAARCGRIPVSGMSIEDWV 469

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE---QKKSLEGIL-- 530
                 +     A++         R + +   +    +    +ITE   Q++++E     
Sbjct: 470 EEYYSEDLLKPGAEDFEFVGDTHFRMVRSRAENEEHVVLSL-NITEVVRQRRAVEEYAKK 528

Query: 531 ---------CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
                      A +D LTG+ NR+    +    +   A +      +  ID+D++K+IND
Sbjct: 529 LEKANAAITRQAQRDELTGLGNRRYLGLKFDAFVARRARNGGEIAAL-HIDLDRFKQIND 587

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G A GD VL+  ++R+  L+   D++AR+ G+ F +++     S +       +  ++
Sbjct: 588 TMGHAAGDKVLLETSKRVQRLIGPDDVVARIGGDEFVVLIYEPTVSQRPETLTGVLLDAL 647

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           + P     RE    ASIG A    S     E+L N+++A+Y AK RG + V SF  S   
Sbjct: 648 SRPTQFEGRECRFGASIGLARTPLSG--VDELLTNSDVALYKAKRRGRSQVSSFDRSDLE 705

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  + +D+   +E  E    Y P +      ++GLEAL +WDHP+ G ++ S F+ 
Sbjct: 706 ELRCNKTLADDILRGIEGGEFVPFYQPQVDAKTGRVLGLEALARWDHPQKGVLAPSHFLQ 765

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IA +L +   I+  + E    +  +       PP  +  N++++ + D+   + +   + 
Sbjct: 766 IATDLNVAADIDRMIFEAAIDECSNTFQALGQPP-TLSFNVSARRVSDDN-IQDIAGRVR 823

Query: 820 KTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    P ++     E++ +    +     L RLR++GI L +DDFG+  + +  L  I  
Sbjct: 824 QY---PGQVCFELLETIFLEEEGDEFLNQLDRLRELGIGLEVDDFGSGRASVIALQRIAP 880

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +  L+       K + +LRSI+ +  ++E  + A+ +        L   GCD +Q
Sbjct: 881 DRLKIDRRLVAPIAHCAKGVRLLRSIVEIGLSLEMGVTAEGVETREQADILAEFGCDRLQ 940

Query: 937 DSHVASPLGFNSILKLLKE 955
               A P+GF  +   ++ 
Sbjct: 941 GYLFAKPMGFADMAAFMER 959



 Score = 59.2 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                     G A   + G        +H   D   F++ +D  +   R +   + ++  
Sbjct: 40  YVNAAFTAQFGYAPDDILGKTAA---TLHDEEDWAGFKSTVDGHIAAHRTQFSTDAKMVR 96

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           AD    W    +  + N +           DI+  K++ 
Sbjct: 97  ADGSRFWASASLIVVENEDEGGRYVCATFRDISNLKEAE 135


>gi|83644929|ref|YP_433364.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83632972|gb|ABC28939.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 824

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/472 (23%), Positives = 218/472 (46%), Gaps = 22/472 (4%)

Query: 499 IRPMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           I  + +SN ++ R      ++ + Q+  +E +   +  D LTG+PNR +F   L   +  
Sbjct: 335 IAWVFDSNDELSRLSAEFEEMASAQRGQIERVKGLSNLDPLTGLPNRTAFSGILEKAVSY 394

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR------ 611
           +   D     V+ IDID +K+IN+  G  VGD++   +  RI   L+  D +AR      
Sbjct: 395 TRRQDQA-LAVLFIDIDHFKRINETYGSKVGDELFRQVADRISASLRLSDEVARQVMTEF 453

Query: 612 ---------LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                      G+ F ++L     + +++  A  +  S   P  L E  ++++ SIG A 
Sbjct: 454 GDMDRVLVRTGGDEFTVLLRDIRKAHQVSLVASRILASFDHPFTLDEHSVSMSVSIGIAL 513

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSEL 720
           +     T   +LK+A+LAMY AK  GG     F    ++    R+ ++ D+   +   E 
Sbjct: 514 YPVDGQTPELLLKSADLAMYEAKQAGGACFRFFTHALNTSAEKRLQLERDIQDGLIVKEF 573

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            +   P + L        EA+ +W+HP+ G +   +F+ +AEE   +  +   +LE +  
Sbjct: 574 TVYLQPRVNLRTGIATEFEAVARWNHPRLGVLLPEQFISVAEESGHLIELGKQLLEAVCN 633

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I + +       + +  N+A   L  NE+   +   + +       ++L  +E ++   
Sbjct: 634 AIKTLQQNVGN-DVKVSFNLAPHHLRMNEVLSEISNCLERYGLPGETLELEITEDLLKAE 692

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            + + +LL RLR+ G+S+ LDDFG+  S LS L   P DT+K + + M      ++   +
Sbjct: 693 NKDALILLNRLRERGVSVALDDFGSGDSSLSALRRAPIDTLKVSPNFMQELYVDKESPVV 752

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           LR+I  +A+++E  ++ + +     +++   +G D  Q  +++       + 
Sbjct: 753 LRAICDLARSLELKVVVQGVESRAQVEQALTVGADQAQGHYLSEAAPVEDVR 804


>gi|86740327|ref|YP_480727.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86567189|gb|ABD10998.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 692

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 201/480 (41%), Gaps = 49/480 (10%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K      L     D LT + NR   ++   + +       N    ++++D++++ ++ND 
Sbjct: 198 KALFREGLLQNRSDPLTRLANRGGTMEIGQSAVAKINAAGN-EAVLVLVDLNRFHEVNDA 256

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----------------- 625
           LG   GD +L  +   +  L   P  + R  G+ F ++                      
Sbjct: 257 LGHLGGDQLLRMIAETLPTLTPRPVFVGRAGGDEFALVFRGPEIIPAPPASSVSSASPPS 316

Query: 626 --------------------------NSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
                                      + +       + + I  P  +   ++ V AS+G
Sbjct: 317 STSSASPVSLGPSGAPAVRGPLPAAIAAGRRRTLGRRVLRQIQGPFQVCGVDVEVDASVG 376

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRSDRVMIKEDLCLAVENS 718
            A       T + ++  A+ A+  AK  G +       ++  R + + +   L  A+   
Sbjct: 377 IAVAPRDGATMATLMSCADAALLRAKRVGESVGLWDAGIAGVRPEEIALNAQLRAAIGRD 436

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL L Y P+       IVG EAL++W HP  G +   EF+ IAE   +I  +  ++L+  
Sbjct: 437 ELVLYYQPVQSARTGGIVGAEALLRWRHPSRGLLPPGEFLPIAERSPLIADLTRWVLDEA 496

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R   +W        + + +N++ + L+ ++L   +   I+    +P  + L  +ES ++
Sbjct: 497 LRQCAAWDA--GGLHLPVSVNLSPRMLVIDDLPRVVSDSIAAHRLAPDVLTLEITESALV 554

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
             P R+  +LG+LR  G++L+LDDFGT  S +  L  +PFD VK +   +T         
Sbjct: 555 TQPARAATMLGQLRSHGVALSLDDFGTGYSSMEILKTLPFDEVKIDRGFVTDVRGSLPDA 614

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           AI+RS++ +   +   ++ + I  E  +  +   GCD +Q   ++ PL    + +LL+ R
Sbjct: 615 AIVRSVLDLGHRLGLRVVGEGIEDERTLTMMVDFGCDLLQGEAISPPLPAERVRELLRTR 674


>gi|323491361|ref|ZP_08096546.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323314487|gb|EGA67566.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 908

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/578 (21%), Positives = 245/578 (42%), Gaps = 18/578 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++Q +      ++    D E++  A+  S          R  V   P   ++L      +
Sbjct: 338 LVQTLAINTSAAKEQLHDAEQKFTALYQSRTTAILLIRARVIVDINPTALSLLDYQRDDL 397

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L  +  +       I   +  +++G+ Q+E ++  +  +     I I  +   
Sbjct: 398 IDQP---LDKLCPDSDQPECQIDGMYQSFKQGQTQFEAQMLTSSGEEIDCKIEISLIQ-Y 453

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G     + +  D+ E K+  + I     +D+L+G+ NR+S +++   +L  +      R
Sbjct: 454 QGQPALMLSVV-DVREHKQQAKMIEDLVERDHLSGLWNRKSIMEKARNLLASAPN----R 508

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            + M + I     I++V G    D  +  +    G+ L     + R+S + F +++ +  
Sbjct: 509 FSFMYVTIPNLSHISEVYGHQTFDASMELIANLFGDTLAPY-PVGRISEHEFLVLIPNRL 567

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA--ELAMYH 683
              +    A  M +++     +   E+ +   I F S   +      +++ A   +A   
Sbjct: 568 ECEQATGSAAKMIEALLEKQTVENVELDLKCDIAFVSPGITHEPLDILIQAAIHSIATDK 627

Query: 684 AKHRGGNHVESFRVSSF-RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           A  R  N +             + IK DL  A+ N ++Y VY PI+     EI G EAL 
Sbjct: 628 ANRREVNVITIDSDMFDSAKTAIAIKRDLSGAIANGDIYSVYQPIVDTGSGEINGFEALA 687

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI---ISWRDQANMPPIFILIN 799
           +W H ++G IS   F+ +AE+  +I A+   +LE+  + I      R +     + + +N
Sbjct: 688 RWQHQQFGFISPGVFIPLAEQSHLIIALGESILEQACQFIESVNKLRSENGQTMLTMHVN 747

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++      EL + +  LI K    P ++ +  +ES++MG+       + +++ +G+   
Sbjct: 748 LSASHFYHTELPKYLAMLIDKYQLQPGQLVIEVTESMLMGDEAEVTSRMEQMKSLGLLFA 807

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S  S L   P D VK + S +        A  ++R+I  MA+ +  T +A+ 
Sbjct: 808 LDDFGTGYSSFSTLCSFPLDIVKLDKSYIDQIESNDRAKSLVRNIANMAQELGLTTVAEG 867

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +      ++L     + IQ  +   P+  N +LKLLK 
Sbjct: 868 VETASQARKLKSWNIEEIQGYYFYKPMPSNQVLKLLKS 905


>gi|284052549|ref|ZP_06382759.1| hypothetical protein AplaP_13858 [Arthrospira platensis str.
           Paraca]
          Length = 389

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/346 (30%), Positives = 178/346 (51%), Gaps = 5/346 (1%)

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I+L   NN  +I+  A  ++  +  PI L E+E+  T SIG A    S     E+L
Sbjct: 1   DEFAILLDDLNNLNQISQTAQNIQSYLQQPIVLGEQEVFSTVSIGIAISNVSYGNGKEIL 60

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++A+ A+  AK +G      F   +     DR+ ++ DL  A+E  EL L Y PII L  
Sbjct: 61  RDADTALSQAKSKGKACHVIFNPTMHRQAWDRMQLENDLRHAIERQELQLHYQPIISLET 120

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM- 791
            E+VG EALI+W+HPK G +S S+F+ IAEE  +I+ I  ++L    + +  W+      
Sbjct: 121 LEVVGCEALIRWEHPKRGWVSPSQFIPIAEETGLIQPIGEWVLRSACQTLHRWQLMFPDG 180

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P F+ +N+++  L + +L   +Q+++ +T   P R+KL  +ES +    E     +  L
Sbjct: 181 QPAFMSVNLSTYQLTNPQLVNKVQSILEETGCDPCRLKLELTESTIAEYAEIVVPQMREL 240

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNI 909
            ++GI L +DDFGT  S LS L + P  T+K + S + G  E   ++ I  +I+ +A  +
Sbjct: 241 SQLGIKLCIDDFGTGYSSLSRLYHFPIHTLKIDRSFIEGIDESHDQLKIAYAIVNLAHTL 300

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +IA+ +     +  L   GC   Q    +  +   ++ K L +
Sbjct: 301 GLEVIAEGVETPEQMAVLQAWGCQLCQGYLFSKAVDSQNMDKFLSQ 346


>gi|221128047|ref|XP_002155364.1| PREDICTED: hypothetical protein, partial [Hydra magnipapillata]
          Length = 451

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 161/367 (43%), Gaps = 6/367 (1%)

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND +G   GD +L+   RR+   ++  D +AR+ G+ F +++        +     
Sbjct: 1   FKEVNDTMGHDAGDLLLMEAARRLRACVREHDTVARMGGDEFTLLITELETDSHLEHLLQ 60

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +++ P  L    + V+ASIG             + KNA+ AMY AK  G N    F
Sbjct: 61  KLLHTLSSPFELHRERVFVSASIGVTLCPDDGSEVEALYKNADQAMYEAKGAGRNRFSFF 120

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                     R  I  DL  A+   +  L + PI+ L   ++   EAL++W HPK G IS
Sbjct: 121 TPALHEAAVQRARITNDLHDALAQQQFELHFQPIVDLSSGQVRKAEALLRWRHPKRGMIS 180

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+ +AE   +I  I  ++   ++R ++ WRD  + P   I +N +          E 
Sbjct: 181 PADFIPVAEASELIVEIGDWVFSEVSRQLLVWRDTLH-PHFQISMNSSPVQFRRRCPAEK 239

Query: 814 -MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                +         + +  +E +++         L   R  GI + LDDFGT  S L+Y
Sbjct: 240 SWVKRLEAMGLPGMSLVVEITEGLLLETNASVSEQLLEWRDAGIQVALDDFGTGYSSLAY 299

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S + G        +  ++++ MA  +   ++A+ +        L   
Sbjct: 300 LQQLDIDYIKIDKSFVQGLDPGGTQFILCKAMVVMAHALGLRVVAEGVETSQQRDLLIEA 359

Query: 931 GCDYIQD 937
           GCD+ Q 
Sbjct: 360 GCDFAQG 366


>gi|148258845|ref|YP_001243430.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146411018|gb|ABQ39524.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 592

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/563 (22%), Positives = 237/563 (42%), Gaps = 21/563 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                     ++       V      +   D     +      A  LG A+ S  G    
Sbjct: 12  EAREGLGETEAELRFLRSIVSQLPSGITVQDEHGRFLLVNDTAAIQLGAAANSADGIAAP 71

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                H++ R   R      +G  R  +  E     ++     ++   RP+    G+   
Sbjct: 72  -----HLDVR---RATCRELLGRGRVVIAEEK--VTSERGPQTLLTAHRPV--QIGEQRL 119

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  + DITEQK+  + +   A+ D LTG+P R+    R  T++     D   R  +  +
Sbjct: 120 LLSSSADITEQKEFEDQLFRAAYYDELTGLPMRRVVEHRADTLVRRGRVDG--RFALAFL 177

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K IND  G A GD +LV L +RI   L+  D+L+R+SG+ F ++L     + ++A
Sbjct: 178 DLDNFKYINDYYGHATGDALLVELAKRISRDLRESDLLSRISGDEFLLLLHPIERTEEVA 237

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           +F   M   +  P  +   E+  +AS+G + +     +   + +NA+LAMY  K+     
Sbjct: 238 EFLQGMLDRLNAPFFIDGAEVFASASVGVSLFPEHGASYDVLRQNADLAMYRVKNSDKGT 297

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F  +        +  ++ L LA+        +   + +  EEI G+EAL++    + 
Sbjct: 298 LAFFSSAMEHEALARMKVEQSLRLAILEKRFCCAFQAKVDIRTEEIKGIEALVRLRDNEG 357

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
              +   F+ +A EL +I  +   +L+ I + I    +        I IN+A+K   + +
Sbjct: 358 VIQAPGAFINLAVELGLIDELTHLVLDEIVKSIDLINETFGHET-TISINVAAKQAANPD 416

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                   +  T + P R  +  +E   +        ++  LR IG+ +++DDFG   S 
Sbjct: 417 FMRPFARALESTGF-PKRFMVEVTEDAFVTRSHFQDEIVPLLRGIGVGISIDDFGIGYSS 475

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L  I  D +K + S +T      +   ILR+I  +++ +  T+IA+ I    ++  L
Sbjct: 476 LSALADITADEIKIDRSFITDIHKRPRSQGILRAIESLSEALGMTVIAEGIESFEELAYL 535

Query: 928 TRM-GCDYIQDSHVASPLGFNSI 949
                  Y Q  + + P+    +
Sbjct: 536 QAATKIRYAQGYYFSRPIFLEEL 558


>gi|225388357|ref|ZP_03758081.1| hypothetical protein CLOSTASPAR_02093 [Clostridium asparagiforme
           DSM 15981]
 gi|225045580|gb|EEG55826.1| hypothetical protein CLOSTASPAR_02093 [Clostridium asparagiforme
           DSM 15981]
          Length = 860

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/452 (23%), Positives = 214/452 (47%), Gaps = 18/452 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           IL  +    ++ E    +         D LTG+ +++ F  +   +L     +   R  V
Sbjct: 114 ILHRVASIINLRETAAMVNQFQ----YDRLTGLYSKEFFYRKAKELLA---QNPQKRYDV 166

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  DI+ +K INDV GI  GD +L  + R    ++    +  R + ++F  +L       
Sbjct: 167 ICSDIENFKLINDVFGIPAGDRLLCGIARLYTRMVNGRGLCGRFNADQFVCLL------E 220

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              +++  M ++  + I+ +    +V+   G  +     I   +M   A LA    K + 
Sbjct: 221 HSWEYSNEMFRNAEIEISAMSNTRSVSMKWGVFAVVDRTIPFEQMCDRALLAARSIKGQY 280

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           G +  ++             I + +  A++  +  +   P  R+ D ++ G EALI+W+H
Sbjct: 281 GKYFATYDDKLRNKLLREQAITDGMEAALKEGQFVIYLQPKYRIQDYQLAGAEALIRWNH 340

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+WG  S +EF+ + E+   I  ++ F+ +R    + SW D   +P I + +N++  D+ 
Sbjct: 341 PEWGFQSPAEFIPLFEKNGFITKLDQFVWDRTCAALRSW-DDKGLPAIAVSVNVSRADIY 399

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +  L + +   ++K   SPSR+ L  +ES    +P +    +  LR +G  + +DDFG+ 
Sbjct: 400 NANLTDFLMNTVNKYGLSPSRLHLEITESAYTEDPNQIIETVVSLRNLGFIIEMDDFGSG 459

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ L  +P D +K +   +   T    +  ILR I+ +A+ ++ +++A+ +     +
Sbjct: 460 YSSLNMLNQMPLDILKLDMKFIQSETAKPNKQGILRFIMGLARWMKLSVVAEGVETPEQM 519

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + L  +GCDY Q  ++A P+  +   +LL+E+
Sbjct: 520 ERLREIGCDYAQGYYMARPMPCDQFEELLREQ 551



 Score =  133 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 71/176 (40%), Gaps = 9/176 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+ ++    +   A +D LTG+ NR+ F   + ++       ++    + + D+D  K I
Sbjct: 692 TQTREWSLELQQEASRDYLTGLLNRRGFQAAMDSL-----RKEDAPLALYLFDLDNLKSI 746

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G A GD  +    + +    +  DIL+R  G+ F +++               + +
Sbjct: 747 NDTFGHAEGDRHIRQFAQLLRSHTRESDILSRYGGDEFVVVMKQMKTDEAALKKGEEICR 806

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +I      +     + A        +   +S E+++ A+ A+Y AK         +
Sbjct: 807 AIRE----MGAGGNLAACTAGVVRRNELDSSEELIERADQALYQAKKNNKGGCSLW 858


>gi|303327617|ref|ZP_07358058.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862557|gb|EFL85490.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Desulfovibrio sp. 3_1_syn3]
          Length = 699

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 213/540 (39%), Gaps = 31/540 (5%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           V        + G +   +    ++         ++      +     R   + +  + R 
Sbjct: 168 VEANEKFTQLFGQSDYLLDKQAQS---------KNRAVLAENHAAMRRGESVNFVTQARD 218

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE-------QKKSLEGILCNAFQDNLTG 540
            D    W+ +    M   N + + Y+ +  DI+E       Q+++   +   AF D +T 
Sbjct: 219 RDGNNAWLQVSGECMDWENNNPV-YLCVYIDISELLEQRELQRQANRQLERLAFVDPVTS 277

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
             NR SF       +  +         ++ +DI K+K IND  G+ +GD VL      + 
Sbjct: 278 GRNRTSFEIDAGGAVRAALP---GTYVLVWLDIQKFKVINDFFGVEMGDRVLRHCYETVE 334

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             L+  + +ARL+ + F ++L +      +      + +         ER   ++ S G 
Sbjct: 335 AHLENGEYVARLAADGFNLLLRTAGEKE-LEARLNRIAEDANNFEPFRERNYLLSFSAGI 393

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI-----KEDLCLAV 715
                  ++  ++   A +A   +     + + +    S +     +     +  +  A+
Sbjct: 394 YPIDDPVLSLVKIQDRANIARKKSGGSEEHCLCTCLFYSEQDRLRSLREKEMENRMHDAL 453

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              E  +   P   L    I G EAL++W  P+ G I  ++F+ + E+   I  ++L + 
Sbjct: 454 GRDEFVVYLQPKQSLKKAAIGGAEALVRWRAPE-GLIPPNDFIPLFEQNGFIVDLDLHVF 512

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E++   +  W D   + P+ + +N++   L D +  E  + +       P  +++  +ES
Sbjct: 513 EKVCAMLRKWLD-NGVTPVPVSVNMSRVHLADPQFLERYETIRRAYDVPPELLEIELTES 571

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           +V  NP      + R+R  G   ++DDFG+  S L+ L  +  + +K +           
Sbjct: 572 LVFENPHLLVQFIERIRAHGYHCSIDDFGSGYSSLNLLKDMNVNVLKLDRVFFASQEADN 631

Query: 896 ---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                ++ S+I +AK +    +A+ +     ++ L + GCD +Q    + P+      ++
Sbjct: 632 ARERTVIVSVIDLAKKLSMGTVAEGVETTRQVEFLQQAGCDMVQGYVFSRPVPLAEFEQM 691


>gi|160874087|ref|YP_001553403.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160859609|gb|ABX48143.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|315266320|gb|ADT93173.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS678]
          Length = 744

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/549 (19%), Positives = 228/549 (41%), Gaps = 42/549 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  + +     G A   +               + + R  L+  +  R+ R++ +
Sbjct: 220 ISHQIIAASGEFEPYFGYALQQLE--------------QQHIRAQLELCLSRRQSRIEND 265

Query: 483 FRVR-----AADNQFHWMIIRIRPMSNSNGDILRYIGI-----ANDITEQKKSLEGILCN 532
           F         A   +   +   RP+  +  +++R   +      + ++     +  +   
Sbjct: 266 FTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVS----LMSQLDKI 321

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF+D L  IPN    +  L  +L     +   +  +++IDIDK+   N V G   G+++L
Sbjct: 322 AFEDPLVKIPNLNVLIRTLEGVLAEDIRE---KFNLLIIDIDKFSDFNRVFGSPQGNEML 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + E      ++ARL  ++F ++             A  + +    P    + +I
Sbjct: 379 KHVACCLREHFDACVLVARLKDDKFAVLGPKT------LVTADIISRLFIQPYQQGKSKI 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
           TV  S        +  T+ + +    +A+  AK  G     +++ ++  +      + + 
Sbjct: 433 TVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQANDDNVAYHFELLQS 492

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  ++  +++++   P + +   E+VG+EAL +W  P   N+   +F+ IAE   +I  +
Sbjct: 493 LQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQL 552

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +  +  + + +  +      + + +N+++       + + ++  I+     P +I++
Sbjct: 553 GEQLFVQSCQALCALNEA-GYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPPGQIEV 611

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ M N E  R  L  LR I I + +DDFGT  S L+YL  + FD +K + S +  
Sbjct: 612 EVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFDRIKIDKSFIDN 671

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            T      AI+ SII + +     +IA+ +  +   K L+  GC   Q    A P+    
Sbjct: 672 VTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQGYFYAKPMPLPE 731

Query: 949 ILKLLKERF 957
           +L  LK   
Sbjct: 732 LLTWLKNYQ 740


>gi|225570707|ref|ZP_03779730.1| hypothetical protein CLOHYLEM_06808 [Clostridium hylemonae DSM
           15053]
 gi|225160534|gb|EEG73153.1| hypothetical protein CLOHYLEM_06808 [Clostridium hylemonae DSM
           15053]
          Length = 758

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 90/438 (20%), Positives = 200/438 (45%), Gaps = 16/438 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +KS E I   A+ D LTG  NR  F+  +  ++  S         +++++I+ +K +N+ 
Sbjct: 314 RKSREEIARLAYTDVLTGSDNRNKFILEMQRLIKESG-----HYAMVLLNINGFKFVNEF 368

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   G+ +L  +   + E ++  ++  R + ++FG++L    +  K++     +++ I 
Sbjct: 369 YGYDAGNMLLRHIAAVLAENVREHELCYRDNADQFGMLL-KYRSREKLSVRLKMIQEQIH 427

Query: 643 MPINLLEREITVTASIGFASWTSSKI-----TSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                  ++  +  + G      + +         ++  A LA+   K    + +  +  
Sbjct: 428 KFRLNSNQDYHILCNFGVMIIEKNGMSDVNADFDTVMNGALLALESVKGNEMDSIAFYDS 487

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +          I+  +  A+E  E  +   P   L D  +   EAL++W       +   
Sbjct: 488 ALHEKAARRTEIENRMWSALERREFVMYLQPKFSLKDGVLHSAEALVRWMPGDGKMLYPD 547

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ + E+   I  ++++MLE   R +  WRD+     + + +N +     D +    ++
Sbjct: 548 EFIPVFEQNGFITRLDMYMLEEACRCLAGWRDK-GYAAVPVAVNQSRIFFYDAKYLNKLE 606

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++      PS I L  +E+V M N E+ + ++ RL  +G  +++DDFG+  S L+ L  
Sbjct: 607 QIVRHYEIDPSLILLEVTETVAMNNLEQIKDVIARLHGMGFKISMDDFGSGYSSLNTLRE 666

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +   ++  ++  +  AI+R++I +AK++    +A+ I  +  ++ L  + CD
Sbjct: 667 LDVDEIKLDREFLSTQSDTTRGEAIIRNVIHLAKDLCAATVAEGIETKQQLEFLKSLSCD 726

Query: 934 YIQDSHVASPLGFNSILK 951
             Q  + + P+  +  L+
Sbjct: 727 IGQGYYFSKPVPADIFLQ 744


>gi|146291759|ref|YP_001182183.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|145563449|gb|ABP74384.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
          Length = 735

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 228/568 (40%), Gaps = 23/568 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +I   +     +Q + +   +               D               L +  G
Sbjct: 160 AVMIGSAMELTRIAQNMLASEYKYRQVFNQLPLACALLDKHNQLAMLNKVALQTLPVQHG 219

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                  +    +   +       L        G+   E  +++   Q  W+ +    + 
Sbjct: 220 ------YDLFQMVREEEHAMLNDTLHMVREGVLGQAWCELPLKSVH-QLDWLRLSFSQIH 272

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                +   + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D+
Sbjct: 273 GDKNTL---VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---QARDD 326

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           +   V  ID+D+++ IN+V G   GD +L  L  R+ +L++  DI+ARL G+ FG IL+ 
Sbjct: 327 MPTCVAFIDVDQFQVINNVSGHQAGDKLLCQLALRLKQLVRKGDIVARLGGDEFG-ILMH 385

Query: 624 ENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +N       A  +   +A        R   V+ S+G A    S      ++  A+ A  
Sbjct: 386 YSNVDSAQHIANRICTQLATHEFIWENRCHNVSVSMGIAKLDKSAADIYTVMSQADAACR 445

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VG 737
            AK +G N    +     +  R+  +     D+  A+  ++  L +  I  L   E  + 
Sbjct: 446 LAKDKGRNGWHLYSAKDPKMTRLYTEMMASVDIVSALALNQFELYFQIITPLNRRESGLH 505

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           LE L++   P    +S + F+  AE   +   ++L++++ + +   S         + + 
Sbjct: 506 LEILLRMVQPNGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGSSHLAIWQQLDL-VS 564

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+++  L D+E    ++  +        ++ +  +E+  +   E++  L+  LR +   
Sbjct: 565 VNLSATSLGDSEFMNWLEMRLMTEPELVDKLCIEITETAAVSQLEQATKLIEVLRPLNCQ 624

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L LDDFG   S  +YL  +  D VK +G  +          AI+++I  + +++   IIA
Sbjct: 625 LALDDFGAGFSSFAYLKRLNVDFVKIDGQFVLNICEDPADQAIVKAICQLGQDMGFDIIA 684

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +       +L  +G DY Q   +  P
Sbjct: 685 EFVESPEIGLKLQMLGVDYAQGYAINKP 712


>gi|291537103|emb|CBL10215.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
 gi|291540337|emb|CBL13448.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 554

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/446 (23%), Positives = 191/446 (42%), Gaps = 17/446 (3%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +   K+S +  L     D+LTGI NRQ F  +   +LD S          + +DID+
Sbjct: 117 FRVMNAIKRSKQHFL---EYDSLTGIYNRQMFYQKTREMLDDSKDQ---TFAFIRLDIDR 170

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADF 633
           +K IN   G A GD +L  +   I  +L         RL+ + FGI +  E         
Sbjct: 171 FKMINSFYGAAEGDRLLRCMAHNICGVLSAYKTYTYGRLNSDVFGICVAVEK-EQDALLI 229

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +R+ +       E    +  S G       ++  S + ++A +A    K +  +H  
Sbjct: 230 AQKIREQVKKN---GELRCYLETSAGCYIIRDKEMEVSAIYEHAVIAAQECKGQYMHHEA 286

Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +             I  ++  A+E  +  + + P   L      G EAL++W  P    
Sbjct: 287 LYTEQMGKEMQREQQIINEMDTALEEKQFVVYFQPKYELDGYTPRGAEALVRWKKPDGTM 346

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  EF+ + E+   I  ++ ++ +++ + I +       P   I +N++  +L +    
Sbjct: 347 VSPGEFIPVFEKNGFIIKLDYYVWDQVCQLIATALRAGRKPD-PISVNVSRVNLYNPNFL 405

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  L+ K    P  + L  +ESV           +  L K G ++ +DDFG+  S L+
Sbjct: 406 ESLVNLVEKYRIPPEYLHLELTESVFSDTENVILNAVNYLHKAGFTILMDDFGSGYSSLN 465

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  I  D +K +   ++      +   IL ++I MAK ++  +IA+ +  +  ++ L R
Sbjct: 466 VLKDIDLDVLKIDMKFLSKGKDDGRGEKILAAVIQMAKALDMPVIAEGVEEKKQVQMLKR 525

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           +GC+YIQ  + A P+      +L ++
Sbjct: 526 LGCNYIQGYYFAKPMPQEDYERLARK 551


>gi|323491107|ref|ZP_08096297.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio brasiliensis LMG 20546]
 gi|323314654|gb|EGA67728.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio brasiliensis LMG 20546]
          Length = 781

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/479 (24%), Positives = 215/479 (44%), Gaps = 19/479 (3%)

Query: 485 VRAADNQFHWMIIRIRPM---SNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTG 540
           +   D Q   + +R R      +S+ +I R      D+  E   S +     A  D+LT 
Sbjct: 286 ITHLDRQLREVELRQRVNIEKLDSDNEIGRLSVRFYDMYKELNSSYQKTKAMAENDHLTQ 345

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR  F   +  IL       +    ++ ID+D +K +ND  G  VGD +LV+    I 
Sbjct: 346 LANRYQFQVYVERILANKQRHTHAW--ILYIDLDNFKYVNDKYGHHVGDSLLVNFAEHIR 403

Query: 601 ELLKF-------PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L            + +RLSG+ F I + +        + A  + + I    +       
Sbjct: 404 SLSHSYQHRCGIECMASRLSGDEFAIFIAAGQAGNYAEEIAHQVLEPIQNHTDPSLGSFP 463

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDL 711
           +TASIG AS+       +++L NA+ AMY AK  G N V  +        +    ++  L
Sbjct: 464 ITASIGIASYPEDGKLLAKLLSNADTAMYQAKRAGKNQVAHYSKELDEIVQRRTQVERAL 523

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
                 +E  L+Y P      E+I G+EAL++WD PK G +  +EF+ I+E++ +   I+
Sbjct: 524 RNGDLENEFTLMYQPYFDRTGEKIKGVEALLRWDSPKLGKVPPTEFIPISEQIGLFGTID 583

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++++  +D    +      PI + +N++S +L   +L   +Q L+ +     + I   
Sbjct: 584 RWVIKQAFKDFAKLQASF-DEPIQLSVNLSSAELDSLQLAYDIQDLMIQYPVQANLIDFE 642

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG- 890
            +E+    +  +S  LL  L ++G  LT+DDFG+  S ++ L   P   +KF+   +   
Sbjct: 643 ITET--FASDSQSYRLLYELAQMGFKLTIDDFGSGYSSITQLVEYPVQKIKFDREFLETL 700

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  +++ ++ +  +    + A+ I      + L    CD++Q  ++++PL  + +
Sbjct: 701 IKTDNHQVVKPLVDLCHSQSMMVTAEGIESPEMHRWLADNKCDFMQGYYLSAPLPLSQL 759


>gi|240144652|ref|ZP_04743253.1| putative hybrid signal transduction histidine kinase and
           diguanylate cyclase/phosphodiesterase [Roseburia
           intestinalis L1-82]
 gi|257203292|gb|EEV01577.1| putative hybrid signal transduction histidine kinase and
           diguanylate cyclase/phosphodiesterase [Roseburia
           intestinalis L1-82]
          Length = 554

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/446 (23%), Positives = 192/446 (43%), Gaps = 17/446 (3%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +   K+S +  L     D+LTGI NRQ F  +   +LD S    +     + +DID+
Sbjct: 117 FRVMNAIKRSKQHFL---EYDSLTGIYNRQMFYQKTREMLDDSK---DETFAFIRLDIDR 170

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADF 633
           +K IN   G A GD +L  +   I  +L         RL+ + FGI +  E         
Sbjct: 171 FKMINSFYGAAEGDRLLRCMAHNICGVLSAYKTYTYGRLNSDVFGICVAVEK-EQDALLI 229

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +R+ +       E    +  S G       ++  S + ++A +A    K +  +H  
Sbjct: 230 AQKIREQVKKN---GELRCYLETSAGCYIIRDKEMEVSAIYEHAVIAAQECKGQYMHHEA 286

Query: 694 SFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +             I  ++  A+E  +  + + P   L      G EAL++W  P    
Sbjct: 287 LYTEQMGKEMQREQQIINEMDTALEEKQFVVYFQPKYELDGYTPRGAEALVRWKKPDGTM 346

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  EF+ + E+   I  ++ ++ +++ + I +       P   I +N++  +L +    
Sbjct: 347 VSPGEFIPVFEKNGFIIKLDYYVWDQVCQLIATALRAGRKPD-PISVNVSRVNLYNPNFL 405

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E +  L+ K    P  + L  +ESV           +  L K G ++ +DDFG+  S L+
Sbjct: 406 ESLVNLVEKYRIPPEYLHLELTESVFSDTENVILNAVNYLHKAGFTILMDDFGSGYSSLN 465

Query: 872 YLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  I  D +K +   ++      +   IL ++I MAK ++  +IA+ +  +  ++ L R
Sbjct: 466 VLKDIDLDVLKIDMKFLSKGKDDGRGEKILAAVIQMAKALDMPVIAEGVEEKKQVQMLKR 525

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           +GC+YIQ  + A P+      +L ++
Sbjct: 526 LGCNYIQGYYFAKPMPQEDYERLARK 551


>gi|326793801|ref|YP_004311621.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Marinomonas mediterranea MMB-1]
 gi|326544565|gb|ADZ89785.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Marinomonas mediterranea MMB-1]
          Length = 768

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/432 (22%), Positives = 203/432 (46%), Gaps = 14/432 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              E I+  +  D LTG+ NR +    LT+ L            ++ I+I ++K IN ++
Sbjct: 337 NREEEIIFRSSHDFLTGLYNRSALERELTSQL------PRSCGALVRINIRRFKDINSMM 390

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL      + ++    + +AR  G+ F +IL   +           ++  I  
Sbjct: 391 GFDAGDEVLKQTGTILSDISPDVEYVARTGGDEFTVILSKHHREEDCLKLQEIIQHEIEK 450

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRS 702
            I    + I +  SIG    ++   T+++ ++  ++    AK    G       +     
Sbjct: 451 GI---NQRIRLKVSIGVLPLSADITTANDAMRRIDITSGRAKERELGIAFYQDGLDEINQ 507

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + I  D+  A+ N++L++VY P I + +      EAL++W HP+ G +   EF+ + E
Sbjct: 508 RNLTIINDIDNALLNNQLFMVYQPKIAVREGCCYEAEALVRWVHPELGFVPPDEFIGLLE 567

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   ++ +  ++LE++   + +W        + + +N+++ DL++  L + +   +++  
Sbjct: 568 QTGNVQQLTFWVLEQVIDQVSTWWA--GGDKVTVAVNLSALDLVNESLPDWLTNKLNEKG 625

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S I L  +ES VM + ++   +L RL++    L +DDFGT  S LSYL  +P + VK
Sbjct: 626 LPVSAISLEVTESAVMSDADKVVSVLERLQEKQFHLAIDDFGTGQSALSYLRDLPVNEVK 685

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +    + +    I+R+ I ++ ++   + A+    +  ++ L  +GCD IQ  + 
Sbjct: 686 VDRAFVQYLDTNDNDKYIVRATIELSHSLGFKVTAEGAENKEGVEILKTLGCDKIQGYYF 745

Query: 941 ASPLGFNSILKL 952
           + PL  +  +  
Sbjct: 746 SKPLAPDDYMVW 757


>gi|322433080|ref|YP_004210329.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321165307|gb|ADW71011.1| diguanylate cyclase/phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 642

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 203/435 (46%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     +  +F D+LTG+ NR      L    + +         +MV+D+D++K++ND L
Sbjct: 203 QREADHIFRSFHDSLTGLANRAL----LQKAFEENNATSPEDRVLMVMDLDRFKQVNDTL 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VLV ++RR+ ++L    +L R  G+ F  ++ + ++   +   A  +   + +
Sbjct: 259 GHRVGDHVLVEVSRRMKDILGEETLLVRTGGDEFAALIDNPSSLQTVELLASRIVSILTL 318

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           PI   E  I +  SIG         + S++L  A+LA+Y AK+ G N    F  S     
Sbjct: 319 PILSGEHIIQIGVSIGICPRDQVNASLSDLLHCADLALYKAKNTGRNRYLVFEESMKARS 378

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + I+  L  A++     L Y PI+   D  ++G EAL++W+    G I  S+F+ +A
Sbjct: 379 LQEMSIEYRLRSAIDQGSFKLHYQPIVS-ADAVLLGFEALLRWEDGANGEIPLSDFLPVA 437

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  +++        +W    N   + + +N++++ L        +   + ++
Sbjct: 438 EDTGLIVPLGEWVIREACAQAAAWHRSGNKL-VKMSVNVSARQLASESFVGNVLRCLVES 496

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ + L  +E+V+  N   +   L  L   G+ L++DDF    S  +Y   +P  T+
Sbjct: 497 GLPPAHLCLEMTENVLAQNYPETSGPLRLLSNYGVELSIDDFTIDPSSWTYPADLPIHTL 556

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +  +      ++     + + I MA     T++AK +     ++ L  MGCD IQ  H
Sbjct: 557 KIDRRVTRAMMQSDDYAERIGAAIGMAHMRRLTVVAKGVETREQLELLRGMGCDEIQGFH 616

Query: 940 VASPLGFNSILKLLK 954
           ++  +      +LL+
Sbjct: 617 ISQAVSSERAKELLE 631


>gi|294676202|ref|YP_003576817.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
            1003]
 gi|294475022|gb|ADE84410.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Rhodobacter capsulatus SB 1003]
          Length = 1245

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 234/585 (40%), Gaps = 31/585 (5%)

Query: 400  IFSDGERQSLAVLGSGDIVWDWDIVR----DRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            I     R +  +      ++++   R    D   T+   + ++GL   ++       L  
Sbjct: 664  IRLAHARIASILDIVPVGLFEYRRSRGGSADFPYTSGRFSELVGLDRAAIDRLGGGLLDR 723

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +   DR     +            +  FR    +    W++    P +  +G ++ + G 
Sbjct: 724  VLPEDRVAMEEMTRQSAASLT-PWRMRFRYIHPERGQIWLMAASLPEAKPDGTVV-WTGA 781

Query: 516  ANDIT-------EQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
              D T       E +++              A  D LT +PNR+ F   + T L  +   
Sbjct: 782  LYDATPDVLREAELERAYALAERMRGENEHLALHDGLTRLPNRRYFDRHIETRLRAAELG 841

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                  ++ ID+D +K+IND LG   GD VL+ +   +   L+  D  ARL G+ F ++L
Sbjct: 842  GPRDCVLIQIDLDHFKQINDTLGHEAGDRVLMRVADLMRSSLQADDFAARLGGDEFCLLL 901

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +  ++       +RK +  P+        ++AS G     +    + E+   A+ A+
Sbjct: 902  APGSTEVRARKVLERLRKGLDEPLRYRGHPCRISASFGVVIAKNITDLAEELQLYADAAL 961

Query: 682  YHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
            Y AK  G N VE F  +      +  M+      A E  E    + P +R  D  + G+E
Sbjct: 962  YRAKATGRNRVEIFDHAMAEQMHLDRMMAAQFSAAFERDEFEPWFQPQVRAQDLRLAGVE 1021

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             L++W +P+ G ++   F+ +A +L ++  I+  M+E+ A  +        + P  I  N
Sbjct: 1022 VLVRWRNPERGLLTPDAFLRVARDLRIVPEIDRVMMEKTAAVLERLETTGIILP-RISFN 1080

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISL 858
            + +  L D  L   ++ +            L   E+          R  L RLR  GI +
Sbjct: 1081 VCTGRLHDPALPAAVRRVGRGRTRVA----LELRETGDWQEEGCDLRETLARLRAEGIDI 1136

Query: 859  TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
             +DDFG+  + +  L  I    +K +  ++           ++R I+ +A+ +    IA+
Sbjct: 1137 EIDDFGSGQTSILGLMEIRPAALKIDRRIVAALRRDTHEADLVRQIVQIARTLGVATIAE 1196

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL-KERFPLV 960
             +      + L +MGCD +Q    A PL   +    L ++R P +
Sbjct: 1197 GVETMAQAETLRQMGCDILQGYLFAPPLEEAAFRDYLDRQRAPAL 1241



 Score = 97.3 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 4/139 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-H 446
           V       +      ER  +A  V       W W++    +        +LG   G +  
Sbjct: 113 VTEAACAEELARCRAERDEIARYVDHRELGTWAWNLQTGALRCNDHWGLMLGYRPGELAL 172

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNS 505
             I  W    H +D    +  L   +       + E R+R  D ++ W+    R  +S++
Sbjct: 173 PSIDTWRRLCHPDDLQRAQHELQRHLAGESPWYEVETRMRHRDGRWIWVRDVGRLQISDA 232

Query: 506 NGDILRYIGIANDITEQKK 524
            G      G+  +I   + 
Sbjct: 233 QGRPEWIYGVRRNIDATRA 251



 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 3/140 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + V +++ AT      +         A   +G   W+ D+  + +  + +   I G+  G
Sbjct: 240 YGVRRNIDATRAREGQLRRVQGLLEKAGALAGFGCWELDVRSEEIYWSDETCRIHGMPPG 299

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           +   P+ + + +     R      + + +       Q+E  +  AD    W++       
Sbjct: 300 T-VPPLESAIDFYAPEARPVVTEAVAAAMR-DGTSWQFELPLIRADGTRIWVLSLGEAQF 357

Query: 504 NSNGDILRYIGIANDITEQK 523
             +G  +R  G   DIT +K
Sbjct: 358 -EDGQPVRICGAFQDITARK 376



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 7/154 (4%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFS--QGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--- 428
           G V+    +     Q  +        + +    ER           +++     D V   
Sbjct: 499 GSVIWYGSVLDVTEQSAMQARLAETLEELRLAHERLDTIAQNVPGALFEMQRSGDIVSFP 558

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             T     +LG+ +  M          I   +        +        +++   RV   
Sbjct: 559 YFTHKFVELLGVTAADMLAGGPAVFRNIPPAEFAAVYAAFERSRET-LSQVEARHRVLLP 617

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           D    W+ +   P   ++G + R+ G A DIT++
Sbjct: 618 DGSTRWVNLWASPSVQADGRV-RWFGKALDITDR 650



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 2/100 (2%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +  +  +LG+   ++          IH  D       + +        L   +R+   
Sbjct: 422 YFSARLPDLLGVPRAAIEADGAAAAANIHPEDAPQLTEAIRTSRDSLT-PLVILYRLLHP 480

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 M +   P+   +G ++ Y G   D+TEQ      
Sbjct: 481 QKGLRRMQLSSMPVRQPDGSVIWY-GSVLDVTEQSAMQAR 519


>gi|299537982|ref|ZP_07051268.1| phytochrome-like protein cph2 [Lysinibacillus fusiformis ZC1]
 gi|298726564|gb|EFI67153.1| phytochrome-like protein cph2 [Lysinibacillus fusiformis ZC1]
          Length = 718

 Score =  371 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 207/439 (47%), Gaps = 19/439 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKIN 580
           ++ + I   A+ D  TG+PNR SF++ +   +    +          I I    ++ ++ 
Sbjct: 292 RTQKKIWDLAYTDITTGLPNRHSFVNTIEREVQQGQSG--------FIKILKPSEFHQVV 343

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ++ G  +GD++L  L +R+ +      + +AR + +   +I+ + +    + D+ + +++
Sbjct: 344 ELYGREIGDELLRQLAKRLEQDKSESIEYVARFTSS--SLIMTTMSLHEDLHDYEMRIKE 401

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +I  P  +  ++I +T   G AS++   I  ++ ++ A+ A+  A  R G H E F    
Sbjct: 402 TIRQPFIIGGKQIYITLKTGIASYSDD-ININDAIRFADNALSFAIDRPGTHTEIFTTEK 460

Query: 700 FRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  +     L  A++N E+ +   P + L + +I  +EAL +W  PK G +S + F
Sbjct: 461 NDVLVQKMTVLNHLSEAIKNKEITVHLQPKVDLRNGDIQSIEALARWISPKLGFVSPAVF 520

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE    ++ I++ +LE +   +   +       + I +NI+          +    L
Sbjct: 521 IPVAESAGKVREIDVLILETVLSWLSERQRLGRKL-VKIAVNISPDHFYYTHFVQDTLKL 579

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    PS I L  +E++ + + + +  ++  L+  G   ++DDFGT  S LSYL  +P
Sbjct: 580 VRKYNIDPSYIILEVTENIGLVDFQSAYKIIQELKSYGFKTSVDDFGTGFSSLSYLQQLP 639

Query: 878 FDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           F  +K + S +        +AI+RSII +A N+    +A+ I  E  ++ L  +GC   Q
Sbjct: 640 FAELKIDRSFINAIEDPATLAIVRSIIQLALNLGMISVAEGIETEEQVEILRALGCTVGQ 699

Query: 937 DSHVASPLGFNSILKLLKE 955
                 P+    +  +L +
Sbjct: 700 GYFYFKPMPIEQLDIILDQ 718


>gi|156974824|ref|YP_001445732.1| hypothetical protein VIBHAR_02543 [Vibrio harveyi ATCC BAA-1116]
 gi|156526418|gb|ABU71504.1| hypothetical protein VIBHAR_02543 [Vibrio harveyi ATCC BAA-1116]
          Length = 498

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/501 (20%), Positives = 221/501 (44%), Gaps = 11/501 (2%)

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +H  DR+     +D+ +     R+   +R+R  + Q+ W+          +G     +G 
Sbjct: 1   MHPLDRERLSKRVDAHINTDNTRVTTTYRLRKPNGQYVWIEGVAMTKETEHGH--YMVGS 58

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DI+E+K     I   AF DN +G+ NR   L  +  +++      +   ++  I I++
Sbjct: 59  HRDISERKLMESYIHQVAFHDNASGMANRAHLLLNINELIE----SKSTHASIFYIQIEE 114

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K   +  G  + D ++  L + +  L      + R+  + F I+++ E     +  +A 
Sbjct: 115 IKSYLNQYGSELVDGLVEKLLQTLSHLPSSNCTVYRVHDDDFAILVLDEVPLEDLQVYAK 174

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            ++++    +    + +    SIG       + ++ E+++ A     +A  +  + +  +
Sbjct: 175 TIKRNYHDAVVEKGQYLGSNISIGLYPCIDPEHSAEEIVRKAARTCQYANEKNKDRIAVY 234

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +         I++ L  A+E   L + + PI+   D ++V  E+L++W   ++G I 
Sbjct: 235 SQKTQYAVDRYFFIEQGLKNALEERTLSVKFQPIVSASDLQVVSFESLVRWRSKEFGEIY 294

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE   +I  +   + E+  + I S+R++     + + +N++   LL++E    
Sbjct: 295 PDEFIPVAENKGLIVELGYQVFEKACQFIKSYRERYQNQ-VRVNVNVSVLQLLNSEFPSK 353

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A+  +    P  I L  +E+ ++ N + +   L  LR++G SL++DDFG   S L+  
Sbjct: 354 IKAMADQVGIEPQAIVLELTETFILDNNQAAIAPLNTLRELGFSLSMDDFGAGYSSLNCF 413

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K + S+   T +       L+ +I M +     ++ + I           MG
Sbjct: 414 FDLPMTQIKIDKSMAWKTLTNRSSREYLKFLITMCREQNIEVVIEGIEDAKMCDFFAEMG 473

Query: 932 CDYIQDSHVASPLGFNSILKL 952
            DY+Q    + PL   S  + 
Sbjct: 474 VDYLQGYWFSKPLSVASASRY 494


>gi|90417487|ref|ZP_01225410.1| sensory box/GGDEF domain/EAL domain protein [marine gamma
           proteobacterium HTCC2207]
 gi|90330728|gb|EAS46007.1| sensory box/GGDEF domain/EAL domain protein [marine gamma
           proteobacterium HTCC2207]
          Length = 622

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 204/453 (45%), Gaps = 19/453 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+   K+          + L+G+P     +D +   LD   +D      +++ID+D +  
Sbjct: 169 ISVPVKTPAQQTDQDRYETLSGLPVSLRLIDSIAEYLDQPQSD-TACGALLLIDLDHFNS 227

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-----SLKIADF 633
           IN+ LG AVG+ +L      I  L      + +++G+ F +++ +  +            
Sbjct: 228 INESLGKAVGNQILERAAETIKGLCTEHMEMDQVAGDSFLVLIKNIADSAEQAREASLAI 287

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFAS--------WTSSKITSSEMLKNAELAMYHAK 685
           A  +R  +  P      E++VT+S+G +              I++ + ++ AE AM+ AK
Sbjct: 288 ANEIRCILTRPFFTESGEVSVTSSVGISVLYAGLYYASPEVIISAEQAVQQAESAMFEAK 347

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            RG ++V  F          R+ ++  L  AV N E  L   P +     ++VG E L++
Sbjct: 348 RRGRDNVVLFDSQITRQARQRINMQSSLRKAVANQEFDLHVQPQVSTHSGDVVGGEVLLR 407

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIAS 802
           W H      S ++F+ + E   MI  + L+++      + +  DQ    P + + +NI+ 
Sbjct: 408 WMHSGQAQRSPADFIPVLESSGMIVDVGLWVIRTSCEYLRNMLDQGLWTPDMQMAVNISP 467

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K   D +L + ++  +      P  + L  +E++++ + E     + ++R +G    +DD
Sbjct: 468 KQFHDPQLIKSLEQSLKSYDIRPDMLTLEVTETLLIDDFESVVDKMKKIRNMGTRFAIDD 527

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  S + YL  +P D +K +   +T     +    ++ +I+ +A +    ++A+ +  
Sbjct: 528 FGSGYSSMIYLKRLPLDILKIDREFITHLNSDKETLGLVEAIMMVAHHYGLDVVAEGVEK 587

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +  L  +GC+  Q +H + P+  +   +LL
Sbjct: 588 REVLDILRSLGCEKYQGAHFSMPVSLDKFQRLL 620


>gi|297539682|ref|YP_003675451.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297259029|gb|ADI30874.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Methylotenera sp. 301]
          Length = 705

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/440 (22%), Positives = 192/440 (43%), Gaps = 10/440 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D+LTG+ NR+ F  RL   L  S  ++N +     +D+D++K +ND  G
Sbjct: 263 ATSMLRHQAQHDDLTGLINRREFEVRLERCLK-SVHENNAQHIFCFLDLDQFKLVNDTCG 321

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            + GD++L  ++  +   ++  D LARL G+ FG++L +   +         ++      
Sbjct: 322 HSAGDELLKQVSILLANKMRERDTLARLGGDEFGLLLENCTLTDANQINNALLKTIRDYR 381

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----F 700
               ++   +  SIG           SE++  A+LA Y AK  G N    F         
Sbjct: 382 FIHDDKIFNIGVSIGLVVINQGFENVSEIIHAADLACYSAKSAGRNQSFLFNPGDVEVVR 441

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +   V    D+   +++ +  L   PI+       ++   E L++        I  + F+
Sbjct: 442 QRSAVESISDITDEIDDEQFMLYCQPIVPLTSATTQLQHYEILLRKIDLDGKIILPTTFI 501

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQAL 817
             AE   ++  I+ ++++ +        +       +I  IN++   L D  L   +Q +
Sbjct: 502 PSAERYHLMPNIDRWVIKNVFLAYQKLLEINAEKCNYIFSINLSGTSLGDKSLLSFIQDM 561

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K    P  I    +E+  + N + + LL   LRK+G S  LDDFG+  S  +YL    
Sbjct: 562 FIKYSIPPQSICFEITETAAIVNLKNTILLFSALRKLGCSFALDDFGSGMSSFTYLKNFD 621

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +G+ +      +   A++RSI  +A+ +    +A+ +  E  + EL  +G  Y 
Sbjct: 622 VDYLKIDGTFVKEMHINKIDHAMVRSIHSVAEAMSIKTVAEFVENEEILSELKSIGVHYG 681

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  ++ +P+    +++   +
Sbjct: 682 QGLYLGAPVTVKGLIERYAK 701


>gi|145300307|ref|YP_001143148.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853079|gb|ABO91400.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 643

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 198/448 (44%), Gaps = 20/448 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D LTG+ NR + L+++ +          +   ++++DI+ ++ IN   
Sbjct: 197 REARRHFRAARVDPLTGLVNRLALLEKMESY-----ATKEIPFGLVLVDINDFRDINSKF 251

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  + +R+  L +  + +ARL G++F II    ++  ++ +  + +  ++  
Sbjct: 252 GYNTGDFLLQEMAKRVRNLCENGEWVARLGGDQFAIIQRESSDLRQVRELVVRLLHALKQ 311

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRS 702
            I +      +   IG A +      + E+L  AE A++H++       +    + +  +
Sbjct: 312 DIIIDNYPFRLEVGIGIAFFPMDSKLTQELLSRAEQALFHSRKTHVPYVIYDNSLLNETA 371

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  +  D+ +A+E++ L L Y PI+ L       +EAL++W HP+ G I  +E + +AE
Sbjct: 372 RRKHLASDMIMALEHNALELYYQPIVNLESGRCEAVEALLRWRHPELGFIPPNEVIQVAE 431

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  + + +  ++L      +  W+ Q  +  + + +NI+   +    L + +   +    
Sbjct: 432 EFQLAEKLGSWVLNTACEQLYQWQ-QLGLVDLQMCVNISPG-MYQRNLLKLVAKALMDHH 489

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E   M   + S  L+  L + G+ L LDDFGT  S LSYL  +P   VK
Sbjct: 490 IPAASLVLEVTEDTTMREVKNSLQLMQDLNQQGVQLALDDFGTGYSSLSYLQNLPVSKVK 549

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCD-YIQDS 938
            + S + G     +   ++ +I  M   +  +++ + I  +  +  L  +     Y Q  
Sbjct: 550 IDRSFIQGIDTSIEASELVANICRMGSMLGKSLVCEGIETQAQLDVLRTLTDIHLYGQGY 609

Query: 939 HVASPLGFNSI--------LKLLKERFP 958
             + P     I           LK R P
Sbjct: 610 LFSRPEQAEKIYQTLLEMEEAWLKRRQP 637


>gi|332139483|ref|YP_004425221.1| Intracellular signaling protein (GAF,GGDEF,EAL domains)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549505|gb|AEA96223.1| Intracellular signaling protein (GAF,GGDEF,EAL domains)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 866

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/423 (26%), Positives = 216/423 (51%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+K+    ++ +A  D+LT +PNR  F  RL   +            V+ ID+D++K 
Sbjct: 429 IEERKEIELKLIHDAHHDSLTDLPNRAMFTSRLELAIASKQRYSENMFAVLFIDLDRFKV 488

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD+ L+ + RRI   ++  D+LARL G+ F ++L +  +   + + A  + 
Sbjct: 489 INDTLGHHAGDEFLIEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDEDDVEEVASRII 548

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            SI+ P  L  RE+   AS+G A   +   ++ E+L++A+ AMY AK  G      F   
Sbjct: 549 SSISEPFLLDGREMYSGASVGIAHIETYYRSADEVLRDADAAMYQAKTLGRGRFVMFDKS 608

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     + + ++ +   A+   E      P+I+L D+  +  E  ++W HP +G I+  +
Sbjct: 609 MRDRLIEELELENEFRRALREEEFDYFLQPVIKLDDKSTLYKEMYVRWSHPAYGKIAREQ 668

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F  +AE   +   ++LF L +   ++I++    + P   I +N++   LL   +   M  
Sbjct: 669 FRQVAEHSGLTLDLDLFQLTKAC-ELINYYQGTDDPINKIAVNVSINHLLQASMVNQMID 727

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I     +PS++   F E+ +    +     + +L++ G++L LD+FG+  + LSYL   
Sbjct: 728 VIESADITPSQLVFEFDENDLNRRSQFILPAIKKLKRAGVTLVLDNFGSGLASLSYLFAY 787

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFD +K +   +     +++ + +++S++ ++++++  +IA+ +  +  +  L  + C Y
Sbjct: 788 PFDFIKIDHRFVKSIPRSQRNLKLIQSVMLISEHLKFQVIAEGVDSQAQLDALNEIECIY 847

Query: 935 IQD 937
            Q 
Sbjct: 848 GQG 850


>gi|109896402|ref|YP_659657.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
 gi|109698683|gb|ABG38603.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pseudoalteromonas atlantica T6c]
          Length = 863

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/430 (27%), Positives = 208/430 (48%), Gaps = 5/430 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+K   + ++ +A  D LT +PNR  F  RL+  L       +    V+ ID+D++K+
Sbjct: 427 IEERKAIQQKLVHDAHHDALTDLPNRTMFNARLSQALANKKRYQHNNFAVVFIDLDRFKQ 486

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+ +  RI   ++  D+LARL G+ F I+L + ++   +   +  + 
Sbjct: 487 INDTIGHHAGDSFLIEVASRINHCIRGHDLLARLGGDEFVILLDNFDSPEDVEIISTRII 546

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           +SIA P  L  REI   ASIG A   S   ++SE++++A+ AMY AK +G      F   
Sbjct: 547 ESIATPFVLDGREIFSGASIGIAYLESGYRSASEIVRDADAAMYQAKSQGRGQYVVFDLT 606

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     + + I+ +   A++N    +  HP+  + D   +  E  ++W HPK G +    
Sbjct: 607 MRKKLLEELEIETEFRKALKNEAFDVYSHPVFNMTDSTHLYDECRVRWVHPKLGIMDRDS 666

Query: 757 FMLIAEELCMIKAINLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           F  IAE   ++  ++ +ML      +       AN     + +N++   L  +E    + 
Sbjct: 667 FWQIAEHSGLVVEMDNYMLRAAYAMLSQPLTSYANNEYYKVAVNLSIHYLTHSEAAVQLI 726

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I      P R+   F E+ +    + S   +  L++ GI L LD+FG+  + LSYL  
Sbjct: 727 QDIRDRGIDPKRLIFEFDENDLNRRSQFSLPAIKHLKRSGIKLVLDNFGSGLASLSYLYS 786

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD VK +   +     +E+ + +++S+  M++ +   +I   I  +  +  L  +GC 
Sbjct: 787 YPFDFVKVDHRFVKTIPRSERNLKLIQSVYAMSEQLSFRLIVSGISDKEQVDLLRSVGCQ 846

Query: 934 YIQDSHVASP 943
             Q  ++ +P
Sbjct: 847 LGQGPYLEAP 856


>gi|320155998|ref|YP_004188377.1| putative signal transduction protein [Vibrio vulnificus MO6-24/O]
 gi|319931310|gb|ADV86174.1| predicted signal transduction protein [Vibrio vulnificus MO6-24/O]
          Length = 571

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 220/551 (39%), Gaps = 13/551 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R         + ++  D                G+ SG +   +  W   +H  DR    
Sbjct: 22  RFMHIFDVFSEGLFHMDEQGVMSFYNKQFYQQFGIESGIIA--LDTWFELVHPLDRSKLS 79

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D  +     R+  E+RVR  +  + W+          +G  +  IG   DI+E+K  
Sbjct: 80  ARVDDHLMCEDLRVTSEYRVRKPNGHYVWIEGTAVTRKTDSG--IYLIGSHKDISERKLM 137

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   AF DN +G+ NR     RL   ++ S    +L   ++ I I+  K      G 
Sbjct: 138 ESYIHQVAFHDNASGMANRS----RLLLDIEESFQASSLPYALIYIQIEDIKSYLSHYGS 193

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            + + V+ S+   +  L      L R+  + F ++L       ++ +    +++     +
Sbjct: 194 EILNHVVQSMLTAVSHLPGQVARLYRVRDDDFAVLLEGNFTEQQLLNICSTIKQRYHDTV 253

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSD 703
               + +    S+G      +     E+L+ A     +A  K      + S R       
Sbjct: 254 VEQGQLLGTGISMGLIPRIENTHEGEELLRKAARTGQYASKKKANKIALYSARTQQIVDR 313

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++ L  A+E+  L + + PI+     E+   E L++W   ++G I   EF+ +AE 
Sbjct: 314 YFFIEQGLQSAIESQSLNVKFQPIVCAKHLEVKSFETLVRWRSKEFGEIYPDEFITVAEN 373

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+  +    I  +  Q N   I + +N++   LL++   + +  + S+   
Sbjct: 374 KGLIIDLGYFVFRKACEFIQKYN-QTNNKNIRVNVNVSVLQLLNSNFPQRIHEMASEYGI 432

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SP+ I L  +E++++ N   +   L +L K+G  L+LDDFG   S L+    +P   +K 
Sbjct: 433 SPNSIVLELTETIILDNNSAAIEQLNQLSKLGFHLSLDDFGAGYSSLNSFFDLPMKQIKI 492

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S+   S       A L  +I + +N    ++ + I      +    MG  Y+Q    +
Sbjct: 493 DKSMAWRSLKNPDLTAYLSFLIQLCRNNRIDVVIEGIEDAEMYQTFRNMGVSYLQGYWFS 552

Query: 942 SPLGFNSILKL 952
            PL   S  + 
Sbjct: 553 KPLSLASASRF 563


>gi|320450268|ref|YP_004202364.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Thermus
           scotoductus SA-01]
 gi|320150437|gb|ADW21815.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Thermus
           scotoductus SA-01]
          Length = 549

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/546 (21%), Positives = 218/546 (39%), Gaps = 25/546 (4%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRD 462
            E     +    + V   D     +        + G     + G   +      H   ++
Sbjct: 8   LEVLEAVLDQLAESVLITDSAGRILYVNEAFEQLTGYRREEVLGKNPKLLKSGYH--TKE 65

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            +R      +       +  F  R  D   +     + P+ NS+G++   +  + D+TE+
Sbjct: 66  FYRQFWQQILAGI--PYRGYFVNRRKDGSLYTEEKIVTPVRNSSGEVAYLVATSRDVTEE 123

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 +   A  D LT + NR++F++++   L            +  ID+D++K +ND+
Sbjct: 124 MAFRAKLEHLATYDPLTQLLNRRAFIEKVEGELISVNEGR----ALAYIDLDRFKMVNDL 179

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  VGD +L  L RR+   L    I+ R+ G+ F     +     +       +  +I 
Sbjct: 180 LGHQVGDSILAELGRRLQAAL-PQAIVGRMGGDEFAAWYPAAA-ESEAKAKGKLLLDAIN 237

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           M I++  + + +  S+G A +     T SE+L+ A+LAMY AK       E F       
Sbjct: 238 MEIHVQGQPVHLEGSMGVALFPDHGATLSELLRRADLAMYRAKLFRLPEPEVFTPDLEGL 297

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +  +  L  A+   +  LV+  ++ L +E +   EAL +   P+            
Sbjct: 298 TPKALSYEAALHRALAAGDAQLVFQSLLDLKEETLTHAEALFRIPSPEGLINPLVHL--D 355

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
                + +A++ F++ +  R +     Q   P + + +NI    L D      +   + +
Sbjct: 356 LSRRSVNEALDRFVINQA-RSL-----QGKYPQLTLWLNITPWSLSDPAFLALLYQEVER 409

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R+ L  SE +V     R    L RLR +GI L LDDFG     L+YL  +P + 
Sbjct: 410 -GLQTDRVILEISEQLVQPQLSRIAPALWRLRNLGIRLALDDFGAGQISLTYLKSLPINF 468

Query: 881 VKFNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           +K +        GS      +LR I+ MA  +  +++ + +  + D+     +  D +Q 
Sbjct: 469 LKISREFFWAHRGSNGTPAPVLRHIVEMAHELGLSVVLEGVETKEDLNLARALNVDLVQG 528

Query: 938 SHVASP 943
             V +P
Sbjct: 529 YFVHTP 534


>gi|308185511|ref|YP_003929643.1| hypothetical protein Pvag_pPag10133 [Pantoea vagans C9-1]
 gi|308055791|gb|ADO07961.1| Uncharacterized 80.5 kDa protein in ntrC 5'region [Pantoea vagans
           C9-1]
          Length = 709

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/580 (18%), Positives = 220/580 (37%), Gaps = 29/580 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   +         ++  +R       S D +   D+ R      P    + G ++ 
Sbjct: 130 AALVMDRMEMHRLELLRYTSQQRLQAISSTSPDAIVCTDLRRGITFWNPAATALFGYSAE 189

Query: 444 SMHGPIRNWLPYIHI---NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
            M G   +    I      D  N    + S           +      D +     +   
Sbjct: 190 EMRGQYVS--ELIPARCQTDYRNELARITSDEAAISHPRSLQIWGVTRDGREFPAEVSFS 247

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
                   ++  I    D+T + +S   +   A  D LT + +R +F+D++  +      
Sbjct: 248 GWREEGERLVGMI--IRDVTARYESEARLCELASLDMLTRLASRSAFMDQVGQLTKA--- 302

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
              +  T+++ D+D +K++ND LG A GD +L  +  +I  +       ARL G+ F I+
Sbjct: 303 --GVPYTLLMTDLDGFKEVNDTLGHAAGDALLCHVAEQIRAVCAGAVTAARLGGDEFVIL 360

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +    I   A  +  ++  P    +  + V AS G AS+       S ++  A+LA
Sbjct: 361 LAGGSAEAAIT--AEKLIAAVQTPFRYHDSPVVVGASTGIASYPEHGRDPSAVMSAADLA 418

Query: 681 MYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +Y AK  G      F  +       R   + +L  AV   +  L Y P   +   ++ G 
Sbjct: 419 LYRAKASGKGCSILFMPAFREAEQQRRRFERELETAVRQQQFTLYYQPRFDVESGKLAGC 478

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W HP  G +  ++F+ +  +  +   +  +++      +  W+     P + + I
Sbjct: 479 ETLVRWQHPTRGLLLPADFIGMLVKSPLSVTLGEWIIRSALAQVRQWQ--VRSPELRVSI 536

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE---SVVMGNPERSRLLLGRLRKIG 855
           N+  + L  N L   ++            ++L   E   +V++ +       +  +R+ G
Sbjct: 537 NLFPRQLTGNSLENVIRE---SAGGDAGFVELEVDEPLLAVLVQDMPV---QVEAVRRTG 590

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
            S  +D +G     ++ L +      K + SL            + RSI  + K++   +
Sbjct: 591 ASFVIDHYGRTLGAINLLRHSFVAGFKIDKSLTHELNSSMRVRMMYRSIAALGKSLGIRV 650

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            A+ +  +  I  +T  GC  +Q + +  PL       +L
Sbjct: 651 AAEGVEDKEQIAFVTSAGCHIMQGNGLCRPLTPADFEAML 690


>gi|126734482|ref|ZP_01750229.1| GGDEF/EAL domain protein [Roseobacter sp. CCS2]
 gi|126717348|gb|EBA14212.1| GGDEF/EAL domain protein [Roseobacter sp. CCS2]
          Length = 679

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 206/441 (46%), Gaps = 13/441 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+ KK    +      D LTG+PNR+S ++ +   +     D+    +++++ +D +K +
Sbjct: 233 TQLKKMNTQLEHTVRHDQLTGLPNRRSLIEYIGNTVSNKDADER---SLLLVGLDDFKSV 289

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND +G   GD +L+++++ +   + + +++A + G+ F +I                +  
Sbjct: 290 NDTMGHDYGDALLIAVSQALKNCVDYDNLVAHVGGDEFALISREPTPY-----LIERITA 344

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           S+  P ++  R I + ASIG       + T  ++L +AE+A+ +AK+ GGN  ++F    
Sbjct: 345 SLQEPFHIKGRRIPINASIGHLQMGDLERTPLDILADAEIALQYAKNSGGNRAQAFTQHL 404

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    ++ DL  A+ N E+   + P +RL D ++ G E L +W HP  G ++  +F
Sbjct: 405 RDDLGMMQQLQLDLMDAIRNGEIEPWFQPQVRLADGQLHGAEVLARWRHPTRGLLTPDKF 464

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           M  AE   ++  ++  +         +W       P+ I +N A   + D  L E     
Sbjct: 465 MPAAERAGLMIDLDHAIWRAAMDLAKNWEASDVWQPV-ISLNAAPDTISDPHLLERFLLA 523

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           + ++  +  ++ +   E+ ++   +    + +  L   GI+L LDDFGT  + LS L  +
Sbjct: 524 LQRSGLNADQVIVEVLETTLIDGKDDIAAINIDSLADCGIALELDDFGTGYASLSKLTQL 583

Query: 877 PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P   +K + SL+     +   +I+R+I+ +A  +   ++A+ +  +     L   GC   
Sbjct: 584 PLAGIKLDRSLVAPLPDQAADSIIRAILALAAELGLHVVAEGVEEDEQAVHLNARGCGVG 643

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q      P+  ++  + L++ 
Sbjct: 644 QGYGFGRPMPPDAFTRWLEQH 664


>gi|94263998|ref|ZP_01287799.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93455591|gb|EAT05776.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 885

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 185/444 (41%), Gaps = 17/444 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I+   K    +   A +D LT + N++ F + L   +  +   D     +
Sbjct: 439 LLNLVGSVKAIS---KYTHDLEYYATRDPLTQLHNQRMFWELLGYEVGRAQRHD-YPFAL 494

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID+D +K +ND  G A GD +L  L   + + ++  D +AR  G+ F I+L  E    
Sbjct: 495 IMIDMDNFKTVNDQYGHAFGDMILQQLAEALRQAVRDGDFVARYGGDEFTILLP-ETTRE 553

Query: 629 KIADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +    A  + KSI+    +      +  T S+G A +     ++ ++   A+  MY  K 
Sbjct: 554 QALTVAERIIKSISGMGVLTPDGVRVQATVSLGLAMYPEHGKSAKDLFLVADNMMYKVKG 613

Query: 687 RGGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N++                 I   +  A+E   L   + PI+ L   E+   E L++
Sbjct: 614 EGKNNIAEPEEQDVTRIFKDESEINFRVYQALEEETLLPYFQPILDLNSGEVQAHEVLMR 673

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I++S+F+  A  + ++  ++  ++E+  +       Q       + INI  K
Sbjct: 674 IPATDGTMIAASDFIEAAGRIGLLHKLDHILMEKAFKHAGEQNYQGE-----LFINITPK 728

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             +  E    ++ L  K    P RI    +E   + N    +  + R++  G    +DDF
Sbjct: 729 SFIFPEFFPRIKELSHKYGIPPQRIIFEVTERDTIRNVSMLQKFVTRMKSEGYRFAVDDF 788

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGE 921
           G+  S   YL   P D +K  G  +    +    +   +SII +A+ ++   +A+ +  E
Sbjct: 789 GSGYSSFKYLKLFPIDYLKIEGEFIRNILDDHDFMAYTKSIITLARELKVKTVAEFVEDE 848

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +     +G DY Q  H+  P  
Sbjct: 849 RIMTACRELGVDYGQGYHIGRPAS 872


>gi|192288960|ref|YP_001989565.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192282709|gb|ACE99089.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 580

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/543 (20%), Positives = 228/543 (41%), Gaps = 16/543 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           SL +   G   + WD+  D ++ T   A               ++   +  +       +
Sbjct: 21  SLLLSLLGQAAFVWDLASDTLSWTGRAAEFFQDIPAETLATGASFAALLEPSRHVRSDAL 80

Query: 468 LDSFVGYRRG--RLQYEFRVRAADNQFH-WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           L+       G    + E+ +RA+      W+       +  +G   R  GI     E+  
Sbjct: 81  LNGAAAAGPGCVPYRIEYGIRASTAAPVSWIEETGVWFAGPDGRPARVEGIVRINNERHA 140

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +L  +  D LTG  NR   +  L   ++ ++       + M++ +D   ++ND  G
Sbjct: 141 RDEQLLKLSQHDPLTGELNRTHLIGALAEAIEEASR-FRTSLSFMLVGLDHLARVNDSFG 199

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             V D+V++++  RI   L+  D L R SGN+FG++L +             +       
Sbjct: 200 FDVADEVILTIAGRIRNRLRAGDQLGRFSGNKFGLVLKNCTVDDAHIAAERFLAAVRDEI 259

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           +      +++TASIG  S      T+ E +  A+ A+  AKHR       +R +  R  +
Sbjct: 260 VPTKSGPVSLTASIGAVSAPRHARTADEAINRAQEALAAAKHRRSGSFAMWRPNVERDTQ 319

Query: 705 VMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +     +++  A+    + L Y P++          E L++        + + + + +
Sbjct: 320 RRVNIRVTDEIVTALNERRIVLAYEPVVDASSRAPAFHECLVRMKTDDGQVLFAPDIVPV 379

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE L +I+ ++  +LE +  ++ +       P + + +NI+    +D +   G+++L+  
Sbjct: 380 AERLGLIRLVDHRVLELVVAELAAA------PGVTLSLNISPDTTIDADWWAGIESLMLA 433

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R+ +  +E+V + + +  R  + RL+ +G  + +DDFG   +    L  +  D 
Sbjct: 434 HPGIAERLIVEITETVAIPDLDEVRGFVNRLKTLGAKIAIDDFGAGYTSFRNLRALGVDI 493

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +G+ +     +    A ++++I +A+ +    +A+ +  +   + L   GCDYIQ  
Sbjct: 494 VKIDGAFVQNIARSADDRAFVQTLIDLARRLGIKTVAEWVQDDESAQLLRDWGCDYIQGR 553

Query: 939 HVA 941
            + 
Sbjct: 554 LIG 556


>gi|15964612|ref|NP_384965.1| hypothetical protein SMc00992 [Sinorhizobium meliloti 1021]
 gi|307309358|ref|ZP_07589021.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sinorhizobium meliloti BL225C]
 gi|307320094|ref|ZP_07599515.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sinorhizobium meliloti AK83]
 gi|15073790|emb|CAC45431.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
 gi|306894309|gb|EFN25074.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sinorhizobium meliloti AK83]
 gi|306900227|gb|EFN30845.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sinorhizobium meliloti BL225C]
          Length = 790

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/473 (25%), Positives = 218/473 (46%), Gaps = 21/473 (4%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN----AFQDNLTGIPNRQSFLDRLTTILDLS 558
            +  G+I R      +I E  +     L      ++ D LTGI NR  F + L       
Sbjct: 307 VDEAGEIGRLT---RNIREMHRQSLQSLQLVQRSSWTDTLTGISNRGRF-NMLAAQAVQE 362

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI--------GELLKFPDILA 610
           A     + +++ IDID +K +ND  G  VGD++L +L  RI            + P ILA
Sbjct: 363 AVASGEKCSLLFIDIDNFKFVNDKHGHDVGDELLKTLATRIARDVEEITRRRGQEPAILA 422

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RLSG+ F ++L S+     + +   A+    +    L  +   VTASIG A+      + 
Sbjct: 423 RLSGDEFAVLLRSQPGDGAVQEICGAILALFSDGFELSGKRYPVTASIGVAACPDDASSV 482

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           +E++ NA+ AMY AK  G N    F    +  R+ +  I+++L     + + +LVY PI+
Sbjct: 483 AELISNADAAMYQAKTAGKNRSARFSRALNDKRTRQRQIQDELRSLDPDEQFHLVYMPIV 542

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++ G EAL++W  P  G+++  EF+ IAE   +   I+ +++++   D    +  
Sbjct: 543 D-AGGKVTGCEALLRWHSPVLGHVTPDEFVPIAESSGLFTKIDWWVIDKAMSDCHQLKAL 601

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
              P   + INI+S +L    + E     +++       I +  +E+  +   ++ RL +
Sbjct: 602 FG-PDTVLAINISSAELHSKSINEHFSDCLTRHGLEARSIDIELTETFAVQISDQLRLNM 660

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAK 907
             LR  G  L++DDFG   + +  +     DT+K + +L++     R  A+L++++ +  
Sbjct: 661 EELRSKGFRLSIDDFGAGYTSVQQIIDYAADTIKLDRALVSNLAASRSLAVLKAVVALCH 720

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
             E T++ + +     +  LT  GCD  Q   ++ PL    +      R  L 
Sbjct: 721 AKEMTVVGEGVDTPEKLAMLTAAGCDRFQGYLISKPLPLAELAIWALSRVALA 773


>gi|94267023|ref|ZP_01290667.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93452277|gb|EAT02921.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 885

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 186/444 (41%), Gaps = 17/444 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I+   K    +   A +D LT + N++ F + L   +  +   D     +
Sbjct: 439 LLNLVGSVKAIS---KYTHDLEYYATRDPLTQLHNQRMFWELLGYEVGRAQRHD-YPFAL 494

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID+D +K +ND  G A GD +L  L   + + ++  D +AR  G+ F I+L  E +  
Sbjct: 495 IMIDMDNFKTVNDQYGHAFGDMILQQLAEALRQAVRDGDFVARYGGDEFTILLP-ETSRE 553

Query: 629 KIADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +    A  + KSI+    +      +  T S+G A +     ++ ++   A+  MY  K 
Sbjct: 554 QALTVAERIIKSISGMGVLTPDGVRVQATVSLGLAMYPEHGKSAKDLFLVADNMMYKVKG 613

Query: 687 RGGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N++                 I   +  A+E   L   + PI+ L   E+   E L++
Sbjct: 614 EGKNNIAEPEEQDVTRIFKDESEINFRVYQALEEETLLPYFQPILDLNSGEVQAHEVLMR 673

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I++S+F+  A  + ++  ++  ++E+  +       +       + INI  K
Sbjct: 674 IPATDGTMIAASDFIEAAGRIGLLHKLDHILMEKAFKHAGEQNYRGE-----LFINITPK 728

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             +  E    ++ L  K    P RI    +E   + N    +  + R++  G    +DDF
Sbjct: 729 SFIFPEFFPRIKELSHKYGIPPQRIIFEVTERDTIRNVSMLQKFVTRMKSEGYRFAVDDF 788

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGE 921
           G+  S   YL   P D +K  G  +    +    +   +SII +A+ ++   +A+ +  E
Sbjct: 789 GSGYSSFKYLKLFPIDYLKIEGEFIRNILDDHDFMAYTKSIITLARELKVKTVAEFVEDE 848

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +     +G DY Q  H+  P  
Sbjct: 849 RIMTACRELGVDYGQGYHIGRPAS 872


>gi|320333008|ref|YP_004169719.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
 gi|319754297|gb|ADV66054.1| diguanylate cyclase/phosphodiesterase [Deinococcus maricopensis DSM
           21211]
          Length = 776

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/520 (23%), Positives = 217/520 (41%), Gaps = 32/520 (6%)

Query: 442 SGSMHGPIRNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             ++       L   H +          L+  +      LQ   R R AD +    + R 
Sbjct: 275 RATLQAGALRALSAAHRDLGQHAAALDALEQAMQLEERTLQQRRRNRTADLERAHALGRA 334

Query: 500 RPMSNSNGDILRYIGIANDITEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
                +          A +  EQ+     E +L     D LTG+ N  ++ +     L  
Sbjct: 335 EAERQAAER-------AREQAEQQVMAHAERLLHLTTHDQLTGLLNAAAWHEVARRAL-- 385

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                    TV V+D+D++K +ND LG A GD++L  L RR+   L+  ++ AR+ G+ F
Sbjct: 386 ----GVGGATVGVMDLDRFKVVNDTLGHAAGDELLAELARRLRGALRPGELTARMGGDEF 441

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L       +    A  +  +I  P+ L +R + V  S+G A       TS  ++  A
Sbjct: 442 LLLLPGPRIGGQ--KRAAEILAAIQGPVTLRDRTVEVQMSLGVAFGPDDANTSERLVSLA 499

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           + AMY  K  GG  +          D + ++  L  A+      L + PI+R    E+VG
Sbjct: 500 DAAMYRGKRAGGGGLTLHAGE-AGEDLLELEGALVQALRAWTFTLAHQPIVRAGTGELVG 558

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +E+L++W       I  + F+ + E+   I      +L     +            I + 
Sbjct: 559 VESLLRWRWQDR-FIGPNLFIPLLEQRGDIVEATAQVLRHACLEAA-------PLGIDVS 610

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+++DL D  +   ++A ++++   P R+ L  +ES+++ +P  +  ++  L + G+ 
Sbjct: 611 VNISARDLHDGFVMNAVKAAVAESGLPPGRLVLELTESMLLTDPGHASAVMEELHEYGVR 670

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETTI 913
           + +DDFGT  S LS L  +P   VK + S + G          A+L  II +A  +    
Sbjct: 671 IAIDDFGTGYSSLSLLAKLPVTRVKIDRSFIGGLAPDAPHRERAVLEGIIGLAHGLNLAT 730

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + + +  +  +     MG D IQ      P+    +   L
Sbjct: 731 VLEGVETQAQLDAAGLMGADLIQGYFTGRPMPIRDLRARL 770


>gi|296106676|ref|YP_003618376.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
 gi|295648577|gb|ADG24424.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 387

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 180/382 (47%), Gaps = 4/382 (1%)

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD +L  + +R+   L+  D +ARL G+ F +IL   NN  +    A  M +
Sbjct: 2   NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ 61

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++  P  +    + +  SIG A +  +   +  + KNA++A+Y+AK  G N+ + F  S 
Sbjct: 62  TMGQPFLIKGHTVMIGLSIGIAYFPDAGEEAITLRKNADIALYNAKECGRNNCQIFTPSL 121

Query: 700 FRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +     +    +L LA+E  E +LVY P + L    +VG+E L++W HPK G +   EF
Sbjct: 122 RKQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEF 181

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  I  ++L    R  + W+         + INI+            ++ +
Sbjct: 182 ISVAEHFNLIIPIGEWVLRTACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHI 241

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       ++L  +E+  +    +    L  LR +G+ L  D+FG+  S LS+L   P
Sbjct: 242 LQEYQMPSDWLELEITEATAVNFLGKIEDTLSTLRNMGVKLAFDNFGSGYSFLSHLKNSP 301

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             ++K   +L+  +   E    I++S I +++ +   ++   +  E  +  L    C  +
Sbjct: 302 VQSIKLKQTLIEDAHLRENDNLIIKSTIALSQELGLNVVVGGVETEEQLNFLRSSHCFEV 361

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q  + + PL    + + ++ER 
Sbjct: 362 QGYYSSKPLTVGQMTQFIEERN 383


>gi|296534351|ref|ZP_06896816.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296265322|gb|EFH11482.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 395

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L    +R+ E     ++LA L G  F ++L     +      A    ++IA 
Sbjct: 1   GPAAGDALLRQAAQRLAEGGMAGELLAHLGGEDFALLLPGPVTAEAAERRAELALRAIAQ 60

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  +      +  SIG A        +  +L+ A +AM  A+  G   +  F        
Sbjct: 61  PFFVEGSVAMLGLSIGIALSPRHGAGADALLQAASIAMQRAREEGRGGIRPFHPGMLQRL 120

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  +++DL  A++  E  L Y P+I L    + G EAL++W HP+ G +S +EF+ +A
Sbjct: 121 EQRQRLRQDLRAALQRGEFSLAYQPLIDLPSGRVGGFEALMRWQHPRCGAVSPAEFIPVA 180

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +I A+  + L         W +      + + +N++        L E ++  +   
Sbjct: 181 EESGLIVAMGAWALRTACATAAGWPE-----GMRVAVNLSPAQFRSPGLVETVRQALDGA 235

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P R+KL  +ESV++ +   +  +L  LR +G+ + LDDFGT  + LSYL   PF  +
Sbjct: 236 GLAPGRLKLEITESVLLQDSAANLAMLHALRDLGVMVVLDDFGTGYASLSYLQRFPFHKL 295

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +      +    I+ SI+ +A+ +     A+ +  +  +  L R GC  +Q   
Sbjct: 296 KIDQLFVRRLIERDDSRKIVTSILGLARALGIGTTAEGVESQEQLDWLAREGCGQVQGFL 355

Query: 940 VASPLGFNSILKLLKER 956
           +  P+   ++   L+  
Sbjct: 356 LGRPMPPEAVAGYLRRH 372


>gi|268608111|ref|ZP_06141839.1| hypothetical protein RflaF_01244 [Ruminococcus flavefaciens FD-1]
          Length = 766

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/785 (17%), Positives = 283/785 (36%), Gaps = 63/785 (8%)

Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDF 236
                + ++    L+ G        +  +       +R    I   A   +++  +    
Sbjct: 28  RQQTIQKSLGRVLLFSGF------GVIAYTLAMIFSSRLLADIGYSAYHIILVAMVLALA 81

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAIL 296
            F+S+   + +           ++L+  +I+ L  +LH               +A    +
Sbjct: 82  SFVSEYTGVRTLFSKELYVVGVLSLADVVILALNPFLH-----------CVFRVAKTDDI 130

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP--AWILIFIWFIGL 354
              ++YY     ++     +   L     +I    K      +     A IL+ I  +  
Sbjct: 131 IGHTYYYISRRETLYIYHFSLAYLIMALAVIMLIKKILRSPKIYKLKYAIILLIIIAVMA 190

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
             A    +D+      +    V   +           +  Y  +G+          V   
Sbjct: 191 GHAFYVTMDSTFDYSIIFYAAVAAALFY--------FSIIYVPRGLMEKL--MFFTVANM 240

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASG--SMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            D +   DI                       +   I  W                   +
Sbjct: 241 KDGIICVDIDGKVAHYNKTAKEYCCATDDGSDVSEYITEWF------------ANNPEAL 288

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                  +     R  + +    I   + + +S+G  +    I +D T++ K L      
Sbjct: 289 TNDELTWKET---RNINGEKCRFINDYKRICDSDGKYVGCFFIYHDRTKEYKRLAEEKYR 345

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +  D+LTG+ N++ F  + + ++     +      ++  D+  +K IN++ G+  GDD+L
Sbjct: 346 SSHDSLTGLYNKEHFCKKASKLI---KENPGTSYVIVCTDVKSFKIINEIFGVHRGDDLL 402

Query: 593 VSLTRRIGELLKFPDILA-RLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLER 650
           + +   +  L    + +  RL+G+RF + +  ++ +   +   A              E 
Sbjct: 403 LCMAGDVNSLAAEDEYVCGRLTGDRFAVCMNKDHYSEEALLGIASKFGNFF------GED 456

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIK 708
              V    G       +++ S M   A  A++  K    + V  +      S      + 
Sbjct: 457 VFKVQMHFGVYEVKDRELSVSVMCDRANFAIHTIKDSYQSVVAYYNEKLRDSFLSEQKMI 516

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +   A+ + +      P I      I G EAL++W HP  G +S  +F+   E   +I 
Sbjct: 517 SEFEAALGSGQFIAYIQPQISAE-GHIRGGEALVRWLHPSEGMVSPGKFIGTFETTGLIS 575

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +M E     +  WR +      ++ +NI+ KD    ++   + +LI K    P  +
Sbjct: 576 RLDSYMWELACIQLCKWRSKGLNDN-YLSVNISKKDFFLMDVYGTLTSLIEKYSLDPKCL 634

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E+ +M  PE+ + L+ +LR  G  + +DDFG+  S L+ L  +  D +K +   +
Sbjct: 635 HLEITETAIMNIPEKQQHLISQLRDYGFIVEIDDFGSGYSSLNTLKDLYVDVLKIDMGFL 694

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             T +TE+ + ILR II +AK++   +I + +  +  ++ L   GCD  Q    A P+  
Sbjct: 695 EKTENTERSMKILRMIIELAKSLNMAVITEGVETDEQVRFLRECGCDVFQGYFFAKPMEI 754

Query: 947 NSILK 951
               +
Sbjct: 755 ADFEE 759


>gi|114797349|ref|YP_759010.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114737523|gb|ABI75648.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 591

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/585 (21%), Positives = 236/585 (40%), Gaps = 48/585 (8%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  S   V+  D     V        I G     M+         +H    D  R +   
Sbjct: 11  INASPYPVFAKDASHRWVYGNSAFEMIAG----EMNFVGEKDSLLVHPVCIDRIREVERK 66

Query: 471 FVGYR---------RGRLQYEFR--VRAADNQFHWMIIRIRPMSNSN-------GDILRY 512
            +             G +    R  +R    +     I I  +   +         + R+
Sbjct: 67  VLAGEDSLDEETLITGAVLLTIRRPLRLPSGETLIAGIIISIIHAPDVASSGSKASLRRH 126

Query: 513 IGIANDI----TEQKKSLEGILCN-----------AFQDNLTGIPNRQSFLDRLTTILDL 557
                D+    TE+ + LE  L             A  D  TG+ NR  F   L   +  
Sbjct: 127 ELAIADVRKVDTERTRWLEQRLELVEQAETAATKAARTDPATGLRNRMGFDLDL-ATVAE 185

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNR 616
                +    +  +D+D++K IND  G   GD VL S+ +R+  +       LAR+ G+ 
Sbjct: 186 EPLPPDKILCLAFLDLDRFKFINDSFGHKAGDTVLKSVAKRL--ITWPGVRSLARMGGDE 243

Query: 617 FGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
           F I+          + +    MR+ I   + + ++ I V+ S+G +           +  
Sbjct: 244 FAILFDHPRVAPHVLVENISLMRQRIFRAVRVGDKLIQVSGSVGLSVHGLDADDLESLKL 303

Query: 676 NAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           NA+ A+  AKH G   V+ F    +     R  ++ DL  A+  +++   + PI+     
Sbjct: 304 NADTALIEAKHLGREQVKLFDAGLALRTYRRHTLERDLRQAIARNQIVPAFQPIVNAKTR 363

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G+E L +W+HP+ G I + EF+ IA E  +I A++L ++ R    + +W     +  
Sbjct: 364 AIEGVEVLARWNHPQLGPIPAQEFITIATECGLISALDLSIVRRACGPVRNWLSDNRLR- 422

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            F+  N +S +++       + +LI +      ++ +   ES ++ + +R+R  +  L+ 
Sbjct: 423 -FVSFNASSLEIVRPGYAAEILSLIRRCGVQAEKVCIELVESAIIHDIDRARANICILKD 481

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIET 911
            G+ + LDD+GT  S L  L  +P D +K + S++    +   A+  + S++ +AK    
Sbjct: 482 RGVKIALDDYGTGYSNLRALLDLPIDRIKIDRSIIGDIGDDERAMKLVLSVVQLAKLFNA 541

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +IA+ I  E     L  M C+++Q  H +  +       LL  +
Sbjct: 542 ELIAEGIEDETQATYLEGMNCEFLQGFHFSPAVDAQQFDLLLTRQ 586


>gi|261251146|ref|ZP_05943720.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938019|gb|EEX94007.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 637

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 188/444 (42%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++ +   I      D  TG  NR +       +L         +  V+ I     
Sbjct: 187 QEIDKRRAAERTIRYQQRHDLGTGFLNRVALEQHTNRLLATITPHSKHKVGVIHIGFTNG 246

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++I    G A+ +++L+   +R+     +  I AR        +  S +    I   +  
Sbjct: 247 RRIQAKHGYAMWENILIEFKQRLISQSNYKLITARPRSTDLVFVFESNHLDEDINLLSRE 306

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESF 695
           + +       L    + + + IG AS      +S  +LK A  AM   K  G        
Sbjct: 307 LVEVSQSAFYLDGENLHLHSYIGIASS-DDTSSSKTLLKYAAGAMQSCKDSGHKFSFHCQ 365

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +S  + +   ++  L  AV N +L L + P +     + +G EALI+W HP  G+IS+ 
Sbjct: 366 HISDTQKNINQLESYLLQAVRNDDLLLYFQPKVSPKTHKWIGAEALIRWRHPILGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L    +    WR    +    + IN+++  L   +    ++
Sbjct: 426 TLIHLAEQNGLIFEVGSFVLRSAIQKAAEWR--GKVQDFKVSINVSAVQLQSPQFTTQIE 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++      + I+L  +ES ++ +   ++  L  L  +G++L+LDDFGT  +  +YL  
Sbjct: 484 DLLAAYQLPGAYIELEITESGLIADEVVAKNTLQSLSDLGVTLSLDDFGTGYASFNYLKK 543

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +    ++E+   I+RSII +AK ++  +  + I        +   GCD
Sbjct: 544 FPFDAIKVDRSFVQQLDTSEEDKEIVRSIISIAKKLDLEVTVEGIENPDHEAFIVSEGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+  +     L  + 
Sbjct: 604 VGQGYLYGKPMPCDEFESHLINQN 627


>gi|153002250|ref|YP_001367931.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151366868|gb|ABS09868.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 739

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 225/519 (43%), Gaps = 22/519 (4%)

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +    +   +       L        G+   E  +++   Q  W+ +    +S     + 
Sbjct: 221 DLFDMVREEEHAMLTDTLHVVREGVLGQAWCELPLKSIH-QLAWLKLSFSQISGDKDTL- 278

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D++   V  
Sbjct: 279 --VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---HAHDDMPICVAF 333

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D+++ IN++ G   GD +L  +  R+ +L++  DI+ARL G+ FG IL+   N    
Sbjct: 334 LDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFG-ILMHYCNVDSA 392

Query: 631 ADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              A  +   +         R   V+ S+G A           ++  A+ A   AK +G 
Sbjct: 393 KQIAKRICTQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGR 452

Query: 690 NHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
           N    +  S  + +R+  +     D+  A+  ++  L +  I+ L  EE  + LE L++ 
Sbjct: 453 NGWHLYSASDPKMNRLYTEMMASVDIVGALALNQFELYFQSIVPLNREESGLHLEILLRM 512

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S + F+  AE   +   ++L++ + + +      D      + + +N+++  
Sbjct: 513 VQANGTIVSPAIFLPAAERYNLASKVDLWVFDNLLKWGGCHLDIWQQLDL-VSVNLSATS 571

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D+E    ++  +        ++ +  +E+  +   +++  LL  LR +   L LDDFG
Sbjct: 572 LGDHEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFG 631

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S  +YL  +  D VK +G  +    E     AI++SI  + +++   ++A+ +  + 
Sbjct: 632 AGFSSFAYLKRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQD 691

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK-----LLKER 956
             ++L  +G DY Q   +  P+    +        L++R
Sbjct: 692 IGRKLQTLGVDYAQGYAINKPIRLAELTSGLSRPWLEKR 730


>gi|119944953|ref|YP_942633.1| fused sensor protein/response regulator [Psychromonas ingrahamii
           37]
 gi|119863557|gb|ABM03034.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 934

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/546 (18%), Positives = 206/546 (37%), Gaps = 42/546 (7%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           DI    +    +   I G +   + G   + +   H ++ ++    + + +  ++   + 
Sbjct: 415 DIQGVIIYVNDNFCKISGYSREELIGKNHSIVR--HPDNSNSIFKNMWTTITAKKV-WKG 471

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             + RA D   +++   I P+ +  G I+ YI    D+TE  K  E I     +D LTG+
Sbjct: 472 TLKNRAKDGSTYYVKTLIMPILDDQGHIVSYIAARTDVTELIKKDEIIKQQ-NEDKLTGL 530

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR + +D+L  I            T+++++ID++  IND  G   GD  L      +  
Sbjct: 531 KNRSALIDKLKDI-------KREDATLILMNIDRFSDINDYYGYEKGDKTLEHFASVLKG 583

Query: 602 LLKF-----------PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
                             + R+SG+ F I+     +       A  +         +L+ 
Sbjct: 584 KYVEFSRISSDVSSVSCDIFRISGDEFAILCEHSLDKKIKEMIAGLIMSLENEVYEILDD 643

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---I 707
           +IT+  S G A+   +     E+   A +A+   K             +  +       +
Sbjct: 644 KITLLLSCGVANGAKN-----EIYNLAHIALKENKKDNNTVTFFNDNMNLYNKIAENIKV 698

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +   + N +    Y  I+    ++I   E LI+        ++   F+  A++  + 
Sbjct: 699 IASIKEGILNDKFVPFYQGIVNNKTKKITKYECLIRLKEENGKVLTPYFFLEHAKKAKLY 758

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + + M+ +                    IN   +D+    +   +   + +     +R
Sbjct: 759 YKLTMIMIRKSFEKFAGNNSDF-------SINFTLQDIQSETVVSMLMDYLERYQC-GNR 810

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +   ES  + N       + +++K G  + +DDFG+  S   YL  +  D +K +GSL
Sbjct: 811 LIIEIVESEGIENFNELSDFIKQIKKYGCKVAIDDFGSGYSNFHYLSKLDVDYIKIDGSL 870

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +        ++A + SI+  AK +    IA+ +  +     L  +G D+ Q  + + P  
Sbjct: 871 IKNIDNDPSQLATVESILLFAKKMNIKTIAEFVETKNIYDILNDLGVDFSQGYYFSKPQ- 929

Query: 946 FNSILK 951
              I K
Sbjct: 930 -EEIEK 934


>gi|118591951|ref|ZP_01549346.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stappia aggregata IAM 12614]
 gi|118435594|gb|EAV42240.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stappia aggregata IAM 12614]
          Length = 620

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/615 (20%), Positives = 240/615 (39%), Gaps = 23/615 (3%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
               +    +   L     LI         +   +      G  +D     L V  + + 
Sbjct: 4   FLGNVPGQHLLFVLGIASALIAASYFCGRRRVSNSVSSGVSGFGNDAAILQLVVEHAHEG 63

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-----IHINDRDNFRTILDSFV 472
           +   DI      T P  + I G ++  + G             +   + + FR  L  F 
Sbjct: 64  LVMQDIYGRIEWTNPAYSRITGYSAEEVRGRRPQEFILPPANQLSAEEVETFRYDLTRFR 123

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------EQKKS 525
                 +      R  D +  W  +    +     +  + I I  D+T       E + +
Sbjct: 124 SGTEELILN----RRKDGELFWNQLTFAVVEGKTLEDTKIILICRDVTSQVEHVKELENA 179

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A  D+LTG+ NR      L   +     D + R  ++  D+D +K IND  G 
Sbjct: 180 RTRLKQQAEHDDLTGVANRSKLNSYLMERIAE-GVDGSARIGIIHFDLDHFKDINDSHGH 238

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD VL  +   +  +L    ++AR+ G+ F  ++       ++ D    + + +A P+
Sbjct: 239 SAGDTVLRHVAMVMSRVLGNRGLVARIGGDEFVAVVSDPQGPEEMEDLGTRILEGLAKPV 298

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
            +   E+ V  S+G     ++  ++SE++  A++A+Y AK  G + +  +  +  +    
Sbjct: 299 RVDRHEVRVAGSVGLVLADAATASASELINCADIALYAAKRSGRSQISWYTDALGAAHRH 358

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R MI   L   +EN  L L+  P   L    I+G EA   W HP  G +     +   ++
Sbjct: 359 RRMILAQLDEDLENDGLSLMLIPQYDLESRRIIGYEAAACWLHPSEGLVDPVSLLSAQDD 418

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I  F L     ++   R+  +    F+ +N++   L +      ++    +  +
Sbjct: 419 ARRITQIERFALREGLCEVKRLRE-VSNSAYFVSVNLSGASLKEAGFLVQLRQAACEAGF 477

Query: 824 SPSRIKLSFSESVV-MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             S I +   E ++    P+     +  L++IG  + LD FG+       L Y+  D +K
Sbjct: 478 KTSDIVVELDEKIIRFDEPDGLAGSVDLLKEIGCRVALDKFGSGHGGAGQLIYLNADQLK 537

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
               L+ G  E  ++  +++SII +A N+  TI A  +     +  L + GC  +Q   +
Sbjct: 538 LCPMLVAGLEESNEKRQLVQSIIRLAGNLGLTISAAGVDTARQVDMLRQFGCTMVQGKVI 597

Query: 941 ASPLGFNSILKLLKE 955
           A PL  +     ++E
Sbjct: 598 ADPLSAHEAEIHMRE 612


>gi|294341168|emb|CAZ89569.1| Hypothetical protein putative EAL and GGDEF domains [Thiomonas sp.
           3As]
          Length = 931

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 207/441 (46%), Gaps = 15/441 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LT + NR    +RL   L+ +         +++      K++ND  G 
Sbjct: 366 QQRLRTLAITDPLTAVGNRTLLRERLQVALETAWRRQGEFGLLLLDLDGF-KQVNDAYGH 424

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAM 643
           + GD +L    +R+  +L+  +++AR+ G+ F ++L     +  +     A  +  ++  
Sbjct: 425 SAGDALLRETAQRLQAILREGEVMARMGGDEFAVLLTEGLGSGEIAAEAAAQRILSALRQ 484

Query: 644 PINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           P +L   R+ +++ S+G A +      +  +L+ A+LA+Y AK  G +    F+    R 
Sbjct: 485 PFDLGVGRQASISVSLGCALYPQDGGDAETLLRRADLALYAAKAAGRDRYLRFKPDFERE 544

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +    + E +  A++   L L Y PI+          +VG+EAL++    + G + +++
Sbjct: 545 AQRQKNLLESVEAALQQGRLSLNYQPIVAIGGDPARPAVVGVEALLRLQTEQGGQMVAAD 604

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F  + +   + +AI  F+L++     + WR +     + I +NI+++ LL  E  + +  
Sbjct: 605 FASVLDHGRLARAIGRFVLDQALTQGVQWRAEGLE--LHIAVNISAEHLLAPEFLDDLHQ 662

Query: 817 LISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +     +  S + L  +ES  + N E++R +L   + +G+S+ LDDFGT  + L+YL  
Sbjct: 663 ALHNHPGFPASGLMLEVTESAPLRNLEQARQILQSCQDLGLSVALDDFGTGAASLTYLQQ 722

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P  ++K + S +       K  AI+ +++  A  +   +I +       +  L  M C 
Sbjct: 723 LPAQSIKIDQSFVRDMVNDPKDFAIVSAVVTAANLLGLEVIGEGAETLEHLSVLAAMNCT 782

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q   +A PL  +++   ++
Sbjct: 783 LAQGYAIARPLPADAVATWVQ 803


>gi|296114446|ref|ZP_06833099.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978802|gb|EFG85527.1| diguanylate cyclase/phosphodiesterase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 575

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/548 (23%), Positives = 240/548 (43%), Gaps = 14/548 (2%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIH-INDRDNFRTILDSFVG 473
            IV   D              +   ++  + G     L    H       FR +  +   
Sbjct: 28  LIVAVTDRNGIITYVNQKFCDVSQYSAAELLGQTHRILNSGTHTP---AFFRDMYRTIYS 84

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            +          R  D   +W+   I P   S+G+I+ ++    +ITE   + E +   A
Sbjct: 85  GQT--WHGNICNRTKDGSHYWVATTIIPHHGSDGNIIGFVAARFEITELMNTKERLKIQA 142

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D +TG+ NR  F   L   L+     D     +++ D+D +K+IND+ G   GD VL 
Sbjct: 143 ATDTMTGLLNRGGFNASLIATLEQCKQCDTDERVLVMFDLDGFKQINDIHGHHAGDTVLR 202

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++ RRI EL+   +  +RL G+ F IIL        +      ++  +  PI+L    + 
Sbjct: 203 TIGRRIVELVGSEEATSRLRGDEFAIILHKSLREHSLETLLTRLQALLEEPIDLESAIVR 262

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
           V+ SIG    T++  T  ++ KNA++A+Y AK  GG     F  S  ++  +R  I ++ 
Sbjct: 263 VSGSIGATPLTAT-DTLEDVQKNADVALYAAKQAGGKQARMFSASLHKTALERAKILKEA 321

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              V+ ++  + Y PI+     +I   EAL++W HP+ G +S+  F  +  +  + + + 
Sbjct: 322 RAGVKQNQFEVYYQPILNCHTGQIEQAEALMRWHHPQRGLLSAGAFTDVFADSGLAQEME 381

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +++    DI  W+     P + + +N++  DLL  +    + + I      P+   L 
Sbjct: 382 THLVQSFHDDIAMWKKAGL-PNLRLAVNLSHLDLLSLDQQVDLLSEIKHLKMDPNTFMLE 440

Query: 832 FSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT- 889
            +E ++     E+S++ L  L + G  L LD+FG     LS L  +P  ++K + SL+  
Sbjct: 441 VTEHMLQGRRAEKSQMRLKSLAEDGFGLALDNFGHGSVRLSTLKNLPLKSLKIDRSLVRY 500

Query: 890 -GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             + E+   IL S+I +      ++  + +           +G DYIQ   ++  +    
Sbjct: 501 IDTREQDRDILASLIKLGHGFGLSVTVEGVETRKQFDIAAELGVDYIQGFFISRAVSATD 560

Query: 949 ILKLLKER 956
           ++K+ +E 
Sbjct: 561 LVKITREH 568


>gi|260770121|ref|ZP_05879054.1| predicted signal transduction protein [Vibrio furnissii CIP 102972]
 gi|260615459|gb|EEX40645.1| predicted signal transduction protein [Vibrio furnissii CIP 102972]
 gi|315182635|gb|ADT89548.1| predicted signal transduction protein [Vibrio furnissii NCTC 11218]
          Length = 571

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/551 (20%), Positives = 218/551 (39%), Gaps = 14/551 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R         + ++  D         P      G  + ++   +  W   +H  DR++  
Sbjct: 22  RLMHIFDVFSEGIFHMDEQGCMTFYNPGFYQQFGFNASTI--TLNEWFTVVHPQDREDLE 79

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   V    GR   ++R R ++ Q+ W+          +G+    +G   DI++QK  
Sbjct: 80  ARVHHHVA-SIGRATAQYRARKSNGQYVWIEGTA-VTCQRDGE-TFMVGSHRDISDQKLM 136

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   AF DN++G+ N    L  +  I      DD    T++ I ID  K   +  G 
Sbjct: 137 ESYLNQAAFYDNVSGLANATKLLKDIDQI----KLDDQKSGTLLYIQIDDIKSYLNQYGT 192

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            V   +L  L   +  +        R+  + F ++L    +   +      +    A   
Sbjct: 193 EVVQHILHHLISALNSVTNPDTEFYRVRSDDFALLLSQNISHDALTALCHDILDRYAKSA 252

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSD 703
                    + SIG     S+  ++ +++  A     +A  K R    + + +       
Sbjct: 253 QEHGHLFGDSMSIGVYPEFSNAYSAEQIINIASRTCQYAGEKKRSRIEIYNGKTQRAVDR 312

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  L  A+++  L + + PI+     ++   EAL++W   ++G I   EF+ +AEE
Sbjct: 313 FFYIERGLKEALQSRSLSVKFQPILNAQSGQVSSFEALVRWRSKEFGEIFPDEFIPVAEE 372

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   + E+    I  +        I + IN++   LL++     ++ + S+   
Sbjct: 373 KGLITDLGYQVFEKACEFISRYNKVNG-VNIRVNINVSVLQLLNSTFPSNIKMMASEAGI 431

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  I L  +E+V++   + +   L  L K+G  L+LDDFGT  S +     +P + +K 
Sbjct: 432 DPQSIVLELTETVILDGNKNALNQLETLSKMGFQLSLDDFGTGFSSIHSFFDLPLNQIKI 491

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S+ T   + +     L  II ++++    I+ + I      ++   MG  Y+Q    +
Sbjct: 492 DRSMATKTLTNQASEEYLSFIIQLSRSKGVDIVIEGIENSDMFRKFRAMGASYLQGYWFS 551

Query: 942 SPLGFNSILKL 952
            PL   S  + 
Sbjct: 552 KPLSLASASRY 562


>gi|239993848|ref|ZP_04714372.1| Intracellular signaling protein (GAF,GGDEF,EAL domains)
           [Alteromonas macleodii ATCC 27126]
          Length = 866

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/423 (26%), Positives = 213/423 (50%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+K+    ++ +A  D+LT +PNR  F  RL   +            V+ ID+D++K 
Sbjct: 429 IEERKEIELKLIHDAHHDSLTDLPNRAMFTSRLELAIASKQRYSENMFAVLFIDLDRFKV 488

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD+ L+ + RRI   ++  D+LARL G+ F ++L +  +   + + A  + 
Sbjct: 489 INDTLGHHAGDEFLIEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDEADVEEVASRII 548

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            SI+ P  L  RE+   ASIG A   +    + E+L++A+ AMY AK  G      F   
Sbjct: 549 SSISEPFLLDGREMYSGASIGIAHLETYYRAADEVLRDADAAMYQAKTLGRGRFVMFDKS 608

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     + + ++ +   A+   E      P+I+L D+  +  E  I+W HP +G I+  +
Sbjct: 609 MRDRLIEELELENEFRRALREEEFDYFLQPVIKLNDDSTLYKEMYIRWSHPAYGKIAREQ 668

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F  +AE   +   ++LF L +    +  +    + P   I +N++   LL   +   M  
Sbjct: 669 FRQVAEHSGLTLDLDLFQLTKACELLNHY-KNTDDPINKIAVNVSINHLLQASMVNQMIN 727

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I  +  +PS++   F E+ +    +     + +L++ G++L LD+FG+  + LSYL   
Sbjct: 728 VIETSGITPSQLVFEFDENDLNRRSQFILPAIKKLKRAGVTLVLDNFGSGLASLSYLFAY 787

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFD +K +   +     +++ + +++S++ ++++++  +IA+ +  +  +  L  + C Y
Sbjct: 788 PFDFIKIDHRFVKSLPRSQRNLKLIQSVMLISEHLKFQVIAEGVDSQAQLDALNEIECIY 847

Query: 935 IQD 937
            Q 
Sbjct: 848 GQG 850


>gi|37680251|ref|NP_934860.1| signal transduction protein [Vibrio vulnificus YJ016]
 gi|37198998|dbj|BAC94831.1| predicted signal transduction protein [Vibrio vulnificus YJ016]
          Length = 571

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/551 (20%), Positives = 219/551 (39%), Gaps = 13/551 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R         + ++  D                G+ SG +   +  W   +H  DR    
Sbjct: 22  RFMHIFDVFSEGLFHMDEQGVMSFYNKQFYQQFGIESGIIA--LDTWFELVHPLDRSKLS 79

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D  +     R+  E+RVR  +  + W+          +G  +  IG   DI+E+K  
Sbjct: 80  ARVDDHLMCEDLRVTSEYRVRKPNGHYVWIEGTAVTRKTDSG--IYLIGSHKDISERKLM 137

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   AF DN +G+ NR     RL   ++ S    +L   ++ I I+  K      G 
Sbjct: 138 ESYIHQVAFHDNASGMANRS----RLLLDIEESFQASSLPYALIYIQIEDIKSYLSHYGS 193

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            + + V+ S+   +  L      L R+  + F ++L       ++ +    +++     +
Sbjct: 194 EILNHVVQSMLTAVSHLPGQVARLYRVRDDDFAVLLEGNFTEQQLLNICSTIKQRYHDTV 253

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSD 703
               + +    S+G      +     E+L+ A     +A  K      + S R       
Sbjct: 254 VEQGQLLGTGISMGLIPRIENTHEGEELLRKAARTGQYASKKKANKIALYSARTQQIVDR 313

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++ L  A+E+  L + + PI+     E+   E L++W   ++G I   EF+ +AE 
Sbjct: 314 YFFIEQGLQSAIESQSLNVKFQPIVCAKHLEVKSFETLVRWRSKEFGEIYPDEFITVAEN 373

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+  +    I  +        I + +N++   LL++   + +  + S+   
Sbjct: 374 KGLIIDLGYFVFRKACEFIQRYNQAN-NKNIRVNVNVSVLQLLNSNFPQRIHEMASEYGI 432

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SP+ I L  +E++++ N   +   L +L K+G  L+LDDFG   S L+    +P   +K 
Sbjct: 433 SPNSIVLELTETIILDNNAAAIEQLNQLSKLGFHLSLDDFGAGYSSLNSFFDLPMKQIKI 492

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S+   S       A L  +I + +N +  ++ + I      +    MG  Y+Q    +
Sbjct: 493 DKSMAWRSLKNPDLTAYLSFLIQLCRNNQIDVVIEGIEDAEMYQTFRNMGVSYLQGYWFS 552

Query: 942 SPLGFNSILKL 952
            PL   S  + 
Sbjct: 553 KPLSLASASRF 563


>gi|27365601|ref|NP_761129.1| putative signal transduction protein [Vibrio vulnificus CMCP6]
 gi|27361749|gb|AAO10656.1| Predicted signal transduction protein [Vibrio vulnificus CMCP6]
          Length = 571

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/551 (20%), Positives = 218/551 (39%), Gaps = 13/551 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R         + ++  D                G+ SG +   +  W   +H  DR    
Sbjct: 22  RFMHIFDVFSEGLFHMDEQGVMSFYNKQFYQQFGIESGIIA--LDTWFELVHPLDRSKLS 79

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D  +     R+  E+RVR  +  + W+          +G  +  IG   DI+E+K  
Sbjct: 80  ARVDDHLMCEDLRVTSEYRVRKPNGHYVWIEGTAVTRKTDSG--IYLIGSHKDISERKLM 137

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              I   AF DN +G+ NR     RL   ++ S    +L   ++ I I+  K      G 
Sbjct: 138 ESYIHQVAFHDNASGMANRS----RLLLDIEESFQASSLPYALIYIQIEDIKSYLSHYGS 193

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            + + V+ S+   +  L      L R+  + F ++L       ++ +    +++     +
Sbjct: 194 EILNHVVQSMLTAVSHLPGQVARLYRVRDDDFAVLLEGNFTEQQLLNICSTIKQRYHDTV 253

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSD 703
               + +    S+G      +     E+L+ A     +A  K      + S R       
Sbjct: 254 VEQGQLLGTGISMGLIPRIENTHEGEELLRKAARTGQYASKKKANKIALYSARTQQIVDR 313

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I++ L  A+E+  L + + PI+     E+   E L++W   ++G I   EF+ +AE 
Sbjct: 314 YFFIEQGLQSAIESQSLNVKFQPIVCAKHLEVKSFETLVRWRSKEFGEIYPDEFITVAEN 373

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  F+  +    I  +        I + +N++   LL++   + +  + S+   
Sbjct: 374 KGLIIDLGYFVFRKACEFIQRYNQAN-NKNIRVNVNVSVLQLLNSNFPQRIHEMASEYGI 432

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SP+ I L  +E++++ N   +   L +L K+G  L+LDDFG   S L+    +P   +K 
Sbjct: 433 SPNSIVLELTETIILDNNAAAIEQLNQLSKLGFHLSLDDFGAGYSSLNSFFDLPMKQIKI 492

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S+   S       A L  +I + +N    ++ + I      +    MG  Y+Q    +
Sbjct: 493 DKSMAWRSLKNPDLTAYLSFLIQLCRNNRIDVVIEGIEDAEMYQTFRNMGVSYLQGYWFS 552

Query: 942 SPLGFNSILKL 952
            PL   S  + 
Sbjct: 553 KPLSLASASRF 563


>gi|257092123|ref|YP_003165764.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044647|gb|ACV33835.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 821

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/587 (18%), Positives = 239/587 (40%), Gaps = 22/587 (3%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRD 426
           +  +    +   + +    ++H             + + R +  +      +        
Sbjct: 218 RLGISFNAMAETLKLRVAALEHSETQQRLLLKAAREEQARLTTLLGAMNSGIMFVGSNGR 277

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      A I  LA  +    +   +P +           +++ +    G++     ++
Sbjct: 278 VIYANGAFARIWALADLTTGRSLAEVVPLLIRQTIPADAVHVEAILDTGVGKVARGVELQ 337

Query: 487 AADNQFHWMIIRIRPMSNSNGDI-LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
             D +   +  R++P+  + G      I    DIT ++++ +     A  D LT + NR+
Sbjct: 338 TVDGRI--ITQRMQPV--AEGSSGSGCIWFHEDITLERQTQQRA-YQALHDPLTKLLNRR 392

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
              +         A  DN    ++ ID+D +K  NDV G   GD++LV++ + + + ++ 
Sbjct: 393 GLYEA-LQAAIAQAIADNAPLALLFIDLDDFKHANDVGGHRTGDEILVAVAQTLSDQMRK 451

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWT 664
            ++ ARL G+ F ++          A  A  +     +     + + + +  SIG A+  
Sbjct: 452 GELAARLGGDEFAVLCPGNGAHAASAIAARLVEAVGGLRFAAADMQTLRIGCSIGIATCP 511

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD----RVMIKEDLCLAVENSEL 720
           +      +++  A+ AMY AK  G N    +     RS     RV     +  A+++   
Sbjct: 512 NDAREEDDLVACADTAMYLAKQSGKNGWAVYHNDPLRSRAESARVNWNARINRALQDQRF 571

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKW--GNISSSEFMLIAEELCMIKAINLFMLERI 778
            L +  + R  D ++   EAL++          IS ++F+  AE    ++ I+ ++    
Sbjct: 572 VLHFQAVHRAADLQVTYFEALVRMVDETDPSRLISPADFVPHAELSGKVRQIDRWVFLNC 631

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
           AR + S       P + I  N++++ L D      +   + +    P R+ +  +E+  +
Sbjct: 632 ARKLAS-----TDPSVCIAANLSARSLEDATFPAFLDDTLRQLEVDPRRLHIEVTETSAI 686

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            +P  +R ++  LR +G ++ LDDFG+  S  ++L  +  + +K +G+ +          
Sbjct: 687 SDPAAARRMIDALRGLGCAVYLDDFGSGFSSFAHLKLLDVEAIKIDGAFIRDLHGDSTNR 746

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             + S+I +A +++   +A+ +     +  L  +G D +Q  H+  P
Sbjct: 747 LFVASMIEIAHHLKKLAVAEHVEDASTLDILRSLGVDLVQGFHLGHP 793


>gi|52841348|ref|YP_095147.1| sensory box protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628459|gb|AAU27200.1| sensory box protein (GGDEF domain/EAL domain) [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 789

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 230/554 (41%), Gaps = 16/554 (2%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  + + +   D     +        + G     + G           N  + F   L  
Sbjct: 119 ISSAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAIFQSRKQN--EKFYKELWK 176

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  + G+   E   +  + +     + I  + NS GD++ YIG  +D+T  KK  + I 
Sbjct: 177 ILAEK-GQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYIGYYHDLTLIKKQEQQIE 235

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA--VG 588
              + D LTG+PN+     RL  ++   +  +N    V  I +      N +L     + 
Sbjct: 236 NFKYYDYLTGLPNKFLLTQRLQMLISGLSE-ENKELIVFNIRVFDSNSKNSLLDFPPNIR 294

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +++ +  RI          +R+    F +I   ++    +A  A  M + +A P  + 
Sbjct: 295 DKIILEVVNRIDRTSPKKMFYSRIGLGEFIVIYFIKSRIEVMASIAQRMIEKLACPYYID 354

Query: 649 EREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS---DR 704
            + I +   IG  ++  +   ++ ++L+ +E+A + A+  G N  E F            
Sbjct: 355 HQTIILQTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQINGVNIFEFFDPQVEERIIEFN 414

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+  +  A++ +EL + Y PI+ L   ++VGLEAL++W HP+ G +   +F+      
Sbjct: 415 KRIES-VSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNH 473

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LY 823
            +   I  ++L ++   +           I I +N+++  L      + +   +++    
Sbjct: 474 PLSLQIGDWVLHQVLHQVEELLA--CNIKIPINVNVSAYQLQHPNFVKKLFDTLARYPNV 531

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L   E+  + +      ++   +  GI+ +LDDFGT  + L++L  +    VK 
Sbjct: 532 PHRLLVLEILETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLTFLKELSTSEVKI 591

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +       K +AIL+ II   K I  T+IA+ +      K L  +GC  IQ   +A
Sbjct: 592 DRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYAIA 651

Query: 942 SPLGFNSILKLLKE 955
            P+    ++  +K 
Sbjct: 652 KPIPPAKLIIWIKN 665


>gi|315182364|gb|ADT89277.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 589

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQ---KKSLEGILCNAF----- 534
           +R+   +   ++I      + + +  I  +  +A  I      K   E            
Sbjct: 99  LRSKSGEVLGILISTFTTAVHDEDPVIEYHRILARIIVHSLRNKWLSERSESLVNQLSYE 158

Query: 535 --QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              DNLT + NR    D+L  +++ S+       T+  +DID +K IND+ G  +GD ++
Sbjct: 159 VSHDNLTNLMNRNYLSDKLERLVETSSE----PFTLAYLDIDNFKSINDLYGHYIGDQII 214

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   I + ++  ++  R++G+ F  I  S            A+   +          I
Sbjct: 215 KFVANSILQCVREENLTFRIAGDEFAFITFS----NDPLKICRAILDKLDQGYFDPSHRI 270

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM------ 706
            V  SIG A  +   IT+ +++ NA LA+   K    + +  +                 
Sbjct: 271 KVGLSIGIAKKSHEPITADQLILNASLALKDCKQSRSSQIRCYDTHLSSQYHRRTQVIDA 330

Query: 707 IKEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           ++ +L    + +SE+Y+V  PI+    +E    E L +W+    G +S  EF+  AE+  
Sbjct: 331 LRSELDKTTMADSEIYVVVQPIVHRRQKEWHYFEVLARWNSASLGFVSPMEFIDAAEQSG 390

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYS 824
           +I  +   ++E   +       Q     + + +N ++ +L ++      +   +++  + 
Sbjct: 391 LIIELGEKIVELACQAKADLERQFGY-KVKLGLNCSAHELTNSTRYLTHLMQTLNQYGFE 449

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P    +  +E+V++      + +L +LR++G ++ LDDFGT  S L+Y+   P D +K +
Sbjct: 450 PREFTIELTETVLLSQTTEVKYILDKLRELGFTVALDDFGTGYSSLNYIHSYPIDCIKID 509

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +      E    ++  II +AK +   +IA+ +  +  + +L  MGCD IQ    A 
Sbjct: 510 ATFIRNMLCNETAERVVWLIIQLAKQLNVDLIAEGVESQEALDKLYAMGCDQIQGYFFAK 569

Query: 943 P-LGFNSILKLLKERFP 958
           P      + + L  + P
Sbjct: 570 PETPVKIVQQWLALQQP 586


>gi|167579818|ref|ZP_02372692.1| EAL/GGDEF domain protein [Burkholderia thailandensis TXDOH]
          Length = 737

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/607 (19%), Positives = 226/607 (37%), Gaps = 46/607 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + +  L  G     +     R   A++  GD V             P    ++G+ + 
Sbjct: 137 FRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLIGMLAD 196

Query: 444 SMHGPI--------RNWLPYIHINDR---------DNFRTILDSFVGYRRGRLQYEFRVR 486
              G          R        +D                 D+ +G        +  + 
Sbjct: 197 DCRGRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLY 256

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIG-----IANDITEQKKSLEGILCNAFQDNLTGI 541
            AD     +      ++  +G   R  G     +   +  +   +  +      D LTG+
Sbjct: 257 RADGGAIAVRATASSIAPPSGHARRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGL 316

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F  R+   L  +         ++ ID+D ++ +ND  G A GD +L +L  R+  
Sbjct: 317 PNRAEFERRVDFALAANVRGP---VALLFIDLDCFRIVNDTCGYAAGDAMLAALAARLVA 373

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGF 660
                D++ARL G+ F ++L    +    A  A  +R S+         +  +VTAS+G 
Sbjct: 374 CAASTDVVARLGGDEFCVLL-DAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGV 432

Query: 661 AS--WTSSKITSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLA 714
           A            + ++ A +A   AK RG N V+         +   + V     +  A
Sbjct: 433 ALLGAPDRVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQA 492

Query: 715 VENSELYLVYHPIIRLMDE------EIVGLEALIQW--DHPKWGNISSSEFMLIAEELCM 766
           +E  +  L   PI+    +           E L++      + G      F+  AE   +
Sbjct: 493 LECDDFCLYVQPIVDTATQGASRPPRARRGELLLRMGALGEREGVAPPGHFIRAAERYGL 552

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I+ +++  +   +   R +         IN++   + D    + +    ++T  +P+
Sbjct: 553 VTDIDRWVVRTVFDALARARSRRFSE---YAINLSGISIGDERFLDYVLEQFARTRVAPA 609

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I    +E+  + N   +   +  L+ +G    LDDFG+  + LSYL  +P + +K +GS
Sbjct: 610 LICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGS 669

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +TG      +  I+ SI  +   +    IA+ +     +++L  +G DY Q  ++  P+
Sbjct: 670 FVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPV 729

Query: 945 GFNSILK 951
            +    +
Sbjct: 730 PWREAAR 736


>gi|310779989|ref|YP_003968321.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
 gi|309749312|gb|ADO83973.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ilyobacter polytropus DSM 2926]
          Length = 917

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/556 (17%), Positives = 225/556 (40%), Gaps = 17/556 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFR 465
            + +    + V   D  R+ +        + G +             Y   H        
Sbjct: 367 KMILGHVEEAVLITDHKRNILDLNKGFTKMTGYSREEALNLNTKIFSYDKSHP----KLY 422

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-RYIGIANDITEQKK 524
             +   +   R   + E  +R  D   +  ++ I  + N        Y+ +  D++ +K+
Sbjct: 423 MKIKEQLEKGRD-WKGELWLRKKDGSKYPALLTINNIINPKNKKTDYYVSVIKDLSREKE 481

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               I      ++ T +PN   F   +   +            V+ + + K   +     
Sbjct: 482 KEAEIEYLLTHNSKTNLPNEFMFYSFIDEEIKKENE-----FGVLYVKLKKIDDLEMKYN 536

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                 +   +  ++  L      +A +S + F +I     +   I      +   +   
Sbjct: 537 EEYLSIIYEEVIAKLRGLAGDDGNIAHISKDVFIVIFKFSEDKYFINRSLTELSSRLKST 596

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           I + +++I +    G   +     +  E+L+ A  ++   K+        ++ S  +  +
Sbjct: 597 IKIRDKDINIEFDFGAVFFPEHGNSPKELLRKAMFSVKALKYYPDRSFLIYQNSLEKKIQ 656

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +  +E L LA++N+EL + + P +    + ++G EAL++W+    G++S +EF+ IAE
Sbjct: 657 RELDIEEHLPLAIKNNELEVYFQPQVNSEKDMLIGAEALLRWNSKSLGSVSPAEFIPIAE 716

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            + +I  + +++++ +AR    +        I I IN+++ D  +  L E +  ++    
Sbjct: 717 SIGVINKLGMWVVKEVARQ-TKFLGLDKHKDIKISINLSATDFKNEFLVEEITYILEIYG 775

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S+ ++  +E V++ + +  +  L   +  GIS+ +DDFGT  S +++L  + FD +K
Sbjct: 776 LDFSQFEIELTEGVLVDDYDYVKPKLDEFQMNGISVAIDDFGTGFSSMTHLKKLNFDKIK 835

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +    +    +I   I  +AK ++  +IA+    +  ++ L  +GC  IQ  + +
Sbjct: 836 IDRTFIKDYPKSDSGSIAEIITYLAKRLDINVIAEGAETKEQVEFLRGIGCSNIQGYYYS 895

Query: 942 SPLGFNSILKLLKERF 957
            PL  +   + +   F
Sbjct: 896 KPLSASDFKEYIDTYF 911


>gi|296136992|ref|YP_003644234.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295797114|gb|ADG31904.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 931

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 207/441 (46%), Gaps = 15/441 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LT + NR    +RL   L+ +         +++      K++ND  G 
Sbjct: 366 QQRLRTLAITDPLTAVGNRALLRERLQVALETAWRRQGEFGLLLLDLDGF-KQVNDAYGH 424

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAM 643
           + GD +L    +R+  +L+  +++AR+ G+ F ++L     +  +     A  +  ++  
Sbjct: 425 SAGDALLRETAQRLQTILREGEVMARMGGDEFAVLLTEGLGSGEIAAEAAAQRILSALRQ 484

Query: 644 PINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           P +L   R+ +++ S+G A +      +  +L+ A+LA+Y AK  G +    F+    R 
Sbjct: 485 PFDLGVGRQASISVSLGCALYPQDGGDAETLLRRADLALYAAKAAGRDRYLRFKPDFERE 544

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +    + E +  A++   L L Y PI+          +VG+EAL++    + G + +++
Sbjct: 545 AQRQKNLLESVEAALQQGRLSLNYQPIVAIGGDPARPAVVGVEALLRLQTEQGGQMVAAD 604

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F  + +   + +AI  F+L++     + WR +     + I +NI+++ LL  E  + +  
Sbjct: 605 FASVLDHGRLARAIGRFVLDQALTQGVQWRAEGLE--LHIAVNISAEHLLAPEFLDDLHQ 662

Query: 817 LISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +     +  S + L  +ES  + N E++R +L   + +G+S+ LDDFGT  + L+YL  
Sbjct: 663 ALHNHPGFPASGLMLEVTESAPLRNLEQARQILQSCQDLGLSVALDDFGTGAASLTYLQQ 722

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P  ++K + S +       K  AI+ +++  A  +   +I +       +  L  M C 
Sbjct: 723 LPAQSIKIDQSFVRDMVNDPKDFAIVSAVVTAANLLGLEVIGEGAETLEHLSVLAAMNCT 782

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q   +A PL  +++   ++
Sbjct: 783 LAQGYAIARPLPADAVATWVQ 803


>gi|297584933|ref|YP_003700713.1| extracellular sensor-containing diguanylate
           cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297143390|gb|ADI00148.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus selenitireducens MLS10]
          Length = 923

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/589 (20%), Positives = 239/589 (40%), Gaps = 46/589 (7%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLA----------VLGSGDIVWDWDIVRDRVTTT 431
           +G  + Q ++     ++ +  + E   L           +  +    +  D+    +   
Sbjct: 360 MGKRIRQDLIEANEQNERLLDEVESHKLTQNQLKLMLSVLARTDQAFFIMDVKYTVIYHN 419

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA--- 488
             +  I+                  H  D       LD            E  +      
Sbjct: 420 ETMDQIM----------------IKHTIDIPALVEKLDVSSDSLASMYDEES-INHELVL 462

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D+  + + ++      +    L  +G   D ++  ++   I      D  TG+ N+Q+FL
Sbjct: 463 DDHHYDIGLQAFYYEGT----LYILGTVEDKSQIIEAYSMIAHLRTYDAFTGLMNKQAFL 518

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           D +   +            +++ +I+ ++ I +  G+   ++++ SL  R+ E L+  + 
Sbjct: 519 DHVEKEITRVPLKG---ACMVLCNINGFRTIQEAKGLEFANNLIFSLRDRLQESLQEGEA 575

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R +   F + L+       I +    +         +   +  +  + G + ++  + 
Sbjct: 576 IGRTNV-EFAMFLL-IEEGESIEERLETITARAMESYEIDGEDTFLNLAFGASVYSDKQD 633

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVMIKEDLCLAVENSELYLVYH 725
           TSS++L  A  A+ H K      V +F     +   + + MI   L  AVE  E  L   
Sbjct: 634 TSSQLLDQANAALNHNKDPNEQAVFTFYDERINQMTAYQFMIFNRLQTAVEREEFELHMQ 693

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P I      IVG+EAL++W H     +    F+ IAE+  ++  I  ++LE   R   S+
Sbjct: 694 PQINAESGRIVGMEALLRWHHED-SYVRPDVFIPIAEKYGIMIKIGDWVLEESMRIAASF 752

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             + +  P  I +NI+     D  +   +   + +T + P+ +KL  +ES+++ + ER  
Sbjct: 753 AKRGHTVP--ISVNISGSQFRDPAILSKLDTYLHQTKFDPALLKLELTESILIDDEERCM 810

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIP 904
            +L ++R  GI +++DDFGT  S LSYL  +  + +K + S + G   E    I   II 
Sbjct: 811 DVLDKIRNRGIRVSIDDFGTGYSSLSYLKRLNVNELKIDRSFIKGIPKEDNGDITELIIS 870

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A  ++ +++A+ +  +  I  L   GC  IQ  +   P+  + I  LL
Sbjct: 871 LANKLKLSLVAEGVEEKEQIDFLVSHGCKTIQGYYYYKPMPVSDIEDLL 919


>gi|222102895|ref|YP_002539934.1| hypothetical protein Avi_7641 [Agrobacterium vitis S4]
 gi|221739496|gb|ACM40229.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 655

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 206/436 (47%), Gaps = 11/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                 L  A  D+LT +PNR++F   L   L  ++T  + R  + +ID+D +K IND+ 
Sbjct: 212 ALSNENLRLAHVDSLTELPNRRAFFSYLEFELTKASTVGS-RVALGLIDLDGFKPINDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + GD +LV + +R+ + L     + RL G+ F +I  +  +  +    A A+ + +  
Sbjct: 271 GHSTGDRLLVEVGKRLLD-LPEGHKIFRLGGDEFAVIATNSLDDEQFLSAANALIERLHH 329

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFR 701
           P ++ E  + ++AS+G A +    +T   +L  A+ A+YHAK   RG   + +       
Sbjct: 330 PFHMAEATVQISASMGIAIYPDLTLTPDRLLDQADYALYHAKNTRRGSAVLFNACHERQI 389

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +    I++ L  A  + E+ +VY PII +   + VG EAL +W+ P  G +S +EF  IA
Sbjct: 390 NINASIEQTLKQADISHEMSVVYQPIIDIRQGKPVGFEALARWESPTLGCVSPAEFFPIA 449

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   ++  +   +L +       W        + +  N+++ DL  +E    +  +I   
Sbjct: 450 ERAGIVGLLTRPLLRKALDAASQW-----DRDLRLSFNLSAYDLNLSESATLLIDIIENG 504

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +   RI    +E+    +  + +  +  LR  G  ++LDDFG   S L+ L  +P   +
Sbjct: 505 KFDAGRIDFEITETAFTHDFTQVKRSIEMLRSRGCGISLDDFGIGYSSLTRLHSLPLTKI 564

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G         I++S++ +++++    + + I    ++  L ++G   +Q   
Sbjct: 565 KIDRSFVVGLDKTPASYKIVKSVLALSQDMGLECVVEGIETHDELAALQKLGGILVQGYI 624

Query: 940 VASPLGFNSILKLLKE 955
            + PL  + + + +  
Sbjct: 625 CSPPLRESDVAEFIAR 640


>gi|229916897|ref|YP_002885543.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Exiguobacterium sp. AT1b]
 gi|229468326|gb|ACQ70098.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Exiguobacterium sp. AT1b]
          Length = 615

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 188/455 (41%), Gaps = 10/455 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I I     +++     I   A+ D LTG+     F++ +                +M +
Sbjct: 168 FIAILYFRLDRQAVDTHIRRLAYTDELTGLLKDVGFIETVD---AERQRQSQQLGAMMYL 224

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            +D ++ + D +GI   D+++     R+   +     L+RLS + F I L    + +K+ 
Sbjct: 225 KVDDFRSVEDAIGIEKSDEIVREAANRLRRYVDES-KLSRLSQSGFAIWLPY-GDRIKLN 282

Query: 632 DFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A  + +++   P  + E E+ +T S   A       T   + +    A      R   
Sbjct: 283 TIADKLCEALVRDPFIVDELEVILTVSAFIAVEQEDLTTLQMIHRTRIAASERGLQRAAI 342

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                 + +  ++R++++ +L   +  +E  L Y P I  +   + G E L++W+HP+ G
Sbjct: 343 VFYEEEMGTKAANRLILEMNLRSGLAGNEFLLYYQPKIDALTGSLKGFEGLMRWNHPERG 402

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   +F+ +AE   +I  +  +      R +  W ++       + +N++++  L   +
Sbjct: 403 LVPPLDFIPLAESTGVIIDLEEWAFVTACRQLKRWHERG--ERYELALNLSARHFLSEGV 460

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E    +  +     S + L  +ESV M N +         R+ G S+++DDFGT  S  
Sbjct: 461 VEKFAQIAREEGVCTSYLTLEITESVGMENQQHVIDRFVAFREEGFSISIDDFGTGFSAF 520

Query: 871 SYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL + P   +K +   +    +      I+ SI+ +A+ +    + + +        L 
Sbjct: 521 VYLKHYPIHEIKIDRQFIQVTENDPTGNVIVESIVDLARGLNLKTVCEGVETLEQWNALR 580

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +GCD +Q  + + PL    +   + +     ++ 
Sbjct: 581 ELGCDEMQGYYFSRPLPLEELETWIADYTTQTRDA 615


>gi|126653451|ref|ZP_01725547.1| hypothetical protein BB14905_19310 [Bacillus sp. B14905]
 gi|126589807|gb|EAZ83940.1| hypothetical protein BB14905_19310 [Bacillus sp. B14905]
          Length = 718

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/436 (23%), Positives = 204/436 (46%), Gaps = 13/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   I   A+ D  TG+PNR SF++ L   ++           + ++   ++ ++ ++ 
Sbjct: 292 RTQRKIWDLAYTDITTGLPNRHSFVNFLEKEVER-----GQNGYIKIVKPSEFHQVVELY 346

Query: 584 GIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G   GD++L  L +R+  +     + +AR + +   +IL +      + ++   ++++I 
Sbjct: 347 GREFGDELLRQLAKRLEQDKPADREYIARFTSS--SLILSTMTFDENLNNYEWRIKETIR 404

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  ++I +T   G AS+    I  ++ ++ A+ A+  A  + G H E F       
Sbjct: 405 QPFIIGGKQIYITLKTGIASFNDD-IKINDAIRFADNALSFATDKPGTHTEIFTTEKNDV 463

Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +     L  A++N E+ +   P + L + EI  +EAL +W  PK G +S + F+ +
Sbjct: 464 LVQRMTVLNHLSQAIKNKEITVHLQPKVDLRNGEIQSIEALARWISPKLGFVSPAIFIPV 523

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    ++ I++ +LE +   +   R +     + I +NI+          +    L+ +
Sbjct: 524 AESAGKVREIDVLVLETVLSWLAE-RQKLGKKLVKIAVNISPDHFYYTHFVQDTLKLVRQ 582

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               PS I L  +E++ + + + +  ++  L+  G   ++DDFGT  S LSYL  +PF  
Sbjct: 583 YGIDPSNIILEVTENIGLVDFQSAYKIIQELKSYGFKTSVDDFGTGFSSLSYLQQLPFTE 642

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +        +AI+RSII +A N+    +A+ I  E  ++ L  +GC   Q   
Sbjct: 643 LKIDRSFINALEDPATLAIVRSIIQLALNLGMISVAEGIETEEQVEILRALGCTVGQGFF 702

Query: 940 VASPLGFNSILKLLKE 955
              P+    +  +L +
Sbjct: 703 YFKPMAIEELDLILDQ 718


>gi|162447980|ref|YP_001621112.1| putative signal transduction protein [Acholeplasma laidlawii PG-8A]
 gi|161986087|gb|ABX81736.1| predicted signal transduction protein [Acholeplasma laidlawii
           PG-8A]
          Length = 536

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 97/433 (22%), Positives = 200/433 (46%), Gaps = 12/433 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E     A+ D LTG+ NR     ++  ++      +     ++ +DID +  IN++ G
Sbjct: 109 LEEKHFNLAYFDALTGLINRNRLEIKVNRLI-----QNRTPFALLYLDIDDFGAINELKG 163

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD+ L+ + + + ++ K   I+AR+S + F ++     +  +I   A      +   
Sbjct: 164 HKWGDEALLLIAKELTKVGKEH-IVARMSEDSFVLVFYQFEHLDEIKTLADLSINKVKNL 222

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ++        +AS G A +    +   ++L+ A LA+  AK  G + V  +      S  
Sbjct: 223 MSKQSEAYFYSASAGVAIYPDHGLVYGDILRYANLALSAAKKNGKDQVVIYNTFMHESKE 282

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I   +  +++N+E Y+VY PI+     EI  LEAL++W+HP  G I  + F+ ++E
Sbjct: 283 REYEITNAIKPSLQNNEFYVVYQPILDFKSGEIRKLEALLRWNHPSMGYIPPNNFIYLSE 342

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  F+ +++   I +W +        + INI+ K L+     E + + I K  
Sbjct: 343 ISGSILELTHFLYDKVFGQIKTWNEMGKH--FTVDINISPKVLMHPTFIEDIGSYIKKHE 400

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++ +  +ES+ + N +++ ++L +L++ G  + LDDFG+  S L+Y  ++P D +K
Sbjct: 401 IDHKQVIIEITESMALENIDQTIIVLKQLKEKGFLVALDDFGSGYSSLTYFKHLPVDIIK 460

Query: 883 FNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +            L+ ++ ++  +   I+ + +     I  L     DY+Q  + 
Sbjct: 461 MDKDFIAKIDKSPTERHFLKFVLDLSHAMSKKIVLEGVETIEQIDILKLHDVDYVQGFYY 520

Query: 941 ASPLGFNSILKLL 953
             PL  + + +++
Sbjct: 521 YKPLEVSQLNEII 533


>gi|288870527|ref|ZP_06114404.2| putative sensory box/GGDEF domain/EAL domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288866844|gb|EFC99142.1| putative sensory box/GGDEF domain/EAL domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 840

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/513 (20%), Positives = 205/513 (39%), Gaps = 28/513 (5%)

Query: 458 INDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             DR+ F    +       +      ++ EFR      ++ W+      +     D    
Sbjct: 178 PEDRERFLEFWNFDTLAQRLSGNNHTIRGEFRKLLVSGEYCWVAQTAIQLHTGEQDKTVI 237

Query: 513 IGIANDITEQKK-----SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +    DI +QKK     +  G      +D++ G+     FL+R    L         + +
Sbjct: 238 MVFIQDIDKQKKQEIAAANSGKSGLEEKDSMMGLYRYGPFLERAEQFL---REKSGSKFS 294

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENN 626
           ++ IDI+ +K  N+  G   GD  L S+  ++ E+ K  D +A  + G+ F II+  E  
Sbjct: 295 MVAIDIEHFKLFNEWYGEEAGDRFLTSIAEQLKEVEKQYDSMAGYMGGDDFAIIIPRE-- 352

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                     + + I   +      +    + G        ++ S M   A +A+   K 
Sbjct: 353 ----ESVLRNLERGIRHFVKQYGGSVGFLPAFGVYEIEEWDVSVSMMYDRASIALASVKG 408

Query: 687 R--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                       +     D  ++  ++  A++N E      P   ++  +I+GLE+L++W
Sbjct: 409 NYLNRMGRYDAGMKKKMEDDQLLLSEVQRALDNHEFIFYAQPQCNMLTGKIIGLESLVRW 468

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G +   EF+ + E    I  ++L++ + +   +  W       P+ I +N++  D
Sbjct: 469 KHPVRGVVQPGEFIPLLERNGFITNLDLYVWDMVCARLHDWIAA-GHKPVPIAVNVSRID 527

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +    +      L  +   +P+ + +  +ES    +    R ++  LRK G ++ +DDFG
Sbjct: 528 IYSMNVTNTFVELTGRYGIAPALLAIEITESAYAEDYNLIRQVVIDLRKAGFTVFMDDFG 587

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAKDIYG 920
           +  S L+ L  +  D +K +   +    E        IL +I+ MA+  +  +IA+ +  
Sbjct: 588 SGYSSLNMLKDVNVDVIKIDTKFL-DMNEHSQNRGMGILETIVRMARLTQLRVIAEGVEK 646

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +  L  +GC Y Q  +   P+       LL
Sbjct: 647 KEHVDFLRNVGCIYGQGYYYYRPMPIEQFEPLL 679



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 417 IVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
            +  +D+  D++           + G     +    ++ L  IH  DRD    + ++   
Sbjct: 720 GMALYDVCGDKIELLQVNEGYYRVTGCNPVDLEERRKSILAQIHEEDRDKVFDLFETAYK 779

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                     R    + +  W+ +RI  +   +   L Y G  +D+TE K+  E 
Sbjct: 780 NPLKGADGTIRRYRLNGELMWISLRIFFLKERDEHRLFY-GSVSDVTEGKRREEK 833


>gi|261252869|ref|ZP_05945442.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260936260|gb|EEX92249.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 905

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/584 (18%), Positives = 245/584 (41%), Gaps = 20/584 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +     ++Q + +    ++ +  D +++  A+  S  I       R+ V        +LG
Sbjct: 329 LDRLVKLVQALASDSSTTKEMLQDTQQKFEALYESQTIAMVLVRGREIVDINKTALGLLG 388

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIR 498
                +     + L      D       +D+     ++G+ Q+E ++   + +     I 
Sbjct: 389 YERDELIHQPLDLLC----EDSQQPECQIDAMYRMFQQGQTQFEAQMLTKEGENIDCQIE 444

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +R +    G++   + I  D+   K+ ++ I   A +D+L+G+ NR++ +++   ++   
Sbjct: 445 VRSIR-YQGNVAMMLSI-RDVRVHKQQVKLIEDLAERDHLSGLWNRKAIMEKARGLV--- 499

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                 +  ++ I I    ++++V G  + D  L S+   +         + R+S + F 
Sbjct: 500 -QSQPNQFALIYISIPNLMQVSEVYGHQIFDQSLESIA-CLFGTELSLFPVGRISSHEFL 557

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++  E++       A+  +++++    +    + +   I       +  +   ++ ++ 
Sbjct: 558 VLIEHESDCQIAEQGAVQFKEALSRKRQIQTLMLDLKCQIALIEPEITHHSLDMLIHSSI 617

Query: 679 LAMYHAKHRGGN---HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            A+   ++                       IK DL  A+E+ E++  Y PI+     EI
Sbjct: 618 HALEVTRNSAAPAELTRVGCSTLELAQAAAAIKRDLESAIESKEIHAHYQPIVDSKTAEI 677

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR---DIISWRDQANMP 792
           VG EAL +W HP++G +S + F+ +AE    I  +   +LE+       +   R      
Sbjct: 678 VGFEALARWQHPQFGFVSPAVFIPLAERDHQIIKLGESILEQACEFMTQVDKIRRSQGKT 737

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + I +N+++       L + +  +I +    P ++ +  +ES++MG  +     +  ++
Sbjct: 738 SLTIHVNLSAAHFYYPGLPDYLVHIIQRYNVLPGQLVIEVTESMLMGIEDEVIARMELIK 797

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
            +G+   LDDFGT  S  S L   P D VK + S +        A  ++R+I  MA+ + 
Sbjct: 798 SLGVLFALDDFGTGYSSFSTLCCFPLDIVKLDKSYIDQLEVNDRAKSLVRNIANMAQELG 857

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            T +A+ +      ++L     + IQ  +   P+    ++KL+ 
Sbjct: 858 LTTVAEGVETASQARKLKNWNIEEIQGFYFYKPMPEGELIKLIT 901


>gi|71278687|ref|YP_267152.1| response regulator/GGDEF/EAL domain-containing protein [Colwellia
           psychrerythraea 34H]
 gi|71144427|gb|AAZ24900.1| response regulator/GGDEF/EAL domain protein [Colwellia
           psychrerythraea 34H]
          Length = 740

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 207/439 (47%), Gaps = 16/439 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E     + +   A++D LT +PNR  F+  L +     A +D       +IDI+ +  IN
Sbjct: 314 ENVHLFQKLTNAAYRDWLTNLPNRLEFVRLLDSF----AQNDCKNTVAALIDINHFSDIN 369

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG  +G+ +L ++ +RI   +     LAR+  + FGII  ++  + +      ++   
Sbjct: 370 DALGQDIGNKLLSAVGQRIQS-IGSDCQLARVGADVFGIIGPADCLTPE------SLIAL 422

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VS 698
              P    E+ + + A  G  +   ++ +  ++L    +A+  AK     H   +   + 
Sbjct: 423 FHQPFAAGEQHLPINACFGLCTKEHAQSSGVQVLNQINIALNIAKKNRLEHFAYYHSDIE 482

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ +   L     N+ L L Y P + L   +++G EAL++W       +S + F+
Sbjct: 483 DQMQWRLNMIRQLRNDFGNNCLELWYQPQLSLTTGKVIGAEALLRWRTADGKFVSPAVFI 542

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  I  +++ +  + +    +      + I +N++      +   + +   +
Sbjct: 543 PLAEYSGLIIEIGDWVISQACKQLKVLEENF--SDLSISVNVSIPQFRQDNFVDNIINTM 600

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    P++++L  +E+++M  P+     L +L+  GIS+ LDDFGT  S LSYL  +P 
Sbjct: 601 TQYGIKPNKLELEITENILMDEPQIIIDALTKLKAQGISIALDDFGTGFSSLSYLQKLPL 660

Query: 879 DTVKFNGSLMTGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           + +K + + +T   ++  +++  +II + K ++  +IA+ I      + L  +GCD +Q 
Sbjct: 661 NRLKVDRAFVTDINKEGQSVIAETIINLGKKMQLKVIAEGIEEIEQQERLIELGCDEVQG 720

Query: 938 SHVASPLGFNSILKLLKER 956
            + A P+  +  +  L ++
Sbjct: 721 FYYAKPMPADEFINFLHQQ 739


>gi|291549759|emb|CBL26021.1| diguanylate cyclase (GGDEF) domain [Ruminococcus torques L2-14]
          Length = 1128

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 225/550 (40%), Gaps = 25/550 (4%)

Query: 411  VLGSGDI-VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S D  ++  D   D    +P       L     H   +    +++  D    +  LD
Sbjct: 590  LSPSTDGFLYMLDFRTDFFYISPQALDRFCLPGNEFHNMTKELKEFVYKKDYPLLKAELD 649

Query: 470  SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
            + +   R     ++R    D +  W+  R   + +   + +  IG  N+I  ++K+    
Sbjct: 650  NLLNTDRNTHNMDYRWLDLDREPVWINCRGYIIRDDQQEPIYLIGCINEIGNRQKA---- 705

Query: 530  LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                  DN+TG+    S        +         +  ++ + ID +K IN+  G   GD
Sbjct: 706  ------DNITGLLGETSLEKYFKDSVSTLN-----KGFLIHVGIDGFKMINENYGWDYGD 754

Query: 590  DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             VL      I   +     + +++ + F I+  + ++    ++    + K I   I    
Sbjct: 755  YVLRETASCILSCISDSQKVYKIASDEFIILDTTSSDMTTASNLYDHICKHINQFIEENN 814

Query: 650  REITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVM 706
                 T S G       S+   +E++K  + ++  AK  G N    F+   +++      
Sbjct: 815  FAAVFTISAGILPLPDLSQTGYAELIKRTDFSLTMAKQHGRNCCYIFQEEEYQNFLRIRE 874

Query: 707  IKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            I  +L  AV +      +++ P++ +  +++ G E LI++   K+G IS +EF+ + E  
Sbjct: 875  ITNELHSAVNHGFRGFSIIFQPVMDIRQDKLTGAEVLIRFTSKKFGPISPAEFIPLLETS 934

Query: 765  CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             +I     + +          R Q   P   + IN++   +  +++   + + ++ +   
Sbjct: 935  GLIIPTGRWFMREAITACRKIRMQI--PDFKVNINVSQVQITKSDVITDLISEMNASGLP 992

Query: 825  PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            P+ I +  +ES+++   E+++  L  L++ G+ L LDDFGT  S   YL  +  D VK +
Sbjct: 993  PAAIAIELTESILLEKNEKAQNFLKELKQAGLQLALDDFGTGYSNFHYLSELHPDIVKID 1052

Query: 885  GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
                +   + +K+  +L     M  N+   +  + I  E +++++  +  DY Q  +   
Sbjct: 1053 RGFTSKAITDKKKYYLLNQFSNMIHNLGLKLCIEGIETEDELQKIKLLKPDYCQGFYWGR 1112

Query: 943  PLGFNSILKL 952
            P  ++   K 
Sbjct: 1113 PCSYDEFRKY 1122



 Score =  104 bits (259), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +    D   QK+ L  +   A  D LT   NR ++  ++  +      D      +++ D
Sbjct: 366 VSRFYDHYLQKQKLVYLQKLADTDLLTDTMNRNAYEKKVNRL--NVQKDKLHTTGLILFD 423

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D  K IND  G   GD+ L   ++ I +     + L R+ G+ F         +     
Sbjct: 424 LDNLKIINDRFGHEKGDEALQLCSQCIKQFFPDKENLFRIGGDEFAYFYNKNKENNIGDK 483

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGG 689
            A   +   +           ++ S G+A +      T  ++ K ++L +Y  K +  
Sbjct: 484 IAQLNQTLESTEHTFN---YPLSISSGYACFLPEMDNTFKDLAKRSDLMLYRIKRKRK 538


>gi|172058674|ref|YP_001815134.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
 gi|171991195|gb|ACB62117.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sibiricum 255-15]
          Length = 834

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/603 (21%), Positives = 264/603 (43%), Gaps = 41/603 (6%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           +I+ + G                  S  E+ + ++   G   ++++  RDR+T +   A+
Sbjct: 121 VIIGVYGIARDITQHIQLRLQHTRLSAKEQLTASLP--GLAFFEYETTRDRLTLSAHFAS 178

Query: 437 ILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHW 494
           +L ++   +       +L  IH +DR  F+  L + +           R+ +  D   + 
Sbjct: 179 LLDISQHRLASLEYDEFLLEIHPDDRSRFKQQL-TLLQPGEPTASCTLRMNQTRD---YT 234

Query: 495 MIIRIRPMSNSNGD------ILRYIGIANDITEQKK--------SLEGILCNAFQDNLTG 540
             +  + + + +G       + + +  A D T+ K+          E I   +  D +TG
Sbjct: 235 QEVICQGLRSEDGSEELFSFLFQAVTKATDETDTKRVSDRTILDQEEDIRKLSLYDQVTG 294

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  FL+ +  ++       +   T++ +D ++  +IN+ +G  +GD  L   +R + 
Sbjct: 295 LPNRTLFLEEVEHLIRT-----DHPFTILSLDFNQLHRINEQIGYDIGDQWLRQTSRYLT 349

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           E L      ARL+G+ + ++     + + +    + +       I +   E+    +IG 
Sbjct: 350 ETL-PDLYCARLTGDHYAVLSTQPFDEVALKAMCLDLLALNTTRIQIEGYELVAELAIGL 408

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENS 718
           + +   ++ ++E+L  A  A+  AK +     E +             +++ L  A++  
Sbjct: 409 SPFQHDEMAATELLHTASRALSRAKLKAQPAYEFYTSQLDLEIYRRHQLEQSLRNAIQQD 468

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL+L Y P + +   +I+  EALI+WDHP+WG I   +F+ ++EE      I  ++LE +
Sbjct: 469 ELFLEYQPKVDIWSGQILACEALIRWDHPEWGRIPPQDFIPLSEEGHCYLPIGEWVLETV 528

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R I S   Q   P + I IN++SK LL  +  + ++  + +       ++L   ESV++
Sbjct: 529 CRTIQSLLQQQ-SPVVPISINLSSKQLLHRDFVDTVRTCLHRHQVPARYLQLELQESVLL 587

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL----GYIPFDTVKFNGSLMTGSTEK 894
              E  +  L +L ++GI L LD                   P  ++K + S +    E 
Sbjct: 588 HESEFVKETLQQLHQLGIQLILD----GYGSGVSSLSSLQTYPISSLKLDRSFVARLEED 643

Query: 895 RI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                +++SI+ +AK  + +++A+ I     + +     C  +Q    + P+G +++  L
Sbjct: 644 EQPVPLIKSIVYLAKEFQLSVVAEGIETLHQLDQFRDFECHAVQGYLFSRPVGIDTLRLL 703

Query: 953 LKE 955
           LK+
Sbjct: 704 LKQ 706



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 11/172 (6%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D V+  ++    V+    ++ +LG     +     ++  +I   +      I   
Sbjct: 29  LENHPDAVYTLNLEGQIVSYNQKLSLLLGYGGKKLQHQ--HFSEFITPAEAKRIAPIKQR 86

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +         E  V   D     M +   P+   N  I+   GIA DIT+  +      
Sbjct: 87  ALSGETVHFTAE--VAHHDGHRLTMNVTNIPIY-QNHVIIGVYGIARDITQHIQLRLQHT 143

Query: 531 CNAFQDNLT-GIPNRQSFL-----DRLTTILDLSATDDNLRPTVMVIDIDKY 576
             + ++ LT  +P    F      DRLT     ++  D  +  +  ++ D++
Sbjct: 144 RLSAKEQLTASLPGLAFFEYETTRDRLTLSAHFASLLDISQHRLASLEYDEF 195


>gi|266622912|ref|ZP_06115847.1| sensory box protein/response regulator [Clostridium hathewayi DSM
           13479]
 gi|288865328|gb|EFC97626.1| sensory box protein/response regulator [Clostridium hathewayi DSM
           13479]
          Length = 574

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 202/437 (46%), Gaps = 14/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    ++     D LTG+ +++ F  R+   L     +      ++  DI  +K INDV 
Sbjct: 126 RETAAMINQFQYDRLTGLYSKEFFYQRVRETL---RQNSGQNYYLICSDIVNFKLINDVF 182

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+A GD +L  +       +    I   L  +RF  +L  ++       F   M  S   
Sbjct: 183 GVAAGDRLLCGIADMYRRYVGEGGICGHLDADRFACLLEFDD------VFTEQMFISANE 236

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            IN L+    V    G  S  +  +T  +M   A LA    K + G +  ++        
Sbjct: 237 EINRLQNAKNVAVKWGIYSVGNQNVTVEQMCDRALLAARSIKEQYGVYYAAYDDKLRDEL 296

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I + +  A++  +  +   P  R+ DE + G EAL++W HP+WG  S +EF+ + 
Sbjct: 297 LRQQAIIDSMETALKEGQFLVYLQPKYRIWDETLAGAEALVRWKHPEWGFQSPAEFIPLF 356

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  ++ F+ ++    +  W D+   PPI + +N++  D+   ++ + M   ++K 
Sbjct: 357 EKNGFITKLDQFVWDKTCFYLRKW-DEEGYPPIPVSVNVSRADIYHADIADIMMRTVTKY 415

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +PSR+ L  +ES    +P +    +  LR++G  + +DDFG+  S L+ L  +P D +
Sbjct: 416 GLTPSRLHLEITESAYTEDPGQIIETVRHLRELGFVIEMDDFGSGYSSLNMLNQMPIDIL 475

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +   T K     IL+ I+ +A+ +  +++A+ +  +  +  L+  GC+Y+Q  +
Sbjct: 476 KLDMQFVQSETAKPMDQGILQLIMELARRMHLSVVAEGVETKTQLDRLSETGCEYVQGYY 535

Query: 940 VASPLGFNSILKLLKER 956
            A P+       L++++
Sbjct: 536 FARPMPEGEFETLMRDQ 552


>gi|88704185|ref|ZP_01101899.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
 gi|88701236|gb|EAQ98341.1| sensory box/GGDEF family protein [Congregibacter litoralis KT71]
          Length = 353

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 174/345 (50%), Gaps = 4/345 (1%)

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    ++  +   A+ + K+++ PI L      VT SIG A +    + +  +++NA+
Sbjct: 1   MVLADVQHTDDVERIALRIMKTLSEPIALQTHNPVVTPSIGIAMYPQDGLDADSLVRNAD 60

Query: 679 LAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            AMY AK  G      +         + + ++EDL  A+  ++L L Y P +  +   +V
Sbjct: 61  TAMYAAKADGRACFRFYNEEMNARSVEHLKLEEDLREAMRTNQLELRYQPQVETLTGAVV 120

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            LEAL++W HP+ G IS ++F+ +AE    I  +  ++L+ +AR  + W D   +    +
Sbjct: 121 SLEALVRWKHPERGMISPADFIPVAESTGQIIELGEWVLKEVARHCVYW-DSIGLASFRV 179

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +NI+       +L   ++  +S++   P R++L  +ES +M + E + L L +L+ +G+
Sbjct: 180 CVNISPLQFNQPDLLHYVKGFLSRSGLDPQRLELELTESAIMTDGESNILKLSQLKSLGL 239

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIA 915
            L +DDFGT  S LSYL   P +T+K + S +         AI+ +II +AK +    IA
Sbjct: 240 DLAVDDFGTGYSSLSYLRRFPINTLKIDQSFVADMNSADGAAIVDAIIALAKTLNMRSIA 299

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           + I  E  +  L   G D +Q  + A PL    +   +++ +   
Sbjct: 300 EGIETEEQLAYLAERGVDLMQGFYFARPLYPEDVPNAIRQDYSET 344


>gi|117618065|ref|YP_855404.1| PAS/GGDEF domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559472|gb|ABK36420.1| PAS:GGDEF domain protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 643

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 192/431 (44%), Gaps = 12/431 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +        A  D LTG+ NR + L+++ +              ++++DI+ ++ IN   
Sbjct: 197 REARRHFRAARVDPLTGLSNRLALLEKMESY-----ATKETPFGLVLVDINDFRDINSKF 251

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  L +R+  L +  + +ARL G++F +I    ++  ++ +    +  ++  
Sbjct: 252 GYNTGDFLLQELAKRMRSLCENGEWVARLGGDQFAMIQRESSDLRQVRELVARLLHALKQ 311

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRS 702
            I +      +   IG A +      + E+L  AE A++H++       +    + +  +
Sbjct: 312 DIIIDNYPFRLEVGIGIAFFPMDSKHTQELLSRAEQALFHSRKTHVPYVIYDNSLLNETA 371

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  +  D+ +A+E++ L L Y PI+ L       +EAL++W HP+ G I  +E + +AE
Sbjct: 372 RRKHLASDMIMALEHNALELYYQPIVNLESGRCEAVEALLRWRHPELGFIPPNEVIQVAE 431

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  + + +  ++L      +  W+ Q  +  + + +NI+   +    L + +   +    
Sbjct: 432 EFQLAEKLGSWVLNTACEQLYQWQ-QLGLVDLQMCVNISPG-MYQRNLLKLVAKALMDHH 489

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + L  +E   M   + S  L+  L + G+ L LDDFGT  S LSYL  +P   VK
Sbjct: 490 IPAASLVLEVTEDTTMREVKNSLQLMQDLNQQGVQLALDDFGTGYSSLSYLQKLPVSKVK 549

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCD-YIQDS 938
            + S + G     +   ++ +I  M   +  +++ + I  +  +  L  +     Y Q  
Sbjct: 550 IDRSFIQGIDTSIEASELVANICRMGSMLGKSLVCEGIETQAQLDVLRTLTDIHLYGQGY 609

Query: 939 HVASPLGFNSI 949
             + P     +
Sbjct: 610 LFSRPEQAEKV 620


>gi|163736544|ref|ZP_02143963.1| hypothetical protein RGBS107_15471 [Phaeobacter gallaeciensis
           BS107]
 gi|161390414|gb|EDQ14764.1| hypothetical protein RGBS107_15471 [Phaeobacter gallaeciensis
           BS107]
          Length = 947

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/826 (18%), Positives = 303/826 (36%), Gaps = 72/826 (8%)

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
            +  V++  L++       +  A  +    +  R              L    + +  + 
Sbjct: 106 LEAHVSAMFLFQMAF----AATAATIVSGAVAERER----FLGYIATSLTLAGLVYPLVG 157

Query: 241 KLVNLPSGELL----IWRACSEIALSSSLIIFLFMYLHWNRWHAKV------------GY 284
             V  P+G L     I  A + +  S      L   L       +               
Sbjct: 158 HWVWNPAGWLRQIGFIDFAGATVVHSVGGWTALIAVLFLGPRLGRYGHKNRFFEENSVSL 217

Query: 285 ITFSGIACIAILFCM-----SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
           +   G+                +   V   +AR  L++     T  ++   + G+ RA L
Sbjct: 218 MALGGMLLWIGWGAFNGGSAMVFNADVAPVVARTMLSAAGAGVTCIVVGLLVNGHIRAEL 277

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDI-IQPALVGGLVLIVIL------IGFTVIQHVLA 392
           LI   +   +        +T  +   I +  AL    V  V+       +   V  H+ A
Sbjct: 278 LINGILGGLVAGTAAIHLVTGPVAFLIGVAGALTVMFVRDVLDALKIDDVVGAVPVHLAA 337

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-----ASGSMHG 447
               +  +      ++L   GS        I+   V     +AT+  L       G +  
Sbjct: 338 GVVGTLAVAVAVPYEALP-AGSRLGQLGIQILGVGVVAAWVMATMGPLLWMLNRRGLLRA 396

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVG----YRRGRLQYEFRVR----------AADNQFH 493
             R+ +  +++ + +    +LD         R GR     RV             +    
Sbjct: 397 KPRDEVRGLNLAENNQRNALLDLLEDMKRHQRSGRFSQRVRVEPSTRLGALAYRYNRVLD 456

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            +   I    ++         IA D      ++ +     A  D LTGI NR+   D L 
Sbjct: 457 RVETEIAQRIDALRRERDMRAIAEDAFDAMCEAQKESAWAARHDKLTGIGNRKYLEDFLA 516

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILAR 611
                          V+ +D+D++K+IND  G A GD VL  + RR+   ++   D   R
Sbjct: 517 A----PVQVPGEVTLVIALDLDRFKEINDTYGHAAGDAVLQVVARRLSGRMQDGRDFAFR 572

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G+ F   +   +   +  +    +  ++  P    E  +    S+GFA          
Sbjct: 573 IGGDEFTAFVQVSDGGAEAEELCQDLAFTLLEPFYYQEVRLGFGVSVGFAVMDP-GEPLK 631

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
             L+ A+LA+Y AK  G +HV ++  +     SD++ +  D   A+E +E+  ++ P I 
Sbjct: 632 STLRRADLALYEAKSSGSDHVVAYSDAIGQAHSDKMNLIRDFREALERNEITALFQPQIE 691

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
                ++G E L +W HP  G ++   F+ IAEE+     +++ +L+   +       Q 
Sbjct: 692 AKTGRLIGCEVLARWQHPHRGLLTPDVFLPIAEEMNCSADLDMAILDLALQGYWELHRQG 751

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLL 848
              P  I +N+++  L D +L   +Q+   +       +     E+V + +  +     +
Sbjct: 752 IDLPG-ISVNVSAARLADPQLIAELQS---RDDIPGGALTFELLETVFLDSISDDYAHKI 807

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMA 906
             L+ +GIS+ +DDFGT  + ++ +  +  D +K +    +       R  ++R +I MA
Sbjct: 808 AMLKDLGISIEIDDFGTGHASIAGVLALQPDRLKIDRVFASEIDRKPARQDLMRGLIDMA 867

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++    + + +    +   LT +G D +Q   +  P+ F  +L+ 
Sbjct: 868 ASVGAETVVEGVETWEEASVLTALGADVLQGYVIGRPMAFEDLLRW 913


>gi|114797194|ref|YP_760796.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114737368|gb|ABI75493.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 578

 Score =  370 bits (949), Expect = e-99,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 192/426 (45%), Gaps = 15/426 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ +     A  D LTG+ NR+ F++     + L          ++ +D+D++K +ND
Sbjct: 148 RCEAEKEARRLADTDTLTGLNNRRLFIEEADRFVQL-----GTPAWLIYVDLDRFKYLND 202

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G AVGDD L  +  RI +      ++ARL G+ FG+++ +      + +  I +  S+
Sbjct: 203 KYGHAVGDDALKVIAGRIQD-GWPGALVARLGGDEFGMLIDAARLEGSLDEELIRLHASL 261

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSF 700
             P       ++V ASIG A +     T SE L  A+ AM  AK   GG  +    +   
Sbjct: 262 CAPFPSKPGAVSVGASIGAAEFPGDAATRSEWLHAADKAMQRAKSDHGGVRLFDPTIDIA 321

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS-SSEFML 759
            + +  + E L  AV  +++  V+ P   + + ++ G E L +W+ P  G I    EF+ 
Sbjct: 322 EAKQARLTESLQAAVSENQIRPVFQPFYSVANGQLAGYEVLARWNGPDIGFIPGPGEFIP 381

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E L +I  +   + E+                + I +N++     +      + AL S
Sbjct: 382 LLERLGLIDEMFWGVAEQALLACRKMPSH-----LKIALNVSPIQFANRLFPARLAALAS 436

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     +++++  +E+ +  +   +  +L  L  +G+S+ LDDFGT  S L+ +  +P  
Sbjct: 437 RIGVQCNQLEIEITETAMFRDMTHTVSVLRDLSDMGMSIALDDFGTGYSSLTLVKELPLT 496

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +    ++     I+ + I +++ +     A+ +     ++ L  M CD  Q 
Sbjct: 497 KLKIDKSFIQSAQNSPSSDKIVSAAIGLSQALNILCCAEGVEDAATLERLRGMNCDLAQG 556

Query: 938 SHVASP 943
             +  P
Sbjct: 557 FLLGRP 562


>gi|227820492|ref|YP_002824463.1| hypothetical protein NGR_b22650 [Sinorhizobium fredii NGR234]
 gi|227339491|gb|ACP23710.1| hypothetical protein NGR_b22650 [Sinorhizobium fredii NGR234]
          Length = 699

 Score =  370 bits (949), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 207/441 (46%), Gaps = 6/441 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LTG+ NR SF   L  +      +     +++++D+D++K IND LG 
Sbjct: 245 EKRLTLLAHTDALTGLNNRSSFNFALGNLFGELERN-GAGFSMLLVDLDRFKNINDGLGH 303

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD VL  + R +   L+  D++ARL G+ F ++L    ++  +   A    ++IA  I
Sbjct: 304 PAGDAVLRHVARALQRTLRASDVIARLGGDEFAVLLPGIRDAAALESIAERAIEAIAADI 363

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDR 704
               R + V+ASIG A         + +++  +LA+Y AK  RG   +      + R + 
Sbjct: 364 PFDGRSLQVSASIGGAIVPDHAADEAGLMRIVDLALYTAKSGRGTTVIFDEAALARRLEE 423

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +   L LA + +E  + Y P + L     +G EAL++W HP  G +    F+ + E  
Sbjct: 424 NQLSLALVLAADRNEFVVHYQPKVDLTTGAHLGFEALVRWQHPDLGLLPPGRFLPLMEGT 483

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I+ +   ++  + RD+ +W   A   P  + IN+    L+  E  E     + +    
Sbjct: 484 QLIRGMTRAVISAVGRDLKAW-KTAGFAPGPVSINLPEVLLVGQEGYEFFAGAVRENGLE 542

Query: 825 PSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                +  +E V +  + +R    + R  + G+S++LDDFGT  + L +L   PFD +K 
Sbjct: 543 WRDFAVEITEDVFLNRSADRILATVARFHQHGVSISLDDFGTGFASLVHLRDFPFDELKI 602

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S + G  +   +  I+R++I +A+++    +A+ I  E   + LT  GCD  Q  H A
Sbjct: 603 DRSFVDGIGKDARSEQIIRAMIHLAQSLGKRCVAEGIETEGQRRFLTDAGCDVGQGYHFA 662

Query: 942 SPLGFNSILKLLKERFPLVKN 962
            P       K L +R   +  
Sbjct: 663 RPEPAALAGKRLPQRAAAIDR 683


>gi|259416604|ref|ZP_05740524.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348043|gb|EEW59820.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 904

 Score =  370 bits (949), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 146/823 (17%), Positives = 298/823 (36%), Gaps = 77/823 (9%)

Query: 198 VASLLAIFLTIFYMVNRSS----MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
               +A   T   +V+ +       +    ++  +  +I    G    + N       + 
Sbjct: 91  FLFQMAFAATATTIVSGAVAERERFLGYMIVSIALSAFIYPIAGHW--IWNEAGWLRQLG 148

Query: 254 RA---CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG------IACIAILFCMSFYYP 304
                 + +  S      L   +       + G            +  +  L     +  
Sbjct: 149 FIDFAGATVVHSVGGWTALVAVIFLGPRLGRYGRKNRFFEENSISLVTLGGLLLWVGWGA 208

Query: 305 M-----------VTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIG 353
                       V   IAR  L++         I   +    RA LL+  ++   +    
Sbjct: 209 FNGGSTLAFNTNVGPVIARTMLSAAGAGLASIAIGLCIFRCVRAELLVNGFLGGLVASTA 268

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVIL-------IGFTVIQHVLATGYFSQGIFSDGER 406
               I+      I     V  +V   IL       +   +  H+ A    +  +     +
Sbjct: 269 GIHLISGPTAFLIGAAGAVAVIVARDILDALEIDDVVGAIPVHLAAGLLGTLAVAFAAPQ 328

Query: 407 QSL------------AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
            +L            A   +   +W    +   +        +       + G       
Sbjct: 329 DALPAGSRIAQLGVQAFGAAVVGIWVISCMTPLILLLKARGLLRARPRDEVRGLNLAENN 388

Query: 455 YIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADN------QFHWMIIRIRPMSNSNG 507
                 R+    +L+    + R G      R+  +        +++ ++ R+    +   
Sbjct: 389 Q-----RNMLLELLEEMKRHQRTGSFSSRVRIERSSELGVLAYRYNRVLDRVEEEIDQRM 443

Query: 508 DILRYIGIANDITEQ-----KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +R   ++ ++ E+     + + E    +A  D LTG+ NR      L  I    AT  
Sbjct: 444 ASIRKERMSREMAEEAFEAMRAAQEESAWSARHDKLTGLGNR----KHLEEIASAPATAQ 499

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIIL 621
                V+ +D+D++K IND  G  VGD VL    RRI + ++   D   R+ G+ F +++
Sbjct: 500 QAGTLVIALDLDRFKYINDTYGHEVGDMVLEQAARRISDKIQPGCDFAFRIGGDEFALLV 559

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +  +  ++   +   +  P+   + E+ V  SIGFA       T    L+ A+LA+
Sbjct: 560 EFSGSEAEAFEYCSDLLFELLQPVRYKDVELEVGVSIGFALCERD-ETLLSALRRADLAL 618

Query: 682 YHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y +K  G + V ++  +      +++ +  D   A  N E+ + + P I      I G E
Sbjct: 619 YASKADGRSCVNAYSSAIGAAHDEKMDLIRDFKQAFRNDEIKVTFQPQIDGKTGTIAGCE 678

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +W HPK G +    F+ IA+E+ M+  ++  +L+        +       P  I +N
Sbjct: 679 ALARWHHPKRGIVGPDVFVSIAKEVNMLAELDRRILDLALAAYWEFAQHNINLP-SISVN 737

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISL 858
           ++++ L    L E ++    +T    S +     E+V + + +      +  L+ +GI +
Sbjct: 738 VSAERLGHPGLIEELKQ---RTDLPASGLAFELLETVFLDHVDEDYAKQIDALKAMGIGI 794

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  + ++ +  +  D +K +    +      +R  ++R +I MA +     + +
Sbjct: 795 EIDDFGTGHASIAGVLALRPDRLKIDRMFTSDIDSKPERRDLMRGLIEMATSAGAATVVE 854

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +  E + K L  +G D +Q    A P+  +S L   ++    
Sbjct: 855 GVETEAEAKILADLGADVLQGYAFARPMDRDSFLAWAQDWNSG 897


>gi|188997461|ref|YP_001931712.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932528|gb|ACD67158.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 800

 Score =  370 bits (949), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 184/418 (44%), Gaps = 18/418 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT + NR+  ++ +   ++ S      +  ++++D+D +K+IND  G  +GD++L
Sbjct: 388 ANYDFLTRVFNRRKMMELIQKNIENSK-----KFAILMLDMDDFKRINDTFGHDLGDEIL 442

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + + +  + +  DI+ R  G  F I+    +    +       +     P+ + + +I
Sbjct: 443 KEIVKILKNIRRQQDIIGRYGGEEFIILSPDADGKEALNIAEDIRKAISEKPVVVRDNKI 502

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-- 710
            ++ SIG A +     + SE+LK A++A+Y AK  G  +   + +       + ++ +  
Sbjct: 503 YISVSIGIAEFPIHGNSPSELLKAADIALYKAKKEGK-NKAVYLIPEEVKKIISLEFEFK 561

Query: 711 --LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP-KWGNISSSEFMLIAEELCMI 767
             +  A++N      + PI+      I G E L +     +   I + +F+  A +  ++
Sbjct: 562 DAILDAIKNDRFVPFFQPIVEAKTGNIYGYEVLARIYDEKENKYIPAYQFINNAIKYGLV 621

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + I+  + E+  +               + +N++   +  +   E +  L       P  
Sbjct: 622 EEIDKIIQEKAIKYFSE-----KKLNKCLFLNMSKNFIYKSGNLENLYNLCVSNGLKPEN 676

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E   + + +  + L+   + +G    +DDFG   S   YL +   D +K +GSL
Sbjct: 677 VYLEITEEEAILDFKNVKELIQYGKSLGFRYAIDDFGAGYSNFVYLKHFNVDIIKIDGSL 736

Query: 888 MTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +    +      I+ +II +AK+    ++A+ +  E +   L ++G DY+Q      P
Sbjct: 737 VANIHQDLDNQIIVENIIRIAKHKNIKVLAEMVELEEEKDILIKLGVDYLQGYLFGKP 794


>gi|152964311|ref|YP_001360095.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358828|gb|ABS01831.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 775

 Score =  370 bits (949), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 112/442 (25%), Positives = 211/442 (47%), Gaps = 22/442 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LTG+PNR++  + L        T  ++  T++++D+D +K++ND  G A GD
Sbjct: 330 RRLALTDDLTGLPNRRALAEALRRT-----TTQDVPATLLLLDLDGFKEVNDTHGHAWGD 384

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L     R+  L+    +LAR+ G+ F ++L  +  +      A  +  ++  P  +  
Sbjct: 385 RLLRLAAERVQPLVPPGGLLARVGGDEFALLLPGDVPAGD---TAARVGAALGEPALVGS 441

Query: 650 REITVTASIGFASWTSSKITSS---------EMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           R  +  +S G A+W  +              E+L+ A+ AMY AK  GG           
Sbjct: 442 RWTSTGSSTGVATWPFTDHDPRTDPGTDPAGELLRRADAAMYVAKRAGGGWASYDDDQDR 501

Query: 701 RSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +     + E+L   +   +L   Y P + +     VGLEAL++W+HP+ G ++   F+ 
Sbjct: 502 AARAQRVLAEELASGIAAGQLTAHYQPQVDVRSGRTVGLEALVRWEHPRRGTLAPGAFLD 561

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  +   +L R ARD   W  Q +   + I +N+A+  LL+  L   ++ ++ 
Sbjct: 562 LAESHGLMAEVTGTVLRRAARDAARWHRQGHR--LRISVNLATSCLLNPALPLLVEQVLD 619

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P+ + L  +E+ +M  P RSR  +  L ++G S+++DD+GT  S L+YL  +P  
Sbjct: 620 ETGLDPAALVLEITETTLMAEPARSRETIEDLLRLGTSVSIDDYGTGYSSLAYLQDLPAA 679

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + +         +  AI+ S   +A ++   ++ + +     ++ L  +G D  Q 
Sbjct: 680 ELKLDRAFTVRLTGDPRTAAIIASTADLAHSLGLRMLVEGVEDAETLRRLAELGVDETQG 739

Query: 938 SHVASPLGFNSILKLLKERFPL 959
            H A P+    +   L  + P+
Sbjct: 740 YHHAQPMPAADVPGWLAAQVPV 761


>gi|119713437|gb|ABL97498.1| CwatDRAFT_3323-like protein [uncultured marine bacterium
           HOT0_02H05]
          Length = 315

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 155/300 (51%), Gaps = 5/300 (1%)

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
           +G A +      +  +LKNA+ A+Y  K  G NH + +        ++   ++  L  AV
Sbjct: 1   MGIAIYPEDGQETEILLKNADAALYRTKESGRNHYQFYNPQMGVEIAENFTLENQLHQAV 60

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +N E+ L Y P I +   ++ GLEALI+W  P+ G I   +F+ +AE+  +I  +  ++ 
Sbjct: 61  KNGEMILHYQPQINIKTGQVYGLEALIRWKSPQLGLIKPGKFIPLAEKTGLILPMGEWVR 120

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   +    W+ Q  +PP+ I +N++++ L    L E ++  +      P  ++L  +ES
Sbjct: 121 KTACQQNKKWQ-QMGLPPVRISVNLSAQQLQQPNLIETVENTLESVGLDPKWLELEVTES 179

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           ++M N   ++  L  LR++G+ +++DDFGT  S L YL   PFDT+K + S +    +  
Sbjct: 180 MLMKNITIAKKTLQELREMGVYISMDDFGTGYSSLGYLKKFPFDTLKIDQSFVKELNQSS 239

Query: 896 I--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               I+ +I+ +++     +IA+ +  +  +K L  + C+ +Q    + PL    +LK L
Sbjct: 240 QDLHIISAIMTLSRGFNLRVIAEGVENQEQLKLLKELNCEEMQGYLFSRPLSSEDVLKYL 299


>gi|320333567|ref|YP_004170278.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Deinococcus maricopensis DSM 21211]
 gi|319754856|gb|ADV66613.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Deinococcus maricopensis DSM 21211]
          Length = 862

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 133/609 (21%), Positives = 246/609 (40%), Gaps = 30/609 (4%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  +   +A+T       ++     G    V+    T           ++         
Sbjct: 270 ALGGVPATLAVTHAGRAYDVRFCASAGGHAAVLWADRTAANARDRALRAAEATLDA---- 325

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +  + D V   D              +LG+  G +      W               
Sbjct: 326 --VLRATHDGVLLLDPAGHVQRANHAAQELLGVDPGGL--TPDTWSAR---TRWPAGHAA 378

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             + V         E  +    +    +++R  P+    G ++      +D+T Q++S  
Sbjct: 379 PPAVVASGGTLPPEEITLTPRADAPRHLLVRADPLPEDFGGVVA----LHDLTPQRRSTL 434

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR  FL+RL   L  +         VMV+ +D ++ +  VLG A 
Sbjct: 435 QLQQRATSDPLTSVANRAHFLERLDGTLRDA------PAAVMVVSVDGFRDVQAVLGPAA 488

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +LV +  R+  L +  D++ARL+ + F ++L    + +  A  A  +  ++     L
Sbjct: 489 ADRLLVEVAARLQRLFRDRDLVARLAEDTFAVLLWGVQDPVNAARVAQRVHAAMLPTFRL 548

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
                T TAS+G A   +    +   +++A  A+  A+ RG      F      + R  +
Sbjct: 549 GRTPTTRTASVGLALVPA-GANAEGSVQDALTALRRAQGRGVGGTALFEAGMHEAARQEL 607

Query: 708 K--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +  ED   A+ +  L L Y PI+RL D  +V  EA ++W HP  G +S  +F+ +AE   
Sbjct: 608 ELLEDFRAALRDEGLELHYQPILRLADGRVVAFEAFLRWPHPTRGLLSPDKFLHVAETGG 667

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           + +A+ L++++       +WR         + IN++ + LLD  L   +           
Sbjct: 668 LSRAVGLWVVQAATAQQRAWRSAHPHLRTRMNINLSVRQLLDTPLVSDLVTHARSAP--- 724

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++   +E+ ++ +   +   L  LR +G +LTLDDFGT  S L+ L  + FD +K + 
Sbjct: 725 -DLEFEVTETGLLDSGSAAFGTLDTLRNLGCTLTLDDFGTGTSSLTSLERVAFDRLKVDR 783

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +L      +E++  I+  I  +A  +  ++IA+ I     ++ L   GC + Q    A P
Sbjct: 784 ALTARVTGSERQQRIVGGIAQLATQLGMSVIAEGIETAAQLQALRHAGCTHGQGFLFARP 843

Query: 944 LGFNSILKL 952
           L     +  
Sbjct: 844 LLPEEAVAF 852


>gi|126665631|ref|ZP_01736613.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
 gi|126630259|gb|EBA00875.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
          Length = 785

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 204/449 (45%), Gaps = 12/449 (2%)

Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G++ +      D   +  +    I   A  D +TG+ NR + + +               
Sbjct: 324 GELRQLRDALRDTLARLIRREAEIRHAATHDEVTGLGNRNALMQKAEDGFSADK-----P 378

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            +++ + +     IND LG+  GD VL+ L++R+ + L    +LAR  G  F  ++    
Sbjct: 379 CSLIGLRVSDLSDINDTLGLEFGDKVLLGLSQRLRDNLPDASLLARTGGREFLALIPKL- 437

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +   +   A+A+R     P+N+     ++ AS+      +    ++E+ +   L    A 
Sbjct: 438 SPEALEQLALALRNIAESPLNIDNTPFSLRASLITLQLPTDASQTNELRRRVNLTFEQAL 497

Query: 686 HRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            +G                 + +  DL  A+ +  L++ Y P +     +++ +EAL++W
Sbjct: 498 QKGVAVARYEPGQDENHLRELKLVSDLHSAIRHDGLHMNYQPKLDNSTGQLLQVEALVRW 557

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP+ G IS  EF+ +AE+   I  +   +L+++A D  +W +        + IN+++ D
Sbjct: 558 IHPELGFISPEEFIFLAEQSGQINDLTDHILQKVANDARAWFNAGLDAG--VAINLSAMD 615

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L    L + + ++     ++  RI L  +E  +M +P  +   L RLR +G++L++DDFG
Sbjct: 616 LTWPALTDRVASIFGGWHHNMERITLEVTEGALMEDPVEAMATLNRLRNLGVTLSVDDFG 675

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S LS L  +P   +K + S +       +   I++S I MA  +   ++A+ I    
Sbjct: 676 TGYSSLSQLRKLPVQELKIDKSFVLRLNSEPQDQLIVKSTIDMAHGLGLKVVAEGIENLE 735

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
             K L   GCD  Q  +++ P+  + + +
Sbjct: 736 TWKLLQAWGCDVGQGFYLSRPVSADKLAQ 764


>gi|221124514|ref|XP_002166716.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 393

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 186/393 (47%), Gaps = 11/393 (2%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           + ++DID + +IND LG   GD +L ++  R+   L    +LAR+  + FG++  +E   
Sbjct: 2   MAILDIDDFSEINDALGHQQGDRLLQAVADRLKLELGPDAVLARIGSDTFGLMGPAE--- 58

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                  + +      P  + +  + VTA++G  S  S  +   + LK+A +A+  AK  
Sbjct: 59  ---VVDPLRVLALFRTPFLVQDDAMVVTATMGLTSLFSGGVCGRDALKDANIALKRAKKS 115

Query: 688 GGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                  F         +RV + + L  AVE+  L++VY P I L+   ++G+EALI+W 
Sbjct: 116 RRGSFVFFSAEMGSDIRERVRLLQSLRSAVESERLFIVYQPQIDLVSGAVIGMEALIRWR 175

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +     +    F+ +AE   MI AI  ++L     +++  +       + + +N++    
Sbjct: 176 NEDGTFVPPDRFIPLAEASGMIVAIGDWVLRMACHELVRLQGLGLG-DVRMSVNVSQIQF 234

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              E  + + A +  T  SP+ ++L  +ESV M + E     L  +R++GIS+ +DDFGT
Sbjct: 235 RHPEFLDKLNAALLDTRISPNCLELEITESVAMEDAEFMLETLHGVRQLGISIAIDDFGT 294

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS L  +P D +K + + ++          I   +I + +N++  +IA+ I     
Sbjct: 295 GYSSLSQLRQLPIDRLKIDRAFVSELGGDVLGGHIASMVIELGRNLQLKVIAEGIETPEQ 354

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              L  +GC   Q    A P+    + + L+ R
Sbjct: 355 ASRLKDLGCHEGQGYLYAKPMTSPLLKEWLQAR 387


>gi|83721534|ref|YP_441076.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
 gi|83655359|gb|ABC39422.1| EAL/GGDEF domain protein [Burkholderia thailandensis E264]
          Length = 778

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 117/607 (19%), Positives = 226/607 (37%), Gaps = 46/607 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + +  L  G     +     R   A++  GD V             P    ++G+ + 
Sbjct: 178 FRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLAD 237

Query: 444 SMHGPI--------RNWLPYIHINDR---------DNFRTILDSFVGYRRGRLQYEFRVR 486
              G          R        +D                 D+ +G        +  + 
Sbjct: 238 DCRGRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLY 297

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIG-----IANDITEQKKSLEGILCNAFQDNLTGI 541
            AD     +      ++  +G   R  G     +   +  +   +  +      D LTG+
Sbjct: 298 RADGGAIAVRATASSIAPPSGHARRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGL 357

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F  R+   L  +         ++ ID+D ++ +ND  G A GD +L +L  R+  
Sbjct: 358 PNRAEFERRVDFALAANVRGP---VALLFIDLDCFRIVNDTCGYAAGDAMLAALAARLVA 414

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGF 660
                D++ARL G+ F ++L    +    A  A  +R S+         +  +VTAS+G 
Sbjct: 415 CAASTDVVARLGGDEFCVLL-DAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGV 473

Query: 661 AS--WTSSKITSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLA 714
           A            + ++ A +A   AK RG N V+         +   + V     +  A
Sbjct: 474 ALLGAPDRVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQA 533

Query: 715 VENSELYLVYHPIIRLMDE------EIVGLEALIQW--DHPKWGNISSSEFMLIAEELCM 766
           +E  +  L   PI+    +           E L++      + G      F+  AE   +
Sbjct: 534 LECDDFCLYVQPIVDTATQGASRPPRARRGELLLRMGALGEREGVAPPGHFIRAAERYGL 593

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I+ +++  +   +   R +         IN++   + D    + +    ++T  +P+
Sbjct: 594 VTDIDRWVVRTVFDALARARSRRFSE---YAINLSGISIGDERFLDYVLEQFARTRVAPA 650

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I    +E+  + N   +   +  L+ +G    LDDFG+  + LSYL  +P + +K +GS
Sbjct: 651 LICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGS 710

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +TG      +  I+ SI  +   +    IA+ +     +++L  +G DY Q  ++  P+
Sbjct: 711 FVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPV 770

Query: 945 GFNSILK 951
            +    +
Sbjct: 771 PWREAAR 777


>gi|262395470|ref|YP_003287323.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|262339064|gb|ACY52858.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 636

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 185/441 (41%), Gaps = 7/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +K + + +      D  TG  NR +    +   L            V+ I     + 
Sbjct: 189 IDRRKAAEKQVSYQKTHDQGTGFLNRAALESVVGETLGTLDHSQQSLL-VINIGFSNARS 247

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           I    G    D++L     R+G+      +  R S N   +++   +  +K+      + 
Sbjct: 248 IQTRYGFEAFDEILKEFRYRLGKRESSYFVTGRPSSNDLVLLIWGNDIDMKLRKLLDDIT 307

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
                   + + E+ + + IG      +   + ++L+NA  AM   K  G          
Sbjct: 308 NIGLGSFYIKDTEVHLNSYIGVVQAHQT-SNAKQLLQNACYAMLLCKESGEAYSYFCESH 366

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S+  ++   ++  L  AV N +L L + P +     + +G EAL++W HP  G++S+   
Sbjct: 367 SNELNNHNQLESYLLQAVRNDDLMLYFQPKVHPHTHKWIGAEALLRWRHPILGDVSNEAL 426

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  F+L         W +        I +N++   L +    E +Q L
Sbjct: 427 IHMAEQNGLIFEVGSFVLRTAIDKAKQWSELI--DNFKIAVNVSPIQLQNVNFAEQVQHL 484

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         ++L  +ES ++ +   +R  L +L ++G++L+LDDFGT  +  SYL   P
Sbjct: 485 LESFHLPAHFLELEVTESALIADEIVARTTLNKLHELGVTLSLDDFGTGYASFSYLKKYP 544

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +     ++   AI+ SII +AK ++  ++ + I      + L   GCD  
Sbjct: 545 FDAIKIDKSFVQQMEKSDDDRAIICSIIHIAKKLDLQVVIEGIESPQQEQFLIGEGCDIG 604

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q      P+  N   + L  +
Sbjct: 605 QGFLYGKPMPCNEFEQSLFNQ 625


>gi|296165035|ref|ZP_06847590.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899683|gb|EFG79134.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 769

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 110/431 (25%), Positives = 195/431 (45%), Gaps = 17/431 (3%)

Query: 515 IANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           +   +TEQ   +   +   A  D LTG+PNR    +RL   +            ++ +DI
Sbjct: 336 VQRMLTEQLVAAKRRLAYQAHHDALTGLPNRLLLAERLDEAIR------GGPFVLIFVDI 389

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K++ND  G A GD++L +++ R+ E L   D LAR+ G+ F I+     ++ ++   
Sbjct: 390 DDFKEVNDRFGHAAGDELLCAISARLQECLGQSDTLARIGGDEFAILTAGAVDAPEM--V 447

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFAS--WTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           A  +R ++  P ++    + V AS+G  S        TS ++L+ A+++MY  K  G + 
Sbjct: 448 ADQLRVALRSPFSVHGTSVRVRASMGLVSPGHHDGPPTSDDLLRQADISMYTGKRLGKDT 507

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
              +R +   S+       L          L Y P++ L D   V +EAL +W  P    
Sbjct: 508 AVVYRPAFSASEDFTTALRLANGAVPQGFQLKYQPVVALPDGTPVAVEALARWRAPSGVQ 567

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +AE   M   ++  +L++    I     Q     + + +NI +  L   +  
Sbjct: 568 IPPQTFVSLAEANGMGAQLDALVLDQACAQI-----QHAGLDLDLHVNIGAARLGSIDFE 622

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   +++   SP R+ L  +E+V + +       + RL ++GI + LDDFGT  + L+
Sbjct: 623 HAVSRTLARHGLSPQRLVLEITETVPIVDLVEGAAAIRRLNELGIRVALDDFGTGFNSLT 682

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           YL  +P   VK +  L  G    R   L RS+I + + +   +IA+ I      + + + 
Sbjct: 683 YLHELPVQVVKLDRGLAAGVQPGRNLTLYRSVIGLCEALRLKVIAEGIETAEQAQTVFQA 742

Query: 931 GCDYIQDSHVA 941
           GC   Q     
Sbjct: 743 GCGLAQGHLFG 753


>gi|114319791|ref|YP_741474.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226185|gb|ABI55984.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 585

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 173/425 (40%), Gaps = 7/425 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D  T +PNR  F +++ T ++ +         V V     + ++ +  G    D    
Sbjct: 163 NYDRATRLPNRNLFHEQVRTAIEAAKAKGESVHVVAV--HTPFTRVLETFGQRGLDHAAA 220

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNS-LKIADFAIAMRKSIAMPINLLEREI 652
           +   R   L      LARL    +G +L  + +   ++      + K    PI +    I
Sbjct: 221 ACAERFCHLAGDDVGLARLGTEHWGAMLFDDASPMDRVLPLCTRLSKVERHPIEVAGEPI 280

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
                IG AS+      +  ++  A +A   A   G     S        D +  +  L 
Sbjct: 281 RPQVRIGVASYPDDGSDAETVISAANIAATQANE-GEPAFFSPSWREAVLDHLRTEAALH 339

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+E  +  L   P +RL D  + G EALI+W  P    +   +F+ +AE   +I+ I  
Sbjct: 340 DALEQGQFELWLQPKLRLADNRVAGAEALIRWRLPSGELVPPGQFIPVAESSGLIRRITP 399

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L    R +   R         + +N+   D+  ++    +QAL ++    P  I+L  
Sbjct: 400 WILATACRTVAGLRADGAR-DFVLAVNVTPADVSASDFAARLQALCAEHDLPPQAIELEL 458

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +E+++      +   L  LR++G  + +DDFGT  S L YL  +P DT+K +   + G  
Sbjct: 459 TETMLCETGADTIGRLRALREVGFGIAIDDFGTGYSSLGYLHQLPVDTLKIDKQFIDGVP 518

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  + R+II +A+      +A+ I  E  +  L   G    Q  ++A P+  N   
Sbjct: 519 GEAGSDTVTRAIIHLAREFALETVAEGIENEDQLAYLRAAGVVLGQGYYIARPMPANDFA 578

Query: 951 KLLKE 955
           + L E
Sbjct: 579 QWLAE 583


>gi|77164833|ref|YP_343358.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883147|gb|ABA57828.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 584

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 191/452 (42%), Gaps = 19/452 (4%)

Query: 517 NDITEQKKSLEGILCNA-----------FQDNLTGIPNRQSFLDRLTTILDLSA-TDDNL 564
            + TE+   L      A             D LTG+PN+  F++ L   +  ++  +  +
Sbjct: 135 REFTERVSMLLRTRQLALTQRSHLAYLVNHDRLTGLPNQTLFMEHLIDSVRDASILNKQV 194

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             TV+ I + +       LG    + V+ + + R+  +L+   +LARL+   +G+I    
Sbjct: 195 YVTVVHIPLAR---TMRSLGHYGLERVVANCSTRLNAVLRDEVLLARLTTEEWGLIHRPG 251

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               ++ +    ++     PI +    I +   IG   +      ++  L+ A  A+   
Sbjct: 252 ETLSRVLEICRRIQLLADEPIPVRGEHIRLAPRIGVGIYPDDSSDANGTLECAMAALSED 311

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           K        S R+       +  +  L  A+E  E  L + P +    E+ VG+EAL++W
Sbjct: 312 KGP-APVFYSRRIQHEALRFIRTESKLYEALEKEEFELWFQPQVSFETEKPVGVEALVRW 370

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P        EF+ +A     I  I+ ++LE+    + +WRD        + +N+  +D
Sbjct: 371 RLPNGELAPPGEFLPVAASTGQILRIDRWVLEKACATMNAWRDDNIGLQ-RVSVNVTVED 429

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +  E ++  + +    P  ++L  +E+    +   +   L  LR  GIS+ +DDFG
Sbjct: 430 IDAPDFVEFIKRALDQYQLPPPSLELELTETTFFKSSPANLEKLNLLRSEGISVAVDDFG 489

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S L+YL  +P  T+K +   +    +     AI+ +I+ +AK  +   +A+ I  + 
Sbjct: 490 KGYSSLNYLHKLPITTLKIDKEFIENAINNPTSAAIVETIVWLAKKFKLETVAEGIETKA 549

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++ L  +G    Q    + P+    + + +K
Sbjct: 550 QVEFLRSLGVTTAQGFFYSQPIPEAELREWIK 581


>gi|229827408|ref|ZP_04453477.1| hypothetical protein GCWU000182_02796 [Abiotrophia defectiva ATCC
           49176]
 gi|229788346|gb|EEP24460.1| hypothetical protein GCWU000182_02796 [Abiotrophia defectiva ATCC
           49176]
          Length = 758

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 135/777 (17%), Positives = 272/777 (35%), Gaps = 66/777 (8%)

Query: 184 TVNSFTLYRGIIIGVASLLAIF-LTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL 242
            V    +     + +   L         +V  S  L+    + + VL       G     
Sbjct: 36  RVRLLLMITMASVVIQIALLFAKNLPTALVLHSIYLVSICGIRYAVLKIAIEVTGH---- 91

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
                             + +   +F+   +        +  +        A +    + 
Sbjct: 92  -----EINNTKIFRILYIIIALDAVFVLSNIFTKELFI-IEKVKIGQWYYHAAIMQPLYT 145

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
              + A    + +A I++Y    + +   + Y      I       +  I  +       
Sbjct: 146 LHSIIAYSLLMLIAFIIIYKIVGLSFIYWRKY------ILLLFSFSLAIIINFFYKFLNY 199

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
             DI       G V   +++               Q    D    S  V  + D++   D
Sbjct: 200 AVDISVLGYSAGAVAAYLIL-----------LESKQVTLIDK-MLSYIVSKTDDMMIFLD 247

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQY 481
           +    +       T   +                  +D  +    ++           + 
Sbjct: 248 VDDVCIYLNERAKTFFDVE-----------------DDYSSVVGQINKMFSLSNFDSSKI 290

Query: 482 EFRVRAA---DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           E+ V  +     +     I  + +   NG +        D T +          A  D L
Sbjct: 291 EYSVLCSMNDKGEMKHYDILYKKLY-RNGKMEGSYYRIKDRTIEVDIFNKDKYKATHDKL 349

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N   F D++  IL     +      ++  DI  +K IND  G  +GD VL S+  +
Sbjct: 350 TGLFNSDYFCDKVEEIL---KDNPETEYYILCSDIKDFKLINDSFGKNIGDRVLNSIAWK 406

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + E      +  R +G++F +++  +    ++                       +   I
Sbjct: 407 LREKTPKDTLYCRQAGDKFCVLIEKDKYDEEM------FINIAKEVSMTDGIHYPINMQI 460

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           G        I+SS M+  A +A+   K   +        R+   +     +  +L  A+E
Sbjct: 461 GVYKIEDRSISSSAMIDRAGMAIAANKEDYQNKVFYYDDRIREAKYWEQRLSGELDSAIE 520

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N++L +           +++G EAL++W HP  G ++   F+ + E+  +I  ++LF+ +
Sbjct: 521 NNQLKVFLQAQCNGE-GKVIGAEALVRWLHPTEGMLAPYRFIPMFEQNGLISKVDLFVWD 579

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           R A  +  W+D+      +I +NI+  D    ++ +   +++ K    P R+KL  +E+V
Sbjct: 580 RAAGLLRKWKDEGKGE-YYISVNISPADFYFLDIYKEFVSIVEKYKIEPFRLKLEITETV 638

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEK 894
           +M   E   +++ +LR  G ++ +DDFG+  S L+ L  I  D +K +   +  T   EK
Sbjct: 639 IMKEIESRLMIVEKLRDYGFTVEMDDFGSGYSSLNMLKEISVDVLKLDMGFLYKTKDEEK 698

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              I+  I+ ++K ++  +I + +      + L  + CDY Q    A P+      K
Sbjct: 699 SRKIIGMIVQLSKALDMPVICEGVETHSQFEFLRNIKCDYFQGYLFAKPVSIEDFEK 755


>gi|261251618|ref|ZP_05944192.1| putative diguanylate phosphodiesterase (EAL domain) [Vibrio
           orientalis CIP 102891]
 gi|260938491|gb|EEX94479.1| putative diguanylate phosphodiesterase (EAL domain) [Vibrio
           orientalis CIP 102891]
          Length = 739

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 209/510 (40%), Gaps = 29/510 (5%)

Query: 460 DRDNFRTILDSFVGYRRGRLQ--YEFRVRAADNQ----FHWMIIRIRPMSNSNGDILRYI 513
           D    R  +   +  R   L+            +    +  +    RP+ + +  +L   
Sbjct: 246 DSHKIRESIMRCLESRTSLLETGLTLYFSTEQGRGLAAYVDIH---RPLEDLDRHLLEVF 302

Query: 514 GIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                +  +       +   AF D+L  IPN       L   L       +    +  +D
Sbjct: 303 CANLSVGFDNVLLYNKLEEQAFTDSLLRIPN---LNSLLRYQLSNPKLHHSSLLAL--VD 357

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +   ND  G  VGD +L ++  R+  L      LAR   + F +I           +
Sbjct: 358 IDDFSAFNDSFGHKVGDLLLKAVAHRL-TLAFPNCFLARGGSDVFALI-------GNAEE 409

Query: 633 FAIA-MRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAK--HRG 688
                +         +  +   + AS+G            +E  K+A++A+  AK  HRG
Sbjct: 410 MDTRSILNVFDESFFIDSQPFKIMASVGEVELNEQDNANLAERYKDAQVALKQAKLHHRG 469

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                S  +     DR+++  +L  A++N+ L+L+Y P   L   ++ G+EAL++W +  
Sbjct: 470 SVIHFSKDMGQSARDRMLLLSELKEALDNNALFLMYQPKYHLESLKLTGVEALLRWRNKN 529

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +   +F+ +AE+  M+  I  F+L++  +      +      I I IN++   L + 
Sbjct: 530 GNLVPPDQFIPLAEQSGMMVNIGKFVLKQACQQFHQLLNS-GFADITIAINVSPAQLEEP 588

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           + C  +++ +  +   P ++++  +E++   N +  +  L R+R +G  + +DDFGT  S
Sbjct: 589 DFCADLKSAMQSSHIPPEQVEIEVTETIAANNLDDIQQALNRVRALGCKVAIDDFGTGFS 648

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            LS L  +P   +K + + +    +   +I + I+ + + +   + A+ I  +   ++L 
Sbjct: 649 SLSILHTLPATRLKIDRTFVDAMEQDD-SIAKMIVNLGQTLGMEVTAEGIETQAQYQQLK 707

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFP 958
              C+  Q    A  +  + ++  L +  P
Sbjct: 708 AFNCEEGQGWLFAKAMELDELIAFLAKPMP 737


>gi|76810505|ref|YP_332218.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|76579958|gb|ABA49433.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b]
          Length = 806

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 182 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 241

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 242 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 301

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 302 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 361

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 362 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 418

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 419 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 477

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 478 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 537

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 538 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 597

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 598 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 654

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 655 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 714

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 715 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 774

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 775 AATLQKLAALGVDYAQGYYIGRPVP 799


>gi|317471950|ref|ZP_07931282.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900354|gb|EFV22336.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 644

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 105/427 (24%), Positives = 195/427 (45%), Gaps = 16/427 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +++ F   +  IL     + + R  V+  DI+ +K INDV G   GD +L  
Sbjct: 137 YDRLTGLYSKEFFYQLMKDIL---MRNPDDRYDVICSDIENFKLINDVFGNTTGDQLLCG 193

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRKSIAMPINLLEREIT 653
           +     + +K   I  RL+ ++F  ++    +    I   A     ++     L    I 
Sbjct: 194 IAHMYEQEVKGMGICGRLNADQFVCMIEHREDYRDDIFRKANEQINNL-----LDGGTI- 247

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
                G  S     +++ +M   A LA    K + G +   +      S      I + +
Sbjct: 248 -VMKWGIYSAADRMLSAEQMCDRALLAARSIKGQYGKYYALYDDKLRSSLLHDQAIADSM 306

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   +  +   P  R++D  + G EAL++W+HP+WG  S + F+ + E+   I  ++
Sbjct: 307 EDALSGDQFQIYLQPKYRIIDGALAGAEALVRWEHPEWGVQSPANFIPLFEKNGFITKMD 366

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E+  R +  W D+   P I + +N++  D+ + +L   +Q  + K    PSR+ L 
Sbjct: 367 QYVWEKTCRVLQEWEDK-GYPQIPVSVNVSRADIFNADLSCILQRTVKKYGLHPSRLHLE 425

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES     P +    +  LR++G  + +DDFG+  S L+ L  +P D +K +   +   
Sbjct: 426 ITESAYTETPSQIIDTVAHLREMGFVIEMDDFGSGYSSLNMLNNLPIDILKLDMQFIQSE 485

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T       I++ II +A+ +  +++A+ +  +  +  L   GCDY+Q  + A P+     
Sbjct: 486 TAKPVSQGIMKFIISLARWMHLSVVAEGVETKEQLSRLEEAGCDYVQGYYFAKPMPCREF 545

Query: 950 LKLLKER 956
            KLL E 
Sbjct: 546 EKLLAEE 552


>gi|54302315|ref|YP_132308.1| hypothetical protein PBPRB0635 [Photobacterium profundum SS9]
 gi|46915737|emb|CAG22508.1| hypothetical protein PBPRB0635 [Photobacterium profundum SS9]
          Length = 536

 Score =  369 bits (947), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 101/456 (22%), Positives = 208/456 (45%), Gaps = 17/456 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L        I + + +      NA  D LTG+ NRQ     L        T +     +
Sbjct: 80  LLAMHLSLKSINQYQITAMNERFNAQHDALTGLKNRQFMWQNL-----KLKTQNKQHFAL 134

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL------ARLSGNRFGIILI 622
           M+ID+D +K++ND  G   GD +L ++  RI  + K  + +       RL G+ F IIL 
Sbjct: 135 MLIDLDNFKQVNDAFGHFAGDALLKAMATRIQAIFKKKNTINNSVELIRLGGDEFAIIL- 193

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                 ++ +    ++  +  P  +    + +  SIG A +     + +E++K+A+ AMY
Sbjct: 194 DYTQKSEVTNCIQLLQSILKKPFFIRGTMVHIQMSIGIACYPEHSCSITELIKSADAAMY 253

Query: 683 HAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK    G    S          + + + +  A+  +E  L Y PI       +  LEAL
Sbjct: 254 KAKKQASGFCFYSMDYERSSIQHIQLNDKIRNALAKNEFSLHYQPIFENDGRTVYSLEAL 313

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W       IS + F+ +AE+  +I +I  +++      +  W+D  +   I   IN++
Sbjct: 314 IRWQQQDGSYISPALFIPVAEKAGLISSITQWVIHAAFTQLEIWQDSGHYRHIQ--INLS 371

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DL ++ + + ++  +     +P+++ L  +ES ++ +   ++  L +L  +GI+L++D
Sbjct: 372 ACDLQNDGIVDYLKEQLDTFNINPNQVILEITESAMIADITLAKNALRKLYALGITLSVD 431

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  + L+ L  +P   +K +   +   +      AI+ SI  +A +I   ++ + I 
Sbjct: 432 DFGSGYTSLTMLSDMPIKQIKIDAQYVIEMSRKNNNFAIISSIAFLANSIGAKVVIEGIE 491

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  + +++ +    +Q   ++ P+    + ++   
Sbjct: 492 NQKVLTKVSTLETALLQGHFLSQPMKAEQLEQMFSS 527


>gi|121588085|ref|ZP_01677834.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121547681|gb|EAX57777.1| GGDEF family protein [Vibrio cholerae 2740-80]
          Length = 627

 Score =  369 bits (947), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 109/525 (20%), Positives = 224/525 (42%), Gaps = 17/525 (3%)

Query: 438 LGLASGSMHGPI---RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           L   +G + G +          H  D+   +T  +S     +   Q E  ++   +    
Sbjct: 111 LQWPNGELFGSLCVTDRQARPFHSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFK 170

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +++ +++ N  +        +I +++ + + I      D  TG  NR +   +L   
Sbjct: 171 VRHKMQSIASLNQSL------HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--A 222

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           + L+   ++    V+ I     +++   LG  + DDVL  L  R+G + +   + AR + 
Sbjct: 223 MQLAQLAEHEELAVIHIGFANARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNS 282

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               +IL +     ++      +  +           + +   IG A    +     ++L
Sbjct: 283 TNLTLILKAHPLDTQLNQLCHRLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLL 341

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           ++A  +M   K  G      S  ++   + +  ++  L  AV N++L L + P + +  +
Sbjct: 342 RHAVSSMLACKDSGYKVFFHSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQ 401

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W HP  G  S+   + +AE+  +I  +  F+L +  +    W      P 
Sbjct: 402 RWVGAEALLRWKHPVLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PT 459

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++S  L ++   E ++ L++   +   +++L  +ES ++ +   +  +L RL  
Sbjct: 460 FCIAINVSSVQLKNSGFVEQIRDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHT 519

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G++L+LDDFGT  +   YL   PFD +K + S M     +E    I+RS++ +AK +  
Sbjct: 520 LGVTLSLDDFGTGYASFQYLKKFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNL 579

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++ + I      + +   GCD  Q      P+        L+  
Sbjct: 580 NVVVEGIESTQQEQFILEQGCDVGQGFLYGKPMPSEVFTLKLESH 624


>gi|126441257|ref|YP_001057678.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei 668]
 gi|126220750|gb|ABN84256.1| eal/ggdef domain protein [Burkholderia pseudomallei 668]
          Length = 787

 Score =  369 bits (947), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN------------------DRD 462
                      P    ++G+ +    G        +                     D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAAPAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|51241737|dbj|BAD36773.1| di-guanylate cyclase [Gluconacetobacter xylinus]
          Length = 580

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/555 (23%), Positives = 235/555 (42%), Gaps = 30/555 (5%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGY 474
            IV   D+             I       + G   R      H  D   FR +  +  G 
Sbjct: 28  LIVAITDVRGVITYVNDRFCEISRYPREELLGATHRIVNSGYH--DASFFRQMYRTIRGG 85

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                +     RA D   +W+   I P  NS G +  Y+    +ITE   + + +   A 
Sbjct: 86  EI--WRGNICNRAKDGTLYWVATTIMPKPNSLGAVEGYVATRFEITELMNTRDRLKSLAA 143

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F + L   ++  + +      +++ D+D +K+IND+ G   GD VL  
Sbjct: 144 TDPLTGLFNRGGFNNMLQAAVEDKSQNITRDIMLVMFDLDGFKQINDIHGHHAGDVVLKV 203

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+  L+   D + RL G+ F +IL    +   ++     +   +  PI +    + V
Sbjct: 204 ISNRLLALVHPEDAVCRLGGDEFALILNHTLHKYPLSLMLEKLLAELEAPIEVGNTMVNV 263

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           + SIG +   +S+ ++  + KNA++A+Y AK  GG+    F +       +R  I  D  
Sbjct: 264 SGSIGVSPI-ASQESAESLQKNADIALYAAKRAGGHQARMFDITLHQHALERAQILNDAR 322

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             V+  +  L Y PI+         +EAL++W HP+ G +++  F  +  +  + + ++ 
Sbjct: 323 EGVQKDQFELYYQPIMNFSTGRCDQIEALVRWHHPQRGLLAAESFRDVFLDAALAQVMSP 382

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +++    D+  W    +  P  + IN++  DLL+      ++A I +     S   L  
Sbjct: 383 RLVKSFQNDMRMWNTSLDTYP-NLTINLSRLDLLNIGFQNDLEAEIKRQGGKASDYVLEV 441

Query: 833 SESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV--------KF 883
           SESV+     +R    L   +++G  LTLDDFG        L  +P   +        K 
Sbjct: 442 SESVLAGRRSDRVLQRLQDSKELGFQLTLDDFG--------LATLPISVLRTISFTQAKI 493

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +  L+      + A  ++  +I +A     ++    +  +  +  L  MG D IQ  +++
Sbjct: 494 SRGLVKDIETSQQACDVVAHLIGLAHAFGLSVTVSGVETKAQMDALREMGADRIQGFYIS 553

Query: 942 SPLGFNSILKLLKER 956
            P+   +++  L E 
Sbjct: 554 PPISAANLV--LAEH 566


>gi|114565059|ref|YP_752573.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114336352|gb|ABI73734.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 776

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 107/461 (23%), Positives = 218/461 (47%), Gaps = 18/461 (3%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P+  +  ++       + + E  +S E  L   +  DNLTG+ NR +   +L+ +L    
Sbjct: 313 PIKGAPAELQVLANTLSIMRENIESRENDLVYQSQHDNLTGLYNRLAAKQQLSLLLS--- 369

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               +  ++++IDI  ++ +N+++G A  DD+LV    R+  L     +++RL G+ F +
Sbjct: 370 ---KMHGSLVMIDIKNFRHLNNIIGFANADDLLVLFASRLESLSPTAQLISRLDGDSFLL 426

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNA 677
           +     +  K+ ++     + +  P ++   +I+V   +G    +S         ++++A
Sbjct: 427 LFQPGIHHEKLDNY----LRQLTNPFSIQGSKISVNVRVGIVDLSSDYDCNDIDTLIRHA 482

Query: 678 ELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           E+A+  A+    G               +MI  DL +A+   +L+LV+ P + +      
Sbjct: 483 EIALNQARVESLGIATYQQGEDERYLRELMIIRDLPIALAQGQLHLVFQPKVNIQSNHCH 542

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G E LI+W HP+ G I   EF+ +AE    I  I+ ++L    + +  W+ Q     + +
Sbjct: 543 GAETLIRWQHPELGFIPPDEFIRLAENSGNISMISDWVLNTTIKQLAQWQLQG--ISLTV 600

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN+++ DL + +L   ++ L+       + + +  +E  VM + +    +L + R IG+
Sbjct: 601 AINLSAHDLTNPQLPLDIEKLLISNHLPINALSIEVTEGAVMKDAQTVIAVLQQFRNIGL 660

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
           ++ +DDFGT  S L+YL  +P + VK + S +         + I+ S I + K +  +++
Sbjct: 661 AIAIDDFGTGHSSLAYLKLLPVNEVKIDRSFIKDIHTDATDLMIVDSSIRLIKGLNLSVV 720

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +     I  L  + CD IQ    + PL  +  +   ++
Sbjct: 721 AEGVESVEGINILRGLNCDIIQGYVYSKPLKADDFIVWFQQ 761


>gi|218132530|ref|ZP_03461334.1| hypothetical protein BACPEC_00389 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992640|gb|EEC58642.1| hypothetical protein BACPEC_00389 [Bacteroides pectinophilus ATCC
           43243]
          Length = 574

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 111/569 (19%), Positives = 214/569 (37%), Gaps = 30/569 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             L    + D ++ +D+ RD    +        L     +          + +D +    
Sbjct: 17  LDLIGQSTDDYLYFYDLDRDYYAISERATRAFALKDSRFYNASSVLGNLFYPDDAEYVLK 76

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            ++      R     E+R         W+  R   +   +      +G+  ++ +Q +  
Sbjct: 77  DIEQIHKGIRKEHNIEYRWLDKYGNPVWICCRGSVIQKED-HPAYLVGVITELGKQNRI- 134

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    D +TG+ N     DR    +   +        +M+I ID +K IND  G +
Sbjct: 135 ---------DKITGLYNSGVLRDR----ITFMSEVGESLAGLMIIGIDNFKGINDWHGSS 181

Query: 587 VGDDVLVSLTRRIGELLKFP----DILARLSGNRFGIILIS---ENNSLKIADFAIAMRK 639
            GD++L    R I   +         + RL G+ F I  ++     NS         +R 
Sbjct: 182 AGDEILYKTARFIECAINDAVGNAGQVFRLDGDMFAIFTMAPEITGNSDGFKKIYKDIRS 241

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +   +         T S G A +  +  T+   +   + A++ AK  G N+  ++    
Sbjct: 242 RVDAYMEESSYRCFYTISAGSAIFNIASTTADNAIMRGKFALHCAKLAGKNNYVAYNEEV 301

Query: 700 FRSDR--VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  + I+E+L  ++ N      + Y PI+      + G EAL++W+  K+G IS +
Sbjct: 302 HNEYIKKLDIQEELRRSINNGFEGFEIYYQPIVNPATNTLYGAEALLRWNSSKYGFISPA 361

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + I E   +I  +  ++    AR    WR+    P   + IN++   LL +++   M 
Sbjct: 362 LTIPILESSGLIIPLGKWITLTAARQCAKWRETY--PDFRMNINLSFVQLLKSDVLRDMV 419

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I +       I    +ES  + + + +R +LG        L +DDFGT  S L Y+  
Sbjct: 420 DKIDEVGVPHDNIVFEVTESGQLESNKYTRSVLGGFSDSNFKLAIDDFGTGYSNLRYVKD 479

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           + F  +K +   +    E      +++ +  +A ++   +  + +    ++K +  +  D
Sbjct: 480 MMFGLIKIDRLFIQNIDENEYNYMLVKHVTDLAHSLNLKVCMEGVETSKELKTVMSLKPD 539

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKN 962
            IQ  +   PL  N           LVK 
Sbjct: 540 CIQGYYYDKPLCRNDFECRYMHYNSLVKT 568


>gi|156977019|ref|YP_001447925.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156528613|gb|ABU73698.1| hypothetical protein VIBHAR_05804 [Vibrio harveyi ATCC BAA-1116]
          Length = 636

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 190/444 (42%), Gaps = 7/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K + + +      D  TG  NR +    L   LD   T+ +    V+ +     
Sbjct: 187 REIDRRKAAEKQVSYQQTHDQGTGFLNRAALEQVLDQTLDGIDTEQH-SLVVINVGFSNA 245

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G    D+VL     R+G       +  R S N   II+  EN   K+      
Sbjct: 246 RSIQTKYGFEAFDEVLKEFRFRLGHTESSYFVTGRPSSNDVVIIVTGENIETKVQHLLDD 305

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE-SF 695
           +         + + E+ + + +G      +     ++L+NA  AM   K  G ++     
Sbjct: 306 INHVSLGNFFIEDNEVHLNSYVGVVQAHKN-SYGKQLLQNACYAMLLCKESGESYRYLCE 364

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             S   SD   ++  L  AV N +L L Y P +   + + +G EAL++W HP  G++S+ 
Sbjct: 365 SQSQDISDHNKLESYLLQAVRNDDLMLYYQPKVLPHNHKWIGAEALLRWRHPVLGDVSNE 424

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W +        I +N++   L +    E ++
Sbjct: 425 ALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELV--DNFKIAVNVSPIQLQNVNFAEQIE 482

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L +L ++G++L+LDDFGT  +  SYL  
Sbjct: 483 HLLDTFHLPAHFLELEVTESALIADEVVARNTLNKLHELGVTLSLDDFGTGYASFSYLKK 542

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +     ++   AI+ SII +AK +E  ++ + I      + L   GCD
Sbjct: 543 YPFDAIKVDKSFVQQMEKSDDDKAIICSIIHIAKKLELQVVIEGIESTQQEQFLIGEGCD 602

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+  N   + L  + 
Sbjct: 603 IGQGFLYGKPMPCNEFEQSLFNQN 626


>gi|330951652|gb|EGH51912.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 630

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/487 (26%), Positives = 227/487 (46%), Gaps = 24/487 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V      + + G ++  + G   +   
Sbjct: 154 AQVALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAQEVLGRTAHEVG 213

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +    R++    L      +      E   R        + I +  ++ +N    
Sbjct: 214 IWTDTLQ---REHMLEELR----QKGRVHHREMNGRDKHGAPLVLDISVEFITLNN--TA 264

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI E K +   I   A+ D LTG+PNR   LDRL+  + L     NLR  ++ 
Sbjct: 265 CLLMNARDIGELKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 323

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK- 629
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++     S   
Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQDE 383

Query: 630 ----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               + + A  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y AK
Sbjct: 384 VTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 443

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +   +E I G EAL++
Sbjct: 444 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 503

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L    +       Q  +P     + +NI+
Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLKQGLIPENRFLMGVNIS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L ++  E ++  ++      S +KL  +E +V+ N + + L +  L+ +G+S  +D
Sbjct: 564 PRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 623

Query: 862 DFGTKCS 868
           DFGT  S
Sbjct: 624 DFGTGYS 630



 Score = 94.2 bits (233), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 8/166 (4%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +    +   L      + +    +R  LA+  +    WD DIVR+R+  +   A + G+ 
Sbjct: 12  VAAQSVSARLPLTDAERILQETRDRLELALELAQMGTWDLDIVRNRLQASARAALLHGMP 71

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +   +     +   +   +R   R +  + +   +  LQ  +R R  +     +  R R 
Sbjct: 72  ALPFNESGGQFFGSLPGEERRRMRALYAAALETGQDCLQVTYRFRLKNGTSRLLESRARI 131

Query: 502 MSNSNGDILRYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539
             +  G  +R  G   DIT+Q      ++ E     AF    D++T
Sbjct: 132 YRDEQGQPVRLSGTLLDITQQCAQVALEASEEKFAKAFHSSPDSIT 177


>gi|54294055|ref|YP_126470.1| hypothetical protein lpl1118 [Legionella pneumophila str. Lens]
 gi|53753887|emb|CAH15356.1| hypothetical protein lpl1118 [Legionella pneumophila str. Lens]
          Length = 780

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/556 (21%), Positives = 235/556 (42%), Gaps = 20/556 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  + + +   D     + T      + G     + G    +L     N  + F   L +
Sbjct: 100 ISSAFEGIIITDPEGTIIETNNAFMKMTGYTEQEVIGQKPAFLHSRKQN--EKFYKELWN 157

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  + G+   E   +  + +     + I  + NS+GDI+ YIG  +D+T  KK  + I 
Sbjct: 158 ILIAK-GQWSGELWAKKKNKRLFPAFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIE 216

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV----LGIA 586
              + D LTG+PN+     RL T++   +  +     ++V +I  +   +      L   
Sbjct: 217 NFKYYDYLTGLPNKFLLTQRLQTLISRLSEVNKE---LIVFNIRVFDSNSKSSLLDLPPN 273

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             D +++    RI          +R+  + F +I   +N    +A  A  M + ++ P  
Sbjct: 274 TRDKIILEAVNRIDRTTPKKMFFSRIGLSEFIVIYFIKNKIEVMASIAQRMIEKLSYPYY 333

Query: 647 LLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--- 702
           +  + I +   IG  ++  +   ++ ++++ +E+A + A  RG N  E F          
Sbjct: 334 VHHQTIILQTIIGLTAYYKNSSFSAEDLIQQSEIARHKAHIRGVNIFEFFDPQVEERIIE 393

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  +  A++ +EL + Y PI+ L   ++VGLEAL++W HP+ G +   +F+    
Sbjct: 394 FNKRVES-VSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLN 452

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT- 821
              +   I  ++L ++               I I +N+++  L      + +   +++  
Sbjct: 453 NHPLSLQIGDWVLHQVLHQAEELLA--CNIKIPINVNVSAYQLQHPNFVKKLFDTLARYP 510

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L   E+  + +      ++   +  GI+ +LDDFGT  + L++L  +    V
Sbjct: 511 NVPHRLLMLEILETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLTFLKELSTSEV 570

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       K +AIL+ II   K I  T+IA+ +      K L  +GC  IQ   
Sbjct: 571 KIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYA 630

Query: 940 VASPLGFNSILKLLKE 955
           +A P+    ++  +K 
Sbjct: 631 IAKPIPPAKLITWIKN 646


>gi|126738128|ref|ZP_01753849.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Roseobacter sp. SK209-2-6]
 gi|126720625|gb|EBA17330.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain-like [Roseobacter sp. SK209-2-6]
          Length = 685

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 113/438 (25%), Positives = 201/438 (45%), Gaps = 17/438 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++          D LTG+PNR+ F D L    + + +D  L   +  ID+D +K +ND +
Sbjct: 238 EAEAKEKFLLSHDTLTGLPNRKLFNDHLNEAFEGAQSD-TLNAAL--IDLDGFKGVNDTM 294

Query: 584 GIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +LV +  R+ + +      +ARL G+ F II  ++  S   +  A  + K + 
Sbjct: 295 GHAAGDALLVEVAARLSKCVETEKGFVARLGGDEFAIIWEAQQGSDDPSQLAEMILKEMK 354

Query: 643 MPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            P+   + EI    SIG A         +S++LK A+ A+Y AK RG +  + +      
Sbjct: 355 APLLFEQWEILPKCSIGIAELKKVKSELASDLLKAADAALYLAKERGKDTFQIYDKDLDN 414

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S      I   L  ++++ ++ +V  P + L D    G E L +W       IS  E++ 
Sbjct: 415 SINRQNTIAAGLRESIQDRQMRIVLQPKVCLHDGRFKGFETLSRWCL-NGEEISPEEYVN 473

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE    ++ ++L +LE  A+      +      + I +N+++       L E +Q ++ 
Sbjct: 474 IAENTGAVRDLDLSVLEEAAK-FSVALEAETDEAVPIAVNLSANSFRTGPLQEEIQDILW 532

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
            T  +P+R+ +  +E+  + N E     LG LR+IG    LDDFGT  S L+YL  + FD
Sbjct: 533 STGLAPNRLTVEITETAAIENWELVHKTLGHLRQIGTRTALDDFGTGYSSLAYLLRMKFD 592

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL---TRMGCDY 934
            +K +G  +        R+ +L+ I  M++++   ++ + I  +     L    R+    
Sbjct: 593 EIKIDGEFVKEIEFEYDRLQLLQHISAMSESLGMDLVIEGIETQEQANLLNFGKRL---V 649

Query: 935 IQDSHVASPLGFNSILKL 952
            Q    + P+   +    
Sbjct: 650 GQGYLFSKPMELENARSY 667


>gi|167617891|ref|ZP_02386522.1| EAL/GGDEF domain protein [Burkholderia thailandensis Bt4]
          Length = 705

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/607 (19%), Positives = 226/607 (37%), Gaps = 46/607 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + +  L  G     +     R   A++  GD V             P    ++G+ + 
Sbjct: 105 FRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAERLIGMLAD 164

Query: 444 SMHGPI--------RNWLPYIHINDR---------DNFRTILDSFVGYRRGRLQYEFRVR 486
              G          R        +D                 D+ +G        +  + 
Sbjct: 165 DCRGRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLY 224

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIG-----IANDITEQKKSLEGILCNAFQDNLTGI 541
            AD     +      ++  +G   R  G     +   +  +   +  +      D LTG+
Sbjct: 225 RADGGAIAVRATASSIAPPSGHARRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGL 284

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F  R+   L  +         ++ ID+D ++ +ND  G A GD +L +L  R+  
Sbjct: 285 PNRAEFERRVDFALAANVRGP---VALLFIDLDCFRIVNDTCGYAAGDAMLAALAARLVA 341

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGF 660
                D++ARL G+ F ++L    +    A  A  +R S+         +  +VTAS+G 
Sbjct: 342 CAASTDVVARLGGDEFCVLL-DAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGV 400

Query: 661 AS--WTSSKITSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLA 714
           A            + ++ A +A   AK RG N V+         +   + V     +  A
Sbjct: 401 ALLGAPDRVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQA 460

Query: 715 VENSELYLVYHPIIRLMDE------EIVGLEALIQW--DHPKWGNISSSEFMLIAEELCM 766
           +E  +  L   PI+    +           E L++      + G      F+  AE   +
Sbjct: 461 LECDDFCLYVQPIVDTATQGASRPPRARRGELLLRMGALGEREGVAPPGHFIRAAERYGL 520

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I+ +++  +   +   R +         IN++   + D    + +    ++T  +P+
Sbjct: 521 VTDIDRWVVRTVFDALARARSRRFSE---YAINLSGISIGDERFLDYVLEQFARTRVAPA 577

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I    +E+  + N   +   +  L+ +G    LDDFG+  + LSYL  +P + +K +GS
Sbjct: 578 LICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGS 637

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +TG      +  I+ SI  +   +    IA+ +     +++L  +G DY Q  ++  P+
Sbjct: 638 FVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPV 697

Query: 945 GFNSILK 951
            +    +
Sbjct: 698 PWREAAR 704


>gi|153802972|ref|ZP_01957558.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|124121495|gb|EAY40238.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 627

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 109/525 (20%), Positives = 224/525 (42%), Gaps = 17/525 (3%)

Query: 438 LGLASGSMHGPI---RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
           L   +G + G +          H  D+   +T  +S     +   Q E  ++   +    
Sbjct: 111 LQWPNGELFGSLCVTDRQARPFHSTDQQLIKTFAESIEAQLKTLYQRETLLQMNQDLHFK 170

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +  +++ +++ N  +        +I +++ + + I      D  TG  NR +   +L   
Sbjct: 171 VRHKMQSIASLNQSL------HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--A 222

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           + L+   ++    V+ I     +++   LG  + DDVL  L  R+G + +   + AR + 
Sbjct: 223 MQLAQLAEHEELAVIHIGFANARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNS 282

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               +IL +     ++      +  +           + +   IG A    +     ++L
Sbjct: 283 TNLTLILKAHPLDTQLNQLCHRLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLL 341

Query: 675 KNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           ++A  +M   K  G      S  ++   + +  ++  L  AV N++L L + P + +  +
Sbjct: 342 RHAVSSMLACKDSGYKVFFHSPALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQ 401

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             VG EAL++W HP  G  S+   + +AE+  +I  +  F+L +  +    W      P 
Sbjct: 402 RWVGAEALLRWKHPVLGEFSNETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PT 459

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I IN++S  L ++   E ++ L++   +   +++L  +ES ++ +   +  +L RL  
Sbjct: 460 FCIAINVSSVQLKNSGFVEQIRDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHT 519

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G++L+LDDFGT  +   YL   PFD +K + S M     +E    I+RS++ +AK +  
Sbjct: 520 LGVTLSLDDFGTGYASFQYLKKFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNL 579

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++ + I      + +   GCD  Q      P+        L+  
Sbjct: 580 NVVVEGIESTQQEQFILEQGCDVGQGFLYGKPMPSEVFTLKLESH 624


>gi|331667883|ref|ZP_08368740.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli TA271]
 gi|331064847|gb|EGI36749.1| heme-regulated cyclic di-GMP, cyclic AMP phosphodiesterase, (Direct
           oxygen sensor protein) (Ec DOS) [Escherichia coli TA271]
          Length = 418

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 105/409 (25%), Positives = 196/409 (47%), Gaps = 13/409 (3%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PNR +  + L  ++D +     + P V +I +D  + + D LG A  D  L+ +  R
Sbjct: 2   TGLPNRNNLHNYLDDLVDKA-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNR 56

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
             E LK    L R+ G +F  ++  EN+   I   A  +R  ++ PI + ++   +T SI
Sbjct: 57  FREKLKPDQYLCRIEGTQFV-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSI 115

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVE 716
           G +           +L  A  AM + +  GGN  + F  +     +  +     L  A+ 
Sbjct: 116 GISY--DVGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAIS 173

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N++L LVY P I     E+ G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++ 
Sbjct: 174 NNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIA 233

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  WR Q    P  + +N+++     N+L   +   +        ++ +  +ES+
Sbjct: 234 EACRQLAEWRSQNIHIPA-LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESM 292

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           +M +       +  LR +G+ L++DDFGT  S LS L  +P   +K + S +     ++ 
Sbjct: 293 MMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKR 352

Query: 897 --AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             A+L +I  + +++  T++A+ +  +   + L ++ C  IQ    + P
Sbjct: 353 ILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRP 401


>gi|297580185|ref|ZP_06942112.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|297535831|gb|EFH74665.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 627

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 195/444 (43%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+  + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLSPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKMFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAANDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|260769631|ref|ZP_05878564.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260614969|gb|EEX40155.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 589

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 106/497 (21%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQ---KKSLEGILCNAF----- 534
           +R+   +   ++I      + + +  I  +  +A  I      K   E            
Sbjct: 99  LRSKSGEVLGILISTFTTAVHDEDPVIEYHRILARIIVHSLRNKWLSERSESLVNQLSYE 158

Query: 535 --QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              DNLT + NR    D+L  +++ S+       T+  +DID +K IND+ G  +GD ++
Sbjct: 159 VSHDNLTNLMNRNYLSDKLERLVETSSE----PFTLAYLDIDNFKSINDLYGHYIGDQII 214

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   I + ++  ++  R++G+ F  I  S            A+   +          I
Sbjct: 215 KFVANSILQCVREENLTFRIAGDEFAFITFS----NDPLKICRAILDKLDQGYFDPSHRI 270

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM------ 706
            V  SIG A  +   IT+ +++ NA LA+   K    + +  +                 
Sbjct: 271 KVGLSIGIAKKSHEPITADQLILNASLALKDCKQSRSSQIRCYDTHLSSQYHRRTQVIDA 330

Query: 707 IKEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           ++ +L    + +SE+Y+V  PI+    +E    E L +W+    G +S  EF+  AE+  
Sbjct: 331 LRSELDKTTMADSEIYVVVQPIVHRRQKEWNYFEVLARWNSASLGFVSPMEFIDAAEQSG 390

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYS 824
           +I  +   ++E   +       Q     + + +N ++ +L ++      +   +++  + 
Sbjct: 391 LIIELGEKIVELACQAKADLERQFGY-KVKLGLNCSAHELTNSTRYLTHLMQTLNQYGFE 449

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P    +  +E+V++      + +L +LR++G ++ LDDFGT  S L+Y+   P D +K +
Sbjct: 450 PREFTIELTETVLLSQTTEVKYILDKLRELGFTVALDDFGTGYSSLNYIHSYPIDCIKID 509

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +      E    ++  II +AK +   +IA+ +  +  + +L  MGCD IQ    A 
Sbjct: 510 ATFIRNMLCNETAERVVWLIIQLAKQLNVDLIAEGVESQEALDKLYAMGCDQIQGYFFAK 569

Query: 943 P-LGFNSILKLLKERFP 958
           P      + + L  + P
Sbjct: 570 PETPVKIVQQWLALQQP 586


>gi|99082069|ref|YP_614223.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99038349|gb|ABF64961.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 582

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 120/583 (20%), Positives = 240/583 (41%), Gaps = 38/583 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           ++ +    +R + A+  S D    +D     VT       +  +    +       L  I
Sbjct: 4   ARQLNRMSQRVTAAMEASKDGFAIFDEENRLVTCNDRYRELSHVHPDKVV--PGMTLTEI 61

Query: 457 HINDRDNFRTILDSFVGYR----------RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +  ++   +L                       E ++  A +    ++ R+      +
Sbjct: 62  LADAVESGHYLLRGVSAKDYIQNYNQRIVNHGFCTETQLELAGD--RHIVSRVNETDFGD 119

Query: 507 GDILRYIGI--ANDITEQKKSLE-------GILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + R        +  EQ+++ +        +   +  D LT +PNR+     L      
Sbjct: 120 KVVTRICITDLVRNEREQRRAAQALRETKDRLELQSLSDPLTHLPNRRHLDREL------ 173

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S         ++ ID+D++KKIND+LG   GD VL  +   +    K  D+ AR+ G+ F
Sbjct: 174 SRRLQTEPVALVRIDLDRFKKINDILGHEAGDYVLCHVADVLRAHTKAGDVPARVGGDEF 233

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++  S     +    A  + +++  P+    +     AS G A     +IT+SE+L NA
Sbjct: 234 VVLCRSGTTLEQAQTLATRVLRAVLEPVVWGNKRCNFGASFGVAHGVPGEITASELLSNA 293

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + A+Y AK  G   VE F         +   + + L  A+E  E+   YH     +   +
Sbjct: 294 DAALYRAKASGRGAVEVFTSEMRAEVLEERALSDRLPYAIEAGEITPYYHTQHDALTWHL 353

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+E L +W+HP  G +    F+ IA++L +   ++  + +R   D+ S R +  +    
Sbjct: 354 AGVEVLARWEHPDRGVLPPDRFLGIAKQLGLEAELDGCIFDRAVADMRSLRAEGILVR-R 412

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKI 854
           +  N+++  ++     E ++A I               ES+   +  E     +  L+ +
Sbjct: 413 VAFNVSAARIMQPSFIETVRARI---PDQRESYAFEILESISCEDEGEALIFCIDALKDL 469

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETT 912
           G  + +DDFG+  + ++ +  I  D +K + +++   G +E+   ++ S++ +A  ++  
Sbjct: 470 GFQIDVDDFGSGHASINGVLNIEPDALKIDRNIIFPLGKSERAERMVASVVDLAHTLDVK 529

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           IIA+ +      K L  +GCD +Q  + + P  F  + K L+ 
Sbjct: 530 IIAEGVDTIEKAKTLGAIGCDILQGFYFSKPRSFAELKKNLER 572


>gi|217419543|ref|ZP_03451049.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
 gi|217396847|gb|EEC36863.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 576]
          Length = 787

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|167909535|ref|ZP_02496626.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 112]
          Length = 711

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 87  REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 146

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 147 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 206

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 207 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 266

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 267 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 323

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 324 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 382

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 383 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 442

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 443 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 502

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 503 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 559

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 560 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 619

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 620 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 679

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 680 AATLQKLAALGVDYAQGYYIGRPVP 704


>gi|294010343|ref|YP_003543803.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292673673|dbj|BAI95191.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 686

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/452 (30%), Positives = 226/452 (50%), Gaps = 20/452 (4%)

Query: 513 IGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT--VM 569
           +G+  D + E + +   +   AF D+LTG PNR  F   L    D S   DN      + 
Sbjct: 245 LGVLKDRVVEYEAAERELTRIAFVDHLTGAPNRSHFYRELG---DRSRRTDNAAFVRHLA 301

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILI-SENNS 627
            +DID + +IN+  G   GD VL  + RR+ +L L    I  R  G+ F +     E  +
Sbjct: 302 FLDIDGFHQINNAWGHDAGDHVLSEIARRLQDLALASEAIFCRYGGDEFLLGFEAQEVET 361

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++ + A A RK+++ PI+ L + + VTAS+G ++  +  +     +K+A+LA+Y AK  
Sbjct: 362 ERLQNLAEAARKAVSAPISYLAQTLRVTASVGLSADDADVV-IERSIKSADLALYRAKES 420

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G +    F         +R  ++  L  A+EN EL L Y P++ L  E IVG EAL++W 
Sbjct: 421 GRDRAVLFEQRFHEDVEERRALEVALRTAIENEELRLRYAPVVDLATENIVGFEALVRWH 480

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +P  G IS   F+ +AEE  +I+ I  ++L     D   W       PI + +NI+    
Sbjct: 481 NPDRGWISPVTFVPVAEECGLIRLIGDWVLRTACADATQWLR-----PIPVAVNISPLQ- 534

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D  L   +Q+++++T  SP R++L  +ES+ + +      L  ++  +GI L LDDFGT
Sbjct: 535 WDESLIGNLQSVLAETRLSPERLELEVTESIFLIDTAECFALAKQIDALGIGLVLDDFGT 594

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
             S LS LG  PF ++K + S +    G      AI+   + MA+ +E  I A+ I  E 
Sbjct: 595 GFSSLSCLGRTPFKSIKIDQSFIRSAVGGDAGSSAIIHGTVTMARALEIEITAEGIETEA 654

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           D+     +GC   Q  + A P+   ++ + + 
Sbjct: 655 DLLLAKELGCTRAQGFYFAKPMDAEAVRQAIS 686


>gi|254433979|ref|ZP_05047487.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
 gi|207090312|gb|EDZ67583.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
          Length = 565

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 191/452 (42%), Gaps = 19/452 (4%)

Query: 517 NDITEQKKSLEGILCNA-----------FQDNLTGIPNRQSFLDRLTTILDLSA-TDDNL 564
            + TE+   L      A             D LTG+PN+  F++ L   +  ++  +  +
Sbjct: 116 REFTERVSMLLRTRQLALTQRSHLAYLVNHDRLTGLPNQTLFMEHLIDSVRDASILNKQV 175

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             TV+ I + +       LG    + V+ + + R+  +L+   +LARL+   +G+I    
Sbjct: 176 YVTVVHIPLAR---TMRSLGHYGLERVVANCSTRLNAVLRDEVLLARLTTEEWGLIHRPG 232

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               ++ +    ++     PI +    I +   IG   +      ++  L+ A  A+   
Sbjct: 233 ETLSRVLEICRRIQLLADEPIPVRGEHIRLAPRIGVGIYPDDSSDANGTLECAMAALSED 292

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           K        S R+       +  +  L  A+E  E  L + P +    E+ VG+EAL++W
Sbjct: 293 KGP-APVFYSRRIQHEALRFIRTESKLYEALEKEEFELWFQPQVSFETEKPVGVEALVRW 351

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P        EF+ +A     I  I+ ++LE+    + +WRD        + +N+  +D
Sbjct: 352 RLPNGELAPPGEFLPVAASTGQILRIDRWVLEKACATMNAWRDDNIGLQ-RVSVNVTVED 410

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +   +  E ++  + +    P  ++L  +E+    +   +   L  LR  GIS+ +DDFG
Sbjct: 411 IDAPDFVEFIKRALDQYQLPPPSLELELTETTFFKSSPANLEKLNLLRSEGISVAVDDFG 470

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S L+YL  +P  T+K +   +    +     AI+ +I+ +AK  +   +A+ I  + 
Sbjct: 471 KGYSSLNYLHKLPITTLKIDKEFIENAINNPTSAAIVETIVWLAKKFKLETVAEGIETKA 530

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++ L  +G    Q    + P+    + + +K
Sbjct: 531 QVEFLRSLGVTTAQGFFYSQPIPEAELREWIK 562


>gi|237799313|ref|ZP_04587774.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022169|gb|EGI02226.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 392

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 189/378 (50%), Gaps = 6/378 (1%)

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GD +++ +  R+   L   D +ARL G+ F +++ ++    +    A  +  
Sbjct: 4   NDSLGHQAGDRLILQVVARLKNQLDAGDQIARLGGDEFALLIDTQATPARALQLAERITD 63

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +A P  +    + +  S+G A    S++ +  ++ +A +AM  AK   G     F    
Sbjct: 64  VLAEPYWIDGESLLLGCSLGIAHS-QSRLEADPLMWHAHIAMRQAKSIQGCTFHLFDERI 122

Query: 700 FRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            R+ R    ++ +L  A+   E+ L Y P + L    +VGLEAL++W H + G ++ SEF
Sbjct: 123 NRNARSLADLEGELRRALRRDEMELHYQPRLCLSSGRVVGLEALVRWRHQERGLLAPSEF 182

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++L   +  L
Sbjct: 183 VPLAEQSGLIVPLGYWVILRALRDMQTLREQ-GFAPLHMAINLSFRQFQDSQLLPTLSRL 241

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +       ++   +E+ +M   ++ R  +  LR++G+  +LDDFGT  S   +L  +P
Sbjct: 242 IEQHSVDARWLEFELTETAIMRRSDQVRQTMEALRRLGVRFSLDDFGTGYSSFMHLNSLP 301

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   ++     E+   ++ ++I +A N+   ++A+ +     ++ L   GCD +
Sbjct: 302 IALLKIDMGFVSQMETREENRKLVNAMINLAHNLNLEVVAEGVETVGQLELLRSFGCDQV 361

Query: 936 QDSHVASPLGFNSILKLL 953
           Q   ++ PL  + ++  L
Sbjct: 362 QGYLLSRPLPLDELMTYL 379


>gi|167835420|ref|ZP_02462303.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia thailandensis MSMB43]
          Length = 728

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/633 (18%), Positives = 230/633 (36%), Gaps = 47/633 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 92  REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIF 151

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--------------------HIND 460
                      P    ++G+ +    G        +                    +  D
Sbjct: 152 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSALRLSRTCGDAVGSAGSSGASDSFYSFD 211

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----I 515
                   D+ +G        +  +  AD     +      ++  +G   R  G     +
Sbjct: 212 ASGSAASADAPLGGLEDGGSCDATLYRADGGAIAVRATASSIAPPSGRAPRACGSGRVLV 271

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              +  +   +  +      D LTG+PNR  F   +      +         ++ +D+D 
Sbjct: 272 LKSLATEHDLVRRLAWQTTHDPLTGLPNRAEFERHVAFARAANVRRP---VALLFVDLDC 328

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           ++ +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  +     
Sbjct: 329 FRIVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDAGDEASAVCAAEH 388

Query: 636 AMRKSIAMPINLLEREITVTASIGFAS--WTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                         +  +VTAS+G A            + ++ A +A   AK RG N V+
Sbjct: 389 LRASVDGFVFVWDGQPFSVTASVGVALLGAPDRAPRVEDAVRLAGIACDVAKARGRNRVQ 448

Query: 694 SFRVSSFRSDRV----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQ 743
                                +  A+E  +  L   PII    +   GL      E L++
Sbjct: 449 LADPHDRALAHHISDVSWCARVRQALEYDDFCLYVQPIIDTATQGATGLPRANRGELLLR 508

Query: 744 W--DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
                 + G      F+  AE   ++  I+ +++  +   +   R +         IN++
Sbjct: 509 MGSLGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLS 565

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              + D    + +    ++T  +P+ I    +E+  + N   +   +  LR +G    LD
Sbjct: 566 GISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELRALGCRFALD 625

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFG+  + LSYL  +P + +K +GS +TG         I+ SI  +   +    IA+ + 
Sbjct: 626 DFGSGMASLSYLRQLPVEYLKIDGSFVTGIANDAARLDIVASINDIGHAMNCKTIAEYVD 685

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               +++L  +G DY Q  ++  P+ +    +L
Sbjct: 686 SAATLRKLAALGVDYAQGYYIGRPVPWREAPRL 718


>gi|237810828|ref|YP_002895279.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
 gi|237505811|gb|ACQ98129.1| eal/ggdef domain protein [Burkholderia pseudomallei MSHR346]
          Length = 787

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|325830261|ref|ZP_08163718.1| PAS domain S-box protein [Eggerthella sp. HGA1]
 gi|325487728|gb|EGC90166.1| PAS domain S-box protein [Eggerthella sp. HGA1]
          Length = 1272

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 185/426 (43%), Gaps = 14/426 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +  D L+G+ NR  F  R+  ++D      +    ++  DID++K  ND+ G + GD +L
Sbjct: 23  SEHDALSGLLNRSGFNVRVRALID---AHPDEAYVLVYGDIDRFKAYNDLFGTSAGDSLL 79

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   I   L      ARL  + F                A  M            ++ 
Sbjct: 80  ADIGEMIRRNLPSNAAAARLRADHFIGCFPRS------LFDADRMLAVFNDWFAAYRQDF 133

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKE 709
           T    +G  S    ++  + M   A LA+  AK         +    + +       +  
Sbjct: 134 TFFVRMGVYSIDDPELDVNLMCDRALLALRAAKSGSAGSRYVLYDETLRASLLKEQQLAG 193

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A++  +    + P        ++G E L +W HPK G +  +EF+ + E   +I  
Sbjct: 194 EMTTALDRGQFVPFFQPQYCYATGRMIGAEVLARWKHPKRGLLGPAEFIPVFERNGLISR 253

Query: 770 INLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + +M ++  R + +W D      +  + +N++  D+  ++LC  ++ L+ +    PS +
Sbjct: 254 FDYYMWDQACRCLRAWIDAHGRDAVPHLSVNLSRADIYRSDLCSYLKGLVERYDVPPSLL 313

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES  M +P++    +  LR+ G ++ +DDFG+  S L+ L  +P D +K +   +
Sbjct: 314 NLEITESAYMESPDQLVGAVMELRRAGFTVEMDDFGSGYSSLNTLKDVPVDVLKLDMGFL 373

Query: 889 T-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +   IL SI+ MA+ +   +IA+ +  +     L  +GC+Y+Q    + P+   
Sbjct: 374 DAHESTRGGLILASIVRMARWLNLPVIAEGVETQKQAAYLASIGCEYMQGYLFSRPVDRE 433

Query: 948 SILKLL 953
           +  ++L
Sbjct: 434 TFERML 439



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATILGLASGSMH 446
           ++LA     +    D  R +         +  +++      +  +   A ++G       
Sbjct: 577 YLLAEETTQEQALRD--RLAATRDTIPGGLAFYEVADRIRLLDFSDAAADMIGYTREEYQ 634

Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              + + L  +H  DR     +    +     R     RV   D +  W+ +    M   
Sbjct: 635 ARTLDDALAVVHPEDRARVEAVAAE-LDAGASRSSCTMRVLRGDGKVAWLHLSASTMY-R 692

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA 533
           +   L  + +  D+T +K++ + +   +
Sbjct: 693 DETALYVVAVLIDVTNEKENEQRLKAQS 720



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 11/200 (5%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATI- 437
            L+ + V+  V A     +      ER  L    +  + +D+D   D V          + 
Sbjct: 1081 LVLYAVVSDVTAELRDQRERSWQNERYRLLSEMTHKMSFDYDSDSDTVLLYMDRTGKGME 1140

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
              +    +          IH    D+ R +           +  E++       + W   
Sbjct: 1141 AQVIPHYLETLSETRGKIIHPGSMDDVRRMFQHARSGANE-VSAEYQADYFGKGYAWYRA 1199

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +    +  G +   +G+  +I ++          A  D  TG+ N  +  D + + L  
Sbjct: 1200 NLFVAHDVAG-VWHLVGLIENIDDEHDL----RFRAENDATTGLSNHTATQDLVASALAD 1254

Query: 558  SATDDNLRPTVMVIDIDKYK 577
            ++   +     + +DID +K
Sbjct: 1255 ASVRRHSVC--VALDIDDFK 1272



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 6/151 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIA 435
              L    V+  V       Q + +  E Q          +  +  D     +       
Sbjct: 694 ETALYVVAVLIDVTNEKENEQRLKAQSELQCRLSDSVPCGIVRYTVDDEPRVLFVNRTGC 753

Query: 436 TILGLASGSM--HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            I G A  +    G     +  IH +D +     + + +      + + +R   +D    
Sbjct: 754 EIFGYADFAAYRAGTAGGKIVPIHDDDDELHAKTV-AALKAGAAPIGFTYRFVRSDGSMG 812

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           W+        + +G  +       D++++++
Sbjct: 813 WIEGTSALERDIDGRTV-VQSAFLDVSDRQQ 842



 Score = 41.5 bits (96), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 2/112 (1%)

Query: 422  DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQ 480
            D           ++T+ G              P     +     +  +D         L 
Sbjct: 993  DGEVRLRYANDRLSTMFGDGLPGAPDNPDWDAPLELSEEVKRLDQRCVDQEFIADGNELD 1052

Query: 481  YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               R    + +   + I+ R     +G+++ Y  + +D+T + +        
Sbjct: 1053 VGLRAVRDNGEAIDVRIQGRVAREPDGELVLY-AVVSDVTAELRDQRERSWQ 1103


>gi|160876974|ref|YP_001556290.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160862496|gb|ABX51030.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|315269177|gb|ADT96030.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS678]
          Length = 739

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 225/519 (43%), Gaps = 22/519 (4%)

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +    +   +       L        G+   E  +++   Q  W+ +    +S     + 
Sbjct: 221 DLFDMVREEEHAMLTDTLHVVREGVLGQAWCELPLKSIH-QLAWLKLSFSQISGDKDTL- 278

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D++   V  
Sbjct: 279 --VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---HAHDDMPICVAF 333

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D+++ IN++ G   GD +L  +  R+ +L++  DI+ARL G+ FG IL+   N    
Sbjct: 334 LDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFG-ILMHYCNVDSA 392

Query: 631 ADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              A  +   +         R   V+ S+G A           ++  A+ A   AK +G 
Sbjct: 393 KQIAKRICTQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGR 452

Query: 690 NHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
           N    +  S  + +R+  +     D+  A+  ++  L +  I+ L  EE  + LE L++ 
Sbjct: 453 NGWHLYSASDPKMNRLYTEMMASVDIVGALALNQFELYFQSIVPLNREESGLHLEILLRM 512

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S + F+  AE   +   ++L++++ + +      D      + + +N+++  
Sbjct: 513 VQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQLDL-VSVNLSATS 571

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D E    ++  +        ++ +  +E+  +   +++  LL  LR +   L LDDFG
Sbjct: 572 LGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFG 631

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S  +YL  +  D VK +G  +    E     AI++SI  + +++   ++A+ +  + 
Sbjct: 632 AGFSSFAYLKRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQD 691

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK-----LLKER 956
             ++L  +G DY Q   +  P+    +        L++R
Sbjct: 692 IGRKLQTLGVDYAQGYAINKPIRLAELTSGLSRPWLEKR 730


>gi|53718245|ref|YP_107231.1| hypothetical protein BPSL0602 [Burkholderia pseudomallei K96243]
 gi|52208659|emb|CAH34595.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 787

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 115/624 (18%), Positives = 232/624 (37%), Gaps = 45/624 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTPTSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++      
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLR 459

Query: 638 RKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE-- 693
                       +  +VTAS+G A            + ++ A +A   AK RG N V+  
Sbjct: 460 ASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLA 519

Query: 694 --SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQWD 745
                  +     V     +  A+E  +  L   PI+    +   GL      E L++ D
Sbjct: 520 DPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMD 579

Query: 746 --HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
               + G      F+  AE   ++  I+ +++  +   +   R +         IN++  
Sbjct: 580 ALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGI 636

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDF
Sbjct: 637 SIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDF 696

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +   
Sbjct: 697 GSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSA 756

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +++L  +G DY Q  ++  P+ 
Sbjct: 757 ATLQKLAALGVDYAQGYYIGRPVP 780


>gi|117928947|ref|YP_873498.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117649410|gb|ABK53512.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 821

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 196/432 (45%), Gaps = 10/432 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E  +  A  D +TG+ N               +   +    + VI +D++ ++ND+L
Sbjct: 366 REAEERIRAAHTDPVTGLGNLLMLEKEFEM-----SRRSDQPLAIAVIGLDRFAEVNDIL 420

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    D +L S+  R+  +++  D++ RL G  + ++L   +        A    +S+  
Sbjct: 421 GAHPADLMLRSVAERLAGIVRRCDVVGRLHGAEYVLLLRELSGPEAAVAQAELAVRSLGG 480

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRS 702
            I     +I + A  G A       T +E+++ A LAMY A+      +  S  +     
Sbjct: 481 TITAEGLDIALDAHTGVACVPEDGTTLAEVVRRARLAMYKARAMDLAVYRYSSDLEPPAM 540

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +V +  DL  A+  ++  L Y P   L     V  EAL++W HP+ G IS ++F+ + E
Sbjct: 541 AQVQMLRDLRTALSENQFVLHYQPKFSLRTGLPVAAEALVRWQHPQEGLISPAQFVPLLE 600

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  ++L+   ++  SW       P+ + +N+++++LLD +L   +   +++  
Sbjct: 601 RCGLIGNLTRYVLDAAIQEGASWYRAG--LPLSVAVNLSARNLLDEDLPRFVLDTLARHG 658

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+    +E+ V      +  +L  LR  G+ L+LDDF T  S LS L     D +K
Sbjct: 659 LPADRLICEITETAVFSRSLTASTILDALRTAGVGLSLDDFCTGYSSLSLLRERTIDEIK 718

Query: 883 FNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S ++     R +  I+ ++I +A   +  + A+ I  +   + LT + CDY Q   +
Sbjct: 719 IDRSFVSDLGTGRRSTEIVTALIDLAHRCDIIVTAEGIETKEQQRLLTDLQCDYAQGFLL 778

Query: 941 ASPLGFNSILKL 952
           A P+      +L
Sbjct: 779 AKPMPAALARQL 790


>gi|260772968|ref|ZP_05881884.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260612107|gb|EEX37310.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 897

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 109/573 (19%), Positives = 229/573 (39%), Gaps = 26/573 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             ++    + +    ++      G    +      +  V  +P +  +LG     + G  
Sbjct: 342 AESSTQTQEKLQETLQKFDALYHGHTVGMILL-TDKIIVDVSPTLLMLLGFQREQLIGQP 400

Query: 450 RNWLPYIHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +   H      D F  +L        G+  +E  ++ ++       +    +++ + 
Sbjct: 401 IGSICGCHNTQCGSDQFYRLLSQ------GQHHFETAMKRSNGTEIICSVEAALLNDRD- 453

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                +    DI+EQK+    I      D ++G+ NR + +D    +L      ++   +
Sbjct: 454 -QTSIMLSVKDISEQKQQAALIQTLTHYDPVSGLLNRPTLVDNANQLLL-----NHPPVS 507

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +   + K+I  V G    D  +  L   +         + R+S      +++S ++ 
Sbjct: 508 ILYLYAARLKEIEAVYGHDYYDRAVQHLATTLKHTF-PDLSIGRVS--EHAFMVLSTDSQ 564

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++      +       I L + E  +       S +        + + A+ A  H +  
Sbjct: 565 DELIQKGNRILTIYRQKIVLEDIECDLGLKATLVSSSIGVKDFERLSRGADYAAIHHRSS 624

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
               + S   +      ++I  D+  A++  +    Y PI++    E+VG EAL +W HP
Sbjct: 625 VFVTMVSAEDTQRAETLLVIHRDIISALKEGQFMAYYQPIVKASSGELVGFEALARWQHP 684

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G +    F+ +AE+  +I  +   +L++  + I S     +   + I +NI+S     
Sbjct: 685 QLGLLFPEVFIPVAEQRKLIVELGEQILDKACQFIRSLPHHESHH-LSIHVNISSPHFHH 743

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           N L + ++ LI      P ++ L  +ES+++G  E     +  ++ +G+ L LDDFGT  
Sbjct: 744 NSLVDTLKRLIHHYQLHPRQLVLELTESILLGAEEDIIQRMQTIKALGVQLALDDFGTGY 803

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S  S L   P D VK + S +      +K   ++++II MA+ +  T +A+ +     ++
Sbjct: 804 SSFSSLCNFPLDIVKLDKSYIDRLEDNQKAQILIKNIIYMAQELGMTTVAEGVESADQLR 863

Query: 926 ELTRMGCDYIQDSHVASPLGFNS----ILKLLK 954
           +L     D IQ  +   P+         L LL+
Sbjct: 864 QLLVWDIDEIQGYYFYKPMTSEQAKGHFLTLLQ 896


>gi|257140264|ref|ZP_05588526.1| EAL/GGDEF domain-containing protein [Burkholderia thailandensis
           E264]
          Length = 705

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/607 (19%), Positives = 226/607 (37%), Gaps = 46/607 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F + +  L  G     +     R   A++  GD V             P    ++G+ + 
Sbjct: 105 FRIRRLALRLGEAEGALAMSEARARAALVAVGDGVIFTGRAGRVECLNPAAEQLIGMLAD 164

Query: 444 SMHGPI--------RNWLPYIHINDR---------DNFRTILDSFVGYRRGRLQYEFRVR 486
              G          R        +D                 D+ +G        +  + 
Sbjct: 165 DCRGRPLVSTLRLARAGAEAGGPSDVFDWSDACASSGSAASCDAPLGGLEDGGSCDATLY 224

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIG-----IANDITEQKKSLEGILCNAFQDNLTGI 541
            AD     +      ++  +G   R  G     +   +  +   +  +      D LTG+
Sbjct: 225 RADGGAIAVRATASSIAPPSGHARRACGSGRVLVLKSLAAEHDLVRRLARQTTHDPLTGL 284

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR  F  R+   L  +         ++ ID+D ++ +ND  G A GD +L +L  R+  
Sbjct: 285 PNRAEFERRVDFALAANVRGP---VALLFIDLDCFRIVNDTCGYAAGDAMLAALAARLVA 341

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGF 660
                D++ARL G+ F ++L    +    A  A  +R S+         +  +VTAS+G 
Sbjct: 342 CAASTDVVARLGGDEFCVLL-DAGDEASAACAAERLRASVDGFVFVWEGQPFSVTASVGV 400

Query: 661 AS--WTSSKITSSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLA 714
           A            + ++ A +A   AK RG N V+         +   + V     +  A
Sbjct: 401 ALLGAPDRVPRVEDAVRLAGIACDFAKARGRNRVQLADPHDHELAHHINDVSWCARVRQA 460

Query: 715 VENSELYLVYHPIIRLMDE------EIVGLEALIQW--DHPKWGNISSSEFMLIAEELCM 766
           +E  +  L   PI+    +           E L++      + G      F+  AE   +
Sbjct: 461 LECDDFCLYVQPIVDTATQGASRPPRARRGELLLRMGALGEREGVAPPGHFIRAAERYGL 520

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I+ +++  +   +   R +         IN++   + D    + +    ++T  +P+
Sbjct: 521 VTDIDRWVVRTVFDALARARSRRFSE---YAINLSGISIGDERFLDYVLEQFARTRVAPA 577

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I    +E+  + N   +   +  L+ +G    LDDFG+  + LSYL  +P + +K +GS
Sbjct: 578 LICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGS 637

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +TG      +  I+ SI  +   +    IA+ +     +++L  +G DY Q  ++  P+
Sbjct: 638 FVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPV 697

Query: 945 GFNSILK 951
            +    +
Sbjct: 698 PWREAAR 704


>gi|330973494|gb|EGH73560.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 630

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 128/487 (26%), Positives = 227/487 (46%), Gaps = 24/487 (4%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN--- 451
               + +  E+ + A   S D +   +I   R V      + + G ++  + G   +   
Sbjct: 154 AQVALEASEEKFAKAFHSSPDSITITEIDSGRYVEVNDGFSRLTGFSAQEVLGRTAHEVG 213

Query: 452 -WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            W   +    R++    L      +      E   R        + I +  ++ +N    
Sbjct: 214 IWTDTLQ---REHMLEELR----QKGRVHHREMDGRDKHGAPLVLDISVEFITLNN--TA 264

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +  A DI   K +   I   A+ D LTG+PNR   LDRL+  + L     NLR  ++ 
Sbjct: 265 CLLMNARDIGALKNAQAQIQHLAYHDPLTGLPNRALLLDRLSQQVSLLQ-HQNLRGALLF 323

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-- 628
           +D+D +K IND LG  VGD VL  +  R+   ++  D +ARL G+ F +++     S   
Sbjct: 324 LDLDHFKHINDSLGHPVGDSVLSIIAARLEASVRQEDTVARLGGDEFVVLICGLEGSQGE 383

Query: 629 ---KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++ + A  +R  +A P+ L    + VT SIG        +T +++LK A++A+Y AK
Sbjct: 384 VTRQVRELADNLRNLLAEPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAK 443

Query: 686 HRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N  + F VS  +  S R+ ++ DL LA+  +E +L +   +   +E I G EAL++
Sbjct: 444 DCGRNASQFFHVSMQQAVSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLR 503

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIA 801
           W HP++G ++  +F+ I EE  MI  +   +L    +       Q  +P     + +NI+
Sbjct: 504 WQHPEYGLLAPDQFVQILEESGMILEVGSHILNEACKTGGLLLRQGLIPENKFLMGVNIS 563

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +  L ++  E ++  ++      S +KL  +E +V+ N + + L +  L+ +G+S  +D
Sbjct: 564 PRQFLQHDFIERVERSLTLHQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMD 623

Query: 862 DFGTKCS 868
           DFGT  S
Sbjct: 624 DFGTGYS 630



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                   L+     + +    +R  LA+  +    WD DIVR+R+  +   A + G+ +
Sbjct: 13  TVQTASARLSLKDAERALQETRDRLELALDLAQMGTWDLDIVRNRLQASARAALLHGMPA 72

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +       +   +   +R   R I  + +   +  LQ  +R +  +     +  R R  
Sbjct: 73  RTFDESGGQFFGSLPAEERRRMRAIYAAALENGQDCLQVTYRFQLKNGTSRLLESRARIY 132

Query: 503 SNSNGDILRYIGIANDITEQK-----KSLEGILCNAFQ---DNLT 539
            +  G  +R  G   DIT+Q      ++ E     AF    D++T
Sbjct: 133 RDEQGQPVRLSGTLMDITQQCAQVALEASEEKFAKAFHSSPDSIT 177


>gi|310828978|ref|YP_003961335.1| hypothetical protein ELI_3413 [Eubacterium limosum KIST612]
 gi|308740712|gb|ADO38372.1| hypothetical protein ELI_3413 [Eubacterium limosum KIST612]
          Length = 858

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 200/430 (46%), Gaps = 14/430 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D +TG+ +++ F  ++  IL     + +++  ++  DI+ +K IND  G+  GD 
Sbjct: 133 HQIQYDRVTGVYSKEYFCQQVRDILF---RNPDVKYDILCSDIEDFKLINDTFGMDAGDR 189

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +     + L    I  RL+ ++F  +L    +      +A  M       IN    
Sbjct: 190 LLRQVAELCTQRLGDHGICGRLNADQFACLLEHRED------YADEMFTQSDSRINSGFG 243

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
           ++ V    G  +    +++  +M   A LA  + K + G H   +      +      I 
Sbjct: 244 DLNVIIKYGIYTVEDREVSVEQMCDRALLAANNIKGKYGKHFALYDDKLRGALLRRQAIT 303

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           + +  A+   +  +   P  ++ D  + G EAL++W+HPKWG    +EF+ I E    I 
Sbjct: 304 DGMETALATGQFEVYLQPKYQIRDGRLTGAEALVRWNHPKWGLQPPAEFIPIFERNGFIT 363

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ ++ ER+   +  W D++  P I I +N++  D+ +  L + +  L+ +   SPSR+
Sbjct: 364 KLDQYVWERVCSLMQEW-DKSGYPSINISVNVSRIDIYNTNLVDFLTGLMQRYGLSPSRL 422

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES       +    +G LR+ G  + +DDFG+  S L+ L  +P D +K +   +
Sbjct: 423 HLEITESAYTDTSRQLIETMGALRRQGFMIEMDDFGSGYSSLNMLTEMPIDVLKLDMKFI 482

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +      ILR I+ +A+ ++ +++A+ +  +  ++ L   GCDY Q  + A P+  
Sbjct: 483 QTEITRPTGQGILRFILDLARWMKLSVVAEGVETQEQLERLQNAGCDYAQGYYFAKPMPV 542

Query: 947 NSILKLLKER 956
            + + +L  +
Sbjct: 543 ENFVSILTAQ 552



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A +D +TG+ N +       ++   S++       V + ++D  KK N+  G   GD
Sbjct: 700 QDEACRDTMTGLLNCRGLYTITESLWHESSS------VVCLFELDDLKKFNEKYGYVEGD 753

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +++     +    +  D+L RL G+ F  ++ +  +        +A+ ++      +  
Sbjct: 754 HLILHFASLLRAHTQVDDVLVRLGGDEFLAVMYNIRSMKVAHMKEMAILRAYNESRYVDP 813

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
               V+   G   W + +    E++  A   +Y AK  G     
Sbjct: 814 DS--VSCFAGTVLWNAEEP-LDEIIGRAREILYAAKASGKEEYF 854


>gi|226196734|ref|ZP_03792314.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225931265|gb|EEH27272.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 787

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPSARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|325971294|ref|YP_004247485.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Spirochaeta sp. Buddy]
 gi|324026532|gb|ADY13291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Spirochaeta sp. Buddy]
          Length = 1480

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/578 (20%), Positives = 230/578 (39%), Gaps = 39/578 (6%)

Query: 403  DGERQSLAV--------LGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIR- 450
              ER  LA+          +   +  +    D +        +A  L    G++   +  
Sbjct: 916  SRERHLLALNQRMQNYVDQALQGIAVFQFKSDALQVQYINGTLAQFLDFERGTLLELLHG 975

Query: 451  NWLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGD 508
            N L   H  D       ++   +    G L+   R+   +    W  + +R +     G 
Sbjct: 976  NALLLFHPEDSSLLLRNVEQMCMSGHYGSLRL--RLITKNQTVFWSKVTVRQVGVVGCGQ 1033

Query: 509  ILRYIGIANDITE------QKKSLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATD 561
                +   +DI E      +K+     L  A   + LTG+  RQ F +    +LD    +
Sbjct: 1034 PFSLL--FDDINEIMDNQKEKEQTLNQLYYALGHNLLTGLYTRQRFYEETRALLDEQRNN 1091

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                  ++  +I+++  IN++LG   G+ VL    + +   +K   + A L  + F   L
Sbjct: 1092 ---AFVMVYWNIERFSIINELLGFETGNQVLQLFAKSLRNFIKDAGVYAHLESDHFAACL 1148

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              E   L        + K+I +         TVT   G  +     +  S++L  A  A 
Sbjct: 1149 PKEVCDLD------KLGKAIEVDAISQSIGYTVTVVFGLYAIEDRSMPVSQLLDRAHSAA 1202

Query: 682  YHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
               +H        +  +      +   +  ++  A+E  +      PI  +  E I+  E
Sbjct: 1203 KSTRHNYHKSYAFYNPAFRSDTFNEQDVLNEMHQALEAGQFTFYLQPIYDVQKEHIISAE 1262

Query: 740  ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            AL++W HPK G I+  +F+ + E    I  ++L++L+ I   + S         + I +N
Sbjct: 1263 ALVRWVHPKRGIIAPIQFIPVFERYGFITTLDLYLLDAICAFLASCL-TNGEAVVPISLN 1321

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++  DL + ++ + ++  + K       I L  +ES  + NP++   ++  L++ G  + 
Sbjct: 1322 LSRIDLSNRQIVQRIKNTVEKYHLDHHLIHLEVTESAYIDNPDQMCQVVKELQECGFIIL 1381

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917
            +DDFGT  S ++ L  +P D +K + S +       +   I+ S+I + KN++  +IA+ 
Sbjct: 1382 MDDFGTGYSSMNMLYSLPLDILKIDRSFIQALEGSIRSRHIIASLITLGKNLDFPVIAEG 1441

Query: 918  IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +        L  +GC+ IQ    + P+       LL  
Sbjct: 1442 VETTDQRDCLKDLGCNLIQGFLYSKPVAQTDFRHLLAR 1479



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 16/248 (6%)

Query: 466 TILDSFVGYRRGRLQYEFRVRAA---DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             L +F    R  L  E R++     +  + W+   +  +S S    + YI I  DI   
Sbjct: 324 QKLQAFFTSGRKELSIEARMQHPFYREKGYPWVRFNLS-ISTSTSQTIGYIAI-QDIDAD 381

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   + ++  + +D+LTG+ NR S  + +  IL     +        +IDID +K+IND 
Sbjct: 382 KIRQQLLIERSQRDSLTGLFNRISLEEMIQDILK----NQESLGGFYLIDIDSFKQINDT 437

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD VL  +   +        I+ RL G+ F   +            A ++  S  
Sbjct: 438 YGHERGDWVLKQIAEELQAHFPGETIIGRLGGDEFVAYVPDCQT----QSLAFSLGASFC 493

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               L   EI  T S+G        ++  ++ +NA+LA+Y AK  G N    +  S   +
Sbjct: 494 KKPTL---EIPCTCSVGLCMKEGEFLSFEQLYQNADLALYRAKELGKNQCVLYDPSMDAA 550

Query: 703 DRVMIKED 710
                   
Sbjct: 551 KTYSWTNH 558



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVG 473
           G  V++          +  +A +LG  S   H     + L  +H  DR    ++      
Sbjct: 23  GVGVYELGDTIRATYLSRGLAKLLGYTSAEFHTYTDLHLLNAVHPQDRKRISSLFSRIKK 82

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             R  +  EFR+   +  +  ++ R       +G    Y  +A+D +E  +
Sbjct: 83  SHRE-IDVEFRINTEEEHWIRLLGRFARF---HGQFPVYYFVASDTSEAHQ 129



 Score = 50.3 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLP--YI 456
           +     R   A   S   +W++ I ++RVTT     TILG     +   P+   L   YI
Sbjct: 134 LEQQNTRLQFAFSHSTLEMWEYHIAQERVTTLSR--TILGGHQPINTPNPVAYLLKQGYI 191

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +  +  +   +              +++  D  + ++      + ++ G     IG+ 
Sbjct: 192 HPSFEETLKQDFEDLNQGSAP--DSIVKIKDKDGMYRYLRYSYSFLKDNEGHRGSAIGVF 249

Query: 517 NDITEQKKSLEGIL 530
            D+ ++ ++   +L
Sbjct: 250 QDVHDEIETRLQVL 263



 Score = 40.7 bits (94), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 8/123 (6%)

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
               +V+ +D+    +     +   L +   ++      WL      D+  F   L   V
Sbjct: 817 SIPLLVFSFDVKPIFIFCNKQLQQKLEMDESTLKNNPFAWLD---EQDQTQFLQYLQGMV 873

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +G   + F  +   N++  +     P+      +   +    D++ ++  L      
Sbjct: 874 QKNQGSGSFVF--KDVQNRYFNLSCHFGPVYGKEQVVTVAV---QDVSRERHLLALNQRM 928

Query: 533 AFQ 535
              
Sbjct: 929 QNY 931


>gi|53724916|ref|YP_101879.1| EAL/GGDEF domain-containing protein [Burkholderia mallei ATCC
           23344]
 gi|52428339|gb|AAU48932.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 23344]
          Length = 806

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 231/625 (36%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 182 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 241

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 242 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 301

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D  +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 302 GSAASPDVPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 361

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 362 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 418

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 419 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 477

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 478 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 537

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 538 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 597

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 598 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 654

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 655 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 714

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 715 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 774

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 775 AATLQKLAALGVDYAQGYYIGRPVP 799


>gi|310826231|ref|YP_003958588.1| putative sensory box/GGDEF domain/EAL domain protein [Eubacterium
           limosum KIST612]
 gi|308737965|gb|ADO35625.1| putative sensory box/GGDEF domain/EAL domain protein [Eubacterium
           limosum KIST612]
          Length = 958

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/568 (20%), Positives = 238/568 (41%), Gaps = 28/568 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           ++++        GI  D     L      D ++ WD  +D    +P++ +  G     M 
Sbjct: 1   MENLFKNMDMDAGILYD-----LLSSICNDYLYIWDTHKDLFQVSPNMVSDFGFEESGMA 55

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              +  L  IH  D +  +                 +++  A   + W+  + R   N  
Sbjct: 56  HYRQTMLERIHPRDYERLKKHFAGLWHSGEESFSLNYQMLNASGSYIWVNDQGRVRRNPR 115

Query: 507 -GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G+ +  +G         KSLEG     + D++TG+ + +   +++ +ILD +     +R
Sbjct: 116 TGEPMVILGAM-------KSLEGCE---YTDDVTGLMHHRFCQEKIQSILDEA---PEIR 162

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +M++ ID++ KIN +   A GD VL +    + + L     L R  G++F +      
Sbjct: 163 FRLMLLGIDEFNKINTLNSRAFGDQVLKATAENLLQALPEEVNLYRYEGDQFLVAGAGAT 222

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               +  +    + ++     +  +    + S G  ++       S++ K A +A+  AK
Sbjct: 223 REEMLNIYRHVQQYALRS-HRVEGQPCRFSVSAGLVAYPEDGDNWSDLEKKAAIALKRAK 281

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEAL 741
             G N    F+ S    + D  ++   +  +VE       LV+ P+    +  I+G EAL
Sbjct: 282 LNGKNQCVEFKHSMLREQIDNQLLTNCMAESVEKDFEGFRLVFQPLCGARELTIIGAEAL 341

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           +++  P    IS  EF+ + E   +I  + L++LE+ A     W     +P   + +N++
Sbjct: 342 LRYRMPDGREISPVEFIPLLENSRLIIPVGLWVLEQAAAVCREWMK--WIPDFMMNVNVS 399

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L + + C+  +A++ +   +P  + L  +ES  M   +  R  L RLR + + L +D
Sbjct: 400 YIQLKETDFCQKAEAVLRRQGLAPENLVLELTESYFMKEDDNVRDALRRLRGLKLRLAMD 459

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L  +  D VK +   +     +      + S+I +  N    +  + + 
Sbjct: 460 DFGTGYSSLERLADLEVDIVKVDRFFVQSLHISRHNRDFIESVIRLCHNRRKKVCVEGVE 519

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            + + + +  M  D IQ  +++ P+  +
Sbjct: 520 TQEEWESIRLMNADTIQGFYISRPVEQD 547


>gi|317489440|ref|ZP_07947950.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911369|gb|EFV32968.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 1392

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 185/426 (43%), Gaps = 14/426 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +  D L+G+ NR  F  R+  ++D      +    ++  DID++K  ND+ G + GD +L
Sbjct: 25  SEHDALSGLLNRSGFNVRVRALID---AHPDEAYVLVYGDIDRFKAYNDLFGTSAGDSLL 81

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   I   L      ARL  + F                A  M            ++ 
Sbjct: 82  ADIGEMIRRNLPSNAAAARLRADHFIGCFPRS------LFDADRMLAVFNDWFAAYRQDF 135

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKE 709
           T    +G  S    ++  + M   A LA+  AK         +    + +       +  
Sbjct: 136 TFFVRMGVYSIDDPELDVNLMCDRALLALRAAKSGSAGSRYVLYDETLRASLLKEQQLAG 195

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A++  +    + P        ++G E L +W HPK G +  +EF+ + E   +I  
Sbjct: 196 EMTTALDRGQFVPFFQPQYCYATGRMIGAEVLARWKHPKRGLLGPAEFIPVFERNGLISR 255

Query: 770 INLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + +M ++  R + +W D      +  + +N++  D+  ++LC  ++ L+ +    PS +
Sbjct: 256 FDYYMWDQACRCLRAWIDAHGRDAVPHLSVNLSRADIYRSDLCSYLKGLVERYDVPPSLL 315

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES  M +P++    +  LR+ G ++ +DDFG+  S L+ L  +P D +K +   +
Sbjct: 316 NLEITESAYMESPDQLVGAVMELRRAGFTVEMDDFGSGYSSLNTLKDVPVDVLKLDMGFL 375

Query: 889 T-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +   IL SI+ MA+ +   +IA+ +  +     L  +GC+Y+Q    + P+   
Sbjct: 376 DAHESSRGGLILASIVRMARWLNLPVIAEGVETQKQAAYLASIGCEYMQGYLFSRPVDRE 435

Query: 948 SILKLL 953
           +  ++L
Sbjct: 436 TFERML 441



 Score =  146 bits (369), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 119/318 (37%), Gaps = 13/318 (4%)

Query: 381  LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV--TTTPDIATI- 437
            L+ + V+  V A     +      ER  L    +  + +D+D   D V          + 
Sbjct: 1083 LVLYAVVSDVTAELRDQRERSWQNERYRLLSEMTHKMSFDYDSDSDTVLLYMDRTGKGME 1142

Query: 438  LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
              +    +          IH    D+ R +           +  E++       + W   
Sbjct: 1143 AQVVPHYLETLSETRGKIIHPGSMDDVRRMFQHARSGANE-VSAEYQADYFGKGYAWYRA 1201

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +    +  G +   +G+  +I ++          A  D  TG+ N  +  D + + L  
Sbjct: 1202 NLFVAHDVAG-VWHLVGLIENIDDEHDL----RFRAENDATTGLSNHTATQDLVASALAD 1256

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            ++   +     + +DID +K++ND  G   GD +L  + + +    +  D+L R+ G+ F
Sbjct: 1257 ASVRRHSVC--VALDIDDFKQVNDTYGHIEGDTLLHEVGKVLRSSFRESDVLGRVGGDEF 1314

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++L +  +     D    +++ +A  + +  +   ++ S+G        +   ++   A
Sbjct: 1315 LLLLKNI-DLEVALDKLEQVKRQLAA-VKVGSQGKALSVSMGVYVPEDDDLAYRDVFVKA 1372

Query: 678  ELAMYHAKHRGGNHVESF 695
            + A+Y AK  G N +   
Sbjct: 1373 DEALYRAKRSGKNRICVH 1390



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATILGLASGSMH 446
           ++LA     +    D  R +         +  +++      +  +   A ++G       
Sbjct: 579 YLLAEETTQEQALRD--RLAATRDTIPGGLAFYEVADRIRLLDFSDAAADMIGYTREEYQ 636

Query: 447 G-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              + + L  +H  DR     +    +     R     RV   D +  W+ +    M   
Sbjct: 637 ARTLDDALAVVHPEDRARVEAVAAE-LDAGASRSSCTMRVLRGDGKVAWLHLSASTMY-R 694

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA 533
           +   L  + +  D+T +K++ + +   +
Sbjct: 695 DETALYVVAVLIDVTNEKENEQRLKAQS 722



 Score = 50.3 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 6/151 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIA 435
              L    V+  V       Q + +  E Q          +  +  D     +       
Sbjct: 696 ETALYVVAVLIDVTNEKENEQRLKAQSELQCRLSDSVPCGIVRYTVDDEPRVLFVNRTGC 755

Query: 436 TILGLASGSM--HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
            I G A  +    G     +  IH +D +     + + +      + + +R   +D    
Sbjct: 756 EIFGYADFAAYRAGTAGGKIVPIHDDDDELHAKTV-AALKAGAAPIGFTYRFVRSDGSMG 814

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           W+        + +G  +       D++++++
Sbjct: 815 WIEGTSALERDIDGRTV-VQSAFLDVSDRQQ 844



 Score = 40.7 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 2/112 (1%)

Query: 422  DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQ 480
            D           ++T+ G              P     +     +  +D         L 
Sbjct: 995  DGEVRLRYANDRLSTMFGDGLPGAPENPDWDAPLELSEEVKRLDQRCVDQGFIADGNELD 1054

Query: 481  YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               R    + +   + I+ R     +G+++ Y  + +D+T + +        
Sbjct: 1055 VGLRAVRDNGEAIDVRIQGRVAREPDGELVLY-AVVSDVTAELRDQRERSWQ 1105


>gi|332142048|ref|YP_004427786.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552070|gb|AEA98788.1| sensory box/GGDEF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 798

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 130/619 (21%), Positives = 258/619 (41%), Gaps = 43/619 (6%)

Query: 350 WFIGLWMAITKRLDNDIIQPALVGGL----VLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           +   L + +  +            G     V I  +   +++Q   +    +  I S+  
Sbjct: 202 YLTTLQLKVDGQPTKWFQVVLSDVGWGDDYVQIGAIQDISILQSTQSNLSVADKIVSE-- 259

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
                     + V   D V   +     +  +LG     +       +  +    R +  
Sbjct: 260 --------IKEGVLVCDAVGLIIKANQSLCDMLGTKVKHLISTH---INSVFPKARKH-- 306

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              D    Y    L+ E  +  ++ +   + + +      +G+   ++ I  D++E K S
Sbjct: 307 ---DPRPDYLIDGLRTELTIV-SEGRRFHLTMSVTSFELDDGE-TNFVAILTDVSELKSS 361

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   AF D LTG  NR      + T  +          +++ IDID++K IND  G 
Sbjct: 362 ESQLKYLAFTDALTGAGNRNLLNSIVETYNESCE-----PCSIIFIDIDEFKLINDTHGH 416

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            VGD++L +   R    L+  D + R  G+ F  ++ S      +      +  S+    
Sbjct: 417 EVGDEILRACASRFKAALRGDDTVIRFGGDEFV-VVTSTTCHKLLKKMTSRLSLSLKKIF 475

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
                +  +TASIG AS T   ++ +E+LKNA++AM+ AK  G N V +F          
Sbjct: 476 KTTSGDFQITASIGLASSTE-SMSPTELLKNADIAMFSAKQGGKNGVVTFSDDLSKNIEY 534

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ I++ L  A++N ++   + PII     E++ +EAL +W  P  G IS  +F+ IAE 
Sbjct: 535 RLFIQQGLKSAIQNKQITAYFQPIIDSK-GEVLAVEALARWHIPSHGPISPDKFIPIAER 593

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I L ML+ +   + +         +   +N+++  L ++ + E      +    
Sbjct: 594 TKHIHDIGLLMLDEVCFALKAL-SGWGFLNVKFNLNMSAVQLQNDGVVELFAERFAFHNI 652

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P RI +  +ES +     ++R +L +++ +G+ +++DDFGT  S +S L    +D +K 
Sbjct: 653 DPGRIVIEITESTL--QSAKARDVLIKIKALGVIVSIDDFGTGFSCISELADETYDAIKI 710

Query: 884 NGSLM------TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           + SL+      +   ++R  I+ +++ M   +      + +     +    ++G   +Q 
Sbjct: 711 DRSLLPGFPLQSEQEKRRALIIENVVSMCVKLGMPCTLEGLETIEQVSFAKKIGAKAMQG 770

Query: 938 SHVASPLGFNSILKLLKER 956
            +   P+    +++ L+  
Sbjct: 771 YYFTRPVNLVGLMEYLQAE 789


>gi|167901305|ref|ZP_02488510.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 712

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 88  REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 147

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 148 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 207

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 208 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 267

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 268 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 324

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 325 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 383

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 384 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 443

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 444 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 503

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 504 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 560

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 561 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 620

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 621 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 680

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 681 AATLQKLAALGVDYAQGYYIGRPVP 705


>gi|152999469|ref|YP_001365150.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151364087|gb|ABS07087.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 744

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 108/549 (19%), Positives = 227/549 (41%), Gaps = 42/549 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I    +  + +     G A   +               + + R  L+  +  R+ R++ +
Sbjct: 220 ISHQIIAASGEFEPYFGYALQQLE--------------QQHIRAQLELCLSRRQSRIEND 265

Query: 483 FRVR-----AADNQFHWMIIRIRPMSNSNGDILRYIGI-----ANDITEQKKSLEGILCN 532
           F         A   +   +   RP+  +  +++R   +      + ++     +  +   
Sbjct: 266 FTCLFFPDELAGADYSVYLATGRPLDITETELIRVFSMNICGGLHSVS----LMSQLDKI 321

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF+D L  IPN    +  L  +L     +   +  +++IDIDK+   N V G   G+++L
Sbjct: 322 AFEDPLVKIPNLNVLIRTLEGVLAEDIRE---KFNLLIIDIDKFSDFNRVFGSPQGNEML 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + E      ++ARL  ++F ++             A  + +    P    + +I
Sbjct: 379 KHVACCLREHFDACVLVARLKDDKFAVLGPKT------LVTADIISRLFIQPYQQGKSKI 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
           TV  S        +  T+ + +    +A+  AK  G     +++ ++  +      + + 
Sbjct: 433 TVNISTVTLPLELADGTAVDAITQVNMALKTAKKLGIRQHVTYQQANDDNVAYHFELLQA 492

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  ++  +++++   P + +   E+VG+EAL +W  P   N+   +F+ IAE   +I  +
Sbjct: 493 LQHSITCNDIHIALQPQVCIKTGEVVGVEALARWTLPNGQNVPPLDFIPIAEATGLITQL 552

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +  +  + + +  +      + + +N+++       + + ++  I+       +I++
Sbjct: 553 GEQLFVQSCQALCTLNEA-GYTNLCMGVNLSAMQFEQENIVDILKQHIADANMPLGQIEV 611

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ M N E  R  L  LR I I + +DDFGT  S L+YL  + FD +K + S +  
Sbjct: 612 EVTESIAMQNFETIRKQLNDLRSIDIRVAIDDFGTGFSSLAYLSKLTFDRIKIDKSFIDN 671

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            T      AI+ SII + +     +IA+ +  +   K L+  GC   Q    A P+    
Sbjct: 672 VTSDDGAAAIVDSIILLGQRFHMNVIAEGVETKEQAKWLSDRGCHDAQGYFYAKPMPLPE 731

Query: 949 ILKLLKERF 957
           +L  LK   
Sbjct: 732 LLTWLKNYQ 740


>gi|262401599|ref|ZP_06078165.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio sp. RC586]
 gi|262352016|gb|EEZ01146.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio sp. RC586]
          Length = 786

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/457 (26%), Positives = 206/457 (45%), Gaps = 22/457 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR  F  ++   L LS   D     V+ ID+D +K +
Sbjct: 326 TELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLKIAD 632
           ND  G  +GD +LVS    + +L            I ARLSG+ F I+L+      +  D
Sbjct: 384 NDKYGHQIGDSLLVSFASHLRQLCKNFEASHNAYSIAARLSGDEFAILLV---APKRFND 440

Query: 633 FAIAMRKSIAMPINLLER----EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            A  + + +  PI   +        +TASIG A++ +      ++L NA+ AMY AK+ G
Sbjct: 441 CANIIAQRVLAPIQNQDNSPLSHFPITASIGIATFPNDGDHIEKLLLNADTAMYQAKNAG 500

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +  +  +  +  +    I+  L L + + E  LVY P      + ++G E L++W  
Sbjct: 501 KNQIAYYSQALDQIVQRRNNIERALRLELFDQEFKLVYQPYFACSGKRLMGFEVLLRWQS 560

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
              G IS  EF+ IAE+  +  AI+ +++ +  R+    +      PI + IN++S +L 
Sbjct: 561 QLLGEISPEEFIPIAEQTGLFGAIDRWVITQAFREFTDLQAMF-NEPIQVSINLSSAELN 619

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L + +          P  I    +E+       +S  LL  L ++G  LT+DDFG+ 
Sbjct: 620 SLKLAQYIHQQAEHFGVPPRWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSG 677

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + ++ L   P   +KF+   +       +  ++R +I +  + E  + A+ I  E   +
Sbjct: 678 YTSITQLVQYPVQKIKFDRQFLDTLIATNKQNVIRPLIDLCHSQEMKVTAEGIESETMHQ 737

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            L    CDY+Q  +   P+    I + L       K+
Sbjct: 738 WLADYRCDYMQGFYFGHPMNLAGIHQWLNSSNQKKKS 774


>gi|320354399|ref|YP_004195738.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfobulbus propionicus DSM
           2032]
 gi|320122901|gb|ADW18447.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Desulfobulbus propionicus DSM
           2032]
          Length = 745

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 197/436 (45%), Gaps = 15/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + ++ +   AF D + G+PNR +F+ +L+  L       +    V +IDID + + ND+ 
Sbjct: 315 QLVDRLHDLAFVDTMLGLPNRTAFVQQLSARLGDRRHGAS---AVALIDIDHFAETNDMF 371

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L ++  R+ E L     +AR++G+ F ++        +       +      
Sbjct: 372 GHAYGDLLLAAIAARLREHLNTGHTIARVAGDTFALL------GDRRQINPERLIALFTP 425

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
           P  +      V+ S+GFA  +  +    E+LKNA +A+  AK +G    E++  +     
Sbjct: 426 PFTIEGVARPVSVSMGFAPIS-DETDGQEVLKNASIALKRAKSKGQGLAETYTPAIGQET 484

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            + + + + +  A  +   +LVY P I L   E+ GLEAL++W       +    F+ +A
Sbjct: 485 KEHMGLLQGIYHAFADQRFFLVYQPQINLFTNEVTGLEALLRWRTADGALVPPGRFIPVA 544

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  ++L          RD      + + +N++        + + +  ++  +
Sbjct: 545 ERSGLIVTLGEWVLRSALEAWKVIRDA-GYADLRMAVNVSLVQCKHPAMLDMLDHILVDS 603

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ ++L  +ESV +    +   LL  +++  I + +DDFGT  S LSYL  +P D +
Sbjct: 604 NADPAHLELEITESVAIMGMAQVVSLLKAIKERHIDVAIDDFGTGFSSLSYLDRLPVDRL 663

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    + R    I   I+ +   +  T++A+ +        L  +GC+  Q   
Sbjct: 664 KIDRSFVAPLDDSRTGARIAEMIVSLGHTLGITVLAEGVEDPEQAVILKNIGCNEAQGYL 723

Query: 940 VASPLGFNSILKLLKE 955
            A P+  N +L  L  
Sbjct: 724 YAKPMPLNELLVWLAN 739


>gi|217974837|ref|YP_002359588.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217499972|gb|ACK48165.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223]
          Length = 739

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 225/519 (43%), Gaps = 22/519 (4%)

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +    +   +       L        G+   E  +++   Q  W+ +    +S     + 
Sbjct: 221 DLFDMVREEEHAMLTDTLHVVREGVLGQAWCELPLKSIH-QLAWLKLSFSQISGDKDTL- 278

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D++   V  
Sbjct: 279 --VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---HAHDDMPICVAF 333

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D+++ IN++ G   GD +L  +  R+ +L++  DI+ARL G+ FG IL+   N    
Sbjct: 334 LDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFG-ILMHYCNVDSA 392

Query: 631 ADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              A  +   +         R   V+ S+G A           ++  A+ A   AK +G 
Sbjct: 393 KQIAKRICTQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGR 452

Query: 690 NHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
           N    +  S  + +R+  +     D+  A+  ++  L +  I+ L  EE  + LE L++ 
Sbjct: 453 NGWHLYSASDPKMNRLYTEMMASVDIVGALALNQFELYFQSIVPLNREESGLHLEILLRM 512

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S + F+  AE   +   ++L++++ + +      D      + + +N+++  
Sbjct: 513 VQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQLDL-VSVNLSATS 571

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D E    ++  +        ++ +  +E+  +   +++  LL  LR +   L LDDFG
Sbjct: 572 LGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFG 631

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S  +YL  +  D VK +G  +    E     AI++SI  + +++   ++A+ +  + 
Sbjct: 632 AGFSSFAYLKRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQD 691

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK-----LLKER 956
             ++L  +G DY Q   +  P+    +        L++R
Sbjct: 692 IGRKLQTLGVDYAQGYAINKPIRLAELQSGLSQPWLEKR 730


>gi|152990661|ref|YP_001356383.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151422522|dbj|BAF70026.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 704

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 220/463 (47%), Gaps = 16/463 (3%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   +   L    I  +I   + +L+ +   +  D+LT +PNR+ F + L   +    T 
Sbjct: 250 IRTDDEFSLIAEEINKNIMRLQSTLKSLDHISKHDSLTQLPNRKCFHEYLDKAMKDF-TQ 308

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            + +  +M+ID+D +K IND  G   GD +L  +  RI  +LK  D++ARL G+ FG+IL
Sbjct: 309 KSSQFAIMLIDLDNFKLINDNFGHPFGDKLLKIVASRIRNVLKKEDVIARLGGDEFGVIL 368

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +N + + + A  +   +  PI + +  + +TAS+G    T  KI + + L  A++AM
Sbjct: 369 RRIHNPIVVGNIANKIIDILQKPIKIDDTIVYITASLGIYIPTDKKIDAKKALSYADIAM 428

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N  + F  S F+  + +  ++ D+  A+E  E    + PI+ L  E I+G E
Sbjct: 429 YKAKKSGKNSYKFFDESMFQELQSLTILEHDIHEALERQEFVPFFQPIVELKTERILGFE 488

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++W   +   +  S F+ + E    I  +   ++E + + I   R +      FI IN
Sbjct: 489 TLLRWKKGE-EYLPPSHFIHVLESRGYIVEVTYQLIETVFQFISKNRFKG-----FITIN 542

Query: 800 IASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           ++     D +    +  +  +    SPS+I    +E+V   N    + L+  + K G   
Sbjct: 543 LSLLQFYDRKFLNFVHDIQKRYPDVSPSQIVFELTETVFAENISLIQELILLIEKEGYKF 602

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S L Y+     +T+K + S +      +K   +L  II M+K ++  ++ +
Sbjct: 603 ALDDFGTGYSSLLYIKNYNLNTIKVDQSFIQNIFVDQKLRKLLDVIISMSKTLDIPLVLE 662

Query: 917 DIYGEIDIKELTRMGCDY---IQDSHVASPLGFNSILKLLKER 956
            +  +  +  L R   +Y   IQ  +   PL    +  +++ R
Sbjct: 663 GVEDKKTVDYLKRYR-NYKIKIQGYYYFPPLPMEEVEAMIQTR 704


>gi|152966163|ref|YP_001361947.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Kineococcus
           radiotolerans SRS30216]
 gi|151360680|gb|ABS03683.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Kineococcus
           radiotolerans SRS30216]
          Length = 637

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 113/535 (21%), Positives = 220/535 (41%), Gaps = 52/535 (9%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           + FR+++   +  R          R       W    ++         + Y+ +A D  +
Sbjct: 106 EGFRSVIAVPLISRGRVWGVLDLYRREAGT--WGQQELQWAHLLAHVAVSYLVMAADRAQ 163

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++ + +      D LTG+PNR    DRL   L  +         V  ID+D++K +ND
Sbjct: 164 ALQAQQELAHAGTHDGLTGLPNRTLLFDRLEHALHAARRHQRT-VAVFFIDLDRFKAVND 222

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL------------K 629
            LG A GD VL ++  R+   L+  D LARL+G+ F ++      +              
Sbjct: 223 TLGHAAGDTVLATVATRMNASLRQEDTLARLAGDEFVLLCEDLPRASSGGPGDGGEVDRH 282

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +R+++A P+++   ++ V A+IG A       ++ ++L  A+ AMY AK    
Sbjct: 283 VHAVTSRLRRALARPVHVAGVDLMVGATIGVALSEEHP-SADDLLAAADEAMYRAKRDSR 341

Query: 690 NHVESFRVSS------------------------------FRSDRVMIKEDLCLAVENSE 719
                                                    +     ++  L  A+ + +
Sbjct: 342 VKQGIRDEQHGRGGVIGLTEVSRGSAGGGAGGSAGVAARSAQRPGRHLERQLAQALTHDQ 401

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L + Y PI       +  +EAL++W HP+ G + ++ F+ +A +  +I  I  ++++   
Sbjct: 402 LQVHYQPITEP-GGGVHAVEALLRWQHPQRGLLPAARFVDLAVDTGLIVEIGRWVIDETC 460

Query: 780 RDIISWRDQANMPPIFIL-INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             +  WR +      +   +N+++++L+D  L   +   +        ++ L   E    
Sbjct: 461 AQMSRWRRELRRGAPYSAYVNLSARELVDPALTTTLATALRTHDLHAQQLGLEVVEDSF- 519

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            NPE    +L      G  L++DDFGT  S LS L  +P    K + S + G     +R 
Sbjct: 520 SNPE-VLPVLQEQEHRGHPLSIDDFGTGYSSLSRLVELPVQMAKIDRSFIAGLGHDPRRR 578

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A++ +++ +A +++  +IA+ +       ++T  GC Y+Q  H   P    ++  
Sbjct: 579 ALVDAVVTVATSLDLQVIAEGVETAAQASQVTDAGCHYLQGFHCGHPQPAEALTA 633


>gi|126453370|ref|YP_001064923.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|242315171|ref|ZP_04814187.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
 gi|254187749|ref|ZP_04894261.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254296139|ref|ZP_04963596.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|126227012|gb|ABN90552.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106a]
 gi|157806178|gb|EDO83348.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 406e]
 gi|157935429|gb|EDO91099.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|242138410|gb|EES24812.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1106b]
          Length = 787

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|254196597|ref|ZP_04903021.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
 gi|169653340|gb|EDS86033.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei S13]
          Length = 787

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|78485121|ref|YP_391046.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78363407|gb|ABB41372.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 864

 Score =  368 bits (944), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 100/462 (21%), Positives = 194/462 (41%), Gaps = 25/462 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  IG    I    K  + +   A +D LT + N++ F + L   +  +         +
Sbjct: 404 LVNVIGSIKAIN---KFTKELEYYATRDPLTHLFNQRVFHELLAYEVTRAHAH-RYSFGL 459

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID D +K IND  G A GD+VL +    I ++L+  DI AR  G+ F +IL  E+   
Sbjct: 460 LMIDFDNFKLINDQYGHAFGDEVLQAFANAIQQVLREGDIFARYGGDEFCVILP-ESQMD 518

Query: 629 KIADFAIAMRKSIA--MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            +   +  +  + +    I      +T+T S+G + +        ++   A+  +Y  K 
Sbjct: 519 DVKSMSYKILNATSDLKMIEPKGSVVTMTCSVGVSLYPDHAKDKEDLFMVADNMLYRVKD 578

Query: 687 RGGNHVESFRVSSFRSDRVMIKED---LCLAVENSE-LYLVYHPIIRLMDEEIVGLEALI 742
            G N +                +    +  ++E  E +   Y PII +   EI   E L+
Sbjct: 579 NGKNSLSYPEEEDLVEVYKESNDQSLFIMHSLETGEPIEPHYQPIICMETGEIAVHELLM 638

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        IS+S F+  AE + ++  ++L ++++    +     +       + IN++ 
Sbjct: 639 RLRQ-NGELISASRFIETAEHMGLVNQMDLVLIDKALAQVQISDYRGL-----VFINLSP 692

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K ++ +E    ++ L  K      RI    +E   + N       +  LR  G    +DD
Sbjct: 693 KAIVASEFIAKIKGLTEKYEVHHERIVFEITERETVHNIALLEKFVRELRSEGFRFAIDD 752

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
           FG+  S   YL   P D +K  G  +   ++    +A + S + MA ++    IA+ I  
Sbjct: 753 FGSGFSSFQYLKRFPVDFIKIEGEFINNMSKNKIDLAFVESAVSMATSLGIKTIAEFIEN 812

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGF------NSILKLLKER 956
           +  +  + ++G DY Q   +A+P           ++ L+++ 
Sbjct: 813 KETLLLVKQLGIDYAQGFLLATPQPEFLNELNADLVSLIQQE 854


>gi|192292005|ref|YP_001992610.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285754|gb|ACF02135.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           TIE-1]
          Length = 656

 Score =  368 bits (944), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 192/429 (44%), Gaps = 11/429 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR  F D                   ++ D+D +K +ND  G   GD
Sbjct: 222 EQIARADPLTGLANRSHFRDAAADAC-----RSGQGVAFVLFDVDNFKIVNDTRGHDAGD 276

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            V+ ++   +       D+  RL G+ F ++L  ++ + +    A  +  ++  P+ +L 
Sbjct: 277 RVIAAVADLLRSSCGPHDLPVRLGGDEFIVVLKGDDVAARALSLARRLSGALTRPLQVLG 336

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
           + + +T SIG A+     I   ++   A+ A+Y AK  G   +  F         +   I
Sbjct: 337 QPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGRACIRLFDARMQEEFLLQRCI 396

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL+L + P + L   ++VG EAL++W HP  G I   + +  A  L + 
Sbjct: 397 DGDLPGALARGELHLEFQPQVVLATGQVVGFEALLRWRHPTAGLIPPPDIIHAAIRLQLS 456

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+ +     + +  D +  PP+ + +N++ ++L  +   + +  L  +    P R
Sbjct: 457 ARLLSFIGDAACDFLRAL-DASGAPPVNVAVNVSPRELTLHSPAKILMDLTQRHGIDPRR 515

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E  +  +P++    L R+   G  L +DDFG   S +S L  I  DT+K + S 
Sbjct: 516 VEIEITEEALF-DPKQCARELQRIEHYGFGLAIDDFGVGHSSISNLMSIALDTIKIDRSF 574

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G +  R    ++ +I  +A+ +   IIA+ +  + + + L  +GC Y Q      P+ 
Sbjct: 575 VHGVSANRQNQQLIAAITAVARPLGHRIIAEGVESQGEAETLRMLGCSYGQGWLYGRPMR 634

Query: 946 FNSILKLLK 954
               +  L 
Sbjct: 635 AADAVAWLA 643


>gi|167814254|ref|ZP_02445934.1| hypothetical protein Bpse9_03868 [Burkholderia pseudomallei 91]
          Length = 669

 Score =  368 bits (944), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 115/624 (18%), Positives = 232/624 (37%), Gaps = 45/624 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 45  REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 104

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 105 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTPTSASSGAFAASAGLDAPDSP 164

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 165 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 224

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 225 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 281

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++      
Sbjct: 282 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLR 341

Query: 638 RKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE-- 693
                       +  +VTAS+G A            + ++ A +A   AK RG N V+  
Sbjct: 342 ASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLA 401

Query: 694 --SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQWD 745
                  +     V     +  A+E  +  L   PI+    +   GL      E L++ D
Sbjct: 402 DPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMD 461

Query: 746 --HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
               + G      F+  AE   ++  I+ +++  +   +   R +         IN++  
Sbjct: 462 ALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGI 518

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDF
Sbjct: 519 SIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDF 578

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +   
Sbjct: 579 GSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSA 638

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +++L  +G DY Q  ++  P+ 
Sbjct: 639 ATLQKLAALGVDYAQGYYIGRPVP 662


>gi|162451983|ref|YP_001614350.1| sensory box/GGDEF family protein [Sorangium cellulosum 'So ce 56']
 gi|161162565|emb|CAN93870.1| sensory box/GGDEF family protein [Sorangium cellulosum 'So ce 56']
          Length = 705

 Score =  368 bits (944), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 163/434 (37%), Gaps = 12/434 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT + +R + +DR+   L+    + N    +  ID+D+++ +N   G   GDD+L 
Sbjct: 258 RYDALTRLLDRYAIIDRIEEALNDCRAN-NTPYALCYIDLDRFRLVNATCGHEAGDDLLQ 316

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+ E++   D   R+ G+ F ++L  +N               +       E+  +
Sbjct: 317 WVATRVHEIVGPKDAAGRIGGDEFVLLLADKNEREAERIARDLQICLLEFRFGWAEKTFS 376

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR---SDRVMIKED 710
           + ASIG    T     + ++L  A+ A   AK  G   ++ +            +     
Sbjct: 377 IGASIGLVVLTPHFERAVDVLGAADHACRIAKENGRGRLQVYLDDQQMTTSRRSMQWVAS 436

Query: 711 LCLAVENSELYLVYHPIIR------LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           L   +    L L    I                 E L++         S    +  AE+ 
Sbjct: 437 LQRHLAEGRLRLYSQGIHPLIKPGAAHTPRGAHFEVLVRQLGEDGRFYSPVGIIQAAEQS 496

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I+ ++  +  R I +    A        IN++   LL   L + +   + +    
Sbjct: 497 GLIHVIDRYVARQAFRLIGALPQHALRRLDTCSINLSGVSLLREGLLDFLVEQLHRAQVP 556

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS+I    +E+  + N       +  L  +G    +DDFG+  +   YL  +P D VK +
Sbjct: 557 PSKICFEITETAALANLGEVLWFMQELGAMGCRFAIDDFGSGHASYGYLESLPVDYVKID 616

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           G  +    +     AI+ S+  +   +    +A+ +  +     LT MG  Y Q  H   
Sbjct: 617 GMFVRDLKDNSLHRAIVESVHRIGDTLGIKTVAEQVENQEIADLLTSMGIHYAQGWHFDK 676

Query: 943 PLGFNSILKLLKER 956
           P     +   L+ +
Sbjct: 677 PQPLVDLCGSLRAQ 690


>gi|255654607|ref|ZP_05400016.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296449381|ref|ZP_06891162.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296880685|ref|ZP_06904638.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261727|gb|EFH08541.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296428303|gb|EFH14197.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 694

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 201/480 (41%), Gaps = 22/480 (4%)

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE-------GILCNAFQDNLTGI 541
           +     M +    +   +G  + Y+ I +D+T   K  E        +   AF D++TG 
Sbjct: 216 NGDIVHMQVVAECIDWEDGKPI-YLLIYSDVTTLVKQNEIIEKNNKELEKLAFIDSVTGG 274

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N   F      ++  S    +   T++ +++ K+K IND+ G   GD +L  +   I +
Sbjct: 275 MNHTKFNIIAKEVISQS---PSGTYTLIWLNMQKFKLINDLAGNIAGDKLLKYIYNCISK 331

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   +++ R+  ++F ++L  +     I     +M   I    +  + +  +  + G  
Sbjct: 332 HLHEGELVTRIFADKFILLLKDK--PEDITSRLNSMVTHINRFNDNADYKYILYFTAGAY 389

Query: 662 SWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSD---RVMIKEDLCLAVE 716
               + +  + +  +A +A    K     G  + +F     +        I+  +  A+E
Sbjct: 390 VIYDTSLDITNIQDSANVASKSIKNVENHGLCICNFYSKKDKEKLILEQSIENRMYEALE 449

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E  +   P + L  + I G EAL++W HP  G I  +EF+ + E    I  ++L++ E
Sbjct: 450 KREFQVYLQPKLELSTQTICGAEALVRWIHPVEGIIPPNEFIPLFETNGFIIQLDLYVFE 509

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            + + +  W D     PI I +N++      N   +    +  K       I++  +E++
Sbjct: 510 EVCKTLKKWIDDGLN-PINISVNMSRYHFSSNNFIKTYDKIAKKYDIPSHLIEIEITETI 568

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           V  + +    ++  + K G   ++DDFG+  S ++ L  I  DT+K + +          
Sbjct: 569 VFEDVKVFSEIINEIHKNGFKCSIDDFGSGYSSINMLKDIYVDTLKLDRAFFQSEHLDSQ 628

Query: 897 A---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               I+ SII +AK ++ T +A+ I        L  + CD +Q    + PL      KL+
Sbjct: 629 RERDIIVSIIELAKKLKMTTVAEGIETSFQKDFLQEINCDMLQGYVFSRPLPIKDFEKLM 688



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 11/103 (10%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIH---INDRDNFRTILDSFVGYRRGRLQYEF 483
            V        + G           N     +     D +     ++        +  Y  
Sbjct: 34  VVWANDRYYEMFGYTKEEYETLFHNQCDLFYKDNPEDWNELVEYVEKTFSTGAKKYDYVC 93

Query: 484 RVRAADNQFHWMI----IRIRPMSNSNGDILRYIGIANDITEQ 522
           R++  + +  W+     +    +   +G  + Y  +  DITEQ
Sbjct: 94  RMKHRNGKKLWIKLFGFLTGEVV---DGYPISY-SVMIDITEQ 132


>gi|239623824|ref|ZP_04666855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521855|gb|EEQ61721.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 734

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 104/439 (23%), Positives = 208/439 (47%), Gaps = 14/439 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +    ++     D LTG+ ++Q F  +   +L     + + +  ++  DI+ +K IND
Sbjct: 124 RLRETAAMINMIQYDRLTGLYSKQYFYQQAGEVLL---RNPDQQYDIICSDIENFKLIND 180

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           V G+  GD +L  +     E LK   I  RL+ ++F  ++    +     D  I     +
Sbjct: 181 VFGVKAGDSLLRGIGNAYAERLKGIGICGRLNSDQFACLVEHRGDYAD--DMFIEASALV 238

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SS 699
              +++      +    G  +     ++  ++   A LA    K + G +   +     +
Sbjct: 239 NGLLDIHN----IVMKWGIYNVEDRSVSIEQICDRALLAARSIKGQYGKYFAIYDDTLRN 294

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I + +  A+  ++  +   P  R+ DE +VG EAL++W+HP WG +S +EF+ 
Sbjct: 295 QLLREQAITDSMESALSQNQFLVYLQPKYRIKDEALVGAEALVRWNHPVWGFLSPAEFIP 354

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+   I  ++ F+ E+    +  W D+    PI + +N++  D+ + +L + +  +I 
Sbjct: 355 LFEKNGFITRLDRFVWEKACAVLHDW-DERGYYPISVSVNVSRADIYNEDLADTLVKIIE 413

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K   +PSR+ L  +ES    NP++    +  LR++G  + +DDFG+  S L+ L  +P D
Sbjct: 414 KYDLAPSRLHLEITESAYTENPKQIIDTVTILRELGFVIEMDDFGSGYSSLNMLNDMPID 473

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +    +  K   IL+ II +A+ +  +++A+ +  +  +  LT +GCDY+Q 
Sbjct: 474 ILKLDMKFIRSEMAKPKSQGILQFIINLARWMNLSVVAEGVETKAQLLRLTEIGCDYVQG 533

Query: 938 SHVASPLGFNSILKLLKER 956
            + A P+       LL + 
Sbjct: 534 YYFAKPMPCQEFEGLLDDY 552


>gi|254181817|ref|ZP_04888414.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
 gi|184212355|gb|EDU09398.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1655]
          Length = 775

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 151 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 210

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN------------------DRD 462
                      P    ++G+ +    G        +                     D  
Sbjct: 211 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAAPAGLDAPDSP 270

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 271 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 330

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 331 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 387

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 388 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 446

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 447 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 506

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 507 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 566

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 567 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 623

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 624 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 683

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 684 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 743

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 744 AATLQKLAALGVDYAQGYYIGRPVP 768


>gi|312134495|ref|YP_004001833.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Caldicellulosiruptor owensensis OL]
 gi|311774546|gb|ADQ04033.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Caldicellulosiruptor owensensis OL]
          Length = 615

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 213/437 (48%), Gaps = 11/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     I   AF D LT +PN+ S +  L   +      +     ++ +++   +K+N +
Sbjct: 177 KDYKSKIEFLAFFDELTKLPNKNSLIRWLNLRVSNV---EKGNIYLIFLELRNLEKLNVM 233

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  + D+++V ++R++ ++L   D L ++  +RF II         I+++   +   +A
Sbjct: 234 YGYDIVDELIVQISRKLEDILSKEDKLFKIGFDRFAIICK----IESISEYIKNLLAKLA 289

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +  N+    I V  +IG      +  +++ +L+  +LA+  +K +G N  E F+ S    
Sbjct: 290 VVYNINGNLIRVNYNIGATLIDDTNDSTTSILRKCDLALIKSKEKGLNEYEIFKPSLEVQ 349

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I+++L   ++ +E  L+Y PII L + +I GLE L++W + K   IS  EF+ I
Sbjct: 350 TLKEGIIEKELRNGIDLNEFILLYQPIINLCNGQIYGLEVLLRWHYLKSVYISPLEFIPI 409

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  +   +L++       +    N     I +NI+ +  +D E       ++  
Sbjct: 410 AEKCGLIVDLGKIVLKQSVESAKVFNSYFNEE-FVISVNISPRQFVDKEFITSTIEILEN 468

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 +++   +E V + N   +  ++ +L+  GI+  LDDFG   S L+YL  +P + 
Sbjct: 469 EKIKNLKLQFEITEKVAIENINYTIEVINQLKNYGITFALDDFGVDYSSLNYLRKLPIEA 528

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           VK + S +  +  E+   ++ +II + K +   I+ + +  E   K L ++GCDY+Q   
Sbjct: 529 VKIDKSFVQETENEETYFVVETIIRLCKKLGLKIVGEGVETENQYKILNQLGCDYVQGYF 588

Query: 940 VASPLGFNSILKLLKER 956
           ++ PL F  IL  L+ +
Sbjct: 589 ISKPLSFEEILIKLQNK 605


>gi|119469110|ref|ZP_01612094.1| putative HAMP domain/GGDEF domain/EAL domain protein
           [Alteromonadales bacterium TW-7]
 gi|119447362|gb|EAW28630.1| putative HAMP domain/GGDEF domain/EAL domain protein
           [Alteromonadales bacterium TW-7]
          Length = 771

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 208/449 (46%), Gaps = 17/449 (3%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + NDI ++    + I   A  D+LTG  NR + L+ L   L         + T++ IDI 
Sbjct: 331 MGNDINKR---EQQISFQARHDSLTGFYNRSAMLEVLDDELSEL-----TQYTLVAIDIK 382

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADF 633
             + IND LG  +GD+ + ++  RI E       I AR+ G+ F  +  S   S K    
Sbjct: 383 GLRHINDKLGPRIGDECIKTVACRISEFSDEFGGIHARIGGDEFLTVFPSSAVSEKKCGI 442

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +   +     + + +I +  S G   + S    S ++++   +A+ +A +   +   
Sbjct: 443 EG-LIARLQECYTIQKLKINLHFSTGVLQYPSQGTASDDLVRRVLIAVENAANNQNHIHY 501

Query: 694 SFRVSSFRS-DRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                     DR+++ ++L  A   ++ +L++ Y P + +  ++I  +E+LI+W      
Sbjct: 502 YQDGEDEAHLDRLIMLDELKQAISDDDGQLFMTYQPKLHMQTQKIDKVESLIRWQRKDGS 561

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            ++   F+ +AE   +I  +  +++  +   +  W+ +     +   IN++++D+     
Sbjct: 562 WVNPELFIDLAERSGLIVELTAWVINTVVAQVADWKSKGIE--LQAAINVSAQDIAFPGF 619

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A + K       I +  +E  ++ N E+    L  L++IG+ ++LDD+G   + L
Sbjct: 620 HAALVATLKKHNVDARLITIELTERDMIENEEKGIKALKDLKQIGVKISLDDYGVGQTSL 679

Query: 871 SYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P D +K +   +    +++K   I++S I +   +  +++A+ +  E  +  L 
Sbjct: 680 GRLKMLPIDELKLDKCFILKLDASQKDQFIVQSSITLGHQLGFSVVAEGVETEESLALLK 739

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERF 957
            M CD+ Q  +++ PL  + + + L+E +
Sbjct: 740 TMQCDHAQGYYLSRPLKADLLEQWLEEYY 768


>gi|3659615|gb|AAC61684.1| diguanylate cyclase [Gluconacetobacter xylinus]
          Length = 580

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 128/555 (23%), Positives = 236/555 (42%), Gaps = 30/555 (5%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGY 474
            IV   D+             I       + G   R      H  D   FR +  +  G 
Sbjct: 28  LIVAITDVRGVITYVNDRFCEISRYPREELLGATHRIVNSGYH--DASFFRQMYRTIRGG 85

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                +     RA D   +W+   I P  NS G +  Y+    +ITE   + + +   A 
Sbjct: 86  EI--WRGNICNRAKDGTLYWVATTIMPKHNSLGAVEGYVATRFEITELMNTRDRLKSLAA 143

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F + L T ++  + +      +++ D+D +K+IND+ G   GD VL  
Sbjct: 144 TDPLTGLFNRGGFNNVLQTAVEDKSQNITRDIMLVMFDLDGFKQINDIHGHHAGDVVLKV 203

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+  L+   D + RL G+ F +IL    +   ++     +   +  PI +    + V
Sbjct: 204 ISNRLLALVHPEDAVCRLGGDEFALILNHTLHKFPLSLMLEKLLAELEAPIEVGNTMVNV 263

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           + SIG     +S+ ++  + KNA++A+Y AK  GG+    F +       +R  I  D  
Sbjct: 264 SGSIGVTPI-ASQESAESLQKNADIALYAAKRAGGHQARMFDMTLHQHALERAQILNDAR 322

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             V   +  L Y PI+     +   +EAL++W HP+ G +++  F  +  +  + + ++ 
Sbjct: 323 EGVMKDQFELYYQPIMNFSTGKCDQIEALLRWHHPQRGLLAAESFRDVFLDAALAQVMSP 382

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +++    D+  W    +  P  + IN++  DLL+      ++A I +     +   L  
Sbjct: 383 RLVKSFQNDMRMWNTSLDAYP-NLTINLSRLDLLNIGFQNDLEAEIKRQGGKAADYVLEI 441

Query: 833 SESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV--------KF 883
           SESV+     +R    L  L ++G  LTLDDFG        L  +P   +        K 
Sbjct: 442 SESVLAGRRSDRVLQRLQELSELGFQLTLDDFG--------LATLPISVLRTISFTQAKI 493

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +  L+     + +   ++  +I +A     ++    +  +  ++ L  MG D IQ  +++
Sbjct: 494 SRKLVKDIETSPQARGVVAHLIGLAHAFGLSVTVSGVETKGQMEVLREMGADRIQGFYIS 553

Query: 942 SPLGFNSILKLLKER 956
            P+   +++  L E 
Sbjct: 554 PPISAANLV--LAEH 566


>gi|326390449|ref|ZP_08212007.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993567|gb|EGD52001.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 443

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 202/437 (46%), Gaps = 19/437 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + ++K+  +      + D LT +PNR    +          +  N +  V ++D D +  
Sbjct: 18  VLKRKELRDKKY---YYDYLTHLPNRYFLYEY--------YSSSNCQFVVALLDFDNFTY 66

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD VLV ++  + E++K    + R  G+ F ++     N  +       + 
Sbjct: 67  INDSYGHHFGDKVLVEISNMLIEIVKEKGKIFRFGGDEFVVLFH--CNLDEAISVIEDVI 124

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +       + ER+I  T S G            ++++ A+ AM+ AK  G +    F  +
Sbjct: 125 EKFNYIFKVEERDILTTVSAGIYVS-KIGEHMDDIIRKADAAMFEAKKLGKSKYVIFDKT 183

Query: 699 SFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     +  D+  A+ N+E YL++ PI  L +  I  +EAL +W + K+ NIS S 
Sbjct: 184 IEDKIIEKAEMMVDIKKAMLNNEFYLLFQPIYDLRENRIKEVEALARWRNNKYINISPSR 243

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +IK   +F++E + + I  WR++     + + IN++   L D+E       
Sbjct: 244 FVPVLEETGLIKEFGIFIIEDVFKQIRDWRNKGIE--LKVNINVSPLQLRDDEFFFKFDE 301

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI+K     + I + F+E+ ++   E+    +    + GI ++LDDFG   S L  +   
Sbjct: 302 LINKYNIPSNLIGIEFTETQILDIKEQKVNKIDEFLRRGIKISLDDFGVGYSSLINMVEF 361

Query: 877 PFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P  T+K + SL+    E +   +++ I+ ++K +   ++A+ +  E  +  L   GCD I
Sbjct: 362 PISTIKMDKSLIDRIDENKVKTLIKGILYISKEMNYEVVAEGVETEEQLSMLKEWGCDKI 421

Query: 936 QDSHVASPLGFNSILKL 952
           Q  +++ P   + I  +
Sbjct: 422 QGYYISRPKTPDEIEMM 438


>gi|121728951|ref|ZP_01681956.1| GGDEF family protein [Vibrio cholerae V52]
 gi|121628760|gb|EAX61225.1| GGDEF family protein [Vibrio cholerae V52]
          Length = 627

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|254260963|ref|ZP_04952017.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
 gi|254219652|gb|EET09036.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 1710a]
          Length = 775

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 114/624 (18%), Positives = 231/624 (37%), Gaps = 45/624 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 151 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 210

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 211 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 270

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 271 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 330

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 331 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 387

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++      
Sbjct: 388 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLR 447

Query: 638 RKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE-- 693
                       +  +VTAS+G A            + ++ A +A   AK RG N V+  
Sbjct: 448 ASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLA 507

Query: 694 --SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW- 744
                  +     V     +  A+E  +  L   PI+    +   GL      E L++  
Sbjct: 508 DPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMG 567

Query: 745 -DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
               + G      F+  AE   ++  I+ +++  +   +   R +         IN++  
Sbjct: 568 ALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGI 624

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDF
Sbjct: 625 SIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDF 684

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +   
Sbjct: 685 GSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSA 744

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +++L  +G DY Q  ++  P+ 
Sbjct: 745 ATLQKLAALGVDYAQGYYIGRPVP 768


>gi|126175397|ref|YP_001051546.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125998602|gb|ABN62677.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 497

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 200/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT+++         + T+++IDI +++ +ND+ G   GD +L   
Sbjct: 82  DKLTGLVNRVGLKRALTSMM------PLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 135

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +         ++      ++    +P ++    ++V 
Sbjct: 136 AERLNSLSLSPRLIARLNGDEFCLYYEQALTEEQLIHLRGRLQ----VPFSIKNTPVSVK 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG          +S+ML+  +LA+  A+H R      +      +   + I + L   
Sbjct: 192 LQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLRELRIIDSLPKG 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ +++Y+VY     +       +EAL++W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 252 LQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWA 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      WR       + + +N++++DL    L + + A ++     P  + +  +E
Sbjct: 312 LDQVLAQQAKWRAAGIQ--LCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITE 369

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+ L +DDFGT  S L+YL ++P + VK + + +    + 
Sbjct: 370 STLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLKDLEQD 429

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I      + L  MG D +Q  + A P+    + 
Sbjct: 430 KPSEYILEASINIAKKLGYEVTVEGIETPEIREILVDMGVDTLQGMYYAKPMRAAELE 487


>gi|153830485|ref|ZP_01983152.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148874018|gb|EDL72153.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 627

 Score =  367 bits (943), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|254292024|ref|ZP_04962802.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150422049|gb|EDN14018.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 627

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|294676177|ref|YP_003576792.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294474997|gb|ADE84385.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 610

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 196/437 (44%), Gaps = 16/437 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + E   S       A  D LTG  NR +F +RL   L+    D      V  +D+D +K 
Sbjct: 172 VAELAASEARAQHMASHDFLTGAANRMAFQNRLIERLEAGTND----LFVAFLDLDHFKH 227

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  G   GD+V+               ++ARL G+ FG++L    +          + 
Sbjct: 228 VNDTFGHDAGDEVIRMACAAFVSRAPAGTMVARLGGDEFGVLLTGM-DRETAVATCQGLL 286

Query: 639 KSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           ++ +   ++    + + AS G    +      ++++++ A+LA++ AK  GG  V  F  
Sbjct: 287 ETCSGDFSVFGNSVFIGASCGLVDGSCHPGCDAADLMRFADLALFAAKQDGGQTVRVFDK 346

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                   R  I+  L  A+ + EL + Y PI+     ++VG EAL++W+   +G +   
Sbjct: 347 QLDASQQFRQRIEAGLFYALASEELSIHYQPIVASDTLDVVGYEALLRWNSRDYGTVPPG 406

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            FM IAEE  +   +  +++ER+ RD   W      P +F  IN + +     +    + 
Sbjct: 407 VFMPIAEESPVTLLLGDWVVERVLRDARGW------PGLFTAINFSPRQFQRQDFVARLA 460

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A   +   +P+ I++  +E+ +  +  +SR ++  LR  G  + +DDFGT  S ++ L  
Sbjct: 461 AEARQNGLAPALIQIEVTETTLRAHARQSRKIVDELRAQGFRVAIDDFGTGASSIASLQD 520

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + S + G    R   AI+ ++  +A  +   I+A+ +        L ++GC 
Sbjct: 521 LAVDAIKIDRSFIEGMDRDRPSAAIVTALSHLAAGLGLEIVAEGVERISQRDVLRQLGCT 580

Query: 934 YIQDSHVASPLGFNSIL 950
           ++Q          + +L
Sbjct: 581 HLQGFLFGQGQAVDRLL 597


>gi|307609861|emb|CBW99384.1| hypothetical protein LPW_11611 [Legionella pneumophila 130b]
          Length = 780

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 116/556 (20%), Positives = 235/556 (42%), Gaps = 20/556 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +  + + +   D     + T      + G     + G    +L     N  + F   L +
Sbjct: 100 ISSAFEGIIITDPEGTIIETNNAFMKMTGYTEQEVIGQKPAFLHSRKQN--EKFYKELWN 157

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +  + G+   E   +  + +     + I  + NS+GDI+ YIG  +D+T  KK  + I 
Sbjct: 158 ILIAK-GQWSGELWAKKKNKRLFPAFLAISAVKNSDGDIINYIGYYHDLTLIKKQEQQIE 216

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV----LGIA 586
              + D LTG+PN+     RL T++   +  +     ++V +I  +   +      L   
Sbjct: 217 NFKYYDYLTGLPNKFLLTQRLQTLISRLSEVNKE---LIVFNIRVFDSNSKSSLLDLPPN 273

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             D +++    RI          +R+  + F +I   +N    ++  A  M + ++ P  
Sbjct: 274 TRDKIILEAVNRIDRTTPKKMFFSRIGLSEFIVIYFIKNKIEVMSSIAQRMIEKLSYPYY 333

Query: 647 LLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--- 702
           +  + I +   IG  ++  +   ++ ++++ +E+A + A  RG N  E F          
Sbjct: 334 VHHQTIILQTIIGLTAYYKNSSFSAEDLIQQSEIARHKAHIRGVNIFEFFDPQVEERIIE 393

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  +  A++  EL + Y PI+ L   ++VGLEAL++W HP+ G +   +F+    
Sbjct: 394 FNKRVES-VSKAMQLHELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLN 452

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT- 821
              +   I  ++L ++   +           I I +N+++  L      + +   +++  
Sbjct: 453 NHPLSLQIGDWVLHQVLHQVEELLA--CNIKIPINVNVSAYQLQHPNFVKKLFDTLARYP 510

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L   E+  + +      ++   +  GI+ +LDDFGT  + L++L  +    V
Sbjct: 511 NVPHRLLMLEILETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLTFLKELSTSEV 570

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       K +AIL+ II   K I  T+IA+ +      K L  +GC  IQ   
Sbjct: 571 KIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYA 630

Query: 940 VASPLGFNSILKLLKE 955
           +A P+    ++  +K 
Sbjct: 631 IAKPIPPAKLITWIKN 646


>gi|91791742|ref|YP_561393.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713744|gb|ABE53670.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 762

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 104/444 (23%), Positives = 208/444 (46%), Gaps = 18/444 (4%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  DI  ++K    +L  +  D+LTG+ NR S   +L      +   + L  +++++
Sbjct: 327 LVLMREDIEAREK---DLLFQSQHDDLTGLLNRFSVKRQL------AEQQECLSGSLILL 377

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DI +++ IND++G    D +LV   +R+ +L   P  +ARL G+ F +   S        
Sbjct: 378 DIKRFRHINDIIGFNNADRLLVLFAQRLTQLTPSPARIARLDGDAFLLHYPSPMEIE--- 434

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GN 690
                   S+  P ++   +I++    G  S  ++      +++  E+A+  A+      
Sbjct: 435 -LLHLALNSLEAPFSIDGSKISMEVRAGLVSIAANGYDIDILIRRGEIALNQARAEDVRI 493

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                         + I  DL L +++++LYLV+ P + L   +    EALI+W HP+ G
Sbjct: 494 LSYRQGSDEQYQRELKIIRDLPLGLKSNQLYLVFQPKVTLASNQCAAAEALIRWQHPELG 553

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I+  EF+ +AE    I  ++ +++    + + +W+ Q  +  + + IN+++ DL +  L
Sbjct: 554 FIAPDEFIRLAENSGNINMVSQWVVNESIKQLAAWQQQGII--LKLAINLSAHDLSNKAL 611

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   ++    +   + +  +E  VM +P+    +L   R IGIS+ +DDFGT  S L
Sbjct: 612 PSQIATQLNAQGLAYDALSIEVTEGAVMKDPDAVIAVLQDFRDIGISIAIDDFGTGHSSL 671

Query: 871 SYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL  +P D VK + S +      ++   I+ + I +   +  +++A+ +  +  ++ L 
Sbjct: 672 AYLKLLPVDEVKIDRSFVKDMFINKQDAMIVETSIQLIHGLGMSVVAEGVEEQETVELLK 731

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
            + CD IQ    + PL        
Sbjct: 732 AINCDIIQGYVFSKPLKNEDFSLW 755


>gi|167917550|ref|ZP_02504641.1| hypothetical protein BpseBC_03291 [Burkholderia pseudomallei
           BCC215]
          Length = 666

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 114/624 (18%), Positives = 231/624 (37%), Gaps = 45/624 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 42  REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 101

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 102 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 161

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 162 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 221

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 222 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 278

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++      
Sbjct: 279 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLR 338

Query: 638 RKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE-- 693
                       +  +VTAS+G A            + ++ A +A   AK RG N V+  
Sbjct: 339 ASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLA 398

Query: 694 --SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW- 744
                  +     V     +  A+E  +  L   PI+    +   GL      E L++  
Sbjct: 399 DPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMG 458

Query: 745 -DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
               + G      F+  AE   ++  I+ +++  +   +   R +         IN++  
Sbjct: 459 ALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGI 515

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDF
Sbjct: 516 SIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDF 575

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +   
Sbjct: 576 GSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSA 635

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +++L  +G DY Q  ++  P+ 
Sbjct: 636 ATLQKLAALGVDYAQGYYIGRPVP 659


>gi|134279458|ref|ZP_01766170.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
 gi|134248658|gb|EBA48740.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 305]
          Length = 787

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 232/625 (37%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 RESAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN------------------DRD 462
                      P    ++G+ +    G        +                     D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAAPAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D+ +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDAPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|229528345|ref|ZP_04417736.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229334707|gb|EEO00193.1| GGDEF family protein [Vibrio cholerae 12129(1)]
          Length = 627

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|315185361|gb|EFU19134.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta thermophila DSM 6578]
          Length = 706

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 123/598 (20%), Positives = 221/598 (36%), Gaps = 42/598 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I+  L   +  + +       S      G+ +   D     +   P    ++   S 
Sbjct: 114 AVTIELSLFRHHLHRELEIQRTWLSSLFSSIGEAIILLDEDGGILFLNPGAEELIDATSN 173

Query: 444 SMHGPIRNWLPYIHINDRDNFRT----ILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIR 498
              G         +  D D         L      R G + ++   +  +  +  ++   
Sbjct: 174 EAIGKPLVEFIRFY--DVDTGEEIPFLSLAQESRGREGGIIFDHIYLLTSTGERIFVQGT 231

Query: 499 IRPM--------SNSNGDIL----------------RYIGIANDITEQKKSLEGILCNAF 534
           I  +           +G                    ++ +  +ITE ++    +   + 
Sbjct: 232 ISNLTGGLQTGDRGGSGRTEDEEHPYPLPFPSVSSGGFVLVLRNITEVRRLSTIVRYQSV 291

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR   L  L   L  +  D     T   +DID++K +NDV G   GD +L  
Sbjct: 292 HDPLTGLLNRSQLLTSLQESLRQADPD-TPLDTFAFLDIDQFKVVNDVFGHIGGDVLLKE 350

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               + + L     +AR+  + FGIIL    +          +  S+       ++ + V
Sbjct: 351 TADLLRKKLPDESTIARIGDDEFGIILRGVKS-GDAERILRRLVTSLRRSFIWEDKTLPV 409

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR----VMIKED 710
           T SIG  + T        +L  A+ A   AK  GGN +  F             +     
Sbjct: 410 TVSIGAVAITPRHGDIYRVLAAADAACAVAKEEGGNRLRIFSPEDTDVQHRLGELHWIAR 469

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+    L L    II L        + ++     +   I   EF+ +AE   ++  I
Sbjct: 470 LQQAIREERLTLYAQDIIPLGAHNGFPKKEILVRLKEEDTLILPGEFIPVAERYNLMPLI 529

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + +++E + +   S  D          +N++S  LLD    +     + +T + PSR+ L
Sbjct: 530 DRWIIEAVLQYGTSTPDHR---DTVFAVNLSSATLLDEGFPDFFLRRLKETQFPPSRLCL 586

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + N  ++ L + R R++G S  LDDFG   S  +YL ++P D +K +GS +  
Sbjct: 587 EITETTAIRNFRKASLFIRRFREMGCSFALDDFGMGFSSFAYLKHLPVDFLKIDGSFVQT 646

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               E    +++SI  M K +    IA+ +      ++L  +  DY+Q   V  P   
Sbjct: 647 IVENEVDYQLVKSIHTMGKIMGKKTIAEFVSSREIYEKLATIPVDYVQGFFVGEPHPL 704


>gi|262190952|ref|ZP_06049165.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262033156|gb|EEY51681.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 627

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|288554526|ref|YP_003426461.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus pseudofirmus OF4]
 gi|288545686|gb|ADC49569.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Bacillus
           pseudofirmus OF4]
          Length = 557

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 222/463 (47%), Gaps = 27/463 (5%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+   +G I   +             E +  + F D+LTG+P+ +   ++L + +  +
Sbjct: 105 ITPIVEEDGFINYLL----------CFTEKLTHDDFFDSLTGLPSIKGLKEKLESKVKNA 154

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR-IGELLKFPDILARLSGNRF 617
               + +  V  + I+++++I D++G    D+  V +T R +  L      LAR++G+ +
Sbjct: 155 ---PDKQLAVCYLKINQFERIVDLIGHESMDEFTVEMTNRMLRVLQFEESGLARVAGDEY 211

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
              ++S+    +I   A  +++ +  P  + E  ++V + +G A   + ++    ++  +
Sbjct: 212 IFYVVSDK---EICQVAAEIQRQLQAPYLIDEMNLSVQSVMGIAYKRNEELPIEHLINQS 268

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEE 734
             AM+ AK +GG  +  F  +   ++ +    ++ +L  A+   EL L + PI+ +    
Sbjct: 269 YHAMFQAKQKGGQAITVFNFNKHTNEVMNKPILERELRKAISRKELTLYFQPIVHVETST 328

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W  PK G I    F+L+AE+   I+ I+ +++E+    +       N P  
Sbjct: 329 V-HFEALLRWFSPKLGTIPPDVFILVAEDRDFIQLIDEWVIEKACEFL----RSLNDPKA 383

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++ K L    +   +   IS+   S  +I+L  +E  ++ N +     L RL+++
Sbjct: 384 KVAVNLSPKTLAAPSIESRLIEGISEYGISAEQIELEITEHSLLKNEQAIIHKLSRLKEV 443

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETT 912
           G S+ +DDFG   + L+YL  +P D +K +   +     +     I+ SII +A+ +   
Sbjct: 444 GFSVAIDDFGVSNASLNYLRLLPVDKIKIDKVFIHNIENETKEYHIVHSIISLARKLGLR 503

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + A+ +      + L    CD +Q  + + P+  +S+ + +KE
Sbjct: 504 VTAEGVETSEQAEMLLESKCDELQGYYFSKPVDEHSLPEAVKE 546


>gi|119776247|ref|YP_928987.1| putative diguanylate phosphodiesterase [Shewanella amazonensis
           SB2B]
 gi|119768747|gb|ABM01318.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 768

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 199/438 (45%), Gaps = 18/438 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    LT +        +L  T++++DI  ++
Sbjct: 334 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQYLTDL------KQHLSGTIVLLDIKHFR 384

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +L+   RR+ +L    D+LARL G+ F ++     +        +  
Sbjct: 385 HINDIIGFANADALLLLFARRLEQLAPKADMLARLDGDSFLLLYRQSISHD----LLLKS 440

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++    G      +      +++ AE+A+  A             
Sbjct: 441 LDMLEAPFPIQGSNISLGVRAGLLEIDGNGADIDVLMRRAEIALNQACLQEQRIVSYRAG 500

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + +  DL + +   +LYLV+ P I L      G EALI+W HP  G I   E
Sbjct: 501 DDEKYQRELTLIRDLPIGLAQDQLYLVFQPKIDLRLNRCTGAEALIRWQHPTLGFIPPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  I+ ++L++  + +++W+ +     + + IN+++ DL D  L   +  
Sbjct: 561 FIQLAENSGNIDIISQWVLKQAIKQLVAWQQRG--VALKLAINLSAHDLSDTRLPNQIST 618

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L + R +G+S+ +DDFGT  S L+YL  +
Sbjct: 619 LLKDNHLPSGVLCIEVTEGAVMTDAQTVVGVLQQFRDMGVSVAIDDFGTGHSSLAYLKML 678

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D VK + S +           I+ + I +   +  +++A+ +  E  +  L ++ CD 
Sbjct: 679 PVDEVKIDRSFIQHIHSNSQDAMIVNTSIQLIHGLGFSVVAEGVEDEAGVDMLRKLNCDI 738

Query: 935 IQDSHVASPLGFNSILKL 952
           IQ    + PL      + 
Sbjct: 739 IQGYVFSKPLKAAEFDQW 756


>gi|153216463|ref|ZP_01950482.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124114265|gb|EAY33085.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 627

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLTEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-CDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PAFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|121599916|ref|YP_994167.1| EAL/GGDEF domain-containing protein [Burkholderia mallei SAVP1]
 gi|121228726|gb|ABM51244.1| EAL/GGDEF domain protein [Burkholderia mallei SAVP1]
          Length = 795

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 231/625 (36%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 171 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 230

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 231 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 290

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D  +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 291 GSAASPDVPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 350

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 351 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 407

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 408 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 466

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 467 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 526

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 527 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 586

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 587 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 643

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 644 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 703

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 704 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 763

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 764 AATLQKLAALGVDYAQGYYIGRPVP 788


>gi|83647691|ref|YP_436126.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83635734|gb|ABC31701.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 848

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/750 (16%), Positives = 254/750 (33%), Gaps = 53/750 (7%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPS---GELLIWRACSEIALSSSLII-FLFMYLHWN 276
              +A +    + +     S L+         +  W   S   +  + +I F ++     
Sbjct: 117 AALLAPLFGAGLGVAGQLSSGLITPSQAGATWITWWLGDSIGIMILTPLIRFWWIEPPSG 176

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYER 336
                      S +A       +       T     +                   G + 
Sbjct: 177 YRLVLRWLTQTSWVAMFFTAAFVIIPDKAWTLFFLLLPYVVYTSITL---------GKQG 227

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A L + A   + +      ++    +        +    V    L+ + V  +       
Sbjct: 228 ASLSLTALAALVLGEGAQGVSSDFMIS-------VKMAFVGTCTLLAYVVTANFETNRTI 280

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI------- 449
              + ++  R    ++   D V   D     +   P    + G +  +            
Sbjct: 281 RSMLATERNRLRTTLMSISDGVIKVDERAHVMFMNPMAEQLTGWSERAAMEKPFVVICPL 340

Query: 450 RNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
           +      H  +  + F     +    +     +E    A D      I   R +      
Sbjct: 341 KTLKEPRHPANPVEFFLA--QTQRDAQIESYAFE---SAEDGSRTLEIRIRRVVGGGGRG 395

Query: 509 IL---RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                  + +  DI+++ +    +   A  D LT +PNR++  + L  +L  S  D +L 
Sbjct: 396 DRLCNGAVIVLRDISDEVRLRRQLEHQALHDPLTDLPNRRALDNYLHRLL--SENDTHLV 453

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ ID+D++K IND  G  VGD +L  L+  + +      +LAR+SG+ F +++    
Sbjct: 454 SGLLYIDLDQFKLINDTCGHEVGDLLLKKLSSLLRKSTPERGMLARISGDEFALVIEGVT 513

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            +  +A      +      +   +   +V ASIG    T    +   +L  A++A Y AK
Sbjct: 514 EAQTLAVAEQVRQTISHYQLAYEDLVFSVGASIGVTFITDQDNSRHAVLSRADIACYQAK 573

Query: 686 HRGGNHVESFR----VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV----G 737
             G + V  +     V       +     L  A++     L    I  + +        G
Sbjct: 574 ESGRDRVRVYHAGDTVMMRYHGELEWLSQLKNAIQLGHFELYQQGIFCVDENGDAVDMPG 633

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E LI+        +S   F+ +AE    +  I+ ++ E + R +      +        
Sbjct: 634 CEVLIRLRRQD-EMVSPGSFIPVAERFGFMPIIDRWVTETLFRRMS----SSVGLEFIYN 688

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++     D+   + ++    K     SR+    +ESV + +  ++R ++  + + G  
Sbjct: 689 VNLSGATFNDHGFFKEVEGWAEKYRIDRSRVCFEVTESVALADIAQTREIIRSMAQKGYR 748

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
             LDDFG+  +   YL  +P + VK +G  +           ++ S++ +A+      IA
Sbjct: 749 FALDDFGSGSASYGYLSELPVNYVKLDGGFVRRVLEDPSAEIVIESLVKIARLRSMHCIA 808

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + +        + ++G   +Q      P  
Sbjct: 809 ECVESRDIACRMVKLGIPVLQGFFYDRPQP 838


>gi|229526697|ref|ZP_04416101.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229336855|gb|EEO01873.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 627

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|260775130|ref|ZP_05884028.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608831|gb|EEX34993.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 773

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 213/464 (45%), Gaps = 17/464 (3%)

Query: 503 SNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +S+ +I R      D+  E   S +     A  D+LT + NR  F   +   +      
Sbjct: 299 LSSDDEIGRLSVRFYDMYKELNSSYQKTKAMAENDHLTQLANRYQFQVYVERTIANKLLH 358

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSG 614
            +    ++ ID+D +K +ND  G  +GD +LV+    I E+    +       I +RLSG
Sbjct: 359 THAW--ILYIDLDNFKYVNDKYGHHLGDSLLVNFADHIREICHQYELSYGVKCIASRLSG 416

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I + S +++      A A+ + I  P +       +TASIG AS+       +++L
Sbjct: 417 DEFAIFIASAHDNNYPDKVAQAVLEPIQNPQSSPLGSFPITASIGVASYPQDGQDLAKLL 476

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+ AMY AK  G N V  +     +  R    I+  L     + E +L+Y P      
Sbjct: 477 SNADTAMYQAKRAGKNQVARYSEELDQIVRRRTQIERALRNGEFDDEFHLMYQPYFDRSG 536

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + IVG+EAL++W+ PK G ++  EF+ I+E+  +   I+ +++ +  +D ++ ++     
Sbjct: 537 KTIVGVEALLRWESPKMGKVNPGEFIPISEKTGLFGKIDRWVILQAFKDFVALQNCF-DH 595

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           PI + IN++S +L   +L   +Q   ++    P  +    +E+       +S  LL  L 
Sbjct: 596 PIQLSINLSSAELDSLQLARDIQHAANQYHVIPGLVDFEITETFATD--SQSYSLLHELS 653

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIET 911
            +G  L +DDFG+  + ++ L   P   +K +   +T         +++ ++ +  +   
Sbjct: 654 LMGFKLAIDDFGSGYTSITQLVEYPVQKIKLDREFLTALIKTNNQKVVKPLVDLCHSQSM 713

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            + A+ I  +   + L    CDY+Q   ++ P+  + + K L  
Sbjct: 714 IVTAEGIESQEMHQWLAENQCDYMQGYFLSPPVSLSEL-KFLDS 756


>gi|326390817|ref|ZP_08212370.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993211|gb|EGD51650.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 424

 Score =  367 bits (942), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 107/424 (25%), Positives = 198/424 (46%), Gaps = 16/424 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR    +          +  N +  V ++D D +  IND  G   GD VLV
Sbjct: 13  YYDYLTHLPNRYFLYEY--------YSSSNCQFVVALLDFDNFTYINDSYGHHFGDKVLV 64

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +++ + E++K    + RL G+ F ++     N  +       + +       + ER+I 
Sbjct: 65  EISKMLIEIVKEKGKIFRLGGDEFVVLFH--CNLDEAISVIENVIEKFNYVFKVEERDIL 122

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDL 711
            T S G            ++++ A+ AM+ AK  G +    F  +          +  D+
Sbjct: 123 TTVSAGIYVS-KVGEHMDDIIRKADAAMFEAKKLGKSKYVIFDKTIEDKIIEKAEMMVDI 181

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N+E YL++ PI  L +  I  +EAL +W + K+G+IS S F+ + EE  +IK   
Sbjct: 182 KKAMLNNEFYLLFQPIYDLRENRIREVEALARWRNDKYGDISPSRFVPVLEETGLIKEFG 241

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           +F++E + + I  WR++     + + IN++   L D+E       LISK     + I + 
Sbjct: 242 IFIIEDVFKQIKDWRNKGIE--LKVNINVSPLQLRDDEFFFKFDELISKYNIPSNLIGIE 299

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           F+E+ ++   E+    +    + GI ++LDDFG   S L  +   P  T+K + SL+   
Sbjct: 300 FTETQILDIKEQKVNKIDEFLRRGIKISLDDFGVGYSSLINMIEFPISTIKMDKSLIDRI 359

Query: 892 TEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            E +   +++ I+ ++K +   ++A+ +     +  L   GCD IQ  +++ P     I 
Sbjct: 360 DENKVKTLIKGILYISKEMNYEVVAEGVETGEQLSMLKEWGCDKIQGYYISRPKTSEEIE 419

Query: 951 KLLK 954
            + +
Sbjct: 420 LMFR 423


>gi|254177120|ref|ZP_04883777.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
 gi|254201987|ref|ZP_04908351.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|254207319|ref|ZP_04913670.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|147747881|gb|EDK54957.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei FMH]
 gi|147752861|gb|EDK59927.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei JHU]
 gi|160698161|gb|EDP88131.1| EAL/GGDEF domain protein [Burkholderia mallei ATCC 10399]
          Length = 787

 Score =  366 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 117/625 (18%), Positives = 231/625 (36%), Gaps = 47/625 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 163 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 222

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 223 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 282

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D  +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 283 GSAASPDVPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 342

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 343 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 399

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L    +       A  +
Sbjct: 400 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL-DARDEASAVSAAERL 458

Query: 638 RKSIAMP-INLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE- 693
           R S+         +  +VTAS+G A            + ++ A +A   AK RG N V+ 
Sbjct: 459 RASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQL 518

Query: 694 ---SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW 744
                   +     V     +  A+E  +  L   PI+    +   GL      E L++ 
Sbjct: 519 ADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRM 578

Query: 745 --DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                + G      F+  AE   ++  I+ +++  +   +   R +         IN++ 
Sbjct: 579 GALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSG 635

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDD
Sbjct: 636 ISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDD 695

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +  
Sbjct: 696 FGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDS 755

Query: 921 EIDIKELTRMGCDYIQDSHVASPLG 945
              +++L  +G DY Q  ++  P+ 
Sbjct: 756 AATLQKLAALGVDYAQGYYIGRPVP 780


>gi|300309883|ref|YP_003773975.1| GGDEF domain/EAL domain signal transduction protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072668|gb|ADJ62067.1| GGDEF domain/EAL domain signal transduction protein [Herbaspirillum
           seropedicae SmR1]
          Length = 650

 Score =  366 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 216/437 (49%), Gaps = 11/437 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +  L  A  D+LT IPNR+ F  +L  I   +      R  V ++D+D +K +ND+ G
Sbjct: 213 LSDENLQLANVDSLTQIPNRRKFFAQLNEICARAHGAQQ-RFAVAILDLDGFKAVNDLYG 271

Query: 585 IAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            + GD +L  + +R+    + P + LARL G+ F +I+  + +   + +    +  ++  
Sbjct: 272 HSHGDRLLEQVGQRLLTACRDPALHLARLGGDEFALIIDRDLSDAALQEIGQQLCHTLRR 331

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  + + AS+G A++      ++ + ++A+ A+Y  K      V  F        
Sbjct: 332 AFVLDKAVVQIAASVGVATFPDMAADAATLYEHADYALYQGKRERRGTVTLFSEHDKAQI 391

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R    I++ L LA    EL + + PI+RL D +++  EAL +W     G +S  EF+  A
Sbjct: 392 RRKSNIEQALRLADFERELSVFFQPIVRLDDGQVIAFEALARWHSTVKGAVSPVEFIPAA 451

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + +I  +++ +L +      SW  Q     I +  N+++ D+  +E    +  LI ++
Sbjct: 452 ERMGIINQLSVILLRKALAAAASWPAQ-----IRLSFNLSANDINSSEGMAEIIKLIRES 506

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            + PSR+ L  +E+ ++ + E++R L+  LR++G  +TLDDFGT  + LS+L  +P   +
Sbjct: 507 GFCPSRLDLEITETALLQDLEKTRQLIHSLRQLGCGITLDDFGTGYASLSHLHALPLTRI 566

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    +    + I++S++ +  +++   + + +     +  L  +G  Y Q   
Sbjct: 567 KIDKSFVADIGQDAVSLKIVKSLLALTLDMDLACVVEGLETPQHLAVLRELGAMYGQGYL 626

Query: 940 VASPLGFNSILKLLKER 956
            A P+  + +   L +R
Sbjct: 627 YARPMAADDVAPWLAQR 643


>gi|330973807|gb|EGH73873.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 534

 Score =  366 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 111/428 (25%), Positives = 205/428 (47%), Gaps = 13/428 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D L+G+ NR+ F ++L   L         +  V +ID+DK K IND  G A GD
Sbjct: 101 ESLARHDPLSGLLNRRVFHEQLVARL----QQPATQTAVFLIDLDKIKLINDTHGHAAGD 156

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             + ++   + +        +ARL G+ FG+ +  + +  ++A  A  +   IA   ++ 
Sbjct: 157 AAICAVAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAENILAKIAAS-SVG 215

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
              + ++A++G A           +L+ A+ AMY  K  G      + VS  R  R+   
Sbjct: 216 LPRVALSATLGIAIAPMDGSDPDLLLQRADSAMYRGKAGGRARFHFYEVSFERELRLQEQ 275

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +L LA+E  ++   Y PI+ L ++ + G E L +W HP+ G I   +F+ +AE+L +
Sbjct: 276 FARELTLAIEEKDIQPFYQPIVSLPEQHLAGFELLARWLHPERGIILPLDFIPVAEQLGL 335

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           IK +   +L +       W          + IN+ S  +   +  + ++ L ++  +  S
Sbjct: 336 IKPLTATLLLQAFDQARDWPS-----DFTLAINVTSLMIESPDFPDWLEQLANEGKFPLS 390

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+++  +E+ ++ N + +RL L RLR +G+S+ LDDFGT  S L +L  +  D ++ + S
Sbjct: 391 RLEVEVTENALVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTRLAIDKIEIDRS 450

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + E +  ++++I+ + K++   I A+ +  E     L    CD+ Q      PL  
Sbjct: 451 FFDTTLENQNEMVKAILALGKSLRMKITAEGVEHERLADWLATHECDFAQGYLFGRPLPL 510

Query: 947 NSILKLLK 954
             + +LL 
Sbjct: 511 AQVKELLA 518


>gi|262275970|ref|ZP_06053779.1| hypothetical protein VHA_002953 [Grimontia hollisae CIP 101886]
 gi|262219778|gb|EEY71094.1| hypothetical protein VHA_002953 [Grimontia hollisae CIP 101886]
          Length = 492

 Score =  366 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 126/456 (27%), Positives = 233/456 (51%), Gaps = 10/456 (2%)

Query: 512 YIGIANDITEQKKSLE-GILCNAFQDNLTGIPNRQSFLDRL-TTILDLSATDDNLRPTVM 569
             G+ +   E+    E     N   D LTG+ NR   L  +    +D  A+    R  ++
Sbjct: 37  IFGVVSQSMERIAFAEFQQRHNKSHDPLTGLSNRHFLLKTITRQAVDFEASQQ--RFAII 94

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +IDI+ +  IN+V G   GD +L   + R+ E +     LAR S NRF ++L +++ ++ 
Sbjct: 95  IIDINNFNNINEVFGHQKGDMLLAQFSTRLKEFVDEEIFLARSSDNRFTLVL-NDHETVN 153

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RG 688
           IA +   M+  +  P+ + + +I +T ++G A +      + ++LK AE+AMY+AK  + 
Sbjct: 154 IAQYIENMQDYLDHPLTINDHDINLTNTVGVALFPEHADNAEDILKRAEVAMYNAKRIQA 213

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              +    VSS   D   +   L  A++  +  L + P++ + +      EALI+W    
Sbjct: 214 PYAIYEPAVSSHFYDHTELATLLHSAMQTMDFELHFQPVLNIHNPHQTTFEALIRWPLGD 273

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             ++   +F+ IAE++  IK I  ++LE     +  WR Q+  P I   +N+++KD+ D+
Sbjct: 274 GYSVGPDDFIPIAEQINTIKHITHWVLETSVAQLAVWRSQSLTPHIQ--VNLSAKDIEDD 331

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L   +  L+ +   +P+++ L  +E+ +M N  ++R +L +++K+G+SL++DDFGT  S
Sbjct: 332 SLAAYLSKLLKRYAINPAQLTLEVTETSMMQNLVKTRRVLEKIKKLGVSLSIDDFGTGFS 391

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS L  +P D +K + S +T    +    AI+RS I +A +++  ++A+ +  E   + 
Sbjct: 392 SLSVLSNMPIDEIKIDRSFVTDLLYSSNHEAIVRSTIYLAHSLDCRVVAEGVETEALGQY 451

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           L  +GCD +Q      P+        L E F +   
Sbjct: 452 LISIGCDKLQGYWYGRPMNLAQTDAWLNETFLVNSR 487


>gi|167755547|ref|ZP_02427674.1| hypothetical protein CLORAM_01061 [Clostridium ramosum DSM 1402]
 gi|167704486|gb|EDS19065.1| hypothetical protein CLORAM_01061 [Clostridium ramosum DSM 1402]
          Length = 985

 Score =  366 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 205/442 (46%), Gaps = 21/442 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++         A  D LT I NR +F      ++     + ++   +   DID++K IND
Sbjct: 116 RRAEDNEYRIMADFDTLTKIYNRTAFYREAKKLIT---QNQDINYDLACFDIDRFKIIND 172

Query: 582 VLGIAVGDDVLVSLT----RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           + G +VGD++L+ +     +R+ +L     ++ RLSG+ F I++  + N   +      +
Sbjct: 173 IYGSSVGDELLIYIANTGVKRMKKL---GGLIGRLSGDLFAIVVPHQANIEDL------L 223

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +   I   +  I V  S G+ +     +  + M   A +A+   K +      ++  
Sbjct: 224 LQQMNEDIGNFDLGIKVVVSFGYYNIDDLSLPVNNMCDRAMMAIKKVKDKYNTSYATYDD 283

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +   I +++  A EN E    Y P   ++    +G EAL++W  P  G +  S
Sbjct: 284 ELRDQVLEEQRIIDEMDRAFENDEFIPYYQPKFNMVTRTYIGYEALMRWQSPTRGMVLPS 343

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E+   I   +  +  ++ +D++  R + ++  + + +N++  +L D EL   + 
Sbjct: 344 TFIPVFEKNGFISKADRVIWRKVCQDMVIARQKGHVL-LPVSVNVSRIELYDPELGNTIL 402

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++   S    +L  +E+  M +  +    + +L+++G ++ +DDFG+  S L+ L  
Sbjct: 403 KLLAEYELSIELFQLEITETAYMQDSNQMIEAVVKLKELGFTILMDDFGSGFSSLNILKE 462

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +PFD +K + + +    +   A  IL+S+I MAK +   +IA+ +  +     L  +GC+
Sbjct: 463 LPFDIIKIDLAFLEHFDKNNKAEKILKSVIQMAKRLNMEVIAEGVETKRQEDFLVELGCN 522

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q    A P   + I  +++ 
Sbjct: 523 RAQGYRFAKPASASKIAYMVEN 544



 Score = 46.5 bits (109), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 13/159 (8%)

Query: 407 QSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRD 462
              A+L     V+++D  RD   V  TP       LA   +   + N      +H  D  
Sbjct: 578 YRQALLELNAQVFEYDFKRDNMIVFDTPTKENGSNLAKMEIPNYLYNVSIGRIVHSKDVK 637

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++T+ +         +   F +      + W+    R + + +      IG++  I+++
Sbjct: 638 RYQTVFNG--NQEFKVIYRRFMINHGSG-YTWVKDTGRIIYDEDNKPKICIGVSRVISDE 694

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           K + + +   +  +  T       F   +  IL     D
Sbjct: 695 KLNEQMMNVLSVMEQSTD------FDSSINHILAEIGDD 727


>gi|126660384|ref|ZP_01731495.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
 gi|126618305|gb|EAZ89063.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Cyanothece sp. CCY0110]
          Length = 822

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 109/523 (20%), Positives = 226/523 (43%), Gaps = 13/523 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442
              I+++       + +F + E   + +   G+ V   +         P    + G    
Sbjct: 292 LGTIENITEQKLVERSLFEEKELAKVTLNSIGEAVITTNPQGIIEDFNPIAQQLTGFTIQ 351

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            +++ PI N L  I    + N   I       +    ++   +   + +   + I I  +
Sbjct: 352 EAIYQPIANILKLIDKTGKTNENLINKILQNSQNQPKRHTGILENKNGEKCEIDIVINLI 411

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              N  IL  + I  D+T+  +    +   A  DNLTG+ NR+    +L+  ++ S  ++
Sbjct: 412 RGQNNQILGTVLIFRDVTQASQLAHQLSWEASHDNLTGLANRRELEKQLSLAIE-SYKNE 470

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           ++   +  +D+D++K IND  G   GD++L  +T  +   ++  DILARL G+ F ++L 
Sbjct: 471 DVEHILCYLDLDQFKIINDTCGHVAGDELLKQVTNLLQTRVRSSDILARLGGDEFALLLK 530

Query: 623 SENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +  K    A  +R+ +            +V  SIG  S      T + ++  A+ A 
Sbjct: 531 GC-SLGKAKTIANNLRQLVKNFRFTWDNEIFSVGVSIGIVSINQEIQTITSVINAADSAC 589

Query: 682 YHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           Y AK RG N V  ++ S      +  +      L  A++ +  +L    I+ +   E V 
Sbjct: 590 YTAKSRGRNCVYVYKESDDEATKKIGQNQWIIRLNQALDENLFHLYSQKIVSIQSTEKVH 649

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII-SWRDQANMPPIFI 796
            E L++        +S   F   AE   +++ I+ +++    +    +++ Q+N+     
Sbjct: 650 HEVLLRLLDDSGNLVSPLAFFPSAERYNLMEEIDQWVISNFLKVYSEAYQKQSNLKKANF 709

Query: 797 L----INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
                IN+++  + +++LC  ++  +S    +P  +    +E+  + N  ++  L+  ++
Sbjct: 710 NHVHTINLSAISVKNDQLCNFIEEKLSYYNVNPKHLCFEITETTAITNLSQTIKLIEGIK 769

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
           ++G    +DDFG+  S LSYL  +P D +K +G+ +    +  
Sbjct: 770 QLGCYFAIDDFGSGMSSLSYLKNLPVDYLKIDGNFVKHLADDS 812



 Score = 53.0 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 9/140 (6%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRN 451
                Q +        L +     +++  D     +      A   G      +      
Sbjct: 163 RYQMEQELKEKTAFLQLVLDNIPQLIFWKDTNSVFLGCNRLWAKAAGYIEPEQVVSKTDY 222

Query: 452 WL------PYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +       ++     +   +R      +      L +  +    + Q  W      P+ 
Sbjct: 223 DIYHDPNNQHLDPPIQNLSYYRKQDLRVIETGEPELNFVEQKHNPEGQEVWYNTNKIPIK 282

Query: 504 NSNGDILRYIGIANDITEQK 523
           ++ G+I+  +G   +ITEQK
Sbjct: 283 DNEGNIVGILGTIENITEQK 302


>gi|294677611|ref|YP_003578226.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476431|gb|ADE85819.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 718

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 195/427 (45%), Gaps = 17/427 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LT +PNR +  + L ++        ++   V+ ID+ ++K+IND +G   GD  
Sbjct: 292 RARIDALTSLPNRFAMREHLDSL----RDSSDVDCAVLAIDLVRFKQINDTVGHLGGDAF 347

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI-ADFAIAMRKSIAMPINLLER 650
           LV    R+  +      LAR  G+ F ++  +  +  +I A+    + +    PI     
Sbjct: 348 LVEFAARLRAIADETAFLARYGGDEFFVVFSASRDLDRIVAEKCRQINRLSEQPILCNGV 407

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIK 708
              V +S G A      +   E+L+ A+ AMY AK R    V  +       D     I+
Sbjct: 408 SFEVLSSKGLAFEDRRGMEQEELLRRADRAMYSAKLRETLEVVRYDKRMESEDLDHKRIE 467

Query: 709 EDLCLAVENSE-LYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +L  A+   E L + Y PI+        +  EAL +W  P+ G ++   F+ +AE   +
Sbjct: 468 RELRRALAEGEGLEIHYQPIVPASLGAAPIRYEALARWTSPELGAVAPDRFIKVAEASGL 527

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +   +L+ +  D+             + INI+   L+     E   A++     +P 
Sbjct: 528 IMPLGWRLLDLVCADMRLMDQA------RVSINISPAQLMSRGFAEKFTAVVLSHGIAPW 581

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           RI++  +E +V+ +       L  L   G +L LDDFGT  + + YL  +PFD +K + S
Sbjct: 582 RIEVEVTEQIVVRDDATIEHELIALSHNGFTLALDDFGTGFASIGYLTQMPFDVLKIDRS 641

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    + +    ++RSI+ +A+ +E +I+A+ +  E +   L R+G D++Q  H   P 
Sbjct: 642 FVRSIEDGQQGMRMVRSIVGLARAMELSIVAEGVESEAEAVLLRRIGADFLQGYHFGRPA 701

Query: 945 GFNSILK 951
             ++ +K
Sbjct: 702 PVSAWIK 708


>gi|325972556|ref|YP_004248747.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta sp. Buddy]
 gi|324027794|gb|ADY14553.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta sp. Buddy]
          Length = 808

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 118/584 (20%), Positives = 230/584 (39%), Gaps = 23/584 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW---DWDIVRDRVTTTPDIATILGLASG 443
           +   ++    ++ + ++ ER    +L     +     +D     +  +     + G  S 
Sbjct: 233 LVQDISQRKKAEQLLAESERSKSVLLSHLPGLAYRTKYDRDWTVLYVSKGCKALTGYDSE 292

Query: 444 SMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           S+ G    ++   I    +++ R   D  +        YE+ +   D +  W+    +  
Sbjct: 293 SLLGNRDLSFNDLIVPCYQEDIRREWDRVLP-LHQMFTYEYEIITRDGKRKWVWENGQGF 351

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               G++    GI  DI+ +K   + ++ N   D  TG+ NRQ     L      +    
Sbjct: 352 YTKQGEVEELEGIILDISNRKNVEQELMYNNEHDIWTGLFNRQYLERLLR---LDAQLHP 408

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +L+  V+ ++I      N   G     +V+  ++  +  L     +L +    RF   + 
Sbjct: 409 SLKRAVLAVNISALHFANMTYGFQYTQEVVKKVSSALQVLTSEQCLLCKTHEYRFSFYIK 468

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAM 681
           + +    + DF   +   +   + +      +   IG       +     ++L+N  +A 
Sbjct: 469 NYHTKQDLIDFCKRISSLLESFLIIEG----INWGIGIVEIKKETAEDVEQLLRNLLVAS 524

Query: 682 YHAKHR--GGNHVESFRVSSFRSDRVMIK-----EDLCLAVENSELYLVYHPIIRLMDEE 734
             A  +  G      F  +         +       +     +  L+L Y PI+ L   +
Sbjct: 525 EKALQQLQGDICCCFFDAAMEEQLYQEEEITAELSRIASGEGSGSLFLNYQPILELATNK 584

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IVG EAL +   P  G IS  +F+ I E+  +I  +   ++ +  R + + ++      I
Sbjct: 585 IVGFEALARLQIPSLGLISPLQFIPITEKTKLIIPLGDSIILQALRFLNTLQNS-GYADI 643

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I INI++  LL ++    +  +IS     P  I L  +ESV   N +    +LG L+  
Sbjct: 644 GISINISAIQLLKHDFITHLLQMISSMQVDPQNICLEITESVFASNYQDINKVLGHLQSQ 703

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETT 912
           GI + +DDFGT  S L+    +  + +K +   +       +  AI   II +A  +   
Sbjct: 704 GIQIAIDDFGTGYSSLARERELNINCLKIDKFFIDKLMTLTEEEAITGDIISLAHKLGHC 763

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++A+ I  E  ++ L + GCD IQ    + PL   + L  LK +
Sbjct: 764 VVAEGIEHERQLQYLRKFGCDKIQGFLFSKPLDEQAALSFLKAQ 807



 Score = 68.1 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            +  +  P    I G  S  +      W    H +D +   T               E R
Sbjct: 145 NEVFSVNPRFEAITGRTSQEL--KAIGWAVITHPDDLEADLTQFKRLQAGEIQSYSLEKR 202

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               D  + W+ + +  +   +     +I +  DI+++KK+ +
Sbjct: 203 YIKPDGTYVWVSLVVAALKIQSDHSYSHICLVQDISQRKKAEQ 245


>gi|153827481|ref|ZP_01980148.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|149738591|gb|EDM52946.1| ggdef family protein [Vibrio cholerae MZO-2]
          Length = 627

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIIDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|77359421|ref|YP_338996.1| HAMP domain/GGDEF domain/EAL domain-containing protein
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874332|emb|CAI85553.1| putative HAMP domain/GGDEF domain/EAL domain protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 771

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 207/448 (46%), Gaps = 17/448 (3%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +DI ++    + I   A  D LTG  NR + L+ L   L+ S        T++ IDI 
Sbjct: 331 MGSDINKR---EQQISYQARHDTLTGFYNRSAMLEMLAKQLNKSTEH-----TLVAIDIK 382

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADF 633
             + IND LG  +GDD L ++ +RI E         AR+ G+ F  +        +    
Sbjct: 383 GLRHINDKLGPRIGDDCLKAVAKRISEFSDELGGFHARIGGDEFLTVFP-AGAVSEFKRG 441

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            IA+   +     +   +I +  S+G   +      + ++++   +A+  A     N   
Sbjct: 442 IIALMAQLQASYTIQNLKINLRFSVGVVQYPLHGEQAEDLIRRVLIAVDSATSHHQNIHY 501

Query: 694 SFRVSSFRS-DRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +       +R+++ ++L  A   ++ +L++ Y P + +  +++  +E+LI+W      
Sbjct: 502 YQQGEDEAHLERLVMLDELKQAISDDDGQLFMTYQPKLNMKIQKVDKVESLIRWQRKDGS 561

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+ +AE+  +I  +  +++  +   + +W+ +     +   IN++++D+     
Sbjct: 562 WVSPEVFIDLAEQSGLIVELTAWVVNTVIAQVAAWQQKGIH--LQAAINVSAQDIAFAGF 619

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   + K   +P+ I +  +E  ++ N E+  + L  L+ IG+ ++LDD+G   + L
Sbjct: 620 HSSLVRTLKKHKVNPALITIELTERDMIENEEKGIIALENLKAIGVKISLDDYGVGQTSL 679

Query: 871 SYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P D +K +   +     ++K   I++S I +   +  +++A+ +     +  L 
Sbjct: 680 GRLKMLPIDELKLDKCFILKLDESQKDQFIVQSSITLGHQLGFSVVAEGVETVGTLTLLK 739

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
           +M CD+ Q  +++ PL    + + L+E 
Sbjct: 740 QMQCDHAQGYYLSRPLKAELLEQWLEEY 767


>gi|294678524|ref|YP_003579139.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294477344|gb|ADE86732.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 838

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 239/585 (40%), Gaps = 28/585 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           A       +  + +R +  +          D     V   P+   ++G  +G++ G  R 
Sbjct: 255 AVSTLEGALARERDRLTTILDALPSGKIVLDAQDRIVLANPEACALMGCGTGAVCG--RA 312

Query: 452 WLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
               + I + R +    ++         ++          +   + + +  +    GD  
Sbjct: 313 MFDLLPIEEGRADLCAAMEDPEHSGPVLIRL-----RRAGRLRLLQVDLVVLPGDPGD-G 366

Query: 511 RYIGIANDITEQKKSLEG-------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           R +   +DIT      +            A  D +TG+P+R   + RL   L     +  
Sbjct: 367 RLLLSLSDITTLHDLGQQLEQSIDNARFIATHDLMTGLPDRYLMMRRLGERLTCLEAEGG 426

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ ID D ++ IND LG    D ++ S  +R+ + L    +LAR + + F ++L  
Sbjct: 427 G-IAVLCIDFDNHRLINDTLGHETADQLIKSAAKRLEQGLPEGALLARTNEDEFVVLLPG 485

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++L     +  + ++ A P+ L  R+  +T SIG A        +  +L+ A++AM+ 
Sbjct: 486 -ADALAAESRSWDIVRAFARPMRLQRRQCFLTVSIGVALHAGPGGCAEALLRAADMAMHQ 544

Query: 684 AKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEA 740
           +K RG N V  F             + + L  A+E S   L   P   + +   ++G EA
Sbjct: 545 SKARGRNTVTLFSPEIGAQFERRTAVAQALHRALEESSFELHLQPKFDVREGIRLIGAEA 604

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++    + G IS +EF+ +AE   ++ AI+L ++      +  W  +     + + +NI
Sbjct: 605 LLRLTDAELGPISPAEFIPVAEVDGLVSAIDLEVMRLAGTMMADWAARGIR--LPLAVNI 662

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            +  L +    + +   + +    P ++ +  +E+ +     R R  L RLR +G  + +
Sbjct: 663 NATTLDEPGHAD-LAERLLRVGLDPEQVTVELTETGLAAPGLRQRRNLERLRDVGYKIAI 721

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAK 916
           DDFGT  S L  L  +P   +K + S + G       +  A++R+I+ MA  +    IA+
Sbjct: 722 DDFGTGQSALGVLQSLPVAEIKIDRSFVRGLEGPEPGRARALMRAILAMAGALGLRAIAE 781

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            +  E     L   GC  +Q   +  PLG  S         P  +
Sbjct: 782 GVETEAQFSILKEEGCPAMQGFLLGRPLGLRSFEARYLAEEPRPR 826



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 8/153 (5%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG- 447
            +       Q   S  E   +    S    W+ D+    +  +      LG  +  +   
Sbjct: 125 RLFRLDAALQVARSTLENAGITPTSS----WNVDLRSGALNVSASWKDRLGYGAEDLEPL 180

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSN 506
              +W    H  D   F +        R   +Q+  R R     +   +   R +  +  
Sbjct: 181 THDDWARMSHPEDVAGFESAETRARLRRGALVQHLSRSRHRLGHWVTFLSFCRAVRWDPA 240

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           G+I   +G   D+T        +     +D LT
Sbjct: 241 GEISLLMGCDLDMTAVSTLEGALARE--RDRLT 271


>gi|320156001|ref|YP_004188380.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931313|gb|ADV86177.1| sensory box/GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 911

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 120/643 (18%), Positives = 253/643 (39%), Gaps = 31/643 (4%)

Query: 336 RAVLLIPAWILIFIWFIGLW--MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           R  L +   +++    I L   M   KR+             +     +     +     
Sbjct: 278 RLFLYLIGIVVLVAGLIALATFMLFKKRVSTRFADFEQSVMQLFSKYQLDDLSNRRTDEL 337

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWD-------------IVRDRVTTTPDIATILGL 440
              +Q +    E  SL      D +  +D             + ++ +        +LG 
Sbjct: 338 ERITQLVEVLAENTSLTQDKLQDTLQKFDALYQHRSMGMLLVVDKEIIDINQAALELLGY 397

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             G +     N L  +  N  +     +   +     + +    +   + Q    +I + 
Sbjct: 398 QKGDLVHQELNVLCKVDENQPECKVDQMYQALSNGVTQFEAT--MLTREGQEIECLIDVN 455

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + N   L      +D++EQKK    I     +D ++G+ NR + L RL  ++     
Sbjct: 456 LIHHENQQALML--SVSDMSEQKKQARMIKDLVGRDPVSGLYNRPAILARLDDLI----Q 509

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             + + + + I ID+ K++++V G  + DD +  +    G  L+  + + R+S   F  I
Sbjct: 510 HQSNQFSFLYISIDRLKQVSEVYGHLIFDDTINYIAAVFGAELRPFE-VGRISEFEFIAI 568

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A      ++   ++L  E+ ++  I  A    +  +   +L++   A
Sbjct: 569 IEDVEQCDDAIQCATHFMDVLSRKTHILGIELDLSCQIAIADPEITHHSLGYLLQSGSFA 628

Query: 681 MYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +   +H+           V+      ++I  D+  A+ +  +   Y PI+     ++ G 
Sbjct: 629 VQRFQHKAVTEVIQIGADVAKRAQSALVISRDISQAIRDKAIIAHYQPIVDTESGKVNGF 688

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIF 795
           EAL +W HP+ G +    F+ +AE+  +I  +   +L +  + I +    R    + P+ 
Sbjct: 689 EALARWIHPELGFVPPDVFIELAEQHQLIVELGESILRQACQFISTLNRTRADNGLNPLT 748

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++       L + ++ ++ +   +P ++ +  +ES ++G    +      ++ +G
Sbjct: 749 VHVNLSAMHFYHARLPDALRHVMDEFDIAPGQLVIEITESTLLGIESETLERTKEIKSLG 808

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
           I L LDDFGT  S  S L   P D VK + S +        A  ++RSI  MAK +  T 
Sbjct: 809 IQLALDDFGTGYSSFSTLCSFPLDIVKLDKSYIDQLENNDRARTLIRSIASMAKELGLTT 868

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +A+ +     +++L     D IQ  +   P+  +  LK    +
Sbjct: 869 VAEGVETASQLRKLKIWHVDEIQGYYFYRPMPESEALKAFDRQ 911


>gi|222148546|ref|YP_002549503.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221735532|gb|ACM36495.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 645

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 203/437 (46%), Gaps = 7/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +       +   A  D +TG+ NR  F  RL   +  +    N    ++++++D++K IN
Sbjct: 195 DIHHKNLRLEVLANGDPVTGLFNRIYFNGRLAGEIAAAKV-GNREIGLLLVNVDRFKLIN 253

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD  L  L +R+        + AR+SG+ F I+L + +        A  +  +
Sbjct: 254 DAFGHRGGDQFLAILGQRLKNAAGGDAVTARISGDEFAILLRNGDVRQDCRALAETVIAA 313

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-- 698
             +PI +   +++   S G A +         +   A +A+  AK  G   +  F     
Sbjct: 314 SMVPIAVHGTQVSPGLSAGIAFFPDHAENGDGLFTCASMALSDAKQDGRGQLREFDHQIK 373

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +  I++DL  A+ ++ L   + P + L   +IVG EAL++W HP++G I+  E +
Sbjct: 374 QRIDRQRRIEQDLPAALRDTALETWFQPQVDLATGKIVGFEALVRWFHPEFGAIAPPEIV 433

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             A+ + M +A+  F+ E I + +     +  MP   + +N++ ++    ++   +  + 
Sbjct: 434 NAAQAMQMCEALTGFVTENICQLLNRL-KELGMPETAVALNVSPREFALYDVSVMLDRIT 492

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +    S + +++  +E  ++ +   +   L RL   G  LT+DDFG   S L+YL  +  
Sbjct: 493 TAYGVSRNLLEVEITEETIL-DLAVAGEQLTRLENSGYKLTVDDFGMGYSSLAYLISLKI 551

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +TG   + K  A++ +++ + + +   I+A+ +    D + LT +GC   Q
Sbjct: 552 TRLKIDRSFVTGISNSPKNKALVVALVGLGRALGVDIVAEGVETVADARTLTEIGCTIGQ 611

Query: 937 DSHVASPLGFNSILKLL 953
             + + P+  + + K L
Sbjct: 612 GYYFSRPMPADMLPKWL 628


>gi|292493565|ref|YP_003529004.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291582160|gb|ADE16617.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1204

 Score =  366 bits (941), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 92/431 (21%), Positives = 188/431 (43%), Gaps = 10/431 (2%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             ++    I   A  D LTG+ NR+ F  R+   L  +   ++ +  ++ +D+D++K IN 
Sbjct: 770  LQRFHNHIAYEATHDPLTGLINRKEFEKRMNHALVRAK-HEHHQHVLLYLDLDQFKIINS 828

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              G   GD +L  + + + + +    ILARL  N FG++L   +                
Sbjct: 829  TCGYEAGDALLKEIAQLLAQFVADRGILARLGDNEFGVLLTQCSLREGYKIAEQQRIAIE 888

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
               +    + ++V  SIG  + +     ++ +L+  E A   AK  G N +    +    
Sbjct: 889  NYQLAWNNKRLSVGVSIGLVAVSDQNRDAAILLQRVETACTKAKEAGRNRIRVCELDDEE 948

Query: 700  --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV--GLEALIQWDHPKWGNISSS 755
               R   V     +   +E++ L L    II +     +    E L+++       I++ 
Sbjct: 949  FVRRHSMVEWVARIGEVLEDNRLQLWCQRIIPIAIHSAMEPHYEILLRFRDQDGQWIAAG 1008

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            EF+  AE    + AI+ ++++ + + +   R++       + IN++ + L D  L E ++
Sbjct: 1009 EFIQTAEFYHRMAAIDRWVVQSVLQWMADHRERLEQLGG-VAINLSGQSLSDERLAEFVK 1067

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
                +T   P R+    +E+  + +   S   +  ++ +G   +LDDFG+  S  SYL  
Sbjct: 1068 REFHRTGAPPHRVCFEATETAGVASLSSSARFIQEMKTLGCYFSLDDFGSGLSSYSYLKN 1127

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K +G+ +          A+++SI  +   +   +IA+ +  +  + +L  +G D
Sbjct: 1128 LPVDYLKIDGTFVKDITTNPNDYAVVKSINEIGHFMGKKVIAEYVENKAILAKLQEIGVD 1187

Query: 934  YIQDSHVASPL 944
            + Q   +  P 
Sbjct: 1188 FAQGYGIEPPQ 1198


>gi|88799555|ref|ZP_01115131.1| Hypothetical 1041 kDa protein in hypE 3'region [Reinekea sp.
           MED297]
 gi|88777640|gb|EAR08839.1| Hypothetical 1041 kDa protein in hypE 3'region [Reinekea sp.
           MED297]
          Length = 558

 Score =  366 bits (941), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 111/416 (26%), Positives = 193/416 (46%), Gaps = 10/416 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+P+R +F   LT  ++  + + +    V+ ID+D +K IN++ G +VGD +L   
Sbjct: 124 DMLTGLPDRYAFHHELTRRIENQSVEPD--FAVLYIDLDHFKDINELYGHSVGDRLLCHC 181

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            R+I  +L+  D LAR+SG+ F  I+  E +   +      + +    P+ +       T
Sbjct: 182 ARQIRTILRKEDFLARVSGDEFAAIVSWEEHYE-MHFLCQRLMRFFERPVAMDGEYYQFT 240

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713
            SIG A +     T  ++L N+E AM+ AK +G    + F             + E L  
Sbjct: 241 LSIGLAFFPEQGQTPQDLLINSEKAMFRAKQQGRAQFQLFDRQQSIEVEQSQRLAESLRR 300

Query: 714 AVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            ++         Y P+  +   E VGLE L +W  P  G +  S F+ +AE   +I A+ 
Sbjct: 301 ELKQCPEHFSTAYQPLYSVQSGECVGLEVLARWKSPVHGVVPPSAFIPLAESRGLINALT 360

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
               E I +D+ + +      PI I +N+A++ + D      +         S  ++++ 
Sbjct: 361 ARQFEIIRQDLANSKGHKLFIPI-IAVNVAAQQISDPVFERMLLDFARDVRTSGWQLEVE 419

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES +M   +     L   R+ GI + +DDFGT  S L+YL  +P D +K +   +   
Sbjct: 420 LTESQLMTQIDGLHERLQNWRRRGIRIAIDDFGTGYSCLAYLHSLPVDKLKIDRQFLQAQ 479

Query: 892 TEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           TE R    I+ +I+ MA  +   ++A+ +     +  L ++GC   Q   +A P  
Sbjct: 480 TESRKEDQIMYAIMSMANALGIEVLAEGVETAEQLTRLKQLGCAIGQGFGLAPPQP 535


>gi|158312937|ref|YP_001505445.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158108342|gb|ABW10539.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 901

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 107/434 (24%), Positives = 202/434 (46%), Gaps = 10/434 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A  D LTG+PN ++ L         +A     R  ++++D+D++K++ND LG  
Sbjct: 287 RQKEHEARHDGLTGLPN-RAELAERAAASFRAAERTGCRVGLLLLDLDRFKEVNDRLGHE 345

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK----IADFAIAMRKSIA 642
           VGD +LV    R+   L+  D++ARL G+ F ++L +          + + A  +R  + 
Sbjct: 346 VGDRLLVVAAARLTAALRPGDVVARLGGDEFAVLLPALPAGEAGRTVVGEVAGRVRGVLR 405

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFR 701
            P  +  +   V AS+G A +         + + A+LAMY AK    G      R +S  
Sbjct: 406 APYEIDGQFCDVDASVGVALYPDHGGDLPALSRCADLAMYTAKEHRLGVQAYGPRDASRA 465

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R     +L  A+E+ +L + Y P   + D  +  +EAL++W HP  G +    F+ +A
Sbjct: 466 RLRARTTAELGYALEHGQLEVHYQPQAEIADGRVRRVEALLRWRHPSRGLLLPGVFVPLA 525

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I+ I  +++ R    +  W       P+ + +N +++DL D      + A +++T
Sbjct: 526 ESAGLIRPITSWVMGRALAQVARWNAVG--IPVAVALNASARDLRDPGFVGSVAAALAET 583

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + +    +E  V  + +     L  L  +G+ ++LDDFGT    L  L  +PF+ +
Sbjct: 584 GLPAAALTFEVTEGAVTADGDEPAGALRDLADLGVRVSLDDFGTGRVSLDALRRLPFEEI 643

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + +++      ++    +R+++ MA ++   ++A+ +   ++ + L   G D  Q  H
Sbjct: 644 KIDRTVIGRMAGADRDADFVRAVVRMAADLGLRVVAEGVETPVEWRRLAGFGADAAQGWH 703

Query: 940 VASPLGFNSILKLL 953
           VA  L    +   L
Sbjct: 704 VAPALPAVLLTPWL 717


>gi|2655361|gb|AAC64871.1| ORF1 [Rhizobium etli]
          Length = 798

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 246/550 (44%), Gaps = 15/550 (2%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              L     ++V LI     Q +L        +     R       +    ++ D+    
Sbjct: 253 IEQLRSLARVVVGLIREHRQQSLLREQQRELELKQA--RFEQTERSAKVGGFEMDLSTGT 310

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  +  I   +GL  G         +      +R++ R  +   +      +  E+R+  
Sbjct: 311 IIWSDQIYRTVGLPVGKRM-TSEEVIGCYAPEERESVRRRIGDVLNGSGAGIDREYRIVT 369

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            + +  W+ + +  +   NG+  R  GI  D++E+ +  + +L  A  D+LTG+ NR ++
Sbjct: 370 PEGEERWIRV-VSDIERLNGEPSRLFGIVQDVSEKVRYEQRLLQAANVDSLTGLANRAAY 428

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              +  +    A        +++ID+D+ K++ND+LG A GD +L  +  R+ E L    
Sbjct: 429 NAHMERLTAADA----PSIGLLLIDVDRLKQVNDILGHATGDLLLKGVASRLDERLGKRG 484

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            + RL G+ F ++L +  +  ++   A  + + I  P+ +    I  T ++G A  +   
Sbjct: 485 KVFRLGGDEFSVVLDAPASVRRMGSLARHLIEYIGRPLQVAGSTINPTITVGGA-ISEGM 543

Query: 668 ITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
           + ++ + +NA+ A+YHAK   RG        + S  + R+ I  ++  A+    +   Y 
Sbjct: 544 MDAATLSQNADFALYHAKETRRGSYVHYEPSLRSRIARRIQIVREVEAALTEHRMVPHYQ 603

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+   D ++   EAL++   P    +S+++      +  +   I   MLE++A DI  W
Sbjct: 604 PIVGSADGQVWAFEALVRMQRPDGSIVSAAQLHEAFTDPSVTHHITTRMLEQVAVDIRRW 663

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            D+       + +NI++ D +  +L   + A  +       ++ L  +E+V +   E + 
Sbjct: 664 IDRGLEFG-RVGLNISASDFMRGDLETRIVAAFASRGIPLDKLVLEVTETVFLQGLEDTV 722

Query: 846 L-LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              L RLRK G+++ LDDFGT  + L++L  +P D +K + S +      E  +AI+  +
Sbjct: 723 ATTLQRLRKKGLTVALDDFGTGYASLTHLRCLPVDIIKIDKSFIDTMLVDESSLAIVELV 782

Query: 903 IPMAKNIETT 912
           + +A+ +   
Sbjct: 783 LNLARKLGYE 792


>gi|85714303|ref|ZP_01045291.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrobacter sp.
           Nb-311A]
 gi|85698750|gb|EAQ36619.1| PAS sensor diguanylate cyclase/phophodiesterase [Nitrobacter sp.
           Nb-311A]
          Length = 622

 Score =  366 bits (940), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 211/457 (46%), Gaps = 11/457 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +  + DI+ QK   E +  +A+ D LTG+P R+       +++     +  +R  V  +
Sbjct: 150 VLSSSIDISRQKAIEEELFRSAYYDELTGLPTRRVIEQHANSLIREG--EHPVRFAVAFL 207

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DID +K IND  G A GD++L+ + RR+G  L+  D+L+R+SG+ F ++L    +  ++A
Sbjct: 208 DIDNFKHINDYYGHASGDELLIEVARRLGLGLRTTDMLSRISGDEFLLLLNPVQSDAELA 267

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GG 689
           ++   + + +  P  +   E+  +ASIG + +         + +NA+ AMY  K+   GG
Sbjct: 268 EYIEFLLQRLKAPFFIDGSELFASASIGVSIYPDQGDNYEVLRQNADTAMYQIKNETKGG 327

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    +      R+ I++ L LA+ +      + P + +  ++I G+EAL++      
Sbjct: 328 AAIFDSAMQREALLRMEIEQSLRLAILDKRFCCAFQPKVDIKTQQIKGIEALVRLRSDDG 387

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
              +   F+ +A EL +I  +   +L  I R I    +      + I IN+A+K   +  
Sbjct: 388 IIQAPGTFVDLAIELGLIDELTHLVLAEIMRSIDLIDEAFG-SGVSISINVAAKQAGNVV 446

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                   + KT    +R  +  +E   +        +L  LR++G+ +++DDFG   S 
Sbjct: 447 FMTSFARALEKTGC-ATRFIVEVTEDAFVAKTRFQTEILPVLRRLGVRISIDDFGIGYSS 505

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L  I  D +K + S +       +   IL++I  + + +   +IA+ +    ++  L
Sbjct: 506 LSALADITADEIKIDRSFIVDIHKRPRSQGILKAIESLGEALGMAVIAEGVEKFEELAYL 565

Query: 928 TRM-GCDYIQDSHVASPLGFNSIL--KLLKERFPLVK 961
                  Y Q  + + P+    ++  +L   + P   
Sbjct: 566 QAATRIKYAQGFYFSEPVFLEDLVSDRLAASKRPASS 602


>gi|225850542|ref|YP_002730776.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225645831|gb|ACO04017.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 847

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 95/429 (22%), Positives = 194/429 (45%), Gaps = 15/429 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  + I   + +D++TG+ N++ F + L   +  +      + T++ IDID +K IND  
Sbjct: 422 KYSKEIEYYSTRDSITGLYNQKVFWELLNYEIARADRH-GYKFTLLTIDIDNFKAINDTY 480

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  + + I + ++  DI+AR  G+ F +IL    ++ K    A  +  SI  
Sbjct: 481 GYGFGDIILQKIAQIIRDTIRRGDIVARYGGDEFAVILP-LTDAEKGYSIAKDIIDSINR 539

Query: 644 PINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              +     ++ V+ASIG A +      + ++   A+  ++  K      V         
Sbjct: 540 FFLIATDGSKVKVSASIGMAVYPDHGKDAKDLFLFADNILHKVKMENKGSVYLPTEDDVE 599

Query: 702 SDRVMIKED---LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                I +    +  A+EN ++   + PI+ + ++++   E L + ++       + EF+
Sbjct: 600 QIYKKIGKLNITILNAIENKKVIPYFQPILDIKEDQVYIHEVLCRIENEVKTL-KADEFI 658

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE++ +I  ++L ++E   + +     +       + +N++ K ++  E  E +++L+
Sbjct: 659 RVAEKMGVIHKLDLVLMENTFKKVKEENYEG-----VLFMNLSPKAIMSKEFLESIKSLV 713

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S    +PS I    +E   + N       + +L+  G    +DDFG+  S   Y+   P 
Sbjct: 714 SDYHLNPSNIVFEITERETVSNISILEDFVMKLKDEGFKFAIDDFGSGFSSFHYIKRFPI 773

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK  G  +       K  A + SI  + KN+    +A+ +  E+ ++ +  +G DY Q
Sbjct: 774 DIVKIEGDFIRSMVKNPKDRAFVLSITTLTKNLGIKTVAEYVENEVILEAVKSVGIDYAQ 833

Query: 937 DSHVASPLG 945
             ++  P  
Sbjct: 834 GYYIGRPSP 842


>gi|167748519|ref|ZP_02420646.1| hypothetical protein ANACAC_03263 [Anaerostipes caccae DSM 14662]
 gi|167652511|gb|EDR96640.1| hypothetical protein ANACAC_03263 [Anaerostipes caccae DSM 14662]
          Length = 739

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 105/427 (24%), Positives = 195/427 (45%), Gaps = 16/427 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +++ F   +  IL     + + R  V+  DI+ +K INDV G   GD +L  
Sbjct: 143 YDRLTGLYSKEFFYQLMKDIL---MRNPDDRYDVICSDIENFKLINDVFGNTTGDQLLCG 199

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRKSIAMPINLLEREIT 653
           +     + +K   I  RL+ ++F  ++    +    I   A     ++     L    I 
Sbjct: 200 IAHMYEQEVKGMGICGRLNADQFVCMIEHREDYRDDIFRKANEQINNL-----LDGGTI- 253

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
                G  S     +++ +M   A LA    K + G +   +      S      I + +
Sbjct: 254 -VMKWGIYSAADRMLSAEQMCDRALLAARSIKGQYGKYYALYDDKLRSSLLHDQAIADSM 312

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   +  +   P  R++D  + G EAL++W+HP+WG  S + F+ + E+   I  ++
Sbjct: 313 EDALSGDQFQIYLQPKYRIIDGALAGAEALVRWEHPEWGVQSPANFIPLFEKNGFITKMD 372

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E+  R +  W D+   P I + +N++  D+ + +L   +Q  + K    PSR+ L 
Sbjct: 373 QYVWEKTCRVLQEWEDK-GYPQIPVSVNVSRADIFNADLSCILQRSVKKYGLHPSRLHLE 431

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES     P +    +  LR++G  + +DDFG+  S L+ L  +P D +K +   +   
Sbjct: 432 ITESAYTETPSQIIDTVAHLREMGFVIEMDDFGSGYSSLNMLNNLPIDILKLDMQFIQSE 491

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T       I++ II +A+ +  +++A+ +  +  +  L   GCDY+Q  + A P+     
Sbjct: 492 TAKPVSQGIMKFIISLARWMHLSVVAEGVETKEQLSRLEEAGCDYVQGYYFAKPMPCREF 551

Query: 950 LKLLKER 956
            KLL E 
Sbjct: 552 EKLLAEE 558


>gi|262172221|ref|ZP_06039899.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio mimicus MB-451]
 gi|261893297|gb|EEY39283.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio mimicus MB-451]
          Length = 778

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 203/444 (45%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR  F  ++   L LS   D     V+ ID+D +K +
Sbjct: 313 TELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVLYIDLDNFKYV 370

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L++    +    
Sbjct: 371 NDKYGHQIGDSLLVSFASHVRQLCKSFEASHNVYSIAARLSGDEFAILLVAPKRFNDCAN 430

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 431 LFAQRVLAPIQSQDNSPLSHFPITASIGIATFPKDGDHIEKLLLNADTAMYQAKNAGKNQ 490

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +  +  +  +    I+  L L + + E  LVY P      + +VG E L++W     
Sbjct: 491 IAYYSQALDQVVQRRNNIERALRLGLFDQEFNLVYQPYFTCSGKRLVGFEVLLRWQSELL 550

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++  + +   N  PI + IN++S +L   +
Sbjct: 551 GEVSPEEFIPIAEQTGLFGTIDRWVISQTFKEFSALQAMFND-PIQVSINLSSAELNSLK 609

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     K   +P  I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 610 LAQYIHQQAEKFSVTPQWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 667

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 668 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQAMKVTAEGIESETMHQWLA 727

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CDY+Q  +   P+    I K 
Sbjct: 728 DYHCDYMQGFYFGHPMSLEEIQKW 751


>gi|255655558|ref|ZP_05400967.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296451549|ref|ZP_06893284.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878806|ref|ZP_06902806.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296259614|gb|EFH06474.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430078|gb|EFH15925.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 739

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 206/437 (47%), Gaps = 12/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K +E +   A+ D+L+GI N++ F      IL     D      ++ +D++K+K IN++ 
Sbjct: 303 KLIEQLKKLAYYDSLSGIKNKEKFRKDSMYILKNYYQD---NFYLVQLDVNKFKYINEMF 359

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A G+ +L+ +++ +       +I AR+  + F +++   +   ++ +    + K I  
Sbjct: 360 GYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIA-CSTEDELLNRLSKINKEICN 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLK--NAELAMYHAKHRGGNHVESFR--VSS 699
                  +  +  S G              L    A +A    K +  +    F     +
Sbjct: 419 LSTTNSSKYKIVMSSGIYKINKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEETRN 478

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFM 758
                  +++++  A+E  E  + Y P   L D  EI G EALI+W+ P++G IS  +F+
Sbjct: 479 RLYKEKRLEDNMNKALEKGEFIVYYQPKYSLNDVNEIEGAEALIRWNSPEFGFISPIDFV 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  I++F+ E + + +  W ++    P+ I +N++   L  +   E +  LI
Sbjct: 539 PLFEKNGFIVNIDMFVFEEVCKTLNKWINK-GYTPVPISVNMSRVHLYRDNFIENITDLI 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK   SP  I+L  +ESVV  N      ++ ++++IG  +++DDFG+  S L+ L  + F
Sbjct: 598 SKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMDDFGSGYSSLNLLKDLSF 657

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +    +  +  KR   I+  I+ MAK I+  +I + +     ++ L  +GCD +Q
Sbjct: 658 DILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLREIGCDKVQ 717

Query: 937 DSHVASPLGFNSILKLL 953
               A P+  +   K L
Sbjct: 718 GYLFAKPMVLDEFEKHL 734


>gi|307943791|ref|ZP_07659135.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
 gi|307773421|gb|EFO32638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
          Length = 771

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 197/440 (44%), Gaps = 14/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +         +  D LTG+ NR+     L   +  +         V+ ID+D++K IN
Sbjct: 322 ELEALRRQAEHESHHDALTGLANRRYLERELDIRVRNARQAAGG-IAVLHIDLDRFKMIN 380

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD VL  +   +    +  D++AR+ G+ F I+  S+     ++     + +S
Sbjct: 381 DTLGHAAGDFVLEHVADVLHRETRSDDVVARIGGDEFLILSYSKGEHEPLSRMVNRIIES 440

Query: 641 IAMPINLLEREITVTASIGFASWTS---SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           ++ P+          ASIG  + T        S   L NA++A+Y AK  G      F  
Sbjct: 441 LSKPVEFDGNLCQFGASIGVNTATGKELEDFDSGRFLSNADIALYSAKEGGRGRYVFFNK 500

Query: 698 SSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +          + ++L L +EN E Y VY P +     E +G+EAL +W+HP+ G +S S
Sbjct: 501 ALRAETEASKSLSDELILGLENGEFYPVYQPQVDAQTGEWIGVEALARWEHPEKGGLSPS 560

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IA  L M+  ++  ++E+  +D+  W       P  + +N++   L D    +   
Sbjct: 561 VFIPIARRLGMLARLDEAIMEQGLKDLTHWDAVGIHVP-KLSLNLSEHRLADPAFLDW-- 617

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +        R+     E+V   + +  R   + RL+++ I+L +DDFGT  + L+ L 
Sbjct: 618 --LETHDLPVGRLSFEVLETVFSDDFDDVRRFAVDRLQELNIALEMDDFGTGHASLAGLL 675

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
                 +K    L     ++E+   ++   + +A  +E  ++A+ +  +     L  +GC
Sbjct: 676 SFSPQRLKIARELAGPVDTSERHARLVSGTVDVAAALEIEVLAEGVERKEQADVLRDLGC 735

Query: 933 DYIQDSHVASPLGFNSILKL 952
             +Q  + A P+  N ++K 
Sbjct: 736 QSLQGFYFARPMPANELVKW 755


>gi|115522200|ref|YP_779111.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
 gi|115516147|gb|ABJ04131.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisA53]
          Length = 562

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 109/540 (20%), Positives = 218/540 (40%), Gaps = 15/540 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +  +   G   + WD+  D +  T   ATI                  +          +
Sbjct: 8   ATILARLGQAAFVWDLASDAMVWTGQAATIFEGIPAEALATGAALANLLEPLRSIRADAL 67

Query: 468 LDSFVGY-RRGRLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           L +      R   + E+ VRAA      W+      ++ ++G  +R  G+     E+   
Sbjct: 68  LSASASGLARVPYRIEYGVRAAISAPVCWVEESGCCVTGADGKPVRVEGVVRINNERHAR 127

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + ++  A  D LTG  NR   +  L   ++ +          M+I ID   +IND  G 
Sbjct: 128 EQQLVALAQHDPLTGELNRTFLMASLAEAIEEALR-FRATFAFMLIGIDHLAQINDAFGF 186

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            V D+V+  + +RI   L+  D L R SGN+FG++L +             +       +
Sbjct: 187 DVADEVIKEVAQRIRARLRAGDQLGRFSGNKFGVVLKNCTMDDMGIAAERFLAGIRNDVV 246

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                 + VTASIG  S      ++ E +  A  ++  AK R       ++ +  R  + 
Sbjct: 247 PTKSGPVAVTASIGGVSAPRHARSTDEAINRAHESLDAAKSRRRGSFAMWKPNVERDAQR 306

Query: 706 MIKED----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +       +  A+    + L + P++  +       E L++        + + + + +A
Sbjct: 307 RVNIRVTDGIVTALNERRIALAFEPVVAAVSRRPAFHECLVRMRQEDGELLLAPDIVPVA 366

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+L +I+ ++  +LE +  ++    +      I + +NI+    +D +    +++L+   
Sbjct: 367 EKLGLIRLVDHRVLELVVSELAEAPE------IELSLNISPDTTMDADWWSSIESLLGAH 420

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R+ +  +E+V + + +  R  + RL+  G  + +DDFG   +    L  +  D V
Sbjct: 421 PGVAQRLIVEITETVAIQDLDHVRGFVSRLKGFGARIAIDDFGAGYTSFRNLRNLGVDIV 480

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G+ +     +    A ++++I +A+ +E   +A+ +  E     L   GCDYIQ   
Sbjct: 481 KIDGAFVQNIARSADDRAFVQTLIDLARRLEIKTVAEWVQDEPSAIMLRDWGCDYIQGRL 540


>gi|330831088|ref|YP_004394040.1| GGDEF/EAL domain-containing protein [Aeromonas veronii B565]
 gi|328806224|gb|AEB51423.1| GGDEF/EAL domain protein [Aeromonas veronii B565]
          Length = 643

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/432 (22%), Positives = 189/432 (43%), Gaps = 12/432 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A +D LTG+ NR + L+R+            +   ++++DI+ ++ IN   G  
Sbjct: 200 RRHFRAARRDPLTGLSNRVALLERMELY-----ATQEVPFGLVLVDINDFRDINSKFGYD 254

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L     RI  L +  +   RL G++F II    ++  ++ +    +  ++   I 
Sbjct: 255 TGDYLLCEFATRIRVLCEEGEWSGRLGGDQFAIIQRGSSDLRQVRELVARLLHALKQDIV 314

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRV 705
                  +   IG A +      + E+L  AE A++H++       +    + +  + R 
Sbjct: 315 YDNYPFRLEVGIGIAFYPMDSDKTQELLSRAEQALFHSRKTHVPYVIYDNSLLNETARRK 374

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  D+ +A+E++ L L Y PI+ L       +EAL++W HP+ G I  +E +++AEE  
Sbjct: 375 HLASDMIMALEHNALELYYQPIVNLESGRCEAVEALLRWRHPELGFIPPNEVIMVAEEFQ 434

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           + + +  ++L      +  W  Q  M  + + +NI+   +    L + +   + +     
Sbjct: 435 LAERVGSWVLNTACEQLYQWH-QLGMVDLQMCVNISPG-MYQRNLLKLVAKALMEHHLPA 492

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             + L  +E   M   + S  L+  L + G+ L LDDFGT  S LSYL  +P   VK + 
Sbjct: 493 RSLVLEVTEDTTMREVKNSLQLMQDLNQQGVLLALDDFGTGYSSLSYLQKLPVSKVKVDR 552

Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCD-YIQDSHVA 941
           S + G     +   ++ +I  M   +  +++ + I  +  +  L  +     Y Q    +
Sbjct: 553 SFIQGIDTSMEASELVANICRMGSMLGKSLVCEGIETQAQLDVLRSLTDIHLYGQGYLFS 612

Query: 942 SPLGFNSILKLL 953
            P     I + L
Sbjct: 613 RPEQAEKIYQTL 624


>gi|255306507|ref|ZP_05350678.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 739

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 207/437 (47%), Gaps = 12/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K +E +   A+ D+L+GI N++ F      IL     D      ++ +D++K+K IN++ 
Sbjct: 303 KLIEQLKKLAYYDSLSGIKNKEKFRKDSMYILKNYYQD---NFYLVQLDVNKFKYINEMF 359

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A G+ +L+ +++ +       +I AR+  + F +++   N   ++ +    + K I  
Sbjct: 360 GYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIA-CNTEDELLNRLSKINKEICN 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLK--NAELAMYHAKHRGGNHVESFR--VSS 699
                  +  +  S G    T         L    A +A    K +  +    F     +
Sbjct: 419 LNTTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRN 478

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFM 758
                  +++++  A+E  E  + Y P   L D  EI G EALI+W+ P++G IS  +F+
Sbjct: 479 RLYKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFV 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  I++F+ E + + +  W ++    P+ I +N++   L  +   E +  LI
Sbjct: 539 PLFEKNGFIVNIDMFVFEEVCKTLNKWINK-GYTPVPISVNMSRVHLYRDNFIENITDLI 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK   SP  I+L  +ESVV  N      ++ ++++IG  +++DDFG+  S L+ L  + F
Sbjct: 598 SKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMDDFGSGYSSLNLLKDLSF 657

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +    +  +  KR   I+  I+ MAK I+  +I + +     ++ L  +GCD +Q
Sbjct: 658 DILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQ 717

Query: 937 DSHVASPLGFNSILKLL 953
               A P+  +   K L
Sbjct: 718 GYLFAKPMVLDEFEKHL 734


>gi|126699142|ref|YP_001088039.1| putative signaling protein [Clostridium difficile 630]
 gi|255100569|ref|ZP_05329546.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|115250579|emb|CAJ68403.1| putative signaling protein [Clostridium difficile]
          Length = 739

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 207/437 (47%), Gaps = 12/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K +E +   A+ D+L+GI N++ F      IL     D      ++ +D++K+K IN++ 
Sbjct: 303 KLIEQLKKLAYYDSLSGIKNKEKFRKDSMYILKNYYQD---NFYLVQLDVNKFKYINEMF 359

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A G+ +L+ +++ +       +I AR+  + F +++   N   ++ +    + K I  
Sbjct: 360 GYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIA-CNTEDELLNRLSKINKEICN 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLK--NAELAMYHAKHRGGNHVESFR--VSS 699
                  +  +  S G    T         L    A +A    K +  +    F     +
Sbjct: 419 LNTTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRN 478

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFM 758
                  +++++  A+E  E  + Y P   L D  EI G EALI+W+ P++G IS  +F+
Sbjct: 479 RLYKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFV 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  I++F+ E + + +  W ++    P+ I +N++   L  +   E +  LI
Sbjct: 539 PLFEKNGFIVNIDMFVFEEVCKTLNKWINK-GYTPVPISVNMSRVHLYRDNFIENITDLI 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK   SP  I+L  +ESVV  N      ++ ++++IG  +++DDFG+  S L+ L  + F
Sbjct: 598 SKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMDDFGSGYSSLNLLKDLSF 657

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +    +  +  KR   I+  I+ MAK I+  +I + +     ++ L  +GCD +Q
Sbjct: 658 DILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQ 717

Query: 937 DSHVASPLGFNSILKLL 953
               A P+  +   K L
Sbjct: 718 GYLFAKPMVLDEFEKHL 734


>gi|254975095|ref|ZP_05271567.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255092484|ref|ZP_05321962.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314223|ref|ZP_05355806.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516901|ref|ZP_05384577.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650002|ref|ZP_05396904.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260683153|ref|YP_003214438.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686751|ref|YP_003217884.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209316|emb|CBA62710.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212767|emb|CBE03906.1| putative signaling protein [Clostridium difficile R20291]
          Length = 739

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 207/437 (47%), Gaps = 12/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K +E +   A+ D+L+GI N++ F      IL     D      ++ +D++K+K IN++ 
Sbjct: 303 KLIEQLKKLAYYDSLSGIKNKEKFRKDSMYILKNYYQD---NFYLVQLDVNKFKYINEMF 359

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A G+ +L+ +++ +       +I AR+  + F +++   N   ++ +    + K I  
Sbjct: 360 GYAEGNKILIHISQVLNNNTNKYEICARMDNDHFILLIA-CNTEDELLNRLSKINKEICN 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLK--NAELAMYHAKHRGGNHVESFR--VSS 699
                  +  +  S G    T         L    A +A    K +  +    F     +
Sbjct: 419 LNTTNSSKYKIVMSSGIYKITKKDDIKKIDLLIDRANIAAKSKKEKYEHSYSFFNEDTRN 478

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNISSSEFM 758
                  +++++  A+E  E  + Y P   L D  EI G EALI+W+ P++G IS  +F+
Sbjct: 479 RLYKEKRLEDNMNKALEKGEFIVYYQPKYSLDDVNEIEGAEALIRWNSPEFGFISPIDFV 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  I++F+ E + + +  W ++    P+ I +N++   L  +   E +  LI
Sbjct: 539 PLFEKNGFIVNIDMFVFEEVCKTLNKWINK-GYTPVPISVNMSRVHLYRDNFIENITDLI 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK   SP  I+L  +ESVV  N      ++ ++++IG  +++DDFG+  S L+ L  + F
Sbjct: 598 SKYNISPEFIELELTESVVFDNLNILIDIMKKIKEIGFLISMDDFGSGYSSLNLLKDLSF 657

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +    +  +  KR   I+  I+ MAK I+  +I + +     ++ L  +GCD +Q
Sbjct: 658 DILKLDRGFLIETTDTKRGKIIISKIVEMAKAIDIKVICEGVETYEQVEFLKEIGCDKVQ 717

Query: 937 DSHVASPLGFNSILKLL 953
               A P+  +   K L
Sbjct: 718 GYLFAKPMVLDEFEKHL 734


>gi|126172830|ref|YP_001048979.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125996035|gb|ABN60110.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 739

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 225/519 (43%), Gaps = 22/519 (4%)

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +    +   +       L        G+   E  +++   Q  W+ +    +S     + 
Sbjct: 221 DLFDMVREEEHAMLTDTLHVVREGVLGQAWCELPLKSIH-QLAWLKLSFSQISGDKDTL- 278

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D++   V  
Sbjct: 279 --VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---HAHDDMPICVAF 333

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D+++ IN++ G   GD +L  +  R+ +L++  DI+ARL G+ FG IL+   N    
Sbjct: 334 LDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFG-ILMHYCNVDSA 392

Query: 631 ADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              A  +   +         R   V+ S+G A           ++  A+ A   AK +G 
Sbjct: 393 KQIAKRICTQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGR 452

Query: 690 NHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
           N    +  S  + +R+  +     D+  A+  ++  L +  I+ L  EE  + LE L++ 
Sbjct: 453 NGWHLYSASDPKMNRLYTEMMASVDIVGALALNQFELYFQSIVPLNREESGLHLEILLRM 512

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S + F+  AE   +   ++L++++ + +      D      + + +N+++  
Sbjct: 513 VQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQLDL-VSVNLSATS 571

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D E    ++  +        ++ +  +E+  +   +++  LL  LR +   L LDDFG
Sbjct: 572 LGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFG 631

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S  +YL  +  D VK +G  +    E     AI++SI  + +++   ++A+ +  + 
Sbjct: 632 AGFSSFAYLKRLNVDFVKVDGQFVVNICEDCADQAIVKSICQLGQDMGFDVVAEFVESQD 691

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK-----LLKER 956
             ++L  +G DY Q   +  P+    +        L++R
Sbjct: 692 IGRKLQILGVDYAQGYAINKPIQLAELQSGLSQPWLEKR 730


>gi|152964339|ref|YP_001360123.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358856|gb|ABS01859.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 600

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 104/433 (24%), Positives = 197/433 (45%), Gaps = 25/433 (5%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D+LT + NR+ F +R    +  +        +V ++D+D +K +ND  G A GD +LV
Sbjct: 177 TRDSLTELLNRRGFDERFEEAVAAAHR-GGSDLSVALLDLDHFKDVNDSGGHAAGDALLV 235

Query: 594 SLTRRIGE----LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           SL   +            +LAR  G+ F ++     +       A A+R++ A       
Sbjct: 236 SLAETLNRTLAGCAPSSTVLARQGGDEFAVVTPGL-DLDAAVAVAEALRRAAA------- 287

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
                  S+G A        +  +L+ A+ A+Y AK  G + V +       +    + E
Sbjct: 288 ---PTGLSVGVAQLAPR-EDAGALLRRADTALYEAKAAGRSRVAT-----AATCDAGLLE 338

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D   A+++  L +   PI+     E +G+EAL +W+HP+ G +S +EF+ +AE   ++K 
Sbjct: 339 DFRAALDHGGLQVALQPIVVPGTGETIGVEALARWNHPERGPVSPAEFIPLAEANGLVKE 398

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++L +      D +  R       + + +N + + L+D +  + +  +++ T ++   + 
Sbjct: 399 LDLAVARLACADSVRLRRALGR-DVLLTVNASGRHLVDPDFVQDLLQVLADTGWAARDLV 457

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES +      +R  L  LR IG+ + +DDFGT  S  S L  IP D +K +    +
Sbjct: 458 VEVTESTLEAASAAARDTLEELRAIGVRVAIDDFGTGYSAFSQLDAIPADFLKLDKDFTS 517

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +R A+L  ++ M++ +   +IA+ +      + L  +GC   Q      PL   
Sbjct: 518 QLTASGRRRAVLGGLLRMSEELGLAVIAEGVETPEQRQALVALGCPLAQGYFFHRPLPVE 577

Query: 948 SILKLLKERFPLV 960
            +L+ L    P  
Sbjct: 578 DLLRALSAETPPA 590


>gi|67642386|ref|ZP_00441143.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|124383715|ref|YP_001028175.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10229]
 gi|126451177|ref|YP_001082022.1| EAL/GGDEF domain-containing protein [Burkholderia mallei NCTC
           10247]
 gi|251767404|ref|ZP_04820093.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
 gi|254359626|ref|ZP_04975897.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|124291735|gb|ABN01004.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10229]
 gi|126244047|gb|ABO07140.1| diguanylate cyclase (GGDEF)/EAL domain protein [Burkholderia mallei
           NCTC 10247]
 gi|148028840|gb|EDK86772.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei 2002721280]
 gi|238523533|gb|EEP86971.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia mallei GB8 horse 4]
 gi|243062834|gb|EES45020.1| putative diguanylate cyclase/putative cyclic diguanylate
           phosphodiesterase [Burkholderia mallei PRL-20]
          Length = 775

 Score =  366 bits (940), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 114/624 (18%), Positives = 230/624 (36%), Gaps = 45/624 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           R    I+    + G++ + +L  F + +  L  G     +     R   A++  GD V  
Sbjct: 151 REPAAIVLALSLLGMIALALLPVFRIRRLALRLGEAQGALEMSEARARAALVAVGDGVIF 210

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPI------------------RNWLPYIHINDRD 462
                      P    ++G+ +    G                          +   D  
Sbjct: 211 TGRAGRVECLNPAAERLIGMLADDCRGRPLVSTLRLSRTATSASSGAFAASAGLDAPDSP 270

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-----IAN 517
                 D  +G        +  +  AD     +      ++   G   R  G     +  
Sbjct: 271 GSAASPDVPLGDLEDGGSCDATLYRADGGAIAVRATASSIAPPPGHARRACGSGRVLVLK 330

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +  + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++
Sbjct: 331 SLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFR 387

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++      
Sbjct: 388 IVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLR 447

Query: 638 RKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE-- 693
                       +  +VTAS+G A            + ++ A +A   AK RG N V+  
Sbjct: 448 ASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLA 507

Query: 694 --SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW- 744
                  +     V     +  A+E  +  L   PI+    +   GL      E L++  
Sbjct: 508 DPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMG 567

Query: 745 -DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
               + G      F+  AE   ++  I+ +++  +   +   R +         IN++  
Sbjct: 568 ALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGI 624

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDF
Sbjct: 625 SIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDF 684

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +   
Sbjct: 685 GSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSA 744

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             +++L  +G DY Q  ++  P+ 
Sbjct: 745 ATLQKLAALGVDYAQGYYIGRPVP 768


>gi|27365604|ref|NP_761132.1| sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27361752|gb|AAO10659.1| Sensory box/GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 911

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 120/643 (18%), Positives = 252/643 (39%), Gaps = 31/643 (4%)

Query: 336 RAVLLIPAWILIFIWFIGLW--MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT 393
           R  L +   +++    I L   M   KR+             +     +     +     
Sbjct: 278 RLFLYLIGIVVLVAGLIALATFMLFKKRVSTRFADFEQSVMQLFSKYQLDDLSNRRTDEL 337

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWD-------------IVRDRVTTTPDIATILGL 440
              +Q +    E  SL      D +  +D             + ++ +        +LG 
Sbjct: 338 ERITQLVEVLAENTSLTQDKLQDTLQKFDALYQHRSMGMLLVVDKEIIDINQAALELLGY 397

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             G +     N L  +  N  +     +   +     + +    +   + Q    +I + 
Sbjct: 398 QKGDLVHQELNVLCKVDENQPECKVDQMYQALSNGVTQFEAT--MLTREGQEIECLIDVN 455

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + N   L      +D++EQKK    I     +D ++G+ NR + L RL  ++     
Sbjct: 456 LIHHENQQALML--SVSDMSEQKKQARMIKDLVGRDPVSGLYNRPAILARLDDLI----Q 509

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
               + + + I ID+ K++++V G  + DD +  +    G  L+  + + R+S   F  I
Sbjct: 510 HQPNQFSFLYISIDRLKQVSEVYGHLIFDDTINYIAAVFGAELRPFE-VGRISEFEFIAI 568

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +            A      ++   ++L  E+ ++  I  A    +  +   +L++   A
Sbjct: 569 IEDVEQCDDAIQCATHFMDVLSRKTHILGIELDLSCQIAIADPEITHHSLGYLLQSGSFA 628

Query: 681 MYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +   +H+           V+      ++I  D+  A+ +  +   Y PI+     ++ G 
Sbjct: 629 VQRFQHKAVTEVIQIGADVAKRAQSALVISRDISQAIRDKAIIAHYQPIVDTESGKVNGF 688

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIF 795
           EAL +W HP+ G +    F+ +AE+  +I  +   +L +  + I +    R    + P+ 
Sbjct: 689 EALARWIHPELGFVPPDVFIELAEQHQLIVELGESILRQACQFISTLNRTRADNGLNPLT 748

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++       L + ++ ++ +   +P ++ +  +ES ++G    +      ++ +G
Sbjct: 749 VHVNLSAMHFYHARLPDALRHVMDEFDIAPGQLVIEITESTLLGIESETLERTKEIKSLG 808

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
           I L LDDFGT  S  S L   P D VK + S +        A  ++RSI  MAK +  T 
Sbjct: 809 IQLALDDFGTGYSSFSTLCSFPLDIVKLDKSYIDQLENNDRARTLIRSIASMAKELGLTT 868

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +A+ +     +++L     D IQ  +   P+  +  LK    +
Sbjct: 869 VAEGVETASQLRKLKIWHVDEIQGYYFYRPMPESEALKAFDRQ 911


>gi|301346545|ref|ZP_07227286.1| diguanylate cyclase (GGDEF) domain protein [Acinetobacter baumannii
           AB056]
          Length = 631

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 104/390 (26%), Positives = 184/390 (47%), Gaps = 9/390 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GD +L+ +  R+   L     L R+ G+ F +++    ++ +    A  +   
Sbjct: 305 DAFGHHIGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTDTEEAMQLAEKVLHL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQDSYQISGKEINISASLGIALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTVFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + EI G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFVLYYQPKFN-TNLEICGVEALIRWNHPSLGMLTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+  + I  W          I +N+++    + +L   ++ L
Sbjct: 483 IGGAEKTGLIIPMGYWALEQACQQIQEWERSNTQF-YPIAVNLSALQFENKKLFSTLEGL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIIEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905
            D +K +   +           IL SII +
Sbjct: 602 VDELKIDRGFIVDLKPGSKEEVILESIIHL 631


>gi|157163979|ref|YP_001467537.1| phosphoglucosamine mutase [Campylobacter concisus 13826]
 gi|112801095|gb|EAT98439.1| diguanylate cyclase/phosphodiesterase [Campylobacter concisus
           13826]
          Length = 786

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 114/438 (26%), Positives = 217/438 (49%), Gaps = 7/438 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++  E +   +  D+LTG+ NRQSFL +L+ ++   A  + +   +  IDI+ +K IN
Sbjct: 348 ELEEKNERLRQLSEFDSLTGLLNRQSFLSKLSEMIKTKALGEKID--IYSIDINHFKAIN 405

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD+VL+ L++ I  +L    I++R  G+ F I+L  + N     +F   +   
Sbjct: 406 DSYGHYVGDEVLLKLSKNIKAILPEGAIISRFGGDDFMIVL-KQKNEGHYREFLYYLLNI 464

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA  I++ + +I + A +G +S  +S+I + +++  A  A+  AK         +     
Sbjct: 465 IAEQISVGDYKIALGAKVGVSSTQTSEILADDLIMQAGAALDAAKRDVNTKYVFYDDIKE 524

Query: 701 RSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I+  L     + E  L + P   L  ++I+G EALI+W+ P  G +S ++F+ 
Sbjct: 525 IIQEKNYIEILLNSMNFDEEFSLNFQPQYLLNGKKIIGAEALIRWNSPVKGFVSPAKFIP 584

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I  I +++ +   R +  W  +     + + INI+ K + +      +   + 
Sbjct: 585 VAEQSSIINTIGIWVAKEAIRQMSYWNKKYG-ISLKVGINISPKQVDNVNFASDIFGYVE 643

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P  + +  +E+ ++   E  + +L +    G+S+++DDFGT  S ++Y+   P D
Sbjct: 644 EFGMDPKCVDIELTEASLVNAEEIMQTVLKKFSDKGMSISIDDFGTGFSSMNYIKKYPLD 703

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K    L+      E    +++S+I +AKNIE   IA+ +  E  ++ L  +GCD IQ 
Sbjct: 704 RLKIAKELVDNIAINEIDRDVVKSVITLAKNIELKTIAEGVEDETQLEILRELGCDEIQG 763

Query: 938 SHVASPLGFNSILKLLKE 955
                P+      +L++ 
Sbjct: 764 YFWGKPMNAKDFEELIRS 781


>gi|313672725|ref|YP_004050836.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
            [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939481|gb|ADR18673.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1054

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 200/544 (36%), Gaps = 25/544 (4%)

Query: 410  AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP--YIHINDRDNFRTI 467
            A+  S D+ +  D     +     +A + G +S  + G          +  +  D F   
Sbjct: 510  AIKSSKDLCFITDFEGKILFHNEAVAKVSGYSSEEIIGKTPAIFNSGRMSRDFFDRFYQQ 569

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            + S            F  +       +    + P+   N  I  Y+ I  +IT +     
Sbjct: 570  IKS-----GKEFSGIFINKTKSGNLFYNDATVIPIL-KNNMIKGYVSIGKNITNEILLQN 623

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             I    ++D+LTG+ N   F  +    L    ++       +++DID    IN+  G A 
Sbjct: 624  EIDRVRYEDHLTGLYNYLGFQHKGNEFL---KSNPESISAFVLVDIDNMSFINNTYGFAF 680

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD+VL  +   + +L K  DI++R+ G+ F I+  +      I      +         +
Sbjct: 681  GDEVLKIVGNSLKKLTKERDIVSRIGGDDFAILFSNIKKKENIIKIVERLLSFFQKKFLI 740

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVM 706
                I +   I    +         ++  A L +   K                    ++
Sbjct: 741  ENESIYINVKISVVIYPYDGKDILSIMNKASLVLSQMKKMDDIIQFYDPDLEKQAEQYMI 800

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +++ L  A+E     L Y P       E+ G EALI+    +        F+   E+   
Sbjct: 801  VEDLLSTAIEEDRYILHYQPYFYTDTLELAGFEALIRLKDKEGNIEYPGFFIDHLEQSKY 860

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I +   ++++ ++  I             I INI++K L  +        L   T     
Sbjct: 861  IDSFEKWLIKEVSELIKE-------TGYNISINISAKALDIDSFVLKFSHL---TPDISK 910

Query: 827  RIKLSFSESVVMGNPERSRLLLGRL-RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R+ +  +E  V  N +          +K+ +   LDDFGT  S LS L Y+P D +K + 
Sbjct: 911  RLTVEITEREVNENTDLFVDNFYEFKKKMNLKFALDDFGTGYSSLSRLKYLPCDILKIDM 970

Query: 886  SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            S +     +EK  A + ++I + K    T +A+ +     +  L   GCD IQ   +  P
Sbjct: 971  SFVRDMFRSEKDTAFVNAMIDLGKRFGYTTLAEGVETLEQLVYLKNNGCDLIQGYLLGKP 1030

Query: 944  LGFN 947
            L  +
Sbjct: 1031 LDKD 1034


>gi|254507675|ref|ZP_05119807.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219549372|gb|EED26365.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 640

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 105/443 (23%), Positives = 196/443 (44%), Gaps = 7/443 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++ + + I      D  TG  NR +      T+L     +      V+ I     ++
Sbjct: 189 IDKRRAAEQKIRYQQRHDIGTGFLNRSALEFETETLLKSITDNVTTDVAVVHIGFANGRR 248

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           I    G +V D +LV    R+G+L KF  + AR +      +  S+N    I +    + 
Sbjct: 249 IQSKYGYSVWDHILVQFRHRLGDLTKFNVLTARPTSTDLAFLFESKNLDGDIQELCNLLI 308

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
                  ++   ++ + + IG A+     + +S +LK A  AM   K  G      S  +
Sbjct: 309 DVSQSHFDIEGEKLHLHSYIGIATS-KDTLCTSSILKFAVEAMQSCKDSGHKFSFYSQDI 367

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S  + +   ++  L  AV N +L L + P +  +  + +G EAL++W HP  G+IS+   
Sbjct: 368 SDVQKNINQLESYLLQAVRNDDLLLYFQPKVSPLTHQWIGAEALLRWRHPILGDISNETL 427

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  F+L    +    W D        + +N+++  L   +    ++ L
Sbjct: 428 IHLAEQNGLIFEVGSFVLRSAIQKASEWVDHV--QEFKLGVNVSAVQLQSPQFVHQVRDL 485

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++        ++L  +ES ++ +   +R  L  L K+G++L+LDDFGT  +  +YL   P
Sbjct: 486 LNTYKLPAHYLELEVTESGLIADEVVARNTLTALSKLGVTLSLDDFGTGYASFNYLKKFP 545

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +    E  +   I+RSII +AK ++ T+  + I  E     +    C+  
Sbjct: 546 FDAIKIDKSFVHHLDESNEDREIVRSIINIAKKLDLTVTVEGIENEAHEAFILEEECEVG 605

Query: 936 QDSHVASPLGFNSILK-LLKERF 957
           Q      P+  +      LK+  
Sbjct: 606 QGYLYGKPMPCDLFEASFLKQHL 628


>gi|217972362|ref|YP_002357113.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217497497|gb|ACK45690.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223]
          Length = 497

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 199/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT+++         + T+++IDI +++ +ND+ G   GD +L   
Sbjct: 82  DKLTGLVNRVGLKRTLTSMM------PLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 135

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +         ++      ++    +P ++    ++V 
Sbjct: 136 AERLNTLSLSPRLIARLNGDEFCLYYEQALTEEQLVHLRGRLQ----VPFSIKNTPVSVK 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG          +S+ML+  +LA+  A+H R      +      +   + I + L   
Sbjct: 192 LQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLRELRIIDSLPKG 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ +++Y+VY     +       +EAL++W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 252 LQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWA 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      WR       + + +N++++DL    L + + A ++     P  + +  +E
Sbjct: 312 LDQVLAQQAKWRAAGIQ--LCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITE 369

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+ L +DDFGT  S L+YL ++P + VK + + +    + 
Sbjct: 370 STLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLKDLEQD 429

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I        L  MG D +Q  + A P+    + 
Sbjct: 430 KPSEYILEASINIAKKLGYEVTVEGIETPEIRDILVAMGVDTLQGMYYAKPMRAAELE 487


>gi|27376062|ref|NP_767591.1| hypothetical protein blr0951 [Bradyrhizobium japonicum USDA 110]
 gi|27349201|dbj|BAC46216.1| blr0951 [Bradyrhizobium japonicum USDA 110]
          Length = 578

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 112/552 (20%), Positives = 224/552 (40%), Gaps = 18/552 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     + S  +   G  V+ WDI  D +        +              +   I   
Sbjct: 15  LTPALPQASDILAALGQAVFAWDIASDVIVWGEHAGAVFPGIPAERLATGAEFAKLIEPA 74

Query: 460 --DRDNFRTILDSFVGYRRGRLQYEF--RVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              R        +  G      + E+  R+  +D    W+    R  +  +G  +R IG 
Sbjct: 75  PSLRTAALAQTSAVHGADGTPYRVEYGVRMSTSD-PVVWVEETGRWFAGPDGRPVRAIGS 133

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                E+    E +   A  D LTG  NR   +  L   ++ +    +     M++ ID 
Sbjct: 134 VRINNERHARDEELTRLARLDPLTGELNRSHLIAALAEAIEETTRFRSTS-AFMLVGIDH 192

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
             ++ND  G  V D V++ + +RI   L+  D+L R SGN+FG+IL +            
Sbjct: 193 LARVNDAFGFDVADAVILDVGKRIRARLRGGDVLGRFSGNKFGLILKNCTIDDMNVAAER 252

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +       +      ++VTASIG  S       + E +  A   +  AK R      ++
Sbjct: 253 FLAGIRDEVVPTKSGPVSVTASIGAVSVPRYARNTDEAVNRAHETLDAAKRRRAGSFAAW 312

Query: 696 RVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           R  +     R   + + +++  A+    + L Y P++  +  E    E L++ D      
Sbjct: 313 RPDATRDAQRRVNIRVTDEIVTALNERRIKLAYEPVVSAVSRERAFHECLVRMDQGDGQV 372

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           + + + + +AE L +I+ ++  +LE +  ++ +       P + + +NI+    +D +  
Sbjct: 373 LLAPDIVPVAERLGLIRLVDHRVLELVVAELAAA------PDVSLSLNISPDTTMDPDWW 426

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            G+++L+        R+ +  +E+V + + +  R  + RL+  G  + +DDFG   +   
Sbjct: 427 AGIESLMLAHPGVAERLIVEITETVAIQDIDDVRGFVTRLKNFGSRIAIDDFGAGYTSFR 486

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +  D VK +G+ +     +    A ++++I +A+ ++   +A+ +  +     L  
Sbjct: 487 NLRKLGVDIVKIDGAFVQNITRSADDRAFVQTLIDLARRLDIKTVAEWVQDDEAANMLRD 546

Query: 930 MGCDYIQDSHVA 941
            GCDYIQ   + 
Sbjct: 547 WGCDYIQGRLIG 558


>gi|254227594|ref|ZP_04921025.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262395643|ref|YP_003287496.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
 gi|151939636|gb|EDN58463.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262339237|gb|ACY53031.1| C-di-GMP phosphodiesterase A-related protein [Vibrio sp. Ex25]
          Length = 788

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 114/462 (24%), Positives = 198/462 (42%), Gaps = 19/462 (4%)

Query: 506 NGDILRYIGIANDITEQKKS-LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           N +I R      D+ E+     +     A  D+LT + NR  F +  T  L       + 
Sbjct: 312 NDEIGRLSSRFFDMYEELNIIYKKTKRLAETDHLTQLANRHRFHELATRELV----SPSQ 367

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRF 617
              V+ +D+D +K +ND  G  +GD++L   +  I  + +        P   ARLSG+ F
Sbjct: 368 HLWVIYVDLDNFKYVNDKYGHELGDNLLKVFSSHIKNVCQKFSHDYDSPCFAARLSGDEF 427

Query: 618 GIILISENNSLKIADF-AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            I+L S  ++ ++ D  A  + K I+           VTAS+G A +       +++L +
Sbjct: 428 AILLSSNQDAQRLPDLLASELLKPISNLSPSWSNSFPVTASVGIAQYPQDGTDVAKLLSS 487

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N    +    +     R  ++  L  +    E +LV+ P +   D E
Sbjct: 488 ADAAMYQAKRAGKNQYAYYSAALNVESQRRSQLERALRKSNVEEEFHLVFQPYMNNRDNE 547

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I GLE L++W+    G +   EF+ IAE+  +   I+ ++      +    R+      I
Sbjct: 548 IEGLEVLLRWEAEGIGPVPPKEFIPIAEQAGLFDKIDRWVFANATAEYHQLRNIFGK-DI 606

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + IN++S +L   E+   +    SK    P  I+L  +E+        +   L  L K 
Sbjct: 607 VLSINLSSAELNSIEMANYIHDQASKNGVKPECIELEITETFAAEQQGTAL--LDELSKR 664

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTI 913
           G  L +DDFG+  + L+ L   P   +KF+    +T        +++ II +      T+
Sbjct: 665 GYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLVTLMKTNNGHVIKPIIDLCHAQNKTV 724

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ I   +  + L+   CDY+Q      P+    +    + 
Sbjct: 725 TAEGIEHNVMHEWLSSYRCDYMQGYLFGKPMSKEQLNLWWQS 766


>gi|258624742|ref|ZP_05719676.1| c-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM603]
 gi|258583029|gb|EEW07844.1| c-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM603]
          Length = 791

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 117/444 (26%), Positives = 204/444 (45%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR  F  ++   L LS   D     V+ ID+D +K +
Sbjct: 326 TELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L++    +   +
Sbjct: 384 NDKYGHQIGDSLLVSFASHVRQLCKSFEASHNAYSIAARLSGDEFAILLVAPKRFNDCAS 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 LFAQRVLAPIQSQDNSPLSHFPITASIGIATFPKDGDHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +  +  +  +    I+  L L + + E  LVY P      + +VG E L++W     
Sbjct: 504 IAYYSQALDQIVQRRNNIERALRLGLFDQEFNLVYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++  + +   N  PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISQTFKEFSALQAMFND-PIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   +P  I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQYIHQQAERFSVTPQWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQAMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CDY+Q  +   P+    I K 
Sbjct: 741 DYHCDYMQGFYFGHPMSLEEIQKW 764


>gi|117620444|ref|YP_856622.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117561851|gb|ABK38799.1| GGDEF family protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 607

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 94/433 (21%), Positives = 202/433 (46%), Gaps = 10/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + ++     A+ D LT +PNR +F+ RL   L       +   T+ +++++ +K++ND L
Sbjct: 157 REMKLQYFLAWNDPLTLLPNRAAFMTRLER-LAKGKQPADCTLTICLVELNNFKEVNDSL 215

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD++L  +  +I E       +AR+ G+ F + +           + + +   +  
Sbjct: 216 GYAAGDELLTMVANQIREYAHDQAFIARMGGDEFALFIYGAMPIEHRVPYLVRLLDELRP 275

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +   +    V  S+G +    +     E++  A++A+ +AK    NH++ F    F   
Sbjct: 276 TVFQADPAHRVRVSMGISQHPITAHKIEELILFADIALANAKKLKENHLQVFNHRMFEHY 335

Query: 704 --RVMIKEDLCLA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +  +L      + NS LYL Y P+I+  +   +G E LI+W HP++G I+  + +
Sbjct: 336 SRNRKLAAELREHLNIISNSTLYLHYQPVIKPGNAYNMGAEVLIRWHHPEYGFINPLDII 395

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  + + +  ++  R+  D+           + + IN++   +    L   +  ++
Sbjct: 396 AMAEENGLGELLGKWIFSRVNHDMSQLPASFVD-KLELAINLS-NSMFTPALFHQVNEML 453

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++     ++ L  +E++ + +   S+ +   L+ I + + LDDFGT  S  SYL  + F
Sbjct: 454 QQSPLRAEQLILELTETIALDDLPLSQRIFKELKHIHVRIALDDFGTGWSSFSYLMSLSF 513

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S ++      ++   + SI  ++  +   ++A+ +    ++++L  +G D IQ
Sbjct: 514 DKLKIDKSFVSNIETDPRQFMFVESITKLSHQLGLVVVAEGVENLHELQQLAHIGVDEIQ 573

Query: 937 DSHVASPLGFNSI 949
             + + PL     
Sbjct: 574 GYYYSKPLSPAEF 586


>gi|307267418|ref|ZP_07548909.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917574|gb|EFN47857.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 424

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/424 (25%), Positives = 198/424 (46%), Gaps = 16/424 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR    +          +  N +  V ++D + +  IND  G   GD VLV
Sbjct: 13  YYDYLTHLPNRYFLYEY--------YSSSNCQFVVALLDFNNFTYINDSYGHHFGDKVLV 64

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +++ + E++K    + RL G+ F ++     N  +       + +       + ER+I 
Sbjct: 65  EISKMLIEIVKEKGKIFRLGGDEFVVLFH--CNLDEAISVIENVIEKFNYVFKVEERDIL 122

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDL 711
            T S G            ++++ A+ AM+ AK  G +    F  +          +  D+
Sbjct: 123 TTVSAGIYVS-KVGEHMDDIIRKADAAMFEAKKLGKSKYVIFDKTIEDKIIEKAEMMVDI 181

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N+E YL++ PI  L +  I  +EAL +W + K+G+IS S F+ + EE  +IK   
Sbjct: 182 KKAMLNNEFYLLFQPIYDLRENRIREVEALARWRNDKYGDISPSRFVPVLEETGLIKEFG 241

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           +F++E + + I  WR++     + + IN++   L D+E       LISK     + I + 
Sbjct: 242 IFIIEDVFKQIKDWRNKGIE--LKVNINVSPLQLRDDEFFFKFDELISKYNIPSNLIGIE 299

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           F+E+ ++   E+    +    + GI ++LDDFG   S L  +   P  T+K + SL+   
Sbjct: 300 FTETQILDIKEQKVNKIDEFLRRGIKISLDDFGVGYSSLINMIEFPISTIKMDKSLIDRI 359

Query: 892 TEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            E +   +++ I+ ++K +   ++A+ +     +  L   GCD IQ  +++ P     I 
Sbjct: 360 DENKVKTLIKGILYISKEMNYEVVAEGVETGEQLSMLKEWGCDKIQGYYISRPKTSEEIE 419

Query: 951 KLLK 954
            + +
Sbjct: 420 LMFR 423


>gi|119944955|ref|YP_942635.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863559|gb|ABM03036.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 931

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 209/550 (38%), Gaps = 37/550 (6%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            +  +    +  S  IV   DI    +        + G A   + G   + +      D 
Sbjct: 396 KNLNQYKQLLDKSS-IVSKTDIRGVIIYVNDKFCEVSGYAREELIGKKHSIVR-----DP 449

Query: 462 DNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D+ R I  +       +   +   + RA D   +++   I P+ + +G I+ YI    D+
Sbjct: 450 DSSRAIFKNMWKTIAAKKVWKGTLKNRAKDRSTYYVKTFIMPILDDDGQIISYIASRTDV 509

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE  +  + I+   ++D LTG+ NR + +D++  I        +   T+++I+ID++  I
Sbjct: 510 TELIE-KDKIIKQQYKDRLTGLQNRNALIDKIKKI-------KSEHATLILINIDRFSDI 561

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD  L      +         + R+SG+ F ++     +  K    A  +  
Sbjct: 562 NDYYGYEKGDKTLEHFASVLKSKCFE---VFRISGDEFALLCEYPLDQKKKNTIAEFITG 618

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                 N+L  +IT+  S G A    +     E+   A +A+   K              
Sbjct: 619 LENEVYNILADKITLLLSCGVAHGAKN-----EIYNLAHVALKENKKDNNIVTFFNDNIY 673

Query: 700 FRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +       +   +   + N +    Y  I+     +I   E LI+        ++   
Sbjct: 674 LHNKIAENIKVIAGIKEGILNDKFVPFYQGIVDNKTLKITKYECLIRLKEDNGKVLAPYL 733

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A++  +   + + M+ +                    IN   +D+   ++   +  
Sbjct: 734 FLEHAKKAKLYYKLTMIMIRKSFEKFA-------DNNYDFSINFTLQDIQSVKVVSMLMD 786

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +       SR+ +   ES  + N +   + + +++K G  + +DDFG+  S  +YL  +
Sbjct: 787 YLELYQC-GSRLIIEIVESEGIENFDEVLVFIKKIKKQGCKVAIDDFGSGYSNFNYLSKL 845

Query: 877 PFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +GSL+         +  + SI+  AK +    IA+ +  E     L  +G DY
Sbjct: 846 DVDYIKIDGSLIQNIDNDPAQLATVESILHFAKKVNIKTIAEFVETENIYDILNDLGVDY 905

Query: 935 IQDSHVASPL 944
            Q  + + P 
Sbjct: 906 SQGYYFSKPQ 915


>gi|229522343|ref|ZP_04411759.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229340328|gb|EEO05334.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 627

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I INI+S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINISSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|237734295|ref|ZP_04564776.1| sensory box/GGDEF family protein [Mollicutes bacterium D7]
 gi|229382525|gb|EEO32616.1| sensory box/GGDEF family protein [Coprobacillus sp. D7]
          Length = 785

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 204/442 (46%), Gaps = 21/442 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++         A  D LT I NR +F      ++     + ++   +   DID++K IND
Sbjct: 116 RRAEDNEYRIMADFDTLTKIYNRTAFYREAKKLIT---QNQDINYDLACFDIDRFKIIND 172

Query: 582 VLGIAVGDDVLVSLT----RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           + G +VGD++L+ +     +R+ +L     ++ RLSG+ F I++  + N   +      +
Sbjct: 173 IYGSSVGDELLIYIANTGVKRMKKL---GGLIGRLSGDLFAIVVPHQANIEDL------L 223

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +   I   +  I V  S G+ +     +  + M   A +A+   K +      ++  
Sbjct: 224 LQQMNEDIGNFDLGIKVVVSFGYYNIDDLSLPVNNMCDRAMMAIKKVKDKYNTSYATYDD 283

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +   I +++  A EN E    Y P   ++    +G EAL++W  P  G +  S
Sbjct: 284 ELRDQVLEEQRIIDEMDRAFENDEFIPYYQPKFNMVTRTYIGYEALMRWQSPTRGMVLPS 343

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E+   I   +  +  ++ +D++  R Q     + + +N++  +L D EL   + 
Sbjct: 344 TFIPVFEKNGFISKADRVIWRKVCQDMVIAR-QKGHVLLPVSVNVSRIELYDPELGNTIL 402

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++   S    +L  +E+  M +  +    + +L+++G ++ +DDFG+  S L+ L  
Sbjct: 403 KLLAEYELSIELFQLEITETAYMQDSNQMIEAVVKLKELGFTILMDDFGSGFSSLNILKE 462

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +PFD +K + + +    +   A  IL+S+I MAK +   +IA+ +  +     L  +GC+
Sbjct: 463 LPFDIIKIDLAFLEHFDKNNKAEKILKSVIQMAKRLNMEVIAEGVETKRQEDFLVELGCN 522

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q    A P+  + I  +++ 
Sbjct: 523 RAQGYRFAKPVSASKIAYMVEN 544



 Score = 45.7 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 13/159 (8%)

Query: 407 QSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWL--PYIHINDRD 462
              A+L     V+++D  RD   +  TP       LA   +   + N      +H  D  
Sbjct: 578 YRQALLELNAQVFEYDFKRDNMIIFDTPTKENGSNLAKMEIPNYLYNVSIGRIVHSKDVK 637

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++T+ +         +   F +      + W+    R + + +      IG++  I+++
Sbjct: 638 RYQTVFNG--NQEFKVIYRRFMINHGSG-YTWVKDTGRIIYDEDNKPKICIGVSRVISDE 694

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           K + + +   +  +  T       F   +  IL     D
Sbjct: 695 KLNEQMMNVLSVMEQSTD------FDSSINHILAEIGDD 727


>gi|207724797|ref|YP_002255194.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206590022|emb|CAQ36983.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 373

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 179/372 (48%), Gaps = 6/372 (1%)

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R+ + ++  D + RL  + FG+++         A     +   +   + +  R
Sbjct: 1   MLQIVAERLRQTMRDEDTVVRLGSDEFGLLVEGLPLPEAAAPIGDKLLFRLRESVEVDGR 60

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708
            + VTASIG A    +  T+  +L +A+ AM+  K   GN    +    ++     + I+
Sbjct: 61  RLRVTASIGVAIHPYNGATADALLAHADAAMFECKQAAGNAYRFYEPRLNTTAHRVLQIQ 120

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A  N +L + Y P      + + G EAL++W+HP+ G +S +EF+ +AE    I 
Sbjct: 121 RALSHAALNGQLSVYYQPKFDAHTQSMTGAEALLRWNHPELGPVSPAEFLPLAERTGTII 180

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++E + R I+ W D A M P+ I +N++ +     +L + +  ++ +   +  R+
Sbjct: 181 ELGDWVVEEVCRQIMYW-DTAGMAPLKIAVNLSPRQFQQPDLVQRLSQILHRYQVAADRL 239

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               +E+  M +  +S   + +++ +G+ + +DDFGT  S LSYL       +K + + +
Sbjct: 240 MFEITETAAMRDAGQSIAAIRQIQSLGVEVAIDDFGTGYSSLSYLQRFRAQQIKIDRAFI 299

Query: 889 TGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   +      AI+R+I  MA +++ T++A+ +     ++ L  + CD +Q   +  PL 
Sbjct: 300 SALDDNPSESYAIIRAICAMAHSLDMTVVAEGVETGAQMQALVNLHCDQVQGYLLGRPLA 359

Query: 946 FNSILKLLKERF 957
                 L+  + 
Sbjct: 360 AREFQTLIDRKQ 371


>gi|329893903|ref|ZP_08269954.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [gamma
           proteobacterium IMCC3088]
 gi|328923422|gb|EGG30738.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) [gamma
           proteobacterium IMCC3088]
          Length = 445

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 205/441 (46%), Gaps = 29/441 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DNLTG+ NR      L + L      +    +V+ ++I ++  ++D +G  +G+ ++  
Sbjct: 12  TDNLTGLINRVG----LESSLKELDLSEAKALSVVSVEISRFGNVSDSMGAELGNKIIAM 67

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             +R+ ++      + R  G+ F ++  ++ +  +       ++     P  +  + I +
Sbjct: 68  TAKRLTKMFPTAVFIGRTHGDHFCLVFKNQQDLEEQLAL---LQDFTQRPFAVRGQVIVL 124

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLC- 712
           +  +G A W      + ++L +AE+A++ AK  G         +     +R  ++ DL  
Sbjct: 125 SVRVGVALWDPVAEETQDLLHSAEIALHRAKREGLKVCFFDQDMKEQAKERHKLENDLRV 184

Query: 713 ----------LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                      A+ N E  LVY PI+ + +  I   EALI+W HP  G +S +EF+ +AE
Sbjct: 185 SLATRHVELHKAISNDEFALVYQPIVNVRNGTIHACEALIRWTHPDRGFVSPAEFIPMAE 244

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKT 821
           ++ ++  +  ++L +   D ++W    +   + + +N++    +++  L   ++  I ++
Sbjct: 245 QIQIMDVLGSWILRKACADAMAWPANEDGSEVGVSVNVSPTQFVESRLLVASVKQAIEES 304

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SPSR+KL  +ES           +L  L+ +G ++ LDDFGT  S L+ L  +P D V
Sbjct: 305 GISPSRLKLEITESTAF--ATTMVSVLEELKALGCTIALDDFGTGYSSLTQLNDLPLDYV 362

Query: 882 KFNGSLMTGSTEKRIA-------ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           K + S +       +A       + ++++ +  + +   I + +  +  +  +T MG D 
Sbjct: 363 KLDQSFIRQIGSDDVAVDQHGTRLSKAVLALCASFDQIAIVEGVETKHQLTCVTDMGADL 422

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           +Q  + + PL    IL  L +
Sbjct: 423 VQGYYFSKPLKMPDILTFLNQ 443


>gi|307824674|ref|ZP_07654898.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
 gi|307734328|gb|EFO05181.1| diguanylate cyclase/phosphodiesterase [Methylobacter tundripaludum
           SV96]
          Length = 734

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 191/441 (43%), Gaps = 12/441 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++L  +   A  D LTG+ NR+ F D L   +  S    +   +V+++D+D +K IND  
Sbjct: 298 RTLLELEYYAVHDPLTGLHNRRQFNDILHYEIGRSERHKH-EFSVLMLDLDDFKDINDSY 356

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD  L ++   + E  +  D+ AR+ G+ F IIL  E         A  + +++  
Sbjct: 357 GHPTGDTALCAIADALLEHTRNGDLCARIGGDEFAIILT-ETGPEGARVVAENVSRALRE 415

Query: 644 P--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               +       +T SIG  S+     T   +L+  + AMY AK  G + V +F  +  R
Sbjct: 416 MAITSSQGNRFHLTVSIGVTSYPVDGQTIDTLLEGVDAAMYKAKDMGKDSVCTFDATETR 475

Query: 702 SDRVMI---KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                     E+L  A++   +   Y  I+     E+   E L +   P     S++ F+
Sbjct: 476 VSIRETRDNAENLREALKEGRIVPYYQSIVNCQSGELFAFETLARLKSPTGETTSAAMFI 535

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQAL 817
              ++  + + ++L M+        +  D         I IN++ +++    +    + L
Sbjct: 536 ETIDKYGLARELDLAMINNSFAAKRACMDANRPEANAKIFINLSVQEIQGRGILGYAEEL 595

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K    P  I     E   +G+    R  L  LR+ G +  LDDFGT  +   YL  + 
Sbjct: 596 CQKLELPPESIVFELLERDAIGDMTNMRRFLTNLRRKGFAFALDDFGTGYNSFHYLRELR 655

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F+ VK +G+ +     ++   A++ ++  + ++I+   +A+ +  +   + L  MG +Y 
Sbjct: 656 FEYVKIDGAFVRNILTSKVDYALVHNLSRLCQDIDILTVAEFVENQEIWEALKNMGINYA 715

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  H+  PL    + + LK R
Sbjct: 716 QGYHIGMPLP--EMKQTLKSR 734


>gi|156977361|ref|YP_001448267.1| diguanylate cyclase/phosphodiesterase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156528955|gb|ABU74040.1| hypothetical protein VIBHAR_06147 [Vibrio harveyi ATCC BAA-1116]
          Length = 778

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/462 (23%), Positives = 201/462 (43%), Gaps = 19/462 (4%)

Query: 503 SNSNGDILRYIGIANDITEQKKS-LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +++ +I R      D+ E+  +        A  D+LT + NR  F +  +  L      
Sbjct: 309 LDTDDEIGRLSSRFFDMYEELNNVYHKTKRLAETDHLTQLANRHRFHELASQELAE---- 364

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSG 614
            + +  V+ ID+D +K +ND  G  +GD +L   ++ I    +        P   ARLSG
Sbjct: 365 PSEQIWVIYIDLDNFKYVNDKYGHELGDKLLQVFSKHIRNACQKFTQQYNSPCFGARLSG 424

Query: 615 NRFGIILISENNSLKIAD-FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           + F I+L S   + ++ D FA  + K I       +    VTAS+G A +       +++
Sbjct: 425 DEFAILLSSNQENSELPDLFAAELLKPINNLTQSAKNSFPVTASVGIAQYPRDGGDIAKL 484

Query: 674 LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L +A+ AMY AK  G N    +    +     R  I+  L  A    E  LV+ P +   
Sbjct: 485 LSSADAAMYQAKRAGKNQYAYYSAALNIEAQRRSQIERALRKANVEEEFRLVFQPYMNSN 544

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             EI GLE L++W+    G++  +EF+ IAE+  + + I+ ++      +    +     
Sbjct: 545 ANEIEGLEVLLRWEAEGIGSVPPNEFIPIAEQTGLFEKIDRWVFANAMAEYYQLKSIFGK 604

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + IN++S +L    + E +    ++       I+L  +E+    + ++   LL  L
Sbjct: 605 -DIILSINLSSAELNSLSMAEFIHEKATQNGVPTRCIELEITET--FASDKQGTALLDEL 661

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIE 910
            K+G  L +DDFG+  + L+ L   P   +KF+   + T        +++ II +     
Sbjct: 662 SKLGYKLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLLTLMNTDNGHVIKPIIELCHAQN 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             + A+ I   +  + L+   CD++Q      P+    +   
Sbjct: 722 KKVTAEGIEHNVMHEWLSSYRCDFMQGYLFGKPMNKEQLGHW 763


>gi|37680248|ref|NP_934857.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37198995|dbj|BAC94828.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 911

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/541 (19%), Positives = 227/541 (41%), Gaps = 16/541 (2%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           + ++ +        +LG   G +     N L  +  +  +     +   +     + +  
Sbjct: 380 VDKEIIDINQAALELLGYQKGDLVHQELNLLCKVDESQPECKVDQMYQALANGVTQFEAT 439

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             +   + Q    +I +  + + N   L      +D++EQKK    I     +D ++G+ 
Sbjct: 440 --MLTREGQEIECLIDVNLIHHENQQALML--SVSDMSEQKKQARMIKDLVGRDPVSGLY 495

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR + L RL  ++         + + + I ID+ K++++V G  + DD +  +    G  
Sbjct: 496 NRPAILARLDDLI----QHQPNQFSFLYISIDRLKQVSEVYGHLIFDDTINYIAAVFGAE 551

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  + + R+S   F  I+            A      ++   ++L  E+ ++  I  A 
Sbjct: 552 LRPFE-VGRISEFEFIAIIEDVEQCDDAIQCATHFMDVLSRKTHILGIELDLSCQIAIAD 610

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
              +  +   +L++   A+   +H+           V+      ++I  D+  A+ +  +
Sbjct: 611 PEITHHSLGYLLQSGSFAVQRFQHKAVTEVIQIGADVAKRAQSALVISRDISQAIRDKAI 670

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
              Y PI+     ++ G EAL +W HP+ G +    F+ +AE+  +I  +   +L +  +
Sbjct: 671 IAHYQPIVDTESGKVNGFEALARWIHPELGFVPPDVFIDLAEQHQLIVELGESILRQACQ 730

Query: 781 DIISW---RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
            I +    R    + P+ + +N+++       L + ++ ++ +   +P ++ +  +ES +
Sbjct: 731 FISTLNRTRADNGLNPLTVHVNLSAMHFYHARLPDALRHVMDEFDIAPGQLVIEITESTL 790

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897
           +G    +      ++ +GI L LDDFGT  S  S L   P D VK + S +        A
Sbjct: 791 LGIESETLERTKEIKSLGIQLALDDFGTGYSSFSTLCSFPLDIVKLDKSYIDQLENNDRA 850

Query: 898 --ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++RSI  MAK +  T +A+ +     +++L     D IQ  +   P+  +  LK    
Sbjct: 851 RTLIRSIASMAKELGLTTVAEGVETASQLRKLKIWHVDEIQGYYFYKPMPESEALKAFDR 910

Query: 956 R 956
           +
Sbjct: 911 Q 911


>gi|307718180|ref|YP_003873712.1| hypothetical protein STHERM_c04670 [Spirochaeta thermophila DSM
           6192]
 gi|306531905|gb|ADN01439.1| hypothetical protein STHERM_c04670 [Spirochaeta thermophila DSM
           6192]
          Length = 706

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 122/598 (20%), Positives = 220/598 (36%), Gaps = 42/598 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I+  L   +  + +       S      G+ +   D     +   P    ++   S 
Sbjct: 114 AVTIELSLFRHHLHRELEIQRTWLSSLFSSIGEAIILLDEDGGILFLNPGAEELIDATSN 173

Query: 444 SMHGPIRNWLPYIHINDRDNFRT----ILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIR 498
              G         +  D D         L      R G + ++   +  +  +  ++   
Sbjct: 174 EAVGKPLVEFIRFY--DVDTGEEIPFLSLAQESRGREGGIIFDHIYLLTSTGERIFVQGT 231

Query: 499 IRPM--------SNSNGDIL----------------RYIGIANDITEQKKSLEGILCNAF 534
           I  +           +G                    ++ +  +ITE ++    +   + 
Sbjct: 232 ISNLTGGLQTGNRGGSGRTEDEEHPYPLPFPSVSSGGFVLVLRNITEVRRLSTIVRYQSV 291

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR   L  L   L  +  D     T   +DID++K +NDV G   GD +L  
Sbjct: 292 HDPLTGLLNRSQLLTSLQESLRQADPD-TPLDTFAFLDIDQFKVVNDVFGHIGGDVLLKE 350

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               + + L     +AR+  + FGIIL    +          +  S+       ++ + V
Sbjct: 351 TADLLRKKLPDESTIARIGDDEFGIILRGVKS-GDAERILRRLVTSLRRSFIWEDKTLPV 409

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR----VMIKED 710
           T SIG  + T        +L  A+ A   AK  GGN +                +     
Sbjct: 410 TVSIGAVAITPRHGDIYRVLAAADAACAVAKEEGGNRLRIVSPEDTDVQHRLGELHWIAR 469

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+    L L    II L        + ++     +   I   EF+ +AE   ++  I
Sbjct: 470 LQQAIREERLTLYAQDIIPLGAHNGFPKKEILVRLKEEETLILPGEFIPVAERYNLMPLI 529

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + +++E + +   S  D          +N++S  LLD    +     + +T + PSR+ L
Sbjct: 530 DRWIIEAVLQYGTSTPDHR---DTVFAVNLSSATLLDEGFPDFFLRRLKETQFPPSRLCL 586

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + N  ++ L + R R++G S  LDDFG   S  +YL ++P D +K +GS +  
Sbjct: 587 EITETTAIRNFRKASLFIRRFREMGCSFALDDFGMGFSSFAYLKHLPVDFLKIDGSFVQT 646

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               E    +++SI  M K +    IA+ +      ++L  +  DY+Q   V  P   
Sbjct: 647 IVENEVDYQLVKSIHTMGKIMGKKTIAEFVSSREIYEKLATIPVDYVQGFFVGEPHPL 704


>gi|107023113|ref|YP_621440.1| diguanylate phosphodiesterase [Burkholderia cenocepacia AU 1054]
 gi|105893302|gb|ABF76467.1| diguanylate cyclase/phosphodiesterase [Burkholderia cenocepacia AU
           1054]
          Length = 326

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 160/316 (50%), Gaps = 5/316 (1%)

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I  P  + E E+ V+ASIG A +  +     +++ NA+ AMYHAK  G N    F  S  
Sbjct: 2   IRKPFRVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAKALGRNAYCFFEASMN 61

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  + + I ++L LA+E  EL L Y P   +    I+G+EAL++W HP  G IS  +F+
Sbjct: 62  ANVREHLKIVQELRLALERRELVLHYQPKFDVPHGPIIGVEALLRWMHPTRGLISPDQFI 121

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  +I  I  ++L+   R +  W D        + +N++        L   ++A +
Sbjct: 122 SIAEKTGLIVPIGEWVLDEACRQMRVWCDA-GRTDWTMAVNLSPLQFGHASLIRVVEATL 180

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  + L  +ES  M + + S  +L +L  +G+ +++DDFGT  S L YL  +P 
Sbjct: 181 QRHALEPHCLTLEITESTAMRDADASLRILQQLHDMGVRISIDDFGTGYSSLLYLKRLPA 240

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   +       +  AI+ +I+ + + ++  I+A+ +      + LTR+GC+ +Q
Sbjct: 241 SELKIDRGFIRDLEHDTEDAAIISAIVALGRALDLKIVAEGVETAAQQQFLTRLGCNSLQ 300

Query: 937 DSHVASPLGFNSILKL 952
              +  P+  +  +++
Sbjct: 301 GFLLGRPMPADHFVEM 316


>gi|86357767|ref|YP_469659.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
 gi|86281869|gb|ABC90932.1| putative sensory box/GGDEF family protein [Rhizobium etli CFN 42]
          Length = 753

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 102/452 (22%), Positives = 202/452 (44%), Gaps = 17/452 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKYKK 578
           ++  ++ + +   +  D LTG+PNR+     +  ++      D   R  ++ ID+D++K+
Sbjct: 309 SKLVRARQRLEHLSLHDALTGLPNRRF----VDQMISQPPRPDPQDRLILIHIDLDRFKE 364

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G A GD VL +   R+ +L    D+ AR+ G+ F     S +   K A+ A  + 
Sbjct: 365 INDTKGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVFASWSTDPEPKAAELARQIV 424

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFR 696
            ++   I +      V AS+G A  T S       ++L NA+LA+Y AK  G      F 
Sbjct: 425 DALQQTIFIDGAGYVVGASVGVAWETESARDRDLGQLLLNADLALYEAKKAGRGRAAVFT 484

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       + ++   A+E  EL   + P       +I G+EAL +WDHP+ G +  
Sbjct: 485 EELRSAAIHAKELADEFNQALERDELVAFFQPQFNANTLDIAGVEALARWDHPRKGLLGP 544

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+  AE+L     ++  +L++   ++  W       P  + +NI+++ L    L   +
Sbjct: 545 NAFLDAAEKLGRSGDMDRLILQKALFELTRWDGLGMHIP-RVSVNISARRLAQANLLAEL 603

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            AL      +  R+     E++     +     ++  ++ +GI + +DDFGT+ + +  L
Sbjct: 604 SAL----PAAKDRLCFELLETISFDELQPALNEVIPAIKALGIEIEIDDFGTEHASIVSL 659

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                  +K +  ++     +  +  ++ SII + ++    I+A+ +      K L  +G
Sbjct: 660 LRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHAKILKDLG 719

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           C  +Q   +A P+  + +++  + +       
Sbjct: 720 CHLLQGYALARPMSSDQLIEFCRMKGTGTAKA 751


>gi|160941295|ref|ZP_02088632.1| hypothetical protein CLOBOL_06188 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435856|gb|EDP13623.1| hypothetical protein CLOBOL_06188 [Clostridium bolteae ATCC
           BAA-613]
          Length = 730

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 195/436 (44%), Gaps = 14/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    ++     D LTG+ +++ F  R+   L       +    ++  DI  +K IND+ 
Sbjct: 145 RETAAMINLVQYDRLTGLYSKEFFYQRVRETL---MQHPDREYDIICSDIVNFKLINDIF 201

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI  GD +L  + R   ++     I      ++F  +L       +  ++   +      
Sbjct: 202 GIPAGDHLLNEIGRLYKKVAGKNGICGHFHADQFACLL------ERRWEYTDELFIRCNA 255

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
            +N L     V    G        ++  +M   A LA    K R G +  ++        
Sbjct: 256 RVNTLPNARNVVMKWGIYQVADRNVSVEQMCDRALLAARSIKGRYGTYFAAYDDQLRNRL 315

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I + +  A+   +  +   P  R+ D  + G EAL++W HP WG  S  EF+ + 
Sbjct: 316 LREQAITDSMEPALAKKQFEVYLQPKYRIKDHRLSGAEALVRWRHPVWGFQSPGEFIPLF 375

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  ++ ++ ER A  +  W D    PPI + +N++  D+   +L + +  ++ + 
Sbjct: 376 EQNGFITKLDQYVWERAASVLREW-DNRGYPPIPVSVNVSRADIYHKDLADMLLGIVRRY 434

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PSR+ L  +ES    NPE+    +G LR++G  + +DDFG+  S L+ LG +P D +
Sbjct: 435 RLQPSRLHLEITESAYTENPEQVIETVGYLRELGFVIEMDDFGSGYSSLNMLGKMPVDIL 494

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +    +      IL  I+ +A+ ++ +++A+ +     ++ L +  CDY+Q  +
Sbjct: 495 KLDMKFIQDEAAGPDDGGILHFIMELARWMDLSVVAEGVETRQQLERLKKADCDYVQGYY 554

Query: 940 VASPLGFNSILKLLKE 955
            A P+  N   +LL++
Sbjct: 555 FARPMPINEFEELLRD 570


>gi|85710883|ref|ZP_01041944.1| Intracellular signaling protein (GAF,GGDEF,EAL domains) [Idiomarina
           baltica OS145]
 gi|85695287|gb|EAQ33224.1| Intracellular signaling protein (GAF,GGDEF,EAL domains) [Idiomarina
           baltica OS145]
          Length = 866

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 207/428 (48%), Gaps = 9/428 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ++I  +KK    +  +A  DNLTG+PNR  F + L   L            V+ +D+D+
Sbjct: 423 VSEIERRKKIEARLFHDAHHDNLTGLPNRALFTESLQQALAHQRRHPEHFFAVLFLDLDR 482

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG + GD+ L+ +++RI   ++  D++ARL G+ F I+L + ++     + A 
Sbjct: 483 FKNINDTLGHSAGDEFLLDVSKRIQTCVRENDLVARLGGDEFVILLDTMSSVDDAREIAK 542

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  S+  P  L   E    ASIG A    S+ +   +L++A+ AMY AK +G      F
Sbjct: 543 RIISSLNAPFILNGHEHYSGASIGIAICDDSQDSVERLLRDADAAMYEAKSQGRGRYVVF 602

Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  R+  + V  +  L  A  + + ++ +  I  +        EA ++W+      + 
Sbjct: 603 DNTMHRTLVESVKRERALRHARIDQDFFVEFEAIADISGRHKHASEAFLRWNIENN-RVK 661

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           +S+++ +AE+  +I  ++ ++L+R    +++      +    I +N++ + LL +     
Sbjct: 662 TSDYLALAEKTGLIVKLDQYLLKRCCEHLLN----TEVEAERIHLNLSVRHLLKSGYIRQ 717

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++ +   +P+++ L FSE+ +  N +RS   L RL + G  L +D FG     L +L
Sbjct: 718 LLNIVERYKVNPAQLVLEFSETALTQNDKRSVASLRRLSQAGFKLVIDHFGRGAGPLQFL 777

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PF  +K +   +     + +  A+LR +  +   +E  + A  +  E     L  +G
Sbjct: 778 YNYPFSKLKLDQDYVQRLETSTRARAMLRHVATLCDELEIELYAAGVKNESLANILCELG 837

Query: 932 CDYIQDSH 939
            ++ Q ++
Sbjct: 838 VEFGQGNY 845


>gi|37676430|ref|NP_936826.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37200972|dbj|BAC96796.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 660

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 197/444 (44%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K + +        D+ TG  NR +    L  +LD      +    V+ I     
Sbjct: 209 QEIDRRKAAEQQAHYQKHHDHGTGFLNRSALEQHLQRMLDEW-RLGDSSLVVIHIGFTNA 267

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G A+ DD+L     +IG +     I  R S +   I + +++ +  + +    
Sbjct: 268 RSIQTKYGFALLDDLLKIYRNQIGVIESVDSITGRPSSHDLVIAIRADDVTDILDNLLNR 327

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +      + E E  + A IG A   S+  ++ ++L++A  AM  +K  G  +     
Sbjct: 328 IINAGQRGFKVGESEAHLHAFIGLAVADSTTESAQQLLRHANQAMVLSKDSGQQYAYFSA 387

Query: 697 VSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +        I+  L  AV N +L L + P +     + +G EAL++W HP  G+IS+ 
Sbjct: 388 THADALLHHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNE 447

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W     +    + +N+++  L +    E +Q
Sbjct: 448 ALIHMAEQNGLIFEVGAFVLRSAIEKAKEWSA--IVEHFRVAVNVSAIQLKNPLFAEQVQ 505

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L RL + G++L+LDDFGT  +  SYL  
Sbjct: 506 ELLIAYQLPAQYLELEVTESGLISDEVVARATLERLHEFGVTLSLDDFGTGYASFSYLKK 565

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      E+   I+RSII +AK ++  ++ + I  ++    L R GCD
Sbjct: 566 YPFDAIKIDKSFVQHIDKSEEDKEIIRSIIHVAKKLDLEVVMEGIESDLQEDFLIREGCD 625

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+  +  ++ L  + 
Sbjct: 626 IGQGFLYGKPMPGSEFVQGLYSQN 649


>gi|197104018|ref|YP_002129395.1| GGDEF family protein [Phenylobacterium zucineum HLK1]
 gi|196477438|gb|ACG76966.1| GGDEF family protein [Phenylobacterium zucineum HLK1]
          Length = 552

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 143/555 (25%), Positives = 252/555 (45%), Gaps = 36/555 (6%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   +W W+  +DR+  T      LGL   +               DR     IL 
Sbjct: 16  ALGAADVALWVWEPEKDRLRLT-GATRALGLGPLAPDCSSAALRALSLPQDRVLAEDILR 74

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             V    G +    R+R A     W     R +    G  +R  G+         + E  
Sbjct: 75  --VQPPGGEVAVRLRMRGA-GVCIW-----RGVWLEEG--VRAAGVV--------APETK 116

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              + QD LTG+ +R+SF+ R    L      +     ++V D+D+ +++N+ LG    D
Sbjct: 117 FAASDQDTLTGLLDRRSFIHRARERLQSPGPHE-----LIVADLDRLRRLNEALGHERAD 171

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL +L  R+        +LAR+  + F  +  +E++         A+R+++  P+ +  
Sbjct: 172 LVLAALGSRLAAAFPPGALLARIGEDEFAALCAAESSPG-----PEALRRALEQPLRVAG 226

Query: 650 REITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
            +I  T SIG              E+L+ AELA+  A+  G     ++  S       R+
Sbjct: 227 FDIHPTLSIGAVEAEGGDEAPEAAELLRRAELAVEAARSHGRGGAAAYGRSLETDGLSRL 286

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A++  EL   Y PI+RL    + G EAL++W HP+ G +   +F+ + +E+ 
Sbjct: 287 ALEGDLKGALKRGELAPFYQPIVRLSTGALSGFEALVRWRHPRRGLLMPEQFLPLCDEMG 346

Query: 766 MIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYS 824
           ++  I   M+   AR + +WR +      + + +N+++ ++   +L E + A+  +T   
Sbjct: 347 IMSEIGAMMMREAARQLAAWRRRHRAAGELSVSVNLSTGEIDRPDLVEDVLAIRRETDLP 406

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +KL  +ES VM +P+R+ + L  LR  G +L LDDFGT  S LSYL  +PFDT+K +
Sbjct: 407 PGALKLEVTESDVMRDPDRAAVTLRNLRAAGAALALDDFGTGFSSLSYLTRLPFDTLKID 466

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +      E    I+ S++ + +++   ++A+ +      ++L  +GCDY Q    A 
Sbjct: 467 RYFVRTMATNEGSTKIVSSVVKLGQDLSMEVVAEGVENAGMARQLLALGCDYGQGFGYAP 526

Query: 943 PLGFNSILKLLKERF 957
            L        L E +
Sbjct: 527 ALSAQEAEVYLNESY 541


>gi|225567985|ref|ZP_03777010.1| hypothetical protein CLOHYLEM_04058 [Clostridium hylemonae DSM
           15053]
 gi|225163273|gb|EEG75892.1| hypothetical protein CLOHYLEM_04058 [Clostridium hylemonae DSM
           15053]
          Length = 866

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 95/438 (21%), Positives = 193/438 (44%), Gaps = 14/438 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +    I+     D+LTG+ +++ F  R+   L+    +      ++  DI+ +K +ND
Sbjct: 124 RLRETAAIINQFQFDSLTGLYSKEFFYRRVKETLE---QNPGKEYDILCSDIENFKLVND 180

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G+  GD +L S+     +L+    I  RL  ++F  ++    +          M    
Sbjct: 181 IFGVPAGDRLLGSIAAIYTKLVGEKGICGRLHADQFACLMERRYDYADAFFVQADMELGR 240

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
              +             G  +     +   +M   A LA  + K + G H   +      
Sbjct: 241 TSNMR------NTVMKWGIYAVEDRTLAVEQMCDRALLAARNIKGQYGKHYSRYDDELRN 294

Query: 701 -RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I + +  A+   +  +   P   +  + + G EAL++W+HP+WG  S + F+ 
Sbjct: 295 KMLHEQAITDIMEEALSEEQFVIYLQPKYSISKDRLAGAEALVRWEHPEWGFQSPAAFIP 354

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E    I  ++ ++ ++    +  W D+   P I + +N++  D+   +L E +   + 
Sbjct: 355 LFERNGFITKLDQYVWKKTCAVMQEW-DRKGYPQIPVSVNVSRADVYQVDLAEVLMETVR 413

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +PSR+ L  +ES    +PE+    +  LRK+G  + +DDFG+  S L+ L  +P D
Sbjct: 414 RYGIAPSRLHLEITESAYTEDPEQIIDTVRHLRKLGFIIEMDDFGSGYSSLNMLNQLPLD 473

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +   T K     IL  I+ +A+ ++ +++A+ +     ++ L  +GCD++Q 
Sbjct: 474 ILKLDMKFIQSETAKPIDKGILGFIMGLARWMKLSVVAEGVETREQLERLREIGCDFVQG 533

Query: 938 SHVASPLGFNSILKLLKE 955
            + A P+       LLK 
Sbjct: 534 YYFARPMPCTDFEALLKR 551



 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 13/180 (7%)

Query: 519 ITEQKKSLEGILCNAF-----QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           I   +++L      A      +D LTG+ NR+                ++    V + D+
Sbjct: 688 IHAMRRTLSREREQALQEEAGRDFLTGLLNRRGLN-----ASARLVRKEDAPMAVYLFDL 742

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D  K+IND  G   GD ++      + E  +  DILAR  G+ F  ++   ++       
Sbjct: 743 DDLKQINDTYGHEYGDRLIKKFGTLLSERTRSCDILARFGGDEFIAVIKQMDSRASALKK 802

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +  +          E   T+  G  +   + I  + ++  A+ A+Y AK        
Sbjct: 803 GEEICSAFR---EGELTEQFATSCTGGVAIWDADIPIANIIVEADKALYWAKRSRKGGCC 859


>gi|145223327|ref|YP_001134005.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
 gi|145215813|gb|ABP45217.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
          Length = 774

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 132/736 (17%), Positives = 264/736 (35%), Gaps = 51/736 (6%)

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
           +  +    + + ++ +L+          RW           +         S       A
Sbjct: 52  DTALQFGAAILTVAGALLAVTRTDGARRRWRLLYLASMGCWLIAQLFRVTGSIGVGNTVA 111

Query: 309 SIARITLASIVLYYTYFIIYHGMKG-----YERAVLLIPAWILIFIWFIGLWM---AITK 360
             A           +   +    +            L        I  +   +    +  
Sbjct: 112 DFAATATFLCCPVLSLVALILLGRSGGVVVNPPRGPLRQTATTNVIDGLVAGLSFAILAG 171

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVW 419
                    A    LV + + I   + + ++        +  D +R            ++
Sbjct: 172 MGGFLHQLTATSPDLVNMGLRITLGLTELMVVGTAVVVAMLYDVDRPYRSTY------LF 225

Query: 420 DWDIVRDRVTTTPDIA-----TILGLASGSM---HGPIRNWLPYIHINDRDNFRTILDSF 471
              +    VT             +G+  GS+    G +       H   R + R     F
Sbjct: 226 ---LAGGVVTVASAYRVGVYLEFIGVDGGSLWGGVGFVAGQWMITHALLRTSERDTEGDF 282

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMII---RIRPM--SNSNGDILRY-IGIANDI---TEQ 522
              R   ++                      RP+    + G +L   +     I     Q
Sbjct: 283 AYRRTDWVRLILPYAGFFGTAVLFAFHVVTGRPLGLFAAYGAVLMVFLVTVRQILVTRAQ 342

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 +      D LTG+PNR  F +RL           +    ++ +D+D +K++ND 
Sbjct: 343 WALTRRLYWAVRHDPLTGLPNRILFSERLERA------ARDRDFVLIFVDLDDFKEVNDR 396

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD++L ++ RR+   L   D LAR+ G+ F ++     +  ++   A  +R ++ 
Sbjct: 397 YGHAAGDELLCAVGRRLSGCLADGDTLARIGGDEFAVLAR--ADRDRLDQVADRLRLALR 454

Query: 643 MPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            P  +    + VTAS+G     ++    T  ++L++A+++M   K +G +    ++ S+ 
Sbjct: 455 SPFMVQGSSVRVTASMGVVGPEATGLPQTPDDLLRHADISMLAGKRQGKDTAVVYQASTR 514

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 I             +LVY  I+ L +E  V +EAL +W  P    ++   F+  
Sbjct: 515 TPADFPIALREAEGAVPQGFHLVYQHIVSLPEEVPVAVEALARWTAPNGIRVAPETFVAT 574

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +  A++  +L+   R+I +         + + IN+ +  L      E ++  +++
Sbjct: 575 AEAAGLGAALDALVLDLACREISA-----AGIDVDLHINVGAARLGSTGFDENVRRTLAR 629

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P R+ +  +E+V + +   +   + RL  +G+ + LDDFG+  + L+YL  +P   
Sbjct: 630 YGIEPRRLVIEITETVPIVDIADAAAQIRRLAALGVRVALDDFGSGYNSLTYLHALPVHI 689

Query: 881 VKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           VK + SL  G+     +A+ RS++ +   +   +IA+ I        L   GC + Q   
Sbjct: 690 VKLDRSLAAGADPAHDLALYRSVMSICTGLGLLVIAEGIETRAQADNLQDAGCRFAQGHL 749

Query: 940 VASPLGFNSILKLLKE 955
              P+    I    + 
Sbjct: 750 FGRPVPARDIGNFRQN 765


>gi|15601540|ref|NP_233171.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|147672530|ref|YP_001215562.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153820195|ref|ZP_01972862.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153823219|ref|ZP_01975886.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227812351|ref|YP_002812361.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506059|ref|ZP_04395568.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229510084|ref|ZP_04399564.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229516357|ref|ZP_04405804.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229605591|ref|YP_002876295.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254849945|ref|ZP_05239295.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255746458|ref|ZP_05420405.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262148957|ref|ZP_06028104.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262168074|ref|ZP_06035772.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|9658209|gb|AAF96683.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126509259|gb|EAZ71853.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519258|gb|EAZ76481.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146314913|gb|ABQ19453.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227011493|gb|ACP07704.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|227015155|gb|ACP11364.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229346238|gb|EEO11209.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229352529|gb|EEO17469.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229356410|gb|EEO21328.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229372077|gb|ACQ62499.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254845650|gb|EET24064.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255736212|gb|EET91610.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262023317|gb|EEY42020.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262031235|gb|EEY49852.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 627

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 196/444 (44%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|299534546|ref|ZP_07047878.1| sensory box/GGDEF family protein [Lysinibacillus fusiformis ZC1]
 gi|298729919|gb|EFI70462.1| sensory box/GGDEF family protein [Lysinibacillus fusiformis ZC1]
          Length = 335

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 84/327 (25%), Positives = 157/327 (48%), Gaps = 6/327 (1%)

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           KI   A  +   +  P  +  +E  ++ SIG +   +       +++ A+ A++  K  G
Sbjct: 6   KIERTANLIMDVLKQPFMIDGQEYFISVSIGISLSPADGKDIETLVRKADKALFSVKEHG 65

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +H   +R            ++  L  A+E +EL L   P + L +  I   EAL++W++
Sbjct: 66  RSHYRYYREDMTAIFPNEALMEAHLRRAIEFNELSLHLQPQMDLANNSINSFEALLRWNN 125

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            K+G +S ++F+ IAE   +I  I  ++++ + R    W+ +    P+ I +NI+ K   
Sbjct: 126 RKFGFVSPAQFIPIAEASGLIIEIGDWIIDEVCRYQKEWQSK-GYRPVRIAVNISPKQFR 184

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  ++  + K    P  +++  +ES  M N   +  +L  L+++G+ +++DDFGT 
Sbjct: 185 KENFARKIKTTLKKYGVPPELLEVEITESS-MTNVHETFSILTELKQLGVYVSVDDFGTG 243

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   P D +K + S +      +K  AI+++II M+ N+   +IA+ I   I +
Sbjct: 244 YSSLSYLKRYPIDIIKIDQSFIADIAKDDKNEAIIKAIISMSHNLGLEVIAEGIEEPIQV 303

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
             L R  C   Q      PL   +I++
Sbjct: 304 DFLKRHRCQKGQGYLYNKPLPVETIVQ 330


>gi|310826196|ref|YP_003958553.1| hypothetical protein ELI_0574 [Eubacterium limosum KIST612]
 gi|308737930|gb|ADO35590.1| hypothetical protein ELI_0574 [Eubacterium limosum KIST612]
          Length = 972

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 190/435 (43%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           KS + I    ++D LTG+ N   FL    ++L  +         ++  DI+++K IND  
Sbjct: 533 KSNQQIQNLLYRDTLTGLDNLDKFLAECGSLLKSAPEGG---YALIYSDINQFKTINDRY 589

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L +  + I E ++  +  AR+S + F ++L    +   +      ++K+   
Sbjct: 590 GFTAGDQLLRAYAQIIQESVQEGEYCARVSSDNFVLLL-KYRDWETLCTRMTDIQKATDS 648

Query: 644 PINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            I        V  + G      + K     ML  A  A   AK+   + +  +     ++
Sbjct: 649 WIQRTGFPAPVLTAFGVYLVDKAEKQDVQLMLDLANYARRSAKNTSKSAIVLYDRQMRQN 708

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +   + + L  A+   E    + P + ++  EI+G EAL++W+HP  G ++   F+ +
Sbjct: 709 TLLRKELTDRLSAALSAHEFVPYFQPKVNMITGEIIGSEALVRWNHPDRGLLAPGAFIPV 768

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   I+ I+ ++ E +   + SW D+   P   +  N +S     +   + + AL   
Sbjct: 769 FEENGSIEEIDWYIYEAVCYTLRSWMDRGL-PVYPVSCNFSSIHFDHSNFTDRITALADL 827

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +ES+++ +P+R    +  LR+ G    +DDFG+  S L  L  +    
Sbjct: 828 YAIPHRLLELEITESIIVTHPKRVASQIASLREKGFMTAIDDFGSGYSSLGQLEQMAARV 887

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       +   ++ +I+ +A ++   I+ + +        L R+ C Y Q  
Sbjct: 888 LKLDRSFVQRGMLDSREQTVIANIVNLAHDLGMRILCEGVETRQQANILIRLDCIYAQGF 947

Query: 939 HVASPLGFNSILKLL 953
           + + P+      ++L
Sbjct: 948 YYSKPVPLEEFEEML 962


>gi|304410938|ref|ZP_07392555.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|307304891|ref|ZP_07584641.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|304350835|gb|EFM15236.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|306912293|gb|EFN42717.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 739

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 224/519 (43%), Gaps = 22/519 (4%)

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +    +   +       L        G+   E  +++   Q  W+ +    +      + 
Sbjct: 221 DLFDMVREEEHAMLTDTLHVVREGVLGQAWCELPLKSIH-QLAWLKLSFSQICGDKDTL- 278

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + IA D++E+ +  + +  +A  D LTG+PNR  F   L  +L      D++   V  
Sbjct: 279 --VMIAEDVSEKYRLADELSFHANYDALTGLPNRLHFEALLENLL---HGHDDMPICVAF 333

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D+++ IN++ G   GD +L  +  R+ +L++  DI+ARL G+ FG IL+   N    
Sbjct: 334 LDLDQFQVINNISGHQAGDKLLCQVALRLKQLVRKGDIVARLGGDEFG-ILMHYCNVDSA 392

Query: 631 ADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              A  +   +         R   V+ S+G A           ++  A+ A   AK +G 
Sbjct: 393 KQIAKRICTQLANHEFIWEGRSHNVSVSMGIAKLDKKAADIYTVMSQADAACRLAKDQGR 452

Query: 690 NHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
           N    +  S  + +R+  +     D+  A+  ++  L +  I+ L  EE  + LE L++ 
Sbjct: 453 NGWHLYSASDPKMNRLYTEMMASVDIVGALALNQFELYFQSIVPLNREESGLHLEILLRM 512

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S + F+  AE   +   ++L++++ + +      D      + + +N+++  
Sbjct: 513 VQANGTIVSPAIFLPAAERYNLASKVDLWVIDNLLKWGGCHLDIWQQLDL-VSVNLSATS 571

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D E    ++  +        ++ +  +E+  +   +++  LL  LR +   L LDDFG
Sbjct: 572 LGDFEFMNWLEMRLMAEPELVDKLCIEITETAAVSQLDQATKLLDILRPLNCKLALDDFG 631

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S  +YL  +  D VK +G  +    E     AI++SI  + +++   ++A+ +  + 
Sbjct: 632 AGFSSFAYLKRLNVDFVKVDGQFVVNICEDSADQAIVKSICQLGQDMGFDVVAEFVESQD 691

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK-----LLKER 956
             +EL  +G DY Q   +  P+    +        L++R
Sbjct: 692 IGRELQILGVDYAQGYAINKPIRLAELQSGLSQPWLEKR 730


>gi|226942092|ref|YP_002797166.1| hypothetical protein LHK_03180 [Laribacter hongkongensis HLHK9]
 gi|226717020|gb|ACO76158.1| Predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Laribacter hongkongensis
            HLHK9]
          Length = 1113

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 117/568 (20%), Positives = 235/568 (41%), Gaps = 44/568 (7%)

Query: 407  QSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASG----SMHGPIRNWLPYIHIN 459
              LA      + D V   D     +     +  + G A       +   +R+    +   
Sbjct: 559  LRLAAHVQEHTPDAVLICDAAGRLLKANRAMQRLTGWAPEVLVEELLADLRSDAYPVPPA 618

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            +R                  + E   R           R  P+ +  G++   +   +++
Sbjct: 619  NR----------------SWEGECHYRTLSGVPLACWQRQSPVLDEYGNLSYLLVTLSEL 662

Query: 520  TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            +E+++    I   A  D+LTG+ NR + ++RL  +L  +    ++   VM +D+D++K+I
Sbjct: 663  SERQRQEARIRYLAEHDSLTGLYNRAALIERLGDVLAQARRQPHV-GAVMYLDLDRFKQI 721

Query: 580  NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            ND LG   GD +L+ + RRI  +++  D + R+ G+ F ++L         A  A  +  
Sbjct: 722  NDTLGHEAGDALLIEVARRIRSVVRTGDAVGRMGGDEFVVLLARLEYPRDAAAVADKLLA 781

Query: 640  SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
            ++  P  L  + +   ASIG A +      +  +L++A+ AMY  K +G    + F    
Sbjct: 782  ALLEPFVLSGQRVESPASIGVAMFPQDGEDADTLLRHADAAMYDVKTQGRGRWQFFTSAL 841

Query: 698  SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S  ++R   +  L  A+E  E  L Y  I      E + +EAL++W  P    + +  F
Sbjct: 842  QSQVANRRAREAMLTRALERREFVLEYQLIYGNPVREPLAMEALLRWHTPAGERLPAQAF 901

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE++ +   +  + L+ + + +  W +     P+ + IN+ S+   D  L   +   
Sbjct: 902  IDLAEDMRLALRLTRYTLDLVGQQLAGWLEAGL-VPVPVAINLTSRQFHDPLLVTHVAET 960

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LG 874
            + +       I+   +ES +  + E+SR  L RL ++G+ + +D FG     +     L 
Sbjct: 961  LREHRLDGQWIEFEVAESALFADLEQSRKQLARLAELGVGVAVDRFG---GDIRRWFELA 1017

Query: 875  YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN-----IETTIIAKDIYGEIDIKELTR 929
              P   +K   S++   +            MA +     +   +    +  + D+    R
Sbjct: 1018 DAPLTRIKVECSVLAELSGNDRG------RMALSAWQGVLGRPLAVTGVESDDDLACAER 1071

Query: 930  MGCDYIQDSHVASPLGFNSILKLLKERF 957
            +G   +Q     +PL    + ++L++R 
Sbjct: 1072 IGSQAVQGWVCQAPLNGEQMAQVLRQRQ 1099



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            + H +     ++ +  DGER    A+  +     D D+ RDR      +A ++G     
Sbjct: 413 TVAHDIDQLVRAESLARDGERSIKEALARAQIGYVDLDLARDRAVGNSVMAEMMGYPDDG 472

Query: 445 --MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +    ++W+  +H +DRD  R    + +  R      EFR+   D  + W++  + P+
Sbjct: 473 AVLSPIPQDWIGRVHPDDRDMVRLRYRNLMAGRAPIDGLEFRLEH-DRDWRWVMATLVPI 531

Query: 503 SN-SNGDILRYIGIANDITEQKKSLEGILCNAF 534
               +G  LR +G+  D+T    +   +   A 
Sbjct: 532 ETLPDGRALRVLGVYVDVTRLHLATAELRLAAH 564



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 84/249 (33%), Gaps = 12/249 (4%)

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIP 342
            +   +  A +  +  +S+         A +    +   +   +++  ++   R V L+ 
Sbjct: 184 SWAMEAERAAVLTIGVVSWSAAAWLEGPAPLVSQLVSFGFVPLVVWTAIRLTLRDVGLLT 243

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
              ++  + +G+  A  +++            ++L++ L      +H        +    
Sbjct: 244 LLAVLPFYVLGVAPAGLEQIGLATGSGTGFVVMLLVLYLHDSEQQRHRQERLRRQEMRQL 303

Query: 403 DGERQSLAVLGSGDI----VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-H 457
              ++ + +  +  I    V      +  V     +A + G    S  G     +    +
Sbjct: 304 RRAQRDIILQAADMIPSAVVLTRLSDQTIVYANEALARLFGYPRASFIGRTSLEMGIWNN 363

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +DR      + + V        +   +R AD     + ++   ++   GD    + +A+
Sbjct: 364 PDDRHELLARMHAPVPQP-----FNCWMRRADGTRFCIELQSSRVTW--GDSAYMLTVAH 416

Query: 518 DITEQKKSL 526
           DI +  ++ 
Sbjct: 417 DIDQLVRAE 425


>gi|163758632|ref|ZP_02165719.1| hypothetical protein HPDFL43_14452 [Hoeflea phototrophica DFL-43]
 gi|162283922|gb|EDQ34206.1| hypothetical protein HPDFL43_14452 [Hoeflea phototrophica DFL-43]
          Length = 566

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 93/415 (22%), Positives = 188/415 (45%), Gaps = 16/415 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG  NR+ F+    ++L++          + ++DID +K++ND  G  +GD VL  
Sbjct: 136 RDALTGALNRERFVTATKSVLEVRGR--KRFAALFLVDIDHFKQVNDTHGHPIGDRVLCF 193

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
             +++         + RL G+ F + +   +               + +A  +++  + +
Sbjct: 194 FAQQLEASF-PDGWVGRLGGDEFAVFVEHSDPITEAFAQKRCSEFVERLAQGLDIGTQRL 252

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710
            V+AS+G A       T   ++ NA++A+Y +K  G      +  +      +   +  +
Sbjct: 253 MVSASVGIAMAPRHGKTWGALVANADMALYASKKNGRAQSTMYAEAMLTDVRNEKTLMRE 312

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+    L + Y PI+ + + ++V  EAL++W H   G I+   F+ IAE   +I  +
Sbjct: 313 LRAAILLKHLRVAYQPIVGV-NGDLVAYEALLRWHHSLRGVITPDVFIPIAERAGLISDV 371

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++ ++  D+         P + + +NI++  +   +L + +  ++S+T   P RI L
Sbjct: 372 GCYVVRQVCEDLEKL------PKVSVNVNISANQVAAPDLVDRLLGILSETGVDPCRIVL 425

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES  +     +   L  L+  G  + LDDFG   S  + L  +PFD +K + S +  
Sbjct: 426 EVTESASLICSADNAKRLSALQAHGFRIALDDFGMGYSEFNQLRMLPFDIIKIDKSFVNS 485

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                     + +++ +++    ++IA+ I  E D       GCD +Q  +   P
Sbjct: 486 LGNDVVTDVFVSAVVEISRRSGKSVIAEGIETEEDRLRALAAGCDCLQGFYFGKP 540


>gi|190891799|ref|YP_001978341.1| sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190697078|gb|ACE91163.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 753

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 102/452 (22%), Positives = 203/452 (44%), Gaps = 17/452 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKYKK 578
           ++  ++ + +   +  D LTG+PNR+     +  ++      D   R  ++ ID+D++K+
Sbjct: 309 SKLVRARQRLEHLSLHDALTGLPNRRF----VDQMISQPPRPDPQDRLILIHIDLDRFKE 364

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G A GD VL +   R+ +L    D+ AR+ G+ F +   S +   K A+ A  + 
Sbjct: 365 INDTKGHAGGDMVLQTTASRLADLTGPNDVAARIGGDEFVVASWSTDPEPKAAELARQIV 424

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFR 696
            ++   I +      V AS+G A  T S       ++L NA+LA+Y AK  G      F 
Sbjct: 425 DALQQTIFIDGAGYVVGASVGVAWETESARDRDLGQLLLNADLALYQAKKAGRGRAAVFT 484

Query: 697 VSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       + ++   A+E  EL   + P       +I G+EAL +WDHP+ G +  
Sbjct: 485 EELRSAAIHAKELADEFNQALERDELVAFFQPQFNANTLDIAGVEALARWDHPRKGLLGP 544

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+  AE+L     ++  +L++   ++  W       P  + +NI+++ L    L   +
Sbjct: 545 NAFLDAAEKLGRSGEMDKLILQKALFELTRWDGMGMQIP-RVSVNISARRLAQANLLAEL 603

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            AL      +  R+     E++     +     ++  ++ +GI + +DDFGT+ + +  L
Sbjct: 604 SAL----PAAKGRLCFELLETISFDELQPALNEVIPAIKALGIEIEIDDFGTEHASIISL 659

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                  +K +  ++     +  +  ++ SII + ++    I+A+ +      K L  +G
Sbjct: 660 LRFEPRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHAKILKDLG 719

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           C  +Q   +A P+  + +++  + +       
Sbjct: 720 CHLLQGYALARPMTSDQLIEFCRMKGTGTAKA 751


>gi|310826194|ref|YP_003958551.1| hypothetical protein ELI_0572 [Eubacterium limosum KIST612]
 gi|308737928|gb|ADO35588.1| hypothetical protein ELI_0572 [Eubacterium limosum KIST612]
          Length = 609

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 189/435 (43%), Gaps = 9/435 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T +++S + +    + D+LT +PN+ +F   ++    L +        ++ +D++ +K +
Sbjct: 168 TLERRSQQELERVFYTDHLTALPNQAAFE--ISAAEKLRSAAPGAYL-MIYLDLNNFKFV 224

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD +L+S +  +       +I A L  + F I+L        I D   A+  
Sbjct: 225 NDSYGYNAGDKLLLSFSATLKRFCNSNEICAHLHADHFAILLK--KREHVIEDLQTAVLA 282

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           SI     L   +I +T S G  +      + +  +  A +A+   +          +   
Sbjct: 283 SIESERELNLSDI-LTCSYGVYTIPDPDASIASCISKASVALKEGRSSQRTIAYYDQHLL 341

Query: 700 FRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +      +   +   +   E  +   P + L   E+ G E L++W+   +G +   EF+
Sbjct: 342 DKITNENKMTRWMHQGLSEKEFQIYLQPKVNLERSEVTGAEILVRWNSEPFGFLPPDEFI 401

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++ ++LE   + +      +    + + +N++   L  N+  +    + 
Sbjct: 402 PLFEKNGFIVDLDFYVLEATCQILKQSLKISPERTVVLSVNVSRVTLFQNDFIKRFVQMA 461

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +    P  +++  +E+V + +      +L +LR  G S+++DDFG+  S L+ L  +P 
Sbjct: 462 ERYGVPPKYLEIEITENVFIFDANTVEQILSQLRSYGFSISMDDFGSGYSSLNLLRELPI 521

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +  S   EK  AI++S++ MA ++   ++ + +      + L  + C   Q
Sbjct: 522 DVLKIDRIFLQESIRVEKAYAIIKSVVEMAHSLNMVVVCEGVETLEHAEFLKTIHCTVGQ 581

Query: 937 DSHVASPLGFNSILK 951
             + + P+  ++  +
Sbjct: 582 GYYFSKPIPLSAFQE 596


>gi|218440065|ref|YP_002378394.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218172793|gb|ACK71526.1| diguanylate cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 609

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 216/430 (50%), Gaps = 6/430 (1%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             + D+LT +PN+  F + L+  L  +  ++     ++  DI++ +KIN  LG ++GD+V
Sbjct: 172 QLYLDSLTQLPNKTLFREYLSIALGNARQNEK-PMAILYFDIEQLRKINQKLGESIGDEV 230

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L    +++   L+  DI+AR   + F I+L   N    +      +   +  P+ L ++ 
Sbjct: 231 LQEFGKQLKSCLRSGDIIARWEEDEFIILLPQINIRENVPKICQRILDHVKKPLQLEQQI 290

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKE 709
           + + ++ GFA +         +L+ A++++   K +       +    SS  S    ++ 
Sbjct: 291 LKIRSNFGFAIYPQDGNEEQSLLQKAQISLKKYKQQFSSKRFSQKTAHSSEYSKVAKLEL 350

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A++ +E  + Y P I + +++IVGLEAL++W++ ++G IS S+F+   E++ ++  
Sbjct: 351 LVQQALDKTEFSVYYQPQINIKNKKIVGLEALLRWNNAQFGEISPSQFIPWVEKVDLVIP 410

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++++ I +    WR+      + I IN++S  L    L + +   +S     P+ + 
Sbjct: 411 LTQWLIKTIGQQHQIWRNLGFR-DLPISINLSSAQLQQPVLLDLLTQSLSAIDLEPNLVI 469

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E  ++ NP+ S  +L  L+++GI   +DDFG+  + + +L   PF+ VK + SL+ 
Sbjct: 470 VEIREDTLLENPDNSFRVLYELKQLGIKGCIDDFGSGYTSVRHLQQFPFEQVKISQSLLA 529

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 +  +++ ++I + +     +IA+ +  +  ++ L ++GCD +Q      PL   
Sbjct: 530 TLKKFPQEFSMIAAVIALGQTFNLKVIAQGVETQKQLEILRQLGCDVMQGYLFTEPLNGK 589

Query: 948 SILKLLKERF 957
            I + L   +
Sbjct: 590 EITQFLSLHY 599


>gi|86139244|ref|ZP_01057814.1| GGDEF family protein [Roseobacter sp. MED193]
 gi|85824088|gb|EAQ44293.1| GGDEF family protein [Roseobacter sp. MED193]
          Length = 626

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 200/438 (45%), Gaps = 11/438 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  +     A  D+LT +PNR+ FL  L   +  +A   N    V  +D+D +K IN
Sbjct: 179 EANELGKENERLANLDSLTDLPNRRRFLAELEERIVGAAE-GNRSFAVGTLDLDGFKPIN 237

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD++LV +  R+ ++      +ARL G+ FGII   E +  ++      + ++
Sbjct: 238 DIYGHVAGDNLLVKVGERLSQIS-SDLFVARLGGDEFGIIFEGELSDSELRALGNRICET 296

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P         V  + G A +  +  T+  + ++++  +Y AK R       F     
Sbjct: 297 VEEPFEFENFIANVGGTCGIAKYPEAGTTAKLLFEHSDYVLYVAKERQKGKAVLFSEQHQ 356

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I  +L  A  + E ++ Y  ++       VG EAL +W  P  GN+  ++F+
Sbjct: 357 DEINETTGIMRELQKANLDEEFFVAYQFVVDSDTGLPVGAEALARWASPVLGNVPPTDFI 416

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+  ++  +   +L +   ++  W        +F+  N+++ D+   +    +  ++
Sbjct: 417 KNAEKTGVVSKLTETLLRKTLSEVSKWP-----GNLFVSFNLSAHDIGSPQNILRLSEIV 471

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            ++ + P R+    +E+ ++ +  R+   L  L+ +G  + LDDFGT  S LSY+  +P 
Sbjct: 472 RRSGFPPERLTFEITETALLRDLGRANETLKLLKSLGSKVALDDFGTGYSSLSYVQNLPI 531

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +    E     A++++I+ +  N++   I + +  +  ++ L  +G   +Q
Sbjct: 532 DKLKIDRSFLVDMEECSTSQAVIKTILDLCDNLDLDCIVEGVERQGQLELLRGIGNMKVQ 591

Query: 937 DSHVASPLGFNSILKLLK 954
               + PL     L  L+
Sbjct: 592 GYLFSKPLMSGDALTYLQ 609


>gi|154174345|ref|YP_001407632.1| signal transduction protein [Campylobacter curvus 525.92]
 gi|112802289|gb|EAT99633.1| putative signal transduction protein containing diguanylate
           cyclase/phosphodiesterase domain [Campylobacter curvus
           525.92]
          Length = 773

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 142/788 (18%), Positives = 299/788 (37%), Gaps = 84/788 (10%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYIT 286
               ++ I   F +  V L  G+ L     S +   S  +I L+        ++   +I 
Sbjct: 9   HQAAFLYIGVLFCAYAVVLNFGKQLYCDVTSILLNVSIALIMLYRLKMTKNLNSYWVWIV 68

Query: 287 FSGIACIAILFCMSFYYPMV------TASIARITLASIVLYYTYFIIYHGMKGYERAVL- 339
              I  +      + Y               ++      + +    +   ++  +  +  
Sbjct: 69  LGVIGWVVADVLWAGYNMSHENSSLEALFFIQVIYFIPFILFLAASVAIFIRSNKSGLWT 128

Query: 340 --LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
             LI A +++ I+    W  +  R  + ++       LV I + I    I  ++      
Sbjct: 129 QALIDAGVILMIYASFFWFVVFDRDLSFVLSTDFAFHLVYIFVDIVMFCIVFIVYFS--- 185

Query: 398 QGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             + +   R S  +  +   ++  +D+       +     +        +      L  +
Sbjct: 186 --VHTMKRRLSFFLCLAALGLFCVYDM-----YYS----VMTANGKDLTNTNYELVLELV 234

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR------------------ 498
                  F     + +  +RG ++ +FR    D     +                     
Sbjct: 235 -------FVLFFLAALHLKRGEVRLKFRKNREDFHRILINKLLLLFVVLAFAIVISGKID 287

Query: 499 ------IRPMSNSNGDILRYIGIAND----------------------ITEQKKSLEGIL 530
                 I  +  +   +   I    +                      + E  ++ + + 
Sbjct: 288 LSWGIFIMILMLAYAVLTHSISSVRNNQLLIAKEQNVKQKLDKMIEERVQELSQTNKRLK 347

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             +  D LTG  NR  FL +L  ++   A  +N+   +  IDI+ +K +ND  G  VGD+
Sbjct: 348 QLSEYDFLTGALNRPFFLLKLEEMIKTKALGENID--IYSIDINHFKSVNDSYGHYVGDE 405

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL  + + I  +L    +LAR  G+ F +++  +       +F   +  +I+ PI +   
Sbjct: 406 VLARVVKNIKSVLPKNSLLARFGGDDF-MVVAKQKGDGYFREFLTRLHAAISQPILIESY 464

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-IKE 709
           +I+++A IG ++  +S+I + +++  A +A+  AK         +            I+ 
Sbjct: 465 KISLSAKIGISTTATSEILAEDLIAQAGVALNSAKKNTLCEHVFYDDIKDMIQEQNYIEI 524

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L     + E  L + P   +  ++++G EALI+W+ P  G +S + F+ IAE+  +I +
Sbjct: 525 LLNSINFDREFRLNFQPQYLIEGKKLIGAEALIRWNSPIKGFVSPALFIPIAEQSSIINS 584

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++ +   + + +W  +     + I IN++ K + +      +   I +    P  + 
Sbjct: 585 IGKWVAKEAIKQMSAWNQKYA-TALKIGINVSPKQVDNVNFASDILGFIKEFNIDPRCVD 643

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E+ ++   E  + +LG   + GIS+++DDFGT  S +SY+     + +K    L+ 
Sbjct: 644 IEITEASLVNAEEIMQSVLGVFSQNGISISIDDFGTGFSSMSYIKKYAINKLKIAKELVD 703

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     +  SII +AKNI    IA+ +     ++ L   GCD +Q      P+   
Sbjct: 704 NIASNEIDKDVATSIISLAKNINVKTIAEGVEDATQLEILKSCGCDEVQGYFWGKPMSAA 763

Query: 948 SILKLLKE 955
              +L+K 
Sbjct: 764 EFEELIKS 771


>gi|229917956|ref|YP_002886602.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Exiguobacterium sp. AT1b]
 gi|229469385|gb|ACQ71157.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Exiguobacterium sp. AT1b]
          Length = 762

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 110/466 (23%), Positives = 216/466 (46%), Gaps = 16/466 (3%)

Query: 496 IIRIRPMSNSNGDILRYIGIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
            +RI+   N   +I       N++    +++ +  L  AF+D+LT +PNR +  +     
Sbjct: 301 RLRIQLHPNQQDEIEEMAISMNEVLDALEQTQKESLTRAFRDSLTRLPNRLAVEE----- 355

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           + +S  D      VM ID+D +++IND  G   GD +L     R+    K    +AR+  
Sbjct: 356 MFVSLPDTTRSIGVMGIDLDNFRRINDQFGQRTGDAMLTFFASRLM-FYKEDGFVARIGA 414

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +I         +      ++      +      +T++  I   +  +   +   M+
Sbjct: 415 DEFILIHPEWTTEELMIIANQLVKDLREWGLKQGMNHLTLSIGIDELTGPTHH-SYEVMM 473

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLM 731
              ++ ++ AK  G + + S+      S  +    ++ DL  A+ + E  L Y PI+   
Sbjct: 474 ARLDVVLHEAKASGKDQILSYHEIEDGSHYLQALEMERDLRHALRHDEFELYYQPIVSPQ 533

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             ++ G+EALI+W HP+ G +S   F+ +AE+L +I  +  ++L R   +I  + +Q   
Sbjct: 534 PFQVRGVEALIRWHHPQKGFVSPGVFIPVAEQLGLISDVGRWVLVRAITEIQEYAEQF-- 591

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ IN++ + +LD+   E ++  ++KT + P R+ +  +ES V GN    +  +  L
Sbjct: 592 -DLFLSINVSKRQILDDSFLEALEETLAKTGFPPHRLHVEITESEVGGNVYELQQFIQAL 650

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
           + IG+ ++LDDFG   S LSYL  +  D VK + + + G  E     A+L  +    + +
Sbjct: 651 KTIGVKISLDDFGVGTSSLSYLQSLRLDIVKIDQNFVKGIPENKFDRALLEGLYQTFQTL 710

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              I+ + +     +  +       IQ  H + P+  + +   L++
Sbjct: 711 GLEIVTEGVERPEQLAFVLEYSGSLIQGYHYSKPIPVDQLHLYLRK 756


>gi|241666725|ref|YP_002984809.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862182|gb|ACS59847.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 747

 Score =  365 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 98/436 (22%), Positives = 200/436 (45%), Gaps = 15/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   +  D LTG+PNR+ F+DR+ +               + ID+D++K+IND  
Sbjct: 307 RARQRLEHLSLHDALTGLPNRR-FVDRMIS--QPPRPRPQDCLIFIHIDLDRFKEINDTR 363

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD VL +   R+ +L+   D+ AR+ G+ F     S +   K    A  +  ++  
Sbjct: 364 GHAGGDAVLQATASRLADLVGPNDVAARIGGDEFIFASWSADPEPKATALARQIVDTLDQ 423

Query: 644 PINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
           P+ + +    V AS+G A  T         ++L NA+LA+Y AK  G      F      
Sbjct: 424 PLIIDDAACVVGASVGVAWETERALGPDLGQLLLNADLALYEAKKAGRGRAAVFTEELRS 483

Query: 701 -RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  + ++   A++  EL   + P       ++ G+E L +WDHP+ G ++  +F+ 
Sbjct: 484 AAIHSKELADEFKQALDRDELVAFFQPQFDANTLDLAGVETLARWDHPQKGLLAPDKFLD 543

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+L     ++  +L++   ++  W       P  + +NI+++ L    L   +  L  
Sbjct: 544 VAEKLGRTGDMDRLILQKALFELTRWDSLGMQIP-RVSVNISARRLAQPNLLAELSEL-- 600

Query: 820 KTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
               +  R+     E++   + +   + ++  ++K+GI + +DDFGT+ + +  L     
Sbjct: 601 --PIAKGRLCFELLETISFNDLQPVLKEIIPAVKKLGIEIEIDDFGTEHASIVSLLRFEP 658

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +  ++     +  +  ++ SII + ++    I+A+ +      K L  +GC  +Q
Sbjct: 659 RRLKIDREIIKPIVASPSQRRLVSSIIEIGRSQNIDIVAEGVETMDHAKILKDLGCHILQ 718

Query: 937 DSHVASPLGFNSILKL 952
              +A P+    +++ 
Sbjct: 719 GYALARPMTSEQLIEF 734


>gi|3128306|gb|AAC16158.1| potential nitrogen fixation positive activator protein [Rhodobacter
           capsulatus SB 1003]
          Length = 698

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 195/427 (45%), Gaps = 17/427 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LT +PNR +  + L ++        ++   V+ ID+ ++K+IND +G   GD  
Sbjct: 272 RARIDALTSLPNRFAMREHLDSL----RDSSDVDCAVLAIDLVRFKQINDTVGHLGGDAF 327

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI-ADFAIAMRKSIAMPINLLER 650
           LV    R+  +      LAR  G+ F ++  +  +  +I A+    + +    PI     
Sbjct: 328 LVEFAARLRAIADETAFLARYGGDEFFVVFSASRDLDRIVAEKCRQINRLSEQPILCNGV 387

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIK 708
              V +S G A      +   E+L+ A+ AMY AK R    V  +       D     I+
Sbjct: 388 SFEVLSSKGLAFEDRRGMEQEELLRRADRAMYSAKLRETLEVVRYDKRMESEDLDHKRIE 447

Query: 709 EDLCLAVENSE-LYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +L  A+   E L + Y PI+        +  EAL +W  P+ G ++   F+ +AE   +
Sbjct: 448 RELRRALAEGEGLEIHYQPIVPASLGAAPIRYEALARWTSPELGAVAPDRFIKVAEASGL 507

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +   +L+ +  D+             + INI+   L+     E   A++     +P 
Sbjct: 508 IMPLGWRLLDLVCADMRLMDQA------RVSINISPAQLMSRGFAEKFTAVVLSHGIAPW 561

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           RI++  +E +V+ +       L  L   G +L LDDFGT  + + YL  +PFD +K + S
Sbjct: 562 RIEVEVTEQIVVRDDATIEHELIALSHNGFTLALDDFGTGFASIGYLTQMPFDVLKIDRS 621

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    + +    ++RSI+ +A+ +E +I+A+ +  E +   L R+G D++Q  H   P 
Sbjct: 622 FVRSIEDGQQGMRMVRSIVGLARAMELSIVAEGVESEAEAVLLRRIGADFLQGYHFGRPA 681

Query: 945 GFNSILK 951
             ++ +K
Sbjct: 682 PVSAWIK 688


>gi|260903009|ref|ZP_05911404.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308108366|gb|EFO45906.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 787

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 194/462 (41%), Gaps = 19/462 (4%)

Query: 503 SNSNGDILRYIGIANDITEQKK-SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             +N +I R      D+ E+     +     A  D+LT + NR  F    T  L      
Sbjct: 309 LGTNDEIGRLSSRFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATRELA----S 364

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSG 614
                 V+ +D+D +K +ND  G  +GD++L   +  I    +        P   ARLSG
Sbjct: 365 PPSHLWVIYVDLDNFKYVNDKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGARLSG 424

Query: 615 NRFGIILISENNSLKIADF-AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           + F I+L S  +   I D  A  + K I            VTAS+G A +       +++
Sbjct: 425 DEFAILLSSNKDVGSIPDLLAKELLKPINNLSQTWANAFPVTASVGIAQYPQDGQDIAKL 484

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLM 731
           L NA+ AMY AK  G N    +        +    I+  L  +    E  LV+ P +   
Sbjct: 485 LSNADAAMYQAKRAGKNQYAYYSAELNLESQRRSQIERALRKSNVEDEFRLVFQPYMNNK 544

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D EI GLE L++WD    G +  +EF+ IAE+  +   I+ ++      +    R     
Sbjct: 545 DNEIEGLEVLLRWDAEGLGPVPPTEFIPIAEQAGLFDRIDRWVFANATEEYHHLRSIFGK 604

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + IN++S +L   E+ + +   +++    P  I+L  +E+        +   L  L
Sbjct: 605 -DIVLSINLSSAELNSLEMAQFIHKHVTRNGIKPECIELEITETFAAEQQGTAL--LDEL 661

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIE 910
            K+G  L +DDFG+  + L+ L   P   +KF+   + T        +++ II +     
Sbjct: 662 SKLGYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLLTLMNTNNGHVIKPIIELCHAQN 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            T+ A+ I  ++  K L+   CD++Q      P+    +   
Sbjct: 722 KTVTAEGIEHDVMHKWLSAYRCDFMQGYLFGKPMDKEQLSLW 763


>gi|28900943|ref|NP_800598.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153836713|ref|ZP_01989380.1| biofilm architecture maintenance protein MbaA [Vibrio
           parahaemolyticus AQ3810]
 gi|260366157|ref|ZP_05778617.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260879799|ref|ZP_05892154.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894473|ref|ZP_05902969.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809389|dbj|BAC62431.1| c-di-GMP phosphodiesterase A-related protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149750062|gb|EDM60807.1| biofilm architecture maintenance protein MbaA [Vibrio
           parahaemolyticus AQ3810]
 gi|308086383|gb|EFO36078.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           Peru-466]
 gi|308092157|gb|EFO41852.1| diguanylate cyclase/phosphodiesterase [Vibrio parahaemolyticus
           AN-5034]
 gi|308114908|gb|EFO52448.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|328470846|gb|EGF41757.1| c-di-GMP phosphodiesterase A-like protein [Vibrio parahaemolyticus
           10329]
          Length = 787

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 195/462 (42%), Gaps = 19/462 (4%)

Query: 503 SNSNGDILRYIGIANDITEQKK-SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             +N +I R      D+ E+     +     A  D+LT + NR  F    T  L      
Sbjct: 309 LGTNDEIGRLSSRFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATRELA----S 364

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSG 614
                 V+ +D+D +K +ND  G  +GD++L   +  I    +        P   ARLSG
Sbjct: 365 PPSHLWVIYVDLDNFKYVNDKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGARLSG 424

Query: 615 NRFGIILISENNSLKIADF-AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           + F I+L S  +   I D  A  + K I+           VTAS+G A +       +++
Sbjct: 425 DEFAILLSSNKDVGSIPDLLAKELLKPISNLSQTWANAFPVTASVGIAQYPQDGQDIAKL 484

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLM 731
           L NA+ AMY AK  G N    +        +    I+  L  +    E  LV+ P +   
Sbjct: 485 LSNADAAMYQAKRAGKNQYAYYSAELNLESQRRSQIERALRKSNVEDEFRLVFQPYMNNK 544

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D EI GLE L++WD    G +  +EF+ IAE+  +   I+ ++      +    R     
Sbjct: 545 DNEIEGLEVLLRWDAEGLGPVPPTEFIPIAEQAGLFDRIDRWVFANATEEYHHLRSIFGK 604

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + IN++S +L   E+ + +   +++    P  I+L  +E+        +   L  L
Sbjct: 605 -DIVLSINLSSAELNSLEMAQFIHKHVTRNGIKPECIELEITETFAAEQQGTAL--LDEL 661

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIE 910
            K+G  L +DDFG+  + L+ L   P   +KF+   + T        +++ II +     
Sbjct: 662 SKLGYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLLTLMNTNNGHVIKPIIELCHAQN 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            T+ A+ I  ++  K L+   CD++Q      P+    +   
Sbjct: 722 KTVTAEGIEHDVMHKWLSAYRCDFMQGYLFGKPMDKEQLSLW 763


>gi|153001702|ref|YP_001367383.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151366320|gb|ABS09320.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 497

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 99/418 (23%), Positives = 200/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT+++         + T+++IDI +++ +ND+ G   GD +L   
Sbjct: 82  DKLTGLVNRVGLKRTLTSMM------PLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 135

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +         ++      ++    +P ++    ++V 
Sbjct: 136 AERLNTLSLSPRLIARLNGDEFCLYYEQALTEEQLVHLRGRLQ----VPFSIKNTPVSVK 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG          +S+ML+  +LA+  A+H R      +      +   + I + L   
Sbjct: 192 LQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLRELRIIDSLPKG 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ +++Y+VY     +       +EALI+W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 252 LQRNQVYMVYQAKQDIATGRCFQVEALIRWEHDELGVISPGEFIPLAEYAGMIDLVSQWA 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      WR       + + +N++++DL    L + + A ++     P  + +  +E
Sbjct: 312 LDQVLAQQEKWRAAGIQ--LCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITE 369

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+ L +DDFGT  S L+YL ++P + VK + + +    + 
Sbjct: 370 STLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLKDLEQD 429

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I      + L  MG D +Q  + A P+    + 
Sbjct: 430 KPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKPMRAAELE 487


>gi|89056119|ref|YP_511570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Jannaschia sp. CCS1]
 gi|88865668|gb|ABD56545.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Jannaschia sp. CCS1]
          Length = 645

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 112/574 (19%), Positives = 224/574 (39%), Gaps = 29/574 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY---IHI--NDR 461
               V  + D +   D+    +   P     +G     M G       +   +    +D 
Sbjct: 69  MRAVVQHASDGLVYLDMSARILWANPAYCRTMGRTLEDMRGRRPQEFCFPPELKPSDDDI 128

Query: 462 DNFRTILDSFVGYRRGRLQYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +NF   L+        R     R+    + +  W    +       G+    +    D++
Sbjct: 129 ENFAFDLEDEEFQTLTR-----RLNVRKNGERFWHEFNLSVFETQEGEEYVILAT-RDVS 182

Query: 521 -------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
                  E K++   +   A  D LT + NR +FL     IL     ++  +  ++ ID+
Sbjct: 183 PQVAREEELKEAQSYLFHAAHHDALTALNNRAAFLTETDAILTT-DDEETRQLGLIYIDL 241

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND  G A GD +LV +   + +  +  D+L R+ G+ F +      +  ++   
Sbjct: 242 DHFKAVNDSNGHAAGDQLLVHVADAMRDTAREQDLLCRMGGDEFVMACPGVASFDELQHI 301

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A A+   I  PI+  +  +   ASIG A     ++T+ +++++A+ A+Y AK  G   + 
Sbjct: 302 ADALLDRIRTPIHWADLTLVCGASIGIALSNGERMTAEDLIRSADFALYEAKTPGAPRIA 361

Query: 694 SFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +       + +   + E+    ++N  +  ++ PI+     +I   E L +W       
Sbjct: 362 RYDAVLHERQVEENALMEEFVETLDNDGIRFMFQPIMDGRTGKIRSFETLARWRRKTGEV 421

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I+  +F+  A  L  +  I+   +      +   +       +    N +S+ L      
Sbjct: 422 IAPDQFLPYAARLNRMADIDFAAIRATTALVSDLQSDGYD--VRGAFNTSSEALAHPGFM 479

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL---LGRLRKIGISLTLDDFGTKCS 868
           + ++    +       +     E+   G           +  LR+ G ++ LDDFG   +
Sbjct: 480 DRLEFEAREAGLDTQSLVAEVLETTFFGADTTDNAAAARIVELREKGFAVYLDDFGVGYA 539

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS+LG +    VK + SL+   T  R    I  SI+ +   +    +A+ I        
Sbjct: 540 GLSHLGKLDVSGVKLDRSLIANVTHDRSARIITTSILRLCDELGVGTLAEGIESAEQADF 599

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           L + GC  +Q   +A P+  N+++ L+ +  P+ 
Sbjct: 600 LMQNGCYRLQGFGIARPMDRNAVISLIADGSPIT 633


>gi|312959186|ref|ZP_07773705.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
 gi|311286956|gb|EFQ65518.1| diguanylate cyclase [Pseudomonas fluorescens WH6]
          Length = 796

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 122/532 (22%), Positives = 227/532 (42%), Gaps = 29/532 (5%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA------------DNQF 492
           +  P+ + L      DR      L   V    G L    RV                  +
Sbjct: 278 LQSPLDHALESFAPLDRQFLGIALAVLVVSLAGALFLARRVSRPLIALVAAAGRIGSGDY 337

Query: 493 H-WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
              + +R     +  G + R           ++    +  NA  D LTG+PNR   ++RL
Sbjct: 338 RTPVRVRGH---DEFGLLARAFNAMQSGIAMRE--RQLAHNALHDPLTGLPNRALAMERL 392

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            + +            ++ + I+ Y+ IN+  G    +D+L   +R +   L   D  AR
Sbjct: 393 GSAISARR-----PVVLLYLGIENYRVINEGFGPQGVEDMLREASRCLSMSLLASDTAAR 447

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           ++G+ F ++L +     +    A  +   +  P  + + E+    SIG A++ +      
Sbjct: 448 IAGSEFLLLLEN-TEVDRAVARADRLYALLTEPQRIGDDELRHEVSIGIAAYPADGQQVE 506

Query: 672 EMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           E++  A +A + A    G   +           ++ +  DL  A    +LYL Y P + L
Sbjct: 507 ELISRAAIARHDAAAFPGYLQIYRQDRDLAHQRQITLIRDLRRAAVEGDLYLCYQPKLDL 566

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            +  +   EAL++W HP  G +S +EF+ +AE    + ++  +++E   R I  W     
Sbjct: 567 KNGHVGQAEALLRWQHPTLGLVSPAEFIPLAERTGSMASLTHWVIEAAIRQIAEW--TLR 624

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              I + +NI+  DL D++L   +  L+ +   + +++    +ES +M NP+++  +L +
Sbjct: 625 GLLIQLSVNISVDDLADDDLAIRVTTLLMQHDVAATQLLFEITESAIMHNPQQALRVLEQ 684

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKN 908
           LR  GISL++DDFGT  S L+ L  +P   +K + S +           I+RS I M+ N
Sbjct: 685 LRGCGISLSVDDFGTGYSSLAQLQRLPVQELKIDQSFVRNLDSTSGDGVIVRSTIEMSHN 744

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           +   ++A+ +  E  +K L    CD  Q   ++ PL   +  + ++      
Sbjct: 745 LGLKVVAEGVEFEPSLKLLRLWNCDTAQGYLISRPLDAMTFERWMRRERAPT 796


>gi|262173153|ref|ZP_06040830.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261890511|gb|EEY36498.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 616

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 207/465 (44%), Gaps = 28/465 (6%)

Query: 515 IANDITEQKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           IA+D+ E K+                  DNLTG+ NR    D+L +++  S        T
Sbjct: 156 IAHDL-ECKQMTARSQSLVNQLRHEISHDNLTGLMNRNDLADKLNSMIRCSQQH----FT 210

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +DID ++ IND+ G  +GD VL  +   I + L       R++ + F  +      +
Sbjct: 211 LAFLDIDGFRSINDLYGHYLGDLVLKFVADAIEKALSEEGHAFRVAADEFAFL----TTA 266

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +      A+   +A      +R I ++ SIG A +   K+T+ ++L NA LA+   K  
Sbjct: 267 HEPMKVCQAILNQLAQDYVDQDRRIKISVSIGIAKYGGEKLTADQLLFNASLALKECKRN 326

Query: 688 GGNHVESFRVSSFRSDRVM------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
              H+  +                 ++ +L      +ELY+V  PI++    +    E L
Sbjct: 327 HNTHIRFYDTLLSNQYYRRTQIIDALRHELSKPTNQTELYVVVQPIVKRNQPDWDYFEIL 386

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W     G +S  EF+  AE+  +I  +   +LE       +  +Q+    + + IN +
Sbjct: 387 TRWKSSSLGFVSPLEFIEAAEQSGLIVELGEHILELAC-IAKTELEQSLGHKVRLSINCS 445

Query: 802 SKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +L ++    E +   I K  +      +  +E+V++     +R +L  LR++G  + L
Sbjct: 446 ADELTNSNRYLEHLLRTIKKYGFRADEFTIELTETVLLSKAAEARSILTILRELGFKIAL 505

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+Y+   P D +K + + +          +++  II +A  ++  ++A+ +
Sbjct: 506 DDFGTGYSSLNYIHSYPIDCIKIDATFVHNLLTNHTSESVVWLIIQLANQLKLDLVAEGV 565

Query: 919 YGEIDIKELTRMGCDYIQDSHVASP-LGFNSILKLLKERFPLVKN 962
             +  + +L +MGC+ IQ  + + P L      +  +++ P + +
Sbjct: 566 ENQQALDKLYQMGCEQIQGYYFSKPDLPSMMAERW-QQQLPQISS 609


>gi|209549382|ref|YP_002281299.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535138|gb|ACI55073.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 760

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 196/448 (43%), Gaps = 17/448 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVMVIDIDKYKKINDV 582
           ++ + +   +  D LTG+ NR+     +  ++      D      ++ ID+D++K+IND 
Sbjct: 321 RARQRLEYLSLHDALTGLANRRF----VDQMISQPRRPDGEDCLILIHIDLDRFKEINDT 376

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD VL +   R+ +L    D+ AR+ G+ F     S N   + A+ A  +  ++ 
Sbjct: 377 KGHAGGDMVLQTTASRLADLTGPTDVAARIGGDEFIFARWSANPEPEAAELAKQIVDALQ 436

Query: 643 MPINLLEREITVTASIGFAS--WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            PI +   E  V AS+G A     +S     ++L NA+LA+Y AK  G      F     
Sbjct: 437 QPILIDGAEYVVGASVGVAWETEPASGRDLGQLLLNADLALYEAKKAGRGRAAIFTEELR 496

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   + ++   A++  EL   + P        I G+EAL +WDHP+ G +  + F+
Sbjct: 497 SAAIHSKELADEFNQALDRDELVAFFQPQFHADTLAISGVEALARWDHPRKGLLGPNNFL 556

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE L     ++  +L +   ++  W       P  + +NI+++ L    L   +  L 
Sbjct: 557 DAAERLGRSGDMDRLILHKALFELTRWDSLGMQIP-RVSVNISARRLAQANLLAELSGL- 614

Query: 819 SKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                +  R+     E++     +     ++  ++ +GI + +DDFGT+ + +  L    
Sbjct: 615 ---PAARGRLCFELLETISFDELQPALNEVIPAIKALGIEIEIDDFGTEHASIISLLRFE 671

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  ++     +  +  ++ SII + ++    I+A+ +      K L  +GC  +
Sbjct: 672 PRRLKIDREIIKPIIASPSQRRLVSSIIEIGRSQNIDIVAEGVETMEHAKILKDLGCHLL 731

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q   +A P+    +++  + +   +   
Sbjct: 732 QGYALARPMTSEQLIEFCRTKDKGLTQA 759


>gi|227821054|ref|YP_002825024.1| c-di-GMP phosphodiesterase A-related protein [Sinorhizobium fredii
           NGR234]
 gi|227340053|gb|ACP24271.1| c-di-GMP phosphodiesterase A-related protein [Sinorhizobium fredii
           NGR234]
          Length = 903

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 117/461 (25%), Positives = 210/461 (45%), Gaps = 15/461 (3%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCN-AFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +  G+I R      ++  Q      ++   ++ D LTGI NR  F   L   +   A   
Sbjct: 415 DEAGEIGRLTHNIRELHGQSAHSLRLVQQNSWTDTLTGINNRGRFNA-LAAGVVEEAVAS 473

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI--------GELLKFPDILARLSG 614
             + +++ IDID +K +ND  G  VGDD+L +L  RI              P ILARLSG
Sbjct: 474 GEKCSLLFIDIDNFKFVNDKHGHDVGDDLLKTLAVRIGQTVEAITRRRQLEPAILARLSG 533

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F +++ S      I + + A+         +  +   VTASIG A         +E++
Sbjct: 534 DEFAVLVRSNPGEGTIREISNAILALFDGGFEVSGKSYPVTASIGVAICPDDATNIAELI 593

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+ AMY AK  G N    F       R+    I+E+L     + +  LVY PI+ +  
Sbjct: 594 SNADAAMYQAKSGGRNRSSRFSRALHDKRTRLRQIQEELRGLDPDEQFRLVYMPIVNVR- 652

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            ++ G EAL++W  P  G ++  EF+ IAE   +   I+ +++ +   D    +      
Sbjct: 653 GQVTGCEALLRWHSPILGAVTPDEFVPIAESSGLFTKIDWWVINKAMSDCGQLKALFGQD 712

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + INI+S +L  + L + +    ++    P  I +  +E+  +   ++ R  +  LR
Sbjct: 713 TV-LAINISSAELHSHALGDYLSDCAARHQLEPQSIDIELTETFAVKISDQLRQNIDELR 771

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIET 911
             G  L++DDFG   + +  +     DT+K + +L+T  T    +++L++++ +    + 
Sbjct: 772 HKGFRLSIDDFGAGYTSIQQIIDYAADTIKLDRALVTNLTASHSLSVLKAVVALCHAKDM 831

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +I + +     +  LT  GCD  Q   ++ PL  + +   
Sbjct: 832 AVIGEGVDTPEKLAMLTAAGCDRFQGYLISKPLSLDDLAIW 872


>gi|225850670|ref|YP_002730904.1| ggdef family protein [Persephonella marina EX-H1]
 gi|225645280|gb|ACO03466.1| ggdef family protein [Persephonella marina EX-H1]
          Length = 656

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 216/564 (38%), Gaps = 49/564 (8%)

Query: 399 GIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +    E+ +L       + D +   D     V        + G +   + G        
Sbjct: 121 SLRKTEEKLNLYEKIFHEAQDGIAVIDSKGRYVIQNVSHRNLTGYSDEEIIGKTPAISIG 180

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                    + I+       +G+ +    ++  D     + + + P+ +  G  + Y+GI
Sbjct: 181 -----EKKLKQIIRKV--NEQGKFRGIVDLKRKDGTVLNIDLSVFPVKDRKGKTIYYVGI 233

Query: 516 ANDITE-------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             DITE        +     +    F D+LT +PNR   ++ +           +  P +
Sbjct: 234 KRDITEIIKREKELENLNRKLEKQLFTDSLTSLPNRLKLIEDIK---------GSSDPKL 284

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627
            + +I+ +K+IND  G  +GD++L  + R+I   +      + +LSG+ F I+   +   
Sbjct: 285 AIFNINSFKEINDFYGQEIGDELLKKVGRKINSYVDKDRYTVYKLSGDEFAILSDRDITM 344

Query: 628 LKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            + ++    + ++I   I +  E EI +  + G+A           ++  A++A+ +AK 
Sbjct: 345 DQFSNTIQRIIENIHEEIFICGETEIHIYMTAGYA------SGKERLISRADMALKYAKQ 398

Query: 687 RGGNHVESFRV---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              +     +           + + + +  A+  + + + + P+       +   E L++
Sbjct: 399 HKKSIQLYSKNLGIEKQYIHNITVMKKIKEALRKNMVTVHFQPVYNNRTGLVESYETLVR 458

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I    F  IA++  +   I   ++E I + I          P    +N++ +
Sbjct: 459 LKDTDGSEILPETFFDIAKKSPVYPEITAKIIETIFKKIK-------DIPHKFSLNLSVR 511

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           D+ + EL E +   +       + I     ES  + N       +  ++K+G  + +DDF
Sbjct: 512 DIENRELTERIFEFLKSY---RNDIIFEILESESIRNYRTVSQFIKEVKKLGAQIAIDDF 568

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S   ++  +  D +K + SL+           I+ +I+  AK +    +A+ ++ E
Sbjct: 569 GSGYSNFEFILKLDVDYIKLDSSLIKDIDRNINSQIIVETIVGFAKRLGKKTVAEHVHSE 628

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
              + +  +  D+ Q  +   P  
Sbjct: 629 EVFEVVKELDVDFSQGFYFGKPSP 652


>gi|229514228|ref|ZP_04403689.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229348208|gb|EEO13166.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 627

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 196/442 (44%), Gaps = 8/442 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLTEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
           D  Q      P+        L+
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLE 622


>gi|149926754|ref|ZP_01915014.1| putative signalling protein [Limnobacter sp. MED105]
 gi|149824683|gb|EDM83899.1| putative signalling protein [Limnobacter sp. MED105]
          Length = 666

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 198/421 (47%), Gaps = 15/421 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++D LTG+ NR      LT  L           ++++  ID    IN+VLG  V D VL
Sbjct: 241 AYKDQLTGLDNRAY----LTLALRERTQSAREPLSIVIWGIDNLDNINEVLGHDVADKVL 296

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           + + R+   + +   ++ARL GN F ++L  +     +      +++ +   + + + ++
Sbjct: 297 IKVARKASRICQENLVIARLEGNIFCMLLPRDLLESMLKK--HTLKRMLHGSLRVQDYQL 354

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDL 711
            + +  G A +         +++ AE+A   AK  R  + V   R+    ++R+ +   L
Sbjct: 355 DIQSHAGLAHYPEHGQCPETLMRRAEIARQLAKKTRQTSIVFEARLEQRSANRLELIAQL 414

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ + E  L + P + L    I   E L++W+HP  G I+   FM +AE+  MI+ I 
Sbjct: 415 RQAITDEEFCLFFQPKLNLRTNSINQAEVLLRWNHPVHGLIAPGAFMELAEQTGMIRDIT 474

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR-IKL 830
             +L++    I    +      I + +N+++ DL D+ L + MQ  + +     SR I L
Sbjct: 475 RLVLKQTYAII----NLCANQNIRLSVNLSAMDLEDSSLIDFMQH-LHRLQPDASRHIVL 529

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT- 889
             +ES  M +PE++  +L +L  +   + +DDFGT  S L+YL   P   +K + SL+  
Sbjct: 530 EITESAAMRDPEQALDILNQLAAMHFQIAVDDFGTGYSSLAYLKRFPVTELKIDRSLVQG 589

Query: 890 -GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    IL S I M   +   +  + +  + +   + ++G DY+Q   ++ P+ F+ 
Sbjct: 590 ADLDTDGQIILESTIEMGHIMGLLVTTEGVETQAEFDLVKKLGADYVQGFWLSKPMPFDE 649

Query: 949 I 949
            
Sbjct: 650 F 650


>gi|226307763|ref|YP_002767723.1| hypothetical protein RER_42760 [Rhodococcus erythropolis PR4]
 gi|226186880|dbj|BAH34984.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 768

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/738 (20%), Positives = 284/738 (38%), Gaps = 26/738 (3%)

Query: 212 VNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFM 271
           V R  + +    + W    ++ +  G    ++   SG L          +    +     
Sbjct: 24  VTREQIAVTFGVLPWAAAVHLVVTLGLTLYVIPPDSGPLPRLWPFLSGVIGLVGMCVGLA 83

Query: 272 YLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGM 331
             H+N             I   A++  +     +V   I   +   I+   +  I   G 
Sbjct: 84  I-HFNLIAPTYRMSYAFLIVEFAVVGILYSSLALVLYPILDDSGDLILTAASASITGAGA 142

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAIT-KRLDNDIIQPALVGGLVLIVILIGFTVIQHV 390
                  ++   W+L  +  +G+   +        I+   +V G  LI   I  +     
Sbjct: 143 VATAMLRIVGLTWVLSNLVILGVAFWLQPGPEFERILIGLIVYGAALIGGTIVVSGNLES 202

Query: 391 LATGYFSQGIFSDGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
                             + +      +GD VW+ D           +A+  GL S  + 
Sbjct: 203 RYRAELRAASERSV--VQMLLEDFEGNAGDFVWETDQKGKFNRIPTRLASEAGLDSAELQ 260

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           G    W               +D+ +      + +              +  W  I  RP
Sbjct: 261 GT--AWQDLFMELGTLRIPGGIDALMELQKARHTKTAFVDVLVPVRVHGEIRWWQISGRP 318

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
                 D   + G+ +D+TE K   + I+     D LTG+PNR SF   L  +L    T 
Sbjct: 319 RPGRTPDEFVWRGVGSDVTEVKLQSDEIVRMGRVDALTGMPNRHSFWTELERLLRDPYTS 378

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           ++    + ++D+D +K +ND LG  VGD VL  +  R+ E      + ARL G+ F I+ 
Sbjct: 379 ESG-LALAMLDLDNFKSVNDTLGHTVGDAVLREVADRLSEAGGMSQLFARLGGDEFAILF 437

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +S ++        +++  PI +    + +  SIG+        ++ EM+  A+LA+
Sbjct: 438 TDMGDSSQVRTLLGRYIETLHEPITVAGTRLEIGCSIGYYLPAELPSSADEMMGAADLAL 497

Query: 682 YHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           + AK  G   V  +R S          + EDL   V   +L L   P I ++  EIV +E
Sbjct: 498 FAAKESGRGAVREYRDSMKSVADRRARLLEDLGNTVAEKDLELELLPRIDVLSREIVAVE 557

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
             + W + + G ++S+EFM +A++  +  ++   + E          D      + + + 
Sbjct: 558 VRVVWHNARLGAVTSAEFMSVADDTGLAYSLGTTVFELACEAASRLPDH-----LRVAVA 612

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++ L      E +   + ++     + +L   ES V+ +  +SR  L  + ++G+SLT
Sbjct: 613 VSTRQLESEAFIEAVGDSLRRSDARAGQFELQLDESSVITD--QSRAALHAIAEMGVSLT 670

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           +D+FG   S L+ L  +PF  V+   S ++G+      IL +++ +   +   ++   + 
Sbjct: 671 VDEFGAGFSSLASLSGLPFTRVRIERS-ISGAAPGGRPILEALVDLVDALGMEVVVSGVD 729

Query: 920 GEIDIKELTRMGCDYIQD 937
            E  +K +   G   +Q 
Sbjct: 730 SEEQLKAVAAAGVRTVQG 747


>gi|288919114|ref|ZP_06413453.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288349458|gb|EFC83696.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 693

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/464 (21%), Positives = 200/464 (43%), Gaps = 30/464 (6%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             +T   +        A  D LTG+PNR +  +R    +  +      R  ++++D+D++
Sbjct: 194 RVVTRVGEGARQKEHEARHDGLTGLPNRTALAERAALSIAAAERT-GTRVGLLLLDLDRF 252

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG----IILISENNSLKIAD 632
           K++ND LG  VGD +LV    R+   L+  D++ARL G+ F      +    +      +
Sbjct: 253 KEVNDRLGHDVGDRLLVVAAARLAAALRPGDVVARLGGDEFAVLLPWLPPGADGRAVATE 312

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNH 691
            A  +R  +  P  +  +   +  S+G A +         + ++A++AMY AK  G G  
Sbjct: 313 VAGRVRGVVRAPYEIDGQFCDIDVSVGVALYPDHGADLPALSQSADIAMYAAKEHGLGVQ 372

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
               R +     R     +L  A+++ +L L Y P   ++D  +   EAL++W HP  G 
Sbjct: 373 AYGPRDARRARLRTRTTAELGYALDHGQLELHYQPQAEIVDGRVRRTEALLRWRHPSRGL 432

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE   +I+ I  + ++        W       P  + +N++ +DL D    
Sbjct: 433 LLPGVFVPLAESAGLIRPITSWAMDTALTQTARWHAAG--IPAAVALNVSPRDLRDPGFV 490

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             + + ++     P  +    +E  +  + + +   L  L  +G++++LDDFGT    L 
Sbjct: 491 GSVASALAANNLPPGALTFEVTERALTADGDGAARALRDLVDLGVTVSLDDFGTGLISLD 550

Query: 872 YLGYIPFDTVKFNGSLM--TGSTEKRI--------------------AILRSIIPMAKNI 909
            L  +P   +K + +++   G+  +                      A +R+++ MA ++
Sbjct: 551 ALRRLPIGEIKIDRTVIGRLGADPRDAVTMGLADGETVAWEAATREVAFIRAVVRMASDL 610

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++A+ +    +  +L   G D  Q  HVA  L    + + L
Sbjct: 611 GMRVVAEGVETPTEWCQLAGFGADAAQGWHVAPALPAALVTRWL 654


>gi|262163889|ref|ZP_06031628.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio mimicus VM223]
 gi|262027417|gb|EEY46083.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio mimicus VM223]
          Length = 791

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 204/444 (45%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR  F  ++   L LS   D     V+ ID+D +K +
Sbjct: 326 TELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L++    +    
Sbjct: 384 NDKYGHQIGDSLLVSFASHVRQLCKSFEASHNAYSIAARLSGDEFAILLVAPKRFNDCAN 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 LFAQRVLAPIQSQDNSPLSHFPITASIGIATFPKDGDHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +  +  +  +    I+  L L + + E  LVY P      + +VG E L++W     
Sbjct: 504 IAYYSQALDQVVQRRNNIERALRLGLFDQEFNLVYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++  + +   N  PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISQTFKEFSALQAMFND-PIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     K   +P  I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQYIHQQAEKFSVTPQWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQAMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CDY+Q  +   P+  + I K 
Sbjct: 741 DYHCDYMQGFYFGHPMSLDEIQKW 764


>gi|90420584|ref|ZP_01228491.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335312|gb|EAS49065.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 624

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 195/437 (44%), Gaps = 11/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  +     A+ D LT +PNR+ F +     +   A + +    ++++DID  K IND +
Sbjct: 173 QMQQHNHHLAYFDQLTNLPNRRCFDE----AITALALETSPSFALILVDIDHLKAINDSM 228

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G  VGD ++  + +R+ +          RLSG+ F ++     N  ++A  A A+R+ ++
Sbjct: 229 GHMVGDRLIREVAQRLRDSDAAAVSAAYRLSGDEFAVVCDPCRNHAELARIAHAIRRRMS 288

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P       +    ++G   +      +  + +NA+ A+YHAK        +F      +
Sbjct: 289 PPFECNGNMMVPQVTLGGVVYGPDGSDAETLRQNADFALYHAKETDRGSYVAFDAELRTT 348

Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               ++   ++  A+    +   Y P++RL   EIVGLEAL +   P    +++  F   
Sbjct: 349 IMQRVETIREVDQALSEDRILTYYQPVVRLDTAEIVGLEALARMVTPDGRIVAAGAFSAA 408

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +   I+  M  +IARD+ +W  +       + IN+A  D    +L     A    
Sbjct: 409 FSDNKVASRISERMFAQIARDLAAWIARGLPIQ-HVGINLAPADFESGDLEARFLAPFEA 467

Query: 821 TLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 ++ +  +E+V +    E     L RLR +G+ ++LDDFGT  + L++L  +P D
Sbjct: 468 AGVPYHQLVVEVTENVFLDGLGEDVAESLTRLRNLGVLVSLDDFGTGFASLTHLLKLPVD 527

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +          AI+  ++ +A  +   ++A+ I      + L  +G    Q 
Sbjct: 528 IIKIDRSFVDQMLTDAPSSAIIEGLMGIADKLGMRVVAEGIENAGQAERLNELGYVLGQG 587

Query: 938 SHVASPLGFNSILKLLK 954
            H A P  FNS   LL+
Sbjct: 588 YHFARPADFNSTTDLLQ 604


>gi|120402915|ref|YP_952744.1| diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955733|gb|ABM12738.1| diguanylate cyclase/phosphodiesterase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 769

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 99/435 (22%), Positives = 199/435 (45%), Gaps = 17/435 (3%)

Query: 519 ITEQKKSLEG-ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +T++    +  +      D LTG+PNR  F  RL   +       + R  ++ +D+D +K
Sbjct: 324 LTQRLYWAQRGLAYQVHHDALTGLPNRILFARRLDEAMA------HGRFVLIFVDLDDFK 377

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND  G A GD++L ++  R+   +   D LAR+ G+ F +++     + ++   A  +
Sbjct: 378 EVNDRFGHAAGDELLRAVGERLKRCVTAADTLARIGGDEFAVLI--VAEAEQLEVVAERL 435

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVESF 695
           R ++  P  +    + V AS+G           TS ++L+ A+++MY  K  G +    +
Sbjct: 436 RIALRDPFPVHGSSVRVKASMGLVRPEGDGMPQTSDDLLRQADISMYAGKRMGKDTAVVY 495

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           + +S                      LVY P++RL +   V +EAL +W  P   +IS  
Sbjct: 496 QPASGVIVDFPTMLRTADGGAPPGFRLVYQPVVRLPEGTPVAVEALARWTAPNGIDISPE 555

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E   M    +  +L+   R++     Q     + I +NI +  L +    + + 
Sbjct: 556 TFVAVTEAAGMGADFDALVLDLACREV-----QGRGLNLDIHVNIGAARLGNPGFEQQVS 610

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++++     +R+ L  +E+  + + +R+   + RL ++G+ + LDDFG   + L+YL  
Sbjct: 611 QVLARHRIPRNRLVLEITETEPIVDLDRAAAQIRRLGQLGVRVALDDFGAGFNSLTYLHC 670

Query: 876 IPFDTVKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   VK + SL + G   + +++ RS+I +  ++   +IA+ I      + +   G   
Sbjct: 671 LPVHIVKLDRSLAVGGEPARDLSLYRSVIRLCDDLGLDVIAEGIELPAQSEMVHSAGGRL 730

Query: 935 IQDSHVASPLGFNSI 949
            Q      P+    +
Sbjct: 731 AQGHLFGRPVPIAEL 745


>gi|260768656|ref|ZP_05877590.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616686|gb|EEX41871.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 901

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 104/566 (18%), Positives = 234/566 (41%), Gaps = 22/566 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             ++      + +  ++      G    +   +  +  V   P    +LG +  ++ G  
Sbjct: 342 ARSSNQAQDQLKATLQKFEALYHGQSVGMILLN-EKVIVDVNPATLELLGYSRDTLIGKT 400

Query: 450 RNWLPYIHIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +      D   + F  +LD      +G+  +E  +  +D       I    +   +G
Sbjct: 401 LEAICGTSNADCAVEQFFAMLD------KGQNTFEAMMLRSDMTEIACSIEATIL--QDG 452

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           D    +    DI+EQK+  E I      D ++G+ NR + +  +  +       + L  +
Sbjct: 453 DTSSVMLAVQDISEQKQQAELIQTLTQYDPISGLLNRPTLIHCVRRLFRH--QSEGLEFS 510

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+  +  + K+I++V G  + D  +  +   +       D + R+S + F +        
Sbjct: 511 VIYFNATRLKEIDEVYGHELYDACVRHIADSLKRYFSRED-VGRISEHEFIVCCTGP--L 567

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++      +  +    I+L E E+ +       + +        ++      + +    
Sbjct: 568 NRVESMGSHILSAYRAKISLAEMELDLGLKGALLTSSIDFENFENIVHCGYYTVMNRSSS 627

Query: 688 --GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                +V +        +  ++  D+  A++N E+   Y PI++    ++VG EAL +W 
Sbjct: 628 VTHSLNVVTPEQFEQTQEVQILNRDIVAALKNREIIAHYQPIVKAASGQLVGFEALARWK 687

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL--INIASK 803
           H ++G +S + F+ +AE+  +I  +   +L++    + +++         +   +NI+S 
Sbjct: 688 HSQFGMVSPAVFVPLAEQRKLIVELGEQILDQACAFLQTFQQAQGHNKQMVSIHVNISSP 747

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               + L + ++ +I++      ++ L  +ES++MG  E ++  +  ++ +G+ L LDDF
Sbjct: 748 HFYHSSLVDTLRNVIAQYQLEAGQLVLELTESILMGVEEETQQRMDAIKALGVQLALDDF 807

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S  S L   P D VK + S + G      A  ++R+II M++ +  T +A+ +   
Sbjct: 808 GTGYSSFSSLCNFPLDIVKLDKSYIDGLDTNEKAKSLIRNIINMSQELGLTTVAEGVENA 867

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFN 947
             +++L     D IQ  +   P+   
Sbjct: 868 SQLRKLNVWNVDEIQGYYFYKPMDAA 893


>gi|253995504|ref|YP_003047568.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253982183|gb|ACT47041.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 715

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 187/428 (43%), Gaps = 11/428 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++L  +   A  D LTGI NR+ F + L   +  S    +   +++ +D+D +K IND  
Sbjct: 283 RTLSELEYYAMHDPLTGIYNRRQFNNMLEYEIGRSERHHH-EFSLLQLDLDDFKDINDSY 341

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+ L  +   + E ++  D+ AR+ G+ F +IL+ E         A  + KS+  
Sbjct: 342 GHQTGDEALCGVAEVLREHIRKGDLAARIGGDEFAVILM-ETGREGATTVANMLGKSLRE 400

Query: 644 PINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   +   +T SIG A++       +++   A+ AMY AK  G +   +      +
Sbjct: 401 RTFTAPDGKHFHLTVSIGIATYPIDAQNEADLQVGADAAMYRAKDIGKDSACTLDELDGK 460

Query: 702 SDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +      D    L  A++   +   YH I+     E+   E L +   P    +S+S F
Sbjct: 461 VEIGRHTRDNAEKLREALQQDRIIPYYHNIVDCKTGELFACETLARLVEPDGNIVSASMF 520

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E+  M + ++  ++ +  R               + +NI+++++    +    + L
Sbjct: 521 IETIEKYGMGRDLDRMIINKAFR-AKRELMLTGESGTKMFLNISAQEIQGRGILAYAEEL 579

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                  PS +     E   +G+    R  L  LR+ G +  LDDFG+  +   YL  + 
Sbjct: 580 CQTLEIPPSCVVFEILERDAIGDMTNMRKFLSNLREKGFAFALDDFGSGYNSFHYLRELR 639

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F+ VK +G+ +     ++   A++ ++  + ++I    +A+ +  +  ++ L  MG +Y+
Sbjct: 640 FEYVKIDGAFVRNILNSKIDYALVHNLSRLCQDIGIYTVAEFVETQEILEALKDMGINYV 699

Query: 936 QDSHVASP 943
           Q  H+  P
Sbjct: 700 QGFHIGLP 707


>gi|229491943|ref|ZP_04385763.1| sensory box/ggdef family protein [Rhodococcus erythropolis SK121]
 gi|229321156|gb|EEN86957.1| sensory box/ggdef family protein [Rhodococcus erythropolis SK121]
          Length = 734

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 143/726 (19%), Positives = 282/726 (38%), Gaps = 26/726 (3%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           + W    ++ +  G    ++   SG L          +    +       H+N       
Sbjct: 2   LPWAAAVHLVVTLGLTLYVIPPDSGPLPRVWPLLSGVIGLVGMCVGLAI-HFNLIAPTYR 60

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
                 I   A++  +     +V   I   +   I+   +  I   G        ++   
Sbjct: 61  MSYAFLIVEFAVVGILYSSLALVLYPILDDSGDLILTAASASITGAGAVATAMLRVVGLT 120

Query: 344 WILIFIWFIGLWMAIT-KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           W+L  +  +G+   +        I+   +V G  LI   I  +                 
Sbjct: 121 WVLSNLVILGVAFWLQPGPEFERILIGLIVYGAALIGGTIVVSGNLESRYRAELRAASER 180

Query: 403 DGERQSLAVL----GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                 + +      +GD VW+ D           +A+  GL S  + G    W      
Sbjct: 181 SV--VQMLLEDFEGNAGDFVWETDHKGKFNRIPTRLASEAGLDSAELQGT--AWQDLFME 236

Query: 459 NDRDNFRTILDSFVG-----YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                    +D+ +      + +              +  W  +  RP      D   + 
Sbjct: 237 LGTLRIPGGIDALMELQQARHTKTAFVDVLVPVRVHGEIRWWQVSGRPRPGRAPDEFVWR 296

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+ +D+TE K   + I+     D LTG+PNR SF   L  +L    T +  R  + ++D+
Sbjct: 297 GVGSDVTEVKLQSDEIVRMGRVDALTGMPNRHSFWTELERLLCDPYTSEG-RLALAMLDL 355

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D +K +ND LG  VGD VL  +  R+ E      + ARL G+ F I+     +S ++   
Sbjct: 356 DNFKSVNDTLGHTVGDAVLREVADRLSEAGGMSQLFARLGGDEFAILFTDVGDSSQVRTL 415

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                +++  PI +    + +  SIG+      + ++ EM+  A+LA++ AK  G   V 
Sbjct: 416 LGRYIETLQEPITVAGTRLEIGCSIGYYLPDELQSSADEMMGAADLALFAAKESGRGGVR 475

Query: 694 SFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +R S          + EDL   V   +L L   P I ++  EIV +E  + W + + G 
Sbjct: 476 EYRDSMKSVADRRARLLEDLGNTVAEKDLELELLPRIDVLSREIVAVEVRVVWHNARLGA 535

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++S+EFM +A++  +  ++   + E          D      + + + ++++ L  +   
Sbjct: 536 VTSAEFMSVADDTGLAYSLGTTVFELACEAASRLPDH-----LRVAVAVSTRQLESDSFV 590

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +   + ++  S  +++L  +ES  + +   S+  L  +  +GI+LT+D+FG   S L+
Sbjct: 591 DSIGDSLRRSGASAHQLELQLNESSAITD--ESKSALHAIAGMGIALTVDEFGAGFSSLA 648

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            L  +PF  V+   S ++G+     +IL +++ +   +   ++   +  E  +K +    
Sbjct: 649 SLSGLPFTRVRIERS-ISGAAPGGRSILEAVVDLVDALGMEVVVSGVDSEEQLKAVAAAR 707

Query: 932 CDYIQD 937
              +Q 
Sbjct: 708 VRTVQG 713


>gi|163784570|ref|ZP_02179420.1| sensory box protein/GGDEF domain/EAL domain [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880162|gb|EDP73816.1| sensory box protein/GGDEF domain/EAL domain [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 556

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 204/467 (43%), Gaps = 39/467 (8%)

Query: 508 DILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++   + I +DI    E     + +    + D +TG+ NR  F+  L  +      D   
Sbjct: 109 ELDIIVEIRDDIRFALEHINQQKKLFLQKYFDEITGVGNRNFFIQYLKNL-----KDRKT 163

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              + +IDI  +K IN+  G   GD VL  L + +  +L   D + R+  + F I+    
Sbjct: 164 SFVIFLIDIYHFKYINEEYGREFGDKVLRFLAKTLDSVLINED-VFRVGFDEFAIVCT-- 220

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               +       ++  ++  + + E ++ +  +I    +   +     ++   E  +  +
Sbjct: 221 --RNEPIKIVDGIKNVLSN-VKIDEHKLKLDFNIAVIRYPEDESDIERLILKLERLLDIS 277

Query: 685 KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K +G N ++ +    + + +  + I+  L  A+ N++  +   PI+++   +IVG EALI
Sbjct: 278 KSKGKNVIQYYSEEQYSTIKDLISIENKLEEAIRNNDFDIYLQPIVKISSNKIVGAEALI 337

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W       I  S+F+ +AE+  +IK I++ ML +    I  + D +    + I +NI  
Sbjct: 338 RWKDENGNFIPPSKFIPVAEQTGLIKEIDICMLLKAKETI-EYIDNSLKKKVRISVNITP 396

Query: 803 KDLLDNELCEGMQALISKTLYSP-------------SRIKLSFSESVVMGNPERSRLLLG 849
                      +     K                    I L  +E   +   E S+ LL 
Sbjct: 397 A------YVNNIIEFFEKGYIPKCKIKTDFDFSKVKELITLELTERETVEVYE-SKELLQ 449

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAK 907
           +++ IG  +++DDFGT  S LSYL  +  D +K +   +   TE      +++SII +AK
Sbjct: 450 KIKNIGFKISIDDFGTGYSSLSYLINLDVDYLKIDMQFIRKITEDEKVYKLVKSIINIAK 509

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                 IA+ +  +  ++ L ++GC++ Q    + P+  +  +++LK
Sbjct: 510 IFGIKTIAEGVETKQQLEILKKLGCNFYQGYLFSPPVSVDEFIRMLK 556


>gi|160876440|ref|YP_001555756.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160861962|gb|ABX50496.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|315268630|gb|ADT95483.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS678]
          Length = 497

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 99/418 (23%), Positives = 200/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT+++         + T+++IDI +++ +ND+ G   GD +L   
Sbjct: 82  DKLTGLVNRVGLKRTLTSMM------PLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 135

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             RI  L   P ++ARL+G+ F +         ++      ++    +P ++    ++V 
Sbjct: 136 AERINTLSLSPRLIARLNGDEFCLYYEQALTEEQLVHLRGRLQ----VPFSIKNTPVSVK 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG          +S+ML+  +LA+  A+H R      +      +   + I + L   
Sbjct: 192 LQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLRELRIIDSLPKG 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ +++Y+VY     +       +EAL++W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 252 LQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWA 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      WR       + + +N++++DL    L + + A ++     P  + +  +E
Sbjct: 312 LDQVLAQQEKWRAAGIQ--LCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITE 369

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+ L +DDFGT  S L+YL ++P + VK + + +    + 
Sbjct: 370 STLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLKDLEQD 429

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I      + L  MG D +Q  + A P+    + 
Sbjct: 430 KPSEYILEASINIAKKLGYEVTVEGIETPEIREILVAMGVDTLQGMYYAKPMRAAELE 487


>gi|78776307|ref|YP_392622.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78496847|gb|ABB43387.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfurimonas denitrificans DSM 1251]
          Length = 1002

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 101/541 (18%), Positives = 200/541 (36%), Gaps = 46/541 (8%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S  I+   D+             I   +   + G   N+                D  + 
Sbjct: 495 SSAILLRTDVNGIITYANDKFLEISKYSLQELVGKNHNFFN------------SQDEALE 542

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             +   Q   + +       W    I P+ N +G+I+ Y+ I  DITE  +  E     A
Sbjct: 543 NHQTLWQGVIKSKTKYGVDFWTKTTIVPIKNLHGEIIEYLEIRFDITEIIRHKEEFEIAA 602

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG  NR      +           N + +V + ++D +++IND  G   GD V+ 
Sbjct: 603 KTDSLTGCGNRLRLHYDMQE---------NEKLSVAIFNLDNFRQINDFYGHNFGDLVIQ 653

Query: 594 SLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           ++  +I   ++        RL G+ F  + I+     ++ +    + K I     +   E
Sbjct: 654 TIASKINMYIQHDKNFKFYRLQGDEFVTLAINAP-KDELLEKTKGILKLIKKKFYIGNEE 712

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVMIK 708
           + ++ S G +           +L  A +A+   K    + +             + +   
Sbjct: 713 LLISCSAGISF-----EEKEHLLSTANMALKITKKSSTDFLIYSSEISLEDQYKNNLNWA 767

Query: 709 EDLCLAVENSELYLVYHPIIRLM---DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           + L  A++ + L   Y PII       E     E LI+        IS   F+ +A++  
Sbjct: 768 KKLSSAIKENNLVTFYQPIINNSIDNRENPTKYECLIRIVD-NGKIISPFFFLEVAKQTR 826

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
               I   ++++                    IN++  D+L+      +  ++ +     
Sbjct: 827 QYSEITKTVVKQSFELFKDKHAHF-------SINLSVLDILEPRTTTYIFEMLKQYGI-G 878

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R+     ES  + N E     + +++  G  + +DDFGT  S   YL  +  D +K +G
Sbjct: 879 ERVIFEIVESESIDNFESIVAFIDKVKSYGCKIAIDDFGTGYSNFEYLIKLRADYLKIDG 938

Query: 886 SLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL+    + + A+  + +I+  +K +    +A+ +        +  +G DY Q  + + P
Sbjct: 939 SLIKNLDKDKNALLVVSTIVEFSKKLGMKTVAEFVENREIFDIVRELGVDYSQGYYFSEP 998

Query: 944 L 944
           +
Sbjct: 999 V 999



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQ 480
           D          +   I G     + G   +    IH + D+  F  +       ++  + 
Sbjct: 363 DKNGIISYVNDEFCKISGYTKEELIGKTYDL--VIHPHSDKKFFDQMWYEVRELKKPWIN 420

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            E +        +W+   + P+ + NG+IL YI + +DIT++K+        
Sbjct: 421 -EIKNITKSGATYWIKAILSPIIDKNGNILEYIAMCSDITQEKEIARYFEDQ 471


>gi|78777107|ref|YP_393422.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497647|gb|ABB44187.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 848

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/519 (23%), Positives = 206/519 (39%), Gaps = 30/519 (5%)

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQF 492
           LG    ++   I  +  +I I D + F        LD+        L  +  + +   + 
Sbjct: 341 LGYTDYTIRHNISEYKMHIDIKDYEKFAHRTKSLFLDTPKIGGIVGLSVQSEMASDPIKH 400

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             +   +  M+N        +G    I    K    +   A  D LT + N++ F+D L 
Sbjct: 401 IVIDSILTTMAN-------LVGSVKAIN---KYTNDLEYYAAHDPLTSLFNQRVFIDFLE 450

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +  + +  N    +MVID D +K IND  G A GD  L   +R + E  +  DIL+R 
Sbjct: 451 YEIKRAESH-NYEFALMVIDCDNFKPINDKYGHAFGDQFLQEFSRVLFESKRNEDILSRY 509

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITS 670
            G+ F +IL  E         A  + ++I     +        VT SIG + +     T 
Sbjct: 510 GGDEFTLILP-ECGLECALAVAHKIARAIEDFKLLTADGNYTGVTVSIGISIYPEHAKTQ 568

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPI 727
            E+   A+  MY AK  G N +         S     K     L  AV N+ +   + PI
Sbjct: 569 KELFLIADGMMYKAKEDGKNSIRVPSGDDIISVVKEQKAKSVLLMDAVANNRIVPYFQPI 628

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                 +    E L++ +      +S+ EF+ +AE + +I  ++L ++E     I     
Sbjct: 629 QTTASGKNEIHELLMRIEV-DGRVVSAYEFIEVAESMSIINRMDLMVIENAFIKIKQENY 687

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                   + IN++ K L+     + +  LI +   S   I    +E   + N       
Sbjct: 688 SGI-----LFINLSPKSLVVGNYADAITKLIKEYDISKDNIVFEITERETVKNFSLLEKF 742

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  L+  G    +DDFG+  S   Y+   P D +K +G  +    +     A + SI+ +
Sbjct: 743 VINLKMAGYKFAIDDFGSGFSSFHYIKKFPIDYLKIDGEFIININKDKKDRAFVNSILTL 802

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           AK +    +A+ +  E  +K L  MG DY+Q  H+  P 
Sbjct: 803 AKELNVKTVAEYVEDEEIVKTLREMGVDYLQGFHIGRPQ 841


>gi|77163880|ref|YP_342405.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|254435215|ref|ZP_05048722.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
 gi|76882194|gb|ABA56875.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207088326|gb|EDZ65598.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
          Length = 433

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 100/419 (23%), Positives = 190/419 (45%), Gaps = 9/419 (2%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +P R   L +L   L    +       +++I +  +++IN   G   GD +L+     I 
Sbjct: 8   LPQRDVILAKLHQHLQSPHSQ---LVGLLIIKLCHFREINTAFGYQAGDALLIQFAEHIC 64

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIG 659
             ++  D LAR+    F +IL S +   +    A  + +     P  +         ++G
Sbjct: 65  GHMRPQDELARIGDAEFSLILPSLHTGGQALLAANRVWELAQQYPFTVNGHTPLPHIAMG 124

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAVENS 718
            A     +     +L+ A+LA+  A+  G  +     ++ +  +  ++++E+L  A+EN 
Sbjct: 125 IALCPEHEKEPELLLRAADLAVAEAQKTGNPYHIYHSQMLATATADLVLEEELEHALEND 184

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  L + P I      I G EALI+W HP  G I   +F+ + E+  +++ + L++L   
Sbjct: 185 EFRLFFQPKISFSTNRITGTEALIRWQHPTQGMIPPGKFIPLIEKSALMEPVTLWVLNTA 244

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R    W  +    P+ + +N     L++ E+ E ++            + L  +ES VM
Sbjct: 245 LRYRAEWAKKG--IPLSVAVNFPPTLLINPEIAELIRQATRIWGTGQGDLILEVTESAVM 302

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            +P+RS   L  L  +GI L++DDFGT  S L+YL  +P + +K + S +      +   
Sbjct: 303 TDPKRSLETLRHLAALGIELSIDDFGTGYSSLAYLKNMPVNELKIDKSFVDEMAANQGDS 362

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I++++  +  N    + A+ I  +  ++ L  +GCDY Q   +  P+    +   +KE
Sbjct: 363 LIVQAVTDLGHNFNLRVTAEGIEDQATLEGLREIGCDYGQGYFLGRPMAPQDLENWIKE 421


>gi|258620369|ref|ZP_05715407.1| c-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM573]
 gi|258587248|gb|EEW11959.1| c-di-GMP phosphodiesterase A-related protein [Vibrio mimicus VM573]
          Length = 791

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 117/444 (26%), Positives = 203/444 (45%), Gaps = 16/444 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE   + +     A  D+LT + NR  F  ++   L LS   D     V+ ID+D +K +
Sbjct: 326 TELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVLYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L++    +    
Sbjct: 384 NDKYGHQIGDSLLVSFASHVRQLCKSFEASHNAYSIAARLSGDEFAILLVAPKRFNDCAN 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 LFAQRVLAPIQSQDNSPLSHFPITASIGIATFPKDGDHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  +  +  +  +    I+  L L + + E  LVY P      + +VG E L++W     
Sbjct: 504 IAYYSQALDQVVQRRNNIERALRLGLFDQEFNLVYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++  + +   +  PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISQTFKEFSALQAMFSD-PIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     K   +P  I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQYIHQQAEKFSVTPQWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQAMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
              CDY+Q  +   P+    I K 
Sbjct: 741 DYHCDYMQGFYFGHPMSLEEIQKW 764


>gi|330880186|gb|EGH14335.1| GGDEF domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 527

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 103/440 (23%), Positives = 200/440 (45%), Gaps = 18/440 (4%)

Query: 520 TEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           T ++  +        A  D+LTG+ NR+ F++ L   L       +   T+M+ID+D +K
Sbjct: 87  THRRLLRLQAQTEHLANNDSLTGLTNRRVFMEALREQLAR-----HTPLTIMLIDLDHFK 141

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIA 636
            IND  G +VGD  LV   RR+  +    + +A RL G+ F ++L+ + +  ++   A  
Sbjct: 142 AINDEHGHSVGDATLVEAARRLQGIANQHEGMAVRLGGDEFCLLLMGQKDQSELTQIAQM 201

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
               +  P+  +     + A++G A   +    SS +L  A+ AMY  KH G +    + 
Sbjct: 202 TIALLGAPMPEVSIPAPLGATVGVARSWTDSQESSMLLHFADAAMYRGKHSGRSSFNFYD 261

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            +  +       ++  L +AVE  E+   Y PI+ L  +++VG E L +W          
Sbjct: 262 CAYEQERLAQQDLEAALIMAVEKEEIVPFYQPIVALPSQKVVGYEILARWIKADGTTGMP 321

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++F+   E L +I  +   ++++  +   +W        + + +N+++  + D    + +
Sbjct: 322 ADFIPQLERLGLIPVMTRSLVKQACQAARAW-----DGSLHLSLNVSAAMVTDESFPDCL 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +  +   R ++  +E  ++GN E ++  L +L   GI + LDDFG   S L +L 
Sbjct: 377 LDQLRQEKFPFERFEVEITEEALVGNLEAAQRNLSKLHAYGIVVALDDFGMGYSGLYHLT 436

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG---EIDIKELTRMG 931
            +  D +K + S       + + ++ +I+ MAK+++  + A+ I           L + G
Sbjct: 437 RLSIDKIKIDRSFFEAGKLEHLPMVEAILGMAKSLQMRVTAEGIEDFHLPDLPDWLAQNG 496

Query: 932 CDYIQDSHVASPLGFNSILK 951
           C Y Q      P   + I  
Sbjct: 497 CHYAQGYLYGRPQAASDIAA 516


>gi|288941913|ref|YP_003444153.1| diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
 gi|288897285|gb|ADC63121.1| diguanylate cyclase/phosphodiesterase [Allochromatium vinosum DSM
           180]
          Length = 635

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 183/435 (42%), Gaps = 21/435 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ +R  F+  L   +  SA    L    +++D+D + ++N  L    GD +L  L
Sbjct: 198 DRLTGLAHRTHFMRFLQRAILDSA--PQLSVATLLLDVDGFHRVNRELSYETGDQILCEL 255

Query: 596 TRRIGELLKFPD------------ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             R+   L+                 AR   + FGI L   ++  ++ + A  +   IA 
Sbjct: 256 AARLNGALQSQSACDSLGVAERDICFARTGADEFGIALARVHHPQRLVELAAQLHSHIAA 315

Query: 644 PINLLEREITVTASIGFASWTS--SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   + ++ SIG A  +      ++ ++++NA+ A+  AK  G N    +  S   
Sbjct: 316 GFQQQGSRLHLSVSIGIAVASGLAESTSAQDLMRNADAALKRAKQAGRNRHVLYEPSWES 375

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +  +  +  L  A+      L + P   L    + G E L++        +S + F+ 
Sbjct: 376 SGTHHLRTESLLQEALRQDTFNLHFQPQFELATGRLAGAEVLLRLTLGDGTPLSPASFIP 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE    I  I  ++L R  R + +W D   +  I + IN+++ +L   +L   +Q+++ 
Sbjct: 436 VAESTGQIIEIGEWVLRRACRQLRAW-DALGLARIPLAINVSAIELSQPDLSIRLQSILE 494

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +      R+ L  +E+ +  N  ++   L  LR  G  + +DDFGT  S L  +   P  
Sbjct: 495 QEGIGMERLHLEITETAIAHNEGQTIANLKTLRAAGFEIWIDDFGTGYSSLKSIKNYPAS 554

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +   +E      +  +I+ +A N+   ++A+ I        L   GCD  Q 
Sbjct: 555 GIKLDREFVKDLSEDHGARVVAAAILDLAWNLGYPVVAEGIEDAAQCALLRGQGCDIGQG 614

Query: 938 SHVASPLGFNSILKL 952
            H+  P+      +L
Sbjct: 615 FHLGHPVDALEFQRL 629


>gi|99081996|ref|YP_614150.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99038276|gb|ABF64888.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 904

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 148/802 (18%), Positives = 300/802 (37%), Gaps = 85/802 (10%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS-------SLIIFLFMY 272
               M   V     +       + N       +       A          +L+  + + 
Sbjct: 115 FLGYMVVSVALSALVYPVVGHWIWNQAGWLRQMGFVDFAGATVVHSVGGWTALVTIIILG 174

Query: 273 LHWNRWHAKVGY-----ITFSGIACIAILFCMSFYYPMVTAS--------IARITLASIV 319
               R+  K        I+   +  + +      +      +        IAR  L +  
Sbjct: 175 PRLGRYGPKKRRFDEYSISLVTLGGLLLWVGWGAFNGGSAMAFGTGVGPIIARTMLLAAG 234

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV 379
                  I  G+  + RA LL+  ++   +        +T  +   I   AL    V+I 
Sbjct: 235 AGVASIAIGLGLFRHVRAELLVNGFLGGLVAGTAGVHLMTGTVAFGI--GALGAVTVIIA 292

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-- 437
             I   +    +                 LA    G +   +    D +     +A +  
Sbjct: 293 RDILDALKIDDVVGAVPVH----------LAAGLIGTLSIAFTAPVDLLPAGSRLAQLGI 342

Query: 438 --LGLAS----------GSMHGPIRNWLPYIHIND------------RDNFRTILDSFVG 473
             LG+ +            +       L  +H  D            R+    +L     
Sbjct: 343 QALGITAVGGWVVCSMAPLILLLRARGLLRVHPKDEVRGLNLTENNQRNALMDLLAEMKR 402

Query: 474 YRR-GRLQYEFRVRAADN------QFHWMIIRIRPMSNSNGDILRYIGIANDITEQ---- 522
           ++R G      R+  +        +++ ++ R+    N+  D +R   ++  + E+    
Sbjct: 403 HQRSGSFSRRVRIDRSTEYGVLAYRYNRVLDRVEAEINARVDSIRKERMSRLLAEEAFES 462

Query: 523 -KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++ E    +A  D LTG+ NR+     L  +   ++T       ++ ID+D++K+IND
Sbjct: 463 MREAQEENAWSARHDKLTGLGNRKY----LEEVAVETSTGPLGATLLIAIDLDRFKEIND 518

Query: 582 VLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   GD VL    +R+ E ++   D   R+ G+ F +++          ++   +   
Sbjct: 519 TYGHEAGDVVLEHTAQRLSEKIRTGRDFAFRIGGDEFVVLMEFAGTQDDAFEYCSDLLFE 578

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           +  P+     ++ V ASIGFA       T    L+ A+LA+Y +K  G + V ++  S  
Sbjct: 579 LLQPVRYKATDLQVGASIGFALCKP-PETLGAALRRADLALYASKADGRSCVNAYSASIG 637

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +++ +  D   A  N+E+ +   P I     EI G EAL +W HP  G +S   F+
Sbjct: 638 SAHDEKMNLIRDFKQAFANNEIEVTLQPQIDGKTMEIAGCEALARWHHPVRGIVSPDVFV 697

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A+E+ M+  ++  +L+       ++       P  + +N++++ L   +L + +Q   
Sbjct: 698 PVAKEVNMLADLDRRILDLALAAYWNFASHGIALP-SLSVNVSAERLGHPDLIKELQQ-- 754

Query: 819 SKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +    P  +     E+V +    E     +  L+ +GI++ +DDFGT  + ++ +  + 
Sbjct: 755 -REDLPPDGLAFELLETVFLDQLTENYANQIAALKAMGIAIEIDDFGTGHASIAGVLALK 813

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +    +G  EK  R  ++R +I MA +     + + +  E   + L+ +G D +
Sbjct: 814 PDRLKIDRMFTSGIDEKPARRDLMRGLIEMAASAGAETVVEGVETEAQAQVLSELGADVL 873

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q    A P+     L   ++  
Sbjct: 874 QGFAFARPMDQERFLLWAQDWN 895


>gi|27366713|ref|NP_762240.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27358279|gb|AAO07230.1| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 638

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 198/444 (44%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K + +        D+ TG  NR +    L  +LD      +    V+ I     
Sbjct: 187 QEIDRRKAAEQQAHYQKHHDHGTGFLNRCALEQHLQRMLDEW-RLGDSSLVVIHIGFTNA 245

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G A+ DD+L     +IG +     I  R S +   I + +++ +  + +    
Sbjct: 246 RSIQTKYGFALLDDLLKIYRNQIGVIESVDSITGRPSSHDLVIAIRADDVTDILDNLLNR 305

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +      + E E  + A IG A   S+  ++ ++L++A  AM  +K  G  +     
Sbjct: 306 IINAGQRGFKVGESEAHLHAFIGLAVADSTTESAQQLLRHANQAMVLSKDSGQQYAYFSA 365

Query: 697 VSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +        I+  L  AV N +L L + P +     + +G EAL++W HP  G+IS+ 
Sbjct: 366 THADALLHHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W     +    + +N+++  L +    E +Q
Sbjct: 426 ALIHMAEQNGLIFEVGAFVLRSAIEKAKEWSA--IVEHFRVAVNVSAIQLKNPLFAEQVQ 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L RL ++G++L+LDDFGT  +  SYL  
Sbjct: 484 ELLIAYQLPAQYLELEVTESGLISDEVVARATLERLHELGVTLSLDDFGTGYASFSYLKK 543

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      E+   I+RSII +AK ++  ++ + I  ++    L R GCD
Sbjct: 544 YPFDAIKIDKSFVQHIDKSEEDKEIIRSIIHVAKKLDLEVVMEGIESDLQEDFLIREGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+  +  ++ L  + 
Sbjct: 604 IGQGFLYGKPMPGSEFVQGLYSQN 627


>gi|113972242|ref|YP_736035.1| diguanylate phosphodiesterase [Shewanella sp. MR-4]
 gi|113886926|gb|ABI40978.1| diguanylate phosphodiesterase [Shewanella sp. MR-4]
          Length = 816

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 125/681 (18%), Positives = 290/681 (42%), Gaps = 30/681 (4%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + Y            LA +V   +  +    M+ +    LL+  +  +  + +     + 
Sbjct: 147 AQYPGATELVYLESDLAPLVARASTELQQRFMRVWGLGALLLIGFTFVLYYLLIRPFKML 206

Query: 360 KRLDNDIIQPALVGGLVL---IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +    +  P     +      V+ +  ++ Q         + +    +R   AV GS +
Sbjct: 207 SQSAKHVGTPEFSTQVPWSASEVLSLQTSLQQVHERLARAVKQLNDSEQRWLFAVEGSRN 266

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +WDWDI    V  +     ++G     + G  + W   +H +DR      L  +V  + 
Sbjct: 267 GIWDWDIRTGEVFLSDRWKEMIGYQPDELEGAFQTWESRLHPDDRQTVLDCLQEYVSGKT 326

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              +   R+   D  + W+  R   +  +  G   R IGI  D++E +++   I     Q
Sbjct: 327 KEFESVHRLLHRDGHYVWVFDRGMLVDWDHLGRPTRMIGIHVDVSESERNHAAIAELVKQ 386

Query: 536 DNLTG---IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            + TG   +P  ++F+ +L+  +   ++  +    +++++++    +++ L     + +L
Sbjct: 387 -SETGHRMLP--EAFMLQLSQYISQRSSTGHWD-ALLLLNVET-HTVSNTLTSHELERLL 441

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINL 647
             L+ R+        +++ +  ++F I++            +    A  +R   + P + 
Sbjct: 442 SQLSARLSSYFAENIVISHIELDQFAILIKELAADAKMAGRRALALATELRHIASRPFHH 501

Query: 648 LEREITVTASIGFASWTSSKITSSEM-LKNAELAMYHAK--HRGGNHVESFRVSSFRSDR 704
            ++ +  + +IG     S +    E+ L+ A+LAM HA    + G       + + +   
Sbjct: 502 ADQSVNFSTNIGICLLDSIETIVPEIALRRAKLAMQHAHSFEQAGCAFYHPDLENIQDPE 561

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + + + L  A+ +++L L++ P++ +   +IV  E L +W       I  ++F+ +AE  
Sbjct: 562 LSLCQQLKRAITDNQLSLMFQPVVDMQ-GKIVAAEVLSRWHLANGDIIPVAKFIGLAERH 620

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I +++L +  R+ + I  ++ Q    P  + +NI++      +  E + AL  +    
Sbjct: 621 GLIASLDLNVATRVCQLIKQFKQQGISLP-RLTLNISTFSFCQADFVEQLVALTRRYELD 679

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +++ +  +ES ++ +    +  +  L + G+++TLD+FG     LS L + P + VK +
Sbjct: 680 DNQLGIELTESALLTSASFIQPRISLLAEAGVAITLDNFGAGQGALSCLRHYPLNEVKLD 739

Query: 885 GSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                  T       A+++S+    +    +I+AK +      +  +R+GC + Q  ++A
Sbjct: 740 LHCAANLTTDTSWSQALIQSV----QAFNLSIVAKGVESPQQQQLFSRLGCTHFQGYNIA 795

Query: 942 SPLGFNSILKLLKERFPLVKN 962
             L  N   +L+  R PL+++
Sbjct: 796 RALSVNDFKQLVCPR-PLLRS 815


>gi|149374817|ref|ZP_01892590.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149360706|gb|EDM49157.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 554

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 181/436 (41%), Gaps = 13/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++ +   +   A+ D+LT + NR+ F  RL   L+ +         ++ +D+D++K IN
Sbjct: 123 AKRVAENALEHMAYHDSLTDLVNRREFERRLVQALEDTHKTGRHHV-LLYLDLDQFKIIN 181

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L  +   +   ++  D LARL G+ FG++L    +++     A  + + 
Sbjct: 182 DTCGHVAGDYLLKQVAALLSLQIRSDDTLARLGGDEFGVLLRGC-DAVHAHKVAEKLCEV 240

Query: 641 IAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +         +  +V+ SIG      +  ++ E+L +A+LA Y AK RG N+V+ +    
Sbjct: 241 VHEFRFVWQNKPFSVSLSIGMVVINENYNSAGELLSHADLACYAAKDRGRNNVQLYETDD 300

Query: 700 FRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL--EALIQWDHPKWGNIS 753
               +          +  A++N+   L    ++ L  E   G   E L++ +      + 
Sbjct: 301 SDMQQRQRDMNWTSRIQQALQNNSFCLWQQEMVALQPEANDGYRTEFLVRLNEGDD-IVP 359

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AE   ++  ++  +++     +               IN++     + EL   
Sbjct: 360 PGAFIPAAERFNLMTRVDRKVIDLAFDYLDR-TGLGRESTGTFFINLSGSSFNEPELFLY 418

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L  +    P RI    +E+  + N   ++  +   ++ G    LDDFG   S  SYL
Sbjct: 419 ISQLAERYKLIPERICFEITETSAIANLNATQRFINSAKRRGFKFALDDFGAGMSSFSYL 478

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K +G  +         ++I+ +   +  +     +A+ +  +     L  +G
Sbjct: 479 KALPVDYLKIDGGFVRNLLDDPIDLSIVDACNRIGHSAGLKTVAEFVENDEVRARLVELG 538

Query: 932 CDYIQDSHVASPLGFN 947
            D+ Q   ++ P    
Sbjct: 539 LDFAQGYGISMPRPLE 554


>gi|323528829|ref|YP_004230981.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Burkholderia sp. CCGE1001]
 gi|323385831|gb|ADX57921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Burkholderia sp. CCGE1001]
          Length = 1150

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 219/577 (37%), Gaps = 11/577 (1%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            F +++ +         ++   E   + +    + V   D+           A ++G+   
Sbjct: 554  FLMVEDITERVQRDAALYEAQELAQVTLTSLAEGVIRTDLNGAVTLCNVAAAKLMGMEIA 613

Query: 444  SMHGPIRNWLPYIHINDRDNFRT--ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +       +  +             +         R+     ++A+  Q   + I   P
Sbjct: 614  DIVDKPIASVLRLLEIGTARALPCPAVSVLASGEPVRIDDFVGLQASGRQRRVVTISCSP 673

Query: 502  MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +   +G IL  + +  D  +     E +   A QD LTG+ NR+ F+ RL   +  +   
Sbjct: 674  LHAMDGKILGTVTVLQDAEKVHALTEALATQAMQDELTGLLNRRGFMRRLEQAVGGAGRH 733

Query: 562  DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            D     ++ +D+D++K +ND  G   GD +L  +   + +  +  D ++RL G+ F ++L
Sbjct: 734  DET-LCLLYVDLDRFKVVNDACGHDAGDRLLAEVAHLLSQHARLADTVSRLGGDEFVLLL 792

Query: 622  ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
               +    +A     +    A       R     AS+G AS  +   +++  L  A+ A 
Sbjct: 793  HDVDEEQALAVANRIVTALNAYRFVHDGRLFVPGASVGLASVLAGTASAATCLAWADAAC 852

Query: 682  YHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIRLMDEEIVG 737
              AK  G + V  +R  +       +       +   +EN    L    I+   D EI G
Sbjct: 853  RAAKREGRDRVCVYRPDAASIVDARLTTGWSYRIQEGLENGYFKLFLQKIVS-ADGEIFG 911

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFI 796
             EAL ++       +    F+  A+   ++  I+  +  +    +   R      P  ++
Sbjct: 912  YEALARFVDSSGEPVGPHMFLSAAKRFDLMTRIDQMIFNQALPLLYGLRVKHRGTPCPYL 971

Query: 797  LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             +N+ ++ + D      +   +S  L   + + +  +E   +   E     +  +R  G+
Sbjct: 972  SVNLGARSIADPLFRNWLIERLSDNLDVAAMLWIEITELEEINWTEEELAFVAMVRSYGV 1031

Query: 857  SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
             + LDDFGT  +    L  I  D +K + S+ +         A++++ + ++ ++   ++
Sbjct: 1032 RIYLDDFGTGYNSFDVLKRIAVDGIKIDRSVTSDIVSGPISQALVKAAVSISADMAIDLV 1091

Query: 915  AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            A+ I     ++ L R+G    Q      P      ++
Sbjct: 1092 AEGIENHATLQFLRRLGVSKFQGYFFHRPEPAAHAIR 1128



 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 2/173 (1%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +    +  +  +  +L+ G      +   +V+Q V         +     R +LA+  + 
Sbjct: 141 LRSDGKPLDLRVHVSLLEGAPDAADVSAVSVVQDVTELLETRDALAVSETRATLAIENAQ 200

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
             +WDWDI  D V  +  +  ILG +  +      +WL  +H +D + ++    +    R
Sbjct: 201 IGLWDWDIELDSVFYSDRMLEILGASHANF-TQAADWLARLHPDDVEAYQRAQTAHFERR 259

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLE 527
               + E RVR AD  + W+  R + +  ++ G  LR IG   DI  +K++ +
Sbjct: 260 SEHYECELRVRHADGHYKWVSDRGKVVRWNDAGKPLRIIGTLMDIDTRKRADQ 312



 Score = 62.3 bits (150), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     +  +       Q +     R       +   +   D     V   P +    GL
Sbjct: 295 LRIIGTLMDIDTRKRADQALRESEARFRGIFETTRRFIAVLDPDGRHVAVNPVVHAFTGL 354

Query: 441 ASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           ++G     +  W  +  +  +DR   R  +          +Q+E   RAAD +     + 
Sbjct: 355 SAGE-TRSLYLWEGHWWLDDSDRARVRDGVRRAACGE--YVQFEVGQRAADGRIMSTDMS 411

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527
           + P+   +G+++R    A+DIT  K +  
Sbjct: 412 MWPLRGESGEVVRIFAEAHDITSLKDTQA 440



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 8/167 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++      H + +   +Q    D +R   A    +             V     +  +L 
Sbjct: 422 VVRIFAEAHDITSLKDTQAALEDSQRFFRASFENTPVGFAIVVGEGVIVDANNAMCELLR 481

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                + G  R++      +D     + +   V    GR   E R    D     +   +
Sbjct: 482 YEKADLIG--RSFRQITVHDDPTRPLSAMPDRVKSGNGRAVIEKRYTRGDGVVIQVRSHL 539

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLE---GILCNAFQDNLTGIP 542
                +++        +  DITE+ +           A    LT + 
Sbjct: 540 VVTAYDADDQPSEAFLMVEDITERVQRDAALYEAQELAQV-TLTSLA 585



 Score = 45.7 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 45/178 (25%), Gaps = 5/178 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
                  W          + +     G  L  I    T ++         + +       
Sbjct: 3   LRTVFQAWRRRRDDASRALAREPAADGSGLEDIRRLETELELEAQLHQAVEALNRSERIF 62

Query: 408 SLAVLGSGDIVWDWD--IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             A   +   +   D       +        I+G A   + G           +D     
Sbjct: 63  RAAFEHAPLGLAIHDGTPGARLLGVNEAYCRIVGAARDELIGTEAG--HLTAGDDPHGGF 120

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQ 522
             +        GRL    R   +D +   + + +  +  + +   +  + +  D+TE 
Sbjct: 121 EQIRLTARELGGRLSLVRRHLRSDGKPLDLRVHVSLLEGAPDAADVSAVSVVQDVTEL 178


>gi|332295715|ref|YP_004437638.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermodesulfobium narugense DSM 14796]
 gi|332178818|gb|AEE14507.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermodesulfobium narugense DSM 14796]
          Length = 894

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 109/564 (19%), Positives = 221/564 (39%), Gaps = 23/564 (4%)

Query: 402 SDGERQSLAV-LGSGDIVWDW-DIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHI 458
            +  +   A+   +G  +       R+ +++    A ++G      + G         + 
Sbjct: 225 KELAQLRDALLNNAGVGIIMLKYPQREIISSNKTFAVMMGFEDEKEIIGLKIREF---YP 281

Query: 459 ND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           +D   +      +  V   +  +    R    +    +  I    +   + ++   I   
Sbjct: 282 DDETYEKVGQFTEETVFQNKSTVLRNVRFMRKNKTSMYSDISGVLVKVED-NVKYVIWTV 340

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE+ K  E +      D LTG+PNR      L      +    N    + +I+ID +
Sbjct: 341 IDVTERDKLSEELKYQESYDPLTGLPNRAMLERELERAFLRAKR-FNWPMALAIINIDSF 399

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS--GNRFGIILISENNSLKIADFA 634
           + +N+  G  VG++VL  + +R+   L+  D + R S  G+ F II  +  +  K++   
Sbjct: 400 RMVNEKFGYTVGNEVLKIVAQRLKTSLRKTDFICRFSVVGDEFAIIFENCQDKDKLSVIF 459

Query: 635 IAMRKSIAMPINL-LEREITV-TASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNH 691
             + KSI  PI+L    E+ +   S+G + +        +E+++NA  A+Y +K    + 
Sbjct: 460 KKIEKSILEPIHLKDNSEVNIIGLSMGVSLYPYVKVENQNELIRNALQALYDSKKHKQDR 519

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
              + +      +        + +EN  + + Y PI       IVG+EAL +        
Sbjct: 520 ANFWTIYGDAIVKKQ--NHYQMLLENGRVIVYYQPIYDNQTSSIVGVEALARLLDDSGDI 577

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  +F+       ++  +   +L    RD+   +D      + + +N+     +     
Sbjct: 578 LSPEKFLSKFTNENLL-ELTRQVLTIALRDVEELKDDGF--SLAVSVNVEPG-FVSERFV 633

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           E  + +I K+   PS+I     E       E++   L +L+ IG+ L LDD G+  S L 
Sbjct: 634 EIAKDIIQKSRLEPSKIFFEILERTEFAQIEKAIEHLTKLKDIGVQLALDDVGSAYSSLL 693

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            +  +  D +K +   + G     + +  + SI  +A+      + + +        L  
Sbjct: 694 RIKNLSVDKIKLDQGFIRGLEKNPQDLHFVESIFGLARAKGIYFVVEGVETPDIFDALIS 753

Query: 930 MGCDYIQDSHVASPLGFNSILKLL 953
           MG   +Q   +A P+    +   L
Sbjct: 754 MGVPLLQGYAIAKPMPKALLRDFL 777


>gi|304410222|ref|ZP_07391841.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|307302067|ref|ZP_07581825.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|304351631|gb|EFM16030.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|306914105|gb|EFN44526.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 497

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 199/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT+++         + T+++IDI +++ +ND+ G   GD +L   
Sbjct: 82  DKLTGLVNRVGLKRALTSMM------PLTQGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 135

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +         ++      ++    +P ++    ++V 
Sbjct: 136 AERLNSLSLSPRLIARLNGDEFCLYYEQALTEEQLIHLRGRLQ----VPFSIKNTPVSVK 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG          +S+ML+  +LA+  A+H R      +      +   + I + L   
Sbjct: 192 LQIGCVHLQEHHADTSQMLRRVDLALKKARHSRSAIAYYAENDDIQQLRELRIIDSLPKG 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ +++Y+VY     +       +EAL++W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 252 LQRNQVYMVYQAKQDIATGRCFQVEALMRWEHDELGVISPGEFIPLAEYAGMIDLVSQWA 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      WR       + + +N++++DL    L + + A ++     P  + +  +E
Sbjct: 312 LDQVLAQQAKWRAAGIQ--LCVAVNLSTRDLDSETLPQEIAARLAHYKLPPESLMIEITE 369

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+ L +DDFGT  S L+YL ++P + VK + + +    + 
Sbjct: 370 STLMADLTKAVETLDKIRALGVRLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLKDLEQD 429

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I        L  MG D +Q  + A P+    + 
Sbjct: 430 KPSEYILEASINIAKKLGYEVTVEGIETPEIRGILVAMGVDTLQGMYYAKPMRAAELE 487


>gi|241764928|ref|ZP_04762928.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
 gi|241365490|gb|EER60255.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Acidovorax delafieldii 2AN]
          Length = 756

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 99/436 (22%), Positives = 206/436 (47%), Gaps = 14/436 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  LE +  +A+ D L  +PNR  F++++   +       +    + ++DID +   N++
Sbjct: 331 RGLLERLQRHAYSDPLVSLPNRARFIEKVDECVQR----GSESLMLALVDIDDFSATNEL 386

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L +  +R+   L    +LAR+  + FGI+                +   + 
Sbjct: 387 MGHRFGDRLLNAAAQRLAAALPSGVMLARVGPDTFGILGP------AHKVRPQQLLDCVR 440

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSF 700
            P+++ +    V+ + G+   ++   T  +++K+A +A+  AK         F   + + 
Sbjct: 441 APLSINDMPHQVSMTCGYVLLSNDGRTGDDLVKDATIALKRAKRDHRGQHLQFAAPMGAE 500

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             DR ++  +L  A+EN++L+LVY P + L   +++GLEAL++W       +   EF+ +
Sbjct: 501 ARDRAVLLAELRAAIENADLFLVYQPQVHLDTGDLIGLEALLRWRTADGRLVPPDEFIPV 560

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  +  + LE   + +   +     P   + +N++   L D    + + A +S 
Sbjct: 561 AEHSGLILPLGRWALETACQTLRELQTAGLAPA-RMAVNVSVVQLRDPGFFDMVCAALST 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +ESVV+   +  +  L  LR  G+++ +DDFGT  S LSYL  +P D 
Sbjct: 620 NELQGQHLELEITESVVVLPTQLLQSTLNALRAHGVTIAIDDFGTGYSSLSYLEQLPLDR 679

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + + +      +   +   ++ + + +   ++A+ I      + L  MGC   Q  H
Sbjct: 680 IKIDRTFVQQLGAPQGGRVAEMVVQLGRKLGLQVLAEGIEDATAWQTLQAMGCHDGQGYH 739

Query: 940 VASPLGFNSILKLLKE 955
           +A P+   ++++ L +
Sbjct: 740 IAYPMDKAALMRWLAQ 755


>gi|254226985|ref|ZP_04920548.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620498|gb|EAZ48869.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 627

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 99/444 (22%), Positives = 195/444 (43%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I ++  + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRLAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYRFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S M     +E    I+RS++ +AK +   ++ + I      + +   GC
Sbjct: 541 KFPFDGIKIDKSFMEQIEHSESDQEIVRSMLHVAKKLNLNVVVEGIESTQQEQFILEQGC 600

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q      P+        L+  
Sbjct: 601 DVGQGFLYGKPMPSEVFTLKLESH 624


>gi|152964918|ref|YP_001360702.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359435|gb|ABS02438.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 775

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 212/454 (46%), Gaps = 15/454 (3%)

Query: 509 ILRYIGIANDITE---QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +   + +   ++    Q ++   +      D+LT + NR+  +DRL   L          
Sbjct: 304 VTFGLLVFRAVSAVDGQARARAVLERRTRHDSLTDLANREE-VDRLVDGLRARPVPAGSD 362

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+  D+D +K++ND  G   GD++L +   R+  +     ++ RLSG+ F  +L +  
Sbjct: 363 RWVLFCDLDGFKRVNDRWGHGAGDELLRTTAGRLRAVA-GTAVVGRLSGDEF--VLATVG 419

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            + ++ D A A+  ++  P  L   E+ VTAS+G A   +    +   L++A+ AMY AK
Sbjct: 420 TATEVEDLARAVLDAVGRPAQLPGAEVVVTASVGLARVLTGAEDA---LRDADAAMYRAK 476

Query: 686 HRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +G N    F  S      D + ++  L  AV+     +VY P++ + D    G+EAL++
Sbjct: 477 AQGRNRWALFDESMRSDAGDVLDLEVALRHAVDADAFEVVYQPVVDVADGRPRGVEALVR 536

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIAS 802
           W+ P  G +S   F+ + E+  +I A+   +L+R    +  WR          + +N++ 
Sbjct: 537 WNRPGVGPVSPVVFVPVLEDAGLIVAVGRSVLDRALAQLAEWRRAGAVDQAFTVSVNVSP 596

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L D  L + +  L+         + L  +ES ++   E +  +L RLR +G+ L +DD
Sbjct: 597 RQLFDPALPDDLARLLHAHRVPGRCVVLELTESSMLEGDEATLDVLHRLRGLGVGLAVDD 656

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL   P   VK + S + G   + +   ++R+++ ++  +   I A+ +  
Sbjct: 657 FGTGYSALSYLRDFPVTRVKIDRSFVNGIGRSARDEEVVRAVVAVSHALGLGITAEGVET 716

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                 L  MG  + Q    ++ L    +  LL+
Sbjct: 717 AAQRDVLHGMGVTHGQGWLWSAALPPGELEPLLR 750


>gi|51246962|ref|YP_066846.1| hypothetical protein DP3110 [Desulfotalea psychrophila LSv54]
 gi|50877999|emb|CAG37839.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 1168

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 221/446 (49%), Gaps = 24/446 (5%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            E+ +  E +L  A  DNLTG+ NRQ FLD     L      +  R  ++++D++++K+IN
Sbjct: 726  ERDQVYERLLHQANHDNLTGLVNRQYFLDWGEK-LFNPTDGERRRHALLMLDLNRFKQIN 784

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            D LG  VGD VLV +  +I   L+  D+LARL G+ F IIL    +  K+     ++ KS
Sbjct: 785  DSLGHNVGDRVLVEVVVKIRSQLRELDLLARLGGDEFAIILEDIVSPAKVVKLVASIIKS 844

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
            +   + +  R I    S+G            ++L+ A++AMY AK+    +   F     
Sbjct: 845  VEAGVEIDGRTILTGVSVGLVMDICQYDNIHDVLRYADIAMYEAKYNSPKYFRVFNQKLH 904

Query: 699  SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            S     + I++ L    +  EL + Y PII L    + G EAL++W +P+ G +   +F+
Sbjct: 905  SRVRKTIEIEQILTNEFDPEELVVQYQPIIDLEQRRLAGFEALVRWQNPRLGYLFPDQFL 964

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQAL 817
             +AEE+ +I  I+  +LE    +I  WR Q      I + +N++  +L+D  L + +   
Sbjct: 965  PVAEEIGIISKIDEAVLELTCANIAQWRQQTTALDHIRVSVNLSQNELVDLNLAQRIIKT 1024

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            + +    PS + +  +ES +M N    + +L  LR+ GI + +DDFGT  S   +L  +P
Sbjct: 1025 VERYGLKPSDLAIEVTESALMSNVRFGKRILMDLRESGIGIHIDDFGTGYSSFGHLADLP 1084

Query: 878  FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE---------IDIKE 926
            FD +K + S +  + E  +R+ +L +++ M+K++E                      +  
Sbjct: 1085 FDVLKVDKSFLLQAHESVQRMTVLEALVRMSKSLEI---------PVVVEGVEEREHLDL 1135

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKL 952
            +  +GC Y Q  H A P+  + ++  
Sbjct: 1136 VCALGCRYGQGYHFAKPIDRDKVVDF 1161



 Score = 98.9 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 51/133 (38%), Gaps = 2/133 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  + ++    V       W+W++V + +  +     ++G      +  I  W   +H  
Sbjct: 443 LQQEKDQYKRIVDVGIHGFWEWNLVDESLFISAKAKKMIGYEEIDFNSSIEAWWDLVHPE 502

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D        +  +         ++R+   D  + W+  R   +   +G++L+ IG   D+
Sbjct: 503 DYVQVVET-NRSLSPDSPSYDIQYRILHRDGHYCWLQSRALGVW-QDGELLQIIGSHTDV 560

Query: 520 TEQKKSLEGILCN 532
           ++++K    +   
Sbjct: 561 SQRRKREHTLQVL 573


>gi|258622186|ref|ZP_05717212.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258585510|gb|EEW10233.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 616

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 107/469 (22%), Positives = 206/469 (43%), Gaps = 30/469 (6%)

Query: 515 IANDITEQKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           IA+D+ E K+                  DNLTG+ NR    D+L +++  S        T
Sbjct: 156 IAHDL-ECKQMTARSQSLVNQLRHEISHDNLTGLMNRNDLADKLNSMIRCSQQH----FT 210

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +DID ++ IND+ G  +GD VL  +   I + L       R++ + F  +      +
Sbjct: 211 LAFLDIDGFRSINDLYGHYLGDLVLKFVADAIEKALSEEGHAFRVAADEFAFL----TTA 266

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +      A+   +A      +R I ++ SIG A +   K+T+ ++L NA LA+   K  
Sbjct: 267 HEPMKVCQAILNQLAQDYVDQDRRIKISVSIGIAKYGGEKLTADQLLFNASLALKECKRN 326

Query: 688 GGNHVESFRVSSFRSDRVM------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
              H+  +                 ++ +L      +ELY+V  PI+R    +    E L
Sbjct: 327 HNTHIRFYDTLLSNQYYRRTQIIDALRHELSKPTNQTELYVVVQPIVRRNQPDWDYFEIL 386

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W     G +S  EF+  AE+  +I  +   +LE       +  +Q+    + + IN +
Sbjct: 387 TRWKSSSLGFVSPLEFIEAAEQSGLIVELGEHILELAC-IAKTELEQSLGHKVRLSINCS 445

Query: 802 SKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +L ++    E +   I K  +      +  +E+V++     +R +L  LR++G  + L
Sbjct: 446 ADELTNSNRYLEHLLRTIKKYGFRADEFTIELTETVLLSKAAEARSILTILRELGFKIAL 505

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+Y+   P D +K + + +          +++  II +A  ++  ++A+ +
Sbjct: 506 DDFGTGYSSLNYIHSYPIDCIKIDATFVHNLLTNHTSESVVWLIIQLANQLKLDLVAEGV 565

Query: 919 YGEIDIKELTRMGCDYIQDSHVASP----LGFNSILKLLKERFPLVKNT 963
             +  + +L +MGC  IQ  + + P    +      + L +  P ++ +
Sbjct: 566 ENQQALDKLYQMGCAQIQGYYFSKPDLPSMMAERWQQQLSQNSPKIQVS 614


>gi|297568208|ref|YP_003689552.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924123|gb|ADH84933.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 882

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 96/442 (21%), Positives = 186/442 (42%), Gaps = 17/442 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I    K  + +   A +D +T + N++ F + L   +  +   D    ++
Sbjct: 436 LLNLVGSVKAI---YKYTKDLEYYATRDPITQLHNQRMFWELLGYEVGRAQRHD-YSFSL 491

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           MVIDID +K IND  G A GD  L  L   + + ++  D +AR  G+ F ++L +     
Sbjct: 492 MVIDIDNFKTINDRYGHAFGDLFLQQLAEALRQAVRDGDFIARYGGDEFTVLLPTTTREQ 551

Query: 629 KIADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            I   A  + K+I+    L     ++  T S+G A +     ++ ++   A+  MY  K 
Sbjct: 552 TI-SVAERIVKAISGMSVLTAEGIKVQATVSLGIAMFPEHGKSAKDLFLVADNMMYKVKG 610

Query: 687 RGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N +     +          +    +  A+E   +   + PI+ L   E+   E L++
Sbjct: 611 EGKNAIAEPEEAEITEIFKEESKTNFRVYQALEEKSIIPYFQPILDLATGEVEAHEVLMR 670

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I++S+F+  A  + ++  ++  ++E+    +     Q       + IN++ K
Sbjct: 671 IPADDGSMIAASDFIQAAGRIGLLHKLDHLLMEKTFAVVAKQNYQG-----RLFINLSPK 725

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
             +  E    +Q L  +    P R+    +E   + N    +  +  ++  G    +DDF
Sbjct: 726 SFIFPEFFPKIQKLSQEYNIDPHRVIFEVTERDTIRNVAMLKKFVTMMKAEGYRFAVDDF 785

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGE 921
           G+  S   YL   P D +K  G  +    + R  +   +SI+ +A+ +    +A+ +  E
Sbjct: 786 GSGYSSFKYLKLFPIDFLKIEGDFIRNILDDRDYMAYTKSIVTLARELGIKTVAEYVEDE 845

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
             I     +G DY Q  ++  P
Sbjct: 846 KIINACRDLGVDYGQGYYIGRP 867


>gi|89095243|ref|ZP_01168165.1| nitrogen fixation positive protein [Oceanospirillum sp. MED92]
 gi|89080497|gb|EAR59747.1| nitrogen fixation positive protein [Oceanospirillum sp. MED92]
          Length = 666

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 114/558 (20%), Positives = 218/558 (39%), Gaps = 33/558 (5%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           +      E    AV  S  IV   D             ++ G     + G   + +   H
Sbjct: 136 ESKQQLLEEYKGAVDRSA-IVSKTDARGVITYVNEQFCSVSGFQPAELIGATHSIVR--H 192

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +  D     L S +   +       R R+     +++   I P++++NG+I+ +I +  
Sbjct: 193 PDTPDIIFKELWSTIQSGKA-WIGTLRNRSKSGDDYYVRSAISPITDANGEIVEFISVRF 251

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+TE  K  + I      D LTG+ NRQ  L+ L+          NL   +++I+I+ +K
Sbjct: 252 DVTELVKKDQTIRRQ-TTDQLTGLANRQGLLETLSQ---------NLSGYLIIININDFK 301

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIA 636
            +N+  G  VGD +L  L   +  + +   + L RLSG+ F        N          
Sbjct: 302 LVNEYFGFEVGDQLLCDLAGLLQRIAEQYALKLFRLSGDEFAFF----TNEATRDLSFDR 357

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   I   +     ++  T      +  +S     E+L +A++A++ AK +  +      
Sbjct: 358 ICDLIVEMVATNNLKVLETEFALAVTAGASSGACPELLLHADIALHSAKAQNHSVEIYDT 417

Query: 697 VSS---FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            S       + +   + +  A+ +  + +   PI+   D E V  E L++         S
Sbjct: 418 YSPLKRQIDNNITWLKRIREAIADDRIEVFAQPIVDASDVESVRYECLMRLR-EDETFCS 476

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  A+   +   +   M+E+  R      +          +NI + D+L+      
Sbjct: 477 PYLFLQAAKNGRLYGDLTRIMVEKACRFFSDRCEAF-------SLNITASDILNPVTANH 529

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   I +      R+     ES  + N E     L R++ +G  L +DDFGT  S   YL
Sbjct: 530 ILESIKRYAV-GDRLIFELVESEAIENSELVIDFLDRVKVLGCQLAIDDFGTGYSNFEYL 588

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +GSL+      E    +  +++  A+ +    +A+ ++     K    +G
Sbjct: 589 LKLDIDYIKIDGSLIRYIDRDENARIVAATVVDFARRLNVKTVAEYVHSADVEKAAREIG 648

Query: 932 CDYIQDSHVASPLGFNSI 949
            DY+Q   +  P+  + +
Sbjct: 649 VDYLQGFLLGEPVPLSKL 666



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            R  +  T     I G  +         +   I      +++ ++D  +   R     E+
Sbjct: 28  DRALLLITHGCEHITGYTTQDWLTGQVTFKDIICPEFYSHYKKVVDESLRLAR-PYSVEY 86

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           ++   D    W+  +   + +++  +    G   DI  QK 
Sbjct: 87  QIIKQDGMRLWVWEQGHGVFSAD-KLETIEGYITDIDAQKH 126


>gi|109898977|ref|YP_662232.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109701258|gb|ABG41178.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 681

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 99/421 (23%), Positives = 199/421 (47%), Gaps = 13/421 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +  D LTG+ NR+  + ++               ++   D+D +KKIND  G  +GD++L
Sbjct: 250 SSTDPLTGLLNRRGMISKVRKEFKHIVEHHT--ISLFYFDVDDFKKINDTYGHPIGDELL 307

Query: 593 VSLTRRIGELLKFPDI-----LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           V++ +++  ++   +       ARL+G+ F + +    +  K    +  + + +  PI +
Sbjct: 308 VAICQKVKLIISEMNFEGRYSFARLAGDEFVLTITDC-DKEKAIQVSRRIGQQLIDPIPV 366

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-- 705
              E+ V  S+G A  +  K +   +L  A+ AM  AK +G    + F  S   +  +  
Sbjct: 367 SGCEVKVGISLGLAYSSDKKASFKALLSQADSAMRCAKEQGKGRFKVFDDSLASAIYLKK 426

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I E+L  A+ N +  L + PI    D +   +E LI+ +      ++   F+ IAEE  
Sbjct: 427 SIAENLKNALINQDFSLRFMPIFSCSDLKPRRVEVLIRCESDAMQGVTPDVFIPIAEEFG 486

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ I+L++ E     +               INI++ +LL++   + ++ L+ K    P
Sbjct: 487 IIQNIDLWVAETSFAAMQMHFLTPGRSCPVFCINISAIELLNSSFPKQLKKLMHKYQIPP 546

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I+L  +E+ ++   E S  +L  L+K+GI+L LDDFGT  +  + L   P D +K + 
Sbjct: 547 EYIELEITETSLIEAGETSLSILKELKKLGINLALDDFGTGYTGFNQLLAYPVDCLKIDR 606

Query: 886 SLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + +     +  +   ++ +I+ +A++     + + +  +  +  L  + C+Y+Q   +A 
Sbjct: 607 TFVADIDSEHASHLPMVNAIMSIAQSYNLVTVGEGVETQGQLDYLRSVSCNYVQGYFLAK 666

Query: 943 P 943
           P
Sbjct: 667 P 667


>gi|300309604|ref|YP_003773696.1| diguanylate cyclase [Herbaspirillum seropedicae SmR1]
 gi|300072389|gb|ADJ61788.1| diguanylate cyclase protein [Herbaspirillum seropedicae SmR1]
          Length = 696

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 194/439 (44%), Gaps = 13/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  +  E +   A  D LTG+  R  F+          A        +M +D+D +K IN
Sbjct: 263 DLHQFAERMRYQAEHDLLTGLLGRAGFM----AAAQAMAARREEVLCMMFLDLDGFKVIN 318

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD VLV + RR+   L     LARL G+ F I+   +  +      A  + + 
Sbjct: 319 DAYGHDAGDQVLVEVARRLQGCLPAGATLARLGGDEFVILYALDAQAELPELLARRLIEV 378

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           +  P   L     +  S+G            EML  ++ AMY AK RG N    F    +
Sbjct: 379 VRQPFARLAHR-HIGLSLGITLSDRD--DIDEMLVCSDAAMYQAKRRGRNQFCVFNETLN 435

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +    +  ++ DL  A+   EL + + PI++   + + G EAL++W H K G I++ + +
Sbjct: 436 AHLQMKRDVERDLAGALARRELAVWFQPIVQHDGQTLDGFEALLRWQHGKHGAIAAPDLI 495

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IA    + + +  F+LE +A  I   +       + I +NI+ +++    + E + +++
Sbjct: 496 EIAALAGLSEELLRFILEEVAGMIAFLQSS-GRSDLRISMNISPREMERLVVDELVVSML 554

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                    +++  +E   + + + +   L  L   G+ + +DDFG   S L +L  +  
Sbjct: 555 KAHRLPARMLEIEITEETAL-DLQAATQTLVALALQGVRIAIDDFGVGYSSLGFLRQMQV 613

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK + S +TG  +  +  A++ +++ +A +    ++A+ +    D++ L  M C  +Q
Sbjct: 614 SRVKIDRSFVTGLADQTENQALVSAVLQLAGSFGFQVVAEGVESAEDLQTLQAMHCHAMQ 673

Query: 937 DSHVASPLGFNSILKLLKE 955
             + A P+        ++ 
Sbjct: 674 GYYFAPPMPAAQARARIEA 692


>gi|88706552|ref|ZP_01104256.1| EAL domain containing protein [Congregibacter litoralis KT71]
 gi|88699264|gb|EAQ96379.1| EAL domain containing protein [Congregibacter litoralis KT71]
          Length = 785

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 205/448 (45%), Gaps = 10/448 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D   +++S   I   A  D LT +PNR          L  + +  +    +M  
Sbjct: 328 ALSVMQDTVAERES--RIQHQAQHDLLTQLPNRNYMYTLYQRYLRENPSRASFGLALM-- 383

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           +++   ++ D+ G    D+VL S + R+   L+  D+  R+   +  + L    +  +  
Sbjct: 384 ELENLPQVRDLYGSEFSDEVLRSASERVTRSLRRGDMAGRVGDQQILLFLQGL-SPDETD 442

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +++    P+ +    +     +GF+          ++ + A+LA+  A+ +G   
Sbjct: 443 SVIEKIKEQSDEPLLINGVPVRPELRLGFSFSPGHGTDFDDLQRRAQLALSLARSQGQEF 502

Query: 692 VESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                        ++ I   L  A+     +L+Y P   + +  I G EALI+WD P+ G
Sbjct: 503 AVYALGQDESHLRQIRIANRLQEAIGEDVFHLLYQPKFSIGERRINGAEALIRWDDPELG 562

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +   EF+ IAE+  +I  ++ +++ R+  D ++ R       I I +N++  D+L +  
Sbjct: 563 QVFPDEFITIAEQTGIISKLSEWVVARVIEDQVNLRKAGID--IAISVNLSGLDVLQDGF 620

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            +G+   +         + L  +E+ +M + + +R  + R+ K+G+ +++DD+GT  S L
Sbjct: 621 VDGILEDVQSAGLPVDSVVLEVTETAMMADADSARRNMERVEKLGMRISIDDYGTGFSSL 680

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L  +P   +K + SL+    E+     I+RS I MA ++   ++A+ +     +  L 
Sbjct: 681 AQLRSLPVRELKLDRSLVDTIDEELGDRLIVRSTIDMAHHLGLEVVAEGVETAAILALLR 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
            M CD IQ   +A P+  N++ +LL++ 
Sbjct: 741 DMHCDVIQGYLLAKPMTVNALGELLEQE 768


>gi|119773636|ref|YP_926376.1| putative diguanylate phosphodiesterase [Shewanella amazonensis
           SB2B]
 gi|119766136|gb|ABL98706.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 767

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 109/448 (24%), Positives = 212/448 (47%), Gaps = 22/448 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  K    +   AF D LTG+ NR   ++   + L      D    ++ ++DID + +I 
Sbjct: 334 ENAKFFAHLNKAAFFDELTGLHNRAGLVEYGASFL---KQFDPGAASLFMVDIDYFHQII 390

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG   G+++L  ++R + +      ++ARL  + F ++L            A  +   
Sbjct: 391 ESLGYEFGNNILEKMSRVLRKEFSTRALIARLHADVFAVLLPESK------LTAHELAVR 444

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            A P+ + E+ I +  ++G +   +++     +ML++AE A+  AK       E+F    
Sbjct: 445 CAKPLMIDEQSIRLGLTVGCSVLDAAQEPDMEQMLRHAESALKVAKEHRRGSGETFNKRY 504

Query: 700 FR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +   D + +  DL +A++N ELYLV  P + +    +VG EALI+W HP+ GNI    F
Sbjct: 505 EQASRDSMTVLSDLRIALDNRELYLVLQPKVNIHTGAVVGYEALIRWQHPEKGNIPPGAF 564

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E+  +   ++L++       +     Q     + + +NI++  L      + ++A 
Sbjct: 565 IPAVEKSGLYYGLDLYVARAACELM----TQHPELNVPVSLNISANSLHHETFVDDLKAE 620

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +      R++L  +E+ ++ + +R+   L RL + G  + LDDFG   S L YL  +P
Sbjct: 621 FLRAGVPFDRVELEITENALV-HSDRAISELHRLHQSGFIICLDDFGAGFSSLGYLLRLP 679

Query: 878 FDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + + ++  T+   AI  L+ I+ + +++   +I + +  E  ++ L  M  D++
Sbjct: 680 IQVIKIDRAFISHLTDSDEAIAVLQGILRIGRDLNKQLIIEGVETEAQLELLKSMQVDFV 739

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q  +   PL  +  L LL+   P+   T
Sbjct: 740 QGFYFHRPLPVSEALALLE---PVRSTT 764


>gi|332304462|ref|YP_004432313.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332171791|gb|AEE21045.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 887

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 204/430 (47%), Gaps = 5/430 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+K   + ++ +A  D LT +PNR  F  RL+  L            V+ ID+D++K+
Sbjct: 451 IEERKAIQQKLVHDAHHDALTDLPNRTMFNARLSQALANKKRYPQNNFAVVFIDLDRFKQ 510

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+ +  RI   ++  D+LARL G+ F I+L +  +   +   +  + 
Sbjct: 511 INDTIGHHAGDSFLIEVASRINHCIRGHDLLARLGGDEFVILLDNFESPDDVEIISNRII 570

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
            SIA P  L  REI   ASIG A   S   T+SE++++A+ AMY AK +G      F   
Sbjct: 571 NSIAAPFVLDGREIFSGASIGIAYLESGYQTASEIVRDADAAMYQAKSQGRGQYVVFDLT 630

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     + + I+ +   A++     +  HP+  +  +  +  E  ++W +PK G +    
Sbjct: 631 MRKKLLEELEIETEFRKALKKEAFDVYSHPVFDMSSDNHIYDECRVRWVNPKLGVMDRDS 690

Query: 757 FMLIAEELCMIKAINLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           F  IAE   ++  ++ FML+     +       A      + +N++   L   E    + 
Sbjct: 691 FWQIAEHSGLVVEMDNFMLKAAFAMLSQTLTSYAGKSHYKVAVNLSIHYLTHTEAAVQLI 750

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I +    P R+   F E+ +    + S   +  L++ GI + LD+FG+  + LSYL  
Sbjct: 751 QDIREKQIDPKRLIFEFDENDLNRRAQFSLPAIKHLKRSGIKIVLDNFGSGLASLSYLYS 810

Query: 876 IPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD VK +   +     +E+ + +++S++ M++ ++  +I   I  +     L  +GC 
Sbjct: 811 YPFDFVKVDHRFVKTVPRSERNLKLIQSVLAMSEQLKFKLIVSGITDKEQADLLNSVGCQ 870

Query: 934 YIQDSHVASP 943
             Q  ++  P
Sbjct: 871 LGQGPYLEPP 880


>gi|329851451|ref|ZP_08266208.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328840297|gb|EGF89869.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 595

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 137/560 (24%), Positives = 243/560 (43%), Gaps = 27/560 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +  ++W +D+ +       D+   LGL        + +  P     + D   +   
Sbjct: 38  ALKSADTLLWSYDLSQRLFEFKGDLRH-LGLPPMWSRVFLDDLDPAFEAGEVDRLDSQFR 96

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG-IANDITEQKKSLEG 528
           +   +     +   +          + ++ R +  S G +L  I  ++ DI  +K   + 
Sbjct: 97  ALDVHAADPGEGHIQCLLRLRDHRLVYLKGRKV--SRGQVLGVITDLSRDIGLKKTIGKS 154

Query: 529 ------ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                  L +   D LTG+ NRQ FL+    +L  +   D     ++V D+++++++N+ 
Sbjct: 155 DAHDGLPLQDIHTDPLTGLLNRQGFLNGAGQVLRKAGDYD-----LVVADLNRFRRLNEA 209

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG    D VL  L  R+ +      +LARL  + F ++             +  MR ++ 
Sbjct: 210 LGHERADIVLELLALRLRDAFPDHAVLARLGEDEFAVL-----TQRGFPRVSERMRNALE 264

Query: 643 MPINLLEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHA--KHRGGNHVESFRVS 698
            PIN+   +I  T S+G  S           E+L+ AE+A+  A  K  GG       + 
Sbjct: 265 RPINIAGFDIQPTFSMGAVSVEGGDQALEAAELLRRAEMAVEAAQSKGAGGVASYKRDLE 324

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           S    R+ ++ DL  A  + E++  Y PI+ L    I G EAL +W HP+ G I+  +F+
Sbjct: 325 SDGLTRLALEADLRKAFVSGEIHAWYQPIVNLHTGRITGFEALARWVHPRRGVIAPDQFL 384

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQAL 817
               +L M+  +   ++    R +  W+    +P   FI +N+++ ++    L E +  L
Sbjct: 385 GAVRDLGMMVDLGTIIMTTTVRLLGQWKQAYALPSGFFISVNLSAPEIERLHLIEDVSRL 444

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I         +KL  +ES VM +P+ S  +L  LR  G  + LDDFGT  S LSYL  +P
Sbjct: 445 IRDAGLPNKMLKLEVTESDVMRDPQASARVLEDLRTAGAGIALDDFGTGFSSLSYLAKLP 504

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FDT+K + S +     +     I+RSI+ + +++   ++A+ +        L  +GC   
Sbjct: 505 FDTLKIDRSFVNTMKTEVSSEKIVRSILTLGRDLGLDVVAEGVEDLALADRLAALGCQMG 564

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    A  L        L  
Sbjct: 565 QGWGFAKALKSAEAEAFLAN 584


>gi|74317678|ref|YP_315418.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057173|gb|AAZ97613.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 698

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 181/435 (41%), Gaps = 10/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   ++  A  D LTG+ NR+ F  RL     +SA +      +  +D+D++K IND  
Sbjct: 261 QATARLVYQASHDALTGLINRREFEQRLERA-RMSALEQGREHALCYMDLDQFKVINDSC 319

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD++L  L   +   L+  D LARL G+ F ++L + +    +        +    
Sbjct: 320 GHAAGDELLRQLALLLKGKLRERDTLARLGGDEFALLLENCSIDDALEVADAFRSEVQRF 379

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---- 699
                +R   V  S+G  +  +   T++ ++  A+ A Y AK RG N +  +        
Sbjct: 380 RFKWGDRIFAVGMSVGMVAIDADSGTAAGLMSAADAACYVAKDRGRNQIHLYESRDSDLV 439

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLM---DEEIVGLEALIQWDHPKWGNISSSE 756
                +     +  A+E + L L +  I R     +     +E L++      G I    
Sbjct: 440 RHRGEMQWVTRIQRALEENRLSLSWQEIRRTDAAPEPGTRHVELLLRMIDDDGGEILPMA 499

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE   ++ A++ +++E   R    +            +N++   L D    + + A
Sbjct: 500 FIPAAERYSIMPALDAWVVEETLRLCKRYLKSTCEVHCLFAVNLSGASLKDPTFRKTLLA 559

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +       +    +E+  +GN       +  +R  G S  LDDFG+  S  +YL  +
Sbjct: 560 QLQQNPELGPHLCFEITETAAIGNLGVVNGFIDAMRGFGCSFALDDFGSGLSSFTYLKNL 619

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +G+ +          +++ +I  +   +    +A+ +  E  +  L  +G DY
Sbjct: 620 RVDYLKIDGAFVRDIATNAIDRSMVEAIHRIGHQMGLQTVAEYVESEEILSLLREIGVDY 679

Query: 935 IQDSHVASPLGFNSI 949
            Q S V  P   +++
Sbjct: 680 AQGSAVRRPEPIDTL 694


>gi|153829378|ref|ZP_01982045.1| signal protein domain/GGDEF domain protein [Vibrio cholerae 623-39]
 gi|148875161|gb|EDL73296.1| signal protein domain/GGDEF domain protein [Vibrio cholerae 623-39]
          Length = 791

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHLRQLCKNFEVSHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|284052421|ref|ZP_06382631.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira platensis str. Paraca]
          Length = 642

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 240/470 (51%), Gaps = 9/470 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              E+       + + ++  D+    ++  P +A I G  S          +  ++  D 
Sbjct: 177 QAEEKYRDIFENALEGIFQIDLQGKYISANPALAKIFGYESQQQLLVRGKQIKSVY-ADP 235

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDIT 520
           + +   ++  +  +     +E +V   D Q  W+    R +  + +  +L Y G   +IT
Sbjct: 236 ETYNRFIN-LLQTKGSVSNFEAQVYRRDGQSIWIWQNARALYSDRHDRVLYYEGSIMEIT 294

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             K++   +  +A  D+LT + NR  FLD+L   L    T DN +  ++ +D+D ++ IN
Sbjct: 295 HLKETEAKLRHSASHDSLTDLWNRAFFLDKLNDSLRKCKTLDNYQFAILFLDLDGFQFIN 354

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A+GD +L+ +++R+ + +    ILARL G+ F I+L +  +  +  D A  ++++
Sbjct: 355 DSLGHAIGDQLLIEISKRLTDCVDSH-ILARLGGDEFTILLENITDIQEAIDVAERIQEA 413

Query: 641 IAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           + +PI L + +I   ASIG     + +  +S E+L++A+ AMY AK +G      F  + 
Sbjct: 414 LKLPIFLGDNQIFTGASIGIVEGNNSNYESSPEVLRDADTAMYRAKRQGKGCYVVFDSTM 473

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +      ++  L LA++  +  L Y PII L    I G EAL++WDHP+ G IS +EF
Sbjct: 474 RTNALRRLYLQTQLRLALQEQQFELNYQPIIELSTGTIAGFEALLRWDHPQEGLISPAEF 533

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQA 816
           + IAEE  +I  I  ++L +    +  W+D+      + + +N++S+   + +L   +  
Sbjct: 534 IPIAEEAGLIVDIGEWVLRQACFQLSEWKDKFAVYSNLMMSVNLSSQQFTN-DLGRRISN 592

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           ++ +T  + S +KL  +E+ +M +PE +   L +L++  I + +DDFGT 
Sbjct: 593 ILVETGVAGSELKLEITETAIMNDPELAIATLQQLKQQQIKICIDDFGTG 642


>gi|39936282|ref|NP_948558.1| putative diguanylate cyclase/phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39650137|emb|CAE28660.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 656

 Score =  364 bits (934), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 192/429 (44%), Gaps = 11/429 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR  F D                   ++ D+D +K IND  G   GD
Sbjct: 222 EQIARADPLTGLANRSHFRDAAADAC-----RSGQGVAFVLFDVDNFKIINDTRGHDAGD 276

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            V+ ++   +       D+  RL G+ F ++L  ++ + +    A  +  ++  P+ +L 
Sbjct: 277 RVIAAVADLLRLSCGSHDLPVRLGGDEFIVVLKGDDVAARALSLARRLSGALTRPLQVLG 336

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
           + + +T SIG A+     I   ++   A+ A+Y AK  G   +  F         +   I
Sbjct: 337 QPLAITCSIGIAAHPGGPIDVEDVFSRADAALYRAKDDGRACIRLFDARMQEEFLLQRCI 396

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL+L + P + L   ++VG EAL++W HP  G I   + +  A  L + 
Sbjct: 397 DGDLPGALARGELHLEFQPQVVLATGQVVGFEALLRWRHPTAGLIPPPDIIHAAIRLQLS 456

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+ +     + +  D +  PP+ + +N++ ++L  +   + +  L  +    P R
Sbjct: 457 ARLLSFIGDAACYFLRAL-DASGAPPVNVAVNVSPRELTLHSPAKILMDLTQRHGIDPRR 515

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E  +  +P++    L R+   G  L +DDFG   S +S L  I  DT+K + S 
Sbjct: 516 VEIEITEEALF-DPKQCARELQRIEHYGFGLAIDDFGVGHSSISNLMSIALDTIKIDRSF 574

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G +  R    ++ +I  +A+ +   IIA+ +  + + + L  +GC Y Q      P+ 
Sbjct: 575 VHGVSANRQNQQLIAAITAVARPLGHRIIAEGVESQGEAETLRMLGCSYGQGWLYGRPMR 634

Query: 946 FNSILKLLK 954
               +  L 
Sbjct: 635 AADAVAWLA 643


>gi|229597245|ref|YP_001874458.2| biofilm formation regulator HmsP [Yersinia pseudotuberculosis
           PB1/+]
          Length = 728

 Score =  364 bits (934), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 304 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 361

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   D+LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 362 QRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 421

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 422 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 481

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 482 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 541

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 542 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITE 599

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 600 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 659

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 660 PEDD-AIARIISRVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 718


>gi|313682635|ref|YP_004060373.1| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155495|gb|ADR34173.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 928

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 112/546 (20%), Positives = 216/546 (39%), Gaps = 34/546 (6%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-DRD 462
            ++  + +  S  IV   D              I G +   + G   N +   H +   +
Sbjct: 405 LDQYKMVLDESS-IVSKTDDKGIITYVNEAFCEISGYSRDELMGKNHNIVR--HPDNSPE 461

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            F+ + D+    +    +  F+  +   + +++   I P+ +  G I+ YI    D+T+ 
Sbjct: 462 IFKDLWDTIRAGK--VWKNTFKNFSKTGKEYYVKSVIAPIFDERGQIVEYIAARMDVTDL 519

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
               E I+     D LTG  NR +    L         + +  PT++V++ID++  IND 
Sbjct: 520 I-MKERIIQRQLTDELTGFKNRTALFADLE--------NSSKEPTLVVLNIDRFSNINDY 570

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GDD+L +  + I EL+     L R+SG+ F  I   E ++         +    +
Sbjct: 571 FGYAAGDDLLKAFAKNIDELI-EHHHLYRISGDEFVFICFDEFSNELKEHIVGYVNNLES 629

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS---S 699
               +   +I+V  S G A       + SE+   A +A+  AK +    +          
Sbjct: 630 RKFKIGTYDISVKVSGGVA-----HASKSEVYNLAHIALKEAKEKRAKVIFFNDNRALSE 684

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              + +M+   +  A+E   +   +  I+      I   EALI+    +   +S   F+ 
Sbjct: 685 KTHNNIMMVNTIQSAIEGDRIIPYFQGIVDNKTRRITKYEALIRMIDDEGRVVSPFLFLE 744

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
            A++  +   +   M+ +      +             +N+   D++  E    +   + 
Sbjct: 745 HAKKSKLYDKLTQIMIAKTFAVFETLEYDF-------SLNLTLHDIISKETRTFLYNALE 797

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K+  + +R+     E+  + N       +  ++  G  + +DDFGT  S  SYL  +  D
Sbjct: 798 KSS-AANRLVFEIVETEEIENFGEVIEFIKTVKYYGCKIAIDDFGTGYSNFSYLSKLDVD 856

Query: 880 TVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +GSL+    + R  +  + SI+  A+      IA+ +  E    +L  +G DY Q 
Sbjct: 857 YIKIDGSLIKNINDDRDHLLTVESILHFAQKKGIATIAEFVEDEAIYAKLVELGIDYSQG 916

Query: 938 SHVASP 943
              + P
Sbjct: 917 YFFSVP 922


>gi|291613522|ref|YP_003523679.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583634|gb|ADE11292.1| diguanylate cyclase/phosphodiesterase [Sideroxydans lithotrophicus
           ES-1]
          Length = 727

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 100/430 (23%), Positives = 192/430 (44%), Gaps = 11/430 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+L  +   +  D LTG+ NR+ F + L   +D S   ++   +++++D+D +K IND  
Sbjct: 298 KTLAELEYYSTHDPLTGLHNRRHFNEMLEYEIDRSERHNH-EFSILMLDLDDFKDINDTY 356

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD  L +++  +   ++  D+  R+ G+ F IIL  E +     + A  +R ++  
Sbjct: 357 GHPCGDATLCAVSEIVRSTMRKGDLTTRIGGDEFAIILT-ETSQEGAREVAEKLRVALRD 415

Query: 644 P--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   +    T SIG  ++       S+++   ++ +Y AK  G + V S      +
Sbjct: 416 HKFEAPNGKTFHTTTSIGLIAYPKDAQNISDLMAGVDIGLYRAKSIGKDSVCSVEEVEDK 475

Query: 702 SDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                      E +  A+ N  +   + P+I     EI   EAL +   P    IS+  F
Sbjct: 476 IQTGRNVRDHAEKMREALRNDHIKPYFQPVIDCKSGEIFAYEALARLVEPNGETISAGAF 535

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+  M + ++  M+++    + +       P   + IN++S+++    +    + L
Sbjct: 536 IEIIEKYGMGRELDRVMIQKSLETLKAHIAAQGAPR-KLFINLSSQEIQGRGVLGFAEKL 594

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +    P  I     E   +G+  R R  L  LRK G S  LDDFG+  +   YL  + 
Sbjct: 595 CQELEIPPQNIVFELLERDAIGDMTRMRKFLAELRKSGFSFALDDFGSGYNSFHYLRELH 654

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F+ VK +G  +     ++   A++ ++  + +++   ++A+ +  +  + EL  MG DY 
Sbjct: 655 FEFVKLDGDFVRNILVSKIDRALVSNLSRLCRDLGMLMVAEFVESQEIMDELNAMGVDYA 714

Query: 936 QDSHVASPLG 945
           Q  H+  P  
Sbjct: 715 QGFHLGVPTP 724


>gi|304309704|ref|YP_003809302.1| GGDEF [gamma proteobacterium HdN1]
 gi|301795437|emb|CBL43635.1| GGDEF [gamma proteobacterium HdN1]
          Length = 728

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 187/438 (42%), Gaps = 17/438 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +    I   A+ D+L G+PNR + +  L         D      + ++DID +  IN
Sbjct: 303 ENLQLYLTISELAYNDSLVGLPNRNALISALEN-------DPVQGQCLALLDIDSFSDIN 355

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            +L    GD+VL ++  R+         +ARLS + F +                ++ K 
Sbjct: 356 SILDDRFGDEVLKAVAARLRTSFSEATFVARLSSDLFALY------GSATQVHPKSIAKI 409

Query: 641 IAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRV 697
            A P  +  +E + ++A+ G    T S     E+LKNA  A+  AK   RG         
Sbjct: 410 FAEPFLIFGQEALRLSATSGLVLLTGSDALGVELLKNAGAALKQAKRHARGKAIYFKEAQ 469

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S+   DR+ +  DL  AV    L L Y P +RL D  ++G E L++W       IS   F
Sbjct: 470 SAAARDRIKMLNDLRNAVSAHTLELYYQPFVRLKDRAVIGAECLLRWKATNGKFISPDTF 529

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE   ++  I  ++ +   R       +       + IN++     +      M A 
Sbjct: 530 IPIAERSGLMVPIGDWVTKTALRWRKRLEGKFAD-DFKVAINVSHVQFSEPNFVAKMLAA 588

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       +++  +ES+ + N E  +  +  LR   I L++DDFGT  S L+ L ++ 
Sbjct: 589 LDEAGVPGHHVEIELTESIAIENLELLQARIEMLRTANIHLSMDDFGTGYSSLNVLQHMH 648

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            D +K + S ++G       ++R+I+ MA ++    IA+ I  +  +  L + GCD  Q 
Sbjct: 649 LDRLKIDRSFVSGDASDDFNMVRTILAMAGHLNLNTIAEGIETQAQLDLLVKEGCDDGQG 708

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL        L  
Sbjct: 709 YFFSKPLPEAEFALWLAN 726


>gi|117928031|ref|YP_872582.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
 gi|117648494|gb|ABK52596.1| diguanylate cyclase/phosphodiesterase [Acidothermus cellulolyticus
           11B]
          Length = 547

 Score =  363 bits (933), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 102/435 (23%), Positives = 216/435 (49%), Gaps = 7/435 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +      +A +D+LTG+ NR + L  L    +           ++V++I  +K+IN ++
Sbjct: 102 ATHRRASEHAGRDDLTGVANRPALLAALDDTFEDIHRRA-AYAGLLVVNIRGFKQINAIV 160

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +  D +L ++  R+   ++  D++ARL  + F ++L   N        + A+ +++  
Sbjct: 161 GHSAADQLLTNIAMRLASRVRHRDVVARLGADEFAVLLRDFNRPEGADAMSRAILRALRE 220

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P ++    +T+  + G A       TS+E+L+ A +A+  A+H     VE++R       
Sbjct: 221 PFDVAGLPLTLDVAAGLAVAPRDADTSAELLRRAMVALQAARHARSPAVENYRPAHDPAG 280

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+ +  +L  A+   +L L Y   + L     VG+EAL++W HP+ G +  +EF+  A
Sbjct: 281 AERLTLHAELDAALRTGQLVLHYQSTVDLATGRTVGVEALLRWQHPRRGLLRPAEFLPAA 340

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  ++L+      + WR +     + + +NI+++DL D    + +  L+   
Sbjct: 341 EQSELIGLVTSYVLDAALASAVHWRQKG--IALPVSVNISARDLHDPSFPDRVDTLLHLH 398

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R+ L  +E+ +      +  +  +LR +G+ L+ DDFGT  + L  L  +P   +
Sbjct: 399 GVPADRLTLEITETTLNSRLYPADAVAKKLRDLGVRLSCDDFGTGTTPLPRLRDLPLAEL 458

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + +L+ G    + + AI+ +++ + +  + T++A+ I  + + + L R+GC   Q  +
Sbjct: 459 KIDNTLIAGIVGDDDKRAIVAAVVELGRVFDLTVVAEGIERQDEREVLIRLGCTTGQGYY 518

Query: 940 VASPLGFNSILKLLK 954
            + P+    I  +L+
Sbjct: 519 FSPPVPGALIGDVLR 533


>gi|172058537|ref|YP_001814997.1| diguanylate cyclase/phosphodiesterase [Exiguobacterium sibiricum
           255-15]
 gi|171991058|gb|ACB61980.1| diguanylate cyclase/phosphodiesterase [Exiguobacterium sibiricum
           255-15]
          Length = 680

 Score =  363 bits (933), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 114/428 (26%), Positives = 214/428 (50%), Gaps = 11/428 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D+LTG+ NR+     ++  +D   +    R T+ ++D+D YK IND  G   GD
Sbjct: 247 QMMAYTDHLTGLHNRRWLDHHMSK-VDGQYSRTKKRMTMALLDLDGYKWINDTFGFDQGD 305

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            V+   + RI  LL+  +   R +G +F +I     +   + +    + ++I  PI L  
Sbjct: 306 IVIRQFSDRIKALLREDEACIRYNGTQFFLI--QNIHPDLLEEAFTDVLEAIRQPIFLDG 363

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR-VMIK 708
           +EI +TA+IG     +   T    +   E A+   K+ G +    +        R   I 
Sbjct: 364 QEIHLTATIGIIV-PNITDTLEMRIGQMESALRAGKNEGRDRFVIYDELLHSDRREQQIV 422

Query: 709 EDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             L  A+ +  E  LVY P I L   ++   E LI+W+HPK+G IS +EF+ +AE+  +I
Sbjct: 423 GSLRRAMTDFKEFNLVYQPKIALATGKVEQAEVLIRWNHPKFGFISPAEFIPLAEKYSLI 482

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS- 826
             +  ++L+   + +  WR++ +     + +N+++           ++ ++  +L +   
Sbjct: 483 HRLTQWVLQETVKQMEVWREEDHFIR-QVSVNLSAMHFRSESHNLMIKEIVHHSLKNGGE 541

Query: 827 -RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            +++L  +E+ VM N ER+ L+LG L+++ +++ LDDFGT  S L++L ++P D +K + 
Sbjct: 542 LQLQLEITETSVMENLERALLMLGELKQLSLTIALDDFGTGLSSLTHLKHLPIDILKIDK 601

Query: 886 SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +          AI   II +AK++   ++A+ +      + L R+GCDY Q  + + P
Sbjct: 602 SFIDEVPHDERGTAITEMIIQLAKSLGIEVVAEGVETLEQHEFLKRLGCDYGQGYYYSRP 661

Query: 944 LGFNSILK 951
           +    + +
Sbjct: 662 VKVKDLDQ 669


>gi|149191762|ref|ZP_01870001.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148834404|gb|EDL51402.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 853

 Score =  363 bits (933), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 95/434 (21%), Positives = 200/434 (46%), Gaps = 14/434 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  + S   +     +D+LT + +RQ F++    +        +    +M++ I++++ I
Sbjct: 412 SHLQASFHTLREQLTRDSLTKLYSRQGFIETCNAM-------KSNSGCMMLLGINQFRDI 464

Query: 580 NDVLGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND LG   GD +L  +  R+    L    +L R++G+ F I L       +   +   +R
Sbjct: 465 NDSLGHHQGDILLSVIAERLKAWVLLENGVLGRVAGDEFAIYLPDVK-PQQQMCYQHRIR 523

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRV 697
           +  + P  +    + +  SIG A  T    T    L+NA +A  HAK       + +  +
Sbjct: 524 QIFSAPFVMQGEPLMLQVSIGIAPITGEDTT-DTTLRNAGIAHSHAKFDCQRCCIYTPDM 582

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     +  +   L  A++N++  + + PII L + + +G EAL++    +   IS  +F
Sbjct: 583 AESSKKKTRLLATLRHAIDNNKFEVHFQPIIELDNGQTLGAEALLRLRDDEGQFISPLDF 642

Query: 758 MLIAEELCMIKAINLFMLERIARDI-ISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           + IAE   +I +I   M E+    +  + + Q       + IN++  +L      + +  
Sbjct: 643 IPIAEGSGLISSIGRIMAEKSLETVVKAIKQQQLPAHFQLHINVSVIELASASYVDELSG 702

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +  +  S++ +  +ES +  N   +   L ++R +G+++ +DDFGT  S L+YL  +
Sbjct: 703 LLKRAGFPASQLTVEVTESRLADNDPITLGNLSKIRALGVNIAIDDFGTGYSSLAYLHKL 762

Query: 877 PFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF+++K + + +   T      +++ +I  ++ +   T++A+ I   +  K +  +GC +
Sbjct: 763 PFNSLKVDKAFVDRLTPDNAEQSVVAAITKLSSSFGFTLVAEGIETPLQAKLVHDLGCHH 822

Query: 935 IQDSHVASPLGFNS 948
            Q      P     
Sbjct: 823 AQGYLYGRPTPLEQ 836


>gi|153801862|ref|ZP_01956448.1| signal protein domain/GGDEF domain protein [Vibrio cholerae MZO-3]
 gi|124122573|gb|EAY41316.1| signal protein domain/GGDEF domain protein [Vibrio cholerae MZO-3]
          Length = 791

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 203/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L            I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHLRQLCKIFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|312883117|ref|ZP_07742848.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369277|gb|EFP96798.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 618

 Score =  363 bits (932), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 206/450 (45%), Gaps = 21/450 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     +      D LTG+ NR S  ++L  +       +    T+  +DI+K+K IND+
Sbjct: 173 KDLNAKLSYETSHDKLTGLFNRISLSEKLEQL------TEKNHFTLAYVDIEKFKYINDL 226

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD V+  +   I   ++  ++  R++G+ F  I  S+N           + KS  
Sbjct: 227 YGNYIGDQVIKFVAETIQNTIEDKNLAFRIAGDEFAFITFSKNP----ITLCNRILKSFK 282

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                    I     IG A  +  + T+ +++ NA LA+   K     +V+ +     + 
Sbjct: 283 SGYKDPAHNIKFNIKIGLAGNSHHRSTAEQLIHNASLALKDCKQSRYLNVQCYDTHLSKQ 342

Query: 703 DRVM------IKEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                     ++ +L    +E+SE+Y+V  PI+   D++    E L +W+    G IS  
Sbjct: 343 YYRRALVIDSLRNELAKEIMEDSEIYVVLQPIVGKPDKQWDYFEVLARWESSTLGPISPV 402

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGM 814
           EF+  AE+  +I  +   +++   +  +  + +     I + IN ++ +L  +    +  
Sbjct: 403 EFIEAAEQSGLIVELGEHIIKLACKAKLKLQTELGR-KIKLSINCSAHELNRSNQYLQSF 461

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +    ++P    +  +E+V++   E  + +L +LR IG  + LDDFGT  S L+Y+ 
Sbjct: 462 LNALKPYNFAPEDFTIELTETVLLSQTEEIQRVLTKLRLIGFKIALDDFGTGYSSLNYIH 521

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +      R A  ++  II +AK +   ++A+ +  ++ + +L +MGC
Sbjct: 522 RYPIDCIKIDATFIKNMHGSRSAERVVWLIIQLAKQLNVALVAEGVEDKVTLDKLYKMGC 581

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           + IQ    + P     I++L KE+   ++N
Sbjct: 582 NRIQGYFFSQPKIAEEIIRLQKEKIGHLRN 611


>gi|223985326|ref|ZP_03635400.1| hypothetical protein HOLDEFILI_02706 [Holdemania filiformis DSM
           12042]
 gi|223962705|gb|EEF67143.1| hypothetical protein HOLDEFILI_02706 [Holdemania filiformis DSM
           12042]
          Length = 539

 Score =  363 bits (932), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 112/544 (20%), Positives = 219/544 (40%), Gaps = 39/544 (7%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           ++  D+ +D    + +  T  GL    M      W+  IH +DR  +   +       + 
Sbjct: 22  IYVCDVKQDLSHWSKNAVTFFGLPGEYMENAAELWMAKIHPDDRGRYLKDIQDVFTGVKT 81

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E+R R+    + W+  R   M N  G+   + G+   +  + K           D 
Sbjct: 82  HHSCEYRARSQAGDYVWLECRGTMMKNEQGEPWLFAGMMTRLDARNKI----------DP 131

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+P  + F D     L+ + T       VMV+  D ++++ +  G   GD++L     
Sbjct: 132 LTGLPTMREFAD-----LNFACTHG----VVMVVGFDGFREVINNYGYRGGDEILADFAV 182

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++  +      L R  G+ F I +           F    + + A    L  R++++  +
Sbjct: 183 QLRRICPQTAALYRFEGDEFAIFIPGGTCCQAQQLFQSLAQAAKA----LGSRQVSLEIT 238

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
            G        IT   ++   E ++ H K    + +  F +   R  R +  +K+ L  +V
Sbjct: 239 GGAVCTPQDGITQEAVISKLEHSLAHGKAHRRSQLVFFSLEVSREYRRLSGLKQTLVRSV 298

Query: 716 ENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            +      LVY P++   D  +V  EAL++W           E + + E    I  +  +
Sbjct: 299 SHDCEGFSLVYQPLVDH-DHRVVCCEALLRWKADSD----VGEMIRLLENTGEILPVGRW 353

Query: 774 MLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++  +      W+ ++     FI   N++     D+   + + A   +   +P +I +  
Sbjct: 354 IVREVFAQARVWQQKSPD---FITGFNVSYLQFKDSGFSDFLIAEAKRLKINPRQIAIEL 410

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES  + + +       RLR  G +L+LDDFG   S L  +  +P D+VK + S +   T
Sbjct: 411 TESCQVEDFDGLAREFARLRAFGFNLSLDDFGIAYSTLLLIRNLPADSVKIDQSFIRDLT 470

Query: 893 EKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E+     AI+ S++ + + +   ++A+ +     +K L        Q  H A P+  + +
Sbjct: 471 EQNQVDLAIIESVVSLCRKLNIRLVAEGVENARILKLLEAYPITLYQGFHFAKPMPASQL 530

Query: 950 LKLL 953
             L+
Sbjct: 531 EPLI 534


>gi|260888626|ref|ZP_05899889.1| putative sensory box sensor/GGDEF/EAL domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|330838088|ref|YP_004412668.1| diguanylate cyclase/phosphodiesterase [Selenomonas sputigena ATCC
           35185]
 gi|260861659|gb|EEX76159.1| putative sensory box sensor/GGDEF/EAL domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|329745852|gb|AEB99208.1| diguanylate cyclase/phosphodiesterase [Selenomonas sputigena ATCC
           35185]
          Length = 671

 Score =  363 bits (932), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 105/570 (18%), Positives = 229/570 (40%), Gaps = 34/570 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           ++  A     + +     R           V  +++    +    +      +  G +  
Sbjct: 113 RNADARAMCDREVLQLLSRAKDTAHA---GVLCFNVEDSCIYANLEAYRAFQVPPGELEA 169

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               ++ ++     D   +  +S         + EF +   + +     + +  + +++G
Sbjct: 170 LRTFFMTWLKDESWD---SPWESAAA-----WEQEFFL---EGERFVYRVSMAKLFDADG 218

Query: 508 DILRYIGIANDITEQKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               Y     D   ++ ++E     +  +D LTG+ +R+ F D +   LD     +    
Sbjct: 219 HYKGYYYTIRD---RQGAMEEQSDTSWSRDKLTGLYDREGFYDAVREELDYGIKGERC-- 273

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  +I  +K +N++LG   G+++L SL     +L       ARL G+ F   +     
Sbjct: 274 -IICSNIKDFKLVNELLGEEKGNEILKSLAEFFSDLAMDSGAAARLHGDHFAAYV----- 327

Query: 627 SLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
             +       +   +             +   +G      +++  S M   A LA+   +
Sbjct: 328 -DRARFTEKDLLDGLEHLGRAFDCNSFKLNIHLGIYKIQETQMPVSVMCDRAHLALSLVR 386

Query: 686 HRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              GN V  +             I       +   +L +   P +     +++G EAL++
Sbjct: 387 DENGNKVAFYDDALMERTLREKEILGSFEEGLAERQLAVYLQPQVSTE-GDLLGAEALVR 445

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP+ G ++  +F+ I E   +I  ++ ++ E  A  +  W+       + I +NI+  
Sbjct: 446 WNHPEKGFLAPGQFIGILENAGLIHRLDQYVWEEAAAILKRWQ-GTEKEGLTISVNISVN 504

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           D+L  ++ + M  ++ +      ++KL  +E+ +MG+ E+ R L+  L++ G  + +DDF
Sbjct: 505 DMLHLDIFQTMTDIVKRYGIDAKQLKLEITETALMGDIEKYRKLISSLQESGFEVEIDDF 564

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S LS L  I  D +K +   +   G+ ++   IL ++I MAK +   +I + +  +
Sbjct: 565 GSGYSSLSMLKDIEADILKIDMGFLRQTGNPKRSSVILNAVIAMAKWLGMRVITEGVETK 624

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             ++ L  +GCD  Q    A P+       
Sbjct: 625 EQVEHLRSLGCDMFQGYFFAKPMPVEEFEA 654


>gi|332305358|ref|YP_004433209.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172687|gb|AEE21941.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 666

 Score =  363 bits (932), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 216/555 (38%), Gaps = 48/555 (8%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
               +  +L L    +   +   L              +          ++ E R   A+
Sbjct: 115 INDVLVEVLDLPPNDLQQSLGQLLEQYDPISL-LLSRNIQFLTQETSNTIENEARFLQAE 173

Query: 490 NQFH------------------WMIIRIRPMSNSNGDILR---------YIGIANDITEQ 522
            Q                    W     R     NG I           +       TE 
Sbjct: 174 KQRMEEVSWLTRIGFFLAIIALWWWANSRICKPLNGLIYSSHRALAGHDFEATKRAPTEI 233

Query: 523 -------KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                  K   E +   A  D LT + NR++F   L  ++     D+     +  ID+D 
Sbjct: 234 LELSNDFKHLTETLFHQASHDPLTELQNRRAFERNLKQVI----QDNQHNYFLCFIDLDY 289

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G A GD++LVS+ R +   ++  DI+ARL G+ F I+++       +     
Sbjct: 290 FKTINDTCGHAAGDEILVSVARILKSNVRSNDIVARLGGDEFAILILDCPFEKALQIANN 349

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
                  +  +       ++ASIG A       T+  +L  A++A   AK  G N V  +
Sbjct: 350 IKENIRTLTYHWEGETFHLSASIGVAPKVKHNSTTD-LLNAADVACGLAKSAGRNTVRLY 408

Query: 696 RVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDEEIVGL-EALIQWDHPKWG 750
             S  +++           +  A++N +  L    I+ L D +     E L++       
Sbjct: 409 DASQEKANNKQQDILSVHQINNALKNDQFILYKQDILPLQDNQSGHYFEILLRMKGVDGK 468

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS + F+ IAE   +   I+ +++  +       +DQ       I IN++   + D+EL
Sbjct: 469 VISPASFLPIAERYRLTSQIDTWVVSAVFAHFRQHQDQLENI-YMISINLSGHSMNDHEL 527

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   + K      ++    +E+V + N +R++L +  ++K+G S  LDDFG+  S  
Sbjct: 528 ETFIIDKVKKGGIPAHKLCFEVTETVAIANIKRAKLFIENIKKLGCSFALDDFGSGHSSY 587

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL  +P + +K +G+++            ++SI  +AK     IIA+ +  E  +  L 
Sbjct: 588 AYLKELPTEKIKIDGTIIANMMDNPLDYTTVKSICEIAKAANQEIIAEFVENEKTVDALK 647

Query: 929 RMGCDYIQDSHVASP 943
           ++G D+ Q  H   P
Sbjct: 648 KLGVDFAQGYHFNRP 662


>gi|315180358|gb|ADT87272.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 901

 Score =  363 bits (932), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 104/566 (18%), Positives = 231/566 (40%), Gaps = 22/566 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
             ++      + +  ++      G    +   +  +  V   P    +LG +   + G  
Sbjct: 342 ARSSNQAQDQLKATLQKFEALYHGQSVGMILLN-EKVIVDVNPATLELLGYSRDILIGKT 400

Query: 450 RNWLPYIHIND--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +      D   + F  +LD       G+  +E  +  +D       I    +   +G
Sbjct: 401 LEAICGTSNADCAVEQFFAMLD------NGQNTFEAMMLRSDMTEIACSIEATIL--QDG 452

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           D    +    DI+EQK+  E I      D ++G+ NR + +  +  +       + L  +
Sbjct: 453 DTSSVMLAVQDISEQKQQAELIQTLTQYDPISGLLNRPTLIHCVRRLFRH--QSEGLEFS 510

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+  +  + K+I++V G  + D  +  +   +       D + R+S + F +        
Sbjct: 511 VIYFNATRLKEIDEVYGHELYDACVRHIADSLKRYFSRED-VGRISEHEFIVCCSGP--L 567

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            ++      +  +    I+L E E+ +         +        ++      + +    
Sbjct: 568 NRVESMGSHILSAYRAKISLAEMELDLGLKGALLPSSIDFENFENIVHCGYYTVMNRSSS 627

Query: 688 --GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                +V +        +  ++  D+  A++N E+   Y PI++    ++VG EAL +W 
Sbjct: 628 VAHSLNVVTPEQFEQSQEVQILNRDIAAALKNREIIAHYQPIVKAASGQLVGFEALARWK 687

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL--INIASK 803
           H ++G +S + F+ +AE+  +I  +   +L++    + +++         +   +NI+S 
Sbjct: 688 HSQFGMVSPAVFVPLAEQRKLIVELGEQILDQACAFLQTFQQAQGHNKQMVSIHVNISSP 747

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
               + L + ++ +I++      ++ L  +ES++MG  E ++  +  ++ +G+ L LDDF
Sbjct: 748 HFYHSSLVDTLRNVIAQYQLEAGQLVLELTESILMGVEEETQQRMDAIKALGVQLALDDF 807

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S  S L   P D VK + S + G      A  ++R+II M++ +  T +A+ +   
Sbjct: 808 GTGYSSFSSLCNFPLDIVKLDKSYIDGLDTNEKAKSLIRNIINMSQELGLTTVAEGVENA 867

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFN 947
             +++L     D IQ  +   P+   
Sbjct: 868 SQLRKLNVWNVDEIQGYYFYKPMDAA 893


>gi|206601829|gb|EDZ38312.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 720

 Score =  363 bits (932), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 200/446 (44%), Gaps = 15/446 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            IG    I+   ++L  +   +  D LTG+ NR+ F + +   +  S    + +  +++I
Sbjct: 278 VIGSIKVIS---RTLSELEYYSTHDPLTGLHNRRYFNEMIGYEIQRSERHGH-KFCLLMI 333

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G   GD VL  L + +   ++  DI+ R  G+ F ++L SE +     
Sbjct: 334 DLDNFKDVNDSYGHLDGDRVLNQLGKIVTGTVRKGDIVCRFGGDEFVVLL-SETSLSGGC 392

Query: 632 DFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             A  +R++I              VT S+G  ++        ++L   +L +Y AK RG 
Sbjct: 393 TLAETVREAIQTWSFGTTDRGSFHVTVSVGIVAYPQDGNQIEDLLAGLDLVLYRAKERGR 452

Query: 690 NHVESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           N V S R        V +     E+   A+    +   +H I       ++G E+L +  
Sbjct: 453 NTVASSRDLRTDIRSVRLFRLHTEEFRQALGEERIVPYFHGIYAAGSGRLLGYESLARLL 512

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ--ANMPPIFILINIASK 803
           +     + + +F+ +A +  ++  ++ FMLE+  R +    D          + +N++S+
Sbjct: 513 NTDGTVVQAQDFLDLARKYGLLTTLDRFMLEKSLRTVAHHPDFSVFENGIPVLFVNLSSQ 572

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           ++ ++   +  + L  +   +PSR+     ES  + + +  ++ L  LR  G S  LDDF
Sbjct: 573 EIENHGFLDLARELCDRFGVAPSRLVFEIVESDAIQDLKSMKVFLQELRSKGFSFALDDF 632

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  +   YL  + F+ VK +G+ +     +    A++ ++I + + I T  IA+ + G 
Sbjct: 633 GSGYNSFHYLRELHFEYVKIDGAFVRNIVHSPIDRALVGNLIRLCREIGTKTIAEYVEGP 692

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFN 947
                L  M  D++Q  H   P   +
Sbjct: 693 EIHAILREMSVDFVQGYHFGLPGPLS 718


>gi|119899816|ref|YP_935029.1| GGDEF/EAL-domain-containing protein [Azoarcus sp. BH72]
 gi|119672229|emb|CAL96143.1| GGDEF/EAL-domain containing protein [Azoarcus sp. BH72]
          Length = 723

 Score =  363 bits (932), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 92/430 (21%), Positives = 191/430 (44%), Gaps = 11/430 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++L  +   +  D LTG+ NR+ F + L   +  S   ++    ++++D+D +K +ND  
Sbjct: 291 RTLAELEYYSMHDPLTGLYNRRHFNNMLEYEIGRSERHEH-EFALLLLDLDDFKDVNDSY 349

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VLV +   +   ++  D+  R+ G+ F I+L+ E  +      A  +  ++  
Sbjct: 350 GHPTGDSVLVRVAEILRGHIRKGDLATRIGGDEFAIMLM-ETGTEGAVSVAEKLGAALRA 408

Query: 644 --PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               +   +   +T SIG   +     T  ++L   ++AMY AK  G +   +      +
Sbjct: 409 TSFESPNGKRFHITTSIGVVVYPRDARTEHDLLAGVDIAMYRAKELGKDSACTLASMPGQ 468

Query: 702 SDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +  D    L  A+  + +   + PI+          E + +        I++  F
Sbjct: 469 LKATRVTRDYAEKLREALRENRMVPYFQPIVDCHTGVPFACETVARLKEKTGETIAAGAF 528

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E+  + + ++  ++ +      + R +   PP+ + IN++++++    +    + L
Sbjct: 529 IDTIEKYGLGRELDRVIIRQTLEAAAA-RARTGAPPLRVFINLSAQEIQGRGILGYAEEL 587

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            ++    PS++     E   +G+    R  L  LRK G +  LDDFG+  +   YL  + 
Sbjct: 588 CNELGIPPSQVVFEILERDAIGDMTNMRKFLANLRKKGFAFALDDFGSGYNSFHYLRELH 647

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F+ VK +G+ +     +    A++R++  + K I    +A+ +  E  ++ L  MG DY+
Sbjct: 648 FEFVKIDGAFVRSIVESPIDRALVRNLTNLCKEIGILTVAEFVESEEILEMLREMGIDYV 707

Query: 936 QDSHVASPLG 945
           Q  H+  PL 
Sbjct: 708 QGYHIGMPLP 717


>gi|260459599|ref|ZP_05807853.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259034401|gb|EEW35658.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 541

 Score =  363 bits (932), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 193/450 (42%), Gaps = 11/450 (2%)

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           ++ +    + ++ D+T+Q +    +   AF D LTG+PNR       T ++      D+ 
Sbjct: 65  ADQEAPLTVALSLDVTDQCELENDLFQQAFFDELTGLPNRALMERSFTDLIGA----DSA 120

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +  ID+D +K IND  G  VGD +L  +  R+   L+  D+L R+ G+ F +++   
Sbjct: 121 PFALAFIDLDGFKHINDYYGHTVGDLLLGKIATRLSGYLRPTDMLVRIGGDEFVLLISPV 180

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
               ++A     + +S+  P      EI  +ASIG + +     T   +  NA+ AMY +
Sbjct: 181 GAMEELASDIERVSQSLKEPFYADGFEIFSSASIGVSLYPKDGTTFDLLRTNADSAMYRS 240

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K      V+ F  S   +   R  +++ L  A+ +  L   Y P +       VG+E L+
Sbjct: 241 KGSAKGSVKFFDRSMEHAIAERTRLEQRLRFAIRDKRLCCAYQPKVDFRSGTTVGVEVLL 300

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W        +  +F+ +A EL ++  +   +L      +    D        I IN+A+
Sbjct: 301 RWRDEDGVIQAPGDFIELALELGLMNEVTHLILTETIDSVDRINDAFGHEA-SISINVAA 359

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K   D      +   I    Y P R  L  +E   +        +L  +R+IG  +++DD
Sbjct: 360 KQAGDPRFMRSLIDSIDAIGY-PDRFMLELTEEAFLAKSNFQDRILPMIREIGARVSIDD 418

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S LS L  I  D +K + S +T      +  +IL++I  + + +  ++I + +  
Sbjct: 419 FGVGYSSLSALADITADEIKVDRSFITDVHRRPRSQSILKAIESLGQLLGMSVIVEGVET 478

Query: 921 EIDIKELTRM-GCDYIQDSHVASPLGFNSI 949
             ++  L         Q  +   PL    +
Sbjct: 479 FEELTYLLAATRISCAQGYYFGKPLLLEDL 508


>gi|319945237|ref|ZP_08019499.1| sensory box/GGDEF family protein [Lautropia mirabilis ATCC 51599]
 gi|319741807|gb|EFV94232.1| sensory box/GGDEF family protein [Lautropia mirabilis ATCC 51599]
          Length = 643

 Score =  363 bits (932), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 201/430 (46%), Gaps = 15/430 (3%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ +R +F++ +   L  S  D     T+  +D+D +K +N  +G +  D +L  + + I
Sbjct: 200 GVLDRNAFIEGVRDALVRSERD-GTECTLFHLDLDHFKMVNGAVGQSCADLLLEQVAKVI 258

Query: 600 G--------ELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRKSIAMPINLLER 650
                    E    P ++    G+ F +++ +   ++     FA  +  ++     +   
Sbjct: 259 RVRIDALAREADLPPVLMGTPGGDVFLLLVEAMPRSAPVTEAFARGVLDALGNAFEVGPY 318

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
           ++ ++AS+G +      IT+ ++++ AELA   AK++G         +          + 
Sbjct: 319 QLYLSASVGASHRAGRAITAEKLIREAELAKIFAKNQGSGSYAIHDQNMDMQAEARDELG 378

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           + L  A+ N E  L Y P +  +   + G+EAL++W       +   +F+   EE  +I 
Sbjct: 379 QALRRALANEEFLLYYQPKVHTVTGVVTGVEALLRWQPEGKPMVMPDQFIPALEETGLIV 438

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
               ++L      +++WR +   PP+ + +N++++ L      + +  ++ +T      +
Sbjct: 439 PAGAWVLREACNQVMTWRARGL-PPVSVAVNVSARQLQQRGFVDTVAGILKETGLEARYL 497

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E++ + N   +  +L RL  +G+SL +DDFGT  S LSYL      T+K + S +
Sbjct: 498 ELELTETIFVDNAGDNVRMLRRLADMGVSLAIDDFGTGHSSLSYLSNFSPRTLKIDRSFL 557

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +  G     IAI R+II +   +   ++A+ +  E  +  L   GCD +Q   ++ PL  
Sbjct: 558 SEAGDGSDNIAIARAIIALGHGMGMYVVAEGVETEAQVDFLRGYGCDQMQGYLLSKPLPA 617

Query: 947 NSILKLLKER 956
           + + + L+ R
Sbjct: 618 DQLEQWLRAR 627


>gi|319427266|gb|ADV55340.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens 200]
          Length = 498

 Score =  363 bits (932), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 197/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      L T++         R T++++DI +++ +ND+ G   GD +L   
Sbjct: 83  DKLTGLSNRVGLKRTLATMM------PLTRGTMVLVDIYRFRYVNDLFGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P  +ARL+G+ F +         ++      ++    +P  + +  ++V 
Sbjct: 137 AERLHSLSLNPRFIARLNGDEFFLYYDQNLTEEQLLHLRGRLQ----VPFRINDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG     S    +S+ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 VQIGCLQLQSHHTDASQMLRRLDLALKKARITRSAIACYSENDDIRQLRELKIIDSLPKG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ ++LY+VY P   +       +EALI+W H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 253 LQQNQLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAEYAGMIDLVSQWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++      WR       + + +N++++DL    L + + + ++     P  + +  +E
Sbjct: 313 LEQVLAQQAKWRTAGIN--LCVAVNLSTRDLDSETLPQEIASRLAYYHLPPESLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+SL +DDFGT  S L+YL ++P + VK + + +      
Sbjct: 371 STLMADLNKAVETLDKIRALGVSLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLQDLERD 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I        L  MG D +Q  + A P+    + 
Sbjct: 431 KASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAKPMSAAELE 488


>gi|34498023|ref|NP_902238.1| hypothetical protein CV_2568 [Chromobacterium violaceum ATCC 12472]
 gi|34103878|gb|AAQ60238.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 102/444 (22%), Positives = 195/444 (43%), Gaps = 13/444 (2%)

Query: 517 NDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           +D  E+  ++   +   A  D LTG+PNR    + +  +L   +  D  +  V+ I ++ 
Sbjct: 335 HDALERSHRAETELAFLAQHDALTGLPNRNRMQELIARLLQ--SRRDGGQVAVLAIAVEG 392

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +  IN  LG   GD VL  + RR+ + +     + R+   RF           ++ +   
Sbjct: 393 FHDINARLGYEGGDLVLCEMARRLRQAIYPFGHVGRVGAARFVACSERT---DRLQELVE 449

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   +  P++ +  ++ +  S+G A    +   ++ +L+ A LA+  AK  GG H   +
Sbjct: 450 ELMSLLPQPVDAMGAQVEIRCSVGVAVSGDALCDAANLLRRAGLALNRAKEEGGGHSRHY 509

Query: 696 R--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +         ++    LA+   EL L Y P I L +  I G EAL++W      ++ 
Sbjct: 510 DAAMDEEIHKLHALRSAFALAIPRGELALFYQPKINLQNHRIEGAEALVRWVR-NGRHVP 568

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF    E   +++ ++ ++L    R +  WR +     + + +N+++  L   +   G
Sbjct: 569 PGEFFTAIEHTNLMRELDWWVLREAVRQMGEWRRRG--LSLPVSVNLSAATLKHEDFLLG 626

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L+         ++L   E+V     E+    L R R +G+S+ LDDFGT  S L +L
Sbjct: 627 LETLLEANPLPAGFLELEVLETVTQQEAEQITAKLERCRDLGLSIALDDFGTGASSLVHL 686

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +PFDT+K +   +          AI+RS++  A      ++ + +        L  +G
Sbjct: 687 QQLPFDTIKIDQRFVRLLLDMPGNEAIIRSMLSFAHYTGRKLVVEGVESRAIWSRLREIG 746

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C   Q   ++ PL    + + LK+
Sbjct: 747 CHDGQGYGISPPLAAGELPEWLKQ 770


>gi|320158604|ref|YP_004190982.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319933916|gb|ADV88779.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 638

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 197/444 (44%), Gaps = 6/444 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I  +K + +        D+ TG  NR +    L  +LD      +    V+ I     
Sbjct: 187 QEIDRRKAAEQQAHYQKHHDHGTGFLNRCALEQHLQRMLDEW-RLGDSSLVVIHIGFTNA 245

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + I    G A+ DD+L     +IG +     I  R S +   I + +++ +  + +    
Sbjct: 246 RSIQTKYGFALLDDLLKIYRNQIGVIESVDSITGRPSSHDLVIAIRADDVTDILDNLLNR 305

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +      + E E  + A IG A   S+  ++ ++L++A  AM  +K  G  +     
Sbjct: 306 IINAGQRGFKVGESEAHLHAFIGLAVADSTTESAQQLLRHANQAMVLSKDSGQQYAYFSA 365

Query: 697 VSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +        I+  L  AV N +L L + P +     + +G EAL++W HP  G+IS+ 
Sbjct: 366 THADALLHHNQIESYLLQAVRNDDLTLYFQPKVCPQTHKWIGAEALLRWSHPVLGDISNE 425

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  +I  +  F+L         W     +    + +N+++  L +    E +Q
Sbjct: 426 ALIHMAEQNGLIFEVGAFVLRSAIEKAKEWSA--IVEHFRVAVNVSAIQLKNPLFAEQVQ 483

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+         ++L  +ES ++ +   +R  L RL + G++L+LDDFGT  +  SYL  
Sbjct: 484 ELLIAYQLPAQYLELEVTESGLISDEVVARATLERLHEFGVTLSLDDFGTGYASFSYLKK 543

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + S +      E+   I+RSII +AK ++  ++ + I  ++    L R GCD
Sbjct: 544 YPFDAIKIDKSFVQHIDKSEEDKEIIRSIIHVAKKLDLEVVMEGIESDLQEDFLIREGCD 603

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
             Q      P+  +  ++ L  + 
Sbjct: 604 IGQGFLYGKPMPGSEFVQGLYSQN 627


>gi|330992597|ref|ZP_08316545.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
 gi|329760796|gb|EGG77292.1| Putative signaling protein [Gluconacetobacter sp. SXCC-1]
          Length = 582

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 135/549 (24%), Positives = 236/549 (42%), Gaps = 18/549 (3%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGY 474
            IV   D+             I       + G     +    H  D   FR +  +    
Sbjct: 28  LIVAITDVRGVITYVNDRFCEISRYPREELLGSTHRIVNSGYH--DASFFRQMYRTIRTG 85

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                +     RA D   +W+   I P  NS G I  Y+    +ITE   + + +   A 
Sbjct: 86  EI--WRGNICNRAKDGTLYWVATTIMPKHNSLGAIEGYVATRFEITELMNTRDRLKSLAA 143

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F + L T ++  A +      +++ D+D +K+IND+ G   GD VL  
Sbjct: 144 TDPLTGLFNRGGFNNVLQTAVEHKAQNITREIMLVMFDLDGFKQINDIHGHHAGDVVLKV 203

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+  L+   D + RL G+ F +IL        + D    +   +  PI +    + V
Sbjct: 204 ISARLMALVSPEDAVCRLGGDEFALILDHTLTRRPLQDILDQLLAELEAPIEVGNTMVNV 263

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLC 712
           + SIG +   +S+ ++  + KNA++A+Y AK  GG+    F +       +R  I  D  
Sbjct: 264 SGSIGVSPV-ASQESAESLQKNADIALYAAKRAGGHQARMFDITLHQHALERAQILTDAR 322

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             VE  E  L Y PI+ L       +EAL++W HP+ G +++  F  +  +  + +A++ 
Sbjct: 323 TGVEKDEFELYYQPILNLATGRCDQIEALLRWHHPQRGLLAAESFHDVFLDAALAQAMSP 382

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +++    D+  W +  +  P  + IN++  DLL+      ++A I +     S   L  
Sbjct: 383 RLVKAFQNDMRLWNNTLDTYP-NLTINLSRLDLLNIGFQNDLEAEIKRQGSKASDYVLEI 441

Query: 833 SESVVM---GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           SESV+     + E  R  L  L  +G  L LDDFG     +S L  I F   K +  L+ 
Sbjct: 442 SESVLAGRRSDRELLR--LQELAAMGFQLALDDFGLATLPISALRDIRFTQAKISRKLVR 499

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                + A  ++  +  +A     ++    +     ++ L  +G D IQ  +++ P+   
Sbjct: 500 EIEHDQQARDVIAHLSGLAHAFGQSVTVSGVETRGQMEILRAIGVDRIQGFYISPPISAA 559

Query: 948 SILKLLKER 956
           +++  L E 
Sbjct: 560 NLV--LAEH 566


>gi|319944613|ref|ZP_08018881.1| hypothetical protein HMPREF0551_1729 [Lautropia mirabilis ATCC
           51599]
 gi|319742150|gb|EFV94569.1| hypothetical protein HMPREF0551_1729 [Lautropia mirabilis ATCC
           51599]
          Length = 1016

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 149/966 (15%), Positives = 330/966 (34%), Gaps = 87/966 (9%)

Query: 52  IYVNQGEDFQVFTAADIDGISRR-IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHY 110
           I  +     ++ +           +++ A S   +  W +  +   +     R++ + + 
Sbjct: 31  ILASSKNFNELTSVLGSLREQGPALDLGAKSGNAKTLWVLARIPADTVE-RTRVLHIANR 89

Query: 111 RLVGSHFFSPDLGSR---RIISVTPSEGFSLDRIPN----------------SDSDVFRI 151
            +        D   +           E  +  R                           
Sbjct: 90  SVQKGDAVILDEFGQALLYAHFNNEQEPVNAARALPGYAITLPELPLPLPAGHRRFSGEH 149

Query: 152 TINPGAVVTFIMEIS-TPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFY 210
            +         +E+S   +   + LW+   + +          ++  + +LL +   +  
Sbjct: 150 DL----TAVLRLELSIAGSALSLNLWDETRFIEAQRQIEAQGTLLGSILALLGLTAFVAG 205

Query: 211 MVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPS------GELLIWRACSEIALSSS 264
            +    ++            ++ +  G++   +   +      G   + +     A ++ 
Sbjct: 206 QLMHIRVVRLLAFWLGSRAVFLMVRGGYIQFWLGSSASSVVGMGLEQMAQMAFPCACAAL 265

Query: 265 LIIFLFMYLHWNRWHAKVG--YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYY 322
           +   +   L  +R+   +   YI       ++ L     +       +  +  A +V   
Sbjct: 266 MWGLMESRLQGHRFGTWLHGMYIATGFALAVSGLLPPDIFQ----TLLYLVGGAIVVTVV 321

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILI 382
              ++    +    +V  +   +L  +        +     + +    L    +L V+  
Sbjct: 322 GMVVVNLSRRISVMSVWYLCTPLLDGMAAANTLFFLLGITQSPLPWLDLQSTTLLAVMNA 381

Query: 383 GFTVIQHVLATG----YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
              VI ++ A         +   +   R           +  +D              + 
Sbjct: 382 STAVIGYLAAERSRQLRSQEAAMTALGRYQATYRAVPIGLLSFDRENRIERYNEVAVRLF 441

Query: 439 GLASGSMHGPIR----------------NWLPYIHINDR----DNFRTILDSFVGYRRGR 478
            + +GS+                       L   H++      D F   L   +      
Sbjct: 442 DVPAGSIDPHHAPGARADASPLAIRGDSASLDRAHVDTLSALNDAFPQDLAERIHQELEN 501

Query: 479 LQ---YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            +   + +R+        W+ ++ +           +     DIT  K++   ++  +  
Sbjct: 502 FEEADFVWRLEKVSGH-RWLRVQAQKTD------TGHDVSLTDITALKQAEHHLIHESQH 554

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  NR     RL  +L+   T D    ++  ID+D++K +NDV G   GD VLV +
Sbjct: 555 DRLTGALNRHGLEKRLEALLNEHETLDQ--VSLCYIDLDRFKVLNDVFGHQAGDTVLVDV 612

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITV 654
            RR+   L     +AR+ G+ F ++L  +    ++   A     +IA  P  +  +   V
Sbjct: 613 VRRLRSRLGEHAEIARMGGDEFAVLLNGKEPPHRL--LAYRALDAIAGRPFVIAPKRFAV 670

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV------SSFRSDRVMIK 708
           TAS+G +       T S+++  A+ A   AK +G N V  F+              + + 
Sbjct: 671 TASVGMSPARR-GQTGSQLIDRADNACREAKRKGRNQVVIFQDGEQEGERQRHQVEMEVL 729

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           + L    E  +  L   P++ L +   +G E L++   P     S +  +  A     + 
Sbjct: 730 DRLRRTKEFRDFELAIQPVVGLGESNRLGGEILLRHRTPDGTLRSPAGLIEAAIYRGEMA 789

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I+ ++L    R +            FI +N++++ L D      + + + +      ++
Sbjct: 790 TIDRWVLNETLRWLDRNERAFRALD-FISLNLSAEALSDEAFKTYLLSQVRRYQQVAPKL 848

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E+V M +    + L+G LR++G    LD+ G     LS +G I    +K +G+  
Sbjct: 849 VVEINETVAMQDGYMMKRLIGGLRQLGARAALDNVGAGFVNLSAIGEIGVAYLKIDGTFT 908

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +    A+LR++  +A  +    +AK +  ++ +  L R+G DY Q   + +P+  
Sbjct: 909 ESLVHQGSGQAVLRTLTVLAHELGIASVAKSVQSDLMLPALERIGVDYGQGQALGAPMPL 968

Query: 947 NSILKL 952
               KL
Sbjct: 969 PEFEKL 974


>gi|308051452|ref|YP_003915018.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ferrimonas balearica DSM 9799]
 gi|307633642|gb|ADN77944.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Ferrimonas balearica DSM 9799]
          Length = 832

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/631 (19%), Positives = 258/631 (40%), Gaps = 26/631 (4%)

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL----------VLIVILIGF 384
           +R   L    +++ +  + L         N + +     G           +  ++ +  
Sbjct: 189 DRLSWLWVVALVLAVGLLMLGYRYLVVPMNALTRQVPRLGEPELKLPTDQGLAELVDLSD 248

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           ++ Q           + +  +R   AV G    VWDW +  + V  +     +LG     
Sbjct: 249 SMAQSNQRLRESYAQLVASEQRWLYAVEGLKLGVWDWQLDTNTVFLSHHWKAMLGYRDDE 308

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503
           +      W   +H  DR      L  ++    G  +   R+   D  + W++ +   +  
Sbjct: 309 LVSSFDAWEQRLHPEDRGRVLRQLQEYIEGHIGEFENLHRLCHRDGHYIWVLDKAMMVDW 368

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G   R IG   DIT +    +  L  +   + +G+ NR + L RL   +  +   ++
Sbjct: 369 DRDGRPRRMIGTHTDITNE--LGQPQLGLSGDSHASGL-NRPALLRRLEPAVQAADVAND 425

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-- 621
                + +D+D +K INDV G   GD +L  + RR+ +L+    ++ RL G+ F +++  
Sbjct: 426 GALL-LYLDLDDFKVINDVHGHQAGDRLLEQVERRLHKLVPEASMILRLEGDEFALMVAC 484

Query: 622 -ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAEL 679
              +    +       +   +A P  L    + + A+IG + +       ++ +L  AEL
Sbjct: 485 RPGDTPMEQAEQLGRRIHDGLAKPWLLEGSPLHMGATIGISVFVPGPDQDTNTVLAQAEL 544

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A++ AK    +    +R          + +++ L  A+ +++L L Y P++   D EI+ 
Sbjct: 545 AVFDAKEYERSSTRVYRPALHQEARRLLWLRDGLHQALTHNQLRLHYQPVMDP-DREILT 603

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EAL++W HP+ G I   +F+ + +   M   +    LE+  RD+ S R         + 
Sbjct: 604 VEALLRWHHPERGEILPDQFLPVLKRYGMSDQLTELQLEQACRDLASLRRHGVD---RMS 660

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ + L+  +  + ++  + +       + +  SE  ++   +     L  L  +G+ 
Sbjct: 661 LNLSLRQLMATDFIDQLRHQMERHGIGRQALAIELSERELLNCEDDELSRLEALVALGVD 720

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFN-GSLMTGSTEKRIAILRSIIPMAKNIETTIIAK 916
           L LDD G+     + L  +P   VK +     + +  +  A+LR+ + + + +E    A 
Sbjct: 721 LVLDDLGSGLMAPAQLLALPLTEVKLDCRHFGSLARPQAQALLRAQVQVIRALELPWTAH 780

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  E   + L   G    Q    ++P   +
Sbjct: 781 GVDEEACYEVLLGQGGRRFQGYLFSAPRPLD 811


>gi|262191811|ref|ZP_06049982.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae CT 5369-93]
 gi|262032298|gb|EEY50865.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae CT 5369-93]
          Length = 778

 Score =  363 bits (931), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 313 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 370

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 371 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 430

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 431 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 490

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 491 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 550

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 551 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 609

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 610 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 667

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 668 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 727

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 728 DYECDYMQGFYFGYPMSLSEISPWL 752


>gi|291557860|emb|CBL34977.1| diguanylate cyclase (GGDEF) domain [Eubacterium siraeum V10Sc8a]
          Length = 737

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 97/453 (21%), Positives = 204/453 (45%), Gaps = 20/453 (4%)

Query: 509 ILRYIGIANDITEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           I  YI I   ++ ++  K+ E +   A+ D++TG      F+    ++L         R 
Sbjct: 281 ITAYIVIVR-VSFRRLTKANEEVSRIAYTDSITGYGTWDKFVLDAKSLLSHEYR----RY 335

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  DIDK+K IND+ G   G+ +L  +   +   L+  +  +R++ + + I+++  ++
Sbjct: 336 ALVSFDIDKFKAINDMYGHDEGNRILKLIADTVNRNLQDGETFSRINSDNYYILMLYRSD 395

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           S         ++      I     E     S G    T   ++   M   A++A    K+
Sbjct: 396 SDTARRIGSLIQA-----IEYEITEFVPVLSFGIYRITDKSVSIRRMGDLADIAKRTVKY 450

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQ 743
              +    +  S      +   I+ ++  A++  E  + Y P + L  +  + G EAL++
Sbjct: 451 GDDSAYTFYSESMLEKMREEKRIENEMQTALDMHEFSVFYQPKVSLDGKVNLTGAEALVR 510

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       IS  +F+ + E+   I  ++ ++++++ + I  W  ++  P + I +N++  
Sbjct: 511 WI-KDGTVISPGKFIPLFEKNRFIVKLDYYIMDQVCQKIKQW--ESYYPHLLISVNMSRA 567

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L D +  E +  +      S S I++  +ES    + +    +  +L+  G  +++DDF
Sbjct: 568 HLRDPQFVEKLNDICLSHGVSTSSIEIEITESAAYESLDVLTAVFKQLKDYGFHISIDDF 627

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S L+ L  +P D +K + + +  S   + A  IL  +I MA ++    I + I  +
Sbjct: 628 GSGYSSLNMLKDLPADVLKIDRAFLAESNSNKRANDILGYVIRMAGSLGMHTICEGIETD 687

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              K L  +GC+  Q  + A P+  +S  ++L+
Sbjct: 688 EQAKLLGGLGCEMAQGFYFAKPMPSDSFEEILR 720


>gi|119897767|ref|YP_932980.1| hypothetical protein azo1476 [Azoarcus sp. BH72]
 gi|119670180|emb|CAL94093.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 856

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 191/441 (43%), Gaps = 16/441 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I    K    +   A +D LT + N++ F + L   LD S      R T+
Sbjct: 407 LLNVVGSIKAI---HKYTRDLEYYATRDPLTDLYNQRVFWELLDYELDRSQRHA-TRATL 462

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID+D +K IND  G A GD  L   +R + + L+  DILAR  G+ F +IL       
Sbjct: 463 LLIDLDNFKLINDHYGHATGDRFLQQFSRSMQQALRGGDILARYGGDEFVVILPETELEQ 522

Query: 629 KIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             A     +  +  + + +   + I  T SIG A +     T+ ++   A+  MY AK  
Sbjct: 523 GYATARRLLDATRDIALEIPGNDPIRGTVSIGLAVYPDHANTAKDLFLFADNMMYRAKAE 582

Query: 688 GGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G   V         +       +   +  AV    +   + PI+ + D  +  +E L + 
Sbjct: 583 GKERVAVPSEEDVMAVFRDVSEMSMAVLHAVNERRIIPFFQPILGIEDGRVAAVEVLSRL 642

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +      + + +F+ IAE++ +I  ++  ++E     +       +     I  N++ + 
Sbjct: 643 EV-NGQLLRADQFIEIAEKIGVIHRLDAIVIEAALARVRE-----SDFDGDIFFNLSPRA 696

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L+  E    ++++++ +  +P RI    +E   + N       +  L+  G  L +DDFG
Sbjct: 697 LVLAEFARTLRSIVADSGIAPERIVFEITERDTVKNLSLLERFICDLKAEGFRLAIDDFG 756

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S   YL   PFD +K  G  +     +E+    ++SI  +++ ++  ++A+ +    
Sbjct: 757 SGFSSFHYLRRFPFDVLKIEGDFIANMVNSERDRIFVQSITELSRALKIKVVAEFVESAE 816

Query: 923 DIKELTRMGCDYIQDSHVASP 943
            +  L   G DY Q  HV  P
Sbjct: 817 VLALLREFGIDYAQGYHVGRP 837


>gi|254515426|ref|ZP_05127487.1| response regulator/sensory box/ggdef domain/eal domain protein
           [gamma proteobacterium NOR5-3]
 gi|219677669|gb|EED34034.1| response regulator/sensory box/ggdef domain/eal domain protein
           [gamma proteobacterium NOR5-3]
          Length = 660

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 101/566 (17%), Positives = 199/566 (35%), Gaps = 24/566 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +      +         V        +LGL     H     W+  +           + S
Sbjct: 99  LDILPIGILQIRKDFTAVAANDRAGFLLGLDQSDFHN--GTWIDRL-PQTAAGELRSMVS 155

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                    Q    +    +   ++ + +     +     R+I  A D   + +    + 
Sbjct: 156 VADVSPLPFQLSIEIHRPHDTPRYLDLTVSRDLRAGLRADRFIITALDRGAEYRVRTKLQ 215

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+ NR SF    +  ++    +      +  +D+D++K +ND  G AVGD+
Sbjct: 216 HTAEHDPLTGLLNRGSF----SAGINSLDENRMNNLAIAFVDLDQFKAVNDTWGHAVGDE 271

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L     R+    +  D++ARL G+ F I+  +  N   +      + + +   + +   
Sbjct: 272 LLKVAALRLQRCARHSDMVARLGGDEFAIVAFNCPNDESLPALGEKIARRMNGDVTIDGH 331

Query: 651 EITVTASIGFASWT-------SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           +I +  SIG A               +  ++  A+ AMY AK   G     F+       
Sbjct: 332 QIALNTSIGIAHSQWCSEPKLPDGQCAERLMSFADEAMYVAKRSRGKRFHIFQEDLLSKR 391

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW----DHPKWGNISSSEFML 759
                +         +L +       +     VG+EAL +     +H   G     +F+ 
Sbjct: 392 DQRNHKREEYRRIQEDLSVTPVFQPIVGLNGTVGVEALTRIPGGLEHHAGGI---EDFLE 448

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALI 818
            A+           + E        W D +     I + IN+    L   +    + A I
Sbjct: 449 TAKYEPHGVQFLNKLCETAIDAFGRWLDASPDFTAIKLNINVDVLQLYQPDFVADLLAWI 508

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  + +  +E+ +  N +     +  L+  G+ L++DDFGT  + L  L  + F
Sbjct: 509 KHAKLQPEHVCVEITETSLENNVQLLVGSIRALKSAGVRLSIDDFGTGYASLHRLLELEF 568

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   ++ +   +K   +LRSI+ + +     ++A+ +  E   +     G D +Q
Sbjct: 569 DQIKIDRIYISNALRDDKHRGVLRSIVALGRAASMEVLAEGVETEEQARFCRECGIDLLQ 628

Query: 937 DSHVASPLGFNSILKLLKERFPLVKN 962
                 P     +   ++  F     
Sbjct: 629 GFIFQKPAELQELSDYIRTEFQGAGR 654


>gi|77920635|ref|YP_358450.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77546718|gb|ABA90280.1| diguanylate cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 367

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 176/362 (48%), Gaps = 5/362 (1%)

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R+   +   D +AR+ G+ F I+L     S +    A  +  ++A P  +  +E+ ++ 
Sbjct: 6   ARLSHCVSECDTIARMGGDEFAILLAESQGSDEAGQVAALILSTLAQPFFIESQELFISG 65

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLA 714
           SIG A +        E+   A+ AMY AKH+G N+ + +        ++R+ +   L  A
Sbjct: 66  SIGIAFFPHDSANLDELFTYADTAMYSAKHKGRNNFQCYDHELTLHVTERLSLGAALRYA 125

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
             N EL L Y P ++L D  +VG+EAL++W HP  G ++   F+ IAEE  +I  I  ++
Sbjct: 126 CANHELQLYYQPKVQLKDGRVVGVEALLRWWHPVLGMLTPDRFISIAEETGLIVEIGEWV 185

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+   +  + +          + +N++ +  L N+L   ++A++  T      ++   +E
Sbjct: 186 LKTACQAAVDFNRDVAA-SFKVAVNLSCRQFLQNDLAATIEAILKTTGCRGEWLECEITE 244

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S+++ +  +    L  LR +GI++ +DDFGT  S L+YL   P D +K +   +      
Sbjct: 245 SLMIEDNPQVANTLEALRALGITIAIDDFGTGYSALNYLSRFPIDVLKIDRLFINHIDTD 304

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             ++ +++  I +  N+E  I+A+ +    +   L ++GC   Q      P  F+ ++  
Sbjct: 305 PCKVGLVKVFIALGTNLEMQIVAEGVETVSESASLQKLGCGLAQGYLFGKPQPFDVLMTT 364

Query: 953 LK 954
           L 
Sbjct: 365 LS 366


>gi|145600613|ref|YP_001164689.1| biofilm formation regulator HmsP [Yersinia pestis Pestoides F]
 gi|145212309|gb|ABP41716.1| diguanylate cyclase/phosphodiesterase [Yersinia pestis Pestoides F]
          Length = 728

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/502 (21%), Positives = 209/502 (41%), Gaps = 28/502 (5%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH          L+    +     Q        D++          + N N +      
Sbjct: 240 IIHP--LRAMAKELEDIGDHGVLHHQLTLPAHHQDDEL------GVLVRNYNRNQQ---- 287

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D      +   +   + +  +T +PNR  F+  L   +  S   D+    ++VI I+
Sbjct: 288 MLAD------AYADMGRISHRFPVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIE 339

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             ++++  +  A    +L+++ +RI + +   D+LA+LS   F ++      S      A
Sbjct: 340 TLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLA 399

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P+   E  +  +ASIG   + + + T+  M++NA  AM  A H G N +  
Sbjct: 400 RRIMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMV 459

Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F           +  + DL  A+EN +  L   P   +  ++++G EAL++W  P    +
Sbjct: 460 FEPHLIEKTHKRLTQENDLLQAIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYV 519

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             S F+  AEE  M+  +  ++LE   R +  W+ +     + + +NI+   + + +   
Sbjct: 520 LPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLP 577

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ LIS     P ++ L  +E+  + + + +  LL  L+ +G+ + LDDFG   S L Y
Sbjct: 578 HLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRY 637

Query: 873 ---LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
              L  +P   +K + S +    E   AI R I  ++  ++  ++A+ +  E   + L  
Sbjct: 638 LNHLKSLPIHMIKLDKSFVKNLPEDD-AIARIISCVSDVLKVRVMAEGVETEEQRQWLLE 696

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            G    Q    + PL       
Sbjct: 697 HGIQCGQGFLFSPPLPRAEFEA 718


>gi|296274581|ref|YP_003657212.1| diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
 gi|296098755|gb|ADG94705.1| diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
          Length = 846

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 192/442 (43%), Gaps = 18/442 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I    K  E +   A +D LT +  ++ F D +   +  +A   N    +
Sbjct: 410 LLNLVGSIKAIN---KYTENLEFYATRDPLTSLFTQRVFRDLMEYEIKRAARH-NYTFGL 465

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +VID D +K IND  G   GD+ L +L   + +  +  DIL+R  G+ F +IL  E N  
Sbjct: 466 LVIDCDNFKPINDAHGHTFGDEFLKALGNILADSKRSEDILSRYGGDEFTLILP-ECNKE 524

Query: 629 KIADFAIAMRKSIA--MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +    A  +  +++    I+    + ++T SIG A +        E+   A+  MY AK 
Sbjct: 525 EAFSVAQRILNNVSDLELISPDGTKCSMTVSIGMAMYPEHSTIQIELFNIADAMMYEAKT 584

Query: 687 RGGNHVESFRVSSFRSDRVMIK---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N ++              +     +  A++N  +   + PI+ L   +    E L++
Sbjct: 585 MGKNSIKYPTEYDLEEIHKEAEDKSMLVLNAIKNENIIPHFQPIVNLKTNKCEINELLMR 644

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            +      + +++F+  AE L ++  ++  ++E+    I     Q       + IN++ K
Sbjct: 645 IEI-DGEYLPAAKFIETAEALGIVHKMDYMVIEKAFAKINETNYQGL-----LFINLSPK 698

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+ +E    +  L      +   I    +E   + +       +  L+  G S  +DDF
Sbjct: 699 ALIISEFINKIVVLAHNYNINRDNIVFEITERETVKSFSLLERFVQNLKLQGFSFAIDDF 758

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S   Y+   P D +K +G  +   T+ +   A ++SI+ +AK ++   IA+ +  E
Sbjct: 759 GSGFSSFHYIKKFPIDYIKIDGDFIINITKDKKDVAFVKSIVALAKELKVKTIAEFVENE 818

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
             ++ L  +  DY+Q  H+  P
Sbjct: 819 EILEFLKNIDIDYVQGYHIGKP 840


>gi|186700372|gb|ACC91001.1| diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 671

 Score =  362 bits (930), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 247 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 304

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   D+LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 305 QRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 364

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 365 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 424

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 425 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 484

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 485 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITE 542

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 543 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 602

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 603 PEDD-AIARIISRVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 661


>gi|251778164|ref|ZP_04821084.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082479|gb|EES48369.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 1178

 Score =  362 bits (930), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 178/422 (42%), Gaps = 9/422 (2%)

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D LTG      F      +L         +  ++  DI+K+K IN+  G A+G+ VL   
Sbjct: 760  DTLTGALTLAKFEVLANNLLAN---TSYTKFALIYCDINKFKYINETSGYAIGNKVLAHF 816

Query: 596  TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
               I   L   +++ R S + F I+L  +N    + +      +       +    + + 
Sbjct: 817  AHFISSFLFSGELICRASADNFIILLKYDN-IESLQNRFKIFNEKFMEVQKMHFNNLKIP 875

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCL 713
               G     S     S M+  A +A    K    +    +        +    I+  +  
Sbjct: 876  VICGIYLIESEDRDLSLMIDRANIARKTIKGSHKSKYALYDHELHLKITKEKEIENLMFS 935

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++EN+E  +   P I L  + IVG EAL++W  P    I  +EF+ + E+   I  ++ +
Sbjct: 936  SLENNEFLVYLQPKIDLPTQTIVGAEALVRWMSPSKKLIPPNEFIPLFEKNGFIIELDFY 995

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            + E + + + SW  +     I I +N++   + D++    ++ L  K     + I+L  +
Sbjct: 996  VYEEVFKKMNSWIQEGKKV-IPISLNVSRSHINDSDFIPRLKKLTEKYNVPTNLIELELT 1054

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
            ES+   N +     +  L+ +G + ++DDFG+  S L+ L  +P D +K +      +  
Sbjct: 1055 ESIFFDNIQVLLNAIIELKALGFTCSIDDFGSGYSSLNLLKDLPIDVLKLDKEFFPNSSI 1114

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K   I+ +I+ MA+++   +I++ I  +     LT +GCD  Q      P+      K
Sbjct: 1115 NSKEKVIISNIVKMAQDLNIIVISEGIETKEQADFLTEIGCDMAQGYLFDKPMPIKMFEK 1174

Query: 952  LL 953
             L
Sbjct: 1175 RL 1176



 Score =  199 bits (507), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 143/342 (41%), Gaps = 9/342 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++    VI  +         +  + +   +    S +I++D+DI   ++  + +   + G
Sbjct: 126 LIEFLCVIVDITEFKQMQHALELEKKHYKIIAEQSNNILFDYDISTCKMVYSIEFTNLTG 185

Query: 440 --LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
                 +      N    I+  D   F  ++ S    +   +  + R+   +N + W  +
Sbjct: 186 KDYTIPNFVHSTIN-NNLIYKEDLPKFLNLIKSLSSGK-DFITADLRINDINNSYRWFKV 243

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           +   +   +   ++ IG   DI ++K+  E +   A  D LT + N+      +   L  
Sbjct: 244 QATILF-EDKKPIKAIGNIVDIDKEKRENETLKLKAQLDPLTKVYNKMVTKSLIENYLTT 302

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A +      +M+IDID +K +ND LG   GD VL  ++  I ++ K  DI+ R+ G+ F
Sbjct: 303 VAKEK--YHALMIIDIDNFKSVNDNLGHMFGDSVLSEVSSNIKKVFKESDIVGRIGGDEF 360

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I + + ++   I+  A  +             +  ++ SIG A + +   T +E+ K A
Sbjct: 361 IIFIKNISSYEVISQKANDLCTIFKSIYTGENNDFKISCSIGIAIYPTHGTTYNELFKKA 420

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           + A+Y +K+ G N  E F       ++   ++ L      +E
Sbjct: 421 DKALYSSKNNGKNKFELFNPKLDFFNKN--EDLLLNYYTENE 460



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 429 TTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                   ++G     +   + N  +  I+ +D    R  L   V       + E R++ 
Sbjct: 48  YANDGFYKLIGYTCKELKNLLNNQVIKIINTDDLVKLREQL--LVDTTNTYTKSEIRLKK 105

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            + +  W+++       +N +++ ++ +  DITE K+    +      
Sbjct: 106 KNGEIIWILLSGHK-FTTNNNLIEFLCVIVDITEFKQMQHALELEKKH 152


>gi|188587559|ref|YP_001921415.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Clostridium botulinum E3 str. Alaska E43]
 gi|188497840|gb|ACD50976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Clostridium botulinum E3 str. Alaska E43]
          Length = 1182

 Score =  362 bits (930), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 178/422 (42%), Gaps = 9/422 (2%)

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D LTG      F      +L         +  ++  DI+K+K IN+  G A+G+ VL   
Sbjct: 760  DTLTGALTLAKFEVLANNLLAN---TSYTKFALIYCDINKFKYINETSGYAIGNKVLAHF 816

Query: 596  TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
               I   L   +++ R S + F I+L  +N    + +      +       +    + + 
Sbjct: 817  AHFISSFLFSGELICRASADNFIILLKYDN-IESLQNRFKIFNEKFMEVQKMHFNNLKIP 875

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCL 713
               G     S     S M+  A +A    K    +    +        +    I+  +  
Sbjct: 876  VICGIYLIESEDRDLSLMIDRANIARKTIKGSHKSKYALYDHELHLKITKEKEIENLMFS 935

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++EN+E  +   P I L  + IVG EAL++W  P    I  +EF+ + E+   I  ++ +
Sbjct: 936  SLENNEFLVYLQPKIDLPTQTIVGAEALVRWMSPSKKLIPPNEFIPLFEKNGFIIELDFY 995

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            + E + + + SW  +     I I +N++   + D++    ++ L  K     + I+L  +
Sbjct: 996  VYEEVFKKMNSWIQEGKKV-IPISLNVSRSHINDSDFIPRLKKLTEKYNVPTNLIELELT 1054

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
            ES+   N +     +  L+ +G + ++DDFG+  S L+ L  +P D +K +      +  
Sbjct: 1055 ESIFFDNIQVLLNAIIELKALGFTCSIDDFGSGYSSLNLLKDLPIDVLKLDKEFFPNSSI 1114

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K   I+ +I+ MA+++   +I++ I  +     LT +GCD  Q      P+      K
Sbjct: 1115 NSKEKVIISNIVKMAQDLNIIVISEGIETKEQADFLTEIGCDMAQGYLFDKPMPIKMFEK 1174

Query: 952  LL 953
             L
Sbjct: 1175 RL 1176



 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 143/342 (41%), Gaps = 9/342 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++    VI  V         +  + +   +    S +I++D+DI   ++  + +   + G
Sbjct: 126 LIEFLCVIVDVTEFKQMQHALELEKKHYKIIAEQSNNILFDYDISTCKMVYSIEFTNLTG 185

Query: 440 --LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
                 +      N    I+  D   F  ++ S    +   +  + R+   +N + W  +
Sbjct: 186 KDYTIPNFVHNTIN-NNLIYKEDLPKFLNLIKSLSSGK-DFITADLRINDINNSYRWFKV 243

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           +   +   +   ++ IG   DI ++K+  E +   A  D LT + N+      +   L  
Sbjct: 244 QATILF-EDKKPIKAIGNIVDIDKEKRENETLKLKAQLDPLTKVYNKMVTKSLIENYLTT 302

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A +      +M+IDID +K +ND LG   GD VL  ++  I ++ K  DI+ R+ G+ F
Sbjct: 303 VAKEK--YHALMIIDIDNFKSVNDNLGHMFGDSVLSEVSSNIKKVFKESDIVGRIGGDEF 360

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I + + ++   I+  A  +             +  ++ SIG A + +   T +E+ K A
Sbjct: 361 IIFIKNISSYEVISQKANDLCTIFKSIYTGENNDFKISCSIGIAIYPTHGTTYNELFKKA 420

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           + A+Y +K+ G N  E F       ++   ++ L      +E
Sbjct: 421 DKALYSSKNNGKNKFELFNPKLDFFNKN--EDLLLNYYTENE 460



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 429 TTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                   ++G     +   + N  +  I+ +D    R  L   V      ++ E R++ 
Sbjct: 48  YANDGFYKLIGYTCEELKSLLNNQVIKIINTDDLVKLRKQL--LVNTTNNYIKSEIRLKK 105

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            + +  W+++       +N +++ ++ +  D+TE K+    +      
Sbjct: 106 KNGEIIWILLSGHK-FTTNNNLIEFLCVIVDVTEFKQMQHALELEKKH 152


>gi|114705050|ref|ZP_01437958.1| hypothetical protein FP2506_08936 [Fulvimarina pelagi HTCC2506]
 gi|114539835|gb|EAU42955.1| hypothetical protein FP2506_08936 [Fulvimarina pelagi HTCC2506]
          Length = 684

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 198/427 (46%), Gaps = 16/427 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTGI NR  F   +      +    +    +++ D+D +K IND LG  +GD++L ++
Sbjct: 250 DGLTGIGNRVGFDRHV------AGLPKDADCAIILFDLDNFKSINDGLGHHIGDELLRTV 303

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ E+    + + R+ G+ F ++L  +    +       + ++IA+PI + ++ + ++
Sbjct: 304 ASRVREICHDDEFVCRIGGDEFAVVLSGKTAVARGEVACRHILQAIAVPIIIGKQRLDIS 363

Query: 656 ASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
           AS+G +     + I+   + + A+ A+Y AK+ G      +             I  D+ 
Sbjct: 364 ASVGISKLPSPAGISIESLTRQADAALYAAKNAGRGRYRVYSEELASEPARAEPIHYDID 423

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + E+++ + PI  L     +G E+L +W H   G I++ E M +AE    I  + L
Sbjct: 424 GAIRSGEIHVEFQPITCLKTGRTLGFESLSRWRHLGLGEIATPEIMPLAENNGAIFDLGL 483

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +LE   R+   W +       F  IN++ ++L+D    + +  ++ +    P RI+   
Sbjct: 484 LVLEETCRNAAKWPETY-----FAAINVSPRELVDPSFLQRVSEIVVRHNIQPQRIEFEI 538

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E +  G+ E     +  LR+ G S  L  FG   S L+ + + PFD +K + SL+  S 
Sbjct: 539 AEPLFSGDEEELLNAIQTLRESGFSAALAKFGAGHSSLASIHHFPFDKIKIDRSLVAASE 598

Query: 893 EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               A  I+  I   AK+      A+ I      + +   GCD  Q     +PL  + + 
Sbjct: 599 TNERAADIVSLICKFAKSYGIKAGAEGIETLSQAERMREQGCDIGQGLLYDTPLSADDVE 658

Query: 951 KLLKERF 957
           KL++E  
Sbjct: 659 KLIREEQ 665


>gi|291538587|emb|CBL11698.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 728

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/428 (23%), Positives = 185/428 (43%), Gaps = 15/428 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTGI N+       +++L+      +     + +DI+K++ IN   G++ GD 
Sbjct: 136 YRAEYDILTGIYNKTHMFQATSSMLE---RYPDRHFAFVRMDIEKFQLINSFFGMSAGDM 192

Query: 591 VLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           +L  +   +   ++        R+  + F   +  EN    +  F          P++  
Sbjct: 193 LLKYIADLLICAVRNRSDVTFGRMDADIFCFCVSYENTKELVESFDKMRDILSRYPLDFD 252

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
              I      G       KIT   M   A LA  H K     +   +  ++S        
Sbjct: 253 IVPIF-----GVYLIAGKKITPDHMYDRANLAAKHCKGNYIRNYAFYTRQMSQEIEKEQR 307

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I   +  A+EN E  + Y P   L D +I G EAL++W HP+ G ISS EF+ + E    
Sbjct: 308 IVNSMKSALENHEFVVFYQPKYGLSDNQIAGAEALVRWKHPERGMISSGEFIPVFERNGF 367

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++ E+    +  W D+    P+ I +N++   L + ++   +  L+        
Sbjct: 368 ITKLDYYVWEQTCIQLRKWMDEGKN-PLPISVNLSRISLYNKDIVNVICNLVDSYRIPRR 426

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++  +ES    NP+  + ++ RLR+ G  + +DDFG+  S L+ L  I  D +K +  
Sbjct: 427 LFQVELTESAYNTNPKAVQDMMQRLREEGFYILMDDFGSGYSSLNVLKDIVVDVLKMDMK 486

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
              G   +     I+ ++I MAK +   ++A+ +     ++ L  +GC+Y+Q  + A P+
Sbjct: 487 FFAGDDREGRGENIMAAVIRMAKWLNMPVVAEGVERIEQVEFLRSIGCEYVQGYYFAKPM 546

Query: 945 GFNSILKL 952
                 KL
Sbjct: 547 PVEEYEKL 554


>gi|323497315|ref|ZP_08102334.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323317672|gb|EGA70664.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 639

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 95/441 (21%), Positives = 193/441 (43%), Gaps = 7/441 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++ + + +      D  TG  NR +      ++L+  +   + +  V+ +     ++
Sbjct: 189 IDKRRAAEQKVHYQQRHDLGTGFLNRAALEHETDSLLNTVSEHTSKQVAVVHVGFANGRR 248

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +    G    +++LV   +++G+L  +  + AR +      I  S    + I      + 
Sbjct: 249 VQSKYGYGAWENILVQFHKKLGDLSSYDVVTARPTSTDLAFIFTSSQIDVDIHTLCGQLI 308

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
           +      ++   ++ + + IG A+     +    +LK A  AM   K  G      S  +
Sbjct: 309 EVSQSEFDIEGEKLHLHSYIGIATS-KDTLNGQSILKYAVEAMQSCKDSGHKFSFYSQDI 367

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S  +     ++  L  AV N +L L + P +     + +G EAL++W HP  G+IS+   
Sbjct: 368 SDIQKHINQLESYLLQAVRNDDLLLYFQPKVTPTTHKWLGAEALLRWRHPVLGDISNETL 427

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  F+L    +    W D        + +N+++  L + +    +  L
Sbjct: 428 IHLAEQNGLIFEVGSFVLRSAIQKAAEWVDHVAD--FKLGVNVSAVQLQNPQFVSQVSDL 485

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++        ++L  +ES ++ +   +R  L  L +IG++L+LDDFGT  +  +YL   P
Sbjct: 486 LTTYQLPAHYLELEVTESGLIADEVVARNTLTALSEIGVTLSLDDFGTGYASFNYLKKFP 545

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + S +    +  +   I+RSII +AK +E  +  + I  E     +   GCD  
Sbjct: 546 FDAIKVDKSFIHQLDDSVEDREIVRSIINIAKKLELQVTVEGIEKESHEAFIIEEGCDVA 605

Query: 936 QDSHVASPLGFNSIL-KLLKE 955
           Q      P+  +      L++
Sbjct: 606 QGYLYGKPMPCDVFESSFLQQ 626


>gi|237806782|ref|YP_002891222.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Tolumonas auensis DSM 9187]
 gi|237499043|gb|ACQ91636.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Tolumonas auensis DSM 9187]
          Length = 808

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 192/462 (41%), Gaps = 25/462 (5%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            + G+ + +   K+ LE     AF D LTGI NR +F+  L  +++           ++ 
Sbjct: 346 HFSGMLSQLEVSKRELERA---AFIDPLTGIGNRSAFIRCLQNMVERHNEQP-FHFYLVQ 401

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-------DILARLSGNRFGIILI- 622
           + +     IN+  G   GD  L  ++R + +LL            LAR   + F   +  
Sbjct: 402 LKLHNLTWINNTFGAKTGDRALQLISRLLQQLLHEHILANAKCVCLARSGSDEFIFSVPS 461

Query: 623 ---------SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
                                  +      P+ L    I +  S G   +        E+
Sbjct: 462 YYPVDGNGQDTAALPDANAICELLAARFGQPVMLGSYSIKLRFSAGIVRFPDIANGVEEL 521

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLM 731
           ++    A   A    GNH         +  R    ++ +L  A+   + ++VY P   + 
Sbjct: 522 MEGVSKARRLASRYQGNHWLQLDNEMVQHIREDRWLESELRQAIVGQQCFVVYQPQYDIH 581

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              IVG EAL++W HP +G +    F+ IAE    I  I+L++L++  + +     +  +
Sbjct: 582 SGHIVGAEALLRWRHPSYGMVPPDRFIPIAEVSGQIMDIDLWVLDQACQCLGKLTAK-GI 640

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + +N +  +L +    + +++ + +    P R  +  +E+ ++   E +++ +  L
Sbjct: 641 TDFRLAVNASGTELSNPAYPDAVRSTLLRYDIPPHRFGIEITETAIVELDEVAQMTVRAL 700

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           ++IG+ + LDDFGT  + LS+L  +  D +K + S +    E    ++ SI+ +A     
Sbjct: 701 KEIGVEIELDDFGTGYTSLSHLTNLQLDVLKIDRSYIMQL-ESNPKLVDSILQLADAFSL 759

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +IA+ +     +K L +  C   Q   ++ P+    ++ LL
Sbjct: 760 RVIAEGVETIEQLKLLQQKRCHMAQGFLLSKPITEEELIALL 801


>gi|111017533|ref|YP_700505.1| hypothetical protein RHA1_ro00511 [Rhodococcus jostii RHA1]
 gi|110817063|gb|ABG92347.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 746

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 120/473 (25%), Positives = 220/473 (46%), Gaps = 12/473 (2%)

Query: 497 IRIRPMSNSNGDILRYIGIANDITE---QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
               P   ++ D+     +A  ++    +  +   +   + +D LTG+PNR +   R+T 
Sbjct: 266 HSAHPRDYTDRDVAFLRAVAAVLSAAIGRIDTETRVRQQSSRDPLTGLPNRTAAYRRITA 325

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L  +  D  L    +++D+D +K +ND LG A GD  L+ L  R+   ++  D +ARL 
Sbjct: 326 ALHTAHQDHTLLAL-LLVDLDDFKVVNDSLGHAHGDAALIRLAERLVGAVRPADTVARLG 384

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++      +      A  +  ++  P +     + + ASIG A       T+ E+
Sbjct: 385 GDEFVLVCEDIGTADAATALADRITTALRTPDHSARTPVPLRASIGIALS-DQTCTADEL 443

Query: 674 LKNAELAMYHAKHRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
           ++ A+LAMY AK  G      +      S      + +  DL  A++  +L L+Y PI+ 
Sbjct: 444 IRRADLAMYRAKSAGAGGHALYHPGDRDSYDADRVLRMSTDLRTALDRDQLTLLYQPIVD 503

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L +  +V +EAL++W HP  GNIS +EF+ +AE   +I  +  + L    R  ++W    
Sbjct: 504 LRNGAVVAVEALVRWAHPTLGNISRTEFVAVAERTGLIGPLGSWGLRTACRQGVAWPTH- 562

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + +N+++  L D    + +  +++ T     R+ L  SE+       R+  +L 
Sbjct: 563 PGTDVRVHVNVSTVQLRDPIFADQVADILADTGLPAHRLGLEISETASASVTARTVGILT 622

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIP-FDTVKFNGSLMTGS-TEKRIAILRSIIPMAK 907
            L ++G+ L LD  GT    L YL   P FD++K + S +T     +  A++ + + +A+
Sbjct: 623 ALHELGVVLLLDHLGTGHGPLGYLIRYPIFDSLKIDRSYITALPGPRPEAVVTAFVTIAR 682

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
               T+I   +   I +  L   GCD  Q S++A P   ++I    ++     
Sbjct: 683 AYGATVIGNGVETRIQLDTLHACGCDLAQGSYLAEPAPADAIPAQQRDHRAGT 735


>gi|90413987|ref|ZP_01221971.1| hypothetical protein P3TCK_06622 [Photobacterium profundum 3TCK]
 gi|90324909|gb|EAS41430.1| hypothetical protein P3TCK_06622 [Photobacterium profundum 3TCK]
          Length = 536

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 101/446 (22%), Positives = 203/446 (45%), Gaps = 17/446 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + +        NA  D LTG+ NRQ     +        T    +  +M+ID+D +K+
Sbjct: 90  INQYQIMAINERFNAQHDTLTGLKNRQFMWQHI-----KLKTLSKQKFALMLIDLDNFKQ 144

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDIL------ARLSGNRFGIILISENNSLKIAD 632
           +ND  G   GD +L ++  RI  + K    +       RL G+ F IIL       ++ D
Sbjct: 145 VNDAFGHLAGDALLKAMATRIQAIFKKKHTINNSVELIRLGGDEFAIIL-DYTKKNEVTD 203

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNH 691
               ++  +  P  +    + +  SIG A +     + +E++K+A+ AMY AK    G  
Sbjct: 204 CIQLLQNILKKPFFIRGTMVHIQMSIGIACYPEHSCSITELIKSADAAMYKAKKQASGFC 263

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             S          + + + +  A+  +E  L Y PI       +  LEALI+W       
Sbjct: 264 FYSIDYERSSIQHIQLNDKIRNALAKNEFSLHYQPIFENDGRTVYSLEALIRWQQQDGSY 323

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS S F+ +AE+  +I +I  +++      +  W+D  +   I   IN+++ DL ++ + 
Sbjct: 324 ISPSLFIPVAEKAGLISSITQWVIHAAFTQLEIWQDSGHYRHIQ--INLSACDLQNDGIV 381

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + ++  +     +P+++ L  +ES ++ +   ++  L +L  +GI+L++DDFG+  + L+
Sbjct: 382 DYLKEQLDTFNINPNQVILEITESAMIADITLAKNALRKLYALGITLSVDDFGSGYTSLT 441

Query: 872 YLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +P   +K +   +   +      AI+ SI  +A +I   ++ + I  +  + +++ 
Sbjct: 442 MLSDMPIKQIKIDAQYVIEMSRKNNNFAIISSIAFLANSIGAKVVIEGIENQKVLTKVST 501

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           +    +Q   ++ P+    +  +   
Sbjct: 502 LETALLQGHFLSHPMKAEQLEPMFSS 527


>gi|312883353|ref|ZP_07743079.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368969|gb|EFP96495.1| GGDEF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 620

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 95/440 (21%), Positives = 181/440 (41%), Gaps = 7/440 (1%)

Query: 521 EQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +++ + E  L      D  TG  N+Q+       +L+           VM +       I
Sbjct: 178 DRRLAAEQQLVYQKSYDPATGFLNKQTLEHETEKLLNEVEYSKGKLVGVMHMHFTNGTTI 237

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G  V D +LV   RR+ +  +   I AR   N    +   ++++  +   +  + +
Sbjct: 238 ESQYGYTVWDKLLVEFRRRLEKHNELEVITARPVTNELVFVWKMQDDTRDLKALSSELIE 297

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVS 698
           +      +    I +   IG ++ T     + ++L  A  AM    K +   H  S  +S
Sbjct: 298 TSRSTFVIDNNTIHLNCCIGAST-TKDTNDARQLLSFAAAAMSSCQKSKQNFHRYSDSLS 356

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +        +  L  AV +  + + + P +  +  + +G EAL++W HP  GNIS+   +
Sbjct: 357 NVNRYMEQQEAYLLQAVRDKNISIYFQPKVCPIQRKWIGAEALLRWQHPNLGNISNENLI 416

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+  +I  +  F+L         W          + +N++   L      E ++ L+
Sbjct: 417 HLAEQNGLIYEVGSFVLHSAIEIAAEWSKSI--KQFKMSVNVSPLQLQCPRFVEQIKQLL 474

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           SK   +P  ++L  +E  ++ +   ++  L  L+K+G++L+LDDFGT  +  +YL   PF
Sbjct: 475 SKHSLAPENLELELTEGSLIADEIVAKATLVELKKLGVTLSLDDFGTGYASFNYLKKFPF 534

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           I+ SII +AK ++  +  + I        +   GC+  Q
Sbjct: 535 DVIKIDKSFIENIERDVTDREIVTSIIHVAKKLQLAVTVEGIETVQQENFIIDQGCEIGQ 594

Query: 937 DSHVASPLGFNSILKLLKER 956
                 P+        L  R
Sbjct: 595 GFLYGKPMSLEEFESKLLSR 614


>gi|289209155|ref|YP_003461221.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288944786|gb|ADC72485.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 578

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/452 (23%), Positives = 210/452 (46%), Gaps = 12/452 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI--DKYK 577
           ++ ++    +L  A+ + +TG+PNR+S    +  ++  +   +     V VI +  + Y 
Sbjct: 121 SQLRQHATRLLDQAYHNPVTGLPNRESLEQHVRQLMTQAEGSEQPATRVFVISLQMENYA 180

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIA 636
                LG A    +L  +  R+  +   PD  +  +  + F ++L    +  +       
Sbjct: 181 DTISALGFAAERPLLTGIAERLQAVAGGPDTLVYHIHDDHFALLLPH-RSRQECLATTQE 239

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESF 695
             + +  P  +L   + V A  G +S+   +      +L  A +AM+ A   G  +    
Sbjct: 240 AVEELQAPFEVLGLPVYVGAHAGVSSFPFHEQDDPQSLLTKAWMAMHEASQSGRRYRTYD 299

Query: 696 RVSSFR-SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           R S+      V +  +L  A+E  ++ L Y P + L   E+ G EAL++W HP  G +  
Sbjct: 300 RRSNDAGRQTVELLGELQSALEGDQIQLHYQPKVTLQRGELCGFEALLRWQHPHRGQVPP 359

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AE   +I A+ L +L+    D++  R+Q    P  + IN+++++ LD +  + +
Sbjct: 360 DRFIAQAERTGLIHALTLKVLDLAIADLLVLREQGIQAP--VSINVSARNFLDPDFAQTI 417

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              I         ++L F+E+ +M +P++    L RL + G++L++DDFGT  S L+YL 
Sbjct: 418 IERIEAAGLPACSLELEFTETALMADPDQVIEALRRLTERGLALSIDDFGTGYSSLAYLR 477

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P  T+K + + ++    +     I R+ + +A ++   ++A+       +  L  + C
Sbjct: 478 RLPITTLKVDQTFVSHMATQRVDEQITRAAVGLAHDLGLKVVAEGAEDSQTLDMLRELCC 537

Query: 933 DYIQDSHVASPLGFNSILKLLKER--FPLVKN 962
           D +Q   VA P+ F+  L+  + +   P ++ 
Sbjct: 538 DAVQGFGVARPMPFSETLQWARHQTVEPSLRR 569


>gi|323490910|ref|ZP_08096105.1| phytochrome-like protein cph2 (bacteriophytochrome cph2)
           [Planococcus donghaensis MPA1U2]
 gi|323395390|gb|EGA88241.1| phytochrome-like protein cph2 (bacteriophytochrome cph2)
           [Planococcus donghaensis MPA1U2]
          Length = 725

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/430 (24%), Positives = 193/430 (44%), Gaps = 12/430 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E IL  A+ D  T +PNR  F + +  +L  S         V  I  D+Y K+ D  
Sbjct: 301 RQHEEILRLAYSDGDTNLPNRNYFRNEIDKLLKKSKEGF-----VAFISTDEYTKVVDQY 355

Query: 584 GIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G   GD ++  + +R+        +++AR S +   + L S    +KI ++   + +  A
Sbjct: 356 GHRAGDALMGEIGKRLMLHQNSSENLIARFSDS--TLSLYSITPFVKIPEYLEQLMRGFA 413

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            PI + + E+ +T  IG A     +  S E+++ ++ A+  AK R G  +  F       
Sbjct: 414 DPIKVGDIELFLTLKIGVAIVMPHQKDSEELIRCSDSALSQAKLRTGEAICYFESELDEF 473

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +    +L  A+  +E+ +   P + L   E++  EAL +W  P  G I    F+  
Sbjct: 474 LMRDLRVANELTAALNRNEIGVHLQPKVDLETGEVLSFEALARWTSPDLGVIPPDIFIPA 533

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I+ +   +L+++   +    DQ       + INI++     +     +  + + 
Sbjct: 534 AEKNGKIRLLEKSILKQVLEWMKKRVDQGLKMR-QVAINISADHFFHHSFVPNLLDMTTA 592

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  I+L  +E +   + E +  +   LR  G + ++DDFGT  S LSYL  +P + 
Sbjct: 593 YGIEPKWIRLEITERIGFVDIETANKVFKHLRYCGFTTSIDDFGTGYSSLSYLQKLPIEE 652

Query: 881 VKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S ++       +AI+++II +A N+    +A+ +  + + K L R+GC   Q   
Sbjct: 653 LKIDRSFISNMDEPGTLAIIQTIIQLASNLNMHAVAEGVETDKERKILLRLGCKEGQGYF 712

Query: 940 VASPLGFNSI 949
              P+  N  
Sbjct: 713 FYKPMPLNEA 722



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            V        ++G +     G    +L              + + +      + +E    
Sbjct: 40  IVYANDAFFKMIGYSEEETLGRNGRFLHG--EKTSQKASENIHACIASGETGI-FEIVNY 96

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +    W  + I+P++    ++   + +  DITE+K++   I   
Sbjct: 97  RKNGTPFWNELSIQPLTFPEKNLKFTLLLQRDITERKRTEAMIKLQ 142


>gi|148258783|ref|YP_001243368.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146410956|gb|ABQ39462.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 563

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 101/548 (18%), Positives = 216/548 (39%), Gaps = 16/548 (2%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           +  + +  +   G   + WD+  D +  +  +  +              +   I      
Sbjct: 4   ELPQTATILSSLGQAAFVWDLASDVIVWSDHVGAVFPDVPLPQLCNGTEFGKLIEPERGV 63

Query: 463 NFRTILDSFVGY--RRGRLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
               +      +       + E+ VR  +     W+       +  +G   R  GI    
Sbjct: 64  RSEAMRQVAPLHGVDGTPYRIEYGVRTHSAAPLIWVEETGCWFAGPDGRPARAQGIVRIN 123

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            E+    E +L  +  D LTG  NR   L  L  +++ S          M+I ID   +I
Sbjct: 124 NERHARDEQLLKLSRHDPLTGELNRTHLLATLAEVIEESQR-FRFACAFMLIGIDHLARI 182

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  V D V++ + +RI   L+  D L R SGN+FG+IL +             +  
Sbjct: 183 NDAFGFDVADGVVLEVAQRIRARLRGGDTLGRFSGNKFGLILKNCTMDDMTVAAERFLAA 242

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG----GNHVESF 695
                +      + VT +IG  S      +  E +  A   +  AK R          + 
Sbjct: 243 VRDEVVPTKSGPVAVTVTIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWRPNV 302

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              + R   + + +++  A+    +   + P++     +    E L++        + + 
Sbjct: 303 ERDAQRKVNIRVTDEIVTALNERRIVTAFEPVVHADTRQTAFYECLVRMRQDDGRAVLAP 362

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           + + +AE L +I+ ++  +LE +  ++ S       P + + +NI+ +  +D +    ++
Sbjct: 363 DIVPVAERLGLIRLVDHRILELVVAELASA------PDVTLSLNISPETTMDPDWWASIE 416

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +++        R+ +  +E+V + + +  R  + RL+ +G  + +DDFG   +    L  
Sbjct: 417 SMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRNLRK 476

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D VK +G+ +     +    A +++++ +A+ ++   +A+ +  +  +  L   GCD
Sbjct: 477 LGVDIVKIDGAFVQNLARSADDRAFVQTLVELARRLQIKTVAEWVQDDSSVTLLRDWGCD 536

Query: 934 YIQDSHVA 941
           YIQ   + 
Sbjct: 537 YIQGRLIG 544


>gi|153826761|ref|ZP_01979428.1| signal protein domain/GGDEF domain protein [Vibrio cholerae MZO-2]
 gi|149739412|gb|EDM53652.1| signal protein domain/GGDEF domain protein [Vibrio cholerae MZO-2]
          Length = 791

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 203/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+        S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SESFRLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|169826590|ref|YP_001696748.1| phytochrome-like protein cph2 [Lysinibacillus sphaericus C3-41]
 gi|168991078|gb|ACA38618.1| Phytochrome-like protein cph2 (Bacteriophytochrome cph2)
           [Lysinibacillus sphaericus C3-41]
          Length = 718

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 205/436 (47%), Gaps = 13/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   I   A+ D  TG+PNR SF++ L    +           + ++   ++ ++ ++ 
Sbjct: 292 RTQRKIWDLAYTDITTGLPNRHSFVNCLEKEAER-----GQNGYIKIVKPSEFHQVVELY 346

Query: 584 GIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G   GD++L  L +R+  +     + +AR + +   +IL +   +  + ++   ++++I 
Sbjct: 347 GREFGDELLRQLAKRLEQDKPGDREYIARFTSS--SLILSTMTFNENLNNYERRIKETIR 404

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  +  ++I +T   G AS+ +  I  ++ ++ A+ A+  A  + G H E F       
Sbjct: 405 QPFIIGGKQIYITLKTGIASF-NDAIKINDAIRFADNALSSATDKPGTHTEIFTTEKNDV 463

Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +     L  A++N E+ +   P + L + EI  +EAL +W  PK G +S + F+ +
Sbjct: 464 LVQQMTVLNHLSQAIKNKEITVHLQPKVDLRNGEIQSIEALARWVSPKLGFVSPAIFIPV 523

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE    ++ I++ +LE +   +   R +     + I +NI+          +    L+ K
Sbjct: 524 AESAGKVREIDVQVLEIVLSWLAE-RQKVGKKLVKIAVNISPDHFYYTHFVQDTLKLVRK 582

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               PS I L  +E++ + + + +  ++  L+  G   ++DDFGT  S LSYL  +PF  
Sbjct: 583 YEIDPSNIILEVTENIGLVDFQSAFTIIQELKSYGFKTSVDDFGTGFSSLSYLQQLPFTE 642

Query: 881 VKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K + S +        +AI+RSII +A N+    +A+ I  E  ++ L  +GC   Q   
Sbjct: 643 LKIDRSFINALEDPATLAIVRSIIQLALNLGMISVAEGIETEEQVEILRALGCTVGQGYF 702

Query: 940 VASPLGFNSILKLLKE 955
              P+    +  +L +
Sbjct: 703 YFKPMAIEQLDTILDQ 718


>gi|124515615|gb|EAY57125.1| Diguanylate cyclase/phosphodiesterase [Leptospirillum rubarum]
          Length = 719

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 201/446 (45%), Gaps = 15/446 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            IG +  I+   ++L  +   +  D LTG+ NR+ F + +   +  S    + +  +++I
Sbjct: 277 VIGSSKVIS---RTLSELEYYSTHDPLTGLHNRRYFNEMIGYEIQRSERHGH-KFCLLMI 332

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G   GD VL  L + +   ++  DI+ R  G+ F ++L SE +     
Sbjct: 333 DLDNFKDVNDSYGHLDGDRVLNQLGKIVTGTVRKGDIVCRFGGDEFVVLL-SETSLSGGC 391

Query: 632 DFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             A  +R++I              VT S+G  ++        ++L   +L +Y AK RG 
Sbjct: 392 TLAETVREAIQTWSFGTTDRGSFHVTVSVGIVAYPQDGNQIEDLLAGLDLVLYRAKERGR 451

Query: 690 NHVESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           N V S R        V +     E+   A+    +   +H I       ++G E+L +  
Sbjct: 452 NTVASSRDLRTDIRSVRLFRLHTEEFRQALGEERIVPYFHGIYAAGSGRLLGYESLARLL 511

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ--ANMPPIFILINIASK 803
           +     + + +F+ +A +  ++  ++ FMLE+  R +    D          + +N++S+
Sbjct: 512 NTDGTVVQAQDFLDLARKYGLLTTLDRFMLEKSLRTVAHHPDFSVFENGIPVLFVNLSSQ 571

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           ++ ++   +  + L  +   +PSR+     ES  + + +  ++ L  LR  G S  LDDF
Sbjct: 572 EIENHGFLDLARELCDRFGVAPSRLVFEIVESDAIQDLKSMKVFLQELRSKGFSFALDDF 631

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  +   YL  + F+ VK +G+ +     +    A++ ++I + + I T  IA+ + G 
Sbjct: 632 GSGYNSFHYLRELHFEYVKIDGAFVRNIVHSPIDRALVGNLIRLCREIGTKTIAEYVEGP 691

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFN 947
                L  M  D++Q  H   P   +
Sbjct: 692 EIHAILREMSVDFVQGYHFGLPGPLS 717


>gi|34557884|ref|NP_907699.1| diguanylate cyclase [Wolinella succinogenes DSM 1740]
 gi|34483602|emb|CAE10599.1| DIGUANYLATE CYCLASE [Wolinella succinogenes]
          Length = 541

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/556 (19%), Positives = 233/556 (41%), Gaps = 46/556 (8%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFR 465
              A+  S  IV   D+    V        I G +   + G   N +   H +  ++ FR
Sbjct: 12  YKKALDESN-IVSITDLEGRIVYANEKFCEISGYSQEELLGKPHNIIR--HPDTPKETFR 68

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + ++    +    Q   + R  D + + +   I P+ +  G I+ Y+G+ +D+T     
Sbjct: 69  ELWNTIQAGKT--WQGLIKNRTKDGRDYLVHSTIIPIFDQEGKIIHYMGVRHDLT---PL 123

Query: 526 LEGILCNAFQ--DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +E     A    D+LT +PNR   L+ +TT+           PT+ +I+ID + +IND  
Sbjct: 124 IEKEQLIARHIKDDLTHLPNRSKLLEDITTL---------PCPTLSLINIDGFSQINDFY 174

Query: 584 GIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLK-IADFAIAMRKSI 641
           G+++GD+VL S    + E        + RL  + F I+  S  +           + +  
Sbjct: 175 GLSIGDEVLKSFAHLLQEAFGEKQHRIYRLHSDEFAILTPSPQDEEDHFQRLKNFLMQLK 234

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA---KHRGGNHVESFRVS 698
             PI     +I ++A+ G A+          ++  A +A+ +A   K     + E+  + 
Sbjct: 235 QEPILFEAGKIYLSATAGSAA------EKETIMGKANMALRYAREEKQLHKVYDETLLIK 288

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             + + +     +  A+    +   + PI  + +  I   EAL++    +   I+  +F+
Sbjct: 289 QRQEENLEWIHKIQGAIRQERIISYFQPIYDVKNRRISKYEALVRLMDEEGAIIAPWQFL 348

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IA++      I   ML   A    + +       + I +N+ ++DL   ++ + + +L+
Sbjct: 349 DIAKQSRQYPLITQTMLSHAAIAAKTHQ-------VSISVNLTTEDLTHADVLKHIDSLM 401

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR-KIGISLTLDDFGTKCSLLSYLGYIP 877
                +P  +    +E+  + N +  R  +  ++ K G  + +DDFG+  S   +L  + 
Sbjct: 402 RVYECAP-YLIFEITETEEIRNYDDVRNFIRLVKGKYGSKIAIDDFGSGYSNFEHLLELE 460

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +GS+++   +  +   ++ +I+   + +    +A+ +  +     +   G D+ 
Sbjct: 461 FDYLKIDGSIISKLETHGQSHVLIDAIVAFTQKLGIKTVAEFVSSKAIFDLIKEKGIDFA 520

Query: 936 QDSHVASP----LGFN 947
           Q   + +P    L   
Sbjct: 521 QGYFIGTPQKELLPAE 536


>gi|313673342|ref|YP_004051453.1| diguanylate cyclase/phosphodiesterase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940098|gb|ADR19290.1| diguanylate cyclase/phosphodiesterase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 786

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 197/444 (44%), Gaps = 18/444 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  +G         K  + +     +D LT + N++ F + L   +  ++ + N + ++
Sbjct: 351 LMNVVGSVK---AMAKYTKQLEYYTTRDPLTNLFNQRVFWEVLGYEVGRASRN-NYKFSI 406

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++DID +K IND  G ++GD ++  +   I + L+  DILAR SG++F  IL  E    
Sbjct: 407 LLVDIDNFKSINDSYGHSIGDYIISEMAGIIRQCLRKGDILARYSGDQFVAILP-EAGEE 465

Query: 629 KIADFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +  +    ++ ++      ++ +++I +T S G A +      + ++   A+  +  AK 
Sbjct: 466 QAFNVGKRIQDTVFAHTFKSIDDKDIKLTISAGIAIYPEHADNAKDLFIFADNVLKRAKD 525

Query: 687 RGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N V              I +    +  AV    +   + PI+R    EI   E L +
Sbjct: 526 EGKNKVVIPTQEEVYEVFKAISDKTILVTKAVSEKRIKPYFQPIMRNSTGEIDCCEVLSR 585

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            + P+ G +++ EF+ IAE++ +I  +++ +LE    ++I    +       + +N++ +
Sbjct: 586 IETPE-GVLNAYEFIEIAEKINLISRLDIILLENAIIEVIKSNFKGL-----LFVNLSPR 639

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+ +E    +  +  +  +  SR+    +E   + N       +  LR  G    +DDF
Sbjct: 640 SLVMSEFIPEVMRITKEYNFDRSRLVFEITERETVKNLSLLEKFIANLRVEGFKFAIDDF 699

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+      YL   P D +K  G  +       K   +++++  +A+  +   IA+ +  +
Sbjct: 700 GSGFCSFQYLRRFPVDFIKIEGEFVRNILNDRKDHILVKTLSIIAREFDIKTIAEYVESK 759

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
             + E+  +G  Y Q   +  P  
Sbjct: 760 ELLDEMKNLGITYSQGYFIGKPSP 783


>gi|160936666|ref|ZP_02084033.1| hypothetical protein CLOBOL_01557 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440457|gb|EDP18202.1| hypothetical protein CLOBOL_01557 [Clostridium bolteae ATCC
           BAA-613]
          Length = 615

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 101/436 (23%), Positives = 181/436 (41%), Gaps = 12/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A +D LTG+    +F ++   +LD        +  V+  D   +K INDV G 
Sbjct: 184 NEQLNDLASRDTLTGVYLFSAFKEKAQQLLDTRPE----KFAVVYTDFSDFKYINDVFGY 239

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MP 644
             GD +L    + + + L   ++  R+S + F ++L     S   A  A A  + +  M 
Sbjct: 240 DYGDLLLSQYGKLLLKGLHEYELCGRVSADNFVLLLHYNEKSEIAARQADADYEILRFMH 299

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                + +     I         +T   +L  A  A    K     +   +  S     R
Sbjct: 300 TAHDGQMLPTNCGICCIEDVIESLTIDGLLDRANFARKTVKTGNKQNYVYYDESIRSHLR 359

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I+  +  A+EN E  + Y P + L   +I   EAL++W       I    F+ + E
Sbjct: 360 EEKDIENRMLTALENREFTVYYQPKVNLATGKIGCAEALVRWQSQAGAIIPPDRFIPVFE 419

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              MI  ++ ++ E + R + S  D     P+ + +N++     D    +   ++  +  
Sbjct: 420 RKYMIDRLDQYVYEEVCRWLRSLIDS-GRKPLPVSVNVSRLQFYDQNFVDRYVSIRDQYA 478

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  +++ F+ES+   N  R    + RL+K G S ++DDFG   S L  L  +P D +K
Sbjct: 479 IPPELLEVEFTESIAFDNTARLLQTVARLKKAGFSCSIDDFGKGYSSLGLLKNLPIDVLK 538

Query: 883 FNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            + SL           +A++  II M K  +   +A+ I     ++ L ++GCDY+Q   
Sbjct: 539 ID-SLFFDEGPDQNKDMALVEGIIDMVKKFDIRTVAEGIESMDQVEYLKQIGCDYVQGYV 597

Query: 940 VASPLGFNSILKLLKE 955
              P+  +    L+ +
Sbjct: 598 FYRPMPQSDYEALIIQ 613


>gi|297580825|ref|ZP_06942751.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae RC385]
 gi|297535241|gb|EFH74076.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae RC385]
          Length = 791

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISALQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|91794514|ref|YP_564165.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91716516|gb|ABE56442.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 755

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/516 (20%), Positives = 213/516 (41%), Gaps = 23/516 (4%)

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
            +    + ++D       L         +   E  +  +  Q HW  +      +    +
Sbjct: 236 ASVFTLLDVDDHAMLHDTLHIVREGLLRQAWCEVPLLLS-GQRHWFKLSFCHALDDKAQL 294

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L     A DITE+ +  + +  ++  D LTG+PNR  F   L   L      D+    V 
Sbjct: 295 LML---AEDITERYRLADELSFHSNHDVLTGLPNRVQFELLLDEALKDP---DSANACVA 348

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D+++ INDV G   GD++L  + +R+  LL+  D++ARL G+ FGI++ S      
Sbjct: 349 FLDLDQFQVINDVSGHQAGDELLCQVAKRLKLLLRKGDVVARLGGDEFGILMYSATQESA 408

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                    +         + +  V+ S+G A    +      +L   + +   AK  G 
Sbjct: 409 TLVAKRICLQLSEHEFQWRKVKHNVSVSMGLAKLDKNAGDIYTVLSQIDASCRLAKEEGR 468

Query: 690 NHVESFRVSSFRS---DRVMIKE-DLCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQW 744
           N    +     +       M+   D+  A+   E  L Y  I  L   +  + +E L++ 
Sbjct: 469 NQWHFYSKDDPQISKLYNQMLASVDITGALALDEFELFYQLIEPLEKADTGLHMEVLLRM 528

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD----IISWRDQANMPPIFILINI 800
                  +S + F+  AE   +   I+ ++++ + +     + +W+         + IN+
Sbjct: 529 VQKDGSYVSPAIFLPAAERYNLASRIDRWVIDNLLKWGANNLATWQQLT-----MVSINL 583

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++  L D +    ++  +        ++    +E+  +   +++  L+  L+ +G  L L
Sbjct: 584 SALSLGDQKFMSWLEMRLMVEPELVDKLCFEITETAAVSQLDQATALIDLLQPLGCKLAL 643

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S  +YL  +  D VK +G  +      +   AI+ +I  + K++E  +IA+ +
Sbjct: 644 DDFGSGFSSFAYLKCLDVDFVKIDGQFVVNLCQDKSDKAIVAAICQLGKDMEFEVIAEFV 703

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                   L  +G DY Q   +A P   +S+   L+
Sbjct: 704 ESVEVGYLLKNLGVDYAQGYAIAKPQRLSSLTSGLR 739


>gi|304311325|ref|YP_003810923.1| hypothetical protein HDN1F_16880 [gamma proteobacterium HdN1]
 gi|301797058|emb|CBL45271.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 531

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 93/454 (20%), Positives = 195/454 (42%), Gaps = 14/454 (3%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           P   +N  +   + +    +    +          +D+LT + NR+ F  RL+  +  + 
Sbjct: 75  PNRATNTALEFAVALLRRESALNLASRRKIHRQNTRDSLTQLLNRREFYRRLSKTVARTV 134

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           ++  +   ++++D+D +K IN+  G   GD  L  +   I + ++  D +ARL G+ FG+
Sbjct: 135 SNP-VPNALLLVDLDFFKVINETFGSEAGDAFLQEVAGLIKDSVRAQDCVARLGGDEFGL 193

Query: 620 ILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +L    +       A  + + +        +R + +TASI        + +    L  AE
Sbjct: 194 LLRDC-DLETAQRIATHINQRLTQHQFCWDDRFLPLTASIALVVLDCQQGSVEYYLARAE 252

Query: 679 LAMYHAKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLV---YHPIIRLM 731
            A+Y AK  GGN  + +             +M    +  A+EN+   L     +P+    
Sbjct: 253 AAIYTAKEAGGNRCQVYDEHHSLMILHQKGLMWFGRIHAALENNRFILYAQKINPLSSKA 312

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            +E    E LI+        IS  EF+ +AE   ++  I+ +++ R  + + +   + + 
Sbjct: 313 RKEGCHYELLIRMLEDDGSIISPGEFLPVAERYNLMPMIDRWVITRAFQWLAANASKRHA 372

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +   +N++   L D   C  +     +       I    +E++ + N +R+   + ++
Sbjct: 373 IGV-CSVNVSGASLCDESFCNYVLDQFQRYRVRGENICFEITETMAIRNLQRTLDFIAQM 431

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
           ++     +LDDFG+  S   +L  +P D VK +G  +    +     A+++SI  +   +
Sbjct: 432 KQFHCKFSLDDFGSGFSSYGHLRSLPVDYVKIDGQFVRQMADDPVDYAMVKSINELGHLM 491

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
               IA+ +  +  +++L  +G DY+Q   +  P
Sbjct: 492 RRQTIAEFVEDDTTLEKLRSLGVDYVQGYGIEKP 525


>gi|159027238|emb|CAO89333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 604

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/424 (24%), Positives = 213/424 (50%), Gaps = 6/424 (1%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PNR  F + L++ ++ +  ++ L   ++++D+ + + +N+ LG  +GD +L  L  R+ 
Sbjct: 180 LPNRSLFNEHLSSAINNAQKNNQL-IGLLLLDVGQLRNVNNQLGYRLGDKLLKILIERLR 238

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           + L+  DI+A   G  F I+L   N++  +      + K++     +    + V  S+G 
Sbjct: 239 KSLRSEDIVAHWRGYEFIILLSQINDANDLEKVGQRIIKTLESNNEIENHSLVVRLSLGS 298

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718
                       +L+  E  +   K+   ++ +   V+    +     ++  L  A+ N+
Sbjct: 299 VICPPDGTDRKVILQKLEENLVAVKNNINDNSQIESVNVHPKNTRSSKVEYFLYQAMRNN 358

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           EL L Y P + ++  ++ GLEAL+ W HP++G I  + F+ + EE  +I  +N ++L+  
Sbjct: 359 ELALYYQPQVNIIQGQVEGLEALLCWLHPQFGLIPPNRFLPLVEESDLILELNRWVLKNA 418

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            +    W+ Q  +    I IN++   L D +L   ++ ++++T   P  +++  +E+ ++
Sbjct: 419 CQQAQIWQ-QRGLLYTPISINLSPHQLRDPQLLTNLKEVLTETQIGPFFLEVEITETSLL 477

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
            N   +  +LG L+K+GIS+TLDDFG+  + ++YLG  P   +K   SL      T +  
Sbjct: 478 ENSRETGRILGDLQKLGISITLDDFGSGYASIAYLGQFPVKKLKIEQSLTKKLTDTPQDT 537

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             + S++ +AK+     IAK +  +  ++ L  +GC+ +Q + ++SPL    +   L   
Sbjct: 538 RFISSLLAVAKSFNLIAIAKGVETQQQLEILQELGCERMQGNRISSPLAVEEMTTFLHTH 597

Query: 957 FPLV 960
             L 
Sbjct: 598 RTLS 601


>gi|22127703|ref|NP_671126.1| biofilm formation regulator HmsP [Yersinia pestis KIM 10]
 gi|108809815|ref|YP_653731.1| biofilm formation regulator HmsP [Yersinia pestis Antiqua]
 gi|108813806|ref|YP_649573.1| biofilm formation regulator HmsP [Yersinia pestis Nepal516]
 gi|161511314|ref|NP_994647.2| biofilm formation regulator HmsP [Yersinia pestis biovar Microtus
           str. 91001]
 gi|218930991|ref|YP_002348866.1| biofilm formation regulator HmsP [Yersinia pestis CO92]
 gi|229270465|ref|YP_001608349.2| biofilm formation regulator HmsP [Yersinia pestis Angola]
 gi|21960822|gb|AAM87377.1|AE013986_8 hypothetical protein y3832 [Yersinia pestis KIM 10]
 gi|108777454|gb|ABG19973.1| diguanylate cyclase/phosphodiesterase [Yersinia pestis Nepal516]
 gi|108781728|gb|ABG15786.1| diguanylate cyclase/phosphodiesterase [Yersinia pestis Antiqua]
          Length = 728

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 304 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 361

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   D+LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 362 QRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 421

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 422 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 481

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 482 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 541

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 542 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITE 599

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 600 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 659

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 660 PEDD-AIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 718


>gi|294142000|ref|YP_003557978.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293328469|dbj|BAJ03200.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 499

 Score =  361 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 206/422 (48%), Gaps = 15/422 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR     RL      S      + ++++IDI +++ +ND+ G +VGD++L  +
Sbjct: 89  DKLTGLPNRLGVKSRL------SGLSTIEQGSLVLIDIYRFRFVNDLFGFSVGDELLRQV 142

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           ++R+         +AR++ + F I    + +   +      +R+ + +P  +    I+V 
Sbjct: 143 SQRLMGSEPQAAYVARMNEDEFLIYFEVQQSESSLLA----LRERLQVPYEIEGSTISVQ 198

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLA 714
             +GF          S +L+  +LA+  AK         +      +   + I  DL  A
Sbjct: 199 IQMGFVDLNLHHTHVSSLLRRLDLALIKAKSHKPFFASYALGDDLSQQRELSIIHDLPKA 258

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +LY+VY P + +     V +EAL++W H + G+IS  EF+ +AE   MI+ ++ + 
Sbjct: 259 LQQGQLYMVYQPKLDVALGTYVQVEALMRWQHSELGHISPGEFIPLAEYAGMIELLSQWA 318

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++      W+       + + +N++++D++   LC+ +Q  +S+   S   + +  +E
Sbjct: 319 LEQVIAQQARWQTMGIR--LQVAVNLSTQDMISATLCDDIQNKLSRYGVSAGSLSIEITE 376

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M + + +   + +L+++G+ + +DDFGT  S L+YL   P D VK + + +      
Sbjct: 377 SQLMDDMDLAIATIEKLKEVGVDVAIDDFGTGHSSLAYLKNFPVDEVKIDKAFLDDLLTD 436

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + A  I+RS I +A+ +  +   + +  +     L  MG D IQ    A P+    I   
Sbjct: 437 KRAAHIMRSSIELAQGLGFSTTVEGVETQAVNLALIEMGVDKIQGDLFAKPMTAKEIEAE 496

Query: 953 LK 954
           L 
Sbjct: 497 LT 498


>gi|312881911|ref|ZP_07741674.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370429|gb|EFP97918.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 786

 Score =  361 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 214/465 (46%), Gaps = 16/465 (3%)

Query: 503 SNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +++ +I R      D+  E   S +     A  D+LT + NR  F   +  IL+  A +
Sbjct: 307 IDNDSEIGRLSERFYDMYRELNLSYQKTKTMAENDHLTQLANRYQFQTHVEAILEEGAIE 366

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP------DILA-RLSG 614
            +    ++ ID+D +K +ND  G  VGD +LV    +I ++          DILA RLSG
Sbjct: 367 SSAW--ILYIDLDNFKYVNDRYGHQVGDSLLVHFAEQIRKISTEYSELQQCDILASRLSG 424

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I + +      +   A A+ + I    + L     +TASIG AS+ +   T  ++L
Sbjct: 425 DEFAIFVQAARTKFYVDSLAKAILEPIQSSSHTLLSSFPITASIGIASYPNDGKTLEKLL 484

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
            NA+ AMY AK  G N +  +        R    I+  L       E  L+Y P      
Sbjct: 485 SNADTAMYQAKRAGKNQIAQYSKELDDIVRRQNQIETALRNGDLEKEFTLLYQPYYDAKG 544

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            ++ GLEAL++W+ PK G ++ SEF+ I+E++ +   I+ ++++R   +    +      
Sbjct: 545 LKVQGLEALLRWNSPKLGKVTPSEFIPISEQIGLFGTIDRWVIKRAFSEFHQLQSCFKHE 604

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + IN++S +L   +L   +Q+L        + I    +E+    + +    LL +L 
Sbjct: 605 -VKLSINLSSAELDSLQLAHDIQSLARHYSVEVALIDFEITET-FASDSQSFL-LLHKLA 661

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIET 911
            +G +LT+DDFG+  + ++ L   P   +KF+   +          +++ ++ +  +   
Sbjct: 662 HMGFNLTIDDFGSGYTSIAQLVEYPVQKIKFDREFLETLIKTNNQQVVKPLVDLCHSQSM 721

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            + A+ I        L    CDY+Q  +++ PL    ++ L  +R
Sbjct: 722 MVTAEGIESREMHDWLAENKCDYMQGFYLSPPLSLEYLIDLFSQR 766


>gi|229519974|ref|ZP_04409404.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae TM 11079-80]
 gi|229343026|gb|EEO08014.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae TM 11079-80]
          Length = 791

 Score =  361 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|229294895|ref|YP_001403013.2| biofilm formation regulator HmsP [Yersinia pseudotuberculosis IP
           31758]
 gi|229597224|ref|YP_001718860.2| biofilm formation regulator HmsP [Yersinia pseudotuberculosis
           YPIII]
          Length = 728

 Score =  361 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 304 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 361

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   D+LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 362 QRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 421

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 422 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 481

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 482 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 541

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 542 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITE 599

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 600 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 659

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 660 PEDD-AIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 718


>gi|240147559|ref|ZP_04746160.1| putative sensory box sensor/GGDEF/EAL domain protein [Roseburia
           intestinalis L1-82]
 gi|257200244|gb|EEU98528.1| putative sensory box sensor/GGDEF/EAL domain protein [Roseburia
           intestinalis L1-82]
          Length = 658

 Score =  361 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 184/428 (42%), Gaps = 15/428 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTGI N+ +     + +L+      +     + +DI+K++ IN   G++ GD 
Sbjct: 66  YRAEYDILTGIYNKTNMFQATSAMLE---RYPDRHFAFVRMDIEKFQLINSFFGMSAGDM 122

Query: 591 VLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           +L  +   +   ++        R+  + F   +  EN    +  F          P++  
Sbjct: 123 LLKYIADLLICAVRNRSDVTFGRMDADIFCFCVSYENTKELVESFDKMRDILSRYPLDFD 182

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
              I      G       KIT   M   A LA  H K     +   +  ++S        
Sbjct: 183 IVPIF-----GVYLIAGKKITPDHMYDRANLAAKHCKGNYIRNYAFYTRQMSQEIEKEQR 237

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I   +  A+EN E  + Y P   L D +I G EAL++W HP+ G IS  EF+ + E    
Sbjct: 238 IVNSMKSALENHEFVVFYQPKYGLSDNQIAGAEALVRWKHPERGMISPGEFIPVFERNGF 297

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++ E+    +  W D+    P+ I +N++   L + ++   +  L+        
Sbjct: 298 ITKLDYYVWEQTCIQLRKWMDEGKN-PLPISVNLSRVSLYNKDIVNVICNLVDSYRIPRR 356

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++  +ES    NP+  + ++ RLR+ G  + +DDFG+  S L+ L  I  D +K +  
Sbjct: 357 LFQVELTESAYNTNPKAVQDMMQRLREEGFYILMDDFGSGYSSLNVLKDIVVDVLKMDMK 416

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
              G   +     I+ ++I MAK +   ++A+ +     ++ L  +GC+Y+Q  + A P+
Sbjct: 417 FFAGDDREGRGENIMAAVIRMAKWLNMPVVAEGVERIEQVEFLRSIGCEYVQGYYFAKPM 476

Query: 945 GFNSILKL 952
                 KL
Sbjct: 477 PVEEYEKL 484


>gi|254224979|ref|ZP_04918593.1| signal protein domain/GGDEF domain protein [Vibrio cholerae V51]
 gi|125622366|gb|EAZ50686.1| signal protein domain/GGDEF domain protein [Vibrio cholerae V51]
          Length = 791

 Score =  361 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEVSHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|15640722|ref|NP_230352.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121587756|ref|ZP_01677516.1| signal protein domain/GGDEF domain protein [Vibrio cholerae
           2740-80]
 gi|153215117|ref|ZP_01949824.1| signal protein domain/GGDEF domain protein [Vibrio cholerae 1587]
 gi|153818729|ref|ZP_01971396.1| signal protein domain/GGDEF domain protein [Vibrio cholerae NCTC
           8457]
 gi|153822740|ref|ZP_01975407.1| signal protein domain/GGDEF domain protein [Vibrio cholerae B33]
 gi|227080883|ref|YP_002809434.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229505678|ref|ZP_04395188.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae BX 330286]
 gi|229508748|ref|ZP_04398241.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae B33]
 gi|229512408|ref|ZP_04401882.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae TMA 21]
 gi|229519502|ref|ZP_04408945.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae RC9]
 gi|229525353|ref|ZP_04414758.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae bv. albensis VL426]
 gi|229530507|ref|ZP_04419895.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae 12129(1)]
 gi|229608697|ref|YP_002879345.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae MJ-1236]
 gi|254291979|ref|ZP_04962759.1| signal protein domain/GGDEF domain protein [Vibrio cholerae
           AM-19226]
 gi|254851033|ref|ZP_05240383.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae MO10]
 gi|255743840|ref|ZP_05417796.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholera CIRS 101]
 gi|262156059|ref|ZP_06029178.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae INDRE 91/1]
 gi|262170000|ref|ZP_06037690.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae RC27]
 gi|298500815|ref|ZP_07010618.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae MAK 757]
 gi|81545331|sp|Q9KU26|MBAA_VIBCH RecName: Full=Biofilm architecture maintenance protein mbaA; Flags:
           Precursor
 gi|9655144|gb|AAF93868.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547983|gb|EAX58063.1| signal protein domain/GGDEF domain protein [Vibrio cholerae
           2740-80]
 gi|124114908|gb|EAY33728.1| signal protein domain/GGDEF domain protein [Vibrio cholerae 1587]
 gi|126510751|gb|EAZ73345.1| signal protein domain/GGDEF domain protein [Vibrio cholerae NCTC
           8457]
 gi|126519723|gb|EAZ76946.1| signal protein domain/GGDEF domain protein [Vibrio cholerae B33]
 gi|150422118|gb|EDN14085.1| signal protein domain/GGDEF domain protein [Vibrio cholerae
           AM-19226]
 gi|227008771|gb|ACP04983.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae
           M66-2]
 gi|229332280|gb|EEN97768.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae 12129(1)]
 gi|229338934|gb|EEO03951.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae bv. albensis VL426]
 gi|229344191|gb|EEO09166.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae RC9]
 gi|229350558|gb|EEO15504.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae TMA 21]
 gi|229354272|gb|EEO19202.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae B33]
 gi|229357901|gb|EEO22818.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae BX 330286]
 gi|229371352|gb|ACQ61775.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae MJ-1236]
 gi|254846738|gb|EET25152.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae MO10]
 gi|255738471|gb|EET93860.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholera CIRS 101]
 gi|262021734|gb|EEY40445.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae RC27]
 gi|262030095|gb|EEY48740.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio cholerae INDRE 91/1]
 gi|297540596|gb|EFH76654.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae MAK 757]
 gi|327483500|gb|AEA77907.1| C-di-GMP phosphodiesterase MbaA, repressor of biofilm formation
           [Vibrio cholerae LMA3894-4]
          Length = 791

 Score =  361 bits (928), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|90422026|ref|YP_530396.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
 gi|90104040|gb|ABD86077.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           BisB18]
          Length = 574

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 113/541 (20%), Positives = 222/541 (41%), Gaps = 14/541 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +  +   G   + WDI  D +  +P  A I             ++   I          +
Sbjct: 22  ADILAALGHAAFVWDIASDAMAWSPAAAAIFRDLPAEALASGASFANLIEPVRAVRSEAL 81

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           L S  G      + E+ VRA+      W+       +  +G   R  GI     E+    
Sbjct: 82  LGSPGGSHGVAYRIEYGVRASTAAPVCWIEETGCWFAAPDGKPARVEGIVRVNNERHARE 141

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + ++  A  D LTG  NR   +  L   +D ++         M+I ID   ++ND  G  
Sbjct: 142 QQLVKLAQHDPLTGELNRSHLMASLAEAVDEASQ-FRSNFAFMLIGIDHLARVNDAFGFD 200

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           V D V+  + +RI   L+  D+L R SGN+FG+IL +             +       + 
Sbjct: 201 VADQVIGEVAKRIRARLRAGDLLGRFSGNKFGLILKNCTIDDMTVAAERFLAGIRDEVVP 260

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                + VTASIG  S       + E L  A  ++  AK R       +R +  R  +  
Sbjct: 261 TKSGPVAVTASIGGVSAPRYARGADEALNRAHESLDAAKSRRRGSFSLWRPNVERDAQRR 320

Query: 707 I----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +     +++  A+    + + + P+++ +       E L++        + + + + +AE
Sbjct: 321 VNIRVTDEIVTALNERRIVMAFEPVVQAVSRAPAFHECLVRMKQDDGELLLAPDIVPVAE 380

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +L +I+ ++  +LE +  ++ +       P + + +NI+    +D +    +++L+    
Sbjct: 381 KLGLIRLVDHRVLELVVAELAAA------PGVELSLNISPDTTMDADWWASIESLLGANP 434

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+ +  +E+V + + +  R  + RL+  G  + +DDFG   +    L  +  D VK
Sbjct: 435 GVAERLIVEITETVAIQDLDDVRGFVNRLKNFGARIAIDDFGAGYTSFRNLRNLGVDIVK 494

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +G+ +     +    A ++++I +A+ +E   +A+ +  E     L   GCDYIQ   +
Sbjct: 495 IDGAFVQNIARSADDRAFVQTLIDLARRLEIKTVAEWVQDEASAIMLRDWGCDYIQGRLI 554

Query: 941 A 941
            
Sbjct: 555 G 555


>gi|147674861|ref|YP_001216196.1| signal protein domain/GGDEF domain-containing protein [Vibrio
           cholerae O395]
 gi|146316744|gb|ABQ21283.1| signal protein domain/GGDEF domain protein [Vibrio cholerae O395]
 gi|227012528|gb|ACP08738.1| c-di-GMP phosphodiesterase A-related protein [Vibrio cholerae O395]
          Length = 791

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 204/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + NR  F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANRYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|296165027|ref|ZP_06847582.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899675|gb|EFG79126.1| diguanylate cyclase/phosphodiesterase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 757

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 110/448 (24%), Positives = 216/448 (48%), Gaps = 22/448 (4%)

Query: 521 EQKKSLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           E+K+ L   + +A  +D LTG+ N++ F DRL   L       ++  +V+ + +D ++ +
Sbjct: 305 ERKQRLLVAVSDATLRDPLTGLANQRLFDDRLAHAL-RLHVHHSVPVSVLTVGVDDFRLV 363

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VGD +L  +  RI   +     +AR+ G+ F I++            A  + +
Sbjct: 364 NDTLGYDVGDKLLRGVGERIQANVDESHTVARMGGDEFAILVEDR--PGVAIHLANGLAR 421

Query: 640 SIAMPINLLEREITVTASIGFASWTSS---KITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           S   P+++ +  + V  SIG AS  S+     +   ++K A+ A ++A   G  +V+++ 
Sbjct: 422 SFEEPVDIDDHRLDVRVSIGVASADSAIVTAPSPGNLIKQADAARFYAHLAGSTNVQTYT 481

Query: 697 VSS-----------FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                             R+ +  +L  A+++  L L+Y P   +    + G EAL++W 
Sbjct: 482 PEMVVQLGEAPAFDSAMARLQLLGELRRAIDSRSLTLLYQPKFSMWTGSVRGAEALVRWQ 541

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP++G +  ++F+ +  E  ++ A+   +L +      +   Q    PI + +N+A+  L
Sbjct: 542 HPRFGVLEPAQFLPLVREHGLMDALTDLVLSQ--AIADAAAWQDADAPIPVAVNLAAPSL 599

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             + L + + +++++   SPS + +  +E +V+ +  ++R +L RLR  GI + +DDFG+
Sbjct: 600 DQDALPDRIMSVLNRYGMSPSSLTIEITEDLVVADLAKARTVLNRLRDNGIQVAIDDFGS 659

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             + L+YL  +P D +K     +        A  I RS+I +A       +A+ +     
Sbjct: 660 GYATLTYLRELPADEIKLGREFIAPILHDDRAATIARSVIELASTFGIATVAEGVEDRAT 719

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
            + L   GCD +Q +    PL  + I +
Sbjct: 720 AQRLKEYGCDAVQGNFFCRPLPASKIPR 747


>gi|146293894|ref|YP_001184318.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|145565584|gb|ABP76519.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
          Length = 498

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 196/418 (46%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      L T++         R T++++DI +++ +ND+ G   GD +L   
Sbjct: 83  DKLTGLSNRVGLKRTLATMM------PLTRGTMVLVDIYRFRYVNDLFGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P  +ARL+G+ F +         ++      ++    +P  + +  ++V 
Sbjct: 137 AERLHSLSLNPRFIARLNGDEFFLYYDQNLTEEQLLHLRGRLQ----VPFRINDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG     S    +S+ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 VQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQLRELKIIDSLPKG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + LY+VY P   +       +EALI+W H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 253 LQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAEYAGMIDLVSQWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++      WR       + + +N++++DL    L + + + ++     P  + +  +E
Sbjct: 313 LEQVLAQQAKWRTAGIN--LCVAVNLSTRDLDSETLPQEIASRLAYYHLPPESLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+SL +DDFGT  S L+YL ++P + VK + + +      
Sbjct: 371 STLMADLNKAVETLDKIRALGVSLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLQDLERD 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I        L  MG D +Q  + A P+    + 
Sbjct: 431 KASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAKPMSAAELE 488


>gi|312194719|ref|YP_004014780.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311226055|gb|ADP78910.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 761

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 207/438 (47%), Gaps = 8/438 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + L      A  D+LT   NR+   +RL   +  + T  +    +++  +D++K +ND
Sbjct: 317 EVQRLAESKEQAHTDHLTHQLNRRGLDERLRAAIAAADTTGHPLALLLLD-LDRFKLVND 375

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG  VGD +L  ++ RI   L+  D LARL G+ F ++L    + +     A  +R ++
Sbjct: 376 SLGHRVGDQLLAEVSARIATALRPGDTLARLGGDEFAVLLER-TDCVGAQLVADRVRAAL 434

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSF 700
           A    +    + VTASIG A +      + E+L  A++AMY AK    G      R +  
Sbjct: 435 ADVFQVDVLTVAVTASIGTAIYPEQAANADELLARADIAMYTAKRHHTGVEHFDPREALD 494

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 + E L + +   ++   Y P + +    +  +EAL +W HP+ G ++ + F+ +
Sbjct: 495 PLLEFTMTESLRVGIGEHQIEAHYQPKVEIATGRVRSVEALARWRHPERGLLTPASFVPL 554

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   ++ ++   +LER    +  WR+      +   +NI++ DLLD      ++ ++++
Sbjct: 555 AEHAGLMSSLTTAVLERACTQLACWREVGLD--VTAAVNISATDLLDATFPRHVEGVLAR 612

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL-GYIPFD 879
              +   ++L  +E+ +M +  R+  +L +L   G+ + LDD+GT  S L YL G  P D
Sbjct: 613 HGLAADALELELTETTLMLDRSRAAAVLRQLHDQGVGIALDDYGTGYSTLGYLGGDFPVD 672

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++     +    I+ S I +A  +   ++A+ +     +  L   GCD  Q 
Sbjct: 673 VLKLDRSFVSRLECDDVARKIVSSTIDLAHQLGLRVVAEGVETGRALDLLREFGCDLAQG 732

Query: 938 SHVASPLGFNSILKLLKE 955
             +  P     I  LL +
Sbjct: 733 FLIGEPSPAVDITPLLSD 750


>gi|167749605|ref|ZP_02421732.1| hypothetical protein EUBSIR_00563 [Eubacterium siraeum DSM 15702]
 gi|167657459|gb|EDS01589.1| hypothetical protein EUBSIR_00563 [Eubacterium siraeum DSM 15702]
          Length = 766

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 205/453 (45%), Gaps = 20/453 (4%)

Query: 509 ILRYIGIANDITEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           I  YI I   ++ ++  K+ E +   A+ D++TG      F+    ++L      +  R 
Sbjct: 310 ITAYIVIVR-VSFRRLTKANEEVSRIAYTDSITGYGTWDKFVLDAKSLL----RHEYRRY 364

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  DIDK+K IND+ G   G+ +L  +   +   L+  +  +R++ + + I++I  ++
Sbjct: 365 ALVSFDIDKFKAINDMYGHDEGNRILKLIADTVNRNLQDGETFSRINSDNYYILMIYSSD 424

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           S         ++      I     E     S G    T   ++   M   A++A    K+
Sbjct: 425 SDTARRIGSLIQA-----IEYEITEFVPVLSFGIYRITDKSVSIRRMGDLADIAKRTVKY 479

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQ 743
              +    +  S      +   I+ ++  A++  E  + Y P + L  +  + G EAL++
Sbjct: 480 GDDSAYTFYSESMLEKMREEKRIENEMQTALDMHEFSVFYQPKVSLDGKVNLTGAEALVR 539

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       IS  +F+ + E+   I  ++ ++++++ + I  W  ++  P + I +N++  
Sbjct: 540 WI-KDGTVISPGKFIPLFEKNRFIVKLDYYIMDQVCQKIKQW--ESYYPHLLISVNMSRA 596

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L D +  E +  +      S S I++  +ES    + +    +  +L+  G  +++DDF
Sbjct: 597 HLRDPQFVEKLNDICLSHGVSTSSIEIEITESAAYESLDVLTAVFKQLKDYGFHISIDDF 656

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S L+ L  +P D +K + + +  S   + A  IL  +I MA ++    I + I  +
Sbjct: 657 GSGYSSLNMLKDLPADVLKIDRAFLAESNSNKRANDILGYVIRMAGSLGMHTICEGIETD 716

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              K L  +GC+  Q  + A P+  +S  ++L+
Sbjct: 717 EQAKLLGGLGCEMAQGFYFAKPMPSDSFEEILR 749


>gi|148973933|ref|ZP_01811466.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145965630|gb|EDK30878.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 614

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 199/460 (43%), Gaps = 26/460 (5%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ND +EQ   +  +      D+LTG+ NR    D L +I   S        +V ++DI+ 
Sbjct: 166 FNDRSEQ--LVNQLSYEVSHDSLTGLLNRSCLSDTLESITQQSV----TPFSVALLDINS 219

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND  G  +GD VL  +   +   L   ++  R +GN F  I               
Sbjct: 220 FKAINDQHGNYIGDKVLQFVAETLRRTLPENNLTFRTAGNEFAFI----TYHSDPIAICE 275

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I    + ++ +I    SIG A          +++ N  LA+   K     H++ +
Sbjct: 276 QILAKIKQGYSSVDIKIDFEVSIGIARSEGDNKDVEQIIFNTSLALKECKQSPDTHIQCY 335

Query: 696 RVSSFRSDRV--MIKEDLCLAVEN----------SELYLVYHPIIRLMDEEIVGLEALIQ 743
                   +    +   L   +EN          + +Y+V  PI+   ++     E L +
Sbjct: 336 DTHLRFRYQRKAELIAALRSELENPISNNLTQDGNGMYVVAQPIVGQGEKRWEYFEVLTR 395

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W   + G+IS  EF+ +AEE  +I  +   ++E + R      +Q     I + IN ++ 
Sbjct: 396 WKTAQHGDISPVEFIQVAEESGLIVELGERIIELVCR-AKKTLEQGLGYKIKLGINCSAH 454

Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +L D+      +   I +  ++ +   +  +E+V++   + ++  L  LR+ G ++ LDD
Sbjct: 455 ELTDSKRYISYLTRTIEQHHFAANEFVIELTETVLLSPTQETKAALNYLREQGFNIALDD 514

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+Y+   P D +K + + +          +++  I+ +A  ++ +++A+ +  
Sbjct: 515 FGTGYSSLNYIHSYPIDCIKIDATFIRNLLTNSTSESVVWLIVQLAHRLDVSLVAEGVEK 574

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              +++L  MGCD IQ    + P+   +I+  +    PL 
Sbjct: 575 REQLEKLHAMGCDKIQGYFYSPPMRPEAIVSYVTHSEPLA 614


>gi|205372687|ref|ZP_03225498.1| sensory box protein [Bacillus coahuilensis m4-4]
          Length = 460

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 204/406 (50%), Gaps = 9/406 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  +  L  A  D LT +PNR     ++  ++             ++ID+D +K IND  
Sbjct: 31  RIHKSSLKLAQYDQLTELPNRS----KIQELITEKLATSYKYMYFILIDLDNFKWINDTF 86

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G + G++++     RI + +      +R+ GN F +I  +  +  +   +A  ++ S+  
Sbjct: 87  GFSSGNELIRQFVSRIQDEIHEEANFSRMEGNLF-LIAHTAESYEEAEIYAHNIQTSLLT 145

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRS 702
           P  L    I +TASIG +   +    + ++LK+AE A+YH K  G N +  +      + 
Sbjct: 146 PFTLKGNPIILTASIGVSVAPTHGTNTWDLLKHAEQALYHVKESGKNFIALYNADTHNKD 205

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +      A+ N E YL Y P +  M ++I  +EAL++W   K+G +S + F+ IAE
Sbjct: 206 TERQLGLQFREALSNQEFYLCYQPKVDAMTKQITSVEALVRWQSSKFGFVSPATFIPIAE 265

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   I  +  ++L    + +  W + +  P   + +NI++   L N L + + A ++++ 
Sbjct: 266 KNGFIFDLTEWILVEACKQMKKW-ELSGSPIQKVSVNISAHHFLANTLDQMVTAALNESE 324

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S  R++L  +E+ VM N + +   + RL+++G+S+ LDDFGT  S L+YL  +P  T+K
Sbjct: 325 LSGDRLELEITETSVMENLQMATGTINRLQELGVSVALDDFGTGVSSLTYLKTLPIHTLK 384

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            + S +     +++  A++R II +AK  +  ++A+ +     +  
Sbjct: 385 IDKSFIDELAQSDRDAALVRMIIELAKIFKLKVVAEGVESIDQLSY 430


>gi|56459317|ref|YP_154598.1| intracellular signaling protein [Idiomarina loihiensis L2TR]
 gi|56178327|gb|AAV81049.1| Intracellular signaling protein (GAF,GGDEF,EAL domains) [Idiomarina
           loihiensis L2TR]
          Length = 866

 Score =  361 bits (927), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 206/429 (48%), Gaps = 8/429 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ++I  +KK+   +   A  DNLTG+PNR  F +RL   +            V+ +D+D+
Sbjct: 423 VSEIERRKKTESSLFHAAHHDNLTGLPNRILFNERLQQAVAHKRRHPEHHFAVLFVDLDR 482

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG + GD+ L+ +++RIG+ ++  D++ARL G+ F I+L +  +     D A 
Sbjct: 483 FKNINDTLGHSAGDEFLLEVSKRIGDCVRDNDMVARLGGDEFVILLDTITSIDDAKDVAK 542

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            M + ++ P +L  +E    ASIG A       ++  +L++A+ AMY AK  G      F
Sbjct: 543 RMIQQMSEPFHLNGQEHYSGASIGIAECLEETDSAERLLRDADAAMYQAKGMGRGRYVLF 602

Query: 696 RVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S   +  D V  +  L  A    +  + + PI+ L   E+  +EA + W+ P++   S
Sbjct: 603 DDSMHENLVDSVRKETALRHAKVEKDFAVSFQPIVNLTTGEVKAVEAKLVWEDPRYSFKS 662

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             E + +AE   +I  ++ F L   ++ ++   + +      + +N++ + LL       
Sbjct: 663 -EELLPLAERTGLIVKLDRFALRAASQWLV---ENSVSAETMLHLNLSVRHLLKTSHLNE 718

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +++++   P  I L F E+ ++ +  R    L RL + G  L +D+FG+    L +L
Sbjct: 719 LVNIVTESGVKPENIALEFDETDLVRDGRRVLASLRRLSEFGFKLVIDNFGSGSGPLQFL 778

Query: 874 GYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PF  +K +   +   +      A+L+ I+ +   ++  + A  +  E    ++ + G
Sbjct: 779 YNFPFTILKLDHHYIARLSSNNRAQAMLKHIVTLCHELDIAVYADGLETETQKNDVEKQG 838

Query: 932 CDYIQDSHV 940
               Q S +
Sbjct: 839 VMMGQGSFI 847


>gi|225570451|ref|ZP_03779476.1| hypothetical protein CLOHYLEM_06552 [Clostridium hylemonae DSM
           15053]
 gi|225160648|gb|EEG73267.1| hypothetical protein CLOHYLEM_06552 [Clostridium hylemonae DSM
           15053]
          Length = 1135

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 116/574 (20%), Positives = 218/574 (37%), Gaps = 38/574 (6%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDR 461
             E     +  S   ++  ++  ++   +     +L +     +    ++    +H +D 
Sbjct: 8   SEENLQSNIESS---MFIMELGSEKCFWSKGF--LLAMEPPKKNESPEHFFASVLHEDDI 62

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             F                  +R+R     +      +     + G+           TE
Sbjct: 63  GRFMRDYRKIADGTFCSCANSYRMRDMGGCY----QNMSVKLWTAGEEC---------TE 109

Query: 522 QKKSLEGILCNA----FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +K L GI+  A      D +T +PN  SF   L   +            V+++ ID + 
Sbjct: 110 TRKYLAGIIAEADNYGNLDPVTLLPNNYSFRKYLYEEVKK-----KENWAVIMLGIDDFT 164

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IN++   + G+ +L    RRI +LL     L RL G+ FG++L   +     A +    
Sbjct: 165 NINELFSYSTGNLLLQDCARRIQQLLPDNAGLFRLDGDGFGVVLYGCDEEGVKAWYEELK 224

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           +  I    N    +  +T S G   +         + +NA  A+  +K  G N +  +  
Sbjct: 225 KSCITEKFNAKGYKFFLTISGGSCCFPKDGNDFETIYRNASKALQTSKKNGKNCLVVYSE 284

Query: 698 SSFRSDRV--MIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHP--KWGN 751
                DR    +   L  +V       Y+VY PI+   ++ +VG E L++WD P      
Sbjct: 285 ELAEKDRRKATLLSALRESVVLGFKGFYMVYQPIVSAENQTLVGSEVLLRWDSPYFPEEE 344

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           IS  EF+ + EE  ++     ++LE   R    W      P   + IN++S         
Sbjct: 345 ISPVEFIPVLEENGLMLETGRWVLETAIRQCAEWCR--YKPDFQMNINVSSLQFEVPSFK 402

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++++    P+ I L  +ES  + +P         +R  GI + LDDFGT  S L 
Sbjct: 403 YLLMEMLTEYEVKPANITLELTESGKVKDPLVLGRQFDFIRGQGIHIALDDFGTGYSSLE 462

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +  D +K + S +   +      A+L +++ +++N+   +  + I      K +  
Sbjct: 463 ILRLLSADELKIDRSFLERISYDVTDQALLSTLVSLSRNMNMEVCVEGIENSKMEKHVCS 522

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +  D +Q    + PL          +  P+ + T
Sbjct: 523 LNPDLLQGFLYSHPLRAKDFEAKYFDGIPVDRQT 556



 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 116/288 (40%), Gaps = 6/288 (2%)

Query: 406  RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
            R  +     G+   ++D   D+   + +   + G         +   +  +H  D    +
Sbjct: 844  RYEMVAEQLGEYFMEYDFDSDKAVFSDNFNRVFGYQGE---ISLAELMTRVHEEDIPELQ 900

Query: 466  TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +D            E R+      + W  + +          +  +    DI E+KK 
Sbjct: 901  KRIDEA-KGGTRPDSVELRLFIPGKTYRWFSVTMTIPEKFGDKPMTVLAKLTDIDEEKKE 959

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +E +   +  D+ T + N+ +  DR+  +LD +  D++      +IDID +K++ND+ G 
Sbjct: 960  IEQLRLKSQHDSTTALLNKAATEDRIRALLDGAGPDEHYVF--FMIDIDHFKRVNDMYGH 1017

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              GD+VL SL +RI    +  DI+ R+ G+ F + +    +  ++   A  +   +  PI
Sbjct: 1018 FTGDEVLRSLAQRIRGRFRGEDIIGRIGGDEFLVFMSYSGDIQEVISKARLLVDVLHQPI 1077

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             +    +  T S+G + +         + + A+ A+Y  K    +   
Sbjct: 1078 QVDGETVKATVSVGASCYPEDGKDFYNLYRRADSALYRRKSMNRDGFC 1125



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 9/148 (6%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHG 447
           V A+   +Q + S        +  +   ++    D     +T       +LG  +  +  
Sbjct: 569 VYASFRPAQSMSSQE-----MIDSAYAGIFQVGMDEEFSLLTCNEGYRRMLGYTAQEVEK 623

Query: 448 PIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             + + L  +H +D       +   +      +  EFRV   D    W++       +++
Sbjct: 624 KFKNHALGLVHPDDIKYVNEEIRRQL-GESDTVTIEFRVVRKDGTPIWIVGTGNVYHSND 682

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAF 534
           G     + I N+   +++ L     +A 
Sbjct: 683 GSASLVVVIINNDENKRRQLSMEREHAM 710



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 77/259 (29%), Gaps = 36/259 (13%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
                +    +  +  G   L+V++I     +    +      +  +       +     
Sbjct: 667 TPIWIVGTGNVYHSNDGSASLVVVIINNDENKRRQLSMEREHAMSKN------ILNNLPT 720

Query: 417 IV----WDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSF 471
            V    +D D   D    +  +  + G     +     N ++  I+  DR      +   
Sbjct: 721 GVKCVRFDADFTID--YISDSMLGLTGYTREDIRELFDNKYINLIYEEDRAAVTNDILEQ 778

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT---EQKKSLEG 528
           +      +   +R    D ++ W+    +        I R   +  DIT   E+KK  + 
Sbjct: 779 LKVSNV-VTMRYRTPCKDGRYIWLETISKLCEAGEDGIQRAYSMVMDITDNGEEKKDTDR 837

Query: 529 ILCNAFQDNLTGIPNRQSFL-DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            L  A         NR   + ++L         D +    V     D +   N V G   
Sbjct: 838 GLKIA---------NRYEMVAEQLGEYFMEYDFDSDK--AVFS---DNF---NRVFGYQ- 879

Query: 588 GDDVLVSLTRRIGELLKFP 606
           G+  L  L  R+ E     
Sbjct: 880 GEISLAELMTRVHEEDIPE 898


>gi|323494363|ref|ZP_08099475.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
 gi|323311526|gb|EGA64678.1| GGDEF family protein [Vibrio brasiliensis LMG 20546]
          Length = 517

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 100/436 (22%), Positives = 197/436 (45%), Gaps = 19/436 (4%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +E +      DNLTG+ NR    D+L  +        N   T+  IDID +K IND+ G
Sbjct: 76  LVEQLSYEVSHDNLTGLLNRSFLSDKLERL----NELQNDPFTLAYIDIDNFKSINDLYG 131

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD ++  +   I + +K   +  R++G+ F  I +S +          ++ + +   
Sbjct: 132 NYIGDQIIKFVANTIKDTVKDKQLAFRIAGDEFAFITLSGDPFE----LCHSLIEKLEKG 187

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                  I  + SIG A  T   +TS +++ NA LA+   K      ++ +         
Sbjct: 188 YQDPAHNIKFSVSIGLARNTGHNLTSDQIILNASLALKDCKQSRHTSIQCYDTHLSAQYY 247

Query: 705 VM------IKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                   ++++L       SE+Y+V  PI+ L  ++    E L +W     G I   EF
Sbjct: 248 RRALVIDALRQELEKDCLSQSEIYVVAQPIVDLSSDKWDYFEILARWQSKALGAIYPIEF 307

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQA 816
           +  AE+  +I  +   ++E   +      ++     + + IN ++ +L ++    + + +
Sbjct: 308 IEAAEQSGLIVELGERIVELACKAKAEL-EKGLGHNVKLGINCSAHELNNSTRYMQHILS 366

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I K  ++PS   +  +E+V++   E  + +L +LR +G  + LDDFGT  S L+Y+   
Sbjct: 367 TIRKYDFAPSDFTIELTETVLLSQTEEVKEILNKLRLLGFKVALDDFGTGYSSLNYIHSY 426

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + + +      E    ++  I+ +AK +  +++A+ +  +  + +L  MGC  
Sbjct: 427 PIDCIKIDATFIKNMLTNETAERVVWLIVQLAKQLGVSLVAEGVEDQQALDKLNAMGCPL 486

Query: 935 IQDSHVASPLGFNSIL 950
           IQ  + + P     ++
Sbjct: 487 IQGYYFSRPETPEVLI 502


>gi|90020887|ref|YP_526714.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89950487|gb|ABD80502.1| diguanylate cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 777

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 101/456 (22%), Positives = 212/456 (46%), Gaps = 9/456 (1%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G++              +  + I+     D+LTG+ NR   L +L+ +L ++    N
Sbjct: 317 DEFGELADAFNTMQ--HAIAEREKKIVYQLQHDSLTGLENRSQVLPQLSRLLSVAQAS-N 373

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ +D++K+ +IND    A GD+VL  +  R  ++L    ++ R+  + F +++ S
Sbjct: 374 ASLAVLAVDVNKFTQINDTFSSAAGDEVLRQVGTRFQQILPTQSVVIRMGSDEFLLLI-S 432

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                ++      ++++      +    + +  +IG+  +  +  +   +L+ A LA+ H
Sbjct: 433 LGAESEMLSVQEQLQRNFDESFLIEGAPMRIDLNIGYCIYPQAGDSPELLLRRANLALKH 492

Query: 684 AKHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           A+       E  +         + I  +   A+E  +L + Y P +   D+  V  EALI
Sbjct: 493 AQQTDVFIAEYQQGWDEAHLKNLRILGEFNSALEAGQLAVYYQPKVGAKDKAKVCAEALI 552

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G I+    + + E    + A+  ++L R   +++  R+Q     I + +N+++
Sbjct: 553 RWIHPELGFINPETLIQLLENAGQVGALTRWVLSRALTNMVELREQGID--IEVSVNLSA 610

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DLL++EL + + +L+ +   + +++ L  +ES +M + E S   L R  ++G +L++DD
Sbjct: 611 LDLLEDELPDYVASLLQEHNIAAAKLCLEVTESALMRDAEHSLANLHRFNRLGCALSVDD 670

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920
           +GT  S LS L  +P   +K + S +    +      I++S I +  ++  ++ A+ +  
Sbjct: 671 YGTGYSSLSQLKQLPVSELKIDKSFVLQLDQNKDDQFIVQSTIELGHSLGLSVTAEGVEN 730

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           E     L   GCD +Q    + P         +K  
Sbjct: 731 EASGAILRSYGCDTLQGYFYSKPAPLPEFSLWVKNY 766


>gi|295106137|emb|CBL03680.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 752

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 178/439 (40%), Gaps = 6/439 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     I   AF D+LTG+ +   F       L       +     + +DID +K INDV
Sbjct: 310 RAHRREIERMAFYDDLTGLYSAAKFALEGDERLAELGRGGSDGAAAVCVDIDNFKLINDV 369

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD+VL  L   + +      I ARLS + F ++L        +   A       A
Sbjct: 370 DGYERGDEVLRELAAILCDEAGRDGIAARLSADNFLLLLPYARCEEALD--ACRRVAERA 427

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             I    + +++   +  +         +E++  A +A   ++ RG       +      
Sbjct: 428 RGIVGNGKPLSLHIGLCCSEDAPDARDVNELMDRARIAQNESRKRGITPCAYSKPMRDAL 487

Query: 703 DRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            R   ++  +  A+   E + +  P   +    ++G EAL++W  P  G +   EF+ + 
Sbjct: 488 LRRADLERSMEGALAQGEFFHLVQPKYDVAGTCVLGGEALVRWRRPDEGIVGPDEFIPLF 547

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   I  ++ F+ E + RD+ +  D    P + I +N++   L   +       +  + 
Sbjct: 548 EQNGFILRLDEFVFESVCRDLRARLDAGL-PVVPISVNVSRLHLHRPDFLPTYVRIKDEY 606

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                  +L  +ES+V+ +      ++  +R+ G    +DDFG+  S L+ L  +P D +
Sbjct: 607 GIPDGLCELELTESIVIEDLHGVFGIMEGMRRAGFRCAIDDFGSGQSSLNVLKDLPADVL 666

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +  S+       ++R +I MA+ +    + + +     +  L    CD +Q   
Sbjct: 667 KLDREFLLESSLPGTEETVVRFVITMARELRMETVMEGVETPKQLAFLRTTECDMVQGFV 726

Query: 940 VASPLGFNSILKLLKERFP 958
            + P+      +LL+   P
Sbjct: 727 FSRPVPPEEFYRLLETGAP 745


>gi|91791793|ref|YP_561444.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713795|gb|ABE53721.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 648

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 96/433 (22%), Positives = 193/433 (44%), Gaps = 7/433 (1%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   +  D LT +PN  +    L  IL       ++    + ++I     I       +
Sbjct: 213 KLRELSRYDQLTLLPNENACKTYLEQILQQQKPSSHI-LAFITVNISNLASIKINYSHTL 271

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D  L+ L + +        ++ R   N F  IL    +   I+ FA  + ++ +   ++
Sbjct: 272 CDKTLIMLAQALSLYASESAVIYRFQQNEFV-ILKHSADHRGISKFAEKIHQACSQTFHV 330

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRV 705
            + +I +  +IG A       +  E+  N+ LA++            F  +       ++
Sbjct: 331 EDFDIVLQPNIGIAIAPFDGRSMEELRHNSLLAVHAKFDGNKADFNFFDQAMADKERHKL 390

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            + + L  A+ N+EL L + P I L   +I+G EALI+W  P++G +  + F+ +AE+  
Sbjct: 391 QLTKALRNAIINNELVLHFQPQIDLETGQIIGAEALIRWMSPQYGFVPPTVFIPLAEQAG 450

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  +++E   +    W  Q     + + +N++++D     L     +++ +     
Sbjct: 451 VITDITQWVIEHSVKACQQWH-QLGFNKLCVAVNLSAEDFKRGNLVTYTMSILHQANLPA 509

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +ES++M +    +  +  LR  GIS ++DDFGT  S L YL      T+K + 
Sbjct: 510 HFLELELTESMLMDDINNIQKQINELRAFGISFSIDDFGTGYSNLGYLTKFNVSTIKIDR 569

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     +   + I+++II M+K++  T +A+ I        L+++GC+  Q    + P
Sbjct: 570 SFVANICQSSNELQIVKAIIEMSKSLSITNVAEGIEDSETALMLSKLGCEVGQGYLWSQP 629

Query: 944 LGFNSILKLLKER 956
           L    ++ LL  +
Sbjct: 630 LTQQDLIVLLSAK 642


>gi|163782883|ref|ZP_02177879.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882004|gb|EDP75512.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 711

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 184/429 (42%), Gaps = 13/429 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             ++    I   A +D LTG+ N++ F + L   ++ +         V++ID+D +K IN
Sbjct: 286 ALEEYARNIEYYATRDPLTGLYNQRVFWELLEYEIERAQRR-GYSFAVLMIDLDNFKVIN 344

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD  L    + + +  +  DI+AR  G+ F +IL   +    +      + + 
Sbjct: 345 DTYGHDFGDKFLREFAKLMRKTFRREDIVARYGGDEFVVILPYASEEEALRSARRFIEEL 404

Query: 641 IAMPIN-LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
               +     + I  T SIG A +     ++ E+   A+  MY AK  G + V     + 
Sbjct: 405 DNFYVEAPDGKPIKATVSIGIALYPQHGESTQELFLTADNIMYRAKAEGKSRVMLPTDTD 464

Query: 700 FRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                    +    +  A+E   +   + PI+     ++   E L++        +++S 
Sbjct: 465 LTRTAEREGKVGILVLEALEKELVLPAFQPIVDTKTGDVHAYEVLMRIR-EDGKLVNASR 523

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE + +I  ++  +++R    +             +  N++ + L+  +  + +  
Sbjct: 524 FIHVAERMGIIHRLDHLLMDRALEKVKE-----TDFSGRLFFNLSPRSLVLEDFLKDVIE 578

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ K  + P R+    +E   + + +  +     L++ G    +DDFG+  +   YL ++
Sbjct: 579 LVEKHDFDPDRMVFEITERDTVKSIDLLKGFAESLKREGFHFAVDDFGSGFASFLYLKHL 638

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D VK  G  +     ++   A + SII +A+ +E   IA+ +  E   K +  +G +Y
Sbjct: 639 PVDYVKIEGEFVRSILSSKMDRAFVISIIALAETLEIKTIAEFVESEEVFKAMKGVGVNY 698

Query: 935 IQDSHVASP 943
           +Q  +V  P
Sbjct: 699 VQGYYVGKP 707


>gi|297582995|ref|YP_003698775.1| extracellular sensor-containing diguanylate
           cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297141452|gb|ADH98209.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus selenitireducens MLS10]
          Length = 702

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 105/453 (23%), Positives = 194/453 (42%), Gaps = 11/453 (2%)

Query: 502 MSNSNGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           +     ++ +     ND +   ++  E I   A+ D+LTG+PNR    D +   L  +  
Sbjct: 255 VVGRQDEVGQLTSSFNDMVEAMEEKDERIFRYAYYDDLTGLPNRNWLNDYVEKRLGDA-- 312

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++++D+  +K IN + G + GD ++ +L + + E        AR+ GN FG +
Sbjct: 313 --GPDMYLILLDVRNFKVINSLYGHSYGDQMIRTLGKVLKEAEAGEVRPARIGGNEFG-V 369

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            + + +   +  F  + +  +       E    +   IG A          ++ + A +A
Sbjct: 370 WVEQTDGGALRTFIESGKAKLNDVHRKEEEWQPLRFHIGVAQVIGDLTGFEDLYQRASVA 429

Query: 681 MYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M  AK++  +    F         +    K  L  A+   E  L Y     L D  ++GL
Sbjct: 430 MQVAKNQDLDDSVMFTKEMLEAIEEDNRFKNGLEDAMIRGEFELYYQEKRYLSDASVMGL 489

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W+ P +G +S + F+ + ++  M+     ++  +   D          P + + I
Sbjct: 490 EALCRWESPTFGMVSPARFIPMLDQNGMMVPFTEYVTVKALTDYPELARLYG-PDVEVSI 548

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI     L +E    +   + +    P RI L  +E V + +       +  LR  G  +
Sbjct: 549 NIPPNVFLLDEYRSFLMQEVKRRGIRPERIILEITEDVFIADMSVVIAAVDSLRAFGFRI 608

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAK 916
           +LDDFGT  S LSY+  +  D VK + S +      E+   +L+SII +AK++   ++A+
Sbjct: 609 SLDDFGTGYSSLSYISQLQTDEVKVDKSFIDQMEMNERSWNLLKSIIRIAKSMNYQVVAE 668

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     + +L   GCD +Q    + PL    I
Sbjct: 669 GVETAEQVMKLKETGCDIVQGYVYSKPLPLKRI 701


>gi|121726979|ref|ZP_01680175.1| ggdef family protein [Vibrio cholerae V52]
 gi|147672425|ref|YP_001214900.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229526286|ref|ZP_04415690.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|297579784|ref|ZP_06941711.1| GGDEF family protein [Vibrio cholerae RC385]
 gi|121630613|gb|EAX63002.1| ggdef family protein [Vibrio cholerae V52]
 gi|146314808|gb|ABQ19348.1| ggdef family protein [Vibrio cholerae O395]
 gi|227014712|gb|ACP10921.1| GGDEF family protein [Vibrio cholerae O395]
 gi|229336444|gb|EEO01462.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|297535430|gb|EFH74264.1| GGDEF family protein [Vibrio cholerae RC385]
          Length = 611

 Score =  361 bits (926), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 189/435 (43%), Gaps = 19/435 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      DNLTG+ NR    ++LT ++     +D    T+  +DID+++ IND+ G  +
Sbjct: 175 QLRHEISHDNLTGLMNRNDLAEKLTALV----QEDRHHFTLAFLDIDEFRSINDLYGHYL 230

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +   I + +       R++ + F  +        +       +   +A     
Sbjct: 231 GDLVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYID 286

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            +R + ++ SIG A ++  K+ + ++L NA LA+   K      +  +            
Sbjct: 287 QDRRLKISVSIGIAKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRT 346

Query: 707 -----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L   +  +ELY+V  PI++         E L +W+    G ++  EF+  A
Sbjct: 347 QIIEALRSELSKPIHQTELYVVVQPIVKKHQSNWDYFEILTRWNSSTLGVVTPLEFIEAA 406

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISK 820
           E+  +I      +LE          +Q     I + IN ++ +L  +    E +   I  
Sbjct: 407 EQSGLIVEFGERILELAC-IAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKA 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +      +  +E+V++        +L  LR++G  + LDDFGT  S L+Y+   P D 
Sbjct: 466 YGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDC 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +      +   +I+  II +A  ++  ++A+ +  +  + +L +MGC+ IQ  
Sbjct: 526 IKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGY 585

Query: 939 HVASP-LGFNSILKL 952
           + + P L    I + 
Sbjct: 586 YFSRPDLPSVMIERW 600


>gi|220910382|ref|YP_002485693.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Cyanothece sp. PCC 7425]
 gi|219866993|gb|ACL47332.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Cyanothece sp. PCC 7425]
          Length = 820

 Score =  361 bits (926), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 102/463 (22%), Positives = 188/463 (40%), Gaps = 47/463 (10%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               A  D LT +PNR+SF   L      S         + ++D+D++K +ND  G A G
Sbjct: 360 YHWQANHDPLTELPNRRSFEQTLRASFTQSQRTQQEHV-LCLVDLDRFKLVNDTSGHAAG 418

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINL 647
           D++L  ++  +   ++  D++ARL G+ FGII     +       A  ++ S+A      
Sbjct: 419 DELLKQISLLLKTQIRQTDVVARLGGDEFGIIFYHC-SLDAAQRLAQKLQSSLATFRFVW 477

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-- 705
            +R  TV AS+G A  ++     +E++  A+LA Y AK +GGN V   R+ S        
Sbjct: 478 QDRVFTVGASLGLAQISAHVADLAEVMTAADLACYTAKKQGGNRVHIHRIGSQALASQLG 537

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEI---------------------------- 735
                  L  A+EN+   L   PI+ +                                 
Sbjct: 538 EVHWAVQLRQAIENNRFCLYSQPIVPINRCSCQTVSGTLDPTVEPREATPIGATNPAACT 597

Query: 736 ------VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR--DIISWRD 787
                 +  E L+         I  + F+ IAE+  +I  I+ + +  +        +  
Sbjct: 598 SQSQPYLCQEVLLHLYDETNQVIDPNVFLPIAEQYGLITVIDRWAIHNLFAYIQAQHYPA 657

Query: 788 QANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                       IN++ + L D    + +   ++     P+ I    +E+  + N + + 
Sbjct: 658 ATLDSARGYRYAINLSGRTLDDASFADFLLEQLAAYQVPPAAICFEITETAAIANLKLAM 717

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
             +  L+  G    LDDFG   S  +YL  +P D +K +G+L+   +       I+++I 
Sbjct: 718 PFIQTLKAAGCLFALDDFGGGMSSFAYLKNLPVDYLKIDGTLIKDLSNNPVNYYIVQAIN 777

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +A  +    IA+ +     +  ++++G D+ Q  ++A P+  
Sbjct: 778 DIAHTMGIQTIAEGVDSLDTLSSVSQIGIDFAQGHYIAQPVPL 820


>gi|146337692|ref|YP_001202740.1| putative diguanylate cyclase/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
 gi|146190498|emb|CAL74497.1| putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
           [Bradyrhizobium sp. ORS278]
          Length = 571

 Score =  361 bits (926), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 221/551 (40%), Gaps = 16/551 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + S+  + S+ +   G   + WD+  D +  +  +  +              +   I  +
Sbjct: 8   LTSELPQTSMILASLGQAAFVWDLASDVIVWSDHVGAVFADVPLPQLCNGGEFAKLIEPD 67

Query: 460 D--RDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-FHWMIIRIRPMSNSNGDILRYIGIA 516
              R           G      + E+ VR        W+       + S+G   R  GI 
Sbjct: 68  RGIRSEVMRQAVPLHGAAGTPYRIEYGVRTRAGAPLIWVEETGCWYAGSDGRPSRAQGIV 127

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
               E+    E ++  +  D LTG  NR + L  L  +++ S          M++ ID  
Sbjct: 128 RINNERHAREEQLVKLSRHDPLTGELNRTNLLATLAEVIEESQR-FRFACAFMLVGIDHL 186

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            +IND  G  V D V++ + +RI   L+  D L R SGN+FG+IL S             
Sbjct: 187 ARINDAFGFDVADGVVLEVAQRIRARLRGGDALGRFSGNKFGLILKSCTMDDMTIAAERF 246

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG----GNHV 692
           +       +      + VTA+IG  S      +  E +  A   +  AK R         
Sbjct: 247 LAAVRDDVVPTKSGPVAVTATIGAVSVPRHARSVEEAVNRAHETLDSAKRRRIGSFSTWR 306

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            +    + R   + + +++  A+    +   + P++          E L++        +
Sbjct: 307 PNVERDAQRKVNIRVTDEIVTALNERRIVTAFEPVVNAQTRTTAFYECLVRMRQDDGRAL 366

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            + + + +AE L +I+ ++  +LE +  ++ +       P + + +NI+ +  +D +   
Sbjct: 367 LAPDVVPVAERLGLIRLVDHRILELVVAELAA------SPNVTLSLNISPETTMDPDWWA 420

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +++++        R+ +  +E+V + + +  R  + RL+ +G  + +DDFG   +    
Sbjct: 421 SIESMMRAHPGVAERLIVEITETVEIQDIDDLRGFVTRLKDLGSRIAIDDFGAGHTSFRN 480

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D VK +G+ +     +    A +++++ +A+ ++   +A+ +  +  +  L   
Sbjct: 481 LRKLGVDIVKIDGAFVQNLVRSADDRAFVQTLVELARRLQIKTVAEWVQDDASVALLRDW 540

Query: 931 GCDYIQDSHVA 941
           GCDYIQ   + 
Sbjct: 541 GCDYIQGRVIG 551


>gi|34556560|ref|NP_906375.1| GGDEF family protein [Wolinella succinogenes DSM 1740]
 gi|34482274|emb|CAE09275.1| GGDEF FAMILY PROTEIN [Wolinella succinogenes]
          Length = 698

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 212/558 (37%), Gaps = 67/558 (12%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR---DNFRTILDSFVGYRRGRLQ 480
               +     + TI G +   + G   + L  I  + +   +     LDS     +    
Sbjct: 164 DNGIIYANKALETITGYSKSELIG--GSLLDIIQSDSKRLSERINLSLDSACNLEKYS-- 219

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC--------- 531
            E R++    +  ++ +    +    G +   I    D+T++K   E +           
Sbjct: 220 -EIRIKTKTGKIRYIDLIANSVEFKEGYV--CIANMIDVTDKKWFKEELEHSRAKLEELN 276

Query: 532 -------------------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                                + D LT +PNR+  L+ L              P +++++
Sbjct: 277 RELKYNMQVIQQKNRLLEDQLYTDKLTSLPNRRKLLEDLKHA---------PSPFLILLN 327

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIA 631
           ID +K++ND  G  +GD VL  + +R+G  +      L +L  + + ++ +  +    + 
Sbjct: 328 IDSFKEVNDFYGTEIGDFVLKEIAKRLGLFVHQGRFRLYKLQADEYALLDMECSRDEDLE 387

Query: 632 DFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                +   + +  I L E+EI +  S G A   +       ++  A++A+  AK     
Sbjct: 388 GVGQKVHDDVDSHLIFLKEQEIHIQISAGMAFGEN-----ETVMTRADIALKLAKKHNKP 442

Query: 691 ---HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              + ++  V     +       L  A++++ +   + P+     +E+   E L +    
Sbjct: 443 FLIYNDTMMVMKEYEENFRWIRMLKNALDDNRIICYFQPVFNNKTKEVYKYECLARLLGE 502

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
                S   F+ I+++  +   I   ++    R                 IN++  D+LD
Sbjct: 503 DGKVYSPFFFIEISKKARLYHRITQAIVSDACRVFKE-------VNCKFSINLSIDDILD 555

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +     +   + +   +   I     ES  + N E     + R+RK+G  + +DDFG+  
Sbjct: 556 HHTINFIIEELERHGVAHKAI-FEILESEGIDNYEEVDAFIQRVRKLGCQIAIDDFGSGY 614

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S  +++  +  D +K + S++  S   +    I ++I+  ++ +    +A+ ++ +  ++
Sbjct: 615 SNFAHILRLNVDIIKIDASIIQNSDTDKNSQIIAKTIVEFSRKLGIKTVAEFVHSKEILE 674

Query: 926 ELTRMGCDYIQDSHVASP 943
            +   G DY Q   +  P
Sbjct: 675 TVKSFGVDYSQGYFIGEP 692


>gi|239626957|ref|ZP_04669988.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517103|gb|EEQ56969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 752

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 196/448 (43%), Gaps = 17/448 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  K+  E +   A++D+LTG  NR  F+  L  +L  +A        +++++I  +K +
Sbjct: 311 TLLKREHESLRLFAYKDSLTGADNRNRFVSELPVLLKETADR-----AIVLMNISGFKFV 365

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N+  G   G+  L+ + + +   ++  +   R + +RFG+++       ++ D    ++K
Sbjct: 366 NEFFGFEKGNLFLLHIAKVLRADIREGERYYRDNADRFGMLVYY-QGREELTDRIKKIQK 424

Query: 640 SIAMPINLLEREITVTASIGFASW------TSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            I        ++  +  + G               +   ++  A LA+        N + 
Sbjct: 425 GINEYTISPNQDYRINCNFGVYIIQAPDPDRQDPASPDTVINGALLALNSVNGNTTNPIA 484

Query: 694 SFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  +     R  I+    +  A+ N E ++   P   L D  +   EAL++W       
Sbjct: 485 FYDGAMHEKARRKIEIASQMQAALANGEFHMYLQPKYYLEDGSLHSAEALVRWCSNGEII 544

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
               EF+ I EE   I  ++++MLE   R +  W  Q       I +N +     D E  
Sbjct: 545 HYPDEFIPIFEENGFITELDMYMLEEACRRVSHWMKQGYKVR-PISVNQSRIFFYDEEYL 603

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           +  + ++ +    P  I L  +ESV M N  + ++++ +L  +G S+++DDFG+  S L+
Sbjct: 604 DKFRQIVDQYSIDPDMIILEVTESVAMSNLAQVKMVISKLHDMGFSISMDDFGSGYSSLN 663

Query: 872 YLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +    +K +   ++   ++ +   ++ SII +AK +  T +A+ I  E+ ++ L  
Sbjct: 664 TLKDLDIAELKLDKEFLSEQSTSSRGQVVIESIIHLAKALSITTVAEGIENEVQLEFLQS 723

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKERF 957
           + CD  Q  + A P+  +   + +  R 
Sbjct: 724 VSCDIGQGYYFAKPMPVDEFERTVLRRM 751


>gi|254505966|ref|ZP_05118111.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219551189|gb|EED28169.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 608

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 100/492 (20%), Positives = 207/492 (42%), Gaps = 47/492 (9%)

Query: 499 IRPMSNSNGDILRYIGI-----ANDITEQ-----------------KKSLEGILCNAF-- 534
             P+ +  G++L  +        +D+ E                  K             
Sbjct: 112 GVPLRSETGEVLGVLLSSFTRELHDVEEMIYHHKLFAHVVVHSLRAKWLSARSDSLVNQL 171

Query: 535 -----QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
                 DNLTG+ NR    D+L  + ++         T+  IDID +K IND+ G  +GD
Sbjct: 172 SFEVSHDNLTGLLNRSFLADKLERLTEI----GTTPFTLAYIDIDNFKSINDLYGNYIGD 227

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            ++  + + I E +    +  R++G+ F  I +S +           +   +        
Sbjct: 228 QIIKFVAKTIEETVHDKQLAFRIAGDEFAFISLSGDPFE----VCNRIIDRLEQGYQDPA 283

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--- 706
             I V  SIG A +++  + + +++ NA LA+   K      ++ +              
Sbjct: 284 HTIRVKVSIGLARYSAHSLNADQIMLNASLALKEGKQSRHLSIQCYDTHLSSQYYRRAMI 343

Query: 707 ---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              ++ +L      +E+Y+V  PI+    E+    E L +W+    G IS  EF+  AE+
Sbjct: 344 IDALRNELDPTTRENEIYVVTQPIVSRHSEQWNYFEVLARWNSQALGAISPLEFIEAAEQ 403

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQALISKTL 822
             +I  +   ++E          ++     + + +N ++ ++ +     E +   I    
Sbjct: 404 SGLIIELGERIVELACA-AKQKLEKGLGHKVKLALNCSAYEITNAKRYLEHLLETIEHYG 462

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           + P    +  +E+V++   +  +++L +LR +G ++ LDDFGT  S L+Y+   P D +K
Sbjct: 463 FKPEEFTIELTETVLLSRTKEVKIILDKLRLLGFTVALDDFGTGYSSLNYIHSYPIDCIK 522

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +      E   +++  II +A  ++ +++A+ +  +  + +L  MGC+ IQ  + 
Sbjct: 523 IDATFIRNMLTNETSESVVWLIIQLANRLQVSLVAEGVEDQQALDKLYAMGCEQIQGYYF 582

Query: 941 ASPLGFNSILKL 952
           A P     I+++
Sbjct: 583 ARPALPEEIIEM 594


>gi|316933558|ref|YP_004108540.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
 gi|315601272|gb|ADU43807.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           DX-1]
          Length = 656

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 194/431 (45%), Gaps = 11/431 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR  F D        +A         ++ D+D +K IND  G   GD
Sbjct: 222 EQIARADPLTGLANRSHFRDA-----AAAACRSGQGVAFVLFDVDNFKTINDTRGHDAGD 276

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            V+ ++   +       D+  RL G+ F ++L  E+ + +    A  +  ++  P+ +  
Sbjct: 277 RVIAAVAELLRSSCGPHDLPVRLGGDEFIVVLQGEDVAARALALARRLSGALTRPLRVAG 336

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
           + + ++ SIG A+ +   I   ++   A+ A+Y AK  G   +  F         +   I
Sbjct: 337 QPLAISCSIGIAAHSGGPIDVEDVFSRADAALYRAKDDGRACIRLFDGRMQEEFLLQRCI 396

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             DL  A+   EL+L + P + L   ++VG EAL++W HP  G I   + +  A  L + 
Sbjct: 397 DGDLPGALARGELHLEFQPQVVLATGQVVGFEALLRWRHPTAGLIPPPDIIHAAIRLQLS 456

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+ +     + +  D +  PP+ + IN++ ++L  +   + +  L  +    P R
Sbjct: 457 ARLLSFIGDASCEFLRAL-DSSGAPPLTVAINVSPRELTLHSPSKILIDLTQRHGIDPRR 515

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I++  +E  +  +P++    L R+   G  L +DDFG   S +S L  I  DT+K + S 
Sbjct: 516 IEIEITEEALF-DPKQCARELQRIEHYGFGLAIDDFGVGHSSISNLMSIALDTIKIDRSF 574

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G +       ++ +I  +A+ +   IIA+ +  + + + L  +GC Y Q      P+ 
Sbjct: 575 VHGVSANVQNQQLIAAITAVARPLGHRIIAEGVESQGEAETLRMLGCSYGQGWLYGRPMR 634

Query: 946 FNSILKLLKER 956
               +  L  R
Sbjct: 635 AADAVAWLAGR 645


>gi|327395329|dbj|BAK12751.1| diguanylate cyclase/phosphodiesterase YciR [Pantoea ananatis
           AJ13355]
          Length = 724

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 125/632 (19%), Positives = 249/632 (39%), Gaps = 32/632 (5%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            ++GY          ++         + +T       +       L  +  L+   +  H
Sbjct: 110 LVQGYPFIRFYAGVPLITPDGHRIGTLCLTDNHPRPAMSTTDRQNLTDLAALVMDRMEVH 169

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +     +       +R     + S D +   D+ R      P    + G  +  M G  
Sbjct: 170 RMEVLRHA-----SQQRLEAISITSPDAIICTDLNRGITFWNPAATKMFGYDAEEMAGK- 223

Query: 450 RNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             ++  +       D  N    L+            +   +  + +     +        
Sbjct: 224 --YVAGLIPERCQTDYRNELERLEHEEAAISAPRTLQIWGKRCNGEEFPAEVSFSGWREG 281

Query: 506 NGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              I RYIG I  D+T + +S   +   A  D LT + +R +F+ +L+ +     T+  +
Sbjct: 282 ---IERYIGMIIRDVTLRYESEARLCELASLDMLTRLASRSAFMTQLSKL-----TESGV 333

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             T+++ D+D +K +ND  G A GD +L  +  +I  +       ARL G+ F ++L   
Sbjct: 334 PYTLLMTDLDSFKDVNDTRGHAAGDALLCHVAEQIRAVCTQAIAAARLGGDEFIVLLPCG 393

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++       A  +  +I  P + ++  I V AS G AS+      +S ++  A+LA+Y A
Sbjct: 394 SDE--AMKIAQQLTAAIQTPFHYMDSTIAVGASTGVASFPHHAADTSSVMSAADLALYRA 451

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F+     ++  R   + +L  AV   +  L Y P     + E++G EAL+
Sbjct: 452 KASGKGQSVLFKSEFREAELGRRRFERELEAAVRQQQFVLHYQPRFDAQNGELIGCEALV 511

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +  ++F+ +  +  +   +  ++++     +  WR Q     + + IN+  
Sbjct: 512 RWMHPARGLLFPADFIDMLIKSPLSITLGTWIVQSAVSQVKQWRAQ--NLSLRVSINLFP 569

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L++  L E ++          S I L   E ++    +    +L  ++  G  L +D 
Sbjct: 570 RQLMEAGLEEVIRQC---AGDDASFIDLEVDEPLLTNTVDIKSQVLEAIQATGALLIVDH 626

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYG 920
           FG   + +S L +     +K + SL     +      ++ +I  +AKN+  T+ A+ I  
Sbjct: 627 FGRSLASMSLLQHRCVAGLKIDKSLTLQLEKSNKTRLLINAIASLAKNMGITVAAEGIEN 686

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +     +    CD +Q +   SP+      +L
Sbjct: 687 DAQHALICAAECDVLQGNQTGSPVSAPRFEQL 718


>gi|295106114|emb|CBL03657.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 573

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 187/431 (43%), Gaps = 16/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +L  A  D LTG+ NR +F  +   +L       +    V+  DI+++K IN++ 
Sbjct: 136 RRAQELLHVAEHDRLTGLYNRTAFCRKTAELLA---AHPDEEFAVIQFDIERFKIINELY 192

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD+VL+++ R +GE L    +  R+ G+RF + L  +              +++  
Sbjct: 193 GSAKGDEVLLAIARTLGEWLHVAGVYGRMEGDRFALCLPHD------VALEGDYVRALEE 246

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +   E +  V    G        +    M   A LA++  K     H   +     ++ 
Sbjct: 247 AVAATEVDRQVVLYFGVYEIEDRTMPVDIMCDRANLALHSVKGDYNTHFALYDSDMHQTF 306

Query: 704 --RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +  +   A+          P+  L    +V  EAL++W  P+ G +   +F+   
Sbjct: 307 LANHELVGEGERALREGRFEPFVQPVFDLATGALVSGEALVRWRDPQKGLVPPGQFLPFF 366

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  ++  + E + + ++   +Q +  P  + +N++  +  D   C+ +  L+S+ 
Sbjct: 367 ENSGFIIRLDGHIREAVCQLLVQMSEQRSSCP-PVSVNVSRLEFYDPRFCQNLIDLVSRY 425

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS ++L  +ES    N  +    + +L+  G ++ +DDFG   S LS L  +P D +
Sbjct: 426 NVPPSLLRLEITESAYADNLPQLLEAVAQLQSHGFTVLMDDFGAGYSSLSMLRDVPVDMI 485

Query: 882 KFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           K +   +             IL++I+PMAK++   IIA+ +        L  +GCDY+Q 
Sbjct: 486 KLDMRFLGDGGAGAQEREKGILKAIVPMAKSLGLPIIAEGVETADQAAFLKSIGCDYVQG 545

Query: 938 SHVASPLGFNS 948
              A P+  + 
Sbjct: 546 FLYARPMPRDE 556


>gi|114049491|ref|YP_740041.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
 gi|113890933|gb|ABI44984.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. MR-7]
          Length = 816

 Score =  360 bits (925), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 126/681 (18%), Positives = 284/681 (41%), Gaps = 30/681 (4%)

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           + Y            LA +V   +  +    M+ +    LL+  +  +  + +     + 
Sbjct: 147 AQYPGATELVYLESDLAPLVARASTELQQRFMRVWGLGALLLIGFTFVLYYLLIRPFKML 206

Query: 360 KRLDNDIIQPALVGGLVL---IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +    +  P     +      V+ +  ++ Q         + +    +R   AV GS +
Sbjct: 207 SQSAKHVGTPEFSTQVPWSASEVLSLQTSLQQVHERLARAVKQLNDSEQRWLFAVEGSRN 266

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +WDWDI    V  +     ++G     + G  + W   +H +DR      L  +V  + 
Sbjct: 267 GIWDWDIRTGEVFLSDRWKEMIGYQPDELEGAFQTWESRLHPDDRQTVLDCLQEYVSGKT 326

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              +   R+   D    W+  R   +  +  G   R IGI  D++E +++   I     Q
Sbjct: 327 KEFESVHRLLHRDGHNVWVFDRGMLVDWDHLGRPTRMIGIHVDVSESERNHAAIAELVKQ 386

Query: 536 DNLTG---IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            + TG   +P  ++F+ +L+  +   ++  +    +++++++ +   N +    + + +L
Sbjct: 387 -SETGHRMLP--EAFMLQLSQYISQRSSTGHWD-ALLLLNVETHGVSNTLTSHEL-ERLL 441

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPINL 647
             L+ R+        +++ +  ++F I++            +    A  +R   + P + 
Sbjct: 442 SQLSARLSSYFAENIVVSHIELDQFAILIKELAADAKMAGRRALALATELRHIASRPFHH 501

Query: 648 LEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDR 704
            ++ +  + +IG     S   I     L+ AELAM HA      G       +   +   
Sbjct: 502 ADQCVNFSTNIGICLLDSIETIAPEIALRRAELAMQHAHSLEEAGCAFYHPDLEHIQDPE 561

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + + + L  A+ +++L L++ P++ +   +IV  E L +W       I  ++F+ +AE  
Sbjct: 562 LSLCQQLKRAITDNQLSLMFQPVVDMQ-GKIVAAEVLSRWHLANGDIIPVAKFIGLAERH 620

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I +++L +  R+ + I  ++ Q    P  + +NI++      +  E + AL  +    
Sbjct: 621 GLIASLDLNVATRVCQLIKQFKQQGISLP-RLTLNISTFSFCQADFVEQLVALTRRYELD 679

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +++ +  +ES ++ +    +  +  L + G+++TLD+FG     LS L + P + VK +
Sbjct: 680 DNQLGIELTESALLTSASFIQPRISLLAEAGVAITLDNFGAGQGALSCLRHYPLNEVKLD 739

Query: 885 GSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                  T       A+++S+    +     I+AK +      +  +R+GC + Q  ++A
Sbjct: 740 LHCAANLTTDTSWSQALIQSV----QAFNLFIVAKGVESPQQQQLFSRLGCTHFQGYNIA 795

Query: 942 SPLGFNSILKLLKERFPLVKN 962
             L  N   +L+  R PL+++
Sbjct: 796 RALSVNDFKQLVCPR-PLLRS 815


>gi|309776593|ref|ZP_07671573.1| putative developmental regulator MorA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915694|gb|EFP61454.1| putative developmental regulator MorA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 625

 Score =  360 bits (925), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 191/439 (43%), Gaps = 11/439 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +KK  + I   AF D LTG+   + FL     +L            V+ +DI  +K +ND
Sbjct: 191 RKKHQKEIEKLAFYDELTGLYRYEKFLLDGQLLLKDKER----MVAVLYLDIMGFKLLND 246

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD VL+ +   +  + +   I  R+SG+ F +++    +  ++      + +  
Sbjct: 247 MEGYGYGDQVLLFVADILRSVAQEEAISCRISGDDFILLIPY-KSRARVIALCKKILELT 305

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A  I+    EI +   +       +  T S ++  A +A            + +     +
Sbjct: 306 ANGIDHA-HEIHLRIGVCLQEDADTDSTISTLVDRARMAQTSIHDDSATAWQFYNQEMRQ 364

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +++ +  A+++ E   V  P   L    I+G EAL++W     G  S +EF+ 
Sbjct: 365 LLLRDAEMEQHMEQALKDGEFLHVIQPKYSLDGSRILGGEALLRWQRSGSGYTSPAEFIP 424

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+   I+ ++ F+   + + I   R       + I +N++   L   +  +   A+ +
Sbjct: 425 LFEKNGFIRKLDAFVFASVCQTIQE-RISQKKCIVPISVNVSRIHLYQEDFADSYIAIKN 483

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +       I+L  +ES+++ N +    +L +LR+ G   ++DDFG+  S L+ L  +P D
Sbjct: 484 RYHIPDGIIELELTESILLKNTKEIFNILEKLRQNGFCCSIDDFGSGYSSLNALKDLPVD 543

Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +      S+  E+   IL+S+I MAK ++  ++A+ I     +  L   GCD +Q 
Sbjct: 544 VVKLDRVFFDQSSHVERNKTILKSMITMAKQLDMKVVAEGIEYTQQLDMLKDTGCDMVQG 603

Query: 938 SHVASPLGFNSILKLLKER 956
              A P       + L+  
Sbjct: 604 FIYAKPCSVEDFYQRLESE 622


>gi|309777731|ref|ZP_07672680.1| putative sensory box protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914497|gb|EFP60288.1| putative sensory box protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 696

 Score =  360 bits (925), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 206/482 (42%), Gaps = 20/482 (4%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI-------LCNAFQDNLTGIP 542
               +  +  + +   NGD + Y+ I  DITE  +  E +          A+ D +T   
Sbjct: 219 GGKRFFNVNAQCVDWINGDPV-YLLIYTDITELTRQKEQLEEYNHSLHKLAYSDEVTKGF 277

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR+ F       +  + +D      ++ +++ K+K +ND+ G+ +GD  L  +  +I + 
Sbjct: 278 NRRKFDMVAQESIRQAESD---TYQMIWMNMQKFKLVNDIGGVDLGDRTLEYVHDKITKH 334

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L   +  AR+  + F  IL+  N   +       M   I         +  +T S G  +
Sbjct: 335 LNRDEYAARMFADNFV-ILMKCNTKEETEQRLKHMVADINSFNTEASHKYYLTFSAGIYT 393

Query: 663 WTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENS 718
                +    M   A  A+   H+K+        +         +   ++  +  A+++ 
Sbjct: 394 VHEPCLPIIYMEDRAHAAIKAKHSKNTDLCVCSYYSDEIRDRMFIEKNMENRMREALKHE 453

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E  +   P + +  ++I G EALI+W+ P +G I  ++F+ + E    I  ++L++ E+ 
Sbjct: 454 EFEVYLQPKVSVQTKKIAGAEALIRWNDPHYGLIPPNDFIPLFETNGFILQLDLYVFEKA 513

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  W  +    P+ I +N++       +       L  +       +++  +E++V 
Sbjct: 514 CSLLSKWLKE-GKTPLPISVNMSRVHFQSMDFLTPYIRLREQYAVPFEYLEIELTETMVF 572

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL---MTGSTEKR 895
            +P+    ++ ++   G   ++DDFG   S L+ L  +  D +K + +    ++ + EK 
Sbjct: 573 EDPDTFTRIIKKIHDAGFRCSMDDFGCGYSTLNSLKDLDVDAIKLDKAFFSSLSMANEKE 632

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I+RS++ MAK ++ T +A+ I     ++ L    CD IQ    + P+  +   KLL  
Sbjct: 633 NIIIRSVLRMAKELDMTTVAEGIETVPQVEFLKHTTCDLIQGYVYSKPVPVHEFEKLLDG 692

Query: 956 RF 957
           + 
Sbjct: 693 QL 694



 Score = 48.0 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIH---INDRDNFRTILDSFVGYRRGRLQYEFR 484
           V        + G          +N     +     D +    I+   +   + R +   R
Sbjct: 37  VAANNRYYDMFGYEKAEYEQKFQNRPDLYYKDDPGDWEALNEIVVKTLQEGKNRYECICR 96

Query: 485 VRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSL 526
           +R    +  W+ +    +    NG  + Y  +  DIT+  ++ 
Sbjct: 97  MRHKSGRRLWIKLIGTFIDEYINGYQISY-SVMMDITDLMQAK 138


>gi|120598035|ref|YP_962609.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|120558128|gb|ABM24055.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
          Length = 498

 Score =  360 bits (925), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 196/418 (46%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      L T++         R T++++DI +++ +ND+ G   GD +L   
Sbjct: 83  DKLTGLSNRVGLKRTLATMM------PLTRGTMVLVDIYRFRYVNDLFGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P  +ARL+G+ F +         ++      ++    +P  + +  ++V 
Sbjct: 137 AERLYSLSLNPRFIARLNGDEFFLYYDQNLTEEQLLHLRGRLQ----VPFRINDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG     S    +S+ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 VQIGCLQLQSHHADASQMLRRLDLALKKARITRSAIACYSENDDIRQLRELKIIDSLPKG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + LY+VY P   +       +EALI+W H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 253 LQQNHLYMVYQPKQNIQTGLCTQVEALIRWQHEELGTISPGEFIPLAEYAGMIDLVSQWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++      WR       + + +N++++DL    L + + + ++     P  + +  +E
Sbjct: 313 LEQVLAQQAKWRTAGIN--LCVAVNLSTRDLDSETLPQEIASRLAYYHLPPESLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R +G+SL +DDFGT  S L+YL ++P + VK + + +      
Sbjct: 371 STLMADLNKAVETLDKIRALGVSLAIDDFGTGHSSLAYLKHLPVNEVKIDKAFLQDLERD 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + I        L  MG D +Q  + A P+    + 
Sbjct: 431 KASEYILEASINIAKKLGYQVTVEGIETLEIRDRLVAMGVDTLQGLYYAKPMSAAELE 488


>gi|94312611|ref|YP_585820.1| diguanylate cyclase/phosphodiesterase [Cupriavidus metallidurans
           CH34]
 gi|93356463|gb|ABF10551.1| diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains)
           [Cupriavidus metallidurans CH34]
          Length = 660

 Score =  360 bits (925), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 102/426 (23%), Positives = 200/426 (46%), Gaps = 6/426 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +P+R +F   L   +  +   +     V++I I  Y+++++V  +   D +       
Sbjct: 236 TDLPDRTAFARWLDQSIAHARLAETG-CAVLLIHIADYREVDEVFEVRADDILAQDAGAL 294

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
               L+  D LARL+ + F + + +  +  +  D    +  S+A  +     ++ +  +I
Sbjct: 295 AQAALEPHDFLARLARDEFAVGVPNLVHHSRAHDLGSRVLGSLAEFVAARGLQMQIGVNI 354

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716
           G A +     TS  +++ A +++  A+  G N V  F  +         +I+ DL  A++
Sbjct: 355 GIAIYPRDAATSEGLMQAARVSLSEARESGSNQVRVFNSAAGERARRTRVIRRDLWPAIQ 414

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +  L L++ P   +   ++VG EAL +W HP  G +S  EF+++AE+   I  ++ +++ 
Sbjct: 415 DDGLSLMFQPKFDVKTRQVVGAEALCRWRHPTLGAVSPVEFIMVAEQSGQIDKLDDWVIS 474

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           R+   + SW+D    P + + IN++            +   I +    PS I L  +E+ 
Sbjct: 475 RVCGQVRSWQDAGL-PVVPVAINVSGTRFASRNFPRYLLEHIHQHDIPPSAITLEITETA 533

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEK 894
            M +  +S   L  L+ +GI + LDDFG+  S L YL  +   T+K + +L+    +  +
Sbjct: 534 AMKDIAKSLETLAELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDADPQ 593

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             AI+ S++ +A  +   ++A+ +     ++ L  MGCD +Q   +A PL       +L 
Sbjct: 594 GRAIVGSMVALAHELRMKVVAEGVESASQLEILHGMGCDEVQGYLLAVPLDSPGFADVLH 653

Query: 955 ERFPLV 960
              PL 
Sbjct: 654 AARPLA 659


>gi|238063202|ref|ZP_04607911.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885013|gb|EEP73841.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 695

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 129/675 (19%), Positives = 263/675 (38%), Gaps = 22/675 (3%)

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFI-W 350
            +A++  +++  P   A      L +  L     +        ERA    P W  +    
Sbjct: 39  LLALIVLLAYDAPEPAALATVPALVTGALLTAAGVRRVAGGDPERAGGPAPVWPRVSAPA 98

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLA 410
            I    A    +      P ++   + ++  +    +        ++  + +        
Sbjct: 99  GIATVAAGVHLVTYGPFTPGMILLGLAVIPPLVVRELISATDNRRYAGRLAAQEAYFRAL 158

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           V G  D++   D        +P  A +  L    + G    +   +H +D      +LD 
Sbjct: 159 VSGGNDLILLLDGTLRVRWQSPAAARLFALTDADVLGRY--FADLLHPDDAPQAAQLLDE 216

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +   R  L    R+R     +      +        ++   +    D+ E+++    + 
Sbjct: 217 VLAGARPTL-LPARMRDGHGVWRETESTVSDQRGVP-EVHALVLHVRDVGERRRLERAVQ 274

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+ NR+        +L            ++V+D+     IND  G A GD 
Sbjct: 275 QLAATDQLTGLANRR-------ELLCELRARRGGSGALLVVDLHGLGAINDGRGHAFGDV 327

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE- 649
           V+V + RR+       D++ARL G+ F ++  ++   +        +  +++ P  +   
Sbjct: 328 VVVEVARRLRAAAGAEDLVARLVGDEFAVL--TDAGPVLAYALGTRLLAALSQPYRVAGP 385

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMI 707
            E+ + ASIG A  + +     ++L+ A+LA   A   G + +E +   +      R+ +
Sbjct: 386 DEVRLQASIGLAEVSGAG--PDDVLRQADLARRRATQLGRDRIEWYDAYLEEQLVRRLDL 443

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + +L  A    EL LVY P++ L D   VG EAL++W  P  G +  +E + +AE+L ++
Sbjct: 444 ERELPGAAARGELDLVYQPVLGLADGLPVGTEALLRWRSPVLGTVLPAELLPVAEDLDLV 503

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L+R  R +  W        +++ +N+  ++L+ ++  +   A+++    +  R
Sbjct: 504 GEVGRWVLDRACRQLADWSA--GNRRLWMSVNVTPRELVASDFLQRTAAVLATYGIAADR 561

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +E  V          L  LR +G+   LD F    + L+ L  +P D +K     
Sbjct: 562 LVIEVAEPRVGPELPALVARLAGLRSLGVRTALDGFRAAHASLAQLRRLPIDLLKLAPQR 621

Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +      +   ++ +   +   I+A ++         +R GC Y Q   +A P    
Sbjct: 622 ADAAEAGPSPLTSVVVSLGDRLGLEIVAAELETPAQTDAASRAGCRYGQGYALARPATAE 681

Query: 948 SILKLLKERFPLVKN 962
            +    +E FP    
Sbjct: 682 RVEAYFEE-FPSTSR 695


>gi|262403218|ref|ZP_06079778.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262350717|gb|EEY99850.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 616

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 202/438 (46%), Gaps = 18/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      D+LTG+ NR    ++L+T +     +     T+  +DID+++ IND+ G  +
Sbjct: 175 QLRHEISHDSLTGLMNRNDLAEKLSTFI----QEGQQHFTLAFLDIDEFRSINDLYGHYI 230

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +   I + +    +  R++ + F  I        +      ++   +A     
Sbjct: 231 GDLVLKFVADAIAKAVPEEHLAFRIAADEFAFI----TTDREPMKVCQSILNLLAQDFVN 286

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            E +I V+ SIG A +   K+T+ ++L NA LA+   K      +  +            
Sbjct: 287 QELQIKVSVSIGIAKYNGEKVTADQLLFNASLALKECKRNHNTKIRFYDTLLSNQYYRRT 346

Query: 707 -----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L      +ELY+V  PI++   ++    E L +W     G +S  EF+  A
Sbjct: 347 QIIDALRHELSKPFHQTELYVVAQPIVKRNQQDWRYFEILTRWKSSLLGFVSPIEFIEAA 406

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISK 820
           E+  +I  +   +LE       S  +Q     + + IN ++ +L ++    E +   ++K
Sbjct: 407 EQSGLIIELGEQILELAC-IAKSELEQGLGHKVRLSINCSADELTNSNRYLEYLLKTLNK 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             Y P    +  +E+V++     +R +L  LR++G  + LDDFGT  S L+Y+   P D 
Sbjct: 466 YGYQPDEFTIELTETVLLSKAVEARSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDC 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +      +   +++  II +A  ++  ++A+ +  +  + +L +MGC+ IQ  
Sbjct: 526 IKIDATFVHNLLTNQTAESVVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGY 585

Query: 939 HVASPLGFNSILKLLKER 956
           + + P   + I+K  +++
Sbjct: 586 YFSKPELPSKIVKQWQQK 603


>gi|288940417|ref|YP_003442657.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Allochromatium vinosum DSM 180]
 gi|288895789|gb|ADC61625.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Allochromatium vinosum DSM 180]
          Length = 712

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 116/578 (20%), Positives = 236/578 (40%), Gaps = 15/578 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +  V A     + +       +     + + V   D     V        I G A  
Sbjct: 133 VIEMCDVTAMREAERRMLQS----AAVYAATSEGVLITDSEGIVVAVNAAFTQITGYAES 188

Query: 444 SMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G     L    H   R  F  +    +  R+G  Q E   R  + + +   + IR +
Sbjct: 189 EILGQKPTLLNAQWHS--RVFFINLWRRLL--RQGSWQGEIWNRRKNGEIYRQRLTIRRV 244

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G ++ ++G+  + T    +          D LT +PNR     RL   ++L    +
Sbjct: 245 LDPRGRLINFVGLFAERTASPGTPRLAEHLIHYDALTKLPNRLLLESRLDHAIELGRRKE 304

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    + + D+D +  IN  LG  +GDD+L ++  ++ E ++  D LARL  ++F ++  
Sbjct: 305 SP-LALFIADLDHFSHINASLGYQIGDDLLRAIGLKLREAIRPSDTLARLHADQFALLFE 363

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             ++  +I   A  ++  ++ PI +   ++ V+ SIG A  T  +     ++ NAE A+ 
Sbjct: 364 EVDDLDEIVFIANRLKTLMSAPIWIRGHQLHVSLSIGIAVSTELREDRRALMANAESALR 423

Query: 683 HAKHRGGNHVES--FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K +G N  +           +   + + L  A+  SE  L Y P + +  E +  +  
Sbjct: 424 QVKRQGRNGFQILSSAPDQVAREHRRLLDRLRAALGTSEFQLHYRPGMDMATETLDSVAV 483

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            I W+ P+ G IS    + +AEE  +I  +  ++L    R +  W D+       +++ I
Sbjct: 484 SIHWEPPELGMISQERLLPLAEESGLILELGDWILTGACRQLQDWIDRGLSIK-RLVVEI 542

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L   +L   +   +     + +R+ L FSE +++ + E+   +   L ++G+ + L
Sbjct: 543 SEAQLTRGDLARTVAQRLEDYPAAATRLDLEFSERLLVKHREQIAEVFQGLNELGVGICL 602

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDI 918
            + G   +  + L  +P   +K + + +    +     A++ ++I MA+ +   I A  +
Sbjct: 603 GEVGIGWTAPALLQRLPIRALKIHSNFIEALPDAHHELAVVEALIAMAQALGLEIRADGV 662

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +    +L  +GC   Q      PL        +  +
Sbjct: 663 RTKEQQYQLLSIGCLKAQGDLFGEPLRAAQFESRMTPQ 700


>gi|326795076|ref|YP_004312896.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Marinomonas mediterranea MMB-1]
 gi|326545840|gb|ADZ91060.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Marinomonas mediterranea MMB-1]
          Length = 766

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 112/445 (25%), Positives = 199/445 (44%), Gaps = 13/445 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  ++L+     A  D LT +PNR  F +     L  S + +    +++ ID+D +K +N
Sbjct: 322 QLNQNLQASRDMAVTDALTMLPNRLRFHEFAKKALTRSKSKE-TFLSLIYIDLDNFKFVN 380

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPD------ILARLSGNRFGIILISENNSLKIADFA 634
           D  G   GD++LV  +    EL+K         +++RLSG+ F I+L       +  +  
Sbjct: 381 DRFGHEAGDELLVEASTSFFELIKQGGRRRYGSMVSRLSGDEFAIVLSHNELKER-EELG 439

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +              + V+AS+G A++         ++ NA++AMYHAK  G N  + 
Sbjct: 440 ERIVSLFEGGFQTNRYRMPVSASVGIATYPQDGNELRGLIANADMAMYHAKRSGKNRFDV 499

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +     +  R    I++ L     + E  LVY P     D ++VG+E L++W  P  G I
Sbjct: 500 YSEDIAQEARRTKAIEDALKFVDCDKEFSLVYMPYTN-RDGKVVGVEVLLRWFSPSLGVI 558

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+ IAE+      I+ ++ E+    I + +   N   I + +N+++ +L    L E
Sbjct: 559 QPDEFVPIAEQTGSFSKIDGWVFEKAFEQISALQGLLND-DIIVSVNLSAAELGRPSLVE 617

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L  +       I+L  +E+      E+   +L  LR +G  +T+DDFG   + L  
Sbjct: 618 RLVELQKQFNLPAGVIELEITETFGYFEVEQVLEVLVDLRSLGFGITIDDFGIGYTPLLQ 677

Query: 873 LGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           +   P D VK + +L+          +L   I +      ++ A+ +  ++  + L R G
Sbjct: 678 MIDYPVDKVKLDKALVNRITHADYKMLLEPTIQLCHLQNISVTAEGVENDVQHQYLHRFG 737

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CDY Q   +A P+    +    KE 
Sbjct: 738 CDYFQGYWLAVPMTLEDLGNWYKEY 762


>gi|256822973|ref|YP_003146936.1| diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
 gi|256796512|gb|ACV27168.1| diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
          Length = 499

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 198/437 (45%), Gaps = 9/437 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++++E        D +T +P    F   L   L       N    ++ +DI+++ ++N 
Sbjct: 64  LRRAVEDTEKLLTLDPVTQLPRHYQFTRLLDKQLSNLP--GNKVLILIYLDINRFSQLNQ 121

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD VL  +T ++ E      ++ RL  ++FG+ +  +N+   I +    + + +
Sbjct: 122 EFGHQAGDRVLQKITSQLWEYFHDNSLMGRLGSDQFGLAVTIDNDRDIIDNLPELVFRQL 181

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                    +I    S+G A   +    S  +L  A +A+++AK  G      F      
Sbjct: 182 HK--ASETLQIPFKLSMGVAIAPTDGSQSKSLLSAASVALHNAKIHGEEQYSFFSRELSE 239

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++   +  +L  +      ++VY P + +   ++VG+E L++W HP+   I   +F+ 
Sbjct: 240 IAQLRQNLINELKKSELFQHFHIVYQPQLSISTRKVVGVEVLLRWIHPELDFIPPDQFIP 299

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE++ ++  I  +++    +++    +        + INI++K+L   E  + +  +  
Sbjct: 300 VAEDIGLMPDITRWVITNAKKELSD-SELIPSWVDRVSINISAKELNIEEQVKNLHDIFQ 358

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +        +L  +E+  + +   S+  +  L+K+G+  ++DDFGT  + LS L  +P D
Sbjct: 359 EYHSFAKICQLEITETTAIYDISTSQKFIKSLKKLGLRFSIDDFGTGFTSLSNLKNLPVD 418

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +           I++SI+ +AKN     +A+ +  E  +  L + GC   Q 
Sbjct: 419 ELKVDRSFIDKIETEHNSQIIVKSIVDLAKNFGINSVAEGVENENQLNFLKQCGCKEAQG 478

Query: 938 SHVASPLGFNSILKLLK 954
            + A P+G + + K LK
Sbjct: 479 YYFAKPMGVDDLEKYLK 495


>gi|150261048|ref|ZP_01917776.1| diguanylate phosphodiesterase [Yersinia pestis CA88-4125]
 gi|165926992|ref|ZP_02222824.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936875|ref|ZP_02225441.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166009605|ref|ZP_02230503.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213388|ref|ZP_02239423.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400678|ref|ZP_02306187.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421129|ref|ZP_02312882.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426631|ref|ZP_02318384.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229836423|ref|ZP_04456590.1| diguanylate phosphodiesterase [Yersinia pestis Pestoides A]
 gi|229839698|ref|ZP_04459857.1| diguanylate phosphodiesterase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229841782|ref|ZP_04461938.1| diguanylate phosphodiesterase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904319|ref|ZP_04519430.1| diguanylate phosphodiesterase [Yersinia pestis Nepal516]
 gi|270488072|ref|ZP_06205146.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294504280|ref|YP_003568342.1| hypothetical protein YPZ3_2170 [Yersinia pestis Z176003]
 gi|45437975|gb|AAS63524.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|115349602|emb|CAL22576.1| putative membrane protein [Yersinia pestis CO92]
 gi|149290456|gb|EDM40533.1| diguanylate phosphodiesterase [Yersinia pestis CA88-4125]
 gi|152961843|gb|ABS49304.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pseudotuberculosis IP 31758]
 gi|162353425|gb|ABX87373.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis Angola]
 gi|165915117|gb|EDR33728.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921098|gb|EDR38322.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165991527|gb|EDR43828.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205329|gb|EDR49809.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961258|gb|EDR57279.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167050046|gb|EDR61454.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054406|gb|EDR64222.1| putative diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169748889|gb|ACA66407.1| diguanylate cyclase/phosphodiesterase [Yersinia pseudotuberculosis
           YPIII]
 gi|229678437|gb|EEO74542.1| diguanylate phosphodiesterase [Yersinia pestis Nepal516]
 gi|229691121|gb|EEO83174.1| diguanylate phosphodiesterase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696064|gb|EEO86111.1| diguanylate phosphodiesterase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706491|gb|EEO92498.1| diguanylate phosphodiesterase [Yersinia pestis Pestoides A]
 gi|262363699|gb|ACY60420.1| hypothetical protein YPD4_3516 [Yersinia pestis D106004]
 gi|262367633|gb|ACY64190.1| hypothetical protein YPD8_3522 [Yersinia pestis D182038]
 gi|270336576|gb|EFA47353.1| diguanylate cyclase (GGDEF) domain protein [Yersinia pestis KIM
           D27]
 gi|294354739|gb|ADE65080.1| hypothetical protein YPZ3_2170 [Yersinia pestis Z176003]
 gi|320017324|gb|ADW00896.1| diguanylate phosphodiesterase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 671

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 247 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 304

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   D+LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 305 QRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 364

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 365 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 424

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 425 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 484

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 485 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITE 542

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 543 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 602

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 603 PEDD-AIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 661


>gi|260893212|ref|YP_003239309.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4]
 gi|260865353|gb|ACX52459.1| diguanylate cyclase/phosphodiesterase [Ammonifex degensii KC4]
          Length = 469

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 184/426 (43%), Gaps = 20/426 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+PNR     RL   L  +      +  ++ +D+D +K +ND LG   GD
Sbjct: 46  RFLATHDFLTGLPNRYLLEARLKKALARARR--GHQGALLFLDLDNFKLVNDTLGHGAGD 103

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
             L  +   +   L+  D+LAR+ G+ F ++L       +    A  +R+ +   P+ + 
Sbjct: 104 RALRFVVELLRRNLRKGDLLARVGGDEFAVLLEGV-ELEEARAVAERLRQVVDETPVVID 162

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES----FRVSSFRSDR 704
                +  SIG       K+   + L  A+ A+Y AK RGGN           ++  S  
Sbjct: 163 GHTFNLGLSIGITPL-DGKMDVQKALGRADAALYAAKERGGNACVVVGPGEDPAAASSAA 221

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
                 +  A+      L++ P++ + D  I+  EAL++        I    F+ +AE  
Sbjct: 222 SYWLGQIKSALRKEGFVLLFQPVVSVGDARIIYYEALLRMRAEDGSLIPPGSFIPVAERF 281

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++  I+ +++    + +         P + + +N++   + D ++ E +   ++++  +
Sbjct: 282 GLMPQIDCWVVRTAVKVLR------GNPDLKLFVNLSGASVGDEKVLECITRAVAESGIN 335

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP---FDTV 881
           P ++    +E+ V  + ER+R  L  LR +G    LDDFGT  S  S  G +     D +
Sbjct: 336 PRQLGFEITETAVAKDFERARGWLAELRNLGCRFALDDFGTGYSSFSLFGLLAEDFLDYL 395

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K  G  +  +       ++++++  +A       +A+ +  E     +  +G D++Q  +
Sbjct: 396 KIAGPFVREAVKKPSFKSVVQAMTTVAAAFGKETVAEWVEDEAAFTLVKEVGVDHVQGFY 455

Query: 940 VASPLG 945
           +  P  
Sbjct: 456 LGEPQP 461


>gi|54297069|ref|YP_123438.1| hypothetical protein lpp1114 [Legionella pneumophila str. Paris]
 gi|53750854|emb|CAH12265.1| hypothetical protein lpp1114 [Legionella pneumophila str. Paris]
          Length = 775

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 236/555 (42%), Gaps = 18/555 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILD 469
           +  + + +   D     +        + G     + G        +H   + + F   L 
Sbjct: 100 ISSAFEGIIIIDPEGTILEANNAFMKMTGYTEKEVIGQKPV---LLHSRKQNEKFYKQLW 156

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  + G+   E   +  + +     + I  + NS+GD++ YIG  +D+T  KK  + I
Sbjct: 157 KILTEK-GQWSGELWAKKKNKRLFPAFLTISAVKNSDGDVINYIGYYHDLTLIKKQEQQI 215

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI--AV 587
               + D LTG+PN+     RL  +++  +  +N    +  I I      N +L     +
Sbjct: 216 ESFKYYDYLTGLPNKLLLTQRLQMLINRLSE-ENKELIIFNIRIFDSNSKNSLLDFLPNI 274

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +++ + +RI          +R+  + F ++   ++    +A  A  M + ++ P ++
Sbjct: 275 RDKIILEVVKRIDRTSPKKMFFSRIGLSEFIVVYFIKSRIEVMASIAQRMIEKLSCPYHI 334

Query: 648 LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS---D 703
             + I +   IG  ++  +   ++ + L+ +E+A + A+ RG N  E F           
Sbjct: 335 SHKTIILQTIIGLTAYYKNTAFSAEDFLQQSEVARHKAQIRGINIFEFFDPQVEEQIIEF 394

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  +  A+  +EL + Y PI+ L   E+ GLEAL++W HPK G +   +F+   + 
Sbjct: 395 NKRIES-VSKAIMLNELKIYYQPIVELSTAEVAGLEALLRWKHPKKGLLLPKQFLSDIDN 453

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL- 822
             +   +  ++L ++   I           I I IN+++  L      + +   ++    
Sbjct: 454 HPLSLQLGDWVLHQVLEQIEKLLACG--IKIPIHINVSAYQLQHPNFVKKLFDTLALYPS 511

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I L   E+  + +      ++   +  G++ +LDDFGT  + L++L  +    VK
Sbjct: 512 VPPHLIMLEVLETQAIEDLILVSQIIAECKTKGVNFSLDDFGTGYASLTFLKELNTAEVK 571

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +       K + IL+++I   + I  T++A+ +      K L   GC+ IQ   +
Sbjct: 572 IDRSFIIDIFDNPKELVILKTMIEFCRVIGRTLVAEGVETIAHGKLLNLFGCNLIQGYAI 631

Query: 941 ASPLGFNSILKLLKE 955
           A P+    ++  +K 
Sbjct: 632 AKPIPATKLIPWIKN 646


>gi|167467295|ref|ZP_02331999.1| biofilm formation regulator HmsP [Yersinia pestis FV-1]
          Length = 660

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 99/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 236 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 293

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   D+LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 294 QRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 353

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 354 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 413

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 414 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 473

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 474 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITE 531

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 532 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 591

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 592 PEDD-AIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEA 650


>gi|262169005|ref|ZP_06036699.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262022704|gb|EEY41411.1| GGDEF family protein [Vibrio cholerae RC27]
          Length = 560

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 189/435 (43%), Gaps = 19/435 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      DNLTG+ NR    ++LT ++     +D    T+  +DID+++ IND+ G  +
Sbjct: 124 QLRHEISHDNLTGLMNRNDLAEKLTALV----QEDRHHFTLAFLDIDEFRSINDLYGHYL 179

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +   I + +       R++ + F  +        +       +   +A     
Sbjct: 180 GDLVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYID 235

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            +R + ++ SIG A ++  K+ + ++L NA LA+   K      +  +            
Sbjct: 236 QDRRLKISVSIGIAKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRT 295

Query: 707 -----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L   +  +ELY+V  PI++         E L +W+    G ++  EF+  A
Sbjct: 296 QIIEALRSELSKPIHQTELYVVVQPIVKKHQSNWDYFEILTRWNSSTLGVVTPLEFIEAA 355

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISK 820
           E+  +I      +LE          +Q     I + IN ++ +L  +    E +   I  
Sbjct: 356 EQSGLIVEFGERILELAC-IAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKA 414

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +      +  +E+V++        +L  LR++G  + LDDFGT  S L+Y+   P D 
Sbjct: 415 YGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDC 474

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +      +   +I+  II +A  ++  ++A+ +  +  + +L +MGC+ IQ  
Sbjct: 475 IKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGY 534

Query: 939 HVASP-LGFNSILKL 952
           + + P L    I + 
Sbjct: 535 YFSRPDLPSVMIERW 549


>gi|291287640|ref|YP_003504456.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884800|gb|ADD68500.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 903

 Score =  360 bits (924), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 224/572 (39%), Gaps = 36/572 (6%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           +   +  + + AT           ++   AV  S  +    D        +    + +G 
Sbjct: 355 IHSTSQRKQLTATTKKLAEASRKNKQYMDAVDASNFVSIA-DQKGRVKYISNTYLSAIGY 413

Query: 441 ASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           +S  + G   + L   H   D   ++T++ +    R          +  +    ++   +
Sbjct: 414 SSDEVIGQKHHMLN--HPEMDVKRYKTLIKTVSSGRI--WVGILLNKTKNGDTLYLETSV 469

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ N +G I  Y+ +  DIT+       I    +QD LTG+PNR     RL        
Sbjct: 470 VPIQNEDGVITEYLSVRKDITKVIMQQREIQSQ-YQDVLTGLPNRVKM--RLD------- 519

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +    P V +++ID +  IN   G+  GD +L S+  ++  L+     + R+SG+ FGI
Sbjct: 520 RNRATLPAVALMNIDGFSAINTYYGMEGGDYLLKSVAGKLAALIPDRMSVYRVSGDEFGI 579

Query: 620 ILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +     +          +   I+       E E+  + + G A            +  A 
Sbjct: 580 LCYDVTDYDAFNSVIQDILNKISKSTFIYKETEMHFSLTAGTA------SGMETTITKAG 633

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEI 735
           +A+  AK    + +      S         +    L  A+ + ++   + PI+     EI
Sbjct: 634 IALRQAKKNKKSFMTYDEAESEMEKIRETVKYSGSLRDALSHEKIIPYFQPIVDTATGEI 693

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +  EAL++ ++ K   ++ + F+ +++ L +  +++L MLE+    +    +        
Sbjct: 694 IKYEALMRIENEKGDIMTPNMFLSMSKSLKLYNSLSLMMLEKSLNSLSDTVND------- 746

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN   +D+ +N+       +IS+      RI +  +ES  + N +   + + R +K G
Sbjct: 747 ICINFDMEDIRNNKFQTYFFDIISQKNLQ-GRITVEITESEGIDNMDELSVFIARAKKHG 805

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
             + LDDFGT  S   Y+  +  D +K +GS+        +   +  +I+ M +      
Sbjct: 806 CLIALDDFGTGYSNFMYILSLQPDFLKIDGSITRQINVSGRARLLTSTIVEMCRQAGIKT 865

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +A+ +  +     +  +G DY Q      P  
Sbjct: 866 VAEYVSTDEIYSTIKEVGVDYCQGYLFGKPAP 897


>gi|152964492|ref|YP_001360276.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359009|gb|ABS02012.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 609

 Score =  360 bits (924), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 87/419 (20%), Positives = 180/419 (42%), Gaps = 22/419 (5%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR+ F   L   +  +  D +L   +  +D+D +K +ND  G   GD +L
Sbjct: 186 ADHDGLTGLLNRRGFDQALDRAVAAAGPDGSLAAAL--VDVDHFKAVNDGDGQGAGDRLL 243

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L  ++   L    +LAR  G+ F ++L        +         +  +  +     +
Sbjct: 244 RELAAQLTTALPRDAVLARYGGDEFAVLLPGRCGREALDLVEGLRAGTRTVAFSAGVAHL 303

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
                           + +++++ A+ A++ AK  G                  +  DL 
Sbjct: 304 FP------------GESGADLVRRADAALHAAKVSGRGRS-----RLDDVGSAELARDLS 346

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   ++   + PI+     E+VG+EAL +W HP  G +  +EF+ +AE   +I  +  
Sbjct: 347 EALAAGDVRAWFQPIVVPSTGELVGVEALARWTHPLRGPVPPAEFVPVAETTGLIVEMGA 406

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L    R   + R+      + + +N++ ++L+ +   E +  ++  T +    + +  
Sbjct: 407 AILADACRGARTLREAWGR-DLLLTVNVSGRELVRDGFAEHVHDVLRATGWPADLLVVEV 465

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES++ G+   +   L  LR  G+S+ +DDFGT  S  S L  +P D +K +   +    
Sbjct: 466 TESLLDGSTGTALRALEDLRAFGVSVAIDDFGTGYSAFSRLDTLPADYLKLDSGFIAEIT 525

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            + +R  +L++++ ++  +   ++A+ +        LT +GC   Q       +    +
Sbjct: 526 TSPRRAGVLQALLSLSHALGLEVVAEGVETPEQADLLTGLGCPLAQGWLFGRAVPPGEL 584


>gi|261212769|ref|ZP_05927053.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260837834|gb|EEX64511.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 613

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 202/466 (43%), Gaps = 31/466 (6%)

Query: 515 IANDITEQKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           IA+D+ E K+                  DNLTG+ NR    ++L  ++           T
Sbjct: 156 IAHDL-ECKQMAARSQSLVNQLRHEISHDNLTGLMNRNDLAEKLDALIQR----GQHHFT 210

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +DID+++ IND+ G  +GD VL  +   I + L       R++ + F  +       
Sbjct: 211 LAFLDIDEFRSINDLYGHFLGDAVLKFVANAIEQALPQEHHAFRIAADEFAFL----TTD 266

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +       +   ++      +R I V+ SIG A ++  ++T+ ++L NA LA+   K  
Sbjct: 267 HEPMKICQTILNKLSQDYVDQDRRIKVSVSIGIAKYSGERLTADQILFNASLALEECKRN 326

Query: 688 GGNHVESFRVSSFRSDRVM------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
              H+  +                 ++ +L   +  +ELY+V  PI++   +     E L
Sbjct: 327 HNTHIRFYDTLLSNQYYRRTQIIDALRSELSKPIHQTELYVVVQPIVKRNQQTWDYFEIL 386

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W     G ++  EF+  AE+  +I  +   +LE          +      + + IN +
Sbjct: 387 TRWKSSSLGFVTPLEFIEAAEQSGLIIELGERILELAC-IAKMELEHGLERKVHLSINCS 445

Query: 802 SKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +L ++    E +   I    + P+   +  +E+V++        +L  LR++G  + L
Sbjct: 446 ADELTNSNRYLEHLLKSIQTYGFQPTEFTIELTETVLLSKAAEVCSVLTVLRELGFRIAL 505

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+Y+   P D +K + + +      +   +I+  II +A  ++  ++A+ +
Sbjct: 506 DDFGTGYSSLNYIHSYPIDCIKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGV 565

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILK-LLKERFPLVKNT 963
             +  + +L +MGC+ IQ  + + P     +   +++ + P    T
Sbjct: 566 ENQQALDKLYQMGCEQIQGYYFSKP----DLPSVMVERQLPSTPQT 607


>gi|261250358|ref|ZP_05942934.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio orientalis CIP 102891]
 gi|260939474|gb|EEX95460.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio orientalis CIP 102891]
          Length = 766

 Score =  360 bits (923), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 210/458 (45%), Gaps = 16/458 (3%)

Query: 503 SNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            N++ +I R      D+  E   S +     A  D+LT + NR  F   +   L  +   
Sbjct: 292 LNNDNEIGRLSIRFYDMYKELNSSYQKTKAMAENDHLTQLANRYQFQTYVERSL--AQKL 349

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSG 614
            +    ++ ID+D +K +ND  G  +GD +LVS    I  +    +       + +RLSG
Sbjct: 350 IHKFAWILYIDLDNFKYVNDKYGHHIGDSLLVSFAEHIKRISLEYERRHGIKCLASRLSG 409

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F I + + +N+    D A A+ + I  P         +TASIG  S+        ++L
Sbjct: 410 DEFAIFIAAAHNTNYAEDLAHAVLEPIQNPAYSSIGNFPITASIGITSYPDDGTELVKLL 469

Query: 675 KNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            +A+ AMY AK  G N +  +          +  ++  L      +E  L+Y P      
Sbjct: 470 SHADTAMYQAKRAGKNQIAYYSKALDDVARRQAQVERALRNGDLENEFTLLYQPYFDRSG 529

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           E I G+EAL++WD P+ G ++ SEF+ I+E++ +   I+ +++++  +D    +      
Sbjct: 530 EVIKGVEALLRWDSPQLGKVNPSEFIPISEQIGLFGTIDRWVIKQAFKDFTKLQGCF-ET 588

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           PI + IN++S +L   +L   +Q+L+ +   +P  I    +E+    +       L  L 
Sbjct: 589 PINLSINLSSAELDSLQLASDIQSLMLRYPVTPHLIDFEITETFASDSQSYLL--LHELA 646

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIET 911
           ++G  LT+DDFG+  + ++ L   P   +KF+   +          +++ ++ +  +   
Sbjct: 647 QMGFKLTIDDFGSGYTSITQLVEYPVQKIKFDREFLETLIKTNNHQVVKPLVDLCHSQSM 706

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            + A+ I  E   + L    CDY+Q  +++SPL    +
Sbjct: 707 IVTAEGIESEEMHRWLAENKCDYMQGFYLSSPLSLAQL 744


>gi|117919519|ref|YP_868711.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611851|gb|ABK47305.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 508

 Score =  360 bits (923), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 101/418 (24%), Positives = 195/418 (46%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT ++         + T+++IDI +++ +ND+ G   GD +L   
Sbjct: 83  DKLTGLNNRVGLKRSLTALM------PITQGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +      +  ++      ++    +P  + +  ++V 
Sbjct: 137 AERLTSLSLKPKLIARLNGDEFFLYYEQSLSEEQLLHLRGRLQ----VPFKIKDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG           S ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 MQIGCLQLAKHHADVSHMLRRLDLALKKARATRSAIACYSENDDIRQLRELKIIDSLPSG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + LY+VY P   +       +EALI+W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 253 LQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPGEFIPLAECAGMIDLVSNWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++ +  + WR       + + +N++++DL    L   +   +      P  + +  +E
Sbjct: 313 LEQVLQQQVKWRAAG--VSVCVALNLSTRDLDSETLPHDIATRLEHYKLPPECLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R++G+ L +DDFGT  S L+YL ++P + VK + + +      
Sbjct: 371 STLMADLNKAVDTLEQIRRLGVKLAIDDFGTGHSSLAYLKHLPANEVKIDKAFLRDLEPN 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + +        L +MG D IQ    A P+    + 
Sbjct: 431 QPSEYILEASINIAKKLGYEVTVEGVETLNIHDMLVKMGVDRIQGIFYAKPMRAAELE 488


>gi|88812249|ref|ZP_01127500.1| hypothetical protein NB231_02578 [Nitrococcus mobilis Nb-231]
 gi|88790500|gb|EAR21616.1| hypothetical protein NB231_02578 [Nitrococcus mobilis Nb-231]
          Length = 1285

 Score =  360 bits (923), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 95/446 (21%), Positives = 186/446 (41%), Gaps = 16/446 (3%)

Query: 519  ITEQKK------SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            +TE++         + ++  A  D LTG  NR++    L   L       N    ++   
Sbjct: 839  LTERQWQKKLQDLHDELVRFATHDPLTGCLNRKALQKALEQ-LPSGREAHNQWHALLYFA 897

Query: 573  IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            +D +K IN  LG   GD++L  +  ++ E +     +AR+ G+ F ++    + +     
Sbjct: 898  LDGFKVINSTLGHEGGDELLQQVADQLRESIAGRGCVARMGGDEFAVLAEHCSANEARVL 957

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
                            +  +TV+AS+G   +T    +   +LK+A+ A   AK+ GGNH+
Sbjct: 958  AEQQRLALYERRFVRDDESLTVSASVGVVPFTLESRSPKGLLKDADEACLAAKNAGGNHL 1017

Query: 693  ESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIV--GLEALIQWDH 746
                       ++         +  A+E  +L L    I  + D+  +    E LI    
Sbjct: 1018 HMLTPDDRELKQLRSSMAQAAQVDKALETGKLRLRCQRIQPIADDPALRPFYEILISILG 1077

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            P    I   +F+  AE    + A++ +++  +        D       F  +N+    L 
Sbjct: 1078 PTDHLIPPKDFIPAAERFGRMTAVDRWVIREVLDWCAHNGDALTTLDGF-TVNLCGPTLN 1136

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            D +L   +++ + +T  S   +    +E+  + N  R+  L+  ++++G   +LDDFG+ 
Sbjct: 1137 DGDLANYLRSQLDRTGVSGELLCFEVTETAAVQNLARAADLIREVKELGCRFSLDDFGSG 1196

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S  SYL  +P D +K +G  +          A++RSI  +   +    IA+ +  +  +
Sbjct: 1197 LSSYSYLKNLPVDYLKVDGQFVRDIDRDEADHAMVRSINELGHFLGKRTIAEFVENDKVL 1256

Query: 925  KELTRMGCDYIQDSHVASPLGFNSIL 950
             +L  +G D+ Q   V  P+    ++
Sbjct: 1257 YQLKDIGLDFAQGYGVGRPMPIEELI 1282


>gi|323495946|ref|ZP_08101012.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
 gi|323318981|gb|EGA71926.1| GGDEF family protein [Vibrio sinaloensis DSM 21326]
          Length = 613

 Score =  360 bits (923), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 198/427 (46%), Gaps = 18/427 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DNLTG+ NR    D+L  + ++         T+  IDID +K IND+ G  +GD ++  
Sbjct: 182 HDNLTGLLNRSFLADKLERLTEM----GTAPFTLAYIDIDNFKSINDLYGNYIGDQIIKF 237

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +   E +    +  R++G+ F  I +S +           + + +          I V
Sbjct: 238 VAKTTEEAVHDKQLAFRIAGDEFAFISLSGDPFE----ICNRIIEKLERGYKDPSHNIKV 293

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM------IK 708
             SIG A  TS  +++ +++ NA LA+   K      ++ +                 ++
Sbjct: 294 KVSIGIARNTSHSLSADQIMLNASLALKECKQSPQLTIQCYDTHLSAQYYRRAMIIDALR 353

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L    +++E+Y+V  PI+    ++    E L +W+    G+IS  EF+  AE+  +I 
Sbjct: 354 SELDKVTQHNEIYVVVQPIVNKGSKQWDYFEILARWNSQALGSISPIEFIEAAEQSGLII 413

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLYSPSR 827
            +   ++E          D      I + +N ++ +L +     + + A I +  + P  
Sbjct: 414 ELGERIVELACAAKKQLED-GLGHKIKLGLNCSAHELSNANRYVQHLLATIERYGFKPEE 472

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
             +  +E+V++   +  +++L +LR +G ++ LDDFGT  S L+Y+   P D +K + + 
Sbjct: 473 FTIELTETVLLSRTKEVKIILDKLRLLGFTVALDDFGTGYSSLNYIHSYPIDCIKIDATF 532

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      E   +++  II +AK ++  ++A+ +  +  + +L  MGC+ IQ  + + P  
Sbjct: 533 IRNMLTNETAESVVWLIIQLAKRLQVNLVAEGVEDQEALNKLYTMGCEQIQGYYFSRPEL 592

Query: 946 FNSILKL 952
             +I+ L
Sbjct: 593 PETIIDL 599


>gi|291530547|emb|CBK96132.1| diguanylate cyclase (GGDEF) domain [Eubacterium siraeum 70/3]
          Length = 766

 Score =  360 bits (923), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 206/453 (45%), Gaps = 20/453 (4%)

Query: 509 ILRYIGIANDITEQK--KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           I  YI I   ++ ++  K+ E +   A+ D++TG      F+    ++L      +  R 
Sbjct: 310 ITAYIVIVR-VSFRRLAKANEEVSRIAYTDSITGYGTWDKFVLDAKSLL----RHEYRRY 364

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  DIDK+K IND+ G   G+ VL  +   +   L+  +  +R++ + + I+++  ++
Sbjct: 365 ALVSFDIDKFKAINDMYGHDEGNRVLKLIADTVNRNLQDGETFSRINSDNYYILMLYSSD 424

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           S         ++      I     E     S G    T   ++   M   A++A    K+
Sbjct: 425 SDTARRIGSLIQA-----IEYEITEFVPVLSFGIYRITDKSVSIRRMGDLADIAKRTVKY 479

Query: 687 RGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQ 743
              +    +  S      +   I+ ++  A++  E  + Y P + L  +  + G EAL++
Sbjct: 480 GDDSAYTFYSESMLEKMREEKRIENEMQTALDMHEFCVFYQPKVSLDGKVNLTGAEALVR 539

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       IS  +F+ + E+   I  ++ ++++++ + I  W  ++  P + I +N++  
Sbjct: 540 WI-KDGTVISPGKFIPLFEKNRFIIKLDYYIMDQVCQKIKQW--ESYYPHLLISVNMSRA 596

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L D +  E +  +      S S I++  +ES   G+ +    +  +L+  G  +++DDF
Sbjct: 597 HLRDPQFVEKLNDICLSHGVSTSSIEIEITESAAYGSLDVLTAVFKQLKDYGFHISIDDF 656

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S L+ L  +P D +K + + +  S   + A  IL  +I MA ++    I + I  +
Sbjct: 657 GSGYSSLNMLKDLPADVLKIDRAFLAESNSNKRANDILGYVIRMAGSLGMHTICEGIETD 716

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              K L  +GC+  Q  + A P+  +S  ++L+
Sbjct: 717 DQAKLLGGLGCEMAQGFYFAKPMPSDSFEEILR 749


>gi|251771348|gb|EES51929.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 825

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 90/453 (19%), Positives = 178/453 (39%), Gaps = 16/453 (3%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G ++  + +   +       + +   A +D LT + N++ F + L   +  +   D    
Sbjct: 375 GFLVSILNVLGSVKALSLYNKEVEYFAVRDPLTRLFNQRVFWELLDYEVGRAKRHD-TSF 433

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V V+D+D +K++ND  G  VGD  L  +   +    +  DI+AR  G+ F  +L    +
Sbjct: 434 AVCVVDLDDFKRVNDTFGHTVGDRYLKEMAALLLSGTRQGDIVARYGGDEFAFVLPEV-D 492

Query: 627 SLKIADFAIAMRKSIAM----PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                     +R+ IAM    P       I  + SIG A +      + ++   A+  MY
Sbjct: 493 LAGATSIVDRIREKIAMFRMDPDVPGSPPIEASVSIGIALYPDHASNAQDLFSLADRMMY 552

Query: 683 HAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G N   +               +  L   V + + +  + P + L    + G E 
Sbjct: 553 KAKQSGKNTFRAPEPGEATHLHTAGQRESHLLDLVRSGQAFPYFQPFLDLSTRTVTGYEV 612

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +    +   + + EF+ + E   +  +++  +LE+                  +  N+
Sbjct: 613 LARLRDSEGRIVPAGEFITLVERAGLAASLDFAILEKALEQATQ-----RGLAGKLFFNM 667

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
               +   +    +   +++    P RI    +E   + N      L+  L+ +G + ++
Sbjct: 668 TPFAMAAPDFANRIVETVARFPIPPDRIAFEITERQAIKNMRLVENLIRDLKSLGYAFSI 727

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---AILRSIIPMAKNIETTIIAKD 917
           DDFG   S   YL   P D +K +G  + G+ +      AI+ SI+ +A+++    + + 
Sbjct: 728 DDFGAGFSSHHYLREFPVDYLKIDGPFILGAGKGNTVDFAIIHSIVSLARSLGIQTVGEG 787

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           I  +  +   T  G +  Q   V  P    ++L
Sbjct: 788 IEDQAALDVATACGVNLGQGYFVGRPGSAEAML 820


>gi|209967117|ref|YP_002300032.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
 gi|209960583|gb|ACJ01220.1| diguanylate cyclase, putative [Rhodospirillum centenum SW]
          Length = 611

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 128/597 (21%), Positives = 245/597 (41%), Gaps = 25/597 (4%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           + N           VL  I   F  ++  L        ++   ER  +A +G  D     
Sbjct: 33  VGNKPAPYGPEDMAVLERISGVFAAMRAAL--------LYRRRERARVASVGGQDWTAGI 84

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D        + D    LG           +    I   DR  F   ++         L  
Sbjct: 85  D---GTFRPSADFLVALGYDPA----LPPDLSALIAAEDRPAFAAAMEGAADGI--PLSV 135

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           + R+  AD +  W  +      +  G   + +GIA D   ++   +     A  D LT +
Sbjct: 136 DVRLATADGRVRWYSLFGSVDRDERGTFQQVLGIALDRESERGLSDRARWLASHDALTRL 195

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR S L+ L  I    +     +  +  +D+DK+  +N  +G+  GD +L  +   +  
Sbjct: 196 PNRSSLLNHLAEI--QGSPGGGSQIALFALDLDKFSSVNAKIGVDAGDRLLRQVADELTL 253

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L   D+L+R  G+ F ++  +     +   FA  +  ++   +   E    +TA IG +
Sbjct: 254 RLDAGDLLSRTGGDEFCLVKHAPLTPAQAGQFAEELLSAVRAVVVPDEDIGFLTAGIGIS 313

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
              +S       L+ AE A++ A+ +GGNH   F       + D + +   +        
Sbjct: 314 LS-ASGPRPETSLEQAESALHMARAQGGNHFAFFERQATERQMDEIRLSRLVSSPAFWDS 372

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L +VY   +RL D+ I+G+EAL++ D      I +   +   E++ + + +   + + + 
Sbjct: 373 LRVVYQAQVRLSDQRIMGVEALVRSDLSGQMGIGTERLIATIEDMGLTQRLGRAVRDLVI 432

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            D+ +        P+ I IN +  +  D +      A I  +  +P + ++  +E  ++ 
Sbjct: 433 ADVKAMGLTDEELPV-ISINFSPVEFADVDHVRDFIAAIKASGLNPEKFEIEITERSLLA 491

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
             E   ++   L++ G+ L LDDFG+  S L YL +I  D +K +   + G     +   
Sbjct: 492 ASEALDVVQSMLQQSGVRLALDDFGSGYSSLRYLTHIQVDKIKIDKVFINGIETNGRERR 551

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ SII +A+ ++   +A+ +      + L  +GC+  Q  H   P+G   IL++++
Sbjct: 552 VVESIIALARGLDAVALAEGVEEAGQARLLKDLGCEMAQGYHFCRPVGRTLILQMIR 608


>gi|294676660|ref|YP_003577275.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294475480|gb|ADE84868.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 727

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/581 (20%), Positives = 221/581 (38%), Gaps = 19/581 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAV--LGSGDIVWDWDIVRDRVTTTPDIAT 436
           V+++     +H+       +   +      L      +    W WD  +DR+  +  +  
Sbjct: 127 VLVLFEAERRHLFEEDQAREVALAQTRAHWLTQIERMAEVGAWCWDPAQDRLQGSDRMFD 186

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFH 493
           ILGL  G   G +   L  +        R  L + +    G    L  E  +R       
Sbjct: 187 ILGLRPGPADG-LDALLDRLVSE---PLRRQLRASLTAPGGLHPPLDLEAAIRTPAGALR 242

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            + +    +  + G + R  G+  DIT  ++  + +   A  D+LTG+ NR  F  RL  
Sbjct: 243 QIRLSCEALW-AKGRVERVQGVICDITRAQEDRQRLWRMAHVDDLTGLANRHHFRSRLRD 301

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
               +         ++VIDI  +  +N   G    D +L  +  R+  LL      ARL 
Sbjct: 302 ACAAAD-----PLALVVIDIADFGAVNHRFGADRADAMLREIGGRLASLLPGDGFAARLV 356

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L + +        A A   ++  P+      + + A++G A++         +
Sbjct: 357 GDEFALLLPAADPDAAARGLAAAAAAALEAPLAGFGGTVRLRAAMGLAAFPEDGRAPEAL 416

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-EDLCLAVENSELYLVYHPIIRLMD 732
              A+ A+   K  GG           R          +  AV+   + + Y P +RL D
Sbjct: 417 FARAKEALSEIKRAGGGADFLRGAMLARVGARRRAIGCVRDAVQEDRIRVWYQPKLRLAD 476

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
               G EAL++            ++    ++      ++  +L R+  D+          
Sbjct: 477 GAPDGHEALVRIFDRAGQISGPGDWAEALDDPECAALLDAAVLRRVLADLRRPEPGMGPG 536

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRL 851
              + +N++   L   +    +   +++   + ++I+L   E+V++            RL
Sbjct: 537 LGRVAVNVSEHSLRRGDFATHLLRALARAGVAAAQIELEIVETVLVDQRTPELVAGFERL 596

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           R  GI +TLDDFGT  + LS+L  +P D +K   S + G     +   ILR+I+ +A+ +
Sbjct: 597 RAAGIRITLDDFGTGFASLSHLRDLPIDGLKIEKSFVLGLQADARNAPILRAIVMLAQAL 656

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               +A+ +        L  +GC   Q  H   P     + 
Sbjct: 657 GLHTVAEGVESAEVADLLRDLGCQTAQGYHFGRPQPLPELA 697


>gi|258624252|ref|ZP_05719201.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258583403|gb|EEW08203.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 616

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 107/465 (23%), Positives = 208/465 (44%), Gaps = 28/465 (6%)

Query: 515 IANDITEQKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           IA+D+ E K+                  DNLTG+ NR    D+L +++  S        T
Sbjct: 156 IAHDL-ECKQMTARSQSLVNQLRHEISHDNLTGLMNRNDLADKLNSMIRCSQQH----FT 210

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +DID ++ IND+ G  +GD VL  +   I + L   +   R++ + F  +      +
Sbjct: 211 LAFLDIDGFRSINDLHGHYLGDLVLKFVADAIEKALSEEEHAFRVAADEFAFL----TTA 266

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +      A+   +A      +R I ++ SIG A +   K+T+ ++L NA LA+   K  
Sbjct: 267 HEPMKVCQAILNQLAQDYVDQDRRIKISVSIGIAKYGGEKLTADQLLFNASLALKECKRN 326

Query: 688 GGNHVESFRVSSFRSDRVM------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
              H+  +                 ++ +L      +ELY+V  PI+R    +    E L
Sbjct: 327 HNTHIRFYDTLLSNQYYRRTQIIDALRHELSKPTNQTELYVVVQPIVRRNQPDWDYFEIL 386

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W     G +S  EF+  AE+  +I  +   +LE       +  +Q+    + + IN +
Sbjct: 387 TRWKSSSLGFVSPLEFIEAAEQSGLIVELGEHILELAC-IAKTELEQSLGHKVRLSINCS 445

Query: 802 SKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +L ++    E +   I K  +      +  +E+V++     +R +L  LR++G  + L
Sbjct: 446 ADELTNSNRYLEHLLRTIKKYGFRADEFTIELTETVLLSKAAEARSILTILRELGFKIAL 505

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+Y+   P D +K + + +      +   +++  II +A  ++  ++A+ +
Sbjct: 506 DDFGTGYSSLNYIHSYPIDCIKIDATFVHNLLTNQTSESVVWLIIQLANQLKLDLVAEGV 565

Query: 919 YGEIDIKELTRMGCDYIQDSHVASP-LGFNSILKLLKERFPLVKN 962
                +++L  MGC+ IQ  + + P L      +  +++ P + +
Sbjct: 566 EDPKALEKLYLMGCEQIQGYYFSKPDLPSMMAERW-QQQLPQISS 609


>gi|295095694|emb|CBK84784.1| EAL domain./GGDEF domain [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 377

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 176/375 (46%), Gaps = 8/375 (2%)

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD +L ++   I   L     LARL G+ F I+L ++ +   +   A  +   +  P  
Sbjct: 2   FGDQLLQAVALAILSCLDEGQTLARLGGDEF-IVLATDTSQGALEAMASRILTRLRQPFR 60

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDR 704
           +   E+    S+G A           +++NA+ AMY AK  G      F   ++    + 
Sbjct: 61  IGLIEVYTGCSLGIALAPQHGNDRESVIRNADTAMYTAKENGRGKFCVFSPEMNQRVFEY 120

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  +L  A++N +L + Y P I     E+  LEAL++W  P+ G I   EF+  AEE 
Sbjct: 121 LWLDTNLRKALDNDQLLIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPMEFISYAEES 179

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  +++  + R +  WRD+     + + +N++++ L D  +   ++  +    + 
Sbjct: 180 GLIVPLGRWVMLDVVRQVAKWRDKG--ISLRVAVNVSARQLADQTIFSDLKQALKDLSFE 237

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S LS L   P D +K +
Sbjct: 238 YCPIDVELTESCLIENEELALSVIQQFSRLGAQIHLDDFGTGYSSLSQLARFPIDAIKLD 297

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +    ++    +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A 
Sbjct: 298 QAFVRDIHKQSISQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGVNERQGYLFAK 357

Query: 943 PLGFNSILKLLKERF 957
           P+   +  + LK   
Sbjct: 358 PMPAAAFERWLKRYQ 372


>gi|254506290|ref|ZP_05118433.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219550770|gb|EED27752.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 904

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 114/565 (20%), Positives = 233/565 (41%), Gaps = 18/565 (3%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +Q    D +++  A+  S  I       R+ V       ++L      +       L  +
Sbjct: 348 AQEQLLDTQQKFDALYQSQTIAMVLVREREIVDINHTALSLLDYQHEEVVHQP---LDLL 404

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +       I   +  Y +G+ Q+E ++   +       I +R +    G     + I 
Sbjct: 405 CPDSDQPECQIDRMYRMYYQGQTQFEAQMLTKNGDKIDCHIEVRSIQ-YQGSDAVMLSI- 462

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+ E K+  + I     +DNL+G+ NR++ +++    ++++        +   + I   
Sbjct: 463 RDVRENKQQAKLIEDLVERDNLSGLWNRKAIMEKARNFVEVAPNQ----FSFFYVTIPSL 518

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
              ++V G  V D+ L ++    G  L     + R+S + F +++    +  K    AI 
Sbjct: 519 MHASEVYGHQVYDESLEAIANLFGSEL-GVFPVGRISSHEFLVLIEERKDCHKAKRGAIR 577

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY---HAKHRGGNHVE 693
            +++++  + + +  + +   I   +   +  +   ++  A  A+    +  H G     
Sbjct: 578 FKEALSRKLQIQDVTMDLQCQIAMIAPDITHHSLDTLIHAAIHAIELDGNKAHNGDPIYV 637

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  +       I  DL  A+E+ E++  Y PI+     +IVG EAL +W H   G +S
Sbjct: 638 GEQTFNIAQASAAILRDLKGAIESREIHANYQPIVESKTGDIVGFEALARWQHSAHGFVS 697

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIIS---WRDQANMPPIFILINIASKDLLDNEL 810
              F+ +AE    I  +   +LE+    I      R      P+ I +N+++      +L
Sbjct: 698 PGVFIPLAERHHHIIELGESILEQSCEFIQRVNLIRRHQGKTPLTIHVNLSAAHFYHQDL 757

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +Q +I      P ++ +  +ES++MG  E     +  ++ +G+   LDDFGT  S  
Sbjct: 758 AQFLQRVIEDYAVQPGQLVIEVTESMLMGIEEEVINRMEMIKSLGVLFALDDFGTGYSSF 817

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L   P D VK + S +        A  ++R+I  MA+ +  T +A+ +      ++L 
Sbjct: 818 TTLCCFPLDIVKLDKSYIDQVESNDRAKSLVRNIANMAQELGLTTVAEGVETASQARKLK 877

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
               + IQ  +   P+    +L LL
Sbjct: 878 NWNIEEIQGFYFYKPMPEGEVLALL 902


>gi|299132864|ref|ZP_07026059.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2]
 gi|298593001|gb|EFI53201.1| diguanylate cyclase/phosphodiesterase [Afipia sp. 1NLS2]
          Length = 573

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 107/540 (19%), Positives = 220/540 (40%), Gaps = 18/540 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            +   G   + WDI  D ++ + +I  +L G+   +M      +   I          ++
Sbjct: 19  VLACLGQAAFTWDIASDALSWSANINEVLPGVPLDAME-LGAEFAKLIEPQPHIRREAVM 77

Query: 469 DSFVG--YRRGRLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                   +    Q E+ +R        W+    R  + ++G      GI     E+   
Sbjct: 78  HGSAQDMGQGVHYQIEYGLRARMSAPVVWVEETGRWFAGADGKPAYVRGILRINNERHAH 137

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   + +D LTG  NR   L          A         M+I ID   ++N+  G 
Sbjct: 138 EEQLRKLSQRDPLTGDLNRTH-LVAALAEAVEEAARFRSSFAFMLIGIDHLARLNEAFGF 196

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            V D+V+  +++RI   L+  D+L R SGN+FG+IL +             +       +
Sbjct: 197 DVADEVICEVSQRIRARLRGGDVLGRFSGNKFGLILKNCTADDMQVAAERFLAGIRDEIV 256

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                 +++TASIG  +      T+ E +   + A+  AK R      ++  +  R  + 
Sbjct: 257 PTASGPVSLTASIGAVNAPRYARTADEAMSRTQEALETAKARRRGSFHAWHPNVERDAQR 316

Query: 706 MI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +     +++  A+    + + + P++  +  +    E L++  H +     + + + +A
Sbjct: 317 RVNIRVTDEIVAALNEHRIVMAFEPVVEAVSRQPAFYECLVRMRHGEGEFSLAPDIVPVA 376

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+L +I+ ++  +LE +  ++         P + + +NI+    +D      +++L    
Sbjct: 377 EKLGLIRLVDHRVLELVVEELAQ------SPQVQLSLNISPDTTMDPNWWASIESLFRTY 430

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                R+ +  +E+V + + +  R  + RL+  G  + +DDFG   +    L  +  D V
Sbjct: 431 PGVAERMIVEITETVAIQDLDDVRGFVNRLKDFGSRIAIDDFGAGYTSFRNLRKLGVDIV 490

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G+ +     +    A ++++I +A  +    +A+ +  E   K L   GCDYIQ   
Sbjct: 491 KIDGAFVQNVARSADDRAFVQTMIDLAHRLGLKTVAEWVQDEEAAKLLQGWGCDYIQGRL 550


>gi|253580304|ref|ZP_04857570.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848397|gb|EES76361.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 596

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/541 (21%), Positives = 212/541 (39%), Gaps = 24/541 (4%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D   D             +     H  I N   +++  D +  +  LD  +   R     
Sbjct: 70  DFRTDLYYIANQALDRFCIPKNGFHNVISNHKEFVYGPDYEKMKEELDDLLKTDRCTHSM 129

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E+R         W+  +   + + N   L  IG  N+I E++K+          DN++G+
Sbjct: 130 EYRWLDLKKMPVWIQCKGYLVRDDNMKPLYMIGCINEIGERQKA----------DNVSGL 179

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
              + F + +             +  ++ I ID +K+IND  G   GD VL      I  
Sbjct: 180 LGEKGFREYMDQ-----QDTPLEKGYLLRIGIDHFKEINDNFGQEYGDFVLRKTADCISG 234

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L     + +L  + F I+ +S +           +R +    I   E ++  T S G  
Sbjct: 235 CLSEGQKVYKLVADEFLILDVSSDQVRDADKLYDKVRVATDRFIESNEFKVMYTVSGGIV 294

Query: 662 SWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENS 718
           S+ +      SE LK  + A+  AK  G N    F V ++R    +  I ++L  AV N 
Sbjct: 295 SFAALEGNQYSEALKLTDFALNEAKKLGRNRCYIFDVETYRKFLRKREITQELREAVLNG 354

Query: 719 --ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
                  Y P+     +   G EAL+++   K G IS +EF+ I EE  +I  +  +M+ 
Sbjct: 355 CQGFTAFYQPVFAEDKKVPYGAEALMRFTSEKLGMISPAEFIPILEETGLIIPVGRWMMR 414

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                    R     P   + INI+      +++ + + A + +       + +  +ES 
Sbjct: 415 EAMGKCSEIRKVL--PDFRVSINISQVQASKSDVIKDISAEMKRAGLPLEALIVELTESD 472

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEK 894
           ++      +  L  LR++GISL LDDFGT  S   YL  +  + +K + S      + E+
Sbjct: 473 LLEQNINEKHFLTELRRMGISLALDDFGTGYSNFHYLSELKPEIIKIDRSFTVKAVADEQ 532

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              +L     M  N++  I  + +  E +   + ++  ++ Q      P  +   ++   
Sbjct: 533 EYYLLNQFCTMIHNLDLRICIEGVENEQEWAMIRKLYPEFTQGYFWGKPCEYEEFMRKFT 592

Query: 955 E 955
           E
Sbjct: 593 E 593


>gi|237735585|ref|ZP_04566066.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381330|gb|EEO31421.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 739

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 198/444 (44%), Gaps = 11/444 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + +K    +   AF D+LT + N Q F      +       ++    V+ +DI+ +K 
Sbjct: 299 IRDSRKHKRMLENLAFYDHLTMLYNYQKFKTEGEKLFL---ERNHTLLAVLYLDINDFKI 355

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G   GD +L  L   + +L+  P +  R++ + F +I+ S ++  ++ +    + 
Sbjct: 356 INELYGYKYGDKILTQLANILKKLVIAPGLTCRVNADNF-LIMQSYHDRTELENLCQEIN 414

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +  L+ +      IG   +   +       ++  + LA+        N+   + 
Sbjct: 415 QKFCNLLESLDNKNNTIVKIGICCYEDDQTISGIDGLIDCSHLALNAYIPGQTNNYYFYN 474

Query: 697 VSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       I+ ++  A+ N+E      P      + ++G EAL++W  P    I  
Sbjct: 475 SKMHDQMIRKVEIENNMESALLNNEFTFYLQPKYAPNGQVMLGAEALVRWLEPSGNLIMP 534

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ I E+   I  ++ ++ E + + +   R   N+P + I INI+   L  ++  E  
Sbjct: 535 GEFIPIFEQNGFILKMDEYIFESVCKFLYQ-RIIENLPNVPISINISRLHLYQDDFIERY 593

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             + +K       ++L  +E++++ N ER R ++  L+  G + ++DDFG+  S L+ L 
Sbjct: 594 SKIKNKYSLPDKLVELEITENILLDNIERIRNIIIELQNNGFTCSIDDFGSGYSSLNSLK 653

Query: 875 YIPFDTVKFNGSLMTGS-T-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +PF+ +K +   +  S   ++   I+++I+ MAK I    +A+ +     ++ L  + C
Sbjct: 654 DLPFEVIKLDRLFLINSYDIQRSQEIIKAIVEMAKTINIKTVAEGVETPSQLEFLKMIDC 713

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D IQ    + P       +LL  +
Sbjct: 714 DMIQGYIFSKPRPIKEFEQLLINQ 737


>gi|190894966|ref|YP_001985259.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700627|gb|ACE94709.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 708

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 115/450 (25%), Positives = 207/450 (46%), Gaps = 11/450 (2%)

Query: 520 TEQKKSLE---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           TE +++L+    +   A  D LTG+ NR SF D L   L  S        +++++D+D +
Sbjct: 244 TEHRRTLDFEIKLTHLAHTDTLTGLGNRSSFNDALNG-LFGSLERTGAGFSMLLVDLDHF 302

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K  ND  G   GD VL  +   + +  +  D++ARL G+ F  +L   +++  +   A  
Sbjct: 303 KSTNDSFGHPAGDAVLAHVAAALQKTFRAGDVVARLGGDEFAALLPGISDAATLEGIAGR 362

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESF 695
              +IA   +   R + V+ASIG A           +++ A+LA+Y AK  R    +   
Sbjct: 363 AVAAIATECHFEGRLLPVSASIGGAVVPGHASDEPTLMRIADLALYAAKAKRNTAVIFDE 422

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              + R ++  +   L  A +  E  + Y   + L+    +G EAL++W HP+ G +   
Sbjct: 423 ASFAQRLEQNRLAAALAFAADRDEFVVYYQQKVDLLTSRHLGFEALVRWRHPQLGILPPG 482

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E   +I+A+   ++  + RD+ +W+         + IN+    L+  +  + + 
Sbjct: 483 RFLPLME-GHLIQAMTRCIVNTVGRDLKAWKAAGLRAG-SVAINLPEALLVSQDGYDLIA 540

Query: 816 ALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           A +           +  +E V +    E+    + R RK G+S++LDDFGT  + L +L 
Sbjct: 541 AAVKANGLDWRDFAIEVTEDVFLNRGAEQIAETISRFRKHGVSVSLDDFGTGFASLVHLR 600

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +    +      I+R+II +A+N+    +A+ I  E     L   GC
Sbjct: 601 DFPFDELKIDRSFVAEIGKDIRSEQIIRAIIDLARNLGKRCVAEGIEEEAQRGFLMTAGC 660

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           D  Q    A P   ++ ++ L  + PL   
Sbjct: 661 DIGQGYLFAKPEPASAAVERLA-QNPLAVR 689


>gi|167757338|ref|ZP_02429465.1| hypothetical protein CLORAM_02888 [Clostridium ramosum DSM 1402]
 gi|167703513|gb|EDS18092.1| hypothetical protein CLORAM_02888 [Clostridium ramosum DSM 1402]
          Length = 742

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 198/444 (44%), Gaps = 11/444 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + +K    +   AF D+LT + N Q F      +       ++    V+ +DI+ +K 
Sbjct: 302 IRDSRKHKRMLENLAFYDHLTMLYNYQKFKTEGEKLFL---ERNHTLLAVLYLDINDFKI 358

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G   GD +L  L   + +L+  P +  R++ + F +I+ S ++  ++ +    + 
Sbjct: 359 INELYGYKYGDKILTQLANILKKLVIAPGLTCRVNADNF-LIMQSYHDRTELENLCQEIN 417

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +     +  L+ +      IG   +   +       ++  + LA+        N+   + 
Sbjct: 418 QKFCNLLESLDNKNNTIVKIGICCYEDDQTISGIDGLIDCSHLALNAYIPGQTNNYYFYN 477

Query: 697 VSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                       I+ ++  A+ N+E      P      + ++G EAL++W  P    I  
Sbjct: 478 SKMHDQMIRKVEIENNMESALLNNEFTFYLQPKYAPNGQVMLGAEALVRWLEPSGNLIMP 537

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ I E+   I  ++ ++ E + + +   R   N+P + I INI+   L  ++  E  
Sbjct: 538 GEFIPIFEQNGFILKMDEYIFESVCKFLYQ-RIIENLPNVPISINISRLHLYQDDFIERY 596

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             + +K       ++L  +E++++ N ER R ++  L+  G + ++DDFG+  S L+ L 
Sbjct: 597 SKIKNKYSLPDKLVELEITENILLDNIERIRNIIIELQNNGFTCSIDDFGSGYSSLNSLK 656

Query: 875 YIPFDTVKFNGSLMTGS-T-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +PF+ +K +   +  S   ++   I+++I+ MAK I    +A+ +     ++ L  + C
Sbjct: 657 DLPFEVIKLDRLFLINSYDIQRSQEIIKAIVEMAKTINIKTVAEGVETPSQLEFLKMIDC 716

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D IQ    + P       +LL  +
Sbjct: 717 DMIQGYIFSKPRPIKEFEQLLINQ 740


>gi|260774216|ref|ZP_05883131.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260611177|gb|EEX36381.1| GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 625

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 99/454 (21%), Positives = 193/454 (42%), Gaps = 26/454 (5%)

Query: 522 QKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            +   +     A         D+LT + NR    D+L  ++D    ++    T+  +DID
Sbjct: 179 HQWMNQRFNSLAQQLSYEISHDSLTNLFNRNYLSDQLEYLVD----NNYQSFTLAYLDID 234

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND+ G  +GD V+  +   I   +   + + R+SG+ F  I  S           
Sbjct: 235 NFKSINDLYGHYIGDQVIKFVANVIFHYVNKQNQVFRISGDEFAFITFS----NDPLKIC 290

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++          I +  SIG A  +   +T+ +++ NA LA+   K      V  
Sbjct: 291 QLIIDTLNQGYRDANHHIKIRLSIGIAKKSLPPMTADQLILNASLALKDCKKTRLQQVRC 350

Query: 695 FRVSSFRSDRV--MIKEDLCLAVEN-----SELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +             +   L   ++N     SE+Y+   PI+          E L +W++ 
Sbjct: 351 YDTHLNDYYYRRTQVVSALRAQLDNPLTGTSEIYIEIQPIVFRNRPNWSYFEVLARWNNK 410

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G+IS  EF+ +AE+  +I  +   ++E          ++     + + IN ++ +   
Sbjct: 411 QLGSISPLEFIEVAEQSGLIIELGERIIELAC-QAKQVLEKELNYKVTLGINCSAHEFAH 469

Query: 808 NE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +      +  +I +  + PS   +  +ESV++         L  LR++G  + LDDFGT 
Sbjct: 470 SSHYLNHLNLMIQQYGFHPSEFIIEMTESVLLTQTGEVSERLNLLRELGFKIALDDFGTG 529

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+Y+   P D +K + + +      +    ++  II +AK +   +IA+ +  + ++
Sbjct: 530 YSSLNYIHSYPIDCIKIDATFIRNLLRNKTSEHVISLIIQLAKQLNVDLIAEGVENQQEL 589

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +L  MGCD IQ  + + P    +++  L+   P
Sbjct: 590 DKLYEMGCDAIQGYYFSKPQQPLAMIGHLQNNPP 623


>gi|317131977|ref|YP_004091291.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ethanoligenens harbinense YUAN-3]
 gi|315469956|gb|ADU26560.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Ethanoligenens harbinense YUAN-3]
          Length = 1128

 Score =  359 bits (921), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 194/430 (45%), Gaps = 10/430 (2%)

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D+LTG+   + F   L   L +S   +++   ++  DI+++ +IND++G    D VLV+ 
Sbjct: 698  DSLTGVHTYEYFHTLLKKALLIS---EDMPYVLISCDINRFSEINDLIGHDQADQVLVTF 754

Query: 596  TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
               I   L+  + + R+S + F  IL    N   +        ++    +        V 
Sbjct: 755  ASVIRRCLQPDEYIGRVSVDIF-CILAHAENKENLTARMDLWDQAFQQEVEAFHIPSNVQ 813

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
             ++G     +   T S M   A  A   AK      V  +             ++  +  
Sbjct: 814  VAVGIYEINAEADTPSIMFDRANAARKLAKTAHERMVCFYDEKLHEKILFEKDMESHMVS 873

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++E +E  +   P   L+D +I G EAL++W+HP  G +  ++F+ + E+   I  ++ F
Sbjct: 874  SLEKNEFVIYLQPKYGLVDRKIAGAEALVRWNHPTRGFLGPNDFIPLFEKNHFILELDFF 933

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            + E + R +  W D+   P + + +N +   LL N+  E + AL+ K    P  +++  +
Sbjct: 934  VFESVCRMLRRWMDE-GRPVVPVAVNFSRVHLLTNDFVEQLIALVDKYQIPPHYLEIELT 992

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
            ES  +     +  +  RLR+ G  + +DDFG   S L+ L  +P D +K + +       
Sbjct: 993  ESAYISRFHNALQIAQRLRQHGFLMAMDDFGAGYSSLNSLKSLPLDILKLDKNFFQEKEP 1052

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            T K   I+ +I+ +AK +   ++++ +  E   + L  + CD +Q    + P+   +  K
Sbjct: 1053 TPKETIIIENIVRLAKQLNLCVVSEGVELEWQAEFLCSVDCDLVQGYLFSRPIPVTTFEK 1112

Query: 952  LLKER-FPLV 960
            +L E   PL+
Sbjct: 1113 ILMEHAQPLL 1122



 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 137/309 (44%), Gaps = 6/309 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPI 449
           A     +    + +R  +    S DI++D+DI    +T T  I+ +     +    +  I
Sbjct: 195 ALRSSVEQAEMEAKRYHIIAQLSDDILFDYDIASKTMTATQPISDLYAGKTSISDFYNDI 254

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              L  +H +D D          G  + +++ E R+R+A+N F W  +    + +     
Sbjct: 255 VENL-VVHKDDVD-ALADFAGEPGGIQEKIRTELRIRSANNGFAWYRMEGAVLRDKYAKP 312

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L+ +G   +I  QK+  E +     +D +TG+ N+      +   L  +  DD     + 
Sbjct: 313 LKIVGKFTNIDRQKREKEYLTQKLQRDPMTGVFNKVVTEKLIDRYLHKADEDD--VSALF 370

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           V+D+D +K IND LG   GD VL  +   I ++L+  DI  R+ G+ F + + +  +   
Sbjct: 371 VMDLDNFKNINDALGHLSGDRVLTHVAEGIKQILRSSDIFGRIGGDEFVVFIKNIRSCTF 430

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            A  A  + +    P+   E    V+ S+G A   +   +  E+ + A+ A+Y AK +G 
Sbjct: 431 AAQKARQLCQIFRSPVLEQELRYAVSGSVGIAMSPTDGKSYHELFEKADRALYVAKGQGK 490

Query: 690 NHVESFRVS 698
           +    ++ +
Sbjct: 491 DGFAFYQNN 499



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 64/211 (30%), Gaps = 16/211 (7%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLW-----MAITKRLDNDIIQPALVGGLVLIVILIG 383
            G    ++   L     L  I+ +        +AI       +    L+G  +  V    
Sbjct: 7   CGGNRVKKKRFLNRHAALFVIYGLLTVESIYRIAIAGGAPGSLWVEFLIGAGIAGV---- 62

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           + +  H+              +R        G  +   D     +   P    I G    
Sbjct: 63  YFMAVHIYENWLTHSQFRVLVDRIH-----CGIAIIRMDEGFSLLRANPAFFRISGYTPD 117

Query: 444 SMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                  N   Y+  + D       +      +R  +  +FR+++ D +  W+ +    +
Sbjct: 118 EFLEKFDNKAIYMLCMEDHAAVYEEIKKMDTKQRVHVHVDFRIQSKDGRIKWIHMD-SFL 176

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            ++ G    +  I  DIT  + S+E     A
Sbjct: 177 FHAEGREPVFQCIFTDITALRSSVEQAEMEA 207


>gi|255658206|ref|ZP_05403615.1| putative GGDEF domain protein [Mitsuokella multacida DSM 20544]
 gi|260849515|gb|EEX69522.1| putative GGDEF domain protein [Mitsuokella multacida DSM 20544]
          Length = 699

 Score =  359 bits (921), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/560 (18%), Positives = 217/560 (38%), Gaps = 34/560 (6%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG--SMHGPIRNWLPYIHINDRD 462
           E   +A+      V  +D  +  +    +   +  +      +   + NW       D  
Sbjct: 137 ETLRMAMQNLPTGVIWFDTEQHCIYANSEAFRLFEIPDDLQELEAILTNWFQ----EDAL 192

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                      Y R      F++               P+++  G  +    + +D T+ 
Sbjct: 193 RSPEAAVWLQQYERAGAPASFQICR------------YPLNDGAGAEVGMYFLISDCTQD 240

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K+++        DNLTGI N+  F  +   ++     +  +   ++ ++   +K +N +
Sbjct: 241 QKNMDLEHFGTMHDNLTGIYNKYGFYRQARRVM---GENPGISYLMVCLNFGDFKLLNGL 297

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILA--RLSGNRFGIILIS-ENNSLKIADFAIAMRK 639
            G+  G+++L+ +   +          A  R+  +RF +++     +          +  
Sbjct: 298 YGMTKGNELLMRVGSMLRRHYGMDARTAYGRIRADRFAMLIPEAIFDPDAYLKTVETIMH 357

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRV 697
            +A           +  ++G      ++   S +   A LA    K     G    S  +
Sbjct: 358 GLAA------IHFDLQIAVGICRVEDNRTPISILCDRAFLAASVLKTQESNGYVWYSEHM 411

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S +     I      A+   E+ +     +      ++G EAL +W       I  + F
Sbjct: 412 MSEKIRDRAILSRFSDALSRGEVQIYLQAQVAADSRRVIGAEALSRWVCDDGRVIPPAMF 471

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I EE   I  ++  + E     + SW+   +     I +NI+ KD+   +L E    L
Sbjct: 472 IPILEEHGKIWQLDYHIWELACSLLKSWQGSEDFADYCISVNISVKDIYYLDLYEVFTHL 531

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    P++++L  +E+V M  P+ + LL+ RL++ G  + +DDFG+  S LS+L  I 
Sbjct: 532 VEEYKIDPAKLELEITETVFMDKPKEAILLIQRLKEYGFRIAIDDFGSGYSSLSFLKDIQ 591

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   +  +   E+   ILRSI+ +A+ +    + + +     + +L ++GCD  
Sbjct: 592 ADILKIDMGFLRKTEHQERSRIILRSIVALARELGMPTVVEGVETSQQVHDLVKIGCDIF 651

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + + P+         + 
Sbjct: 652 QGFYFSRPIPVADFETRFRA 671


>gi|239625849|ref|ZP_04668880.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520079|gb|EEQ59945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 616

 Score =  359 bits (921), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 179/438 (40%), Gaps = 11/438 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A +D LTG+    +F +     LD      + +   +  D   +K INDV G
Sbjct: 183 TNQKLNDLARRDTLTGVYQLDAFKEEAQRYLD---AGHDGKIAFVYTDFSDFKYINDVFG 239

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD +L      +  L+   ++  R+S + F ++L  ++     A    A  + I   
Sbjct: 240 YAYGDSILKRYGEILNRLVGEGELCGRVSADNFVLLLRYQDREEVAARQREADTEIIRFM 299

Query: 645 IN-LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +    + +     I         +     L  A  A    K  G +    F   S R+ 
Sbjct: 300 HSSHNRQSVPTCCGICCVEDVVEDLRIDGFLDRANFARKTVK-NGTHSNYVFYDESIRNR 358

Query: 704 RVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 ++  +  A+EN E  + Y P + L   +I   E+L++W       I    F+ +
Sbjct: 359 LREEKNVESSMLAALENHEFTVFYQPKVELGTGKIACSESLVRWKSQSGSIIPPDRFIPV 418

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   MI  ++ ++ E + R +           + + +N++     D    +    + + 
Sbjct: 419 FERKYMIDRLDQYVFEEVCRFLNGRLKAGRRV-LPVSVNVSRLQFFDQNFVKRYVEIRNH 477

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  +++ F+ES+ + N      ++ +L++ G S ++DDFG   S LS L  +P D 
Sbjct: 478 YQIPAELLEIEFTESIAIDNTSLLTSIVDQLKQAGFSCSIDDFGKGYSSLSLLKTLPIDV 537

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +    + S   E+ +A+++ I+ +        +A+ +  E  ++ L ++GCDY+Q  
Sbjct: 538 LKIDRFFFSESNDPERDMAVVQGIVELVHKFNIRTVAEGVESESQVEMLKQIGCDYVQGY 597

Query: 939 HVASPLGFNSILKLLKER 956
               P+      ++L  +
Sbjct: 598 VFYRPVPQAEFERMLDGQ 615


>gi|152964059|ref|YP_001359843.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358576|gb|ABS01579.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 736

 Score =  359 bits (921), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 128/731 (17%), Positives = 260/731 (35%), Gaps = 66/731 (9%)

Query: 242 LVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF 301
           ++ + S    +    S   L+ + +      L       +     +   A    L  +  
Sbjct: 19  VLAVGSAFAPVGATASAGLLAVAHLT-AVAVLALGAR-RRADDGVWRSFAVAGALVGVPP 76

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI-----PAWILIFIWFIGLWM 356
              +VT   +   L   ++    F+    ++       +        WI   +   G  +
Sbjct: 77  VLALVTGGRSLTPLGGCLVVAMPFLYQALVRWNRYRTYVSDPGDWLNWISAVLACAGAGL 136

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
            +  R+   +        + L +++ G  +I    A      G      R  L V   G 
Sbjct: 137 LVQDRVPF-LPAAWPSWMVQLWLLVFGSLLILLGTAVTVAWIGGLLRDRRVWLVVGALG- 194

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN-------DRDNFRTILD 469
                         +    T+ G  + ++HG     L ++ I                  
Sbjct: 195 ---------ALTVVS---GTLRGDPADALHGQAAWTLAFLVIAFASTRGGRHAPVPATSQ 242

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +        L     V   D      +          G  +R + +  ++      L   
Sbjct: 243 APAIGALVVLALAVGVLVVDGHEAGWVATAYAGVAVLGVSVRVVHLVREL----AQLAES 298

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR++ L  L  ++      D     ++++D+D++K++ND  G   GD
Sbjct: 299 RQQALTDELTGVGNRRALLRVLGGLVA-----DGRSAALLLLDVDRFKEVNDRQGHHAGD 353

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           D+L  +       L    +L R  G+ F ++L   + +  +          +A       
Sbjct: 354 DLLRRVVAATRRALPADAVLTRTGGDEFAVVLPDRDEASAVEVARAVHAAVVAD------ 407

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI-- 707
               +  S+G  S  +       +L+ A+ AMY AK  GG           R        
Sbjct: 408 --AEIGLSVGVRSLPAGGFDPDRLLRQADTAMYAAKTAGGGVSVYDVDVDARLRDRAALA 465

Query: 708 ----------KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                     +E L       E+ + Y P + +    +VG EAL++W HP+ G +    F
Sbjct: 466 ADLKALVAAGEERLRR-----EVVVHYQPQLDVGTGRVVGAEALVRWQHPQRGLLPPVAF 520

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + EE  ++  +   +L R + D   W  +    P+ I +N+++  L    L   +  +
Sbjct: 521 LDLVEEQGLMDDLTEHLLHRASADAAGWSHRG--SPLRISVNLSASSLTHPGLLGLVDDV 578

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + ++  +  R+ L  +E+ +M +P+ +  +   L + G+ L++DD+GT  S L+YL  +P
Sbjct: 579 LERSGLAAGRLVLEVTETTLMADPDLALAVTRELTRRGVQLSIDDYGTGYSSLAYLTDLP 638

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + +      +  +   I+ + + +A  +   ++A+ +  E     L  +  D  
Sbjct: 639 ATELKLDRAFTARVLAEPRTAEIVEATVALAHRLGLRVVAEGVEDESTRAALGGLDVDES 698

Query: 936 QDSHVASPLGF 946
           Q    + PL  
Sbjct: 699 QGYLHSRPLPP 709


>gi|91224732|ref|ZP_01259992.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           12G01]
 gi|91190278|gb|EAS76547.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           12G01]
          Length = 786

 Score =  359 bits (921), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/462 (23%), Positives = 194/462 (41%), Gaps = 19/462 (4%)

Query: 506 NGDILRYIGIANDITEQKK-SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           N +I R      D+ E+     +     A  D+LT + NR  F +  T  L       + 
Sbjct: 312 NDEIGRLSARFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHELATREL----ISPSQ 367

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRF 617
              V+ +D+D +K +ND  G  +GD++L   +  I    +        P   ARLSG+ F
Sbjct: 368 FLWVVYVDLDNFKYVNDKYGHELGDNLLKVFSSHIKNACQKFSHDYNSPCFAARLSGDEF 427

Query: 618 GIILISENNSLKIADF-AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            I+L S     ++ D  A  + K I+   +       VTAS+G A +       +++L +
Sbjct: 428 AILLSSNQEVKRLPDLLASELLKPISNLSSSWSNSFPVTASVGIAQYPQDGTDIAKLLSS 487

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N    +    +     R  ++  L  +    E +LV+ P +     E
Sbjct: 488 ADAAMYQAKRAGKNQYAYYSAALNIESQRRSQLERALRKSNVEEEFHLVFQPYMNNRSNE 547

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I GLE L++W+    G I   EF+ IAE+  +   I+ ++      +    R+      I
Sbjct: 548 IEGLEVLLRWEAEGIGPIPPKEFIPIAEQAGLFDKIDRWVFANATAEYHQLRNIFGK-DI 606

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++S +L   E+   +    +     P  I++  +E+        +   L  L K 
Sbjct: 607 VLSVNLSSAELNSIEMANYIHEQATLHSVKPECIEIEITETFAAEQQGTAL--LDELSKR 664

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTI 913
           G  L +DDFG+  + L+ L   P   +KF+    +T        +++ II +      T+
Sbjct: 665 GYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLVTLMNTNNGHVIKPIIELCHAQNKTV 724

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ I   +  + L+   CDY+Q      P+    +    + 
Sbjct: 725 TAEGIEHNMMHEWLSAYRCDYMQGYLFGKPMTKEQLSLWWQS 766


>gi|319787130|ref|YP_004146605.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465642|gb|ADV27374.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 574

 Score =  359 bits (921), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 102/408 (25%), Positives = 171/408 (41%), Gaps = 4/408 (0%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L   A D       + +DID +  +N+ +   VGD  L  L RR+  LL+    +   
Sbjct: 27  QALVAQARDGGPPLMALHLDIDHFASVNENMSFEVGDQALEELGRRLHALLQGRGHVWYH 86

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             + F  ++            A  + +    P+ +L   + ++   G A        +  
Sbjct: 87  GSDEFVAVIPLLPGMPAPEQLAEELLREAEAPLGVLPYTLFLSTKAGVAMCPQQATDADG 146

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-LCLAVENSELYLVYHPIIRLM 731
           +L+ AE+A   A H G         S        +    +  AV N EL L + P I   
Sbjct: 147 LLRLAEIAARQASHVGERIQFYGGASLQTVHNESLIARQIVDAVPNGELRLRFQPEISAR 206

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D  +VG+EAL++W  P  G +    FM +AE L +I  I  ++L         WRD    
Sbjct: 207 DGRVVGMEALLRWQSPTLGLLVPERFMPVAERLGVIVQIGEWVLRNAIAQARVWRDAGFD 266

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             +F+ +N+++  LL     + +  ++ +    P  + +  +ES +  +       L  L
Sbjct: 267 -DLFVAVNVSTLQLLRPAFVDEVLGMLRQAGLPPESLLIEINESTLAASVTPVYDGLAAL 325

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNI 909
           R+ G+ L LD+FGT  S LS L   P D +K + S +    + E+  AI+R+II M   +
Sbjct: 326 RREGVRLALDNFGTGDSSLSALVRYPVDMLKIDRSFIRSAPAGERETAIVRAIIAMGHQL 385

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +IA  +  E  +  L R  CD  Q      P+   S   +L+ R+
Sbjct: 386 NMKVIANGVESEAQLGYLRRSDCDLFQGYLFGEPMPAESAGMVLRRRY 433


>gi|238797672|ref|ZP_04641168.1| Diguanylate cyclase/phosphodiesterase [Yersinia mollaretii ATCC
           43969]
 gi|238718536|gb|EEQ10356.1| Diguanylate cyclase/phosphodiesterase [Yersinia mollaretii ATCC
           43969]
          Length = 656

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 98/440 (22%), Positives = 204/440 (46%), Gaps = 18/440 (4%)

Query: 524 KSLEGILCNAFQD--------NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              + +L  A+ D         +T +PNR  F+  L   +     ++     ++VI I+ 
Sbjct: 215 NRNQQLLAEAYTDMSRISTRFPVTELPNRSLFMHLLEQEISGGMRNEKFH--LLVIGIET 272

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            ++++ V+       +L+++ +R+ + +    +LA+LS   F ++    +        A 
Sbjct: 273 LQEVSGVMSEEQHRQLLLTMAQRLEQCIDENSLLAQLSKTEFAVLARGISRPFPAMQLAR 332

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            M   +  P+     ++  +ASIG A + S   T+  +++NA  AM  A H+G N +  F
Sbjct: 333 QMMLQMTQPLLFGNIQLRPSASIGIADYQSQGETAESLMRNASTAMMAAHHQGRNQIFVF 392

Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   +  +  + D+  A+EN +  L   P   + ++ ++G EAL++W  P     S
Sbjct: 393 EPHLTEKTQKRLTHENDILQAIENRDFTLFLQPQWNMQEKRVIGAEALLRWRQPDGSYRS 452

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            SEF+  AEE  M+  +  ++LE   R +  W+ Q     + + +NI+   +  ++    
Sbjct: 453 PSEFVPGAEEGGMMMPLGNWVLEESCRILADWKTQGIT--LSLAVNISGLQVQSDQFLPH 510

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q+LI++    P ++ L  +E+  + + + +  LL  L+ +G+S+ LDDFG   S L YL
Sbjct: 511 LQSLINQYQIDPRKLLLEITETARIQDLDEALTLLRELQGLGLSIALDDFGMGYSSLHYL 570

Query: 874 GY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            +   +P + +K + S +    E   A+ R +  +++ ++  ++A+ +  +   + L + 
Sbjct: 571 NHLKGLPINMIKLDKSFVKHLPEDD-AMARIVSAISEVLKLRVMAEGVETDEQRQWLLKH 629

Query: 931 GCDYIQDSHVASPLGFNSIL 950
           G    Q    + PL      
Sbjct: 630 GIQCGQGYLFSEPLAREVFE 649


>gi|148360207|ref|YP_001251414.1| GGDEF/EAL domain-containing sensory box protein [Legionella
           pneumophila str. Corby]
 gi|148281980|gb|ABQ56068.1| sensory box protein (GGDEF domain/EAL domain) [Legionella
           pneumophila str. Corby]
          Length = 794

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 112/555 (20%), Positives = 237/555 (42%), Gaps = 18/555 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILD 469
           +  + + +   D     +        + G     + G        +H   + + F   L 
Sbjct: 119 ISSAFEGIIIIDPEGTIIEANNAFMKMTGYTEKEIIGQKPV---LLHSRKQNEKFYKELW 175

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + +  + GR   E   +  + +     + I  + NS+GD++ YIG  +D+T  KK  + I
Sbjct: 176 NILMAK-GRWSGELWAKKKNKRLFPAFLAISAVKNSDGDVINYIGYYHDLTLIKKQEQQI 234

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI--AV 587
               + D LTG+PN+     RL  +++  +  +N    +  I I      N +L     +
Sbjct: 235 ESFKYYDYLTGLPNKLLLTQRLQMLINRLSE-ENKELIIFNIRIFDSSSKNSLLDFLPNI 293

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +++ + +RI          +R+  + F ++   +     +A  A  M + ++ P ++
Sbjct: 294 RDKIILEVVKRIDRTSPKKMFFSRIGLSEFIVVYFIKCRIEVMASIAQRMIEKLSCPYHI 353

Query: 648 LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS---D 703
             + I +   IG  ++  +   ++ + L+ +E+A + A+ +G N  E F           
Sbjct: 354 GHKTIILQTIIGLTAYYKNTAFSAEDFLQQSEVARHKAQIKGINIFEFFDPQVEERIIEF 413

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  +  A++ +EL + Y PI+ L   E+  LEAL++W HPK G +   +F+   + 
Sbjct: 414 NKRIES-VSKAIQLNELKIYYQPIVELSKAEVASLEALLRWKHPKKGLLLPKQFLSDIDN 472

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL- 822
             +   +  ++L ++   I           I I IN+++  L      + +   ++    
Sbjct: 473 HPLSLQLGDWVLHQVLEQIEKLLACG--IKIPIHINVSAYQLQHPNFVKKLFDTLALYPS 530

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I L   E+  + +      ++   +  G++ +LDDFGT  + L++L  +    VK
Sbjct: 531 VPPHLIMLEVLETEAIEDLILVSQIIAECKTKGVNFSLDDFGTGYASLTFLKELNTTEVK 590

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +       K + +L+++I   + I  T++A+ +      K L+  GC+ IQ   +
Sbjct: 591 IDRSFIIDIFDNPKELVLLKTMIEFCRVIGRTLVAEGVETVAHGKLLSLFGCNLIQGYAI 650

Query: 941 ASPLGFNSILKLLKE 955
           A P+    ++  +K 
Sbjct: 651 AKPIPATKLIPWIKN 665


>gi|84385266|ref|ZP_00988298.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84379863|gb|EAP96714.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 612

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 201/457 (43%), Gaps = 21/457 (4%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ND +EQ   +  +      D+LTG+ NR    D L +I       ++   T+ ++DI+ 
Sbjct: 166 FNDRSEQ--LVNQLSYEVSHDSLTGLLNRSCLSDTLESI----TQQNSTPFTLAILDINS 219

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND+ G  VGD VL  L   +   L   ++  R +GN F  I               
Sbjct: 220 FKAINDLHGNYVGDKVLQHLAEILRRTLPENNLTFRTAGNEFAFI----TYYADPTAICE 275

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   +    N ++  I    SIG A          +++ N  LA+   K   G H++ +
Sbjct: 276 QIVAKVKQGYNSIDLRIDFDISIGIAGSAGDSKDVEQIIFNTSLALKECKQYSGTHIKCY 335

Query: 696 RVSSFRSDRV--MIKEDLCLAVENS-----ELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                   +    +   L   +ENS      +Y+V  PI+   D+     E L +W   K
Sbjct: 336 DTHLRSRYQRKTELIAALRNELENSISLNSGMYVVAQPIVGQQDKRWKYFEVLTRWKTEK 395

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G+IS  EF+ +AEE  +I  +   ++E + R   +  +Q     + + IN ++ +L D+
Sbjct: 396 HGDISPVEFIQVAEESGLIVELGERIIELVCR-AKTTLEQGLGYKVKLGINCSAHELTDS 454

Query: 809 -ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                 +   I +  +      +  +E+V++   + ++  L  LR+ G ++ LDDFGT  
Sbjct: 455 KRYISYLTRTIEQHHFKADEFVIELTETVLLSPTQDTKDALNFLREQGFTIALDDFGTGY 514

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+Y+   P D +K +   +          +++  II +A  +  +++A+ +     ++
Sbjct: 515 SSLNYIHSYPIDCIKIDAIFIQNLLTNSTSESVVWLIIQLAHRLNVSLVAEGVEKREQLE 574

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +L  MGCD IQ    + P+   +I+ L+     L+++
Sbjct: 575 KLHDMGCDKIQGYLYSPPMRPEAIVSLVTHSEALIQS 611


>gi|225419790|ref|ZP_03762093.1| hypothetical protein CLOSTASPAR_06128 [Clostridium asparagiforme
           DSM 15981]
 gi|225041573|gb|EEG51819.1| hypothetical protein CLOSTASPAR_06128 [Clostridium asparagiforme
           DSM 15981]
          Length = 1401

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 191/428 (44%), Gaps = 14/428 (3%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
           +L  A  D LTG+  +  F  R+  IL L     +    ++  +I+ +K +ND+ GI  G
Sbjct: 160 MLSLAQYDQLTGLYTKTFFYQRVKEILVL---HPDRPYDLLYSNIENFKLVNDISGIPAG 216

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L  + + + E +    I  R+  + F  +L       +       + +     I  +
Sbjct: 217 DMLLCKIAQMLSERVNPWGICGRIDADHFACLLERRWEYSQA------LFQRAEAEIREV 270

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVM 706
                V    G  +     I+  +M   A LA    K R G +  ++  +          
Sbjct: 271 TNMKNVVIRWGVYAIDDRSISVEQMCDRALLAANRIKGRYGKYYAAYDEALRSKLLREQA 330

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I + +  A+   +  L   P  R+ DE + G EAL++W+HP+ G +   EF+ + E+   
Sbjct: 331 ITDSMEAALAGEQFVLYVQPKYRVRDESLSGAEALVRWNHPELGFLPPGEFIALFEKNGF 390

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++ E     +  W D    P I + +N++  D+ + +L   +  L+++    PS
Sbjct: 391 ITRLDQYVWEHTCAVLHDW-DLRGYPQIPVSVNVSRADIYNIDLAAVLVKLVNQYELEPS 449

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ L  +ES    NP +    +  +R++G  + +DDFG+  S L+ L  +P D +K +  
Sbjct: 450 RLHLEITESSYTENPRQIIDTVDEMRRLGFIIEMDDFGSGYSSLNMLNKMPLDVLKLDMK 509

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                +++     IL  I+ +A+ ++  ++A+ +     ++ L  +GCD++Q  + A P+
Sbjct: 510 FFQNESDRSVNRGILLFIMQLARWMQVDVVAEGVETREQVELLREIGCDFVQGYYYAKPM 569

Query: 945 GFNSILKL 952
                  L
Sbjct: 570 PCEEFEAL 577


>gi|310658355|ref|YP_003936076.1| hypothetical protein CLOST_1048 [Clostridium sticklandii DSM 519]
 gi|308825133|emb|CBH21171.1| protein of unknown function [Clostridium sticklandii]
          Length = 823

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 111/584 (19%), Positives = 225/584 (38%), Gaps = 23/584 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLA 441
             +IQ +     F   +      +S+ +     + +  +   D      +     + G  
Sbjct: 250 ICLIQDITQRKSFENALIESERSKSVLLSHLPGLAYRCNYDDDWTMQFVSEGCYELTGYK 309

Query: 442 SGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           + S+      ++   I    R+       + +  R     YE+ +  +  +  W+I    
Sbjct: 310 ADSLLHNKELSYNDIISPEYREILSNEWKTVLRNR-DSFSYEYEIITSTKEKKWVIELGE 368

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + +G+I    GI  DI+ +K     +  +   D  TG+ NR    + +   L    +
Sbjct: 369 GIFDKDGNIEALEGIVIDISYRKAMENELKYSNEHDRWTGLYNRNYLEELI---LRDIKS 425

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++ I++     +N + G     +++  +   +   +    +L     NRF   
Sbjct: 426 QSKANLALVGINLSAVSSLNKMYGFQYIQELIKVIVENLNVHVTKERLLFSTYENRFVFY 485

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + +  +  ++ +F   + K++   I+       V   IG       +     + K   +A
Sbjct: 486 VNNYEDIEELKEFGECLAKTLEPYISAE----RVGVGIGILEIGYEEHNVDNLFKKLLIA 541

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA-------VENSELYLVYHPIIRLMDE 733
              A              +     VM ++++            +  LY+ Y PI  L   
Sbjct: 542 SEKAIEINDRDYWVCVYDNKLETEVMREQEIKHELTKISQLHIDGSLYIQYQPIFDLKAN 601

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           ++ G EAL + +  K G IS  EF+ IAEE  +I  I   ++ +    +           
Sbjct: 602 KVTGFEALSRINSEKLGFISPLEFIPIAEETKLIIPIGEKIISKSLDFLFRLNILGFD-D 660

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I I IN++   L   +  E +  +I +   +P  I L  +ES+   + +   ++L  L++
Sbjct: 661 IDISINLSVIQLFKKDFPEKLFKIIKEKNVNPQNIILEITESIYSSDYDYLNIILNDLKR 720

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMAKNIE 910
           IG+ +++DDFGT  S LS    +  D +K + S +      + +  AI   II MA  + 
Sbjct: 721 IGLKISIDDFGTGYSSLSRERDLNIDCLKLDKSFIDKLMYLSPE-EAITGDIISMAHKLG 779

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +++A+ +  E  +  L    CD IQ   ++ PL     ++ LK
Sbjct: 780 HSVVAEGVEHEKQMNYLKSSDCDRIQGYFISRPLDEEKAIEFLK 823



 Score = 62.3 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 9/144 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW------DIVRDR-VTTTPDIATILG 439
            Q +       Q +   G    L +  +   +         +I RD     +P    I G
Sbjct: 119 AQLLKTQRILEQQLQEQGLTLDLIINQAPIGIAISYSSDLNNIWRDEYCIFSPMFLNITG 178

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   +      W    H +D D+     +            + R+   D    W+ + +
Sbjct: 179 RSRHELI--SLGWENISHPDDLDDELVYNNKLRTGELESYTIDKRIIKPDGSVVWVHLIM 236

Query: 500 RPMSNSNGDILRYIGIANDITEQK 523
             +  S       I +  DIT++K
Sbjct: 237 SNIYLSPERPCNQICLIQDITQRK 260


>gi|296106739|ref|YP_003618439.1| sensory box protein (GGDEF domain/EAL domain) [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295648640|gb|ADG24487.1| sensory box protein (GGDEF domain/EAL domain) [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 794

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/555 (20%), Positives = 238/555 (42%), Gaps = 18/555 (3%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILD 469
           +  + + +   D     +        + G     + G        +H   + + F   L 
Sbjct: 119 ISSAFEGIIIIDPEGTIIEANNAFMKMTGYTEKEIIGQKPV---LLHSRKQNEKFYKELW 175

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + +  + GR   E   +  + +     + I  + NS+GD++ YIG  +D+T  KK  + I
Sbjct: 176 NILMAK-GRWSGELWAKKKNKRLFPAFLAISAVKNSDGDVINYIGYYHDLTLIKKQEQQI 234

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI--AV 587
               + D LTG+PN+     RL  +++  +  +N    +  I I      N +L     +
Sbjct: 235 ESFKYYDYLTGLPNKLLLTQRLQMLINRLSE-ENKELIIFNIRIFDSSSKNSLLDFLPNI 293

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D +++ + +RI          +R+  + F ++   +     +A  A  M + ++ P ++
Sbjct: 294 RDKIILEVVKRIDRTSPKKMFFSRIGLSEFIVVYFIKCRIEVMASIAQRMIEKLSCPYHI 353

Query: 648 LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS---D 703
             + I +   IG  ++  +   ++ + L+ +E+A + A+ RG N  E F           
Sbjct: 354 GHKTIILQTIIGLTAYYKNTAFSAEDFLQQSEVARHKAQIRGINIFEFFDPQVEERIIEF 413

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I+  +  A++ +EL + Y PI+ L   E+ GLEAL++W HPK G +   +F+   + 
Sbjct: 414 NKRIES-VSKAIQLNELKIYYQPIVELSTAEVAGLEALLRWKHPKKGLLLPKQFLSDIDN 472

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL- 822
             +   +  ++L ++   I           I I IN+++  L      + +   ++    
Sbjct: 473 HPLSLQLGDWVLHQVLEQIEKLLACG--IKIPIHINVSAYQLQHPNFVKKLFDTLALYPS 530

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  I L   E+  + +      ++   +  G++ +LDDFGT  + L++L  +    VK
Sbjct: 531 VPPHLIMLEVLETQAIEDLILVSQIIAECKTKGVNFSLDDFGTGYASLTFLKELNTTEVK 590

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +       K + IL+++I   + I  T++A+ +      K L+  GC+ IQ   +
Sbjct: 591 IDRSFIIDIFDNLKELVILKTMIEFCRVIGRTLVAEGVETIAHGKLLSLFGCNLIQGYAI 650

Query: 941 ASPLGFNSILKLLKE 955
           A P+    ++  +K 
Sbjct: 651 AKPIPATKLIPWIKN 665


>gi|254735507|ref|ZP_05193215.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
          Length = 339

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 167/335 (49%), Gaps = 5/335 (1%)

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +    A  A  +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK
Sbjct: 3   SEKSAAFIAEQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAK 62

Query: 686 HRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G N    F      +      ++ +L  A++ +E +L Y P +    ++I+G EALI+
Sbjct: 63  ANGKNRFVFFSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKTKQIIGFEALIR 122

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++  
Sbjct: 123 WKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKRWHNQ-GFSHLKVGVNLSVV 181

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                +L   +  ++ +T   P  + +  +ES+ +   +     L +L+ +GI +++DDF
Sbjct: 182 QFNHADLIPTISKVLEETELKPEALDIEITESIAINQNQSVVAKLEQLQNLGIQISIDDF 241

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ +  E
Sbjct: 242 GTGYSSLAYLTKYPINTLKIAREFICGITTSPLEEAIISSIITLSKELNLEVIAEGVETE 301

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              K L    CD+IQ   ++ P+    + +LL ++
Sbjct: 302 EQWKFLYEQNCDHIQGFFISKPVSSKDVWRLLHKK 336


>gi|303327955|ref|ZP_07358394.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861781|gb|EFL84716.1| sensory box/GGDEF family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 749

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/439 (22%), Positives = 187/439 (42%), Gaps = 11/439 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     I   AF D LTGI N   F     T+L         R  V+ +DI  ++ +N+V
Sbjct: 311 RGYQREIRALAFTDTLTGIRNFAKFKIDGDTLLQTP---GAPRYAVLALDILNFQVVNEV 367

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG  +GD +L  L   +GE  +   + AR+SG+ F ++L  +    ++  +  A+ +++ 
Sbjct: 368 LGYNIGDALLQRLALLLGESARPGALTARVSGDHFVVLLPYDK-KQELTAYCDALLRALN 426

Query: 643 MPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             +        I +   I  A    +    +++L  A +A+   K +G      +     
Sbjct: 427 GYVRSQAGSYHIELRTGICCAEDGDAATGINDLLDRANIALKAIKAKGAPPWNFYDSGMR 486

Query: 701 RSDRVMIKEDLC--LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  + ++    A+ + E  +   P  RL   E+ G EAL++W  P  G +  +EF+
Sbjct: 487 VRILREKELEMRMGQALRDEEFQVHIQPKYRLDSLELAGGEALVRWQSPDHGFLPPAEFI 546

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++ ++   + R +  W D     P  + +N++          E    + 
Sbjct: 547 PLFEKNRFIIQLDQYVFTTVCRLLRQWLDAGLA-PCPLAVNVSRVQFYTLGFVETYIGIK 605

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       ++L F+ES+ + N E  R  +  LR+ G S  +DDFG   S L+ L  +P 
Sbjct: 606 KQYDIPDGLLELEFTESIFIENVELLRTAVQELRQAGFSCAIDDFGAGYSSLNILKDLPV 665

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +G+         +   ++++I+ MA  ++   +A+ +     +  L    CD +Q
Sbjct: 666 DVLKLDGAFFRSLKSNGRDKVVIQNIVHMAGELQMATVAEGVETLEQVNFLKDTNCDMVQ 725

Query: 937 DSHVASPLGFNSILKLLKE 955
               A P+      + L+ 
Sbjct: 726 GYVFARPMPAEKFTERLRN 744


>gi|109896587|ref|YP_659842.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109698868|gb|ABG38788.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 778

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 103/438 (23%), Positives = 198/438 (45%), Gaps = 19/438 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +   E I   A  D LTG+ NR +        L  +   +N    V+ I++  ++ I
Sbjct: 340 SNIRHREEKISYQAQHDILTGLNNRYNM-----EALLCAKFKENKPFQVLGINVFGFRSI 394

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           NDV G   GD  L  L  R+ E      I ARL+G     +     +  ++  F      
Sbjct: 395 NDVFGYHNGDICLQILANRLLEH---GGIGARLAGGELLWVPDEHLSQKQVVQF----IN 447

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVS 698
           S+  PI+  +  I    SIG  +  +    + E+ +   +A+   K              
Sbjct: 448 SLEQPIDTGDSSIMAKLSIGMLNCPNDATNAEELFRRINIALDETKLSDQPILAYQPEFE 507

Query: 699 SFRSDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                R+ I  +L  A   +  EL L Y P + L   ++  +EALI+W++   G +S  +
Sbjct: 508 HRYLRRLSIIAELKTALQEQQDELSLFYQPKLDLDTGKVTKVEALIRWNNAILGFVSPED 567

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+   I  I  +++ +  +D ++ R+      + I IN+++KD++D  L   + +
Sbjct: 568 FISVAEQAGFIGKITDWVINQAIKDAVALRNAGIE--MSIAINLSAKDVMDQALLPHISS 625

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+  +  S   +    +ES ++  P ++   L   R  G  + +DDFGT  S ++YL Y+
Sbjct: 626 LMEASQLSSKALSFEMTESDLVQEPAKAIQQLQAFRDKGFEIAIDDFGTGYSSMAYLQYL 685

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P  T+K + S +      +    I++++I +A +    ++A+ I  +  +  L + GC++
Sbjct: 686 PVTTLKVDKSFVLSLDSQQGDQKIVQTVIDLAHSFGLNVVAEGIESQATLLLLKKWGCEF 745

Query: 935 IQDSHVASPLGFNSILKL 952
            Q  ++  P+ F+ ++  
Sbjct: 746 AQGYYMCKPIPFDDLITW 763


>gi|90416536|ref|ZP_01224467.1| hypothetical protein GB2207_05022 [marine gamma proteobacterium
           HTCC2207]
 gi|90331735|gb|EAS46963.1| hypothetical protein GB2207_05022 [marine gamma proteobacterium
           HTCC2207]
          Length = 314

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 166/306 (54%), Gaps = 5/306 (1%)

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMI 707
           ++++ VT SIG + +       S ++K+A+ AM+  K  R         + +  + R+ +
Sbjct: 2   QQKMFVTTSIGISIFPDDGEDVSALIKHADSAMFRTKEKRDDFCFYERGMEAEIAKRLKL 61

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +++L  A+++ +L L Y P I     +++G EAL++W+HP  G +S  +F+ +AEE  +I
Sbjct: 62  EQELRKAIDSDQLVLHYQPQIDFKTGDLLGAEALVRWEHPLKGLVSPDDFIPLAEESGLI 121

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++L+ +A     W D+     + + +N++ KDL+  +    ++ LI ++   P  
Sbjct: 122 NQLTDWVLKNVAVQTKRWLDEGY--SLRLAVNLSVKDLMQEDFHTKLEDLIKRSDLPPDV 179

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES +M +PE     L +++K+GI++ +DDFG+  S L+YL  +P D +K + S 
Sbjct: 180 LELEITESTLMDHPELMIKELNKIKKMGITVAVDDFGSGYSSLNYLKKLPVDVLKIDRSF 239

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++         AI+  II +AKN+  + +A+ +  E   K L ++GCD  Q   V+ P+ 
Sbjct: 240 ISDIESDPNDSAIVAGIIALAKNLGMSTVAEGVETEAQRKILEQLGCDTFQGYLVSKPVP 299

Query: 946 FNSILK 951
                +
Sbjct: 300 PQLFTE 305


>gi|114564759|ref|YP_752273.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           frigidimarina NCIMB 400]
 gi|114336052|gb|ABI73434.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           frigidimarina NCIMB 400]
          Length = 620

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 207/442 (46%), Gaps = 10/442 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I  +  + + +      D +TG+P           +      ++    +V+   I  
Sbjct: 172 MQEIDSRIAAEKLLDIQQRFDTVTGLPKFNQLETMFNQLTTK---NEFTSISVVHFSITN 228

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN--SLKIADF 633
            K I D LG  + + V   + +++   +     LA +S   F I++ ++    + K+A F
Sbjct: 229 LKVIQDGLGYDMSEKVRNLVAQKLQRFITNNAYLATVSETTFCIVISTKKQLYADKMAAF 288

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNH 691
              + +  A  I++ +   ++T +IG + + +      E+ + +  A+ H +  +  G  
Sbjct: 289 CSRLCQHFAQVIHVDDFPASITTAIGVSFYPNDGSCFMELSRKSSAALSHCEISNNNGYK 348

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             + ++ S  S+R+ ++  L  A+   EL L Y P +    + ++G E LI+W +P  G 
Sbjct: 349 FFNPKMESELSNRIQMESLLRGALSRDELSLNYQPFVDTQSQNVIGAEVLIRWYNPTLGQ 408

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S  +F+  AE+   I  I  F+L    + +  WR+  N    ++ INI+   L D+ L 
Sbjct: 409 VSPVDFIENAEQSGQIIEIGYFVLRNALKQLAYWRELYNR-DFYLAINISPVQLKDSYLI 467

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+       + +++  +E+  + +   ++ +L +L   GI L+LDDFGT  S LS
Sbjct: 468 DKIVQLLELYKIPGNLLEIELTENAFIHDATHAQEILNKLHHHGIRLSLDDFGTGYSSLS 527

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL   PF++VK + S +     +E+   ++ +II MA N++ +++A+ +  +     + +
Sbjct: 528 YLQNYPFNSVKIDRSFIRNLETSEQSRQLVNTIIAMANNLQLSLVAEGVENQFQADFVAK 587

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            G +  Q  H+  P+  N   +
Sbjct: 588 QGANIWQGYHLGKPVDANDFAQ 609


>gi|145295180|ref|YP_001138001.1| hypothetical protein cgR_1122 [Corynebacterium glutamicum R]
 gi|140845100|dbj|BAF54099.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1014

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 93/560 (16%), Positives = 220/560 (39%), Gaps = 16/560 (2%)

Query: 398  QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            Q +    E   L    +   +   +   + V        ++G     + G          
Sbjct: 453  QQLTLAYEESRLLFENAPQGIAMLEPSGEIVIANRSFGDLVGTTPVRLLGRNLEDFGV-- 510

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                +     + + +      +  +  +     +   + +    M N  G I   +    
Sbjct: 511  ---EEGTMEYVTTVLLDPEAVVHLDRSLETLRGKQKNVAMSFSSMGNVGGRIGTLLVNVV 567

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            D+TE+++ +E +   A  D+LTG+ NR+     +  ++  +   ++    ++++D+D +K
Sbjct: 568  DVTERQELIELVEHLADHDSLTGLVNRRRLESNIEELILKNER-ESTESALLLLDLDYFK 626

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ++ND LG   GD +L+     + + ++  D++ R+ G+ F I+L    +        I +
Sbjct: 627  EVNDSLGHKAGDQLLIEFAEILKDSVRDSDVVGRIGGDEFVIVLPH-TDRDGAEAIGIRI 685

Query: 638  RKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             + +        + +  V+ SIG + ++ ++         A+  +Y AKH G N V   R
Sbjct: 686  IELVNQHFKGRGKVLSRVSVSIGVSLFSDARAQGVNPFILADQLLYDAKHAGRNRVAVRR 745

Query: 697  VSSFRSDRVMIK---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +            E+L   +E+  + L   PI+ L    +   E L++ +     ++ 
Sbjct: 746  AENTIVRSAKPAFSVEELPEILESHSIRLELQPILELETGRVDAAEGLLRINL-DGTDVP 804

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              +F+   E+  +   +++ ++    + I   R     P   + +N++   L   ++ E 
Sbjct: 805  PGQFIQSVEQAGLAPKLDIAVMREGIKHIERLRAVC--PTFSLALNLSGYSLSSAKMREE 862

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++A           I+   +E+  + + + ++  +  L+  G  + +DDFG       YL
Sbjct: 863  LRAEFRAHDLPRESIRFEITETAPIEDIDAAKEFMQMLKDFGFHIAIDDFGAGHEPYQYL 922

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                F  +K  G  + G        +I+ SI  +AK+ E   +A+ +  +  ++ +  +G
Sbjct: 923  KKFDFSVLKIAGEFIEGMVTNRVDRSIVESIAQLAKDEEMETVAEFVSSKEILEAVREIG 982

Query: 932  CDYIQDSHVASPLGFNSILK 951
              Y Q  ++      +  + 
Sbjct: 983  VTYAQGFYIGKSKPIDEFIA 1002


>gi|94500135|ref|ZP_01306669.1| putative HAMP domain/GGDEF domain/EAL domain protein [Oceanobacter
           sp. RED65]
 gi|94427708|gb|EAT12684.1| putative HAMP domain/GGDEF domain/EAL domain protein [Oceanobacter
           sp. RED65]
          Length = 781

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 97/457 (21%), Positives = 211/457 (46%), Gaps = 23/457 (5%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +  +  +I+E+      I+  A  D LTG+ NR +    L + +      ++    ++ I
Sbjct: 332 FFNMGQEISER---ESEIIYQAKHDLLTGLLNRHTLQKELDSSV-----HESEHLVLIGI 383

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-------LARLSGNRFGIILISE 624
           DI  +K++ND +G  VGD++L+SL  R+ EL++            AR+S + F +++++ 
Sbjct: 384 DIKSFKQLNDTMGPRVGDEILISLASRLNELVESHVSYHKSYANAARISND-FFLLVVTL 442

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +   ++  +   +R+ +     +    I      G    T +      +L+  E+A+  A
Sbjct: 443 SQIDEVDVYCQTVRQKLIKSYEIDSMIINFDLYCGVVIDTDNADQGETLLRRVEIAVNAA 502

Query: 685 KHRGGNHVESFRVSSFRSDRV-MIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEAL 741
           K                      I E+L    A +N  +++ + P + L  E+I  +EAL
Sbjct: 503 KDEYTAIRYYETGEDEAYLERISIIENLKDTLASDNGSMFMTFQPKLNLKTEKIDKVEAL 562

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W +     ++   F+ +AE+  +I  +  +++  + R I  W +   +  + + IN++
Sbjct: 563 IRWVNEDGDFVNPELFIDLAEKSGLIVDLTQWVVRNVVRQIADWNEAGYL--MKVAINLS 620

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++D+  +   E +   I+    S S+I L  +E  +M N  ++   L  L+ +G  +++D
Sbjct: 621 AQDIQHDGFIEFILDTIASYSVSASQITLELTERDLMENESQAINRLANLKMVGFEVSID 680

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           D+G   S LS L  +P + +K +   +     ++    I++S I +   +   ++A+ + 
Sbjct: 681 DYGIGQSSLSKLKDLPANELKIDKGFIMTLEQSDADQVIVKSTIELGHKLGMRVVAEGVE 740

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++ +  L   GCD+ Q  +++ PL  ++ +  L   
Sbjct: 741 NQMSLDILRSFGCDHAQGFYLSKPLKADAFINWLSNY 777


>gi|257790801|ref|YP_003181407.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
 gi|257474698|gb|ACV55018.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
          Length = 591

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 193/450 (42%), Gaps = 31/450 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+P+R S   R+   L           +++ +DID ++  ND  G AVGD ++  
Sbjct: 22  YDALTGLPDRTSLERRIEQRLAQKGR----PFSLIAVDIDNFRSYNDAYGYAVGDAIIAR 77

Query: 595 LTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--- 650
             R +   L    +++ R+    +  I+    +              +++ + +      
Sbjct: 78  FGRYLQTSLSTGVEMVGRVGSEEYLAIV----DGADRDVLDGLTSDLLSVRLTIDGEGPS 133

Query: 651 ----EITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                +++TA  G  SW   + +T + +++ AE+A+  AK  G +   +F        R+
Sbjct: 134 GESTSVSLTAGAGVVSWDGEAALTPAALIRQAEVALRKAKQLGRSRRYAFETDDAEFARL 193

Query: 706 M--------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    +  ++  A+E  E    + P+ R  +  IVG EAL +W HP  G +S + F
Sbjct: 194 REDMRLSMELSVEIGDALERGEFEAFFQPLFRPSNGRIVGAEALARWRHPSRGLVSPAVF 253

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E    I  ++L + E+  R +    D+  +  + +  N +    LD+   + ++ +
Sbjct: 254 IPPLERSGAIVDLDLAIFEQCCRFLRDRLDKGAVI-VPLNCNFSRLHFLDDSFADALKGI 312

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS +    +ES  + + +     + RL + G S+ +DDFG+  S L  L  +P
Sbjct: 313 VDRYAVPPSYLCAEITESAFVEDFDTVIGQVKRLHEHGFSVAMDDFGSGYSSLGMLQNLP 372

Query: 878 FDTVKFNGSLM-TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK +        ++ +   ++ S+  +AK +   ++ + I     ++ +  +GCD  
Sbjct: 373 IDEVKIDQLFFQRDLSDFRNATVVYSMANIAKVLGLVVVCEGIETAEQVEFVKGIGCDIA 432

Query: 936 QDSHVASPLGFNSILKLLKE---RFPLVKN 962
           Q    + P+   S   LL+      P  ++
Sbjct: 433 QGFFFSRPVDEASFGGLLERALAHEPQKRS 462


>gi|313682865|ref|YP_004060603.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155725|gb|ADR34403.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 673

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 188/425 (44%), Gaps = 12/425 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   + +D LTG+ NR+ F + L+  +  S    + + TV++ID+D +K IND  G
Sbjct: 251 YYEKLQELSDRDYLTGLYNRRKFEEFLSYEVKRSLRHRH-KFTVLMIDLDNFKYINDTYG 309

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD VL  +T   G  L+  DILAR+ G+ F +IL         A          + P
Sbjct: 310 HASGDLVLKEVTEIFGSKLRNADILARIGGDEFAVILPETPYENGYAVVEKLRASLESTP 369

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
           I+L+  ++++TAS G A +         +L  ++LAMY AK  G N +     S      
Sbjct: 370 ISLMFDQVSLTASFGIAEYPEQGENIESLLTGSDLAMYKAKRAGKNTIARADQSDQEMAS 429

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +     E L  A++   +     PI  +   EI G E L +    K   +++ +F+ +AE
Sbjct: 430 EIQKKGEFLRRAIDEDRIEPFVQPIYNVRSGEIFGYEVLARIRDGKR-YMAAGQFIDVAE 488

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            L     I+  +L +        R++  +       N+++K L  +     ++    ++ 
Sbjct: 489 SLGFASKIDQIILTKGLYA----REEKGLWDKRFFFNLSTKSLFGDTYVSVIEDHYKRSP 544

Query: 823 YSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +      + +   E   + N      ++ ++++ GIS  LDDFG+  S   YL Y   D 
Sbjct: 545 HPDKNTGVTIEILEREAIHNVNGLMDIIEQMKQRGISFALDDFGSGFSSFVYLKYFDTDF 604

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +G  +      EK    ++ I  +AK      IA+ +  E  +  L  +G DY Q  
Sbjct: 605 VKIDGEFVKNIVVNEKDRIFVKHIHQIAKEFGKETIAEYVEDEETLAILKEIGVDYAQGF 664

Query: 939 HVASP 943
           H+  P
Sbjct: 665 HLGRP 669


>gi|134096143|ref|YP_001101218.1| hypothetical protein HEAR2987 [Herminiimonas arsenicoxydans]
 gi|133740046|emb|CAL63097.1| Hypothetical protein; putative EAL and GGDEF domain; putative
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 558

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 199/437 (45%), Gaps = 8/437 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  L  +   A  D +T +PNR + L  L  I        +    ++V+ +    ++   
Sbjct: 118 RSYLRHLKWIARHDPVTRLPNRHALLKALYDI--QKIKSPSHLHALVVVSLQNTTELKSA 175

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  + + V+     R   +L+    + R+   + GI++ S  ++  I     A+ KS  
Sbjct: 176 FGFDITEAVIQQSADRYQGILQDKAGVYRIDPEQLGILIES-RDAQVIDILLAALVKSAQ 234

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFR 701
            P       I V + +G+ +++         L+ AE A+  A          S  +S+F 
Sbjct: 235 QPYQFNAIPIHVDSRLGYVTFSKVIQAPELYLQRAESALTSANEKAQDCVAYSPEISNFA 294

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            + + I  +L  A+E  +L + Y P I +   EI G+EAL++W+HP+ GNI    F+  A
Sbjct: 295 KENLSILGNLMSALEEGQLSMHYQPKISIKTGEIHGVEALMRWNHPERGNIPPGIFIPRA 354

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  F LE+  + I+ WR+  N   + I +NI+ ++LL     + +  L+ + 
Sbjct: 355 EQSTLINLITEFALEQAMKQIVEWRE--NDIHLAIAVNISPRNLLQPGFSDLVLQLLQRY 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   ++L  +E  +M +   S   L RL    I++++DDFGT  S L YL  +P   +
Sbjct: 413 DVSGQFLELEVTEGALMTDIAHSISELSRLANAKITISIDDFGTGYSSLQYLHQLPISLI 472

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    + + A  I+ + + +A  +    IA+ +  +     L  +GCD  Q   
Sbjct: 473 KIDQSFVRRLPDDKGAIHIVEAAVTLAHKMGMRTIAEGVENQRAYTLLADLGCDIAQGFM 532

Query: 940 VASPLGFNSILKLLKER 956
           ++ PL    + K L + 
Sbjct: 533 ISRPLPAAELEKWLAQY 549


>gi|117919320|ref|YP_868512.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
 gi|117611652|gb|ABK47106.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. ANA-3]
          Length = 743

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 100/428 (23%), Positives = 180/428 (42%), Gaps = 13/428 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF+D L  IPNR   +  L  IL     D   +  +++IDIDK+   N V G   G+D+L
Sbjct: 322 AFEDPLLKIPNRNVLIRTLDGILKEDVRD---KFNLLLIDIDKFSDFNHVFGSEHGNDML 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + E      +++RL  ++F I+             A  + +    P       I
Sbjct: 379 KHVANSLREQFDASVLVSRLKDDKFAILGPKH------LVTAALIEQLFVAPYQQGTSCI 432

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
           TV  S        ++  +   +    +A+  AK  G   HV     +   +    + + L
Sbjct: 433 TVNISTVTLPLELAEGDAVAAITQLNMALKKAKSLGIRQHVTYQPNNDDVTSHFELLQAL 492

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            L +   ++++   P + L   E+VG+EAL +W  P    +    F+ IAE   +I  + 
Sbjct: 493 QLGITQGDIHIALQPQVSLQTGEVVGVEALARWTLPNGDKVPPLRFIPIAEATGLITQLG 552

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +  +  + + +   +A    + I +N+++      ++   + + I     +   I++ 
Sbjct: 553 EQLFVQSCQAMHAL-AEAGYQNLRIGVNLSAMQFEQEKIVNQLHSHIEAAQIASKHIEIE 611

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES+ M N E     L  LR + I + +DDFGT  S L+YL  + FD +K + S +   
Sbjct: 612 VTESIAMQNFEVINKQLKALRNMNIKVAIDDFGTGFSSLAYLSKLTFDRIKIDKSFIDNI 671

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T      AI+ SII + +  +  +IA+ +      + L   GC   Q    A P+    +
Sbjct: 672 TTDDGAAAIVDSIILLGERFKMNVIAEGVETREQARWLKDRGCHDAQGYFYAKPMPLQEL 731

Query: 950 LKLLKERF 957
           L  L    
Sbjct: 732 LVWLANYQ 739


>gi|323484427|ref|ZP_08089793.1| hypothetical protein HMPREF9474_01544 [Clostridium symbiosum
           WAL-14163]
 gi|323402205|gb|EGA94537.1| hypothetical protein HMPREF9474_01544 [Clostridium symbiosum
           WAL-14163]
          Length = 1336

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 186/427 (43%), Gaps = 16/427 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+  R  F     + L      ++    +MVIDI+ +K  N   G A GD  L+++
Sbjct: 18  DPLTGLYRRSEFFRTAESFLREI---EDKSYCLMVIDIEHFKLFNQWYGEAEGDRFLINI 74

Query: 596 TRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            + + +       I   + G+ F IIL  +            ++  I   + L  +    
Sbjct: 75  AQHLKKAQDENRGIAGYMGGDDFVIILPDDG------KMLERLQNKIMGFVKLYGKNAGF 128

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
             + G  +  +  I  S M   A +A+   K    + V  +         +  ++  ++ 
Sbjct: 129 LPAFGLYAIENKNIPVSTMYDRATVALASVKGNYAHRVCRYDSRMLEKMEEDHLLLSEVQ 188

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ N E      P   + + +IVGLE L++W+HP+ G IS  EF+ + E   +I +++L
Sbjct: 189 RALNNDEFTFYLQPQCNMTNGKIVGLETLVRWNHPERGVISPGEFIPLLESNGLIASLDL 248

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            + E +   + SW D     P+ + +N++  D+   ++ E    L++K    PS +++  
Sbjct: 249 HIWENVCIRLRSWIDS-GRKPVPVSVNVSRVDIYTIDVVECFCNLVTKYNLDPSLLEIEI 307

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--G 890
           +ES      +    ++  LR  G  + +DDFG+  S L+ L  +  D +K +   +    
Sbjct: 308 TESAYAEQYDIFTGVIENLRSAGFLVFMDDFGSGYSSLNMLNDVKVDVLKIDMKFLKMYE 367

Query: 891 STEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  R   IL +II MA+ +E  +IA+ +      + L  MGC Y Q  +   P+     
Sbjct: 368 QSPGRGTGILETIINMARFMELRMIAEGVETREQAELLLDMGCIYGQGYYFYRPMPAPQC 427

Query: 950 LKLLKER 956
             +L + 
Sbjct: 428 EVILADE 434



 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 132/338 (39%), Gaps = 35/338 (10%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT-------PDIATILGLAS-----GS 444
             Q ++   +     +  +G    DWDI  + +  +       P  A  LG          
Sbjct: 998  EQELWLVRKNMESILRQAGINSLDWDIENNILYLSQVSGLPKPAGAAELGKNVSIQVIEH 1057

Query: 445  MHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                 +NW   +    R++F   +      R    L  EF ++       W  +    + 
Sbjct: 1058 FSETAKNW-NVVSGEHREDFLRYISRVYQNRDNTGLSCEFEIQREGENRKWYRVVCETIC 1116

Query: 504  NSNGDILRYIGIANDITEQKKS-----------------LEGILCNAFQDNLTGIPNRQS 546
            +S+G  ++ +G   DIT +K +                  E +   A  D LTG+ NRQ+
Sbjct: 1117 SSSGKPVKAVGYYIDITREKNAAIESRANRKALELLREQEERLTRMAETDALTGLYNRQT 1176

Query: 547  FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             + R+ + L    + D     ++++D+D +K +NDV G   GD V+    +++    +  
Sbjct: 1177 AIPRIKSFLS---SMDGQTAALIMLDLDNFKLVNDVFGHVFGDSVIAGNAKKLKSFFRAD 1233

Query: 607  DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            DI+ R+ G+ F ++  +      +      M + + M      R++  + S G+A     
Sbjct: 1234 DIICRIGGDEFLVLCKNICEKD-LNRKITQMIEDMVMSCENDGRKMIFSISAGYAMAPEQ 1292

Query: 667  KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                 E+ + A++A++ AK  G      + VS  ++  
Sbjct: 1293 GTGFDELYEKADIALFAAKTGGRGTFRKYEVSMKKTRY 1330



 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 4/152 (2%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATIL 438
           I F  I         ++ +  D       +         +D+  ++V           I 
Sbjct: 437 IDFRGITAKAINRIQARELVHDDIFSETMLNNILGGFGLYDMSGNQVELLRVNEQYCKIT 496

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G ++  +    +N +  ++  DR+    I  +    R    + E R    D    WM +R
Sbjct: 497 GTSAVELEERHKNVVNDVYQEDREELFKIFGAACKDRFRGGEGELRYLKGDGSIMWMHLR 556

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              +   +G  L Y G  +DI++QK+  + + 
Sbjct: 557 AFFLREQDGHRLFY-GSVSDISQQKRKEQQLE 587



 Score = 64.2 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 428 VTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +  +     I G     +     + ++  +H +DR N    ++ ++       + E+R+ 
Sbjct: 779 IYISNRFLGIFGYTRQEIKDKFNDKFINMVHPDDRSNVIQGVE-YLKECEEVHELEYRML 837

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
             +  + W+I + R M    G      G+  D+TE  +    +      
Sbjct: 838 GKNG-YMWVIDQSRYM--EYGGKTFLQGVVLDVTETVELRNKMKLLMKH 883



 Score = 61.5 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 429 TTTPDIATILGLAS-GSMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
               ++  +LG  S   +   I    L  IH +DR+     +     Y        +R+ 
Sbjct: 642 FANYEMVKLLGYDSYDELSKAIGGLVLNTIHPDDREQVAKDI-GSEYYAGLEYTTTYRMP 700

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE----QKKSLEGILCN 532
             D  + W + + + +   +G +   +    DI+E    Q++  E     
Sbjct: 701 KKDGTWFWTLDKGKVVRAEDGRLA-IVSACTDISETMFVQQQLSERNAAL 749


>gi|262403828|ref|ZP_06080386.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262350332|gb|EEY99467.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 597

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 102/444 (22%), Positives = 193/444 (43%), Gaps = 8/444 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   L  +  D N    V+ I    
Sbjct: 151 HQEIDKRRAAEQQIEYQRSHDVGTGFLNRSALELQLEQFL--AQPDVNDELAVIHIGFAN 208

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G   +   + AR +     +IL S    L +     
Sbjct: 209 ARQLQARLGYHLWDDVLKQLRERVGPFAEAELMTARPTSTNLTLILKSSQLDLHLNQLCH 268

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +      + E ++ +   IG A    + +   ++L +A  +M   K  G      S
Sbjct: 269 KLIHAGQAQFQVEETQVHLNPYIGVALSRET-LDPQQLLSHAVSSMLACKDSGYKVFFHS 327

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +S   + R  ++  L  AV N+ L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 328 PALSDNHARRNQMENYLLQAVRNNHLSLYFQPKVSVKTQRWVGAEALLRWKHPVLGEFSN 387

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L    +    W      P   I IN++S  L ++   + +
Sbjct: 388 ETLIHMAEQNGLIFEVGHFVLRHAIKTASEWLS--ICPSFRIAINVSSVQLKNSHFVDQI 445

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L +L  IG+ L+LDDFGT  +   YL 
Sbjct: 446 RELLTLYQFPAEQLELEITESGLIVDEPTASNILNQLHSIGVKLSLDDFGTGYASFQYLK 505

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PF+ +K + S +      E    I+RS++ +AK ++  ++ + I      + +   GC
Sbjct: 506 KFPFNGIKIDKSFLEQIAHCESDQEIVRSMLHVAKKLKLNVVVEGIESVQQEQFILEHGC 565

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
              Q      P+      + L   
Sbjct: 566 YVGQGFLYGKPMPSEVFEQKLIHH 589


>gi|317488487|ref|ZP_07947038.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316912419|gb|EFV33977.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 725

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 97/450 (21%), Positives = 193/450 (42%), Gaps = 31/450 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+P+R S   R+   L           +++VIDID ++  ND  G AVGD ++  
Sbjct: 10  YDALTGLPDRTSLERRIERCLAQKGR----PFSLIVIDIDNFRSFNDAYGYAVGDAIIAR 65

Query: 595 LTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--- 650
             R +   L    +++ R+    +  I+    +              +++ + +      
Sbjct: 66  FGRYLQTSLSTGVEMVGRVGSEEYLAIV----DGADRDVLDGLTSDLLSVRLTIDGEGPS 121

Query: 651 ----EITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                +++TA  G  SW   + +T + ++  AE+A+  AK  G +   +F        R+
Sbjct: 122 GESTSVSLTAGAGVVSWDGEAALTPAALIHQAEVALRKAKQLGRSRRYAFETDDAEFARL 181

Query: 706 M--------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    +  ++  A+E  E    + P+ R  +  IVG EAL +W HP  G +S + F
Sbjct: 182 REDMRLSMELSVEIGDALERGEFEAFFQPLFRPSNGRIVGAEALARWRHPSRGLVSPAVF 241

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E    I  ++L + E+  R +    D+  +  + +  N +    LD+   + ++ +
Sbjct: 242 IPPLERSGAIVDLDLAIFEQCCRFLRDRLDKGAVI-VPLNCNFSRLHFLDDSFADTLKGI 300

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS +    +ES  + + +     + RL + G S+ +DDFG+  S L  L  +P
Sbjct: 301 VDRYAVPPSYLCAEITESAFVEDFDTVIGQVKRLHEHGFSVAMDDFGSGYSSLGMLQNLP 360

Query: 878 FDTVKFNGSLM-TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK +        ++ +   ++ S+  +AK +   ++ + I     ++ +  +GCD  
Sbjct: 361 IDEVKIDQLFFQRDLSDFRNATVVYSMANIAKVLGLVVVCEGIETAEQVEFVKGIGCDIA 420

Query: 936 QDSHVASPLGFNSILKLLKE---RFPLVKN 962
           Q    + P+   S   LL+      P  ++
Sbjct: 421 QGFFFSRPVDEASFGGLLERALAHEPQKRS 450



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 17/183 (9%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS----DGERQSL--A 410
             T  +D   +       L     ++   +    +     S         D ER     A
Sbjct: 539 VFTGDVDYQGVFYFGASCLATDAGVLLTKMKIDRVNRSGHSHRSLQMAAMDMERLDEGPA 598

Query: 411 VLG----SGDIVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDN 463
           +          +  +D+  D +       +  ILG      +G +  N    +H +D D+
Sbjct: 599 LDQFYGVVPVGIIRYDLSGDMLITYMNQAMFDILGYTKEQFYGEVGANLRMIVHPDDLDH 658

Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++  ++             +R    D     ++ R   +   +G  +   G+  D+ E 
Sbjct: 659 LYKKSVEMIETGESEPFS--YRFIRRDGSVARVLYRQCNLPGIDGRPV-TQGMYIDLDEA 715

Query: 523 KKS 525
           ++ 
Sbjct: 716 ERY 718


>gi|146343289|ref|YP_001208337.1| diguanylate cyclase domain/phosphodiesterase domain-containing
           protein [Bradyrhizobium sp. ORS278]
 gi|146196095|emb|CAL80122.1| putative signaling membrane protein containing multidomains
           (diguanylate cyclase (GGDEF)/phosphodiesterase (EAL))
           [Bradyrhizobium sp. ORS278]
          Length = 652

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 200/444 (45%), Gaps = 11/444 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +      D+LTG+ NR  F       +  +A         ++ D+D +K IND  
Sbjct: 209 EANQTLERLVRTDSLTGLANRSHF-----RAIAGAACAAGQGVAFLLFDVDHFKTINDTR 263

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL ++   +       ++  RL G+ F ++L   + + +       +  ++  
Sbjct: 264 GHDAGDRVLQTVAALLRGACGDDELPVRLGGDEFIVVLQGADVAGRAVALGERLMSALLR 323

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-- 701
           P+ +  + + V+ SIG A+     I   E+   A+ A+Y AK  G   +  F        
Sbjct: 324 PVLIAGQPLIVSCSIGVAAQQDGAIDLEELSARADAALYRAKDDGRACLRVFDARMQCAL 383

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           + +  +  +L  A+   EL++ + P + +  ++++G EAL++W HP  G I   + +  A
Sbjct: 384 TLQRRLDAELPAALARRELHVEFQPQVAMATQDVIGFEALLRWKHPSAGMIPPPDIVSAA 443

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
             L +   +  F+ ER    + +  D+     + + IN++ ++   +   + ++ +  + 
Sbjct: 444 IRLRLAGQLTEFVGERACAFLRAL-DRKKASGVRVSINVSPREFPIHSPAQTLKLVTERY 502

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI++  +E   M +P+R    L  + + G +L +DDFG   S ++ L  +  DTV
Sbjct: 503 GVDPKRIEIEVTE-EAMFDPKRCADELKLIDEHGFALAIDDFGVGHSSIANLMAVEIDTV 561

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S + G     +   ++ +I  +A  +   IIA+ +  E+D + L  +GC Y Q   
Sbjct: 562 KIDRSFIDGIAGNRRDQQLVAAITAVALPLGHRIIAEGVEREVDAECLRMLGCSYAQGWL 621

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
              P+  +  +  L +   +   T
Sbjct: 622 YGKPMKEDDAIAWLVQHRNVTATT 645


>gi|189424221|ref|YP_001951398.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
 gi|189420480|gb|ACD94878.1| diguanylate cyclase/phosphodiesterase [Geobacter lovleyi SZ]
          Length = 859

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 105/442 (23%), Positives = 191/442 (43%), Gaps = 18/442 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  IG    I    K  + +   A +D LT + N++ F + L   +  +      +  V
Sbjct: 419 LLNVIGSIKAI---YKYTKDLEYYATRDPLTNLFNQRVFWELLGYEIGRAERHHQ-QFGV 474

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +VID+D +K IND  G  VGD  LV +   I   L+  DILAR  G+ F I+L    +  
Sbjct: 475 LVIDLDNFKHINDTYGHLVGDKYLVQIADTIHASLRLGDILARYGGDEFAIVLPD-ADHE 533

Query: 629 KIADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           ++   A  +R+++     +     +I  TASIG+A       T+ ++   A+   Y AK 
Sbjct: 534 QVHMVANRIREAMEAMTLVTADGSKIRGTASIGYAVCPDHATTAKDLFLFADNMTYKAKS 593

Query: 687 RGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G N +                 +   L  A+E  ++   + PI+    + +V  E L +
Sbjct: 594 LGKNCIVVPTNDDVVEVFQKSSDMSRLLLNALEEKQVVPYFQPIVTSDGQVVVCNEVLCR 653

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I +SEF+ IAE+L ++  ++  ++E++         QA+    ++ IN++ K
Sbjct: 654 VLVGD-QVIPASEFIEIAEKLGVVSRLDAILMEKVFAQ-----AQADAYDGYLFINLSPK 707

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L+  E    +  L ++   +  ++    +E   + N       +  L+  G    +DDF
Sbjct: 708 SLILKEFVPSVIKLSNQYQIAHDKVVFEITERETVKNMTLLEQFVQDLKLEGFKFAIDDF 767

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S   Y+  +P D VK  G  +       K  A ++++  +A+      IA+ I  E
Sbjct: 768 GSGFSSFQYIRRLPIDFVKIEGMFVLNMLNDPKDKAFVKTLAVLAREFGIKTIAEYIESE 827

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
             ++ +  +G D  Q  +   P
Sbjct: 828 ELLQAVRELGIDLAQGYYTGRP 849


>gi|327485312|gb|AEA79718.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 611

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 188/435 (43%), Gaps = 19/435 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      DNLTG+ NR    ++LT ++     +D    T+  +DID+++ IND+ G  +
Sbjct: 175 QLRHEISHDNLTGLMNRNDLAEKLTALV----QEDKHHFTLAFLDIDEFRSINDLHGHYL 230

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +   I + +       R++ + F  +        +       +   +A     
Sbjct: 231 GDLVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYID 286

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            +R + ++ SIG   ++  K+ + ++L NA LA+   K      +  +            
Sbjct: 287 QDRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRT 346

Query: 707 -----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L   +  +ELY+V  PI++         E L +W+    G ++  EF+  A
Sbjct: 347 QIIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAA 406

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISK 820
           E+  +I      +LE          +Q     I + IN ++ +L  +    E +   I  
Sbjct: 407 EQSGLIVEFGERILELAC-IAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKA 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +      +  +E+V++        +L  LR++G  + LDDFGT  S L+Y+   P D 
Sbjct: 466 YGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDC 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +      +   +I+  II +A  ++  ++A+ +  +  + +L +MGC+ IQ  
Sbjct: 526 IKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGY 585

Query: 939 HVASP-LGFNSILKL 952
           + + P L    I + 
Sbjct: 586 YFSRPDLPSVMIERW 600


>gi|291618989|ref|YP_003521731.1| YciR [Pantoea ananatis LMG 20103]
 gi|291154019|gb|ADD78603.1| YciR [Pantoea ananatis LMG 20103]
          Length = 770

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/626 (19%), Positives = 246/626 (39%), Gaps = 32/626 (5%)

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            ++GY          ++         + +T       +       L  +  L+   +  H
Sbjct: 110 LVQGYPFIRFYAGVPLITPDGHRIGTLCLTDNHPRPAMSTTDRQNLTDLAALVMDRMEVH 169

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +     +       +R     + S D +   D+ R      P    + G  +  M G  
Sbjct: 170 RMEVLRHA-----SQQRLEAISITSPDAIICTDLNRGITFWNPAATNMFGYDAEEMAGK- 223

Query: 450 RNWLPYIHIN----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
             ++  +       D  N    L+            +   +  + +     +        
Sbjct: 224 --YVAGLIPERCQTDYRNELERLEHEEAAISAPRTLQIWGKRCNGEEFPAEVSFSGWREG 281

Query: 506 NGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              I RYIG I  D+T + +S   +   A  D LT + +R +F+ +L+ +     T+  +
Sbjct: 282 ---IERYIGMIIRDVTLRYESEARLCELASLDMLTRLASRSAFMTQLSKL-----TESGV 333

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             T+++ D+D +K +ND  G A GD +L  +  +I  +       ARL G+ F ++L   
Sbjct: 334 PYTLLMTDLDSFKDVNDTRGHAAGDALLCHVAEQIRAVCTQAIAAARLGGDEFIVLLPCG 393

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++       A  +  +I  P + ++  I V AS G AS+      +S ++  A+LA+Y A
Sbjct: 394 SDE--AMKIAQQLTAAIQTPFHYMDSTIAVGASTGVASFPHHATDTSSVMSAADLALYRA 451

Query: 685 KHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G      F+     ++  R   + +L  AV   +  L Y P     + E++G EAL+
Sbjct: 452 KASGKGQSVLFKSEFREAELGRRRFERELEAAVRQQQFVLHYQPRFDAQNGELIGCEALV 511

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +  ++F+ +  +  +   +  ++++     +  WR Q     + + IN+  
Sbjct: 512 RWMHPARGLLFPADFIDMLIKSPLSITLGTWIVQSAVSQVKQWRAQ--NLSLRVSINLFP 569

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L++  L E ++            I L   E ++    +    +L  ++  G  L +D 
Sbjct: 570 RQLMEAGLEEVIRQC---AGDDAGFIDLEVDEPLLTNTVDIKSQVLEAIQATGALLIVDH 626

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYG 920
           FG   + +S L +     +K + SL     +      ++ +I  +AKN+  T+ A+ I  
Sbjct: 627 FGRSLASMSLLQHRCVAGLKIDKSLTLQLEKSNKTRLLINAIASLAKNMGITVAAEGIEN 686

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGF 946
           +     +    CD +Q +   SP+  
Sbjct: 687 DAQHALICAAECDVLQGNQTGSPVSA 712


>gi|302671240|ref|YP_003831200.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395713|gb|ADL34618.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 741

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 108/518 (20%), Positives = 203/518 (39%), Gaps = 24/518 (4%)

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW---MIIRIRPMSNSNGDILRYIGIAN 517
            D     +D     R+  +  ++  R       W      R   +    G I   + I  
Sbjct: 233 VDRLNEGIDKLTDTRKQAIVLDYTSRRLYQNDFWDYLFEYRYLLIL---GTIFFILFIIA 289

Query: 518 DITEQK----KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            + +QK    +  E I     +D LTG+ N + F  R+  +L    T    +  +   +I
Sbjct: 290 IVHKQKAIYRQHEEKIRELTEKDPLTGVLNLEGFKKRVEELL---VTHPENQYLLSFSNI 346

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             +K IN+ +G   GDD+L     R        + + R++G+RF  +L    ++ ++   
Sbjct: 347 KNFKFINESMGRKTGDDLLRFWAERATATFSDEEAMGRINGDRFA-VLRKFTDAEQMGRD 405

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKI---TSSEMLKNAELAMYHAKHRGGN 690
              + + +        +EI +    G  + T           ML  A +A    +     
Sbjct: 406 EKEVFEPLRNYFIDRGKEIQLQICTGVFAITPEDHKNIDVDRMLDYARMAEKKVRETLKT 465

Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             E +    +      V I   L  A++  E+ + Y P +      I G EAL +W H K
Sbjct: 466 GYEFYNPEQWEKGKQIVDISGHLPAALQEGEIQVWYQPQVDYTSGTISGAEALCRWKHAK 525

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL-D 807
            G IS   F+ + EE  MI  ++ ++ +++ +D+  W  +       + IN++  D+  D
Sbjct: 526 RGWISPGVFIPVLEETGMIFDLDSYVWDKVCQDLHRWNQEGKRRS--VSINLSRSDIRED 583

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +      L  K    P ++++  +E+  + +P         LR+ G  + +DDFG+  
Sbjct: 584 RNIPGIFYELTKKYDLDPEQLRIEITETAYVESPAFLIKTTSELREYGFQVEMDDFGSGY 643

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L  L  +P D +K +   +TG+   EK   I+  +I + + +   +IA+ +  +    
Sbjct: 644 SSLHMLKEVPVDRIKMDLHFLTGAGDMEKSRIIITQVIKLVELLGMKLIAEGVETKAQAD 703

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            L   GC  +Q  +   P+      K   +     K  
Sbjct: 704 FLKERGCQEMQGYYFFKPMPVEDFEKAFDKELDYDKRA 741


>gi|90415542|ref|ZP_01223476.1| hypothetical protein GB2207_09501 [marine gamma proteobacterium
           HTCC2207]
 gi|90332865|gb|EAS48035.1| hypothetical protein GB2207_09501 [marine gamma proteobacterium
           HTCC2207]
          Length = 793

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 139/758 (18%), Positives = 282/758 (37%), Gaps = 35/758 (4%)

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK----- 281
             L         L  L +  +  +  W   +   L+S  +    + +  +   +      
Sbjct: 43  SGLRISMAGAILLVVLASNQNPIIWNWAWLTTAVLASLTVWLWSVKIRRDTKASTSQTQT 102

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           +   +    A +     ++F  P         +L  I L Y + + Y     +    L +
Sbjct: 103 LITTSSLIFAALYGAAAVTFITPDSLEKSVFASLMLIALTYAWPLTYALKAIFRHLFLSL 162

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               L    F          L    +   +     L           +++     S  + 
Sbjct: 163 IFAPLFIALFSYQPQINPGFLILVPLAYFIFNRNQLSQRRAFSWATGNMIKADEHSDVVI 222

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
           +  ++ +  +  +     +W+  R+ +   P   TI G A   + G    +L        
Sbjct: 223 ATSQKITSLIEQTPLGFIEWNQEREIIGWNPAATTIFGYAKDEVLGRTTEFL-------Y 275

Query: 462 DNFRTILDSFVGYRRGRLQYEF----RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           D  ++ L   V         +F         D           P+ +   +++       
Sbjct: 276 DKKKSFLLQQVENDLFLFGKDFTGTAENVTRDGTMIICEWNDTPLFDEAMNVVGAASFVE 335

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T++      I   A+ D LTG+PNR   ++ L  ++ L+        +++ ID+D +K
Sbjct: 336 DVTDRVNLETRIKQQAYFDPLTGLPNRPRLMEELNRVVALAQRSQ-AYCSLLFIDLDHFK 394

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IAD 632
           +IND  G   GD  L    +R+ ++++  + +ARL G+ F ++L +     +     I  
Sbjct: 395 EINDTRGHHYGDLALALFAQRLRKVIRTEEAVARLGGDEFVVLLENLGTEEEPSRLQIDQ 454

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +   P+ + + +  ++ SIG   +         +L+ A+ A+Y  K  G ++ 
Sbjct: 455 VAEKIIDAAREPLVIKDEKFRISCSIGIVLFNDGSSDGEAILQQADKALYTIKREGTSNY 514

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   S    + M+ E L     N      Y PI+      I GL+  ++W +P   
Sbjct: 515 YFHNQKLPSEMQTQAMLLEQLRDKTNNQSFLPYYQPILDTKTNLICGLQIFLRWKNPDNE 574

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNE 809
            I+++E + + E   MI  I+L +LE+I   +  WR Q        I   ++ ++L    
Sbjct: 575 LIAANEIIALLESGSMIVDISLTLLEQIFNQVDLWRTQDLWREDQQIYYTLSLRELEHPS 634

Query: 810 LCEGMQALISKTLYSPSRIKLSF-SESVV-MGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               ++AL++K       +  +  +E++  + NP    L L  L+ +GI   +D+ G   
Sbjct: 635 FTLSIKALLTKYAIKADTLVFTIHTETLPKIHNP--LTLQLNSLKALGIQFVVDNVG--Y 690

Query: 868 SLL--SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             L    L      T++ +  LM      E    +++ ++ + K++    IA  +     
Sbjct: 691 QTLPIQKLREFDVSTIRISHKLMAECPYMESSWNLVKGLVELTKSVGLNCIAPCVEEAEI 750

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              L   GC  +Q + +A P    +I ++L ER  L +
Sbjct: 751 HHLLLDTGCQLLQGNLIAPPSPATAITRMLIERNSLSR 788


>gi|51598126|ref|YP_072317.1| biofilm formation regulator HmsP [Yersinia pseudotuberculosis IP
           32953]
 gi|51591408|emb|CAH23074.1| putative membrane protein [Yersinia pseudotuberculosis IP 32953]
          Length = 728

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 190/420 (45%), Gaps = 10/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PNR  F+  L   +  S   D+    ++VI I+  ++++  +  A    +L+++ 
Sbjct: 304 PVTELPNRSLFISLLEKEIASSTRTDHFH--LLVIGIETLQEVSGAMSEAQHQQLLLTIV 361

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +RI + +   ++LA+LS   F ++      S      A  +   +  P+   E  +  +A
Sbjct: 362 QRIEQCIDDSNLLAQLSKTEFAVLARGTPRSFPAMQLARRIMSQVTQPLFFDEITLRPSA 421

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLA 714
           SIG   + + + T+  M++NA  AM  A H G N +  F           +  + DL  A
Sbjct: 422 SIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA 481

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN +  L   P   +  ++++G EAL++W  P    +  S F+  AEE  M+  +  ++
Sbjct: 482 IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWV 541

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE   R +  W+ +     + + +NI+   + + +    ++ LIS     P ++ L  +E
Sbjct: 542 LEEACRILADWKARG--VSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQKLLLEITE 599

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTGS 891
           +  + + + +  LL  L+ +G+ + LDDFG   S L Y   L  +P   +K + S +   
Sbjct: 600 TAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNL 659

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E   AI R I  ++  ++  ++A+ +  E   + L   G    Q    + PL       
Sbjct: 660 PEDD-AIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCCQGFLFSPPLPRAEFEA 718


>gi|254225853|ref|ZP_04919456.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125621580|gb|EAZ49911.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 607

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 96/438 (21%), Positives = 190/438 (43%), Gaps = 19/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      DNLTG+ NR    ++LT ++     +D    T+  +DID+++ IND+ G  +
Sbjct: 175 QLRHEISHDNLTGLMNRNDLAEKLTALV----QEDRHHFTLAFLDIDEFRSINDLYGHYL 230

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +   I + +       R++ + F  +        +       +   +A     
Sbjct: 231 GDLVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYID 286

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            +R + ++ SIG   ++  K+ + ++L NA LA+   K      +  +            
Sbjct: 287 QDRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRT 346

Query: 707 -----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L   +  +ELY+V  PI++         E L +W+    G ++  EF+  A
Sbjct: 347 QIIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAA 406

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISK 820
           E+  +I      +LE          +Q     I + IN ++ +L  +    E +   I  
Sbjct: 407 EQSGLIVEFGERILELAC-IAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKA 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +      +  +E+V++        +L  LR++G  + LDDFGT  S L+Y+   P D 
Sbjct: 466 YGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDC 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +      +   +I+  II +A  ++  ++A+ +  +  + +L +MGC+ IQ  
Sbjct: 526 IKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGY 585

Query: 939 HVASP-LGFNSILKLLKE 955
           + + P L    I +  KE
Sbjct: 586 YFSRPDLPSVMIERWRKE 603


>gi|86747637|ref|YP_484133.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
 gi|86570665|gb|ABD05222.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris
           HaA2]
          Length = 583

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 114/543 (20%), Positives = 228/543 (41%), Gaps = 16/543 (2%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +  +   G   + W++  D +  T   A +              +   +  +       +
Sbjct: 23  AEILAALGQAAFVWELATDALVWTGPAAGLFQDIPAGTLATGAGYASLLEPSRAIRADAL 82

Query: 468 LDSFVGYRRG--RLQYEFRVRAA-DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           L++           + E+ VRAA      W+    R     +G   R  GI     E+  
Sbjct: 83  LNASAAAGAHCVPYRIEYGVRAATSAPIIWIEESGRWHPGPDGRPARVEGIVRVNNERHA 142

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             + +L  +  D LTG  NR + +  L   ++ ++   N     M+I ID   +IND  G
Sbjct: 143 RDQQLLKLSQNDPLTGELNRTNLVAALAEAIEEASRFRN-SLCFMLIGIDHLSRINDSFG 201

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             V D+V+ +L++RI   L+  D L R SGN+FG++L +             +       
Sbjct: 202 FDVADEVIYTLSQRIRARLRAGDELGRFSGNKFGVVLKACTIDDAHVAAERFLAAIRDEI 261

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           +      +++TASIG  S      T+ E +  A+ A+  AKHR       +R +  R  +
Sbjct: 262 VPTRSGPVSITASIGAVSSPRHARTAEEAINRAQEALAAAKHRRCGAFSMWRPNVERDAQ 321

Query: 705 VMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +     +++  A+    + L Y P++ +        E L++        + + + + +
Sbjct: 322 RRVNIRVTDEIVTALNERRIVLAYEPVVDVATRAPAFHECLVRMRQNDGQVLLAPDIVPV 381

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE L +I+ ++  +LE +  ++ +       P + + +NI+    +D +   G+++L+  
Sbjct: 382 AERLGLIRLVDHRVLELVVAELAAA------PQMTLSLNISPDTTMDADWWAGIESLMLA 435

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 R+ +  +E+V + + E  R  + RL+K G  + +DDFG   +    L  +  D 
Sbjct: 436 HPGVAERLIVEITETVAIQDIEEVRGFVTRLKKFGAKIAIDDFGAGYTSFRNLRNLGVDI 495

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +G+ +     +    A ++++I +A+ +    +A+ +  +     L   GCDYIQ  
Sbjct: 496 VKIDGAFVQNIARSADDRAFVQTLIDLARRLGIKTVAEWVQDDESALMLRDWGCDYIQGR 555

Query: 939 HVA 941
            + 
Sbjct: 556 LIG 558


>gi|251779686|ref|ZP_04822606.1| MorA [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084001|gb|EES49891.1| MorA [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 1048

 Score =  358 bits (918), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 96/462 (20%), Positives = 207/462 (44%), Gaps = 17/462 (3%)

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            W+ +    +     +I   +   +DIT     L+ I+     D LTG+     F      
Sbjct: 596  WISMTASKIKLPE-NIEANLMYFSDIT---NFLDRIISK---DALTGLMTLPKFEVMANE 648

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +L+ S+     +  ++  D DK+K IN+  G A+G+ VLV  +  +  LL   +++ R S
Sbjct: 649  LLNKSSN----KYALIYSDFDKFKYINETAGYAIGNKVLVKFSYLLSTLLDTDELVCRAS 704

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
             + F  ++    +   + +  I     I          I ++   G    T+   + S M
Sbjct: 705  ADNFLTLI-KYTDIETLKNRLINFNNEILKFQKEDFNHIKLSIISGIYLITNVNDSLSSM 763

Query: 674  LKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            +  A +A    K    +    +        ++   I+  +  A++N E  +   P I+L 
Sbjct: 764  IDKANVARKTIKGSHKSQFAFYDSKLHIKATEEKKIENRMIDALDNREFVIYLQPKIQLS 823

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +++VG EAL++W  P        +F+ + E+   I  ++ ++ E + + + +W D    
Sbjct: 824  TKKLVGAEALVRWITPDNVIFYPGKFIPLFEKNGFIVELDFYVYEEVFKVLHNWMDNKKR 883

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
              + I +N++   + ++     +  LI +     + I+L  +E++ + N +     +  L
Sbjct: 884  L-LPISMNVSRAHINNDTFISRLITLIKQYGIPINLIELELTENIFLDNIKEVLSKITEL 942

Query: 852  RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
            + +G + ++DDFG+  S L+ L  +P D +K + S    +  + K   I+ +I+ MAK++
Sbjct: 943  KNLGFTFSMDDFGSGYSSLNLLKELPIDVLKLDKSFFPNNSVSSKEKIIVANIVKMAKDL 1002

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +++++ +  +  +  LT++GCD +Q    + P+  +   K
Sbjct: 1003 NISVLSEGVETQNQVDFLTQIGCDMVQGYFFSKPIPVDEFEK 1044



 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 16/299 (5%)

Query: 429 TTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               +   ILGL     +   + + L  I   D D F+ IL          ++ EFR+  
Sbjct: 45  YANLEFFKILGLKKDIFNKDYKNDILSIISKEDIDLFKNIL-VTKHNVGDNIKIEFRINK 103

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-----DNLTGIP 542
            D  F W+++  R +SN N +  ++I I NDITE K + + +     +     D LT + 
Sbjct: 104 NDANFSWLLLMGRCVSNKNCN-YQFICILNDITESKNTQQKLEIETLKLKIQLDPLTKLY 162

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           N+ +    +   L    ++      +M+IDID +K IND LG   GD++L+ ++  +   
Sbjct: 163 NKTASKVLIEDFL---KSNTLTSHALMIIDIDNFKFINDNLGHIFGDNILLKVSDTLKSC 219

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
               DI+ R+ G+ F +   +  ++  I+  A  +  SI       + + +++ SIG + 
Sbjct: 220 FNKDDIVGRVGGDEFIVFFKNVIDNEMISTKAYTVCNSIKKIYI--DEKHSISCSIGISI 277

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                +   ++ + ++ A+Y AK  G +  E +  +     +   + D+      + LY
Sbjct: 278 SPVDGVNYYDLFEKSDHALYLAKRYGKDCFEIYDKNKIDIFK---ESDIFNFHSKNNLY 333


>gi|238750218|ref|ZP_04611720.1| Diguanylate cyclase/phosphodiesterase [Yersinia rohdei ATCC 43380]
 gi|238711451|gb|EEQ03667.1| Diguanylate cyclase/phosphodiesterase [Yersinia rohdei ATCC 43380]
          Length = 656

 Score =  358 bits (918), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 94/440 (21%), Positives = 193/440 (43%), Gaps = 18/440 (4%)

Query: 524 KSLEGILCNAFQD--------NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              + +L  A+ D         +T +PNR  F+  L   +      +     ++VI I+ 
Sbjct: 215 NRNQQLLAEAYTDMNRIYSRFPVTQLPNRSLFMHLLEEDIASGMQCEKFH--LLVIGIET 272

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            ++++ V+       + +++ +R+ + L    +LA+LS   F ++    +        A 
Sbjct: 273 LQEVSGVMTEEQHQQLSLTMAQRLEQCLDEKSLLAQLSKTEFAVLARGISRPFPAMQLAR 332

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I  P+     ++  +ASIG   + S   T+  +++NA  AM  A H+G N +  F
Sbjct: 333 RIMTQITQPLIFSNMQLRPSASIGITDYQSQNETAECLMRNASTAMMAAHHQGRNQIVVF 392

Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   +  +  + D+  A++N +  L   P   +    ++G EAL++W        S
Sbjct: 393 EPRLTEKTQKRLTQENDILQAIDNQDFVLFLQPQWDMQQPRVIGAEALLRWRQADGSYQS 452

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            SEF+  AEE  ++  +  ++LE   R +  W+ Q     + + +NI+   +  ++    
Sbjct: 453 PSEFVPGAEEGGVMVPLGNWVLEEACRILADWKAQGIT--LSLAVNISGLQVKSDQFLPH 510

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY- 872
           ++ +IS    +P ++ L  +E+  + + + + +LL  L+ +G+S+ LDDFG   S L Y 
Sbjct: 511 LKTIISHYQINPRQLILEITETARLQDLDEALMLLRELQGLGLSIALDDFGMGYSSLQYL 570

Query: 873 --LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
             L  +P   +K +   +    E    + R I  +++ ++  +IA+ I  +   + L   
Sbjct: 571 NHLKDLPISAIKLDKIFVKHLPEDD-VMARIISTISEVLKLRVIAEGIETDEQRQWLLAH 629

Query: 931 GCDYIQDSHVASPLGFNSIL 950
           G  Y Q    +  L      
Sbjct: 630 GIHYGQGFLFSKALPREEFE 649


>gi|111225181|ref|YP_715975.1| hypothetical protein FRAAL5824 [Frankia alni ACN14a]
 gi|111152713|emb|CAJ64456.1| Hypothetical protein; putative membrane protein [Frankia alni
           ACN14a]
          Length = 864

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 193/430 (44%), Gaps = 18/430 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +          D LT + NR  F  RLT  L  ++  D     V+  D+D ++ IND L
Sbjct: 408 NAEREARHWTSHDPLTELANRTLFHRRLTDALA-ASRHDGRDVAVLYCDLDDFRIINDSL 466

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L ++ +R+   +   D +ARL  + F ++L            A  +  ++  
Sbjct: 467 GHAAGDHLLRAVGQRLRHCVGATDTVARLGSDEFAVLLDGGRELP--ETVAERVLAALRQ 524

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--- 700
           P+++      V  S+G      ++ T+  +L+ A+ A++ AK  G N +  +R       
Sbjct: 525 PVSVGGHHWAVRGSVGLVVAGRTQETTEALLRRADTAVHAAKRTGKNRLVVYRPGQCVTA 584

Query: 701 -------RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        +   L     ++   + Y PI+RL D   V LEAL +W  P  G + 
Sbjct: 585 GPHLVAGTHLADALATALRRGGRSAGFDVHYQPIVRLRDRSPVALEALARWTAPGRGPVP 644

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AE   ++ A++  +L +   +I           + + +N+++  + D  L + 
Sbjct: 645 PGTFVAAAENGGIVGALDDTILTQACAEIAL---AYPDSTLRLHVNVSASRVTDTTLLDS 701

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   ++ + + P R+ +  +E+  + +   +R +L  +R +G+++ LDD G   S L+ +
Sbjct: 702 VARALAASRFDPRRLVVEITETSRIDDLHGAREVLDEVRALGVAVALDDVGAGNSTLAAM 761

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D VK + +L+       +  A+ RS+I +A  +   ++A+ I  E  I EL  +G
Sbjct: 762 HLLPVDVVKLDRTLLEPPQDGGRAAAMRRSMIVLAHALGAVVVAEGIEREGQIAELEELG 821

Query: 932 CDYIQDSHVA 941
           C+  Q    A
Sbjct: 822 CELGQGFLFA 831


>gi|187933592|ref|YP_001886421.1| diguanylate cyclase/phosphodiesterase [Clostridium botulinum B str.
            Eklund 17B]
 gi|187721745|gb|ACD22966.1| diguanylate cyclase/phosphodiesterase [Clostridium botulinum B str.
            Eklund 17B]
          Length = 1318

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 179/422 (42%), Gaps = 9/422 (2%)

Query: 536  DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
            D LTG      F      +L         +  ++  DI+K+K IN+  G A+G+ VL   
Sbjct: 900  DTLTGALTLAKFEVLAKNLLAN---TSYTKFALIYCDINKFKYINETSGYAIGNKVLAHF 956

Query: 596  TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
               +   L   +++ R S + F I+L  +N    + +      +       +    + + 
Sbjct: 957  AHFVSSFLFSGELICRASADNFIILLKYDN-IESLKNRFKVFNEKFMEVQKMNFNNLKIP 1015

Query: 656  ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCL 713
               G     S     S M+  A +A    K    +    +        +    I+  +  
Sbjct: 1016 VICGIYLIDSEDTDLSLMIDRANIARKTIKGSHKSKYALYDHELHLKITKEKEIENLMFS 1075

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++EN+E  +   P I L  + IVG EAL++W  P    I  +EF+ + E+   I  ++ +
Sbjct: 1076 SLENNEFLVYLQPKIDLPTQTIVGAEALVRWMSPSKKLIPPNEFIPLFEKNGFIIELDFY 1135

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            + E I + + SW  +     I I +N++   + D++    ++ L  K     + I+L  +
Sbjct: 1136 VYEEIFKKMNSWIQEGKKV-IPISLNVSRSHINDSDFIPRLKKLTEKYDVPTNLIELELT 1194

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
            ES+   + +     + +L+ +G + ++DDFG+  S L+ L  +P D +K +      +  
Sbjct: 1195 ESIFFDDIQVLLNAIIKLKALGFTCSIDDFGSGYSSLNLLKDLPIDVLKLDKEFFPNSSI 1254

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K   I+ +I+ MA+++   +I++ I  +     LT +GCD  Q      P+      K
Sbjct: 1255 NSKEKVIISNIVKMAQDLNIIVISEGIETKEQADFLTEIGCDMAQGYLFDKPMPIKMFEK 1314

Query: 952  LL 953
             L
Sbjct: 1315 KL 1316



 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 141/338 (41%), Gaps = 9/338 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LA 441
             +I  +  +      +  + +R  +    S +I++D+DI   ++  +     I G    
Sbjct: 270 LCIIVDITESKQIQHALELERKRYKIIAEQSNNILFDYDIPTCKMVYSMKFTNITGKDYN 329

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +      N    I+  D   F  ++ S    +   +  + R+   +N + W  I+   
Sbjct: 330 IPNFVHETIN-SNLIYKKDLPKFLNLIKSLSSGK-DFITTDLRINGLNNSYVWFKIQATV 387

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +   +   ++ IG   +I ++K+  E +   A  D LT + N+      +   +   A +
Sbjct: 388 LF-EDKTPIKAIGSIVNIDKEKRENEALKLKARLDPLTKVYNKVVTKSLIENYITTVAKE 446

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +M+IDID +K +ND LG   GD VL  ++  I ++ K  DI+ R+ G+ F I +
Sbjct: 447 K--YHALMIIDIDNFKSVNDNLGHMFGDSVLSEVSSSIKKVFKESDIVGRIGGDEFIIFI 504

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            + ++   I+  A  +             +  ++ SIG + + +  IT  E+ K A+ A+
Sbjct: 505 KNISSYEVISQKANDLCTVFKSIYTGENNDFKISCSIGISIYPTHGITYDELFKKADKAL 564

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           Y +K  G N  E +       ++   ++ L      +E
Sbjct: 565 YSSKSNGKNKFELYNPKLNSFNKN--EDLLLNYYTENE 600



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 429 TTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                   ++G              +  I+  D    R  L   +      ++ E +++ 
Sbjct: 188 YANDGFYKLIGYTREEFKNLMNNQVIKIINNKDLTKVREQL--LLNTSNNGIKAEIKLKK 245

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
              +  W+++       ++ ++  ++ I  DITE K+   
Sbjct: 246 KSGEIIWILLSGHKFI-TDNNLPEFLCIIVDITESKQIQH 284


>gi|320334994|ref|YP_004171705.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Deinococcus maricopensis DSM 21211]
 gi|319756283|gb|ADV68040.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Deinococcus maricopensis DSM 21211]
          Length = 558

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 115/557 (20%), Positives = 236/557 (42%), Gaps = 33/557 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
              A   S   V   D    +V    P +  +  +    + G     L      D   + 
Sbjct: 21  FRAAFDTSPVGVAVLDARTGQVVHANPALLALTSVPLSGLIGRTGPELHLWPDGDPMRW- 79

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                         + + ++RA D +   + +  R      G     + +   ++  +  
Sbjct: 80  ----------TSPCERDTQLRARDGRVLPVTVN-RCDLTVQGRPCTLLHVRAALSAPQGP 128

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                     D LTG+PNR + + RL  +L  +         V++++   + +++  LG 
Sbjct: 129 PP-------HDALTGLPNRTTLMTRLEGLLRTARAR---TVGVLLVNFTAFPQVDATLGF 178

Query: 586 AVGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            VGD  +V++  R+ +L       IL R+ G  F  +     ++  +  +A A+ +++ M
Sbjct: 179 QVGDAAVVAVAERLAQLTNAVPGAILGRIDGPLFV-VARPAQSAADLEAYAEALLRNLDM 237

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
           P  +   ++ ++  +G +      + +  +   A +A+  A  R   + E +R   +   
Sbjct: 238 PFEVQGHDLHLSPRVGLSVAPRDGVGAGTLFSRASVALAAACRRPIVNAEVYREALTQAA 297

Query: 702 SDRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            DR+ ++EDL  AV + E   + Y PII      +   EALI+W HP  G +    FM +
Sbjct: 298 RDRLRLEEDLRRAVRDGEGFVVEYQPIIDAARGVVASAEALIRWAHPTRGLLPPGAFMGL 357

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE   +I  +   +L      + +W  +     + + +N+A+      +L   +   +S 
Sbjct: 358 AEGSGLIVDLGRLVLRGACAQVAAWAREGLH--VHLNVNVAAAQFERGDLVPTVAQALSD 415

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T   P+++ L  SE V++ +   + + L RLR +G+ + +DDFGT  S L+ L  +P D 
Sbjct: 416 TGLPPAQLTLELSEQVLLEDAHNAAVQLARLRVLGVRVAVDDFGTGYSNLAGLVRLPVDD 475

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S M         +A++ S + + + ++  ++ + +     ++++ R+GC  IQ  
Sbjct: 476 LKLDRSFMQDLELGGGALAVVESTLLLTRRLDLKVVVEGVETVPQLEQVRRLGCHLIQGF 535

Query: 939 HVASPLGFNSILKLLKE 955
           + A PL  ++ L   + 
Sbjct: 536 YFARPLSADAFLAFARA 552


>gi|238783992|ref|ZP_04628008.1| Diguanylate cyclase/phosphodiesterase [Yersinia bercovieri ATCC
           43970]
 gi|238715100|gb|EEQ07096.1| Diguanylate cyclase/phosphodiesterase [Yersinia bercovieri ATCC
           43970]
          Length = 633

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 105/502 (20%), Positives = 215/502 (42%), Gaps = 28/502 (5%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH          L+          Q        D++          + N N +      
Sbjct: 149 IIHP--LRAMAKELEKIGQQGVLHHQLTLPAHHQDDEL------GVLVHNYNRNQQLLAE 200

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             +D++            + +  +T +PNR  F   L   ++     +     ++VI I+
Sbjct: 201 AYSDMS----------RISTRFPVTELPNRVLFKQLLEQEINGGMRSEKFH--LLVIGIE 248

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             ++++ V+       +L+++ +R+ + +    +LA+LS   F ++    +        A
Sbjct: 249 TLQEVSGVMSEEQHRQLLLTMAQRLEQCIDENSLLAQLSKTEFAVLARGISRPFPAMQLA 308

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   I  P+     ++  +ASIG A + S   T+  +++NA  AM  A H+G N +  
Sbjct: 309 RQVMLQITQPLLFGNIQLRPSASIGIAEYQSQDETAESLMRNASTAMMAAHHQGRNQIFV 368

Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F        +  +  + D+  A+EN +  L   P   + D+ ++G EAL++W  P     
Sbjct: 369 FEPHLIEKTQKRLTHENDILQAIENRDFTLFLQPQWNMQDQRVIGAEALLRWRQPDGSYR 428

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S SEF+L AEE  M+  +  ++LE   R +  W+ Q     + + +NI+   +  ++   
Sbjct: 429 SPSEFVLGAEEGGMMMPLGNWVLEESCRILADWKAQGIT--LSLAVNISGLQVQSDQFLP 486

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q LI++    P ++ L  +E+  + + + +  LL  L+ +G+S+ LDDFG   S L Y
Sbjct: 487 HLQNLINQYQIDPRQLLLEITETARIQDLDEALRLLRELQGLGLSIALDDFGMGYSSLQY 546

Query: 873 LGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L +   +P + +K + S +    E   A+ R +  +++ ++  ++A+ +  +   + L +
Sbjct: 547 LNHLKGLPINMIKLDKSFVKHLPEDD-AMARIVSTISEVLKLRVMAEGVETDEQRQWLLK 605

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            G    Q    + PL       
Sbjct: 606 HGILCGQGFLFSQPLPREVFEA 627


>gi|311898487|dbj|BAJ30895.1| putative signaling protein [Kitasatospora setae KM-6054]
          Length = 1008

 Score =  357 bits (917), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 147/818 (17%), Positives = 286/818 (34%), Gaps = 106/818 (12%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIW 253
           ++ G    L+  L +  +           A+    LGY  +D   +S +V L        
Sbjct: 148 LVAGSLFTLSWSLALGRVAAGDGDDPLKLAL---GLGYPVLDILLVSLVVGLRFRGRDGN 204

Query: 254 RACS-EIALSSSLIIFLFMYLHWNRWH--AKVGYITFSGIACIAILFCMSFYYPMVTASI 310
           RA      +  +L +         ++H     G +  +G    ++L   + +      S 
Sbjct: 205 RAAVHTAMIGLALTVVCDALFTTPQFHSDYHSGELLDAGWFAGSLLLAWAPWQHGRRPSR 264

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
              +   +             +       L P           L+ A+  R  + ++  A
Sbjct: 265 EHPSAQGLP----------RRRVASTFSALTPYAAAAVCTAGILYNALGGRPLDRVMLAA 314

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
                V + +++   V+  +L     +Q + +        V GS D++            
Sbjct: 315 --ASTVGLALIVRQGVM--LLDNLSLAQELATKEAHFRSLVQGSSDVIMIAGPSGALSYV 370

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG--------RLQYE 482
           +P    +       + G   N L  +H  D D     +   +   +G          + E
Sbjct: 371 SPAALRVYNRDPEGLVG--GNLLNLVHPEDVDRVLAEVRRILARTKGARFSNGAPSARVE 428

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R+R+ D ++  +   + P  +        I  + DITE+ +    +  NAF D LT +P
Sbjct: 429 CRIRSGDGEWLHVESTVNPYRD------GLILNSRDITERVRLQAQLQHNAFHDPLTDLP 482

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  F  R+   L  +         V+ +D+D +K +ND  G  VGD++LV   RR+   
Sbjct: 483 NRALFAHRVRAALS-AQGPVGTAVAVLFLDLDGFKAVNDTAGHQVGDELLVQAARRLQAA 541

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           ++  D +AR  G+ F +++       ++ D A  +R +++ P  +   E+ V ASIG A 
Sbjct: 542 VRAEDTVARFGGDEFAVLVRGRLGHPQVRDLAERIRGALSEPYWIGGAELGVAASIGIAF 601

Query: 663 WTS----------------------------------------SKITSSEMLKNAELAMY 682
                                                      ++  +  +L++A+LAMY
Sbjct: 602 GPDTPLPVPEPAAPQDGPAGCRAAAGPCPGAERGERDRTGKDAAQTAADGLLRDADLAMY 661

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G   V  +  +          ++E L  AV      L++ P++ L    + G+EA
Sbjct: 662 QAKSSGKGRVVLYTPAMRAELDRRTELEERLRAAVREGSFTLLHQPVVELAGGRLTGVEA 721

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML-ERIARDIISWRDQANMPPIFILIN 799
             +W       ++ +EF+  AE          ++L E +A       D    PP+ + + 
Sbjct: 722 QARWRSADGLLLTPAEFLRTAESGDAATRFTRWLLAEAVAAAARRRADGPAAPPVPVTVR 781

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +A++ +    + E +   +  T   P  + L  + +      +     L  LR +G+   
Sbjct: 782 LAAERICAPGMYETLAGALRDTKLPPELLVLEVARTGPDALADELGRRLAALRGLGV--- 838

Query: 860 LDDFGTKCSLL------------SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPM 905
                                    L  +PFD +K + +L+    E     A+    + +
Sbjct: 839 ---------STALAGFGAGGGSLGALARLPFDALKLDRTLVQDIAESALTRALAGHALRL 889

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            +++     A  +     +  L  +GC   Q      P
Sbjct: 890 GRDLGLVTGADGVDHPRQVAVLQELGCRRGQGLAFDRP 927


>gi|188590266|ref|YP_001921416.1| MorA [Clostridium botulinum E3 str. Alaska E43]
 gi|188500547|gb|ACD53683.1| MorA [Clostridium botulinum E3 str. Alaska E43]
          Length = 1048

 Score =  357 bits (917), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 205/465 (44%), Gaps = 23/465 (4%)

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            W+ +    +     +I   +   +DIT     L+ I+     D LTG+     F      
Sbjct: 596  WISMTASKIKLPE-NIEANLMYFSDIT---NFLDRIISK---DALTGLMTLPKFEVMANE 648

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +L+ S+     +  ++  D DK+K IN+  G A+G+ VLV  +  +  LL   +++ R S
Sbjct: 649  LLNKSSN----KYALIYSDFDKFKYINETAGYAIGNKVLVKFSYLLSTLLDTDELVCRAS 704

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT---VTASIGFASWTSSKITS 670
             + F  ++        I      +       +   + E     ++   G    T+   + 
Sbjct: 705  ADNFLTLIKYT----DIETLKNRLINFNNEILKFQKEEFNHIKLSIISGIYLITNVNDSL 760

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              M+  A +A    K    +    +        ++   I+  +  A++N E  +   P I
Sbjct: 761  FSMIDKANVARKTIKGSHKSQFAFYDSKLHIKATEEKKIENRMIDALDNREFVIYLQPKI 820

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +L  +++VG EAL++W  P        +F+ + E+   I  ++ ++ E + + + +W D 
Sbjct: 821  QLSTKKLVGAEALVRWITPDNVIFYPGKFIPLFEKNGFIVELDFYVYEEVFKVLRNWMDN 880

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                 + I +N++   + ++     +  LI +     + I+L  +E++ + N +     +
Sbjct: 881  KKRL-LPISMNVSRAHINNDTFISRLITLIKQYGIPINLIELELTENIFLDNIKEVLSKI 939

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
              L+ +G + ++DDFG+  S L+ L  +P D +K + S    +  + K   I+ +I+ MA
Sbjct: 940  TELKNLGFTFSMDDFGSGYSSLNLLKELPIDVLKLDKSFFPNNSVSSKEKIIVANIVKMA 999

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            K++  +++++ +  +  +  LT++GCD +Q    + P+  +   K
Sbjct: 1000 KDLNISVLSEGVETQNQVDFLTQIGCDMVQGYFFSKPIPIDEFEK 1044



 Score =  150 bits (378), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 130/299 (43%), Gaps = 16/299 (5%)

Query: 429 TTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               +   ILGL     +   + + L  I   D D F+ I           ++ EFR+  
Sbjct: 45  YANLEFFKILGLKKDIFNKDYKNDILSIISKEDIDLFKNIF-VTKHNVGDNIKIEFRINK 103

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-----DNLTGIP 542
            D  F W+++  R +SN N +  ++I I NDITE K + + +     +     D LT + 
Sbjct: 104 NDANFSWLLLMGRCVSNKNCN-YQFICILNDITENKNTQQKLEIETLKLKIQLDPLTKLY 162

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           N+ +    +   L     +      +M+IDID +K IND LG   GD++L+ ++  +   
Sbjct: 163 NKTASKVLIEDFL---KNNTLTSHALMIIDIDNFKFINDNLGHIFGDNILLKVSDTLKSC 219

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
               DI+ R+ G+ F +   +  N+  I+  A  +  SI       + + +++ SIG + 
Sbjct: 220 FDKDDIVGRVGGDEFIVFFKNIINNEMISTKAYTVCNSIKKIYI--DEKHSISCSIGISI 277

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                +   ++ + ++ A+Y AK  G +  E +  +     +   + D+      + LY
Sbjct: 278 SPVDGVNYYDLFEKSDHALYLAKRYGKDCFEIYDKNKIDVFK---ESDIFNFHSKNNLY 333


>gi|217973376|ref|YP_002358127.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
            [Shewanella baltica OS223]
 gi|217498511|gb|ACK46704.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Shewanella baltica OS223]
          Length = 1027

 Score =  357 bits (917), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 134/693 (19%), Positives = 272/693 (39%), Gaps = 32/693 (4%)

Query: 275  WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
              + +  +     +    +A     +    ++      I   + +L      I +     
Sbjct: 345  LKKENKHLRTAERTWQGMLA-----ASPDGILIIGSDGIIEQANLLACAQLGIEYQEVSG 399

Query: 335  ERAVLLIPAWILIFIWFIGLWMAITK---RLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
                 L+ A   +           T    R D+ +    L    + I    G  +I   L
Sbjct: 400  RSYGQLLSAETALVHLDNIKEAISTGKAIRWDDSLDHSHLGLTAIPIDDGSGVILICRDL 459

Query: 392  ATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                       D   R    +    D++W  D     +        ++GLA   + G   
Sbjct: 460  TQQMHIAASEKDKRARLKTLIETLPDLIWLMDTNGCLLNCNSKFENLVGLAESQLKGHSI 519

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                 +        +      +  +      E+   AAD    ++ I + P  +  GDI 
Sbjct: 520  Q--DILPQTIAKTLQDNATQVLWRKAAVHSREWFTYAADKHREYVEIILTPFIDYLGDIK 577

Query: 511  RYIGIANDITEQKKSLEGILCN-------AFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              + +A D+T  + + E +           + D LTG+P+RQ+ L+ +  +       +N
Sbjct: 578  GIMCVARDVTAFRLNEEELERQKLSLRELLYTDKLTGLPSRQAQLEHIEAL-----AANN 632

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               +++ I +++Y ++    G+A+ + +++     I E++         +  RF I++ +
Sbjct: 633  STFSIIGISLNRYSRVISNFGLAMSELLIIKAVSAIAEVIPEGCQFGSSTDIRFSIVVAN 692

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +   +AD A  +   + +P+ + +  + V  SIG AS+ +   ++  +++N  +A+  
Sbjct: 693  VVDPNILADIAKKIIDRMCIPLKIDDATVFVNISIGIASYPTHGNSTDLVIRNTYIALTE 752

Query: 684  AKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            A+   G+ +  F  S          + ++L LA E  +  L Y P + L D  I  +EAL
Sbjct: 753  AEQIDGSAMHFFESSMLTKVQQLQWLDQNLRLAFEKDQFELHYQPKVNLTDNTIHSVEAL 812

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            I+W HP+ GNI   EF+   E   +I  I  +++   A+    W +Q N  P+ I IN++
Sbjct: 813  IRWVHPERGNIRPDEFINRCEANGLIIPIGNWVINTAAQQAAIWCEQGN--PLRIAINLS 870

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
               L D EL   ++   ++   +   + +  +ES ++ N       + + R++   + LD
Sbjct: 871  VSQLADPELICRLRTAQTQ---ASGLLDIEITESCLISNQAGMLEFINQCRELKFGIHLD 927

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIY 919
            DFGT  S LS L  +P   +K +   +    +      +L+S+I MAK +   ++A+ + 
Sbjct: 928  DFGTGYSSLSVLASLPLTNIKLDKIFVQRIGKEGNGEPLLKSMISMAKELGIAVVAEGVE 987

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +     L        Q    A  +  N++   
Sbjct: 988  TQSQADFLKEQRVLMAQGWLYAPAMKANTLNAW 1020


>gi|113969410|ref|YP_733203.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
 gi|113884094|gb|ABI38146.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-4]
          Length = 508

 Score =  357 bits (917), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 102/418 (24%), Positives = 195/418 (46%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT ++           T+++IDI +++ +ND+ G   GD +L   
Sbjct: 83  DKLTGLNNRVGLKRSLTAMM------PITHGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +      +  ++      ++    +P  + +  ++V 
Sbjct: 137 ADRLTSLSLKPKLIARLNGDEFFLYYEQSLSEEQLLHLRGRLQ----VPFKIKDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG           S ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 MQIGCLQLAEHHTDVSHMLRRLDLALKKARATRSAIACYSENDDIRQLRELKIIDSLPSG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + LY+VY P   +       +EALI+W+H + G IS +EF+ +AE   MI  ++ + 
Sbjct: 253 LQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPAEFIPLAECAGMIDLVSNWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++ +  + WR       + + +N++++DL    L   +   +     SP  + +  +E
Sbjct: 313 LEQVLQQQVKWRVAG--ISVCVALNLSTRDLDSETLPNEIATRLEHYKLSPECLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R++G+ L +DDFGT  S L+YL ++P + VK + + +      
Sbjct: 371 STLMADLNKAVDTLEQIRRLGVKLAIDDFGTGHSSLAYLKHLPANEVKIDKAFLRDLEPN 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + +        L  MG D IQ    A P+    + 
Sbjct: 431 KPSEYILEASINIAKKLGYEVTVEGVETIEVHDMLVNMGVDRIQGIVYAKPMRAAELE 488


>gi|325283033|ref|YP_004255574.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324314842|gb|ADY25957.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 654

 Score =  357 bits (917), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 201/431 (46%), Gaps = 20/431 (4%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LT +PNR+S  D L  +   S    +    ++ ID+D +K +ND +G   GD +
Sbjct: 225 MAYHDLLTSLPNRRSLEDELARLTAPS----SPAFALLFIDVDSFKVVNDTMGHDQGDRL 280

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  ++  +           RLSG+ F ++L       + ++ A  ++  IA   +  E  
Sbjct: 281 LQLVSESLSAAAPAQAF--RLSGDEFVMVLPQAGG-EQASELARQLQHDIAER-SDRELG 336

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKE 709
           + ++ SIG + +      + E+L++A+ AMY  K  G   ++ ++    +       I +
Sbjct: 337 LNISLSIGISCFPDDGAAAHELLRHADSAMYAVKREGRGQIKPYQPEQDQATERFQHIAQ 396

Query: 710 DLC--LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +    A +    YL+Y PI  L    IV  EAL++W H + G +S +EF+ +AE++  +
Sbjct: 397 AIGQGHAPQQDGFYLLYQPIYDLRTGRIVKAEALLRWTHAELGQLSPAEFVPVAEQIGQM 456

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + L++LE    +   W        + + +N+++  L   +    ++ +++++  S + 
Sbjct: 457 PRLGLWVLEEACHEACRWPA-----GLRVSVNVSAYQLTRADFAAQVRDILARSGLSSAA 511

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E+  +   ER    L  L ++G++L++DDFG   + L+ L  +    +K + SL
Sbjct: 512 LEIELTETAQLYTDERVEQNLAALDELGVALSIDDFGAGYANLTRLRSLQLSGIKLDRSL 571

Query: 888 MTGS---TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                   E    I  ++  +A +    + A+ +  +  ++ +  MGC   Q   +A PL
Sbjct: 572 TEHLPSGDEFSHLITEAVSALAYHYSLDLTAEGLETQEHVEVVYEMGCSLGQGFALAPPL 631

Query: 945 GFNSILKLLKE 955
               +  +  +
Sbjct: 632 TAPELHAMFAQ 642


>gi|325832020|ref|ZP_08165117.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325486341|gb|EGC88793.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 737

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 96/450 (21%), Positives = 193/450 (42%), Gaps = 31/450 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+P+R +   R+   L           +++VIDID ++  ND  G AVGD ++  
Sbjct: 22  YDALTGLPDRTTLERRIERCLAQKGR----PFSLIVIDIDNFRSFNDAYGYAVGDAIIAR 77

Query: 595 LTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--- 650
             R +   L    +++ R+    +  I+    +              +++ + +      
Sbjct: 78  FGRYLQTSLSTGVEMVGRVGSEEYLAIV----DGADRDVLDGLTSDLLSVRLTIDGEGPS 133

Query: 651 ----EITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                +++TA  G  SW   + +T + ++  AE+A+  AK  G +   +F        R+
Sbjct: 134 GESTSVSLTAGAGVVSWDGEAALTPAALIHQAEVALRKAKQLGRSRRYAFETDDAEFARL 193

Query: 706 M--------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    +  ++  A+E  E    + P+ R  +  IVG EAL +W HP  G +S + F
Sbjct: 194 REDMRLSMELSVEIGDALERGEFEAFFQPLFRPSNGRIVGAEALARWRHPSRGLVSPAVF 253

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   E    I  ++L + E+  R +    D+  +  + +  N +    LD+   + ++ +
Sbjct: 254 IPPLERSGAIVDLDLAIFEQCCRFLRDRLDKGAVI-VPLNCNFSRLHFLDDSFADALKGI 312

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +    PS +    +ES  + + +     + RL + G S+ +DDFG+  S L  L  +P
Sbjct: 313 VDRYAVPPSYLCAEITESAFVEDFDTVIGQVKRLHEHGFSVAMDDFGSGYSSLGMLQNLP 372

Query: 878 FDTVKFNGSLM-TGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK +        ++ +   ++ S+  +AK +   ++ + I     ++ +  +GCD  
Sbjct: 373 IDEVKIDQLFFQRDLSDFRNATVVYSMANIAKVLGLVVVCEGIETAEQVEFVKGIGCDIA 432

Query: 936 QDSHVASPLGFNSILKLLKE---RFPLVKN 962
           Q    + P+   S   LL+      P  ++
Sbjct: 433 QGFFFSRPVDEASFGGLLERALAHEPQKRS 462



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 17/183 (9%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS----DGERQSL--A 410
             T  +D   +       L     ++   +    +     S         D ER     A
Sbjct: 551 VFTGDVDYQGVFYFGASCLATDAGVLLTKMKIDRVNRSGHSHRSLQMAAMDMERLDEGPA 610

Query: 411 VLG----SGDIVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDN 463
           +          +  +D+  D +       +  ILG      +G +  N    +H +D D+
Sbjct: 611 LDQFYGVVPVGIIRYDLSGDMLITYMNQAMFDILGYTKEQFYGEVGANLRMIVHPDDLDH 670

Query: 464 -FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
            ++  ++             +R    D     ++ R   +   +G  +   G+  D+ E 
Sbjct: 671 LYKKSVEMIETGESEPFS--YRFIRRDGSVARVLYRQCNLPGIDGRPV-TQGMYIDLDEA 727

Query: 523 KKS 525
           ++ 
Sbjct: 728 ERY 730


>gi|260773856|ref|ZP_05882771.1| predicted signal transduction protein [Vibrio metschnikovii CIP
           69.14]
 gi|260610817|gb|EEX36021.1| predicted signal transduction protein [Vibrio metschnikovii CIP
           69.14]
          Length = 565

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 108/557 (19%), Positives = 227/557 (40%), Gaps = 15/557 (2%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +    +R         + ++  D         P      G  S ++   + +WL  +H  
Sbjct: 16  LSRHQQRLIHIFDIFSEGIFHMDRYGTMTFYNPSFYQQFGFNSTTIG--LDDWLALVHPL 73

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR      +D  + ++ GR+  E+R R  D ++ W++     ++N +   +  +G   DI
Sbjct: 74  DRIPLEQRVDGHL-HQEGRVTTEYRARTVDGRYVWLLGTA--VTNVDDGEMFMVGSHRDI 130

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +EQKK    +   AF D ++G+PN    L  +           +   T++ I I+  K  
Sbjct: 131 SEQKKMTSFLQQAAFYDVVSGMPNTTKLLRDIDDA-----KRTSPPATLIYIQIEDIKSY 185

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            +     V   +L  +   +  L+     L R+  + F I+L    +   +     ++ +
Sbjct: 186 LNQYSAEVIQHILHHMHNALSNLIHHHSTLYRVRSDDFAILLREPVSDQDLPLLCQSILE 245

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRV 697
             +         +    +IG     S ++++ ++L  A     +A  K R    + + + 
Sbjct: 246 RYSHSAQEQGHLLGDRMNIGVLPHFSEQLSAVQILNIAAQTCQYAGEKSRSRIEIYAGKT 305

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I+  L  A+ +  L + + PII     ++   EAL++W   ++G I   EF
Sbjct: 306 QHTVDRYFFIERGLKEALCHHSLSVKFQPIIHAQTGKVASFEALVRWRSSEFGEIYPDEF 365

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +   + E+  + I  +  Q       + +N++   LL++     ++ +
Sbjct: 366 IPVAEKKGLITELGYQVFEKACQFIHRYHVQHG-SSTRVNVNVSVLQLLNSNFPANIKMM 424

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                  PS I L  +E+V++     +   L  L K+G  L+LDDFG   S +     +P
Sbjct: 425 ADAAGVCPSSIVLELTETVILDGNRHALNQLNTLSKMGFQLSLDDFGAGLSSIYSFFDLP 484

Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + ++   T +       LR I+ + ++    I+ + I      ++  +MG +Y+
Sbjct: 485 LNQIKIDRTMALKTLTNTASEEYLRFIVQLCRSRGMDIVIEGIENSAMQQKFCQMGVNYL 544

Query: 936 QDSHVASPLGFNSILKL 952
           Q    + PL   +  + 
Sbjct: 545 QGYWFSKPLSLATASRY 561


>gi|238793252|ref|ZP_04636879.1| Diguanylate cyclase/phosphodiesterase [Yersinia intermedia ATCC
           29909]
 gi|238727420|gb|EEQ18947.1| Diguanylate cyclase/phosphodiesterase [Yersinia intermedia ATCC
           29909]
          Length = 656

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 93/441 (21%), Positives = 197/441 (44%), Gaps = 18/441 (4%)

Query: 524 KSLEGILCNAFQD--------NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              + +L  A+ D         +T +PNR  F+  L   +      +     ++VI I+ 
Sbjct: 215 NRNQQLLAEAYTDMTRINTRFPVTELPNRPLFMALLEQEIAAGMHAEKFH--LLVIGIET 272

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            ++++ ++       +L+++ +++ + +    +LA+LS   F ++    +        A 
Sbjct: 273 LQEVSGIMSEEQHRQLLLTMAQQLEQCIDENSLLAQLSKTEFAVLARGISRPFPAMQLAR 332

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I  P+     ++  +ASIG   +     T+  +++NA  AM  A H+G N +  F
Sbjct: 333 QIMLQITQPLVFGNMQLRPSASIGITDYQYQDETAESLMRNASTAMMAAHHQGRNQIIVF 392

Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   +  +  + D+  A+EN +  L   P   + D+ ++G EAL++W  P     S
Sbjct: 393 EPHLTEKTQKRLTQENDILQAIENHDFRLFLQPQWNMQDQRVIGAEALLRWPQPDGSYRS 452

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            SEF+  AEE  ++  +  ++LE   R +  W+ Q     + + +NI+   +  ++    
Sbjct: 453 PSEFVPGAEEGGVMMPLGNWVLEEACRILADWKAQGIT--LSLAVNISGSQVQSDQFLPH 510

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +I++    P ++ L  +E+  + N + +  LL  L+ +G+S+ LDDFG   S L YL
Sbjct: 511 LKTIINQYQIDPRQLLLEITETARIQNLDEALGLLRELQGLGLSIALDDFGMGYSSLQYL 570

Query: 874 GY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            +   +P   +K +   +    E    + R I  +++ ++  ++A+ I  +   + L + 
Sbjct: 571 NHLKGLPISMIKLDKCFVKHLPEDD-VMARIIATISEALKLRVMAEGIETDEQRQWLLKH 629

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           G    Q    + PL       
Sbjct: 630 GIYCGQGFLFSEPLPREVFEA 650


>gi|149189626|ref|ZP_01867909.1| GGDEF family protein [Vibrio shilonii AK1]
 gi|148836605|gb|EDL53559.1| GGDEF family protein [Vibrio shilonii AK1]
          Length = 629

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 95/442 (21%), Positives = 192/442 (43%), Gaps = 8/442 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMVIDIDKYKKINDVL 583
               +      D+ T + NRQ   + L       +  D N   +V+ I I   ++I   +
Sbjct: 186 LERQMQYQKNHDSATNMLNRQGLENALEASFNSRAIIDGNAYLSVIFIQITNGERIQARI 245

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG-IILISENNSLKIADFAIAMRKSIA 642
           G    D +L  L ++I +        AR+S        ++   +   + +    + +   
Sbjct: 246 GCDGFDTLLSLLEQKISKNTPHIHYYARISTTELALTTIVPSFDEHFLPNLCRQLSEVAR 305

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFR 701
             +   ++E+ +   +G A+       S++++ NA  A    K  G      +      +
Sbjct: 306 QGMFYRDQEVHLHVFMGVANSY-HTDNSTDLINNAFHAAVSCKESGATVSTFTQADQDEQ 364

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   ++  L  AV N +L L + P I L +++ +G E L++W HP  G+IS+   + +A
Sbjct: 365 KEFNQLEHYLLQAVRNDDLILYFQPKIDLKNDKWIGAEVLLRWKHPVLGDISNEALIHMA 424

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  F+L         W + A  P   + +N+++K +      + +  ++   
Sbjct: 425 EQNGLIVEVGYFVLRSAIDKASEWIEIA--PDFTLSVNVSAKQICSARFADRVLEILENN 482

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + ++L  +ES ++ N E +   + RL+  G+   LDDFGT  +  SYL  +PFD +
Sbjct: 483 ELPSTNLELELTESCLVSNFEVAYQNIVRLKGHGVRFALDDFGTGYASFSYLRKLPFDCI 542

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   ++      +  AILRSII +AK +   ++ + +      + +    CD  Q  +
Sbjct: 543 KIDKEFLSNILHNAQDKAILRSIINIAKKLNKQVVVEGVETSEQHRFVATESCDVAQGYY 602

Query: 940 VASPLGFNSILKLLKERFPLVK 961
            A P+  +     L++++P  K
Sbjct: 603 YAKPMPRDIFEAHLEKQYPPPK 624


>gi|239996533|ref|ZP_04717057.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Alteromonas macleodii ATCC
           27126]
          Length = 747

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 190/438 (43%), Gaps = 19/438 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K     I   A  D LTG+ NR        + L        +  TV+      ++ IND+
Sbjct: 319 KSRENHIRYQAEHDVLTGLFNRNYVEGFFESQLQEERELQVVAITVI-----GFRTINDL 373

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G + GD+ L +L  R+          ARL+G     I     N  ++      ++  + 
Sbjct: 374 YGYSNGDNTLKALAERLQRWP---GTSARLAGGEILYITQDSLNDDQLET----LKHILE 426

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFR 701
            P+      I V  ++          TS E+ +   +    A H     V          
Sbjct: 427 QPVESNLIAIPVKVAMAVIQCPQDATTSEELFRKMNIVTDEAIHSDSWCVRYRTELEDKY 486

Query: 702 SDRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + R+ I  +L  A   + +EL +VY P I L   ++  +EALI+W++   G +   EF+ 
Sbjct: 487 NRRLSITTELKRALASQQNELSMVYQPKIDLQTMKVCSMEALIRWNNSVLGFVPPDEFIT 546

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I+ +  +++++   D+  +R         + +N++++D+ +  L   + +L++
Sbjct: 547 IAEQAGLIEQVTTWVMKQTISDLAYFRGMGYG--FTVAMNLSTQDIQNKVLLGKLVSLLT 604

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  ++L  +ES ++ +   +   L  L   G    +DDFGT  S L+YL  +P  
Sbjct: 605 QEGLSPEALELEITESDLVADASLAIENLNELTARGFHFAIDDFGTGYSSLAYLKNLPVK 664

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S +      E    I+ +++ +A      ++A+ +     ++ L   GCD +Q 
Sbjct: 665 TIKIDKSFILSLASDENDQQIVHTVLSLANVFNLKVVAEGVEDVASLEILKDWGCDIVQG 724

Query: 938 SHVASPLGFNSILKLLKE 955
            +++ PL  + +   L+ 
Sbjct: 725 YYISRPLSRSDLEDWLQN 742


>gi|23011596|ref|ZP_00051909.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 527

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 206/430 (47%), Gaps = 10/430 (2%)

Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A       +    +  +LA   +  S D +   D  +      P    + G  +  + G 
Sbjct: 102 ALKERDAALLRSRKDLNLARKVIEASLDGIMIVDANQRVEFVNPAFTHMTGYEAEEIIGK 161

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             N L   H +D  +F   + + +  +    Q E   R  + + +   + I  + + +G+
Sbjct: 162 NPNVLKSGHHDD--DFYKHMYTVLDAQ-DYWQGEIWNRRKNGEIYPEWLTINVIRDESGE 218

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           + +Y  I +DITE+KK+ E I   A+ D LT +PNR+ F DRL   +  +      +  +
Sbjct: 219 LTQYAAIFSDITERKKTEERIKNLAYFDVLTALPNRRLFTDRLQIAIANAHRHGQ-QLAI 277

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           M +D+D +K+IND LG  VGD VLV    RI   ++  D +ARL G+ F ++L   ++  
Sbjct: 278 MFLDLDLFKRINDSLGHGVGDQVLVETAARISHCVREGDTVARLGGDEFTVLLPEIDHME 337

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             A  A  +   +  P  + + E+ VT SIG A +     +   ++KNA+ AMY AK  G
Sbjct: 338 DAAKLAERVIAHVKQPFVVDDNELYVTTSIGIAVYPEDGDSVEALIKNADTAMYRAKDLG 397

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N  + +   +++   +R+ ++  L  A+   E  LVY   +   D  + G+EAL++W H
Sbjct: 398 RNSFQLYTPAMNARSFERLTMESSLRHALVRDEFRLVYQVKVDSEDGRMSGVEALVRWHH 457

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +S  +F+ +AE + +I  I  ++L    R    W D      + I +N+++   +
Sbjct: 458 PEMGLVSPVDFIPLAENMGVISDIGEWVLRTACRQCKHWMDLGLTT-VRIDVNVSAHAFV 516

Query: 807 DNELCEGMQA 816
           ++++ E + A
Sbjct: 517 EHDVAEVVAA 526


>gi|332707051|ref|ZP_08427110.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332354184|gb|EGJ33665.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 467

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 109/424 (25%), Positives = 203/424 (47%), Gaps = 13/424 (3%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N  SF  RL  ++  S      R  V+++ ++++K I   +G  VG  +L +   R+ +
Sbjct: 31  LNADSFRRRLRQVIQRSKWYKGYRFAVLLVALERFKVIQFSMGRQVGAKLLKAFDSRLTD 90

Query: 602 LLKF------PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            L           +AR S +   I+L   N+  +    A  +  S+  P ++ + EI ++
Sbjct: 91  ALNSTVNYTVNYTVARWSEDELAILLKDINDVSEATLVAEQIGTSLRTPFSIDDHEIFLS 150

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCL 713
           A+IG AS       +S  L NA LA+Y AK       + F   + +   +R+ +++ L L
Sbjct: 151 ANIGIASNDRDDYQASAFLDNASLALYRAKMESNTGYKLFTPAMRTRSIERLELEDSLRL 210

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++  EL L Y PI+ L   ++ G EAL++W+HP+ G +  +EF+ +AEE  +I  +  +
Sbjct: 211 GIKREELRLYYQPIVSLETHKLAGFEALVRWEHPERGLLLPAEFIPVAEETKLIVPLGWW 270

Query: 774 MLE-RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +L     +     +       + I +NI+S  L   +L   +  ++  +      +KL  
Sbjct: 271 VLRQACQQMWQWQQQFPQYQDLTISVNISSLQLSQPDLIGKIDTILWDSGLDAQSLKLEI 330

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES+++         L +L++  I L +DDFGT  S+LSYL  +P D +K + S + G +
Sbjct: 331 TESLLLETTAVVL--LEKLKQRQIQLCIDDFGTGYSVLSYLPNLPIDILKIDRSFVKGMS 388

Query: 893 EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +      ILR ++ +A ++   ++A+ +  E  + +L    C Y Q    + PL   +  
Sbjct: 389 DDHKHGEILRWMVKLANDLGIDVVAEGVETEKQLAQLCDWRCQYGQGYWFSKPLNPEATE 448

Query: 951 KLLK 954
             L+
Sbjct: 449 AWLE 452


>gi|114046644|ref|YP_737194.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
 gi|113888086|gb|ABI42137.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. MR-7]
          Length = 508

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 102/418 (24%), Positives = 195/418 (46%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      LT ++           T+++IDI +++ +ND+ G   GD +L   
Sbjct: 83  DKLTGLNNRVGLKRSLTAMM------PITHGTLVLIDIYRFRYVNDLFGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +      +  ++      ++    +P  + +  ++V 
Sbjct: 137 ADRLTSLSLKPKLIARLNGDEFFLYYEQSLSEEQLLHLRGRLQ----VPFKIKDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG           S ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 MQIGCLQLAEHHTDVSHMLRRLDLALKKARATRSAIACYSENDDIRQLRELKIIDSLPSG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + LY+VY P   +       +EALI+W+H + G IS +EF+ +AE   MI  ++ + 
Sbjct: 253 LQRNHLYMVYQPKQDIHTGACTQVEALIRWEHEELGFISPAEFIPLAECAGMIDLVSNWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++ +  + WR       + + +N++++DL    L   +   +     SP  + +  +E
Sbjct: 313 LEQVLQQQVKWRVAG--ISVCVALNLSTRDLDSETLPNELATRLEHYKLSPECLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R++G+ L +DDFGT  S L+YL ++P + VK + + +      
Sbjct: 371 STLMADLNKAVDTLEQIRRLGVKLAIDDFGTGHSSLAYLKHLPANEVKIDKAFLRDLEPN 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + I +AK +   +  + +        L  MG D IQ    A P+    + 
Sbjct: 431 KPSEYILEASINIAKKLGYEVTVEGVETIEVHDMLVNMGVDRIQGIVYAKPMRAAELE 488


>gi|15600851|ref|NP_232481.1| GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|121590636|ref|ZP_01677971.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|153212864|ref|ZP_01948481.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|153801236|ref|ZP_01955822.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|153819225|ref|ZP_01971892.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153823628|ref|ZP_01976295.1| GGDEF family protein [Vibrio cholerae B33]
 gi|153825721|ref|ZP_01978388.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|153828980|ref|ZP_01981647.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|227811707|ref|YP_002811717.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229506746|ref|ZP_04396255.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229510459|ref|ZP_04399939.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229514588|ref|ZP_04404049.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229517410|ref|ZP_04406855.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229527934|ref|ZP_04417325.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229605220|ref|YP_002875924.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254284805|ref|ZP_04959772.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|254850345|ref|ZP_05239695.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255746095|ref|ZP_05420042.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262162067|ref|ZP_06031082.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|298499944|ref|ZP_07009750.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9657465|gb|AAF95994.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547529|gb|EAX57634.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|124116242|gb|EAY35062.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124123254|gb|EAY41997.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|126510217|gb|EAZ72811.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126518848|gb|EAZ76071.1| GGDEF family protein [Vibrio cholerae B33]
 gi|148875511|gb|EDL73646.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|149740560|gb|EDM54671.1| ggdef family protein [Vibrio cholerae MZO-2]
 gi|150425590|gb|EDN17366.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|227010849|gb|ACP07060.1| GGDEF family protein [Vibrio cholerae M66-2]
 gi|229334296|gb|EEN99781.1| GGDEF family protein [Vibrio cholerae 12129(1)]
 gi|229345446|gb|EEO10419.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229348568|gb|EEO13526.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229352904|gb|EEO17844.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229357097|gb|EEO22015.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229371706|gb|ACQ62128.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|254846050|gb|EET24464.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|255735849|gb|EET91247.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262028142|gb|EEY46800.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|297541925|gb|EFH77976.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 607

 Score =  357 bits (916), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 96/438 (21%), Positives = 190/438 (43%), Gaps = 19/438 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      DNLTG+ NR    ++LT ++     +D    T+  +DID+++ IND+ G  +
Sbjct: 175 QLRHEISHDNLTGLMNRNDLAEKLTALV----QEDRHHFTLAFLDIDEFRSINDLHGHYL 230

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +   I + +       R++ + F  +        +       +   +A     
Sbjct: 231 GDLVLKFVADAIKQAVPEEGYAFRIAADEFAFL----TTDREPMKICQTILNKLAQDYID 286

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            +R + ++ SIG   ++  K+ + ++L NA LA+   K      +  +            
Sbjct: 287 QDRRLKISVSIGITKYSGEKLNADQLLFNASLALKECKRNHNTRIRFYDNLLSNQYYRRT 346

Query: 707 -----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ +L   +  +ELY+V  PI++         E L +W+    G ++  EF+  A
Sbjct: 347 QIIEALRSELSKPIHQTELYVVVQPIVKKHQRNWDYFEILTRWNSSTLGVVTPLEFIEAA 406

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISK 820
           E+  +I      +LE          +Q     I + IN ++ +L  +    E +   I  
Sbjct: 407 EQSGLIVEFGERILELAC-IAKQELEQGIDQKIRLSINCSADELTHSNRYLEHLLKTIKA 465

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +      +  +E+V++        +L  LR++G  + LDDFGT  S L+Y+   P D 
Sbjct: 466 YGFQADEFTIELTETVLLSKAAEVCSILTILRELGFKIALDDFGTGYSSLNYIHSYPIDC 525

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + +      +   +I+  II +A  ++  ++A+ +  +  + +L +MGC+ IQ  
Sbjct: 526 IKIDAAFVRNLLTNQTSESIVWLIIQLANQLKLDLVAEGVENQQALDKLYQMGCEQIQGY 585

Query: 939 HVASP-LGFNSILKLLKE 955
           + + P L    I +  KE
Sbjct: 586 YFSRPDLPSVMIERWRKE 603


>gi|126734524|ref|ZP_01750270.1| GGDEF family protein [Roseobacter sp. CCS2]
 gi|126715079|gb|EBA11944.1| GGDEF family protein [Roseobacter sp. CCS2]
          Length = 643

 Score =  357 bits (916), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 107/452 (23%), Positives = 198/452 (43%), Gaps = 18/452 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++ + E +   AF D LTG+PNR  F DRL+ +L        L        +D +K+IN
Sbjct: 197 ARQAAEERVRHLAFFDPLTGLPNRVQFQDRLSELLAQKTALALLLVD-----LDGFKQIN 251

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G A GDD+L  +   +G          ARL G+ F ++ ISE +   ++     +  
Sbjct: 252 DTYGHAAGDDILRHVAAALGPYRTPDGGFAARLGGDEFAVVCISE-DIPLLSQICDDVIA 310

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKI----TSSEMLKNAELAMYHAKHRGGNHVESF 695
           +IA PI      + V ASIG A+ T        T   + + A+ A+Y +K  G      +
Sbjct: 311 AIADPIVFEGEAVGVEASIGLATKTQIGRQVAHTVDGLTRVADFALYASKSNGKRQFTIY 370

Query: 696 RV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                    +R  + E+L  A+ +  L     P + +  EE+ G EAL +W       + 
Sbjct: 371 DEVLEHQFLERRAMVEELPQAIADGSLDYYLQPKVDMTTEEVFGFEALARWRR-NGVIVP 429

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            S F+ IAEE  +I  I+  +L    RDI ++    +     I +N ++      +  E 
Sbjct: 430 PSAFIGIAEESGLIADIDCSILSNATRDIANFN-LCHGTSFSISVNFSTLHFSSLKFVET 488

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  +  +   P  + +  +E+  M +  +++ ++  +  +G  +++DDFG   S L+YL
Sbjct: 489 VKHALLASGLQPDLLTIEITETAEMQDWGKAKQVVSAIHDLGAKVSIDDFGAGFSSLAYL 548

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                D +K + SL+     ++    +L +++ +A+N+      + I        +  MG
Sbjct: 549 RTTVADEIKIDRSLVQDIETSDTSRFLLDAVLDIARNLGLDATVEGIETRRQADIVLEMG 608

Query: 932 CDYIQDSHVASPLGFNS-ILKLLKERFPLVKN 962
               Q    + P+  +  +   +    PL++ 
Sbjct: 609 ARKAQGYFFSRPMPRDDALAAAMTTDQPLLQR 640


>gi|313906569|ref|ZP_07839897.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313468599|gb|EFR63973.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 730

 Score =  357 bits (916), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 182/440 (41%), Gaps = 15/440 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T +    + +      D LTG+ +   F  R+  +L       ++   +   +I+ +K I
Sbjct: 297 TMRADHEKTVRKLVDHDPLTGVLSMNGFRKRVKELLT---EHPDISYAIAYNNINDFKFI 353

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG   GDD+L     R   +L   + + R   + F ++     N   +A     +  
Sbjct: 354 NDSLGKEAGDDLLRFWAERTRMVLTDEEAVGRAESDHFVVLRKVGGNI--VASDEKLVID 411

Query: 640 SIAMPINLLEREITVTASIGF-ASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFR 696
            +        +++ V  S G                M+  A +     + +G +  E + 
Sbjct: 412 PVRNYFIDQGKDLRVYLSTGIYVVMPEDYKDPDVDHMIDLARVVEKKVREKGKDGCEFYN 471

Query: 697 VSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +        +   L  A+  +EL + Y P +    +EI G EAL +W H K G I  
Sbjct: 472 QEQWEKEKWIADLVGHLRTAIRTNELRIWYQPQVDFETKEISGAEALCRWKHAKLGCIPP 531

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEG 813
           SEF+   E+   I  ++ ++ +++ +D+  W ++     + + +N++  D+ D   L + 
Sbjct: 532 SEFIPALEDSGSIYELDCYVWDKVCQDLHRWNEKGKH--MTVSVNVSRCDIHDNQNLADH 589

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              LI K   +P ++K+  +ES  + +      +   L   G  + +DDFG+  S L+ L
Sbjct: 590 FHGLIEKYDLTPDQLKIEITESAYVEDSSLLIKITQELNNYGFQVEMDDFGSGYSSLNML 649

Query: 874 GYIPFDTVKFN-GSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P + +K +   L      ++   I+  +I MA+ +   IIA+ +      + L  +G
Sbjct: 650 KEVPVNRIKLDLRFLTEDGDPEKGRIIIECMIHMARALGMDIIAEGVETVEQAEFLNALG 709

Query: 932 CDYIQDSHVASPLGFNSILK 951
           C  +Q  +   P+  N   +
Sbjct: 710 CTEMQGYYFFKPMPANEFEE 729


>gi|254508958|ref|ZP_05121065.1| biofilm architecture maintenance protein MbaA [Vibrio
           parahaemolyticus 16]
 gi|219548133|gb|EED25151.1| biofilm architecture maintenance protein MbaA [Vibrio
           parahaemolyticus 16]
          Length = 767

 Score =  356 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 110/474 (23%), Positives = 216/474 (45%), Gaps = 27/474 (5%)

Query: 503 SNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +++ +I R      D+  E   S +     A  D+LT + NR  F   +   +     D
Sbjct: 292 LSADNEIGRLSVRFYDMYKELNSSYQKTKAMAENDHLTQLANRYQFQMFVERTIANKLID 351

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSG 614
              R  ++ ID+D +K +ND  G  +GD +LV+    I +             + ARLSG
Sbjct: 352 --TRAWILYIDLDNFKYVNDKYGHHIGDSLLVNFAEHIRQRCNEFELKYSVKCLAARLSG 409

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE----ITVTASIGFASWTSSKITS 670
           + F + + S N   + + +A  + +++  PI            +TASIG AS+       
Sbjct: 410 DEFAVFISSVN---QHSSYAPEIARAVLEPIQNSANSPLGNFPITASIGIASYPEDGRDL 466

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPII 728
           + +L +A+ AMY AK  G N +  +     +  R    ++  L  +  + E  L+Y P  
Sbjct: 467 TSLLSHADTAMYQAKRAGKNQIAHYSKELDQIVRRRSQVERALRSSNLDQEFQLLYQPYF 526

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                E+ GLEAL++W+ PK G ++ SEF+ I+E++ +   I+ +++++   D  + ++ 
Sbjct: 527 DRSGLEVRGLEALLRWESPKLGTVNPSEFIPISEQIGLFGTIDRWVVKQAFEDFSAIQNC 586

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
               P+ + IN++S +L   +L + +Q +  +    P  I    +E+    +       L
Sbjct: 587 F-DWPVQLSINLSSAELDSLQLAQYIQTMAERYSVRPDLIDFEITETFASDSQSYLL--L 643

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAK 907
             L ++G  LT+DDFG+  + ++ L   P   +KF+   +   T+     +++ ++ +  
Sbjct: 644 YELSQMGFKLTIDDFGSGYTSITQLVEYPVQKIKFDREFLEALTKTNNQTVVKPLVDLCH 703

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           +    + A+ I  +   + L    CDY+Q  +++ P+        L++     K
Sbjct: 704 SQSMLVTAEGIESKEMHQWLANNQCDYMQGYYLSPPISIEQ----LRQHNKKSK 753


>gi|332533413|ref|ZP_08409278.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037122|gb|EGI73579.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Pseudoalteromonas haloplanktis ANT/505]
          Length = 638

 Score =  356 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 203/438 (46%), Gaps = 14/438 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +   E I+    +DNLT + NR SF+  +   LDL+  +D+++  V+ +D+D +K IN
Sbjct: 209 EVQLRTEQIISLEQKDNLTKLFNRGSFVSNVE--LDLANQNDDIK-AVLFLDMDDFKIIN 265

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD VL    +R+ E     D +A R  G+ F I     N   ++ D    + K
Sbjct: 266 DKYGHDFGDFVLAQTGKRLVETQTQGDFIACRWGGDEF-IFYSRTNTEDELFDCVFRLVK 324

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++   +++   ++  +  +G   +T      +E +K A++AMY  K    N +  F    
Sbjct: 325 TLTKTVSMDSYQVNPSFKVGL-YFTRENFNLAEAIKYADVAMYEGKKS-RNEISVFDERM 382

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             S +    ++  +   VE  + +L Y PI+ +   EI   E L++W       I  SEF
Sbjct: 383 HESLKREEVLRSSIKECVEKGDFHLCYQPIVDISTNEITTFEVLLRWQFND-EFIPPSEF 441

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE    I  +  F+LE+    +           I + IN++   L ++   + + AL
Sbjct: 442 IDIAERYGKINILGEFVLEQAIASLSKLN--TVNSNIGLSINVSVLQLENHNFLDFLVAL 499

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++    P  + L  +E+V++ N      ++  ++  G+ +++DDFGT  S +S L  + 
Sbjct: 500 LNRYAVKPYNVHLEITETVMIKNLPYLSKVITAIKNTGVRISIDDFGTGFSSISVLKELS 559

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    E  K  +I+ ++  M+  I   +IA+ +     +  L  +  D  
Sbjct: 560 VDYIKIDKSYIDNICECSKDKSIVSAVTNMSHMIGCQVIAEGVENPAQLTLLQSLEIDKY 619

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    + P+ F+  L L+
Sbjct: 620 QGFIFSKPVRFDQALSLI 637


>gi|297584317|ref|YP_003700097.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297142774|gb|ADH99531.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Bacillus selenitireducens MLS10]
          Length = 853

 Score =  356 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 106/570 (18%), Positives = 235/570 (41%), Gaps = 18/570 (3%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           ++L     + +VL     S  +     +    +    ++V  +D   +   T       L
Sbjct: 294 ILLQLSHFLLNVLERKRISDDLSHSNRQLQTIMDSQSELVCKFDRDCNLSFTNRAFQQTL 353

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              + S    + +   Y+     +  +  ++  V   + +         AD     +   
Sbjct: 354 --QAKSEEQDLSHLSSYMDEESFETLKEHINMLVETGQPKTLRISAYGHAD--TLIIEWN 409

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           +      +G +  +I +  D+TE++K    ++  A+ D LTG+ NR  F   L       
Sbjct: 410 VYVTRYHDGAVSEFISVGYDVTEKEKLENQLVYMAYHDQLTGLLNRYGFERSL------L 463

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
            ++ +    ++++DID +  +N + G A GD++L+     +  L+     ++R+S + F 
Sbjct: 464 ESESSGACHLIMLDIDDFSMLNTIYGSATGDNILIETGHILNSLVSSNGFVSRISSDEFM 523

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + L S N+      F  ++ + +            +  S+G+  +  S  +  +    A 
Sbjct: 524 VCLNS-NDLWHDQHFLNSLEERVHHSFEGGSIPQFLHFSVGYTLFDPSAHSFEKAYHEAT 582

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+  AK  GG  + ++    +   +    I++ L   ++ +E  + Y   +     ++ 
Sbjct: 583 LALKSAKESGGAAIHAYMNWMYLDLQRINDIQKGLRNGLKENEFRMEYQQKMNNTSGKVT 642

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL +W+    GN+   EF+ +  +   I  ++ + + R+  D+   + +     I +
Sbjct: 643 GVEALARWESKLLGNVGPGEFIPVFSKSEAIDLLSEWSINRVFHDLPELKAKYGA-DIKV 701

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++ + LL  +  + +  +  +       + L  +E V + +      LL  +R  G 
Sbjct: 702 SINLSPRVLLKKDFSQWLNNMRKRHKIDRDTVMLEITEDVFLEDLNLVNNLLRSIRDNGF 761

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTII 914
            ++LDDFG+  + LSYL  +  D VK + S+          ++   +II +A+      +
Sbjct: 762 LISLDDFGSGYASLSYLQNMLIDEVKIDKSITDQVLTNDKHLVLLNAIIKIAEAFHIAPV 821

Query: 915 AKDIYGEIDIKELTRMGCDY-IQDSHVASP 943
            + +  E  +K L  +G D+ +Q   +  P
Sbjct: 822 IEGVESENQLKLLQELG-DFDVQGYLLHRP 850



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 3/125 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           + +  V  S D++   D   D +         LG                 H +   + +
Sbjct: 12  QFADLVEQSSDLIQCADKNGDFLYVNQSWCNTLGYTKKEALT--LTVEDVFHPDSVAHCK 69

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
           +I    +       + E        +   +   I    + +G+         DIT++K+ 
Sbjct: 70  SIFKRVLAGLSVG-EVEAAFITKSGERLDVQGYIDSKWDDSGNPCYTRATFRDITDKKRL 128

Query: 526 LEGIL 530
            +   
Sbjct: 129 EKQNE 133


>gi|149927389|ref|ZP_01915644.1| diguanylate cyclase/phosphodiesterase [Limnobacter sp. MED105]
 gi|149823881|gb|EDM83106.1| diguanylate cyclase/phosphodiesterase [Limnobacter sp. MED105]
          Length = 943

 Score =  356 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 117/815 (14%), Positives = 287/815 (35%), Gaps = 44/815 (5%)

Query: 157 AVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSS 216
             V    +   P   +I L         +      +  + GV  L+   + +   + RS+
Sbjct: 129 QGVLCQFKFIGPASLEIGLQTSADLNKAILISERRQSFLEGVLYLMIGMVAVAAFMTRSA 188

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA---LSSSLIIFLFMYL 273
           + +      +  L  +++  G+   +         + RA         +S+++I   ++ 
Sbjct: 189 LFVSYGFWLFASLRLVALSEGWDHSIFGFDLKSDPLMRARMLALAMYFTSTVLIVWHLFE 248

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIY--HGM 331
           +  R       +  +      +L  ++ + P  T       ++ +      +++      
Sbjct: 249 NIRRES--WLGVLRALQCASVLLTVLALFSPYRTFLELFWPISLVAASAVAWVVIQNFLE 306

Query: 332 KGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVL 391
           K    A+  + A ++     +   ++        ++Q      + ++  ++    +   L
Sbjct: 307 KRDRVAIYYLAAMLISLTGAVAEVLS-AWFDQRFLLQYFNSASVTVLASVMTAVALAEFL 365

Query: 392 A-----TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
                     +Q I    ER       +   ++      + +        +         
Sbjct: 366 RKTQWQQQQAAQEIKQAHERLESIFDIAPSAMFTCTRHGELIHFNKQFTNLF---LNREG 422

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
            P  ++L       +      L + +       + E  V +A+ Q  W       + + +
Sbjct: 423 TPTLDFL-------QSQRLAALFNLLEQPGKSSRRELPVVSAEGQTRWYE----LVVSRD 471

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 +G+  D T +K     +   A  D LTG  NR+     L  I+           
Sbjct: 472 HR--ELVGVVADFTARKDRELALQYQATHDELTGALNRRG----LQNIIHNKLNRRTASF 525

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
           T   ++I ++ ++    G+AV D +L +    +   +     ++RL  ++F I++   + 
Sbjct: 526 TFFCVEIQQFSRLISAYGLAVSDQLLQAFHTELYRHMSTHGEISRLHIDQFAIMIHPNDT 585

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                 F   + +  ++P     R I  T  +    +        ++++  E++M  +K 
Sbjct: 586 ERAEEAFNAFLHRLDSVPFQFDGRCIQTTV-LATLVFQGLVDNVLDVMETVEMSMRESKL 644

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE------LYLVYHPIIR-LMDEEIVGLE 739
           +   + +  RV   ++    + +         +      L L + PI+        +  E
Sbjct: 645 KAKRNSKVERVVFEQNQTRSLLDQSRTIRRLDDQKLPTGLTLAWQPILALNECNGPLYAE 704

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++         S+   +   E       ++ ++L      +     Q +   + + IN
Sbjct: 705 ALLRIKDENGKLGSAGFLIEACERGGHTAFLDNWVLSHTLDFLAKHAQQLDKLSV-LSIN 763

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++   L D    +   ALI       S++ L  +E   + N +  +  + ++R +G+ + 
Sbjct: 764 VSPGSLNDEIFLQDTLALIRAHQQHASKLCLEITEVGSVINLQAVQNFIEQVRGLGVRIA 823

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFG   S   Y   +  D +K +GS++     + +  A++ +I+ +A ++    +A+ 
Sbjct: 824 LDDFGAGYSNFRYAMDLHADVIKIDGSIVKNICHSTESHAVVTAIVGLAHDLGCKCVAEW 883

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +     ++E+  +G DY+Q   V+  +     L L
Sbjct: 884 VEDLHTLREVKELGVDYVQGYLVSPAVECERFLGL 918


>gi|149186880|ref|ZP_01865190.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Erythrobacter sp. SD-21]
 gi|148829547|gb|EDL47988.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Erythrobacter sp. SD-21]
          Length = 660

 Score =  356 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 107/453 (23%), Positives = 202/453 (44%), Gaps = 10/453 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +   + I  +     K+    +  A +D L+G+ NR   +  +   L           
Sbjct: 196 GLVRGQLAITRERNRAVKAELEAIKRAEEDVLSGLANRGKLVREIEENLVRGPATGGGSV 255

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            + + D+D +K  ND  G A GD++L    RR+ +      ++ARL G+ F I       
Sbjct: 256 -LAICDLDGFKSANDAFGHAAGDEILREYARRLSKAFSDNALVARLGGDEFSIFWKDGLP 314

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK- 685
            LK+   A  + +    PI+   +E+ V AS G         ++ E  + A+ A+Y AK 
Sbjct: 315 RLKLERAASQICELANQPIDWDGKELLVGASCGVTEAGPFTWSNQEFFRQADAALYKAKA 374

Query: 686 -HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             RG  ++           R  I++ +       E+ + + PI  L     V  EAL +W
Sbjct: 375 SSRGRWYLYDQPQFQADQRRAKIEKSILSGEALHEIDIHFQPIFDLEKGIPVFAEALARW 434

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +  + G +   EF+ I+E+L +I  +N  +LE+       W +      + +  N+++  
Sbjct: 435 NSTELGVVLPDEFIRISEKLGVIDQLNEHLLEKALASAEEWPES-----LSLSFNLSALQ 489

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L      E +  L+  +   P R++   +E+ ++ + + +   L +L ++G ++ LDDFG
Sbjct: 490 LSRPLATERLYKLVLGSTLPPQRVQFEVTETAILSDLDHAEQELAKLSELGFTIALDDFG 549

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  + ++YL  +PFDT+K +G+L+     +E+   IL  ++ +        +A+ I    
Sbjct: 550 SGYASVAYLRQLPFDTIKLDGTLIDNVFDSERSRQILLGLVDLCHAAGARCVAEHIETYE 609

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     MGCDY Q   +  P   + +LK+L  
Sbjct: 610 QLSLAQAMGCDYGQGFFLGKPTSSDRMLKMLNS 642


>gi|302671206|ref|YP_003831166.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395679|gb|ADL34584.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 848

 Score =  356 bits (915), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 103/438 (23%), Positives = 201/438 (45%), Gaps = 15/438 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            K +   +   A  D L+ + NR++ ++ L  IL       + +  +M+IDID +K IN+
Sbjct: 407 LKNTGSKLKYQADHDELSDLLNRRAIVETLGRILQK-----DEKYAIMMIDIDGFKVINE 461

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G  + D ++  L + +  L +     + R  G+ F +++      +   +    + + 
Sbjct: 462 NYGHVMADQIIKHLAKELKNLAEEQKWQVGRYGGDEFIVMVPDVKLDVDSKEV-RQILEI 520

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              PI   E  + ++AS+G ++         + + NAE+AMY AK  G N    +     
Sbjct: 521 FREPIVAGEETLALSASVGVSNS-DGASNPEQHIINAEIAMYEAKEHGKNTAFVYADEMQ 579

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R  +    +K  +  A + +  Y+VY P I     + +G EAL++  + + G  +   F+
Sbjct: 580 RKIQEENRLKALVTEAFDENLFYMVYQPKIETATGKTIGFEALVRARNIQSGPST---FI 636

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I E+   +  +   + E++ R +  WRDQ     I I IN +SK + D      ++ L+
Sbjct: 637 PIIEKNGWVIRLGRMVTEQVIRQMALWRDQGKEL-IPISINFSSKQVNDLGFMNFIKMLM 695

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   S   I++  +ES+++    +++ L    + +G  + +DDFGT  S L YL YIP 
Sbjct: 696 DQYDISHKFIQIEITESLLIEQNIQTQKLFDEFKDMGFRILMDDFGTGYSSLGYLIYIPI 755

Query: 879 DTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K + SL+       +   +  +I +  +I  TII + +  +   + L     D +Q 
Sbjct: 756 DEIKLDKSLVDAYLVPGKDNFIGDVIKLVHDINKTIIIEGVEEKWQYERLREFKADAVQG 815

Query: 938 SHVASPLGFNSILKLLKE 955
            + + PL  +  +K + +
Sbjct: 816 YYFSKPLEADEAIKFMAQ 833


>gi|254423463|ref|ZP_05037181.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
 gi|196190952|gb|EDX85916.1| GGDEF domain protein [Synechococcus sp. PCC 7335]
          Length = 690

 Score =  356 bits (915), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 109/494 (22%), Positives = 217/494 (43%), Gaps = 58/494 (11%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +   K       NA  D LTG+PNR  FL RL   + L+  + N +  V+ ID+D +K +
Sbjct: 197 SALLKREATSRHNALHDPLTGLPNRSYFLQRLEQSVQLTQRNSNHQYAVLFIDLDSFKPV 256

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VGD +L  +  RI  LL+  D++ARL G+ F ++L       +       ++ 
Sbjct: 257 NDTLGHEVGDQLLTHVANRIKRLLRKSDLVARLGGDEFAVLLDDIAGKNEAITAVRRIQW 316

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---- 695
            +  P  +  R+++++ASIG A        +  +L++A+ AMY AK       +      
Sbjct: 317 HLEQPFTVANRQLSISASIGIALSQLGYQQAESVLRDADTAMYQAKRLAKERSQMEINLQ 376

Query: 696 -----------------------------RVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
                                         + S    R+++++DL  A+   +  L Y P
Sbjct: 377 LNHLEEQASSPIVVQETNHNAQQFVVFDSHIKSRTQARLILEDDLRQALIRGQFRLHYQP 436

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW- 785
           I  L  +++  LE L++W+HP+ G + ++EF+ IAE++ +++ ++  ++++  + ++ W 
Sbjct: 437 IFELKTQQLAALEGLLRWNHPRKGWVCANEFIHIAEQIDVVRQLSPSLIDQACQQLVKWG 496

Query: 786 ----------------------RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
                                 R       + + +N+++  L   +L    Q+ + K   
Sbjct: 497 VSADSYAGSDRAYSLQNLTNKERSPHIASDLKLHLNLSASQLRSPQLVPLWQSALEKHQL 556

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           + SR +L   ES+++         L  L+ +G++L +D FG      S L  +  +++K 
Sbjct: 557 NGSRFQLEIDESLLLTEETTIAANLKALKALGLNLCIDGFGKGHFSFSRLHQLEVNSLKI 616

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +      +  + +L++I    ++   T+I   I     ++ L  +     Q + +A
Sbjct: 617 DPVFVAQAFDHKDNVDLLKTINDFGRSANITVIGSGIETTQQLELLISLDYQLGQGNWLA 676

Query: 942 SPLGFNSILKLLKE 955
           + L    I K + +
Sbjct: 677 NALASEHIDKAISK 690


>gi|317485169|ref|ZP_07944051.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923704|gb|EFV44908.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 750

 Score =  356 bits (915), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 92/437 (21%), Positives = 181/437 (41%), Gaps = 10/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   + I   A+ D LTG+ N   F      +L      D L   ++ I++  +K  NDV
Sbjct: 311 RGYQKEIYALAYTDKLTGVRNFTKFRQDGEGML---QAPDGLPCALLSINMLNFKIYNDV 367

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G + GD +L +  R +      P ++AR+  + F ++        ++  +  A  +++ 
Sbjct: 368 MGYSEGDALLKAFARILEREAPRPVLVARMLADAFLVLFPY-KGKGELVTYCEAYSRALN 426

Query: 643 MPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             I   E+   +    G            + +L  A +A+   K +G    + +  +   
Sbjct: 427 GFIVSREQNYQLELRSGICCVEDSDASDINSLLDRANMALKTIKVKGAAQWKFYDHTMRD 486

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  ++  +  A+ + E  +   P   +    + G EAL++W  P  G +S  EF+ 
Sbjct: 487 KLLREKDLEIRMEKALADGEFLVYIQPKYWVGTRALAGGEALVRWKSPDQGFLSPGEFIP 546

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+   I  ++ FM   +   +  W D    P   + +N++       +  E    + S
Sbjct: 547 LFEKNRFIVKLDQFMFTSVCGLLRQWLDAGIEPR-PLSVNVSRMQFHTPDFVERYIRIKS 605

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           + +     ++L F+ES+   N       +  LR+ GI  ++DDFG   S L+ L  +P  
Sbjct: 606 QYVIPDGLLELEFTESIFFDNVALLSSAVHELRRAGIKCSIDDFGAGYSSLNVLKALPVS 665

Query: 880 TVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G     + +   A  ++R+I+ MA  ++   +A+ +     +  L   GCD IQ 
Sbjct: 666 VLKLDGMFFRTAKDDEQAKIVIRNIMRMAGELKMATVAEGVETHEQVAFLETTGCDIIQG 725

Query: 938 SHVASPLGFNSILKLLK 954
              A P+      +LL 
Sbjct: 726 YVFARPMPAAEFTELLA 742


>gi|319944921|ref|ZP_08019183.1| sensory box/GGDEF family protein [Lautropia mirabilis ATCC 51599]
 gi|319741491|gb|EFV93916.1| sensory box/GGDEF family protein [Lautropia mirabilis ATCC 51599]
          Length = 600

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 115/449 (25%), Positives = 219/449 (48%), Gaps = 41/449 (9%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
              QD LTG+ N   F+ RL ++L  +        T+M++D+D+++++ND LG A+GD  
Sbjct: 154 LLRQDLLTGLTNHTGFMRRLESVLRSTPRA----CTLMLLDLDRFRQLNDGLGHAIGDAF 209

Query: 592 LVSLTRRIGELLKFPD-------------ILARLSGNRFGIILISENNSLKIADFAIAMR 638
           L ++++R+ +L+                  LAR   +RF  +L       +       ++
Sbjct: 210 LKAVSQRLDDLVSRHTGPERRRRLRTTSPWLARTGADRFMALLPGRPGDPEHTACMDELQ 269

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           + + +P+++  +E+ ++AS+G A +       +++ ++AE AM  AK RGG+ +E F   
Sbjct: 270 RIMGLPLHIEGKELFISASVGMAVFPDHATDHTQLTRHAEQAMALAKRRGGHRIEYFDPT 329

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               R D + ++  L  A+ + EL L Y P I     +I G+EALI+W H + G I    
Sbjct: 330 QKQARLDALTLENHLRHAIRHQELRLFYQPKICSRTLQITGVEALIRWHHRELGLILPEH 389

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE   +I  I  + L    R   +W D+   PP+ + +N+++       L + ++ 
Sbjct: 390 FVPIAERSGLIADIGAWALNEACRQARAWLDEGL-PPLKMAVNVSAAQTQRGNLVDTVRQ 448

Query: 817 LISKTLYSPSRIKLSFSESVVMGNP--------ERSRLLLGRLRKIGISLTLDDFGTKCS 868
            +  +   P        E +++           +++R L+ +L+++G+ L+LDDFGT  S
Sbjct: 449 ALHDSGLPP--------EQLILELTETLLIESGDQARCLITQLKQLGLKLSLDDFGTGYS 500

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL  +PFD +K + S + G  ++    AI+ +I+ +A+ +    +A+ I    +   
Sbjct: 501 SLTYLHTLPFDEIKIDRSFIQGLPQQAVSRAIVNAILALAQGLRLEAVAEGIERPDEFAC 560

Query: 927 LTRM--GCDYIQDSHVASPLGFNSILKLL 953
           + +    C   Q +    PL    +   L
Sbjct: 561 IQQNLPDCTL-QGNLFCPPLSAADLRARL 588


>gi|120596868|ref|YP_961442.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
 gi|120556961|gb|ABM22888.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella sp. W3-18-1]
          Length = 816

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 126/600 (21%), Positives = 253/600 (42%), Gaps = 27/600 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ +     G   + +    +R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQSSLQEVHARLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   +    + W   +H  DR+     L  ++  +    +   R+R  D  + W++ 
Sbjct: 288 IGYAPDELECVFKTWESRLHPEDRETVLDCLQEYISGKSKEFESVHRLRHRDGHYIWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G  +R IGI  D++E +K+   I       ++ G   +P    F++RL+ 
Sbjct: 348 RGMLVDWDHLGRPMRMIGIHVDVSESEKNHAAIAELVEH-SVAGHRMLP--AVFMERLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L     +      +  I+++    +N +      + +   +  R+        I+  L 
Sbjct: 405 FLTQ-EDNSGHWGGLFFIEVESLGVMNSLTSHEA-ERLFTQIGARLSSYFTDNIIVGHLG 462

Query: 614 GNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
             RF ++    +   ++A       A  +R+ IA P +  +    + A++G       + 
Sbjct: 463 LGRFTLLAKELSIDAEVAARRTLALATELRQIIARPFHYRDHHFELNANVGIYLLDPVET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
                +++ AELA  HAK  G      +             ++ +L LA+E+ +L L++ 
Sbjct: 523 LEPLLVIRRAELAQKHAKLLGQCGCAFYHSELDVRQSRDELLQHELKLAIEHEKLSLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+ +   EI+  E L +W       +  SEF+ +AE   +I  ++L + +RI   +   
Sbjct: 583 PIVNVA-GEILSAEVLSRWYLANGDVVPPSEFIALAERCGLIAGLDLSVAKRICILLQQA 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            +Q    P  I INI++      +  E + ALI       +++ +  +ES ++       
Sbjct: 642 DEQGLSLP-RITINISALSFCQIDFIEHLIALIRTYSIRTNQLGIELNESALLLQDAFVN 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSI 902
             + +L +IG+ + LD+FG+  + LS L   P   VK + S +   T     + A+++S+
Sbjct: 701 ERITQLVEIGVPVILDNFGSGHAALSCLNQYPISEVKLDLSCVASITSTQIWQKALIQSV 760

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +P     +  ++AK I      +  T +GC   Q  + +  L F    +L      L+++
Sbjct: 761 LPF----DLCLVAKGIESAQQQQIFTALGCHAYQGYYYSRALNFADFKQLFHS-NSLLRS 815


>gi|294678041|ref|YP_003578656.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476861|gb|ADE86249.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 682

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 126/597 (21%), Positives = 232/597 (38%), Gaps = 21/597 (3%)

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV--LGSG 415
               L + ++   L      I  ++      H         G+ +    + LA     +G
Sbjct: 91  AAGGLRHCLLSAQLSSEAGRIGFVLFDAARAHQRDQDQARAGVLAQLRMRWLAQIERMAG 150

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
              +  D    R+  +  +  +LGL +       +    ++    R   R  L   V  +
Sbjct: 151 VGAFALDPETGRIEASDRVFEMLGLPATPGLTLEQLLARFVSDKARAAIRDDLAQLVRTQ 210

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
              L++E  +         + ++        G I R  G+ +DIT   +  + +   A  
Sbjct: 211 -APLEHEAVLSTPAGVLRRVQLQAEGEW-QGGRITRIAGVLHDITRMHEDQQRLWQAANI 268

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR+ F   +   L            ++++DID +  +ND+LG    D +L  +
Sbjct: 269 DELTGLANRRLFHRSVQGALA------GGAFALVLLDIDDFNAVNDLLGADAADALLRDV 322

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L+    + ARL G+ F ++L +          A A R ++A P ++      +T
Sbjct: 323 AVRLAGLVGPGGLAARLGGDEFALLLPAAEADAAAERLAQAARAALAQPFDVAATV--LT 380

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           A IG AS+ +    +  +L+ A  A+   K    G        +      R      +  
Sbjct: 381 ACIGMASYPADAADAEGLLRCARQALAEVKTVRPGSAAFLRGPLRDRVEARRSAIAFVQD 440

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A     +   Y P +RL    IVG EAL +    +        +    E++   + ++  
Sbjct: 441 AAREGRILAWYQPKVRLESRRIVGYEALARIRTREGAICGPEFWGAALEDVDCARLVDGT 500

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+ +  D+     +     + + +N +   L   +  E + ALI+    SP+ I+L   
Sbjct: 501 VLDAVLADLTQDAARL----MRVGVNFSEASLRGMDFAEQILALIAARGLSPALIELEVV 556

Query: 834 ESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           E+V++    E       RLR  G+ + LDDFGT  + LS+L  +P D +K + S + G  
Sbjct: 557 ETVLLGQRSELLAQGFTRLRAQGMRIALDDFGTGFASLSHLRDLPIDRIKLDKSFVLGLA 616

Query: 893 EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +      ILR+I+ +A  +    +A+ +  E     L  +GC   Q         F 
Sbjct: 617 DDHRNAPILRAILDLAAVLGLETVAEGVETEKAAVYLRGLGCLEGQGFRFGPARPFA 673


>gi|300790087|ref|YP_003770378.1| signal transduction protein [Amycolatopsis mediterranei U32]
 gi|299799601|gb|ADJ49976.1| signal transduction protein [Amycolatopsis mediterranei U32]
          Length = 724

 Score =  356 bits (914), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 110/571 (19%), Positives = 220/571 (38%), Gaps = 10/571 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +  + A       +     R    V  S   +    +    V     +A +LG   
Sbjct: 155 EIMHLSLLKAVRDAQWNLKQSEARFEEVVTSSASGIAVVALDGRIVRANAALAEMLGHPV 214

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           G + G +      +H    +  R  + + +   + R++   R+   D     + +    +
Sbjct: 215 GELAGSVLY--DVVHPESVEVLRDAMMALLDGGKERIRQSERLLRRDGDVVRISLTASLL 272

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++      ++ +  D TE       +   A  D LTG+PNRQ F   L T L  +  D 
Sbjct: 273 RDAEDRPSHFVVVIEDGTELMLLQGELSRQALHDVLTGLPNRQYFGTHLETALRRA--DP 330

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIIL 621
               T+  +D+D +  + + LG  VG+ +LV   +R+  ++ +   ++AR   + FGI++
Sbjct: 331 AYGVTLFHVDLDAFGMVCNSLGRRVGEQLLVHFAQRLRAVMAREKAMIARFHSDEFGILV 390

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +  ++  I     A+   +A P  +    + ++AS G     +  I   E+L+ A+  +
Sbjct: 391 ENTESTPDIDAIVRAINDELAEPFFVDGHGLALSASAGVVHRPAKGIDPVELLRQADQTL 450

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           + AK R       F   +   DR        +  A E+ E+ + Y P+ RL D E  G+E
Sbjct: 451 WRAKDRRRGQWRMFDREADAHDRRTQARAVGMAGAWEHGEIGVRYRPMARLADGEAAGVE 510

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           A + W+ P    +S    + +AE   ++  +  ++L    R    WR +A      +   
Sbjct: 511 ARLHWNRPDDTALSHECCVELAESTGLVLPLGDWVLRAAGRQGEWWRQRAGFGLPMVAA- 569

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +    + D+ L   +  L+  T   P ++ L      +          +  L  +G+ + 
Sbjct: 570 LTGHQVSDDALGTRVTRLLRDTGLPPGQLMLGVPAGAL--PVSGVIENVTALADLGVHVM 627

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           LDDFG     L  +  +P D V+ +  L+          L +++P+ + +  T++   I+
Sbjct: 628 LDDFGLGPDDLRAIEDLPVDIVRVDRRLVEWQAWSDSTFLGALVPLVRQVGATLVVDGIH 687

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            E         G +     +         + 
Sbjct: 688 TEDQANWWRTAGAELATGDYFGVARPPAELA 718


>gi|121728797|ref|ZP_01681810.1| signal protein domain/GGDEF domain protein [Vibrio cholerae V52]
 gi|121628930|gb|EAX61384.1| signal protein domain/GGDEF domain protein [Vibrio cholerae V52]
          Length = 791

 Score =  356 bits (914), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 118/445 (26%), Positives = 203/445 (45%), Gaps = 16/445 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E   + +     A  D+LT + N   F  ++   L LS   D     VM ID+D +K +
Sbjct: 326 SELHSTYQRTKALAENDHLTKLANLYQF--QVQADLLLSRCYDTQHIWVMYIDLDNFKYV 383

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-------PDILARLSGNRFGIILISENN-SLKIA 631
           ND  G  +GD +LVS    + +L K          I ARLSG+ F I+L+S    +    
Sbjct: 384 NDKYGHQIGDSLLVSFATHVRQLCKNFEASHNTYSIAARLSGDEFAILLVSPKRFNDCAK 443

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            FA  +   I    N       +TASIG A++        ++L NA+ AMY AK+ G N 
Sbjct: 444 IFAQRLLAPIQNKDNSPLSHFPITASIGIATFPKDGEHIEKLLLNADTAMYQAKNAGKNQ 503

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  +  +  +  +    I+  L L + + E  L Y P      + +VG E L++W     
Sbjct: 504 VAYYSQALDQIVQRRNNIERALRLGLFDQEFNLAYQPYFTCSGKRLVGFEVLLRWQSELL 563

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +S  EF+ IAE+  +   I+ +++ +  ++I + +      PI + IN++S +L   +
Sbjct: 564 GEVSPEEFIPIAEQTGLFGTIDRWVISKAFQEISTLQAIV-KEPIQVSINLSSAELNSLK 622

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +     +   SP+ I    +E+       +S  LL  L ++G  LT+DDFG+  + 
Sbjct: 623 LAQFIHRQAEQFGVSPAWIDFEITETFAAD--SQSFPLLHELSRLGYGLTIDDFGSGYTS 680

Query: 870 LSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           ++ L   P   +KF+   +       +  ++R +I +  +    + A+ I  E   + L 
Sbjct: 681 ITQLVQYPVQKIKFDRHFLDTLIATNKQNVIRPLIDLCHSQSMKVTAEGIESETMHQWLA 740

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              CDY+Q  +   P+  + I   L
Sbjct: 741 DYECDYMQGFYFGYPMSLSEISPWL 765


>gi|225387683|ref|ZP_03757447.1| hypothetical protein CLOSTASPAR_01453 [Clostridium asparagiforme
           DSM 15981]
 gi|225046233|gb|EEG56479.1| hypothetical protein CLOSTASPAR_01453 [Clostridium asparagiforme
           DSM 15981]
          Length = 615

 Score =  356 bits (914), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 175/436 (40%), Gaps = 10/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +     +D LTG+     F +    +L+        +  ++  D   +K +ND+ G 
Sbjct: 184 NEKLSDLTRRDTLTGVYRIDYFKEEAQRLLNTVPE----KFAIVYTDFSDFKYVNDIFGY 239

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD++L    + I   L+  +I  R+S + F ++L  E+          A R+ +    
Sbjct: 240 HYGDELLSRYGQIILSGLREHEICGRISADNFVLLLRYEDRKEIADRQLAADREVLTFMN 299

Query: 646 N-LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           +    + +     I         +     L  A  A    K     +   +  S  R   
Sbjct: 300 SAHHGQLLPTCCGICCVEDVIEPLNIDGFLDRANFARKTVKTGENTNYTYYDESIRRHLW 359

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I+  +  A+EN E  + Y P + L    I   EAL++W       I    F+ + E
Sbjct: 360 AEKDIESRMSAALENREFTVYYQPKVDLRTGRIGCAEALVRWRSQGGTIIPPDRFIPVFE 419

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              MI  ++ ++ E + R + S  D      + + +N++     D    E   A+ ++  
Sbjct: 420 RKFMIDRLDQYVFEDVCRWLKSRLDAGKQV-LPVSVNVSRLQFNDLNFVENYVAIRNRYD 478

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                I++ F+ES+   N       + +L+  G + ++DDFG   S LS L  +P D +K
Sbjct: 479 IPAELIEVEFTESIAFDNSSLLLRTVNQLKAAGFTCSIDDFGKGYSSLSLLKELPVDVLK 538

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +       T++    A++ SI+ + K  +   +A+ I     ++ L ++GCDY+Q    
Sbjct: 539 IDSFFFADGTDRNRDMALVESIVELVKKFDMRTVAEGIESMEQVEYLKKIGCDYVQGYVF 598

Query: 941 ASPLGFNSILKLLKER 956
             P+  +    LL E 
Sbjct: 599 YRPMPEDEYGGLLDEE 614


>gi|289678182|ref|ZP_06499072.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 328

 Score =  356 bits (914), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 162/323 (50%), Gaps = 5/323 (1%)

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +R ++ +P ++  + + +TASIG A +      S E++++A  AM  A+  G ++   + 
Sbjct: 1   IRNALRVPFHIEGQSLVMTASIGIALYPEDGEDSRELIRHAYTAMNSARKIGPDNYRFYT 60

Query: 697 VSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    R+ ++  L  AV N    +VY P + L ++ I GLEAL++W  P    +S 
Sbjct: 61  PQMNADVSARLDLEAALREAVRNQAFEIVYQPKLDLNNDRICGLEALLRWPRPGHPGVSP 120

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ + E L +I  +  ++++ +   I  W+         + +NI+ + + ++ L   +
Sbjct: 121 AVFVPVLESLGLIGEVGNWVVDSVCAQIARWQRSGLG-SFQVAVNISGQQISNSSLVADI 179

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +  + K   +P  +++  +ES +M N   +   LG LR   +S+++DDFGT  S L+YL 
Sbjct: 180 RQALEKHNVAPHWLEVELTESSLMENTAHTIATLGALRASRVSISIDDFGTGYSSLAYLR 239

Query: 875 YIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K + + +    S  +  AI R+II +A +++  +IA+ +     +  L    C
Sbjct: 240 RFPIDKLKIDIAFIREVTSNPQDAAIARAIIELAHSLDLLVIAEGVETPEQLAFLRENHC 299

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D IQ   ++ PL  + +   L+ 
Sbjct: 300 DQIQGYLISKPLPLDELETFLRS 322


>gi|317486955|ref|ZP_07945765.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316921830|gb|EFV43106.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 959

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 184/436 (42%), Gaps = 9/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S   I    ++D LT + N   F      +L  +    +    ++  DI+++K IND L
Sbjct: 510 RSNHRIQALLYRDGLTNLDNMNKFYVECGKLLRKA---PSGSYALLYGDINQFKTINDNL 566

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD +L +    +   +K  +  AR S + F I+L+   +   +      +   +  
Sbjct: 567 GFAVGDQILRAFGAILQRNVKDGECCARASADHF-ILLVRYADWESLLVRIEEIGMELDE 625

Query: 644 PINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFR 701
              + +    +    G              ML  A  A  +AK    N V    ++    
Sbjct: 626 WRRMQDMAYRIVTVFGVYLVNETEGFDLHRMLDFANYARRNAKQTMKNIVLYDEKMRQEA 685

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             +  ++  L +A+   E    + P + + D  ++G EAL++W++P  G +    F+   
Sbjct: 686 LLQRELEGRLEIALSQGEFDAYFQPKVDMRDGALIGSEALVRWNYPTRGLLMPGSFIPFF 745

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    +  ++L++ E + R +  W ++       +  N +S      E  E + A+  + 
Sbjct: 746 ERNGSVVEVDLYIYELVCRTVREWLERGMTVN-PVSCNFSSLHFDSPEFPELVAAIADRH 804

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + ++L  +ES +M NP+     + RL++ G  + +DDFG+  S L  L  +  D +
Sbjct: 805 NVPHALLELEITESAIMRNPQIVCAQVLRLKERGFMIAIDDFGSGYSSLGQLQQLMADVL 864

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +   ++ ++I MA  +   +I + +      + L  +GC Y Q  +
Sbjct: 865 KLDRSFVRRGMFGTRERIVIGNVIHMAGELGMQVICEGVENAKQAEMLIELGCYYAQGFY 924

Query: 940 VASPLGFNSILKLLKE 955
            A P+  +    LL++
Sbjct: 925 YAKPMPRDVFEGLLEK 940


>gi|187932389|ref|YP_001886422.1| MorA [Clostridium botulinum B str. Eklund 17B]
 gi|187720542|gb|ACD21763.1| MorA [Clostridium botulinum B str. Eklund 17B]
          Length = 1048

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 204/465 (43%), Gaps = 23/465 (4%)

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            W+ +    +     ++   +   +DIT     L+ I+     D LTG+     F      
Sbjct: 596  WISMTASKIKLPE-NVEANLMYFSDIT---NFLDRIISK---DALTGLMTLPKFEVMANE 648

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +L+ S+     +  ++  D DK+K IN+  G A+G+ VLV  +  +  LL   +++ R S
Sbjct: 649  LLNKSSN----KYALIYSDFDKFKYINETAGYAIGNKVLVKFSYLLSTLLDTDELVCRAS 704

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT---VTASIGFASWTSSKITS 670
             + F  ++        I      +       +   + E     ++   G    T+   + 
Sbjct: 705  ADNFLTLIKYT----DIETLKNRLINFNNEILKFQKEEFNHIKLSIISGIYLITNVNDSL 760

Query: 671  SEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              M+  A +A    K    +    +        ++   I+  +  A++N E  +   P I
Sbjct: 761  FSMIDKANVARKTIKGSHKSQFSFYDSKLHIKATEEKKIENRMIDALDNREFVIYLQPKI 820

Query: 729  RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +L  +++VG EAL++W  P        +F+ + E+   I  ++ ++ E + + + +W D 
Sbjct: 821  QLSTKKLVGAEALVRWITPDNVIFYPGKFIPLFEKNGFIVELDFYVYEEVFKVLRNWMDT 880

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                 + I +N++   + ++     +  LI +     S I+L  +E++ + N +     +
Sbjct: 881  KKKL-LPISMNVSRAHINNDTFISRLITLIKQYSIPISLIELELTENIFLDNIKEVLSKI 939

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMA 906
              L+ +G + ++DDFG+  S L+ L  +P D +K + S       + K   I+ +I+ MA
Sbjct: 940  IELKNLGFTFSMDDFGSGYSSLNLLKELPIDVLKLDKSFFPNNNVSSKEKIIVANIVKMA 999

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            K++  +++++ +  +  +  LT++GCD +Q    + P+  +   K
Sbjct: 1000 KDLNISVLSEGVETQNQVDFLTQIGCDMVQGYFFSKPIPVDEFEK 1044



 Score =  155 bits (392), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 16/299 (5%)

Query: 429 TTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
               +   ILGL     +   + + L  I+  D D F+ I           ++ EFR+  
Sbjct: 45  YANLEFFKILGLNKDIFNKDYKNDLLSIIYKEDIDLFKNIF-VTKHNVGDNIKIEFRINK 103

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-----DNLTGIP 542
            D  F W+++  R +SN N +  ++I I NDITE K + + +     +     D LT + 
Sbjct: 104 NDANFSWLLLMGRCISNKNCN-DQFICILNDITENKNTQQKLEIETLKLKLQLDPLTKLY 162

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           N+ +    +   L     + +    +M+IDID +K IND LG   GD++L+ ++  +   
Sbjct: 163 NKTASKVLIEDFL---KNNTSTSHALMIIDIDNFKSINDNLGHIFGDNILLKVSDTLKSC 219

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
               DI+ R+ G+ F +   +  N+  I+  A  +  SI       +++ +++ SIG + 
Sbjct: 220 FDKDDIVGRVGGDEFIVFFKNVTNTEMISTKAYKVCNSIKKIYI--DKKYSISCSIGISI 277

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
             +  +   ++ + ++ A+Y AK  G +  E +  +     +   + D+      + LY
Sbjct: 278 SPADGVAYYDLFEKSDHALYLAKRYGKDCFELYDKNKIDVFK---ESDIFNFHSKNNLY 333


>gi|255101013|ref|ZP_05329990.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255306867|ref|ZP_05351038.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 493

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 199/447 (44%), Gaps = 19/447 (4%)

Query: 512 YIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           ++GI   I   K + +      A+ D +TG  N + F   +T +L    T  N +  +++
Sbjct: 58  FLGIIIYILYSKANSQKTIEKVAYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVI 115

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            DIDK+K IND+ G   G+ +L  +   + EL    +  AR+S + F I+L        I
Sbjct: 116 FDIDKFKAINDIYGHKKGNLILKDIADTLNELTDINETFARVSADNFNILLTYNKKEDII 175

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + K I     L      V  S G        ++ S     A LA    K+    
Sbjct: 176 -----NIIKKIMANNEL------VNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDV 224

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           +   F             I++++  A+E+ +  +   P   +  ++  G EAL++W + +
Sbjct: 225 NFAFFNDKLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTE 284

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              I   +F+ I E+   I+ I++++LE+  ++I S  D+  + P+ I +N +  D    
Sbjct: 285 KEVIYPGDFIPIFEKNGFIRKIDMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFFKK 343

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E +  +  +     S I++  +ES + G+ +    +   L+ IG  + +DDFG+  S
Sbjct: 344 DFIENIVNICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYS 403

Query: 869 LLSYLGYIPFDTVKFNGS-LMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            ++ L  IP + +K +    +     +K   +++SI+ + K +   ++A+ I     I+ 
Sbjct: 404 SVNMLKNIPLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEM 463

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L +  CD +Q  + + PL      KL+
Sbjct: 464 LKKANCDIVQGYYFSKPLPIKEFEKLV 490


>gi|239833658|ref|ZP_04681986.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821721|gb|EEQ93290.1| diguanylate cyclase (GGDEF) domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 687

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 101/429 (23%), Positives = 195/429 (45%), Gaps = 14/429 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+  + +   + +D LTG+ NR+     L   + L    +     VM+ID+D +K +N
Sbjct: 247 EAKQLADEMALKSQEDPLTGLFNRRG----LENSIRLFPVAEG-PFIVMLIDLDGFKSVN 301

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGDD+LV++ +RI ++     +LAR+ G+ F ++    + +++    A  +  S
Sbjct: 302 DTYGHKVGDDLLVAIAQRIRQISPERSVLARIGGDEFVLVYPEPSATIEAGLVAARIIGS 361

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++         + + A +G        +   EML  A+ A+Y AK RG N    F     
Sbjct: 362 LSAHYE-GILSVEIGACVGICRLER--LDPVEMLLRADFALYAAKRRGRNEYYFFEKRLH 418

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I+ DL +A+E  ++   + P++ L    +VG EAL++WDHP+ G I+  E +
Sbjct: 419 HEWERKQSIERDLRIAIETGQIQTYFQPVVELSSGSMVGFEALLRWDHPQHGTIAPPEII 478

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A E+ +++ +   +       I    +      + + +N++ +++    +   + + +
Sbjct: 479 DVACEVGVVRQLTKNVFFNCCEMIDKLTES-GRCDLTVAMNLSPREMAGGRIPHEILSQM 537

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +     S +++  +E     +       L  L   G+S+ LDDFGT  +  + L     
Sbjct: 538 ERRDLPVSMLEIEITEEAPF-DQRGMNDSLDALSNAGVSIALDDFGTGFATFASLKKGLI 596

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   + G   +E    I+R+++ +A  +   + A+ I  E D   L  +GC   Q
Sbjct: 597 DKIKIDQVFVRGIAESEGDQHIVRAMVALADALGVKVTAEGIETEEDRDMLCALGCSSGQ 656

Query: 937 DSHVASPLG 945
               A  L 
Sbjct: 657 GFLFAPALP 665


>gi|225378670|ref|ZP_03755891.1| hypothetical protein ROSEINA2194_04339 [Roseburia inulinivorans DSM
           16841]
 gi|225209507|gb|EEG91861.1| hypothetical protein ROSEINA2194_04339 [Roseburia inulinivorans DSM
           16841]
          Length = 549

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 194/427 (45%), Gaps = 16/427 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+   Q F   +   L+    + + + T + +DI+++K IN+  G+  GD +LV 
Sbjct: 131 HDGLTGLYTIQKFSQCVKRNLEN---NQDTKFTFIRLDIERFKMINNFYGVEAGDRLLVY 187

Query: 595 LTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           ++  I    +     +  R+ G+ FGI      +  K+  F + +++ +       +   
Sbjct: 188 ISGLIETYWQDVENCVFGRIDGDVFGICFP--KDEKKLNGFILYIKRELKKY----KAAY 241

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +  ++G      + +    ++  A LA    K +   H   +             I  +
Sbjct: 242 YLETAMGIYDILDNNLDVRNIIARATLAAKQCKGQYMIHEARYTEELRAKIIREQNIINE 301

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E  E  + + P   L      G EAL++W       +S  +F+ + E    I  +
Sbjct: 302 MEHALETGEFVVYFQPKYELDHCRPSGAEALVRWKKADGTIVSPGDFIPVFESNGFIIRL 361

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++ +++ R I +         + I +N++  +L + +  E +  L+ K    P  + L
Sbjct: 362 DYYVWDQVCRFIKNNLAHRGDSEV-ISVNVSRVNLYNPDFLESLVNLVEKYKIPPKYLNL 420

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-T 889
             +ES    +    +  +  L K G ++ +DDFG+  S L+ L  I  D +K +   +  
Sbjct: 421 ELTESAFSDDARMIQNAVDYLHKAGFTILMDDFGSGYSSLNVLKDIDIDVLKIDMRFLSK 480

Query: 890 GSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           GS+E+R   IL ++I MAK+++  +IA+ +  E  +K L R+GCDYIQ  + A P+    
Sbjct: 481 GSSEERGEKILEAVIKMAKSLDMLVIAEGVEEEKQVKMLKRLGCDYIQGYYFAKPMSKKD 540

Query: 949 ILKLLKE 955
            +KLL++
Sbjct: 541 YVKLLQK 547


>gi|92116247|ref|YP_575976.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
 gi|91799141|gb|ABE61516.1| diguanylate cyclase/phosphodiesterase [Nitrobacter hamburgensis
           X14]
          Length = 592

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 118/564 (20%), Positives = 231/564 (40%), Gaps = 17/564 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q V A     Q       + S  +   G   + WDI  D +T T +  +I      ++  
Sbjct: 18  QAVNAPADRPQAPQVQAPQVSEILAALGRAAFVWDIASDAITWTDEARSIFQDIDPALLA 77

Query: 448 PIRNWLPYIHINDRDNFRTILD---SFVGYRRGRLQYEFRVRA-ADNQFHWMIIRIRPMS 503
               +   I  +       +L    +         + E+ VRA A     W+       +
Sbjct: 78  TGAGFASLIEPSGSIRADILLATPPARRHGEGVPYRIEYGVRASASAPMLWIEESGCWFA 137

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +++G  +R  GI     E++   E ++  +  D LTG  NR      L   ++ +A    
Sbjct: 138 DADGKAVRAEGIVRLENERRARDEQLIRLSRDDALTGELNRTHLTAALAEAIEEAARY-R 196

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                M++ ID   +IND  G  V D+V+  + RRI   L+  D+L R SGN+FG+IL +
Sbjct: 197 SSFAFMMVGIDHLARINDAFGFDVADEVIGDVARRIRARLRSGDVLGRFSGNKFGVILKN 256

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                        +       +      ++VTASIG          + E +  A+  +  
Sbjct: 257 CTVDDMSVAAERLLAGIRDEIVPTRSGPVSVTASIGAVLAPRYARNADEAINRAQEILEA 316

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           AK R       +R S  R  +  I     +++  A+    +   + P++     E    E
Sbjct: 317 AKSRRSGSFAVWRPSVERDAQRRINIRVTDEIVTALNERRIVTAFEPVVDARTREPAFYE 376

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++        + + + + +AE+L +I+ ++  +LE +  ++         P + + +N
Sbjct: 377 CLVRMHQQDGQVLLAPDVVPVAEKLGLIRLVDHRVLELVIAELAEA------PGVRLSLN 430

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           I+ +  +D +    +++L+        R+ +  +E+V + + +  R  + RL+  G  + 
Sbjct: 431 ISPETTMDADWWAAIESLMGAHPGVAERLIVEITETVAIQDIDDVREFVTRLKTFGSRIA 490

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG   +    L  +  D VK +G+ +     +    A ++++I +A+ ++   +A+ 
Sbjct: 491 IDDFGAGYTSFRNLRKLGVDIVKIDGAFVQNLARSSDDRAFVQTLIDLARRLDIRTVAEW 550

Query: 918 IYGEIDIKELTRMGCDYIQDSHVA 941
           +  E     L   GCDYIQ   + 
Sbjct: 551 VQDEQSAVMLRDWGCDYIQGRLIG 574


>gi|88798938|ref|ZP_01114520.1| sensory box/GGDEF domain/EAL domain protein [Reinekea sp. MED297]
 gi|88778418|gb|EAR09611.1| sensory box/GGDEF domain/EAL domain protein [Reinekea sp. MED297]
          Length = 497

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 95/422 (22%), Positives = 193/422 (45%), Gaps = 9/422 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +     F  RL ++L       +    V+  DID +  IN   G   GD VL + 
Sbjct: 77  DPLTHLLRHYLFKQRLDSLLQRPR--PDHHLMVIYTDIDAFGNINTQHGYENGDRVLSAT 134

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             ++        ++ R+  ++F +   +  +   I    + +R+++          + ++
Sbjct: 135 ADQLLSTYSSEVLIGRVGADQFALAFWTPKDPGNIDQQIVLLRQALQE--VETGLSVPLS 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCL 713
            + G A   +   T+  ++     A+  AK       E          + R  +  DL L
Sbjct: 193 HTFGVALAPADGNTAKRLMSACANALARAKQHYRGSTEFHHAELSLKETQRRNLLSDLRL 252

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   ++ +VY P   L D+++ G+EAL++W HP  G I   EF+ +AEE  +   I   
Sbjct: 253 ALTQQQMTVVYQPQFSLPDQQVTGVEALVRWQHPTKGAIPPDEFIPLAEEYGLSAEITEQ 312

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++R  +++       +  P  + INI++ +     L E +  +++++      +++  +
Sbjct: 313 VIQRCTQELAESGLLGHAIP-RVSINISAVEFNSPPLFERLTHMLNQSPRLSPYLQIEIT 371

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+  + N + S   + RL + GI  ++DDFGT  + L+ L  +P + +K + S       
Sbjct: 372 ETATLANLQHSADAINRLHRSGIQFSIDDFGTGYTSLTMLKDLPVNEIKIDRSFTRDMMN 431

Query: 894 KRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +    AI+ +II MA+  + T++A+ I  +  +  LT M CD +Q   +A+P+    +++
Sbjct: 432 QSQVAAIVTAIISMARAFDLTVVAEGIEQQDQLTLLTDMHCDEVQGYFMATPMPITELIE 491

Query: 952 LL 953
            +
Sbjct: 492 FI 493


>gi|126699449|ref|YP_001088346.1| putative signaling protein [Clostridium difficile 630]
 gi|115250886|emb|CAJ68711.1| Two-component response regulator [Clostridium difficile]
          Length = 502

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 199/447 (44%), Gaps = 19/447 (4%)

Query: 512 YIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           ++GI   I   K + +      A+ D +TG  N + F   +T +L    T  N +  +++
Sbjct: 67  FLGIIIYILYSKANSQKTIEKVAYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVI 124

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            DIDK+K IND+ G   G+ +L  +   + EL    +  AR+S + F I+L        I
Sbjct: 125 FDIDKFKAINDIYGHKKGNLILKDIADTLNELTDINETFARVSADNFNILLTYNKKEDII 184

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + K I     L      V  S G        ++ S     A LA    K+    
Sbjct: 185 -----NIIKKIMANNEL------VNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDV 233

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           +   F             I++++  A+E+ +  +   P   +  ++  G EAL++W + +
Sbjct: 234 NFAFFNDKLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTE 293

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              I   +F+ I E+   I+ I++++LE+  ++I S  D+  + P+ I +N +  D    
Sbjct: 294 KEVIYPGDFIPIFEKNGFIRKIDMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFFKK 352

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +  E +  +  +     S I++  +ES + G+ +    +   L+ IG  + +DDFG+  S
Sbjct: 353 DFIENIVNICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYS 412

Query: 869 LLSYLGYIPFDTVKFNGS-LMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            ++ L  IP + +K +    +     +K   +++SI+ + K +   ++A+ I     I+ 
Sbjct: 413 SVNMLKNIPLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEM 472

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L +  CD +Q  + + PL      KL+
Sbjct: 473 LKKANCDIVQGYYFSKPLPIKEFEKLV 499


>gi|313899235|ref|ZP_07832751.1| conserved hypothetical protein TIGR03982 [Clostridium sp. HGF2]
 gi|312955915|gb|EFR37567.1| conserved hypothetical protein TIGR03982 [Clostridium sp. HGF2]
          Length = 740

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 11/432 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +KK  + I   AF DNLTG+   + FL  L   L L   +      V+ +DI  +K +ND
Sbjct: 309 RKKHQKEIEKLAFYDNLTGLYRYEKFL--LDGQLILEKKEQ--PVAVLYLDIMGFKLLND 364

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD VL+ +   +  + K  DI  R+SG+ F I+L       +I +    +    
Sbjct: 365 MEGYGYGDRVLLFVADILRSVAKQQDICCRISGDDF-ILLTPYAKKEEITETCRQILTLS 423

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A  ++    +I +   I          T S ++  A +A            + +      
Sbjct: 424 ATGVD-NRHDIPIRIGICLQEDADIDSTISTLVDRARMAQTGIHDDSTAAWQFYNEEMRE 482

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +++ +  A+ + E   V  P   L   +I+G EAL++W     G  S  EF+ 
Sbjct: 483 ILLRDAEMEQHMEQALRDGEFLHVIQPKYALDGSQILGGEALLRWQRKGHGFTSPGEFIP 542

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E    I+ ++ ++   + + I     Q     + I +N++   L   +  +   A+ +
Sbjct: 543 LFERNGFIRKLDTYVFISVCQTIQKRLAQGKAV-VPISVNVSRIHLYQEDFADSYIAIKN 601

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +       I+L  +E++++ N      +L +LR  G   ++DDFG+  S L+ L  +P D
Sbjct: 602 QYHIPDGIIELELTENILLKNTREIFTILEKLRSHGFCCSIDDFGSGYSSLNALKDLPVD 661

Query: 880 TVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +      S+  E+   IL+S+I MAK ++  ++A+ I     +  L   GCD +Q 
Sbjct: 662 VVKLDRVFFDQSSHVERNKTILKSMISMAKELDMKVVAEGIECTQQLDMLQDTGCDMVQG 721

Query: 938 SHVASPLGFNSI 949
              A P      
Sbjct: 722 FIYAKPCSEEDF 733


>gi|297537849|ref|YP_003673618.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297257196|gb|ADI29041.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 571

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 104/462 (22%), Positives = 193/462 (41%), Gaps = 7/462 (1%)

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +     P+ +S G  +  + + ND+  Q++  E +      D LTG+ NR  F  RL   
Sbjct: 95  LDDSASPIFDSEGKAIGTVLVFNDMAMQRQMAEELSYRTTHDTLTGLVNRDEFEHRLQKF 154

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           ++      +L+  +M ID+D+ K +N   G + GD +L  +   +   ++  D LAR+  
Sbjct: 155 INE-NRGLDLQNALMYIDLDQLKAVNISCGHSAGDALLKEVGGIMQSCIRNTDTLARIGD 213

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           N+F +IL   + +  IA      R   A      E+   + AS+G      +  + + ++
Sbjct: 214 NKFAVILYQCDTAKAIAIAKKICRSIEAFRFMSNEQSFCIDASLGLVMIDKNWTSDTSLM 273

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLM 731
           + A+ A   AK  G N +  +                  +  A+E     L    I+ L 
Sbjct: 274 RAADSACSEAKLAGRNRLHLYYDDHLTETHRSDVRWVSRIEQALEYDGFVLFCQRIMPLK 333

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            + +   E LI+      G I    F+  AE   ++  I+ +++ ++   +    D  + 
Sbjct: 334 HQGLEHAEILIRMKDKSGGFIQPDAFLPAAERFNLVSRIDRWVIAQMFEWMKVNVDSLSH 393

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               I +N++ + L D      +  LI  T    S++    +E+  + N   ++  +  +
Sbjct: 394 IE-TISVNLSGQSLGDVAFHSYVLNLIETTAIDCSKLCFEVTETAAITNIAAAQNFIQAM 452

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNI 909
            + G+  +LDDFG+  S   YL  +  D +K +G  +T   E +   A +R I  +AK  
Sbjct: 453 NQHGVKFSLDDFGSGVSSFGYLNNLAVDYLKIDGQFITDLLENKIGQATVRCIAEVAKVT 512

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               IA+ +  +     L  MG D+ Q      P   NS+L 
Sbjct: 513 GKRTIAEWVESQAVENMLKEMGVDFTQGYLKHKPSALNSLLD 554


>gi|293610320|ref|ZP_06692621.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827552|gb|EFF85916.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 627

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 7/380 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K+ + +   + QDNLT +PNR   +D    +L       + +   + ID+D++K +N
Sbjct: 246 ELRKANKELANLSIQDNLTKLPNRLYLVDYAEVLLSD-HRYKDQKIAFLYIDLDRFKSVN 304

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGD +L+ +  R+   L     L R+ G+ F +++    N+ +    A  + + 
Sbjct: 305 DAFGHHVGDQLLIQMANRLHWQLNEKCKLLRIGGDEF-LLIAENTNADEAVILAEKVLQL 363

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I     +  +EI ++AS+G A +        ++L NA+ AM  +K +G N    F  S+ 
Sbjct: 364 IQESYQISGKEINISASLGVALFPEHGQNVQDLLMNADAAMLMSKEQGRNTYTIFSYSTH 423

Query: 701 RSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + +      +  DL  AVE  +  L Y P     + E+ G+EALI+W+HP  G ++   F
Sbjct: 424 QQETRSQSKLINDLYKAVEEKQFILYYQPKFN-TNLEVCGVEALIRWNHPALGILTPHMF 482

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE+  +I  +  + LE+    I  W      P   + +N+++    + +L   ++AL
Sbjct: 483 IEGAEKTGLIIPMGYWALEQACLQIQEWERSN-TPFYPVAVNLSALQFENKKLFSTLEAL 541

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES  M + + S     RLR +GI + +DDFGT  S   YL  +P
Sbjct: 542 LKKYQIQPHHLIVEITESTAMRHIDLSIRACERLRDMGIRVAIDDFGTGHSSFLYLKDLP 601

Query: 878 FDTVKFNGSLMTGSTEKRIA 897
            D +K +   +         
Sbjct: 602 VDELKIDRGFIVDLKPGSKE 621


>gi|294678061|ref|YP_003578676.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476881|gb|ADE86269.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 641

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 113/445 (25%), Positives = 196/445 (44%), Gaps = 7/445 (1%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            ++  +   +++ +     A  D+ TG+ NR++F  RL   +            ++++D+
Sbjct: 191 ALSRAVDSLRQARDENYLLANIDDTTGLLNRKAFNARLAEAVAR-QRGCGHGFALLLMDL 249

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND+ G   GD++L  + RR+   L   D++ARL G+ F +IL     + +I   
Sbjct: 250 DRFKNVNDLFGHGFGDELLTEIARRLRANLPEGDVIARLGGDEFAVILAEVGAAAQIRPI 309

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +  +   P +L  R +   ASIG            E+L  A+LA+  AK  G     
Sbjct: 310 ADRLLAAFEPPAHLAGRRVHPGASIGAVICPEDGADPVELLLKADLALNRAKESGRGQCL 369

Query: 694 SFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F     +       I+  L  A+E  +LY+ Y P I L D  ++G EAL++W       
Sbjct: 370 LFNEQLRKRVIESDRIEAGLREALEGEQLYVQYQPKIALGDGRLLGAEALVRWRRADGEE 429

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I+   F+ IA E  ++  ++  + E +A D++ WR     P   I +NI   D+   EL 
Sbjct: 430 IAPDSFLTIAAERGLLPNLSRRIAETVAADLLGWRGAGLAPG-KIALNIHPDDIKSPELL 488

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               A+          + L  +E   +G   + +  LL  L   G  L+LDDFGT  + L
Sbjct: 489 LDTIAMFEAAGIDGRDLLLEITEGCFVGRGTDMTISLLDSLADRGYELSLDDFGTGHASL 548

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P   +K + S + G        AI+ +I  +A+ +    +A+ +        L 
Sbjct: 549 GDLKKVPVAELKIDRSFIAGLCFRRADRAIVAAIAEIARGMGIRSVAEGVEDADQRAMLV 608

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
            +G D  Q    +SP+      + L
Sbjct: 609 DLGVDVGQGYLWSSPMDAADFARFL 633


>gi|217329183|ref|ZP_03445263.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           O157:H7 str. TW14588]
 gi|217317622|gb|EEC26050.1| heme-regulated cyclic AMP phosphodiesterase [Escherichia coli
           O157:H7 str. TW14588]
          Length = 383

 Score =  356 bits (913), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 178/383 (46%), Gaps = 8/383 (2%)

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A  D  L+ +  R  E LK    L R+ G +F  ++  EN+   I   A  +R  
Sbjct: 3   DSLGYAWADQALLEVVNRFREKLKPDQYLCRIEGTQFV-LVSLENDVSNITQIADELRNV 61

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ PI + +    +T SIG +           +L  A  AM + +  GGN  + F  +  
Sbjct: 62  VSKPIMIDDNPFPLTLSIGISY--DVGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMN 119

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              +  +     L  A+ N++L LVY P I     E+ G+EAL +W  P+ G++  S F+
Sbjct: 120 EMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSRFI 179

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE+  I+ I  +++    R +  WR Q    P  + +N+++     N+L   +   +
Sbjct: 180 PLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA-LSVNLSALHFRSNQLPNQVSDAM 238

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                   ++ +  +ES++M +       +  LR +G+ L++DDFGT  S LS L  +P 
Sbjct: 239 QAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPV 298

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +     ++   A+L +I  + +++  T++A+ +  +   + L ++ C  IQ
Sbjct: 299 TEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQ 358

Query: 937 DSHVASPLGFNSILKLLKERFPL 959
               + PL    I   +    PL
Sbjct: 359 GYFFSRPLPAEEIPGWMSSVLPL 381


>gi|152998057|ref|YP_001342892.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150838981|gb|ABR72957.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 768

 Score =  356 bits (913), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 195/455 (42%), Gaps = 18/455 (3%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +    G +   +    D        E +   A  D LTG+ N+ +    L+  L      
Sbjct: 321 IDGEFGVLSHTMKTMQD--SIINREEEMKFRASHDQLTGLFNQSAVEQYLSDEL------ 372

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              +  +++++I  +K IN++LG  VG  +L  +  R+       ++LARLSG++F +I 
Sbjct: 373 PKEQGGLVLVNIRHFKDINNMLGFDVGSSLLSKVAERLQRWGHDANMLARLSGDKFLLIF 432

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELA 680
                          ++   +    +     I +  SI    +  +  + +  ++  ++ 
Sbjct: 433 SRPITQQD----CGNLKCLFSKEFEVEAGSGIRLDISIAVLPFEHATASVNSAMRRLDIV 488

Query: 681 MYHAKHRGGNHVESFRVSSFRSD-RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
              A+      V            ++ I  DL  A+++ +L++VY P + L+ ++    E
Sbjct: 489 ADEARESSELCVFYEVGQDENHRRQLTIIRDLPTALDSGQLFVVYQPKVGLVGDDCHEAE 548

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           ALI+W HP+ G +   EF+ + E    I+ +  ++L  +   +  W  Q +   I I +N
Sbjct: 549 ALIRWIHPELGFLPPDEFISLLEHAGSIQQLTKWVLNTVLSQLSKWWAQGHE--IRIAVN 606

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++ DLLD +L   +   +         + L  +ES VM +  +   +L  L ++GI L 
Sbjct: 607 LSAHDLLDEQLPFIVSEALQANRLPTRALALEVTESAVMKDRVKVINVLKALHEMGIHLA 666

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL  +P + VK + + +    + +    I ++ I ++ ++   + A+ 
Sbjct: 667 IDDFGTGQSSLAYLRELPVNEVKIDRAFIQFIDTNKGDEFITKATIELSHSLGFQVTAEG 726

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                    L +  CD IQ    + PL      K 
Sbjct: 727 AENAEGTALLRQYHCDKIQGYFFSKPLVAEEFFKW 761


>gi|251773040|gb|EES53596.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 702

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 190/447 (42%), Gaps = 18/447 (4%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            IL  +G    I    +  + +   A +D LTG+ N++ F + L   +  S    N   +
Sbjct: 261 SILNVVGSVKAI---YRYTKDLEYYAVRDPLTGLFNQRVFWELLAYEIGRSQRHGNQPFS 317

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           VM+ID+D +KKIND  G   GD+ L  +   I    +  DI+AR  G+ F +IL    + 
Sbjct: 318 VMIIDVDDFKKINDTFGHTFGDEFLQKIAGVIQATARKEDIVARYGGDEFAVILPEAASE 377

Query: 628 LKIADFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
             +A  A  +R         +        + SIG ASW    +   ++   A+  MY AK
Sbjct: 378 HAVA-MAKRIRAGFQRFSLESPEGVRAKSSVSIGIASWPEHALEPKDLFLVADNMMYRAK 436

Query: 686 HRGGNHVESFRVSSFRSDRVMIKED---LCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
             G N       +        + E    L  A+E+  +   + PI+   +  +   E L+
Sbjct: 437 AHGKNGHCLPTDADVVEVLRSVSEKYLILQQAIEDRSILPYFQPIVSAAEGTVEAYEVLM 496

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           + ++ +   + + EF+ IAEE  +I +++  ++E+  R  +    +       + IN++ 
Sbjct: 497 RVEY-RGKILPAGEFIEIAEESGLISSLDFIVMEKAFRHAVEQNFEGL-----LFINLSP 550

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K ++  E    ++ +I +T     +I    +E   + N     + +  L+  G    +DD
Sbjct: 551 KAIVTAEFIPTIRRIIRETGIRSRQIVFEITERETVRNASLLEVFISELKSDGSRFAIDD 610

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKDIY 919
           FG+  S ++YL     D +K  G  +    +      AI+ SI  + + I    +A+ + 
Sbjct: 611 FGSGFSSMTYLKRFSVDFLKVEGDFIRNLPQTGSIDRAIVASIATLTREIGIQTVAESVE 670

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGF 946
               ++E+ R G    Q   +  PL  
Sbjct: 671 SPEILEEVRRHGLTLAQGFGIGRPLPE 697


>gi|237748679|ref|ZP_04579159.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380041|gb|EEO30132.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 759

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 194/462 (41%), Gaps = 18/462 (3%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G ++ +I +     +  K+   +   A+ D++TG  N   F      ++     +     
Sbjct: 297 GALIFFIVV-----QNYKNRRKLEQLAYVDSITGGNNFNKFKLLAAEMIA---RNKGKNL 348

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ IDID +K +ND+ G   GD++LV + + +  +    D+ ARLS + F  ++     
Sbjct: 349 YMIRIDIDNFKLLNDMYGFREGDEILVGINQLLSRMDSGRDLHARLSDDNFIWLVNCLTE 408

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              ++        +    ++  ++   +  + G        +   +++  A +A   AK 
Sbjct: 409 EEAVSKI-RQFNDAFQGTMSQDQKGYKLGFTFGAYKIHPKNMDVDKIIDRAAMAHQSAKL 467

Query: 687 RGGNHVESFRVSSFRSDRVMI---KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
              +    F     R+D + I   +  +  A+ N E  +   P   +    I G EAL++
Sbjct: 468 LHADPKVVFYDEKIRNDAIRIKTIENMMYDALANREFVVYLQPKYNVSTSTIEGAEALVR 527

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W       I  SEF+ I E    I  +++++LE + R    W D     P+ I IN +  
Sbjct: 528 WVR-DGKVIPPSEFISIFERNGFIVNMDMYVLEEVCRLQRKWLDMGLN-PVPISINQSKS 585

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            +   +  + +  +I++       I++   E+++  N      ++ +LR+IG+ + +DDF
Sbjct: 586 LVYSKDYVDKLYGVITRYDLPARLIEVELLETIIHDNVTELISIIRQLRRIGLLICIDDF 645

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S L+ L     D +K +   +     +E+   +L  II +AK ++  ++ + +  E
Sbjct: 646 GSGYSSLNMLKDFDVDVLKIDREFLNNAEISERAKYVLAQIITLAKGLKMIVVTEGVETE 705

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
                L  + CD  Q    A P+      KLL    P    T
Sbjct: 706 KQAGLLKELECDTAQGFFYARPMPCEQFEKLLS--VPGGTRT 745


>gi|326796989|ref|YP_004314809.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547753|gb|ADZ92973.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 644

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 203/432 (46%), Gaps = 11/432 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I   + +D LTG+ NR +F++    I   +        +++ ID+D YK +ND +
Sbjct: 217 QRSRQIYELSHKDPLTGLLNRAAFIETFKDINSPANQHS----SLLFIDLDGYKLVNDGM 272

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD ++ S+  RI E      ++ R  G+ F +    E+ +  +  FA  + + +++
Sbjct: 273 GHAAGDQIMKSVAERILEYCVDSTLICRWGGDEFLVYSPYESKAKTLE-FANGLIERLSL 331

Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           P  +  +    + A+IG A +    +  S +++ A++AMYH K+    +   F  +    
Sbjct: 332 PYPVTAQSSANIGATIGIAIYPEHGLEQSMLIQRADMAMYHQKNIEKGYARFFDDNLQSK 391

Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + ++  +  A+ N + Y+++ PII     EI  +EAL +W+      IS +EF+ I
Sbjct: 392 LLRELHLRNCMLNAINNKDFYVLFQPIIDTTHNEIAFIEALARWNL-DGEQISPAEFIPI 450

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +IK++   +  R      ++  + +     +  N++   L D    + +   +  
Sbjct: 451 AEQHGLIKSLGEQLFIRALEKAKTYVMERHST--KLCFNVSINQLHDIHFSKVVIKALKD 508

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T +   ++ L  +E+ +  +       L +LR +GI + +DDFGT  S L+Y+     D 
Sbjct: 509 TQFPADKLVLEMTETAMAQDKSTIMTQLRKLRSLGIQVAIDDFGTGYSSLAYMQNFDIDL 568

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           VK + S +T    ++ ++++++  ++K     IIA+ I  +   ++L  +     Q    
Sbjct: 569 VKLDRSFITQIDSEQTSVIKAVTELSKAFHFNIIAEGIEYKNQAEKLQSLDISVHQGFLY 628

Query: 941 ASPLGFNSILKL 952
             P+  N I  L
Sbjct: 629 YRPMTMNQISDL 640


>gi|13472300|ref|NP_103867.1| hypothetical protein mlr2546 [Mesorhizobium loti MAFF303099]
 gi|14023045|dbj|BAB49653.1| mlr2546 [Mesorhizobium loti MAFF303099]
          Length = 518

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 203/449 (45%), Gaps = 17/449 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + +    E       +D +TG   R+ FL+ L   L      D    T+++ID+D +K++
Sbjct: 82  SAEAAEAEKHHFL-TRDAMTGAMTRRYFLEALRDSLGTMR--DRREATLLLIDVDHFKQL 138

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD  LV L +   E +    ++ RL G+ FG+I+    +   I      +  
Sbjct: 139 NDTFGHQFGDLALVHLVKT-SERVFADGMVGRLGGDEFGVIIPH-GDLAAINKDIRQLLD 196

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++    +   + I ++ S+G A   +    ++E++  A+LA+Y +K  G   V  F    
Sbjct: 197 TMRAGKSHEGKTIPLSISVGVALAPAHASNTAELMLVADLALYESKAAGRGRVTVFDEEM 256

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              +  R +++ +L  AV   EL L Y PI+   D     LE LI+W HP  G IS +EF
Sbjct: 257 LSDKRYRRLVERELRAAVYLGELELHYQPIVNP-DGSAYALEGLIRWRHPVRGLISPAEF 315

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE   +I  +  ++ +R   D+       + P   I IN++ + L  +E+      +
Sbjct: 316 IPIAERSTLIDMLGEWVFKRACADV------GHFPGRRISINVSGEQLKRDEIVTMCDRV 369

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T  S ++  +  +E+V       +   L  LR +G  + LDDFGT     +YL  +P
Sbjct: 370 LRETGRSATQFIIEITETVATAATPETLRRLEALRGLGFHIALDDFGTGHCGFNYLKTLP 429

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D++K + S +      +     + ++  +A+  + TI+A+ +  + +       GC+  
Sbjct: 430 IDSIKIDRSYIRSLAHDQVAQIFVSALAQIARIQDVTIVAEGVETQEEFALARAAGCNRF 489

Query: 936 QDSHVASPLGFNSILKLLK-ERFPLVKNT 963
           Q      P   + +  L   +  PL ++ 
Sbjct: 490 QGYFFGRPAPRDKVAPLRSIDAEPLAQSA 518


>gi|117922551|ref|YP_871743.1| diguanylate phosphodiesterase [Shewanella sp. ANA-3]
 gi|117614883|gb|ABK50337.1| diguanylate phosphodiesterase [Shewanella sp. ANA-3]
          Length = 816

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 128/652 (19%), Positives = 270/652 (41%), Gaps = 30/652 (4%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL---IVILIGFT 385
             M+ +    LL+  +  +  + +     +       +  P     +      V+ +  T
Sbjct: 176 RFMRVWGLGALLLIGFTFVLYYLLIRPFKMLSESAKHVGTPEFSTQVPWSASEVLSLQTT 235

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q     G   + +    +R   AV GS + +WDW+I    V  +     ++G     +
Sbjct: 236 LQQVHEHLGRAVKQLNDSEQRWLFAVEGSRNGIWDWNIRSGEVFLSDRWKEMIGYQPDEL 295

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
               + W   +H +D+      L  +V  +    +   R++  D  + W+  R   +  +
Sbjct: 296 EEVFQTWETRLHPDDKQAVLDCLQEYVSGKTKEFESVHRLQHRDGHYVWVFDRGMLVDWD 355

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTTILDLSATD 561
             G   R IGI  D++E +++   I     Q ++ G   +P  ++F+ +L+  L+   T 
Sbjct: 356 HLGRPTRMIGIHVDVSESERNHAAIAELVKQ-SVAGPKMLP--ETFMAQLSQYLNQ-RTS 411

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +++++++     N  L     + +L  L+ R+        ++A L   RF ++ 
Sbjct: 412 AGYWGALLLLNVETLGA-NGTLTSHELERLLSQLSARLSSYFAENIVVAHLELGRFALLA 470

Query: 622 ISENNSL-----KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM-LK 675
                       +    A  +++    P +  E +  + A+IG     S    +SE+ ++
Sbjct: 471 KELAADANMAGRRALALATELKQIATRPFHYGEHDFRLNANIGICLLDSVDTLASELAVR 530

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            AELAM HA+         +     RS      +   L  A+  ++L L++ P++ +   
Sbjct: 531 RAELAMQHAQSSEHAGCAFYHPDLERSQDPESSLLNRLERAIAENQLSLMFQPVVDMQ-G 589

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +IV  E L +W       +  ++F+ +AE   +I +++L +  R+ + I  ++ Q    P
Sbjct: 590 KIVSAEVLSRWHLADGEIVPVAKFIDLAERHGLIASLDLNVATRVCQLIKQFKQQGINLP 649

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + +NI++      E  E + AL  +     +++ +  +ES ++ +       +  L +
Sbjct: 650 -RLTLNISTLSFCQAEFVEQLVALTRRYELDDNQLGIELTESALLTSASFILPRISLLAE 708

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIE 910
            G++LTLD+FG     LS L + P   VK +       T       A+++S+        
Sbjct: 709 AGVALTLDNFGAGQGALSCLRHYPLREVKLDLHCAANLTNDASWSQALIQSV----HPFN 764

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             I+AK +      +  +R+GC + Q  ++A  L  N   +L+  R PL+++
Sbjct: 765 LPIVAKGVESPQQQQLFSRLGCTHFQGYNIARALSVNDFKQLVCPR-PLLRS 815


>gi|153836635|ref|ZP_01989302.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|149749984|gb|EDM60729.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
          Length = 860

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 121/644 (18%), Positives = 248/644 (38%), Gaps = 33/644 (5%)

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV---LI 378
                IY        A ++  +   IF   +    +      N+I     + GL      
Sbjct: 224 GNTLFIYLFATVGVVASVIATSTFFIFKRKVATRFSHFAEGINEIASQYQLEGLQSVKFD 283

Query: 379 VILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            + +   ++Q +      +Q  +    E+       S   +    I R+ V        +
Sbjct: 284 ELELATKLVQKLSENTSMTQLQLKDSMEKFGALYHSSSLGMLIV-IEREIVDANHRALEL 342

Query: 438 LGLASGSMHGPIRNWLPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           L      +       L  +     D      +       R    Q+E ++  +  +    
Sbjct: 343 LSYKKSDLLEQP---LDTLCPTTADECRVDAMYRELQHGRN---QFEAQMLDSHGETIDC 396

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
           +I    +   NG     + +  D++E K+  E I      D ++G  NR   L  L  ++
Sbjct: 397 LIEATLIQ-HNGHTALML-LLQDLSENKQQAEMIQKLTDFDPVSGFCNRPVILGALEELV 454

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                      + + I     K+I +V G  + D+ +  ++  + + L     + R+S +
Sbjct: 455 K----HQPNHFSFIYITSKSLKQIAEVYGHLIFDEAIQYISTLLRDHLGTH-QIGRISEH 509

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F +IL + +      + A  +   ++  I L    +++ +         +  +   +L 
Sbjct: 510 EFIVILPNASGHSDALEAANRLLNQLSYKIELSGIMLSLDSKAVMVDPKITHQSLEHLLL 569

Query: 676 NAELAMYHAKHRGGNHVESF-----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
              +A Y A+   G H+         +S      ++I  DL +A+    +   + PI+  
Sbjct: 570 ---VARYSAQSMSGRHMHEVLVADGELSEQAETSMIINRDLEVAIRQDNIIPYFQPIVNA 626

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RD 787
              EI+G EAL +W HP  G IS   F+ +AE+  +I  +   +L +    I      R 
Sbjct: 627 KSGEIIGFEALARWPHPTLGIISPLIFIPLAEQGKLIVELGESILNQSCDFIGKLNTKRH 686

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
              +PP+ + +N++++    + L   +Q++I +   S   + L  +ES++MG    S   
Sbjct: 687 SQGLPPLTVHVNLSAQHFYHSRLISFLQSMIEEHNISAGHLVLEITESMLMGGETESIHC 746

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905
           +  ++++G+ L LDDFGT  +  S +   P D VK + S +        A  ++R+I  M
Sbjct: 747 INEIKQLGVQLALDDFGTGYASFSSVCNFPLDIVKLDKSYVDEIETNDRAKTLVRNIANM 806

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           ++ +  TI+A+ +     +++L     D +Q  +   P+     
Sbjct: 807 SQELGLTIVAEGVETASQVRKLKVWNIDELQGFYFYKPMTREDA 850


>gi|331005320|ref|ZP_08328707.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
 gi|330420859|gb|EGG95138.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
          Length = 406

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 183/380 (48%), Gaps = 8/380 (2%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ ID+D +K++ND  G   GD++L ++  R+    +  D  ARL G+ F I+L    + 
Sbjct: 1   MLYIDVDDFKQVNDTYGHYEGDEILKAVAERMKASCRNTDSPARLGGDEFAILL-DCIDE 59

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 A  + ++++ PI + +  +T++ SIG A +  + +   ++LK A+ AMY AK  
Sbjct: 60  EDTNKTAEKILRAVSQPIIVGDYSLTISLSIGIAYYPKTAVNMQDLLKQADEAMYQAKQS 119

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G   +  F     +  +    ++  L LA++N++L L Y PI+R  D+ + GLE L +W 
Sbjct: 120 GKASLSCFSEEHDKEWKRIKQLEIMLPLAIKNNDLSLAYQPIVRSTDQSLYGLEVLARW- 178

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P    +S+ E + + E+L +    + +++         W          +  NI S  +
Sbjct: 179 DPVGFTVSAQELVNMIEKLGLFDDFHSWLINTALSQYAQWNAVGQGIQYCL--NIPSNHM 236

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L   +   +      P +I L  +E  +M NP+ S  LL  L++ G+  +L+DFG 
Sbjct: 237 HSEWLIYCLNNALKTYQIEPFQISLEITEKTLMSNPDFSHDLLNSLQEEGVQFSLEDFGA 296

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
               +S+L  +P   +K +   ++G  E      ++ ++  +  ++  +++A+ +  E +
Sbjct: 297 GNISMSHLSTLPLSVLKIDHQFISGINENKVNRKVVEAMTALGHSLGLSVVAEGVETEDE 356

Query: 924 IKELTRMGCDYIQDSHVASP 943
              +  +GCD +Q  +   P
Sbjct: 357 YNVVAEIGCDLMQGFYFGKP 376


>gi|327193252|gb|EGE60158.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 708

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 114/450 (25%), Positives = 208/450 (46%), Gaps = 11/450 (2%)

Query: 520 TEQKKSLE---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           TE +++L+    +   A  D LTG+ NR SF D L   L  S        +++++D+D +
Sbjct: 244 TEHRRTLDFEIKLTHLAHTDTLTGLGNRSSFNDALNG-LFGSLERTGAGFSMLLVDLDHF 302

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K  ND  G   GD VL  +   + +  +  D++ARL G+ F  +L   +++  +   A  
Sbjct: 303 KSTNDSFGHPAGDAVLAHVAAALQKTFRAGDVVARLGGDEFAALLPGISDAATLEGIAGR 362

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESF 695
              +IA   +   R + V+ASIG A           +++ A+LA+Y AK  R    +   
Sbjct: 363 AVAAIATECHFEGRLLPVSASIGGAVVPGHASDEPTLMRIADLALYAAKAKRNTAVIFDE 422

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              + R ++  +   L  A +  E  + Y   + L+    +G EAL++W HP+ G +   
Sbjct: 423 ASFAQRLEQNRLAAALAFAADRDEFVVYYQQKVDLLTSRHLGFEALVRWRHPQLGILPPG 482

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E   +I+A+   ++  + RD+ +W+         + IN+    L+ ++  + + 
Sbjct: 483 RFLPLME-GHLIQAMTRCIVNTVGRDLKAWKAAGLRAG-SVAINLPEALLVSHDGYDLIA 540

Query: 816 ALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           A +           +  +E V +    E+    + R RK G+S++LDDFGT  + L +L 
Sbjct: 541 AAVKANRLDWRDFAIEVTEDVFLNRGAEQIAETISRFRKHGVSVSLDDFGTGFASLVHLR 600

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S +    +      I+R+II +A+N+    +A+ I  E     L   GC
Sbjct: 601 DFPFDELKIDRSFVAEIGKDIRSEQIIRAIIDLARNLGKRCVAEGIEEEAQRGFLMTAGC 660

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +  Q    A P   ++ ++ L  + PL   
Sbjct: 661 EIGQGYLFAKPEPASAAVERLA-QNPLAVR 689


>gi|120556494|ref|YP_960845.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326343|gb|ABM20658.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 853

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 200/459 (43%), Gaps = 23/459 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++ +   ++  A    LTG+PNR S+  RL  ++    +    R  V++I +D    + 
Sbjct: 397 ARRAAELRLMDQALHHPLTGLPNRSSYEMRLNELI---RSQRGKRFGVVIIHLDNLYAVT 453

Query: 581 DVLGIAVGDDVLVSLTRR-------------IGELLKFPDILARLSGNRFGIILISENNS 627
             LG    D +L   ++              + +       LA L    F  ++   + +
Sbjct: 454 KTLGHRNTDRILELASKHYNAVIKDVPGAISLEQTDNRTFFLASLDPQTFAFVV-DADQA 512

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-H 686
           L +    +   + I  P++ L  ++ +   +G A + +    ++ +++ A +A    +  
Sbjct: 513 LSVPRIVLRSIEEIRYPVDFLGMQVPLNPQLGVAFYPTHGNDANTLIRRAVIAEGSDRAR 572

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             G         S+ +DR+ +  DL  A++++EL L   P + L    I G EALI+W  
Sbjct: 573 DRGIAYYKSSRDSYSADRLTLVSDLRHAIDHNELTLFLQPKLCLRTRAITGFEALIRWPG 632

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            +   +   E + +AE+  +IK +  ++L+          +        I +NI+  +L 
Sbjct: 633 RE-QPVRPDEIIAVAEQTGLIKPLTRWVLKEALEMRGRLLEIGWDAG--IAVNISPNNLR 689

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +    +Q L+         I    +E+ +M +P  S   L  L   GI L++DDFG+ 
Sbjct: 690 EPDFAVFVQRLMQSYQIHSGAITFEVTETSMMQDPTNSLRALNALDAAGIPLSIDDFGSG 749

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSY+  +P   +K + SL+T   E+     I+R+ I M  ++  T++A+ +  E  +
Sbjct: 750 YSSLSYIKQLPAGEIKIDRSLITDIAEREQDRVIVRTTIDMCHSLGYTVVAEGVEDEETL 809

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             L  MGCD IQ   +  PL FN ++  L    P    +
Sbjct: 810 SLLHDMGCDLIQGYFLTRPLPFNEMVDWLGNYNPQALRS 848



 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 42/376 (11%), Positives = 96/376 (25%), Gaps = 16/376 (4%)

Query: 48  SITRIYV-NQGEDFQVFTAADI-DGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLI 105
                      +      A +  D      +           W  F +     +    L+
Sbjct: 29  PAIEYLRLAPDDQRSPQQALESGDWQILNEQTPNFGYTRDQVWLKFPITRPQTTN---LL 85

Query: 106 VVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEI 165
            + +  L    F+    G  ++   T       +R       +F   +  G     +++I
Sbjct: 86  EITYPHLDRIDFYLLRDGEIQLNYQTGDRMLFSERPVEHPHFLFPFQLEAGHDYRILLKI 145

Query: 166 STPN--LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFA 223
            T       + LW    + +  +  +    +  G+      F    ++  R S+ +    
Sbjct: 146 DTDGAMQVPLRLWNNRSFFEKTSVESQVHALYYGILITAICFNLFVFLALRESIYLYYVL 205

Query: 224 MAWVVLGYISIDFG-FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV 282
                L  I    G     +     G        S        ++F   +L   +   ++
Sbjct: 206 STLGYLILIGTLNGITYQFIWPALPGLQSNAMVLSIPLALLFTLMFARSFLKLEQCSPQL 265

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIV---LYYTYFIIYHGMKGYERAVL 339
             +    I     L        +   +  R+ +A  +   L  T        +G  +AV 
Sbjct: 266 DRLILGTILLNGALALALATTVIDYGTGIRLAVALAMPSCLLLTVVGPIQWARGNPQAVY 325

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDI-----IQPALVGGLVLIVILIGFTVIQHVLATG 394
              AW  + +            +         +Q       +L+ + +   +        
Sbjct: 326 YTLAWGAVTLGSAITAANKYGLIATSFFSVYGMQLGSAFQAILLSLALAIRIYHERQEKV 385

Query: 395 YFSQGIFSDGERQSLA 410
              +      E +  A
Sbjct: 386 LAQEAELKALEARRAA 401


>gi|323492895|ref|ZP_08098037.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Vibrio brasiliensis LMG
           20546]
 gi|323312966|gb|EGA66088.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Vibrio brasiliensis LMG
           20546]
          Length = 732

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 101/433 (23%), Positives = 198/433 (45%), Gaps = 21/433 (4%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   A+ D L  IPN       L   LD  +        + +IDID +   ND  G
Sbjct: 316 LYSRLEQQAYTDPLLNIPN---LNSLLQHKLDDLSQ------VLALIDIDDFSVFNDSFG 366

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GDD+L+++  R+ +       L+R+  + F +I  ++N S +       +       
Sbjct: 367 HKLGDDLLMAVADRLTKAF-PTSFLSRVGSDVFALIGTNQNVSSQ------RINSVFQHN 419

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRS 702
             +  +   V AS+G    +SS I  S   K++++A+  AK  HRG     S  +     
Sbjct: 420 FVIDGQPFKVMASVGLVKLSSSDI-LSRRYKDSQVALKQAKTHHRGAAMTFSHDMGQNAR 478

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           DR+ +  +L  A++++ L+L+Y P   L   E+ G+EAL++W + +   +   +F+ +AE
Sbjct: 479 DRMQLLIELKQALDDNGLFLMYQPKYNLNSLELTGVEALLRWRNKQGDLVPPDQFIPLAE 538

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  M+  I  F+++R  +      D      I + INI+   L + +    +++ + +  
Sbjct: 539 QSGMMVNIGAFVVQRACQQFKQLLDSV-DGNITMAINISPAQLDEPDFIPILESALKQYA 597

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P +I+L  +E++   N      +L ++R++G  + +DDFGT  S LS L  +P   +K
Sbjct: 598 IKPQQIELEITETIAAKNLSALCEVLDQVRQLGCKIAIDDFGTGFSSLSILHKLPATRLK 657

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + + +    E+  +I + I+ + + +   I A+ I  E    +L    C+  Q    A 
Sbjct: 658 IDRAFVDAM-EEDCSIAKMIVNLGQTLGMQITAEGIETEFQHNKLKAFNCEEGQGWLFAK 716

Query: 943 PLGFNSILKLLKE 955
            +    ++  + +
Sbjct: 717 AMTMEQLIVFISQ 729


>gi|325832388|ref|ZP_08165362.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325486024|gb|EGC88479.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 1435

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 181/428 (42%), Gaps = 16/428 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+  R++F   ++T +            +M +DI+ +K  N+  G   GD  L  
Sbjct: 114 FDALTGLYTREAFFSAVSTAI---QAYPERSYCLMAVDIEHFKLFNEWYGEEAGDLFLEE 170

Query: 595 LTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + R +GE       +   LSG+ F ++L  +            +R  I        + + 
Sbjct: 171 VGRLLGEAAVESGGVSGYLSGDDFCMLLPCD------EGMIETLRARITQSALHHGKGMG 224

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711
              + G        +    M   A LA+   K         +         D   +  ++
Sbjct: 225 FLPAFGLFRIDDRSLPVGIMYDRALLALASVKGNYAQRFRWYDDGMLREIKDDHSLLLEV 284

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  E+     P   L   +IVGLEAL++W HP+ G I   +F+ + E   +I A++
Sbjct: 285 QQALEKGEITFYAQPKCNLDTGKIVGLEALVRWMHPERGLIPPIQFIPMLERNGLITALD 344

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E + R + +W D     P+ I +N++ +DL   ++    + L+ K    P  + + 
Sbjct: 345 LHIWEEVFRALRAWMDA-GQAPVPISVNVSRRDLYALDVLGTFEGLLEKYDIPPRLLAVE 403

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + + E    ++     +GIS+ +DDFG+  S L  L  +  D +K +  L+   
Sbjct: 404 ITESAYVEDCELIVDIVEGFHDLGISVHMDDFGSGYSSLGMLKDVNVDVLKLDMKLLDAI 463

Query: 892 TEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +     +IL +II MA  ++  +IA+ +  E   + L +MGC Y Q      P+    
Sbjct: 464 DAQSRKARSILEAIIGMANLLDIRVIAEGVETESQRQLLVKMGCLYGQGYFFYKPMPKAE 523

Query: 949 ILKLLKER 956
              L+  R
Sbjct: 524 FEPLIANR 531



 Score =  178 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 124/359 (34%), Gaps = 44/359 (12%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD--IATIL- 438
            I   ++  V       Q ++    +    +  +G   WDWDI  +R+  +    +  I  
Sbjct: 1081 IALCLVTDVTTMKNQQQELWLTKRKLEGVLDQAGVQSWDWDINSNRLVLSRSELMERIFA 1140

Query: 439  -------------GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFR 484
                         G    +M         ++  + +  FR         R R R  +E  
Sbjct: 1141 GLSRFEDDMLVVDGFDPETMR------FRFVPPDYQQAFRDSFRGVRTARDRQRSVFEIP 1194

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI--------------- 529
                D    W+ +    + +     +R +G   D+T+++                     
Sbjct: 1195 FTFEDGAPVWIEVACETVRDERDRPVRAVGYYLDMTDRRNESLQNKANSEALRQLREQSF 1254

Query: 530  --LCNAFQDNLTGIPNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              L  A  D LTG+ NRQ+ + ++   L    +    +    ++++D+D +K  NDV G 
Sbjct: 1255 QLLKMAKTDALTGLHNRQAAIPKIEERLRAVEAGELGDASCALIMLDLDSFKLANDVFGH 1314

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            A GD V+V +   + E     D++ R+ G+ F +     +        A A+R      +
Sbjct: 1315 AYGDQVIVHVAEALKESF-PGDVVCRMGGDEFLVWCEDVDEGALEDRIASALRAMEVERV 1373

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                R    +AS G+        +  ++ + A+ A++  K  G      +         
Sbjct: 1374 E-DGRTFLFSASAGYVLVPQEGFSFDDLYQKADSALFSVKMGGKRSCSRYWSGMKSVRC 1431



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 399 GIFSDGERQSLAVLG--SGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL- 453
            +  +  R +LA+    S   +     +           +  +LG  +        +W  
Sbjct: 705 ALGEENRRTALALSAELSPGGMIGGYCEPEFPLYFANAAMVELLGYDTYEELAAGIDWRV 764

Query: 454 -PYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              IH +D  +    LD    Y  G      +R+   D  + W + + R +   +G +  
Sbjct: 765 GNTIHPDDLASV--ALDIGPEYYVGLEYTTTYRMARKDGTWFWTLDKGRVVEAEDGRLA- 821

Query: 512 YIGIANDITEQKKSLEG 528
            +    DITE     + 
Sbjct: 822 IVSACTDITEVMAVQQQ 838



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           D +  +     + G     +     + ++  +H +DRD+    + +      G    E+R
Sbjct: 874 DFLYMSDRFLDMFGYTREEIKELFDDKYMLMVHPDDRDSVAKGVTALREGTAGSDPLEYR 933

Query: 485 VRAADNQFHWMIIRIRPMSNSN 506
           +RA D  + W+I + R +   +
Sbjct: 934 MRAKDG-WRWVIDQSRFLEYDD 954



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 41/147 (27%), Gaps = 4/147 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASG 443
                        +            +     +++D +D   + ++       + G+ + 
Sbjct: 541 ADSIERFRIRDLIESRVLSDAMLDDIL--GPLVLYDLYDGEVELLSANEQYCQLNGVNAV 598

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +H     +      +D D      +              R    D     +++ +  + 
Sbjct: 599 DLHELRSTFARRAFESDWDEVMEAFEQARENVPNGAVVVVRRMRPDGSTAHLLVHLLFLR 658

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
              G  L Y+G   D+T +++    + 
Sbjct: 659 EHEGHYL-YLGSLRDVTRERQQARQLE 684


>gi|325288310|ref|YP_004264491.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324963711|gb|ADY54490.1| diguanylate cyclase/phosphodiesterase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 605

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 96/447 (21%), Positives = 196/447 (43%), Gaps = 9/447 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +D     ++L+ +   A  D LTG+ N ++F   +  ++         +  ++  DI+
Sbjct: 161 IISDHFIHLQTLQKLQKVASTDILTGVHNFEAFHTEMEKLIS---RHKEKKYAIITCDIE 217

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD V+ +L   I + L   +++ R+SG+ F ++   E+ +  +    
Sbjct: 218 QFKDINDTLGHDNGDRVIRNLACSIRDGLTDVELIGRVSGDIFMVLAEYESQATFLKRL- 276

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
                  A     L+  + +  ++G           S ++  A  A   AK    + +  
Sbjct: 277 KQWHNGFAALNRSLQPAVEICVAVGIYLIQPEDTVISSLIDKANAARKLAKGNRKSTLFF 336

Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +  S  +   +   ++  +  +++N    +   P  +L    I G EAL++WDHP  G +
Sbjct: 337 YNASLHQQLMLVKELELSMLSSLQNGNFMIFLQPKYKLSGRTIEGAEALVRWDHPNLGFL 396

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             ++F+   E+   I  ++ ++ E+I   + +W    + P I I +N +   LL  +   
Sbjct: 397 LPADFIPHLEKNRFILDLDFYVFEKICLLLKTWIA-GHKPVIPISVNFSRLHLLTRDFTA 455

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + +++      P+ +++  +ES  +        +   L+K G+++++DDFG+  S L  
Sbjct: 456 RLISIMQSYGIPPNLLEIELTESAFIDQSVDLLKVAYSLKKQGMTISMDDFGSGYSSLLA 515

Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K +    +    T K   I+R  + MAK +   ++++ I        L  +
Sbjct: 516 LKDLPVDVLKLDKGFFSKGLITNKDEIIIRGFVKMAKQLHLRVVSEGIETAKQADFLEEI 575

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GCD  Q  + + PL       LL    
Sbjct: 576 GCDLAQGYYFSKPLPVRGFEALLANEL 602


>gi|325263581|ref|ZP_08130315.1| putative GGDEF domain/EAL domain protein [Clostridium sp. D5]
 gi|324031290|gb|EGB92571.1| putative GGDEF domain/EAL domain protein [Clostridium sp. D5]
          Length = 753

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 98/439 (22%), Positives = 194/439 (44%), Gaps = 11/439 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           QK S + +   A+ D +TG  +   F+     +LD  A   + +  + V++I +++ IND
Sbjct: 312 QKGSRKMLERAAYVDEVTGDASYAKFMLDAQRMLDTYA---DKKYALAVLNIKRFQYIND 368

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD  L    + +   +   +  AR+  + F ++L+      K+      + + I
Sbjct: 369 LYGYEEGDRALRRFMKALRVEIGAYECAARMQSDHFAVLLVY-QEQEKLEKRLDTILEKI 427

Query: 642 AMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRV 697
                  + +    +    G             ML  A +A+           +  +  +
Sbjct: 428 ESEADNRIGDTPYVLKVKAGVYMVQQPGEMLESMLDRASMAVRSEYNTEIKHCNFYNETI 487

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S       I++    A++N E YL Y P  R+ ++   G EAL++W++PK G +S +EF
Sbjct: 488 RSRMLKNREIEDCFAEALKNQEFYLCYQPKFRVAEKRWCGAEALVRWNNPKSGVVSPAEF 547

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E    I  ++ ++LE + R +  W  +     + + +N++   L      E    +
Sbjct: 548 IPVLEHSGGIVELDEYVLEMVCRQMRQWLGEGLGV-LPVSVNVSRLHLYRLNFVEQYLTI 606

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +       I+L  +E+ +  N +     L +LR  GI + +DDFG+  S ++ L  +P
Sbjct: 607 IDRYQIPHELIQLEMTETALFSNEDILSETLEKLRSKGIRILMDDFGSGYSSVTMLKSMP 666

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S++    +      IL SII +A++++ ++ A+ +  +     L  M  D I
Sbjct: 667 IDTLKIDKSMVDSVEDNEKVRLILESIIKLAQSLKLSVTAEGVENKAQYDILKGMHIDNI 726

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q  + A P+      ++LK
Sbjct: 727 QGYYCARPMAAEQYAQILK 745


>gi|261251047|ref|ZP_05943621.1| predicted signal transduction protein [Vibrio orientalis CIP
           102891]
 gi|260937920|gb|EEX93908.1| predicted signal transduction protein [Vibrio orientalis CIP
           102891]
          Length = 589

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 112/547 (20%), Positives = 226/547 (41%), Gaps = 15/547 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V    D ++            P   +  G+ SG  H  +++WL  +H  DRD+ R  + 
Sbjct: 51  MVDVMNDGIFYMADTEHVCLYNPSFYSKFGIKSG--HTCLQDWLDLVHPLDRDSLRDEVG 108

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +     ++  ++R+R+ + Q+ W+          NG     IG   DI+++K     +
Sbjct: 109 DHIQDDESKVTTQYRIRSKNGQYVWLEGTA-ITKTVNGK-RFMIGCHKDISDRKLMETYV 166

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
             ++ +D  +G+ N Q     L  +        N R  +M + +D  +    V G  +  
Sbjct: 167 QQSSLRDGASGLSNEQKLAMDLDDL------SANERYHLMYVQLDNARSYQVVYGSQIVR 220

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L  L   +         L R+  + F I+L  + +   + + A+ ++ +    I  ++
Sbjct: 221 NMLSHLANTLNRFPDKFVDLYRMQSHDFAILLYGQYDEEDLKELALRIQNAYQESIKAID 280

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
              T   SIG     S      E++K A      A  +    +  +  S+         I
Sbjct: 281 LLFTTDISIGIYPDISRHENPGEVVKIAAQTSQFANKQKDCFIRVYAGSTKAKVDRHFYI 340

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +++L  A+ N +L + + PII    + I   E+L++W   + G I   EF+ +AE+  +I
Sbjct: 341 EQELANALNNGKLSVKFQPIICSQSQRIASFESLVRWKSEELGEIYPDEFISVAEKNSLI 400

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+ ++  + I  ++   +     + +N++   LL  +  + +  L ++     S 
Sbjct: 401 SELGYFVFDKACQFIKQYQ-LTHTGDARVNVNVSVLQLLSQQFPQELMRLANQHGIKSSS 459

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I L  +E++ + + + +   L  L+++G  L+LDDFG   S L+    +P   +K + S+
Sbjct: 460 IVLELTETISLDDNKSAITQLNVLKELGFQLSLDDFGAGYSSLNSFFDLPLSQIKIDKSI 519

Query: 888 MTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
              S E  +    L  I  +  +    I+ + I      +  T MG  Y+Q    + PL 
Sbjct: 520 AWRSLENPVTFEYLSFITNLCNSYGIDIVIEGIEDATMQRVFTDMGASYLQGYWFSKPLS 579

Query: 946 FNSILKL 952
             S    
Sbjct: 580 LASASHY 586


>gi|158312971|ref|YP_001505479.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158108376|gb|ABW10573.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 868

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 202/438 (46%), Gaps = 15/438 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR----PTVMVIDIDKYKK 578
             +   I    F D LT + NR  F  RL   L       + R      ++  D+D +  
Sbjct: 409 HAAEREIHHRVFHDPLTELANRALFQHRLRGALTDRWRSGDDRSGGDIAILYCDLDDFSA 468

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG A GD +L ++ +R+   ++  D++AR+  + F ++L   + S +       + 
Sbjct: 469 LNDSLGPAAGDHLLRTVAQRLRHCVRTTDLVARVGADEFAVLLAGGDESPEA--VGERVL 526

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            ++  P+ +  +  ++ AS+G A    +  T   +L++AE A++ AK  G N + ++R  
Sbjct: 527 AALRHPMAVGGQPRSIRASVGLAVARRTHETGESLLRHAETAVHVAKCSGKNRLVTYRPG 586

Query: 699 SF-----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        +   L     ++   + Y PI+RL D   V LEAL +W  P  G + 
Sbjct: 587 MASPEAGAHLADALATALRRGGRSAGFDVHYQPIVRLRDGHPVALEALARWTDPGRGPVP 646

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AE   M+  ++  +L R   ++           + + +N+++  + D  L + 
Sbjct: 647 PGTFVAAAENGGMVGLLDDLVLTRACTEVA--LAYPAGSRLRLHVNVSASRITDTRLRDS 704

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +++ +   P R+ +  +E+  + +   +  +L  +R +G+++ LDD G   + L+ L
Sbjct: 705 VARVLAASRLDPRRLVVEVTETSRIADLSAAADVLSGVRDLGVAIALDDVGAGNTSLAVL 764

Query: 874 GYIPFDTVKFNGSLMT-GSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D VK + +L+       R++ L RS+I +A  +   ++A+ I  E  + EL R+G
Sbjct: 765 HRLPVDVVKLDRTLIEFPMDGSRVSNLRRSMIDVAHALGAVVVAEGIERESQLVELDRLG 824

Query: 932 CDYIQDSHVASPLGFNSI 949
           C+  Q    A P   + +
Sbjct: 825 CELGQGFLFARPGPLSGL 842


>gi|285019720|ref|YP_003377431.1| two component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474938|emb|CBA17437.1| putative two component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 993

 Score =  355 bits (911), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 109/593 (18%), Positives = 224/593 (37%), Gaps = 25/593 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD--IVWDWDIV 424
              A    +     L     +Q V         +     +  L    +     V+  D  
Sbjct: 415 WLAARGALVQTQDGLRMTGAVQDVTERLAVQARLLDAERQFRLMFDRNPLPYCVFAVD-S 473

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
              +          G +     G     L   H   R++   +L      R G    +  
Sbjct: 474 LRFLEVNRAAVGHYGYSRDEFLGMSLLDL---HP--REDAVRLLCDVRTSRVGFSAPDVW 528

Query: 485 V-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
             R  D     + +    +  + G   R I +A ++T++ +    +   A  D  TG+ N
Sbjct: 529 THRRKDGSLLSVCVHSADLEFA-GMPARLI-LAEEVTQRLEHERELAFRASHDVATGLFN 586

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
             +  + L                +  + +     I D LG A GD V  ++  R+  L 
Sbjct: 587 PHALAEALRA-------HKCHAYAIAYVQLRGLALIGDTLGRATGDAVRCAVAERLRGLG 639

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +   + A      F + ++       +     A+ ++++ P+   +  + + A IG A  
Sbjct: 640 ERFGLAAHQPAEYFVLAVL---EPQALEQALQALLEAMSAPVQGGDFSLQLQAHIGVALC 696

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-VSSFRSDRVMIKEDLCLAVENSELYL 722
               + + E +  A  A + A+  G + V   R +S    +R+ +   L  A+E  E  L
Sbjct: 697 PEDAVDAEEAIGCAAQAAHAAQADGCSLVRFDRSMSVRIGERLRLAGRLHEAIEREEFVL 756

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + PI+         LEALI+W       I   +F+ + E+  +I  +  +++       
Sbjct: 757 YFQPIMDADSGAPRVLEALIRWPQADGSFIPPDQFIQVCEDTGLILPLGRWVMRTA-AQA 815

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                +     + + +N+++    D +L   +    +        + L  +ES +M  P+
Sbjct: 816 RRELARHGWSDLPVAVNVSALQFFDGDLVADLVQACADAELGIDGLHLELTESSLMRQPQ 875

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900
           ++R +L RLR +G+ + LDD GT  S ++YL  +P DT+K + S + G        +I  
Sbjct: 876 QAREVLQRLRALGVRVALDDVGTGFSSMAYLRDLPLDTLKIDRSFIDGVDGDARNASICD 935

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +++ +  ++   ++A+ +  +  ++ L   GC  +Q   +  P     +L++L
Sbjct: 936 ALLTLGSSLGLDVVAEGVETQAQLQWLRAHGCGSVQGYLLGRPAPLEQVLQML 988



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 31/251 (12%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           ++    +   +              L+  L    +L      +      +  Q +    E
Sbjct: 272 VVAGLGVREALVRWWWFVAAAASAYLLYLLGFAYLLGSLRRAER--RQRHLLQRLSRGDE 329

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
              LA    G   W  D  R  ++ +     + GL    +   +  +L  +H  DR    
Sbjct: 330 ELRLACDMGGIGTWCIDTERRLMSLSEPTGAMFGLQRMQL--SVDEFLAQVHGEDRMRVA 387

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + +  V + RG     +R+   D +  W+  R   +   +G  LR  G   D+TE+   
Sbjct: 388 QLYEDAV-HGRGEYNAVYRIHMPDGRVRWLAARGALVQTQDG--LRMTGAVQDVTERLAV 444

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---- 581
              +L                          L    + L   V  +D  ++ ++N     
Sbjct: 445 QARLL-------------------DAERQFRLMFDRNPLPYCVFAVDSLRFLEVNRAAVG 485

Query: 582 VLGIAVGDDVL 592
             G +  D+ L
Sbjct: 486 HYGYSR-DEFL 495


>gi|146294998|ref|YP_001185422.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
 gi|145566688|gb|ABP77623.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens CN-32]
 gi|319424452|gb|ADV52526.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Shewanella putrefaciens 200]
          Length = 816

 Score =  355 bits (911), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 126/600 (21%), Positives = 253/600 (42%), Gaps = 27/600 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
            V+ +  ++ +     G   + +    +R   AV GS + +WDWDI    V  +     +
Sbjct: 228 EVLSLQSSLQEVHARLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDISTGEVFLSDRWKEM 287

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           +G A   +    + W   +H  DR+     L  ++  +    +   R+R  D  + W++ 
Sbjct: 288 IGYAPDELECVFKTWESRLHPEDRETVLDCLQEYISGKSKEFESVHRLRHRDGHYIWVLD 347

Query: 498 RIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTT 553
           R   +  +  G  +R IGI  D++E +K+   I       ++ G   +P    F++RL+ 
Sbjct: 348 RGMLVDWDHLGRPMRMIGIHVDVSESEKNHAAIAELVEH-SVAGHRMLP--AVFMERLSQ 404

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L     +      +  I+++    +N +      + +   +  R+        I+  L 
Sbjct: 405 FLTQ-EDNSGHWGGLFFIEVESLGVMNSLTSHEA-ERLFTQIGARLSSYFTDNIIVGHLE 462

Query: 614 GNRFGIILISENNSLKIA-----DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
             RF ++    +   ++A       A  +R+ IA P +  +    + A++G       + 
Sbjct: 463 LGRFTLLAKELSIDAEVAARRTLALATELRQIIARPFHYRDHHFELNANVGIYLLDPVET 522

Query: 669 -TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
                +++ AELA  HAK  G      +             ++ +L LA+E+ +L L++ 
Sbjct: 523 LEPLLVIRRAELAQKHAKLLGQCGCAFYHSELDVRQSRDELLQHELKLAIEHEKLSLMFQ 582

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+ +   EI+  E L +W       +  SEF+ +AE   +I  ++L + +RI   +   
Sbjct: 583 PIVNVA-GEILSAEVLSRWYLANGDVVPPSEFIALAERCGLIAGLDLSVAKRICILLQQA 641

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            +Q    P  I INI++      +  E + ALI       +++ +  +ES ++       
Sbjct: 642 DEQGLSLP-RITINISALSFCQIDFIEHLIALIRTYSIRTNQLGIELNESALLLQDAFVN 700

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSI 902
             + +L +IG+ + LD+FG+  + LS L   P   VK + S +   T     + A+++S+
Sbjct: 701 ERITQLVEIGVPVILDNFGSGHAALSCLNQYPISEVKLDLSCVASITSTQIWQKALIQSV 760

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +P     +  ++AK I      +  T +GC   Q  + +  L F    +L      L+++
Sbjct: 761 LPF----DLCLVAKGIESAQQQQIFTALGCHAYQGYYYSRALNFADFKQLFHS-NSLLRS 815


>gi|311105406|ref|YP_003978259.1| diguanylate cyclase [Achromobacter xylosoxidans A8]
 gi|310760095|gb|ADP15544.1| diguanylate cyclase, GGDEF domain protein 8 [Achromobacter
           xylosoxidans A8]
          Length = 460

 Score =  355 bits (911), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 93/425 (21%), Positives = 188/425 (44%), Gaps = 15/425 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ N Q    R    L+ +      R    ++  ++Y +I+ +L       +LV +
Sbjct: 38  DELTGVLNHQELHRRARAWLNNAEGRSR-RGAFFLVSFEQYAEISAMLRAGEDQALLVQV 96

Query: 596 TRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             R+G + +    ++AR   + F +      +    A  +  + ++++ P  L  R +  
Sbjct: 97  ANRLGLICRSMGGMVARSGTDAFTVCAPDV-DETGAAQVSAKLLEALSAPYELGGRPLMA 155

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLC 712
              +G A +     +  E+ +  ++A+   K RGG     F       + D+  ++ DL 
Sbjct: 156 MFRVGTALYPEHGRSVEELQRCVQVALLPLKERGGPGWNLFDFRMLARQRDQQGLENDLR 215

Query: 713 LA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           LA       +  L Y P+       + G EAL++W HP  G++S +  + +AE   +I  
Sbjct: 216 LALTTPAMEQFELYYQPVCDSGTGMVQGCEALLRWHHPVLGSVSPAVTIELAERSGLIVP 275

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++LER       W          + +N++ K + ++ L E +   ++    +P ++ 
Sbjct: 276 LGAWILERACTQAALWPAT-----WRVHVNLSVKQMNEDGLVELVSDALAAANLAPRKLV 330

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES+ + + ER   +L  LR +GI + LDDFG   S L++L  +P D VK + S ++
Sbjct: 331 LEITESLFILHYERHVKILNTLRAMGIGVALDDFGCGYSSLNHLRCLPIDWVKIDRSFIS 390

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     ++ ++  + + +   ++A+ +  E   + L  +GC  +Q   +  P   +
Sbjct: 391 ALESDAGSREVVSALFGLCQAMHLPVVAEGVETEGQREILKSLGCRVMQGFLLGRPAPAS 450

Query: 948 SILKL 952
            I  L
Sbjct: 451 EIQAL 455


>gi|295107413|emb|CBL04956.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 563

 Score =  355 bits (911), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 191/428 (44%), Gaps = 14/428 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D++  + ++  F  R+  IL     +      ++  DI+ +K IND +GI  GD +
Sbjct: 140 QARYDDIADVYSKSYFYQRVRDIL---VRNPATSYDILCSDIEDFKLINDTIGIVAGDRL 196

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  + +    LL    I  RLS +RF  ++    +          M       I      
Sbjct: 197 LRQVGKLHASLLGDHGICGRLSADRFACLIEHREDYSD------EMFTQSTARIKSGFGN 250

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKE 709
             V    G       ++   +M   A LA+   K + G H   +      +   R  I +
Sbjct: 251 RNVVLKYGIYRVEDREVPVEQMCDRALLAVQSIKGQYGKHFAFYDDKLRDTLLHRQAITD 310

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+ + +  +   P  R+ D  + G EAL++W+HP+WG    SEF+ + E    I  
Sbjct: 311 GMERALASGQFEVYLQPKFRIADGSLSGAEALVRWNHPEWGLQPPSEFIPLFERNGFITR 370

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++ ++ E+    +  W D    P I + +N++  D+ D ++   +  L+ +    PSR+ 
Sbjct: 371 LDQYVWEQACSLMRRW-DLMGFPHIDVSVNVSRTDIRDMDMARVLGGLVERYGLDPSRLH 429

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES    + ++    L RLRK+G  + +DDFG+  S L+ L  +P D +K +   + 
Sbjct: 430 LEITESACKDSADQLVETLHRLRKMGFVIEMDDFGSGYSSLNMLTEMPLDVLKLDMKFIQ 489

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +     +IL  I+ +A+ +E +++A+ +     ++ L   GCDY Q   +A P+   
Sbjct: 490 TEVANPSGDSILGFIVSLARWMELSVVAEGVETREQLERLQADGCDYAQGYFLARPMPVK 549

Query: 948 SILKLLKE 955
           ++ +LL  
Sbjct: 550 ALEELLAS 557


>gi|323497820|ref|ZP_08102834.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio sinaloensis DSM 21326]
 gi|323317167|gb|EGA70164.1| C-di-GMP phosphodiesterase MbaA repressor of biofilm formation
           [Vibrio sinaloensis DSM 21326]
          Length = 782

 Score =  355 bits (911), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 209/456 (45%), Gaps = 17/456 (3%)

Query: 506 NGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + +I R      D+  E   S +     A  D+LT + NR  F   +   +  +    N 
Sbjct: 310 DDEIGRLSVRFYDMYKELNSSYQKTKAMAENDHLTQLANRYQFQMFVERTI--ANKLMNS 367

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-------ILARLSGNRF 617
           R  ++ ID+D +K +ND  G  +GD +LV+    I +     +       + ARLSG+ F
Sbjct: 368 RAWILYIDLDNFKYVNDKYGHQIGDSLLVNFAEHIRQRCNEYEHKYGVKCLAARLSGDEF 427

Query: 618 GIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            + + S + +     + A A+   I    N       +TASIG AS+       + +L N
Sbjct: 428 AVFISSSHPHISYAPEIAKAVLDPIQNSANSPLGNFPITASIGIASYPEDGQDLTNLLSN 487

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N +  +     +  R    I+  L     + E  L+Y P       E
Sbjct: 488 ADTAMYQAKRAGKNQIAHYSKELDQIVRRRSQIERALRACNLDQEFELLYQPYFDRSGLE 547

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + GLEAL++W+ PK G ++ SEF+ I+E++ +   I+ ++++R  RD  + +      PI
Sbjct: 548 VKGLEALLRWESPKLGTVNPSEFIPISEQIGLFGTIDRWVVKRAFRDFATIQACF-EHPI 606

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + IN++S +L   +L + +  L  +   +P  I    +E+    +       L  L ++
Sbjct: 607 QLSINLSSAELDSLQLAQDINLLAQQYTVTPELIDFEITETFASDSQSYLL--LYELSQM 664

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTI 913
           G  LT+DDFG+  + ++ L   P   +KF+   +   T+     +++ ++ +  +    +
Sbjct: 665 GFKLTIDDFGSGYTSITQLVEYPVQKIKFDREFLEALTKTNNQTVVKPLVDLCHSQSMLV 724

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            A+ I  +   + L    CDY+Q  +++ PL    +
Sbjct: 725 TAEGIESKEMHQWLANNQCDYMQGYYLSPPLSVEQL 760


>gi|83644466|ref|YP_432901.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83632509|gb|ABC28476.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 743

 Score =  355 bits (911), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 113/597 (18%), Positives = 231/597 (38%), Gaps = 54/597 (9%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI----ATILGLASGSMHGPIRNWL 453
           + I        L    S  +       ++    +  +    A +LGL    +        
Sbjct: 162 REIARAKRGLQLIAESSDSVY----SAKNLQEFSARMLAELAKLLGLPPDGLVCAKAYTT 217

Query: 454 PYIHINDRD------------------------NFRTILDSFVGYRRGRLQYEFR---VR 486
                 +R+                        N R  L   +  R+   + ++      
Sbjct: 218 SR--PENRECYIIGAAGIYSNCVGKTLIEFEAPNVREHLHQCLQGRKSIHEKDYTCLFFL 275

Query: 487 AADN--QFHWMIIRIRPMSNSNGDILRYIGI-ANDITEQKKSLEGILCNAFQDNLTGIPN 543
                  +   I    P+  +  +++R   +   +  +       +   A++D+   IPN
Sbjct: 276 DPIGAADYAAYIETGHPLDATEQELIRVFSLNIANGLQNVSLFNRLERLAYEDDTLRIPN 335

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R + L RL+ IL     +      +M++DID +  IN VLG   GD VL  ++ R+ +  
Sbjct: 336 RNALLRRLSQILSRPDRNQ---YQLMLVDIDGFASINSVLGARYGDSVLQLVSSRLKDAF 392

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                ++R+  + F ++   E+ S    D       +    + L      +  S      
Sbjct: 393 SGTIQVSRVKDDLFAVLGSVEDVSADKLDGLFNGLSASEKSLKL------LNISSVTYPL 446

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELY 721
           +    +  E++  A +A+  AK RG     ++   +  +   R  + + L  A+    ++
Sbjct: 447 SHPDSSPPEVITRAGIALKQAKKRGIRQHTTYDPETEAAAASRFHLLQALQDALTKQSIF 506

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
            V  P + L  +++ G+E L +W      +I   +F+ +AE   +I  +   +  +    
Sbjct: 507 AVLQPQVDLETKQVTGVEVLARWRLEDGTHIRPDQFISLAETSGLILPLGQQIFTQSCAA 566

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
               ++      I I +N +      +++ + +          P +I++  +ES VM N 
Sbjct: 567 CRRLQEA-GYRDIRIGVNYSVIQFEQDDMVDTLIRSAEAVGIRPQQIEVEITESTVMHNF 625

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAIL 899
              +  L RLR+IG+++ +DDFGT  S L+YL  +  D +K + S +   T  +   AI 
Sbjct: 626 ALVQEKLERLREIGVTVAIDDFGTGFSSLAYLSRLAVDRLKIDKSFVDKVTTDKGAAAIA 685

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +++I + ++    IIA+ +  +   + L   GC  +Q    A P+  + +L  L +R
Sbjct: 686 KTVIQLGESFNLDIIAEGVETKEQAQWLLDNGCSSVQGYLYARPMTVDVLLPWLAQR 742


>gi|262164660|ref|ZP_06032398.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262027040|gb|EEY45707.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 616

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 105/459 (22%), Positives = 204/459 (44%), Gaps = 30/459 (6%)

Query: 515 IANDITEQKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           IA+D+ E K+                  DNLTG+ NR    D+L +++  S        T
Sbjct: 156 IAHDL-ECKQMTARSQSLVNQLRHEISHDNLTGLMNRNDLADKLNSMIRCSQQH----FT 210

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +DID ++ IND+ G  +GD VL  +   I + L       R++ + F  +      +
Sbjct: 211 LAFLDIDGFRSINDLHGHYLGDLVLKFVADAIEKALSEEGHAFRVAADEFAFL----TTA 266

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +      A+   +A      +R I ++ SIG A +   K+T+ ++L NA LA+   K  
Sbjct: 267 HEPMKVCQAILNQLAQDYVDQDRRIKISVSIGIAKYGGEKLTADQLLFNASLALKECKRN 326

Query: 688 GGNHVESFRVSSFRSDRVM------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
              H+  +                 ++ +L      +ELY+V  PI++    +    E L
Sbjct: 327 HNTHIRFYDTLLSNQYYRRTQIIDALRHELSKPTNQTELYVVVQPIVKRNQPDWDYFEIL 386

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +W     G +S  EF+  AE+  +I  +   +LE       +  +Q+    + + IN +
Sbjct: 387 TRWKSSSLGFVSPLEFIEAAEQSGLIVELGEHILELAC-IAKTELEQSLGHKVRLSINCS 445

Query: 802 SKDLLDNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +L ++    E +   I    +      +  +E+V++     +R +L  LR++G  + L
Sbjct: 446 ADELTNSNRYLEHLLKTIKIYGFRADEFTIELTETVLLSKAAEARSILTILRELGFKIAL 505

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+Y+   P D +K + + +      +   +++  II +A  ++  ++A+ +
Sbjct: 506 DDFGTGYSSLNYIHSYPIDCIKIDATFVHNLLTNQTSESVVWLIIQLANQLKLDLVAEGV 565

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
                +++L  MGC+ IQ  + + P     +  ++ ER+
Sbjct: 566 EDPKALEKLYLMGCEQIQGYYFSKP----DLPSVIAERW 600


>gi|224825462|ref|ZP_03698567.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
 gi|224602383|gb|EEG08561.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Lutiella
           nitroferrum 2002]
          Length = 792

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 200/438 (45%), Gaps = 14/438 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   I   +  D LTG+PNRQ+    +   ++  A   +    V+ + ID + +IN  L
Sbjct: 353 RAEARIRYLSDHDPLTGLPNRQNMQALIQGRIEQGA--GSEAVVVIALAIDSFHQINARL 410

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL    RRI + L     + R+   RF I         ++ +    + + +  
Sbjct: 411 GHEGGDLVLCEAARRIEQCLGDTGRVGRVGAARFVITSGYN---DRLENLLDRLLQVMRE 467

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P   L + + V +S G     +    ++ +L+ AE+A+  AK  GGN    +        
Sbjct: 468 PAECLGQWVDVRSSCGVVVSHAD-SDAATLLRRAEVALARAKESGGNQYRHYDQRMDEEI 526

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++     A+ N+ L L Y P I L  E + G+EAL++W       +S  EF    
Sbjct: 527 HRIHSLRAAFAEALANNALELFYQPKIDLRSEVLQGVEALVRWKRQD-QFVSPGEFFPAI 585

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +++ ++ ++L +  + I  W+ + ++  I + +N+++  L       G++ L++  
Sbjct: 586 EHTDLMRELDWWVLRQSLKQITDWKARGHV--IKVSVNLSAMTLKQEGFLPGIELLLASY 643

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   ++L   ESV     E+    L R R++GIS+ LDDFGT  S L +L  +PFDT+
Sbjct: 644 PDAAGLLELEVLESVSQKEAEQVVHKLERCRRLGISIALDDFGTGASSLVHLQQLPFDTI 703

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +          AI+ S++  A+     ++ + +  +     L  +GC   Q   
Sbjct: 704 KMDQSFVRVLLEAPGNEAIIHSMVAFARYTGRKLVVEGVESKAIWLRLLELGCTVGQGYA 763

Query: 940 VASPLGFNSILKL-LKER 956
           ++ P+    +++  L+++
Sbjct: 764 ISRPVPAEVLIEWALQQQ 781


>gi|284991787|ref|YP_003410341.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
 gi|284065032|gb|ADB75970.1| diguanylate cyclase/phosphodiesterase [Geodermatophilus obscurus
           DSM 43160]
          Length = 817

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/667 (20%), Positives = 266/667 (39%), Gaps = 35/667 (5%)

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV---L 339
            +     +A   +   +              ++A       Y  +Y  + G  RA     
Sbjct: 72  WWAMTLSLAWGLVGNLVYSLLVAPMPEEPFPSIADFCYLVYYVPLYVALIGLIRARVSRF 131

Query: 340 LIPAWI-LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
               W+  I        +A+   L   +         VL  +      +  +      S 
Sbjct: 132 HASMWLDGIVGALGAGAVAVAVLLGPALEVTEGDVAAVLTNLAYPVADVVLLALLVGVSA 191

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL--GLASG-SMHGPIRNWLPY 455
            +    ER  L V  +       ++V D V      A +   G     +    +  +   
Sbjct: 192 MLGVRRERTLLLVGAAIAA----NLVGDIVYLDLATAGVYVEGGPLDLAWLSAMALFALA 247

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVR-----AADNQFHWM------IIRIRPMSN 504
            H +DRD  +              +  +RV              +               
Sbjct: 248 AHGSDRDTVQAS---AQSGEGAGTRVGWRVLALPLACNLGSLVILAAGYGDRFSSAAAWL 304

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G ++  +        + ++   +   A  D LTG+PNR++ +D    ++  +      
Sbjct: 305 AVGCVVAALARTAITFREVRAFHEVREQARTDELTGLPNRRALMDEARRMVATATARHPA 364

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++ +  D +K++ND LG   GD +L  +  R+ + L+  D LARL G+ F ++L   
Sbjct: 365 ALLLLDL--DGFKEVNDSLGHHAGDSLLRQVGPRLRDALRATDTLARLGGDEFAVLLPD- 421

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +      + A  +R+ +  P  +    + V  SIG A+      T  E+L+ A++AMY A
Sbjct: 422 SALDGAQERAERIRELLLQPFTVEGIRLHVGVSIGVATAPVPAATVQELLRCADVAMYAA 481

Query: 685 KH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALI 742
           K  R G             DR+   E+L  A+E+  +L +   P + L D  +VG EAL+
Sbjct: 482 KSSRAGVRAYVPDPRGGIGDRLHTMEELRTALEDGDQLAVHLQPQVALDDGRVVGAEALV 541

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +S +  +  AE+  +++ +   +LE        W        + + +N+++
Sbjct: 542 RWHHPTRGLLSPAALLPAAEQAGLLRPLADAVLELSLSAAACWWR---DRRVPVSVNLSA 598

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            D+ D +L   +   +++     + + L   E  +M +P+R R++LG LR++G+  ++DD
Sbjct: 599 ADVTDLDLPAKVAGALARHGLPAAALTLELVEDTLMADPDRGRVVLGDLRRLGVRTSIDD 658

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           +GT  S L+YL ++P D +K + SL        +  AI+R  + +A ++  T++A+ +  
Sbjct: 659 YGTGYSSLAYLRHLPADELKLDRSLTRDVGRDPRAAAIVRHTVALAHDLGLTLVAEGVEE 718

Query: 921 EIDIKEL 927
           +     L
Sbjct: 719 DDTGDVL 725


>gi|116694184|ref|YP_728395.1| signal transduction protein [Ralstonia eutropha H16]
 gi|113528683|emb|CAJ95030.1| predicted signal transduction protein containinga membrane domain,
           an EAL and a GGDEF domain [Ralstonia eutropha H16]
          Length = 655

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 199/422 (47%), Gaps = 6/422 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +P+R +F   L   +  +   ++    V++I I  Y+++++V  I   D +       
Sbjct: 233 TTMPDRVAFGRWLDQTIAQARLAESG-CAVLLIHIADYREVDEVFEIRADDILAQDAGAL 291

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
              +L+  D LARL+ + F + +    +  +  +    M  S+A  I     ++ +  +I
Sbjct: 292 AQAVLEPHDFLARLARDEFAVGVPELVHHGRAQELGSRMLGSLAEFIAARGLQMQIGVNI 351

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716
           G A +     TS  +++ A +++  A+  G N V  F  +         +I+ DL LA++
Sbjct: 352 GIAIYPRDAQTSEALMQAARVSLAEARQSGSNQVRLFNSAAGERARRTRVIRRDLWLAIQ 411

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +  L L + P        +VG EAL +W HP  G +S +EF+ +AE+   I  ++ ++L 
Sbjct: 412 DDALSLQFQPKYDARRRTLVGAEALCRWRHPALGQVSPAEFITVAEQSGQIDKLDDWVLT 471

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            + R +  WRD   +P + + IN++          + +   I +    PS I L  +E+ 
Sbjct: 472 SVCRQVRQWRDA-GVPTVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETA 530

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
            M +  +S   L  L+ +GI + LDDFG+  S L YL  +   T+K + +L+ G      
Sbjct: 531 AMKDIGKSLETLAELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDTDAQ 590

Query: 897 --AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             AI+ S++ +A  +   ++A+ +     ++ L  MGCD +Q   ++ PL        L+
Sbjct: 591 GRAIVGSMVALAHELRMKVVAEGVESASQLEILNEMGCDEVQGYLLSLPLDAAGFADALR 650

Query: 955 ER 956
           E+
Sbjct: 651 EQ 652


>gi|293401449|ref|ZP_06645592.1| putative response regulator/GGDEF domain/EAL domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305087|gb|EFE46333.1| putative response regulator/GGDEF domain/EAL domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 780

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 188/436 (43%), Gaps = 10/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +Q++  +     +  D+LT        LDR    +            ++ +DI  +K IN
Sbjct: 343 QQERLEKESEALSQYDHLTD----AWKLDRFKQQVTEDIQVYGEAMALLTLDIKNFKMIN 398

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   G+ +LV++ + + ++++  +  AR++ + F ++L  E+ +  +      + + 
Sbjct: 399 TDYGYTYGNRILVAMAQILRQIMESHESFARMNADIFVVLLHYESQAE-LQQRIEDIIRR 457

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +    +       +   IG        +    M+ +A  A    K    +    F  +  
Sbjct: 458 MERMADTQNLAFPIICMIGVYMIKEKNMPLPSMIDHANSARKKIKMYHKSSYAFFDDADE 517

Query: 701 RSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            S R      +D+  A  N+E  + Y P + +      GLEALI+W       I    F+
Sbjct: 518 ASHRKEHHFIQDIIAAFHNNEFIVYYQPKVHIPTRRCYGLEALIRWKRGN-EIIGPDTFI 576

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  +++F+L++    I +W D   + P+ I +NI+   L D ++   +  + 
Sbjct: 577 SLFEKHGYIDELDMFVLKQACMQINTWIDA-GIEPLSIAVNISGVHLRDPDIVNKIVNVC 635

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  + I+L  +ESV++ + +        L++ G  L++DDFGT  S LS L  +P 
Sbjct: 636 QYFDIPRNLIELEITESVMLEDIDDVMKKAIALKQAGFKLSMDDFGTGFSSLSILKKLPV 695

Query: 879 DTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +         ++   I+ ++I MA+ +   +I++ I     I+ L  +GC+  Q 
Sbjct: 696 DIIKLDREFFQKVMDQREKIIISNVIHMAQQLNINVISEGIETIEHIRFLQEIGCEEAQG 755

Query: 938 SHVASPLGFNSILKLL 953
            + + PL    +  +L
Sbjct: 756 FYFSKPLPMEKLDNIL 771


>gi|269964362|ref|ZP_06178604.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           40B]
 gi|269830859|gb|EEZ85076.1| c-di-GMP phosphodiesterase A-related protein [Vibrio alginolyticus
           40B]
          Length = 786

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 109/462 (23%), Positives = 196/462 (42%), Gaps = 19/462 (4%)

Query: 506 NGDILRYIGIANDITEQKK-SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           N +I R      D+ E+     +     A  D+LT + NR  F +  T  L       + 
Sbjct: 312 NDEIGRLSARFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHELATREL----ISPSQ 367

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT-------RRIGELLKFPDILARLSGNRF 617
              V+ +D+D +K +ND  G  +GD++L   +       +++      P   ARLSG+ F
Sbjct: 368 FLWVVYVDLDNFKYVNDKYGHELGDNLLKVFSSHIKDACQKLSHDYNSPCFAARLSGDEF 427

Query: 618 GIILISENNSLKIADF-AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
            I+L S     ++ D  A  + K I+   +       VTAS+G A +       +++L +
Sbjct: 428 AILLSSNQEVKRLPDLLASELLKPISNLSSSWSNSFPVTASVGIAQYPQDGTDIAKLLSS 487

Query: 677 AELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A+ AMY AK  G N    +    +     R  ++  L  +    E +LV+ P +   + E
Sbjct: 488 ADAAMYQAKRAGKNQYAYYSAALNIESQRRSQLERALRKSNVEEEFHLVFQPYMNNRNNE 547

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I GLE L++W+    G I   EF+ IAE+  +   I+ ++      +    R+      I
Sbjct: 548 IEGLEVLLRWEAEGIGPIPPKEFIPIAEQAGLFDKIDRWVFANATAEYYQLRNIFGK-DI 606

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++S +L   E+   +    +     P  I++  +E+        +   L  L K 
Sbjct: 607 VLSVNLSSAELNSIEMANYIHEQATLHSVKPECIEIEITETFAAEQQGTAL--LDELSKR 664

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTI 913
           G  L +DDFG+  + L+ L   P   +KF+    +T        +++ II +      T+
Sbjct: 665 GYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLVTLMKTNNGHVIKPIIELCHAQNKTV 724

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A+ I   +  + L+   CDY+Q      P+    +    + 
Sbjct: 725 TAEGIEHNMMHEWLSAYRCDYMQGYLFGKPMTKEQLSLWWQS 766


>gi|223982669|ref|ZP_03632901.1| hypothetical protein HOLDEFILI_00175 [Holdemania filiformis DSM
            12042]
 gi|223965368|gb|EEF69648.1| hypothetical protein HOLDEFILI_00175 [Holdemania filiformis DSM
            12042]
          Length = 1550

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 195/431 (45%), Gaps = 22/431 (5%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +++E +   ++ D LTG+ NR  ++++L             +  V+V D++  K++N++ 
Sbjct: 1134 QAVEQLRFMSYHDPLTGLGNRNRYVEQLQKW----QQHPLSQAGVLVCDVNGLKQLNELY 1189

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G   GD VL+ L R +    +  D L RL G+ F  +    + +             +  
Sbjct: 1190 GHHYGDQVLIELARILNLHARP-DQLFRLGGDEFIAVYEEISYAE-----FQQRLARLKN 1243

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
               ++   +++ +S     W+  +   + ++ +A+  MY AK        +         
Sbjct: 1244 AFTIIVNGVSMGSS-----WSGDEPDINALMNHADQLMYIAKQNYYKTTYNLSKHYRPET 1298

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               + E L    + +   +   P   L    I+G EALI++ HP+ G I  + F+ + E 
Sbjct: 1299 YQQVMEAL----KENRFTVYIQPKADLESGRILGGEALIRYLHPQLGVIPPARFVPVLEN 1354

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              +I+ I+LF+L+ + R     + Q+    + + +N +   LL+  +   ++ ++S   +
Sbjct: 1355 EHLIRIIDLFVLDEVCRMQQRRQQQSRD-AVVLSLNFSRLTLLEENMALEVEKILSHYDF 1413

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             PS I++  +E+V     E  R ++  L+++ + ++LDDFGTK + LS L    FD +K 
Sbjct: 1414 DPSLIEIEITETVGEIEKETLRTVIQSLKRLHLRISLDDFGTKYTNLSMLTVADFDVLKL 1473

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL+     + +   I+ SII M + +  ++IA+ +  E     L ++ C   Q     
Sbjct: 1474 DRSLIQELVASPQNQIIVASIISMCRQLGVSVIAEGVETEAQRDMLRQLQCGLGQGYLFG 1533

Query: 942  SPLGFNSILKL 952
             P+       L
Sbjct: 1534 KPMPVGDFRTL 1544



 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 137/322 (42%), Gaps = 28/322 (8%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG---LASGSMHGPIRNWL 453
           ++  ++  ++   A+     ++ + ++  + V        I G              +  
Sbjct: 525 AELAYAKEQQYRKAIAAGACLMIEINLCDNLV------EKISGDWSFLIDEATRTPYDQF 578

Query: 454 PY------IHINDRDNF-----RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                   IH +DR  F     R  L +     R  +  ++R  +   Q  W+      +
Sbjct: 579 QRNVARQQIHPDDRRAFLQTFSREALKAAYNQERREIPLQYRRLSQKRQMVWVETTAHII 638

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +     L+ +    DI ++KK    +   + +D+LTG+ N+ S   ++ ++L+    D 
Sbjct: 639 QDPATQHLKVLFFIRDIDKEKKHELILQYQSQRDSLTGLLNKGSTEAQIQSVLEN---DP 695

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++V+DID++KKIND  G   GD VL  + R+I E+ +  D+L R+ G+ F I++ 
Sbjct: 696 QALHALLVLDIDEFKKINDTFGHLYGDQVLSRIARQIREVFRENDVLGRIGGDEFAILMK 755

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +      + D A  + + +            V+ SIG + +        ++ +NA++A+Y
Sbjct: 756 NCKTEQIVRDKAEQLCQKLTTLFADG-----VSCSIGVSFFAKDGTYFYQLYQNADIALY 810

Query: 683 HAKHRGGNHVESFRVSSFRSDR 704
            +K +G N V+ +  S  +   
Sbjct: 811 QSKRQGKNQVQFYLPSMKQESW 832



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 2/182 (1%)

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF-TVIQHVLATGYFSQGIFSDG 404
                F GL   +  + D+ ++   +     L   +     V+  +         I  + 
Sbjct: 346 AFTAGFPGLQYQLRIQTDSGLLYLLVFASFALTGSVQTLNCVVLDITEGKQREMDIAMNE 405

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R + A+   G +++D+    +++  TP         + +++         I     ++F
Sbjct: 406 QRMTKALDQVGCVLFDYYFKTNQILGTPQACARYDFPAEAVNPEYFIDHGLILSPFGESF 465

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
            T++         R+    + R  D   HW  + +  +++  G   + +GI  DIT QK 
Sbjct: 466 LTMIHRLRQGE-ERVSCIIKNRNHDGIVHWSQLTLVTLADEFGHARQAVGIIEDITLQKD 524

Query: 525 SL 526
           + 
Sbjct: 525 AE 526



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 10/161 (6%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG------SGDIVWDWDIVRDRVTTT 431
           + +L+ F  IQ V  +    +       R+S  +         G  +   D  +  +   
Sbjct: 246 VAVLLYFADIQAVKESQAELEAQLDQLRRRSEEMTMLTDNLPGGICLIQLDDAQTLLYGN 305

Query: 432 PDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
                +L      +    +N L   IH +D+ +    +          LQY+ R++    
Sbjct: 306 RRFYQLLHTTDEEIRQRYQNELGRMIHPDDQASVLKQIKEAFTAGFPGLQYQLRIQTDSG 365

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
             + ++     ++   G +     +  DITE K+    I  
Sbjct: 366 LLYLLVFASFALT---GSVQTLNCVVLDITEGKQREMDIAM 403



 Score = 51.1 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 97/342 (28%), Gaps = 51/342 (14%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
              +  +   LG      +G  RN L  I   ND    +    +         Q   R  
Sbjct: 165 FYISSSLLAQLGFTYEEFYGHCRNQLDLILMPNDVGTIKAQCQAAF-QLGNEFQIPLRFV 223

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D    W   +        G +   +    DI   K+S   +   A  D L     R+ 
Sbjct: 224 RKDRTPLWRQCQGFRFLTDRGRVA-VLLYFADIQAVKESQAELE--AQLDQL-----RRR 275

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
             +       ++   DNL   + +I +D  + +  + G      +L +    I +  +  
Sbjct: 276 SEE-------MTMLTDNLPGGICLIQLDDAQTL--LYGNRRFYQLLHTTDEEIRQRYQNE 326

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             L R+             +    A     ++++       L+ ++ +    G       
Sbjct: 327 --LGRM------------IHPDDQASVLKQIKEAFTAGFPGLQYQLRIQTDSGLLY---- 368

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI-KEDLCLAVENSELYLVYH 725
                 +L  A  A+  +       V        R   + + ++ +  A++     L   
Sbjct: 369 ------LLVFASFALTGSVQTLNCVVLDITEGKQREMDIAMNEQRMTKALDQVGCVLF-- 420

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
                   +I+G              ++   F+    +  +I
Sbjct: 421 -DYYFKTNQILGTPQACARYDFPAEAVNPEYFI----DHGLI 457


>gi|302878831|ref|YP_003847395.1| diguanylate cyclase/phosphodiesterase [Gallionella
           capsiferriformans ES-2]
 gi|302581620|gb|ADL55631.1| diguanylate cyclase/phosphodiesterase [Gallionella
           capsiferriformans ES-2]
          Length = 429

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 112/433 (25%), Positives = 201/433 (46%), Gaps = 19/433 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+  R      L      +AT  +     + ID+D++K+IN+  G   GD+V+  
Sbjct: 4   TDPLTGLLGR---FGCLAAAGRFAATSQSQPYAAIWIDLDRFKRINESFGHPGGDEVIKD 60

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L  R+         +AR+ G+ F  ++   N      +FA  +  +I+  IN+    +  
Sbjct: 61  LAVRLRNRASGRAEIARMGGDEFVFLVPRCN-RTSAENFARELASTISEIINIGNLTLCP 119

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--------RSDRVM 706
           TASIG A   + + + + +L+ A+ AMY AK +GGN +                  + + 
Sbjct: 120 TASIGIAICDTDESSLA-LLERADRAMYAAKDKGGNCIVFSGDEPIPGRLGITLAREEIS 178

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  L  A+E   L L Y PII L + +I  +EAL++       N+   +F+ +AE+  +
Sbjct: 179 IESMLHDALETGGLCLHYQPII-LANGKIEAVEALMRCTV-NGINLPPGKFIPVAEKTGL 236

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  + L + A      +D        + IN++   L+ ++  + + A +  +   P 
Sbjct: 237 IVRLGEWSLLQGALQARQLQDAGYHT--KVAINVSRAQLVSSKFTQALHAALICSNVKPE 294

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I+L  +ES+ M   +  +  L      G+SL++DDFGT  S L+ L  IP   +K + +
Sbjct: 295 LIELELTESLFMDISDTVQNNLKNAIAAGVSLSIDDFGTGYSCLANLKDIPAKKLKLDRA 354

Query: 887 LMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +T   E R A+  +R++  +   +  T++A+    + +I  L   G D IQ    A P+
Sbjct: 355 FVTVLPEDRRALAVVRAMTQLGHELGMTVVAEGCEHQKEIDALFDAGVDAIQGFFYAKPM 414

Query: 945 GFNSILKLLKERF 957
              ++L  L+ R 
Sbjct: 415 PEEALLHWLQNRN 427


>gi|217970062|ref|YP_002355296.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
 gi|217507389|gb|ACK54400.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thauera sp. MZ1T]
          Length = 600

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 109/562 (19%), Positives = 206/562 (36%), Gaps = 37/562 (6%)

Query: 423 IVRDRVTT--TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           I  D V          +LG     + G     L      D   F       +     R +
Sbjct: 48  ITGDEVVLDANSAACRLLGRDYRDVAGRPLADLF----ADGQAFLAARARLLIEGERRGR 103

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK---------------- 524
            +F +   D     +     P       I   I  A  +  + +                
Sbjct: 104 LDFAL--PDGGVRALEFNCAPRLRPG--IHAIILSAPAVVAEYETGTPVLAAPRPTAGGA 159

Query: 525 -----SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
                +    +     D LTG+ NR+    R       +A        ++ +D+D +  +
Sbjct: 160 RAFDDAPSMSMYLTSHDPLTGLANRRMLEARFGDCAVRAAGRHG-SIAIVRLDLDGFAAV 218

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N  LG + GD+VL  + RR+        ++AR   + F ++L    +      FA  + +
Sbjct: 219 NRSLGESAGDEVLRCIARRLAATAGSAALVARERSDSFIVLLPEPAHPGNADQFAETLLR 278

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++A P+ L      +TAS G A +         +L+NA+ A+  A+  GGNH   F    
Sbjct: 279 AVAEPLELGGGLQRITASAGLALYPQDGRNLDTLLRNAKSALEQARRLGGNHCSVFHTRL 338

Query: 700 FRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    ++  L  A++  EL L + P++          EAL++W HP+ G +   +F
Sbjct: 339 DGPGFDSSHLERGLRHALQADELCLHFQPLVDARSGRTRAGEALLRWRHPELGLLPYRQF 398

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           M    +  ++  +  ++L         W    +   + + +N++ + L+  +    +   
Sbjct: 399 MGAVGDPRLLADVGDWVLATACDHATDWPPTHDGECLRLTVNVSVEQLMRGDFAARVATA 458

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +     R++L   E V+  +       L R+   G+ L++DDFG   S +  L   P
Sbjct: 459 LRTSGLKAERLELDLDEKVLALDSPTLAATLERIAATGVRLSIDDFGRGLSSIPRLRRYP 518

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  L+   G +E   AI+ ++  +A  +   I A+ +        L  + C   
Sbjct: 519 LAALKLDPELVRGVGRSEDSEAIVEAVGALAGTLGLEIYARGVEHRGQQAFLCALDCHLQ 578

Query: 936 QDSHVASPLGFNSIL-KLLKER 956
           Q      PL       +LL+ +
Sbjct: 579 QGPLFGRPLAAREFADRLLRAQ 600


>gi|167755810|ref|ZP_02427937.1| hypothetical protein CLORAM_01326 [Clostridium ramosum DSM 1402]
 gi|167704749|gb|EDS19328.1| hypothetical protein CLORAM_01326 [Clostridium ramosum DSM 1402]
          Length = 1765

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 104/517 (20%), Positives = 213/517 (41%), Gaps = 34/517 (6%)

Query: 454 PYIHINDRDNFRTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             IH +D+++F  + +           +   FR    + ++ W+   +  +S        
Sbjct: 139 KIIHPHDQNDFLQLFNKMKNNHGDFKPVMGRFRRLLNNGEYSWINGILIAISKGQFSDTV 198

Query: 512 YIGIAND-----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           Y+ +  D     I  +  + +        D  TG+ N  SF   L     L     N   
Sbjct: 199 YMCLFQDGGLTPINVESTNYKE------YDQTTGLLNEHSF---LKAARFLLEEGGNDNY 249

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISEN 625
            ++ IDI+ +K  ND  G  +G+ +L  +   + ++      +A    G+ F +I+ +E 
Sbjct: 250 CLIAIDIEHFKLFNDWYGRQMGNKILGQIGLELQKIQNEFKTVAGYFGGDDFVVIMPNER 309

Query: 626 NSLK--IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   + D    ++     P    +  I +                + M   A +A+  
Sbjct: 310 PLIDKLLTDLIAHIKVVTVNPGFFPKFGIYIVI---------DGEYVAAMYDRALIALSS 360

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K      +  +  +  +       I  D   A+ N E  + + P   +++ +IVG+EAL
Sbjct: 361 IKENYTKQIAYYDSNIRQDFEYSQSILMDTQQALYNHEFMVYFQPKCNMLNGKIVGVEAL 420

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP  G IS  +F+ I E+   I  ++LF+ +   R + +W DQ     + + +N++
Sbjct: 421 VRWNHPTKGIISPGDFVFILEKNGFIVNLDLFVWQETCRLLSNWLDQ-GNQGVPVSVNVS 479

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D+   ++ +  + L+++     + I++  +ES    + E    ++   R  G ++ +D
Sbjct: 480 RTDIYAIDVVKTFKELVAEYKLPVNLIEIEITESSYASDYEIISKVVDDFRLAGFTVLMD 539

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIA-ILRSIIPMAKNIETTIIAKDI 918
           DFG+  S L+ L  +  D +K +     +   +  R   IL +I+ MAK +   +IA+ +
Sbjct: 540 DFGSGYSSLNMLKDVNVDILKIDMKFLELREDSIGRGIGILEAIVKMAKLMGLRVIAEGV 599

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  I  L  +GC Y Q  +   PL       ++  
Sbjct: 600 ETKQQIDLLNELGCIYGQGYYFYPPLSVQEFEAIISN 636



 Score =  168 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 109/252 (43%), Gaps = 8/252 (3%)

Query: 454  PYIHINDRDNFRTIL--DSFVG--YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              I    +D  + +L  ++ +    +          R  D +++WM              
Sbjct: 1515 KIIQKEYQDKVKEVLGLEAILTRYQQGTTTNSVVYKRYVDGEYYWMEATYHIFDLQENKD 1574

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            +       DI +QK+    +   A  D LTG+ NR   ++ +  IL    +++     ++
Sbjct: 1575 IFCYLYVIDIDKQKRQELALKNKAEHDGLTGLYNRSKAINEINQILL---SNEMTCGALL 1631

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ++D++ +K+IND  G A+GD ++    +R+ E+ +  DIL RL G+ F I+  +  + + 
Sbjct: 1632 MLDMNDFKEINDNYGHAIGDKIITKTAKRLKEMFRNDDILCRLGGDEFMILCRNI-DEIS 1690

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            I      + + + +P  + E +I    SIGF        T + + K A++A+Y AK  G 
Sbjct: 1691 IRMKLEDVTRQMKIPYLIEEYQIMAPLSIGFVMIPLYGTTFNNLYKKADIALYKAKQDGL 1750

Query: 690  NHVESFRVSSFR 701
                 +     +
Sbjct: 1751 ASYRMYHDDMNK 1762



 Score = 55.0 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 50/178 (28%), Gaps = 16/178 (8%)

Query: 353  GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
                     + N +   A  G L+   I+I  T    +                    V 
Sbjct: 1036 INSSTGYMWVTNQLELVAHQGNLIWRGIVINITERVEL-------------KNHLEAVVN 1082

Query: 413  GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
             S   ++           + +++T LG          +     I   D D      ++  
Sbjct: 1083 NSPGDIFMM-TPNHIEFFSSNLSTSLGYCKEEYCQLTKRSYDLIDKRDIDYVNEAFEAAY 1141

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              +R  L   +RV+  +    ++ +      +  G    Y G   +ITE   + +   
Sbjct: 1142 REKR-PLDVIYRVQHKNGSIAYIQMIASYYEDKAGRPYFY-GDFINITEVVNARKNNQ 1197



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 429 TTTPDIATILGLASGSMHGPIR--NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
               ++ ++L L +            +  IH  D       +              +R+ 
Sbjct: 845 FINREMLSLLNLTTMEEFNLFCKGQIINIIHPEDHQTVYAAI-GLEEDEGFEYTVRYRIM 903

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             D  + W+  + R +   +G +L YI    DI E
Sbjct: 904 KKDQTWLWVQEKGRIVKAKDG-LLAYICAIVDINE 937



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +        I  +            + ++H +D++ F ++ D          +   R  
Sbjct: 688 IIKVNDIFYHITKINPADFENIRDRIIEFVHPDDQNEFISLFDQAYQNPISGSEATIRYY 747

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
           +   +  W+ +R+  +   +  ++ Y G  ND+T  K +L+     A
Sbjct: 748 SLKGKVSWISLRVFFLRKQDKSLIFY-GAMNDVT--KNNLQEQELKA 791



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 429  TTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
              +     I+G +   +     N L   IH +DR      L      +   +   +R+ +
Sbjct: 983  YLSESFLNIVGFSQVEIITSYNNQLVQLIHPDDRHKITDKL----TGKSTSINLMYRINS 1038

Query: 488  ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +   + W+  ++  +++    I R  GI  +ITE+ +    + 
Sbjct: 1039 STG-YMWVTNQLELVAHQGNLIWR--GIVINITERVELKNHLE 1078



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-----TPDIATIL 438
              V+  V +     + I+   +     +  +   +W +D    ++          I  IL
Sbjct: 1309 LCVLNDVTSMKQKEEEIWLSSQILDRVIKMANLNIWQYDYQTKQLILMNLERDSFIYQIL 1368

Query: 439  GLASGSMHGPIRNW-----LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
             L                 +  ++   ++  R  L       + +  YE  +   +++  
Sbjct: 1369 DLPRNEDIIIDNYLNKINNIEVMNEQTKEKIREQL--IAQTVQNKFSYELPL-TLNSKII 1425

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            W+ +    + +     L+ +G   D+T +K S +  L NA
Sbjct: 1426 WIKVVGETIYDYGDRPLKLVGYFKDVTLEKSSFQKYLENA 1465


>gi|296450863|ref|ZP_06892613.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296879134|ref|ZP_06903129.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296260334|gb|EFH07179.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296429677|gb|EFH15529.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 450

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 193/425 (45%), Gaps = 18/425 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D +TG  N + F   +T +L    T  N +  +++ DIDK+K IND+ G   G+ +L
Sbjct: 37  AYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLIL 94

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + EL+   +  AR+S + F I+L        I      + K I +   L     
Sbjct: 95  KDIADTLNELININETFARVSADNFNILLTYNKKEDII-----NIIKKIMVNNEL----- 144

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            V  S G        ++ S     A LA    K+    +   F         +   I+++
Sbjct: 145 -VNLSFGIYEIKDKALSVSVYSDRASLAKSSIKNNSDVNFAFFNDELREKLLLEDKIEKE 203

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E+ +  +   P   +   +  G EAL++W + +   I   +F+ + E+   I+ I
Sbjct: 204 MEYALESGQFVMYLQPKYNIKLNKFCGSEALVRWQYTEKEVIYPGDFIPVFEKNRFIRKI 263

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           ++++LE+  ++I S  D+  + P+ I +N +  D L  +    +  +  +       I++
Sbjct: 264 DMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFLKKDFISNIVNVCDRYKIPYGLIEI 322

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS-LMT 889
             +ES + G+ +    +   L+ IG  + +DDFG+  S ++ L  IP + +K +    + 
Sbjct: 323 EITESSMFGDTDILFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVD 382

Query: 890 GST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +K   +++SI+ + K +   ++A+ I  +  I+ L +  CD +Q  + + PL    
Sbjct: 383 DKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETKSQIEMLKKANCDIVQGYYFSKPLPIKE 442

Query: 949 ILKLL 953
             KL+
Sbjct: 443 FEKLV 447


>gi|238059540|ref|ZP_04604249.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237881351|gb|EEP70179.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 582

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 123/490 (25%), Positives = 212/490 (43%), Gaps = 11/490 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R +     +    W+WD+    V  +  +  + GL  G+      ++   +H +D     
Sbjct: 91  RLAHIEQLAKVGTWEWDVATGEVVWSDVLLQMFGLPPGTTL-DYPSYRQLVHPDDIGLIE 149

Query: 466 TILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             LD+ +        Y  R+   D              ++ +G   R +G A+DITE ++
Sbjct: 150 RTLDTALRT-GAPFSYTHRMYLPDRATLRVFECYGEVFTDDSGVPERVLGTAHDITEIRR 208

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +   A +D LT +PNR++    L  + DL A+       +++IDID +K INDV G
Sbjct: 209 AQDELTRLAERDPLTDLPNRRA---LLARLDDLLASGGGRSGALLLIDIDNFKDINDVHG 265

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AVGDDVL  L R +   L    +L RL G+ F ++L        +A        ++  P
Sbjct: 266 HAVGDDVLRVLARLLVRHLPSGTVLGRLGGDEFAVVLPDVTAGEALAVAEGLCDATVRSP 325

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           + L++  + VT SIG AS      T    L +A+LA+Y AK+ G N    +    +R   
Sbjct: 326 VPLVDAGLRVTLSIGAASLEP-GDTRDVALAHADLALYEAKNAGRNRARLYLPEQYRHAV 384

Query: 705 VMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +     +  A++   + L   PII L+  E+V  E LI+    +   +  + F+   E
Sbjct: 385 QRVSVVARVRNALDERRMRLDAQPIIDLLTGEVVSHELLIRLRDGREPELPPAAFLPTVE 444

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  ++ +++             A+       +NI+++ L      + +   +    
Sbjct: 445 RDDLIGELDRWVVAT--ATAALADPAASAAKTRFDVNISARSLESPGFGDWVVGRLRTAG 502

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+ L  +E+  + N    R L G LR  G  L+LDDFG      +YL ++PF TVK
Sbjct: 503 VEARRLGLEVTETAAITNVAAVRNLAGTLRDAGCRLSLDDFGAGFGSFAYLKHLPFSTVK 562

Query: 883 FNGSLMTGST 892
             G  +  + 
Sbjct: 563 IAGDFVRQAD 572


>gi|225571477|ref|ZP_03780473.1| hypothetical protein CLOHYLEM_07575 [Clostridium hylemonae DSM
           15053]
 gi|225159953|gb|EEG72572.1| hypothetical protein CLOHYLEM_07575 [Clostridium hylemonae DSM
           15053]
          Length = 623

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 183/438 (41%), Gaps = 8/438 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +   A +D LTG    + F +     +D    + + R  V+ ID + +K +NDV 
Sbjct: 186 RKTEKLADMAGRDKLTGALTTERFYEEAQKAID---REPDARIAVLYIDFENFKYVNDVF 242

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L      +   L+  ++L+R   +RF ++   E+    + +     R+ + +
Sbjct: 243 GYEVGDAILQKYVEVVKASLRNGELLSRTMADRFVLLRYYEDKQRLLEEQQELDRRFVNL 302

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +   +  ITV            ++    ++  A  A    K R   H   +  S  +  
Sbjct: 303 DVLPDKHSITVACGFCCREDVIEQLDIHGLINRANYAQKTIKSRPDEHYAFYNDSIRQKL 362

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                + + +   ++N E  +   P +   D  I G EALI+W       I+  EF+ + 
Sbjct: 363 FREVYLTDRMQEGLDNREFRVYLQPKVSPYDGMIKGAEALIRWITTDGKFITPGEFVPLF 422

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   IK ++ ++ E + R +  W ++     + + +N++       +  +  + +  + 
Sbjct: 423 EKNHSIKKLDTYVFENVCRLMQEWHEK-GQTVVPVSVNVSKLTFYTADFIKEYREIKERY 481

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +++ F+E+V   N +    ++  L + G   ++DDFGT  S L  L  +  D +
Sbjct: 482 GIPDHMLEIEFTETVACENEKYMTQIVKELHENGFLCSMDDFGTGYSSLGMLKNLDIDIL 541

Query: 882 KFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +      S +  K   I++ ++ M   +    +A+ I  +  +  L   GCD+IQ  +
Sbjct: 542 KLDALFFRESKDLKKEQIIVKEVLHMICQLNIKAVAEGIETDSQVAFLKECGCDFIQGYY 601

Query: 940 VASPLGFNSILKLLKERF 957
              P+        LK ++
Sbjct: 602 YYRPMPAEEFEAELKRQY 619


>gi|188592078|ref|YP_001796676.1| diguanylate cyclase (ggdef) and c-di-gmp phosphodiesterase (eal)
           domains [Cupriavidus taiwanensis LMG 19424]
 gi|170938452|emb|CAP63439.1| putative Diguanylate cyclase (GGDEF) and c-di-GMP phosphodiesterase
           (EAL) domains [Cupriavidus taiwanensis LMG 19424]
          Length = 657

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 196/419 (46%), Gaps = 6/419 (1%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           P+R +F   L   +  +   +     V++I I  Y+++++V  +   D +          
Sbjct: 238 PDRVAFGRWLDQAISQARLAETG-CAVLLIHIADYREVDEVFEVRADDILAQDAGALAQA 296

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           +L+  D LARL+ + F + +    +  +  +    M  S+A  I     ++ +  +IG A
Sbjct: 297 VLEPHDFLARLARDEFAVGVPELVHHGRAQELGSRMLGSLAEFIAARGLQMQIGVNIGIA 356

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
            +     TS ++++ A +++  A+  G N V  F  +         +I+ DL +A+++  
Sbjct: 357 IYPRDAQTSEQLMQAARVSLAEARQSGSNQVRLFNSAAGERARRTRVIRRDLWVAIQDDT 416

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L + P        +VG EAL +W HP  G +S +EF+ +AE+   I  ++ ++L  + 
Sbjct: 417 LSLQFQPKYDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSGQIDKLDDWVLTSVC 476

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R +  WRD   +P + + IN++          + +   I +    PS I L  +E+  M 
Sbjct: 477 RQVRQWRDA-GVPTVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETAAMK 535

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--A 897
           +  +S   L  L+ +GI + LDDFG+  S L YL  +   T+K + +L+ G        A
Sbjct: 536 DIGKSLETLAELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDTDAQGRA 595

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+ S++ +A  +   ++A+ +     +  L  MGCD +Q   ++ PL      + L+ +
Sbjct: 596 IVGSMVALAHELRMKVVAEGVESASQLDILNEMGCDEVQGYLLSLPLDAAGFGEALRAQ 654


>gi|255655856|ref|ZP_05401265.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 459

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 193/425 (45%), Gaps = 18/425 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D +TG  N + F   +T +L    T  N +  +++ DIDK+K IND+ G   G+ +L
Sbjct: 46  AYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLIL 103

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + EL+   +  AR+S + F I+L        I      + K I +   L     
Sbjct: 104 KDIADTLNELININETFARVSADNFNILLTYNKKEDII-----NIIKKIMVNNEL----- 153

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            V  S G        ++ S     A LA    K+    +   F         +   I+++
Sbjct: 154 -VNLSFGIYEIKDKALSVSVYSDRASLAKSSIKNNSDVNFAFFNDELREKLLLEDKIEKE 212

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E+ +  +   P   +   +  G EAL++W + +   I   +F+ + E+   I+ I
Sbjct: 213 MEYALESGQFVMYLQPKYNIKLNKFCGSEALVRWQYTEKEVIYPGDFIPVFEKNRFIRKI 272

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           ++++LE+  ++I S  D+  + P+ I +N +  D L  +    +  +  +       I++
Sbjct: 273 DMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFLKKDFISNIVNVCDRYKIPYGLIEI 331

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS-LMT 889
             +ES + G+ +    +   L+ IG  + +DDFG+  S ++ L  IP + +K +    + 
Sbjct: 332 EITESSMFGDTDILFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVD 391

Query: 890 GST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +K   +++SI+ + K +   ++A+ I  +  I+ L +  CD +Q  + + PL    
Sbjct: 392 DKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETKSQIEMLKKANCDIVQGYYFSKPLPIKE 451

Query: 949 ILKLL 953
             KL+
Sbjct: 452 FEKLV 456


>gi|284054665|ref|ZP_06384875.1| diguanylate cyclase/phosphodiesterase with response regulator,
           putative [Arthrospira platensis str. Paraca]
          Length = 355

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 99/347 (28%), Positives = 176/347 (50%), Gaps = 6/347 (1%)

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV--TASIGFASWTSSKITSSE 672
           + F I++    +  +I+     ++++I  PI L E  +    + SIG A  +     S +
Sbjct: 1   DEFAILIDDIQDLSEISQLTHKIQQTIKKPILLGEENLETVTSLSIGIALSSMGYNCSED 60

Query: 673 MLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ML++A+ A+Y AK RG      F   +      ++ ++ DL  A++  EL L Y PII +
Sbjct: 61  MLRDADTALYRAKERGKGSYAIFTQAMHHQVRQQLQLETDLRYALKRQELILNYQPIISM 120

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               IVG EAL++W+H  +G +S ++F+ IAEE  +I  +  +++E+       W     
Sbjct: 121 TTNRIVGCEALLRWEHKTFGCVSPAKFIPIAEETGLICPLGDWVIEQACIQAKQWESIYQ 180

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P FI +N+A+K L    + E ++ ++  T  SP  IK   +E+ +  + E +   L +
Sbjct: 181 DLPPFISVNLATKQLTQAGIVETIKEILEATKCSPELIKFELTETAIAESTEVAVTTLRK 240

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKN 908
           ++ +GI L +DDFGT  S LS L   P DT+K + S + G    E +  I  +I+ +A++
Sbjct: 241 IKDLGIRLCIDDFGTGHSSLSRLSCFPIDTLKIDRSFIKGINASEHQTKIAYAIVKLAQS 300

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +    IA+ I       +L   GC+  Q   +A P+   +  ++L +
Sbjct: 301 LGMETIAEGIENLEQFCQLKSWGCELAQGFLMAEPIASETFQEVLNQ 347


>gi|163742808|ref|ZP_02150193.1| ammonium transporter [Phaeobacter gallaeciensis 2.10]
 gi|161384063|gb|EDQ08447.1| ammonium transporter [Phaeobacter gallaeciensis 2.10]
          Length = 947

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 151/786 (19%), Positives = 291/786 (37%), Gaps = 64/786 (8%)

Query: 221 TFAMAWVVLGYISIDFGFLSKLVNLPSGELL----IWRACSEIALSSSLIIFLFMYLHWN 276
                   L    + +  +   V  P+G L     I  A + +  S      L   L   
Sbjct: 138 FLGYIATSLTLAGLVYPLVGHWVWNPAGWLRQIGFIDFAGATVVHSVGGWTALIAVLFLG 197

Query: 277 RWHAKV------------GYITFSGIACIAILFCM-----SFYYPMVTASIARITLASIV 319
               +               +   G+                +   V   +AR  L++  
Sbjct: 198 PRLGRYGHKNRFIEENSVSLMALGGMLLWIGWGAFNGGSAMVFNADVAPIVARTMLSAAG 257

Query: 320 LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI-IQPALVGGLVLI 378
              T  ++   + G+ RA LLI   +   +        +T  +   I +  AL    V  
Sbjct: 258 AGVTCIVVGLLVNGHIRAELLINGILGGLVAGTAAIHLVTGPVAFLIGVAGALTVMFVRD 317

Query: 379 VIL------IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           V+       +   V  H+ A    +  +      ++L   GS        I+   V    
Sbjct: 318 VLDALKIDDVVGAVPVHLAAGVVGTLAVAVAVPYEALP-AGSRLGQLGIQILGVGVVAAW 376

Query: 433 DIATILGL-----ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG----YRRGRLQYEF 483
            +AT+  L       G +    R+ +  +++ + +    +LD         R GR     
Sbjct: 377 VMATMAPLLWMLNRRGLLRAKPRDEVRGLNLAENNQRNALLDLLEDMKRHQRSGRFSQRV 436

Query: 484 RVR----------AADNQFHWMIIRIRPMSNSNGDILRYIGIANDI-TEQKKSLEGILCN 532
           RV             +     +   I    ++         IA D      ++ +     
Sbjct: 437 RVEPSTRLGALAYRYNRVLDRVETEIAQRIDALRRERDMRAIAEDAFDAMCEAQKESAWA 496

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTGI NR+   D L                V+ +D+D++K+IND  G A GD VL
Sbjct: 497 ARHDKLTGIGNRKYLEDFLAA----PVQVPGEVTLVIALDLDRFKEINDTYGHAAGDAVL 552

Query: 593 VSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
             + RR+   ++   D   R+ G+ F   +   +   +  +    +  ++  P    E  
Sbjct: 553 QVVARRLSGRMQDGRDFAFRIGGDEFTAFVQVSDGGAEAEELCQDLAFTLLEPFYYQEVR 612

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKE 709
           +    S+GFA            L+ A+LA+Y AK  G ++V ++  +     SD++ +  
Sbjct: 613 LRFGVSVGFAVMDP-GEPLKSTLRRADLALYEAKSSGSDNVVAYSDAIGQAHSDKMNLIR 671

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D   A+E +E+  ++ P I      ++G E L +W HP  G ++   F+ IAEE+     
Sbjct: 672 DFREALERNEITALFQPQIEAKTGRLIGCEVLARWQHPHRGLLTPDLFLPIAEEMNCSAD 731

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++L +L+   +       Q    P  I +N+++  L D +L   + +   +       + 
Sbjct: 732 LDLAVLDLALQGYWELHRQGIELPG-ISVNVSAARLADPQLVAELHS---RDDIPRGALT 787

Query: 830 LSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               E+V + +  +     +  L+ +GIS+ +DDFGT  + ++ +  +  D +K +    
Sbjct: 788 FELLETVFLDSISDDYAQKIAMLKDLGISIEIDDFGTGHASIAGVLALQPDRLKIDRVFA 847

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +       R  ++R +I MA ++    + + +    + + LT +G D +Q   +  P+ F
Sbjct: 848 SEIDRKPARQDLMRGLIEMAASVGAETVVEGVETWEEARVLTTLGADVLQGYVIGRPMAF 907

Query: 947 NSILKL 952
             +L+ 
Sbjct: 908 EDLLRW 913


>gi|254425433|ref|ZP_05039151.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
 gi|196192922|gb|EDX87886.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
          Length = 552

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 109/453 (24%), Positives = 210/453 (46%), Gaps = 41/453 (9%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR + L     +LD+      +   ++ I ID +K ++D  G  V D++L  +
Sbjct: 106 DALTGLTNRTALLSAGNRLLDV---RPEVSVALLSIGIDHFKTVSDAFGFRVADELLRQV 162

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            +RI   L   D+LAR   N F ++L    +  +    A  +  SI     +  + + V 
Sbjct: 163 GQRIQTYLGSRDVLARTGDNEFSLLLSP-GDEARSRQIADQILASIHQTFRVQSQLVHVQ 221

Query: 656 ASIGFAS--------------WTSSKITSSEMLKNAELAMYHAKHRGGNHVE---SFRVS 698
             +G A               +  S    SE+L  A +AM      GG+         + 
Sbjct: 222 GRLGIAFAEAMRTSSREQRQAFDRSVFDCSELLLQANIAMTEGTPLGGDTQYAVFCPEMK 281

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  +++V +++ +  A+E  +L + Y  I+ +     VG EAL++W HP  G +   +F+
Sbjct: 282 AAIANKVGLQQSMSAAIEQQQLRVRYQAIVDIKTGRTVGFEALVRWQHPVRGLMRPDDFL 341

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE L +   I+ ++L+++   ++ W+ +  +P   + +NI+   L  ++L E +  L+
Sbjct: 342 PVAEGLGLTFKIDRWVLKKVCEQLVKWQAEGLLPS--VSVNISGSHLCRSDLVEYIHELL 399

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P ++ +  +ESVV+ +  R+   L +LR +GI ++LDDFGT  S L+YL   P 
Sbjct: 400 AYYPVDPRQLNVEVTESVVVADLSRAIRTLLQLRSMGIGISLDDFGTGYSSLTYLQQFPV 459

Query: 879 DTVKFNGSLMTGSTE------------------KRIAILRSIIPMAKNIETTIIAKDIYG 920
           D +K + S ++   +                  +   I+ SI+ +A ++   ++ + I  
Sbjct: 460 DVLKIDRSFVSRLGQSTEDGSREYKQLAVASSRQDELIVTSILTLASSLGICVVVEGIER 519

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               + L +  C Y+Q ++ +S +       LL
Sbjct: 520 LDQWQFLQKTCCGYVQGNYFSSAIEAERARSLL 552


>gi|293393856|ref|ZP_06638163.1| YhjK like protein [Serratia odorifera DSM 4582]
 gi|291423683|gb|EFE96905.1| YhjK like protein [Serratia odorifera DSM 4582]
          Length = 656

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 200/432 (46%), Gaps = 10/432 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   + ++++TG+PN+      L   +  S   +  R  ++VI I+   + + VL
Sbjct: 223 RAHADMSRLSTRNSITGLPNQVLLTALLEQHIASSLRPE--RFNLLVIGIETLHEASGVL 280

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             A  + ++  LT ++ + L    +LA+L+   F ++             A  +   I  
Sbjct: 281 TPAQRETLVRKLTEKLHQCLDKDSVLAQLTNAEFAVLAKGIERPFHAMQLAQRIMAQINA 340

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+++ +  +  TASIG A +     ++ ++L++A  AM  A   G NH+  F  S     
Sbjct: 341 PLDIQKMSLRPTASIGIAHYLDRGESAEQLLRSAMSAMMSAHRDGKNHILFFEPSLTDRT 400

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + ++   +E  +  L   P + +    ++G EAL++W          ++ + +A
Sbjct: 401 QKRLTQESEILQGIERDQFTLYLQPQMDMRTNAVIGAEALLRWRQYDGSITLPADVIPLA 460

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EEL +I  +  ++LE   R +  W+ +     + + +N+++  + D +    ++ ++ + 
Sbjct: 461 EELGVIVPLGNWVLEASCRILADWQARG--IALPLAVNVSALQMQDADFVPQLKLMLQRY 518

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
              P ++ L  +E+V + + + +  LL  L ++G+S+ LDDFG   S L+YL     +P 
Sbjct: 519 AIDPRKLLLEITETVRIHDLDHALALLRELHELGLSIALDDFGMGYSSLNYLNRLKGLPI 578

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K + S + G      A++R +  +++ +   ++A+ +        L + G  + Q  
Sbjct: 579 DLIKIDKSFIHGL-PGDEAMVRIVSAISEVLNLPVMAEGVETAAQRDWLLQHGMYHGQGF 637

Query: 939 HVASPLGFNSIL 950
             + PL   +  
Sbjct: 638 LFSHPLPREAFE 649


>gi|303327934|ref|ZP_07358373.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861760|gb|EFL84695.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Desulfovibrio sp. 3_1_syn3]
          Length = 963

 Score =  354 bits (909), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 93/443 (20%), Positives = 185/443 (41%), Gaps = 13/443 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    I    ++D LTG+ N   F      +L            ++  DI ++K IND  
Sbjct: 527 RHSAQIQSLLYRDRLTGLDNLDKFYTECGRLL----GGTEHEYALLYGDISQFKIINDNF 582

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G AVGD++L +    + + +   +  AR+S + F ++L         A      +     
Sbjct: 583 GFAVGDELLRAYAAILRDSVGQDERCARVSADHFILMLRYHGWEQLAARTKDMAQSLDVW 642

Query: 644 PINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSF 700
                     +    G     +++      ML  A  A  +AK   RG   +   ++   
Sbjct: 643 RYAW-GMPYKIGTVFGVYLVNAAEKHNIHLMLDLANYARRNAKLTMRGPLVLYDEKMRQD 701

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  +   L  A+E  EL   + P + +   EI G EAL++W+HP  G +    FM +
Sbjct: 702 ALLQQELSGHLENALEQGELTAWFQPKVDMPSGEINGSEALVRWNHPARGLLMPGSFMPL 761

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E    +  I++++ E++ + +  W  Q       +  N +S      +  + +  + ++
Sbjct: 762 FERNGAVVQIDIYVFEQVCKALKQWSKQGLPIH-RVSCNFSSLHFDRADFPQQLADIAAR 820

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                + +++  +ES +M NPE +   + +L++ G  + +DDFG+  S L  +  I  D 
Sbjct: 821 YEVPHALLEVEITESSIMRNPESACAQIMQLKERGFLIAIDDFGSGYSSLGQIQQIMADV 880

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +       +   +L ++I MA  +  ++I + +      + L ++GC   Q  
Sbjct: 881 LKLDRSFVQRNILGTREQIVLSNVIRMATELGMSVICEGVETGEQAEILIQLGCRNAQGF 940

Query: 939 HVASPLGFNSILKLLKE--RFPL 959
             A P+      +LL++  R P+
Sbjct: 941 FYAKPMPGRDFEQLLQKGARLPV 963


>gi|293402532|ref|ZP_06646667.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304046|gb|EFE45300.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 752

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 96/438 (21%), Positives = 189/438 (43%), Gaps = 13/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  + I   A+ D +T    +  F   L   LD +   D +  T + +D+ K+K IN   
Sbjct: 315 KKNKEITNIAYIDPITQGFTQVRFEKEL---LDRAK--DFVPYTFISLDLRKFKLINASF 369

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  +   I + L   + + R++ + F I L +  +  KI +   ++   I  
Sbjct: 370 GSENGDKVLRHVYVCIKKHLAKDEFVTRVNADNFNIYLHTI-DEGKIKERLHSIADEINK 428

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                +    +  S G             +   A +A    K+    ++ +    +    
Sbjct: 429 YNQERQLPYYIPLSCGCYIVKDDAQELIVVRDKANIARKTNKNIPNYYLSNIVFYNDLEH 488

Query: 704 RV-----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           ++      ++  +  A++  E  +   P + L   +I+G EAL++WD P+ G I   +F+
Sbjct: 489 QMLLKEKEMENMMEKALDEEEFIIYLQPKVSLKTGKIIGSEALVRWDSPEKGLIPPDDFI 548

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E+   I  +++++ E + + +  W D+  +    I +N++   L      E  + + 
Sbjct: 549 PFFEKNDFIIKLDMYVFEVVCKILRKWIDEGKIVH-PISVNLSRNHLHHPNFLEEYRKIQ 607

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       I++  +E+VV  N E  + ++  + K G   ++DDFG+  S L+ L  IP 
Sbjct: 608 QKYEIPDQYIEIELTETVVFENLEMLKTIIDEIHKYGYKCSMDDFGSGYSSLNVLKEIPV 667

Query: 879 DTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           D +K +    +   +KR   I+ ++I +AK +    IA+ I     ++ L  M CD IQ 
Sbjct: 668 DILKLDRVFFSSENDKRGEDIVETVISLAKKLGMETIAEGIETIPQVELLKSMECDAIQG 727

Query: 938 SHVASPLGFNSILKLLKE 955
              + P+  +    L+++
Sbjct: 728 YVFSKPVPVDQFETLVQD 745


>gi|251771343|gb|EES51924.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 700

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 101/447 (22%), Positives = 190/447 (42%), Gaps = 20/447 (4%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            IL  +G    I    K  + I   A +D LTG+ N++ F + L   +  S    +   +
Sbjct: 262 SILNVVGSVKAI---YKYTKDIEYYAVRDPLTGLFNQRVFWELLGYEIGRSERHGSPPFS 318

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++V+D+D +K+IND  G   GD  L      +GE  +  DI+AR  G+ F +IL  E   
Sbjct: 319 LVVLDVDDFKRINDTFGHTFGDSFLQGFATLLGEFARGEDIVARYGGDEFVVILP-EAGP 377

Query: 628 LKIADFAIAMRKSIAMPINLLEREITV---TASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +   F   + + +     L   E ++   + S G A+W     ++ ++   A+  MY A
Sbjct: 378 EQAVSFVRRLLERLRG-FGLESPEGSIAKTSVSAGIATWPHHGTSARDLFLVADNMMYRA 436

Query: 685 KHRGGNHVESFRVSSFRSDRVMIK---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           K +G N V                     L  AV    +   + PI+R  D  +   E L
Sbjct: 437 KAQGKNTVCLPTEEDVAEVFREASGKYVLLQQAVAERSVVPYFQPIVRAEDGSVAAYEVL 496

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++    +   + + +F+ IAEE  +I  ++L ++E   R               + +NI+
Sbjct: 497 MRLVV-EGRALPAGDFVEIAEESGIISRLDLIVMEEAFRMAAERGFGGL-----LFVNIS 550

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + ++  +     + L+ ++  SP ++ +  +E   + N     + +  L++ G    +D
Sbjct: 551 PRAVVAGDFLPSFRRLLRESGISPRQVVVEITERETVRNASLLEIFVSELKRDGTRFAID 610

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DFG+  S ++YL     D +K  G  +      +    AI+ +I+ +A+      +A+ +
Sbjct: 611 DFGSGFSSMTYLKRFSVDFLKIEGDFVRSLPDPESLDRAIVAAIVTLAREAGIRTVAESV 670

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLG 945
                ++ +   G DY Q   V  PL 
Sbjct: 671 ESPEILELVRSFGIDYAQGFTVGRPLP 697


>gi|46201467|ref|ZP_00054986.2| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 550

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 105/556 (18%), Positives = 222/556 (39%), Gaps = 20/556 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATIL---GLASGSMHGPIRNWLPYIHIN---DRDN 463
           A+      +   +     V             G A+    G  RN+      +   +   
Sbjct: 3   ALDALDAHICVMEPEGLIVFVNAAWKRFAEANGYAADGQAGMGRNYRQICASSGTSESIT 62

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++D     +       +    +  +  W  + +  +   +      +    +++  K
Sbjct: 63  IARMIDQVASGQSAEQTIVYPC-HSSQERRWFKLHLSRIPGHD----LVVAAHANVSAIK 117

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              +  L  A  D  TG+ +R+        +    +  D   P + V+ ++   ++    
Sbjct: 118 IEADLELEAALCDEATGVLSRRGMTRFAAQL----SRFDTAPPLLAVVSLEDLPRLATQC 173

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  + ++ L  L  R+  L      ++ + G    I+L   + S +   +A  + + ++ 
Sbjct: 174 GRRLANEFLHHLAARLKSLSPAEGAISHIGGRDLAILLPVSSLSGQPLPWARTLTEELSK 233

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRS 702
           P  L  R +    S G A  + +     ++L  A+LA+  A+  +    +    ++    
Sbjct: 234 PAMLHSRLLRTKVSCGMAIGSETAWDFDDLLDRADLALGEARVGQSPIALYDSDMARRAQ 293

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  ++ +L   +   +L L Y P +      + G+EAL++W HP+ G +  SEF+ IAE
Sbjct: 294 RRNKVEAELHHTIARKQLSLAYQPQVDGKSGRLTGVEALLRWHHPELGLVPPSEFIPIAE 353

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++  +  ++LE   R I+ W+D   M  + + +NI+  DL  ++    +   ++   
Sbjct: 354 ASGLVSDLGQWVLETACRQIVHWQD-IGMKTVPVAVNISGCDLHVSDFGANVARTVAGFG 412

Query: 823 YSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +P+ I+L  +ESV++ +    +   + RL   G    +DDFGT  S ++YL Y+P   +
Sbjct: 413 LNPASIELELTESVLISDIGSEAGRSIDRLVAAGFRFAIDDFGTGYSNMAYLRYLPLRKL 472

Query: 882 KFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +  AI  +I+ +A+ +    +A+ +      + L  +GC  +Q   
Sbjct: 473 KIDRSFIQDIGVVHEADAITSAIVRVAEALSIKTLAEGVESMEQHRALMSLGCREMQGFL 532

Query: 940 VASPLGFNSILKLLKE 955
              P    SI   L  
Sbjct: 533 FGKPCPPGSIAHRLAA 548


>gi|319936761|ref|ZP_08011174.1| hypothetical protein HMPREF9488_02008 [Coprobacillus sp. 29_1]
 gi|319808318|gb|EFW04883.1| hypothetical protein HMPREF9488_02008 [Coprobacillus sp. 29_1]
          Length = 753

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 184/435 (42%), Gaps = 14/435 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLD-RLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           K   + I   AF D +T       F   RL   +D          + + +D+ K+K IND
Sbjct: 314 KNKNQEIYNIAFVDPIT-----LGFTQPRLKIEIDELMNHFEP-FSFITLDLKKFKLIND 367

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G+ VL  +   I + L   + ++R++ + F II  +  +  +I++    +   I
Sbjct: 368 SFGSYEGNRVLNHVYHCIKKNLNDKESVSRINADNFDIIFKTI-DKEEISERLTKIATDI 426

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
                  E    +    G    T    T   +   A  A    K  G     +       
Sbjct: 427 NEFNKEREIPYFIPIICGTYIVTQKDDTMITIHDRANAARKKNKQNGQLLCNNLFYEELE 486

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I+  +  A+EN E  +   P + L   +++G EAL++W HP  G I  ++F
Sbjct: 487 RLNMIKEKEIENSMEKALENHEFEVYLQPKVCLKTGKVIGAEALVRWIHPTKGMIYPNDF 546

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + EE   I  ++ ++ E + + +  W D+   P   I +N++   L      +    +
Sbjct: 547 IPLFEENGFILKLDQYVFEEVCKLLRRWIDEE-KPLRRISVNLSRNHLNKQGFLKEYSVI 605

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K    P  +++  +E++V  N    + ++  +  +G   ++DDFG+  S L+ L  +P
Sbjct: 606 QKKYNVPPELLEIELTETIVFENLSLLKDIIDDIHNMGFLCSMDDFGSGYSSLNVLKEVP 665

Query: 878 FDTVKFNG-SLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K +    +  +T++   +++S+I +AK ++   +A+ I     ++ L +M CD IQ
Sbjct: 666 VDILKLDRIFFVNEATKRSNDVVQSVIELAKKLDMETVAEGIETIPQVESLQKMQCDIIQ 725

Query: 937 DSHVASPLGFNSILK 951
               A P+  +   +
Sbjct: 726 GYVFAKPMPISEFEE 740


>gi|89095202|ref|ZP_01168126.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanospirillum sp. MED92]
 gi|89080560|gb|EAR59808.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanospirillum sp. MED92]
          Length = 863

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 190/450 (42%), Gaps = 16/450 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I    K  + +   A +D LT + N++ F + L   LD S      +  +
Sbjct: 419 LLNVVGSVRAI---YKYTKDLEYYATRDPLTSLYNQRMFWELLDYELDRSDRH-GYKTAL 474

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D +K IND  G + GD +L      + + L    I+AR  G+ F I++   + + 
Sbjct: 475 LLLDLDNFKSINDGYGHSWGDKLLADFADYLQKSLGKEAIIARYGGDEFVIVVPEADAAE 534

Query: 629 KIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             A   + +       +       + +T S+G   +        ++    +  MY AK  
Sbjct: 535 ASAIAELVLTTIRNHSLYYDSNTNLKLTGSLGMGIYPDHAKNKKDLFMFVDNLMYRAKSL 594

Query: 688 GGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G + +     +        + +    +  A+EN EL   + PI+   D  I  +E L + 
Sbjct: 595 GKDQIALPDENELVDIFKEMSDKTVLVTQAIENRELIPAFQPIVSSGDGSIHAVEVLSRI 654

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    +S++EF+ IAE +  +  ++  ++++  + +             + IN++ + 
Sbjct: 655 QLPDNKLMSANEFIEIAESIGKVHLLDYIVMDKAFQQVKE-----TGYDGKVFINLSPRS 709

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           ++ ++    ++ L      +P  +    +E   + N       +  L+  G  L +DDFG
Sbjct: 710 IVISDFIPTIRKLAEDHQIAPETVVFEITERDTVKNIAVLESFVLNLKDQGFQLAIDDFG 769

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S   YL ++P D VK  G  +       + +A + SI  +++ ++   +A+ +  E 
Sbjct: 770 SGFSSFHYLKHLPIDYVKIEGEFIANMANDARDMAFVNSISQLSQELQVETVAEFVESEE 829

Query: 923 DIKELTRMGCDYIQDSHVASP-LGFNSILK 951
            +K +   G  + Q  H+  P L    +++
Sbjct: 830 VMKLVAEAGITFSQGYHIGKPTLQLAEVIQ 859


>gi|114777016|ref|ZP_01452036.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
 gi|114552537|gb|EAU54997.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Mariprofundus ferrooxydans PV-1]
          Length = 551

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 193/434 (44%), Gaps = 5/434 (1%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K ++ I   A  D  TG+PNR S ++ L+TIL L A        +M +  D    I  
Sbjct: 115 LRKRMDEIRYLANNDRDTGLPNRSSTIEYLSTILALPAQ-QKSDYVLMKVSCDNLMDIEV 173

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G    D V+  +  R+   L     L+R   + F  ++    +  ++A  A  + +S 
Sbjct: 174 AFGFEASDSVVAQMHERLNSALPPATFLSRTHRSEFAALIKGM-SQGEVAALANGVNESF 232

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
               +  +  + V +SIG+   +        +L+ AE+A+  A+++  + V     S   
Sbjct: 233 KCAFSHRDIPLHVESSIGYLHLSERSEDPDRVLQMAEVALMRARNQHHHVVAYDHASHKV 292

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             D + +  +L  AV   +L L Y P + L D  +VG EAL++W+HP+ G I   +F+  
Sbjct: 293 SRDNLALLGELRNAVGADQLRLHYQPKLLLADNSLVGAEALMRWEHPERGMIPPDQFIPQ 352

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  + ++ L         W     M  + + +NI+  DL+     + +   + +
Sbjct: 353 AEKSSIINELTVWALRSAVTQQSQWCAMRGMEQLKVAVNISVHDLMVPGFHDVVLQTLEQ 412

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L  +ES +M +   S  +L RL    + +++DDFGT  S L YL  +P   
Sbjct: 413 GNLDNGNLELEVTESALMEDIATSVDVLKRLSGANVIISIDDFGTGYSSLKYLDLLPTAA 472

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +           I+++ I +A ++   +IA+ +  E +   L  MGCD  Q  
Sbjct: 473 IKIDQSFVFRMARDAGSRQIVQAAIGLAHSLGMRVIAEGVETEENYSMLRDMGCDIAQGF 532

Query: 939 HVASPLGFNSILKL 952
            ++ PL        
Sbjct: 533 FISRPLASEKFPGF 546


>gi|300115266|ref|YP_003761841.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii
           C-113]
 gi|299541203|gb|ADJ29520.1| diguanylate cyclase/phosphodiesterase [Nitrosococcus watsonii
           C-113]
          Length = 433

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 190/424 (44%), Gaps = 14/424 (3%)

Query: 541 IPN-----RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           +PN     R + L RL   L            ++ I + ++++IN   G   GD +L   
Sbjct: 3   LPNLPQPQRDTVLARLRHHLQSPHPQ---LLGLLTIKLCRFREINTTFGYQAGDSLLAQF 59

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITV 654
              I E ++  D L R+    F +IL S +   +    A  +       P  +       
Sbjct: 60  AEHIREHIRPQDELVRVGDAEFSLILPSLHTGGQALLAANRVWALAQQYPFTVNGHTPLP 119

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-RSDRVMIKEDLCL 713
             ++G A     +     +L+ A+LA+  A+  G  +            D ++++E+L  
Sbjct: 120 HVAMGIALCPEHEKEPESLLRAADLALAEAQKTGNPYHIYHSRLLEVARDDLVLEEELEH 179

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+EN E  L + P I     +I+G EALI+W HP  G I   +F+ + E+  +I+ + L+
Sbjct: 180 ALENDEFRLFFQPKIAFSTNQIMGTEALIRWQHPTQGMIPPGKFIPLIEKTALIEPVTLW 239

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L    R    W  +    P+ + +N     L++ E+ E ++  +         + L  +
Sbjct: 240 VLNTALRYCAEWAKKGA--PLSVAVNFPPTLLINPEIVELVRQALQIWGTRQGGLILEVT 297

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES VM +P+RS   L  L  +G+ L +DDFGT  S L+YL  +P + +K + S +     
Sbjct: 298 ESAVMTDPKRSLETLQHLSNLGVKLAIDDFGTGYSSLAYLKNMPVNELKIDKSFVDEMAA 357

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +    I++++  +  N +  + A+ I  +  ++ L  +GCDY Q   +  P+   ++  
Sbjct: 358 NQNDSLIVQAVTDLGHNFDLQVTAEGIEDQATLEGLRDIGCDYGQGYFLGRPMAPQNLEN 417

Query: 952 LLKE 955
            ++E
Sbjct: 418 WMQE 421


>gi|225418722|ref|ZP_03761911.1| hypothetical protein CLOSTASPAR_05946 [Clostridium asparagiforme
           DSM 15981]
 gi|225041748|gb|EEG51994.1| hypothetical protein CLOSTASPAR_05946 [Clostridium asparagiforme
           DSM 15981]
          Length = 765

 Score =  354 bits (908), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 187/439 (42%), Gaps = 16/439 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KK    +   A++D LTG  NR  F+  L  +L        +   ++++++  +K +N+
Sbjct: 329 LKKEHVTLQVLAYKDVLTGADNRNRFVTELPALLQAP-----VDYALVLMNVSGFKFVNE 383

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G+++L+ +   +   +   +   R + +RFG+++  +     +      +   I
Sbjct: 384 FFGFERGNELLIHIAGVLNGNIGEGERFYRDNADRFGMLIHFDG-REALTGRIRKIHSEI 442

Query: 642 AMPINLLEREITVTASIGFASWTSSKIT-----SSEMLKNAELAMYHAKHRGGNHVESFR 696
              +    +E  +  + G     +++ T         +  A LA+        N +  + 
Sbjct: 443 NRYVAAPNQEYRINCNFGIHVMRAAERTGQCPSPDVAINGALLALNSVNGNTSNPIAFYD 502

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      +V I   +  A+ N E ++   P   L D+ +   EAL++W          
Sbjct: 503 EAIHEKARKKVEIASQMHAALANREFHMYLQPKFYLNDKNLHSAEALVRWYGADGTIHYP 562

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ + EE   I  ++++MLE   + +  W  +       I +N +     D    +  
Sbjct: 563 DEFIPVFEENGFITELDMYMLEEACKKVADWIRKGYDVR-PISVNQSRIFFYDETYLDKF 621

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +    PS I L  +ESV M N  + ++++ +L  +G S+++DDFG+  S L+ L 
Sbjct: 622 HQIVDRYRIDPSMIILEVTESVAMSNLTQVKMVIDKLHTMGFSISMDDFGSGYSSLNTLK 681

Query: 875 YIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +    +K +   ++  +  R    I+ S+I +A+ +  T +A+ I  +  ++ L  + C
Sbjct: 682 DLDIAELKLDKEFLSEQSTSRRGRMIIESVIHLARALSITTVAEGIEDQDQLEFLESIHC 741

Query: 933 DYIQDSHVASPLGFNSILK 951
           D  Q  + A P+      +
Sbjct: 742 DIGQGYYFAKPMPVEEFER 760


>gi|332993364|gb|AEF03419.1| putative signal transduction protein [Alteromonas sp. SN2]
          Length = 764

 Score =  354 bits (908), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 96/438 (21%), Positives = 196/438 (44%), Gaps = 19/438 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   + I   A  D LTG+ NR                 +N    V+ I I  ++  ND+
Sbjct: 336 QHREKHIRYQAQHDVLTGLFNRNYVEGYFD-----GKMSENENLQVVAITIIGFRTTNDL 390

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G + GD+ L +L  R+          ARL+G     I  +  +  ++      ++  + 
Sbjct: 391 YGYSNGDNTLKALATRLLRWP---GTSARLAGGEILYITDTALDENQLET----LKHILE 443

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFR 701
            P+      I V  ++   S       S E+ +   +    A H           + +  
Sbjct: 444 QPVESNLISIPVKVAMAVVSCPQDATNSEELFRKVNIVTDEAIHSNAWCVHYRPELEAKY 503

Query: 702 SDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             R+ I  +L  A+ ++  EL +VY P I L   ++  +EALI+W++   G +   EF+ 
Sbjct: 504 VRRLTITTELKRALASNQSELSMVYQPKIDLSTMKVCSMEALIRWNNETLGFVPPDEFIT 563

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I+ +  ++++R   D+  +R +       + +N++++D+ +  L + + ++++
Sbjct: 564 IAEQAGLIEQVTTWVMQRTIADLSYFRQKGYG--FTVAMNLSTQDIQNKPLLDKLVSILT 621

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               SP  ++L  +ES ++ +   +   L  L   G    +DDFGT  S L+YL  +P D
Sbjct: 622 DAALSPDALELEITESDLVADASLAIENLNALTSRGFHFAIDDFGTGYSSLAYLKNLPVD 681

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           T+K + S +      +    I+ +++ +A   +  ++A+ +  E+ +  L   GCD  Q 
Sbjct: 682 TIKIDKSFILSLATDDNDKQIVHTVLGLATAFDLKVVAEGVEDEMSLNILKEWGCDIAQG 741

Query: 938 SHVASPLGFNSILKLLKE 955
             ++ PL  +++ + L+ 
Sbjct: 742 YFISRPLAKDALEEWLEN 759


>gi|73539420|ref|YP_299787.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
 gi|72122757|gb|AAZ64943.1| diguanylate cyclase/phosphodiesterase [Ralstonia eutropha JMP134]
          Length = 660

 Score =  354 bits (908), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 197/422 (46%), Gaps = 6/422 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +P+R +F   L   +  +   ++    V++I +  ++++++V  +   D +       
Sbjct: 231 TAMPDRVAFGRWLDQAIAQARLAES-SCAVLLIHVADFREVDEVFEVRADDILAQDAGAL 289

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
               L+  D LARL+ + F + +    +  +  +    +  S+A  +     ++ +  +I
Sbjct: 290 AQAALEPHDFLARLARDEFAVGVPEMVHHGRAQELGSRVLGSLAEFVASRGLQMQIGVNI 349

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716
           G A +     TS  +++ A +++  A+  G N V  F  +         +I+ DL  A++
Sbjct: 350 GIAIYPRDAQTSESLMQAARVSLTEARESGSNQVRLFNSAAGERARRTRVIRRDLWTAIQ 409

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +  L L + P        +VG EAL +W HP  G +S +EF+ +AE+   I  ++ +++ 
Sbjct: 410 DDALSLQFQPKFDARRRTVVGAEALCRWRHPALGQVSPAEFIAVAEQSSQIDKLDDWVIA 469

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            + R +  W+D    P + + IN++          + +   I +    PS I L  +E+ 
Sbjct: 470 SVCRHVRQWQDAGL-PLVPVAINVSGLRFASRNFPQYLLEQIHQHDIPPSAITLEITETA 528

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
            M +  +S   L  L+ +GI + LDDFG+  S L YL  +   T+K + +L+ G      
Sbjct: 529 AMKDIAKSLETLAELQSLGIQVALDDFGSGYSSLGYLKRLRVGTLKIDRTLIGGLDADAQ 588

Query: 897 --AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             AI+ S++ +A  +   ++A+ +     ++ L  MGCD +Q   ++ PL      + L+
Sbjct: 589 GRAIVGSMVALAHELRMKVVAEGVESTSQLEILNEMGCDEVQGYLLSLPLDAAGFAEALE 648

Query: 955 ER 956
           ++
Sbjct: 649 QK 650


>gi|150020644|ref|YP_001305998.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermosipho melanesiensis BI429]
 gi|149793165|gb|ABR30613.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermosipho melanesiensis BI429]
          Length = 819

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 220/553 (39%), Gaps = 33/553 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            S       D V         +        + GL        + N    +    +   + 
Sbjct: 295 FSTLFKNIPDGVAIITPKGKIIDCNKQFTKLFGLK------RLENLETIVPPLLKQESKL 348

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           ++   +       +   R R+ D +  ++ I+       +   +    I  DI+++K   
Sbjct: 349 LILEVLKNGYATYE-TIR-RSKDGKEIYVKIKAIKFEIDDK--VFIYTIYTDISKEKTLS 404

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +     +D LT   N+     ++  +       +    +++ +DI  +K IN + G  
Sbjct: 405 EQLTKLIEKDPLTNTYNKTYITKQIKYL------SNIFFHSLIFVDIKDFKWINSIKGYK 458

Query: 587 VGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIA 642
            G+++L ++  ++ + +       I++R   + F I++   + +S K       + + I 
Sbjct: 459 YGNELLRNIAAKLMDFVSEEKIDAIISRAQNDEFWILIKDIDIDSQKAYQKNKKLIEKIK 518

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             ++  E++  + + +       +     E+++   LA+  +K      V S  +     
Sbjct: 519 QKLSTFEQKFYIGSHLF-----KNSEDLEEIIRKTTLALSKSKDVEMEIVYSKEMEEQVI 573

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             V  +  +  A++N +      PI    + EIVG E L++W+  +   I  S+F+   E
Sbjct: 574 KEVTKEIQIKQAIKNRDFIPFLQPI-SKENMEIVGAEMLLRWE-KEGKIIPPSDFLDYIE 631

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  I+L + E+    +    +       FI +NI+   L D    +    +I K  
Sbjct: 632 RSGQIHEISLQVFEKTMEFLKKHPNLK-----FIDVNISPIQLKDKNFFDEYLKIIEKFN 686

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SP +I    +E++ +   E+ +  + +++K GI L LDDFGT  S LSYL  +PFD +K
Sbjct: 687 ISPKKIAFEITENLFLSYDEQVKENISKIKKEGIKLCLDDFGTGYSSLSYLRNLPFDMLK 746

Query: 883 FNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +   +     E+   +L++I  + +    T I + +     ++ L+ +G    Q  +  
Sbjct: 747 IDREFIKNIDNERNTNLLKAIYSICETFNLTPIPEGVETVKQLEILSMIGFKLFQGYYFG 806

Query: 942 SPLGFNSILKLLK 954
            P+      K++ 
Sbjct: 807 KPMSLEEFEKIVS 819


>gi|288870063|ref|ZP_06112773.2| putative diguanylate cyclase/phosphodiesterase [Clostridium
           hathewayi DSM 13479]
 gi|288868631|gb|EFD00930.1| putative diguanylate cyclase/phosphodiesterase [Clostridium
           hathewayi DSM 13479]
          Length = 618

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 182/439 (41%), Gaps = 11/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K + E +     +D LTG      F   +  +++    + + +  V+ ID + +K +N
Sbjct: 181 QLKVTNEKLEELTSRDELTGAYRADKFYSEVNRMME---REPDAKFAVLYIDFENFKYVN 237

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DV G + GDD+L    + +   LK  ++LAR   +RF ++   E     +    +   + 
Sbjct: 238 DVFGYSYGDDLLKGYAQLVMSRLKEEELLARDVADRFVLLRRYETQEELLETQKMMDEEF 297

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSE--MLKNAELAMYHAKHRGGNHVESFRVS 698
           +   I +L R + +T + G               M+  A  A    K++ G H   +   
Sbjct: 298 LNSDIVMLNRHM-LTIACGICCAEDLVEEPEAVKMVNRANFAQKEVKNKPGKHYAFYGEE 356

Query: 699 SFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +     +   + +   ++N E  +   P + + D  + G EAL++W  P  G +S   
Sbjct: 357 IRQKLIAEMAVKDRMQEGLDNEEFVVYLQPKVGVEDGAVKGAEALVRWAIPGNGLLSPGL 416

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E+   I  ++ ++ E++   +   R       + I +N++     + +       
Sbjct: 417 FIPVLEKNHFIGKVDRYVFEKVCIWLHD-RMANGKTVVPISVNVSKIQFYNPDFIPVYAG 475

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +  +       +++  +ES    + E    ++  L   G   +LDDFGT  S L  L  +
Sbjct: 476 IKKQYGIPDGMLEIELTESAAFEHEEYLMQVVRELHDNGFLCSLDDFGTGYSSLGLLKDL 535

Query: 877 PFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K +G     S +      IL+ II M K +  + +A+ +  E  ++ L   GCD 
Sbjct: 536 PIDVMKLDGVFFRVSVDVNRGHTILKYIIDMVKELNISTVAEGVEREEQVEFLKSAGCDL 595

Query: 935 IQDSHVASPLGFNSILKLL 953
           IQ      P+      ++L
Sbjct: 596 IQGFAFYRPMPVEQFEEVL 614


>gi|258627668|ref|ZP_05722442.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580039|gb|EEW05014.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 546

 Score =  353 bits (907), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 195/392 (49%), Gaps = 10/392 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K ++    ++  D LT + NR++F  +L  I      +   +  ++ +D+D +K+IND L
Sbjct: 158 KQIKRYRRDSLTDFLTSLGNRKAFQIQLHQI---QKQNQASQYALIQVDLDDFKQINDSL 214

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF-AIAMRKSIA 642
           G   GD +L +L RR+  L      + RLS + F ++L SE+   +  +     +  ++ 
Sbjct: 215 GHQQGDKLLEALGRRLKTLQNQERKIYRLSSDEFALVLHSEDKLHQAIELTIEQLSNTLN 274

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
               L +R  +VT SIG A    +        +NA++A+  AK  G N V  F       
Sbjct: 275 QEFRLGKRTYSVTISIGVALLEDALNDVDIWCRNADIAIIKAKSCGKNCVRWFDDELLGE 334

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  I+ +L +A+E+S+L + Y P + L   +IVG+EAL++W HP+ G I+  +F+ I
Sbjct: 335 TIRQFQIERELNIALEHSQLLMHYQPKVDLRTGQIVGVEALVRWQHPELGMINPGDFIEI 394

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I  I  +++    R +  W        + + +N+++   L +++   + + +  
Sbjct: 395 AEKTQQIIPIGRWVIYEACRQLNEWHSTYPF--LSMSVNVSNIQFLYDDIYSVIYSALET 452

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  ++L  +E+ +M  P        RLR++GI + LDDFG   S L+YL  +P D 
Sbjct: 453 YPLPPHVLQLEITETTLMRYPNSVIQTCQRLRELGIQIALDDFGVAYSSLNYLKQLPIDV 512

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIE 910
           +K + S +     ++    I+R+II +  N+ 
Sbjct: 513 IKIDRSFVDSCVDSQVGKMIIRTIIQLGHNLG 544


>gi|114568821|ref|YP_755501.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
 gi|114339283|gb|ABI64563.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
          Length = 713

 Score =  353 bits (907), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 198/437 (45%), Gaps = 12/437 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + +  +  A  DNL+G+PNR  F    T     +A        V+ ID++ +K +ND  G
Sbjct: 282 NEKRAIIAAGTDNLSGLPNRHGFTS-FTESTAATAAAARGEAAVIYIDLNGFKAVNDKAG 340

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GDDV+  +  R    +     +AR+ G+ F   LI E+ ++   D A  +   +A P
Sbjct: 341 HRAGDDVIRRVAHRFRGAVDADIHIARIGGDEFACALIGEDRTIAALDIARHLSDCLAKP 400

Query: 645 INLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
            ++  R   + A+IG A          S+++ +A+LAMY AK    +    F  S     
Sbjct: 401 FDIDGRLFEIGAAIGIAHSDSGHPKPFSQLIHDADLAMYRAKADQLDKPLIFNASLGLEA 460

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  ++ D+   ++  E ++VY PI R  D     +EAL++W+HP  G +    F+ +A
Sbjct: 461 DARRALEADIEAGLDRDEFFVVYQPIARASDGSTASVEALLRWEHPTRGAVPPDVFIPVA 520

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I+ +  F++  +  +I             + IN++   L D  LCE     I   
Sbjct: 521 ENSKLIRRLGDFVVRSVCEEI------GAGASHTVSINLSPAQLNDARLCEHYLREIHAH 574

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +   I+   +E+V++ + E+++  L  L   G  + LDDFGT  + + YL  +PF  +
Sbjct: 575 GMTAEAIEFELTEAVLIDDFEQAKARLVELHDAGFKVNLDDFGTGFASVGYLHMLPFSKI 634

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +      E    +L+++  +   +   ++A+ +  E     L  +G +Y+Q  H
Sbjct: 635 KIDKTFVQTIGRGEGANKMLQALALLGDALSLDMVAEGVETEGQAAMLRLLGFEYLQGWH 694

Query: 940 VASPLGFNSILKLLKER 956
              PL  + +    +  
Sbjct: 695 FGHPLPASQLKTRKRNH 711


>gi|220903699|ref|YP_002479011.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867998|gb|ACL48333.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 574

 Score =  353 bits (907), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 181/426 (42%), Gaps = 12/426 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ N  SF       +      D     ++  DI ++K IND  G   GD +L   
Sbjct: 141 DALTGLHNLHSFK---NECIAHLRQKDGHSHAIVQFDISRFKLINDKFGFTEGDSLLCVC 197

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +   L   +  AR   ++F   L  + +   + +   ++  +I            + 
Sbjct: 198 GEALHSALADTEFCARSFADQFTAFLRYD-DLHSLKERIYSIINTIEQWRAGSGMPTRIE 256

Query: 656 ASIGFASWTSSKITSSEM---LKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710
              G         T  ++   +  A  A+  +K RG + +  +  S  ++      +K+ 
Sbjct: 257 LRCGVYILDRHSHTLDDIQQAMDLAGYALQESKKRGKSKMVLYDESMRKTSLLHQDLKDS 316

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E  EL + + P + ++   ++G EAL +W HP  G +   +FM + E    +  +
Sbjct: 317 ITTALEREELKVWFQPKVNMLSNSVIGSEALARWYHPVHGLLLPGKFMPLFEHSGDVLRV 376

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++ E++ + I  W     M    +  N +S+     E C  +  + S+       +++
Sbjct: 377 DFYIFEQVCKTIHQWERDGIMAS-TVSCNFSSQHFERPEFCRRLVEIASRHSVPHELLEV 435

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-T 889
             +ES ++ NP+ + + + RLR +G   T+DDFG+  S L  L     D +KF+ S +  
Sbjct: 436 EITESTMLQNPDAANIQIKRLRDLGFRTTIDDFGSGYSSLGLLQLFAADVIKFDRSFVKR 495

Query: 890 GSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               KR  I+  S+I + + +  + I + +  +     L + GC   Q  + A P+  + 
Sbjct: 496 NIAGKRAQIVLGSMIELTRQLGMSAICEGVETKEQASILMQHGCYNAQGFYYARPMPADQ 555

Query: 949 ILKLLK 954
             KLL+
Sbjct: 556 FKKLLR 561


>gi|251771296|gb|EES51877.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 861

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 103/437 (23%), Positives = 213/437 (48%), Gaps = 8/437 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K+    +   A  D LTG+PNR+SF+++L   +D  A   +    ++++D+D++K +N
Sbjct: 282 KRKEIERSLTTLANSDTLTGLPNRKSFMEQLQRSIDTGARSGD-SFCLLILDLDRFKAVN 340

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD ++  +  R+  L++  D +ARL G+ F IIL     +  ++ F   +   
Sbjct: 341 DTYGHAAGDTLIREVAGRLRRLMRRADFVARLGGDEFAIILSHTGRTGSLSRFIEKLVLR 400

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           ++ P ++    ++  AS+G A +     ++  ++ +A+ AMY AK  G      +  +  
Sbjct: 401 LSPPYSIGRHSVSSEASVGAAVFPFDGDSAEALVSHADRAMYRAKSSGTRRYAFYDPAMD 460

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           + +    +   ++  A+      L + P++ L+  E+V  EAL++W+HP+ G +S   F+
Sbjct: 461 KEEFARAEAIREISRALAEDAFQLCFQPVVNLLSGELVYAEALVRWNHPEKGYLSPHSFL 520

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +         ++ ++L+     I  W+ + +  P+ I IN+ +  L      + +   +
Sbjct: 521 PLIAGTGTTNDLDHWVLDAAIAQISRWQTEGH--PVPISINLDATTLALPSFPDEVSHCL 578

Query: 819 SKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                  P  I++   E +  GN  R R  L  L  +GI  +LDDFG   + L  L  +P
Sbjct: 579 RAHPELPPDLIRIEVREWIETGNLPRIRHTLELLNNMGILTSLDDFGRGPTTLPSLTALP 638

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + +++      ++ +A++  +  +A+++   ++AK +        L ++GCD  
Sbjct: 639 LEGLKIDQNVILDFQKGDRNMALIEGVASLARSLGHKVVAKGLEKTKYGLLLEKLGCDLA 698

Query: 936 QDSHVASPLGFNSILKL 952
           Q   ++SPL  +  L  
Sbjct: 699 QGFGISSPLPPDEFLAW 715


>gi|296272384|ref|YP_003655015.1| PAS/PAC sensor-containg diguanylate cyclase/phosphodiesterase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096558|gb|ADG92508.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arcobacter nitrofigilis DSM 7299]
          Length = 720

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 112/555 (20%), Positives = 220/555 (39%), Gaps = 36/555 (6%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              ++ +    E    A+  S  IV   +              I G     + G   N +
Sbjct: 193 SDLTEALLH-LEGYKKALDESS-IVSKTNTKGIITYVNNKFCEISGYEEKELLGKNHNII 250

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                 +   F   +   +  +    +     +  D   +++   I P+ +SN +I  YI
Sbjct: 251 RN--PANSKEFFKKMWGTLENKN-IFRGVISNKKKDGSIYYVNSTIIPVLDSNNEIKEYI 307

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI ND+T   +  E I    F DN+TG+PNRQ  ++    +L          P + +I+I
Sbjct: 308 GIRNDVTSLFEKDEIITKQ-FTDNVTGLPNRQKLVEDSKNLL---------FPKLAMINI 357

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           + ++ IND  GI VGD VL   + ++  L      + R+SG+ FGI+      +  +   
Sbjct: 358 NYFRDINDTYGIDVGDFVLKEFSNKLSTLSDLNINIYRISGDLFGILAFGNYTTESLKIL 417

Query: 634 AIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-- 690
            +     +   PI      + ++ SIG +           +L  AE+A+  AK       
Sbjct: 418 CLDFLDEVKINPIKYDGHALNLSFSIGIS------SGREWLLVEAEMALQQAKAENKVLV 471

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                + +     +V +   +  A++N  L +    II  +  E    E L++       
Sbjct: 472 MNLENKNNDALKKKVELTNKIKYALKNDNLLIYGQKIINNITGE-TKYEVLMRLKVDD-K 529

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+  A++  +   +   M++          +          IN+  +D+ + E 
Sbjct: 530 ILSPYFFLEHAKKARLYHEMTRKMIKLACEYFKDKENSF-------SINLTIQDITNEET 582

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E +  ++ +T  +  RI L   ES  +   E+    + +++ +G  + +DDFGT  S  
Sbjct: 583 VEYLTNVLLETKTN-KRIILEIVESEQINQFEKVTSFIKKMKHLGARIAIDDFGTGYSNF 641

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            Y+  +  D +K +GSL+    + +     + +I+  AK +   I+A+ +  +  ++ + 
Sbjct: 642 EYIIKLNVDILKIDGSLIRNIHKDKNIFIAVSTIVNFAKQLGLEIVAEFVDSQEVLETIK 701

Query: 929 RMGCDYIQDSHVASP 943
            +  D  Q   +  P
Sbjct: 702 SLNIDCAQGYFLHEP 716


>gi|257789966|ref|YP_003180572.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
 gi|257473863|gb|ACV54183.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eggerthella lenta DSM 2243]
          Length = 1435

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 102/428 (23%), Positives = 181/428 (42%), Gaps = 16/428 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+  R++F   ++T +            +M +DI+ +K  N+  G   GD  L  
Sbjct: 114 FDALTGLYTREAFFSAVSTAI---QAYPERSYCLMAVDIEHFKLFNEWYGEEAGDLFLEE 170

Query: 595 LTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + R +GE       +   LSG+ F ++L  +            +R  I        + + 
Sbjct: 171 VGRLLGEAAAESGGVSGYLSGDDFCMLLPCD------EGMIETLRARITQSALHHGKGMG 224

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDL 711
              + G        +    M   A LA+   K         +         D   +  ++
Sbjct: 225 FLPAFGLFRIDDRSLPVGIMYDRALLALASVKGNYAQRFRWYDDGMLREIKDDHSLLLEV 284

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E  E+     P   L   +IVGLEAL++W HP+ G I   +F+ + E   +I A++
Sbjct: 285 QQALEKGEITFYAQPKCNLDTGKIVGLEALVRWMHPERGLIPPIQFIPMLERNGLITALD 344

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E + R + +W D     P+ I +N++ +DL   ++    + LI K    P  + + 
Sbjct: 345 LHIWEEVFRALRAWVDA-GQAPVPISVNVSRRDLYALDVLGTFEGLIEKYDIPPRLLAVE 403

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + + E    ++     +GIS+ +DDFG+  S L  L  +  D +K +  L+   
Sbjct: 404 ITESAYVEDCELIVDIVEGFHDLGISVHMDDFGSGYSSLGMLKDVNVDVLKLDMKLLDAI 463

Query: 892 TEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             +     +IL +II MA  ++  +IA+ +  E   + L +MGC Y Q      P+    
Sbjct: 464 DAQSRKARSILEAIIGMANLLDIRVIAEGVETESQRQLLVKMGCLYGQGYFFYKPMPKAE 523

Query: 949 ILKLLKER 956
              L+  R
Sbjct: 524 FEPLIANR 531



 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 124/359 (34%), Gaps = 44/359 (12%)

Query: 382  IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD--IATIL- 438
            +   ++  V +     Q ++    +    +  +G   WDWDI  +R+  +    +  I  
Sbjct: 1081 MALCLVTDVSSMKNQQQELWLTKRKLEGVLDQAGVQSWDWDINSNRLVLSRSELMDRIFA 1140

Query: 439  -------------GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFR 484
                         G    +M         ++  + +  FR         R R R  +E  
Sbjct: 1141 GLSRFEDDMLVVDGFDPETME------FRFVPPDYQQAFRDSFRGVRTARDRQRSVFEIP 1194

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI--------------- 529
                     W+ +    + +     +R +G   D+T+++                     
Sbjct: 1195 FTFEGEAPLWIEVSCETVRDEQDRPVRAVGYYLDMTDRRNESLQNKANSEALRQLRKKSF 1254

Query: 530  --LCNAFQDNLTGIPNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              L  A  D LTG+ NRQ+ + ++   L    +    +    ++++D+D +K  NDV G 
Sbjct: 1255 QLLKMAKTDALTGLHNRQAAIPKIEERLRAVEAGELGDASCALIMLDLDSFKLANDVFGH 1314

Query: 586  AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            A GD V+V +   + E     D++ R+ G+ F +     +        A A+R      +
Sbjct: 1315 AYGDQVIVHVAEALKESF-PGDVVCRMGGDEFLVWCEDVDEGALEDRIASALRAMEVERV 1373

Query: 646  NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                R    +AS G+        +  ++ + A+ A++  K  G      F         
Sbjct: 1374 E-DGRTFLFSASAGYVLVPQEGFSFDDLYQKADSALFSVKMDGKRSCSRFWSGMKTVRC 1431



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 399 GIFSDGERQSLAVLG--SGDIVWD--WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL- 453
            +  +  R +LA+    S   +     +           +  +LG  +        +W  
Sbjct: 705 ALGEENRRTALALSAELSPGGMIGGYCEPEFPLYFANAAMVELLGYDTYEELAAGIDWRV 764

Query: 454 -PYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
              IH +D  +    LD    Y  G      +R+   D  + W + + R +   +G +  
Sbjct: 765 GNTIHPDDLASV--ALDIGPEYYVGLEYTTTYRMARKDGTWFWTLDKGRVVEAEDGRLA- 821

Query: 512 YIGIANDITEQKKSLEG 528
            +    DITE     + 
Sbjct: 822 IVSACTDITEVMAVQQQ 838



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           D +  +     + G     +     + ++  +H +DRD+    + +      G    E+R
Sbjct: 874 DFLYMSDRFLDMFGYTREEIKELFDDKYMLMVHPDDRDSVAKGVTALREGTAGSDPLEYR 933

Query: 485 VRAADNQFHWMIIRIRPMSNSN 506
           +RA D  + W+I + R +   +
Sbjct: 934 MRAKDG-WRWVIDQSRFLEYDD 954



 Score = 43.4 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 41/147 (27%), Gaps = 4/147 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASG 443
                        +            +     +++D +D   + ++       + G+ + 
Sbjct: 541 ADSIERFRIRDLIESRVLSDAMLDDIL--GPLVLYDLYDGEVELLSANEHYCQLNGVNAV 598

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +H     +      +D D      +              R    D     +++ +  + 
Sbjct: 599 DLHELRSTFARRAFESDWDEVMEAFEQARENVPNGAVVVVRRMRPDGSTAHLLVHLLFLR 658

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
              G  L Y+G   D+T +++    + 
Sbjct: 659 EHEGHYL-YLGSLRDVTRERQQARQLE 684


>gi|304394545|ref|ZP_07376464.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Ahrensia
           sp. R2A130]
 gi|303293206|gb|EFL87587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Ahrensia
           sp. R2A130]
          Length = 713

 Score =  353 bits (906), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 200/446 (44%), Gaps = 11/446 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             +   +KS   +   +  D LT + NRQ   D +  +   +  D   +  ++ ID+D++
Sbjct: 248 RSVDRIRKSKAALQHASRHDALTELGNRQFLRDVVKML--EATKDPKSQ-AIVSIDLDRF 304

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G A GD++L+   +R  ++L+  D   RL G+ F ++L  +            
Sbjct: 305 KAVNDTYGHAKGDELLIGFAKRAHDVLRTGDRAFRLGGDEFVLLLAVDECERDALKVCAR 364

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +  S+            VTAS G   W +   +  E L  A++A+Y +K  G N V  F 
Sbjct: 365 VANSLEELCRTDPAFNRVTASFGVTLWPA-GQSFHEALVEADIALYESKGSGRNRVTMFE 423

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG-NIS 753
             +    ++R   +  + LA+  +     + P I +    ++GLE L +         ++
Sbjct: 424 DWMKEAVNERNNTEAMIELALAENRFEPHFQPQIDMRTGRMIGLEVLARLRAQDGETVLT 483

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ +AE    I  + + ++E+      +WR Q  +    + +N ++  +LD      
Sbjct: 484 PNHFLEVAERTGQIIPLGMQIIEKAVHHAATWRVQGAVLS-SLSVNASAAQILDEGFLPS 542

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           ++ L+  T Y    + +   E V++   +      +  LR +G+ + LDDFG   + ++ 
Sbjct: 543 LKELLEVTGYPVELLTIEVLECVMLDGTDTGIVQAVKDLRDLGVRIELDDFGMGHTSIAN 602

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +    +K + S + G+ +      +L+++I MA+ +   ++A+ I  E+  K L  M
Sbjct: 603 VTSLGVHRIKIDRSFIAGAMDDDGMRHVLKAMIAMAQAMNIGVLAEGIETELQQKLLLGM 662

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           GC Y Q  H A P+  +++   L + 
Sbjct: 663 GCVYGQGYHFARPMAADALDDWLGKH 688


>gi|154483754|ref|ZP_02026202.1| hypothetical protein EUBVEN_01458 [Eubacterium ventriosum ATCC
           27560]
 gi|149735245|gb|EDM51131.1| hypothetical protein EUBVEN_01458 [Eubacterium ventriosum ATCC
           27560]
          Length = 826

 Score =  353 bits (906), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 94/441 (21%), Positives = 200/441 (45%), Gaps = 24/441 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E +      D LTG+ N   F +++   L +S  +      +M I+I++ K +ND+ 
Sbjct: 401 KENEILRRKVEIDKLTGLYNIDIFYEKVAERLRISDEE----FYIMNININRLKVVNDIY 456

Query: 584 GIAVGDDVLVSLTRRIG-----ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           GI  GD+++  +  R+      +      +LAR+S + F  +L  E            + 
Sbjct: 457 GIEEGDELIKHVADRLKMFRDSQTDGDNILLARMSDDNFFALLTKEQ---------YDLI 507

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRV 697
           K+  + ++    +I +T   G        +  + M   A++A    K       + S + 
Sbjct: 508 KTFDL-VDDYHLKINITVRTGLYLVDDRTLPINVMCDRAQIATDTVKEGMKKVGIYSRQQ 566

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I  D+  A++  ++ +   P   ++ ++IVG E+L++W HPK+G I S +F
Sbjct: 567 GDQLIFEQNILNDINGAMKQGQIVIYVQPKYDVVHKKIVGGESLVRWLHPKFGMIPSFKF 626

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+   I  ++ ++ E+  + +   +D+     + I +N++  +     L   +  L
Sbjct: 627 ITVLEKNNYITRLDYYVWEKTCQLLRYLKDKNGSV-LPISVNVSRVNFYTTNLVSNLLEL 685

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  ++L  +E+V     +    ++  L++ G  + +DDFG+  S L+ L   P
Sbjct: 686 VEKYNLEPKDLQLEITETVYTEEKQVIYSIISELQEAGFKILMDDFGSGYSSLNMLKDAP 745

Query: 878 FDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            D +K + + M       E+   I+ SI+ ++K +  +++ + +  E  +  L  +G + 
Sbjct: 746 IDVLKLDMAFMRNLDNENERNNIIVESIVELSKKLNISVVVEGVESEKQVNFLKSIGAEV 805

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ  + + P+  +   KL++E
Sbjct: 806 IQGYYFSKPIPTDEYEKLIEE 826


>gi|260903023|ref|ZP_05911418.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308108322|gb|EFO45862.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 907

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 225/569 (39%), Gaps = 29/569 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           T      +    E+       S   +    I R+ V        +L      +       
Sbjct: 346 TSMTQLQLKDSMEKFGALYHSSSLGMLIV-IEREIVDANHRALELLSYKKSDLLEQP--- 401

Query: 453 LPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           L  +     D      +       R    Q+E ++  +  +    +I    +   NG   
Sbjct: 402 LDTLCPTTADECRVDAMYRELQHGRN---QFEAQMLDSHGETIDCLIEATLIQ-HNGHTA 457

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  D++E K+  E I      D ++G  NR   L  L  ++           + + 
Sbjct: 458 LML-LLQDLSENKQQAEMIQKLTDFDPVSGFCNRPVILGALEELVK----HQPNHFSFIY 512

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           I     K+I +V G  + D+ +  ++  + + +     + R+S + F +IL + +     
Sbjct: 513 ITSKSLKQIAEVYGHLIFDEAIQYISTLLRDHMGTH-QIGRISEHEFIVILPNASGHSDA 571

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A  +   ++  I L    +++ +         +  +   +L    +A Y A+   G 
Sbjct: 572 LEAANRLLNQLSYKIELSGIMLSLDSKAVMVDPKITHQSLEHLLL---VARYSAQSMSGR 628

Query: 691 HVESF-----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           H+         +S      ++I  DL +A+    +   + PI+     EI+G EAL +W 
Sbjct: 629 HMHEVLVADGELSEQAETSMIIHRDLEVAIRQDNIIPYFQPIVNAKSGEIIGFEALARWP 688

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIFILINIAS 802
           HP  G IS   F+ +AE+  +I  +   +L +    I      R    +PP+ + +N+++
Sbjct: 689 HPTLGIISPLIFIPLAEQGKLIVELGESILNQSCDFIGKLNTKRHSQGLPPLTVHVNLSA 748

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    + L   +Q++I +   S   + L  +ES++MG    S   +  ++++G+ L LDD
Sbjct: 749 QHFYHSRLISFLQSMIEEHNISAGHLVLEITESMLMGGETESIHCINEIKQLGVQLALDD 808

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  +  S +   P D VK + S +        A  ++R+I  M++ +  TI+A+ +  
Sbjct: 809 FGTGYASFSSVCNFPLDIVKLDKSYVDEIETNDRAKTLVRNIANMSQELGLTIVAEGVET 868

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +++L     D +Q  +   P+     
Sbjct: 869 ASQVRKLKVWNIDELQGFYFYKPMTREDA 897


>gi|109899678|ref|YP_662933.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109701959|gb|ABG41879.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 666

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 107/428 (25%), Positives = 195/428 (45%), Gaps = 13/428 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K   E +   A  D LT + NR++F   L  I+D    D  L   +  ID+D +K IND 
Sbjct: 241 KHLTETLFHQASHDPLTELQNRRAFERNLHEIMD----DRRLSYFLCFIDLDYFKTINDT 296

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD++LV + R +   ++  DI+ARL G+ F I++        +            
Sbjct: 297 CGHAAGDEILVKVARILKANVRSNDIVARLGGDEFSILIKDCPFDNALQIANNIKENIRG 356

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           +  +       ++ASIG A       T++E+L +A++A   AK+ G N V  + VS+   
Sbjct: 357 LTYHWEGETFHLSASIGVAP-KVHGSTTTELLNSADVACGIAKNAGRNTVHLYDVSNETG 415

Query: 703 DRVMIK----EDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEF 757
                       +  A++N    L    II     ++    E L++   P    IS + F
Sbjct: 416 VNKRQDILSVHQINNALKNDLFVLYRQDIIPLQHTQQDQHFEVLLRMKGPDDTIISPARF 475

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
             IAE   +   I+ +++  +       + Q +     I IN++   + D EL + +   
Sbjct: 476 FPIAERYRLTSKIDRWVINALFTHYADNKKQLDSIH-TISINLSGHSMNDRELEQFIMTK 534

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +   L   ++I    +E+V + N +R+RL +  ++ +G S  LDDFG+  +  +Y+  +P
Sbjct: 535 VKSGLIPATKICFEITETVAITNVKRARLFMDNIKALGCSFALDDFGSGHTSYTYVRELP 594

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K +GS ++           ++SI  +AK  +  +IA+ +  +  ++ L ++G DY 
Sbjct: 595 TEKIKIDGSFVSCMMENPLDYTAVKSICDIAKAAKQDVIAECVEDKKTMEALKKLGVDYG 654

Query: 936 QDSHVASP 943
           Q  +   P
Sbjct: 655 QGYYFCHP 662


>gi|153010670|ref|YP_001371884.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
 gi|151562558|gb|ABS16055.1| diguanylate cyclase/phosphodiesterase [Ochrobactrum anthropi ATCC
           49188]
          Length = 656

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 196/439 (44%), Gaps = 14/439 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+  + +   + +D LTG+ NR+     +           +    VM+ID+D +K +N
Sbjct: 216 EAKQLADEMALKSQEDPLTGLFNRRGLETSI-----RLYPVKDGPFIVMLIDLDGFKSVN 270

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  VGDD+LV++ +RI ++     +LAR+ G+ F +     +  ++    A  +  S
Sbjct: 271 DTYGHKVGDDLLVAIAQRIRQVSPERSVLARIGGDEFVLAYPEPSAKIEAGLVAARIIGS 330

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +          + + A +G        +   EML  A+ A+Y AK RG N    F     
Sbjct: 331 LTAHYE-GILSVEIGACVGICRLER--LDPVEMLLRADFALYAAKKRGRNEYYFFEKRLQ 387

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I+ DL +A+E  ++   + P+++L    +VG EAL++WDHP+ G I   E +
Sbjct: 388 HEWERKQSIERDLRIAIETGQVQTYFQPVVQLSSGRMVGFEALLRWDHPQHGTIPPPEII 447

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A E+ +++ +   +L      I    +      + + +N++ ++L    +   + + +
Sbjct: 448 DVACEVGVVRQLTNNVLFNCCEMIDKLTE-GGRSDLTVAMNLSPRELAGGRIPHEILSQM 506

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K     S +++  +E     +       LG L   G+S+ LDDFGT  +  + L     
Sbjct: 507 EKRELPMSMLEIEITEEAPF-DQRGMSDSLGVLSSAGVSIALDDFGTGFATFASLKKGLI 565

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +   + G   +E    I+R+++ +   +   + A+ I  E D   L ++GC+  Q
Sbjct: 566 TKIKIDKVFVRGIAESEGDQHIVRAMVELGDALGIKVTAEGIETEEDRDMLCKLGCNAGQ 625

Query: 937 DSHVASPLGFNSILKLLKE 955
               +  L  +  L  L +
Sbjct: 626 GFLFSPALPASMALDALAK 644


>gi|119774143|ref|YP_926883.1| cyclic nucleotide phosphodiesterase [Shewanella amazonensis SB2B]
 gi|119766643|gb|ABL99213.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 494

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 217/432 (50%), Gaps = 18/432 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR  F   +T  +           T+++ID+ +++ +ND+ G A GD +L   
Sbjct: 77  DKLTGLPNRVGFKRAITHSM------PLTSGTLVLIDLYRFRYVNDLFGFAFGDTLLQLF 130

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  + K P  +AR++G+ F +   +  +   + +    +++ +  P ++ +  ++V 
Sbjct: 131 ADRLRLMPKKPRQMARMNGDEFLLYFDTCLDEKGLLE----IKQLLQQPFSIQDTPVSVR 186

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCL 713
             +G+          S+ML+ A+LA+  A     + + +++     S R  +     L  
Sbjct: 187 LQMGYVQLAQHHADVSQMLRRADLALKRA-RSDKDMLAAYQQDDDISQRRELFIINSLPK 245

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+ +++LYLVY P   L       +EALI+W+HP  G IS +EF+ +AE   MI  ++ +
Sbjct: 246 ALAHNQLYLVYQPKESLHHGGCEQVEALIRWEHPDLGLISPAEFIPLAEYAGMIDLVSAW 305

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            LE++    + WR +     I + +N++ +D+ +  L   +QA +++       + L  +
Sbjct: 306 ALEQVLMQQVRWRAEGIH--IRVAVNLSVEDMQEGNLPTMVQAALARYQLPGEVLALEIT 363

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES +M N  R+   + +LR++G+ + +DDFGT  S L+YL  +P D VK + + + G  E
Sbjct: 364 ESTLMSNLARATENIVKLREMGVKVAIDDFGTGHSSLAYLKDLPADEVKIDRAFLDGIME 423

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  A  I+ + I +AK +   +  + +  +   K L  MG D IQ  + A P+    +  
Sbjct: 424 QERARNIMTTSIQLAKRLGFEVTVEGVESDALRKMLAAMGADNIQGQYFARPMRALELEM 483

Query: 952 LLKERFPLVKNT 963
            L+ R  + +  
Sbjct: 484 DLR-RLGIARRA 494


>gi|327441608|dbj|BAK17973.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 667

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 116/539 (21%), Positives = 228/539 (42%), Gaps = 20/539 (3%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D       T     T        + G     L   +         I  +    +    
Sbjct: 143 TLDQDGFITQTNQQFLTASHWTPKRVIGKTLWQLFPQNPESEKVVLEIWKTLQNGQ--VW 200

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           Q E      D Q +W+ +   PM     +   Y+ I  +IT++KK    +   A+ D  T
Sbjct: 201 QGEVEQLTKDEQLYWVHLTAIPMMGQTSEKNEYMLIERNITKEKKIQFQLEKIAYIDTET 260

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ N    + RL  I+     +D    + + + IDK+  I D+     G+ ++V  T+R+
Sbjct: 261 GMMN----VHRLEQIIGEMIEEDR-HFSFVYLSIDKFYTIKDLHDGVAGNSLIVDFTKRM 315

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +      +AR++ + F +I                +      PI      + ++ S G
Sbjct: 316 K-MYFQDSTMARINESEFVVITPLPE-----WFTQGFLNYLQQNPIYSGNVAVPLSLSGG 369

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
              +   ++T S+++K +   +   +  GG+ + S   SS  +      +++ L LA++ 
Sbjct: 370 ITRFPEDQMTFSQLMKASLATIASVRSAGGDSIVSLSKSSHAALNRRSIVEKRLLLALDQ 429

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L+++Y P + L    I  +EAL++WD  + G +S  E + IAEE  +I  I  FMLE+
Sbjct: 430 KNLHVLYQPQVDLKSGNITAVEALVRWDDEEIGAVSPDELIPIAEETGLINNIGSFMLEK 489

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                + W++  +   I + IN + ++  D  + + +   + +T    + +++  +E   
Sbjct: 490 ACEQAVLWKNAGH--AIKVSINSSVREFRDKNMAKSILETLDRTGCPANLLQIEITEKFA 547

Query: 838 MGNPERS--RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEK 894
           +     +     +  L K GI   LDDFGT      Y+  +P   +K + + +    ++K
Sbjct: 548 LEAEAETGIIKQMRALEKEGIVFVLDDFGTGYGSFRYMQLLPISILKIDQTFIHSLKSKK 607

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              ++  ++ + K++  T++A+ +  E  ++ LT +GCD+IQ   V+ P     I  LL
Sbjct: 608 NQQLVNGMVQLGKSMNLTVVAEGVETEEQMQFLTSIGCDFIQGYFVSKPSSTEEISSLL 666


>gi|172035455|ref|YP_001801956.1| hypothetical protein cce_0539 [Cyanothece sp. ATCC 51142]
 gi|171696909|gb|ACB49890.1| hypothetical protein cce_0539 [Cyanothece sp. ATCC 51142]
          Length = 667

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 217/552 (39%), Gaps = 54/552 (9%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
             +    D++            +     +LG    ++ G  R    + H  D+   +   
Sbjct: 154 FILDNLPDLITTHSKEGIFQYVSQVSYQLLGYIPQALIG--RTLASFCHGQDQVLIKQFY 211

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLE 527
              +  ++      +R+   +  + W+    + + +   G+I   + ++ +IT++K+ +E
Sbjct: 212 QE-LEQKKSLASVIYRMSHQEGYYLWIETLGKVILHPQTGEIQEILCVSRNITKRKQ-IE 269

Query: 528 GILCNAFQDNLTGIPNRQSF--LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             L  A          RQ +   ++    +   + +         ID++    +  + G 
Sbjct: 270 EALIQAE---------RQYYKIFEKSNQGIFQLSPEG------YFIDVN--PALAQLYGY 312

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
               D+L S+ +R        + +  + G     +L       +I +F   +       I
Sbjct: 313 NNPQDLLESIHKR-------TNPVY-VEGKNHDSLLDILKTDGEIINFQSQIYCKNGEII 364

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           ++ E    V        +     T  +++                     ++      R+
Sbjct: 365 DIEETIWAVYDQCEQILYYQG--TVQKVIN-------------------PQIKGDTLTRI 403

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A++N +L L Y PI+ L    + G EALI+W HP  G IS  EF+ IAEE  
Sbjct: 404 QLETDLRQAIKNKQLSLYYQPIVELDTGHLSGFEALIRWQHPIKGPISPIEFIPIAEESG 463

Query: 766 MIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGMQALISKTLYS 824
           +I  +  ++LE+    + +W++       + + +N++++ L      E +  L+ K    
Sbjct: 464 LINTLGWWVLEQACYQLQTWQNLNTQAAKLVMNVNVSAQQLKQETWVERLNHLLEKMGVE 523

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             ++KL  +ES ++   +     + +L+ +G+ L +DDFGT  S LS L   P DT+K +
Sbjct: 524 GKQLKLEITESCLLETVQNETQRVRQLKNLGLGLCIDDFGTGYSSLSRLHEFPIDTLKID 583

Query: 885 GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            S ++        I+  II +A  +   ++A+ I       +L  + C+  Q    A P+
Sbjct: 584 RSFISKLGISDKVIVPMIINLAHTLGMNVVAEGIETREQFNQLQGLNCELGQGFFFAKPM 643

Query: 945 GFNSILKLLKER 956
                   + + 
Sbjct: 644 TGEQATHWVMQE 655



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 403 DGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +R      LA+    D++    +    +  +P   + LG       G     L   H 
Sbjct: 17  SEQRVNYYHQLALDNLMDVISFHTVEGIYLYISPSCQSFLGYEPQVFIGQSAEVL--CHP 74

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIAN 517
            D D  RT                +R+R A   + W+    + + N   G+I   + I+ 
Sbjct: 75  EDCDVIRTFYQQLKQQWNSD-PITYRIRHAVGHYVWLETSAKVIPNQKTGEIQEILCISR 133

Query: 518 DITEQKKSLEGI 529
           ++T+QK++ E  
Sbjct: 134 EVTKQKQNQEHF 145



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 60/217 (27%), Gaps = 35/217 (16%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             V +++       + +     +       S   ++        +   P +A + G    
Sbjct: 256 LCVSRNITKRKQIEEALIQAERQYYKIFEKSNQGIFQLSPEGYFIDVNPALAQLYGY--- 312

Query: 444 SMHGPIRNWLPYIHINDRDNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
                 ++ L  IH      +        L   +      + ++ ++   + +   +   
Sbjct: 313 ---NNPQDLLESIHKRTNPVYVEGKNHDSLLDILKTDGEIINFQSQIYCKNGEIIDIEET 369

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I  + +    IL Y G       QK     I      D LT    R      L   +   
Sbjct: 370 IWAVYDQCEQILYYQGTV-----QKVINPQIKG----DTLT----RIQLETDLRQAIKNK 416

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
                 +P   ++++D         G   G + L+  
Sbjct: 417 QLSLYYQP---IVELDT--------GHLSGFEALIRW 442


>gi|218676084|ref|YP_002394903.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218324352|emb|CAV25711.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 650

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 197/460 (42%), Gaps = 26/460 (5%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ND +EQ   +  +      D+LTG+ NR    D L +I   S        T+ ++DI+ 
Sbjct: 202 FNDRSEQ--LVNQLSYEVSHDSLTGLLNRSCLSDTLESITQQSV----TPFTLALLDINS 255

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND+ G  +GD VL  +   +   L   ++  R +GN F  I               
Sbjct: 256 FKAINDMHGNYIGDKVLQFVAETLRRTLPDNNLTFRTAGNEFAFI----TYHSDPIAVCE 311

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I      ++ +I    SIG A          +++ N  LA+   +H    +++ +
Sbjct: 312 QILDKIKQGYTSIDIKIDFDVSIGIARSDGDNKDVEQIIFNTSLALKECQHSQDTYIQCY 371

Query: 696 RVSSFRSDRV--MIKEDLC----------LAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                   +    +   L            A  ++ +Y+V  PI+  +D      E L +
Sbjct: 372 DTHLRVRYQRKTELIAALRSELDSPISDSQAPNDNGMYVVVQPIVDHIDTRWDYFEVLTR 431

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W   + G+IS  EF+ +AEE  +I  +   ++E + R   +  ++     + + IN ++ 
Sbjct: 432 WKTTRHGDISPVEFIQVAEESGLIVELGERIIELVCR-AKTRLERGLGYKVKLGINCSAH 490

Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +L D+      +   I +  +  +   +  +E+V++   + ++  L  LR  G ++ LDD
Sbjct: 491 ELTDSKRYISYLTRTIEQHHFKANEFVIELTETVLLSPTQETKSALDFLRGQGFTIALDD 550

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+Y+   P D +K + + +          +++  I+ +A  +  +++A+ +  
Sbjct: 551 FGTGYSSLNYIHSYPIDCIKIDATFIRNLLTNSTSESVVWLIVQLAHRLNVSLVAEGVEK 610

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              +++L  MGCD IQ    + P+   +I+  +    PL 
Sbjct: 611 REQLEKLHAMGCDKIQGYLYSPPMRPEAIVSYVTHSEPLA 650


>gi|254295473|ref|YP_003061496.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
 gi|254044004|gb|ACT60799.1| diguanylate cyclase/phosphodiesterase [Hirschia baltica ATCC 49814]
          Length = 574

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 202/460 (43%), Gaps = 25/460 (5%)

Query: 514 GIANDITEQKKSLEGILC-NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
               ++T +  ++       +  D LTG+ NR  F+ ++   +  +        +V++ID
Sbjct: 109 AAIEEMTSRYDAVIRKSYKMSISDPLTGLVNRAQFVKKVEMSILSAGER---SVSVIIID 165

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI--------------LARLSGNRFG 618
           +D++ ++ND  G  + D++LV +  R+   L+  D               L+RLS + F 
Sbjct: 166 LDRFTRVNDKFGPQLADELLVMVGARLKAYLREADTEIRGMEQSQEAPSILSRLSADVFA 225

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++        +      +R  +  P  L  R + +TA+   AS  +    + E++K  +
Sbjct: 226 VLIP-FTTQHVVEKMVEFLRFELERPFTLDGRMVELTAAYAAASAPADAPNAGELMKQVD 284

Query: 679 LAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +++  +K      ++ +  S        + +++D+   +EN E   V+ P + L    ++
Sbjct: 285 ISLKMSKQSKFKGLQFYDSSMHETAQRNLTLEDDIRHGIENHEFIPVFQPKVELETGVVI 344

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL +W  P    +S   F+  AEE+ +I  +   +L         W    + P   +
Sbjct: 345 GAEALARWRRPDGAVVSPGVFVPKAEEMGLIPQMGASILRDACVQAAKWDFNGHKP--RL 402

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++     D      ++ ++ ++  +P  ++L  +E+  + NPER   ++  LR  G+
Sbjct: 403 AVNVSPLQFEDPNFFSIVEEILEESGLAPELLELELTETAAVDNPERVAKIMRPLRAKGV 462

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTII 914
              +DDFGT  S  + +  +PFD  K +   +   GS     AI+  I+ MA+ +    +
Sbjct: 463 RFAIDDFGTGHSNFTTVTRLPFDVFKIDQQFVRAHGSDPHAPAIIEMILAMAEALGQETV 522

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           A+ +  +   + L R  C   Q    + PL  +   + ++
Sbjct: 523 AEGVETQEHYEFLRRRACTIGQGYFFSPPLPAHEFEEFVR 562


>gi|253581659|ref|ZP_04858883.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836008|gb|EES64545.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 748

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 174/435 (40%), Gaps = 11/435 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + K  + I   A+ D+LTG+ N   F      IL            V  +DI  +K IND
Sbjct: 314 RTKYEKEIEKIAYNDSLTGLMNFVKFKLEGNKIL---KDMPLGNYAVFYMDIRNFKMIND 370

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           V     GD ++  +   + E      ++AR+S + F +++   N    + D    + K +
Sbjct: 371 VFSYKKGDKIIQGIANELKEFFPKESLVARVSADNFVVLVKYLN-KDILEDDLNDIIKRM 429

Query: 642 AMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +    + + E  +    G      S+    + +L  A +A  +AK      +  +  +  
Sbjct: 430 SSNRYVKDMEYHLDIYGGVCCREDSEKNDVNTILDRANMARKYAKDSKSKKLIFYNKTMS 489

Query: 701 RSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                    +L    A+ N E  +   P   L      G EALI+W     G IS  EF+
Sbjct: 490 EILLREQNMELRKEEALRNGEFIVFIQPKYSLETGRAEGGEALIRWRT-NGGYISPGEFI 548

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I +I+ +M E + +    W D+       I +N++ + L +    E      
Sbjct: 549 PLFEKNDFIVSIDKYMHEEVCKLQRKWLDEGLKV-FPISVNVSKRQLYNPYFAEEYIETK 607

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++       I+L F+ES+     E    ++ +L + G   ++DDFG+  S L+ L  +  
Sbjct: 608 NRYKLPDGLIELEFTESIFFEKYEVISGIVKKLTEYGYICSIDDFGSGYSSLNLLKDVSL 667

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +          +    I+R++I MA+ +   I+A+ +     ++ L  + CD +Q
Sbjct: 668 GVLKIDRLFFENLENNKRGDIIIRNVINMAQELNMKIVAEGVETFEQLEFLKSVNCDMVQ 727

Query: 937 DSHVASPLGFNSILK 951
                 P+       
Sbjct: 728 GYIYDRPMPVEEFEA 742


>gi|152967886|ref|YP_001363670.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362403|gb|ABS05406.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 761

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 194/431 (45%), Gaps = 10/431 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT +  R  F  R+   L  S         ++ +D+D +K++ND  G   GD
Sbjct: 323 EHRATHDALTDLLGRDEFTRRVEEDLTASRGPGGPGVHLLFVDLDGFKRVNDTHGHGAGD 382

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           ++L  +  R+  L     ++ RL+G+ F +      ++      A  +   +  P+ L  
Sbjct: 383 ELLCEVAARLRALAPPHAVIGRLAGDEFVVAATGGVDT--AVGLARDLLDGLRTPVPLPV 440

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMI 707
            E+ V+AS+G A  T    + +  L+ A+ AMY AK RG N    +   +     D+V  
Sbjct: 441 GEVVVSASLGIAEVT---TSLAVALREADAAMYRAKSRGRNQFVVWDAAMREEIGDQVEF 497

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL  AV    L + Y  ++ + D    G+EAL++W HP  G +S  EF+ + EE  ++
Sbjct: 498 ELDLRSAVAEQALEVHYQAVVAVADGTPRGVEALLRWIHPLHGPVSPVEFVPVLEETGLV 557

Query: 768 KAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
             +  ++L+    D+ +WR          + +N++ + LLD    E ++  +        
Sbjct: 558 VDVGRWVLDTALADLSAWRRDGVVGDDFVLSVNVSPRQLLDPYFAETVRERLQAHGVEGR 617

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +ES ++ + ER+  LL  LR +G  L +DDFGT  S LSYL   P   VK + S
Sbjct: 618 SLLLEITESSLLEHDERTLRLLESLRSLGAGLAVDDFGTGYSSLSYLRSFPVTRVKVDRS 677

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + G        A++R+++ +++ +   + A+ +  E   + L  +   + Q        
Sbjct: 678 FVAGVNHHVGDEAVVRAVVAVSEALALAVTAEGVETEDQRRTLQELSVAHGQGWLWHRAQ 737

Query: 945 GFNSILKLLKE 955
                   L+ 
Sbjct: 738 PAGETAAYLRA 748


>gi|325971519|ref|YP_004247710.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
 gi|324026757|gb|ADY13516.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
          Length = 714

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 105/439 (23%), Positives = 208/439 (47%), Gaps = 11/439 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             + ++  AFQD LTG+PN+  F+   + +L+ + +       V++ DI K+K IND  G
Sbjct: 280 YEQELMHLAFQDELTGLPNKNHFVQESSLLLERARS----PYAVIIFDIGKFKLINDHFG 335

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD +LV  ++ +        + ARLSG++F I+L S      +      + + +   
Sbjct: 336 YAFGDSLLVHFSKVLPRYTTKDGVCARLSGDKF-ILLCSYREKETLERRISVITEELKRF 394

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702
                    +   IG +    +K+  ++ +  A  A+   K R   G+      + S   
Sbjct: 395 SFPGTSPFQLDILIGVSLIEGNKVPINQAVDKALFALSALKERQTSGHLYYDEVLRSQLL 454

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +   +++    A+++ E ++V  P   L    +VG EAL++WDHP  G +  S+F+ + E
Sbjct: 455 EESELEKVFTKALKDGEFHIVLQPKYSLTTRHLVGCEALVRWDHPSKGLLPPSQFIPLLE 514

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  ++  +++F+LE++ + +  W+ +       I +N +   L +    + +  +I +  
Sbjct: 515 KHNLLVTLDMFVLEQVCKLVRQWQSKGLPIH-PISVNQSRSYLFNTHYDQSLVDMIDRYE 573

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                I+   +ES+ + + +   L+L  LR     ++LDDFG+  S L+ L  +  D +K
Sbjct: 574 VPHHLIEFELTESLFLNDVKHLSLVLASLRSHSFLVSLDDFGSGYSSLTMLKDVAIDVIK 633

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   + GS E +    +++ II +A  +  T +A+ +     ++ L ++GCD +Q    
Sbjct: 634 LDQGFLKGSDEHQRGMVVVQHIISLANQLGITTVAEGVETREQVQMLQQLGCDVVQGFFF 693

Query: 941 ASPLGFNSILKLL-KERFP 958
           + PL       LL  +R P
Sbjct: 694 SQPLQVAEYEALLIDDRLP 712


>gi|317063915|ref|ZP_07928400.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689591|gb|EFS26426.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 721

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 194/435 (44%), Gaps = 12/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E I   A++D +T       F   +   L      +    T++ +DI K+K IN+  
Sbjct: 290 KKNEEISKIAYEDPITKGFTSARFEIDVRKRLT---EKEFKPFTLVSLDIRKFKLINESF 346

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+ VL  +   I   L   + ++R+S + F I+L S  +  +I      +   I  
Sbjct: 347 GEEKGNFVLRYVHDCIKRSLGKNESVSRISSDTFNILLDSI-DESEIKCKMKNLSALINE 405

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSF 700
               +E    ++   G     +  +    +      A  ++K+       +   F  +  
Sbjct: 406 FNTDVETPYYLSIDCGAYIVKNENLNVIVIRDRVNHARKNSKNSSNTELFYNCVFYNNIE 465

Query: 701 RSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             + +    I++++  A+EN+E  +   P + +   +I G EAL++W  PK G I   EF
Sbjct: 466 IENSLKEKNIEDNMERALENNEFVVYLQPKVEIKSNKIAGAEALVRWLDPKKGIIPPLEF 525

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+   I  +++++ E + + I +W D+    P+ + +N++   L +    +  + +
Sbjct: 526 IPIFEKNGFIGKLDIYVFEEVCKMIRNWLDEGTN-PVPVSVNLSRMHLQNPHFLKKYKEI 584

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K       +++  +E++V  N E  + ++  + ++G   ++DDFG+  S L+ L  IP
Sbjct: 585 QMKYNIPADLLEIELTETMVFENFEHLKKIIDEIHQMGFYCSIDDFGSGYSSLNLLKEIP 644

Query: 878 FDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K +       + E+   ++ SII +AK +  T I++ +     +  L ++ CD +Q
Sbjct: 645 VDILKLDRVFFSKENDERGNNVIESIISLAKKLNMTTISEGVETISQVDFLKKINCDLVQ 704

Query: 937 DSHVASPLGFNSILK 951
               + PL  +S  K
Sbjct: 705 GYVFSKPLNRDSFEK 719


>gi|257469683|ref|ZP_05633775.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
          Length = 740

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 194/435 (44%), Gaps = 12/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E I   A++D +T       F   +   L      +    T++ +DI K+K IN+  
Sbjct: 309 KKNEEISKIAYEDPITKGFTSARFEIDVRKRLT---EKEFKPFTLVSLDIRKFKLINESF 365

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   G+ VL  +   I   L   + ++R+S + F I+L S  +  +I      +   I  
Sbjct: 366 GEEKGNFVLRYVHDCIKRSLGKNESVSRISSDTFNILLDSI-DESEIKCKMKNLSALINE 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSF 700
               +E    ++   G     +  +    +      A  ++K+       +   F  +  
Sbjct: 425 FNTDVETPYYLSIDCGAYIVKNENLNVIVIRDRVNHARKNSKNSSNTELFYNCVFYNNIE 484

Query: 701 RSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             + +    I++++  A+EN+E  +   P + +   +I G EAL++W  PK G I   EF
Sbjct: 485 IENSLKEKNIEDNMERALENNEFVVYLQPKVEIKSNKIAGAEALVRWLDPKKGIIPPLEF 544

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+   I  +++++ E + + I +W D+    P+ + +N++   L +    +  + +
Sbjct: 545 IPIFEKNGFIGKLDIYVFEEVCKMIRNWLDEGTN-PVPVSVNLSRMHLQNPHFLKKYKEI 603

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K       +++  +E++V  N E  + ++  + ++G   ++DDFG+  S L+ L  IP
Sbjct: 604 QMKYNIPADLLEIELTETMVFENFEHLKKIIDEIHQMGFYCSIDDFGSGYSSLNLLKEIP 663

Query: 878 FDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K +       + E+   ++ SII +AK +  T I++ +     +  L ++ CD +Q
Sbjct: 664 VDILKLDRVFFSKENDERGNNVIESIISLAKKLNMTTISEGVETISQVDFLKKINCDLVQ 723

Query: 937 DSHVASPLGFNSILK 951
               + PL  +S  K
Sbjct: 724 GYVFSKPLNRDSFEK 738


>gi|153955441|ref|YP_001396206.1| signal transduction protein [Clostridium kluyveri DSM 555]
 gi|146348299|gb|EDK34835.1| Predicted signal transduction protein [Clostridium kluyveri DSM
           555]
          Length = 373

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 176/362 (48%), Gaps = 4/362 (1%)

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            ++ I  +L     L ++  + F I++   N    +      + +    P  +++ +I +
Sbjct: 3   FSQSIIRILDKYGELGKVGEDEFAILVSEFNTIKDVKKICNKIHRCFQEPFKIMDYKIYI 62

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLC 712
             +IG + +        E+LK    AM   K +G N    F    F      I  + +L 
Sbjct: 63  EVNIGISIFPEHGSEGHELLKYCYFAMNSFKEKGKNPYAFFDKQVFDIYCRRILIENELK 122

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            ++ N+EL + Y P + ++  +I+G+EAL++W++ K G +S  EF+ I E+   I  I  
Sbjct: 123 NSIFNNELEVYYQPQVDILSNKIIGVEALLRWNNKKLGRVSPEEFIPIIEKNGYIVEIGN 182

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++L+++   I +W+++       + +NI+   L  ++    + A  +K    PS ++L  
Sbjct: 183 WVLDKVIYTIHNWKEKGIQLD-SVAVNISPVQLKKSDFKNKVLAFCTKYDVPPSLLELEI 241

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E  ++   + S  +  +L +  I++ LDDFGT+ S LSYL  +P  T+K +   +    
Sbjct: 242 TEGTLLEMSDNSIKVFNQLVESNINIALDDFGTRYSSLSYLVSLPVSTLKIDKLFVDNIQ 301

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            EK   ++RSI+ ++K++   II + +  +  +  L  +GC+ IQ  + + PL    +  
Sbjct: 302 YEKNKILIRSIVDLSKSLNCRIIVEGVETKAQVDILNNLGCNIIQGYYFSKPLSQKELEN 361

Query: 952 LL 953
           LL
Sbjct: 362 LL 363


>gi|298291290|ref|YP_003693229.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Starkeya novella DSM 506]
 gi|296927801|gb|ADH88610.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Starkeya novella DSM 506]
          Length = 693

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 204/471 (43%), Gaps = 18/471 (3%)

Query: 503 SNSNGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
            +  GD+ R      D           ++K+       A  D +TG+PNR +F   L + 
Sbjct: 230 RDEIGDLARACVAFRDSLLSLSLSEKAREKAELEREHVAGHDLVTGLPNRATFTSLLGSA 289

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     + +    VM +  D  + + ++ G AV D+++  + RR+       ++ ARL G
Sbjct: 290 LARGGQNASTYLLVMAV--DGLRSVAELHGAAVRDEMVREIARRLKAEA-PQEVTARLEG 346

Query: 615 NRFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
             FG+  + S  ++      A  + +++  PI +    + +   IG ++  +   ++SE+
Sbjct: 347 GLFGVFTVGSSRSTAGAKRLAGRLLEALDRPIVVGPATLELRTRIGISTHPADARSASEL 406

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           ++ AELA+          +   R+         ++ D+  AV    +   + P++     
Sbjct: 407 VRLAELALSRGAEGARTILFEARMDRELRLEAAMEADVKAAVAGEAMVPWFQPVVETATG 466

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G+E L +W       +   EF+ + E L ++  + L ++ +  R    W        
Sbjct: 467 VIFGVEMLARWPREGGEIVGPGEFIPVVERLGLMNELTLSLMRQAFRSARDWPR-----D 521

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I + +N ++  L +  L   + +L+ +  + P R+++  +E  ++     +   L  LR+
Sbjct: 522 IHLGVNFSASQLNEGTLPPRLLSLLQEEDFDPHRLEVEVTEDALLNYEGAAMNALNTLRE 581

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETT 912
           +G SL +DDFG   S  S L  + FD +K + S + G   +    I+ ++I +A  +   
Sbjct: 582 LGASLVIDDFGMGYSSFSQLRTLAFDRLKIDRSFVQGMRGELDGRIVDAMIGLASGLGID 641

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           ++A+ +  E   + L   GC + Q  H A P+  + + +LL    PL    
Sbjct: 642 VVAEGVEEEWMARLLVEKGCRFAQGFHFARPMPADRLARLLAGGRPLPAPA 692


>gi|260683500|ref|YP_003214785.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687096|ref|YP_003218229.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209663|emb|CBA63369.1| putative signaling protein [Clostridium difficile CD196]
 gi|260213112|emb|CBE04517.1| putative signaling protein [Clostridium difficile R20291]
          Length = 498

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 192/425 (45%), Gaps = 18/425 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D +TG  N + F   +T +L    T  N +  +++ DIDK+K IND+ G   G+ +L
Sbjct: 85  AYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLIL 142

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + EL    +  AR+S + F I+L                     +   +   E+
Sbjct: 143 KDIADTLNELTNINETFARVSADNFNILLTYN----------KKEDIINIIKKIIANNEL 192

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            V  S G        ++ S     A LA    K+    +   F         +   I+++
Sbjct: 193 -VNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFNDKLREKLLLEDKIEKE 251

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E+ +  +   P   +  ++  G EAL++W + +   I   +F+ I E+   I+ I
Sbjct: 252 MEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPGDFIPIFEKNGFIRKI 311

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           ++++LE+  ++I S  D+  + P+ I +N +  D L  +  E +  +  +     S I++
Sbjct: 312 DMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFLKKDFIENIVNICDRYKIPYSLIEI 370

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS-LMT 889
             +ES + G+ +    +   L+ IG  + +DDFG+  S ++ L  IP + +K +    + 
Sbjct: 371 EITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVD 430

Query: 890 GST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +K   +++SI+ + K +   ++A+ I     I+ L +  CD +Q  + + PL    
Sbjct: 431 DKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDIVQGYYFSKPLPIKE 490

Query: 949 ILKLL 953
             KL+
Sbjct: 491 FEKLV 495


>gi|296129686|ref|YP_003636936.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
 gi|296021501|gb|ADG74737.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
          Length = 806

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 128/658 (19%), Positives = 249/658 (37%), Gaps = 56/658 (8%)

Query: 292 CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWF 351
                            +   + +A + +     + Y  +    R  L +   +L+    
Sbjct: 130 TALWFLTFGPVDAAGVPTGRPLAVALLFVVLGIVVGYV-VAALGRVRLNLLGVLLVVAAG 188

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           + L M     L  +    AL+  L  + + IG   +  V       Q      E    A+
Sbjct: 189 LSLAMLTAGILLGEQPVAALLASLWPLPLAIGLEWLASVRLRRA--QVTARRRELMRDAL 246

Query: 412 LG-SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
              +    +  D     V        +LG    ++ G +R          RD +   L  
Sbjct: 247 SAVTNSAWFHRDADALLVQARDAAREVLGDP--TIEGSLR-------PLQRDRYVADLFP 297

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                    +  F +                      D+   +  A    E+    + + 
Sbjct: 298 ADPDVLAPHERTFLI----------------------DLGLVVSTAA---ERYALTDRLS 332

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+PNR++    L  +L+     +  R  V+  DID +K +ND  G A GDD
Sbjct: 333 RAAVTDTLTGLPNRRAVDTHLLEVLER-GAVERTRVAVVYCDIDGFKDVNDREGHAAGDD 391

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI-NLLE 649
           +L      +   +     +ARL+G+ F +++       ++ D A  +R      +  +  
Sbjct: 392 LLRRTAGFLRTWVDDDTYVARLAGDEFAVVVSRAGTDEELDDVARRIRSGFGTRVGTVAG 451

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIK 708
             +T           +  +    +L++A+ AM  AK  + G+ V    + +   D   ++
Sbjct: 452 PRLTCGV---ATWNPTDIVDPDALLRHADAAMLEAKRTKSGHRVFDPALRAQAEDARRLR 508

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  AVE   +   + PI+     E+VGLEAL +W H     I    ++ +AE+  +I 
Sbjct: 509 AALERAVEEDRITAYFQPIVDTRTLEVVGLEALARW-HEDDTLILPELWLTLAEQSGLIV 567

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I   M+ +        R   +   + + +N+++++L + ++ E + A    +      +
Sbjct: 568 PIGRSMIRQA-------RRALDRHHMPVAVNLSARELHEQDVLERIDAAW--SGGPWEHL 618

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES ++     +  +L  LR  G  + LDDFGT  S L+ L  +P D +K + S +
Sbjct: 619 TIEITESTMLR-TAAAVPVLSELRARGARIALDDFGTGFSSLARLARLPVDVLKIDRSFV 677

Query: 889 TG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
               T +    +R+I+ +A++    ++A+ +    D++ L  +G    Q + V  P  
Sbjct: 678 REVRTPRGAGPVRAIVALAEHHGLDVVAEGVESAGDLEILVELGVQQAQGNFVGRPAP 735


>gi|41408610|ref|NP_961446.1| hypothetical protein MAP2512 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396968|gb|AAS04829.1| hypothetical protein MAP_2512 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 757

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/459 (24%), Positives = 214/459 (46%), Gaps = 18/459 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-------TDDN 563
           R+     D++     L     +A  D LT +PNR+  +  L  +   ++       +  N
Sbjct: 299 RFSLTFRDVS----LLHSHDRHAMTDELTALPNRRQLVTALQGLPASASPGAGSMPSRAN 354

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  ++++ +  + +I + +G   GD++L  +  R+   ++  D+LAR+  ++F ++L  
Sbjct: 355 PRRALLLLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLLARVGDDQFAVLLAD 414

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             N    +  A  + ++++ PI L    I V   I  A          E+L  AE A+ H
Sbjct: 415 GANLTAASAQAGRLLEALSEPIALDPITIQVDGRIAIALCPDHCDHPRELLSRAETALAH 474

Query: 684 AKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  R    V      + R +   + E+L  A  +  EL L Y P I   D  I  +EA+
Sbjct: 475 AKSARSKIAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAV 534

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP  G +   EF+ +AE   +++ I+   L    + + SWR++     + + +N++
Sbjct: 535 LRWQHPTRGTLLPEEFLPVAERAGLMRKISNRTLSMALQQVRSWREEGLR--LTVAVNLS 592

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + +LLD EL   ++ L++        + L  +ES ++ +  RSR  +  L+++GI +++D
Sbjct: 593 TTNLLDIELVGTVERLLANYDLPADALILEITESALV-DSVRSRNTVTALQRLGIRISID 651

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
           D+GT  S L+ L  +  D +K +   +          AI+RS + +A N+   ++A+ + 
Sbjct: 652 DYGTGWSSLARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVE 711

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            E  +  L R GC+  Q      PL  + +   +    P
Sbjct: 712 NEDTLDALRRYGCNITQGFVHTPPLPPDELRAWIASHAP 750


>gi|254975476|ref|ZP_05271948.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255092864|ref|ZP_05322342.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314606|ref|ZP_05356189.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517280|ref|ZP_05384956.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650386|ref|ZP_05397288.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 493

 Score =  352 bits (904), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 192/425 (45%), Gaps = 18/425 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D +TG  N + F   +T +L    T  N +  +++ DIDK+K IND+ G   G+ +L
Sbjct: 80  AYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLIL 137

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + EL    +  AR+S + F I+L        I                +   E+
Sbjct: 138 KDIADTLNELTNINETFARVSADNFNILLTYNKKEDIINIIKK----------IIANNEL 187

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            V  S G        ++ S     A LA    K+    +   F         +   I+++
Sbjct: 188 -VNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFNDKLREKLLLEDKIEKE 246

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E+ +  +   P   +  ++  G EAL++W + +   I   +F+ I E+   I+ I
Sbjct: 247 MEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPGDFIPIFEKNGFIRKI 306

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           ++++LE+  ++I S  D+  + P+ I +N +  D L  +  E +  +  +     S I++
Sbjct: 307 DMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFLKKDFIENIVNICDRYKIPYSLIEI 365

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS-LMT 889
             +ES + G+ +    +   L+ IG  + +DDFG+  S ++ L  IP + +K +    + 
Sbjct: 366 EITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVD 425

Query: 890 GST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               +K   +++SI+ + K +   ++A+ I     I+ L +  CD +Q  + + PL    
Sbjct: 426 DKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDIVQGYYFSKPLPIKE 485

Query: 949 ILKLL 953
             KL+
Sbjct: 486 FEKLV 490


>gi|251770887|gb|EES51473.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 823

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/451 (21%), Positives = 179/451 (39%), Gaps = 13/451 (2%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G ++  + +   +       + I   A +D LT + N++ F + L   +  +      R 
Sbjct: 378 GFLVSILNVLGSVKALSLYNKEIEYYAVRDPLTRLFNQRVFWELLEYEVGRAKRH-RTRF 436

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            + VID+D +K +ND  G + GD  L ++   +   ++  DILAR  G+ F +IL   + 
Sbjct: 437 VLCVIDLDDFKGVNDAYGHSTGDAFLKAMADLLINEIRLGDILARYGGDEFTLILPKTDL 496

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITV--TASIGFASWTSSKITSSEMLKNAELAMYHA 684
              ++       K     ++  E    V  + SIG A++     T  ++   A+  MY A
Sbjct: 497 PGALSFIGRLKEKITEFRMDPGEGHPPVEASVSIGLAAFPDHADTHQDLFTVADQMMYRA 556

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  G N V +  +          K D  L   +   ++   + P I L   EIVG E L 
Sbjct: 557 KQAGKNTVRAPMIEEALHLHATAKRDAHLLQLIREKQVMPYFQPFIDLASGEIVGHEVLA 616

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        + + EF+ +AE   ++  ++  +LER          +       +  N+  
Sbjct: 617 RLRDTDGQIVPAGEFIALAERAGLVATLDFDILERALS-----LAEERDIRGRLFFNLTP 671

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             +   +    +   + K     S++    +E   + N      ++  L+++G   ++DD
Sbjct: 672 NAMAIPDFVPRIVESVQKHRIPTSQLAFEITEREAIKNIRIVETMIRELKELGFLFSIDD 731

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTG---STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           FG   S   YL   P D +K +   + G   S    +AI+ SI+ +A ++    + + I 
Sbjct: 732 FGAGFSSHHYLRAFPVDYLKIDAPFIQGAGRSHAVDLAIVHSIVRLATSLGVQTVGEGIE 791

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            E D++     G    Q   +  P       
Sbjct: 792 TEADLEAAKSCGVTLGQGFFLGMPAPAPQAA 822


>gi|313898668|ref|ZP_07832203.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312956552|gb|EFR38185.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 772

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 103/439 (23%), Positives = 185/439 (42%), Gaps = 15/439 (3%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  K + E     A+ D +T       F   +  ILD            + +DI K+K I
Sbjct: 319 TNTKFNKEIYRV-AYVDPVTNGFTAPRFEKEMQGILDNFQ-----PFAFVSVDIRKFKLI 372

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD VL  +   +   LK  + LAR+S + + ++L    +  +I +   AM  
Sbjct: 373 NDSFGSRDGDRVLQYVHDCLQSYLKEGEFLARISSDTYNLVLF-TTDMAEIRERLEAMTD 431

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRV 697
            +       E+   +    G    T S I    +   A  A  + K           F  
Sbjct: 432 KVNSYNQSKEQTYYLPLDCGIYIVTDSSIDIVNIRDRANTARKNNKDMISRHMCSCVFYD 491

Query: 698 SSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              R   +    ++  +  A+EN E  +   P I L   EIVG EAL++W+    G IS 
Sbjct: 492 DYDRVQMLKEKKMENSMQQALENGEFIVYLQPKINLEKSEIVGAEALVRWNSQD-GLISP 550

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+   E+   I  ++L++ + + R +  W +   + PI I +N++   LLD +  +  
Sbjct: 551 GEFIPFFEKNGFIVKLDLYVFDCVCRLLQDW-ENRGIAPIPISVNLSRNHLLDPQFLKKY 609

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A+      +   ++   +E+VV  N E  + ++ ++   G   ++DDFG+  S L+ L 
Sbjct: 610 EAIQKTYGIASHLLEFELTETVVFENLELLKNVIAQIHAAGFQCSMDDFGSGYSSLNVLK 669

Query: 875 YIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            IP D +K +G+        +   ++ + I +A+ +    +A+ +     ++ L    CD
Sbjct: 670 EIPVDILKLDGAFFDKEGDPRGNDVVETAIELARKLGMKTVAEGVETFTQVEFLRNADCD 729

Query: 934 YIQDSHVASPLGFNSILKL 952
            +Q    + PL   +   L
Sbjct: 730 MVQGYVFSKPLSIENFEVL 748


>gi|83646967|ref|YP_435402.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83635010|gb|ABC30977.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 569

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 204/437 (46%), Gaps = 17/437 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + I      D +TG+P R+  L  +   L     D +    V  +D+D+   +  +L  
Sbjct: 134 NQNIRLLEQYDPVTGLP-RKEILLEIANTLFKKKKDSSFCVGVCEVDLDQ--TLIGLLST 190

Query: 586 AVGD----DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              D     +  ++  R+  +     ++  L   +FG++L  E +  + A     ++  +
Sbjct: 191 LDRDMSEKQISRTVVERMSAIFPPGILMGCLGPGKFGVVL--EASENEAASQLRLLQHRL 248

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  +  +E  +  SIG+   +        +   AE+A+  AK  GGN ++ F      
Sbjct: 249 QQPFMIQSQEFLLKFSIGYIPPSMPLQEWRVLFNKAEMALLEAKKEGGNLLKKFIPEMDA 308

Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +       + L  A+ + +  + + P++ +  E +VG EAL++W HP  G IS + F+ 
Sbjct: 309 ENYERWWLSQALFQAMRDQQFEVYFQPLVDISKETLVGFEALLRWQHPDKGFISPARFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE   I  ++L+M+E++ + I++WR       + + INI+   L  ++  E    + +
Sbjct: 369 LAEENGHIYDLSLWMIEQVCQQIVAWRRIGPR--VRMAINISPAQLYRDDFTEDFVDIFT 426

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +P+  +L  +ES +M    +    L  L + G  + +DDFGT  S L YL   PF+
Sbjct: 427 RYHLTPNDFELELTESSLMD--PKGGGQLQALWRQGFDIAIDDFGTGFSNLEYLKKYPFN 484

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++    +   IAI+++I+ +A+++   +IA+ I     +++L  +GC   Q 
Sbjct: 485 RLKIDRSFISNICESSDDIAIVKAILAIAEHMGFKVIAEGIETVQQLEKLRELGCHEAQG 544

Query: 938 SHVASPLGFNSILKLLK 954
            + + P+       +L+
Sbjct: 545 FYFSKPVPATIATDMLR 561


>gi|311696522|gb|ADP99395.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [marine bacterium HP15]
          Length = 866

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 129/735 (17%), Positives = 272/735 (37%), Gaps = 82/735 (11%)

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAI------L 296
               +            +L+  ++I L ++L           +  SG            L
Sbjct: 177 FYEAAANEQKLHFFYYGSLAVIILINLAVFLTLREKLYLYYALAISGYFLFFAAVRGYTL 236

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
             +    P +   +  +++  + ++   F +           L      ++    +  ++
Sbjct: 237 QHIYPGAPFLHTHVLLLSMPFLAMFSILFCMEFLQVRSNSPRLYRALQAMLLFEML-FFL 295

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           +      +  I+ A V       +L+    +                             
Sbjct: 296 SAPMLDYDTGIRVAAVSAFAFFSLLLVAGPVAWAAGVRA--------------------- 334

Query: 417 IVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            V+            +      LGL   +                           +   
Sbjct: 335 GVFFTIAWTPLTIGVSATAGRALGLLPENFFTEY---------------------AMQIG 373

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G   +   +  AD  +     +I+  ++          I      + ++   +      
Sbjct: 374 SGLEAFILTLALADRLYREREQKIQAQAD----------ILKQQKARNEAQTQLNEALTH 423

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+PNR  F   +   L     + N R  V V  I + K+IN  LG+   + +L ++
Sbjct: 424 DPVTGLPNRNRFEWMVDEQL---RQNPNGRFMVGVTRITQLKEINRTLGLDRSERLLKAM 480

Query: 596 TRRIGELLKF-------------PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             ++  L                 + + +LSG+ FG+++     +        A+++ +A
Sbjct: 481 AEQMTRLASGLPMVHHTVDARGNDERVYQLSGDSFGLLVNVSKTADDFQSLDNALKQ-LA 539

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFR 701
            P+ L    I      G AS+      ++ +++NA + M  A H      + S +   + 
Sbjct: 540 EPVLLDNIAIEPNPRFGAASYPEHGKKAALLIRNAHVGMEMAPHGPYQTGLYSRKDDIYD 599

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ +  DL  A+ +++  L Y P I L   ++VG+EALI+W HP  G +   EF+ +A
Sbjct: 600 ESRLTLMSDLREALHHNQTELYYQPKISLATGKVVGVEALIRWHHPDRGWVPPIEFVPMA 659

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +IK +  +++++   D+         P + + +NI+++DL   EL    +    + 
Sbjct: 660 EKTGVIKHLTRWVVDQALNDLKELHAL--DPALTVSVNISARDLSSPELVGLFETRTKRN 717

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++ +  +E+  M +P R    L  L  IG+ L++DDFG   S LSYL  +P   +
Sbjct: 718 QLNPEQVIIELTETAAMDDPHRGLSALNELTAIGLKLSIDDFGAGYSSLSYLKKLPASEI 777

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + +L+     +E    I+ + I M + +   ++A+ +  E   + L ++G + +Q   
Sbjct: 778 KLDRALLQDIESSEGARMIVETAIRMGQGLGYQVVAEGVETEKSARLLNQLGAEMLQGYW 837

Query: 940 VASPLGFNSILKLLK 954
           + SP   + +   L+
Sbjct: 838 ICSPKPLHELQAWLE 852



 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 48/412 (11%), Positives = 124/412 (30%), Gaps = 19/412 (4%)

Query: 1   MLLSNSLRSHFEKAFLILVLFLLWMVSPSFAI-EPINISSSDRVLDLTSITRIYVNQGED 59
           M+LS +LR       + L+    +    + A   P+ ++S      + S  + + +   +
Sbjct: 1   MILSTALR-------IFLLSLATFTSQFAHADSAPVTLASEKP---IESHFQYWEDASAE 50

Query: 60  FQVFTAADIDGISRRIEVS---ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSH 116
            ++     +   + +   S      I     W    + N +      +  + + +     
Sbjct: 51  AELADVRALPDAAWQTNPSGKATFGITDSAYWLRVEVQNQTGRDQLLIAELGYSQFDDVV 110

Query: 117 FFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIY 174
           F     G+      T        R  +  + ++R  + P A  T  + ++T    +  + 
Sbjct: 111 FHELSGGTLLREFATGDTRPFYPRDVDHPNMLYRFHVAPDASKTLYIRVATQGTMVVPLQ 170

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF-AMAWVVLGYIS 233
           +W+ N + +   +         G  +++ +     ++  R  + +    A++   L + +
Sbjct: 171 IWQQNDFYEAAANEQKLHFFYYGSLAVIILINLAVFLTLREKLYLYYALAISGYFLFFAA 230

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
           +    L  +              S   L+   I+F   +L       ++     + +   
Sbjct: 231 VRGYTLQHIYPGAPFLHTHVLLLSMPFLAMFSILFCMEFLQVRSNSPRLYRALQAMLLFE 290

Query: 294 AILFCMS-FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
            + F  +          +A ++  +               G    V    AW  + I   
Sbjct: 291 MLFFLSAPMLDYDTGIRVAAVSAFAFFSLLLVAGPVAWAAGVRAGVFFTIAWTPLTIGVS 350

Query: 353 GLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
                    L  N   + A+  G  L   ++   +   +           +D
Sbjct: 351 ATAGRALGLLPENFFTEYAMQIGSGLEAFILTLALADRLYREREQKIQAQAD 402


>gi|253580031|ref|ZP_04857298.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848550|gb|EES76513.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 600

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 186/448 (41%), Gaps = 23/448 (5%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +    DITE+ +          QD LTG  NRQ F+  +  IL  S         V+  
Sbjct: 170 IVATVEDITEKFE----------QDILTGGYNRQGFIRHVERILKESEDRTG--YAVVFF 217

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           DI  +K +N++ G  +GD +L  +   + +    P + AR   + F  ++  +N +L + 
Sbjct: 218 DIKNFKAVNELFGTEIGDMMLRKVYEDVRKSELKPLVSAREDADHFICLVERKNLNLDML 277

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                        +    + + ++   G       K++ + M+  A++A  +        
Sbjct: 278 TGMCQ------KKLTRGGKTLHLSVKCGIFMLEKKKMSVNGMIDRAKIAQRYITDEFVQS 331

Query: 692 VESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + +  S   +      +  +L   +   +  + + P++     +I   E+LI+W HPK 
Sbjct: 332 YKIYDSSMKNTYIDKATLAGELEEGIAKGQFKVYFQPVVDAKTGKIASAESLIRWFHPKK 391

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G IS   F+   EE   I  ++L++L+ +  +    R Q++   + +  N++  D  D  
Sbjct: 392 GFISPGVFIPALEESGHISELDLYVLDSV-NEFQKKRYQSDKITVPVSTNLSWMDFYDET 450

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           +   ++   +         ++  +E+            L  LR+ GI L LDDFG+  S 
Sbjct: 451 IMNWLEKKCADASMPSGLCRMEITETSYAAIEADRNATLEALREAGILLLLDDFGSGYSS 510

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
              L    FD +K + S +       K  +I+R II MA  ++  IIA+    +  ++ L
Sbjct: 511 FGMLQNYNFDIMKIDMSFVRQIETNTKTRSIIRFIIEMAHTMDIKIIAEGAETKEQVEFL 570

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
              GCDYIQ  +   P+     +KLL  
Sbjct: 571 RDNGCDYIQGYYFYKPMPEEEFVKLLDA 598


>gi|261251442|ref|ZP_05944016.1| GGDEF family protein [Vibrio orientalis CIP 102891]
 gi|260938315|gb|EEX94303.1| GGDEF family protein [Vibrio orientalis CIP 102891]
          Length = 616

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/447 (21%), Positives = 197/447 (44%), Gaps = 23/447 (5%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            ++ +      DNLTG+ NR    D++  +       +    T+  IDID +K IND+ G
Sbjct: 175 LVDQLSYEVSHDNLTGLLNRSYLSDKIERL----NEMNIDSFTLAYIDIDNFKSINDLYG 230

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD ++  +   I   +K   +  R++G+ F  I +S +           +   +   
Sbjct: 231 NYIGDQIIKFVANTIKLSIKDKHLAFRIAGDEFAFITLSGDPFE----ICHTIINKLEKG 286

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                  I  + SIG A      +T+ +++ NA LA+   K     +V+ +         
Sbjct: 287 YQDPAHNIKFSVSIGLAKSAGLNVTADQIILNASLALKDCKQSRHINVQCYDTHLSAQYY 346

Query: 705 VM------IKEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                   ++ +L    + + E+Y+V  PI+    ++    E L +W     G IS  EF
Sbjct: 347 RRALIIDALRSELAKETISDGEIYVVAQPIVERNKKQWNYYEILARWHSKALGAISPLEF 406

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQA 816
           +  AE+  +I      ++E   +      +      I + +N ++ +L +     + +  
Sbjct: 407 IEAAEQSGLIVEFGERIVELACK-AKVALENGLGHKIKLGLNCSAHELNNSERYLQHLID 465

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            I +  ++P    +  +E+V++   +  + +L +LR +G ++ LDDFGT  S L+Y+   
Sbjct: 466 TIQRYNFTPEEFTIELTETVLLSQTDEVKKILTKLRLLGFTVALDDFGTGYSSLNYIHSY 525

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + + +      E    ++  I+ +AK +E  +IA+ +  +  +++L  MGC+ 
Sbjct: 526 PIDCIKIDSTFINNMLSNETAERVVWLIVQLAKQLEVKLIAEGVENQEALEKLYAMGCNL 585

Query: 935 IQDSHVASPLGFNSIL----KLLKERF 957
           IQ  + + P     ++    + L+++ 
Sbjct: 586 IQGYYFSKPETPEQLISHSYERLEQQQ 612


>gi|212636406|ref|YP_002312931.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212557890|gb|ACJ30344.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 495

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/439 (25%), Positives = 209/439 (47%), Gaps = 15/439 (3%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             + + E    L+  L  A  D LTG+ NR S   +L +++         + +++++DI 
Sbjct: 59  SLSQVEEMVSQLKQQLHQAGFDKLTGLSNRLSMKQKLASMM------PLKQGSLVLLDIY 112

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           +++ +ND+ G + GD++L  +  RI   +     +AR++ + F I         ++  F 
Sbjct: 113 RFRYVNDLFGFSFGDELLKQIANRIEVDVHSSSAIARMNEDEFLIYFPDGITETELDTF- 171

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
               + +  P ++ E  ITV   +G           S ML+  +LA+  AK         
Sbjct: 172 ---IEYLQQPYSVFESPITVRVQVGHLGLERFHGDISTMLRRLDLALKKAKQLDRTIAHY 228

Query: 695 FRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      V I   L  A+++ ELY+VY P           +EAL++W H   GNIS
Sbjct: 229 ELGDDAVQLREVSIINSLVKALQDGELYMVYQPKQNFQPLGCNQVEALMRWQHKTLGNIS 288

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            +EF+ +AE   MI  I+ ++L+++      WR+      + + +N++++DL +  L + 
Sbjct: 289 PAEFIPLAEYAGMIDLISQWVLDQVVIQQAKWRELGLE--LQVAVNLSTQDLKNQALIQE 346

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A + K     + + +  +ES +M + + + L + RLR IG+ + +DDFGT  S L+YL
Sbjct: 347 IEARLFKYQLPANALSIELTESKLMEDIDGAVLAINRLRSIGVDIAIDDFGTGHSSLAYL 406

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            Y+P D VK + + + G     +   I+ + I +AK +   +  + +  E+  + + +MG
Sbjct: 407 KYLPVDEVKIDQAFVEGLETDPQAKHIMDTSIRLAKGLGFKVTVEGVETEVVKQIIVQMG 466

Query: 932 CDYIQDSHVASPLGFNSIL 950
            D IQ    A PL    + 
Sbjct: 467 VDKIQGDVFAKPLTPAELE 485


>gi|225377150|ref|ZP_03754371.1| hypothetical protein ROSEINA2194_02796 [Roseburia inulinivorans DSM
           16841]
 gi|225211055|gb|EEG93409.1| hypothetical protein ROSEINA2194_02796 [Roseburia inulinivorans DSM
           16841]
          Length = 867

 Score =  351 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 192/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q +  + +   A  D LTGI N+  F      +L++  T+D      + IDI+K++ IN 
Sbjct: 142 QMRVDDELKYRAEYDVLTGILNKSKFFYNTRNMLNIFGTED---FVFIRIDIEKFQLINS 198

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDIL--ARLSGNRFGIILISENNSLKIADFAIAMRK 639
             G+  GD++L  +   +  + K    +   R+  + F +    EN             +
Sbjct: 199 FFGMDEGDNLLKYMADYLQNVEKEYRYITYGRIEADIFAVCFSYENEKEITDFVKKFTNQ 258

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
               P++       +T   G     +  ++ +EM   A LA  + K     +   +    
Sbjct: 259 MEKYPLDFD-----ITPFFGIYLVKNRDLSINEMYDKANLASKNCKGNYIQNYFFYTKEM 313

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I  ++  A++N    L   P   L    I G E L++W       IS  EF
Sbjct: 314 SEEIIKEQRIINNMKNALKNEGFVLYLQPKYELQRNSIAGAEVLVRWITADGRMISPGEF 373

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E    I  ++ ++ E+  + +  WRD+       + +NI+   L + ++ + +  L
Sbjct: 374 IPVFERNGFILKLDQYVWEKTCQLLAGWRDEGRKI-FPVSVNISRVSLYNPKIVDVICGL 432

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K    P  ++L  +ES   GNP+  + ++ +L+K G S+ +DDFG+  S L+ L  I 
Sbjct: 433 TEKYNIPPEWLQLELTESAYTGNPKAIKEMMEQLQKKGFSILMDDFGSGYSSLNVLKDIA 492

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   + GS +   +  IL S++ MAK +   ++A+    +  +  L  +GC+Y+
Sbjct: 493 VDVLKIDMKFLDGSGDDGRSENILASVVRMAKWLNMPVVAEGAERKEQVSFLHSIGCEYV 552

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  + A P+      KLL E+
Sbjct: 553 QGFYFARPMPVKEYEKLLYEQ 573


>gi|257413263|ref|ZP_04742516.2| putative diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor
           [Roseburia intestinalis L1-82]
 gi|257204110|gb|EEV02395.1| putative diguanylate cyclaSe/phosphodiesterase with PAS/PAC sensor
           [Roseburia intestinalis L1-82]
          Length = 597

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/573 (19%), Positives = 213/573 (37%), Gaps = 50/573 (8%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++ +D+ +D    +        L   +     +    +++  D+          +  
Sbjct: 25  DDYLYVFDLQKDCYKISKHATERFLLPGDNFDDAAKAHHTFVYSEDQSRLDDEFRRIMSG 84

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                   +R      +  W+  R R +++++G     +G  N+I +++K+         
Sbjct: 85  EIVFHNMHYRWLDRAGKPVWINCRGRVLNDADGKPHFLVGCINEIGQKQKA--------- 135

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DN++G+    S    +         D       + I ID ++ IN   G+  GD +L S
Sbjct: 136 -DNVSGLLGESSLSAYVEQF-----EDGLPDGFFLRIGIDDFRDINGDFGMEYGDYILKS 189

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               I E +K    L R+  + F ++  S  +     +    +RKS+   I     +   
Sbjct: 190 TADCIAENIKPSQRLYRILADEFMVVDFSGGDMEAATELYKNIRKSLDTFIEENGYKSVF 249

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
           T S G      +  T   ++K +E A+  AK +G N    +    +        I   L 
Sbjct: 250 TISAGAVDTAKTSGTYENIMKLSEYALNTAKEQGKNRCYIYMQEDYDVFLRKKQITRQLH 309

Query: 713 LAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKW--------------------- 749
            AV +        Y PI+      +VG EAL+++  P+                      
Sbjct: 310 HAVNHGFEGFETYYQPIVDTKTRRLVGAEALMRFSMPERCEDGETKKEAVCVGEDGHDAD 369

Query: 750 -----GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  IS  EF+ + EE  +I     +ML +       W+    +P   I IN++   
Sbjct: 370 EKVHWERISPVEFIPLLEETGLIIPAGKWMLHQAISTCSRWQK--YIPNFRININLSYVQ 427

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           ++ + +   +   +      PS + +  +ES  +      + L   L+K G+ + LDDFG
Sbjct: 428 VMKSRVLTEILTALRLYGLEPSAVGIELTESGYLDTNTHFQKLWDGLKKNGVLVILDDFG 487

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L  LG +  + +K + S      + +    ++  II M   ++ TI  + I  E 
Sbjct: 488 TGYSNLHCLGDLRPNYIKIDRSFTLKALNNQYEHDLMTQIITMTHKLDLTICVEGIETED 547

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
           +  +++ +  DYIQ      P         L+K
Sbjct: 548 EFAKISELDPDYIQGFLFGKPQPAEEFYENLIK 580


>gi|254227608|ref|ZP_04921039.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262395656|ref|YP_003287509.1| hypothetical protein VEA_000356 [Vibrio sp. Ex25]
 gi|151939650|gb|EDN58477.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262339250|gb|ACY53044.1| hypothetical protein VEA_000356 [Vibrio sp. Ex25]
          Length = 882

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 108/585 (18%), Positives = 233/585 (39%), Gaps = 20/585 (3%)

Query: 380 ILIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           + +   ++Q +      +Q  +    E+       S   +    I R  V        +L
Sbjct: 307 LELATKLVQKLSENTSLTQLQLKDSMEKFGALYHSSSLGMLIV-IDRKIVDVNQRALDLL 365

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
             +   +     + L     +D      +       + G+ Q+E +V  ++ +    +I 
Sbjct: 366 SYSKSQLIDRPLDALCP-SEDDECRVDAMFREL---KNGKTQFEAQVLDSNAEEIDCLIE 421

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              + +     L  +    D+ E K+  E I      D ++G  NR   L+ L  +++  
Sbjct: 422 ATLIQHHGQSALMML--LQDMRETKQQAEMIQKLTDFDPVSGFCNRPVILNALHELVETR 479

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                   + + I+    K+I  V G  + D+V+  +   I E L     + R+S + F 
Sbjct: 480 PNH----FSFVYINSKTLKQIAGVYGHLIFDEVIQYIASAIREQLGA-FQIGRISEHEFI 534

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++    +  K  D    +   ++  + L    +++ +         +  +   +L  A 
Sbjct: 535 VLIPDIEHHQKAIDATNRLLNHLSHKVQLSGIMMSLDSKAVMMDLNITHQSVEHLLLAAR 594

Query: 679 LAMYHAKHRGGNHV--ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
            +   AK R  + V      +S      ++I  DL  A+    +   + PI+     E++
Sbjct: 595 FSSQSAKGRHSHEVLVIDEELSEQAETSMVINRDLENAIRQDAIKPFFQPIVDAKTTEVI 654

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPP 793
             EAL +W HP  G IS   F+ +AE+  +I  +   +L++    I      R    +  
Sbjct: 655 SFEALARWQHPTLGMISPEVFIPMAEQGKLIVELGESILKQSCEFISRLNGVRHAQGLSM 714

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N++++    + L   ++ ++++   S  ++ L  +ES++MG    S   +  +++
Sbjct: 715 LSVHVNLSAQHFYHSGLMSYLKKVMAQYNLSAGQLVLEITESMLMGGEIESIQSIQDIKR 774

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIET 911
           +G+ L LDDFGT  +  S +   P D VK + S +        A  ++R+I  M++ +  
Sbjct: 775 LGVGLALDDFGTGYASFSSVCNFPLDIVKLDKSYIDEIETNDRAKTLVRNIANMSQELGL 834

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           TI+A+ +     +++L     D +Q  +   P+     L      
Sbjct: 835 TIVAEGVETASQVRKLKVWNIDELQGFYFHKPMSAEQALVQFSRH 879


>gi|110635931|ref|YP_676139.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium sp. BNC1]
 gi|110286915|gb|ABG64974.1| diguanylate cyclase/phosphodiesterase [Chelativorans sp. BNC1]
          Length = 647

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 210/436 (48%), Gaps = 14/436 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +  ++ +D L+G+ NR+     L   ++  A  D    T M+ID+D +K +N
Sbjct: 210 EARQIAAEMEQSSREDPLSGLLNRRG----LEHAIEGLAETDGPFVT-MLIDLDGFKSVN 264

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G  +GDD+LV +  R+GE      IL+R+ G+ F ++             A+ +  +
Sbjct: 265 DTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDEFVLLYPERAAPHPPGQLALDLIAA 324

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P  L+   + + A IG   + S K + +EML  A++A+Y AK RG N    F  +  
Sbjct: 325 IASPYFLVA-SVRIGACIGI--YRSQKPSLTEMLLRADIALYAAKGRGRNEFCEFDENLQ 381

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I+ DL +A+E  EL + + PI+ L   EIVG EAL++W HP  G IS  E +
Sbjct: 382 QELERRQCIERDLIIAIEQGELGIWFQPIVTLKTAEIVGFEALLRWRHPTHGEISPPEIV 441

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             A E  ++  +   +       ++    +A    I + +N + ++L ++ + E +   +
Sbjct: 442 DAARETGLLFQLTETVFRNCC-VMMELLKKAGRSDIRVAMNFSPRELENSSVDEMIMTGL 500

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++     S  ++  +E   +    R    LGRL   GIS+ LDDFGT  S L+ L  I  
Sbjct: 501 TERDLPVSMFEIEITEEAALDRY-RVHERLGRLSGFGISIALDDFGTGFSTLASLKDIRI 559

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK +   + G   +     +++++I + +  +  ++A+ +  E D + L  +GC   Q
Sbjct: 560 RKVKIDKEFICGIAKSRDDQLLVKAVIDLGRAFDIEVMAEGVETEEDRRVLQVLGCCTAQ 619

Query: 937 DSHVASPLGFNSILKL 952
               A  L  N  +++
Sbjct: 620 GFLFARALPINEAVEM 635


>gi|223985336|ref|ZP_03635408.1| hypothetical protein HOLDEFILI_02714 [Holdemania filiformis DSM
           12042]
 gi|223962691|gb|EEF67131.1| hypothetical protein HOLDEFILI_02714 [Holdemania filiformis DSM
           12042]
          Length = 645

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 186/431 (43%), Gaps = 11/431 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR  F      ++ LS  ++     VMVI +  +K+IND  G   GD  L  +
Sbjct: 221 DPLTGLGNRVEF----QKMISLSMQNNRSLFLVMVISLRDFKQINDHFGQRTGDHFLKQI 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +  +      L R SG+ F +++ +     ++      +      P  +      + 
Sbjct: 277 ASTLKTMAAPY-PLYRFSGDEFALLIRNRT-PKEMEKLEQDILDRFNKPFEIDGYSYRLH 334

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLA 714
           A IG A++ +S  +   ++   E A+  AK          +       R   I E L   
Sbjct: 335 AVIGLAAYPNSAESLEGLINGLEYAVNQAKLHHWKLCYCDQTMLEGMRRRTEIIEILKQK 394

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++     +VY PI+ +    I  +E+L++      G +S  EF+ IAEE  +I  +   +
Sbjct: 395 LQEQAFVMVYQPILEVKTGRISAVESLMRIPESPMGPLSPGEFIPIAEETGLIIPMTWQI 454

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +I   I+  ++Q    P  + +N ++  L+  EL E +   + +    P +I +  +E
Sbjct: 455 LRQICTMIVRLQEQGVTLPA-VHVNFSAVQLVQPELAETVLQTLRECRTDPEQIIIEITE 513

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGST 892
           + +  NPE +      + + G+ + +DDFGT  S +  + ++P  TVK + SL+      
Sbjct: 514 TALAENPEETIRFARTMMEHGVKIEMDDFGTGYSNIDSVMHMPLSTVKLDRSLVVSAVEN 573

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +   +   +I +   +   ++A+ +      + +   G D IQ  + + PL    +++ 
Sbjct: 574 PRSATMTGYLIRVFHELGYEVLAEGVETIEQDQFVRAEGVDLIQGFYYSRPLAETQLVEF 633

Query: 953 LKERFPLVKNT 963
           L   FP  + +
Sbjct: 634 LA-HFPDQQPS 643


>gi|152964205|ref|YP_001359989.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358722|gb|ABS01725.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 764

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 95/436 (21%), Positives = 183/436 (41%), Gaps = 29/436 (6%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT + NR+               D  +  ++++ID+D++K++ND  G  VGD
Sbjct: 303 EHLAEHDPLTDLANRRGLER------AYDERDPGVPHSLLLIDLDEFKQVNDTHGHDVGD 356

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  +  R+        ++ARL G+ F +++     +      A  +   +  P+ +  
Sbjct: 357 ALLREVRDRLTGAAAPSGLVARLGGDEFVVLVP----TADAEAVAQRVLNHLEAPVVVDH 412

Query: 650 REITVTASIGFASWTSSKITSSEMLK-------NAELAMYHAKHRGGNHVESFRVSSFRS 702
             + V AS+G A       +    L        +A++AMY AK  GG  V  F      +
Sbjct: 413 LVLRVGASVGLA----DDESPDGGLLPLAGLLTHADVAMYAAKGAGGGRVAPFHPDLRSA 468

Query: 703 DRVM--IKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +  ++       A E   L + Y P++ L     VG EAL++W HP  G +S  
Sbjct: 469 VAHRYTLGGEIRQLLAGRAPEVRHLEIHYQPLVDLRSGRAVGAEALVRWRHPLRGLLSPG 528

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +  +  +   ++  +L+ +   +  WRDQ     + + +N+    L + +L   + 
Sbjct: 529 EFLELVNDNDLDSTLDTVVLDDVLDQVARWRDQGRAV-LPVSVNLTPDSLREEDLAARVL 587

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A +++       + L  +E   +     +   LG L + G+ + LDD+G   + L YL  
Sbjct: 588 ASLARAGVPAPLLHLEITEHERLHEDGPASRTLGLLHEAGVHVHLDDYGAGWTSLDYLRR 647

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            P   +K + S+++  T     ++  +  MA  ++  ++A+ +        L  +G  Y 
Sbjct: 648 FPVRLLKLDRSVVSTVTGDGAPLVAGVQAMAAALDLDVLAEGVETPGQRDRLLELGIRYG 707

Query: 936 QDSHVASPLGFNSILK 951
           Q    + PL      +
Sbjct: 708 QGYLFSRPLPAAEYAE 723


>gi|28900959|ref|NP_800614.1| hypothetical protein VPA1104 [Vibrio parahaemolyticus RIMD 2210633]
 gi|308094979|ref|ZP_05892168.2| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308095020|ref|ZP_05902983.2| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308126001|ref|ZP_05778631.2| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|28809405|dbj|BAC62447.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086378|gb|EFO36073.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308092559|gb|EFO42254.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308114782|gb|EFO52322.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 907

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/569 (19%), Positives = 225/569 (39%), Gaps = 29/569 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           T      +    E+       S   +    I R+ V        +L      +       
Sbjct: 346 TSMTQLQLKDSMEKFGALYHSSSLGMLIV-IEREIVDANHRALELLSYKKSDLLEQS--- 401

Query: 453 LPYIHI--NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           L  +     D      +       R    Q+E ++  +  +    +I    +   NG   
Sbjct: 402 LDTLCPTTADECRVDAMYRELQHGRN---QFEAQMLDSHGETIDCLIEATLIQ-HNGHTA 457

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  D++E K+  E I      D ++G  NR   L  L  ++           + + 
Sbjct: 458 LML-LLQDLSENKQQAEMIQKLTDFDPVSGFCNRPVILGALEELVK----HQPNHFSFIY 512

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           I     K+I +V G  + D+ +  ++  + + L     + R+S + F +IL + +     
Sbjct: 513 ITSKSLKQIAEVYGHLIFDEAIQYISTLLRDHLGTH-QIGRISEHEFIVILPNASGHSDA 571

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A  +   ++  I L    +++ +         +  +   +L    +A Y A+   G 
Sbjct: 572 LEAANRLLNQLSYKIELSGIMLSLDSKAVMVDPKITHQSLEHLLL---VARYSAQSMSGR 628

Query: 691 HVESF-----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           H+         +S      ++I  DL +A+    +   + PI+     EI+G EAL +W 
Sbjct: 629 HMHEVLVADGELSEQAETSMIIHRDLEVAIRQDNIIPYFQPIVNAKSGEIIGFEALARWP 688

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIFILINIAS 802
           HP  G IS   F+ +AE+  +I  +   +L +    I      R    +PP+ + +N+++
Sbjct: 689 HPTLGIISPLIFIPLAEQGKLIVELGESILNQSCDFIGKLNTKRHSQGLPPLTVHVNLSA 748

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    + L   +Q++I +   S   + L  +ES++MG    S   +  ++++G+ L LDD
Sbjct: 749 QHFYHSRLISFLQSMIEEHNISAGHLVLEITESMLMGGETESIHCINEIKQLGVQLALDD 808

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  +  S +   P D VK + S +        A  ++R+I  M++ +  TI+A+ +  
Sbjct: 809 FGTGYASFSSVCNFPLDIVKLDKSYVDEIETNDRAKTLVRNIANMSQELGLTIVAEGVET 868

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +++L     D +Q  +   P+     
Sbjct: 869 ASQVRKLKVWNIDELQGFYFYKPMTREDA 897


>gi|209886616|ref|YP_002290473.1| ggdef domain [Oligotropha carboxidovorans OM5]
 gi|209874812|gb|ACI94608.1| ggdef domain [Oligotropha carboxidovorans OM5]
          Length = 649

 Score =  351 bits (902), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 102/439 (23%), Positives = 192/439 (43%), Gaps = 10/439 (2%)

Query: 519 ITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +TEQ K S E +   A  D LTG+PNR    + +  ++  +  DD+ +     +D+D +K
Sbjct: 194 LTEQLKISQEALRFRANFDALTGLPNRTHIQELVDDLIRTA--DDDRKVAFAFLDLDDFK 251

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++ND  G A+GD++L  + +R+   ++  DI  R+SG+ F IIL   +     +     +
Sbjct: 252 QVNDHHGHAIGDELLRQIAKRVKSEIRSTDIFGRISGDEFVIILNPVDQRSDASALISRV 311

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R  +  P  +    I  +ASIG A +         + ++A++AMY AK      V  F  
Sbjct: 312 RSRLKRPFRIEGVGIKTSASIGVALYPDHGRDYDTLRRHADMAMYRAKSSSKGGVAFFNR 371

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +     ++++ ++  +  A+ N E        +      IVG EAL +W        +  
Sbjct: 372 TLGRRATEKLSLERCIRGALSNREFRCALQQKVDFRTRTIVGFEALSRWVDQSGAVHAPG 431

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +A EL ++  I   +++ + + +     +         INI++   +       + 
Sbjct: 432 EFLPLASELGVLDGITHLIVDDLIQHLPELDAKFG-LATKYSINISAAQSMKMPFMLKLA 490

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I  T     R+ L  +E            +L  LR+ G+S+++DDFGT  S L+ L  
Sbjct: 491 QRIYDTG-QAGRVILELTEESFAAIGPFQTHVLPMLREAGVSISIDDFGTGYSSLAKLAD 549

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GC 932
           +  D +K + SL++      +  +ILR+I  +   +  +++A+ I    +   L      
Sbjct: 550 LTVDELKIDRSLVSSIHQRPRNQSILRAIESLGSALSVSVVAEGIETLEEQDYLINQTRL 609

Query: 933 DYIQDSHVASPLGFNSILK 951
              Q      P     ++ 
Sbjct: 610 RLGQGYLFHKPEFIADLIA 628


>gi|118466529|ref|YP_880652.1| cyclic diguanylate phosphodiesterase domain-containing protein
            [Mycobacterium avium 104]
 gi|118167816|gb|ABK68713.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
            [Mycobacterium avium 104]
          Length = 1304

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/459 (24%), Positives = 214/459 (46%), Gaps = 18/459 (3%)

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-------TDDN 563
            R+     D++     L     +A  D LT +PNR+  +  L  +   ++       +  N
Sbjct: 846  RFSLTFRDVS----LLHSHDRHAMTDELTALPNRRQLVTALQGLPASASPGAGSMPSRAN 901

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
             R  ++++ +  + +I + +G   GD++L  +  R+   ++  D+LAR+  ++F ++L  
Sbjct: 902  PRRALLLLSLSDFHEITESIGRQFGDELLCHIANRLAGSVRRDDLLARVGDDQFAVLLAD 961

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              N    +  A  + ++++ PI L    + V   I  A          E+L  AE A+ H
Sbjct: 962  GANLTAASAQAGRLLEALSEPIALDPITVQVDGRIAIALCPDHCDHPRELLSRAETALAH 1021

Query: 684  AKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  R    V      + R +   + E+L  A  +  EL L Y P I   D  I  +EA+
Sbjct: 1022 AKSARSKIAVYDSAFEAHRDNDTNLIEELRTALFDTDELKLHYQPKIDGRDGSIHSVEAV 1081

Query: 742  IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            ++W HP  G +   EF+ +AE   +++ I+   L    + + SWR++     + + +N++
Sbjct: 1082 LRWQHPTRGTLLPEEFLPVAERAGLMRKISNRTLSMALQQVRSWREEGLR--LTVAVNLS 1139

Query: 802  SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + +LLD EL   ++ L++        + L  +ES ++ +  RSR  +  L+++GI +++D
Sbjct: 1140 TTNLLDIELVGTVERLLANYDLPADALILEITESALV-DSVRSRNTVTALQRLGIRISID 1198

Query: 862  DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIY 919
            D+GT  S L+ L  +  D +K +   +          AI+RS + +A N+   ++A+ + 
Sbjct: 1199 DYGTGWSSLARLQEVSVDELKLDRIFVARLAHDARSVAIVRSTVALADNLGADLVAEGVE 1258

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             E  +  L R GC+  Q      PL  + +   +    P
Sbjct: 1259 NEDTLDALRRYGCNITQGFVHTPPLPPDELRAWIASHAP 1297



 Score =  160 bits (406), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 4/179 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +  L  +   AF+DNLTG+ NR  F+ RL   +     D      V+ +D+D +K +N
Sbjct: 325 DNQNLLSEVAREAFRDNLTGLANRALFVHRLEQAVARRHPD-GTPIAVLCLDLDNFKAVN 383

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++LV +  R+   L     +ARL G+ F  ++ +  +  + A  A  + ++
Sbjct: 384 DALGHPAGDELLVRVAERLTAALGDSGTIARLGGDEFAAVIEASVDESQAA--AHRILEA 441

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               I +    ITV  SIGF   T +   T  ++L++A+LAMY AK  GG  + SF   
Sbjct: 442 FTGAILIDGIPITVRPSIGFTVCTGASTCTVDQLLRHADLAMYAAKREGGQCIRSFMPD 500


>gi|293604646|ref|ZP_06687048.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816977|gb|EFF76056.1| sensory box/GGDEF family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 481

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 188/425 (44%), Gaps = 15/425 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ ++Q    R    L         R    ++  ++Y +I+ +L       +LV +
Sbjct: 59  DELTGVLSQQELHRRARLWLSQ-KEGPARRGAFFLVSFEQYAEISAMLRAGEDQALLVLV 117

Query: 596 TRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             R+  + +    ++AR   + F I +    +    A  +  +   ++ P  L  R +  
Sbjct: 118 ADRLSLITRTLGGMVARSGTDSFTICVPEV-DEEGAAQVSAKLLADLSEPYALGGRSLIA 176

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
              +G A +     +  E+ +  ++AM   K RGG     F     +   D+  ++ DL 
Sbjct: 177 VFRVGAALYPEHGRSVEELQRCVQVAMVPMKERGGPGWNLFDFRLLARHRDQQGLENDLR 236

Query: 713 LA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           LA       +  L Y P+       + G EAL++W HP  G++S +  + +AE   +I  
Sbjct: 237 LALTTPAMEQFELFYQPVCDSGSGVVQGCEALLRWHHPTLGSVSPAVTIELAERSGLIVP 296

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++LER       W      P   + +N++ K + ++ L + +  +++ T  SP ++ 
Sbjct: 297 LGAWILERACSQAALWP-----PAWRVHVNLSVKQMNEDGLVQLVSDVLAATQLSPRKLV 351

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES+ + + ER   +L  LR  GI + LDDFG   S L++L ++P D VK + S ++
Sbjct: 352 LEITESIFILHYERHVKMLNTLRAQGIGIALDDFGCGYSSLNHLRHLPIDWVKIDRSFIS 411

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     ++ ++  + + +   ++A+ +  E   + L  +GC  +Q   +  P   +
Sbjct: 412 ALESDAGSREVVSALFGLCQAMRLPVVAEGVETEGQREILKSLGCRVMQGFLLGRPAPAS 471

Query: 948 SILKL 952
            I  L
Sbjct: 472 EIQAL 476


>gi|170727843|ref|YP_001761869.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169813190|gb|ACA87774.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 504

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 110/418 (26%), Positives = 204/418 (48%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR     R  T++         + T+++IDI +++ +ND+ G +VGD +L  L
Sbjct: 89  DKLTGLANRLGLKSRFLTLM------PITQGTLVLIDIYQFRFVNDLFGFSVGDKLLQIL 142

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           + R+         LAR++ + F +      +  K+      +R+ + MP N+ +  ITV 
Sbjct: 143 SERLQGEGNNVSFLARMNEDEFLLYFEQAQDEAKLLA----IREKLQMPFNIQDIPITVQ 198

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFRSDRVMIKEDLCLA 714
             +G+          S++L+  +LA+  AK         S      +  ++ I   L  A
Sbjct: 199 IQMGYLDLAQHHTYVSQLLRRLDLALIKAKEDKQLFASYSEGDDLSQQRQLGIINRLPKA 258

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   ELY+VY P + +++     +EALI+W+H   G +S +EF+ +AE   MI  ++ + 
Sbjct: 259 LARGELYMVYQPKLDVLNGGFSQVEALIRWEHEDLGMVSPAEFIPLAEYAGMIGLVSEWA 318

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      W     +  + + +N++SKD++ + LC+ +Q    K       + +  +E
Sbjct: 319 LDQVISQQYKWHQSGLL--LQVAVNLSSKDIISSTLCDDIQMKFDKYGLETKLLSIEITE 376

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M + E +   + +L+ IG+ + +DDFGT  S L+YL Y P D VK + + +      
Sbjct: 377 SKLMDDMEMAVETIEKLKAIGVDVAIDDFGTGHSSLAYLKYFPVDEVKIDKAFIDELMSD 436

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + A  I++S I +AK ++  +  + +  E     L  MG D IQ    A P+    + 
Sbjct: 437 KHAKHIMKSSIELAKGLDFKVTVEGVETEEVKSLLVEMGVDKIQGDLFAKPMSALELE 494


>gi|83309828|ref|YP_420092.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82944669|dbj|BAE49533.1| Predicted signal transduction protein [Magnetospirillum magneticum
           AMB-1]
          Length = 679

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 100/429 (23%), Positives = 179/429 (41%), Gaps = 9/429 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   + +D LT + NR+ F + L   +D +    +    V  ID+D +K IND  
Sbjct: 257 EYQHRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRAQRHGHP-FCVAQIDLDDFKNINDTF 315

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD VL  L   +   ++  D++AR+  + F ++L        +A      +     
Sbjct: 316 GHPIGDLVLKELASVLYREVRRTDVVARVGADEFAVLLPETTMEEGVAAAEKLRQAVADC 375

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRS 702
            + L    + +TASIG   +  +   + ++   A++A+Y AK  G N V           
Sbjct: 376 QLGLPVGGVRITASIGLVGYPDNADDAQKLAIAADVAIYKAKRSGKNQVAVIGEGEDATV 435

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                 E +  A+    L   + PI+   D  +   E L +        + + +F+  AE
Sbjct: 436 AIFSQGEMVRSALAEGRLVPFFQPIVAAEDGSVAAYEVLARVVDGD-QAVCAGDFIESAE 494

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           EL +   I+  + +     +        +    I +N+++K L D E    +   +    
Sbjct: 495 ELGLAGEIDAAVFDGALEAMA----AGKLGDAKIFVNLSAKSLTDRERMMAIPERLHAAG 550

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            SPSR+ L  +E   + +      ++  LR  G+   LDDFG+  S   YL YI  D VK
Sbjct: 551 VSPSRVVLEITEREALPHFGDIVAMINELRSTGLGFALDDFGSGFSSFLYLKYITVDYVK 610

Query: 883 FNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             GS +    + E+   ++  I  MA+      IA+ +  E  +  L +MG +  Q  H+
Sbjct: 611 IEGSFIRHVVTDERDRIMVEHIHSMARRFGMITIAEFVEDEDTMVLLRKMGINLCQGFHI 670

Query: 941 ASPLGFNSI 949
           A P   + +
Sbjct: 671 AVPKPIHKL 679


>gi|291534996|emb|CBL08108.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
 gi|291539558|emb|CBL12669.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 593

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/573 (19%), Positives = 213/573 (37%), Gaps = 50/573 (8%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++ +D+ +D    +        L   +     +    +++  D+          +  
Sbjct: 21  DDYLYVFDLQKDCYKISKHATERFLLPGDNFDDAAKAHHTFVYSEDQSRLDDEFRRIMSG 80

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                   +R      +  W+  R R +++++G     +G  N+I +++K+         
Sbjct: 81  EIVFHNMHYRWLDRAGKPVWINCRGRVLNDADGKPHFLVGCINEIGQKQKA--------- 131

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DN++G+    S    +         D       + I ID ++ IN   G+  GD +L S
Sbjct: 132 -DNVSGLLGESSLSAYVEQF-----EDGLPDGFFLRIGIDDFRDINGDFGMEYGDYILKS 185

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
               I E +K    L R+  + F ++  S  +     +    +RKS+   I     +   
Sbjct: 186 TADCIAENIKPSQRLYRILADEFMVVDFSGGDMEAATELYKNIRKSLDTFIEENGYKSVF 245

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
           T S G      +  T   ++K +E A+  AK +G N    +    +        I   L 
Sbjct: 246 TISAGAVDTAKTSGTYENIMKLSEYALNTAKDQGKNRCYIYMQEDYDVFLRKKQITRQLH 305

Query: 713 LAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKW--------------------- 749
            AV +        Y PI+      +VG EAL+++  P+                      
Sbjct: 306 HAVNHGFEGFETYYQPIVDTKTRRLVGAEALMRFSMPERCEDGETKKEAVCVGEDGHDAD 365

Query: 750 -----GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  IS  EF+ + EE  +I     +ML +       W+    +P   I IN++   
Sbjct: 366 EKVHWERISPVEFIPLLEETGLIIPAGKWMLHQAISTCSRWQK--YIPNFRININLSYVQ 423

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           ++ + +   +   +      PS + +  +ES  +      + L   L+K G+ + LDDFG
Sbjct: 424 VMKSRVLTEILTALRLYGLEPSAVGIELTESGYLDTNTHFQKLWDGLKKNGVLVILDDFG 483

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S L  LG +  + +K + S      + +    ++  II M   ++ TI  + I  E 
Sbjct: 484 TGYSNLHCLGDLRPNYIKIDRSFTLKALNNQYEHDLMTQIITMTHKLDLTICVEGIETED 543

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
           +  +++ +  DYIQ      P         L+K
Sbjct: 544 EFAKISELDPDYIQGFLFGKPQPAEEFYENLIK 576


>gi|241113710|ref|YP_002973545.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240861918|gb|ACS59584.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 604

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 196/441 (44%), Gaps = 13/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++ +       + D LTG+ NR  F   L   L  S         ++++DID  K +N
Sbjct: 158 DREERVMERQRLTYSDALTGLSNRARFNQLLAEELPRSRRAWG----ILLVDIDNLKLVN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD ++  +  R+       +   RL G+ F +I+  + N   +   A  +  +
Sbjct: 214 DTFGHAAGDALIQVVADRVATTAGTKNTF-RLGGDEFAVIVSGDKNLD-LKASATDILTA 271

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
           ++ P       +   A+IG A    ++    +  +NA++A+YHAK   RG        + 
Sbjct: 272 LSSPSTCDGHVVFPAATIGGALA-ETETNPDQTRQNADVALYHAKEHNRGRYVQHYPGLG 330

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  + R     D+ +A+++  +   Y PI+RL   EIVG EAL +   P    I+++ F 
Sbjct: 331 TALTRRFRAVRDVGVALKDDRIDAHYQPILRLDTREIVGFEALCRMTTPSGEIIAAAHFH 390

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              ++  +   +   ML R+A+DI SW  +       + IN+++ D     L + +  + 
Sbjct: 391 EATKDAHIAAELTERMLLRVAKDIRSWLARGLPLQ-HVGINLSAADFRGGNLQDRLCRIF 449

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +       I L  +ESV +G  +      +  LR  G+ + LDDFGT  + L++L  +P
Sbjct: 450 GEAEVPLKHIILEVTESVYLGQRDYVVADEIKALRSKGLRVALDDFGTGYASLTHLLTVP 509

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I+  +I +A  +   ++A+ I  E    +L+++GC   
Sbjct: 510 VDIIKIDKSFIDRMVPGDAGTFIVEGLIGIAHKLGIRVVAEGIETEPQAAQLSQLGCKLG 569

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    +  +        L++ 
Sbjct: 570 QGYLFSKAVDRTVAAAFLEQH 590


>gi|284054182|ref|ZP_06384392.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 488

 Score =  351 bits (901), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 112/347 (32%), Positives = 189/347 (54%), Gaps = 3/347 (0%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   AF+D+LT +PNR  FL+RL   +D+     N    V+++D D++K IN
Sbjct: 142 ELEIANSKLRDMAFRDDLTNLPNRALFLERLADGIDVKQEHHNYNFVVLLLDCDRFKMIN 201

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + LG +VGD +L+++++R+  LLK  D LARL G+ F I++    +  +    A  + +S
Sbjct: 202 ESLGHSVGDQLLIAISKRLKSLLKPEDTLARLGGDEFAIMVNKIEDMAEAKAMAQKVLES 261

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            + P  L  +E+ +  SIG +           ML++A+ AMY AK  G      F  S  
Sbjct: 262 FSHPFVLPNQEVFINVSIGISGSHLDYQKPEHMLRDADTAMYRAKDLGKGQYHIFDPSMH 321

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  +++ I+ DL  A+ N E  + Y PII L   +I G EAL++W HP+   I    F+
Sbjct: 322 HNVSEKLQIENDLRRAINNDEFLVYYQPIIHLTTGKIAGFEALVRWQHPQKQLIHPVLFI 381

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQAL 817
            IAEE  +I AI   +LE+  +   SW+  +     +FI +N++++   + +L + +Q L
Sbjct: 382 PIAEETGLINAIGNLVLEKACKQFRSWQKSKLINDSMFISVNVSARQFANMDLSQQIQQL 441

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +  T   P  +KL  +ES +M NP+ +  +L   +K  + L++DDFG
Sbjct: 442 LEVTQLDPHCLKLEITESAIMDNPKTAVAILEGFKKQNVRLSIDDFG 488


>gi|307721928|ref|YP_003893068.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sulfurimonas autotrophica DSM 16294]
 gi|306980021|gb|ADN10056.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Sulfurimonas autotrophica DSM 16294]
          Length = 1104

 Score =  351 bits (901), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 101/443 (22%), Positives = 191/443 (43%), Gaps = 15/443 (3%)

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                +    + D + G PN  + ++++         D      + +I+I  +  IN + G
Sbjct: 673  HERRLNYLTYTDIICGFPNANALVEKIK--------DYKKPFALAMINIRAFSSINLLYG 724

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
               G++VL  +   I ++L+  DI+  LSG+RF + + +      +      + K  A  
Sbjct: 725  FEFGNEVLCRVADIIKKILRKEDIVYHLSGDRFCVFI-NIEARDILDKIVKKIAKECAYN 783

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-SD 703
            I + +R I ++   G A +      SS++   A  A+ +A       V          ++
Sbjct: 784  IMVEQRHIPISCRFGMAKYPDDSNNSSQIKDLAMTALSYASRDKKETVFYEDKMKEMLNN 843

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                +  L  A+ +++    Y PI+    +++V  EALI+        IS    + +AEE
Sbjct: 844  HAETETRLIDAIAHNKFEFYYQPIVDAKTQKVVHCEALIRLKDENNKPISPEYMIHVAEE 903

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
            L +IK I   + + +A     W+ +     + + IN++S D+ D +        I K   
Sbjct: 904  LGLIKKITKIVTKNVAMQQKIWQQKGLH--VKVAINLSSYDIEDEDFSLFFAQTIVKYGL 961

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            +   I +  +E   + N E ++  L  ++++GI + +DDFG   S L  +  + FDT+K 
Sbjct: 962  NNKSIAVEITERTAVQNYEAAQKFLQHMKELGIPVEIDDFGVANSSLHQITEMEFDTLKI 1021

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + S +      EK   I+  I+  AK +  T +A+ +  +   + L   GCD IQ  + +
Sbjct: 1022 DKSFVDKILEDEKDREIVNVILQTAKILNVTTLAEGVETKEQYEWLKDKGCDMIQGYYFS 1081

Query: 942  SPLGFNSILK-LLKERFPLVKNT 963
             PL        +L  + PL   T
Sbjct: 1082 KPLCVKDFEAYMLSYKEPLDSAT 1104



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 10/129 (7%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           ++T +  I  + G     +      W  +I+  DR+   +         +G L++++R+ 
Sbjct: 468 QITVSNAIEKLTGFTRKEVESSPSWWQEHIYEPDREEVLSAQGELFQ--KGYLEHQYRLE 525

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D  + W+  R   + N +  +   +G  N+IT  K         A  D       R  
Sbjct: 526 CKDGSYIWIDNRAINL-NKDDMLQDILGFWNEITTLKLHEAANKAIAKID-------RHF 577

Query: 547 FLDRLTTIL 555
            +      +
Sbjct: 578 LIQNDEEEI 586


>gi|225388000|ref|ZP_03757724.1| hypothetical protein CLOSTASPAR_01733 [Clostridium asparagiforme
           DSM 15981]
 gi|225045941|gb|EEG56187.1| hypothetical protein CLOSTASPAR_01733 [Clostridium asparagiforme
           DSM 15981]
          Length = 752

 Score =  351 bits (901), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 207/518 (39%), Gaps = 43/518 (8%)

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFH----------WMIIRIRPMSNSNGDILRYIGIAND 518
           +    ++ G L+YE      D + +          W ++ I P      ++   + +A  
Sbjct: 235 EEIAAHKSGSLRYE----REDGRRYVYYQPLEVNQWYLLSIVPSWVVEENVNGMLSLAYT 290

Query: 519 I----------------TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           +                T +K+  E +   A  D +TG  +   F   +  IL  S    
Sbjct: 291 MMAACLGILALMAYQIWTIKKRYWEKVEDTALTDAVTGHASFAKFRLDVQEILSGSR--- 347

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    ++  ++  ++ IND+ G A GD +L  +   +   +   +  ARL+ +RF  +L 
Sbjct: 348 DTPYALVCFNVRMFQYINDLHGFAEGDRILRVIADYLSAHIGRQEACARLNADRFAALLS 407

Query: 623 SENNSL---KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
             +      ++ +    M +     +  +  ++ +TA  G            +ML  A+ 
Sbjct: 408 YRDKEELRGRVKNMIHGMEQLNRSQMEEMAYDVRMTA--GIYQIEDKAEVLDKMLDWAKA 465

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+         +   +             ++     A+   +  + Y P   +      G
Sbjct: 466 ALSRENMGAIENCGFYDTGIRERMVRRKELENHFEEAMSQGQFEVYYQPKYDVKGGRFYG 525

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+ P  G I    F+ + E   MI  ++ ++ E++ R I  W D+       + 
Sbjct: 526 AEALVRWNSPAEGMIPPGLFVPVFESNSMIIRLDEYIFEQVCRQIRQWLDRGFAVQ-PVS 584

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+   L      E    LI +    P  ++L  +E+V+  N E     L   R+ G+ 
Sbjct: 585 VNISRLHLYQKGFVERYLGLIRRWHVPPGLVELELTETVMFDNEELLGETLQGFRREGVP 644

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           + +DDFG+  S +  L  +P D +K +  L+  STE+     IL S+I +A+++   + A
Sbjct: 645 ILMDDFGSGYSSIQLLRSMPIDNLKIDKGLVDDSTERPKLQKILSSVIGLAQSLHIQVTA 704

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  +     L RM  DYIQ  + A P+      KL+
Sbjct: 705 EGVETKDQYDLLKRMNVDYIQGYYCAKPMPCGEYEKLV 742


>gi|222874257|gb|EEF11388.1| predicted protein [Populus trichocarpa]
          Length = 349

 Score =  351 bits (901), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 103/351 (29%), Positives = 169/351 (48%), Gaps = 4/351 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT +PNR  F +RL     + A   + R  V+ +D+D++K IND +G   GDD L 
Sbjct: 1   MHDPLTDLPNRTLFSERLKQA-IIRARRASRRVGVLFLDLDRFKMINDTMGHGTGDDALR 59

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   ++  D +ARL G+ F I++    +   +A  A  +   +  PI+   R + 
Sbjct: 60  VIAMRLKHAVRESDTVARLGGDEFTIVVEEIEDIRHVAHIAQVLLDVVGQPIDAAGRSVF 119

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDL 711
           VT SIG + +        ++L  A+ AMY AK  G N    F         + + ++ +L
Sbjct: 120 VTPSIGISIYPDDGTDQQQLLMQADRAMYEAKQEGKNTFRFFATQMTSSAMESMALECEL 179

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   E  L Y PI  L    IV +EAL++W HP  G +S   F+ +AEE  ++  I 
Sbjct: 180 RRALTRREFRLHYQPIYDLGSGRIVSVEALLRWQHPTRGLLSPGAFIDVAEESALVVPIG 239

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L    R   +W          + +N++++ +        +  ++S     P  ++L 
Sbjct: 240 AWVLREACRQGAAWLRSGFEFG-RMSVNLSARQIRHEHFLHDVSDVLSDAGMQPEHLQLE 298

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             ES+ M     + L+LG L + G+ L +DDFGT  S  +YL  +P DTVK
Sbjct: 299 LVESMAMTGNGVTELVLGELARRGVGLAIDDFGTGYSSFTYLQTLPVDTVK 349


>gi|317064268|ref|ZP_07928753.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689944|gb|EFS26779.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 755

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 174/434 (40%), Gaps = 11/434 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + K  + I   A+ D+LTG+ N   F      +L         +  V  +DI  +K IND
Sbjct: 320 RTKYEKEIEKIAYNDSLTGLMNFVKFKIEGNRLL---KDRPLKKFAVFYMDIRNFKMIND 376

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           V     GD ++  +   +        ++AR+S + F ++L    +   + +    + K +
Sbjct: 377 VFSYKTGDKIIQGIAEELRYSFNKESLVARVSADNFVVMLEY-QDKDVLEEELNDIIKKM 435

Query: 642 AMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +    + + E  +    G        K   + ML  A +A  HAK      +  +     
Sbjct: 436 SSNSYVRDMEYHLDIYGGVCCREDCEKNDVNTMLDRANMARKHAKDSKTKKLVFYNKIMG 495

Query: 701 RSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                    +L    A++N E  +   P   L   +  G EAL++W     G IS  EF+
Sbjct: 496 ELLIREQDMELRKEEALKNGEFIVFIQPKYSLESGKAEGGEALVRWKT-NEGYISPGEFI 554

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I +I+ +M E + +    W D+       I +N++ + L +    E      
Sbjct: 555 PLFEKNDFIVSIDKYMHEEVCKLQRKWLDRGLKV-FPISVNVSKRQLYNPNFAEEYIETK 613

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K     + ++L F+ES+     E    ++ +L K G   ++DDFG+  S L+ L  +  
Sbjct: 614 NKYDLPDNTVELEFTESIFFEKYEVISGIVKKLTKYGYICSIDDFGSGYSSLNLLKDVSL 673

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +          +    I+R++I MA  ++   +A+ +     ++ L  + CD +Q
Sbjct: 674 GVLKIDRLFFENLENNKRGDIIIRNVINMASELKMKTVAEGVETLEQLEFLKSVNCDMVQ 733

Query: 937 DSHVASPLGFNSIL 950
                 P+      
Sbjct: 734 GYIYDRPMPVEEFE 747


>gi|257470044|ref|ZP_05634136.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
          Length = 749

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 174/434 (40%), Gaps = 11/434 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + K  + I   A+ D+LTG+ N   F      +L         +  V  +DI  +K IND
Sbjct: 314 RTKYEKEIEKIAYNDSLTGLMNFVKFKIEGNRLL---KDRPLKKFAVFYMDIRNFKMIND 370

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           V     GD ++  +   +        ++AR+S + F ++L    +   + +    + K +
Sbjct: 371 VFSYKTGDKIIQGIAEELRYSFNKESLVARVSADNFVVMLEY-QDKDVLEEELNDIIKKM 429

Query: 642 AMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +    + + E  +    G        K   + ML  A +A  HAK      +  +     
Sbjct: 430 SSNSYVRDMEYHLDIYGGVCCREDCEKNDVNTMLDRANMARKHAKDSKTKKLVFYNKIMG 489

Query: 701 RSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                    +L    A++N E  +   P   L   +  G EAL++W     G IS  EF+
Sbjct: 490 ELLIREQDMELRKEEALKNGEFIVFIQPKYSLESGKAEGGEALVRWKT-NEGYISPGEFI 548

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I +I+ +M E + +    W D+       I +N++ + L +    E      
Sbjct: 549 PLFEKNDFIVSIDKYMHEEVCKLQRKWLDRGLKV-FPISVNVSKRQLYNPNFAEEYIETK 607

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K     + ++L F+ES+     E    ++ +L K G   ++DDFG+  S L+ L  +  
Sbjct: 608 NKYDLPDNTVELEFTESIFFEKYEVISGIVKKLTKYGYICSIDDFGSGYSSLNLLKDVSL 667

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +          +    I+R++I MA  ++   +A+ +     ++ L  + CD +Q
Sbjct: 668 GVLKIDRLFFENLENNKRGDIIIRNVINMASELKMKTVAEGVETLEQLEFLKSVNCDMVQ 727

Query: 937 DSHVASPLGFNSIL 950
                 P+      
Sbjct: 728 GYIYDRPMPVEEFE 741


>gi|95929318|ref|ZP_01312062.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134816|gb|EAT16471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 860

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 105/569 (18%), Positives = 209/569 (36%), Gaps = 33/569 (5%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +H+       Q    + E+    +  S  +V   D+      T      + G  +  M G
Sbjct: 311 RHIHRLDRNRQAHMHELEQYKKLLDLS-CMVSKGDLTGHITYTNESFQRVTGYTADEMLG 369

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              N     H +        L   +       +   +    +N+  +    I P+++ NG
Sbjct: 370 KPHNLFR--HPSTPKKVFKELWDTI-QAGMVWRGSSKNLGKNNKPFYTQQVIMPITDDNG 426

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +IL YI    DITE  +  E +      D +T + +R   L  +                
Sbjct: 427 NILEYIAARYDITELLEKREQLQLAFSTDTVTALGSRFKLLRDIER--------GPADQC 478

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENN 626
           + +ID+  +  +N + G   GD +L  +   +          L RL+ + F ++     N
Sbjct: 479 LALIDMVSFHGVNKLYGTETGDMILKYIGESLSLFYGGTKTTLYRLNADIFAVLSPRVEN 538

Query: 627 -SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            S  +  F     +      + +  EI +T ++G A           +L  A+ A+  AK
Sbjct: 539 FSSTMDAFLDQFSQKKFCLEDTMNTEIPITLTVGIACRQ------ENLLTCADSALKEAK 592

Query: 686 HRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            +    +   +  +   +        + +  A+    L   Y PII L   +I   E L+
Sbjct: 593 RQNLRLMIYNQDLADSDEYKQKMYWIDTVQQAMTEGRLVAYYQPIIDLSTGQICKFETLM 652

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        +    F+ + ++      +   M+E+                    IN   
Sbjct: 653 RLLDKDGTPVPPGLFLPVLKQTQFYAYMTHAMIEQACAFFK-------DKVCHFSINFTV 705

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DLL  E  + +     +      R+ L   E+  + N +++   +  L+++G  +++DD
Sbjct: 706 DDLLRKETVQLIVDTALRYDVI-DRLVLEVVETENIQNYDQALETIRYLKELGCQISIDD 764

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FG+  S  SYL  +  D +K +GSL+    +      ++ SI+  A   +  ++A+ I  
Sbjct: 765 FGSGYSNFSYLTQVSADVIKIDGSLVQAINQDERTRELISSIVQFAHRSDMKVVAEFIDS 824

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              ++ +  +GCD  Q  H + P+  + I
Sbjct: 825 AEILQSVKEIGCDMGQGYHFSPPVPASEI 853


>gi|255655669|ref|ZP_05401078.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296451671|ref|ZP_06893404.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878915|ref|ZP_06902915.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296259502|gb|EFH06364.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430187|gb|EFH16034.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 619

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 187/430 (43%), Gaps = 9/430 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++D LTG+   + F       + +     + +  V  ID + +K IND+ G   GD +L
Sbjct: 190 AYKDELTGVNTIEKFKLDANQNICM---HKDKKFAVFYIDFENFKYINDIFGYDYGDMIL 246

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-RE 651
                 +   +   +I AR   +RF  +    +    +    I   + I     +     
Sbjct: 247 KRYANLMMNDIGKYEIFAREIADRFVALRCYIDKEDLVVRQRIVDSELINTTNEIKNKHS 306

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           ITV + I      + K++   ++  A  A    K++ G +   +  S  +       IK 
Sbjct: 307 ITVVSGICCIEDVNEKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKS 366

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+E  E  +   P + L +++I   EAL++W  P  G IS + F+ + E+   I  
Sbjct: 367 RIHEAIEKREFIVYLQPKVNLHNQKINCAEALVRWLTPDKGIISPAIFIPVLEKNFFIAL 426

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++ ++ E + + I    D+   P + I +N++     + +  E    + +K     + I+
Sbjct: 427 VDKYVFEEVCKWIRKRLDEN-KPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIPKNTIE 485

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           + F+ESV   N      ++  L + G + +LDDFG   S LS L  +PFD +K +     
Sbjct: 486 IEFTESVAFENQNHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDALKLDSMFFK 545

Query: 890 -GSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +  I+ ++I+ M K +  T +A+ I  E  ++ L  +GCD +Q      P+   
Sbjct: 546 ASLDKDKEKIVIKNIVHMLKELNITTVAEGIEYEEQVEFLRDIGCDLVQGFVFYKPMPIL 605

Query: 948 SILKLLKERF 957
              ++L + F
Sbjct: 606 EFEEILDKEF 615


>gi|223983858|ref|ZP_03634022.1| hypothetical protein HOLDEFILI_01303 [Holdemania filiformis DSM
           12042]
 gi|223964182|gb|EEF68530.1| hypothetical protein HOLDEFILI_01303 [Holdemania filiformis DSM
           12042]
          Length = 721

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 192/453 (42%), Gaps = 13/453 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  + +  +   +++  E     AF D LT  PN   F       LD+     +   ++
Sbjct: 273 LILMLSLYRNWKHRRRLGE----IAFMDPLTRAPNDSGFRLLCRRQLDMPGLSPS---SI 325

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + I++  +K IN+      GD VL      + +     ++ AR+  + F +++       
Sbjct: 326 VFINLKHFKLINENYRSETGDIVLKIFMECLRQTCGQGELAARIEADHFALLVRG-QAYD 384

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHR 687
            +      ++  +   +   + + T+  + GF +  S       ML  A+ A + A K  
Sbjct: 385 GLLARLQRLQGQVKQALAAQQIDFTLAFNAGFYAIYSVSQDVQVMLGRAKTACWSAEKQE 444

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                   R+    +    +   L  A+ + +  +V  P +      + G EAL++W HP
Sbjct: 445 LLLCQYDQRLIDTLNQEHAMTAALPGALRDGQFMIVLQPKVDPAGGRVAGAEALVRWKHP 504

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G I   +F+ I E    I  ++ F+ E++   +  W++   + P+ I +N++     +
Sbjct: 505 EKGMIPPGQFIPILENSGQIVQLDEFVFEQVCALLKRWQED-GIAPLPISVNLSRHHFKN 563

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGT 865
                 ++++       P  I+L  +ES+       ER + ++ ++ + G + +LDDFG+
Sbjct: 564 RNFLGRLRSIAEHYGVDPGWIELEITESIFFDESSIERVKTIVHQIHQSGFTCSLDDFGS 623

Query: 866 KCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S L  L     D +K +          +   ++  I+ +AKN++ TI+A+ +      
Sbjct: 624 GYSSLGLLKEFEIDAIKLDRIFFPATLDPRSQVVIEGIVALAKNLKLTIVAEGVESGEQA 683

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             L R+GCD IQ  + + PL   +  +L  ++ 
Sbjct: 684 DFLRRIGCDLIQGYYYSPPLMPTAFAELRCKQN 716


>gi|297583189|ref|YP_003698969.1| extracellular sensor-containing diguanylate
           cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297141646|gb|ADH98403.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Bacillus selenitireducens MLS10]
          Length = 919

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 115/557 (20%), Positives = 229/557 (41%), Gaps = 27/557 (4%)

Query: 402 SDGERQSLA-VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +  R  LA +  +    +  D     V        ++           ++ L  +   D
Sbjct: 385 QNELRLMLAVLAETNQAFFIVDSDLHLVYQNQASDELVSHYEERKGWKPKSVLAIL---D 441

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            D FR  L   V      + +E  +   D       I +R +++ +     Y+GI  D++
Sbjct: 442 VDRFRNELIELVEA----ISWETSLLTRD-----YQISVRVITHKSKK--YYLGIIEDVS 490

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++ + ++ +      D++TG+ ++    D    +++      ++   ++  DID    I 
Sbjct: 491 DRNEIMQLLDNLQTYDDVTGVMHKDRASDEFAEMIEK---KPDVFACIIACDIDGLSTIF 547

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G A  +D+L+ L+ R+ E+    DI+ R S + F +I     +   I      M   
Sbjct: 548 NAKGEAFINDLLMMLSERLREVTGEEDIIGR-STSEF-LIYKIVESDQDILFHFKEMVAY 605

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---V 697
           +     +   E+ +    G A++     +  ++ + A  A+ + K        SF    +
Sbjct: 606 LNRRYLVQGEEVYLPLRFGIATYPDFGTSIHQLTEFAITALNYNKLNSEQKKYSFYEDGM 665

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +   +   L  A+E  EL L   P +      I+G EALI+W H +   I   +F
Sbjct: 666 KDRSEEEYRLYTRLSFAIERQELSLALQPQVDARTGTIIGFEALIRWTH-EGQPIRPDQF 724

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  ++  I  +++E   R      D      + I IN+++    D  L   +Q  
Sbjct: 725 IPVAEKYNLMLTIGDWVMEEAIRMNRVLIDSG--KSLPISINVSAVQFNDPLLISKLQDS 782

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +       IK+  +E+ ++ + E     L  L ++G+ +++DDFGT  S LSYL    
Sbjct: 783 LERYRVPAELIKIEITENTLINHKETCIEKLSLLHQLGVKVSIDDFGTGYSSLSYLRQFK 842

Query: 878 FDTVKFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            + +K + S ++G  E     I   II +A  ++ +I+A+       +  L   G   IQ
Sbjct: 843 VNELKIDRSFISGIPETDNGEITELIITLADKLDLSIVAEGAETREQVDFLCERGAFTIQ 902

Query: 937 DSHVASPLGFNSILKLL 953
             +   PL   +I++L+
Sbjct: 903 GYYYYKPLMLENIMELV 919


>gi|221124328|ref|XP_002162269.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 357

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 173/360 (48%), Gaps = 10/360 (2%)

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ARL G+ F ++L+   +  +       +   +  P+++  R +TV  S+G        
Sbjct: 1   MIARLGGDEFAVVLVEPGDIQQAPTLGRRVVHLLQEPLDISVRRLTVGGSVGLTISRGDV 60

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
           +T  E++  A++A+Y AK  G     ++       ++    ++  L  A+   EL L + 
Sbjct: 61  VTLDELMVQADIALYAAKDAGRGQCVAYTPELGAVNQRRATLEYGLRKALHQQELQLYWQ 120

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + L   +IVG E L++W HP  G IS  EF+ IAE+  MI A+  + L    R   S 
Sbjct: 121 PKVDLKTWKIVGAETLMRWRHPVLGWISPGEFIPIAEQSGMIAALGSWALLEACRMHSSA 180

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                   + + +N++S  L D+     +Q  + +   +P +++L  +ESV + + + + 
Sbjct: 181 LA-----GLKVSVNVSSMQLRDDSFLSVLQDAMDEFQVNPGQLELELTESVFLESADHAL 235

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSII 903
            +L  ++K G+ L +DDFGT  S LSYL   PFDT+K + + +    E     A++  I 
Sbjct: 236 AMLHAIKKTGVKLAMDDFGTGYSSLSYLRSFPFDTLKIDRAFVIELVEKKDAEAVVHMIT 295

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +A+ +    + + +     ++ + R GCD +Q   VA P+     +   +E +   K T
Sbjct: 296 GLAQTLGMRTVCEGVETPQQLEAIQRAGCDEVQGYIVAKPMPLQEFVVF-RENWDKTKPT 354


>gi|260683316|ref|YP_003214601.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686912|ref|YP_003218045.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209479|emb|CBA63015.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212928|emb|CBE04190.1| putative signaling protein [Clostridium difficile R20291]
          Length = 506

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 188/430 (43%), Gaps = 9/430 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++D LTG+   + F  +L         + + +  V  ID + +K IND+ G   GD +L
Sbjct: 77  AYKDELTGVNTIEKF--KLD-ANQNICINKDKKFAVFYIDFENFKYINDIFGYDYGDMIL 133

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-RE 651
                 +   +   +I AR   +RF  +    +    +        + I +   +     
Sbjct: 134 KRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNEIKNKHS 193

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           ITV + I      + K++   ++  A  A    K++ G +   +  S  +       IK 
Sbjct: 194 ITVVSGICCIEDVNEKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKS 253

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+E  E  +   P + L  ++I   EAL++W  P  G IS + F+ + E+   I  
Sbjct: 254 RIHEAIEKREFIVYLQPKVNLHSQKINCAEALVRWLTPDKGIISPAIFIPVLEKNFFIAL 313

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++ ++ E + + I    D+   P + I +N++     + +  E    + +K     + I+
Sbjct: 314 VDKYVFEEVCKWIRKRLDEN-KPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIPKNTIE 372

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           + F+ESV   N +    ++  L + G + +LDDFG   S LS L  +PFD +K +     
Sbjct: 373 IEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLDSMFFK 432

Query: 890 -GSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +  I+ ++I+ M K +  T +A+ I  +  ++ L  +GCD +Q      P+   
Sbjct: 433 ASLDKDKEKIVIKNIVHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYKPMPIL 492

Query: 948 SILKLLKERF 957
              ++L + F
Sbjct: 493 EFEEILDKEF 502


>gi|50085506|ref|YP_047016.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter sp.
           ADP1]
 gi|49531482|emb|CAG69194.1| putative diguanylate cyclase/phosphodiesterase [Acinetobacter sp.
           ADP1]
          Length = 481

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 194/435 (44%), Gaps = 6/435 (1%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E    N+  D LTG+PN+  F  +L T++       N    +++ D D + +IN   G
Sbjct: 48  LAERSDKNSEIDRLTGLPNQSGFKKQLHTLIASIHQKKNYNFGLILFDFDYFNQINTSHG 107

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD +L ++  RI ++L    +L+RL  + F I++ + ++ + +      +++ +++P
Sbjct: 108 HIVGDHILQTIASRIKKVLPQEVLLSRLGSDEFAILIPNVSSDISLMKIGSLVQQQVSLP 167

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRS 702
           +   +  I    S G A +         +++ A++A+ + K  G      FR      ++
Sbjct: 168 LYYRDHIIESNISAGGAIYPRDINQDVNIVEAADIALCYLKQSGRGGCSIFRSEMLVEQN 227

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                       + ++ +   Y P   L   ++ G EAL++W             +   E
Sbjct: 228 MIAQQFNRARHILRHNLVRPFYQPKFYLESGKLAGFEALLRWYDEDNQIQLPKLIINAFE 287

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +   ++  M   I +D+ SW +Q     + + IN A  + L +   E +   +++  
Sbjct: 288 DYSLASRLSEKMQLNIFKDMASWINQGLQL-VPVSINAAPVEFLKDNYAELLLERLNQFE 346

Query: 823 YSPSRIKLSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                I++  +E ++    +      L +L++ GI + LDDFGT  S L+ L  +P D +
Sbjct: 347 IPYHLIEIEITEHLLDDQGKNFISRALAKLKQNGIRIALDDFGTGHSSLTRLANLPVDCL 406

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +    +++   A+++S+I M+ N+   ++A+ I  +  ++ L + GC+  Q   
Sbjct: 407 KIDCDFVQRMEQEKFISALVQSVILMSNNLGIDVVAEGIESQEQLELLKQQGCEVGQGFL 466

Query: 940 VASPLGFNSILKLLK 954
            +  L   +   LL 
Sbjct: 467 FSQALAPENARALLS 481


>gi|241767276|ref|ZP_04765010.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax delafieldii 2AN]
 gi|241362044|gb|EER58185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Acidovorax delafieldii 2AN]
          Length = 654

 Score =  351 bits (900), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 99/361 (27%), Positives = 170/361 (47%), Gaps = 6/361 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+  +   I   AF D LTG+PNR  F       L       +    ++ +D+D++K++N
Sbjct: 295 ERDTARRRIHQLAFFDTLTGLPNRVQFRSNAEGALAHLQRSGDA-GALLFVDLDRFKQVN 353

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L ++ RR+ +  +  D++ RL+G+ F   L       +    A  +  +
Sbjct: 354 DTQGHAAGDALLEAVARRLVQACRRQDLVGRLAGDEFVAFLPGST-QDEALTAAQHLLDT 412

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           IA P+++  +    TASIG A +         +L +A+ AMY AK    +    F     
Sbjct: 413 IAAPLDIHGQIQVPTASIGIAMYPGDGSDIDTLLSHADQAMYQAKKEHPHGPRFFSADLS 472

Query: 700 -FRSDRVMIKEDLCLAVENSELYLVYHPII-RLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               +R  ++  L  A+ +  L L Y P +       + G+EAL +W HP WG I+ + F
Sbjct: 473 LHAQERAALERALRQALSDRSLQLHYQPQVLNDAAHTLHGVEALARWQHPDWGVITPARF 532

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  + L++L+     +  WR      P  + +N++ +     E  + + A 
Sbjct: 533 IPVAEETGLIHELTLWLLDAAFGQLARWRAAGCNVPC-VAVNLSGRSFHQPEFADQIGAA 591

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++       + L  +ESV+M     +   +  L + G  L+LDDFGT  S LSYL  +P
Sbjct: 592 LARHGLQGKDVLLEITESVMMDARPVTAANIAALHRQGFRLSLDDFGTGYSSLSYLHRLP 651

Query: 878 F 878
            
Sbjct: 652 I 652



 Score = 58.4 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 2/120 (1%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A+  + D +   D     V        + G     + G     L  +  +       
Sbjct: 21  LRRALDTTDDAIVISDGQDQVVYANAGFTRLFGFPLAELSGKRLADL-LLGPHSAPGLAH 79

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +  + G  + E  +     Q  W  + I  + ++ G     I +  DIT  K   
Sbjct: 80  TIHQSLAAQ-GHFRGEALLYGHHGQSRWTSMVINALHDATGAADGRITVLTDITLTKMHE 138


>gi|317403326|gb|EFV83840.1| hypothetical protein HMPREF0005_02060 [Achromobacter xylosoxidans
           C54]
          Length = 454

 Score =  351 bits (900), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 94/454 (20%), Positives = 194/454 (42%), Gaps = 41/454 (9%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLR---------------------------P 566
            +D LTG+ ++Q    R    L+ +                                   
Sbjct: 2   TRDELTGVLSQQELQRRARAWLNQAERQSGRGIFGPRGSALDERESLGISRARAGSRGIG 61

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISEN 625
              ++  D+Y +I+ +L       +LV +  R+  L +    ++AR   + F + +    
Sbjct: 62  AFFLVSFDQYAEISAMLRAGEDQTLLVMVADRLSLLTRALGGMVARTGTDAFTVCIPDV- 120

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           + +  A  +  + + +++P  L  R +     +G A +     +  E+ +  ++AM   K
Sbjct: 121 DEVGAAQVSAKLLEDLSVPYELGGRPLIAVFRVGAALYPDHGRSVEELQRCVQVAMVPLK 180

Query: 686 HRGGNHVESFRVS--SFRSDRVMIKEDLCLA---VENSELYLVYHPIIRLMDEEIVGLEA 740
            RGG     F     + + D+  ++ DL LA       +  L Y P+       + G EA
Sbjct: 181 ERGGPGWNMFDFRLLARQRDQQGLENDLRLALTTAAMDQFELYYQPVCDSGTGVVQGCEA 240

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W HP+ G++S +  + +AE   +I  +  ++LER       W      P   + +N+
Sbjct: 241 LLRWHHPELGSVSPAVTIELAERSGLIVPLGAWILERACSQAALWP-----PAWRVHVNL 295

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + K + ++ L + +  +++ T  +P ++ L  +ES+ + + ER   +L  LR  GI + L
Sbjct: 296 SVKQMNEDSLVQLVSDVLASTKLAPRKLVLEITESIFILHYERHVKILNTLRAKGIGVAL 355

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFG   S L++L ++P D VK + S ++          ++ ++  + + +   ++A+ +
Sbjct: 356 DDFGCGYSSLNHLRHLPIDWVKIDRSFISALESDAGSREVVSALFGLCQAMHLPVVAEGV 415

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             E   + L  +GC  +Q   +  P     I  L
Sbjct: 416 ETEGQREILKSLGCRVMQGFLLGRPAPAAEIQAL 449


>gi|167625010|ref|YP_001675304.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355032|gb|ABZ77645.1| diguanylate cyclase/phosphodiesterase [Shewanella halifaxensis
           HAW-EB4]
          Length = 491

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 216/451 (47%), Gaps = 19/451 (4%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            +++T+    L      A  D LT + NR S   ++  ++         + +++++DI +
Sbjct: 56  LSELTDSVNQLHIQSQQAECDKLTELDNRLSMKRKMAQLM------PLNKGSLVLLDIYR 109

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           ++ +ND+ G   GD++L  +  R+ +L     ++AR++ + F I   S  +S ++     
Sbjct: 110 FRYVNDLFGFNFGDELLKQMAARVKDLSPDGSLIARMNEDEFLIYFTSAMSSPQLLQ--- 166

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVES 694
            +  ++ +P ++    IT    +G  +        S ML+  +LA+  AK H        
Sbjct: 167 -LIDNLQLPYDIFGSIITTRVQVGHLALEPFHSDISTMLRRLDLALKKAKTHDVALSEYL 225

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 +   V I   L  A+ + ELY+VY P       +   +EAL++W HP+ G+IS 
Sbjct: 226 LGDDVVQLREVSIINSLAKALRDGELYMVYQPKQSFPKGDCQQVEALMRWQHPQLGSISP 285

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ +AE   MI  ++ ++L+ +      WR +     + + +N++++DL    L  G+
Sbjct: 286 AEFIPLAEYSGMIDIVSQWVLDEVFAQQALWRQK--EIKLQVAVNLSTQDLRSASLITGI 343

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A + +     S I +  +ES +M + + +   +  LR++G+ + +DDFGT  S L+YL 
Sbjct: 344 KARLEQYQLEASAISIEITESKLMQDLDGAVATINHLRQLGVDVAIDDFGTGHSSLAYLK 403

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           Y+P D VK + + +        A  I+ + I +AK +   +  + +  E  ++ L  MG 
Sbjct: 404 YLPVDEVKIDKAFLDDLDVDARAWHIMDTSIRLAKGLGFKVTVEGVETEEILQLLLGMGV 463

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D +Q    + PL        L+ R+P + + 
Sbjct: 464 DKVQGDIFSKPLKPKE----LESRWPKLSDA 490


>gi|220903914|ref|YP_002479226.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868213|gb|ACL48548.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 960

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 96/441 (21%), Positives = 174/441 (39%), Gaps = 20/441 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            S + I     +D LTG+PN   F      +L            ++  DI ++K IND  
Sbjct: 526 NSNKRIQVLLHRDMLTGLPNLYKFRQDCAKLLAD---TGKHAYVLLFGDICQFKAINDQF 582

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI------AM 637
           G + GD +L +    +   +   ++ AR S + + + L  E   L +A            
Sbjct: 583 GFSSGDRLLRAYGDILRSNVGEGELCARASADMYSMFLRYEGWELLLARLRHMDDSLDIW 642

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R+   MP  +       T    +    +       ML  A  A   AK  G   +  +  
Sbjct: 643 RQKEEMPYKVK------TVYGAYIVSGTEGRDVQLMLDLANYARREAKRNGSTSLMLYDE 696

Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +       +   L  A+   EL   Y   + +    I+G EAL++W HP  G +   
Sbjct: 697 QMRQETLLHQELNGRLETALREGELVPWYQIKVDMRTGAIIGSEALVRWKHPTRGLLMPD 756

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E   +I  I++ +  ++ + + SWR   N+P   +  N +            + 
Sbjct: 757 SFIPLFERNGLIMDIDMHVFTQVCKAMQSWR-LRNLPLYTVSCNFSRVHFDRPGFPRQLA 815

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +  +       +++  +ES +M NPE + L L +L++ G    +DDFG   S L  +  
Sbjct: 816 EIADRYAIPHELLEVEITESAIMKNPEAAWLRLIQLKQYGFKTAIDDFGAGYSSLGLVQM 875

Query: 876 IPFDTVKFNGSLM-TGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + S +      ++   +L +II MA ++E ++I + +        L R+GC 
Sbjct: 876 LNADVIKIDRSFVLRDLPGQRAQTVLGNIIRMALDLEMSVICEGVETAEQAAILMRLGCF 935

Query: 934 YIQDSHVASPLGFNSILKLLK 954
             Q  + A P   +     L 
Sbjct: 936 KAQGYYYAKPEPEHEFEARLA 956


>gi|113866047|ref|YP_724536.1| putative signal transduction protein [Ralstonia eutropha H16]
 gi|113524823|emb|CAJ91168.1| putative signal transduction protein [Ralstonia eutropha H16]
          Length = 353

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 162/352 (46%), Gaps = 6/352 (1%)

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL+G+ F +IL +  ++      A A+ + IA P  L    + V+ASIG A+W     
Sbjct: 1   MARLAGDEFTVILPAVGDAGVAGGIAEAILERIAAPYRLAGELVVVSASIGVATWPKDAD 60

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHP 726
            + ++L  A+ AM+ AK  G N  + F  +      +R+ I +DL  A+ + +  L Y P
Sbjct: 61  NAEDLLVCADQAMFAAKEEGRNRWKVFTQALLQAERERLRITQDLRTALASGQFALHYQP 120

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I+ L   ++   EALI+WDHP  G I  ++F+ +AEE  +I  I  ++L      +  W+
Sbjct: 121 IVNLRTGKVCKAEALIRWDHPVRGPIHPADFIAVAEESGLIIDIGRWVLTEALDQLARWQ 180

Query: 787 DQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                    I +N +  +        E   ++I +       + +  +E  +M       
Sbjct: 181 VLLGK-GFQISVNKSPVEFCAPASGPESWSSMIERRNVPVGSLVIEITEGSLMEQNADVM 239

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
             L R +  GI + LDDFGT  S LSYL  +  D +K + S +   T     +A+  +II
Sbjct: 240 DQLSRFQAAGIEIALDDFGTGYSSLSYLRRLDIDYIKIDQSFIRSLTRGPDDVALCHAII 299

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            MA  +   +IA+ I  E     L   GCDY Q      P+  ++    +  
Sbjct: 300 SMAHALRIRVIAEGIETESQRDILLAAGCDYGQGHFFCPPVEASAFEAYVSA 351


>gi|254975284|ref|ZP_05271756.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255092674|ref|ZP_05322152.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314411|ref|ZP_05355994.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517089|ref|ZP_05384765.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650193|ref|ZP_05397095.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 619

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 97/430 (22%), Positives = 188/430 (43%), Gaps = 9/430 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++D LTG+   + F  +L         + + +  V  ID + +K IND+ G   GD +L
Sbjct: 190 AYKDELTGVNTIEKF--KLD-ANQNICINKDKKFAVFYIDFENFKYINDIFGYDYGDMIL 246

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-RE 651
                 +   +   +I AR   +RF  +    +    +        + I +   +     
Sbjct: 247 KRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNEIKNKHS 306

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           ITV + I      + K++   ++  A  A    K++ G +   +  S  +       IK 
Sbjct: 307 ITVVSGICCIEDVNEKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKS 366

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+E  E  +   P + L  ++I   EAL++W  P  G IS + F+ + E+   I  
Sbjct: 367 RIHEAIEKREFIVYLQPKVNLHSQKINCAEALVRWLTPDKGIISPAIFIPVLEKNFFIAL 426

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++ ++ E + + I    D+   P + I +N++     + +  E    + +K     + I+
Sbjct: 427 VDKYVFEEVCKWIRKRLDEN-KPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIPKNTIE 485

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           + F+ESV   N +    ++  L + G + +LDDFG   S LS L  +PFD +K +     
Sbjct: 486 IEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLDSMFFK 545

Query: 890 -GSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +  I+ ++I+ M K +  T +A+ I  +  ++ L  +GCD +Q      P+   
Sbjct: 546 ASLDKDKEKIVIKNIVHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYKPMPIL 605

Query: 948 SILKLLKERF 957
              ++L + F
Sbjct: 606 EFEEILDKEF 615


>gi|223983865|ref|ZP_03634028.1| hypothetical protein HOLDEFILI_01309 [Holdemania filiformis DSM
           12042]
 gi|223964166|gb|EEF68515.1| hypothetical protein HOLDEFILI_01309 [Holdemania filiformis DSM
           12042]
          Length = 756

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 184/436 (42%), Gaps = 18/436 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+QD LTG  N  SF   +  ++           TV   DI K+K  ND+ G   GD
Sbjct: 318 ETLAYQDPLTGDRNFASFQKEVPALI-------KSGCTVWYCDIKKFKYFNDLFGYEQGD 370

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L   +  +   LK  ++  R+SG+ F   L    +  ++A +   +   +   +N   
Sbjct: 371 ALLRDFSTVVKASLKDDELFCRVSGDNFAG-LRQTADPQRLASWFNQLLAQLDQQMNEHS 429

Query: 650 REITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
             + +   +GF      ++  + +EM+  A +A    K + G+    F            
Sbjct: 430 ALVHLELCMGFFPVMEEELNLSVNEMVNRANIAHRSVKDQPGDQFAFFTPQLRAQTLRES 489

Query: 707 -IKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            ++     A+   E  +     +    +  IVG E L +W HP+ G I   +F+ + E  
Sbjct: 490 ELEAQAKKALARGEFEVYVQGKVNIQQNCRIVGGECLARWIHPEKGLIPPDQFIPLFEHN 549

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            MI  ++  M E+    +  + +    PPI + +N++  DL  ++  +   A+  +    
Sbjct: 550 GMITQLDRLMFEKACAWLHDYLEA-GRPPINLAVNVSRLDLFQDDFLDWYTAVKRRYAIP 608

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              ++L F+ESV++ + +    ++  LR+ G   +LDDFG+  S L+ L  +P   +K +
Sbjct: 609 DGLLELEFTESVMLKDDQIFLQIVEELRERGFICSLDDFGSGYSSLNILKNLPIQVLKLD 668

Query: 885 GSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
                       +   I+R+I+ MA  ++   IA+ +     ++ L   GCD +Q     
Sbjct: 669 ILFFRKSVDIA-RERIIIRNILTMAHELQMKTIAEGVETAEQVEFLKAAGCDIVQGYVYF 727

Query: 942 SPLGFNSILKLLKERF 957
            P+      ++L+   
Sbjct: 728 KPMPLADFDQVLQAEL 743


>gi|126699255|ref|YP_001088152.1| putative signaling protein [Clostridium difficile 630]
 gi|255100779|ref|ZP_05329756.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255306663|ref|ZP_05350834.1| putative signaling protein [Clostridium difficile ATCC 43255]
 gi|115250692|emb|CAJ68516.1| putative signaling protein [Clostridium difficile]
          Length = 619

 Score =  350 bits (899), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 187/430 (43%), Gaps = 9/430 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++D LTG+   + F  +L           + +  V  ID + +K IND+ G   GD +L
Sbjct: 190 AYKDELTGVNTIEKF--KLD-ANQNICIHKDKKFAVFYIDFENFKYINDIFGYDYGDMIL 246

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-RE 651
                 +   +   +I AR   +RF  +    +    +        + I +   +     
Sbjct: 247 KRYANLMMNDIGKYEIFAREIADRFVALRCYVDKEDLVVRQRDVDNELINITNEIKNKHS 306

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           ITV + I      + K++   ++  A  A    K++ G +   +  S  +       IK 
Sbjct: 307 ITVVSGICCIEDVNEKLSIDGLINRANFAQKTVKNKPGTNYAFYNDSIRKKMIEENTIKS 366

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+E  E  +   P + L  ++I   EAL++W  P  G IS + F+ + E+   I  
Sbjct: 367 RIHEAIEKREFIVYLQPKVNLHSQKINCAEALVRWLTPDKGIISPAIFIPVLEKNFFIAL 426

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++ ++ E + + I    D+   P + I +N++     + +  E    + +K     + I+
Sbjct: 427 VDKYVFEEVCKWIRKRLDEN-KPFVQISVNVSRIQFYNTKFVETYSNIQNKYRIPKNTIE 485

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           + F+ESV   N +    ++  L + G + +LDDFG   S LS L  +PFD +K +     
Sbjct: 486 IEFTESVAFENQKHLLEIIHDLHENGFTCSLDDFGKGYSSLSVLKDLPFDVLKLDSMFFK 545

Query: 890 -GSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               + +  I+ ++I+ M K +  T +A+ I  +  ++ L  +GCD +Q      P+   
Sbjct: 546 ASLDKDKEKIVIKNIVHMLKELNITTVAEGIECKEQVEFLRDIGCDLVQGFVFYKPMPIL 605

Query: 948 SILKLLKERF 957
              K+L + F
Sbjct: 606 EFEKILDKEF 615


>gi|157368401|ref|YP_001476390.1| putative phosphodiesterase [Serratia proteamaculans 568]
 gi|157320165|gb|ABV39262.1| diguanylate cyclase/phosphodiesterase [Serratia proteamaculans 568]
          Length = 668

 Score =  350 bits (899), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 102/502 (20%), Positives = 212/502 (42%), Gaps = 28/502 (5%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H          L++         Q        D++          + N N +  R   
Sbjct: 183 MVHP--LRAMAKELENISQEEAPYHQLMLPALHQDDEL------GLLVRNYNRNQQRLA- 233

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
                    K+   +   +    +T +PN+  F   L   +  S   +  R  ++VI I+
Sbjct: 234 ---------KAYAEMSRMSTHHPVTELPNQALFTALLEQHIASSLRPE--RFNLLVISIE 282

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
              + + VL  A+ + +L++L +++ E +    +LA+LS   F I+             A
Sbjct: 283 TLHEASGVLNPAMREVLLLTLVKKLRECIDENGVLAQLSKTEFAILAKGVERPFHAMQLA 342

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   I  P++L E  +  +ASIG A + +   ++ ++L++A  AM  A   G N V  
Sbjct: 343 RRIMAQINAPLSLQEMPLRPSASIGIAHYLNPGESAEQLLRSATSAMMSAHREGKNQVLF 402

Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S     +  +  + ++  A+E     L   P + +    ++G EAL++W        
Sbjct: 403 FEPSLTERTQKRLTQESEILHAIEQRRFTLFLQPQVDMQSNSVIGAEALLRWQQYDGSFT 462

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             ++ + +AEEL +I  +  ++LE     +  W+ +     + + +N++   +   +   
Sbjct: 463 LPADVIPLAEELGVIVPLGNWVLEEACLILADWQARGIT--LPLAVNVSPIQMKHEDFIP 520

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +++L+++    P ++ L  +E+V + + +R+  LL  L  +G+S+ LDDFG   S L+Y
Sbjct: 521 HLKSLLAQYQIDPRKLLLEITETVRIDDLDRALALLRELHDLGLSIALDDFGMGYSSLNY 580

Query: 873 LGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L     +P D +K + S + G      A++R +  +++ +   ++A+ +        L +
Sbjct: 581 LNRLKCLPIDLIKIDKSFIQGLPTDD-AMVRIVSSISEVLALPVMAEGVENAEQRDWLLQ 639

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            G    Q    A PL  +    
Sbjct: 640 QGIHSGQGFLFARPLPRSEFEA 661


>gi|310827166|ref|YP_003959523.1| hypothetical protein ELI_1574 [Eubacterium limosum KIST612]
 gi|308738900|gb|ADO36560.1| hypothetical protein ELI_1574 [Eubacterium limosum KIST612]
          Length = 735

 Score =  350 bits (899), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 188/436 (43%), Gaps = 17/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   AF D +TG      F   L   L  +         +M  D+D +K +N+  
Sbjct: 310 RQQANLRRIAFVDTVTGGNTFNKFTVDLQAALAANPEHPGY---LMTFDVDNFKYVNNYY 366

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +  ++ E +K  + LAR+SG+ F ++L               +   +  
Sbjct: 367 GFDVGDKILRHIYDKMAEQMKPGESLARISGDHFIVLLQ--------EAAPERLNGMLKA 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFR 701
            +   ++ + +  + G         + S M+  A  A    K      +  +  +     
Sbjct: 419 SME-NDQGVMLYYTAGVYEIADPDESISLMVDKASAAAQVNKGMMRKEIAFYSVQFDEQM 477

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +   +K  +  A+ N E+   + P + +   EIVG E L +W   +    S +EF+ + 
Sbjct: 478 IESEQLKRSVEQALTNDEIVPFFQPKVNINTREIVGAEVLARWITREGRLRSPAEFIPLC 537

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +++ + E+    +    D+  +P + I IN +   LLD+   + +   I + 
Sbjct: 538 EKTGLITELDMIIFEKTLAFLRMNLDEK-VPCVPISINFSRLHLLDDGFFDKITRRIHQY 596

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  I++  +ES +  N E       +L + G+ +++DDFG+  S L+ L  IP D +
Sbjct: 597 NIPPELIEIELTESAIFDNHEIISEFTNQLHQYGLQISMDDFGSGYSSLNMLKDIPIDVL 656

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +  +++ +    IL +I  MAK ++  ++ + +    ++  +   GC   Q  +
Sbjct: 657 KIDRAFLEETSDSKKQRVILSAIAHMAKRLDIRVVVEGVETIENVNLMKEFGCYIAQGYY 716

Query: 940 VASPLGFNSILKLLKE 955
            A P+   S  K+ KE
Sbjct: 717 FAKPMDEESFGKIYKE 732


>gi|307298321|ref|ZP_07578125.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916407|gb|EFN46790.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 829

 Score =  350 bits (899), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 212/538 (39%), Gaps = 20/538 (3%)

Query: 429 TTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
             +   +T+ G +  S+       +   +    R++     +  +  ++  L YE++   
Sbjct: 297 FVSAGCSTLTGYSPESLINNKELAFCDLVAPEYRESLWIEWEKTLA-KKVPLNYEYQTIT 355

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           A+ +  W++     +    G++    GI  DIT +K+  + +  N+  D  TG+ N    
Sbjct: 356 AEGERKWVLEMGEGVFGEGGEVEALEGIIIDITYRKRIEDRLKYNSEHDRWTGLHNLNYL 415

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L                 + I+++  + +    G     +++  +   +G+      
Sbjct: 416 ETLLER---DGKHRRLENRAFVSINLNTVQSLTATYGFHYTQELMREVADMLGQYCTDRR 472

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           +L     N F   L    +  ++ +F   +   +   +        +   IG        
Sbjct: 473 MLFYTYENLFVFYLKDYKDREELTEFCRDIANMLESLLVAE----RIGGGIGVVQIDKDS 528

Query: 668 I-TSSEMLKN----AELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN---SE 719
                +++K     +E A+       G       +         IK +L     +    E
Sbjct: 529 DRDVDQLMKRLLIASEKALNIYDRDVGICFYDAEIEMEMIREEEIKRELAKIGADENYGE 588

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L+L Y PI+ L    I G EAL +    K+G + + EF+ IAE+  +I  I    + R  
Sbjct: 589 LFLQYQPILDLESNRICGFEALSRLKIEKFGLVPALEFIPIAEKTKLIVPIGRRAIIRAL 648

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R +   +D      + + IN+++  LL ++  E +  +I +T  +P  I L  +ESV   
Sbjct: 649 RFLRRLKDNGFGGVL-VSINVSAIQLLRSDFSENLFKMIDRTQVNPENIGLEITESVFAS 707

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIA 897
           N E    ++G L+  GI + +DDFGT  S L+    +  + +K + S +      + +  
Sbjct: 708 NYEEINRIIGGLKDSGIQIAIDDFGTGYSSLARERELNVNCLKIDKSFIDKLMCLDAKDT 767

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I   II MA  +   +IA+ +  E   + L   GCD IQ   +  PL   + + +LK 
Sbjct: 768 ITSDIISMAHKLGHCVIAEGVEHEKQRQYLHSWGCDRIQGYLIGKPLDEEAAIGVLKA 825



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
             P    I G     +      W+   + +D D                   E R    D
Sbjct: 169 FNPMFEKITGRTKDELM--ELGWVKITYPDDLDKDLINFKKLQRGELSSYSMEKRYVRPD 226

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               W+ + + P+  SN D   +I +A +IT +K+   
Sbjct: 227 GSIVWVQMTVAPLIISNDDRYNHICLAQEITRRKEMEA 264


>gi|163781678|ref|ZP_02176678.1| tyrosyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882898|gb|EDP76402.1| tyrosyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 844

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 215/523 (41%), Gaps = 33/523 (6%)

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           L   S+ G    +  ++H    +    + +  +  R   L  E   +        + +  
Sbjct: 336 LPVTSLSGKELIFHHHVHRE-NERLTDVEEEMLRLRTKVLLLE---KPQLGGIVGVGLNS 391

Query: 500 RPMSNSNGD---------ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               ++            ++  IG A  I+   + +E     A +D+LT + N+++F + 
Sbjct: 392 ELAQDTYKHTVLDAILATLINVIGSAKAISTHVQEVEFY---AMRDSLTFLYNQRTFWEL 448

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
               L+ +      + ++M++D+D +K IND  G   GD VL  + R I E  +  D+ A
Sbjct: 449 FNYELERAERFGR-KLSLMLLDLDNFKVINDTYGHVFGDTVLREVGRIIYEKKRKADVAA 507

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIA--MPINLLEREITVTASIGFASWTSSKI 668
           R  G+ F ++++      +    A  ++++I     I   ++ I V  SIG +++     
Sbjct: 508 RYGGDEFALLVVG-AGVTEAYSLAKRIKEAIENLTFIAEEDKVINVEVSIGISTFPDHAK 566

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYH 725
              ++   A+  +  AK  G + ++             + E    +  A+   E+   + 
Sbjct: 567 NPRDLFILADNLLRKAKEEGRSRLKVPSYEDLSKIGSFLTEKSIQILDALNKREIVPYFQ 626

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI+ L   E+   EAL++        + ++ F+  AE L ++  ++L + E + + I   
Sbjct: 627 PIVDLNTGEVFANEALMRI---GKHRLPAAAFIEAAENLGVLVRMDLILYEEVFKKIK-- 681

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
            +Q     IF+  N + + LL  +    + +L+     SP  +    +E   + N E   
Sbjct: 682 -EQGYKKKIFL--NFSPRVLLLEDFSSRLSSLVEGLGISPGNVVFELTERESVRNIELLE 738

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
             +  +++ G    +DDFG+  S   YL  +P D VK  G  +          + + SI+
Sbjct: 739 KFVKVMKENGFKFAIDDFGSGYSSFYYLKRVPVDYVKMEGEFVKDIVSDWRDRSFIASIV 798

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +AK +    +A+ + GE  +  L  +G DY Q  +   P   
Sbjct: 799 ALAKGMGIKTVAEFVEGEDILNYLRELGVDYGQGFYFGKPSPE 841


>gi|148554438|ref|YP_001262020.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
 gi|148499628|gb|ABQ67882.1| diguanylate cyclase/phosphodiesterase [Sphingomonas wittichii RW1]
          Length = 711

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 120/623 (19%), Positives = 256/623 (41%), Gaps = 36/623 (5%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
           +   G  + +       + +    G    +    G   ++  LA         + G R +
Sbjct: 104 VGSTGSALLVIVDDIASLDRYLAAGATHYLAASFGEEEMRIALAFADRHAERLAGGGRAA 163

Query: 409 L---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
               A+  S    W W      VT +  +A  +G+A+ ++  P+      +    R   R
Sbjct: 164 SVRAALRLSESEAWIWKPGDRMVTLSAALADRIGVATETV--PMSMLFRLMDRESRRLAR 221

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +D  +   R    +  R RA  ++    I        S  +    +    ++  +   
Sbjct: 222 EAIDRLLSTGRST-AFAHRSRALGDRLAHHI--------SYDEERHAVVAWVEVDRRDGE 272

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN---LRPTVMVIDIDKYKKINDV 582
             G       D LTG+P     +DR+   ++    DD     R  ++++ I ++  +N  
Sbjct: 273 PAGDDG----DALTGLP----AVDRIRQWVERRLADDQLAEPRCILLMLGIMRFGLVNAA 324

Query: 583 LGIAVGDDVLVSLTRRIGELLK----FPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            G   GD VL  + RRI  ++        ++AR +G+ F I L +   +      A  + 
Sbjct: 325 FGRPTGDAVLQGVARRIERVIDRIGLDQTMIARTAGSEFTIALGAPVTADTAELIANRLV 384

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKH--RGGNHVESF 695
           +S+A P    +  I ++  +G A+        +  + + A  A+  AKH   G       
Sbjct: 385 ESVAWPFVSGDSLIPLSCRVGIAAIDGDARRDAGTLFQRAAAALAAAKHGDTGLVRALDA 444

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              +    R  ++ DL  A+++ ++ +++ P + +   +I+G+EAL +W HP+ G + + 
Sbjct: 445 DSEAEAHRRNQLEIDLRRALDHDQIDILFQPQVDIRSGQIMGVEALARWRHPQLGELGAV 504

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
                A     +  ++ ++ +R      SW        + + +N+ + D+      +   
Sbjct: 505 PLFATAARSDFVVQLSTYVQQRALEVAASWPAHMGN--LRLSVNVTAADIAQPNFVDDFL 562

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + K  +   R+ +  +ES ++ +   +  LL +LR  G+ + +DDFGT  S L+YL  
Sbjct: 563 GRVDKAGFPRDRLTVEVTESGLIADLAGAAGLLSQLRGAGLRVAIDDFGTGYSSLAYLKA 622

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K + +L      + +   ++R +I MA+++   +I + +  +  +  L R GC+
Sbjct: 623 LPLDYLKIDKTLAEDITGSTRDRIVVRGVIEMARSLGLAVITEGVETKAQLSLLAREGCN 682

Query: 934 YIQDSHVASPLGFNSILKLLKER 956
           Y Q    + P+   ++  ++ ++
Sbjct: 683 YYQGYLCSPPIDSGTLEAMVVDQ 705


>gi|24376206|ref|NP_720250.1| sensory box protein [Shewanella oneidensis MR-1]
 gi|24351261|gb|AAN57693.1|AE015905_5 sensory box protein [Shewanella oneidensis MR-1]
          Length = 764

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 124/653 (18%), Positives = 273/653 (41%), Gaps = 32/653 (4%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL---VLIVILIGFT 385
             M+ +    LL+  +  +  + +     +  +    +  P     +      V+ +  +
Sbjct: 124 RFMRVWGLGALLLIGFTCVLYYLLIRPFKLLSKSAKHVGTPEFTIQVPWSAAEVLSLQTS 183

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q     G   + +    +R   AV GS + +WDWD+    V  +     ++G     +
Sbjct: 184 LQQVHERLGRAVKQLNDSEQRWLFAVEGSRNGIWDWDLRTGEVFLSDRWKEMIGYLPDEL 243

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
            G  + W   +H +D+      LD +V  +    +   R+   D  + W+  R   +  +
Sbjct: 244 EGAFQTWEARLHPDDKQAVLNCLDEYVSGKTKEFESVHRLLHRDGHYVWVFDRGMLVDWD 303

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG---IPNRQSFLDRLTTILDLSATD 561
             G   R IGI  D++E +K+   I     Q + +G   +P  ++F+++L+  L      
Sbjct: 304 HLGRPTRMIGIHVDVSESEKNHAAIAELVKQ-SASGHRMLP--EAFMEQLSQYLSQRNRA 360

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ +++D    I+D L     + +L  L  R+        ++A +    F  ++
Sbjct: 361 -GYWGALLFVNVDT-HDISDSLSTHELERLLSQLGARLSSYFTENIVVAHIEFGNFAFLV 418

Query: 622 ISENNSLK-----IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM-LK 675
                  +         A  +R+    P +  E   ++ A++G     S +  + E+ ++
Sbjct: 419 KDLAVDAEMAGRRALALATELRQITMRPFHYGEHHFSLVANLGICLLDSVETLAPELVVR 478

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A+LAM H K         +     R       +   L  A+ +++L L++ P++ +   
Sbjct: 479 RAQLAMEHGKSSEHAGCAFYHPDLARALDPEPSLLNALQRAITDNQLSLMFQPVVDV-YG 537

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +I   E L +W       +  ++F+ +AE+  ++ +++L + ER+ + +  +R      P
Sbjct: 538 KIESAEVLSRWSLANGEIVPVAQFISLAEQNGLVASLDLNVTERVCQLVKQFRQLGITLP 597

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + +NI++      +  E   A++        ++ +  +ESV + +       + +L +
Sbjct: 598 -RLTLNISTLSFCQADFIEQFIAVVRSYELDDKQLGVELAESVFLTSKAFVEPRIIQLVE 656

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFN----GSLMTGSTEKRIAILRSIIPMAKNI 909
            GI++TLD+FG   S LS L   P   VK +     SL+  ++    A+++++    +  
Sbjct: 657 AGIAITLDNFGAGQSALSCLHNYPLTEVKLDVHCAVSLLNDASWN-QALIQAV----QPF 711

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           +  I+AK +      +  T +GC + Q  ++A  L  N   +L+  R PL+++
Sbjct: 712 KLPIVAKGVESVQQQQLFTTLGCTHFQGYNIARALSLNDFKQLVCPR-PLLRS 763


>gi|328470861|gb|EGF41772.1| hypothetical protein VP10329_08692 [Vibrio parahaemolyticus 10329]
          Length = 860

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 107/569 (18%), Positives = 225/569 (39%), Gaps = 29/569 (5%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
           T      +     +       S   +    I R+ V        +L      +       
Sbjct: 299 TSMTQSQLKDSMAKFGALYHSSSLGMLIV-IEREIVDANHRALELLHYKKSDILEQP--- 354

Query: 453 LPYIHINDRD--NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           L  +  +  +      +       +    Q+E ++  +  +    +I    +   NG   
Sbjct: 355 LDTLCPSTNEECRVDAMYRELQNGQT---QFEAQMLDSHGETIDCLIEATLIQ-HNGHTA 410

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             + +  D++E K+  E I      D ++G  NR   L  L  ++           + + 
Sbjct: 411 LML-LLQDLSENKQQAEMIQKLTDFDPVSGFCNRPVILGALEELVK----HQPNHFSFIY 465

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           I     K+I +V G  + D+ +  ++  + + L     + R+S + F +IL + +     
Sbjct: 466 ITSKSLKQIAEVYGHLIFDEAIQYISTWLRDHLGTH-QIGRISEHEFIVILPNASGHSDA 524

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A  +   ++  I L    +++ +         +  +   +L    +A Y A+   G 
Sbjct: 525 LEAANRLLNQLSYKIELSGIMLSLDSKAVMVDPKITHQSLEHLLL---VARYSAQSMSGR 581

Query: 691 HVESF-----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           H+         +S      ++I  DL +A+    +   + PI+     E++G EAL +W 
Sbjct: 582 HMHEVLVADGELSEQAETSMIINRDLEVAIRQDNIIPYFQPIVNAKSGEVIGFEALARWP 641

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW---RDQANMPPIFILINIAS 802
           HP  G IS   F+ +AE+  +I  +   +L +    I      R    +PP+ + +N+++
Sbjct: 642 HPTLGIISPLIFIPLAEQGKLIVELGESILNQSCDFIGKLNTKRHSQGLPPLTVHVNLSA 701

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +    + L   +Q++I +   S   + L  +ES++MG    S   +  ++++G+ L LDD
Sbjct: 702 QHFYHSRLISFLQSMIEEHNISAGHLVLEITESMLMGGETESIHCINEIKQLGVQLALDD 761

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  +  S +   P D VK + S +        A  ++R+I  M++ +  TI+A+ +  
Sbjct: 762 FGTGYASFSSVCNFPLDIVKLDKSYVDEIETNDRAKTLVRNIANMSQELGLTIVAEGVET 821

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +++L     D +Q  +   P+     
Sbjct: 822 ASQVRKLKVWNIDELQGFYFYKPMTREDA 850


>gi|254489816|ref|ZP_05103011.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224464901|gb|EEF81155.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 698

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 111/587 (18%), Positives = 239/587 (40%), Gaps = 27/587 (4%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++    +    A     +   S   R    +    + V   D              + G 
Sbjct: 116 ILSQRQLFEAQAMSKREKEFTSLELRFQNILAMLTEAVVICDTDGKIQLVNDYCNVLFGY 175

Query: 441 ASGSMHGPIRNWLPYIHIN-----DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
               + G     +  +         +D           +    +  E            +
Sbjct: 176 NDNELIGR---DINILLPEKAKQTTQDKANPTYRFTGEHAMVGVIEEVEAITKTGAEVTV 232

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            I +   S+  G    Y+ +  D++E+K++   +L  A  D+L+G+ +R++    L T  
Sbjct: 233 EINLMDYSDHKG--SHYLALIRDLSEKKRTQARLLKAALYDSLSGLHSREALE--LDTEK 288

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSG 614
            ++   +       +IDID++ ++N V G    +D++ SL +++   L      + R+  
Sbjct: 289 MVAIGTEKSFFA-CLIDIDRFHQLNSVFGHRRCNDLIRSLAKQLRRSLSDLQIRIYRIGS 347

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSE 672
           + F +  I   ++ +I  +   +  +    I+    +    ++ S   + +    + S  
Sbjct: 348 DVFVVKSIKPLSNHQIERYKKTLDVAFERLISSLSSDLNHRLSISAVSSLFNIDILKSGA 407

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIR 729
           ++   E A+   K  G +    F         S    + + L   V+ S+L +VY P + 
Sbjct: 408 LVSMLEGALKLNKAEGYSGQIRFIEKLNYGVSSQMAELSQSLFDKVDESKLSVVYQPKVA 467

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L + ++   EAL++W    +  ++  +F+ +AE+   I  +  F+++++   +       
Sbjct: 468 L-NGKVTSSEALLRWQDEFFSPLNLGDFIYVAEDTGAIIEVGYFVVKQVCMALSELSQTG 526

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + IN++ + L D+ L E + A+       P+RI    +ESVV  N +    +L 
Sbjct: 527 RE--MCVSINLSLRQLADSHLIENIVAICRDYNIEPNRITFEITESVVAENIDMVTTILF 584

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAK 907
            L++ G SL++DDFGT  S   Y+  +P D +K + S +    +++    I+ +II M+K
Sbjct: 585 MLKEQGFSLSVDDFGTGHSNFKYIHKLPIDEIKIDKSFVDDVVDEKGFYPIVETIISMSK 644

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++  ++A+ +  +  +  L +  CD+IQ      PL      K L+
Sbjct: 645 AMDLDVVAEGVEHQCQVDYLNKKDCDFIQGYFFYKPLSKE---KWLE 688


>gi|167750326|ref|ZP_02422453.1| hypothetical protein EUBSIR_01300 [Eubacterium siraeum DSM 15702]
 gi|167656686|gb|EDS00816.1| hypothetical protein EUBSIR_01300 [Eubacterium siraeum DSM 15702]
          Length = 1195

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 109/527 (20%), Positives = 216/527 (40%), Gaps = 32/527 (6%)

Query: 440  LASGSMHGPIRNWLPY-IHINDR---DNFRTILDSFVGYRRGRLQYEFRVR-AADNQFHW 494
            + S S+      WL   IH +D+   D+F   + +   Y+         +R   D +  W
Sbjct: 677  IKSSSVGPLRAIWLSGAIHPDDKLIYDSFCRKIKNSFDYKITDASLTVNIRLCEDGKPVW 736

Query: 495  MIIRIRPMSNSNGDILRYIGIAN--DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
              I ++ +S  +G +    G     +I E   S+E +      D      N   F D + 
Sbjct: 737  YGIYVQ-LSGRDGKMEEIAGSIKALEINE-IMSIEILDYYTTTD------NPIMFHDMI- 787

Query: 553  TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
              L       + +  ++  DI ++K IN+  G   G ++L  ++R++        I AR+
Sbjct: 788  --LQRLTAYPDTKFALVQFDIKRFKLINENYGEDAGTEMLQFISRQLSNFCGKQQIGARM 845

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            SG+ F  +L    +   +      +++ +        R+ +     G        ++   
Sbjct: 846  SGDVFV-LLTPYEDKDGLLSVISELQRCLK-----NFRQYSYEFVFGIYLIEDRSVSVRT 899

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
            M   A +A    K      +  +  +  ++ +    ++  +  A++N+E  +   P   +
Sbjct: 900  MCDCAAMARQSIKKNALESIAFYNKNMQKAIKERKFVESHMKKALDNNEFIIYLQPKFSI 959

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               E +G EAL++W  P+ G I    F+ + EE   I  ++ ++ E     +  W D+ +
Sbjct: 960  SSGEAIGYEALVRWQSPEKGMIYPDGFIPLFEENGFITKLDAYVWECACMVLRDWIDR-H 1018

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              P+ I +N++  +L D    + +  LI K       ++L  +ES  + N + +  +  +
Sbjct: 1019 FTPLPISVNVSRANLDDESFLDVLDGLIDKYRLPKHLLELEITES--IEN-DATLRMTEK 1075

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKN 908
            +++ G  L +DDFG+  S L+ L    FD +K +        S ++   I+   I M+K+
Sbjct: 1076 IKEHGFVLLMDDFGSGYSSLNTLQDTRFDVLKLDREFFSTHMSNDRGKKIIMHTISMSKD 1135

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   +IA+ +      + L   GCD  Q    A P+      K LK 
Sbjct: 1136 VGLGLIAEGVETADQAQFLENCGCDTAQGYLYAKPMPVQEAEKYLKN 1182



 Score =  115 bits (287), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 94/274 (34%), Gaps = 19/274 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT I NR+ + +R++ ++     ++     ++  D+D+ K+IND  G + GD  + ++
Sbjct: 463 DPLTNIYNRRGYFERISELML---GNEKCNVILVSCDMDRLKEINDTYGHSEGDIAIKAV 519

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINLLEREITV 654
              I        I AR  G+ F + +    +   +++     ++  I        +   V
Sbjct: 520 ADAIKTGCGKDGICARFGGDEFILTVPYNTDKQRELSRLVGEIQTEIDKFNRSAGKPYEV 579

Query: 655 TASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIK-- 708
           + S+G +  T S     +E++++ +  MY  K         V      +      M++  
Sbjct: 580 SISVGGSYGTVSSVEEVNELMRSTDRLMYEQKRMKKGERGPVFQPVPEAQEKPAAMLEDY 639

Query: 709 -EDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +             Y   +      I              G + +            
Sbjct: 640 RSRIHEIFSQFDRCTYFYMDYLNFKWYIIENDHMPKCIKSSSVGPLRAIWL------SGA 693

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           I   +  + +   R I +  D   +    + +NI
Sbjct: 694 IHPDDKLIYDSFCRKIKNSFD-YKITDASLTVNI 726


>gi|254459307|ref|ZP_05072728.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207083920|gb|EDZ61211.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 702

 Score =  350 bits (898), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 107/570 (18%), Positives = 231/570 (40%), Gaps = 40/570 (7%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           +++        ++   +   R S   +  + D V   D  +  +          G +   
Sbjct: 158 ILEQAKELIEANKRNANSKLRISAKVLEKTSDGVVVTDKEQKIIFINSGFTKTTGYSESE 217

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G     L     +  + F   +   +    G+ Q E   +    + +  ++ I  + N
Sbjct: 218 VIGKNPKILNSGKHD--EKFFASMWDSL-NSTGQWQGEIWNKHKSGRIYPELLNICQIIN 274

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G++  Y GI +D+T Q+++ + +   A+ D+LT +PNR      +             
Sbjct: 275 EDGNLEYYAGIFSDLTTQEETKQRLYELAYYDDLTSLPNRSLLNKDMK---------IQP 325

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILIS 623
              V +++I  +  INDV G   G+ +L  L+ R  E L      + R+  +   I+   
Sbjct: 326 EAYVAILNIRGFTHINDVFGFDAGNFILRELSNRFSEKLMGNGFSIYRVGSDEVVILNNI 385

Query: 624 ENNSLKIADFAIAMRKSIAMPINL---LEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +  K  +F  A+ K +   I      E +I+VT   G              L+ A++A
Sbjct: 386 LTSKDKFREFIAAVIKQMDNEIFHYPKDEVDISVTIYAGICF------DKERRLEKADMA 439

Query: 681 MYHAKHRGGNHVESFRVSSFRSDR---VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           ++ A+    ++V   +    ++ +   + I   +  A++N ++   Y PI+ L +  I+ 
Sbjct: 440 LHQAQIEHKDYVVYSKDEDTKNIQEKNIEIINKIKNAIQNDDVIAYYQPIVDL-NASIIK 498

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++             F+ IA++      I   ++ +         +          
Sbjct: 499 YEALVRLRDGDDILTPY-FFLDIAKKTKYYHQITHRVITKTFELFRDREESF-------S 550

Query: 798 INIASKDLLDNELCEGMQ-ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
           IN+ ++D+L+ E+   ++  L++ +     R+     ES  + N       +  ++K+G+
Sbjct: 551 INLTAEDILNTEVVSFIKSELLNFSNI--ERVIFEIVESEDIYNIIEIEEFIIEMKKMGV 608

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTII 914
            + +DDFGT  S  SY+  +  D +K +GS++    +      I+++I+  AK +    I
Sbjct: 609 KIAIDDFGTGYSNFSYMMKLEPDYIKIDGSMIKNIDKDDNARRIVKTIVTFAKELSINTI 668

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           A+ ++ +        +G +  Q  + + PL
Sbjct: 669 AEFVHSKEVFDICKELGVNEFQGYYFSEPL 698


>gi|23014126|ref|ZP_00053960.1| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 679

 Score =  350 bits (898), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 104/428 (24%), Positives = 178/428 (41%), Gaps = 9/428 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   + +D LT + NR+ F + L   +D S    +    V  ID+D +K IND  G
Sbjct: 258 YQHRLEDLSIRDPLTRLYNRRKFDEFLDHEIDRSQRHGHP-FCVAQIDLDDFKNINDTFG 316

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD VL  L   +   ++  D+LAR+  + F ++L        IA      +      
Sbjct: 317 HPIGDLVLKELASVLNREVRRTDMLARVGADEFSVLLPETTMEEGIAAAEKMRQAIADCQ 376

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSD 703
           + L    + +TAS+G   +  +   + ++   A++A+Y AK  G N V            
Sbjct: 377 LGLPVGGVRITASVGLVGYPENADDAQKLAIAADVAIYKAKRSGKNQVAVIGEGEDATVA 436

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                E +  A+    L   Y PI+   D  I   E L +        + + +F+  AEE
Sbjct: 437 IFSQGEMVRSALAEGRLVPYYQPIVAAEDGSIAAYEVLARVVDGD-QAVCAGDFIESAEE 495

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L +   I+  + +     +        +    I +N+++K L D E    +   +     
Sbjct: 496 LGLAGEIDAAVFDGALEAMA----AGKLGNAKIFVNLSAKSLTDRERMMSIPDRLRAAGV 551

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           SPSR+ L  +E   + +      ++  LR  G+   LDDFG+  S   YL YI  D VK 
Sbjct: 552 SPSRVVLEITEREALPHFGDIVTMINELRSSGLGFALDDFGSGFSSFLYLKYITVDYVKI 611

Query: 884 NGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            GS +    + E+   ++  I  MA+      IA+ +  E  +  L +MG +  Q  H+A
Sbjct: 612 EGSFIRHVVTDERDRIMVEHIHSMARRFGMITIAEFVEDENTMVLLRKMGINLCQGFHIA 671

Query: 942 SPLGFNSI 949
            P   + +
Sbjct: 672 MPKPIHRL 679


>gi|85711572|ref|ZP_01042630.1| Signaling protein [Idiomarina baltica OS145]
 gi|85694724|gb|EAQ32664.1| Signaling protein [Idiomarina baltica OS145]
          Length = 944

 Score =  350 bits (898), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 152/958 (15%), Positives = 332/958 (34%), Gaps = 54/958 (5%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGED-FQVFTAADIDGISR 73
           FL+++  L+ + S + A + + +S+    L L+      V       Q            
Sbjct: 9   FLLVIWALMLIGSHASASDIVTVSAQTDRLLLSQDMTFRVLPANTSLQQLDINRARYWQS 68

Query: 74  R--IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI-ISV 130
              ++ SA +      W +  L N S      ++ +    +  +  F  +     I  + 
Sbjct: 69  FEALKQSAQANNDTTVWGLATLYNRSAINQAFVVDLGGSYVKYAQVFVINRNEEVIDSAD 128

Query: 131 TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTP--NLPQIYLWEPNFYKDTVNSF 188
              +   + R   +   +  I +     V  ++ + TP   +  I LW P   +  +   
Sbjct: 129 VRFKDGLIQRPYLAQQMMLPIEVPARTTVRLLVSVETPPEYVNPIQLWNPGSLQLHLQQK 188

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL--P 246
               GI +G+  L+A+        NR  + +    +   ++  + +  G      +   P
Sbjct: 189 QTALGINVGLMVLIAVAAFSMTRGNRRRLQLSIACVCVTLILVVLLHSGLWITYFSPLKP 248

Query: 247 SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMV 306
           S   L+     +  L       + ++    R    V            +   +  + PM+
Sbjct: 249 SIAQLLMPYSQQWLLVVLGWACVELFSRLARQSQIV-RGLKLITLVFIVSAVLQPWAPML 307

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW-----MAITKR 361
            ++       S ++      ++       R  +   A +L  +  + L      M+ T  
Sbjct: 308 RSAWWLAAQNSALMLTALLAMFFITSSRARNRVFWEASLLTVLTVLSLLITWPRMSSTWV 367

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLAT--GYFSQGIFSDGERQSLAVLGSGDIVW 419
             N I+    +   +L +++  F  I   LA           +   R  L    S +  +
Sbjct: 368 GQNTIVVYCAMTATLLALLIANFERISEQLAHKVHRLKAANLTIRRRMRLFQQRSSEGWF 427

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGR 478
           + D     +       ++LG ++ SM   +++W      +  + F    L      R   
Sbjct: 428 ELDRKMQWIRANKPFLSMLGCSNKSML--VQHW-----PSAEELFGEAALSWREPGRSEH 480

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            Q    +     Q  W  + I P    +G     +G   D+++Q  +   +   A  D+L
Sbjct: 481 WQQLVNITLISGQRRWFSVSIYP----DG-----LGHVMDVSKQIDAEMQLNYLAKHDSL 531

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N + F       +  +  D     TVM+IDI  +  + D +G    D  L+ L  +
Sbjct: 532 TGLLNFEEF-----KRIFQAKLDKQKPCTVMLIDIKGFDVLCDQVGGQHRDQALLQLILQ 586

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTAS 657
           + +       LAR   N   I+     +   +      + + +     +   R    TA+
Sbjct: 587 MKKKTPQTMRLARYPVNGIAILGPD--DEQAVFALCYQLVQIVREFRYSTEGRVFQFTAN 644

Query: 658 IGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLC 712
            G A    + ++ +  +++ A  A   A+  G   V             S+    ++ L 
Sbjct: 645 AGMAVAKDANLSIAERLIRQAHDAEKIAQQLGDFKVYSATADDHRRLQTSEERRWEDRLR 704

Query: 713 LAVENSELYLVYHPIIRLM-DEEIVGLEALIQWDHPK----WGNISSSEFMLIAEELCMI 767
            A+ N +  +   PI+    +++    E L++  +         I+  +F+  A +  ++
Sbjct: 705 SALVNQDWQVFRQPILSASLEQDKHCYEILLRLPNDDALEPDEAIAPQQFLNAAVQAGIM 764

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
              + ++   +         +A        +N++ + L D +    ++++++ +   P +
Sbjct: 765 GKADRWLFRELIERFEEQPFEATRT-WRCHVNLSQQSLEDADFINFIESMVAHSNIQPKQ 823

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +    +E +     E +  L   L  +G    +D FGT  +    L Y+P   +K N   
Sbjct: 824 LMFEVAEPIANDRFEETYRLFKELNHLGFGTAIDQFGTGFNSFRLLKYLPLTQIKVNRFW 883

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +           ++ S I +A+  +  + A  +  +     LT+   DY+Q      P
Sbjct: 884 VQNMLLDPTDAELVNSCIRLAQINKIEVTAVGVENDETRALLTKAQVDYLQGFACGKP 941


>gi|54298631|ref|YP_125000.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris]
 gi|53752416|emb|CAH13848.1| hypothetical protein lpp2695 [Legionella pneumophila str. Paris]
          Length = 835

 Score =  350 bits (898), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 140/538 (26%), Positives = 240/538 (44%), Gaps = 31/538 (5%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  D V T  +   IL        G              +  +         +  R++ E
Sbjct: 321 LNGDVVFTNDEGKIILNYWIKLFKGLP-----------VELLKEAQRIQKSNQNTRIEME 369

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              +       W+              +   G   DIT+ K +   +L    +D LT I 
Sbjct: 370 IEDKIYLFTLVWI---------DEFKQINIYGT--DITQLKNTQNAMLNLTRRDTLTQIA 418

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ F ++L   +      +     +++ID+D +K +ND LG   GD +L+++T R+   
Sbjct: 419 NRQYFEEKLIEKIYEHHLKEK-SLALLLIDLDNFKIVNDTLGHPTGDKLLMAVTNRMTRC 477

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D +ARL G+ F ++L  + N+      A  +   +  P    +  +T+TASIG A 
Sbjct: 478 LRANDFIARLGGDEFIVLL-DQCNTDTAVKVAEKIINVLDKPFQFDDYHMTITASIGIAI 536

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSE 719
           +  +   + ++LK A++AMY +K  G N    F  +    +      +K+D+ LA    E
Sbjct: 537 YPETSEIARDLLKYADIAMYQSKKTGKNKCTVFSKNLHYKENQRNEILKKDIELAALKRE 596

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           LY+ Y P I L D  IVG+EAL++W HP  G I  +EF+ IAE+   I  I+ + +E+  
Sbjct: 597 LYIDYQPQIDLSDNTIVGIEALLRWSHPTLGLILPTEFIPIAEQTGCIHIISQWFIEQTL 656

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            D   ++       I + IN++   L D    + +   + +   S S+I L  SE ++  
Sbjct: 657 LDYSQFQQL--NSNIKLSINVSLSQLNDMRFTKILCDSLLQNNLSKSKIILDISERMIAP 714

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIA 897
           +  +    L ++  IGI+++LD+F      L  L  +P D +K +  L+ G     K   
Sbjct: 715 HFIQISKKLKQIHHIGINISLDNFCCPQISLPELLSLPLDYLKVDQRLLIGIEGKIKLRK 774

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +L  II + K++   II K I      + +  +GC Y Q      P+  N +L L+K+
Sbjct: 775 LLSGIINLTKDLNIKIIQKGIETAEQHEVIKSLGCQYAQGYFYCKPVALNDLLPLIKK 832


>gi|156316955|ref|XP_001618013.1| hypothetical protein NEMVEDRAFT_v1g225592 [Nematostella vectensis]
 gi|156196974|gb|EDO25913.1| predicted protein [Nematostella vectensis]
          Length = 305

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 156/305 (51%), Gaps = 6/305 (1%)

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RS 702
           + L   ++ VT SIG A       T S++LK A++A+Y AK  G N ++ FR +     S
Sbjct: 1   MLLDGHQLQVTPSIGIALIPDHGDTPSDLLKRADIALYRAKDSGRNCIQLFRNTMQKAAS 60

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ ++ DL LA+   E  L + P +   + +I+G EAL++W HP  G  S + F+ I E
Sbjct: 61  ERLRMENDLRLALARGEFELHFQPQVDARNNQIIGTEALLRWMHPTLGMQSPALFIHILE 120

Query: 763 ELCMIKAINLFMLERIARDIISWRDQA--NMPPIFILINIASKDLLDNELCEGMQALISK 820
           E  +I  +  ++L            Q   +     + +NI+ +    N+  E ++  ++ 
Sbjct: 121 ESGLILEVGGWVLAEACHACAQLLQQGMVDATQFSLCVNISPRQFRQNDFVELVEGSLTS 180

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +   P  +KL  +E +V+ N + +   + RL+++G++  +DDFGT  S L+YL  +P D 
Sbjct: 181 SHLPPHMLKLEITEGIVIQNIDDTIAKMNRLKRLGVTFAMDDFGTGYSSLTYLKRLPVDV 240

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +           I+R+I+ MA+++   +IA+ +     ++ L + GC + Q  
Sbjct: 241 LKIDQSFVRDATLDANDAEIIRAIVAMARSLGLDMIAEGVEQTDQLEFLQQQGCHHYQGY 300

Query: 939 HVASP 943
             + P
Sbjct: 301 LFSRP 305


>gi|313905123|ref|ZP_07838492.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium cellulosolvens 6]
 gi|313470026|gb|EFR65359.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium cellulosolvens 6]
          Length = 1132

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 200/510 (39%), Gaps = 26/510 (5%)

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMS 503
           +      +   +H  + ++    +   +        +  +R+     +  ++    R + 
Sbjct: 57  LALTGGTFRKMVHPEEIEDVERDIWRQICTGTDMFDHVSYRICTRTGKIKYIEDFGRLVH 116

Query: 504 NSN-GDILRYIGIANDITEQKKSLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATD 561
               GD+        DI             ++  D LTG+P ++ FL    + L      
Sbjct: 117 LEEVGDVYYVFVSDRDI----------KYMSYDIDRLTGLPGQRRFLSYTESALKNCEKQ 166

Query: 562 DN-LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                   + I+I K+K  N   G+  GD +L  +   +  +      +AR S + F + 
Sbjct: 167 GGETEVAFLYINISKFKIFNVRFGMEAGDALLQDIAAVLR-ITFPGGYIARFSDDHFIVY 225

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + + +    +   + A+    +        E  +   IG        +        A+L+
Sbjct: 226 VENADLEKSLESLSEALDHLRS--------ETKIKVKIGIYRVRDYSVIPELACDLAKLS 277

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
               +     +VE +     R   V   + + +  A+EN  + + Y P++R +   + G 
Sbjct: 278 CDSIRGNPDKNVEEYTDEIGRKLEVHEYVLDHIDDAIENHYIKVYYQPVVRSISGALCGF 337

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W  P  G +  S+F+   EE   I  ++ +M+  I R+   + D    P + +  
Sbjct: 338 EALARWIDPTVGFLPPSDFVPALEESRQIHKLDCYMIREICRNYREYVDAN-EPVVPVSF 396

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++  D +  ++   ++  + +       I +  +ES+ + + +R    + R    G  +
Sbjct: 397 NLSIIDFIACDIGSIVEEAVEEFRVPREMINIEITESMFIQDAQRIGREIDRFHGRGYQV 456

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918
            +DDFG+  S L+ L    FD +K +   ++  T+K   IL S + MAK I    +A+ +
Sbjct: 457 WMDDFGSGYSSLNLLKDFTFDELKIDMGFLSSFTQKSKDILESTVRMAKKIGIQTLAEGV 516

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             E   + L  +GC+ +Q  +   P+ +  
Sbjct: 517 ETEEQFEFLRSIGCEKLQGYYFGKPMPYEE 546



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 78/200 (39%), Gaps = 5/200 (2%)

Query: 490  NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
               H +     P+   +G I+  IG   DI +Q +    +   A  D +TG+ N +  ++
Sbjct: 935  GILHNIACTKVPIY-RDGKIVGIIGYFVDIDKQNQINASLKRVASVDTVTGLANFRGLIE 993

Query: 550  RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
             +   ++           V+ +++++Y +  ++ G   GD++L  L   +    +    +
Sbjct: 994  NMGDYIEEFRRS-GADFVVVHLEVEEYVRFREIYGSDAGDELLRMLAGILLRCFRHAASI 1052

Query: 610  ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
             R     F I+   E +   +A     +++ I    ++ +   +  A+I    + ++   
Sbjct: 1053 GRFCEGEFFILYRYE-DQNDVATIVKNIKQEIFELHHVGDAVCSCFANITL-EYAAASED 1110

Query: 670  SSEMLKNAEL-AMYHAKHRG 688
               ++ N    A+   K   
Sbjct: 1111 PESLVVNLMQNAIMKRKRNN 1130



 Score = 39.5 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 456 IHINDRDNF------RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           I+  DR+ +      RTI +  +    G L   FR +  D  + WM      +  S+  +
Sbjct: 748 IYPEDRERYIAFSDPRTIRERVLSTGNGFLADYFRTKGKDGNYRWMTHTTLVIPKSDDQL 807

Query: 510 LRYI 513
              I
Sbjct: 808 YLLI 811


>gi|192361562|ref|YP_001984105.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190687727|gb|ACE85405.1| hipothetical sensory box/GGDEF family protein [Cellvibrio japonicus
           Ueda107]
          Length = 688

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 199/456 (43%), Gaps = 16/456 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E++   + +   A  D +T + NR +    ++ +L  +    ++    ++IDID+++ 
Sbjct: 232 INERRYMQDRLNYLATHDFVTRLHNRNALESHVSELLARTQLH-SINAAFLLIDIDRFRI 290

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +N+  G   GD++L      I  LL   D  ARL G++F ++   E     +A   +  R
Sbjct: 291 VNESCGCIAGDELLRQFADSITGLLARNDFFARLGGDKFAVVTHCEEADKGVALAQLIQR 350

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                     +++  + ASI     T   ++  +++  A+  +Y AK      + ++  +
Sbjct: 351 HLEQFTFQWEDKQFKLAASIACVPITRELVSYDQIMLAADEVIYVAKQEARGSIRTYDQA 410

Query: 699 SFRSDRVM----IKEDLCLAVENSELYLVYH-----PIIRLMDEEIVGLEALIQWDHPKW 749
           + RS            L  A+ N+     +      P  R  D   + LE L++   P+ 
Sbjct: 411 NQRSSLHRDSINWASRLIDALHNNLFRTYFQLIEYLPASRAEDIPKIRLEILLRLWSPQQ 470

Query: 750 G-NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +   +F+  AE L +I  ++ +++    + +  +    +   + + IN+++  + ++
Sbjct: 471 ERIVPPGDFIGPAERLHLIPELDKWVINHSLQLLAQYPRLFDHIEL-VSINLSALSMRES 529

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + +   I +    P +I    +E+  + N + +R  +  LR  G    LDDFG+  +
Sbjct: 530 LFADYVVGKIQQHGIPPHKICFEITETAAIVNMDTARHFMQTLRDQGCHFALDDFGSGFA 589

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             +YL  + FD +K +G  +      +   A+++SII MAK+++  +IA+ +      + 
Sbjct: 590 SYAYLHQLIFDKIKIDGIFVRDMDTDQAHYAMVKSIIEMAKSLDKEVIAEFVETPEVAQL 649

Query: 927 LTRMGCDYIQDSHVASP--LGFNSILKLLKERFPLV 960
           L  +G  + Q      P  L + ++ + L   + L 
Sbjct: 650 LRELGVSWGQGYFHHRPEELNYQALQRCLASSYGLT 685


>gi|217972377|ref|YP_002357128.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS223]
 gi|217497512|gb|ACK45705.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS223]
          Length = 768

 Score =  350 bits (897), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 105/441 (23%), Positives = 202/441 (45%), Gaps = 18/441 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    L      +     L   ++++DI  ++
Sbjct: 334 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQHL------ADLKHELAGAMVLLDIKHFR 384

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +LV   RR+ +L   PD+LARL G+ F ++         +       
Sbjct: 385 HINDIIGFANADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLL----KS 440

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++T   G      +      +++ AE+A+  A             
Sbjct: 441 LDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQG 500

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I  DL + +  ++LYLV+ P + L   +  G EALI+W HP  G I   E
Sbjct: 501 ADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  ++ ++L++  + +++W+ +     + + IN+++ DL+D  L   + +
Sbjct: 561 FIQLAENSGNIDIVSQWVLKQAIKQLVAWQQRG--MLLKLAINLSAHDLVDTRLPNQIAS 618

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L R R +G+S+ +DDFGT  S L+YL  +
Sbjct: 619 LLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKIL 678

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK + S +       + + I+ + I +   +  T++A+ +     ++ L  + CD 
Sbjct: 679 PVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVEILRNLNCDI 738

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL         + 
Sbjct: 739 IQGYVFSKPLKAAEFDLWFEA 759


>gi|209883269|ref|YP_002287126.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
 gi|209871465|gb|ACI91261.1| diguanylate cyclase/phosphodiesterase [Oligotropha carboxidovorans
           OM5]
          Length = 571

 Score =  350 bits (897), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 104/539 (19%), Positives = 212/539 (39%), Gaps = 16/539 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI--HINDRDNFRTI 467
            +   G   + WDIV D ++ + +I  +L             +   I  H + R      
Sbjct: 27  VLSCLGQATFTWDIVGDSLSWSANIEEVLPGVPVEALAWGSEFAKLIEPHPHVRREAVMG 86

Query: 468 LDSFVGYRRGRLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                  +    Q E+ +R        W+    R  + ++G      GI     E+    
Sbjct: 87  GSGQDQGQGVYYQIEYGIRARMSAPVIWVEETGRWFAAADGSPAYVRGILRLNNERHAHD 146

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   +  D LTG  NR   L          A+        M++ ID   ++N+  G  
Sbjct: 147 EQLRKLSQHDPLTGDLNRTH-LVAALAEALEEASRFRTSFAFMLLGIDHLARLNEAFGFD 205

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           V D+V+  +++R+   L+  D+L R SGN+FG+IL + +           +       + 
Sbjct: 206 VADEVICEVSQRLRARLRGGDVLGRFSGNKFGLILKNCSADEMQIAAERFLAGIRNEVVP 265

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                +++TASIG  S      T+ E +   + A+  AK R       +     R  +  
Sbjct: 266 TASGPVSLTASIGAISAPRYARTADEAMSRTQEALEAAKARRHGSFLVWHPDVERDAQRR 325

Query: 707 ----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               + +++  A+  + + + + P++     +    E L++          + + + +AE
Sbjct: 326 ANIRVTDEIVTALNENRVVMAFEPVVETASRKPAFYECLVRLRQSGGEASLAPDIVPVAE 385

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +L +I+ ++  +LE +  ++         P + + +NI+     D +    +  L     
Sbjct: 386 KLGLIRLVDHRVLELVVDELAR------SPQVELSLNISPDTTTDPDWWASIDTLFHAHP 439

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+ +  +E+V + + +  R  + RL+  G  + +DDFG   +    L  +  D VK
Sbjct: 440 GVAERMIVEITETVAIQDIDDVRGFVTRLKDFGSRIAIDDFGAGYTSFRNLRKLGVDIVK 499

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +G+ +     +    A +++++ +A  +    +A+ +  E     L   GCDYIQ   
Sbjct: 500 IDGAFVQNIARSADDRAFVQTMVDLAHRLGLKTVAEWVQDEEAAALLQGWGCDYIQGRL 558


>gi|327479033|gb|AEA82343.1| c-di-GMP phosphodiesterase A-related protein [Pseudomonas stutzeri
           DSM 4166]
          Length = 788

 Score =  350 bits (897), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 205/467 (43%), Gaps = 16/467 (3%)

Query: 503 SNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  G+I R       + ++   +L+ I   ++ D+LT I NR  F   L   +      
Sbjct: 306 PSDGGEIGRLTVNMKTLHDRSTAALQRIQEISWTDSLTQISNRAHF-GMLANAMYEQCLQ 364

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP--------DILARLS 613
           ++ R +++ ID+D +K++ND  G   GD +L    +R   LL+            LARLS
Sbjct: 365 EDKRLSLLFIDLDNFKQVNDRHGHDAGDALLRLFAQRAQTLLERHRQQHPHTYSALARLS 424

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I+L+S+     +     ++         L ER   V+ SIG A +     + +++
Sbjct: 425 GDEFAILLLSDAEPG-LDALCDSLLGLCRGGFRLEERTYPVSLSIGTACYPDDADSITQL 483

Query: 674 LKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L  A+ AMY AK  G     +F            +I++ L     +++L LVY P +   
Sbjct: 484 LTRADTAMYQAKAEGKCMAVAFSNELEQRNERIRLIEDQLRALDGDNQLRLVYMPALN-R 542

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D  +V  E L++W  P  G +S +EF+ IAE   +   I+ ++++    +          
Sbjct: 543 DGAVVSCEVLLRWHSPVLGTVSPAEFIPIAERAGLFPKIDSWVIDHALAEYPQLVRLFGE 602

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + IN++S  L D+ +C  +    +    +P RI++  +E+      + +  ++  +
Sbjct: 603 QVI-LAINVSSAQLADDRICRYLAERAAHHGVAPGRIEIELTETYAAELNKDTMAVVQAI 661

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910
           R+ G  + +DDFG   + +  L   P DT+K + +++T  T       L +++       
Sbjct: 662 RRAGFRVAIDDFGVGYTSIQQLLEYPADTIKLDMAIITRLTRPDMQHSLSALVAFCHAQG 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             + A+ +        L + GCD  Q   ++ P    ++   +  R 
Sbjct: 722 KRVNAEGVDDMEKQSALLQAGCDLFQGYLISPPRALPALEDWMAVRN 768


>gi|148252697|ref|YP_001237282.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
 gi|146404870|gb|ABQ33376.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1]
          Length = 650

 Score =  350 bits (897), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/448 (23%), Positives = 204/448 (45%), Gaps = 16/448 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + + +      D+LTG+ NR  F       +  +A         ++ D+D +K IND  G
Sbjct: 210 ANQALERLVRMDSLTGLANRSHF-----RSVAGAACAAGTGVAFLLFDVDNFKTINDTRG 264

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD VL +L   +       D+  RL G+ F ++L   N   +       +  ++  P
Sbjct: 265 HDAGDRVLQTLAALLCSACGADDLPVRLGGDEFIVVLQGANADRRAVALGERLMSALLRP 324

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702
           + +  + +TV+ SIG A+  +  I   E+   A+ A+Y AK  G   +  F        +
Sbjct: 325 VLIAGQPLTVSCSIGIAAHAAGAIDLEELSARADAALYRAKEDGRACMRVFDAQMQSALT 384

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            +  +  +L  A+   EL++ + P + +  +EI+G EAL++W+H   G I   + +  A 
Sbjct: 385 LQRRLDFELAAALARRELHVEFQPQVAMATQEIIGFEALLRWNHACAGLIPPPDIVSAAI 444

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            L +   +  F+ ER+   + +  D+   P I + IN++ ++   +   + ++ +  +  
Sbjct: 445 RLRLSAQLTEFVGERVCAFLRAL-DRKKAPQIRVSINVSPREFPIHSPAQTLKTVSERYG 503

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P RI++  +E   M +P+R    L  + + G +L +DDFG   S ++ L  +  DT+K
Sbjct: 504 VDPKRIEIEVTE-EAMFDPKRCADELKLIDQYGFALAIDDFGVGHSSIANLMAVEIDTIK 562

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S + G     +   ++ +I  +A  +   IIA+ +  E D + L  +GC Y Q    
Sbjct: 563 IDRSFIHGIAGNRRDQQLVAAITAVALPLGHRIIAEGVESEADAECLRMLGCSYGQGWLY 622

Query: 941 ASPLGFNSILKLLKERF-----PLVKNT 963
             P+  +  +  L +R      PL ++ 
Sbjct: 623 GKPMKEDDAIGWLVQRRAAAIEPLPRSA 650


>gi|172057736|ref|YP_001814196.1| diguanylate cyclase/phosphodiesterase [Exiguobacterium sibiricum
           255-15]
 gi|171990257|gb|ACB61179.1| diguanylate cyclase/phosphodiesterase [Exiguobacterium sibiricum
           255-15]
          Length = 610

 Score =  350 bits (897), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/434 (25%), Positives = 205/434 (47%), Gaps = 19/434 (4%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 AF D++T + NR  F+  + T     A D      + +ID+D +K +ND  G  
Sbjct: 191 ARFKEQAFFDSVTELANRSFFV--IETEKKAVAGD-----IICLIDLDDFKTVNDAFGYR 243

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  L  + +R+        I+A+ SG+ F +   S             +  SI+  + 
Sbjct: 244 TGDRTLHIIGKRLMTRF-SDCIVAKASGSAFLLHATSAQPDQ----LCDEILASISERVQ 298

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           +  ++I VTASIG +    +  +   ++ +AE+A++ AK    N          + R   
Sbjct: 299 IDFKQINVTASIGVSFV--NGESIDHVINDAEIALFTAKSNRKNTFAITDQVTQNERKRA 356

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +  DL  A  + + ++++ P +   +  I G EAL++W+HPK+G IS  EF+ +AE  
Sbjct: 357 MQLTRDLYDADLDRDFFVLFQPQVSATNHCITGAEALVRWNHPKYGLISPLEFIPLAERT 416

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I+ +  +++ +       W +Q    PI I +N++   L   +  + +  ++  T + 
Sbjct: 417 RFIETLGGWVMRKACLQGQQWLEQ-GRKPITIAVNVSPSQLRQEDFTKKVLEILRSTGFP 475

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +++  +E + +    +    L  L   GI + LDDFGT  S +  L  +PFD +K  
Sbjct: 476 PYLLEIEMTEHIFIEGMAQIIETLNELHLHGIRIALDDFGTGFSSMQTLVELPFDQLKIP 535

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             ++     +E++ AI++ II +   ++ TI+A+ I   ++ + LT +GC  +Q      
Sbjct: 536 KEIVRAAIDSEEKRAIVKMIIQLGDRLKMTIVAEGIEAMVEAELLTGLGCQTLQGYLFHK 595

Query: 943 PLGFNSILKLLKER 956
           PL   S+  LL ++
Sbjct: 596 PLEALSVEPLLDQQ 609


>gi|166711872|ref|ZP_02243079.1| hypothetical protein Xoryp_10570 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 618

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 107/480 (22%), Positives = 204/480 (42%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  I   P    +   +  +    D+   +  +E +  N ++D  TG+P
Sbjct: 126 LKLRDGHSIGTLCAIGTSPREGLDAAAITQLEGLRDLAVLR--VENLRSNTYRDGPTGLP 183

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + L T L  S  D     T + ID+   D  + +   LG    D  + +  RR+
Sbjct: 184 NRSRFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRRL 241

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    IL RL    F     ++    ++A     + K+ A P+       T  ASIG
Sbjct: 242 TASLPGGTILYRLDPTTF--CFQAQAEGQRLATLCTKVSKAFAEPLEHQGIPHTAVASIG 299

Query: 660 FASWTSSKITSS---EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             S  SS   +     +  + ++A            E     + R+   ++         
Sbjct: 300 AVSLQSSYGAADIIRSLTTSVDIARERCMPWS--MYERKHDVAQRNTFRLLAALPAALDS 357

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N++L L Y P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 358 NNQLRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPMAEKTALINHITAWVID 417

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL      + ++  + +    P R+++ F+ES 
Sbjct: 418 NGIAQAARWQQQGLD--FNLALNVSAADLDRPGFADLLRRGLDRYKLDPRRLEIEFTESA 475

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +PE+    L  +  +G+ + +DDFGT  S  SYL  +P   +K + S +    +   
Sbjct: 476 MIRHPEQLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNRT 535

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I        L   GCD  Q   +A P+   ++   L+
Sbjct: 536 DRTLVPAMIQLGHSLGQRVVAEGIESAEAYAHLRAWGCDEGQGYWIAKPMPAAALETWLE 595


>gi|15605874|ref|NP_213251.1| hypothetical protein aq_367 [Aquifex aeolicus VF5]
 gi|2983047|gb|AAC06656.1| hypothetical protein aq_367 [Aquifex aeolicus VF5]
          Length = 850

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 209/444 (47%), Gaps = 20/444 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  IG A  I+     +E     A +D LT + N+++F + L   L+ +   +      
Sbjct: 416 LVNVIGSAKAISSYVNEIEFY---AMRDPLTFLYNQRTFWELLNYELERANRFERSLSL- 471

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D +K IND  G AVGD VL  + R I E  +  D+ AR  G+ F +I+I  N+  
Sbjct: 472 LLLDLDNFKVINDTYGHAVGDRVLREVARIISEKKRKADVAARYGGDEFAVIVIGANS-N 530

Query: 629 KIADFAIAMRKSIAM-PINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +  + A  ++ +I    I + E E ++   SIG AS+    +TS ++   A+  +  AK 
Sbjct: 531 QALNLARRLKDAIESLSIPVSESETVSPRVSIGIASYPEHALTSRDLFIIADSMLRKAKE 590

Query: 687 RGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G + +    +   +  RV + +    +  A+    +   + PI+ L   E+   E L++
Sbjct: 591 EGRSKIRVPTIEDLQMSRVELTKKSMLVLDALNKRLIKPFFQPIVELKSGELFANEVLMR 650

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I +SEF+  AE L +I  ++L + E   + ++  +        ++ +N++S+
Sbjct: 651 IGKEN---IPASEFIEAAENLGVIVRMDLILYEETLKKLVEEQ-----YDKYVFMNLSSR 702

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   +  + +  ++  + + P++I    +E   + N +  +  L  L+++GI   +DDF
Sbjct: 703 ALTSEDFLKNILRIVENSGFDPAKIVFELTERESVKNIDLVKRFLEELKEVGIKFAIDDF 762

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S   YL  IP D VK  G  + G  +  +    + SI+ +AK +    +A+ I  E
Sbjct: 763 GSGYSSFHYLKKIPVDFVKIEGEFVKGALTDWRDKTFIESIVTLAKGMHIRTVAEFIENE 822

Query: 922 IDIKELTRMGCDYIQDSHVASPLG 945
              + +  +G DY Q  +   P  
Sbjct: 823 EIKEIMKEIGVDYGQGYYFGKPSP 846


>gi|325262126|ref|ZP_08128864.1| putative sensory box sensor/GGDEF/EAL domain protein [Clostridium
           sp. D5]
 gi|324033580|gb|EGB94857.1| putative sensory box sensor/GGDEF/EAL domain protein [Clostridium
           sp. D5]
          Length = 1327

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 98/473 (20%), Positives = 193/473 (40%), Gaps = 21/473 (4%)

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQK-KSLEGILCNAF-QDNLTGIPNRQSFLDR 550
            W+ +    +    G     I I+ +I E K +  E     A   ++LTG+  +  F   
Sbjct: 8   CWVELSAGRIEWP-GQGTCSIIISRNIPEHKIQETEKPYRVAEGINSLTGLYKKDRFFQA 66

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
               L            ++ +D++ +K  N+  G   GD  L+++ + + E+ K    +A
Sbjct: 67  AEDYL---KDTPAACFCLVAVDVEHFKLFNEWYGKKAGDAFLLNIAKYLNEIRKESGGVA 123

Query: 611 -RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
             +  + F I+L    +  ++      +   I            + A  G   +T   + 
Sbjct: 124 GYMGEDDFCILLPG--DYAQLEHLKNRILGYIRQ---YKGNAGFLPA-FGVYEFTDLLVP 177

Query: 670 SSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
            S M   A +AM   K             +     +  ++  ++   +E+ E      P 
Sbjct: 178 VSMMYDRAVIAMSFVKGNYADRMCRYDALMMQEMEENHVMLSEVQKGLESGEFTFYVQPK 237

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             +    IVG E+L++W HP+ G ++  EF+ + E    I  +++++  ++   +  W D
Sbjct: 238 CNMATGRIVGAESLVRWLHPQRGMVTPGEFIPLLERSGFIAKLDMYIWNKVCTYLRKWLD 297

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +     + + +N++  D+   ++ E    L+ K       +++  +ES      ++   +
Sbjct: 298 EGKTL-LPVSVNVSRVDIYTLDVVEYFINLVRKYSIPRYLLEIEITESAYAEEYQKITAV 356

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSII 903
             +LR  G ++ +DDFG+  S L+ L  I  D +K +   +    EK       IL +II
Sbjct: 357 AEQLRNAGFTVLMDDFGSGYSSLNMLKDINVDVLKIDVKFL-DMNEKSADKGLGILEAII 415

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            MA  +   IIA+ +  E  I+ L  MGC Y Q  +   PL       LL+++
Sbjct: 416 RMAALMGLRIIAEGVETEEQIRFLVEMGCLYGQGYYFYQPLPIERYENLLEKQ 468



 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 20/279 (7%)

Query: 433  DIATILGLASGSMHGPIRNWL--PYIHI---------NDRDNFRTILDSFVGYRRGRLQY 481
            +     G +   +      +     I            D++                 Q 
Sbjct: 1044 NWMGETGCSQKQLLEGATEYFCSELILPPYQELFRTFTDKNRMYQAYRDGKVMENLDYQR 1103

Query: 482  EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             +R         WM + +    +   D +       DI  QKK    +   A  D +TG+
Sbjct: 1104 MYR-----GVPCWMRMLVNYTQSEENDEVYAYIFVTDIDAQKKQELHLAKMAETDVMTGL 1158

Query: 542  PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
             NR++   ++   L            V++ D+D +K  NDV G A GD ++     ++  
Sbjct: 1159 YNRRTAKSKIEGYL---KNHPQCSAAVIMFDMDNFKTANDVFGHAYGDSMIRESAEKLNS 1215

Query: 602  LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
              +  DI+ R+ G+ F ++         + +    +   +A+     E+ I  + S G+A
Sbjct: 1216 FFREIDIICRMGGDEFLVLCRDIK-EEAVNEKMRRILSDMAVTYRTGEKAIKFSVSAGYA 1274

Query: 662  SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                   T  E+ + A++A++ AK  G +    +  S  
Sbjct: 1275 MVPDQGTTFEELYRKADIALFTAKMNGKSTFLKYDSSMK 1313



 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 428 VTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +  +     I G     +     N ++  +H +DR+     +  ++         E+R+R
Sbjct: 645 LYISNRFLEIFGYTREEIRNLFGNKFMNMVHPDDREQVEADV-CYLENSSCASNIEYRMR 703

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA--FQD 536
           A    + W+I + R         +   G+  ++TE  +    +        D
Sbjct: 704 AKKG-YIWVIDQSR--YTEYSGSIFIQGVVLNVTEMVELRNMMKIIMGHTHD 752



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 23/162 (14%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-----TPDIATILGLASGSMHGPIRN 451
               ++  G++    +  +    W+W++    +          +     + + S H  I+N
Sbjct: 865  EHDLWLSGQKMKSILRQAKISSWEWNMKNHTLNLGNIQENGRVIHDF-IKTDSDHAVIQN 923

Query: 452  WLPYIH-----INDRDN-FRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +   +       ++ +   R  L+      +R   + E  +   D    W+ +    + +
Sbjct: 924  FPEVVMGKGIIPDEYEKKLRRYLEDMYTGGKRAGSRSEIPLCLKDRSLCWVRMACELVDD 983

Query: 505  SNGDILRYIGIANDITEQK----------KSLEGILCNAFQD 536
             NG  +  IG   DIT++K          K+LE     +  D
Sbjct: 984  ENGSPVVAIGYYYDITKEKEERIQSRENMKTLEIFRSQSLYD 1025



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 3/104 (2%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +        + G     +          ++ +D++ F  I       R      + R   
Sbjct: 520 LKVNEYYYKVTGSNPIDLEEQRIYIQNRVYEDDQEEFLEIFKRADHNRLSGGCGQIRRIC 579

Query: 488 ADNQFHWMIIRIRPMSN-SNGDILRYIGIANDITEQKKSLEGIL 530
            +    W+ +    +    +G +  Y G   D+TEQ+K  +   
Sbjct: 580 DNGSVIWVQLHAFFLKAQEDGRL--YYGAVTDVTEQRKREQNQE 621


>gi|330971361|gb|EGH71427.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 519

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/451 (23%), Positives = 207/451 (45%), Gaps = 26/451 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++       A  D+L+G+ NR+ F+D ++  L       N    VM+ID+D +K IND
Sbjct: 76  LQRTQSHTETLAKYDSLSGLINRRIFMDIISDQL-----GHNRPVVVMLIDLDNFKIIND 130

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G + GD VL+ ++RR+ E+ +    +A RL G+ F +  +S  +   ++  A +   S
Sbjct: 131 QHGHSAGDVVLIRVSRRLEEIAEVHGGIAVRLGGDEFCLTFLSHKSENTLSYIAESTIVS 190

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P+        ++ +IG +        +  +L  A+ AMY   + G +    +     
Sbjct: 191 LNEPMLDDLSSTQLSVTIGISRSWIDAQEAFALLHCADTAMYRGGNYGRSVYNFYDSEYE 250

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       +   L  A+E  E+   + PI+ L  ++IVG E L +W          ++F+
Sbjct: 251 KQRCAQTDLDFCLQQAIEREEVVPFFQPIVMLPSQDIVGFEILARWVKSDGSIGMPTDFI 310

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E L +I A+   ++++  R    W        + + +N+++  ++D    E +   +
Sbjct: 311 PVLERLGLIPAMTRSLVKQACRAAQVW-----DKQLHLSLNVSAAMIVDELFPEQLLDQL 365

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K  +  +R ++  +E  ++GN E ++  + +L   GI+++LDDFGT  S L +L  +  
Sbjct: 366 MKEKFPFNRFEVEITEEALVGNLEAAQKNIKKLHAHGITVSLDDFGTGYSGLYHLTRLSI 425

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI----KELTRMGCDY 934
           D +K + S         + ++ +I+ MA++++  + A+ I  E+        L   GC Y
Sbjct: 426 DKIKIDRSFFETGETDHLPMVEAILGMARSLKMKVTAEGIE-EVHFPHLPLWLADNGCHY 484

Query: 935 IQDSHVASPL--------GFNSILKLLKERF 957
            Q      P           NS+  +LKE F
Sbjct: 485 AQGFFYGRPQACIETAAKSLNSLEYVLKEHF 515


>gi|188576416|ref|YP_001913345.1| Putative signal protein with GAF, GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520868|gb|ACD58813.1| Putative signal protein with GAF, GGDEF and EAL domains
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 595

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 110/481 (22%), Positives = 206/481 (42%), Gaps = 22/481 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           ++  D      +  I   P    + G I +  G   D+   +  +E +  N ++D  TG+
Sbjct: 103 LKLRDGHSIGTLCAIGTSPREGLDAGAITQLEG-LRDLAVLR--VENLRSNTYRDGPTGL 159

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRR 598
           PNR  F + L T L  S  D     T + ID+   D  + +   LG    D  + +  RR
Sbjct: 160 PNRSRFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRR 217

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L    IL RL    FG +  +E    ++A     + K+   P+       T  ASI
Sbjct: 218 LTAYLPGGTILYRLDPTTFGFLAQAEG--QRLATLCTKVSKAFTEPLEHQGIPHTAVASI 275

Query: 659 GFASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
           G  S      +  T   +  + ++A            E     + R+   ++        
Sbjct: 276 GAVSLQSSYGAADTIRSLTTSVDIARERCMPWS--MYERKHDVAQRNTFRLLAALPAALD 333

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N++L L Y P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  +++
Sbjct: 334 SNNQLRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPMAEKTALINRITAWVI 393

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +        W+ Q       + +N+++ DL      + +Q  + +    P R+++ F+ES
Sbjct: 394 DNGIAQAARWQQQGLD--FNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTES 451

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            ++ +PE     L  +  +G+ + +DDFGT  S  SYL  +P   +K + S +    +  
Sbjct: 452 AMIRHPEHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNR 511

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               ++ ++I ++ ++   ++A+ I        L   GC+  Q   +A P+   ++   L
Sbjct: 512 TDRTLVPAMIQLSHSLGQRVVAEGIESAEAYAHLRAWGCNEGQGYWIAKPMPAAALETWL 571

Query: 954 K 954
           +
Sbjct: 572 E 572


>gi|328948269|ref|YP_004365606.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
 gi|328448593|gb|AEB14309.1| diguanylate cyclase/phosphodiesterase [Treponema succinifaciens DSM
           2489]
          Length = 470

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 95/438 (21%), Positives = 188/438 (42%), Gaps = 16/438 (3%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    DN+TG+P    F      +L  +  ++     ++ ++ D ++ IND  GI 
Sbjct: 30  HKKSYMIEHDNITGLPAYSHFEFDAKKLLKNALPNE---YMILSLNADNFRIINDTYGIL 86

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS--IAMP 644
            G+++L  L +         + + R   + F  ++ +      I +    M     I   
Sbjct: 87  CGNEILKLLGKHFASQCGKNEFVCRFYADNFVFLIKNMEFFWDIEERVYNMTNVDNIVKK 146

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFR 701
               + + T +ASI              M+  A LA    K+          +  +    
Sbjct: 147 YLPPKYQFTFSASIYRIENPLD--DIESMISKANLAQKLYKNHFATHRVIEYTSELKESY 204

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S    I   +  A EN E  + Y P  +  DE I+G EALI+W++P+ G +  ++F+ + 
Sbjct: 205 SWNREITLSMEEAFENKEFEVFYQPKFKFEDETIIGAEALIRWNNPRKGFLPPAKFIPLF 264

Query: 762 EELCMIKAINLFMLERIARDIISWRD--QANMPPIFILINIASKDLLDNELCEGMQALIS 819
           E+   I+ I+ F+L  +   +  W    ++   P+ I  N++  ++ +  L   ++ +  
Sbjct: 265 EDNGFIEKIDKFVLNNVCNFLEEWNKTKESKSNPLTISFNLSRYNIYNPNLISDLKQISR 324

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 ++I++  +E +++ NP R   ++  ++K G S+++DDFG   S L+ L  +P D
Sbjct: 325 SYDIGDNKIEVELTERIMVDNPNRLIKIMDEIKKAGFSVSVDDFGAGYSSLNLLKNMPAD 384

Query: 880 TVKFNGSLMT----GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +K +   ++       +K   I+ S+I MAK +  T +A+ +  +   + L   GCD  
Sbjct: 385 VIKLDKDFLSSQEENKNQKERIIITSVIEMAKKLNITTVAEGVETKDQCEMLKTSGCDIA 444

Query: 936 QDSHVASPLGFNSILKLL 953
           Q  + A P+      + L
Sbjct: 445 QGFYYAKPMQEKLFKEFL 462


>gi|300024279|ref|YP_003756890.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526100|gb|ADJ24569.1| diguanylate cyclase/phosphodiesterase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 585

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 104/553 (18%), Positives = 220/553 (39%), Gaps = 23/553 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    +  + W++V  R+    + A ILG+   +       +   I   +  +   +  
Sbjct: 36  ILSSIEETAYAWNLVSGRIEWGSNAAAILGVGDLARIATGAAYHALIAPENLKDRLQVFS 95

Query: 470 SFVGYRRGR---LQYEFRVRAADNQFHW----MIIRIRPMSNSNGDILRYIGIANDITEQ 522
             V   R R    + ++R+        W    +    R    ++G  +   G+   I + 
Sbjct: 96  GGVATDRVRGVPYRVQYRI-TPGGPRSWKTIRVEDHGRWWPGADGHPIHARGVIRIIDDH 154

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
               +  L     D LTG  NR    + L ++L     +       +++ ++    IND 
Sbjct: 155 YLEQQRQLVRNDFDELTGQLNRIRLTEALGSVLGRIEREPQ-SCGFLMVSVNNLAVINDT 213

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            GIA GD+ +  + RRI   L+  DI+ R + N+FGII++       +   A    K + 
Sbjct: 214 FGIATGDEAISEVARRIRGKLRGGDIIGRYASNKFGIIMMKCG-PEALRVAAERFLKVVR 272

Query: 643 MP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---- 697
              I     +++ T SIG         +  + +  A  A+  A+ +  +    +      
Sbjct: 273 DSTIKTSAGQLSATISIGAVVIPHQANSVQDAVNFALRALDAARSQRIDCFVLYEPLPGG 332

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S R     I  ++  A++++ + LV  P++     +    E L++ + P    + + EF
Sbjct: 333 ESVRVRNRTIANNVIEALDDNRMRLVLQPMVSAKSGKAEIYECLLRMEKPDGQIVPAGEF 392

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+L + + I+   LE     +           + + +N++     D E    ++ L
Sbjct: 393 VPVAEQLGLSRLIDRRALELTIALLKKHH------DLVLSLNVSGLTCSDKEWIAALRRL 446

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                   SR+ +  +E+V + + +++   +  L++ G  + +DDFG   +    L  + 
Sbjct: 447 SDGRKDILSRLIVEITETVAIEDLDQTINFVDTLKEFGCRVAIDDFGAGYTSFKNLKLLN 506

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK +G  +            ++++I +A+      +A+ +  E  +K LT  G D++
Sbjct: 507 VDIVKIDGVFVKNLANDSSDRIFIKTMIDLARIFGMETVAEWVGDEHSVKHLTDAGIDFM 566

Query: 936 QDSHVASPLGFNS 948
           Q  +   P+    
Sbjct: 567 QGFYYGLPIDAAD 579


>gi|222107168|ref|YP_002547959.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221738347|gb|ACM39243.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 629

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 202/441 (45%), Gaps = 14/441 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++  ++     A+ D LTG+PNR  F + +          +     ++++D+D  K++N
Sbjct: 159 ERELRMKERRRLAYTDVLTGLPNRTGFNEAVINE-----DVERNPWGLLLVDLDNLKQVN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GDD++ ++  R+   +   D   RL G+ F +I+    + + +   A  +   
Sbjct: 214 DTFGHQAGDDLIRTVGLRLKA-MTDSDTAFRLGGDEFAVIVRGV-DCVDLGYHAAHVLAV 271

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P     + +    +IG A    +  +  ++ +NA+ A+Y AK R       + V S 
Sbjct: 272 LKEPCICAGQTVYPAGTIGGAVA-RNGQSVDDVRQNADFALYEAKERCRGQFVEYSVGSV 330

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +     +  + +  A+    +   Y P++ L    +VG EAL +        IS+S F 
Sbjct: 331 STIARRFRSFQQVSEALREQRIETYYQPVVDLASGSLVGFEALSRLASRNGDIISASHFH 390

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
               ++ + +A+   +LE +ARD   W D        I +N+++ D LD  L E +   +
Sbjct: 391 EATSDVHLARALTACVLENVARDARDWLDSGLEFG-RIGLNVSAGDFLDGSLTERIVGAM 449

Query: 819 SKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            K      RI +  +ES+ +GN ER     + +LR+ G+ + LDDFGT  + L++L  +P
Sbjct: 450 DKVGVGVDRIVVELTESIYLGNRERNVVDQIKQLRQAGMLVALDDFGTGFASLTHLLTVP 509

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    E+  A  I+  ++ ++  +   +IA+ I  +     L R+GC+  
Sbjct: 510 LDIIKIDRSFIARLLEEEPASVIVGGLLSISDRLNFRVIAEGIETQEQRDLLLRLGCEEG 569

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    +  +       +L+ +
Sbjct: 570 QGYLFSKAVDRKEAAAMLRRK 590


>gi|114562202|ref|YP_749715.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333495|gb|ABI70877.1| diguanylate cyclase/phosphodiesterase [Shewanella frigidimarina
           NCIMB 400]
          Length = 500

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 204/440 (46%), Gaps = 15/440 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I       +  L +  +D LTG+ NR  F  ++       +        ++++DI +++ 
Sbjct: 60  INVLHHLHQSSLFSTERDKLTGLANRVGFKRKM------LSKMPISEGMLVLVDIRQFRF 113

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND+ G   GD +L +  +RI  L      ++R++GN F +         ++      ++
Sbjct: 114 VNDLFGFLFGDKLLKAFAKRIDNLNCKAQFISRMNGNEFLLFFQQPLTIEQLQT----IK 169

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRV 697
             +  P  + ++ I++   +G  S        S ML+  +LA+  AK             
Sbjct: 170 NDLQSPFEIEQQPISIKMQLGVLSLNEHHADVSLMLRRLDLALKKAKALKQPIAFYDQDD 229

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              +   ++I   L   ++  +L++V+ P + +       +EALI+W H   G IS +EF
Sbjct: 230 DKAQYRELLIINGLPKGLKQGQLFMVFQPKLDIKSGRCKQVEALIRWQHEGLGLISPNEF 289

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  MI  ++ ++L+ +      WR+        + IN++S DL +  L   +   
Sbjct: 290 IPLAEQTGMIDILSSWVLDNVLAQQAKWRNMGVYVN--VAINLSSTDLDNPNLAADVATK 347

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+ L     I +  +ESV+M + E++ + L +LR IG+ L +DDFGT  S L+YL ++P
Sbjct: 348 LSQYLVPAETITIEITESVLMKSLEQTIVTLNQLRDIGVKLAIDDFGTGHSSLAYLRHLP 407

Query: 878 FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D VK + + +    ++     I+++ I +AKN+   +  + +  +  +  L   G D I
Sbjct: 408 VDEVKIDKAFLDEFETSHAAKQIVKTSIELAKNLGFEVTVEGVESKSVLDALHLFGVDTI 467

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + A P   +    L  +
Sbjct: 468 QGDYFAKPSTASEFEHLYPQ 487


>gi|291280232|ref|YP_003497067.1| hypothetical protein DEFDS_1856 [Deferribacter desulfuricans SSM1]
 gi|290754934|dbj|BAI81311.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1126

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/553 (18%), Positives = 206/553 (37%), Gaps = 15/553 (2%)

Query: 409  LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIH-INDRDNFRT 466
             A+  S D V   D     +      A I G     + G   + +    H      NF  
Sbjct: 584  FALNNSFDFVVIMDEDFHILYINDSTAKIFGWDKEDIIGKHHSIFSSKTHTKEFAKNFYK 643

Query: 467  ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
             L                 + AD +       I P     G+I  YI I  D++EQ K  
Sbjct: 644  TL-----QSGNVFSDFIVYKTADGKLIESYTVITPYF-VKGEIKYYIAIGKDVSEQLKLK 697

Query: 527  EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
            + I        +TG+P +  F++ +   L     ++     +++++       + +L   
Sbjct: 698  KEIEKLTKYSPITGLPLKDYFIEIVNNYLSEVKKENKT--ALVLLEPVNIYAASHILTKE 755

Query: 587  VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
              + +L  +  R+   +K  DIL     N FG+++ +      I      + K +     
Sbjct: 756  EVEKLLNVIKSRLESSVKSTDILGMFQENIFGLLMKNIRLKEDIFSIMDRVFKELEEEYV 815

Query: 647  LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-SDRV 705
            +  + + +    G   +  +   +  +LKN+ +A+   +          +    +     
Sbjct: 816  IDNKTVKLEFYSGITFYPDNGNNAERLLKNSFIALKEGQQLNKKINFFDKFQEEKLVHSF 875

Query: 706  MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             I + L  A +N+E    + P +      I G E L++W       I   +F+ + E   
Sbjct: 876  NIFKKLHEAFKNNEFVPFFQPYVDSKTLSIEGAELLLRWQ-KDGEIIPPGKFIHVLEHSH 934

Query: 766  MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +I  + + M+E +   + +   +     + I INI+      +   E    L+S      
Sbjct: 935  LIGDVEIKMVEHVLEVLNNRLSKKLKI-VPISINISPLSFSSDVFLEKFNTLLSSNKNLA 993

Query: 826  SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
              I +   E + + + E+   LL  L+++GI  +LDDFGT  S L+Y+  +P D +K + 
Sbjct: 994  KYIIIEIVERLFINDFEKMNNLLTSLKELGIQFSLDDFGTGYSSLNYISNLPIDKIKIDI 1053

Query: 886  SLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            +        +   +++++I   A  +    IA+ +  E  +  L R+  + +Q      P
Sbjct: 1054 TFTRNIEFDKKVLSLVKTIKSFADELGLKTIAEGVENENQLNILKRLKINQLQGYLFYKP 1113

Query: 944  LGFNSILKLLKER 956
            +   S   L    
Sbjct: 1114 MDEISFWNLFDSY 1126



 Score = 67.3 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 60/195 (30%), Gaps = 23/195 (11%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFR 465
            S+A   + +     D     +     +  I G +   + G     +          +  
Sbjct: 287 LSIAANKAYEWYLVTDSEGKIIYVNNAVELISGYSREELIGKKPNIFKSGEVP---HHVY 343

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L   V   +   +Y F  +  D +  ++   I P+   N  ++R + IA DITE+   
Sbjct: 344 KNLWLDVKSSKE-FEYTFINKRKDGKLFYLKSVIVPIL-ENNKVIRIVNIARDITEEVYQ 401

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +        D      N    L  +  ++  ++  + L         D    ++  LG 
Sbjct: 402 KKKYERL--NDA----YN---LLSYVNRLIVRASDINEL--------FDNLLNVSTTLGK 444

Query: 586 AVGDDVLVSLTRRIG 600
                +L      + 
Sbjct: 445 DSYGLILKFYGDYLR 459


>gi|298291183|ref|YP_003693122.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Starkeya novella DSM 506]
 gi|296927694|gb|ADH88503.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Starkeya novella DSM 506]
          Length = 699

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/462 (22%), Positives = 205/462 (44%), Gaps = 18/462 (3%)

Query: 503 SNSNGDILRYIGIANDI--------TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
            +  GD+ R      D         T ++K+       A  D +TG+PNR +F   L + 
Sbjct: 236 KDEIGDLARACVAFRDSLVSLSIAETAREKAELEREHVAGHDLVTGLPNRATFTSLLGSA 295

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           LD S  + +    VM +  D  + + ++ G AV D+++  + RR+  +    ++ ARL G
Sbjct: 296 LDRSGQNASTYVLVMAV--DGLRSVAELHGAAVRDEMVREIARRLK-VEAPQEVTARLEG 352

Query: 615 NRFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
             FG+    S  +S      A  + +++  PI +    + +   IG ++  +   ++SE+
Sbjct: 353 GLFGVFTAGSSGSSAGAKRLAGRLLEALDRPIVVGPTTLELRTRIGISTHPADARSASEL 412

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           ++ AELA+          +   R+         ++ D+  AV    +   + P++     
Sbjct: 413 VRLAELALSRGAEGARTILFEARMDRELRLEAAMEADVKAAVAGEAMVPWFQPVVETATG 472

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G+E L +W       +   EF+ + E L ++  + L ++ +  R    W        
Sbjct: 473 VIFGVEMLARWPREGGEIVGPGEFIPLVERLGLMNELTLSLMRQAFRSARDWPR-----D 527

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I + +N ++  L +  L   + +L+ +  + P R+++  +E  ++     +   L  LR+
Sbjct: 528 IHLGVNFSASQLKEGTLSPRLLSLLQEEDFDPHRLEVEVTEDALLNYEGAAMNALDTLRR 587

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETT 912
           +G SL +DDFG   S  S L  + FD +K + S + G   +    I+ ++I +A  +   
Sbjct: 588 LGASLVIDDFGMGYSSFSQLRNLAFDRLKIDRSFVQGMRGELDGRIVDAMIGLASGLGID 647

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++A+ +  E   + L   GC + Q  H A P+  + + +LL 
Sbjct: 648 VVAEGVEEEWMARLLIEKGCRFAQGFHFARPMPADRLARLLA 689


>gi|58581977|ref|YP_200993.1| hypothetical protein XOO2354 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623893|ref|YP_451265.1| hypothetical protein XOO_2236 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426571|gb|AAW75608.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367833|dbj|BAE68991.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 618

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 112/481 (23%), Positives = 207/481 (43%), Gaps = 22/481 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSN-GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           ++  D      +  I   P    + G I +  G   D+   +  +E +  N ++D  TG+
Sbjct: 126 LKLRDGHSIGTLCAIGTSPREGLDAGAITQLEG-LRDLAVLR--VENLRSNTYRDGPTGL 182

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRR 598
           PNR  F + L T L  S  D     T + ID+   D  + +   LG    D  + +  RR
Sbjct: 183 PNRSRFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYLRDMVKALGWEYADGYVSTAQRR 240

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L    IL RL    FG +  +E    ++A     + K+   P+       T  ASI
Sbjct: 241 LTAYLPGGTILYRLDPTTFGFLAQAEG--QRLATLCTKVSKAFTEPLEHQGIPHTAVASI 298

Query: 659 GFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
           G  S  SS     T   +  + ++A            E     + R+   ++        
Sbjct: 299 GAVSLQSSYGATDTIRSLTTSVDIARERCMPWS--MYERKHDVAQRNTFRLLAALPAALD 356

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N++L L Y P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  +++
Sbjct: 357 SNNQLRLHYQPRVDLHDHRCVGVEALLRWQHPLIGPVVPSDFIPMAEKTALINRITAWVI 416

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +        W+ Q       + +N+++ DL      + +Q  + +    P R+++ F+ES
Sbjct: 417 DNGIAQAARWQQQGLD--FNLALNVSAADLDRPGFADLLQRGLDRYKLDPRRLEIEFTES 474

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            ++ +PE     L  +  +G+ + +DDFGT  S  SYL  +P   +K + S +    +  
Sbjct: 475 AMIRHPEHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKIDQSFIRSLPDNR 534

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               ++ ++I ++ ++   ++A+ I        L   GC+  Q   +A P+   ++   L
Sbjct: 535 TDRTLVPAMIQLSHSLGQRVVAEGIESAEAYAHLRAWGCNEGQGYWIAKPMPAAALETWL 594

Query: 954 K 954
           +
Sbjct: 595 E 595


>gi|229825194|ref|ZP_04451263.1| hypothetical protein GCWU000182_00546 [Abiotrophia defectiva ATCC
           49176]
 gi|229790566|gb|EEP26680.1| hypothetical protein GCWU000182_00546 [Abiotrophia defectiva ATCC
           49176]
          Length = 569

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 216/542 (39%), Gaps = 26/542 (4%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           +  +I  D    + D     GL+   +  P++ W   IH  DR  F   ++     R   
Sbjct: 36  FFINIKNDYAYWSDDTVEYFGLSGNRVFNPVKVWANKIHPLDRKMFLDNIEEVFSGRLEE 95

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
               +R+   ++++     R R + N  G+ L + G   +             N F D +
Sbjct: 96  HDLTYRITNRNDEYITCSCRGRVIYNDLGERLYFAGTLIN----------HQNNVFIDPV 145

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR S   RL  +       +  +   ++  +  + K+N   G   G+ +L +L   
Sbjct: 146 TGLYNRTSLFSRLEEL-----HRNKKKYYFLMTGLKHFFKVNYSYGYDFGNKILNTLADI 200

Query: 599 IGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
             ++    +++ R  G +  +I  +S+    ++ +    +       + +    + ++  
Sbjct: 201 WRDIS-DNNMVFRTEGTKAVMIFEMSKYTKEEVEEIYREVLDKFKKGVIVENHTVFLSFY 259

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715
                  +  +  + +   +  A   AK    N +       F  ++ ++++   +   +
Sbjct: 260 ACLYQSDNLDLDINTIYNCSIFAANKAKREEINEIFQVTDELFSGNKFLMEKLEHIRNCI 319

Query: 716 ENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            ++    YLVY PI+     E++G+E LI+W    +G +  SEF+   E   +   +  +
Sbjct: 320 PDNFKGFYLVYQPIVSAQSGELIGVETLIRWKDEAYGFVPPSEFIEWLEGDAVFYDLGNW 379

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++ +  RD     ++   P + I IN+A   L ++     +  ++    ++P    L  +
Sbjct: 380 IIRQAIRDTRKIVEKY--PDMLININLAYPQLQNSNFNADLCKIMEAEGFNPKNFNLELT 437

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E     N E  +  +   + +GIS  LDDFGT  S L  +  +  D +K + S +    E
Sbjct: 438 ERCKFSNLETLKSSIAFFKSMGISSALDDFGTGYSALDLMMELQVDEIKIDKSFIKDIDE 497

Query: 894 K--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSIL 950
              R ++L++I   A  +   I  + I  +I    L         Q  + + PL  ++++
Sbjct: 498 DCSRQSLLKAITVCADELGKKICVEGIETDIMADYLYNHFKVTKYQGYYFSKPLEKDNLI 557

Query: 951 KL 952
           + 
Sbjct: 558 EW 559


>gi|21242540|ref|NP_642122.1| hypothetical protein XAC1795 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107995|gb|AAM36658.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 618

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 199/480 (41%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  I   P    +   +  +    D+   +          ++D  TG+P
Sbjct: 126 LKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLRDLAVLRVENLRSTT--YRDGPTGLP 183

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + L T L  S  D     T + ID+   D ++ +   LG    D  +    RR+
Sbjct: 184 NRSRFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRRL 241

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +L RL    FG +  +E    ++A     + K+   P+       T  ASIG
Sbjct: 242 AAYLPGGTLLYRLDPTTFGFLAQAEG--QRLATLCTKVSKAFTEPLEHQGIPHTAVASIG 299

Query: 660 FASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             S      +  T   +    ++A            E     + R+   ++         
Sbjct: 300 AVSLQSSYGAADTIRSLTTAVDIARERCLPWS--MYERKHDVAQRNTFRLLAALPAALDS 357

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +S+L L + P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 358 SSQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVID 417

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES 
Sbjct: 418 NGIAQAARWQQQGLD--FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESA 475

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +P+     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +    +   
Sbjct: 476 MIRHPDHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRT 535

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 536 DRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLE 595


>gi|228961565|ref|ZP_04123174.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228798047|gb|EEM45051.1| Sensory box/GGDEF [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 324

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 166/319 (52%), Gaps = 5/319 (1%)

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  +  + + ++ SIG A +  +   +  +L++A++AMY AK++G N    +    +
Sbjct: 1   MNEPFEIENQHLQISPSIGIAIYPEAGEDALSILQHADMAMYEAKNKGKNGSSLYTKELY 60

Query: 701 RSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +       I++DL +A+ N E YLVY P I     +I+G EALI+W HP  G+IS  EF+
Sbjct: 61  KKMERKARIEKDLPIALVNKEFYLVYQPQIDTTTNKIIGAEALIRWKHPLLGDISPCEFI 120

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I EE   +  +  ++L+     +  W        + I +N+++K+   ++L E +  ++
Sbjct: 121 PIVEETPQVVPLGHWVLQEACLQLKIWH-TFGYQNLKISVNLSAKEFRQDQLIENISQIL 179

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +     P  + L  +E + M + + + L L +L++ GI  ++DDFGT  S L+YL   P 
Sbjct: 180 NDVQVDPKYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPI 239

Query: 879 DTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K             +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q
Sbjct: 240 DTLKVPREFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKHNCKYMQ 299

Query: 937 DSHVASPLGFNSILKLLKE 955
             + + PL  N  +K L++
Sbjct: 300 GYYFSKPLTSNQFIKFLQK 318


>gi|294011402|ref|YP_003544862.1| putative diguanylate cyclase/phosphodiesterase [Sphingobium
           japonicum UT26S]
 gi|292674732|dbj|BAI96250.1| putative diguanylate cyclase/phosphodiesterase [Sphingobium
           japonicum UT26S]
          Length = 685

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 133/624 (21%), Positives = 252/624 (40%), Gaps = 55/624 (8%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           A I++        +             A      L   L     +   L  G        
Sbjct: 99  ALIVLVDAGDMAAVPTLLEAGATHFLAAPFTPAELRATLASAQRLVDRLVGGTTHSRRAQ 158

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              R        GD ++ W+   DR+  + ++A  LGL   S+      ++  +   +R 
Sbjct: 159 RIRR--------GDALF-WERDGDRIRISDNLARHLGLDRQSV--DPATFIRRLPRAERR 207

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +    L   +   R                              GD  R +     +   
Sbjct: 208 SVIAALRGMMRSGRP------------------EAFAHAAPGRPGD--RLVHHLRLVDGV 247

Query: 523 KKSLEGILCNAF------QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             +    L +A       +D+LTG+ +RQ+ LD L            L  TV+++ I ++
Sbjct: 248 VAADVEWLSDAHGHDATGRDDLTGLRSRQAALDWLEQ-------RQGLATTVLLLSISQF 300

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISEN-NSLKIAD 632
            ++N   G  VGD +L  + RRI  +        ++AR++G  F I L  E   + K   
Sbjct: 301 DRMNAAYGQVVGDALLGRIARRIERMTVDMAVGAMVARIAGTEFLIGLTGEAATAEKATF 360

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  +I  P +  +  I +TA  G A   +    ++ +++ A  A+  A+  GG  +
Sbjct: 361 LARQLIGAIGRPFSAGDHLIRLTARCGIAQSRAD-DDATRLIRRAGTALADARVGGGEGI 419

Query: 693 ESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F             ++ DL LA++  E+ +++ P   +  E ++G+EAL +W+HP++G
Sbjct: 420 RIFSSEKRSRQVDADQLETDLRLALDRGEIGILFQPQYPVDGEHMIGVEALARWNHPQYG 479

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            + +      A     +  ++  +     R   +W    +   + + IN+ ++D+     
Sbjct: 480 ALGAGMLFATAGRSDYMLPLSAHIQAEALRQAAAWPRALSH--LRLSINVTAEDIAQPGF 537

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
                 L+  + +  SR+ +  +ES ++ + + +  LL  LR  G+++ +DDFGT  S L
Sbjct: 538 MPQFLNLVDMSGFPRSRLTVEITESGLIEDVDNATALLTALRAEGLAVAVDDFGTGYSSL 597

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL  +P D +K +  L      T +   I+R +I MAK++   +IA+ +  E  +  LT
Sbjct: 598 AYLKSLPLDYLKIDSGLAQDIAGTARDRIIVRGVIHMAKSLGLRVIAEGVETEQQLDLLT 657

Query: 929 RMGCDYIQDSHVASPLGFNSILKL 952
           R GCDY Q    ++ +    ++ L
Sbjct: 658 REGCDYYQGFLRSAGVSSADLVAL 681


>gi|296272341|ref|YP_003654972.1| PAS/PAC sensor-containg diguanylate cyclase/phosphodiesterase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096515|gb|ADG92465.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arcobacter nitrofigilis DSM 7299]
          Length = 905

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/580 (20%), Positives = 237/580 (40%), Gaps = 42/580 (7%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSD----GERQSLAVLGSGDIVWDWDIVRDRVTT 430
           +++I+I I   + +++    +  +    +     ++  L +  S  +V   D        
Sbjct: 348 VLIILITISLFIARYLSVKIHNVENEREEHMNMLKQYKLLLDRSS-VVSKTDKDGIITYV 406

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
                   G     + G     +   H +  R   + + D+ +  +    +   + +  D
Sbjct: 407 NDSFEKTSGYNKNELIGISHKIIA--HPDTPRSQSKKLWDTILKGKI--WKGILKNKRKD 462

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
              ++  I I P+ +S G+I  +I     +TE  ++   +      D LTG+ NR S +D
Sbjct: 463 GVSYYNSITIIPIKDSQGNIKEFISAGTIVTELIENRSKLKNLFKTDALTGLGNRVSLID 522

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI- 608
            +               T+ +I+ID++K+IND     +GD V+ SL+ R+          
Sbjct: 523 HI---------SKQQNGTLALINIDRFKEINDSHSHVIGDKVITSLSDRLFRYFNDKGYD 573

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           L RL  + F +  ++++   +I D    M      P  + +    +T + G A       
Sbjct: 574 LYRLQSDIFALFTVNKD--RRIDDINEFMNTLGKEPYIIGKETFILTYTCGIA------S 625

Query: 669 TSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
            S  +L  A++A+  AK++      +  S +      + ++  E L LA++ + ++  Y 
Sbjct: 626 NSENLLTYADIALTEAKNKKVKIKEYNNSMKNIEEFKNNLLWVERLHLAIKENRIFPHYQ 685

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PI      +I   EAL++        I  +E++ IA++  +   +   M+E +     + 
Sbjct: 686 PIYNYKTGKIDKYEALMRLYL-DGKIIYPNEYLDIAKKTKLYPELTYKMVEEVISKFSTN 744

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             +         +N+  +DL++ EL   +     +      R+ L   ES  + + +   
Sbjct: 745 NYEF-------SLNLCIEDLMNEELMIYVFDYAEQKGV-FKRMVLEIVESEEIDDSDYIN 796

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
            LL R ++ G+ + +DDFG+  S   YL  +  D +K +GS++           +++SI 
Sbjct: 797 KLLRRFKEEGVKIAIDDFGSGYSNYDYLIKLQADYLKIDGSIIKLIENDIRTQNVVKSIF 856

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             A+     +IA+ +  E   K L  +G DY Q  +   P
Sbjct: 857 EFAQKSNIKVIAEFVSNENIDKILREIGIDYAQGFYYGKP 896


>gi|206601512|gb|EDZ37996.1| GGDEF EAL domain-containing protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 404

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 191/385 (49%), Gaps = 11/385 (2%)

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG + GDD+LV ++RR+ ++ +  + L RL G+ FG+++    +      F   + K
Sbjct: 2   NDRLGHSAGDDLLVQVSRRLQDIFRETNTLVRLGGDEFGLLVSEIEDEDA---FFARIMK 58

Query: 640 SIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++  P  +    +T++ S+G            S +L +A+LA+Y  K+ GG+    F+  
Sbjct: 59  TLRDPFEVEGEWVTLSGSLGVTFCPPDQGGGVSPLLSHADLALYQVKNGGGDGWAPFQQE 118

Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R  ++ +   A+ N EL L Y P + +   ++VG+EAL++W+HP  G +  + 
Sbjct: 119 MEERIKSRHRLRFEFDRALSNGELVLHYQPQVNMTTGQVVGVEALVRWNHPDQGFLLPAA 178

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E+  +I  +  F++E        W+       + I +NI ++  L   L   ++ 
Sbjct: 179 FIDVVEKSELIAPLGRFVMEEALSQQNRWKQ--GGLALQISVNIGARHFLSGSLHADLER 236

Query: 817 LISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +I++     P+ I++  +E+  + +   ++ ++ +   +GI ++LDDFGT  + LS L  
Sbjct: 237 VIARHNGSHPATIEIEVTETEALRDLFHAQRVIEQCHGLGIIVSLDDFGTGETSLSVLQN 296

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +    +K +   + G   ++K+ AI   +I + + ++  ++ + I  E     + RMGC+
Sbjct: 297 LSVGEIKIDQEFVRGIAESQKKQAIASGLIAIGRIMQLKVVVEGIETEEAGLFMIRMGCE 356

Query: 934 YIQDSHVASPLGFNSILKLLKERFP 958
             Q   +A P+   +I + +    P
Sbjct: 357 LAQGYGIARPMPAEAIPEWIASWKP 381


>gi|332670494|ref|YP_004453502.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
 gi|332339532|gb|AEE46115.1| diguanylate cyclase/phosphodiesterase [Cellulomonas fimi ATCC 484]
          Length = 744

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/730 (18%), Positives = 277/730 (37%), Gaps = 60/730 (8%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279
             ++MAW  +  + +  G L  LV        +        L S+ ++            
Sbjct: 37  AAWSMAWSGVVAMLLLVGGLFPLVPAGVPRDTVEH--LHGLLVSAFLLVALPATRAIGRG 94

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
             V +        + +    + + P+  AS+  +   +  +      +   +       L
Sbjct: 95  PVVRWWVAVAAVLLVVRTA-APFVPVPHASLVEVAGLTGAILTVVVYVIVALGRTRLGRL 153

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
                +L+      + + +T  L  D +   ++  L  + + +G  V+   L     +Q 
Sbjct: 154 ---GTLLVVAGVESVAILLTGVLLPDPVVAPVLTALWAVPLAVGLEVL--ALRRLVRAQD 208

Query: 400 IFSDGERQSLAVLG-SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             +   R   AV   S    +  D  R  +        +LG    ++ G +R        
Sbjct: 209 TAARQHRMRDAVASLSNAAWFARDAERLLLAARDSARDVLGDP--TIEGSLR-------P 259

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             R  F   L    G               D+     ++ +  +  + G           
Sbjct: 260 IARGRFVAELFGAEGTEL------------DHHARSFLVDLAQIVAAAG----------- 296

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             E+    + +   AF D LT +PNR++    L  +LD +   +  R  V+  D+D +K+
Sbjct: 297 --ERYHLTDRLRATAFSDPLTDLPNRRAVEQHLVDVLDQANV-ERTRVAVVYCDVDGFKR 353

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAM 637
           +ND LG A GD +L  +   +   ++  DI + RL G+ F  I+       ++   A A+
Sbjct: 354 VNDELGHARGDALLARVADHLRATVRGEDILVGRLGGDEFVAIVARAPEDAELVTLARAV 413

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R       +   R   +T  +         +    ++++A+ AM  AK  G       R 
Sbjct: 414 RDGFEDR-STRGRPTRLTVGV-ATWVPGDVVDPEALVRHADTAMLEAKRTGSGFRVFDRA 471

Query: 698 SSFRSDRVMIKE-DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              R +   ++   L  AV   +    + P++     E++ +EAL +W+H     +  ++
Sbjct: 472 LRRRVEADRLQRVALEEAVALDQFTAHFQPVVDTSSLEVLQVEALARWNHHGHLVLP-AD 530

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           ++ +AEE  +I  I L +L    R +  ++       + + +N+A++ L + +  E  + 
Sbjct: 531 WLELAEETGLIVPIGLSVLRESRRALERFQ-------MPVAVNVAARQLTEPDALEQFET 583

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                 +    + L  +ES ++    ++  +L  LR  G  + +DDFGT  S +S LG +
Sbjct: 584 AWGDAYW--EHLTLEITESALVQ-TGQAVPVLSELRARGARVAVDDFGTGYSSISRLGRL 640

Query: 877 PFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P D +K + S +     +R    +R+II +A N    ++A+ +     +  L  +G   +
Sbjct: 641 PVDVLKIDRSFIRELGTERGRGAVRAIIALADNHGLDVVAEGVETAAQLTALVDLGVRQV 700

Query: 936 QDSHVASPLG 945
           Q + +     
Sbjct: 701 QGNFLGRATP 710


>gi|149188642|ref|ZP_01866934.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Vibrio shilonii AK1]
 gi|148837552|gb|EDL54497.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Vibrio shilonii AK1]
          Length = 545

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/535 (21%), Positives = 225/535 (42%), Gaps = 19/535 (3%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   V   D+             + G     + G   N+L          +R +  
Sbjct: 20  ALESASAAVLITDVNAHIKYANKQFYNLTGYCEQEVIGKNPNFLRS-GKTTEKTYRDMWS 78

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  +      E   R  +         I P     G    YI +  D+T +K   E +
Sbjct: 79  KLLSGK--DWYGELINRKKNGTLFVEKAHISP-FEYQGQ-KFYIAVKRDVTSEKNLTEKL 134

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D LT +PNR SF D L   L     D     ++++ID++++K IND  G   GD
Sbjct: 135 SDLAYFDALTRLPNRTSFFDHLQNFLVE-HQDSTEPYSLLLIDLNEFKSINDSKGHDYGD 193

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             L ++ RR   ++    ++ARL G+ F ++L   +        A  +  +IA  I +  
Sbjct: 194 LFLQNVARRFKNVVGEGGVVARLGGDEFVVLLPK-SGVDVAERVAQNLLDAIAY-IEIGN 251

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIK 708
           +    +A++G  +  S +I +S +LK A+LAMY AK      V  +  + +    +  + 
Sbjct: 252 KSERGSAAVGITTNESKRIPTSLLLKQADLAMYRAKQCQTMWVSYNEEMGTQWGRKKALA 311

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           + L  A+E  +L + + P+I L   E+V  ++ ++W     GN+   EF+ IAEE  +++
Sbjct: 312 QRLAEAIELHKLEVSFMPVIDLHKNEVVAYKSRLEWVDKVLGNVDRFEFIPIAEESQLVR 371

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +NLF +E+  +               + + ++SK+       + +  ++ +    P  +
Sbjct: 372 KLNLFTIEQACKY------ATVGELKTVAVKVSSKNFGHGLFVQEVIEILERFKLPPQCL 425

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L   E ++    +R    L +L   G  +T+ DFG     +S L  +P   +K    L 
Sbjct: 426 VLEVFEDMLSK--KRCVDELYQLVDFGCQITVADFGMGHISISELRALPIQKLKVGAQLT 483

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
               +      + ++I+ +A  +    IA+ +  E  ++ L  +GC +    +++
Sbjct: 484 EEIAQDTSVEQVAKAIVGLANVLNIETIAEGVTTEQQLQSLKTIGCHFASGPYIS 538


>gi|153001690|ref|YP_001367371.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151366308|gb|ABS09308.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 768

 Score =  349 bits (895), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 201/441 (45%), Gaps = 18/441 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    L      +     L   ++++DI  ++
Sbjct: 334 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQHL------ADLKHELSGAMVLLDIKHFR 384

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +L+   RR+  L   PD+LARL G+ F ++         +       
Sbjct: 385 HINDIIGFANADTLLLLFARRLELLAPTPDLLARLDGDSFLLLYSQGIRPEHLL----KS 440

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++T   G      +      +++ AE+A+  A             
Sbjct: 441 LDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQG 500

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I  DL + +  ++LYLV+ P + L   +  G EALI+W HP  G I   E
Sbjct: 501 ADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  ++ ++L++  + +++W+ +     + + IN+++ DL+D  L   + +
Sbjct: 561 FIQLAENSGNIDIVSQWVLKQAIKQLVAWQQRG--MQLKLAINLSAHDLVDTRLPNQIAS 618

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L R R +G+S+ +DDFGT  S L+YL  +
Sbjct: 619 LLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGVSVAIDDFGTGHSSLAYLKIL 678

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK + S +       + + I+ + I +   +  T++A+ +     ++ L  + CD 
Sbjct: 679 PVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVEILRNLNCDI 738

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL         + 
Sbjct: 739 IQGYVFSKPLKAAEFDLWFEA 759


>gi|127514053|ref|YP_001095250.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
 gi|126639348|gb|ABO24991.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
          Length = 731

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 101/461 (21%), Positives = 208/461 (45%), Gaps = 24/461 (5%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +S  +G IL  +     + E  +  E    +   D LTG+PNR  F       L      
Sbjct: 270 LSGEDGPILMLV---EPVGEPVQESEAHSVSLNFDPLTGLPNRAYFEALYD--LANPCQC 324

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +     V  I++D+++ +N+V G   GD +L  L  R+ +L++  D++ARLSG+ FGI++
Sbjct: 325 ERSTF-VGFINLDRFQVVNNVSGHRAGDQLLCQLAARLSQLVRKEDVIARLSGDEFGILM 383

Query: 622 ISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            +  +       A  + +++     +   R  +V+ S+G A   S   + S++L+ A  A
Sbjct: 384 PNI-DVQIAEQVAERICQAMANHEFSWEGRSHSVSVSMGLARCESEVDSVSDLLRRASAA 442

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKE----DLCLAVENSELYLVYHPIIR-LMDEEI 735
              AK +GGN    +       +++  +     D+  A+ N    L Y PI      ++ 
Sbjct: 443 CRLAKEKGGNAWYFYSTQDPVVEKLNTEMSASVDIVGALANDRFELFYQPIEPLYASDDG 502

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD----IISWRDQANM 791
           + LE L++    +   I    F+  AE   +   ++ ++++++ R     +  W+  +  
Sbjct: 503 LHLEILLRMRSTEGELIPPGIFLPAAERFNLAAKLDRWVIDKLLRWGSENLALWQSLS-- 560

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + +N+++  + D+E    ++  +       S++    +E+  +   + +  L+  +
Sbjct: 561 ---MVSVNLSALSISDSEFINWLEMRLLGEPELVSKLCFEITETAAVSQLDHATGLINTV 617

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
           + +G  L LDDFG+  S  +YL  +  D VK +G  +    E     AI+ +I  + +++
Sbjct: 618 KPLGCKLALDDFGSGFSSFAYLKLLDVDYVKIDGQFIQHLCEDRADQAIVAAICQLGRDM 677

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              I+A+ +      K L ++G ++ Q   +A P    S+ 
Sbjct: 678 AFEIVAEFVESVEVAKHLQKLGVEFGQGYGIARPESLTSLT 718


>gi|330899154|gb|EGH30573.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 330

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 91/327 (27%), Positives = 165/327 (50%), Gaps = 6/327 (1%)

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR- 701
            P+ L    + VT SIG        +T +++LK A++A+Y AK  G N  + F VS  + 
Sbjct: 1   EPMFLDGHRLQVTPSIGVVLIPDDGLTPADLLKRADIALYRAKDCGRNASQFFHVSMQQA 60

Query: 702 -SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            S R+ ++ DL LA+  +E +L +   +   +E I G EAL++W HP++G ++  +F+ I
Sbjct: 61  VSQRLRLENDLRLALTRNEFHLHFQAQVDCRNEYITGAEALLRWQHPEYGLMAPDQFVQI 120

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIASKDLLDNELCEGMQALI 818
            EE  MI  +   +L    +       Q  +P     + +NI+ +  L ++  E ++  +
Sbjct: 121 LEESGMILEVGSHILNEACKTGGLLLRQGLIPENRFLMGVNISPRQFLQHDFIERVERSL 180

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +      S +KL  +E +V+ N + + L +  L+ +G+S  +DDFGT  S L+YL  +P 
Sbjct: 181 TLNQLPASMLKLEITEGIVIQNLDDTILKMLSLKALGVSFAMDDFGTGYSSLTYLKRLPV 240

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S +    +      I+R+I+ MA+++   +IA+ +     +  L ++GC   Q
Sbjct: 241 DTLKIDQSFVQDATNDPNDAEIIRAIVAMAQSLNLNVIAEGVETSEQLAFLEKVGCYTYQ 300

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
               + PL       LL  + P  +  
Sbjct: 301 GYLFSEPLPGPQFESLLALKRPAQQTA 327


>gi|288922307|ref|ZP_06416501.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EUN1f]
 gi|288346332|gb|EFC80667.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Frankia sp.
           EUN1f]
          Length = 1032

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 107/446 (23%), Positives = 206/446 (46%), Gaps = 23/446 (5%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               F D+LT + +R   +     ++    +    +  +MV+D+D +K+IN   G   GD
Sbjct: 173 RTRTFTDSLTALASRPGLIQAADPLIA-GRSAAGCQTVLMVVDLDHFKEINTAFGYEAGD 231

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-----------------NNSLKIAD 632
           DVL +  R +  +   P + ARL G++F ++L  E                      +AD
Sbjct: 232 DVLQTFGRWLRLVRPPPLLTARLGGDKFALLLPGEPVPPGAAGAGWAPPGPETADPALAD 291

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNH 691
               + + +   + +   ++ V A+ G  S  +      E+L  A+ A+  A+  G    
Sbjct: 292 LGRDVLRQLDGRLRIGGVDVEVEATAGLTSAPACGKRVIELLSCADAALADARRSGERVG 351

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           V +  +++ R   + +  +L  A++  EL L Y P+ +    +IVG+EAL++W HP  G 
Sbjct: 352 VWTTGMAAVRPWELALHAELRSAIDQGELELYYQPMAQAATGQIVGVEALMRWRHPSRGL 411

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F+ +AE   +I  +  + L+        WR +    P+ +  N++ + L+ +EL 
Sbjct: 412 LPPGSFLPMAERSSLIVELTWWELDEALHQCARWRAEG--IPVAVSANLSPRLLVVDELP 469

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +   ++     P  + L  +E+ ++  P R+  +L  LR  G+ L++DDFGT  + + 
Sbjct: 470 RVVTGRLAAYDLPPDVLTLEITENALVSQPARAAAMLSELRVSGVKLSMDDFGTGYNSME 529

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  + FD +K + S +  +      +AI+RS++ +   +   ++ + I  E   + LT 
Sbjct: 530 ILKALTFDEIKIDRSFVVDAQGSLPDMAIVRSVVDLGHRLGLRVVGEGIEDEPSERILTE 589

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           +GCD +Q   V+ PL    +  LL  
Sbjct: 590 LGCDVLQGYAVSVPLPARDLTPLLAA 615


>gi|307720847|ref|YP_003891987.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978940|gb|ADN08975.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 630

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 190/422 (45%), Gaps = 16/422 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   AF D LT + NRQ   + L        T       +M+ID+D +K++ND  G
Sbjct: 217 LYYKTRKKAFIDPLTQVYNRQYLSEFLE-------TTSLQNYYLMMIDLDNFKRVNDNYG 269

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GDDVLV++ + I   ++  DI+ R  G  F +++  + N   I       +  + + 
Sbjct: 270 HNIGDDVLVAVAQEIKSTVRQEDIVIRFGGEEFILLVDKKENKESIGVAERIRQAVMNLD 329

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           I   + +I++T SIG   +  S     E +K A+  +Y AK  G N VE F         
Sbjct: 330 IQSHDNQISMTLSIGVNPFPYSAKNMDEAIKIADEQLYVAKSSGRNRVEIFDDGKKYESE 389

Query: 705 VM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
                 D+ LA++   +   + PI      +IV  E LI+  + +   I    F+     
Sbjct: 390 ASNRISDIRLAIDEDGIKCAFQPIYFAKTGKIVKYEMLIRMINHEGKVIPPDSFLPSIRH 449

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +   +   +L++    + S +       + + IN+  +D+L+ ++ E ++        
Sbjct: 450 TQIYIRLTSIVLQKAIETLQSMQ------DVHLSINLDIQDILNEDIIELLKFTFKSKQD 503

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R+ +   E   + N E  +  +  L+++G S+ LDDFG+  +  SY+  +  D +K 
Sbjct: 504 LAQRVTIEILEHEEITNFEAIQKSISGLKELGFSIALDDFGSGYANFSYMMNLDLDILKI 563

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +G+++    + + A  I+++I+   ++++   +A+ I  + ++  L  +G D +Q  ++ 
Sbjct: 564 DGTIIKNIDKDKAAYNIVKAIVAFGRSMKMETVAEQIETKEEMDTLVELGVDCLQGYYLG 623

Query: 942 SP 943
            P
Sbjct: 624 RP 625


>gi|323489254|ref|ZP_08094486.1| sensory box, GGDEF family protein [Planococcus donghaensis MPA1U2]
 gi|323397141|gb|EGA89955.1| sensory box, GGDEF family protein [Planococcus donghaensis MPA1U2]
          Length = 668

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/533 (19%), Positives = 218/533 (40%), Gaps = 22/533 (4%)

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                P    +       + G     +      D     +IL +           E +  
Sbjct: 151 ITYANPLFLKLSKWTPKRILGKPVWHMFGDGDEDVQFVDSILSTLRQGE--VWNGEAKKV 208

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D + +W+ +   PM  S+ +   YI +  DIT  K++ + +   AF D +TG+ NR  
Sbjct: 209 KKDGEIYWVELTAIPMQLSS-EDTYYIFLEKDITANKQAQKHLEEIAFIDPVTGLENRHR 267

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               +   ++     +    + + +DID++  + DV    V +++L+  T+R+  +    
Sbjct: 268 LEQIVNEYIE-----EGRHFSFVFMDIDRFYTLRDVSDTDVENELLIEFTKRLR-MYFSD 321

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
            I+ R   + F ++    N           +      PI L    + +T S     +   
Sbjct: 322 SIITRAGLHEFALVTPLSN-----WFIEGFLHYLQQHPIYLQGTAVPLTVSGAITKYPED 376

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVE--SFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
           + +   ++K +   +   K RGG+ +   +       S +  I++ L  A++   L L+Y
Sbjct: 377 QHSFMHLIKASYATIKKVKERGGSEISALTPDDHERLSRKASIEKHLIYALDRKNLQLLY 436

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+ L + ++  +EA ++W   + G ++  E + IAEE  +I  I  F++E     +  
Sbjct: 437 QPIVNLANGKVERVEAFVRWTDSEIGVVTPDELIPIAEENGLINKIGSFVVETACLQLKD 496

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER- 843
           W+ +     + I IN +  +  D ++ + +   +      PS + +  +E   +      
Sbjct: 497 WKSK--DIDLQISINSSIHEFRDKDMAKMLLENLKLNDCHPSSLMIEITEKFALEAEAER 554

Query: 844 -SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILR 900
                +  L + GI+  LDDFGT  +   Y+  +P  ++K +  ++   T++     ++ 
Sbjct: 555 SIMTQMKNLHQEGITFALDDFGTGYASFRYMLLLPISSIKIDQMIIQSITKQEKIQKLIN 614

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +I   K+++  + A+ +      + L  MGCD +Q   +  P+    + K L
Sbjct: 615 GMIQFGKSLDFQVTAEGVETNEQFELLRAMGCDSLQGYIIGHPMTATDLEKWL 667


>gi|148358623|ref|YP_001249830.1| GGDEF domain-containing sensory box protein [Legionella pneumophila
           str. Corby]
 gi|148280396|gb|ABQ54484.1| sensory box/GGDEF family protein [Legionella pneumophila str.
           Corby]
          Length = 835

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 143/538 (26%), Positives = 242/538 (44%), Gaps = 31/538 (5%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  D V T  +   IL        G              +  +         +  R++ E
Sbjct: 321 LNGDVVFTNEEGKIILNYWIKLFKGLP-----------VELLKEAQRIQKSNQSTRIEME 369

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              +       W+              +   G   DIT+ K +   +L    +D LT I 
Sbjct: 370 IEDKIYLFTLVWI---------DEFKQINIYGT--DITQLKNTQNAMLNLTRRDTLTQIA 418

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ F ++L   +      +     +++ID+D +K +ND LG  +GD +L+++T R+   
Sbjct: 419 NRQYFEEKLIEKIYEHHLKEK-SLALLLIDLDNFKIVNDTLGHPIGDKLLMAVTNRMTRC 477

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D +ARL G+ F ++L  + N+      A  +   +  P    E  +T+TASIG A 
Sbjct: 478 LRANDFIARLGGDEFIVLL-DQCNTDTAVKVAEKIINVLDKPFQFDEYHMTITASIGIAI 536

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSE 719
           +  +   +S++LK A++AMY +K  G N    F  +    +      +K+D+ LA    E
Sbjct: 537 YPETSEIASDLLKYADIAMYQSKKTGKNKCTVFSKNLHYKENQRNEILKKDIELAALKRE 596

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           LY+ Y P I L D  IVG+EAL++W HP  G I  +EF+ IAE+   I  I+ + +E+  
Sbjct: 597 LYIDYQPQIDLSDNTIVGIEALLRWSHPTLGLILPTEFIPIAEQTGCIHTISQWFIEQTL 656

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            D   ++       I + IN++   L D    + +   + +   S S+I L  SE ++  
Sbjct: 657 LDYSQFQQL--SSNIKLSINVSLSQLNDMRFTKILCDSLLQNNLSKSKIILDISERMIAP 714

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIA 897
           +  +    L ++  IGI+L+LD+F      L  L  +P D +K +  L+ G     K   
Sbjct: 715 HFIQISKKLKQIHHIGINLSLDNFCCPQISLPELLSLPLDYLKVDQRLLIGIEGKIKLRK 774

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +L  II + K++   II K I      + +  +GC Y Q      P+  N +L L+K+
Sbjct: 775 LLSGIINLTKDLNIKIIQKGIETAEQHEVIKSLGCQYAQGYFYCKPVALNDLLPLIKK 832


>gi|52842848|ref|YP_096647.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629959|gb|AAU28700.1| sensory box/GGDEF family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 835

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 142/538 (26%), Positives = 242/538 (44%), Gaps = 31/538 (5%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  D V T  +   IL             W+        +  +         +  R++ E
Sbjct: 321 LNGDVVFTNDEGKIILNY-----------WIKLFKELPVELLKEAQKIQNSNQSTRIEME 369

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              +       W+              +   G   DIT+ K +   +L    +D LT I 
Sbjct: 370 IEDKIYLFTLVWI---------DEFKQINIYGT--DITQLKNTQNAMLNLTRRDTLTQIA 418

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ F ++L   +      +     +++ID+D +K +ND LG   GD +L+++T R+   
Sbjct: 419 NRQYFEEKLIEKIYEHHLKEK-SLALLLIDLDNFKIVNDTLGHPTGDKLLMAVTNRMTRC 477

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D +ARL G+ F ++L  + N+      A  +   +  P    E  +T+TASIG A 
Sbjct: 478 LRANDFIARLGGDEFIVLL-DQCNTDTAVKVAEKIINVLGKPFQFDEYHMTITASIGIAI 536

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSE 719
           +  +   +S++LK A++AMY +K  G N    F  +    +      +K+D+ LA    E
Sbjct: 537 YPETSEIASDLLKYADIAMYLSKKTGKNKCTVFSKNLHYKENQRNEILKKDIELAALKRE 596

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           LY+ Y P I L D  IVG+EAL++W HP  G I  +EF+ IAE+   I  I+ + +E+  
Sbjct: 597 LYIDYQPQIDLSDNTIVGIEALLRWSHPTLGLILPTEFIPIAEQTGCIHTISQWFIEQTL 656

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            D   ++       I + IN++   L D    + +   + +   S S+I L  SE ++  
Sbjct: 657 LDYSQFQQL--SSNIKLSINVSLSQLNDTRFTKILCDSLLQNNLSKSKIILDISERMIAP 714

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIA 897
           +  +    L ++  IGI+++LD+F      L  L  +P D +K +  L+ G     K   
Sbjct: 715 HFIQISKKLKQIHHIGINISLDNFCCPQISLPELLSLPLDYLKVDQRLLIGIEGKIKLRK 774

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +L  II + K++   II K I      + +  +GC Y Q      P+  N +L L+K+
Sbjct: 775 LLSGIINLTKDLNIKIIQKGIETAEQHEVIKSLGCQYAQGYFYCKPVALNDLLPLIKK 832


>gi|86144475|ref|ZP_01062807.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85837374|gb|EAQ55486.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 614

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 197/460 (42%), Gaps = 26/460 (5%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
            ND +EQ   +  +      D+LTG+ NR    D L +I   S        T+ ++DI+ 
Sbjct: 166 FNDRSEQ--LVNQLSYEVSHDSLTGLLNRSCLSDTLESITQQSV----TPFTLALLDINS 219

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND+ G  +GD VL  +   +   L   ++  R +GN F  I               
Sbjct: 220 FKAINDMHGNYIGDKVLQFVAETLRRTLPDNNLTFRTAGNEFAFI----TYHSDPIAVCE 275

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   I      ++ +I    SIG A          +++ N  LA+   +H    +++ +
Sbjct: 276 QILDKIKQGYTSIDIKIDFDVSIGIARSGGDNKDVEQIIFNTSLALKECQHSQDTYIQCY 335

Query: 696 RVSSFRSDRV--MIKEDLC----------LAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                   +    +   L            A  ++ +Y+V  PI+  +D      E L +
Sbjct: 336 DTHLRVRYQRKTELIAALRSELDSPISDSQAPNDNGMYVVVQPIVDHIDTRWDYFEVLTR 395

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W   + G+IS  EF+ +AEE  +I  +   ++E + R   +  ++     + + IN ++ 
Sbjct: 396 WKTTRHGDISPVEFIQVAEESGLIVELGERIIELVCR-AKTRLERGLGYKVKLGINCSAH 454

Query: 804 DLLDN-ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +L D+      +   I +  +  +   +  +E+V++   + ++  L  LR  G ++ LDD
Sbjct: 455 ELTDSKRYISYLTRTIEQHHFKANEFVIELTETVLLSPTQETKSALDFLRGQGFTIALDD 514

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+Y+   P D +K + + +          +++  I+ +A  +  +++A+ +  
Sbjct: 515 FGTGYSSLNYIHSYPIDCIKIDATFIRNLLTNSTSESVVWLIVQLAHRLNVSLVAEGVEK 574

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
              +++L  MGCD IQ    + P+   +I+  +    PL 
Sbjct: 575 REQLEKLHAMGCDKIQGYLNSPPMRPEAIVSYVTHSEPLA 614


>gi|160933559|ref|ZP_02080947.1| hypothetical protein CLOLEP_02413 [Clostridium leptum DSM 753]
 gi|156867436|gb|EDO60808.1| hypothetical protein CLOLEP_02413 [Clostridium leptum DSM 753]
          Length = 764

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 175/444 (39%), Gaps = 14/444 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   + +  +AF D+LTG  N  +F  +   +   S         V +++I  +K IN+ 
Sbjct: 320 RNHYKELEYSAFIDHLTGGMNNAAFQLKCQEVFAQS---PPGTYAVALLNIKNFKLINES 376

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   G+  L  + R +       +  AR   + +   +  EN+   I      + ++I 
Sbjct: 377 FGSDEGNRTLEFIMRALESFSGPGEFAARAEADNYFFCM-KENDPDTIRGRLRTIAETIN 435

Query: 643 MPINLLERE----ITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFR 696
             I + + E      +    G        +  + +   A  A +   A+        +  
Sbjct: 436 DRIKIFDSEHETPFKLILRQGVYVVDDPSLEITIIQDRARTACWNRAAQEDNPCVFYNTE 495

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +        + +    ++   E  + + P +   + EI G EAL++W HP+ G IS  +
Sbjct: 496 FTESMKREQELNDLFEDSLRKGEFQVYFQPKVWGKNGEIGGAEALVRWLHPQRGMISPGD 555

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E+   I  ++ ++ E+  + +   R ++      + +N++ +   D +    +Q 
Sbjct: 556 FIPVLEKSGRICQLDFYVFEQTCKFLHG-RLESGKRAFPVSVNLSRRHFKDPDALAKLQK 614

Query: 817 LISKTLYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +          ++L  +ES+   +   E  +  +  + +IG   +LDDFG   S L  L 
Sbjct: 615 IAEDNGVPTDLLELELTESIFFNDRGIEYVKKQIQEMHRIGFRCSLDDFGAGYSSLGLLM 674

Query: 875 YIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
               D VK +         K+   ++ +I  +A+ I    +A+ I  +  +  +    CD
Sbjct: 675 EFDVDVVKLDRRFFLDVGRKKARDVVTAITELAQKIGAKTVAEGIETQEQLDFVKEARCD 734

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            IQ    A P+  +   + + +R 
Sbjct: 735 MIQGYIYARPMPVSEFERWIDQRQ 758


>gi|253582553|ref|ZP_04859774.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835423|gb|EES63963.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 867

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 99/430 (23%), Positives = 184/430 (42%), Gaps = 15/430 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTGI N+                       ++  DI+++K +ND  G   GD +L   
Sbjct: 138 DSLTGIYNK---DFFYFKTTTFFKDLSKKNYYIVFADIERFKLVNDTYGSKEGDRLLKYT 194

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I E +    I  R   + F I ++   +          + ++I+  ++   + + + 
Sbjct: 195 ADIINEEINGYGICGRAEADHFIICVVDIADIEG-------LLENISKRVSEFNKNMNIV 247

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
              G        I+   M   A +A    K++       +  S  +      M+  D+  
Sbjct: 248 IHYGIYQVEDRSISIELMCDRAMIAASTVKNKYDKKFAYYDDSIRKKLLQEQMLINDMRT 307

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           ++      + Y P      E+IVG+EAL++WDHPK G +S   F+ + E    I  I+ F
Sbjct: 308 SLAERRFKVFYQPKYDFKTEKIVGVEALVRWDHPKLGMVSPGVFIELFERNGFITEIDYF 367

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E   + +  W D      + I +N++  +L +N L   +  L+ K   SP  + L  +
Sbjct: 368 VWEEACKKLKEWTD-NGYKNLSISVNVSRINLYNNNLPNLLIELVKKYNISPKSLHLEIT 426

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES    N E+      RL+KIG  + +DDFGT  S L+ L  +P D +K +   +    +
Sbjct: 427 ESAYTENSEQIIEGAERLKKIGFIIEMDDFGTGYSSLNMLAKLPIDVLKLDMGFVHSIEK 486

Query: 894 KRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + +++  + II +AK ++  I+A+ +     +  L  +GC Y Q  + + P+    + K
Sbjct: 487 DKNSLILLKVIINLAKELQLAIVAEGVETNKQVNILKNIGCQYAQGYYYSPPISEEKLDK 546

Query: 952 LLKERFPLVK 961
           +  E   ++ 
Sbjct: 547 IFIENNSIIS 556



 Score =  135 bits (339), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 91/184 (49%), Gaps = 9/184 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK +  +  ++  D LTG+ NR+   +R+  IL+    ++++  T ++IDID +K+IND 
Sbjct: 585 KKMIYDLKYHSEHDPLTGLLNRRELKERVNKILE----NNDIEGTFIIIDIDNFKRINDR 640

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L  ++ ++       D ++RL G+ F +  +   +  +I      M  +  
Sbjct: 641 YGHVKGDEILKEISEKLKNSFSKIDSISRLGGDEFVVFTLGSTDESRIE----LMMNNFF 696

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             I  ++ +I +T S G   ++S  I    +  NA++A+  AK  G N+ + +     + 
Sbjct: 697 EMIKKIKIDIPITCSAGIC-FSSKSIDYDSLYYNADMALLSAKISGKNNYKIYTEKMEKY 755

Query: 703 DRVM 706
             + 
Sbjct: 756 SPIN 759


>gi|218670505|ref|ZP_03520176.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli GR56]
          Length = 471

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 201/436 (46%), Gaps = 12/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + + + I  N+  D LT + NR+     L   L         + +++ ID+D++K IN
Sbjct: 20  ELELAKDRIEHNSLHDPLTALANRRKLDIALEN-LTHDGRRQRQKFSILHIDLDRFKDIN 78

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD +LV  ++ + + ++  D++AR+ G+ F I+     +       A  + + 
Sbjct: 79  DTLGHAAGDAMLVHASKVLAKNVRGSDLVARIGGDEFVILAGDVGDKEMAE-LATRIVEE 137

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  PI+          SIG A      I + ++L NA++A+Y AK  G N  E F  +  
Sbjct: 138 MRQPIDFQGFSCRCGVSIGIALANGIHIDARKVLINADIALYRAKSTGRNRFEFFNHNLQ 197

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +     +++   ++N E    Y P       E+ G+EAL++W HP  G ++  +F+
Sbjct: 198 ADIINTKRTADEILAGIDNGEFTAWYQPQFSARTMELTGVEALVRWKHPSKGWLAPDKFL 257

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IA+E+ +++ ++  +LE   RD I W       P  + +N++++ L D  L E +  L 
Sbjct: 258 RIADEINVVQTLDRIVLETALRDKIRWTALGIAVP-KVSVNVSARRLHDGSLLESLADL- 315

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                 P  +     ES+ +   E      L R++ +GI + +DDFGT  + +  L  + 
Sbjct: 316 ---HIRPGELSFELVESIFLDESEDVVSQNLERIKALGIDIEIDDFGTGHTSIVSLLKLK 372

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +  L+       +  A++ SII +A+++    +A+ +        L  + CD +
Sbjct: 373 PKRLKIDRQLVQPIIGASQERALVSSIIDIARSLGVETVAEGVETAAHAALLRDLDCDIL 432

Query: 936 QDSHVASPLGFNSILK 951
           Q    +  L F+    
Sbjct: 433 QGYAFSPALSFDDFTA 448


>gi|238756537|ref|ZP_04617839.1| Diguanylate cyclase/phosphodiesterase [Yersinia ruckeri ATCC 29473]
 gi|238705243|gb|EEP97658.1| Diguanylate cyclase/phosphodiesterase [Yersinia ruckeri ATCC 29473]
          Length = 666

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 97/508 (19%), Positives = 212/508 (41%), Gaps = 31/508 (6%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H          LD+    +    Q     R  D++   +        N N  +L  + 
Sbjct: 183 IVHP--LRAMARELDNISQEQVLGHQLTIPARHYDDEIGMLARN----YNRNQQLLSKVC 236

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
                         +   +    +T +PNR  FL  L   +      +     ++V+ I+
Sbjct: 237 ------------AEMNRISNHHPVTELPNRTLFLSLLEQHIASGERVEKFH--LLVVGIE 282

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
              +   V+     + +L+++ +R+ + +    +L +LS   F ++    +        A
Sbjct: 283 TLHEAYGVMTELQNEQLLLTIVQRLEQCIDNHCLLGQLSKTEFAVLAKKISRPFPALQLA 342

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P+     ++   ASIG A + + + ++ ++++NA  AM  A+H+G + +  
Sbjct: 343 RRIMAQVTAPLTFENMQLRPRASIGIAQYLNQQESAEDVMRNASSAMMTAQHQGRHQILY 402

Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F        +  +  + D+  A+E  +  L   P   L    ++G EAL++W+      +
Sbjct: 403 FEPHLSEKTQKRLTYENDILQAIEKRDFTLYLQPQCELSTGTVMGAEALLRWNQADGTYL 462

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S ++F+ + EE  ++  +  ++LE   R +  W+ Q     + + +NI+   + D+    
Sbjct: 463 SPADFLPLVEEKGVMVPLGNWVLEESCRILADWQQQGIH--LSLAVNISGLQVQDDAFLP 520

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++ +I+        + L  +E+  + + + + +LL  L  +G+S+ LDDFG   + L Y
Sbjct: 521 HLKTIINHYGIDGRHLVLEITETAHIPDLDEALVLLRELHALGVSVVLDDFGMGYASLHY 580

Query: 873 L---GYIPFDTVKFNGSLMTGSTEKRIAILRSII-PMAKNIETTIIAKDIYGEIDIKELT 928
           L     +P D +K + S +    +    ++ SII  ++  +E  ++A+ I  +  +K L 
Sbjct: 581 LNCLKCLPIDMIKIDKSFVKSLPDDD--VMASIIGSISTVLELRVMAEGIENQAQLKWLL 638

Query: 929 RMGCDYIQDSHVASPLGFNSIL-KLLKE 955
             G  Y Q    + P+       + LK 
Sbjct: 639 DHGVTYGQGFLFSRPVAREEFEARFLKR 666


>gi|182418338|ref|ZP_02949633.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           butyricum 5521]
 gi|237666526|ref|ZP_04526511.1| diguanylate cyclase/phosphodiesterase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377720|gb|EDT75264.1| diguanylate cyclase/phosphodiesterase domain 2 [Clostridium
           butyricum 5521]
 gi|237657725|gb|EEP55280.1| diguanylate cyclase/phosphodiesterase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 443

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 205/434 (47%), Gaps = 32/434 (7%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T +P+   F   +   +  S  +D  +  +++ DID +K +ND  G   GD +L  
Sbjct: 23  YDRITLLPSVDEFKKVVKNNIKNSTIND-TKAALILFDIDNFKHVNDSFGHEFGDVMLKC 81

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L+  I  +L    ++ R SG+ F + L + N    I      +             +I +
Sbjct: 82  LSGEIRSVLDDDILMCRYSGDTFILYLNNINYEDGIITTVEKVFDIFKK----AHEDIYL 137

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
           T S+G A    + I    +LKNA++AMY AK  G N  + F     +       ++++L 
Sbjct: 138 TISMGIALVPKNGIQYDFLLKNADIAMYEAKMNGKNKFKFFSDEMGKKVIKEYTLQKELR 197

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            ++E +E+Y+++ P + L D  + G EAL +W++ K+G +S  +F+ +AEE  MI  I  
Sbjct: 198 TSLEKNEIYVMFQPKVLLEDYTVCGFEALARWNNEKFGEVSPVKFIPLAEESKMIVPIGT 257

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           F+LE + + I  +          I +N++     +  +   ++ LI K   S   +++  
Sbjct: 258 FVLEEVCKKIR-YLSSNGYLNFKIAVNLSEVQFQEEIVVSDLKRLIKKYHISTRHLEVEI 316

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +ES+ M + E +  +L  ++K+GI++ LDDFGT  S LSYL  +P D +K + S +    
Sbjct: 317 TESMFMKSFESNLKVLEEIKKMGITIALDDFGTGYSSLSYLTKLPIDVLKIDRSFIIDLC 376

Query: 891 STEKRIAILRSIIPMAKNIET-----------TIIAKDIYGEIDIKELTRMGCDYIQDSH 939
              K   ++ +I+ ++  +                          + L  + CD++Q  +
Sbjct: 377 LNPKEKCMVENIVRLSHQLGIEVVAEGVEEEEQ-----------AEYLKAISCDFVQGYY 425

Query: 940 VASPLGFNSILKLL 953
            ++P  F+ I+ ++
Sbjct: 426 FSNPKSFDEIINII 439


>gi|237746149|ref|ZP_04576629.1| sensory box protein [Oxalobacter formigenes HOxBLS]
 gi|229377500|gb|EEO27591.1| sensory box protein [Oxalobacter formigenes HOxBLS]
          Length = 684

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 89/469 (18%), Positives = 196/469 (41%), Gaps = 14/469 (2%)

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           + +   ++     +  + G+    I    DIT + +    +   A++D    I NR +F 
Sbjct: 210 NGKLGRLLHVGAMLLKTPGEEDLAIFTGYDITHRIEYERKLKTLAYRDRQLDIGNRAAFH 269

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             +  +      +      V ++ +  +  IN + G   GD +L +       ++   + 
Sbjct: 270 RDMDGM-----AETGQSCQVGLVSLGNFNNINMLFGRERGDRILKAFAESFLAIV-PGEK 323

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R+ G +F +I               A+   +   ++  E+         F  +     
Sbjct: 324 VYRVGGCKFALI---AATYEAGCAMLDAVWNRVYRRLSSGEKNFHFPVDAVFVGFPDFAA 380

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
           +   +L NAE  + +++         F     +       +   +  A+EN    + Y P
Sbjct: 381 SPEALLINAEYRLKNSRDGKQGKRLLFGEEDRKMMERRSLLTSVIRQALENGAFQVFYQP 440

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I  + D++    EAL++    + G I+  EF+ IAEE  +I  + L++L+R+   +  WR
Sbjct: 441 IYTVSDDDYAKAEALLRLHDRRLGWIAPDEFIPIAEEQGLIHELGLYVLKRVCAKLAGWR 500

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D+    P+ + IN+++     +        ++ +    PS+I +  +ES+++ + E    
Sbjct: 501 DKGFR-PLAVHINVSTVQFSGDGFFNRFMGIVDRYGIDPSQIVIEVTESIMIQSFEYMMS 559

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIP 904
           ++ R    G+  +LDDFGT  S L+Y+  +P  ++K + S      E      +++++  
Sbjct: 560 VMNRFIDRGVRFSLDDFGTGYSSLNYVAALPISSIKLDKSFTDSMQESDVHALLVKNVAN 619

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A+ +   +IA+ +     +  L ++G   +Q  + + PL  N +   L
Sbjct: 620 IARGLRYELIAEGVETAAQMNALRQLGFAAMQGYYFSRPLPENDLDDFL 668


>gi|296108287|ref|YP_003619988.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650189|gb|ADG26036.1| Predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 835

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 142/538 (26%), Positives = 241/538 (44%), Gaps = 31/538 (5%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           +  D V T  +   IL        G              +  +         +  R++ E
Sbjct: 321 LNGDVVFTNEEGKIILNYWIKLFKGLP-----------VELLKEAQRIQKSNQSTRIEME 369

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              +       W+              +   G   DIT  K +   +L    +D LT I 
Sbjct: 370 IEDKIYLFTLVWI---------DEFKQINIYGT--DITPLKNTQNAMLNLTRRDTLTQIA 418

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ F ++L   +      +     +++ID+D +K +ND LG   GD +L+++T R+   
Sbjct: 419 NRQYFEEKLIEKIYEHHLKEK-SLALLLIDLDNFKIVNDTLGHPTGDKLLMAVTNRMTRC 477

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L+  D +ARL G+ F ++L  + N+      A  +   +  P    E  +T+TASIG A 
Sbjct: 478 LRANDFIARLGGDEFIVLL-DQCNTDTAVKVAEKIINVLGKPFQFDEYHMTITASIGIAI 536

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSE 719
           +  +   +S++LK A++AMY +K  G N    F  +    +      +K+D+ LA    E
Sbjct: 537 YPETSEIASDLLKYADIAMYQSKKTGKNKCTVFSKNLHYKENQRNEILKKDIELAALKRE 596

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           LY+ Y P I L D  IVG+EAL++W HP  G I  +EF+ IAE+   I  I+ + +E+  
Sbjct: 597 LYIDYQPQIDLSDNTIVGIEALLRWSHPTLGLILPTEFIPIAEQTGCIHTISQWFIEQTL 656

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            D   ++       I + IN++   L D    + +   + +   S S+I L  SE ++  
Sbjct: 657 LDYSQFQQL--SSNIKLSINVSLSQLNDTRFTKILCDSLLQNNLSKSKIILDISERMIAP 714

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIA 897
           +  +    L ++  IGI+++LD+F      L  L  +P D +K +  L+ G     K   
Sbjct: 715 HFIQISKKLKQIHHIGINISLDNFCCPQISLPELLSLPLDYLKVDQRLLIGIEGKIKLRK 774

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +L  II + K+++  II K I      + +  +GC Y Q      P+  N +L L+K+
Sbjct: 775 LLSGIINLTKDLDIKIIQKGIETAEQHEVIKSLGCQYAQGYFYCKPVALNDLLPLIKK 832


>gi|306819786|ref|ZP_07453441.1| possible signal transduction protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552155|gb|EFM40091.1| possible signal transduction protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 780

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 97/439 (22%), Positives = 184/439 (41%), Gaps = 12/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K     I   +  D LTG+ NR   +D    +            +V VIDI ++K IN
Sbjct: 335 DIKGEYNKIFNMSRIDPLTGLNNRNYMMDVFDELDQDWKKTSK--LSVFVIDIVQFKTIN 392

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRK 639
           ++     GD VL  +   +  +     ++ R   N F ++  +   +  ++    + +  
Sbjct: 393 EITDHKTGDLVLKEIASSLKSMF-PNQLIFRSDSNEFAVLTDNKIYDKEQLRIKCLDIAV 451

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +  PI +         +IG   +T +     ++ KNAE A  ++K    N         
Sbjct: 452 LLTSPIIIDNFTFNPDIAIGCDRYTENTRNCLDIFKNAEYACGYSKKNFINSHSVTVYGD 511

Query: 700 FRSDRV----MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNISS 754
             +  +    MI++ L       E  + Y P   +  + ++G EAL++W  PK    IS 
Sbjct: 512 VIAGILSKKTMIEKMLHKINFEDEFIMYYQPQFDVDGKVLIGAEALLRWYSPKIGAMISP 571

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S+F+ IAEE  +I  +  F +      I  W ++     + + IN++ K L  ++  + +
Sbjct: 572 SDFIPIAEESNIIIKLVNFTILSAIPQIRKWNEEYG-TDLKMSINLSPKYLNTDKFLKDI 630

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q +I +    PS I+   +E+ +M   ++      +L  +GI + +DDFGT  S L+YL 
Sbjct: 631 QEIIKRENIKPSWIEFEITENSLMRAGKKMVEFFEKLVNMGIGVNMDDFGTGYSSLAYLK 690

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           +     +K    L+           I+ +++ M+K +   +IA+ +        L  +GC
Sbjct: 691 HFKLTKIKIARELIESIDTSISERKIVEAVLNMSKALGINVIAEGVEKIEQRDRLKDLGC 750

Query: 933 DYIQDSHVASPLGFNSILK 951
           + IQ      P+      +
Sbjct: 751 EQIQGFLYGKPVPATEFER 769


>gi|170751805|ref|YP_001758065.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658327|gb|ACB27382.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 675

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 203/434 (46%), Gaps = 15/434 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
             ++ +   A  D+LTG+ NR  FL      L           +++++D+D +K +NDV 
Sbjct: 245 ALVDEMRWRATHDDLTGLLNRAGFLQATENRLRT------GTLSLLMLDLDGFKFVNDVY 298

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VLV + RR+ + L    + ARL G+ F ++     + +  A  A  +  +++ 
Sbjct: 299 GHKAGDRVLVEVARRLNDALPENGLTARLGGDEFAVLYDPVTSGVPDAVMAANLITAVSQ 358

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
           P +       +  SIG  +      + +EML  A+ A+Y AK  G N    F        
Sbjct: 359 PFD-GFDAGRLGVSIGVHASRE--PSLTEMLSCADEALYAAKAAGRNRFRVFDSSLRERL 415

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  ++ DL  A+  +   + + PI       +VGLEALI+W+HP+ G I+  + +  A
Sbjct: 416 QMRRDLERDLSQALVENAPKVWFQPIYAGDGRTLVGLEALIRWEHPRLGWIAPPDLIAAA 475

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
               + +++  ++LE++   +     +     + + +N++ +++    + E +   +S  
Sbjct: 476 AMAGLTESLLRYILEQVCAMLEILHRRGLG-SVRVAMNVSPREMAQVPVDEIVIERLSLL 534

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+ +++  +E   + +    +  L  L + GI + LDDFG   S LS L  +  D +
Sbjct: 535 GLPPTMLEIEITEETAL-DIGAVQGKLQALSRAGIRVALDDFGIGYSSLSSLRQLKADRI 593

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +TG   ++ +  ++ +++ + + +   ++A+ +    D+  L  MGC ++Q  H
Sbjct: 594 KIDRSFVTGLGASDDKRGLVLAVLGLGRLLGLDVVAEGVESAEDLNILQAMGCPFLQGYH 653

Query: 940 VASPLGFNSILKLL 953
           +  P+    +   L
Sbjct: 654 LGRPMPVADLEATL 667


>gi|327439621|dbj|BAK15986.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Solibacillus silvestris
           StLB046]
          Length = 727

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 216/483 (44%), Gaps = 36/483 (7%)

Query: 500 RPMSNSNGDILRYIGIA-NDITEQKKSLEGILC---------------------NAFQDN 537
           +P+     ++   + +   D TE K+     L                       AF D 
Sbjct: 249 KPILTPQNEVSGILTLFNQDATELKQIDINYLNRLALLIQLAIKYAEQKIALSRLAFFDV 308

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            T +PN   F   L+ ++     +      V ++   ++ K+ D+ G   G D+L  +  
Sbjct: 309 ETNLPNLHHFKSELSELI-----NAGRSGMVAILHPTEFNKVVDLYGRNAGADILRQVAD 363

Query: 598 RIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           R+       D +++R S     +IL   N S     +   +     MP  +   EI +T 
Sbjct: 364 RMQVYFPNGDALISRFSN---SLILGKVNESNCFLAYNQHLESLTQMPYKIDGEEIYITL 420

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLA 714
            IG+  +  S +T  + +  A++A+ +A+ R G     +  +     ++ + I   L   
Sbjct: 421 KIGYTIFNQS-MTVEQSIHQADIALSNAQKRTGTSYSIYEDNSTKQLTEEMDILNQLAYG 479

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +++ E  +   P I     E+ G EAL +W+  K G IS  +++ IAE+   IKAI+L  
Sbjct: 480 LQHEEFEVYLQPKINFQTIEVEGFEALSRWNSSKLGFISPVKYIPIAEQTGKIKAIDLLN 539

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
            ++I   + +  ++     + I +NI+     D +  E ++ +  +    P  IKL  +E
Sbjct: 540 FKQILIWLENRMNENKKI-LPIALNISPDHFYDPDFLENIRNIFYQYNVPPHYIKLEVTE 598

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-E 893
           S+ + + ++++ +L +LR +GI  ++DDFG   S LSYL  +PF  +K + S ++     
Sbjct: 599 SIELVDFKKAKEILNQLRLMGIECSIDDFGIGFSSLSYLPQLPFSEIKIDRSFVSSMNEP 658

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+++II +AKNIE   IA+ I  E  +  L ++GC   Q  +   P+      +LL
Sbjct: 659 GMYAIVQTIIQLAKNIEMRPIAEGIETEEQLAMLQQLGCPAGQGYYFYKPMSITEAEQLL 718

Query: 954 KER 956
             +
Sbjct: 719 DTQ 721


>gi|152982802|ref|YP_001354924.1| hypothetical protein mma_3234 [Janthinobacterium sp. Marseille]
 gi|151282879|gb|ABR91289.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 558

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/433 (24%), Positives = 200/433 (46%), Gaps = 8/433 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +  L  +   A  D  T +PNR + LD L   L    ++ NL   ++V+ +    ++   
Sbjct: 118 RAYLRHLKWIARHDLATQLPNRSALLDSL-AALPKVKSNSNLHV-LVVVSLQNAMELKSA 175

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  V ++V+     R   +L+    + R+   +   IL+   ++  I      + +   
Sbjct: 176 FGFDVIEEVIRQSAARYTNILQDKVQVYRIDPEQ-LGILVKNRDAQTINLLLAELVRGAR 234

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFR 701
            P       I   + +G+A+++    +    L+ AE A+  A          S   S+F 
Sbjct: 235 QPYQFNAIPIHADSRLGYATFSKVVQSPEFYLQRAESALISADEDALDCVAYSPETSNFA 294

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            + + I   L  A++  +L L Y P I +   E+  +EAL++W+HP+ GNI  + F+  A
Sbjct: 295 KENLSILGSLMSAIKEGQLSLHYQPKICIRTGEVHSVEALMRWNHPERGNIPPAIFIPRA 354

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  I  F LE+  + I+ WR Q     + I +NI+ ++LL     + + +L+ + 
Sbjct: 355 EQSTLINLITEFALEQAMKQIVLWRQQGIH--LPIAVNISPRNLLQPGFSDLVLSLLQRY 412

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   ++L  +E  +M +  R+ + L RL +  I++++DDFGT  S L YL  +P   +
Sbjct: 413 EVSGQSLELEVTEGALMTDIARTIIELSRLAEAKITISIDDFGTGYSSLQYLHQLPISLI 472

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    + + A  I+ + + +A  +    IA+ +  +   K L+ +GCD  Q   
Sbjct: 473 KIDQSFVRRLPDDKGAVHIVEAAVTLAHKMGMQTIAEGVEEQSAYKLLSDLGCDIAQGYM 532

Query: 940 VASPLGFNSILKL 952
           ++ PL      K 
Sbjct: 533 ISRPLPAAEFEKW 545


>gi|225389582|ref|ZP_03759306.1| hypothetical protein CLOSTASPAR_03330 [Clostridium asparagiforme
           DSM 15981]
 gi|225044356|gb|EEG54602.1| hypothetical protein CLOSTASPAR_03330 [Clostridium asparagiforme
           DSM 15981]
          Length = 927

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 207/435 (47%), Gaps = 13/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A+ D +  + NR  FL     ++     D   R ++  +DI  + + ND+ 
Sbjct: 493 RYRKQVEQLAYSDPVFNMGNRPKFLRDTNMLISY---DRKRRFSLYCVDICSFSQYNDLF 549

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             ++GD++L  + RR+         L R++G+ F  + +   ++      A  ++   A 
Sbjct: 550 SASIGDEILHEVRRRLSRPF--GSYLYRINGDVFLGVSL---STESAQSVAARLQDLFAA 604

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRS 702
           PI + +    +   I    +     T  E+L + + A+  AK  G    + + R+     
Sbjct: 605 PITVGKLSFPLQIRIAACWYPEHGETPGELLDHIQSALRFAKESGQAIAIYNGRLDEMIR 664

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I   L  AV+   L + Y PI+ L + E    EAL++  + K G  S+ + + +AE
Sbjct: 665 TEADILGRLKDAVQQKTLEVWYQPIMLLEENEYTAAEALVRLPNGKGGYFSAGQVISLAE 724

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              M++A+  ++L +    +  + D+  +    + IN++ + LL       +  LI  + 
Sbjct: 725 RNGMVEALGDYVLTQACAFLHEYGDRLGIR--RMGINLSVQQLLVGNSAGHLLELIGSSG 782

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R+ L  +ES+++ + +++  +LG+LR+ GI + LDDFG   S L+YL  +P D +K
Sbjct: 783 MDPRRVTLEITESILIQSIDQAAQVLGKLRQAGIHVALDDFGVGYSSLNYLSNLPVDILK 842

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL       +K+ A+L+SI+ MA+  +  ++A+ +  + +   +T  G  YIQ  + 
Sbjct: 843 IDRSLTKQILTDQKQFALLKSIVEMARINDLMVVAEGVETQAEQAIITSAGVQYIQGYYY 902

Query: 941 ASPLGFNSILKLLKE 955
           A P+    + + LK+
Sbjct: 903 ARPMPGEKLTEFLKQ 917



 Score = 54.2 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 5/158 (3%)

Query: 526 LEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               L  A   D  TG+ NR  F   L   L       N    +    I+ Y +    +G
Sbjct: 295 QRRALLKATYVDKDTGLYNRIGFTAALGDWLKQ----GNTPIMLFYFSIEGYTQAIRRIG 350

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                  L  ++ RI   +  P +  RL    + + +  E +  +  DFA  +     + 
Sbjct: 351 PEEETAFLKGISGRIDGFIHNPFLAGRLDAGSYIVAVREEMDQTQQEDFARGLSLEFLLQ 410

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           + + E +  + A   +A     +  + + + +   A Y
Sbjct: 411 VRINEEKNFLMARYQYACCRPGEDEAGKAISDLIHAYY 448


>gi|160876428|ref|YP_001555744.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160861950|gb|ABX50484.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
          Length = 775

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/441 (24%), Positives = 203/441 (46%), Gaps = 18/441 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    L      +   + L   ++++DI  ++
Sbjct: 341 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQHL------ADLKNELSGAMVLLDIKHFR 391

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +LV   RR+ +L   PD+LARL G+ F ++         +       
Sbjct: 392 HINDIIGFANADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLL----KS 447

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++T   G      +      +++ AE+A+  A             
Sbjct: 448 LDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQG 507

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I  DL + +  ++LYLV+ P + L   +  G EALI+W HP  G I   E
Sbjct: 508 ADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE 567

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  ++ ++L++  + +++W+ +     + + IN+++ DL+D  L   + +
Sbjct: 568 FIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRG--MLLKLAINLSAHDLVDTRLPNQIAS 625

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L R R +GIS+ +DDFGT  S L+YL  +
Sbjct: 626 LLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGISVAIDDFGTGHSSLAYLKIL 685

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK + S +       + + I+ + I +   +  T++A+ +     ++ L  + CD 
Sbjct: 686 PVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVEILRNLNCDI 745

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL         + 
Sbjct: 746 IQGYVFSKPLKAAEFDLWFEA 766


>gi|315268618|gb|ADT95471.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Shewanella baltica OS678]
          Length = 768

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/441 (24%), Positives = 203/441 (46%), Gaps = 18/441 (4%)

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DI  ++K    ++  +  D+LTG+ NR +    L      +   + L   ++++DI  ++
Sbjct: 334 DIEAREK---DLVYQSRHDSLTGLLNRFAAKQHL------ADLKNELSGAMVLLDIKHFR 384

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND++G A  D +LV   RR+ +L   PD+LARL G+ F ++         +       
Sbjct: 385 HINDIIGFANADTLLVLFARRLEQLAPTPDLLARLDGDSFLLLYSQGIRPEHLL----KS 440

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFR 696
              +  P  +    I++T   G      +      +++ AE+A+  A             
Sbjct: 441 LDMLESPFPIQGSNISLTVRAGLLEIDGNGADIDVLVRRAEIALNQACLEEQRIVSYRQG 500

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + I  DL + +  ++LYLV+ P + L   +  G EALI+W HP  G I   E
Sbjct: 501 ADEKYQRELTIIRDLPIGLAQNQLYLVFQPKVDLHLNQCTGAEALIRWQHPTLGFIPPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  ++ ++L++  + +++W+ +     + + IN+++ DL+D  L   + +
Sbjct: 561 FIQLAENSGNIDIVSQWVLKQSIKQLVAWQQRG--MLLKLAINLSAHDLVDTRLPNQIAS 618

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+         + +  +E  VM + +    +L R R +GIS+ +DDFGT  S L+YL  +
Sbjct: 619 LLKDNNLPSGALCIEVTEGAVMKDAQTVVSVLQRFRDMGISVAIDDFGTGHSSLAYLKIL 678

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK + S +       + + I+ + I +   +  T++A+ +     ++ L  + CD 
Sbjct: 679 PVNEVKIDRSFIKDMLTNSQDVMIVNTSIQLIHGLGFTVVAEGVEEPEGVEILRNLNCDI 738

Query: 935 IQDSHVASPLGFNSILKLLKE 955
           IQ    + PL         + 
Sbjct: 739 IQGYVFSKPLKAAEFDLWFEA 759


>gi|255658648|ref|ZP_05404057.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Mitsuokella multacida DSM 20544]
 gi|260849023|gb|EEX69030.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Mitsuokella multacida DSM 20544]
          Length = 1574

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 110/576 (19%), Positives = 233/576 (40%), Gaps = 41/576 (7%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLP 454
           ++ I     R    + G G  +         +    ++  +    +           +  
Sbjct: 3   AEPIKKKLHRYYDMIAG-GVCLVRQSAEEQILFVNKEMLKLYQCKTEQEFYQLTKGRFAG 61

Query: 455 YIHINDRDNFRTILD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY- 512
            +  +D       ++        G     FR    +  +  +    +     NG +  + 
Sbjct: 62  LMEADDYMPLEARMNSRHGEAAEGYAFLAFRCYTKEGVYLHVEGTFQ-----NGTVPGFG 116

Query: 513 -IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL--DLSATDDNLRPTV- 568
            + + N + +++      L     D +TG+ N  +F  R+   +    +    +    + 
Sbjct: 117 KVWMLNLVNKERSMAVSDL-----DPVTGLLNMHAFYQRVEKKIDAQRAKRQPDDTGMLY 171

Query: 569 --MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             + +++  +K  N+  G+  GD +L  + + +         + RLSG+ F + +  +  
Sbjct: 172 CPIYLNLTNFKVYNETHGLYEGDRMLRKIGQILKSKF-PSSYITRLSGDNFALFVPRQGL 230

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT----SSEMLKNAELAMY 682
            +KI D   A+   I +P         +T   G  S+     T     +     A+LA  
Sbjct: 231 EIKIRDLCQAVNNEIHLP--------NITMKAGIGSFDEEAGTRRRAITAYFDQAKLACD 282

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
             K         +  S  RS    I   ++L  A+E   + + Y P+IR M  ++ G EA
Sbjct: 283 SIKKDATRFAAFYHDSMRRSMADRIFILDNLDRAIEQGHIQVYYQPVIRTMTGKLCGCEA 342

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +W  P  G IS + F+ + EE  +I  ++ +++E++   ++ ++ + N+P + I +N+
Sbjct: 343 LARWIDPVKGTISPASFIPVLEESRLISRLDRYVIEKV-AQLLRYQLENNLPMVPISVNL 401

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +  D +  +    ++ ++ +       +++  +ESV++ N       L +  + G  + L
Sbjct: 402 SRYDFILMDPLAFVEHIVEQYHIPRYYLRIEVTESVLVKNRHLLIDKLRQFHQSGYQVWL 461

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DDFG+  S L+ L    FD +K +  L+    E    I+RSI+ MAK +   ++A+    
Sbjct: 462 DDFGSAYSSLNVLQNYEFDELKIDQGLLRYFNEDSRKIIRSIVLMAKEMGIHVLAEGAET 521

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  +  L  +GC+ IQ  +   P+ +     LL+E 
Sbjct: 522 KEHVDFLRSIGCEKIQGYYYGRPMPYE----LLREH 553



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 16/170 (9%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +  +  +   +++D LTG+ NR++ L  + TI       D         DI+  K  ND 
Sbjct: 1418 RDMIRRLETYSYRDQLTGVGNRRALLSFIRTI------PDGTSLAFFFGDINGLKVENDT 1471

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD ++      +         + R+ G+ F +++ +          A AM K + 
Sbjct: 1472 KGHEAGDLLIKKAATVLVAAAGPE-RVFRMGGDEFLLVVENITKQE-----ADAMLKELR 1525

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
                     + +  ++  +       +   +L  A+  MY  K +   H 
Sbjct: 1526 ATYARQHVSVAIGCTVQVSPL----RSIDTILSEADALMYENKRQMHAHH 1571



 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 16/172 (9%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSGDIVWDWDIV 424
             L      I     FT++   LA   + Q + +  +     ++L ++   D ++  D  
Sbjct: 656 QYLRLNAQKIAATPDFTLMLARLANITYDQDLTAFHQYENVFRNLMLVY--DGIYFIDRQ 713

Query: 425 RDRVTTTPDIATIL--GLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFV----GYRRG 477
           R  +     + ++   G     +      +  + IH  DR  FR  LD  V      R G
Sbjct: 714 RKALYVIESMTSLWQAGDVVDDLKKMADTYARHYIHPEDRARFRRFLDPAVIYQQAERSG 773

Query: 478 RLQY--EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           R +    FRV+  D +F WMI     +  S    +  I +  +I E++++L 
Sbjct: 774 RSEAIEMFRVKRPDGRFVWMIFDAIVIYKSTAKDI-LICVRENIWERQENLH 824


>gi|284048054|ref|YP_003398393.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidaminococcus fermentans DSM 20731]
 gi|283952275|gb|ADB47078.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidaminococcus fermentans DSM 20731]
          Length = 835

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 90/542 (16%), Positives = 219/542 (40%), Gaps = 24/542 (4%)

Query: 422 DIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           +   + +     + T+ G +S    +     ++   ++  DR+     +   +   + + 
Sbjct: 31  NPGEEILYANTRLCTMFGCSSLEEFLELSGGSFATLVYPEDRNRVEREIREQILENKSKT 90

Query: 480 QYE-FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            +  +R+   D     +      +       + Y+    D   + ++ +        D+L
Sbjct: 91  DFVNYRICKNDGSIRRVEEFGHRVYVDGVGPVFYV-YFLDYDNKYRAYD-------IDSL 142

Query: 539 TGIPNRQSFLDRLTTILDLSATDDN-LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           TG+P +  F+    T+L L+A D    +   +  +I  + + N   G   G+  L+ +  
Sbjct: 143 TGLPGKNRFIQHAATVLALTALDARAPQMAFVYANIHNFNRYNLRNGSEKGNQFLIKMAG 202

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + +      +++R + + F ++    +   ++   +  + +              +   
Sbjct: 203 VLQKNF-PNRLISRFTDDHFMVLTTLSSLEKRLPVISREIHELYDSS--------HLEVK 253

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
            G      + +        A+LA    +     H+  +  +   + R+   + +    A+
Sbjct: 254 FGIYPVEDAYMPVESACGMAQLACDRIRDIPDRHISFYTKAMGEARRLRSYVIDHFQKAM 313

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +N  + + + P+IR +   +  +EAL +W  PK G IS   F+   EE   I+ ++L++L
Sbjct: 314 DNRWIQVYFQPVIRSISGTMASVEALARWVDPKKGTISPGIFIPYLEESRQIRKLDLYVL 373

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E I R +   + +     I    N++  D     + E ++ +  +     + + +  +ES
Sbjct: 374 EEICR-MYQGQKEMGKTVIPTSFNLSRLDFFQGSIFEDVETIRERYQMPRNMLYVEITES 432

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             +   +  R  + R R+ G  + +DDFG+  S L+ L    FD +K + + ++  TEK 
Sbjct: 433 AFVTEGDVLRQEIDRFREAGYEVWMDDFGSGYSSLNTLKDYTFDEIKIDMAFLSQFTEKS 492

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             I+R+I+ MAK I    + + +     ++    +GC+ +Q  +   P+    +  + ++
Sbjct: 493 QDIIRAIVRMAKEIGIHTLVEGVETREQVEFARSIGCELLQGYYFGKPMALPELKHVRRK 552

Query: 956 RF 957
           + 
Sbjct: 553 KQ 554



 Score = 39.9 bits (92), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 453 LPYIHINDRDNFRT------ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              I+  DR+ F        + D       G +   FR    D ++HW +  I P+S  
Sbjct: 742 RHLIYPEDRERFLEFNDRSTLQDRIRKNPAGTVSGFFRTLGNDGKYHWDVHSIFPVSRE 800


>gi|309774820|ref|ZP_07669841.1| putative response regulator/sensory box/GGDEF domain/EAL domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917378|gb|EFP63097.1| putative response regulator/sensory box/GGDEF domain/EAL domain
           protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 728

 Score =  348 bits (892), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 187/442 (42%), Gaps = 20/442 (4%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I + K+ L+        D+LTG+ N+  F      +L       +L   +  ID + +
Sbjct: 10  QEINDLKQELKQYK---EYDSLTGLYNKHGFYAHADYLLT---AFPSLSYQLFTIDFEHF 63

Query: 577 KKINDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           K IND  G   GD++L+S    +     +      R+  + F I+++  +          
Sbjct: 64  KLINDQYGTRRGDELLMSFAELLFKSFQQEETACGRIHSDIFAILVLQGHEKE------- 116

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + + I        + + V+  IG        I  + M   A +A    K +       +
Sbjct: 117 -ICEDIGTIFRQCAQGLDVSYVIGVYDIKDRHIPIALMCDRAMMAANSIKGKYEKRWCRY 175

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S      +   +  ++  A+E+ E  L   P   +   +IVG E L++W HPK G I 
Sbjct: 176 DDSMRNVLMEEQELLTNVDNALEHGEFQLYIQPKCNMKTRKIVGGEVLVRWIHPKKGLIP 235

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ I E+   IK ++ ++ E+ A  +  W      P + + +N++  D+++  +   
Sbjct: 236 PKDFIPIFEKNGFIKKLDAYVWEQTAIWLHKWSKT--HPVLPVSVNVSRMDIMEMNVYTY 293

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            Q LI K    PS +++  +ES   G  E     + +L   G ++ +DDFG+  S L+ L
Sbjct: 294 FQDLIRKYKLDPSWLEIEVTESAYAG-SEEIIHTIDQLMNHGFTVLMDDFGSGYSSLNIL 352

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             I  + +K +   +     K   IL SI+ MA+ +   +IA+ +  +     L  +GC 
Sbjct: 353 KDININILKLDMRFLDSQNSKSRNILDSILQMARWLGMKVIAEGLENKDQADFLLNIGCM 412

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           + Q  +   P+      +LL +
Sbjct: 413 HAQGFYYYKPMPLREFEQLLLQ 434



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 10/160 (6%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I +  I  V       + +    E   +A+  S   +++ DI     + + +      L 
Sbjct: 566 IVYASISDVSDYMQTMEDLRLSRESFRIAMEASQITIFELDIENRVASYSQNAMRAFDLD 625

Query: 442 SGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
              M      ++    +     D FR+I +        R     R   A+       I +
Sbjct: 626 DCIMINAPEGFIEQGSVCEGYEDIFRSIYNDIYNG-SPRASCVIRAHMAEGDVF-NRITL 683

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             + N  G  +R +G   +ITE+   L         D  T
Sbjct: 684 TAIQNEKGKSVRAVGCVENITEEILRLHP------HDPDT 717


>gi|313904273|ref|ZP_07837651.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium cellulosolvens 6]
 gi|313470823|gb|EFR66147.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Eubacterium cellulosolvens 6]
          Length = 1573

 Score =  348 bits (892), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 99/536 (18%), Positives = 225/536 (41%), Gaps = 22/536 (4%)

Query: 426 DRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-QYE 482
           D +    ++  + G +S    +         +I   D  +   ++ S +   + R     
Sbjct: 31  DILYVNRELLELTGCSSKEDFITLTAGKMKGFIQKEDFWSTIHVVSSQLEREKNRFSHIS 90

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           FR+   +     ++   R + +     +  + +    T+ K            D LTG+ 
Sbjct: 91  FRIYNCERAEITVVSSGRIVDDPELGKICVMSLMEVNTKAKTL--------LTDALTGLM 142

Query: 543 NRQSFLDRLTTILDLSATDDNL-RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
               F + +T  L  ++    L +  ++  D+  +K  N   G++ GD +L  +   +  
Sbjct: 143 GMHRFRELMTEELKKASERGELSKYALLFFDLTNFKLFNLKFGVSAGDKLLCQMAEILKS 202

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            +     +AR S + F ++   ++ +  I    I   +     +      + + A I   
Sbjct: 203 -VYGNRFVARFSDDHFVVLTDRQDVTESILVVNIKAGEIDQNAM------LQLKAGIRRL 255

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
           S    K+++  +   A+LA    K    N+   +         +   +  ++  A+    
Sbjct: 256 SDEDVKVSAEMICDQAKLACDSIKQDATNYTCEYNDQLTSQMELKAYVNANIEKAISKGY 315

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + + Y P+IR +  ++ G+EAL +W  P++GN+S +EF+   EE  +I+ ++ F++  + 
Sbjct: 316 IRVYYQPVIRTLTGKLCGVEALARWIDPEYGNLSPAEFIPFLEEAHLIQMLDNFVIYEVG 375

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R +    D  ++P +    N +  D +  +  E ++ +I K     +  ++  +ES++M 
Sbjct: 376 RQMREQLDH-DIPVVPCSFNFSRMDFIMGDPFEEVENVIRKFGLQRNLFRIEITESMIMQ 434

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL 899
           +  R    + +    G  + +DDFG+  S L+ L    FD +K +   +    EK  +I+
Sbjct: 435 DQARIMDQVNQFHDCGYEVWMDDFGSGYSSLNTLKDFHFDEIKIDMLFLKDLNEKGRSII 494

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            S++ MAK +    +A+ +  +  ++ L  +GC+ +Q  +   P+  + +    +E
Sbjct: 495 TSMVSMAKKLGVHTLAEGVEYDEQVEFLKSIGCEKMQGYYYGMPMSGDKLYDFCRE 550



 Score = 95.0 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 19/178 (10%)

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            + RYI I       +  L  +     +D LTG+ NR++F D    +       +     V
Sbjct: 1402 LSRYISILI---RNRDMLRRLDLLGNRDALTGVMNRRAFRDMTRHM------HEKSGLVV 1452

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            +  D++  K +ND  G   GD ++      +  ++     + R+ G+ F I+  S++   
Sbjct: 1453 IYGDVNGLKTVNDTQGHEAGDQLIKVAADVMSSIVGAE-QVFRMGGDEFIIVTQSKDKKE 1511

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                 +  + K +            ++ ++G            E++  A+  MY  K 
Sbjct: 1512 -----SDELMKLLRDSFEYKG----ISVALGCVYNPGEIKDVGELMYEADRRMYINKQ 1560



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 103/298 (34%), Gaps = 22/298 (7%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW-DIVRDRVTTTPDIATIL 438
            +L G   + +  + G   Q    DG+     +  + DI + W D     V          
Sbjct: 818  LLAGMADMHNFDSEGREWQ---RDGDLWRALMENT-DIKYFWKDRQCRFVGVNKAFLDYY 873

Query: 439  GL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWM 495
            GL ++  + G     + + H  D + FR      +           E  +R      H +
Sbjct: 874  GLKSAKEVIGKTDQDMKW-HP-DNEPFRDDERKVIERGEVVQGSVSECMIR---GCLHKI 928

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT-- 553
            I    P+   +G I   IG  +D+   +      L    +D +TG  N   F   L    
Sbjct: 929  IANRFPIY-RDGKIDGLIGCFDDLDSIQGCRYDSLYL--RDPVTGFMN---FRGALDAGT 982

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
              + +   +      ++IDI +Y +     G    ++++  +  +I +       ++R S
Sbjct: 983  RFEENYRKNGENYIGILIDISEYNRFLSSYGEKAANELVRFVGEKIWQYADTGAAISRHS 1042

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
              RF  I    +++  + +    +   I     +     T+  +   A  +  + T+S
Sbjct: 1043 ECRFQ-IFEKGSDTAAVRERLQRLADEIHTVHEVGGYTCTLYMNYSIAVGSEVETTAS 1099



 Score = 42.2 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRR------GRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               I+  DR  F     +   +RR        +   FR+R  +  + W+ +    +   
Sbjct: 736 MKELIYPGDRKRFDDFFQTDAIHRRIRLGKHATISDVFRIRTENGTYEWIEMTAFILQQE 795

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNA---FQDN 537
             + +  +G   +I E   + + +   A     D+
Sbjct: 796 REEKILLLGKPAEIEEYLNNADLLAGMADMHNFDS 830


>gi|319956416|ref|YP_004167679.1| diguanylate cyclase/phosphodiesterase [Nitratifractor salsuginis
           DSM 16511]
 gi|319418820|gb|ADV45930.1| diguanylate cyclase/phosphodiesterase [Nitratifractor salsuginis
           DSM 16511]
          Length = 601

 Score =  348 bits (892), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 111/607 (18%), Positives = 232/607 (38%), Gaps = 24/607 (3%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                 +    I   ++ G VL  +L+ +   +   +    ++               + 
Sbjct: 2   FQKWANIPEWAIGSGILAGSVLAALLLFYRKKKKTRSFINTAEFKA-----FKKTCQTAE 56

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRNWLPYIHINDRD--NFRTILDSFV 472
           + V   D     V        +  +  G  +    +    Y +  +++      ++    
Sbjct: 57  ETVIIVDRTYHIVFANNAAKMLYPIDRGQNLKEITKETFRYYNPQEQEWLPLDELIHRHR 116

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +             +     + +++  + + +   +  + +  D + ++  ++    N
Sbjct: 117 KRKTEHASLFTLQLDKEGT-GQVQVKVSSIKSEDNQHMDIV-VVRDTSCEQSLVKLQNTN 174

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +F    +G+PNR      + + +  S      R  V+V+++D   ++   LG    + +L
Sbjct: 175 SF----SGLPNRYKAFADIGSRIASSTR--RTRFAVIVLEMDNVSRLRGALGYNDMERIL 228

Query: 593 VSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
             +   I E+ +  +I       + F +IL    +   I        K +    +  +  
Sbjct: 229 SHIANAIREMEEEGNIKGYHFDYSTFVLILDQPKDIHSIHLTISRFGKLVEQIKSTAKEM 288

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKE 709
             ++ S G + +     T +++L +A  A+  A+  G  H    +          + +  
Sbjct: 289 FRLSFSTGVSLFPEHA-TVNDLLNSAFAALAKAQEEGSGHTVIAQKDKLLQSDAVLTLSR 347

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++   ++N E  L + PI    D  + G E L++W H + G      F+  AE+  +I  
Sbjct: 348 EIKEGLKNREFKLYFQPIFSSQDLRLAGAEVLLRWKHIE-GMRHPGMFIPFAEKSGLIID 406

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++LE   R +  W       PI + IN++ ++L   E    +  ++ +     S IK
Sbjct: 407 IGYYVLEETLRMLTHWNHS-GFLPIQLNINLSLRELESIEFMNHLNRVLYQYDIGDSGIK 465

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E   M NP  +R  L +L ++GI + LDDFGT  S  S+L   P DT+K + S + 
Sbjct: 466 YEITEYASMHNPILTRERLEKLHQMGIKVALDDFGTGYSSFSHLAEFPIDTLKIDKSFVD 525

Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              + R    I+ SI  +  ++   ++A+ I      K L +MG D  Q  + A P+   
Sbjct: 526 NMVQDRSKQHIISSITKLGHSLGMNLVAEGIETRDQAKLLQQMGVDLFQGYYFAKPMSQL 585

Query: 948 SILKLLK 954
               LL 
Sbjct: 586 EFQYLLT 592


>gi|149194315|ref|ZP_01871412.1| hypothetical protein CMTB2_06936 [Caminibacter mediatlanticus TB-2]
 gi|149135490|gb|EDM23969.1| hypothetical protein CMTB2_06936 [Caminibacter mediatlanticus TB-2]
          Length = 721

 Score =  348 bits (892), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 107/435 (24%), Positives = 206/435 (47%), Gaps = 16/435 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +       +D LT    R+  ++++   +     DD +    ++IDIDK   +NDVLG
Sbjct: 292 LKQEAQNLILKDPLTNTYLRKVLIEKMKEYI-----DDKIPFAFVLIDIDKLSIVNDVLG 346

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD+VL  L   + +L      ++R   + FG+I+    +  K+      + K     
Sbjct: 347 FWAGDEVLKKLANYLNDL---NAFISRYGSDEFGLIIKG--DKEKVYKELDKLIKFNDNL 401

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--S 702
           + +    + +  SI    +        E++   E A+  AK +GGN +E    +      
Sbjct: 402 LKINGSTLFMPISISVGFFPEDASKLEELILKTEKALKEAKKKGGNKIEYVSENLNLLPK 461

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           D + I+++L  A+ N E  + Y PII + ++++ G+EAL++W   K G +S ++F+ I E
Sbjct: 462 DYLEIQKELKEAIINDEYVMYYQPIIDIKNKKVWGVEALLRWKSKKRGLVSPAKFIPILE 521

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  +   +++++   +  + +      I   +N++   LL   +   +     K  
Sbjct: 522 ESGLINEVGDIVIDKVIDSLKEFEE--YNLHIAFSLNLSVTQLLSKNIAREIIKKCDKKK 579

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +  ++ +  +ESV+M N E   + L   +K  I + +DDFGT  S L+YL  IP   +K
Sbjct: 580 INKEKLVVEITESVLMENLEILNVQLEEFKKNNIKVEIDDFGTGYSSLAYLKRIPVYALK 639

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +      E+ ++I+ +II +AK+++   IA+ +  +    +L  MG D IQ  + 
Sbjct: 640 IDREFVKDILVDEEDLSIVDAIISIAKSLKKETIAEGVEEKEQFLKLNDMGVDKIQGYYF 699

Query: 941 ASPLGFNSILKLLKE 955
           A P+    ++K L+E
Sbjct: 700 AKPMTKEELIKYLEE 714


>gi|291556412|emb|CBL33529.1| diguanylate cyclase (GGDEF) domain [Eubacterium siraeum V10Sc8a]
          Length = 1195

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 109/527 (20%), Positives = 217/527 (41%), Gaps = 32/527 (6%)

Query: 440  LASGSMHGPIRNWLPY-IHINDR---DNFRTILDSFVGYRRGRLQYEFRVR-AADNQFHW 494
            L S S+      WL   +H +D+   D+F   + +    +         +R   D +  W
Sbjct: 677  LKSSSVGPLRAIWLSGAVHPDDKLIYDSFCRKIKNSFDDKITDTSLSVNIRLYEDGKPVW 736

Query: 495  MIIRIRPMSNSNGDILRYIGIAN--DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
              I ++ +S  +G +    G     +I E   S+E +      D      N   F D ++
Sbjct: 737  YGIYVQ-LSGRDGKMEEIAGSIKALEINE-IMSIEILDYYTTTD------NPIMFHDMIS 788

Query: 553  TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
              L       + +  ++  DI ++K IN+  G   G ++L  ++R++        + AR+
Sbjct: 789  QRLT---AYPDTKFALVQFDIKRFKLINENYGEDAGTEMLQFISRQLSNFCGKKQVGARM 845

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            SG+ F  +L    +   +      +++ +        R+ +     G        I+   
Sbjct: 846  SGDVFA-LLTPYEDKDGLLSVVSELQRCLK-----NFRQYSYEFVFGIYLIEDRSISVRT 899

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
            M   A +A    K      V  +  +  ++ +    ++  +  A++N+E  +   P   +
Sbjct: 900  MCDCAAMARQSIKKNALESVAFYNKNMQKAIKERKFVESHMKKALDNNEFIIYLQPKFSI 959

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               E +G EAL++W  P+ G I  + F+ + EE   I  ++ ++ E     +  W D+ +
Sbjct: 960  SSGEAIGYEALVRWQSPERGMIYPNGFIPLFEENGFITKLDAYVWECACMVLRDWIDR-H 1018

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              P+ I +N++  +L D    + +  LI K       ++L  +ES  + N + +  +  +
Sbjct: 1019 FTPLPISVNVSRANLDDESFLDVLDGLIEKYRLPKHLLELEITES--IEN-DATLRMTEK 1075

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKN 908
            +++ G  L +DDFG+  S L+ L    FD +K +        S ++   I+   I M+K+
Sbjct: 1076 IKEHGFVLLMDDFGSGYSSLNTLQDTRFDVLKLDREFFSTHMSNDRGKKIIMHTISMSKD 1135

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   +IA+ +      + L   GCD  Q    A P+      K LK 
Sbjct: 1136 VGLGLIAEGVETADQAQFLENCGCDTAQGYLYAKPMPVQEAEKYLKN 1182



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 19/274 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT I NR+ + +R++  +     ++     ++  D+D+ K+IND  G + GD  + ++
Sbjct: 463 DPLTNIYNRRGYFERISEFM---HGNEKCDIILVSCDMDRLKEINDTYGHSEGDIAIKAV 519

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINLLEREITV 654
              I        I AR  G+ F + +    +   +++     ++  I        +   V
Sbjct: 520 ADAIKTGCGKDGICARFGGDEFILTVPYNTDKQRELSRLVGEIQTEIDKFNRSAGKPYEV 579

Query: 655 TASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIK-- 708
           + S+G +  T S     +E++++ +  MY  K         V      +      +++  
Sbjct: 580 SISVGGSYGTVSSVEDVNELMRSTDRLMYEQKRMKKGERAPVFQPVPEAQEKPDEVLEGY 639

Query: 709 -EDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +             Y   +      I              G + +            
Sbjct: 640 RSRIHEIFSQFDRCTYFYMDYLNFKWYIIENDHMPECLKSSSVGPLRAIWL------SGA 693

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           +   +  + +   R I +  D        + +NI
Sbjct: 694 VHPDDKLIYDSFCRKIKNSFDDKI-TDTSLSVNI 726


>gi|288919148|ref|ZP_06413487.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288349492|gb|EFC83730.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 832

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 205/459 (44%), Gaps = 35/459 (7%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR----------------- 565
           + +   +   AF D LT +PNR  F  RL  +L                           
Sbjct: 359 RAAERELHHRAFHDPLTELPNRVLFQHRLRGLLSDRRRAAGRGAGAGSGSASGSASGSAS 418

Query: 566 -------PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    ++  D+D +  +ND LG A GD +L ++ +R+   ++  D++AR+  + F 
Sbjct: 419 GAGPGADIAILYCDLDDFSVLNDSLGPAAGDHLLRTVAQRLLHCVRATDLVARIGSDEFA 478

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           +++     S ++      +  ++  P++   R+ ++ AS G A    +  T   +L++AE
Sbjct: 479 VLMAGGGESPEV--VGARVLAALRRPVSFGGRQRSIRASAGLAVARRTHETGEALLRHAE 536

Query: 679 LAMYHAKHRGGNHVESFRVSSF-----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A+  A+  G + + ++R               +   L     ++   + Y PI+RL D 
Sbjct: 537 TAVQVARCSGRDRLVTYRPGMASPEAGAHLADALATALRRGGSSAGFDVHYQPIVRLRDG 596

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             V LEAL +W  P  G +S   F+  AE   M+  ++  +L R   ++           
Sbjct: 597 RAVALEALARWTDPGRGPVSPGTFVAAAESGGMVGLLDDLVLTRACTEVA--LAYPTGSQ 654

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +N+++  + D  L + +  +++ +   P R+ +  +E+  + +   +  +L  +++
Sbjct: 655 LRLHVNVSASRIGDTRLRDTVARVLAASRLDPRRLVVEVTETSRITDLAAAADVLTEVKE 714

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRIAIL-RSIIPMAKNIET 911
           +G+++ LDD G   + L+ L  +P D VK + +L+       R + L RS+I +A ++  
Sbjct: 715 LGVTIALDDVGAGNTNLAVLHRLPVDVVKLDRTLIDPPMDGSRYSNLRRSMIDVAHSLGA 774

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +IA+ I  E  + EL R+GC+  Q    A P   + + 
Sbjct: 775 VVIAEGIEREAQLVELDRLGCELGQGFLFARPGPLSGLA 813


>gi|84514849|ref|ZP_01002212.1| sensory box-containing diguanylate cyclase, putative [Loktanella
           vestfoldensis SKA53]
 gi|84511008|gb|EAQ07462.1| sensory box-containing diguanylate cyclase, putative [Loktanella
           vestfoldensis SKA53]
          Length = 562

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 102/440 (23%), Positives = 193/440 (43%), Gaps = 13/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +++   +L  A  D LTG+PNR + +  LT  +     ++    T + + +D +K IN
Sbjct: 114 ALQQTNVRLLYLANHDTLTGLPNRANLIAILTERMTRGEAEEQ---TFLFVGLDGFKSIN 170

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GDD+L+++ + +   +    I+AR+ G+ F I+                +  +
Sbjct: 171 DSAGHESGDDLLIAVGQALRTCVDGDQIVARIGGDEFAIM-----TDEAAGPMLRRVMAA 225

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--S 698
           ++ P ++  R + V ASIGF      +     +L +A +A+  AK+ GGN  + F     
Sbjct: 226 LSDPFDVKGRRLKVQASIGFLVLDHHRTDPMAVLADATMALQVAKNEGGNRAQEFTPALR 285

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   ++ ++  A+ N EL   + P IRL D  + G+E L +W HP  G I+   F+
Sbjct: 286 EAARHAQQLQMEIPDAIRNGELEPWFQPQIRLTDGALHGVEVLARWRHPIRGLITPDRFL 345

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E   M   ++L + +      + W+      P+ + +N A   + D  L E    ++
Sbjct: 346 PAVERAGMTVEMDLAIWQAAMVQAMKWQTMNIWDPV-LSLNAAPATIADPYLIERFLLVL 404

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +   P ++ +   E+ ++        + +  L + GI+L LDDFGT  + L  L  +P
Sbjct: 405 RNSGLRPEQVIVEVLETTLIDGTSGMAAMNIDSLSECGIALELDDFGTGYASLCRLTQLP 464

Query: 878 FDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
              +K + SL+         +++R+I+ ++  +   ++A+ I      + L   GC   Q
Sbjct: 465 LSGIKLDKSLVAPLPDHGADSVVRAILALSAELGLHVVAEGIEEIHQAQHLQDRGCTIGQ 524

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+        L   
Sbjct: 525 GYGFARPMPALDFEMWLTLH 544


>gi|91792407|ref|YP_562058.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91714409|gb|ABE54335.1| diguanylate cyclase/phosphodiesterase [Shewanella denitrificans
           OS217]
          Length = 500

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 106/418 (25%), Positives = 204/418 (48%), Gaps = 15/418 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F   L   L            ++++DI +++ +N++ G A GD +L  
Sbjct: 82  HDKLTGLANRVGFKRYLKQQL------PVKTGMLVLVDIQRFRFVNNLFGFAFGDLLLQD 135

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             +R+  L   PD ++R++G+ F +   +E +   +      ++++      + +  I+V
Sbjct: 136 FAKRVTSLNPSPDFVSRMNGDEFLLFYKNELSPESLLIIKQNLQRA----FVIEKTPISV 191

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCL 713
              +G    +      S ML+  +LA+  AK          +       R ++I   L  
Sbjct: 192 KMQLGVLELSHHNADMSLMLRRLDLALKKAKQSKNAMAYYQQDDDKVQYRELLIINSLPK 251

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   +L+LVY   + L       +EALI+W HP  G +S +EF+ + E   MI+ I+ +
Sbjct: 252 ALLEGQLHLVYQAKLDLHTGNCQQVEALIRWQHPSLGKLSPAEFIPLVEYAGMIELISFW 311

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+++     +W+ Q     + + +N+++ D+ + +L E + A +       + + +  +
Sbjct: 312 VLDKVLAQQAAWQAQG--MQVKVAVNLSTTDIDNPQLAEEISAKLKHYQVPAANLMIEMT 369

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ESV+M + ER+   L  LRKIG+ L +DDFGT  S L+YL ++P D VK + + +     
Sbjct: 370 ESVLMADLERTISCLEALRKIGVKLAIDDFGTGHSSLAYLRFLPVDEVKIDKAFLEDFDS 429

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +  +++S I +AKN+   +  + +  +  +++L   G D IQ  + A PL   + 
Sbjct: 430 DNRSKQLIKSSIELAKNLGFEVTVEGVESKTVLEQLKSFGVDTIQGDYYAKPLEPEAF 487


>gi|118589938|ref|ZP_01547342.1| Signaling protein (CHEY,EAL,GGDEF domains) [Stappia aggregata IAM
           12614]
 gi|118437435|gb|EAV44072.1| Signaling protein (CHEY,EAL,GGDEF domains) [Stappia aggregata IAM
           12614]
          Length = 747

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 190/435 (43%), Gaps = 12/435 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            LE I   A+ D +TG+     FL+            +  +  V+  DI +++ I D +G
Sbjct: 312 LLEHIRNLAYVDRVTGLSTFSGFLETFQR-----HAANGSKLLVVHCDIHRFRVIVDGIG 366

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                 VL     R+ +       +AR   + F I+L        I D    +  +   P
Sbjct: 367 DEKAGAVLKRTGHRLSQTFPDALTIARKEKDEFLILLKG-GEGNTIQDVVARVEDAFQQP 425

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           I L + +I++   +GFAS  +   ++ ++++ A +A+   + +G  +   F   +     
Sbjct: 426 ITLEDNQISLRLRLGFASTDTEAQSAEQLVRFASIALNDVRQKGVTNHAVFHPLMQEAAF 485

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ +   L  +   ++  L Y PI+R  DE +   EAL+++  P    ++++  +  AE
Sbjct: 486 ERLRLASLLTGSSNQTKFSLSYQPIMRARDESLASFEALMRFRTPNGTFLNTARMIEAAE 545

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  I  +M +    +  +         + + +N++ K +  N L + ++  ++   
Sbjct: 546 ASGLITEIGAWMFKTSFAEFSNL--TGISDDVRLNVNLSPKQVQANRLYKDIEDAVTAAG 603

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               R+    +E + + N   +  LL  LR  G  + +DDFGT  S  SYL  +P D +K
Sbjct: 604 LPLDRLVFEVTEGLFLSNDRVTLALLTWLRDKGARVVIDDFGTGYSSFSYLRKLPVDGIK 663

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S      +     A+++SII +A+ ++  + A+ +        +  + CDY+Q    
Sbjct: 664 IDRSFTMNMDQDADAHAVVKSIIAVAQALDLNVTAEGVETVAQRDIMQELQCDYLQGYLY 723

Query: 941 ASPLGFNSILKLLKE 955
           A PL  + +   +++
Sbjct: 724 AKPLAASDLTGFIQK 738


>gi|158338223|ref|YP_001519400.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
 gi|158308464|gb|ABW30081.1| diguanylate cyclase/phosphodiesterase [Acaryochloris marina
           MBIC11017]
          Length = 587

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 101/433 (23%), Positives = 209/433 (48%), Gaps = 14/433 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTG+ NR    ++ + +              M +D+D++K++ND LG  +GD+
Sbjct: 162 YQARYDGLTGLLNRVGIEEQFSEL-------PPGPLAAMFVDLDRFKEVNDRLGHTMGDE 214

Query: 591 VLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           +L  + +R+ +++     +LARL G+ F ++L        +   +  +  ++  P  L  
Sbjct: 215 LLEQVGQRVQDVIQHRSHLLARLGGDEFFLVLPGCP-LRDLLAISDTILNTLEQPFTLTS 273

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMI 707
            +  ++ASIG A+ +       +++++A+ AMY AK  G   V  +         +R+ +
Sbjct: 274 GQAYISASIGTATTSGDIANLEQLIRDADQAMYRAKEAGRRRVIYYDQSLRQDAQERLGL 333

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  AV  +++     PII      I  +E L +W      NI    F+ IA  + + 
Sbjct: 334 ESSLRQAVAENKIVAWGQPIINYQTGTIAKVELLARWKL-DQKNIPPDLFISIAANIGLT 392

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  FM+ +  + +  W+    +    I +N+ ++DL++  + + ++ L+      P++
Sbjct: 393 SDIARFMVNQAQKSLEKWKKIPALKETCITVNVEAQDLVEGLVVDYLENLVFTEQIDPAK 452

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E  ++    ++R  + RL  +G+ + +DDFG   S L  +  +P D +KF+ SL
Sbjct: 453 LILEITERGLIEAESKARFQIDRLHTLGVRVAIDDFGAGYSSLRSVMTLPVDLLKFDRSL 512

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G+T+ +    +L +++ MA + + T+I + I    DI+ + ++    +Q  + A+P+ 
Sbjct: 513 VAGATQDQRMQNVLSAMVEMASSFKITVIGEGIEKPEDIEVMKQLKVHLLQGFYCANPMP 572

Query: 946 FNSILKLLKERFP 958
              +    KE  P
Sbjct: 573 LKEVSNFAKEFLP 585


>gi|24372836|ref|NP_716878.1| cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
 gi|24346938|gb|AAN54323.1|AE015569_9 cyclic nucleotide phosphodiesterase, putative [Shewanella
           oneidensis MR-1]
          Length = 509

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 199/418 (47%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      L +++         + T+++IDI +++ +ND+LG   GD +L   
Sbjct: 83  DKLTGLINRVGLKRTLASLM------PITQGTLVLIDIYRFRYVNDLLGFVFGDILLKQF 136

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+  L   P ++ARL+G+ F +      +  ++      ++    +P N+ +  ++V 
Sbjct: 137 AERLTSLSLKPKLIARLNGDEFFLYYEQSLSQEQLLHLRGRLQ----VPFNIKDTPVSVR 192

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLA 714
             IG           S ML+  +LA+  A+  R      S      +   + I + L   
Sbjct: 193 LQIGCLQLAQHHADVSNMLRRLDLALKKARSTRIAIACYSENDDIRQLRELKIIDSLPNG 252

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++ + LY+VY P   +  E    +EALI+W+H + G IS  EF+ +AE   MI  ++ + 
Sbjct: 253 LQRNHLYMVYQPKQDVSSEGCTQVEALIRWEHEELGVISPGEFIPLAECAGMIDLVSHWA 312

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++ +  + WR       + + +N++++DL    L   + A +      P  + +  +E
Sbjct: 313 LEQVLQQQVKWRLAG--ISVCVALNLSTRDLDSETLPHELDARLKHYQLPPECLMIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M +  ++   L ++R++GI L +DDFGT  S L+YL ++P + VK +   +      
Sbjct: 371 STLMADLNKAVDTLVQIRRLGIHLAIDDFGTGHSSLAYLKHLPANEVKIDKVFLQDLKPN 430

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + +  IL + + +AK +   +  + +  +     L +MG D IQ    A P+    + 
Sbjct: 431 QPSEYILEASVNIAKKLGYEVTVEGVETQEVRDLLVKMGVDRIQGLCYAKPMRAVELE 488


>gi|54022105|ref|YP_116347.1| hypothetical protein nfa1410 [Nocardia farcinica IFM 10152]
 gi|54013613|dbj|BAD54983.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 618

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 191/428 (44%), Gaps = 23/428 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR+ F   L T ++ +         ++++D+D+++KIND LG   
Sbjct: 181 RMASEADIDVLTGLLNRRGFDRALNTAIEHATRSGQG-LALVLVDLDRFQKINDHLGHRA 239

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL  +     +LL     LAR  G+ F ++L +             +R +       
Sbjct: 240 GDAVLQRVADTWSKLLAPDQRLARYGGDAFALLLPN-TTEQAAILLTEQLRAA------- 291

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
               +T   S G  SW     + S ++  A++ +Y AK  G N           S ++ +
Sbjct: 292 ----VTTGCSAGVTSWQP-GESGSLLVSRADVGLYRAKQAGRNRTVL-----ESSRQLPL 341

Query: 708 KEDLCLAVENSELYLVYHPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
             +L  A++   L + Y PI+ L     + VG+EAL++W      ++++   + +AEE  
Sbjct: 342 AVELREAIDRGALDVHYQPIVSLTEGGGKAVGVEALLRWSSSAQPDVTTEGLIRVAEEYD 401

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  ++  +L R   D    ++      + + +N++  +L +    + +  ++S T +  
Sbjct: 402 LIADLDELVLRRACADAARLQETFAQLDLTLNVNVSGLELAEAGYADRVSDILSATGWPA 461

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            ++ L  +ES +    + +   L  LR+ G+ + +DDFGT  S LS L  +P D +K + 
Sbjct: 462 DQLVLEVTESELAAESQTAIANLHTLRERGVRIAIDDFGTGYSSLSRLATLPSDILKVDQ 521

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +        A  +L  I  ++  ++  +IA+ +  E     LT +G    Q  H +  
Sbjct: 522 SFVAAIRSDSPAPPLLGVIAALSNALDLQVIAEGVETEYQAAVLTELGFALAQGYHYSDS 581

Query: 944 LGFNSILK 951
              + ++ 
Sbjct: 582 HPVSELIN 589


>gi|126733393|ref|ZP_01749140.1| hypothetical protein RCCS2_04539 [Roseobacter sp. CCS2]
 gi|126716259|gb|EBA13123.1| hypothetical protein RCCS2_04539 [Roseobacter sp. CCS2]
          Length = 654

 Score =  347 bits (891), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 99/443 (22%), Positives = 192/443 (43%), Gaps = 12/443 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              +  D+LTG+ NR++F + + +++   A       TV +ID+D +K IND  G   GD
Sbjct: 213 ERLSRSDSLTGLMNRRAFDEVVQSMMHQHANKQG--VTVFLIDLDGFKPINDSYGHEAGD 270

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL ++  R+  L    D +AR+ G+ F ++  +  +  +    A  +   ++  I   +
Sbjct: 271 AVLRAVGTRLEALANRGDRVARVGGDEFAVLTANVTSVKQARALATEIIAKLSETIPFGQ 330

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRVMIK 708
           +++ V  S+G A          E+L  A+ AMY AK      +  +  S       +  +
Sbjct: 331 KKLDVGVSVGIARQGPDASNPPELLSGADQAMYLAKQDPEKQLNIYDKSAFPVRPTLEDR 390

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+E+ ++   Y P I +   +IVG EAL +W+HP  G +S S F+ +  EL +  
Sbjct: 391 RILVEAMESGQIIPYYQPKISIETGQIVGFEALSRWEHPTRGTLSPSHFLPMINELALQG 450

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
                  + + +D+    +    P   + IN++   +      + + A+I +       +
Sbjct: 451 TFMAHTAKHVMKDLAILVEDGLDPG-QVSINMSEVAMATLMGRKELFAIIDRYPELRPHL 509

Query: 829 KLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
               +E + +    +  R  +   R+ G+ ++LDDFGT  + L +L  + FD +K +   
Sbjct: 510 TFEITEDIFIARASDIIRRSIRLFRQAGVRISLDDFGTGYASLQHLKELEFDELKLDTGF 569

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           ++  ++ + K ++  +IA+ +        L  MGC Y+Q     + L 
Sbjct: 570 VRDLGIDPAAKILIEGLVTITKGLQVELIAEGVETAQQRDMLRDMGCKYVQGFFYGAALP 629

Query: 946 FNSILKLL-----KERFPLVKNT 963
                  L      +R P    +
Sbjct: 630 LEETHLRLSSGGYAQRRPASNQS 652


>gi|257455068|ref|ZP_05620311.1| cyclic diguanylate phosphodiesterase domain protein [Enhydrobacter
           aerosaccus SK60]
 gi|257447540|gb|EEV22540.1| cyclic diguanylate phosphodiesterase domain protein [Enhydrobacter
           aerosaccus SK60]
          Length = 614

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 109/567 (19%), Positives = 235/567 (41%), Gaps = 27/567 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY----IHINDRD 462
            +       D ++  D     +        I  L    + G    + PY    +H     
Sbjct: 53  FASVFSKIHDGIFMLDEQLRFICVNQQFLNITALPRDQVIGSPFYFYPYKTYALH---LQ 109

Query: 463 NFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                + + +  R+            +     W+ I +  +   +  ++ Y+G+  ++T+
Sbjct: 110 QAIAAIITKLDNRQSISTNLVLSYHNSPEVAVWLDISVCEV--DDNRVV-YVGLLTNLTK 166

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL---DLSATDDNLRPTVMVIDIDKYKK 578
           +   L   L     D LTG+PN  +F D+L + +     +         ++ I+IDK + 
Sbjct: 167 KDAQLSHTLHLYNYDELTGLPNYDTFYDKLKSCIDYYQAADNQRECMGVLLRINIDKLQS 226

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPD---ILARLSGNRFGIILISENNSLKIADFAI 635
            N  LGI   + ++    +R+  L          +R  G+ F  ++ S  +      +  
Sbjct: 227 FNISLGIENTNTLIQGFVKRVKSLKISGASLVTFSRFGGDSFAAMI-SVQHLDAAHHYVA 285

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           A++K   +P ++  + I +  SIG + + +    +  +L  A+ A+ HA+         +
Sbjct: 286 ALKKLFDLPFSIDNQSIYLRLSIGASVFPTHTQDAQTLLLQADTALKHARLINDEDCVWY 345

Query: 696 RVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +  +     + +      A+   ++   + P +     ++   EAL++W+HP  G + 
Sbjct: 346 DDNQQKGNFKDIHLLSAFKNALLKQQILPYFQPKLEFAQPDLPMFEALVRWEHPTLGLLY 405

Query: 754 SSEFMLIAEELCMIK-AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            ++F+  AE L      +   ++      I++WR+        I INI ++ L+ ++  E
Sbjct: 406 PNDFL--AEVLDKSSQPLFEKIVLACIEQILTWREMGYN--CLICINIDTRQLISDKFIE 461

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  I +  +    I    +E   + +  +++ +L +LR+ G S+++DDFGT  + + Y
Sbjct: 462 FIEGTIQQYSWLAQLISFEITEVCNIQDEVKAQAMLSKLRQYGFSISIDDFGTGFAAMQY 521

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   P D +K +   +T      K+  I++S+I MA ++    +A+ +    +I+ L  +
Sbjct: 522 LIKYPIDVLKIDRLFITNILQDRKKQVIVKSVIDMAHSLSMQALAEGVSNREEIEYLRSL 581

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GCD IQ      P+      + LK  +
Sbjct: 582 GCDLIQGFGFGKPMSSQDTTEWLKANY 608


>gi|309776012|ref|ZP_07671004.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916294|gb|EFP62042.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 633

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 99/457 (21%), Positives = 190/457 (41%), Gaps = 14/457 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I     I   + S   +   A +D+LT     + F+ +   ++        L   +  +
Sbjct: 173 FITNIRKILRLETSNRELKDTAGRDSLTRAYTLEYFISQAQELM---KQQTELNYALFYV 229

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL--- 628
           D   +K INDV G A GDD+L      + E  K  +++ R++ + F I+   EN +    
Sbjct: 230 DFSDFKYINDVFGYARGDDMLRQYAALLIEDKKAYELVGRINADNFIILRHYENRTELTK 289

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           + +     +R+ +    +L ++ +++   I        K++  E+L  A  A    K   
Sbjct: 290 RQSAVDARIREYMRS--HLEKQSLSICCGICCMEDVDEKLSLHELLNRANFARKMVKDGH 347

Query: 689 GNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             +   F   S R   +    I+  +  A++N +  + Y P I +   EI G EAL++W 
Sbjct: 348 ELNNYCFYDESIRQHLLEEKSIESGMEEALKNHQFLVYYQPKIDVQTGEIAGAEALVRWR 407

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             K   +   +F+ + E+   I  ++ ++ E +        D+  M  + + +N++    
Sbjct: 408 IKKGTLLMPDQFIPVFEKNRTIPLLDQYVFECVCAWQRHLLDEGRMV-LPVSVNVSRLQF 466

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            + +  E   A+  +       +++ F+ESV+  N ER   ++  L   G + ++DDFG 
Sbjct: 467 CNADFVETYAAIKKRYQLPAGLLEIEFTESVLYDNWERLTSIVDELHAAGFTCSIDDFGK 526

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L     +  D +K +          EK   ++ SII + +      +A+ I  +  
Sbjct: 527 GYSSLGMFKNLNVDVLKIDALFFQQLEQEEKDQLLVNSIIQLVRQFGVKTVAEGIETQKQ 586

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           +  L  M CDYIQ      PL      +LL +  P  
Sbjct: 587 VDMLKEMHCDYIQGYVYYKPLPQKGYERLLLQSSPQT 623


>gi|294664119|ref|ZP_06729511.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606107|gb|EFF49366.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 618

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 198/476 (41%), Gaps = 20/476 (4%)

Query: 488 ADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
            D      +  I   P    +   + ++    D+   +          ++D  TG+PNR 
Sbjct: 129 RDGHSIGTLCVIGTSPRPGLDQAAITHLEGLRDLAVLRVENLRSTT--YRDGPTGLPNRS 186

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            F + L T L  S  D     T + ID+   D ++ +   LG    D  +    RR+   
Sbjct: 187 RFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAY 244

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L    +L RL    FG +  +E    ++A     + K+   P+       T  ASIG  S
Sbjct: 245 LPGGTLLYRLDPTTFGFLAQAEG--QRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVS 302

Query: 663 WT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
                 +  T   +  + ++A            E     + R+   ++          S+
Sbjct: 303 LQSSYGAADTIRSLTTSVDIARERCLPWS--MYERKHDVAQRNTFRLLAALPAALDSASQ 360

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L + P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++   
Sbjct: 361 LRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDNGI 420

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES ++ 
Sbjct: 421 AQAARWQQQGLD--FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIR 478

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           +P+     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +     ++    
Sbjct: 479 HPDHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSQTDRT 538

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L
Sbjct: 539 LVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWL 594


>gi|331005858|ref|ZP_08329210.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
 gi|330420302|gb|EGG94616.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [gamma proteobacterium IMCC1989]
          Length = 758

 Score =  347 bits (890), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 188/442 (42%), Gaps = 15/442 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  + I   A  D  TG+ NR +F++++   L            ++   I+  ++I+
Sbjct: 317 EISQREKEIKYRATHDITTGLINRTAFIEKVELHLSSKKQ-----FQIICFGINNIRQIS 371

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++ G ++G   L  ++  + +       +AR S  RF  ++  E  +  I +  I ++  
Sbjct: 372 NMFGPSIGQLCLKKISTYLSKRFI---CVARSSDERFMAMIDYEIGAEDIHNIHILLKAR 428

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSS 699
           +   +      I     IG   +  +      +++  ++ M           +      +
Sbjct: 429 LQESLAKDSVHINAEIFIGTIPYGHNSKNVDSLIRKLDITMDAGCTTDNEVCLYQSGQEA 488

Query: 700 FRSDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              DR+ I E+L LA+ N    L + Y P + L    +  LEALI+W H + G I    F
Sbjct: 489 AYLDRLRIVEELRLAINNKGSNLAMYYQPKLDLKTGRVEKLEALIRWQHEERGFIPPDVF 548

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+  +I  +  +++E +   +  W ++       + IN++++D+   E+   +  L
Sbjct: 549 IPLAEQSGLINLLTEWIIETVIIQVAQWIEEGIR--FEVAINLSAQDIARPEMLTIINKL 606

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +         +    +ES +M  PE +  LL   R+    L +DDFGT  S L+ L  +P
Sbjct: 607 LLNYSVPAELLSFEITESEIMSKPEEAIRLLSLFRRQSFRLAIDDFGTGYSSLAQLKNMP 666

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +           I++S I +A +    ++A+ +     +  L  + CD+ 
Sbjct: 667 VTELKIDREFVMHLANNPDDKIIVQSTIDLASSFNLGVVAEGVEDIETLNLLADLKCDWA 726

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q   +A P+  + I   LKE +
Sbjct: 727 QGYFIARPMAGHDISNWLKEFY 748


>gi|146280765|ref|YP_001170918.1| c-di-GMP phosphodiesterase A-related protein [Pseudomonas stutzeri
           A1501]
 gi|145568970|gb|ABP78076.1| c-di-GMP phosphodiesterase A-related protein [Pseudomonas stutzeri
           A1501]
          Length = 788

 Score =  347 bits (890), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 204/467 (43%), Gaps = 16/467 (3%)

Query: 503 SNSNGDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  G+I R       + ++   +L+ I   ++ D+LT I NR  F   L  ++      
Sbjct: 306 PSDGGEIGRLTVNMKTLHDRSTAALQRIQEISWTDSLTQISNRAHF-GMLANVMYEQCLQ 364

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP--------DILARLS 613
           ++ R +++ ID+D +K++ND  G   GD +L    +R   LL+             ARLS
Sbjct: 365 EDKRLSLLFIDLDNFKQVNDRHGHDAGDALLRLFAQRAQTLLERHRQQHPHTYSAFARLS 424

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F I+L+S+     +     A+         L ER   V+ SIG A +     + +++
Sbjct: 425 GDEFAILLLSDAEPG-LDALCDALLGLCRGGFRLEERTYPVSLSIGTACYPDDADSITQL 483

Query: 674 LKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           L  A+ AMY AK  G     +F            +I++ L     + +L LVY P +   
Sbjct: 484 LTRADTAMYQAKAEGKCMAVAFSNELEQRNERIRLIEDQLRALDGDDQLRLVYMPALN-R 542

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           D  +V  E L++W  P  G +S +EF+ IAE   +   I+ ++++    +          
Sbjct: 543 DGAVVSCEVLLRWHSPVLGTVSPAEFIPIAERAGLFPKIDSWVIDHALAEYPQLVRLFGE 602

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I + IN++S  L D+ +C  +    +    +P RI++  +E+      + +  ++  +
Sbjct: 603 QVI-LAINVSSAQLADDRICRYLAERAAHHGVAPGRIEIELTETYAAELNKDTMAVVQAI 661

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIE 910
           R+ G  + +DDFG   + +  L   P DT+K + +++T  T       L +++       
Sbjct: 662 RRAGFRVAIDDFGVGYTSIQQLLEYPADTIKLDMAIITRLTRPDMQHSLSALVAFCHAQG 721

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             + A+ +        L + GCD  Q   ++ P    ++   +  R 
Sbjct: 722 KRVNAEGVDDMEKQSALLQAGCDLFQGYLISPPRALPALEDWMAVRN 768


>gi|156336448|ref|XP_001619728.1| hypothetical protein NEMVEDRAFT_v1g223892 [Nematostella vectensis]
 gi|156203482|gb|EDO27628.1| predicted protein [Nematostella vectensis]
          Length = 613

 Score =  346 bits (889), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 191/414 (46%), Gaps = 6/414 (1%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               L  +L            V++I I   + I    G    + VL  LT RI + L   
Sbjct: 1   MEQELPQLLQGLK--PERLLAVIMIKIPLLRDIRTQWGTDYVNSVLADLTHRIKDSLYSY 58

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D+LAR   +   +I  +  +  ++     +++  I  P  +  +E++  ++ G +     
Sbjct: 59  DLLARFYDDTLVLIRPNAADKREVTGLVNSIQTIIMHPSKIEGQELSFQSTAGISLAPQD 118

Query: 667 KITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
              +  +L NAE A+  A+             +    +R+ + +D+  A+E+ + +LV+ 
Sbjct: 119 ATQTLTILSNAEEALADARRIEMDYLYFDQLQTFAVDERLQLWKDIQQALEDHQFFLVFQ 178

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P+  L   +++  E L++W HPK G IS + F+  AE+  ++  ++ +++      +  W
Sbjct: 179 PLFDLRSNKLLSAEVLLRWQHPKRGFISPAVFVAFAEQSGLVSRLDNWVIRATLSQLKKW 238

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           +D     P  + IN++    +  +L   ++   +      S ++L  +E V++ + E+ +
Sbjct: 239 QDAGLELP-KLAINLSGLTFVRTDLAALLKDAAAAYDVPLSHLELELTEGVLIDSMEQVQ 297

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
             +  ++ +G+S+++DDFGT  S LS +  +P D VK + S +     +     I+  I 
Sbjct: 298 SKIEAVKALGVSISIDDFGTGYSSLSRIRNLPIDKVKIDRSFIEELENSHGDRKIIEGIT 357

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            MA+ +   ++A+ +     +  L  M CD +Q   ++ P+  + ++ LL+++ 
Sbjct: 358 HMAQGLGFKVVAEGVETLEQLNLLRTMNCDIVQGFLLSKPIPPDDLMALLEQQN 411


>gi|330980979|gb|EGH79082.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 667

 Score =  346 bits (889), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 113/420 (26%), Positives = 186/420 (44%), Gaps = 12/420 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 313

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 314 GQH--DSAFYAAMWHQLTAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVA 369

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL   L  S    +L   V+ +D+D
Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L    + G EALI+W+HP +G +
Sbjct: 549 YTCDLSEQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGEV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L    L E
Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQTNLLE 667



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +          G + 
Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ +++R      +      +        R+R  +       +  +P
Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIERMKKHGFVK----DMRVRIRHNNGDIRLCELSSQP 236

Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             ++  +      + I  DITE ++  E +   A 
Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267



 Score = 39.9 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +       + +       D +    +     +          GL    + G     L  
Sbjct: 10  REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGLPLDEVIGKTPTELNL 69

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    ++  +P    +  I   + 
Sbjct: 70  WAVPGIGPKVLLQL-----QTDDIHNLEIPFRRKNGETFSGLMSAQPF--EHSPIPAVLV 122

Query: 515 IANDITEQK------KSLEGILCNAFQ 535
           I  DIT+ K      +  E     AF 
Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149


>gi|83646439|ref|YP_434874.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83634482|gb|ABC30449.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 568

 Score =  346 bits (889), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 204/436 (46%), Gaps = 17/436 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +      D++TG+P +   ++ + T++     + N+   V  +D+D+   +  +L  
Sbjct: 134 HQNLRLLEEYDSVTGLPKKDILMELIDTLIKQ-KNNANVCVCVCEVDMDQ--TLIGLLSS 190

Query: 586 AVGD----DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              D     V  ++  R+  +     +L  L   +FG++L  E    + A     +++ +
Sbjct: 191 HDRDLSERQVSRTVVERMSSIFPPGMLLGCLGSGKFGVVL--EAGEEEGATHLRLLQQKL 248

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           ++PI +  +E  +  SIG+A     ++    +  +AE+A   A+  GGN V+ F      
Sbjct: 249 SLPILVEGQEFFLKFSIGYAPPPHPRLEWIVLFNHAEIAALEARKEGGNLVKRFAPEMDA 308

Query: 702 SDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +         L  AV   +  + Y P + ++ E +VG EAL++W  P+ G+IS + F+ 
Sbjct: 309 VNHERWWMSRALFQAVREQQFEVYYQPQVDILQESLVGFEALLRWKTPEKGHISPARFIP 368

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE   I  I+L+M+E++ + I  W+       + + INI+   L  +E  +    L +
Sbjct: 369 LAEENGQIYDISLWMMEQVCQQIALWKRAGKR--LRMAINISPVQLHRDEFTQDFVDLFT 426

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP+  +L  +E+ +M    +    L  L   G  + +DDFGT  S L YL   PF+
Sbjct: 427 RYRLSPNDFELELTETSLMD--PKGGGQLRELWSQGFDIAIDDFGTGYSNLEYLRKYPFN 484

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S ++    +    AI+++I+ +A+++   +IA+ I     +  L  +GC   Q 
Sbjct: 485 RLKIDRSFISNICDSGDDFAIVKAILAIAEHMGFKVIAEGIETVDQLARLRSLGCHEAQG 544

Query: 938 SHVASPLGFNSILKLL 953
              + P    +   +L
Sbjct: 545 YLFSKPAPAANATAML 560


>gi|254450244|ref|ZP_05063681.1| diguanylate cyclase/phosphodiesterase [Octadecabacter antarcticus
           238]
 gi|198264650|gb|EDY88920.1| diguanylate cyclase/phosphodiesterase [Octadecabacter antarcticus
           238]
          Length = 378

 Score =  346 bits (889), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 165/374 (44%), Gaps = 5/374 (1%)

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  +  R   +L+  D++ARL G+ F I++    +   +      +R++I+ PI   + 
Sbjct: 1   MLKQIAIRARTVLRPEDMVARLGGDEFVIVIEGNRSKATLESQVEKLRRAISNPILHDKT 60

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708
            I  T S+G A +T      S++++ A++A+Y +K  G N    F          R  I+
Sbjct: 61  RIGATISVGIAGYTDDSDCFSDVMRQADIALYASKQGGRNCTTFFNTQMGNAAIARDQIE 120

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  AV   E  L Y P + +   EIVG E L++W HP+ G +    F+ I EE  +I 
Sbjct: 121 VALGQAVLADEFILHYQPRLDIQSGEIVGAEGLVRWVHPERGMVMPDIFIPICEETGLID 180

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +LE      I W          + +N++ +   D      +Q   ++  +   RI
Sbjct: 181 ELGRIVLEIGCSQAIEWHQAGFDLD--VSLNVSPRQFSDPGFVTTLQDFAARPGFPHGRI 238

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E+V++G        L  +  IG ++ +D+FGT  S LSY+   P   +K + S +
Sbjct: 239 ELEITETVLIGEHNEIAEKLRAITAIGYNIAIDNFGTGYSNLSYISRFPLTCLKIDRSFI 298

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I++ I+ +   I   ++++ +  +  +  LT   C   Q   +  PL    
Sbjct: 299 DQL-PASGPIVQLILTLGPQIGARVVSEGVETQEQLDWLTDNNCKEAQGYLITRPLAVRD 357

Query: 949 ILKLLKERFPLVKN 962
             + ++   P  + 
Sbjct: 358 FERFVQAFAPSGQR 371


>gi|116248929|ref|YP_764770.1| GGDEF domain/EAL domain/GAF domain-containing protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115253579|emb|CAK11971.1| putative GGDEF-EAL-GAF domain putative c-di-GMP phosphodiesterase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 604

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 107/441 (24%), Positives = 199/441 (45%), Gaps = 13/441 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++ +       + D LTG+ NR  F   L   L  S         ++++DID  K +N
Sbjct: 158 DREERVMERQRLTYSDALTGLSNRARFNQLLAEDLPRSGRAWG----ILLVDIDNLKLVN 213

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD ++  +  R+       +   RL G+ F +I+  + +   +   A  + K+
Sbjct: 214 DTFGHAAGDALIQVVADRVATTAGSQNTF-RLGGDEFAVIVSDDKDLD-LNARATDILKA 271

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVS 698
           ++ P       +   A+IG A    ++    +  +NA+LA+YHAK   RG        + 
Sbjct: 272 LSSPSTCDGHVVFPAATIGGALA-ETETNPDQTRQNADLALYHAKEHNRGRYVQHYPGLG 330

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           +  + R     D+ +A+E+  +   Y PI+RL   EIVG EAL +   P    I+++ F 
Sbjct: 331 TALTRRFRAVRDVGVALEDDRIDAHYQPILRLDTREIVGFEALCRMTTPSGEIIAAAHFH 390

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              ++  +   +   ML R+ARDI SW  +       + IN+++ D     L + +  + 
Sbjct: 391 EATKDAHIAAELTQRMLLRVARDIRSWLARGLPLQ-HVGINLSAADFRGGNLQDRLCRIF 449

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +       I L  +ESV +G  +      +  LR  G+ + LDDFGT  + L++L  +P
Sbjct: 450 GEAEVPLKHIILEVTESVYLGQRDYVVADEIKALRSKGLRVALDDFGTGYASLTHLLTVP 509

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +           I+  +I +A  +   ++A+ I  E+   +L+++GC   
Sbjct: 510 VDIIKIDKSFIDRMVPGDAGTFIVEGLIGIADKLGIRVVAEGIETELQAVQLSQLGCKLG 569

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    +  +       +L++ 
Sbjct: 570 QGYLFSKAVDRTVAAAILEQH 590


>gi|270264223|ref|ZP_06192490.1| putative phosphodiesterase [Serratia odorifera 4Rx13]
 gi|270041872|gb|EFA14969.1| putative phosphodiesterase [Serratia odorifera 4Rx13]
          Length = 668

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 95/433 (21%), Positives = 200/433 (46%), Gaps = 10/433 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+   +   + +  +T +PN+  F   L   +  S   D  R  ++VI I+   + + VL
Sbjct: 234 KAYAEMSRLSTRHPVTELPNQALFTALLEQHIASSLRPD--RFNLLVIGIETLHEASGVL 291

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             A+ + +L++L +++ E +    +LA+LS   F I+             A  +   I  
Sbjct: 292 NPAMREALLLTLAKKLRECIDENGVLAQLSNTEFAILAKGVERPFHAMQLARRIMAQINA 351

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P++L E  +  +ASIG A + +   ++ ++L++A  AM  A   G N +  F  S     
Sbjct: 352 PLSLQEMPLRPSASIGIAHYLNVGESAEQLLRSATSAMMSAHREGKNQILFFEPSLTERT 411

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + ++  A++     L   P + +    ++G EAL++W          ++ + +A
Sbjct: 412 QKRLTQESEILHAIDQRRFTLFLQPQMDMQSNAVIGAEALLRWQQYDGSFTLPADVIPLA 471

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EEL +I  +  ++LE   R +  W+ +     + + +NI++  +   +    +++++++ 
Sbjct: 472 EELGVIVPLGNWVLEESCRILADWQTRGIT--LPLAVNISATQMQHEDFIPHLKSMLAQH 529

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
              P ++ L  +E+V + + +R+  LL  L  +G+S+ LDDFG   S L+YL     +P 
Sbjct: 530 HIDPRKLLLEITETVRIDDLDRALSLLRELHDLGLSIALDDFGMGYSSLNYLNRLKCLPI 589

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K + S + G      A++R +  +++ +   ++A+ +        L + G    Q  
Sbjct: 590 DLIKIDKSFIQGLPADD-AMVRIVSSISEVLHLPVMAEGVENAGQRDWLLQHGIHSGQGF 648

Query: 939 HVASPLGFNSILK 951
             A PL       
Sbjct: 649 LFARPLPRAEFEA 661


>gi|237746498|ref|ZP_04576978.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377849|gb|EEO27940.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 970

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 190/437 (43%), Gaps = 12/437 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ + I      D LTG+P    F +  T  L+      N+R  V+ I+I+ +K IND
Sbjct: 528 RNRAHKSITDLIVYDQLTGLPRLMRFAETATKRLNR--ESGNIRYGVVYININNFKYIND 585

Query: 582 VLGIAVGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +   + GD++L ++  R+   ++    + + R S +RF + L S  +   +    +++  
Sbjct: 586 IHDFSKGDELLRAVANRLTAFIQTEQGETVCRESADRFILFLAS-ASEQALKKRMVSLNA 644

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +++    +L     VT S G      ++ T    +  A  A         N    F  + 
Sbjct: 645 ALSDFGQILGN-YPVTFSCGVYLL-QNRDTIDAAINYAHYAQISKNKASYNTFTWFDDAI 702

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +   I++ +  A+ + +    + P + +   E+VG EAL +W  P    +    F
Sbjct: 703 VERIRENRKIEQLMDGALASGQFVPYFQPKVNMQTGEVVGAEALTRWLVPGSEPVPPDRF 762

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+   I  ++L++ E+    + S  ++       +  N +    +D+ L   +  +
Sbjct: 763 IPLFEKNNFIIRLDLYIFEKTCHILKSLMEEGKNV-FPVSCNFSHNHFIDHSLPARLMDI 821

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +     S + +  +E+ V+ + +        LR+ G  ++LDDFG   S ++ L  I 
Sbjct: 822 ARRYKVPFSLLDIEITETSVINDIDAVIWATRELRQAGFRISLDDFGVGYSSVNLLCQIQ 881

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +  ++    +  ++  I  +A N+   I+ + +   + ++ L R GC   
Sbjct: 882 VDTLKLDKSFLDQASSLPCKRTLIEGIADIAGNLGIDILCEGVETALQVEFLKRTGCTLA 941

Query: 936 QDSHVASPLGFNSILKL 952
           Q  + + P+ F+   +L
Sbjct: 942 QGYYYSKPVPFDEFAQL 958


>gi|167757129|ref|ZP_02429256.1| hypothetical protein CLORAM_02678 [Clostridium ramosum DSM 1402]
 gi|167703304|gb|EDS17883.1| hypothetical protein CLORAM_02678 [Clostridium ramosum DSM 1402]
          Length = 612

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 175/429 (40%), Gaps = 13/429 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++DNLTG+ NR  F+     I+  +      +   + IDI+ +K INDV G   GD +L
Sbjct: 189 AYRDNLTGVNNRLKFVLEARNIIKKTK----GQFAFLYIDIEHFKYINDVFGYQFGDKIL 244

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                 +   +   +  AR + + F IIL    +   +    I + + +   +   +   
Sbjct: 245 KKYAAVLANSIDKNETFARNNADSF-IILRHYESKEMLKQKQIEIDQILIDYVKKAKNGY 303

Query: 653 TVTASIGFASWTS--SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIK 708
            +    G   +     K+T  E +  A  A    K     H   +  +         MI+
Sbjct: 304 QIRLCCGICCYEDVIEKLTIDEYIDRAIFAQDTIKRTSEEHYAFYTEAIRNKLHMEKMIE 363

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A++N E  +   P + +   +I   EAL++W       I    F+ I E+   IK
Sbjct: 364 NRMQTALDNQEFLVYLQPKVNIKTGKIACAEALVRWKSEDR-LIYPDLFIPIFEKNMHIK 422

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I+ ++   +   I    D+   P   + +N++     +++       +  +       I
Sbjct: 423 EIDKYVYREVCSWIRKRIDEEL-PCYPVSVNVSKVQFYNSKFVNEYYQIKQEFGIPDRMI 481

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++ F+ESV     +    ++  LR  G   ++DDFG   S L+ L  +P D +K + +  
Sbjct: 482 EIEFTESVAFERTDLLIKIINDLRNYGFICSMDDFGKAYSSLNLLKDLPIDVLKLDSAFF 541

Query: 889 TGST-EKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             S    +   I++ II M  N+    +A+ +     ++ L  +GCD +Q      P+  
Sbjct: 542 EDSDNPDKVKLIIKDIIKMVNNLGIKTVAEGVEQVSQVEFLREVGCDLVQGYVYYKPMPI 601

Query: 947 NSILKLLKE 955
           N   KL+ +
Sbjct: 602 NEYEKLIDK 610


>gi|163749398|ref|ZP_02156646.1| cyclic nucleotide phosphodiesterase, putative [Shewanella benthica
           KT99]
 gi|161330807|gb|EDQ01734.1| cyclic nucleotide phosphodiesterase, putative [Shewanella benthica
           KT99]
          Length = 501

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 107/419 (25%), Positives = 207/419 (49%), Gaps = 15/419 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR     RL      S      + ++++IDI +++ +ND+ G +VGD++L  +
Sbjct: 89  DKLTGLPNRLGVKSRL------SGLSTIQQGSLVLIDIYRFRFVNDLFGFSVGDELLRQV 142

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           ++R+ +L      +AR++ + F +       + +     +A+++ +  P  +    I+V 
Sbjct: 143 SKRLIDLTSQAAYVARMNEDEFLLYF----EAQQSESILLALQEQLQAPYEIEGSTISVL 198

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLA 714
             +G    +      S +L+  +LA+  AK R              +   + I  DL  A
Sbjct: 199 IQMGLVDLSLHHTHVSALLRRLDLALIKAKLRKPFFACYVKGDDLSQQRELSIIHDLPKA 258

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +LY+VY P + ++      +EAL++W H + G+IS +EF+ +AE   MI+ ++ + 
Sbjct: 259 LQQGQLYMVYQPKLDVISATYTQVEALMRWKHSELGDISPAEFIPLAEYAGMIELLSQWA 318

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE++      W+       + + +N++++D++   LC+ +Q  + +   S   + +  +E
Sbjct: 319 LEQVLSQQAKWQAM--DVRLQVAVNLSTQDIISTTLCDDIQTKLGRYGVSADSLSIEITE 376

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M N E +   + +L++IG+S+ +DDFGT  S L+YL   P D VK + + +      
Sbjct: 377 SQLMDNMELAIATIEKLKEIGVSVAIDDFGTGHSSLAYLKNFPVDEVKIDKAFLDDLLTD 436

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + A  I+RS I +AK +      + +  +     L  MG D IQ    A P+    I  
Sbjct: 437 KRAAHIMRSSIDLAKGLGFITTVEGVETQAVNLALIEMGVDKIQGDLFAKPMTAKEIEA 495


>gi|294626049|ref|ZP_06704658.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599651|gb|EFF43779.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 618

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 199/480 (41%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  I   P    +   +  +    D+   +          ++D  TG+P
Sbjct: 126 LKLRDGHRIGTLCVIGTSPRPGLDQAAITQLEGLRDLAVLRVENLRSTT--YRDGPTGLP 183

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + L T L  S  D     T + ID+   D ++ +   LG    D  +    RR+
Sbjct: 184 NRSRFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRL 241

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +L RL    FG +  +E    ++A     + K+   P+       T  ASIG
Sbjct: 242 AAYLPGGTLLYRLDPTTFGFLAQAEG--QRLAALCTKVSKAFTEPLEHQGIPHTAVASIG 299

Query: 660 FASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             S      +  T   +    ++A            E     + R+   ++         
Sbjct: 300 AVSLQSSYGAADTIRSLTTAVDIARERCLPWS--MYERKHDVAQRNTFRLLAALPAALDS 357

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            S+L L + P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 358 ASQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVID 417

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES 
Sbjct: 418 NGIAQAARWQQQGLD--FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESA 475

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
           ++ +P+     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +     ++ 
Sbjct: 476 MIRHPDHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSQT 535

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 536 DRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMTAAALETWLE 595


>gi|332304554|ref|YP_004432405.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171883|gb|AEE21137.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 775

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 103/451 (22%), Positives = 200/451 (44%), Gaps = 19/451 (4%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I + +  +  ++  E I   A  D LTG+ NR +    L    +L+         V+ I
Sbjct: 332 AIALESMQSNIRQREEKISYQAQHDILTGLNNRYNMESLLNAKFELNK-----PFQVLGI 386

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           ++  ++ INDV G   GD  L  L +R+         LA       G  L+   +     
Sbjct: 387 NVFGFRSINDVFGYHNGDTCLQVLAKRLLAHGGLGARLA-------GGELLWVPDEHVTH 439

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGN 690
           +  +  R  +  PI   +  I    SIG  +  +    + E+ +   + +   +      
Sbjct: 440 EQLLEFRNELEQPIETGDASIITKVSIGMLNCPTDASNAEELFRRMNIVLDETQLSEQLL 499

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVE--NSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                        R+ I  +L  A++    EL L Y P + L+  ++  +EALI+W++  
Sbjct: 500 LNYKPEFEQRYLRRLSIIAELKTALDDQQDELSLFYQPKLDLVSGKVTKVEALIRWNNAI 559

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S  +F+ +AE+   I  I  +++ +  +D ++ ++      + I IN+++KD++DN
Sbjct: 560 LGFVSPDDFISVAEQAGFIGKITDWVINQAIKDAVTLKNAG--MDVSIAINLSAKDVMDN 617

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L   + +L+S +      +    +ES ++  PE++   L   R+ G  L +DDFGT  S
Sbjct: 618 ALLPHITSLMSASELDSKALSFEMTESDLVREPEKAIQQLRAFRERGFELAIDDFGTGYS 677

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            +SYL  +P  T+K + S +      +    I+R++I +A +    ++A+ I  +  ++ 
Sbjct: 678 SMSYLKSLPVTTLKVDKSFVLKLDSQQGDQKIVRTVIDLAHSFGLNVVAEGIESQATLQL 737

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           L   GC+  Q  ++  PL F   ++   +  
Sbjct: 738 LQNWGCELAQGYYMCKPLPFADFIQWHNKHQ 768


>gi|289208832|ref|YP_003460898.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288944463|gb|ADC72162.1| diguanylate cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 866

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 96/439 (21%), Positives = 182/439 (41%), Gaps = 20/439 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I    K  + +   A +D LT + N++ F +     +  +         V
Sbjct: 421 LLNLVGSVKAI---YKYTQDLEHYATRDPLTNLYNQRVFWELFNYEIKRA-EGHGYPFAV 476

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           MV+D+D +K IND  G A GD  L + +  I   ++  DILAR  G+ F +IL  E +  
Sbjct: 477 MVVDLDNFKTINDRYGHAFGDRFLQAYSETIQGAIRNEDILARYGGDEFALILP-ETDQQ 535

Query: 629 KIADFAIAMRKS---IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                A  M ++   +++P       +  T  IG A++      + ++   A+  MY AK
Sbjct: 536 SAWQLAAHMAEATDGLSLP-APDGSRVRATTCIGIAAYPRHGKDTRDLFLVADNMMYKAK 594

Query: 686 HRGGNHVESFRVSSFRSDRVMIKE---DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
             G N V         +      E    +  A+E+  +   + PI+     E    E L+
Sbjct: 595 REGKNAVCVPSDEEVAAVFREAGETGIMIMEALEDRRIVPYFQPIMDTTTGEAHIHELLM 654

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        I + +F+ +AE + ++  ++  ++E+   ++             + IN++ 
Sbjct: 655 RIRV-GGELIPAGQFVEVAETMGVMHQLDYVLIEQAFIEVSRSGYSGL-----LFINLSP 708

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + L+  E    ++ L       P+++    +E   + N       +  L++ G    +DD
Sbjct: 709 RALIIGEFIGKVRQLAHDHGIEPAKVVFEITERDTVKNMAVLEQFVLDLKQQGFQFAVDD 768

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG+  S   YL   P D VK  G  +       +  A +RSI  +A+++    IA+ +  
Sbjct: 769 FGSGFSSFHYLKRFPIDFVKIEGDFVRNMVHDARDQAFVRSIAALARDLNVRTIAEFVED 828

Query: 921 EIDIKELTRMGCDYIQDSH 939
              ++ +  +G  Y Q  H
Sbjct: 829 AEILEAVRSIGIHYAQGFH 847


>gi|310826749|ref|YP_003959106.1| hypothetical protein ELI_1155 [Eubacterium limosum KIST612]
 gi|308738483|gb|ADO36143.1| hypothetical protein ELI_1155 [Eubacterium limosum KIST612]
          Length = 767

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 95/438 (21%), Positives = 193/438 (44%), Gaps = 12/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           KS   +L  A+ D LTG  N   F      +L     + N    +   DI K+K +ND+ 
Sbjct: 323 KSRNELLRAAYVDPLTGQRNNTRFRIDGEEVL---KENKNAPYGIWYCDIKKFKFLNDLY 379

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  L+  + +  +  D+  R+S + F  I  S +  +++ D+   +   I+ 
Sbjct: 380 GYENGDKILKCLSDILLDHSRKDDLFCRVSADNFAGI-RSYHERVELTDWFNELVWEISE 438

Query: 644 PINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +    R + +   +G           T ++M+  A +A    K + G+ +  +      
Sbjct: 439 SVMDKTRHLPIELCMGIYCTDDQSEQLTLNDMIDRANMAQKSIKDQVGSQMTFYTEEIRN 498

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEFM 758
                  ++     A+E  E  +   P + +    I+ G EAL++W+  + G IS  EF+
Sbjct: 499 QTIKETEMEALGKEALEKEEFVIYMQPKVNIQKNNIIAGAEALVRWNSRQKGMISPGEFI 558

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+  ++  ++ +M E+    + ++ D    P + + +N++   L   +  E    + 
Sbjct: 559 PLFEKTGLVVDLDRYMFEKACHWLRNYLDA-GRPALNVAVNVSRLGLFQEDFVEYYSGIK 617

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       ++L F+ESV++ +    + ++  L+K G   +LDDFG+  S L+ L  +  
Sbjct: 618 QKYRIPDFLLELEFTESVMLDDSSTFKNVVEILKKNGFRCSLDDFGSGYSSLNVLKNLSI 677

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +       T+  +   ++ + + MAK +    IA+ +     ++ L  +GCD +Q
Sbjct: 678 DILKLDILFFKEGTDLRRERVVIANTVAMAKELNIKTIAEGVEDTEQVEFLKSIGCDVVQ 737

Query: 937 DSHVASPLGFNSILKLLK 954
               + P+      ++LK
Sbjct: 738 GYVFSRPMPLMEFDEMLK 755


>gi|222873029|gb|EEF10160.1| predicted protein [Populus trichocarpa]
          Length = 364

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 159/345 (46%), Gaps = 9/345 (2%)

Query: 619 IILISENNSLKIADFAIAM----RKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           ++    +   + A  A  +       +     L         SIG   +     +++E+L
Sbjct: 1   MLCELSHEPAEAATLAQRIGEKILARLNQSYVLGAHLHRSACSIGATLFGRQPQSAAELL 60

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
           K A++AMY  K R G+ +  F             ++ DL  A+  S+  L Y P   L  
Sbjct: 61  KQADIAMYQIKARNGSGLCFFDPQMQVEIHQRVRMEGDLRQALAQSQFELHYQPQFTLA- 119

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            E++G EAL++W HP+ G +    F+ +AEE  +I  + ++++      +  W+  A + 
Sbjct: 120 GEVIGAEALLRWRHPERGLVPPGMFIAVAEESEIIVPLGMWVIRTACEQLAIWQKDARLR 179

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++++     +    +   +     +P  +KL  +ES+V+ N + S   + +LR
Sbjct: 180 HLQVAVNVSARQFRHQDFASQVIEQVRNAGIAPHLLKLELTESLVIENVQESIDKMKQLR 239

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIE 910
             G+  ++DDFGT  S L+YL  +P + +K + S +   G       I+++II MA+N+ 
Sbjct: 240 SHGVCFSMDDFGTGHSSLTYLTQLPLNQLKIDQSFVRHLGLRHTDDVIVQTIIGMARNLN 299

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +IA+ +        L   GC+Y Q    + P+   +  +LL +
Sbjct: 300 LDVIAEGVETLEQRALLAHYGCEYFQGYLFSPPVPIRAFEQLLAK 344


>gi|289207718|ref|YP_003459784.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288943349|gb|ADC71048.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 597

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 100/445 (22%), Positives = 193/445 (43%), Gaps = 18/445 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++ + +   A  D  TG+PNR S L  +   ++           ++++ +  ++ +  
Sbjct: 157 LQRTEQDLEHLAHHDPATGLPNRHSLLRFIDEAIET-----GSALDLVMVHVRGHEAVER 211

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG---IILISENNSLKIADFAIAMR 638
           + G A  D +L  + +R+  L        R+    +G   ++L   +             
Sbjct: 212 LEGYAAADLMLREIGQRLR-LALEDQTPGRVQCGIWGGSTLLLAVASRESIATSTLQDCM 270

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
            +    + L   EI  +AS G          + E+++   L +   + RG         +
Sbjct: 271 DASLAHLRLGRYEIAPSASAGHVRAPDHGRNAEELIRRVSLTLAKGERRGSEWLSFDPVL 330

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  ++  L +A E  +L+L+Y P I L    +VG EAL++W+HP+ G IS  EF
Sbjct: 331 EQDARRRHQLEYGLTVAREQDQLHLLYQPKIELASGCLVGFEALMRWEHPRLGLISPGEF 390

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-----NELCE 812
           + +AE    I  +  + L         WR+ +   P  I +N++++           L +
Sbjct: 391 IPLAENTGRIAELGEWALHEALAAARRWREASGHCP-PIAVNVSTQQFAALTRSGRSLVD 449

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q+ +  +  + + +++  +E+ VM +   +   L  LR +G+S+ +DDFGT  S L+Y
Sbjct: 450 AVQSALKASGLNGNALEIEITETAVMHDVAATVEELRALRALGVSIAIDDFGTGYSSLAY 509

Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P  T+K + SL+ G  +      + R+I+ +++    T +A+ I  E D + L  +
Sbjct: 510 LRRLPATTIKIDRSLIDGVSANPSMDTLARAILSVSRGFGLTTVAEGIETEADARHLAAL 569

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GC   Q      PL       LL  
Sbjct: 570 GCPIGQGYLYHRPLPETDASGLLAR 594


>gi|190574272|ref|YP_001972117.1| putative GGDEF EAL response regulator signalling protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012194|emb|CAQ45817.1| putative GGDEF EAL response regulator signalling protein
           [Stenotrophomonas maltophilia K279a]
          Length = 590

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/412 (27%), Positives = 185/412 (44%), Gaps = 6/412 (1%)

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
            L  ++  +A        +M +DID +  +N+ +   VGD  LV + +R+   L+    L
Sbjct: 24  ELQAMVAEAA-SGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKL 82

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
            R   + F I +    +     DFA  +R+ + +P+++L   + +T  +G +        
Sbjct: 83  WRHGSDEFLIAVPRNADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASN 142

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
           +S +L +AE A+Y A   GGN V    V +  S      I   +  A+ N EL L Y P+
Sbjct: 143 ASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPL 202

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +   D  +VG+EAL++W  P  G +    FM  AE L +I  I  ++LE   +    WRD
Sbjct: 203 VSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRD 262

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           Q       I +N+++  LL       +  LI         + L  +ES +  N       
Sbjct: 263 QGFD-DFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHET 321

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905
           L  LR  GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M
Sbjct: 322 LANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAM 381

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  T+IA  +  +  +  L R  CD  Q      P+  ++    L+ R+
Sbjct: 382 GHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRY 433


>gi|302879492|ref|YP_003848056.1| diguanylate cyclase/phosphodiesterase [Gallionella
           capsiferriformans ES-2]
 gi|302582281|gb|ADL56292.1| diguanylate cyclase/phosphodiesterase [Gallionella
           capsiferriformans ES-2]
          Length = 469

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 100/416 (24%), Positives = 209/416 (50%), Gaps = 7/416 (1%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F++RL   +  +  D  +   V+   ++ Y++I D  G ++   +L ++  R+    
Sbjct: 54  RSLFVERLIQDMSRAQRDKRM-VAVLRFSLEPYRQIQDEYGHSMAALLLRTVAERLKLQA 112

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFAS 662
           +  D +  L  N   +I+   +N+   ADF+  M  S A  P+   +RE+ V A IG A 
Sbjct: 113 RAGDTVGHLGENELRLIMPDLDNAQAAADFSARMTDSFAHTPLKFGDREVFVQAYIGIAL 172

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
           +    + +  +L++AE+A+ HAK  G   ++ + V    +  +  ++ +  A+E  E  +
Sbjct: 173 YPLDGVNADILLQHAEIALCHAKEEGLCSMQYYSVRMSDAAGLTFEDVMQRALECGEFVV 232

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P+  L D  I  +EALI W  P+ G +S S+FM   E+L +I  +  ++L+ + R I
Sbjct: 233 HYAPVRDLADGRICAVEALIYWQSPEQGMLSPSQFMPQLEKLGLIVPVGAWLLDTVCRQI 292

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR--IKLSFSESVVMGN 840
             W++      + + I++++  +  ++     Q ++ +   + +   ++L  SES++M +
Sbjct: 293 ALWQNNGLD-SLTVSIHLSALQIRQSDFASLFQTVLQRYGLARNAAVLELHVSESLLMQD 351

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            + +  +L  L+++G+ + + DFGT  S L+YL Y+  DT+K +   +     + +  AI
Sbjct: 352 LDTTAGVLQALKEMGVQIGIVDFGTGHSCLNYLKYLSVDTLKIDPVFIRNLPHSREDAAI 411

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +++I+ + + +   ++   +     +  L   GC   Q   V  P+  ++I ++LK
Sbjct: 412 IKAIVTLGQGLGLKVVGTGVEVAAQLAWLRDAGCHEAQGDFVGPPILPDAIAEILK 467


>gi|332534458|ref|ZP_08410297.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036111|gb|EGI72587.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 771

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 200/444 (45%), Gaps = 17/444 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  +  + NDI ++    + I   A  D+LTG  NR + L+ L   LD SA       T+
Sbjct: 325 VAAFDSMGNDINQR---EQQISFQARHDSLTGFYNRSAMLEVLDDELDSSAE-----YTL 376

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNS 627
           + IDI   + IND LG  +GDD L ++  RI E         AR+ G+ F  +  +    
Sbjct: 377 VAIDIKGLRHINDKLGPRIGDDCLKAVACRISEFSDELGGFHARIGGDEFLTVFPTAAAR 436

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              +     +   +     + + +I +  S G   + +  I S ++++   +A+  A + 
Sbjct: 437 EHKSGIVG-LMAQLQACYTIQKLKINLRFSAGIVQYPTQGIASDDLMRRVLIAVESAANT 495

Query: 688 GGNHVESFRVSSFRS-DRVMIKEDLCLA--VENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             +             DR+++ ++L  A   ++ +L++ Y P + L  ++I  +E+LI+W
Sbjct: 496 QESIHYYQNGEDEAHLDRLIMLDELKQAISDDDGQLFMTYQPKLHLKSQKIDKVESLIRW 555

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  ++   F+ +AE+  +I  +  +++  +   +  W+ +     +   IN++++D
Sbjct: 556 QRKDGSWVNPELFIDLAEQSGLIVELTGWVVNTVVAQVADWQSK--NINLQAAINVSAQD 613

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        +   + K       I +  +E  ++ N E+    L  L+ IG+ ++LDD+G
Sbjct: 614 IAFPGFHAALVRTLKKYKVDSKLITIELTERDMIENEEKGIKALENLKAIGVKISLDDYG 673

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              + L  L  +P D +K +   +     ++K   I++S I +   +  +++A+ +    
Sbjct: 674 VGQTSLGRLKMLPIDELKLDKCFILKLDESQKDQFIVQSSITLGHQLGFSVVAEGVETLG 733

Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946
            +  L  M CD+ Q  +++ PL  
Sbjct: 734 SLNLLRGMQCDHAQGYYLSRPLKA 757


>gi|37676798|ref|NP_937194.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37201342|dbj|BAC97164.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 629

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 195/440 (44%), Gaps = 19/440 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +  +      DNLTG+ NR    D L T+   S        +++ IDID +K IND+ 
Sbjct: 190 QLVNQLSYEVSHDNLTGLLNRSCLSDTLETLTQQSDR----PFSLVCIDIDNFKLINDIH 245

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD ++      I   L  P +  R++G+ F  I  SE            +   IA 
Sbjct: 246 GTYIGDQIIKFTAHAIQSALPAPALAYRVAGDEFAFITYSETPEE----VCEHILNKIAF 301

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                   +    SIG A  +   ITS E+  NA LAM   K    N +  +        
Sbjct: 302 GYQDNANHVRFDISIGIAKASQRLITSDELFLNASLAMKECKKHPNNRIRCYDTHLSALY 361

Query: 704 RV--MIKEDLCL-----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                + E +         E +E+Y+   PI+ +        E L +WD  ++G+IS  E
Sbjct: 362 HRKTQLIEAIREQLAKPIDEATEIYVAIQPIVNVHKPRWDYFEVLARWDSAEYGSISPVE 421

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQ 815
           F+  AE+  +I  +   ++E   R   ++ +++    + + +N ++ +L D E     + 
Sbjct: 422 FIDAAEQSGLIVQLGERIIELACR-AKNYLEESLGYRVKLGVNCSAYELNDEERYLNYLN 480

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ K    P    +  +E+V++    +  ++L  LR  G  + LDDFGT  S L+Y+  
Sbjct: 481 KMMQKYHLDPRDFVIELTETVLLTQTGKEHMVLDALRDRGFKVALDDFGTGYSSLNYIHS 540

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P DT+K + S +      +    ++  I  +A  ++  ++A+ +  E+ +K+L  MGC+
Sbjct: 541 YPIDTIKIDASFIRNMLCNDTAERVVWLITQLALQLKVNLVAEGVEEELALKKLVDMGCE 600

Query: 934 YIQDSHVASPLGFNSILKLL 953
            IQ  + + P+  + I+  L
Sbjct: 601 QIQGYYYSRPMKPSRIVDKL 620


>gi|92114262|ref|YP_574190.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
 gi|91797352|gb|ABE59491.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 693

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 114/669 (17%), Positives = 243/669 (36%), Gaps = 39/669 (5%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
             +  A +       ++     G    +L++   +++    +   MA   R      Q  
Sbjct: 36  IALFCALVAGSGLAVLMSLFFDGSMTGLLIVIGGVILLATLLLRRMARQTRDSIRQWQAL 95

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           L            +  ++ +L         + +  +  +  +      +W  D  R    
Sbjct: 96  LNAQQRQADQQEAWRRMRELLQRDLDEDAFLRALLDTTAEVLGVERAGLWFLDEDRALTC 155

Query: 430 TTPDIATI--LGLASGSMHGPIRNWL--------PYIHINDRDNFRTILD----SFVGYR 475
               I ++  L L    + G + +             H       R  L       +   
Sbjct: 156 RMSLIDSLNGLRLPPNGLDGYLASLTYNPCLVTSDAQHDERLAGLRDYLRDNRIQAMLDV 215

Query: 476 RGRLQYEFR--VRAADNQFH-WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +  E R  +         W    I  +    G + ++         +++    +   
Sbjct: 216 GIFVGGELRGAICCESTHPREWQGDEITSLMGFAGLLSQFSESLR----RREVEHDLYRQ 271

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D ++ +   +  L+RL  ++       +    ++V+ +     IN+ LG   GD+ +
Sbjct: 272 LHHDEVSDLATLKGLLERLHALI-----RSHGSFHLLVVRLGGLSHINETLGQQAGDEAI 326

Query: 593 VSLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             +  ++ E L       ++ RL  NR  I +  + +          +         +  
Sbjct: 327 RQVAAKLKERLTELQGEILIGRLPANRLLITIPGQTDDSLRRYCLQRLLTLGDGTWRVFG 386

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MI 707
               +  +IG   +         +L+ AELA+ HA+    +H+  +       +     +
Sbjct: 387 TPCQLRFNIGVTRYPYDASDIESLLQRAELAVQHARETLPHHLAFYTSQLSDWEHRLSRL 446

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + +L  A++  +L L            + G E L++W HP+ G ++   F+  AE   +I
Sbjct: 447 ERELRTALDAQQLRLYLQGQFD-TSGRLAGAEVLLRWQHPREGLLAPGSFIAEAEHSGLI 505

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + +  ++LE+    +           + + +N++ + L D+     +  L+ +  ++P R
Sbjct: 506 RPMGQWVLEQACALLGGVLR---DSDLTLSVNVSVQQLHDDAFITTLTHLLDRHGFAPHR 562

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L   ES+++         L  LR +GI L LDDFGT  S L YL     D +K +   
Sbjct: 563 LILEVVESLLV--TPGVASRLNALRALGIRLALDDFGTGYSSLRYLQDFQVDEIKIDKIF 620

Query: 888 MTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +    E++ A ++RSII + K +E  ++A+ I        L   G D++Q  ++A P   
Sbjct: 621 VDAIKERQDAPLVRSIIALGKALELRVVAEGIESAFQQDYLVTNGVDFLQGYYLARPEPV 680

Query: 947 NSILKLLKE 955
           ++ L+ L  
Sbjct: 681 DAFLRRLDA 689


>gi|254784390|ref|YP_003071818.1| PAS sensor diguanylate cyclase/phophodiesterase [Teredinibacter
           turnerae T7901]
 gi|237686738|gb|ACR14002.1| PAS sensor diguanylate cyclase/phophodiesterase [Teredinibacter
           turnerae T7901]
          Length = 610

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 94/504 (18%), Positives = 208/504 (41%), Gaps = 35/504 (6%)

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
               R  L   +      L+ + R R A             +SN          +  +I 
Sbjct: 118 HQRERARLHRELEQLNCELEEKVRDRTA----------ALVVSNRQ--------LREEIK 159

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++   + +   A  D +T + NR +F DR T  +  +A        ++ +D+D+++ IN
Sbjct: 160 ERRYMQDRLQYLATHDFVTRLYNRNAFDDRATKAV-QAAQLGVEEGCLVQLDLDRFRLIN 218

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G   GD++L      +  +++  D LARL  ++F +I    N+  ++  F     K 
Sbjct: 219 ESCGYIAGDELLRQFADMLASVIEPDDFLARLGSDKFALICHDLNHGRRLVKFLQQQVKD 278

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                +  +R  ++ AS        S ++  +++   +  +Y  K +    +    ++  
Sbjct: 279 FE--FSWDDRVFSLDASFALVRINRSIVSFDQLMLMVDEVVYQLKQQKVPFLTYDDITQS 336

Query: 701 RSDRV---MIKEDLCLAVENSELYLVYH-------PIIRLMDEEIVGLEALIQ-WDHPKW 749
             +          +   ++  +  + +        P        +V +E L++ WD  K 
Sbjct: 337 NPEGRGKVKWAIRIMDGLKREKFRIFFQKVVPLTAPAGADKGRPLVRIETLVRLWDSQKS 396

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             I   EF+  AE   +I  I+ +M+  + +   +  D  +     I IN+++  + D +
Sbjct: 397 RVIFPDEFIPSAERYNLIGEIDRWMVASVLQYFSAHVDLLDAVD-KISINLSAVSIRDPQ 455

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  ++ +T   P+++    +E+  + N   ++  +  L ++G+S  LDDFG+    
Sbjct: 456 LVNFITKILQETGVPPNKVSFEITETEAIINMGSAKQFIDELHRVGVSFALDDFGSGFCS 515

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            +YL  +PFD +K +G  +    +    + +++SII + K ++  I+A+ +  +   + L
Sbjct: 516 FNYLRELPFDALKIDGVFIKDIDKNTTHLELVKSIIDVGKQLDKVIVAEFVENQAIAEIL 575

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
             +G  + Q      P     + +
Sbjct: 576 ISLGVGWGQGYFFHKPAPIEELQQ 599


>gi|296534717|ref|ZP_06897101.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296264955|gb|EFH11196.1| sensory box/GGDEF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 507

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 109/471 (23%), Positives = 197/471 (41%), Gaps = 17/471 (3%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           + +R    +  + D +W+ D        +  + T+LG     + G  R     +  ++  
Sbjct: 36  ERDRLRAMLDTNSDWIWEVDAQGRYTFASAHVETLLGYRPEQVLG--RTPFDLMPPDEAA 93

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
              +I       +        R R AD +   +     P+   +G +L Y G+  D+TE+
Sbjct: 94  RIGSIFAEIAARKAPFSGLLNRNRHADGRIVVLETSGVPLLAEDGALLGYRGVDRDVTER 153

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     I   A  D+LTG+ NR  F  RL   L            ++++D+D +K++ND 
Sbjct: 154 EARTARIAWMARHDSLTGLANRMEFQSRLEDRLAR-----GEPAGLLLLDLDYFKEVNDQ 208

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG A GD +L  +  R+  LL    + ARL G+ F  +L       +    A  +  ++ 
Sbjct: 209 LGHASGDVLLRQVAERLTGLLPEGSLGARLGGDEFAALL--AAGPEQAQAVAQRLAAALC 266

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P  L      V  S G A       + S +L+ A+LA+Y AK  G  HV  +       
Sbjct: 267 EPYQLDGHRAVVGVSCGLALAPRHAGSVSALLRCADLALYQAKQEGRGHVCLYGPQLEAR 326

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    ++  L  A+   ++ L Y  +  L D  ++G      W HP  G + +  F+ +
Sbjct: 327 QRSDEGLEAALRRAIAQEDITLGYRTLRALADGRVLGRCVEPGWWHPLHGALPAESFLGL 386

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A+   ++  +   +L R  R+ + W     +        + +  L D      +Q ++++
Sbjct: 387 ADRTGLVLPLGAQLLRRACREALEWPQSWRLTRP-----VTAVQLRDPGFPGLVQQVLAE 441

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           T   P+R++L+ +E   +G        L +LR+ G +L LD FG   + L+
Sbjct: 442 TGLDPARLELAVTE-AALGAGTSLPRALRKLREQGAALALDRFGEGVTSLA 491


>gi|163785496|ref|ZP_02180087.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879236|gb|EDP73149.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 7/349 (2%)

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RLSG+ FGI +  EN   ++  F   ++        +    ++++ SIG A        +
Sbjct: 1   RLSGDEFGITVEYEN-QQQLNQFIKNIKLLFKNEFVINNLPMSLSISIGIALHPEHGDDA 59

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPII 728
            E+LK+A+ A+Y AK  G N    F        +  I+  + +  A+   E + VY PII
Sbjct: 60  FELLKHADSALYKAKKEGKNRYIIFNKEFEEELKEKIELEQSIREALGKEEFFFVYQPII 119

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L    IVG EALI+W   K G +S ++F+ +AEE  +I  I+ ++L +    +      
Sbjct: 120 DLNTNNIVGAEALIRWQSEKLGFVSPAKFIPLAEESDLILEIDEYVLRKNLEFVEKLMR- 178

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
            N+  + I +N ++K      + + +  +I         I+L  +E  +M + E +   L
Sbjct: 179 GNINHLNIALNFSAKFFRKGLVYKKLSEIIKDKNI-CRCIELEITEREIMQDVEENLKTL 237

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMA 906
             L+ +G  +++DDFGT  S LSYL  +P D +K + S +    E    + I ++II MA
Sbjct: 238 NLLKSMGFKISIDDFGTGYSSLSYLKKLPIDLLKIDISFIRDIPEDMNDVVITKTIINMA 297

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            N+    IA+ I  E  +  L   GCDY Q  + + PL     ++L+K+
Sbjct: 298 HNLGLKTIAEGIEREEQLYFLKDEGCDYGQGYYFSKPLPEKEFIELIKK 346


>gi|312883320|ref|ZP_07743046.1| signal transduction protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368936|gb|EFP96462.1| signal transduction protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 589

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/569 (21%), Positives = 229/569 (40%), Gaps = 13/569 (2%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +HV      ++         S  +    D ++  +   +     P   +  G+A G  H 
Sbjct: 27  EHVFIGLTGAELDLLMDNHFSHMIDVLNDGIFYMNDRDNVCFYNPSFYSRFGIAPG--HT 84

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            + +W+  IH  D+  F+  +++ +     R+  ++RVR  + Q+ W+          NG
Sbjct: 85  HLSHWINLIHPQDQHVFKGEVEAHILQNGTRMTTQYRVRCKNGQYIWLEGTA-ITKTVNG 143

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
                IG   DI+++K     +  ++  DN +G+ N      +L   L+    D      
Sbjct: 144 Q-RFMIGCHRDISDRKLMESYVKQSSLMDNSSGLSN----EQKLALDLETLNIDTEHSYH 198

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M I     +    + G  +  ++L  LT  +GE   +     R+  + F +++  + + 
Sbjct: 199 LMYIQPGATRSYQTLYGSQLMRNLLSHLTSMLGEFPDYFVDFYRIQSHDFAVLIRGDYSE 258

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--K 685
             + D A  +  +    I ++E       SIG     +  + + E+++ A     +A  K
Sbjct: 259 RALHDLAARIYDAYQESIKVIEFLGAANISIGIYPNITCDVPTDEIVRVAAQTSQYANHK 318

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              G    S            I+++L  A++N +L + + PII     ++   E+L++W 
Sbjct: 319 REDGIRTYSGVTKQKVDRHFFIEKELGNAIQNDKLSVKFQPIICSKSLDVASFESLVRWR 378

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            PK G I   EF+ IAE    I  +  F+ E+  + I  +    N   I + +N++   L
Sbjct: 379 CPKMGEIYPDEFIHIAEAKGFISELGYFVFEKACQFINEY-KSNNKKNIKVNVNVSVLQL 437

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           L     E ++ L  K       I L  +E++++ + + +   L RL+  G  L+LDDFG 
Sbjct: 438 LTKHFPENIKQLAEKYRIDSDTIVLELTETIILDDNKNAIEQLNRLKSFGFKLSLDDFGA 497

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEID 923
             S L     +P   +K + S+   S         L  I  + K     I+ + I     
Sbjct: 498 GHSSLKGFFDLPLSQIKIDKSIAWRSLNNSATFEYLSFITKLCKAHNIDIVIEGIENAEM 557

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +   +MG  Y+Q    + PL   S  + 
Sbjct: 558 QQIFIKMGASYLQGFLFSKPLSLASACRY 586


>gi|126651013|ref|ZP_01723224.1| sensory box, GGDEF family protein [Bacillus sp. B14905]
 gi|126592214|gb|EAZ86263.1| sensory box, GGDEF family protein [Bacillus sp. B14905]
          Length = 674

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 114/542 (21%), Positives = 227/542 (41%), Gaps = 25/542 (4%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGR 478
             D     +    +           + G    +      NDR +    I+   +      
Sbjct: 147 TLDHDGFILECNNEFLKTSQWTPKRVIGK--TFWQLFPDNDRSEKVTNIIWRNLNN-GHT 203

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            Q E        Q +W+++   P  N      ++  I  DIT+ K     +   A+ D  
Sbjct: 204 WQGEVEKITKAGQSYWVLLTAIPTFNLETGEQQFFLIEKDITKSKTIQHQLEKIAYIDTE 263

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N      RL  ++     DD    + + + IDK+  + ++    +   +++  T R
Sbjct: 264 TGLMN----AHRLEKVISNMIEDDR-HFSFVYLSIDKFYTLKELHDQQIDQSLIIEFTNR 318

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           I  +      +AR++ N F +I                +      PI      + ++ S 
Sbjct: 319 IK-MYFQDSTMARINENDFVVITPLSE-----WFIQGFLSYLQQHPIYSGNIAVPISISG 372

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G   +   + T S+++K +   +   +  GG+ + S   ++ ++      I++ L  A++
Sbjct: 373 GITRYPEDQTTFSQLMKASIATISTVREAGGDKIVSLSTATHKALNRKALIEKRLLQALD 432

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
              L ++Y P I +   +I  +EAL++W+    G +S  E + IAEE  +I  I  FMLE
Sbjct: 433 QKNLKVLYQPQIDVYSGKITAVEALVRWEDEVIGVVSPDELIPIAEETGLINNIGSFMLE 492

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           R     + W+   +   + + IN + ++  D  + + +  +I+KT    + +++  +E  
Sbjct: 493 RACEQALIWKKAGHD--LKVSINSSVREFRDKNMAKSILEMIAKTGCPANLLQIEITEKF 550

Query: 837 VMGNPERSRLLLGRLRKI---GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
            +   E +  +  ++RK+   GIS  LDDFGT      Y+  +P DTVK + +       
Sbjct: 551 ALE-AEAATSIAQQMRKLENEGISFILDDFGTGYGSFRYMQILPIDTVKIDKTFTNSLLK 609

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +EK   ++  ++ + K++E  ++A+ +        L   GCD IQ  +++ P+  + I  
Sbjct: 610 SEKSQKLMNGMVQLGKSMELKVVAEGVETAEQADLLITYGCDAIQGYYISKPVTSDEIEA 669

Query: 952 LL 953
           LL
Sbjct: 670 LL 671


>gi|317046363|ref|YP_004114011.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Pantoea sp. At-9b]
 gi|316947980|gb|ADU67455.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Pantoea sp. At-9b]
          Length = 671

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 198/439 (45%), Gaps = 11/439 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +        +T +PNR  FL  L   +      +     +MVI ID  ++ N VL  
Sbjct: 236 HDEMSRLTTHFAVTDLPNRTLFLALLDQHIHHRHRSE--PWGLMVIRIDTLQEANGVLSD 293

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D ++++L  +I   +    +LA+   + F +++   +N  +    A  +   I  P+
Sbjct: 294 DQRDTLMLTLVEKIRSTIDDHTLLAQTGQSDFALLMKRAHNPFRAMRLARNLMLRINQPV 353

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           NL + ++   ASIG A    + I++SE L  A  AM  A+H+G N +  F  +     + 
Sbjct: 354 NLQQLQLRPNASIGLALHDDTPISASEQLDRATSAMMSARHQGKNQILFFDPALTERAQK 413

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+   +++ E  L   P I +   E+ G EAL++   P      S EF+  AEE
Sbjct: 414 RLTQEHDILQGLQDEEFALYLQPQINMATGELAGAEALLRMRQPDGSWGLSEEFIASAEE 473

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I +I  ++ E   R I +W+ Q     I + +NI++  L D  +   +Q L+ +   
Sbjct: 474 IGVIASIGRWVFEEACRIIAAWQKQGIN--IPLSVNISAVQLRDASVVSHLQGLLERHRI 531

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI---PFDT 880
           +P    L  +E+  +G+ E++  LL  L++ G+++ LDDFG   S L+YL      P + 
Sbjct: 532 TPGNFVLEITETAKIGDAEQAIALLRMLQQTGVAVALDDFGMGYSNLNYLHQFKALPVNK 591

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K + S +         ++R +  +A+ I   +IA+ +        L   G    Q    
Sbjct: 592 LKMDRSFVAAL-PDDDTMVRIVAAIAEIIHLDVIAEGVETSEQRDWLLARGITIGQGYLY 650

Query: 941 ASPLGFNSI-LKLLKERFP 958
           A  L  +    + L +  P
Sbjct: 651 AEALPLDVFNQRWLDKPSP 669


>gi|294339054|emb|CAZ87403.1| hypothetical protein; putative EAL, GGDEF and membrane domains
           [Thiomonas sp. 3As]
          Length = 799

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 197/451 (43%), Gaps = 21/451 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +     A +D+LTG+ NR++F+ +L+  L       +    V +ID+D++K +ND 
Sbjct: 192 RDEYKTYRTIAHRDDLTGLANRRAFMQKLSATLVK---HPHQALAVGMIDLDRFKIVNDR 248

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG +VGD +LV++ +R+  +L+  D+LARL G+ F ++     +  ++   A  + KS+ 
Sbjct: 249 LGHSVGDQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLVKSME 308

Query: 643 MPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               +    + +  S+G      +K   +  +++ A+LAMY +K  G      F      
Sbjct: 309 QEFTVQSHALQIGLSLGIVIQQQAKPVDALTLMRRADLAMYASKEGGRQQYRFFDQHMED 368

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE------IVGLEALIQWDHPKWGNIS 753
              +       +  A+ ++ L L Y PI+            +   EAL++      G  +
Sbjct: 369 ALQEHDRKLNWVLDALHHNRLELHYQPILSFDGGTAAGVVGVHSAEALLRLRDAD-GVHT 427

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           +  F  + ++  +   +  F+L         W  Q     I + +NI+ +  LD +    
Sbjct: 428 AGAFESVLDDEQIGVPVGRFVLSAALDQAQRWHLQGRE--IQVNVNISPRHFLDPQFLSD 485

Query: 814 MQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           ++  + +     P R+ L  +E     +   +  ++ R R +G+ + LDDFGT  + L++
Sbjct: 486 LRTALERHPQCPPERLVLEVTEHGSELDSRMASFVVSRCRHLGVRVALDDFGTGSASLTH 545

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +   +VK + S       +   ++I   ++  A  +   ++A+ +        L  M
Sbjct: 546 LQQLEVSSVKIDRSFTRDLFTSGAGLSITYGLLRTAALMGLAVVAEGVSTPQHALALASM 605

Query: 931 GCDYIQDSHVASPLGFNSILKLL---KERFP 958
            C   Q   +A P+   ++   L   + + P
Sbjct: 606 SCRRFQGYAIARPMTAEAMDAWLTTWRSQLP 636


>gi|225388957|ref|ZP_03758681.1| hypothetical protein CLOSTASPAR_02699 [Clostridium asparagiforme
           DSM 15981]
 gi|225044980|gb|EEG55226.1| hypothetical protein CLOSTASPAR_02699 [Clostridium asparagiforme
           DSM 15981]
          Length = 758

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 111/559 (19%), Positives = 208/559 (37%), Gaps = 44/559 (7%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS-------FVGYRRG 477
           R ++  +   A   G     + G     L  +   +R      L+        +     G
Sbjct: 210 RGKLILSSGTALANGGQPQELAG-----LAGLSEKERAAVEEALEQNSSVHFNYKAGNTG 264

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPM--------SNSNGDILRYIGIANDIT----EQKKS 525
            L     V        W ++   P+          S G +L  +   +  T     Q++ 
Sbjct: 265 MLA----VLEPSGVEDWFVLCSIPVAALNQRYVVTSAGAMLIIVAACSLFTLLLWRQRRM 320

Query: 526 LEGI----LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +          A++D+LTG  N   FL  +   L       +    V   D+ K+K  ND
Sbjct: 321 MNRNQAVVERLAYEDSLTGGRNYNQFL--MEAEL---VRRQDGWMAVWYCDLKKFKYYND 375

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG A GDD+L  + R    L +   +  RL  + F  +            F+  +R+  
Sbjct: 376 ALGYAAGDDMLRRMYRLFERLEQPDGLFCRLMADNFVGLRWYAEREELTEWFSRVVREFH 435

Query: 642 AMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                   R         +    S   +T +EM+  A +A    K   G+    F  +  
Sbjct: 436 QEESETASRSYIELCMGFYCPDPSDSGLTVNEMVNRANMAQKSIKGESGSRCAFFNETLR 495

Query: 701 RSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEF 757
           +  +    ++     A+   +    + P   +     + G E L +W HP+ G I   +F
Sbjct: 496 QRFQQEAAMEAQGQQALAEGQFQPYFQPKFDIQHGDRLAGAEVLCRWIHPQKGMIPPDQF 555

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+  +I  ++ +M E+       + D      I + +N++   LL  +  +    +
Sbjct: 556 IPVFEKSGLIMQLDRYMFEQACSWYRRYLD-GGGARINLAVNVSRAGLLREDFVDYYVRV 614

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                     ++L  +ES+ +G  E    L+  L+  G + +LDDFG+  S L+ L  +P
Sbjct: 615 KETYGIPDGAMELEVTESLALGGEELLCQLVRELQAHGFTCSLDDFGSGYSSLNLLKNLP 674

Query: 878 FDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +      S +  +   ++R+II MA+ ++  +IA+ +     ++ L   GCD +
Sbjct: 675 IRVLKLDILFFQRSVDKVRERIVVRNIINMARELKIRVIAEGVEETESVEFLRGAGCDIV 734

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    A P+       LL 
Sbjct: 735 QGYVFAKPMPLAEFEALLA 753


>gi|302669259|ref|YP_003832409.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396923|gb|ADL35827.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 737

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 102/458 (22%), Positives = 194/458 (42%), Gaps = 18/458 (3%)

Query: 507 GDILRYIGIANDITEQK----KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           G IL    +   +  QK    +  E +      D LTG+ +   F  ++  +L     + 
Sbjct: 279 GTILFAALVIMIVLRQKAYFEEQKEKMRIMEDIDPLTGVLSHNGFRKKVEELLTN---NP 335

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +   T+   +I  +K IND  G   GD++L   T R  E+L   + + R  G+ F  IL 
Sbjct: 336 DTPYTISYNNIKDFKFINDSFGWKAGDELLKFWTERSLEVLTDKEAIGRYDGDHFV-ILR 394

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVT-ASIGFASWTSSKIT--SSEMLKNAEL 679
               + +I      +   +    +   ++  V   S  +             +ML  A +
Sbjct: 395 CIGGNEQILQDEKYILTPVRNYFSDRGKDFVVRLCSGIYVLMPEDYKDINVDKMLDYARI 454

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A    +       E +    +   R    I   L  A+E+ E+ + Y P +      I G
Sbjct: 455 AERKVRESKKEGFEFYNPKQWDMGRKSAGIASHLPAAIESGEIQVWYQPQVNYKTGMITG 514

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL +W   K GNIS  EF+ + E+  +I  ++  + + + +D+  W DQ     + + 
Sbjct: 515 AEALCRWKSKKDGNISPGEFIPVLEDAGLIYDLDCHVWDTVCKDLKRWNDQGRQ--LCVS 572

Query: 798 INIASKDLL-DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
           +N++  D++ + ++      L       P ++++  +ES  + N +       +LR+ G 
Sbjct: 573 VNLSRLDIVKNPDVAYHFNTLKEFYNLLPGQLRIEITESAYVENSDTIIKTTTKLREAGF 632

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTII 914
            + +DDFG+  S L+ L  +  D +K +   +TGS +++    IL  ++ M   I T+II
Sbjct: 633 EVEMDDFGSGYSSLNMLKEVILDRIKLDLRFITGSGDQKMGRTILSYMVQMIHAIGTSII 692

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           A+ +        L  +GC+ +Q  +   P+  +   +L
Sbjct: 693 AEGVETLEQADFLGSLGCEEMQGYYFYKPMPVDEFEEL 730


>gi|85713661|ref|ZP_01044651.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
 gi|85699565|gb|EAQ37432.1| diguanylate cyclase/phophodiesterase [Nitrobacter sp. Nb-311A]
          Length = 557

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 111/550 (20%), Positives = 229/550 (41%), Gaps = 22/550 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
            +   G   + WDI  D +T T   A+I  G+    +      +   I  +       + 
Sbjct: 4   ILAALGRAAFAWDIPSDTMTWTEGAASIFQGIDPA-LLATGAGYGSLIEPSGSIRVDVLS 62

Query: 469 D----SFVGYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                  +       + E+ +RA+ +    W+       ++++G  +R  GI     E++
Sbjct: 63  ATPTTRRLCEGGVPYRIEYGLRASASTPALWIEESGCWFADADGKTVRVEGIVRLENERR 122

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              E ++  +  D LTG  NR      L   ++ +          M++ ID   +IN+  
Sbjct: 123 ARDERLISLSRNDALTGELNRTYLTAALAEAIEEATRY-RSSFAFMMVGIDHLARINNAF 181

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  V D+V+  + RRI   L+  D+L R SGN+FG+IL +       +  A  +   I  
Sbjct: 182 GFDVADEVIGDVARRIRARLRGGDVLGRFSGNKFGVILKNCG-LDDASVAAERLLAGIRE 240

Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            I +     ++VTASIG         T+ E +  A+  +  AK R    +  +R    R 
Sbjct: 241 EIVITKSGPVSVTASIGAVLAPRYARTADEAINRAQEILEAAKSRRSGSLAMWRPDIERD 300

Query: 703 DRVMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  I     +++  A+    +   +  +      E    E L++ +      + + + +
Sbjct: 301 AQRRINIRVTDEIVTALNERRILTAFERVADARTREAAFYECLVRMEQHNGQVLLAPDVV 360

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE+L +I+ ++  +LE +  ++         P + + +NI+ +  +D +    ++AL+
Sbjct: 361 PVAEKLGLIRLVDHRVLELVIAELAEA------PQVRLSLNISPETTMDVDWWAAIEALM 414

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                   R+ +  +E+  + + +  +  + RL+ +G  + +DDFG   +    L  +  
Sbjct: 415 GAHPGVAERLIVEITETAAIQDIDDIQQFVVRLKNLGSRIAIDDFGAGYTSFRNLRKLGV 474

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK +G+ +     +    A ++++I +A+ ++   +A+ +  E     L   GCDYIQ
Sbjct: 475 DIVKIDGAFVQNLAHSSDDRAFVQTLIDLARRLDIRTVAEWVQDEQSAAMLRDWGCDYIQ 534

Query: 937 DSHVASPLGF 946
              +      
Sbjct: 535 GRLIGLASPA 544


>gi|254522469|ref|ZP_05134524.1| C-di-GMP phosphodiesterase A [Stenotrophomonas sp. SKA14]
 gi|219720060|gb|EED38585.1| C-di-GMP phosphodiesterase A [Stenotrophomonas sp. SKA14]
          Length = 590

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 184/409 (44%), Gaps = 5/409 (1%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             +   A        +M +DID +  +N+ +   VGD  LV + +R+   L+    L R 
Sbjct: 26  QAMVADAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRH 85

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             + F I +    +     DFA  +R+ + +P+++L   + +T  +G +       ++S 
Sbjct: 86  GSDEFLIAVPRTADVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASSTSR 145

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +L +AE A+Y A   GGN V    V +  S      I   +  A+ N EL L Y P++  
Sbjct: 146 LLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSA 205

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  +VG+EAL++W  P  G +    FM  AE L +I  I  ++LE   +    WRDQ  
Sbjct: 206 RDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARMWRDQGF 265

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I +N+++  LL       + +L+         + L  +ES +  N       L  
Sbjct: 266 D-DFTIAVNVSTLQLLRPNFFAEVMSLMQAAGVPAHMLTLEINESALTNNVNFVHETLAN 324

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKN 908
           LR  GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   
Sbjct: 325 LRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQ 384

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +  T+IA  +  +  +  L R  CD  Q      P+  ++    L+ R+
Sbjct: 385 LGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRY 433


>gi|95931153|ref|ZP_01313877.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132800|gb|EAT14475.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 671

 Score =  345 bits (885), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 103/571 (18%), Positives = 207/571 (36%), Gaps = 26/571 (4%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           ++     I   L   +  +   S   +    V  S  IV   +              +  
Sbjct: 111 LIATIETIVDRLHAQHLLEEKDSLLRQYKKIVDLSASIV-MVNRGGMITYVNDRFCDLSR 169

Query: 440 LASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
               ++ G    +    H +  + F R +  +    +    Q   + R  D    ++   
Sbjct: 170 YQRQALVGQP--YKKVWHPDMPEGFFRDVWKTITKQK--VWQGIMKNRQQDGSIFYVDTT 225

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           I P+ N +G    YI I  DI++   S + +  +   D LT +PNR      +       
Sbjct: 226 IAPVLNVDGTTSEYISINVDISDLIMSKKQLEQDIVTDRLTELPNRIKLQQDIQEF---- 281

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRF 617
                   T+++ID+D++K++N + GI  GD VL    + +  L    +I   R++ + F
Sbjct: 282 -----DDFTILLIDLDRFKEVNLLFGIHFGDRVLQYFAQTLTRLASPHNISCYRIASDEF 336

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           G++   +   L             + P+   +    +  +         K    E L+  
Sbjct: 337 GLLAKFDQRELFRELVEEIKSFIESSPLQCEKVSFDIDFTCALLYSDRKKYIPVEQLQGT 396

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
                  +H    +     +     +     + +   + +  + + + PI  +    I  
Sbjct: 397 IEEAKEKRHFLLEYDAEAMLQKQYEENFQWTKKIKSGLHDDRVIIYFQPIYDIQQNCINK 456

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E L++   P    +S + F+  A+     + +   ++ +  +      +          
Sbjct: 457 YECLVRLIEPDGTVVSPALFLEAAKRSRHYRELTRTVITQACQAFKDRSESF-------S 509

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++ +DL D E  + + A +        R+ +   ES  + N    + +  RL   G+ 
Sbjct: 510 INLSIEDLADEETLDFLIASVECDQLQ-DRLIVEVLESEGIDNLTMIQKVFKRLTDAGLQ 568

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIA 915
           L +DDFG+  S  SYL  +P   +K +GSL+           I++SII  A  +    +A
Sbjct: 569 LAIDDFGSGYSNFSYLVDLPITYLKIDGSLVRTIDHDDSARIIVQSIIMFAHELGIKCVA 628

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           + +     +  +  +G DY Q  H+A P   
Sbjct: 629 EFVCSAEVLDAVKSLGVDYAQGFHIAQPQAV 659


>gi|240172640|ref|ZP_04751299.1| cyclic diguanylate phosphodiesterase domain-containing protein
            [Mycobacterium kansasii ATCC 12478]
          Length = 1328

 Score =  345 bits (885), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 106/455 (23%), Positives = 206/455 (45%), Gaps = 14/455 (3%)

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS---ATDDNLRPT 567
            R+     D++           +A  D LT +PNR+S    LT +   +   A     R  
Sbjct: 878  RFSVAFRDVSAL----AETHQHAMTDELTALPNRRSLATALTALSVNAPDLAPRAPARRA 933

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++++ + ++ +I   +G  + +++L  +  R+ + ++  D+LAR   N F I+L    + 
Sbjct: 934  LLLLHLSEFDEITGSIGRHMTEELLCRIANRLSQYVRPEDLLARTGDNEFAILLGEGADL 993

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +     A  +  +   P  L    + V A I  A +        E+L  AE A+ HAK  
Sbjct: 994  IAARAQAGRLLDAFGEPFRLDPVTVQVDARIAIALYPDHCDHPQELLNRAETAIPHAKGA 1053

Query: 688  -GGNHVESFRVSSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWD 745
                         +R     + +DL  A+ N  EL   Y P +   D  +  +EAL++W 
Sbjct: 1054 KSKVVAYDPAFELYRDSDPALVDDLRAALLNGNELTCHYQPKVNADDGSVHSVEALLRWQ 1113

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP  G +   EF+  AE   +++ +    L+     + SWRDQ     + + +N+++ +L
Sbjct: 1114 HPSRGMLLPEEFLPAAERAGLMRRVANRTLDLALAQLRSWRDQG--MNLTVAVNLSTTNL 1171

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            LD +L   ++ L+         + +  +ES +  +  RSR  +  L+ +G+ ++LDD+GT
Sbjct: 1172 LDLDLEGTIEGLLKAHGVPADALIVEITESTL-ADSVRSRNTVAALQHLGVRISLDDYGT 1230

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              S L+ L  +  D +K +   +       + +AI+RS + +A ++   ++A+ +  E+ 
Sbjct: 1231 GWSSLARLQDVSVDELKLDRVFVARLALDPRSVAIVRSTVALAHSLGADLVAEGVEDEVT 1290

Query: 924  IKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +  L R GC   Q    + PL  + +++ +    P
Sbjct: 1291 LSALRRYGCTITQGFVHSPPLPADEVVQWINSHVP 1325



 Score =  157 bits (397), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +  L  +   AF+D+LTG+ NR  FL+RL   +            V+ +D+D +K++N
Sbjct: 333 ENQALLAEVAQEAFRDSLTGLANRTRFLNRLERAIAARDQRP-TPIAVLCLDLDNFKQVN 391

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++LV +   +   L     +ARL G+ F +++    +  +    A  +  +
Sbjct: 392 DALGHPAGDELLVRVAGLLTASLDETATIARLGGDEFAVLIEG--SVEETQAAAHRVLDA 449

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               I +    +TV  SIG+   T+    T  E+L++A+LAMY AK  GG  + SF   
Sbjct: 450 FDAAIVIDGVPVTVRPSIGYTVATAGSSCTVDELLRHADLAMYAAKREGGERIRSFVPD 508


>gi|157962827|ref|YP_001502861.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157847827|gb|ABV88326.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
          Length = 492

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 118/477 (24%), Positives = 220/477 (46%), Gaps = 20/477 (4%)

Query: 483 FRVRAADNQFHWMII-RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
            R+R    Q    +  +   + +SNG +   +    D+     +L      + +D LT +
Sbjct: 26  LRLRHQLKQLFEFLDLKGIKLPSSNGSLTAKLSSLKDL---FSTLYTQSKQSERDKLTEL 82

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR S   ++  ++           +++++DI +++ +ND+ G   GD++L  +  R+  
Sbjct: 83  DNRLSMKRKMADLM------PLNNGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAVRVKS 136

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           L     ++AR++ + F I   SE   L++      +   + +P ++    IT    +G  
Sbjct: 137 LAAEGSLIARMNEDEFLIYFTSEMTELQLQQ----IIDKLQLPYDIFGSIITTRVQMGHL 192

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSEL 720
           +        S ML+  +LA+  AK       E            V I   L  A+ + EL
Sbjct: 193 ALKPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDAAQLREVSIINSLAKALRDGEL 252

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           Y+VY P   L       +EAL++W HP  GNIS +EF+ +AE   MI  ++ + L+++  
Sbjct: 253 YMVYQPKQSLPKGGCEQVEALMRWQHPLLGNISPAEFIPLAEYSGMIDIVSQWALDQVFV 312

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               WR       + + +N++++DL +  L  G++A + +     S I +  +ES +M +
Sbjct: 313 QQAVWRKS--DIKLQVAVNLSTQDLRNASLIAGIEARLEQYQLKASAISIEITESKLMQD 370

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            E +   + RLR +G+ + +DDFGT  S L+YL Y+P D VK + + +       +   I
Sbjct: 371 LEGAVETIKRLRCLGVDVAIDDFGTGHSSLAYLKYLPVDEVKIDKAFLEDLEVDARARHI 430

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLK 954
           + + I +AK +   +  + +  E  ++ L  MG D IQ    + PL    +  + LK
Sbjct: 431 MDTSIRLAKGLGFKVTVEGVETEDVLQLLLDMGVDKIQGDIFSKPLTAKELGARWLK 487


>gi|254820134|ref|ZP_05225135.1| cyclic diguanylate phosphodiesterase domain-containing protein
            [Mycobacterium intracellulare ATCC 13950]
          Length = 1288

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 112/463 (24%), Positives = 208/463 (44%), Gaps = 17/463 (3%)

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            R+     D++     L     +A  D LT +PNR S    LT +   +    ++      
Sbjct: 827  RFSLTFRDVS----LLHTNAKHAMTDELTALPNRHSLASALTALPTTAPGPTSIPGRARA 882

Query: 571  IDID------KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
                       + +I D +G   GD++L  +  R+   ++  D+LAR+  ++F ++L   
Sbjct: 883  RRALLLLSLSDFHEITDSIGRHFGDELLCHIANRLSGSVRRDDMLARVGDDQFAVLLADG 942

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
             N    +  A  + ++++ PI L    + V   I  A          E+L  AE AM HA
Sbjct: 943  ANLTAASAQAGRLLEALSEPIALDPITVQVEGRIAIALCPDHCDHPQELLGRAETAMAHA 1002

Query: 685  KH-RGGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALI 742
            +  R    V       +R++   + EDL  A  +  EL L Y P I   D  +  +EA++
Sbjct: 1003 ESARSKIAVYDSSFEVYRNNDPNLIEDLRTALFDTDELKLHYQPKIDGRDGSVHSVEAVL 1062

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W HP  G +   E + +AE   +++ I+   L    + +  WR+Q     + + +N+++
Sbjct: 1063 RWQHPTRGTLLPEEVLPVAERAGLMRKISNRTLSMALKQVRCWREQGIT--LTVAVNLST 1120

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             +LLD EL   ++ L++        + L  +ES ++ +  RSR  +  L+++GI ++LDD
Sbjct: 1121 TNLLDIELVGTVERLLANYDLPADALILEITESALV-DSARSRNTVAALQRLGIRISLDD 1179

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
            +GT  S L+ L  +  D +K +   +T         AI+RS + +A N+   ++A+ +  
Sbjct: 1180 YGTGWSSLARLQEVSVDELKLDRIFVTRLDHDARSVAIVRSTVALAHNLGADLVAEGVEN 1239

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +  +  L R GC   Q     +PL  + +   +    P    +
Sbjct: 1240 KGTLDALHRYGCMITQGYVHTAPLPPDELRNWIANHTPEPHTS 1282



 Score =  161 bits (407), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + +  L  +   AF+DNLTG+ NR  FL RL   +     +  +   V+ +D+D +K +N
Sbjct: 301 DNQNLLSEVAREAFRDNLTGLANRALFLQRLEQAVARRHPN-GMPIAVLCLDLDNFKSVN 359

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD++LV +  R+   L     +ARL G+ F  ++  E +  +    A  +  +
Sbjct: 360 DALGHPAGDELLVRVAGRLTAALGESGTIARLGGDEFAAVI--EASVQESQAAAHRILDA 417

Query: 641 IAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               I +    I V  SIGF   T  S  T  ++L++A+LAMY AK  GG  + SF   
Sbjct: 418 FTGAILIDGIPIMVRPSIGFTVCTGASACTVDQLLRHADLAMYAAKREGGQCIRSFMPD 476


>gi|237735782|ref|ZP_04566263.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381527|gb|EEO31618.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 619

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 174/427 (40%), Gaps = 13/427 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A++DNLTG+ NR  F+     I+  +      +   + IDI+ +K INDV G   GD +L
Sbjct: 192 AYRDNLTGVNNRLKFVLEARNIIKKTK----GQFAFLYIDIEHFKYINDVFGYQFGDKIL 247

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                 +   +   +  AR + + F IIL    +   +    I + + +   +   +   
Sbjct: 248 KKYAVVLANSIDKNETFARNNADSF-IILRHYESKEMLKQKQIEIDQILIDYVKKAKNGY 306

Query: 653 TVTASIGFASWTS--SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIK 708
            +    G   +     K+T  E +  A  A    K     H   +  +         MI+
Sbjct: 307 QIRLCCGICCYEDVIEKLTIDEYIDRAIFAQDTIKRTSEEHYAFYTEAIRNKLHMEKMIE 366

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A++N E  +   P + +   +I   EAL++W       I    F+ I E+   IK
Sbjct: 367 NRMQTALDNQEFLVYLQPKVNIKTGKIACAEALVRWKSEDR-LIYPDLFIPIFEKNMHIK 425

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I+ ++   +   I    D+   P   + +N++     +++       +  +       I
Sbjct: 426 EIDKYVYREVCSWIRKRIDEEL-PCYPVSVNVSKVQFYNSKFVNEYYQIKQEFGIPDRMI 484

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++ F+ESV     +    ++  LR  G   ++DDFG   S L+ L  +P D +K + +  
Sbjct: 485 EIEFTESVAFERTDLLIKIINDLRNYGFICSMDDFGKAYSSLNLLKDLPIDVLKLDSAFF 544

Query: 889 TGST-EKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             S    +   I++ II M  N+    +A+ +     ++ L  +GCD +Q      P+  
Sbjct: 545 EDSDNPDKVKLIIKDIIKMVNNLGIKTVAEGVEQVSQVEFLREVGCDLVQGYVYYKPMPI 604

Query: 947 NSILKLL 953
           N   KLL
Sbjct: 605 NEYEKLL 611


>gi|283796134|ref|ZP_06345287.1| putative sensory box protein/response regulator [Clostridium sp.
           M62/1]
 gi|291076350|gb|EFE13714.1| putative sensory box protein/response regulator [Clostridium sp.
           M62/1]
          Length = 669

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 115/543 (21%), Positives = 220/543 (40%), Gaps = 29/543 (5%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  D+  D    +  +   LGL+S  +H   R   P+++  DR+N++  L S +  RR 
Sbjct: 148 VFFGDVQEDVYYVSDKLREELGLSSNLVHQLFRQAEPFVYEKDRENYKRGLLSVMEERRE 207

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                 R +  D +  WM        + +   L + G   D+ ++  +          D+
Sbjct: 208 FYSQRLRFQGMDKRIRWMCCWGIIKWDGD-RPLFFSGCMTDLEDEFSA----------DS 256

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +TG+    + + RLT +     +++  + TV  I + ++  IND LG    D +L  +  
Sbjct: 257 VTGLLRYPAAVRRLTAL-----SEEKEQATVFGIGLSRFSVINDSLGRMEADRLLRQICA 311

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++ E L     L R+ G RF  +   +   ++I+     +R+ I         E+    +
Sbjct: 312 QLRERLY-GFELYRMDGVRFLAVCPGQVPDVRISGI---IRQCIQECYRKKGIEMKNPCA 367

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
           +G         +  E+++     +Y+AK      V  F        +   +  L L    
Sbjct: 368 LGMLRCPEDGRSGMELIERVMTCIYYAKRNPEQGVLRFSWDMLEKRQKETEMSLELCRNV 427

Query: 718 SE----LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            +      +V  PI+      I G E L +W+  +   +S   F+++ EE   I A   +
Sbjct: 428 RDQFKGFRVVIQPIVEGETGRIKGGEILSRWE-CRGTAVSPECFIMLMEENKQILAFGKW 486

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E+      S+  +   P   +  N++   + D+     M+  +S+   S   + L  +
Sbjct: 487 VFEQAVLACRSFMKE--RPDFTVSFNVSYLQITDSSFLPFMKETLSRYGVSGKNLILELT 544

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+     PE    L+   R +G+ L LDDFG   S L  L   P D VK +  +M    +
Sbjct: 545 ETHFDEAPEHLERLVKECRTMGMKLALDDFGKGYSNLQMLLRYPVDLVKLDREIMREIAQ 604

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            R    +++SI+      +  +  + +  E ++  + RM  DY+Q  +   PL    +L 
Sbjct: 605 SRTSRELVKSIVLACHRADKKVCVEGVETETELGIVKRMKADYVQGYYFYRPLNTQELLT 664

Query: 952 LLK 954
            + 
Sbjct: 665 KIS 667


>gi|260881573|ref|ZP_05893482.1| putative sensory box/GGDEF domain/EAL domain protein [Mitsuokella
           multacida DSM 20544]
 gi|260848782|gb|EEX68789.1| putative sensory box/GGDEF domain/EAL domain protein [Mitsuokella
           multacida DSM 20544]
          Length = 683

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 216/540 (40%), Gaps = 31/540 (5%)

Query: 430 TTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE----- 482
               +  +    S    ++    ++   +   D  +   +++  V       +       
Sbjct: 30  VNEAMWKLYDCQSKQEFLNLIGSSFRGMVMPEDCQSIGMMVEKSVHQSGSVTEERLANYS 89

Query: 483 ---FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
              F +R    +   +   IR +      +   + +  D   + +++E        D LT
Sbjct: 90  YLFFCIRTKIGRIRHVEGSIRRVCFHGKWLWSLLLV--DAHVRFRAVE-------HDALT 140

Query: 540 GIPNRQSFLDRL-TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
            +  R  F  R     +   A     R  +   ++  +K  N + G   GDD L  +   
Sbjct: 141 NLMGRHLFFSRASEREVADRAEGIFGRDVLAYFNLTNFKHYNAMYGAERGDDCLRRIAAV 200

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + E      +LAR+S + F  ++ +++   +I      +   +            + A I
Sbjct: 201 LREGF-PDSLLARMSADIFLALIPADDAQSRIEKVVQKVNGLLK------GEHTYLHAGI 253

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
            + S   + ++ S     A+ A    K   G     F     +   V   +   +  AVE
Sbjct: 254 RYFSAQEN-VSISMACDQAKAACDSIKRERGRAYCVFSEHLRQELAVRSYVIAHIDEAVE 312

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N  + + Y P++R +   + G+EAL +W  P +G +  ++F+ + EE  +I  ++ +++ 
Sbjct: 313 NGYIEIYYQPVVRTLTGNLAGMEALARWHDPVYGFLRPNQFIPVLEEERLIDKLDRYVIR 372

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +   +  A+ P + I  N++  D    ++   +++++ +       +++  +E+ 
Sbjct: 373 ECGRQLRR-QMDAHQPIVPISFNVSRMDFQLMDVLSEIESVVRENGLPRDCLRIEITETA 431

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           ++ +  R   ++ R R  G  + LDDFG+  S L+ L    FD +K +   +    +   
Sbjct: 432 MVQDRNRILEMIDRFRGNGYPVWLDDFGSGYSSLNVLKDYHFDELKIDMEFLRVFNDTSR 491

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I+ S++ MAK I    +A+ +     ++ L  +GC+ +Q  +   P+ ++ ++   +ER
Sbjct: 492 KIITSVVMMAKAIGIHTLAEGVETREQVEFLRSIGCEKLQGYYYGRPMPYDELVAHCRER 551


>gi|87122314|ref|ZP_01078196.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Marinomonas sp. MED121]
 gi|86162457|gb|EAQ63740.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Marinomonas sp. MED121]
          Length = 761

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 115/747 (15%), Positives = 262/747 (35%), Gaps = 47/747 (6%)

Query: 225 AWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY 284
           A  +L   ++ FG    L+                 + +  + F+ + L   +       
Sbjct: 29  ALRILLMTALFFGLAINLMTSIEAWRQDNF-----LIIAINLSFVLLTLFLIKASKHYSN 83

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAW 344
              +      ++  +     +      +  L  +        ++ G+K    A+      
Sbjct: 84  KLSATFLISLLISSLLMIPLIQDNQTLKHGLVFLYTLPILSRLFFGVKASLIAMGFNVLT 143

Query: 345 ILIFIWFIGLWMAITKRLD---------NDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
               +    + +   +            + ++   +   + L +  I +T+  +      
Sbjct: 144 YTYIVSDFNISLLPKQYDLTLPNTDMAFHTVVFVFINIAIPLAISRIFYTLEANAKQMEV 203

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGP-IRNWL 453
            +  I  + E        +G      +     +        +LG   S  +    I  WL
Sbjct: 204 LNNKINRNNELYEEIFEHTGTATLLCNRNGQILKANRKATKLLGFNDSNQLEESFINRWL 263

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             I    ++ +    ++     R   +    +  ++   H                  Y+
Sbjct: 264 APIG-ESKERYFWQSNASNCQLRSDDKIHIELHRSNLTTH----------------GYYV 306

Query: 514 GIANDITEQKKS-------LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               ++T  K          E     A  D LT +PN  +F   +   +      ++   
Sbjct: 307 MHLQNVTHLKAMRKVLDHTQERNSRLAKFDALTQLPNHSNFCQLVNQKIT--KGQEHKTG 364

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            + +I I ++K +N   G    + +++S TR++ E L    I +RL G +F   +     
Sbjct: 365 AMFIIRISQFKLLNKQFGQEKANQIIISFTRKLQENLSDKTITSRLRGVKFACFIPIGQT 424

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            L   + +  ++  +   + L    I +   +G +   S    + E++++ E+A+ +A  
Sbjct: 425 YLIQRNLSALIQSVLPPQLKLNGESINLEYHVGISYTPSDGTNAQELIEHCEMALENATS 484

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +    +   +   +   L  A++  E++L   P +     +IV  EAL +W  
Sbjct: 485 ADRLAYYNHARETNLIEEYQLGTLLSEAIKQDEIHLWLQPQVS-ASGDIVSFEALARWQL 543

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                +S   F+ IAE L ++  +   ++  +   +  W  +    P  + IN+A ++L+
Sbjct: 544 SNGQYVSPVVFIRIAESLGLLPKLAENLVRELVSLLAVWHQEHIKTP--VAINLAGQELM 601

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D+     + +L +   +    ++L  +E+  +         L  L + G S+ +DDFGT 
Sbjct: 602 DDTFFALIMSLSADYTWLSEMLELEITETSSVMTNPLIHKRLKTLSQYGFSIAIDDFGTG 661

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + L  L  IP + +K +   +      +    I++S I MA ++   ++A+ I  +   
Sbjct: 662 QASLGQLIDIPANILKIDRRFVAPLPSDKRHLDIVKSTIEMANSLNMKVVAEGIETKDQA 721

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
           + L  +GC  +Q  +   P       K
Sbjct: 722 ELLAALGCHTLQGYYFGKPTPVLEWTK 748


>gi|332187629|ref|ZP_08389365.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332012377|gb|EGI54446.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 847

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 184/426 (43%), Gaps = 19/426 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+ NR +F ++   ++           ++ +ID+D  K +ND LG A+GD +L
Sbjct: 396 AHTDFLTGLGNRAAFQEQAQALI-----GKGTPFSLFLIDVDYLKDVNDRLGHALGDTLL 450

Query: 593 VSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
             +   +   +       +AR+ G+ F I+   + +     + A  +        +  +R
Sbjct: 451 RHVGSALVRTIGAIPGIRIARIGGDEFAILCPGDLSMEA--ELADMLSDLQGEIWHPGDR 508

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--K 708
             T++ S G A +         +  NA+LA+Y  K  G      +         + I   
Sbjct: 509 NRTLSFSFGSARYPDDAQALDLLYHNADLALYTGKRLGRGRYVRYDPLQRSLRDLQITFA 568

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +D   A+   E  L   PI+ L DE + G EAL++W+HP+ G+++   F  +     +  
Sbjct: 569 DDAEDAIRRGEFALYLQPIVSLTDEIVCGHEALLRWNHPRHGHMTPDRFADVLVAERIGP 628

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I   +LE     +    ++       + +N  S  L      +G+   ++     P+R+
Sbjct: 629 LIQDHVLELALTLLRDHGERLG----VLSVNFTSAQLAGPRSAQGVIDRLAHHGIPPTRL 684

Query: 829 KLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            +  +E V++    +     L  L + G+++ LDDFGT  + L +L  +P D +K + S 
Sbjct: 685 CVEVTEGVMLDRAADSILGNLRTLHEAGVAIALDDFGTGYASLVHLRRLPVDRIKIDLSF 744

Query: 888 MTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           + G  +     +AI+ +I+ +   +   ++A+ I  E+   +L  +GC   Q      P 
Sbjct: 745 VAGIDQPDGGMLAIVHAIVGLGVGLGKVVVAEGIETEMQALQLRELGCHLGQGFLYGRPA 804

Query: 945 GFNSIL 950
              +I 
Sbjct: 805 PREAIE 810



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 83/331 (25%), Gaps = 16/331 (4%)

Query: 87  DWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDS 146
            W     +          ++V   R              R  +          R   +  
Sbjct: 57  TWLKLDASRLGSLPAHWNLLVDQTRFDRIAVLVVG----REGTTQLVRSAYNLRGYWAPG 112

Query: 147 DVFRITIN-PGAV----VTFIMEISTPNLPQIYLWEP-NFYKDTVNSFTLYRGIIIGVAS 200
            + +  I  PG            I   +L +  + EP +       ++ +  G+  G   
Sbjct: 113 GLLKFGIAQPGRDIRGLYLGYRWIDDLSLMRKVVAEPGSAIAHRDIAWLMLMGLFAGTLL 172

Query: 201 LLAIFLTIFYMVNR---SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACS 257
              ++  + +   R       +    +A +     +     L   +  P    L +    
Sbjct: 173 SAVLYNLVIHTGQRYAFQRWYLLWVVVALIYGLTWTNTAALLIPDLVGPLAVRLDFMLVG 232

Query: 258 EIALSSSLIIFLFMYLHWNRW--HAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
            +  + ++  F  +               +  +G+          +  P++T  +    +
Sbjct: 233 LMVAACNMFFFAVVEEGVLPHGLARVGRLLAAAGVVTGITAAADMWLPPVLTDRLLNYVI 292

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-NDIIQPALVGG 374
           A++VL           +G       +  W  +   F+            ND +       
Sbjct: 293 AAMVLVVAISCGIAVRRGSRVIWFYMLGWGPVIALFLARLARNFGFAPQNDAVDMGTFAA 352

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
           L    +++   +           +      E
Sbjct: 353 LAFEALILSLAIADRFRLIRRQLEVARQRRE 383


>gi|28900373|ref|NP_800028.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837395|ref|ZP_01990062.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|260362095|ref|ZP_05775091.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260877327|ref|ZP_05889682.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260898364|ref|ZP_05906860.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|28808684|dbj|BAC61861.1| GGDEF family protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149749310|gb|EDM60089.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|308085104|gb|EFO34799.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308090637|gb|EFO40332.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308113785|gb|EFO51325.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 606

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 200/456 (43%), Gaps = 22/456 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++E+  K L  +      DNLTG+ NR    D L T+   +         +  +DID +K
Sbjct: 162 VSERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFNLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLSSPNNAFRVAGDEFAFITYD----EDPVAVCQEV 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S E++ NA LA+   K      ++ +  
Sbjct: 274 LDKIEAGYSDKSNRISFTVSIGIARAPVHMLNSDELILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRVM--IKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E +         E+ ELY+V  PI+ + ++     E L +W+   +G
Sbjct: 334 HLSALYHRQTQLIEAMRIQLSTSITESHELYVVLQPIVDVNNDRWDYFEILARWNSSVYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E                 + + IN ++ +L+D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIELGERIIELACIAKQELEAHLGYT-VKLSINCSAHELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  L+ +  +  S   +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YINHLTTLLERYGHDASDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +      +    ++  I  +A+ ++  +IA+ +  +  + +L
Sbjct: 513 LNYIHNYPIDSIKIDATFVRNMLSNKTSEQVVYLIAQLAQLLDVDLIAEGVEDDRALNKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             MGC YIQ    + P   + ++ ++ +R   VK  
Sbjct: 573 IDMGCHYIQGYFYSRPHNVDELVHMINDRQ--VKRA 606


>gi|296170165|ref|ZP_06851762.1| cyclic diguanylate phosphodiesterase domain protein [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295895191|gb|EFG74906.1| cyclic diguanylate phosphodiesterase domain protein [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1122

 Score =  345 bits (884), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 104/451 (23%), Positives = 212/451 (47%), Gaps = 12/451 (2%)

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT-DDNLRPTVM 569
            R+     D++     L      A  D LT +PNR+S    LT +   +++        ++
Sbjct: 663  RFSVTFRDVS----LLAESHLQAMTDELTTLPNRRSLATALTELSASASSGRGQSHRALL 718

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ++++ K ++IN  +G   GD++L  +  R+   ++  D+LAR+S   F I+L   ++ + 
Sbjct: 719  LLNLHKLREINQSVGRHFGDELLWHIANRLVHSVRRDDLLARVSDEEFAILLGEGSDLVA 778

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-G 688
                A  + + + +P  L    + + A I  A +        E+L  AE  + HA     
Sbjct: 779  ARAQAGRLLEGMRIPFELDAISVKIDACIAIALYPDHCDHPQELLNRAEATIPHAMSALS 838

Query: 689  GNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
               V      + R     +  +L  A ++  +L + Y P +   D  +  +EAL++W HP
Sbjct: 839  RIAVYESGFETDRDHDPNLVGELRAALIDGDQLTVHYQPKVNATDGSVHSVEALLRWQHP 898

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
              G +   EF+  AE   +++ +    +      + SWRD+    P+ + +N+++ +LLD
Sbjct: 899  DRGLLLPEEFLPAAERAGLMRTVANRTINLTLEQVRSWRDEG--IPLTVAVNLSTTNLLD 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             +L   ++ L+      P  + +  +ES ++ + +RSR  +  L+ +G+ ++LDD+GT  
Sbjct: 957  LDLAVTIERLLRTHGLPPDALIVEITESALV-DSDRSRNTVAALQLLGVRISLDDYGTGW 1015

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S L+ L  +  D +K +   +       + +AI++S + +A+N+   ++A+ +  E+ + 
Sbjct: 1016 SSLARLQDVSVDELKLDRRFVARLAQDPRSVAIVQSTVDLAQNLGAELVAEGVEDEVTLT 1075

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L R GC   Q    + PL    + + +  R
Sbjct: 1076 ALRRYGCTITQGFVHSPPLPPEDLRRWVTAR 1106



 Score =  157 bits (398), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 501 PMSNSNGDILRYIGIANDI--TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           P+  + G ++  + +   +   E +  L  +   AF+D+LTG+ NR  FLDRL   +   
Sbjct: 122 PLLAALGILVAAVLVRQFVVLMENQSLLSEVAREAFRDSLTGLANRAYFLDRLEQAVAR- 180

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
            + D     V+ +D+D +K +ND LG   GD++LV +  R+   L    ++ARL G+ F 
Sbjct: 181 QSCDIAPIAVLCLDLDNFKAVNDALGHPAGDELLVRVAGRLTATLGDKCVIARLGGDEFA 240

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNA 677
           +++         A  A  +  +   PI +    I V  S+G+   T+S   +  ++L++A
Sbjct: 241 VVIEGPIEESHAA--AHRVLDAFHAPILVDGVPIPVRPSVGYTVATASSDCSVEQLLRHA 298

Query: 678 ELAMYHAKHRGGNHVESFRVS 698
           +LAMY AK  GG  V +F   
Sbjct: 299 DLAMYTAKREGGQCVRTFVPD 319


>gi|320158894|ref|YP_004191272.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319934206|gb|ADV89069.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 613

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 196/444 (44%), Gaps = 19/444 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +  +      DNLTG+ NR    D L T+   S        +++ IDID +K IND+ 
Sbjct: 174 QLVNQLSYEVSHDNLTGLLNRSCLSDTLETLTQQSDR----PFSLVCIDIDNFKLINDIH 229

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD ++      I   L  P +  R++G+ F  I  SE            +   IA 
Sbjct: 230 GTYIGDQIIKFTAHAIQSALPAPALAYRVAGDEFAFITYSETPEE----VCEHILNKIAF 285

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                   +    SIG A  +   ITS E+  NA LAM   K    N +  +        
Sbjct: 286 GYQDNANHVRFDISIGIAKASQRLITSDELFLNASLAMKECKKHPNNRIRCYDTHLSALY 345

Query: 704 RV--MIKEDLCL-----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                + E +         E +E+Y+   PI+ +        E L +WD  ++G+IS  E
Sbjct: 346 HRKTQLIEAIREQLAKPIDEATEIYVAIQPIVNVHKPRWDYFEVLARWDSAEYGSISPVE 405

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQ 815
           F+  AE+  +I  +   ++E   R   ++ +++    + + +N ++ +L D E     + 
Sbjct: 406 FIDAAEQSGLIVQLGERIIELACR-AKNYLEESLGYRVKLGVNCSAYELNDEERYLNYLN 464

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ K    P    +  +E+V++    +  ++L  LR  G  + LDDFGT  S L+Y+  
Sbjct: 465 KMMQKYHLDPRDFVIELTETVLLTQTGKEHMVLDALRDRGFKVALDDFGTGYSSLNYIHS 524

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P DT+K + S +      +    ++  I  +A  ++  ++A+ +  E+ +K+L  MGC+
Sbjct: 525 YPIDTIKIDASFIRNMLCNDTAERVVWLITQLALQLKVNLVAEGVEEELALKKLVDMGCE 584

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            IQ  + + P+  + I+  L  + 
Sbjct: 585 QIQGYYYSRPMKPSRIVDKLSAKQ 608


>gi|254431478|ref|ZP_05045181.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Cyanobium sp. PCC 7001]
 gi|197625931|gb|EDY38490.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Cyanobium sp. PCC 7001]
          Length = 835

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 106/432 (24%), Positives = 202/432 (46%), Gaps = 15/432 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D+LT +PNR+ F +RL  I    A   +    +M ID+DK+K IND  G  VGD  
Sbjct: 382 LALFDSLTDLPNRRYFFERL-AIESQRARRSDTPFVIMFIDVDKFKMINDTYGHHVGDAA 440

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILI--------SENNSLKIADFAIAMRKSIAM 643
           L+++   +  + +  D ++R  G+ F +I+          +N   +   FA+ + +    
Sbjct: 441 LIAVADHMRAVSRREDFISRYGGDEFALIMDLSAMEDRSEDNLKAQAYQFAVRLTERFQE 500

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS- 702
           PI +    + V+ S+G     S +    + ++ ++ AMY AK++    +  F VSS +  
Sbjct: 501 PIPIAGMNLPVSLSVGITLVDSQEADPQQAIQRSDAAMYQAKNQIDTRISIFDVSSNKHE 560

Query: 703 -DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            D   +  DL  A+   +L ++Y PII +    +  +EAL++W HP+ G+I     + IA
Sbjct: 561 LDSYRLFADLQTALHKHDLRILYQPIIDVHHG-LHAVEALVRWRHPELGDIPPDVLLNIA 619

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +   +   + L ++   AR   S R      P  + +NI+   L   ++ + +  L+   
Sbjct: 620 DHYRLTLPLGLELITLAARGYASLRASLGGDP-RLALNISGHLLSHPQMGQTILNLLDSQ 678

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
           L  P ++ L  +E  VM     +   L  LR  G+ L+LDDFGT  S L  L  +    +
Sbjct: 679 LVHPQKVTLEITEQSVMEMGRTTEENLQYLRASGMQLSLDDFGTGHSSLMRLITLQPSEL 738

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +T   +    + ++  +  +A+ +   ++A+ +  +   + LT++G  + Q  +
Sbjct: 739 KIDKAFVTPLQTDPNALRVVSLVATLARRMNLRVVAEGVETQEISEVLTKLGITHQQGFY 798

Query: 940 VASPLGFNSILK 951
            +       ++ 
Sbjct: 799 FSHARSSGDLIA 810


>gi|117923718|ref|YP_864335.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117607474|gb|ABK42929.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 863

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 187/441 (42%), Gaps = 15/441 (3%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +L  +G    I+   K    +   A +D LTG+ N +   + L T ++ +   ++ +  +
Sbjct: 421 LLNVVGSVKAIS---KYTRDLEFYATRDPLTGLYNHRILWELLRTEVERAHRHNH-QFAL 476

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D +K IND  G AVGDD+L++   +IG  L+  DIL R  G+ F I+L      +
Sbjct: 477 LLVDLDNFKTINDSHGHAVGDDLLIAFADQIGATLRQGDILGRHGGDEFVIMLPEVEEGV 536

Query: 629 KIADFAIAMRKSIAMPIN-LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             A     +  +  + +     + I ++ASIG A +     ++ ++   A+  M+ AK  
Sbjct: 537 PFAAAERILSATDKIRVQTHDGQSIGISASIGVAIFPDHANSAKDLFLFADNMMFKAKAE 596

Query: 688 GGNHVESFRVSSFRSDRVMI---KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           G +                I      +  A+E   +   Y PI      E+V  E L + 
Sbjct: 597 GKHRFTIPSEEDVVDAFKEIGEKSALVMRAIEEKWVQPFYQPIFDGHTGEVVAHEVLSRI 656

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P     S++EF+ IAE L ++  ++   +E+          +       + IN++ K 
Sbjct: 657 QVPDARLYSANEFIEIAERLGVVHKLDYVGMEKAFNQAGREGYEGL-----LFINMSPKA 711

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           ++ +E    ++ +I         I    +E   + N +   + +  L   G    +DDFG
Sbjct: 712 MVLSEFFPTVKKMIEAAGLQKQNIVFEITERDTVRNLKNLEIFIRNLHGEGYKFAIDDFG 771

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S   YL   P D +K  G  +       K +A +RS+  +A+++    + + +    
Sbjct: 772 SGFSSFHYLKRFPIDYLKIEGEFIAHMLDDVKDLAFVRSMAMLARDLGIATVGEFVESAA 831

Query: 923 DIKELTRMGCDYIQDSHVASP 943
             +E    G   +Q  H+  P
Sbjct: 832 IAQECRTSGVSLLQGYHLGRP 852


>gi|296135035|ref|YP_003642277.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795157|gb|ADG29947.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 799

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 198/451 (43%), Gaps = 21/451 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +     A +D+LTG+ NR++F+ +L+  L       +    V +ID+D++K +ND 
Sbjct: 192 RDEYKTYRTIAHRDDLTGLANRRAFMQKLSATLVK---HPHQALAVGMIDLDRFKIVNDR 248

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           LG +VGD +LV++ +R+  +L+  D+LARL G+ F ++     +  ++   A  + KS+ 
Sbjct: 249 LGHSVGDQLLVAVGQRLRSVLRQTDVLARLGGDEFVVMFTGYTSLDQLRAVADRLVKSME 308

Query: 643 MPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               +    + +  S+G      ++   +  +++ A+LAMY +K  G      F      
Sbjct: 309 QEFTVQSHALQIGLSLGIVIQQQAQPVDALTLMRRADLAMYASKEGGRQQYRFFDQHMED 368

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE------IVGLEALIQWDHPKWGNIS 753
              +       +  A+ ++ L L Y PI+ L          +   EAL++      G  +
Sbjct: 369 ALQEHDRKLNWVLDALHHNRLELHYQPILSLDGGTAAGVVGVHSAEALLRLRDAD-GVHT 427

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           +  F  + ++  +   +  F+L         W  Q     I + +NI+ +  LD +    
Sbjct: 428 AGAFESVLDDEQIGVPVGRFVLSAALDQAQRWHLQGRE--IQVNVNISPRHFLDPQFLSD 485

Query: 814 MQALISKT-LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           ++  + +     P R+ L  +E     +   +  ++ R R +G+ + LDDFGT  + L++
Sbjct: 486 LRTALERHPQCPPERLVLEVTEHGSELDSRMASFVVSRCRHLGVRVALDDFGTGSASLTH 545

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +   +VK + S       +   ++I   ++  A  +   ++A+ +        L  M
Sbjct: 546 LQQLEVSSVKIDRSFTRDLFTSGAGLSITYGLLRTAALMGLAVVAEGVSTPQHALALASM 605

Query: 931 GCDYIQDSHVASPLGFNSILKLL---KERFP 958
            C   Q   +A P+   ++   L   + + P
Sbjct: 606 SCRRFQGYAIARPMTAEAMDAWLTTWRSQLP 636


>gi|289548083|ref|YP_003473071.1| diguanylate cyclase/phosphodiesterase [Thermocrinis albus DSM
           14484]
 gi|289181700|gb|ADC88944.1| diguanylate cyclase/phosphodiesterase [Thermocrinis albus DSM
           14484]
          Length = 948

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 192/452 (42%), Gaps = 24/452 (5%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +   + +   I + +K+   +   +  D LT + NR SF   L           +   +
Sbjct: 505 QLFHVVRLMKAIEDLQKAQLSVKFLSQYDPLTALLNRVSFEKELQKA------TKHDIFS 558

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +++IDID  K IND  G + GD +L  +   +   ++  D + R+ G+ F I+L +    
Sbjct: 559 IILIDIDNLKVINDTYGFSAGDLLLNGMASVLRRSVRRWDTVGRVGGDEFAILLPN-TPK 617

Query: 628 LKIADFAIAMRKSI--AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                 A  +RK I              V+ S+   ++        EM+   ELAM   K
Sbjct: 618 KVAKIVAERIRKEIEAWGWEPQPGVVARVSVSMVILTYPEDADKPEEMIHIGELAMGKLK 677

Query: 686 HRGG--NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G     V              ++  L  A+E   +     PI+ L D +++G E L++
Sbjct: 678 REGKGGIWVLGEEERERLYVFYRMERILMQALEKDAVIPYLQPIVELKDMKVLGYEVLMR 737

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            +      +++ +F+ +AE+L ++  +++ ++E++      +      P +F  IN+   
Sbjct: 738 LEV-DGQILTAGQFVEVAEKLGVMPQLDVLLIEKVLE---GYHTLEGEPLLF--INL--- 788

Query: 804 DLLD--NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +L +   +  E + +L  K      R+ L  +E   +GN       +  LR  G S  +D
Sbjct: 789 ELRNATPKFTELLTSLCEKYRVPTHRVVLEITEREAVGNMISVVEFVNSLRSKGFSFAID 848

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S   YL +IP D +K +G  +  +  +      + +++ MAK +    +A+ + 
Sbjct: 849 DFGSGYSSFYYLKFIPVDYIKIDGEFVKSAVVSPVDRIFVEAVVNMAKRLGIKTLAEFVE 908

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E  ++ ++++G DY Q  ++  P       +
Sbjct: 909 NEEILRVMSQLGVDYGQGFYLGKPTPLTGFSQ 940


>gi|255100447|ref|ZP_05329424.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 744

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 102/428 (23%), Positives = 188/428 (43%), Gaps = 18/428 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+     +   +       N+   +M+++ID +K  ND+ G  VG+++L++LT+ +  
Sbjct: 41  PNREFMYQHIDDCISK-----NIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLH 95

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREIT--VTAS 657
            +     I+A L G  F I+L + +N       A  +  +  + I L  E+EI   VT S
Sbjct: 96  FIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESARELKIKLPNEKEIYSNVTFS 155

Query: 658 IGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MIKEDL 711
           IG   W      T+  +      A+  AK  G N    F                   ++
Sbjct: 156 IGSTIWNGEPNMTTLMLFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEI 215

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              ++  ++ + Y P+  + +  IVG EAL +W HP  G ++  +F+ + E+  +I  ++
Sbjct: 216 SHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELD 275

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E   ++I  W D  N   + I  N +     +      ++ +  K   S S   + 
Sbjct: 276 LHLFEENCKNIRRWID-NNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIE 334

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG 890
            +E++++ N       L  LR  G S+++DDFG+  S    L  +PFD +K +   +   
Sbjct: 335 ITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHN 394

Query: 891 STE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + K   IL SII +A+ +    + + +  E  ++ +  + CD  Q  + A P+     
Sbjct: 395 LNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEF 454

Query: 950 LKLLKERF 957
            KLL +  
Sbjct: 455 EKLLSKEN 462



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 417 IVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF-RTILDSFV 472
            +  +D+  D +      ++  I+G       G +  N    +H +D D   +  LD   
Sbjct: 632 GIIRYDLFGDMIITYMNEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMID 691

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +       +R    D Q   ++     +S  +G  +   G+  D+ + K   +
Sbjct: 692 TNKIEPFL--YRFIKRDGQIVTVMYTQCNLSAIDGRSI-AQGMYVDVNKIKNLTK 743


>gi|310829696|ref|YP_003962053.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Eubacterium limosum KIST612]
 gi|308741430|gb|ADO39090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
            [Eubacterium limosum KIST612]
          Length = 1038

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 99/465 (21%), Positives = 193/465 (41%), Gaps = 16/465 (3%)

Query: 493  HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             W   +   +    G     +   +DI+    ++       + D LTGI     F    T
Sbjct: 582  RWFNFQCHSLQWR-GAREAVLVAMDDISNFVDNIL------YVDKLTGISTFSRFELDTT 634

Query: 553  TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             I D    +      ++  DID+++ IN+  G ++G+ +L  ++  +   +   ++ AR+
Sbjct: 635  EIFDH---ETGKEYAMVTFDIDEFRYINEFHGYSMGNQLLRYISGGLVGAMSGAEVCARV 691

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            +G+ F  ++    +   +    + M   I   ++ +   I +   IG       +    +
Sbjct: 692  TGDVFVALVEW-TSEEALVMRIMQMVDGINKRLDYVIPGIRLNFQIGVYHAKEGERDIGK 750

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
            M+ NA++A    K      +  +  S          I+  +  A+ + E  +   P I L
Sbjct: 751  MMDNADIARKSIKGSRKTGIAFYDKSMGEKILKTRQIEARMERALRDKEFLVYLQPKIDL 810

Query: 731  MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
                +VG EAL +W   +   +   EF+ I E    I  ++ ++ E + +    +R    
Sbjct: 811  ESGRVVGAEALARWVDDRGNIVLPGEFIPIFESNGFIVELDFYVYEEVFK-AHYYRKTRG 869

Query: 791  MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
            +  + I +N++   L      E  +AL  K    P  I++  +E++ + N    + L+  
Sbjct: 870  LKCVPISMNMSRIHLKSGNYIERFRALADKYQIDPGLIEVEVTETIFIENSGYVKRLVSA 929

Query: 851  LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKN 908
            LR  G  +++DDFG+  S L+ L  I  D +K + SL      + K   IL++I  MAK 
Sbjct: 930  LRSDGFKVSIDDFGSGYSSLNLLSEIDVDVLKLDRSLCREENLSPKERVILKNIAAMAKE 989

Query: 909  IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            ++  ++A+ I      + L  + CD  Q    A P+  +   K L
Sbjct: 990  LDLQVLAEGIETTGQAEFLKSIQCDSAQGFLFAKPMPMDEFFKKL 1034



 Score =  192 bits (487), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 125/314 (39%), Gaps = 15/314 (4%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL----PY 455
           +    ER    +  +GDI++D+ I  DR+               ++              
Sbjct: 9   LEKKIERYGTILETTGDIIFDYHIDEDRMLFDEARLEKGRYVHYTLAVDRYTEALLLGNL 68

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD---NQFHWMIIRIRPMSNSNGDILRY 512
           +H +D +    +++              RV   D    ++HW ++R   + NS G +   
Sbjct: 69  VHPDDIEETIRLINGLTVQ-----AIVIRVTRPDETDGRYHWTLVRAATVQNSEGRVTET 123

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +GI  DI +QK+  + ++  +  D LTG+ +++    ++   L+  A ++  +  +M+ID
Sbjct: 124 VGIMRDIDDQKRREDRLVEESRCDQLTGLYDQKWTRIKIGEALE--ANNEMDKGILMLID 181

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID ++ +N+ LG   GD VLV    ++       D++ R+ G+ F +       +     
Sbjct: 182 IDGFRAVNENLGHIFGDAVLVETAEKLTAHAAPGDVIGRIGGDEFLVYSPGVAENQIAGR 241

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +R+          +   ++ S+G A+      T   +   A+ A+  AK  G +  
Sbjct: 242 VA-RIRRIFDHTFEGKSQAYRISCSLGVAACPKDGTTFETLFHCADQALSMAKMEGRDRW 300

Query: 693 ESFRVSSFRSDRVM 706
             +         + 
Sbjct: 301 CRYDEKMSGMSYLN 314


>gi|126700489|ref|YP_001089386.1| putative signaling protein [Clostridium difficile 630]
 gi|255102047|ref|ZP_05331024.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255307915|ref|ZP_05352086.1| putative signaling protein [Clostridium difficile ATCC 43255]
 gi|115251926|emb|CAJ69761.1| putative signaling protein [Clostridium difficile]
          Length = 759

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 195/439 (44%), Gaps = 14/439 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K+   ++  A+ D++T   ++  F      I+  S+++         I+I K+K IND 
Sbjct: 311 QKNRAQLIKIAYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLV---SINIQKFKLINDS 367

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  L  +   I   L+  ++L R+S ++F +++ +      I  +   +   I 
Sbjct: 368 FGSEAGDKTLKYIHDVISNYLEPGELLCRVSNDQFNVLIKTIPQKE-ILKYIENITNDIN 426

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 E +  +  SIG        +    +   A +A  + K   GNH     V     
Sbjct: 427 SFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTCVFYSDL 486

Query: 703 DRV------MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +R+       ++  +  A+ N+E  +   P I L D  IVG EAL++W  P  G I   E
Sbjct: 487 ERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKGLIPPDE 546

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E+   I  ++ ++ E++   I  W D     PI + +N +  +L + +  E  + 
Sbjct: 547 FIPFFEKNGFITKLDHYVFEKVCSMIRKWID-NGETPIPVSVNFSRANLNNIDFLEKYRM 605

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L +K       +++  +E++V  N ++   ++ ++ + G   +LDDFG+  S L+ L  I
Sbjct: 606 LRNKYNIPAKLLEIELTETLVFENLQKLINIIDQIHEEGFQCSLDDFGSGYSSLNMLKEI 665

Query: 877 PFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             DT+K + +  +      IA   ++ SI+ +AK +    I++ +   + +  L ++ CD
Sbjct: 666 KVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLKKINCD 725

Query: 934 YIQDSHVASPLGFNSILKL 952
            IQ    + PL      K+
Sbjct: 726 MIQGYVFSKPLPQEIFEKM 744


>gi|260902903|ref|ZP_05911298.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308107823|gb|EFO45363.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
          Length = 606

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 200/456 (43%), Gaps = 22/456 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++E+  K L  +      DNLTG+ NR    D L T+   +         +  +DID +K
Sbjct: 162 VSERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFNLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLSSPNNAFRVAGDEFAFITYD----EDPVAVCQEV 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S E++ NA LA+   K      ++ +  
Sbjct: 274 LDKIEAGYSDKSNRISFTVSIGIARAPVHMLNSDELILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRVM--IKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E +         E+ ELY+V  PI+ + ++     E L +W+   +G
Sbjct: 334 HLSALYHRQTQLIEAMRVRLSTSITESHELYVVLQPIVDVNNDRWDYFEILARWNSSVYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E                 + + IN ++ +L+D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIELGERIIELACIAKQELEAHLGYT-VKLSINCSAHELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  L+ +  +  S   +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YINHLTTLLERYGHDASDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +      +    ++  I  +A+ ++  +IA+ +  +  + +L
Sbjct: 513 LNYIHNYPIDSIKIDATFVRNMLSNKTSEQVVYLIAQLAQLLDVDLIAEGVEDDRALNKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             MGC YIQ    + P   + ++ ++ +R   VK  
Sbjct: 573 IDMGCHYIQGYFYSRPHNVDELVHMINDRQ--VKRA 606


>gi|126740930|ref|ZP_01756614.1| ammonium transporter [Roseobacter sp. SK209-2-6]
 gi|126718030|gb|EBA14748.1| ammonium transporter [Roseobacter sp. SK209-2-6]
          Length = 904

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 103/451 (22%), Positives = 198/451 (43%), Gaps = 19/451 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT-VMVIDIDKYKKI 579
              ++ +     A  D LTG+ NR    +     +     +  +    V+  D+D++K++
Sbjct: 462 AMCEAQQDSAWAARHDRLTGLGNRMHLEE-----IASDTVEGGMSGALVIAFDLDRFKEV 516

Query: 580 NDVLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND  G   GD VL     RI   L    D   R+ G+ F ++L S     +  +    + 
Sbjct: 517 NDTYGHEAGDLVLQESANRICKPLRNGQDFAFRIGGDEFVVLLDSTMPQEEAEELCNDIL 576

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  PI   + E+ V ASIGF++ + +  + S  L  A+LA+Y +K  G + V  +   
Sbjct: 577 FELLQPIKFKKTELRVGASIGFSTASPTA-SLSTALHQADLALYASKRDGRSCVNGYTEE 635

Query: 699 SFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +   ++ + +D  LA E +E+ ++  P I     E+ G EAL +W+HP  G +S   
Sbjct: 636 IGAAHEEKLNLIKDFKLAFERNEIEIMLQPQIDAKTRELTGCEALARWNHPIRGILSPDL 695

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDNELCEGMQ 815
           F  IA+EL ++ A++  +L++       W   +  +    I +N+++  L   +L E ++
Sbjct: 696 FTPIAQELNLLAALDRKILDQAL--YAYWVLAERGILLSNISVNVSAASLASPDLAERLE 753

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
               +     + +     E+V +    +     +  L+ +GI++ +DDFGT  + ++ + 
Sbjct: 754 Q---RVDLPKNGLAFELLETVFLDQVSDDYARKIQALKDLGITIEIDDFGTGHASIAAVL 810

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K             +R  ++R  I MA ++    + + I  E +   L  +G 
Sbjct: 811 ALQPDRLKIARVFAVDIDQKPERQNLMRGFIEMAASVGAETVIEGIETEAEADVLRDLGA 870

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           D +Q      P+   + L   + R     NT
Sbjct: 871 DVLQGYVFGRPMDLQAFLAWAETRQVSTGNT 901


>gi|328470330|gb|EGF41241.1| GGDEF family protein [Vibrio parahaemolyticus 10329]
          Length = 606

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 200/456 (43%), Gaps = 22/456 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++E+  K L  +      DNLTG+ NR    D L T+   +         +  +DID +K
Sbjct: 162 VSERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFNLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLSSPNNAFRVAGDEFAFITYD----EDPVAVCQEV 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S E++ NA LA+   K      ++ +  
Sbjct: 274 LDKIEAGYSDKSNRISFTVSIGIARAPVHMLNSDELILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRVM--IKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E +         E+ ELY+V  PI+ + ++     E L +W+   +G
Sbjct: 334 HLSALYHRQTQLIEAMRIQLSTSITESHELYVVLQPIVDVNNDRWDYFEILARWNSSVYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E                 + + IN ++ +L+D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIELGERIIELACIAKQELESHLGYT-VKLSINCSAHELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  L+ +  +  S   +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YINHLTTLLERYGHDASDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +      +    ++  I  +A+ ++  +IA+ +  +  + +L
Sbjct: 513 LNYIHNYPIDSIKIDATFVRNMLSNKTSEQVVYLIAQLAQLLDVDLIAEGVEDDRALNKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
             MGC YIQ    + P   + ++ ++ +R   VK  
Sbjct: 573 IDMGCHYIQGYFYSRPHNVDELVHMINDRQ--VKRA 606


>gi|225026589|ref|ZP_03715781.1| hypothetical protein EUBHAL_00839 [Eubacterium hallii DSM 3353]
 gi|224956081|gb|EEG37290.1| hypothetical protein EUBHAL_00839 [Eubacterium hallii DSM 3353]
          Length = 917

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 107/506 (21%), Positives = 202/506 (39%), Gaps = 32/506 (6%)

Query: 460 DRDNFRT--ILDSFVGYRRGRLQYEFRVR--AADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +R+ F+    L +     R   QY F +       +          +   +  +   +G 
Sbjct: 430 ERERFKKCVELSTIKEGLRKDKQYFFTIHETDKTGEVRLKRYSYIYI---DERVDIIVGA 486

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DITE           + +D LTG  NR+ F+     +L+     D  +  V+  ++  
Sbjct: 487 REDITE----------FSEKDVLTGGYNRRGFIRITERLLNEVP--DRTKYAVLFFNVKN 534

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K +N++ G+  GD VL ++ R +      P I AR+  + F  ++ ++N   +      
Sbjct: 535 FKAVNELFGVESGDVVLQNIFRTLTHSKLSPVITARVESDHFVCLVENKNLDFE------ 588

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +            + + +    G        +  S M+  A+LA  +           +
Sbjct: 589 ELTSVCDNKFVKDGKCMNLIIRCGIFYVEEKPMKISGMIDRAKLAKRYITDEYVQPYMVY 648

Query: 696 RVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             S   +      +  +L   +   +  + Y P+I     +I   EALI+W HP  G IS
Sbjct: 649 DHSMQVAYIDKAKLAGELQEGIAKEQFKVYYQPVIDTKTGKIASAEALIRWIHPDKGFIS 708

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+   EE   I  ++ ++L+++ + I   R + N   + I +N++  D  D  + E 
Sbjct: 709 PALFIPALEENGHISELDFYVLKKVWQFIND-RCENNKFVVPISVNLSWMDFYDEIMMEK 767

Query: 814 MQALISKTLYSP--SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           +   + +   +      +   +E+      E    +L  LR     + LDDFG+  S   
Sbjct: 768 ILKEMDRFRENGREHMARFEITETSYAAIRENRSGILESLRIKNAKILLDDFGSGFSSFG 827

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L    FD +K + S +       K  +I+ SII MA  I    +A+ +  E  +  L +
Sbjct: 828 MLQDYDFDILKIDMSFIRKIGENPKTKSIVHSIIGMAHEIGIKTVAEGVETEEQVSFLRQ 887

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
            GCDYIQ  + + PL     ++ L++
Sbjct: 888 SGCDYIQGYYYSKPLPEEEFVEFLEK 913


>gi|225850131|ref|YP_002730365.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225645985|gb|ACO04171.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 636

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 186/427 (43%), Gaps = 19/427 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ DNLT   NR    D       +++  +     V +ID+D +KKIND  G  VGD
Sbjct: 222 RKKAYIDNLTKTYNRNYLED-------MASLLNPASYHVALIDLDDFKKINDTYGHDVGD 274

Query: 590 DVLVSLTRRIGELLK-FPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMP-IN 646
            VL  +   I   ++   DI+ R  G  F +++     +     + A  + + I    I+
Sbjct: 275 LVLKKIAETIKSSVRKDEDIVIRYGGEEFLVLIKAGRKDKKASINAAERLLRDIRNRKID 334

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +   EI+VTASIG   +T    +  + +K +++A+Y AK  G N +E +          +
Sbjct: 335 INGEEISVTASIGLNIYTERSHSIYDAIKKSDIALYQAKANGKNRIEIYSEKRADQSGYI 394

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              ++   +E       Y PI+ L   +    EAL+++       I  ++F+ + E   +
Sbjct: 395 TIGEIQRFLEEKRFICHYQPIVDLHTNKTSHFEALVRFIDEDGNIIYPNKFIPVIENTFL 454

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              +   ++E       +         + I IN++  DL  + + + ++ +  +   S  
Sbjct: 455 YSRLTKSVIE------YNRNILKKHKDLKISINLSPSDLFTDAIIKLLEEVAVQDKLS-D 507

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ L   E+  + + E+ +  L RL+  G  + +DDFG+  S   YL  +  D +K + +
Sbjct: 508 RLILEIIENESITSYEKMQNALLRLKSFGYKIGIDDFGSGYSNFIYLITLDVDFLKIDAN 567

Query: 887 LMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           ++    + R    +  +I    K  +   IA+ +  E   + +  +G DY Q  + + P+
Sbjct: 568 IIKSIHKDRISYIVTETINNFCKKTDIKTIAEYVENEDIYRMVKSLGIDYGQGYYFSRPV 627

Query: 945 GFNSILK 951
               ILK
Sbjct: 628 PLEEILK 634


>gi|260777131|ref|ZP_05886025.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606797|gb|EEX33071.1| GGDEF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 619

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 102/482 (21%), Positives = 206/482 (42%), Gaps = 33/482 (6%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQ----KKSLEGILCNAF---- 534
           +R        +++     P+  S  +++ Y  +  ++       K               
Sbjct: 120 LRTRSGDVLGILLSAFRTPIEQSE-ELIYYHTLFANVVVHSLRAKWLSARSESLVNQLSY 178

Query: 535 ---QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               DNLTG+ NR    D+L  +    +       T+  +DID +K IND+ G  +GD V
Sbjct: 179 EVSHDNLTGLLNRSFLSDKLERL----SETSGDSFTLAYVDIDSFKSINDLYGNYIGDQV 234

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           +  + + I   ++   +  R++G+ F  I  + +           +   +          
Sbjct: 235 IKFVAKAIETSIQDRQLAFRIAGDEFAFITYNRDPLE----VCRLILHKLESGYKDPAHN 290

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----- 706
           I V  SIG A  + +++T+ +++ NA LA+   K    + V+ +                
Sbjct: 291 IKVNVSIGIARKSDNRLTADQLILNASLALKDCKQSRNSQVQCYDTHLSAQYYRRTMVID 350

Query: 707 -IKEDLCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            ++ +L  +  N SE+Y++  PI+R   E     E L +W+    G IS  EF+  AE+ 
Sbjct: 351 ALRNELSPSNLNPSEIYVLAQPIVRRNQEHWDYFEILARWESSALGMISPLEFIEAAEQS 410

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQALISKTLY 823
            +I  +   +++          +Q     + + IN ++ +L D     + + + I +  +
Sbjct: 411 GLIVELGERIVDLAC-QAKQELEQGLGYKVKLGINCSAHELNDTNRYLKHLTSTIHRYGF 469

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P+   +  +E+V++      R +L +LR +G ++ LDDFGT  S L+Y+   P D +K 
Sbjct: 470 KPNEFTIELTETVLLSQTNEIRFILDQLRLLGFTVALDDFGTGYSSLNYIHSYPIDCIKI 529

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + + +      E    ++  II +AK ++  ++A+ +  +  +++L  M C  IQ    +
Sbjct: 530 DATFIRNMLCNETSERVVWLIIQLAKQLKVDLVAEGVESQEALEKLHEMDCYQIQGYFYS 589

Query: 942 SP 943
            P
Sbjct: 590 RP 591


>gi|83591998|ref|YP_425750.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
 gi|83574912|gb|ABC21463.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodospirillum rubrum ATCC
           11170]
          Length = 766

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 103/436 (23%), Positives = 183/436 (41%), Gaps = 13/436 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E I   AF D  TG+PN  +    +   L            V    ++ +  I+D LG
Sbjct: 318 LFEQISLQAFHDEATGLPNLAACQSLIDQYLQRRQ-----PVAVTFFSLEGFSAISDTLG 372

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +GD ++  L       L+    + R+       ++    +  ++   A  +       
Sbjct: 373 RVIGDRMIGLLANAFRHRLQERGEVFRVGQETLATVIGGPVD--QVGPLADQLAGDFRAG 430

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           + L    + V+ S G +  TS   T+  +++ A +AM  A++       ++ V+     R
Sbjct: 431 LPLDSMTLPVSFSHGTSVSTSEHDTAQILVQRAGIAMQKARNIKRGGGLTYAVAMEEEIR 490

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             I     L   V +     V+ P IRL D    G EAL++W       I+ S F+  AE
Sbjct: 491 AHIGVISKLGAGVVSEAFVAVFQPKIRLADRSCHGGEALVRWRDGDGTMIAPSLFIPAAE 550

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  I   +  +    I S   + +     I +N++ + + + +L + + ++ ++  
Sbjct: 551 TSGHIVDIGYSVFRQSCAMIRSL--KVSQDDARIAVNLSVRQMREPDLIDKLVSIAAEEG 608

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            + +R+KL  +ES+V+ +   +  LL  L+  G  L LDDFGT  S LSYL  +P DT+K
Sbjct: 609 VATTRLKLEITESIVIDDLTHTVSLLKALKDKGFLLALDDFGTGYSSLSYLRSLPIDTLK 668

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S ++G  E      I+  II +   +   I A+ +  E + + +T MGC   Q    
Sbjct: 669 IDRSFVSGLAEQADMRKIVGLIIGLGHELGFDITAEGVETEEEARIVTEMGCFTAQGYLF 728

Query: 941 ASPLGFNSILKLLKER 956
           + PL     L   +  
Sbjct: 729 SKPLSAEDFLVFARTH 744


>gi|78047381|ref|YP_363556.1| putative phosphodiesterase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035811|emb|CAJ23502.1| putative phosphodiesterase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 666

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 199/480 (41%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  I   P    +   +  +    D+   +          ++D  TG+P
Sbjct: 174 LKLRDGHSIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTT--YRDGPTGLP 231

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + L T L  S  D     T + ID+   D ++ +   LG    D  +    RR+
Sbjct: 232 NRARFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRL 289

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +L RL    FG +  +E    ++A     + K+   P+       T  ASIG
Sbjct: 290 AAYLPGGTLLYRLDPTTFGFLAQAEG--QRLATLCTKVAKAFTEPLEHQGIPHTAVASIG 347

Query: 660 FASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             S      +  T   +  + ++A            E     + R+   ++         
Sbjct: 348 AVSLQSSYGAADTIRSLTTSVDIARERCLPWS--LYERKHDVAQRNTFRLLAALPAALDS 405

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            S+L L + P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 406 ASQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVID 465

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES 
Sbjct: 466 NGIAQAARWQQQGLD--FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESA 523

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +P+     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +    +   
Sbjct: 524 MIRHPDHLAEQLATIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRT 583

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 584 DRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLE 643


>gi|94499851|ref|ZP_01306387.1| response regulator/GGDEF domain/EAL domain protein [Oceanobacter
           sp. RED65]
 gi|94428052|gb|EAT13026.1| response regulator/GGDEF domain/EAL domain protein [Oceanobacter
           sp. RED65]
          Length = 497

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 202/436 (46%), Gaps = 9/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S++        D LTG+ N   F  +L     ++         V+ +DID +  +N  L
Sbjct: 65  RSVQTSELLNQFDPLTGLLNHHMFSAQLER--KVAMRKPEQTLVVIYLDIDHFSHLNRAL 122

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    + +L+ L+R + +      +L R   ++F I  +S+ +  +I      +R+    
Sbjct: 123 GFNEANQILMGLSRALKDHYSAHVLLGRFPPDQFAIAFLSDKSMGEIEAGIKGLRQMFDQ 182

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +   E+++ VT ++G A   S    +  ++  A  A+ HAK R  N V+ F       +
Sbjct: 183 YMY--EQQVEVTCTLGVAMGPSDSRQAKGLMAAASDALGHAKTRERNSVQFFNKQLSELE 240

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +  DL   +  + L +VY P  RL D+ +VG+EALI+W+H + G IS   F+ +A
Sbjct: 241 NQRQKLLGDLRQDLAANRLNMVYQPQYRLADQTLVGVEALIRWEHAEHGFISPDVFIPLA 300

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +   I+ F++ ++ +D+  +R     P   + INI++ +     + + +   I   
Sbjct: 301 EDNSIANEISRFVVHQVYQDLQQYR-LLGNPIERVSINISAVEFNSRMMLDALLMEIESL 359

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 +++  +E+  + N E+S   +  L+  G+  ++DDFGT  + L+ L  +P D V
Sbjct: 360 PNLKQWLQIEITETATLNNLEKSAANIKALKAEGLRFSVDDFGTGYTSLAMLKDLPIDEV 419

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       K  AI+ +I+ M      +I+A+ I  +  +  L  MGC   Q   
Sbjct: 420 KIDRSFIKAMVHETKAKAIVEAIVGMTHGFGISIVAEGIENKEQLDLLKVMGCSEGQGYF 479

Query: 940 VASPLGFNSILKLLKE 955
           +A PL    +   ++ 
Sbjct: 480 LAKPLNVKQLAATVRS 495


>gi|255306388|ref|ZP_05350559.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 744

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 187/428 (43%), Gaps = 18/428 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+     +   +       N+   +M+++ID +K  ND+ G  VG+++L++LT+ +  
Sbjct: 41  PNREFMYQHIDDCISK-----NIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLH 95

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREIT--VTAS 657
            +     I+A L G  F I+L + +N       A  +  +  + I L  E+EI   VT S
Sbjct: 96  FIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESARELKIRLPNEKEIYSNVTFS 155

Query: 658 IGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MIKEDL 711
           IG   W       +  +      A+  AK  G N    F                   ++
Sbjct: 156 IGSTIWNGEPNMNTLMLFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEI 215

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              ++  ++ + Y P+  + +  IVG EAL +W HP  G ++  +F+ + E+  +I  ++
Sbjct: 216 SHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELD 275

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E   ++I  W D  N   + I  N +     +      ++ +  K   S S   + 
Sbjct: 276 LHLFEENCKNIRRWID-NNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIE 334

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG 890
            +E++++ N       L  LR  G S+++DDFG+  S    L  +PFD +K +   +   
Sbjct: 335 ITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHN 394

Query: 891 STE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + K   IL SII +A+ +    + + +  E  ++ +  + CD  Q  + A P+     
Sbjct: 395 LNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEF 454

Query: 950 LKLLKERF 957
            KLL +  
Sbjct: 455 EKLLSKEN 462



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 417 IVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF-RTILDSFV 472
            +  +D+  D +      ++  I+G       G +  N    +H +D D   +  LD   
Sbjct: 632 GIIRYDLFGDMIITYMNEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMID 691

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +       +R    + Q   ++     +S  +G  +   G+  D+ + K   +
Sbjct: 692 TNKIEPFL--YRFIKRNGQIVTVMYTQCNLSAIDGRSI-AQGMYVDVNKIKNLTK 743


>gi|27367017|ref|NP_762544.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27358585|gb|AAO07534.1| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 613

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 196/444 (44%), Gaps = 19/444 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +  +      DNLTG+ NR    D L T+   S        +++ IDID +K IND+ 
Sbjct: 174 QLVNQLSYEVSHDNLTGLLNRSCLSDTLETLTQQSDR----PFSLVCIDIDNFKLINDIH 229

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD ++      I   L  P +  R++G+ F  I  SE            +   IA 
Sbjct: 230 GTYIGDQIIKFTAHAIQSALPTPALAYRVAGDEFAFITYSETPEE----VCEHILNKIAF 285

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                   +    SIG A  +   ITS E+  NA LAM   K    N +  +        
Sbjct: 286 GYQDNANHVRFDISIGIAKASQRLITSDELFLNASLAMKECKKHPNNRIRCYDTHLSALY 345

Query: 704 RV--MIKEDLCL-----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                + E +         E +E+Y+   PI+ +        E L +WD  ++G+IS  E
Sbjct: 346 HRKTQLIEAIREQLAKPIDEVTEIYVAIQPIVNVHKPRWDYFEVLARWDSAEYGSISPVE 405

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQ 815
           F+  AE+  +I  +   ++E   R   ++ +++    + + +N ++ +L D E     + 
Sbjct: 406 FIDAAEQSGLIVQLGERIIELACR-AKNYLEESLGYRVKLGVNCSAYELNDEERYLNYLN 464

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ K    P    +  +E+V++    +  ++L  LR  G  + LDDFGT  S L+Y+  
Sbjct: 465 KMMQKYHLDPRDFVIELTETVLLTQTGKEHMVLDALRDRGFKVALDDFGTGYSSLNYIHS 524

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            P DT+K + S +      +    ++  I  +A  ++  ++A+ +  E+ +K+L  MGC+
Sbjct: 525 YPIDTIKIDASFIRNMLCNDTAERVVWLITQLALQLKVNLVAEGVEEELALKKLVDMGCE 584

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
            IQ  + + P+  + I+  L  + 
Sbjct: 585 QIQGYYYSRPMKPSRIVDKLSAKQ 608


>gi|307718178|ref|YP_003873710.1| hypothetical protein STHERM_c04650 [Spirochaeta thermophila DSM
           6192]
 gi|306531903|gb|ADN01437.1| hypothetical protein STHERM_c04650 [Spirochaeta thermophila DSM
           6192]
          Length = 519

 Score =  344 bits (882), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 123/555 (22%), Positives = 229/555 (41%), Gaps = 64/555 (11%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E  S  +      V   D     +      + + G    S    IR +L  +   DR   
Sbjct: 4   ELFSEVLSSLPMEVAITDEGGRILWANEAFSLLTGYGRTSSSMLIRQFL-LMFAEDRPEV 62

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                 FV    G+L    R+        W     + +                 + ++ 
Sbjct: 63  ------FVKGADGQLSL--RILT-----RWSFHDGKKVVW---------------SFERL 94

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +     + +D+LTG+  R+ F     ++L  +   +     +MVID+D +K+IND+ G
Sbjct: 95  VADPKGVLSSRDSLTGLLGREWFFREAGSLLAGA-RFEGTSFVLMVIDLDGFKRINDLYG 153

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD+VL  + RRI   L+  D+++R   + F ++L    +   I   A  +  SI   
Sbjct: 154 PEVGDEVLRIVARRITGHLRAEDMVSRTGSDEFAVLLRDVADPAGI---ARRVLASIRER 210

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSD 703
           + +    ++++ASIG   +    ++  E++  A+ A+  AK HR      +  V      
Sbjct: 211 MVVGGHALSLSASIGAGVFPRDGLSLEELVAAADAALLTAKAHRDTVWFCTPEVRRRIMH 270

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R  ++  +   V    ++L Y PI+R+    + G+EAL +        +   EF+ I EE
Sbjct: 271 RWDMERQVLDQVREGRIHLFYQPIVRVTSGMLAGVEALSRLRGEDGALVLPEEFVPILEE 330

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   +L         W+ +     +F+ +NI+ ++ L  E  + ++ ++  + +
Sbjct: 331 GKVIHLLGRKVLALAVLQGELWKARG----LFVSVNISPQEFLHPEFVDVVREVLDASGF 386

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + L  +ES ++G+ +R+  +L  LR  GI + +DDFGT  S  + L  +P D +K 
Sbjct: 387 PPELLMLEVTESSLVGDVDRTVQVLSALRDEGIRVAVDDFGTGYSSFASLKRMPVDVIKL 446

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAK------------NIETTIIAKDIYGEIDIKELTR 929
           +   + G   +E+  AIL  +  MA                          E  ++ L  
Sbjct: 447 DRRFLHGVEESERDRAILEGMTHMAHGLGLEVVVEGVER------------EAQLEILRE 494

Query: 930 MGCDYIQDSHVASPL 944
            GCDY+Q   +  P+
Sbjct: 495 SGCDYVQGFLLGHPM 509


>gi|160880966|ref|YP_001559934.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
 gi|160429632|gb|ABX43195.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
          Length = 613

 Score =  344 bits (882), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 184/434 (42%), Gaps = 9/434 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +++ + I      D +TG+     +   L     +   D N +  +   DI  +K  N+ 
Sbjct: 180 QEAQKRIEQVTLFDPVTGLM---KYDSFLEQAELIYKNDSNNQYIMFYADITNFKYFNET 236

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG--IILISENNSLKIADFAIAMRKS 640
            G A GD+VL    +    L     I  R+  + F    +L       K+      +  S
Sbjct: 237 YGYAAGDEVLRLFKQHFLSLSSSYIIGCRIFSDYFIGMTVLKEPLVERKLIQEIQMINYS 296

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSS 699
               I  +  E ++    G     +  +     + NA  A   AK+      + +  + +
Sbjct: 297 FQKKIQSIYPESSIHIVSGVVLIDNKNLDIQTYIDNANQARKIAKYNRTICVIFNKDMEA 356

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            R     I      A++N E Y    P I L  ++ VG EAL++W       +  +EF+ 
Sbjct: 357 ERKKYYRITSIAEEALKNDEFYFELQPKIDLKTKKTVGAEALVRWSRQDGTVVYPNEFVP 416

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+   I  ++ ++ +++   +   R       + I +N++   L  +   + +  L+ 
Sbjct: 417 IFEQNGFITKLDFYVYDKVCEYL-LHRISHGKEVVPISVNVSRAHLKQDNFAKKVIRLVE 475

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +P  ++   +E++ + N E+++  L  L+  G  +++DDFG+  S L+ L  + FD
Sbjct: 476 QHRIAPEYLEFELTENIFLENSEQAKETLIELKNYGFKVSMDDFGSGYSSLNLLMNLEFD 535

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +T    ++K   +++SII MAK +  T++ + +  +  +  L R+ CD +Q 
Sbjct: 536 ILKLDKDFLTDNIISKKEEVVIKSIIRMAKLMNMTVLCEGVETKEQVDFLERIQCDMVQG 595

Query: 938 SHVASPLGFNSILK 951
            +   P+   +  +
Sbjct: 596 YYFGRPMKTEAFEE 609


>gi|295092226|emb|CBK78333.1| FOG: EAL domain [Clostridium cf. saccharolyticum K10]
          Length = 669

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 115/543 (21%), Positives = 219/543 (40%), Gaps = 29/543 (5%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+  D+  D    +  +   LGL+S  +H   R   P+++  DR+N++  L S +  RR 
Sbjct: 148 VFFGDVQEDVYYVSDKLREELGLSSNLVHQLFRQAEPFVYEKDRENYKRGLLSVMEERRE 207

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                 R +  D +  WM        + +   L + G   D+ ++  +          D+
Sbjct: 208 FYSQRLRFQGMDKRIRWMCCWGIIKWDGD-RPLFFSGCMTDLEDEFSA----------DS 256

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +TG     + + RLT +     +++  + TV  I + ++  IND LG    D +L  +  
Sbjct: 257 VTGFLRYPAAVRRLTAL-----SEEKEQATVFGIGLSRFSVINDSLGRMEADRLLRQICA 311

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++ E L     L R+ G RF  +   +   ++I+     +R+ I         E+    +
Sbjct: 312 QLRERLY-GFELYRMDGVRFLAVCPGQVPDVRISGI---IRQCIQECYRKKGIEMKNPCA 367

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
           +G         +  E+++     +Y+AK      V  F        +   +  L L    
Sbjct: 368 LGMLRCPEDGRSGMELIERVMTCIYYAKRNPEQGVLRFSWDMLEKRQKEAEMSLELCRNV 427

Query: 718 SE----LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            +      +V  PI+      I G E L +W+  +   +S   F+++ EE   I A   +
Sbjct: 428 RDQFKGFRVVIQPIVEGETGRIKGGEILSRWE-CRGTAVSPECFIMLMEENKQILAFGKW 486

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E+      S+  +   P   +  N++   + D+     M+  +S+   S   + L  +
Sbjct: 487 VFEQAVLACRSFMKE--RPDFTVSFNVSYLQITDSSFLPFMKETLSRYGVSGKNLILELT 544

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+     PE    L+   R +G+ L LDDFG   S L  L   P D VK +  +M    +
Sbjct: 545 ETHFDEAPEHLERLVKECRAMGMKLALDDFGKGYSNLQMLLRYPVDLVKLDREIMREIAQ 604

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            R    +++SI+      +  +  + +  E ++  + RM  DY+Q  +   PL    +L 
Sbjct: 605 SRTSRELVKSIVLACHRADKKVCVEGVETETELGIVKRMKVDYVQGYYFYRPLNTQELLT 664

Query: 952 LLK 954
            + 
Sbjct: 665 KIS 667


>gi|330898879|gb|EGH30298.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 663

 Score =  343 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 184/415 (44%), Gaps = 12/415 (2%)

Query: 399 GIFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLP 454
                 E+  LA      + + V   +  +           I G +     G   R    
Sbjct: 254 ESRQMQEKLHLAATVFESTAEGVLITNTDQSISAVNRAFTEITGYSESEAIGQTPRLLAS 313

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D   +  +         G  Q E   R  + + +   + I  + N +  +  ++ 
Sbjct: 314 GQH--DSAFYAAMWHQLTAE--GHWQGEISNRRKNGELYPSWLTISAVRNKDDLLTHFVA 369

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI+  K +   +   A  D LTG+PNR  F  RL   L  S    +L   V+ +D+D
Sbjct: 370 VFADISSLKHAQARLDYQAHHDPLTGLPNRILFESRLQAALLHSEESGSL-GAVLFLDLD 428

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG  VGD +L  +  R+ E L+  D +ARL G+ F ++L     +      A
Sbjct: 429 RFKHINDSLGHPVGDLLLKGIAHRLKETLRDIDTVARLGGDEFIVLLPGLLQASDAQAIA 488

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +      P    E E+ ++ SIG   + +     + ++KNA+ AMY +K +G N VES
Sbjct: 489 NKLLACFNTPFEAGEHELYISPSIGSCVFPTDGTDVATLVKNADAAMYRSKAKGRNRVES 548

Query: 695 FRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +        S+R+ ++++L  A+E ++L L Y P I L    + G EALI+W+HP +G +
Sbjct: 549 YTCDLSEQASERIALEQELRRALERNQLTLAYQPKINLTTHTLAGAEALIRWNHPTFGEV 608

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               F+ +AEE  MI  I  ++LE+  R +  WR     P   + +N+A   L  
Sbjct: 609 PPEHFIPLAEENGMILQIGDWVLEQACRQMGVWRK-TCQPFGPLSVNLAGAQLRQ 662



 Score = 51.9 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 47/155 (30%), Gaps = 12/155 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLAS 442
             +++ +       Q +    E+ + A   S D +          +          G + 
Sbjct: 121 LVIVRDITQLKLARQQLQLSEEKFAKAFHASPDGMAITRQQDGMLLEVNEGFCRQTGYSE 180

Query: 443 G-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +     +   ++ +++R      +      +        R+R  +       +  +P
Sbjct: 181 KYCLDHSTFDLGIWVDLSERSRLIERMKKHGFVK----DMRVRIRHNNGDIRLCELSSQP 236

Query: 502 --MSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             ++  +      + I  DITE ++  E +   A 
Sbjct: 237 LIIAGED----CLLTITRDITESRQMQEKLHLAAT 267



 Score = 39.2 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 34/147 (23%), Gaps = 15/147 (10%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +       + +       D +    +     +          GL    + G     L  
Sbjct: 10  REASCLSEGKFASIFAQCPDAMLIVSLADGHIMDANEAFVERTGLPLDEVIGKTPTELNL 69

Query: 456 -IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
                        L             E   R  + +    +I  +P    +  I   + 
Sbjct: 70  WAVPGIGPKVLLQL-----QTDDIHNLEIPFRRKNGETFSGLISAQPF--EHSPIPAVLV 122

Query: 515 IANDITEQK------KSLEGILCNAFQ 535
           I  DIT+ K      +  E     AF 
Sbjct: 123 IVRDITQLKLARQQLQLSEEKFAKAFH 149


>gi|260437455|ref|ZP_05791271.1| putative sensory box sensor/GGDEF/EAL domain protein [Butyrivibrio
           crossotus DSM 2876]
 gi|292810087|gb|EFF69292.1| putative sensory box sensor/GGDEF/EAL domain protein [Butyrivibrio
           crossotus DSM 2876]
          Length = 683

 Score =  343 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 100/420 (23%), Positives = 184/420 (43%), Gaps = 17/420 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTGI + + F+D    +L     + N    + V DI ++K IND+ G+  GD +L  +
Sbjct: 2   DKLTGISSFRGFIDETDKLLAD---NPNDNFDIFVWDIVQFKVINDLYGMEAGDWLLKEI 58

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I   +       R+  ++F   + + +      +     R+           E  + 
Sbjct: 59  AAEIKAKVTRG-TCGRIGNDKFVCCVFANDKLYSFKNNVYVFRR--------EGVEHRIL 109

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
              G     S  +   +M   A LA+   K +    V  +  S          +  D   
Sbjct: 110 IQGGCYQIRSRDVPVIKMCDRAILALNSIKGKYTEAVAIYNNSEREDIIMGQRLAADFDN 169

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++  +  +   PI       + G E L++W+HP  G +S   F+   E+  +I  ++ F
Sbjct: 170 ALKERQFKVYIQPIYYADSNVMAGGEVLVRWEHPTLGFLSPGRFIRYFEQNYLITRLDKF 229

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E   R +   +++     I + INI+  D L + L + +  L++K   +P ++++  +
Sbjct: 230 VWEEACRILKRMKEEGKTV-IPLSINISRADFLFDNLYDVLVGLVTKYDVAPDKLRIEIT 288

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           ES  + NP + +  + RL + G S+ +DDFGT  S L+ L  +PF  +K + +L+     
Sbjct: 289 ESAYIDNPVKIKDTIDRLCEYGFSIHIDDFGTGYSSLNTLKELPFGILKIDKTLIDEIDG 348

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            EK   ++ +II MAK +   +IA+ +     +  L  MGC YIQ  + + P+      K
Sbjct: 349 SEKAANVVSTIINMAKLLGMDVIAEGVENVKQLNFLKHMGCKYIQGFYFSKPVCEEEFFK 408


>gi|326794854|ref|YP_004312674.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326545618|gb|ADZ90838.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 755

 Score =  343 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 119/730 (16%), Positives = 262/730 (35%), Gaps = 38/730 (5%)

Query: 238 FLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL-HWNRWHAKVGYITFSGIACIAIL 296
           F   +    S +  ++   +E    + L    F  L            +   G   +   
Sbjct: 35  FTLVVFAGLSIQSWLYCDMNESLCYAVLSTLSFGVLCALLYLSCTKTKLAAGGFCLLLFG 94

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
             + F +        +  + S+        ++   +    A LL    +L  I  +   +
Sbjct: 95  IGLFFLFEESEVVAFKFGIVSLYSLPLIIRLFFSFRHALVASLLNIGTLLYSINLLNDNL 154

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVL 412
                    ++   + G L + + L    V+  +       Q ++    R          
Sbjct: 155 VSLPFQVAILLNILVFGLLNVALPLAVSRVLYALEINAQHMQKMYHRLNRNNLLYEEIFE 214

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLA-SGSMHGPIRN-WLPYIHINDRDNFRTILDS 470
            +G      D     +        +L       + G   N WL  I     D+       
Sbjct: 215 HTGTPTLLCDKRGRILRLNNQAGELLSAKNKKRLEGSSINKWLEPIS----DSVNRFFWQ 270

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                         +  +D       + I    +   +   Y+    + T  K   + + 
Sbjct: 271 S--------NATECLLKSD-----SKMSIEVHRSQLTNHGHYVLHLQNTTHLKALTQELE 317

Query: 531 -------CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    +  D LT +PN   F   +   L   +  ++    +++I I ++K +N   
Sbjct: 318 STQLTNSRLSQLDLLTRLPNHFYFSKLVNERLK--SQSNHFTGAMVIIKISQFKLLNKQY 375

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    + ++++  + +   L    ILARL G +F   L      L   + +  +  ++  
Sbjct: 376 GKDKSNRIILNFAKSLQSRLSDQTILARLRGVKFACFLPLGQTYLIQRNLSTLINSALPS 435

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + +   ++ +   +G     + + T+ ++L++ E+A+ ++            +     +
Sbjct: 436 QLRIDGHQLNMDYQVGVVYLNNDESTAEDLLEHCEMALEYSTSADRIAYYDRELEHNLME 495

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I   L  A++N+E+ +   P +   D +I   EAL +W     G +S   F+ IAE+
Sbjct: 496 EHQIGLKLVQAIQNNEIDIWLQPQV-HSDGQIRSFEALARWRTDDGGFVSPVVFIKIAED 554

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L ++  +   +L+ +   +  W D+    P  +  N+A ++L+++     + +L ++  +
Sbjct: 555 LGLLPKLAENLLQELVSILAQWNDEHIQTP--VAFNLAGQELMNDAFFALLMSLTAEHPW 612

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               ++L  +E+  +         L  L   G S+ +DDFGT  + L  L  IP + +K 
Sbjct: 613 LGDMLELEITETSPVMTNPLIHKRLRALSSYGYSIAIDDFGTGQASLGQLVDIPANILKI 672

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   ++   +      I++S I +AK++   +IA+ I  +     LT +GCD +Q  +  
Sbjct: 673 DRRFVSPLPQDVRHIDIVKSTITLAKSLNMKVIAEGIETKDQATLLTSLGCDTLQGYYFG 732

Query: 942 SPLGFNSILK 951
            P       +
Sbjct: 733 KPSPIEEWTE 742


>gi|295107650|emb|CBL05193.1| diguanylate cyclase (GGDEF) domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 652

 Score =  343 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 105/425 (24%), Positives = 180/425 (42%), Gaps = 20/425 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  NRQ FL    +++ L          V+ + +  +K IND  G   GD  L   
Sbjct: 222 DQLTGASNRQEFL----SMVSLMDEKGQPFTAVL-VSLSNFKFINDKFGHENGDRFLREF 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISE------NNSLKIADFAIAMRKSIAMPINLLE 649
              +G +      L R SG++F +I   +      + +   A     ++K +  P  +  
Sbjct: 277 AAYLGTV--GEARLYRYSGDQFALIASCDGAGGNHDEAAATATLIAPLQKRLEEPWRIGG 334

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
              TV A+IG  S+ +   T  +++   E A   ++    N           +      I
Sbjct: 335 HSCTVGAAIGAVSYPAIARTPGDVVAALEYATVESRKLEPNTPCVCTPEMMGAIHRRNAI 394

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            + +  A E     L   PI        V  EAL +    + G I   EF+ IAE++ +I
Sbjct: 395 ADVVRRAAEQDGFTLNLQPIWSESARRFVAAEALCRLTDDELGPIPPDEFIPIAEQIGVI 454

Query: 768 KAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPS 826
             +  FMLER    + S+RD         + +N ++   + ++L E + A++++     S
Sbjct: 455 SDVTRFMLERACAFVRSYRDAHPSTTFHGVSVNFSAVQFIQDDLAESVLAVVARHGIPAS 514

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +++  +ES ++ NPE  R  + ++   G+   LDDFGT  S LS L  +PFD VK + S
Sbjct: 515 CLRVEVTESAIIANPEAVRAFMEKMHAQGVRFYLDDFGTGYSNLSTLLELPFDVVKLDKS 574

Query: 887 LMTGSTEKRIAILRSIIPMAKN---IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           ++   TE    ++     +A     + T  +++ +        L R GCD +Q    + P
Sbjct: 575 ILRSVTED-EHLVEFFALLASGFGVLGTQALSEGVETPEQRAFLGRCGCDLMQGYLFSRP 633

Query: 944 LGFNS 948
           L    
Sbjct: 634 LPPEE 638


>gi|34557175|ref|NP_906990.1| nitrogen fixation positive protein [Wolinella succinogenes DSM
           1740]
 gi|34482891|emb|CAE09890.1| NITROGEN FIXATION POSITIVE PROTEIN [Wolinella succinogenes]
          Length = 845

 Score =  343 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 123/660 (18%), Positives = 258/660 (39%), Gaps = 41/660 (6%)

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI 358
                      +AR+ +                +    +   + A + I      L +  
Sbjct: 220 FYPLQDFYGREVARVGVVLDKSLALTIDRIFSFQIAFVSSAGLLASLGILALLFVLVLRP 279

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIV 418
            ++L   + +        L+     F  I  V+   +    I    E+   A+  S  IV
Sbjct: 280 LRQLSKVLQEKDKATLKELLYKEDEFGEISRVVQRFFKQNAI---LEQYKGAIDAS-FIV 335

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRG 477
              D++ +          + G     + G   N +   H ++ R+ F  +       R  
Sbjct: 336 SKGDLLGNITYANDQFCQVSGYKREELLGRNHNIVR--HPDNTREFFAALWKRISSGRI- 392

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                 + R      +++   I P+ N  G+I  Y+ I  DITE  + ++ I+     D 
Sbjct: 393 -WSGVIKNRNKRGGDYYVRAVIVPLMNDEGEIEEYLSIRTDITELYEQMQMIIKQ-TTDL 450

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LTG+PN+Q  L  L   L            ++ ++I++++ +ND  G   GD +LV    
Sbjct: 451 LTGLPNKQQLLHDLENPLSHC---------LLFVNINRFRGVNDSFGHEAGDSLLVEFAN 501

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTA 656
           R+G LL     L RL G+ F   ++ E    ++   +  +  ++   P  ++  EI ++A
Sbjct: 502 RLGALLPMGATLYRLGGDEFA--ILLEEGEGEVERLSRDIFATLEETPFIVVGTEIILSA 559

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSFRSDRVMIKEDLCL 713
            I  A           + +  ++AM +AK       +   + ++        MI   +  
Sbjct: 560 RISSAC------GVELLYQKCDMAMNYAKINNLSFVDFDRNGQIREELERSKMITRMIQE 613

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+ +  +      I+ + +  +  +E L++         S   F+  A+   +   +   
Sbjct: 614 AIRSDFIQAYGQKIVSVKEPNLYKIETLMRIVDGSGKITSPFIFLEQAKNSRLYSRLTRI 673

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           M++++        +      +   IN+  +D+LD+E    +   I       +R+ +   
Sbjct: 674 MIKKVF-------ESFKGNALEFSINLTFEDILDHETTRFILDSIQSMGLQ-NRVTIELV 725

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES  +G      L +   + +G  +++DDFG+  S   Y+  I  D +K +GSL+     
Sbjct: 726 ESEEIGASPEMELFIKEAKALGCKISIDDFGSGYSNFDYILKIGADFIKIDGSLIKNIDT 785

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            + +   +++II +AK +   ++A+ I+ +  ++ +  +G DY+Q  H+  P   +++L 
Sbjct: 786 DKNSYITVKTIIALAKELGIGVVAEYIHSKEVMEVVVELGVDYLQGYHLHEPQKLDALLA 845


>gi|255655435|ref|ZP_05400844.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296451427|ref|ZP_06893164.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296880224|ref|ZP_06904190.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296259694|gb|EFH06552.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296428813|gb|EFH14694.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 744

 Score =  343 bits (881), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 104/426 (24%), Positives = 193/426 (45%), Gaps = 18/426 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+     +   +       N+   +M+++ID +K  ND+ G  VG+++L++LT+++  
Sbjct: 41  PNREFMYQYIDDCISK-----NVHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQKLLH 95

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREIT--VTAS 657
            +     I+A L G  F I+L + +N          +  +  + I L  E+EI   +T S
Sbjct: 96  FIPESKGIVAYLKGEGFLIVLPNVSNKELSTMGTTIVESARELKIQLPNEKEIYSNITFS 155

Query: 658 IGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MIKEDL 711
           IG A W   S +T+  +      A+  AK  G N    F                   ++
Sbjct: 156 IGGAIWNGESNMTTLMLFNQVYSALKKAKSEGKNRYTLFDFKDNTFYNKLENDKEFLSEI 215

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++  ++ + Y P+  + +  IVG EAL +W HP  G ++  +F+ + E+  +I  ++
Sbjct: 216 SYALQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELD 275

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L++ E   R+I  W D  N   + I  N +     +      ++ +  K   S S   + 
Sbjct: 276 LYLFEENCRNIRKWID-NNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIE 334

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG 890
            +E++++ N       L  LR  G S+++DDFG+  S    L  +PFD +K +   +   
Sbjct: 335 ITENILIENTNTIIQQLTELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHN 394

Query: 891 STE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + K   IL SII +A+ +    + + +  E  ++ +  + CD  Q  + A P+     
Sbjct: 395 LNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKQF 454

Query: 950 LKLLKE 955
            KLL +
Sbjct: 455 EKLLSK 460



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 417 IVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF-RTILDSFV 472
            +  +D+  D +      ++  I+G       G +  N    +H +D D   +  L+   
Sbjct: 632 GIIRYDLFGDMIITYMNEEMLDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLEMID 691

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +       +R    D Q   ++     +S  +G  +   G+  DI + K   +
Sbjct: 692 TNKIEPFL--YRFIKRDGQIATVMYTQCNLSAIDGRSI-AQGMYVDINKIKNLTK 743


>gi|255093865|ref|ZP_05323343.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255315618|ref|ZP_05357201.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255518278|ref|ZP_05385954.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|260684455|ref|YP_003215740.1| putative signaling protein [Clostridium difficile CD196]
 gi|260210618|emb|CBA65259.1| putative signaling protein [Clostridium difficile CD196]
          Length = 759

 Score =  343 bits (881), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 100/439 (22%), Positives = 195/439 (44%), Gaps = 14/439 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K+   ++  A+ D++T   ++  F      I+  S+++         I+I K+K IND 
Sbjct: 311 QKNRAQLIKIAYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLV---SINIQKFKLINDS 367

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  L  +   I   L+  ++L R+S ++F +++ +      I  +   +   I 
Sbjct: 368 FGSEAGDKTLKYIHDVISNYLEPGELLCRVSNDQFNVLIKTIPQKE-ILKYIENITNDIN 426

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 E +  +  SIG        +    +   A +A  + K   GNH     V     
Sbjct: 427 SFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTCVFYSDL 486

Query: 703 DRV------MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +R+       ++  +  A+ N+E  +   P I L D  IVG EAL++W  P  G I   E
Sbjct: 487 ERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKGLIPPDE 546

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E+   I  ++ ++ E++   I  W D     P+ + +N +  +L + +  E  + 
Sbjct: 547 FIPFFEKNGFITKLDHYVFEKVCSMIRKWID-NGETPMPVSVNFSRANLNNIDFLEKYRM 605

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L +K       +++  +E++V  N ++   ++ ++ + G   +LDDFG+  S L+ L  I
Sbjct: 606 LRNKYNIPAKLLEIELTETLVFENLQKLINIIDQIHEEGFQCSLDDFGSGYSSLNMLKEI 665

Query: 877 PFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             DT+K + +  +      IA   ++ SI+ +AK +    I++ +   + +  L ++ CD
Sbjct: 666 KVDTLKLDRAFFSSPNADNIAENHVIESIVNLAKKLNMNSISEGVETILQMDYLKKINCD 725

Query: 934 YIQDSHVASPLGFNSILKL 952
            IQ    + PL      K+
Sbjct: 726 MIQGYVFSKPLPQEIFEKM 744


>gi|167822730|ref|ZP_02454201.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 9]
          Length = 468

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 186/452 (41%), Gaps = 22/452 (4%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +   +  + + +  +      D LTG+ +R  F   +   L     +      ++
Sbjct: 16  SGRVLVLKSLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALL 72

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D+++ +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  
Sbjct: 73  FVDLDRFRIVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASA 132

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHR 687
           ++                  +  +VTAS+G A            + ++ A +A   AK R
Sbjct: 133 VSAAERLRASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKAR 192

Query: 688 GGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL----- 738
           G N V+         +     V     +  A+E  +  L   PI+    +   GL     
Sbjct: 193 GRNRVQLADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPSARR 252

Query: 739 -EALIQW--DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            E L++      + G      F+  AE   ++  I+ +++  +   +   R +       
Sbjct: 253 GELLLRMGALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE--- 309

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
             IN++   + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G
Sbjct: 310 YAINLSGISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALG 369

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
               LDDFG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    
Sbjct: 370 CRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKT 429

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           IA+ +     +++L  +G DY Q  ++  P+ 
Sbjct: 430 IAEYVDSAATLQKLAALGVDYAQGYYIGRPVP 461


>gi|126699026|ref|YP_001087923.1| putative signaling protein [Clostridium difficile 630]
 gi|115250463|emb|CAJ68286.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 744

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 102/428 (23%), Positives = 188/428 (43%), Gaps = 18/428 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+     +   +       N+   +M+++ID +K  ND+ G  VG+++L++LT+ +  
Sbjct: 41  PNREFMYQYIDDCISK-----NIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLH 95

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREIT--VTAS 657
            +     I+A L G  F I+L + +N       A  +  +  + I L  E+EI   VT S
Sbjct: 96  FIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESARELKIKLPNEKEIYSNVTFS 155

Query: 658 IGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MIKEDL 711
           IG   W      T+  +      A+  AK  G N    F                   ++
Sbjct: 156 IGSTIWNGEPNMTTLMLFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEI 215

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              ++  ++ + Y P+  + +  IVG EAL +W HP  G ++  +F+ + E+  +I  ++
Sbjct: 216 SHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELD 275

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E   ++I  W D  N   + I  N +     +      ++ +  K   S S   + 
Sbjct: 276 LHLFEENCKNIRRWID-NNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIE 334

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG 890
            +E++++ N       L  LR  G S+++DDFG+  S    L  +PFD +K +   +   
Sbjct: 335 ITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHN 394

Query: 891 STE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + K   IL SII +A+ +    + + +  E  ++ +  + CD  Q  + A P+     
Sbjct: 395 LNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEF 454

Query: 950 LKLLKERF 957
            KLL +  
Sbjct: 455 EKLLSKEN 462



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 417 IVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF-RTILDSFV 472
            +  +D+  D +      ++  I+G       G +  N    +H +D D   +  LD   
Sbjct: 632 GIIRYDLFGDMIITYMNEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMID 691

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +       +R    D Q   ++     +S  +G  +   G+  D+ + K   +
Sbjct: 692 TNKIEPFL--YRFIKRDGQIVTVMYTQCNLSAIDGRSI-AQGMYVDVNKIKNLTK 743


>gi|91226425|ref|ZP_01261224.1| GGDEF family protein [Vibrio alginolyticus 12G01]
 gi|91189239|gb|EAS75519.1| GGDEF family protein [Vibrio alginolyticus 12G01]
          Length = 606

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 197/449 (43%), Gaps = 20/449 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++E+  K L  +      DNLTG+ NR    D L T+   +        ++  +DID +K
Sbjct: 162 VSERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFSLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLSSPNNAFRVAGDEFAFITYD----EDPVAVCQEV 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S E++ NA LA+   K      ++ +  
Sbjct: 274 LDKIESGYSDKSNRISFTVSIGIARAPVHMLNSDELILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRV--MIKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E +         ++ ELY+V  PI+ +  +     E L +W+   +G
Sbjct: 334 HLSALYHRRTQLIEAMRIQLSTDIQDSDELYVVVQPIVDITSDRWNYFEILTRWNSNIYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E          +      + + IN ++ +L+D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIELGERIIELAC-IAKQELEANLGYKVKLSINCSAYELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ K  +      +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YINHLTNMVEKYQHEAKDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +           ++  I  +A+ ++  +IA+ +  +  +++L
Sbjct: 513 LNYIHNYPIDSIKIDATFVQNMLSNTTSEQVVFLIAQLAELLDVDLIAEGVEDDRALQKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
             MGC YIQ    + P     I+ L+ ER
Sbjct: 573 IEMGCHYIQGYFYSRPHSVEEIVHLINER 601


>gi|194365689|ref|YP_002028299.1| cyclic nucleotide-binding protein [Stenotrophomonas maltophilia
           R551-3]
 gi|194348493|gb|ACF51616.1| cyclic nucleotide-binding protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 590

 Score =  343 bits (880), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 184/409 (44%), Gaps = 5/409 (1%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++   A        +M +DID +  +N+ +   VGD  LV + +R+   L+    L R 
Sbjct: 26  QVMVAEAASGGTPLMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRH 85

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             + F I +          DFA  +R+ + +P+++L   + +T  +G +       ++S 
Sbjct: 86  GSDEFLIAVPRTVEVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASSTSR 145

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +L +AE A+Y A   GGN V    V +  S      I   +  A+ N EL L Y P++  
Sbjct: 146 LLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSA 205

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  +VG+EAL++W  P  G +    FM  AE L +I  I  ++LE   +    WRDQ  
Sbjct: 206 RDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALKQARLWRDQGF 265

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I +N+++  LL       +  +I  +      + L  +ES +  N       L  
Sbjct: 266 D-DFTIAVNVSTLQLLRPNFFAEVMGVIQASGVPAQMLTLEINESALTNNVNFVHETLAN 324

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKN 908
           LR  GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   
Sbjct: 325 LRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQ 384

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +  T+IA  +  +  +  L R  CD  Q      P+  ++    L+ R+
Sbjct: 385 LGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRY 433


>gi|225377856|ref|ZP_03755077.1| hypothetical protein ROSEINA2194_03515 [Roseburia inulinivorans DSM
           16841]
 gi|225210294|gb|EEG92648.1| hypothetical protein ROSEINA2194_03515 [Roseburia inulinivorans DSM
           16841]
          Length = 573

 Score =  343 bits (880), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 206/542 (38%), Gaps = 31/542 (5%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            ++       +       G+        +      IH +D   F+      V  +     
Sbjct: 50  TNLRTGITWWSERAMDYFGMKENYTIRGMEKANRKIHPDDVATFKRGFKERVDGKNLDTA 109

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND---ITEQKKSLEGILCNAFQDN 537
           +E+R++  D  ++      R + +        I I  D   I+++             D+
Sbjct: 110 WEYRIQDGD-SYNRFNAMARVLYDEQKQP-FIIIIRYDNYGISDEV------------DS 155

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +TG+    +    +T +L     D+     ++ I +D++  IN + G A  D++L  + +
Sbjct: 156 VTGLYTEPALNRHITQLL-----DNTRPSALLKIGLDQFSHINVMYGAAFADNILNKVAQ 210

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            +  +++      RLSG +F ++    +    + D    +  ++A  I +  + I +  S
Sbjct: 211 SLLHMVRNIGYAYRLSGAKFVLVFDKISKIE-LRDIFNFIEDALANTITVNGKRIPIKIS 269

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
            G          ++ +      A  H+++   + +  F          +  +   +    
Sbjct: 270 AGAIFLEPYMKETNAVRSRLTYAQNHSRYEHHSDLVIFNDEICGNNEKQFELIGLIHQCA 329

Query: 716 ENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            +      L Y PI      +I G+EALI+W+   +G IS   FM   EE   I  +  +
Sbjct: 330 TSHFEGFRLFYQPIADTKTGKIRGMEALIRWELEPYGLISPGIFMEWLEEDPCIFDLGNW 389

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L    +DI   RD+      F+ +NI++  L   E  + +  ++ +T   P  + L  +
Sbjct: 390 ILRTALKDIGRIRDKIPH--FFVNVNISAAQLSRKEFRDSVMTILKETGARPEELCLELT 447

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           E     +    +  +      GI + LDDFGT  S LS    +P D +K + S +     
Sbjct: 448 ERCRDLDVTFLKNEVDFFHSKGIKIALDDFGTGNSSLSLALELPIDELKVDMSFIKDIEH 507

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +  A+++SI+  A    T    + I  +     + + G  + Q    + P+  +    
Sbjct: 508 KPQNQAMVQSIVDYANRTNTETCIEGIENQEVSDYIHQFGATWYQGYFYSKPVPIDQFET 567

Query: 952 LL 953
           LL
Sbjct: 568 LL 569


>gi|169826451|ref|YP_001696609.1| sensory box, GGDEF family protein [Lysinibacillus sphaericus C3-41]
 gi|168990939|gb|ACA38479.1| sensory box, GGDEF family protein [Lysinibacillus sphaericus C3-41]
          Length = 674

 Score =  343 bits (880), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 112/542 (20%), Positives = 225/542 (41%), Gaps = 25/542 (4%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVGYRRGR 478
             D     +    +           + G    +      ND  +     +   +      
Sbjct: 147 TLDHDGFILECNNEFLKTSQWTPKRVIGK--TFWQLFPDNDTSEKVTNTIWRNLNN-GHT 203

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            Q E        Q +W+++   P  N      ++  I  DIT+ K     +   A+ D  
Sbjct: 204 WQGEVEKITKAGQSYWVLLTAIPTFNLETGEQQFFLIEKDITKSKTIQHQLEKIAYIDTE 263

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N      RL  ++     DD    + + + IDK+  + ++    +   +++  T R
Sbjct: 264 TGLMN----AHRLEKVISNMIEDDR-HFSFVYLSIDKFYTLKELHDQQIDQSLIIEFTNR 318

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           I  +      +AR++ N F +I                +      PI      + ++ S 
Sbjct: 319 IK-MYFQDSTMARINENDFVVITPLSE-----WFIQGFLSYLQQHPIYSGNIAVPISISG 372

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G   +   + T S+++K +   +   +  GG+ + S   ++ ++      I++ L  A++
Sbjct: 373 GITRYPEDQTTFSQLMKASIATISTVREAGGDKIVSLSTATHKALNRKALIEKRLLQALD 432

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
              L ++Y P I +   +I  +EAL++W+    G +S  E + IAEE  +I  I  FMLE
Sbjct: 433 QKNLKVLYQPQIDVYSGKITAVEALVRWEDEVIGVVSPDELIPIAEETGLINNIGSFMLE 492

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           R     + W+   +   + + IN + ++  D  + + +  +I+KT    + +++  +E  
Sbjct: 493 RACEQALIWKKAGHE--LKVSINSSVREFRDKNMAKSILEMIAKTGCPANLLQIEITEKF 550

Query: 837 VMGNPERSRLLLGRLRKI---GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
            +   E +  +  ++RK+   GIS  LDDFGT      Y+  +P DTVK + +       
Sbjct: 551 ALE-AEAATSIAQQMRKLENEGISFILDDFGTGYGSFRYMQILPIDTVKIDQTFTNSLLK 609

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +EK   ++  ++ + K++E  ++A+ +        L   GCD IQ  +++ P+  + I  
Sbjct: 610 SEKSQKLMNGMVQLGKSMELKVVAEGVETAEQADLLITYGCDAIQGYYISKPVTPDEIEA 669

Query: 952 LL 953
           LL
Sbjct: 670 LL 671


>gi|157376472|ref|YP_001475072.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
 gi|157318846|gb|ABV37944.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
          Length = 500

 Score =  343 bits (880), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 215/426 (50%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  NR     +L +++         + T+++ID+ +++ +ND+ G +VGD +L+SL
Sbjct: 78  DKLTGFSNRLGLKSKLMSLM------PLTQGTLVLIDVYRFRFVNDLFGFSVGDKLLLSL 131

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           ++R+  L +    LAR++ + F +      +S +  D  +++R  + +P  + +  ITV 
Sbjct: 132 SKRLTALDEEVTFLARMNEDEFLLYF----DSAQAEDTLLSIRHELQVPFEIDDTPITVQ 187

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDLCLA 714
             +G+          S++L+  +LA+  AK                +  ++ I   L  A
Sbjct: 188 IQMGYLDLEQHHTDMSQLLRRLDLALIKAKQDKYFFASYVKGDDVSQHRQLSIINRLPKA 247

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   ELY+VY P + L D   V +EAL++W+H + G +S +EF+ + E   MIK ++ + 
Sbjct: 248 LALGELYMVYQPKLTLSDGRCVQVEALMRWEHHQLGVLSPAEFIPLVECAGMIKVVSQWA 307

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L+++      W+       + + +N++++DL+   LC+ +QA + +     S + +  +E
Sbjct: 308 LDQVISQQAKWKQSGLH--LQVAVNLSTQDLISGTLCDDIQAKLHRHKVDASALSIEITE 365

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S +M + E +   + RL+++G+ + +DDFGT  S L+YL   P D VK + + +      
Sbjct: 366 STLMDDMETAVQTIKRLKQVGVDVAIDDFGTGHSSLAYLKNFPVDEVKIDKAFIDDLLVD 425

Query: 895 RIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK- 951
             A  I++  I +AK +   +  + +  E     LT MG D IQ    A P+    + + 
Sbjct: 426 SRALHIMKCSIELAKGLAFKVTVEGVETEEIYLALTNMGVDKIQGDLFAKPMSAKELEES 485

Query: 952 --LLKE 955
             LL++
Sbjct: 486 WGLLQQ 491


>gi|229577501|ref|YP_001178632.2| putative phosphodiesterase [Enterobacter sp. 638]
          Length = 657

 Score =  343 bits (880), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 196/460 (42%), Gaps = 17/460 (3%)

Query: 510 LRYIGIANDITEQKKSLEGIL--CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  +  + +I +Q+          NA +  ++ +PN+   +  L   +    T       
Sbjct: 206 IGMLVRSYNINQQRLLRHQDELNSNATRFPVSELPNKAFLMALLEQTVARQQTT-----A 260

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M I  +  +    VL  +  + +L++L  +I  +L    +L ++SG  F I+       
Sbjct: 261 LMAIACETLQDTAGVLKESQREMLLLTLVEKIKSVLAPRMVLTQVSGYDFVILAHGVKEP 320

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                    +   I   + +   ++  +ASIG A +    +T+ ++ + A  A + A+ +
Sbjct: 321 WHAITLGQQVLTVINERLPVQGIQLRPSASIGLAMYYGD-LTAEQLYRRAFSAAFTARRK 379

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N ++ F        +  +  + D+  A++N++  L   P + L   E+   EAL++  
Sbjct: 380 GKNQIQFFEPEQMEKAQRRLTEESDILTALDNNQFALWLQPQVNLETGEVKSAEALLRVQ 439

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P          +   E   ++  +  ++LE   R + +W+++    P  + +N+++  L
Sbjct: 440 QPDGSWELPEGLIERIESCGLMVTVGYWVLEESCRQLSAWQERGIEMP--LSVNLSALQL 497

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +   +   M  LI++    P  + L  +ES  + +P  +  +L  LR  GI + LDDFG 
Sbjct: 498 MHPTMVSEMLELINRYRIKPDTLTLEVTESRRIDDPNEAVAILKPLRNAGIRIALDDFGM 557

Query: 866 KCSLLSYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
             + L  L +   +P D +K + + + G      +++ +II MA++++  +IA+ +  E 
Sbjct: 558 GYAGLRQLQHMKTLPVDVLKIDKTFVDGL-PDDSSMVEAIIQMARSLDLHVIAEGVETEA 616

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERFPLVK 961
               L + G +  Q    A  +  +    + L       K
Sbjct: 617 QRDWLAKAGVESGQGFLFARAVPPDEFEKRYLTAENTPAK 656


>gi|317494477|ref|ZP_07952890.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917407|gb|EFV38753.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 658

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 209/460 (45%), Gaps = 15/460 (3%)

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+   +   L       +    +K+ + +   + ++ +T +PN   F+  L   L +   
Sbjct: 200 PLHGDDELGLLVRNYNRNQQALEKAHQAMSRMSTRNPVTNLPNMTLFVPLLEQHLLVCRK 259

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           +++    ++VI+I   ++   VL  A  D +L SL  R+   +   D+LA+++ +RF ++
Sbjct: 260 ENS---GIVVINICTLQEAMGVLDAAQRDMLLNSLICRLKACVSDSDMLAQINQDRFVVL 316

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK-------ITSSEM 673
           + +      +  FA  +   I  P++L    I  TA IG + +             + ++
Sbjct: 317 VRNVEMPHSLTLFAKNVMDIITQPLDLGAIAIRPTACIGISLYQPDPKQPIDAKRDAEQL 376

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLM 731
           L  A  AM  A   G N +  F  +  +  +  +  + ++  A+   +  L   P I L 
Sbjct: 377 LSQASSAMNVAAREGKNQILFFEPTLAQKAKDRLTKETEIMSALTQGDFSLYLQPQIDLR 436

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              + G EALI+W+      +  SEF+ +AEE+  I+A+  +++      + +W+ Q   
Sbjct: 437 TGRLAGAEALIRWNRQDGELMLPSEFIPLAEEVGGIEALGEWVITESMEILSTWQKQNIG 496

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            P  I +N++   + +    E ++ ++ +    P  + L  +E+  + N  ++  +L RL
Sbjct: 497 VP--ISLNVSGVQIANLGYVELLERMLLEYQLDPHMLHLEVTETAYISNITQAAEMLARL 554

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           RKIGI + LDDFG   + L+YL ++P D +K + + +        A++R +  +A+ +  
Sbjct: 555 RKIGIKIALDDFGMGYAGLNYLQHLPVDIIKIDKNFVDQIPHDD-ALVRIVASIAEVLAL 613

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++A+ +      + L + G  Y Q    +  L  +   +
Sbjct: 614 DVVAEGVESHTQCEWLLKHGIYYAQGYWFSPALPQDEFER 653


>gi|269966160|ref|ZP_06180250.1| GGDEF family protein [Vibrio alginolyticus 40B]
 gi|269829307|gb|EEZ83551.1| GGDEF family protein [Vibrio alginolyticus 40B]
          Length = 606

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 197/449 (43%), Gaps = 20/449 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++E+  K L  +      DNLTG+ NR    D L T+   +        ++  +DID +K
Sbjct: 162 VSERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFSLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLSSPNNAFRVAGDEFAFITYD----EDPVAVCQEV 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S E++ NA LA+   K      ++ +  
Sbjct: 274 LDKIESGYSDKSNRISFTVSIGIARAPVHMLNSDELILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRV--MIKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E +         ++ ELY+V  PI+ +  +     E L +W+   +G
Sbjct: 334 HLSALYHRRTQLIEAMRIQLSTDIQDSDELYVVVQPIVDITSDRWNYFEILTRWNSNIYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E          +      + + IN ++ +L+D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIELGERIIELAC-IAKQELEANLGYKVKLSINCSAYELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ K  +      +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YINHLTNMVEKYHHEAKDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +           ++  I  +A+ ++  +IA+ +  +  +++L
Sbjct: 513 LNYIHNYPIDSIKIDATFVQNMLSNTTSEQVVFLIAQLAELLDVDLIAEGVEDDRALQKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
             MGC YIQ    + P     I+ L+ ER
Sbjct: 573 IEMGCHYIQGYFYSRPHSVEEIVHLINER 601


>gi|225388734|ref|ZP_03758458.1| hypothetical protein CLOSTASPAR_02470 [Clostridium asparagiforme
           DSM 15981]
 gi|225045204|gb|EEG55450.1| hypothetical protein CLOSTASPAR_02470 [Clostridium asparagiforme
           DSM 15981]
          Length = 915

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 204/528 (38%), Gaps = 44/528 (8%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN--QFHWM----IIRI 499
            G  + WL     ++ +  + ++ + V   +      + +          W+       +
Sbjct: 397 IGDYQVWL-----DELEKHKKVVINDVEEIKDSFHVGYELLTQQGIRNIIWVPLIKNGTV 451

Query: 500 RPMSNSNGDILRYIGI----------ANDITEQKKSLEGILC-NAFQDNLTGIPNRQSFL 548
                 +   L    I             +T Q+   E +L   +  D LT   NR  F+
Sbjct: 452 NGTIGLDNQDLGMAEIAVPFLQTVQYFLSLTMQRNENEKMLFELSQIDRLTSFYNRNRFI 511

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             ++ + +           V+ +DI+  K+ ND  G   GD ++ +    + +     + 
Sbjct: 512 QDVSELKER-----KASVGVVYLDINGLKETNDSFGHDAGDKLIKACADIMKKSAASKN- 565

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           L R+ G+ F II +         D    ++ +               A+IG      S  
Sbjct: 566 LYRIGGDEFVIIYLDIA-KGDFYDKVQLLKNAFEKS--------ACQAAIGCKWSEESA- 615

Query: 669 TSSEMLKNAELAMYHAKH---RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
              E++K A+  MY  K    +G +    +R ++     +   + L   +EN E  +   
Sbjct: 616 DIQEIIKEADELMYSDKKKFYQGHHATGRYRHNNDVLRFLADPDVLKQKIENHEFTVYLQ 675

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
             I +    + G EALI++       ++   F+ + E+  +I  I+ ++ E + + + +W
Sbjct: 676 AKIDVEGGRMAGAEALIRYRDENGSIVAPDRFIPVLEDTYLISKIDYYVFEEVCKALSAW 735

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             Q     I +  N +    ++++  + ++A+  K       +++  +ES  + + +   
Sbjct: 736 NQQ-GKSGITVSSNFSRITFMEDQFVKRIEAISEKYHVQRKYLEIEITESAKVTDLDTLV 794

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
             + ++R  G S+ +DDFG + S L+ L ++  D +K + S +      ++   I+ ++ 
Sbjct: 795 ARIDQMRNSGFSVAMDDFGVESSNLAMLSFVKIDVLKIDKSFVKDIVTNKRAQIIIGTMT 854

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            M + +   +IA+ I  E  +  +   G   +Q    + P+  +   +
Sbjct: 855 EMCEEMGIQLIAEGIEDEQQLDVVREYGVKTVQGYLFSRPIPISEYEE 902


>gi|237748035|ref|ZP_04578515.1| signaling protein [Oxalobacter formigenes OXCC13]
 gi|229379397|gb|EEO29488.1| signaling protein [Oxalobacter formigenes OXCC13]
          Length = 963

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/531 (17%), Positives = 214/531 (40%), Gaps = 22/531 (4%)

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV----RAADNQFHWM 495
           L+S  +      +          N  +  + ++   R     EF +    +  +     +
Sbjct: 434 LSSHELADYTVEFAIAFSPETDTNVISAFNKYIRQLRSFKMQEFVIANTAQRPNTTLFTL 493

Query: 496 IIR--IRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           I    +      +  +L  IG+ + I   + ++ + I    + D +T +PN   F +   
Sbjct: 494 IREKPVSAFYIFSLVLLLTIGVFSFIIITRNRAHKRIADLLYFDQITRLPNLVRFNELAE 553

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILA 610
             L  S         ++ ++I+ +K IND+   + G+ +L ++  ++   +     ++  
Sbjct: 554 ERLKSSPASH----ALVYLNINNFKHINDIHDFSRGNFLLCAVADKLNAFIDEDRGELAC 609

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R++ + F ++L S  +   + +   A+   ++   N+      ++ S G      S    
Sbjct: 610 RMTADHFVLLL-SVKDHENLDERISALDGQLSSFNNIGLNS-HISFSCGIYLI-KSGDNI 666

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           +  +  A  A    +    N    F             I+ ++  A+ + +    + P +
Sbjct: 667 NTAVNYAHYAQVSQRRASYNTYTFFDDKLIERIRINRAIECEMNDALASGQFVPYFQPKV 726

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +   +IVG EAL +W HP+ G I   EF+ + E+   I  ++L + E +   +    D+
Sbjct: 727 SVATGQIVGAEALTRWIHPEKGLIPPDEFIPLFEKNNFIIQLDLTIFEEVCILLRKLMDE 786

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                     N +    +D  L E + A+ ++     + + +  +E+ V+ + +    + 
Sbjct: 787 GKKV-YPCSCNFSHNHFMDRALPEKLLAITTRYRIPTNLLDIEITETSVIYDIDAVIDIT 845

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMA 906
            +LR  G  ++LDDFG   S ++ L  I  DT+K + S +  ++    + +++  I+ +A
Sbjct: 846 RKLRDAGFKISLDDFGVGYSSVNLLCQIAIDTIKLDKSFLDQASILPCQRSLIEGIVDIA 905

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKER 956
            ++   ++ + I  E+    L +  C + Q  +   P+ F+    + L   
Sbjct: 906 NDLGIDVLCEGIETEMQAVFLKQANCAFAQGYYYGRPVSFDEFSHRWLNRY 956


>gi|325284832|ref|YP_004264294.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
 gi|324316547|gb|ADY27659.1| diguanylate cyclase/phosphodiesterase [Deinococcus proteolyticus
           MRP]
          Length = 813

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 207/449 (46%), Gaps = 17/449 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++S E +  +A  D+LT + NR+     +   L        L        +D +K++N
Sbjct: 372 ELRESQEKLSVHAAHDDLTPLLNRRGISHLIDRELQRQQAGALLLLD-----LDHFKQVN 426

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           DVLG  VGD VL  + RRI   L      AR+ G+ F +      +   + D A A+  S
Sbjct: 427 DVLGHDVGDAVLQEVARRIQGQLPPGVHAARIGGDEFVLFFPGSCSPETVHDRARAVLSS 486

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSS 699
           +A P++L  R + + AS G +   +       + K+A+LA+Y AK  R      +  +S 
Sbjct: 487 VAQPLSLAGRTLKLDASGGLSFCPADAGDQLTLYKHADLALYSAKEQRSALRTYTADLSV 546

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              +R+ I++DL  A++  E  L Y P+I +    + G EAL++W+HP  G +    F+ 
Sbjct: 547 RARERLEIEQDLRQALQGGEFELYYQPVIDVRRGVVSGAEALLRWNHPHLGLLGPQRFIP 606

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE+  +I A+  +++ R   D+   R         + +N++ + LL  +  E +   +S
Sbjct: 607 VAEQSDLIVALGDWVIRRAVEDLARIRAAC--KDCVVSVNVSPRQLLKLDFTEELSRALS 664

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   +P  + L    +        +  +L  LR+ G  L LDD G   S    L  +P  
Sbjct: 665 QHGLTPGTLTL--ELTEETALLPAATGVLAELREQGFRLALDDVGRGHSNWVRLAVLPAQ 722

Query: 880 TVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +K +  +M   T +        A++R+++  A N +  ++A+ +     ++ L  + CD
Sbjct: 723 LLKIDQEIMRHLTHRAEQSSALDAVVRALVTFAHNGQMQVVAEGVETREQLRLLRDLNCD 782

Query: 934 YIQDSHVASPLGFNSILK-LLKERFPLVK 961
           + Q    A PL   + L  LL E + + K
Sbjct: 783 FFQGFLAAEPLPLPAFLTYLLAEHWTVPK 811


>gi|152989958|ref|YP_001355680.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421819|dbj|BAF69323.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 878

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 125/593 (21%), Positives = 241/593 (40%), Gaps = 22/593 (3%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +  L+L ++         +L      Q +    +        S D +  +D   +     
Sbjct: 164 LINLILSILNAHIKNSIQLLDRYDKEQKLKEHLKIYKDIFSSSLDGIIIFDEKNNLFDIN 223

Query: 432 PDIATILGLASGSMH--GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA-A 488
                + G+    +     ++ +  YI   D    +T+LDS +  +  +   E  ++   
Sbjct: 224 ESFMNMAGMKRSELDHINILQFFKDYI---DFCKNKTVLDSIINRK--KFINECWIKNAR 278

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                 ++I   P+  S   +  YI    DI+  KK  + +   A+ D LTG+PNR   +
Sbjct: 279 SLSLLPVMISGFPL--SINGLQYYILFVKDISRIKKQEKKLEYAAYHDPLTGLPNRALAI 336

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           DRL   ++ +    ++   V+ ID+D +K+IND  G  VGD  L  + + + E+++  D 
Sbjct: 337 DRLQVAMERAKRRGSM-IAVLYIDLDGFKEINDKYGHQVGDIFLKKVAKNLQEVIRGEDT 395

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-- 666
           +AR+ G+ F  I+               + ++ +  +++   ++  TASIG   +     
Sbjct: 396 IARIGGDEFLGIIQDIEMRSFNDSIFYRILEAASKTVDINGHQLKATASIGITFFPREYN 455

Query: 667 -KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
               +  +++ A++AMY AK  G N    F      +     K D    ++N E  + Y 
Sbjct: 456 KDKDAEHLIREADIAMYKAKTTGKNRYVFFDDKVLETRS---KFDFDKGMKNKEFIVYYQ 512

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PII      + G EAL++W+      +  S F+   +    +  ++ F++ +   D+ S+
Sbjct: 513 PIIDTKQGSVFGFEALVRWNLYHKDLLVPSAFLSYIKSFETLLKLHKFVIVQSMHDLQSF 572

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
                 P  +I INI S      +  E +  + S        +     E  +  N   + 
Sbjct: 573 ISNGFHP--YISINIDSNIFYHKKFIEMIDEIFSTFE-HCDLVIFEIEEKGLGENRSSNH 629

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            +    +K GI + +D+F  +   L++    PFD +K + SL+  +    +  AIL    
Sbjct: 630 DIFEVCKKHGIKILIDNFKGEYFTLTHFINFPFDFIKVDKSLIINAIQDIENFAILEGSY 689

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +A+     +IA  +     I  L  +G  YIQ   +A P      L+ + + 
Sbjct: 690 AVAEAFLKDVIALGVETSDIIPTLNEIGIHYIQGYEIAKPKKLQDALQWITQY 742


>gi|229917546|ref|YP_002886192.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Exiguobacterium sp. AT1b]
 gi|229468975|gb|ACQ70747.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Exiguobacterium sp. AT1b]
          Length = 1055

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 204/461 (44%), Gaps = 19/461 (4%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            P+ +  G +   + +  D++E+ +           D LTG+PN       L  + +   
Sbjct: 103 VPIEDEAGLVRYVLSLTTDLSEEAEIKLLRSIE-HMDYLTGMPNLMKVKLELDQLFE--- 158

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             D    +VM + I+++K +  + G+   + ++  +TR++   L    I+ R+ G  F  
Sbjct: 159 QHDTEETSVMRLHINRFKMMMSLQGVERSNQLIKDITRQLANTLPKGSIIGRVDGEDFIA 218

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L      L        +    +    + + E  +++ IG     +    +  ++ NA  
Sbjct: 219 VLPHVPIQLAYMYAEHLLDVISSHSYQVADAEFPLSSCIGIG---AGTADADRVIMNAST 275

Query: 680 AMYHAKHRGGNHVESFRVS---SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           A+  A+  G   +  +          D +MI+ +L  A++  ELY+VY P + +     +
Sbjct: 276 ALLEARQTGNQTIHLYEHDEYVQRYIDEMMIETELVKALKLDELYMVYQPKVSMDGA--I 333

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EALI+W+ P  G +S   F+ +AE+  +I+ +  F++ ++ +D+ S  +Q       +
Sbjct: 334 HFEALIRWESPVLGFVSPETFIRVAEQSLLIEDVTRFVMNQVCQDVSSHPEQFAGR--RV 391

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L        + A+I+     P + +   +E  +M  P  +   +  L++ G 
Sbjct: 392 AVNVSPN-LFHEHHMNELVAIIASYGLVPEQFEFEVTEHTLMHEPVAAIKTVESLKQQGF 450

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMAKNIETT 912
            L +DDFG   S L+YL     D +K + S +    ++       I++ I+ +AK +E  
Sbjct: 451 RLLIDDFGVSYSSLNYLKLFEIDGIKIDRSFVAQLDQESGMKEYEIVKLIVSLAKKLELE 510

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + A+ +  E   + L ++GCD IQ    + P+    + + L
Sbjct: 511 VTAEGVETEEQYRILRQLGCDEIQGYFFSRPMPLAELEEAL 551



 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 15/177 (8%)

Query: 522  QKKSLEGILCN-AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +K+  +  +   A QD LT + NR +    L               T++++++D + +IN
Sbjct: 883  RKERKQREMIRIAKQDQLTKLYNRHTLTTDL-----YKKMHRTPSITLILVNLDDFTRIN 937

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            +  G  +GD+VL+ + +R+ E ++     + R S + F ++     + ++       + +
Sbjct: 938  NQYGHMIGDEVLIEIAQRLNEFVQRVGGQVYRFSDDEFVLVQTGPLSGVE------QINE 991

Query: 640  SIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             I+  I+      I +TAS+G      S  T   +L+ A+ AMY AK+ GG+    +
Sbjct: 992  VISQGIHASNGEVIHLTASVGVTLV-QSTDTVDSILQQADAAMYIAKNNGGDQWFQY 1047


>gi|12515189|gb|AAG56280.1|AE005356_6 hypothetical protein Z2221 [Escherichia coli O157:H7 str. EDL933]
 gi|13361559|dbj|BAB35516.1| oxygen sensing protein [Escherichia coli O157:H7 str. Sakai]
 gi|209748518|gb|ACI72566.1| oxygen sensing protein [Escherichia coli]
 gi|209748520|gb|ACI72567.1| oxygen sensing protein [Escherichia coli]
 gi|209748522|gb|ACI72568.1| oxygen sensing protein [Escherichia coli]
          Length = 367

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 170/367 (46%), Gaps = 8/367 (2%)

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            R  E LK    L R+ G +F  ++  EN+   I   A  +R  ++ PI + +    +T 
Sbjct: 3   NRFREKLKPDQYLCRIEGTQFV-LVSLENDVSNITQIADELRNVVSKPIMIDDNPFPLTL 61

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLA 714
           SIG +           +L  A  AM + +  GGN  + F  +     +  +     L  A
Sbjct: 62  SIGISY--DVGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEA 119

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           + N++L LVY P I     E+ G+EAL +W  P+ G++  S F+ +AEE+  I+ I  ++
Sbjct: 120 ISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWV 179

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +    R +  WR Q    P  + +N+++     N+L   +   +        ++ +  +E
Sbjct: 180 IAEACRQLAEWRSQNIHIPA-LSVNLSALHFRSNQLPNQVSDAMQAWGIDGHQLTVEITE 238

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S++M +       +  LR +G+ L++DDFGT  S LS L  +P   +K + S +     +
Sbjct: 239 SMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTE 298

Query: 895 RI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +   A+L +I  + +++  T++A+ +  +   + L ++ C  IQ    + PL    I   
Sbjct: 299 KRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGW 358

Query: 953 LKERFPL 959
           +    PL
Sbjct: 359 MSSVLPL 365


>gi|315185363|gb|EFU19136.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Spirochaeta thermophila DSM 6578]
          Length = 519

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 121/555 (21%), Positives = 227/555 (40%), Gaps = 64/555 (11%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E  S  +      V   D     +      + + G    S +  IR +L     +  + F
Sbjct: 4   ELFSDVLSSLPMEVAITDEEGRILWANDAFSLLTGYGRTSSYMLIRQFLLMFAEDRPEVF 63

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +D      R  L+   R    D +                              ++ 
Sbjct: 64  VKGVD-----GRPCLRILTRWSFRDGKKIVWSF------------------------ERL 94

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +     +  D+LTG+  R+ F     ++L  +   +     +MVID+D +K+IND+ G
Sbjct: 95  VADPKKAFSSHDSLTGLMGREWFFREAGSLLASA-RLEGTSFVLMVIDLDGFKRINDLYG 153

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             VGD+VL  + RRI   L+  D+++R   + F ++L    +   I   A  +  SI   
Sbjct: 154 PEVGDEVLRIVARRIAGHLRAEDLVSRTGSDEFAVLLHDVADPAGI---ARRVLASIREG 210

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSD 703
           + +    ++++ASIG   +    ++  E++  A+ A+  AK HR      +  V      
Sbjct: 211 MVVGGHALSLSASIGAGVFPRDGLSLEELVAAADAALLAAKAHRDTVRFCTPDVRRRMMH 270

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R  ++  +   +    ++L Y PI+R+    + G+EAL +      G +   EF+ I EE
Sbjct: 271 RWDMERLVLDRIREGRIHLFYQPIVRVASGMLAGVEALSRLLGEDGGLVLPDEFVPILEE 330

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +   +L         W+ +     +F+ +NI+ ++ L  E  + ++ ++  + +
Sbjct: 331 GKVIHLLGRKVLALAVLQGELWKVRG----LFVSVNISPQEFLHPEFVDVVREVLDASGF 386

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  + L  +ES ++G+ +R+  +L  LR  GI + +DDFGT  S  + L  +P D +K 
Sbjct: 387 PPELLMLEVTESSLVGDVDRTVQVLSALRDEGIRVAVDDFGTGYSSFASLKRMPVDVIKL 446

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAK------------NIETTIIAKDIYGEIDIKELTR 929
           +   + G   +E+  AIL  +  MA                          E  ++ L  
Sbjct: 447 DRRFLHGVEESERDRAILEGMTHMAHGLGLEVVVEGVER------------EAQLEILRE 494

Query: 930 MGCDYIQDSHVASPL 944
            GCDY+Q   +  P+
Sbjct: 495 SGCDYVQGFLLGHPM 509


>gi|167725501|ref|ZP_02408737.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei DM98]
          Length = 579

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 183/440 (41%), Gaps = 22/440 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++ +ND
Sbjct: 139 EHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFRIVND 195

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++          
Sbjct: 196 TCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVD 255

Query: 642 AMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE----SF 695
                   +  +VTAS+G A            + ++ A +A   AK RG N V+      
Sbjct: 256 GFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHD 315

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW--DHP 747
              +     V     +  A+E  +  L   PI+    +   GL      E L++      
Sbjct: 316 HELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARRGELLLRMGALGE 375

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G      F+  AE   ++  I+ +++  +   +   R +         IN++   + D
Sbjct: 376 REGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGISIGD 432

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDFG+  
Sbjct: 433 ERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGM 492

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +     ++
Sbjct: 493 ASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQ 552

Query: 926 ELTRMGCDYIQDSHVASPLG 945
           +L  +G DY Q  ++  P+ 
Sbjct: 553 KLAALGVDYAQGYYIGRPVP 572


>gi|256380214|ref|YP_003103874.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255924517|gb|ACU40028.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 702

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 114/557 (20%), Positives = 216/557 (38%), Gaps = 13/557 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             +       S   + +       V     +  ILG     + G        +H +D   
Sbjct: 138 EAKFRAVWRTSALAIAEVASDGRVVDHNAALPAILGYPPDRVAGLSA--REVVHPDDLPA 195

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            R +    +   R  +Q E R+  AD +     + I P+   +GD+  Y+ +  D+ E +
Sbjct: 196 LRRLGGQLLSGERDGVQVEKRLVRADGEAIPAQLAITPVRGRDGDVRCYVAVVEDLDEVR 255

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                ++  +  D LTG+ NR  FL  L           +    V ++D+D  + +N   
Sbjct: 256 ALQLQLVRQSLNDPLTGLANRAQFLGWLE---SEEGPQGSGSLVVALLDLDGLRVVNGAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD VL +    +G +      +ARL G+ FG+++   ++   + D      + +A 
Sbjct: 313 GHEVGDRVLRAAVSVLGTVFGGGARIARLGGDEFGVLVTG-SDLPSVLDLVEQALRELAE 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P+   ER I V AS+G  + T   +   E+L+ A +A+  AK  G      +        
Sbjct: 372 PVWWEERGIGVAASVGVVARTGPGLPDGELLRRAGVALDWAKDSGKTGWSLYDPDRDARE 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            DR  +   +    E  +  + Y P+  L D  +V +EA+++WDH + G +       + 
Sbjct: 432 RDRSALAASVAGGAEQGDFRVDYEPVHALADRSVVAVEAVLRWDHAERGLVDLRWLGPLL 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   M   ++ + LER       W          + ++++ +   + EL   ++ ++  T
Sbjct: 492 ERTGMGLRLDRWALERACAQAGRWYAALGEEAPVLSVDLSVRQCQEPELVAWVRQVLRDT 551

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P +++    E +     E     L  L   G+ L LD  G     +  +  +P   +
Sbjct: 552 GLPPHKLRFELPERLPSALSEEQVEELNILASHGVLLALDQLGGGNVAVDRIRQLPLSAL 611

Query: 882 KFN----GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           KF       L  G+     A   +++  ++ +   + A  +    + + L  +G    Q 
Sbjct: 612 KFGGPPVRGLAEGANLVDRAAAVALLSWSRQLGLELHAVHVSTSDEARRLRELGVSAGQG 671

Query: 938 SHV-ASPLGFNSILKLL 953
               A PL    + +LL
Sbjct: 672 VLFNAEPLTGADVAELL 688


>gi|323494886|ref|ZP_08099978.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
 gi|323310850|gb|EGA64022.1| signal transduction protein [Vibrio brasiliensis LMG 20546]
          Length = 572

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 116/580 (20%), Positives = 234/580 (40%), Gaps = 15/580 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           + V  +     Q  + TG     +  +  R    V    D ++            P    
Sbjct: 1   MSVDSVESESTQASILTGAELDELMDNHFRH--VVDVLNDGIFYMSDTEHVCFYNPSFYA 58

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             G+ SG  H  ++NWL  +H  D+      +D  +     R+  ++RVR  + Q+ W+ 
Sbjct: 59  RFGVESG--HTCLQNWLDLVHPLDKVALSERVDEHIQEDESRVTVQYRVRCTNGQYTWLE 116

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                    NG     IG   DI+++K     +  ++ +D  TG+ N      +L   LD
Sbjct: 117 GTA-ITKTVNGH-RFMIGCHKDISDRKLMEMYVQQSSLRDGPTGLSN----EQKLAIDLD 170

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                      ++ I     +    + G  +  ++L  L + +G+       + R+  + 
Sbjct: 171 NIKGVTTQSHHLVYIQAGNARSYQTLYGSQIMRNLLSHLNKTLGKFPDQFVDIYRIQSHD 230

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F I++  + ++  + + A  + K+    +  ++       SIG      + + + E++K 
Sbjct: 231 FAILVRGQYDNDDLKNLAERICKAYQNSVEAIDFLYATDISIGIYPNICNALAADELVKV 290

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A     +A  +  N +  +  ++         I+++L  A++  +L + + PII      
Sbjct: 291 AAKTSQYAATQRDNCIRIYTGNTKSQVDRHFYIEQELGNAIKKRKLSVRFQPIICTKKHA 350

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   E+L++W   + G I   EF+ +AE   +I  +   + +   R I  ++ Q +   I
Sbjct: 351 VASFESLVRWKSDQLGEIYPDEFISVAERKGLISELGYLVFDEACRFINKYQ-QTHTDDI 409

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + +N++   LL  +  + ++ LI K     S I L  +E++++ + + +   L  L ++
Sbjct: 410 RVNVNVSVLQLLSQQFPDALKQLIDKHNVKASSIVLELTETIILDDNKSAIAQLNNLNQL 469

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETT 912
           G  L+LDDFG   S L+    +P   +K + S+   S E  +    L  I  +    +  
Sbjct: 470 GFKLSLDDFGAGYSSLNSFFDLPLSQIKIDKSIAWRSMENPVTFEYLTFITKLCTTYDID 529

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           I+ + I      K  T MG  Y+Q    + PL   S    
Sbjct: 530 IVIEGIENAAMQKVFTDMGASYLQGYWFSKPLSLASASHY 569


>gi|260776100|ref|ZP_05884995.1| sensory box sensor/GGDEF/EAL domain protein [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260607323|gb|EEX33588.1| sensory box sensor/GGDEF/EAL domain protein [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 788

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 205/432 (47%), Gaps = 11/432 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A+  +LT + N++   + +  +++ S         ++   + +++++N  LG+
Sbjct: 341 QAELNYRAYHSDLTKMLNKKKLFEDIADLINKSCDG----FLLIRFRVLEFEELNYSLGL 396

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             G+++ V+   R+   L+      +L  + F  +L   N        A  + + +A   
Sbjct: 397 DTGEELQVAAASRLMA-LEEKAQFYQLESSEFA-LLSQCNTKQSDEHSANVVLQCLAGAF 454

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDR 704
           +L    +TV    G+  +     T+ ++L NA +A+  A K R  +   +  ++    +R
Sbjct: 455 SLQRISVTVHTVSGYCRYPKHGETARQLLHNAGIALQQAMKMRVPSLEFASSMAESAINR 514

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           V +  +L  A++  +L L + P + L   ++  +EAL++W HP+ G I   EF+ IAE  
Sbjct: 515 VRLTHELTEAIQGDQLILHFQPKLNLKTSQVDKVEALVRWIHPELGMIPPDEFIEIAETT 574

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I A+  +++    + +  WR+        + INI++ +L      + +   +S++  S
Sbjct: 575 GQIDALTDWVMRSALQQLQVWRELGFELG--VAINISAVNLKQKNFDDKILTFLSQSDCS 632

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + + +  +ES +  +PE +  +L RL + G+S+++DD+GT  S LS L ++P   +K +
Sbjct: 633 ENEVTIEVTESALAEDPEYALSILSRLSERGLSISIDDYGTGYSSLSQLKHLPATELKID 692

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +    S ++   I +S I +AK      +A+ +  +  +  L   GCD+ Q   ++ 
Sbjct: 693 KSFILNVASDQQDQTIAQSTIKLAKRFGLKTVAEGVEDQASLDWLVANGCDHAQGYFISR 752

Query: 943 PLGFNSILKLLK 954
           P   + +   L+
Sbjct: 753 PQPADKLTSWLQ 764


>gi|167549158|ref|ZP_02342917.1| protein YhjK [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168260648|ref|ZP_02682621.1| protein YhjK [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|205325600|gb|EDZ13439.1| protein YhjK [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205350427|gb|EDZ37058.1| protein YhjK [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 668

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVIARQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYSRAVSAAFTARRKGKNQIQFFDPTQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|254228929|ref|ZP_04922351.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262396724|ref|YP_003288577.1| GGDEF family protein [Vibrio sp. Ex25]
 gi|151938606|gb|EDN57442.1| FOG: EAL domain containing protein [Vibrio sp. Ex25]
 gi|262340318|gb|ACY54112.1| GGDEF family protein [Vibrio sp. Ex25]
          Length = 606

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 198/449 (44%), Gaps = 20/449 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           ++E+  K L  +      DNLTG+ NR    D L T+   +        ++  +DID +K
Sbjct: 162 VSERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFSLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLSSPNNAFRVAGDEFAFITYD----EDPVAVCQEV 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S E++ NA LA+   K      ++ +  
Sbjct: 274 LDKIESGYSDKSNRISFTVSIGIARAPVHMLNSDELILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRV--MIKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E +         ++ ELY+V  PI+ +  +     E L +W+   +G
Sbjct: 334 HLSALYHRRTQLIEAMRIQLSADIHDSEELYVVVQPIVDITSDRWNYFEILARWNSNVYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E          +      + + IN ++ +L+D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIELGERIIELAC-IAKQELEANLGYKVKLSINCSAYELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ K  +      +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YINHLTNMVEKYQHEAKDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +           ++  I  +A+ ++  +IA+ +  +  +++L
Sbjct: 513 LNYIHNYPIDSIKIDATFVQNMLSNTTSEQVVFLIAQLAELLDVDLIAEGVEDDRALQKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
             MGC YIQ    + P   + I+ L+ ER
Sbjct: 573 IEMGCHYIQGYFYSRPHSVDEIVHLINER 601


>gi|260777790|ref|ZP_05886683.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605803|gb|EEX32088.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 591

 Score =  342 bits (878), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 208/550 (37%), Gaps = 13/550 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                    D ++            P           S    +  WL  +H  D+   + 
Sbjct: 48  FKHMFDVFNDGIFYMTDDDRIFFYNPTFYE--NYDIASGQCHLDAWLSLVHPLDKAMLKG 105

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D+ +     ++  ++RVR    Q+ W+      ++ +       IG   DI+++K   
Sbjct: 106 EVDAHIQKDEQKISTQYRVRNKTGQYVWIEGTA--VTKTINGTRFMIGCHRDISDRKLME 163

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   AF+DN +G+ N Q  +  +  ++D        + +++ I I   +      G  
Sbjct: 164 TYVQQAAFRDNASGLSNGQKLIIDIDALVDQLP----GQHSLIYIQIGDIRSYLSAYGPH 219

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +  DV+  L   +         + R+  + F I++     + ++      + ++    + 
Sbjct: 220 ILRDVMSHLITALNSFTDDFIDIYRVRSDDFAILVRGHYTAEELMTLGERISQTYQESVQ 279

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDR 704
                     SIG        + + E++K A      A  K      V S    S     
Sbjct: 280 ANGYMYGTDISIGIFPSFDIGLAAEEVIKVAARTCQFAGEKRHNRVGVYSKETKSKVDRH 339

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+ +L  A+ N  L + + PII      +   EAL++W   + G I   EF+ +AE+ 
Sbjct: 340 FYIERELANAIHNETLTVKFQPIICAKKNRVASFEALVRWRSEEIGEIYPDEFIEVAEKK 399

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +   +  +  + I  + +      I + +N++   LL+++  + ++ L       
Sbjct: 400 GLIVELGYLVFSKACQFIKRYLETHG-TNIRVNVNVSVLQLLNHQFPDRLKRLADHLGID 458

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              I L  +E++++   + +   L RL   G  L+LDDFG+  S L+    +P + +K +
Sbjct: 459 TKNIVLELTETIILDGNKSAISQLSRLSDYGFLLSLDDFGSGYSSLNSFFDLPLNQIKVD 518

Query: 885 GSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S+     +    +  L  I  + +     ++ + I      K  T MG  ++Q    + 
Sbjct: 519 KSMAWRCLDNPATLEYLSFITRLCQAHNVDVVVEGIESAEMQKRFTDMGASFLQGYWFSK 578

Query: 943 PLGFNSILKL 952
           PL   S  + 
Sbjct: 579 PLSIASASQY 588


>gi|152967751|ref|YP_001363535.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151362268|gb|ABS05271.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 863

 Score =  342 bits (878), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 202/448 (45%), Gaps = 36/448 (8%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT +PNR + L  L   L      D +   V+ ID++ +K++ND LG A GD+VL
Sbjct: 316 ASSDPLTNLPNRAALLRHLEVAL-RVTEADGVGTAVLFIDLNGFKQVNDSLGHAAGDEVL 374

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + RR+   L+  D+ ARL G+ F +++     +   A  A  ++  +AMP+    R +
Sbjct: 375 SRVARRLRRCLRGDDLAARLGGDEFALVVRDVEPARAAARIAARVQADVAMPLETHGRTV 434

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR------------------GGNHVES 694
            V ASIG A    S + ++EML+ A+ AMY AK                    G   +  
Sbjct: 435 RVGASIGIAVA-ESGVGAAEMLRRADSAMYRAKAESRTGSPAPSAEATDGSLTGRVVLFE 493

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +      R  ++ DL  AV   E  LVY PI+RL D  +VG EAL++W H   G +  
Sbjct: 494 ADMHDVDRLRRRLEHDLLSAVTGEEFELVYQPIVRLGDGAVVGAEALLRWRHGTRGLLEP 553

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AE    ++ +  ++L         WR+Q   P + I +N+++  ++   + + +
Sbjct: 554 GAFLAGAERSPAVEELWRWVLRTACAQAALWREQV--PDLSITVNLSAAHVMTRGVADDV 611

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT--------- 865
           +  ++     P+ + L     ++  +P+     L +LR  G  + LDDF T         
Sbjct: 612 RRALTAASLDPTALVLDVPADLLAEDPDVLVARLRKLRATGARILLDDFATLRPDGGVLA 671

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE----KRIAILRSIIPMAKNIETTIIAKDIYGE 921
             S L+ L  +P D VK + +L+           +A +R++  +   ++  ++A+ +   
Sbjct: 672 GHS-LAPLRQLPVDGVKLDRTLVAEIDGPDGVDALAAVRTLCELGAALDLGVVAEGVERA 730

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +  L   GC   Q   + +P     +
Sbjct: 731 EQVLLLQEAGCTVGQGVLLGAPRSVEEL 758


>gi|145320434|gb|ABP62581.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 680

 Score =  342 bits (878), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 196/460 (42%), Gaps = 17/460 (3%)

Query: 510 LRYIGIANDITEQKKSLEGIL--CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +  +  + +I +Q+          NA +  ++ +PN+   +  L   +    T       
Sbjct: 229 IGMLVRSYNINQQRLLRHQDELNSNATRFPVSELPNKAFLMALLEQTVARQQTT-----A 283

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +M I  +  +    VL  +  + +L++L  +I  +L    +L ++SG  F I+       
Sbjct: 284 LMAIACETLQDTAGVLKESQREMLLLTLVEKIKSVLAPRMVLTQVSGYDFVILAHGVKEP 343

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                    +   I   + +   ++  +ASIG A +    +T+ ++ + A  A + A+ +
Sbjct: 344 WHAITLGQQVLTVINERLPVQGIQLRPSASIGLAMYYGD-LTAEQLYRRAFSAAFTARRK 402

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N ++ F        +  +  + D+  A++N++  L   P + L   E+   EAL++  
Sbjct: 403 GKNQIQFFEPEQMEKAQRRLTEESDILTALDNNQFALWLQPQVNLETGEVKSAEALLRVQ 462

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P          +   E   ++  +  ++LE   R + +W+++    P  + +N+++  L
Sbjct: 463 QPDGSWELPEGLIERIESCGLMVTVGYWVLEESCRQLSAWQERGIEMP--LSVNLSALQL 520

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +   +   M  LI++    P  + L  +ES  + +P  +  +L  LR  GI + LDDFG 
Sbjct: 521 MHPTMVSEMLELINRYRIKPDTLTLEVTESRRIDDPNEAVAILKPLRNAGIRIALDDFGM 580

Query: 866 KCSLLSYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
             + L  L +   +P D +K + + + G      +++ +II MA++++  +IA+ +  E 
Sbjct: 581 GYAGLRQLQHMKTLPVDVLKIDKTFVDGL-PDDSSMVEAIIQMARSLDLHVIAEGVETEA 639

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSIL-KLLKERFPLVK 961
               L + G +  Q    A  +  +    + L       K
Sbjct: 640 QRDWLAKAGVESGQGFLFARAVPPDEFEKRYLTAENTPAK 679


>gi|325924962|ref|ZP_08186388.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas
           perforans 91-118]
 gi|325544625|gb|EGD15982.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas
           perforans 91-118]
          Length = 618

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 199/480 (41%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  I   P    +   +  +    D+   +          ++D  TG+P
Sbjct: 126 LKLRDGHSIGTLCVIGTSPREGLDAAAITQLEGLRDLAVLRVENLRSTT--YRDGPTGLP 183

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + L T L  S  D     T + ID+   D ++ +   LG    D  +    RR+
Sbjct: 184 NRARFSEDLDTWL--SQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRL 241

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +L RL    FG +  +E    ++A     + K+   P+       T  ASIG
Sbjct: 242 AAYLPGGTLLYRLDPTTFGFLAQAEG--QRLATLCTKVAKAFTEPLEHQGIPHTAVASIG 299

Query: 660 FASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             S      +  T   +  + ++A            E     + R+   ++         
Sbjct: 300 AVSLQSSYGAADTIRSLTTSVDIARERCLPWS--LYERKHDVAQRNTFRLLAALPAALDS 357

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            S+L L + P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 358 ASQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVID 417

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES 
Sbjct: 418 NGIAQAARWQQQGLD--FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESA 475

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +P+     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +    +   
Sbjct: 476 MIRHPDHLAEQLATIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRT 535

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 536 DRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLE 595


>gi|197249305|ref|YP_002148543.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213008|gb|ACH50405.1| protein YhjK [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 668

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYSRAVSAAFTARRKGKNQIQFFDPTQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|94496980|ref|ZP_01303554.1| diguanylate cyclase/phosphodiesterase [Sphingomonas sp. SKA58]
 gi|94423656|gb|EAT08683.1| diguanylate cyclase/phosphodiesterase [Sphingomonas sp. SKA58]
          Length = 678

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/596 (21%), Positives = 259/596 (43%), Gaps = 43/596 (7%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD- 426
              L+       +       Q ++      QG     +R        GD ++ W +  D 
Sbjct: 114 THFLLAPFSPDGLRAVLLSAQRLVERLGGEQGARHRAQRIRR-----GDALY-WQLGSDG 167

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRV 485
            +  +  +A  L L + ++       + ++   +R    T L +     R   L +    
Sbjct: 168 LLRVSDALARHLALDAPTLA--PAALVRHLPRAERIGVLTALRAMARTGRPASLAHGLPE 225

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R  D   H + I        +G +   +   +D  E+         ++ +D LTG+ +RQ
Sbjct: 226 RPGDRLVHHLRI-------EDGQVAADVEWLSDQHER--------DSSSRDYLTGLRSRQ 270

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK- 604
           + LD L            L  T++++ I +++++N   G  VGD +L  + RRI  ++  
Sbjct: 271 AALDWLD-------RRTGLPTTILLLSISQFERMNAAYGQVVGDALLGRIARRIERMVDD 323

Query: 605 --FPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
                ++AR++G  F + L  E  N  +    A  +  +I  P +  +  I + A  G A
Sbjct: 324 VAPGAMVARIAGTEFLVGLAGEQGNGDRATFLARQLISAIGRPFSAGDHLIRLIARCGIA 383

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSE 719
               S+  ++ +L+ A +A+  A+  GG  +                ++ DL LA++  E
Sbjct: 384 QA-RSEDDATHLLRRAGMALADARQAGGEGIRILSAEKQSRQVDPDRLETDLRLALDRGE 442

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + +V+ P   +  E I G+EAL +W+HP +G + +      AE    +  ++  +L    
Sbjct: 443 ICIVFQPQYPVNSEIISGVEALARWNHPHYGPLGAGILFATAERSDYMLPLSAHILGEAL 502

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R   +W    +   + + IN+ + D+   +    +  ++ ++ +  +R+ +  +ES ++ 
Sbjct: 503 RQAAAWPRALSG--LRLSINVTAADIAQPQFMPDLLDMVDRSGFPRARLTVEITESGLIH 560

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           + + +  LL  LR  G+++ +DDFGT  S L+YL  +P D +K +  L      T +   
Sbjct: 561 DVDAAAALLRALRTEGLAVAIDDFGTGYSSLAYLKSLPLDYLKIDSGLAQDIAGTARDRI 620

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+R II MAK++   +IA+ +  E  +  L R GCDY Q    ++ +    ++ L+
Sbjct: 621 IVRGIIHMAKSLGLKVIAEGVETEEQLDLLAREGCDYYQGFLRSAGISSAELVALV 676


>gi|260429820|ref|ZP_05783796.1| diguanylate cyclase [Citreicella sp. SE45]
 gi|260419303|gb|EEX12557.1| diguanylate cyclase [Citreicella sp. SE45]
          Length = 809

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 133/721 (18%), Positives = 279/721 (38%), Gaps = 32/721 (4%)

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARIT 314
               + L  +   +   ++H  +        +   +   ++L  +  +   +   ++  +
Sbjct: 77  WVVLVLLMIARAAYRHRFVHQWQKRHTASVASIGKLVVFSMLLGLV-WTYPLLKFVSHNS 135

Query: 315 LASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
           L  I              G     + + A   + ++ + +  AI   L   +  P L+  
Sbjct: 136 LEEIGFIGALTSGIIAAGGLALYPVPLAALAYVAVFAVAVPPAIFIGLPA-LAVPFLLIT 194

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD------IVWDWDIVRDRV 428
               +++      Q  +    ++Q + ++ +   L +L   D       +W      D V
Sbjct: 195 CSFFLMITAALHRQLRIFAHEYAQKLRAESQISLLDLLIGNDHERHDNCIWQTRGNLDLV 254

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIH------INDRDN-FRTILDSFVGYRRGRLQY 481
           T+   +  ILG+   +M G  RN    +       + D D      L            +
Sbjct: 255 TSDVPVRRILGV--DAMPGHPRNLSALLELSRLGGVTDADRCTLAQLSRRNAAPPESFCF 312

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
                   ++   + I  R  +    + + + G   D+T++  ++  +   A  D +TG+
Sbjct: 313 RVGDVGRVSRPRTLEIGGRCATLEGREGVYFNGYIKDVTDEAAAMAEVQRLASHDAMTGL 372

Query: 542 PNRQSFLDRLTTILDLSATD-DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           PN + FL R+  +   +     N +  V  +D D  K  ND  G AVGD +L ++  R+ 
Sbjct: 373 PNYREFLTRVAALCGGAQAGASNSQLGVFFVDADNLKWSNDTFGYAVGDALLTTMACRLA 432

Query: 601 ELLKFPDILARLSGNR--FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
                  +  R  G+   F  +     +          M+  +        R   +T ++
Sbjct: 433 SFAGATGVTCRKGGDEYLFAGLFP---SRRAFERHGAEMQAVLNESFVHDGRVFGLTCTL 489

Query: 659 GFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           G +         +E+L+ AELA+    AK RG     S  ++  +   + + EDL  A+ 
Sbjct: 490 GASCGPVGGKEIAELLREAELALRANKAKRRGQVGFFSEGLAQRKRRSMGLAEDLRAALR 549

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +  + L + PI+   D  I  +E+L++W HP  G ++  E + +     ++  I   +L 
Sbjct: 550 DGGIELEFQPIVSGGDYRIRAMESLLRWRHPVLGPVNPREVIELGTSEGLLGEIGEHVLR 609

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           R       W  +     I + +NI   +    +  E +   +       +R+ +  ++S 
Sbjct: 610 RSIELAADWPAE-----IAVSVNICPWEFERPDFAERVLGELLGRSMPTARLFIEITDSE 664

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEK 894
            +         + RLR+ G+++ LDDFG+  + ++ L     D +K + SL+    S   
Sbjct: 665 SLSQSRAVLDNIARLREAGVTVALDDFGSCYACIASLARSDCDIIKLDRSLIRDCESHAT 724

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
             +I+ S++  A+     ++A  I  E  ++ L R G DY+Q   +  P   + +++LL+
Sbjct: 725 ARSIIHSLVETAQADGRAVVAGGIETEGQLRVLERAGVDYLQGYFLHLPQRADEVVRLLR 784

Query: 955 E 955
           +
Sbjct: 785 D 785


>gi|254974973|ref|ZP_05271445.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255092361|ref|ZP_05321839.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314101|ref|ZP_05355684.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516779|ref|ZP_05384455.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|260683035|ref|YP_003214320.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686633|ref|YP_003217766.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209198|emb|CBA62451.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212649|emb|CBE03694.1| putative signaling protein [Clostridium difficile R20291]
          Length = 744

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 188/428 (43%), Gaps = 18/428 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+     +   +       N+   +M+++ID +K  ND+ G  VG+++L++LT+ +  
Sbjct: 41  PNREFMYQYIDDCISK-----NIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLH 95

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREIT--VTAS 657
            +     I+A L G  F I+L + +N       A  +  S  + I L  E+EI   VT S
Sbjct: 96  FIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESSRELKIRLPNEKEIYSNVTFS 155

Query: 658 IGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MIKEDL 711
           IG   W      T+  +      A+  AK  G N    F                   ++
Sbjct: 156 IGSTIWNGEPNMTTLILFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEI 215

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              ++  ++ + Y P+  + +  IVG EAL +W HP  G ++  +F+ + E+  +I  ++
Sbjct: 216 SHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELD 275

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E   ++I  W D  N   + I  N +     +      ++ +  K   S S   + 
Sbjct: 276 LHLFEENCKNIRRWID-NNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIE 334

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG 890
            +E++++ N       L  LR  G S+++DDFG+  S    L  +PFD +K +   +   
Sbjct: 335 ITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHN 394

Query: 891 STE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + K   IL SII +A+ +    + + +  E  ++ +  + CD  Q  + A P+     
Sbjct: 395 LNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEF 454

Query: 950 LKLLKERF 957
            KLL +  
Sbjct: 455 EKLLSKEN 462



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 417 IVWDWDIVRDRV--TTTPDIATILGLASGSMHGPI-RNWLPYIHINDRDNF-RTILDSFV 472
            +  +D+  D +      ++  I+G       G +  N    +H +D D   +  LD   
Sbjct: 632 GIIRYDLFGDMIITYMNEEMFDIIGYTKEQFFGEMGGNLRAIVHPDDLDFVYKKSLDMID 691

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             +       +R    D Q   ++     +S  +G  +   G+  D+ + K   +
Sbjct: 692 TNKIEPFL--YRFIKRDGQIVTVMYTQCNLSAIDGRSI-AQGMYVDVNKIKNLTK 743


>gi|254491839|ref|ZP_05105018.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463317|gb|EEF79587.1| cyclic diguanylate phosphodiesterase domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 766

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/444 (21%), Positives = 193/444 (43%), Gaps = 21/444 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  + I   A  D LTG+ N  +   +L   L       N    ++  +I  +++IND 
Sbjct: 318 KQREDEISYQATHDILTGLMNSHTLQKQLQNYLK-----PNQELLLVAFNIHNFRQINDR 372

Query: 583 LGIAVGDDVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           LG  + +  L  ++ R+  +      + AR+ G  F +IL   +         + + + +
Sbjct: 373 LGSDIANACLRMISARLKSIKTVDIQLAARMEGVEFFVILSPLSGHSPNQVVEMFLTE-L 431

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                +L+  I +  + G   +    + SS+ML+   +A+  A   G   +  +      
Sbjct: 432 ENDFVVLDLNIKLDLNAGITLYPEHGVHSSKMLRRTSIALDAA-RNGKQRIHYYETGEDE 490

Query: 702 SDRVMI--KEDLCLAVENS---ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +    I   E L   +      EL+LVY P + + D++ +  EALI+W       IS   
Sbjct: 491 AHLQRISMIESLRKVLLEGGKGELFLVYQPKLSINDKQYIKTEALIRWRREDNTFISPEV 550

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI--LINIASKDLLDNELCEGM 814
           F+ +AEE  +I  +  +++  +   +  W        +FI   IN++++DL  +     +
Sbjct: 551 FVNLAEEASLIVDLTNWVVRGVLEQVRQWHSDG----LFIGAAINVSAQDLASSHFETFI 606

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
               +    SPS I +  +E  +M +     + L  L ++G  + +DD+G   S LS L 
Sbjct: 607 SETCAGVGVSPSYITIEITERDIMHDEASVVMSLRSLSRMGFVIAIDDYGIGQSSLSKLK 666

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +       K   I++S I +A  +   ++A+ +  E  ++ L +  C
Sbjct: 667 GLPVDEIKLDKSFIMHLDESPKDQLIVKSTIELAHGLGFEVVAEGVENEASLEILKQYHC 726

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D +Q  + + P+   ++ +  K+ 
Sbjct: 727 DQLQGYYFSKPIAAEAVSEWHKDH 750


>gi|254474914|ref|ZP_05088300.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. R11]
 gi|214029157|gb|EEB69992.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. R11]
          Length = 514

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 205/437 (46%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+  R  F + +T  +  SA +  LR  V ++++D +K +    G    D ++  
Sbjct: 72  RDRLTGMLLRDGFEE-VTCEIYDSAAESGLRSAVFMVELDDFKDLAQRHGQETADMLVNR 130

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLEREI 652
              RI  +L+  D +AR+S +RFG+ L      +       A  ++ +I  PI++    +
Sbjct: 131 CGDRILSILRPQDSVARISDSRFGVCLTPVLQMDLELAIQLAGRLQTAIEEPISVDGVSV 190

Query: 653 TVTASIGFASWTSSKITS-SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            V+ SIGF     +   + S+ +  A  A+  A+  G + + ++     +  +    +KE
Sbjct: 191 YVSCSIGFCLHGRAPKPAGSDWINAATTALMEAQTNGPSGIRAYTEDMDKRGKARGDVKE 250

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+E+ ++   + P I      + G EAL +W+HP  G I    F+   E+  +++ 
Sbjct: 251 ELVNALESGQIQAWFQPQICTDTGRVSGFEALARWNHPVRGMIPPMSFLPALEDAGLMER 310

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  ML      + +W       P  + +N A+ +L +  L E +Q  + +   +P R+ 
Sbjct: 311 LSEIMLYNALTALKAWDAAGLNVP-SVGVNFATDELRNVNLVERIQWELERFGLTPDRLC 369

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L ++G ++ LDDFGT  + ++ +       +K + S +
Sbjct: 370 VEILETVMTDQPDDMIVRNIAALGELGCNIDLDDFGTGHASIAAVQRFRVSRIKIDRSFV 429

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ ++   +A+ +    +   L ++GCD++Q   +  P+ F
Sbjct: 430 MKADRDPEQQKLIAAILTMAERLDLATLAEGVETVGEHALLAQLGCDHVQGFGIGRPMPF 489

Query: 947 NSILKLLKERFPLVKNT 963
           +  L  +      +++ 
Sbjct: 490 DQTLDWIAAHEAKLQDA 506


>gi|154496911|ref|ZP_02035607.1| hypothetical protein BACCAP_01204 [Bacteroides capillosus ATCC
           29799]
 gi|150273869|gb|EDN00982.1| hypothetical protein BACCAP_01204 [Bacteroides capillosus ATCC
           29799]
          Length = 1428

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 215/558 (38%), Gaps = 40/558 (7%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
             + D  + +D+  +++  + +I     L   G  +   + W   ++  D    R   + 
Sbjct: 29  ESTSDHYFFFDLKANQIHFSKNIGKNYPLMEHGQEYVTPQEWCRIVYPQDLPILRESYEK 88

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
             G  +   + E+RV        W+  R +   +  G  L  IG  +++    ++     
Sbjct: 89  LRGGEKQIHRLEYRVINRRGDVVWISSRGKSQLDQQGRPLWVIGCISEVATNSRA----- 143

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D  +GI            +L            ++++ +D  K IN   G   G+ 
Sbjct: 144 -----DGFSGIFGMNQLKRESRELLA-----GERDGFLLLVGVDDLKSINLKQGREQGNA 193

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF--AIAMRKSIAMPINLL 648
           VL  +   +         + R +G+ F + L   +     A F  A  + + +       
Sbjct: 194 VLRRVADALEHAADGKRRIYRTNGDCFAVNLPDADAKQAAAVFNRAQRLLEGL------- 246

Query: 649 EREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
                 T S G   +       +  + + AE  + HAK +G N +  F    +  +   +
Sbjct: 247 -----CTLSGGCVPFREYMVPDAETLYQYAENTLDHAKAQGKNRLMFFSSEDYEKEIATL 301

Query: 708 K--EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +  EDL  +V        L Y P +      + G EAL+++  P+ GN+  SEF+ I E+
Sbjct: 302 ELKEDLTKSVREGFRGFSLCYQPQVLSGTYRLYGAEALLRYTSPRRGNVPPSEFVPILEQ 361

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  + +++L+       +WR Q   P   I IN++   L +  + + +   ++++  
Sbjct: 362 SKLICPVGIWVLDTALEQCRAWRKQ--EPDFHISINVSYTQLCEENIVQKVLDAVNRSGL 419

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               + L  +ES+ + +      L  + +K GI +++DDFGT  S L  L  +  D +K 
Sbjct: 420 PGDAVTLEITESMQLLDYPHINELFLQWKKSGIEISVDDFGTGYSSLGRLKELEIDEIKI 479

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +           +L +++ +A + +  +  + +  E ++  L  +    +Q    +
Sbjct: 480 DRCFVNNIQHSVYNYRLLGNMLELADSCQIRVCCEGVETEDELTALEELHPALLQGFLFS 539

Query: 942 SPLGFNSI-LKLLKERFP 958
            P     +  + L+   P
Sbjct: 540 KPCTPEELEERYLRPDSP 557



 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 97/251 (38%), Gaps = 13/251 (5%)

Query: 450  RNWLPYIHINDRDNFR-----TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            +     +   + +  R      I +  +       ++ +R R      HW+ + I     
Sbjct: 1179 QQLASMLPEAELERLRRYRHPAIWNEMLARGETSSRFCYR-RPVGETLHWVELTIYLFRE 1237

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
                    +    DI  +K+          +D LTG+ NR +F   +   +         
Sbjct: 1238 DTTRNAYTLIYLKDINAEKEREFAQAQAVDRDPLTGLYNRTAFEREVKRCVSECEQSP-- 1295

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
               ++++DID +K+IND +G   GD  L ++ R +    +  D++ RL G+ F + +   
Sbjct: 1296 CGVLLMMDIDNFKQINDKMGHLEGDKALQTVARVLTSTFRQEDLVGRLGGDEFLVFIKGG 1355

Query: 625  NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                ++     ++  ++           ++T SIG     +      + L+ A+LA+Y +
Sbjct: 1356 IRRERLEQRVDSLLSALER-----TPGPSITGSIGLTYVCNPDFEYDDYLRRADLALYES 1410

Query: 685  KHRGGNHVESF 695
            K +G N    +
Sbjct: 1411 KRQGKNRFRFY 1421



 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 398  QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL--PY 455
             GI +D ER  L        V++++ V   +    +   +LG  +       + W+    
Sbjct: 994  HGIVNDMERPKLVPESCVRDVFEYNAVEKTMFFHTERTLLLGEEAHE-SDFPQCWIDSEI 1052

Query: 456  IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            +H +  ++FR+     +  + G  + E  +++    + W  +  + +          I +
Sbjct: 1053 VHPHFVEHFRSAFSR-LHRKEGNERQELLLKSKSGTYEWFKLTTQWLDREEKGQEAAIAV 1111

Query: 516  ANDI-TEQKKSLEGILCNAFQ 535
               I  ++   LE +    F 
Sbjct: 1112 LEPIGNDRVMELEYMRIRKFY 1132


>gi|313898485|ref|ZP_07832022.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312956867|gb|EFR38498.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 740

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 192/441 (43%), Gaps = 11/441 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ + I    F D+LT   N   F   +  +LD    D      ++  D+  +K +N+
Sbjct: 303 RVRNEKKIDKVVFYDDLTSHYNYNKFRMDVQMLLDKGQAD---SYALIEFDVSDFKLLNE 359

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD +L++  R   E     +  AR+S +RF I+L    ++  IA    A+ +++
Sbjct: 360 LYGYQGGDQLLITTMRLCEENCSADERCARISADRF-IVLWEMRDTDSIASRYAALMEAV 418

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA--MYHAKHRGGNHVESFRVSS 699
              +     +       G     ++    S        A  +  A+ +      S ++  
Sbjct: 419 QEDMRKQREQFKADFYAGVYLLQNTDREFSPCHDRCMHAKMLGKAEKKQRCTFFSEKMYD 478

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               +  ++  +  A+++ E  +   P + L D+ +   EAL++WD P +G I    F+ 
Sbjct: 479 TMLYQKRLEGQMEQALQHKEFKVFLQPKVTLRDDIVHSAEALVRWDSPIFGMIPPMAFIP 538

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+   ++ ++++M++ + + +  W      P + I IN++   +        +  ++ 
Sbjct: 539 LFEKNGFLEQLDMYMMDEVCQLLKKWEQTY--PSLRISINVSRMYIFRPGFARRVLEIVE 596

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   S  ++++  +ESV+         ++  LR  G  +++DDFG+  S L+ L  IP D
Sbjct: 597 RNGVSTKQLEIEITESVIFDRSLVLFAIIQELRSYGFRISMDDFGSGYSSLNMLKDIPID 656

Query: 880 TVKFNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           T+K +        G+T++   I+  ++ +AK +    +A+ I    ++  L   GCD IQ
Sbjct: 657 TIKLDQVFFQTNHGNTQRARDIVGGVLSLAKTLGIHSVAEGIEEADEVVFLKEHGCDEIQ 716

Query: 937 DSHVASPLGFNSILKLLKERF 957
             + + PL        +  + 
Sbjct: 717 GYYYSKPLCVEDFEAYICRQN 737


>gi|239628018|ref|ZP_04671049.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518164|gb|EEQ58030.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 565

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 190/436 (43%), Gaps = 16/436 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  S EG+L  + +D LTG+ NR+        ++D      +     +  DID+++  N 
Sbjct: 134 RIPSYEGLLYMSERDRLTGLYNREKMFAETRRMID---RHMDTLFVFLRFDIDRFRLYNA 190

Query: 582 VLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           V G   GD +L+++   I  +          R++ + F I      +  ++      +++
Sbjct: 191 VFGELRGDKLLITMAEIIEGIAGCFEFSTYGRINADTFCICEPY--DCERLHMQVQMVKE 248

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS- 698
            +A      E+   +  ++G        +   EM   A +     K++  +++  + +  
Sbjct: 249 GLAGF----EKNYLLEPTVGAYIVEEPDLAVEEMYIRAFIGSKKCKNKFASYLGFYDMDE 304

Query: 699 -SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                +   I   +  A++  +  + + P   + ++  +G EAL++W HP  G +    F
Sbjct: 305 GIREVEEAAIVSSMQTAMDEEQFVVYFQPKFDIANDRDIGAEALVRWKHPDTGLMPPKHF 364

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E+   I  ++ ++ E + + I  W          I +NI+   L +  L + +  L
Sbjct: 365 IPIFEKNGFISRLDYYVWEHVCQLIHKWLGDGICLD-PITVNISRISLYNPRLADILSGL 423

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +       + L  +ES  + +PE  +  + +L + G  L +DDFG+  S L+ L  I 
Sbjct: 424 IEQYGVPIGLLNLEITESAYVSDPELIQEAVRKLHQAGFILLMDDFGSGYSSLNMLKDID 483

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   ++G  S  K   IL S+I MA N+   +I + +  +   + L ++GC+Y+
Sbjct: 484 VDVLKIDMQFLSGGESPGKGKIILESVIQMANNLGMPVIMEGVETQEQKRFLYKIGCNYV 543

Query: 936 QDSHVASPLGFNSILK 951
           Q  + A P+      K
Sbjct: 544 QGYYYARPMPQEEYEK 559


>gi|260775720|ref|ZP_05884616.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608136|gb|EEX34305.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 559

 Score =  341 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 106/559 (18%), Positives = 229/559 (40%), Gaps = 18/559 (3%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              +G+     +         + +W   +         D      +        + +W+ 
Sbjct: 2   EAHEGLLDQRVKLLNVFDTGSEGLWLMRMNGRIRYYNDDFYHQFDIVQED--ADVEDWIR 59

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            IH  D + FRT +      +  R+  E+RV+    Q+ W+      M +  G     +G
Sbjct: 60  LIHPLDIETFRTQMHHHAMAKEERVVSEYRVQNRQGQYLWIEASGVMMVDEEG--AFMVG 117

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL-DRLTTILDLSATDDNLRPTVMVIDI 573
              +I+++K   + +   A+ D ++G+ NR     D L   +DL          ++ + I
Sbjct: 118 CHRNISDRKLMQDYLYQTAYFDPVSGLMNRNKLRVDLLEERVDLEGQ-------ILQLAI 170

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            +    +   G +V D+ + ++   + +         RL    + +++    +   +   
Sbjct: 171 QRSHLYSRQYGQSVEDEFVSAIHAFMLKQNLESYTFYRLKSGVYAVLMSMNMSVNALRAL 230

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNH 691
           A+ MR   A   +  +  +    +IG      +  ++ + L+  +    +A  +  G   
Sbjct: 231 AMKMRVFFADFGSSSKIFVGDELAIGGVFICQT-TSAEKTLEILDKTCDYAGRQCAGRVA 289

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +    V         I+E L  A+E+ ++ +   PI        V  EAL +W HP  G+
Sbjct: 290 IYHGEVQQHIERFFTIQESLKSAIESQQISIALQPICLAGSMRTVSYEALARWTHPDIGS 349

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++  EF+ +AEE  +I A+ L +LE+  + +    D+   P I + +N+++  ++ ++  
Sbjct: 350 VTPDEFIPLAEEQGLIHALGLSVLEQACQFLS-MSDRQGQPAIKVNVNVSALQIMRHDFA 408

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           +    ++ +      RI L  +ESV++   E     L RLR +G  L+LDDFG+  S + 
Sbjct: 409 KKAMQVLRRQGLPAERITLEITESVLLDADESIVKKLYRLRALGFQLSLDDFGSGYSSVY 468

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L  +PF+ +K +  +++ +   R   A +R +  + +     I+A+ +  +  I +   
Sbjct: 469 GLFNLPFNQIKIDKLIISEAQHNRSCQAFIRFLTDLGEVNGIDIVAEGLEHQHQIDQCAT 528

Query: 930 MGCDYIQDSHVASPLGFNS 948
           +   ++Q   +  P     
Sbjct: 529 LNVSHLQGFAIEHPAAITQ 547


>gi|309775981|ref|ZP_07670973.1| putative sensory box-containing diguanylate cyclase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916263|gb|EFP62011.1| putative sensory box-containing diguanylate cyclase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 740

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 93/441 (21%), Positives = 187/441 (42%), Gaps = 11/441 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + ++ + I    F D+LT   N   F   +  +LD           ++  D+  +K +N+
Sbjct: 303 RMRNEKKIDKVVFYDDLTSHYNYNKFRMDVQLLLDKGL---GKDYALIEFDVSDFKLLNE 359

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD +L++  R   E     +  AR+S +RF I+L    N   IA+    +   I
Sbjct: 360 LYGYQGGDQLLITTMRLCEENCTHDERCARISADRF-IVLWKMRNRESIAERYDMLMFKI 418

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              +     +       G      +    S        A    K     H   F    + 
Sbjct: 419 QEHMRKQREQFKADFYAGVYLLQEADREFSPCHDRCVHAKTLGKSEKKQHCTFFSEEMYA 478

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           +      ++  +  A++N E  +   P + L D  +   EAL++WD   +G +   +F+ 
Sbjct: 479 TMLHQKRLEGQMEQALKNKEFKVYLQPKVTLCDGIVHSAEALVRWDSSMFGMLPPYQFIP 538

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E    ++ ++++M++ + + +  W+D    P + I IN++   +      + +  ++ 
Sbjct: 539 LFERNGFLEQLDMYMMDEVCKLLKGWQDTY--PSLRISINVSRMYIFRPGFAKRVLDIVE 596

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   S  ++++  +ESV+         ++  LR  G  +++DDFG+  S L+ L  IP D
Sbjct: 597 RNAVSAQQLEIEITESVIFDRSTELFAIIQELRSYGFRISMDDFGSGYSSLNMLKDIPID 656

Query: 880 TVKFNGSLM---TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           T+K +        G+T++   I+  ++ +AK +    +A+ I  E ++  L   GCD IQ
Sbjct: 657 TIKLDQVFFQTNHGNTQRARDIVGGVLSLAKTLGIHSVAEGIEQEDEVAFLKAHGCDEIQ 716

Query: 937 DSHVASPLGFNSILKLLKERF 957
             + + PL        + ER 
Sbjct: 717 GYYYSRPLCVKDFEAYIHERN 737


>gi|307295473|ref|ZP_07575309.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
 gi|306878512|gb|EFN09732.1| diguanylate cyclase/phosphodiesterase [Sphingobium chlorophenolicum
           L-1]
          Length = 678

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 137/651 (21%), Positives = 271/651 (41%), Gaps = 63/651 (9%)

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           I    M+G     + + A ++  +   G  + +     +    P L+       ++  FT
Sbjct: 63  IALVDMRGARDGDVRLIASLVPAVDAGGGALVVLVDAQHIAAVPGLLEAGATHFLIAPFT 122

Query: 386 VIQHVLATGYFSQGIFSDG----------ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
               + AT   +Q +              +R        GD ++ W+   + V  + ++A
Sbjct: 123 -PGELRATLASAQRLVDRLVGGATHSRRAQRIRR-----GDALF-WEREGEAVRLSDNLA 175

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
             LG+   S+      ++  +  ++R +    L   +   R                   
Sbjct: 176 RHLGIEGRSIG--PAGFIRRLPRSERRSVIAALRGMMRSGRP------------------ 215

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF------QDNLTGIPNRQSFLD 549
                      GD  R +     I     +    L +A       +D+LTG+ +R++ LD
Sbjct: 216 EAFAHAAPGRPGD--RLVHHLRLIEGVVAADVEWLSDAHGPDETGRDDLTGLRSREAALD 273

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF---P 606
            L            L  TV+++ I ++ ++N   G  VGD +L  + RRI  +       
Sbjct: 274 WLE-------RRKGLATTVLLLSISQFDRMNAAYGQVVGDALLGRIARRIERMTVDMAAE 326

Query: 607 DILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            ++AR++G  F I L  E   + K    A  +  +I  P +  +  I +TA  G A   S
Sbjct: 327 AMVARIAGTEFLIGLTGEAATAEKATFLARQLIGAIGRPFSAGDHLIRLTARCGIAQSRS 386

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLV 723
               ++ +++ A  A+  A+  GG  +  F             ++ DL LA+   E+ ++
Sbjct: 387 D-DDATRLIRRAGTALADARVGGGEGIRIFSSEKRSRQVDADQLETDLRLALHRGEIAIL 445

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P   +  E++VG+EAL +W+HP++G + +      AE    +  ++  +     R   
Sbjct: 446 FQPQYPVGGEQMVGVEALARWNHPQYGALGAGMLFATAERSDYMLPLSAHIQAEALRQAA 505

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           +W    +   + + IN+ ++D+           L+  + +  SR+ +  +ES ++ + + 
Sbjct: 506 AWPRALSH--LRLSINVTAEDIAQPGFMPQFLNLVDMSGFPRSRLTVEITESGLIEDVDN 563

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +  LL  LR  G+++ +DDFGT  S L+YL  +P D +K +  L      T +   I+R 
Sbjct: 564 ATALLTALRAEGLAVAVDDFGTGYSSLAYLKSLPLDYLKIDSGLAQDIAGTARDRIIVRG 623

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +I MAK++  ++IA+ +  E  +  L+R GCD+ Q    ++ +    ++ L
Sbjct: 624 VIHMAKSLGLSVIAEGVETEQQLDLLSREGCDFYQGFLRSAGVSSADLVAL 674


>gi|307719807|ref|YP_003875339.1| hypothetical protein STHERM_c21360 [Spirochaeta thermophila DSM
           6192]
 gi|306533532|gb|ADN03066.1| hypothetical protein STHERM_c21360 [Spirochaeta thermophila DSM
           6192]
          Length = 532

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 105/454 (23%), Positives = 195/454 (42%), Gaps = 23/454 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKI 579
           + K++ E          +TG+PN       L  IL  S  +      + ++ +D+ Y  +
Sbjct: 69  KHKRAKEIAEYKLSIHPVTGLPNHYRMSQDLPFILRKSQEEHQ--VALFIVKLDRSYNML 126

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +  L   + + +L     RI +L+   + L     + F ++  +     +I   A  + +
Sbjct: 127 SKTLKPTMTEWILYQTGMRIAQLVGTENHLYHTREDEFIVVATTLTTEEEIISLAREISQ 186

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
           ++  P       I++ + IG A +         +L NA++AM +A  +     +    + 
Sbjct: 187 TVKRPHIFSGYHISIGSYIGIALYPDHGFNKHTLLHNADIAMEYAMEQNTSFEIFKDELR 246

Query: 699 SFRSDRVMIKEDLCLAVE-------NSELYLVYHPI--------IRLMDEEIVGLEALIQ 743
               +R+ +++ L  ++E         +  L + PI         R     I   EALI+
Sbjct: 247 ERVVERMDLQQFLIKSLEAQAILEIKKQFDLFFQPILTLEPTGEKRWRITRIDA-EALIR 305

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +  ++F+ +AEE  +I  +  ++L   A  +  W    +  P+ I INI+  
Sbjct: 306 WHHPTKGLLLPNKFIPVAEETGVIMLLGTWVLYTAADTLREWEILGSRKPL-ISINISPV 364

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              +  L E +  ++       S + L  +E+VVM +P  S   + R+R+ GI   LDDF
Sbjct: 365 QFANTNLEESIAKVLESREIDTSHLMLELTENVVMQDPMESIKKMQRIREYGIKFALDDF 424

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P   +K + +    + E     AI+RS+I +A+ +   +IA+ +  E
Sbjct: 425 GTGYSSLNYLKSFPISYLKLDRTFFKDTPENAYDKAIVRSVITLARELSLGVIAEGVETE 484

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + L   GC  IQ    + P    S L  ++ 
Sbjct: 485 AQCEFLLEEGCTTIQGFLFSRPRDSESFLHFVQN 518


>gi|225019912|ref|ZP_03709104.1| hypothetical protein CLOSTMETH_03866 [Clostridium methylpentosum
           DSM 5476]
 gi|224947276|gb|EEG28485.1| hypothetical protein CLOSTMETH_03866 [Clostridium methylpentosum
           DSM 5476]
          Length = 704

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 206/511 (40%), Gaps = 47/511 (9%)

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI-------ANDITEQKK 524
           +   R     E+ + A       +   +      +G ++ Y+G+         +IT    
Sbjct: 210 LEEIRESNPAEYAILAGQG----ITSLVAAPLERDGRLIGYLGVDNPPQEKVRNITSLLH 265

Query: 525 SLEGILC--------------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           +L   L                ++ D LTG  NR  +   +  +   S         ++ 
Sbjct: 266 TLRYFLMSSLRRSEDEKLLIRLSYYDTLTGFYNRNRYNQDMERLASRSG-----PFGILY 320

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +DI+  K IND  G   GD +L+   ++I E+    D + R+ G+ F ++    + +   
Sbjct: 321 LDINGLKDINDHYGHDYGDQILIECAQQIAEVFPDAD-IYRIGGDEFIVLCAPISENKFQ 379

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GG 689
                  +     P        +  A+IG+  W+ +     +++  A+  MY  K +   
Sbjct: 380 DTVLELKKGFALHP--------SCHAAIGY-QWSDNVSNVQQLISIADAMMYEDKKKFYR 430

Query: 690 NHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            +  S R   +    + + E   L   +E +   + + P +   D  ++G+EAL+++   
Sbjct: 431 QNPSSKRYRHYNDVILSLVEPGILQKKIEQNHFIVYFQPKMSYQDRSLIGVEALVRYRTS 490

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               +S  +F+ + E   +I +I+ ++ + +   I  W  +     + +  N +   LL+
Sbjct: 491 DGTILSPGQFLPLLENARLISSIDFYVFDYVCSKIAQWLSEGKKI-VPVSANFSRYSLLE 549

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +    + A+  +   S S +++  +E+V       +  L+  +R  G ++++DDFG   
Sbjct: 550 PDFINQLAAICVEHGISHSWVEIEITETVEGIEEIDTSKLITEIRDAGFAVSIDDFGVHY 609

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + LS    I FD +K + SL+       K  +++ ++  + + +E   IA+ +  E   +
Sbjct: 610 ANLSLFTSIDFDVLKIDKSLIDNIVSNPKAQSVVGALADVCQKMEIRTIAEGVETEDQFQ 669

Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL-KLLKE 955
            L +MG    Q    + P+       K L++
Sbjct: 670 ILKQMGFGGAQGYLFSCPIPVQEFEGKFLQQ 700


>gi|304321100|ref|YP_003854743.1| hypothetical protein PB2503_07729 [Parvularcula bermudensis
           HTCC2503]
 gi|303300002|gb|ADM09601.1| hypothetical protein PB2503_07729 [Parvularcula bermudensis
           HTCC2503]
          Length = 567

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 115/561 (20%), Positives = 233/561 (41%), Gaps = 20/561 (3%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP--DIATILGLASGSMHGPIRNWL 453
            ++ I    E  + A   +   ++++D   D +          +L     +       +L
Sbjct: 1   MTRSISVSSETVATAFKAAQQTLFEFDPATDTLAWADIDTARALLSPIPNASIETADGYL 60

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             I         + + +    +R     E+R+   +   +W+  R   +    G+    I
Sbjct: 61  NLIDGEHLTRRESAVSAARAEKRA-YSVEYRI-GEEKLAYWVEERGTWL--PRGESDVLI 116

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +   I  QK+  E +   A  D LTG  NR SF ++L+  LD    +      ++++ +
Sbjct: 117 AMVRRIDAQKEREEALNYLATYDELTGQLNRASFKEKLSDWLD-GVREGTRNGCLLLVGV 175

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D    IN+  G  V D V+V +  RI +++K   +L RL+G +FG++L ++  +      
Sbjct: 176 DNVGSINNDFGFDVADQVIVEVASRIEDIVKGGTVLGRLAGTKFGVLLAADGKTTLYTTV 235

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              M       +      I V+  IG +   +  ++++  LK  E A   A+  G +  +
Sbjct: 236 REIMTTMRERVVETGAGGIAVSVCIGASELRTDMVSAAAALKEVEAAFDQARRAGASSFK 295

Query: 694 SFRVSSFRSDRVMIKEDLCL----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            F   +    +     ++      A+ +  LYL Y PI+  + +     E L +      
Sbjct: 296 MFSEQTETISQRRQNTEISDVILTALNDRGLYLSYQPIVSDVGQAPTHFECLARMRSA-G 354

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             + + +F+  AE L ++  I+  +LE     + +       P I + +N++ + + D  
Sbjct: 355 EELPAPKFIPAAERLGLVHLIDRRVLELALGTLRA------HPDITLAVNLSWETVRDPL 408

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             EG  A +       SR+ L  +E+ ++   E SR  +  ++K+G    +DDFG   + 
Sbjct: 409 WAEGYIAHLRSHCDVTSRLTLELTETQLVNEIEPSRDFVTAIKKLGCKFAIDDFGAGYTS 468

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
              L  +  D +K +GS ++G T   +    +R+++ +A+N  T  +A+ +    D + L
Sbjct: 469 FRNLKALDIDILKIDGSFVSGLTHSRENQLFVRTLLDLARNFGTKTVAEWVDNASDAQLL 528

Query: 928 TRMGCDYIQDSHVASPLGFNS 948
             +G D++Q   +  P     
Sbjct: 529 KALGVDHLQGFFIGRPGPLPQ 549


>gi|127513709|ref|YP_001094906.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
 gi|126639004|gb|ABO24647.1| diguanylate cyclase/phosphodiesterase [Shewanella loihica PV-4]
          Length = 498

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 204/419 (48%), Gaps = 15/419 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+ NR     +LT                ++IDI +++ +ND+ G ++GD +L +
Sbjct: 81  RDKLTGLLNRVGLKAKLT------CKMPLTHGMFVLIDIHRFRYVNDLFGFSLGDKLLQA 134

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L  R+   +   D+LAR++ + F I   +  +  ++  F    ++ +A PI++    I +
Sbjct: 135 LAERLERRIGDKDMLARMNEDEFLIYFNTPMSEAELMVF----QQGLAQPISIKGTVINL 190

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-RSDRVMIKEDLCL 713
              +G+   +      S+ML+  +LA+  AK                +  ++ I      
Sbjct: 191 QLQLGYLELSLHHADVSQMLRRLDLALVRAKSASNYIAAYQEGDDRSQHRQLTIVSCFPK 250

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E +ELYLV+ P   L        EALI+WD    G +S  EF+ + E   MI  ++ +
Sbjct: 251 ALEQNELYLVFQPKYNLATGNCTHAEALIRWDSSVLGPVSPGEFIPLLECAGMISLLSQW 310

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++++    + W++      + + IN+A  DL + +L E +   + +   S   + +  +
Sbjct: 311 VIDQVLLQQVRWQES--DIRLELAINLAIDDLSEKQLSERIITRLKQHGLSAQVLSIEIT 368

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES +M +  R+  +L RL++ G+ + +DDFGT  S L+YL ++P D VK + + +TG   
Sbjct: 369 ESQLMTDMVRTVAVLNRLKRAGVKVAIDDFGTGHSSLAYLKHLPVDEVKIDRAFLTGLES 428

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +   I+RS + +AK ++ ++  + +      K L +MG D +Q    A P+    + 
Sbjct: 429 DPRAQHIVRSAVDLAKGLDFSVTVEGVEQMPVFKLLQQMGVDKVQGDIYAKPMRAPELE 487


>gi|161616674|ref|YP_001590639.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161366038|gb|ABX69806.1| hypothetical protein SPAB_04491 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 668

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYSRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|319793869|ref|YP_004155509.1| diguanylate cyclase/phosphodiesterase [Variovorax paradoxus EPS]
 gi|315596332|gb|ADU37398.1| diguanylate cyclase/phosphodiesterase [Variovorax paradoxus EPS]
          Length = 468

 Score =  341 bits (876), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 184/413 (44%), Gaps = 8/413 (1%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            + L+ ++D  A        V  ID+D++ ++N  LG+A G+  LV   RRI   L    
Sbjct: 22  DEVLSPLIDDWARAGKRLAIVCDIDLDRFAEVNQRLGMAGGNAALVEAARRIKAQLPRES 81

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++AR+ G+ FG +           +    +  ++A P         +  S+G     S+ 
Sbjct: 82  VMARIGGDEFGAVFAGLGFPQ-CHEVLERILLALAEPWEWRGLTANLGGSLGARLMDSTG 140

Query: 668 ITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
                 L++A+ A + AK    G  H      +   +  V  ++ +   +   E +L Y 
Sbjct: 141 PAPEIALRDAQHAAFFAKRAADGKVHYFDAPQAKADAQVVRQRQRIQEGLAQDEFFLEYQ 200

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + +    +VG EALI+W HP+ G +    F+ + E+  + + +  +++    R +  W
Sbjct: 201 PKVDMRRGVVVGAEALIRWRHPERGLLQPIHFVPLLEDEMLAEQVGQWVIGTALRQLYDW 260

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERS 844
           R+      + + +N++   ++ ++  + +   +++        ++L   E+  +      
Sbjct: 261 REAGLR--MSVSVNVSPLHMMRHDFVDRLTEQLAQYPKLGAGALELEILETTAISQFATV 318

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              +   R +G+++ +DDFGT  S L+YL  +P  +VK + S +     +E   AI++ I
Sbjct: 319 ARFVEACRALGVAVAIDDFGTGYSSLTYLRQLPVSSVKIDQSFIREMLDSEPDRAIVQGI 378

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + + K +  T +A+ +      + L  MGC   Q   +A P+  + + + + E
Sbjct: 379 LLLLKALGRTAVAEGVETLAHGEALLAMGCTLAQGYGIAKPMAADLMQRWVAE 431


>gi|167844308|ref|ZP_02469816.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei B7210]
          Length = 459

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 186/452 (41%), Gaps = 22/452 (4%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
              + +   +  + + +  +      D LTG+ +R  F   +   L     +      ++
Sbjct: 7   SGRVLVLKSLATEHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALL 63

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +D+D+++ +ND  G A GD +L +L  R+       D++ARL G+ F ++L + + +  
Sbjct: 64  FVDLDRFRIVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASA 123

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHR 687
           ++                  +  +VTAS+G A            + ++ A +A   AK R
Sbjct: 124 VSAAERLRASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKAR 183

Query: 688 GGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL----- 738
           G N V+         +     V     +  A+E  +  L   PI+    +   GL     
Sbjct: 184 GRNRVQLADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPRARR 243

Query: 739 -EALIQW--DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            E L++      + G      F+  AE   ++  I+ +++  +   +   R +       
Sbjct: 244 GELLLRMGALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE--- 300

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
             IN++   + D    + +    ++T  +P+ I    +E+  + N   +   +  L+ +G
Sbjct: 301 YAINLSGISIGDERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALG 360

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
               LDDFG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    
Sbjct: 361 CRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKT 420

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           IA+ +     +++L  +G DY Q  ++  P+ 
Sbjct: 421 IAEYVDSAATLQKLAALGVDYAQGYYIGRPVP 452


>gi|255649880|ref|ZP_05396782.1| putative signaling protein [Clostridium difficile QCD-37x79]
          Length = 539

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 188/428 (43%), Gaps = 18/428 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+     +   +       N+   +M+++ID +K  ND+ G  VG+++L++LT+ +  
Sbjct: 41  PNREFMYQYIDDCISK-----NIHIGIMLLNIDNFKLFNDIYGYLVGENLLITLTQNLLH 95

Query: 602 LLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREIT--VTAS 657
            +     I+A L G  F I+L + +N       A  +  S  + I L  E+EI   VT S
Sbjct: 96  FIPESKGIVAYLKGEGFLIVLPNVSNKELNNMGATIIESSRELKIRLPNEKEIYSNVTFS 155

Query: 658 IGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MIKEDL 711
           IG   W      T+  +      A+  AK  G N    F                   ++
Sbjct: 156 IGSTIWNGEPNMTTLILFNQVYSALKKAKSEGKNRYILFDFKDNSFYNKLENDKEFLSEI 215

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              ++  ++ + Y P+  + +  IVG EAL +W HP  G ++  +F+ + E+  +I  ++
Sbjct: 216 SHVLQTKQIEVFYQPLYNIKNNTIVGCEALARWRHPIKGLLTPDKFIPLFEQFGLITELD 275

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E   ++I  W D  N   + I  N +     +      ++ +  K   S S   + 
Sbjct: 276 LHLFEENCKNIRRWID-NNDVFVPICCNFSRLHFFNPNFPSMLKGITEKYSVSTSNFSIE 334

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG 890
            +E++++ N       L  LR  G S+++DDFG+  S    L  +PFD +K +   +   
Sbjct: 335 ITENILIENTNTIIQQLAELRSYGFSVSMDDFGSGYSSFGMLQNLPFDIIKIDRIFLSHN 394

Query: 891 STE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + K   IL SII +A+ +    + + +  E  ++ +  + CD  Q  + A P+     
Sbjct: 395 LNDFKNTTILYSIINIARALGMLTVCEGVETEQHVEFIKSINCDIAQGYYYAKPMECKEF 454

Query: 950 LKLLKERF 957
            KLL +  
Sbjct: 455 EKLLSKEN 462


>gi|296128104|ref|YP_003635354.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
 gi|296019919|gb|ADG73155.1| diguanylate cyclase/phosphodiesterase [Cellulomonas flavigena DSM
           20109]
          Length = 580

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 96/418 (22%), Positives = 181/418 (43%), Gaps = 22/418 (5%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ +R+++   L   +D          ++ ++DID +K +ND  G A GDD+L + 
Sbjct: 172 DALTGLADRRAWDAALEQAIDRRGRRGQ-PLSLALVDIDHFKLVNDERGHAAGDDLLRAT 230

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
                 L     +L R  G+ F ++L     +      A  +  +               
Sbjct: 231 ADAWRTLDVPGMVLGRRGGDEFAVLLPGRTGAE-AHALADRLCAAAPA-----------P 278

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
           AS G A       T +E+L+  + A+Y AK  G                  + +DL   +
Sbjct: 279 ASCGVAEHVE-GETVTEVLRRTDTALYAAKAAGRGRTVLSERRRHG-----LVDDLVRGL 332

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  E+++   PII L     V +EAL +WDHP  G +   EF+ +AE+  +I  +   +L
Sbjct: 333 DAGEVHVELQPIIELGSHRAVAVEALARWDHPDLGRVPPLEFVAVAEDGGIIDRLGATVL 392

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                D  + ++      + + +N++ ++L+  +    + A +    +  ++  L  +ES
Sbjct: 393 RLACADAHALQEAWGRR-VSLGVNVSGRELVGQDYAARVLAALDAADWPTTQFVLEVTES 451

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
           VV  +   +   L  LR  G+ + +DDFGT  S LS L  +P D +K +   +T    + 
Sbjct: 452 VVEASDPAALRALATLRASGVRVAIDDFGTGYSSLSRLDELPADFLKLDRQFLTSLPTST 511

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +R  ++R+++ +   +   ++A+ +        L  +GC   Q  H   PL   ++  
Sbjct: 512 RRTGMVRALLDLCAELGMHVVAEGVETAEQAAMLEELGCHSAQGYHYERPLPVAALAA 569


>gi|209809099|ref|YP_002264637.1| putative signaling protein [Aliivibrio salmonicida LFI1238]
 gi|208010661|emb|CAQ81048.1| putative signaling protein [Aliivibrio salmonicida LFI1238]
          Length = 630

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 191/446 (42%), Gaps = 17/446 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +  ++ + + +  +   D  TG  N+ +    +  +L            ++ I       
Sbjct: 189 VDCRRAAEQKVEYHQNHDLGTGFLNQIALYQHMDNLLKQEK-----NFVLLHIHFANGLL 243

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           I    G    D +L     RI + +    I  RL+     I+L+   +  K+  F   + 
Sbjct: 244 IQQTHGHQALDRLLTEYRSRITK-ITDTSITGRLTATD--ILLVIHADKSKLPKFCQHLS 300

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           +       + ++ I + + +G A  +   +  +++L+ A   M   +  G     S    
Sbjct: 301 EIGQSNYYINDKSIHLQSYVG-AIHSKDGVPRTDLLQYAHDTMVECQSMGKTFTISDVSL 359

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     I+  L  AV N++L+L Y P +  + ++ +G EAL++W+HP+ G IS+  
Sbjct: 360 PIKSSLSEHQIESYLLEAVRNNDLFLNYQPKVCPITKKWLGCEALLRWNHPRLGAISNDV 419

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQ 815
            + IAE   +I  +  F L    +    W       P FI  +N+++  L D  L E ++
Sbjct: 420 LIQIAERNGLIYELGNFALRNAIQQTSEWVAH---CPAFITAVNVSAVQLKDPYLVEHIE 476

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++    SP  ++L  +ES ++ + + +   L RL  +G+S+ LDDFGT  +   YL  
Sbjct: 477 QLLNVYQLSPRNLELEVTESSLIADEDLAITTLNRLHDLGVSIALDDFGTGYASFQYLKK 536

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFDT+K + S +T    + +   I+ ++I +AK +   ++ + I      + + +   D
Sbjct: 537 YPFDTLKIDKSFITNITYSTEDQNIVCAMINIAKKLHLNVVVEGIETREQEQFILKEEAD 596

Query: 934 YIQDSHVASPLGFNSILKLLKERFPL 959
            +Q    A P+        L  +  L
Sbjct: 597 LVQGYLYAKPMTAEKFEMGLFNQLSL 622


>gi|126668100|ref|ZP_01739063.1| sensory box protein/GGDEF domain protein [Marinobacter sp. ELB17]
 gi|126627491|gb|EAZ98125.1| sensory box protein/GGDEF domain protein [Marinobacter sp. ELB17]
          Length = 636

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 218/487 (44%), Gaps = 11/487 (2%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
            PA         +     ++   +     ++ + S  ER       +   V+ +D+    
Sbjct: 143 TPATPTAEARRNLTQSAALVALAILRHRDTEDLLSLSERHQALFDNNPYGVFTFDMDGHF 202

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
            +    +  + G  +  + G   N    + +  R   +   D         + YE     
Sbjct: 203 QSCNAALERVTGYTADHLQGLHFNLF--VELGYRALTQAAFDRARNGE--VITYETMGTH 258

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           A      + +   P++     I+   GI  DIT++K+    I+  A  D LTG+PN  SF
Sbjct: 259 ASGHPSSLEVTNFPVTIKE-QIVGVYGICRDITDRKEQEAQIIYQATHDLLTGLPNEASF 317

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            ++L   L  +A  +      M + +D +K IN  LG  VGD +L+++ +R+  L++   
Sbjct: 318 KEKLHDAL--AADGERGSLVAMCLGLDGFKPINKELGHPVGDQILMTIAQRLKGLVEPEV 375

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           I+ARL G+ F +++ +     ++      +  ++A PI++  + + ++ASIG AS  +  
Sbjct: 376 IVARLDGDEFCLLIPNYTCRNEVTQLVDRVLANLAQPIDVDGQMVHISASIGIASNRTPL 435

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
               E+L+ A LA+  AK +G N  + +    +    + V ++ DL   +  ++  + Y 
Sbjct: 436 DAPHELLQFAGLALEQAKRQGRNTSQWYSSHKTERSRNSVSLRHDLHTGLMENQFEIYYQ 495

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWG-NISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           P++  +   I  +EAL++W HP  G  IS  EF+ +AE+   I  + L++L +   ++  
Sbjct: 496 PLVDAVTGRIRSVEALVRWHHPTRGMMISPGEFIPLAEQTGQIVPLGLWILRQACTEMAD 555

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           +        + + +NI+S   + +   + ++ ++ +T  SP  ++L  +ESV++      
Sbjct: 556 FNA-NRERALRVAVNISSLQFVRDGFLDDVRRVLKETGISPQLLELEVTESVLLDGTAPV 614

Query: 845 RLLLGRL 851
             L+  L
Sbjct: 615 IELMETL 621


>gi|313905653|ref|ZP_07839014.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313469477|gb|EFR64818.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 1165

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 209/561 (37%), Gaps = 42/561 (7%)

Query: 425 RDRVTT---TPDIATIL---GLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRG 477
             RV     +     +    G+    ++  +  +     H +D              + G
Sbjct: 28  NQRVYVIALSGGFVKLFELDGMDRDDVYDLMDKDMYHNTHPDDLAMIGDA-AYSFATKGG 86

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG------------------IANDI 519
                +R R     +  +    R ++  NG  L ++                     ND+
Sbjct: 87  EYDVLYRSRIG-GDYQIVHAYGRHITKENGVRLAFVWYTIYGGYRDDCRNKNSGDHFNDV 145

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            +++     +      D LTG+P+   F D L         ++ + P ++ +D +  K  
Sbjct: 146 LKEQLLRRSMGIRESHDFLTGLPSMTYFFD-LAEAGCREIRENGMSPAILFMDFNGMKGF 204

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N   G+  GD  L    + +       +  +R S + F +      +          + +
Sbjct: 205 NQKYGLQEGDRFLKDFAKTLV-CHFSHENCSRFSADHFCVF----TDLETAGKEIELIIE 259

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I  P    + E T+   +G   +   +I+ S     A++A    +    + +  F    
Sbjct: 260 EIGNP----DFEDTLPLRVGIYCYEDEEISISGACDRAKIACDTGRKSYESKIYHFNDEM 315

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +      I E+   A++   + + Y P+IR  +  +   EAL +W  P  G +    F
Sbjct: 316 MAAMENRQYIVENFERALKEGWIEVFYQPVIRTANGRVCAEEALARWRDPSRGILQPDSF 375

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + EE   I  ++L++++ +   +   +   N+  +    N++  D    ++ + ++  
Sbjct: 376 VPVLEETNRIYKLDLYVVDGLLLKMKE-QAANNLYLVPQSFNLSRLDFYACDIVDEIRRR 434

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +        R+ +  +ESVV  +       + R + +G  + +DD+G+  S    L  IP
Sbjct: 435 VDDAGIPRDRLVIEVTESVVASDVNYMTREIRRFKDLGFQVWMDDYGSGYSSPVILQDIP 494

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +   +     +EK   IL  II MA  +    IA+ +  E  +  L R+GC  +
Sbjct: 495 FDLIKIDRLFVNRIGESEKSRIILAEIIKMAMALGMDTIAEGVETEEQMNFLKRIGCTML 554

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  +   P+    IL+  + +
Sbjct: 555 QGYYYCKPIRMAEILERYRRK 575



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 123/333 (36%), Gaps = 31/333 (9%)

Query: 373  GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            G  +LI I      ++   A     +      +R + A+ G    +++ D   D      
Sbjct: 841  GNFILIGINNIDGQMKTKEALEQIREERLI-FQRMA-ALSGDFIALYNVDPETDEYF--- 895

Query: 433  DIATILGLASGSMHGPIRNWLPYI--------HINDRDNF-----RTILDSFVGYRRGRL 479
              + +            +++   I        H +D+ +F     +  +   +  +   +
Sbjct: 896  RFSRLDVADPSENPTVGKDFYERICKIMDQIAHEDDKADFFVRFRKETILDEIRGKGKFM 955

Query: 480  QYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRYIGIANDITEQKKSLEG---ILCNAF 534
               FR+     +  ++ ++   +   + +  I+  I + +++  QK  ++    +   AF
Sbjct: 956  TKHFRIYFK-GEITYVQLKATMVNEKDKDKIIMGIINVDDEVRRQKAYIQTLSAMENEAF 1014

Query: 535  QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
             D LTG+  + +++D    +             + V DI+  K+IND  G  VGD  ++ 
Sbjct: 1015 TDELTGVKRKHAYIDLEAKLNKDILKGSCPEFAIAVFDINGLKEINDTYGHLVGDQYIID 1074

Query: 595  LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             +R I  +      + R+ G+ F +I   E+           +       +        V
Sbjct: 1075 GSRLICRIF-QHSPVYRIGGDEFAVIAQGED-----YRNIDQLMGEFTRIVEENRHSGGV 1128

Query: 655  TASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
              + G + +T ++   +E+ + A+  MY  K +
Sbjct: 1129 VVAAGVSKFT-NEKNVAEVFQTADQYMYRNKEQ 1160


>gi|239628911|ref|ZP_04671942.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519057|gb|EEQ58923.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 901

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 97/437 (22%), Positives = 199/437 (45%), Gaps = 15/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A+ D +  + NR  FL     ++     D   R  +  +DI  + + N++ 
Sbjct: 472 RYRKQVEQLAYFDPVFNVGNRPKFLRDTNMLISY---DKKRRFKLYCVDICSFSQYNELF 528

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             ++GD++L  + RR+         + R++G+ F  + +S+     +  F   ++K  A 
Sbjct: 529 SASIGDEILHEVLRRLSRPF--GSYVYRINGDVFLGVSLSD---ESVGFFVTRLQKMFAT 583

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRS 702
           PI +      +   I    +     T  ++L + + A+  +K  G    V S ++     
Sbjct: 584 PITVGNLSFLLQIRIVACLYPEHGETPGDLLDHIQSALRFSKESGDAVVVYSRQLDEIIR 643

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I   +  A+    L + Y PI++L   +    EAL++      G+ S+ + + +AE
Sbjct: 644 TEADILRRMKDAIREDTLEVWYQPIMQLDGGQYTAAEALVRLPDGNGGHFSAGQVISLAE 703

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKT 821
              +++ +  ++L R    +   ++Q     +  I IN++ + LL       +  LI  T
Sbjct: 704 RNGIVEELGDYVLSRACVFM---QNQGVGLGLKRIGINLSVQQLLVGNSARHLLELIHST 760

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L  +ES+++ + +R+  +L +LR  G+ + LDDFG   S L+YL  +P D +
Sbjct: 761 GVDPRRITLEITESILIQSIDRAAEVLEQLRLSGVHIALDDFGVGYSSLNYLSNLPVDVI 820

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL      + K+ A+L+SI  MA   +  ++A+ +  + ++  +   G  +IQ  +
Sbjct: 821 KIDRSLTKQILTSPKQCALLKSIAEMAAINDLGVVAEGVETQEELNAIAVSGVQFIQGYY 880

Query: 940 VASPLGFNSILKLLKER 956
            A P+    +   L ++
Sbjct: 881 YARPMPEEKVCHFLSQQ 897



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 7/156 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +QK++LE        D  TG+ NR+ F   L   L     + +   T+    I+ Y +  
Sbjct: 273 QQKRALEKTGSM---DKDTGLYNRKGFTAALDGWLS----NGDRPVTLFYFSIEGYIQAA 325

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            ++G A   + L S+  R+ + +  P +  RL    + I +  +    +  DFA  +   
Sbjct: 326 RMIGEAEELEFLKSIPARLDDYIHNPYLAGRLDAGSYIIAVREKMEEQQREDFAKGLSLE 385

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           + + + +   +  + A   +A          E +  
Sbjct: 386 LLLQVRMDGEKNFLMARYQYACCQPGVCRGEEEISK 421


>gi|168818563|ref|ZP_02830563.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344356|gb|EDZ31120.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088036|emb|CBY97798.1| Protein yhjK [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 668

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVIARQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|88812954|ref|ZP_01128197.1| diguanylate cyclase/phosphodiesterase [Nitrococcus mobilis Nb-231]
 gi|88789732|gb|EAR20856.1| diguanylate cyclase/phosphodiesterase [Nitrococcus mobilis Nb-231]
          Length = 581

 Score =  341 bits (875), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 119/555 (21%), Positives = 217/555 (39%), Gaps = 54/555 (9%)

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G     +   ++     I  ++        D  V       Q+   +  A  +   + + 
Sbjct: 43  GGNREQLLAHLQRRYEVIEPDEAALSLAPFDLAVVEATSFWQWRQHLMEAKRREEPVFLP 102

Query: 499 IRPMSNSNGDILRYIGIANDI--------------TEQKKSLEGIL-----------CNA 533
           +  + +   D+   +    D+              TE+   L                 A
Sbjct: 103 VMLVLSQR-DVRHKLNAFWDVVDEFVVAPIKRHEFTERAAMLLRTRQLALTQRAHLAYLA 161

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSA-TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
             D  T +PN+  F+DRL   +  +A  D  L  TV+ I + +   I   LG    +   
Sbjct: 162 NHDRATDLPNKHLFMDRLINAVRDAAVLDTRLYLTVIHIPLTR---IMKSLGHHGLERAA 218

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           ++ + RI  LL     LARL+   +G+I     +   + +    ++     PI +L   I
Sbjct: 219 IACSVRIKALLAEELSLARLTTEEWGLIPRPGTSMDVVLELCRRIQVLAEEPITVLGEHI 278

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
            ++  IG   +      ++  L  A  A+  AK        S  V       +  +  L 
Sbjct: 279 HISPRIGIGVYPDDAANAANTLDCAIAALSQAKAEQ-PVFYSRTVQHQALRHIRTEARLY 337

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++ ++  L Y P + L D   VG+EALI+W  P    +   +FM +AE   +I+ I+ 
Sbjct: 338 QALDEAQFELWYQPQVHLSDRRPVGVEALIRWRLPSGVLVPPKDFMAVAETTGLIRDIDR 397

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK--- 829
           ++L+R    +  WR+     P  I +N++++D+   +  E +   + +    P  ++   
Sbjct: 398 WVLDRACEAMRRWRN-TGNAPERISVNVSAEDIKAADFTEMIVRTLDQHQLPPPTLELEL 456

Query: 830 -----LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
                   S        +++   L  LR+ G+S+ +DDFGT  S LSYL  +P  T+K +
Sbjct: 457 TETTLFEIS--------DKNLTKLNTLREYGVSVAIDDFGTGYSSLSYLHRLPITTLKID 508

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +   T      AI R+I+ +AKN    ++A+ I      + L  +     Q      
Sbjct: 509 KAFVDDVTHNLTNQAITRTIVWLAKNFNLEVVAEGIETVEQARYLKSLEVHTGQGFLYGR 568

Query: 943 PLGFNSILKLLKERF 957
           P        LL++RF
Sbjct: 569 PAP----ETLLRQRF 579


>gi|121533626|ref|ZP_01665453.1| diguanylate cyclase/phosphodiesterase [Thermosinus carboxydivorans
           Nor1]
 gi|121307617|gb|EAX48532.1| diguanylate cyclase/phosphodiesterase [Thermosinus carboxydivorans
           Nor1]
          Length = 511

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 180/400 (45%), Gaps = 6/400 (1%)

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 +++ DI    ++  + G       +  +++++G L+     L +L    F  I+
Sbjct: 111 RQAPLAMLLWDIGCLHQVARIFGPEAKKKAMKHVSKQVGSLVDEAHRLFKLRDTEFLFII 170

Query: 622 ISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +  N  ++      + ++   P+ + +  +++T + G   +        E++K    A
Sbjct: 171 TGQAANQAEVGQLFARLIENTGQPLKVGDYNLSMTINAGLVRYPDDGTDLEELIKKGGQA 230

Query: 681 MYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +  A+  G N   ++  +     +  + +  DL  A+   +L L Y P +++   ++ G+
Sbjct: 231 ILKAQSSGHNTWTTYDQTMKLDLTQEMALVADLREAILTDKLELYYQPQVQIATGQVTGV 290

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP +G I  + F+L+AE   +   +  ++LE   R    W D        I +
Sbjct: 291 EALLRWKHPVYGEIPPACFVLLAERSGLANRLTEWVLEHACRQGKKWLDAGVKFG-RIAV 349

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NI++       L + ++ +++ T   P  ++L  +E++ + +    R +L  LR+ GI++
Sbjct: 350 NISANCFAGGWLNKAVRRVLAATGLEPQFLELEITENIEIVSTAVVRDMLAELRRSGITI 409

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
             DDFG   S   Y+   P DTVK +   +   T      AI++++I +A ++  + +A+
Sbjct: 410 AFDDFGIGYSSFKYIKLFPLDTVKIDRLFVADVTHDVSSYAIVQTVIRLAADLGLSTVAE 469

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +     +  L   GCD  Q   ++ P+    ++ LL   
Sbjct: 470 GVETVEQLTLLQAAGCDKYQGYLLSPPVPARDVVALLCRH 509


>gi|238910357|ref|ZP_04654194.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 668

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|300713226|ref|YP_003739265.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299060297|emb|CAX53547.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 702

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 113/584 (19%), Positives = 221/584 (37%), Gaps = 32/584 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             ++   +          +  +R       S D +      R      P   T+ G    
Sbjct: 131 AALVMDRMEVHRLELLRHTTQQRLEAISWTSPDAIICTTPGRGITFWNPAATTMFGFTDK 190

Query: 444 SMHGPIRNWL--PYIHINDR---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
            M G     L      I+ R   +      ++    R      +      D       + 
Sbjct: 191 EMTGQYVAGLVPERCQIDYRNELERLTADEEAVSQPRT----LQIWGLRRDGHEFPAEVS 246

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                     ++  I    D+T + +S   +   A  D LT + +R +F+++L  +    
Sbjct: 247 FSGWREGGERLVGMI--IRDVTARHESEARLCELASLDMLTRLASRSAFMEQLGQM---- 300

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
            T+  +  T+++ D+D +K++ND LG A GD +L  +  +I        + ARL G+ F 
Sbjct: 301 -TEAGVPYTLLMTDLDGFKEVNDTLGHAAGDALLCHVAEQIRLACADAVVAARLGGDEFI 359

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L       +    A  +   I +P +     + V AS G AS+    +  S ++  A+
Sbjct: 360 VLLCG--GVAEATLTAERLISCIQIPFSYHGAPLIVGASTGIASFPEHGLDPSAVMSAAD 417

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL--AVENSELYLVYHPIIRLMDEEIV 736
           LA+Y AK  G      F  +   +++   + +  L  AV   +  L Y P        + 
Sbjct: 418 LALYRAKASGKGCSVLFLPAFREAEQRRRRFERELETAVHQQQFILYYQPRYDARSGRLT 477

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W HP  G +  +EF+ + ++  +   +  +++      +  W+     P + +
Sbjct: 478 GCEALVRWQHPARGLLLPTEFIGMLDKSPLSVRLGEWIISSAIAQVRQWQS--GCPHLRV 535

Query: 797 LINIASKDL-LDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            IN+  + L L  E       L+ +        + L   ES++          L  +R  
Sbjct: 536 SINLFPRQLGLGPE------QLLREFGSGDLGFVDLEVDESLLPLLTGEIPGNLAAIRDT 589

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETT 912
           G  L +D +G     ++ L +     VK + SL            +  +I  + K++  +
Sbjct: 590 GAGLIIDHYGRTLGAMNLLRHDLVSGVKIDKSLTHELATNMRVRMMFSAIAELGKSLGIS 649

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + A+ +   +    +T  GCD +Q + +  PL   +  +LL   
Sbjct: 650 VAAEGVEDMLQQTFVTNAGCDIMQGNGLCLPLTAAAFGELLSSE 693


>gi|225571509|ref|ZP_03780505.1| hypothetical protein CLOHYLEM_07607 [Clostridium hylemonae DSM
           15053]
 gi|225159586|gb|EEG72205.1| hypothetical protein CLOHYLEM_07607 [Clostridium hylemonae DSM
           15053]
          Length = 694

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 190/472 (40%), Gaps = 44/472 (9%)

Query: 503 SNSNGDILRYIG--------------------IANDITEQKKSLEGILCNAFQDNLTGIP 542
              +G++L +IG                    I NDIT++   L+     +++D LTG+ 
Sbjct: 236 FWKDGELLGFIGVDNPSCGTEQIKLLQSVPYFIENDITKRH-MLDKFRELSYRDTLTGLG 294

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR  +++ +  +       +     V+ +DI+  K  ND  G   GD ++ ++   + ++
Sbjct: 295 NRNLYIETIEGL----QQRELHSLGVLFVDINSLKYSNDNYGHQYGDRIIQNVAHGLADI 350

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                   R+ G+ F  + I      +     + +R+         + +     SIG  +
Sbjct: 351 FPENA--YRVGGDEFVCLFID-GERREFERRILRLRR-------FEQEDCMCDFSIG-VN 399

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
           +    +   E +  ++  MY  K           V    S   M+ + L   + + E  +
Sbjct: 400 YREGDVDIKEQIGYSDNMMYVEKQ----IYYGNAVEGKNSYHEMLAKKLVGEIASGEFEV 455

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              P + +    + G EAL++        +   +F+ + E   +I+ ++L++ E + R +
Sbjct: 456 YLQPKVDIDTGGLYGAEALVRRRMESGEVLMPGQFIPLYEAEGVIQQLDLYVFEEVCRLL 515

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            SWR +     I I +N +   L+  ++ E +  +  K    P  + +  +ES+     E
Sbjct: 516 ESWRKKGYRM-IPIAVNFSRISLMGIDIMESLARIREKYEIEPGLLTIEVTESISRMGAE 574

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
               L+ + +++G   +LDD+GTK S LS L  + F  +K + SL+       +   +L 
Sbjct: 575 ALGQLMDKFKELGFEFSLDDYGTKYSNLSLLARLEFKELKIDQSLIRDILTNRRSRIVLE 634

Query: 901 SIIPMAKNIETTI-IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             I M + +     +A+ +  E   + L    CD  Q    + P+     L 
Sbjct: 635 HTIEMCQELGIITAVAEGVETEEQRELLKHYHCDIGQGFLFSEPIPIGEFLD 686


>gi|145299436|ref|YP_001142277.1| GGDEF/EAL domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852208|gb|ABO90529.1| GGDEF/EAL domain protein [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 644

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 105/457 (22%), Positives = 204/457 (44%), Gaps = 13/457 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR-PTVMV 570
            +     +    + +      A+ D +TG+PN  + +  L  +   +A     R  TV V
Sbjct: 178 MLATMVMLLVLFREVRHQHFLAWNDTMTGLPNGAALIKHLKHLKQRAAHRGGGRSITVCV 237

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+  ++++ND LG  +GD +L  L  RI + L     +AR   + F I++     +   
Sbjct: 238 VDLGHFREVNDSLGYEIGDALLKQLAERIHDALTAGIFVARTGSDEFAIVISGVMPTYLR 297

Query: 631 ADFAIAMR---KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             F   +R     +A      +    V   +G + +     T  EML  A++A+  AK R
Sbjct: 298 FPFLEQLRSELAELAELAFAADPAHRVRVFMGVSQYARPVNTPEEMLLFADIALDSAKRR 357

Query: 688 GGNHVESFRVSSFRSD--RVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALI 742
             +    F  S ++       +  +L      ++  +L L Y PI+R      +G EALI
Sbjct: 358 RLHRYVVFSSSMYQHYLRNRRLSAELRALICCIDCQQLSLYYQPIVRGQGAVRLGAEALI 417

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP++G I   + + +AEE  + + + +++  R+  D+  +       P+ I +N++S
Sbjct: 418 RWRHPEYGFIPPLDIISLAEENGLGEDLGVWIFMRLQHDLAIFPSDLI-EPLEISVNLSS 476

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
               +  L   ++A  S+      ++ +  +E++ + + E S+ ++  LR+IG+ + LDD
Sbjct: 477 SMF-NMGLAANVEAKTSEGPLGLQQLIVELTETIALDDIELSKQIIHSLRQIGVRVALDD 535

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S  SYL  + FD +K + S +T           + +I  ++  +   ++A+ +  
Sbjct: 536 FGTGWSSFSYLRELYFDKLKIDRSFITAIDSDTRQALFVEAITTLSHQLGVRVVAEGVEN 595

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             ++  +  +G D IQ    + PL     L      F
Sbjct: 596 SNELNAVLNIGVDEIQGYFYSKPLPLQDFLLFCHRYF 632


>gi|255656858|ref|ZP_05402267.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296452309|ref|ZP_06894012.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296877660|ref|ZP_06901688.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296258810|gb|EFH05702.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296431282|gb|EFH17101.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 760

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 194/439 (44%), Gaps = 14/439 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K+   ++  A+ D++T   ++  F      I+  S+++         I+I K+K IND 
Sbjct: 311 QKNRAQLIKIAYVDSVTKGYSKARFDMEAKKIIQSSSSESYSLV---SINIQKFKLINDS 367

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  L  +   I   LK  ++L R+S ++F +++ +      I  +   +   I 
Sbjct: 368 FGSEAGDKTLKYIHDVISNYLKPEELLCRVSNDQFNVLIKTIPQKE-ILSYIENITNDIN 426

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 E +  +  SIG        +    +   A +A  + K   GNH     V     
Sbjct: 427 SFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTCVFYSDL 486

Query: 703 DRV------MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +R+       ++  +  A+ N+E  +   P I L D  IVG EAL++W  P  G I   E
Sbjct: 487 ERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQEPNKGLIPPDE 546

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E+   I  ++ ++ E++   I  W D     PI + +N +  +L + +  E  + 
Sbjct: 547 FIPFFEKNGFITKLDHYVFEKVCSMIRKWID-NGETPIPVSVNFSRANLNNIDFLEKYRM 605

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           + +K       +++  +E++V  N ++   ++ ++ + G   +LDDFG+  S L+ L  I
Sbjct: 606 IRNKYDIPAKLLEIELTETLVFENLQKLINIIDQIHEEGFQCSLDDFGSGYSSLNMLKEI 665

Query: 877 PFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             DT+K + +  +      IA   I+ SI+ + K +    I++ +   + +  L ++ CD
Sbjct: 666 KVDTLKLDRAFFSSPNADNIAENHIIESIVNLTKKLNMNSISEGVETILQMDYLKKINCD 725

Query: 934 YIQDSHVASPLGFNSILKL 952
            IQ    + PL      K+
Sbjct: 726 MIQGYVFSKPLPQEIFEKM 744


>gi|304313073|ref|YP_003812671.1| hypothetical protein HDN1F_34560 [gamma proteobacterium HdN1]
 gi|301798806|emb|CBL47039.1| Hypothetical protein HDN1F_34560 [gamma proteobacterium HdN1]
          Length = 1323

 Score =  341 bits (874), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 188/439 (42%), Gaps = 13/439 (2%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +K  + +   A +D LT +  R+ F   L   +  +  + N +  V+ ID+ ++K +N++
Sbjct: 878  QKIYDRMSEEASRDPLTQVFTRKEFERNLAQCVARAKRN-NTQYVVVYIDLVQFKLVNNL 936

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD +L     R+ ++     I+ R+ GN F II     + +     A  +++ + 
Sbjct: 937  YGYDAGDQLLKQAAGRLHDVKLPDSIIGRIGGNEFAIIFT-IASEVDAYRSACRIKEVLE 995

Query: 643  -MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES----FRV 697
                   +    +  S+   ++        E+L+  E A   AK +G   V+        
Sbjct: 996  GEKYKFTKASHVIQVSVSGCAFDHKTNNVLELLRAVEAAAQIAKEKGLKEVQMVTPGDAR 1055

Query: 698  SSFRSDRVMIKEDLCLAVENSELYLVYH---PIIRLMDEEIVGLEALIQWDHPKWGNISS 754
               R   ++    +  A++ +EL L      P+     E +   E L+        +   
Sbjct: 1056 FKERDTMMLWAARISKALDQNELRLRAQKIAPVASRHPEWLPHFEILLTIVDENGQHNPP 1115

Query: 755  SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            ++F+L AE    +  ++ +++ R    +    +  +    F  IN++   L D    + +
Sbjct: 1116 ADFILAAEAYGRMVDVDRWVINRTLTWMSENLESLDQFGGF-AINLSGHTLNDEGFLDFI 1174

Query: 815  QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
               + +     ++I    +E+  + N + +   +  +++IG   +LDDFG   S  +YL 
Sbjct: 1175 FEQLVRHEVPRNKIIFEITETTAVTNLDEAADFIAEMKEIGCRFSLDDFGAGQSSYAYLK 1234

Query: 875  YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             +P D +K +G+ +      +   A+++SI  M + +   I+A+ +  +     +  +G 
Sbjct: 1235 KLPVDFIKIDGAFVRKVDVDKVDYALVKSISEMGRFLGKHIVAEFVSDQSKYDTVVGLGV 1294

Query: 933  DYIQDSHVASPLGFNSILK 951
            DY+Q  H+A P+  + +L+
Sbjct: 1295 DYLQGWHIAKPVALDDLLE 1313


>gi|154244039|ref|YP_001414997.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
 gi|154158124|gb|ABS65340.1| diguanylate cyclase/phosphodiesterase [Xanthobacter autotrophicus
           Py2]
          Length = 477

 Score =  341 bits (874), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 6/387 (1%)

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           + K +ND LG   GD  L+    R+  LL+   +LARL G+ F  ++            A
Sbjct: 77  RLKDVNDTLGHDAGDAALMETAHRLDALLEPDGLLARLGGDEFVAVVKGAAPVAAGQRLA 136

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            A+   +  P+    R  T  ASIG A+      +  E++K+A+LA+Y AK +G N    
Sbjct: 137 HAILAELRRPVLHAGRHFTTRASIGLAACPDHDCSYGELMKDADLALYAAKQQGRNRAVV 196

Query: 695 FRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +  +  ++  +RV +   +  A+   E+   Y P + L+   I GLEAL++W       +
Sbjct: 197 YAPAMRQAVLERVALNRAMRAALAEDEIIPYYQPKVSLVTGRIEGLEALVRWRRSPHSVL 256

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F     +  +   I   M+ R++ D+  W +    P   I IN+A       +L  
Sbjct: 257 SPGSFEAALTDPELAVLIGERMVRRVSTDVRGWIEA-GHPCGRIAINLAPAQFAGGDLAA 315

Query: 813 GMQALISKTLYSPSRIKLSFSESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            +          P+   +  +E+V +  + +    +L  L + G+ + LDDFGT  + L 
Sbjct: 316 TLLRQFHAAGVEPTHFDVEITETVFLGRSSDHVAPILDELYRAGVRIALDDFGTGYAGLI 375

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           +L  +P DT+K + S +          AI+ ++I + +N+   ++A+ +      + L  
Sbjct: 376 HLKQLPIDTIKIDQSFVKDIERDAFDTAIVCAVIDLGRNLGMRVVAEGLETAGQARFLKD 435

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
             C+  Q      PL    + +LL++ 
Sbjct: 436 KRCELAQGFFFFRPLDGAEMTELLRKE 462


>gi|168465096|ref|ZP_02698988.1| protein YhjK [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194735819|ref|YP_002116552.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204928750|ref|ZP_03219949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194711321|gb|ACF90542.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195632457|gb|EDX50941.1| protein YhjK [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|204322183|gb|EDZ07381.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 668

 Score =  341 bits (874), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|291520460|emb|CBK75681.1| diguanylate cyclase (GGDEF) domain [Butyrivibrio fibrisolvens 16/4]
          Length = 579

 Score =  341 bits (874), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 209/558 (37%), Gaps = 27/558 (4%)

Query: 417 IVWDWDIVRDR--VTTTPDIATILGLA--SGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
             + ++   D   +    ++  + G +     +      +   +H  D       + +  
Sbjct: 21  GFFIYEAEGDEKILFADSNVIHLFGCSTFDELLEFTGSTFKGMVHPEDLYKIENQIQAQT 80

Query: 473 GYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE------QKKS 525
            +   R  Y  +R+        ++      +   NG    Y+ I  D+ +       + S
Sbjct: 81  VFGDKRHDYVRYRIITKQGDTKYIEDFGYLLHWMNGKSFFYVFIV-DVDQNEYLNSSRNS 139

Query: 526 LEGILCNA---FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                  A     D LTG+ N   F  ++  +L+ S          +  DI  +K  N+ 
Sbjct: 140 YAEAEILAADRETDKLTGLFNMSFFYHKVQLLLNTSDMWRQDN-AFIHFDIPNFKLYNER 198

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L  L R I ++      +AR S + F +      +          + +   
Sbjct: 199 HGFKKGDELLCDLGRIIKDVFYTG-TVARFSDDHFVVFTNGTKDE-----VIENVEEVYK 252

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             +   +    V    G       +        +A LA    K R   +   +       
Sbjct: 253 KMLLSDDVNKKVRVKAGIYFLDDQRAEVGLACDHARLACNSIKIRHDLNYCIYDDVLRDK 312

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            R    + + +  A+    + + Y PIIR+   EI G+EAL++W  P  G +S  +F+  
Sbjct: 313 LRRQQYVVDHIDEAIALDYIKVYYQPIIRVATGEICGMEALVRWVDPSVGMLSPLDFIET 372

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   +I  ++ F+++++ +D+    D+   P + + +NI+  D    ++ + +      
Sbjct: 373 LEHFHLIHLVDEFIVKKVCQDMRMLMDE-GRPIVPVSVNISRLDFDVCDVLKLLSDFCEI 431

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                + I++  +ES    +    +    ++R  G  + +DDFG+  S L+ +    FD 
Sbjct: 432 YEIPNNMIEVEITESAFNDDSGLIKQEAAKIRNAGYEIWVDDFGSGYSSLNTIAEYEFDV 491

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +     + K   ++  II  +K +    + + +  E   + L  +GC+  Q  
Sbjct: 492 LKLDLVFLRSYDGSPKSRTLMSYIIKGSKELGIKPLCEGVETEEHYQFLKSIGCERAQGY 551

Query: 939 HVASPLGFNSILKLLKER 956
           +   P+  + +L  + ++
Sbjct: 552 YFGKPMPLDEMLNYINDK 569


>gi|168232450|ref|ZP_02657508.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469418|ref|ZP_03075402.1| protein YhjK [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194455782|gb|EDX44621.1| protein YhjK [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333196|gb|EDZ19960.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 668

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|159042885|ref|YP_001531679.1| diguanylate cyclase/phosphodiesterase [Dinoroseobacter shibae DFL
           12]
 gi|157910645|gb|ABV92078.1| diguanylate cyclase/phosphodiesterase [Dinoroseobacter shibae DFL
           12]
          Length = 529

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 196/430 (45%), Gaps = 10/430 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+P R + L+ L                 MVID+D +   N+  G    D+VL  
Sbjct: 86  RDGLTGLPCRAALLEVLDKYFATPGASTRT-AACMVIDLDDFHSFNERWGREAADEVLRQ 144

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
              R+   ++  D++ RL  + F + L              A  ++++++ P+ L     
Sbjct: 145 TANRLRSAVRDNDLVVRLDADAFALYLAPSEGMTLDSTLSIADRIQRALSEPLVLHGLTA 204

Query: 653 TVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKE 709
            V+AS+G A  + S   T++ +L  AE AM  A+ +G   +  F        R    + E
Sbjct: 205 YVSASVGIALASKSPEPTAASLLVAAERAMVEARSQGAGALRLFSAEMQTEIRASHELAE 264

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A+EN E+   + P +     ++ G EAL +WDHP  G +S +EF+   E     + 
Sbjct: 265 DLAKALENGEIVAWFQPQVSTETGQVTGFEALARWDHPSRGIVSPAEFLPAIEASGRTER 324

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  ML +  + +++W     + P  I +N A  +L +  L + ++  + +   +  R+ 
Sbjct: 325 LSEVMLYQGLKALVAWERGGFVIP-SIGVNFAGLELRNPHLIDKVKWELDRFGLTADRLS 383

Query: 830 LSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   + +     +  L ++G  + LDDFGT  + +S +       +K + S +
Sbjct: 384 VEILETVITETDDDIVLRNIKALGELGCGIDLDDFGTGHASISAIKRFKTSRIKIDRSFV 443

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T   +   +  ++ +I+ MA+ ++   +A+ +    +   L ++GC ++Q   +A P+ F
Sbjct: 444 THIDKDGEQQRMVAAILTMAQQLQVESLAEGVETIGEHSILAQLGCQHVQGFGIARPMPF 503

Query: 947 NSILKLLKER 956
                 L E 
Sbjct: 504 EDTFAWLAEH 513


>gi|167746397|ref|ZP_02418524.1| hypothetical protein ANACAC_01106 [Anaerostipes caccae DSM 14662]
 gi|167654390|gb|EDR98519.1| hypothetical protein ANACAC_01106 [Anaerostipes caccae DSM 14662]
          Length = 725

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 189/448 (42%), Gaps = 20/448 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ ++   +   ++ D LTG+ NR  F + L          D     V+ +D++  K IN
Sbjct: 290 EQMRTYRVLKDLSYLDTLTGLYNRNRFNEDLDRF----GRQDFRSAGVIYLDLNGLKDIN 345

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L    +++  +     ++ R+ G+ F I+ ++  N        + M + 
Sbjct: 346 DTKGHQCGDQILKESAKKLQVIFSEH-MIYRIGGDEFAILCLNIKNEH-----FMRMIRE 399

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH---RGGNHVESFRV 697
           +    +     +  + ++G++ W+ S      +L  A+  MY  K    R   +   +R 
Sbjct: 400 LKYLFS---HSVDGSGAVGYS-WSESPSDFQVLLTEADKMMYTDKKEYYRSNPNSSRYRN 455

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  +   + L  A+E     +   P +    +EI+G EAL+++            F
Sbjct: 456 YFDDRLDLKSLDHLLKAIEEERFCVYLQPKVLCSTQEIIGAEALVRYIGQDGTVEPPISF 515

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E    IK ++ F+ E + R I  +    + P   I +N +   L+D    + + ++
Sbjct: 516 IPLLESAMTIKYVDFFVFEEVCRIIQDFIKS-DSPVFPISVNFSRFTLVDAGFLKTIFSI 574

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +     S ++   +ES    +      ++  ++K G S+ +DDFG K + LS +    
Sbjct: 575 CDQYQVPRSLLEFEITESAENIDETFLDDMIRDIKKAGFSVAIDDFGVKYANLSLVLNSD 634

Query: 878 FDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S++        A+  ++++  + K +  + I + +  +   + L  + C+ I
Sbjct: 635 IDTLKLDKSMIDSIESNEKAMMFIQALAYICKTLNISFIVEGVESQDQFEILKALRCEGI 694

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q      P+  +   + L+E+    KN+
Sbjct: 695 QGYLFGRPMPLSDFCRFLEEKQNKPKNS 722


>gi|298290577|ref|YP_003692516.1| diguanylate cyclase/phosphodiesterase [Starkeya novella DSM 506]
 gi|296927088|gb|ADH87897.1| diguanylate cyclase/phosphodiesterase [Starkeya novella DSM 506]
          Length = 707

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 106/586 (18%), Positives = 219/586 (37%), Gaps = 34/586 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG----------LASGSMHGP 448
           G+ +   R   A+ G    +   D           +  I                 + G 
Sbjct: 133 GLKAAETRLDDAIDGIPAGLILLDAEDRIELVNSGMRRIFAGADVALEAGQRLPEVLDGA 192

Query: 449 IRNWLPYIHIND---RDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                  +   D   R+         V    R G        R  +     +   +    
Sbjct: 193 EAKGFFALGPGDGAIRERLARSAQQPVEIALRDGGWILASHRRLPNGGTVGIWTDLTTQK 252

Query: 504 NSNGDILRYIGIANDITEQKKSLEG-ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
               +++         TE        I   A  D LTG+PNR +  +RL  +L      +
Sbjct: 253 KREAELIAMREQLRQHTEALADFARLIAQQARNDMLTGLPNRFALEERLDQLL---RDGE 309

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V VID+D +K IND +G A  DD+L  + R +   L+  D+LAR+  + F ++L 
Sbjct: 310 TGNLWVGVIDVDHFKGINDAVGHAAADDLLREVGRFLRGHLRGDDMLARIGADEFAMVLT 369

Query: 623 SENNSLKIADFAIAMRKS-IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +  ++   A  +  +  +    +     ++T S+G +     + +++ +L  A+ A 
Sbjct: 370 EL-DEGEVMGIANRLHAATHSHVFRIGGHRFSLTVSVGLSLAQPDRHSAASLLAAADTAC 428

Query: 682 YHAKHRGGNHVESF----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
             AK  G + V+ +       S    R+   E + L +E +   L    I+      I+G
Sbjct: 429 RVAKEAGRDRVQIYDLGDPKVSTTQQRLGWAERIRLGLELNRFTLHLQAIVDEK-HRILG 487

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+  +      S ++F+  A  L ++  I+ ++  +     +      +    ++ 
Sbjct: 488 YEALIRLRNEDGAYCSPAQFLPAARRLGLMGRIDSWVCRQCVGYAMQLIATGSDQ--YVS 545

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N+    L +      +  L+         +++  +E+  + +  +    L  +R++G+ 
Sbjct: 546 MNLGVHTLANIAFQSRLLDLVRTNPGVEQALRIEITETDEIYDAPQVSAFLAEMRELGMH 605

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           ++LDDFG   +    L  +P D +K + ++           A +R+ + +A ++   ++ 
Sbjct: 606 VSLDDFGNGYNSFEALKQLPVDGIKIDWTVTRDLLHDPIDEAQIRAAVSIAHSLGLELVI 665

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           + +  E  +  L  +G    Q  +   P+    I + L    PL +
Sbjct: 666 EGVEEEAQLVRLKELGATLFQGFYFHRPIDAADIFEAL----PLAR 707


>gi|149377692|ref|ZP_01895428.1| predicted signal transduction protein containing sensor and EAL
           domains [Marinobacter algicola DG893]
 gi|149358045|gb|EDM46531.1| predicted signal transduction protein containing sensor and EAL
           domains [Marinobacter algicola DG893]
          Length = 854

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 108/471 (22%), Positives = 205/471 (43%), Gaps = 23/471 (4%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            R      G +         +  ++ +   ++  A  + LTG+PNR      ++ +++  
Sbjct: 378 ARLYQEREGKVRAREAEITAMAARRSAELRLIEQALHNPLTGLPNRACLEMTISELIN-- 435

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF------------- 605
             + + R ++ VI +     I   LG    D +L    RR   ++               
Sbjct: 436 -REPDKRLSIAVIHLSNLPAITKTLGHRNTDRLLELAARRFNSIVSELPGICTVETTDQQ 494

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              LA L    FG I+ ++  S       +   + I  P++ L  ++ +    G A +  
Sbjct: 495 SFYLASLESATFGFIVEADVISETPRAI-VRALEEIRKPLDYLGMQLPLDPHTGSAIYPD 553

Query: 666 SKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
               ++ +++ A +A         G         S+ +DR+ +  +L  A+++ EL L  
Sbjct: 554 HATDTNTLIRRAFIAQGSDDARDRGLAYYQPSRDSYSADRLTLVSELQHALQHGELALYL 613

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P + L   E+VGLEALI+W   +   I + E + +AE+  +IK +  ++LE        
Sbjct: 614 QPKLSLKTREVVGLEALIRWPD-RKKPIPADELIALAEQTGLIKPLTRWVLENSLELRAR 672

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
             +     P+ I +NI+  +L + +    +Q L+S        I L  +E+ +M +P  S
Sbjct: 673 LLENGY--PLNISVNISPNNLREPDFPLYVQRLMSSHHTHRGAIILEVTETSMMQDPVNS 730

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSI 902
              L  L   GI L++DDFG+  S LSY+  +P   +K + SL+T    +     I+++ 
Sbjct: 731 LRALNSLHTTGIPLSIDDFGSGYSSLSYIKRLPASEIKIDRSLITDLASQAGDRVIVQTT 790

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I M  ++   ++A+ +     ++ L +MGCD IQ   +  PL F+ ++  L
Sbjct: 791 IEMCHSLGYAVVAEGVESSETMELLEKMGCDMIQGYILTPPLPFDDVIVWL 841



 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 112/404 (27%), Gaps = 16/404 (3%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R   +   L   L ++   + + A  P         + +           E   +  A 
Sbjct: 1   MRHIAQFFALAGALIMMAFGTQANAASPGFAEPDMDYIRVAP--------SEQMDLREAL 52

Query: 67  DIDGISR-RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
             D       E           W    ++     +   L+ + + +L    F+  + G  
Sbjct: 53  TSDRWQSLEGESPNFGYIRDTVWLRVPVSTIPSDRK--LLEIRYPQLDDITFYLMENGVV 110

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKD 183
           R    T        R     + +F    +P +    ++ I T       + LW+P  Y +
Sbjct: 111 RQRISTGDHLPFAQRQIRHRNFLFSFETDPQSDYQVLLRIRTQGAMQIPVRLWDPRTYFE 170

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFG-FLSKL 242
             +       I  G+  ++  F    ++  R  M +         L +I    G     L
Sbjct: 171 ATSIEDQMHAIYYGILIMVIFFNLFIFLALRERMYLLYVLSTLSYLMFIGSLNGSTYQLL 230

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
                         +        ++F   +L+      ++  + +  +     +   +F 
Sbjct: 231 WPESPWLHNQAMVLAVPVALIFTLLFSRAFLNLRVTSPRMDKLVWYTVLVNVAVAVTTFV 290

Query: 303 YPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
                AS   + LA    L  T       ++G  +A     AW L+ +            
Sbjct: 291 TDYSVASRLTVALAIPSCLLLTVMGPIQWIRGNPQAGYYTIAWGLLTLGSAITAANKYGF 350

Query: 362 LDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           + N  +    +  G  L  IL+   +   +              
Sbjct: 351 VPNSFVTAYGIEIGSALEAILLTIALAARLYQEREGKVRAREAE 394


>gi|78047595|ref|YP_363770.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325927866|ref|ZP_08189090.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Xanthomonas perforans 91-118]
 gi|78036025|emb|CAJ23716.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325541706|gb|EGD13224.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Xanthomonas perforans 91-118]
          Length = 573

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 112/407 (27%), Positives = 181/407 (44%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGTRGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +  +++    DFA  +R+ + +P+++L   + +T  +G +       + S +L
Sbjct: 88  DEMVVVAVRRDDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|21231406|ref|NP_637323.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768541|ref|YP_243303.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991650|ref|YP_001903660.1| Putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21113073|gb|AAM41247.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573873|gb|AAY49283.1| c-di-GMP phosphodiesterase A [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733410|emb|CAP51611.1| Putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas campestris pv. campestris]
          Length = 573

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 113/407 (27%), Positives = 180/407 (44%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  IDID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHIDIDHFASINENMSGEVGDQALTLTARRLQEFLGTRGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +       + S +L
Sbjct: 88  DEMIVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|217970260|ref|YP_002355494.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
 gi|217507587|gb|ACK54598.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Thauera sp. MZ1T]
          Length = 588

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 204/442 (46%), Gaps = 15/442 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + ++  A  D LTG+PNR S LD L   L            V+ + I+   +++ + 
Sbjct: 150 ERTQELVARARHDPLTGLPNRLSLLDELGAWLAARRD-----AAVLFLSIEGMDEVSRLH 204

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  V D++  +  RR+ E +     LA  +  ++ ++             A  +      
Sbjct: 205 GFGVADELARAAARRLRECV-PEGFLAVWNSTQWVLLCDCAPARGATGALAERLLAGFRP 263

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ +    + +   IG A   + + +  ++++ A LA+      G        + +    
Sbjct: 264 PVEVEHMRLHLGLRIGIA-AEADERSPEQLVRMAALALPAG--EGQWQAYEAELETRMQR 320

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R  I+E L  AV   E  LVY P + L   +IVG+EAL++WD   +G +S +EF+ IAE 
Sbjct: 321 RNGIREALRGAVGRDEFSLVYQPKVELCSGDIVGVEALLRWDSSAYGRVSPAEFVPIAEA 380

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTL 822
              I AI  +++      +  WR+   +  +F + IN++++ L+  +  E + A +  + 
Sbjct: 381 SGEILAIGGWVVRAALATLRRWREARRVADVFGMAINVSTQQLMQPDFAERLVAEVEASG 440

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P+ ++L  +ES +M +   +   L  L + G  + +DDFGT  S L+YL  +P   +K
Sbjct: 441 VPPAALELEVTESGLMQDMALAARHLDHLARAGFRIAIDDFGTGHSSLAYLKALPVSVLK 500

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + + +           +  ++I MA++ E   +A+ +  E  ++ L  MGCD +Q    
Sbjct: 501 IDRAFIRELHANPADQRLTGTVIDMARHFEFITVAEGVEQEAQLERLIDMGCDLVQGFMF 560

Query: 941 ASPLGFNSILKLLK---ERFPL 959
           A PL  +++ +L+K      P+
Sbjct: 561 APPLKEDALFRLMKTGFAHMPV 582


>gi|146279345|ref|YP_001169503.1| hypothetical protein Rsph17025_3314 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557586|gb|ABP72198.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 659

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 203/447 (45%), Gaps = 8/447 (1%)

Query: 513 IGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +   +D +   +++ +     A  D  TG+ NR++F + L   +   A        ++++
Sbjct: 210 VAALSDAVQSLQQARDENHRLANIDFATGLLNRKAFHEALQASVAHEALS-REPFGLLLL 268

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND+ G  VGD +L  L +R+   L   DI+ R+ G+ F +IL    ++   A
Sbjct: 269 DLDRFKTVNDLYGHGVGDKLLAELAQRLRGALARRDIIGRVGGDEFAVILRDVADAETTA 328

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             +  + K +  P+ L    I   ASIG A         ++++  A+LA+  AK  G   
Sbjct: 329 AVSGRLLKELNRPVRLGGPIIRSGASIGAALCPGDGRDPADLMLKADLALNRAKEEGRGR 388

Query: 692 VESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F +   R    +  I+  L   ++     ++Y P   L D  IVG EAL++W     
Sbjct: 389 AMQFDIHLQRRAAEVDGIEAGLRAGLDARTFRVLYQPQFSLCDGGIVGAEALVRWPEDGP 448

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
              S   F+ +A E  ++ A++  + E +A DI  WR Q    P  I +N+   D+   E
Sbjct: 449 DAPSPERFLGVASERGLLPALSRLIAETVAEDIGRWRRQGVRAP-KIALNLHPDDVKSPE 507

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCS 868
                  +      +   + L  +E  ++G   + +  +L RL   G  L+ DDFGT  +
Sbjct: 508 TLLETIDMFETRGITGQHLTLEITEECLVGRGTDGAAEVLERLVGRGFGLSFDDFGTGHA 567

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            LS+L  +P   +K +   + G  E     AI+ +I  +A+ +    IA+ +  EI  + 
Sbjct: 568 SLSHLKKVPVTEIKIDRQFVAGLAERRDDRAIVAAIAEIARGMGLRSIAEGVETEIQRRI 627

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           LT +G +  Q    ++P+    +  +L
Sbjct: 628 LTELGIEAGQGFLWSAPVCSGRLAGML 654


>gi|325921015|ref|ZP_08182897.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
 gi|325548497|gb|EGD19469.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Xanthomonas gardneri ATCC
           19865]
          Length = 573

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 113/407 (27%), Positives = 180/407 (44%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        V  IDID +  IN+ +   VGD  L  + RR+ + L     L R   
Sbjct: 28  LVDAAASGGPPLMVFHIDIDHFASINENMSAEVGDQALTLVARRLQDFLGARGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +       + S +L
Sbjct: 88  DEMVVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSSSLSILL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  S      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSTTSAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       +  ++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMGMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|194444940|ref|YP_002042862.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403603|gb|ACF63825.1| protein YhjK [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 668

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|168241777|ref|ZP_02666709.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194449672|ref|YP_002047643.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194407976|gb|ACF68195.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205338841|gb|EDZ25605.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 668

 Score =  340 bits (873), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|283795633|ref|ZP_06344786.1| signaling repeat/GGDEF domain/EAL domain protein [Clostridium sp.
           M62/1]
 gi|291077304|gb|EFE14668.1| signaling repeat/GGDEF domain/EAL domain protein [Clostridium sp.
           M62/1]
          Length = 750

 Score =  340 bits (873), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 186/440 (42%), Gaps = 16/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K+   ++  A+ D+LTG+ N + F    + +L+          +V  ++I  ++ IN+
Sbjct: 320 LRKNNRELIRTAYYDSLTGLFNMKRFEQEASELLEQDGCR-----SVAALNIRHFRYINE 374

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G    D VL  L   I E ++  +   R +G++F ++L +     +I      + KS 
Sbjct: 375 IFGKKQADQVLCELALIIRENIREDERFCRYNGDQFCMLLHTV-EEEEIRRRIGDIMKSC 433

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   R   +    G A   +      E++  AE A+  A+      +  +     +
Sbjct: 434 ERISRRFNRNYPIQIYAGAAV--NQVTRPDELIDRAEFALKQARQGAERDIVFYDEKLHK 491

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           ++ +  +I+     A+E  E  L   P   L   EI   EAL++W       I   +F+ 
Sbjct: 492 AEELVRLIESSKNEALEKEEFRLFLQPKRDLASGEIASAEALVRWIREDGSVIFPDQFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E       ++L+M+ ++ R +  W D+    PI + +N +      ++  E +  +  
Sbjct: 552 LFELNGFCAQLDLYMVAQVCRKLRQWEDEGRR-PISVSVNQSKLLFYQSDYVERLCQITE 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 SRI L   E +   +       +  L+ +G  ++LDDFG+  S L+ L  I  D
Sbjct: 611 HYNIPRSRITLEILEGLAAESIGELNKTIMLLKNLGFKISLDDFGSGYSSLNLLTRIGID 670

Query: 880 TVKFNGSLMTG----STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            VK +   +       +E +  +++ I+ +A+++  T + + +    +   +  +G DY 
Sbjct: 671 EVKLDRGFLEQEVFRESESQAVLMKHIVNLARDLSITTVVEGVETAENEAFIRSIGVDYG 730

Query: 936 QDSHVASPLGFNSI-LKLLK 954
           Q  + + P+  +    K L+
Sbjct: 731 QGYYYSRPIPSDEFAEKYLQ 750


>gi|317472614|ref|ZP_07931931.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899900|gb|EFV21897.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 587

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 93/440 (21%), Positives = 180/440 (40%), Gaps = 15/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +    +  A+QD LT   N + F      +L    ++         +D   +K  N
Sbjct: 151 ERRNTNLESI--AYQDTLTKASNLEKFRLDSKHLLA---SNPLCDYAFFHLDFQNFKYCN 205

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA---DFAIAM 637
           D+ G   GD +L      + E +   +  AR+SG++F ++   E     IA        +
Sbjct: 206 DIFGYDFGDLLLKQYAVFLSEDMTEGETFARISGDKFVVLRKYEYREELIARQKAVDSRI 265

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R       +     +T+   I       S I    +L  A  A    K +   H   +  
Sbjct: 266 RAFAMD--SKEHYSLTIYGGICCVKDVPSAIEIDSILDRANFAQKTVKGQEERHYAFYTD 323

Query: 698 SSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S        I  +     A++N E  + Y P + L  +     EAL++W       IS +
Sbjct: 324 SIREQMVAEINIQSRFSDALKNKEFIVYYQPKVNLSADSFDSAEALVRWQDKSGRVISPA 383

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E+  +I  ++ ++   +   ++  R ++ +P I + +N++     + +      
Sbjct: 384 SFIPVLEKNFLISTLDQYVFREVC-ILMQNRLKSGLPVIPVSVNVSKIQFYNPDFVRIYS 442

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           ++  +       +++ F+ES    N E    ++ +L + G    +DDFG   S LS L  
Sbjct: 443 SIKEEYQIPDGLLEIEFTESACFENTEYFLEIIAKLHEHGFLCAMDDFGKGYSSLSMLKD 502

Query: 876 IPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           IP D +K +      +  ++K + ++R II M K ++   +A+ I  +  +  L  +GCD
Sbjct: 503 IPIDVLKLDSLFFVSSPDSKKDLTVIRGIISMVKELQIRTVAEGIEHKEQVDFLKNIGCD 562

Query: 934 YIQDSHVASPLGFNSILKLL 953
            IQ  +   P+  +    LL
Sbjct: 563 TIQGYYFYKPMPEDDFTALL 582


>gi|200386685|ref|ZP_03213297.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603783|gb|EDZ02328.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 668

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|167756106|ref|ZP_02428233.1| hypothetical protein CLORAM_01626 [Clostridium ramosum DSM 1402]
 gi|167704098|gb|EDS18677.1| hypothetical protein CLORAM_01626 [Clostridium ramosum DSM 1402]
          Length = 746

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 171/434 (39%), Gaps = 13/434 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+   I   A++D +TG  N   F++    I  LS         ++  D+  +K  N++ 
Sbjct: 313 KNKLQITKLAYEDEITGHYNYYRFIEYCQNINHLSK------YVLVNCDVKGFKWFNEIY 366

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  + + +L  +   I    +  +   R S + F I+L S+ +  +I +    +   I  
Sbjct: 367 GEEIANRLLKQIIICIDTQCQNEEFCCRQSADHFVILLDSD-DFEQIKNRLFVLANYIRG 425

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFR 701
                          G        +  +   K  +      K    + V  ++       
Sbjct: 426 EFAKEYNTSPYYFHFGVYKILEDDVDINLAFKKTQYTSNDLKRLSKDDVSFYQEEVFQKE 485

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + I+++   +++ +       P + L   ++   E L +W HP++  IS  +F+ + 
Sbjct: 486 LYALQIEKEFQDSLKANHFKAYIQPKVNLQTGKVCSGEILTRWHHPEYNIISPGDFIPVY 545

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  M++A++  + ++    I  W        I I +N++   + +    + +  L+   
Sbjct: 546 EKNGMLEALDFHIFKKALEQIDYWNKYYG-IKISISVNVSRTYIFNEGYVDKLIHLVKAC 604

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             +P ++++  +E+  + + E    +L +L+     + LDDFG+  S L+ L  +P D V
Sbjct: 605 NVNPEQVEIEITETTALNHKEELIKILNQLKSYHFKVALDDFGSGYSSLNILKDLPIDVV 664

Query: 882 KFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           K +      +     +   I+  II +   +   ++A+ +      + L    CDYIQ  
Sbjct: 665 KIDQEFFRTNDYTHTRSHIIIEEIIQLCHKLNLEVVAEGVETIEQKEFLEAHDCDYIQGY 724

Query: 939 HVASPLGFNSILKL 952
           +   P+       L
Sbjct: 725 YYYRPMLLKEFEAL 738


>gi|21242736|ref|NP_642318.1| c-di-GMP phosphodiesterase A [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108213|gb|AAM36854.1| c-di-GMP phosphodiesterase A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 573

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 112/407 (27%), Positives = 181/407 (44%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGARGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +  +++    DFA  +R+ + +P+++L   + +T  +G +       + S +L
Sbjct: 88  DEMVVVAVRRDDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|149187081|ref|ZP_01865387.1| hypothetical protein ED21_23488 [Erythrobacter sp. SD-21]
 gi|148829292|gb|EDL47737.1| hypothetical protein ED21_23488 [Erythrobacter sp. SD-21]
          Length = 645

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 15/440 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           + +       A  D LTGI NR++    LT  L    + +     +  ID+D +K INDV
Sbjct: 212 RDAERSAQKQASTDPLTGIANRRA----LTRALGDHTSKEAGDIAIASIDLDGFKPINDV 267

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  L  +  R+ E      ++AR+ G+ F I+ +              +  +I+
Sbjct: 268 FGHDTGDIALACIATRLVEKFGSESLVARMGGDEFAILWMGPGARTNALSALPELTAAIS 327

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P+    R + +   +G A    S    S +L  A+ A+Y AK +G      F     RS
Sbjct: 328 EPLEAGGRTLRIGGCVGVAMGDGSGQEPSALLSQADAALYEAKAKGSGKSAVFSDELSRS 387

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +  +  +  +   SE+ +VY PI      ++V  EAL +W  P  G +S SEF+ I
Sbjct: 388 HERRLVIETAVRDSTLLSEMEVVYQPIRAAETGDLVACEALARWTSPLLGEVSPSEFIPI 447

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE++ MI AI    LE        W  Q     I +  N+++  L   +  + + +++++
Sbjct: 448 AEQMNMISAITERTLELAVCCACDWPAQ-----ITLSFNVSAVYLCWEDASQTILSIMAR 502

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +    +R++L  +E+ V+   +  R  L  LR  G  + LDDFG   + +SYL  + FD 
Sbjct: 503 SGLPAARMQLEVTETAVLTEFDVPRQNLAALRSAGARIALDDFGAGNASISYLREMNFDA 562

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VKF+GSL+       +R  +L  ++ + K++     A+ +    D+  +  +GCD +Q  
Sbjct: 563 VKFDGSLIVDIATDARRQRLLGGLVKLCKSLGAASTAEHVASVKDLTMVRSLGCDNVQGY 622

Query: 939 HVASP--LGFNSILKLLKER 956
            V  P  +  + + KLL ER
Sbjct: 623 LVGRPCVMNGSVLRKLLTER 642


>gi|291287914|ref|YP_003504730.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885074|gb|ADD68774.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 913

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 121/599 (20%), Positives = 247/599 (41%), Gaps = 38/599 (6%)

Query: 352 IGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV 411
           I   +   +   N II   +  G+V+I ++I       +    +  Q   +D  +    +
Sbjct: 333 ISQSILADELTKNGIIIFVMFTGVVIISLII----FNKIKVIEHEQQDYVNDLLQYKTVI 388

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
             S  IV   ++  + +     +  I G ++  + G   N     H ++       L   
Sbjct: 389 DTSA-IVSITNLKGEMMHVNDQMCNITGFSADELIGMKHN--KIGHPDNPQETYRELWGT 445

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +  +    +   +    D  + +    I P  N  G I  YI I++D+TE  ++   +  
Sbjct: 446 IT-KGDVWRGIIKNLTKDGGYFYQKTTITPFKNKEGIITNYIAISHDVTELFENKSQLQK 504

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
               D LT + NR S L  +          ++    + +IDID + KIN+  G+  GD +
Sbjct: 505 YLHIDPLTELENRASLLLEIK---------NSRSGDLAIIDIDGFHKINETFGMKFGDTL 555

Query: 592 LVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           L S   R+ E +        RL  + F +     + +L I +   A++      +N+  +
Sbjct: 556 LKSFANRLSENVNLNRYNTYRLHSDVFAVFSNQSDKNLFITNVENAVKNITKDSVNIAGK 615

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---- 706
           +I +T+  G+A  + +      +L +A+ A+  AK    +H     +    ++       
Sbjct: 616 DIIITSITGYAHGSDN------ILAHADAALQFAKANNISHYVYNPLEVDNTNIYQQNTI 669

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I + +  A++   +   + PI   +++     E L++  +     I  ++F+ I+++   
Sbjct: 670 IVKMISNAIDEDRVVPFFQPIAHTLEQSNSKYECLMRIINQDGSVIPPADFLDISKQTRF 729

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              +   +  +         D  +   I   INI+++DLL++E  + +    ++     +
Sbjct: 730 YPYLTKIIAGKSI-------DAFSDTDIEFSINISAEDLLNHETMDFIYEYANEKGV-FN 781

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ L   ES  + +   +   L + +  G  + +DDFGT  S   YL  I  D +K +GS
Sbjct: 782 RMILEIVESESLSSYSAAITALYKFKLAGAKIAIDDFGTGYSNFDYLLKIKADYIKIDGS 841

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           ++    +   A  I++SII  A  ++   IA+ I  +   +   +MG DY+Q  ++  P
Sbjct: 842 IIKLINKDERAVDIVQSIISYASKLKMETIAEFISDQKLAETAKKMGVDYLQGYYIGKP 900


>gi|284049411|ref|YP_003399750.1| diguanylate cyclase/phosphodiesterase [Acidaminococcus fermentans
           DSM 20731]
 gi|283953632|gb|ADB48435.1| diguanylate cyclase/phosphodiesterase [Acidaminococcus fermentans
           DSM 20731]
          Length = 1602

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 218/554 (39%), Gaps = 28/554 (5%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHG-PIRNWLPYIHIND---RDNFRTIL 468
           SG  +   D     +  +  + ++                +   +   D    +      
Sbjct: 19  SGICLLSTDGREQILFASQGLLSLYACRTQEEFQALTGSRFRDMVDPEDYRPLEIVSHPS 78

Query: 469 DSFVGYRRGRLQ--YEFRVRAADNQFHWMIIRIRPMSNSNGDI-LRYIGIANDITEQKKS 525
           +  +   +G +     FR+R  +  +     R+  +        L  + I + I+  +K 
Sbjct: 79  NDPLARTQGPIHPFLTFRIRTREGHYR----RVEGILGKEDVPQLGTVWILSLISTSQKM 134

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR-PTVMVIDIDKYKKINDVLG 584
           LE        D +TG+    +F      +      +  L+    + +++  +K  N   G
Sbjct: 135 LELKR-----DPITGLMGIHTFFQAAFCLGSRKKQEGQLKTFCPVYLNLTNFKLYNATWG 189

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           I  GD++L ++   +        +L RL+G+ F ++  +++   K+ D    + + I  P
Sbjct: 190 IQAGDNLLRTIGAVLQSHF-PTQLLTRLTGDGFVLMAAAQDLEEKLLDAVRQVNQLIGNP 248

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                  I + A I             +    A+ A    K      V  +         
Sbjct: 249 ------NIQLKAGIYPPQENDFPQDLRQSFDMAKSACDSIKKDALQAVAFYTPELGARLE 302

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +   + E    A++   + + Y P+IR +  ++ G+EAL +W  P+ G I    F+ I E
Sbjct: 303 IRSFVIEHFAQALQAGHIQVYYQPVIRSLTGKLCGMEALARWIDPERGMIPPGVFVPILE 362

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  +I  ++ F+L + AR +   R   + P I I +N +  D L +   + ++  + K  
Sbjct: 363 EARLIHQLDQFVLNQSARLLRDLRSS-HQPLIPISVNFSRIDFLVSNPFQLVEKAVRKYG 421

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                I++  +ES ++         L +    G  L +DDFG+  S L+ L    FD +K
Sbjct: 422 LQRGYIRIEVTESALIHQSGPILQTLQKFHTSGYKLWMDDFGSAYSSLNLLHNYHFDLIK 481

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + + +     +   I+ SII MAK++    +A+ +     ++ L  +GC+ IQ  + + 
Sbjct: 482 IDQAFLRNLNARGKKIITSIILMAKSLGIHTLAEGVETREQLEFLREVGCEKIQGFYFSR 541

Query: 943 PLGFNSILKLLKER 956
           P  + +++  LK R
Sbjct: 542 PQPYEALMTHLKSR 555



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 16/163 (9%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            + S   +  N+  D LTG  NR +F   +      +A  + +    +  DI+  K++ND 
Sbjct: 1420 RNSRRILEHNSRTDPLTGAGNRYAFHAAI------AALPEGVDLAFVFGDINGLKRVNDT 1473

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD ++ +    +G+ LK    + R+ G+ F ++L    +         A++    
Sbjct: 1474 RGHEAGDQLICTAAEVMGQ-LKGSGKVFRMGGDEF-LLLKEIASPEDAEALTKALKDRYK 1531

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                     + V+ ++G  +  +      +++   +  MY  K
Sbjct: 1532 A--------LGVSMALGTVTCRTPLANVDQIITQVDRKMYQDK 1566



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 10/214 (4%)

Query: 431  TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
            +       GL    + G     L + H       +   D  +  R         +     
Sbjct: 877  SRSFLDFYGLEEKDILGRTDEELGW-HPAPDPYRKDEEDVLLQGRTITRHLGTCIVR--G 933

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
              H ++    P+   N  I+  +G  +D+ +       +   + +D  TG  + +  L+ 
Sbjct: 934  VPHTILSSEFPLY-RNNQIVGILGYFDDLEDTPAQQALLRELSLRDPETGFLSYRGMLET 992

Query: 551  -LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
             L      +           ++DI ++ +     G+ +G  +L  +T ++  L      L
Sbjct: 993  GLQYA--DAWRCRKEDYAACLLDIPEFDEFCQAYGMELGRKLLDKITEKLRNLGLKAISL 1050

Query: 610  ARLSGNRFGIILISENNSL---KIADFAIAMRKS 640
            +R+    F     +        +I   A  +   
Sbjct: 1051 SRIGSCCFLAFTKALILKELDGQIQLLARRIHAI 1084


>gi|317470803|ref|ZP_07930186.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901741|gb|EFV23672.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 725

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 190/448 (42%), Gaps = 20/448 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ ++   +   ++ D LTG+ NR  F + L          D     V+ +D++  K IN
Sbjct: 290 EQMRTYRVLKDLSYLDTLTGLYNRNRFNEDLDRF----GRQDFRSAGVIYLDLNGLKDIN 345

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L    +++  +     ++ R+ G+ F I+ ++  N        + M + 
Sbjct: 346 DTKGHQCGDQILKESAKKLQVIFSEH-MIYRIGGDEFAILCLNIKNEH-----FMRMIRE 399

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH---RGGNHVESFRV 697
           +    +     +  + ++G++ W+ S      +L  A+  MY  K    R   +   +R 
Sbjct: 400 LKYLFS---HSVDGSGAVGYS-WSESPSDFQVLLTEADKMMYTDKKEYYRSNPNSSRYRN 455

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  +   + L  A+E     +   P +    +EI+G EAL+++            F
Sbjct: 456 YFDDRLDLKSLDHLLKAIEEERFCVYLQPKVLCSTQEIIGAEALVRYIGQDETVEPPISF 515

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E    IK ++ F+ E + R I  +    + P   I +N +   L+D +  + + ++
Sbjct: 516 IPLLESAMTIKYVDFFVFEEVCRIIQDFIKS-DSPVFPISVNFSRFTLVDADFLKTIFSI 574

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +     S ++   +ES    +      ++  ++K G S+ +DDFG K + LS +    
Sbjct: 575 CDQYQVPRSLLEFEITESAENIDETFLDDMIRDIKKAGFSVAIDDFGVKYANLSLVLNSD 634

Query: 878 FDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S++        A+  ++++  + K +  + I + +  +   + L  + C+ I
Sbjct: 635 IDTLKLDKSMIDSIESNEKAMMFIQALAYICKTLNISFIVEGVESQDQFEILKALRCEGI 694

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q      P+  +   + L+E+    KN+
Sbjct: 695 QGYLFGRPMPLSDFCRFLEEKQNKPKNS 722


>gi|294625265|ref|ZP_06703904.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294664582|ref|ZP_06729923.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292600439|gb|EFF44537.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605639|gb|EFF48949.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 573

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 112/407 (27%), Positives = 180/407 (44%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGTRGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +       + S +L
Sbjct: 88  DEMVVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|167744477|ref|ZP_02417251.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 14]
          Length = 546

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 183/440 (41%), Gaps = 22/440 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + +  +      D LTG+ +R  F   +   L     +      ++ +D+D+++ +ND
Sbjct: 106 EHELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVREP---VALLFVDLDRFRIVND 162

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A GD +L +L  R+       D++ARL G+ F ++L + + +  ++          
Sbjct: 163 TCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLLDARDEASAVSAAERLRASVD 222

Query: 642 AMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVE----SF 695
                   +  +VTAS+G A            + ++ A +A   AK RG N V+      
Sbjct: 223 GFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGIACDVAKARGRNRVQLADPHD 282

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL------EALIQW--DHP 747
              +     V     +  A+E  +  L   PI+    +   GL      E L++      
Sbjct: 283 HELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGATGLPSARRGELLLRMGALGE 342

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           + G      F+  AE   ++  I+ +++  +   +   R +         IN++   + D
Sbjct: 343 REGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRSRRFSE---YAINLSGISIGD 399

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               + +    ++T  +P+ I    +E+  + N   +   +  L+ +G    LDDFG+  
Sbjct: 400 ERFLDYVLEQFARTRVAPALICFEITETAAIANLAGALRFMHELKALGCRFALDDFGSGM 459

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + LSYL  +P + +K +GS +TG      +  I+ SI  +   +    IA+ +     ++
Sbjct: 460 ASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDIGHAMNCKTIAEYVDSAATLQ 519

Query: 926 ELTRMGCDYIQDSHVASPLG 945
           +L  +G DY Q  ++  P+ 
Sbjct: 520 KLAALGVDYAQGYYIGRPVP 539


>gi|58582186|ref|YP_201202.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624079|ref|YP_451451.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426780|gb|AAW75817.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368019|dbj|BAE69177.1| c-di-GMP phosphodiesterase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 573

 Score =  340 bits (872), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 113/407 (27%), Positives = 179/407 (43%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGTRGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +         S +L
Sbjct: 88  DEMIVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTAVSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTHNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I IN+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAINVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|157737516|ref|YP_001490199.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157699370|gb|ABV67530.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 644

 Score =  340 bits (872), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 91/529 (17%), Positives = 211/529 (39%), Gaps = 40/529 (7%)

Query: 424 VRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
             + + +      +L + +   ++   ++      I    +  T LD      +  ++  
Sbjct: 140 KNNLIFSNNHFYKLLDICSIEELNKKYKSINNLFEIE--KDCITNLDEITENSKVCIKDV 197

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++ +            I+ +  S  DI   I I  DI+   +    +    + DNLT +P
Sbjct: 198 YQNKK--------FFSIQKIFLSTKDIN--IIILTDISHVIEHRIELQKLLYIDNLTKLP 247

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR   ++ L   +            + + +I+ +K+IND  G  VGD +L  +++ I ++
Sbjct: 248 NRTKLIEDLQNNILHIK-------AIALFNINSFKEINDFFGHKVGDIILNDVSKLISQI 300

Query: 603 LKFPDIL--ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           ++  + L   +  G+ + I    E+    I      +       +     EI +    G 
Sbjct: 301 IENDNKLKLYKFPGDIYCISTTDESKENFIELVKKILESIDKNVLIYEHNEIYIRMCAGI 360

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRSDRVMIKEDLCLAVEN 717
           +    +       L  A++A+  AK    +++  F          + ++  + L  A  N
Sbjct: 361 SFSDKNNK-----LITADIALQGAKKDHKDYLVFFEKLDKLHEYENNMLWTKKLKTAFLN 415

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            ++ + + PII     ++   E L++    +   IS   F+ +A++      +   ++++
Sbjct: 416 DKITVYFQPIIDNKTLKVDKYECLVRLIDEEGKVISPFFFLEVAKKSGQYSKLTRTVIKK 475

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                    +     P    +NI+ KD+++ +  E ++ +++K     +R+     E   
Sbjct: 476 SF-------ETFENLPFEFSLNISYKDIIEPDFLEFIKTMLNKHKV-TNRVVFEILEDES 527

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           + N +     +  ++ +G  + +DDFGT  S   +L  +  + +K + SL+      E  
Sbjct: 528 IKNYDLLINFIEEIKTLGCKVAIDDFGTGYSNFEHLLKMNVNYLKIDASLIKNITKDENS 587

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             I ++I+  AK++    IA+ +  +        +G DY Q  + ++P+
Sbjct: 588 RKITKTIVEFAKSLNLKTIAEFVENKEIFDMAKDLGVDYSQGYYFSAPI 636


>gi|295091319|emb|CBK77426.1| diguanylate cyclase (GGDEF) domain [Clostridium cf. saccharolyticum
           K10]
          Length = 750

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 186/440 (42%), Gaps = 16/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K+   ++  A+ D+LTG+ N + F    + +L+          +V  ++I  ++ IN+
Sbjct: 320 LRKNNRELIRTAYYDSLTGLFNMKRFEQEASELLEQDGCR-----SVAALNIRHFRYINE 374

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G    D VL  L   I E ++  +   R +G++F ++L +     +I      + KS 
Sbjct: 375 IFGKKQADQVLCELALIIRENIREDERFCRYNGDQFCMLLHTV-EEEEIRRRIGDIMKSC 433

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   R   +    G A   +      E++  AE A+  A+      +  +     +
Sbjct: 434 ERISRRFNRNYPIQIYAGAAV--NQVTRPDELIDRAEFALKQARQGVERDIVFYDEKLHK 491

Query: 702 SDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           ++ +  +I+     A+E  E  L   P   L   EI   EAL++W       I   +F+ 
Sbjct: 492 AEELVRLIESSKNEALEKEEFRLFLQPKRDLASGEIASAEALVRWIREDGSVIFPDQFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E       ++L+M+ ++ R +  W D+    PI + +N +      ++  E +  +  
Sbjct: 552 LFELNGFCAQLDLYMVAQVCRKLRQWEDEGRR-PISVSVNQSKLLFYQSDYVERLCQITE 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 SRI L   E +   +       +  L+ +G  ++LDDFG+  S L+ L  I  D
Sbjct: 611 HYNIPRSRITLEILEGLAAESIGELNKTIMLLKNLGFKISLDDFGSGYSSLNLLTRIGID 670

Query: 880 TVKFNGSLMTG----STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            VK +   +       +E +  +++ I+ +A+++  T + + +    +   +  +G DY 
Sbjct: 671 EVKLDRGFLEQEVFRESESQAVLMKHIVNLARDLSITTVVEGVETAENEAFIRSIGVDYG 730

Query: 936 QDSHVASPLGFNSI-LKLLK 954
           Q  + + P+  +    K L+
Sbjct: 731 QGYYYSRPIPSDEFAEKYLQ 750


>gi|158337002|ref|YP_001518177.1| EAL domain-containing protein [Acaryochloris marina MBIC11017]
 gi|158307243|gb|ABW28860.1| EAL domain protein [Acaryochloris marina MBIC11017]
          Length = 608

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 91/441 (20%), Positives = 185/441 (41%), Gaps = 16/441 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D+LT + NR+ F +   T  +    ++    ++++ D+D +K  ND  G
Sbjct: 160 ANLELERLAAVDSLTRVYNRRRFDEVFLTEWNRLLREEK-PLSLIMCDVDHFKAYNDTYG 218

Query: 585 IAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMR---KS 640
              GD  L  + + I ++  +  D +AR  G  F ++L +  +       A A+R    +
Sbjct: 219 HQAGDLCLEKIAQTIAKVAKRPADCVARYGGEEFVVVLPN-TDISGATHVAEAIRGAVHN 277

Query: 641 IAMPINLLEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           + +P +       +T S+G A       I  S +++ A+ AMY AK  G + ++      
Sbjct: 278 LNLPHSTSPISNRITLSLGVACQVPDEAIAPSLLIEAADRAMYTAKEGGRDRMQVHYADC 337

Query: 700 ----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISS 754
                    +     L  A+E+++  L   PI  L         E L++         S 
Sbjct: 338 AVNLQSRQTLQWVSRLRDALEHNQFELYAQPIQALQANTSEPCFEILLRLCDQPGIVCSP 397

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F  +AE+   +  I+ ++++ +  D+           IF  +N++     + E+   +
Sbjct: 398 GMFFPVAEQYDFMPRIDRWVIKHLFADLGEINSLMLQEAIF-FVNLSGATFKNMEIASFI 456

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +++    P +     SE+V + N E +  L   L+ +G  + LDDFG+  S  ++L 
Sbjct: 457 AEQLARHNLRPEQFCFEVSETVALKNIEAAAQLTKALKDMGCKVALDDFGSGLSSFTHLK 516

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            IP D VK +GS + G  +  ++  ++ +I  ++K +    IA+ +     +  L     
Sbjct: 517 KIPADFVKIDGSFIRGVVDDDMSKGVVEAIHHVSKIMGLQTIAEYVESRAILDLLNDFHI 576

Query: 933 DYIQDSHVASPLGF-NSILKL 952
           D+ Q  +        +++   
Sbjct: 577 DFAQGHYFGPARPLVDTLATW 597


>gi|310825752|ref|YP_003958109.1| hypothetical protein ELI_0121 [Eubacterium limosum KIST612]
 gi|308737486|gb|ADO35146.1| hypothetical protein ELI_0121 [Eubacterium limosum KIST612]
          Length = 908

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 193/436 (44%), Gaps = 13/436 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A+ D +  + NR  +      ++     D     ++  +DI  + + N + 
Sbjct: 477 QYRKQVEQLAYFDPVFNVGNRSKYQRDANMLISY---DKKRPFSLFCVDICAFSQYNQLF 533

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
              +GD +L  + +R+  L    + L R++G+ F  I +S  +      FA  ++  ++ 
Sbjct: 534 SADIGDRILHEVVQRLSRLF--GNYLYRINGDVFLGITLSGEDE---TSFATKLQTLLSS 588

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRS 702
           P+       T+        + ++  +   +L   + AM +AK  G      +  +     
Sbjct: 589 PVTAGHATFTLRVRTAVCLYPANGPSPEILLDRIQSAMRYAKESGQKIMFYNDELDEIIR 648

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I   L  A++   L + Y PI+ L        E L++      G  S+ + + +AE
Sbjct: 649 SEADIITRLEAAIKEETLEVWYQPIMHLATGSFSTAEVLVRLPDGNGGFFSAGQAVALAE 708

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              M+  +  ++L R  R I +      +    I +N++ + LL   + + + ++I  + 
Sbjct: 709 RSGMVDQLGNYVLSRAGRFINAQGKALGLKN--IHVNLSVQQLLVENISDHLLSIIRASG 766

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               +I L  +ESV++ + E +   L  LR+ GI + LDDFG   S L+YL  +P D +K
Sbjct: 767 ADNGQITLELTESVLIQSIEHASSTLEALRQAGIQIALDDFGVGYSSLNYLFNLPVDVIK 826

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL      + K+ A+L SI+ MA+    T++A+ +    + +E+   G  YIQ  + 
Sbjct: 827 IDRSLTQQICTSHKQRALLNSIVEMAEVNALTVVAEGVETLEEQREVAASGVQYIQGYYY 886

Query: 941 ASPLGFNSILKLLKER 956
           A P+   ++ K L ++
Sbjct: 887 ARPMCEEALTKFLSQK 902



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 96/304 (31%), Gaps = 25/304 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+ N   F   L   L     D +    +     + Y +++ ++G A     L S+
Sbjct: 289 DIQTGLYNLPGFTAALDGWLSD---DSSGPVYLFYFVYESYNQVSQLIGPAEESIFLKSI 345

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+   ++ P I  RL    F I +  + +  +  DFA  +   + +   L  +++ +T
Sbjct: 346 PERLNAFIQSPFIAGRLGDGNFAIAVCEDMSLNQQEDFAKGVTLELLLRTRLNGKKLFLT 405

Query: 656 ASIGFASWTSSKITSSEMLKN--------------AELAMYHAKHRGGNHVESFRVSSFR 701
               +   ++ +  + + +                A       +                
Sbjct: 406 THYQYRHCSAGRNQAEKEITALVHSYYEHRSSESPAHRLTEKCRQLIAGQNNVTFDEYTD 465

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW-DHPKWGNISSSEFMLI 760
            + + + +      +  E    + P+  + +      +A +      K         +  
Sbjct: 466 LEMMELSKTFNQYRKQVEQLAYFDPVFNVGNRSKYQRDANMLISYDKKRPFSLFCVDICA 525

Query: 761 AEELCMI--KAINLFMLERIARDIISWRDQAN---MPPIFILINIASKDLLDNELCEGMQ 815
             +   +    I   +L  + + +              +F+ I ++ +D  +      +Q
Sbjct: 526 FSQYNQLFSADIGDRILHEVVQRLSRLFGNYLYRINGDVFLGITLSGED--ETSFATKLQ 583

Query: 816 ALIS 819
            L+S
Sbjct: 584 TLLS 587


>gi|21231226|ref|NP_637143.1| hypothetical protein XCC1777 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768767|ref|YP_243529.1| hypothetical protein XC_2459 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991882|ref|YP_001903892.1| signaling protein [Xanthomonas campestris pv. campestris str. B100]
 gi|21112872|gb|AAM41067.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574099|gb|AAY49509.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167733642|emb|CAP51847.1| signaling protein [Xanthomonas campestris pv. campestris]
          Length = 618

 Score =  340 bits (871), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/422 (21%), Positives = 179/422 (42%), Gaps = 11/422 (2%)

Query: 539 TGIPNRQSFLDRLTT-ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           TG+PNR  F + L   +L  +A        V +   D ++ +   LG    D  +    +
Sbjct: 180 TGLPNRARFSEDLDAVLLQRTADSAATAIAVDLCGSDYFRDMVKALGWDYADGYVALAYK 239

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           R+   L     L RL    F  ++    + L+++     + K    P+       T  AS
Sbjct: 240 RLISKLPAGTALYRLDTTTFAFMVT-TADPLRLSALCSKISKGFVAPLEHQGIPHTAVAS 298

Query: 658 IGFASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
           IG         +  T   +  + ++A  H         E       R+   ++       
Sbjct: 299 IGAVLLETSYGAADTLRSLTTSVDVAREHCLTWS--LYERKHDVVQRNTFRLLAALPAAL 356

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
             +++L L Y P + L D   V +EAL++W HP  G +  S+F+ +AE+  +I  I  ++
Sbjct: 357 ASSNQLRLHYQPRVDLHDHRCVAVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWV 416

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +++       W+ Q       + +N+++ DL        ++  + +    P R+++ F+E
Sbjct: 417 IDQGIAQAARWQQQGLD--FNLALNVSAADLDQPGFVGLLRRGLDRHKLDPRRLEIEFTE 474

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           S ++ +PE     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +    + 
Sbjct: 475 SAMIRHPEHLSEQLAAVAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFVRSLPDS 534

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   
Sbjct: 535 RTDRTLVPAMIQLGHSLGQRVVAEGIESAQAYAQLRSWGCDEGQGYWIAKPMPAAALEAW 594

Query: 953 LK 954
           L+
Sbjct: 595 LE 596


>gi|297582833|ref|YP_003698613.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Bacillus selenitireducens MLS10]
 gi|297141290|gb|ADH98047.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Bacillus selenitireducens MLS10]
          Length = 675

 Score =  340 bits (871), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 115/567 (20%), Positives = 220/567 (38%), Gaps = 56/567 (9%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +    D  +  D          +   +L ++   + G    W   +  +          
Sbjct: 131 ILESMTDAFFAVDQNWRFTFLNQEAEKLLQVSRSGLIGQNI-WT--VFPDALGTTIQFHY 187

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             V   +   Q+E      D    W  +   P                DI+E+K S + I
Sbjct: 188 ETVVDMKLAKQFETYFEPLD---KWFEVHAYPRHQG-----GLAVFFKDISEKKASEQQI 239

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LTG+ NR+   +++  I+        +  ++  +D++ +K INDV G   GD
Sbjct: 240 WEMANLDELTGLANRRFIYEKMNGIIQK-----RIPFSLFFMDLNDFKDINDVYGHDAGD 294

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
            VL  +  R+  L +    + ARL G+ F  ++    +      FA  +   I   +++ 
Sbjct: 295 QVLQKIGERLQALQEESGGVAARLGGDEFVFMIAEL-DHEVTGHFAERLLNLIRKRMSVS 353

Query: 649 ER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR----GGNHVESFRVSSFRSD 703
                ++  SIG A +  + +  +E++  A+ AMY AK      G        +      
Sbjct: 354 GYYAFSMVGSIGIAMYPETGMNVNEIMSAADAAMYEAKKSKSVTGTYRFYEISMREVIKR 413

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+++ +D+  A++  + Y VY P I +    + G+E L +W HP+ G I   EF+ +AEE
Sbjct: 414 RIVMGDDMLTAIDRGDFYYVYQPQINMKTGLVDGVEVLSRWKHPQLGMIPPPEFIELAEE 473

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I+ +    +  + + +  WR         +  N++S  +        ++  ++    
Sbjct: 474 TGKIRPLTERTIRDVLKTVDGWRRDWGY-DGRVAFNVSSSLIESPSFFTFIKEQMTYFKI 532

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              +++L  +E+V +   E     L + R IG+SL +DDFGT  S +S+L  +P D +K 
Sbjct: 533 GRDQLELEITETVNLAASEALAYHLDQFRHIGVSLAIDDFGTGFSKISHLSRLPVDRIKV 592

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDI---------------KE 926
           + + +          AIL ++I +   +              +               + 
Sbjct: 593 DRTFINEIGSGSKGEAILYAVIDL---MN------------QLEVDVVAEGVEEEEQVRV 637

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L    C +IQ  + A P      +  +
Sbjct: 638 LMGRNCSHIQGYYYARPTEEEEAVSYI 664


>gi|312143503|ref|YP_003994949.1| diguanylate phosphodiesterase [Halanaerobium sp. 'sapolanicus']
 gi|311904154|gb|ADQ14595.1| diguanylate phosphodiesterase [Halanaerobium sp. 'sapolanicus']
          Length = 557

 Score =  340 bits (871), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 209/435 (48%), Gaps = 9/435 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +      A+ +  TG+PN+ +  + +   +     D+     + ++ I+    I  + 
Sbjct: 122 RQVIKNRKIAYFNQETGLPNKSTLKNVIDNKI-----DNKKEFHLFILTINNLLNIYKLT 176

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +   D +  L   I +       +  ++ N +GIIL  +     + +F+    K +  
Sbjct: 177 GFSNFTDYMDLLIEHIKQYPALGKQIYYINENHYGIILDKDK-VDDLVEFSNDFLKYLDK 235

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-FRS 702
           P+N     I    ++G  ++      + +++  A L++  AK++         ++   ++
Sbjct: 236 PVNFGNISIYNNFTMGITTYPDYAKKTDKIINQAFLSIKKAKNKKLPFWHYENINFKEKN 295

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + +  ++  ++EN+   + Y P I L + ++   EAL++W+HP  G IS  +F+ + E
Sbjct: 296 INLDLLAEINNSIENNNFEIYYQPKINLKNNKVQTFEALLRWNHPGKGYISPGDFIPLVE 355

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I+ +  +++  + +DI +++ + N     I INI++++L      E +   + +  
Sbjct: 356 KSSLIEPLTEWVINEVLKDISNFKAKNNSFKYDIAINISARNLQQPNFVELLIDYLKQYN 415

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P R  +  +E+ +M   +++   L +L++ GI++ LDDFG   S L YL  IP D +K
Sbjct: 416 VNPERFSIELTETDLMVEIDKNIKKLNQLKEKGINIYLDDFGKGYSSLKYLKEIPIDFIK 475

Query: 883 FNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +   T+++ +  I+RSII +A  +   ++A+ +  E  ++ L  + C+Y Q    
Sbjct: 476 IDQYFIKNLTKEKKSLDIVRSIIELAHALNIEVVAEGVETEAQLEVLKDINCNYAQGYLF 535

Query: 941 ASPLGFNSILKLLKE 955
           A P     I++ LKE
Sbjct: 536 AKPDKKEKIIEFLKE 550


>gi|300024579|ref|YP_003757190.1| diguanylate phosphodiesterase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526400|gb|ADJ24869.1| diguanylate phosphodiesterase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 571

 Score =  340 bits (871), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/577 (20%), Positives = 220/577 (38%), Gaps = 73/577 (12%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFR 465
            + A+   G ++   D     +      A + G +   + G     L    H +    + 
Sbjct: 38  FASALDQFG-VISITDPNGRILHVNDAFARLSGYSRSELIGESHAILNSSHHPS--AFWA 94

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
               +    R    + +   R  + + +W+   I P+ + NG +  Y+ +  DITE  + 
Sbjct: 95  DAYRTLKAGR--PWRSQVMNRCKNGRTYWIDALIVPLISRNG-LKGYLSVQRDITELLRL 151

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKINDVLG 584
                             R      + + L  +  D N   +V   D D      ND   
Sbjct: 152 ------------------RSELD--VNSALLRTIVD-NFPGSVAAFDKDHNLLLCNDRQ- 189

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                DV+   +  IG+  +  +   R           +E  +  I  +      +   P
Sbjct: 190 ----LDVISCSSETIGDFPQNAEDFYR------AEARRNECAAADIEAYVRNQIAAATGP 239

Query: 645 INLLEREITVTASI-----------GFASWTSSKITSSEMLKNA-----ELAMYHAKHRG 688
           +           S+           GF S  +   +  + L  +     + A      R 
Sbjct: 240 VAQSIERRHSDGSVTATRTIPLPRGGFVSIVTDASSCRQSLAASSQPSHDDAQIEPLERS 299

Query: 689 --------GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
                                  R+ ++ ++  A+ N+   L Y PI+ +   +IVG EA
Sbjct: 300 TSLTGAQENAAFFGPLSDGQHDQRMQMETEMREALANNAFELHYQPIVNIKTRKIVGCEA 359

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP+ G I +SEF+ +AEE  +I  I  ++L+    +   W D      I+I +NI
Sbjct: 360 LIRWRHPERGLIPASEFIPVAEECGIIGQIGDWVLKTACAEASRWPD-----DIWIAVNI 414

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++       L + + AL  +     SR+ L  +E+++M + + +   L RL+K+G+   +
Sbjct: 415 SAAQFSGGNLVDKILALSKR--LPASRLVLEITETLLMKDRDSAAATLERLKKLGVRFAI 472

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDI 918
           DDFGT  S LSYL   PFD +K + S ++ +  ++ +    RSII +  N+  T +A+ +
Sbjct: 473 DDFGTGFSSLSYLQSFPFDKIKIDRSFVSNTANQKRSATLRRSIIQLGYNLGMTSVAEGV 532

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  +  L   GC   Q    +  +    I +L  +
Sbjct: 533 ETKQQLDLLRAEGCIEAQGFLFSPAVPSEKIRELFSQ 569


>gi|289670497|ref|ZP_06491572.1| Putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 573

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 112/407 (27%), Positives = 180/407 (44%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGNRGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +       + S +L
Sbjct: 88  DEMIVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|84499891|ref|ZP_00998157.1| signal transduction protein containing a membrane domain an EAL
           anda GGDEF domain-like [Oceanicola batsensis HTCC2597]
 gi|84391825|gb|EAQ04093.1| signal transduction protein containing a membrane domain an EAL
           anda GGDEF domain-like [Oceanicola batsensis HTCC2597]
          Length = 603

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 97/431 (22%), Positives = 183/431 (42%), Gaps = 10/431 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   +  D LT + NR SF +++   L+ +          ++IDID +K  ND+ G  
Sbjct: 171 ARLKRISETDALTQLENRTSFENKVRAELEAAPES----AAFLIIDIDHFKLTNDLYGHQ 226

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPI 645
            GD  L ++ R +G       I+ RL G+ FG+           +       R +I    
Sbjct: 227 FGDTYLTTIARALGASFPETSIIGRLGGDEFGVFTPIPTGGRAYLDGLLARCRSNIQRAT 286

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-RSDR 704
             L +      SIG + +       S +   A+ A+Y AK+ G      +  +   + + 
Sbjct: 287 ATLSKPDMGHVSIGASQFPDHATRYSTLYDQADSALYAAKNAGRGVSTVYDPTHHKQYNN 346

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             + +    AVE  ++   + PI+ L   +  G E L +W       +  S+F  I  + 
Sbjct: 347 SQLGQQFLDAVERHDILPCFQPIVDLTTGDCAGFEILARWRDSSGHKLIPSQFSAIFRDH 406

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            + + +   +++R  RD            + + +N+   DL++ E    +Q+ I++T + 
Sbjct: 407 ALAEKMTRAIMQRAFRDHARAVAPTGR-ALSLALNVTFFDLMNPEFAFEVQSTIAETGFD 465

Query: 825 PSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            S + +  +E +++G P  +    L  LR+ G  + LDDFGT    L +L   P D +K 
Sbjct: 466 WSLLTIEVTEQIMLGEPNGQVFRSLNELRRRGARIALDDFGTGYGGLRHLAQWPVDILKI 525

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   + G +  ++  AIL +I  +A+ +   ++A+ I     +  L   GC Y Q     
Sbjct: 526 DKYFVDGISAGDRDRAILETITDLARRLGIDVVAEGIETPDQVTGLRDRGCRYGQGFLFD 585

Query: 942 SPLGFNSILKL 952
           +PL  + +   
Sbjct: 586 APLAGDDLPGF 596


>gi|166712071|ref|ZP_02243278.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 573

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 112/407 (27%), Positives = 179/407 (43%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 28  LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGTRGKLWRHGS 87

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +         S +L
Sbjct: 88  DEMIVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTAVSTLL 147

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 148 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 207

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 208 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 266

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +N+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 267 DFSIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 326

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 327 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 386

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 387 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 433


>gi|322613992|gb|EFY10928.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617884|gb|EFY14777.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625501|gb|EFY22327.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629966|gb|EFY26739.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632145|gb|EFY28896.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636505|gb|EFY33212.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643139|gb|EFY39713.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644640|gb|EFY41176.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651336|gb|EFY47720.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652748|gb|EFY49087.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659049|gb|EFY55301.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663249|gb|EFY59453.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668735|gb|EFY64888.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674461|gb|EFY70554.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678332|gb|EFY74393.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682410|gb|EFY78431.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684124|gb|EFY80130.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192320|gb|EFZ77552.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196252|gb|EFZ81404.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201400|gb|EFZ86466.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206490|gb|EFZ91451.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212082|gb|EFZ96909.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216987|gb|EGA01710.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220352|gb|EGA04806.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224399|gb|EGA08688.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228329|gb|EGA12460.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233404|gb|EGA17497.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237135|gb|EGA21202.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243650|gb|EGA27666.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246106|gb|EGA30093.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250886|gb|EGA34764.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257621|gb|EGA41307.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261828|gb|EGA45395.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266115|gb|EGA49606.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268659|gb|EGA52126.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 668

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 192/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  +  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALMEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|325918991|ref|ZP_08181056.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534796|gb|EGD06727.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 604

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 203/477 (42%), Gaps = 14/477 (2%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  I   P    + + L ++    D+   +          ++D  TG+P
Sbjct: 112 LQLKDGHRIGTLCVIGTSPRDGLDAEALTHLRGLRDLAVLRVENLRSTT--YRDGPTGLP 169

Query: 543 NRQSFLDRLTTILDLSATDD-NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           NR  F + L   L    T        V +   D ++ +   LG    D  +    RR+  
Sbjct: 170 NRSRFGEDLDAWLSQRDTAPATTAVAVDICGSDYFRDMVKALGWDYADGYVTLAQRRLAA 229

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L    +L RL    FG +  ++  S +++     + K+ A P++      T  ASIG  
Sbjct: 230 YLPAKTMLYRLDPTTFGFL--TQAESQRLSSLCTKVSKAFAEPLDHQGIPHTAEASIGAV 287

Query: 662 SWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           S  +S   +  + ++   A+     + +  +  E     + R+   ++          S+
Sbjct: 288 SLQTSYGAADTL-RSLTTAVDVSRERCQAWSMYERKHDVAQRNTFRLLAALPAALDSASQ 346

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L D   V +EAL++W HP  G +  S+F+ +AE+  +I  I  ++++   
Sbjct: 347 LRLHYQPRVDLNDNRCVAVEALLRWQHPMIGPVMPSDFVPMAEKTALINRITAWVIDNGI 406

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                W++Q       + +N+++ DL        ++  + +    P R+++ F+ES ++ 
Sbjct: 407 AQAARWQEQGLD--FNLALNVSAADLDRPGFAGLLRRGLERHKLDPRRLEIEFTESAMIR 464

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIA 897
           +P+     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +    +      
Sbjct: 465 HPDHLAEQLATVAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDNRTDRT 524

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 525 LVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLQ 581


>gi|56415517|ref|YP_152592.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|56129774|gb|AAV79280.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 657

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 220 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 275 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 335 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 394 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 454 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 572 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 630

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 631 GFLFARPVPADIFEERYLSHENPDYKS 657


>gi|167898834|ref|ZP_02486235.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Burkholderia pseudomallei 7894]
          Length = 460

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/460 (20%), Positives = 190/460 (41%), Gaps = 23/460 (5%)

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           M  + G   R + + +  TE  + +  +      D LTG+ +R  F   +   L     +
Sbjct: 1   MRGARGGSGRVLVLKSLATE-HELVRRLAWQTTHDPLTGLASRAEFERHVGFALAADVRE 59

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
                 ++ +D+D+++ +ND  G A GD +L +L  R+       D++ARL G+ F ++L
Sbjct: 60  P---VALLFVDLDRFRIVNDTCGYAAGDAMLAALAARLVSCAASADVVARLGGDEFCVLL 116

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAEL 679
            + + +  ++                  +  +VTAS+G A            + ++ A +
Sbjct: 117 DARDEASAVSAAERLRASVDGFVFVWDGQPFSVTASVGVALLGGPGRAPRVEDAVRLAGI 176

Query: 680 AMYHAKHRGGNHVE----SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           A   AK RG N V+         +     V     +  A+E  +  L   PI+    +  
Sbjct: 177 ACDVAKARGRNRVQLADPHDHELAHHISDVSWCARVRQALEYDDFRLYVQPIVDTATQGA 236

Query: 736 VGL------EALIQW--DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            GL      E L++      + G      F+  AE   ++  I+ +++  +   +   R 
Sbjct: 237 TGLPRARRGELLLRMGALGEREGVAPPGLFIRAAERYGLVTDIDRWVVRTVLDALARTRS 296

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +         IN++   + D    + +    ++T  + + I    +E+  + N   +   
Sbjct: 297 RRFSE---YAINLSGISIGDERFLDYVLEQFARTRVAHALICFEITETAAIANLAGALRF 353

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPM 905
           +  L+ +G    LDDFG+  + LSYL  +P + +K +GS +TG      +  I+ SI  +
Sbjct: 354 MHELKALGCRFALDDFGSGMASLSYLKQLPVEYLKIDGSFVTGIANDAASLDIVASINDI 413

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
              +    IA+ +     +++L  +G DY Q  ++  P+ 
Sbjct: 414 GHAMNCKTIAEYVDSAATLQKLAALGVDYAQGYYIGRPVP 453


>gi|268678909|ref|YP_003303340.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268616940|gb|ACZ11305.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 933

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 101/533 (18%), Positives = 209/533 (39%), Gaps = 36/533 (6%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGYRRGRLQY 481
           + +     +     + G +   + G           +D D      L + +  ++   + 
Sbjct: 423 VDKVITYVSEPFCAMAGFSKEEILGQSHRIFR---PSDADPSLYDDLWATIR-KKEIWKG 478

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             +      Q H++   I P+ + NG+IL YI    DITE     E I+   F+D LTG 
Sbjct: 479 ITKGVNKSGQTHYLQNTIMPILDENGEILEYICAHFDITELV-LKERIIEKHFKDELTGF 537

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR++   RL          D+    +++I++  + +IND LG  VGD++L  + R +  
Sbjct: 538 GNREALFYRLN--------LDHQPKLLVLINLVGFSEINDYLGYDVGDELLKYVGRFLAT 589

Query: 602 LLKF-PDILARLSGNRFGIILISENNSLKIAD--FAIAMRKSIAMPINLLEREITVTASI 658
                 D++ R++G+ F I+L   +      D     ++++       +   E+ +  ++
Sbjct: 590 SFHNCSDVVFRINGDEFAILLCGNDLKNDGIDAFITKSVKELEKKVFTIHGYEVVLRLNV 649

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGG----NHVESFRVSSFRSDRVMIKEDLCLA 714
           G A        +  +   + +A+  AK           E   +       +   + +  A
Sbjct: 650 GVA----EGRDAK-VYMRSHIALKEAKKENKLILFYRDEDEGLKQKTKHNLYTIQKIKYA 704

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +EN  +   +  I      +I   E L++        +S   F+  A++  + + +   M
Sbjct: 705 IENDRIVPFFQGIYDNTLHQITKYEVLMRLQEEDGSYLSPYHFLEQAKKTRLYEKLTKIM 764

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++++              P    IN+   D+L + + E +   I        R+ L   E
Sbjct: 765 IQKVFAYFK-------DLPFDFSINLTKGDMLSSSVKESLFEHIKNFQC-GHRVILEIVE 816

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--ST 892
           S  + N       +   +K+G  + +DDFGT  S  SYL  +  D +K +GSL+      
Sbjct: 817 SEGIENFHEIIHFIYEAKKLGCRIAIDDFGTGYSNFSYLIKLDIDFLKIDGSLIRDIHIN 876

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           E    ++ +++  A  +   ++A+ +       +L  +  ++ Q    + P+ 
Sbjct: 877 EVNFMMVDTMVSFAHKMGYKVVAEFVDNPEVQAKLESLHVNFSQGYLFSKPMP 929


>gi|238921899|ref|YP_002935413.1| phosphoglucosamine mutase [Eubacterium eligens ATCC 27750]
 gi|238873571|gb|ACR73279.1| phosphoglucosamine mutase [Eubacterium eligens ATCC 27750]
          Length = 730

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 194/430 (45%), Gaps = 19/430 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D  T +P R++F       +      DN    ++ IDI+ +  IN   G   GD++L+
Sbjct: 18  NYDLATNLPLRRTFWRIADKTVLF----DNKTYCILAIDIENFHLINKWYGRETGDELLI 73

Query: 594 SLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN-LLERE 651
            +   +  +      +   + G+ F +I    ++          +RK I+  +N     +
Sbjct: 74  EIGEALKSIDAGYGTISGYMGGDNFCVIFEENDD------VINLIRKRISGIVNGYRGHD 127

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           IT  A  G        IT+ EM   A  A+  AK R    +  +  S  R       +  
Sbjct: 128 IT-RAYYGAYKTADKDITTGEMCDYAYGALEIAKQRPDKDIFWYDESMAREQEAEAKLMP 186

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++C A++N E      P   L   +I+G EAL++W  P+ G IS  +F+ + E+   I  
Sbjct: 187 EICSAMDNGEFTFYLQPKCILQTGKIIGSEALVRWISPEKGFISPGQFIPLLEKNGFINK 246

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +++++ +++ + I  W D+     + I IN++  D+   ++   ++ +I K   S   I+
Sbjct: 247 LDVYIWDKVCQTIRRWLDEGRTV-LPISINVSRADIYSMDVVRILKGMIEKYNISTEYIE 305

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES  + N    +      +  G  + +DDFG+  S L+ L  I  D +K +   + 
Sbjct: 306 IEITESAYVENGSVIKDTEKAFKNAGFKILIDDFGSGYSSLNMLKDIDADVLKLDMKFLD 365

Query: 890 ---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + +K ++I+ +++ MA+ ++   IA+ I  +  +K L  +GC+Y Q  +   P+  
Sbjct: 366 LNPENNDKGVSIITAVLDMARQLDIPAIAEGIETDEQLKLLEILGCEYAQGYYYYRPMPI 425

Query: 947 NSILKLLKER 956
           +   KL+ ++
Sbjct: 426 SDYEKLVDDK 435


>gi|218135189|ref|ZP_03463993.1| hypothetical protein BACPEC_03094 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990574|gb|EEC56585.1| hypothetical protein BACPEC_03094 [Bacteroides pectinophilus ATCC
           43243]
          Length = 563

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 104/558 (18%), Positives = 199/558 (35%), Gaps = 26/558 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +      D ++ +D+  +    +        ++   +       +  ++  DR     
Sbjct: 18  FEIIKECMDDYLYIFDLQNNIFEISQSAVERFNISKNVLTDAANEVMKVVYEEDRRMLAK 77

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R       +R    +    W+  R   + +  G     IG  N+   ++++ 
Sbjct: 78  HLADICEGRENVHNLHYRWLDKEGMPVWINCRGIVIIDQQGKAEYLIGCLNETGNKRRA- 136

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    DN+TG+     FL  L      +  +   +   M I ID +  IN   G  
Sbjct: 137 ---------DNVTGLLGGSEFLAYL-----RAQKEPITKGFFMHIGIDDFGAINSSRGAD 182

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            G+ +L S+   + E L     +  L  +++ I+ +  +++         +   +   I 
Sbjct: 183 YGNYILKSVAGCMKECLSDKQRIYHLVADQYVIVDLEASSAEDAVALKEKITDKLRNFIV 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
               E   + SIG     +    + E  K  E A+  AK  G N    F    +      
Sbjct: 243 AENYEAIFSISIGVIDAATFCEGAEECRKKFEFALKQAKSMGKNGFYIFDQDDYEDFLRQ 302

Query: 707 --IKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQ---WDHPKWGNISSSEFML 759
             I   L  A+ N      + Y PI+    E+++G EAL++           +S  EF+ 
Sbjct: 303 GRIIATLRNAIVNHYDGFEVYYQPIVDCQSEQLIGAEALMRFSMITEEGREFVSPMEFIP 362

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I     ++L   A      +    +P   + +N++   +L  ++   +   I 
Sbjct: 363 LLEETGLIIPAGRYILNEAAAMCCEMQK--YIPDFRMNVNVSYVQILQGDVERDILDAIQ 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K    P  + +  +ES  M            L K GI   +DDFGT  S L  +  +   
Sbjct: 421 KYSLQPECLCVEMTESGFMDMTPSFCKFRKTLDKNGIPFVIDDFGTGYSNLHCIRDMNPS 480

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +        ++++   + ++II M  +I   I A+ I  +    ++  M  DY+Q 
Sbjct: 481 YVKMDRDFTAKAMNSDRDYELYKNIISMVHSISVRICAEGIEEKEWFLKMKEMKVDYLQG 540

Query: 938 SHVASPLGFNSILKLLKE 955
            +   P G    L+    
Sbjct: 541 YYFGRPCGKKQFLQQYAS 558


>gi|167990839|ref|ZP_02571938.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197262974|ref|ZP_03163048.1| protein YhjK [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197241229|gb|EDY23849.1| protein YhjK [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205330778|gb|EDZ17542.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|312914639|dbj|BAJ38613.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226667|gb|EFX51717.1| Protein yhjK [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323131975|gb|ADX19405.1| protein YhjK [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 668

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|291519095|emb|CBK74316.1| diguanylate cyclase (GGDEF) domain [Butyrivibrio fibrisolvens 16/4]
          Length = 719

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 109/570 (19%), Positives = 221/570 (38%), Gaps = 39/570 (6%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVT---TTPDIATILGLASGSMHGPIR-NWLPYIHI 458
           D ER+  A+         +  +  RV     T  +  I+G+    +      +     H 
Sbjct: 8   DVERK--ALEKLNIPFVIYQFIDKRVYTLLVTDGMCAIMGMKREEVVELFDTDMYRDTHP 65

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNG----DILRYI 513
           +D+         F      +    +R +    + +  +          NG      +  +
Sbjct: 66  DDKARVADAAFKFASG-GEKFDVVYRSMSHIMHDYVIIHSHGAHFFTDNGIMLSTTMYMV 124

Query: 514 -GIANDITE-----------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            GI  D+T               + E ++ + F D LTG+PN   F+ +L          
Sbjct: 125 EGIGGDVTNPLTEALASNFNSLMTKESLIRDNFYDTLTGLPNMSYFI-QLADAAKKRLFS 183

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
               P V+ +D+   K  N+  G+  GD +LV     + +     D   R+  + F + L
Sbjct: 184 VGKIPAVLFMDMVGMKFFNEKYGLREGDILLVEFANLLRKYASNED-CGRIGQDHFAMFL 242

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +++    +      M+           R + V   I  AS+    +++S  L  A++  
Sbjct: 243 CADDIESIVEQLFNDMK------YVNDGRTLPVHIGIYSASFED--VSASTALDRAKIVC 294

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
              K    +    +        +    +  +   A+E   +   Y PIIR ++ ++   E
Sbjct: 295 DMQKGIYNSSFAYYNKDVHEQTKQYDYVLNNFKKAMEERWICPYYQPIIRSINGKVCDEE 354

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +W  P  G I   +F+ + E+  +I  ++L++++R+  D+ ++     MP I + IN
Sbjct: 355 ALARWIDPAKGLIPPDKFISVLEDANLIHILDLYIVDRVLEDM-NYTKSLGMPLIPVSIN 413

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++  D    ++   ++  + +    P  I +  +ESV     +  +  + ++ K G  + 
Sbjct: 414 LSRFDFKLCDIISEIEKRVKEAGILPELITIEVTESVSDFESDFVKAQIAKIHKAGFKIW 473

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  S L+ L    FDT+KF+   +    + +K   I+R ++ MA  ++   + + 
Sbjct: 474 MDDFGSGYSSLNNLQEFDFDTIKFDMKFIREFTNNKKSHIIVRELMQMADKLDIDTVMEG 533

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +      K L  +G D +Q      P    
Sbjct: 534 VETLEQAKFLREIGADKMQGFFWGKPNSLE 563


>gi|311696238|gb|ADP99111.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [marine bacterium HP15]
          Length = 852

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 105/451 (23%), Positives = 201/451 (44%), Gaps = 23/451 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++ +   ++ +A  + LTG+PNR S    L  ++  S      R  V VI ++  + + 
Sbjct: 398 ARRSAELKLMDHALHNPLTGLPNRSSLEMMLNDLMLRSPER---RYGVAVIHLNNLQSVT 454

Query: 581 DVLGIAVGDDVLVSLTRR-------------IGELLKFPDILARLSGNRFGIILISENNS 627
             LG    D +L   ++              I +  +    LA L    F  ++   + +
Sbjct: 455 KTLGHRNSDRILALASKHYNAVARELPGALPIEQSDQRNFYLASLDPQTFAFVV-DADAT 513

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-H 686
             +    +   + I  PI+ L  +I +  ++G A +      ++ +++ A +A       
Sbjct: 514 GHVPRAILKALEGIRYPIDYLGMQIPLDPALGVAIFPEHGTDANTLIRRAVIAEGSDSAR 573

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             G      +  S+ +DR+ +  +L  A+  +EL L   P   L    IVG+E LI+W  
Sbjct: 574 ERGIAYYKSKKDSYSADRLTLVSELRHALNTNELALFMQPKQSLKTGRIVGIEVLIRWP- 632

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            +   + + E + +AE+  +IK +  ++LE+         ++    P+ I INI+  +L 
Sbjct: 633 GRATPLRADEIVSLAEQTGLIKPMTRWVLEQSLELRSRLLERGW--PLNISINISPNNLR 690

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +    +Q L+S        I    +E+ +M +P  S   L  L   GI +++DDFG+ 
Sbjct: 691 EPDFPIFVQRLMSSYHSHRGAIIFEVTETSMMQDPANSLRALNSLSATGIPVSIDDFGSG 750

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSY+  +P   VK + SL+T      +   I+++ I M  ++   ++A+ +  E+  
Sbjct: 751 YSSLSYIKQLPASEVKIDRSLVTELNTEAEDRVIVQTTIDMCHSLGYQVVAEGVEDEVTA 810

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             L  MGCD IQ   +  PL F+ ++  L +
Sbjct: 811 NLLRDMGCDMIQGYLLTPPLPFDEMMDWLDK 841



 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 89/329 (27%), Gaps = 9/329 (2%)

Query: 48  SITRIYV-NQGEDFQVFTAADIDGISR-RIEVSASSIRHRGDWAVFALANTSDSQLERLI 105
                          V  A   D       +           W  F ++  +      L+
Sbjct: 32  PQIEYLRVAPDNKLTVSEALASDSWQTLEEKSPNFGYIRDTVWLRFPVSQPATIN---LL 88

Query: 106 VVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEI 165
            V + +L    F   + G       T        R       +F    +  +    ++E+
Sbjct: 89  EVRYSQLDKVTFHLIENGRIARRVETGDHVPFEQRPILHRHFLFPFEQSIASEYQILLEV 148

Query: 166 STPN--LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFA 223
            T       + LW    + +  ++      +  G+   +  F    +   R  + +    
Sbjct: 149 RTEGAMQIPVRLWNAQAFFEHSSTEDQMHALYYGILITVIFFNLFIFAALREPVYLLYVL 208

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSL-IIFLFMYLHWNRWHAKV 282
                L  I    G   + +   S  L        +  S    ++F   +L        +
Sbjct: 209 STLGYLLLIGSLNGSTYQFLWPDSPALQNQIMLLAVPFSLFFTLVFSRSFLKLEHTGPVL 268

Query: 283 GYITFSGIACIAILFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVLLI 341
             +    I+  A++  M+F+    T S   + LA    L  T        KG  +A    
Sbjct: 269 NRLVLFMISLNAVVGLMTFFLDYSTGSRLTVALAIPSCLLLTVLGPVQWWKGNPQAGYYT 328

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPA 370
            AW  + +            L N+ +   
Sbjct: 329 VAWAALTLGSAITAANKYGLLPNNFVTTY 357


>gi|257470396|ref|ZP_05634487.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
          Length = 522

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 175/396 (44%), Gaps = 15/396 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTGI N+  F  + T               ++  DI+++K +ND+ G   GD +L   
Sbjct: 138 DSLTGIYNKDFFYFKCTNFFKDI---PQKNYYIVFADIERFKLVNDIYGSKQGDALLKYT 194

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I + +    I  R   + F + ++  +N  +       +  +I+  ++   + + + 
Sbjct: 195 ADVIRDEIGENGICGRSEADHFLMCIVDVSNIKE-------LLNNISKRVSEFNKNMNIV 247

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
              G        I+   M   A +A    K+R       +  S  +       +  D+  
Sbjct: 248 IHYGIYQVEDKNISIELMCDRAIIAASMVKNRYNIKYSYYDDSIRKKLLQEQIMINDMRP 307

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           ++      + Y P      E+IVG+EAL++WDHP+ G IS   F+ + E+   I  I+ F
Sbjct: 308 SLAEKRFKVYYQPKYDFKTEKIVGVEALVRWDHPQLGMISPGIFIELFEKSGFITEIDHF 367

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E   + +  W  +     + I +N++  +L +N L E +  ++ K   SP  + L  +
Sbjct: 368 VWEEACKKLKEW-KERKYENLSISVNVSRINLYNNNLPEILIDMVKKYNISPHSLHLEIT 426

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES    N E+    + RL+KIG  + +DDFGT  S L+ L  +P D +K + S +     
Sbjct: 427 ESAYTENSEQIIEGVKRLKKIGFIIEMDDFGTGYSSLNMLSKLPIDILKLDMSFVHSIEK 486

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            +    +L+ I+ +AK +   ++A+ +  E  +  L
Sbjct: 487 DKNSKIMLKVIMNLAKELNLVVVAEGVETEKQVDTL 522


>gi|167747281|ref|ZP_02419408.1| hypothetical protein ANACAC_01995 [Anaerostipes caccae DSM 14662]
 gi|167653259|gb|EDR97388.1| hypothetical protein ANACAC_01995 [Anaerostipes caccae DSM 14662]
          Length = 455

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 171/433 (39%), Gaps = 8/433 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   + +   AF D LTG  N  +F         L+A  +     V+ ++I  +K IN+ 
Sbjct: 17  RLRQKQVERIAFTDALTGGMNDTAFR---AAYEKLAARMEPSTYAVVFLNIKGFKFINEY 73

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A G+D L  +  ++   +   +I AR + + F + L  E++   I      M   I 
Sbjct: 74  FGSAAGNDTLKYIYSKLIRHICTGEIAARDNSDCFFLCL-KEHSKEAIRYRLQKMTADIN 132

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 + E   T   G       K+  + +L  A  A                ++    
Sbjct: 133 SFNASSDIEYQFTILQGIYLVDDPKLDVTIVLDRARTACRQRHGTDPCSFFHPEMAKQMQ 192

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +      +++  +  +   P +RL D  + G EAL++W HP  G I  S+F+ + E
Sbjct: 193 LEYELNTMFEDSIKKRDFQIYLQPKVRLADLTLSGAEALVRWIHPDKGMICPSDFIPLFE 252

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  ++L++ E +   +    +Q       I +N++     D         L +K  
Sbjct: 253 ENGKICRLDLYVYETVCAYLHKRIEQQKDL-FPISVNLSRAHFKDLNFLRKFSELKAKYG 311

Query: 823 YSPSRIKLSFSESVVMG--NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                I+   +E   +     E  +  + ++ ++G    LDDFG   S L+ L     DT
Sbjct: 312 IPDGMIEFELTEYSFLDKQQREMVKNCIKQMHRLGFHCALDDFGVGYSALALLKDFDVDT 371

Query: 881 VKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K +    +  +  K   I+   I +++ +   ++A+ I  +  ++ L +  C+ +Q  +
Sbjct: 372 IKLDRQFFVDMTNPKAQTIISGFIEISEKLGIHLVAEGIETKEQMELLKQFHCEMVQGYY 431

Query: 940 VASPLGFNSILKL 952
            + PL  +   K 
Sbjct: 432 FSKPLTIDEFEKW 444


>gi|88703565|ref|ZP_01101281.1| sensory box/GGDEF/EAL domain protein [Congregibacter litoralis KT71]
 gi|88702279|gb|EAQ99382.1| sensory box/GGDEF/EAL domain protein [Congregibacter litoralis KT71]
          Length = 1349

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/434 (22%), Positives = 188/434 (43%), Gaps = 15/434 (3%)

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             +D++T + N +S + +L   L  +    +     +++DID +  +NDV     GD+VL 
Sbjct: 916  NRDSITQLINGESLVYQLQRTLRHAQARGSEH-AFLLLDIDNFALVNDVFDDTSGDEVLN 974

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR-KSIAMPINLLEREI 652
               R + ++     + AR+S + FGI+L    ++ +    A  +R    A  + +    I
Sbjct: 975  EFGRLLSQMNDRRALTARMSEDEFGILLTY-RDTDEARRIADKIRVDIAASSLTINGENI 1033

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--- 709
            + T SIG AS   +  + + +++ A  A+  AK +G + V  + +         ++    
Sbjct: 1034 SFTVSIGVASVLQTSESPTSIVEQARQALSMAKGQGKDQVVVYDIDQEEVMNYKLERASS 1093

Query: 710  --DLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               L  A+    L L   PI+       +      E L+          S  +F++ AE 
Sbjct: 1094 RKRLDDAMSTDSLVLRAQPIVQSAVDGREGAKHHYEILLSLRDDDGELQSPQDFIMSAER 1153

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
               +  ++ ++L+     I    D   + P  + IN++   + DN+  + +   IS+   
Sbjct: 1154 FGYVTLVDRWVLKEAFSWISRLMDAQKVVP-ELSINLSGTSITDNDFLDYVLEQISEHGV 1212

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              SR+    +E+  + N  R+   +  L+ IG   +LDDFGT  +   YL  +P D VK 
Sbjct: 1213 GTSRLCFEITETGAIDNLPRAADFVRTLKNIGCKFSLDDFGTGLASHKYLKELPVDYVKI 1272

Query: 884  NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +G+ +T         A+ +SI  +A  +    +A+ +     +  L  +G DY+Q   + 
Sbjct: 1273 DGTFITDIHRNATDYAMTKSINDLAHFLGQKTVAECVEDLEIVPALREIGIDYLQGWGIG 1332

Query: 942  SPLGFNSILKLLKE 955
             P   + I + L +
Sbjct: 1333 MPRELHEITEELAD 1346


>gi|317064604|ref|ZP_07929089.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690280|gb|EFS27115.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 523

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 175/396 (44%), Gaps = 15/396 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTGI N+  F  + T               ++  DI+++K +ND+ G   GD +L   
Sbjct: 139 DSLTGIYNKDFFYFKCTNFFKDI---PQKNYYIVFADIERFKLVNDIYGSKQGDALLKYT 195

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I + +    I  R   + F + ++  +N  +       +  +I+  ++   + + + 
Sbjct: 196 ADVIRDEIGENGICGRSEADHFLMCIVDVSNIKE-------LLNNISKRVSEFNKNMNIV 248

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
              G        I+   M   A +A    K+R       +  S  +       +  D+  
Sbjct: 249 IHYGIYQVEDKNISIELMCDRAIIAASMVKNRYNIKYSYYDDSIRKKLLQEQIMINDMRP 308

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           ++      + Y P      E+IVG+EAL++WDHP+ G IS   F+ + E+   I  I+ F
Sbjct: 309 SLAEKRFKVYYQPKYDFKTEKIVGVEALVRWDHPQLGMISPGIFIELFEKSGFITEIDHF 368

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E   + +  W  +     + I +N++  +L +N L E +  ++ K   SP  + L  +
Sbjct: 369 VWEEACKKLKEW-KERKYENLSISVNVSRINLYNNNLPEILIDMVKKYNISPHSLHLEIT 427

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES    N E+    + RL+KIG  + +DDFGT  S L+ L  +P D +K + S +     
Sbjct: 428 ESAYTENSEQIIEGVKRLKKIGFIIEMDDFGTGYSSLNMLSKLPIDILKLDMSFVHSIEK 487

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            +    +L+ I+ +AK +   ++A+ +  E  +  L
Sbjct: 488 DKNSKIMLKVIMNLAKELNLVVVAEGVETEKQVDTL 523


>gi|239993987|ref|ZP_04714511.1| sensory box/GGDEF domain/EAL domain protein [Alteromonas macleodii
           ATCC 27126]
          Length = 434

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 185/429 (43%), Gaps = 11/429 (2%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +   +L  IPNR +F+D ++          +   ++M++D+ ++  +   LGI VGD  
Sbjct: 1   MSQHTSLATIPNRYAFIDSISK-----QASRSASISLMLVDVVRFSDVTTSLGIHVGDRF 55

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +  RI  L      + R+SG+ FGI+  +E+N   +      + +    P++     
Sbjct: 56  LLEIANRIQLLFGTAVSIGRISGDVFGIVFPNESNETVMRQMFERLVEHFKTPMHYDGTA 115

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFRVSSFRSDRVMIKE 709
                ++G      +    +  +  AE A+  AK     +    +    +     + +K 
Sbjct: 116 FIADFNVGVVCSIKNDFDITSFVSRAETALKQAKENKYENYFALTKSDKTDTGRSLALKA 175

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A+  +EL L Y P + L   E+VG E L++W+HP  G +     +  AE   M+  
Sbjct: 176 DLKRALAQNELELYYQPKVDLTTLEVVGAECLLRWNHPLDGVLFPGPLIEAAESYNMMSE 235

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  + LE+  R +           + + +NI+   L DN+L   +  L        S I+
Sbjct: 236 LGYWTLEQAFRALSEL--DLMKRSLMLSVNISPTQLYDNQLVPTLTMLSRTYSMPLSLIE 293

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E V + N    +  L  LR +G+S+++DDFG   S L+Y+  +  D +K + S + 
Sbjct: 294 LELTEDVALSNSLMVKKQLDELRSLGVSISVDDFGKGYSNLAYIRDLDLDALKIDKSFVM 353

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI+ +   +    E  ++A+ I     +  L  +G    Q    +  + F 
Sbjct: 354 ELEAHPVNRAIIEAAKVIGHAKECCVVAEGIETVEQLHILREIGVTQGQGYLFSRAIPFV 413

Query: 948 SILKLLKER 956
             ++L ++ 
Sbjct: 414 DFVQLTQQE 422


>gi|225390496|ref|ZP_03760220.1| hypothetical protein CLOSTASPAR_04251 [Clostridium asparagiforme DSM
            15981]
 gi|225043425|gb|EEG53671.1| hypothetical protein CLOSTASPAR_04251 [Clostridium asparagiforme DSM
            15981]
          Length = 1298

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/512 (18%), Positives = 210/512 (41%), Gaps = 21/512 (4%)

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH----WMIIRIRPMSNSN--GDILRY 512
            +  D+++  L   +    G L   F    +D ++      +        +    G++   
Sbjct: 783  DRYDSYKENLRRVLEQ-SGALSVLFAGLYSDGRYIGQLALVNCSKARAWDEKERGELAEV 841

Query: 513  IGIANDITEQKKSLEGILCNAFQ----DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             G+     +  ++L+     A      D+LTG+     F +     LD        R  +
Sbjct: 842  AGLIASEAKTLEALDDANRRAEYYRDVDSLTGLFTYNMFKELAQKALDQ----GVSRRVL 897

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            +  DI  +K IN  +G   GD++L      + +      I AR++G+ F  + + E+ + 
Sbjct: 898  VASDIKGFKYINSTIGYTQGDNILRMFADMMVQSSGPEVINARVNGDVFLTLGVYEDRAD 957

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                   +      +   + +  I +    G              +  A LA     +  
Sbjct: 958  FQEKLLQSNENFARLQNQIYDG-INIRVRSGVYFLDPDSREIDLAVDRANLARKSVDYIL 1016

Query: 689  GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             + V  ++ + F        +   +  A+ + E  + Y P I L D  + G EAL++W  
Sbjct: 1017 KSTVVLYKDAPFSIKLRENEMINRMEYALMHGEFQVYYQPKIYLEDGSVAGAEALVRWVR 1076

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                 I   EF+ + E+   I  I++F+L R+ R +   R++   P   I +N++  D+ 
Sbjct: 1077 EDGRVIPPDEFIPLFEKNGFITKIDIFVLRRVCRWLKE-REERGEPLFKISVNLSGVDVR 1135

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            D ++   +   + +   SP  ++   +E+  + + E+   +L RL+ +G + ++DDFG+ 
Sbjct: 1136 DEQIVSYIADQVDEFGISPEYLEFELTETAFLSDTEQIFSVLKRLQDMGFTTSIDDFGSG 1195

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             S+++ +  IP D VK + + +     +++    L  ++ M + +    + + I  E  +
Sbjct: 1196 YSIMNMVAEIPTDIVKMDCAFVQNCGKSDRGREFLSQLVLMVRKMGFVALCEGIETEDHL 1255

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              + +MGC+  Q  + + P+      + LK++
Sbjct: 1256 NMVEKMGCELGQGYYFSRPVPQPEFEEWLKKQ 1287



 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 118/276 (42%), Gaps = 7/276 (2%)

Query: 429 TTTPDIATILGL-ASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
             +  I  + G             +    +   DR      L+  +       + EFRVR
Sbjct: 68  YASQGILALYGCCGREEFQELCGGSIAGMVLAEDRRRAFGELEEQLRRNPDSSKTEFRVR 127

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D +  W+  R   +++ NG++    G+  D TE K + +     A +D+LTG+ NR +
Sbjct: 128 RRDGEIRWVDCRGSVVTDLNGNVCFG-GVLIDDTEAKMARQSYWEQARRDSLTGLLNRTA 186

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
                 T+++      N    +M++DID +K +ND  G   GD VL  + RR+  L +  
Sbjct: 187 ----CKTLINAYQDWKNQICALMIVDIDNFKTLNDTWGHLFGDTVLTEIARRLQALFRRS 242

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D++ R+ G+ F I L   N+  + A     + +SI    + L+  + VT S+G A     
Sbjct: 243 DVVGRIGGDEFIIFLRDLNDLNQPAHHGQRIVQSIGELRSALKNAVEVTCSVGIAVSPRD 302

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             +  ++L+ A+ A+Y  K  G N    +       
Sbjct: 303 GGSFEQLLERADCALYWGKRNGKNRYTVYAPHMSVW 338


>gi|251779180|ref|ZP_04822100.1| putative signaling protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083495|gb|EES49385.1| putative signaling protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 751

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 201/436 (46%), Gaps = 12/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +  + I   AF D++TG      F   +  +L     + N    ++  DI ++K IND
Sbjct: 306 RNRKEKLIKDIAFVDDITGGKTLTKFKMDIREVL---VENMNSSYALVEFDIVRFKIIND 362

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD +L  ++  +   L + ++  R+  + F ++L  ++ +  I      +  + 
Sbjct: 363 IWGYKAGDFLLKHISDILKNKLLYKEMFCRVRDDLFILLLKYKDENDLIDRI--NVLDNS 420

Query: 642 AMPINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               +   +E+   + S G      ++   ++M+ N   A   +K      +  + +   
Sbjct: 421 MRFFDDGTKEVPNFSLSYGVYVIDGTEEDINKMIDNVAFARETSKSDCNEVIGFYDIGLQ 480

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +  I++ +  A+ N +  L   P   +  E  VG EAL++W++P+ G IS  +F+
Sbjct: 481 SKLIKQKQIEDVMYSALANRQFELYLQPKYDIKLESCVGAEALVRWNNPEKGLISPIDFI 540

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQAL 817
            + E+   I  +++F+ E +   I  W+       I I +NI+  +L + +   + +  +
Sbjct: 541 PLFEKNGFIVNLDMFIFEEVCSKINEWKKNNIKL-IPISVNISRINLKNVDYFIKNISEI 599

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +K   +P+ I++  +ES +  + +     L RL+ +G S++LDDFGT  S L+ L  +P
Sbjct: 600 FNKYDINPNLIEIEITESAIFNHYDNMLEALLRLKAMGFSISLDDFGTGLSSLNILKDLP 659

Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K +   +    S++K   ++ +I+ M K ++  +I + +      + L+ +GC+  
Sbjct: 660 IDTIKLDREFLNSKDSSKKGEIVIANIVRMVKELDLNVICEGVETYEQAEFLSEVGCNNA 719

Query: 936 QDSHVASPLGFNSILK 951
           Q    A P+      +
Sbjct: 720 QGYLYARPMPVKDFEE 735


>gi|16766901|ref|NP_462516.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16422178|gb|AAL22475.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|19171164|emb|CAC86195.1| hypothetical protein [Salmonella typhimurium LT2]
 gi|267995856|gb|ACY90741.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|332990466|gb|AEF09449.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 657

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 220 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 275 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 335 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 394 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 454 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 572 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 630

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 631 GFLFARPVPADIFEERYLSHENPDYKS 657


>gi|268678895|ref|YP_003303326.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268616926|gb|ACZ11291.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 836

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/613 (18%), Positives = 233/613 (38%), Gaps = 41/613 (6%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
           +L ++     ++     +   +    L     L         I H++      + +    
Sbjct: 255 MLFYLLTKLTFLKPIHLISMTLRTHHLGYIFALSKQKNELGEIAHLIYEHEKQKKL---L 311

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E    A+     IV   +              I G +   + G   N +   H ++  +F
Sbjct: 312 EEYKEAIDE-NTIVSRTNAKGIITYANEQFLAISGYSKEELIGKPHNIVR--HPDNPSHF 368

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              +   +   +   +   + R  D   +++   I P+ + +G I  Y+ I +D+++  +
Sbjct: 369 FQEMWEVLKAGK-TWKGIIKNRRKDGSVYYVKSVIMPLLSLDGKIESYMAIRHDVSDLFE 427

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            LE +   +       +P+R+  L+++           +  P + +++I  +++IN + G
Sbjct: 428 QLEVLQQTSTL----NLPSRKHLLEQIEK---------SKYPHLAILNICDFREINALYG 474

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            A GD  L    + + + ++   ++  L G+ F +    E +      F   +   +   
Sbjct: 475 QAFGDAYLYEFAQNLQKYIRKGMVVFHLQGDEFALYCDKEVSEEAFNTFCDTLLTRLQQE 534

Query: 645 -INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSF 700
            + +  +  TV   IG A         S +   AE+A+  A++       + +       
Sbjct: 535 GLTIKNKSYTVACRIGIA------NGLSYLYNRAEIALKEARNSHKSLVIYDDRDGFQER 588

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             + +   + L  A+ N    L    I+   +        E LI+        IS   F+
Sbjct: 589 LKEDIQWNKTLREALINKRFTLFLQEIVPLHVKPNARKKYEVLIRLIDENNRVISPFHFI 648

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A+ L +   I  F+LE   +               + INI  +D+L +E    + AL+
Sbjct: 649 DLAKRLHLYAQITHFVLEESVQVA-------LHLGCDVSINITKEDILHHETTTLLFALL 701

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+       I L   ES  + +    R  L +  + G  L +DDFG+  S   YL  +  
Sbjct: 702 SQYPELKGHIILELVESEGIEDVSEVRSFLQKAHEKGCLLAIDDFGSGYSNFEYLLRLSV 761

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +GSL+    +     A +++I   AKN+   ++A+ ++    ++++  +  DY Q
Sbjct: 762 DFIKIDGSLIKNIDKDATAYATVKTISTFAKNLGIEVVAEFVHSADVLEKIKELPIDYAQ 821

Query: 937 DSHVASPLGFNSI 949
             ++  P    SI
Sbjct: 822 GFYLHEPAPKESI 834


>gi|16762687|ref|NP_458304.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|25512841|pir||AF0985 conserved hypothetical protein STY4188 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504993|emb|CAD08010.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 657

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 220 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 275 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 335 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 394 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 454 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 572 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVEDEAQRAWLEQAGVNVAQ 630

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 631 GFLFARPVPADIFEERYLSHENPDYKS 657


>gi|224585411|ref|YP_002639210.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469939|gb|ACN47769.1| hypothetical protein SPC_3690 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 668

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 188/440 (42%), Gaps = 14/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+  +   +     
Sbjct: 642 GFLFARPVPADIFEERYLSH 661


>gi|197364443|ref|YP_002144080.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197095920|emb|CAR61499.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 639

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 202 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 257 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 317 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 376 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 436 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 554 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 612

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 613 GFLFARPVPADIFEERYLSHENPDYKS 639


>gi|85711353|ref|ZP_01042412.1| hypothetical protein OS145_01502 [Idiomarina baltica OS145]
 gi|85694854|gb|EAQ32793.1| hypothetical protein OS145_01502 [Idiomarina baltica OS145]
          Length = 623

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/603 (20%), Positives = 251/603 (41%), Gaps = 40/603 (6%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
            AL+   +L  +    T +Q +         +        L + GS D VW WDI +D +
Sbjct: 44  LALLVNFLLENVRRSLTDMQSL--NEQLEDKVKERTSLLDLILAGSNDGVWIWDIAKDEL 101

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           T +    ++L L   +       W   IH  DR+ F   +          L  E+RV+  
Sbjct: 102 TLSGRWYSMLELPHDANTQSPEFWYQQIHPADRERFSNAIRRLRKGESEHLNVEYRVKTT 161

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
            + + WM+ R     ++        G   DI+  +            D  +G+PN +   
Sbjct: 162 RHGYRWMLCRGVCQKDNQQQCSIVAGTQTDISAMRI----------FDQESGMPNERYLR 211

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +R+   L     D+     ++ + ++    I +    A    +   +  R+ ++     +
Sbjct: 212 ERVEDAL-----DEQQPLFLIYVTVENIDAILNASEHASNARLYPVIQERLNQVNGVHLV 266

Query: 609 LARLSGNRFGII---LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT- 664
            ++LS   F ++        + L I D    +R + A   N  + +     ++G  + + 
Sbjct: 267 ASKLSAITFAVMGFESELTQSGLTIEDVCQQIRDNCANTHNTFKEDARFEVAVGAVASSM 326

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                S +++  A  A+  A+  G   + +    +  S R+ ++++L  ++  + L   Y
Sbjct: 327 LKVDQSQQLINYAWSALRRARQLGQTCIFTETHITQDSRRIRVEQELRRSLMQNALAPDY 386

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
             I     ++++G EAL ++ HP+ G +S  EF+ IAE+  +++ +   +L+R    I +
Sbjct: 387 QAIYAGKTKQLIGFEALARFRHPELGIVSPGEFIPIAEDSGLMRELGYAILDRTIETIQT 446

Query: 785 WRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
           W+       P +I +N+++  L D    + + A +      P R+KL  +ES ++ + + 
Sbjct: 447 WQSNALRNHPFYIAVNVSAIQLEDLYFADNVLAKLEGAGVDPQRLKLEVTESTLVESFKS 506

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRS 901
           + L L +LR+ G+ + LDDFGT  S LSYL  +  DT+K + S +    E     AI+++
Sbjct: 507 AALQLDKLRQNGVRIALDDFGTGYSSLSYLRSLSIDTLKIDRSFVAKLHENEQKAAIIKT 566

Query: 902 IIPMAKNIETTIIAKDIYG--------EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  +A  ++                    ++  L  +G   IQ   +A P+     +  +
Sbjct: 567 VYELATQLKL--------SVVAEGVEEVEELNFLNNIGDMAIQGFLLARPMPAEQAIAQV 618

Query: 954 KER 956
            + 
Sbjct: 619 SQH 621


>gi|323484783|ref|ZP_08090140.1| hypothetical protein HMPREF9474_01891 [Clostridium symbiosum
           WAL-14163]
 gi|323401889|gb|EGA94230.1| hypothetical protein HMPREF9474_01891 [Clostridium symbiosum
           WAL-14163]
          Length = 730

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 188/446 (42%), Gaps = 15/446 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++     +   + D LTG  N + F      +   SA  +    ++   DI  +K IN
Sbjct: 281 QREELYRKKMRLQYYDALTGSLNLEGFRRESGRLFSESAPQE---YSLWYCDIKNFKYIN 337

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   G+ +L      + +  +  +   R+S + F  +    +   ++ +    +   
Sbjct: 338 DLFGFHTGNRILKYWASCLKDSCREDEAFCRISDDNFAFLWR-LDEQDRLRERFNGLADR 396

Query: 641 IA--MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFR 696
           +A   P      ++ + + +         +   EML  A +A               +  
Sbjct: 397 LASFGPFEEKNYQVELISGVYIPETP-CGMDIDEMLNRANMARKSIVSPRGSRILFFTEE 455

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPII---RLMDEEIVGLEALIQWDHPKWGNIS 753
           +       + ++ ++  A++  E  L   P I    +  ++    EAL++W         
Sbjct: 456 LRKKALAGIEMEAEMRSALDKEEFVLYLQPQIKLTDVSGQKAHRAEALVRWMRNGRIYAM 515

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ + E+  MI  ++L++ ERI   I  +     +  + I +N++   ++  +  E 
Sbjct: 516 PDDFIGLFEKNGMIAELDLYIYERICILINRF-KTCGLTSVCIAVNVSRHTMMQPDFVET 574

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
             A+  +       ++L F+ES+ +   E  + +L +L+K G    +DDFGT  S L+ L
Sbjct: 575 YLAIKKRYRIEDDELELEFTESIAVEELELMQKVLKQLKKAGFICAMDDFGTGYSSLNVL 634

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K +   +   G   +R  +++S++ MAK ++   I + +  E  +  L ++G
Sbjct: 635 QILPLDILKLDKGFLACEGEDRRRQIVVKSVLQMAKQLDMLTIVEGVENEEQLHLLQKVG 694

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
           CDY+Q   V+ PL  +     +KE  
Sbjct: 695 CDYLQGFLVSPPLSEDEYRSFVKEEL 720


>gi|213161199|ref|ZP_03346909.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426518|ref|ZP_03359268.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213650198|ref|ZP_03380251.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289824315|ref|ZP_06543908.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 668

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVEDEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 642 GFLFARPVPADIFEERYLSHENPDYKS 668


>gi|167756924|ref|ZP_02429051.1| hypothetical protein CLORAM_02473 [Clostridium ramosum DSM 1402]
 gi|167703099|gb|EDS17678.1| hypothetical protein CLORAM_02473 [Clostridium ramosum DSM 1402]
          Length = 754

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 194/442 (43%), Gaps = 14/442 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KK+ + ++  A+ D LTGI N   F +     L     +++    +  +++ K+K IN+
Sbjct: 319 MKKNNQQLMDFAYLDRLTGIYNLNRFGE-----LAHQHIEEHSEYAIAALNVRKFKFINE 373

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G    D +L  + R + + +K  +++ R S + F + L+ E     +      + + I
Sbjct: 374 IFGKEQADRLLCYIGRILNDNIKDGELVCRDSADVFYMFLL-ETEKNILEVRLKEILEKI 432

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               N       +T S G A+ T  K      + +A  A+  +K+     +  F  +   
Sbjct: 433 RTSSNDSNSNYRITMSCGIATAT-DKQELQVSMTHAMFALEISKNNFKIPLWFFDAALHE 491

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +++   I+  +  A+EN E  L   P I L    +   EAL++W       I  S+F+ 
Sbjct: 492 QEKMNDYIERHMYEAIENGEFKLYLQPKIDLKTNSLASAEALVRWIRNDGTTIFPSQFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+      ++++M+E++ + +  W D+     I I IN +   L +    + +  ++ 
Sbjct: 552 IFEQNGFCVNLDMYMVEKVCQLLRQWIDE-GYQAIPIAINQSKLVLYEIGYVKNLCGILD 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     S I L   E + + N +     L  LR IG  +++DDFGT  S L+ LG +  D
Sbjct: 611 RYNIPASLITLEILEEIAIENVDDLNKKLTELRDIGFKISMDDFGTGYSSLNTLGKLNID 670

Query: 880 TVKFNGSL---MTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +K + S    +  +  +    I+  I+ ++K +    + + +    D   +  +GCDY 
Sbjct: 671 ELKLDRSFLVEIKDTRNQNARLIMEEIVQLSKKLSIFSVIEGVETSEDDLLVKEIGCDYG 730

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q  + + P+  N     +  +F
Sbjct: 731 QGYYYSRPIDSNDFTSKMLNKF 752


>gi|62182119|ref|YP_218536.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129752|gb|AAX67455.1| putative Diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716608|gb|EFZ08179.1| Signal transduction histidine kinase, HAMP region [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 657

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 188/440 (42%), Gaps = 14/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 220 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 275 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ E+   A  A + A+ +G N ++ F  +   
Sbjct: 335 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEELYGRAVSAAFTARRKGKNQIQFFDPAQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 394 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 454 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSELLELLN 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 572 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 630

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+  +   +     
Sbjct: 631 GFLFARPVPADIFEERYLSH 650


>gi|237748274|ref|ZP_04578754.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oxalobacter formigenes OXCC13]
 gi|229379636|gb|EEO29727.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Oxalobacter formigenes OXCC13]
          Length = 663

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 188/445 (42%), Gaps = 14/445 (3%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +   +D+T + +    +   A+ D++  + N   F   +   L      +     + + 
Sbjct: 212 AVFTGHDVTHRLEYESKLKKLAYFDSMLDVGNAAGFHRNVELAL-----REGKNAHLCLA 266

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            I  +  +N + G   GD +L S      + +       R+ G +F  +    ++  K  
Sbjct: 267 SIKNFNNVNMLYGRERGDFILKSFASGFLKHV-PDGRAYRVGGCKFAFV---TDSPEKGM 322

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GG 689
                + K + + +    +   +        +     T   +L +AE  +        G 
Sbjct: 323 TVLDNVWKDVCVSLPSEVKNFHIPVDSVSIEFPRFANTPEMLLIHAEYKLKTNTKSEYGK 382

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             V           R ++   +  A+++    + Y PI    ++     EAL++      
Sbjct: 383 RMVFDDHDRQMMERRFLLTSVIRKALDDETFRIFYQPIYSFRNQSYTKAEALLRLYDENL 442

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G I+  EF+ IAEE  +I  + L++LE + R ++  R +  +PP+ I IN+++     N 
Sbjct: 443 GWITPDEFIPIAEEQGLIHDLGLYVLEHVCRKLVD-RKKKGLPPVGIHINVSTVQFSKNG 501

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                  +I +    PS+I +  +ES+++ + +    ++ R    G+  +LDDFGT  S 
Sbjct: 502 FFASFMEIIDRYGIDPSQIVMEVTESIMIQSFDFIMAIMKRFIDRGVCFSLDDFGTGYSS 561

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+  +P  ++K + S +  S +      ++++++ +A+ ++  +I + +     +K L
Sbjct: 562 LNYIAALPISSIKLDKSFIDRSEKSDVYALLIKNVVEIARGLKIELIVEGVETTGQVKTL 621

Query: 928 TRMGCDYIQDSHVASPLGFNSILKL 952
           T++GC+ +Q  + + PL    +   
Sbjct: 622 TKIGCEAMQGYYFSKPLPETELDNF 646


>gi|319937818|ref|ZP_08012220.1| hypothetical protein HMPREF9488_03056 [Coprobacillus sp. 29_1]
 gi|319807048|gb|EFW03664.1| hypothetical protein HMPREF9488_03056 [Coprobacillus sp. 29_1]
          Length = 1409

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 95/416 (22%), Positives = 192/416 (46%), Gaps = 18/416 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT + N++ FL  +  IL     + + +  ++  DID++K IND+ G A GD +L  +
Sbjct: 134 DILTNVYNKEYFLSEVEYIL---QENPDKKYDLICFDIDRFKLINDLYGTAGGDRLLQYI 190

Query: 596 TRRIGELLKF-PDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   ++      I+ RL  + F I++     +  ++        +S+++        + 
Sbjct: 191 AKVYSDICMQYHWIIGRLHNDVFVILMERGSMSYEELTTAVSRQLESVSV-------NVK 243

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDL 711
           +  S G    T   +++S M   A +     K       + ++        D   I  ++
Sbjct: 244 IVLSFGIYPITDCHLSASVMCDRALMTSKSIKGNYETTYKIYQDVLRQNIMDEQTIINEM 303

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N E    Y P   +    I+G EAL++W HP+ G I  ++F+ + E    I  ++
Sbjct: 304 ENALVNHEFVPYYQPKYNIETGSIIGFEALVRWIHPQKGIIPPNQFIPLFESNGFISQVD 363

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             + E++ +D+    D+     + I +N++  +L    + E +  L+ K       ++L 
Sbjct: 364 FCIWEQVCQDLRRLLDKGYYV-MPISVNVSRIELY-LNIKEKLLYLLDKYNVPIELLRLE 421

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+    NPE+   ++ +LRK G S+ +DDFG+  S L+ L  +P D +K + + +   
Sbjct: 422 ITETAYTNNPEQLIEVVDKLRKQGFSILMDDFGSGYSSLNMLKEVPVDVLKIDLNFLQDL 481

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             + K   IL S++ M++ +  ++IA+ +  +  I  L  +GC   Q  + + P+ 
Sbjct: 482 QTSGKSEKILESVLIMSRKLSLSVIAEGVETKEQIDFLRSIGCLRAQGYYYSRPVT 537



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 120/304 (39%), Gaps = 23/304 (7%)

Query: 394  GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
             Y ++      +     + GS    +D ++  + +        +L            ++L
Sbjct: 1116 VYANKIRIQQEQYYEAIMYGSRL-YYDINLSENSIVYNDH-RNLL---EDVNEFTYTHFL 1170

Query: 454  PYI-----HINDRDNF-----RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
             YI       ND   F     R  L       +  L  E+ +     +  W  I I   +
Sbjct: 1171 EYITEKVVSPNDHQKFLHEFSRKQLMHLFKEGKTLLSREYELGTE--EKRWYEIDINLYT 1228

Query: 504  NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
              +   +       DI E+K+    +  N   D+LTG+  R +    + +I+        
Sbjct: 1229 PIDSTDICAFITTRDIDERKRYELSLEFNVKHDDLTGVYTRNAIQKYVESIIKQ------ 1282

Query: 564  LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
                VM+ID++++K IND  G   GDD L ++   + +++    ++ R+ G+ F +++  
Sbjct: 1283 KPIAVMMIDVNEFKLINDTFGHTYGDDTLRNIADVLLQVVNNRGVVGRMGGDEFIVVIDD 1342

Query: 624  ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +  +I + A  +  SI +   + + + T++ SIG A       +   + + A+  +Y+
Sbjct: 1343 FKDRQEIINMAKRINDSIHLTYVVNQEKHTLSCSIGIACSDDINNSFKRLYRQADENLYN 1402

Query: 684  AKHR 687
             K R
Sbjct: 1403 MKKR 1406



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 5/161 (3%)

Query: 377  LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
            L    +   +I    A  +  Q       +  LA   +   +WD++I   ++  +  +  
Sbjct: 972  LEGKHVVLVIIDDRSAQIHHQQETRLSEMKYKLAFEQTHRRLWDYNIKTKQLYRSKAVQE 1031

Query: 437  ILGLASGSMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
              G     +      ++   YIH +    +                  F+    D  + W
Sbjct: 1032 DTG-TPELIENVPEYFVENNYIHPDYHQGYLDFYRKISQGEDCDYL--FKALHKDGVYKW 1088

Query: 495  MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            M I    + +  G     IG   D+ E   +   I    + 
Sbjct: 1089 MHITYHVLFDEYGQPDHAIGFGEDVNEVYANKIRIQQEQYY 1129



 Score = 51.5 bits (122), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 7/140 (5%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILG-LASGSMHGPIRNWLP--YI 456
             D E    A+L     ++++D +          ++   G L+   +   ++      +I
Sbjct: 575 VDDIEWYRSAILRLDAQIFEFDFITGSMRYYDSRLSPQTGELSKIEVPNYLQRIQDGYHI 634

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +D +    IL      +       +    +D  + W  +    + N     +  +G+ 
Sbjct: 635 HPDDVEKVMYILSGHSDTKESIRAKPY---FSDESYQWYSVITHTIYNDYNQPIIAVGVM 691

Query: 517 NDITEQKKSLEGILCNAFQD 536
            +I+E K +   +   +  D
Sbjct: 692 RNISEYKLNEVSLFALSHMD 711



 Score = 45.3 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 13/121 (10%)

Query: 422  DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
            D+    +        + G     +H P  + +  +   DR      L   +  +  R   
Sbjct: 891  DMQT-LIYANKAFYQLYGYD-DDLHIPDLDVMELLVAEDRQKVIDALLDSIHTKEIRTCL 948

Query: 482  EFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIAND-----ITEQK--KSLEGILCNA 533
             +R    D     + +R + +  S  G     + +  D     I  Q+  +  E     A
Sbjct: 949  -YRGTHRDGHILSLEMRTKHLEQSLEGK--HVVLVIIDDRSAQIHHQQETRLSEMKYKLA 1005

Query: 534  F 534
            F
Sbjct: 1006 F 1006


>gi|323691856|ref|ZP_08106110.1| hypothetical protein HMPREF9475_00972 [Clostridium symbiosum
           WAL-14673]
 gi|323504063|gb|EGB19871.1| hypothetical protein HMPREF9475_00972 [Clostridium symbiosum
           WAL-14673]
          Length = 731

 Score =  338 bits (868), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 188/445 (42%), Gaps = 15/445 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++     +   + D LTG  N + F      +   SA  +    ++   DI  +K IN
Sbjct: 281 QREELYRKKMRLQYYDALTGSLNLEGFRRESGRLFSESAPQE---YSLWYCDIKNFKYIN 337

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   G+ +L      + +  +  +   R+S + F  +    +   ++ D    +   
Sbjct: 338 DLFGFHTGNLILKYWASCLKDSCREDEAFCRISDDNFAFLWR-LDEQDRLRDRFNGLADR 396

Query: 641 IA--MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFR 696
           +A   P      ++ +  S  +       +   EML  A +A               +  
Sbjct: 397 LASFGPFEEKNYQVEL-ISGVYIPENPCGMDIDEMLNRANMARKSIVSPRGSRILFFTEE 455

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPII---RLMDEEIVGLEALIQWDHPKWGNIS 753
           +       + ++ ++  A++  E  L + P I    +  ++    EAL++W         
Sbjct: 456 LRKKALAGIEMEAEMRSALDKEEFVLYFQPQIKLTDVSGQKAHRAEALVRWMRNGRIYAM 515

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +F+ + E+  MI  ++L++ ERI   I  +     +  + I +N++   ++  +  E 
Sbjct: 516 PDDFIGLFEKNGMIAELDLYIYERICILINRF-KACGLTSVCIAVNVSRHTMMQPDFVET 574

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              +  +       ++L F+ES+ +   E  + +L +L+K G    +DDFGT  S L+ L
Sbjct: 575 YLEIKKRYRIEDDELELEFTESIAVEELELMQKVLKQLKKAGFICAMDDFGTGYSSLNVL 634

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D +K +   +   G   +R  +++S++ MAK ++   I + +  E  +  L ++G
Sbjct: 635 QILPLDILKLDKGFLACEGEDRRRQIVVKSVLQMAKQLDMLTIVEGVENEEQLHLLQKVG 694

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
           CDY+Q   V+ PL  +     +KE 
Sbjct: 695 CDYLQGFLVSPPLSEDEYRSFVKEE 719


>gi|237734628|ref|ZP_04565109.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382448|gb|EEO32539.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 754

 Score =  338 bits (868), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 194/442 (43%), Gaps = 14/442 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KK+ + ++  A+ D LTGI N   F +     L     +++    +  +++ K+K IN+
Sbjct: 319 MKKNNQQLMDFAYLDRLTGIYNLNRFGE-----LAHQHIEEHSEYAIAALNVRKFKFINE 373

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G    D +L  + R + + +K  +++ R S + F + L+ E     +      + + I
Sbjct: 374 IFGKEQADRLLCYIGRILNDNIKDGELVCRDSADVFYMFLL-ETEKNILEVRLKEILEKI 432

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               N       +T S G A+ T  K      + +A  A+  +K+     +  F  +   
Sbjct: 433 RTSSNDSNSNYRITMSCGIATAT-DKQELQVSMTHAMFALEISKNNFKIPLWFFDAALHE 491

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +++   I+  +  A+EN E  L   P I L    +   EAL++W       I  S+F+ 
Sbjct: 492 QEKMNDYIERHMYEAIENGEFKLYLQPKIDLKTNSLASAEALVRWIRNDGTTIFPSQFIP 551

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+      ++++M+E++ + +  W D+     I I IN +   L +    + +  ++ 
Sbjct: 552 IFEQNGFCVNLDMYMVEKVCQLLRQWIDE-GYQAIPIAINQSKLVLYEIGYVKNLCGILD 610

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     S I L   E + + N +     L  LR IG  +++DDFGT  S L+ LG +  D
Sbjct: 611 RYNIPASLITLEILEEIAIENVDDLNKKLTELRDIGFKISMDDFGTGYSSLNTLGKLNID 670

Query: 880 TVKFNGSL---MTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +K + S    +  +  +    I+  I+ ++K +    + + +    D   +  +GCDY 
Sbjct: 671 ELKLDRSFLVEIKDTRNQNARLIMEEIVQLSKKLSIFSVIEGVETSEDDLLVKEIGCDYG 730

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q  + + P+  N     +  +F
Sbjct: 731 QGYYYSRPIDSNDFTSKMLNKF 752


>gi|261248768|emb|CBG26618.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301160154|emb|CBW19674.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 639

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 191/447 (42%), Gaps = 15/447 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 202 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 257 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 317 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 376 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 436 RIESCGLMVTVGYWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 554 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 612

Query: 937 DSHVASPLGFNSI-LKLLKERFPLVKN 962
               A P+  +    + L    P  K+
Sbjct: 613 GFLFARPVPADIFEERYLSHENPDYKS 639


>gi|78486387|ref|YP_392312.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364673|gb|ABB42638.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 671

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 105/455 (23%), Positives = 196/455 (43%), Gaps = 26/455 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + + + E +   +  D+LTG+ NR      +   L       ++   ++ ID+D++K 
Sbjct: 224 IHKVEATTEQMRYLSEHDDLTGLYNRYYIELLIQKALQDETAQHHV---LLNIDLDQFKL 280

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G + GD++L  +     ++L     +AR+ G+ F I+L + +  +  A     + 
Sbjct: 281 INDAAGHSAGDELLKMVAHSCQDMLPDSVSMARIGGDDFYILLPNHSEKIGKAIAETLLE 340

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                  +   +  +V+ASIG  ++   + T  E++K A+ A Y AK  G N +  F   
Sbjct: 341 HLSDFRFSWEGQAYSVSASIGMVAFKPFEYTLEELVKAADSAFYSAKSAGRNKLHIFHSE 400

Query: 699 ----SFRSDRVMIKEDLCLAVENS------------ELYLVYHPIIRLMDEEIVGLEALI 742
                +    V I   +  A+               EL+      ++  + + V  E LI
Sbjct: 401 DEESQYYKHEVQIASYIKEALAQGASPTPSKNTAYFELFAQGITPLQHNNRDEVSYEILI 460

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +    K   I+   F+  AE   M+  I+ F+L +    + S             IN+A 
Sbjct: 461 RLRDVKGNLIAPDAFLPTAERYQMMADIDGFVLTQYLNRVQSLPTHLTKLH-KAHINLAG 519

Query: 803 KDLLDNELCEGMQALISKTLYSPSR-IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             L + +    ++ L+S+  + P R ++L  +E+  +GN  ++   +   + +GI L LD
Sbjct: 520 SSLNNADFQARLKQLVSEHPHFPWRKLELEITETSAVGNFNQAMPFIQYCQALGIGLALD 579

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S   YL  +PFD +K +GS +          A++R I  ++       +A+ + 
Sbjct: 580 DFGTGMSSFEYLKSLPFDVIKIDGSFVKDMHSDPSDKAVIRYIQEISALRNQETVAEYVE 639

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + D+  LT +G  Y Q   +  P     + + L 
Sbjct: 640 TQEDVDVLTEIGITYGQGYFLGRPKP---LTEWLT 671


>gi|299536955|ref|ZP_07050260.1| sensory box, GGDEF family protein [Lysinibacillus fusiformis ZC1]
 gi|298727535|gb|EFI68105.1| sensory box, GGDEF family protein [Lysinibacillus fusiformis ZC1]
          Length = 674

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 227/545 (41%), Gaps = 25/545 (4%)

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGR 478
             D     +    +           + G    +      N+  +     +   +      
Sbjct: 147 TLDHDGFILECNNEFLKTSQWTPKRVIGK--TFWQLFPDNEVSEKITHTIWRNLNN-GHT 203

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            Q E        Q +W+++   P+ N   +  ++I I  D+T+ K     +   A+ D  
Sbjct: 204 WQGEVEKITKTGQSYWVLLTAIPLVNLETNEQQFILIEKDVTKSKTIQHQLEKIAYIDTE 263

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N       +T ++     DD    + + + IDK+  + ++    +   ++V  T R
Sbjct: 264 TGLMNAHRLEKVITNMI-----DDERHFSFVYLSIDKFYTLKELHDQQIDQSLIVEFTNR 318

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           I  +      +AR++ N F +I                +      PI      + ++ S 
Sbjct: 319 IK-MYFQDSTMARINENDFVVITPLSE-----WFIQGFLSYLQQHPIYSDNIAVPISISG 372

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G   +   + T S+++K +   +   +  GG+ + S   ++ ++      I++ L  A++
Sbjct: 373 GITRYPEDQSTFSQLMKASIATISTVREAGGDKIVSLSTATHKALNRKALIEKRLLQALD 432

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
              L ++Y P I +   ++  +EAL++W+    G ++  E + IAEE  +I  I  FMLE
Sbjct: 433 QKNLKVLYQPQIDVYSGKVTAVEALVRWEDEVIGVVTPDELIPIAEETGLINNIGSFMLE 492

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +     + W+       + + IN + ++  D  + + +  +I+KT    + +++  +E  
Sbjct: 493 KACEQALLWKKAGYD--LKVSINSSVREFRDKNMAKSILEMITKTGCPANLLQIEITEKF 550

Query: 837 VMGNPERSRLLLGRLRKI---GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
            +   E +  +  ++RK+   GIS  LDDFGT      Y+  +P  T+K + +       
Sbjct: 551 ALE-AEGATSIAQQMRKLENEGISFVLDDFGTGYGSFRYMQILPISTLKIDQTFTNSLLK 609

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +EK   ++  ++ + K++E  ++A+ +        L   GCD IQ  +++ P+    I  
Sbjct: 610 SEKSQKLMNGMVQLGKSMELKVVAEGVETAEQADLLITYGCDAIQGYYISKPVTPEEIEL 669

Query: 952 LLKER 956
           LL ++
Sbjct: 670 LLTKQ 674


>gi|317471025|ref|ZP_07930400.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901466|gb|EFV23405.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 458

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 171/433 (39%), Gaps = 8/433 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   + +   AF D LTG  N  +F         L+A  +     V+ ++I  +K IN+ 
Sbjct: 20  RLRQKQVERIAFTDALTGGMNDTAFR---AAYEKLAARMEPSTYAVVFLNIKGFKFINEY 76

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A G+D L  +  ++   +   +I AR + + F + L  E++   I      M   I 
Sbjct: 77  FGSAAGNDTLKYIYSKLIRHICTGEIAARDNSDCFFLCL-KEHSKEAIRYRLQKMTADIN 135

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 + E   T   G       K+  + +L  A  A                ++    
Sbjct: 136 SFNASSDIEYQFTILQGIYLVDDPKLDVTIVLDRARTACRQRHGTDPCSFFHPEMAKQMQ 195

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +      +++  +  +   P +RL D  + G EAL++W HP  G I  S+F+ + E
Sbjct: 196 LEYELNTMFEDSIKKRDFQIYLQPKVRLADLTLSGAEALVRWIHPDKGMICPSDFIPLFE 255

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E   I  ++L++ E +   +    +Q       I +N++     D         L +K  
Sbjct: 256 ENGKICRLDLYVYETVCAYLHKRIEQQKDL-FPISVNLSRAHFKDLNFLRKFSELKAKYG 314

Query: 823 YSPSRIKLSFSESVVMG--NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                I+   +E   +     E  +  + ++ ++G    LDDFG   S L+ L     DT
Sbjct: 315 IPDGMIEFELTEYSFLDKQQREMVKNCIKQMHRLGFHCALDDFGVGYSALALLKDFDVDT 374

Query: 881 VKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +K +    +  +  K   I+   I +++ +   ++A+ I  +  ++ L +  C+ +Q  +
Sbjct: 375 IKLDRQFFVDMTNPKAQTIISGFIEISEKLGIHLVAEGIETKEQMELLKQFHCEMVQGYY 434

Query: 940 VASPLGFNSILKL 952
            + PL  +   K 
Sbjct: 435 FSKPLTIDEFEKW 447


>gi|198242458|ref|YP_002217575.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197936974|gb|ACH74307.1| protein YhjK [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326625358|gb|EGE31703.1| protein YhjK [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326629910|gb|EGE36253.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 668

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 187/440 (42%), Gaps = 14/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVIARQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+  +   +     
Sbjct: 642 GFLFARPVPADIFEERYLSH 661


>gi|313899297|ref|ZP_07832810.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312955870|gb|EFR37525.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 633

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 192/458 (41%), Gaps = 12/458 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  +I     I   + +   +   A +D LT     + F+     ++    ++   +  +
Sbjct: 170 VFIFITNIRKILRLETTNRQLKDTAGRDTLTKAYTLEYFITSAEQLM---KSNTKFKYAL 226

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D   +K INDV G A GD++L      + +  +  +++ R++ + F IIL   N+  
Sbjct: 227 FYVDFSDFKYINDVFGYANGDNLLKHYAALLIKDKEHDELVGRINADNF-IILRHYNSRA 285

Query: 629 KIADFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           ++     A+  +I   +  +L  + ++++  I        K+  +E+L  A  A    K+
Sbjct: 286 ELTKRQSAVDAAIRDYMRSHLDRQALSISCGICCLEDVDEKLNLNELLNRANFARKMVKN 345

Query: 687 RGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
               +   F   S R   +    I+  +  A+ + +  + Y P + +   EI G EAL++
Sbjct: 346 GHELNNYCFYDESIRQHLLEEKSIESGMEEALSSRQFEVFYQPKVCMRTAEIAGSEALVR 405

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W   K       +F+   E+   I  ++ ++ E +   +    D+   P + + IN++  
Sbjct: 406 WRTQKGTLRMPDQFIPAFEKNRTIPQLDQYVFESVCVWLRKLLDE-GKPVLPVSINVSRL 464

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              + +  E    +          +++ F+ESV+  N ER   ++ +L   G + ++DDF
Sbjct: 465 QFCNMDFVETYAGIKKSYAIPDGLLEIEFTESVMFDNWERLTSIVDQLHSCGFACSIDDF 524

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   S L     +  D +K +          EK   ++ SII + +      +A+ I   
Sbjct: 525 GKGYSSLGMFKNLNVDVLKIDALFFHNLETEEKDRLLVESIIQLVRQFGVKTVAEGIETR 584

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
             I+ L  M CDYIQ      P+      KLL + FPL
Sbjct: 585 GQIEILKHMRCDYIQGYVYYKPMPQKEYEKLLLQLFPL 622


>gi|239628810|ref|ZP_04671841.1| sensory box sensor/GGDEF/EAL domain-containing protein
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239518956|gb|EEQ58822.1| sensory box sensor/GGDEF/EAL domain-containing protein
           [Clostridiales bacterium 1_7_47FAA]
          Length = 720

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 107/520 (20%), Positives = 214/520 (41%), Gaps = 51/520 (9%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI---- 515
           D + F T LD  +         ++R+         +          NG I+ ++G+    
Sbjct: 211 DGEFFITSLDKDLAVDSP----DYRILKDQG----IESLAAAPLKKNGQIIGFLGVDNPT 262

Query: 516 --ANDIT-------------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
               D++             E+++ ++ +   ++ D LTG+ NR SF+  L  + + +  
Sbjct: 263 ESTEDLSLLRSVCSFVLEEMERRRLIQTLELFSYTDLLTGLQNRNSFIKMLDKLSNQTLR 322

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  V+ IDI+  KKIND  G   GD V+  +   +   +       R+ G+ F ++
Sbjct: 323 S----LGVIYIDINGMKKINDSNGHEYGDQVIKKVADILKLHV--ECEAYRVGGDEFTVL 376

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +  +          + +                 SIG   W    +++ E +  A+  
Sbjct: 377 CPNM-DKQDFQALTEKLIQDFDKNKEYD-------VSIGHT-WNEGNVSADEEILKADDL 427

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           MY  K R         +   R  R  I  +L   + +    + Y P I L    I+G EA
Sbjct: 428 MYAEKQR----YYHAILQGDRMARAGIATELLRDIADHRFEVHYQPQICLKTGRIIGAEA 483

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++    +   I    F+   E   +I  ++LF+ + +  D  +W+ Q       I  N 
Sbjct: 484 LVRKRSKRGNLILPDRFIPHYERERVICHLDLFVFQTVCADWENWKKQGIET--HISSNF 541

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +   L+ +++   ++ +  +      +I +  +ES+   +P++   L+ ++   G S++L
Sbjct: 542 SRVTLMASDVVGQIKQICQEYGVPAEKITIEVTESISKLDPQQLIDLMNQIAAEGFSVSL 601

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIET-TIIAKD 917
           DDFG+K S LS L  + F+ +KF+ SL+   +       ++++ + + + +     +A+ 
Sbjct: 602 DDFGSKYSNLSILTTLDFNEIKFDKSLVDKLSSDAKSRIVMKNTMQICRELPMTRSLAEG 661

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           I     +  L +  CD+ Q  + A P+   S L+LLK+  
Sbjct: 662 IETVEQLNLLHQYHCDHGQGYYFARPMNAESFLELLKKEQ 701


>gi|238922051|ref|YP_002935565.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
 gi|238873723|gb|ACR73431.1| two-component system, PleD related family, response regulator
           [Eubacterium eligens ATCC 27750]
          Length = 563

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 105/558 (18%), Positives = 204/558 (36%), Gaps = 26/558 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +      D ++ +D+  +    +        + S  +       +  ++  DR+    
Sbjct: 18  FEIITECMDDYLYIFDLQNNTFEISQSAVERFNIPSNILTDMSNEVMNVVYEEDREMLAK 77

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R       +R    +    W+  R   +++  G+    +G  N+   ++++ 
Sbjct: 78  HLADICEGREMVHNLHYRWLDKEGMPVWINSRGIVVNDQQGNAEYLVGCLNETGNKRRA- 136

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    DN+TG+     FL  L      +  +   +   M I ID +  IN   G  
Sbjct: 137 ---------DNVTGLLGGPEFLAYL-----RAQKEPITKGFFMHIGIDDFGAINSSRGAD 182

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            G+ +L S+   + E L     +  L  +++ I+ +  +++ +       +   +   I 
Sbjct: 183 YGNYILKSVAGCMKECLSDKQRIYHLVADQYVIVDLEASSAEEAVALKEKITDKLHNFIV 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
               E   + SIG     +    + E  K  E A+  AK  G N    F    +      
Sbjct: 243 DENYEAIFSISIGVIDAATFCEGTEECRKKFEFALKQAKSMGKNGFYIFDQDDYEVFLQQ 302

Query: 707 --IKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQ---WDHPKWGNISSSEFML 759
             I   L  A+ N      + Y PI+    E+I+G EAL++           +S  EF+ 
Sbjct: 303 GRIIATLRNAIVNHYDGFEVYYQPIVDCQSEQIIGAEALMRFSMITEEGREFVSPVEFIP 362

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I     ++L   A      +    +P   + +N++   +L   +   +   I 
Sbjct: 363 LLEETGLIIPAGRYILNEAAAMCCEMQK--YIPDFRMNVNVSYVQILQGNVERDILDAIQ 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K    P  + +  +ES  M            L K GI   +DDFGT  S L  +  +   
Sbjct: 421 KYSLQPECLCVEMTESGFMDMTPSFCKFRKTLDKNGIPFVIDDFGTGYSNLHCIRDMNPS 480

Query: 880 TVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +        ++++   + ++II M  +I   I A+ I  +  + ++  M  DY+Q 
Sbjct: 481 YVKMDRDFTDKAMNSDRDYELYKNIITMVHSINVRICAEGIEEKEWLLKMKEMKVDYLQG 540

Query: 938 SHVASPLGFNSILKLLKE 955
            ++  P G    L+    
Sbjct: 541 YYLGRPCGKKQFLQQYAS 558


>gi|77362346|ref|YP_341920.1| GGDEF domain-containing protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877257|emb|CAI89474.1| putative GGDEF domain membrane associated protein, putative
           nucleotide cyclase/phophodiesterase box
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 844

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 204/451 (45%), Gaps = 14/451 (3%)

Query: 510 LRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +  + +A D T   ++    +   A  D LTG+  R +    +           ++   +
Sbjct: 401 IYILILATDSTFLLRQQSIVLHKMAKYDELTGLLRRDALNAEIE---AKQVNCVDVNCAM 457

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  ++D +  +N+ LG  +GD VL  + +R+ +       ++R   + F +   +  +  
Sbjct: 458 VFFNLDGFSAVNNSLGHKLGDMVLQLVAKRLKKNAVGAGAISRFGNDEFVLHYCNI-SKQ 516

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +++D    + KS+A   NL E +I +T S+G A      I+ + +L+ A++AM +AK  G
Sbjct: 517 QLSDEITLVIKSLADIYNLGEVDIHLTVSVGIAMSDGEVISPALLLQQADIAMDNAKALG 576

Query: 689 GNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           GN    +   +    +  V I+ +L  A++N  L + Y PI  L  + IV +EAL++W +
Sbjct: 577 GNQFCFYHKLMDESHNFMVTIRSELQKAIKNEALEVYYQPIYNLTTQCIVAVEALVRWKN 636

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS + F+ IAE+   I  +   +L ++  DI +  +      I + +N + + + 
Sbjct: 637 -NGSYISPAVFIPIAEQTGQILQVGEQVLTQVLNDISTIAEL---QNICVAVNFSPQQIQ 692

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                E +  L S+    P  + +  +E ++M        +L  L   G ++ +DDFGT 
Sbjct: 693 QRNFTEKLYKLTSEKNIQPKLLTIEVTE-MIMSEKGAIEEVLKALMNKGFNVAIDDFGTG 751

Query: 867 CSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSYL   P + +K +           ++ A+L  II +   +  T++ + +     I
Sbjct: 752 YSSLSYLSRQPANIIKIDREFTIGAELAGQKRALLEGIINICTQLNKTVVVEGVESPELI 811

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             L++     IQ  +   P+  + +++ +  
Sbjct: 812 GYLSKFNNIRIQGFYYCKPMPLDKLIEYIHS 842


>gi|225569110|ref|ZP_03778135.1| hypothetical protein CLOHYLEM_05190 [Clostridium hylemonae DSM
           15053]
 gi|225161909|gb|EEG74528.1| hypothetical protein CLOHYLEM_05190 [Clostridium hylemonae DSM
           15053]
          Length = 733

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 87/430 (20%), Positives = 173/430 (40%), Gaps = 8/430 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   AF D LTG  N  +F  +      L+         V+ ++I  +K +N+  G+
Sbjct: 297 RREMEKAAFTDPLTGGMNEAAFRMK---YRSLAEKAPACTHAVIFLNIKNFKMMNENFGM 353

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             G+D+L+ + ++I E ++  +  AR   + F  I + EN    I      M +++    
Sbjct: 354 KTGNDILIHIYKKIMENIREGETDARAGADHFF-ICMRENREDVIQSRVTRMTEAMNAFN 412

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                E  ++A  G        +  + +   A +A             +  ++    +  
Sbjct: 413 EHAAIEYHLSAQWGVCVVDEPDLNIAVIQDRARIACRQYDGNSACCFYTPAMTQKIREEH 472

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +      +VEN +  +   P +RL D    G E L++W HP+ G I  SEF+ + E+  
Sbjct: 473 ELNALFDGSVENHDFQIYMQPKVRLSDGRPGGAEVLVRWFHPQKGRILPSEFIPLFEKSD 532

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  ++L++ E +   +           + + +N++     +        AL  K     
Sbjct: 533 NICRLDLYVFEEMCIFLYRCMQDNREL-LPVSVNLSRVHFKNLNFLSEFVALKEKYRIPD 591

Query: 826 SRIKLSFSESVVMGNP--ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             I++  +ES++      E  +  + ++ + G   +LDDFG   S L+ L     DT+K 
Sbjct: 592 GIIEIELTESILFDEQQRELVKETIVKMHEQGFLCSLDDFGVGFSSLALLKDFDIDTIKL 651

Query: 884 NGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           +          K  +I+   I +AK++   ++A+ I  +  I  L    C+ +Q  + + 
Sbjct: 652 DREFFMDITNSKARSIITGFIRLAKDMGIHVVAEGIETQEQIDFLKEADCELVQGYYYSK 711

Query: 943 PLGFNSILKL 952
           PL      + 
Sbjct: 712 PLTVVKFEEW 721


>gi|195953194|ref|YP_002121484.1| diguanylate cyclase/phosphodiesterase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932806|gb|ACG57506.1| diguanylate cyclase/phosphodiesterase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 793

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 204/457 (44%), Gaps = 35/457 (7%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-TDDNLRPTVMVIDID 574
             DI      LE I   A +D LTG  N+  F   L   +  SA        + ++IDID
Sbjct: 334 LTDIDSLHIHLEEI---ATKDPLTGFYNKDMFDMFLENEVKKSAVRMLPNAFSYILIDID 390

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND  G + GD V+  L+  +    + PDILAR+ G+ FGII              
Sbjct: 391 NFKYINDAYGYSAGDMVIKELSNILKSSTRAPDILARIGGDEFGIIAPDTK-VQSAKVIM 449

Query: 635 IAMRKSI-AMPINLLEREITVTASIGFAS-------------WTSSKITS---------- 670
             + + + + PI L +++I ++ S+G ++             ++    T           
Sbjct: 450 ERINERLSSQPIILEDKKIYISLSVGISTCFEKEGQSLLISGFSDDDNTQNKRLSKAFCS 509

Query: 671 -SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
             E+   AE A+  AK  G + V          + +   E +  A+  + +   + PI  
Sbjct: 510 KEEVKMLAEEALRKAKKSGKSSVVIASFEDNDIEYISKYELINNAINGNLIKPAFQPIFD 569

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L D++I+G EAL + +      I   +F+  AE+L +I  I+L M+ +    I +   + 
Sbjct: 570 LEDKKIIGFEALCRIEINDN-IIYPDQFIEEAEDLGLINKIDLLMIRKACERISALNKKI 628

Query: 790 NMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
           N    + + +NI++K   D    + +  +  +     +++ +  +E   + N E+   + 
Sbjct: 629 NSQDGLRLFVNISAKAFKDRRFFQNVVDIAKEYGMQ-NKLYIEITERESLSNLEKFEEIE 687

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             L+  GI   +DDFG+  S   YL +I  + +K +G+ +      E+ +AI+  I  +A
Sbjct: 688 EFLKYYGIHFVIDDFGSGYSSFLYLKFIKTEILKIDGAFVKNIVKNERDVAIVSGINTIA 747

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           K++ T  +A+ I  E  + EL ++G +Y Q  ++  P
Sbjct: 748 KHLNTKTLAEFIENEETLDELVKIGVNYGQGYYLGKP 784


>gi|163760501|ref|ZP_02167583.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
 gi|162282452|gb|EDQ32741.1| diguanylate cyclase/phosphodiesterase [Hoeflea phototrophica
           DFL-43]
          Length = 648

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 199/449 (44%), Gaps = 9/449 (2%)

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           + +       K+    +   A  D LTG+ NR+     L  +      DD     ++ ID
Sbjct: 186 LAVVKQQESLKERDRKMSEMARTDALTGLLNRRGVDQELAALPSSLGLDDRAW--LLQID 243

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +DK+K +NDVLG  VGD++L  L RR+        I+ R  G+ F + L ++    ++  
Sbjct: 244 LDKFKPVNDVLGHQVGDELLARLARRLRYAAGPDAIVGRTGGDEFLVCLKTQAPEKQVFA 303

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNH 691
               +R S+  PI +   +  V ASIG   W+ S      E ++ A++A+  AK  G N 
Sbjct: 304 RIERLRLSLLRPIRIDGNDCCVGASIGAVGWSRSEGWDVIEAVRYADVALQKAKEGGRNK 363

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F  S          I ED+ L +  +E    + PI+    E++VG EAL +W HP+ 
Sbjct: 364 VVMFEPSMQDRVLHDAKIAEDVTLGLSRNEFTAYFQPIVDAGSEQVVGFEALARWTHPER 423

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   +FM  +E+  ++ AI+  +L          +       + + IN++   L + E
Sbjct: 424 GLLLPGDFMQASEKAGLVPAIDQVILRDAIAFAKQLKAA-GREDLQVSINLSGIRLKEQE 482

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCS 868
             +     ++     PS+ +L   ES+++ +  + +  +L R   +G  + LDDFGT  +
Sbjct: 483 TVDEFVWQLAANDLQPSQFRLELLESILLDDRSDNATDILKRFHHLGFKIDLDDFGTGHA 542

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            ++ L   P D +K + SL++G         +  ++  +       ++A+ I  + ++  
Sbjct: 543 AIASLHRYPIDRIKIDRSLISGIGSDPQLAILTEAVAALGYRFGVEVLAEGIERQDELDI 602

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +M    IQ    +     +  L  L  
Sbjct: 603 VRKMKVGAIQGFLFSKAKPAHECLDQLAA 631


>gi|293401427|ref|ZP_06645570.1| putative GGDEF domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305065|gb|EFE46311.1| putative GGDEF domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 727

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 89/437 (20%), Positives = 171/437 (39%), Gaps = 10/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   AF D + GI N   F   +   +                DID +K  ND  
Sbjct: 277 RTKQHLERLAFADPVLGISNFVKFSIDVEEQIIQRKDAFQ-PFAFWYGDIDNFKIYNDTF 335

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +   +   ++  D   R S + F  I        ++ ++   + K++  
Sbjct: 336 GYEAGDALLKIMCNCLLANMQTHDFFCRESADHFTGI-RFFQEPNQLIEWHEHIMKAVIA 394

Query: 644 PINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSS 699
             +       ++ +IGF         ++ ++M   A++A    K          S  +  
Sbjct: 395 KEHCNTHSFPISFAIGFYCVTKPEDVLSVNKMYNRAKMAQQSIKANREIRQAFYSDTIRQ 454

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  I+  + LA++N E  +   P      +  I+G E L++W       I  ++F+
Sbjct: 455 NILHINEIESQMQLALKNGEFKMYIQPKTDTHHNHRIMGGEVLVRWQKSDGTIIPPNDFI 514

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I E    I  ++ +M     + +  +  + +   I + +N++  D+   +      ++ 
Sbjct: 515 PIFERNGFIVLLDRYMFVSACKWLYDY-FENHTHRIHLAVNVSRLDIFQEDFISYYVSIK 573

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       I+L F+ES+ + +       +  LR  G   ++DDFG   S L+ L  +P 
Sbjct: 574 EQYELCDDVIELEFTESLAIEDHALLSAKISELRTHGFLCSIDDFGAGYSSLNTLKELPI 633

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +          EK   I+  II +AK +   ++A+ I     +  L + GCD IQ
Sbjct: 634 QVIKLDILFFRKGASIEKARIIVSHIIHLAKQLHIAVVAEGIEEPDQVYFLEKCGCDIIQ 693

Query: 937 DSHVASPLGFNSILKLL 953
               A P+  N   KLL
Sbjct: 694 GYVFAKPMPANDFKKLL 710


>gi|289671670|ref|ZP_06492560.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 554

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 194/399 (48%), Gaps = 10/399 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A QD+LTG+PNR+ F   L   +  +         V V+D+D +K +ND+ 
Sbjct: 162 QLSNENLLLANQDSLTGLPNRRQFFQTLDAAMIEAVA-QRSELAVGVLDLDGFKPVNDLY 220

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ +  R+         ++RL G+ F +++  + +S  +  F   +   +  
Sbjct: 221 GHRIGDRLLMLVAERLTSASSDKVHVSRLGGDEFALVIKGDMDSDALLAFGKHLCDLMHE 280

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L +  I + A++G A++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 281 SFELSDMPIQIGATLGLATYPATADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQL 340

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            V    ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G++S + F+ IA
Sbjct: 341 HVDGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGSVSPAHFIPIA 400

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L R     +SW       P+ +  N+++ D    E    +  +I  +
Sbjct: 401 ERIGMINKLTAPLLTRSLHMALSWPA-----PVRLSFNLSAHDCASLESVSRIVEIIKNS 455

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
            +  SR+ L  +E+ VM +  + +  + + RK+G  ++LDDFGT  S LS L  +    +
Sbjct: 456 GFDASRLDLEITETAVMQDIAQVQQAITQFRKLGCGISLDDFGTGFSSLSQLHALALTKL 515

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDI 918
           K + S +TG  +      I++S++ ++ ++    + + +
Sbjct: 516 KIDRSFVTGVHNNPASYKIVKSLVALSLDMSLGCVIEGV 554


>gi|319936609|ref|ZP_08011022.1| hypothetical protein HMPREF9488_01855 [Coprobacillus sp. 29_1]
 gi|319808166|gb|EFW04731.1| hypothetical protein HMPREF9488_01855 [Coprobacillus sp. 29_1]
          Length = 735

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 181/435 (41%), Gaps = 13/435 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           QKK+   +   AF+D LT   N   F++         +     +  ++  DI  +K  N+
Sbjct: 301 QKKNKLQLTKLAFEDALTQHYNFNKFIELCK------SNSHLDQYVLINCDIKGFKWFNE 354

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G  + +++L+++ + I       ++  R   + F I+    ++  K+ +    +   I
Sbjct: 355 IYGEDIANNLLMTIMKCIDNKCHMDELCCRQKDDHFAILF-KRDSPDKLRERLFNLADQI 413

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
               N L+         G        I      +  +      K    + V  ++     
Sbjct: 414 RYEFNKLQATSQFYFHFGVYEIIDKDIDIKAAFQKTQYIKNDFKQLSQDDVILYQEDVFQ 473

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  I++D   A+EN +  +   P + +    +   EAL++W + + G IS   F+ 
Sbjct: 474 KDLHDQQIEKDFLNALENQDFKVYIQPKVDVKTGHVFTGEALVRWQNAEHGLISPGVFIP 533

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I E+  M++++++++ ++I R +  WR       I I +N++   L +    +    L+ 
Sbjct: 534 ILEKNGMLESLDVYVFQQILRTLEYWR-HTYHQDIGISVNVSRTYLFNEGFIDQFIQLVL 592

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                PS+I++  +E+  + +      +L +LRK  I + LDDFG+  S L+ L   P D
Sbjct: 593 THDIHPSQIEVEITETTALNHKSELIDILNKLRKHEIRIALDDFGSGYSSLNMLKDFPID 652

Query: 880 TVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            VK +      ++    +   I+  +I +   +   ++A+ +  +     L +  CDYIQ
Sbjct: 653 VVKIDQEFFKTTSSTYLRSHIIIEQVIELCHKLNIVVVAEGVETQEQKDFLVKHHCDYIQ 712

Query: 937 DSHVASPLGFNSILK 951
             +   P+  +   K
Sbjct: 713 GYYYYKPMSIDQYEK 727


>gi|163739493|ref|ZP_02146903.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107]
 gi|161387246|gb|EDQ11605.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis BS107]
          Length = 514

 Score =  338 bits (866), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 202/437 (46%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D+LTG+  R  F + + + +  SA D  LR  V ++++D +K++    G    D ++  
Sbjct: 72  RDSLTGMMMRDGFKE-IVSEVYDSAADTGLRSAVFIVELDDFKELAQRHGQETADQLVNR 130

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLEREI 652
              RI  +L+  D +AR+  +RF I L      +       A  ++ SI  PI +    +
Sbjct: 131 CGDRIISILRPQDYVARIGDSRFAICLTPVLQMDLELAIQMAGRLQASIEEPIAVDGASL 190

Query: 653 TVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            V+ SIGF   + +   + ++ +  A  A+  A++ G + + +F     +  +    + +
Sbjct: 191 YVSCSIGFCLHSRTPRPSGNDWMSAACTALLDAQNNGPSGIRAFSPEMDQRSKARGDMLD 250

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+EN ++   + P I      + G EAL +W HP  G I+   F+   E   +++ 
Sbjct: 251 EVTEALENGQIQAWFQPQICTDTGRVSGFEALARWAHPVRGMIAPMSFLPTLESAGLMER 310

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  ML      + +W       P  + +N A+ +L +  L E +   + +   +P R+ 
Sbjct: 311 LSEIMLYNALTALKAWDAAGLNVP-SVGVNFATDELRNANLVERITWELERFGLTPDRLS 369

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L ++G  + LDDFGT  + ++ +       +K + S +
Sbjct: 370 IEILETVMTDRPDDMIVRNIAALGELGCGIDLDDFGTGHASIAAVQRFRVSRIKIDRSFV 429

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ ++   +A+ +    +   L+++GCD++Q   +  P+ F
Sbjct: 430 MKADRDPEQQKLIAAILTMAERLDLATLAEGVETVGEHALLSQLGCDHVQGFGIGRPMPF 489

Query: 947 NSILKLLKERFPLVKNT 963
           +  L  +      ++  
Sbjct: 490 DQTLDWIAAHEAKLQEA 506


>gi|325922627|ref|ZP_08184377.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas
           gardneri ATCC 19865]
 gi|325546890|gb|EGD17994.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas
           gardneri ATCC 19865]
          Length = 618

 Score =  338 bits (866), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 199/475 (41%), Gaps = 18/475 (3%)

Query: 489 DNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
           D      +  I   P    +   +  +    D+   +          ++D  TG+PNR  
Sbjct: 130 DGHSIGTLCVIGTSPRPGLDAATIAQLEGLRDLAVLRVENLRSTT--YRDGPTGLPNRSR 187

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           F + L   L  S  +     T + +DI   D ++ +   LG    D  +    RR+   L
Sbjct: 188 FGEDLDAWL--SQREGAPATTAVAVDICGNDYFRDMVKALGWDYADGYVALAQRRLAAYL 245

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                L RL    FG +  +E    +++   I + K+ A P+       T  ASIG  + 
Sbjct: 246 PASTALYRLDPTTFGFLAQAET--QRLSTLCIKVSKAFAEPLEHQGIPHTAVASIGAVAL 303

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELY 721
            +S   +   +++   A+  ++ R        R      R+   ++          S+L 
Sbjct: 304 QTSYGAADT-IRSLTTAVDVSRERSLPWSMYERKHDVAQRNTFRLLAALPAALDSASQLR 362

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P + L D   V +EAL++W HP  G +  S+F+ +AE+  +I  I  ++++     
Sbjct: 363 LHYQPRVDLHDHRCVAVEALLRWQHPMIGPVMPSDFVPMAEKTALINRITAWVIDNGIAQ 422

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
              W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES ++ +P
Sbjct: 423 AARWQQQGLD--FNLALNVSAADLDRPGFAGLLKRGLERHKLDPRRLEIEFTESAMIRHP 480

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAIL 899
           E     L  +  +G+ + +DDFGT  S  SYL  +P  ++K + S +    +      ++
Sbjct: 481 EHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFVRSLPDSRTDRTLV 540

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 541 PAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLQ 595


>gi|213622015|ref|ZP_03374798.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 688

 Score =  338 bits (866), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 189/443 (42%), Gaps = 15/443 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 231 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 286 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 346 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 405 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 465 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 583 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVEDEAQRAWLEQAGVNVAQ 641

Query: 937 DSHVASPLGFNSI-LKLLKERFP 958
               A P+  +    + L    P
Sbjct: 642 GFLFARPVPADIFEERYLSHENP 664


>gi|205354769|ref|YP_002228570.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858853|ref|YP_002245504.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205274550|emb|CAR39598.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710656|emb|CAR35014.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 639

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 187/440 (42%), Gaps = 14/440 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 202 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVIARQQTT-----ALIIVTCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 257 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 317 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 376 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 436 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L + G +  Q
Sbjct: 554 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVNVAQ 612

Query: 937 DSHVASPLGFNSILKLLKER 956
               A P+  +   +     
Sbjct: 613 GFLFARPVPADIFEERYLSH 632


>gi|196248124|ref|ZP_03146826.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. G11MC16]
 gi|196212908|gb|EDY07665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacillus sp. G11MC16]
          Length = 797

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/468 (22%), Positives = 206/468 (44%), Gaps = 14/468 (2%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDG 404
               +  +   ++   R   DI QP      +  ++      ++ + A       +    
Sbjct: 342 AFAAVSLMEGAVSTQDRPTLDIPQPPEGITTLAQLMSTSSRDMERLHAR------LQMSE 395

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R       + DIV+  D+     +  P    +LG     +       L Y+H +D    
Sbjct: 396 QRYKSLFEHNTDIVYSTDLHGHFTSVNPAFERVLGYRKEEILYTNS--LKYVHSSDIPRV 453

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                  +         E  +     +  +  ++  P+   +G  +   GI ++ITEQKK
Sbjct: 454 TRYFYRALRGNVQTYDLE--IPTKSGERLFFQMKNIPII-VDGKKVGIYGIGHNITEQKK 510

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E I   A+ D  T +PNR  +++  +  L  +      +  + +ID+D++K IND +G
Sbjct: 511 AEEKISYLAYYDPDTNLPNRTKWMELFSKQLKRAKQKQQ-KVVIALIDLDRFKWINDSVG 569

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GDD+L  L  R+  +L     L R  G++F ++   + ++    + A+ + + ++ P
Sbjct: 570 HYAGDDILRQLVERMKRVLPAGAQLGRFHGDKFCLLFPLKTSAGAATETALQLVREVSKP 629

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
               ++E  +TASIG A +         +L++A++AM  AK  GGN VE +         
Sbjct: 630 TVYSQKEFFITASIGLAVFPDDGADEHTLLRHADMAMNSAKKSGGNRVERYCAQMNEEAV 689

Query: 705 VMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             ++ D  L  AVE +EL+L Y PI+ +    ++  EALI+W +P+ G +   EF+ +AE
Sbjct: 690 HRLEMDSYLRKAVEKNELFLCYQPIVNVRTGAVIATEALIRWRNPQLGLVRPDEFIPLAE 749

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           E   I  I  ++L+   +    W++      + I +N+++     ++L
Sbjct: 750 ETGWIHEIGRWVLQTACQQTKRWQEMTGNDKLAIFVNVSAVQFQHDDL 797


>gi|167748989|ref|ZP_02421116.1| hypothetical protein ANACAC_03770 [Anaerostipes caccae DSM 14662]
 gi|167651611|gb|EDR95740.1| hypothetical protein ANACAC_03770 [Anaerostipes caccae DSM 14662]
          Length = 634

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/440 (21%), Positives = 181/440 (41%), Gaps = 15/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++ +    +  A+QD LT   N + F      +L    ++         +D   +K  N
Sbjct: 198 ERRNTNLESI--AYQDTLTKASNLEKFRLDSKHLLA---SNPLCDYAFFHLDFQNFKYCN 252

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA---DFAIAM 637
           D+ G   GD +L      + E +   +  AR+SG++F I+   E     IA        +
Sbjct: 253 DIFGYDFGDLLLKQYAVFLSEDMTEGETFARISGDKFVILRKYEYREELIARQKAVDSRI 312

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           R       +     +T+   I       S I    +L  A  A    K +   H   +  
Sbjct: 313 RAFAMD--SKEHYSLTIYGGICCVKDVPSSIEIDSILDRANFAQKTVKGQEERHYAFYTD 370

Query: 698 SSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           S        + I+     A++N E  + Y P + L  +     EAL++W       IS +
Sbjct: 371 SIREQMVEEINIQSRFSDALKNKEFIVYYQPKVNLSADSFDSAEALVRWQDKSGRVISPA 430

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E+  +I  ++ ++   +   ++  R ++ +P I + +N++     + +      
Sbjct: 431 SFIPVLEKNFLISTLDQYVFREVC-ILMQNRLKSGLPVIPVSVNVSKIQFYNPDFVRIYS 489

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           ++  +       +++ F+ES    N E    ++ +L + G    +DDFG   S LS L  
Sbjct: 490 SIKEEYQIPDGLLEIEFTESACFENTEYFLEIIAKLHEHGFLCAMDDFGKGYSSLSMLKD 549

Query: 876 IPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           IP D +K +      +  ++K + ++R II M K ++   +A+ I  +  +  L  +GCD
Sbjct: 550 IPIDVLKLDSLFFVSSPDSKKDLTVIRGIISMVKELQIRTVAEGIEHKEQVDFLKNIGCD 609

Query: 934 YIQDSHVASPLGFNSILKLL 953
            IQ  +   P+  +    LL
Sbjct: 610 TIQGYYFYKPMPEDDFTALL 629


>gi|217077187|ref|YP_002334903.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Thermosipho africanus TCF52B]
 gi|217037040|gb|ACJ75562.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Thermosipho africanus TCF52B]
          Length = 818

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 211/546 (38%), Gaps = 29/546 (5%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
               D +         V          G     +         Y+    +     IL   
Sbjct: 299 NNIPDPLALVTPSGKIVDCNSAFTKTFGYKK--LENIENIVPDYLKEESKILILQIL--- 353

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
              ++G + YE   ++   +  ++ I        N   +  I   +DI+++KK  + I  
Sbjct: 354 ---KKGHVSYETVRKSKSGKNIFVRIYASKFEIENQTFIYII--YSDISKEKKLSQQISN 408

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
              +D LT   N+   + RL  +            +++ IDI  +++IN + G   GD V
Sbjct: 409 LIEKDPLTKTFNKVYIIKRLKNL------KPLFYHSLIFIDIKDFQRINSLKGNVFGDKV 462

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFAIAMRKSIAMPINLLE 649
           L  +  ++ E      I++R   + F I+      +     +     +        N+  
Sbjct: 463 LKIVANKLKECT--NYIISRAHADEFWILAEELDIDVKKAYSKNKELILHIDNCLKNIKV 520

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
            + ++   IG   + +      E+++   L++  +K        S  +       +  + 
Sbjct: 521 DDTSLKFHIGTYIFKND-ENIDEVIRKTSLSLSRSKDEDKIITYSKEIEDEIRKELEKEI 579

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+E  E    + PI    + EIVG EALI+W       I   EF+   E+  +I+ 
Sbjct: 580 QIKKAIEKGEFIPFFQPI-ATHNMEIVGAEALIRWV-KDGKVIPPFEFLDFLEKTGLIEQ 637

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
            +  + E + +              F+ +NI+   L +    +    ++ K     S+I 
Sbjct: 638 ASKQIFENVCKL-----LSKTKKLKFVDVNISPIQLKNTNFSKDYLKILEKYNIQSSQIT 692

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E++ +   +  R  L  L+  G  L LDDFGT  S L+YL  IPFD +K +   ++
Sbjct: 693 IEITENLFIDYNDIVRENLNLLKSEGFKLCLDDFGTGYSSLNYLRNIPFDIIKIDREFIS 752

Query: 890 GSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              +++   +L++I  +A++ +   I + +  E  ++ LT +G    Q  +   P+  + 
Sbjct: 753 NIDDEKNLNLLKAIYSIAESFKMGAIPEGVENEKQLEILTVIGFRLFQGYYFGKPMPESE 812

Query: 949 ILKLLK 954
            L +L 
Sbjct: 813 FLSILS 818


>gi|289668910|ref|ZP_06489985.1| hypothetical protein XcampmN_10544 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 591

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 200/480 (41%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  +   P    +   +  +    D+   +  +E +  N ++D  TG+P
Sbjct: 103 LKLRDGHTIGTLCVVGTSPREGLDAAAITQLEGLRDLAVLR--VENLRSNTYRDGPTGLP 160

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + + T L  S  D     T + ID+   D  +++   LG    D  +    RR+
Sbjct: 161 NRSRFSEDMETWL--SQRDTAPATTAVAIDVCGSDYLREMVKALGWEYVDGYIALAQRRL 218

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +L RL  +   +  +++    ++A     + K+   P+       T  ASIG
Sbjct: 219 AAYLPGGTLLYRL--DPTTLGFLAQAEGQRLATICTKVSKAFTEPLEHQGIPHTAVASIG 276

Query: 660 FASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             +      +  T   +    +++            E     + RS   ++         
Sbjct: 277 AVALQSTYGAADTIRSLTTAVDISRDRCMPWS--MYERKHDVAQRSTFRLLAALPAALDS 334

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +L L Y P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 335 AGQLRLHYQPRVDLHDHRCVGVEALLRWHHPMIGPVIPSDFIPMAEKTALINRITAWVID 394

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES 
Sbjct: 395 NGIAQAARWQQQGLD--FNLALNVSAVDLDRPGFAGLLRRGLDRYKLDPRRLEIEFTESA 452

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +PE     L  +  +G+ + +DDFGT  S  SYL  +P   +K + S +    +   
Sbjct: 453 MIRHPEHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKVDQSFIRSLPDSRT 512

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 513 DRTLVPTMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLE 572


>gi|197336819|ref|YP_002158704.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
 gi|197314071|gb|ACH63520.1| sensory box/ggdef family protein [Vibrio fischeri MJ11]
          Length = 630

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 198/471 (42%), Gaps = 15/471 (3%)

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            + AD  +    ++      +       I ++N+I  ++ + + +  +   D  TG  N 
Sbjct: 155 YQHADLLYRHKELQAEVAKTTQHLNEINIKLSNEIDCRRAAEQKVEYHKNHDVNTGFLNP 214

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            +    + +++      +  +  ++ +     +KI    G    D +L+    ++ ++  
Sbjct: 215 IAIHRHVDSLIK-----NETKFVLLHVHFANSRKIQQEYGYQAFDSLLIEYRSKLTKITD 269

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
                 RL  +   I+LI + +  K+      + +         E+ + + + +G A  +
Sbjct: 270 TSVT-GRLGSSD--ILLIVQTDKEKLPQLCQHLSEIGQANYTANEQSLHLQSYVG-AVHS 325

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
              I+ S++L+ A   +   +  G     +     +        I+  L  AV N +L+L
Sbjct: 326 KEGISRSDLLQFAYDTVVKCQSLGKTFTIADVSLPTQSTLSEHKIERYLLEAVRNHDLFL 385

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +  ++++ +G EAL++W+HP  G I++   + +AE   +I  +  F L    +  
Sbjct: 386 NYQPKVCPVNKKWIGCEALLRWNHPHLGAIANDVLIQLAERNGLIYELGNFALRNAIQQA 445

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W    + P   + +NI++  L D      ++ L++        ++L  +ES ++ +  
Sbjct: 446 SEW--ILHSPNFVMAVNISAVQLKDPHFVTHIKQLLNLYQLPARNLELEVTESGLISDEP 503

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            +   L +L  +GIS+ LDDFGT  +   YL   PF ++K + S +           I+ 
Sbjct: 504 LAIATLSQLNNMGISIALDDFGTGYASFQYLKKYPFSSLKIDKSFIANIEKNADDQNIVC 563

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++I +AK ++  ++ + +  +     + + G D IQ    + P+      +
Sbjct: 564 AMINIAKKLQLKVVVEGVENQNQEAFVVKEGIDLIQGYLYSKPISATDFEE 614


>gi|225848060|ref|YP_002728223.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644571|gb|ACN99621.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 638

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 195/429 (45%), Gaps = 21/429 (4%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               +  D+LTG+ NR    +            +     V+V D+D +KKIND  G  VG
Sbjct: 222 YKKRSLIDSLTGLYNRNYLEE--------IENKNLKDFVVIVADVDFFKKINDTYGHLVG 273

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI--ADFAIAMRKSIAM-PI 645
           D+VL ++   I + ++  +I+ R  G  F IIL  E +   +   + A  +RK++    I
Sbjct: 274 DNVLKTVAETIKKNVRENNIVIRYGGEEFLIILNKERSVDNLNYINVAERIRKAVENLKI 333

Query: 646 NLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            + E + +  T S+G    T    T  E +K A++A+Y AK +G N +E +   +  S++
Sbjct: 334 KINENDYLKTTLSVGIFLDTDKIKTLQEAIKKADVALYKAKTKGRNRIEIYDEENQSSEK 393

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +    +  A+E+  L+ +Y PI+ L D  +   EAL++    +   I   +F+ + E  
Sbjct: 394 ALKVSQIKEAIEDKRLFCLYQPIVSLKDGTVSHYEALVRIKDKEGNTIPPYQFLNVIENT 453

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   +   ++E   + +  +      P I + IN+   D+L+    + +  +       
Sbjct: 454 FLYTKLTKEVIEYNLKILKDY------PDIKVSINLKPSDILNRSTIDILLDIAKDKDVV 507

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             R+ L   E+      E    ++  L+K G  + LDDFG+  S   YL  +  D +K +
Sbjct: 508 -KRLMLEIVETEDALAYEEIVKIISSLKKAGYIICLDDFGSGYSNFVYLLRLNIDYLKID 566

Query: 885 GSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            +L+   T  +++   ++ I    K ++   IA+ +  E  +  + ++G DY Q  + + 
Sbjct: 567 ANLIKNITTDQVSFEVVKMITGFCKKMKIKTIAEYVENEDILNIIKQIGIDYGQGYYFSK 626

Query: 943 PLGFNSILK 951
           P     ++K
Sbjct: 627 PKQIEELIK 635


>gi|163740286|ref|ZP_02147680.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
 gi|161386144|gb|EDQ10519.1| diguanylate cyclase, putative [Phaeobacter gallaeciensis 2.10]
          Length = 514

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 202/437 (46%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D+LTG+  R  F + + + +  SA D  LR  V ++++D +K++    G    D ++  
Sbjct: 72  RDSLTGMMMRDGFKE-IVSEVYDSAADTGLRSAVFIVELDDFKELAQRHGQETADQLVNR 130

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLEREI 652
              RI  +L+  D +AR+  +RF I L      +       A  ++ SI  PI +    +
Sbjct: 131 CGDRIISILRPQDYVARIGDSRFAICLTPVLQMDLELAIQMAGRLQASIEEPIAVDGASL 190

Query: 653 TVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            V+ SIGF   + +   + ++ +  A  A+  A++ G + + +F     +  +    + +
Sbjct: 191 YVSCSIGFCLHSRTPRPSGNDWMSAACTALLDAQNNGPSGIRAFSPEMDQRSKARGDMLD 250

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+EN ++   + P I      + G EAL +W HP  G I+   F+   E   +++ 
Sbjct: 251 EVTEALENGQIQAWFQPQICTDTGRVSGFEALARWAHPVRGMIAPMSFLPTLESAGLMER 310

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  ML      + +W       P  + +N A+ +L +  L E +   + +   +P R+ 
Sbjct: 311 LSEIMLYNALTALKAWDAAGLNVP-SVGVNFATDELRNANLVERITWELERFGLTPDRLS 369

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L ++G  + LDDFGT  + ++ +       +K + S +
Sbjct: 370 IEILETVMTDRPDDMIVRNIAALGELGCGIDLDDFGTGHASIAAVQRFRVSRIKIDRSFV 429

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ ++   +A+ +    +   L+++GCD++Q   +  P+ F
Sbjct: 430 MKADRDPEQQKLIAAILTMAERLDLATLAEGVETVGEHALLSQLGCDHVQGFGIGRPMPF 489

Query: 947 NSILKLLKERFPLVKNT 963
           +  L  +      ++  
Sbjct: 490 DQTLDWIAAHEAKLQEA 506


>gi|289665260|ref|ZP_06486841.1| hypothetical protein XcampvN_19860 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 614

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 200/480 (41%), Gaps = 20/480 (4%)

Query: 485 VRAADNQFHWMIIRI--RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
           ++  D      +  +   P    +   +  +    D+   +  +E +  N ++D  TG+P
Sbjct: 126 LKLRDGHTIGTLCVVGTSPREGLDAAAITQLEGLRDLAVLR--VENLRSNTYRDGPTGLP 183

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRI 599
           NR  F + + T L  S  D     T + ID+   D  +++   LG    D  +    RR+
Sbjct: 184 NRSRFSEDMETWL--SQRDTAPATTAVAIDVCGSDYLREMVKALGWEYVDGYIALAQRRL 241

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L    +L RL  +   +  +++    ++A     + K+   P+       T  ASIG
Sbjct: 242 AAYLPGGTLLYRL--DPTTLGFLAQAEGQRLATICTKVSKAFTEPLEHQGIPHTAVASIG 299

Query: 660 FASWT---SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
             +      +  T   +    +++            E     + RS   ++         
Sbjct: 300 AVALQSTYGAADTIRSLTTAVDISRDRCMPWS--MYERKHDVAQRSTFRLLAALPAALDS 357

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +L L Y P + L D   VG+EAL++W HP  G +  S+F+ +AE+  +I  I  ++++
Sbjct: 358 AGQLRLHYQPRVDLHDHRCVGVEALLRWHHPMIGPVIPSDFIPMAEKTALINRITAWVID 417

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                   W+ Q       + +N+++ DL        ++  + +    P R+++ F+ES 
Sbjct: 418 NGIAQAARWQQQGLD--FNLALNVSAVDLDRPGFAGLLRRGLDRYKLDPRRLEIEFTESA 475

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
           ++ +PE     L  +  +G+ + +DDFGT  S  SYL  +P   +K + S +    +   
Sbjct: 476 MIRHPEHLAEQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASALKVDQSFIRSLPDSRT 535

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I +  ++   ++A+ I       +L   GCD  Q   +A P+   ++   L+
Sbjct: 536 DRTLVPTMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLE 595


>gi|294676115|ref|YP_003576730.1| diguanylate cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294474935|gb|ADE84323.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Rhodobacter capsulatus SB 1003]
          Length = 558

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 201/546 (36%), Gaps = 19/546 (3%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D V   D            A + G    ++ G +   L  +    +      L       
Sbjct: 13  DGVVAIDAQGRIDYLNAAAAALFGYVPEALLGQL---LEVLIPEPQAAVHARLRRAFAAG 69

Query: 476 RGRLQY----EFRVRAADNQFHWMIIRIRPMSNSN-GDILRYIGIANDITEQKKSLEGIL 530
           +  L        R R  D     +   +    +++ G +  ++        +     G  
Sbjct: 70  KAPLAIGRMRAVRGRRRDGSEIALH--VMLKRDADTGRVFAFVHPLE----RPSRGGGGG 123

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
               +D LTG+P+R++    L  +L  +      +  ++  +ID +      +  A  D 
Sbjct: 124 RETGEDPLTGLPDRRALRRDLDAMLTGADPTQ-PQVCLLFAEIDPFAGNRAAVDPAHHDA 182

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ +   R+  L      L R   + F  +++ E  +         +  ++  P  +  +
Sbjct: 183 LMRACADRLERLETEAMQLYRSGEDGFVFLMVQETGAAMPGPQLARVMAALRAPFEIGGQ 242

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKE 709
            + +   IG A        + E++ NA LA+  +K            + S    R  +  
Sbjct: 243 PLHLEFGIGHACAPEHGAHAGELIANAALALAASKAAFNRPTGYDESLRSRVEHRHRLLR 302

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  AVE  E  L Y P + L+  EIV LEAL++W HP+WG +    FM +     +  A
Sbjct: 303 DLRAAVERREFELFYQPQVDLISGEIVALEALLRWHHPEWGLLLPGAFMEVLSASELSLA 362

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L      +  W       P+ + +N+  +    + L   +   ++++   P  + 
Sbjct: 363 VGDWVLREACTQVAIWNRH-RKTPLTVAVNVFPRQFDRDILPAAITRALAESGLPPRLLD 421

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E++V+     S  +   L   G++L LDDFGT  + L+ L   P   +K + S + 
Sbjct: 422 IEITENIVIDPATHSTEVFEALTATGVALVLDDFGTGYASLTCLARHPVHKLKIDKSFVA 481

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G        AIL+S+  +A  +    + + +        +   G    Q      P+   
Sbjct: 482 GLDTGPGYRAILKSLQALAGTLGLGTVVEGVETAETAALMRDFGFAVGQGFFWNRPMARE 541

Query: 948 SILKLL 953
              + L
Sbjct: 542 DCARAL 547


>gi|153811097|ref|ZP_01963765.1| hypothetical protein RUMOBE_01488 [Ruminococcus obeum ATCC 29174]
 gi|149832985|gb|EDM88068.1| hypothetical protein RUMOBE_01488 [Ruminococcus obeum ATCC 29174]
          Length = 578

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 171/421 (40%), Gaps = 16/421 (3%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR-RI 599
           + NR  FL++    LD   +       ++ IDI+++K  N+  G   GD +L ++++  +
Sbjct: 7   LYNRSEFLEKAQEFLDACESSG---WCIISIDIERFKLFNNWYGQEAGDILLQNISQYLL 63

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
                   +     G+ F + +  +            + K+I   I +  +       IG
Sbjct: 64  RVQQMKGYLAGYFGGDHFFMYIPDD------EQLINLIYKTIRSYIGIHSQNEGFLPIIG 117

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVEN 717
               T     ++ M  NA+LA    K      +  F             +  D+ + +EN
Sbjct: 118 IYPITEKHPDTATMCNNAQLAASEIKGNFNKRICYFTNEIIDQLEKEQQMLHDVKVGLEN 177

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E      P    +   IV +EAL +W  P  G +S  EF+   E   MI A++ ++ + 
Sbjct: 178 KEFTFYLQPKCNSITGAIVSMEALSRWISPSRGFVSPGEFIPFLENNGMITALDTYIWDA 237

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           + + +  W+       + I IN++  D+    + E +Q LI K   +P  + +  +E+  
Sbjct: 238 VCQTLAYWKKDHLYV-VPISINVSVADIETINVPEFLQDLIIKYGLTPEMLLVEITETAF 296

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI- 896
             N    R  + +L + G  + +DDFG+  S L+ L     D +K +   +  + E R  
Sbjct: 297 SENNIIVRKTIDQLHQYGFCILMDDFGSGYSSLNMLKDANVDILKLDMKFIEMNPENRQK 356

Query: 897 --AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+ S++ MA  +E  IIA+ +     I+ L  M C Y Q      P+       LL 
Sbjct: 357 GIQIINSVVNMAHKLELPIIAEGVETPEQIEMLHSMNCVYAQGYFFFKPMPVADAEDLLS 416

Query: 955 E 955
            
Sbjct: 417 N 417


>gi|218459683|ref|ZP_03499774.1| putative sensory box/GGDEF family protein (nitrogen fixation
           positive activator protein-like) [Rhizobium etli Kim 5]
          Length = 361

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 91/359 (25%), Positives = 179/359 (49%), Gaps = 9/359 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR+     +   +  +         ++ +D+D +K++ND  G   GD ++ ++   +
Sbjct: 2   GLSNREGLGLAVDRFVAEA-RQSRRNVLLLYLDLDGFKEVNDSYGHGTGDQLIRAVAAGL 60

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             L+    +LAR+ G+ F I  +S+  +      +  +   +  P+ +  R + V ASIG
Sbjct: 61  KVLIPQGAVLARIGGDEFAIAFLSDGENAAALQLSEQILDFLVDPLEIGRRVVVVGASIG 120

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
            A   +  I   E+++ ++LAMY AK  G   +  +  S          ++ DL +A+E+
Sbjct: 121 IAMSPAGAIDREELVRRSDLAMYKAKEAGRARMTLYDPSMDADREQRNALELDLRIAIES 180

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            +L L Y P++      + G+EAL++W+ P  G +S   F+ IAE   +I+++ LF+L +
Sbjct: 181 GDLTLAYQPLVDATTHALNGVEALVRWNRPGHGPVSPEIFIPIAETSGLIESLGLFVLRK 240

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                  W +      + + +N++     +    + ++ ++ +T    SRI L  +E  +
Sbjct: 241 ACETAKQWPE------LNVSVNVSPGQFRNPAFTDYVRYVLKQTEIEASRITLEITEGYM 294

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
           + NP+R+R  + RL+ +G+ + LDDFG+  S + YL    FD +K + SL+ G  E + 
Sbjct: 295 IQNPQRTRQSIERLKGLGVKVALDDFGSGFSSIGYLRQFGFDRIKIDRSLVMGVNEDKR 353


>gi|225375927|ref|ZP_03753148.1| hypothetical protein ROSEINA2194_01563 [Roseburia inulinivorans DSM
           16841]
 gi|225212248|gb|EEG94602.1| hypothetical protein ROSEINA2194_01563 [Roseburia inulinivorans DSM
           16841]
          Length = 566

 Score =  337 bits (865), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 205/555 (36%), Gaps = 28/555 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +      D ++  D+  +++  +        ++   +    +  +  ++  DR  F  
Sbjct: 18  LEIIAECMDDYLYVIDLQNNKMEISQSALDRFMISETHVRNVKQEIMSVVYKEDRTMFAK 77

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            + + +  +       +R    +    W+  R   + + +G     +G  N+   Q+++ 
Sbjct: 78  HMQAVMDGKEKVHDIHYRWLDKNGLPVWVNCRGVVIDDEDGKPGYLVGCLNETGNQRRA- 136

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    DN+TG+     F   L      S         +M I ID +  +N+  G  
Sbjct: 137 ---------DNVTGLLGGMEFCAYL-----RSQKKPVTTGFLMHIGIDDFATVNETHGSN 182

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL S+   + E L     L  L  +++ I+ +   +          + + I   I 
Sbjct: 183 YGDYVLKSVADCMKECLSGNQRLYHLVADQYVIVDLDSTSMDDAIQLKKKIGEKIDEFII 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV- 705
             + E+  +AS G    ++      E  K  E ++  AK  G N++  +R   +   +  
Sbjct: 243 SEKYEVVFSASAGVIDASTVAEGYEECRKKFEFSLKKAKRMGKNNIYFYRQEDYEKFQRN 302

Query: 706 -MIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWD---HPKWGNISSSEFML 759
             I   L  ++ N      + Y PI+  +   ++G EAL+++          +S  EF+ 
Sbjct: 303 GRIISALRSSIANGCEGFEVYYQPIVDCVSGRVIGAEALMRYTMVTEEGKEWLSPVEFIP 362

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+  +I     F+L   A+     +         + +NI+   +   ++ + +   + 
Sbjct: 363 LLEKSGLIIPAGRFVLNEAAKMCREIQQYIPE--FRVNVNISYYQIEHGKIADKILTAVR 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               +P+RI +  +ES  +            L + GI   +DDFGT  S L  +  +   
Sbjct: 421 DNGLTPNRICIEMTESGFIDMTPVFCKFRKVLEENGIQFVIDDFGTGYSNLHCISDMNPG 480

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE-LTRMGCDYIQ 936
            VK +        S E+   + + II M  +I   I  + I  + D    +  +  DY+Q
Sbjct: 481 YVKMDKDFTAKAMSCERDYELFKKIIEMVHSIGIHICVEGIE-KEDWHLKMKELQADYLQ 539

Query: 937 DSHVASPLGFNSILK 951
                 P      ++
Sbjct: 540 GYFFGKPCEKKKFME 554


>gi|167949591|ref|ZP_02536665.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 592

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 194/458 (42%), Gaps = 18/458 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
             I H +A            E+  +       + + +   D      T  P    I G  
Sbjct: 140 GEITHFIAVKEDITAQKRAEEQLRMNATVFETTTEGIMVTDADNRIKTVNPAFTRITGYQ 199

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           +  + G     L       R       D  +G   G L    R       +  +      
Sbjct: 200 AEEVIGRNPRLLSLRPP--RPGVLQG-DVGLGQTAGILVG--RSLEPAQGWQHLPRSGSR 254

Query: 502 MSNSNGDILRYIGIANDI---TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
              S  +  R    +      T +K+S + I   A  D LTG+PNR   LDRLT  ++ +
Sbjct: 255 SPPSVLNTERSRNTSPSSPTSTRRKESEQQIRFQANYDALTGLPNRSLLLDRLTHAINSA 314

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
              +     ++ +D+D++K +ND  G  +GD++L     R+   ++  D +AR  G+ F 
Sbjct: 315 ER-EAWELALLFVDLDQFKIVNDTFGHVMGDELLQHAAERLKSCVRESDTVARFGGDEFI 373

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L   + +   A  A  + + ++    L  RE+ + ASIG   +      S  +L+NA+
Sbjct: 374 ILLQDISGADDAAQIADKVIEKLSRYFLLAGREVIIGASIGITLFPDDASDSDTLLRNAD 433

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +AMY AK    N  + F   +    S R  +++DL  A E +EL L Y P++   D  +V
Sbjct: 434 MAMYRAKETSRNRYQFFTTAMQEQVSIRQHLEQDLRGAPERNELELHYQPVVSATDGRLV 493

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W HP  G I   +F+ +AEE  +I  I ++++    R    W+ Q   P + I
Sbjct: 494 SMEALLRWHHPDQGLIPPDQFIPLAEETGLIGPIGVWVMSTACRQAALWQAQ--QPGLKI 551

Query: 797 LINIASKDLLDNELCEGMQA-LISKTLYSPSRIKLSFS 833
            +NI+S+   +  L   +   ++ +T    S + L  +
Sbjct: 552 AVNISSRQ-RELGLSAKLLELILQETGLDSSLLTLEMT 588



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-- 460
           +  + S A+  S   V   D         P    I G +S    G     L      D  
Sbjct: 39  ELRKLSRALEQSPASVLITDTEGTIEYVNPKFEQISGYSSEEAIGKNPRILKS---GDKS 95

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R++++ + ++    R    +  F  +  D   +W    I P+ N  G+I  +I +  DIT
Sbjct: 96  REDYKELWETIKAGR--EWRGAFHNKRKDGTIYWESASISPLRNEGGEITHFIAVKEDIT 153

Query: 521 EQKKSLEGILCNAF 534
            QK++ E +  NA 
Sbjct: 154 AQKRAEEQLRMNAT 167


>gi|254489955|ref|ZP_05103150.1| hypothetical protein MDMS009_286 [Methylophaga thiooxidans DMS010]
 gi|224465040|gb|EEF81294.1| hypothetical protein MDMS009_286 [Methylophaga thiooxydans DMS010]
          Length = 1147

 Score =  337 bits (864), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 106/435 (24%), Positives = 203/435 (46%), Gaps = 9/435 (2%)

Query: 399  GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
                     +     + + +   D     +T       I G     M G   + L     
Sbjct: 677  KAQETLRLHASVFDNAWEGIMITDDHNRIITVNHAFTEITGYDQYEMIGENPSILSS-GR 735

Query: 459  NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
             D+  ++ +  +      GR + E   R    +F+  I  +  + N  GD+  Y+G+  D
Sbjct: 736  QDKHFYQLMWQTIRQN--GRWRGEVWNRKKSGEFYAEIHTVSAIRNEQGDVTHYLGLFAD 793

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            IT+ K +   +   A  D LT + NR    DRL   L  +   +     V  +D+D +K 
Sbjct: 794  ITDIKNTERQLEDLAHYDALTQLANRTLLSDRLGQSLVHT-RGNQTMLAVCFLDLDGFKP 852

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            +ND+ G  +GD +L+ + RR+   ++  D +AR+ G+ F +++ +     ++      M 
Sbjct: 853  VNDMYGHEIGDQLLIEVARRLEHTVRSGDTVARMGGDEFVLLIANIREVDELDPILSRMN 912

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + IA  I+L ER I+VTASIG A + S  + +  +L++A+L+MY AK  G N    F V+
Sbjct: 913  QKIAEKIHLGERVISVTASIGVALYPSDNVDADTLLRHADLSMYEAKQAGRNGYHIFDVN 972

Query: 699  --SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  +     E +  A++N+E  L Y P + +   E+ G+EALI+W HP+ G + + E
Sbjct: 973  LDRQVHEHRARTERIASALQNNEFCLFYQPKVNMQSHEVTGMEALIRWQHPEQGVLGAGE 1032

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ + E   +I ++  ++LE+    + +W  Q     I + +N++++ +   +  + ++A
Sbjct: 1033 FLPVIESHQLIISLGDWVLEQAMHQVQAWMHQGLQ--IQVSVNVSARQIQHVDFIQKLEA 1090

Query: 817  LISKTL-YSPSRIKL 830
            ++++        + L
Sbjct: 1091 VMARYPTVPAGCLSL 1105



 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 82/209 (39%), Gaps = 16/209 (7%)

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG---------------LVLIVILI 382
           +L I A+++I +    + +AI + + + I +     G                   ++L 
Sbjct: 352 ILFIMAFLVISVGGGLIILAIDRIVISRIRRLTRAIGDYEVGEVKSVSEKVQGNDEIMLA 411

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
                            +    ER S A+ G+GD VWDW+I  D V  +P    +LG   
Sbjct: 412 AREFDVMAERVSDARMALAESEERWSFALEGAGDGVWDWNIQTDEVFLSPQWKKMLGYQV 471

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +     + +  +H +D+      L+ ++  R      EFR+R  D  + W++ R   +
Sbjct: 472 DDIDNQFASCVSLLHPDDKSAVMEHLEDYLAGRINLYAPEFRMRCKDGSWKWLLSRAAIV 531

Query: 503 -SNSNGDILRYIGIANDITEQKKSLEGIL 530
            ++     LR IG   DI+  K   + + 
Sbjct: 532 QTDPEDKPLRMIGTHTDISHLKTIQDKLQ 560


>gi|188576747|ref|YP_001913676.1| Putative signal protein with GGDEF, EAL and two component receiver
           domains [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576938|ref|YP_001913867.1| Putative signal protein with GGDEF, EAL and two component receiver
           domains [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521199|gb|ACD59144.1| Putative signal protein with GGDEF, EAL and two component receiver
           domains [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521390|gb|ACD59335.1| Putative signal protein with GGDEF, EAL and two component receiver
           domains [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 549

 Score =  337 bits (864), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 113/407 (27%), Positives = 179/407 (43%), Gaps = 5/407 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L  +A        +  +DID +  IN+ +   VGD  L    RR+ E L     L R   
Sbjct: 4   LVDAAASGGPPLMIFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGTRGKLWRHGS 63

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +   ++ +   ++    DFA  +R+ + +P+++L   + +T  +G +         S +L
Sbjct: 64  DEMIVVAVRREDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTAVSTLL 123

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
             AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D
Sbjct: 124 DYAEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARD 183

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ    
Sbjct: 184 GRIVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD- 242

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I IN+++  LL       + A++         + L  +ES +  N       +  LR
Sbjct: 243 DFSIAINVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLR 302

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIE 910
             GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   + 
Sbjct: 303 NEGISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLG 362

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            T+IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 363 MTVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 409


>gi|325918868|ref|ZP_08180945.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534905|gb|EGD06824.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 545

 Score =  337 bits (864), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 112/405 (27%), Positives = 181/405 (44%), Gaps = 5/405 (1%)

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +A        +  +DID +  IN+ +   VGD  L  + RR+ E L     L R   + 
Sbjct: 2   DAAASGGQPLMIFHVDIDHFASINENMSGEVGDQALTLVARRLQEFLGTRGKLWRHGSDE 61

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
             I+ +  +++    DFA  +R+ + +P+++L   + +T  +G +       + S +L  
Sbjct: 62  MIIVAVRRDDTPLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSVLLDY 121

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEE 734
           AE A Y A   GGN V  +  +S  +      I   +  A+ + EL L Y P++   D  
Sbjct: 122 AEEASYQAAREGGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARDGR 181

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           IVG+EAL++W  P  G +    FM  AE L +I  I  ++L+   R    WRDQ      
Sbjct: 182 IVGMEALLRWQSPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD-DF 240

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N+++  LL       + A++         + L  +ES +  N       +  LR  
Sbjct: 241 SIAVNVSTLQLLRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLRNE 300

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETT 912
           GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M   +  T
Sbjct: 301 GISLSLDNFGTGDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLGMT 360

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +IA  +  +  +  L R  CD  Q      P+   S    L+ R+
Sbjct: 361 VIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 405


>gi|325678464|ref|ZP_08158080.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324109832|gb|EGC04032.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 550

 Score =  337 bits (864), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 95/543 (17%), Positives = 208/543 (38%), Gaps = 29/543 (5%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           ++  D+  +    + +     G     M      W  +IH +DR  +   +      ++ 
Sbjct: 25  LYICDMSSNVTRWSRNAVEYFGFPGEYMDNAGDIWASHIHPDDRQRYIDDIAQIFSGKKD 84

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND--ITEQKKSLEGILCNAFQ 535
           R   ++R    D  +     R   M  ++G+   +IG   +  I ++             
Sbjct: 85  RHDLDYRAMNKDGDYVICTCRGNVMRGNDGEPDIFIGTIENHGIADRV------------ 132

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  +G+ N   FL  +  +     T        ++I I+ + +IND+ G   GD VL  +
Sbjct: 133 DAASGLYNVYEFLQDIRDLRLRGKTAVE-----LLIGINCFSEINDMYGHNFGDRVLKQV 187

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +  +      + R+ G RF   L        I +    ++  +   + +    I ++
Sbjct: 188 GMVLVTIFGESSKVYRMDGVRFACALTD-TAIGHIYELFRKIQFEMKYNVFVDGIRIPIS 246

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713
            S G             +  +A  A+  +KH     +  F  +   + +  ++    L  
Sbjct: 247 ISAGAVVLDGDYDEF-SVQSSARYALERSKHEQHGELYVFENNMKDTAKRRLELISALRK 305

Query: 714 AVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           ++ N     +L Y P+     EE++G EAL++W+   +G +   EF+ + E+      + 
Sbjct: 306 SMLNDYEGFFLCYQPLFSSESEELIGAEALLRWESRDFGTVMPGEFIPLLEKDPSFFELG 365

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L R   +  S       P   + +N++   L      E +++++ +T +    + + 
Sbjct: 366 CWILRRALTE--SMMMVDRNPDFTLNVNVSYTQLSHPLFRESVKSILKETGFPTHNLCIE 423

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES         +  +G L+ +GI + +DDFGT  S L+ L  +  +T+KF+       
Sbjct: 424 LTESCRQLEKVYLQAEIGFLKSLGIKIAIDDFGTGFSSLNLLSDLSVETLKFDRGFTKDI 483

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI+++I   A  +   +  + +     I  + +      Q  + + P+     
Sbjct: 484 MTNTANQAIIKAIANCASELHVHVCLEGMESREMIDFVRQYCIYSFQGYYFSRPVVMGQF 543

Query: 950 LKL 952
           +++
Sbjct: 544 MQM 546


>gi|152965987|ref|YP_001361771.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151360504|gb|ABS03507.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 640

 Score =  336 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 108/447 (24%), Positives = 197/447 (44%), Gaps = 25/447 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD----------DNLRPTVMVIDIDKYK 577
            +  +A +D LTG+ NR +F  +L  ++D    D            +R  V+ +D+D+ K
Sbjct: 188 RMAWHASRDPLTGLFNRGAFFAQLQRMIDTVPGDLESRGPGTGPAQVRVGVVFVDLDRLK 247

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI-ILISENNSLKI----AD 632
            +ND LG   GD ++ S+  R+    +  D++ARL G+ F +  L+   +  +       
Sbjct: 248 TVNDTLGHDAGDALIRSVAARLRTAARPRDVVARLGGDEFAVACLVHARDEQEATRTLHA 307

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTS--SKITSSEMLKNAELAMYHAKHRGGN 690
            A     ++  P   L+     +AS+G A        + +  +L+ A+ AMY AK  GG+
Sbjct: 308 IATRHLHAVRTPDARLDPSARSSASVGAALSVPLPQPVGADTLLREADTAMYAAKQAGGD 367

Query: 691 HVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            V +              +   L  A++  EL L Y PI+      ++ +EAL++W HP 
Sbjct: 368 RVSTTGTVGDDGGATAERVAPSLQRALDRDELVLHYQPIVDARTRHVLSVEALVRWQHPD 427

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW----RDQANMPPIFILINIASKD 804
            G + ++E +  A    +  A++ ++L      + +W    R   N  P  I +N++   
Sbjct: 428 RGLLGAAEVLDRAHAERLEVALDRWVLRTALAQLRTWETTRRADGNRAPSLINVNVSPAS 487

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L   +L E +   +      P +++L   E+  +   E +   L RL   G++L  DD G
Sbjct: 488 LSRPDLAESVLGAVRDGAARPEQLRLELPETASLSTMEVAGPQLRRLAGAGVALVFDDMG 547

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
              S L  L  IP   +K + S + G    +   A++  +  +A  +   I A+ +    
Sbjct: 548 AGASSLRNLSTIPVAGMKIDRSFVAGMLTRQGDRAVVEMLTNLAVGLGLRITAEGVEDAA 607

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
             +EL R+G   +Q  H+A P   + +
Sbjct: 608 QEQELRRLGVTALQGYHIAHPRAADDL 634


>gi|261342009|ref|ZP_05969867.1| protein YhjK [Enterobacter cancerogenus ATCC 35316]
 gi|288315926|gb|EFC54864.1| protein YhjK [Enterobacter cancerogenus ATCC 35316]
          Length = 657

 Score =  336 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 203/504 (40%), Gaps = 36/504 (7%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H          L+      +   Q E      D++                  +  + 
Sbjct: 171 IVHP--LRRIARELNDLSPQEQVGHQLELPRLHHDDE------------------IGMLV 210

Query: 515 IANDITEQKKSLEGILCN--AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            + +I +Q+        N  A +  ++ +PN+   +  L   +    T       +MV+ 
Sbjct: 211 RSYNINQQRVMRHQAELNSSATRFPVSDLPNKAFLMAMLEQTVARQQTT-----ALMVVA 265

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            +  +    VL  +  + +L++L  ++  +L    +L ++SG    II            
Sbjct: 266 CETLQDTAGVLKESQREMLLLTLVEKVKSVLSPRMVLTQVSGYDLVIIAHGVKEPWHAVT 325

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +   I   + +   ++  +ASIG A +    +T+ ++ + A  A + A+ +G N +
Sbjct: 326 LGQQVLTVINERLPIQGIQLRPSASIGIAMFYGD-LTAEQLYRRAVSAAFTARRKGKNQI 384

Query: 693 ESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + F        +  +  + D+  A++N +  +   P + L+  E+   EAL++   P   
Sbjct: 385 QFFDPEQMEKAQQRLTEESDILTALDNRQFAVWLQPQVNLLTGEVKSAEALLRVQQPDGA 444

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
                  +   E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +
Sbjct: 445 WELPEGLIERIESCGLMVTVGYWVLEESCRQLAAWQERGIT--LPLSVNVSALQLMHPTM 502

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  LI +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L
Sbjct: 503 VSEVLELIHRYRIQPDTLILEVTESRRIDDPNEAVAILKPLRNAGVRIALDDFGMGYAGL 562

Query: 871 SYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             L +   +P D +K + + + G      +++++II MA+++   +IA+ I  E   + L
Sbjct: 563 RQLQHMKTLPVDVLKIDKTFVDGL-PNDSSMVQAIIQMARSLNLHVIAEGIETEAQRRWL 621

Query: 928 TRMGCDYIQDSHVASPLGFNSILK 951
              G +  Q       +  ++  +
Sbjct: 622 ADAGVEGGQGFLFGRAVPSDAFEE 645


>gi|119899954|ref|YP_935167.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119672367|emb|CAL96281.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 752

 Score =  336 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 207/512 (40%), Gaps = 32/512 (6%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVR----AADN-QFHWMIIRIRPMSNSNGDILRYIG 514
           D    R +L   +  ++     E +V     + D  +    +  +R + ++  ++LR   
Sbjct: 252 DDTRIRELLRQALAEQQSLADAESQVLYFPGSGDGPRAATYVATLRALDDTELELLRVFA 311

Query: 515 I-----ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
                   +++     +  +   A++D+L  +PN  + L  L ++L   A  D     ++
Sbjct: 312 SNINSGLINVS----LVSQLDRMAYEDSLLAMPNANALLRCLDSVLARPAPRDR---ALL 364

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID+D+Y +    LGI  GD +L  +  R+      P ++ARL  + F ++         
Sbjct: 365 FIDLDQYSESCLSLGIEQGDLLLARMAARLRRSFPPPALVARLHDDTFAVLGPP------ 418

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHR 687
            A     + +  A   ++ + E+    S+G A         ++   +    L +  ++ +
Sbjct: 419 AALDLARLDRLEAG--DVDDNELAPFISLGAARIDLDHYQGSAKSAMATGSLLLKQSRRQ 476

Query: 688 GGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G   V  +         +   +  +L  A+   E+ +       L    +VG EAL +W 
Sbjct: 477 GPGRVVEYEPGMETPHNLRFQLARELHHALRGREIGIALQAQYDLASGTVVGAEALARWT 536

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 I  + F+ +AE   +I  +   ++E     +           + I +N+++  L
Sbjct: 537 RADGTPIPPTTFIPLAEANGLIAPLGKHIIELTCEALARLAAAGFGH-LPIAVNVSALQL 595

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               L + ++A +      P  +++  +ES+ M     +  +LGRL + G  + +DDFGT
Sbjct: 596 AQTGLLDELRATLEAHGLDPHILEIEVTESIAMDERYATGNMLGRLCEAGFPIAIDDFGT 655

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL  +P  T+K + S +     T +R  I   II + + ++  +IA+ +     
Sbjct: 656 GYSSLAYLRTLPAHTLKIDRSFVQEIGVTPERQTIADMIIGLGRRLDMRVIAEGVENSAQ 715

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              L   GC + Q    A P     ++  L+ 
Sbjct: 716 ADWLKTRGCHHAQGYLFARPEPVAGLIARLQS 747


>gi|152996580|ref|YP_001341415.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150837504|gb|ABR71480.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 747

 Score =  336 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 114/685 (16%), Positives = 250/685 (36%), Gaps = 35/685 (5%)

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
           +  K   IT        I                +  L S+        +    K    A
Sbjct: 74  FSKKYTKITAVLFLITLITTSFLLLVFSDEFHAEKYALISLYSLPLITRLLFSFKASLVA 133

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
           +++      +           +      +    L  GL   V  I  T+  +        
Sbjct: 134 MIINIYPFYLVTSDNAQIDIASSFYFQLLTFVTLNIGLPFAVSRIIQTLENNTSHMRLLY 193

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPY 455
           Q +  +          +G      D     +     +  +L  +  +      I +WL  
Sbjct: 194 QKLNDNYAMYEEFFENTGTPTLLCDQRGKILKANQLVRELLTDSPQTNISDSTITDWLSP 253

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           +    R  +++ +      ++  +  E R               R     +G    Y+  
Sbjct: 254 LGKTGRFFWQSNIAECTLKQKTNIHIEIR---------------RASLTQHG---YYVLH 295

Query: 516 ANDITEQKKSLEGILC-------NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
             + T+ K   + +          A  D LT +PN + F  ++   +D    D +L   +
Sbjct: 296 LQNTTQLKAIQQELENTQQTNSRLAHYDLLTLLPNHRHFCRQVNQRIDE--QDKHLTGAM 353

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            +I I ++K +N   G    + V+++ ++ + + L    I+ RL G +F   +      L
Sbjct: 354 FIIRISQFKLLNKQYGKDNANKVILNFSKTLQKKLSEQAIIGRLRGVKFSCFVPLGQAYL 413

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              + +  +   +   I +    + +   +G A + +   T+ E+L++ E+A+ ++    
Sbjct: 414 IQKNLSALIHSVLPSQITVDGNRLNMDYQVGIAYYHTDGKTAEELLEHCEMALEYSTSTD 473

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                +  +     +   +   L  A++N ++ L   P +   + +I   EAL +W    
Sbjct: 474 RFSYYNRSLEHNLIEEHKLGLKLSTAIKNKKIVLWLQPQVSP-NGQIRSFEALARWQ-CD 531

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              I  + F+ IAE+L ++  +   ++  +   +  W  +    P  I  N+A ++L+++
Sbjct: 532 GQFIPPTTFIKIAEKLGLLPLLAENLVRELVSTLTEWHKEHIHTP--IAFNLAGQELMND 589

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                + ALI+   +    ++L  +E+  +         L  L + G S+ +DDFGT  +
Sbjct: 590 SFFALLMALIADNPWLSDMLELEITETSPVMTHPLIHKRLRSLSQYGYSIAIDDFGTGQA 649

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  L  IP + +K +   ++     +    I++S I +A+++   +IA+ I  +     
Sbjct: 650 SLGQLVDIPANILKIDRRFVSPLPGDQRHVDIVKSTIQLAESLGMKVIAEGIETKEQASL 709

Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951
           L  +GC  +Q  + A P   +   +
Sbjct: 710 LAALGCQTLQGYYFAKPSPMSDWTE 734


>gi|118475273|ref|YP_891570.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
            [Campylobacter fetus subsp. fetus 82-40]
 gi|118414499|gb|ABK82919.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
            [Campylobacter fetus subsp. fetus 82-40]
          Length = 1375

 Score =  336 bits (863), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 118/573 (20%), Positives = 233/573 (40%), Gaps = 23/573 (4%)

Query: 391  LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
            L      +   +  +  +     S + +   D+    +        I G     + G   
Sbjct: 708  LEDITIKKESEAQLQLIASVFSYSREGIMITDLNGLILDVNDAFVQITGYGKEEVRGKYP 767

Query: 451  NWLPYIHINDRD--NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            N L      DR    F   + + +    G  + E   +  + Q +  I+ I  + N   +
Sbjct: 768  NMLKS----DRHNNKFYAKIWADIKQ-SGFWRGEIWNKRKNGQIYPEILTISAVKNQLDE 822

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +  Y+ I  DIT  K++   +   A  D LT +PNR   L++L   ++    +   +  V
Sbjct: 823  VQHYVAIFYDITYIKENETRLEKIAHYDPLTKLPNRFLLLEKLAIAMNNVKENGK-KIAV 881

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNS 627
            + +D+D +KK ND  G   GD +LV+++ R+  ++   D ++AR  G+ F  ++    + 
Sbjct: 882  IYLDLDGFKKANDTYGHNCGDGLLVAISSRMQGIISNGDNLIARFGGDEFVALINDVRDE 941

Query: 628  LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKH 686
              +      M  +      +   +I V+ SIG A +      +  ++LK A+ AMYHAK 
Sbjct: 942  NALIKILDDMLLAARDKTVINSNKIQVSTSIGVAFYDRHSDISMEDLLKRADWAMYHAKL 1001

Query: 687  RGGNHVESFRVSSFRSDRVMIKEDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             G N    F  +         +  L     ++ E +L+Y P++ + D +I   E L++W 
Sbjct: 1002 SGKNRYYIFDENRDEIFNQYNESLLSKDKFDSDEFFLMYQPVVNIKDAKITSFEVLLRWK 1061

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            HP+ G +   +F+ I  +      + ++++    RD     +      I + INI  + L
Sbjct: 1062 HPQKGIMLPVDFLHIFSDKVWFDELTIWIIINALRD----SEDIFNKGIKLSINIPFEQL 1117

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             D       + L   +      +++  ++++ + + E   L L     +GI    DDFG 
Sbjct: 1118 NDEIFFAKFKDLYKNSDLRFDMLEIEITDAMSVKDIENEILNLVIYEDLGIKFVFDDFG- 1176

Query: 866  KCSLLSY---LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
              S LS    +   P +T K N             + +L++I+ +    +   I K +  
Sbjct: 1177 --SSLSLANTMKTAPTNTYKINKKYALELLDRADNVDMLQTILNICSAFKKRAIIKGVEN 1234

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            E     +  +G   +Q + ++ P+  + I  ++
Sbjct: 1235 EYIYNIVANIGFVELQGNFISKPIFKDDISDMI 1267



 Score = 73.8 bits (180), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 4/145 (2%)

Query: 393 TGYFSQGIFSDG-ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG--PI 449
               ++ IF D   +    +  +  + +++DI +   T +     +LG  +    G    
Sbjct: 581 NQKLTEDIFKDKINKYQNLLWATSGMSFEYDIKKRVYTFSNSFINLLGYRNSDDLGVINS 640

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI-RPMSNSNGD 508
            N    ++ +D D      D+++      +  E R  A D ++ W+ I+     SN +G 
Sbjct: 641 ENISKIVYKSDLDKVVLAWDNYLKGLSPSINTEIRCIAKDGRYIWVCIKAKTATSNLDGT 700

Query: 509 ILRYIGIANDITEQKKSLEGILCNA 533
                G+  DIT +K+S   +   A
Sbjct: 701 PNLISGMLEDITIKKESEAQLQLIA 725



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLP 454
           +Q +  +  ++   +L S  ++  + +  +   +  + +++ ILG     +     ++  
Sbjct: 450 NQKMIENLNKEKHLLLSSPILIATFKVDENWKIIQISNNVSDILGYNIEDILFKNFSFRS 509

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYE------FRVRAADNQFHWMIIRIRPMSNSNGD 508
            IH  D  N    +   +       + +       R++ ++  + W  + I+   ++NGD
Sbjct: 510 IIHKEDIANLIVDIKHRMKLIDTPYETDNELDRLCRIKLSNGNYDWFKVFIKISKDANGD 569

Query: 509 ILRYIGIANDITEQK 523
            +       + T QK
Sbjct: 570 -MFVTVFMFNSTNQK 583


>gi|218674335|ref|ZP_03524004.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 410

 Score =  336 bits (863), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 95/393 (24%), Positives = 181/393 (46%), Gaps = 7/393 (1%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++D+D +K  ND  G   GD VL  + R + +  +  DI+ARL G+ F  +L   +++
Sbjct: 1   MLLVDLDHFKATNDSFGHPAGDAVLSHVARALQKTFRSGDIVARLGGDEFAALLPGISDA 60

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-H 686
             +   A     +IA       R + V+AS+G A         + +++ A+LA+Y AK  
Sbjct: 61  ATLEGIAGRAVAAIATECQFDGRLLPVSASLGGAVVPGHATDEATLMRVADLALYAAKAK 120

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           R    +      + R ++  +   L  A +  E  + Y   + L     +G EAL++W H
Sbjct: 121 RNTAVIFDESSFAQRLEQNRLASALAFAADRDEFVVYYQQKVNLQTGRHLGFEALVRWRH 180

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G +    F+ + E   +I+ +   ++  +ARD+ +W+         + IN+    L+
Sbjct: 181 PQLGILPPGRFLPLME-GHLIQGMTRCIVNTVARDLRAWQAAGLAVG-SVAINLPEALLV 238

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGT 865
            ++  + + A +           +  +E V +     +    + R  K G+S++LDDFGT
Sbjct: 239 GDDGYDLIAAAVGANRLDWLDFSIEITEDVFLNRGANQIAETISRFSKHGVSVSLDDFGT 298

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L +L   PFD +K + S +    +      I+R+II +A+N+    +A+ I  E+ 
Sbjct: 299 GFASLVHLRDFPFDELKIDRSFVAEIGKDVRSEQIVRAIIDLARNLGKRCVAEGIEEEVQ 358

Query: 924 IKELTRMGCDYIQDSHVASPLGF-NSILKLLKE 955
              L   GCD  Q      P     ++ +L++ 
Sbjct: 359 RDFLLHAGCDIGQGYLFGKPEPALVAVERLVRR 391


>gi|160940183|ref|ZP_02087528.1| hypothetical protein CLOBOL_05072 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436763|gb|EDP14530.1| hypothetical protein CLOBOL_05072 [Clostridium bolteae ATCC
           BAA-613]
          Length = 908

 Score =  336 bits (863), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 174/439 (39%), Gaps = 23/439 (5%)

Query: 519 ITEQKKSLEGILC-NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +T Q+   E +L   +  D LT   NR  F+  ++ +      +      V+ +DI+  K
Sbjct: 481 LTMQRNENETMLFEMSQIDRLTSFYNRNRFIQDVSEL-----KECKESVGVVYLDINGLK 535

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           +IND  G   GD ++      +   +     L R+ G+ F II +               
Sbjct: 536 EINDSFGHDTGDKMIKECADIVKNSVDSK-YLYRIGGDEFVIIYVDITEES-----FCDN 589

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH---RGGNHVES 694
            + +       + +  +        W        +++K A+  MY  K    +G +    
Sbjct: 590 VQLLKNAFEKSKCQAAIGCR-----WNEECTHIQDIIKEADELMYDDKKRFYQGHHATGR 644

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           +R ++     +   + L   +EN    +   P I + D  +VG EALI++       I+ 
Sbjct: 645 YRHNNDILRSLAEPDVLNEKIENHNFKVYLQPKINVEDCRMVGAEALIRYRDENGAIIAP 704

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ + E+  +I  I+ ++ E + + +  W  Q     + I  N +     D+   + +
Sbjct: 705 DKFIPVLEDTYLISKIDYYVFEEVCKTLSIWARQ-GKSAVTISSNFSKLTFRDDRFIKRL 763

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + +  K     + +++  +ES    N +     + ++R  G  + +DDFG + S L+ L 
Sbjct: 764 EEISDKYHVQRNYLEIEITESANFTNLDTLVTRINQIRDSGFRVAMDDFGVESSNLALLS 823

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            + FD +K +   +      ++   I+  +  M   +   ++A+ I     ++ L   G 
Sbjct: 824 LVKFDILKIDKGFVKDIISNKRAQIIIGMMTRMCSEMGIQLVAEGIEDGQQLEVLREYGV 883

Query: 933 DYIQDSHVASPLGFNSILK 951
             +Q    + P+  +   +
Sbjct: 884 KTVQGYLFSRPISISEYEE 902


>gi|251794487|ref|YP_003009218.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. JDR-2]
 gi|247542113|gb|ACS99131.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. JDR-2]
          Length = 408

 Score =  336 bits (863), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 97/407 (23%), Positives = 195/407 (47%), Gaps = 6/407 (1%)

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            A     R  V +I ID++  +N+  G+  G+ VL S+  R+ +       +  +SG+ F
Sbjct: 3   RARASGQRLVVALIQIDRFYGVNEAKGLEAGNQVLESIGGRLSQGA-DTAFVTLISGDTF 61

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            +      +  + A+    M+ +   P++    E+ +T+SIG   +  +  TS  +L +A
Sbjct: 62  LMAREIGYSQAECANAVEEMKYAAQYPVSYEGAELNLTSSIGTCLFPQNGRTSERLLGHA 121

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
           E A++ ++ +GGN +  +           ++    L  A+   + +L Y PI R     +
Sbjct: 122 ETALFKSREQGGNRITFYSEEETAQMNRWLEVGALLRPALYLRQFHLSYQPIFRTEGGRL 181

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G EAL++W+ P+ G I  +EF+ IAE+  +I  I  + L    + +   ++   +  + 
Sbjct: 182 RGFEALLRWNQPELGAIWPAEFIPIAEQNGLIVPIGEWALREACKMLAGMQE-YGLKELV 240

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I +N++   L+DN  C  +  ++ +    PS ++L   E V++   E++   L +LR +G
Sbjct: 241 IAVNVSHVQLMDNSFCSMVAHVLEEAGIEPSCLELEVKEDVILHFTEKTLAALSQLRALG 300

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTI 913
           + +TLD+FG   + L+ L  +P ++VK + S +     +     I+ ++I +   +E  +
Sbjct: 301 VRITLDNFGEGYASLANLKQLPVNSVKISKSFIRQIDVQSVERHIVEAMIGLLHKLEIEV 360

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
           IA  +  E   K L    CD++Q   + SP+  + +   +  + P  
Sbjct: 361 IAGGVEYEEQYKLLKEWNCDFVQGFLLGSPMQPDLLDMSIIRKSPQT 407


>gi|251771301|gb|EES51882.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 811

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 184/448 (41%), Gaps = 18/448 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           +   + +   +       + I   A +D LTG+ N++ F D +      +    +   ++
Sbjct: 365 LTTVVNVLGSVKAMYLYTQEIEYYASRDPLTGLYNQRIFWDLMNYETGRADRHGSPS-SL 423

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           ++ID D +K IND  G A GD VLV L R I E  +  DI+ R  G+ F +I+ SE +  
Sbjct: 424 LIIDCDNFKVINDTYGHAAGDRVLVGLARIIEEACRTGDIICRYGGDEFAVIV-SEADVN 482

Query: 629 KIADFAIAMRKSIAM---PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                   + +++      I       T++ SIG AS+      + ++   A+  MY AK
Sbjct: 483 SAHALGDRIHEAVRRARFEIPDAPYPATLSVSIGIASYPRHAKHARDLFVVADHMMYRAK 542

Query: 686 HRGGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL- 741
             G + V                  +  +  AV    +  V+ PI  L    I G E L 
Sbjct: 543 KMGKDLVVEANEDDVAEAFRAAGENQVTIIRAVTEKRVVPVFQPIRDLSGGAIFGYEVLS 602

Query: 742 -IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
            ++        + + +F+   EE  +I  ++   +ER   +++  +         + +N+
Sbjct: 603 RLRLSDDDPVLVPAGDFIETVEEAGLIARMDYLTMERAFAEVVRRKFSGP-----VFLNL 657

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + + L+ ++    ++ ++      P ++    +E   + N +     +  LR  G    +
Sbjct: 658 SPRSLIVSDFMPTVEGIVRAAGIDPGQVVFEITERETVKNLKILEGFIQNLRLHGYRFAI 717

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK---RIAILRSIIPMAKNIETTIIAKD 917
           DDFG+  + L+YL + P D +K  G  + G         AI+ +I+ +A+ +    I + 
Sbjct: 718 DDFGSGFASLNYLRFFPVDFLKIEGEFIRGLGGDGPVDGAIVSAIVTLARTLNIPTIGEF 777

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLG 945
           I      +   + G  Y Q  H+  P  
Sbjct: 778 IESASIGEMARKTGVMYGQGYHLGHPSP 805


>gi|218679572|ref|ZP_03527469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli CIAT 894]
          Length = 317

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 71/293 (24%), Positives = 141/293 (48%), Gaps = 3/293 (1%)

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSE 719
            +      +++++K A+ AMY AK  G N    +         +R+ ++ +L  A+E  E
Sbjct: 1   LYPDDSADANDLVKYADSAMYLAKRSGRNSFRFYSKDLTASAEERMRLESELRRAIERQE 60

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L L Y P + L +  +VG EAL++W HP+ G I  + F+ +AE+  +I  +  ++L    
Sbjct: 61  LELHYQPKVLLENGAMVGSEALLRWRHPEMGMIPPARFIPVAEDTGLIVELGRWVLREAC 120

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           +        +  P   + IN++ K      L + +  ++ +T      I++  +ES+++ 
Sbjct: 121 QTATELNADSRSPH-KVAINLSVKQFQSAGLVKSIAEILDETGCRAEWIEIEITESLLLD 179

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL 899
               +   L  LR +G S+ +DDFGT  S L+YL   P DT+K + S +  +  +   ++
Sbjct: 180 QKNETLQALSELRSMGFSIAIDDFGTGYSALNYLARFPIDTLKIDRSFINSTDRRNEELV 239

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++I+ +A+ +  +++A+ +        L   GC   Q    +  +    I+ L
Sbjct: 240 KAILSIARCLGQSVVAEGVETAEQAAFLAANGCGSAQGFLYSKAVPKADIIAL 292


>gi|59714221|ref|YP_206996.1| EAL/GGDEF domain-containing protein [Vibrio fischeri ES114]
 gi|59482469|gb|AAW88108.1| EAL/GGDEF domains protein, adjacent to Syp polysaccharide locus
           [Vibrio fischeri ES114]
          Length = 630

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 184/437 (42%), Gaps = 15/437 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  ++ + + +  +   D  TG  N  +    + +++         +  ++ I     +K
Sbjct: 189 IDCRRAAEQKVEYHKNHDVNTGFLNPIAIHKHVDSLIK-----SETKFVLLHIHFANSRK 243

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           I    G    D +L+    ++ ++        RL  +   +I+  + +  K+      + 
Sbjct: 244 IQQEYGYQAFDSLLIEYRSKLTKITDTSVT-GRLGSSDILLII--QTDKEKLPQLCQHLS 300

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
           +         E+ + +   +G A  +   I+ S++L+ A   +   +  G     +    
Sbjct: 301 EIGQANYTANEQSLHLQTYVG-AVHSKEGISRSDLLQFAYDTVVKCQSLGKTFTIADVSL 359

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +        I+  L  AV N +L+L Y P +  ++++ +G EAL++W+HP  G I++  
Sbjct: 360 PTQSSLSEHKIERYLLEAVRNHDLFLNYQPKVCPVNKKWIGCEALLRWNHPHLGAIANDV 419

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            + +AE   +I  +  F L    +    W    + P   + +NI++  L D      ++ 
Sbjct: 420 LIQLAERNGLIYELGNFALRNAIQQASEW--ILHSPNFVMAVNISAVQLKDPHFVTHIKQ 477

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+S        ++L  +ES ++ +   +   L +L  +GIS+ LDDFGT  +   YL   
Sbjct: 478 LLSLYQLPSKNLELEVTESGLISDEPLAITTLSQLNNMGISIALDDFGTGYASFQYLKKY 537

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF ++K + S +      E    I+ ++I +AK ++  ++ + +  +     + + G D 
Sbjct: 538 PFSSLKIDKSFIANIEQNEDDQNIVCAMINIAKKLQLKVVVEGVENQNQEAFVVKEGIDL 597

Query: 935 IQDSHVASPLGFNSILK 951
           IQ    + P+      +
Sbjct: 598 IQGYLYSKPISATDFEE 614


>gi|237733452|ref|ZP_04563933.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383487|gb|EEO33578.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 738

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 180/436 (41%), Gaps = 12/436 (2%)

Query: 523 KKSLEGILCNAFQDNLT-GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           KK    +   AF D LT G+ N   F      +++ +        TV+ +DI ++K IN 
Sbjct: 308 KKHKNWLEKIAFTDPLTAGLNN-AGFQLDAQKLVNTA---PPSNYTVIFLDIKQFKLINQ 363

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G+DVL  +   I   +   +++AR   + F I L +E+N   I      +   I
Sbjct: 364 NYGFNKGNDVLKHIYNVIYNNISSNELVARSENDHFFICL-NESNKQIIQSRLDMIIAEI 422

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   +   +T   G     +     + +   A LA      +         + +  
Sbjct: 423 NSF--AKNKASQLTILQGACLIENPNSEINIIQDYARLACRLNSKKSKCTYYDKEILNTM 480

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                + +    +++N + ++   P I + + +I G EAL++W HP+ G I  S+F+ + 
Sbjct: 481 KKEQELNDLFENSIKNKDFHMFLQPKIIISNNKIGGAEALVRWFHPERGTIYPSDFIPLF 540

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  ++L++ E +   +     +    P  I +N++     DN+  +    +  + 
Sbjct: 541 ERNDNIIKLDLYIFEEVCIFLQDMIAR-GEKPFVISVNVSRVHFKDNDFLKAFARIKEQY 599

Query: 822 LYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               + I+L  +ES+   N   E  +  + ++ + G   +LDDFG   S L  L     D
Sbjct: 600 RIPNNLIELELTESIFFDNQQIESIKDTIHQIHQYGFLCSLDDFGAGFSSLGLLKDFKVD 659

Query: 880 TVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K +       + +K   I+ + I +A  +  +++A+ I     ++ L  + C+ +Q  
Sbjct: 660 GIKMDKKFFDDISSQKSKDIIANFIELADKLNISLVAEGIETLEQLEFLKSVHCNMVQGY 719

Query: 939 HVASPLGFNSILKLLK 954
             + PL  +  +  LK
Sbjct: 720 IYSKPLPVDEFILWLK 735


>gi|153833253|ref|ZP_01985920.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148870524|gb|EDL69439.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 904

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/569 (18%), Positives = 230/569 (40%), Gaps = 22/569 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               +  +    E+ +     +   +    I R  V        +L      + G   + 
Sbjct: 343 NSMTALQLKDSLEKFTALYESTSLGMLIV-IERQIVDANQRALDLLSYDKDIILGKQLD- 400

Query: 453 LPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                  D + +   +       R     +E ++  +       +I    + +   + L 
Sbjct: 401 -DLCASGDEECHVDIMFKQLQSGRNL---FEAQMLNSHGTQIDCLIEATLIQHHGQNALM 456

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +    D  E+K+  + I      D ++G  NR   L  L+ ++           + + +
Sbjct: 457 LL--IQDQREKKQQAQLIQDLTDYDRISGFCNRPVILGALSELIAHRPNQ----FSFIYL 510

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
             +  K+I++V G  + D+ +  ++    +       + R+S + F I++ S +      
Sbjct: 511 SSNGLKQISEVYGHVIFDEAIQYISMLFRQEF-EGYQIGRISESEFIIVIPSSDKCQFAM 569

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           D A  +   +A  + +   ++++ +         +  T  E+L     +    +   GN 
Sbjct: 570 DSANKLLNQLAHKVEVAGIQLSLKSYAVMVDPEITHQTLDELLLVTRYSSQTMQRENGNK 629

Query: 692 VESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V+      S+     + I  DL LA+EN  +   + PI+    EEI+G EAL +W HP  
Sbjct: 630 VQITGKALSTQAQTSMTIHRDLELAIENDNIVPFFQPILNTQTEEIIGFEALARWQHPSL 689

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIAR---DIISWRDQANMPPIFILINIASKDLL 806
           G IS + F+ +AE+  +I  +   +L++  +    +   R    +  + + +N++++   
Sbjct: 690 GMISPAVFIPMAEQNQLIVELGESILKQSCQFISQLNESRQAYGLKNLNVHVNLSAQHFY 749

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            + L   ++ +  +   S  ++ L  +ES++MG  E     +  ++++GI L LDDFGT 
Sbjct: 750 HSSLTTSLELMFDQYQLSSGQLALEITESMLMGIEEEVIHRINEIKQLGIQLALDDFGTG 809

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  S L   P D VK + S +        A  ++R+I  MA+ +  TI+A+ +     +
Sbjct: 810 YASFSSLCSFPIDIVKLDKSYIDQIETNDRAKTLVRNIANMAQELGLTIVAEGVETMSQV 869

Query: 925 KELTRMGCDYIQDSHVASPLG-FNSILKL 952
           ++L     D +Q  +   P+   ++  + 
Sbjct: 870 RKLKVWNIDELQGFYFYKPISKLDAFTQF 898


>gi|228919411|ref|ZP_04082778.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840242|gb|EEM85516.1| Sensory box/GGDEF [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 338

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 165/337 (48%), Gaps = 6/337 (1%)

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +LI       + + A ++ K+I+    + E ++ ++ASIG     +       + +  + 
Sbjct: 1   MLIENITKEYVEEIAKSILKNISESFVIEEEDVYLSASIGIVMVPADGEDEKILFQRVDA 60

Query: 680 AMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+  AK +G  H   +       R  R +I+  L  A+E +E +L Y P I +  ++I  
Sbjct: 61  ALEKAKEKGKGHYHFYCSGLDCEREQRFIIENQLHRAIEKNEFFLYYQPQINIETKKIAS 120

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EALI+W++ + G +S ++F+ +AE    I  ++ +++ ++ + +  W ++     + I 
Sbjct: 121 MEALIRWENKELGLVSPNQFIPLAERTGFIIKLDEWVVNQVCQQLREWLNKGYEV-VPIA 179

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+++      L E +   + K       + +  +E  ++ + + S+ +L +L++  + 
Sbjct: 180 VNISARHFRSITLIEMITRALHKYNVPAHLLAIEVTEGALI-HKDISKRVLIQLKEQNLK 238

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II +A  +E  +IA
Sbjct: 239 IHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIHIDERDTNITAAIIHLAHTLELNVIA 298

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +  +  I+ L       +Q  + + P+    +  +
Sbjct: 299 EGVEKKEQIQFLKEKNVKLVQGYYYSRPISKYDMENM 335


>gi|255305224|ref|ZP_05349396.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 744

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 180/436 (41%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++K +  I   A+ D++T   N   F   +  ++  S    +    ++ ++I  +K IND
Sbjct: 303 RRKYVNQIENIAYLDSITNGINSTKFSMLVKPLISES---PDSTYMMIAMNIKDFKLIND 359

Query: 582 VLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   G+  L  L   +   + +  + + R   + F +++ +      +      +   
Sbjct: 360 CFGSEKGNMTLKHLYNILYKNIDENEEFVCRHDADLFYLLIKNRPVLEALELL-YKIEAD 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
                   E    +  S+G  +  +       +  +A  A       H+      S    
Sbjct: 419 TNYFNKNRENPYFLRLSVGIYTIENHNEDLITIQDHANTARKSFNKTHQSDFSFYSDIER 478

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I   +  A+EN E ++   P I +   +I G E+L++W + + G I  S+F+
Sbjct: 479 KRLISEKEISNLMEKALENKEFFMCLQPKIDIKSGKISGAESLVRWKNSEKGIIYPSDFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++L++LE   + I  W  +     + I +N++ + L D    E  + + 
Sbjct: 539 PLFEKSGFICKLDLYILEETCKLISKWIKEGKEV-LRISVNVSRQHLNDKLFLEKYKHIC 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       I L  +ES+ + NPE +  ++  +   G   ++DDFG   S L  L     
Sbjct: 598 NKYNVPTCLIDLELTESIFLENPE-AIDIIEDIHSNGFKCSIDDFGFGYSSLGILKDFKV 656

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S  ++ +   R   +++SII ++K +   + A+ I     ++ L  +GCDYIQ
Sbjct: 657 DIIKLDRSFFVSKNNIDRGKVVIKSIIELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQ 716

Query: 937 DSHVASPLGFNSILKL 952
               + PL  +     
Sbjct: 717 GYVFSKPLLISDFENF 732


>gi|126697775|ref|YP_001086672.1| putative signaling protein [Clostridium difficile 630]
 gi|115249212|emb|CAJ67025.1| putative signaling protein [Clostridium difficile]
          Length = 744

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 180/436 (41%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++K +  I   A+ D++T   N   F   +  ++  S    +    ++ ++I  +K IND
Sbjct: 303 RRKYVNQIENIAYLDSITNGINSTKFSMLVKPLISES---PDSTYMMIAMNIKDFKLIND 359

Query: 582 VLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   G+  L  L   +   + +  + + R   + F +++ +      +      +   
Sbjct: 360 CFGSEKGNMTLKHLYNILYKNIDENEEFVCRHDADLFYLLIKNRPVLEALELL-YKIEAD 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
                   E    +  S+G  +  +       +  +A  A       H+      S    
Sbjct: 419 TNYFNKNRENPYFLRLSVGIYTIENHNEDLITIQDHANTARKSFNKTHQSDFSFYSDIER 478

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I   +  A+EN E ++   P I +   +I G E+L++W + + G I  S+F+
Sbjct: 479 KRLISEKEISNLMEKALENKEFFMCLQPKIDIKSGKISGAESLVRWKNSEKGIIYPSDFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++L++LE   + I  W  +     + I +N++ + L D    E  + + 
Sbjct: 539 PLFEKSGFICKLDLYILEETCKLISKWIKEGKEV-LRISVNVSRQHLNDKLFLEKYKHIC 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       I L  +ES+ + NPE +  ++  +   G   ++DDFG   S L  L     
Sbjct: 598 NKYNVPTCLIDLELTESIFLENPE-AIDIIEDIHSNGFKCSIDDFGFGYSSLGILKDFKV 656

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S  ++ +   R   +++SII ++K +   + A+ I     ++ L  +GCDYIQ
Sbjct: 657 DIIKLDRSFFVSKNNIDRGKVVIKSIIELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQ 716

Query: 937 DSHVASPLGFNSILKL 952
               + PL  +     
Sbjct: 717 GYVFSKPLLISDFENF 732


>gi|291007648|ref|ZP_06565621.1| two component signal transduction response regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 726

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 241/582 (41%), Gaps = 29/582 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + +     + + +   R       +   V   D+    V   P +   LG  S       
Sbjct: 153 LRSKLQADRDLAASEARFGEVFTTTPIGVAICDLTGKFVQVNPALGETLGYRSQDFGSMT 212

Query: 450 RNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            +     H  D               R  RL+   R+  AD +  W  + +  +  ++G 
Sbjct: 213 VH--DLFHPEDAKYLTAAYAELAEGGRTQRLRERRRLLRADGEPAWAYLAVSVLKGADGA 270

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++ +  DI+E     E     A  D +TG+PNRQ F  RL   L     D   R T+
Sbjct: 271 PAHFVTMVEDISELHLLQERFQYQALHDAMTGLPNRQFFRTRLEAALGNLPKD--ARLTL 328

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627
             + +D ++ IND LG  VGD ++ ++ RR+ +L++    ILAR  G  F ++++    +
Sbjct: 329 YHLGLDGFELINDGLGHEVGDGIIKAVARRLEQLIQREEAILARFGGTEFAVLVLESPRT 388

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             + +FA  + + +A PI + E  I  +ASIG     +    ++ ML  A++A+  A+  
Sbjct: 389 PPVHEFAPMINEELAEPIYVGEHGIATSASIGVVQRCAGDGDAANMLWAADVALRRAEAA 448

Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F          +  +   +   +E  E  +VY P+++L D +++ +EA + W+
Sbjct: 449 GKRQWALFDPDRAPDERTQAKLAAVMPGGLELGEFDVVYRPVVQLGDSKLIAIEAELSWE 508

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             ++G +  ++ + +AE   +  ++  +ML      +  W    + PP+ +   ++    
Sbjct: 509 TGEFGRLDHADCLRLAERSGVTLSLRDWMLGSAWEQLARWHRAGHRPPLVVG--LSPNQA 566

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D +L   ++ ++ +     S +++S    V++G+ + +R  +  L ++G+   L  F  
Sbjct: 567 ADPDLVGTIRRVLDEGSLDASWLRVSMPMRVMLGDNDEARDNVRFLDRLGVRTALHGF-- 624

Query: 866 KCSL---LSYLGYIPFDTVKFNGSL-------MTGSTEKRIAI--LRSIIPMAKNIETTI 913
             +    L YL  +P D +             +  S E    +  ++  +P+ ++    +
Sbjct: 625 -HASPGELRYLRDLPVDII----QFADDVVRLVRDSAEDSPEVEAVKRFVPLVRSCGRRL 679

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              D+  E   +    MGC+    +    P+    +  LL +
Sbjct: 680 AVGDVDSEEQARRWHEMGCEVGAGALYGGPVPNVEVPNLLAQ 721


>gi|188588270|ref|YP_001919568.1| putative signaling protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498551|gb|ACD51687.1| putative signaling protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 751

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 201/436 (46%), Gaps = 12/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +  + I   AF D++TG      F   +  +L     + N    ++  DI ++K IND
Sbjct: 306 RNRKEKLIKDIAFVDDITGGKTLTKFKMDIREVL---VENMNSSYALVEFDIVRFKIIND 362

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD +L  ++  +   L + ++  R+  + F ++L  ++ +  I      +  + 
Sbjct: 363 IWGYKTGDFLLKHISDILKNKLLYKEMFCRVRDDLFILLLKYKDENDLIDRI--NVLDNS 420

Query: 642 AMPINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               +   +E+   + S G      ++   ++M+ N   A   +K      +  + +   
Sbjct: 421 MRFFDNGTKEVPNFSLSYGVYVIDGTEEDINKMIDNVAFARETSKSDCNEVIGFYDIGLQ 480

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +  I++ +  A+ N +  L   P   +  E  VG EAL++W++P+ G IS  +F+
Sbjct: 481 SKLIKQKQIEDVMYSALANRQFELYLQPKYDIKLESCVGAEALVRWNNPEKGLISPIDFI 540

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE-LCEGMQAL 817
            + E+   I  +++F+ E +   I  W+       I I +NI+  +L + +   + +  +
Sbjct: 541 PLFEKNGFIVNLDMFIFEEVCSKINEWKKNNIKL-IPISVNISRINLKNVDYFIKNISEI 599

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +K   +P+ I++  +ES +  + +     L RL+ +G S++LDDFGT  S L+ L  +P
Sbjct: 600 FNKYDINPNLIEIEITESAIFNHYDNMLEALLRLKAMGFSISLDDFGTGLSSLNILKDLP 659

Query: 878 FDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K +   +    S++K   ++ +I+ M K ++  +I + +      + L+ +GC+  
Sbjct: 660 IDTIKLDREFLNSKDSSKKGEIVIANIVRMVKELDLNVICEGVETYEQAEFLSEVGCNNA 719

Query: 936 QDSHVASPLGFNSILK 951
           Q    A P+      +
Sbjct: 720 QGYLYARPMPVKVFEE 735


>gi|332140951|ref|YP_004426689.1| sensory box/GGDEF domain/EAL domain protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550973|gb|AEA97691.1| sensory box/GGDEF domain/EAL domain protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 434

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 184/429 (42%), Gaps = 11/429 (2%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +   +L  IPNR +F+D ++     S        ++M++D+ ++  +   LGI VGD  
Sbjct: 1   MSQHTSLATIPNRYAFIDSISKQASRSGA-----ISLMLVDVVRFSDVTTSLGIHVGDRF 55

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +  RI  L      + R+SG+ FGI+  +E+N   +      + +    P++     
Sbjct: 56  LLEIANRIQLLFGQSVYIGRISGDVFGIVFPNESNEGVMRKMFERLVEHFKTPMHYEGTA 115

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--E 709
                ++G       +   +  +  AE A+  AK     +  +   +        +    
Sbjct: 116 FIADFNVGVVCSDKREFEITRFVSRAETALKQAKENKYENYFALTKTDKADTGRSLALKA 175

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A+  +EL L Y P + L   E++G E L++W+HP  G +     +  AE   M+  
Sbjct: 176 DLKRALAQNELELYYQPKVNLATLEVIGAECLLRWNHPLDGVLFPGPLIEAAESYNMMNE 235

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  + LE+  R ++         PI + +NI+   L DN+L   +  L        + I+
Sbjct: 236 LGYWTLEQAFRALVELNAL--KMPIVLSVNISPTQLYDNQLVPTLTMLSETYAMPLTLIE 293

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E V + N    +  L  LR  G+S+++DDFG   S L+Y+  +  D +K + S + 
Sbjct: 294 LELTEDVALSNSLMVKKQLDELRSFGVSVSVDDFGKGYSNLAYIRDLDLDALKVDKSFVM 353

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                    AI+ +   +      +++A+ I     +  L  +G    Q    +  + F 
Sbjct: 354 ELEAHPVNRAIIEAAKVIGHAKGCSVVAEGIETIEQLHILREVGVAQGQGYLFSRAIPFK 413

Query: 948 SILKLLKER 956
           S + L ++ 
Sbjct: 414 SFVALAQQE 422


>gi|317486713|ref|ZP_07945530.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316922096|gb|EFV43365.1| EAL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 739

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/438 (21%), Positives = 186/438 (42%), Gaps = 23/438 (5%)

Query: 524 KSLEGILCNAFQDNLT--GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           K    +   AF D +T     N+  FL     IL       + +  ++  DID +K IN+
Sbjct: 315 KQRAQLEKIAFVDTVTLGDTYNK--FLVDAQGILTQC---PHKKFHIIKFDIDNFKYINN 369

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L  +   I + L   +++AR+  + F I+L +             +   +
Sbjct: 370 FYGFEFGDRILRKINESISQQLNAHELIARIYSDHFVILLENAAE--------GRLNALL 421

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSS 699
           +   ++   EIT+  S G  S T S  + + M+  A  A    K          + +   
Sbjct: 422 S---SIENEEITLYFSAGIYSVTDSTESINLMVDKAGTAARSIKGVLNKKFAYYTNKFEQ 478

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +K  +  A++N E    Y P + +    +VG EAL++W   +   I  +EF+ 
Sbjct: 479 ITIHNEQLKRAVKQALKNDEFIPYYQPKVDINSGILVGGEALVRWKTREGKFIFPNEFIP 538

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+  +I  +++ M E++ + + S+ +Q     + I +N +   L+D++    +     
Sbjct: 539 MCEQTGLIVELDMIMYEKVLKFLKSFLEQGLAC-VPISVNFSRLHLMDSDFLSKIVKKQC 597

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +       I++  +ES +  N +       ++   G ++ +DDFG+  S L+ L  IP D
Sbjct: 598 EYGVPAHLIEIELTESAIFDNIDTIYAFTRKMHANGFAIAMDDFGSGYSSLNMLKDIPID 657

Query: 880 TVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   ++ + +      I  SI  MA+ +   ++ + +    +++ +   GC   Q 
Sbjct: 658 VLKIDKGFLSEAADNNRRNIIFSSIADMARKLNIKVVVEGVEHLENVRLMKECGCSIAQG 717

Query: 938 SHVASPLGFNSILKLLKE 955
            + A P+   S   + KE
Sbjct: 718 YYFAKPMDEESFRNVFKE 735


>gi|167755121|ref|ZP_02427248.1| hypothetical protein CLORAM_00625 [Clostridium ramosum DSM 1402]
 gi|167705171|gb|EDS19750.1| hypothetical protein CLORAM_00625 [Clostridium ramosum DSM 1402]
          Length = 738

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 179/436 (41%), Gaps = 12/436 (2%)

Query: 523 KKSLEGILCNAFQDNLT-GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           KK    +   AF D LT G+ N   F      +++ +        TV+ +DI ++K IN 
Sbjct: 308 KKHKNWLEKIAFTDPLTAGLNN-AGFQLDAQKLVNTA---PPSNYTVIFLDIKQFKLINQ 363

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G+DVL  +   I   +   +++AR   + F I L +E+N   I      +   I
Sbjct: 364 NYGFNKGNDVLKHIYNVIYNNISSNELVARSENDHFFICL-NESNKQIIQTRLDMIIAEI 422

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                   +   +T   G     +     + +   A LA      +         +    
Sbjct: 423 NSF--AKNKASQLTILQGACLIENPNSEINIIQDYARLACRLNSKKSRCTYYDKEILDTM 480

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                + +    +++N + ++   P I + + +I G EAL++W HP+ G I  S+F+ + 
Sbjct: 481 KKEQELNDLFENSIKNKDFHMFLQPKIIISNNKIGGAEALVRWFHPERGTIYPSDFIPLF 540

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I  ++L++ E +   +     +    P  I +N++     DN+  +    +  + 
Sbjct: 541 ERNDNIIKLDLYIFEEVCIFLQDMIAR-GEKPFVISVNVSRVHFKDNDFLKAFARIKEQY 599

Query: 822 LYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
               + I+L  +ES+   N   E  +  + ++ + G   +LDDFG   S L  L     D
Sbjct: 600 RIPNNLIELELTESIFFDNQQIESIKDTIHQIHQYGFLCSLDDFGAGFSSLGLLKDFKVD 659

Query: 880 TVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K +       + +K   I+ + I +A  +  +++A+ I     ++ L  + C+ +Q  
Sbjct: 660 GIKMDKKFFDDISSQKSKDIIANFIELADKLNISLVAEGIETLEQLEFLKSVHCNMVQGY 719

Query: 939 HVASPLGFNSILKLLK 954
             + PL  +  +  LK
Sbjct: 720 IYSKPLPVDEFILWLK 735


>gi|237798514|ref|ZP_04586975.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021366|gb|EGI01423.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 607

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 195/424 (45%), Gaps = 11/424 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D  TG+ NR    + +   L  ++T D     V +I       I   LG +   D++ 
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQAL--ASTLDYQLIAVDMITSAFLNDIVKALGYSFSQDLVT 225

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++  R+  LL     L ++S  RFG +L  +     +      + +    P+      + 
Sbjct: 226 AIKGRLEALLPPTCPLYKVSPTRFGFLLPGDQVPDYLLRI---IIEDFQTPVECRGIPVQ 282

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLC 712
           +   +G  + +       + ++    A   A+ R  G  +      + +     +   L 
Sbjct: 283 MQVGLGVVTLSRDAAEEQDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLSSLT 342

Query: 713 LA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            A   +++L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++ ++
Sbjct: 343 TAVHADNQLRLVYQPRIDLASGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMRPLS 402

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L++L+        W+ +       I IN++  DL      + M  L+S+    P+R +L 
Sbjct: 403 LWVLKTAIEQAAQWQQKGFD--FRIAINVSPADLSGPAFTDRMIRLLSQHKIDPTRFELE 460

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           F+E  +M NP   R  L R+R++G+ + +DDFGT  S  SYL  +P  TVK + SL+   
Sbjct: 461 FTEGALMQNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWSYLRQLPATTVKLDQSLIRNL 520

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  +++
Sbjct: 521 ASDKTDQRLVKALIGLAKKLGYCVVAEGIETDDIRRLVKQWGCDEGQGYLIAKPMEADAL 580

Query: 950 LKLL 953
           LK +
Sbjct: 581 LKWI 584


>gi|170721523|ref|YP_001749211.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169759526|gb|ACA72842.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 376

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 7/373 (1%)

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  L +R+   L+  D  ARL G+ + +++       ++      +   +  P  
Sbjct: 2   AGDQVLCELAQRLTS-LQGIDTTARLGGDEYLMLVR-ATTRKQLEQLLRDLDSRLREPWL 59

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDR 704
           +    + V  SIG A       +  ++ K A++A+  AK  G      +  +        
Sbjct: 60  VHNCLLEVRTSIGIACHPDHGTSFDDLFKAADIALNQAKKCGRARHTFYTPAMGERALKS 119

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++ +L +A+ N E  L Y P + L   E+VG EAL++W HP  G I   EF+  AE  
Sbjct: 120 LQLQVELRVALHNDEFELHYQPQVNLDSGEVVGAEALLRWRHPSRGMIYPGEFIAEAESS 179

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  I  ++L       ++W+       + + +N ++ +    +  + +   +S +   
Sbjct: 180 GLIVPIGRWLLTTACEQAVAWQRMGLGT-LIVAVNCSAIEFKQGDYVDSVALALSTSGLE 238

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S ++L  +ES+++ + ER      RL+ +G+ L +DDFGT  S ++YL ++  D +K +
Sbjct: 239 SSLLELELTESILIEDTERMIACFRRLKAMGVRLAIDDFGTGYSSMAYLKHLTIDRLKID 298

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +          AI+ +++ +A N+   I+A+ +  +  +  L+RMGCD  Q  + + 
Sbjct: 299 RSFVQNLADNADDRAIVGTMVTLAHNLNLQIVAEGVESDNVLPILSRMGCDEAQGYYFSR 358

Query: 943 PLGFNSILKLLKE 955
           P+        +  
Sbjct: 359 PVPVKEFELFMSS 371


>gi|325983232|ref|YP_004295634.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
 gi|325532751|gb|ADZ27472.1| diguanylate cyclase/phosphodiesterase [Nitrosomonas sp. AL212]
          Length = 432

 Score =  336 bits (861), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/417 (22%), Positives = 189/417 (45%), Gaps = 6/417 (1%)

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           Q FL + +  L            V++I+ ++  +++ +LG  + D+ L  + +++ + L 
Sbjct: 7   QHFLQQASQRLRDECQLGRRN-AVLIINFERLIELDGILGFTIVDNTLQQIAQQLRDALN 65

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             D++      +   +L+           A  + + +  P  L  + I +   +G A   
Sbjct: 66  PDDLVGITGRYQICCLLVDLLTDAHAMLAAHKILRILTPPFVLDRKNIILAPRLGVAVNN 125

Query: 665 SSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
            S     +++ NA  A+  AK  +  + +    +      ++ +  DL  A+EN  LYL 
Sbjct: 126 ESGDELDQLMCNASAAVRQAKLEQLPSKLFHAEMQDPLLFQIDLWSDLGNAIENGGLYLG 185

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P I +   +I   EAL++W HP  G+I + + + +AE   ++  + L++     R+  
Sbjct: 186 YQPQIDIASGKIKSTEALLRWHHPHHGSIRTDKLIQVAEGTPLMSKLTLWVFHTALRECS 245

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            +R         + IN ++ DL D EL E +   +S     P  I +  +E+ VM N   
Sbjct: 246 EYRKAGLNAG--VSINFSADDLRDPELTELVLQGLSLWNVPPEDITIELTETAVMDNQAG 303

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           +   L +L+ +G+ L +DDFGT  S ++ +  +P D VK +   +       K   I+ S
Sbjct: 304 TLDTLCQLKDMGLKLAMDDFGTGYSSMARMLDLPLDEVKIDMVFVKHMTTHHKHDRIVDS 363

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +I +A  +  +++A+ +      + L  +GCD IQ   +   +    ++K + ++FP
Sbjct: 364 MINLAHRLNLSVVAEGVEDVATYERLRALGCDIIQGYLIGKAMPLPELIKTVNDQFP 420


>gi|307942171|ref|ZP_07657522.1| putative response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307774457|gb|EFO33667.1| putative response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 746

 Score =  336 bits (861), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 193/447 (43%), Gaps = 12/447 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+    E I   AF+D +TG+ +   F++R   +          + TV+++DI +Y+ I 
Sbjct: 306 EKTALSEHIQRLAFEDRVTGLNSYTGFIERFRRL-----ASTGRQMTVVLLDIQRYRMIE 360

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + +G   G D L  +  R+        ++AR   + F ++L+   N   + D    +   
Sbjct: 361 NGIGAEQGGDFLKKVGMRLKSGFPTAFVIARKEVDEF-LLLMDLVNPKALPDLVDTLEAL 419

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              PI + +    +   +G A+         ++ + A +A+   + RG  +   F     
Sbjct: 420 FDEPIAVGDSVFNIRMRMGIANSGDHGNDPEQLTRYASIALNDLRQRGIGNYSVFTPVMQ 479

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ +   L      ++  L Y PI+    EEI   EAL+++       +++   +
Sbjct: 480 ESAFERLRLTSLLTGTAGKTKFLLHYQPILHADTEEIHSCEALMRFRTSGGDFLNTQRMI 539

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE   MI  +  +M++    + ++         + + +N++ K +  + +   ++  +
Sbjct: 540 EAAEASGMIIDVGGWMIQNATAEFMNMP--FRSNDMHLNLNLSPKQVQSSRIYNDVERAL 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T    S+I    +E + + N   +   L  +++ G  + +DDFGT  S  SYL  +P 
Sbjct: 598 DVTGMQMSQITFEVTEGIFVNNDPETISFLTWIQENGGRVVIDDFGTGYSSFSYLRKLPV 657

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +      E  +A++RSI+ +A+ +   + A+ +        L  + C Y+Q
Sbjct: 658 DGIKVDRAFIMHMDQDEDALAVVRSIVAVAQALGLEVTAEGVETVAQRNILRDLNCTYLQ 717

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
               + P+  +++   L+  F +  +T
Sbjct: 718 GYLYSRPVPGSNLPLFLQNGFCMDAST 744


>gi|89100924|ref|ZP_01173772.1| probable signalling protein [Bacillus sp. NRRL B-14911]
 gi|89084370|gb|EAR63523.1| probable signalling protein [Bacillus sp. NRRL B-14911]
          Length = 681

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 113/456 (24%), Positives = 209/456 (45%), Gaps = 17/456 (3%)

Query: 507 GDILRYIGIANDITEQKKSLEGI--LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           G I   I I   I+     L+       ++ D LT +PN++ F   L          +  
Sbjct: 231 GVITAGILILLAISGLTSLLDRYVEYRLSYFDPLTKLPNQRQFEQDLK---------NGG 281

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  + +I I   +K N   G + GD+++ S+   I  LL       R+ GNRF +    E
Sbjct: 282 KGCLAIIHIHDLEKWNSGFGYSFGDEIIQSVHGGIKGLLPLEMKAYRIEGNRFAMFASGE 341

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +   K+      +      P+ + ++ + +   +   S  S K    E+  +    + H+
Sbjct: 342 HEYEKLKAALHRIMAVFTQPLIIGKQRLVIDM-VCAVSSASDKQPHKELFSSTMAVLLHS 400

Query: 685 KHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             R  + V  +  +         + +D+ LA+EN +L+LVY P I     E+ G+EAL++
Sbjct: 401 TTRYKHEVIEYNPAVHTYSFEKELAKDITLAMENDDLFLVYQPKISSSTWEVSGMEALLR 460

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP+ G IS   F+ I EE   +  +  +++E++   +  WR +       I INI   
Sbjct: 461 WNHPRHGMISPGVFIPILEESGKLFKVTDWVIEKVCLQLSHWRKEGAALH-QISINIPGP 519

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L   +L   +   + K   S   ++L  +E+ V+ + E +   + + R++G+S+ LDDF
Sbjct: 520 YLTSAKLLNVLIDSLEKYDISSHLLELEITETSVIHDIENAIQAVAQFREMGLSVALDDF 579

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S LSYL  IP  T+K + S + G   +EK  AILR+II ++ ++   ++ +    +
Sbjct: 580 GTGVSSLSYLKRIPISTIKIDKSFVDGVPMSEKDSAILRAIISLSCSLNLKVVIEGAENQ 639

Query: 922 IDIKELTRM-GCDYIQDSHVASPLGFNSILKLLKER 956
             I  +  +    ++Q  + + PL    +   ++ R
Sbjct: 640 DQIDFIGSLSESPHVQGYYFSRPLKEEELQDWIQNR 675


>gi|291086384|ref|ZP_06355651.2| protein YhjK [Citrobacter youngae ATCC 29220]
 gi|291068082|gb|EFE06191.1| protein YhjK [Citrobacter youngae ATCC 29220]
          Length = 657

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 191/439 (43%), Gaps = 14/439 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E    ++ +  ++ +PN+   +  L  ++    T       +M++  +  +    V
Sbjct: 221 KRHSEEQSDHSMRFPVSELPNKSFLMGLLEQVVTRQQTT-----ALMIVTCETLRDTAGV 275

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           L     + +L++L  ++  +L    +L ++SG  F II                +   + 
Sbjct: 276 LTETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQVLTIVN 335

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             + +   ++    +IG A +    +T+ ++ + A  A+  ++H+G N ++ F       
Sbjct: 336 ERLPIQGIQLRPNCNIGVAMFYGD-LTAEQLYRRALSAVLTSRHKGKNQIQFFDPQQMEE 394

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  +  + D+  A++N +  L   P + +   +++  EAL++   P          +  
Sbjct: 395 AQQRLTQENDILTAMDNQQFALWMQPQVEMSSGKVLSAEALLRMQQPDGSWELPEGLIDR 454

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   +  L+++
Sbjct: 455 IESCGLMVTVGYWVLEETCRQLSAWQERGLM--LPLSVNLSALQLMHPNMVSDLLELLTR 512

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IP 877
               P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +P
Sbjct: 513 YRIKPGTLILEVTESRHIDDPNAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSLP 572

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            D +K +   + G   +  +++ +II +A ++   +IA+ +  +   + L++ G +  Q 
Sbjct: 573 VDVLKIDKMFVDGV-PEDCSMISAIIQLAHSLNLQMIAEGVETQAQREWLSQAGVEVAQG 631

Query: 938 SHVASPLGFNSILKLLKER 956
              A P+      +    +
Sbjct: 632 FLFARPVPAKIFEERYLSQ 650


>gi|225571075|ref|ZP_03780092.1| hypothetical protein CLOHYLEM_07174 [Clostridium hylemonae DSM
           15053]
 gi|225160156|gb|EEG72775.1| hypothetical protein CLOHYLEM_07174 [Clostridium hylemonae DSM
           15053]
          Length = 904

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 196/437 (44%), Gaps = 13/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A+ D +  + NR  +      ++  S        ++  +DI  + + N++ 
Sbjct: 477 RYRKKVEQLAYFDPVFNVGNRPKYFRDTEMLISYS---PKRPFSLFCVDICSFSQYNELF 533

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
              VGD++L  + RR+         L R++G+ F  I +      K   FA  +++ +  
Sbjct: 534 SADVGDEILHEMIRRLSRPF--GSYLYRINGDVFLGISL---TKEKTDVFAARLQQMLTA 588

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG-NHVESFRVSSFRS 702
           P+      I +   +    + +   T   +L+  + AM  +K       + +  +     
Sbjct: 589 PVMAGNLSIPLQIRLVACRYPAHGSTPGILLERLQSAMSFSKTTARSTVIYNDALDEMLR 648

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I   L  A++   L + Y P++ L   +   +EAL++    + G   + + + +AE
Sbjct: 649 TEAHILHRLSDAIQQKTLEIWYQPLMHLESGQYKAVEALVRLPDGEGGYFPAGQVISLAE 708

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              M++A+  ++L      +  W ++  +    + IN++ + LL     E +  LIS   
Sbjct: 709 RNAMVEALGDYVLANACSFMREWGEELGVQ--RMGINLSVQQLLVGNSAEHLLQLISAAN 766

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P RI L  +ES+++ + + +   L +LRK GI + LDDFG   S L+YL  +P D +K
Sbjct: 767 VEPGRITLEITESILIQSIDHAAETLEKLRKAGIHIALDDFGVGYSSLNYLSNLPVDIIK 826

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL       EK+ A+LRSI+ M+   + +++A+ +    + K +   G  YIQ  + 
Sbjct: 827 IDRSLTQQILTNEKQYALLRSIVDMSVINDLSVVAEGVESGAEQKMIASAGVQYIQGYYY 886

Query: 941 ASPLGFNSILKLLKERF 957
           A P+    ++  LK R 
Sbjct: 887 ARPMPGEELIVSLKGRQ 903



 Score = 45.3 bits (106), Expect = 0.054,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++ +++ +      D  TG+ N++ F   L   L     D++    +    ++ Y +   
Sbjct: 279 RRHAIKQLRTM---DGATGLYNQKGFTAALDCWLS----DESSPVMLFYFSMEGYSQAAR 331

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           ++G       L S+  R+ E ++ P + A L    F I L    N L+  +FA  +   +
Sbjct: 332 LIGTKQEAVFLRSIPGRLKEYIRSPFLAAYLGSGNFLIALREGMNKLQQEEFAKGLSLEL 391

Query: 642 AMPINLLEREITVTASIGFASW-TSSKITSSEM--LKNAELAMYHAKHRGGNHVESF--- 695
            + + + + +  V A   +      +   + EM  L +A  A    +       E     
Sbjct: 392 LLKVRVRDEKNFVMARYKYTRCKNGTGRAAEEMESLIHAYYAEVMQESPVRMMTEKCRQL 451

Query: 696 --------RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW-DH 746
                          +   + +      +  E    + P+  + +      +  +     
Sbjct: 452 IEGNNDVIFDEYTDFEMTELSKTFNRYRKKVEQLAYFDPVFNVGNRPKYFRDTEMLISYS 511

Query: 747 PKWGNISSSEFMLIAEELC--MIKAINLFMLERIARDIIS 784
           PK         +    +        +   +L  + R +  
Sbjct: 512 PKRPFSLFCVDICSFSQYNELFSADVGDEILHEMIRRLSR 551


>gi|160937598|ref|ZP_02084959.1| hypothetical protein CLOBOL_02489 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439667|gb|EDP17417.1| hypothetical protein CLOBOL_02489 [Clostridium bolteae ATCC
           BAA-613]
          Length = 772

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 190/458 (41%), Gaps = 19/458 (4%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L    +       K+ LE     A++D LTG  N  +F  R   +   S        +++
Sbjct: 325 LFLFAVFRFYNAHKRQLE---LIAYRDPLTGGLNNAAFQARYREL---SKNMTPCTYSIV 378

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISENNS 627
           ++++  +K +N+  GI +G+ +L  + + + + L+    +  AR   + F + L  E + 
Sbjct: 379 LLNVRGFKMVNEQFGIRIGNQILSYIYKVLKQHLREEQDEFAARGESDHFFLCL-KEYSP 437

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             I      M   I    +    +++++   G           + +  +A +A+      
Sbjct: 438 GAIQYRLNDMIHDINNFHDTELPDLSLSFKQGACLADDPYQEITLLQDHARIALQSCGTD 497

Query: 688 GGNHVESFRVSSFRSDRVMIKEDL----CLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                            + I+++L      ++EN    +   P I L    + G EAL++
Sbjct: 498 --LCHSCCFYDESLIRTLKIEQELNALFEDSIENRYFQIYLQPKIGLRSGRLEGAEALVR 555

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP+ G I  S+F+ + E    I  ++L++   +   I  WR +   P I + +N++ +
Sbjct: 556 WNHPQKGIIYPSDFIPLFENNGKICRLDLYVFTEVCAAIDRWRQEGL-PLIPVSVNLSRQ 614

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLD 861
              +    +    + S        ++   +ES+   N   +  R  +  + ++G   +LD
Sbjct: 615 HFRNPNFLDTFAGIASSFKIPDKILEFELTESIFFDNQQIKTVRETIQEMHRMGFLCSLD 674

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYG 920
           DFG+  S L  L     DT+K + S     + ++   ++  +I ++++++   +A+ I  
Sbjct: 675 DFGSGFSSLGLLKEFDVDTLKLDRSFFLNMSGQKAKDVISCLIDLSRHLKVKTVAEGIES 734

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
              +  L  MGCD IQ    ++P+  N   K   +  P
Sbjct: 735 TEQVDFLRSMGCDMIQGYVFSAPIPLNEFEKRYLQDQP 772


>gi|239627292|ref|ZP_04670323.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517438|gb|EEQ57304.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 749

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 195/438 (44%), Gaps = 10/438 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + ++  A++D+LTG+ N   F   +   ++    +D     +   D+ K+K IND+L
Sbjct: 307 RTQKMLMNLAYRDSLTGLRNFDGFKLDVKPFMEK---NDLSSYVLWYGDLKKFKFINDIL 363

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  ++  + EL     I+ R+S + F  I     N   +      +   I  
Sbjct: 364 GYEEGDKILRLISEYLQELEDKECIVCRISADNFAGI-AKCGNQEGLNIKFQEVLDHIKN 422

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFR 701
                +  I ++  I   S    K++   ++  A +A   AK + G++   +       +
Sbjct: 423 AGVEGQAFIELSVGIYRLSPGDEKLSMDVLMNYANMAHKIAKEKPGSNFALYDSGLRMRQ 482

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEFMLI 760
            +  +++ +   A+E  E  +   P + + +   + G EAL++W  P  G +    F+ +
Sbjct: 483 IEDSILESEAEKAIEAGEFKVYMQPKVNIQNNNCLSGAEALVRWLSPSRGLVPPDRFISL 542

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+   I  ++ +M  ++ R   ++ D     P+ I +N++   LL  +  +        
Sbjct: 543 FEKSDRIVMLDRYMFGQVCRWYRNYLD-GGGRPLSIAVNVSKVGLLRKDFIQYYSETKRC 601

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  ++L F+E V++ + +    ++ +L+  G + +LDDFG+  S L+ L  +P D 
Sbjct: 602 FGIPDGYLELEFTEGVLLNDTDMFSDIVRQLQSNGFTCSLDDFGSGYSSLNLLKNLPIDV 661

Query: 881 VKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +      S +  +   ++ + I MAK ++   IA+ +     ++ L   GCD +Q  
Sbjct: 662 LKLDIMFFHKSRDMGRERIVISNFIHMAKELKIKTIAEGVEDTDSVEFLKNCGCDVVQGY 721

Query: 939 HVASPLGFNSILKLLKER 956
               P+      +L+KE+
Sbjct: 722 TFFKPMPLEEFDRLVKEQ 739


>gi|317062525|ref|ZP_07927010.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688201|gb|EFS25036.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 526

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 179/449 (39%), Gaps = 10/449 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++ +I  + + +  +K  E +    ++D LTG  N + F      ++     +   +  +
Sbjct: 69  LVVFIMQSKNQSSLEKMNEKLKDMIYKDELTGDGNLKKFKLDAERLI---KENPETKFAI 125

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D + +K  NDVLG   GD +L    + + E +   +   R++ +RF   +    +  
Sbjct: 126 FYLDFENFKYCNDVLGYKFGDYILKEYNKFLKEDIGDKEAYGRVTADRFVA-MRKYKDKS 184

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKH 686
           ++ +    + + +   +             G              E++  A  A    K 
Sbjct: 185 ELIERQKNVDEKLKEVVKRSNERYNAFIYYGICCLEDINEKIEVTELIDRANFAQKTIKG 244

Query: 687 R-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           +       +  +     +   I++++  A+ N E  + + P I L   +I   EAL++W 
Sbjct: 245 QVINFAFYNKSIRDKMWEENYIRDNIHKAIANEEFIIYFQPKIELKGNKIENAEALVRWR 304

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +     +    F+ + E+  +I  ++ ++ E+  + I    D+     + I IN++    
Sbjct: 305 NELGNLVPPGLFIPVLEKNLLISVLDQYVFEKTCQWIRKQMDEFKRL-VPISINVSKMQF 363

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +       +  K       + + F+ES +  + +R + ++  L + G    +DDFG 
Sbjct: 364 YSLDFIPVYSKIKRKYNIPDEILIIEFTESAIFNDIKRVKEIIKDLHQNGFLCAIDDFGN 423

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+ L  +  D +K +      S +K     I++ II +AKN+    +A+ I  +  
Sbjct: 424 GYSSLNALKDMKVDILKMDSVFFNDSEDKEREKIIIKGIIQLAKNLNMKTVAEGIEEQEQ 483

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  L   GCD IQ      P+      KL
Sbjct: 484 VNFLREAGCDRIQGYVFYKPMPIEEFEKL 512


>gi|255099368|ref|ZP_05328345.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 744

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 179/436 (41%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++K +  I   A+ D++T   N   F   +  ++  S    +    ++ ++I  +K IND
Sbjct: 303 RRKYVNQIENIAYLDSITNGINSTKFSMLVKPLISES---PDSTYMMIAMNIKDFKLIND 359

Query: 582 VLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   G+  L  L   +   + +  + + R   + F +++ +      +      +   
Sbjct: 360 CFGSEKGNMTLKHLYNILYKNIDENEEFVCRHDADLFYLLIKNRPVLEALELL-YKIEAD 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
                   E    +  S+G  +  +       +  +A  A       H+      S    
Sbjct: 419 TNYFNKNRENPYFLRLSVGIYTIENHNEDLITIQDHANTARKSFNKTHQSDFSFYSDIER 478

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I   +  A+EN E ++   P I +   +I G E+L++W + + G I  S+F+
Sbjct: 479 KRLISEKEISNLMEKALENKEFFMCLQPKIDIKSGKISGAESLVRWKNSEKGIIYPSDFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++L++LE   + I  W  +     + I +N++ + L D    E  + + 
Sbjct: 539 PLFEKSGFICKLDLYILEETCKLISKWIKEGKEV-LRISVNVSRQHLNDKLFLEKYKHIC 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       I L  +ES+ + N E +  ++  +   G   ++DDFG   S L  L     
Sbjct: 598 NKYNVPTCLIDLELTESIFLENLE-AIDIIEDIHSNGFKCSIDDFGFGYSSLGILKDFKV 656

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S  ++ +   R   +++SII ++K +   + A+ I     ++ L  +GCDYIQ
Sbjct: 657 DIIKLDRSFFVSKNNIDRGKVVIKSIIELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQ 716

Query: 937 DSHVASPLGFNSILKL 952
               + PL  +     
Sbjct: 717 GYVFSKPLLISDFENF 732


>gi|254503963|ref|ZP_05116114.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222440034|gb|EEE46713.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 747

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 192/435 (44%), Gaps = 12/435 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            LE I   A+ D +TG+     FL+          T    +  V+  DI +++ I D +G
Sbjct: 312 LLEHIRNLAYVDRMTGLSTFSGFLEAF-----YRNTLTASKLLVVHADIQRFRVIVDGIG 366

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                 VL     R+         +AR   + F I+L   ++   + D    + ++   P
Sbjct: 367 DEKASGVLRKTGHRLSRTFPDALSIARKERDEFLILLKGNSD-DDVQDVVARVEEAFQEP 425

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRS 702
           I L + ++T+   +GFA  +     + ++ + A +A+   +    +    F   +     
Sbjct: 426 IRLDDTQLTLRPRLGFAMSSDPSNAAEDIARQASIALNDVRQNANSSYAVFNPLMQEAAF 485

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ +   L    E +E  + Y PI+   DE I   EAL+++  P    ++++  +  AE
Sbjct: 486 ERLRLASLLTGGQEQTEFSVHYQPIMSAKDEGIASFEALMRFRTPGGAFLNTASMIEAAE 545

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  I  +M      +  +++       + + +N++ + +  + + + ++   +   
Sbjct: 546 TSGLITEIGAWMFRTSFSEFSNFQ--GISDQVRLNVNLSPRQVHASRIYKDIEDAATNAE 603

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S +R+    +E + + N + +  LL  LRK G ++ +DDFGT  S LSYL  +P D +K
Sbjct: 604 LSLNRLVFEVTEGLFLSNDQVTLDLLTWLRKRGATVVIDDFGTGYSSLSYLRKLPVDGIK 663

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +         +A+++S++ +AK ++ ++ A+ +      K +  + C Y+Q    
Sbjct: 664 IDRSFIMHMDQDPDALAVVKSLLAVAKALDLSVTAEGVETVAQRKIMQDLNCSYLQGYLY 723

Query: 941 ASPLGFNSILKLLKE 955
           + PL    +   + +
Sbjct: 724 SKPLSAADLTDFINK 738


>gi|315185513|gb|EFU19283.1| diguanylate cyclase/phosphodiesterase [Spirochaeta thermophila DSM
           6578]
          Length = 530

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 105/454 (23%), Positives = 195/454 (42%), Gaps = 23/454 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKI 579
           + K++ E          +TG+PN       L  IL  S   D  +  + ++ +D+ Y  +
Sbjct: 69  KHKRAKEIAEYKLSIHPVTGLPNHYKMSQDLPFILRKSQ--DGHQVALFIVKLDRSYNML 126

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +  L   + + +L     RI  L+   + L     + F ++  +     +I   A  + +
Sbjct: 127 SKTLKPTMTEWILYQTGMRIAHLVGKENHLYHTREDEFIVVTTTLTTEEEILALAREISQ 186

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
           ++  P       I++ + IG A +         +L NA++AM +A  +     +    + 
Sbjct: 187 TVRRPHIFSGYHISIGSYIGIALYPDHGFNKHTLLHNADIAMEYAMEQNTPFEIFKEELR 246

Query: 699 SFRSDRVMIKEDLCLAVE-------NSELYLVYHPI--------IRLMDEEIVGLEALIQ 743
               +R+ +++ L  ++E         +  L + PI         R     I   EALI+
Sbjct: 247 ERVVERMDLQQFLIKSLEAQAILEIKKQFDLFFQPILTLEPAGEKRWRITRIDA-EALIR 305

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP  G +  ++F+ +AEE  +I  +  ++L   A  +  W    +  P+ + INI+  
Sbjct: 306 WHHPTKGLLLPNKFIPVAEETGVIMLLGTWVLYTAADTLRDWEILESRKPL-VSINISPV 364

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              +  L E +  ++       S + L  +E+VVM +P  S   + R+R+ GI   LDDF
Sbjct: 365 QFANTNLEESIAKVLESREIDTSHLMLELTENVVMQDPMESIKKMQRIREYGIKFALDDF 424

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  S L+YL   P   +K + +    + E     AI+RS+I +A+ +   +IA+ +  E
Sbjct: 425 GTGYSSLNYLKSFPISYLKLDKTFFKDTPENAYDRAIVRSVITLARELSLGVIAEGVETE 484

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              + L   GC  IQ    + P    S L  ++ 
Sbjct: 485 AQCEFLLEEGCTTIQGFLFSRPRDSESFLHFVQN 518


>gi|285017998|ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas albilineans GPE PC73]
 gi|283473216|emb|CBA15721.1| hypothetical protein XALc_1211 [Xanthomonas albilineans]
          Length = 595

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 97/444 (21%), Positives = 197/444 (44%), Gaps = 12/444 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA-TDDNLRPTVMVIDID 574
             DI   +          F D LT +PNR  F + LT  L L      N    V V    
Sbjct: 153 LRDILMIRIDALRNAG--FIDPLTQLPNRLRFNEDLTMWLSLQGTQQHNTAVAVDVCGTK 210

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++++   LG    +  L+S   R+ + L     L R+    F  ++   ++  K+A + 
Sbjct: 211 YFREMVKALGWEYAEGYLLSSRDRLVQAL-DGIPLYRIDTTTFVFVIEG-SDEDKLAQWC 268

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVE 693
             +  +  + I         T S+G A +    ++++  L++   A+  A+ RG    + 
Sbjct: 269 DRVCDAFTLAIEHQGIPHVATPSLG-AVYLDGGLSANHTLRSLTTAVDMARQRGLRWSLY 327

Query: 694 SFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                + +     I   L  A   + +L L Y P + +      G+EAL++W+HP  G +
Sbjct: 328 ELSHDANQRSAFRILAALPEALSAHGQLSLHYQPRVSMHSGACTGVEALLRWEHPLLGAV 387

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           + + F+ +AE+  ++  I  ++L+        W+ + +     + +N+++ DL   +   
Sbjct: 388 APNNFIPLAEKTALMPQITAWVLQTGIAQAALWQQRGHR--FAVSLNVSAVDLEQADFIT 445

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +++L+++   +P  I++ F+ES ++ +P+R    L ++  +G+ + +DDFGT  S L Y
Sbjct: 446 NLRSLLAQHALAPGAIEIEFTESAMIRHPQRVAEQLQQISALGVKIAIDDFGTGYSNLGY 505

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  IP   +K + S +     +     ++ ++I +  +    ++A+ I  E   + L   
Sbjct: 506 LKSIPAHALKIDQSFIRTLPASRSDSVLVPAMIRLGHDFGQQVVAEGIESETVYQMLRDW 565

Query: 931 GCDYIQDSHVASPLGFNSILKLLK 954
           GCD  Q   +A P+   ++   L 
Sbjct: 566 GCDEGQGYWIAKPMSAAALDAWLA 589


>gi|253579337|ref|ZP_04856607.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849435|gb|EES77395.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 575

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 178/422 (42%), Gaps = 19/422 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+  RQ+F     + L    T    R  +++ DI  +K IN   G  VGD++L  
Sbjct: 163 HDELTGVYTRQAFFYHAKSFL---KTRPGERFHLVIADIRDFKLINSSYGEKVGDEILCY 219

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSIAMPINLLEREI 652
           L     ++L    +++R   ++F  +   + +     +      + +   +P        
Sbjct: 220 LAGAYTKML-KTGLVSRYGSDQFVCMTCDDCDLSLETVTKIEEEIAEHAPVP-------- 270

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKED 710
            +    G        +  S +     +A+   +     ++  +  ++   +    +++  
Sbjct: 271 NLMVKYGVYQDIDKSLPVSVICDRGFMAIRSIRDNYECNIAYYTEKMKQKQMQDRLLENR 330

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A++N E    + P   +  E I G E+L++W +P    +   +F+ + E+  +I  +
Sbjct: 331 FESAIKNKEFVAYFQPKYDVKTERITGAESLVRWINPDGSMVMPGDFIPLYEKDGLIVKL 390

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++   +         +     I I +N++   +  +++ E    ++ +     S + +
Sbjct: 391 DEYIFRYVCEFQRELMKK-GQELIPISVNLSRTSIHHSDIVERYMKIVEENGIPFSCVPV 449

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+  + N    R    +L   G +L +DDFG+  S L  L  +PF+T+K + SL+  
Sbjct: 450 ELTETATLNNV-MIRDFTEKLVNAGFALHMDDFGSGYSSLITLSELPFNTLKIDKSLVDC 508

Query: 891 STEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +++   +++ +I +A  +   ++A+ +     ++ L  M CD IQ  + + PL     
Sbjct: 509 IHQQKGRMVVQQVIILAHGLGMKVVAEGVETADQLELLKEMECDNIQGFYYSRPLPKAEF 568

Query: 950 LK 951
           +K
Sbjct: 569 VK 570


>gi|257468244|ref|ZP_05632340.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
          Length = 624

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 179/449 (39%), Gaps = 10/449 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++ +I  + + +  +K  E +    ++D LTG  N + F      ++     +   +  +
Sbjct: 167 LVVFIMQSKNQSSLEKMNEKLKDMIYKDELTGDGNLKKFKLDAERLI---KENPETKFAI 223

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             +D + +K  NDVLG   GD +L    + + E +   +   R++ +RF   +    +  
Sbjct: 224 FYLDFENFKYCNDVLGYKFGDYILKEYNKFLKEDIGDKEAYGRVTADRFVA-MRKYKDKS 282

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKH 686
           ++ +    + + +   +             G              E++  A  A    K 
Sbjct: 283 ELIERQKNVDEKLKEVVKRSNERYNAFIYYGICCLEDINEKIEVTELIDRANFAQKTIKG 342

Query: 687 R-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           +       +  +     +   I++++  A+ N E  + + P I L   +I   EAL++W 
Sbjct: 343 QVINFAFYNKSIRDKMWEENYIRDNIHKAIANEEFIIYFQPKIELKGNKIENAEALVRWR 402

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           +     +    F+ + E+  +I  ++ ++ E+  + I    D+     + I IN++    
Sbjct: 403 NELGNLVPPGLFIPVLEKNLLISVLDQYVFEKTCQWIRKQMDEFKRL-VPISINVSKMQF 461

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              +       +  K       + + F+ES +  + +R + ++  L + G    +DDFG 
Sbjct: 462 YSLDFIPVYSKIKRKYNIPDEILIIEFTESAIFNDIKRVKEIIKDLHQNGFLCAIDDFGN 521

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+ L  +  D +K +      S +K     I++ II +AKN+    +A+ I  +  
Sbjct: 522 GYSSLNALKDMKVDILKMDSVFFNDSEDKEREKIIIKGIIQLAKNLNMKTVAEGIEEQEQ 581

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  L   GCD IQ      P+      KL
Sbjct: 582 VNFLREAGCDRIQGYVFYKPMPIEEFEKL 610


>gi|330982451|gb|EGH80554.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 799

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 202/405 (49%), Gaps = 12/405 (2%)

Query: 516 ANDIT-EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D T E  ++   +      D+LTG+PNR     RL        ++   +  VM ID+D
Sbjct: 400 VRDRTRELDQANARLQHENSHDSLTGLPNRSHLQHRLRQAWQDFCSNGQ-QVIVMFIDLD 458

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K IND LG   GD +LV    R+   ++  D+LARL G+ F  +L  +       + A
Sbjct: 459 RFKMINDSLGHHCGDILLVQAAERLRSCMRERDLLARLGGDEFA-VLSIDTPLQTGTEIA 517

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +  +   P  + +  +  + SIG     S      +++L++A+ AMY  K+ G +   
Sbjct: 518 QRILTAFEQPFVIDDHTVFSSCSIGVVGADSRFHQEPADLLRDADTAMYRVKNGGRDSFA 577

Query: 694 SFRVSSFRSDRVMIKED--LCLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            F  +  R     ++++  L  A++   +L   + P+I +   +++  EALI+W  P   
Sbjct: 578 VFNQALRREVSDQVEQEGALRTALKRTDQLIPYFQPVICVNSGKLLAFEALIRWRMPDGR 637

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +    F+   E L +I  ++L+ML+R+   +    + ++ PP  + +N +S  +     
Sbjct: 638 IVGPESFLPALEGLRLIGRLDLYMLKRVISILAQ-PENSHWPP--VHVNCSSYSITRPAF 694

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + AL+++   +P R+ L  +E  ++ +PE++RL +  L + G+S+ LDDFG   S L
Sbjct: 695 AAEVLALLAEQNVAPERLCLELTEGALVVDPEQARLSMKLLAEQGMSVMLDDFGAGFSSL 754

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTI 913
           SY+    F  +K + S + G T   +  AI+R+I+ MA++++ T+
Sbjct: 755 SYVHQYHFSGLKIDKSFIFGLTSSVRSRAIVRAIVRMAESLDLTV 799


>gi|254973865|ref|ZP_05270337.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255091250|ref|ZP_05320728.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255312909|ref|ZP_05354492.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255515668|ref|ZP_05383344.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255648762|ref|ZP_05395664.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260681982|ref|YP_003213267.1| putative signaling protein [Clostridium difficile CD196]
 gi|260685580|ref|YP_003216713.1| putative signaling protein [Clostridium difficile R20291]
 gi|306518879|ref|ZP_07405226.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260208145|emb|CBA60441.1| putative signaling protein [Clostridium difficile CD196]
 gi|260211596|emb|CBE01813.1| putative signaling protein [Clostridium difficile R20291]
          Length = 744

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 179/436 (41%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++K +  I   A+ D++T   N   F   +  ++  S    +    ++ ++I  +K IND
Sbjct: 303 RRKYVNQIENIAYLDSITNGINSTKFSMLVKPLISES---PDSTYMMIAMNIKDFKLIND 359

Query: 582 VLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   G+  L  L   +   + +  + + R   + F +++ +      +      +   
Sbjct: 360 CFGSEKGNMTLKHLYNILYKNIDENEEFVCRHDADLFYLLIKNRPVLEALELL-YKIEAD 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVS 698
                   E    +  S+G  +  +       +  +A  A       H+      S    
Sbjct: 419 TNYFNKNRENPYFLRLSVGIYTIENHNEDLITIQDHANTARKSFNKTHQSDFSFYSDIER 478

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I   +  A+EN E ++   P I +   +I G E+L++W + + G I  S F+
Sbjct: 479 KRLISEKEISNLMEKALENKEFFMCLQPKIDIKSGKISGAESLVRWKNSEKGIIYPSNFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++L++LE   + I  W  +     + I +N++ + L D    E  + + 
Sbjct: 539 PLFEKSGFICKLDLYILEETCKLISKWIKEGKEV-LRISVNVSRQHLNDKLFLEKYKHIC 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       I L  +ES+ + NPE +  ++  +   G   ++DDFG   S L  L     
Sbjct: 598 NKYNVPTCLIDLELTESIFLENPE-AIDIIEDIHSNGFKCSIDDFGFGYSSLGILKDFKV 656

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S  ++ +   R   +++SII ++K +   + A+ I     ++ L  +GCDYIQ
Sbjct: 657 DIIKLDRSFFVSKNNIDRGKVVIKSIIELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQ 716

Query: 937 DSHVASPLGFNSILKL 952
               + PL  +     
Sbjct: 717 GYVFSKPLLISDFENF 732


>gi|332297056|ref|YP_004438978.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
 gi|332180159|gb|AEE15847.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
          Length = 761

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 92/437 (21%), Positives = 190/437 (43%), Gaps = 12/437 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           KK+   +   AF+D++T   N   F    +++L  S    + +   ++IDID  K +ND 
Sbjct: 322 KKNKRDLYVLAFEDSITKGGNNSWFSIEASSLLSSSQ---DTQYAFVIIDIDHLKILNDT 378

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   G+ VL  +   +  +L   +I  R   + F ++L   ++   + D    M   I 
Sbjct: 379 FGYENGNRVLKYVYDCLNGMLVSDEIAVRAMQDDFIMLL-KFHSKEVLQDRLKLMAARIG 437

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG----GNHVESFRVS 698
                 +R   ++ S G       ++    M   A +A+ +AK +            +  
Sbjct: 438 NFNVEDDRRYVISISAGIYQVEDPRLDILTMQDRAFIALENAKRQRGSLLRCAYFREQDR 497

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +   I+  +  A+ + E  +   P   +  + + G EALI+W  P+ G I   EF+
Sbjct: 498 KRLREEKRIENRMEEALASGEFIVYLQPKYDIGSDSVTGAEALIRWLDPERGMIRPDEFI 557

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E    I +I+LF+ E++ + + S  D+   P   I +N++   L         + + 
Sbjct: 558 PLFERNGFIFSIDLFVFEQVCKLLRSELDRGLTPH-TISVNLSLAYLNRPNFLRFFKDIC 616

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K    P+ ++L  +E++V  N E    ++  + + G + +LDDFG+  S L+ L  +P 
Sbjct: 617 LKYDIPPTYLELELTETIVFENMELLIRIIREMHEFGFTCSLDDFGSGYSSLNMLKAVPV 676

Query: 879 DTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           D +K +      +        +++ S+I +A+ ++   +++ +  +  +  L ++ CD +
Sbjct: 677 DVLKLDKEFFADNGNDDLRGTSVIESVIELARKLKMKTVSEGVEKKWQVDFLRQVKCDMV 736

Query: 936 QDSHVASPLGFNSILKL 952
           Q    + P+      +L
Sbjct: 737 QGFVYSQPVCIREYEQL 753


>gi|259416606|ref|ZP_05740526.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
 gi|259348045|gb|EEW59822.1| diguanylate cyclase/phosphodiesterase [Silicibacter sp. TrichCH4B]
          Length = 496

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 190/437 (43%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+     F      + + +  D  L+  ++VI+ID +  +    G   GD V+  
Sbjct: 54  RDGLTGLLLASGFETHTRDVFNRT-EDSGLKSALLVIEIDDFDDLIGAHGQDAGDIVMQR 112

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
           +  RI  +L+  D +ARL  NRF I L      +       A  ++     PI      +
Sbjct: 113 VGERIRSVLRHRDTVARLGRNRFAICLTPIMQLDLELCIQLAGRLQYRAEEPIPFGGTSL 172

Query: 653 TVTASIGFASWTSSKITS-SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            V+ SIG          + S  L+ A  A+  A   G + + +F   +         + E
Sbjct: 173 FVSCSIGICQRHRVPKDAGSSWLECAVAALDEALIVGPSSIRAFSSDTHVHLNRTDNLLE 232

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D   A++N  +   + P I      + G EAL +W HP  G I  S F+   E+  +++ 
Sbjct: 233 DAASALQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEQAGLLQK 292

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  M+++    I SW       P  + +N A+ +L D  L   ++  + +   +P R+ 
Sbjct: 293 LSQVMVQQALTAIKSWDAAGLKVP-SVGVNFATDELRDPALVNRIRWELDRFGLTPDRLT 351

Query: 830 LSFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L ++G  + LDDFGT  + ++ +       +K + S +
Sbjct: 352 VEVLETVMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVRRFRVSRIKIDRSFV 411

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ ++   +A+ +    +   L ++GCD++Q   +  P+ F
Sbjct: 412 TKADHDPEQQKMIAAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPF 471

Query: 947 NSILKLLKERFPLVKNT 963
           +  L  +      +++ 
Sbjct: 472 DQTLDWVINHEAKLQDA 488


>gi|225851075|ref|YP_002731309.1| signal transduction response regulator [Persephonella marina EX-H1]
 gi|225645816|gb|ACO04002.1| signal transduction response regulator [Persephonella marina EX-H1]
          Length = 838

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 100/450 (22%), Positives = 198/450 (44%), Gaps = 31/450 (6%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +QK          F D LT + NR+                +     ++ +DI  ++ 
Sbjct: 407 IQQQKDLFHKE----FFDTLTDLGNRKL-----LLSELKELVREEEEFYLVFLDIYNFRF 457

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN++ G  VGD +L  +   + E L     + R   + F +++        I      +R
Sbjct: 458 INEIYGEKVGDLLLREIADTLKEFL-DGYKIFRSGSDTFTVVVRD----KDIMSVLEKIR 512

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +  +P ++ +  I +  ++    +     + +++    E  +  +K +G NH+  +   
Sbjct: 513 LAFTIPFSIEDHIIHLDFNVSVVKYPEDGKSETDIYIKGERTLELSKSKGKNHILFYNEK 572

Query: 699 SFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            ++       I+E +  A+  ++      P++    + ++  EALI+W  P+   I  SE
Sbjct: 573 DYQKVKTIKEIEEKIETALIENQFTFNLQPVVDFKTDSVIAAEALIRWKTPEGEYIPPSE 632

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE+   IK I+  ML ++   I  W+ +    P+ I +N+  +++   E+   +++
Sbjct: 633 FIPIAEKTGQIKDIDNLMLVKVNDIINRWKREGLN-PVKISVNVTPQNI--EEIIYKIKS 689

Query: 817 LIS---------KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
                       + L +   I +  +E  ++ +  R +  +  LRK+G  +++DDFGT  
Sbjct: 690 TNKMVFFKVPEGELLLNSKYIIMEITERDLL-DLYRQKKDIDNLRKMGFEISIDDFGTGF 748

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L YL  I  D++K + S +      E    +++SII +AK      IA+ +  E    
Sbjct: 749 STLKYLANINVDSIKIDMSFIKDMLIDENVHKLVQSIINIAKIFNIKTIAEGVETEEQYI 808

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           EL ++GCD  Q  + + PL     +K LK+
Sbjct: 809 ELKKLGCDRYQGYYFSPPLEPEEFVKFLKK 838



 Score = 61.5 bits (148), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 24/180 (13%)

Query: 404 GER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
            ER         +   ++        V     +  I   +   +   + + L  +H  DR
Sbjct: 131 EERSLFETISKVAPIGIF-LQRKGRLVFVNKKVEEITEYSEKELL-DMDDILLIVHPEDR 188

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
              + +++      +    Y  ++    N+  W+ I    + + +G+    IG   DIT+
Sbjct: 189 KKVKEVIELRNKGIKKFANYRIKIITKSNRIKWIHINSETV-SYHGEYSG-IGTIEDITK 246

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM--VIDIDKYKKI 579
           +    +                    L R+  ++   +  D L   V+  +I +D +  +
Sbjct: 247 EVHLEKAKE----------------LLFRINRLIMKISEIDVLLKAVVDTLISVDDFSDV 290



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           + +  D   +    + +I T+LG +S  +     N+L  +H +D +  + I    +  + 
Sbjct: 26  VFFLLDKDLNFKNVSENIKTVLGYSSDQLVNNRVNFLDIVHSDDINKVKDIPKKILDRKG 85

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                  ++R+ D +  ++  R   +   + D   +IG   D T++
Sbjct: 86  LFQIDNLKLRSKDGKEVYVSCRKIYIKGKDSD--YFIGYILDKTKE 129


>gi|330958121|gb|EGH58381.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 608

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 189/427 (44%), Gaps = 16/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D  TG+ NR    + +   L            V +I       I   LG +   D++ 
Sbjct: 168 FIDQPTGLYNRSRLEEDIHQALASGIDYQ--LVAVDMISSTFLNDIVKALGYSFSQDMVT 225

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+  LL     L ++S  RFG +L  ++           + ++   P+      + 
Sbjct: 226 EIKNRLESLLPSGCPLYKVSPTRFGFLLPHDHVPEH---LFRTILQNFETPVECRGIPVQ 282

Query: 654 VTASIGFASWTSSKITSSE-----MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
           +   +G  S       + +     ++  A+ A       G    E    ++ +    ++ 
Sbjct: 283 MQVGLGVVSLNREPDNNDQDWMRMVISAADDARDR--DLGWAMYEPHYDAAQQRAFKLLS 340

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
                   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 341 SLTTAVHAHDQLRLVYQPRIDLNTGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 400

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L+       SW+ +       I IN++ +DL      + M  L+ +    P+R 
Sbjct: 401 PLSLWVLKSAIEQAASWQQEGFD--FRIAINVSPEDLTGPAFTDRMIRLLGQHKIDPTRF 458

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 459 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 518

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 519 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 578

Query: 947 NSILKLL 953
           ++++  L
Sbjct: 579 DALVDWL 585


>gi|75674698|ref|YP_317119.1| diguanylate cyclase/phophodiesterase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419568|gb|ABA03767.1| diguanylate cyclase/phosphodiesterase [Nitrobacter winogradskyi
           Nb-255]
          Length = 592

 Score =  335 bits (859), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/556 (21%), Positives = 238/556 (42%), Gaps = 26/556 (4%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNWLPYIHIN 459
            +   R S  +   G   + WDI  D +  T   A+I  G+    +      +   I  +
Sbjct: 30  ATQEPRVSAILTALGRAAFVWDIPSDAINWTEGAASIFKGIDPF-LLATGARYGRLIEPS 88

Query: 460 DRDNFRTILDSFVGYRRGRLQ------YEFRVRA-ADNQFHWMIIRIRPMSNSNGDILRY 512
              + RT + S     R R         E+ VRA A     W+       ++++G ++R 
Sbjct: 89  --GSVRTNIFSAAPTTRRRFDEGVPYFIEYGVRASASAPMLWIEEAGCWFADADGKVVRV 146

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            GI     E++   E ++  +  D LTG  NR      L   ++ +A         M++ 
Sbjct: 147 EGIVRLENERRARDEQLINLSRNDALTGELNRTYLTAALAEAIEEAARY-RSPVAFMMVG 205

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID   +IN+  G  V D+V+  + RRI   L+  D L R SGNRFG+IL +     +++ 
Sbjct: 206 IDHLARINNAFGFDVADEVISDVARRIRRRLRSGDTLGRFSGNRFGVILKNCG-LDEVSI 264

Query: 633 FAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
            A  +   I   I +     ++VTASIG         T+ E +  A+  +  AK R    
Sbjct: 265 AAERLLAGIREEIVMTKSGPVSVTASIGAVLAPRYAQTADEAINRAQEILEVAKGRRCGS 324

Query: 692 VESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +  +R  + R  +  I     +++  A+    +   +  ++     E    E L++    
Sbjct: 325 LAVWRPDTEREAQRRINIRVTDEIVTALNERRILTAFERVVDARTREAAFYECLVRMQQQ 384

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               + + + + +AE+L +I+ ++  +LE +  ++         P + + +NI+ +  +D
Sbjct: 385 NGQILLAPDVVPVAEKLGLIRLVDHRVLELVIAELAEA------PHVQLSLNISPETTMD 438

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +    ++AL+        R+ +  +E+  + + +  +  + RL+ +G  + +DDFG   
Sbjct: 439 VDWWAAIEALMGAHPGVAERLIVEITETAAIQDIDDVQRFVTRLKNLGSRIAIDDFGAGY 498

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           +    L  +  D VK +G+ +     +    A ++++I +A+ ++   +A+ +  E    
Sbjct: 499 TSFRNLRKLGVDIVKIDGAFVQNLARSSDDRAFVQTLIDLARRLDIRTVAEWVQDEQSAA 558

Query: 926 ELTRMGCDYIQDSHVA 941
            L   GCD+IQ   + 
Sbjct: 559 MLRDWGCDFIQGRLIG 574


>gi|283787828|ref|YP_003367693.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282951282|emb|CBG90977.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 654

 Score =  334 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 193/442 (43%), Gaps = 14/442 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  E +  NA +  ++ +PN+   +  L  +     T       +M++  +  +    V
Sbjct: 221 KRQSEELTGNAMRFPVSELPNKAFLMGLLEQVAARQQTT-----ALMIVTCETLRDTAGV 275

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           L  A  + +L++L  ++  ++    +LA++SG  F II                +   I 
Sbjct: 276 LQEAQREILLLTLVEKLKSVISPRMVLAQVSGYDFAIIAHGVKEPWHAITLGQQVLTIIN 335

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             + +   ++  + SIG A +  + +++ ++   A  A + A+ +G N ++ F      +
Sbjct: 336 ERLPVQGIQLRPSCSIGVAMFYGN-LSAEQLYSRAISAAFTARRKGKNQIQFFEPEQMEA 394

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  +  + D+  A+EN +  L   P + +    +V +EAL++   P          +  
Sbjct: 395 AQKRLTEESDILTAMENHQFALWLQPQVDIASGRVVSVEALLRMQQPDGSWALPEGLIEQ 454

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   ++  +  ++LE   R + +W+++     + + +N+++  L+  ++ + M AL+++
Sbjct: 455 IESCGLMVTLGHWVLEEACRQLAAWQERG--IALPLSVNLSALQLMHPDMVKDMLALLNR 512

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI---P 877
               P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L ++   P
Sbjct: 513 YRIQPGMLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSVP 572

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            D +K +   + G  E   +++ +II +A+++    IA+ +  ++    LT  G +  Q 
Sbjct: 573 IDMLKIDKMFVEGLPEDN-SMISAIILLARSLNLQTIAEGVENDVQRDWLTGAGVEIAQG 631

Query: 938 SHVASPLGFNSILKLLKERFPL 959
                 +          +   +
Sbjct: 632 YLFGRAVTAEIFEAQYLQHNSV 653


>gi|304398119|ref|ZP_07379994.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Pantoea sp. aB]
 gi|304354405|gb|EFM18777.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Pantoea sp. aB]
          Length = 668

 Score =  334 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 97/436 (22%), Positives = 195/436 (44%), Gaps = 13/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +        +T +PNR  FL     ++D           +MVI I+  ++ N VL  
Sbjct: 235 HDEMSRLTTHFPVTDLPNRTLFL----ALVDQCMRMPEQSLGLMVIRIETLQEANGVLSD 290

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D ++++L  +I   L    +LA+   + F +++   +N  +    A  +   +  P+
Sbjct: 291 EQRDTLMLTLVEKIRNTLDDHTLLAQTGTSDFVLLMKRASNPFRALRLARNLMIRLNQPV 350

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           NL + ++    SIG A      ++++E+L  A  AM  A+H+G N +  F  +     + 
Sbjct: 351 NLHQLQLRPNLSIGLALHEDQPLSANELLDRATSAMMSARHQGKNQILFFDAALTERAQK 410

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+   + + +  L   P + +    + G EAL++   P      + EF+  AEE
Sbjct: 411 RLTQEHDILQGLHDDQFALYLQPQVDMRTGALTGAEALLRMRQPDGSYGLTEEFIASAEE 470

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I AI  ++ E   R +  W+ Q  M  + + +NI++  L D  +   +QAL+++   
Sbjct: 471 IGVISAIGRWVFEEACRILAGWQRQGIM--LPLSVNISAVQLRDTGVVSHLQALLTRHRI 528

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPFDT 880
           +P  + L  +E+  + + E++  +L  L++ G+++ LDDFG   S L+YL     +P + 
Sbjct: 529 APDTLVLEVTETAQLDDAEQAMSMLRLLQQTGVAVALDDFGMGYSNLNYLHQLKALPVNK 588

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K + S +         ++R +  +A+ I   +IA+ +        L   G    Q    
Sbjct: 589 LKMDRSFVAALPHDD-TMVRIVAAIAEIIHLEVIAEGVETAEQRDWLLARGIAIGQGYLY 647

Query: 941 ASPLGFNSI-LKLLKE 955
           A  L         ++ 
Sbjct: 648 AEALPLTRFNQAWIEN 663


>gi|126727930|ref|ZP_01743756.1| hypothetical protein RB2150_15520 [Rhodobacterales bacterium
           HTCC2150]
 gi|126702790|gb|EBA01897.1| hypothetical protein RB2150_15520 [Rhodobacterales bacterium
           HTCC2150]
          Length = 558

 Score =  334 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 96/560 (17%), Positives = 212/560 (37%), Gaps = 29/560 (5%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
                  + D +         +   P I   L      + G      P     +R  F  
Sbjct: 7   YRDVAQSTTDGILVLTRDGQVLWANPKINKALKYIDNGLVGKNIFKKPLGESTNRSTFNL 66

Query: 467 ILDSFVGYRRGRLQYEFR-VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
                +       Q +F  +   D       I + P+ +   +    +    + +     
Sbjct: 67  SKAGNLEIIETSGQKKFISLIPKDGGTSRFKIDLSPIKSGK-NTGNLVATLFNAS----L 121

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +     A                         +        V+ ID++K+ + ND+ G 
Sbjct: 122 PQNPKFEAH-----------------EAQQQYESRRAKGVLGVLAIDLEKFTEFNDIHGQ 164

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             GD  L+ +   +    +    + R   + F I   +  +   +      +  +I+ P 
Sbjct: 165 LAGDAALLHVAAVLNNQTRADCTVTRTGNDEFQIKSPNVTSIDGLTQLGNRLIHAISQPF 224

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SD 703
           +  +  + V ASIG +   +++I+ ++++  A +A+   K    + V  +     +   +
Sbjct: 225 SFEQNNLRVFASIGASLANTNEISIADLVHQARMALTQCKQSSTHDVIVYTPQIHKLVQN 284

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +  DL   ++  E      P + +   +I G EALI+W HP+ G +S  +F+ +AEE
Sbjct: 285 ERNLLNDLKEGIKKQEFITFLQPQLDIATNKISGFEALIRWQHPERGLLSPFDFLPMAEE 344

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++  ++   +    R        +    + I IN + + L        +Q        
Sbjct: 345 HGLVAQLDNIAMHHALRAASEIGKSSLGR-LNISINASEQSLAMPNYAHLVQWTADAYDV 403

Query: 824 SPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               I +   E+ V  + + +  L +  LR +GI+++LDDFGT  + L+++  +  D +K
Sbjct: 404 PLETISIEILETTVFSDTKPAITLSIENLRALGIAVSLDDFGTGFAGLAHMSELDVDAIK 463

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL+ G  +      I++++I +  ++E  ++ +    +  +  L +  C  +Q   +
Sbjct: 464 IDRSLIQGMEKNIRNQKIVKALISLCLDLEIKVVVEGAETDTQVALLEKWKCPIVQGYGI 523

Query: 941 ASPLGFNSILKLLKERFPLV 960
           A P+  +S ++ ++ER  L+
Sbjct: 524 AIPMPVSSAIEWVQERKTLL 543


>gi|260467212|ref|ZP_05813388.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
 gi|259028987|gb|EEW30287.1| diguanylate cyclase/phosphodiesterase [Mesorhizobium opportunistum
           WSM2075]
          Length = 688

 Score =  334 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/459 (22%), Positives = 202/459 (44%), Gaps = 24/459 (5%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           + K++ E    +L  +  D LTG+ NR++  ++L    +           ++ ID+D +K
Sbjct: 238 QHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWNDWQKLGTGFVAIL-IDVDFFK 296

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K ND  G   GD  L+ +   + +++  +   + R  G  F ++   E    ++AD A A
Sbjct: 297 KFNDCYGHQEGDRCLIQVANALSDMIKHYNGSIGRYGGEEFIVLARMEK-KDQVADLAEA 355

Query: 637 MRK-----SIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGN 690
           + +     +IA  +      I VTAS+G A     +     +++  A+ A+Y AK  G N
Sbjct: 356 ICRTVENLAIAHELRRDGISI-VTASVGAAFTRKQTGAKLEKIIHEADRALYLAKAGGRN 414

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  +      +   +   L +A+    + LVY PI  +    +  +EAL++     
Sbjct: 415 CARLFDPTDPQSSDESENLAALLKIAIGQDLVSLVYQPIKDVASGRVEAVEALMRLKMLD 474

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +  S F+ +AE    I  +  + +  +  ++      A+     + +N++   L   
Sbjct: 475 GTLVPPSLFIPVAERTGSILELGRWAIRTVCAEL-----LADDHVRLVSVNVSPIQLKTP 529

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                +  ++ +T  + +R+    +E + M         +  L+ +GI + LDDFGT  +
Sbjct: 530 GFAASVATILGETGVTGNRLAFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFA 589

Query: 869 LLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LS+L  I FDTVK + S +   +T    A+L+ II + +N    I+ + +  E  +  +
Sbjct: 590 GLSWLRLIDFDTVKIDRSFLHDCATPNGKAMLQDIIALVRNRGHKILVEGVETEEQMALM 649

Query: 928 TRMGCDYIQDSHVASPLGFN--SILKLLKER-FPLVKNT 963
              G D +Q  HV  P+        + ++ R F ++K+ 
Sbjct: 650 REFGIDKVQGFHVGRPVPAANVQANRAVQRRPFTVLKSA 688


>gi|134102099|ref|YP_001107760.1| two component signal transduction response regulator
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914722|emb|CAM04835.1| two component signal transduction response regulator
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 706

 Score =  334 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 118/582 (20%), Positives = 241/582 (41%), Gaps = 29/582 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + +     + + +   R       +   V   D+    V   P +   LG  S       
Sbjct: 133 LRSKLQADRDLAASEARFGEVFTTTPIGVAICDLTGKFVQVNPALGETLGYRSQDFGSMT 192

Query: 450 RNWLPYIHINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            +     H  D               R  RL+   R+  AD +  W  + +  +  ++G 
Sbjct: 193 VH--DLFHPEDAKYLTAAYAELAEGGRTQRLRERRRLLRADGEPAWAYLAVSVLKGADGA 250

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
              ++ +  DI+E     E     A  D +TG+PNRQ F  RL   L     D   R T+
Sbjct: 251 PAHFVTMVEDISELHLLQERFQYQALHDAMTGLPNRQFFRTRLEAALGNLPKD--ARLTL 308

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNS 627
             + +D ++ IND LG  VGD ++ ++ RR+ +L++    ILAR  G  F ++++    +
Sbjct: 309 YHLGLDGFELINDGLGHEVGDGIIKAVARRLEQLIQREEAILARFGGTEFAVLVLESPRT 368

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             + +FA  + + +A PI + E  I  +ASIG     +    ++ ML  A++A+  A+  
Sbjct: 369 PPVHEFAPMINEELAEPIYVGEHGIATSASIGVVQRCAGDGDAANMLWAADVALRRAEAA 428

Query: 688 GGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G      F          +  +   +   +E  E  +VY P+++L D +++ +EA + W+
Sbjct: 429 GKRQWALFDPDRAPDERTQAKLAAVMPGGLELGEFDVVYRPVVQLGDSKLIAIEAELSWE 488

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             ++G +  ++ + +AE   +  ++  +ML      +  W    + PP+ +   ++    
Sbjct: 489 TGEFGRLDHADCLRLAERSGVTLSLRDWMLGSAWEQLARWHRAGHRPPLVVG--LSPNQA 546

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D +L   ++ ++ +     S +++S    V++G+ + +R  +  L ++G+   L  F  
Sbjct: 547 ADPDLVGTIRRVLDEGSLDASWLRVSMPMRVMLGDNDEARDNVRFLDRLGVRTALHGF-- 604

Query: 866 KCSL---LSYLGYIPFDTVKFNGSL-------MTGSTEKRIAI--LRSIIPMAKNIETTI 913
             +    L YL  +P D +             +  S E    +  ++  +P+ ++    +
Sbjct: 605 -HASPGELRYLRDLPVDII----QFADDVVRLVRDSAEDSPEVEAVKRFVPLVRSCGRRL 659

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              D+  E   +    MGC+    +    P+    +  LL +
Sbjct: 660 AVGDVDSEEQARRWHEMGCEVGAGALYGGPVPNVEVPNLLAQ 701


>gi|220926138|ref|YP_002501440.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
 gi|219950745|gb|ACL61137.1| diguanylate cyclase/phosphodiesterase [Methylobacterium nodulans
           ORS 2060]
          Length = 665

 Score =  334 bits (858), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 195/445 (43%), Gaps = 18/445 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+    E +L  +  D LTG+ NR++ +D+L +    +  + +    V++IDID +K  
Sbjct: 220 TER---GEELLKLSTTDALTGLLNRRA-IDQLLSEFWGAWKERSAAFGVILIDIDYFKMF 275

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND  G   GD  LV++ R + E+       + R  G  F I+L+SE  +   A       
Sbjct: 276 NDYYGHQKGDACLVAVARVMEEVAARHGCRIGRFGGEEFIILLLSETEAQIAAVAEDVRG 335

Query: 639 KSIAMPINLL---EREITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVES 694
               + I      +   TVT SIG A            ++  A+ A+Y AK    N V+ 
Sbjct: 336 SIQVLKIPHEARLDHLATVTVSIGAAFCRGIAADKPERIVTGADRALYLAKDSNRNCVKL 395

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F    F ++     + E +  A+E   + LVY PI  +    I   EAL++        I
Sbjct: 396 FDERLFGTNSTQDSVIEAMRSAIEQDRVSLVYQPIWDVAAGRIRAAEALMRLSAADGTAI 455

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+ +AE    I  + ++   +  R +             I +N+++  L      E
Sbjct: 456 SPALFIPVAERTGAIVDLGIWACRQACRQLSLTEAIP-----TISVNVSAVQLRRPNFVE 510

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A++ +   +P R+ +  +E + +         +  L+++G+ + LDDFGT  + LS 
Sbjct: 511 TVGAILREAKVAPHRLAIEITEGLEIETDSAVAETIAALKRLGVQIWLDDFGTGFAGLSC 570

Query: 873 LGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L  I FDTVK +   +  S   +   +L+ II + +N    I+ + +     +  L + G
Sbjct: 571 LSRISFDTVKVDRLFVQASDTPRGAKMLKDIITLVQNSGQNIVVEGVETGEQVALLKQYG 630

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
              +Q  +   P+  +++  LL  R
Sbjct: 631 VGLLQGFYFNRPMSADAL-GLLAAR 654


>gi|256821397|ref|YP_003145360.1| diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
 gi|256794936|gb|ACV25592.1| diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
          Length = 552

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 190/435 (43%), Gaps = 10/435 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +  +   +  ++ T +PNR +  D L   +            ++++ I+   ++    G
Sbjct: 120 YMRHLKWLSRHNDATELPNRSALFDALK--VLREKRKSESTIYLVLVSIENTLELKSAFG 177

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             V D     L +R+ +      ++      +  ++L    +     D    + +++  P
Sbjct: 178 FNVIDQATRQLAKRLQDC-NGGQVVYHTDSAQLALVLTG--SDEHNHDVLEQLGEAVQEP 234

Query: 645 INLLEREITVTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           +   +  I + A +G+A     K      + +         +      V S  + S   +
Sbjct: 235 VLFNDIPIHIEARMGYAMLNKIKKDPHVYLQRAEAALALAQERDQDVTVFSPEIVSKTEE 294

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +MI  +L  A+ N ++ L Y P I L +  I  +EAL++W+HP+ G I    F+  AE+
Sbjct: 295 NLMILGELKNALANGQISLHYQPKIDLSNGNICSVEALMRWNHPERGMIPPGLFIPRAEQ 354

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I+ +  F LE     I SW+ Q     I I +NI++++LL     + + +L+ K   
Sbjct: 355 STLIQTVTEFALEEALSQIKSWKRQGIE--IPIAVNISTRNLLHPHFTDLVLSLLEKYQL 412

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S   ++L  +E  +M + E++   L RL    +++++DDFGT  S L YL  +P   +K 
Sbjct: 413 SGECLELEVTEGSLMVDMEKTIDELIRLAGAKLTISIDDFGTGYSSLQYLHRLPASLIKI 472

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +      +    I+ + + +AK ++   IA+ +        L  +GC+ +Q  ++A
Sbjct: 473 DQSFVRRLPNDKGAAHIIDAAVTLAKKMDIQTIAEGVETREVYDYLRNIGCNMVQGYYIA 532

Query: 942 SPLGFNSILKLLKER 956
            PL         ++R
Sbjct: 533 KPLPVKEFNDWYQQR 547


>gi|261855296|ref|YP_003262579.1| diguanylate cyclase/phosphodiesterase [Halothiobacillus
           neapolitanus c2]
 gi|261835765|gb|ACX95532.1| diguanylate cyclase/phosphodiesterase [Halothiobacillus
           neapolitanus c2]
          Length = 932

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 100/636 (15%), Positives = 232/636 (36%), Gaps = 48/636 (7%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W L   +     +       +  +          +++ IG  ++   L      + I   
Sbjct: 308 WALPLDYSTVQQIRDRWLPGDTSLIVLFKSYGWWLLLPIGLMLLVFFLQGKRTQKKIARQ 367

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             +    +    D V    +    +        +L                  H ++   
Sbjct: 368 EIQLRKTLNALEDSVVVLSLDGRVLFANQPSRQLLRHPVE-------------HTDELSG 414

Query: 464 FRTILDSFVGYRRGRLQYEFR------VRAADNQFHWMIIRIRPMSNSNGDI-------- 509
               +   + +R     ++ R       +  +  +   +     + + +  +        
Sbjct: 415 RHYTVLFDLRWRESDPNFDLRTAIGLLCKRPEQSYSLQLSVGHQIKDIDVHLRLLGSCLD 474

Query: 510 ---LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               + I    D+T+ +++   +   A  D LTG+ N  SF D L T  ++         
Sbjct: 475 KLSSKIILTLRDVTDYREATALLAYRASHDRLTGLLNLASFADFLETQCNVL-EQKKSEG 533

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D ++ IN+    + GD V+  +   +   +    ++ARL  + FG+ +    +
Sbjct: 534 LILWLDVDDFRLINETNSRSAGDQVVARIASFLSFSVPPTGVIARLGVDEFGVWIPDVQS 593

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                     +     M   + ++ + V+ S+G     +     +++L +AE A   A  
Sbjct: 594 FPYQQWPDELLSGLQDMRFEIGDQRLRVSVSMGACL--ADYRLGADLLNDAEAACRRAHR 651

Query: 687 RGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELY-----LVYHPIIRLMDEEIVG 737
            GGN V  F         R  ++     L  A++   L      +V  P+       +  
Sbjct: 652 EGGNRVVWFSRDDQEIESRRHQLATLHQLKQALDEEGLMQVIQAIVPLPLPSANQALLPH 711

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E L++         S  +F+  AE+   +  I+ +++ +    +         PP+ + 
Sbjct: 712 YEVLLRLRGADGSLQSPVQFIEAAEKYHFMSEIDRWVIRQTFALL---TRCGKNPPL-LA 767

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           IN++   + D  +   +++   +    P+ I    +E+  + N E    L+  LR++G  
Sbjct: 768 INLSGATVQDPSMNAFIRSAFREFNLDPALICFEITETSAITNYELVLELVHSLRQLGCK 827

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           ++LDDFG       ++  +  D VK +G L+           I+R+I  +++ +    I 
Sbjct: 828 ISLDDFGAGLLSFEFMRRLQPDFVKIDGKLVRDIEHDPVASVIVRAIQQVSEVMGAKTIG 887

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  E  ++ L  +G D+IQ  +  +P+   ++++
Sbjct: 888 EWVENEATLRRLEAIGIDFIQGYYYHAPVPIETLIQ 923


>gi|266621212|ref|ZP_06114147.1| putative sensory box sensor/GGDEF/EAL domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288867142|gb|EFC99440.1| putative sensory box sensor/GGDEF/EAL domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 755

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 183/434 (42%), Gaps = 12/434 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             + +   AF D LTG PN  +F        +L+ T      ++++++++ +K IN+ LG
Sbjct: 324 HRKQLERLAFVDPLTGGPNHAAFQ---LKYTELADTMVPNTYSILLMNVNGFKLINERLG 380

Query: 585 IAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           I  G  +L  + R +   L+  D    AR+  + F + L  E++  +I      + + I 
Sbjct: 381 IQAGSQILAYIYRVLNHRLRSEDNEFAARVESDHFFLCL-KEHDPARIQKRLDGIIREIN 439

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              +       +   +G        +  + +   A LA              +  S    
Sbjct: 440 DFHHTDLTAFRLEFRLGACIVDDPGLEIARLQDRARLACQSQTAGHREKCAFYDNSLTER 499

Query: 703 DRVMIK-EDL-CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +  +  DL   ++EN +  + + P + L      G EAL++W HP+ G I  S+F+ +
Sbjct: 500 IMLEQELNDLFETSIENHDFKVYFQPKVLLESNRAEGAEALVRWIHPEKGVIFPSDFIPL 559

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E    I  ++ ++  ++ + + +W       P+ + +N++ +  LD    +    + ++
Sbjct: 560 FEMNGKICRLDFYVFTQVCQTLHNWIATGKN-PVPVSVNLSRRHFLDQNFLKKFADIAAE 618

Query: 821 TLYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
               P  I+   +ES+   N   +  + ++ ++ ++G   +LDDFG+  S L  L     
Sbjct: 619 YEIPPGMIEFELTESIFFDNRQIDVVKEMIHQMHQLGFLCSLDDFGSGFSSLGLLKEFDV 678

Query: 879 DTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           DT+K + S       ++   ++  +I ++K +    +A+ I     +  L  + CD +Q 
Sbjct: 679 DTIKLDRSFFVNMEGEKAKDVIACLIELSKKLRVHTVAEGIETSEMVDYLRTIKCDMVQG 738

Query: 938 SHVASPLGFNSILK 951
              + P+  +    
Sbjct: 739 YIFSKPIPVSEFEA 752


>gi|114797866|ref|YP_760679.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114738040|gb|ABI76165.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 623

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 184/437 (42%), Gaps = 17/437 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +  +      A +D LTG+ NR+SFLD +      +         +  +D+D++K +ND
Sbjct: 197 LRTLVTKTTRLAAEDPLTGLRNRRSFLDVVE-----AHAGTGADYFIAFVDLDRFKPLND 251

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A+GD+VL ++  R+ +        ARL G+ F ++        + A     +   +
Sbjct: 252 EFGHALGDEVLRTVANRLEDHPFVLA-AARLGGDEFAVLCAVPGEPGEAARQMSILHSGL 310

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSF 700
           + PI      ++V ASIG+     +    S++L +A++AM  AK    G         S 
Sbjct: 311 SAPIRSEAGSVSVGASIGWGRAGIAGTQVSDVLHSADVAMRRAKVEHLGVVEFDPVADSA 370

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS-SSEFML 759
                 I+     A+    +     PI+ + D  IV +E L +W    +       +F+ 
Sbjct: 371 ALTSSAIEIAFRHALATGRIRGALQPIVSVNDGRIVAMELLARWPKSGFPRDPAPQDFIP 430

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE L ++  I    L +                  + IN++   L+ ++    + A+I+
Sbjct: 431 IAERLGLLNDILWATLRQAL-------PSLTGTSWLLAINVSPSQLISSQFLPKLSAIIA 483

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P RI+L  +E V   N +++  +L   R +G  + LDDFG   S L+ L  +P D
Sbjct: 484 QHGIPPERIELEITEQVAFRNVDQNCAVLDEARALGFRVVLDDFGAGYSSLAMLDRLPLD 543

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + + +    E+     IL++ + +A  +  T   + I        +   GCD +Q 
Sbjct: 544 KIKLDRAFVGELRERTEIQKILKATVSLAHELGMTCSVEGIECAETAAMVAAFGCDQMQG 603

Query: 938 SHVASPLGFNSILKLLK 954
             +  P        LL+
Sbjct: 604 YWIGMPELIEQAPVLLE 620


>gi|240143643|ref|ZP_04742244.1| FOG: EAL domain protein [Roseburia intestinalis L1-82]
 gi|257204391|gb|EEV02676.1| FOG: EAL domain protein [Roseburia intestinalis L1-82]
          Length = 700

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 189/467 (40%), Gaps = 21/467 (4%)

Query: 498 RIRPMSNSNGDILRYIGIANDIT------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           R++ + ++   ++  I +   ++        ++S + ++  A+QD +T         D  
Sbjct: 243 RMQVVMDAINSLMVIILVVISVSVGVYIYSWRQSKKELMSLAYQDPVT-------LGDNF 295

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
                 + +  +    ++ +D+  +K IN   G+  GD+VL  +           ++ A 
Sbjct: 296 AAFKKKAKSKKDGVGWLIAMDVTDFKLINSTCGVKKGDEVLRVIWEIFETETGENELAAH 355

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           ++ +RF +  + EN           +RK   +P  L    +     I             
Sbjct: 356 VNADRFILFWMDENQENIKQRLEHVIRKIEEIPERLEIPNLFPVFGIFHTIVLDE---ID 412

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +  NA  A +  K R   H   +   +     +   ++E    A+EN E  + Y P   
Sbjct: 413 PLYGNAVQAKHQIKGRRDRHYIFYDELNHESIQENRELEEHFETALENEEFEIWYQPKYS 472

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               ++VG EAL++W       I   +F+ + E    I  ++ ++   + R    W+ Q 
Sbjct: 473 AHSRKLVGAEALVRWRRADGALIPPLKFIPLFERNGNIIRLDEYVFRAVCRQQKEWQKQG 532

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + +NI+   L  + + E  +++I         I+L  +ES  + N E    LL 
Sbjct: 533 QKM-LPVSVNISRVSLYYSSVVEKYESIIRSFDLDSKYIQLEITESATIDNNEIF-NLLE 590

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKN 908
           +    G  + LDDFG+  S L+ L  + FDT+K + SL+    +     +L SI  +A++
Sbjct: 591 QFHTAGFKILLDDFGSGYSSLATLNRMHFDTIKLDKSLVDYIGDDNGEKLLNSITKLAQS 650

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               I A+ +     +  L  + CD IQ  + + PL      + LKE
Sbjct: 651 FGMEITAEGVETVEQLMFLCNLDCDDIQGYYFSRPLPVKEYEECLKE 697


>gi|323705210|ref|ZP_08116786.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535636|gb|EGB25411.1| diguanylate cyclase/phosphodiesterase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 425

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 195/420 (46%), Gaps = 16/420 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PNR    D            D  +   ++ D D    IN+  G   G+ V V
Sbjct: 13  YYDYLTNLPNRYFLYDYYKQ--------DANKFIFVLFDFDNLTYINNSYGHLFGNKVSV 64

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +++ + E +K    + +  G+ F ++  S  +     +    + +       +  ++I 
Sbjct: 65  KISKVLTETVKESGKIFKFDGDEFIVVFHSNFDKT--INIVEDVTQKFNYFFKVEGKDIL 122

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
            T + G      S     ++++ A +AM  AK  G +    F   +  +      +  D+
Sbjct: 123 TTVNAGI-YIPKSGEHIDDIIRKANVAMLKAKMLGKSKYIVFDKVTEDNTLKKTGMIVDI 181

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N+E YL++ PI  L +  +  +EAL++W + K+G+IS S+F+ + EE   IK   
Sbjct: 182 KKAMLNNEFYLLFQPIYNLKENRMEEVEALVRWKNKKYGDISPSQFIAVIEESGFIKEFG 241

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           + ++E + + I  W+++     + + IN++   L +++     + LISK   + + + + 
Sbjct: 242 ILVIEDVFKQINYWQNRG--IALKVNINVSPLQLKEDDFLFKFEQLISKYNTALNLVGME 299

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           F+E+ ++   ++    +  L + GI ++LDDFG   S L  +   P  T+K + SL+   
Sbjct: 300 FTETQILNINKQEINKIKELLRRGIKISLDDFGVGYSSLINMIEFPISTIKIDKSLIDRI 359

Query: 892 TEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            E +   +++ I+ ++K +   +IA+ +  +  +  L   GCD IQ  +++ P     I 
Sbjct: 360 NENKVKTLIKGILHISKEMNYEVIAEGVETKEQLGMLKEWGCDKIQGYYISKPKTSKEIE 419


>gi|289626649|ref|ZP_06459603.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649487|ref|ZP_06480830.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869626|gb|EGH04335.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 607

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQALASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 223 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPTEEQDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLASGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLNWL 584


>gi|224373357|ref|YP_002607729.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223588575|gb|ACM92311.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 552

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 106/575 (18%), Positives = 234/575 (40%), Gaps = 45/575 (7%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
           ++  L    +I ++  +    + + +  ++    +  + + +  +D  +  +        
Sbjct: 11  MLESLFESGIINNLNTSFNSEEQLINFLDK---IINSTIEGLIIFDENKKCIRANKPACE 67

Query: 437 ILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           I G     M G       ++    RD  +  +       + +  YE  +   D      +
Sbjct: 68  IFGYKPKEMIGKPA--FEFVAPESRDLVKNRI-----VIKDQSPYEALMIRKDGTKFPAM 120

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +R + +  +N  I   I    D++E K+  + I   A+ D LT +PNRQ  +  +  +  
Sbjct: 121 LRGKDILINNKKIR--ISAVIDLSELKEKEKEIYKIAYYDKLTNLPNRQKMISDMNNM-- 176

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 N+   V+  +IDK+ +IND+ G  +GD +LV     + +         R+ G+ 
Sbjct: 177 ------NVHACVIF-NIDKFGQINDLFGSEIGDKLLVKFAEELKK---EHINPYRIGGDE 226

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLK 675
           F ++   +     +  F   + + I     L + E   +    G A          ++L 
Sbjct: 227 FAVLFNEKMTYENLEKFIKKIIEKIEKMEFLAKNEPFHIHIRAGAAI------NGHKLLT 280

Query: 676 NAELAMYHAKHRG---GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +A++A+  AK +      + ES ++       + +   +  A+EN+ +   Y PI    +
Sbjct: 281 HADMAVREAKMKKIPFQIYDESLKIEEKYKKNLAMTVAIHRALENNGIICHYQPIFD-RN 339

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I   E L++        +   EF+ IA+   +   I   ++++          +    
Sbjct: 340 KNISKYEVLVRMRDENGKILLPGEFLPIAKTTKLYTRITKEVIKKSCEKFSKTGKEF--- 396

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
                +NI+  D+ D EL + +   +  T  +  +I     E+  + N +  +  + +++
Sbjct: 397 ----NVNISIDDINDPELVDFILQTLKNTD-TGKKIGFEILETEGIENYDIVKNFIDKVK 451

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           K+G  + LDDFG+  S   ++  +  D +K +GSL+      +K + ++ +II  AK I 
Sbjct: 452 KLGAKVLLDDFGSGYSNFKHILSLNIDCIKIDGSLIQEVYKHKKNLIVVETIIDFAKKIG 511

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
              +A+ +  +     + ++  DY Q  ++A P+ 
Sbjct: 512 ANTVAEFVCCKETFDIIKKLDIDYFQGFYLAKPMP 546


>gi|170766867|ref|ZP_02901320.1| putative diguanylate cyclase [Escherichia albertii TW07627]
 gi|170124305|gb|EDS93236.1| putative diguanylate cyclase [Escherichia albertii TW07627]
          Length = 651

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 90/441 (20%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRYPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLEEAQREILLLTLVEKLKSVLSPRMILAQVSGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ +      
Sbjct: 335 CERLPIERIQLRPHCSIGVAMYYGD-LTAEQLYSRAISAAFTARHKGKNQIQFYDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   +IV  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHKFAVWLQPQVEMTSGKIVSAEVLLRIQQPDGRWELPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++ A+  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIESCGLMVAVGHWVLEESCRLLAAWQERGFM--LPLSVNLSALQLMHPNMVPDMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVQVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +AK++   IIA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVDGL-PEDSSMIAAIIMLAKSLNLQIIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|172036159|ref|YP_001802660.1| hypothetical protein cce_1244 [Cyanothece sp. ATCC 51142]
 gi|171697613|gb|ACB50594.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 639

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 103/434 (23%), Positives = 202/434 (46%), Gaps = 30/434 (6%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+ NR+                       + ID+D++K+IND  G  +GD +L+
Sbjct: 216 NYDALTGLYNRRFLNSETRQW-----------QACIYIDLDRFKRINDQRGHELGDKILI 264

Query: 594 SLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           ++     +  +  D +A R  G+ F ++         +   A+++ + I   + +   +I
Sbjct: 265 AVAEIFRDSTRRNDGIAIREGGDEFLLLFPII----DVYSIAVSILQEI-QSLEIEGAKI 319

Query: 653 TVTASIGFASWTS--SKITSSEMLKNAELAMYHAKH-------RGGNHVESFRVSSFRSD 703
           + +  I            +   + + AE A   AK             + + ++++  + 
Sbjct: 320 SASMGIATNDLPECEQDQSIDRLRQIAETAAREAKSDRRSELPNNRIRLWNRQLANQYAR 379

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +++I+  L      +E +LVY PI+ L   EIVG EALI+W  P+ G IS +EF+ +AE 
Sbjct: 380 QMLIESYLRQPGRENERWLVYQPIVSLATGEIVGAEALIRWSSPELGMISPAEFIPVAEA 439

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +   I  +++ +    +  W      P  ++  N+++ +L D    E +   I +   
Sbjct: 440 IGLTYPITDWVVCQGLEQLTQWHS--IKPNFWLSFNLSAAELEDKNFIEQIYQRIIEANI 497

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +P  + L  +E ++  N E  R  L  L+K+ + L +DDFGT  + L  L   PFD +K 
Sbjct: 498 APHLVGLEITERIIYQNLELYRQSLDWLKKMSVRLKVDDFGTGQAGLIQLLQFPFDEIKV 557

Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +    +  +++AI ++I  +A+ ++  ++A+ I      + L+ +G  Y Q  + A
Sbjct: 558 DRSFVPENEADTEKLAICKAIATIAQEMKFNLVAEGIETLKQQEILSNLGYAYGQGYYFA 617

Query: 942 SPLGFNSILKLLKE 955
            P+  +S+ K L+E
Sbjct: 618 KPMMADSLTKQLEE 631


>gi|239623914|ref|ZP_04666945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521945|gb|EEQ61811.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 904

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 175/439 (39%), Gaps = 25/439 (5%)

Query: 521 EQKKSLEGIL--CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            ++ +         ++ D LT   NR  +++        +         +  +D++  K 
Sbjct: 474 ARRHAESQRQLSHMSYFDTLTSFYNRNRYIED-----TNALAHTGKPVGIAYLDVNGLKD 528

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD VLV   RR+  +    D   R+ G+ F II           D   +  
Sbjct: 529 INDQYGHEYGDKVLVECARRMKSVFMGADF-YRIGGDEFVIICPCMK-----KDVFFSKL 582

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRV 697
           + +              A+IG + WT      S+++ NA+  MY  K      H  S R 
Sbjct: 583 RELKAQFQNDPH---YQAAIG-SQWTEKVENLSQIIANADAEMYEDKKEFYRTHPFSHRY 638

Query: 698 SSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                + + +     L   ++ +   +   P I   D   VG EALI++       +   
Sbjct: 639 RHHSDEILHLADPSVLQKEIDQNHFVVYLQPKISSSDRSPVGAEALIRYRSNSDTLVLPG 698

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + EE   I  I+ ++   +   +  W D+       + +N ++  L+     E + 
Sbjct: 699 NFLPLLEEAESISLIDFYVFRFVCAKLKGWIDE-GRQAFPVSVNFSTASLMQPSFVEQLT 757

Query: 816 ALISKTLYSPSRIKLSFSESVV-MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           A+ S    SP  +++  +E V  M + +  + L+ +LR+ G ++ +DDFGT+ + L+ L 
Sbjct: 758 AICSSYHISPGYMQIEVTERVHDMEDLD-IKHLISKLRQAGFTVAIDDFGTEYANLALLS 816

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            + FD +K + S++       K  AI+ SI  +   +   ++A+ I  E     L   G 
Sbjct: 817 EVEFDVLKLDKSMIDNISVNPKTKAIVESISEICTKLGIDMVAEGIETEEQFSTLRSCGV 876

Query: 933 DYIQDSHVASPLGFNSILK 951
              Q    + P+  +   +
Sbjct: 877 GLAQGFLFSRPISTDEYEE 895


>gi|254976354|ref|ZP_05272826.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255093739|ref|ZP_05323217.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255315491|ref|ZP_05357074.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255518154|ref|ZP_05385830.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255651270|ref|ZP_05398172.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260684334|ref|YP_003215619.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687993|ref|YP_003219127.1| putative signaling protein [Clostridium difficile R20291]
 gi|260210497|emb|CBA64988.1| putative signaling protein [Clostridium difficile CD196]
 gi|260214010|emb|CBE06137.1| putative signaling protein [Clostridium difficile R20291]
          Length = 515

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 197/415 (47%), Gaps = 10/415 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           FL  +   +    +++     +   D+ + K IND+ G  +GD+VL ++   +       
Sbjct: 85  FLKHVQNYI---ISNEKENCVMACFDLCRLKLINDIYGYELGDEVLNNILSNLKNYFGKE 141

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL--EREITVTASIGFASWT 664
            I  +L  + F +I+  EN   KI      ++  I +   +   + +I + ASIG   + 
Sbjct: 142 AIYGKLKSDVFVLIIKLENREQKIPYLVNLIKNKIMILSQIDSFKMDINIEASIGIYKFN 201

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
           +++I   + + NA++A   +K         F   +       + I+ DL LA++N E  +
Sbjct: 202 NNEIDIKKAIDNADMARLKSKGLKHIEYVEFDNAMEEEIQSIMKIERDLFLAIKNKEFVI 261

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +      I+G EALI+W HP  G +  ++F+ IAE+  +I  I  ++++ +   I
Sbjct: 262 HYQPKVDSSTGNIIGSEALIRWLHPSLGMVGPNKFIPIAEKNGLINNIGRWLIQEVFITI 321

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W  +     + + IN++  +L  N+L +  + + +        I+L  +E+  + + +
Sbjct: 322 NKWISEGINV-LPVSINLSRVELYKNDLVDFFKLMFNTYNIPKELIELEITETTALRDVK 380

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L  ++ +G++++LDDFG   S    L  IP D +K + SL+       K   +++
Sbjct: 381 FISERLYEIKSLGMNISLDDFGVGNSNFINLKGIPLDIIKIDRSLILDIVTNTKTKFMVK 440

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +II ++ ++  T+I + +     +K L+ +GC++IQ      PL   +  KLL +
Sbjct: 441 AIINLSHDLNVTVICEGVEDMHQVKVLSELGCNFIQGYVFFKPLDEMNYKKLLTD 495


>gi|304310423|ref|YP_003810021.1| GGDEF precursor [gamma proteobacterium HdN1]
 gi|301796156|emb|CBL44362.1| GGDEF precursor [gamma proteobacterium HdN1]
          Length = 664

 Score =  334 bits (856), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 105/698 (15%), Positives = 216/698 (30%), Gaps = 70/698 (10%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +       F++L+  L         + PI +  +   ++  S      +      +    
Sbjct: 1   MTPISLIHFVLLLAVLTCSPLLYAQVNPIELDENSDRINPASQLEFGEDSSNQLTLDDIQ 60

Query: 67  DI-DGISRRIEVS-----ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
                   +  V               W  F + NTS+  + + + + +  L     +  
Sbjct: 61  SAGSTFQWQPNVQQVENINFGYSKTTHWLHFRIKNTSNQIIRKQLEIGYPVLDYLDVYLQ 120

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEP 178
                        +    DR  +  + V  + + P  ++   + +   +     + LW  
Sbjct: 121 HSNGEVRSLSMGDKRPFHDRPVDHRNFVAPLQLQPSDLLDVYLRVRTTSSMQVPMTLWRD 180

Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238
           +       +  L  GI  G   ++ ++    Y+  R +  +        +  +++   G 
Sbjct: 181 STLLSASQAGMLGLGIFYGTMIVMVLYNLFLYLAVREASYLYYVLYVSCMALFLASLNGV 240

Query: 239 LSKL-VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILF 297
             +                    +     +F   +L  +    +V ++    +    I+ 
Sbjct: 241 SYQYLWPESIWWNDQSIPFFLSGVILFSALFTLKFLRLSTTLPRVNHLFTVIVIISFIVM 300

Query: 298 CMSFYYPMVTA-SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
             + + P      +  I      +      +   ++G   A     AW  + I  I L +
Sbjct: 301 AATLFAPYSIMIRVVIIWAVFGTIVGLITGMVRWLQGDTSAKYYCLAWYSLQIGGIVLAL 360

Query: 357 AITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
                L    I   AL  G  L VIL+ F     +       +    + +R +L      
Sbjct: 361 NKFDVLPRIFITEYALQLGSALEVILLSFA----LADRLNTEKRKRYEAQRHAL------ 410

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-Y 474
                     +R+        +        +          H  D    R   D  +   
Sbjct: 411 --------ENERIARLAQAEAL----QQEKNARKAQEKALEHERD---ARKAQDKAIEIQ 455

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R      E RV+                                  E + + + +   ++
Sbjct: 456 RAANETLEHRVKERT------------------------------HELEIANKQLEEQSY 485

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTGI NR+     L      +   + L  ++++IDID +K+ ND  G  VGDD L  
Sbjct: 486 TDGLTGIRNRRYLDQFLAREFASARR-EKLPLSLLLIDIDHFKQFNDKYGHLVGDDCLRI 544

Query: 595 LTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +   I   + +  DI+AR  G  F ++L S + +  +       R+   +   +  + +T
Sbjct: 545 VGTTINSTVRRETDIVARYGGEEFCVLLPSTDQAGAVQVAETIRRRVHDIEFCVNNQNVT 604

Query: 654 VTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGN 690
           +T S+G A+            +  A+ A+Y +KH G N
Sbjct: 605 ITVSLGVATRTPERHHDIEHFIAAADQALYSSKHNGRN 642


>gi|21323805|dbj|BAB98431.1| Diguanylate cyclase/phosphodiesterase domain 2 (EAL) [Corynebacterium
            glutamicum ATCC 13032]
          Length = 1014

 Score =  334 bits (856), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 97/560 (17%), Positives = 217/560 (38%), Gaps = 16/560 (2%)

Query: 398  QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            Q +    E   L    +   +   D   + V        ++G     + G          
Sbjct: 453  QQLTLAYEESRLLFEKAPQGIAMLDPSGEIVMANRSFGDLVGTTPVRLLGRNLEDFGV-- 510

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                +     +   +      +  +  +     +   + +    M N  G I   +    
Sbjct: 511  ---EEGTMEYVTPVLSDPEAVVHLDRSLETLRGKQKNVAMSFSSMGNVGGRIGTLLVNVV 567

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            D+TE+++ +E +   A  D+LTG+ NR+     +  ++  +  D      ++++D+D +K
Sbjct: 568  DVTERQELIELVEHLADHDSLTGLVNRRRLESDIEELILKNERDSTDS-ALLLLDLDYFK 626

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ++ND LG   GD +L+     + + ++  DI+ R+ G+ F I+L    +        I +
Sbjct: 627  EVNDSLGHEAGDQLLIEFAEILKDSVRDSDIVGRIGGDEFVIVLPD-TDRDGAEAIGIRI 685

Query: 638  RKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             + +        + +  V+ SIG   ++ ++         A+  +Y AKH G N V   R
Sbjct: 686  IELVNQHFKGRGKVLSRVSVSIGGTLFSDARAQGVNPFILADQLLYDAKHAGRNRVAVRR 745

Query: 697  VSSFRSDRVMIK---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +            E+L   +E+  + L   PI+ L    +   E L++ +     ++ 
Sbjct: 746  AENTIVRSAKPAFSVEELSEILESHSIRLELQPILELETGRVGAAEGLLRINL-DGTDVP 804

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + +F+   E+  +   +++ ++      I   R     P   + +N++   L   ++ E 
Sbjct: 805  TGQFVQSVEQAGLAPKLDIAVMREGINHIERLRAVC--PTFSLALNLSGYSLSSAKIREE 862

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++A           I+   +E+  + + + ++  +  L+  G  + +DDFG       YL
Sbjct: 863  LRAEFRARDLPRGSIRFEITETAPIEDIDAAKEFVQMLKDFGFHIVIDDFGAGHEPYQYL 922

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                F  +K  G  + G        +I+ SI  +AK+ E   +A+ +  +  ++ +  +G
Sbjct: 923  KKFDFSVLKIAGEFIEGMVTNRVDRSIVESIAQLAKDEEMETVAEFVSSKEILEAVREIG 982

Query: 932  CDYIQDSHVASPLGFNSILK 951
              Y Q  H+      +  + 
Sbjct: 983  VTYAQGFHIGKSKPIDEFIA 1002


>gi|19552261|ref|NP_600263.1| GGDEF family protein [Corynebacterium glutamicum ATCC 13032]
 gi|62389925|ref|YP_225327.1| sensory box/GGDEF family protein [Corynebacterium glutamicum ATCC
            13032]
 gi|41325261|emb|CAF19741.1| SENSORY BOX/GGDEF FAMILY PROTEIN [Corynebacterium glutamicum ATCC
            13032]
          Length = 1018

 Score =  334 bits (856), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 97/560 (17%), Positives = 217/560 (38%), Gaps = 16/560 (2%)

Query: 398  QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
            Q +    E   L    +   +   D   + V        ++G     + G          
Sbjct: 457  QQLTLAYEESRLLFEKAPQGIAMLDPSGEIVMANRSFGDLVGTTPVRLLGRNLEDFGV-- 514

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                +     +   +      +  +  +     +   + +    M N  G I   +    
Sbjct: 515  ---EEGTMEYVTPVLSDPEAVVHLDRSLETLRGKQKNVAMSFSSMGNVGGRIGTLLVNVV 571

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            D+TE+++ +E +   A  D+LTG+ NR+     +  ++  +  D      ++++D+D +K
Sbjct: 572  DVTERQELIELVEHLADHDSLTGLVNRRRLESDIEELILKNERDSTDS-ALLLLDLDYFK 630

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ++ND LG   GD +L+     + + ++  DI+ R+ G+ F I+L    +        I +
Sbjct: 631  EVNDSLGHEAGDQLLIEFAEILKDSVRDSDIVGRIGGDEFVIVLPD-TDRDGAEAIGIRI 689

Query: 638  RKSIAMPINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             + +        + +  V+ SIG   ++ ++         A+  +Y AKH G N V   R
Sbjct: 690  IELVNQHFKGRGKVLSRVSVSIGGTLFSDARAQGVNPFILADQLLYDAKHAGRNRVAVRR 749

Query: 697  VSSFRSDRVMIK---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +            E+L   +E+  + L   PI+ L    +   E L++ +     ++ 
Sbjct: 750  AENTIVRSAKPAFSVEELSEILESHSIRLELQPILELETGRVGAAEGLLRINL-DGTDVP 808

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + +F+   E+  +   +++ ++      I   R     P   + +N++   L   ++ E 
Sbjct: 809  TGQFVQSVEQAGLAPKLDIAVMREGINHIERLRAVC--PTFSLALNLSGYSLSSAKIREE 866

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            ++A           I+   +E+  + + + ++  +  L+  G  + +DDFG       YL
Sbjct: 867  LRAEFRARDLPRGSIRFEITETAPIEDIDAAKEFVQMLKDFGFHIVIDDFGAGHEPYQYL 926

Query: 874  GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
                F  +K  G  + G        +I+ SI  +AK+ E   +A+ +  +  ++ +  +G
Sbjct: 927  KKFDFSVLKIAGEFIEGMVTNRVDRSIVESIAQLAKDEEMETVAEFVSSKEILEAVREIG 986

Query: 932  CDYIQDSHVASPLGFNSILK 951
              Y Q  H+      +  + 
Sbjct: 987  VTYAQGFHIGKSKPIDEFIA 1006


>gi|254481260|ref|ZP_05094505.1| conserved hypothetical protein [marine gamma proteobacterium
            HTCC2148]
 gi|214038423|gb|EEB79085.1| conserved hypothetical protein [marine gamma proteobacterium
            HTCC2148]
          Length = 1317

 Score =  334 bits (856), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 200/434 (46%), Gaps = 15/434 (3%)

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
              D+LT + NR++FL ++   L  +    N R  V+ IDID++K +N++     GD VL+
Sbjct: 884  NHDSLTKLINRETFLGQMGQALRHAQL-KNSRHAVLYIDIDQFKLVNEIYDEVSGDAVLL 942

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
              +R + +L       AR+  ++F ++L+      +    A  +R++I    I L    +
Sbjct: 943  EFSRLLAQLHGKKSSSARIENDQFAVLLLD-RELDQAMQLAERVRQNIEAGSIELDGESV 1001

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-----RSDRVMI 707
            + T SIG A       +  ++L++A  +M  AK +G N V+ +           +D+   
Sbjct: 1002 SFTVSIGVAPILEYSPSVDQVLESARTSMEIAKEQGRNRVQRYEEDQALATSFNNDKSKT 1061

Query: 708  KEDLCLAVENSELYLVYHPIIRL----MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            K+DL  A+      L   PI+++            E L+   +P     S  EF+  AE 
Sbjct: 1062 KQDLEQALATDRFVLRAQPIMQVSVEGKQPTGRHYELLLGLANPDGSLASPEEFIQSAER 1121

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
               +  ++ ++++   R +    D+    P  + IN++   + D++  E +   IS+   
Sbjct: 1122 YGFMNLVDRWVVQEAFRWVSQLMDEEKEVP-NLAINLSGGSVTDDDFMEYLLEQISEFGV 1180

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              S I    +E+  + N  ++   +   R IG   ++DDFGT  +  +YL  +P D VK 
Sbjct: 1181 GTSHICFEITETGTISNLVKAADFVRAFRNIGCKFSIDDFGTGLASHNYLRELPVDYVKI 1240

Query: 884  NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +G+ +TG  + R   A+ RSI  +A  +    IA+ +  +  I++L  +G DY+Q   V 
Sbjct: 1241 DGTFVTGIHKNRADYAMARSINDLAHFLGQETIAESVENDQIIEKLHEIGVDYLQGWGVG 1300

Query: 942  SPLGFNSILKLLKE 955
             P     + + L  
Sbjct: 1301 MPKLLTEVTEDLSN 1314


>gi|159185651|ref|NP_357395.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
 gi|159140785|gb|AAK90180.2| GGDEF family protein [Agrobacterium tumefaciens str. C58]
          Length = 664

 Score =  334 bits (856), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 101/441 (22%), Positives = 202/441 (45%), Gaps = 19/441 (4%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +QK + E    +L  +  D+LTG+ NR++    L  +L  + +       V++ID+D +K
Sbjct: 214 QQKAADERGQALLRLSNTDSLTGLQNRRAIDHHL-RLLWDNWSKKGEGFAVLLIDVDFFK 272

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIA 636
           K ND  G   GD  L+++   + + +      + R  G  F +++    +  ++ + A  
Sbjct: 273 KYNDRYGHQEGDKCLMTVGNALQDAIIDHGASIGRYGGEEFIVLVP-FKSKQQVGELAET 331

Query: 637 MRKSIAMPINLLERE----ITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNH 691
           +R ++       ++       VT SIG +    +      +++  A+ A+Y AK  G N 
Sbjct: 332 IRHTVEELSLAHDQRRDGTFIVTVSIGASFTRPNPDGKLEKIINEADRALYIAKGNGRNC 391

Query: 692 VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           ++ F         +   I   L +A+  + + LVY PI+ +   E  G+EAL++      
Sbjct: 392 MKLFDPEDPQTSDETENIAALLKIAIAENLVSLVYQPILNVSTNETAGVEALMRLRLLDG 451

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             +S   F+ IAE    I  + L+ ++ + + +      A+     + +N++   L +  
Sbjct: 452 NLVSPGIFIPIAERTGTIMELGLWTIKTVCKQL-----LADDRVDVVSVNVSPMQLKNPG 506

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               + A++ +   + +R+    +E V M         L  L+ +GI++ LDDFGT  + 
Sbjct: 507 FATSVAAILVEAGIAGNRLAFEITEGVDMEMHSDVLRCLSDLKTLGINIWLDDFGTGFAG 566

Query: 870 LSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           LS+L    FDTVK + S +  S   +  A+L+ +I + +N    I+ + +  E  ++ + 
Sbjct: 567 LSWLRMTDFDTVKIDRSFLQDSNTPRGRAMLQDMIRLIRNRGHNILIEGVETEDQLRLVR 626

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
           +M  DY Q  ++  P+    +
Sbjct: 627 QMEIDYAQGYYIGRPVVAERL 647


>gi|308188822|ref|YP_003932953.1| Protein yhjK [Pantoea vagans C9-1]
 gi|308059332|gb|ADO11504.1| Protein yhjK [Pantoea vagans C9-1]
          Length = 691

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 197/436 (45%), Gaps = 13/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +        +T +PNR  FL  +   +     +      +MVI I+  ++ N VL  
Sbjct: 258 HDEMSRLTTHFAVTDLPNRTLFLALVEQFM----CNPEQPLGLMVIRIETLQEANGVLSD 313

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D ++++L  +I   L    +LA+   + F +++   +N  +    A  +   +  P+
Sbjct: 314 EQRDTLMLTLVEKIRHTLDDHTLLAQTGVSDFVLLMKRASNPFRALRLARNLMIRLNQPV 373

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           NL + ++    SIG A      ++++E+L  A  AM  A+H+G N +  F  +     + 
Sbjct: 374 NLHQLQLRPNVSIGLALRDDRPLSANELLDRATSAMMSARHQGKNQILFFDAALTERAQK 433

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+   + + +  L   P + +    + G EAL++   P      + EF+  AEE
Sbjct: 434 RLTQEHDILQGLHDEQFALYLQPQVDMRTGTLTGAEALLRMRQPDGSYGLTEEFIASAEE 493

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I AI  ++ E   R +  W+ Q  M  + + +NI++  L D  +   +Q+L+++   
Sbjct: 494 IGVISAIGRWVFEEACRILAGWQRQGIM--LPLSVNISAVQLRDTGVVSHLQSLLARHRI 551

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPFDT 880
           +P  + L  +E+  + + E++ L+L  L++ G+++ LDDFG   S L+YL     +P + 
Sbjct: 552 APGTLVLEVTETAQLDDAEQAILMLRLLQQTGVAVALDDFGMGYSNLNYLHQLKALPVNK 611

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K + S +         ++R +  +A+ I   +IA+ +        L   G    Q    
Sbjct: 612 LKMDRSFVAALPHDD-TMVRIVAAIAEIIHLEVIAEGVETAEQRDWLLARGIAIGQGYFY 670

Query: 941 ASPLGFNSI-LKLLKE 955
           A  L  +      ++ 
Sbjct: 671 AEALPVSRFNETWIEN 686


>gi|320182591|gb|EFW57481.1| Protein yhjK [Shigella boydii ATCC 9905]
          Length = 662

 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P         F+ 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGFID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|99080149|ref|YP_612303.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
 gi|99036429|gb|ABF63041.1| diguanylate cyclase/phosphodiesterase [Ruegeria sp. TM1040]
          Length = 499

 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 189/437 (43%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG      F   +  + D +     L+  ++V++ID++  +    G   GD V+  
Sbjct: 57  RDELTGFLLAPGFETHVRDVFDRT-EGTGLKSALVVVEIDEFDALVAAHGQDAGDIVMQR 115

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
           +  R+  +L+  D +ARL  NRF I L      +       A  ++  I  PI      +
Sbjct: 116 VGERMRSILRHRDTIARLGRNRFAICLTPIMQLDLELCIQLAGRLQFRIEEPIKFGGTSL 175

Query: 653 TVTASIGFASWTSSKITS-SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            V+ SIG          + S  L  A  A+  A   G + + ++   +         + E
Sbjct: 176 FVSCSIGICQRHRVPKDAGSSWLDCAVAALDEALVVGPSSIRAYSSDTHVHLDRTVNLME 235

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D   A++N  +   + P I      + G EAL +W HP  G I  S F+   E   +++ 
Sbjct: 236 DAASALQNGMIQAWFQPQICTDTGRVSGFEALARWCHPVKGMIPPSAFLPALEHAGLLQK 295

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  M+E+    + SW       P  + +N A+ +L D  L   ++  + +   +P R+ 
Sbjct: 296 LSQVMVEQALTALKSWDAAGLKVP-TVGVNFATDELRDPGLVNRIRWELDRFGLTPDRLT 354

Query: 830 LSFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L ++G  + LDDFGT  + ++ +       +K + S +
Sbjct: 355 IEVLETVMTDQPDEVVARNITALGEMGCHIDLDDFGTGHASIASVRRFRVSRIKIDRSFV 414

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ ++   +A+ +    +   L ++GCD++Q   +  P+ F
Sbjct: 415 TKADHDPEQQKMITAILTMAERLDLKTLAEGVETAGEHALLAQLGCDHVQGFGIGRPMPF 474

Query: 947 NSILKLLKERFPLVKNT 963
           +  +  +      +++ 
Sbjct: 475 DQTIDWVINHEAKLQDA 491


>gi|124515772|gb|EAY57281.1| Diguanylate cyclase/phosphodiesterase with GAF sensor
           [Leptospirillum rubarum]
 gi|206602277|gb|EDZ38759.1| Diguanylate cyclase/phosphodiesterase with GAF sensor
           [Leptospirillum sp. Group II '5-way CG']
          Length = 988

 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 103/433 (23%), Positives = 205/433 (47%), Gaps = 9/433 (2%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               +  D+LT +PNR+ F DR    ++           + ++D+D +K +ND LG   G
Sbjct: 411 YTHLSLFDSLTDLPNRRLFQDRTAQAIERYRR-KREPFVLGILDLDGFKFVNDRLGHPAG 469

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D +L+ +  R+  +L+  D LARL G+ FG++L     S   +D    +  S+++P +  
Sbjct: 470 DRLLILVAERLKAILRSTDTLARLGGDEFGLLLAGVEGSGG-SDLFDRIIHSLSIPFSHE 528

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVM 706
           +  I+++ SIGF         +  + K+A++A+Y  K  G N  ++F +      + +  
Sbjct: 529 KESISISGSIGFTVVPPDDADAETLFKHADIALYQVKEHGKNGWQAFSIFMAESLNKQHS 588

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ +L  ++  +     Y P   L   ++VG+EAL++W+HP  G + +  F+   E+   
Sbjct: 589 MQLELVSSIRENRFVFHYQPQAELRSGKVVGVEALLRWNHPAKGLLEAGSFIRTLEDCDA 648

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSP 825
           I     + LE I R    WR Q    P+ +  NI+ + LL       ++    +    SP
Sbjct: 649 ILETEQWGLEEILRQSDLWRRQGLNLPVRM--NISCRSLLSGRFPSDLKNAFGRYPRLSP 706

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S ++L  S++ +  +  + + ++   R  G+S ++ + G +   LSYL  +  D V    
Sbjct: 707 SLLELDISDTKLFRDIRKVKGVVDECRITGVSFSIGNLGNEQGALSYLQTLGIDRVTIPR 766

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +     +   +AI+ S+I  A+ +    + + I  E +   L + GC   Q + ++ P
Sbjct: 767 NFVKNLEKSPNDMAIVASLITSARLLLVDAVGEGIETEQEGLHLLQWGCQIGQGNAISPP 826

Query: 944 LGFNSILKLLKER 956
           +  + I + ++  
Sbjct: 827 IPPDKIPEWIRSY 839


>gi|323154037|gb|EFZ40243.1| protein yhjK [Escherichia coli EPECa14]
          Length = 681

 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 250 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 304

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 305 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 364

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 365 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 423

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 424 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 483

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 484 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 541

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 542 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 601

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 602 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 660

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 661 GFLFARPLPIEIFEESYLEEK 681


>gi|88859990|ref|ZP_01134629.1| predicted signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas tunicata D2]
 gi|88817984|gb|EAR27800.1| predicted signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas tunicata D2]
          Length = 834

 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 98/450 (21%), Positives = 200/450 (44%), Gaps = 23/450 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +     +  D + G+PN       L   L L+        T++      Y      
Sbjct: 388 RVKEQKHQYLSTHDPVCGLPNHIVLNKALAQ-LHLAGRAH----TLLFFKPYTYTTTRAN 442

Query: 583 LGIAVGDDVLVSLTRRIGELLK-------------FPDILARLSGNRFGIILISENNSLK 629
            GI   ++ L+ L  ++ + L                  + R +   F +++ ++   L 
Sbjct: 443 FGIVHANEYLIELCFQLNDKLDGLNMFIFEERNQGSSVFICRFNDETFALLIDTKIEELL 502

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRG 688
           I  +   +++++   I L    +     IG AS+    +++  +++ A  ++   A    
Sbjct: 503 IEQYVSNIKEALEQGIYLDGTYLVGQVDIGIASYPVHALSADLLIQRALQSLQFAAGEVD 562

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              +      +   +R+ +  DL  A+ N+E  L + P I L +  I G EAL++W HP+
Sbjct: 563 HWCLYQQDTDALMRNRLKLAADLHQAIANNEFSLYHQPQIDLRNNSIYGSEALLRWKHPE 622

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I   EF+ +AE   +I  I  +++E+    +      +++P   I INI+++DL   
Sbjct: 623 LGFIPPDEFIPVAESAGLINEITEWVVEQAL--LHHKHILSSLPSHKISINISARDLNKR 680

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           EL   +  L+++    PS I +  +ES  + +   ++ +L   +++GI + +DD+GT  S
Sbjct: 681 ELPVQLLTLLTELNIKPSSIVIELTESATVKDKTEAKNVLDDFKEMGIKVAIDDYGTGYS 740

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+YL  + F  +K +   +      R    I ++ I MAKN++  ++A+ +  E+  K 
Sbjct: 741 SLAYLSQLGFHEIKIDKQFVFNLESNRRHQTICKTTIEMAKNLDAYVVAEGVESELVAKM 800

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L + GC+  Q  + + P+ F+   + L+  
Sbjct: 801 LRQYGCEIAQGYYFSKPMPFSEYCQWLERY 830



 Score =  134 bits (337), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/399 (11%), Positives = 122/399 (30%), Gaps = 23/399 (5%)

Query: 13  KAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI-DGI 71
           +    + +F       + +   ++I++   V D      ++ +      +       + +
Sbjct: 6   RLLAFIFVFFGCFYPFTLSAFELSIANGQLVND---EIAVFHDASNKLSINQLIQPHEDL 62

Query: 72  SRRIEVSASSIRHR-GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISV 130
                VS + +      W    L N    Q + ++ + +  L    F+          + 
Sbjct: 63  PFESIVSIAQVNASESLWLKLTLTNRDIQQRDFVVHLDNPSLELIDFYLVKDKQLIDSAT 122

Query: 131 TP---SEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNFYKDTV 185
                       +            +   +  T  + + +  LP   +YL     +  TV
Sbjct: 123 LGRHKHIAPISSKAFPHLLS----NLPANSSATLFIRVKSNGLPHVPVYLHSIASFDQTV 178

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNL 245
           N      G+ IG+  L+  +    ++ +RS M +   +     L    +  G++  ++  
Sbjct: 179 NVEFALWGVYIGIVLLMLFYNGALFIYSRSYMYLYHSSFLISALLVTGLSHGYIYFILPD 238

Query: 246 PSGELLIWRACS-EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                L+ +  S +  ++   I+F   +L  +            G     + F ++    
Sbjct: 239 DLVFKLVGQDVSFKFLMAGFAILFAVEFLKSHSQQPM--RSVLVGQYFSFLCFILALICI 296

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYER----AVLLIPAWILIFIWFIGLWMAITK 360
            +        +    + +   + +     Y      +   I +W+ I+   + + +    
Sbjct: 297 FLPEQFNNQLITVSQVAFYGLMTWILSNSYSNKERWSKTFIISWLPIYYASLIVPLNYYG 356

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            +  D +       ++ IV+ +    + H        Q 
Sbjct: 357 VVPYDHLMT--NSFMLAIVLQVALITLAHAERYRVKEQK 393


>gi|319935825|ref|ZP_08010253.1| hypothetical protein HMPREF9488_01084 [Coprobacillus sp. 29_1]
 gi|319809180|gb|EFW05635.1| hypothetical protein HMPREF9488_01084 [Coprobacillus sp. 29_1]
          Length = 634

 Score =  333 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 95/442 (21%), Positives = 198/442 (44%), Gaps = 23/442 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           QK+  E +   A  D LTGI N+ +F ++   IL+ +  D      ++ ++I++++ IND
Sbjct: 209 QKRETEILREKAELDRLTGIYNQSTFYEKAREILNQNEED----FCLIYMNINRFQVIND 264

Query: 582 VLGIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           + GI  GD +L  + + + + +      ++ RL+ + F I+      +         +  
Sbjct: 265 LYGIEEGDRLLAYIGKYLKDYMNNHSHTLVCRLTTDHFLIL-----TTQSEYKKNKKIDI 319

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
               P+     +       G        ++   M   A +A    K+R  N  E +    
Sbjct: 320 LKDYPL-----DFNSALRFGIYFIEDKSLSVHIMADRAAMAAKSIKNRYINQAEVYNEEQ 374

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +      MI +++  A+   ++ +   P   + +  I+G EAL++W HPK G IS S F
Sbjct: 375 RQIILQEQMIMDEIQTAILQEDILIYVQPKYDIENNMIIGGEALVRWLHPKHGLISPSVF 434

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+  +I  ++ F+ E+  + +   ++      + I INI+  +   N L   +  L
Sbjct: 435 IPVLEKNGLITQLDDFVWEKTCQLLRELKNM--HCLLPISINISRLNFYRNHLPLLLLDL 492

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + L  +ESV   + E    ++  L+++G  + +DDFG+  S LS L   P
Sbjct: 493 VHKYELQPQDLHLEITESVYSKDTEVIYSVIEELQQLGFVILMDDFGSGYSSLSMLKDAP 552

Query: 878 FDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +     +    ++  AI+ +I+ ++  ++ ++I + +  +  +  L ++   Y 
Sbjct: 553 VDIIKLDMGFLSLKDDMKRSYAIIEAIVDLSYTLDLSLIVEGVETKEQVAFLQKIHAQYA 612

Query: 936 QDSHVASPLGFNSILKL-LKER 956
           Q  + + P+     + L L+  
Sbjct: 613 QGYYFSKPVPVKDYINLCLENH 634


>gi|154174751|ref|YP_001409164.1| sensor histidine kinase PAS domain-containing protein
           [Campylobacter curvus 525.92]
 gi|112802181|gb|EAT99525.1| sensor histidine kinase, PAS domain [Campylobacter curvus 525.92]
          Length = 921

 Score =  333 bits (855), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 107/577 (18%), Positives = 222/577 (38%), Gaps = 42/577 (7%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLG------SGDIVWDWDIVRDRVTTTPDIATIL 438
           T+ Q++       + +  + ++ ++ +        S  +V  +D              +L
Sbjct: 374 TIAQNINEIIREKERLNFEKKQSAILLAQYKNSIDSSAVVLRFDTRDMITFVNGAFCELL 433

Query: 439 GLASGSMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            ++   + G     L    ++          + +     +   Q   +    D     + 
Sbjct: 434 DVSKKQLIGKPNEILLNKGLNYEILKQISQKIWA-----KHEWQGVIKTYKKDGSVCSLK 488

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             I P+ + + +IL ++ I  DIT      E +  +  QD LT +PNRQ+ +D+L+    
Sbjct: 489 TSITPILSGDDEILEFVCICQDITLLIAQQEKLQNH-LQDPLTKLPNRQALIDKLSE--- 544

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGN 615
                      V   DI K+K+IN+  G   GD +L+ L+  +  L++  ++ L RL+ +
Sbjct: 545 -----GEGGVFVANFDILKFKQINEYYGFETGDLILIKLSNAVRRLMENKNLELYRLTND 599

Query: 616 RFGIILISEN-NSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEM 673
            F ++    + N      F   + +      + +   +  +  + G         +S   
Sbjct: 600 NFALLGREPDFNKESFFKFCEQVIEYFKNEALGIKNNKFYIDLAFGI--------SSDMH 651

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           L  AE+A  +AK      V            V + ++L  A+E   + L    I+     
Sbjct: 652 LITAEMAKDYAKETKTPIVVFEEKKDKLISNVNLTQNLKRAIEEDRIVLYKQAIVDNTSN 711

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           +++  E LI+        I   +F+ IA+   + + +   ++E+  +      D+     
Sbjct: 712 QVIKYECLIRMIDEDRNVILPIDFLGIAKNSNLYQKLTDIVIEKSFKHFSQNSDEF---- 767

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
               IN+A +D+L  +  E  +A + K      R+ +   E   + N ++    +  +RK
Sbjct: 768 ---SINLAIEDILSPKFLEFFKAKLQKYENIGRRLTIEVVEDEGIENFDKVNHFINEVRK 824

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIET 911
            G  + +DDFGT  S   YL  I  D +K +GS++    E      ++  ++   K    
Sbjct: 825 FGCKIAIDDFGTGYSNFEYLMKIKADYIKIDGSMIQNIDENEESRKVVELMVEFTKRFGI 884

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             IA+ ++    +  +  +G D  Q  +   P    +
Sbjct: 885 KTIAEFVHSNTILNTVNAIGIDASQGFYFDKPKPLEA 921


>gi|303327580|ref|ZP_07358021.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. 3_1_syn3]
 gi|302862520|gb|EFL85453.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. 3_1_syn3]
          Length = 755

 Score =  333 bits (855), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 183/461 (39%), Gaps = 25/461 (5%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGI--PNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
              I+ + +    +   AF D LTG+   NR            L   + +    +   DI
Sbjct: 306 VRVISNRYRG--ELERLAFVDPLTGVRNANRLKMD-----ASSLVRHNPDQVFAIWYADI 358

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             +K  N++ G  +GD  LV +   +        +  R+S ++F  I    ++  + +  
Sbjct: 359 KNFKFYNEMFGYEMGDRELVRIAGLLAACDGPLSLCCRVSADKFAGIRP-MSDREEFSQE 417

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKI---TSSEMLKNAELAMYHAKHRGGN 690
              + K I      L R   +   +G     ++     +  +ML  A +A+  AK    +
Sbjct: 418 FQRLCKRIENDAARLSRAFPLVLHVGVYGTDTAGSGELSFMDMLNRANIALRVAKEGRSD 477

Query: 691 HVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHP 747
               +           +  +  +  A+  S+  L + P + + +   + G E L +W   
Sbjct: 478 TCVFYSEDMRGLVLRQLDIESRMENALRGSQFKLYFQPKVDIQNGNCVHGAEVLARWLDG 537

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               +   +F+ + E    I  ++ +M  +    +   R ++   P+ I +N++   ++ 
Sbjct: 538 DR-LVPPCDFIPLFERNGFIVQLDRYMFSQACAWLQQ-RIRSGKEPLNIAVNVSRLSIMQ 595

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           ++  +    +  +       ++L  +ES+ + + ER R L+  L+K G   +LDDFG   
Sbjct: 596 DDFLQYYSNIKERYAIPDDLLELECTESLALFD-ERFRELVLELQKRGFRCSLDDFGAGF 654

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L  +P D +K +   +      ++   ++ ++I MA+ +    +A+ +     ++
Sbjct: 655 SSLNVLKELPIDVLKLDMLFLRKSQDLKRERIVVSNVIAMAQQLSIRTVAEGVESAEQVE 714

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLL----KERFPLVKN 962
            L   GC+ +Q    A P+       LL        PL +N
Sbjct: 715 FLRAKGCNLVQGYVFARPMPEADFEALLDSLGDRAMPLAQN 755


>gi|298488401|ref|ZP_07006432.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157026|gb|EFH98115.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 607

 Score =  333 bits (855), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQALASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 223 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPTEEQDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLASGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDDIRRLVKQWGCDEGQGYLISKPMEA 577

Query: 947 NSILKLL 953
            ++L  L
Sbjct: 578 EAVLNWL 584


>gi|257482094|ref|ZP_05636135.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011435|gb|EGH91491.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 607

 Score =  333 bits (855), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQALLSSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 223 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPTEEQDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLASGVCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLNWL 584


>gi|331085790|ref|ZP_08334873.1| hypothetical protein HMPREF0987_01176 [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330406713|gb|EGG86218.1| hypothetical protein HMPREF0987_01176 [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 1417

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 189/437 (43%), Gaps = 25/437 (5%)

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             + I  +KK           D LTG+ N  SF    ++       ++     +++ DI+ 
Sbjct: 990  LHSIDAEKKLDYNFW----HDALTGLYNLASF----SSYTKKRHFEELSSVGLVLADING 1041

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K+IN+ +G + G+ VL+   R   E         RLSGN F II  + +       F  
Sbjct: 1042 FKQINNTMGYSFGNQVLLDTARVFREYF-PDAYHFRLSGNEFCIICENASGK----YFYQ 1096

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +    A PI L    I+             ++  S +   AE +M   K +       F
Sbjct: 1097 QISLLQADPIVLRHDGISFGYHWM-----QKEVDFSILKSLAEDSMMEEKQKYYMETPYF 1151

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +       DL    +     +   P + L   +++G EALI++ H + G I+  
Sbjct: 1152 AKRHRPTILQQTLRDL----KEERFLIYLQPKVDLSSRKLIGAEALIRYRHEERGLIAPD 1207

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+   E+  +I+ I+LF+LE+  R +  W+ + +     I IN +   L++ E+   + 
Sbjct: 1208 FFIPPLEKEHLIRYIDLFVLEQACRLLGRWQQEGHKT-FPISINFSRITLMEEEILPSLL 1266

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             L+     SPS I++  +E++   + +    L  +LR+ G ++ LDDFGTK + LS L +
Sbjct: 1267 ELVHTYQISPSLIQIEITETIEEKDCDVLLTLSHQLRQAGFTIALDDFGTKYTNLSILTH 1326

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            + FD +K + SL+           I++ +I M K +   +IA+ I  E     LT MGC 
Sbjct: 1327 MDFDVLKLDRSLIQTLCFRASNQTIIKHVIQMCKELPVEVIAEGIENEEQAALLTSMGCP 1386

Query: 934  YIQDSHVASPLGFNSIL 950
              Q     +P+  +   
Sbjct: 1387 SAQGYLFGAPMPISEFE 1403



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 13/250 (5%)

Query: 456 IHINDRDNFRTILDSF-----VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           IH  D   F                   L+ E+R      +  W+      M +     +
Sbjct: 452 IHRKDYPKFLETFSRKNLLANYANGIQELKLEYRHLTNFGKTCWVETTAHMMKDPVSGDI 511

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +   +DI   K+    +   +  D LT + N+ +    + + L+ S    +     ++
Sbjct: 512 RCLLYLHDIDAAKRERLTLENASRLDPLTKLYNKGAAETLIRSQLEAS--SPDACHAFII 569

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +KKIND+ G A GD VL    +RI +  +  DI+ R+ G+ F   + +  +   +
Sbjct: 570 IDLDHFKKINDLHGHACGDKVLKETAKRIQQHFRSDDIIGRIGGDEFIAFIKNIPSKDFL 629

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +R        ++     +T S+G    ++       + + A++A+YH+K RG N
Sbjct: 630 IQKLEKLR------YTVVPFRGILTYSMGICLTSNYGFDFEVLYEKADIALYHSKARGRN 683

Query: 691 HVESFRVSSF 700
               +     
Sbjct: 684 CFTFYTSVMH 693



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 2/142 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           VI  +       Q +  + ER  +AV  +  +++D+ I + +V  + +   + GL    M
Sbjct: 251 VIIDITKRRLSEQELAINEERFRIAVTQTQSVIFDYHIQKKQVVHSKETMHLYGL-PEIM 309

Query: 446 HGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +    ++    I           +   +            + AAD +++W  I +  + N
Sbjct: 310 NDVPESFVRSKIIPRKHAAAFLSMYREIQQGSPHSSCTVEILAADGKYYWNTITMTTVFN 369

Query: 505 SNGDILRYIGIANDITEQKKSL 526
                +R IG+  +IT+ K+  
Sbjct: 370 GQHKPVRAIGVVENITQHKEME 391



 Score = 57.7 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 428 VTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
           +        + G  S  M   + N  +  I   D  +   I++     +    ++E R+ 
Sbjct: 164 LYGNDSFYQLYGYTSAEMQTQLGNKLIATILPEDATSIMEIIERTYRSQESHFEFEQRIF 223

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
             D    +++       +  G       +  DIT+++ S + 
Sbjct: 224 HKDGSIRYLLTNGAFSHSRKGVPT-LNCVIIDITKRRLSEQE 264



 Score = 54.6 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 429 TTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
             +  +  +LG  S   +        +  IH +DR+     + S +   +   + ++R+ 
Sbjct: 42  FISDQLLHLLGFESREEYCTFIKNKLINGIHPDDREYTTDTVLSALNEDQ-TYEIKYRML 100

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             D  F W+I + +   + N +      I  DIT+  +  + +     
Sbjct: 101 KKDGSFIWVIGQGKKFFHKNSE--FVASICLDITDTIELQQELSELTH 146


>gi|237728845|ref|ZP_04559326.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909467|gb|EEH95385.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 657

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 192/434 (44%), Gaps = 14/434 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E     A +  ++ +PN+   +  L  ++    T       +M++  +  +    V
Sbjct: 221 QRHSEEQSDFAMRFPVSELPNKSFLMGLLEQVVTRQQTT-----ALMIVTCETLRDTAGV 275

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           L     + +L++L  ++  +L    +L+++SG  F II                +   + 
Sbjct: 276 LTETQREILLLTLVEKLKSVLAPRMVLSQVSGYDFAIIAHGVKEPWHAITLGQQVLTIVN 335

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             + +   ++  T +IG A +    +T+ ++ + A  A+  ++H+G N ++ F       
Sbjct: 336 ERLPIQGIQLRPTCNIGVAMFYGD-LTAEQLYRRALSAVLTSRHKGKNQIQFFDPLQMEE 394

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +  +  + D+  A++N +  L   P + +   +++  EAL++   P          +  
Sbjct: 395 AQQRLTEENDILSALDNQQFALWMQPQVEMSSGKVLSAEALLRMQQPDGSWELPEGLIDR 454

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   +  L+++
Sbjct: 455 IESCGLMVTVGYWVLEETCRQLSAWQERGLM--LPLSVNLSALQLMHPSMVSDLLELLNR 512

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IP 877
               P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +P
Sbjct: 513 YRIKPGTLILEVTESRHIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSLP 572

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            D +K +   + G   +  +++ +II +A ++   +IA+ +  E   + L++ G +  Q 
Sbjct: 573 VDVLKIDKMFVDGV-PEDCSMISAIIQLAHSLNLQMIAEGVETEAQREWLSQAGVEVAQG 631

Query: 938 SHVASPLGFNSILK 951
              A P+  N   +
Sbjct: 632 FLFARPVPANIFEE 645


>gi|325499085|gb|EGC96944.1| phosphodiesterase [Escherichia fergusonii ECD227]
          Length = 660

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 189/435 (43%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 MQRHYEEQNENALRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    +LA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMVLAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +++ ++  +A  A + A  +G N ++ F      
Sbjct: 346 NERLPIESIQLRPSGSIGVAMFHGD-LSAEQLYGHAVSAAFTAMRKGKNQIQFFEPKQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  L   P + +   +++  E L++   P          + 
Sbjct: 405 AAQQRLTEESDILNALENHQFALWLQPQVDMTSGKVLSAEVLLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++    P  + +N+++  L+   +   +  L+S
Sbjct: 465 RIESCGLMVTVGQWVLEESCRLLSAWQERGINMP--LSVNLSALQLMHPNMVPELLGLLS 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRVQPGMLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++R+II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PVDVLKIDKMFVEGL-PDDDSMIRAIIMLAQSLGLEMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK 951
               A  +  +   +
Sbjct: 642 GFLFARAVPIDLFAE 656


>gi|257790840|ref|YP_003181446.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
 gi|257474737|gb|ACV55057.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
          Length = 735

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 180/424 (42%), Gaps = 16/424 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+  +++F D     L  S   D    +++  D+D +K  ND+ G+  GD++L  L
Sbjct: 29  DAATGLLGKEAFFDEAAAYLRHSGARD---VSIVCFDVDHFKLFNDLHGLDCGDELLRYL 85

Query: 596 TRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            R +           LARL+ + F +         ++    + +              I 
Sbjct: 86  GRALALRFSPDGAQPLARLAADTFALCATGIR-PERVERILVDISSECP-------NGID 137

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711
                G           S M   A +A+   K    + V  +      +  +  +    +
Sbjct: 138 AIVRAGVYRIEDPASPVSIMCDRAVIALRTVKGSYFDRVALYDPGMREALVLEREVVAGI 197

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+    + L   P   +   +IVG EAL +W HP+ G ++  EF+ + E   ++ +++
Sbjct: 198 ESALREDRIELFLQPKCNIRTGKIVGAEALARWRHPERGIVAPGEFIPLIERNGLVCSLD 257

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E+ A  I    D+  + P+ + +N++  D+   ++   + AL+ +    PS I++ 
Sbjct: 258 LRVWEKTAAWIRGLIDE-GVQPVPVSVNVSRADIYLVDVAAELHALVERYGIEPSLIEVE 316

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES     P+R       L + G ++ +DDFG+  S L+ L  I  D +K +   +   
Sbjct: 317 ITESAYSERPDRIVAAFDELAERGFTVLMDDFGSGYSSLNMLKDINVDVLKIDMRFLDRD 376

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +   I+ S+I MA+ ++  +IA+ +     +  L  +GC Y Q  + A P+   +   
Sbjct: 377 DRRSKDIMESVIRMARWLDLPVIAEGVETREQVNFLLDVGCSYAQGYYYARPMEAAAFEA 436

Query: 952 LLKE 955
           LL +
Sbjct: 437 LLTD 440



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  +  V     + + +    +R  + +  SG +V++ DI       +  +    GL + 
Sbjct: 581 YGSVTDVTERMEYMEALRKSEQRFEMTLEASGTVVFELDIPTRTARYSEFLQQAFGL-AE 639

Query: 444 SMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           ++      ++    +     ++FR I          R     R    D    W  + +  
Sbjct: 640 TVANAPEGFIEQGTVAEESIEDFRAIYRDLYAG-APRTSAVVRAIMGDGSRAWNRVTLLA 698

Query: 502 MSNSNGDILRYIGIANDITEQ 522
           M N  G  ++ +G+  ++T +
Sbjct: 699 MPNEAGAPVKAVGLVENVTRE 719


>gi|291615686|ref|YP_003518428.1| YhjK [Pantoea ananatis LMG 20103]
 gi|291150716|gb|ADD75300.1| YhjK [Pantoea ananatis LMG 20103]
          Length = 669

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 101/440 (22%), Positives = 192/440 (43%), Gaps = 14/440 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +        +T +PNR  FL  L   +           ++MVI I+  ++ N VL  
Sbjct: 235 HDEMSRLTTHFAVTDLPNRALFLALLDQFISSRRQ----PFSLMVIRIETLQEANGVLSD 290

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D ++++L  +I   +    +LA+ + + F +++ S NN  +    A  +   +  P+
Sbjct: 291 DQRDTLMLTLVEKIRSTIDDHTVLAQTTTSDFVLLMKSANNPFRALRLARNLMIRLNQPV 350

Query: 646 NLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           NL + ++   ASIG A     +   + EML  A  AM  A+ +G N +  F  +     +
Sbjct: 351 NLHQLQLRPNASIGLALGEEGESMGAGEMLDRATSAMMSARRQGKNQILFFDAALTERAQ 410

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +  + D+   + + +  L   P I +    + G EAL++            EF+  AE
Sbjct: 411 KRLTQEHDILQGLHDEQFALYLQPQIDMQTGRLAGAEALLRMRQADGSYGLPEEFIASAE 470

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E+ +I AI  +++E   R +  W+       + + INI++  L D  +   + AL+ +  
Sbjct: 471 EIGVISAIGRWVVEEACRILAGWQRHG--VTVPLSINISAVQLRDASIVSHLHALLERHR 528

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI---PFD 879
            +P  + L  +E+  +G+ E++  LL  L+K G+++ LDDFG   S L+YL      P +
Sbjct: 529 IAPGSLVLEITETAQIGDAEQAISLLRMLQKTGVAVALDDFGMGYSNLNYLHQFKSLPVN 588

Query: 880 TVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +K + S +    E    ++R +  +A  I+  +IA+ +        L   G    Q   
Sbjct: 589 KLKMDRSFVAALPEDD-TMVRIVAAIADIIDLDVIAEGVETCEQRDWLLARGITIGQGYL 647

Query: 940 VASPLGFNSI-LKLLKERFP 958
            +  L       + +    P
Sbjct: 648 YSEALPLAQFNAQWVPSPQP 667


>gi|294339053|emb|CAZ87402.1| hypothetical protein; putative EAL, GGDEF and membrane domains
           [Thiomonas sp. 3As]
          Length = 801

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 104/495 (21%), Positives = 215/495 (43%), Gaps = 28/495 (5%)

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRY------IGIANDITEQKKSLEGILCNAFQD 536
            ++  AD Q   +         + G  L          +  D     K+ + +   A +D
Sbjct: 149 IQLPTADGQQRALAWAAVLTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRD 208

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+ NR+ FLD L  ++           T+ ++D+D++K +ND LG  +GD +LV++ 
Sbjct: 209 ELTGLANRRIFLDHLNELM---QRHPAQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVG 265

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +R+  +L+  D+LAR  G+ F ++L   +   +++  A  +   I  P  +    + +  
Sbjct: 266 QRLRGVLREGDLLARFGGDEFVVLLPGYSTEQQLSYIAKRLVNCIEAPFIIQGNSLQIGL 325

Query: 657 SIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713
           S+G           +  +++ A++AMY AK  G      F      + +   +  + +  
Sbjct: 326 SLGLVVQQPDAPVDAETLVRRADMAMYAAKKNGRQQYRIFDQQMEDAMQERHRKLQWVQS 385

Query: 714 AVENSELYLVYHPIIRLMDE----------EIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           A+ ++ L L Y PI+ L             +I G EAL++      G   ++ F  + ++
Sbjct: 386 ALRDNRLELQYQPILSLQAASAAKGAEPQVQIDGAEALLRLRDAA-GLHRAATFEAVLDD 444

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-L 822
             +  A+  F+L    R   +W        + I +NI+ +  LD +    +++++++   
Sbjct: 445 DTLAVAVGRFVLAAAMRQADAW--FGAGRALQISVNISPRHFLDPQFLSDLRSVLTQHPQ 502

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +E     +   +R ++ + R++G+ + LDDFGT  + L +L  +   +VK
Sbjct: 503 CPPGLLALELTEHGSELDGAMARFMVAQCRQLGVQVILDDFGTGSASLIHLQQLEITSVK 562

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S       +   ++I   ++ +A+ +   +I + +        L+ MGC   Q   +
Sbjct: 563 IDRSFTHDLFTSGAGLSISYGLLRIAELMGLEVIGEGVSSAQHALALSSMGCRRFQGYAI 622

Query: 941 ASPLGFNSILKLLKE 955
           + PL  +     L  
Sbjct: 623 SPPLSLSDFEVWLAN 637


>gi|330987502|gb|EGH85605.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 607

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQALLSSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 223 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPTEEPDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLASGVCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLNWL 584


>gi|83643875|ref|YP_432310.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631918|gb|ABC27885.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 1247

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 182/464 (39%), Gaps = 14/464 (3%)

Query: 496  IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + R +      G++         I   +     +   A  D LTG  +R  F  +L   L
Sbjct: 788  MDRGQLARVQEGEVPFVDQSLYSI--VQDLYHKMAIQAVHDPLTGCMHRHEFEKQL-QYL 844

Query: 556  DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF---PDILARL 612
                 +++    ++V DID++  IN   G A+GD +L   +  +   L        L R+
Sbjct: 845  ATWVKNNDETAALIVFDIDQFGAINSNYGNAIGDRLLRDFSLLVDSWLDELRIELKLGRI 904

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
             GN F +++   +  + +       ++         E   + T S+G          +S 
Sbjct: 905  GGNEFALLVSPASQDVALDAAERVCKQFSKHRFEAGEGHFSATLSVGVVMINGGGTDASA 964

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPII 728
             L +A LA   AK  GG+ V+ F                   +  A+++ +L+L    I 
Sbjct: 965  FLNHASLACRSAKRAGGSRVKLFLEEDRDQAFQQEVLHWVSRIDQAIDDCDLWLRAQRIQ 1024

Query: 729  RL-MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             +    +    E L+  +      IS + F+   E       I+ ++++ +   + +   
Sbjct: 1025 SMDKSSDEHFYEILLGLNDQNGKPISPAAFIEAGERYKRSIYIDRWVVDNVLSWMRANPA 1084

Query: 788  QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            +      F  IN++   L D+   E ++    K  +   ++    +E+  + +   +   
Sbjct: 1085 KLENMGGF-TINLSGHSLSDDGFLEFLEGHFRKGGFPAQKVCFEITETAAVASLHYTADF 1143

Query: 848  LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
            +  L++ G    LDDFGT  S  +YL  +P D +K +G  +    E     A++RSI  +
Sbjct: 1144 IRELKRTGCRFALDDFGTGFSSYAYLQSLPVDFLKIDGVFVRDIHENMTNYAMVRSINEL 1203

Query: 906  AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + +    IA+ +     ++ L+ +G D++Q   V  P+    +
Sbjct: 1204 GRFMGMATIAECVESVEVLEALSEIGVDWVQGYIVGKPVPLLDL 1247


>gi|188997503|ref|YP_001931754.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932570|gb|ACD67200.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 638

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/430 (21%), Positives = 187/430 (43%), Gaps = 26/430 (6%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               +F DNLTG+ NR      +             +  + +IDID +KKIND  G A+G
Sbjct: 226 YKQRSFTDNLTGLYNRNYLQHIMD-----------FKYIIALIDIDYFKKINDTYGHAIG 274

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGII--LISENNSLKIADFAIAMR---KSIAM 643
           D VL S+   + +L +  DI  R  G  F ++  +  + +   + +    +R   + + +
Sbjct: 275 DKVLKSVANTMKKLTREEDIFIRYGGEEFLLLAKVDRKQDIQVMLNLFERIRSNIEKLKI 334

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI   +  I  T SIG    T+     +E +K A++A+Y AK +G N +E +        
Sbjct: 335 PITDGDY-IKTTISIGVYLNTNKDKNINEAIKKADVALYKAKSKGRNRIEIYDEEKEAEK 393

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +++   ++  A+E + L   Y PI+ L    I   EAL++        +    F+ + E 
Sbjct: 394 KLITVVEVKDAIEENRLLCYYQPIVDLKVNNISHYEALVRIIDKNGNVVPPFNFLNVIEN 453

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +   +   +++       ++        + + IN+   D+L+  + + + ++  +   
Sbjct: 454 TFIYTKLTKAVID------YNYNILKKHKNLKVSINLKQADVLNRSIVDYLLSISKEKDI 507

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           +   + +   E+  +   E S  ++ +L++ G S+ LDDFG+  S   YL  +  D +K 
Sbjct: 508 TERML-IEIVETEDLLAYEESLEIIKQLKEAGYSICLDDFGSGYSNFVYLLRLNVDYLKI 566

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + +L+      +    ++R I    K ++   IA+ +  E  +  +  +  DY Q    +
Sbjct: 567 DANLIKNIVNDDVSYEVVRMIAQFCKKMKIKTIAEYVENEEILGIIKELDIDYGQGYLFS 626

Query: 942 SPLGFNSILK 951
            P     I+ 
Sbjct: 627 KPKPIEEIID 636


>gi|332993679|gb|AEF03734.1| sensory box/GGDEF domain/EAL domain-containing protein [Alteromonas
           sp. SN2]
          Length = 433

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/427 (21%), Positives = 185/427 (43%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             ++L  +PNR +F+D ++    L     +   ++M++D+ ++  +   LGI VGD  L+
Sbjct: 4   HHNSLATLPNRFAFIDTVSKCGVL-----HPSLSLMLVDVVRFSDVTTSLGINVGDRFLL 58

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  RI  L      L R+SG+ FG+      ++ ++ D    + +    P++       
Sbjct: 59  EIANRIQSLFGGDICLGRISGDVFGLAFPGMRSASQMRDMFERLVEHFKAPMHHDGHAFI 118

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711
              ++G  +  S     +  +   E A+  AK     +   + +         +    DL
Sbjct: 119 ADFNVGVVTSDSQAFEITAFVSRGEAALKQAKENKYENFCLYNMQDKTDTGRSLALKADL 178

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+  +EL L Y P + L   E++G E L++W+HP  G +     +  AE   M+  + 
Sbjct: 179 KRALSQNELELYYQPKVNLQTLEVIGAECLLRWNHPLDGVLFPGPLIEAAESYNMMNELG 238

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            + LE+  R ++ +    +   + + +NI+   L DN L   ++ L        +RI+L 
Sbjct: 239 YWTLEQAFRSLVDF--DFHRLSLTLSVNISPTQLYDNHLIPSLKMLSKTYAMPLTRIELE 296

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E V + N    +  L  LR +G+++++DDFG   S L+Y+  +    +K + + +   
Sbjct: 297 LTEDVALSNSLMVKKQLDELRALGVAISVDDFGKGYSNLAYIRDLDLSALKIDKTFVIEL 356

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI+ +   + K     +IA+ +     +  L  +G    Q    +  +  N  
Sbjct: 357 AKHPVNRAIIEAAKIIGKAKNCDVIAEGVETIAQLHILREVGVTIGQGYLFSKAIPLNDF 416

Query: 950 LKLLKER 956
           + L ++ 
Sbjct: 417 ISLAQQE 423


>gi|317488448|ref|ZP_07947001.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325832064|ref|ZP_08165161.1| PAS domain S-box protein [Eggerthella sp. HGA1]
 gi|316912492|gb|EFV34048.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486385|gb|EGC88837.1| PAS domain S-box protein [Eggerthella sp. HGA1]
          Length = 735

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 181/424 (42%), Gaps = 16/424 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+  +++F D     L  S   D    +++  D+D +K  ND+ G+  GD++L  L
Sbjct: 29  DAATGLLGKEAFFDEAAAYLRHSGARD---VSIVCFDVDHFKLFNDLHGLDCGDELLRYL 85

Query: 596 TRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            R +           LARL+ + F +         ++    + +              I 
Sbjct: 86  GRALALRFSPDGAQPLARLAADTFALCATGIR-PERVERILVDISSECP-------NGID 137

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDL 711
                G           S M   A +A+   K    + V  +      +  +  +    +
Sbjct: 138 AIVRAGVYRIEDPASPVSIMCDRAVIALRTVKGSYFDRVALYDPGMREALVLEREVVAGI 197

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+    + L   P   +   +IVG EAL +W HP+ G ++  EF+ + E   ++++++
Sbjct: 198 ESALREDRIELFLQPKCNIRTGKIVGAEALARWRHPERGIVAPGEFIPLIERNGLVRSLD 257

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L + E+ A  I    D+  + P+ + +N++  D+   ++   + AL+ +    PS I++ 
Sbjct: 258 LRVWEKTAAWIRGLIDE-GVQPVPVSVNVSRADIYLVDVAAELHALVERYGIEPSLIEVE 316

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES     P+R       L + G ++ +DDFG+  S L+ L  I  D +K +   +   
Sbjct: 317 ITESAYSERPDRIVAAFDELAERGFTVLMDDFGSGYSSLNMLKDINVDVLKIDMRFLDRD 376

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +   I+ S+I MA+ ++  +IA+ +     +  L  +GC Y Q  + A P+   +   
Sbjct: 377 DRRSKDIMESVIRMARWLDLPVIAEGVETREQVNFLLDVGCSYAQGYYYARPMEAAAFEA 436

Query: 952 LLKE 955
           LL +
Sbjct: 437 LLTD 440



 Score = 67.7 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  +  V     + + +    +R  + +  SG +V++ DI       +  +    GL + 
Sbjct: 581 YGSVTDVTERMEYMEALRKSEQRFEMTLEASGTVVFELDIPTRTARYSEFLQQAFGL-AE 639

Query: 444 SMHGPIRNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           ++      ++    +     ++FR I          R     R    D    W  + +  
Sbjct: 640 TVANAPEGFIEQGTVAEESIEDFRAIYRDLYAG-APRTSAVVRAIMGDGSRAWNRVTLLA 698

Query: 502 MSNSNGDILRYIGIANDITEQ 522
           M N  G  ++ +G+  ++T +
Sbjct: 699 MPNEAGAPVKAVGLVENVTRE 719


>gi|326388655|ref|ZP_08210248.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206906|gb|EGD57730.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 591

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 112/456 (24%), Positives = 198/456 (43%), Gaps = 18/456 (3%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           RY  +  ++  ++K+    L  A  D LTG  NR+     L T L            ++ 
Sbjct: 112 RYADLHREVLIRRKAETTALRLAETDPLTGCLNRRGLDAALATTLSRHVELGGNLAGLL- 170

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-- 628
           ID+D++K+ NDV G  VGD +L    RRI   L     LAR  G+ F  ++   + +   
Sbjct: 171 IDLDRFKQANDVHGHKVGDAILSETARRIDTGLPQGSALARFGGDEFTALVPLMSGADPS 230

Query: 629 -KIADFAIAMRKSIAMPINLLEREITVTASIGFASW-----TSSKITSSEMLKNAELAMY 682
            +I   +  + K++  PI      + +TASIG A            T++++LK A++AMY
Sbjct: 231 GEIDLISTRISKALVEPIRHDGHTVALTASIGSAVACTPHRDDLSSTANDLLKQADIAMY 290

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G  H   F  +  R       +++++   +E +E    Y   I L    IVGLE 
Sbjct: 291 QAKKEGRGHYCRFTPAMEREMLQRCRLEQEIREGIERNEFVPCYEFQIDLTSGAIVGLEM 350

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
             +W  P  G +++  F+ +AE + ++  +   ++     D+ +W      P + + +N+
Sbjct: 351 HGRWLSPSRGPVTADVFVPLAENIGIMGHVWESLIRNAFADMATWA-----PHLTLAVNV 405

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +  DL D    + +  ++ +   +P R+++      +  +    R L   L   G+ L+L
Sbjct: 406 SPGDLRDPWFAQKLLKMLMEARIAPGRLEVEIVHGCLDQDFALLRSLFISLHNQGVRLSL 465

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDI 918
           DDFGT  S L+ L  +P D +K + + + G         IL +I  +  N+   I  + I
Sbjct: 466 DDFGTLYSSLAQLRALPLDRIKIDPACIVGIDRDEDVETILGAIGSVGHNLSLPITMQGI 525

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
                + +L   G    Q       L    + + L 
Sbjct: 526 DTPEMLTKLRGHGFSRGQGKVFGPLLNGAELRRELA 561


>gi|71734262|ref|YP_276365.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71554815|gb|AAZ34026.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 620

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 181 FIDQPTGLYNRSRLQEDIHQALLSSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 235

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 236 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 292

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 293 PVQMQVGLGVVTLNRDPTEEQDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLS 352

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 353 SLTSAVHSHDQLRLVYQPRIDLASGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 413 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 470

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 471 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 530

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 531 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEA 590

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 591 DAVLNWL 597


>gi|323498478|ref|ZP_08103471.1| putative signal transduction protein [Vibrio sinaloensis DSM 21326]
 gi|323316367|gb|EGA69385.1| putative signal transduction protein [Vibrio sinaloensis DSM 21326]
          Length = 750

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 103/435 (23%), Positives = 207/435 (47%), Gaps = 13/435 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K     +   AF D LTG+ N+      +  + +          ++  I+ID+ K IN+
Sbjct: 316 EKSKYLELSHQAFHDPLTGLANKNKLRKEVQRLANNPQ-------SIAFINIDRMKSINE 368

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G   GD VL++++ R+  L+    ++AR  G+ F I+     +  +       + +SI
Sbjct: 369 LYGQKYGDQVLIAISERLKALIGKNGMVARGFGDEFFIMFP-CASESETEVICHRVLQSI 427

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE-SFRVSSF 700
           A P  + +  I +TASI   +    +    EM  +  +AM  AK         + +    
Sbjct: 428 AKPFLIDDSTILLTASIAATNTAKLQTEFDEMTWSLGVAMTEAKKSKNTVSFVNAQFQEQ 487

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              R+ ++  L  A++N E+++V+ P  R  D  + G+EAL +W   + G I    F+ +
Sbjct: 488 HLKRLNVEFKLKKAIKNREIFVVFQPQFR-ADGSLCGVEALARWIDEELGYIPPDLFVSV 546

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  ++  +   ++++  R+              + IN++ + L+D+++ + ++  ++ 
Sbjct: 547 AEQSGLMSDLGELIMQKAIRETAHLHQST-STRYSLSINVSVQQLMDSQIKQALRKELTL 605

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +ESV + + ++   +   L + G  L+LDDFGT  S LS L  +P   
Sbjct: 606 NDMSPKDVILEITESVFIEDMQQVNAMCNELVEEGFRLSLDDFGTGYSSLSSLSQLPLSE 665

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S + G  +   +  ++ +II +A+N + T++A+ +  +   ++L  MGC   Q  
Sbjct: 666 LKIDKSFIDGLPDDSSSERMVNNIIDIARNHKMTVVAEGLETQAQKQKLIEMGCLCFQGY 725

Query: 939 HVASPLGFNSILKLL 953
           + A P+    +  LL
Sbjct: 726 YFAKPMESADLNALL 740


>gi|332306428|ref|YP_004434279.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173757|gb|AEE23011.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 442

 Score =  333 bits (854), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 194/428 (45%), Gaps = 12/428 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+L  +PNR  FL+++  +L       N   ++++ID+ ++  ++   G  +GD++L++
Sbjct: 5   HDSLRTLPNRHIFLEQIDVMLKR-----NPHHSMLLIDVVRFSDVSSSFGYELGDELLLT 59

Query: 595 LTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +  RI  L       L R+SG+ FG+++  + + +++  F I + +    PI + +    
Sbjct: 60  IANRISYLFAGHHAQLGRISGDIFGLVIPGKFSQVQLQRFYIHLIEHFKTPIGVGDHSFI 119

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDL 711
              ++G  S   S I +S+     E A+  AK    ++            S  + +K DL
Sbjct: 120 ADFNVGAVSNEESAIAASQFFTRVEAALKQAKQNRYDNFCYMSLVDKPDNSRSITLKADL 179

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ + EL + Y P + L   EIVG E L++W+HP  G +     +  AE   M+  + 
Sbjct: 180 KRALSHHELEIYYQPKVNLRTLEIVGAECLLRWNHPLDGVLFPGALIEAAESYNMMNEMG 239

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++LE   + +           + + +N++   L D    + +            +I++ 
Sbjct: 240 YWVLEAAFKGVKELAAA--NVRLKLSVNMSPTQLYDPHFVDQLAEFARVYEVDLGQIEIE 297

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E V + N       L ++R +G+S+ +DDFG   S L+Y+  I  DT+K + + +   
Sbjct: 298 LTEDVALSNSFVVTSQLTQIRALGVSVAIDDFGKGYSNLAYMRNIELDTIKVDKTFVMEL 357

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +E     A++ +   +A      ++A+ I     +  L  +G    Q    +  +  N  
Sbjct: 358 SESPINRAVIEASKLIATAANCELVAEGIENIHQLHVLREIGVMEGQGFLFSRAVPINDF 417

Query: 950 LKLLKERF 957
           ++L ++ F
Sbjct: 418 IRLTQQDF 425


>gi|260888052|ref|ZP_05899315.1| putative hybrid signal transduction histidine kinase and
           diguanylate cyclase/phosphodiesterase [Selenomonas
           sputigena ATCC 35185]
 gi|330839938|ref|YP_004414518.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Selenomonas sputigena ATCC
           35185]
 gi|260862205|gb|EEX76705.1| putative hybrid signal transduction histidine kinase and
           diguanylate cyclase/phosphodiesterase [Selenomonas
           sputigena ATCC 35185]
 gi|329747702|gb|AEC01059.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Selenomonas sputigena ATCC
           35185]
          Length = 567

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 193/444 (43%), Gaps = 22/444 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +++ +  +  +   D LTG+ NR++F ++    ++L   + ++R  ++  DI+ +K IN
Sbjct: 135 ARERQILEMRHHIEIDALTGVYNREAFYEK---TVELLQQNRSVRYNILYFDINCFKIIN 191

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+  I  G+ +L +       + +   + A +  + F I +  +   + I      + + 
Sbjct: 192 DLFHIETGNLILKTAGTYFKTITEGIGVAAHMEADHFAICMPEDMLDIDI------LLEG 245

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I   I  L  +  +    G        +  ++M   A +A+   K         +     
Sbjct: 246 IDSAIFSLGIKNNILFYAGIYPVDDVLVPVNQMCDRAHMALNTVKGLYKKRYAYYDEKMR 305

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  +  M+  ++  A+ + +  + Y PI  +     V  EAL++W HP  G I    F+
Sbjct: 306 ETLLEEQMLLREMEQALSSGQFCVYYQPIYSIKAGRAVSAEALVRWRHPTAGVIPPVRFV 365

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL----INIASKDLLDNELCEGM 814
            + E    +  ++ F  E + R +     +        +    +N       DN+ C+ +
Sbjct: 366 PLFERNGFVVRLDRFAWEEVCRMLAERIREGLPVVPVSVNVSRLN-----FYDNDFCDTV 420

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L+ K    PS ++L  +ES    NP +   +L RL  IG+++ +DDFG+  S L+ L 
Sbjct: 421 VGLLQKYGLDPSLLRLEITESAYTDNPVQLLSVLKRLHDIGLTILMDDFGSGYSSLNMLK 480

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K +   +    +   A  ILR ++ MA +++ +++ + +  +  I  L+ + C
Sbjct: 481 NVTVDILKIDMGFVQNLEDSERAPTILRRVVEMAHDLKMSVVVEGVETKAQIDFLSSIDC 540

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D IQ  + A P+       L+++ 
Sbjct: 541 DKIQGYYFAKPMAREDFTALIEKE 564


>gi|285018218|ref|YP_003375929.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473436|emb|CBA15941.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 574

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/411 (27%), Positives = 178/411 (43%), Gaps = 6/411 (1%)

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           LT ++  +         ++ IDID +  IN+ +   VGD  L  LT R+   L+   +L 
Sbjct: 25  LTGMIAEA-LAGGPGVMLLHIDIDHFASINENMNPEVGDQALALLTHRLQAHLRGRGLLW 83

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           R   +   + +    +      FA  +R+ I +P+++L   + +T  IG +         
Sbjct: 84  RHGSDELVMAVPRTADVPAAETFAEEIRQQIELPLSVLPYTLFMTGKIGVSLCPEHSTRL 143

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728
           S +L  AE A+Y A   GGN V  +      S      I   +  A+ N EL L Y P++
Sbjct: 144 STLLDYAEDAVYQAAREGGNLVRLYAADGQPSAHSESIISRQIIDAIPNGELRLRYQPMV 203

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
              D  +VG+E+L++W  P  G +    FM  AE L +I  I  +++E   R    WRDQ
Sbjct: 204 SARDGRVVGMESLLRWQSPTLGILVPERFMRTAERLGVIVQIGTWVMEGALRQARLWRDQ 263

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  I +N+++  LL       + + +      P  + L  +ES +  N       L
Sbjct: 264 GFD-DFTIAVNVSTLQLLRPTFFNEVMSALQAAGVPPQMVVLEINESALTNNVNFVYETL 322

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMA 906
             L   GISL+LD+FGT  S LS L   P D +K + S +  +        I R+II M 
Sbjct: 323 ANLCHEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMG 382

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             +   +IA  +  +  +  L R  CD  Q      P+   +    L+ R+
Sbjct: 383 HQLGMVVIANGVESQAQLGFLRRNDCDIFQGYLFGEPMSAEAAGMALRRRY 433


>gi|295097121|emb|CBK86211.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 657

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 202/491 (41%), Gaps = 19/491 (3%)

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           ++  + +   R+  E    +        +   R   +     +  +  + +I +Q+   +
Sbjct: 167 INRLIVHPLRRIARELNDLSPQEHMGHQLPLPRLHHDDE---IGMLVRSYNINQQRVLRQ 223

Query: 528 GIL--CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                 NA +  ++ +PN+   +  L   +    T       +MVI  +  +    VL  
Sbjct: 224 QDELSSNATRFPVSDLPNKAFLMALLEQTVARQQTT-----ALMVIACETLQDTAGVLKE 278

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           +  + +L++L  ++  +L    +L ++SG    +I                +   I   +
Sbjct: 279 SQREMLLLTLVEKVKSVLAPRMVLTQVSGYDLVVIAHGVKEPWHAITLGQQVLTVINERL 338

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +   ++  +ASIG   +    +T+ ++ + A  A + A+ +G N ++ F        + 
Sbjct: 339 PIQGIQLRPSASIGIEMYY-GGLTAEQLYRRAFSAAFTARRKGKNQIQFFDPEQMEKAQQ 397

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+  A++N +  L   P + L   E+   EAL++   P          +   E 
Sbjct: 398 RLTEESDILTAMDNRQFALWLQPQVNLRTGEVTSAEALLRMQQPDGTWELPEGMIERIES 457

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             ++  +  ++LE   R + +W+ +     + + +N+++  L+   +   M  LI +   
Sbjct: 458 CGLMVTVGYWVLEESCRQLAAWQQRGIT--LPLSVNLSALQLMHPTMVPEMLELIHRYRI 515

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPFDT 880
            P  + L  +ES  + NP+ +  +L  LR  GI + LDDFG   S L  L +   +P D 
Sbjct: 516 QPHTLILEVTESRCIDNPDDAVAILKPLRNAGIRIALDDFGMGYSGLRQLQHMKTLPVDV 575

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K + + + G   +  +++++II MA ++   +IA+ I  +   + L   G +  Q    
Sbjct: 576 LKIDKTFVDGL-PEDCSLVQAIIQMAHSLNLHVIAEGIETDAQREWLAAAGVESGQGFLF 634

Query: 941 ASPLGFNSILK 951
              +  +   +
Sbjct: 635 DRAVPTDIFEQ 645


>gi|330888713|gb|EGH21374.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 607

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQALLSSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 223 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G         + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPTEEQDWMRMVISAADDARDRNLGWATYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLASGVCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLNWL 584


>gi|320322576|gb|EFW78669.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330171|gb|EFW86157.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 607

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQALLSSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  E            + +    P+     
Sbjct: 223 LVTEIKSRLEHLLPPTCSLYKVSPTRFGFLLPGERAPDH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPTEEQDWMRMVISAADDARDRNLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLASGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLNWL 584


>gi|333026832|ref|ZP_08454896.1| putative sensory box protein [Streptomyces sp. Tu6071]
 gi|332746684|gb|EGJ77125.1| putative sensory box protein [Streptomyces sp. Tu6071]
          Length = 640

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/480 (23%), Positives = 206/480 (42%), Gaps = 17/480 (3%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D      T  P +   L L + S+ G     L  + +    +    L      RR  L  
Sbjct: 5   DEAGTITTANPALHDYLALPAASLPGRPLTHLTVLGLT--PHTTPGLPEVFTGRRHHLVC 62

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R+ +      W  +R     +    +   +    D +        +     +D LT +
Sbjct: 63  TRRIASPRGGETWAELR----LDYLASVRGALLTVRDTSLGHDLRARLRTAEREDPLTRL 118

Query: 542 PNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR--- 597
             R  FLDRL   L+         R  + V+ +D ++ +N   G  VGD +L ++     
Sbjct: 119 AGRAHFLDRLADTLEEHGLRGGRGRVGLCVLGLDGFRHVNTAHGHLVGDHLLRAVAARLA 178

Query: 598 ----RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
                +        +LARL G+ F +++       ++ + A  + + +  P ++  R + 
Sbjct: 179 RLAPLLASAHGEAPVLARLGGDEFALLVGETTGPGQLTELAATVLRELREPYDIAGRRLA 238

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           V+AS G A   + + + +E+L+    A+  AK  G      F  +          +   L
Sbjct: 239 VSASAGVAELRARETSPAELLRAVTTALGWAKAEGRGRWALFDSARCEDGAHQDLLATAL 298

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AV + E  L Y P++ L D  + G+EAL++W HP++G ++ + F+ +AE    I  + 
Sbjct: 299 RPAVRDGEFELEYQPLVALADGTLHGVEALVRWRHPRFGRLAPNRFIDVAERDGSIVELG 358

Query: 772 LFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            ++L        SW+  +    P ++ +N+  + L D+++   +  ++++T   PS ++L
Sbjct: 359 RWVLRTACAQARSWQLARPGARPPYVSVNVTVRQLWDSDVVADVADVLAETRLPPSLLQL 418

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES V+G   R    L  L  +G+ + +DDFGT  S LSYL  +P   +K +GS + G
Sbjct: 419 ELTESEVVGQTGRPLRALQELSDMGVRIAIDDFGTGYSNLSYLSRLPVSVLKLDGSFVRG 478



 Score = 95.4 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                I+ +++ +A  +  T+ A+ +      + L  MGCD  Q    + P+    I  L
Sbjct: 565 PADEVIVEALVGLAHRLGLTVTAECVETRGQAERLRAMGCDMGQGYLYSRPVPPERIGLL 624

Query: 953 LK 954
           L+
Sbjct: 625 LE 626


>gi|254514100|ref|ZP_05126161.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
            proteobacterium NOR5-3]
 gi|219676343|gb|EED32708.1| PAS sensor diguanylate cyclase and phophodiesterase [gamma
            proteobacterium NOR5-3]
          Length = 1322

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 97/434 (22%), Positives = 184/434 (42%), Gaps = 15/434 (3%)

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             +D++T + N +S L +L   L  +    +     +++DID +  +NDV     GD VL 
Sbjct: 889  NRDSVTQLINGESLLYQLQRTLRHAQAKGSEH-AFLLLDIDNFALVNDVFDDTSGDQVLN 947

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR-KSIAMPINLLEREI 652
               R + ++     + AR+ G+ FGI+L    +S +    A  +R    +  +N+    +
Sbjct: 948  EFGRLLAQINDRRALTARMEGDEFGILLTY-RDSDEARRIADKIRTDIASSSLNISGELV 1006

Query: 653  TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--- 709
            + T SIG AS   +  + + + + A  A+  AK +G + V  F           ++    
Sbjct: 1007 SFTVSIGVASVLQTSASPASITQQARQALTLAKTQGKDQVVVFDTDQEEVMNYKLERASS 1066

Query: 710  --DLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               L  A+    L L   PI+       +      E L+          S  +F++ AE 
Sbjct: 1067 RKQLDDAMSTDSLVLRAQPIVQSAVDGREGAKHHYEILLSLRDDNGELQSPQDFIMSAER 1126

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
               +  ++ ++L+     I    D     P  + IN++   + +N+  + +   IS+   
Sbjct: 1127 FGYVTLVDRWVLKETFSWISLLMDSQKEVP-ELSINLSGTSITNNDFLDYVLEQISEYGV 1185

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              S++    +E+  + N  R+   +  L+ IG   +LDDFGT  +   YL  +P D VK 
Sbjct: 1186 GTSKLCFEITETGAIDNLPRAADFVRTLKNIGCKFSLDDFGTGLASHKYLKELPVDYVKI 1245

Query: 884  NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +G+ +T         A+ +SI  +A  +    +A+ +     +  L  +G DY+Q   + 
Sbjct: 1246 DGTFITDIHNNATDYAMTKSINDLAHFLGQKTVAECVENLEIVPALREIGIDYLQGWGIG 1305

Query: 942  SPLGFNSILKLLKE 955
             P   + + K L  
Sbjct: 1306 MPRELHEVTKELAN 1319


>gi|166032061|ref|ZP_02234890.1| hypothetical protein DORFOR_01763 [Dorea formicigenerans ATCC
           27755]
 gi|166027784|gb|EDR46541.1| hypothetical protein DORFOR_01763 [Dorea formicigenerans ATCC
           27755]
          Length = 591

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 94/425 (22%), Positives = 181/425 (42%), Gaps = 18/425 (4%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            L+G+  R+ FL+ + T LD           ++ IDI+ +K  ND  G   GD +L+ + 
Sbjct: 13  PLSGLYIRKRFLNEVRTFLDQKHPQG---WCIVAIDIENFKLFNDWYGQDSGDYLLLEIA 69

Query: 597 RRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             +  L +  + +    S + F I +  + +          +  +I   I+ LE++ +  
Sbjct: 70  AYLRNLHQEDNYITGHFSADDFFICMPDDGHK------LRHIYATIYHYIDKLEQDDSFL 123

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
            SIG        +  S M  NA++A      K           ++     +  I  D   
Sbjct: 124 PSIGVYRIEDESLNVSTMCNNAQIAASSVDGKIGNRICYFESGMAKKIELKQRILRDARH 183

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            +EN E      P   +   E+V +EAL +W       +S  EF+ + E    I   +++
Sbjct: 184 GLENHEFIFYLQPKCNMATGELVSMEALARWQKSDGTFVSPEEFIPLFESSGFITRFDMY 243

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + + + + + +W+D+     + I IN++  D+ + ++ + +  L  +   SP  + +  +
Sbjct: 244 IWKSVCKTLAAWQDKGCKL-VPISINVSMIDITNIDVPQYLSMLTEQYHISPEYLPVEIT 302

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ESV   +    +  + R  K G  + +DDFG+  S L+ L     D +K +   M     
Sbjct: 303 ESVFAESNTIVKNTITRFHKKGFYVLMDDFGSGYSSLNVLKDANVDYLKLDMKFMQ-IDA 361

Query: 894 KRI----AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           K       IL+SI+ MA  +   IIA+ +  +   + L  M C+Y Q  +   P+   + 
Sbjct: 362 KNKGKGIQILKSIVDMAYRLGLVIIAEGVETKEQSEILKSMNCNYGQGFYFHRPMSVEAA 421

Query: 950 LKLLK 954
            +L++
Sbjct: 422 EELIQ 426


>gi|295103801|emb|CBL01345.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 888

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 177/416 (42%), Gaps = 18/416 (4%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +FL  L T L            V  +DI  +K  N++ G   GD +L ++   +    + 
Sbjct: 27  AFLQALHTFLT---AHQGTEWAVAAVDIQHFKLYNELYGTEKGDALLETVANCLLGYSRQ 83

Query: 606 PDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               +     + F + L  E            +  ++   +    +++T    +G     
Sbjct: 84  TGYPVGYFGNDDFFLCLPDEKAEQTA------VLATLQACMAAGRQDVTFFMVMGVCPVQ 137

Query: 665 SS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
           ++    ++ +   A++A       G  H     + +   ++  +  +L  A++N E    
Sbjct: 138 ANPGADAATLCNYAQIAGVTT-DSGYLHRFEPTMLNELKEQQQLLGELERALDNHEFCFF 196

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
             P    +   IVG+EAL++W+HP  G +  +EFM + E   ++  ++ ++ E + + + 
Sbjct: 197 LQPKCNSITRAIVGMEALVRWNHPTRGCVPPAEFMPLLERTGLVTRLDQYIWESVCQTLQ 256

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W++  +   + + +N++ +D+L+ ++ +    L+ K    P  +    +E++V  + + 
Sbjct: 257 KWQESGSNL-VPVSVNVSVQDILNLDVPQIFADLVEKYKLEPKLLLAEITETMVAEDTQM 315

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----IL 899
               +  L + G ++ +DDFG+  S L+ L     D +K +  L+    ++  +    I+
Sbjct: 316 VENAIQGLHRKGFAVMMDDFGSGYSSLNMLKDTNVDAIKLDMKLI-DMNQENRSKGVQIV 374

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            S++ MA  +   IIA+ +     +  L    C Y Q  +   P+   +  KLL +
Sbjct: 375 ESVVDMAHRLNLPIIAEGVETPEQVSMLQAADCLYSQGYYFFKPMPVENAEKLLAD 430



 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 108/341 (31%), Gaps = 36/341 (10%)

Query: 405 ERQSLAVLGSG---DIVWDW---DIVRDRVTTTPDIATILG--LASGSMHGPIRNWL--- 453
           E+ +LA+       D V +    ++           A +LG  L          + L   
Sbjct: 456 EKTALALQAYQIFTDNVLEISLLNLATGAYRVIKRDARLLGADLEKEEDFVNYCDRLVNE 515

Query: 454 PYIHINDRDNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +H  D D F        L S + +      Y +R      Q+ W+   + P       
Sbjct: 516 KIVHEEDADLFLEQTDLEALRSVLYHATAPEFYRYR-ENVSGQYIWVTTEVLPCRGCCAQ 574

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
                 +  +  +  +  E +  +   D LTG+ NR  +   L  +      +      V
Sbjct: 575 NPWATVLVRNDAQADQLSEELDFSYSHDTLTGLANRSRYEADLREL-----PNSGYESVV 629

Query: 569 M-VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
              ID+    ++N+ LG   GD +L  L     +       + R+  + F I+  +E   
Sbjct: 630 CTYIDVVGMHEVNEHLGHRSGDTLLCCLANAARKFFA-TSRVYRIGSDEFVILTPNEP-P 687

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +   A  MR  +       E++  ++  I     T+      E +  AE AM   +  
Sbjct: 688 YSVWSTADRMRAFLK------EKDYVISVGIQQ---TADLRHLDEAVAKAEAAMRQDRQA 738

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              +  + R          ++  L    +      V  P  
Sbjct: 739 --YYDHNGRARQLEGLNEKMERTLQEKRDAEHFLKVLAPKY 777


>gi|149911550|ref|ZP_01900164.1| hypothetical protein PE36_11732 [Moritella sp. PE36]
 gi|149805395|gb|EDM65405.1| hypothetical protein PE36_11732 [Moritella sp. PE36]
          Length = 545

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 96/434 (22%), Positives = 195/434 (44%), Gaps = 15/434 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D ++G+PN  +   R +   +        +  ++V+ +D +  IN   G   GD+ L  L
Sbjct: 111 DPISGLPNGWAMSARASHFFNTVN-STTPKMRLLVLSVDNFSTINFRYGFDAGDNYLSVL 169

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA--MRKSIAMP-----INLL 648
            +++  +L    ++ RLS  RFGI++ ++     +   A    + + +        I   
Sbjct: 170 GKKLQSILSESGLVVRLSNARFGILIENKCRLSSVELNAYIVNICEQLCNLSQGSLILNN 229

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVM 706
             ++  + SIG ++  +   +   M   AE AM  ++             +        +
Sbjct: 230 GIKVNKSFSIGISAEHTEYDSYFSMEIAAETAMRESERHSNSQYCFAKVEMKPDLMTNKL 289

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I ++   A+E S + + Y P     + ++VG EAL +W H   G IS   F+ IAE++ +
Sbjct: 290 IIDEFPNAIEKSLINIHYQPQYEFENNKLVGFEALSRWMHKDLGYISPDVFIRIAEDIGL 349

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
               +L++  ++   I+ WR++    P  I INI+ K L   +    +Q++I  +    +
Sbjct: 350 HFEFDLWVFTQVCHQIVQWREEYVYSP-RIAINISFKTLEMTDFVTRLQSIIEHSGCPTN 408

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP--FDTVKFN 884
            +++  +E+  + N       +  ++K+GI++ +DDFGT  S LS +  +    DT+K +
Sbjct: 409 LLEIEVTETASISNMITLIDNVRAVKKLGINIAIDDFGTGYSSLSLVRTLRSSLDTLKID 468

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+     +       R +I + + +E  ++A+ +        L  +GCDY Q  +   
Sbjct: 469 RSLVADICSSPLDREFARKVIGLGEVLEVKVLAEGVETLAQRDLLQELGCDYAQGYYFDK 528

Query: 943 PLGFNSILKLLKER 956
            L   +  KL+ ++
Sbjct: 529 ALTVKAAEKLIIKQ 542


>gi|328541629|ref|YP_004301738.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [polymorphum gilvum SL003B-26A1]
 gi|326411381|gb|ADZ68444.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)
           [Polymorphum gilvum SL003B-26A1]
          Length = 709

 Score =  332 bits (852), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 199/498 (39%), Gaps = 20/498 (4%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L   +  R  RL     V   D+      I + P    +  I   + +        
Sbjct: 220 LEAPLRKALAGRPARLYA--LVPDGDDGAGDAEIHVGPFVGEDDAIEGALLVLRSDELAC 277

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A +D LTG+ NR++F   L   L  + T  +    ++ ID+D +K +ND  
Sbjct: 278 QRTRELERLAMEDPLTGLANRRAFQKSLEEELTKARTGISEGFALLAIDLDDFKALNDRG 337

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD +L  +  ++G L      +ARL G+ F  +L    +  +    A ++ +++  
Sbjct: 338 GHAAGDAMLCRIAAQLGALAAERGCVARLGGDEFA-VLRYGADQDEANRLARSIVEALEA 396

Query: 644 -PINLLEREITVTASIGFASWTSS-----KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             +        V  SIG A            T+ ++L  A+ A    K  GG  V  F+V
Sbjct: 397 IRLEWDGALFRVGCSIGVAVLDRQFVRTMNATAKDVLHWADQACLTGKATGGGQVRQFQV 456

Query: 698 SS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                  R D +     +  A+ +  L L   P++ L     V  E L++        + 
Sbjct: 457 GDPLLAARRDDLANVATVEQALADDRLTLFAMPVVDLATGTPVMDEILLRVRGEGERILR 516

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               +  AE   +++ I+ ++++ +   +             + +N++++ + D    E 
Sbjct: 517 PGGMIASAERHGLMRRIDHWVIDGVLDRLTGEPGLGP-----VSVNLSAQTIGDPLFLET 571

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +QA ++      +R+    +E+ V  +   +  L+  L+  G  + +DDFG   S  ++L
Sbjct: 572 LQARLALNPRLAARLCFELAETAVARDTVAAATLVATLKDHGCRVAMDDFGGGWSTSAHL 631

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +GS++        + A+++ I+ +A+ +   +IA+ +        L  +G
Sbjct: 632 RQLQLDWLKIDGSIVRTIASDPVQHAVVKGIVCVARELGIDLIAEHVEDPDTADMLQDLG 691

Query: 932 CDYIQDSHVASPLGFNSI 949
               Q      P  + ++
Sbjct: 692 VAMGQGFLFGEPAPWRAL 709


>gi|119776732|ref|YP_929472.1| putative diguanylate phosphodiesterase [Shewanella amazonensis
           SB2B]
 gi|119769232|gb|ABM01803.1| diguanylate cyclase/phosphodiesterase [Shewanella amazonensis SB2B]
          Length = 502

 Score =  332 bits (852), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 192/423 (45%), Gaps = 9/423 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ +   F+  L   +    T++  R  +  +DID +K+IND  G    D  L  L
Sbjct: 77  DSLTGLCSLSVFIRSLNNTIRKLKTNE--RLILGYLDIDDFKQINDNFGYERADAFLRDL 134

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I +      +++RL  ++F   +  + +    A      R          +  I  T
Sbjct: 135 ANDITDAALPGSVVSRLHADQFASFVRLDTSVDMEAHVRGFQRLFAHRA---RQHGIDAT 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVMIKEDLCLA 714
             IG A + +    + +M+ +A  A+  AK +        +  S     R  +  DL  A
Sbjct: 192 CCIGVALFPADGTNAKDMMVSATEALNMAKKKKNAIQYHDKALSEKALQRRQLVMDLRQA 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           + +  L LVY P   L      G+E L++W HP  G I+   F+ +AEE+ +  AI+  +
Sbjct: 252 ISDEVLSLVYQPKYDLSTLTACGVEVLVRWHHPVKGYIAPDVFIPLAEEIGLTAAISKLV 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +++ A ++ S           + +N+++ +  + +    +   I         +++  +E
Sbjct: 312 VDKAAAELGSAGLLDGSLA-HVAVNVSADEFNNADEMYALTQFIKSKKALAPFVRIEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           +  + +  +S  ++  L+  GI+ ++DDFGT  + L+ L  +  D +K + S ++G    
Sbjct: 371 TATLTDMHKSVEIISNLQASGITFSIDDFGTGYTSLAMLKDLTVDEIKIDRSFVSGVEQD 430

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           E+   I+ +I+ MA++ +  I+A+ +     +K L  MGC   Q  ++  P+  + ++K 
Sbjct: 431 ERSRTIVSAIVAMAQSFDIHIVAEGVENAAQLKILQDMGCQQAQGYYLGRPMALHDLVKH 490

Query: 953 LKE 955
           L +
Sbjct: 491 LNQ 493


>gi|324111858|gb|EGC05838.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 660

 Score =  332 bits (852), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 188/435 (43%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 MQRHYEEQSENALRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    +LA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMVLAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +++ ++  +A  A + A  +G N ++ F      
Sbjct: 346 NERLPIESIQLRPSGSIGVAMFHGD-LSAEQLYGHAVSAAFTAMRKGKNQIQFFEPEQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN    L   P + +   +++  E L++   P          + 
Sbjct: 405 AAQQRLTEESDILNALENHRFALWLQPQVDMTSGKVLSAEVLLRMQQPDGSWELPDGLIE 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++    P  + +N+++  L+   +   +  L+S
Sbjct: 465 RIESCGLMVTVGQWVLEESCRLLSAWQERGINMP--LSVNLSALQLMHPNMVPELLGLLS 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRVQPGMLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++R+II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PVDVLKIDKMFVEGL-PDDDSMIRAIIMLAQSLGLEMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK 951
               A  +  +   +
Sbjct: 642 GFLFARAVPIDLFAE 656


>gi|289666038|ref|ZP_06487619.1| Putative signal protein with GGDEF, EAL and two component receiver
           domains [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 533

 Score =  332 bits (852), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 177/394 (44%), Gaps = 5/394 (1%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +DID +  IN+ +   VGD  L    RR+ E L     L R   +   ++ +   ++
Sbjct: 1   IFHVDIDHFASINENMSGEVGDQALTLAARRLQEFLGNRGKLWRHGSDEMIVVAVRREDT 60

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
               DFA  +R+ + +P+++L   + +T  +G +       + S +L  AE A Y A   
Sbjct: 61  PLPEDFAEEIRQQLELPLSVLPYTLFMTGKVGISLCPEHSTSLSTLLDYAEEASYQAARE 120

Query: 688 GGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN V  +  +S  +      I   +  A+ + EL L Y P++   D  IVG+EAL++W 
Sbjct: 121 GGNTVRLYTRNSATNAHSESIIARQIVDAIPHGELRLRYQPLVSARDGRIVGMEALLRWQ 180

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P  G +    FM  AE L +I  I  ++L+   R    WRDQ       I +N+++  L
Sbjct: 181 SPTLGMLVPERFMRTAERLGVIVQIGEWVLQNAVRQARLWRDQGFD-DFSIAVNVSTLQL 239

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           L       + A++         + L  +ES +  N       +  LR  GISL+LD+FGT
Sbjct: 240 LRPGFFNEVMAMLQTAGVPAQFVTLEINESALTNNVNFVHETMANLRNEGISLSLDNFGT 299

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS L   P D +K + S +  +        I R+II M   +  T+IA  +  +  
Sbjct: 300 GDSSLSALVRYPVDRLKIDRSFIKSAPAGSREAAIARAIIAMGHQLGMTVIANGVESQAQ 359

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +  L R  CD  Q      P+   S    L+ R+
Sbjct: 360 LGFLRRNDCDIFQGYLFGEPMSAESAGMALRRRY 393


>gi|255654292|ref|ZP_05399701.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296452582|ref|ZP_06894276.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296881006|ref|ZP_06904952.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296258543|gb|EFH05444.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296428027|gb|EFH13928.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 742

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 179/436 (41%), Gaps = 11/436 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++K +  I   A+ D++T   N   F   +  ++  S    +    ++ I+I  +K IND
Sbjct: 303 RRKYVNQIENIAYLDSITNGINSTKFSILVKPLILES---PDSTYMMVAINIKDFKLIND 359

Query: 582 VLGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   G+  L  L   +   + +  + + R   + F +++ +      +      +   
Sbjct: 360 CFGSKKGNLTLKHLYNVLYKNIDENEEFVCRHDADLFYLLIKNRPVLEALELL-YKIEAD 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVS 698
           I       E    +  S G  +  +       +  +A  A         +    +     
Sbjct: 419 INYFNKNRENPYFLRISAGIYTIENHNEDLITIQDHANTARKSFNKAHQSDFSFYSDIER 478

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   I   +  A+EN E ++   P I +   +I G E+L++W + + G I  S+F+
Sbjct: 479 KRLISEKEISNLMEKALENKEFFMCLQPKIDIKSGKISGAESLVRWKNSEKGIIYPSDFI 538

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+   I  ++L++LE   + I  W  +     + I +N++ + L D    E  + + 
Sbjct: 539 PLFEKSGFICKLDLYILEETCKLISKWIKEGKEV-LRISVNVSRQHLNDKLFLEKYKLIC 597

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       I L  +ES+ + NPE +  ++  +   G   ++DDFG   S L  L     
Sbjct: 598 NKYNVPTYLIDLELTESIFLENPE-AVDIIDDIHSNGFKCSIDDFGFGYSSLGILKDFKV 656

Query: 879 DTVKFNGSL-MTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S  ++ +   R   +++SII ++K +   + A+ I     ++ L  +GCDYIQ
Sbjct: 657 DIIKLDRSFFVSKNNIDRGKVVIKSIIELSKRLGMKVTAEGIEELEQVEFLKNVGCDYIQ 716

Query: 937 DSHVASPLGFNSILKL 952
               + PL  +     
Sbjct: 717 GYVFSKPLLISDFEDF 732


>gi|126700376|ref|YP_001089273.1| putative signaling protein [Clostridium difficile 630]
 gi|255101930|ref|ZP_05330907.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255307799|ref|ZP_05351970.1| putative signaling protein [Clostridium difficile ATCC 43255]
 gi|115251813|emb|CAJ69648.1| putative signaling protein [Clostridium difficile]
          Length = 515

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 97/415 (23%), Positives = 197/415 (47%), Gaps = 10/415 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           FL  +   +    +++     +   D+ + K IND+ G  +GD+VL ++   +       
Sbjct: 85  FLKHVQNYI---ISNEKENCVMACFDLCRLKLINDIYGYELGDEVLNNILSNLKNYFGKE 141

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL--EREITVTASIGFASWT 664
            I  +L  + F +I+  EN   KI      ++  I +   +   + +I + ASIG   + 
Sbjct: 142 AIYGKLKSDVFVLIIKLENREQKIPYLVNLIKNKIVILSQIDSFKMDINIEASIGIYKFN 201

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
           +++I   + + NA++A   +K         F   +       + I+ DL LA++N E  +
Sbjct: 202 NNEIDIKKAIDNADMARLKSKGLKHIEYVEFDNAMEEEIQSIMKIERDLFLAIKNKEFVI 261

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +      I+G EALI+W HP  G +  ++F+ IAE+  +I  I  ++++ +   I
Sbjct: 262 HYQPKVDSSTGNIIGSEALIRWLHPSLGMVGPNKFIPIAEKNGLINNIGRWLIQEVFITI 321

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W  +     + + IN++  +L  N+L +  + + +        I+L  +E+  + + +
Sbjct: 322 NKWISEGINV-LPVSINLSRVELYKNDLVDFFKLMFNTYNIPKELIELEITETTALRDVK 380

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L  ++ +G++++LDDFG   S    L  IP D +K + SL+       K   +++
Sbjct: 381 FISERLYEIKSLGMNISLDDFGVGNSNFINLKGIPLDIIKIDRSLILDIVTNTKTKFMVK 440

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ ++ ++  T+I + +     +K L+ +GC++IQ      PL   +  KLL +
Sbjct: 441 AIVNLSHDLNVTVICEGVEDMHQVKVLSELGCNFIQGYVFFKPLDEMNYKKLLTD 495


>gi|255656744|ref|ZP_05402153.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 515

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 197/415 (47%), Gaps = 10/415 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           FL  +   +    +++     +   D+ + K IND+ G  +GD+VL ++   +       
Sbjct: 85  FLKHVQNYI---ISNEKENCVMACFDLCRLKLINDIYGYELGDEVLNNILSNLKYYFGKE 141

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE--REITVTASIGFASWT 664
            I  +L  + F +I+  E+   KI      ++  I +   +     +I + ASIG   + 
Sbjct: 142 AIYVKLKSDVFVLIIKLEDREQKIPYLVNLIKNKIVILNQIDNFKMDINIEASIGIYKFN 201

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
           +++I   + + NA++A   +K         F   +       + I+ DL LA++N E  +
Sbjct: 202 NNEIDIKKAIDNADMARIKSKRLKHIEYVEFDNAMEEEIQSIMKIERDLFLAIKNKEFVI 261

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +      I+G EALI+W HP  G I+ ++F+ IAE+  +I  I  ++++ +   I
Sbjct: 262 HYQPKVDSSTGNIIGSEALIRWLHPSLGMIAPNKFIPIAEKNGLINNIGRWLIQEVFGTI 321

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W  +     + + IN++  +L  N+L +  + + +        I+L  +E+  + + +
Sbjct: 322 NKWILEGINV-LPVSINLSRVELYKNDLVDFFKLMFNTYNIPKELIELEITETTALRDVK 380

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L  ++ +G++++LDDFG   S    L  IP D +K + SL+       K   +++
Sbjct: 381 FISERLYEIKSLGMNISLDDFGVGNSNFINLKGIPLDVIKIDRSLILDIVTNTKTKFMVK 440

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ ++ ++  T+I + +     +K L+ +GC++IQ      PL   +  +LL +
Sbjct: 441 AIVNLSHDLNVTVICEGVEDMNQVKVLSELGCNFIQGYVFFKPLDEINYKRLLTD 495


>gi|167756052|ref|ZP_02428179.1| hypothetical protein CLORAM_01572 [Clostridium ramosum DSM 1402]
 gi|167704044|gb|EDS18623.1| hypothetical protein CLORAM_01572 [Clostridium ramosum DSM 1402]
          Length = 743

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 99/481 (20%), Positives = 201/481 (41%), Gaps = 25/481 (5%)

Query: 494 WMIIRIRPMSNSNGDILRYI------------GIANDITEQ----KKSLEGILCNAFQDN 537
           W ++ + P S  + +I   +            GI   IT      + + + +   A  D 
Sbjct: 265 WYLLSVIPASVVDNNINGMLFLGYMMLGCCLLGILYLITRIVLMYRNNQKRLEEVALVDE 324

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +TG  +   F  RL             + T++  +I K++ IND+ G   G+ +LV + +
Sbjct: 325 VTGCGSYTRF--RL--AGGDILKSTKSKYTMVYFNILKFQYINDLYGYDEGNLILVKIAK 380

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            +  LL+  +  AR+  + F  +L  ++ +         ++       +  E    +   
Sbjct: 381 ILNNLLQEKEFCARIQADHFVALLQYDSVTQLKKRAEYMIKNMENAINSNDEAAYRIKMI 440

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAV 715
           +G     +       M+  A   +         +   +  +  +       +++    A+
Sbjct: 441 VGIYLIENYNDRIESMVDRAATVIRDENRHELENCNFYNDNIRQRMYKNKELEDLFEEAL 500

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N E  + + P      + + G EAL++W   K G+IS  EF+ + E    I  ++ ++ 
Sbjct: 501 HNHEFEVYFQPKYSTKKKRLYGAEALVRWKSSKLGSISPGEFIPVLERSSNIIELDEYVF 560

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               + I  W D        I +N++   L   +  E    +I       + I+L  +E+
Sbjct: 561 VITCKQIRKWLDDGLEVA-PIAVNVSQLHLYRQDFVESYLKVIDAYQIPYNLIELEMTET 619

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            +  N +  + +L + RK+ I++++DDFG+  S +  L  +P D +K + +++       
Sbjct: 620 SLFDNRDILKDILNKFRKLKITVSMDDFGSGYSSIMMLESMPIDCLKIDKTMIDDLEVNS 679

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K   IL+SII +A+++   ++A+ +      +EL RM  DYIQ  + A PL  +   K+L
Sbjct: 680 KAKEILKSIISLAQSLGLVVVAEGVEQAGQYEELIRMKVDYIQGYYCARPLPLDEYEKIL 739

Query: 954 K 954
           K
Sbjct: 740 K 740


>gi|320193958|gb|EFW68591.1| Protein yhjK [Escherichia coli WV_060327]
          Length = 662

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W++   M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQESGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|110345368|gb|ABG71605.1| hypothetical protein YhjK [Escherichia coli 536]
 gi|312948088|gb|ADR28915.1| putative phosphodiesterase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 662

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|262171070|ref|ZP_06038748.1| GGDEF family protein [Vibrio mimicus MB-451]
 gi|261892146|gb|EEY38132.1| GGDEF family protein [Vibrio mimicus MB-451]
          Length = 481

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 197/450 (43%), Gaps = 26/450 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ +     A+ D LT + NR      +   L  +         ++++D++++K++ND +
Sbjct: 29  RAADYQQFLAWHDPLTQLKNRNF----IVKTLKKNHLGKEEAIALVLLDLNRFKELNDTI 84

Query: 584 GIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+ +   +      F    AR+  + F ++L   N       F   +   + 
Sbjct: 85  GYAFGDQLLIKIASLLVIRCQPFGYECARIGADEFAVLLHPCNG--NAEFFIRNLWNDLT 142

Query: 643 MPINLLEREITVTASIGFASW--TSSKIT-----SSEMLKNAELAMYHAKH--RGGNHVE 693
             +   +    ++ ++G  ++    +        +S +L NA+LA++ AK    G     
Sbjct: 143 KLVKDNDPTKRLSIAMGVVTYQNPDTGQANSALRASSLLNNADLALHIAKKTSDGQVVYY 202

Query: 694 SFRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +  +    + + ++ E L         + LY+ Y PI+    E + G EAL++W H ++ 
Sbjct: 203 TREIECAYNKKRILAEQLQQLLSDPNQTSLYVCYQPILSCHSERL-GCEALLRWQHDEFD 261

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I     + IAEE  + K +  +++E++       W +  +     + IN++   L D  
Sbjct: 262 LIDPQYLIEIAEEYGLGKQLGTWIMEQVYLALKKEWHEYNHRLD--VSINLS-NALFDET 318

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   ++ +        + I L  +E++ + +   S  ++ +L K+ +   LDDFGT  S 
Sbjct: 319 LPTLIKDIFDHQESFLNSIILELTETMTIEDFAHSLAIINQLEKMKVRFALDDFGTGWSS 378

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ +A  +E T++A+ +     +++L
Sbjct: 379 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLAHQLEMTVVAEGVEQLAQLEQL 438

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++G D  Q  + + P+         +  F
Sbjct: 439 KQLGVDEFQGYYFSYPITKEEFATFCEHHF 468


>gi|325661924|ref|ZP_08150544.1| hypothetical protein HMPREF0490_01282 [Lachnospiraceae bacterium
            4_1_37FAA]
 gi|325471776|gb|EGC74994.1| hypothetical protein HMPREF0490_01282 [Lachnospiraceae bacterium
            4_1_37FAA]
          Length = 1125

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/437 (24%), Positives = 188/437 (43%), Gaps = 25/437 (5%)

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             + I  +KK           D LTG+ N  SF    ++       ++     +++ DI+ 
Sbjct: 698  LHSIDAEKKLDYNFW----HDALTGLYNLASF----SSYTKKRHFEELSSVGLVLADING 749

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K+IN+ +G + G+ VL+   R   E         RLSGN F II  + +       F  
Sbjct: 750  FKQINNTMGYSFGNQVLLDTARVFREYF-PDAYHFRLSGNEFCIICENASGK----YFYQ 804

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +    A PI L    I+             ++  S +   AE +M   K +       F
Sbjct: 805  QISLLQADPIVLRHDGISFGYHWM-----QKEVDFSILKSLAEDSMMEEKQKYYMETPYF 859

Query: 696  RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                  +       DL    +     +   P + L   +++G EALI++ H + G I+  
Sbjct: 860  AKRHRPTILQQTLRDL----KEERFLIYLQPKVDLSSRKLIGAEALIRYRHEERGLIAPD 915

Query: 756  EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             F+   E+  +I+ I+LF+LE+  R +  W+ +       I IN +   L++ E+   + 
Sbjct: 916  FFIPPLEKEHLIRYIDLFVLEQACRLLRRWQQEGRKT-FPISINFSRITLMEEEILPSLL 974

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             L+     SPS I++  +E++   + +    L  +LR+ G ++ LDDFGTK + LS L Y
Sbjct: 975  ELVHTYQISPSLIQIEITETIEEKDRDVLLTLSHQLRQAGFTIALDDFGTKYTNLSILTY 1034

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            + FD +K + SL+           I++ +I M + +   +IA+ I  E     LT MGC 
Sbjct: 1035 MDFDVLKLDRSLIQTLCFRASNQTIIKHVIQMCRELPVEVIAEGIENEEQAALLTSMGCP 1094

Query: 934  YIQDSHVASPLGFNSIL 950
              Q     +P+  +   
Sbjct: 1095 SAQGYLFGAPMPISEFE 1111



 Score =  155 bits (392), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 13/250 (5%)

Query: 456 IHINDRDNFRTILDSF-----VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           IH  D   F                   L+ E+R      +  W+      M +     +
Sbjct: 160 IHREDYPKFLETFSRKNLLANYANGIQELKLEYRHLTNFGKTCWVETTAHMMKDPVSGDI 219

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +   +DI   K+    +   +  D LT + N+ +    + + L+ S    +     ++
Sbjct: 220 RCLLYLHDIDAAKRERLTLENASRLDPLTKLYNKGAAETLIRSQLEAS--SPDACHAFII 277

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +KKIND+ G A GD VL    +RI +  +  DI+ R+ G+ F   + +  +   +
Sbjct: 278 IDLDHFKKINDLHGHACGDKVLKETAKRIQQHFRSDDIIGRIGGDEFIAFIKNIPSKDFL 337

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +R        ++     +T S+G    ++       + + A++A+YH+K RG N
Sbjct: 338 IQKLEKLR------YTVVPFRGILTYSMGICLTSNYGFDFEVLYEKADIALYHSKARGRN 391

Query: 691 HVESFRVSSF 700
               +     
Sbjct: 392 CFTFYTSVMH 401



 Score = 46.5 bits (109), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 431 TPDIATILGLASGSMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
           + +   + GL    M+    ++    I           +   +            + AAD
Sbjct: 4   SKETMHLYGL-PEIMNDVPESFVRSKIIPRKHAAAFLSMYREIQQGSPHSSCTVEILAAD 62

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +++W  I +  + N     +R IG+  +IT+ K+  
Sbjct: 63  GKYYWNTITMTTVFNGQHKPVRAIGVVENITQHKEME 99


>gi|218550803|ref|YP_002384594.1| phosphodiesterase [Escherichia fergusonii ATCC 35469]
 gi|218358344|emb|CAQ90991.1| putative diguanylate cyclase [Escherichia fergusonii ATCC 35469]
          Length = 649

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 188/435 (43%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 MQRHYEEQSENALRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    +LA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMVLAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +++ ++  +A  A + A  +G N ++ F      
Sbjct: 335 NERLPIESIQLRPSGSIGVAMFHGD-LSAEQLYGHAVSAAFTAMRKGKNQIQFFEPEQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN    L   P + +   +++  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHRFALWLQPQVDMTSGKVLSAEVLLRMQQPDGSWELPDGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++    P  + +N+++  L+   +   +  L+S
Sbjct: 454 RIESCGLMVTVGQWVLEESCRLLSAWQERGINMP--LSVNLSALQLMHPNMVPELLGLLS 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRVQPGMLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++R+II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PVDVLKIDKMFVEGL-PDDDSMIRAIIMLAQSLGLEMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK 951
               A  +  +   +
Sbjct: 631 GFLFARAVPIDLFAE 645


>gi|225568751|ref|ZP_03777776.1| hypothetical protein CLOHYLEM_04830 [Clostridium hylemonae DSM
           15053]
 gi|225162250|gb|EEG74869.1| hypothetical protein CLOHYLEM_04830 [Clostridium hylemonae DSM
           15053]
          Length = 911

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 178/451 (39%), Gaps = 22/451 (4%)

Query: 507 GDILRYIGIANDITEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G  L+ +     +T ++   E  L   ++ D LT   NR  F+  L  +      +    
Sbjct: 474 GAPLQTLCYFILLTYRRAENEQQLSRLSYHDTLTSFYNRNRFMKDLEAL-----QESKSS 528

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +D++  K++ND  G A GD +LV    ++  + +  D   R+ G+ F II     
Sbjct: 529 VGIIYLDVNGLKEVNDRRGHAEGDRMLVRAADKMKVIFRKED-CYRVGGDEFVIICTDIP 587

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              K  D    +++         E +    A+IG + W       ++++  A+  MY  K
Sbjct: 588 -KEKFEDKTAELKRIF-------EGDSRCNAAIG-SQWAGEFQNINQIVAKADAMMYEDK 638

Query: 686 HR-GGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
                   +  R      + + +     L   ++     +   P I   D   VG EALI
Sbjct: 639 KEFYRKSRKGNRYRHHSDEILQLADPRILKQEIDRKRFEVYLQPKISSADRTPVGAEALI 698

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           ++       +    F+ + EE   +  I+ ++ E +   + +W  +       I +N + 
Sbjct: 699 RYRSDDGTMVLPGNFLPLLEEARSVSQIDFYVFEFVCSQMEAWAKEGKKAS-PISVNFSH 757

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L      E ++ +  K    P+ I+L  +E          R L+  LR  G  +TLDD
Sbjct: 758 HSLRQPSFTERLKEICRKYAIPPTLIELEITEKAGDVTDTEMRRLIAGLRSEGFGVTLDD 817

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  + L+ L    FD +K + S++    E      I+R+I+   K     ++A+ I  
Sbjct: 818 FGTDHADLALLSTTEFDVLKLDRSMVKDIAENSKTQEIVRTIVESCKKTGIKLVAEGIEE 877

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           E  +  L   G +Y+Q    + P+       
Sbjct: 878 EEQLLALGDCGVEYVQGYLFSVPIPIREYEN 908


>gi|325844334|ref|ZP_08168110.1| PAS domain S-box protein [Turicibacter sp. HGF1]
 gi|325489201|gb|EGC91583.1| PAS domain S-box protein [Turicibacter sp. HGF1]
          Length = 574

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/545 (19%), Positives = 214/545 (39%), Gaps = 12/545 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S D  W +   RD    +     +LGLA  +       +   IH   R  F   ++
Sbjct: 30  ILENSHDGYWIYYDNRDVSWWSKQNYQLLGLADNNQIKDKNFFPTLIHPKYRKKFEESIE 89

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           S   +  GR Q   +V+ ++ ++ W+                 IG   D+++  +    +
Sbjct: 90  SLKTH--GRYQIVLKVKHSNGKYIWIQTSGTKYVMPIIKKSFTIGYNRDVSDLYEIAHEV 147

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              AF D  T   N +    R    L  S    +   T++ + I  Y+     L     +
Sbjct: 148 KYLAFHDRSTNTLNSEGLKRRFEE-LKSSIQYQDSFLTIIDLSITSYQS---GLTDKSNN 203

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           + L     R+  L      +AR+S ++F I+  +     +I      +   I   I +  
Sbjct: 204 EFLNFFVERLKSLFI-YSKMARISEHQFAILTHNL-ELNEIKTKLELLNNLIHNGIVINN 261

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DRVMIK 708
              +             +     ++    +  +  K +    V     +  +  + + ++
Sbjct: 262 YSFSGQFKAFCMELYPIEPYEQYLVYYEYVKRHLIKDKNEFFVTINASTKEKYLESIRVR 321

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +    + N EL L + PI+      +  LEALI+W+HP  G ++   F+    E+  IK
Sbjct: 322 NEFIQGLANDELVLYFQPIVNAKTNIVSKLEALIRWNHPNRGTLAPGSFLPYLYEISDIK 381

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ ++L+ + R I  +  +    P  + INI    L D  L + ++  +        +I
Sbjct: 382 QLDFWVLKEVLRTIHQYDHEGVEFP-KVSINITGVTLADETLVKYIEDNLKFYEVDAHKI 440

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E +++ N       L  L+K+G+ + LDDFGT  S + Y+  +    +K + S +
Sbjct: 441 CIEVTEQILIDNITIGNKNLETLKKMGVQIVLDDFGTGYSSIHYVNQLNAQVIKIDRSFI 500

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + +   AI++ I  +A ++   ++A+ I    ++  +    C+ +Q   ++ PL  
Sbjct: 501 KDIHQNKKTQAIVKLIRNLADDLAVELVAEGIETYDELSYVLDNYCELVQGYLISKPLPI 560

Query: 947 NSILK 951
             IL 
Sbjct: 561 EEILN 565


>gi|325681403|ref|ZP_08160929.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324106893|gb|EGC01183.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 660

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 179/438 (40%), Gaps = 15/438 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +     +   +  D LTGI N   F      +L+   TD + +   +  DI+ +K  N+
Sbjct: 220 LQNVNAHLSRISVHDELTGIHNMVYFRSEAEKLLNYVTTDRD-KVVFLFFDIENFKSYNE 278

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G+++L  +   I +      +++R S + F ++   E                +
Sbjct: 279 KYGFHGGNELLKKVADMIVDA-YPNSLVSRYSDDHFVVLTSDEGCEANAER--------L 329

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  ++ ++ E+ +    G       +   S     A  A    K    ++   +  +   
Sbjct: 330 SNEVSCMQDEVHLQLKCGAYKPAGEESDPSLACDKARFACNSIKKHFYSNFRFYDKTLED 389

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++   I   +  A+    + + Y P++     +IVGLEAL +WD P++G +    F+ 
Sbjct: 390 KFQLKQYIVNSIDNAITGEHIKVFYQPVVSTKTGDIVGLEALARWDDPQYGLLPPGAFIE 449

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I EE   I  +++ +++ + RD     D      + + +N +  D    ++   + A   
Sbjct: 450 ILEEYRQIHKLDICIIDNVCRDYRRATD-NGETFVPVSLNFSRLDFELCDIVSELDARAK 508

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K    P  + +  +ES +  N    +  + +LR++G  + LDDFG+  S ++ L    FD
Sbjct: 509 KYNVPPEFLDVEITESALSDNQGSLQEAMKKLRELGYKVWLDDFGSGYSSMNVLKDYSFD 568

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   + G  S  K   I+++I+ + + ++   + + +        L  + CD  Q 
Sbjct: 569 VLKIDMKFLRGFESNPKTRPIIQNIVNLTQTLDMISLTEGVETREQFDFLASINCDRAQG 628

Query: 938 SHVASPLGFNSILKLLKE 955
              + PL    + K L E
Sbjct: 629 YLFSKPLPLEELHKELAE 646


>gi|293374941|ref|ZP_06621237.1| PAS domain S-box [Turicibacter sanguinis PC909]
 gi|292646418|gb|EFF64432.1| PAS domain S-box [Turicibacter sanguinis PC909]
          Length = 574

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/545 (19%), Positives = 214/545 (39%), Gaps = 12/545 (2%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  S D  W +   RD    +     +LGLA  +       +   IH   R  F   ++
Sbjct: 30  ILENSHDGYWIYYDNRDVSWWSKQNYQLLGLADNNQIKDKNFFPTLIHPKYRKKFEESIE 89

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           S   +  GR Q   +V+ ++ ++ W+                 IG   D+++  +    +
Sbjct: 90  SLKTH--GRYQIVLKVKHSNGKYIWIQTSGTKYVMPIIKKSFTIGYNRDVSDLYEIAHEV 147

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              AF D  T   N +    R    L  S    +   T++ + I  Y+     L     +
Sbjct: 148 KYLAFHDRSTNTLNSEGLKRRFEE-LKSSIQYQDSFLTIIDLSITSYQS---GLTDKSNN 203

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
           + L     R+  L      +AR+S ++F I+  +     +I      +   I   I +  
Sbjct: 204 EFLNFFVERLKSLFI-YSKMARISEHQFAILTHNL-ELNEIKTKLELLNNLIHNGIVINN 261

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DRVMIK 708
              +             +     ++    +  +  K +    V     +  +  + + ++
Sbjct: 262 YSFSGQFKAFCMELYPIEPYEQYLVYYEYVKRHLIKDKNEFFVTINASTKEKYLESIRVR 321

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +    + N EL L + PI+      +  LEALI+W+HP  G ++   F+    E+  IK
Sbjct: 322 NEFIQGLANDELILYFQPIVNAKTNIVSKLEALIRWNHPNRGTLAPGSFLPYLYEISDIK 381

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ ++L+ + R I  +  +    P  + INI    L D  L + ++  +        +I
Sbjct: 382 QLDFWVLKEVLRTIHQYDHEGVEFP-KVSINITGVTLADETLVKYIEDNLKFYEVDAHKI 440

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E +++ N       L  L+K+G+ + LDDFGT  S + Y+  +    +K + S +
Sbjct: 441 CIEVTEQILIDNITIGNKNLETLKKMGVQIVLDDFGTGYSSIHYVNQLNAQVIKIDRSFI 500

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + +   AI++ I  +A ++   ++A+ I    ++  +    C+ +Q   ++ PL  
Sbjct: 501 KDIHQNKKTQAIVKLIRNLADDLAVELVAEGIETYDELSYVLDNYCELVQGYLISKPLPI 560

Query: 947 NSILK 951
             IL 
Sbjct: 561 EEILN 565


>gi|237804014|ref|ZP_04591599.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331025994|gb|EGI06050.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 279

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 71/268 (26%), Positives = 139/268 (51%), Gaps = 5/268 (1%)

Query: 688 GGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N+ + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W 
Sbjct: 2   GKNNFQFYQADMNATALERLELESDLRHALEQQEFTLYYQPQFSGDGKRLTGAEALLRWR 61

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +  ++F+ + EEL ++  +  ++L    R +  W       P  + +NI+++  
Sbjct: 62  HPRRGLVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQARVRVP-KVSVNISARQF 120

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D +L + +  ++ +T  SP+ ++L  +ES++M   E +  +L  L+ +G+S+ +DDFGT
Sbjct: 121 SDGQLGKRIAGILEQTGLSPACLELELTESILMREVEEAMHILDGLKNLGLSIAVDDFGT 180

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P D +K + + + G    E+   I R+II MA ++  ++IA+ +     
Sbjct: 181 GYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLSVIAEGVETHEQ 240

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++ L + GCD +Q      P+       
Sbjct: 241 LEFLRQHGCDEVQGYLFGRPMPPGQFEA 268


>gi|313905930|ref|ZP_07839286.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313469271|gb|EFR64617.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 1157

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/519 (19%), Positives = 196/519 (37%), Gaps = 41/519 (7%)

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +DR               G     +R    D ++H +      M   N   L  I  +
Sbjct: 67  HPDDRSMLGDA-GYHFATTGGTYDVLYRSLIND-EYHIIHAYGTHMFKENHVRLALIWYS 124

Query: 517 N---------DITEQKKSLEGILCNAF-------QDNLTGIPNRQSFLDRLTTILDLSAT 560
                     + +++   L      +         D LTG+P+   F + L  +      
Sbjct: 125 EHGIYKESECNESDEMLQLLRNQLMSRSLSIRESHDYLTGLPSMTYFFE-LAGVGCRDMR 183

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                PT++ +D +  K  N  LG+  GD+ L   +  +       +  +R S + F + 
Sbjct: 184 KSGQTPTILFMDFNGMKGYNQKLGLQEGDNYLKHFSDVLIRHF-SHENCSRFSADHFCVF 242

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   K       + + ++ P      E  +   +G   +    I+ S     A++A
Sbjct: 243 ----TEFQKAQREMQMILEEVSNPAV----ENRLPLRVGLYRYDDESISISGACDRAKIA 294

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKED------LCLAVENSELYLVYHPIIRLMDEE 734
                  G N+ ES       +    +++          A+    +   Y P IR  +  
Sbjct: 295 CD----SGRNNYESRVYEFSEAMMKALEKKQYIVENFDKALREGWIQPYYQPAIRTANSR 350

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I   EAL +W  P+ G +   +F+   EE   I  ++L+ML+R+  ++ +  D      +
Sbjct: 351 ICAEEALARWQDPEKGLLHPEDFIPALEEANCIHKLDLYMLDRMLENMSAQADAGYDV-V 409

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
              +N++  D    ++ + +++ +        R+ +  +ESV+  +       + R +++
Sbjct: 410 PQSVNLSRLDFYACDIVDEIRSRVDALNIPRDRVIVEITESVIASDISYMTKEVKRFKEL 469

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G  + +DD+G+  S    L  +PFD VK +   +     + K   IL  II MA ++   
Sbjct: 470 GFKIWMDDYGSGYSSPVILQDLPFDVVKIDRLFVQNIEDSSKSKIILAEIIKMAMSLGMD 529

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            IA+ +     +  L  +GC  +Q  +   PL F  I++
Sbjct: 530 TIAEGVETIEQVNFLKEIGCTMLQGFYYCKPLPFTEIMQ 568



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 103/286 (36%), Gaps = 29/286 (10%)

Query: 418  VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--------WLPYIHINDRDNF----- 464
            ++  D V D        ++I      +      N        W   I+  D+  F     
Sbjct: 882  IYTIDPVTDEYY---RYSSIFCPEPEAKQTAGSNFYAELRKIWEKEIYEEDQPYFFGRFK 938

Query: 465  RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS--NSNGDILRYIGIANDITEQ 522
            + I+   +  +   +   +R+   + +  + ++R   +     +  ++  I + +D+  +
Sbjct: 939  KEIILDDIRNKGKFVMNHYRLM-IEGKPVYAVLRATMIREKGRDKILMGIINV-DDVVRR 996

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN-LRPTVMVIDIDKYKKIND 581
            ++  E +   A  D LTG+  R+     +   +D         +  V V DI+  K+IND
Sbjct: 997  QEEYEAMEREAITDELTGVK-RKHAYQDVEKEIDEEILAGKKPKFAVAVFDINGLKEIND 1055

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
              G  +GD  ++   + I ++      + RL G+ F II     +  +I +      K  
Sbjct: 1056 TYGHQMGDQYIIDGCKIISKVF-RNTPIYRLGGDEFAIIARG-ADYDRIDELMEEFLKES 1113

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                +     +    S         +   +E+ + A+  MY  K  
Sbjct: 1114 EKNRSTGGVVVAAGMSKYV-----DEKNEAEVFRTADKRMYKNKEE 1154


>gi|91213035|ref|YP_543021.1| putative phosphodiesterase [Escherichia coli UTI89]
 gi|237703299|ref|ZP_04533780.1| yhjK [Escherichia sp. 3_2_53FAA]
 gi|91074609|gb|ABE09490.1| conserved hypothetical protein [Escherichia coli UTI89]
 gi|226902563|gb|EEH88822.1| yhjK [Escherichia sp. 3_2_53FAA]
          Length = 662

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|229560209|ref|YP_671506.2| putative phosphodiesterase [Escherichia coli 536]
 gi|300976749|ref|ZP_07173568.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|331659837|ref|ZP_08360775.1| protein YhjK [Escherichia coli TA206]
 gi|222035239|emb|CAP77984.1| Protein yhjK [Escherichia coli LF82]
 gi|300308486|gb|EFJ63006.1| diguanylate cyclase domain protein [Escherichia coli MS 200-1]
 gi|331053052|gb|EGI25085.1| protein YhjK [Escherichia coli TA206]
          Length = 651

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|191170297|ref|ZP_03031850.1| putative diguanylate cyclase [Escherichia coli F11]
 gi|190909105|gb|EDV68691.1| putative diguanylate cyclase [Escherichia coli F11]
          Length = 649

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|56461645|ref|YP_156926.1| signaling protein [Idiomarina loihiensis L2TR]
 gi|56180655|gb|AAV83377.1| Signaling protein [Idiomarina loihiensis L2TR]
          Length = 930

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 143/942 (15%), Positives = 319/942 (33%), Gaps = 62/942 (6%)

Query: 27  SPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR----RIEVSASSI 82
            P+FA +P+ +S     L L      Y     + QV + A  +        +++    + 
Sbjct: 17  PPAFAQDPLTVSPQSSRLMLNEHFN-YRVVNANLQVESIAIDEPQRWLSPEQLQAHNYAG 75

Query: 83  RHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIIS-VTPSEGFSLDRI 141
                W V  L N S++ L   +      L     +  D   +   S ++      L R 
Sbjct: 76  ERPNVWGVVPLFNRSNAPLTLHLHFADPYLEQVGVYLLDKNGQIESSNISRFSTPLLQRN 135

Query: 142 PNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVA 199
             S   +  +T+    +V   + +      +P I LW+P   +  +       G+  G+ 
Sbjct: 136 YLSHEQILPVTLPANKIVWLAVSVQQWPEQMPSIGLWQPGDLQLRLQQQQTALGVNAGIL 195

Query: 200 SLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLV-NLPSGELLIWRACSE 258
            LLA+   +   +  S +LI    +       +    G                 +    
Sbjct: 196 ILLALAAAVSARLFGSRLLISFGGLTLTFTLALLSHSGIWITYFTPYSPDIAAELKVYIS 255

Query: 259 IALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASI 318
             L  +L  F++ +  +    ++   I ++ +     L  +  +        +     + 
Sbjct: 256 QLLILALSWFIWEWSRFRFKFSRFNRIGYAVMMVAIALTILLPWLSEPWRLASVSWQINA 315

Query: 319 VLYYTYFIIYHGMKGYERA----VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGG 374
           +L +   +I   ++    A      ++    +I  W +              +       
Sbjct: 316 LLLWGGVVIGRSLQKQPVAGHKWQTVLMVLTIISAWLLVSPRYNPIWEGLSGLLLYSGLT 375

Query: 375 LVLIVILIGFTVIQ---HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           LV  + L+     +    V       +       R    +  +G+  +  +         
Sbjct: 376 LVTTMFLLALERYRFSRLVQRISNLKRNRKILRRRLWRILRRTGEGWFRVNPDGSIKQVN 435

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +  IL  A+ S+     +W                   +  +R  +  E      D +
Sbjct: 436 RQMIKIL--AAHSLKQIQMHWPKGF--------------SIEGQRQLVSIE----RLDGR 475

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
             W+ I + P  ++ G          D+T++ ++   +   A  D +TG+ N + F   L
Sbjct: 476 KVWLDIELFP--DNTGR-------MADVTKRMEAEVHLNFLAHHDAVTGLLNVREFRRLL 526

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
            + LD   T      +V +I ++  + I D  G    D  ++ LT  + +       +AR
Sbjct: 527 QSRLDRKKTT-----SVTIIRLNGLQVIADQAGADGRDQAILQLTLSLQQKAPKSARVAR 581

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITS 670
           +S     ++  +  +       A  + +       +  +R   +T   G A      + +
Sbjct: 582 ISEAEIALL--TNEDEQAAFAQAHRLLQVCREFRFSSEKRIFQLTGHAGIAYSHDESLAA 639

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFR----SDRVMIKEDLCLAVENSELYLVYHP 726
           S +++ A  A+  A  +G   V +   +             +  L  A+      L   P
Sbjct: 640 STIMRQAREAVQLAMQQGDYRVHTHSEADQIRLIGQAEEEWEARLKKALREENWQLFAQP 699

Query: 727 IIRL-MDEEIVGLEALIQWD-HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
           ++     E+    E L++   +     I+  +F+  A    ++   + +++  +      
Sbjct: 700 LVSAAKSEDKHCFELLLRLPGNESDEAIAPQQFLRAALNAGVMGKADRWLVREVIEHFNE 759

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
              +AN       IN++++ L D +    ++ ++  ++  P ++    +E       + +
Sbjct: 760 QPFEANRT-WRCHINLSAQSLEDVDFIRFIEQILKHSILQPEQLVFEVAEPDANEYFDET 818

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
             L   L+ +GI   LD FGT  +    +  +P   +K N   +           ++ S 
Sbjct: 819 YRLFRELKDLGIGTALDQFGTGFNSFRLMRQLPLTQIKVNRFWVQDMLVDAVDAELVASC 878

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           + +AK ++  + A  +  +    +LT++G DYIQ      P+
Sbjct: 879 VRIAKVLDIEVCAVGVESDEARIKLTQLGVDYIQGFVCGHPV 920


>gi|313681538|ref|YP_004059276.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154398|gb|ADR33076.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 657

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 194/421 (46%), Gaps = 30/421 (7%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               + D LTG+ NR+   ++L                +M+I+ID +++IND+ G   GD
Sbjct: 251 EHQFYFDTLTGLENRRRLTEKLEE---------RHSVFLMIINIDSFQEINDLYGEPAGD 301

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLL 648
            +L    + + E++   + L RL  + F  I  S  +  +  +FA  + + I+    N+ 
Sbjct: 302 LILKEFAQYLKEIMPKEEGLYRLHSDEFAHICTSGMDLNEFRNFAALISEKISQKSFNID 361

Query: 649 ER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFRSDR 704
           ER E++++A+IG +        S  +L NA++A+  AK    N   +  +  ++      
Sbjct: 362 ERSEVSLSATIGVSY------GSELLLVNADIALKLAKKTKKNFLIYDNTMAMTKEYEKN 415

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
               + L  A+E  ++  ++ PI+    + IV  EAL++    +   I+   F+ +A++ 
Sbjct: 416 FDWTKRLKKAIEEDKIVPLFQPIVDTKTQVIVKYEALMRMVDDQGFYIAPVHFLELAKKN 475

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   +   M+++      S          F+ INI+ +D+L+ E+   +   + ++   
Sbjct: 476 KLYHQLTKIMIQKTFEKFQSL-------TYFVSINISVEDILNKEINHFIVKTLEESGI- 527

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             +I     ES  + N ++    +  +++ G  +++DDFGT  S   YL  +  D +K +
Sbjct: 528 GHQIVFEIIESEGIENFDQVLEFINEVKQYGAKISIDDFGTGYSNFEYLMKLKVDYIKID 587

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GS++      +    I  SI+  AKN+    +A+ ++ +   +++  +G DY Q  +   
Sbjct: 588 GSMIKNIDSDKNSQMITTSIVSFAKNMNIKTVAEFVHSKNVFEKINELGVDYSQGYYFGE 647

Query: 943 P 943
           P
Sbjct: 648 P 648


>gi|149927811|ref|ZP_01916062.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Limnobacter sp. MED105]
 gi|149823433|gb|EDM82664.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Limnobacter sp. MED105]
          Length = 572

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/446 (23%), Positives = 198/446 (44%), Gaps = 21/446 (4%)

Query: 522 QKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +K  LE     A + D  TG  NRQ  +  L+ +   S  D++    ++ +++ +    N
Sbjct: 132 EKLLLEQAHRRAVYFDAGTGFLNRQGLVKTLSGLSTNSGDDND--LCLLSVNVSR----N 185

Query: 581 DVLGIAVGDD----VLVSLTRRIGELLKFPDILARLSGNRFGII---LISENNSLKIADF 633
                 V       +L  +  RI +     DIL R S N   ++   L    +S  IAD 
Sbjct: 186 QARRPEVDPRIRRNMLEKIVERIRDTF-KQDILCRWSDNVLVVLTNKLDWSADSTLIADT 244

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                 ++     +    +     +G A        ++E++ +A+   +  + RG   + 
Sbjct: 245 LCEFEANLNRVFTVDNIAVRPNMRLGLARPGVHGQHAAELVTHAQSVAHVIESRGLELLN 304

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                     +    I+  L   +E++EL L + PI  L    I GLEAL++W HP+ G 
Sbjct: 305 VLDPEIHDLAKRRKTIELGLAKGIESNELVLDFQPIEDLKTGRICGLEALVRWTHPELGR 364

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I  SEF+ +AE+  +I A+  +++E  ++ ++    Q +M  ++  +N ++  LL+ E  
Sbjct: 365 IMPSEFIGVAEDSGLIDALGDWVIESSSKKVLELHQQGHM--LWCAVNCSAGQLLNPEFP 422

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
              Q  I      P  I+   +ES  + +  R+   L +L+  G  + +DDFGT  + L+
Sbjct: 423 AKAQQTIRNAGLDPKWIEFEVTESAAIDDMTRTVDALNKLKAQGSQIAMDDFGTGYASLN 482

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL  +P D +K + S +      +    I++++I +A  +   + A+ I      + L +
Sbjct: 483 YLRQLPVDVLKIDKSFVMDLLEDKNSHMIVKAVIDLAHALGLIVHAEGIETAEQRESLIQ 542

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKE 955
           MGCD +Q    + P+  +S+   L +
Sbjct: 543 MGCDRLQGYWFSRPMDLDSLKNWLAK 568


>gi|325680257|ref|ZP_08159819.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324108074|gb|EGC02328.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 570

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 201/442 (45%), Gaps = 30/442 (6%)

Query: 535 QDNLTGIPNRQSFLD---RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
           +D+LTG+ +++ F     RL  +      ++N+    +V+DI+++  +N++ G + G+ +
Sbjct: 144 RDDLTGLFHKEFFFQYGKRLDEL------NNNMPMDAVVVDINRFHVVNELYGRSYGNMI 197

Query: 592 LVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           L  +   + E++     +  R   ++F + L   ++          ++  +   I ++++
Sbjct: 198 LKKIGESLHEIVSETGGLACRRDNDQFCVYLPHSDD----------LQYKLPQYIAVIDQ 247

Query: 651 EITVT-ASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRV 705
            I  +  S+ +  ++         +    A LA    ++   +  + +            
Sbjct: 248 RINDSNISLRYGIYSDDGSEKCMEQRFDYARLACQKLRNSYVSCFDFYNDEQHGKELYAE 307

Query: 706 MIKEDLCLAVENSELYLVYHPIIRL--MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  D+  A+   +  + Y P   +      +   EALI+W HP++G +S  +F+ + EE
Sbjct: 308 RLINDMDRALSEKQFRVFYQPKYSITGSQPRLSSAEALIRWFHPEFGMVSPGQFISLFEE 367

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I+ ++ F+    A  I  W+D      I + +N++  ++ +  L + ++ + ++   
Sbjct: 368 NGLIQKLDRFVWNEAAAQIRQWKDCYG-IDIPVSVNVSRVNMFNAHLADILENIAAQNGL 426

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             + + L  +ES    N ++    + +LR  G  + +DDFG+  S L+ L  +P D +K 
Sbjct: 427 DHAELLLEITESAYTDNSDQIVEAVNKLRMCGFRIEMDDFGSGYSSLNMLTTLPIDALKL 486

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +      EK   ++  +I +A+ +E  +IA+ +  +  ++ L R+GC+ IQ  + +
Sbjct: 487 DMKFIREICENEKNERLVGIMIDIARLLEVPVIAEGVETKEQMELLKRLGCNIIQGYYFS 546

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            PL       L+++     K+ 
Sbjct: 547 KPLPPEEFGILIEKELREKKDA 568


>gi|313679009|ref|YP_004056748.1| diguanylate cyclase/phosphodiesterase with pas/pac and gaf sensor(s)
            [Oceanithermus profundus DSM 14977]
 gi|313151724|gb|ADR35575.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Oceanithermus profundus DSM 14977]
          Length = 1108

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 178/437 (40%), Gaps = 41/437 (9%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             KK  +     A+ D LTG+PNR+ F++  + ++  +         ++++D+D+ K  ND
Sbjct: 702  WKKQKDQAAYLAYHDALTGLPNRRFFVELGSKLIARADR--GEPAALLMVDVDRLKTYND 759

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             LG   GD +L  + RR+   L   D++ RL G+ F  +L    ++         + +++
Sbjct: 760  TLGHPAGDVLLKEVARRLKAALFDGDVVLRLGGDEFAAVLRGC-DAGGAEKATRRILEAM 818

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSF 700
            A P+ +  R +  + ++G A       +  E+L  A+LA+  A+  G           + 
Sbjct: 819  AAPVQVEGRVLQPSITLGVAVAPGDGTSLPELLHKADLALLRAREEGRALAFFDAELEAA 878

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            RS    ++ +L  A+    L LV  PI+ L D      E L++W  P       + F+ +
Sbjct: 879  RSAERELEIELKSALTGGGLDLVVQPILDLRDGSYAHFEVLLRWKEP------PARFIAL 932

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            AE + +  A++ ++L+R           A      + +N+    L               
Sbjct: 933  AERVGLGPALDAYVLDRA-------EALARRLGKPVFVNLLPSTL--------------A 971

Query: 821  TLYS----PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                    P  +    +E  V+     +      L   G +L LDDFGT  + L+ L   
Sbjct: 972  VGVPQRPDPRWVGFEVTEHGVLKPEAHAHA--RELAAEGFALALDDFGTGYASLNLLYDF 1029

Query: 877  PFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            P   +K +  L+         K  A+L  ++P    +   ++A+ +  E  +  L  +G 
Sbjct: 1030 PLHLIKLDRGLILRALEQDDAKARALLEGLVPAMSGMGLEVLAEGVEDERHLAYLASIGV 1089

Query: 933  DYIQDSHVASPLGFNSI 949
             Y Q   +A P    + 
Sbjct: 1090 RYAQGYGIARPAPPENF 1106



 Score = 42.6 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 16/135 (11%)

Query: 403 DGER----QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
             ER     +  +      V   D+    +      A +  L      G     +P +H 
Sbjct: 429 AEERTKAELTAVLDALPQPVIMVDLAGRLLRFNRAAARVFELK-DEHRGRP---VPLLHP 484

Query: 459 NDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              + F   L+          L ++++ R+         +  +P+     +    + +  
Sbjct: 485 QGPEGFLKRLEQLRRGGEVPPLHFQWQGRS-------FRVHPQPVRGLGQEPAGVVAVFV 537

Query: 518 DITEQKKSLEGILCN 532
           D+T+ +K        
Sbjct: 538 DVTDLEKEAAFRHAL 552


>gi|169334567|ref|ZP_02861760.1| hypothetical protein ANASTE_00970 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259284|gb|EDS73250.1| hypothetical protein ANASTE_00970 [Anaerofustis stercorihominis DSM
           17244]
          Length = 702

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I NDI ++K     +   ++ D LT + NR  +++ +         +      ++ ID++
Sbjct: 280 IMNDIDKEKLLN-TLNKMSYYDALTDLGNRNHYINVVEHF----NENPPENIGIVYIDVN 334

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             K IND  G   GD +L      + ++      + R+ G+ F  +  +     +     
Sbjct: 335 GLKLINDSYGHDYGDILLKQTAELLKKVYDKH--IFRVGGDEFVALCPNI-EKHEFEKSV 391

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +R  +        +E  +  SIG A W   K    +++KNA+  MY  K         
Sbjct: 392 SRLRHLLK-------KEEEINISIG-AVWDKGKTELEKLIKNADNLMYLEKQSYYKSNLV 443

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +        +  ++     N++  ++  P I     +I G EAL++        I+ 
Sbjct: 444 KEHNYRSEVSKKLIREI----ANNKFTVLLQPQIETSTGKISGAEALVRKIDDDGNLITP 499

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+   E   +I+ ++LF+LE + + +  WR +   P I I IN++   +++  + + +
Sbjct: 500 DKFISSYEAKNIIRHVDLFVLESVCKILDKWRSEN-KPLIAISINLSRVTVMEYNIIDKI 558

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A+        + I +  +ES+   +      ++ RLRK G +++LDDFG+  S LS L 
Sbjct: 559 CAICDHYDIPHNFINIEVTESISKMSDAVLFEIIERLRKEGFTISLDDFGSDYSNLSILT 618

Query: 875 YIPFDTVKFNGS--LMTGSTEKRIAILRSIIPMAKNI-ETTIIAKDIYGEIDIKELTRMG 931
            I FD +K + S      +      I+  +I M K+I +T  +A+ +  +     L    
Sbjct: 619 KIEFDNLKIDKSIIDNINNNPNARIIIEHVIDMCKHIEKTKTVAEGVETKEQFDMLENYK 678

Query: 932 CDYIQDSHVASPLGFNSILK 951
           CD+IQ  + + P+       
Sbjct: 679 CDFIQGYYFSKPITVEEFEN 698


>gi|284923559|emb|CBG36654.1| putative signal transduction protein [Escherichia coli 042]
          Length = 651

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMNSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|218702294|ref|YP_002409923.1| putative phosphodiesterase [Escherichia coli IAI39]
 gi|218372280|emb|CAR20143.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 649

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIGQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|163801202|ref|ZP_02195101.1| GGDEF family protein [Vibrio sp. AND4]
 gi|159174691|gb|EDP59491.1| GGDEF family protein [Vibrio sp. AND4]
          Length = 606

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 104/450 (23%), Positives = 200/450 (44%), Gaps = 20/450 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           I+E+  K L  +      DNLTG+ NR    D L  +   +        ++  +DID +K
Sbjct: 162 ISERSDKLLNQLSYEVSHDNLTGLLNRSCLGDTLEALTQQATR----PFSLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLTSPNNAFRVAGDEFAFITYD----EDPVIICQEI 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I +  +     I+ T SIG A      + S +++ NA LA+   K      ++ +  
Sbjct: 274 LSKIEVGYSDKSNRISFTVSIGIARAPIHMLNSDDLILNASLALKDCKKYSDTRIQHYDT 333

Query: 698 SSFRSDRVM--IKEDLCL-----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E L         EN ELY+V  PI+    +     E L +W++  +G
Sbjct: 334 HLSALYHRQTQLIEALREQLRLSIDENEELYVVAQPIVDTTGDRWDYFEILARWNNKIYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS +EF+  AE+  +I  +   ++E       +   Q     + + IN ++ +L D+  
Sbjct: 394 NISPAEFIEAAEQSGLIIKLGERIIELACLAKQTLEKQLGY-KVKLSINCSAHELTDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ K  +      +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YVNFLALVLEKYHHQAKDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +      +K   ++  I  +A+ +E  +IA+ +  +  +++L
Sbjct: 513 LNYIHNYPIDSIKIDATFVRNMLANKKSEQVVLLIAQLAQLLEVDLIAEGVEDDRAMQKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             MGC +IQ    + P   + ++ ++ ++ 
Sbjct: 573 LEMGCHHIQGYLYSRPHSVDELIHIINKKQ 602


>gi|294493674|gb|ADE92430.1| putative diguanylate cyclase [Escherichia coli IHE3034]
 gi|315286200|gb|EFU45636.1| diguanylate cyclase domain protein [Escherichia coli MS 110-3]
 gi|323949770|gb|EGB45654.1| EAL domain-containing protein [Escherichia coli H252]
 gi|323954929|gb|EGB50709.1| EAL domain-containing protein [Escherichia coli H263]
          Length = 651

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|297623008|ref|YP_003704442.1| diguanylate cyclase/phosphodiesterase [Truepera radiovictrix DSM
           17093]
 gi|297164188|gb|ADI13899.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Truepera radiovictrix DSM 17093]
          Length = 761

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 105/433 (24%), Positives = 194/433 (44%), Gaps = 18/433 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K    +   AF D LTG+PNR    DRL   L           TVM +D+D +K +N
Sbjct: 316 ELRKERAALERLAFFDPLTGLPNRALLHDRLQHALA---QRGAGALTVMFLDLDDFKDVN 372

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD +L  ++RR+   L+  D +AR  G+ F ++L         +  A  +   
Sbjct: 373 DTLGHDTGDALLREVSRRLEACLRAGDTVARWGGDEFVLLLPGVGTEQAASRVARKILTC 432

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +A P  L E ++ V AS+G A +     +S ++LK+A++A+Y AK  G +    F     
Sbjct: 433 LAEPFALGEVDVRVAASLGVALYPGLAASSEDLLKHADIALYRAKEGGKHTYAFFTEDMN 492

Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
           R  +V + +  +L  A+ +  L L   P + L   E+  LEA + W HP+ G + +   +
Sbjct: 493 RRLKVRLSQGAELREALASGALTLALEPRVDLATLEVTALEARVVWPHPERGPLGADALL 552

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   ++          + +     + + +  +S+ L    +   +   +
Sbjct: 553 PLAEEAGLIGQLGERVIALTCEQAAQHKREGRTQRLSLTV--SSRGLRHAGIVPQLAHHL 610

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P++++L   +   + +P      L  L  +G+ L+L   G     L+ L  +P 
Sbjct: 611 RRTQLEPAQLELGIGDLATVESPTGL-ATLRALHGLGVQLSLAGLGVPGIPLNLLRQLPL 669

Query: 879 DTVKFNGSLMTGSTEK----------RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +V+ +GS +   T +             +++ ++ + +N+   ++AK I   +    L 
Sbjct: 670 RSVQLDGSFVRDLTLEGADAYAAGQLARNLIQLVVALGRNLGIAVVAKGIATPLQRALLR 729

Query: 929 RMGCDYIQDSHVA 941
            +GCD  Q     
Sbjct: 730 ELGCDEGQGPLFG 742



 Score = 58.0 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP---IRNWLPYIHINDRDN 463
             L V    + V  +      +T       +LGL++  + G       W           
Sbjct: 24  YRLMVEALSEAVLLYGADGRVLTHNRSAERLLGLSAAQLSGQAPLPAGWCVVREEGGELP 83

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQ 522
               L +    R   L     VR  + +  W+     P+    +G     +    DITEQ
Sbjct: 84  GLAALRTGRAQRNVALH----VRTPEGE-RWLCANAEPLFRGGDGRPYAAVVSLADITEQ 138

Query: 523 KKSLEGILCNA 533
           +++   +   +
Sbjct: 139 RRTRAQLERQS 149


>gi|158338091|ref|YP_001519267.1| PAS sensor diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158308332|gb|ABW29949.1| PAS sensor diguanylate cyclase, putative [Acaryochloris marina
           MBIC11017]
          Length = 600

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 16/435 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           +   +   A  D LT + NR+ F             ++    +V++ D+D +K  ND  G
Sbjct: 151 ANRELERLATMDGLTRVYNRRQFDSVFEREWHRLCREEQ-PLSVILGDVDHFKAYNDAYG 209

Query: 585 IAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKS--- 640
              GD  L  + + I  + +   D +AR  G  F ++L +  +       A A+R+    
Sbjct: 210 HQAGDQCLQQVAQAIARIAQRPADCVARYGGEEFVVLLPN-TDLSGALHVAEAIREEVEE 268

Query: 641 IAMPINLLEREITVTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---- 695
           + +P         ++ S+G A    +  I +S ++++A+ A+Y AK  G N V +     
Sbjct: 269 LNIPHRNSSVSKHISLSLGVASLIPNEDIPASSLIQSADQALYTAKDLGRNQVTANTSDS 328

Query: 696 -RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNIS 753
                  +  ++    +  A+E     L   PI     + E    E L++        I+
Sbjct: 329 TNPRQLANQTLLWTRRIEQALEKDYFQLYAQPIHPLSQNREKQCFEILLRLCDQPSTVIT 388

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ IAE+   +  I+ +++E +  D+   +        F  IN++++   + +L E 
Sbjct: 389 PGLFLPIAEQNGYMNRIDHWVIEHLFADLQKIKATMEQNTQF-FINLSARSCNNGQLIEF 447

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +Q  +++    P       SESV + N   +  L   L  IG  + LDDFG   S   +L
Sbjct: 448 LQQQLTRFNLYPEDFCFEISESVALKNIANAAKLSNELNAIGCQVALDDFGNGLSSFMHL 507

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             IP D +K +GS +           I+ +I  +AK++    IA+ +  E+ +  ++  G
Sbjct: 508 KSIPADYLKIDGSFVKDIGSDPVATEIVGAIHRLAKSMGMQTIAEYVESELILDTISSFG 567

Query: 932 CDYIQDSHVASPLGF 946
            D+ Q  + A     
Sbjct: 568 IDFAQGHYYAQAQPL 582


>gi|218560605|ref|YP_002393518.1| phosphodiesterase [Escherichia coli S88]
 gi|218691813|ref|YP_002400025.1| putative phosphodiesterase [Escherichia coli ED1a]
 gi|218367374|emb|CAR05153.1| putative diguanylate cyclase [Escherichia coli S88]
 gi|218429377|emb|CAR10195.1| putative diguanylate cyclase [Escherichia coli ED1a]
 gi|307628608|gb|ADN72912.1| putative phosphodiesterase [Escherichia coli UM146]
          Length = 649

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|331675020|ref|ZP_08375777.1| protein YhjK [Escherichia coli TA280]
 gi|331067929|gb|EGI39327.1| protein YhjK [Escherichia coli TA280]
          Length = 662

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|323975062|gb|EGB70171.1| EAL domain-containing protein [Escherichia coli TW10509]
          Length = 651

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|313899233|ref|ZP_07832749.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312955913|gb|EFR37565.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 467

 Score =  331 bits (850), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 181/425 (42%), Gaps = 10/425 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LT       F +R+  +LD       +  T+++++I+ +++IN   G+ +GD+VL 
Sbjct: 45  LHDPLTKGMKPIQFQNRVKRLLDK---KPAIAATLVLLNIEHFQRINHRYGMQLGDEVLC 101

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + + + + L   + +AR  G+ F + L+   ++  + +    ++K I         +  
Sbjct: 102 QVYKVLCQHLDANEFMAREEGDSFFLFLL-TQDTSLLQNRIDEIQKDIHK--QTENLQSI 158

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           +    G      ++     ++  A+LA+       G       +        ++      
Sbjct: 159 IRLRQGACLVDGTQKDVDLLINRAKLALRQYVSGKGCVFYDAALMEAVRREELLNSLFAS 218

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           ++   E  L   P + L   +    EAL++W HP++GNI  S F+ + E+   I  ++ +
Sbjct: 219 SLRQHEFQLYLQPKVTLKTNQCTHAEALVRWHHPRFGNICPSAFIPVFEKNGYIMELDRY 278

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           M E + R + + R+ A    + I INI+ +   +    E    +  +   +  +I+L  +
Sbjct: 279 MFEEVCRYLQT-RNAAKKEKLMISINISRRHFQNPAFLEEYAEIKERYGIADGQIELELT 337

Query: 834 ESVVM--GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           ESV          +  + R+ ++G   +LDDFG+  S L  L     D +K +       
Sbjct: 338 ESVFFNEEQIALVKQAVFRMHQLGFRCSLDDFGSGFSSLGLLKSFDVDAIKLDRIFFEDI 397

Query: 892 TEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +K+   IL  +I +A  +   ++A+ I  E  +  L    CD +Q  + A PL      
Sbjct: 398 AQKKAQDILCCLIELAHRLHIQVVAEGIETEEQLDFLRTTTCDMVQGYYYARPLPAAEYT 457

Query: 951 KLLKE 955
             L++
Sbjct: 458 AWLEQ 462


>gi|315295428|gb|EFU54758.1| diguanylate cyclase domain protein [Escherichia coli MS 153-1]
          Length = 651

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A H+G N ++ F +    
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTACHKGKNQIQFFDLQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|160938739|ref|ZP_02086091.1| hypothetical protein CLOBOL_03634 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438438|gb|EDP16197.1| hypothetical protein CLOBOL_03634 [Clostridium bolteae ATCC
           BAA-613]
          Length = 898

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/451 (23%), Positives = 189/451 (41%), Gaps = 22/451 (4%)

Query: 507 GDILRYIGIANDITEQKKSLEGILC-NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G +LR +G    ++ ++   E  L   ++ D LT   NR  +      +        +  
Sbjct: 461 GPLLRTLGYFLMLSYRRDENEKELNRLSYHDTLTSFYNRNRYTADTDNL-----RVTDSP 515

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ +D++  K IND+ G A GD VLV   RR+ E     D   R+ G+ F II   E 
Sbjct: 516 VGIVYLDVNGLKDINDLRGHAFGDKVLVECARRMRETFDGADF-YRIGGDEFVIICR-EW 573

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +     +    +RK+        ER+    A++G + W       S+++ +A+  MY  K
Sbjct: 574 SKEVFEEKVELLRKNF-------ERDSICRAAVG-SRWAEGSDDLSQIIADADARMYEDK 625

Query: 686 HR-GGNHVESFRVSSFRSDRVMIKEDLCLAVE--NSELYLVYHPIIRLMDEEIVGLEALI 742
                    S R      + + +     LA E   +   +   P +   D   VG EALI
Sbjct: 626 KEFYRRSPVSRRYRHQSDEVINLSNPEVLADELGKNHFVVYVQPKVSSADRSAVGAEALI 685

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           ++   +   +    F+ + EE   I  ++ F+ E I   +  W D+       + +N + 
Sbjct: 686 RYQSKEGSMVLPGNFLPLLEEAQTISQVDFFVFEFICSKVKEWADRE-KQAFPVSVNFSR 744

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L      E +  L  K   SP  +++  +ES+        + L+G+LR+ G ++ LDD
Sbjct: 745 FSLAQPSFVEQLVKLCDKYGISPGLLEIEITESIRNAPEIDLKELIGKLRQAGFTVALDD 804

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT+   LS L  + FD +K + +++       K  AI+ SI  + K +   ++A+ I  
Sbjct: 805 FGTEYVNLSLLSSVEFDVLKLDKTMVDDMVNNPKAQAIIESIAGICKKMGIRVVAEGIET 864

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           E  +  L   G +  Q    + P+      +
Sbjct: 865 EEQMSVLRTCGVETAQGYLFSRPIPVEEYEE 895


>gi|163736045|ref|ZP_02143469.1| PAS:GGDEF [Roseobacter litoralis Och 149]
 gi|161390672|gb|EDQ15017.1| PAS:GGDEF [Roseobacter litoralis Och 149]
          Length = 459

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 180/402 (44%), Gaps = 14/402 (3%)

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
              T  +    V+  D D  K++ND  G  +GD ++  +   + + L    I+ R  G+ 
Sbjct: 44  RKKTPPDKPILVLFADADNLKQVNDTFGHELGDALIAEIATILNDNLPSGSIICRKGGDE 103

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F     +  N       A  +   +     LL  E+ ++ S+G +   + + +    LKN
Sbjct: 104 FIAC-TAVKNFETAERVAAGITCMLNNRRFLLSHEVLLSCSVGASISVNYECSLHTQLKN 162

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV----ENSELYLVYHPIIRLMD 732
           A+ AMY AK  G   +  F        ++++ ++L        +   L   + PI R+ +
Sbjct: 163 ADTAMYLAKSSGKGQLRVF--DEHACSKLLMVQELAKVFFSDLKTKRLSFCFQPIYRMSN 220

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +IVG EALI+W H K+G I     + IA +   ++ +  F+L       I W       
Sbjct: 221 RQIVGAEALIRWHHEKYGMICPEIIVEIAGKSGRMRELGDFILSEACSAAIHWP-----L 275

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             F+ +N +  D L  +  + + + +       SR+++  +ES  M   +     L +LR
Sbjct: 276 DTFVSVNFSPSDFLRADFADFVLSELRAVGLDASRLRIEITESEKMLLTDDVFSNLSKLR 335

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIE 910
           + G+S+ +DDFGT  S ++ +  +P D VK + SL++   +++     + +I  ++++++
Sbjct: 336 QNGVSVGIDDFGTGNSTMANIDKVPVDFVKIDKSLVSDCHQRKSSKIFINAISKVSRHLK 395

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +IA+ +    +   L  +G  + Q  +   P+    +L L
Sbjct: 396 LEVIAEGVETVQEYAILRGLGVIFAQGFYFHRPISPERMLNL 437


>gi|332084570|gb|EGI89764.1| protein yhjK [Shigella boydii 5216-82]
          Length = 651

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 191/435 (43%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK 951
               A PL      +
Sbjct: 631 GFLFARPLPIEIFEE 645


>gi|307945685|ref|ZP_07661021.1| ggdef/eal domain-containing protein [Roseibium sp. TrichSKD4]
 gi|307771558|gb|EFO30783.1| ggdef/eal domain-containing protein [Roseibium sp. TrichSKD4]
          Length = 841

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 102/429 (23%), Positives = 191/429 (44%), Gaps = 9/429 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D+LT +PNR+   +R        AT          ID+D++K IND  G   GD
Sbjct: 402 EVEARTDHLTMLPNRRDMEERF----SSDATAFTDGDAFFNIDLDEFKPINDAFGHQTGD 457

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            VL  +  R+ +       + R+ G+ F +++     +   ++ A  + +S++ PI+   
Sbjct: 458 KVLKVVADRLRQFNYEGKKVWRIGGDEFAMLVPRVFYADLASNIADRLHESMSAPISHNG 517

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-SDRVMIK 708
            E+ V ASIG A +  + +   +M   A++AM+ AK     +VE  R +      R   +
Sbjct: 518 EELFVGASIGVAIFDHTVLHPQDMFSRADIAMFTAKQSPTTNVEIHRDTIQSRRYRQESR 577

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E++ VY P + L    I+G EAL +W        + +EFM + E      
Sbjct: 578 RRISNALENGEIFPVYQPQVCLSSGRIIGFEALARWRRSDGTLRAPAEFMDMVEYFGAQG 637

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L +  R    + S  +     P F  INI+ + L   E+  G   L ++     S++
Sbjct: 638 ELDLLIAGRTLSAMHSIHEGGEFSPRF-SINISEESLASREIRGGYLKLFNRYRGLTSKL 696

Query: 829 KLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            +  +E+ ++    ++    L      G+SL++DDFGT      +L    F+ VK + S 
Sbjct: 697 TVEVTENALIDRSAQAIRASLQSFAAAGVSLSMDDFGTGYGSFRHLQEYQFNEVKIDKSF 756

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           I+   + +A+ +   ++A+ +      ++L  +GC   Q    +  + 
Sbjct: 757 VDKVCLDRSSEVIISGFLDVARGLGADVVAEGVETSHQRQKLIELGCRRAQGYLFSRAIA 816

Query: 946 FNSILKLLK 954
             ++L+ L+
Sbjct: 817 ETALLEELR 825


>gi|300936722|ref|ZP_07151621.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
 gi|300458154|gb|EFK21647.1| diguanylate cyclase domain protein [Escherichia coli MS 21-1]
          Length = 651

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|298382901|ref|ZP_06992496.1| phosphodiesterase [Escherichia coli FVEC1302]
 gi|300897294|ref|ZP_07115730.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|301025864|ref|ZP_07189352.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|331685186|ref|ZP_08385772.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H299]
 gi|298276737|gb|EFI18255.1| phosphodiesterase [Escherichia coli FVEC1302]
 gi|300358942|gb|EFJ74812.1| diguanylate cyclase domain protein [Escherichia coli MS 198-1]
 gi|300395793|gb|EFJ79331.1| diguanylate cyclase domain protein [Escherichia coli MS 69-1]
 gi|331077557|gb|EGI48769.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H299]
          Length = 651

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|152968401|ref|YP_001364185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kineococcus radiotolerans SRS30216]
 gi|151362918|gb|ABS05921.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Kineococcus radiotolerans SRS30216]
          Length = 567

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 226/560 (40%), Gaps = 38/560 (6%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
            + AVL +   +   D+    +      A +L   SG + G     +         +   
Sbjct: 10  LARAVLSAAVGLVVTDLRGRVLGVDEAFAGLLRRPSGEVLGRGLAEV-LSSAEGAHDVEG 68

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +      +  E  V   D             + S GD +  +    D        
Sbjct: 69  TVARLLDGDPA-VTGEVPVLRGDGVVFRARTLSSLATTSGGDAV-VVLHLLD-----AHR 121

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E        D LT +P R + +  LT  L            V+  D+D+++ +N+ LG A
Sbjct: 122 ERPRAPGDHDPLTRLPGRAAAVTDLTARL----RAGTGLVGVLTCDLDRFRVVNESLGHA 177

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD+VL+++ RR+   ++  D++ARL  + F ++L    ++ +  D A  + +++A P+ 
Sbjct: 178 VGDEVLLTVARRLLAGVRGGDVVARLGDDEFAVVLAGLADAGEAVDVAHRLTRALAAPLE 237

Query: 647 LLE----REITVTASIGFASWTSSKI-----------TSSEMLKNAELAMYHAKHRGGNH 691
           +      +EI    S G A    +              ++ +L++A  A+  AK  GG  
Sbjct: 238 VPGPAGPQEIRCAVSTGLAVVDLAAPLQGAGPGAPELDAATLLRDANTALDAAKAAGGGC 297

Query: 692 VESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              F  +  R     +  + DL  A+E  EL + Y P++RL D    G EAL++W+HP+ 
Sbjct: 298 CRVFTDAMRRRAVRRLTVENDLRRALERGELRVHYQPVVRLADRRRTGFEALVRWEHPER 357

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +   EF+ +AEE  ++ A++  +LE +   +    +        + +N +++ L D  
Sbjct: 358 GLLLPEEFLDVAEECGLVTAVDAAVLEEVLGFLARHPEG------RVSVNTSARRL-DGT 410

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +   +++    P R+ +   E+ ++     +   L  L  +G+ + LDDFGT  S 
Sbjct: 411 FAPAVAHGLARHGLPPQRLAVELLETSLVPGDAVTERELHDLADLGVEVLLDDFGTGYSA 470

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LS L  +P   +K + S +        +  I  +++ +A     +   + +        L
Sbjct: 471 LSDLRRLPVGGLKLDRSFVGDLPADATSDRIAAAVVGLAVGFGLSSTCEGVETAAQAAHL 530

Query: 928 TRMGCDYIQDSHVASPLGFN 947
              G    Q S   +P    
Sbjct: 531 AAQGWRSAQGSLFGAPAPEE 550


>gi|261210573|ref|ZP_05924866.1| GGDEF family protein [Vibrio sp. RC341]
 gi|260840358|gb|EEX66929.1| GGDEF family protein [Vibrio sp. RC341]
          Length = 618

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 96/455 (21%), Positives = 199/455 (43%), Gaps = 25/455 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR      +  IL  S         +++ D++++K++ND +
Sbjct: 167 RSADYQQFLAWHDPLTRLKNRNY----IVKILKTSRLGKQEPVALILFDLNRFKELNDTI 222

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+ +   + +         AR+  + F ++L   N       F   +   + 
Sbjct: 223 GYASGDLLLIKIAGLLTQRCHPFAYQCARIGADEFAVLLHPCNG--NAEFFIRNLWNDLT 280

Query: 643 MPINLLEREITVTASIGFASWTSSKIT------SSEMLKNAELAMYHAKH--RGGNHVES 694
             +   +    ++ ++G  +  +  IT      ++ +L NA+LA+  AK    G     +
Sbjct: 281 KLVQDNDPTKRLSVAMGVVTCQTQDITQTSTLRANSLLNNADLALNIAKKTPDGQVVYYT 340

Query: 695 FRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             + S  + + ++ E L       + S LYL Y PI+    + + G EALI+W H ++G 
Sbjct: 341 REIESAYNKKRILAEQLQKLMLDPDQSHLYLCYQPILSRNPKRL-GCEALIRWQHHEFGF 399

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           I+    + IAEE  + K +  +++E++       W++        + IN++   L D+EL
Sbjct: 400 INPQYLIEIAEEYGLGKKLGAWIMEQVYLALQNDWKNYNRRLD--VSINLS-NSLFDDEL 456

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  +        + I L  +E++ + +   S  ++ +L K+ +   LDDFGT  S L
Sbjct: 457 PDLVTDIFGSHENFLNAIILELTETMTIDDFAHSMSIIEKLEKMKVRFALDDFGTGWSSL 516

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L ++ F  +K + S +      +     + SI+ ++  +   ++A+ I     + +L 
Sbjct: 517 YQLNHLRFSKLKIDKSFVDNMNRNQQQAIFIASIVSLSHQLGMEVVAEGIEQMTQLDQLK 576

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           ++G D  Q  + + P+            F     +
Sbjct: 577 QLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 611


>gi|332308728|ref|YP_004436578.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176057|gb|AEE25310.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 833

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 178/437 (40%), Gaps = 11/437 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +   +L  I      D+LTG+ N +     +   L      +     V+ + I   + I 
Sbjct: 371 QHHGALTKIDRLTQYDSLTGLFNSRYMEQFVHQELSK----NTDEVAVISLGICNLELIT 426

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G    D V++   +R+         ++R     F  ++    +   +      +  S
Sbjct: 427 EPCGSQAADRVILETAKRLKTTAGRASHISRAESGEFF-LVTKLMDMDSLRMLCEVLLGS 485

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
               + + E  I +    G A           +   A +A   A H G        ++  
Sbjct: 486 TTQVLEVNEYSIEIETCAGIAF--GQAENFKALCDQAHIAKNRA-HIGTYGFFDEGMNGV 542

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             +R+++   L  A+ +S+L L Y P + L    ++G+EAL +W   + GN+S  +F+ +
Sbjct: 543 SKERLLLSYSLKKAINDSQLKLFYQPQVCLKTMRVMGVEALARWYSSEHGNVSPEKFIQL 602

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE++  I  ++++ ++     +  WR      P  + +N++  +L  + L + +  ++  
Sbjct: 603 AEKIGEIDRVSMWAIKAACEQMAYWRTIGVSVP-TVSVNLSQLNLNIDGLDQYVDRILKS 661

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S + L  +E+           ++  LR IG+ L++DDFGT  S L+ L  +P   
Sbjct: 662 YHLPASCLILELTETATSELTPSKMNMILALRDIGVRLSMDDFGTGFSSLANLASLPVSE 721

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +           ++ SII M   +  T++A+ +  +  +  L    C  IQ  
Sbjct: 722 IKIDKSFVQAIATDERFNVLVSSIIDMGNKLGLTVVAEGVESKQQLDLLRSYNCPIIQGF 781

Query: 939 HVASPLGFNSILKLLKE 955
             +  +  + +  L+K+
Sbjct: 782 IYSKAVSADELTLLVKK 798



 Score = 42.6 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 14/131 (10%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGS---MHGPIRNWLPYIHINDRDNFRTILDSFVG 473
            +   D     +        I G  S     +    + +   I   D             
Sbjct: 135 ALMILDCDYKVIQINKAFTNIFGYTSSEIYGLRPRDKLFKETISSEDERKI-----DVFN 189

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKKSLEGIL- 530
             +    +        NQ  W       MS      +   Y+   +D+T+ K+  E    
Sbjct: 190 ATKEPFDFTVSTLTKTNQEVWANFTCSQMSEDWVIDEKAYYVVFISDVTQAKQLEELKRV 249

Query: 531 ---CNAFQDNL 538
                +  D L
Sbjct: 250 GLSMLSTSDPL 260


>gi|332996907|gb|EGK16526.1| protein yhjK [Shigella flexneri K-272]
          Length = 644

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 213 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 267

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 268 VLKETQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 327

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 328 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 386

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 387 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDSLID 446

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 447 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 504

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 505 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 564

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 565 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 623

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 624 GFLFARPLPIEIFEESYLEEK 644


>gi|318056409|ref|ZP_07975132.1| sensory box/GGDEF family protein [Streptomyces sp. SA3_actG]
          Length = 739

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 113/495 (22%), Positives = 212/495 (42%), Gaps = 17/495 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A   +   +   D         P +   L L + S+ G     L  + +    +   
Sbjct: 66  HRAAFDAAPLPMALVDEAGTITAANPALHDYLALPAASLPGRPLTHLTALGLT--PHTAP 123

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      RR  L    R+ +      W  +R+  +++  G +L       D +      
Sbjct: 124 GLPEVFTGRRHHLVCTRRIASPRGGETWAELRLEHLASVRGALL----TVRDTSLGHDLR 179

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLGI 585
             +     +D LT +  R  FLDRL   L+         R  + V+ +D ++ +N   G 
Sbjct: 180 ARLRTAEREDPLTRLAGRAHFLDRLADTLEEHGLRGGRGRVGLCVLGLDGFRHVNTAHGH 239

Query: 586 AVGDDVLVSLTR-------RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            VGD +L ++          +        +LARL G+ F +++       ++ + A  + 
Sbjct: 240 LVGDHLLRAVAARLARLAPLLASAHGEAPVLARLGGDEFALLVGETTGPGQLTELAATVL 299

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + +  P ++  R + V+AS G A   + + + +E+L+    A+  AK  G      F  +
Sbjct: 300 RELREPYDIAGRRLAVSASAGVAELRARETSPAELLRAVTTALGWAKAEGRGRWALFDSA 359

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     +   L  AV + E  L Y P++ L D  + G+EAL++W HP++G ++ + 
Sbjct: 360 RREDGAHQDLLATALRPAVRDGEFELEYQPLVALADGTLHGVEALVRWRHPRFGRLAPNR 419

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQ 815
           F+ +AE    I  +  ++L        SW+  +    P ++ +N+  + L D+++   + 
Sbjct: 420 FIDVAERDGSIVELGRWVLRTACAQARSWQLARPGARPPYVSVNVTVRQLWDSDVVADVA 479

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++++T   PS ++L  +ES V+G   R    L  L  +G+ + +DDFGT  S LSYL  
Sbjct: 480 DVLAETRLPPSLLQLELTESEVVGQTGRPLRALQELSDMGVRIAIDDFGTGYSNLSYLSR 539

Query: 876 IPFDTVKFNGSLMTG 890
           +P   +K +GS + G
Sbjct: 540 LPVSVLKLDGSFVRG 554


>gi|293407152|ref|ZP_06651076.1| phosphodiesterase [Escherichia coli FVEC1412]
 gi|291425963|gb|EFE98997.1| phosphodiesterase [Escherichia coli FVEC1412]
          Length = 633

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 202 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 257 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 317 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 376 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 436 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 554 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 612

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 613 GFLFARPLPIEIFEESYLEEK 633


>gi|218707163|ref|YP_002414682.1| putative phosphodiesterase [Escherichia coli UMN026]
 gi|218434260|emb|CAR15178.1| putative diguanylate cyclase [Escherichia coli UMN026]
          Length = 649

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|215488806|ref|YP_002331237.1| putative phosphodiesterase [Escherichia coli O127:H6 str. E2348/69]
 gi|331649351|ref|ZP_08350437.1| protein YhjK [Escherichia coli M605]
 gi|215266878|emb|CAS11319.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|323189324|gb|EFZ74607.1| protein yhjK [Escherichia coli RN587/1]
 gi|331041849|gb|EGI13993.1| protein YhjK [Escherichia coli M605]
          Length = 651

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|300916742|ref|ZP_07133453.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
 gi|300415964|gb|EFJ99274.1| diguanylate cyclase domain protein [Escherichia coli MS 115-1]
          Length = 651

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|332750042|gb|EGJ80454.1| protein yhjK [Shigella flexneri K-671]
 gi|332751241|gb|EGJ81644.1| protein yhjK [Shigella flexneri 2747-71]
 gi|333012513|gb|EGK31894.1| protein yhjK [Shigella flexneri K-304]
          Length = 644

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 213 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 267

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 268 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 327

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 328 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 386

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 387 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 446

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 447 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 504

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 505 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 564

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 565 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 623

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 624 GFLFARPLPIEIFEESYLEEK 644


>gi|306816119|ref|ZP_07450257.1| putative phosphodiesterase [Escherichia coli NC101]
 gi|305850515|gb|EFM50972.1| putative phosphodiesterase [Escherichia coli NC101]
 gi|330909586|gb|EGH38100.1| protein yhjK [Escherichia coli AA86]
          Length = 649

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|281180567|dbj|BAI56897.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 651

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|160899203|ref|YP_001564785.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
 gi|160364787|gb|ABX36400.1| diguanylate cyclase/phosphodiesterase [Delftia acidovorans SPH-1]
          Length = 765

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 196/439 (44%), Gaps = 18/439 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +  +    +  + F D  + + N       L                + VI I+  + + 
Sbjct: 328 DLVQVHSQLRHHLFHDPASELLNSTGLEQLLNRT-----QAQRRPVAIHVIGIEHLQVLA 382

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D L   + + +++ L +++   +   D+ ARL+   F +     +        +I + + 
Sbjct: 383 DTLVPGMDNPLILQLAKQLRSCIGQNDVAARLAIEEFCVAQYEGDPDSMAKTLSIRLGE- 441

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                 L ER I ++  +G A    +    +++L++   AM  A+ +G      F  S+ 
Sbjct: 442 --KRYMLGERSILLSVCVGTAVC-KNNEDWNQLLRDGRAAMERARSQGRGRFVKFEPSAD 498

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +++++++D   A+  S+L++ Y PI  +   +I G E+L++W+ P  G++    F+
Sbjct: 499 GPMQEQLLLEQDFRSAIGTSQLFMAYQPICHVATGKISGFESLMRWNSPARGSVPPGVFI 558

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   ++  I+  +          W        I + IN  + + LD  +   ++  +
Sbjct: 559 PMAERRGLLLPIDQMVERSPLLVANGWPS-----DISVSINCPAFEFLDPGMAVQLKDHL 613

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +   +P R  +  +ES ++ + E+   ++ +++ +G++L +DDFG+  + LSYL   PF
Sbjct: 614 DRAGLNPERCYIEVTESALLQDDEQVLSVMRQVKALGVNLAIDDFGSGHASLSYLHRFPF 673

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S +    +     AI+ + + +++ +   ++A+ +        L ++GC Y+Q
Sbjct: 674 NLIKIDRSFIQAMDKDAGAAAIVEATLALSRRLGLEVVAEGVETTEQFLHLQQLGCTYVQ 733

Query: 937 DSHVASPLGFNSILKLLKE 955
              +A P+    +L  L+ 
Sbjct: 734 GFLIARPMNEEHVLPFLES 752


>gi|295109689|emb|CBL23642.1| FOG: EAL domain [Ruminococcus obeum A2-162]
          Length = 572

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 175/420 (41%), Gaps = 16/420 (3%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR-RI 599
           +  R  FL+++   L+  A  D     ++ IDI+++K  N+  G   GD +L ++++  +
Sbjct: 7   LYCRSEFLEKVNDFLESYALSDRC---IISIDIERFKLFNNWYGQEAGDILLTNISQYLL 63

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
                   +     G+ F + +  ++           + K+I   I +  +       IG
Sbjct: 64  RIQQMKGYLAGYFGGDHFFMCIPDDD------QLISLIYKTIRSYIGIHSQNEGFLPIIG 117

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVEN 717
             S        + M  NA+LA    K      +  F     +       +  D+ + +EN
Sbjct: 118 IYSIPDDHPDVATMCNNAQLAGSDVKGNFNKRISYFTDEIINQLEKEQQLIHDVTVGLEN 177

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E      P        IV +EAL +W  P  G +S  EF+   E   MI +++ ++ + 
Sbjct: 178 KEFTFYLQPKCNSETGAIVSMEALSRWISPVRGFVSPGEFIPFLENNGMITSLDTYIWDA 237

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           + + +  W+       + I IN++  D+    + E +Q LI+K   SP  + +  +E+  
Sbjct: 238 VCQTLSYWKHDHLYV-VPISINVSVADIETINVPEYLQDLITKYDLSPEMLLVEITETAF 296

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT---GSTEK 894
             N    R  + +L + G  + +DDFG+  S L+ L     D +K +   +    G+ +K
Sbjct: 297 SENNIIVRETIDQLHQHGFCVLMDDFGSGYSSLNMLKDTNVDILKLDMKFIEMNPGNCQK 356

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            I I+ SI+ MA  +   IIA+ +     I  L  M C Y Q  +   P+  +    LL 
Sbjct: 357 GIQIIDSIVNMAHKLNLPIIAEGVESPEQIAMLHSMNCIYAQGYYFYKPMPISDAEDLLT 416


>gi|170684297|ref|YP_001745804.1| putative phosphodiesterase [Escherichia coli SMS-3-5]
 gi|170522015|gb|ACB20193.1| putative diguanylate cyclase [Escherichia coli SMS-3-5]
          Length = 649

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAVLRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|237734038|ref|ZP_04564519.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382864|gb|EEO32955.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 743

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 100/481 (20%), Positives = 202/481 (41%), Gaps = 25/481 (5%)

Query: 494 WMIIRIRPMSNSNGDILRYI------------GIANDITEQ----KKSLEGILCNAFQDN 537
           W ++ + P S  + +I   +            GI   IT      + + + +   A  D 
Sbjct: 265 WYLLSVIPASVVDNNINGMLFLGYMMLGCCLLGILYLITRIVLMYRNNQKRLEEVALVDE 324

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +TG  +   F  RL             + T++  +I K++ IND+ G   G+ +LV + +
Sbjct: 325 VTGCGSYTRF--RL--AGGDILKSTKSKYTMVYFNILKFQYINDLYGYDEGNLILVKIAK 380

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            +  LL+  +  AR+  + F  +L  ++ +         ++       +  E    +   
Sbjct: 381 ILNNLLQEKEFCARIQADHFVALLQYDSVTQLKKRAEYMIKNMENAINSNDEAAYRIKMI 440

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAV 715
           +G     +       M+  A   +         +   +  +  +       +++    A+
Sbjct: 441 VGIYLIENYNDRIESMVDRAATVIRDENRHELENCNFYNDNIRQRMYKNKELEDLFEEAL 500

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N E  + + P      + + G EAL++W   K G+IS  EF+ + E    I  ++ ++ 
Sbjct: 501 HNHEFEVYFQPKYSTKKKRLYGAEALVRWKSSKLGSISPGEFIPVLERSSNIIELDEYVF 560

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
               + I  W D        I +N++   L   +  E    +I       + I+L  +E+
Sbjct: 561 VITCKQIRKWLDDGLEVA-PIAVNVSQLHLYRQDFVESYLKVIDAYQIPYNLIELEMTET 619

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
            + GN +  + +L + RK+ I++++DDFG+  S +  L  +P D +K + +++       
Sbjct: 620 SLFGNRDILKDILNKFRKLKITVSMDDFGSGYSSIMMLESMPIDCLKIDKTMIDDLEVNS 679

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K   IL+SII +A+++   ++A+ +      +EL RM  DYIQ  + A PL  +   K+L
Sbjct: 680 KAKEILKSIISLAQSLGLVVVAEGVEQAGQYEELIRMKVDYIQGYYCARPLPLDEYEKIL 739

Query: 954 K 954
           K
Sbjct: 740 K 740


>gi|194431313|ref|ZP_03063606.1| putative diguanylate cyclase [Shigella dysenteriae 1012]
 gi|293416974|ref|ZP_06659611.1| phosphodiesterase [Escherichia coli B185]
 gi|332282090|ref|ZP_08394503.1| yhjK [Shigella sp. D9]
 gi|194420768|gb|EDX36844.1| putative diguanylate cyclase [Shigella dysenteriae 1012]
 gi|281602886|gb|ADA75870.1| diguanylate cyclase/phosphodiesterase [Shigella flexneri 2002017]
 gi|291431550|gb|EFF04535.1| phosphodiesterase [Escherichia coli B185]
 gi|320183461|gb|EFW58310.1| Protein yhjK [Shigella flexneri CDC 796-83]
 gi|324116600|gb|EGC10517.1| EAL domain-containing protein [Escherichia coli E1167]
 gi|332104442|gb|EGJ07788.1| yhjK [Shigella sp. D9]
          Length = 662

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|323966048|gb|EGB61488.1| EAL domain-containing protein [Escherichia coli M863]
          Length = 651

 Score =  331 bits (849), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 191/435 (43%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SECLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK 951
               A PL      +
Sbjct: 631 GFLFARPLPIEIFEE 645


>gi|327251175|gb|EGE62868.1| protein yhjK [Escherichia coli STEC_7v]
          Length = 649

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 191/435 (43%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SECLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK 951
               A PL      +
Sbjct: 629 GFLFARPLPIEIFEE 643


>gi|291539177|emb|CBL12288.1| FOG: EAL domain [Roseburia intestinalis XB6B4]
          Length = 740

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 189/467 (40%), Gaps = 21/467 (4%)

Query: 498 RIRPMSNSNGDILRYIGIANDIT------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           R++ + ++   ++  I +   ++        ++S + ++  A+QD +T         D  
Sbjct: 283 RMQVVMDAINSLMMIILVVISVSVGVYIYSWRQSKKELMSLAYQDPVT-------LGDNF 335

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
                 + +  +    ++ +D+  +K IN   G+  GD+VL  +           ++ A 
Sbjct: 336 AAFKKKAKSKKDGVGWLIAMDVTDFKLINSTCGVKKGDEVLRVIWEIFETETGENELAAH 395

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           ++ +RF +  + EN           +RK   +P  L    +     I             
Sbjct: 396 VNADRFILFWMDENQENIKQRLEHVIRKIEEIPERLEIPNLFPVFGIFHTIVLDE---ID 452

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +  NA  A +  K R   H   +   +     +   ++E    A+EN E  + Y P   
Sbjct: 453 PLYGNAVQAKHQIKGRRDRHYIFYDELNHESIQENRELEEHFETALENEEFEIWYQPKYS 512

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               ++VG EAL++W       I   +F+ + E    I  ++ ++   + R    W+ Q 
Sbjct: 513 AHSRKLVGAEALVRWRRADGALIPPLKFIPLFERNGNIIRLDEYVFRAVCRQQKEWQKQG 572

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + +NI+   L  + + E  +++I         I+L  +ES  + N E    LL 
Sbjct: 573 QKM-LPVSVNISRVSLYYSSVVEKYESIIRSFDLDSKYIQLEITESATIDNNEIF-NLLE 630

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKN 908
           +    G  + LDDFG+  S L+ L  + FDT+K + SL+    +     +L SI  +A++
Sbjct: 631 QFHTAGFKILLDDFGSGYSSLAALNRMHFDTIKLDKSLVDYIGDDNGEKLLNSITKLAQS 690

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               I A+ +     +  L  + CD IQ  + + PL      + LKE
Sbjct: 691 FGMEITAEGVETVEQLMFLCNLDCDDIQGYYFSHPLPVKEYEECLKE 737


>gi|118589260|ref|ZP_01546666.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
 gi|118437960|gb|EAV44595.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
          Length = 757

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 188/440 (42%), Gaps = 11/440 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ +      F D LTG+PNR++ L+ +  +      +  LR   ++ID+ ++KK+ND  
Sbjct: 305 KTQQEFENLGFHDPLTGLPNRRALLNTIRNL---PPAEPGLRTGAILIDLREFKKVNDRF 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L  +  ++ +  +  D L R  G  F +       + +    A  + + I+ 
Sbjct: 362 GDHNGDSLLRQVAEQLNQHAEPDDFLCRTGGTEFLLFRPRLKKAAQFEQLAFTLLQEIST 421

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +      + A+ G    +     S  +L +A LA+  AK +G      F  +   + 
Sbjct: 422 DRIIGNNRSAIEANAGIFISSPGDQISDHILTDAALALRAAKQKGPRKFGRFTPAMRTAF 481

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I ++L  A++   +   + P + +   E+VG EAL +W            F+  A
Sbjct: 482 EESDQIAKELQNALKGGNIVAWFQPQVNIHTGEVVGAEALARWIDDD-TIRYPGAFLPAA 540

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            E   ++ I   +         S   +     + + +N+ +  L   +  + +   + + 
Sbjct: 541 MEAGYMEDIEDAVRSHALNFAASLSGKT-RSAMHLGLNVTASLLTSTKAVDVLHKQVIEL 599

Query: 822 LYSPSRIKLSFSESVVMGNPERS--RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
              P+ I L   E+V++     +  R  + RL ++G  + LDDFGT  S +S L  +  D
Sbjct: 600 GLKPAHINLEILEAVMIDEVTATPIRQNIARLSELGFFIELDDFGTGHSSISSLRDLNVD 659

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S ++G            ++I +AK+++ +++A+ +    +   L R GCD IQ 
Sbjct: 660 RVKIDRSFISGVDTDPALQKFTSALINLAKSLDISVLAEGVETAGERDWLKRHGCDVIQG 719

Query: 938 SHVASPLGFNSILKLLKERF 957
             ++  +    +  ++ ++ 
Sbjct: 720 FLISQAVPDAELATMILKQN 739


>gi|227883690|ref|ZP_04001495.1| phosphodiesterase [Escherichia coli 83972]
 gi|26110592|gb|AAN82777.1|AE016768_195 Protein yhjK [Escherichia coli CFT073]
 gi|227839270|gb|EEJ49736.1| phosphodiesterase [Escherichia coli 83972]
 gi|307555632|gb|ADN48407.1| putative diguanylate cyclase [Escherichia coli ABU 83972]
          Length = 662

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F +    
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDLQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|315126251|ref|YP_004068254.1| diguanylate phosphodiesterase [Pseudoalteromonas sp. SM9913]
 gi|315014765|gb|ADT68103.1| diguanylate phosphodiesterase [Pseudoalteromonas sp. SM9913]
          Length = 717

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 115/710 (16%), Positives = 259/710 (36%), Gaps = 28/710 (3%)

Query: 253 WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIAR 312
           +       ++ S     F  L  ++                  L    F   +  A +  
Sbjct: 13  FNLIYIAVITISFFTIAFSLLLASKRFYTFSANALLLTIVAGSLSMNLFLTDLELAKVGS 72

Query: 313 ITLASIVLYYTYFIIYHGMKGYE-----RAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           + + S  +     + Y     Y         ++I    L     I   +         +I
Sbjct: 73  MFMYSCPIIALMLLGYRTALAYGILNIIPFYMIINNVDLSGYSGIASQLPEADLYITGLI 132

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                  + L          +        +  +    E        S       D     
Sbjct: 133 FLFFNICIPLATARTIVAAKRLNKTMLNANSFLKDKNELYRTLFTESNKAKIIVDENLVI 192

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
                    + GL +      +R  +  +          I +  + Y+    +  ++  A
Sbjct: 193 TDLNQHAIEMFGLKNSLKEKAVR--IDGLFPALNSKELNIKNQIIEYKSRYYKSNYQQIA 250

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
               +     R+    +   + L    I  +++      +      F+D+ T +PNR+ F
Sbjct: 251 MSTNY-----RVYDFYDCTQEQL----IKQNLS---MMEQENKRLRFRDSQTKLPNREWF 298

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
             +   +             ++V      + +N  L  A    +L++  +R+  + + P 
Sbjct: 299 EMQCDRLTSKYQKG----FYIVVTQSANSEYLNLKLNKADSQSLLITAYKRLKAMSEGPL 354

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           + A + G + G I+ S ++  +     I ++ ++    ++       +   GFA      
Sbjct: 355 LCASIEGGKLGFIIGSSSSEQQ-NKLLIQIKSTLDQAYDVFGTNYQQSFLFGFAKCPEHG 413

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
             S+ +L NA  A+  A +    +  + + S    ++  I   L  A++ ++L + Y P 
Sbjct: 414 ENSAIVLSNACEALKLADYNSPFNGYNQKQSQAFMEKYEISMLLDEALQQNDLSVHYQPK 473

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +     E +GLEAL +W     G++S + F+ IAEE  MI  +   +++++   I  W  
Sbjct: 474 VNAK-GECIGLEALARWHSSVLGSVSPAVFIPIAEEYRMISRLTDLIIQKVCAQIAQW-S 531

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +  +P + + INI+  D    +    +   ++     P++I+L  +E+ +  N   S  L
Sbjct: 532 KVGLPLLPVAINISLLDFSQADFMSKLVKYLADFNVKPNQIELELTETSLEANQVHSLKL 591

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPM 905
           +  L+  G ++T+DDFG   S ++ L   P D +K + SL++   S+ ++ ++++++  M
Sbjct: 592 MQTLQDWGFTITVDDFGVGYSNIARLADYPIDKLKLDRSLISKVTSSTRQKSLVKAVHVM 651

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
              +    +A+ +  E  +  ++ MGC   Q  + + P+      + + +
Sbjct: 652 CDELNIKCVAEGVETEEQVLIMSEMGCKEFQGYYFSKPMSAQVYAEYINQ 701


>gi|312968147|ref|ZP_07782357.1| protein yhjK [Escherichia coli 2362-75]
 gi|312286972|gb|EFR14882.1| protein yhjK [Escherichia coli 2362-75]
          Length = 649

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPRTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|319936573|ref|ZP_08010987.1| hypothetical protein HMPREF9488_01820 [Coprobacillus sp. 29_1]
 gi|319808371|gb|EFW04931.1| hypothetical protein HMPREF9488_01820 [Coprobacillus sp. 29_1]
          Length = 640

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 189/423 (44%), Gaps = 10/423 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT +PNR      +  +++    D      ++VI +  +KKIN+  G A+G+++LV  
Sbjct: 221 DSLTNLPNRSELFQMMEILIEKYGHDP---FVLLVISLRDFKKINESYGHAMGNELLVKF 277

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           +  +  +    + + R +G+ F I++  E     +      + K    P  + +    V+
Sbjct: 278 SEFLSSIA-PLNSVYRFNGDEFAILIQHEQ-RHLVKQIIDLLDKKTISPWIIQDYSFYVS 335

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
              G A++  S  T+ ++L   E A+  AK      V     +   S      I E L  
Sbjct: 336 TVAGVATYPQSATTAEKILNAVEYAVIQAKRDSSKQVHYCDENIMNSINRRERIIEILKD 395

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            +      L Y PII L   +    E+L++  +   G +  +EF+ IAEE  +I  I   
Sbjct: 396 KIAKQSFELYYQPIIDLKTGKYDFAESLVRIPNSSLGPLYPNEFIPIAEETGLIIEITYQ 455

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +LE+    I     +       + +N ++    ++ L   +  +I       S+IK+ F+
Sbjct: 456 ILEKACEFINHLSKENIHIK-SVHVNFSAYQFNESNLSNKVIEIIESHHIPLSKIKIEFT 514

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           ES +  N E        + + GI + LDDFGT  S ++ +  IPF T+K + SL+     
Sbjct: 515 ESTIAKNVEVVTHFANYVAQKGIRMGLDDFGTGYSNIATVIGIPFGTIKLDRSLILAAMD 574

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            EK   ++++I    +++  +++A+ +  +   + +     D++Q  + A P+    +++
Sbjct: 575 NEKSAGLVKNITRSFQDLGCSVVAEGVETKEQNQFVKDCQIDFVQGFYYAKPMPEKDVIE 634

Query: 952 LLK 954
            LK
Sbjct: 635 FLK 637


>gi|121997142|ref|YP_001001929.1| diguanylate cyclase/phosphodiesterase [Halorhodospira halophila
           SL1]
 gi|121588547|gb|ABM61127.1| diguanylate cyclase/phosphodiesterase [Halorhodospira halophila
           SL1]
          Length = 565

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 191/418 (45%), Gaps = 10/418 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNL-RPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           D ++G P++Q     L   LD         R +V+V+  D Y ++    G  VG  ++  
Sbjct: 129 DPVSGAPSQQPLRQDLGRTLDPPVPGRTPNRLSVLVVIFDNYTELVHTFGPEVGVRLIRG 188

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L  R+         +  L G RF +++    +  ++      +R+  A P+      + V
Sbjct: 189 LVGRLQAACGAEARVYHLHGERFAVVV----DQQRLEAVRACIREQAAEPLVAGGVPLYV 244

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCL 713
             + G A +      + ++++ A +A   A  +G    V          + +++      
Sbjct: 245 NLTFGRADYPEHGRHAEQLIQCATIAGDLATRQGERERVYDASSDQSSRENLVLLSGFRR 304

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+   EL L + P   L  E + G EAL++W HP+ G ++   F+   E   +I  +  +
Sbjct: 305 ALAGGELCLHHQPKWHLGRERVTGTEALLRWQHPEHGLLTPVRFIPQLENSHLIHELTPW 364

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++    RD+   + ++      + +N+++++L D+ L   M+  + +T  SP ++++  +
Sbjct: 365 VVRAALRDLADLQARSRD--WQVAMNLSARNLNDDGLLGDMERALGETGTSPEQLEVEVT 422

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES V+ +P+R+  +LGRLR  G+ + +DDFG   + L YL  +P  T+K + SL+     
Sbjct: 423 ESAVLADPDRASRVLGRLRDWGVGVAIDDFGAGQTSLGYLRRLPASTLKIDRSLICQLAP 482

Query: 894 --KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                 I+ S+  + + +   ++A+ +     ++ + R GCD +Q   V  P    ++
Sbjct: 483 GSSDHRIVESVAGLGRRLGMEVVAEGVEDRATLEAVRRAGCDAVQGYGVCPPRPLETV 540


>gi|333013407|gb|EGK32779.1| protein yhjK [Shigella flexneri K-227]
          Length = 633

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 202 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 257 VLKETQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 317 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 376 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDSLID 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 436 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 554 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 612

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 613 GFLFARPLPIEIFEESYLEEK 633


>gi|312972199|ref|ZP_07786373.1| protein yhjK [Escherichia coli 1827-70]
 gi|310334576|gb|EFQ00781.1| protein yhjK [Escherichia coli 1827-70]
          Length = 644

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 213 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 267

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 268 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 327

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 328 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 386

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 387 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 446

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 447 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 504

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 505 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 564

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 565 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 623

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 624 GFLFARPLPIEIFEESYLEEK 644


>gi|229106368|ref|NP_756203.2| putative phosphodiesterase [Escherichia coli CFT073]
 gi|300971349|ref|ZP_07171418.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|301046598|ref|ZP_07193738.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300301436|gb|EFJ57821.1| diguanylate cyclase domain protein [Escherichia coli MS 185-1]
 gi|300411273|gb|EFJ94811.1| diguanylate cyclase domain protein [Escherichia coli MS 45-1]
 gi|315295812|gb|EFU55129.1| diguanylate cyclase domain protein [Escherichia coli MS 16-3]
 gi|324007317|gb|EGB76536.1| diguanylate cyclase domain protein [Escherichia coli MS 57-2]
          Length = 651

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F +    
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDLQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|331655155|ref|ZP_08356154.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli M718]
 gi|331047170|gb|EGI19248.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli M718]
          Length = 633

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 202 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 257 VLQEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 317 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 376 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 436 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 554 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 612

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 613 GFLFARPLPIEIFEESYLEEK 633


>gi|291284901|ref|YP_003501719.1| putative diguanylate cyclase [Escherichia coli O55:H7 str. CB9615]
 gi|290764774|gb|ADD58735.1| Putative diguanylate cyclase [Escherichia coli O55:H7 str. CB9615]
          Length = 662

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|84385809|ref|ZP_00988839.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Vibrio splendidus 12B01]
 gi|84379125|gb|EAP95978.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Vibrio splendidus 12B01]
          Length = 809

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 181/449 (40%), Gaps = 23/449 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR+SF+  L   +  S    +    ++  DI  ++KIND+ G  V
Sbjct: 346 ELKFEAEFDQLTKLANRRSFIRHLDVRIKSSM---SPHCYLVCWDIIDFRKINDLYGAKV 402

Query: 588 GDDVLVSLTRRIGELL----------KFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           GD+VLVSL + + E L               +ARL GN+F  IL        I +    +
Sbjct: 403 GDNVLVSLAKTLRETLQNQQSSFGFSCSDYSIARLGGNQFIAILE-VGEHQSINEEIENI 461

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA-ELAMYHAKHRGGNHVESFR 696
             ++     L      +  SI             E+     +  + +AK           
Sbjct: 462 NNTLTGTTFLDYYGFRL--SIATGVLPVDTPKFEEIWHRCIDEMLINAKDHSDGESRIVY 519

Query: 697 VSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        I++ L     +    L + PI      +I G E LI+          
Sbjct: 520 GEELLHSLERHDVIEKRLLECCASDNFELRFMPIFNAKTLQIDGAECLIRCPALFDIKAG 579

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE+  +I  ++++++    +       + +     + INI++ +L +    + 
Sbjct: 580 PDEFIPVAEKSNLISKLDMWVISTAIKTYKEL-AEIHQYKGTLSINISAMELYNRNFADN 638

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +    PS I +  +E+  + + + +   +  +R +G+ ++LDDFGT  +  + L
Sbjct: 639 IRKVLERYQVPPSNIIIEITETSYVKSSKLTVQTIESIRSLGLKVSLDDFGTGYTAFNQL 698

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P D +K + S +      +    ++ S++ +  + +T ++ + +        L +  
Sbjct: 699 LHYPVDELKIDKSFIDNIVHDKADRKMVESMVNLGHSCDTFVVGEGVESLEQYHHLRKAN 758

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960
           CD IQ    + PL +   ++  ++  P  
Sbjct: 759 CDLIQGYFFSQPLTYIEFIEFARDHNPQT 787


>gi|82545893|ref|YP_409840.1| phosphodiesterase [Shigella boydii Sb227]
 gi|157155547|ref|YP_001464999.1| putative phosphodiesterase [Escherichia coli E24377A]
 gi|187732092|ref|YP_001882219.1| putative phosphodiesterase [Shigella boydii CDC 3083-94]
 gi|209920989|ref|YP_002295073.1| putative phosphodiesterase [Escherichia coli SE11]
 gi|229089131|ref|NP_839360.2| putative phosphodiesterase [Shigella flexneri 2a str. 2457T]
 gi|260846318|ref|YP_003224096.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|260870255|ref|YP_003236657.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|300815255|ref|ZP_07095480.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300922354|ref|ZP_07138476.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|301326678|ref|ZP_07220002.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|309796167|ref|ZP_07690578.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|81247304|gb|ABB68012.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|157077577|gb|ABV17285.1| putative diguanylate cyclase [Escherichia coli E24377A]
 gi|187429084|gb|ACD08358.1| putative diguanylate cyclase [Shigella boydii CDC 3083-94]
 gi|209914248|dbj|BAG79322.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|257761465|dbj|BAI32962.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|257766611|dbj|BAI38106.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|300421294|gb|EFK04605.1| diguanylate cyclase domain protein [Escherichia coli MS 182-1]
 gi|300532147|gb|EFK53209.1| diguanylate cyclase domain protein [Escherichia coli MS 107-1]
 gi|300846653|gb|EFK74413.1| diguanylate cyclase domain protein [Escherichia coli MS 78-1]
 gi|308120228|gb|EFO57490.1| diguanylate cyclase domain protein [Escherichia coli MS 145-7]
 gi|323179520|gb|EFZ65087.1| protein yhjK [Escherichia coli 1180]
 gi|323944500|gb|EGB40572.1| AL domain-containing protein [Escherichia coli H120]
 gi|324021168|gb|EGB90387.1| diguanylate cyclase domain protein [Escherichia coli MS 117-3]
 gi|332083999|gb|EGI89206.1| protein yhjK [Shigella dysenteriae 155-74]
 gi|332996206|gb|EGK15833.1| protein yhjK [Shigella flexneri VA-6]
          Length = 651

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|331670361|ref|ZP_08371200.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA271]
 gi|323174179|gb|EFZ59807.1| protein yhjK [Escherichia coli LT-68]
 gi|331062423|gb|EGI34343.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA271]
 gi|332089347|gb|EGI94451.1| protein yhjK [Shigella boydii 3594-74]
 gi|332763468|gb|EGJ93707.1| zinc-dependent peptidase [Shigella flexneri 2930-71]
          Length = 633

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 202 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 257 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 317 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 376 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 436 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 554 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 612

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 613 GFLFARPLPIEIFEESYLEEK 633


>gi|187933099|ref|YP_001884384.1| signaling protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721252|gb|ACD22473.1| putative signaling protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 751

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 205/448 (45%), Gaps = 10/448 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++  + +    + + +  + I   AF DN+TG      F   +  +L     + N    +
Sbjct: 293 LIFLVLLIYVNSYRNRKEKLIKDIAFVDNITGGKTLTKFKMDIKEVL---VENMNSSYAL 349

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +  DI ++K IND+ G   G+ +L  ++  +   L + ++  R+  + F ++L    +  
Sbjct: 350 VEFDIVRFKIINDIWGYKTGNFLLKHISDILENKLLYKEMFCRVRDDLFILLL-KYKDKS 408

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            I D   A+  S+    N  +     + S G      ++   ++M+ N       +K   
Sbjct: 409 DIIDRINALDNSMRFFDNGTKEVPNFSLSYGVYVIDGTEEDINKMIDNVAFTRETSKSDC 468

Query: 689 GNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
              +  + +        +  I++ +  A+ N +  L   P   +  E  +G EAL++W++
Sbjct: 469 NEFIGFYDIRLQSKLIKQKQIEDVMYSALTNRQFELYLQPKYDIKLESCIGAEALVRWNN 528

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P+ G I+  +F+ + E+   I  +++F+ + +   I  W++      I I +NI+  +L 
Sbjct: 529 PEKGLINPIDFIPLFEKNGFIVNLDMFIFDEVCSKINKWKENNIKL-IPISVNISRINLK 587

Query: 807 DNE-LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           + +   + +  + +K   +P+ I++  +ES +  + +     L RL+ +G S++LDDFGT
Sbjct: 588 NVDYFIKNISEIFNKYDINPNLIEIEITESAIFNHYDNMLEALLRLKAMGFSISLDDFGT 647

Query: 866 KCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+ L  +P DT+K +   +    S++K   ++ +I+ M K ++  +I + +     
Sbjct: 648 GLSSLNILKDLPIDTIKLDREFLNSKDSSKKGEIVITNIVRMVKELDLNVICEGVETYEQ 707

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILK 951
            + L+ +GC+  Q    A P+      +
Sbjct: 708 AEFLSEVGCNNAQGYLYARPMPVKDFEE 735


>gi|191165232|ref|ZP_03027075.1| putative diguanylate cyclase [Escherichia coli B7A]
 gi|193061660|ref|ZP_03042757.1| putative diguanylate cyclase [Escherichia coli E22]
 gi|193068584|ref|ZP_03049546.1| putative diguanylate cyclase [Escherichia coli E110019]
 gi|194428703|ref|ZP_03061240.1| putative diguanylate cyclase [Escherichia coli B171]
 gi|218556080|ref|YP_002388993.1| putative phosphodiesterase [Escherichia coli IAI1]
 gi|218697239|ref|YP_002404906.1| putative phosphodiesterase [Escherichia coli 55989]
 gi|256020876|ref|ZP_05434741.1| putative phosphodiesterase [Shigella sp. D9]
 gi|307314343|ref|ZP_07593950.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Escherichia coli W]
 gi|30043451|gb|AAP19171.1| hypothetical protein S4206 [Shigella flexneri 2a str. 2457T]
 gi|190904634|gb|EDV64340.1| putative diguanylate cyclase [Escherichia coli B7A]
 gi|192932450|gb|EDV85047.1| putative diguanylate cyclase [Escherichia coli E22]
 gi|192958235|gb|EDV88676.1| putative diguanylate cyclase [Escherichia coli E110019]
 gi|194413286|gb|EDX29571.1| putative diguanylate cyclase [Escherichia coli B171]
 gi|218353971|emb|CAV00436.1| putative diguanylate cyclase [Escherichia coli 55989]
 gi|218362848|emb|CAR00478.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|306906058|gb|EFN36578.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Escherichia coli W]
 gi|313647619|gb|EFS12069.1| protein yhjK [Shigella flexneri 2a str. 2457T]
 gi|315062808|gb|ADT77135.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|320198344|gb|EFW72947.1| Protein yhjK [Escherichia coli EC4100B]
 gi|323376604|gb|ADX48872.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Escherichia coli KO11]
          Length = 649

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|304393892|ref|ZP_07375817.1| putative eal/ggdef/pas/pac-domain-containing signaling protein
           [Ahrensia sp. R2A130]
 gi|303294091|gb|EFL88466.1| putative eal/ggdef/pas/pac-domain-containing signaling protein
           [Ahrensia sp. R2A130]
          Length = 968

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 185/415 (44%), Gaps = 8/415 (1%)

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             FL+  T  +  +  D+     ++ + I  +    + LG  +   +L    R++   L+
Sbjct: 533 TQFLENATRSIVRAQ-DEEKSLAILQLGIASWDYFEEALGEDLSQLLLRFAKRQVDIALR 591

Query: 605 FPDILARLS-GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
             D +  L    +  I L     S  ++     +      PI + ++ + ++  +G A +
Sbjct: 592 EQDRVTLLEETGQMLIELPDVEASDDVSWIVKRILDRFNEPIEVGQKTVYLSCRVGAALY 651

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSEL 720
                 +  + +NA +AM  A+         F    +    S  + I+  +  A++ ++ 
Sbjct: 652 PQDGQDTLTLSRNAAIAMRRAQLDDTLEELRFYSADMVQTSSRTLEIETGIREALQANQF 711

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            LV+ PI+   D  +   E L++    +   +   + + IAE   +I  I+++++     
Sbjct: 712 ELVFQPIVNATDTSLTAAETLLRCTSERLRGVRIDQIIDIAERSSLIADIDMWVVNNSIH 771

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +  W          + +N+++  +   +  + +   I+   +SPSRI++  +E+  MG 
Sbjct: 772 QMQLWDQAGVHLA-KLSVNLSANQITKPDFMDMVVERIASCHFSPSRIQIEVTETAKMGG 830

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898
            E +   L RL+ +G+ + LDDFGT  + L+Y+  +  D +K + S + G  +      +
Sbjct: 831 LEVAAQQLKRLQDMGVHIALDDFGTGQASLTYVQRLHPDVIKIDRSFIDGLNKNHANATM 890

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + ++  MA ++  TI+A+ +  E +++ L  + CDYIQ   ++ P+  +++   +
Sbjct: 891 VAAVTAMAHSLGITIVAEGVETEAELEFLRHISCDYIQGYFISKPIPADAMRDWI 945



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 107/307 (34%), Gaps = 25/307 (8%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER   A     + V   D     +        + G A G   G   N LP+  ++ R   
Sbjct: 174 ERVQKAFDTLSEGVIILDERERVLLANSAFEAMYGSAGGLETGTRINSLPWRMVDGRAKA 233

Query: 465 R-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 S +     + + +  +R A  Q   + +     +    + +  I    ++T+ K
Sbjct: 234 GGYPWHSAIKEGLEKREEQLSLRTASGQVLNLNVNATVFTGDKNETIGAIVTFANMTDNK 293

Query: 524 ---------------------KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                                +  + +   + +D LTG  NR++F  +    L  +    
Sbjct: 294 QSADQLAKAVSLLEETQREVERQKQELNQLSNRDALTGCMNRRAFFGQFEPELAEAK-FG 352

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               TV+++D+     I    G AV D ++          L     + R     F + L+
Sbjct: 353 AQPTTVLMLDVHGLAGIKASFGPAVSDALIRCAADSARSGLTNNAPVGRYGSEGFCVALV 412

Query: 623 SENNSLKIADFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              +  +  + A  ++ + +    ++      VT  +G A+  S   +++E+++ +  A+
Sbjct: 413 GI-DQDQAVEIANLIKATFSDRTADIASGANAVTLCVGIANDRSDDCSATELVRRSAQAL 471

Query: 682 YHAKHRG 688
             A  +G
Sbjct: 472 TAAMQKG 478


>gi|300907575|ref|ZP_07125211.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|301306690|ref|ZP_07212747.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|300400692|gb|EFJ84230.1| diguanylate cyclase domain protein [Escherichia coli MS 84-1]
 gi|300838083|gb|EFK65843.1| diguanylate cyclase domain protein [Escherichia coli MS 124-1]
 gi|315254054|gb|EFU34022.1| diguanylate cyclase domain protein [Escherichia coli MS 85-1]
          Length = 651

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTAHHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|187478764|ref|YP_786788.1| signaling protein [Bordetella avium 197N]
 gi|115423350|emb|CAJ49884.1| putative signaling protein [Bordetella avium 197N]
          Length = 454

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 179/406 (44%), Gaps = 13/406 (3%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
                ++     +  + ++ +  +  ++ +L +A    +L  +  R+ +      ++AR 
Sbjct: 51  RARAQTSMRRAKQGALFLVKLIHHPALSAMLSVADNRALLAMVAERLQQQS-EDFLVARY 109

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
           + + F +I     ++ +I++FA  + + ++ P +L  + + V   I  + +     +  E
Sbjct: 110 ASDSF-LIWAPATSASEISEFAPYILEQLSWPYDLRGQPLIVDFRIASSVYPDHGNSFDE 168

Query: 673 MLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAVEN---SELYLVYHPII 728
           + +  ++A+      G +       +   +     ++ DL +A+ +    +  + Y P+ 
Sbjct: 169 LERGVQIALMQMDEDGPHWNVFEPAMLERQRHYQSLEHDLRVALASSSMDQFDIHYQPVF 228

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 I G EAL++W HP  GN+S +  + +AE   +I A+  ++L+      ++W + 
Sbjct: 229 DTNTGNIEGCEALLRWHHPVHGNVSPATAIELAERTGLIVALGAWVLDTACARAVTWPEH 288

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  + +N++ + +   EL   +   ++ T  +P R+ L  +ESV +   ER    L
Sbjct: 289 -----WRLHVNLSVRQMYAEELSMQVAHTLANTRLAPHRLVLEITESVFILQYERHVATL 343

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
             LR  G+ + LDDFG   S L++L  +P D VK +   +           ++ +++ M 
Sbjct: 344 NGLRARGVQVALDDFGVGYSSLTHLRRLPIDWVKVDRGFIAELESDPVSQEVVSALMGMC 403

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
             +   ++A+ I        L R+GC Y+Q   +  P+    I  L
Sbjct: 404 HALGLMVVAEGIETVAQRDILNRLGCRYMQGFLLGRPVPAQEIRLL 449


>gi|229774931|ref|YP_690895.2| putative phosphodiesterase [Shigella flexneri 5 str. 8401]
          Length = 651

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SKRLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|170018242|ref|YP_001723196.1| putative phosphodiesterase [Escherichia coli ATCC 8739]
 gi|194435715|ref|ZP_03067818.1| putative diguanylate cyclase [Escherichia coli 101-1]
 gi|226524755|ref|NP_417986.4| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|331644239|ref|ZP_08345368.1| protein YhjK [Escherichia coli H736]
 gi|298286893|sp|P37649|YHJK_ECOLI RecName: Full=Protein YhjK
 gi|169753170|gb|ACA75869.1| diguanylate cyclase/phosphodiesterase [Escherichia coli ATCC 8739]
 gi|194425258|gb|EDX41242.1| putative diguanylate cyclase [Escherichia coli 101-1]
 gi|226510982|gb|AAC76554.4| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|323939491|gb|EGB35700.1| EAL domain-containing protein [Escherichia coli E482]
 gi|331036533|gb|EGI08759.1| protein YhjK [Escherichia coli H736]
          Length = 662

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|110616923|gb|ABF05590.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 649

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SKRLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|300822075|ref|ZP_07102218.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
 gi|300525438|gb|EFK46507.1| diguanylate cyclase domain protein [Escherichia coli MS 119-7]
          Length = 651

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|260857633|ref|YP_003231524.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257756282|dbj|BAI27784.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
          Length = 651

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|317054933|ref|YP_004103400.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315447202|gb|ADU20766.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 988

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 111/584 (19%), Positives = 222/584 (38%), Gaps = 47/584 (8%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVT---TTPDIATILGLAS--GSMHGPIRNWLPY 455
           FSD ER    +  S      +  +  RV     +     + G      + +    +    
Sbjct: 6   FSDNERA--MMESSDIPFAIYQFINKRVVTLILSKGFCDLFGYDDLSKAYYDMDNDMHKA 63

Query: 456 IHINDRDNFR-TILDSFVGYR--------RGRLQYEFRVRAADNQF-----------HWM 495
            H +D        L               + +   ++ +  A  +             W 
Sbjct: 64  THPDDTARIADAALRFANEEDEYNVIYRTKTKYSSDYSIIHAQGKHTVTKTGVRLAQVWY 123

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                  S+  G          D        E +L  ++ D+LTG+P    F + L T  
Sbjct: 124 TYEGSSSSDKKGADP-----LRDSMHIALYEERMLKASYYDHLTGLPGMTYFFE-LATYK 177

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                 +   P ++ +D    K  N   G A GD +L + +R + +     +  +RL  +
Sbjct: 178 KQVIISEGGTPALLYMDFSGMKYFNHKFGFAEGDKLLQAFSRILAKYF-GNENASRLGQD 236

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F +I     N+           + +     ++    T+   +G   +    I +S    
Sbjct: 237 HFAVI----TNAEDAETQ----LRGVFEDSAVMNNGKTLPIHVGIYKYWQDSIVASMACD 288

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE 733
            A+ A    K+   +    + +     +     I  +L  A++   + + Y PI+R ++ 
Sbjct: 289 RAKFACDTLKNHYSSEFSYYNMKMKDEEDKQQYIIANLDKAIKEKWITVYYQPIVRAVNG 348

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           ++   EAL +W  P  G +S ++F+ + E+  +I  ++L+M++ + + I +  D      
Sbjct: 349 KVCDEEALARWIDPVKGFMSPADFISVLEDHKLIYKLDLYMVDCVLQKIKTLSDAGLTI- 407

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +   IN++  D    ++   +     K   S S I +  +ES++  + E  +  + R +K
Sbjct: 408 MPQSINLSRSDFDCCDIVSEICRRTDKAGISRSMINIEITESIIGEDFEFMKNQIERFKK 467

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIET 911
            G ++ +DDFG+  S L  L  I FD +KF+   M    S+ K   IL  ++ MA ++E 
Sbjct: 468 EGFAVWMDDFGSGYSSLDLLQSIKFDLLKFDMRFMQQFDSSPKTRIILTELLRMANSLEL 527

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + + +  E  +K L   GC  +Q      P+    I++  ++
Sbjct: 528 DTVCEGVETEDQVKFLQEAGCAKLQGYFYQKPIPVEKIIEKYEK 571


>gi|327395951|dbj|BAK13373.1| protein YhjK [Pantoea ananatis AJ13355]
          Length = 658

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 191/440 (43%), Gaps = 14/440 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +        +T +PNR  FL  L   +           ++MVI I+  ++ N VL  
Sbjct: 224 HDEMSRLTTHFAVTDLPNRALFLALLDQFISSRRQ----PFSLMVIRIETLQEANGVLSD 279

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              D ++++L  +I   +    +LA+ + + F +++ S NN  +    A  +   +  P+
Sbjct: 280 EQRDTLMLTLVEKIRSTIDDHTVLAQTTTSDFVLLMKSANNPFRALRLARNLMIRLNQPV 339

Query: 646 NLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           NL + ++   ASIG A     +   + EML  A  AM   + +G + +  F  +     +
Sbjct: 340 NLHQLQLRPNASIGLALGEEGESMGAGEMLDRATSAMMSVRRQGKSQILFFDAALTERAQ 399

Query: 705 VMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +  + D+   + + +  L   P I +    + G EAL++            EF+  AE
Sbjct: 400 KRLTQEHDILQGLHDEQFALYLQPQIDMQTGRLAGAEALLRMRQADGSYGLPEEFIASAE 459

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E+ +I AI  +++E   R +  W+       + + INI++  L D  +   + AL+ +  
Sbjct: 460 EIGVISAIGRWVVEEACRILAGWQRHG--VTVPLSINISAVQLRDASIVSHLHALLERHR 517

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI---PFD 879
            +P  + L  +E+  +G+ E++  LL  L+K G+++ LDDFG   S L+YL      P +
Sbjct: 518 IAPGSLVLEITETAQIGDAEQAISLLRMLQKTGVAVALDDFGMGYSNLNYLHQFKSLPVN 577

Query: 880 TVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +K + S +    E    ++R +  +A  I+  +IA+ +        L   G    Q   
Sbjct: 578 KLKMDRSFVAALPEDD-TMVRIVAAIADIIDLDVIAEGVETCEQRDWLLARGITIGQGYL 636

Query: 940 VASPLGFNSI-LKLLKERFP 958
            +  L       + +    P
Sbjct: 637 YSEALPLAQFNAQWVPSPQP 656


>gi|319937223|ref|ZP_08011630.1| hypothetical protein HMPREF9488_02465 [Coprobacillus sp. 29_1]
 gi|319807589|gb|EFW04182.1| hypothetical protein HMPREF9488_02465 [Coprobacillus sp. 29_1]
          Length = 599

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 90/436 (20%), Positives = 188/436 (43%), Gaps = 12/436 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   + I    + D LTGI N  SF   +   ++           ++  DID +K  N +
Sbjct: 168 RHKQKQIQKVMYIDKLTGIYNLLSFEIEVQKQIENQKE---FSYVLICFDIDDFKFYNTI 224

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G A GD +L S+ + +   +    I AR + + F  ++   +      D    ++  + 
Sbjct: 225 YGYAFGDKMLQSIAKGLQLFINHNGICARSNSDCFYALVSYHDGI--AEDLRDYLKVVMK 282

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
             + L   +  +T S G    T +++ + ++L  A LA  +AK  G N +  +  +    
Sbjct: 283 EDLELDIID-DLTMSFGMYMVTQNEV-AQDILDYALLAHKNAKAIGKNCMIWYDQNLLDR 340

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +   +I + +  A+   +  +   P   +   +I+G EAL++W       +   +F+ +
Sbjct: 341 LNQDNLILKQMHRALAQHQFQMYLQPQFEVSTLKIIGAEALVRWKMDNGTFLYPDDFISL 400

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+   I  ++  +LE+  R I ++          I +N +   +   +  + +  ++ K
Sbjct: 401 FEKDGYIYELDFEILEQACRFIKTYNVA---SDFSISVNFSRVTIHHKQFYQRLHDVLEK 457

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I++  +ES        SR +L +LR+ G ++ +DDFG+  S L+ L  I  D 
Sbjct: 458 YKTPIGNIEIEITESAFHDLSNGSRAILLKLREEGFTIAMDDFGSGYSSLNLLDSISVDV 517

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K +   +   ++KR  I+  I+ +AK ++  +I + +  E DI  L ++ C   Q  ++
Sbjct: 518 LKIDKFFLVERSQKREMIIGLIVDIAKTLDMKVICEGVETEDDIDLLRKLNCPLGQGYYI 577

Query: 941 ASPLGFNSILKLLKER 956
           + P+      +     
Sbjct: 578 SKPILAQQFAEQFLNH 593


>gi|209755434|gb|ACI76029.1| hypothetical protein ECs4409 [Escherichia coli]
          Length = 651

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|320655850|gb|EFX23773.1| putative diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661632|gb|EFX29047.1| putative diguanylate cyclase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 649

 Score =  331 bits (848), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|237747873|ref|ZP_04578353.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379235|gb|EEO29326.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 762

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 185/436 (42%), Gaps = 19/436 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   AF D +TG  N  +    +   +    + D     +M  DID +K IN   
Sbjct: 339 RQRANLERIAFVDPITG-GN--TVNKFVVDAIAAMQSTDETNFFIMKFDIDNFKYINKFY 395

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD VL  +   +   L   ++LAR+S + +  +L               +++ ++ 
Sbjct: 396 GFEFGDRVLKHIYENVSGKLMPGEVLARISSDHYVALLRDAGEE--------RLKRMLS- 446

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             ++   E+ +  S G  + T      + ML  A  A    K   G +V  +     +++
Sbjct: 447 --SIEYEELILYFSAGVYAVTDKTEGINLMLDKACTAAQEIKGTLGRYVAYYTEEFDKAN 504

Query: 704 RV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +K  +   +EN E      P + +   E+VG EAL +W  P+   IS   F+ + 
Sbjct: 505 IRNEQLKRAVQQGIENGEFIPFIQPKVNIDTRELVGGEALARWRSPEGKMISPGVFIPMC 564

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  MI  I++ + E++ + + +  D      + I +N +   LL+ +  + +     + 
Sbjct: 565 EQTGMIVDIDMMIYEKVLQFLRAHLDAGIAC-VPISVNFSRMHLLNEDFLDQIVRKREEY 623

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               S I++  +ES +  N +   +   ++   G S+++DDFG+  S L+ L  +P D +
Sbjct: 624 NVPASLIEIELTESAIFDNIDNIYVFTEKMHSHGFSISMDDFGSGYSSLNMLKDVPIDVL 683

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +   +  S    +R  I  +I+ MA  +   I+ + +    +++ +   GC   Q  +
Sbjct: 684 KIDKGFLEESKDNSRRNIIFSTIVEMATQLNIRIVVEGVEFIENVELMRNCGCSIAQGFY 743

Query: 940 VASPLGFNSILKLLKE 955
            A P+       ++K+
Sbjct: 744 FARPMPSEDFSDVMKK 759


>gi|323971387|gb|EGB66626.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 651

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 193/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 NERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|213609893|ref|ZP_03369719.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 353

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 8/352 (2%)

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
           ARL G+ F +++    +   +   A  +   +  P  +   E+    +IG +        
Sbjct: 1   ARLGGDEFIVLVAH-TSQAALEAVASRILTRLRQPFRIGLIEVYTGCAIGISLAPRHGQD 59

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           S  +++ A+ AMY+AK  G      F   ++    D   +  +L  A+EN +L + Y P 
Sbjct: 60  SESLIRTADTAMYNAKEGGRGQFCVFSPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPK 119

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           I     E+  LEAL++W  P+ G I   EF+  AEE  +I  +  +++  + R I  WRD
Sbjct: 120 ITWR-GEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRD 178

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +     + + +N +++ L D  L   ++  +    +    I +  +ES ++ N   +  +
Sbjct: 179 KGIN--LRVAVNFSARQLADQTLFTALKQALYDLNFEYCPIDVELTESCLIENDTLALSV 236

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           + +  ++G  + LDDFGT  S LS L   P D VK + + +    ++    +++R+I+ +
Sbjct: 237 IQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAV 296

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           A+ +   +IA+ +    +   LT+ G +  Q    A P+   S  +  K   
Sbjct: 297 AQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYKRYQ 348


>gi|82779562|ref|YP_405911.1| putative phosphodiesterase [Shigella dysenteriae Sd197]
 gi|81243710|gb|ABB64420.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 651

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLQEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  +  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGII--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|309787508|ref|ZP_07682120.1| protein yhjK [Shigella dysenteriae 1617]
 gi|308925086|gb|EFP70581.1| protein yhjK [Shigella dysenteriae 1617]
          Length = 649

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLQEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  +  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGII--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|157163008|ref|YP_001460326.1| putative phosphodiesterase [Escherichia coli HS]
 gi|188493948|ref|ZP_03001218.1| diguanylate cylcase [Escherichia coli 53638]
 gi|238902618|ref|YP_002928414.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|300927976|ref|ZP_07143533.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|300950866|ref|ZP_07164748.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300955012|ref|ZP_07167422.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|301646047|ref|ZP_07245952.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|466667|gb|AAB18506.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|157068688|gb|ABV07943.1| putative diguanylate cyclase [Escherichia coli HS]
 gi|188489147|gb|EDU64250.1| diguanylate cylcase [Escherichia coli 53638]
 gi|238862235|gb|ACR64233.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|300318054|gb|EFJ67838.1| diguanylate cyclase domain protein [Escherichia coli MS 175-1]
 gi|300449842|gb|EFK13462.1| diguanylate cyclase domain protein [Escherichia coli MS 116-1]
 gi|300463983|gb|EFK27476.1| diguanylate cyclase domain protein [Escherichia coli MS 187-1]
 gi|301075718|gb|EFK90524.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|323934689|gb|EGB31079.1| AL domain-containing protein [Escherichia coli E1520]
 gi|323959460|gb|EGB55117.1| EAL domain-containing protein [Escherichia coli H489]
          Length = 651

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|311697041|gb|ADP99914.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 552

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 112/547 (20%), Positives = 217/547 (39%), Gaps = 15/547 (2%)

Query: 412 LGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
             S   +     V D   +       ++ G     + G    +L              + 
Sbjct: 13  DSSNSGIVISSCVEDFPIIYCNDAFCSLTGYERPEIMGKNCRFLQG--EETSQTVIGSIK 70

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           S +   +   +   +    D    W  + + P+ N  G +  Y+GI NDI +  ++   +
Sbjct: 71  SAIAQSKTH-RIVIKNYRKDGAAFWNDLYLTPIRNGKGSVTHYLGIQNDIKDLDRNNRNV 129

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
             +   D+LT +P   +    L  +  ++  ++    ++  I ++    +   +G +  D
Sbjct: 130 PFHFPYDDLTQLPT-PAMAVELIKMGAMNKPEEQASISLGTISVNGLANLRGFMGNSAAD 188

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN-SLKIADFAIAMRKSIAMPINLL 648
             ++ +  R+   L    ILAR     F +I+ S+ +           + +S   P+ + 
Sbjct: 189 TAILEIRDRLQMQLCNEAILARAGEGEFIVIVPSKEDGEDDFDKTLEGLCESTLRPVRID 248

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVM 706
            +   +T + GF S         E  +    A+  ++  G N V  F  S         +
Sbjct: 249 GQMFQLTFNGGFISRLP-YSLIDESTRFCSFALAQSQDEGRNRVVEFTYSDLRRAQADQL 307

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +   +  A++  E Y+ Y P + L  +++VG EAL +WDHP+ G +S   F+ + E    
Sbjct: 308 LAGHIPTALQGEEFYVAYQPQLNLETQDVVGFEALARWDHPEHGTVSPGRFIPLCENSGY 367

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I A+ L +LE+I  D+    ++     I + +N++   LLD E  +      +       
Sbjct: 368 INALTLNLLEQICNDLPDIWERYGD--IKVSMNLSPFSLLDREFIQAFIDTATAICDVKG 425

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++ L   E++ +   E +   L  LR+ G  + LDDFGT  S LSY+  +    VK +  
Sbjct: 426 KVSLEVVENLSIDGYESAAKNLAALREAGFDIILDDFGTGYSSLSYIRRLGASVVKIDRE 485

Query: 887 LMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            +    +     +AI+RS++ + K     +IA+ +        L   G    Q    + P
Sbjct: 486 FVMNLNQSNHDDLAIIRSVVSLGKQFGFDVIAEGVEYANQAAILLEEGVTIGQGYLFSKP 545

Query: 944 LGFNSIL 950
           L  +  L
Sbjct: 546 LKIDHFL 552


>gi|315618438|gb|EFU99025.1| protein yhjK [Escherichia coli 3431]
          Length = 633

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 202 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 257 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 317 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 376 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 436 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 554 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 612

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 613 GFLFARPLPIEIFEESYLEEK 633


>gi|238923296|ref|YP_002936811.1| sensory transduction protein kinase [Eubacterium rectale ATCC
           33656]
 gi|238874970|gb|ACR74677.1| sensory transduction protein kinase [Eubacterium rectale ATCC
           33656]
 gi|291525407|emb|CBK90994.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
 gi|291528488|emb|CBK94074.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 675

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 106/547 (19%), Positives = 219/547 (40%), Gaps = 33/547 (6%)

Query: 422 DIVRDRVT---TTPDIATILGLASGSMHGPIRNWLP----YIHIND--RDNFRTILDSFV 472
           D+  +++      P +  + G    S  G            +   D       T +++  
Sbjct: 146 DVDNNKMYPYRMNPSVRAMFGEVLESKPGYNEMMEQYVNAIVLEEDKLHMLLETSINNLR 205

Query: 473 GY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                +   Q+++R+   D Q  +   +   +S   G++ + I   +DI+ +K+    + 
Sbjct: 206 RQFLIKDTYQHDYRIVR-DGQVQYCRAKFVNVSGV-GELHKMIAGFSDISPEKQ--RELE 261

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A+ D +TG  N +SF  +L         D N+   ++ +DI  +K +N + G+A GD+
Sbjct: 262 RIAYVDAVTGGNNYESFKKKL--------RDRNVSGYLISMDIHSFKIVNSICGVAKGDE 313

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
            L  ++  I  ++ + DI   ++ +RF I    +  +  I        + I +  +L   
Sbjct: 314 ALRWISENIRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETINLQLIKVSESLKIP 373

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIK 708
           +I      G   W        E    A  A    K R     + +  +      +   ++
Sbjct: 374 KIQP--YFGVTKWEP-GKKVEEAYGEANFAKNRIKERKDVLYQIYSQADTERIVEEKQME 430

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++    + ++   + Y P       ++VG E L++W       I  S+F+ + E   MIK
Sbjct: 431 DNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFIPLFERNGMIK 490

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           A++ ++   +      W D+     + I IN++   L    + +    +  +       +
Sbjct: 491 ALDEYVFREVCTHQRRWLDEGKKI-VPISINLSRASLYFESVVKRYHDIARRIGIYTHLV 549

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES  + N +  + +  +    G  L +DDFG+  S L  L    FDT+K + SL+
Sbjct: 550 PIEITESAAVDN-DEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDTLKIDKSLI 608

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G +     ++ +I  +AK +   + A+ +  +  ++ L  + CD IQ  + + PL  
Sbjct: 609 DYIGDSNGERLLVHTI-ALAKELGICVTAEGVESQEQVEFLKNIDCDSIQGFYYSKPLPL 667

Query: 947 NSILKLL 953
                LL
Sbjct: 668 TEYEMLL 674


>gi|89110484|ref|AP_004264.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170083039|ref|YP_001732359.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|253771640|ref|YP_003034471.1| phosphodiesterase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163451|ref|YP_003046559.1| putative phosphodiesterase [Escherichia coli B str. REL606]
 gi|256025746|ref|ZP_05439611.1| putative phosphodiesterase [Escherichia sp. 4_1_40B]
 gi|297517515|ref|ZP_06935901.1| putative phosphodiesterase [Escherichia coli OP50]
 gi|301028213|ref|ZP_07191482.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|307140218|ref|ZP_07499574.1| putative phosphodiesterase [Escherichia coli H736]
 gi|85676515|dbj|BAE77765.1| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890874|gb|ACB04581.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|242379047|emb|CAQ33847.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253322684|gb|ACT27286.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975352|gb|ACT41023.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253979508|gb|ACT45178.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|260447456|gb|ACX37878.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Escherichia coli DH1]
 gi|299878699|gb|EFI86910.1| diguanylate cyclase domain protein [Escherichia coli MS 196-1]
 gi|315138105|dbj|BAJ45264.1| predicted diguanylate cyclase [Escherichia coli DH1]
          Length = 649

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|332750198|gb|EGJ80609.1| protein yhjK [Shigella flexneri 4343-70]
          Length = 644

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 213 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 267

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F II                +   +
Sbjct: 268 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAIIANGVQEPWHAITLGQQVLTIM 327

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 328 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 386

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 387 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 446

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N ++  L+   +   M  L++
Sbjct: 447 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNFSALQLMHPNMVADMLELLT 504

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 505 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 564

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 565 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 623

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 624 GFLFARPLPIEIFEESYLEEK 644


>gi|313900677|ref|ZP_07834170.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312954739|gb|EFR36414.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 730

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 186/442 (42%), Gaps = 23/442 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K   + +L N++ D+LTG+ NR  +L  L  +         +   ++ +DI+  K IN
Sbjct: 306 EKKDLNDRLLHNSYYDDLTGVYNRNRYLQDLNQL-----NGRQIPLGIVYMDINGLKDIN 360

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL      + ++      + R+ G+ F + +        +      ++++
Sbjct: 361 DHLGHTYGDKVLTEGASILKKVFNTGA-IYRIGGDEFVVFVQGMQEQEFLEQV-GILKQA 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSS 699
           I    N       +  S             S  + +A+  MY  K +    +  S R   
Sbjct: 419 IIGSANCKGAIGHIWTSTC--------QDISSRITDADEYMYQDKMQFYRKNPNSNRYRC 470

Query: 700 FRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                + + +   L  A+EN    +   P +    +E++G EALI++       I  +EF
Sbjct: 471 CNDTVLQLADRSVLMQALENQRFEVYLQPKVNFR-KELIGGEALIRYHDETGTLIMPNEF 529

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   EE   I+ ++ F  E++ R +  W  +       + +N +   L   +    ++ +
Sbjct: 530 IPSLEEARTIRYLDFFAFEQVCRLLSRWHAEGRRLT-PLSVNFSRYTLRMADFLGELERI 588

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                     +++   E+    + E   +++ R+++ G S+++DDFG + S ++      
Sbjct: 589 WGNYNVPKQYLEIEIIENDESLDNEFLIMIMERIKRQGYSISIDDFGARYSNMALFINAQ 648

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S+M       +   ++ S++ +  N++  +I + +  +     L ++ CD +
Sbjct: 649 LDTLKLDRSMMQDLQNNRRSQMLISSLVQICHNLQMQLIVEGVETKEQFDILKQLDCDGL 708

Query: 936 QDSHVASPLGFNSIL-KLLKER 956
           Q   +  P+  +    K +K++
Sbjct: 709 QGYLIDRPIPVSMFEQKYIKQK 730



 Score = 41.5 bits (96), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/178 (9%), Positives = 48/178 (26%), Gaps = 30/178 (16%)

Query: 428 VTTTPDIATILGLASGS---MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           +       T+ G +      +              D +  + I++     +  + +   R
Sbjct: 33  LWANDTFYTMCGYSEEEYHILFHDSATLFFQQTPKDFEKLKEIVEHAYRNKSQQYECFCR 92

Query: 485 VRAADNQFHWMIIRIR-PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           +         + +         +G  + Y+ +  D+ +  +  + +              
Sbjct: 93  LPVKGGSCLRIHMTGTFAEEQIDGIPVVYV-VYTDVEDMMRIRQNLEQE----------- 140

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
                +RL   L +     +    +M I        ND+      D +L  +   +  
Sbjct: 141 ----HERLNLALQMEMKTVSC-IRLMYIS-------NDMQSYM--DQLLKEIGEFMHA 184


>gi|331665150|ref|ZP_08366051.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA143]
 gi|331057660|gb|EGI29646.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA143]
          Length = 651

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 RERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRHAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|222148196|ref|YP_002549153.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221735184|gb|ACM36147.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 594

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 197/421 (46%), Gaps = 9/421 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PNR   L  L  I       + L   + +    ++ +++ V+G +  D V+ S+ + +
Sbjct: 168 GLPNRFQLLSDLADIGKHGGGKERLIGVLDLARTMQFDRLSRVMGPSHLDGVIRSVAQFL 227

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              +        +   +F +I   +  S  +     ++   +     +    +T+T S+G
Sbjct: 228 QRAVGDHTASYHIGAMQFALIPPEDVTSESLLPMLKSLLSDVG---EVANLRLTMTPSLG 284

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAVE-N 717
              +    +    +L++ + A+  A+    G    S            + +D  +A+   
Sbjct: 285 VTWFNPGAMEPENVLRSLQSAVQDARDSETGIAFFSDDHDLLHRRNFRLLQDFPVALASQ 344

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            +L+LV+ P + L   +    EAL++W+HP+ G+IS +EF+ + E   +++A++ +++++
Sbjct: 345 DQLHLVFQPRLSLKTGQAECAEALLRWNHPELGSISPAEFVPVIEASDLVRAMSAWVIDK 404

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               +   R Q     + + INI++ +L + E  E ++  ++K    P +I+   +E+ +
Sbjct: 405 ALSHLAVLRGQGID--MRLSINISALNLNEPEFLELLKEKLAKYDVLPGQIEFELTETAM 462

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897
           M   E+S  LL  L   GI L +DDFGT  S L+Y+  +P D VK + S +    +    
Sbjct: 463 MRETEKSLDLLHALSAHGIRLAIDDFGTGYSSLAYMQKLPADVVKIDRSFVADMAKGNRE 522

Query: 898 --ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++RS+I ++ ++   ++A+ +        L  MGCD IQ   ++ P+    + + L+ 
Sbjct: 523 RVLVRSMINLSHSLGYEVVAEGVETLEAADLLQAMGCDEIQGFWLSRPMAAEVLPEWLRH 582

Query: 956 R 956
           R
Sbjct: 583 R 583


>gi|218295102|ref|ZP_03495938.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thermus
           aquaticus Y51MC23]
 gi|218244305|gb|EED10830.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Thermus
           aquaticus Y51MC23]
          Length = 857

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 107/453 (23%), Positives = 191/453 (42%), Gaps = 62/453 (13%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +    +   AF D LTG+PNR  FL++L   L      +  R  V+ +D+D  K +ND
Sbjct: 437 RMELEGRLTYLAFHDPLTGLPNRLFFLEKLAQALK-----EEPRLAVLYLDLDGLKLVND 491

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           + G A GD+V+ ++  R+   ++  D++AR  G+ F I+L       +    A  + + +
Sbjct: 492 LEGHATGDEVIRTVAARLRAAVRPRDLVARQGGDEFLILLAGLRKPEEAVQVAERLLEVV 551

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            +P+ L  R   +T S+G A      +T  E+L  A+LA+Y AK  G + +  +      
Sbjct: 552 RLPLPLGGRVFRLTTSLGIALGEP-GLTPGELLARADLALYRAKDEGKDRLAFYEPGLQE 610

Query: 702 SDRVMIK--EDLCL--AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           + R  +   E L    A +  EL L Y PI+ L     V LEALI+W        S  EF
Sbjct: 611 ALRREMALVEALREALAGDQGELTLFYQPIVDLTTGAPVALEALIRWPKA-----SPGEF 665

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   ++  +  ++L R  R+            + + +N++ ++LL       +  +
Sbjct: 666 IPLAERHRLMPELGAWVLRRACREQAR-------HGLPVHVNVSPQELLHPGYPGLVAQV 718

Query: 818 ISKTLYSPSRIKLSFSESVVMGNP--ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           + +T   P  + L  +E+ ++ +     + L +  LR++G+ + LDDFG+  S L  L  
Sbjct: 719 LEETGCPPRALVLEVTETALIPDERGRDATLTVRILRELGVRVFLDDFGSGYSSLERLAA 778

Query: 876 IPFDTVKFNGSLMT--GSTEKRIA--------------------ILRSIIPMAKNIETTI 913
           +P D +K   +     G+     +                    +   I           
Sbjct: 779 LPVDGLKLGQAFTQALGNPPDPQSPAARLVAAVLALAQALGLAAVAEGI----------- 827

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +    E  +  L R+G    Q      P   
Sbjct: 828 --EG---EATLAYLRRLGFTLGQGFLFGRPAPL 855


>gi|254038708|ref|ZP_04872764.1| diguanylate cyclase/phosphodiesterase [Escherichia sp. 1_1_43]
 gi|226839214|gb|EEH71237.1| diguanylate cyclase/phosphodiesterase [Escherichia sp. 1_1_43]
          Length = 662

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|117625812|ref|YP_859135.1| putative phosphodiesterase [Escherichia coli APEC O1]
 gi|115514936|gb|ABJ03011.1| putative diguanylate cyclase [Escherichia coli APEC O1]
          Length = 651

 Score =  330 bits (847), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 196/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +L +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQQRLTEESDILNALENHQLAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|296135034|ref|YP_003642276.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795156|gb|ADG29946.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 801

 Score =  330 bits (847), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 216/495 (43%), Gaps = 28/495 (5%)

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRY------IGIANDITEQKKSLEGILCNAFQD 536
            ++  AD Q   +         + G  L          +  D     K+ + +   A +D
Sbjct: 149 IQLPMADGQQRALAWAAVLTVLAFGATLMMTVEGFSRALIKDNLRLTKAFKALRRFALRD 208

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LTG+ NR+ FLD L  ++       N   T+ ++D+D++K +ND LG  +GD +LV++ 
Sbjct: 209 ELTGLANRRIFLDHLNELM---QRRPNQTLTIGLMDLDRFKSVNDRLGHIIGDQLLVAVG 265

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +R+  +L+  D+LAR  G+ F ++L   +   +++  A  +   I  P  +    + +  
Sbjct: 266 QRLRGVLREGDLLARFGGDEFVVLLPGYSTEQQLSYIAKRLVNCIEAPFIIQGNSLQIGL 325

Query: 657 SIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCL 713
           S+G           +  +++ A++AMY AK  G      F      + +   +  + +  
Sbjct: 326 SLGLVVQQPDAPVDAQTLVRRADMAMYAAKKNGRQQYRIFDQQMEDAMQERHRKLQWVQS 385

Query: 714 AVENSELYLVYHPIIRLMDE----------EIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           A+ ++ L L Y PI+ L             +I G EAL++      G   ++ F  + ++
Sbjct: 386 ALRDNRLELQYQPILSLQAASTTKGAEPQVQIDGAEALLRLRDAA-GLHRAATFEAVLDD 444

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-L 822
             +  A+  F+L    R   +W        + I +NI+ +  LD +    +++++++   
Sbjct: 445 DTLAVAVGRFVLAAAMRQADAW--FGAGRALQISVNISPRHFLDPQFLSDLRSVLAQRPQ 502

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  + L  +E     +   +R ++ + R++G+ + LDDFGT  + L +L  +   +VK
Sbjct: 503 CPPGLLALELTEHGSELDGAMARFMVAQCRQLGVQVILDDFGTGSASLIHLQQLEITSVK 562

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S       +   ++I   ++ +A+ +   +I + +        L+ MGC   Q   +
Sbjct: 563 IDRSFTHDLFTSGAGLSISYGLLRIAELMGLEVIGEGVGSAQHALALSSMGCRRFQGYAI 622

Query: 941 ASPLGFNSILKLLKE 955
           + PL  +     L  
Sbjct: 623 SPPLSLSDFEVWLAN 637


>gi|313681833|ref|YP_004059571.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154693|gb|ADR33371.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 637

 Score =  330 bits (847), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 94/430 (21%), Positives = 182/430 (42%), Gaps = 32/430 (7%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT Q+K+ E +    + D LTG+PNR    +RL                + ++++D +K+
Sbjct: 232 ITVQEKTHE-LENQYYLDRLTGLPNRYRLQERLEQ---------GETVALAIVNVDDFKE 281

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND  GI++GD++L+ +   + EL        RL G+ F +I    +         + ++
Sbjct: 282 VNDFFGISIGDEMLIQIGIWLQEL---SGSCYRLGGDEFALIFNELSQKELEHRLNMLIK 338

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESF 695
                   + E  + +  +IG A          ++L  A++A++HAK        + E  
Sbjct: 339 FLDEKTFMVKEESLNIRVTIGVAIGN------DKVLTQADIALHHAKENKKQIAFYNEDE 392

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V       + +   +  A+ +  +   Y PI+ +   +IV  E L++    +   +   
Sbjct: 393 GVEEHYRTNLTMASHVRRALFDRRIICYYQPIVNIETGDIVKYETLVRMIDEEGNIVPPM 452

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ IA+   +   I L ++ +      S  ++         IN++  D+ +      + 
Sbjct: 453 QFLPIAKRTKLYPQITLEVVYQACTLFASRDEEF-------SINLSDSDIRNPHTVSEII 505

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I +T  + SRI     ES  + N +     + +++ +G  + +DDFGT  S    +  
Sbjct: 506 KTIIETG-TASRIVFEILESEGIENYDEVTRFIAQVKALGAKIAIDDFGTGYSNFENILK 564

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GSL+       +   I+ +II  AK I+   IA+ +  E     +  MG D
Sbjct: 565 LGVDYIKVDGSLIREIAANPRHRIIVETIIDFAKKIDAKTIAEFVSDETIYNTIEEMGVD 624

Query: 934 YIQDSHVASP 943
           Y Q      P
Sbjct: 625 YSQGYFTGKP 634


>gi|157149132|ref|YP_001456451.1| putative phosphodiesterase [Citrobacter koseri ATCC BAA-895]
 gi|157086337|gb|ABV16015.1| hypothetical protein CKO_04971 [Citrobacter koseri ATCC BAA-895]
          Length = 657

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 193/444 (43%), Gaps = 16/444 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            Q+ S+E     A +  ++ +PN+   +  L  ++    T       +M++  +  +   
Sbjct: 220 AQRHSIEQNDH-AMRFPVSELPNKAFLMGLLEQVVTRQQTT-----ALMIVTCETLRDTA 273

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            VL     + +L++L  ++  +L    +L ++SG  F II                +   
Sbjct: 274 GVLKETQREILLLTLVEKLKSVLAPRMVLTQVSGFDFAIIAHGVKEPWHAITLGQQVLTV 333

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           I   + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +  
Sbjct: 334 INERLPIESIQLRPSCSIGVAMFYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQM 392

Query: 701 RSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            + +  +  + D+  A++N +  +   P + +   +++  EAL++   P          +
Sbjct: 393 EAAQQRLTEESDILNALDNHQFAIWLQPQVEMSSGKVLSAEALLRVQQPDGSWELPEGLI 452

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E   ++  +  ++LE   R + +W+++  M P  + +N+++  L+   +   +  L+
Sbjct: 453 DRIESCGLMVTVGYWVLEESCRQLSAWQERGVMMP--LSVNLSALQLMHPNMVSDLLELL 510

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY--- 875
           S+    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   
Sbjct: 511 SRYRIQPDTLILEVTESRRIDDPHAAVAILRPLRSAGVRIALDDFGMGYAGLRQLQHMKS 570

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +P D +K +   + G  E   +++ +II MA+++   +IA+ +  E     L + G D  
Sbjct: 571 LPVDILKIDKMFVEGLPEDD-SMVTAIILMARSLNLKMIAEGVETEAQRDWLAQAGVDVA 629

Query: 936 QDSHVASPLGFNSI-LKLLKERFP 958
           Q    A  +  +    + LK   P
Sbjct: 630 QGFLFARAVPPDVFEERYLKNAQP 653


>gi|126665911|ref|ZP_01736892.1| sensory box/GGDEF family protein [Marinobacter sp. ELB17]
 gi|126629845|gb|EBA00462.1| sensory box/GGDEF family protein [Marinobacter sp. ELB17]
          Length = 536

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 100/456 (21%), Positives = 191/456 (41%), Gaps = 17/456 (3%)

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +   + P++   G  +  + I   +T+ +            D  TGIP R   + +    
Sbjct: 95  VAWELIPVNTKRGREVLALAIV--LTDDQPLENNPHQLPDMDPTTGIPTRHVVMAQAEEA 152

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
            +      N +  V+ + I+  +++N  LG   GD        RI   L   + + R++G
Sbjct: 153 FN---RHPNTQWAVLRLKIEGLRRVNQALGQDSGDHAFHQAVGRIVRSLAKGECVGRVAG 209

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           N F +++  +++   +     AM      P+ +   +  +  ++G A       T+ ++ 
Sbjct: 210 NEFILLIQHKSDDHTVERI-QAMDLLFDEPLKVGLLQFMLRINVGIARSPQDGSTAKDLE 268

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK-EDLCLAVENSELYLVYHPIIRLMDE 733
           + A +A+   +  G NH                   +   A+  SE  L Y P++     
Sbjct: 269 RRATIALERTRRSGLNHSFFSLALEDHVLAHSWVPAEAQRALRESEFQLYYQPVVDTRTG 328

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           E V +EALI+W HP  G I    F+ + EE+ +I  ++L++LER   + +S         
Sbjct: 329 ETVSMEALIRWQHPWRGMILPGHFIPVIEEMQLIVNLDLWVLERACHEAMSMGK------ 382

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + +NI +  +   +    + A ++++   PS + L  +E V   +PE     L    +
Sbjct: 383 -PVAVNITANTITAPDFLTRLDAALAQSKLPPSWLTLELTERVF-SSPELVLEPLKAAHE 440

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIET 911
            G+ +  DDFG   S LSYL   P D +K +GS +       +   ++  ++P+   +  
Sbjct: 441 RGVQIAADDFGVGYSSLSYLWQYPLDKLKLDGSFVRAAVLDPRAQELVTGLVPLIDTLGM 500

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           T+IA+ +  E D   L   G  + Q  + A P  F+
Sbjct: 501 TLIAECVETEEDRAWLHEAGVFFQQGYYFAHPAPFS 536


>gi|262166060|ref|ZP_06033797.1| GGDEF family protein [Vibrio mimicus VM223]
 gi|262025776|gb|EEY44444.1| GGDEF family protein [Vibrio mimicus VM223]
          Length = 641

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 196/450 (43%), Gaps = 26/450 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR      +   L  +         ++++D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTQLKNRNF----IVKTLKKNHLGKEEAIALVLLDLNRFKELNDTI 244

Query: 584 GIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+ +   +      F    AR+  + F ++L   N       F   +   + 
Sbjct: 245 GYAFGDQLLIKIASLLAIRCQPFGYECARIGADEFAVLLHPCNG--NAEFFIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASW--TSSKIT-----SSEMLKNAELAMYHAKH--RGGNHVE 693
             +   +    ++ ++G  ++    +        +S +L NA+LA++ AK    G     
Sbjct: 303 KLVKDNDPTKRLSIAMGVVTYQNPDAGQANSALRASSLLNNADLALHIAKKTPDGQVVYY 362

Query: 694 SFRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +  +    + + ++ E L         + LY+ Y PI+    E + G EAL++W H ++ 
Sbjct: 363 TREIECAYNKKRILAEQLQQLLSDPNQTSLYVCYQPILSCHSERL-GCEALLRWQHDEFD 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I     + IAEE  + K +  +++E++       W +  +     + IN++   L D  
Sbjct: 422 LIDPQYLIEIAEEYGLGKQLGTWIMEQVYLALKKEWHEYNHRLD--VSINLS-NALFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   ++ +        + I L  +E++ + +   S  ++ +L K+ +   LDDFGT  S 
Sbjct: 479 LPTLIKDIFDHQESFLNSIILELTETMTIEDFAHSLAIINQLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ +A  +  T++A+ +     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLAHQLGMTVVAEGVEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++G D  Q  + + P+         +  F
Sbjct: 599 KQLGVDEFQGYYFSYPITKEEFATFCEHHF 628


>gi|325263948|ref|ZP_08130681.1| putative sensory box/GGDEF family protein [Clostridium sp. D5]
 gi|324030986|gb|EGB92268.1| putative sensory box/GGDEF family protein [Clostridium sp. D5]
          Length = 764

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 182/439 (41%), Gaps = 11/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   A+ D +TG    Q F +    +L       N    ++  +I K+K +ND L
Sbjct: 322 NHKRKLEQIAYVDEVTGGNTIQRFYESAANLLSE---HPNKHYALVYTNIIKFKILNDEL 378

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    D +L  ++  +   +   +++ R   + F +++   +    ++ F     +    
Sbjct: 379 GRINCDSILRFISEFLCSKISEYEVIGRQFADNFCMLIEFNDEGDLLSRFGQWCTEVEET 438

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG----GNHVESFRVSS 699
            +   +         G     ++  +  +M+  A+LA+    H           +  V  
Sbjct: 439 AVEQKKPWKLPQMEFGIYVIENTTTSFPQMIDRAKLALRETPHTIDNKLRCAFYNDAVRR 498

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +++ +  A++++E  +   P  RL +E+I G EAL++W  P  G I   EF+ 
Sbjct: 499 QMLREKELEDRMEPALKDNEFMVFLQPKYRLPEEKIGGAEALVRWKSPNEGMIYPDEFIP 558

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+   I  ++LF+ E +   +  W D     PI + IN +     D         +  
Sbjct: 559 LFEKNGFIIRLDLFVFETVCSTLRRWIDNGID-PIRVSINCSRLHFKDKNFIFEYCRIAD 617

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                 S I++  +E ++  N      ++  +++ G   ++DDFG+  S L+ +  +P D
Sbjct: 618 NYNIDRSLIEIEVTEGMIFDNDTSFIDIIRNIKETGFKCSMDDFGSGYSSLNLIKNLPVD 677

Query: 880 TVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            +K +     G+     +  A++ +II MAK +    +A+ +     +  L R+ CD+IQ
Sbjct: 678 VLKLDKIFFHGNDIDMSRTEAVVTNIIRMAKALSLETVAEGVEERSQVDMLKRVNCDFIQ 737

Query: 937 DSHVASPLGFNSILKLLKE 955
               A P+   S  KLL +
Sbjct: 738 GYVFAKPMDIPSFEKLLHD 756


>gi|323182681|gb|EFZ68083.1| protein yhjK [Escherichia coli 1357]
          Length = 648

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 217 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 271

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 272 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 331

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 332 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 390

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 391 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 450

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 451 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 508

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 509 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 568

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 569 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 627

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 628 GFLFARPLPIEIFEESYLEEK 648


>gi|309703935|emb|CBJ03276.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|332345494|gb|AEE58828.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 649

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G      +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PGDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|332997539|gb|EGK17155.1| protein yhjK [Shigella flexneri K-218]
          Length = 633

 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 202 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 256

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 257 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 316

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 317 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 375

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 376 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 435

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N ++  L+   +   M  L++
Sbjct: 436 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNFSALQLMHPNMVADMLELLT 493

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 494 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 553

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 554 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 612

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 613 GFLFARPLPIEIFEESYLEEK 633


>gi|225571386|ref|ZP_03780382.1| hypothetical protein CLOHYLEM_07484 [Clostridium hylemonae DSM
           15053]
 gi|225159862|gb|EEG72481.1| hypothetical protein CLOHYLEM_07484 [Clostridium hylemonae DSM
           15053]
          Length = 611

 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 188/424 (44%), Gaps = 10/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNRQ   + L  +  +       + T++V+ + ++++IN+V G  +GD+ L ++
Sbjct: 188 DYLTNVPNRQ---ELLNMLSLMLNRHPETQFTLVVVSLREFRQINNVCGQRIGDEFLKAV 244

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +  ++     + R +G+ F ++   E++   I  +   +++ +     +   +  ++
Sbjct: 245 CEFLCSIV-EGVNVYRFTGDEFAVLFTEESD-DVIEGYITEVQRRMKQNWCVESYQFNLS 302

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           A IG     +   T   M+   E A+  AK    G        +      R  IK+ L  
Sbjct: 303 AVIGIIRHQAKDDTLEHMINAIEYAVNQAKSGKCGQVCYCDEEMLRKLRRRQQIKQILKE 362

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + +    + Y PI  +        E+L++ +    G +  SEF+ IAEE  MI  I   
Sbjct: 363 KLRDESFEMYYQPIYSVHSGTFRYAESLMRMNDTPIGPVYPSEFIPIAEETGMIIDITYV 422

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+++   I   + +       + +N  +       L   +  +I K    PS +K+ F+
Sbjct: 423 VLDKVCAFINRLKSEHIPIDA-VHVNFPAVQFSQPGLAGRVMDIIEKNGTPPSAVKIEFT 481

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGST 892
           ES +   P+        ++K GI + LDDFGT  S  + +  IPF T+K + SL+     
Sbjct: 482 ESTLAEKPQAVTDFAAEMKKFGIEMGLDDFGTGYSNFAMVINIPFGTIKLDKSLVGAMIG 541

Query: 893 EKRIAI-LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            K  A+ +++I+   K +   ++A+ +  E   + +  +  D IQ  + A P+  +    
Sbjct: 542 SKNSALGVKNIVRTFKELGMKVVAEGVETEEQKRMVEEIHVDQIQGFYYAKPMSEDEAEA 601

Query: 952 LLKE 955
            L++
Sbjct: 602 FLRK 605


>gi|289676671|ref|ZP_06497561.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 323

 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 156/314 (49%), Gaps = 5/314 (1%)

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRS 702
           P  +   E+ +   IG   +     ++ E+L  A +A    A   G   +          
Sbjct: 1   PQRIDNHELELECCIGITVYPEHGDSAQELLNRAVIARKDAAFLPGRLQIYQDGRDLAHQ 60

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ +  DL  A +N EL L Y P + +    +   EAL++W HP++G++S +EF+++AE
Sbjct: 61  RQITLIRDLRKAAQNGELMLHYQPKLDIRQGYVRQAEALLRWAHPQFGSVSPAEFIVLAE 120

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  +++E   R +  WR +  +  + + +NI++ DLL ++L   +  L+ +  
Sbjct: 121 RTGSIYLLTNWVIEEAMRQLAEWRKRGLV--LQVSVNISADDLLGDDLVGYVVKLLKQYA 178

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++    +ES VM  PE++ ++L RLR  GISL++DDFGT  S L++L  +P   +K
Sbjct: 179 VPAEQLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELK 238

Query: 883 FNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S +    E  +   I+RS I M+ N+   ++A+ +  +  +  L R  CD  Q   +
Sbjct: 239 IDQSFVRNLDETSEDAVIVRSTIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLI 298

Query: 941 ASPLGFNSILKLLK 954
           + PL  ++    + 
Sbjct: 299 SRPLTASAFEAWIA 312


>gi|323160575|gb|EFZ46516.1| protein yhjK [Escherichia coli E128010]
          Length = 644

 Score =  330 bits (846), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 193/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 213 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 267

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 268 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 327

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 328 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 386

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 387 VAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 446

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 447 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 504

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 505 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 564

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +   ++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 565 PIDVLKIDKMFVEGL-PEDSCMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 623

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 624 GFLFARPLPIEIFEESYLEEK 644


>gi|86145180|ref|ZP_01063511.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Vibrio sp. MED222]
 gi|85836757|gb|EAQ54877.1| Signaling protein with a sensor domain, CHASE, GGDEF and EAL
           domains [Vibrio sp. MED222]
          Length = 810

 Score =  330 bits (846), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 181/449 (40%), Gaps = 23/449 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR+SF+  L   +  S    +    ++  DI  ++KIND+ G  V
Sbjct: 346 ELKFEAEFDQLTKLANRRSFIRHLDVRIKSSR---SPHCYLVCWDIIDFRKINDLYGAKV 402

Query: 588 GDDVLVSLTRRIGELL----------KFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           GD+VLVSL + + E L               +ARL GN+F  IL        I +    +
Sbjct: 403 GDNVLVSLAKTLRETLQNQQSSFGFSCSDYSIARLGGNQFIAILE-MGEHQSINEEIENI 461

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA-ELAMYHAKHRGGNHVESFR 696
             ++     L      +  SI             E+     +  + +AK           
Sbjct: 462 NNTLTGTTFLDYYGFRL--SIATGVLPVDTPKFEEIWHRCIDEMLINAKDHSDGDSRIVY 519

Query: 697 VSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        I++ L     +    L + PI      +I G E LI+          
Sbjct: 520 GEELLHSLERHDVIEKRLLECCVSDNFELRFMPIFNAKTLQIDGAECLIRCPALFDIKAG 579

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+  AE+  +I  ++++++    ++      + +     + INI++ +L +    + 
Sbjct: 580 PDEFIPAAEKSNLISKLDMWVISTAIKNYKEL-SEIHQYKGTLSINISAMELYNRNFADN 638

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ +    P  I +  +E+  + + + +   +  +R +G+ ++LDDFGT  +  + L
Sbjct: 639 IRKVLERYQVPPGNIIIEITETSYVKSSKLTVQTIESIRSLGLKVSLDDFGTGYTAFNQL 698

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P D +K + S +      +    ++ S++ +  + +T ++ + +        L +  
Sbjct: 699 LHYPVDELKIDKSFIDNIVHDKADRKMVESMVNLGHSCDTFVVGEGVESLEQCHHLRKAN 758

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960
           CD IQ    + PL +   ++ +++  P  
Sbjct: 759 CDLIQGYFFSQPLTYIEFIEFVRDHNPQT 787


>gi|58038546|ref|YP_190510.1| sensory box/GGDEF family protein [Gluconobacter oxydans 621H]
 gi|58000960|gb|AAW59854.1| Sensory box/GGDEF family protein [Gluconobacter oxydans 621H]
          Length = 566

 Score =  330 bits (846), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 95/409 (23%), Positives = 194/409 (47%), Gaps = 10/409 (2%)

Query: 541 IPNRQSFLDRLTTILDLS-ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           +P+R+  L  L   ++ +         +++ +++D    IND  G    D +L  + RR+
Sbjct: 152 LPDREESLRVLHQFIERTGKLSRRAVFSLIHLNLDHLSLINDRYGWDTADLILAEMIRRL 211

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +L     L+ + G  F ++      ++       A+ +  + P++L    I  + S G
Sbjct: 212 RAVLPEGCFLSSIGGGHFMVLTPPGTTAVTTRSLVNAILQISSTPVSLDMGAIPFSISAG 271

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
           ++ +      +++++  A  A+  A   GG H          +  +   +++DL  AVE+
Sbjct: 272 WSVYPQDAGDANQLILAARAALTEANRTGGGHERRANAELTNTYAITSNLEKDLLKAVED 331

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L+L + PI+    ++IVG EAL++W  P  G ++ + F+  AEE+ MI+A++ + L  
Sbjct: 332 DALFLKWMPIVDTASQKIVGHEALLRWTRPGHGEVAPNLFIRYAEEVGMIEALDSWSLRN 391

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                + W       P+ + +N++   L++  L   +  ++++T   P R+++  SE   
Sbjct: 392 ACLAALRWP-----TPLRVCVNVSPVWLVNERLAPLVDTVLTETGLPPGRLQVELSECRP 446

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897
            G  + +   L R+R +G+ L +DDFG   S L  L   P D +K + + +    E   A
Sbjct: 447 FGPSDIAFRELSRVRALGVRLAIDDFGAGYSSLERLRIYPLDQIKLDRAFVQYLGEDMRA 506

Query: 898 --ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             I+ +I+ +A+++  T  AK +  E  +  L   GC+ +Q   + +P+
Sbjct: 507 DEIMYAILSLARSLNITCCAKGVETEHQMALLDANGCEEVQGYLLGAPV 555


>gi|149194719|ref|ZP_01871814.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
 gi|149135142|gb|EDM23623.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
          Length = 610

 Score =  330 bits (846), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 187/428 (43%), Gaps = 21/428 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                +  D LT   NR         I++    ++  +  +++ DID +KKIND  G  +
Sbjct: 202 KEKFQSLIDPLTNTYNR--------KIINRIENENIKKTALLIFDIDNFKKINDTYGHNI 253

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL +LT+ I   ++  D L R  G  F +IL +      +             PIN+
Sbjct: 254 GDIVLKNLTQTIKSQIRSNDYLIRYGGEEFLLILNNIEQKDALKKIEKIFNTIRNTPINI 313

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             +++ +T S G       +    E +K A+  +Y AK  G N    +  +S +   +  
Sbjct: 314 GNKKLFITISGGVHLEPEKEKNIFEAIKKADQELYKAKRTGKNKYCIYSENSEKIFAI-- 371

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             ++   +E++ + +   PI+ +   +I   EAL +  +      S + F+   +     
Sbjct: 372 -NEITDFIESNSILVYLQPILNIKTNKIEKFEALARIKYKD-EIFSPNTFLENIKNTNTY 429

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           +     +L+++ + I  +        + I +N  +KD  D +          K     S 
Sbjct: 430 RDFTSIILDKVFKTISKY-------KVEISVNFFAKDFFDEKFITLFDEKEKKYKDLLSF 482

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +   E+  + N ++ +  L  L++ GI +++DDFG+  S LSYL YI  D +K + S+
Sbjct: 483 LSIEILENEQIENIQKLQNQLKILKEKGIKISIDDFGSDYSNLSYLTYITPDYIKIDSSI 542

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    S      I+++I+ +AK      IA+ +  +   K L  +  DYIQ  +++ PL 
Sbjct: 543 VKEVRSNINAQKIIKTIVILAKEFNAKTIAEFVEDKDSFKILKSLNVDYIQGYYISPPLP 602

Query: 946 FNSILKLL 953
              I K++
Sbjct: 603 IEEIEKII 610


>gi|319781884|ref|YP_004141360.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167772|gb|ADV11310.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 668

 Score =  329 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 199/457 (43%), Gaps = 24/457 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+ K+L      +  D LTG+ NR++  ++L    +           ++ ID+D +KK 
Sbjct: 223 TERGKALLR---LSRTDPLTGLENRRAIDEKLRDYWNDWQKVGTSFGAIL-IDVDFFKKF 278

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND  G   GD  L+ +   + +++K     + R  G  F ++   E    +I D A A+ 
Sbjct: 279 NDCYGHQEGDRCLIHVANALSDMIKQYNGSIGRYGGEEFIVLARMEK-KEQILDIAEAIC 337

Query: 639 K-----SIAMPINLLEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
                 ++   +      I VT S+G A   T +     +++  A+ A+Y AK  G N  
Sbjct: 338 STVENLALTHELRRDGVSI-VTVSVGAAFTRTQTGAKLEKIIHEADRALYLAKAGGRNCA 396

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  +      +   I   L +A+  + + LVY PI  +  + +  +EAL++       
Sbjct: 397 RLFDPTDPQSSDESENIAALLKIAIGQNLVSLVYQPIQDVKSDRVEAVEALMRLKMLDGT 456

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           ++  S F+ +AE    I  +  + +  +  ++      A+     + +N++   L     
Sbjct: 457 SVPPSLFIPVAERTGAILELGRWAIRTVCAEL-----LADDHVRVVSVNVSPIQLKTPGF 511

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  ++ +T  + +R+    +E + M         +  L+ +GI + LDDFGT  + L
Sbjct: 512 ATSVATILGETGVAGNRLAFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFAGL 571

Query: 871 SYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           S+L  I FDTVK + S +   S+    A+L+ II + +N    I+ + +  +  +  +  
Sbjct: 572 SWLRLIDFDTVKIDRSFLHDCSSPSGKAMLQDIITLVRNRGHKILVEGVETDEQMALMRE 631

Query: 930 MGCDYIQDSHVASPLGFNSI---LKLLKERFPLVKNT 963
            G D IQ  HV  P    S      + K  F ++K+ 
Sbjct: 632 FGIDKIQGFHVGRPAPAVSFQAKRAMRKRPFAVLKSA 668


>gi|83643177|ref|YP_431612.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631220|gb|ABC27187.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 432

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 183/420 (43%), Gaps = 8/420 (1%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           P R  FL  L     +    +     V+V D+ +  + N++ G AVGD +  ++  R+ +
Sbjct: 10  PQRSEFLQELRRAATVLP--EGRVLGVIVFDLRRLLRTNEIYGDAVGDHLFQAVGERLHK 67

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           L +    +  +   RF  I +   ++  +   A  M K +  P+++    ++V  + G A
Sbjct: 68  LREGKGPVYCVGDGRFA-ITVQAVSAAILQLAAQQMLKVLEQPLDIDSHRLSVHLTCGGA 126

Query: 662 SWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           S+ +       +L  AE A+  AK+ R      S    S R     I+ ++  A+E + L
Sbjct: 127 SYPAHASKPETLLTCAEQALSGAKYLRVRYMDYSDMPESHRLGDWNIEREVIQAIEQNSL 186

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L + P I +  + + G EAL++W  P  G +S   F+   E   +   +  ++L    R
Sbjct: 187 ELYFQPKIHIPSQSVAGAEALLRWRSPTRGYVSPELFIPYIENAGLSYELQKWVLNTALR 246

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               W D+   P   + +NI+ + + + EL   +   +      P  + L  +E+V++  
Sbjct: 247 LGRDWLDRY--PDFALAVNISPEFVSNPELSNLVLGALGIWDTEPENLVLELTETVLLWE 304

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
             RS   L  LR  G+S+ +DDFGT  S L Y   +P + +K + + +           +
Sbjct: 305 RNRSIDNLEALRVTGVSVAIDDFGTGYSSLEYFKDLPANQLKIDKAFVFRMLDHPADGDM 364

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
           +  +I +A      ++A+ +     +  L  MGC+  Q  +   P+  ++  + ++   P
Sbjct: 365 VGLMIRLAHIFGMQVVAEGVEDAASLHRLAAMGCEQAQGYYFCKPIPRDAFTEWMQAFHP 424


>gi|119896981|ref|YP_932194.1| hypothetical protein azo0690 [Azoarcus sp. BH72]
 gi|119669394|emb|CAL93307.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 627

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/711 (14%), Positives = 212/711 (29%), Gaps = 102/711 (14%)

Query: 5   NSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFT 64
            S+R    +    ++ + L + +     + I +  +   +DL     + V+ G    +  
Sbjct: 2   TSVRQWAARLIWAMLAWALAIAAGGARADDIALDPAHGEVDLARRVSVLVDDGRSLSLEA 61

Query: 65  AA-------DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHF 117
           A               R        R    W  F++A  +      L+ V    L    F
Sbjct: 62  AKAAFARGEGAPAEPARGGELNFGYRAADIWLHFSVAAAAPDDARWLLEVGFPSLDRVEF 121

Query: 118 FSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRIT-INPGAVVTFIMEISTPN--LPQIY 174
            +   G      V         R     S VF +  + PG  +   +++++       + 
Sbjct: 122 HAFGPGGEAHQ-VAGDRIAFHARPWQHRSPVFPLPQLAPGERLEVYVKVASEGSLTVPLR 180

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL-GYIS 233
           LW                 +  G+ + LA++  + ++  R  + +        +  G+  
Sbjct: 181 LWTQTALGARDQRAYSEDALYFGMLTALALYNLLLWVALREQVFLRYVGFVASLAVGFAG 240

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGY-ITFSGIAC 292
                   L         +              +F   +L       ++   +  +    
Sbjct: 241 QTGAGGEFLWPAWPTWSHLSFPVGMALTGFFGTLFTRSFLDTRNTVPRLDRCLAVAAWVF 300

Query: 293 IAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI 352
           +A +           A +  +             +   ++G+  A       + +  W +
Sbjct: 301 LAAVAAHLVVGYRFAAMLTSLAGIGFAPIAALAGVRGAVRGHPGA------RVFLLAWAL 354

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
                        ++   +V  +     L    +  H +  G   + +       S A+ 
Sbjct: 355 -------------LLVGVVVMAMRNFGWLPTVWLTTHAMQIGSALEMLL-----LSFAMA 396

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
                        DR+                               +R+  R  L   +
Sbjct: 397 -------------DRINVMRR--------------------------EREAARQALVDTL 417

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                RL+     R A        ++       + ++                   +   
Sbjct: 418 QEAGQRLEQRVAERTA-------ELQAANRRLRDNELA------------------LQQL 452

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           AF D LTG+ NR    +R+   +  +    + +  V+++D+D +K +ND  G AVGD VL
Sbjct: 453 AFHDPLTGLYNRVMLEERIRHAMLRADR-QDTQLAVLLLDLDGFKAVNDGYGHAVGDAVL 511

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            +   R+   ++  D +ARL G+ F ++L   +   +    A  +  ++A P+       
Sbjct: 512 AAAATRMKAQVRASDTVARLGGDEFVVVLEPFSGEDQAVRVAAKLVAALAEPVVESGVAH 571

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + ASIG A + +      +++  A+ AMY  K  G               
Sbjct: 572 QIGASIGIALYPADGRDVDQLILAADRAMYRVKAAGKGGWRRNSPEQAAHP 622


>gi|120555025|ref|YP_959376.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
 gi|120324874|gb|ABM19189.1| diguanylate cyclase [Marinobacter aquaeolei VT8]
          Length = 630

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/692 (15%), Positives = 215/692 (31%), Gaps = 93/692 (13%)

Query: 9   SHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68
           +H  + F++  L    +     + E +      + L+L+     +  +G    +     +
Sbjct: 5   THMPRLFVLFSLLCCLLAPSLSSAESVEWGQFSKRLELSRFVDYWKEEGAR-SIEDVRGL 63

Query: 69  DGISRRIEVSA---SSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
              +     S            W    L NT  S+    + + +  L     +    GS 
Sbjct: 64  PAQAWTRNGSDSVSLGYGDDIYWFRVELTNTLKSEASNFLEIGYPVLDHVEVYREVDGSM 123

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWEPNFYKD 183
           +   +   +    DR  +  + +  + + P +  T  + +   +     + LW+ + +  
Sbjct: 124 QEPLLLGDKRPFYDRPIHHRNFIVPLPLPPESTTTVYLRVDTTSSMQVPMTLWDQDAFYS 183

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVV-LGYISIDFGFLSKL 242
              + +L+ GI  G+  ++ ++    +M       +        + L   S+       L
Sbjct: 184 AEQARSLFEGIYYGIVLVMILYNLFVFMAVGERSFLYYVGYIAAMPLFLASLHGVTFQYL 243

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLH-WNRWHAKVGYITFSGIACIAILFCMSF 301
               +             +      F   ++    + H  +   T++ I    +L     
Sbjct: 244 WPEATWWNDQSIIVFLNLVVLFGGAFSIRFISVTRQNHPWLNRWTWAMIMTAGMLALAGL 303

Query: 302 YYPMVTASIARITLASIVLYYTYFI-IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
             P     +  I +A +       + +   +K    A     A                 
Sbjct: 304 LIPYQWLILPSILVAFVGCSTMLMLSVVRWIKKDPAARYYTVA----------------- 346

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                     L GG+VL   L  FT++   L T   +Q              GS   V  
Sbjct: 347 ------WVFMLFGGIVLA--LSKFTMLPRNLLTENATQV-------------GSALGVIL 385

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
             I                                ++   + +F          R+ RL 
Sbjct: 386 LSIA---------------------------LADRLNREKKKSFAAQQKLLREERKARLA 418

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
            E  +R        +      +        R      D+   +   E +L  +  D LTG
Sbjct: 419 QEKSLR--------IQQEANALLEE-----RVQERTRDL---EILNEQLLELSATDPLTG 462

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR  F  +  + +  +   +    +++++DID +K  ND  G  VGDD L  +   I 
Sbjct: 463 LKNRGHFDKKFQSDVVHAYRFEET-LSLLIVDIDHFKGFNDTYGHLVGDDCLKMVADCIK 521

Query: 601 ELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
           + + +  D+ AR  G  F ++L     +       +       M   + ++ + +T SIG
Sbjct: 522 QHVTRPQDLAARYGGEEFVVLLPDTPEAGACRVAELIREDIQKMAFRVSDQVLHLTVSIG 581

Query: 660 FASW-TSSKITSSEMLKNAELAMYHAKHRGGN 690
             S   S    +  +   A+ A+Y AK  G N
Sbjct: 582 VCSCAPSQADATKALFACADGALYRAKAEGRN 613


>gi|153835144|ref|ZP_01987811.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148868378|gb|EDL67495.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 606

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/450 (23%), Positives = 201/450 (44%), Gaps = 20/450 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           I+E+  K L  +      DNLTG+ NR    D L T+   +        ++  +DID +K
Sbjct: 162 ISERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFSLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTADAIQQSLTSPNNAFRVAGDEFAFITYD----EDPVAVCQEI 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I    +     I+ T SIG A      + S +++ NA LA+   K      ++ +  
Sbjct: 274 LDKIEAGYSDKSNRISFTVSIGIARAPVHMLNSDDLILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRVM--IKEDLCL-----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E L         EN ELY+V  PI+ +  +     E L +W+   +G
Sbjct: 334 HLSALYHRQTQLIEALREQLRLSIDENEELYVVVQPIVDITSDRWDYFEILARWNSNVYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           NIS  EF+  AE+  +I  +   ++E   R   +   Q     + + IN ++ +L+D+  
Sbjct: 394 NISPVEFIEAAEQSGLIIELGERIVELACRAKQALERQLGY-NVKLSINCSAHELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ K  +  +   +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YMNFLTRILEKYDHQATDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +      +    ++  I  +A+ +E  +IA+ +  +  +++L
Sbjct: 513 LNYIHNYPIDSIKIDATFVRNMLANKTSEQVVLLIAQLAQLLEVDLIAEGVEDDRALQKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             MGC +IQ    + P   N ++ ++ E+ 
Sbjct: 573 IEMGCHHIQGYFYSRPHSVNELVGIINEKQ 602


>gi|300853760|ref|YP_003778744.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300433875|gb|ADK13642.1| predicted sensory transduction protein with GGDEF and EAL domains
           [Clostridium ljungdahlii DSM 13528]
          Length = 437

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 176/412 (42%), Gaps = 10/412 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F + +   +      +     +  +++      N +L    G+ +L ++  ++   +   
Sbjct: 19  FDEFMHKYVK-----EKDSFAICFLNMTNLGLCNYILEYKYGNVLLHNVINKVRYCINQK 73

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             + +  G+   +I+ +             +         L  ++I +   +G A +   
Sbjct: 74  AYIYKFGGDVLLLIIPNIKCRDNAVKIIKRIISINNDIFLLAGKKIRIEIKLGVALYPYD 133

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724
            +   ++ K A +A+     + G+  E F  + + ++ +   I  D+  A  N E  L Y
Sbjct: 134 NVELHDVFKYASIALNCVNKKCGSTYEFFNANMYENNAMEEKIGTDIQDAFINHEFILYY 193

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P + +   ++ G+EALI+W+HP++G ++ S F+   E    IK +   +      +   
Sbjct: 194 QPQVNVDSGKVYGVEALIRWNHPEFGILTPSYFIDGIERSGEIKKVGRIVFYMACLEAKR 253

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
                    + + +N++ +   D+     ++ ++  T   P  I    +E   + + E+ 
Sbjct: 254 LHK-LGYSDLIMSVNLSIRQFEDDFFITFIKNILEITQVKPEYINFEITERTAINSTEKI 312

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902
              L  ++ IGI + +DDFGT+ S L+YL  +P D +K + S + G    EK+  I++++
Sbjct: 313 TSALRNIKDIGIKIFVDDFGTQYSFLNYLYTVPIDGIKIDRSFINGIDRCEKKFIIVKNL 372

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I +A ++   ++A+ +     ++ L R  C  +Q      PL  N +   +K
Sbjct: 373 IKLANDLNLEVVAEGMETVEQLRYLERANCRNVQGFLFGKPLNPNELTSFMK 424


>gi|78776581|ref|YP_392896.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497121|gb|ABB43661.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 656

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 178/416 (42%), Gaps = 26/416 (6%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           FQD LT +PNR   ++ +   +D           + +++ID +K IND+ G A+GD++L+
Sbjct: 251 FQDRLTKLPNRLKLIEDIELSMDKKHRH------LALVNIDAFKDINDLYGYAIGDEILI 304

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
            +++RI         + +L  + F I +  + +          + ++I     ++ E+ I
Sbjct: 305 QVSQRIRNFCTDLGSIYKLPNDEFAIFVTDKFDEDNFHKTIKTLLETINETKFSIDEQSI 364

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSFRSDRVMIKE 709
            ++ S G +           +L  A  A+  AK        + +S       +  +    
Sbjct: 365 FISFSCGIS------SNKDPLLIKANTALQAAKSTAKSVVIYKDSLNAKEQITKNMDALL 418

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+  +++   + PI     ++I   EAL +        I+   F+ IA +  +   
Sbjct: 419 ILKEAIAKNQITPYFQPIYNTRSKKIEKYEALARIVREDGSVIAPFAFLDIAIKSKLYPE 478

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   M+ +          +         IN++  D+ + E+ + + + + +    P R+ 
Sbjct: 479 ITKAMILKSFEFFKDKEYEF-------SINLSILDIQNQEVLKFILSKLREFP-EPQRVV 530

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
               ES  + N +  +  +  ++K G  + +DDFG+  S  S +  +  D +K + SL+ 
Sbjct: 531 FEILESHKIENYQEMKSFIKEVKKYGSKIAIDDFGSGYSNFSQVFELNVDCLKIDASLVK 590

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              + E    I+++I+  A N+    IA+ +     ++ L +MG D+IQ  ++  P
Sbjct: 591 YITTDESSRVIIKTIVNFASNLGLKTIAEFVEDRESLEILEKMGIDFIQGYYIGKP 646


>gi|209755428|gb|ACI76026.1| hypothetical protein ECs4409 [Escherichia coli]
          Length = 651

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTS-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|126739485|ref|ZP_01755178.1| putative sensory box/GGDEF family protein [Roseobacter sp.
           SK209-2-6]
 gi|126719585|gb|EBA16294.1| putative sensory box/GGDEF family protein [Roseobacter sp.
           SK209-2-6]
          Length = 773

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 115/451 (25%), Positives = 201/451 (44%), Gaps = 17/451 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++        A  D LTG+ NR++    L   L       +     M ID+D +K+IN
Sbjct: 327 ELEQLNRDAEYRADHDPLTGLANRRALQRELERRLGDPKNASSAITA-MHIDLDLFKEIN 385

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A GD VL  + R + +L    D++AR+ G+ + II   +  S      A A+   
Sbjct: 386 DTLGHAAGDHVLQHVARVLTDLTVQSDLVARVGGDEYLIIRTGDALSEDAERLADAIIAE 445

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           ++ PI   E      ASIG A            ++L +A++A+Y AK  G      F   
Sbjct: 446 LSKPILFQEELCQFGASIGVAKAKIDVEHLDCEKLLTDADIALYRAKELGRGRYAFFSDA 505

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                ++   + +DL  A+ +  +  VY P I +   E++GLE   +W HP+ G +S + 
Sbjct: 506 LREDVTNTKALSDDLSSAIRDGSIVPVYQPQIDVATNEVIGLEVFARWIHPERGTLSPAT 565

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE L ++  I+  +LER   D  SW  +    P  I +N++ + L +N     +  
Sbjct: 566 FLPIAERLGVVPKIDTLILERAVSDARSWVQRGFTVP-KISVNLSIQTLKENGFLNRLGE 624

Query: 817 LISKTLYSPSRIKLSFSE---SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +      P  + +   E   S +  +  +    L +L ++G+ + + DFG   S    +
Sbjct: 625 -LRPY---PCNLSIEVVEDFCSALCRD--QLAYFLDQLDELGVGVEIGDFGAGYSSFQSI 678

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +    +K +  L     ++E    I+R+I  +A  +E  ++A+ I  +     L  +G
Sbjct: 679 YEVRPKQLKISKVLTDNVTTSETHAEIIRAIQHIATKLEIDVLAEGIEDQTASAFLENLG 738

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           C   Q    + PLGF+ ++  +     L +N
Sbjct: 739 CTGQQGYLFSKPLGFDDLIIWMNGPDALQRN 769


>gi|15896271|ref|NP_349620.1| sensory transduction protein [Clostridium acetobutylicum ATCC 824]
 gi|15026078|gb|AAK80960.1|AE007799_3 Sensory transduction protein with GGDEF and EAL domains
           [Clostridium acetobutylicum ATCC 824]
 gi|325510426|gb|ADZ22062.1| Sensory transduction protein with GGDEF and EAL domains
           [Clostridium acetobutylicum EA 2018]
          Length = 416

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 180/398 (45%), Gaps = 8/398 (2%)

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            + +  + +IDI K++  N   G   GD +L  ++  +   L+      R+ G++F ++ 
Sbjct: 20  SDNKFALYLIDISKFRVYNYKYGYENGDRLLREISINLKNNLEDSCQATRIRGDKFVVLF 79

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                  +    A ++ +              V  ++G + +  +      +L  AE+A+
Sbjct: 80  P-FKERREFKIMAQSIVEFFHSYAIKYHTSFRVDINMGVSLYPYNGDNVESVLSCAEVAL 138

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
             AK+   +  E F             I  D+  A++N E  L Y P +   +++I GLE
Sbjct: 139 SIAKNSEKSCYEVFDYKSCEKLFKDERILHDISHALQNKEFELYYQPQVDTNNKDIYGLE 198

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +  + F+ + E   MI +I  F+++    ++  + D      + + IN
Sbjct: 199 ALLRWRHPQKGILGPNYFIAMVERNGMINSIGKFVIKEALAELRRFNDM-GYEKLSMSIN 257

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           IA   L +      ++  +     +   I     E   +   E+   +L +LR++GI + 
Sbjct: 258 IAESQLCEESFVSFVKETVENEGVNSRNIIFEIIERTALS--EKVLCVLNQLRELGIRIY 315

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAIL-RSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+YL  IP D +K + S +    +  R  I+ R+II +A++++  IIA+ 
Sbjct: 316 IDDFGTMYSSLNYLYNIPLDGIKLDKSFVDKLYSSNRNLIVTRNIINLARDLDIDIIAEG 375

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +     +K L  M C  IQ    + P+  NS++   + 
Sbjct: 376 VEYREQLKCLNSMNCSKIQGFIFSKPVDSNSVMDFFRN 413


>gi|320645345|gb|EFX14361.1| putative diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
 gi|320650656|gb|EFX19122.1| putative diguanylate cyclase [Escherichia coli O157:H- str. H 2687]
          Length = 649

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTS-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|239623602|ref|ZP_04666633.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521633|gb|EEQ61499.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 765

 Score =  329 bits (845), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 178/437 (40%), Gaps = 16/437 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   AF D LTG  N+ +F  R    L  S         VM  D+  +K IN+  G
Sbjct: 322 HRMQLERLAFVDPLTGGANQAAFGLRYRE-LAGSMKPGGYTIAVM--DVRHFKMINERFG 378

Query: 585 IAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           I  G+ VL  L   +   ++  D   +AR   + F + L       +I D    M + I 
Sbjct: 379 IHEGNQVLAYLYHVMERHMRAEDGEFVARSESDCFFLCLKG-GGHQEIRDRMDDMVQDIN 437

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              N      T +   G        +  + +   A LA                     +
Sbjct: 438 SFCNPDLPGYTFSFRQGACVVEEPGLEIAILQDRARLASQS--RNPDLEPGCVFYDDSLT 495

Query: 703 DRVMIKEDL----CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             + ++E+L      ++EN +  +   P + L    + G EAL++W HPK G I  S+F+
Sbjct: 496 VELKMEEELNGLFQGSIENHDFQVYLQPKVGLESRALEGAEALVRWIHPKRGVIYPSDFI 555

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E    I  +++++   + R I  W  +     I + +N++ +   D +  +    + 
Sbjct: 556 PLFERNGKICKLDIYVFTEVCRIISRWEKEGKEI-IPVSVNLSRQHFTDEDFLDRFADIA 614

Query: 819 SKTLYSPSRIKLSFSESVVMG--NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +       I+   +ES+       +R R  + R+ ++G + +LDDFG+  S L  L   
Sbjct: 615 GQYHIPAGMIEFELTESIFFDSHQIQRVRDAIQRMHELGFACSLDDFGSGFSSLGLLKEF 674

Query: 877 PFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D++K + S     +  K   ++  ++ +AK ++   +A+ I     ++ L  +GC+ +
Sbjct: 675 DVDSIKMDRSFFLNMSGPKAREVIACLVDLAKRLKVKTVAEGIEDWDTVEYLKSIGCNMV 734

Query: 936 QDSHVASPLGFNSILKL 952
           Q    + PL  ++  +L
Sbjct: 735 QGYVFSKPLPADAFERL 751


>gi|114707083|ref|ZP_01439982.1| hypothetical protein FP2506_03489 [Fulvimarina pelagi HTCC2506]
 gi|114537633|gb|EAU40758.1| hypothetical protein FP2506_03489 [Fulvimarina pelagi HTCC2506]
          Length = 615

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/440 (23%), Positives = 197/440 (44%), Gaps = 16/440 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +L  +  D LTG+ NR++  ++L         +      V++ID+D +K  N
Sbjct: 174 EVERRGNDLLALSRTDPLTGLYNRRATDEKLEGFWQDWLQNGQ-SFAVLLIDVDYFKAFN 232

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD  LV+L      + +     A R  G  F I L+   +   I   A ++R 
Sbjct: 233 DHYGHQDGDQCLVTLAEVFRGIAESNSCFAGRYGGEEF-IFLMGAEDPGAIVRLAESIRT 291

Query: 640 SIAMPINLLEREI----TVTASIGFASWTSSKITSSEML-KNAELAMYHAKHRGGNHVES 694
           ++     L E+      +VT SIG A   +S+  + ++L   A+ A+Y AK +G N +E 
Sbjct: 292 AVLQLGLLHEKRPDGRKSVTVSIGSAMSHTSQGDAMDILVLAADQALYRAKDKGRNRIEI 351

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F  S+   +R    I   L  A+++  + +VY PI+ +       +E+L++ + P  G I
Sbjct: 352 FDPSNPPMERQDEDIAALLDRAIDSGLVSMVYQPIVDIETGRTFAMESLMRLERPNGGAI 411

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           + + F+ IAE    I ++  + L    RD+      A      + +N++   L       
Sbjct: 412 TPNVFIPIAESTGHIVSLGRWALLSACRDV-----LAENLAQVVSVNVSVIQLKTPGFSL 466

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
              ALI +    P R+ L  +ES  + +   +   +  L+++G+ + LDDFG   + LS+
Sbjct: 467 YTAALIGRLKIDPKRLALEITESHAIDDHPEALNCIAELKRLGVKIWLDDFGAGYAGLSW 526

Query: 873 LGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           L  + FD VK + S +    T +  ++L  ++ + ++    I+ + +     ++ L    
Sbjct: 527 LQKVEFDVVKIDNSFLGERMTARDKSMLSDLVRLIRHRGHEIVVEGVETPRQLEMLRSFD 586

Query: 932 CDYIQDSHVASPLGFNSILK 951
             Y Q  ++  P     +  
Sbjct: 587 VHYAQGFYLGRPQTLVQLQA 606


>gi|239624127|ref|ZP_04667158.1| RNase II stability modulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520513|gb|EEQ60379.1| RNase II stability modulator [Clostridiales bacterium 1_7_47FAA]
          Length = 642

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 187/443 (42%), Gaps = 14/443 (3%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G+   IT+    +        +D+LTGI NR SF   +   +       + +  V+++ +
Sbjct: 204 GMFAAITDMIIYISFQSSWNERDSLTGIGNRNSFFQEIALRIA-----GHQQFQVILVAL 258

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
             +  IN       GD+ L  +  R+ + +       R +   F I+L  + +     D 
Sbjct: 259 KNFSSINQKFSYKQGDEFLYVIADRL-DHILPQSRAFRFANVEFAILLPYD-SEENAYDN 316

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHV 692
              +R+    P N  +    + A      +T  +   +++++  E  +  A     G   
Sbjct: 317 IGKIRERFNHPWNQGKVSCNINALFTDFVYTGQEWNPAQVIEFLEYGIESAGESPEGLKR 376

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +      R  + E +  ++E+    + Y P+  L D      EAL++        +
Sbjct: 377 FDSSMLHHLMRRKQLIEIMQYSIEHKRFKVWYQPVYSLEDNCFSSAEALLRLKDYDGNPV 436

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+ IAEE  MI  +   +LE +   +             I IN++ +   D  L E
Sbjct: 437 SPGEFIPIAEEKGMIDNLFWIVLEEVCLLLQR----TPGQIKSISINLSMQQFEDRTLLE 492

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            M+  + K   +P R+K+  +E V++ + +  ++++  L K GI   LDDFGT  S +S 
Sbjct: 493 RMKQCLDKYHLTPERLKIEITERVLLQDMDYMKMMMEELTKSGICFYLDDFGTGYSNISC 552

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +PF+ +K + SL+ G    R A  +++S++   +++   I+A+ +  +   + L   
Sbjct: 553 VLSLPFEYIKLDKSLLKGIPGDRKAELLVKSMVKTFRSMGLKIVAEGVEEKEQAEMLKEF 612

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
           G   IQ  +   P+     L+ +
Sbjct: 613 GVSSIQGYYYGKPMPEEEFLEYI 635


>gi|167756144|ref|ZP_02428271.1| hypothetical protein CLORAM_01664 [Clostridium ramosum DSM 1402]
 gi|167704136|gb|EDS18715.1| hypothetical protein CLORAM_01664 [Clostridium ramosum DSM 1402]
          Length = 644

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 189/427 (44%), Gaps = 14/427 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             F D LT + NRQ F   +  ++     D+N     +VI +  +K IND  G  +GD +
Sbjct: 221 QMFTDTLTNLLNRQEFNKMIDILI-----DNNKPFIAVVISLKNFKFINDKFGQEIGDQI 275

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +   +  LL     + R  G+ F +I  ++ N   + +    +   +  P  +   +
Sbjct: 276 LLEVCHYLRYLLPKQA-MYRYGGDEFALIFYNKKN---VINALEKIETRMKNPWQISNID 331

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKE 709
             ++   G  ++     +  E++   E A+   K    +++     +  +  R    I +
Sbjct: 332 FIISYVAGGIAYPKVAHSKEEIINGLEYAVSLGKKDNAHNINFCVTAMIKQIRRKYQILD 391

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L + +EN+   + + PI  L        EAL++      G IS  EF+ IAEE  +I  
Sbjct: 392 LLRICLENNSFEVYFQPIYDLKTHSYCKAEALLRLPDNPLGFISPEEFIPIAEENGLIAP 451

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   +L++    I     +       + IN +    + ++L   +  +I K       IK
Sbjct: 452 ITYQVLDKTCLFIKKVIAEKKDFTG-VSINFSVLQFMQDDLENKVLKVIEKHQLPYELIK 510

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES+++ N +     +  +   GI   LDDFGT  S ++Y+  IPF  VK + SL+ 
Sbjct: 511 IEITESMLVTNFDAITNFMTNMINRGIQFLLDDFGTGYSNITYVLTIPFQVVKVDKSLIW 570

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +   EK   +++ +I     I   I+A+ I  +  ++ + + GCD +Q  + + P+ F+
Sbjct: 571 QAMKDEKAAILIKKMIEAFNQIGLHILAEGIETKEQMEFMKKCGCDLLQGYYFSRPVSFD 630

Query: 948 SILKLLK 954
             L ++K
Sbjct: 631 EALNVIK 637


>gi|269959928|ref|ZP_06174305.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835227|gb|EEZ89309.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 606

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/450 (23%), Positives = 198/450 (44%), Gaps = 20/450 (4%)

Query: 519 ITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           I+E+  K L  +      DNLTG+ NR    D L T+   +        ++  +DID +K
Sbjct: 162 ISERSDKLLNQLSYEVSHDNLTGLLNRSCLADTLETLTQQATR----PFSLAYLDIDNFK 217

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND+ G  +GD ++      I + L  P+   R++G+ F  I                +
Sbjct: 218 SINDINGNYIGDQIIKFTANAIQQSLTSPNNAFRVAGDEFAFI----TYEEDPVAVCQEI 273

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              I          I+ T SIG A      + S +++ NA LA+   K      ++ +  
Sbjct: 274 LDKIEAGYTDKSNRISFTVSIGIARAPVHMLNSDDLILNASLALKDCKKHRDTRIQHYDT 333

Query: 698 SSFRSDRVM--IKEDLCL-----AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                      + E L         EN ELY+V  PI+ +  +     E L +W+   +G
Sbjct: 334 HLSALYHRQTQLIEALREQLRLSIDENEELYVVVQPIVDITSDRWDYFEILARWNSSVYG 393

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE- 809
           ++S  EF+  AE+  +I  +   ++E   R       Q     + + IN ++ +L+D+  
Sbjct: 394 SVSPVEFIEAAEQSGLIIELGERIVELACRAKQDLERQLGY-KVKLSINCSAHELVDSNR 452

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++ K  +  +   +  +E+V++    R +++L  LR +G  + LDDFGT  S 
Sbjct: 453 YMNFLTRILEKYDHQATDFVIELTETVLLSQSGREQMVLNSLRYLGFKVALDDFGTGYSS 512

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L+Y+   P D++K + + +           ++  I  +A+ +E  +IA+ +  +  +++L
Sbjct: 513 LNYIHNYPIDSIKIDATFVRNMLANTTSEQVVLLIAQLAQLLEVDLIAEGVEDDRALQKL 572

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             MGC +IQ    + P   N ++ ++ E+ 
Sbjct: 573 IEMGCHHIQGYFYSRPHNVNELISIINEKQ 602


>gi|324014178|gb|EGB83397.1| diguanylate cyclase domain protein [Escherichia coli MS 60-1]
          Length = 651

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   I
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++L    R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLGESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|320666655|gb|EFX33638.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61]
          Length = 649

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|304412236|ref|ZP_07393845.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS183]
 gi|307306980|ref|ZP_07586720.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica BA175]
 gi|304349502|gb|EFM13911.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS183]
 gi|306910558|gb|EFN40988.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica BA175]
          Length = 882

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 103/423 (24%), Positives = 194/423 (45%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL+  +         +  ++ ID+D++K+
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S NN     D +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + I+ P  L   E    ASIG       K  TS  ML+NA+ AMY AK  G      F  
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITISGKHKVDTSESMLRNADTAMYQAKANGKGCYVIFDD 617

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +        V ++ +   A+ ++E+ L Y P+I     ++  LE+ + W HP+ G +   
Sbjct: 618 NAQHQVMQDVELENEFRHALHHAEIELSYLPVIDFNTGQVHALESRLFWQHPQRGLLQQE 677

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +   ++ + +  I R  I    Q +   I + + ++S+ L    +   ++
Sbjct: 678 QLSALAEQSHLTVELDKYTISIIDRTYIELLKQ-HDESIELHVMLSSQHLKHKHVLRSLK 736

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T  + S + L F+E  ++   E        L+K+G+ L +  +G+  S L+ L +
Sbjct: 737 NTLKQTQLNLSHLWLFFNEKALVQETENHINGFELLQKLGVKLGISHYGSGYSALNSLLF 796

Query: 876 IPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + +L      ++   ++ +    A  +E       I      +  + +G   
Sbjct: 797 LPIKGLKLDANLTKQIHAEQQLKLMSAYQKTASTLELQTFVDGIDSPEQKRIFSELGYQL 856

Query: 935 IQD 937
            Q 
Sbjct: 857 GQG 859


>gi|313682053|ref|YP_004059791.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313154913|gb|ADR33591.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 734

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 197/439 (44%), Gaps = 26/439 (5%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D    K+    +      D+LT +PNR + +  + T         N    +M+++ID
Sbjct: 315 IERDTQITKELNLKLEHQLHTDHLTSLPNRNALIRDIRT---------NRFYALMLLNID 365

Query: 575 KYKKINDVLGIAVGDDVLVSLTR-RIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            +K+IND  G A+GD+ L++L +  +  +  FP  L ++  + + I L    ++ ++   
Sbjct: 366 NFKEINDFYGHAIGDETLLALAQSVLEAIADFPMQLYKMPSDEYAIALREPMSTFELEAA 425

Query: 634 AIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GG 689
            + +   + +   +L    I VT ++G     S K    ++L NA++A+  AK R     
Sbjct: 426 RLKIVNHLQSQYYDLQGASIYVTLTMGMDIARSRKSNVIDLLANADMALKSAKKRRLSYQ 485

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + E+ ++     + ++  + L  A+E  +  L Y PI   +  EIV  EALI+      
Sbjct: 486 LYDETMQIRQEYQNNILWSKKLKEAIEQKQFCLYYQPIFDALSREIVEYEALIRMIDNNG 545

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             +S   F+  A +  +   +  F+++ + + I +        P    +N++  D+ D +
Sbjct: 546 EIVSPGYFLPAARQSRLYPHLTRFVIDEVFKMIET-------TPQTYSMNLSVDDIFDTK 598

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             E +   + ++ Y P RI     ES  + N       +  ++K G  + +DDFGT  S 
Sbjct: 599 --EFIIQKLGESSY-PERIIFELLESEGIENYPEVSTFISDVKKFGCRIAIDDFGTGYSN 655

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            +++  +  D +K +GSL+           IL +I   +K++    +A+ ++ E    + 
Sbjct: 656 FAHIIKLDVDLLKIDGSLIRNIDTDSNAQTILTAITEFSKHLGLKTVAEFVHSEAVYHKC 715

Query: 928 TRMGCDYIQDSHVASPLGF 946
             +G DY+Q  ++  P   
Sbjct: 716 KELGIDYLQGYYLGEPKPL 734


>gi|296452427|ref|ZP_06894128.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296877776|ref|ZP_06901802.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296258757|gb|EFH05651.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296431227|gb|EFH17048.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 515

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 196/415 (47%), Gaps = 10/415 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           FL  +   +    +++     +   D+ + K IND+ G  +GD+VL ++   +       
Sbjct: 85  FLKHVQNYI---ISNEKENCVMACFDLCRLKLINDIYGYELGDEVLNNILSNLKYYFGKE 141

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE--REITVTASIGFASWT 664
            I  +L    F +I+  E+   KI      ++  I +   +     +I + ASIG   + 
Sbjct: 142 AIYVKLKSAVFVLIIKLEDREQKIPYLVNLIKNKIVILNQIDNFKMDINIEASIGIYKFN 201

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYL 722
           +++I   + + NA++A   +K         F   +       + I+ DL LA++N E  +
Sbjct: 202 NNEIDIKKAIDNADMARIKSKRLKHIEYVEFDNAMEEEIQSIMKIERDLFLAIKNKEFVI 261

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P +      I+G EALI+W HP  G I+ ++F+ IAE+  +I  I  ++++ +   I
Sbjct: 262 HYQPKVDSSTGNIIGSEALIRWLHPSLGMIAPNKFIPIAEKNGLINNIGRWLIQEVFGTI 321

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W  +     + + IN++  +L  N+L +  + + +        I+L  +E+  + + +
Sbjct: 322 NKWILEGINV-LPVSINLSRVELYKNDLVDFFKLMFNTYNIPKELIELEITETTALRDVK 380

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L  ++ +G++++LDDFG   S    L  IP D +K + SL+       K   +++
Sbjct: 381 FISERLYEIKSLGMNISLDDFGVGNSNFINLKGIPLDVIKIDRSLILDIVTNTKTKFMVK 440

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ ++ ++  T+I + +     +K L+ +GC++IQ      PL   +  +LL +
Sbjct: 441 AIVNLSHDLNVTVICEGVEDMNQVKVLSELGCNFIQGYVFFKPLDEINYKRLLTD 495


>gi|13472106|ref|NP_103673.1| hypothetical protein mll2297 [Mesorhizobium loti MAFF303099]
 gi|14022851|dbj|BAB49459.1| mll2297 [Mesorhizobium loti MAFF303099]
          Length = 697

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 205/457 (44%), Gaps = 22/457 (4%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           + K++ E    +L  +  D LTG+ NR++  ++L           + +   ++ID+D +K
Sbjct: 249 QHKEATERGKALLRLSRTDPLTGLENRRAIDEKLRDYWSDWQKLGS-KFAAILIDVDFFK 307

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIA 636
           K ND  G   GD  L+ +   + +L+K     + R  G  F I+L   +   ++A+ A A
Sbjct: 308 KFNDCYGHQEGDRCLIHVANALSDLIKNYNGSIGRYGGEEF-IVLARMDKKDQVAELAEA 366

Query: 637 MRK-----SIAMPINLLEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGN 690
           + +     +I   +      I VTAS+G A   T +     +++  A+ A+Y AK  G N
Sbjct: 367 ICRTVENLAITHELRRDGISI-VTASVGAAFTRTQAGAKLEKIIHEADRALYLAKAGGRN 425

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  +      +   +   L +A+    + LVY PI  ++   +  +EAL++     
Sbjct: 426 CARLFDPTDPQSSDESENLAALLKIAIGQGLVSLVYQPIQDVVSGRVEAVEALMRLKMLD 485

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +  S F+ +AE    I  +  + +  +  ++      A+     + +N++   L   
Sbjct: 486 GTLVPPSLFIPVAERTGAILELGRWAIRTVCAEL-----LADDHVPLVSVNVSPIQLKTP 540

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                +  ++ +T  + +R+    +E + M         +  L+ +GI + LDDFGT  +
Sbjct: 541 GFAASVATILGETGVTGNRLAFEITEGLEMEMHSDILRCISDLKLLGIKIWLDDFGTGFA 600

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LS+L  I FDTVK + S +    T K +A+L+ II + +N    I+ + +  +  I  +
Sbjct: 601 GLSWLRLIDFDTVKIDRSFLHDCGTPKGMAMLQDIIALVRNRGHKILVEGVETDEQIALM 660

Query: 928 TRMGCDYIQDSHVASPLGFNS-ILKLLKERFPLVKNT 963
              G D IQ   V  P+   S + K   ++ P +K+ 
Sbjct: 661 REFGIDKIQGFRVGRPVPAASYLEKRGIQKRPYLKSA 697


>gi|331018436|gb|EGH98492.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 607

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG     D
Sbjct: 168 FIDQPTGLFNRSRLQEDIHEALASSVDYQ-----LVVVDMITSAFLNDIVKALGYDFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  RI  LL     L ++   RFG +L  +            + +    P+     
Sbjct: 223 LVTAIKERIESLLPRTCSLYKVGPTRFGFLLPGDRPPEH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPNEEQDWMRMVISAADDARDRDLGWAIYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLETGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFH--FRIAINVTPEDLTGPAFTDRMVRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLGWL 584


>gi|229088111|ref|NP_709307.3| putative phosphodiesterase [Shigella flexneri 2a str. 301]
          Length = 651

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+   +EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNTLENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|56383917|gb|AAN45014.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 649

 Score =  329 bits (844), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+   +EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNTLENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|213966701|ref|ZP_03394852.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
 gi|213928551|gb|EEB62095.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato T1]
          Length = 607

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG     D
Sbjct: 168 FIDQPTGLFNRSRLQEDIHEALASSVDYQ-----LVVVDMITSAFLNDIVKALGYDFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  RI  LL     L ++   RFG +L  +            + +    P+     
Sbjct: 223 LVTAIKERIESLLPRTCSLYKVGPTRFGFLLPGDRPPEH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPNEEQDWMRMVISAADDARDRDLGWAIYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLETGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFH--FRIAINVPPEDLTGPAFTDRMVRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLGWL 584


>gi|28871677|ref|NP_794296.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854929|gb|AAO57991.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 607

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG     D
Sbjct: 168 FIDQPTGLFNRSRLQEDIHEALASSVDYQ-----LVVVDMITSAFLNDIVKALGYDFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  RI  LL     L ++   RFG +L  +            + +    P+     
Sbjct: 223 LVTAIKERIESLLPRTCSLYKVGPTRFGFLLPGDRPPEH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPNEEQDWMRMVISAADDARDRDLGWAIYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLETGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFH--FRIAINVTPEDLTGPAFTDRMVRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLGWL 584


>gi|301383214|ref|ZP_07231632.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato Max13]
 gi|302059057|ref|ZP_07250598.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato K40]
 gi|302133725|ref|ZP_07259715.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato NCPPB 1108]
          Length = 607

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG     D
Sbjct: 168 FIDQPTGLFNRSRLQEDIHEALASSVDYQ-----LVVVDMITSAFLNDIVKALGYDFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  RI  LL     L ++   RFG +L  +            + +    P+     
Sbjct: 223 LVTAIKERIESLLPRTCSLYKVGPTRFGFLLPGDRPPEH---LFRTILEDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPNEEQDWMRMVISAADDARDRDLGWAIYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLETGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFH--FRIAINVTPEDLTGPAFTDRMVRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLGWL 584


>gi|317491027|ref|ZP_07949463.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920574|gb|EFV41897.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 860

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 170/436 (38%), Gaps = 12/436 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +     +      D  T +  R+    +L    +     D     + ++ +  +  I 
Sbjct: 420 ELEGMFLKLEEQLNIDEETKLMTRRGLQGKLRECYEE--RSDFTIGLLAIVGLSNFNTIT 477

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             LG   G D ++     +  +L     LAR +  RF I                   + 
Sbjct: 478 SSLGRRYGKDFVLRFIHDLQTILPVGTWLARDADERFIICYPGIKTQDFCVSEQHKFERF 537

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEM---LKNAELAMYHAKHRGGNHVESFRV 697
                   E +       G   +    ++   +   + +A +A   A+ +G  +   F  
Sbjct: 538 FRG--MDTEHDTDGQVYAGNTGFVHDVMSPENLNESIMDAHIAFKFARSKGNGYSMLFHS 595

Query: 698 SSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                +   I     L  A+  +E +LV+ PI+ L    I G E LI+W + + G +   
Sbjct: 596 DIRAEEIRNINMLRHLKSALSLNEFFLVFQPIVSLTTRNITGAECLIRWRNAELGMVGPD 655

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-PIFILINIASKDLLDNELCEGM 814
            F+ +AE+   I  +  +++E     I         P    + INI+   L+  +    +
Sbjct: 656 LFIPLAEDTGFIVPLGAWVIESACAQISEKLSGGEWPSDFKVHINISLIQLMQRDFIHTL 715

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + +++   +P  I +  +E+ +M   E     +  +R +G+S+++DDFG+  S LSYL 
Sbjct: 716 FSTLARHNVAPHNISIEITETSMMKETEILTTTIRTIRGMGVSISIDDFGSGFSSLSYLH 775

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            + FDT+K +   ++      +  +I+ ++I +A      ++A+ +       +L  MGC
Sbjct: 776 KLEFDTLKIDKDFVSDVLEDSRNESIVSAVIRLADGFNVPLVAEGVETAEVADKLQAMGC 835

Query: 933 DYIQDSHVASPLGFNS 948
              Q  + A P+  + 
Sbjct: 836 QKAQGYYFARPMPLSE 851


>gi|310828198|ref|YP_003960555.1| putative signaling protein [Eubacterium limosum KIST612]
 gi|308739932|gb|ADO37592.1| putative signaling protein [Eubacterium limosum KIST612]
          Length = 912

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 221/550 (40%), Gaps = 37/550 (6%)

Query: 419 WDWDIVRDRVTTTPDIATILGLAS--GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
           ++ + V + V  T     +L L+    +  G  +     I          IL+     + 
Sbjct: 377 FEINKVTEEVYCTDSFFKMLNLSHVKETADGLNKENFESIM-----LGLKILNQDFDPQT 431

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
                E  +   + Q  W+   I+ + +     +  +G+  D+T +      I      D
Sbjct: 432 NVTVIE--IMDQNKQSKWIE--IKLVEDD----VNILGVIRDVTIETLERLKIEHERDYD 483

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LT + NR++F   L                V+++D+D  K IND  G   GD+ + S  
Sbjct: 484 ILTNLLNRRAFYAALNERFGTPERLKTA--AVLMLDLDNLKYINDTYGHDFGDEYIRSTA 541

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK-SIAMPIN-LLEREITV 654
             + +      I AR+SG+ F  ++   ++  +I      +R+  +      L + ++ +
Sbjct: 542 NILKQFASPNAIFARISGDEFYALIYGYDSKDQIRPIISEIRQRLLNTAFPLLNDPDLKI 601

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLC 712
            AS G A +     +   +LK A+ AMY  K+        F   S+  +  +++   +L 
Sbjct: 602 RASGGVAWYPDDSCSYEALLKYADFAMYQIKNSVKGEFCEFDSKSYSENAYLLENKEELN 661

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             ++ + +   + PI+ + D +I+G EAL++         +  E + +A+    +  I  
Sbjct: 662 KFIDGNLVDYHFQPIVDIRDGQIIGYEALMRSRLSTLK--TPMEILALAKSQSKLHQIEW 719

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
                  + +   ++        + IN  S  LL ++  E ++ L         ++ +  
Sbjct: 720 LTWFNSLKALKENQEAFGGA--RMFINSISNQLLSSDEMEELEQL---YQPILGQVVVEL 774

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E     N   +R     +R  G  L LDDFGT  +  + L ++  D VK + S++    
Sbjct: 775 TE-EERTNESFTRKKQRYIRNWGAGLALDDFGTGYNSDANLLFMTPDYVKIDMSIVQNID 833

Query: 893 EK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP------L 944
           E   R  +L++++   K  +  IIA+ +    ++  L R G DY+Q  ++  P      L
Sbjct: 834 EDINRQKLLQNLVTYFKERKIKIIAEGVETVNELHALIRFGVDYVQGFYLGRPDIQPQKL 893

Query: 945 GFNSILKLLK 954
               + ++L+
Sbjct: 894 TDEQVAEILR 903


>gi|167718914|ref|ZP_02402150.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei DM98]
          Length = 343

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 85/336 (25%), Positives = 165/336 (49%), Gaps = 11/336 (3%)

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTS------SKITSSEMLKNAELAMYHA 684
              A  ++ ++  P     + + ++AS+G A +             S +L+ A+ A+  A
Sbjct: 1   EALARQLQTAVQRPYAYDGQAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQA 60

Query: 685 KHRGGNH--VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K  GGN             ++R+ ++ DL   V N E  L + PI + +   +VG+EALI
Sbjct: 61  KAAGGNALAFHQPTDDPADAERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALI 120

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G ++ + F+ +AE + +I  +  ++L+     ++SW  Q      ++ +N++ 
Sbjct: 121 RWHHPVHGLVAPATFIPLAESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSP 179

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +   D    + ++  I  T   P RI L  +ES++M +P  ++ LL  + ++GI   +DD
Sbjct: 180 QQFRDPRFTQSVRDAIKLTGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDD 239

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P   +K + S +     +    AI+ +++ +A+ +E  ++A+ +  
Sbjct: 240 FGTGYSSLAYLQSFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVET 299

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           E     LT MGC++IQ   V   L  + + +  + +
Sbjct: 300 EAQRTLLTEMGCNHIQGWLVCQALPSDELAQRFEAQ 335


>gi|256393772|ref|YP_003115336.1| diguanylate cyclase/phosphodiesterase [Catenulispora acidiphila DSM
           44928]
 gi|256359998|gb|ACU73495.1| diguanylate cyclase/phosphodiesterase [Catenulispora acidiphila DSM
           44928]
          Length = 558

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 20/351 (5%)

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  +  ++  P+ +  R++TVTASIG     ++     ++L+ A+LA+Y AK  G 
Sbjct: 207 VERVAERVLAALRDPLRVEGRDLTVTASIGAVEALAAASAPEDLLRAADLALYWAKGEGR 266

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +    F      +D     +  DL  AVE+ + Y  Y PI+ L D  + G+EAL++W HP
Sbjct: 267 DRWTLFDAERAGADVARYRLAADLPAAVESGQFYCEYQPIVSLSDGAVTGVEALVRWRHP 326

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           ++G +    F+ +AE+  +I  +   +L    +   +W D    P   + +N+A +   D
Sbjct: 327 RFGIVPPDRFISLAEDSGLIVELGRRILSEACQAAATWPDAPGQPAPPVSVNVAVRQCRD 386

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   + + ++++  +P R++L  +ES ++   + ++  L  L   G+++ +DDFGT  
Sbjct: 387 PRLMGHVLSALAESGLAPQRLRLEITESALLPGDDAAQATLRALADKGVAIAVDDFGTGY 446

Query: 868 SLLSYLGYIPFDTVKFNGSLM------------------TGSTEKRIAILRSIIPMAKNI 909
           S LS+L  +P   +K +G+ +                  TG       I+ ++  +   +
Sbjct: 447 SNLSHLRRLPVHILKIDGTFVAGLASAGAVGAAAGAAGTTGPCGADEQIIATVTALGHAL 506

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
             T+ A+ +     ++ + R+G D  Q    +  L    IL LL    PL 
Sbjct: 507 GLTVTAEGVETAGQLETVRRLGVDTGQGWLFSRALPAAGILDLLARGAPLA 557



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+PNR      L             R  +  +D+D +++IN +LG   GD  L ++
Sbjct: 56  DELTGLPNRAMLGRWLE-ARTGPRARPGQRIGLCSLDLDGFRQINALLGFGAGDRFLAAV 114

Query: 596 TRRIGELLKFPD-ILARLSGNRFGIILI 622
             R+  +L+    +LAR  G+ F +++ 
Sbjct: 115 ATRLRAVLEPGGHLLARTGGDEFAVLVD 142


>gi|160938200|ref|ZP_02085555.1| hypothetical protein CLOBOL_03093 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438573|gb|EDP16330.1| hypothetical protein CLOBOL_03093 [Clostridium bolteae ATCC
           BAA-613]
          Length = 752

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 94/439 (21%), Positives = 186/439 (42%), Gaps = 9/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA--TDDNLRPTVMVIDIDKYKKIND 581
            + + ++  A+ D+LTG+ N   F   +   L+       +     +   D+  +K IND
Sbjct: 307 NNQKMLMELAYSDSLTGLRNFAGFKREVEIFLNRPEISRSELTSYVLWYGDLRNFKLIND 366

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VLG   GD +L  +   +  +     I  R++ + F  I     ++  +      +++ +
Sbjct: 367 VLGYEEGDRLLRLVAEFLRTVEGPGCISCRIAADNFAGI-TRCEDTQVLDSGLCQLKEYM 425

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                  +  + +   +        K +   ++  A +A   AK R G+    +  S  R
Sbjct: 426 RNSGMDEQPFMEIPVGVYRFRAGDGKQSLDVLVNYANMAHKIAKERPGSSYVFYDDSLRR 485

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFM 758
                  ++ +   A+E  E  L   P I + +  +I G E L +W  P+ G I    F+
Sbjct: 486 RMLEDTVLESEAEAAMEEEEFKLYMQPKIDIQNGNQITGAEVLARWLSPRRGLILPGNFI 545

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E+  +I  ++ +M E   R   S  +Q    P+ + +N++   L  N+  +    + 
Sbjct: 546 PLFEKSELIVKLDRYMFEHACRWYRSHLEQGGR-PVSLAVNVSKAGLFQNDFVDYYTDIK 604

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +K       ++L F+ES++  + E    L+  L   G   +LDDFG+  S L+ L  +P 
Sbjct: 605 AKYSIPDRVMELEFTESILAADTELFAELVVNLNARGFICSLDDFGSGYSSLNLLKNLPI 664

Query: 879 DTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +      S +  +   ++ ++I MAK ++   IA+ +     ++ L + GC+ IQ
Sbjct: 665 DVLKLDILFFQKSRDIRRERIVVSNVINMAKELDIKTIAEGVEDMDTVEFLRKAGCNVIQ 724

Query: 937 DSHVASPLGFNSILKLLKE 955
               A P+       LL +
Sbjct: 725 GYVFAKPMPQEDFEHLLTD 743


>gi|239624233|ref|ZP_04667264.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520619|gb|EEQ60485.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 726

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/524 (21%), Positives = 219/524 (41%), Gaps = 38/524 (7%)

Query: 443 GSMHGPIRNWLPYIH---------INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           G M   I+ WL   H           D       L   +   +      F +     +  
Sbjct: 214 GDMESHIQAWLDQNHQGGVRDIEEPQDILPESFELYQDMEREQVSNMAVFPIVCKKGELG 273

Query: 494 WMIIRIRPMSNSNGDILRYI-GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           ++++  R + +S   +   +  IA +I++++ + + +  + + D+LTG+ NR S  DR  
Sbjct: 274 YIVMLERKVQDSLDLVDMLLYFIAQEISKRQDA-KKLEYSIYNDSLTGLLNRSS-YDRFR 331

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
                   D+ +   V++IDI+  K +ND  G   GD ++      I +       + RL
Sbjct: 332 RSF---KADNVVSIGVIIIDINDLKSVNDTRGTEAGDALIRQAAGIIEKQF-GDCAVFRL 387

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
           + N F II+ + + S     F   +R+        +     ++ S G            +
Sbjct: 388 NSNEFDIIMENISYSEFEHRFGALIRE--------MNSRQNLSVSAGRVW--------DD 431

Query: 673 MLKNAELAMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
             KN + AM  A        + +     S   S R+ + + L  ++E+ E  +V  P + 
Sbjct: 432 RQKNLDWAMKQAGELMRIDKQRYYETKPSLTGSGRLDLIKRLLHSIESREFRVVLQPKLY 491

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L      G EALI++ HP+ G I  S F+ + E   +I  ++LF+ E   R +  W    
Sbjct: 492 LKTGTCAGAEALIRYYHPEKGIIMPSRFIGLLERENLISYVDLFVFEECCRLLEQWDQIG 551

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + +  N +   LL+ ++   + ++  K    P+++++  +ES+     +     L 
Sbjct: 552 YREQV-LSFNFSRMTLLNADIVSSVASIAKKYDVHPNKLEIEVTESIGELGRDMVYKALA 610

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAK 907
             +K+G  ++LDDFGTK S +  L  + FD +K + SL+      +++  I++ II M  
Sbjct: 611 EFKKLGYRISLDDFGTKYSNMDILSDVEFDVLKLDKSLVDKIDRDKVSGQIVKHIISMCH 670

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +++   IA+ I  E+    L +  C   Q      P+      +
Sbjct: 671 DMKIQTIAEGIEEELQEAYLKKCRCMIGQGYLYGKPMEVEEYER 714


>gi|74314217|ref|YP_312636.1| putative phosphodiesterase [Shigella sonnei Ss046]
 gi|73857694|gb|AAZ90401.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 651

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFAHPLPIEIFEESYLEEK 651


>gi|56461269|ref|YP_156550.1| membrane-anchored signaling protein (PAS,GGDEF,EAL doamins)
           [Idiomarina loihiensis L2TR]
 gi|56180279|gb|AAV83001.1| Membrane-anchored signaling protein (PAS,GGDEF,EAL doamins)
           [Idiomarina loihiensis L2TR]
          Length = 754

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/444 (23%), Positives = 217/444 (48%), Gaps = 11/444 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           YI   +D+T  K     +   AF ++LTG+PN  S    LT +LD   +D      V+V+
Sbjct: 310 YIATLSDVTRMKLQQRQLQKLAFFNDLTGLPNSNSLALDLTRLLDELPSDR--LAAVIVM 367

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           +++ + ++ND  G  +GD +L  L  R+ + + F   L  L G+ F ++L      + I 
Sbjct: 368 NVNHFHQVNDQYGHHIGDKILQRLALRLKKAVPFGTKLYNLGGDEFAVVLNHIVEYIDIQ 427

Query: 632 DFAIAMRKSIAMPINLLE--REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +  + ++ +   P  L +  R++ + ASIG + +      + ++L  A LAM  AK    
Sbjct: 428 NIILEIQAAYEPPFILSDSQRQVQLAASIGASVYPLDGYDAEKLLAQANLAMNSAKDEHN 487

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                F+    +   D + ++ED+   ++  ++ LVY P++ +   ++VG+EAL++W+HP
Sbjct: 488 ESSTYFKQELETRSYDEIQLEEDVRSVLQTGQMQLVYQPVLNMQ-HQVVGVEALLRWEHP 546

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G++   +F+   +   M+  + ++++E++   I  W++Q +  P  I IN+A++ +  
Sbjct: 547 DLGSLKPDQFLPQFDANGMLDTLGVWVVEQVIEQIDLWQEQ-DTVPGKIGINLATEQISQ 605

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L + +   + KT    ++++   SES +      +  ++ +L ++GI+L +D FG   
Sbjct: 606 K-LYQTVSQFVKKTPKLAAKLEFDLSESSLQEPLPHTLEIIEQLHQLGITLVIDRFGKGV 664

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + + +L  +P   +K     +      E+   ++R++I M   +   + A  +  +  + 
Sbjct: 665 ASMLHLKTMPVSKIKIEREFIRDLDTNERSRNLVRAVIRMTSELGLEVQAVGVENQAQLD 724

Query: 926 ELTRMGCDYIQDSHVASPLGFNSI 949
            L   GC Y Q      P   +++
Sbjct: 725 TLAEFGCHYWQGKLYMLPQTADTV 748



 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             + +   ILG ++  +      WL  IH ND    +    +  G+   +   E+R R  
Sbjct: 117 WVSTNCERILGYSTEEVMA-PGWWLNNIHPNDVKTVKKT--ALRGFEEEQFVCEYRFRHQ 173

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL--CNAFQDNLTGIP 542
              + W+      +  S+   LR+ G   +I+        I    ++  D L+GI 
Sbjct: 174 QGHYVWVRDE---VRRSSQKPLRFQGSWTNISADYYDTTSINSGKSSEHDVLSGIA 226


>gi|315637553|ref|ZP_07892760.1| diguanylate cyclase [Arcobacter butzleri JV22]
 gi|315478144|gb|EFU68870.1| diguanylate cyclase [Arcobacter butzleri JV22]
          Length = 611

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/529 (19%), Positives = 213/529 (40%), Gaps = 33/529 (6%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+  +          +   A   + G   + +      D + F+ + ++    +      
Sbjct: 94  DLKGNITYVNDKFCEVSLYAYEEVIGKPHSIVRG--EEDDEIFQQLWETIKNKK--VWYG 149

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             + R  + +F+W+ I IRP+ N   +I+ Y+ I ++IT+     E +  N   D+LT I
Sbjct: 150 VLKNRKKNGEFYWVNINIRPILNEKDEIIEYVAIRHEITDLVLKTEELKRNLRLDSLTNI 209

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR   ++ +           ++ P + ++DI  +  +ND  G   GD VL  + R+I E
Sbjct: 210 GNRYKLIEDV---------SKSVNPCISILDIVSFSDVNDFFGYKTGDSVLKIVARKIEE 260

Query: 602 LLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
           LL       + R   + F I+  +E+    I +     +    +PI +  RE+ V  S  
Sbjct: 261 LLIDKENYKVYRDHSDTFCIVAENEDRDKFIKNIDEISKTIGKVPIVIKSRELYVQLS-- 318

Query: 660 FASWTSSKITSSEMLKNAEL--AMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
              +  S  +   +L+ A +     HA      + ++  +       +     +  A++ 
Sbjct: 319 ---YVFSFESKENLLETANIIKRYSHANKNIIIYDKALELEKDYEKNIFWTLKIKKALDE 375

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            ++   + PI  L   +I   EAL++        IS   F+ I+++      +   M+++
Sbjct: 376 DKIVPYFQPIYNLKTNKIEKYEALVRLIDGNN-VISPYYFLDISKKSKQYLQLTKTMIQK 434

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                    D          IN+  +D+    +   +  L+ +      R+     ES  
Sbjct: 435 TF-------DYFKDKDFEFSINLTFEDIKSEYISSFIIELLKEYKI-GHRVVFEIVESEE 486

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895
           + N  +       +R+ G  + +DDFG+  S   YL  +  D +K +GSL+      +  
Sbjct: 487 IDNFRKINEFFVTIREYGCKIAIDDFGSGYSNFEYLAKLNVDYIKIDGSLIKDILINKSS 546

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             I+  ++  AK  +   IA+ +  +  + ++  +G DY+Q  ++  P+
Sbjct: 547 QNIVSMLVNFAKGQKVKTIAEFVSNKDILNKVRELGIDYVQGYYIKEPI 595


>gi|254459152|ref|ZP_05072574.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207084045|gb|EDZ61335.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 719

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/572 (17%), Positives = 206/572 (36%), Gaps = 41/572 (7%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +++    ++ I    +  + A   + + +   +     +        I G    
Sbjct: 175 LQTAASIVSMIMKNRKIEKRIKLFATAAQNAAEGMIITNKENKIIEVNQAFEDIYGYTEA 234

Query: 444 SMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G     +    H  D   +  + +S   +   +   E   + AD       + +  +
Sbjct: 235 EVIGHNPNIFASKKH--DEKFYSDMWESI--HNDSKWAGEIINKRADGSEIVQWMSVSAL 290

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            + +     Y+ + +D+TE KKS + +   AF+D+LTG+ N+      L +    +    
Sbjct: 291 YDEHDKGYNYLAVFSDLTELKKSQKQVEDMAFRDSLTGLCNKTHLEQLLKSDEQKNLLLL 350

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           N+           +  IN   G  VGD +L+ L   +           R++ + F ++  
Sbjct: 351 NVNN---------FSYINTAYGFEVGDKLLIKLANILQNNFNANST-CRINSDEFALLFY 400

Query: 623 SENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            + +   I      +++      I +    + ++ + G A           +L+N+ LA+
Sbjct: 401 EDID---ITHTTAEIQEYFYNKEIVIDNITLNISFTYGAA----HGCDY--LLRNSALAL 451

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIK------EDLCLAVENSELYLVYHPIIRLMDEEI 735
             AK  G N++  F   +        +        L  A+    +   Y  I   +  EI
Sbjct: 452 KQAKESGKNNLYIFNQDADSIGHSQRESFIASNNLLHNALSEGRVIPFYQGIRNNITNEI 511

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              E L + +      IS  EF+  A    ++  I   ++++    + S           
Sbjct: 512 TKYEVLARIE-KDGEIISPYEFLEPARLSGLLPEITKAIIDKSFNFMAS-------NNYS 563

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
             INI   DL  N L E +     +      R+ L   E V     +     L +L+  G
Sbjct: 564 FSINITEDDLSKNYLLEYLNEKELEYGIESERVILEILEGVSANGKKNHIKQLTQLKNRG 623

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTI 913
            S+ +DDFG++ S    +  +  D +K +   +    +   +  + R+I+  AKN     
Sbjct: 624 YSIAIDDFGSEYSNFERVLDLDIDFLKIDAKYIKDIHKNSKSYEVTRAIVFFAKNAHIPC 683

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           IA+ ++     K +  +G +Y Q  H + P  
Sbjct: 684 IAEFVHNAEVQKIIEDLGIEYSQGYHFSEPSP 715


>gi|223983034|ref|ZP_03633239.1| hypothetical protein HOLDEFILI_00518 [Holdemania filiformis DSM
           12042]
 gi|223964997|gb|EEF69304.1| hypothetical protein HOLDEFILI_00518 [Holdemania filiformis DSM
           12042]
          Length = 681

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 171/365 (46%), Gaps = 11/365 (3%)

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I E +    I  RLS ++F  ++       +               IN L     V 
Sbjct: 1   AEMIQEKIGERGICGRLSADQFACLIRRPQAYPQEYFIHA------NSEINTLANMQNVV 54

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCL 713
              G       +++  +M   A LA+   K +  N+V ++  +          I + +  
Sbjct: 55  VKWGVYVIRDKQVSVEQMCDRALLAVRRIKGQYNNYVAAYDDTLRNKLLREQAITDSMEA 114

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++  +  +   P  ++ D+++ G EAL++W+HP+WG  S +EF+ + E    I  ++ +
Sbjct: 115 ALKERQFVIYLQPKFQIKDDQLAGAEALVRWNHPQWGFQSPAEFIPLFERNGFITKLDQY 174

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E+   ++  W DQA  P I + +N++  D+ +++L + +  ++ K    PSR+ L  +
Sbjct: 175 VWEQSCAELHRW-DQAGYPQISVSVNVSRADIYNSDLIDFLTRILKKYELQPSRLHLEIT 233

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           ES    NP +    + +LR +G  + +DDFG+  S L+ L  +P D +K +   +   T 
Sbjct: 234 ESAYTENPGQIIATVEQLRTLGFVIEMDDFGSGYSSLNMLNQLPLDILKLDMKFIQNETA 293

Query: 893 -EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 ILR I+ +A+ +  +++A+ +     ++ L   GCDY+Q  + A P+      K
Sbjct: 294 KPTNQGILRFIMSLARWMNLSVVAEGVETREQLERLRETGCDYVQGYYFARPMPCEEFEK 353

Query: 952 LLKER 956
           LL+++
Sbjct: 354 LLRKQ 358



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 8/167 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++  ++  + +   A++D LTG+ NR+       + +  +   D+    +   D+D  KK
Sbjct: 498 LSVLRQQEQILREEAYRDYLTGLLNRRGL-----SAVCQALRQDDAPLALFRFDLDNLKK 552

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD  +   +  +    +  DILARL  + F +++        +     A+ 
Sbjct: 553 VNDQLGRDQGDQRIRQFSHLLRSHFRQSDILARLGQDEFIVVMKKTARKEAVVRKGEALG 612

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           ++         +++ +T S G A W  S  T  E+L  A+ A+  AK
Sbjct: 613 QAFVE--AGWNQDVPLTVSAGIAMWDLS-ETLDEVLARADSALKCAK 656


>gi|237735029|ref|ZP_04565510.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381805|gb|EEO31896.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 976

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 185/435 (42%), Gaps = 22/435 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E    N + DNL+G+ NR SF   L+       +       V++ DI+  K+IN  
Sbjct: 562 RRLYEKTQYNLYHDNLSGLLNRNSFTQFLSYENSAVYSQG-----VILADINGLKEINRD 616

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD ++  ++  +       + + RLSG+ F II+ +      I          + 
Sbjct: 617 FGHYHGDKIITIISSIMNSYF-PSEKIFRLSGDEFIIIVNNLEYKQFIEATKQMEDTLL- 674

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                         S+G+  W+   +  ++++  AE  M   K     + E         
Sbjct: 675 -------GSTPNGVSLGYT-WSEDNMDINDLIHQAEELMMINKQ---IYYERADTYKKHY 723

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               ++  L    +  +  +   P   +   ++V  EAL++ ++P  G I  ++F+   E
Sbjct: 724 SPKKLENLL-KCFKAKQFVVYLQPKFDIDQNKVVSAEALVRLEYPGHGLIMPNKFIPTLE 782

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  M + ++ +M E+I   +  W+ +     I I +NI+   LL+++    ++ + +K  
Sbjct: 783 KERMTRYLDFYMFEQICEILERWQKEGKEL-IPISVNISRLTLLESDFTNSLKRIKNKYN 841

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + I L  +ES+   +      +  R++ +G +++LDDFG K + +S L  + FD +K
Sbjct: 842 IPNNFITLEITESIGNIDRSIIATISKRIKDLGFNISLDDFGAKYANMSLLSTLNFDELK 901

Query: 883 FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S++           IL  II M K I    +A+ +  E  I+ L  +GC+ IQ  + 
Sbjct: 902 IDKSMIDTLVNNDKCQTILHHIIEMCKKINVACVAEGVETEKQIELLVCLGCNIIQGFYY 961

Query: 941 ASPLGFNSILKLLKE 955
           + P+          +
Sbjct: 962 SKPIPLQEFEDKYHQ 976



 Score =  185 bits (470), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 119/298 (39%), Gaps = 17/298 (5%)

Query: 456 IHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDI 509
           +H +D++ F   L               +  E+R   A  +  W+   I  +       +
Sbjct: 25  VHPDDKNKFYQELHPHRLKKLFEQGITEVYCEYRSLNATQKQGWVSTTIHLLHVGETNKL 84

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++    DI ++K     +L  +  D LT + NR +F   +   L+      +    ++
Sbjct: 85  FGFV-YVKDINDKKIHELELLRQSQSDPLTKLYNRTAFGQIVNEYLNKKRESSS---ALL 140

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +IDID +K IND LG + GD VL  +  ++  +     I+ R  G+ F I +    +   
Sbjct: 141 LIDIDNFKNINDNLGHSFGDTVLCEIAHKLTNIFNNKAIIGRYGGDEFIIFIKDIPSKKY 200

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + + + +  +   +E T+++SIG         T  E+ +  + A+Y AK  G 
Sbjct: 201 VYHKASIILEELHLYYSSNYQEYTISSSIGITFSPDDGKTLHELFEQTDSALYRAKKLGK 260

Query: 690 NHVESFRVSSFRSDRVM-------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +   +F  S      V        + ++L   V  S L       +     EI G+EA
Sbjct: 261 SQYFAFNDSYQDITPVTNYISKGWLIDELDEIVYVSSLDTYELLYLNRKGREITGIEA 318


>gi|325970886|ref|YP_004247077.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
 gi|324026124|gb|ADY12883.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
          Length = 754

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 191/436 (43%), Gaps = 17/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    IL  A+ D LTG+PN +++   L  I             ++V++   ++ +N + 
Sbjct: 327 RKNRRILSLAYLDELTGLPNLRNYHAYLEEI-------RCQHLALVVLNPLNFRLLNILY 379

Query: 584 GIAVGDDVLVSLTRRIG--ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G   GD VL+++ + +    +        RLS +RF +++  E +   +      +    
Sbjct: 380 GYDHGDKVLINIAQHLRARSIAWEAMQPFRLSDDRFLLVIRDEESLEYLLSICQQLLNIK 439

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                +   E+    SIG          ++ +LK A +A+          V +  +    
Sbjct: 440 QETGLIGSIEV----SIGLVQSIGPFHDATRLLKEALIALNATSPTHQIQVYNSELEERL 495

Query: 702 SDRVMIKEDLCLAVENSE--LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                I++++  A+   E  L LVY PI      +IV  EAL +    K G+IS  EF+ 
Sbjct: 496 VRADTIEQEIKAALHGDEGILSLVYQPIYDSDAAQIVSFEALARMKSKKLGSISPVEFID 555

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I  +   +L      I   +       + + +N+++  L++      +  L  
Sbjct: 556 IAEKRQLIIPLGKKILSIACDFINELQGLGIY-DVSVAVNVSALQLMEEPFITYLLNLTK 614

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +     +++++  +ESV   + +     L  LR +GI +++DDFGT  S LS L  +  D
Sbjct: 615 EKQIPLNQLEIELTESVFAKDIQFISSQLRELRNLGILISIDDFGTGYSSLSRLETLEID 674

Query: 880 TVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + S +           +  II +A +IE  +IA+ +  E    EL ++GCDY+Q  
Sbjct: 675 YLKLDKSFVEKLKTNSENGFVSDIISLAHHIEKLVIAEGVETEEQESELQKLGCDYVQGY 734

Query: 939 HVASPLGFNSILKLLK 954
             + P+G    L+LL+
Sbjct: 735 LYSRPVGREQALQLLE 750


>gi|302188849|ref|ZP_07265522.1| EAL:GAF [Pseudomonas syringae pv. syringae 642]
          Length = 607

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/424 (24%), Positives = 189/424 (44%), Gaps = 11/424 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D  TG+ NR    + ++  +  S         V +I       I   LG +   D++ 
Sbjct: 168 FIDQPTGLYNRSRLQEDISQAVASSVDYQ--LVAVDMITSAFLNDIVKALGYSFSQDLVT 225

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++  R+  LL     L ++S  RFG +L  E            + K    P+      + 
Sbjct: 226 AIKNRLECLLPPTCSLYKVSPTRFGFLLAGERTPEH---LFRTILKDFETPVECRGIPVQ 282

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLC 712
           +   +G  +   + +   + ++    A   A+ R  G  +      + +     +   L 
Sbjct: 283 MQVGLGVVTLNRNPVEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLSSLT 342

Query: 713 LA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++ ++
Sbjct: 343 GAVHAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMRPLS 402

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L++L R       W+ Q       I IN+  +DL      + M  L+ K    P+R +L 
Sbjct: 403 LWVLTRAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGKHKIDPTRFELE 460

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+   
Sbjct: 461 FTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNL 520

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+   ++
Sbjct: 521 ASDKTDQRLVKALIGLAKKLGYWVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEAEAL 580

Query: 950 LKLL 953
           L  +
Sbjct: 581 LNWI 584


>gi|255654855|ref|ZP_05400264.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296449599|ref|ZP_06891376.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296878079|ref|ZP_06902094.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296261663|gb|EFH08481.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296430832|gb|EFH16664.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 642

 Score =  328 bits (842), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 191/424 (45%), Gaps = 12/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ NRQSF+  L   ++           ++ I +D +K +N+  G   GD  L  +
Sbjct: 222 DDLTGVLNRQSFIQELDLNINTEQ-----SGFIITIALDDFKFMNETFGTKNGDIALKEV 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + +   +   + + R+ G+ F I++ S+    K  D    + +       + E    + 
Sbjct: 277 GKYLV-HIHDVNHVYRIGGDIFSIVVNSQLGI-KPEDLIKKIEERFKKTWLVEEISFNLA 334

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
            SI    +  +  T+ +++   + +++ AK             +S     + +IK  L  
Sbjct: 335 TSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKRKHVIKNCLEE 394

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++N    + Y PI           EAL++ +H + G I   EF+ IAE+  +I  I L 
Sbjct: 395 ALKNDGFEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFITIAEQTGLINLIGLV 454

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E++ R I S   +       I +N++    +   L + +  L+ K   SP++ KL  +
Sbjct: 455 VFEKVCRFIASDEFEGLKLD-NIAVNLSVVQCMQKNLADDLLYLMDKYNISPTKFKLEIT 513

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+V MG+    +  + RL  +G+   LDDFG   S +S +  +PF  +K + SL+    E
Sbjct: 514 ETVAMGSFNIIKETMERLIDLGVKFALDDFGIGYSGVSNMLSLPFSVIKLDKSLIWSMNE 573

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  + +II +   +    +A+ +      ++L  M C+Y+Q  + + P+  ++   
Sbjct: 574 DSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPIPEDAFKN 633

Query: 952 LLKE 955
           LLKE
Sbjct: 634 LLKE 637


>gi|240144597|ref|ZP_04743198.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
 gi|257203368|gb|EEV01653.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
          Length = 563

 Score =  328 bits (842), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 103/558 (18%), Positives = 200/558 (35%), Gaps = 26/558 (4%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
             +      D ++ +D+  +    +        ++   +       +  ++  DR     
Sbjct: 18  FEIITECMDDYLYIFDLQNNTFEISQSAVERFNMSKNVLTDAANEVMKVVYEEDRRMLAK 77

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L      R       +R    +    W+  R   + +  G     +G  N+   ++++ 
Sbjct: 78  HLADICEGRENIHNLHYRWLDKEGMPVWINSRGIVIIDQQGKAEYLVGCLNETGNRRRA- 136

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                    DN+TG+     FL  L      +  +   +   M + ID +  IN   G  
Sbjct: 137 ---------DNVTGLLGGPEFLAYL-----RAQKESITKGFFMHVGIDDFGAINSSRGAD 182

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            G+ +L S+   + E L     +  L  +++ I+ +  +++         +   +   I 
Sbjct: 183 YGNYILKSVAGCMKECLSDKQRIYHLVADQYVIVDLEASSAEDAVALKEKITDKLHNFIV 242

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV- 705
               E   + SIG     +    + E  K  E A+  AK  G N    F    +      
Sbjct: 243 AENYEAIFSISIGVIDAATFWEGTEECRKKFEFALKQAKSMGKNGFYIFDQDDYEVFLRK 302

Query: 706 -MIKEDLCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQ---WDHPKWGNISSSEFML 759
             I   L  A+ N      + Y PI+    E+I+G EAL++           +S  EF+ 
Sbjct: 303 GRIIATLRNAIVNHYDGFEVYYQPIVDCQSEQIIGAEALMRFSMITEEGREFVSPMEFIP 362

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + EE  +I     ++L   A      +    +P   + +N++   +L   +   +   I 
Sbjct: 363 LLEETGLIIPAGRYILNEAAAMCCEMQK--YIPDFRMNVNVSYVQILQGNVERDILDAIQ 420

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K       + +  +ES  M            L K GI   +DDFGT  S L  +  +   
Sbjct: 421 KYSLQMECLCVEMTESGFMDMTPSFCKFRKTLDKNGIPFVIDDFGTGYSNLHCIRDMSPS 480

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK +        ++++   + ++IIPM  +I+  I A+ I  +  + ++  M  DY+Q 
Sbjct: 481 YVKMDRDFTAKAMNSDRDYELYKNIIPMVHSIDVRICAEGIEEKEWLLKMKEMKVDYLQG 540

Query: 938 SHVASPLGFNSILKLLKE 955
            +   P G    L+    
Sbjct: 541 YYFGRPCGKKQFLQQYAS 558


>gi|317471234|ref|ZP_07930599.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901281|gb|EFV23230.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 645

 Score =  328 bits (842), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 194/426 (45%), Gaps = 10/426 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNR+  L+ L  ++  S      +  ++V+ +  ++++N+  G   GD+ L ++
Sbjct: 222 DYLTNVPNRKELLNMLGLMIKKS---PEKQFVLVVVSLRDFRQVNNTCGQQKGDEFLKNV 278

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              + E +   + + R SG+ F ++    ++  +I      +R+ +  P  + +    ++
Sbjct: 279 CDFLYE-IGPKNHVYRFSGDEFALLFTH-SDETEIKKCITDIRQRMEKPWQIGDYRFLLS 336

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
             +G    +    T  E++   E A++ AK    G        +      R  +   L  
Sbjct: 337 VVMGIIWHSGDGETLEEVINAVEYAVFRAKSGKSGEICYCDKEMLDGLERRRKVIMILKE 396

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + +    + Y PI  + D E    E+L++      G I  SEF+ IAEE  +I  I   
Sbjct: 397 KIADRSFEMYYQPIYSVADGEFCYAESLMRIPESPIGPIYPSEFIPIAEETGLIIDITYI 456

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ML+++ R I     Q  +P   I +N ++     N+L E +  +I +     S IK+ F+
Sbjct: 457 MLDKVCRFISRLL-QRGIPIQAIHVNFSAVQFSQNDLMEKVLEIIRRNHTPMSAIKIEFT 515

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES +  N +        + K GI + LDDFGT  S ++ +  IPF TVK + SL+ GS  
Sbjct: 516 ESTLAENTQVVSKFAVEMEKHGIKMGLDDFGTGYSNIATVINIPFGTVKLDKSLVWGSVE 575

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +K    ++++    + +  T+IA+ +  E   + +   G D IQ  + A P+  + +  
Sbjct: 576 NKKSALTVKNLSRTFQELGMTVIAEGVETEEQSRLIANFGIDQIQGFYYAKPMPEDQLEM 635

Query: 952 LLKERF 957
            + + +
Sbjct: 636 FMIKHW 641


>gi|33601093|ref|NP_888653.1| hypothetical protein BB2110 [Bordetella bronchiseptica RB50]
 gi|33575528|emb|CAE32606.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 458

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 180/436 (41%), Gaps = 21/436 (4%)

Query: 525 SLEGILCNAFQDNLT-GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
               +  +A  D LT G   R+         L L          + ++++  + +++ +L
Sbjct: 31  LRRQMARDALTDALTVGELRRRV------HALVLGKRQRVYSGAMFLVEVVHHPELSAML 84

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+     +L  + +R+  +      +AR S + F +      +     D A  +  +++ 
Sbjct: 85  GLEDNKLLLAMIAQRLQ-MQSDYFQVARHSSDSFMVWAPDL-DPRSARDVAPEVLDALSQ 142

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  L  + + V   +  A +        E+ ++  +AM H     G     F  S    +
Sbjct: 143 PYELRGQPLIVGFRLSGALYAQHGACFDELERSLHIAMLHLDESAGAAWNMFEPSMLEHQ 202

Query: 702 SDRVMIKEDLCLA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++ DL +A       +  + Y P+   +   I G EAL++W HP  G++S +  +
Sbjct: 203 RHYQGLEHDLRVALVSSSMDQFEVCYQPVCDSVTGTIYGCEALLRWHHPVHGDVSPALVI 262

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  +  ++LE      I+W          + +N++ + +  +EL   +   +
Sbjct: 263 ELAERTGLIVPLGAWVLETACSRAITWPAA-----WRLHVNVSVRQMYADELPAQVALAL 317

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + +  S  R+ L  +ES+ +   ER    L  +R  G+ + LDDFG   S L++L  +P 
Sbjct: 318 AASRLSAQRLVLEITESLFIQQYERHVATLNGMRAKGVRVALDDFGAGYSSLTHLRRLPI 377

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK +   +           ++ +++ M + +   ++A+ +      + L  +GC  +Q
Sbjct: 378 DWVKLDRGFVAEIEFDAVSREVVSALMGMCRALGLAVVAEGVETPAQREILKALGCREMQ 437

Query: 937 DSHVASPLGFNSILKL 952
              +  P+    I +L
Sbjct: 438 GFLLGRPVSAERIREL 453


>gi|161505842|ref|YP_001572954.1| putative phosphodiesterase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867189|gb|ABX23812.1| hypothetical protein SARI_04019 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 657

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 185/435 (42%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++       NA +  ++ +PN+   +  L  +     T       ++++  +  +    
Sbjct: 220 MQRQSAEQTDNAMRFPVSDLPNKAFLMGLLEQVATRQQTT-----ALIIVTCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 275 VLKETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+ ++   A  A + A+ +G N ++ F  +   
Sbjct: 335 NERLPIQRIQLRPSCSIGIAMYYGD-LTAEQLYGRAVSAAFTARRKGKNQIQFFDPAQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 394 AAQQRLTEESDILTALDNHQFAIWLQPQVGMRGGNVLSAEALLRMQQPDGSWELPEGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L+S
Sbjct: 454 RIESCGLMVTVGYWVLEESCRLLAAWQERG--VILPLSVNLSALQLMHPGMVSELLELLS 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G       ++ +II MA+++   +IA+ +  E     L + G D  Q
Sbjct: 572 PVDILKIDKMFVDGL-PDDHNMVTAIILMARSLNLQLIAEGVENEAQRAWLEQAGVDVAQ 630

Query: 937 DSHVASPLGFNSILK 951
               A P+  +   +
Sbjct: 631 GFLFARPVPADLFEE 645


>gi|84685374|ref|ZP_01013272.1| diguanylate cyclase, putative [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666531|gb|EAQ13003.1| diguanylate cyclase, putative [Rhodobacterales bacterium HTCC2654]
          Length = 522

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 190/437 (43%), Gaps = 9/437 (2%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               A +D LTG+P RQ  +  L+      + D    P  +V++ID    +    G A  
Sbjct: 66  WRVRARRDMLTGLPGRQDLIATLSQGFSSGSNDAGDPPVCLVLEIDNASALESQFGEAGA 125

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIIL--ISENNSLKIADFAIAMRKSIAMPIN 646
             VL +   R+  +L+  D++  L    FGI +      +   +   +  ++ ++  PI+
Sbjct: 126 GTVLRTCAERLKAVLRESDVVTALKPGCFGIAIARTPRTDLEVMIQLSGRLQDAVGQPIS 185

Query: 647 LLEREITVTASIGFASWTSSKITS-SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           L    + +++ +GF+  +         +L  AE A+  A+  G   + +F         V
Sbjct: 186 LDGTRVLLSSCLGFSMPSRVPDQVGESLLDAAESALEEAQKAGPGSIRAFSNGMRPRVSV 245

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +  ++  A+E+ E+   + P +     ++ G EAL +W+HP+ G I+ + F+    E
Sbjct: 246 PDNLTREVLRALEDGEIRPWFQPQVSTDTGQLTGFEALARWEHPEKGQIAPAAFLPAIAE 305

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             + + +   +L      + +W       P  + +N++ ++L +  + E ++  + +   
Sbjct: 306 AGLFERLGEVILYHALTALKAWDKAGLKVP-NVAVNVSPEELRNPRMFEKIRWELDRFDL 364

Query: 824 SPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            P R+ +   E+VV     + +   +  L ++G  + LDDFGT  + +S +       +K
Sbjct: 365 GPDRLVIEVLENVVAQSEDDTTTRNIAALSRLGCGIDLDDFGTGHASISNIRRFDVTRIK 424

Query: 883 FNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S ++   +   +  ++ +I+ MA+ +    + + +    +   L ++GC ++Q   +
Sbjct: 425 IDRSFISQVDTDRDQQNMVSAILTMAERLGLDTLGEGVETHGEHAMLAQLGCGHVQGYSI 484

Query: 941 ASPLGFNSILKLLKERF 957
           A P+ F      +    
Sbjct: 485 ARPMPFEDTATWIDTHQ 501


>gi|323166988|gb|EFZ52727.1| protein yhjK [Shigella sonnei 53G]
          Length = 642

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 211 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 265

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 266 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 325

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 326 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 384

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 385 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 444

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 445 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 502

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 503 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 562

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 563 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 621

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 622 GFLFAHPLPIEIFEESYLEEK 642


>gi|295107172|emb|CBL04715.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Gordonibacter
           pamelaeae 7-10-1-b]
          Length = 1110

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/399 (22%), Positives = 171/399 (42%), Gaps = 11/399 (2%)

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             N    ++  DID++K  ND+ G   GD +L  +   I +L+      ARL  + F   
Sbjct: 6   HPNESYLLVYGDIDRFKVYNDLFGAPAGDRLLADIGAMIRDLMPAGAAAARLRADHFVCC 65

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
               +           M  ++         + T    +G        +  + M   A LA
Sbjct: 66  CSRSSFDPD------RMLAALDAWFASYREDFTFFVRLGIFPIDDPSLDVNLMCDRALLA 119

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           +  AK         F     RS  +    +  ++  A+E  +    + P  R     ++G
Sbjct: 120 LRSAKSGYVGSKYVFYDEKLRSSVLKEQELAGEMIAALEGGQFVPYFQPQYRYATGRMIG 179

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI-FI 796
            E L +W+HP  G +  +EF+ + E   +I   + +M E+  R +  W D   +     +
Sbjct: 180 AEVLARWNHPAKGLLGPTEFIPVFERNGLIATFDYYMWEQACRCLRMWIDGRGVEGAPRL 239

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++  D+  ++LC  ++ L+ +       + L  +ES  M  PE+    + +LR  G 
Sbjct: 240 SVNLSRADIYRSDLCTYLKGLVERYDVPAELLHLEITESAYMEAPEQLIGAVTKLRAAGF 299

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTIIA 915
            + +DDFG+  S L+ L  +P D +K +   +   ++ +   IL S++ MA+ ++  +IA
Sbjct: 300 VVEMDDFGSGYSSLNTLKDVPVDVLKLDMGFLGASASSRGGLILASVVRMARWLDLPLIA 359

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +  +     L  +GCDY+Q    + P+   +  KLL+
Sbjct: 360 EGVETKQQAAYLASVGCDYMQGYLFSKPVDRETFEKLLE 398



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 112/298 (37%), Gaps = 17/298 (5%)

Query: 403  DGERQSLAVLGSGDIVWDWDIVRDRV--TTT---PDIATILGLASGSMHGPIRNWLPYIH 457
              ER  L    +  + +D+D   D V          +     +    +          +H
Sbjct: 823  QDERYRLLTEMTNKMSFDYDSDTDTVLLYIDRTGDGVEAQ--VIPHYLEKLASTRSGVVH 880

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             +D D+ R + +         +  E+R     + + W    +    ++ G     +G+  
Sbjct: 881  PDDMDDVRRMFEDARAG-AAEVSAEYRANYYGHGYAWYRANLFVAHDNAG-AWHLVGLIE 938

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            +I +++         A  D  TG+ N  +  D +   L   A  ++    V+  DID +K
Sbjct: 939  NIEDERDL----RYRAENDAATGLSNHATTQDLVAAALAKPAVREHSVCVVL--DIDDFK 992

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             +ND  G   GD +L  +   +    +  D++ R+ G+ F ++L    +   +      +
Sbjct: 993  AVNDNSGHMEGDALLRKVGSVLRSSFRESDVIGRVGGDEFVLLLKEV-DMDVVLRKLNQV 1051

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            R  I+    +       T S+G  +  S   T  ++   A+ A+Y AK  G N V+ +
Sbjct: 1052 RAQISA-TTVPGLGHAPTLSVGVYATCSDDRTYRDVFTRADEALYQAKRAGKNRVQVY 1108



 Score = 64.6 bits (156), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 53/180 (29%), Gaps = 6/180 (3%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            + +I   ++        ++   +     +     Q +    E +          +  + 
Sbjct: 527 ADSVISLYVLAEETTEEQVLRDRLAAPRDSIPGGLQRLRRQNEARQQLYDAIPCGIVRYT 586

Query: 423 IVRD--RVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR 478
           +      V+       +LG       +     N L  IH +D    R  ++      +  
Sbjct: 587 VGDGQHIVSINKKGCELLGYRDREEFIASSGDNALMPIHEDDVPRHRAGIERLRNGSK-P 645

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
           L + +R   +D    W+           G+ +       D++ +++    +    F + L
Sbjct: 646 LDFAYRYYRSDGTVGWLEGTSAYELGPEGEPM-IQSAFLDVSGRRRKSHELDLQRFTEVL 704



 Score = 38.4 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 88/256 (34%), Gaps = 35/256 (13%)

Query: 413 GSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPI--RNWLPYIHINDRDNFRTILD 469
                + ++D    + +    + A +L L   +    +  +N+L  +   DR      L 
Sbjct: 435 AGPAAIAEYDGETCELIRVNGEFARLLDLDDEAASAELVRKNFLGVLQEEDRAALEEALR 494

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           +           + R R+A  +  W+ + +RP+S ++  I  Y+ +A + TE++      
Sbjct: 495 AASEGDAA---CDLRYRSAAGKGRWLRLHLRPLSRADSVISLYV-LAEETTEEQVL--RD 548

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN----DVLGI 585
              A +D++ G   R    +     L  +     +R TV   D      IN    ++LG 
Sbjct: 549 RLAAPRDSIPGGLQRLRRQNEARQQLYDAIPCGIVRYTVG--DGQHIVSINKKGCELLGY 606

Query: 586 --------AVGDDVLVSLT-----------RRIGELLKFPDILARLS-GNRFGIILISEN 625
                   + GD+ L+ +             R+    K  D   R    +     L   +
Sbjct: 607 RDREEFIASSGDNALMPIHEDDVPRHRAGIERLRNGSKPLDFAYRYYRSDGTVGWLEGTS 666

Query: 626 NSLKIADFAIAMRKSI 641
                 +    ++ + 
Sbjct: 667 AYELGPEGEPMIQSAF 682


>gi|296105260|ref|YP_003615406.1| putative phosphodiesterase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059719|gb|ADF64457.1| putative phosphodiesterase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 668

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 91/502 (18%), Positives = 206/502 (41%), Gaps = 32/502 (6%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H          L++     +   Q E      D++          + + N +  R   
Sbjct: 182 IVHP--LRRIARELNALSPQEQMGHQLELPRLHHDDEI------GMLVRSYNLNQQRI-- 231

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
                   ++  + +  +A +  ++ +PN+   +  L   +    T       +MVI  +
Sbjct: 232 --------QRQQDELNSSATRFPVSELPNKAFLMAMLEQTVARQQTT-----ALMVIACE 278

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +    VL  +  + +L++L  ++  +L    +L ++SG    +I              
Sbjct: 279 TLQDTAGVLKESQREMLLLTLVEKVKSVLAPRMVLTQVSGYDLVVIANGVKEPWHAITLG 338

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   I   + +   ++  +ASIG A +    +T+ ++ + A  A + A+ +G N ++ 
Sbjct: 339 QQVLTVINERLPIQGIQLRPSASIGIAMFYGD-LTAEQLYRRAFSAAFTARRKGKNQIQF 397

Query: 695 FRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F        +  +  + D+  A++N +  L   P + L+  E+   EAL++   P     
Sbjct: 398 FDPDQMEKAQQRLTEESDILTALDNHQFALWLQPQVNLLTGEVESAEALLRVQQPDGSWE 457

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
                +   E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +  
Sbjct: 458 LPEGLIERIESCGLMVTVGYWVLEESCRQLAAWQERG--VNLPLSVNLSALQLMHPTMVS 515

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            M  LI++    P  + L  +ES  + +P  +  +L  LR  GI + LDDFG   + L  
Sbjct: 516 EMLELINRYRIQPDTLILEVTESRRIDDPNEAVAILKPLRNAGIRIALDDFGMGYAGLRQ 575

Query: 873 LGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L +   +P D +K + + + G   +  +++++II MA+++   +IA+ I  E   + L  
Sbjct: 576 LQHMKTLPVDVLKIDKAFVDGL-PEDSSMVQAIIQMARSLNLNLIAEGIETEAQRRWLAE 634

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            G    Q    A  +  +   +
Sbjct: 635 AGVGKGQGFLFARAVPSDVFEQ 656


>gi|75760290|ref|ZP_00740341.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492235|gb|EAO55400.1| Sensory box/GGDEF family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 330

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 171/319 (53%), Gaps = 5/319 (1%)

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVS 698
           +     + E ++T++ SIG A +  S I ++ +LKNA +AMY   AK      +    ++
Sbjct: 1   MKKSFIIHEHKLTLSLSIGIAIYPHSGIDTATLLKNANVAMYDAKAKELNSLSIYDDVIA 60

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ +++DL  A++N EL+L+Y P +     +I+G EALI+W+HP+ G IS  EF+
Sbjct: 61  KKIERRLRLEKDLPNALQNEELFLLYQPQVDSESNKIIGAEALIRWNHPELGIISPYEFI 120

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE   I +I  + LE+  + +  W        + I +N+++K+    +    + + +
Sbjct: 121 PIAEETLQIISIGKWTLEQACKQMKRWH-GLGYSHLKIGVNLSAKEFEQEDFVRSISSTL 179

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + T    S + L  +E + M +   + + L  L+ +GI +++DDFGT  S L+YL   P 
Sbjct: 180 TNTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDDFGTGYSSLAYLPLYPI 239

Query: 879 DTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K     +  + + +  + I+++II +A  +  ++IA+ +  +  +  L +  C +IQ
Sbjct: 240 DTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVETKEHVNFLQKNKCQFIQ 299

Query: 937 DSHVASPLGFNSILKLLKE 955
             + + P+  ++  +LL+ 
Sbjct: 300 GYYYSKPIHIDAFTELLEN 318


>gi|258626478|ref|ZP_05721318.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258581189|gb|EEW06098.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 641

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 197/450 (43%), Gaps = 26/450 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   +      L  +         ++++D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTQLKNRNFIM----KTLKKNHLGKEDAIALVLLDLNRFKELNDTI 244

Query: 584 GIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+ +   +      F    AR+  + F ++L   +       F   +   + 
Sbjct: 245 GYAFGDQLLIKIASLLAIRCQPFGYECARIGADEFAVLLHPCSG--NAEFFIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASW--TSSKIT-----SSEMLKNAELAMYHAKH--RGGNHVE 693
             +   +    ++ ++G  ++    +        +S +L NA+LA++ AK    G     
Sbjct: 303 KLVKDNDPTKRLSIAMGVVTYQNPDTGQANSALRASSLLNNADLALHIAKKTPDGQVVYY 362

Query: 694 SFRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +  +    + + ++ E L         + LY+ Y PI+    E + G EAL++W H ++ 
Sbjct: 363 TREIECAYNKKRILAEQLQQLLSDPNQTSLYVCYQPILSCHSERL-GCEALLRWQHDEFD 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I     + IAEE  + K +  +++E++       W +  +     + IN++   L D  
Sbjct: 422 LIDPQYLIEIAEEYGLGKQLGTWIMEQVYLALKKEWHEYNHRLD--VSINLS-NALFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   ++ +        + I L  +E++ + +   S  ++ +L K+ +   LDDFGT  S 
Sbjct: 479 LPTLIKDIFDHQESFLNSIILELTETMTIEDFAHSLAIINQLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ +A  +E T++A+ +     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLAHQLEMTVVAEGVEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++G D  Q  + + P+         +  F
Sbjct: 599 KQLGVDEFQGYYFSYPITKEEFATFCEHHF 628


>gi|153217049|ref|ZP_01950813.1| GGDEF family protein [Vibrio cholerae 1587]
 gi|124113939|gb|EAY32759.1| GGDEF family protein [Vibrio cholerae 1587]
          Length = 463

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 11  RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 66

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 67  GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 124

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 125 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 184

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 185 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 243

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 244 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 300

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 301 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 360

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 361 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 420

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 421 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 456


>gi|294339478|emb|CAZ87837.1| hypothetical protein; putative EAL and GGDEF domains; putative
           membrane protein [Thiomonas sp. 3As]
          Length = 780

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 200/439 (45%), Gaps = 17/439 (3%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D  + +   E +   A QD+LTG+ NR+   + L    D +  D  +   +++ D+D +
Sbjct: 343 RDSAQLRDRSEIMYRLANQDSLTGLLNRRGMGEYLQRAHDRA-RDHGIGYALVLFDLDHF 401

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD VL  +   +   ++  D +AR  G  F ++L   ++       A  
Sbjct: 402 KLINDGFGHAAGDAVLQQVAHLLQTRVRKEDQVARWGGEEFLVLLPD-SSLETAHATAEK 460

Query: 637 MRKSIAM-PINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVES 694
           +R+ I+   +++   E+ +TAS G ++W      TS+E+L   + A+Y+AK  G N V+ 
Sbjct: 461 LRELISHTRMSVGGAELRLTASFGVSAWEPGGPLTSAELLGQCDSALYNAKAGGRNRVKQ 520

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F   S +         L  A+E+  + + Y P++ L D +I+G EAL +        I++
Sbjct: 521 FEGKSAQDYLQGFT--LKRAIEDDRIRVAYQPLVSLADGQIMGFEALARLVAENGDVIAA 578

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +A  L +   I+  + +++        +Q   P  ++ IN ++  L   E  + +
Sbjct: 579 GQFIDVANRLRLEHRIDSRVSKQVMARCSQRMEQTGTPMKYM-INCSADFLSRPEDVQQL 637

Query: 815 QALISKT----LYS----PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                                + +  +E  ++G+ E  R L+  L   G  L +DDFG+ 
Sbjct: 638 LDRAQHFCSTCAVDMTGKAKPMVIEITERQLIGDAEAVRQLVQPLIDFGFQLAVDDFGSG 697

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S   Y+  +P   +K    L+  +  + +  A++RSI  MA  +    IA+ I  E   
Sbjct: 698 YSSYLYVLKLPVSYLKIEAELVREAAHSARAQAMVRSINSMAHELGILTIAEGIEDEATA 757

Query: 925 KELTRMGCDYIQDSHVASP 943
           + + R+G D+ Q  +   P
Sbjct: 758 EVMRRIGVDWGQGYYWGRP 776


>gi|225412334|ref|ZP_03761523.1| hypothetical protein CLOSTASPAR_05556 [Clostridium asparagiforme
           DSM 15981]
 gi|225042127|gb|EEG52373.1| hypothetical protein CLOSTASPAR_05556 [Clostridium asparagiforme
           DSM 15981]
          Length = 754

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 83/437 (18%), Positives = 172/437 (39%), Gaps = 16/437 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              + +   AF D LTG  N  +F  R  ++ D    +      ++ +++  +K IN+  
Sbjct: 321 AHKKYLEQIAFTDPLTGGLNNAAFQARYRSLADSLKPN---TFAIVFLNVCGFKLINEQY 377

Query: 584 GIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
               G+ +L  L R +         +  AR   + F + L  E++   I      + + I
Sbjct: 378 TTEGGNRLLCHLYRTLERSADHDREEFAARGESDHFFLCLR-EHDPQTIQLRLDQVIREI 436

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                     + +T   G           + +  +A LA  +           +  S   
Sbjct: 437 NASQAADLPALPITVRSGVCLVEDPGQDITILQDHARLASQNPTPDHSRLCAFYDDS--L 494

Query: 702 SDRVMIKEDLC----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +DR+ ++++L      ++E  +  +   P I L D  + G EAL++W+HP  G I  S+F
Sbjct: 495 TDRLRLEQELNTLFDSSLERGDFLIYLQPKISLQDNRLAGAEALVRWNHPVRGIIPPSDF 554

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E    I A++ ++   I   +   +         + +N++ +        +    +
Sbjct: 555 IPLFERNGKICALDRYVFTGICAALAGLKRDGREM-FPVSVNLSRQHFRTPGFLDDFARI 613

Query: 818 ISKTLYSPSRIKLSFSESVVMGN--PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +       I+   +ES+   N   E  +  +  +  +G   +LDDFG   S L  L  
Sbjct: 614 AGQHGIPRGIIEFELTESIFFDNRQIEIVKESIRTMHDLGFLCSLDDFGAGFSSLGLLKE 673

Query: 876 IPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              DT+K + S     + ++   I+ S++ +A +++   +A+ I     ++ L  + CD 
Sbjct: 674 FDVDTIKLDRSFFLNMSGRKAKDIIASLVELAGHLQVRTVAEGIETPDQVEYLRSIHCDM 733

Query: 935 IQDSHVASPLGFNSILK 951
           +Q    + PL     + 
Sbjct: 734 VQGYVFSKPLPIPEFMA 750


>gi|255745309|ref|ZP_05419258.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262156033|ref|ZP_06029153.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
 gi|262167893|ref|ZP_06035593.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|255737139|gb|EET92535.1| GGDEF family protein [Vibrio cholera CIRS 101]
 gi|262023620|gb|EEY42321.1| GGDEF family protein [Vibrio cholerae RC27]
 gi|262030211|gb|EEY48855.1| GGDEF family protein [Vibrio cholerae INDRE 91/1]
          Length = 610

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 158 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 213

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 214 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 271

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 272 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 331

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 332 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDRL-GCEALIRWQHSEFG 390

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 391 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLD--VSINLS-NSLFDET 447

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 448 LPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 507

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 508 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 567

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 568 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 603


>gi|330895415|gb|EGH27753.1| EAL:GAF protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 607

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 103/427 (24%), Positives = 193/427 (45%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + ++  +  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDISQAVASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  R+  LL     L ++S  RFG +L  +            + K    P+     
Sbjct: 223 LVTAIKSRLECLLPPTCSLYKVSPTRFGFLLAGDRTPEH---LFRTILKDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +   +     + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRNPAEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTGAVHAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L R       W+ Q       I IN+  +DL      + M  L+ K    P+R 
Sbjct: 400 PLSLWVLTRAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGKHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYWVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
            ++L  +
Sbjct: 578 EALLNWI 584


>gi|217975059|ref|YP_002359810.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS223]
 gi|217500194|gb|ACK48387.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS223]
          Length = 882

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 192/423 (45%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL+  +         +  ++ ID+D++K+
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S NN     D +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + I+ P  L   E    ASIG       K  TS  ML+NA+ AMY AK  G      F  
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITISGKHKVDTSESMLRNADTAMYQAKANGKGCYVIFDD 617

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +        V ++ +   A+ ++E+ L Y P++     ++  LE+ + W HP  G +   
Sbjct: 618 NAQHQAIQDVELETEFRQALHHAEIELSYLPVVDFNTGQVHALESRLFWQHPLRGLLQQE 677

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +   ++ + +  I R       Q +   I + + ++S+ L    +   ++
Sbjct: 678 QLSALAEQSHLTVELDKYTISIIDRTYAELLKQ-HDESIELHVMLSSQHLKHKHVLRSLK 736

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T  + S + L F+E  ++   E        L+K+G+ L +  +G+  S L+ L +
Sbjct: 737 NTLKQTQLNLSHLWLFFNEKALVQETENHINGFELLQKLGVKLGISHYGSGYSALNSLLF 796

Query: 876 IPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + +L      ++   ++ +    A  +E       I      +  + +G   
Sbjct: 797 LPIKGLKLDANLTKQIHAEQQLKLMSAYQKTASTLELQTFVDGIDSPEQKRIFSELGYQL 856

Query: 935 IQD 937
            Q 
Sbjct: 857 GQG 859


>gi|330879520|gb|EGH13669.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 607

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 101/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLFNRSRLQEDIHEALASSVDYQ-----LVVMDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  R+  LL     L ++   RFG +L  +            + +    P+     
Sbjct: 223 LVTAIKERMESLLPQTCSLYKVGPTRFGFLLAGDRPPEH---LFRTILEDFETPVECHGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPNEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLETGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFH--FRIAINVTPEDLTGPAFTDRMVRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLGWL 584


>gi|167746416|ref|ZP_02418543.1| hypothetical protein ANACAC_01126 [Anaerostipes caccae DSM 14662]
 gi|167653376|gb|EDR97505.1| hypothetical protein ANACAC_01126 [Anaerostipes caccae DSM 14662]
          Length = 927

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 234/564 (41%), Gaps = 37/564 (6%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +D ER   A   S  ++W   I  +++  + +  T +            + L  +  + 
Sbjct: 387 MTDEERLDFAKGLSLKLMWKIRIRGEKLFLSANYQTAV-YPKD--GNSAEDLLNKLITDH 443

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
                     +V      L  + R+ AA                     L          
Sbjct: 444 YMRL------YVESPAEDLTEKCRLLAAGRTDVEFSEYADYQLTELSKALN--------- 488

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
              +  + +   A+ D +  I NR  +L  +  ++     D      V  +DI  + K N
Sbjct: 489 ---QYRKSVEQIAYFDPVYHIGNRMKYLKDVDMLISY---DAKRYFRVYSMDIRSFSKYN 542

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++  ++ GD +L+ +TRR+  +    + L R++G+ F  I    +           +R +
Sbjct: 543 ELFSVSTGDALLMEITRRLEHIF--GNNLYRINGDVFIGISFEADKDKD--HKVGRIRNA 598

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              PI + +   T+   IG   +     TS ++L++ ++A+ +AK  G     +  +   
Sbjct: 599 FQSPIVVEDSTFTLDVLIGICDYPLHAKTSEKLLESVQMAVNYAKTSGAGMANNVILYDD 658

Query: 701 -----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                R +   I   L  +++   L + Y P+  L  E   G EAL++      G + + 
Sbjct: 659 KLLEVRREEARIVRLLETSLKEKTLEVWYQPLYHLKRERFTGTEALVRLPDGNGGYVPAG 718

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           + + IAE+  ++  +  +++ R    ++    +  +    + IN++ + LL       + 
Sbjct: 719 QVIEIAEKNGLVGQVGEYVIHRACTFMMEKGKKLGIES--MGINLSVQQLLVENSVPSII 776

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I KT   P  I    +E+V++ + E ++ +L  L   G+ + LDDFG   S L+YL  
Sbjct: 777 GHIKKTGLDPKCITFEITETVLIQSIELAKGILDELSSYGVRIALDDFGIGYSSLNYLLN 836

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P + +KF+ S+   S  +EK+ A+L+++I MA   +  ++A+ +  E + K LT     
Sbjct: 837 LPVNVLKFDRSMTKKSVDSEKQYALLKAMIQMADINQMDVVAEGVETEEEWKMLTSTSAS 896

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
           YIQ  + + PL    +++ L++  
Sbjct: 897 YIQGFYYSKPLPEEKLMQFLRDNN 920



 Score = 69.2 bits (168), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 +  D  TG+ NR+ F+  +   +      +    ++    I++Y ++  + G  
Sbjct: 293 RYFKNLSIYDEKTGLYNREGFVREVQWWMV----SEPCVFSMFYFSIEEYSRVELMAGFL 348

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
             ++ L S+   + E +K P +  R++G +F + +  E    +  DFA  +   +   I 
Sbjct: 349 KENEYLASVPAVLDEYIKSPYVSGRIAGGKFAVAVKEEMTDEERLDFAKGLSLKLMWKIR 408

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKN--------------AELAMYHAKHRGGNHV 692
           +   ++ ++A+   A +     ++ ++L                AE      +       
Sbjct: 409 IRGEKLFLSANYQTAVYPKDGNSAEDLLNKLITDHYMRLYVESPAEDLTEKCRLLAAGRT 468

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           +             + + L    ++ E    + P+  + + 
Sbjct: 469 DVEFSEYADYQLTELSKALNQYRKSVEQIAYFDPVYHIGNR 509


>gi|109898513|ref|YP_661768.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109700794|gb|ABG40714.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 440

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 190/428 (44%), Gaps = 12/428 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+L  IPNR  FL ++  +L       +   ++++ID+ ++  ++   G  +GD++L++
Sbjct: 5   HDSLRTIPNRHVFLRQIDDMLK-----SHPHHSMLLIDVVRFSDVSSSFGYELGDELLLN 59

Query: 595 LTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +  RI  L       L R+SG+ FG+++  + + +++  F I + +    PI + +    
Sbjct: 60  IANRICYLFDGHGAHLGRISGDIFGLVIPGKFSQVQLQRFYIHLIEHFKTPIGVGDHSFI 119

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDL 711
              ++G  S   S I +S+     E A+  AK    ++            S  + +K DL
Sbjct: 120 ADFNVGAVSNEESAIAASQFFTRVEAALKQAKQNRYDNFCYMSLIDKPNNSRSITLKADL 179

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+   EL + + P + L   +IVG E L++W+HP  G +     +  AE   M+  + 
Sbjct: 180 KRALSRDELEIYFQPKVNLRTLQIVGAECLLRWNHPLDGVLFPGALIEAAESYNMMNEMG 239

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++LE   +             + + +N++   L D    + +         + S+I++ 
Sbjct: 240 YWVLEAAFKGAKELSKANIH--LKLSVNMSPTQLYDPNFVDQLADFALIYAVNLSQIEIE 297

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E V + N       L R+R +G+S+ +DDFG   S L+Y+  I  DT+K + + +   
Sbjct: 298 LTEDVALSNSFVVTSQLTRIRALGVSVAIDDFGKGYSNLAYMRNIELDTIKVDKTFVMEL 357

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            E     A++ +   +A      ++A+ I     +  L  +G    Q    +  +     
Sbjct: 358 AENPINRAVIEASKLIATAANCELVAEGIENIHQLHVLREIGVAEGQGFLFSRAVPLQEF 417

Query: 950 LKLLKERF 957
           + L ++ F
Sbjct: 418 IGLTQQDF 425


>gi|237733323|ref|ZP_04563804.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383535|gb|EEO33626.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 640

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 189/427 (44%), Gaps = 14/427 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             F D LT + NRQ F   +  ++     D+N     +VI +  +K IND  G  +GD +
Sbjct: 217 QMFTDTLTNLLNRQEFNKMIDILI-----DNNKPFIAVVISLKNFKFINDKFGQEIGDQI 271

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +   +  LL     + R  G+ F +I  ++ N   + +    +   +  P  +   +
Sbjct: 272 LLEVCHYLRYLLPKQA-MYRYGGDEFALIFYNKKN---VINALEKIETRMKNPWQISNID 327

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKE 709
             ++   G  ++     +  E++   E A+   K    +++     +  +  R    I +
Sbjct: 328 FIISYVAGGIAYPKVAHSKEEIINGLEYAVSLGKKDNAHNINFCVTAMIKQIRRKYQILD 387

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L + +EN+   + + PI  L        EAL++      G IS  EF+ IAEE  +I  
Sbjct: 388 LLKICLENNSFEVYFQPIYDLKTHSYCKAEALLRLPDNPLGFISPEEFIPIAEENGLIAP 447

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   +L++    I     +       + IN +    + ++L   +  +I K       IK
Sbjct: 448 ITYQVLDKTCLFIKKVIAEKKDFTG-VSINFSVLQFMQDDLENKVLKVIEKHQLPYELIK 506

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES+++ N +     +  +   GI   LDDFGT  S ++Y+  IPF  VK + SL+ 
Sbjct: 507 IEITESMLVTNFDAITNFMTNMINRGIQFLLDDFGTGYSNITYVLTIPFQVVKVDKSLIW 566

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +   EK   +++ +I     I   I+A+ I  +  ++ + + GCD +Q  + + P+ F+
Sbjct: 567 QAMKDEKAAILIKKMIEAFNQIGLHILAEGIETKEQMEFMKKCGCDLLQGYYFSRPVSFD 626

Query: 948 SILKLLK 954
             L ++K
Sbjct: 627 EALNVIK 633


>gi|256372160|ref|YP_003109984.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008744|gb|ACU54311.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 935

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 197/426 (46%), Gaps = 9/426 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A +D LTG+ NR     RL   L  S+        V ++D+D++K++ND++G   GD VL
Sbjct: 374 AERDLLTGLANRSVLTPRLE-TLCRSSRSTEDPVAVALLDLDRFKEVNDLVGHETGDRVL 432

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   +  + +  D++ R+ G+ F ++L   +    +A  A     +I           
Sbjct: 433 RVVAHALAGVAREGDLVVRMGGDEFALVLPGRSGRASLAAEAERWIGAIRDLDWDRLGVP 492

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-- 710
            ++ S+G  S+ + + T   ++++AELA+Y AK  GG+    F  +   + R   +    
Sbjct: 493 QLSGSVGITSFPADRATVEGLVRHAELALYDAKAHGGDRASVFVPAMEVAARRADEARTM 552

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           + +A+E   + L Y PI+   D  +  +EALI+ D P  G I  + F    +   + + +
Sbjct: 553 VVVALERGRVSLDYQPIVS-ADGAVEAMEALIRIDDPDRGRIGPAVFGAALDHPALARRV 611

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIK 829
             ++LE     + +W +        + +NI+ + LLD    + + + + +        ++
Sbjct: 612 GRWVLEEALAQLATWHESGFT--FGVSVNISPQHLLDPRFVDDVASALERLGPVPTRLVE 669

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+  +G+      +L  + ++G+++ +DDFG   + L YL  +P  TVK + S + 
Sbjct: 670 LEITETAALGDTRAVDDVLEAIAELGLTIAIDDFGVGHASLRYLRELPAQTVKIDQSFVR 729

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G   +     I+ S +  A  +   I+ + +      +    +G   +Q  H+A P+   
Sbjct: 730 GMLTSAADFGIVVSSVQAALFLGRRIVIEGVEDAYLERVARSLGEVSLQGFHLARPMPAE 789

Query: 948 SILKLL 953
           ++ + L
Sbjct: 790 AVARWL 795


>gi|218676653|ref|YP_002395472.1| putative transduction protein [Vibrio splendidus LGP32]
 gi|218324921|emb|CAV26713.1| putative transduction protein [Vibrio splendidus LGP32]
          Length = 801

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 181/449 (40%), Gaps = 23/449 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR+SF+  L   L  S    +    ++  DI  ++KIND+ G  V
Sbjct: 337 ELKFEAEFDQLTKLANRRSFIRHLDVRLKSSI---SPHCYLVCWDIIDFRKINDLYGAKV 393

Query: 588 GDDVLVSLTRRIGELL----------KFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           GD+VLVSL + + E L               +ARL GN+F  IL        I +    +
Sbjct: 394 GDNVLVSLAKTLRETLQNQQSSFGFSCSDYSVARLGGNQFIAILE-MGEHQSINEEIENI 452

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA-ELAMYHAKHRGGNHVESFR 696
             ++     L      +  SI             E+     +  + +AK           
Sbjct: 453 NNTLTGTTFLDYYGFRL--SIATGVLPVDTPKFEEIWHRCIDEMLINAKAHSDGESRIVY 510

Query: 697 VSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                        I++ L    E+    L + PI      +I G E LI+          
Sbjct: 511 GEELLHSLERHDVIEKRLLECCESDNFELRFMPIFNAQTLQIDGAECLIRCPALFDIKAG 570

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE   +I  ++++++    +      +        + INI++ +L +    + 
Sbjct: 571 PDEFIPVAERSNLISKLDMWVISTAIKSYKELSEIHKYTG-SLSINISAMELYNRNFADN 629

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +I +    P+ I +  +E+  + + + +   +  +R +G+ ++LDDFGT  +  + L
Sbjct: 630 IRKVIERYQVPPANIIIEITETSYVKSSKLTVQTIESIRSLGLKVSLDDFGTGYTAFNQL 689

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P D +K + S +      +    ++ S++ +  + +T ++ + +        L +  
Sbjct: 690 LHYPVDELKIDKSFIDNIVDDKADRKMVESMVNLGHSCDTFVVGEGVESLEQYHHLKKAN 749

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960
           CD IQ    + PL +   ++ +++  P  
Sbjct: 750 CDLIQGYFFSQPLTYIEFIEFVRDHNPQT 778


>gi|307718009|ref|YP_003873541.1| sensory box/GGDEF family protein [Spirochaeta thermophila DSM 6192]
 gi|306531734|gb|ADN01268.1| putative sensory box/GGDEF family protein [Spirochaeta thermophila
           DSM 6192]
          Length = 478

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 96/447 (21%), Positives = 190/447 (42%), Gaps = 14/447 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKI 579
           + K+    +     Q   TG+P R+      + + + ++ +   +  + +I +D+ Y++I
Sbjct: 39  KLKEEYRQVRRLVDQSPDTGLPVRKGLEQDFSRLTEEASREGK-KLALFLIRLDEKYERI 97

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            +         +L    RRI  +L     L +       +     +   +       +  
Sbjct: 98  ENS--RDRSRVLLFKTARRIRRVLPG---LYQGDRPEEFLGARLVSGGEEAVSLGKEISD 152

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            + +P +    +I     +G   +         + +   +A+  A       V       
Sbjct: 153 VVMVPQDPPAEDIQFGCYVGIVLFPDHGEEWPALFEMLHIAVAEAMREKERAVLYTGEIG 212

Query: 700 FRSDRVMIKED-LCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            R     +  + +   + +   E +L Y PI+      IVG EALI+WD+P  G++S + 
Sbjct: 213 RRHFEEELVLEHMRRVLRDGFEEFHLAYQPIVD-RSLSIVGAEALIRWDNPALGSVSPAR 271

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I AI  ++L R  + +  W  +     +FI +N++      ++L   +  
Sbjct: 272 FIPLAESTGDIMAIGQWVLYRACKQLSLWHARGFRE-LFISVNLSPPQFKLHDLAFRVAG 330

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++    +    +KL  +E V+M +PE +   +  LR +G+ L +DDFGT  S L YL   
Sbjct: 331 ILKSLAFEGKFLKLEVTEGVLMDHPEEAVEKMNELRAMGVKLCIDDFGTGYSSLGYLRRF 390

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFDT+K + S + G         I+R+II +A+ +  + +A+ +  E  +  L   GC+ 
Sbjct: 391 PFDTLKIDRSFVVGVEDDPSLQGIVRAIIGVARALGISTLAEGVENERQLDFLMAEGCEM 450

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVK 961
            Q  + A P+      +LL+E   + +
Sbjct: 451 FQGFYFARPVPPEDFERLLREGVRVAR 477


>gi|167746417|ref|ZP_02418544.1| hypothetical protein ANACAC_01127 [Anaerostipes caccae DSM 14662]
 gi|167653377|gb|EDR97506.1| hypothetical protein ANACAC_01127 [Anaerostipes caccae DSM 14662]
          Length = 645

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 193/426 (45%), Gaps = 10/426 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNR+  L+ L  ++  S      +  ++V+ +  ++++N+  G   GD+ L ++
Sbjct: 222 DYLTNVPNRKELLNMLGLMIKKS---PEKQFVLVVVSLRDFRQVNNTCGQQKGDEFLKNV 278

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              + E +   + + R SG+ F ++    ++  +I      +R+ +  P  + +    ++
Sbjct: 279 CDFLYE-IGPKNHVYRFSGDEFALLFTH-SDETEIKKCITDIRQRMEKPWQIGDYRFLLS 336

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
             +G    +    T  E++   E A++ AK    G        +      R  +   L  
Sbjct: 337 VVMGIIWHSGDGETLEEVINAVEYAVFRAKSGKSGEICYCDKEMLDGLERRRKVIMILKE 396

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + +    + Y PI  + D E    E+L++      G I  SEF+ IAEE  +I  I   
Sbjct: 397 KIADCSFEMYYQPIYSVADGEFCYAESLMRIPESPIGPIYPSEFIPIAEETGLIIDITYI 456

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ML+++ R I    ++       I +N ++     N+L E +  +I +     S IK+ F+
Sbjct: 457 MLDKVCRFISRLLERGIPIQA-IHVNFSAVQFSQNDLMEKVLEIIRRNHTPMSAIKIEFT 515

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES +  N +        + K GI + LDDFGT  S ++ +  IPF TVK + SL+ GS  
Sbjct: 516 ESTLAENTQVVSKFAVEMEKHGIKMGLDDFGTGYSNIATVINIPFGTVKLDKSLVWGSVE 575

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +K    ++++    + +  T+IA+ +  E   + +   G D IQ  + A P+  + +  
Sbjct: 576 NKKSALTVKNLSRTFQELGMTVIAEGVETEEQSRLIANFGIDQIQGFYYAKPMPEDQLEM 635

Query: 952 LLKERF 957
            + + +
Sbjct: 636 FMIKHW 641


>gi|260428134|ref|ZP_05782113.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Citreicella sp. SE45]
 gi|260422626|gb|EEX15877.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Citreicella sp. SE45]
          Length = 592

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 91/435 (20%), Positives = 173/435 (39%), Gaps = 13/435 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++ +    +   A  D LT I N  +F  +    +  +         +M+ID+  +K +N
Sbjct: 165 DEIRRTRRMSQLAELDGLTRILNHHAFKLKCAERIGKADQ----PFAMMMIDVVNFKSVN 220

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII--LISENNSLKIADFAIAMR 638
           DV G   GD  L  +   I   L    ++ R+ G+ F  +  + ++     +    +   
Sbjct: 221 DVYGHQFGDSYLREVALAIVRALPNAAVVGRIGGDEFAALVPIPNQQPEPYLDRLMLGCA 280

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +      L +      SIG A  +S      ++L+ A+ A+Y  K  G      F   
Sbjct: 281 CDVQRAAARLGKPNLGHVSIGCALESSVCPDVEKLLQGADAALYANKSSGKYSGAIFDPD 340

Query: 699 SFRSDRVMIKE-DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S  +   M+       A+ N+EL   + P+I L  + I G E L++W  P+ G ++  EF
Sbjct: 341 SHENFSAMLIRPRFLKALRNNELRPFFQPVIDLATDRICGFEVLVRWIDPQRGVLAPEEF 400

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
             I     + + +   + E   +       +       + +N+ + DL+  E    +Q+ 
Sbjct: 401 ASILAAPELAEKLTRLLFEDALQQFA---RRPGYQSETLALNLGTVDLIKQEFVFDLQSQ 457

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +++      +I +  +E+ ++G         L  +R  G  + LDDFGT    L++L   
Sbjct: 458 LNRYAVQWRQIVIEVTENTMLGAINGPVFQNLTEMRSRGAKVALDDFGTGYGGLAHLRNW 517

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + S + G T   +     R++I +A  +   +IA+ I        L  +GC  
Sbjct: 518 PVDIIKLDRSYVDGITRGPRDAIFARALIEIANTLGLEVIAEGIEDIETANTLRELGCQM 577

Query: 935 IQDSHVASPLGFNSI 949
            Q    +        
Sbjct: 578 AQGYFYSPAAPLEEF 592


>gi|225390485|ref|ZP_03760209.1| hypothetical protein CLOSTASPAR_04239 [Clostridium asparagiforme
           DSM 15981]
 gi|225043449|gb|EEG53695.1| hypothetical protein CLOSTASPAR_04239 [Clostridium asparagiforme
           DSM 15981]
          Length = 645

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 182/426 (42%), Gaps = 14/426 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+  R+ F D++          +      ++I + ++K +N+  G  VGD  L 
Sbjct: 224 HTDDLTGLFTREVFYDQMEQ-----RRQERQPFKTVIISVHQFKMVNEKYGTRVGDAFLR 278

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   I E  K    + R +G RFGII             A A+R+              
Sbjct: 279 QIAEYIREASKE-ATVCRYAGVRFGIIFGGIPQQEFDRYLA-AVRERFERVWIYEGYRCR 336

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           +  S+ +            +    + A+   K RGG     F    + + R    + E +
Sbjct: 337 LPVSMAYIDQYYEMEDVGGLSACLDYAIGICKERGGGQCLYFSREMYLAFRRQNQLVELI 396

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              +E    YL + P+      +    EAL++       N+S +EF+ +AE+  +I  ++
Sbjct: 397 KRGMEAERFYLDFQPVYNCAKGKFDSCEALLRLKDENGSNVSPAEFIPLAEKRGLINGLS 456

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             ++E   R I    D +      + IN +    L+ ++   + AL  +    P R+K+ 
Sbjct: 457 WMVIEMACRFIRDHPDYSG----SLSINFSILQFLEVDMVPRIIALTQRYGVRPERLKIE 512

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E ++  + +R   ++ +L + G    LDDFGT  S LSY+  +PF+ +K + SL+ G 
Sbjct: 513 ITERIIAEDTKRVLAVMNQLTRSGFGFYLDDFGTGYSSLSYVLTLPFECIKLDKSLVDGI 572

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             EK   ++ +I+    +I    I + +  E   + +  +G D IQ  + + PL     L
Sbjct: 573 GNEKNRILVEAIVRCFHSIGVETITEGVENEGQRRIMAELGTDKIQGYYYSRPLPEKEFL 632

Query: 951 KLLKER 956
           +L++ +
Sbjct: 633 ELMRGQ 638


>gi|94502074|ref|ZP_01308578.1| predicted signal transduction protein containing sensor and EAL
           domains [Oceanobacter sp. RED65]
 gi|94425785|gb|EAT10789.1| predicted signal transduction protein containing sensor and EAL
           domains [Oceanobacter sp. RED65]
          Length = 838

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 92/443 (20%), Positives = 194/443 (43%), Gaps = 19/443 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  E +L  A  D +T +PNR +F   L   L            ++V  + +   I+  +
Sbjct: 389 KLQESMLFTATHDAITQLPNRNNFETFLQYTLRQYE-----HGVLVVCHLQRMNDIDKTM 443

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL---------KIADFA 634
           G  + +  L      +   L   ++   +             +S           I    
Sbjct: 444 GKDMSNLALHKFAMMLNIELAENNLALAIDHKEGFYAATLSASSHGFLLNPKFTNIYRTI 503

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVE 693
            +++ ++     + E E+ +     F  +      S ++++   +A+  AK         
Sbjct: 504 ESIKDAVDRTYAINEMELELEPQFAFIEFPKFGKESDKLMRQVGIALDAAKSCTSHIAAY 563

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +  +   R+++  +L  A+ +  L L + PI+    + I+G EALI+W H ++G I 
Sbjct: 564 HPDIDPYDGRRLVLMTELKRAIADDTLDLHFQPIVDTRHQNIIGAEALIRWPHNEFGLIM 623

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE   +I+A+++++++R  + +         P +F+ +NI++ +L D++  + 
Sbjct: 624 PDEFIEMAERSGLIQALSIWVIKRSLQILRRLHK--INPSLFMAVNISTFNLQDDKFIKA 681

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  L+ K+      + L  +ES +M + + +   L  L + G+ + +DDFGT  S L+YL
Sbjct: 682 LLVLLEKSSDLCRHVVLEITESQMMSDTQDALENLWSLNEQGVKIAIDDFGTGYSSLAYL 741

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P + +K +   +      ++   ++ + I MA N+  T++A+ +  E   + L  + 
Sbjct: 742 KKLPAEELKIDKEFIFDLETDKQNQVLVHTAIEMAHNLGMTVVAEGVESEHTRRILEDLN 801

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CD  Q  H A P+  +   K L 
Sbjct: 802 CDMCQGYHFARPMDVDRFAKYLA 824



 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 115/377 (30%), Gaps = 10/377 (2%)

Query: 39  SSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEV-SASSIRHRGDWAVFALANTS 97
           SS +   L +   +  +   +     A +++   +  +            W  F L N S
Sbjct: 11  SSHKQRHLVTQFDVLEDPKSELSETQALNLEDWRKINQPSLNFGYTQSTYWVKFNLHNES 70

Query: 98  DSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGA 157
              + RLI   +  L     F        +I  +        R  +    V ++ +   +
Sbjct: 71  SQDIVRLIDFTYPLLDKISLFKIADNQPELIFHSGDTYPYHQRNVDHPHFVAKVELPQQS 130

Query: 158 VVTFIMEISTPNLPQIYL--WEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRS 215
             ++++ + + +  Q  +  W+ N ++         + + IG+   +A+   + ++  R 
Sbjct: 131 EQSYLVRLQSNSPIQTEVISWDLNRFQKHYRDINASQFLYIGLVLSVALLNLLIFIYLRE 190

Query: 216 SMLIPTFAMAWVVLGYISIDFGFLS-KLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH 274
           ++ I     A  +   +S   G L   +           +            +F   +L 
Sbjct: 191 AVYITYAGYAACLGLLVSSQSGVLFEYVYPEWPIVHKWSQLVFATLTILLTTLFSLKFLR 250

Query: 275 WNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGY 334
            N   A    +     A I +L         +      +    ++    +  ++   K  
Sbjct: 251 LNTSGACKKPLQGLLSAPILVLVISPIIGYQLAIQSIVLVGLLVIPACFFMGVFVAQKNP 310

Query: 335 ERAVLLIPAWILIFIWFIGLWMAITKRLD-----NDIIQPALVGGLVLIVILIGFTVIQH 389
           +R +  + AW  + I       +    L      N+ +Q      L    + +   +   
Sbjct: 311 DRDI-FLIAWSFLIIGACIFLFSKLGILPFNGFTNNAVQIGSTLELFTFSLALARRIYIE 369

Query: 390 VLATGYFSQGIFSDGER 406
             A     Q I    +R
Sbjct: 370 REARLTAKQAIIDSNKR 386


>gi|241767972|ref|ZP_04765507.1| diguanylate phosphodiesterase [Acidovorax delafieldii 2AN]
 gi|241360824|gb|EER57689.1| diguanylate phosphodiesterase [Acidovorax delafieldii 2AN]
          Length = 341

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 155/340 (45%), Gaps = 6/340 (1%)

Query: 623 SENNSLKIADFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +  ++   A  A  +  ++A P  +    E+    S+G   +     T+  +L+ A  A+
Sbjct: 1   NLRHADGAAAVARQLIAAVAEPWRSPEGFEVVAGVSVGICMFPEHAATAQTLLQGAHAAV 60

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G      +         DR+ ++  L LA+ +  + L Y P I +    IVG E
Sbjct: 61  YGAKALGRGAWCFYTEEMTQSARDRLALESRLRLALAHGHMVLHYQPQIDIATGRIVGAE 120

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W+ P+ G I    F+ +AE   +I  +  +++    R    WR++   P + + +N
Sbjct: 121 ALVRWNDPQEGLIPPGRFIPVAEVSGIIGPLGAWVIGEACRQGQRWREEGL-PALTLAVN 179

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ +     +L     + + ++ +  S ++L  +ES +    E S   + RLR +G+ L 
Sbjct: 180 VSPRQFHLTDLVGCASSALEESGFPASLLELEITESALAERVEESLQTMRRLRDLGLRLA 239

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+ L   P D +K +   +     +    AI  +II M  +++  ++A+ 
Sbjct: 240 VDDFGTGYSSLAQLKRFPIDVLKIDQGFIRDIPQSSDDKAISAAIIAMGHSMDLRVLAEG 299

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +     +  L   GCD  Q  H + PL   +   L++ + 
Sbjct: 300 VETAEQLAFLRERGCDTFQGYHCSRPLPAEAFAALVRAQQ 339


>gi|15804073|ref|NP_290109.1| putative phosphodiesterase [Escherichia coli O157:H7 EDL933]
 gi|12518244|gb|AAG58670.1|AE005578_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 651

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SI  A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSISVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|167737918|ref|ZP_02410692.1| sensory box diguanylate cyclase/cyclic diguanylate
           phosphodiesterase [Burkholderia pseudomallei 14]
          Length = 340

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 165/333 (49%), Gaps = 11/333 (3%)

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTS------SKITSSEMLKNAELAMYHAKHR 687
           A  ++ ++  P     + + ++AS+G A +             S +L+ A+ A+  AK  
Sbjct: 1   ARQLQTAVQRPYAYDGQAVHLSASVGIAIYPDARATSKHAQHHSPLLRRADRALAQAKAA 60

Query: 688 GGNH--VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           GGN             ++R+ ++ DL   V N E  L + PI + +   +VG+EALI+W 
Sbjct: 61  GGNALAFHQPTDDPADAERLKLEADLYNGVRNGEFSLHFQPITKSLSGAVVGVEALIRWH 120

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP  G ++ + F+ +AE + +I  +  ++L+     ++SW  Q      ++ +N++ +  
Sbjct: 121 HPVHGLVAPATFIPLAESIGLINYLGNWVLKAACMQLVSWDRQGIALQ-YVAVNVSPQQF 179

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            D    + ++  I  T   P RI L  +ES++M +P  ++ LL  + ++GI   +DDFGT
Sbjct: 180 RDPRFTQSVRDAIKLTGIDPRRIVLEITESLLMHDPNHAKTLLEEVTELGIRFAVDDFGT 239

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P   +K + S +     +    AI+ +++ +A+ +E  ++A+ +  E  
Sbjct: 240 GYSSLAYLQSFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLELELVAEGVETEAQ 299

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              LT MGC++IQ   V   L  + + +  + +
Sbjct: 300 RTLLTEMGCNHIQGWLVCQALPSDELAQRFEAQ 332


>gi|187775657|ref|ZP_02797523.2| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|188024511|ref|ZP_02771954.2| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|189401808|ref|ZP_02778349.2| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4401]
 gi|189405496|ref|ZP_02822367.2| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC508]
 gi|208807687|ref|ZP_03250024.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208812960|ref|ZP_03254289.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|209400445|ref|YP_002273010.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|254795482|ref|YP_003080319.1| putative phosphodiesterase [Escherichia coli O157:H7 str. TW14359]
 gi|187771465|gb|EDU35309.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|188018390|gb|EDU56512.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|189358900|gb|EDU77319.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4401]
 gi|189379998|gb|EDU98414.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC508]
 gi|208727488|gb|EDZ77089.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208734237|gb|EDZ82924.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|209161845|gb|ACI39278.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|254594882|gb|ACT74243.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191423|gb|EFW66073.1| Protein yhjK [Escherichia coli O157:H7 str. EC1212]
 gi|326337472|gb|EGD61307.1| Protein yhjK [Escherichia coli O157:H7 str. 1044]
          Length = 662

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 231 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 285

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 286 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 345

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SI  A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 346 SERLPIERIQLRPHCSISVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 404

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 405 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 464

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 465 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 522

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 523 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 582

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 583 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 641

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 642 GFLFARPLPIEIFEESYLEEK 662


>gi|323694592|ref|ZP_08108758.1| hypothetical protein HMPREF9475_03622 [Clostridium symbiosum
           WAL-14673]
 gi|323501360|gb|EGB17256.1| hypothetical protein HMPREF9475_03622 [Clostridium symbiosum
           WAL-14673]
          Length = 424

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 172/415 (41%), Gaps = 13/415 (3%)

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           N Q   ++   +   +  +      ++ + I +++  N + G   GD ++  + + I E 
Sbjct: 6   NEQWLREKYEEVCGKNPEE----YALISLKIKRFRIFNRLFGREAGDRLVEKVYKAISEW 61

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFA 661
           +K  + +AR+S + F +++    +  +I  + I     +  MP N    ++ +   +G  
Sbjct: 62  IKEDEYVARISVDGFSMLVKLSKDYDEIFHYLIDFNDHVRDMPYNEGTGKVYMG--MGIY 119

Query: 662 SWTSSKITSSEMLKNAELAMYH----AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
                         NA++        A       V               ++ L  A+EN
Sbjct: 120 LLPEKPADYFTAQYNADICRSECPETAYRNSHMEVYGMTYQDKNLTSYDFEQMLQPAMEN 179

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L   P + L   E+   EAL++W +P+ G I   EF+       +I  ++L++ E+
Sbjct: 180 EEFKLYLQPKVDLKTGEVHEAEALVRWINPERGMIPVGEFLPELVRNGLISDLDLYLFEK 239

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           + R I  W D      I I +N++S         +  + + +K       I+    ES+V
Sbjct: 240 VCRYINKWIDLYGK-KIRISVNLSSNMFNYRYFLDHYKEVYNKVPCPKDCIEFELLESIV 298

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRI 896
           +   E    ++ +LR+ G S  LDDFG+  S  S L     +T+K + SL    S  +  
Sbjct: 299 LNQVELVSRVVKQLREFGFSCALDDFGSGYSSFSVLTNADLNTLKIDRSLFQNESDTRER 358

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++R I+  AK +E  +IA+ +     +  L  +GCDYIQ      P+      +
Sbjct: 359 ILVRHIVETAKELEMKVIAEGVETRGYVDILKELGCDYIQGFVFYKPMPAEEFEQ 413


>gi|167755282|ref|ZP_02427409.1| hypothetical protein CLORAM_00787 [Clostridium ramosum DSM 1402]
 gi|167705332|gb|EDS19911.1| hypothetical protein CLORAM_00787 [Clostridium ramosum DSM 1402]
          Length = 1139

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 184/435 (42%), Gaps = 22/435 (5%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            ++  E    N + DNL+G+ NR SF   L+       +       V++ DI+  K+IN  
Sbjct: 725  RRLYEKTQYNLYHDNLSGLLNRNSFTQFLSYENSAVYSQG-----VILADINGLKEINRD 779

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD ++  ++  +       + + RLSG+ F II+        I          + 
Sbjct: 780  FGHYHGDKIITIISSIMNSYF-PSEKIFRLSGDEFIIIVNDLEYKQFIEATKQMEDTLL- 837

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                          S+G+  W+   +  ++++  AE  M   K     + E         
Sbjct: 838  -------GSTPNGVSLGYT-WSEDNMDINDLIHQAEELMMINKQ---IYYERADTYKKHY 886

Query: 703  DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                ++  L    +  +  +   P   +   ++V  EAL++ ++P  G I  ++F+   E
Sbjct: 887  SPKKLENLL-KCFKAKQFVVYLQPKFDIDQNKVVSAEALVRLEYPGHGLIMPNKFIPTLE 945

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            +  M + ++ +M E+I   +  W+ +     I I +NI+   LL+++    ++ + +K  
Sbjct: 946  KERMTRYLDFYMFEQICEILERWQKEGKEL-IPISVNISRLTLLESDFTNSLKRIKNKYN 1004

Query: 823  YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               + I L  +ES+   +      +  R++ +G +++LDDFG K + +S L  + FD +K
Sbjct: 1005 IPNNFITLEITESIGNIDRSIIATISKRIKDLGFNISLDDFGAKYANMSLLSTLNFDELK 1064

Query: 883  FNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             + S++           IL  II M K I    +A+ +  E  I+ L  +GC+ IQ  + 
Sbjct: 1065 IDKSMIDTLVNNDKCQTILHHIIEMCKKINVACVAEGVETEKQIELLVCLGCNIIQGFYY 1124

Query: 941  ASPLGFNSILKLLKE 955
            + P+          +
Sbjct: 1125 SKPISLQEFEDKYHQ 1139



 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 119/298 (39%), Gaps = 17/298 (5%)

Query: 456 IHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDI 509
           +H +D++ F   L               +  E+R   A  +  W+   I  +       +
Sbjct: 188 VHPDDKNKFYQELHPHRLKKLFEQGITEVYCEYRSLNATQKQGWVSTTIHLLHVGETNKL 247

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             ++    DI ++K     +L  +  D LT + NR +F   +   L+      +    ++
Sbjct: 248 FGFV-YVKDINDKKIHELELLRQSQSDPLTKLYNRTAFGQIVNEYLNKKRESSS---ALL 303

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +IDID +K IND LG + GD VL  +  ++  +     I+ R  G+ F I +    +   
Sbjct: 304 LIDIDNFKNINDNLGHSFGDTVLCEIAHKLTNIFNNKAIIGRYGGDEFIIFIKDIPSKKY 363

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +   A  + + + +  +   +E T+++SIG         T  E+ +  + A+Y AK  G 
Sbjct: 364 VYHKASIILEELHLYYSSNYQEYTISSSIGITFSPDDGKTLHELFEQTDSALYRAKKLGK 423

Query: 690 NHVESFRVSSFRSDRVM-------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
           +   +F  S      V        + ++L   V  S L       +     EI G+EA
Sbjct: 424 SQYFAFNDSYQDITPVTNYISKGWLIDELDEIVYVSSLDTYELLYLNRKGREITGIEA 481


>gi|15833663|ref|NP_312436.1| phosphodiesterase [Escherichia coli O157:H7 str. Sakai]
 gi|13363883|dbj|BAB37832.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209755430|gb|ACI76027.1| hypothetical protein ECs4409 [Escherichia coli]
 gi|209755432|gb|ACI76028.1| hypothetical protein ECs4409 [Escherichia coli]
 gi|209755436|gb|ACI76030.1| hypothetical protein ECs4409 [Escherichia coli]
          Length = 651

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SI  A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSISVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|168759613|ref|ZP_02784620.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4501]
 gi|168765937|ref|ZP_02790944.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|168779673|ref|ZP_02804680.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|168785395|ref|ZP_02810402.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|195935057|ref|ZP_03080439.1| putative phosphodiesterase [Escherichia coli O157:H7 str. EC4024]
 gi|208821829|ref|ZP_03262149.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|217325280|ref|ZP_03441364.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14588]
 gi|261224844|ref|ZP_05939125.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254259|ref|ZP_05946792.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189002491|gb|EDU71477.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|189364542|gb|EDU82961.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|189369842|gb|EDU88258.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4501]
 gi|189374651|gb|EDU93067.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|208741952|gb|EDZ89634.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|217321501|gb|EEC29925.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14588]
 gi|320639845|gb|EFX09439.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. G5101]
 gi|326339998|gb|EGD63805.1| Protein yhjK [Escherichia coli O157:H7 str. 1125]
          Length = 649

 Score =  327 bits (839), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 194/441 (43%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 218 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 272

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I    +           +   +
Sbjct: 273 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVHEPWHAITLGQQVLTIM 332

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SI  A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 333 SERLPIERIQLRPHCSISVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 391

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 392 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 451

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N++   L+   +   M  L++
Sbjct: 452 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSVLQLMHPNMVADMLELLT 509

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 510 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 569

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 570 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 628

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 629 GFLFARPLPIEIFEESYLEEK 649


>gi|332140816|ref|YP_004426554.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550838|gb|AEA97556.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 858

 Score =  327 bits (839), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 203/555 (36%), Gaps = 24/555 (4%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILD 469
           +     IV   D     ++    +  +LG     + G  ++     +  +D  ++   LD
Sbjct: 301 LNSVDSIVLSIDENGTILSANECVTKVLGFEPDDLIGQDVKLIATKVQNSDIPSYFLNLD 360

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           + +            +R  + +     +           +   +    D+T Q+  +E  
Sbjct: 361 AGLKICADGGAVRECLRHKNGKRISCEVSFTTCIVHEQKL--VVATIRDVTTQRYEIEHF 418

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV-IDIDKYKKINDVLGIAVG 588
              A  D +TG+PN   F   L               +V + + +   K+  D  G    
Sbjct: 419 KQLALTDAVTGLPNLNKFEHYLAE--KAHEDKSAKPFSVFMRVSVRNIKEYEDAYGEPTI 476

Query: 589 DDVLVSLTRRIGELLK----FPDILARLSGNRFGIILISENNSL-----KIADFAIAMRK 639
           D +L  L  R     +        + +     F + L  + N           +A  +++
Sbjct: 477 DYLLRILASRFVRTFETNNSGNASVFKCDSANFFLHLHQDFNEEGQSINAAKAYAQLIQE 536

Query: 640 SIAMPINLLEREITV---TASIGFASWTSSKITSSEMLKNAELA-MYHAKHRGGNHVESF 695
            +  PI L    +T+   T S        S     E+L    L  +  +      H    
Sbjct: 537 QVLAPITLHNSLLTIETQTISCTVPIKYFSFKKIRELLSRKPLREINDSNSASLTHDYFH 596

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +S       IK  L  A+ N+EL++   P        ++  E L++W HP  G +  S
Sbjct: 597 INASDIERYNYIKHSLSRAISNNELFVQLQPQYDGQ-GSVISSEVLLRWQHPHLGMVKPS 655

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAEE   I    L++     R +   + Q       + +NI++K L   +      
Sbjct: 656 EFIPIAEENEFIAEFGLWVCNEACRLLSDCQSQHIDT--KLSVNISAKHLARADFVSKFV 713

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++++   S S++ L  +E  ++      +  +  L + G SL++DDFG   S L+YL  
Sbjct: 714 GIVNRWQISHSKLTLELTEGALIRGVSIIQYRVRELAEQGFSLSIDDFGIGDSNLNYLQD 773

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P   +K +   +     ++++  ++ SI  MAK +    +A+ I     + +    GC 
Sbjct: 774 LPIKELKVDRVFIEAMEASQQKTLLVTSICNMAKALHLGTVAEGIETTQQLDQAKACGCS 833

Query: 934 YIQDSHVASPLGFNS 948
             Q  ++  P+    
Sbjct: 834 AFQGYYLDKPMNVED 848


>gi|73538174|ref|YP_298541.1| PAS:GGDEF [Ralstonia eutropha JMP134]
 gi|72121511|gb|AAZ63697.1| PAS:GGDEF [Ralstonia eutropha JMP134]
          Length = 707

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 113/465 (24%), Positives = 197/465 (42%), Gaps = 16/465 (3%)

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT-------GY 395
            W    +  +     +   L        +   +V  +++     I + LA          
Sbjct: 203 GWKSFAVLPLHRGDRVIGALSLYGSLAYVFDAVVRDLLMDMVRNIDYALANLDRETERQR 262

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
            ++ +    +R    +    + V   D   + +        ++G  + S+    R++   
Sbjct: 263 ANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAAGLAMIG--ADSLAQAQRHYTEV 320

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           I    RD F  +    +    G L++E        Q  W+     PM  ++G + R + +
Sbjct: 321 ILPEYRDAFAALHARVMSGESGLLEFEIVGLR--GQRRWLETHATPMRGADGCVTRLLAV 378

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D T++K++ + I   A  D LTG+PNR+   +R       +   D     +M +D+D 
Sbjct: 379 TRDTTDRKQASDRIQHLAHYDALTGLPNRRLVENRARQAFSQA--SDGHTLAIMFLDLDL 436

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND LG + GD  L+ L RR+  LL   D+LAR  G+ F I+L            A 
Sbjct: 437 FKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFGGDEFLILLPDACERTAAQT-AQ 495

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +IA P +L   ++TV+ SIG A +         + KNA+ AMYH K +G      F
Sbjct: 496 KVLDTIAEPYHLGPYDLTVSGSIGIALYPRDGTDFESLSKNADTAMYHVKKQGRRGYCFF 555

Query: 696 RVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      +K    L  A+  ++ +L Y P + + D +++G+EAL++W+HP+ G +S
Sbjct: 556 TPQMQAGMVRYLKVVGALRQALPRNQFHLHYQPQMSMDDGKLIGVEALLRWNHPELGAVS 615

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            +EF+ +AEE   I  I  ++L   AR    W      P     +
Sbjct: 616 PAEFIPVAEESGAILPIGEWVLRHAARQARIWVQAGYTPVFHGSV 660


>gi|258621292|ref|ZP_05716326.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258586680|gb|EEW11395.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 641

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 197/450 (43%), Gaps = 26/450 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR      +   L  +         ++++D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTQLKNRNF----IVKTLKKNHLGKEEAIALVLLDLNRFKELNDTI 244

Query: 584 GIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+ +   +      F    AR+  + F ++L   +       F   +   + 
Sbjct: 245 GYAFGDQLLIKIASLLAIRCQPFGYECARIGADEFAVLLHPCSG--NAEFFIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASW--TSSKIT-----SSEMLKNAELAMYHAKH--RGGNHVE 693
             +   +    ++ ++G  ++    +        +S +L NA+LA++ AK    G     
Sbjct: 303 KLVKDNDPTKRLSIAMGVVTYQNPDTGQANSALRASSLLNNADLALHIAKKTSDGQVVYY 362

Query: 694 SFRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +  +    + + ++ E L         + LY+ Y PI+    E + G EAL++W H ++ 
Sbjct: 363 TREIECAYNKKRILAEQLQQLLSDPNQTSLYVCYQPILSCHSERL-GCEALLRWQHDEFD 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I     + IAEE  + K +  +++E++       W +  +     + IN++   L D  
Sbjct: 422 LIDPQYLIEIAEEYGLGKQLGTWIMEQVYLALKKEWHEYNHRLD--VSINLS-NALFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   ++ +        + I L  +E++ + +   S  ++ +L K+ +   LDDFGT  S 
Sbjct: 479 LPTLIKDIFDHQESFLNSIILELTETMTIEDFAHSLAIINQLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ +A  +E T++A+ +     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLAHQLEMTVVAEGVEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++G D  Q  + + P+         +  F
Sbjct: 599 KQLGVDEFQGYYFSYPITKEEFATFCEHHF 628


>gi|323487085|ref|ZP_08092393.1| hypothetical protein HMPREF9474_04144 [Clostridium symbiosum
           WAL-14163]
 gi|323399586|gb|EGA91976.1| hypothetical protein HMPREF9474_04144 [Clostridium symbiosum
           WAL-14163]
          Length = 424

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 172/415 (41%), Gaps = 13/415 (3%)

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           N Q   ++   +   +  +      ++ + I +++  N + G   GD ++  + + I E 
Sbjct: 6   NEQWLREKYEEVCGKNPEE----YALISLKIKRFRIFNRLFGREAGDRLVEKVYKAISEW 61

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFA 661
           +K  + +AR+S + F +++    +  +I  + I     +  MP N    ++ +   +G  
Sbjct: 62  IKEDEYVARISVDGFSMLVKLSKDYDEIFHYLIDFNAHVRDMPYNEGTGKVYMG--MGIY 119

Query: 662 SWTSSKITSSEMLKNAELAMYH----AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
                         NA++        A       V               ++ L  A+EN
Sbjct: 120 LLPEKPADYFTAQYNADICRSECPETAYRNSHMEVYGMTYQDKNLTSYDFEQMLQPAMEN 179

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  L   P + L   E+   EAL++W +P+ G I   EF+       +I  ++L++ E+
Sbjct: 180 EEFKLYLQPKVDLKTGEVHEAEALVRWINPERGMIPVGEFLPELVRNGLISDLDLYLFEK 239

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           + R I  W D      I I +N++S         +  + + +K       I+    ES+V
Sbjct: 240 VCRYINKWIDLYGK-KIRISVNLSSNMFNYRYFLDHYKEVYNKVPCPKDCIEFELLESIV 298

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRI 896
           +   E    ++ +LR+ G S  LDDFG+  S  S L     +T+K + SL    S  +  
Sbjct: 299 LNQVELVSRVVKQLREFGFSCALDDFGSGYSSFSVLTNADLNTLKIDRSLFQNESDTRER 358

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            ++R I+  AK +E  +IA+ +     +  L  +GCDYIQ      P+      +
Sbjct: 359 ILVRHIVETAKELEMKVIAEGVETRGYVDILKELGCDYIQGFVFYKPMPAEEFEQ 413


>gi|115265513|dbj|BAF32775.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. actinidiae]
 gi|330965244|gb|EGH65504.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 607

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 101/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   L  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLFNRSRLQEDIHEALASSVDYQ-----LVVMDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  R+  LL     L ++   RFG +L  +            + +    P+     
Sbjct: 223 LVTAIKERMESLLPQTCPLYKVGPTRFGFLLAGDRPPEH---LFRTILEDFETPVECHGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +         + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRDPNEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTSAVHSHDQLRLVYQPRIDLETGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ +    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFH--FRIAINVTPEDLTGPAFTDRMVRLLGQHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
           +++L  L
Sbjct: 578 DAVLGWL 584


>gi|330969592|gb|EGH69658.1| EAL:GAF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 607

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   +  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQAVASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  R+  LL     L ++S  RFG +L  +            + K    P+     
Sbjct: 223 LVTAIKGRLECLLPPTCSLYKVSPTRFGFLLAGDRTPEH---LFRTILKDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIK 708
            + +   +G  +     +   + ++    A   A+ R  G    E    ++ +    ++ 
Sbjct: 280 PVQMQVGLGVVTLNQGAVEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
                   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTRAVYAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+      P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
            ++L  +
Sbjct: 578 EALLNWI 584


>gi|331679607|ref|ZP_08380277.1| protein YhjK [Escherichia coli H591]
 gi|331072779|gb|EGI44104.1| protein YhjK [Escherichia coli H591]
          Length = 651

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   ++ L  ++    T       +M+I  +  +    
Sbjct: 220 LQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTT-----ALMIITCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL  A  + +L++L  ++  +L    ILA++SG  F +I                +   +
Sbjct: 275 VLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIM 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  + +   ++    SIG A +    +T+ ++   A  A + A+H+G N ++ F      
Sbjct: 335 SERLPIERIQLRPHCSIGVAMFYGD-LTAEQLYSRAISAAFTARHKGKNQIQFFDPQQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A+EN +  +   P + +   ++V  E L++   P          + 
Sbjct: 394 AAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLID 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++  M  + + +N+++  L+   +   M  L++
Sbjct: 454 RIECCGLMVTVGHWVLEESCRLLAAWQERGIM--LPLSVNLSALQLMHPNMVADMLELLT 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVAESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           P D +K +   + G   +  +++ +II +A+++   +IA+ +  E     L + G    Q
Sbjct: 572 PIDVLKIDKMFVEGL-PEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQ 630

Query: 937 DSHVASPLGFNSILK-LLKER 956
               A PL      +  L+E+
Sbjct: 631 GFLFARPLPIEIFEESYLEEK 651


>gi|291537233|emb|CBL10345.1| FOG: EAL domain [Roseburia intestinalis M50/1]
          Length = 626

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 189/467 (40%), Gaps = 21/467 (4%)

Query: 498 RIRPMSNSNGDILRYIGIANDIT------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           R++ + ++   ++  I +   ++        ++S + ++  A+QD +T         D  
Sbjct: 169 RMQVVMDAINSLMVIILVVISVSVGVYIYSWRQSKKELMSLAYQDPVT-------LGDNF 221

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
                 + +  +    ++ +D+  +K IN   G+  GD+VL  +           ++ A 
Sbjct: 222 AAFKKKAKSKKDGVGWLIAMDVTDFKLINSTCGVKKGDEVLRVIWEIFETETGENELAAH 281

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           ++ +RF +  + EN           +RK   +P  L    +     I             
Sbjct: 282 VNADRFILFWMDENQENIKQRLEHVIRKIEEIPERLEIPNLFPVFGIFHTIVLDE---ID 338

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +  NA  A +  K R   H   +   +     +   ++E    A+EN E  + Y P   
Sbjct: 339 PLYGNAVQAKHQIKGRRDRHYIFYDELNHESIQENRELEEHFETALENEEFEIWYQPKYS 398

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
               ++VG EAL++W       I   +F+ + E    I  ++ ++   + R    W+ Q 
Sbjct: 399 AHSRKLVGAEALVRWRRADGALIPPLKFIPLFERNGNIIRLDEYVFRAVCRQQKEWQKQG 458

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + +NI+   L  + + E  +++I         I+L  +ES  + N E    LL 
Sbjct: 459 QKM-LPVSVNISRVSLYYSSVVEKYESIIRSFDLDSKYIQLEITESATIDNNEIF-NLLE 516

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKN 908
           +    G  + LDDFG+  S L+ L  + FDT+K + SL+    +     +L SI  +A++
Sbjct: 517 QFHTAGFKILLDDFGSGYSYLAALNRMHFDTIKLDKSLVDYIGDDNGEKLLNSITKLAQS 576

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               I A+ +     +  L  + CD IQ  + + PL      + LKE
Sbjct: 577 FGMEITAEGVETVEQLMFLCNLDCDDIQGYYFSRPLPVKEYEECLKE 623


>gi|327484475|gb|AEA78882.1| GGDEF family protein [Vibrio cholerae LMA3894-4]
          Length = 610

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 158 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 213

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 214 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 271

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 272 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 331

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 332 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 390

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 391 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 447

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 448 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 507

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 508 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 567

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 568 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 603


>gi|152964216|ref|YP_001360000.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Kineococcus
           radiotolerans SRS30216]
 gi|151358733|gb|ABS01736.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Kineococcus
           radiotolerans SRS30216]
          Length = 964

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 93/432 (21%), Positives = 184/432 (42%), Gaps = 18/432 (4%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A +D  + + NR   L+     L+    D   R  V V+  D  + +  VLG A  ++
Sbjct: 173 HRARRDGGSDLLNRTGLLESCAQRLER-DEDLGERVAVNVVHFDDLRDLRPVLGPAAAEE 231

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPI 645
           VL    RR         ++AR+  +   ++   E ++         +   A+R+ +   +
Sbjct: 232 VLAECARR--AAALPGSVVARIDLDSLAVVQPVELDASGEPVRTAVEEGRALRELLRAHV 289

Query: 646 NLL------EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +L          +    S+G A          ++L  A++A   A         +   ++
Sbjct: 290 DLAADGPGQGLRVRPGVSVGVARAPEHGRDVEDLLALADVAAVRAGAEQHRVAVTGGGAA 349

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           F  D + +  +L  AVE+ +L + Y  ++       VG+EAL++W HP+ G +    F+ 
Sbjct: 350 FDVDALRLHAELPAAVEDGQLRVHYQRLVTAGTGRTVGVEALVRWQHPERGLLGPGAFVP 409

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE    I  + L++L   A    +WR   +     + +N++   L D  L + ++  ++
Sbjct: 410 LAERSQAIVGLTLWVLRTAAAQCGAWRAAGHDVG--VSVNVSPVVLADPSLLDAVRRAVA 467

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   + L  +ES ++G+P     +L  LR+ G  ++LDDFGT  + L+ L     D
Sbjct: 468 DNDLGRGTLTLEVTESALLGDPAGVPAVLAALREAGARISLDDFGTGYTSLTMLRQFEVD 527

Query: 880 TVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +          AI+R+++ +A  +   ++A+ +        +  +G D +Q 
Sbjct: 528 ELKIDRSFVAAAPGAPADAAIVRALVDLAHRLSLDVVAEGVEDARTADLVRSLGADVLQG 587

Query: 938 SHVASPLGFNSI 949
            H A P+    +
Sbjct: 588 FHFARPIPAEQV 599


>gi|160943560|ref|ZP_02090793.1| hypothetical protein FAEPRAM212_01053 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445239|gb|EDP22242.1| hypothetical protein FAEPRAM212_01053 [Faecalibacterium prausnitzii
           M21/2]
          Length = 888

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 179/416 (43%), Gaps = 18/416 (4%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +FL  L T L            V  +DI  +K  N++ G   GD +L ++   +    + 
Sbjct: 27  AFLQALHTFLT---AHQGTEWAVAAVDIQHFKLYNELYGTEKGDALLETVANCLLGYSRQ 83

Query: 606 PDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               +     + F + L  E            +  ++   +    +++T    +G     
Sbjct: 84  TGYPVGYFGNDDFFLCLPDEKAEQTA------VLATLQACMAAGRQDVTFFVVMGVCPVQ 137

Query: 665 SS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
           ++    ++ +   A++A       G  H     + +   ++ ++  +L  A++N E    
Sbjct: 138 ANPGADAATLCNYAQIAGVTT-DSGYLHRFEPTMLNELKEQQLLLGELERALDNHEFCFF 196

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
             P    +   IVG+EAL++W+HP  G +  +EFM + E   ++  ++ ++ E + + + 
Sbjct: 197 LQPKCNSITRAIVGMEALVRWNHPTRGCVPPAEFMPLLERTGLVTRLDQYIWESVCQTLQ 256

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W++  +   + + +N++ +D+L+ ++ +    L+ K    P  +    +E++V  + + 
Sbjct: 257 KWQESGSNL-VPVSVNVSVQDILNLDVPQIFADLVEKYKLEPKLLLAEITETMVAEDTQM 315

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----IL 899
               +  L + G ++ +DDFG++ S L+ L     D +K +  L+    ++  +    I+
Sbjct: 316 VENAIQGLHRKGFAVMMDDFGSEYSSLNMLKDTNVDAIKLDMKLI-DMNQENRSKGVQIV 374

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            S++ MA  +   IIA+ +     +  L    C Y Q  +   P+   +  KLL +
Sbjct: 375 ESVVDMAHRLNLPIIAEGVETPEQVSMLQAADCLYSQGYYFFKPMPVENAEKLLAD 430



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 90/281 (32%), Gaps = 25/281 (8%)

Query: 454 PYIHINDRDNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +H  D D F        L S + +      Y +R      Q+ W+   + P       
Sbjct: 516 KIVHEEDTDLFLEQTDLEALRSVLYHATAPEFYRYR-ENVSGQYIWVTTEVLPCRGCCAQ 574

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
                 +  +  +  +  E +  +   D LTG+ NR  +   L  +      +      V
Sbjct: 575 NPWATVLVRNDAQADQLSEELDFSYSHDTLTGLANRSRYEADLREL-----PNSGYESVV 629

Query: 569 M-VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
              ID+    ++N+ LG   GD +L  L     +       + R+  + F I+  +E   
Sbjct: 630 CTYIDVVGMHEVNEHLGHRSGDTLLCCLANAARKFFA-TSRVYRIGSDEFVILTPNEP-P 687

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +   A  MR  +       E++  ++  I     T+      E +  AE AM   +  
Sbjct: 688 YSVWSTADRMRAFLK------EKDYAISVGIQQ---TADLRHLDEAVAKAEAAMRQDRQA 738

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              +  + R          ++  L    +      V  P  
Sbjct: 739 --YYDHNGRARQLEGLNEKMERTLQEKRDAEHFLKVLAPKY 777


>gi|16329355|ref|NP_440083.1| hypothetical protein slr1104 [Synechocystis sp. PCC 6803]
 gi|1651836|dbj|BAA16763.1| slr1104 [Synechocystis sp. PCC 6803]
          Length = 613

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 186/458 (40%), Gaps = 28/458 (6%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E     ++ D  T +PN+  FL+ L   L  +    + +  V++  I+ +  +    G
Sbjct: 154 NDETFHEQSYLDTATDLPNQTLFLEYLNIALSNARRH-HAQVGVLLCQINNWSDLKRKRG 212

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AV +  L    +++   L+  DI++R   + F  ++    ++  +   A  + K +  P
Sbjct: 213 DAVANAFLQEAGQKLKSNLRNGDIVSRWDKDEFIFLVSKVQDTSSLLGIAQRLMKPVLAP 272

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKN-------------------AELAMYHAK 685
           +    R      + G A +       ++++ +                   A+  +  A 
Sbjct: 273 VTAGGRPFQPEITYGVALYPVDGEQVNDLIGHIRENLQQLLPQPTNPGSGEADDHIETAV 332

Query: 686 --HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
               G          S +    ++++ L  A+E  EL L Y P I    + I  +EA I+
Sbjct: 333 DVRIGAPQPVPGLSDSDQKRLAIVEKRLLRALEQHELELYYQPQINWRKKTIEAMEAFIR 392

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W HP+ G +   +F+  +++   +  +  ++LE   +  + W+ Q    P  + +NI+ K
Sbjct: 393 WQHPQKGLLPPGQFLPWSDQTEFMVPLTRWILETACQQNVLWQQQL-QTPFLVSVNISEK 451

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
                 L   +   I+        ++L   ES VM +   ++ ++  L   G+  +LDDF
Sbjct: 452 QFYHPLLKNMVMEAIAMAKMETHYLELEIQESTVMKDFGLAQQIITNLHNYGVGFSLDDF 511

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-----RIAILRSIIPMAKNIETTIIAKDI 918
           GT    L  L  +PF  +K + SL     E+      + ++ ++I + K     ++A+ +
Sbjct: 512 GTDYMSLRCLQDLPFQKLKIDKSLTAQLLEQTDNVPNLTMMETLINLGKTFNLKVVAEGV 571

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             E  I  L  + C ++Q    + PL   +    L + 
Sbjct: 572 EQEEQINILDSLNCFFMQGYCFSEPLNILAANSFLHKY 609


>gi|309778254|ref|ZP_07673184.1| putative two-component response regulator [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308913981|gb|EFP59791.1| putative two-component response regulator [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 729

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 185/436 (42%), Gaps = 22/436 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K   + +L  ++ D+LTG+ NR  +L  L  +   +     +   ++ +DI+  K IN
Sbjct: 305 EKKNLNDRLLHYSYYDDLTGVYNRNRYLQDLKQLNGKA-----VSLGIVYMDINGLKDIN 359

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG   GD VL      + ++      + R+ G+ F + L +      +    I  +  
Sbjct: 360 DHLGHTYGDKVLSEGASILKKVF-DTASIYRIGGDEFVVFLQAVEEQTFLQQVEILKQAI 418

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSS 699
           +               +IG+     +    S+ + +A+  MY  K +    +  S R   
Sbjct: 419 V--------GSANCKGAIGYIWTP-TCQNLSDKITDADEYMYQDKMQYYRKNPNSNRYRC 469

Query: 700 FRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                + + +   L  A+E  +  +   P +    +E++G EALI++       I  +EF
Sbjct: 470 CNDTVLQLADRSILMRALEEQQFEVYLQPKVNFK-KELIGGEALIRYHDENGVLIMPNEF 528

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   EE   I+ ++ F  E++ R +  WR +       + +N +   L   +    ++ +
Sbjct: 529 IPSLEEARTIRYVDFFAFEQVCRLLCRWRKEGRRLT-PLSVNFSRYTLRMADFLGELERI 587

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +K       +++   E+    + E   +++ R+++ G ++++DDFG + S ++      
Sbjct: 588 WNKYQVPKKYLEIEIIENDESLDNEFLIMIMERIKRQGYAISIDDFGARYSNMALFINAQ 647

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S+M       +   ++ S++ +  N+   +I + +        L ++ CD +
Sbjct: 648 LDTLKLDRSMMQDLQNNRRSQMLISSLVQICHNLNMQLIVEGVETREQFDILKQLDCDGL 707

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P+  +   +
Sbjct: 708 QGYLIDRPIPIHDFEQ 723


>gi|157737775|ref|YP_001490459.1| EAL/PAS/GGDEF domain-containing protein [Arcobacter butzleri
           RM4018]
 gi|157699629|gb|ABV67789.1| EAL/PAS/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 615

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 103/529 (19%), Positives = 212/529 (40%), Gaps = 33/529 (6%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           D+  +          +       + G   + +      D + F+ + ++    +      
Sbjct: 98  DLKGNITYVNDKFCEVSLYNYEEVIGKPHSIVRG--EEDDEIFQQLWENIKNKKA--WYG 153

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             + R  + +F+W+ I IRP+ N   +I+ YI I ++IT      E +  N   D+LT I
Sbjct: 154 VLKNRKKNGEFYWVDINIRPILNEKNEIIEYIAIRHEITNLVLKTEELKRNLRLDSLTNI 213

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR   ++ +           ++ P + ++DI  +  +ND  G   GD+VL  + R+I E
Sbjct: 214 GNRYKLIEDV---------SKSVNPCISILDIVSFSDVNDFFGYKTGDNVLKIVARKIEE 264

Query: 602 LLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
           LL       + R   + F I+  +E+    I +     +    +PI +  RE+ V  S  
Sbjct: 265 LLIDKENYKVYRDHSDTFCIVAQNEDRDKFIKNIDEISKTIAKVPIVIKSRELYVQLS-- 322

Query: 660 FASWTSSKITSSEMLKNAEL--AMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
              +  S  +   +L+ A +     HA      + ++  +       +     +  A++ 
Sbjct: 323 ---YVFSFESKENLLETANIIKRYSHANKNIIIYDKALELEKDYEKNIFWTLKIKKALDE 379

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            ++   + PI  L   +I   EAL++        IS   F+ I+++      +   M+++
Sbjct: 380 DKIVPYFQPIYNLKTSKIEKYEALVRLIDGNN-VISPYYFLDISKKSKQYLQLTKTMIQK 438

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
                    D          IN+  +D+    +   +  L+ +      R+     ES  
Sbjct: 439 TF-------DYFRDKDFEFSINLTFEDIKSEYISSFIIELLKEYKI-GHRVVFEIVESEE 490

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKR 895
           + N  +       +R+ G  + +DDFG+  S   YL  +  D +K +GSL+      +  
Sbjct: 491 IDNFRKINEFFVTIREYGCKIAIDDFGSGYSNFEYLAKLNVDYIKIDGSLIKDILINKSS 550

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             I+  ++  AK  +   IA+ +  +  + ++  +G DY+Q  ++  P+
Sbjct: 551 QNIVSMLVNFAKGQKVKTIAEFVSNKDILNKVRELGIDYVQGYYIKEPI 599


>gi|313895278|ref|ZP_07828835.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976173|gb|EFR41631.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 708

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 179/430 (41%), Gaps = 19/430 (4%)

Query: 534 FQD--NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             D   +TG+ N   F+  ++            + T +  DI+ +K  N   G + G+  
Sbjct: 7   NYDRCQVTGLLNMMQFMRHVS---VRMQEGGAGKLTFLYFDIENFKSFNQRYGFSQGNQF 63

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L  +   + E     D+LAR + + F +          IA     + + +     L    
Sbjct: 64  LRYMADLLRETF-EEDLLARFNDDHFAV----ATGREDIAACIQYIHERVRA-YELG--- 114

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           + +    G    +      + ++  A++A    K         F  +   +      I  
Sbjct: 115 LAMEIKAGIYHPSEDVRDIALIMDRAKIACNSIKKTYDLTWAEFDPTMEENINFRSYIIS 174

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
               A+    + + Y P IR M  EI G+EAL +W  P  G I+   F+ + E+  +   
Sbjct: 175 SFQEAMAQGHIEVFYQPEIRTMTREICGVEALARWRDPIHGMIAPGTFVPVLEDAHLSPQ 234

Query: 770 INLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           ++L+++E++ +DI+  R        + + +NI+  D    ++ + ++ +  +     + +
Sbjct: 235 LDLYIVEQVCKDILLTRSNIPDWEQLRVSVNISRADFRLLDVVQAVEDIRMRYGIERTML 294

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E V+  + +  +  + R R  G  + +DDFG+  S L+ +    FD +K + + +
Sbjct: 295 NIEVTEGVLNDDEKFLQSEIARFRATGYEVWMDDFGSGYSSLNNIKDYVFDVLKIDMAFL 354

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +  K   ++RSI+ MAK I    +A+ +  E   + L  +GC+ +Q    + P+  
Sbjct: 355 RSFETNPKTRVVVRSIVNMAKEIGMHTLAEGVETEEQFEFLCEIGCEKVQGFLFSPPIPI 414

Query: 947 NSILKLLKER 956
             ++   ++R
Sbjct: 415 GKMVAYCQKR 424


>gi|146307178|ref|YP_001187643.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145575379|gb|ABP84911.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 1072

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 98/440 (22%), Positives = 174/440 (39%), Gaps = 19/440 (4%)

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
               DI  +      +      D LTG+ NR++F   L   L   +         +++ +D
Sbjct: 639  TLQDIVGR--LYREVAHARSHDELTGLHNRRAFESALAQSLASRSRH-----AFLMLHLD 691

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++  IN   G   GD  L  ++  +   L     LAR+ G  F  +L   N +       
Sbjct: 692  QFALINTHSGPHAGDACLGRVSELLRRWLPQASCLARVGGVDFAAVLPGCNEAQAADLAE 751

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
               R+  +       R+  +T S+G           + +    + A   AK  G N V  
Sbjct: 752  QVRREVESEGFVWETRKHGITLSVGVVEAAQRH-DVANLFCELQSACNAAKEAGRNRVHC 810

Query: 695  FRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWG 750
            F ++S  S    + I   +   VE  +L L    I     +  E+   E L+   +    
Sbjct: 811  FSMASDDSRIGLLAIAARVDDIVEREDLALRVQQIAPTAGQSSELPHYELLLVMQNE--- 867

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             +   +F+  AE    +  ++ ++L  I   +    D        + IN++   L D++L
Sbjct: 868  -LQLQDFIAAAERYHRMNKVDRWVLRHIFAVLDRHPDLWGRCSA-LSINLSGSSLNDDKL 925

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +++L  +    P RI    +E+  + N  ++  L+  L++ G S ++DDFG   S  
Sbjct: 926  LGFIESLFERYRVDPRRICFELTETAAVSNLAKTADLVRHLQRAGCSFSIDDFGVGFSSY 985

Query: 871  SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             YL  +P D VK +GS +     +   +A++RSI  +A  +    IA+ +        L 
Sbjct: 986  DYLKRLPVDYVKIDGSFVREIERSSSDLAMVRSINEIAHALGRQTIAEYVETPAIRARLL 1045

Query: 929  RMGCDYIQDSHVASPLGFNS 948
             MG DY+Q   V  P+    
Sbjct: 1046 EMGVDYVQGYGVQKPVSLED 1065


>gi|229515318|ref|ZP_04404778.1| GGDEF family protein [Vibrio cholerae TMA 21]
 gi|229348023|gb|EEO12982.1| GGDEF family protein [Vibrio cholerae TMA 21]
          Length = 641

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 192/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 244

Query: 584 GIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   +      F    AR+  + F ++L     +     F   +   + 
Sbjct: 245 GYAFGDQLLINIAELLTQRCRSFGYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 303 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 362

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 363 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 422 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 479 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 599 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 634


>gi|223985330|ref|ZP_03635403.1| hypothetical protein HOLDEFILI_02709 [Holdemania filiformis DSM
           12042]
 gi|223962702|gb|EEF67141.1| hypothetical protein HOLDEFILI_02709 [Holdemania filiformis DSM
           12042]
          Length = 968

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 182/440 (41%), Gaps = 26/440 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           Q++  E     A  D ++G+ N  +F ++   IL      D     ++ I+I ++K +N+
Sbjct: 539 QRRRTEMFRHKAEMDRISGLYNEDTFTEKAQAILAQ----DPPPYYLIYINIRRFKIVNE 594

Query: 582 VLGIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +LG+   D +L  +  R+ +        +  R++ + F ++   E              +
Sbjct: 595 LLGVEQADQLLSHIGSRLQDYCGRYPGSLACRITADHFMLMTPCEA------------YQ 642

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH----VESF 695
           +      L +    +  S+ +  +  +  +    L     A+                + 
Sbjct: 643 ANGREDILKDYASDLNLSLEYGVYPITDRSLPMKLMQDRAALAAKNRTDPMFSEVGFYTD 702

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +          + +++  A++  E+ +       ++ + ++G EAL++W HP  G +   
Sbjct: 703 QQRQRIIREQQVLDEIEGAMDRGEIIIYIQAKYDIVAQRVIGGEALVRWQHPVRGLLGPG 762

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ + EE  +I  ++ ++ E+  + +          P  + +N++  +     L     
Sbjct: 763 QFVGVLEENGLIMQLDYYVWEKTCQFLQRQHRLHEQVP-PVSVNVSKYNFYRANLVALFT 821

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            LI+K    P  ++L  +E+    + E+   ++ +L++ G ++ +DDFG   S L+    
Sbjct: 822 DLIAKYELRPGDLQLEITETACAEDTEQIYAVIRQLQQAGFTVLMDDFGAGYSSLNMFKD 881

Query: 876 IPFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            P D +K +   ++    + E+  A++ SI+ ++ ++   +I + +  +  +  L  +  
Sbjct: 882 APVDIIKLDMGFISSDENNAERSGAVIASIVNLSHSLNIPVIVEGVETQAQVDFLKSIDT 941

Query: 933 DYIQDSHVASPLGFNSILKL 952
            YIQ  + + P+       L
Sbjct: 942 RYIQGYYFSRPVPEEDYSAL 961


>gi|332298340|ref|YP_004440262.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
 gi|332181443|gb|AEE17131.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
          Length = 863

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 94/438 (21%), Positives = 191/438 (43%), Gaps = 13/438 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            +  L     D +TG+PN+        T++  +        +    +I  +  IN+ +G 
Sbjct: 433 KDENLRLYTTDPITGLPNKYLMHKETDTLIRENRLS---AYSFAYFNIKDFVLINNRIGF 489

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
             G+ VL    R+ G LL+  + L     + F  IL  E  +  I        ++     
Sbjct: 490 DGGNKVLAEFARKAGLLLEPEERLFHTGADNFIAILKKERVNFVIFSLNHIQLETACAE- 548

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSD 703
              ER+I +    G      ++  +  ++     A    K      V  +    S+    
Sbjct: 549 --EERQIALHIRCGIYKPDGTEQRTETIVNRLISAFMLTKTNKNQDVAQYDETVSTDVVH 606

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +++ + +  A+ ++E ++VY P ++L    + G EALI+W+      IS ++F+ I+E+
Sbjct: 607 TMLMSQQIPQALADNEFFVVYQPKVKLESRTLTGAEALIRWNR-GGRIISPTQFIPISEK 665

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +++ ++ F+L  +   +  W     + P+ I +N +       ++ + +  +I     
Sbjct: 666 TGIVRRLDFFVLNHVCSKLDQWLKA-GVQPVKISVNFSKLHFSQPDIAQRICNVIDTWQI 724

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               I++ F+E++     +  +  +  L++ GIS ++DDFG+  S LS L  + FD +K 
Sbjct: 725 PHDLIEIEFTETLYTDAQQNLKETMQLLKRAGISSSIDDFGSGYSSLSLLQNLNFDVLKL 784

Query: 884 NGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + SL+        A  ++ ++I MAK++   ++A+ +     +  LT + CD IQ     
Sbjct: 785 DKSLIDTILPNTQAKTVVTNVIRMAKDLHMDVVAEGVETRETVSLLTELNCDIIQGFFFD 844

Query: 942 SPLGFNSILKLLKE-RFP 958
            PL      K LK+  +P
Sbjct: 845 KPLPEPEFEKRLKQKHYP 862


>gi|330952869|gb|EGH53129.1| EAL:GAF protein [Pseudomonas syringae Cit 7]
          Length = 588

 Score =  326 bits (837), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 103/427 (24%), Positives = 190/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   +  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQAVASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++  +  R+  LL     L ++S  RFG +L  +            + K    P+     
Sbjct: 223 LVTGIKSRLERLLPPTCSLYKVSPTRFGFLLAGDRTPEH---LFRTILKDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +   + +   + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRNPVEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTGAVHADDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ K    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGKHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R+ G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQEGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
            ++L  L
Sbjct: 578 EALLNWL 584


>gi|268610732|ref|ZP_06144459.1| response regulator/GGDEF domain/EAL domain-containing protein
           [Ruminococcus flavefaciens FD-1]
          Length = 316

 Score =  326 bits (837), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 4/308 (1%)

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKE 709
            I ++ S G++       +  ++L +AE A+  A   +G        +         +++
Sbjct: 6   SINLSCSAGYSMLPRDGKSFRDILDHAEFALKSASGSQGCICAYEPSMHDSIIGNTEMEK 65

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L LA+E +EL+L Y P I L   +I+G+EALI+W  P    IS   F+ IAE   +I  
Sbjct: 66  ALALAIEKNELHLFYQPKIDLATGKIMGVEALIRWIKPDGTIISPDVFVPIAENSHLIGK 125

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I+ F+L    R    W+     P I + IN AS D    +L + +   ++K+      ++
Sbjct: 126 ISDFVLNEGCRQNKMWQKM-GYPNIVMSINFASTDFYQTDLKDKVFEALAKSGLDAQWLE 184

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E++ + +   +   + +LR++G+ L +DDFGT  S LSYL  +P   +K + S +T
Sbjct: 185 VELTETLALSDVNFAISQMNKLRELGVKLAMDDFGTGYSSLSYLQTLPITLLKLDRSFIT 244

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 IA  I+ ++I +AK+ +   IA+ I  ++    L   GCDY Q      P+  +
Sbjct: 245 DIEHDNIAYEIVSAVIRIAKSKKIETIAEGIENQVQESILRMAGCDYAQGYLYGKPMPPS 304

Query: 948 SILKLLKE 955
            I K  +E
Sbjct: 305 DIQKFFEE 312


>gi|268634730|gb|ACZ16578.1| diguanylate cyclase/phosphodiesterase [uncultured bacterium]
          Length = 554

 Score =  326 bits (837), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 190/437 (43%), Gaps = 13/437 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID-IDKYKKINDV 582
           K ++ +   +  +  T +PNR +  + L      S   DN+   V+ ID I + K +   
Sbjct: 119 KYMKRLRWLSNYNPTTMLPNRNALFNDLKRFDKESYGGDNIILAVVAIDNILELKSV--- 175

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  V DD    + RR+   L   D +      +  I+L    +      F   +   + 
Sbjct: 176 FGFGVIDDATRQMARRL--ALNGGDDIYHTDSAQLAIVLN--KDPETNQKFLDNLSVLLK 231

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFR 701
             +   +  + V   +G+  +   ++     L  AE A+   +         + ++ +  
Sbjct: 232 EAVTYNDISVHVETRVGYVEFKRIELEPQVYLHRAEAALALVRERAIEMTAFNPKIVTQT 291

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            + + I  +L  A++  +L L Y P + L   EI  +EAL++W HPK G I    F+  A
Sbjct: 292 EENLSILGELQTAIKTKQLCLYYQPQVDLRTGEIRSVEALLRWQHPKRGLIMPGAFIARA 351

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I+ I  F L         W+ Q     I + +NI++++LL     E + AL+ + 
Sbjct: 352 EQSSLIQTITEFALREAIEQHKQWKIQG--VEIPVSVNISTRNLLHQNFTERVIALLDEY 409

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 I+L  +ES ++ + E++   L RL + G S+++DDFGT  S L YL  +P   +
Sbjct: 410 QIDGRWIELEVTESAIVVDMEQAIDELVRLAEAGFSISIDDFGTGYSSLQYLHRLPVSLI 469

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +    E + A  I+ + + +A+ +    IA+ +  +     L +  C+  Q   
Sbjct: 470 KIDQSFIKRLPEDKGAVYIVDAAVTLAQKMGIKTIAEGVEPQEVYDYLQQTECNMAQGYF 529

Query: 940 VASPLGFNSILKLLKER 956
           ++ P+  +   +    +
Sbjct: 530 ISKPIAQDRFSRWFLNQ 546


>gi|225386586|ref|ZP_03756350.1| hypothetical protein CLOSTASPAR_00333 [Clostridium asparagiforme DSM
            15981]
 gi|225047284|gb|EEG57530.1| hypothetical protein CLOSTASPAR_00333 [Clostridium asparagiforme DSM
            15981]
          Length = 1108

 Score =  326 bits (837), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 100/446 (22%), Positives = 192/446 (43%), Gaps = 25/446 (5%)

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            +  ++G   +I  +K + +      + D+LTG+ NR S+           + DD+    V
Sbjct: 683  LSYFVG--REIRHRKDARQLEHSI-YHDSLTGLLNRSSY----DRYRRDYSRDDSSSIGV 735

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            +  DI+  + +N+  G   GD+++  L   + +     + + RL+ N F IIL S     
Sbjct: 736  ICADINDLRAVNEAQGTKAGDELICRLANLLKQHF-PRNQVFRLNSNEFDIILESLTEPE 794

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                F   + +  A         +++      + W   +    ++ K A   M   K R 
Sbjct: 795  ----FEEKLEQMKATLSLTAGLSVSLG-----SVWDDQERNLDDVQKQAVELMRLEKQR- 844

Query: 689  GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                   +  + +  R      L  A+E     +   P + L    + G EALI++   +
Sbjct: 845  ---YYENQPRTRKLGRTESLRQLLQAIERRSFRVFLQPKVFLNSGSLAGAEALIRYYDEE 901

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G IS + F+   E   +I  I+LF+LE + R +  W    +   + I  N +   LL N
Sbjct: 902  KGVISPAAFVGNLERENLISHIDLFVLEEVCRMMERWNKSGH--ALTISFNFSRITLLSN 959

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            ++   +++++ K     SR+++  +ES+     +    +L R   +G  ++LDDFGT+ S
Sbjct: 960  DIVRSVESIVKKYQVDRSRLEIEVTESIGELGKDTICKVLRRFGDLGYRISLDDFGTRYS 1019

Query: 869  LLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L+ L  I FD +K + SL++ S + R    ++R +I M  ++    +A+ +  E   + 
Sbjct: 1020 NLAVLSDIRFDVLKLDKSLVSKSCDDRVSRQVVRHVISMCNDLHIRTVAEGVEEEDQERI 1079

Query: 927  LTRMGCDYIQDSHVASPLGFNSILKL 952
            L    C+  Q      P+  +   +L
Sbjct: 1080 LREANCEIGQGYRYGKPMAEDEFERL 1105



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 57/160 (35%), Gaps = 13/160 (8%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPI 449
                + Q + +  + +  ++      ++++++     +  T  + T  G     +    
Sbjct: 124 FLVSGYHQNMANLDQMKRWSLNMGWQEIFEYNVTSRTALVYTDRMLTYGG--QRQIRNFP 181

Query: 450 RNWLP--YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           ++W+    +H + +D F    ++           E R++  + ++ W  + +    +  G
Sbjct: 182 QSWVEDGIVHPDFQDAFLQTFEAVKKGEEQSF-CELRLKNQEREYSWFRMELEVTGSEEG 240

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                +G  +DI++QK      +  +         NR   
Sbjct: 241 SPEIILGRLDDISKQKAMETAYIRESR-------LNRALL 273


>gi|15641936|ref|NP_231568.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587841|ref|ZP_01677599.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121727848|ref|ZP_01680915.1| GGDEF family protein [Vibrio cholerae V52]
 gi|147673575|ref|YP_001217466.1| GGDEF family protein [Vibrio cholerae O395]
 gi|153818757|ref|ZP_01971424.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|153822501|ref|ZP_01975168.1| GGDEF family protein [Vibrio cholerae B33]
 gi|227082064|ref|YP_002810615.1| GGDEF/EAL family protein [Vibrio cholerae M66-2]
 gi|254849021|ref|ZP_05238371.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|298498029|ref|ZP_07007836.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|9656471|gb|AAF95082.1| GGDEF family protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547942|gb|EAX58025.1| GGDEF family protein [Vibrio cholerae 2740-80]
 gi|121629884|gb|EAX62298.1| GGDEF family protein [Vibrio cholerae V52]
 gi|126510720|gb|EAZ73314.1| GGDEF family protein [Vibrio cholerae NCTC 8457]
 gi|126519975|gb|EAZ77198.1| GGDEF family protein [Vibrio cholerae B33]
 gi|146315458|gb|ABQ19997.1| GGDEF family protein [Vibrio cholerae O395]
 gi|227009952|gb|ACP06164.1| GGDEF/EAL family protein [Vibrio cholerae M66-2]
 gi|227013832|gb|ACP10042.1| GGDEF/EAL family protein [Vibrio cholerae O395]
 gi|254844726|gb|EET23140.1| GGDEF domain-containing protein [Vibrio cholerae MO10]
 gi|297542362|gb|EFH78412.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 655

 Score =  326 bits (837), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 203 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 259 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 316

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 317 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 376

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 377 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDRL-GCEALIRWQHSEFG 435

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 436 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLD--VSINLS-NSLFDET 492

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 493 LPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 552

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 553 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 612

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 613 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 648


>gi|254437758|ref|ZP_05051252.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
 gi|198253204|gb|EDY77518.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
          Length = 644

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/455 (23%), Positives = 193/455 (42%), Gaps = 13/455 (2%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L      +D   +   LE  L     D LT + NR +F   L  +L+  A        V 
Sbjct: 192 LAMFAAQHDAAARLAELEDSLRL---DTLTKLLNRPAFDRALNIMLEDRAA-GTGEVAVF 247

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++D+D +K IND    A GD VL+   RR+   +    I+ RL G+ F   +   + +  
Sbjct: 248 LVDLDSFKPINDTYSHAAGDQVLIETARRLQSRVGQMGIVGRLGGDEFVCAVQDLSGTDD 307

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS----SEMLKNAELAMYHAK 685
             +FA  +   I+ PI   +R++ + ASIG       + +       +   A+ AM+ +K
Sbjct: 308 AMEFARTLSALISRPIRWAQRQLKIGASIGVTMTGDGQSSPPANVPALCSAADQAMFMSK 367

Query: 686 HRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    ++   F        K+ L  ++ N  +   Y P I L   +I+G EAL +W
Sbjct: 368 SSPNKGPILYQTHLFAPRMSPDDKQILVDSIANETILPFYQPKIHLPTGQIIGFEALARW 427

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +HP  G    SEF+    EL +       M  ++ RDI +   +   P   + +N++   
Sbjct: 428 NHPTLGTRGPSEFLDQINELGLQGDFMTSMATQVVRDIETLLGRGYDPG-QVSLNLSEVT 486

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL-LGRLRKIGISLTLDDF 863
           L  +   + +  +I+    +   + L  +E V +     +    +     +G+ ++LDDF
Sbjct: 487 LATHSGRQDLHRIIAANPTAAQHLTLEITEDVFIARAADAIQASIASFHDLGVRISLDDF 546

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  +   +L  + FD +K + S + G         ++R  + +A  +  ++IA+ +  +
Sbjct: 547 GTGFASFHHLRQLDFDELKIDTSFVAGLGHDSTSEVLVRGFLNIASGLGVSVIAEGVETD 606

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              ++L  MGC   Q    +  + F     LL ++
Sbjct: 607 AQSQDLINMGCVVAQGYLFSPAVPFAQATDLLTDQ 641


>gi|229507972|ref|ZP_04397477.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229511792|ref|ZP_04401271.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229518929|ref|ZP_04408372.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229607517|ref|YP_002878165.1| GGDEF family protein [Vibrio cholerae MJ-1236]
 gi|229343618|gb|EEO08593.1| GGDEF family protein [Vibrio cholerae RC9]
 gi|229351757|gb|EEO16698.1| GGDEF family protein [Vibrio cholerae B33]
 gi|229355477|gb|EEO20398.1| GGDEF family protein [Vibrio cholerae BX 330286]
 gi|229370172|gb|ACQ60595.1| GGDEF family protein [Vibrio cholerae MJ-1236]
          Length = 641

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 244

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 245 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 303 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 362

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 363 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDRL-GCEALIRWQHSEFG 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 422 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLD--VSINLS-NSLFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 479 LPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 599 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 634


>gi|170744811|ref|YP_001773466.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168199085|gb|ACA21032.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 749

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/583 (22%), Positives = 223/583 (38%), Gaps = 31/583 (5%)

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL---AVLGSGDIVWDWDIVR 425
            AL  G++           +   A     +      ERQSL   A   +   VW  D+  
Sbjct: 158 AALAEGVLARHAEARRAARERDAAAAALRRLGAEMAERQSLFDRACHSAKIGVWSCDLAT 217

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             ++ T  +  +  L  GS    +R  +  ++  D         +     RG    +  +
Sbjct: 218 GALSWTDTVYDLFELPRGS--PILREEIARLYAPDSFAAMEAARARAIRERGTFVLDAEI 275

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
             A     WM +      +     LR  G   DIT +    E     A  D LTG+ NR 
Sbjct: 276 VTARGNRRWMRLTGNVECDGV-RPLRLFGTKQDITAEHTLWERTRFLAETDVLTGLANRS 334

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F  RL + LD     +     ++++D+D +K +ND  G A GD  LV +  R+  L + 
Sbjct: 335 VFQARL-SALDGPQARERGPGALLLVDLDGFKPVNDTFGHAAGDACLVEVAARLRALCRE 393

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D++AR+ G+ F I++            A  + +++A P+    +   + AS+G A   +
Sbjct: 394 ADLVARIGGDEFAILIGPSGGPAAAERVAARVLRALAAPMAPGGQVFQLGASVGIAL--A 451

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS--ELYLV 723
               S+++   A+LA+Y AK  G N    F      S           A       + + 
Sbjct: 452 DGCGSADLFIRADLALYAAKAAGKNTFRCFTPDLRSSGEKQAAAAAEAAAALGAERIEIR 511

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P +RL D  +VG EA+ +   P             A E  +   I  +++ER  R   
Sbjct: 512 FQPRLRLADGGLVGFEAVPRLAGPSG----QDPLAAAASEPAVTARIAAWIMERSLRQAG 567

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG-NPE 842
            W          + +   +  L +    E + A I +   +P  I++  +E++ +  +P 
Sbjct: 568 HWTAARLAGR-RLALRACAPQLREPGFAEDLAARIQRHGLAPEMIEVEVTEALFVQPDPG 626

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSL------LSYLGYIPFDTVKFNGSLMTG--STEK 894
             R  L +LR   + + LD      +       L  L   P D VK + +L+    ++  
Sbjct: 627 PMRAALAQLRARRVRIVLD------ASASIAGVLGRLRSDPVDAVKLDRALVGRFLASPL 680

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             A+L +I+     +   +IA  I  E   + L  +GC   Q 
Sbjct: 681 DRAVLDAILRFCAGLAIEVIADGIETEAQHEGLLALGCPVGQG 723


>gi|254463851|ref|ZP_05077262.1| diguanylate cyclase/phosphodiesterase [Rhodobacterales bacterium
           Y4I]
 gi|206684759|gb|EDZ45241.1| diguanylate cyclase/phosphodiesterase [Rhodobacterales bacterium
           Y4I]
          Length = 490

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 198/437 (45%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D++TG+  R  F +    I    A D +LR  V ++D+D YK++ D  G   GD ++  
Sbjct: 48  RDSITGMMLRDGFEEETARIYAECA-DTDLRSAVFIVDLDDYKELADRHGQDAGDRIMQQ 106

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILIS--ENNSLKIADFAIAMRKSIAMPINLLEREI 652
              +I   L+  D++ARL  +RF I L    + +       A  ++ +   P+ L    +
Sbjct: 107 CGAQIASALRQNDVVARLGDSRFAICLAPTLQLDLELCIQLAGRIQSAAEEPVPLDGTTV 166

Query: 653 TVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKE 709
            +T+SIGF     +   T ++    A  A+  A+  G   + ++        + R  ++E
Sbjct: 167 YMTSSIGFCQRNRAPGKTGADWTGAAIAALAEAQSNGPGGIRAYSADMSGRGNSRSNLRE 226

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +   A+EN ++   + P I      + G EAL +W HP  G I  S F+   EE  ++  
Sbjct: 227 EAAAALENGQIQAWFQPQICTDTGRVSGFEALARWSHPVQGLIPPSTFLPALEEAGLMDR 286

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  ML      + +W       P  + +N A+++L +  L   ++  + +    PSR+ 
Sbjct: 287 LSQVMLYNALVAVKAWDAAGVNVPC-VGVNFATQELRNPGLAGRVKWELERFELPPSRLC 345

Query: 830 LSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L  +G  + LDDFGT  + ++ +       +K + S +
Sbjct: 346 VEILETVMTDQPDGVVTRNILALSDLGCHIDLDDFGTGHASIAAVRRFNISRIKIDRSFV 405

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ ++   +A+ +    +   L ++GC ++Q   +  P+ F
Sbjct: 406 MKADQDPEQQKLISAILTMAERLDLDTLAEGVETAGEHALLAQLGCGHVQGFGIGRPMPF 465

Query: 947 NSILKLLKERFPLVKNT 963
              L  +      ++NT
Sbjct: 466 EQTLDWIAAHEAKLQNT 482


>gi|315185863|gb|EFU19628.1| diguanylate cyclase/phosphodiesterase [Spirochaeta thermophila DSM
           6578]
          Length = 478

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 189/447 (42%), Gaps = 14/447 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKI 579
           + K+    +     Q   TG+P R+      + + + ++ +   +  + +I +D+ Y++I
Sbjct: 39  KLKEEYRQVRRLVDQSPDTGLPVRKGLEQDFSRLREEASREGK-KLALFLIRLDEKYERI 97

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            +         +L    RRI  +L       R     F    +   +   +      +  
Sbjct: 98  ENS--RDRSRVLLFKTARRIRRVLPGLYQGDR--PEEFLGARLVSGDEEAV-SLGKEISD 152

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            + +P +    +I     +G   +         + +   +A+  A       V       
Sbjct: 153 VVMVPQDPPAEDIQFGCYVGIVLFPDHGEEWPALFEMLHIAVAEAMREKERAVLYTGDIG 212

Query: 700 FRSDRVMIKED-LCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            R     +  + +   + +   E +L Y PI+      IVG EALI+WD+P  G++S + 
Sbjct: 213 RRHFEEELVLEHMRRVLRDGFEEFHLAYQPIVD-RSLSIVGAEALIRWDNPALGSVSPAR 271

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I AI  ++L R  + +  W  +     +FI +N++      ++L   +  
Sbjct: 272 FIPLAESTGDIMAIGQWVLYRACKQLSLWHARGFR-DLFISVNLSPPQFKLHDLAFRVAG 330

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++    +    +KL  +E V+M +PE +   +  LR +G+ L +DDFGT  S L YL   
Sbjct: 331 ILKSLAFEGRFLKLEVTEGVLMDHPEEAVEKMNELRAMGVKLCIDDFGTGYSSLGYLRRF 390

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFDT+K + S + G         I+R+II +A  +  + +A+ +  E  +  L   GC+ 
Sbjct: 391 PFDTLKIDRSFVVGVEDDPSLQGIVRAIIGVAGALGISTLAEGVENERQLDFLMAEGCEM 450

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVK 961
            Q  + A P+      +LL+E   + +
Sbjct: 451 FQGFYFARPVPPEEFERLLREGVRVAR 477


>gi|153002492|ref|YP_001368173.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS185]
 gi|151367110|gb|ABS10110.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS185]
          Length = 882

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 193/423 (45%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL+  +         +  ++ ID+D++K+
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S NN     D +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + I+ P  L   E    ASIG       K  TS  ML+NA+ AMY AK  G      F  
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITISGKHKVDTSESMLRNADTAMYQAKANGKGCYVIFDD 617

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +        V ++ +   A+ ++E+ L Y P++     ++  LE+ + W HP  G +   
Sbjct: 618 NAQHQAIQDVELENEFRQALHHAEIELSYLPVVDFNTGQVHALESRLFWQHPLRGLLQQE 677

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +   ++ + +  I R       Q +   I + + ++S+ L    +   ++
Sbjct: 678 QLSALAEQSHLTVELDKYTISIIDRTYAELLKQ-HDESIELHVMLSSQHLKHKHVLRSLK 736

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T  + S + L F+E  ++   E        L+K+G+ L +  +G+  S L+ L +
Sbjct: 737 NTLKQTQLNLSHLWLFFNEKALVQETENHINGFELLQKLGVKLGISHYGSGYSALNSLLF 796

Query: 876 IPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + +L      ++ + ++ +    A  +E       I      +  + +G   
Sbjct: 797 LPIKGLKLDANLTKQIHAEQLLKLMSAYQKTASTLELQTFVDGIDSPEQKRIFSELGYQL 856

Query: 935 IQD 937
            Q 
Sbjct: 857 GQG 859


>gi|332185702|ref|ZP_08387449.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
 gi|332014060|gb|EGI56118.1| diguanylate cyclase domain protein [Sphingomonas sp. S17]
          Length = 486

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 102/435 (23%), Positives = 197/435 (45%), Gaps = 11/435 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+ NR     R    +  +A        ++++DID+++ I    G A GD +L 
Sbjct: 45  RTDALTGLTNRPQL-QRAGQAMIDAAHGRKRGVALLLLDIDRFRAIAGSFGHAAGDALLQ 103

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + + +        I+AR  G+ FG ++        +I   A  +   IA PI L ++E 
Sbjct: 104 HVAKTLRGEAPSEAIVARFEGDCFGCLIPVDARGRDRINRLAERLAIRIAQPIRLADQEF 163

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710
              A+I  A    +  T  ++++ A+LA+  AK RG      F  +   +   R MI  D
Sbjct: 164 APRAAIALAQVEGTTATIDQLIRRADLALIAAKSRGDGRPLWFDPAMEAAMAERNMIVSD 223

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ N ++   + P + L +  + G E L  WDHP  G +++  FM +AE   +   +
Sbjct: 224 LRAALTNGDIQPRFEPQVDLGNARLTGFEVLAHWDHPILGAMTAERFMPVAEASGLSGDV 283

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L ++ +       W      P + +   + +    D  L + +   +++  +   R+++
Sbjct: 284 SLALMRQAMAAARDW-----DPSLTLSFPLTTAQFHDAWLAQKIIKTLTECGFPAHRLEV 338

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ +  N   ++ ++  L+  GI L LD+FG+  S L++L  +PFD V+ +   +  
Sbjct: 339 EITENALFANMALAQSIVVSLKNQGIGLALDEFGSGYSSLAHLRALPFDRVRIDPDFIGD 398

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                + + I+ +I+ +  N+   I AK +      + L  +GC + Q     +P+    
Sbjct: 399 MAADPELMKIVTAIVQLGDNLNLPIAAKGLRDAETQERLRIIGCAHGQGPFYGAPMDLGQ 458

Query: 949 ILKLLKERFPLVKNT 963
           + +LL E+  L  + 
Sbjct: 459 VRQLLAEKRLLAGSA 473


>gi|262192162|ref|ZP_06050322.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
 gi|262031951|gb|EEY50529.1| GGDEF family protein [Vibrio cholerae CT 5369-93]
          Length = 610

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 158 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 213

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 214 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 271

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 272 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 331

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 332 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 390

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 391 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 447

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 448 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 507

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 508 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 567

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 568 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 603


>gi|254562531|ref|YP_003069626.1| diguanylate cyclase [Methylobacterium extorquens DM4]
 gi|254269809|emb|CAX25782.1| putative membrane protein, diguanylate cyclase (GGDEF) domain
           [Methylobacterium extorquens DM4]
          Length = 675

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 104/450 (23%), Positives = 182/450 (40%), Gaps = 14/450 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E +   +  D LTG+ NR++    L   L L+  +      V++ID+D +K  N
Sbjct: 225 EVVQRGEELFRLSTTDVLTGLANRRAIDSVL-QELWLANVNSGQAFGVILIDVDFFKLYN 283

Query: 581 DVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD  L +L   +     K    + R  G  F  +  +++    +       + 
Sbjct: 284 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 343

Query: 640 SIAMPINLLERE---ITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESF 695
             A+ I    R      VT SIG A             +  A+ A+Y AK  G N    F
Sbjct: 344 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKPERAISAADDALYVAKEEGRNRARIF 403

Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S          L  AV +  +  V+ PI+ +    I   E L++    +   IS
Sbjct: 404 NARMRHSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAIS 463

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  +  ++L +    + S  +        + +NI+++ + +      
Sbjct: 464 PETFIPVAERTGAILEMGAWILRQACDLLASEPELPI-----VSVNISARQISEPNFISS 518

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A++     +PSR+ L  +ES  +        L+ RL  IGI + LDDFGT  + L+ L
Sbjct: 519 VEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDFGTGFAGLTCL 578

Query: 874 GYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             + FD VK +   +      +   +L++II +  N     I + +     I  ++  G 
Sbjct: 579 SELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGA 638

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           D  Q  H+  P+  + +  +L E  P  +N
Sbjct: 639 DLFQGYHLGRPMPRSELKLMLSEYLPSNEN 668


>gi|86360385|ref|YP_472273.1| hypothetical protein RHE_PE00107 [Rhizobium etli CFN 42]
 gi|86284487|gb|ABC93546.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 667

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 189/429 (44%), Gaps = 13/429 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTG+ NR++    L     L   D      V++ID+D +K+ ND  G   GD
Sbjct: 223 LHLSNTDALTGLENRRAIDQHLREHWQLWQ-DHRAPFAVLLIDVDYFKRYNDCYGHQEGD 281

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGII--LISENNSLKIADFAIAMRKSIAMPIN 646
             LV++++ +  +      I+ R  G  F ++  +     +  +A+   A  +++A P  
Sbjct: 282 RCLVAVSQILQSVASSWGSIIGRYGGEEFLVVTPMPDLERATDLAEAMCAAVRALAWPHE 341

Query: 647 LL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSD 703
              +    +T S+G +          +++  A+ A+Y AK  G +++  F         D
Sbjct: 342 HRRDGTTVITVSVGLSYTRDETKQVDKVIYEADRALYAAKATGRDNLVVFDPEDPQSSDD 401

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              I   L +A+E+  + LVY PI  +   E   +EAL++        +S + F+ IAE 
Sbjct: 402 SEDIAAILKIALEHGLVSLVYQPIRNVQTGETDAVEALMRLRMLDGTPVSPAIFIPIAER 461

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  +  + +  + RD+      A        +N++  +L      + + A +++   
Sbjct: 462 TGSIIELGRWAIRTVCRDL-----LATNLVQVASVNVSPIELQMPGFAKYVAATLAEFNV 516

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           + +R+    +E + +   +     +  LRK+G  + LDDFGT  + LS+L  I FDT+K 
Sbjct: 517 TGARLAFEITEGMELEIDQDVVRCISDLRKLGAQVWLDDFGTGFAGLSWLRLIEFDTIKI 576

Query: 884 NGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + S +   + +R   +L  II + +N    I+ + +      + + + G + IQ  ++  
Sbjct: 577 DRSFLHDCSTERGKRMLLDIISLLRNRGVRILIEGVETIEHQRLMQQYGINQIQGYYIGR 636

Query: 943 PLGFNSILK 951
           P     +  
Sbjct: 637 PAPAAQLEA 645


>gi|296135372|ref|YP_003642614.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
 gi|295795494|gb|ADG30284.1| diguanylate cyclase/phosphodiesterase [Thiomonas intermedia K12]
          Length = 780

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 107/439 (24%), Positives = 198/439 (45%), Gaps = 17/439 (3%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D  + +   E +   A QD+LTG+ NR+   + L    D +  D  +   +++ D+D +
Sbjct: 343 RDSAQLRDRSEIMYRLANQDSLTGLLNRRGMGEYLQRAHDRA-RDHGIGYALVLFDLDHF 401

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G A GD VL  +   +   ++  D +AR  G  F ++L   ++       A  
Sbjct: 402 KLINDGFGHAAGDAVLQQVAHLLQTRVRKEDQVARWGGEEFLVLLPD-SSLQTAHATAEK 460

Query: 637 MRKSIAM-PINLLEREITVTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRGGNHVES 694
           +R+ I+   +++   E+ +TAS G ++W      +S E+L   + A+Y+AK  G N V+ 
Sbjct: 461 LRELISHTRMSVGGAELRLTASFGVSAWEPGGPLASAELLGQCDSALYNAKAGGRNRVKQ 520

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F   S +         L  A+E+  + + Y P++ L D +I+G EAL +        I++
Sbjct: 521 FEGKSAQDYLQGFT--LKRAIEDDRIRVAYQPLVSLADGQIMGFEALARLVAENGEVIAA 578

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +A  L +   I+  + +++         Q   P  ++ IN ++  L   E  + +
Sbjct: 579 GQFIDVANRLRLEHRIDSRVSKQVMARCSQRIKQTGTPMKYM-INCSADFLSRPEDVQQL 637

Query: 815 QALISKT----LYS----PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                                + +  +E  ++G+ E  R L+  L   G  L +DDFG+ 
Sbjct: 638 LDRAQHFCSTCAVDMTGKAKPMVIEITERQLIGDAEAVRQLVQPLIDFGFQLAVDDFGSG 697

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S   Y+  +P   +K    L+  +  + +  A++RSI  MA  +    IA+ I  E   
Sbjct: 698 YSSYLYVLKLPVSYLKIEADLVREAAHSARAQAMVRSINSMAHELGILTIAEGIEDEATA 757

Query: 925 KELTRMGCDYIQDSHVASP 943
           + + R+G D+ Q  +   P
Sbjct: 758 EVMRRIGVDWGQGYYWGRP 776


>gi|88858414|ref|ZP_01133056.1| predicted signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas tunicata D2]
 gi|88820031|gb|EAR29844.1| predicted signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas tunicata D2]
          Length = 848

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 98/466 (21%), Positives = 199/466 (42%), Gaps = 24/466 (5%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +I+       D    +   E  L NA  +  TG+PN      RL  +        +++ +
Sbjct: 383 EIILMAMALAD--RMRYQKEKALYNATHELTTGLPNLNLLETRLKQL-----QQQDVKYS 435

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-------------DILARLSG 614
           + VI+I  +  I+  +     D +++ + + I   +                  +A+   
Sbjct: 436 LCVIEITNFHSISPYISNQEIDKLILKVVQDISAQINTDRRFIEFEDQQGMPIKVAKARD 495

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
               I+     N   +      ++ +I   + L    I +   IG       +   S ++
Sbjct: 496 GVLAILASKFINLQALLLQLEKIQHTINKDLTLSGLFINLDTHIGVCDHPGKETLISHII 555

Query: 675 KNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
             A  A+   K  G +            + R+ +   L  A+ N+EL L + P I L   
Sbjct: 556 SQAFQALAKGKREGADICIFEDSEDFNVTQRLALATQLQQAIRNNELELYHQPQIHLATN 615

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I G E L++W+HP++G +   +F+ IAE+  +I  + L+++    + +    +Q     
Sbjct: 616 TIAGSEVLLRWNHPEFGFVPPDKFIRIAEDTGVINELTLWVINSAFKHLNELINQGISNH 675

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + INI+ KD+        +   +  +   P  I L  +ESV++ + +    L+     
Sbjct: 676 -KVSINISGKDISMRGFLNKISMALEVSQVPPELINLELTESVMVSDFKILSELMKAFAN 734

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +GI++++DD+GT  S L+Y+  +PF+ +K + S +     + +   I+++ I MAKN+  
Sbjct: 735 MGINVSVDDYGTGYSSLAYISQLPFNELKIDKSFVLNLSESPRNYTIVKNTIEMAKNLHL 794

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++A+ +      ++L   GCD +Q  + + PL F+  L  L++  
Sbjct: 795 CVVAEGVETSAVEQKLRDCGCDIVQGYYYSKPLPFSEYLIWLRKYQ 840



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 111/360 (30%), Gaps = 10/360 (2%)

Query: 46  LTSITRIYVNQGEDFQVFTAADID--GISRRIEVSASSIRHRGDWAVFALANTSDSQLER 103
           + + T  +++   + +            +  +     S   +  W    L N S+     
Sbjct: 44  IYTRTAYFIDSNNNMEFDDLMTKPHLFTNAPLSNVPWSFIQQTYWLKLTLDNKSNKNNIL 103

Query: 104 LIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIM 163
                +  L        +     +      +      + +     F   +      T  +
Sbjct: 104 FAYFDNPMLDELDIIQVNKAQHLVKKKQLGDHVKELSLADKSFPTFSFALAAHDSTTLFL 163

Query: 164 EISTPNLP--QIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPT 221
            I T  +    I ++  N Y           G  IG+  ++A++  + +   +  + +  
Sbjct: 164 RIKTTGIAKTPIQIYSANEYYQFKEIVHFIWGAFIGICIMIALYNLVLFYGIKDPVYLIY 223

Query: 222 FAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSE-IALSSSLIIFLFMYLHWNRWHA 280
                 VL    +  GF   +        L         +++   ++F   +L + +   
Sbjct: 224 IGYIISVLMLTGVVLGFGHYIWPSALEFQLHQHVIFLNFSIAIFSLLFTLSFLRYFKSRG 283

Query: 281 KVGYITFSGIACIAILFCMSFYYP-MVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
           ++  +    + C+     +S   P  + A I  I +A + +     I Y    G+  A  
Sbjct: 284 RLFIVARYFLYCMMFFATLSLLLPEYIAAPIFFINMAILYVITFTLIGYKIRLGFRWAKF 343

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            + +W+ + +      + +T +++       L     LI + +   ++   LA     Q 
Sbjct: 344 YVISWLPMILCAPIQPLMLTGKIEYSF----LTSYAFLIGVSLEIILMAMALADRMRYQK 399


>gi|256822894|ref|YP_003146857.1| Chase sensor-containing diguanylate cyclase/phosphodiesterase
           [Kangiella koreensis DSM 16069]
 gi|256796433|gb|ACV27089.1| diguanylate cyclase/phosphodiesterase with Chase sensor [Kangiella
           koreensis DSM 16069]
          Length = 783

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 100/433 (23%), Positives = 175/433 (40%), Gaps = 13/433 (3%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I+E + S   ++  A  D LT + NR +    L  ++         +    ++DIDK+
Sbjct: 355 KNISELESSRNQLVYQANHDFLTDLENRFALDKFLNELIS---QGGGAKHIACLLDIDKF 411

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
             +ND  G   G+ VL    + I   +   D   RLS + F I+    N           
Sbjct: 412 NLVNDSFGHEAGNFVLKQFAKIIHTNIGAKDHAYRLSADEFLIVFDQANLESAFKVIHNI 471

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +        +  E  I++ AS G A+  S  +  SE+L     A   AK +GGN +  F 
Sbjct: 472 LMTVHDTVFDWTEMHISIDASAGMATIGSDTLGPSEVLSELASARTIAKEKGGNRIHVFD 531

Query: 696 ---RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                S     +V+    +  A++     L    I  L  +  +  E L+       G I
Sbjct: 532 KSDPESIHFHQQVLWVNRINKALDEDRFALRTQTIKDLNGDGDLK-EVLVVMLDEHGGMI 590

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+  AE   ++  ++ +++ R+   + +    ++       IN++   L   E  E
Sbjct: 591 PPIEFIPAAERFNIMPQVDNWVVNRVLEYLEANSQASDYLWC---INLSGVSLNSEEFRE 647

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   IS+       +    +E+  + N E  +  +  L + G    LDDFG+  S   Y
Sbjct: 648 SLVEQISENQELAQYMVFEITETAAINNYELVKEFIDSLNRFGCKFALDDFGSGMSSYGY 707

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  IP D +K +GS +    E      I++SI  ++  +    IA+ +  E  + ++  M
Sbjct: 708 LRNIPVDFIKVDGSFIKQILENDYDQTIVKSICEISVQLGIKTIAEFVENEQVLNKIKEM 767

Query: 931 GCDYIQDSHVASP 943
           G DY Q  H+  P
Sbjct: 768 GFDYGQGYHIDKP 780


>gi|160877209|ref|YP_001556525.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella baltica OS195]
 gi|160862731|gb|ABX51265.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS195]
 gi|315269413|gb|ADT96266.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           baltica OS678]
          Length = 882

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/423 (23%), Positives = 193/423 (45%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL+  +         +  ++ ID+D++K+
Sbjct: 438 IQQRRSMEAKLVHDAKHDALTGLPNRAMFMERLSQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S NN     D +  + 
Sbjct: 498 INDTMGHLEGDKFLIETASRLKSCIRDNDTLARLGGDEFVILLDSINNINDARDVSERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           + I+ P  L   E    ASIG       K  TS  ML+NA+ AMY AK  G      F  
Sbjct: 558 QKISQPYRLGTMEFNSGASIGITISGKHKVDTSESMLRNADTAMYQAKANGKGCYVIFDD 617

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +        V ++ +   A+ ++E+ L Y P++     ++  LE+ + W HP  G +   
Sbjct: 618 NAQHQAIQDVELENEFRQALHHAEIELSYLPVVDFNTGQVHALESRLFWQHPLRGLLQQE 677

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +   ++ + +  I R       Q +   I + + ++S+ L    +   ++
Sbjct: 678 QLSALAEQSHLTVELDKYTISIIDRTYAELLKQ-HDESIELHVMLSSQHLKHKHVLRSLK 736

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T  + S + L F+E  ++   E        L+K+G+ L +  +G+  S L+ L +
Sbjct: 737 NTLKQTQLNLSHLWLFFNEKALVQETENHINGFELLQKLGVKLGISHYGSGYSALNSLLF 796

Query: 876 IPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + +L      ++ + ++ +    A  +E       I      +  + +G   
Sbjct: 797 LPIKGLKLDANLTKQIHAEQLLKLMSAYQKTASTLELQTFVDGIDSPEQKRIFSELGYQL 856

Query: 935 IQD 937
            Q 
Sbjct: 857 GQG 859


>gi|289675965|ref|ZP_06496855.1| EAL:GAF [Pseudomonas syringae pv. syringae FF5]
 gi|330981047|gb|EGH79150.1| EAL:GAF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 607

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 192/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + ++  +  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDISQAVASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  R+  LL     L ++S  RFG +L  +            + K    P+     
Sbjct: 223 LVTAIKSRLECLLPPTCSLYKVSPTRFGFLLAGDRTPEH---LFRTILKDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +   +G  +   +     + ++    A   A+ R  G  +      + +     +  
Sbjct: 280 PVQMQVGLGVVTLNRNPAEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            L  A   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTGAVHADDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+ K    P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGKHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +   + + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYWVVAEGIETDEIRRLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
            ++L  +
Sbjct: 578 EALLNWI 584


>gi|261856647|ref|YP_003263930.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Halothiobacillus neapolitanus
           c2]
 gi|261837116|gb|ACX96883.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Halothiobacillus neapolitanus
           c2]
          Length = 615

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/449 (21%), Positives = 210/449 (46%), Gaps = 20/449 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E ++    +   A  D++TG+ NR++  + L + + ++ +D      V V D D+   I 
Sbjct: 165 ELQEKEHNLAYLATHDSVTGLLNRRALTEGLRSHI-MAQSDSFSCALVEVTDSDQLLLIE 223

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G+   D  L ++  R+  ++     +  + G +  +  +              + K+
Sbjct: 224 ---GVESVDFFLRTVASRLKMVMDDHFGICGVWGGQTFLCALPFAG-EAAGRVFNRLAKA 279

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEML----KNAELAM-YHAKHRGGNHVESF 695
           +  P++  +  +T+    G++     ++ + E +    + A  A+    K        + 
Sbjct: 280 VFAPVDDFDVVVTLHGRGGYSGVRPKELDTPEAIDATVRRAGFALASQHKRSNLVVEFNQ 339

Query: 696 RVSSFRSDRVMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            +      R +++ +L  A+     + +L + P + L  E IVG EAL++W HP+ G IS
Sbjct: 340 IMEDTALRRSLLERELMSAMSEHPEQFFLQFQPKVELTRETIVGGEALLRWQHPELGFIS 399

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL-----DN 808
            +EF+ IAEE   I+ + L ++E   + +   + +     + I +N++   L        
Sbjct: 400 PAEFIPIAEEKGQIEVLGLIVIEHALQFVRRMQSELGR-AVPIAVNVSGVQLELMRAKGQ 458

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +Q L++    +P  ++L  +ES +M   +     L +LR++ +S+ LDDFGT  S
Sbjct: 459 SLVDEVQRLLTAYAVAPPLLELEITESALMIGFDWVVDALHQLRELDVSVALDDFGTGYS 518

Query: 869 LLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             +Y+  +P  T+K + + +    ++ ++ A+L +I+ MA+++  T +A+ +    DI  
Sbjct: 519 SFAYIQTLPISTLKIDRAFVDNAANSPRQAALLGAIVRMAQDLGLTTVAEGVETREDIDL 578

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L ++ C   Q  + + PL  +  + LL++
Sbjct: 579 LKQLNCPIAQGYYYSRPLMPDDFITLLRQ 607


>gi|167625834|ref|YP_001676128.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella halifaxensis HAW-EB4]
 gi|167355856|gb|ABZ78469.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           halifaxensis HAW-EB4]
          Length = 909

 Score =  326 bits (835), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/427 (26%), Positives = 208/427 (48%), Gaps = 5/427 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I ++K+    ++ +A  DNLTG+PNR  F++RLT  +         R  V+ ID+D++K 
Sbjct: 463 INQRKRIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLERFAVLFIDMDRFKL 522

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD  L+   +R+ + ++  D+LARL G+ F I+L S +      D A  + 
Sbjct: 523 LNDTLGHLEGDRFLIETAKRLKQCIRNNDMLARLGGDEFVILLDSISGQQDAEDVAERVL 582

Query: 639 KSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  ++   +ASIG A    S   TS  +L++A+ AMY AK +G      F  
Sbjct: 583 AELSKPYQLANQQFKSSASIGLAMSGQSRSDTSESILRDADTAMYQAKSQGKGCYTIFNH 642

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +   + I+ +L  A+ N EL L Y PI+ L  E+++G E  + W HP  G +  +
Sbjct: 643 GVNQRQIKDLKIESELKNALINKELQLSYLPIMALNSEQVIGFEPRLFWHHPSLGKLKQA 702

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   IAE   M   ++ ++LE + +   S   Q       + I+I+S+ L        ++
Sbjct: 703 QLNNIAEHCHMAIELDNYLLELVNQSFHSMLQQYGNQ-FQLQISISSQHLNHKHALRALK 761

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I +  ++ S++ L F+E   + N +        L K+   L ++ +G+  S +S L +
Sbjct: 762 NRIKQCSFNISKLTLFFNEKEFVQNTDNHISAFDSLNKLDAKLGIEAYGSAHSAISSLIF 821

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + S +    +++ + ++++    A+ +   + A  I      + L  +G   
Sbjct: 822 LPIQALKLDPSYVAHLESKQHVKLVKAYFNAAQALGLDVFAVGINDSKQCEALQEIGFTN 881

Query: 935 IQDSHVA 941
            Q S + 
Sbjct: 882 GQGSALG 888


>gi|126737056|ref|ZP_01752791.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6]
 gi|126721641|gb|EBA18344.1| diguanylate cyclase, putative [Roseobacter sp. SK209-2-6]
          Length = 525

 Score =  326 bits (835), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 195/437 (44%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +DN+TG+  R+ F   L  ++     +  LR ++  I+ID YK +    G A  D V+ +
Sbjct: 83  RDNVTGLMLREGFELELE-LVAKDCENSGLRSSLYFIEIDDYKDLTIREGQAASDHVMQT 141

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
              RI   L+  D +AR+  ++F + L      +       A  M+ ++  PI+L    I
Sbjct: 142 CGERIASTLRNGDTVARIGDSKFAVCLTPVLQLDLESCVQMAGRMQAAVEGPISLDGSTI 201

Query: 653 TVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
             + SIGF     +     S+  +    A+  A+  G + +  +             +++
Sbjct: 202 YTSCSIGFCLNSRAPSSQPSDWSQATNAALSEAQQSGPSGIRVYSSDMHVRTSTRTNLRD 261

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +   A+E  ++   + P I     ++ G EAL +W HP  G +  ++F+ +  +  +++ 
Sbjct: 262 EAAEALETGQIVPWFQPQISTDTGKVTGFEALARWMHPVRGMVPPAKFLPVLRDAGLMER 321

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  ML      + +W       P  + +N A+++L +  L E ++  + +      R+ 
Sbjct: 322 LSQVMLYHSLTALNAWDSAGFKIP-SVGVNFATQELRNPNLAENIKWELERFNLPAERLS 380

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V+   P+      +  L  +G  + LDDFGT  + +S +       +K + S +
Sbjct: 381 VEILETVMTDQPDDVVTRNIAALSDLGCQIELDDFGTGHASISGVRRFNIARIKIDRSFV 440

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +    ++  ++ +I+ MA+ ++   +A+ +    +   L+++GC ++Q   +  P+ F
Sbjct: 441 MRSDQDPEQQKMIAAILTMAERLDLETLAEGVETAGEHALLSQLGCGHVQGFGIGRPMPF 500

Query: 947 NSILKLLKERFPLVKNT 963
           +  L  +      +++ 
Sbjct: 501 DQTLDWITAHEAKLQDA 517


>gi|229523953|ref|ZP_04413358.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
 gi|229337534|gb|EEO02551.1| GGDEF family protein [Vibrio cholerae bv. albensis VL426]
          Length = 641

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 244

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 245 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 303 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVMYY 362

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 363 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 422 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 479 LPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 599 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 634


>gi|238921598|ref|YP_002935113.1| biofilm formation regulator HmsP [Edwardsiella ictaluri 93-146]
 gi|238871167|gb|ACR70878.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 664

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 181/424 (42%), Gaps = 18/424 (4%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +P++  F+  L       + D +    VM++ I   +++  VL     D +L++L  R
Sbjct: 236 TNLPSQTLFVSLLEQ----QSQDGHEGQCVMMVSIPTLQEVTGVLDSGQRDMLLMTLVER 291

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + E      +LA+ S + F I+             A  +   +  P+ L    +  TA+I
Sbjct: 292 LHEGTSPNSLLAQASQDGFLILAGDVARPSDAMQQAQRLMSLLTQPVTLDNLALRPTAAI 351

Query: 659 GFASWTSSKITSSE---------MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI-- 707
           G A    S+  S E         +L  A  A+  A   G N V  F        +  +  
Sbjct: 352 GIAMCRPSQEISEEDRGLSQTERLLMQARSALNMAMTDGKNRVLFFEPQLAERVKARLTQ 411

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + ++  A+   +  L   P I L  + + G EALI+W     G    S+F+ +AEE   I
Sbjct: 412 QNEILNALRQGDFELYLQPQIDLRSQRLAGAEALIRWHRQDGGCSEPSQFIPLAEEQGGI 471

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+  ++LE   R ++ W+ +  M  I + +N+++  L D    + ++ L+ +   +   
Sbjct: 472 VALGEWVLEEAVRILVDWQRRGLM--IPLSLNVSALQLADARFGQRLETLLLQHAIAAEH 529

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E+  + +  R    L  LR  G+ + LDDFG   S L+YL ++P D +K + S 
Sbjct: 530 LHLEITETAYISDIHRVADTLDCLRNQGVRVALDDFGMGYSGLNYLRHLPVDILKIDKSF 589

Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +        A++R +  +A+ +   ++A+ +  +     L   G  Y Q    +  L   
Sbjct: 590 IDQI-PLDGALVRIVSSIAEVLSLEVVAEGVETQGQCDWLLANGIHYAQGYFFSPALSQR 648

Query: 948 SILK 951
             L 
Sbjct: 649 DFLA 652


>gi|304394109|ref|ZP_07376032.1| putative diguanylate cyclase [Ahrensia sp. R2A130]
 gi|303293549|gb|EFL87926.1| putative diguanylate cyclase [Ahrensia sp. R2A130]
          Length = 587

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/546 (21%), Positives = 228/546 (41%), Gaps = 24/546 (4%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-RDNFRTILDSFVG 473
           G   W +D   + V  + +I+ I G              P+    D +    T ++  + 
Sbjct: 21  GVGSWSYDPETEAVQWSSEISAIYGTKPDEPVTLELTLAPF--PEDAKAALTTTMERAIA 78

Query: 474 YRRGRLQYEFRVR-AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             R   +YE  +      +  W+     P    +G+ L+  G   D+TE       +   
Sbjct: 79  ENR---RYELILPFDVQGKRKWVRSVGCPEC-RDGENLQLFGTLEDVTETVLQQRQVERK 134

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT--VMVIDIDKYKKINDVLGIAVGDD 590
           A+ D LTG+PN      +L   +D     D    T  V V+++     I         D 
Sbjct: 135 AYHDPLTGLPNEHGMNRKLKHFIDEQQACDGQPKTQIVCVLEL----LIAPGTSPNEIDT 190

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +  +    I +        AR +  RF +I+               +  +++        
Sbjct: 191 IQRTFASAIRQ---RGGFAARFNDGRFMLIIEEPEGVDASEIVLHHI-TTLSRLRRADGI 246

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IK 708
            +T+    G+     ++ +++++  + EL +  A+   G  V S+  +   +++    + 
Sbjct: 247 VMTMQIRCGWLRLDGNRTSTTDITDDLELTLRTARTHAGASVVSYSPALRENEKRRAKVA 306

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +    A+EN E+   YHPII L   ++ G EA  +W+HP  G I+ + FM + ++  +  
Sbjct: 307 KQFQDALENGEVVPYYHPIICLDSGKLSGFEAFARWNHPTRGLIAPNLFMQVFDDSAICV 366

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++  ++E+IA D+ +W  Q       + IN+ + DL  ++  +   AL+     SP  +
Sbjct: 367 RLSHVIMEKIANDMATWHRQGLHFG-SVGINVTALDLQQDQFSQRTLALLEDRGLSPRHL 425

Query: 829 KLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
            L   E+V++  P       + RLR+ G+ + +DD+GT  + L  L  +P D +K + S 
Sbjct: 426 MLEVGEAVMLQTPSPEVTDHINRLREAGVLIAIDDYGTHAASLQQLKNVPCDIMKIDRSF 485

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     + K  +I+ ++I M+K+   + +A+ I    +  +L  MGC   Q    A P  
Sbjct: 486 IGNMTVSPKDRSIVSALIQMSKDFGYSTVAQGIETREEAAQLAAMGCSRGQGFFYAKPAP 545

Query: 946 FNSILK 951
             ++ K
Sbjct: 546 AEAVSK 551


>gi|229521853|ref|ZP_04411270.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
 gi|229340778|gb|EEO05783.1| GGDEF family protein [Vibrio cholerae TM 11079-80]
          Length = 641

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 244

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 245 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 303 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 362

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 363 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 422 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 479 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 599 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 634


>gi|254504824|ref|ZP_05116975.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222440895|gb|EEE47574.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 752

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 103/439 (23%), Positives = 201/439 (45%), Gaps = 11/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ +      F D LTG+PNR++ L+ L ++     +  N    ++V DI +++KIN   
Sbjct: 305 RTQKEFEKLGFHDPLTGLPNRRALLEALRSV---RPSSANGTSGLVVFDIRQFRKINHRF 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD +L ++   +  +    D L R  G+ F ++    N+      FA  + K I  
Sbjct: 362 GDKSGDMILRAIASDLTAVAGPKDFLCRTGGSEFALLRRDANSIADFEAFARRVLKKICS 421

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              +  +E  + A+ G +   ++   S  +L +A LA+  AK +G   +E F        
Sbjct: 422 VKVVEGQETVIDANGGVSFQKANTALSENILTDATLALRAAKQKGSKELEVFSPMMRAIF 481

Query: 704 RVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               +   ++  A+E+  +   Y P + +   +I+G EAL +W          + F+  A
Sbjct: 482 ESNAETAKEVLSALEHGNIVPWYQPQVDIHTGQIIGAEALARWIDGDQVRFPGA-FLPAA 540

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+   ++ I   + E +   + +  +  ++  I + +N+++  L    + E + A I   
Sbjct: 541 EDAGYMELIETAVRENVLS-LATTLETRDIHGIHLGLNVSASFLEQENVAEEIYAKIVSL 599

Query: 822 LYSPSRIKLSFSESVVMGNPER--SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
              PS   L   E+V++        +  + RL ++G  + LDDFGT  S +S L  +  D
Sbjct: 600 GLKPSNFNLEILEAVMIDEIAAMPVKANIVRLSELGFFIELDDFGTGHSSISSLRDLKVD 659

Query: 880 TVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            VK + S +TG            ++I +AK+++ +++A+ +  E +   L + GCDYIQ 
Sbjct: 660 RVKIDRSFITGVDTNPGLQKFTSALINLAKSLDISVLAEGVETEGERLWLQQNGCDYIQG 719

Query: 938 SHVASPLGFNSILKLLKER 956
             V+  +    IL +++ +
Sbjct: 720 FLVSKAIPEGEILDMIQRQ 738


>gi|126698391|ref|YP_001087288.1| putative signaling protein [Clostridium difficile 630]
 gi|115249828|emb|CAJ67645.1| putative signaling protein [Clostridium difficile]
          Length = 642

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 193/424 (45%), Gaps = 12/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ NRQSF+  L   ++           ++ I +D +K +N+  G   GD  L  +
Sbjct: 222 DDLTGVLNRQSFIQELDLNINTEQ-----SGFIITIALDDFKFMNETFGTKNGDIALKEV 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + + + +   + + R+ G+ F I++ S+       D    + +    P  + E    + 
Sbjct: 277 GKYLIQ-IHDVNHVYRIGGDIFSIVVNSQLGIEP-DDIIRKIEERFKKPWLVEEISFNLA 334

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
            SI    +  +  T+ +++   + +++ AK             +S     + +IK  L  
Sbjct: 335 TSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKE 394

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++N    + Y PI           EAL++ +H + G I   EF+ IAE+  +I +I L 
Sbjct: 395 ALKNDGFEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLV 454

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E++ R I S   +       I +N++    +   L + +  L++K   SP++ KL  +
Sbjct: 455 VFEKVCRFIASDEFENLKLD-NIAVNLSVVQCMQKNLADDLLYLMNKYNVSPTKFKLEIT 513

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+V MG+    +  + RL  +G+   LDDFG   S ++ +  +PF  +K + SL+    E
Sbjct: 514 ETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSVIKLDKSLIWSMNE 573

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  + +II +   +    +A+ +      ++L  M C+Y+Q  + + P+  +    
Sbjct: 574 DSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKN 633

Query: 952 LLKE 955
           LLKE
Sbjct: 634 LLKE 637


>gi|168333239|ref|ZP_02691529.1| hypothetical protein Epulo_00175 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 760

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 101/455 (22%), Positives = 198/455 (43%), Gaps = 21/455 (4%)

Query: 513 IGIANDIT--EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           I   ND+T   +K     I    F D LT +PNRQ F   +T IL     + + +  ++V
Sbjct: 316 ISYINDLTVVMEKTVSTKIKELLFYDXLTKLPNRQHFNKHITKIL-----NQDRQFALIV 370

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLK 629
           ++I  +K I+D      GD +LV + RR           + R    +F +IL       +
Sbjct: 371 LEIRDFKSIHDGNIEGKGDIILVEIARRFKHFSNHKNVQITRFGEEKFILILQEIYTESE 430

Query: 630 IADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +  F  A+    A  PIN++ + I +                 E+     +    AK   
Sbjct: 431 VITFYHALTDYFAQYPINIIHKSINILFDSIGIICPQHASXKDELFSKISIMSNQAKELA 490

Query: 689 GNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            N +  F    +++      I+  L +++ N+E +L Y PII   ++ I   EAL++W  
Sbjct: 491 INDIVMFDPLVYQNSLREDIIRNILKVSITNNEFFLNYQPIID-KNKVIKKAEALVRWKX 549

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
              G +   +F+ I E+  +I  +  +++ER+++D+       N   I I IN++   + 
Sbjct: 550 XLLGFVYPDQFIHITEQTELIIDLGYWIIERVSKDMQEXYSANN--KIQISINVSPIQIR 607

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMG-----NPERSRLLLGRLRKIGISLTLD 861
             +     + ++ +     S I    +ES ++      N       + +L+ +GI + +D
Sbjct: 608 MPDFVSNAKDILDRYNIHYSDICFEITESALLQTKATVNENIVTDNIEKLQAMGIRIAMD 667

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           DFGT  S  +YL    FD +K +   +  +T K+  I+ SI  ++  +   ++ + +  +
Sbjct: 668 DFGTGYSSFNYLNEYNFDILKLDKLFVNKTTTKQYEIINSIKNISDILNMEMVIEGVETQ 727

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                +   G   +Q  + + P+ ++++  LL++ 
Sbjct: 728 EQFDIVKNYG--LVQGYYFSKPIEWDALQLLLQQE 760


>gi|23010453|ref|ZP_00051136.1| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 299

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVE 716
           G A       ++  + KNA++A+Y AK  G N    +     ++      ++ DL  A+ 
Sbjct: 1   GVAVGPRDGDSADTLFKNADIALYRAKDSGRNTFRFYESGMDQAVATRNLLEIDLRNAIR 60

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +S   L Y PI  L +  + G EAL++WDHP  G IS  EF+ +AEE  +I  +  + L 
Sbjct: 61  SSGFTLHYQPIFNLAEGVVRGFEALLRWDHPVRGPISPGEFIPVAEETGLIAQLGAWALN 120

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           +  R+  +W  +     + + +N+++       L + +   ++ +     R++L  +ESV
Sbjct: 121 QACREAAAWPGE-----LRVAVNVSAVQFRKAGLEQAVMRALANSGLPARRLELEITESV 175

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKR 895
           +M + +     L RLR +G+ + LDDFGT  S LSYL   PFD +K + S +        
Sbjct: 176 LMQDSDSVIDCLHRLRAMGVRIALDDFGTGYSSLSYLCRFPFDKIKIDRSFIREIDEPVA 235

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A++R+++ + + + TTI A+ +  E  +  +   GC   Q   +  P    +   L+  
Sbjct: 236 AAVVRAVVGLGERLGTTITAEGVETEEQLARIRNKGCTEAQGFLLGRPQSAEATRTLVAR 295

Query: 956 R 956
           +
Sbjct: 296 Q 296


>gi|152997385|ref|YP_001342220.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150838309|gb|ABR72285.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 594

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 186/440 (42%), Gaps = 21/440 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD--LSATDDNLRPTVMVIDIDKY 576
           + E++   + +   A  D +T + NR +  + ++ ++    + T +++    ++ID++++
Sbjct: 158 VNERRYMQDRLKYLAQHDFVTQLYNRDALDEHISHLISGVQAKTAEHIPY-FILIDVNEF 216

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAI 635
           + IND  G   GD++L  +   + EL     D  ARLSG++F I++    +   +  F  
Sbjct: 217 RLINDSCGCIAGDELLHQMAIMMSELADPQRDFCARLSGDKFAIVISKGGD-EAVESFFR 275

Query: 636 AMRKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-- 692
            ++K          ER+  +T +      T   ++  +++  A+   Y +K  G +    
Sbjct: 276 LLQKGFKDFSFVWDERQFRMTVTQVAIPITLDMVSFEQVVMLADEICYSSKKSGIHSRII 335

Query: 693 ------ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                          +  + I + L   +       V   I     ++I   E L++   
Sbjct: 336 KNAKDLAYDEHRGNLNWGLRIIDGLDKDLFEVHFQQVCSLINDEPKKKI---EILVRLKD 392

Query: 747 PK-WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            +  G I  ++F+  AE   ++  I+ +++    + +   R         + +N+++  +
Sbjct: 393 EETGGLIYPNDFIRAAERFGIVSKIDRWVISNTMQQLAE-RAGLWDEIDQVALNVSALSV 451

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                 E +   +       S+     +E+  + N   +R  +  L + G ++ LDDFGT
Sbjct: 452 RQANFAEFIIEQLKYYQLDGSKFCFEITETEALNNFSDTRRFMSLLHEHGCTIALDDFGT 511

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S  +YL  +PFD +K +G  +       I   ++ SI+ +AK +   ++A+ +  +  
Sbjct: 512 GFSSFAYLMDLPFDLIKIDGMFIKDMHVNEIHYGMVDSIVKLAKMLNKPVVAEFVENQSI 571

Query: 924 IKELTRMGCDYIQDSHVASP 943
           + +L  +G ++ Q      P
Sbjct: 572 VDKLKLLGVEWGQGYFFHKP 591


>gi|170724983|ref|YP_001759009.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
 gi|169810330|gb|ACA84914.1| diguanylate cyclase/phosphodiesterase [Shewanella woodyi ATCC
           51908]
          Length = 642

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/434 (21%), Positives = 185/434 (42%), Gaps = 14/434 (3%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D   ++ S E  +   F D  TG+ ++  F   +  ++D   T+      V+ ++I  
Sbjct: 210 IADNLNEQSSDEESISTMFLDPTTGLHSKLGFQRIIQYLIDKKQTNS--FIVVLSLEISG 267

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
              IN +L   V    L     R+   +   + L+ L+ + F  I++       +     
Sbjct: 268 -GSIN-LLDEEVKRSFLKKAIVRLKSDIPDNNTLSILNSSEFAFIMLDSTTEE-VISILT 324

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVE 693
            +  +    + +    +      G++ + S +   +E+L+ A +A+Y AK          
Sbjct: 325 RVIDAFLNYLMVDGHPMPCELRAGYSCYPSCESEPNELLRMAYIALYQAKSTPSRKPVGY 384

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM--DEEIVGLEALIQWDHPKWGN 751
              +       + +   L  A+E  E  L + PI+     DE I   EALI+WDHP  G 
Sbjct: 385 QDAIVQELRLHLELAHCLPRAIELQEFALYFQPIVNTTELDEPIQHYEALIRWDHPIKGV 444

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ IAE+   I AI  +++  + R +      +    + + IN++     +  L 
Sbjct: 445 IPPDHFIEIAEKSGDIIAIGYWVIHEVCRCLSQ---PSVPQNVGVSINLSPVQFKEEMLV 501

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  +I     S +RI +  +ES  M + + ++ +       G  L++DDFGT  S LS
Sbjct: 502 QNIAKIIKSYGISTNRITIEITESSAMQDNQLTKEMFSEFHAEGFKLSMDDFGTGYSSLS 561

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL    FD +K + S +  +    +   I ++++ +A +++ T+I + I  +   K ++ 
Sbjct: 562 YLLNFHFDIIKIDKSFIDNTLVDVQYEIIAQTVVKLAHDLKLTVICEGIETDEQYKMVSD 621

Query: 930 MGCDYIQDSHVASP 943
              D IQ   ++ P
Sbjct: 622 WQADMIQGYLISRP 635


>gi|94501003|ref|ZP_01307528.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Oceanobacter sp. RED65]
 gi|94426943|gb|EAT11926.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Oceanobacter sp. RED65]
          Length = 625

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 175/420 (41%), Gaps = 19/420 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D +TG  +R+     L T++            +  IDID++K IN++ G +  D  L 
Sbjct: 215 RFDQVTGFYSRRELTKYLRTVI-----RSQQSMFMFYIDIDQFKLINELCGHSGADSFLK 269

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREI 652
            + + +           R + + F I+L S  N      +A  +R++I     +  E E 
Sbjct: 270 HIAKLLS--PNSHTQCFRSNSDEF-ILLSSLRNIDDAIRYANTIRENIESSYFSWAENEF 326

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF----RVSSFRSDRVMIK 708
           + + SI       S  +  ++   A+LAM   K +GGN V +F         R   +   
Sbjct: 327 SSSCSIAIIEINRSFKSIEDIYSAADLAMLECKEQGGNCVITFSEFNDRIIQRQQDMRRV 386

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            ++  A+      L    + R+  ++    E L++  +P     +    +  AE+  ++ 
Sbjct: 387 HEINRALTEDRFTLYKQKVQRIASDKNYYYEILLRLKNPDGSISAPGAIIAAAEKYNIMG 446

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I+ ++L      +  + ++         IN++   L D      +Q LI     +PSR+
Sbjct: 447 KIDYWVLRNTIAYLADYPEEQA----SFAINLSGATLSDPSCINYLQHLIDTYQITPSRL 502

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   +E+  + +   + ++L  LR +G  ++LDDFGT  S  SYL  +    +K +G  +
Sbjct: 503 QFEITETEAVKHLSTTNIILSALRDMGCRISLDDFGTGSSSFSYLQQMKIQNLKIDGVFI 562

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI+ S + +AK++  +  A+ +  E  +  L  +  DY+Q   +  P   
Sbjct: 563 KDLHHNSVNQAIVESAVKVAKSMGISTTAEFVETEEVVALLKELQVDYVQGFGIHKPEPL 622


>gi|254974431|ref|ZP_05270903.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255091823|ref|ZP_05321301.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255313558|ref|ZP_05355141.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516242|ref|ZP_05383918.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649340|ref|ZP_05396242.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260682511|ref|YP_003213796.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686110|ref|YP_003217243.1| putative signaling protein [Clostridium difficile R20291]
 gi|306519431|ref|ZP_07405778.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260208674|emb|CBA61455.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212126|emb|CBE02756.1| putative signaling protein [Clostridium difficile R20291]
          Length = 642

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 193/424 (45%), Gaps = 12/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ NRQSF+  L   ++           ++ I +D +K +N+  G   GD  L  +
Sbjct: 222 DDLTGVLNRQSFIQELDLNINTEQ-----SGFIITIALDDFKFMNETFGTKNGDIALKEV 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + + + +   + + R+ G+ F I++ S+       D    + +    P  + E    + 
Sbjct: 277 GKYLIQ-IHDVNHVYRIGGDIFSIVVNSQLGIEP-DDIIRKIEERFKKPWLVEEISFNLA 334

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
            SI    +  +  T+ +++   + +++ AK             +S     + +IK  L  
Sbjct: 335 TSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKE 394

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++N    + Y PI           EAL++ +H + G I   EF+ IAE+  +I +I L 
Sbjct: 395 ALKNDGFEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLV 454

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E++ R I S   +       I +N++    +   L + +  L++K   SP++ KL  +
Sbjct: 455 VFEKVCRFIASDEFENLKLD-NIAVNLSVVQCMQKNLADDLLYLMNKYNVSPTKFKLEIT 513

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E+V MG+    +  + RL  +G+   LDDFG   S ++ +  +PF  +K + SL+    E
Sbjct: 514 ETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSVIKLDKSLIWSMNE 573

Query: 894 KRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  + +II +   +    +A+ +      ++L  M C+Y+Q  + + P+  +    
Sbjct: 574 DSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFKN 633

Query: 952 LLKE 955
           LLKE
Sbjct: 634 LLKE 637


>gi|229529042|ref|ZP_04418432.1| hypothetical protein VCG_002135 [Vibrio cholerae 12129(1)]
 gi|229332816|gb|EEN98302.1| hypothetical protein VCG_002135 [Vibrio cholerae 12129(1)]
          Length = 641

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 189 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 244

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 245 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 302

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 303 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 362

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 363 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 421

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 422 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 478

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 479 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 538

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 539 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 598

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 599 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 634


>gi|255658462|ref|ZP_05403871.1| sensory box/GGDEF family protein [Mitsuokella multacida DSM 20544]
 gi|260849799|gb|EEX69806.1| sensory box/GGDEF family protein [Mitsuokella multacida DSM 20544]
          Length = 1541

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/543 (19%), Positives = 213/543 (39%), Gaps = 27/543 (4%)

Query: 422 DIVRDRVTTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           D     V     + ++    +    +H         +  +        L  +   R   L
Sbjct: 4   DGSEHIVQYNSMMLSLFQCETREDFIHLTGGILRGMVLADHYPAVSEQLARWQKERARGL 63

Query: 480 QY-EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            Y  F +    +    +   IR +    G+ L +     D   ++ +L+           
Sbjct: 64  HYLTFEILTGKSHVRRIDANIRLI-EREGE-LYWSCYLADAGLRRLTLDEDKV------- 114

Query: 539 TGIPNRQSFL-DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
            G+  R+ F  + L                 +  +I  +K  N   G A GDD+L  +  
Sbjct: 115 -GLLTREGFFKEALNQAKHDKEQKRFGTHCPVYFNITNFKLYNANRGYAAGDDLLRHMAF 173

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + E L    ILA LS + F  +   E  ++++      M + IAMP         VT  
Sbjct: 174 VLRESL-PGAILAHLSADSFLALAPVERLTVRVEQVCRQMNRFIAMP--------GVTVK 224

Query: 658 IGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
            G   +    K   +     A++A   AK         +R       ++   +      A
Sbjct: 225 AGLRFYRPKDKSPVTAAFDQAKMACDEAKKDAKRSWVIYREEMGERLQMRNYVLTHFAEA 284

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +    + +   P +RL+  ++  +EAL++W+ P+ G IS +  + + EE  +I  ++ FM
Sbjct: 285 MRKGHIKVYLQPCMRLLTGKLCNVEALMRWEDPQHGMISPAIVIPVLEESGLIHELDAFM 344

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +  + R +  ++ +  +P + + +N++S D +  +     + +  +   +   +    +E
Sbjct: 345 IRSVVRLLH-YQQENGLPLVPVSVNLSSLDFVKMDPFAIAEEVTERYGIAHDYLHFELTE 403

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           + V+ +       + +  + G  + LDDFG+  S L+ L   PFD +K + + +    +K
Sbjct: 404 TSVVRDEGILFQAIQKFHRAGYHVWLDDFGSGYSSLNVLKDYPFDLLKIDMAFLKTFNKK 463

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+ SI+ MAK I    +A+ +  E  ++ L  +GC+ IQ  +   P+    +   L+
Sbjct: 464 SRDIILSIVRMAKKIGIHTLAEGVETEEQMRFLRAIGCERIQGYYYGRPMQPEKLHDALE 523

Query: 955 ERF 957
           ++ 
Sbjct: 524 KQQ 526



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 68/179 (37%), Gaps = 20/179 (11%)

Query: 509  ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            + R+I I       + +   +   + +D +TG+ NR+   +    +         +    
Sbjct: 1376 LSRFIAIMI---RNRDAARELERMSQRDQMTGLLNRRGLSNYFMDL------PKGIPCAF 1426

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISENN 626
               D++  K++ND  G   GD ++ ++   + +  +      + R+ G+ F +I+    +
Sbjct: 1427 FFGDVNGLKRMNDEHGHKAGDALIKTVADIMLQAQRQAGKGHVFRMGGDEFLMIVEQL-D 1485

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               + +   ++R++             V+ ++G     +       ++   +  MY  K
Sbjct: 1486 ETHVEEVQQSLREAF--------HTHHVSVALGALVSMTPIPDMDAIITKVDREMYKDK 1536



 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 52/394 (13%), Positives = 118/394 (29%), Gaps = 31/394 (7%)

Query: 422  DIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D  +  +          G      + G   + L  +HI D    R   +  +   R + +
Sbjct: 838  DREQRFLGANEAFLDFFGFHDEADIVGRTDHEL-GLHIVD-PAVRQAGERLLQDGRPQYR 895

Query: 481  YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
             +F    A      +     P+  + G +   IG       +         +A  D  TG
Sbjct: 896  -DFGECIAQGGPRAIYSNRFPLYRA-GKVEGIIGRFW----EFGHDLDDYRDAVIDKETG 949

Query: 541  IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
              N +  L      +D    +      V    +   +      G A   ++L  L   + 
Sbjct: 950  YTNYRGMLMAGIEFMDNYLKNGEDFTAV-YFYVPALESAARSYGEAFRRELLQRLAEEVH 1008

Query: 601  ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE--ITVTASI 658
              +    +LA +   RF +      +  ++ D  + +  +I    ++      + +  ++
Sbjct: 1009 AAIVPGSVLAHIGSGRF-LCFHKLIHEQRLRDRLLRLANAIHNIHSVRGCPCTLYLQYAV 1067

Query: 659  GFASWTSSKITSSEML-KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA--- 714
            G+ S T S     ++L +  E A            +       + D +  +  +C     
Sbjct: 1068 GYGSETKSIEGLLQLLVERGEAARKDHLGESIYIGDRIAFDREKFDHMNERVYMCDPETY 1127

Query: 715  ---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHP----KWGNISSSEFMLIAEELCMI 767
                 N  +Y  +H             E ++    P        +   +F +      + 
Sbjct: 1128 DLVYINQAIYRDFHLPEDFSCAGKKCYEVIVGGKEPCEFCTNHLLRRDKFYMWTYHNALS 1187

Query: 768  KAINLFMLERIARDIISWRDQANMPPIFILINIA 801
              ++  + +     ++ WR         + IN++
Sbjct: 1188 G-LDYLLRDT----LVPWR--GKNYRFSMSINLS 1214



 Score = 39.9 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 454 PYIHINDRDNFRTILD------SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN- 506
             ++  DR  F   +D      + +   +      FR+R A+  + WM   + P+   + 
Sbjct: 716 AMVYPADRARFLAYIDMHAIRAALLESGQMTFSNCFRIRQAEGSYAWMRFDVVPLYLRDP 775

Query: 507 GDILRYI 513
           G+ L  +
Sbjct: 776 GEYLVCV 782


>gi|66047448|ref|YP_237289.1| EAL:GAF [Pseudomonas syringae pv. syringae B728a]
 gi|63258155|gb|AAY39251.1| EAL:GAF [Pseudomonas syringae pv. syringae B728a]
          Length = 607

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 189/427 (44%), Gaps = 17/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDD 590
           F D  TG+ NR    + +   +  S         ++V+D+     +ND    LG +   D
Sbjct: 168 FIDQPTGLYNRSRLQEDIHQAVASSVDYQ-----LVVVDMITSAFLNDIVKALGYSFSQD 222

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           ++ ++  R+  LL     L ++S  RFG +L  +            + K    P+     
Sbjct: 223 LVTAIKGRLECLLPPTCSLYKVSPTRFGFLLAGDRTPEH---LFRTILKDFETPVECRGI 279

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIK 708
            + +   +G  +     +   + ++    A   A+ R  G    E    ++ +    ++ 
Sbjct: 280 PVQMQVGLGVVTLNQGAVEEQDWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLS 339

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
                   + +L LVY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++
Sbjct: 340 SLTRAVYAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMR 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L++L         W+ Q       I IN+  +DL      + M  L+      P+R 
Sbjct: 400 PLSLWVLTSAIEQAARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRF 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L F+E  +M NP   R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+
Sbjct: 458 ELEFTEGALMHNPAEVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLI 517

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +++++I +AK +   ++A+ I  +     + + GCD  Q   +A P+  
Sbjct: 518 RNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRCLVKQWGCDEGQGYLIAKPMEA 577

Query: 947 NSILKLL 953
            ++L  +
Sbjct: 578 EALLNWI 584


>gi|330720482|gb|EGG98782.1| Sensory box/GGDEF family protein [gamma proteobacterium IMCC2047]
          Length = 279

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 76/280 (27%), Positives = 144/280 (51%), Gaps = 5/280 (1%)

Query: 681 MYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M+ AK  G N+ + F   +      R  +++ L  A+++ +  L Y PI+     +I   
Sbjct: 1   MHRAKENGRNNAQYFTLGMEVEAKQRRELEKMLRQAIDDQQFTLNYQPIVDTTTGKIKSA 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W HP  G IS + F+  AEE  +I  I  ++L    +   SW+D ++ PP  + +
Sbjct: 61  EALIRWTHPIKGVISPANFIPFAEEKGLILPIGEWVLNEACKTAASWQDHSDHPP-SVSV 119

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++S  L    + + +Q +++ +     ++ L  +ES+++ + E +   L  +R++G+ L
Sbjct: 120 NLSSYQLQRQNIPQLLQNVLAISGLPAEKLTLEITESLLLSDDEETLRQLQGIRQLGVKL 179

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LSYL   P   +K + S + G   + +  A++++I+ M +++   +IA+
Sbjct: 180 SIDDFGTGYSSLSYLKKFPISNLKIDRSFIMGLPASSEDAALVKAIVLMGESLNLNVIAE 239

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I  +     L  + C ++Q    + PL     L  LK  
Sbjct: 240 GIETQQQADFLKSLNCKWVQGFLYSKPLSKTDFLNFLKVH 279


>gi|307947143|ref|ZP_07662478.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307770807|gb|EFO30033.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 633

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/441 (24%), Positives = 199/441 (45%), Gaps = 19/441 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITE   S +     A  D LT +PNR  F + L   L     D +   +V+ +D+D +K 
Sbjct: 198 ITE---SAQRYSRLARHDALTDLPNRLYFEEVLAEALSEW--DQSETLSVLALDLDGFKG 252

Query: 579 INDVLGIAVGDDVLVSLTRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +ND LG   GD +L S+  R+  +   L   + +AR  G+ F I+L  +         A 
Sbjct: 253 VNDTLGHDGGDALLRSIASRLKNIVRNLDGRNCVARTGGDEFVILLYLQTGIADPRRIAS 312

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +   +  P       I V  S+G+    +  + +  +LK A+LA+  AK  G      +
Sbjct: 313 RICSELQRPFETEYGHIKVGGSVGYTFARADVLEADVLLKEADLALMEAKSSGPGLSRPY 372

Query: 696 RVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
             +     +  +  + DL  A++ + +   Y P   L    ++G EAL +W H + G I 
Sbjct: 373 NCTMMEDLKRRLKIEADLGSAIDANHIRAFYQPQFDLQTGRLIGAEALARWKHAELGQIW 432

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           ++EF+ IAE    I  +   + E++  ++           + + IN++   L++ E    
Sbjct: 433 AAEFIPIAEANGDIVRLGKLIFEQVCAEVAQMPHH-----LTVTINVSLAQLMEAEFPTF 487

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++ KT  SP+RI L F E  ++ NP   R  +  L+ +G+ ++L DFGT  + +  +
Sbjct: 488 VRDMLVKTGVSPARIILEFREHTLLVNPHYVRQAIVSLQALGVKISLGDFGTGTARIQDV 547

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
             + ++ +K + SL +G  E       I+  I  ++ +++++++   I  E      +  
Sbjct: 548 LQVRWNEIKVDKSL-SGLDEPDGVVPPIVNLIQHISGHVQSSLLVGGIETEHQKAGFSEA 606

Query: 931 GCDYIQDSHVASPLGFNSILK 951
           G  + Q    +  L  +   K
Sbjct: 607 GFAHGQGYFYSEALPKDEFEK 627


>gi|148975535|ref|ZP_01812406.1| diguanylate cyclase/phosphodiesterase [Vibrionales bacterium
           SWAT-3]
 gi|145964963|gb|EDK30214.1| diguanylate cyclase/phosphodiesterase [Vibrionales bacterium
           SWAT-3]
          Length = 811

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 184/449 (40%), Gaps = 23/449 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR +F+  L        +  N    ++  D+  ++KIND+ G  +
Sbjct: 346 ELKFEAEFDQLTKLANRSTFIRHLD---IRIKSSINSNCYLVCWDVMDFRKINDLYGAKI 402

Query: 588 GDDVLVSLTRRIGELL----------KFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           GD VLVSL + + + L               LARL GN+F  IL    +   I +    +
Sbjct: 403 GDSVLVSLAKALRDTLQNQQASFGFSCSDYSLARLGGNQFIAILE-IGDDQSINEEIENV 461

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA-ELAMYHAK-HRGGNHVESF 695
             ++     +      +T + G            ++     +  +++AK H  G     +
Sbjct: 462 NNALTGTNFVDYYGFRLTMATGV--LPLETPKFEKIWHRCIDEMLFNAKAHSDGESRIVY 519

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 +      I++ L    E+    L + PI      +I G E LI+          
Sbjct: 520 GEELLHTLERQDIIEKRLLECCESDNFELKFMPIFNAKTLKIDGAECLIRCPALTDIKAG 579

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE   +I  I+++++    R      +  +     I INI++ +L +    + 
Sbjct: 580 PDEFITVAERSNLISKIDMWVISTAIRSFKELTE-LHKYNGTISINISAMELYNRNFADN 638

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ +I +     S I +  +E+  + + + +   +  +R +G+ ++LDDFGT  +  + L
Sbjct: 639 IRKVIERYKVPASSIIIEITETSYVKSTKLTVQTIESIRSLGLKVSLDDFGTGYTAFNQL 698

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P D +K + S +      +    ++ SI+ +  +  T ++ + +      + L +  
Sbjct: 699 LHYPVDELKIDKSFIDHIVDDKADRKMVESIVNLGHSCNTLVVGEGVECIEQYQYLRKAN 758

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960
           CD IQ      PL +   ++ +++  P  
Sbjct: 759 CDLIQGYLFCQPLTYIEFIEFIRDHKPST 787


>gi|218531610|ref|YP_002422426.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
 gi|218523913|gb|ACK84498.1| diguanylate cyclase/phosphodiesterase [Methylobacterium
           chloromethanicum CM4]
          Length = 667

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/450 (23%), Positives = 182/450 (40%), Gaps = 14/450 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E +   +  D LTG+ NR++    L   L L+  +      V++ID+D +K  N
Sbjct: 217 EVVQRGEELFRLSTTDVLTGLANRRAIDSVL-QELWLANVNSGQAFGVILIDVDFFKLYN 275

Query: 581 DVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD  L +L   +     K    + R  G  F  +  +++    +       + 
Sbjct: 276 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 335

Query: 640 SIAMPINLLERE---ITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESF 695
             A+ I    R      VT SIG A             +  A+ A+Y AK  G N    F
Sbjct: 336 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKPERAISAADDALYVAKEEGRNRARIF 395

Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S          L  AV +  +  V+ PI+ +    I   E L++    +   IS
Sbjct: 396 NARMRHSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAIS 455

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  +  ++L +    + S  +        + +NI+++ + +      
Sbjct: 456 PETFIPVAERTGAILEMGAWILRQACDLLASEPELPI-----VSVNISARQISEPNFISS 510

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A++     +PSR+ L  +ES  +        L+ RL  IGI + LDDFGT  + L+ L
Sbjct: 511 VEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDFGTGFAGLTCL 570

Query: 874 GYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             + FD VK +   +      +   +L++II +  N     I + +     I  ++  G 
Sbjct: 571 SELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGA 630

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKN 962
           D  Q  H+  P+  + +  +L E  P  +N
Sbjct: 631 DLFQGYHLGRPMPRSELKLMLSEYLPSNEN 660


>gi|183179529|ref|ZP_02957740.1| GGDEF family protein [Vibrio cholerae MZO-3]
 gi|183012940|gb|EDT88240.1| GGDEF family protein [Vibrio cholerae MZO-3]
          Length = 655

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 193/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 203 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKKRRNQQEPIALILFDLNRFKELNDTM 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 259 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 316

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ +IG  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 317 KLVQENDPTKRLSVAIGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 376

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 377 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 435

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 436 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 492

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 493 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 552

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 553 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 612

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 613 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 648


>gi|117923723|ref|YP_864340.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
 gi|117607479|gb|ABK42934.1| diguanylate cyclase/phosphodiesterase [Magnetococcus sp. MC-1]
          Length = 809

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/608 (18%), Positives = 227/608 (37%), Gaps = 29/608 (4%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
              + I+    N   Q  ++  ++L+V+L  +  ++ V+        +  + ER  + ++
Sbjct: 215 ATAVTISSYRTNLHSQLLVLLLVLLVVLLTSYITMRRVM---GIESTLHYEKERAQITLI 271

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN--WLPYIHINDRDNFRTILDS 470
              D V   D           +  +LG    S+ G      +       +       L +
Sbjct: 272 SIADGVITTDTEGYIQDANKVVGALLGHKPASLIGKQLEQVFPTRARDEESPPLHEDLKT 331

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            +     +      V  +D     +   + P+ +S G +L  I    D+TEQ++  E I 
Sbjct: 332 LLSSATPQSMNTMVVLESDGDDLLLDATLSPVQSSEGVVLGAIITVKDVTEQQRMSEKIR 391

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D+LTG+ NR +F D     ++    D+     + VID+D++K IND  G   GD 
Sbjct: 392 YQARHDHLTGLYNRHAFADLCRESMEAMKADE--VHCLCVIDLDRFKAINDTCGHKAGDM 449

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
            L  ++  I   ++  D  AR+ G+ F I L   + +  +      + +          +
Sbjct: 450 ALKQISTMIQGCVRKYDYAARIGGDEFTIFLADCSQADGVKVMEKLLEQVQDYRFLWEGQ 509

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-----RSDRV 705
           +  +  SIG            +  + A+ A++ AK  G   + +  V S        +  
Sbjct: 510 QFNLGFSIGICEIHFQVP-FEKSFQAADAAVFQAKDDGRMCIRTRTVESNLLETPTKEET 568

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG-NISSSEFMLIAEEL 764
                L   +    L LV   ++     +       I    P    +   + F+  AE  
Sbjct: 569 NWVGRLHRVLGVEPLALVAQRMVPSPSMQDHPPLYEIFMRLPDGEKHHPPNAFLPTAERH 628

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLLDNELCEGMQALISKTLY 823
            +   ++  +L+    ++             I  IN+++K L D      + AL++    
Sbjct: 629 GLTGDLDYKVLKMALDNL------LLHSDGRIYSINLSAKTLEDKASSAALLALLAAHPK 682

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS---YLGYIPFDT 880
              +I     E+ ++ N E     L  +++ G    LD++G     L    YL  +  D 
Sbjct: 683 RAKQICFEIDENTLINNMEVCSQFLFEVKQHGAVTALDNYG---GSLGNCLYLEQLGLDI 739

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G L+  +  K     ++ SI  ++ ++    +AK +       +L  +G D+ Q  
Sbjct: 740 LKVDGQLVQQAKNKLSTRTVVSSIHNISHSMNILTVAKHVEDAELAAQLLTIGFDFQQGF 799

Query: 939 HVASPLGF 946
           + A P   
Sbjct: 800 YYAKPEPL 807


>gi|323485090|ref|ZP_08090443.1| hypothetical protein HMPREF9474_02194 [Clostridium symbiosum
           WAL-14163]
 gi|323401646|gb|EGA93991.1| hypothetical protein HMPREF9474_02194 [Clostridium symbiosum
           WAL-14163]
          Length = 652

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 204/427 (47%), Gaps = 11/427 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LT +PNRQ  LD +  ++         + T+ V+ + ++++IN+V G   GD+ L  
Sbjct: 225 RDYLTNVPNRQELLDMMGLLI---KKHPEKQFTLAVVSLRQFRQINNVCGQHKGDEFLRK 281

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   + E +   D + R SG+ F ++  SE++   I     A+R+ +  P  + E   T+
Sbjct: 282 ICGYLCE-IGPRDGVYRFSGDEFALLFTSESD-GDIRKCLAAIRERMKQPWEVEEYRFTL 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + ++G    T S  T    + + E A++ AK    G        + +    R  + + L 
Sbjct: 340 SVAVGVIRRTRSGDTLETAINSIEYAVFQAKTGRHGFICYCDEVMLAELERRNSVIQILK 399

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             ++N    + Y PI    D      E+L++ +H   G +  SEF+ +AEE  +I  I  
Sbjct: 400 DELKNPSFEMYYQPIYSAEDGAFHYAESLMRLNHTPIGQVYPSEFIPVAEETGLIIEITY 459

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L+++ + I    +Q       I +N ++    + +L + +  +I +     ++IK+ F
Sbjct: 460 IILDKVCKYINRLTEQGIEVGA-IHVNFSAVQFSEPDLAQKVLDIIKRNGTPFTKIKIEF 518

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES +  NP         + + GI + LDDFGT  S +S + +IPF TVK + SL+  + 
Sbjct: 519 TESTLAENPRLVTEFAYEMNQYGIMIGLDDFGTGYSNISTVFHIPFGTVKLDKSLVYAAM 578

Query: 893 EKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           EK+ A   +R++I   KN+   +IA+ +  E   + +     D IQ  + + P+  + + 
Sbjct: 579 EKKTAFYAVRNLISAFKNLGMRVIAEGVETEEQKRLVLDCQVDQIQGFYYSRPMSEDDME 638

Query: 951 KL-LKER 956
              L +R
Sbjct: 639 AFMLAQR 645


>gi|153826386|ref|ZP_01979053.1| GGDEF family protein [Vibrio cholerae MZO-2]
 gi|149739864|gb|EDM54055.1| GGDEF family protein [Vibrio cholerae MZO-2]
          Length = 655

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 194/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 203 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 259 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPC--AGNANFFIRNLWNDLT 316

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 317 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 376

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 377 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 435

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W  +     + + IN++   L D  
Sbjct: 436 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDW--KPYNRQLDVSINLS-NSLFDET 492

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 493 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 552

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 553 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 612

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 613 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 648


>gi|254226481|ref|ZP_04920066.1| GGDEF family protein [Vibrio cholerae V51]
 gi|125620987|gb|EAZ49336.1| GGDEF family protein [Vibrio cholerae V51]
          Length = 655

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 192/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 203 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKKRRNQQEPIALILFDLNRFKELNDTM 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 259 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 316

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 317 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 376

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 377 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 435

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  +   +  ++++++       W+         + IN++   L D  
Sbjct: 436 YINPQYLIEIAEEYGLGNKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 492

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 493 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 552

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 553 LYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 612

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 613 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 648


>gi|300713179|ref|YP_003739218.1| Diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299060250|emb|CAX53500.1| Diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 590

 Score =  325 bits (833), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 212/492 (43%), Gaps = 31/492 (6%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGI-----------ANDITEQKK-----SLEGILCNA 533
            + +       P+ N+ G +L    +             DI EQ        LE     A
Sbjct: 105 GEPYARFYAGAPLRNAGGVLLGTFCVTDTRPHAFSPAQRDILEQMAGLVMAFLETWHSAA 164

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-VIDIDKYKKINDVLGIAVGDDVL 592
           F D  TG+PN Q  +  L      + T D+LR TV+  ID+ K   +   LG+   + +L
Sbjct: 165 FTDPTTGLPNHQGLMRELQH---RATTADSLRLTVIECIDVPKAYDLARSLGMPPVEALL 221

Query: 593 VSLTR--RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
                  R+   L+  + L  L+  R+  IL  E + L ++     ++      +     
Sbjct: 222 KETGDLLRLRLALQPEERLYALAPGRYA-ILTGEQSPLTLSSLCTRLQNV--TALIEEGI 278

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +T ++G  S++ ++++  E L+ A  A++ A   G             R++   +  
Sbjct: 279 AVDLTINVGQVSFSPAEVSGQEGLRRAVSALHEAISSGNRAESFDPCTDERRNNEFRLMH 338

Query: 710 DLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           DL  A+ +   LYLVY P I L  + + GLEALI+W HP  GN++   F+  A    +  
Sbjct: 339 DLAAALHDGTGLYLVYQPKISLATDSLTGLEALIRWRHPTRGNLTPDAFLPAAARTRLHA 398

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++  +   ++ W+D     P  + +N++  D   ++  E +   + +   +P  +
Sbjct: 399 ELADWVIRSVTAQLVRWKDAGRAVP--VSVNLSESDFSRSDFAETLYERLLQAGLAPEML 456

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++   E+  +   E +   L  LR  G  + LDDFG   S +SYL  +P D +K +  L+
Sbjct: 457 EIECLETEKIMGKEGAVEALSALRARGFRIALDDFGAGYSNVSYLHRMPLDVIKLDRVLV 516

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  +   I  +II M K +  T++A+ +      + LT  GCD  Q  + + PL  
Sbjct: 517 RDIVTDGRSRIIATNIIRMLKELSYTVVAEGVEDRATAEALTVAGCDQAQGYYFSRPLAV 576

Query: 947 NSILKLLKERFP 958
             I +LL    P
Sbjct: 577 ADITRLLTRTLP 588


>gi|294142625|ref|YP_003558603.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293329094|dbj|BAJ03825.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 876

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 208/428 (48%), Gaps = 5/428 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T+++K  E ++ +A  D+LTG+PNR  F++RLT  +         R  ++ ID+D++K 
Sbjct: 436 VTQRRKVEEQLVHDANHDSLTGLPNRAMFMERLTQAVKHIRRHGLDRFGLLFIDLDRFKL 495

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  LV  +RR+   ++  D L R+ G+ F I+L S N++    + A  + 
Sbjct: 496 INDTLGHQQGDRFLVETSRRLRLCIRDNDTLGRIGGDEFVILLDSINSTSDAKEVAERIL 555

Query: 639 KSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  +  T +ASIG A   +    T+  +L++A+ AMY AK +G      F  
Sbjct: 556 TELSRPYELANQSFTSSASIGVAFSCNHKSDTAESLLRDADAAMYQAKSKGKGCYVIFDE 615

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                    V ++ +L  A+ N EL+L Y PI  L     V LE  + W+HP+ G +  +
Sbjct: 616 KSHQQLVKNVELEIELRQAISNQELHLSYLPIQNLKKLSTVALEPRLYWNHPQLGKVKQA 675

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   IAE   +   +++++L++          + ++  + + +NI++  L        ++
Sbjct: 676 QLNNIAEHCNLTTDLDIYLLDK-LNTDHQLLREQSLDHLPLHLNISAMHLKHKHAVRQLK 734

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + K+++ P ++ L F E   + + +        L+K+ + L L  +G+  S LS L +
Sbjct: 735 NKLKKSMFPPEQLWLFFDEKGFILDTDNHINAFELLQKLKVKLGLTGYGSAHSALSSLTF 794

Query: 876 IPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + +  +    ++   +L++    A+ +E  +    I      + L ++G D 
Sbjct: 795 LPLQGLKLDPTYTSHLNSEQHLKLLKAHYLTAQALELVVFVDGISAMQQKETLLQIGFDL 854

Query: 935 IQDSHVAS 942
            Q   +  
Sbjct: 855 GQGQALGK 862


>gi|255305814|ref|ZP_05349986.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 642

 Score =  324 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 195/425 (45%), Gaps = 14/425 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ NRQSF+  L   ++           ++ I +D +K +N+  G   GD  L  +
Sbjct: 222 DDLTGVLNRQSFIQELDLNINTEQ-----SGFIITIALDDFKFMNETFGTKNGDIALKEV 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + + + +   + + R+ G+ F I++ S+       D    + +    P  + E    + 
Sbjct: 277 GKYLIQ-IHDVNHVYRIGGDIFSIVVNSQLGIEP-DDIIRKIEERFKKPWLVEEISFNLA 334

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
            SI    +  +  T+ +++   + +++ AK             +S     + +IK  L  
Sbjct: 335 TSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKE 394

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++N    + Y PI           EAL++ +H + G I   EF+ IAE+  +I +I L 
Sbjct: 395 ALKNDGFEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLV 454

Query: 774 MLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + E++ R I S  D+     +  I +N++    +   L + +  L++K   SP++ KL  
Sbjct: 455 VFEKVCRFIAS--DEFEDLKLDNIAVNLSVVQCMQKNLADDLLYLMNKYNVSPTKFKLEI 512

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+V MG+    +  + RL  +G+   LDDFG   S ++ +  +PF  +K + SL+    
Sbjct: 513 TETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSVIKLDKSLIWSMN 572

Query: 893 EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           E       + +II +   +    +A+ +      ++L  M C+Y+Q  + + P+  +   
Sbjct: 573 EDSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFK 632

Query: 951 KLLKE 955
            LLKE
Sbjct: 633 NLLKE 637


>gi|160879202|ref|YP_001558170.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
 gi|160427868|gb|ABX41431.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
          Length = 438

 Score =  324 bits (832), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 182/435 (41%), Gaps = 14/435 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KK  E     +   NLTG+    +FL +    L    T  + +  ++ +D+ ++K +N+
Sbjct: 15  LKKMAEHNAATSRY-NLTGLYGNNAFLYKGNECL---RTHKDKKYALIRMDLYRFKTVNE 70

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G + GD +L+ +            I+  L  + F +    +     I      +  S+
Sbjct: 71  FCGRSKGDALLIHIADCFRVYETELSIVGHLRADIFALCTPYQEIEDLI-----KIVTSL 125

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              I   +    +  + G    +   +  S +   A LA+   K +  +    +      
Sbjct: 126 TEKITSFQISCKLLPAFGIC-ISEYGMDVSLLSDYANLALQTIKGKVFSFYSFYDNDLRN 184

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           S  +   I+ ++  A++  +L +   P + +   +I+G EAL++W+HP  G +  + ++ 
Sbjct: 185 SLMLEKKIENEITTALKEKQLEVHIQPKVNMKTGQIIGGEALVRWNHPHDGYLYPNLYIP 244

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           + E+   I  +++++   + + +    ++  + P+ I +N++       +  E +  L  
Sbjct: 245 VLEKSGYIVDVDIYVWTEVFQFLQKLIER-GVTPLPISLNVSRLHEYQKDFVEVLCCLSR 303

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ I L  +ES +  +       +G+L++ G S ++DDFG+  S ++ L   P D
Sbjct: 304 EYKIPPNLITLEITESALAEDSTFLFQCMGKLQEKGFSFSMDDFGSGYSSMNMLKDEPLD 363

Query: 880 TVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            VK +   +      K   ++R II M   +   +IA+ +  +   + L   GC   Q  
Sbjct: 364 EVKIDRLFLRNLGNSKSRTVIRHIIFMLAELGIDMIAEGVETKEQEQFLLECGCYKAQGY 423

Query: 939 HVASPLGFNSILKLL 953
               P+      KLL
Sbjct: 424 LYYKPMPLVDFEKLL 438


>gi|168335377|ref|ZP_02693471.1| putative signaling protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 717

 Score =  324 bits (832), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 95/528 (17%), Positives = 198/528 (37%), Gaps = 56/528 (10%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI---------RPMSNSNGDIL 510
           D+D    +LD+        + Y F       +   +             + + +   +I+
Sbjct: 199 DQDLTDKVLDAMQKGESTNVVYTFNEDTRIGEICPINFNGWSLIYILPEQVIDDYTQNIM 258

Query: 511 RYIGIAND-----------IT--EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + +              IT   Q+ +   I   A+ D LTG+PN   F      +L  
Sbjct: 259 EQVNLFTFGMVIVLVLLVFITSFAQRNTFNTIRMLAYYDELTGLPNLVKFKMEANQLLVD 318

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
              + +   +++ +DI+ +K IN++ G   G+ VL +L   +          A+++ + F
Sbjct: 319 ---NPDKDFSIVKLDINNFKAINELYGHDTGNKVLRALADVVHTDEIPNYTYAKIAVDEF 375

Query: 618 GIILISE--NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            ++  SE  ++            K     I     ++      G       +    +++ 
Sbjct: 376 LLLGPSEFFSDLSNELSLDENKFKEAVSFIPFHHIKLIY----GRYKIEEDENDIDKIIA 431

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
             ++A   AK +   +   +  +  ++      I   + +A+E+ E  +V  P    + E
Sbjct: 432 KVDIAHKTAKSKKNIYFCDYDENFKKTMLKAAEITNKMEVALEHKEFKVVLQPKYDTITE 491

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           + VG EAL++W       I   EF+ + E    I  ++ +MLE +   I  W D   + P
Sbjct: 492 QPVGAEALVRWIEDNGKMIFPDEFIPLFESNGFITKLDKYMLEEVCILIRQWID-NGITP 550

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           I I +N +   + +      ++A+I K   +   I++  +ES ++ N    + +    + 
Sbjct: 551 IPISVNFSRVHINNPNFTSEIKAIIDKYNVNTKYIEIELTESTILDNESELKTIFENFKT 610

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--MTGSTEKRIAILRSIIPMAKNI-- 909
             + + +DDFG   S L +L     D +K + S        E+   ++R+I+ M K +  
Sbjct: 611 SHLVIAMDDFGYGYSSLGFLKDFDVDIIKLDRSFFSFDADNERSRIVIRNIVKMVKELGV 670

Query: 910 --------ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                              +  +  L    CD +Q  + + P+     
Sbjct: 671 VVVAEGVE----------TKEQLDFLKSTRCDMVQGYYFSKPIPIKDF 708


>gi|162448026|ref|YP_001621158.1| putative signal transduction protein [Acholeplasma laidlawii PG-8A]
 gi|161986133|gb|ABX81782.1| predicted signal transduction protein [Acholeplasma laidlawii
           PG-8A]
          Length = 541

 Score =  324 bits (832), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 179/420 (42%), Gaps = 11/420 (2%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           ++T  PN       L   ++          +++   I     I   +   +G  VL+ ++
Sbjct: 130 SITNYPNMNKLKYDLDEFIE-----SKTPFSLLGFRIVNMNSIRQNMTYEIGTKVLIKIS 184

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + +  K  +++  +S N    I+ S ++          +    A  I + +  I +  
Sbjct: 185 EMLSDNHK--NMVYSISSNEITAIIPS-SDYSYALGIGNDLINQTADSIQIDKYRIGILL 241

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           +     +      + + LK + + +    +  G H     +         +  +L  A++
Sbjct: 242 NGSIVQYPVHIKDAHDALKKSAMILDQTTNDFGIHEFDDEMERRSKLHGELIPELLHAIK 301

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           N + +LVY P I L  E    +EAL++W HP  G IS   F+ +AEE  ++  I   ++ 
Sbjct: 302 NDQFHLVYQPKICLKGEGHKSVEALLRWHHPFKGTISPLVFIPVAEEAGLMTEITRIVIR 361

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           R+  ++   +       I   INI+ +D   +     ++ +++     PS I+L  +E  
Sbjct: 362 RVIEELKYLKSVGLE--IKASINISPRDFNHDGFTSFIKHILTDCEIDPSLIELEVTERS 419

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKR 895
           V+   +R   L    R++GI ++LDDFGT  + L +L  +P D VK + S +T  T    
Sbjct: 420 VLDKSQRVIELFKEFRQMGIKISLDDFGTGYNSLIHLVNVPMDFVKLDRSFITNITKPNY 479

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++  +I +A ++   +IA+ +  +  +  L  M CD +Q  +++ PL    +    K 
Sbjct: 480 QKMIEKLISLAHDLNIKVIAEGVETKEQLNILKSMNCDIVQGYYLSKPLEREDLEAFYKN 539


>gi|260599822|ref|YP_003212393.1| putative diguanylate cyclase [Cronobacter turicensis z3032]
 gi|260218999|emb|CBA34354.1| Protein yhjK [Cronobacter turicensis z3032]
          Length = 545

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 194/504 (38%), Gaps = 41/504 (8%)

Query: 455 YIHI-NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            +H   D     + LD+   +     Q        D++   ++       N N       
Sbjct: 75  ILHPLRDITRTLSALDA---HELAHHQLTIPRLHQDDEIGMLVRT----YNRNQQ----- 122

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +A  + E + S            LTG+PN+      L   +            ++ +  
Sbjct: 123 ALARQVDEARTSGTRF-------PLTGLPNQALLTALLEQAVA-----GGGATALLYVAC 170

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           +  ++ N+       D +  +   ++  +L    +LA++S + F II             
Sbjct: 171 EPLRESNES----QRDALQHARVDKLRSVLTPRMVLAQISQDDFAIIAHGVKTPEHAVTL 226

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +  ++  P+       T  ASIG A +   + ++S + ++A  A   A+  G N V 
Sbjct: 227 TQQLLAALNEPLESPAAAQTGGASIGVAMF-DGRQSASTLYQSAISAALDARRSGINQVA 285

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F  +S  +     +  +  A+   +  +   P + + +  IVG EAL++   P      
Sbjct: 286 FFGEASVNTQ----ESAMQSALARRQYAIWLQPQVDMRNGNIVGAEALLRERQPDGDWTL 341

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+   E   +I  +  ++LE   + +  W+       + + +N++S  LL  +L + 
Sbjct: 342 PVGFIDNIESSGLIVTVGDWVLEEACQLLARWQAHGIT--LPLSVNVSSLQLLTRDLVQT 399

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           M   + +   +P  + L  +ES  + + E +  +L  LR+ G+ + LDDFG   S LS L
Sbjct: 400 MLQRLERYAIAPGTLVLEMTESQRIDDTEAAIAILRPLREAGVRIALDDFGMGYSSLSQL 459

Query: 874 GY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
                +P D++K + S +  S     +++ +II MAK +   ++A+ I  E     L   
Sbjct: 460 QKMKALPVDSLKIDKSFI-DSLPDDDSVVSAIISMAKKLNLELVAEGIQNESQRDWLLNA 518

Query: 931 GCDYIQDSHVASPLGFNSIL-KLL 953
           G    Q       +   +     L
Sbjct: 519 GVTVGQGYLFGKAMTPAAFEDAWL 542


>gi|153829249|ref|ZP_01981916.1| GGDEF family protein [Vibrio cholerae 623-39]
 gi|148875287|gb|EDL73422.1| GGDEF family protein [Vibrio cholerae 623-39]
          Length = 655

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 192/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 203 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 258

Query: 584 GIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   +      F    AR+  + F ++L     +     F   +   + 
Sbjct: 259 GYAFGDQLLINIAELLTQRCRSFGYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 316

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 317 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 376

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 377 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 435

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 436 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 492

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 493 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 552

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 553 LYQLNHLKFCKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 612

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 613 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 648


>gi|222148194|ref|YP_002549151.1| GGDEF family protein [Agrobacterium vitis S4]
 gi|221735182|gb|ACM36145.1| GGDEF family protein [Agrobacterium vitis S4]
          Length = 674

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/453 (23%), Positives = 186/453 (41%), Gaps = 19/453 (4%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           + ++++E    +L  +  D LTG+ NR++   RL                 +++D+D +K
Sbjct: 215 QHREAIERGKALLRLSNTDYLTGVENRRAIDQRLRDNWAEWQ-SSGTGFAAILVDVDFFK 273

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIA 636
           K ND  G   GD  LV +   +   L      + R  G  F I+L    +   +   A  
Sbjct: 274 KYNDYYGHQAGDHCLVLVANALKTALLPFNASIGRYGGEEF-IVLAPAASRDDVGLLAEM 332

Query: 637 MRKSIAMPINLLERE----ITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNH 691
           +R ++     + ++       VT S+G A           +++  A+ A+Y AK  G N 
Sbjct: 333 IRNTVEKMSLVHDQRKDGINVVTVSVGAAFTRPHFGPRLEKIITEADRALYSAKANGRNC 392

Query: 692 VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           V  F  +      D   I   L +AV N+ + LVY PI+ L   +I   EAL++      
Sbjct: 393 VRLFDPNDPQSSDDSEHIAALLRVAVANNLVSLVYQPILNLTTGKIDAAEALMRLKLLDG 452

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             ++ S F+ IAE    I  + L+ L +   +I             + IN++   L    
Sbjct: 453 TPVTPSVFIPIAERTGSILDLGLWTLRQACTEI-----LVPGHAPVVSINVSPIQLKTRG 507

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +  ++  T      +    +E + M         +  L  +GI + LDDFGT  + 
Sbjct: 508 FAAAVAEILIDTGVDGQHVAFEITEGINMDRQSDILRCIKDLENMGIRIWLDDFGTGFAG 567

Query: 870 LSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           LS+L    FDTVK + S +  S   K  ++LR II + +N    I+ + I  E  ++ + 
Sbjct: 568 LSWLRLFNFDTVKIDRSFLHDSDTPKGRSMLRDIIALVRNRGHRILVEGIETEEQLELMR 627

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           +   D++Q  ++  P   +         F   +
Sbjct: 628 QFDIDHVQGFYIGRPATLDVFKSKPLNHFSQTE 660


>gi|170077561|ref|YP_001734199.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002]
 gi|169885230|gb|ACA98943.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002]
          Length = 584

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 187/414 (45%), Gaps = 5/414 (1%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R S  +    I      DD     + V+  +++ +I   L     D +  ++  R+ + L
Sbjct: 154 RFSLQETFEAIALTLQQDDAAFLPLFVVGFERFAQICADLEPQEIDTLNQAIINRLNQGL 213

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +    +  L+   F ++L            A  +  +    +     E  ++ S+G A +
Sbjct: 214 QGRGRVICLAAGEFCLVLNRAYVQADTGAIAQEILAAFEQFLTTATEEFFLSVSLGIAEY 273

Query: 664 TSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                   +++  A+ A   A++ G       +          + + +DL  A    +L 
Sbjct: 274 PQDADNLRDLVAQAQAAQRQAQNLGEPRYQFANAMTPQSYPKGLDLADDLRDAYHQHQLT 333

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y P  +L  +E+VG EAL++W+HP  G+I + E + IA+ + +++ ++ F+L +  R 
Sbjct: 334 VHYQPQCQLPGKEMVGAEALLRWEHPLRGSILTEEILAIAKPIGLLELLDQFVLTQACRQ 393

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           +  W +Q +     + +N+++         + +  L+ +   +P+ + L  +ES ++ N 
Sbjct: 394 LRRWANQDHQT-FQMAVNLSATQFNQPHFHQDLSHLLIENSLNPANLVLELTESTLLDNA 452

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAIL 899
             +   L  ++ +G+ + LDDFG   S L+YL   PFD +K + SL+    +K     ++
Sbjct: 453 PLTIRRLKAIKTLGVKIVLDDFGLGYSSLTYLKKFPFDFLKLDPSLIRNIHQKSAQQTVV 512

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           RS+I  A   +  +IA+ +  E +++ L ++ CD  Q   +  P+    + +LL
Sbjct: 513 RSLINTAHQQKRLVIAEGVENETELECLQQLNCDRAQGFLLGYPMSVPELEQLL 566


>gi|262404287|ref|ZP_06080842.1| GGDEF family protein [Vibrio sp. RC586]
 gi|262349319|gb|EEY98457.1| GGDEF family protein [Vibrio sp. RC586]
          Length = 481

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/456 (20%), Positives = 205/456 (44%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   +  L +    S  +      ++++DI+++K++N+ +
Sbjct: 29  RSADYQQFLAWHDPLTHLKNRNFIVKTLQS----SRLNRQDPVAMILLDINRFKELNNTM 84

Query: 584 GIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+ +   +      F    AR+  + F ++L   N       F   +   ++
Sbjct: 85  GYAFGDQLLIKIAALLTQRCHSFGYQCARIGADEFAVLLHPCNG--NAEFFIRNLWNDLS 142

Query: 643 MPINLLEREITVTASIGFASW-------TSSKITSSEMLKNAELAMYHAKH--RGGNHVE 693
             +   ++   ++ ++G  +        T+S + +S +L NA+LA+  AK    G     
Sbjct: 143 KLVKEYDKTKRLSIAMGVVTCQTQDFHQTNSALRASSLLNNADLALNIAKKTPDGQVVYY 202

Query: 694 SFRVSSFRSDRVMIKEDLCL---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + ++ +  + + ++ E L         + LYL Y PI+   +  + G EAL++W H + G
Sbjct: 203 TRQIENAYNKKRILAEQLQKLLLEPHQTSLYLCYQPILSRSNNRL-GCEALLRWQHQELG 261

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDII-SWRDQANMPPIFILINIASKDLLDNE 809
            I+    + +AEE  + K + ++++ ++   +   W+D  +     + IN++   L D  
Sbjct: 262 YINPQYLVEMAEEYGLGKKLGVWIMSQVYLALKTEWKDFNHRLD--VSINLS-NSLFDES 318

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   M  +        + I L  +E++ + +   S  ++ RL K+ +   LDDFGT  S 
Sbjct: 319 LPTLMADIFDNQENFLNAIILELTETMTIKDFAHSLAIINRLEKMKVRFALDDFGTGWSS 378

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++ F  +K + S +       ++   + +I+ ++  +   ++A+ +     +++L
Sbjct: 379 LYQLNHLKFSKLKIDKSFVDNMNQNPQQAIFIATIVNLSHQLGMQVVAEGVEQRAQLEQL 438

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+         +  F     +
Sbjct: 439 KQLGVDEFQGYYFSRPIIKTEFTTFCERYFSSENTS 474


>gi|190894463|ref|YP_001984756.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
 gi|190700124|gb|ACE94206.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 652]
          Length = 648

 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 188/428 (43%), Gaps = 14/428 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTGI NR++   RL      +  D+     V +ID+D +K+ ND  G   GD
Sbjct: 224 LELSNTDYLTGISNRRALDRRLDECWA-AWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGD 282

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             L  +   +  +++    ++ R  G  F +++ +E  S+ ++       +   + I   
Sbjct: 283 RCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHD 342

Query: 649 ER---EITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ER      VT SIG A            +++ A+LA+Y+AK  G N +  F  S  R D 
Sbjct: 343 ERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRPDD 402

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A++   + LVY PI  L +E    +EAL++   P    +S   F+ +AE
Sbjct: 403 NAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAE 462

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  + +E   RDI             + +N++   L        +  ++++  
Sbjct: 463 RTGAILELGKWAIETACRDI-----LMTDRMATVSVNVSPIQLRSPGFAASVGDILARCG 517

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S SR+ L  +E + M         +  LR +G+ + LDDFG   + LS+L  I F TVK
Sbjct: 518 VSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVK 577

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +   S  + + +L+ +I + +N   TI+ + +     +  L  +  D +Q  H+ 
Sbjct: 578 VDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMG 637

Query: 942 SPLGFNSI 949
            P+    +
Sbjct: 638 MPVSAERL 645


>gi|163749683|ref|ZP_02156929.1| sensory box/GGDEF domain/EAL domain protein [Shewanella benthica
           KT99]
 gi|161330496|gb|EDQ01454.1| sensory box/GGDEF domain/EAL domain protein [Shewanella benthica
           KT99]
          Length = 301

 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 149/280 (53%), Gaps = 5/280 (1%)

Query: 675 KNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A+ AM   K  G N    F          R+ +++++ LA+ N + ++VY P I +  
Sbjct: 3   AYAQTAMLSVKKNGKNSFVYFSNEMTIKAKKRLYLEQEVRLALANDDFHMVYQPKIDVKT 62

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + I G EALI+W HPK G I  +EF+ +AE+  +I  ++ ++L+++   I  W+ +    
Sbjct: 63  QRITGAEALIRWHHPKNGIIPPNEFIPVAEQSDLILKLDSYILDKVINQISRWQKEGLEV 122

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P+ I +NI S++    +L   +Q  + K     +R+++  +E ++M + E +  +L RL+
Sbjct: 123 PV-ISVNIPSREFQRGDLVASVQDTLRKYQVVGNRLEIEITERLLMDHCEDNIKILNRLK 181

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            + I +++DDFGT  S LSYL   P D +K + S +     ++    I+ +II +A  + 
Sbjct: 182 DLDIHISVDDFGTGYSSLSYLVQFPCDVLKIDKSFIDQLPQSKDNCKIVEAIIMLAHKLG 241

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            +++A+ +  E+  + L+ +GCD IQ  +   PL  N   
Sbjct: 242 KSVVAEGVETEVQYQYLSALGCDQIQGYYFYKPLNKNDFA 281


>gi|288960542|ref|YP_003450882.1| hypothetical protein AZL_a08070 [Azospirillum sp. B510]
 gi|288912850|dbj|BAI74338.1| hypothetical protein AZL_a08070 [Azospirillum sp. B510]
          Length = 614

 Score =  324 bits (831), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 199/487 (40%), Gaps = 35/487 (7%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD-------------------NLT 539
             P+  ++G  L  I + +D  + + +L      A +D                    +T
Sbjct: 123 GAPLRTADGLALGTICVMDD--QPRPALTPEEEEALRDLSAMTMAHIEARRAVGYLHPVT 180

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLT 596
            + NR  FL      L  +    +   TV+VID     ++ ++  VLG    D   +   
Sbjct: 181 SLSNRFRFLAD-LDALLAAPAGGDALGTVVVIDTAASQQFAELTRVLGQTCADAFEIDCA 239

Query: 597 RRIGELLKFPDILARLSGNRFGIILISE----NNSLKIADFAIAMRKSIAMPINLLEREI 652
           RRI   L     L  LS  RF  IL         +  +      +  ++  P       I
Sbjct: 240 RRIAAGLPVRTRLYHLSPARFACILPERPGGGAAADALPAMLGRIGAALHNPFLYDGVPI 299

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKED 710
           T +A IGF S       S E+L+ A  A + +                 +    ++++  
Sbjct: 300 TTSAGIGFVSRPERPAESVELLRAATSAAHQSLETRKPWCAYDAERDRAAHRNFLLLRSL 359

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
                 + +L++ Y P I L  +  +G EAL++W HP+ G +S +EF+ + E   +++ +
Sbjct: 360 TEAMGGDGQLHMAYQPKIDLRTDRCIGAEALLRWTHPELGPVSPAEFVPLVERTALMRPL 419

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++  +   +  WR +     + + INI+  DL   +  + + A++         I  
Sbjct: 420 TEWVIAAVLAQVAGWRRRG--IALPVSINISMLDLGAGDFADRVAAMLDSHGVRTDWIDF 477

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +M +       L  LR++GI++ +DDFGT  S LSYL  IP   VK +   +  
Sbjct: 478 EVTESALMTDRAEVDRQLLALRRMGIAVEIDDFGTGQSALSYLKDIPATAVKIDQRFIRS 537

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    ++RS I +A  +   ++A+ +      + L R GCD+ Q   ++ PL  ++
Sbjct: 538 IATERNDQIMVRSTIDLAHELGYLVVAEGVETREAYEWLRRHGCDFGQGYLMSRPLAPSA 597

Query: 949 ILKLLKE 955
           +   L  
Sbjct: 598 LEDWLAA 604


>gi|254457544|ref|ZP_05070972.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207086336|gb|EDZ63620.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 654

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 182/421 (43%), Gaps = 30/421 (7%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
               + DNLTG+ NR+   ++L   L+           +M+I+ID +++IND+ G   GD
Sbjct: 252 EHQFYFDNLTGLQNRRRLTEKLELRLNSF---------LMIINIDSFQEINDLYGDEAGD 302

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLL 648
            +L      + + +     L RL  + F  +     +  +   FA  + + I+     + 
Sbjct: 303 KLLKEFATFLHKNIPSEGALYRLHSDEFAYLCQKGIDLKEFLIFASLISERISQESFKID 362

Query: 649 -EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH---VESFRVSSFRSDR 704
            + E+ ++A+IG A  T        +L NA+ A+  AK    ++    ES  ++      
Sbjct: 363 AKSEVNLSATIGMAYGT------EMLLVNADTALVVAKKNRKHYLLYNESMAMAKEYEKN 416

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
               + L  A++ + +  ++ PI+    ++IV  E+L++        I+   F+ +A+  
Sbjct: 417 FSWTKRLKKAIDENRIVPLFQPIVDAKTQKIVKYESLMRIVDEDNTYIAPIHFLELAKRN 476

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   +   M+++         ++       + INI+ +D+L+ ++   +   +  +   
Sbjct: 477 KLYHQLTKIMIDKTF-------EKFRDVSYLVSINISVEDILNRDIYNFILEKLRNSQM- 528

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             R+     ES  + N       +  ++K    +++DDFGT  S   YL  +  D +K +
Sbjct: 529 GGRVIFEIIESEGIENFHEVIEFINEVKKYDARVSIDDFGTGYSNFEYLMKLKVDYIKID 588

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GS++      +    I ++I+  AK +    +A+ +Y +    ++  +  D+ Q  +   
Sbjct: 589 GSMIKNIDTNKNSQLITQTIVDFAKKMNIQTVAEFVYSKNIFDKVVELDVDFAQGYYFGE 648

Query: 943 P 943
           P
Sbjct: 649 P 649


>gi|325261685|ref|ZP_08128423.1| putative sensory box/GGDEF family protein [Clostridium sp. D5]
 gi|324033139|gb|EGB94416.1| putative sensory box/GGDEF family protein [Clostridium sp. D5]
          Length = 641

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 192/425 (45%), Gaps = 10/425 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNRQ   + L  +  L     +   T++V+ +  +++IN+  G   GD  L S+
Sbjct: 222 DYLTNLPNRQ---ELLNMLTLLLTRYPDRPFTLVVVSLRDFRQINNTCGQQNGDAFLKSV 278

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           ++ +  +      + R SG+ F ++   E++  KI      ++K ++    + +   T+T
Sbjct: 279 SQFL-SMAGPQQNVYRFSGDEFALLFPREDD-DKIRTCIYEIQKRMSGSWQVNDFHFTLT 336

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
           A IG    T +  T  E + + E A+  AK    G        + +    R  I + L  
Sbjct: 337 AVIGVIRHTEASQTLEETIASIEYAVMQAKTEKYGQICYCDRAMLANLERRRQIIQILKD 396

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + +    + Y PI  +     +  E+L++ +    G +  SEF+ IAEE  ++  I   
Sbjct: 397 KLTDQSFEMFYQPIYDIKTGSFLYAESLMRMNDTPVGPVYPSEFIPIAEETGLLIEITYI 456

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+++ + I    +        + +N ++      EL + +  +I+        +K+ F+
Sbjct: 457 ILKKVCQFINQLLEMQIPIKC-VHVNFSAIQFSQPELAKKVLGIINSCHTPAHTLKIEFT 515

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           ES +  NPE  R     + + GI + LDDFGT  S ++ +  +PF TVK + SL+  +  
Sbjct: 516 ESTLAENPEIVREFALEMERHGIMMGLDDFGTGYSNIATVISLPFGTVKLDRSLVYASME 575

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  +++++   K +   ++A+ +  E   + +   G D IQ  + + PL    +L+
Sbjct: 576 NPTSALAVKNLVRTFKELGMQVVAEGVETEEQRQLVIDFGIDQIQGYYYSKPLSEADLLR 635

Query: 952 LLKER 956
            L  R
Sbjct: 636 FLTGR 640


>gi|254286867|ref|ZP_04961819.1| GGDEF family protein [Vibrio cholerae AM-19226]
 gi|150423017|gb|EDN14966.1| GGDEF family protein [Vibrio cholerae AM-19226]
          Length = 655

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 87/456 (19%), Positives = 192/456 (42%), Gaps = 26/456 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S +     A+ D LT + NR   + +L         +      +++ D++++K++ND +
Sbjct: 203 RSADYQQFLAWHDPLTRLKNRNFIVKKL----KKRRRNQQEPIALILFDLNRFKELNDTM 258

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G A GD +L+++   + +  +      AR+  + F ++L     +     F   +   + 
Sbjct: 259 GYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADF--FIRNLWNDLT 316

Query: 643 MPINLLEREITVTASIGFASWTSSKIT-------SSEMLKNAELAMYHAKHRGGNHVESF 695
             +   +    ++ ++G  +  +   T       +S +L NA+LA+  AK      V  +
Sbjct: 317 KLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYY 376

Query: 696 RVSSF-RSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                   ++  I  +    +        LYL Y PI+    + + G EALI+W H ++G
Sbjct: 377 TRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRNPDRL-GCEALIRWQHSEFG 435

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERI-ARDIISWRDQANMPPIFILINIASKDLLDNE 809
            I+    + IAEE  + K +  ++++++       W+         + IN++   L D  
Sbjct: 436 YINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPYNRRLD--VSINLS-NSLFDET 492

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  +        + I L  +E++ + +  +S  ++  L K+ +   LDDFGT  S 
Sbjct: 493 LPALVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSS 552

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L ++    +K + S +    + +     + SI+ ++  +   ++A+ I     +++L
Sbjct: 553 LYQLNHLKLSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQL 612

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++G D  Q  + + P+            F     +
Sbjct: 613 KQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTS 648


>gi|240140104|ref|YP_002964581.1| putative membrane protein, diguanylate cyclase (GGDEF) domain
           [Methylobacterium extorquens AM1]
 gi|240010078|gb|ACS41304.1| putative membrane protein, diguanylate cyclase (GGDEF) domain
           [Methylobacterium extorquens AM1]
          Length = 621

 Score =  324 bits (830), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 180/449 (40%), Gaps = 14/449 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E +   +  D LTG+ NR++    L   L L+  +      V++ID+D +K  N
Sbjct: 171 EVVQRGEELFRLSTTDVLTGLANRRAIDSVL-QELWLANINSGQAFGVILIDVDFFKLYN 229

Query: 581 DVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD  L +L   +     K    + R  G  F  +  +++    +       + 
Sbjct: 230 DRYGHQRGDSCLAALGEAMRGAAEKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 289

Query: 640 SIAMPINLLERE---ITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESF 695
             A+ I    R      VT SIG A             +  A+ A+Y AK  G N    F
Sbjct: 290 VEALQIPHAARRDPLSHVTVSIGAAFSADVAEDKPERAISAADDALYVAKEEGRNRARIF 349

Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S          L  AV +  +  V+ PI+ +    +   E L++    +   IS
Sbjct: 350 NARMRHSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRVWAAETLMRLKDTQGRAIS 409

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  +  ++L +    + S  +        + +NI+++ + +      
Sbjct: 410 PETFIPVAERTGAILEMGAWILRQACDLLASEPELPI-----VSVNISARQISEPNFISS 464

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A++     +PSR+ L  +ES  +        L+ RL  IGI + LDDFGT  + L+ L
Sbjct: 465 VEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDFGTGFAGLTCL 524

Query: 874 GYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             + FD VK +   +      +   +L++II +  N     I + +     I  ++  G 
Sbjct: 525 SELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGA 584

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVK 961
           D  Q  H+  P+  + +  +L E     K
Sbjct: 585 DLFQGYHLGRPMPRSELKLMLSEYSSSSK 613


>gi|228988871|ref|ZP_04148922.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228770864|gb|EEM19378.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 345

 Score =  324 bits (830), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 162/325 (49%), Gaps = 5/325 (1%)

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +      P+ + +    ++ SIG A +       + +L++A++AMY AK +G N V
Sbjct: 1   MCEKLFCLTENPLVINKHNFYISLSIGIAVFPFGGTNVTTLLQHADIAMYSAKQKGNNAV 60

Query: 693 ESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +    S   + R+ +++DL   ++N+EL+L+Y P +     +++G EALI+W HP+ G
Sbjct: 61  CMYDETLSQKITRRLRLEQDLTNVIQNNELFLLYQPQVDSKLNKVIGAEALIRWQHPELG 120

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS  EF+ IAEE   I  I  ++L+   R +  W        + + IN+++ +    + 
Sbjct: 121 LISPYEFIPIAEETSQIIPIGKWILQEACRQLKKWHSA-GYSHLKMGINLSAIEFEQKDF 179

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + + + I +     S I L  +E + M   + + L L +L+  G+ L++DDFGT  S L
Sbjct: 180 VQTIISTIEEIGIPTSSIDLELTERIAMVEEKETLLKLKKLKLYGLHLSMDDFGTGYSSL 239

Query: 871 SYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL   P D +K     +   G++   I  +++I+ +A  ++  +IA+ +  E  ++ L 
Sbjct: 240 AYLSLYPIDNLKIPREFVNRVGTSNDGIETIKTIVALAHALKMNVIAEGVETEGQLQVLQ 299

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
              C  IQ  + + PL  +     L
Sbjct: 300 SNKCYCIQGYYYSKPLDEDEFTNFL 324


>gi|171057033|ref|YP_001789382.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170774478|gb|ACB32617.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 684

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 90/418 (21%), Positives = 180/418 (43%), Gaps = 21/418 (5%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG----IAVGDDVLVSLTRRIGEL 602
            +  +   +  +         ++++ +++  +I+  LG      + D +   LT  + + 
Sbjct: 197 LIAAIDEAVGQARQL-GAMGALLLVGLNRLAEIDTALGTAIRRDMVDAIETRLTDVLRQE 255

Query: 603 LKFP-----DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
                      L R  G  F I+    ++  +    A  + K    P+ +   E +++A+
Sbjct: 256 ADRHRLRPAAELYRWDGG-FAIVWPQISHGEQALQLARQLLKQAGEPLTVAGEEASLSAN 314

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAV 715
            G        + ++ +L+ AE A++HA+ RG    +         + +R+ ++  L  A+
Sbjct: 315 AGIGLLPHDGVEATALLEAAERALHHARSRGPGQCQFHEQDLAPRQRERLRLEARLRRAI 374

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            +    L Y P + L    + G EAL++W     G++  S F+ +AE   +I A+  ++L
Sbjct: 375 ADGSFELHYQPQVDLQTGALTGAEALLRWPDGAGGSVPPSLFIPMAEANGLIVALGDWVL 434

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +R+ R I  W D+    P  I IN+  ++L   +    +   ++    +   + +  +E+
Sbjct: 435 QRVCRQIRRWLDRGLEVP-RIAINVTPQELQQPDFVARVLRSLADAGLAGRHLCIELTEA 493

Query: 836 VVMGNPER-------SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +M +              L  LR+ G+ L +DDFGT CS L+ L  +P D +K + S +
Sbjct: 494 ALMTDTAAARAATATLSTRLLMLREAGVQLAIDDFGTGCSSLAMLRRLPMDGLKIDRSFV 553

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   AI  +II +A  +   +IA+ I  +  +  L   GCD  Q   ++  LG 
Sbjct: 554 ADVDGDGAAICAAIIGLAHTLGLRVIAEGIETDAQLAFLREQGCDEFQGHVLSPALGA 611


>gi|218510445|ref|ZP_03508323.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 641

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 188/428 (43%), Gaps = 14/428 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTGI NR++   RL      +  D+     V +ID+D +K+ ND  G   GD
Sbjct: 217 LELSNTDYLTGISNRRALDRRLDECWA-AWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGD 275

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             L  +   +  +++    ++ R  G  F +++ +E  S+ ++       +   + I   
Sbjct: 276 RCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIRMEVEFLAIAHD 335

Query: 649 ER---EITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ER      VT SIG A            +++ A+LA+Y+AK  G N +  F  S  R D 
Sbjct: 336 ERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRPDD 395

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A++   + LVY PI  L +E    +EAL++   P    +S   F+ +AE
Sbjct: 396 NAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAE 455

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  + +E   RDI             + +N++   L        +  ++++  
Sbjct: 456 RTGAILELGKWAIETACRDI-----LMTDRMATVSVNVSPIQLRSPGFAASVGDILARCG 510

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S SR+ L  +E + M         +  LR +G+ + LDDFG   + LS+L  I F TVK
Sbjct: 511 VSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVK 570

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +   S  + + +L+ +I + +N   TI+ + +     +  L  +  D +Q  H+ 
Sbjct: 571 VDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMG 630

Query: 942 SPLGFNSI 949
            P+    +
Sbjct: 631 MPVSAERL 638


>gi|327188243|gb|EGE55463.1| putative sensory box/GGDEF family protein [Rhizobium etli CNPAF512]
          Length = 663

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 105/428 (24%), Positives = 188/428 (43%), Gaps = 14/428 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTGI NR++   RL      +  D+     V +ID+D +K+ ND  G   GD
Sbjct: 239 LELSNTDYLTGISNRRALDRRLDECWA-AWKDEGRDFVVFLIDVDFFKRFNDRYGHQEGD 297

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             L  +   +  +++    ++ R  G  F +++ +E  S+ ++       +   + I   
Sbjct: 298 RCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAERIRMEVEFLAIAHD 357

Query: 649 ER---EITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ER      VT SIG A            +++ A+LA+Y+AK  G N +  F  S  R D 
Sbjct: 358 ERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIRRFDPSLPRPDD 417

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A++   + LVY PI  L +E    +EAL++   P    +S   F+ +AE
Sbjct: 418 NAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTAVSPRTFIPVAE 477

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  + +E   RDI             + +N++   L        +  ++++  
Sbjct: 478 RTGAILELGKWAIETACRDI-----LMTDRMATVSVNVSPIQLRSPGFAASVGDILARCG 532

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S SR+ L  +E + M         +  LR +G+ + LDDFG   + LS+L  I F TVK
Sbjct: 533 VSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVK 592

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +   S  + + +L+ +I + +N   TI+ + +     +  L  +  D +Q  H+ 
Sbjct: 593 VDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGFHMG 652

Query: 942 SPLGFNSI 949
            P+    +
Sbjct: 653 MPVSAERL 660


>gi|306820725|ref|ZP_07454352.1| sensory box/GGDEF family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551224|gb|EFM39188.1| sensory box/GGDEF family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 778

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 106/450 (23%), Positives = 203/450 (45%), Gaps = 19/450 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +L     D+LTGI +R    +    ILD + + +     + +ID+ ++K IN
Sbjct: 339 ELENTNHKLLNYINTDSLTGIGSRSYLTE----ILDSNESLEGTFVVLYMIDVIRFKNIN 394

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS-ENNSLKIADFAIAMRK 639
            + G  V D++L ++   + +     D++ R   N F I++     +  K+   A  +  
Sbjct: 395 YISGHIVADNILRTIAHTLRKEFC-HDMVFRTDSNEFVILIKDKSCDVDKLEKTAKKISD 453

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH----RGGNHVESF 695
           SI+  I L ++   ++ +IG +       + + +LKNAE A   AK          +   
Sbjct: 454 SISN-IELDDKIHKISVAIGCSYCD---SSYNNLLKNAEYACKMAKEDFEENKNYKLYDD 509

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +S        I+  L +   + E ++ + P   +  +E++G+EALI+W+ P  G ++  
Sbjct: 510 EISQHMLRMANIESLLKIIDYDKEFFMEFQPQFSIDGDEVLGMEALIRWNSPILGYVTPM 569

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAE    I  I  + +E+  R I  W        + + INI+ K        + + 
Sbjct: 570 EFIPIAENTGTIVKITKWTIEQSFRMIEKWN-VTYNSNLSMSINISPKYFCMYNFIKEIA 628

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             IS T   PS +    +E  ++     +     +L  +GI+++LDDFGT  S L+Y+  
Sbjct: 629 NFISTTNVKPSWLDFEITEMTMINIDSSTIDTFEKLNYLGINVSLDDFGTGYSSLNYINS 688

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              + +K    L+   +  +K   ++ +II MA +++   IA+ +  +  +  L  +GC 
Sbjct: 689 FKLNRLKIAKELIDTLSYQDKNSNLVHAIIKMADSLDLNTIAEGVETKKQLDILKDVGCG 748

Query: 934 YIQDSHVASPLGFNSILK--LLKERFPLVK 961
            IQ  +   P       +  L+  ++ L K
Sbjct: 749 QIQGFYYGKPTNGKDFEEKYLISGKYSLKK 778


>gi|109897859|ref|YP_661114.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Pseudoalteromonas atlantica T6c]
 gi|109700140|gb|ABG40060.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Pseudoalteromonas atlantica T6c]
          Length = 563

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 182/423 (43%), Gaps = 10/423 (2%)

Query: 543 NRQSFLDRLT---TILDLSATDD---NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           NR+             + +  D         ++ + I  Y  +    G  +   +L  + 
Sbjct: 138 NRRVLEGEHNPEYYAFEQAVRDQFEMQQEFCLVSLKIKDYDYLEQHAGPGIFTGLLTEIR 197

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L            +  II+    +   I     A+   +  P    +  + +  
Sbjct: 198 GLVSSELPQGSKTFAFDSGKIFIIIPDFESEEVIRRRLSAINHKLNEPNTQRKGCVKINC 257

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            +G+A   +     S +++N   A       R         +   +  ++ IK  +  A+
Sbjct: 258 VMGYALAPTDGEDPSSLMENLRCAFSVDNSDRERLCRFDSALRDLQQRQLKIKNSINGAL 317

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            +++ +L + P + L D++I   E LI+W H + G I  +EF+ ++E    I+ I  +++
Sbjct: 318 RDNQFFLHFQPKVHLPDQQIDSAEILIRWQHNELGWIPPNEFINLSELDGQIEQIGEWLI 377

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           ++  + I             + INI+S+ L ++ + E  + L+ K    PS I+L  +ES
Sbjct: 378 DQSVKKIAELHHFTPDLK-RVAINISSRQLANHSVVEQFEHLLDKYALPPSLIELEITES 436

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
            ++ + E++  +L  L+++G+S+ +DDFGT  S  +YL  +P D +K +  L+ G    +
Sbjct: 437 CLIQDFEQTLAILWELKELGVSIAMDDFGTGYSSFAYLAKLPIDVLKLDKVLVDGIEGCK 496

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              +++  +I M   +   ++A+ +  E  +  L ++ CDYIQ  + +  L      KLL
Sbjct: 497 EIQSMIGGLIAMCHELGIDVVAEGVELEGQVALLKQLNCDYIQGYYFSKALPKPEFEKLL 556

Query: 954 KER 956
            ++
Sbjct: 557 LQQ 559


>gi|311277545|ref|YP_003939776.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Enterobacter cloacae SCF1]
 gi|308746740|gb|ADO46492.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Enterobacter cloacae SCF1]
          Length = 657

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 191/433 (44%), Gaps = 14/433 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E    +A +  ++ +PN+   L  L   +            +MVI  +  +    VL
Sbjct: 222 RQHEEAGSHATRYPVSELPNKAFLLAMLDQAVAR-----KESTALMVIACETLQDTAGVL 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
                + +L++L  ++  ++    +LA+ SG  F I+      S +       +   I  
Sbjct: 277 KETQREMLLLTLVEKLRGVISPQMMLAQASGYDFAILAKGVTESWQAITLGKQVLTIINE 336

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++  +AS+G A +   ++++ ++ + A  A + A+ +G N +E F        
Sbjct: 337 RLPLQGIQLRPSASVGIAMF-HGELSAEQLYRRAFSAAFTARRKGKNQIEFFDPEEMEKA 395

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+ LA++N +  L   P + +   E+   E L++   P        + +   
Sbjct: 396 QRRLTEENDILLALDNHQFALWLQPQVNIATGEVCSAEVLLRQRQPDGSWALPCDLIDRI 455

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   ++  +  ++LE   R + +W+ +  M  + + +N+++  LL   +   M  L+++ 
Sbjct: 456 ENCGLMVTVGYWVLEESCRLLAAWQSRGIM--LPLSVNLSALQLLHENMVSDMLELMNRY 513

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P+ + L  +ES  + +P+ +  +L  LR  G+ + LDDFG   + L  L +   +P 
Sbjct: 514 RIAPNTLVLEVTESRRIDDPKAAVAILRPLRNAGVQIALDDFGMGYAGLRQLQHMKSLPV 573

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     +  +++ +II +A+++  +I+A+ +  +     L   G D  Q  
Sbjct: 574 DILKIDRVFVESL-PEDASMVAAIIQLARSLSLSIVAEGVETQSQYDWLKAAGVDCAQGF 632

Query: 939 HVASPLGFNSILK 951
             A  +   +  +
Sbjct: 633 LFARAVPLETFEQ 645


>gi|261414744|ref|YP_003248427.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371200|gb|ACX73945.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325774|gb|ADL24975.1| response regulator [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 1321

 Score =  323 bits (829), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 199/444 (44%), Gaps = 23/444 (5%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            I + I+E+         + + D LTG+PN +    R  + +           +V   DI
Sbjct: 243 AIFHRISER--------TDRYFDTLTGLPNMEYCRMRGESYVTDIRIAGGTP-SVAFFDI 293

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
              K  N+  G   G++ L++    + ++    +++ RL+ + F ++   +N   K+ + 
Sbjct: 294 VGMKLYNNANGYDKGNEFLLNFAAALKKVF-PNNLICRLANDHFTVVADMKNIEDKLCEV 352

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              ++  ++        +I++  +IG +       T  +  + A++A    K    + V 
Sbjct: 353 RKYVKSVVS--------KISMDVNIGISKIDE-FETMVDANEKAKIACKVQKSSSDSFVR 403

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +     ++  +   +   +  A++N  + + Y P++R + E   G+EAL +W  P++G 
Sbjct: 404 YYDEDLRKALVLQNYVVNHIDEAIKNGYIKVYYQPVVRTITETFCGMEALARWVDPQYGF 463

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++ + F+   EE   I  ++  ++  + +++ +  D    P + +  N++  D +  ++ 
Sbjct: 464 LNPAVFIGALEESRQIHKLDSHVINIVCKEMRAELDA-GKPIVPVSFNLSRLDFIGCDIF 522

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + ++  + K       I++  +ES++  +    R  + R R +G  + +DDFG+  S L+
Sbjct: 523 DVVERALEKYSIDREYIRVEITESIMASD-SYVRSEIQRFRLVGYEVWMDDFGSGYSSLN 581

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            L    FD +K + + ++   +    I+ S + MAKN+    +A+ +  +  +  L  +G
Sbjct: 582 TLKDYKFDELKIDMAFLSNFNDASRTIISSTVRMAKNLGLKTLAEGVETKEQMDFLKGIG 641

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C+ +Q  +   P      +K ++ 
Sbjct: 642 CEKVQGYYYGKPQPLKDTMKHMES 665



 Score = 43.4 bits (101), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 4/101 (3%)

Query: 423  IVRDRVTTTPDIATILGLA-SGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRG-RL 479
            +  D +        I              N     +   D       L++    R     
Sbjct: 954  VSGDILYVNGRALEIFDCDNVDDFRSLAGNKFEGAVLPEDYAAVDETLETLFRSRSALPS 1013

Query: 480  QYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIANDI 519
            Q  +RVR        +    R   +   G IL      +D+
Sbjct: 1014 QTTYRVRTKKGFVKRIYHVGRYFRDTPYGRILSVFVSEDDM 1054


>gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens SBW25]
          Length = 409

 Score =  323 bits (829), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 133/253 (52%), Gaps = 3/253 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++     R  ++  L  AVE+ E  L Y P + +    +  LEAL++W+ P +G +S + 
Sbjct: 145 MNVHDLARQDLENALRQAVEHHEFTLHYQPKVEVASGRLCALEALLRWERPDYGAVSPAV 204

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ I E L +I  +  +++E++ R I  W+ Q  + P+ + +N++   L++ +L   +  
Sbjct: 205 FVPILESLGLIVPVGRWVIEQVCRQIAEWQ-QGPIGPVEVSVNVSGHQLIEGDLIADIAR 263

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +    P  +++  +E  +M N + +   L RL  +G+ +++DDFGT  S L+YL   
Sbjct: 264 LLKQNQVEPHWLEVELTEGSLMENTQHTIASLQRLHTMGVKISIDDFGTGYSSLAYLRRF 323

Query: 877 PFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P DT+K + + +    S  +  AI R+II +A ++   ++A+ +  +  +  L   GCD 
Sbjct: 324 PIDTLKIDIAFIREVTSNPQDAAITRTIIELAHSLNLRVVAEGVETQAQLAFLKEAGCDQ 383

Query: 935 IQDSHVASPLGFN 947
           IQ    + PL   
Sbjct: 384 IQGYLFSRPLPVE 396


>gi|197105670|ref|YP_002131047.1| diguanylate phosphodiesterase [Phenylobacterium zucineum HLK1]
 gi|196479090|gb|ACG78618.1| diguanylate phosphodiesterase [Phenylobacterium zucineum HLK1]
          Length = 771

 Score =  323 bits (829), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 195/444 (43%), Gaps = 15/444 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    +L  A  +  TG+PNR++ L+ +   +            V+ + +D+   +   
Sbjct: 340 REREAALLHQAMHEPETGLPNRRALLEEIGRRMTGDRRR---SVAVLAVGLDRVSVLRGA 396

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G     +V+  +  RIGE    P ++A LS +  G+++ +     +     +   + + 
Sbjct: 397 IGYGRFHEVVRQVASRIGEASGEP-LVAHLSSSVLGVVISART--AEALRTRVRRVERLD 453

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-FR 701
             + + +  +     +G A +     T+  +L++A +A+  A+      +          
Sbjct: 454 PSLAIEDLPVDAFVRVGAA-YRRRGETAETLLEHASIALDRARELDRRALAFHEAKVGDP 512

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S  + +  D+   +   EL L Y P +      + G+EAL++W HP  G I+    +  A
Sbjct: 513 SLNLALMSDMRRGLAAGELALHYQPKVHAKSGRVTGVEALVRWTHPSRGPIAPDLLISTA 572

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  MI+A+  + + +   D+ +         + + +N+++  L D    E +    +  
Sbjct: 573 EETGMIRALTEWGIAQAVADLGALGA--GGHDLTVAVNVSAGLLADRTFRERLTRAAAGH 630

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               +R+ L  +ES ++ NP+ +   +   R  G+ + +DD+GT  S LSYL  I  D +
Sbjct: 631 ---ANRLCLEITESAIIRNPDEAMRAIAEFRAAGLKIAIDDYGTGLSSLSYLKLIEADEL 687

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL+     + +   IL+S + +A ++  +++A+ +     +  L  MGCD +Q   
Sbjct: 688 KLDKSLVAAVNDSARDRLILKSTVDLAHSLGMSVVAEGVETRSVLAALAAMGCDVVQGYL 747

Query: 940 VASPLGFNSILKLLKERFPLVKNT 963
           V+  L    +   L+ R    +  
Sbjct: 748 VSKALPIGELHAFLESRSRPARAA 771


>gi|218134070|ref|ZP_03462874.1| hypothetical protein BACPEC_01960 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991445|gb|EEC57451.1| hypothetical protein BACPEC_01960 [Bacteroides pectinophilus ATCC
           43243]
          Length = 566

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 116/576 (20%), Positives = 209/576 (36%), Gaps = 40/576 (6%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWD-----WDIVRDRVTTTPDIATILGLASGS 444
                     +  + E  S+A++     V       +    D +  + +  ++       
Sbjct: 20  AREIAAMLPKLLYEDEYYSVALIDISSGVLTRCRMIFSNDEDVIDRSDEYDSV------- 72

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  W+      D +     L + +        YEF           +        +
Sbjct: 73  RRTITDKWISDEEREDYEGAVD-LTTIIKNLDDNGTYEFTTHHVMGGEVLLFRYRYIYFD 131

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
               +   +    DIT  ++           D +TG  NR+ F      I          
Sbjct: 132 KEHTV--ILTTMKDITSLEE----------TDMVTGGANRKGFKRLADRIFK--GETATD 177

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  ++ ID+  +K +N+++G   GD +L    + I      P + AR S + F  ++  +
Sbjct: 178 RYALLYIDLKNFKSVNEIIGFKGGDALLRYFLKYINNSPLNPVLTARNSADHFACLVECK 237

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           N           +            + I V A  G             M   A+LA  + 
Sbjct: 238 NLDYD------RLADIFQFEFIYDGKSINVYARCGICKVDRFPADVDAMYDMAKLACNNL 291

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            +        F             I  +L  A+E +EL + Y PI     E+IV  EALI
Sbjct: 292 TNEYMQPYIVFNNDMSDLYIKQCMIHSNLPYALERNELQVFYQPIYDPYTEKIVEAEALI 351

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W  P    IS   F+   E+   I  ++ F+   + + I    +      + + +N++ 
Sbjct: 352 RWIMPNGDVISPGLFLPTLEKNGHIAKVDYFVSHTVNKFIEDRLNSGRHV-VPVTVNLSR 410

Query: 803 KDLLDNELCEGMQ-ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            D  D +    +   +I+K+   P R     +ES  M   +R+  ++GR+R +G+ L LD
Sbjct: 411 MDFYDAKTPSAIIDEIIAKSSLRPYR-MFEITESAYMSLNDRAEEMIGRMRSLGVGLLLD 469

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S    +    FD +K +   +    + + +  I+RSII MA  +   I+A+   
Sbjct: 470 DFGSGFSSYGTIANYDFDIIKLDMQFIRMLGKNKKSGKIIRSIISMAHELGVKIVAEGAE 529

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               ++ L   G DYIQ  + + P+  +   KLL E
Sbjct: 530 TREQVEFLKECGSDYIQGYYFSRPIPQSEFEKLLDE 565


>gi|255099925|ref|ZP_05328902.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 642

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 100/425 (23%), Positives = 195/425 (45%), Gaps = 14/425 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LTG+ NRQSF+  L   ++           ++ I +D +K +N+  G   GD  L  +
Sbjct: 222 DDLTGVLNRQSFIQELDLNINTEQ-----SGFIITIALDDFKFMNETFGTKNGDIALEEV 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + + + +   + + R+ G+ F I++ S+       D    + +    P  + E    + 
Sbjct: 277 GKYLIQ-IHDVNHVYRIGGDIFSIVVNSQLGIEP-DDIIRKIEERFKKPWLVEEISFNLA 334

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCL 713
            SI    +  +  T+ +++   + +++ AK             +S     + +IK  L  
Sbjct: 335 TSIAVVYYPENAETTEDVIVAIDFSIHEAKRSESRRVVYADASISEKIKKKHVIKNCLKE 394

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++N    + Y PI           EAL++ +H + G I   EF+ IAE+  +I +I L 
Sbjct: 395 ALKNDGFEVYYQPIFSNSRGRFTSAEALLRLEHKELGFIPPDEFIPIAEQTGLINSIGLV 454

Query: 774 MLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           + E++ R I S  D+     +  I +N++    +   L + +  L++K   SP++ KL  
Sbjct: 455 VFEKVCRFIAS--DEFEDLKLDNIAVNLSVVQCMQKNLADDLLYLMNKYNVSPTKFKLEI 512

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+V MG+    +  + RL  +G+   LDDFG   S ++ +  +PF  +K + SL+    
Sbjct: 513 TETVAMGSFNIIKETMERLIDLGVKFALDDFGIAYSGVTNMLSLPFSVIKLDKSLIWSMN 572

Query: 893 EKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           E       + +II +   +    +A+ +      ++L  M C+Y+Q  + + P+  +   
Sbjct: 573 EDSRHKLTVETIIALINKLNMKAVAEGVETIKCAEDLIAMECEYLQGYYFSKPVPEDVFK 632

Query: 951 KLLKE 955
            LLKE
Sbjct: 633 NLLKE 637


>gi|146294681|ref|YP_001185105.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens CN-32]
 gi|145566371|gb|ABP77306.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens CN-32]
          Length = 877

 Score =  323 bits (828), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 107/423 (25%), Positives = 198/423 (46%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL   +         +  ++ ID+D++K+
Sbjct: 438 ILQRRSMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  L+    R+   ++  D LARL G+ F I+L S N+     D +  + 
Sbjct: 498 INDTLGHLEGDRFLIETASRLRSCIRDNDTLARLGGDEFVILLDSINSINDAKDISERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           ++I+    L   E    ASIG     + K  TS  ML+NA++AMY AK  G      F  
Sbjct: 558 QTISQSYKLGSVEFNSGASIGITVSGNHKFDTSESMLRNADMAMYQAKANGKGCYVIFDD 617

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             S         + D   A++ SEL L Y PI+ L  +E+  LE+ + W+HP  G +   
Sbjct: 618 SSSQQAMQDAAFENDFRRALQQSELQLNYLPIVDLNTQEVYALESRLFWEHPLRGTVQQE 677

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +I  ++ + L  + R             + + + ++S+ +    +   ++
Sbjct: 678 QLNALAEQTNLIVELDKYTLAAVNRTYPQLLRSYGD-KLNLHVMLSSQHIKHKHVLRSLK 736

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  + SR+ L FSE  ++   E        L K+G++L +  +G+  S L+ L +
Sbjct: 737 NVLKQTQLNLSRLWLFFSEKALVQETENHINGFELLDKLGVNLGISHYGSGHSALNNLLF 796

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + ++      E+ I ++ +    A  +        I  +  I+  + +G  +
Sbjct: 797 LPIKGLKLDANITQQLVDEQHIKLISAYQKAASTLGLQTFVDGIKSQEQIRIFSSLGYQF 856

Query: 935 IQD 937
            Q 
Sbjct: 857 GQG 859


>gi|307720318|ref|YP_003891458.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978411|gb|ADN08446.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfurimonas autotrophica DSM 16294]
          Length = 642

 Score =  323 bits (828), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 183/428 (42%), Gaps = 30/428 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +    F D+LT +PNR+     +         + N    +++++ID +K+IND  
Sbjct: 233 NKTAELRKQLFIDDLTQLPNRRKLFKDIK--------NSNNNGALLILNIDDFKEINDFY 284

Query: 584 GIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G  VGD +L+   +R+  L++      ++RLSG+ F +    + +          + K I
Sbjct: 285 GQNVGDYILIEFAKRLQYLVEDEKNISISRLSGDEFALFFQHKPSYRSFVRVVNTLSKGI 344

Query: 642 AMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRV 697
                   + EI +  +IG          S EML+ A++A+  AK        + E   V
Sbjct: 345 EKMLFIHKQHEIYIRVTIGGTL------DSKEMLEKADIALKLAKEHRKYFLLYDEKLEV 398

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                + +   + L  A++   +   + PI     +E V  E LI+        +S  +F
Sbjct: 399 KRQYKENMEWVKKLKSAIKEDRIVPFFQPIFDTQTKEAVSYECLIRLVDTDGSVVSPYKF 458

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IA++  +   +   M+E+  +                 +N++  D+LD ++   +Q  
Sbjct: 459 LGIAKKSKLYPKLTKIMIEKSCQYFQ-------HIDTTFSVNLSIHDILDVDMVVYIQKT 511

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K   S ++I     E+  + N E     +  ++++G  +++DDFG+  S   ++  + 
Sbjct: 512 MQKYEVS-NKIVFEILETEGIDNYEEVSSFILNMKRLGCKISIDDFGSGYSNYEHILKLD 570

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +GSL+           ++ +I+  AK +    IA+ ++ +   +++  +  + +
Sbjct: 571 IDYIKIDGSLIKNLDTDVNVQIVVETIVDFAKKLNLITIAEFVHNQAVFEKVKALDIERV 630

Query: 936 QDSHVASP 943
           Q  ++  P
Sbjct: 631 QGFYLGEP 638


>gi|120600523|ref|YP_965097.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. W3-18-1]
 gi|120560616|gb|ABM26543.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. W3-18-1]
 gi|319427917|gb|ADV55991.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           putrefaciens 200]
          Length = 877

 Score =  323 bits (828), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 107/423 (25%), Positives = 198/423 (46%), Gaps = 5/423 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL   +         +  ++ ID+D++K+
Sbjct: 438 ILQRRSMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  L+    R+   ++  D LARL G+ F I+L S N+     D +  + 
Sbjct: 498 INDTLGHLEGDRFLIETASRLRSCIRDNDTLARLGGDEFVILLDSINSINDAKDISERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           ++I+    L   E    ASIG     + K  TS  ML+NA++AMY AK  G      F  
Sbjct: 558 QTISQSYKLGSVEFNSGASIGITVSGNHKFDTSESMLRNADMAMYQAKANGKGCYVIFDD 617

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             S         + D   A++ SEL L Y PI+ L  +E+  LE+ + W+HP  G +   
Sbjct: 618 SSSQQAMQDAAFENDFRRALQQSELQLNYLPIVDLNTQEVYALESRLFWEHPLRGTVQQE 677

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +I  ++ + L  + R             + + + ++S+ +    +   ++
Sbjct: 678 QLNALAEQTNLIVELDKYTLAAVNRTYPQLLRSYGD-KLNLHVMLSSQHIKHKHVLRSLK 736

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +T  + SR+ L FSE  ++   E        L K+G++L +  +G+  S L+ L +
Sbjct: 737 NVLKQTQLNLSRLWLFFSEKALVQETENHINGFELLDKLGVNLGISHYGSGHSALNNLLF 796

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + ++      E+ I ++ +    A  +        I  +  I+  + +G  +
Sbjct: 797 LPIKGLKLDANITQQLVDEQHIKLISAYQKAASTLGLQTFVDGIKSQEQIRIFSSLGYQF 856

Query: 935 IQD 937
            Q 
Sbjct: 857 GQG 859


>gi|329894656|ref|ZP_08270461.1| EAL domain protein [gamma proteobacterium IMCC3088]
 gi|328922912|gb|EGG30241.1| EAL domain protein [gamma proteobacterium IMCC3088]
          Length = 427

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 179/415 (43%), Gaps = 7/415 (1%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R+ F+  L   +     + +    +++ID+    +IN   G   GD +L    + +  + 
Sbjct: 10  RERFVAALELAVKEGHRNKD-NVGLLLIDLSNLARINHSYGFDRGDAILREANQALLGVT 68

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           K PD + R+ G +F  IL   NN   IA     ++  +   + L +  + +    G A  
Sbjct: 69  KLPDTVFRIGGRQFAYILPGLNNPAFIALALNRVQMVLEEALMLGDGVMPIIVKQGVAVN 128

Query: 664 TSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
               + + +ML  AE+++  AK     N  +           + ++     ++ N+   L
Sbjct: 129 KGCVLPAMDMLAAAEVSLSAAKQGKERNLEDLLGTELPSEQDIELERLFYESLHNNAFQL 188

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y P I L        EAL++W       IS    + +AE      A+  +++ R  R  
Sbjct: 189 YYQPKINLHTGRPDAAEALLRWQLDDGSFISPEYAVNLAESSGRGYALAKWVIHRAMRQA 248

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+       + + +NI +  + + +L   ++  ++    S  R  L  +E   + + E
Sbjct: 249 KEWQSS---MDVQLAVNIQASLVANPDLHGLVKDSLAIWGVSSDRFALEITEGGFIEDKE 305

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L +LR++G +L++DDFGT  S LSY  +IP D +K + S +         + +++
Sbjct: 306 SGFDNLLKLRELGTTLSIDDFGTGYSSLSYFKHIPADELKIDKSFIDHLIDGGHDLELVK 365

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +I +A     T++A+ +        L  +GCDYIQ  + + PL  ++    +++
Sbjct: 366 IMIYIAHQFGLTVVAEGVEDRATCDLLKALGCDYIQGYYFSRPLPVDAFEAWMRD 420


>gi|302670434|ref|YP_003830394.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302394907|gb|ADL33812.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 552

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 196/452 (43%), Gaps = 16/452 (3%)

Query: 514 GIANDI----TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            I  DI    TE+    + +  +A    LTG+PN   F+   T + +     +       
Sbjct: 107 AIIVDILMMHTERFLLGKFVKDSALTQYLTGLPNSGGFIAYATRLCESREIMNYDSF--- 163

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             ++  +  I+   G+  GD+++   ++++ E  +  +++A   G+ +  ++  E     
Sbjct: 164 FFNLKSFGLISRRYGLTEGDEIMKRYSQKLREFCEPDEMIAHFGGDNYTALIKKERTQKF 223

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--R 687
           +   A      +    N  + EI V A  G  +   S     +++  + +A+ +AK+   
Sbjct: 224 LDYIASIPVYGMK---NGKQEEIKVAAVTGVYAVDESLKEPGQLISRSAMALNYAKNVAN 280

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                 +  +S+    +  I++    A+ N E  +   P + +   EI+G E+L +W   
Sbjct: 281 KPYVFVNKAMSTRIYRQKQIEDRYEEALANDEFRIYLQPKVDIFTGEIIGAESLARWF-C 339

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
               +  +EF+ I E+  M+ +++L++L++    I+ W     + P+ + +N + +DL  
Sbjct: 340 NGVVLYPTEFVPILEQEGMVASLDLYVLKKTCEFILGWMKA-GIEPVPVSVNFSRRDLNY 398

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +  +I       + I++  +E+            L  L++ GI   +DDFGT  
Sbjct: 399 KHLAREIVQIIDDAGIKRNMIQIEVTETANEDERILMTNFLKNLKEKGIDTAIDDFGTGY 458

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LS L   P   +K + S +      +    +LR+II MA+++   ++ + +  +  ++
Sbjct: 459 SSLSNLRDFPVTMIKIDRSFICNEAVNDNDEIVLRNIIHMAEDLGIKVLTEGVERQDQVE 518

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            L  +GC Y+Q     +P+      K L +R 
Sbjct: 519 LLKSVGCHYVQGFLYDNPMPEGDFQKRLIKRN 550


>gi|86135819|ref|ZP_01054398.1| diguanylate cyclase, putative [Roseobacter sp. MED193]
 gi|85826693|gb|EAQ46889.1| diguanylate cyclase, putative [Roseobacter sp. MED193]
          Length = 499

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/442 (20%), Positives = 198/442 (44%), Gaps = 10/442 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
             +A +D++TG+  R+ F   +  I+   A  + LR  +  I++D++K++ +  G   GD
Sbjct: 52  RNSAPRDSVTGLMLREGFEVDMERIVRDCAETE-LRSALYYIEVDEFKELVNREGQEAGD 110

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINL 647
            ++ S   RI   L+  D +AR+  +RF + L      +       A  ++ ++  PI+L
Sbjct: 111 RIIQSCGERIASTLRNGDTVARIGDSRFAVCLTPVLQLDLETCVQMAGRIQAAVEEPISL 170

Query: 648 LEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
               +  + SIGF     +     ++    A  A+  A+  G + +  F    ++  +  
Sbjct: 171 DGTTVYASCSIGFCLNNRAPSKEYADWAAAASAALSEAQQNGPSGIRVFSADMYQRSKAR 230

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++++   A+E   +   + P I      + G EAL +W HP  G I   +F+ + EE 
Sbjct: 231 GSLRDEAAKALEAGHILPWFQPQICTDTGRVSGFEALARWMHPVRGLIPPGKFLPVLEEA 290

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +++ ++  ML      + +W       P  + +N A+++L +  L E ++  + +    
Sbjct: 291 GLMERLSQVMLYHSLTALNAWDAAGLKVPA-VGVNFATQELRNPNLAENIKWELERFDLP 349

Query: 825 PSRIKLSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             R+ +   E+V+   P+      +  L  +G  + LDDFGT  + +S +       +K 
Sbjct: 350 AGRLSVEILETVMTDRPDDVVTRNIAALSDLGCQIELDDFGTGHASISAVRRFNITRIKI 409

Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +        +  ++ +I+ MA+ +E   +A+ +    +   L+++GC ++Q   + 
Sbjct: 410 DRSFVLRADRDPDQQKLIAAILTMAERLELETLAEGVETVGEHALLSQLGCGHVQGFGIG 469

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            P+ F+  L  +      ++  
Sbjct: 470 RPMPFDQTLDWITAHEAKLQEA 491


>gi|218132407|ref|ZP_03461211.1| hypothetical protein BACPEC_00266 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992745|gb|EEC58747.1| hypothetical protein BACPEC_00266 [Bacteroides pectinophilus ATCC
           43243]
          Length = 426

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/422 (21%), Positives = 161/422 (38%), Gaps = 9/422 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LT +     FL     IL     + + R  V   D+  +K IND+ G+A G+  +  
Sbjct: 3   RDYLTNLLPLHLFLREADKIL---KNNPDCRYAVTATDLSNFKYINDLYGMAEGNRTIQE 59

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +  +         + +R   ++F  ++   + +  +       M       I      I 
Sbjct: 60  MAEKFFSGNPRCILASRPYADQFRSLIAIGDVSQDEEVAIITNMNTEFTEYIQKRYPNIY 119

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDL 711
                G      +          A  A    K         F  +     S+ + +  + 
Sbjct: 120 FHVYTGLYIIEDNSEGIRSACDKAHFAKKCFKGNLSVTCGIFDSNAYKDSSNVMRLTHEF 179

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A E   +Y+ Y P       E +G EAL +        IS  EF+ + E   +I   +
Sbjct: 180 QSARERDSVYVYYQPKCSASTGEFIGAEALGRIADKDGNIISPGEFIPVLERTGIIGDFD 239

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             ++E+   DI  W D        + +NI+    L   L + + AL  K       I+L 
Sbjct: 240 DIIMEKTFADIRRWIDNGGNVK-PVSLNISRIQFLKPGLIDKILALQKKYDIPSRLIELE 298

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  + + +        LR+ G ++ +DDFG+  S LS +  +P DT+K + S     
Sbjct: 299 ITETTFIESVDFIDDTARELRRHGFTIDVDDFGSGYSSLSLIATLPADTIKLDCSFARQC 358

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +      +L  II + ++I   II + I  E + + +  +GCD IQ  +   P+  +S 
Sbjct: 359 LDNDKGVILLSGIINILRSIGFDIICEGIETERERQRIMELGCDKIQGYYYDRPMPSSSF 418

Query: 950 LK 951
            +
Sbjct: 419 EE 420


>gi|163852769|ref|YP_001640812.1| diguanylate cyclase [Methylobacterium extorquens PA1]
 gi|163664374|gb|ABY31741.1| diguanylate cyclase [Methylobacterium extorquens PA1]
          Length = 667

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 102/444 (22%), Positives = 179/444 (40%), Gaps = 14/444 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  E +   +  D LTG+ NR++    L   L L+  +      V++ID+D +K  N
Sbjct: 217 EVVQRGEELFRLSTTDVLTGLANRRAIDSVL-QELWLANVNSGQAFGVILIDVDFFKLYN 275

Query: 581 DVLGIAVGDDVLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           D  G   GD  L +L   +     K    + R  G  F  +  +++    +       + 
Sbjct: 276 DRYGHQRGDSCLAALGEAMRGAADKRRYAIGRFGGEEFAALFQADSAEQVLEFAEEVRQA 335

Query: 640 SIAMPINLLERE---ITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESF 695
             A+ I    R      VT SIG A             +  A+ A+Y AK  G N    F
Sbjct: 336 VEALQIPHAARRDPLSHVTVSIGAAFSADVADDKPERAISAADDALYVAKEEGRNRARIF 395

Query: 696 RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S          L  AV +  +  V+ PI+ +    I   E L++    +   IS
Sbjct: 396 NARMRHSTESDDLNAEMLRAAVTDGRISAVFQPIVDVSSGRIWAAETLMRLKDTQGRAIS 455

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AE    I  +  ++L +    + S  +        + +NI+++ + +      
Sbjct: 456 PETFIPVAERTGAILEMGAWILRQACDLLASEPELPI-----VSVNISARQISEPNFISS 510

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++A++     +PSR+ L  +ES  +        L+ RL  IGI + LDDFGT  + L+ L
Sbjct: 511 VEAIVRAAGIAPSRLALEITESGEISGNPEVAQLMDRLNTIGIRVWLDDFGTGFAGLTCL 570

Query: 874 GYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             + FD VK +   +      +   +L++II +  N     I + +     I  ++  G 
Sbjct: 571 SELRFDMVKIDRFFVQSCDTPRGAKLLKNIIDLVNNCAQRPIVEGVEEAWQIDLVSSFGA 630

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D  Q  H+  P+  + +  +L E 
Sbjct: 631 DLFQGYHLGRPMPRSELKLMLSEY 654


>gi|163784760|ref|ZP_02179562.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879970|gb|EDP73672.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 610

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 186/380 (48%), Gaps = 11/380 (2%)

Query: 516 ANDITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              I+E   + ++ +    + D LTG+ NR  F  ++   +      +  +  +++ D D
Sbjct: 237 IRLISEHINQMIKKLRNYIYYDYLTGVYNRYFFEKKVKAEIS-----NKNKFALVIFDTD 291

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIAD 632
            +K+IND+ G  +GD +L +   R+   +     + R  G+ F I +  +   +  ++  
Sbjct: 292 NFKEINDLFGHIIGDKLLQNYAHRLKNFIGEKGFVGRFGGDEFLIYIDGKYFESDSQLIK 351

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               + + +  P  + + ++ +T++ G + +     T  ++LK A+++++H K  G N  
Sbjct: 352 LVNQIIEYLDKPFFIEDYKLDITSTAGISKYPEHGKTYEDLLKIADISLFHGKKIGKNLA 411

Query: 693 ESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                           +   +   +EN E +LVY PI  + + +IVG+EAL++W+  K+G
Sbjct: 412 ILADNDIIVKSLRKAQLTSFIKSGIENKEFFLVYQPIFSIKNLKIVGVEALLRWNSKKFG 471

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            IS +EF+ I EE  +IK +  ++ + + +    W +Q  +  I I +N+  + +L+   
Sbjct: 472 FISPAEFIPILEETGLIKDVGKWIFKEVLQQAEIWENQ-GIEDIKINVNVDIQQILEANF 530

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E ++  I    +S  ++ +  +ES  M  P+     L  LR++GI +++DDFGT  S L
Sbjct: 531 TEFVKDEILSKNFSKVKLGIEITESEAMQYPDLIIDKLKTLRELGIKISIDDFGTGNSSL 590

Query: 871 SYLGYIPFDTVKFNGSLMTG 890
           SYL  +  D +K + S +  
Sbjct: 591 SYLKIMSIDYLKIDKSFIDD 610


>gi|74026507|gb|AAZ94413.1| hypothetical protein [Bacillus pseudofirmus]
          Length = 265

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 73/258 (28%), Positives = 133/258 (51%), Gaps = 4/258 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              S    ++ DL  A++  E  L Y P   L   ++ G E L++W HP  G IS  EF+
Sbjct: 5   QEFSRYFHVENDLRKAIDRGEFALYYQPQFCLESGDVCGEEVLVRWKHPIEGTISPGEFI 64

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAEE  +I  I  ++L    R    W ++   P + + +N++ K  L + +   ++ ++
Sbjct: 65  SIAEETGLIIPIGEWILREACRQKAKWINE-GYPKVPMSVNLSLKQFLQHNIVHTIEKIL 123

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +T   P  + L  +ESV + + +R+  +L +L K+G+ ++LDDFGT  S L Y+G +P 
Sbjct: 124 KETKLPPEYLDLEITESVTV-DLDRTLDILNQLIKVGVRISLDDFGTGYSSLQYVGQLPV 182

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +    + +   AI+  II + +++E  +IA+ +  +  +  L + GCD +Q
Sbjct: 183 HELKIDQSFVKKIGKGKEGEAIISMIIHLGRSLELKVIAEGVETKEQLDFLQKQGCDLVQ 242

Query: 937 DSHVASPLGFNSILKLLK 954
             + A PL      + L+
Sbjct: 243 GYYYAKPLSTEEYEQYLR 260


>gi|313679427|ref|YP_004057166.1| diguanylate cyclase/phosphodiesterase [Oceanithermus profundus DSM
           14977]
 gi|313152142|gb|ADR35993.1| diguanylate cyclase/phosphodiesterase [Oceanithermus profundus DSM
           14977]
          Length = 742

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 185/443 (41%), Gaps = 33/443 (7%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  S E +   +F D LTG+ NR+ F++ L T L L+A  +     V ++D+D +K  ND
Sbjct: 316 RLLSQERLRYLSFHDPLTGLLNRRGFMEHLRTALPLAAR-ERWNLAVAMVDMDDFKLYND 374

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD +L    R + E L+  D++AR+ G+ F ++L +                  
Sbjct: 375 RFGHLAGDRLLREAARVMKEHLRASDVVARIGGDEFALLLQNTTIEGAGFALERIREAMA 434

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
            MP            SIG A +        E+L++A+LA+Y +K +      +  +    
Sbjct: 435 KMPYA--------GVSIGVAFFPDDAQEPEELLRSADLALYDSKTQKRVVFVAPGLRERF 486

Query: 702 SDRVMIKEDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R+ ++  +  A+ + +     L + P   +    +   EAL+++  P         F 
Sbjct: 487 KRRLRLESAIEAALRSPDLPGFSLHFQPRYDVDRRRVSAFEALLRFHGPAGPVSPLEVFA 546

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           + AE    +  +  F+L        + RD      + + +N+    LL  EL + +QA +
Sbjct: 547 IAAER-GWMMDLTRFVLTEALGFYAAHRDCIPA-GVRVGVNVPPA-LLVPELLDLVQATL 603

Query: 819 SKTLYSP-------SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
            +    P       +          V+ + +    +L  L ++G+ L LDDFG+  S L 
Sbjct: 604 EEHGLGPEVLELEVTE--------EVIAHDDTPWAVLEELGRLGVRLALDDFGSGFSNLG 655

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            L  +P   +K + S +   T         +R I+ M  ++   ++A+ +  +  ++ + 
Sbjct: 656 RLVTLPIQVLKLDRSFVELLTTHNERGVPAVRGIVAMGLDMGLVVVAEGVESDEALERVR 715

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
             G   +Q   ++ P+    +L+
Sbjct: 716 AAGVREVQGYVLSRPVPPRELLE 738


>gi|15805776|ref|NP_294474.1| sensory box/GGDEF family protein [Deinococcus radiodurans R1]
 gi|6458457|gb|AAF10326.1|AE001930_7 sensory box/GGDEF family protein [Deinococcus radiodurans R1]
          Length = 939

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 127/620 (20%), Positives = 238/620 (38%), Gaps = 53/620 (8%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
                GG + +++    TV   +LA G     +  D     L +  SG      D     
Sbjct: 342 IALARGGQLPLLVRRSDTVPGLLLAEGVRPAAVSEDNGAARL-LHLSGAATILLDPQGRV 400

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIH---------INDRDNFRTILDSFVGYRRGR 478
              +   A +LG    ++       LP +H                   L +        
Sbjct: 401 QLISEPAARLLGFDPHNIALTGL-PLPRLHQQLGIKLHTPQGNPLTVPPLSAL----TLP 455

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR-------------YIGIANDITEQKKS 525
              E            + I +  +  S G                  +    D+T  +++
Sbjct: 456 HNGEVLAVLPGGVTRHLEISLSALPGS-GQSTGSSAASPGRSAAPELLLSLRDVTTLRRA 514

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A  D LTG+ NR      L                V  +DID +  +N  L  
Sbjct: 515 QAKLRHDASHDGLTGLLNRSGLRAALGQATAA-----QTGGMVACLDIDGFGGLNAALSR 569

Query: 586 AVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             GD +L+ +  R+ +L +      ARL+ + F + L         A     ++ ++  P
Sbjct: 570 TAGDLLLIQVAARLNDLAELEGGQAARLADDTFAVYLPQLG----AAVGGQKLQAALREP 625

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-- 702
           +   +R + VT S+G A          + L +AE+A+ HA+ +G   +  F         
Sbjct: 626 LRTGKRLVPVTFSLGAAP--LLAAAPEQALADAEVALQHARRQGRGQLTVFEPDMRAEEA 683

Query: 703 DRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +++ L   ++      +  L+Y P + L D  ++G EAL++W HP+ GN+S + F+
Sbjct: 684 QTFELEDQLRAVLDRGLQHEQFSLLYQPAVSLKDGRVLGAEALLRWTHPELGNVSPARFL 743

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A+   +I +I  +++    +     RD          +N++ ++L      E +  LI
Sbjct: 744 PLAQRSDLITSIGEWVVREAVQGRTQLRDATGQRNWRTSVNLSLEELRREGAIERLLPLI 803

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           ++    PS + +  S S ++ + E +  LL  LR  G  L +DDFG   S L+ L   P 
Sbjct: 804 TR----PSALDIEVSASSLLDHSEETLGLLDALRARGARLIVDDFGDGASSLTALTQFPL 859

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK + +L T     +K + +++  + +A ++  T+ A  +     +  L  +GCD  Q
Sbjct: 860 YGVKLHPTLTTRLPGDQKSLKLVQGTVSLAHSLGLTVTAVGVETYAQLDMLRDLGCDAAQ 919

Query: 937 DSHVASPLGFNSILKLLKER 956
              +  PL    ++  ++ R
Sbjct: 920 GYALTPPLSAGDLVTWVQGR 939


>gi|83643669|ref|YP_432104.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631712|gb|ABC27679.1| predicted signal transduction protein containing sensor and EAL
           domains [Hahella chejuensis KCTC 2396]
          Length = 872

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/440 (22%), Positives = 189/440 (42%), Gaps = 21/440 (4%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A    +T +P+R      +   +              +I + +Y+ I+  LG      
Sbjct: 418 YEATHSQVTELPSRAYLERFIADRIS---AQPGSAFMACLISLQRYRDIDRTLGNENARQ 474

Query: 591 VLVSLTRRIGELLKFPD-------------ILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++  +  ++ E ++  D              +A L      ++L    NS        A+
Sbjct: 475 LMYQIAHQLNEFVETLDGVISIEHSVQGPLYVASLDEITLAMLLEQRRNSE-AEQEVQAL 533

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFR 696
            K +   I      + +    G A++     ++  +L+ A +A+    H  G   V   +
Sbjct: 534 SKFLGQRIQFGYLSLDLDPRFGLAAYPHHTDSAEGLLRLARIALDATHHSKGCAAVYQSQ 593

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            + +   R+ +  +L  A++ ++L L + P + +  + I G EALI+W H  +G I   E
Sbjct: 594 YNPYSERRLTLLAELDKAIDANKLCLHFQPQLDIEADVITGFEALIRWTHDDFGQIFPDE 653

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE+   I  + L+++ +    +           I I +NI+  DL ++   E +Q 
Sbjct: 654 FIPLAEQAGHITKLTLWVIRQALLHLQELSQAGYD-DIGIAVNISMVDLENDSFIEKVQR 712

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+  +  +P+R+ L  +E+ +M +PE +   L  LR  G+ + LDDFG   S LSY+  +
Sbjct: 713 LLEGSSVAPARLTLELTETALMQDPEGALSALQALRAAGVLIALDDFGVGYSSLSYIKKL 772

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   VK + SL++          + R+ I M+  +    IA+ +     +  L  M C Y
Sbjct: 773 PLHKVKIDRSLVSDLASEPDASVVARTAIDMSHGLGYEAIAEGVEDIEALNLLRSMHCRY 832

Query: 935 IQDSHVASPLGFNSILKLLK 954
           IQ   +A P+ +   ++ L+
Sbjct: 833 IQGYWLARPMPWEFAIEWLR 852



 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 101/355 (28%), Gaps = 8/355 (2%)

Query: 48  SITRIYVNQGEDFQVFTAADIDGISRRI---EVSASSIRHRGDWAVFALANTSDSQLERL 104
            I   + +   +  +                  +         W  F LAN +D    RL
Sbjct: 38  PIIAYWRDASGEETIEGLRGHTERPWETIAANHANFGYTKDSFWFRFLLANDTDKSKRRL 97

Query: 105 IVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIME 164
           +VV    L    F     G     S T        R       ++ + + PG    F+  
Sbjct: 98  LVVRAPHLDDVLFAELVNGEVVRRSQTGEYYPFSQRETLHPLYIYPVELEPGESHEFLFR 157

Query: 165 ISTPN--LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTF 222
           I +       + +W+ + +    +   L  G+  G    +  F    ++  R  M +   
Sbjct: 158 IQSEGSLSLPLEIWKEDAFYLRNDREALTHGLYYGFLLFVVTFNLFIFLALREPMYLFYV 217

Query: 223 AMAW-VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
                ++L   ++       L              S   ++ S   F   +L       +
Sbjct: 218 IFTLMILLVQATLQGRTFQFLWPNVPQLQNFTILVSVPLIALSAAEFSRRFLKLPVMAPR 277

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIV-LYYTYFIIYHGMKGYERAVLL 340
           + Y+               F  P   +      L  +  L       Y   KG   A L 
Sbjct: 278 LNYLLIGVSIAGVASIIGVFAAPPHLSKGVSTALVLVTDLILVIIGPYLWWKGVRSARLF 337

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQ-PALVGGLVLIVILIGFTVIQHVLATG 394
             AW+++ +      + +   + ++++       G     +L+   +++ +    
Sbjct: 338 TCAWLMLELGASLTLLLVLGVVPHNLLTAYGFEIGSAAEAVLLSVAIVERIYVER 392


>gi|268609321|ref|ZP_06143048.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Ruminococcus flavefaciens
           FD-1]
          Length = 629

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 179/424 (42%), Gaps = 15/424 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTGI N   F      +       D      + IDI+ +K  N+  G   G+++L   
Sbjct: 206 DELTGIHNMVYFRSEANKLFSD-KEADKDDLVFLFIDIENFKSYNETYGFHKGNELLSQT 264

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I        I++R S + F ++    +  LKI   +  ++          + E+ + 
Sbjct: 265 AHIIDRYF-SDSIVSRFSDDHFVVLTHGGDCILKIDKISNELKNL--------QGEVHLE 315

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
              G   +    I +S     A  A    K   G     +  S     +    I  ++ L
Sbjct: 316 LKCGAYKYDERTIDTSIACDRARFACNSIKKHYGETFRIYDKSLEDIFQQKQYIVNNIDL 375

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+ N  + + Y P+I     +I GLEAL +W  PK+G +S S+F+   EE   I  ++ +
Sbjct: 376 AIANKYIQVYYQPVISTTTGKICGLEALARWHDPKYGLLSPSQFITTLEEYRQIHKLDKY 435

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           M+E++  D +       +    + IN +  D     + + +  ++ K     S I +  +
Sbjct: 436 MIEQVCLDYVE-AKTNRLSFAPVSINFSRLDFELCHIADHLNRILEKYGVPKSFIDIEIT 494

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
           ES ++   +     +  LRKIG S+ LDDFG+  S L+ L    FD +K +   +     
Sbjct: 495 ESALIDQLDFLPDAIAHLRKIGYSVWLDDFGSGYSSLNVLKDYAFDVLKIDMKFLNSFDY 554

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            EK   ILR+I+ ++K +    +++ +      + L  +GCD +Q    + P+  + + +
Sbjct: 555 NEKARPILRTIVSLSKQLNMISLSEGVETREQFEFLKEIGCDKVQGYLFSKPVMLSELRE 614

Query: 952 LLKE 955
            + +
Sbjct: 615 KIAK 618


>gi|113954671|ref|YP_731859.1| sensory box/GGDEF family protein [Synechococcus sp. CC9311]
 gi|113882022|gb|ABI46980.1| sensory box/GGDEF family protein [Synechococcus sp. CC9311]
          Length = 583

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/536 (22%), Positives = 232/536 (43%), Gaps = 31/536 (5%)

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR---GRLQYEFRVRAADNQFHWMI 496
           L SGS    ++++L  +H +DR+   ++    +             FR  + + ++ W  
Sbjct: 44  LESGSALFLLQSFLQDVHPDDREYMSSVAQRLLESDGFGNDITSRPFRGVSPEGRWSWYE 103

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           +R+      +  +L   G+  ++  Q+KS   +  +   D LTG+ N +S    L  I+ 
Sbjct: 104 VRMTVTRQKD--LLICEGLMVNVDVQQKSSLSLQSSLLCDQLTGLGNLKSAYALLKDIIS 161

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                  L  +++ +D+  + ++N  LG A GD++L +    + + L+  D L R   + 
Sbjct: 162 T-----GLPVSLVWLDLKGFGRLNTYLGRAKGDEILRATADVLKDWLQDGDYLIRPDSDE 216

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT-VTASIGFASWTSSKITSSEMLK 675
           F IIL    +S      A+ + + +   + L       +    G +S+         +L 
Sbjct: 217 FLIILNG-RDSKAAHSAALHLVEHLPSLLELHVDGFYGLGFHAGISSFPDHGDNEDSILS 275

Query: 676 NAELAMYHAKHRG----GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
           NA  A+  A+          +    +++  ++ + ++  L  AV N E  LV+ P   + 
Sbjct: 276 NAASALDQARRINSVSEPIVIFGDDITTRTAELLNLELSLRQAVVNDEFRLVFQPQWNV- 334

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             +IVG EAL++WD  + G +S   F+ +AE+   I  I  +++E   R + S+    + 
Sbjct: 335 SGQIVGAEALLRWDSARLGPVSPGVFIPLAEQTGQIHLIGEWVIEAACRALSSFHRGVDK 394

Query: 792 PPIFILINIASKDLLDN--ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
            P  + INI++  L     +L E +   + +   SP  I +  +ES  + +   +   L 
Sbjct: 395 IP-PLSINISASQLSSRQYDLVETLLVNLQRFRVSPKSIHVEITESGFLDDL--AIRRLN 451

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---------AILR 900
            L + GI L +DDFGT  + LS L  +P  ++K + S +                 AIL+
Sbjct: 452 GLHEAGICLHIDDFGTGFASLSSLLSLPIYSLKLDQSFVAQLHSFDSSNLESVPSFAILK 511

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + + ++ +I    I + +        L RMG  + Q  + + PL F     LL  +
Sbjct: 512 ASLALSSSIGAEAIVEGVEDFRQFDALRRMGYQFFQGYYFSRPLEFADYCDLLGNQ 567


>gi|254491075|ref|ZP_05104256.1| hypothetical protein MDMS009_1407 [Methylophaga thiooxidans DMS010]
 gi|224463588|gb|EEF79856.1| hypothetical protein MDMS009_1407 [Methylophaga thiooxydans DMS010]
          Length = 698

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 108/566 (19%), Positives = 219/566 (38%), Gaps = 19/566 (3%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
                    + +    +R    +  S D V  +      +        I G         
Sbjct: 128 MRRLGRRNERALRESEKRSRALLESSRDAV-AYMHEGMHIYVNQAYLRIFGYEEAEDIDG 186

Query: 449 IRNWLPYIHINDRDNFRTILDSFVG-YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           +   L  +  +D   F+ +   F        +    +   AD       I         G
Sbjct: 187 LP-MLDLVSADDHHKFKAVFREFSEKTESDPVDIVAQCVRADGTGFNAKIEFSHSR-VEG 244

Query: 508 DILRYIGIANDITEQKKSLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           +    + I +D  +     +  L      D LTG+ NR  F+D L   +  +    N   
Sbjct: 245 EDCTQVVIHDDAAQAHTVDDSQLKLLRDHDLLTGLYNRARFVDELEKTVFQAVE-GNGNA 303

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ + +D ++ I + +G+   D ++ S+   + + LK  ++LAR     F +I+   ++
Sbjct: 304 QLLYLVLDDFQSIKEQVGLGTSDIIIKSVAELLRKHLKDSEVLARYGDQVFTLIIPGHDD 363

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                   I  +       ++  + I +  SIG A    +   +  +L+NA+ A   A+H
Sbjct: 364 VKIDERAEIYQQAVRDFVSHVNGKSIDIKCSIGIARINENHSAAGTVLENADKACTQAQH 423

Query: 687 RGGNHVESFR-----VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            GG+ +  F+                K+ L   ++  +  L Y PI+ L  +E    E L
Sbjct: 424 AGGDQIARFQLAQGSEQEETESSEQWKKRLQKGLQEDKFLLHYQPIVSLHGQEQELYEVL 483

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++    +   I + EF+  A  L M+  I+ +++ +    +   R Q      FI   ++
Sbjct: 484 LRLQLIENRLIQAGEFIEHAISLEMMADIDKWVIRKAVEVLSEHRHQFPRTRFFIK--LS 541

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            + L  ++  + + A +     + + +    SE++ + N E++R ++ +L++IG    L+
Sbjct: 542 EQSLHTDDFVDWLCATLDAHNLNGNALVFEISETMALDNLEQARGVVAKLKQIGCEFGLE 601

Query: 862 DFGTK--CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
            FG+    S    L  +  D +K NG+ +       +  A +++II M K      IA+ 
Sbjct: 602 HFGSGLDFSN--SLNALNVDYLKINGAFVENMARDTENQAAVKAIIEMTKQANKHSIAEF 659

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASP 943
           +     +  L R+G DY Q  ++  P
Sbjct: 660 VSDANSLALLWRLGVDYAQGYYIHEP 685


>gi|293400274|ref|ZP_06644420.1| putative GGDEF domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306674|gb|EFE47917.1| putative GGDEF domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 914

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 190/439 (43%), Gaps = 27/439 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++ ++ + +   ++ D LT   NR  +++ +  I        +    V+ +DI+  K IN
Sbjct: 488 KRDQAEKKLAHLSYHDELTSFYNRNRYIEDVKHI-----AHSHQSVGVVYLDINGLKDIN 542

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS---LKIADFAIAM 637
           D  G A GD+V++     +  +      + R+ G+ F II  + +      ++ +   ++
Sbjct: 543 DKYGHARGDEVIIEAALHMRRVF-PQADIYRIGGDEFVIISTNLSQDVFQRQVRELRGSI 601

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH---RGGNHVES 694
           +    +   L  R            W+      ++ +  A+  MY  K    R   + + 
Sbjct: 602 KDQEMLKFALGSR------------WSPQADGINDFIAEADACMYEDKRVFYRNRQNTKR 649

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           +R  +     +     L   +     ++     IR    E  G EALI+++      IS 
Sbjct: 650 YRHYNDELLHLSDPNTLQAEIAMHHFHVYLQSKIRSTSGEAFGAEALIRYEDRDGTIISP 709

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +FM +  E  +I  I+ ++ ERI   I  W D      + I +N++ + ++   L + +
Sbjct: 710 GDFMPLLAEHHLISVIDYYIFERICMLIREWLDAYATI-VPISVNLSRQTMIKATLLQDL 768

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A+  K   +PS +++  SE     + +    L+  L+  G  ++LDDFGT+ + L+ L 
Sbjct: 769 LAICKKYEVAPSYLEIEISEHGDHLSDKDLITLIHELKHHGFRISLDDFGTEYANLALLS 828

Query: 875 YIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PFD +K + S++    S  +   I+ +I+ + + +  TIIA+ I     ++ LT  G 
Sbjct: 829 AAPFDVLKLDKSIINELDSNPRTQKIVTAIMKLCEELHITIIAEGIETLQQLQTLTSCGV 888

Query: 933 DYIQDSHVASPLGFNSILK 951
             +Q  + + PL  +   +
Sbjct: 889 TLVQGFYYSIPLPVDEYQR 907


>gi|313682075|ref|YP_004059813.1| diguanylate cyclase/phosphodiesterase with gaf sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154935|gb|ADR33613.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 597

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 174/429 (40%), Gaps = 32/429 (7%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             + +L  A+ D LT +PNRQ  +D +                 ++ +ID +K++ND  G
Sbjct: 195 HQQKLLSLAYFDQLTNLPNRQKIVDDMEE---------KKPKACVLFNIDDFKEVNDFFG 245

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           I  GD +L  + +   E+   P    R  G+ F I+L  +     +      +       
Sbjct: 246 IDAGDAILQEVGKWFNEMNFSP---YRTGGDEFAILLYDDLTWKTLKHRITTLMSLFEEK 302

Query: 645 -INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSF 700
              + +  +++  ++G A          ++L  A++A++ AK +      + +   +   
Sbjct: 303 VFVVGDEVLSIRMTVGAAIGEG------KLLTRADIALHRAKEKKVSLALYEQEENIEET 356

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               + +   +  A+ N  +   Y PI+ +    I   E L++        I   +F+ I
Sbjct: 357 YRTNIAMTATIRKALANQRIICHYQPIVNMATGNIDKYETLVRMVDENGELIPPMKFLPI 416

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A++  +   I   ++ +      +  +Q         IN++  D+ D    + +   I +
Sbjct: 417 AKKTKLYPQITREVVYQACTLFSNRSEQF-------SINLSDSDIRDPHTVQEIINTIIQ 469

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  + SR+     ES  + N +     + +++ +G  + +DDFGT  S    +  +  D 
Sbjct: 470 TD-TASRVVFEILESEGIENYDEVARFITQVKALGAKIAIDDFGTGYSNFENILKLGVDY 528

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GSL++G    E+   I+ +II  A  I    IA+ +  E   + +   G DY Q  
Sbjct: 529 IKIDGSLISGISSNERHRIIVDTIIDFADKIGAETIAEFVSDESIYRSIKIHGIDYAQGY 588

Query: 939 HVASPLGFN 947
           +   P    
Sbjct: 589 YTGKPEPLE 597


>gi|257469181|ref|ZP_05633275.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063429|ref|ZP_07927914.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689105|gb|EFS25940.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 744

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 190/432 (43%), Gaps = 18/432 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   AF DN+T   +   F+  L+ IL     +   +  ++  DI K+K IN   G   
Sbjct: 323 QLENIAFIDNVTKGDSYNKFIVDLSQILLN---NPEKKYHILKFDIKKFKYINSFYGFEF 379

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           G+ VL  + +   E L   + +AR+S + F I+L          + +I     I  P+N 
Sbjct: 380 GNKVLTDIYKNNKEKLTTNERIARISADNFVILL---------EELSIERLNDILEPLNY 430

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            E   T+  S G  S        + M+  A +A    K      +  +            
Sbjct: 431 DEGA-TIYFSGGLYSINDIFENVNLMVDKANIAANSVKEIMNKTLGFYSEEFNTQILKNE 489

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +K+ +  A++  EL   Y P + +   E+VG EAL +W   +   IS  EF+ I E+  
Sbjct: 490 KLKKLIREAIDKKELMPYYQPKVNIHTNELVGAEALARWKTKEGKLISPFEFIPICEKTG 549

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           MI  +++ + E++ + + S  D+       I +N +   + D    + +   + K     
Sbjct: 550 MIVELDMIIFEKVLKFLKSNLDKRIECT-PISVNFSKLHINDKNFFKNIMDKLDKYNIPT 608

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S I++  +E+V+  N +  +  +  L K+ + +++DDFGT  S L+ L  IP D +K + 
Sbjct: 609 SLIEIEMTETVIFDNYKLIKNFIRELHKVRLMISMDDFGTGYSSLNMLKDIPIDILKIDK 668

Query: 886 SLM-TGSTEKRIAIL-RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +  GS  +R  I+  +I+ +A+ +   ++ + +    +I+ +   GC   Q  + A P
Sbjct: 669 GFLDKGSNLQRRNIIFSAIVDLAQKLGIKVVVEGVETIENIELMKNSGCYIAQGYYYAKP 728

Query: 944 LGFNSILKLLKE 955
           +      K+ +E
Sbjct: 729 MDEEEFQKIYEE 740


>gi|309776159|ref|ZP_07671150.1| putative GGDEF family protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916110|gb|EFP61859.1| putative GGDEF family protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 588

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 178/435 (40%), Gaps = 12/435 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +   +  D +TGI N + F D+   IL+ + +       ++ + I  ++ IN   G +
Sbjct: 150 ERVKRASRTDTVTGISNMEGFCDKSVRILEKNRS----CYALIKLSIKDFRYINQRYGYS 205

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +GD VL S+ + + +  K  +   R+  + F ++   ++            +  +   + 
Sbjct: 206 MGDTVLQSIGKNLQKSCKDDEACGRIEKDMFALLYKYKSKKNMSLRMEDIRKNLLDKKLL 265

Query: 647 LL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYH-AKHRGGNHVESFRVSSFR--S 702
                E+  TA I     +        ML  A +A    A H+ G+H   +  +  +   
Sbjct: 266 CEMGMELDFTAGIYVIPKSEKGH-IKNMLDKALMAQQQVAHHQSGSHYLYYDENMMKKLI 324

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I      A++N E  L   P   +   ++V  EAL +W+  K   +    F+ + E
Sbjct: 325 FNNQIINYAPTAMKNEEFQLYIQPQFDIKTGKVVAGEALCRWEKEKGKFVPPDMFIPLFE 384

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I   + +ML ++ + +  W    +     I IN +   +   +  +    ++ +  
Sbjct: 385 DYGIILEFDFYMLNKLCQKMQKWMISGHPIK-PISINQSRLHIGKKDYIKEFCKVVDQYG 443

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                I    +ES  +   +    L  +L K G  L +DDFGT  + ++ L  I  D +K
Sbjct: 444 IPHPYIAFELTESAFVERYDSMIELATKLHKKGFQLAIDDFGTGFASMNLLSVISADILK 503

Query: 883 FNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL+     KR   +L+ +I +A  +E T+I + +      ++L  M CD  Q   V 
Sbjct: 504 VDKSLLDSIHTKRGKTVLQKVIELAHQMEMTVICEGVERMEQWEQLKYMNCDLGQGYLVG 563

Query: 942 SPLGFNSILK-LLKE 955
            P+  +   K  ++ 
Sbjct: 564 KPIPADEFEKIWIQR 578


>gi|167760318|ref|ZP_02432445.1| hypothetical protein CLOSCI_02691 [Clostridium scindens ATCC 35704]
 gi|167662201|gb|EDS06331.1| hypothetical protein CLOSCI_02691 [Clostridium scindens ATCC 35704]
          Length = 584

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 102/512 (19%), Positives = 195/512 (38%), Gaps = 20/512 (3%)

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF--RV----RAADNQFHWMIIRIRPM 502
           ++ W   I +++R      +      ++     E   R+    +  D  +  + I     
Sbjct: 71  LQEWHYGIEVSERVGVTLAILKVRTPKKELYMTEIDTRISIVWKRQDGDWKAVHIHQST- 129

Query: 503 SNSNGDILRYIGIANDI--TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
              +  +        ++      K  + I   A  D++T I N + F+++   I      
Sbjct: 130 --PDDRLAGLAAFNAEVARNTYNKINDVIKKEARTDSMTRINNMEGFVEQAQYIF---KC 184

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             + +  V+   I  ++ IN   G + GD +L ++ R + E     ++  R+  + F I+
Sbjct: 185 YPDQKFAVIKFGIRDFRFINRTYGFSTGDRLLKTIARNLEEACGRREVCGRIEKDIFSIL 244

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAEL 679
           L+ E  +          R+       + E E+ V  + G    T     T   ML  A +
Sbjct: 245 LVYEGENSMRRRMEEIRRELTKDGW-IKEIELEVWLNAGIYIPTDTRSETVKGMLDKALM 303

Query: 680 AMYHAKH---RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           AM   +           S  +     +   I E    A+E  E  L   P   +  E IV
Sbjct: 304 AMQSIQKYVKEDRYAYYSEWMLQQHYNNSQILEWASSAIEKKEFKLYIQPQFDMKTENIV 363

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL +W+      I  +EF+ + E+  +I   +L+MLE + R +  W  +       +
Sbjct: 364 GGEALCRWELSNGLVIMPNEFVSLFEDYNLIYRFDLYMLELVCRYMNKWMKEGKQLK-PV 422

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N +  D+  +   E   +++ +       +    +ES  +    R   L   L + G 
Sbjct: 423 SVNQSRADIEQDSFFEDFCSIVDRYEIPHEYLTFELTESAFIEEGNRIMKLARELHRKGF 482

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAK 916
            L +DDFGT  + L+ L  +  D +K + SL+     +   I   +I MA N++  ++ +
Sbjct: 483 KLAIDDFGTGYASLNMLSVVSGDILKIDKSLLESDNRRTRVIFEKVIEMAHNMDMKVVCE 542

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            +  +   K L R+ CD  Q       +    
Sbjct: 543 GVETQEQRKFLCRLNCDIGQGFLAGKAMKVED 574


>gi|120600751|ref|YP_965325.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|120560844|gb|ABM26771.1| diguanylate cyclase/phosphodiesterase [Shewanella sp. W3-18-1]
 gi|319428428|gb|ADV56502.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens 200]
          Length = 754

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/757 (16%), Positives = 268/757 (35%), Gaps = 40/757 (5%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           +        +L+    +   ++ + S+    L+           I    S +++  S + 
Sbjct: 23  LLKTSLLRIILLSGAILTTSIVLHSSLMAYQLNLSFV-------IIITVSFLSVLISALW 75

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           F   YL  +     +  +  +   CI +              +  + L ++ L+     I
Sbjct: 76  FTRRYLMLS--SISLLAMVVAACICILLFVPDFNLSQAGIIFLYTLPLMALFLFGAKAAI 133

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
                     +LL+    L  I  I + M  T    N ++       + L  + +  T  
Sbjct: 134 IMMFFNVLPFLLLLQNRNLPTIIDIDISMPATHAYLNGLLFTFFNICIPLSAMRLLKTQK 193

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            H        + +    E+ +     +G   +  +     +        I          
Sbjct: 194 IHSQQMIKHHEALQHTLEQYTEIFENNGTASFFCNEDGLILNLNDAAKNIAN-DVRVNQT 252

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            + +          + F     + +    +   L  +  ++  D                
Sbjct: 253 RLSDIFELAEDTPINLFAASFPTHLKNNPKAKYLLQKASLQHHDTLLFHCH--------- 303

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             D+      A +++  KK         F D +T +PN            + + +  + +
Sbjct: 304 --DVTEQTNHAIELSRLKKHHISTH---FYDLVTSLPNE-------NHWYNPAPSVIHQK 351

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            TV ++ ID   +IN   GI +GD +L +    +         + R  G  F +   S  
Sbjct: 352 MTVAIVKIDNLSQINAAFGIQIGDALLKTFANELKHRFGQHAKIYRFRGASFALEFTSLP 411

Query: 626 NSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                 + A  +R+ I   + L  E+++           + +K +  +  +   +A+   
Sbjct: 412 LISP-ENLAQQLRERIPTNLQLKQEQQVEYHLECRVGCSSGTKASPQQAAEQCLIAIKQT 470

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  V    + +   +    K  +  A++ + L +   P + + +  I+  EAL + 
Sbjct: 471 TQASPVMVYYIGLINNLLEASSQKARIRDALKYNRLEMWLQPQV-MANGHIISFEALARM 529

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I  + F+ I E   +     + +  ++ + I SW    N+PP+ I  N++ +D
Sbjct: 530 FDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPK--NVPPVKIAFNLSGQD 587

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +L +   + +             +++  +E+ V    + +   L  L ++G+S+ +DDFG
Sbjct: 588 ILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTYKETGRRLNTLARMGVSIAIDDFG 647

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+ I  E 
Sbjct: 648 TGHASLSQLIDISADTIKIDRYFISQLGISERHTQIVNAAILLAKSLKLNVIAEGIETEA 707

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            + +LT +GC   Q      P   N  LK  + + P+
Sbjct: 708 QLSQLTALGCKQFQGYLFGKPAPANLWLKTFQMQTPM 744


>gi|225568299|ref|ZP_03777324.1| hypothetical protein CLOHYLEM_04373 [Clostridium hylemonae DSM
           15053]
 gi|225163018|gb|EEG75637.1| hypothetical protein CLOHYLEM_04373 [Clostridium hylemonae DSM
           15053]
          Length = 990

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/567 (19%), Positives = 222/567 (39%), Gaps = 30/567 (5%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +++ +A+   +    +    Q + ++     V ++    ++V  T  +  +  +  
Sbjct: 418 EIVALENAIASLNANVRQNASKVSQIIELVNLPLGVVEYQRDAEKVFCTKKVIKMFMMDK 477

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                  R +L   +  D       LD  +     +   ++++     Q  W+ ++   +
Sbjct: 478 KYY---SRGYLDRKYFEDY-LSEAGLDVLLERSGEK---DYQIAH-TIQQRWVHLKS--L 527

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           ++ +  ++       DIT+     + I      D LT + NR++F  R+  +L   +   
Sbjct: 528 ADEDKTLI----TVLDITKDIYERQKIEYERDYDILTHLLNRRAFNRRMKQVLQEGSRL- 582

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +++ D+D  K +ND  G   GD  +       G L +   I+ R+SG+ F   + 
Sbjct: 583 -TLGAMIMWDLDNLKYVNDTYGHDYGDQYIQRAAIVFGGLARDGGIVGRISGDEFLAFVP 641

Query: 623 SENNSLKIADFAIAMRKSIA--MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              +  ++ +    +++ +     +      I V AS G A +     +  E+ K A+ A
Sbjct: 642 ECGSRERLLEKVEEIKRQLNNTRVVMPDGESIAVRASGGIAWYPDDGRSLDELRKYADFA 701

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY  K+      + F   ++  D  +++  E L   +E+  +   + PI+  +D  I   
Sbjct: 702 MYDTKNSYKGEFKEFDKKAYEKDAFLLQGREQLNKLIEDEMVNYAFQPIVSTIDGSIFAY 761

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++         S ++ M +A     +  I      R   D  S RD      +F  I
Sbjct: 762 EALMRPMMEN--LSSPADVMRLAIAQSRLPDIEKLTFRRALEDYASQRDAFGDRKLF--I 817

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N     +L  EL      L  +       + +   ES    +       +  L++    L
Sbjct: 818 NSIPNQILSEELM---YGLFERYQIGAGMLVVEMIESEQ-TDIGIMEDKIQMLKEFQAEL 873

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFG   S  S L Y+  D VK + S++      + R A+  S +  A+     +IA+
Sbjct: 874 AVDDFGAGYSSESTLLYMQPDYVKIDMSIVRDIHKDKDRQALAVSTLNYARPRGIKVIAE 933

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASP 943
            +    +++ L  +G DY+Q  +VA P
Sbjct: 934 GVETAAEMETLISLGIDYLQGFYVARP 960


>gi|239626865|ref|ZP_04669896.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517011|gb|EEQ56877.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 618

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 186/428 (43%), Gaps = 11/428 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNRQ  L+ L  +L            +MV+ I  ++++N+V G   GD+ L  +
Sbjct: 187 DYLTNVPNRQELLNMLDLML---KRHPEKDFVLMVVSIRDFRQVNNVCGQHGGDEFLKEV 243

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENN--SLKIADFAIAMRKSIAMPINLLEREIT 653
              +   +     + R SG+ F ++   E +     +      ++  +A P    + +  
Sbjct: 244 CGFLCG-IGPQGNVYRFSGDEFALLFTDEEDRLERHVRKCVGDIQTRMAQPWQNRDYQFI 302

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDL 711
           + A IG    +    T    +   E A+Y AK    G        +      R  I + L
Sbjct: 303 LPAVIGIIRRSEYVNTLESAVSAIEYAVYQAKTGRYGQVLYCDQEMLGKLERRKQIIQVL 362

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              +   ++ L Y PI  +   +    E+L++ +H   G +  SEF+ IAEE  +I  + 
Sbjct: 363 KDQLSEKKVELYYQPIYSVDTGDFRFAESLMRMNHTPIGPVYPSEFIPIAEETGLIIDLT 422

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +L+ + R I     +       I +N ++      +L   +  +I +       +K+ 
Sbjct: 423 YVILDTVCRYINHLLGKGIPIEA-IHVNFSAIQFSQPDLARKVLDIIKRNGTPMGAVKIE 481

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           F+ES +  NP+        ++K GI + LDDFGT  S ++ +  IPF TVK + S +  S
Sbjct: 482 FTESTLAENPQVVTDFAIEMKKHGIRMGLDDFGTGYSNIATVIQIPFGTVKLDKSFVQAS 541

Query: 892 TEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            + R +   +R ++    ++  +++A+ +  E   + +  +G + IQ  + + PL  + +
Sbjct: 542 MDNRKSELTIRHLVHAFNDLGMSVVAEGVETEEQKQMVIDLGVEQIQGYYYSKPLPGDGM 601

Query: 950 LKLLKERF 957
              L+ R 
Sbjct: 602 EGFLEARM 609


>gi|222082594|ref|YP_002541959.1| hypothetical protein Arad_9287 [Agrobacterium radiobacter K84]
 gi|221727273|gb|ACM30362.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 632

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/446 (25%), Positives = 190/446 (42%), Gaps = 21/446 (4%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             + TE+    E +L  +  D LTG+ NR++   RL         +      ++ +D+D 
Sbjct: 181 HREATER---GEALLRMSNTDYLTGLENRRAVDHRLRNYWKEWQANSRGFTAIL-VDVDF 236

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFA 634
           +KK ND  G   GD  L+ +   I E +      + R  G  F I+L   +   ++A  A
Sbjct: 237 FKKYNDFYGHQEGDRCLIHIAASIKEAVAPLGGSIGRYGGEEF-IVLAQFSEKERVAYLA 295

Query: 635 IAMRKSIAMPINLLEREIT----VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGG 689
             +R ++     L E        VT S+G A     S     +++  A+ A+Y AK  G 
Sbjct: 296 ERIRSTVEQLRLLHEERRDGTSVVTVSVGAAFTREQSGAKLEKIIHEADRALYGAKASGR 355

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N    F  +      +   I   L +A+  + + LVY PI  +       +EAL++    
Sbjct: 356 NCTRLFDPNDPYSSDESENIAALLKIAINQNLVSLVYQPIEDVASGRQDVVEALMRLRTL 415

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LINIASKDLL 806
               I  + F+ IAE   MI  +  +++    RD+           + I  IN++   L 
Sbjct: 416 DGSVIPPNLFIPIAERTGMIIELGRWVIRTACRDL------LADNHVQIASINVSPIQLK 469

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  + A++ +T  S SR+    +E + M         +  L+ +GI + LDDFGT 
Sbjct: 470 MPGFAASVAAILYETGVSGSRLAFEITEGLEMEMHSDILRCINDLKTLGIRIWLDDFGTG 529

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + LS+L  I FDTVK + S + GS   R  A+L+ II + +N    I+ + +  E  + 
Sbjct: 530 FAGLSWLRLIDFDTVKIDRSFLHGSATARGKAMLQDIIGLIRNRGPKILVEGVETEKQLA 589

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L  +  DY Q  HV  P    +   
Sbjct: 590 LLRELRIDYAQGYHVGRPALAQTFRN 615


>gi|56695447|ref|YP_165795.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3]
 gi|56677184|gb|AAV93850.1| diguanylate cyclase, putative [Ruegeria pomeroyi DSS-3]
          Length = 513

 Score =  322 bits (826), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 203/437 (46%), Gaps = 10/437 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D++TG+  +  F   LT I  ++A  D       +I++D Y  + D  G   GD V + 
Sbjct: 71  RDSVTGLMLKDGFEGALTHIHAMAAETDRKS-ACFIIELDDYADLVDHHGQEAGDLVALR 129

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
              RI   ++  D++ARL   RF + L      +       A  M+ ++  PI+L    I
Sbjct: 130 SGERILSAVRNNDVVARLGDRRFAVCLAPVPQLDLELCIQLAGRMQSAVEDPISLDGVAI 189

Query: 653 TVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            V+ SIGF     +   ++S+ L  A +A+  A+  G + + ++     R       +++
Sbjct: 190 YVSCSIGFCQNRRAPGSSASDWLDAANVALAAAQGAGPSAIRAYAPDMERRPSGAPDLRD 249

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+EN ++   Y P I     ++ G EAL +W+HP  G ++ + F+ + EE  +++ 
Sbjct: 250 EIQAALENGQIQPWYQPQISTDTGKVTGFEALARWNHPTRGLLAPNLFLPVIEEAGLMER 309

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ML      + +W       P  + +N AS +L +  L E +Q  + +   +P R+ 
Sbjct: 310 LGQVMLYHALTAVKAWDSAGVDVP-RVGVNFASDELRNPGLVERVQWELDRFDLTPDRLS 368

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+V    P+      +  L K+G  + LDDFGT  + ++ +       +K + S +
Sbjct: 369 VEILETVFSNTPDDVITRNIAGLGKLGCRIDLDDFGTGHASIASIRRFDISRIKIDRSFV 428

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ +E   +A+ +    +   L ++GCD++Q   +  P+ F
Sbjct: 429 MKADRDPEQQRMIAAILTMAERLELETLAEGVETVGEHALLAQLGCDHVQGFGIGKPMPF 488

Query: 947 NSILKLLKERFPLVKNT 963
           +  L  +      +++ 
Sbjct: 489 DQTLDWIAHHDAKLQDA 505


>gi|300718964|ref|YP_003743767.1| phosphodiesterase [Erwinia billingiae Eb661]
 gi|299064800|emb|CAX61920.1| putative phosphodiesterase [Erwinia billingiae Eb661]
          Length = 656

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 200/442 (45%), Gaps = 20/442 (4%)

Query: 528 GILCNAFQD---------NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             +  A  D          LT +PN+  FL  L   L+  + DDN   T+MV+ I+  + 
Sbjct: 216 QQVGEAVHDEMSRLTTRFALTNLPNKTLFLALLEQHLNSVSDDDN--FTLMVLRIETLQD 273

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            N V+     D +L++L  +I   +    ++ +LSG+ F +++   N   +    A  + 
Sbjct: 274 ANGVVKDEQRDALLLTLLEKIRNSIDSHTLVGQLSGSDFVLLVKRANKPFRAMRLARLLL 333

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +  P+ L + ++    SIG A   +  +T+ + L  A  AM  A+H+G N +  +   
Sbjct: 334 LRLNQPVTLQDMQLRPNLSIGLAQREARDLTAQDFLSRAASAMMSARHQGKNQILFYDPM 393

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   +  + D+   +E  +  L   P I + + ++VG EAL++   P        +
Sbjct: 394 MMERAHKRLTQEHDILQGLEEEQFSLFLQPQIDMRNGKLVGAEALLRMRQPDGSWALPED 453

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            ++ AEE+ +I A+  ++ E   R +  W+ Q     + + +N+++  L + ++   +Q 
Sbjct: 454 LIVNAEEIGVISALGRWVFEESCRVLAGWQKQGIN--LPLSVNLSAVQLREADMVTHLQD 511

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           LI +   SP  + L  +E+  +G PE++  LL  L+K+GIS+ LDDFG   + L++L   
Sbjct: 512 LIHRHQISPGSLMLEITETAQVGEPEQALQLLSELQKVGISVALDDFGMGYANLNWLSQF 571

Query: 877 ---PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              P   +K + S +         ++R +  +A+ I+  +IA+ +        L   G +
Sbjct: 572 KSLPISKLKMDRSFVCVL-PNDDTMVRIVAAIAEIIKLDVIAEGVETSQQRDWLLARGIN 630

Query: 934 YIQDSHVASPLGFNSI-LKLLK 954
             Q    +  L       K L+
Sbjct: 631 IGQGYLYSEALPLAVFNRKYLE 652


>gi|330952919|gb|EGH53179.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 743

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/399 (26%), Positives = 178/399 (44%), Gaps = 10/399 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +    D    +     S   +   D     V        + G     +   +   L  +
Sbjct: 348 QRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFTRVSGYEVAQVLDQLPGMLT-V 406

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                   R IL       +G  + E R++  + + +   + I  + +  GD+  Y+   
Sbjct: 407 EAEQETRLRHILRQL--NGQGTWEGEIRLKRRNGEHYPAWVGITAVLDDEGDLASYVCFF 464

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DI+E+K S + I   A+ D LT +PNR  F DRL + L  +         +M +D+D++
Sbjct: 465 SDISERKASEDRIHRLAYYDALTHLPNRTLFQDRLHSALQHAERQQ-AWVVLMFLDLDRF 523

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----AD 632
           K IND LG A GD +L  +  R+   +   D +AR+ G+ F ++L  +            
Sbjct: 524 KPINDSLGHAAGDRMLQEMATRLLACVSVDDTVARMGGDEFTLLLEPDETREAALSRAIH 583

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  S+  P  L  RE  VTASIG A         S+++KNA+ AMYHAK RG N+ 
Sbjct: 584 VAERILTSLITPFVLEGREFFVTASIGIALSPQDGKELSQLMKNADTAMYHAKERGKNNF 643

Query: 693 ESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + ++     +  +R+ ++ DL  A+E  E  L Y P      + + G EAL++W HP+ G
Sbjct: 644 QFYQADMNATALERLELESDLRHALEQKEFTLFYQPQFSGDGKRLTGAEALLRWRHPRRG 703

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
            +  ++F+ + EEL ++  +  ++L    R +  W    
Sbjct: 704 LVPPNDFIPVLEELGLVVEVGDWVLAEACRQLKHWHQAR 742



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +      SQ +    +R  +      D+++  D        +P +   LG ++ 
Sbjct: 199 IGIAKDITEQVASSQSLRDSEQRYRMLAESISDVIFSTDGRLAVNYVSPSVERALGYSAE 258

Query: 444 S-----MHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRV-----RAADNQF 492
                     I N    +  +        +LD      R R +   R+       AD + 
Sbjct: 259 WILQNGWSAAIANPQQTVGFDALMGRIDKVLDKPQELARLREEVTTRMFLFDCLRADGRK 318

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             + +R+  +   NG+     G+  DI++Q+++ + +   A 
Sbjct: 319 IPVELRVVLVWGENGNFEGIFGVGRDISQQRRAEKDLRMAAT 360



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 11/161 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD-IATILGLAS 442
              I  + +       +       S  V    D ++  D++  RV  +       LG + 
Sbjct: 66  ILSIGDITSRKQVELSLLDRESFWSDVVRTVPDHLYVQDVLSQRVIYSNHHFGYTLGYSK 125

Query: 443 GSMHGPIRNWLP-YIHINDRDNFRTI-LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
             +H     +    +H +D  N++ + L          LQ   R R  ++ +    IR +
Sbjct: 126 SELHAIGEFFWEVLLHPDDARNYQDMRLRQRHHGHNELLQRVLRFRDRESNWRSFDIREQ 185

Query: 501 PM-SNSNGDILRYIGIANDITEQ-------KKSLEGILCNA 533
            +  +    + R IGIA DITEQ       + S +     A
Sbjct: 186 ALAWDEEDRVTRIIGIAKDITEQVASSQSLRDSEQRYRMLA 226


>gi|330876548|gb|EGH10697.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 398

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 153/370 (41%), Gaps = 10/370 (2%)

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD++L  L R + + L+  D LARL G+ FG++L+       +            +
Sbjct: 2   GHAAGDELLRQLCRALPQGLRDGDTLARLGGDEFGVLLVDCPADTALDIAEGLREIVQTL 61

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---- 699
                 R    T SIG      +  T    L  A++A Y AK RG N V+ + V      
Sbjct: 62  HFMWKGRPFMTTVSIGLVQLGDTPATLEGSLSAADMACYMAKERGRNRVQVYSVDDLTLS 121

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEF 757
            R   +   + L +A++ +   L    I  +    +E+  +E L++        +    F
Sbjct: 122 MRFGEMAWIQRLHMAMDENRFCLYAQEIASIKGEGDEVRHIEILLRLRDESGRMVVPDNF 181

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWR--DQANMPPIFILINIASKDLLDNELCEGMQ 815
           +  AE   ++  ++ +++  + + I   +  D+   P     IN++   + D+   E ++
Sbjct: 182 IPAAERYGLMTTLDRWVVHNVFKVIAQCQSDDRHQAPQALCAINLSGSSIGDDTFLEYLK 241

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
                   SP  I    +E+  + + + +   +  L+ +G   +LDDF +  S  +YL +
Sbjct: 242 QQFKAFAVSPGMICFEITETSAIADLDSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKH 301

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K +GS +          A++  I  +   +    IA+ +        L  MG D
Sbjct: 302 LPVDFLKIDGSFVKDMLDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEFALQEMGVD 361

Query: 934 YIQDSHVASP 943
           + Q   ++ P
Sbjct: 362 FAQGYLISRP 371


>gi|325261743|ref|ZP_08128481.1| putative sensory box protein [Clostridium sp. D5]
 gi|324033197|gb|EGB94474.1| putative sensory box protein [Clostridium sp. D5]
          Length = 755

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 175/440 (39%), Gaps = 14/440 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
             S + +   AF D +TG  N+ +F  +    L+L+   +     ++ +++ K+K IN+ 
Sbjct: 322 HDSRKKLERFAFIDEVTGGMNQAAFHMK---YLELAPDMEPSAYCIVQLNVKKFKLINER 378

Query: 583 LGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            GI   + +L  + + +   +     +  AR   ++F + L  E +   I      +   
Sbjct: 379 YGIQEANGILRYIYQVLERNIDRKKNEFAARSQSDQFFLCLR-EASREGIQARLDKIFAD 437

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
           I    +       ++   G           + +   A LA Y     G  ++  F   + 
Sbjct: 438 IKAFEDTDVPHCELSFQQGACMIDDPSRDITILQDRARLA-YQYGEMGTENLCMFYNDNI 496

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    + +    ++ N +  +   P + L    I G EAL++W+HP+ G I  S+F
Sbjct: 497 VEQMKKEQELNDLFEKSMANRDFQVYLQPKVGLESGRIEGAEALVRWNHPEKGFIFPSDF 556

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+   I  ++LFM E +   +  W  +    P+ + +N++ +    +   E     
Sbjct: 557 IPLFEKNGKICQLDLFMFEEVCALLKRWSAEGKN-PVPVSVNLSRQHFQSSRCLEPFIET 615

Query: 818 ISKTLYSPSRIKLSFSESVVMG--NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             K   +   I+   +ES+        R + ++ ++ +     +LDDFG+  S L  L  
Sbjct: 616 ADKYGVAHEMIEFELTESIFFDYGQINRVKDVIRQMHEQRFRCSLDDFGSGFSSLGLLKE 675

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
              D +K +        +EK   ++  +I +AK +    +A+ I     ++ L  + CD 
Sbjct: 676 FDVDVLKLDRLFFLDMYSEKAKDVIACLIDLAKRLHVKTVAEGIEDSRQLEYLRSLHCDM 735

Query: 935 IQDSHVASPLGFNSILKLLK 954
           +Q    + PL        + 
Sbjct: 736 VQGYVFSRPLPVQEYEGWIS 755


>gi|260768963|ref|ZP_05877897.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260616993|gb|EEX42178.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 637

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 202/451 (44%), Gaps = 27/451 (5%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A+ D LT + NR   L ++  +        N    ++++DI  +K+IND++   
Sbjct: 191 KYQQFMAWHDPLTKLKNRNYLLKQIEVLSKR-----NHHYALILVDISHFKEINDIVSYE 245

Query: 587 VGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            GD +L+ ++ RI +       + AR+  + F I++    +      F  ++   +   +
Sbjct: 246 YGDKILMEISERIQDKCDKFSFLCARVGADEFAILIN--RSEFNFEFFVKSLLSDLTTVL 303

Query: 646 NLLEREITVTASIGFASWTSSKITSSE-------MLKNAELAMYHAKHRGGNHVESFRVS 698
           + L+    +T S G A        +         +L NA+LA++ AK      V  +   
Sbjct: 304 HRLDPSKRMTLSTGIALSHEMSEHTKRYLKKSSVILNNADLALHIAKRHPTESVVYYSKE 363

Query: 699 SFRSDR--VMIKEDLC---LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                R    + E+L          +LY+ + PII    E + G EALI+W+HP  G I+
Sbjct: 364 MEIEHRKKRKLSEELEVLLKTSHQKQLYMAFQPIILRQSERL-GCEALIRWNHPTHGFIN 422

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDII-SWRDQANMPPIFILINIASKDLLDNELCE 812
               + IAEE  + KA+  ++++++ + +   W    +   I + IN++   L D EL  
Sbjct: 423 PEYLIAIAEESGLAKALGRWIMQQVYQALSVDWLAFNSR--IEVAINLS-DSLFDEELPA 479

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  + +  +     I L  +E++ +   +RS  ++ +L  I I L+LDDFGT  S L  
Sbjct: 480 LVSDIFASNINYLDAIVLEITETMTLDEIDRSVSIIRQLEDINIRLSLDDFGTGWSSLYN 539

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++ F+ +K + S +      E++   + +I+ ++  +   ++A+ +  E  +  L  +
Sbjct: 540 LNHLRFNKLKIDKSFVRDLNSLERQKFFISAIVTLSHQLGIKVVAEGVEDETQLHRLQEL 599

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           G D  Q  + + P+      +   + F   +
Sbjct: 600 GVDEFQGYYFSKPVTKEEFARFSDQYFARAQ 630


>gi|223984853|ref|ZP_03634961.1| hypothetical protein HOLDEFILI_02260 [Holdemania filiformis DSM
           12042]
 gi|223963192|gb|EEF67596.1| hypothetical protein HOLDEFILI_02260 [Holdemania filiformis DSM
           12042]
          Length = 949

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 167/435 (38%), Gaps = 21/435 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +      +   ++ D+LTG+ NR  ++  L   +            V+ +D++  K+IN
Sbjct: 515 HRAMDKAKLAQLSYTDSLTGLFNRNRYIQDLDKKITDPQ-----PVGVLFVDLNGLKEIN 569

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD+ L + +  +       D   R+ G+ F ++                  + 
Sbjct: 570 DQFGHDRGDEALRTCSDHLRACFAP-DSCYRIGGDEFVVLTHDITEEEFFGQVQYLRLRL 628

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRV 697
            +           +  +IG              +K A+  MY  K     H      +R 
Sbjct: 629 QS--------NAKLHLAIGTHWAP-DGSQLPSAIKAADEKMYKDKKAYYYHASQTGRYRH 679

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +     +     L   +  S   + + P I +    +VG EAL+++   +   ++ + F
Sbjct: 680 HTDEVLPLANLNVLRQKLNESRFLVYFQPKIAIDTGLLVGAEALVRYQLDENLILAPNAF 739

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + EE   I  I+ F+ E +   +  W  +       + +N +   +L+   C+ +  L
Sbjct: 740 IPLLEETQTISQIDFFVFEFVCLRLQKWIREGRPIS-PVSVNFSRYTVLEETFCQRLAEL 798

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                 S   +++  +E+ +    E  R  +  +R+ G S+++DDFG + S LS      
Sbjct: 799 SDHYQISRDLLEIEITENALDVREEDLRQTIDAVRRSGFSVSIDDFGVEFSNLSLFSGAD 858

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K + SL+      EK  A+++++  +   ++  ++A+ +  E  +  L +      
Sbjct: 859 FDILKLDRSLIQDIAVNEKARALIQAMSDVCLKMKIKLVAEGVETEEQLGILNQCHVGIA 918

Query: 936 QDSHVASPLGFNSIL 950
           Q    + P+      
Sbjct: 919 QGFLFSKPIPVADYE 933


>gi|307720267|ref|YP_003891407.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978360|gb|ADN08395.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 653

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 172/416 (41%), Gaps = 27/416 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DNLT +PNR   +D +  + + S+        + +I+ID +K IND  G   GD +L  
Sbjct: 253 TDNLTKLPNRLKLIDYIKNLYNASSVH------LALINIDGFKDINDFYGHKTGDKLLKQ 306

Query: 595 LTRRIGELLKFPDI-LARLSGNRFGII-LISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           +   I  L K     + +L  + + I  +     S  I +    + K       +    +
Sbjct: 307 IASTIVNLCKDKSTSVYKLPSDEYAIFSVADVKASEFINNIRTLINKIQETNYLIDGNSL 366

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRSDRVMIKE 709
            +T S G A           ++  A++A+  AK    + +        +   +  +    
Sbjct: 367 YITVSCGVA-SNEHG-----LITKADMALQVAKENKKSLISYSSSIDTAEQVNKNIQCVT 420

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+ N ++   + PI  +  ++I   EAL++        I  + F+ I+ +  +   
Sbjct: 421 LLKNAIHNDQIQPYFQPIYNVKTKKIEKYEALVRIKTQDGRVIVPNSFLDISIKSKLYPN 480

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   M+E+                    IN++  D+L+    + +   +     +PS++ 
Sbjct: 481 ITKVMIEKSFAFFQ-------NTDYEFSINLSINDILNKRTMDFIMKSLHHYN-NPSKVV 532

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
               ES  +GN +  +L +  ++++G  + LDDFG+  S  S++  +  D +K + SL+ 
Sbjct: 533 FEILESDKIGNYDDIKLFIHNVKELGCKIALDDFGSGYSNFSHVLELNVDYLKIDASLVK 592

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                E    I ++II  A NI    IA+ +  E  +  L  MG D+IQ   +  P
Sbjct: 593 NITTDENSRKITQTIITFASNIGLKTIAEYVENEEALNILDEMGIDFIQGYFIGKP 648


>gi|113953616|ref|YP_730717.1| GGDEF/EAL domain-containing protein [Synechococcus sp. CC9311]
 gi|113880967|gb|ABI45925.1| GGDEF/EAL domain protein [Synechococcus sp. CC9311]
          Length = 573

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/570 (20%), Positives = 217/570 (38%), Gaps = 57/570 (10%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWL------PYIHIN 459
             L +    D +   +    +V         +  +          + L           +
Sbjct: 38  LELVMDELLDGILIVNNDNRKVIYFNDKFKQLWRIPQSISENSDDHALLCYVATQLEAPD 97

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +   F   ++  +       Q E  +   D +      R     +        + I  D+
Sbjct: 98  E---FLKKIN-LIHSTDQSWQDE--INFKDGRVF---ARKSICVSGMDKFKSRVWIFRDV 148

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T +K            D+LTG  NR+++        D    + +++  V V+D++ +K I
Sbjct: 149 TSEKSI--------HIDSLTGCLNRKAWDS--IGTKDWVLGNYSMQYCVAVVDLNDFKNI 198

Query: 580 NDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND  G   GD VL  L   +  L+    D + R  G+ F I+L          D + ++ 
Sbjct: 199 NDDFGHEAGDRVLKRLGVTLKRLIRNKQDKVFRTGGDEFCILL------ESSTDISSSIS 252

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +   +        + A+ G       K    E  + A+  M  AK    +   S    
Sbjct: 253 NRLTNELIAAG----INAATGVCMS-KQKEGIIEAFRKADARMLAAKKAQKHLQNSLIHP 307

Query: 699 SFRSDRVM--------IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           S +             +  +L +AV+  EL L + PI      +I  +E L +W H +  
Sbjct: 308 SHQVATRKTKTDEEIDMLANLSVAVKKKELDLAFQPIFD-RYGQIAWVEVLCRWTH-EGQ 365

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL---D 807
           NI    F+ ++E    I  I  ++LE   + +  W++++ +  I + IN ++  +    +
Sbjct: 366 NIPPDIFIPLSESSGQIHRIWDWVLEESVKTVHMWKEKSKL--ISLSINFSAVQVEYYKN 423

Query: 808 NELC--EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                   ++++  +   SP  +K+  +E+ ++ +  +++ L   L  IG+ L +DDFGT
Sbjct: 424 TGFSYSNQIKSICEEYKVSPKCLKIELTETSLLTDLMKAKELFEELTDIGVDLCIDDFGT 483

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S LS +  +P   +K +GS + G        AI +  I MA  +   + A+ +     
Sbjct: 484 GFSSLSIMQALPIKYIKIDGSFINGVPLNLSNTAITKGTISMANELGLEVCAECVESSEQ 543

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I+ L   GC Y Q    + PL    + KL+
Sbjct: 544 IEFLRSYGCHYFQGYFKSKPLPAVEMAKLI 573


>gi|254448758|ref|ZP_05062215.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           HTCC5015]
 gi|198261599|gb|EDY85887.1| sensory box/ggdef domain/eal domain protein [gamma proteobacterium
           HTCC5015]
          Length = 728

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 102/501 (20%), Positives = 204/501 (40%), Gaps = 24/501 (4%)

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
                 L+          + + RVR   +        +  +S++    +  I        
Sbjct: 245 KRILRPLEELQTPLARLAEGDMRVRVKRSGVR----EVSAISDALNSTIHAIA------- 293

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +  + +   A  D+LT + NR  F D++ + L            +  ID+D++K IND
Sbjct: 294 --ERDQALRDLANHDSLTHLVNRHFFTDQVISELLTVEDTQQTS-ALFFIDLDEFKAIND 350

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +LV +   +   ++  D+++R  G+ F +++               ++   
Sbjct: 351 RLGHDAGDRLLVQVAEILKSRVREYDVVSRFGGDEFVVLVSGVGELEAQQVAEGILQLME 410

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
               +   +   +  SIG     SS+ T  E+LK A+ A   AK RG N +  +     +
Sbjct: 411 GYQYSEQGQVFNICCSIGITMIESSQFTVDELLKQADSACQMAKLRGRNGLVMYDAGQMQ 470

Query: 702 SDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +++      + L  A+++    L Y PI+ L  +++   E L++        I    F
Sbjct: 471 KQQLLEDSGWSKKLAAALKDDRFVLHYQPILDLKSQQVRYYEVLLRMQGEPGELIPPDAF 530

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  A+       +  +++E     +    ++       + IN+++K L D +  + + +L
Sbjct: 531 LGAADRFGFSVEVARWVIEHALSTVAHQPNKTAG----LSINLSAKALEDTQFIDWLGSL 586

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +T   PSR+     E  ++ + + + L L  L  +G  + +D F    S    L  IP
Sbjct: 587 IKETEIEPSRLAFEVEEQALLNSRQEALLGLKALSGLGCVIIMDGFCAGLSASGKLQNIP 646

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K    L+TG   ++    ++ +I  +A+ +    IA  +  E+ +  +  MG D  
Sbjct: 647 FDGLKIQRELVTGLLASDVNKTLVSAIAELARVMGKFTIAGFVQDELTLSLVKEMGVDCA 706

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q   +A+P  F  +  + K  
Sbjct: 707 QGYFLATPNCFEELDDVFKTH 727


>gi|254003161|ref|YP_003052627.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253987244|gb|ACT52100.1| diguanylate cyclase/phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 455

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 192/418 (45%), Gaps = 9/418 (2%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           SF+D L  I++ +  ++     V  +++D     N+  G       ++ +  R+   +  
Sbjct: 29  SFVDNLMRIIEATDRNE--ILLVCNVNLDDISSHNETHGYGFTTKAILQIEERLRSFVGH 86

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             ++++  G  + ++L   ++   I     A+R +++   ++ ++ + +T ++G + +  
Sbjct: 87  SGLISKARGGEYLLLLRPISSLDHIVPLLRALRDTVSTQNHVGDKRVCITGTVGCSIFPI 146

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLV 723
                  +++NA  AMY AK  G N  E F   +       +++   L  A+ N EL L 
Sbjct: 147 EGNRGQMLIRNAAQAMYSAKLSGKNRYEIFDSQTAHIAAKEVQKGTVLQQAILNRELELH 206

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P + L    I  LEAL++W+HP  G    S F+       +   + L+ +E + + + 
Sbjct: 207 YQPKVDLYTGNIHSLEALVRWNHPVHGMQQPSAFLPQEYREGVGYQLGLWAIEAVMQQLE 266

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGNPE 842
           +W     +  + I +NI++   L+      ++ L ++     P  I+    ES  + + E
Sbjct: 267 AWIQAGYV--LPISVNISAGQFLNQSFLADLRRLQTEYPSAKPELIEFEILESEAIEDLE 324

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900
           R   ++  L+  G   +LDDFGT  S L +L  IP   VK + + + G T+     A+L+
Sbjct: 325 RLGAIVVSLQAQGFKFSLDDFGTGYSSLLHLKAIPAQYVKVDKAFVAGITKNLRDHALLQ 384

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            +I +++     I+A+ +      + L  MGC YIQ   ++ PL  + ++  +K   P
Sbjct: 385 MMIELSQLFNYEIVAEGVETLQHGQMLREMGCRYIQGYFISKPLPADLVIAWVKNYIP 442


>gi|308189268|ref|YP_003933398.1| signal transduction protein [Pantoea vagans C9-1]
 gi|308055883|gb|ADO08052.1| Predicted signal transduction protein [Pantoea vagans C9-1]
          Length = 533

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 193/425 (45%), Gaps = 21/425 (4%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A  D LTG  NR++F  RL  +            T+ +ID++ +K IND+ G   GD V
Sbjct: 87  LAGTDELTGTGNRRAFSIRLAEL-----DAGGTPYTLTLIDVNDFKSINDLHGHRQGDAV 141

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L++L R +         + R+ G+ F I          I      +R++  +        
Sbjct: 142 LITLARLLTAFTGPETQVFRIGGDEFAITSGHSYTDEAIETAQNLLRRAAGIRT---GPG 198

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
           + ++ S+G A  +++     ++++ A+LAMY AK    + V  F +   +  R    ++ 
Sbjct: 199 MFLSLSVGVA--STACSAGYDIVQAADLAMYEAKRDTAHPVVRFTLGLEQRFRRRERLQN 256

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D+ +AV N ++     P++ L    I G E L +W +     ++   F+ + E L ++  
Sbjct: 257 DVAMAVRNHDILPFLQPLVCLKTGRIRGFEILARWINSSGRAVAPDVFLPVVERLGLMDT 316

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   +LE +      W        + + +NI  + LL   L   +  ++      P R++
Sbjct: 317 LTARLLEAVVPLTPGWPA-----GLHLALNITPEQLLKPALTACVSRIMQHAG--PVRLE 369

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E  VM   E +R  +  L++ GI + LDDFGT  S LS L  +  + +K + S ++
Sbjct: 370 LEITEQHVMMISEDARRAILTLKESGIGVVLDDFGTGYSNLSVLLGLGINHIKIDRSFIS 429

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              ++ ++  ++ +++ + K++  T+ A+ I     ++ L R GCDY Q    + P+   
Sbjct: 430 DFINSPRKERVVETLLLLCKDLGVTVTAEGIEDAATLEWLLRRGCDYGQGYLFSQPVPAE 489

Query: 948 SILKL 952
               L
Sbjct: 490 HAAGL 494


>gi|294638215|ref|ZP_06716469.1| protein YhjK [Edwardsiella tarda ATCC 23685]
 gi|291088651|gb|EFE21212.1| protein YhjK [Edwardsiella tarda ATCC 23685]
          Length = 658

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 187/448 (41%), Gaps = 24/448 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   +     T +PN   F+  L              P+V+++ I   ++   VL
Sbjct: 225 QARQTLSQLSTHGWQTDLPNSALFVSLLEQ--------RRGEPSVLMVSIPTLQEAMGVL 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             A  + ++ +L  R+   +    +LA+ S +RF I     +    I   A  +   +  
Sbjct: 277 NAAQREQLMATLVTRLRGEIAPDGLLAQASQDRFLIAEWGVSQPEVIRQQAHQLMTRLIQ 336

Query: 644 PINLLEREITVTASIGFAS-------WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           PI +    +    +IG A               +  +L  A  A++ A   G N +  F 
Sbjct: 337 PITVDNLTLRPVIAIGIALGSTPSVTSEGESSQADRLLAQAHSALHSALAEGKNSIRFFE 396

Query: 697 VSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   V +  +  +  A++     L   P I L + ++VG EALI+W H        
Sbjct: 397 PELAEQVTVRLTQEAAIHDALQRGNFALYLQPQIDLRNGQLVGAEALIRWRHQDGHYGEP 456

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S+F+ +AE    I A+  +ML+     ++ W+       I + +N+++  L+D    + +
Sbjct: 457 SQFIPLAEAFGGIVALGEWMLDEAIHILLEWQR--GGLMIPLSLNVSAVQLVDEHFSQRV 514

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L+ +   +P R+ L  +E+  + +  ++  LLGRLR  GI + LDDFG   + L+YL 
Sbjct: 515 VRLLQQHAIAPHRLHLEVTETAYIDDMHKAAELLGRLRAQGIRVALDDFGMGYAGLNYLR 574

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           ++P D +K + S +        A++  +  +A+ +   ++A+ +  +     L   G  Y
Sbjct: 575 HLPIDILKIDKSFIDPL-PSDGALVHIVGSIAEVLSLEVVAEGVENQQQCDWLLANGIHY 633

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
            Q  + +  L     +     R+P    
Sbjct: 634 AQGYYFSPALSLPEFVA----RYPSAPR 657


>gi|255099863|ref|ZP_05328840.1| putative signaling protein [Clostridium difficile QCD-63q42]
 gi|255305751|ref|ZP_05349923.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 1009

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 97/495 (19%), Positives = 206/495 (41%), Gaps = 35/495 (7%)

Query: 463 NFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            F   L     Y +   + E    ++  + D +  W+ + I    +     L+ +G+  D
Sbjct: 510 KFLKKLRGLDKYLQESYETENTYIYKFESKDKKLKWIRMNI--FEDE----LKVLGVVVD 563

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T++      I      D LT + NR++F  ++         D+      ++ D+D  K 
Sbjct: 564 VTKEFIEKRKIEYERDFDILTNLLNRRAFHSQIQE--KFKNKDELKIAAFIMWDLDNLKY 621

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD+ +      + + + +  I++RLSG+ F + +    +   I D   +++
Sbjct: 622 INDTYGHDAGDEYIRCAADILKKFISWNGIVSRLSGDEFYVFIYGYESKDSIRDIINSVK 681

Query: 639 KSIAMPIN--LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           K +   +       E  + AS G + +        E+++ A+ AMY  K+     V  F 
Sbjct: 682 KQMNNTLLKLHDGTEFKIRASAGISWYPDDSTNYDELMRYADFAMYQIKNTIKGEVSEFD 741

Query: 697 VSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           ++ +  D  ++    +L   ++   +   + PI+     ++   EAL++         S 
Sbjct: 742 INIYNKDSFLLSNREELNKLIDGQLVEYAFQPIVDCK-GKVFAYEALMRPKIKT--FSSP 798

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LI---NIASKDLLDNEL 810
            + + +A     +  I      +  +    ++++     +F+  I   N++  D      
Sbjct: 799 IDVIRLARSQSKLYQIERITWFKALKSFKKYKEKFGDCKLFLNSIPNNNLSKVDF----- 853

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E ++ L        +R+ L  +E+  + N +        +    I + LDDFGT  +  
Sbjct: 854 -EEIEDL---YGEYLNRVVLEITENDKI-NEDFIEKKKAYIDHWNIEIALDDFGTGYNGD 908

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L YI  D VK + S++ G    E R  IL+++I  +      +IA+ +  + +++ L 
Sbjct: 909 AVLLYIMPDYVKIDMSIVRGIDKDENRQKILKNLISYSNERNIKVIAEGVETKGEMETLI 968

Query: 929 RMGCDYIQDSHVASP 943
            +G DY+Q  +++ P
Sbjct: 969 NLGVDYMQGYYISKP 983


>gi|126698328|ref|YP_001087225.1| putative signaling protein [Clostridium difficile 630]
 gi|115249765|emb|CAJ67582.1| putative diguanylate kinase signaling protein [Clostridium
           difficile]
          Length = 1011

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 97/495 (19%), Positives = 206/495 (41%), Gaps = 35/495 (7%)

Query: 463 NFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            F   L     Y +   + E    ++  + D +  W+ + I    +     L+ +G+  D
Sbjct: 512 KFLKKLRGLDKYLQESYETENTYIYKFESKDKKLKWIRMNI--FEDE----LKVLGVVVD 565

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T++      I      D LT + NR++F  ++         D+      ++ D+D  K 
Sbjct: 566 VTKEFIEKRKIEYERDFDILTNLLNRRAFHSQIQE--KFKNKDELKIAAFIMWDLDNLKY 623

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD+ +      + + + +  I++RLSG+ F + +    +   I D   +++
Sbjct: 624 INDTYGHDAGDEYIRCAADILKKFISWNGIVSRLSGDEFYVFIYGYESKDSIRDIINSVK 683

Query: 639 KSIAMPIN--LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           K +   +       E  + AS G + +        E+++ A+ AMY  K+     V  F 
Sbjct: 684 KQMNNTLLKLHDGTEFKIRASAGISWYPDDSTNYDELMRYADFAMYQIKNTIKGEVSEFD 743

Query: 697 VSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           ++ +  D  ++    +L   ++   +   + PI+     ++   EAL++         S 
Sbjct: 744 INIYNKDSFLLSNREELNKLIDGQLVEYAFQPIVDCK-GKVFAYEALMRPKIKT--FSSP 800

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LI---NIASKDLLDNEL 810
            + + +A     +  I      +  +    ++++     +F+  I   N++  D      
Sbjct: 801 IDVIRLARSQSKLYQIERITWFKALKSFKKYKEKFGDCKLFLNSIPNNNLSKVDF----- 855

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E ++ L        +R+ L  +E+  + N +        +    I + LDDFGT  +  
Sbjct: 856 -EEIEDL---YGEYLNRVVLEITENDKI-NEDFIEKKKAYIDHWNIEIALDDFGTGYNGD 910

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           + L YI  D VK + S++ G    E R  IL+++I  +      +IA+ +  + +++ L 
Sbjct: 911 AVLLYIMPDYVKIDMSIVRGIDKDENRQKILKNLISYSNERNIKVIAEGVETKGEMETLI 970

Query: 929 RMGCDYIQDSHVASP 943
            +G DY+Q  +++ P
Sbjct: 971 NLGVDYMQGYYISKP 985


>gi|146291210|ref|YP_001181634.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
 gi|145562900|gb|ABP73835.1| diguanylate cyclase/phosphodiesterase [Shewanella putrefaciens
           CN-32]
          Length = 754

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/762 (16%), Positives = 266/762 (34%), Gaps = 50/762 (6%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           +        +L+    +   ++ + S+    L+           I    S +++  S + 
Sbjct: 23  LLKTSLLRIILLSGAILTTSIVLHSSLMAYQLNLSFV-------IIITVSFLSVLISALW 75

Query: 268 FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII 327
           F   YL  +     +  +  +   CI +              +  + L ++ L+     I
Sbjct: 76  FTRRYLMLS--SISLLAMVVAACICILLFVPDFNLSQAGIIFLYTLPLMALFLFGAKAAI 133

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
                     +LL+    L  I  I + M  T    N ++       + L  + +  T  
Sbjct: 134 IMMFFNVLPFLLLLQNRNLPTIIDIDISMPATHAYLNGLLFTFFNICIPLSAMRLLKTQK 193

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            H        + +    E+ +     +G   +  +     +        I          
Sbjct: 194 IHSQQMIKHHEALQHTLEQYTEIFENNGTASFFCNEDGLILNLNDAAKNIAN-DVRVNQT 252

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            + +          + F     + +    +   L  +  ++  D                
Sbjct: 253 RLSDIFELAEDTPINLFAASFPTHLKNNPKAKYLLQKASLQHHDTLLFHCH--------- 303

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
             D+      A +++  KK         F D +T +PN            + + +  + +
Sbjct: 304 --DVTEQANHAIELSRLKKHHISTH---FYDLVTSLPNE-------NHWYNPAPSVIHQK 351

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI------ 619
            TV ++ ID   +IN   GI +GD +L      + +       + R  G  F +      
Sbjct: 352 MTVAIVKIDNLSQINAAFGIQIGDALLKIFANELKQRFGQHAKIYRFRGASFALEFTSLP 411

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           ++  EN + ++ +      +           E  V  S G  +       + + L    +
Sbjct: 412 LISPENLAQQLRERIPTNLQLKQKRQVEYHLECRVGCSSGTKASPQQA--AEQCL----I 465

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           A+          V    + +   +    K  +  A++ + L +   P + + +  I+  E
Sbjct: 466 AIKQTTQASPVMVYYIGLINNLLEASSQKARIRDALKYNRLEMWLQPQV-MANGHIISFE 524

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL +        I  + F+ I E   +     + +  ++ + I SW    N+PP+ I  N
Sbjct: 525 ALARMFDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPK--NVPPVKIAFN 582

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ +D+L +   + +             +++  +E+ V    + +   L  L ++G+S+ 
Sbjct: 583 LSGQDILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTYKETGRRLNTLARMGVSIA 642

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+ 
Sbjct: 643 IDDFGTGHASLSQLIDISADTIKIDRYFISQLGISERHTQIVNAAILLAKSLKLNVIAEG 702

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           I  E  + +LT +GC   Q      P   N  LK  + + P+
Sbjct: 703 IETEAQLSQLTALGCKQFQGYLFGKPAPANLWLKTFQMQTPM 744


>gi|317055704|ref|YP_004104171.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315447973|gb|ADU21537.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 662

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 189/467 (40%), Gaps = 19/467 (4%)

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           +    W+   +  +SN N  + + +         +K    +   + +D LTGI N   F 
Sbjct: 193 NGFTMWLSTMVFCVSNYNKTLSQALKDER----LEKMNSHLRRISVEDELTGIHNMLYFR 248

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +    +L    TD       +  DI+ +K  N+  G   G+++L  +   I +      +
Sbjct: 249 NEAEKLLGYVTTD-KENAVFLFFDIENFKSFNEKYGFRSGNELLKKVAHMIEDA-YPNSL 306

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           ++R S + F ++  ++                ++  I+ L+ E+ +    G    T+ + 
Sbjct: 307 VSRFSDDHFVVLTHADGCREAA--------DKLSEEISSLQNEVHLQLKCGAYQITNDET 358

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
             S     A  A    K    ++   +        ++   I   +  A+ N+ + + Y P
Sbjct: 359 DPSLACDRARFACNSIKKHFDDNFRFYDKMLEDKFQLKQYIVNSIDNAIANNHIKVYYQP 418

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           ++     EIVGLEAL +W  P++G +    F+ I EE   I  +++ +++ + RD     
Sbjct: 419 VVSTRTGEIVGLEALARWIDPRYGLLPPGAFIEILEEYRQIHKLDICIIDTVCRDYREAC 478

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           +      + + +N +  D    ++ + +     K       + +  +ES ++ +    + 
Sbjct: 479 ES-GEVVVPVSLNFSRLDFELCDIVKELSYRAEKYGVPKEFLDVEITESALVDSQGAMKK 537

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIP 904
            +  LR +G  + LDDFG+  S ++ L    FD +K +   ++      K   I+ +I+ 
Sbjct: 538 AMAELRALGYKVWLDDFGSGYSSMNVLKDHSFDVLKIDMKFLSGFDENPKTKLIINNIVA 597

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + K I+   + + +  +   + L  + CD  Q    + P+    + +
Sbjct: 598 LTKEIDMISLTEGVETKEQFEFLASINCDRAQGYLFSKPVPIEKLRE 644


>gi|327438520|dbj|BAK14885.1| FOG: EAL domain [Solibacillus silvestris StLB046]
          Length = 686

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 195/427 (45%), Gaps = 14/427 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PN   F +     +  +         V ++ ++  +K     G + GD ++ 
Sbjct: 257 YFDALTQLPNHNQFTE--DQHIKKNTK------MVAIVHLNNVEKYILAYGYSFGDAIVK 308

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           S+   +   L     L R   NRF +I     +     +   ++   +  P+N+ ER ++
Sbjct: 309 SVIEIMQTSLPKETKLYRTEANRFTVIHAPAESVQNTINGLRSICLLLERPLNIDERMVS 368

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLC 712
           + A +   S +  K    E   NA   ++    +  + +  +       +    +  D+ 
Sbjct: 369 IEA-VFAVSQSDEKKAVQEHFTNAIAVLHAPSTQSRHGIIKYDPKIHTFNFERQLSLDIQ 427

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++ +EL++VY P +      +VG+EAL++W HP +G IS + F+ I E    I  +  
Sbjct: 428 RAMDENELFIVYQPKVHPEQNSVVGIEALMRWKHPVYGIISPAVFIPILENANRISDVTD 487

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++ER+ + + +W +     P  I INI    L    L + +   + K     S+I+L  
Sbjct: 488 WLIERVCQQLAAWTNIGIELP-QISINIPGMYLTSPRLNKVINRSLLKYKIQASKIELEI 546

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E+ V+ +   +   +   R+ G+S+ LDDFGT  S LSYL  IP  T+K + S + G  
Sbjct: 547 TETSVIHDIHNAISAVRTFREKGLSVALDDFGTGLSSLSYLKEIPISTIKIDKSFIDGVP 606

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSI 949
           ++ K  +IL+SII +  +++  ++ + +  +  ++ +  +     +Q  + + PL     
Sbjct: 607 NSAKDASILKSIIHLCYSLDLNVLVEGVETKEQVQFIMGLEKVPIVQGYYYSKPLTVEEY 666

Query: 950 LKLLKER 956
               K+R
Sbjct: 667 EHWWKKR 673


>gi|156936308|ref|YP_001440224.1| putative phosphodiesterase [Cronobacter sakazakii ATCC BAA-894]
 gi|156534562|gb|ABU79388.1| hypothetical protein ESA_04208 [Cronobacter sakazakii ATCC BAA-894]
          Length = 641

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 190/505 (37%), Gaps = 39/505 (7%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H     +    L++   +     Q        D++   ++       N N        
Sbjct: 171 ILHP--LRDITRTLNALDAHELAHHQLTIPRLHKDDEIGMLVRT----YNRNQQ-----A 219

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +A  + E + S            LTG+PN+   +  L   +            ++ +  +
Sbjct: 220 LAQQLDEARTSGTRF-------PLTGLPNQALLVALLEQAVA-----SGGATALLYVACE 267

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             + I++       + +  +   ++  +L    +LA++S + F II              
Sbjct: 268 PLRDIDES----QREALQRARVEKLRSVLTPRMVLAQISQDDFAIIAHGVKTPEHAVTLT 323

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  ++  P           ASIG A +   + ++S + ++A  A   A+  G N V  
Sbjct: 324 QQLLAALNEPPESDSGAPACAASIGVAMF-DGRQSASTLYQSAISAALDARRNGVNQVAF 382

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S   +     +  +  A+   +  +   P + + + +IVG EAL++   P       
Sbjct: 383 FGESPVSAQ----ESAMQNALARRQYAVWLQPQVDMRNGDIVGAEALLRERQPDGEWTLP 438

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              +   E   +I  +  ++L+   + +  W+    M  + + +N++S  LL  +L + M
Sbjct: 439 VGLIDNIESSGLIVTVGDWVLDEACQLLARWQAHGIM--LPLSVNVSSLQLLKRDLVQTM 496

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              + +   +P  + L  +ES  + + E +  +L  LR+ G+ + LDDFG   S LS L 
Sbjct: 497 LQRLERYAIAPGTLILEMTESQRIDDTEAAIAILRPLREAGVRIALDDFGMGYSSLSQLQ 556

Query: 875 Y---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               +P D++K + S +        +++ +II MAK +   ++A+ I  E     L   G
Sbjct: 557 KMKALPVDSLKIDKSFIDNL-PDDDSVVAAIISMAKKLNLELVAEGIQNEAQRDWLLNAG 615

Query: 932 CDYIQDSHVASPLGFNSIL-KLLKE 955
               Q           +     L  
Sbjct: 616 VTVGQGYLFGKAATPAAFEDAWLTA 640


>gi|146284003|ref|YP_001174156.1| hypothetical protein PST_3691 [Pseudomonas stutzeri A1501]
 gi|145572208|gb|ABP81314.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 348

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 90/342 (26%), Positives = 166/342 (48%), Gaps = 8/342 (2%)

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L+  ++  +    A  + +    P+ + + E  V+ SIG A  +  + ++S++LK  +
Sbjct: 1   MLLLDGSDHARAEQLAQCIIEGFQPPVRIGQYECYVSPSIGVA-ISDGRHSASDLLKQVD 59

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+Y AK  G N    +    S   + R  +++ L  A++  E  L Y   +     E  
Sbjct: 60  LALYAAKDAGRNCTVFYNEALSDAAAGRRALEQALRRALDRDEFVLHYQAQVNAQ-GEPE 118

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            +EAL++W+ P+ G +   EF+ + EE  MI     +++    R    W    +  P+ I
Sbjct: 119 VMEALLRWNSPERGLVPPGEFIPVLEESGMIIEATRWVVREACRQACRWHAMGH--PLRI 176

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++  D    +L   + A++++   SP  ++L  +ES ++   E  +  LGRL+  G+
Sbjct: 177 AINLSPLDFRQADLAGSLLAILAEEGASPDMLELEITESALLEADEHVQQTLGRLKAAGL 236

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L LDDFGT  + L+YL    FD +K +   ++G   +E+ +A++R I+ MA ++   ++
Sbjct: 237 PLLLDDFGTGYASLTYLQRFRFDGIKIDREFVSGLPDSEQSVALVRGILTMASHLGLHVV 296

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  E     L   GC  +Q  H A P         L  R
Sbjct: 297 AEGVENERQAAFLRLNGCPSLQGFHYARPQPAAQCRLQLNGR 338


>gi|218516124|ref|ZP_03512964.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 408

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 187/401 (46%), Gaps = 15/401 (3%)

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            ++++  ++ +D+D +K+IND  G AVGD VL  +++ + E +   D+ ARL G+ F ++
Sbjct: 4   QESVKVALLHVDVDHFKEINDRFGHAVGDLVLCHVSKILLEAISAGDVAARLGGDEFAVV 63

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +  E+   +       +++ +  P+ + ++ + V  SIG AS        + +L  ++LA
Sbjct: 64  IT-EDECDRTIAVLDHIQRRLENPLPVGDQTLIVRCSIGVASAM--SADFARLLSQSDLA 120

Query: 681 MYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +YHAK  G N  E F      +  +   + +DL   +   ++   Y   +      + G+
Sbjct: 121 LYHAKRNGRNRAEIFSDEMASTLANERQLAQDLRSGLALGQIRPFYQVQVDAKSFRVNGV 180

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W HP  G ++ + F+ IA    ++  ++  +L+ +  D+      A +  I + +
Sbjct: 181 EALARWHHPTRGILAPAHFLSIASSNGLVAELDDVVLKAVLSDMK---SSALLEGIRVSV 237

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGIS 857
           N+++  L D EL       +        R+     E++ + +  ++ R  +  ++  GI 
Sbjct: 238 NLSADRLDDPELAAK----LDGYDIPSGRLSFELIETIFLDSLSDQVRQNIEAIKSFGID 293

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
           + +DD G+  + L  L  +  D VK +  L+T   +      ++ S++ +A+ ++  +IA
Sbjct: 294 IEIDDLGSGHASLLGLLELRPDRVKIDRQLVTPILQSVPSRRLVGSLVDIARALDMEVIA 353

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + +        L  +G   +Q      P  F  +   L++ 
Sbjct: 354 EGVETLEHANVLAALGVHTLQGYAFGRPQSFADLSARLEQE 394


>gi|220934403|ref|YP_002513302.1| putative diguanylate phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995713|gb|ACL72315.1| putative diguanylate phosphodiesterase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 694

 Score =  321 bits (823), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 108/576 (18%), Positives = 225/576 (39%), Gaps = 18/576 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+       +H          +     R    +  S D +  +      +        +
Sbjct: 115 LVVTRAAEAQRHWRQLKTQESSLREAERRCKNLLDSSRDAI-AYVHDGMHIYANQSYLEL 173

Query: 438 LGL-ASGSMHGPIRNWLPYIHINDRDNFRTIL---DSFVGYRRGRLQYEFRVRAADNQFH 493
                   + G     +  +   D+   +  L   D            + +++ +  +  
Sbjct: 174 FAYTDPDDLEGMPI--MDMVAKEDQGTLKEFLRNYDHAPEGNESGQSVQIKLKNSAGESF 231

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
              +   P ++ +G+    I I +     K+  + I   A +D +TG+ NRQ F++RL +
Sbjct: 232 TAQMEFTP-ASIDGEPCTQILIRSQAN-TKELEQQINYLAQRDLVTGLYNRQYFMERLES 289

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L  + T       ++ + IDK+++I D +G+A  D VL  + + + +     D++AR  
Sbjct: 290 ALGQA-TQGKGNAALVELQIDKFQEIRDQVGVAGSDLVLGDVGKILEKHCGQNDVVARFD 348

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G  F I+      +   A     ++   A+   +  R IT TAS G      +  +++E+
Sbjct: 349 GEAFAILTSHWETADAEAFLKAMLKDIAALICEVDSRSITCTASAGVTQIDENAPSANEL 408

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIR 729
           L  A  A   A+  GGN   S++       +  +       +  A+    + L+Y P++ 
Sbjct: 409 LSRAAKACEEARKAGGNQAVSYKPKEGEMTQRQLDESWIARITEAIGKHRVRLLYQPVVS 468

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L  E     E L++        I +SEFM  AE   M K ++ +++      ++  R + 
Sbjct: 469 LHGESGERYEVLMRLLGEDGQEIPASEFMPSAERTDMAKVLDRWVISHALDQLVEQRKKG 528

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
                FI   + +  L +  +   +   + +       +     E+ V+ + + ++  + 
Sbjct: 529 KETTFFIK--LTAGSLQEPGMLPWIVEQLKERRIPAECVVFEMKETTVVNHLKPAKEFVR 586

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
            L+ +     LDDFGT  +    L ++P D +K + S M     +E+    +R +   A 
Sbjct: 587 GLKGLHCRFALDDFGTGLNPFQLLQHVPADYLKIDSSFMDRLSSSEENQESIRQLTDGAH 646

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                +IA+ +     +  L  +G +YIQ + + +P
Sbjct: 647 GQNKLVIAQHVEDATGLSILWGIGVNYIQGNFLQAP 682


>gi|160937115|ref|ZP_02084478.1| hypothetical protein CLOBOL_02006 [Clostridium bolteae ATCC BAA-613]
 gi|158440016|gb|EDP17764.1| hypothetical protein CLOBOL_02006 [Clostridium bolteae ATCC BAA-613]
          Length = 1325

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 189/495 (38%), Gaps = 15/495 (3%)

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI-AND 518
            DR    T+L + + +  GR      +   + +  W       +S    ++ R +     +
Sbjct: 829  DRAGAHTMLSAGI-FIEGRYSGMILLVNTETEREWSRAECEAVS----EMARIVASGIKN 883

Query: 519  ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
             +   ++ +        D LTG+  R    DR      +   +      ++  DI  +K 
Sbjct: 884  TSMLIEAKQEAEYYRNHDALTGLM-R---YDRFKESCQMLMDEGKEEYVLVASDIKGFKF 939

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IN+ +G   GD++L      + +     +   R+S ++F    +   +     +    + 
Sbjct: 940  INEAIGYTQGDNILRMFGDMLTQNGLETNCYTRVSADQFLSFGVCGMDRNDFVNMVQGLN 999

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                   N +   I +    G              +  A +A     +   +    F   
Sbjct: 1000 NEFCRMENEIYSNINLMIRSGIYFIEKDCREIETAVDRATIARKSVDYIIRSTSVVFNDG 1059

Query: 699  SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             F S      I   +  A+++ E  +   P + L    IVG EAL++W H     +   +
Sbjct: 1060 PFDSSYRENEIINRMEYALKHGEFKVYLQPKVGLDGLGIVGAEALVRWQHEDGRIVPPGD 1119

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ + E+   I  ++ ++   +   +  W +Q    P+ I +N++S D+   +L   +  
Sbjct: 1120 FIPLFEKNGFITQVDTYVFGTVCSQLSQWMEQGG-EPLPISVNLSSVDIASEQLIPQILE 1178

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +          ++   +E+  + +  R+  ++  L++ G   ++DDFG+  S+++ +  I
Sbjct: 1179 ITRACGLDHKYLEFELTETAFLSDSARTFHVMKTLQEEGFITSIDDFGSGYSIMNMMADI 1238

Query: 877  PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K +   +   T+  +    L  +I M   +    + + I    ++K L  MGC+ 
Sbjct: 1239 PTDVIKLDCGFVQSCTKTGRGREFLGQLIQMTNKMGFISLCEGIETAQELKMLREMGCEL 1298

Query: 935  IQDSHVASPLGFNSI 949
             Q  + + PL  N  
Sbjct: 1299 GQGYYFSRPLPMNVF 1313



 Score =  183 bits (466), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 115/281 (40%), Gaps = 9/281 (3%)

Query: 424 VRDRVTTTPDIATILGLAS----GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            R       ++ ++ G         + G        + + D       +   +   +  +
Sbjct: 36  DRRLDIVNHELLSLFGCTDTKELEELTG--GTLKGMLDVRDHARVLDEVLEQLHQGKEII 93

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + +FR+R+ +    W+  R R + +  G+      +  D TE +   +     + +D+LT
Sbjct: 94  KAQFRIRSRNGGICWVDFRGRVVEDERGN-NWVHAVMIDDTEAQNQKQEYWEKSMRDSLT 152

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR + +  +   +       +   T+MVID+D +K+IND  G   GD VL    R I
Sbjct: 153 GLFNRDAAVQSVNRYMQDGDKAPD--GTLMVIDLDNFKEINDTKGHLFGDSVLTEAARCI 210

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +    D++ R+ G+ F +     +   +I      + + IA   ++ +    ++ SIG
Sbjct: 211 AGVFDSQDMVGRIGGDEFLVFSKQLSGREEIMKRGRQLIEDIASLPSVKKSGSKLSCSIG 270

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            A + +   T  ++   A++A+Y  K+ G      +  S  
Sbjct: 271 AAVYPADGSTYEQLFLKADMALYAGKNWGKGRCVVYDPSLR 311



 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT +    +F ++    L+           + ++D+D +K+IN+  G   G+ VL++
Sbjct: 532 FDALTNLLTAGAFQEQTEQYLETGPA--PYTTALFILDMDDFKRINEEKGKLFGNVVLMN 589

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI-NLLEREIT 653
           +   + +  +  D++AR  G+ F ++L +  N    +     ++K I   + +   ++  
Sbjct: 590 VANSLKQACREGDLIARFGGDEFLVLLKN-TNREDASAAGRTIQKEIGGILSDTGSKKER 648

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           ++ S+G       +   S+++  A  A+   K  G   +  +     + +  +  + L  
Sbjct: 649 ISCSMGVRLAGEGERNFSDIIVKANQALLQVKKSGKGGILFYEAVEDKENGSISYDYLKQ 708

Query: 714 AVENSE 719
           A E   
Sbjct: 709 AREAKR 714


>gi|119944362|ref|YP_942042.1| cyclic-di-GMP regulatory protein [Psychromonas ingrahamii 37]
 gi|119862966|gb|ABM02443.1| regulatory protein for cyclic-di-GMP, EAL/GGDEF domains
           [Psychromonas ingrahamii 37]
          Length = 554

 Score =  321 bits (822), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 194/436 (44%), Gaps = 10/436 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K  +  +      +  T +PN+ + L ++  I+   ++   L   V  I ++   ++ + 
Sbjct: 118 KTHIIQLNWILQHNASTRLPNQLALLKKIPLIVKEKSSHCTLILAV--ISLENSMELKNA 175

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G+ V  +++  L +R+ ++        ++  ++  +++++ +++ K       +     
Sbjct: 176 FGLGVIQEIIQQLAKRLKDIEIKNYT-YQIETSQ--LVILAVDSAQKNEAIYHEIAGISR 232

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFR 701
            P    E  I V   +G + ++         L+ A  A+  A+ R       S  +    
Sbjct: 233 EPFTFNEIFIHVDIRMGISEFSQLVQAPIIYLQEAVRALAVAQERKIDRVTYSAEIKLHD 292

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  V    +L  A+   EL + Y P I +    I  +EAL++W+HP+ GNI    F+  A
Sbjct: 293 TGNVAFLGELKKAIAEGELSMHYQPKIDIPTGNIHSVEALMRWNHPEKGNIPPCLFIPRA 352

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I  +  F L+   + I+ WR       I + +NI+  DLL       +  L+ K 
Sbjct: 353 EQSTLINLLTEFALDEAIKQIVQWRQ--YDINIPVAVNISINDLLHPGFYNLIANLLDKY 410

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   ++L  +E V++ + E+S   L +L+K+ IS ++DDFGT  S L YL  +P   +
Sbjct: 411 GVSGEFLELELTEGVMIIDMEKSNAELMKLKKLNISFSIDDFGTGYSSLQYLHLLPISFI 470

Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +R   +I+ + + +A  +    IA+ +  +     L  +GCD  Q   
Sbjct: 471 KIDQSFVRRLPSERHGVSIVEATVMLANKMGIKAIAEGVENKESYDFLENIGCDIAQGYL 530

Query: 940 VASPLGFNSILKLLKE 955
           ++ PL  +   K   +
Sbjct: 531 ISRPLPADDFTKFYLQ 546


>gi|320330394|gb|EFW86373.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 289

 Score =  321 bits (822), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 79/284 (27%), Positives = 147/284 (51%), Gaps = 5/284 (1%)

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MYHAK  G N+ + +  +   S    +  +  L  A++  E  L + P + L D  I GL
Sbjct: 1   MYHAKKSGRNNYKFYNATINESLVRRLQTETLLRGALDRDEFILHFQPKVSLTDGRISGL 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP+ G +S +EF+ I E+  +I  +  +++  +   I SW ++ N+  + I I
Sbjct: 61  EALLRWNHPEQGMVSPAEFIPILEDTGLIIPVGEWVIRNVCETIKSW-EENNVRQVPIAI 119

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ + L    L E ++ ++     +P+ ++   +ES++M +PE +  +L  ++  GISL
Sbjct: 120 NLSVRQLQVKGLAETIKHIVEGYGINPALLEFELTESMLMIDPESAVNILRDIKSYGISL 179

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL   P D +K + + +       +  AI R++I +A  +   +IA+
Sbjct: 180 SVDDFGTGYSSLAYLKRFPLDALKIDRAFIKDITSNHEDAAITRAVIVLAHELGLKVIAE 239

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLV 960
            +     +  L   GCD +Q    + P+       ++K    L 
Sbjct: 240 GVETVDQLALLVTYGCDQMQGYLFSKPVIIEECASMIKSSRSLS 283


>gi|169830879|ref|YP_001716861.1| diguanylate cyclase/phosphodiesterase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637723|gb|ACA59229.1| diguanylate cyclase/phosphodiesterase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 574

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 181/428 (42%), Gaps = 19/428 (4%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   +  D LTG+ +R+ F + L   ++ +        ++  IDID  K IND+ G  
Sbjct: 149 RQMQMFSTVDVLTGLLSRRKFEEELQQAIEFARCTKG-EFSLYWIDIDNSKLINDIYGYT 207

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK---IADFAIAMRKSIAM 643
           VGD VL  +   + E       +AR+  + FGI+L+    +            + +  + 
Sbjct: 208 VGDIVLKVVAGFLQESFPDAFTIARIGSDEFGIVLMDTGPAEALAKAQVLCHGIAELQSR 267

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P  L E  I +T+SIG AS+       ++++  AE+A   AK +G N  +        ++
Sbjct: 268 P--LGEEGIFITSSIGVASYPHHGQALADLMLAAEVAQVTAKRKGRNRAQLIDAVDESTN 325

Query: 704 R---VMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                     L  A+ + E +   Y PI+ L   + +G E L +    +   +S+  F+ 
Sbjct: 326 PTVVHERILLLREALRSKECIVPFYQPIVDLETGKPLGYEVLARVRRGE-KFLSAGLFIE 384

Query: 760 IAEELCMIKAINLFMLERIARDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            AE+  ++K I   ++E+  R+  S W            IN + ++L + E    +  L 
Sbjct: 385 AAEQSGLMKDIGNIVIEQAMREKKSSWAKSKL-----FFINFSMRELENRETPGFLADLF 439

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S+    P  I    +E   + +          L  +G+ L +DDFG+  S   YL Y   
Sbjct: 440 SRYGIRPEEIVAEITEREAVLDINAMHAFAKELTDLGVRLAVDDFGSGFSSFIYLRYFDC 499

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
              K  GSL+     + +   I+ +++ + + +   ++A+ +      + L R G  Y Q
Sbjct: 500 YFAKIEGSLVREITRSGRSRMIVENMVKLLQGLSIEVVAEFVENRETAEILRRAGVRYGQ 559

Query: 937 DSHVASPL 944
             ++  P+
Sbjct: 560 GYYLGMPV 567


>gi|225849942|ref|YP_002730176.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225645756|gb|ACO03942.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 688

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 187/422 (44%), Gaps = 36/422 (8%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D LTG+PNR +F   +   +          P  ++I+ID +K+IND  G   GD VLV
Sbjct: 290 TTDELTGLPNRLAFN--IDKKISK-------NPAFILINIDNFKQINDFYGTDTGDFVLV 340

Query: 594 SLTRRIGELLKFPD---ILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLE 649
            +   I   +K  +    + R+  + FGI++    +   +      +   I      L +
Sbjct: 341 KVGEIISRFIKEKNIKGTVYRIGADDFGILVEDNTD--NVEHITKQLLTRIEKHRFKLAD 398

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVM 706
            ++ +  S G ++          + + A++A+   K     ++        +    + + 
Sbjct: 399 IDLFINVSAGISTERP-------LFEKADMALKRIKELKKKYLVYNEELDLAKDIGNNLK 451

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I   +  A+E+  ++ V+ PI  + DE+I   E L++    +   I  + F+ IA+E   
Sbjct: 452 ILSIIKDAIESERIFFVFQPIKSVKDEKIDKYEVLVRIKDREGNIIEPNVFIPIAKESGY 511

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM-QALISKTLYSP 825
              I   +LE+  + I  +       P    IN++ +D++D +  + + + +I+K     
Sbjct: 512 YGYITRTVLEKTLKLIEEY-------PYRFSINLSIEDIMDPDTRDFIYEKIITKREL-A 563

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R+ L   ES   GN E S   + +++  G+ + +DDFG+  S  S++  +  D +K + 
Sbjct: 564 ERLTLEILESESAGNYEDSHEFVKKVKMCGVQIAIDDFGSGYSNFSHVLNLEPDYIKIDA 623

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL+    +      ++ +II  A  +    IA+ ++ +   + +  +G DY+Q  ++  P
Sbjct: 624 SLIKNIDKDIYSQVVVSTIITFASKLGIKTIAEFVHNDSIYEIVKDLGVDYVQGYYIGKP 683

Query: 944 LG 945
           + 
Sbjct: 684 ID 685


>gi|118589843|ref|ZP_01547247.1| hypothetical protein SIAM614_14300 [Stappia aggregata IAM 12614]
 gi|118437340|gb|EAV43977.1| hypothetical protein SIAM614_14300 [Stappia aggregata IAM 12614]
          Length = 646

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 101/439 (23%), Positives = 203/439 (46%), Gaps = 17/439 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKIND 581
           ++ +E +      D++TG+ N + F + +    +  A        ++ ID++ +   IN 
Sbjct: 203 REQMELLEHRLNHDSVTGLINYRVFAETVRATHETLAA--GQTLAILNIDLESRLPAIN- 259

Query: 582 VLGIAVGDDVLVSLTRRIGELLKF---PDILARLSGNRFGIILISENNSL-KIADFAIAM 637
              +A  + +L S    +   +      + LAR +G  F ++ IS+ +     +  A  +
Sbjct: 260 KFSLATEEAILTSTADLLRHAVDRMEGENCLARSAGKGFLLMTISDEDLGLTASVIANRI 319

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
                 PI        ++ +IG+A  T+ +  ++++++NA+LA+ +A +     V ++  
Sbjct: 320 HDIFLRPIPTAVGSFLISPAIGYADSTTVERDAADIIRNADLAVSNAVNYSRRRVVTYEP 379

Query: 698 SSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +          ++  L  A+E +E    + P   LM   I G+EAL +W H + G IS S
Sbjct: 380 AMRAEMERRTIVENALARAIEANECLPHFQPQFNLMTGRIFGVEALARWYHSELGWISPS 439

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ IAE    I ++   +LE    ++     Q     + + +N++   +L +++   + 
Sbjct: 440 EFIPIAERNGDIVSLGWKILETSCSEV-----QLLPSDLSLSVNLSVAQILSDDVVAMLD 494

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +T    SR+KL  +E+ +M +  R +  L  LR +GI ++LDDFG   S LSYL  
Sbjct: 495 ECLGRTGLPASRLKLEVTETTLMSDLRRIQTTLSELRSLGIGISLDDFGVGYSALSYLTD 554

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
             +D +K + S  T + + +    IL+ ++ +A+ + + ++ + I        L  +GC 
Sbjct: 555 FDWDEIKIDRSFATKAVKDKKLRDILKMVLGIAETMGSQVLIEGIETVEQRDVLVDIGCT 614

Query: 934 YIQDSHVASPLGFNSILKL 952
             Q      P+  + I  L
Sbjct: 615 IGQGYLFGGPMAIDDITTL 633


>gi|297569824|ref|YP_003691168.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925739|gb|ADH86549.1| diguanylate cyclase/phosphodiesterase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 711

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 193/446 (43%), Gaps = 32/446 (7%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           IL  +    +     +  + +   A +D LTG+ NR +F          S       P +
Sbjct: 286 ILLLVKTERENQALNRMSQALHRAATRDQLTGLANRFAFD---------SDQGRCRHPLL 336

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENN 626
           ++I+ID +K +ND+ G+  GD VL  L   +   L  +      RL G+ FG++L   + 
Sbjct: 337 LLINIDDFKHVNDLYGVRAGDYVLTELAAILRRQLPAQPWGRCYRLGGDDFGLLLDEADT 396

Query: 627 SLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           +++    A  +  ++     N  ++ I +  SIG +           +L+ A+LA+   K
Sbjct: 397 TVQPQSLAQQVLAAVDQSEFNYRDQPIRINVSIGISRLRP-------LLETADLALNEVK 449

Query: 686 HRGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                    ++         +D + + E+   A+ N ++ + Y PI+     +IV  E+L
Sbjct: 450 KLRRGSFLIYQEELNLQERIADNLQVLENARRALSNDDVLVYYQPIVDNRTGKIVKFESL 509

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++  +P    +S   F+ + +E  +       M+++   D+   R           +N++
Sbjct: 510 VRLRNPDGQVLSPVMFLDVVKESSLYPEFTRRMVDKTFADLADCRYGF-------SLNLS 562

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D+++ E+ + + A I        R+     ES  + N    +  + R++  G  + +D
Sbjct: 563 IADIVEQEVQDFIMAKIKAHPEIARRLTFEILESEGVENIALVQSFIERVKAAGCQIAID 622

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S  +++     D++K + +L+    + + A  ++R+I+   + +    +A+ ++
Sbjct: 623 DFGSGYSNFAHILQFKVDSIKIDATLIRNIHQDQQAQVLVRTIVDFCRQLGINTVAEFVH 682

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLG 945
            E  ++ +  +G DY Q   +  P  
Sbjct: 683 SEEVLQVVKELGIDYSQGYFLGKPAP 708


>gi|300868158|ref|ZP_07112790.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300333782|emb|CBN57970.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 460

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 4/280 (1%)

Query: 679 LAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
            A++ A+        ES   ++  ++++ ++ ++  A+  +E  + Y P + L   EI+G
Sbjct: 131 QALHQAEARLNDLVNESVITNTISNEKLALEIEIRHALAQNEFEVYYQPQVELATGEIIG 190

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EAL++W+HP+ G IS +EF+ +AEE  +I  +  ++L         W          I 
Sbjct: 191 AEALVRWNHPEKGTISPAEFIPLAEETGLIIQMGEWVLFTACTQTAWWIAS-GFANFRIS 249

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +N++ + L D +L   +  ++  T   P  ++L  +ES VM N   +   L  L+ +GI 
Sbjct: 250 VNLSVRQLSDPQLLPRIIEILKVTGLEPGNLELEVTESAVMENVAVATATLNELKSLGIR 309

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  + L YL   PFD +K +   ++   S     AI  ++I +A N+E T+IA
Sbjct: 310 IAIDDFGTGYASLGYLKQFPFDCLKIDKCFVSNVASDAHNKAITTAVIQLAHNLELTVIA 369

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + +  E ++  L    CD IQ    +           L  
Sbjct: 370 EGVETEAELDFLRDKQCDIIQGYLFSPAKPAAEFETFLTA 409


>gi|295093923|emb|CBK83014.1| diguanylate cyclase (GGDEF) domain [Coprococcus sp. ART55/1]
          Length = 563

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 185/424 (43%), Gaps = 16/424 (3%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N+ S +      ++L         T +  +I  +K +N V   + GD +L +    
Sbjct: 147 TGVANQNSLMYY---AVNLIKNGRIGDYTGIFFNIHNFKYVNKVFDYSQGDVILRNYAHM 203

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   L   + +ARL G+ F +I  +EN S  I+         ++     ++RE+ +  + 
Sbjct: 204 VKSYLDSDEEIARLGGDNFVVICRNENASDFISKIKDV---HMSHEFRSVKRELQLGVTA 260

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVE 716
           G A          E++    +A   A+  G   +  +     +   D   I      A+ 
Sbjct: 261 GIACL-EGVDKPREVMARTSIAYQAARKTGAGSIVVYTKEIQKQLMDDQEILAAFPQALA 319

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             E  + Y P +R+ D+ I G EAL++W       ++ + F+   E    +  ++ +MLE
Sbjct: 320 AGEFVVYYQPKVRIADKSIYGAEALVRWVR-DGQVVTPARFIPQFEREGSVCRLDYYMLE 378

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           ++   + S  D+     + + +N + + L + +L E +   I +     S I++  +ES 
Sbjct: 379 QVCGFLKSRLDKGLKI-VPVSVNFSRRHLEEGDLVERITGTIDRFGIDRSYIEIELTESE 437

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEK 894
              N E    ++GRL++ GIS ++DDFGT  S L+ +  +  DT+K + SL+        
Sbjct: 438 DYQNYEIMSSVIGRLKERGISTSIDDFGTGFSSLNMIKKVDLDTIKIDKSLIPFDDVNNN 497

Query: 895 R-IAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +   I+   SII +   +    +A+ +     +  L ++GCD +Q      PL  +   +
Sbjct: 498 KHQDIVMFASIIDLIGRLGKKSVAEGVETTQQLDYLEKLGCDIVQGYVFDKPLPKDEFEQ 557

Query: 952 LLKE 955
            L+ 
Sbjct: 558 RLES 561


>gi|254457955|ref|ZP_05071382.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207085348|gb|EDZ62633.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 646

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 182/425 (42%), Gaps = 31/425 (7%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +    + D LTG+PNR S L+ +                +++++ID +K+IND  G   
Sbjct: 240 ELRKQLYIDTLTGLPNRHSLLNDII---------GTNDGALIIVNIDDFKEINDFFGQIT 290

Query: 588 GDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMR-KSIAMP 644
           GDD+L S   ++  +        ++RLSG+ F I    +    +  + +  +      M 
Sbjct: 291 GDDILKSFAYKLSNMFNKDHYTTISRLSGDEFAIFFTKKPLLKEFIEISKKLVVDVEKMI 350

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFR 701
                 E+++  + G +           +L+ A++A+  AK +  +   + E   +    
Sbjct: 351 FLYENNELSIRVTAGCSY------QIDNVLEKADIALKSAKKQQKSFLLYDEKLNIEEQY 404

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            D +   + L +A+++ ++   + PI     ++I   E LI+        I   +F+ IA
Sbjct: 405 KDNIEWVKKLKIAIKDDKIVPYFQPIFDNTSDKIASYECLIRLIDEDDRVIGPYKFLTIA 464

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           ++  +   +   M+E+  +                 IN++ +D+L+ ++ E ++  I + 
Sbjct: 465 KKSRLYSNLTKIMIEKSCKY-------FENINCDFSINLSVEDILNKDIVEYIKQKIKQH 517

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S  +I     ES  + N E   +    ++ +G  + +DDFG+  S   +L  +  D +
Sbjct: 518 NVS-KKIIFEILESEGIENYEDISIFTNEMKTLGCRIAIDDFGSGYSNFEHLLQLKIDYI 576

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G+L+           ++ +I+  A+ +    +A+ ++ E   K++  +  +  Q   
Sbjct: 577 KIDGTLIKNIDHDINSQIVVETIVNFAQRLNILTVAEFVHNEDVYKKIKSLQINRTQGFF 636

Query: 940 VASPL 944
           ++ PL
Sbjct: 637 LSEPL 641


>gi|160936745|ref|ZP_02084112.1| hypothetical protein CLOBOL_01636 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440536|gb|EDP18281.1| hypothetical protein CLOBOL_01636 [Clostridium bolteae ATCC
           BAA-613]
          Length = 716

 Score =  320 bits (821), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 97/500 (19%), Positives = 202/500 (40%), Gaps = 47/500 (9%)

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI------ANDIT-------------EQ 522
           E+R+           +   P+    G I+ ++G+        D++             E+
Sbjct: 228 EYRILHDQGIE---SLSAAPLM-KQGKIIGFLGVDNPTENVEDLSLLRSVCGFVLDEMER 283

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++ +E +  +++ D LTG+ NR  ++ +L  +    +        V+ IDI+  KK+ND 
Sbjct: 284 RRLIEELERSSYTDLLTGVSNRNCYIKKLNQL----SCSTLHTLGVIYIDINGMKKLNDN 339

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD V+ ++   +    +      R+ G+ F ++  +          A ++R+   
Sbjct: 340 FGHEYGDRVIQNVADILRARAESNAF--RVGGDEFVVLCENTK-QEDFQALAESLRRDFE 396

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
              +          SIG        I+    +  A+  MY  K    + +      +   
Sbjct: 397 ESRDFE-------VSIGCTWKDRD-ISVDNEIMRADDLMYAQKQGYYHTILHGGGHTRTG 448

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               I  ++   + +    + Y P I L    I+G EALI+        I   +F+   E
Sbjct: 449 ----IATEILREIADRRFVIYYQPQISLKTGRIMGAEALIRKRDDSGRLIPPDQFIPYYE 504

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  ++L + + +  D+  W  Q       I  N +   L+ +++ + +  +     
Sbjct: 505 RERVISHLDLHVFQTVCSDLREWAKQG--VKTRISSNFSRMTLMASDIVQQLAQICRDYD 562

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               ++ +  +ES+      +   L+  L   G S++LDDFG++ S LS L  + F+ +K
Sbjct: 563 VPTQQLTIEVTESISKLEAGQLLTLMRLLLGEGFSISLDDFGSQYSNLSILTMLEFNEIK 622

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTI-IAKDIYGEIDIKELTRMGCDYIQDSH 939
           F+ SL+           ++++ + + + +  T  +A+ I     ++ L +  C+Y Q  +
Sbjct: 623 FDKSLVEELGSNIKSRVVMKNAMQICRELPKTCSLAEGIETIEQLELLRQYQCEYGQGYY 682

Query: 940 VASPLGFNSILKLLKERFPL 959
            A P+   + L LLK+   L
Sbjct: 683 FAKPMKVEAFLDLLKKEQAL 702


>gi|304397592|ref|ZP_07379469.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. aB]
 gi|304354764|gb|EFM19134.1| diguanylate cyclase/phosphodiesterase [Pantoea sp. aB]
          Length = 518

 Score =  320 bits (821), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 96/441 (21%), Positives = 198/441 (44%), Gaps = 21/441 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + +++ +  L  A  D LTG+ NR+SF   + ++            T+ +++++ +K 
Sbjct: 74  IRKTRRAEKNALRLAGTDELTGVMNRRSFNAHIASLKAC-----GAAYTLTLLNVNHFKS 128

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND+ G   GD  L++L   +         + R+ G+ F  I+  ++ + +   FA ++ 
Sbjct: 129 INDLNGHRQGDATLIALADLLTASAGSTSKVFRVGGDEFA-IVAEDSQAEQAQTFAESLC 187

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +  A  I        ++ S G AS   +    +++++ A+LA+Y AK    +H+  F   
Sbjct: 188 EQ-AASIRTGPHTF-LSLSAGIASSACTGQ--ADVMRAADLALYEAKQDKCSHLARFSPD 243

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                     +++++  AV    +     P++ L    I G E L +W       +S +E
Sbjct: 244 MELRFPQREWLEQEVVAAVSGHAIVPFLQPLVSLRTGNITGFEILARWITASGQTVSPTE 303

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + E L ++ ++ + +L+       +W        + + +NI  + LL   L   +  
Sbjct: 304 FLPVVERLGLMDSMTVALLQDAVSATRAWPA-----GLCLSLNITPEQLLRPSLTSCLSR 358

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++      P  ++L  +E  VM   + +R  + +L++ GI + LDDFGT  S LS L  +
Sbjct: 359 IMQHAG--PVMLELEITEQNVMAISDDAREAIRQLKETGIGVVLDDFGTGYSNLSVLLGL 416

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K + S + G     ++  ++ +++ + + +   I A+ I     ++ L + GCDY
Sbjct: 417 GITKIKIDQSFIAGIVTGSEQRKVVETLLALCQGLNVVITAEGIEDVATLRWLRKRGCDY 476

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    + P+       LL  
Sbjct: 477 GQGYLFSRPVPAGQATTLLAS 497


>gi|257095380|ref|YP_003169021.1| periplasmic/7TM domain sensor diguanylate cyclase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047904|gb|ACV37092.1| periplasmic/7TM domain sensor diguanylate cyclase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 649

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 107/677 (15%), Positives = 209/677 (30%), Gaps = 92/677 (13%)

Query: 24  WMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEV-----S 78
           +  SP  A   + I  +   + L     +  +      +      +  SR   V      
Sbjct: 48  FASSPVSAQ--VRIGPTTTEVALRPFIEVLEDPDGQLTISDVEQPEIASRFRYVAGSGDL 105

Query: 79  ASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSL 138
                    W     A  + +    L+ + +  L     F+ D G  R            
Sbjct: 106 NFGYSASAYWLRMTFAPEAGAARRWLLEIAYPSLDQLAVFA-DHGDVRRRQDAGDLQPFS 164

Query: 139 DRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKDTVNSFTLYRGIII 196
            R     + VF + +  G+     + I++       + LW P               I  
Sbjct: 165 ARPFTHRNFVFPLDLLAGSEQRVHVRIASSGSLTLPVTLWSPAALHGNDQVVYTILAIYF 224

Query: 197 GVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRA 255
           G+   L ++  + Y+  R S+ +   A A  ++   S  FG  ++           +   
Sbjct: 225 GMLLALGLYNLLLYVSLRESIYLVYVAFAAAMVIGQSSMFGLANQFLWPDWPTWGHVALP 284

Query: 256 CSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITL 315
                 +    +F  M+L   +    +     +      +    + +Y    A IA   L
Sbjct: 285 LGYCLAAYFGALFTQMFLGTKQTTPVLHRWIHALQIGFLLTALTAIFYAYRPAGIATALL 344

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
            +                 +       A + +  W +                  L+ G+
Sbjct: 345 GTAFAVTAVVTAGLCAARAQPG-----ARLFLVAWSL------------------LLLGV 381

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
            +I +     +  ++L       G   +    S A+              DR+       
Sbjct: 382 AMIALRTLNWLPSNLLTLYAMPVGSALEMLLLSFALA-------------DRIHVVRREK 428

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +    + ++   +                  +D+     R     E RV     +    
Sbjct: 429 ELA--QAEALRAKV----------------AAMDALQQSERT---LEQRVVRRTAELAEA 467

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             R                        ++S   +   A  D LTG+ NR    D L   +
Sbjct: 468 NER-----------------------LRQSEAELRKLAHHDPLTGLANRSLLYDELRRSI 504

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                       V++ID+D +K +ND  G AVGD +L  +  R+ E ++  D++ARL G+
Sbjct: 505 ARGKR-GGETFAVLMIDLDGFKPVNDTYGHAVGDRLLEVIAPRLQECVRVSDVVARLGGD 563

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F +++    +  +       +   ++ P+++   +I V AS+G A W      +  +L+
Sbjct: 564 EFVVVVEGVLDQHQALAIGAKIIAVLSQPLHIGAHDIQVGASVGVALWPQDGDDTQHLLQ 623

Query: 676 NAELAMYHAKHRGGNHV 692
           +A+ AMY AK  G    
Sbjct: 624 SADRAMYLAKQAGRGCC 640


>gi|297516280|ref|ZP_06934666.1| cAMP phosphodiesterase [Escherichia coli OP50]
          Length = 330

 Score =  320 bits (820), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 154/331 (46%), Gaps = 7/331 (2%)

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +R  ++ PI + ++   +T SIG +           +L  A  AM + +  GGN  
Sbjct: 1   IADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTAHNAMDYIRKNGGNGW 58

Query: 693 ESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           + F  +     +  +     L  A+ N++L LVY P I     E+ G+EAL +W  P  G
Sbjct: 59  QFFSPAMNEMVKERLFLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPLHG 118

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           ++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  + +N+++     N+L
Sbjct: 119 HVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA-LSVNLSALHFRSNQL 177

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +        ++ +  +ES++M +       +  LR +G+ L++DDFGT  S L
Sbjct: 178 PNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGL 237

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S L  +P   +K + S +     ++   A+L +I  + +++  T++A+ +  +   + L 
Sbjct: 238 SRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETKEQFEMLR 297

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
           ++ C  IQ    + PL    I   +    PL
Sbjct: 298 KIHCRVIQGYFFSRPLPAEEIPGWMSSVLPL 328


>gi|217975341|ref|YP_002360092.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223]
 gi|217500476|gb|ACK48669.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS223]
          Length = 754

 Score =  320 bits (820), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 121/762 (15%), Positives = 267/762 (35%), Gaps = 50/762 (6%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
           TI        +L+    +   ++ + S+    L+           I    S + +    +
Sbjct: 22  TILKTSLLRIILLSGAMLTASIVLHSSLIAYQLNLAFI-------ISITVSFLTVLFLTL 74

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
            F   YL  +     +  +  +    I +              +  + L ++ L+     
Sbjct: 75  WFTRKYLLAS--SISLLAMVIAACISILLFVPDFNLSQAGITFLYTLPLMALFLFGRKVA 132

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +          +LL+    +  I  I + +  T    N ++       + L  + +  T 
Sbjct: 133 VIMMFFNVLPFLLLLRNQNIPPIIDIDISLPATHAYLNGLLFVFFNICIPLSAMRLLKTQ 192

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             H          +    ++ +     +G   +  +     +        I G       
Sbjct: 193 KVHAQQMIQHQNDLQRTLDQYAEIFENNGTASFFCNEDGVILNLNNAAKEIAG-EVTLNR 251

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             + +          +       + +                +N   +++ +     +  
Sbjct: 252 TRLCDIFELTEDTSTNLLAAAFPTHLKN--------------NNSIKYLLQKASLEHHDT 297

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA-------FQDNLTGIPNRQSFLDRLTTILDLSA 559
                 +   +D+TEQ      +           F D +TG+PN            + + 
Sbjct: 298 -----LLFHCHDVTEQANHAIELSRLKKHHISTHFYDLVTGLPNE-------NHWYNPAP 345

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           +  +L  TV ++ ID   +IN   GI+VGD +L +    +         + R  G  F +
Sbjct: 346 STIHLDMTVALVKIDNLSQINAAFGISVGDAILKAFATELKNRFGHHAKIYRFRGASFAL 405

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAE 678
              S        + A+ +R+ I   + L  E++I           + +K +  +  +   
Sbjct: 406 EFTSLPLISP-ENLALQLRERIPTNLQLKHEQQIEYHLECRVGCSSGNKASPQQAAEQCL 464

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +A+          V    + +   +    K  +  A++++ L +   P +R  D  I+  
Sbjct: 465 IAIKQTTQASPVMVYYIGLINNLLEASSQKAKIRDALKHNRLEMWLQPKVR-ADGHIISF 523

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +        I  + F+ I E   +     + +  ++ + I SW     +  + I  
Sbjct: 524 EALARMFDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPKNVPL--VRIAF 581

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ +D+L +   + +             +++  +E+ V    + +   L  L ++G+S+
Sbjct: 582 NLSGQDILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTHKETGRRLNTLARMGVSI 641

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+
Sbjct: 642 AIDDFGTGHASLSQLIDISADTIKIDRCFVSQMGISERHTQIVNAAILLAKSLKLNVIAE 701

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            I  E  + +LT +GC+  Q      P   N  LK  + + P
Sbjct: 702 GIETEAQLLQLTALGCEQFQGYLFGKPAPANLWLKTFQMQTP 743


>gi|332715993|ref|YP_004443459.1| diguanylate cyclase [Agrobacterium sp. H13-3]
 gi|325062678|gb|ADY66368.1| diguanylate cyclase [Agrobacterium sp. H13-3]
          Length = 664

 Score =  320 bits (820), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 105/441 (23%), Positives = 198/441 (44%), Gaps = 19/441 (4%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +QK + E    +L  +  D+LTG+ NR++    L  +L  + +       V +ID+D +K
Sbjct: 214 QQKAADERGQALLRLSNTDSLTGLQNRRAIDQHL-RLLWDNWSKKGEGFAVFLIDVDFFK 272

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFP-DILARLSGNRFGIILISENNSLKIADFAIA 636
           K ND  G   GD  LV++   + + +      + R  G  F I+L    +  ++ + A  
Sbjct: 273 KYNDRYGHQEGDKCLVTVGNALQDAIIDHGASIGRYGGEEF-IVLAPFKSRQQVGELAET 331

Query: 637 MRKSIAMPINLLERE----ITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNH 691
           +R ++       ++       VT SIG +    +      +++  A+ A+Y AK  G N 
Sbjct: 332 IRHTVEDLSLSHDQRRDGTFIVTVSIGASFTRPNPDGKLEKIINEADRALYIAKANGRNC 391

Query: 692 VESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           ++ F         +   I   L +AV  + + LVY PI+ +   E  G EAL++      
Sbjct: 392 MKLFDPDDPQTSDETENIAALLKIAVAENLVSLVYQPILNISTNETAGAEALMRLRLLDG 451

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G++S   F+ IAE    I  + L+ ++   R I++    + +             L +  
Sbjct: 452 GSVSPGTFIPIAERTGTIMELGLWTIKTACRQILADDKVSVVSVNVS-----PMQLKNPG 506

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               + A++ +   +  R+    +E + M         L  L+ +GI++ LDDFGT  + 
Sbjct: 507 FATSVAAILVEAGIAGGRLAFEITEGLDMEMHSDVLRCLNDLKTLGINIWLDDFGTGFAG 566

Query: 870 LSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           LS+L    FDTVK + S +  S T +  A+L+ +I + +N    I+ + +  E  ++ + 
Sbjct: 567 LSWLRMTDFDTVKIDRSFLHDSKTPRGRAMLQDMIRLIRNRGHKILIEGVETEEQLRLVR 626

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
           ++  DY Q  ++  P+    +
Sbjct: 627 QLEIDYAQGYYIGRPVVAERL 647


>gi|309775880|ref|ZP_07670874.1| putative sensory box sensor/GGDEF/EAL domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916418|gb|EFP62164.1| putative sensory box sensor/GGDEF/EAL domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 585

 Score =  320 bits (820), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 82/420 (19%), Positives = 164/420 (39%), Gaps = 10/420 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT I N + F + + ++L+ +         +    I  ++ IN   G A GDDVL  +
Sbjct: 161 DALTHIYNLEGFAEAVQSVLENTKQQ----FALFKFGIRDFRFINQTHGYAFGDDVLKCI 216

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            R +  + +  ++ AR+  + F ++    N            +  +   I    +     
Sbjct: 217 ARNLSSICQKEELCARIEKDTFAVLFHFTNKKELHNRLHNIRKHLLDEHIEKRLKHPIQY 276

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---FRSDRVMIKEDLC 712
               +        +   ML  A LAM + +    N    +        ++    + E+  
Sbjct: 277 IGGVYLIQAGHTESIKSMLDKAVLAMQYVERSSRNSDFLYFEDWMLNQKNRSSELLEEAV 336

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++    +L   P   L+D+ ++  EAL +W       +   EF+ + E+  +I + + 
Sbjct: 337 KAMQEDAFHLYIQPQFNLIDKNVISGEALSRWFLADGTAVPPDEFITLFEKHGIISSFDF 396

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++LE++ + + SW D+     + I IN +   + +    +    ++         I    
Sbjct: 397 YVLEKLCKVMRSWLDEGRSM-LPISINQSRLHIKEPSYLKKFCEIVDFYKIPHELIVYEL 455

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES         +  +  + K G  + +DDFGT  + +  L  +  D +K + S++ G  
Sbjct: 456 TESAFTDCVRELQDFMKEIHKAGFQIAIDDFGTGYAGIGMLSQVDADILKLDKSMLNGLG 515

Query: 893 EKRIAILRS--IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             R  +  S  II MA +I   +I + I       +L  + CD  Q   V+ P+      
Sbjct: 516 TDRRQMTISWKIIEMAHSIGMQVICEGIETREQYYDLKMLRCDIGQGFLVSRPIPAEQFA 575


>gi|315180660|gb|ADT87574.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 637

 Score =  320 bits (820), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 201/451 (44%), Gaps = 27/451 (5%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A+ D LT + NR   L ++  +        N    ++++DI  +K+IND++   
Sbjct: 191 KYQQFMAWHDPLTKLKNRNYLLKQIEVLSKR-----NHHYALILLDISHFKEINDIVSYE 245

Query: 587 VGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
            GD +L+ ++ RI +       + AR   + F I++    +      F  ++   +   +
Sbjct: 246 YGDKILMEISERIQDKCDKFSFLCARAGADEFAILIN--RSEFNFEFFVKSLLSDLTTVL 303

Query: 646 NLLEREITVTASIGFASWTSSKITSSE-------MLKNAELAMYHAKHRGGNHVESFRVS 698
           + L+    +T S G A        +         +L NA+LA++ AK      V  +   
Sbjct: 304 HRLDPSKRMTLSTGIALSHEMSEHTKRYLKKSSVILNNADLALHIAKRHPTESVVYYSKE 363

Query: 699 SFRSDR--VMIKEDLC---LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                R    + E+L          +LY+ + PII    E + G EALI+W+HP  G I+
Sbjct: 364 MEIEHRKKRKLSEELEVLLKTSHQKQLYMAFQPIILRQSERL-GCEALIRWNHPTHGFIN 422

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDII-SWRDQANMPPIFILINIASKDLLDNELCE 812
               + IAEE  + KA+  ++++++ + +   W    +   I + IN++   L D EL  
Sbjct: 423 PEYLIAIAEESGLAKALGRWIMQQVYQALSVDWLAFNSR--IEVAINLS-DSLFDEELPA 479

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  + +  +     I L  +E++ +   +RS  ++ +L  I I L+LDDFGT  S L  
Sbjct: 480 LVSDIFASNINYLDAIVLEITETMTLDEIDRSVSIIRQLEDINIRLSLDDFGTGWSSLYN 539

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++ F+ +K + S +      E++   + +I+ ++  +   ++A+ +  E  +  L  +
Sbjct: 540 LNHLRFNKLKIDKSFVRDLNSLERQKFFISAIVTLSHQLGIKVVAEGVEDETQLHRLQEL 599

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           G D  Q  + + P+      +   + F   +
Sbjct: 600 GVDEFQGYYFSKPVTKEEFARFSDQYFARAQ 630


>gi|160899830|ref|YP_001565412.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Delftia acidovorans SPH-1]
 gi|160365414|gb|ABX37027.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Delftia
           acidovorans SPH-1]
          Length = 594

 Score =  320 bits (820), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 204/474 (43%), Gaps = 12/474 (2%)

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            A      +  R R  S   G  L+ +         +  L+        + +TG+PNR  
Sbjct: 124 HAIGSLCIIDTRPRTFSEEQGQQLQAMAAIV-----QAQLQYHHRIGKTNEVTGLPNRTQ 178

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
               L ++  L+         + V++     ++++ LG++  + ++  + + + ++    
Sbjct: 179 LKLDLKSLCILAPGAARGLVLMEVLNHASLLEMSNALGLSYVEQLMRDIAKAVTDMTGTH 238

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
             +  +   RF  ++ +     +       + + +  PI   +    +    G   +  +
Sbjct: 239 ATVYHVGLARFAWVISAGRQEDE-EALVNQLLEYLQKPITSADLRFELQPRAGVVRFYLN 297

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYH 725
           +    ++++NA + +  A +   +             R   +  D   A+ N +L LVY 
Sbjct: 298 QHEVDDVIRNAMVCVQQAGYNARSFHRYEENEDSLQQRSYRLLRDFGHALGNGQLRLVYQ 357

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P          GLEALI+W HP+ G I  SEF+ + E   +I ++  F+++     + +W
Sbjct: 358 PKFDNHSFSCKGLEALIRWKHPQMGEIPPSEFIPLVEATPLIHSLTRFVIKTALAQVAAW 417

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           + +     + + INI+ ++L + +  + + A+ ++       I +  +ES V+   + + 
Sbjct: 418 KAE--KLDLQVSINISPRNLDEVDFPDYLNAMCNQHGVPLKNIVIECTESDVLT-GQGTV 474

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSII 903
             L  +RK+GI + LDDFG   S L+ L  +P + +K + S++        A+  L+SI+
Sbjct: 475 QALQDIRKLGIKVALDDFGAAYSNLASLKNLPAEILKIDRSMVCDIDTNDRALSVLKSIM 534

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            MA ++   ++A+ +        L  +G D IQ  + + P+  + I K ++ER 
Sbjct: 535 TMASDLGYRLVAEGVDSAEVFDLLVSLGFDEIQGYYFSRPIEASEIRKFVEERN 588


>gi|294010402|ref|YP_003543862.1| putative signal transduction protein [Sphingobium japonicum UT26S]
 gi|292673732|dbj|BAI95250.1| putative signal transduction protein [Sphingobium japonicum UT26S]
          Length = 629

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 195/456 (42%), Gaps = 15/456 (3%)

Query: 510 LRYIGIANDI----TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  I  A D+      + + +      A  D LTG+PNR +F       L+    D+   
Sbjct: 146 MGVISTALDLCGMALRRHERVVDRERRANVDVLTGLPNRAAF----NAALECMPCDEPGI 201

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             + +ID+D  K +ND  G   GD ++     RI   +       R+ G+ F +++ +  
Sbjct: 202 WALFMIDLDNLKIVNDTFGHLAGDRLIQVAAARIARAVAPDVTF-RIGGDEFAVLVQAPA 260

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               +   A  + + + +        +   A+IG A +  S+ T++ + + A+ A+YHAK
Sbjct: 261 LLSDLDAAARRIFRGLELAAPCEGHMVVPQATIGGAVFGPSESTAAAVSEAADFALYHAK 320

Query: 686 HRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
             G      +        + R     D+  A+ +  +   Y PI+ L   EIVGLEAL +
Sbjct: 321 ETGRGGFVRYWPGIGTRITHRRDAIRDVAAALGDGRIEAHYQPIVGLDTGEIVGLEALCR 380

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I++ EF     +  +   +   M   IA D++ WRDQ       + +N++S 
Sbjct: 381 MRGRDGTLIAAHEFHEATADAHIAAELTEHMAAMIAGDMVRWRDQGLRVG-HVGLNVSSA 439

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDD 862
           D     + + ++           ++ +  SE V +G  +      + RLR  G+ + LDD
Sbjct: 440 DFYTGSISKKLERAFGPVGVPLDQLVVEVSEDVYIGRRDGVVAREIERLRATGVRVALDD 499

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYG 920
           FGT  + L+++  +P D +K + S +        +  I+  +I +A+ +E  +IA+ I  
Sbjct: 500 FGTGHASLTHVLNVPVDIIKIDRSFVERLWPDDPSIVIVEGLIKIARRLEIMVIAEGIET 559

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           E+   +L  MGC   Q    A     ++   LL+  
Sbjct: 560 EVQASQLWSMGCMLGQGFAFARATDRDATAALLRRH 595


>gi|241113203|ref|YP_002973038.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861411|gb|ACS59077.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 665

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 184/426 (43%), Gaps = 14/426 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTGI NR++   RL      +  D+    +V +ID+D +K+ ND  G   GD
Sbjct: 241 LELSHTDYLTGIGNRRALDRRLDECWA-AWKDERRDFSVFLIDVDFFKRFNDRYGHQEGD 299

Query: 590 DVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             L  +   +  ++   D ++ R  G  F +++ +    + +        +  ++ I   
Sbjct: 300 RCLTVIANALKAVVGSSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHD 359

Query: 649 ERE---ITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ER     TVT SIG A            +++ A+LA+Y+AK  G N + SF     R D 
Sbjct: 360 ERPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFDPFLPRPDD 419

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A++   + LVY PI  + + +   +EAL++   P    IS   F+ +AE
Sbjct: 420 HAGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAISPKTFIPVAE 479

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  + +E   RDI             + +N++   L        +  ++ +  
Sbjct: 480 RSGAILELGRWAIETACRDI-----LMTDRMATVSVNVSPIQLRSPGFAASVADILDRCG 534

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SR+ L  +E + M         +  LR +G+ + LDDFG   + LS+L  I F TVK
Sbjct: 535 VCGSRLALEVTEGLDMDMQSEVLKCIADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVK 594

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +   S  + + +L+ +I + +N   TI+ + +        L  +  D +Q  H+ 
Sbjct: 595 VDRTFLHDCSNPRGLTMLQDMIALIRNRGNTILVEGVETAAQFSLLKDLRIDRVQGFHMG 654

Query: 942 SPLGFN 947
            P+   
Sbjct: 655 MPVSAE 660


>gi|170743280|ref|YP_001771935.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
 gi|168197554|gb|ACA19501.1| diguanylate cyclase/phosphodiesterase [Methylobacterium sp. 4-46]
          Length = 642

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/448 (23%), Positives = 192/448 (42%), Gaps = 14/448 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  E +L  +  D LTG+ NR++    L   L  +  +      V++IDID ++  ND  
Sbjct: 200 ERGEELLKLSTTDALTGLANRRAIDQEL-HSLWKAWREGGAAFGVVLIDIDYFRMFNDYY 258

Query: 584 GIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G   GD  LVS+ R +  + +     + R  G  F ++L  E      A      R+  A
Sbjct: 259 GHQRGDAGLVSMARAMAAVARRHGGRIGRFGGEDFILLLRCEEPEAVAAVAEEVRREVEA 318

Query: 643 MPINLL---EREITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I      +    VTASIG A            ++  AE A+  AK    N V+ F   
Sbjct: 319 LAIPHEARMDHLAAVTASIGAAFCRGIAADKPERIVTAAERALLLAKDSNRNCVKLFDGR 378

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            F        + E +  AVE   + LV+ PI  +    I+  EAL++   P    +S + 
Sbjct: 379 LFDRVSSQDSVAEAVRTAVERGRVSLVFQPIWDVSAGRILAAEALMRLTAPDGTALSPAT 438

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE    I  +  F      R + +           + +N+++  L   +  E + A
Sbjct: 439 FIPVAERTGAIVELGAFAFREACRQLAATEAIP-----MVSVNVSAVQLGRPDFVETVAA 493

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +T  +P+R+ +  +E + +    R    +G L ++G+ + LDDFGT  + LS +  I
Sbjct: 494 LLRETGVAPARLAVEITEGLEIDTDSRVAEAIGALSRLGVQIWLDDFGTGFAGLSCISRI 553

Query: 877 PFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            FDT+K +   +  S   +   +L+ I+ + +N    I+ + +     ++ L + G   +
Sbjct: 554 SFDTIKVDRLFVQASDTPRGAKMLKDIVTLVQNSGQRIVVEGVETADQVELLKQYGVALL 613

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKNT 963
           Q  +   P+   ++  L  +   L  + 
Sbjct: 614 QGYYFNRPMSAEALRMLAAKGGRLASSA 641


>gi|295836366|ref|ZP_06823299.1| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB74]
 gi|295825988|gb|EDY45607.2| LOW QUALITY PROTEIN: integral membrane phosphodiesterase
           [Streptomyces sp. SPB74]
          Length = 916

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 134/745 (17%), Positives = 279/745 (37%), Gaps = 55/745 (7%)

Query: 155 PGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN- 213
           PG    F +  + P +  + +           +       +IG + L   +         
Sbjct: 104 PGLADLFFLLFAPPAIVGLLVLAKRPVTRAGWACLALDSWLIGGSLLTLSWSLALAHTTQ 163

Query: 214 -RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMY 272
            R   +          L Y  +D   +S ++ L        R     A+ +  +  L   
Sbjct: 164 FRGESVPRAAL----SLAYPLLDIALVSMVLALHFKRSAAGRFAINTAVGAFALTVLCDA 219

Query: 273 LHWN---RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
           L  +   R   + G +  +G    ++L   + +      + A   +            + 
Sbjct: 220 LFTSPLLRDSYRSGQLLDAGWFAGSLLLAYAPWVRSTRRAPAEEPVKVPPATRARTSTFA 279

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            +  Y  A +     +   +              +      +    V++ +++   ++  
Sbjct: 280 ALTPYLAAAVCTLGLLYSAVNA-----------PSVDRVVLITACTVVLALVLRQGIM-- 326

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           ++     +Q +    E     V GS D++            +P  + + G  + SM G  
Sbjct: 327 LVDNIALTQELAHKEEHFRSLVQGSSDVIMIVAPSGVLRYVSPAASGVYGREAESMLG-- 384

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRG---RLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                 IH  D       +  F+    G     + E R ++    +  +   +  +    
Sbjct: 385 CELASLIHPEDLGQVVHEIRRFLAADPGCEPTTRIECRFKSGCGDWLNVESTVNRLHG-- 442

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 I  + D+TE+ +    +  NA  D LT +PNR  F  R+   L       +   
Sbjct: 443 ----GLILNSRDVTERVRLQAQLQHNAEHDPLTDLPNRALFTRRVRRALK-GRRTGDTGV 497

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            V+ ID+D +K +ND +G   GD++LV   RR+ E ++  D  ARL G+ F  +++ E  
Sbjct: 498 AVLFIDLDGFKGVNDSIGHQAGDELLVQAARRLHESVRSGDTAARLGGDEFAALIVGEGT 557

Query: 627 ------SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                   +I D A  +R ++++P  +   E+ + ASIG A +  + + + E+L+NA+LA
Sbjct: 558 RDVAEREQQIKDLAERLRVALSLPYMIEGHEVRIAASIGVA-FAENGLGAGELLRNADLA 616

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G + VE +             +   L  A++  E  L++ P++ L    +  +
Sbjct: 617 MYRAKGLGKDRVELYVPQLQTEAARRTALAGRLRTALDEGEFALLHQPVVCLHTGAVEVV 676

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
            A  +W   +    +  EF+    +     A+  ++L     +    R + +  P  + +
Sbjct: 677 TAEARWRSAQGILFTPEEFLRGPGDAERGGALGRWLLGEAIAEAAERRAEGHTTP--VSV 734

Query: 799 NIASKDLLDNEL--CEGMQALISKTLYSPSRIKLSFSESVVMGNP----ERSRLLLGRLR 852
            + ++ LLD        ++AL+++       +++    ++ + +P    +     L  LR
Sbjct: 735 RLGARALLDRATTPLTSVEALLTRYALPSGALQI----ALRLDDPRVPLDTLERRLNVLR 790

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIP 877
           ++G+ + LD FG   + +  L  +P
Sbjct: 791 RLGVRIGLDGFGAGHATIEALRRLP 815


>gi|126172667|ref|YP_001048816.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
 gi|125995872|gb|ABN59947.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS155]
          Length = 389

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 159/389 (40%), Gaps = 13/389 (3%)

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD +L  + + +   L   + LARL+G+ FG+++ + +           + 
Sbjct: 2   INDSCGHTAGDRMLAMVAKAMQACLGPQEQLARLAGDEFGLVICNRSALSVAQLLKQMIA 61

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +     +N       V  SIG A   +  I + E+LK+A++A   AK +G N +  +   
Sbjct: 62  QVSLQVLNDKNCNYKVGLSIGVAFGRAPYIDAQELLKDADIACIAAKAKGANQIHFYDDK 121

Query: 699 SFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNIS 753
                           +  A+E +EL L Y PI  L    +   +E L++   P    ++
Sbjct: 122 DKELTYQRNAPKWAVRIAQAIEENELILYYQPIRGLGSGPQRQRMEILLRIQEPCGRILA 181

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            ++F+  AE   ++  I+  ++ +    +         P   I  N++   L    + E 
Sbjct: 182 PAQFIAAAERFKLMPDIDKEVIRKAFLWLSLHP--VLWPDHCISFNLSGNSLGAEGMVEY 239

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +             I    +E+  + N  R   +L +LRK+G S  LDDFG+  +   YL
Sbjct: 240 IAQQQHIFDIPSQCICFEITETTAIQNRNRGMEMLKQLRKLGFSFALDDFGSGFASYGYL 299

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P D VK +G  +       K  AI++SI  + + +    +A+ +  +  I  L  +G
Sbjct: 300 RELPVDYVKIDGCFIKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQDIIDRLLSIG 359

Query: 932 CDYIQDSHVASPLGF----NSILKLLKER 956
            +Y Q   +  P             L +R
Sbjct: 360 INYAQGYAIGRPQPLANYREQYEMRLAQR 388


>gi|313904664|ref|ZP_07838038.1| diguanylate phosphodiesterase [Eubacterium cellulosolvens 6]
 gi|313470457|gb|EFR65785.1| diguanylate phosphodiesterase [Eubacterium cellulosolvens 6]
          Length = 582

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 180/442 (40%), Gaps = 15/442 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            +   L+ +  ++  + LT +PN   ++DR+          D         ++     +N
Sbjct: 127 ARANLLDRLQESSVTNYLTMLPNSGGYMDRVGEAFAEGKISDYNAY---YFNLKGTGLLN 183

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G +  D +L          ++  + +  L G+ F  ++  +  +   A  +     +
Sbjct: 184 VRYGPSECDWILRRYADHCRAFVEPDECIGHLGGDNFVAMIRKDREAEFEAFLSGTETYA 243

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM---YHAKHRGGNHVESFRV 697
           +     + E  + +T           +      +  A +A+   Y  KH       + ++
Sbjct: 244 V-----VGETRVPITIRSTCGMMRMDETLPGPWMVMAGIAVALNYARKHNLNLAELTPQM 298

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            +  + +  I++    A+ N +    Y   + + +  IVG E L +W       I  SE+
Sbjct: 299 MAQANRQKEIQQRFNYALRNRDFETYYQLKVDIRNNRIVGTEVLSRWRLGND-IIGPSEY 357

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E+  M++ ++L++LE   R++  W+       + + +N + +DL D  L + +  +
Sbjct: 358 IPVLEQAGMVEELDLYVLEEACRNLRKWKQMGRDI-VPMSVNFSRRDLCDPRLADKIIEV 416

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +     + I +  +E+            L  + +  I+ ++DDFGT  S LS L   P
Sbjct: 417 IRRYQVDRNDILIEITETTSEREKAMMLAFLREMDEYQIATSIDDFGTGYSSLSALRDYP 476

Query: 878 FDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K + S +   +  +K  AI+ SII MA  +   +I + +     ++ L  +GC+  
Sbjct: 477 VSEIKIDRSFINHPSLKDKDKAIIGSIIDMANRLHVDVITEGVENMEQVELLKDLGCNRA 536

Query: 936 QDSHVASPLGFNSILKLLKERF 957
           Q      PL      K+L++++
Sbjct: 537 QGFLYGRPLPKEKFEKMLEQKY 558


>gi|24374082|ref|NP_718125.1| response regulator [Shewanella oneidensis MR-1]
 gi|24348563|gb|AAN55569.1|AE015695_11 response regulator [Shewanella oneidensis MR-1]
          Length = 658

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/552 (18%), Positives = 216/552 (39%), Gaps = 42/552 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +L S D + +       V        +LG  S  + G   +   ++   DR   +    
Sbjct: 134 MLLASPDALIEISHPNHIVQANITARKLLG--SSMIEGRSLD--EFLVETDRQRLQEQAL 189

Query: 470 SFVGYRRGRL--QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +       RL    E  V       + +++ + P+  ++G++L                 
Sbjct: 190 AVGQSMSIRLINHTELEVSCRLAGPYGLVLCLNPV--TDGELLNTAV------------- 234

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                     L  + N Q  +  +   L     D N    ++VI I  ++  + ++G + 
Sbjct: 235 ---------ELPSLLNYQQLISVIEQYL-----DSNCSAVLVVIKIRSFELWSRMIGYSE 280

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
               +  +  ++   +     LA L+  +F + L    + +     A ++   +    NL
Sbjct: 281 AQRTIEDIALQLLNSMGARGELALLANEQFVLCLPDVASEIDALQKAASIIDPVTGKANL 340

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRV 705
           +  ++    S  +            +L N  L               +       +  ++
Sbjct: 341 MSSKLDYAVS--YCLIPEDGDEPRTVLNNLLLGNLMMAEDPVRMFMRYDQQAIERKKHQI 398

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            + + L  AV+  +L+L + P        + G EALI+W HP++G +S + F+ +AE+  
Sbjct: 399 SLNQALFHAVQQRQLFLNFQPKFDFAKYTLSGCEALIRWQHPEFGMVSPALFIPLAEQHG 458

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  I  ++L+        WR Q       + INI+ + L++ +    ++  I  T   P
Sbjct: 459 QMVDIGYWVLKTAFITAAKWRSQGIHFG-KMAINISGRQLMEPDFIHWIKHHIQLTGVEP 517

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + ++   +E+ ++ N +   + L    ++GIS+ +DDFGT  S LSYL  +P + +K + 
Sbjct: 518 TDLEFELTETFLLNNLDDCAITLKTFAELGISIAIDDFGTGYSSLSYLNKLPINVLKIDR 577

Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL+          +++ +++ +A ++   ++ + I     +  +  +GCD +Q   ++ P
Sbjct: 578 SLVLDIESNLNTESLVANVVRLAHDLNMKVVVEGIETLDQLNIVKVLGCDVVQGYCISKP 637

Query: 944 LGFNSILKLLKE 955
                 L LL  
Sbjct: 638 QSEEEYLALLTS 649


>gi|209546696|ref|YP_002278614.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537940|gb|ACI57874.1| diguanylate cyclase/phosphodiesterase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 648

 Score =  319 bits (819), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 102/426 (23%), Positives = 187/426 (43%), Gaps = 14/426 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTGI NR++   RL      +  D+     V++ID+D +K+ ND  G   GD
Sbjct: 224 LELSNTDYLTGISNRRALDRRLDECWA-AWKDERRDFVVLLIDVDFFKRFNDRYGHQEGD 282

Query: 590 DVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             L  + + +  +++    ++ R  G  F ++L  +   + ++       +   + I   
Sbjct: 283 RCLTVIAKVLKAVVESSGGMIGRYGGEEFIVVLPVQTPKIAMSLAEKIRMEVEFLAIEHD 342

Query: 649 ER---EITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            R      VT SIG A    +       +++ A+LA+YHAK  G N +  F     R D 
Sbjct: 343 GRPDDSPIVTVSIGVAFTRDNVGEKVERLVREADLALYHAKASGRNCIRRFDPLLPRPDD 402

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A++   + LVY PI  L +E+   +EAL++   P    +S   F+ +AE
Sbjct: 403 NAGKLVPLLTAAIDRKLVSLVYQPIFELTNEKARAVEALMRLRMPDGTAVSPKTFIPVAE 462

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  + +E   RDI             + +N++   L        +  ++ +  
Sbjct: 463 RTGAILELGKWAIETACRDI-----LMTDRMATVSVNVSPIQLRSQGFAANVADILIRCG 517

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            S SR+ L  +E + M         +  LR +G+ + LDDFG+  + LS+L  I F TVK
Sbjct: 518 VSGSRLALEVTEGLDMDMQSEVLKCIADLRALGVEIWLDDFGSGFAGLSWLRAIEFQTVK 577

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +   S  + + +L+ ++ + +N   TI+ + +     +  L  +  D +Q  H+ 
Sbjct: 578 VDRTFLHDCSNPRGLMMLQDMVALIRNRGNTILVEGVETAAQLSLLKDLRIDRVQGYHMG 637

Query: 942 SPLGFN 947
            P+   
Sbjct: 638 MPVSAE 643


>gi|218281293|ref|ZP_03487790.1| hypothetical protein EUBIFOR_00355 [Eubacterium biforme DSM 3989]
 gi|218217540|gb|EEC91078.1| hypothetical protein EUBIFOR_00355 [Eubacterium biforme DSM 3989]
          Length = 691

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 188/455 (41%), Gaps = 21/455 (4%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNA--FQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                  + + I    K  E  +  A   +D LTG+  RQ+F         L+    +  
Sbjct: 251 KPYNTRIVMSRIDSVIKLRESSMTLAAIEKDELTGLYTRQAFY---HHARTLTNFMTDEI 307

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++V+D+  +K IN   G   G++VL+ L            +L R  G++   +  S+ 
Sbjct: 308 FNIVVLDVADFKLINGTYGTKKGNEVLIYLANAFK-YYIKNGLLTRYEGDQLLALFHSKE 366

Query: 626 --NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  +I +    + +   +P         +   +G      + +    M   A +A+  
Sbjct: 367 KIDVDRIENNLNKIMEEAPIP--------NIRVKLGIYENVDTSLQIPIMCDRALMAVKS 418

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                  ++  F     +    +  ++ D   A++N E  + + P      E+IVG EAL
Sbjct: 419 ISKDFKQNIAFFTQEMNQKLLAQRQMENDFKDAIKNREFVVYFQPKYDASSEQIVGAEAL 478

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W       IS   F+ + E   ++  ++ ++ E + R     R +  +P + I +N++
Sbjct: 479 VRWQKEDGTLISPGLFIPLFESDGLVVQLDEYVFETVCRFQKD-RMKQGLPILPISVNLS 537

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              +  +++ +    +I +     S + +  +ES  +   ++   +  ++   G  L +D
Sbjct: 538 RASIHFSDVVQRYINIIKENEIPFSCVPIELTESAAL-YSQQILEITNQMVNAGFKLHMD 596

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DFG+  S L+ L  + F TVK + SL+      + + I+R  I +   ++  ++A+ +  
Sbjct: 597 DFGSGYSSLTTLNELKFTTVKLDKSLIDYIAKPRGMKIVRQTIDLGHGLDMKVVAEGVET 656

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +     L  M CD IQ  + + PL  +  ++ L+ 
Sbjct: 657 KEQRDCLIEMNCDEIQGFYYSKPLKQDDFIEKLRA 691


>gi|225571090|ref|ZP_03780107.1| hypothetical protein CLOHYLEM_07190 [Clostridium hylemonae DSM 15053]
 gi|225160171|gb|EEG72790.1| hypothetical protein CLOHYLEM_07190 [Clostridium hylemonae DSM 15053]
          Length = 1288

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 198/440 (45%), Gaps = 24/440 (5%)

Query: 514  GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            G   +  ++ +  +  L     D LT + NR S+ + L        T++     V+V +I
Sbjct: 864  GFIVNEIKRHRLFQAALHANHYDLLTDVLNRNSYENNL----PRYQTEEVSSLGVIVANI 919

Query: 574  DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            D  KKIN+  G   GD  +  L   +  +    D + R +G+ F II ++ +    + D 
Sbjct: 920  DNLKKINEDYGTVTGDQYIRHLANLMKMIFAQTD-IYRFNGDEFLIIAVN-SEKAVLEDK 977

Query: 634  AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
               +R+ I       E+    + S+GF+ W S +   + ++  A+  M   K R      
Sbjct: 978  VQKLREKI-------EKNENFSVSLGFS-WDSVEHDLAALIHAADDVMKLNKKR----HY 1025

Query: 694  SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 S  +    +  +L   ++  E  +   P   L + + +G EALI+  HP++G + 
Sbjct: 1026 DEMHGSDDAQHRQLLRNLIKQIQRGEYVVYLQPKYHLENHKWIGAEALIRQQHPEFGILP 1085

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             SEF+ + E   +I+ I+LF+LE + R +  W        + I +N +   L+++++   
Sbjct: 1086 PSEFIPVLESNGIIRYIDLFVLEEVCRLLEKWNRN----DLIISLNFSRVTLMEDDIINS 1141

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            M+ ++ K  +S   +++  +ES V          +  +  +G+ ++LDDFG + S LS L
Sbjct: 1142 MKKVLDKYDFSRRCLEIEMTESTVEHCSAMLYKTVQEISDLGLRISLDDFGIRYSNLSVL 1201

Query: 874  GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              I FDT+K + SL+      ++   ILR++I M + ++  +IA+ +        L  + 
Sbjct: 1202 NDIHFDTLKLDKSLIQTLVSHQRSRIILRNVIQMCRELDIEMIAEGVETSRQEDILKSLD 1261

Query: 932  CDYIQDSHVASPLGFNSILK 951
            C   Q    A P+      +
Sbjct: 1262 CPNGQGYLFARPVPVKDFEE 1281



 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 95/250 (38%), Gaps = 15/250 (6%)

Query: 454 PYIHINDRDNFRTI-----LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +H  DR  +  +     L         RL+YEFR     N+  WM I I        +
Sbjct: 322 KVVHPEDRGGYMELMDRDNLRQSYQNGLTRLKYEFRRIIEQNKMMWMEIEILLFKEPLQN 381

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            L  +    DI E+KKS   +   +  D LT + N++S   ++   L     +       
Sbjct: 382 ELMALMYLTDIDERKKSSFQLRYESEFDQLTDVYNKKSAESKIIQCL----REPAELRAF 437

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D +K IND  G   GDD L+     +  +     ++ R  G+ F +++    +  
Sbjct: 438 LILDLDNFKDINDSYGHKAGDDTLILFADHLKAVFHEHCVVGRFGGDEFLVLMEQITSDK 497

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++ D  + + + +       ++   +  S G             + + A+  +Y  K+  
Sbjct: 498 EVDDALMDLYQKLQ-----EDKRYDIKFSAGITLI-KGSSDYETVFEQADKTLYEVKNSQ 551

Query: 689 GNHVESFRVS 698
               + +   
Sbjct: 552 KGLYQYYNRE 561


>gi|255654797|ref|ZP_05400206.1| putative signaling protein [Clostridium difficile QCD-23m63]
 gi|296449541|ref|ZP_06891318.1| GGDEF domain/EAL domain protein [Clostridium difficile NAP08]
 gi|296878136|ref|ZP_06902151.1| GGDEF domain/EAL domain protein [Clostridium difficile NAP07]
 gi|296261605|gb|EFH08423.1| GGDEF domain/EAL domain protein [Clostridium difficile NAP08]
 gi|296430889|gb|EFH16721.1| GGDEF domain/EAL domain protein [Clostridium difficile NAP07]
          Length = 1009

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/498 (19%), Positives = 209/498 (41%), Gaps = 35/498 (7%)

Query: 460 DRDNFRTILDSFVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           ++  F   L     Y +   + E    ++  + D +  W+ + I    +     L+ +G+
Sbjct: 507 EKSKFLKKLRGLDKYLQESYETENTYIYKFESKDKKPKWVRLNI--FEDE----LKVLGV 560

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+T++      I      D LT + NR++F  ++         D+      ++ D+D 
Sbjct: 561 VVDVTKEFIEKRKIEYERDFDILTNLLNRRAFHSQIQE--KFKNKDELKVAAFIMWDLDN 618

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K IND  G   GD+ +      + + + +  I++RLSG+ F + +    +   I D   
Sbjct: 619 LKYINDTYGHDAGDEYIRCAADILKKFISWNGIVSRLSGDEFYVFIYGYESKDSIRDIIN 678

Query: 636 AMRKSIAMPIN--LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +++K +   +       E  + AS G + +    I   E+++ A+ AMY  K+     V 
Sbjct: 679 SVKKQMNNTLLKLHDGTEFKIRASAGISWYPDDSINYDELMRYADFAMYQIKNTIKGEVS 738

Query: 694 SFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F ++ +  D  ++    +L   ++   +   + PI+     ++   EAL++        
Sbjct: 739 EFDINIYNKDSFLLSNREELNKLIDGQLVEYAFQPIVDCK-GKVFAYEALMRPKIKT--F 795

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI-LI---NIASKDLLD 807
            S  + + +A     +  I      +  +    ++++     +F+  I   N++  D   
Sbjct: 796 SSPIDVIRLARSQSKLYQIERITWFKALKSFKKYKEKFGDCKLFLNSIPNNNLSKVDF-- 853

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
               E ++ L        +R+ L  +E+  + N +        +    I + LDDFGT  
Sbjct: 854 ----EEIEDL---YGEYLNRVVLEITENDKI-NEDFIEKKKAYIDHWNIEIALDDFGTGY 905

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           +  + L YI  D VK + S++ G    E R  IL+++I  +      +IA+ +  + +++
Sbjct: 906 NGDAVLLYIMPDYVKIDMSIVRGIDKDENRQKILKNLISYSNERNIKVIAEGVETKGEME 965

Query: 926 ELTRMGCDYIQDSHVASP 943
            L  +G DY+Q  +++ P
Sbjct: 966 TLINLGIDYMQGYYISKP 983


>gi|292490374|ref|YP_003525813.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291578969|gb|ADE13426.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 696

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 108/553 (19%), Positives = 225/553 (40%), Gaps = 19/553 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHI 458
           +     R    +  S D V  +      +        + G      + G     L  +  
Sbjct: 141 LGESERRARALLESSRDAV-GYVHEGMHLYANRAYLDLFGCHDLDDIEGMP--LLDMVAP 197

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            +   F+T L  +     G+ Q   + R  D       +   P ++  G+    I +  D
Sbjct: 198 EEHSRFKTFLKEYNAREGGKSQLPLKGRKLDGSTFSATLEFTP-ASIEGEPCTQI-VIRD 255

Query: 519 ITEQKKSLEGILCNAF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
                   E  +  A  +D LTG+ +R    + +   +  +A       +++ I +D++ 
Sbjct: 256 -EAYNPVAEEKIKQAQQRDVLTGLFSRPYCFELMEEAVS-AARAGEKESSLLYIALDQFN 313

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           ++   +GI   D V+  + R + +      +LAR  G+   I+L+++ +  ++   A  +
Sbjct: 314 RVRVRVGIGASDLVITDVARILQQYCDEKGLLARF-GDEIFILLVAQASDEQVDTLAEQL 372

Query: 638 RKSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           R+++    + + ER I VT S+G      +     ++L+ A  A   A+  GGN VE + 
Sbjct: 373 RQAVDQHLVEIGERSINVTCSVGLCRMGENTPGVQQVLERAHKACVKAQEAGGNRVERYS 432

Query: 697 VS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                 + +      +  L  A++     L+Y P++ L  +     EAL++      G I
Sbjct: 433 PVAADLTDQEKIKQWEIRLRQAIDKDGFRLLYQPVVSLHGKTEEIFEALLRMTDKAGGYI 492

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              EF+  A +L ++  I+ +++ + +R +          P    I ++   + D  L  
Sbjct: 493 PPEEFLEPAAQLKLMGEIDRWVIAKASRVLRDRHQAG--QPTRFFIKLSDFSIHDKNLLP 550

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  + +     + +    SES  +   ++ + L+G +R +G    L+ FGT   + + 
Sbjct: 551 WLEKHLRENQLDANSLIFEISESSALNYLKQMQRLIGGIRALGCCFALEHFGTGLDMSNC 610

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++  D +K NG+ +      E+   ++++II MAK      IA+ +     +  L + 
Sbjct: 611 LKHLDVDYLKINGAFIENLLQEEENQTVVKTIIEMAKEAGKPTIAEFVSDANTLALLWQF 670

Query: 931 GCDYIQDSHVASP 943
           G DY Q  ++  P
Sbjct: 671 GVDYAQGHYIQEP 683


>gi|239626734|ref|ZP_04669765.1| EAL/GGDEF/PAS/PAC-domain containing signaling protein [Clostridiales
            bacterium 1_7_47_FAA]
 gi|239516880|gb|EEQ56746.1| EAL/GGDEF/PAS/PAC-domain containing signaling protein [Clostridiales
            bacterium 1_7_47FAA]
          Length = 1278

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/504 (18%), Positives = 203/504 (40%), Gaps = 17/504 (3%)

Query: 460  DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            DR   +T+L + +    GR      +   + +  W       +S    ++ + +G     
Sbjct: 785  DRARAKTMLFAGIFID-GRYVGMMVLVNTEEEREWAQSERSAIS----ELAKVVGTNART 839

Query: 520  TEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
            + +  ++ +       +D LTG+ +   F D    I+D           ++  DI  +K 
Sbjct: 840  SLRLMEARQKAEYYKNRDILTGLMSYACFKDECQKIMDA----GAGGYVIIASDIKGFKF 895

Query: 579  INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            IN+ +G   GD++L      + +  +  +   R+S ++F    I   +  +  +    + 
Sbjct: 896  INEAVGYTQGDNILRMFADMLTQNGREENRYTRVSADQFLCFGICRMDRNQFVEMVQRLN 955

Query: 639  KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
                   N +   + +    G              +  A +A     +   + V  F   
Sbjct: 956  GDFCRIQNQMFTNVNLMVRSGIYFIERECREIDAAIDRANIARRSVDYIIQSAVVVFNDG 1015

Query: 699  SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             F S      I   +  A+++ E  +   P + L D  + G EAL++W       I+  E
Sbjct: 1016 PFDSSFRENEIINRMEYALKHHEFKVYLQPKLSLKDHSLAGAEALVRWQREDGTIIAPGE 1075

Query: 757  FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            F+ + E+   I  ++L +  ++ R +  W D+    P+ I +N++S D+  + +   +  
Sbjct: 1076 FLPLFEKNGFISQMDLSIFRQVCRKLREWLDKGVR-PVCISLNLSSVDIRMDSILSDIME 1134

Query: 817  LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
               +       ++   +E+  + + +R+  ++  LR  G + ++DDFG+  S+++ +  I
Sbjct: 1135 GTQEYGIDHGLLEFELTETAFLKDTDRTFHVMKELRDSGFTTSIDDFGSGYSIMNMMADI 1194

Query: 877  PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            P D +K +   +    +TE+    LR +I M   +    + + I  +  +  +T MGC  
Sbjct: 1195 PSDVIKLDCGFVQSCRNTERGREFLRQLIQMTNKMGFVSLCEGIETKEQLDMVTEMGCSI 1254

Query: 935  IQDSHVASPLGFNSILK--LLKER 956
             Q  + + P+  +   +  LLK  
Sbjct: 1255 GQGYYFSKPIPMDEFFEKFLLKSH 1278



 Score =  192 bits (487), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 2/255 (0%)

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I   D  +  +     +   R  L+ EFR+   D    W+  R R +    G I  Y  
Sbjct: 23  MILEKDYHHALSECRQQLREHREVLKTEFRIVRKDKSTCWVDCRGRIIKGDEGQIWFY-A 81

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D T+ K  +      + +D+LTG+ NR++  +R++  L+ +     +   +M++D+D
Sbjct: 82  MMLDDTDDKNRIRTYREKSRRDSLTGLLNREASRERISEFLEEAGKS-RMTAALMIVDLD 140

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K++ND  G   GD VL      I  + +  D++AR+ G+ F + L    +   +  +A
Sbjct: 141 NFKEVNDTKGHLFGDSVLTEAAGCINSVSRKSDVVARIGGDEFLVFLAGMGSREAVMAYA 200

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + ++      +  I +   IG + +  +     ++   A++A+Y  K  G      
Sbjct: 201 DRIMEGMSGISAAGDNPIELRCCIGVSMYPENGREFDQLFTKADIALYSGKQTGKGKCVF 260

Query: 695 FRVSSFRSDRVMIKE 709
           +  S    D    + 
Sbjct: 261 YEPSLPSVDAKKWEA 275



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 6/189 (3%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            +     + ND+TE + S E    +   D LT +    +F  ++   L      +     
Sbjct: 463 KLDHLQSVLNDVTELRSSKEEASED--HDALTNLLTVGAFERQMEEYLKTVPKPERT--A 518

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            +++D+D + KIN+  G   G+ VL+++   +    +  D++ R  G+ F ++L    + 
Sbjct: 519 ALLLDMDDFHKINEARGKLFGNVVLMNVASCLKRTCREGDLIGRFGGDEFLVLLKD-TDM 577

Query: 628 LKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            + +  A  + + I+  ++  E   +TV  SIG       +    +++  A+ AM+  K 
Sbjct: 578 EEASRTAALIVREISGILDSSEYGGMTVCCSIGGRMIAEDEKGFYDIMVKADQAMHQVKR 637

Query: 687 RGGNHVESF 695
            G   V  +
Sbjct: 638 DGKGGVRFY 646


>gi|288550033|ref|ZP_05969038.2| putative cyclic diguanylate phosphodiesterase domain protein
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316477|gb|EFC55415.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Enterobacter cancerogenus ATCC 35316]
          Length = 862

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 178/422 (42%), Gaps = 15/422 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+  R     +              R  + VI +D    I + LG   G++ + + 
Sbjct: 441 DATTGLLTRAGLTSK--------EETFAQRNLLAVISVDNMNAITNSLGYEYGNEFIRAF 492

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE---REI 652
             ++        ++ R + ++F  I    +    +  +   +        +  E   ++ 
Sbjct: 493 IDKMQTTFPQGTLICRDAVDKFIAIFPGMHQHADVEWYQQLITNLFTDKYHPKESLPKKF 552

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
             T   G      +K T +E + NA +A+ +A+     H   F  S        + + E+
Sbjct: 553 VFTGYAGAVLSRVTKSTLTEAIMNAGIALEYARKSTTCHAMLFTESMHAQEVYNLQLHEN 612

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   + N E +LV  PI+ L   +    E LI+W   + G +    F+ +AEE  +I  +
Sbjct: 613 LSRGIYNQEFHLVLQPIVDLSTGQCTEGECLIRWHSKEMGIVPPDRFIALAEETGLILPL 672

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++ER   ++     +       + INI+++ LL  +    +   I         I +
Sbjct: 673 GNWIIERACLELADLITRGASDDFKLHINISARQLLSADFAWFLLDAIKSNGLKNQNICI 732

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V++   ER+R  L  LR+ GI++ +DDFG+  S LSYL  +PFD VK + +   G
Sbjct: 733 EITETVLLQEIERTRKTLQYLRRHGITVAIDDFGSGFSSLSYLNILPFDAVKIDRTFTAG 792

Query: 891 --STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             + +K  +I+ SI+ +       +IA+ I  +    +L  +GC   Q  +   P  F+ 
Sbjct: 793 VLTDQKCESIISSIVTLTNGFSVPLIAEGIEDDATRLKLIGLGCMKAQGYYFKKPAPFSD 852

Query: 949 IL 950
            +
Sbjct: 853 FV 854


>gi|313682606|ref|YP_004060344.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155466|gb|ADR34144.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 639

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 182/432 (42%), Gaps = 35/432 (8%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITEQ         + + D LT +PNR    + L           N   TV +++ID +K+
Sbjct: 233 ITEQ---THKATHHLYYDTLTSLPNRIKLQEDL---------LKNPINTVAILNIDDFKE 280

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  GI  GD +L  +   + E+   P    R+ G+ F   L   +++++       + 
Sbjct: 281 INDFFGIDAGDWLLTQIAHWLSEMKLNP---YRIGGDEFAFRLKEGSSNVEFQHDIEILL 337

Query: 639 KSIAMP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR- 696
             ++     + +  + V A++G A        S + L +A++A+  A+            
Sbjct: 338 SLLSEKLFMIADETVHVRATVGIAI------DSDKPLIHADVALNKARSIKRPSCIYDPS 391

Query: 697 --VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +       + +   +  A+    +   Y PI+  +  +I   E L++  +     I  
Sbjct: 392 EGIEQQYQTNIAMSAQIRQALVEHRIVCQYQPIVSCITGKIEKYETLVRIQNEDGSLIPP 451

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ IA++  +   I   ++ +         +Q         IN++S D+LD +    +
Sbjct: 452 YDFLPIAQKTKLYHHITQEVVYQACHLFADRDEQF-------SINLSSSDMLDAKTLTTI 504

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++ +T  + +R+     ES  + N E     + +++ +G    +DDFGT  S    + 
Sbjct: 505 ENILRQTG-TANRVIFEILESEGIENFEEVASFIAKMKNLGAKFAVDDFGTGYSNFENIL 563

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K +G+L+    E      ++ +II  A  I    +A+ +  E  ++++T +G 
Sbjct: 564 KLNVDILKIDGTLIKSINENPRTRIVVEAIIDFAHRIGIDTVAEFVASEEILQKVTELGI 623

Query: 933 DYIQDSHVASPL 944
           +Y Q  H   PL
Sbjct: 624 NYAQGFHTGKPL 635


>gi|114561616|ref|YP_749129.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           frigidimarina NCIMB 400]
 gi|114332909|gb|ABI70291.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           frigidimarina NCIMB 400]
          Length = 874

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 95/430 (22%), Positives = 205/430 (47%), Gaps = 5/430 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I +++K    +L +A  D LTG+PNR   ++RL+  L         +  ++ ID+D++
Sbjct: 433 QEINQRRKIENQLLHDAQHDGLTGLPNRSYLMERLSQALKHLRRHGLDQFALLFIDLDRF 492

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND  G   GD  L+   +RI   ++  D LAR+ G+ F I+L S N +    + +  
Sbjct: 493 KVINDSFGHLEGDRFLIETAQRIKSCVRENDTLARMGGDEFVILLDSINATEDAIEVSDR 552

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESF 695
           + ++++MP  L ++E    ASIG A    +K +TS  +L++A+ AMY AK  G      F
Sbjct: 553 ILQALSMPYQLAKQEFISGASIGIAFSGRNKLVTSESLLRDADAAMYQAKANGKGCYVIF 612

Query: 696 RVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   ++   ++ D   A++  E  + Y  ++     EI+ +E  I+W HP+ G I 
Sbjct: 613 DDKLSAQSKLQHELEIDFKKALDQQEFKINYVEVVDFTTGEIIAIEPHIEWHHPEQGLIE 672

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             +   +A +  +   I+ ++      +   +    + P +++ ++I+S+ + +  +   
Sbjct: 673 HGKMKQLAAQYQLTLNIDGYIFSN-LNEQYQFLKSKHGPSVYLHLSISSQHIKNKFVLRN 731

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  I  +  +  ++ L F+E  ++ + E        + ++G+ + +D +GT  S LS L
Sbjct: 732 LKQTIKSSHINLEKLILFFNEKALVQDTENHINGFELISQLGVQIGIDGYGTGYSSLSCL 791

Query: 874 GYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            ++P   +K +  +       +   ++++    A+ +   + A  +  +  +++   +G 
Sbjct: 792 SFLPIKALKLDDDISKHLLNDKQLQLVKAYQLTAQTLNFDMYATTVDTQQQVRQFLELGY 851

Query: 933 DYIQDSHVAS 942
              Q   ++ 
Sbjct: 852 VRGQGRAISK 861


>gi|114797929|ref|YP_761274.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
 gi|114738103|gb|ABI76228.1| putative diguanylate cyclase [Hyphomonas neptunium ATCC 15444]
          Length = 748

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/447 (21%), Positives = 200/447 (44%), Gaps = 20/447 (4%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D+  ++ +   I+  + +D  TG+PNR++  D +           ++   + VI + 
Sbjct: 314 MLEDLEAREAA---IVTLSREDMETGLPNRRAMNDDIDA------RGGDVAVRIAVIRVL 364

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           +++K+   +G A     +  L  RI E      +  R++G   G+I     +     +  
Sbjct: 365 RFRKVRASIGHAATAQAMKILAGRIQEFT--GALPYRINGADLGLIFEP-GSRFATPEAL 421

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  + + P+ + +  + +    G A   ++++    ++  A +A   A+         
Sbjct: 422 THIVGACSQPVMIEDASVDLMLCSGLAIPDAAEVRPLGLIDQAVIAADMAEANQAPSAAF 481

Query: 695 FRVSS-FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   +  + +  ++  A  +  L L Y P   L    + GLEALI+WDHP+ G I 
Sbjct: 482 DLARYGNPASTLSLMSEMLKATRDGGLSLHYQPKFSLKTNTVCGLEALIRWDHPQQGRIY 541

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +AEE   I+ +  +++ +   D  + R       + I +NI+ + L ++     
Sbjct: 542 PDTFIPLAEETGHIRQLTEWVVIQAIEDQRALRQNGYE--LPISVNISGRQLNEDSFALW 599

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
               I  +    +++    +E+ V+ +P+++  L+   R  GIS+++DD+G   S LSYL
Sbjct: 600 AIGKIRSSG---AKLCFEITETAVISDPDKALRLINLFRAAGISISIDDYGAGLSSLSYL 656

Query: 874 GYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             IP   +K + S +      +    +++S I +A  +  +++A+ +  E  ++ L  MG
Sbjct: 657 KQIPAHELKIDKSFILTVEDGKSDQLMIQSTIDLAHAMGMSVVAEGVENERVVELLRAMG 716

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFP 958
            D +Q  H++ PL   + L  L+ + P
Sbjct: 717 ADTVQGYHISRPLTLETTLSFLRAQNP 743


>gi|269140721|ref|YP_003297422.1| diguanylate cyclase/phosphodiesterase [Edwardsiella tarda EIB202]
 gi|267986382|gb|ACY86211.1| diguanylate cyclase/phosphodiesterase [Edwardsiella tarda EIB202]
 gi|304560502|gb|ADM43166.1| hypothetical protein ETAF_3063 [Edwardsiella tarda FL6-60]
          Length = 668

 Score =  319 bits (818), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 186/446 (41%), Gaps = 18/446 (4%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +    +K+ + +   + +   T +P +  F+  L                VM++ I   
Sbjct: 218 RNQQALEKTRQTMSQLSTRYPQTNLPGQALFVSLLEQQCQAEREGQ----CVMMVSIPTL 273

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           ++   VL     D +L++L  R+ E      +LA+ S + F I+             A  
Sbjct: 274 QEAMGVLDGGQRDMLLMTLVERLHEGTSPASLLAQASQDGFLILARDAARPSDAMQQAQR 333

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSE---------MLKNAELAMYHAKHR 687
           +   +  P+ L    +  TA+IG A    S  TS           +L  A  A+  A   
Sbjct: 334 LMSLLTQPVTLDNLALRPTAAIGIAMRRPSLETSEAECELSPTERLLTQARSALNMALTD 393

Query: 688 GGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
           G N V  F        +  +  + ++  A+   +  L   P I L  + + G EALI+W 
Sbjct: 394 GKNRVLFFEPQLAERVKARLTQENEILNALRQGDFELYLQPQIDLRSQRLAGAEALIRWH 453

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
               G    S+F+ +AEE   I A+  ++L+   R ++ W+ +     I + +N+++  L
Sbjct: 454 RQDGGCSEPSQFIPLAEEQGGIVALGEWVLKEAVRILVDWQRRGLT--IPLSLNVSALQL 511

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           +D    + ++ L+ +   S  R+ L  +E+  + +  R+   L RLR  G+ + LDDFG 
Sbjct: 512 VDARFGQRLETLLQQHAISAQRLHLEITETAYISDIRRAADTLDRLRNQGVRVALDDFGM 571

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + L+YL ++P D +K + S +        A++R +  +A+ +   ++A+ +  +    
Sbjct: 572 GYAGLNYLRHLPVDILKIDKSFIDQI-PLDGALVRIVGSIAEVLSLDVVAEGVETQGQCD 630

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L   G  Y Q    +  L     L 
Sbjct: 631 WLLANGIHYAQGYFFSPALSQRDFLA 656


>gi|78777838|ref|YP_394153.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498378|gb|ABB44918.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 640

 Score =  319 bits (818), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/417 (22%), Positives = 168/417 (40%), Gaps = 21/417 (5%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LTG  NR    D +  +L+L         +V ++D+DK+K IND  G   GD VL 
Sbjct: 223 FTDPLTGTFNRNYL-DEIEHVLNLEK------YSVAMLDLDKFKIINDTYGHKTGDYVLS 275

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR-KSIAMPINLLEREI 652
            ++      ++  DIL R  G  F +++   + +    +    +R        +    +I
Sbjct: 276 HVSTLFKNSIRESDILVRYGGEEFLLLINKRDKTEPKTNICERIRSNVAKENFSYDGHDI 335

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-- 710
            VT SIG     + +    E +K A+  +Y AK  G N +  +                 
Sbjct: 336 KVTVSIGVHKHPALEKNLQEAIKIADKMLYEAKSSGRNKIVIYDEKLNSLSLSSSSSKHL 395

Query: 711 --LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+E   +   Y PI      EI   EAL++        I    FM   +   M  
Sbjct: 396 SFVKEALEEDRVTCYYQPIYNHHTGEIFKYEALVRIIAKDGKVIPPMSFMPHIKLTNMHY 455

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L  +       +         + INI   DL++ ++ E +   +    +  SR+
Sbjct: 456 KLTQRVLSTVFEKFKDNKSL-------VSININFSDLINPDIEESIVKALKSNHHLASRV 508

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + N E  +  +  L  +   +++DDFG+  S    +  I  + +K +GSL+
Sbjct: 509 TFEILESDEIENIELFKQKIHLLHSLKAKVSIDDFGSGYSNFKSVIDIEANFLKIDGSLI 568

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                  K   +++SI+  A       IA+ ++ +   ++L  +  DY+Q  +++ P
Sbjct: 569 KNIDVNGKDFKVVKSIVHFAAQSNMQTIAEFVHSKEVYEKLLLLDIDYMQGYYISKP 625


>gi|227873558|ref|ZP_03991801.1| possible signaling protein [Oribacterium sinus F0268]
 gi|227840604|gb|EEJ50991.1| possible signaling protein [Oribacterium sinus F0268]
          Length = 731

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 188/410 (45%), Gaps = 14/410 (3%)

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
               DL+     +    +  +I  +K  N+  G   GD +++++ + + +      ++ R
Sbjct: 47  QAFRDLAKRYMEVGQCAIYFNIIDFKLYNERFGFEAGDALILAMAKILKKYF-PYALITR 105

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           +  +++ ++  S  +   I+    A++K + +P+ L  +            +   + + S
Sbjct: 106 MYADQYVLLTPSSGHYEAISKVRAAIQK-LDLPMALDFK--------AGICFVREQKSIS 156

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIR 729
            +   A++A    K         +     +       I + +  A+    + + Y P++R
Sbjct: 157 ALCDKAKIACDSIKKEREIFSRYYDEELGQLLTKQRYIVDHIEEAMAEGYIKVYYQPLVR 216

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
            + +EI G EAL++W  P +G +S +EF+ + EE  +I  ++L++LE+I +D    +++ 
Sbjct: 217 ALTKEICGFEALVRWADPHYGFLSPAEFIPVLEEYHLIHRLDLYVLEKICQDYQKTKEEG 276

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + +N++  D    ++   ++  ++K       + L  +ESV+  +       + 
Sbjct: 277 GSL-VPVSLNLSRMDFELCDVFRELEERMTKYQVPREMLTLEITESVLNKSQLLISSQIK 335

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNI 909
           R  + G  + +DDFG+  S L+ L    FD +K +  L+    EK   I+ SI+ MAK I
Sbjct: 336 RFHEAGYKVWMDDFGSGYSSLNILKDFDFDLLKIDMLLLREFNEKSKKIVSSIVDMAKKI 395

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG-FNSILKLLKERFP 958
               +A+ +  E  ++ L  +GC+ +Q  ++  P     SI++  ++ FP
Sbjct: 396 GIRTLAEGVETEEQLEFLREIGCEKLQGYYIGKPAPYLESIMQCREKGFP 445


>gi|156345402|ref|XP_001621353.1| hypothetical protein NEMVEDRAFT_v1g222072 [Nematostella vectensis]
 gi|156207184|gb|EDO29253.1| predicted protein [Nematostella vectensis]
          Length = 291

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 134/279 (48%), Gaps = 3/279 (1%)

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           + +  ++ R         V S    R  +++DL  A+  ++L+LVY P +   D  +VG+
Sbjct: 1   MTLAKSRSRNRYQFYIASVDSEMRRRRELEKDLRDALSLNQLHLVYQPQVDYRDHSVVGV 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G +    F+ +AE+   I  I  ++L++  R +  W DQ     + + +
Sbjct: 61  EALLRWQHPQHGFVPPDLFIPLAEQNGTIIPIGEWILDQTCRQLREWHDQGFTE-LRMAV 119

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++  L   EL   +  L+         ++L  +E+ +M +   +   L  LR+ G  +
Sbjct: 120 NLSTVQLHHAELPRVVNNLMQVYRLPLRSLELEVTETGLMEDINTAAQHLLSLRRSGALI 179

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL  +P D +K + S +      E    I+R+II + K++   +IA+
Sbjct: 180 AIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLLEDEDDATIVRAIIQLGKSLGMQVIAE 239

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +        +   GC+  Q    + PL    +   LK+
Sbjct: 240 GVETVEQEAYIMAQGCNEGQGYLYSKPLPARELTAYLKQ 278


>gi|210611079|ref|ZP_03288721.1| hypothetical protein CLONEX_00911 [Clostridium nexile DSM 1787]
 gi|210152175|gb|EEA83182.1| hypothetical protein CLONEX_00911 [Clostridium nexile DSM 1787]
          Length = 519

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/528 (19%), Positives = 214/528 (40%), Gaps = 23/528 (4%)

Query: 426 DRVTTTPD-IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
           + V   P  +          +  P+  W   +H +D + F           +     EFR
Sbjct: 3   NGVYRYPSGMVKEFQFPREVIKNPLPYWKEVVHPDDWETFYLSNMEIGKEGKDNHLVEFR 62

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
           +RA D ++HW+  R   M +       + G+ +      K           D LT +   
Sbjct: 63  IRARDGEYHWVKCRGYLMRDEKDQPAVFAGVLS------KLDRKPRI----DALTSLYTS 112

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           + F +    +L+ +A  +     + V+ ID+++ IN+  G   GD VL ++ + I EL+ 
Sbjct: 113 EVFSEDFAKMLEENAFGE---IGMFVVGIDRFRNINEGYGRQTGDKVLKTVAKLILELVP 169

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
               + RL G+ FG IL+   N   +     A+R          +R + +T S G+A + 
Sbjct: 170 EGIRVYRLEGDHFG-ILVKYPNEEIVKKLYDAIRSRCQCYRGNGKRRLLMTVSAGYAEYP 228

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENS--EL 720
               +  ++ +  + A+ +AK  G + +E F           +     L   + ++    
Sbjct: 229 KDAGSFVDLYEYTDYALQYAKENGRDCLELFSQEMLAYRSRELDIIRLLKEDISDNFRAF 288

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L Y PI+    +E++ +EAL+QWD+P   N+   E     E+  ++  +  +M +    
Sbjct: 289 SLKYQPIVEGETKEVIAVEALLQWDNPHIANLEYDELSKFLEKNRLLNPVGRWMFQTGCM 348

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +  W  +     + + +N++   L D    + +  ++  +   P +I +   +S  + +
Sbjct: 349 ALKKWLSEGWN--LSLNLNVSYAQLSDWNYIQEIIMIVKSSQVLPEKIVIEVVDSYFISD 406

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            +        +++ G+ + LDDFG   + +  L     D VK + +++     +   +  
Sbjct: 407 MKIYEQAFRAIKESGMKIMLDDFGADYASIGLLKNDLVDIVKVDRTIVRRVVKSSFDLDF 466

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +R I+ +  ++E  +  + +    ++K +  M  DY+Q          
Sbjct: 467 IRFIVKICHDMEIEVCLEGVAEMEELKLVEDMIFDYMQGDLFGKATDA 514


>gi|309775828|ref|ZP_07670822.1| putative sensory box/GGDEF/EAL domain protein [Erysipelotrichaceae
            bacterium 3_1_53]
 gi|308916366|gb|EFP62112.1| putative sensory box/GGDEF/EAL domain protein [Erysipelotrichaceae
            bacterium 3_1_53]
          Length = 1144

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/440 (21%), Positives = 187/440 (42%), Gaps = 24/440 (5%)

Query: 521  EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++ + L+  L     D LT + NR S+ + L+     +         V+V +ID  KKIN
Sbjct: 727  KRHRLLQATLHANHYDLLTDVLNRNSYENNLSRYQSDAVRS----LGVIVANIDNLKKIN 782

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            +  G   GD  +  L   +  +    D + R +G+ F II I+      +      +++ 
Sbjct: 783  EDYGTVTGDQYIRHLANLMKMIFTQSD-IYRFNGDEFLIIAINC-EKAVLEHKVQMLKEK 840

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            I          +++  S             + ++  A+  M   K R           S 
Sbjct: 841  IEKN---ENFSVSLGFSWDSVEC-----DVTALIHTADTVMKLNKKR----HYDELHGSD 888

Query: 701  RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                  +  +L   ++  E  +   P   L     +G EALI+  HP++G +  SEF+ +
Sbjct: 889  DMQHRQLLRNLTKRIQKGEYVVYLQPKYHLKSHMGIGAEALIRQKHPEFGILPPSEFIPV 948

Query: 761  AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             E   +I+ I+LF+ E + + +  W+       + + +N +   L+++++   M+ ++  
Sbjct: 949  LESNGVIRYIDLFVFEEVCKLLQKWQR----DDMVVSLNFSRITLMEDDIINSMKKILDM 1004

Query: 821  TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +    +++  +ES +          +  +R++G+ ++LDDFG + S LS L  I FDT
Sbjct: 1005 YDFPRQCLEIEMTESTMENCSAMVYKTVQEIRQLGLRISLDDFGIRYSNLSVLNDIHFDT 1064

Query: 881  VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            +K + SL+      ++   ILR+II M ++++  +IA+ +        L  + C   Q  
Sbjct: 1065 LKLDKSLIKTLVNEQRSRIILRNIIQMCRDLDIEMIAEGVETSRQEDILKTLDCPNGQGY 1124

Query: 939  HVASPLGFNSILKLLKERFP 958
              A P+  ++         P
Sbjct: 1125 LFARPIPVDTFEDHYILHRP 1144



 Score =  142 bits (359), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 14/258 (5%)

Query: 454 PYIHINDRDNFRTILD-----SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             +H  DR ++  ++D             RL+YEFR     N+  WM I I        +
Sbjct: 178 KVVHPEDRRSYMELMDRSNLTQSYENGITRLKYEFRRIIEQNKMMWMEIEILLFKEPLQN 237

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            L  +    DI E+KKS   +   +  D LT + N++S   ++   L     D       
Sbjct: 238 ELMALMYLTDIDERKKSSFQLRYESEFDQLTDVYNKKSAETKIMQCLRKQTED---LRAF 294

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++D+D +K+IND  G   GD++L+    ++  +     I+ R  G+ F + +    +  
Sbjct: 295 LILDLDNFKEINDSFGHKAGDEILILFASQLKAVFHEHCIVGRFGGDEFIVFMKQIASDQ 354

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +I +  + + + +       E+   +  S G             +   A+  +Y  K+  
Sbjct: 355 EIDEALLKLYQKLQ-----EEKLYDIKFSAGITLV-KGSSDYETVFAQADKTLYQVKNSQ 408

Query: 689 GNHVESFRVSSFRSDRVM 706
               + +  +      + 
Sbjct: 409 KGVYQYYNRALNSIPDIR 426


>gi|312960966|ref|ZP_07775471.1| two-component response regulator [Pseudomonas fluorescens WH6]
 gi|311284624|gb|EFQ63200.1| two-component response regulator [Pseudomonas fluorescens WH6]
          Length = 413

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 140/273 (51%), Gaps = 3/273 (1%)

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
                  ++ R++     R  ++  L  AVE  E  L Y P + +    I  LEAL++WD
Sbjct: 142 QLQRQRDDTTRMNVHDLARQDLETALRAAVERDEFTLHYQPKVEVASGRICALEALLRWD 201

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            P +G +S + F+ + E L +I  +  +++E + R I  W+       + + +N++   L
Sbjct: 202 RPGYGAVSPAVFVPVLESLGLIVPVGRWVIEAVCRQIARWQQCDIGV-VEVAVNVSGHQL 260

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           ++ +L   +  ++ +T      +++  +E  +M N + +   L RLR  G+ + +DDFGT
Sbjct: 261 IEGDLIADIGLILDQTGVQAHCLEVELTEGSLMENTQHTIASLQRLRARGVKVAIDDFGT 320

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L+YL   P DT+K + + +    +  +  AI R+II +A +++  ++A+ +  +  
Sbjct: 321 GYSSLAYLRRFPIDTLKIDIAFIREVTTNPQDAAITRTIIELAHSLKLRVVAEGVETQDQ 380

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  L   GCD IQ    + PL  +++ +LL+++
Sbjct: 381 MAFLKEAGCDQIQGYLFSRPLPVDNLERLLRQQ 413


>gi|218528273|ref|YP_002419089.1| diguanylate phosphodiesterase [Methylobacterium chloromethanicum
           CM4]
 gi|218520576|gb|ACK81161.1| diguanylate phosphodiesterase with GAF sensor(s) [Methylobacterium
           chloromethanicum CM4]
          Length = 598

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 202/434 (46%), Gaps = 17/434 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN---DVLGIAVGDDVL 592
           D L+G+P+R  FLD L    DL+A   N     ++ID+ + ++++    V+G    DD++
Sbjct: 167 DPLSGLPSRNQFLDDLA---DLAAEHPNEARIAVLIDLGRPEQVSAYSRVMGPGRVDDLV 223

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLERE 651
               R +  L+     L   +  +F  +          +   A   R++    I      
Sbjct: 224 REAARELRRLIGPGRKLYHTAATQFTFLAPRGAQQDDYVRLLADEHRQARQRSIT----G 279

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKED 710
           + +T++IG + +        + L++   A+  A+           V+     R   + +D
Sbjct: 280 MLLTSAIGVSVFKPCTTAPQDALRSLYSAVQDARSLHDLISVYSSVADEAYQRRYQLLQD 339

Query: 711 LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
              A   + +L LV+ P I L     +G EAL++WDHPK G +S  EF+ + E     +A
Sbjct: 340 FGPALGADDQLRLVFQPRIDLSTGRCIGAEALLRWDHPKLGPVSPGEFVPVIELSPHAQA 399

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  F+LER       W+D  +   + + +NI++ +L+++   + ++A + +   +P +++
Sbjct: 400 MTAFVLERALAQARCWQDAGHG--LVMSVNISAANLIESGFGQSVEAGLRRHGLAPGQLE 457

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES +M N E++R  L  L   GI L +DDFGT  S L+YL  IP   VK + S + 
Sbjct: 458 LEVTESAIMQNAEQARRQLDLLAAAGIRLAIDDFGTGYSSLAYLQDIPAHVVKIDQSFVR 517

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E+  +++ S+I ++ ++   ++A+ I       ++  M CD  Q    A PL   
Sbjct: 518 KLADGERERSLVHSMIHLSHDLGYRVVAEGIETAEAADQVRAMACDEAQGYLFARPLEIA 577

Query: 948 SILKLLKERFPLVK 961
           +    L+E     +
Sbjct: 578 TFETWLREHEQDAR 591


>gi|326317901|ref|YP_004235573.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374737|gb|ADX47006.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 592

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 96/492 (19%), Positives = 201/492 (40%), Gaps = 34/492 (6%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF-----------Q--- 535
            + +       P+   +G +L  + +  D   +  S +     A                
Sbjct: 108 GEPYIRFYAGAPLRLDSGHVLGSLCVL-DHRPRTFSPQQCDQLATLARMTMAHIELHQRA 166

Query: 536 ---DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI-DKYKKINDV--LGIAVGD 589
              + +T +PNR    + L                +M+++I D  + + +   +G    +
Sbjct: 167 GRVNAVTRLPNRTQLFEDLR------GRPAGTPSALMMVEIMDHERMLAESRAVGSEPLE 220

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            + ++   R+ +L+     +  +   RF +      ++ +   FA+    ++  P+    
Sbjct: 221 SLTIAFAARLRQLVGRSVTIYHVGEMRFCLEPDGNTHAQR-EAFAVQAVATLGGPMAFDG 279

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIK 708
           R I +    G   + +  I  S+ L+ A  A++     G               R   + 
Sbjct: 280 RAIELAPMAGLVEFDAGAIRPSDALRMASAALHSGLGSGAAFAWHDAALDASHRRAYRLM 339

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            ++  A+   EL LVY P + L      G+E+L +W HP+ G++S  EF+ + E   +I 
Sbjct: 340 REISPALARGELRLVYQPKLNLRAGAFTGVESLARWRHPELGDVSPGEFIPLVESGALIH 399

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
               ++L      +  W  Q     + + +N++S++L +      ++A  +     P  +
Sbjct: 400 EFTRWVLRTALEQLARWHAQGIE--LTMAVNVSSRNLEEASFVRDVRATCAVAGVDPRYL 457

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E+ VM    R++  L  +R +G  ++LDDFG   S L+ L  +P + +K + SL+
Sbjct: 458 HVECTENAVMT-SARTQAALEEIRAMGAQISLDDFGMGYSNLACLRRLPVELLKLDQSLV 516

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   A  +++S+I M  ++   I+A+ +      K L   GCD +Q  +++ PL  
Sbjct: 517 QPIDSDSRAWLLVQSLISMGHSLGYRILAEGVETREAFKMLAGAGCDAVQGYYLSRPLEA 576

Query: 947 NSILKLLKERFP 958
           ++I   L+   P
Sbjct: 577 DAIPGFLRLPLP 588


>gi|313123201|ref|YP_004033460.1| signal transduction diguanylate cyclase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279764|gb|ADQ60483.1| Signal transduction diguanylate cyclase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 711

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/424 (21%), Positives = 186/424 (43%), Gaps = 14/424 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D++T + +  +F   +   L     +  L+  ++  DI  +K  N   G+  GD++L  L
Sbjct: 166 DSVTNLCSVTAFRHHVAYELAEIKANPGLKLDLVHFDISNFKFFNKEHGLKAGDELLKRL 225

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + I + +  P ++ R   + F  ++ +      I +   A+         + +     +
Sbjct: 226 AQVISQEVGSPWLV-RSVADHFYALIPNSKVDQAIRNVHDAI---------IGDEAFGAS 275

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
              G    ++S    S  +  A +A  +A     N+   +         +   +   +  
Sbjct: 276 IRAGIYPLSASDQQVSFAMDRARIAANNAVGNYRNYYCRYEEKMEADLTLANYLLSHIDE 335

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           AV+   + + Y PI+     +I   EAL +W  PK+G ++  EF+ + E   +I  ++L 
Sbjct: 336 AVDKGWIKVYYQPIVDTFSSKISTYEALARWIDPKYGFLNPGEFIEVLERGHLIHKLDLH 395

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+ + +D+     +    P+ + +N++  DL   +L E +  +++      S+I++  +
Sbjct: 396 ILDLVCQDLEEAMQKGETYPM-VSVNLSRYDLELPDLHERINNILASHGVKSSQIRIEIT 454

Query: 834 ESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           ES ++ N E      + R  + G  + LDDFG+  S L+ L    FD +K + + +  + 
Sbjct: 455 ESALLSNTEAVIKEHISRFHEDGYQVWLDDFGSGFSSLNNLQNFDFDLLKIDMAFLRHAN 514

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           EK   IL  +I MAK +    +++ +  + +   L  +GC   Q  + + PL  + I   
Sbjct: 515 EKTPTILMDVIDMAKRLGIETLSEGVETKDEYDFLHSIGCVLAQGFYFSQPLPKDKITAK 574

Query: 953 LKER 956
            KER
Sbjct: 575 RKER 578


>gi|126725726|ref|ZP_01741568.1| sensory box/GGDEF domain/EAL domain protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126704930|gb|EBA04021.1| sensory box/GGDEF domain/EAL domain protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 837

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/631 (19%), Positives = 231/631 (36%), Gaps = 52/631 (8%)

Query: 341 IPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI 400
           +  W        G  + +T       +  A     V  V  +     Q  LA    ++  
Sbjct: 222 VNTW--TLRTKSGAKLQVTIMGAGVTVPTAQETMSVSSVSDVTDLAKQKTLAETLLNRNA 279

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
                  ++ +  S D            T +    T LG       G   +   ++   D
Sbjct: 280 -------AMIISQSDDW--------KIQTCSDAWVTQLGYTREETVGH--DLTEFMEPED 322

Query: 461 R---DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                 FR  L S    +   +    R R+   +   + ++   ++   G+ +  +    
Sbjct: 323 AIISKEFRETLKSEKASKNV-VHNTLRFRSKVGELRQIKLQ-SVVAALEGNFVNIV-TLV 379

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D+T+   +   +     QD LTG+ +R+ F DR       S         V + D+D +K
Sbjct: 380 DVTDIMHTQNQLQMLVNQDELTGLYSRRGFKDR------YSDGMRKKTAGVYIFDLDHFK 433

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND  G   GD +L ++ + +  L +     ARL G  F II        +  +F  A+
Sbjct: 434 SVNDSYGHEAGDALLSAMGQTMKRLTETNGCAARLGGEEFAIIRPW-QGWEEAKEFGDAL 492

Query: 638 RKSIAMPINLLE-REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           R ++   + +   R I+ TASIG A         S+ ++ A+     AK RG N V +  
Sbjct: 493 RLALEQTVVVRGARPISRTASIGIAMLPV-SEALSDAMRLADDFAREAKKRGRNMVCASE 551

Query: 697 VSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               R+  +       +DL  A+E  E+     PI  +  + I G EALI+W  P+   +
Sbjct: 552 EEELRALGLRGTFITLKDLQSALEGGEMQYYVQPIWNVKKKRIEGFEALIRWIQPEGIIV 611

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIAR-DIISWRDQANMPPIFILINIASKDLLDNELC 811
               F+ +  E  +I+       +   R D++S          ++  N   + L      
Sbjct: 612 MPGLFIGLLHE--VIRKPKYLSFKTQLRKDLMSKLSAFPSQ--YVSFNFNLEQLSYAGAA 667

Query: 812 EGMQALISKTLY---SPSRIKLSFSESVVMG--NPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +   +  +         I +  SE  +    N +  +  +  L+  G  + LDDFG +
Sbjct: 668 QDVHKTL--SGIIDHPGREIIIEISEKAMNSRTNLQVLKAEIVALQDYGYKIALDDFGVE 725

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ +   P   +K + +L+        + A LR +  + +++   +I + I      
Sbjct: 726 ASNLNRMQQFPISILKIDQALIKDINTSEVQRATLRGLELITQSLGIKVIVEGIESIDQA 785

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             L ++G    Q    A P+    ++  L  
Sbjct: 786 HYLYQIGFYSHQGYLHAHPMPPEDVVANLSA 816



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 52/167 (31%), Gaps = 14/167 (8%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           + ++ + A    ++G   + E    A+ GS       +       T+     + G +   
Sbjct: 126 SSLRALEAKNIEAKGAHEEAEAWLQALEGSPAATLLRNSSFIIQNTSEGWTRLTGFSRDE 185

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRP 501
             G   +++ ++   +RD  R      +   +  +      + +R        + I    
Sbjct: 186 TIGK--DFVSFLVEEERDRAREARQVALKETQTGVDEAVNTWTLRTKSGAKLQVTIMGAG 243

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           ++         +   +D+T+           A       + NR + +
Sbjct: 244 VTVPTAQETMSVSSVSDVTDL----AKQKTLAET-----LLNRNAAM 281


>gi|313906040|ref|ZP_07839393.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313469153|gb|EFR64502.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 999

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 165/415 (39%), Gaps = 15/415 (3%)

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
             F +              +   ++  D    K  N   G+  GD+ L S +  +     
Sbjct: 2   TYFFELAEEGCSELRKRGTVP-AIIFTDFKGMKGYNQKFGLQEGDEFLKSFSNVLVAHF- 59

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
             +  +R   + F +      +     + +  + + +            +   IG   + 
Sbjct: 60  SHENCSRFGSDHFCVY----TDYENAVNESARIIEQLGR----TNGARKLPLHIGIYKYD 111

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
             +I  S     A+LA    K    + +  +             I E+L  A+    + +
Sbjct: 112 DEEINVSGACDRAKLACASGKKTYESKIYMYNEKLQADTEKRQYIVENLDRAISEGWIKV 171

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            Y PIIR  +  +   EAL++W  P+ G  S  EF+   EE   I  ++LF++E + + +
Sbjct: 172 FYQPIIRTANGRVCSEEALVRWQDPEKGIFSPGEFISALEEANTIYKLDLFVVENVLQKM 231

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            + +  + +  +   +N++  D    ++ E ++  +        R+ +  +ES++  +  
Sbjct: 232 QN-QAGSGLYVVPESVNLSRLDFYACDIVEEIRRRVDDAGIPRDRLVIELTESMIADDIH 290

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILR 900
             +  + R +++G ++ +DD+G+  S  S L  IPFD +K +   ++     EK   IL 
Sbjct: 291 YMQNEIMRFKELGFTVWMDDYGSGYSSPSILQNIPFDLIKIDMQFVSQIDESEKSKIILT 350

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I+ MA  +    IA+ +     +  L  +GC  +Q  + +  L    I++  ++
Sbjct: 351 EIVEMAMALGMDTIAEGVETREQMNFLKEIGCTMLQGFYFSKALPLEEIIERYRK 405



 Score =  100 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 117/325 (36%), Gaps = 25/325 (7%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD--IVWDWDIVRDRVT--TTPDIA 435
           I+IG + I   +      +    +    S     SGD   ++  D V D     T     
Sbjct: 675 IIIGVSNIDAQMKEKEAIERFKEEKMFFSRMAALSGDYMSIYTIDPVTDEYYQYTADGYQ 734

Query: 436 TILG---LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG----YRRGRLQYE-FRVRA 487
            I+G     +             I   D++ F       +      +RGR   + +R+  
Sbjct: 735 DIVGARTYGTKFYEKAREEGKKVIFEEDKEYFYGRFKKEIILDEIRKRGRFMLDNYRLL- 793

Query: 488 ADNQFHWMIIRIRPM--SNSNGDILRYIGIANDITEQKKSLEG---ILCNAFQDNLTGIP 542
            +    ++ ++   +   + +  I+  I +  ++ + K+       +   A  D LTG+ 
Sbjct: 794 VEGTPVYVQMKATLVHDKDEDKIIMGIINVDAEVRKLKEYNMALSAMEAEATTDELTGVK 853

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            + ++L     +     + +    ++ V DI+  K IND  G   GD  ++  ++ I  +
Sbjct: 854 RKHAYLGMEKELDKKIRSGEKTEFSIAVFDINDLKIINDTFGHQAGDRYILEASQIICRI 913

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                 + RL G+ F +I     +  KI      +   +     +  +   V  + G A 
Sbjct: 914 F-QHSPVFRLGGDEFCVISQG-QDYKKIDALMEKI-ARLNEKHKISGQ---VVLAAGMAK 967

Query: 663 WTSSKITSSEMLKNAELAMYHAKHR 687
           +  ++   S++   A+  MY  K  
Sbjct: 968 Y-KNEKRVSDVFGRADREMYSNKKA 991


>gi|239994559|ref|ZP_04715083.1| sensory box/GGDEF/EAL domain protein [Alteromonas macleodii ATCC
           27126]
          Length = 862

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/601 (19%), Positives = 215/601 (35%), Gaps = 22/601 (3%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
           G    I +   +  +Q        S    +  +  +  +     +V   D     +T   
Sbjct: 263 GNASGIKLTRLYGAVQDETEIQRLSDSQHNYTDYLTSLLNNVDSVVLSIDEHGTILTANE 322

Query: 433 DIATILGLASGSMHGPIRNWLPY-IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
            + ++LG     + G     +   +   D  +    + + + +          +R  + +
Sbjct: 323 RVYSVLGFEPEELIGQDIKLISTKVQNTDAPSCFINIPAGLAWCSENGSVNECLRHKNGK 382

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
                + +   S  N  +   I    DIT Q   +E     A  D +TG+PN   F   L
Sbjct: 383 RIACEVNLSKCSVHNQQL--IIASVRDITNQNHEIEHYKQLALIDTVTGLPNLHQFERYL 440

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL----KFPD 607
                          T M + I   K+  +  G    D +L  L  R   +     +   
Sbjct: 441 GDK-AHDDKSSKPFATFMRVAICNIKEYENAFGEPTIDYILRILASRFIRIFEINKRNSA 499

Query: 608 ILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINLLEREITV---TASIG 659
            + +     F I L    +          D AI +   +  PI L    + +   T S  
Sbjct: 500 SIFKCERGAFYIHLHQYFSEEAQSLNAAHDCAILIHDHVLAPITLHNSLLNIETQTISCT 559

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENS 718
             +   S     E+L    L          +  E F V+         IK  L  A+ N+
Sbjct: 560 VPTKHFSFKKIKELLSRKPLREVKNTSTFKSEHEYFHVNAIDIERYNYIKHSLSRAISNN 619

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           ELY+   P      + ++  E L++W HP  G +S SEF+ IAEE   I  + L++    
Sbjct: 620 ELYIELQPQYD-ATKNVISSEVLLRWKHPHMGTVSPSEFIPIAEENDFIAELGLWVCNEA 678

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +   +   N     + +NI++K L   +      A+++K   S   + L  +E  ++
Sbjct: 679 CGLLSECQS--NKINTKLSVNISAKHLARADFVSKFVAIVNKWRVSHKNLTLELTEGALI 736

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRI 896
                 +  +  L + G SL++DDFG   S L+YL  +P   +K +   +     ++++ 
Sbjct: 737 RGVSVIQRRVRELAEQGFSLSIDDFGLGDSNLNYLQDLPITELKVDRVFVEAMEGSQQKT 796

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++ SI  MAK +    +A+ I     + +    GC   Q  ++  P+        + E+
Sbjct: 797 LLVTSICNMAKALHINTVAEGIETTGQLDQAKACGCGAFQGYYLDKPMSVGDWKSKISEK 856

Query: 957 F 957
            
Sbjct: 857 Q 857



 Score = 54.6 bits (130), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 8/181 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           +   L   L+ I         Q+ LA   +S  +             S    W+ D    
Sbjct: 126 VLSPLQHTLIDITRQKVELSYQYELARHPYSDKLSEQLALLEEVSSISKVGAWEIDRFTG 185

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            ++ T  +  +LGL      G           + RD  + +  +    R     +EF   
Sbjct: 186 VLSLTEVMKALLGLPRVKSVGINEVLDMLTSSDRRDLKQRVFKALKEDREFVKHFEF--H 243

Query: 487 AADNQFHWMIIRIRPMS---NSNG-DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
               +   + + +       N++G  + R  G   D TE ++  +      + D LT + 
Sbjct: 244 DKQGRRKSIKLTVFLQVQRGNASGIKLTRLYGAVQDETEIQRLSDSQHN--YTDYLTSLL 301

Query: 543 N 543
           N
Sbjct: 302 N 302


>gi|320530363|ref|ZP_08031425.1| cyclic diguanylate phosphodiesterase domain protein [Selenomonas
           artemidis F0399]
 gi|320137375|gb|EFW29295.1| cyclic diguanylate phosphodiesterase domain protein [Selenomonas
           artemidis F0399]
          Length = 690

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 171/415 (41%), Gaps = 14/415 (3%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
            +  +  +          + T +  DI+ +K  N   G + G+  L  +   + E     
Sbjct: 1   MMQFMRHVSVRMQEGGAGKLTFLYFDIENFKSFNQRYGFSQGNQFLRYMADLLRETF-EE 59

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D+LAR + + F +          IA     + + +     L    + +    G    +  
Sbjct: 60  DLLARFNDDHFAV----ATGREDIAACIQYIHERVRA-YELG---LAMEIKAGIYRPSED 111

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724
               + ++  A++A    K         F  +   +      I      A+    + + Y
Sbjct: 112 VRDIALIMDRAKIACNSIKKTYDLTWAEFDPTMEENINFRSYIISSFQEAMAQGHIEVFY 171

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P IR M  EI G EAL +W  P  G I+   F+ + E+  +   ++L+++E++ +DI+ 
Sbjct: 172 QPEIRTMTREICGFEALARWRDPIHGMIAPGTFVPVLEDAHLSPQLDLYIVEQVCKDILL 231

Query: 785 WRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            R        + + +NI+  D    ++ + ++ +  +     + + +  +E V+  + + 
Sbjct: 232 TRSNIPDWEQLRVSVNISRADFRLLDVVQAVEDIRMRYGIERTMLNIEVTEGVLNDDEKF 291

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRS 901
            +  + R R  G  + +DDFG+  S L+ +    FD +K + + +    +  K   ++RS
Sbjct: 292 LQSEIARFRATGYEVWMDDFGSGYSSLNNIKDYVFDVLKIDMAFLRSFETNPKTRVVVRS 351

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+ MAK I    +A+ +  E   + L  +GC+ +Q    + P+    ++   ++R
Sbjct: 352 IVNMAKEIGMHTLAEGVETEEQFEFLREIGCEKVQGYLFSPPIPIGKMVAYCQKR 406


>gi|91791590|ref|YP_561241.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713592|gb|ABE53518.1| diguanylate cyclase/phosphodiesterase with Phytochrome (GAF) sensor
           [Shewanella denitrificans OS217]
          Length = 710

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 217/450 (48%), Gaps = 9/450 (2%)

Query: 513 IGIANDIT-EQKKSLEGILCN--AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           I +A DI  E  + +E       A +D LTGI NR  F  +L + L  +  + N +  + 
Sbjct: 263 IEMAEDIRCELVRLIEKNQLEIIALKDPLTGIANRLMFERKLKSALQQA-LEANQQFAIY 321

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +ID+D++K +ND  G AVGD++L+ +T+R+  LL+  D++ARL G+ F +I +  +N   
Sbjct: 322 MIDLDRFKPVNDTYGHAVGDELLIQVTQRLQALLRCEDMVARLGGDEFAVIQLGISNKGD 381

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I   A  M + +  P  +  + I + ASIG        I+ +E+L  A+LA+Y  K  G 
Sbjct: 382 IERIAKLMVEEVKRPFLIEGKNIEIGASIGITICPLDAISQTELLLGADLALYEVKKSGR 441

Query: 690 NHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           N  + F  S    +++   I+  L  A EN EL +VY PII    ++IVGLEA  +W HP
Sbjct: 442 NGFKHFEPSMLLEKTNDESIRNQLLRAFENKELEMVYQPIIDSRSKKIVGLEAFTRWQHP 501

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G I++ EF+   ++  +      +ML     D   W+ Q  +  I + IN+ S   L 
Sbjct: 502 VLGFIAAQEFVSAIDKNHLNPEFVDWMLMTTFSDYQQWQRQ-GIASIPVSINLRSDQFLS 560

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++    +AL  +   + + +++   E  +  +  RS + +  L + GI   +D FG   
Sbjct: 561 LDIENKCRALSQQYQVATTWLRIDLDEPTLAIDANRSEIKINALAQHGILCNIDHFGQGL 620

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             L  L  +  +++K +  L+       K  A+   +  + + +   ++A  +  +  + 
Sbjct: 621 LSLKQLTKLKVNSLKIDSRLLMDDKKNIKTQALATILKAIGEVMNVPVVATRVEKQEVMA 680

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +   MG + +Q   +  P+    +   + +
Sbjct: 681 KAKSMGINLVQGFAIIEPMSVADVSAYMTK 710


>gi|257092657|ref|YP_003166298.1| diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045181|gb|ACV34369.1| diguanylate cyclase/phosphodiesterase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 455

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/431 (23%), Positives = 188/431 (43%), Gaps = 17/431 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG  +R + L     ++             + +DID+++++N+  G A GD V+  +
Sbjct: 29  DPVTGFLSRTAGLQAAAVLIADVGARQARLCA-IWLDIDRFRQVNESFGHAAGDGVIARI 87

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             RI   +  P  L R+ G+ F  +L +  +       A  +   I +P+ + E  I  +
Sbjct: 88  AERIRSAIGLPCALLRMGGDEFV-VLAAVRDRSAATQLARQLLVEIRLPLTVDELLIRPS 146

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--------SFRSDRVMI 707
           ASIG A         +  L+ A+ AM  AK RGGN +                  + + I
Sbjct: 147 ASIGIAL-EQVGEEPAAWLERADRAMLEAKRRGGNRLALSGDELLTGRLGVQLAREELAI 205

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+EN  L L + PI+   D  +  +EAL++        I+ + F+ +AE+  +I
Sbjct: 206 ESTLHAALENGGLRLHFQPIV-GRDGRVEAVEALMRCY-AGGHQIAPARFIPVAEKTGLI 263

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  + L        + R +A   P  + IN++   LL       + A +         
Sbjct: 264 IRLGEWSLLEG--ARCAARLRARGTPTTMAINVSRAQLLSPRFMPALHAALVCADVPARL 321

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I+L  +ES+ +      +  L   R++G+ L +DDFGT  S L+ L  +    +K + S 
Sbjct: 322 IELELTESLFLDLSPTVQANLRSAREVGVGLAIDDFGTGYSCLANLKDLSASKLKLDRSF 381

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +      R   A++RS+  + + +   ++A+ +     +  LT  G D  Q  H A P+ 
Sbjct: 382 IAALPGDRRSFAVVRSMTRLGQELGMAVVAEGVENHSQLAALTEAGVDASQGFHHARPMP 441

Query: 946 FNSILKLLKER 956
            +++LK +  R
Sbjct: 442 EHALLKWMARR 452


>gi|160877478|ref|YP_001556794.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|160863000|gb|ABX51534.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS195]
 gi|315269682|gb|ADT96535.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS678]
          Length = 754

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/762 (15%), Positives = 267/762 (35%), Gaps = 50/762 (6%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
           TI        +L+    +   ++ + S+    L+           I    S + +    +
Sbjct: 22  TILKTSLLRIILLSGAMLTASIVLHSSLIAYQLNLAFI-------ISITVSFLTVLFLTL 74

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
            F   YL  +     +  +  +    I +              +  + L ++ L+     
Sbjct: 75  WFTGKYLLAS--SISLLAMVIAACISILLFVPDFNLSQAGITFLYTLPLMALFLFGRKVA 132

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +          +LL+    +  I  I + +  T    N ++       + L  + +  T 
Sbjct: 133 VIMMFFNVLPFLLLLRNQNIPPIIDIDISLPATHAYLNGLLFVFFNICIPLSAMRLLKTQ 192

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             H          +    ++ +     +G   +  +     +        I G       
Sbjct: 193 KVHAQQMIQHQNDLQRTLDQYAEIFENNGTASFFCNEDGVILNLNNAAKEIAG-EVTLNR 251

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             + +          +       + +                +N   +++ +     +  
Sbjct: 252 TRLCDIFELTEDTSTNLLAAAFPTHLKN--------------NNSIKYLLQKASLEHHDT 297

Query: 507 GDILRYIGIANDITEQKKSLEGILCNA-------FQDNLTGIPNRQSFLDRLTTILDLSA 559
                 +   +D+TEQ      +           F D +TG+PN            + + 
Sbjct: 298 -----LLFHCHDVTEQANHAIELSRLKKHHISTHFYDLVTGLPNE-------NHWYNPAP 345

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
           +  +L  TV ++ ID   +IN   GI+VGD +L +    +         + R  G  F +
Sbjct: 346 STIHLDMTVALVKIDNLSQINAAFGISVGDAILKAFATELKNRFGHHAKIYRFRGASFAL 405

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAE 678
              S        + A+ +R+ I   + L  E++I           + +K +  +  +   
Sbjct: 406 EFTSLPLISP-ENLALQLRERIPTNLQLKHEQQIEYHLECRVGCSSGNKASPQQAAEQCL 464

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +A+          V    + +   +    K  +  A++++ L +   P +R  D  I+  
Sbjct: 465 IAIKQTTQASPVMVYYIGLINNLLEASSQKAKIRDALKHNRLEMWLQPKVR-ADGHIISF 523

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +        I  + F+ I E   +     + +  ++ + I SW     +  + I  
Sbjct: 524 EALARMFDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPKNVPL--VRIAF 581

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ +D+L +   + +             +++  +E+ V    + +   L  L ++G+S+
Sbjct: 582 NLSGQDILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTHKETGRRLNTLARMGVSI 641

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+
Sbjct: 642 AIDDFGTGHASLSQLIDISADTIKIDRCFVSQMGISERHTQIVNAAILLAKSLKLNVIAE 701

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            I  E  + +LT +GC+  Q      P   N  LK  + + P
Sbjct: 702 GIETEAQLLQLTALGCEQFQGYLFGKPAPANLWLKTFQMQTP 743


>gi|327439597|dbj|BAK15962.1| FOG: EAL domain [Solibacillus silvestris StLB046]
          Length = 729

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/435 (25%), Positives = 206/435 (47%), Gaps = 19/435 (4%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              AF D  +G+ N + F      I+    T +     + +I+  +Y+ I D+     GD
Sbjct: 301 HRLAFCDVASGLNNYERF-----KIILNDFTANQSMGHLYIIEPGEYQNIIDLYDRQGGD 355

Query: 590 DVLVSLTRRIGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           +VL  L  RI  +      I+AR + +   II+ +  +  ++    I   + ++ P  + 
Sbjct: 356 EVLRQLANRIQNIPSFADSIIARYTHS--AIIVATRLSLREMKIPPIVAEQFLSEPYYID 413

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI- 707
            +E+ +T  IG +S++ S+I   E ++ A++A+  A    G  +++F +S   S    + 
Sbjct: 414 GKEVYLTLKIGTSSFS-SRINYIEAVRQADIALSSALKVTGTVIKNFNMSLIESVEQEMN 472

Query: 708 -KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
                   ++NSE + +  P + LM  EI   EAL +W+    G +S + F+ +AE    
Sbjct: 473 VLAHFARGLKNSEFFPMLQPKVNLMTGEIESFEALARWNSTDLGVVSPTLFIPVAENTGN 532

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIF---ILINIASKDLLDNELCEGMQALISKTLY 823
           I  ++L + +++      W+ Q +   +    + INI+     +    E   ALI     
Sbjct: 533 IYKVDLEIFKKVL----LWQKQRHDAGLKLYQVSINISPSHFYNPAFVESSIALIESYKI 588

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  IK   +ESV + N  R++ ++  L+++GI  ++DDFG   S LSYL  +PF  +K 
Sbjct: 589 DPKFIKFEITESVELENVIRAKKIIDELQQLGIETSIDDFGVGYSSLSYLQELPFKEIKI 648

Query: 884 NGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + S +      +  A++++II ++ N+    +A+ I  E    EL R+GC   Q  +   
Sbjct: 649 DKSFVDNLANPRMNAVIKTIIQLSDNLNMVSVAEGIETEEQHLELKRLGCQVGQGYYYYK 708

Query: 943 PLGFNSILKLLKERF 957
           P+    I +LL ++ 
Sbjct: 709 PMLIEQINELLNQQL 723



 Score = 39.9 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 24/130 (18%)

Query: 411 VLGSGDIVWDW--------DIVRDRV---------TTTPDIATILGLASGSMHGPIRNWL 453
           +  S + ++DW        D+    +                   G     + G   + L
Sbjct: 7   LSVSDEGLYDWLCQMARQIDLAVAIINPNKGYTIEFVNQIFTQTTGYREDDVLGSTLSLL 66

Query: 454 PYIHINDRDN--FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
                +  +    +  +++ + ++     Y       D    W  +R  PM N  G +  
Sbjct: 67  QGPLTDMLNENSIQESIENGLTFKTSSFHY-----RKDGYAFWNEVRHLPMFNQQGILQY 121

Query: 512 YIGIANDITE 521
            + I  D+T+
Sbjct: 122 CVIIMKDVTD 131


>gi|152989173|ref|YP_001348024.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase
           [Pseudomonas aeruginosa PA7]
 gi|150964331|gb|ABR86356.1| cyclic diguanylate phosphodiesterase/diguanylate cyclase
           [Pseudomonas aeruginosa PA7]
          Length = 600

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 187/427 (43%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 180 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 237

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +   RI   L     L ++S  RFG++L  +          I + ++   P+      I 
Sbjct: 238 AARDRIRSEL-PDCTLYKISPTRFGLLLPRQQQEQS-EPVCIRLLEAFEKPVVCHGIPIK 295

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G    T+       + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 296 ANPGLGVLPLTADHPHGEQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLASL 355

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +L Y P I L   +  G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 356 SQAIGTEEGFHLAYQPKIDLATGQCTGVEALLRWRHPQLGPVSPAEFVPLAEKTALMRPL 415

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ ++ D+   E    L        S I+L
Sbjct: 416 SDWVLRHALEQLALWH--GRNIPLTLAINVSAAEMEDSGFLEETVRLARHHGLDLSAIEL 473

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +    R +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 474 EFTESVLIRDASAVRAVLLRARELGMGIAVDDFGTGYSNWTYLRDLPVTAIKLDQSFTRD 533

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   +IA+ I     +  L   GC   Q   +A P+  + 
Sbjct: 534 LGDSPKAQSVTQAVIGLASQLGYRVIAEGIETPETLHLLQAWGCREGQGYLIARPMLADQ 593

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 594 LEDWLQR 600


>gi|261821846|ref|YP_003259952.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pectobacterium wasabiae WPP163]
 gi|261605859|gb|ACX88345.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pectobacterium wasabiae WPP163]
          Length = 592

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 96/429 (22%), Positives = 195/429 (45%), Gaps = 17/429 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNRQ  +D ++ I D+      L   +  IDI    ++   LG+   + +L  +
Sbjct: 167 DGVTLLPNRQHLIDDISHITDIHERY--LLILIDTIDISYAYEMGCALGMPTVEGLLKDI 224

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSL---KIADFAIAMRKSIAMPINLLEREI 652
              +   L  PD L   +  RF +++ ++  +    ++   A  + +SI+  I L     
Sbjct: 225 GIFLRLSLSSPDNLYCAAVGRFALLVKADKKAQILAELDACAERIHESISSHIPLK---- 280

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
            +   +G+  +         +L+ +  A+                    +     +  +L
Sbjct: 281 -LEFFVGYTEFQIPASDPQRILRESMSALRASITQNIRQFAYEPEADQAQQIAFTLLNEL 339

Query: 712 CLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
              V+N+   LYLVY P + +    ++G EALI+W HP+ G I   +F+ +AE   +++ 
Sbjct: 340 ADVVQNNKPGLYLVYQPKLSIKTNTVIGAEALIRWRHPELGEIYPDQFIPLAEGTTLMRP 399

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++  + A  +  WR Q       + IN+++++  +N+    + A++     +P  I 
Sbjct: 400 LTDWVTRKAASQVKQWRQQG--VNFPVSINVSARNFSENDFIPRLVAILDSHGLTPQDID 457

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+  +     +   +  L+++G ++ LDDFGT  S LSYL  IP   +K + SL+ 
Sbjct: 458 IECVETQKIIESAETLATIQTLKQMGFTIALDDFGTGYSNLSYLRNIPSTVIKLDKSLIK 517

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 K   I++SII M   ++  ++A+ +  +  ++ L R GCD +Q  + + P+   
Sbjct: 518 DIKTDRKSRVIVQSIINMLHKLDYIVLAEGVENKETLEHLARFGCDEVQGYYFSRPIPPE 577

Query: 948 SILKLLKER 956
           + +  + E 
Sbjct: 578 AFIAWMDEY 586


>gi|33596540|ref|NP_884183.1| hypothetical protein BPP1922 [Bordetella parapertussis 12822]
 gi|33566309|emb|CAE37222.1| putative membrane protein [Bordetella parapertussis]
          Length = 458

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 178/436 (40%), Gaps = 21/436 (4%)

Query: 525 SLEGILCNAFQDNLT-GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
               +  +A  D LT G   R+         L L          + ++++  + +++ +L
Sbjct: 31  LRRQMARDALTDALTVGELRRRV------HALVLGKRQRVYSGAMFLVEVVHHPELSAML 84

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+     +L  + +R+  +      +AR S + F +      +     D A  +  +++ 
Sbjct: 85  GLEDNKLLLAMIAQRLQ-MQSDYFQVARHSSDSFMVWAPDL-DPRSARDVAPEVLDALSQ 142

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FR 701
           P  L  + + V   +  A +        E+ ++  +AM H     G     F  S    +
Sbjct: 143 PYELRGQPLIVGFRLSGALYAQHGACFDELERSLHIAMLHLDESAGAAWNMFEPSMLEHQ 202

Query: 702 SDRVMIKEDLCLA---VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++ DL +A       +  + Y P+   +   I G EAL++W HP  G++S +  +
Sbjct: 203 RHYQGLEHDLRVALVSSSMDQFEVCYQPVCDSVTGTIYGCEALLRWHHPVHGDVSPALVI 262

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE   +I  +  ++LE      I+W          + +N++ + +  +EL   +   +
Sbjct: 263 ELAERTGLIVPLGAWVLETACSRAITWPAA-----WRLHVNVSVRQMYADELPAQVALAL 317

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + +  S  R+ L  +ES+     ER    L  +R  G+ + LDDFG   S L++L  +P 
Sbjct: 318 AASRLSAQRLVLEITESLFTQQYERHVATLNGMRAKGVRVALDDFGAGYSSLTHLRRLPI 377

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK +   +           ++ +++ M + +   ++A+ +      + L  +G   +Q
Sbjct: 378 DWVKLDRGFVAEIEFDAVSREVVSALMGMCRALGLAVVAEGVETPAQREILKALGRREMQ 437

Query: 937 DSHVASPLGFNSILKL 952
              +  P+    I +L
Sbjct: 438 GFLLGRPVSAERIREL 453


>gi|157960190|ref|YP_001500224.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella pealeana ATCC 700345]
 gi|157845190|gb|ABV85689.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           pealeana ATCC 700345]
          Length = 873

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 198/427 (46%), Gaps = 5/427 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I ++K     ++ +A  DNLTG+PNR  F++RLT  +         R  V+ ID+D++K 
Sbjct: 434 INQRKCIERQLVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLNRFAVLFIDMDRFKL 493

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD  L+   +R+ + ++  D+LARL G+ F I L S N      D A  + 
Sbjct: 494 LNDTLGHLQGDRFLIETAKRLQQCIRSNDMLARLGGDEFVIFLDSINGQQDAEDVAERVL 553

Query: 639 KSIAMPINLLEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  ++   +ASIG A    S   TS  +L++A+ AMY AK  G      F  
Sbjct: 554 AELSRPYELANQQFNSSASIGLAMSGLSHSDTSESILRDADTAMYQAKSHGKGCYVIFNH 613

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  +   + ++ +L  A+ N EL L Y PI+ L  ++ +  E  + W HP  G +  +
Sbjct: 614 GVNQQQIKDIKLENELKNALLNQELKLSYLPIMALGSQQTLAFEPRLFWHHPTLGKLKQA 673

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   IAE   M+  ++ ++LE +               + + ++I+S+ L        ++
Sbjct: 674 QLNNIAEHCNMVIELDNYLLELV-NQSYHHMQLEYGSQLQLHVSISSQHLNHKYALRALK 732

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +  ++ + + L F+E   + N          L K+ + L ++ +G+  S +S L +
Sbjct: 733 NRVKQCQFNINELTLFFNEKAFVQNTNNHISAFDSLSKLDVKLGIEAYGSAHSAISSLTF 792

Query: 876 IPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + S       ++   ++++    A+ +E  I A  I        L  +G   
Sbjct: 793 LPIQALKLDSSYAAHLNSQQHVKLVKAYFNAAQALEFEIFAVGISNHKQCAILQELGFTK 852

Query: 935 IQDSHVA 941
            Q S + 
Sbjct: 853 GQGSLLG 859


>gi|332298824|ref|YP_004440746.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
 gi|332181927|gb|AEE17615.1| diguanylate cyclase/phosphodiesterase [Treponema brennaborense DSM
           12168]
          Length = 765

 Score =  318 bits (816), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 178/438 (40%), Gaps = 13/438 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K  + +    F D +TG  +   F       +  +        T + +DI  +K IND+
Sbjct: 314 RKYRKELETALFVDPITGGISCMKFEQLARKRITEALP---GTYTFLSLDICGFKLINDI 370

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   G+  L+     +   L    I+ R++ + F +++ +  +  +I         ++ 
Sbjct: 371 NGGGGGNATLMYTHSVLSTFLNDETIMCRVNADVFNVLMPTV-SEAQIKKMLTEFSAALN 429

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--- 699
                 + +  +    G    + S ++   +   + +A   AK +    + ++   +   
Sbjct: 430 KFNETRKNKYFLRIKAGLYMISDSGLSFMAIRDRSNIARKLAKEKQRATLFAYEFYNDAE 489

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              ++     +  +  A+ N E  +   P I +   +I G EAL++W++P +G +   +F
Sbjct: 490 LLRQNTEREFENSMEQALRNREFKMYLQPKINIQTGKIAGAEALVRWENPSYGLLPPDKF 549

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E    I  I+L++ E+    +    D+     + I +N++   L D +  +    +
Sbjct: 550 IPVFERNGFITMIDLYIFEQACSFLRRQIDENAAV-LHISVNLSRAHLFDPDFLQKFIVI 608

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +K       ++   +ES+          ++ ++   G S ++DDFG+  S L+ L  IP
Sbjct: 609 RNKYDIPSQLLEFEITESMAFQQSAIIADVINKIHAAGFSCSIDDFGSGYSSLNALADIP 668

Query: 878 FDTVKFNGSLMTGSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            D +K + +     ++   +   I+ S+I +AK +   ++A+ I        L  + CD 
Sbjct: 669 ADVLKLDKAFFRNDSQKENRNHRIIASVIALAKQLGMKVVAEGIETTSQAHFLQNVRCDI 728

Query: 935 IQDSHVASPLGFNSILKL 952
           IQ    + PL        
Sbjct: 729 IQGYIYSRPLTVADFTLF 746


>gi|297537478|ref|YP_003673247.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
 gi|297256825|gb|ADI28670.1| diguanylate cyclase/phosphodiesterase [Methylotenera sp. 301]
          Length = 753

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 210/437 (48%), Gaps = 7/437 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-SATDDNLRPTVMVIDIDKYKKINDV 582
              + +      D LTGIPNR      +   +D  S         +++ID+D +K IN+ 
Sbjct: 313 HMTQQLETQNRTDYLTGIPNRNHIEHVVGANIDNVSKLYGRGYNGLLIIDVDGFKAINNT 372

Query: 583 LGIAVGDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            G + GD +L ++   +  + LK     AR+ G+ F +++ +  N   I   A  + + +
Sbjct: 373 FGFSTGDYILKTIAENLYVDSLKKGYHFARIDGDEFTLLMCNIKNRQDIQAQAWHVHRLL 432

Query: 642 AMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             P+++    I +  SIG +  ++  K + + MLK +E A+  AK       E  +    
Sbjct: 433 DKPMSINGIPIKMAFSIGISISSAFEKSSFTTMLKESERALMWAKKSQSQVEEYDKNKDL 492

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             DR  +  D   AV   +L + Y P + +  +++ G+EALI+W HP+ G ++  +FM  
Sbjct: 493 EEDRSWVLTDFRRAVAEHQLIVYYQPKLHINSQKVTGVEALIRWQHPERGLLTPDKFMQQ 552

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE  +I ++   +L    +    W+ Q     I I +N+ ++DL++ +L   ++  + +
Sbjct: 553 IEETDLIHSLFTLVLNDTTKQWRIWKAQ--DLEICIALNVTARDLMNYDLANEIRVALIQ 610

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  +++  +ES  + NP  ++  L  L  +G+ +++DD+GT  S L +L  +P   
Sbjct: 611 NNMLAMYMEIELTESSALSNPAYAKKALTNLMDLGVKISIDDYGTGYSSLLHLQQLPLHY 670

Query: 881 VKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +      +    I+RS I +AKN+   +IA+ +      ++L  +GC   Q +
Sbjct: 671 LKIDQQFIREVLNDKYSETIVRSTIELAKNLNLEVIAEGVENVEVYQQLKHLGCYAAQGT 730

Query: 939 HVASPLGFNSILKLLKE 955
            ++  +  +S++ ++K 
Sbjct: 731 LLSKAIPADSVIGVIKA 747


>gi|315123065|ref|YP_004065071.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016825|gb|ADT70162.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 669

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 89/428 (20%), Positives = 177/428 (41%), Gaps = 16/428 (3%)

Query: 537 NLTGIP----NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            LT  P    N   F   L   L  +   +     ++ I I +++ IND+LG   G  ++
Sbjct: 240 QLTRTPSVVTNESDFYHHL--ALCEA---NKECYALVYIGIAQFQLINDLLGAEDGSHLI 294

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   +  + K P  +   S +RF + +    +  +I          +   +     + 
Sbjct: 295 KLVLEVLKGVSKQPVKVLHKSADRFVLFVPEIKSDSEILTDLNKAMNDLKKLLPSKYNDA 354

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKED 710
            V     +  +    +   E++   +L M +           F     +       +   
Sbjct: 355 HVQLYGVYGLFPEDSLEGKELVNQMQLTMNYQVSEQQRICSRFDPQLVADYKKNFELSRL 414

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP-KWGNISSSEFMLIAEELCMIKA 769
           L  AV N EL L + P +     +I+  E LI+W  P K G +  + F+ IAE    I +
Sbjct: 415 LLTAVSNDELSLRFQPKVDTKTGQILIAETLIRWYEPSKHGWVPPAHFIPIAECDGQIIS 474

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRI 828
           I  +++ +  + +  W +      + + IN++++ L D  +  + M   +S+     S++
Sbjct: 475 IGRWVISQSCKTLKYWTENNTGVRV-LAINLSARQLKDDPDWIDFMLECLSRNNLESSQL 533

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               +E+ ++ +       L RLR +G  L +DDFG   S L YL  +P D VK + +L+
Sbjct: 534 VFELTETYLIEDFAICEQQLIRLRTLGFKLLIDDFGVGYSSLGYLSKLPVDGVKLDRALI 593

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     +++R+I  M+ ++   ++A+ +      + + ++GCDYIQ  + + PL  
Sbjct: 594 ADIESSLAMQSMIRNITRMSHDLNLKVVAEGVETAYQCELIKKLGCDYIQGYYYSEPLEQ 653

Query: 947 NSILKLLK 954
           +     L 
Sbjct: 654 DDFCNYLS 661


>gi|330874516|gb|EGH08665.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 463

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/465 (23%), Positives = 200/465 (43%), Gaps = 15/465 (3%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
           +       AVL     IL F+    L     +      +   + G   +++  +   V +
Sbjct: 4   YSRGALRTAVLYGLLSILWFMACDILLPLFIEEPARLAVCHQMTGYAWVLLSAVTIFVAR 63

Query: 389 HVLATGYFSQGIFSDGE----RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
             L      +  F   +    R  LA      + + V   D     V        I G  
Sbjct: 64  DRLRKIIGGEAHFERQQDDYDRLRLAEAVFDSTREGVLVSDAQGRIVHVNRAFVDITGYQ 123

Query: 442 SGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
           +  + G     +    H    + +R +  S +    G+   E   R    + +     IR
Sbjct: 124 AEEVLGFNPSTFKSGRH--GPEFYRQMYHSLLS--VGQWSGEIWNRRKSGEIYPQWQTIR 179

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +S  +G    ++ + +DIT  K+S   +      D LT +PNR    DR++  L  +  
Sbjct: 180 SVSGDDGQPRHFVAVFSDITAIKRSEHELAQLVHYDGLTDLPNRLLLTDRISQALTSA-R 238

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  ++++D+D +K IND LG  VGDD+L ++  R+  L      +ARL G+ F ++
Sbjct: 239 FSKRGCGLLLVDLDHFKNINDSLGHNVGDDLLRAVAERLKGLSDNEMTVARLGGDEFALL 298

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           + +    ++ A  A  + + +  P  +   ++ VTASIG + +    +++ ++L+NA+ A
Sbjct: 299 VKNCPQMVQAAALAQQVIEVLKAPFAIAAHQLFVTASIGISLYPGDALSAEQLLRNADSA 358

Query: 681 MYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           ++ AK  G +    +     +    RV +  +L  A+E  EL + Y P+  L+   + G+
Sbjct: 359 LFKAKSEGRDCYALYTEELTAHAQQRVQLAGELRQAIEQGELRVFYQPVHDLITRSVCGV 418

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           EAL++W HP  G +S  EF+ IAE+  +I  I+ ++L    R + 
Sbjct: 419 EALVRWQHPTRGMVSPGEFIPIAEQNGLIADIDAWVLNAACRQMR 463


>gi|183219723|ref|YP_001837719.1| hypothetical protein LEPBI_I0299 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909859|ref|YP_001961414.1| signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774535|gb|ABZ92836.1| Signal transduction protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167778145|gb|ABZ96443.1| Hypothetical protein; putative membrane protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 630

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 101/427 (23%), Positives = 187/427 (43%), Gaps = 12/427 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           KS + I   A+ D+LT +PNR  F   +   + L          V++I+I   K IN + 
Sbjct: 206 KSNQQIDKLAYFDSLTQLPNRYLFERSIQNRISL----GQSEAYVLLINIKGIKVINALH 261

Query: 584 GIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           GI  GD +L  +   + +    +   ++A L G+ F + + + ++  +I D  +    + 
Sbjct: 262 GIGFGDQILTLIGNILKQYTLERPDIMVASLGGDEFILWIQN-SSRTRIEDAIVKFDLNN 320

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              +        +   +    + +      E+++   +AM  A+     H+  F     +
Sbjct: 321 NQTLTPDRLGHRLQYRVSGIHFPTEANDLDEVIRKLSIAMNVAREESIRHLVWFEPEMEK 380

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +K  L  A+ENSE  + Y   + +  + +VGLEAL +W+  ++G+IS  EF+ 
Sbjct: 381 KIEREQKLKNQLEKAIENSEFRIAYQEKVDIKTQTVVGLEALARWNVLEFGDISPEEFIP 440

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           I  +  +I      + +++   I    +      I I INI+    L     E +   + 
Sbjct: 441 IITKSDLIVPFGKNIFQKVVSQIPKLLESYGHQ-IKISINISPIFFLYPNFNEYVIEYLK 499

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K    P+ +    +E V +   E  + ++  LR  GIS++LDDFG   S L Y+  I FD
Sbjct: 500 KQSVDPNILIFEITEDVFIDEIETIQKIVSSLRSNGISVSLDDFGKGYSSLHYMQKIQFD 559

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S +     +++   +L SI  +A ++    IA+ I  E  I  L +  C  +Q 
Sbjct: 560 ELKIDKSFLDDIAISDRNFLLLESICHLADSLGLKTIAEGIEREEQIIRLKKTSCHIVQG 619

Query: 938 SHVASPL 944
              + P+
Sbjct: 620 YIYSKPI 626


>gi|227326383|ref|ZP_03830407.1| putative signaling protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 592

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 192/437 (43%), Gaps = 23/437 (5%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID---IDKYKKINDVLGIAVGDDVL 592
           D +T +PNRQ  +D ++ I     TD +    +++ID   I    ++   LG+   + +L
Sbjct: 167 DAVTLLPNRQRLIDDISHI-----TDIHEPYLLILIDTIDISYAYEMGCALGMPTVEGLL 221

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF---AIAMRKSIAMPINLLE 649
             +   +   L   D L   +  RF +++ ++     +A+    A  + +SI   I L  
Sbjct: 222 KDIGVFLRLSLNSSDNLYSAAVGRFALLVKADRKEQVLAELDACAERIHESITSHIPLK- 280

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIK 708
               +   +G+  +        ++L+ +  A+  A                 +     + 
Sbjct: 281 ----LELFVGYTEFQIPAKDPQQILRESMSALRAAITRNIRQFAYDPEADQAQQIAFTLL 336

Query: 709 EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +L   ++N+   LYLVY P + +    ++G EALI+W HP+ G I   +F+ +AE   +
Sbjct: 337 NELADVLQNNKPGLYLVYQPKLSIKTNTVIGAEALIRWRHPELGEIYPDQFIPLAEGTTL 396

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           ++ +  ++    A  +  WR +       + IN+++++  +N+    +  ++     +P 
Sbjct: 397 MRPLTDWVTREAACQVKQWRQEGLT--FPVSINVSARNFSENDFIPRLITILENHGLTPK 454

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I +   E+  +     +   +  L+++G ++ LDDFGT  S LSYL  IP   +K + S
Sbjct: 455 DIDIECVETQKIIESTETLATIQTLQQLGFTIALDDFGTGYSNLSYLRNIPSTVIKLDKS 514

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+       K   I++SII M   +   ++A+ +  +  +  L   GCD +Q  + + P+
Sbjct: 515 LIKDIKTDHKSRVIVQSIISMLHKLNYIVLAEGVENKETLDYLAHFGCDEVQGYYFSRPI 574

Query: 945 GFNSILKLLKERFPLVK 961
             ++    L  R     
Sbjct: 575 PPDAFTTWLTTRSSQTS 591


>gi|257438199|ref|ZP_05613954.1| GGDEF family protein [Faecalibacterium prausnitzii A2-165]
 gi|257199361|gb|EEU97645.1| GGDEF family protein [Faecalibacterium prausnitzii A2-165]
          Length = 1012

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/686 (17%), Positives = 238/686 (34%), Gaps = 41/686 (5%)

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L      A      FS    IA +  ++ Y      S     L   V     F     +K
Sbjct: 323 LTLRLHSAHTHRYLFSNALYIASVSPLNLYSRNAPFSGKHWLLVGSVPAVQLFAFAQRLK 382

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++LI   +     ++                 A       I  L    + +    
Sbjct: 383 QLFSFIMLITLAVGFVCSWLISRRLARPVAKLSAEVAAAEADSSAIPHLSATGIRELDQF 442

Query: 393 TGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-P 448
           +  F+Q    +     R    +  +   +  +++  D V  T +  ++LGLA        
Sbjct: 443 SSSFTQLSKDVLDSSTRFLRIMKLASAELGGYELRDDSVYVTDNFFSMLGLAQEQPDPLT 502

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNG 507
            + +   +           L+    YR        F +   D   H++ +RI  +    G
Sbjct: 503 PKAFRALM---------GTLEQRWFYRLSPANNKVFAIPQPDGSTHYITLRITHIL---G 550

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +    +G+A D+T      + I      D LTG+  R++F      +             
Sbjct: 551 ESASEVGLAEDMTTTVLEQQRIEHERDYDTLTGLYRRRAFDRACDALFQQPEKLG--CAA 608

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++D+D  K+IND  G   GD  +    +          I +RLSG+ F I      + 
Sbjct: 609 LLMMDLDNLKQINDTYGHDWGDQYIRQTGQCFAANTPASTICSRLSGDEFLIFFYGYQDQ 668

Query: 628 LKIADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
            ++      +  ++   +++    +++ ++ S G A + +       + K A+ AMY  K
Sbjct: 669 AQLRAQLELLSAALQRSVSILPNGKQLHISISGGIAWYPTDGHDLLTLKKYADFAMYQVK 728

Query: 686 HR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           H   G             +     ++D  L ++   +   + PI       +   EAL++
Sbjct: 729 HSHKGRMCDFDIGSYHQEAYAAQTQQDFELLLQEELVSYHFQPIYSARSGRVAAYEALMR 788

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIAS 802
            D P     S ++ M +A E   +  I    +   +      + Q        + IN   
Sbjct: 789 VDLPT--LHSPAQVMQLAHETGRLYEIERITVFHSSEIFQRMQAQGLLQSDALLFIN--- 843

Query: 803 KDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI-GIS--L 858
             + +  L  E ++    +      R+ +  +E   +      R  L R R I G S   
Sbjct: 844 -SIANVSLTVEDVEEYAQRYPELLKRLVVEITEQEDLD-----RACLERKRNIPGFSGSF 897

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            LDD+G+  S    L  +    +K + S++ G    R    I+ +I+  A      +IA+
Sbjct: 898 ALDDYGSGYSNELNLLELSPRYIKIDISIVRGIDTDRDKQQIVSNIVAYAHARSMQLIAE 957

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVAS 942
            I  E  ++ +  +G D +Q  +++ 
Sbjct: 958 GIETEAQLRTVIGLGVDLLQGYYLSR 983


>gi|116249205|ref|YP_765046.1| GGDEF/EAL domain-containing protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115253855|emb|CAK12250.1| putative transmembrane GGDEF/EAL domain protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 665

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 102/426 (23%), Positives = 186/426 (43%), Gaps = 14/426 (3%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D LTGI NR++   RL      +  D+    +V +ID+D +K+ ND  G   GD
Sbjct: 241 LELSHTDYLTGISNRRALDRRLDECWA-AWKDERRDFSVFLIDVDFFKRFNDRYGHQEGD 299

Query: 590 DVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
             L  +   +  +++  D ++ R  G  F +++ +    + +        +  ++ I   
Sbjct: 300 RCLTVIANALKAVVESSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHD 359

Query: 649 ERE---ITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           ER     TVT SIG A            +++ A+LA+Y+AK  G N + SF     R D 
Sbjct: 360 ERPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFDPLLPRPDD 419

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A++   + LVY PI  + + +   +EAL++   P    +S   F+ +AE
Sbjct: 420 HAGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAVSPKTFIPVAE 479

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
               I  +  + +E   RDI             + +N++   L        +  ++++  
Sbjct: 480 RSGAILELGRWAIETACRDI-----LMTDRMATVSVNVSPIQLRSPGFAASVADILARCG 534

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              SR+ L  +E + M         +  LR +G+ + LDDFG   + LS+L  I F TVK
Sbjct: 535 VCGSRLALEVTEGLDMDMQSEVLKCIADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVK 594

Query: 883 FNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + + +   S  + + +L+ +I + +N   TI+ + +        L  +  D +Q  H+ 
Sbjct: 595 VDRTFLHDCSNPRGLMMLQDMIALIRNRGNTILVEGVETAAQFSLLKDLRIDRVQGFHMG 654

Query: 942 SPLGFN 947
            P+   
Sbjct: 655 MPVSAE 660


>gi|153002740|ref|YP_001368421.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
 gi|151367358|gb|ABS10358.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS185]
          Length = 754

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/757 (16%), Positives = 264/757 (34%), Gaps = 40/757 (5%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
           TI        +L+    +   ++ + S+    L+           I    S + +    +
Sbjct: 22  TILKTSLLRIILLSGAMLTASIVLHSSLIAYQLNLAFI-------ISITVSFLTVLFLTL 74

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
            F   YL  +     +  +  +    I +              +  + L ++ L+     
Sbjct: 75  WFTSKYLLAS--SISLLAMVIAACISILLFVPDFNLSQAGITFLYTLPLMALFLFGRKVA 132

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           +          +LL+    +  I  I + +  T    N ++       + L  + +  T 
Sbjct: 133 VIMMFFNVLPFLLLLRNQNIPPIIDIDISLPATHAYLNGLLFVFFNICIPLSAMRLLKTQ 192

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             H          +    ++ +     +G   +  +     +        I G       
Sbjct: 193 KVHAQQMIQHQNDLQRTLDQYAEIFENNGTASFFCNEDGVILNLNNAAKEIAG-EVTLNR 251

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRG--RLQYEFRVRAADNQFHWMIIRIRPMSN 504
             + +          +       + +        L  +  +   D               
Sbjct: 252 TRLCDIFELTEDTSTNLLAAAFPTHLKNNNDAKYLLQKASLEHHDTLLFHCH-------- 303

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              D+      A +++  KK         F D +TG+PN            + + +  +L
Sbjct: 304 ---DVTEQANHAIELSRLKKHHISTH---FYDLVTGLPNE-------NHWYNPAPSTIHL 350

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             TV ++ ID   +IN   GI+VGD +L +    +         + R  G  F +   S 
Sbjct: 351 DMTVALVKIDNLSQINAAFGISVGDAILKAFATELKNRFGHHAKIYRFRGASFALEFTSL 410

Query: 625 NNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                  + A+ +R+ I   + L  E++I           + +K +  +  +   +A+  
Sbjct: 411 PLISP-ENLALQLRERIPTNLQLKHEQQIEYHLECRVGCSSGNKASPQQAAEQCLIAIKQ 469

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                   V    + +   +    K  +  A++++ L +   P +R  D  I+  EAL +
Sbjct: 470 TTQASPVMVYYIGLINNLLEASSQKAKIRDALKHNRLEMWLQPKVR-ADGHIISFEALAR 528

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                   I  + F+ I E   +     + +  ++ + I SW     +  + I  N++ +
Sbjct: 529 MFDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPKNVPL--VRIAFNLSGQ 586

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           D+L +   + +             +++  +E+ V    + +   L  L ++G+S+ +DDF
Sbjct: 587 DILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTHKETGRRLNTLARMGVSIAIDDF 646

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           GT  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+ I  E
Sbjct: 647 GTGHASLSQLIDISADTIKIDRCFVSQMGISERHTQIVNAAILLAKSLKLNVIAEGIETE 706

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
             + +LT +GC+  Q      P   N  LK  + + P
Sbjct: 707 AQLLQLTALGCEQFQGYLFGKPAPANLWLKTFQMQTP 743


>gi|163816495|ref|ZP_02207859.1| hypothetical protein COPEUT_02684 [Coprococcus eutactus ATCC 27759]
 gi|158448195|gb|EDP25190.1| hypothetical protein COPEUT_02684 [Coprococcus eutactus ATCC 27759]
          Length = 609

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 170/433 (39%), Gaps = 20/433 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+++  TG  N     ++L             +      DI  ++ IN+V+G  V  ++ 
Sbjct: 181 AYREPATGYYNWTWLKEKLEQ----CEYIGLDQFIFARFDIKGFRLINNVMGRDVAKELF 236

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + +        A+ + + F +I+        +        +   +P     ++ 
Sbjct: 237 RYVCDAMSKQDWILYS-AKCTSDDFAMIIKYMPEDEIVNRLYTFFEEIGQLPT---NKKY 292

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-----VESFRVSSFRSDRVMI 707
            +  S G   +       +  ++  ++A          +     + +  +          
Sbjct: 293 KIFYSCGLVFYDE-FEKINMSMRIEDMAQMAHLQCIKTNVNEIKIYTSEMKREYVMAQQY 351

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           K +L  A+EN +L +   P     ++ + G EALI+W +     +S   F+   E    I
Sbjct: 352 KLELPDAIENEDLMVYLQPKYNPQNDTLTGAEALIRWFYKGGDILSPKYFVPQFEADGTI 411

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ ++L ++ +    W  +   P   I  N++   +   +L   +  ++ +     S 
Sbjct: 412 DIIDRYVLRKVCKKFKEW-KELGYPLYPISCNLSRHQISRPDLIYILCDIVDEYGVDHSL 470

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I    +ES    + +    +L +L+  G  +++DDFGT  S ++ L  +P D +K + S 
Sbjct: 471 IDFEITESADFADVQYLIEVLNQLKDKGFKISMDDFGTGYSSMALLKDMPLDIIKIDKSF 530

Query: 888 MTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + G        K + + + I+ MA+++    +A+ +      + L   GC YIQ  + + 
Sbjct: 531 IDGIATGELNNKDMLMTQDILTMARHLGIKSLAEGVETFEQKEYLREWGCHYIQGYYYSK 590

Query: 943 PLGFNSILKLLKE 955
           P+  +    LLK+
Sbjct: 591 PIPISGYEYLLKK 603


>gi|260577135|ref|ZP_05845112.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sp. SW2]
 gi|259020609|gb|EEW23928.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sp. SW2]
          Length = 515

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 97/434 (22%), Positives = 190/434 (43%), Gaps = 10/434 (2%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           L+G+  R   +  L  ++  SA        V VI  D    + D  G A   +VL     
Sbjct: 76  LSGLAMRPQIVSVLDGVMRDSAFTGKTTACV-VIQFDDADVLLDRHGRAAQTEVLARSAE 134

Query: 598 RIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVT 655
           RI   L+  D +ARL G  F + L  +   +   +   +  ++ +I+ PI++    + VT
Sbjct: 135 RICSALRAGDTIARLEGGGFAVALSPQRRIDLETLVQLSARLQAAISPPISIDAVRLYVT 194

Query: 656 ASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLC 712
            S+GF     S   + + +L  A++A   A   G   +  F     R+      ++  L 
Sbjct: 195 CSVGFCLGVRSPEPSGAALLDAAQVAADEALRNGPGAIRGFAPDMARNRADRDALRGLLE 254

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  ++   + P +      I G EAL +W HP  G +S +EF+   EE  +I+ +  
Sbjct: 255 TALDEGQIRPYFQPQVSTDTGAISGFEALARWHHPDRGLVSPAEFLPALEEAGLIERLGE 314

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ML      ++ W       P  + +N ++ +L +  + E ++  + +   +P R+ +  
Sbjct: 315 VMLYHALAALVRWDKSGLQVP-TVGVNFSAAELRNPRMVEKLKWELDRFGLTPERLSVEI 373

Query: 833 SESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            E+VV   + +     +  L K+G  + LDDFGT  + ++ +       +K + S +T  
Sbjct: 374 LETVVAETDNDVIVHNIAALAKLGCGIDLDDFGTGHASITNIRRFTVRRLKIDRSFVTKV 433

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            E R    ++ +I+ +A+ +    +A+ +    +   L ++GC ++Q   +A P+ F + 
Sbjct: 434 DEDREQQKMVSAILSLAEQLGLETLAEGVETPGEHAMLAQLGCGHVQGFGIARPMAFEAT 493

Query: 950 LKLLKERFPLVKNT 963
              + +    V  T
Sbjct: 494 ADWIAQHRTKVATT 507


>gi|262274216|ref|ZP_06052028.1| EAL family protein [Grimontia hollisae CIP 101886]
 gi|262222026|gb|EEY73339.1| EAL family protein [Grimontia hollisae CIP 101886]
          Length = 856

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 96/465 (20%), Positives = 197/465 (42%), Gaps = 24/465 (5%)

Query: 507 GDILRYIGIANDITEQ-KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G++   + +A  + E+ ++  E  +     D ++  PN       +  ++D +       
Sbjct: 380 GNVTAVMFMALALAERFRQQREQSVYQMTHDTVSATPNVNVLSLVMDNLIDRNRA----- 434

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK------------FPDILARLS 613
            T+    ID++  +   +        +  +  R+   L                 +A ++
Sbjct: 435 FTLCCFQIDRFNSLAPYMSSQQKKVFIGEVCDRLHHSLDCDTVQVLESGDDRTHRIACIN 494

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
              FG +++S     KI     ++   +   + L +  I    +IG + +         +
Sbjct: 495 DGLFGFVVLS-TEKAKIKLLLASVLDEVDNDVELSDLSIRTQGTIGSSEFPKDGNQHDTL 553

Query: 674 LKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           L+ A  A+          +      S  R+  + +  DL  A+E  EL L + P + L  
Sbjct: 554 LRKAMQAVAETSPIEKRLNTYDSLNSFNRTLNMSLVSDLKKAIERDELELYHQPQVDLRT 613

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             I G E L++WDHPK+G +S   F+ +AEE+ +I  + L++++R         +     
Sbjct: 614 GSIHGSEVLLRWDHPKYGQVSPEVFVKLAEEVGLINDLTLWVIKRAFYQQSKLIELGFSR 673

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + IN+++ D++   L + +  +  K       + L  +ES ++ + +    ++ RL 
Sbjct: 674 --RLSINVSASDIVIPNLVDRIADIAQKYHVPTGTLSLELTESTMVSDYDSLHEVIDRLS 731

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           +  I +++DD+GT  S L+YL  +PF  +K + S +     + ++  I+R+   MAK++ 
Sbjct: 732 EYDIEVSIDDYGTGYSSLTYLSQLPFTELKIDRSFIKTLTNSPRKQNIVRATTEMAKSLG 791

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++A+ +        L R G D  Q  H + PL F+  L  LK 
Sbjct: 792 LMVVAEGVEDLETASVLKRYGVDIAQGYHYSRPLSFSQYLLYLKR 836



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 113/402 (28%), Gaps = 14/402 (3%)

Query: 3   LSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQV 62
                R  +  A   ++L    + +    + P  ++S     ++ +    +++       
Sbjct: 5   PLIPNRPLWLSAAFFVILLSTLVGARFAGLFPALVTS---PENVETSYSYFIDNTNSHVF 61

Query: 63  FTAADIDGISRRIEVSAS--SIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSP 120
               +        +      S+  +  W    + N         +      +   + +  
Sbjct: 62  SYVRESASFRTIEDPKDIPWSLGEKSYWVQLEIQNLESEYRHLALYFDTPMIDRLNIYQY 121

Query: 121 DLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEP 178
           D   R +      +      +           +         + + +  +P   I++ + 
Sbjct: 122 DESGREVKRWRLGDSLERGYLVGDMPPAIHFAMEGFERSYIYLHVYSKGIPVMPIWVMDK 181

Query: 179 NFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF 238
           + +           G    +   +A +    Y + R  + I       V +  +    GF
Sbjct: 182 HDFHTLTQLLHAIWGGFTAIMLTVAAYTFAVYAMLRERVYIVYTLYVLVSMVQLGAVHGF 241

Query: 239 LSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC 298
              L    +   + +   +        ++ L     + R H     +       + +L  
Sbjct: 242 GIYLFP--APIQVFFSNNTVGLTFGLFLLSLLYAYLYLRSHKVKSLLRQVVNYAMMVLLG 299

Query: 299 MSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV----LLIPAWILIFIWFIGL 354
           +     +    IA   L +I   +   I     K +  A     +   +WI + I  I  
Sbjct: 300 LMLISFVTPEYIAATFLIAIQPVFYLLIGILVWKRWTMAQKWSPMFTFSWIPLVISGIFP 359

Query: 355 WMAITKRLDNDI-IQPALVGGLVLIVILIGFTVIQHVLATGY 395
            + IT  ++  +  + A + G V  V+ +   + +       
Sbjct: 360 PLLITGTIEYSLASRYAFMLGNVTAVMFMALALAERFRQQRE 401


>gi|121997497|ref|YP_001002284.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Halorhodospira halophila SL1]
 gi|121588902|gb|ABM61482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Halorhodospira halophila SL1]
          Length = 646

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/576 (17%), Positives = 207/576 (35%), Gaps = 18/576 (3%)

Query: 392 ATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           A       +  + +R  LA   +  +   V   D         P  A  L      + G 
Sbjct: 73  AAEDHCHTLRWNLDRAELATTLLEHTPQAVIGLDADGQVALLNPAAAEQLQRPPERVLGQ 132

Query: 449 IRNWLPYIHI-NDRDNFRT---ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  I         R    ++           +   R+     +   ++     +  
Sbjct: 133 PA---ERILPGEALGRIRAQCPVMSGAPTQPHATPRGSLRLSTRRGEDGSLLQTRAQLVE 189

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQD--NLTGIPNRQSFLDRLTTILDLSATDD 562
           +       + +  D  +              D   LTG+P+R+S  + L           
Sbjct: 190 APLYERNVVLLLLDPGDPANGTAAEAPPPAFDREPLTGLPDRES-TEALLRWAMQRTESR 248

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                V+VI++D + +    LG  + D VL +  +R+G  L+  D+L  L   +F  IL 
Sbjct: 249 GSELAVLVIELDGFDRTEAGLGPEIADRVLHTAAQRVGGQLRHADLLGHLQRGQFTAILP 308

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA-ELAM 681
              +       A  + +S+  P+        +   IG A +      +  +L+ A   A 
Sbjct: 309 DTGSRSGALQVAQRICQSLEHPVETGSCACQLQPRIGIALFPEHSHHAVTLLEQARSAAT 368

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             A       +    +    + RV +  DL  A+E   L + Y P+  L   E+  LEAL
Sbjct: 369 RTAGDHQPGQIVEPDLGDRVARRVALIRDLRRALERRSLCVHYQPVFDLASGELTALEAL 428

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W        S  E +  AE+  ++  ++ +++E++  D+  W+ Q    P  + +N +
Sbjct: 429 LRWPEGDTSQPSIGEVIDAAEQAGLLGELDRWVVEQVLSDLAHWQSQGCCVP-RVSVNAS 487

Query: 802 SKDLLDNEL-CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            + L    L    +   + +    P  + +  SE  ++         L  +R+  + +T+
Sbjct: 488 GRTLGTGALEPAVLSKRLERLGLPPGTLDIELSERHLLDTGGAGHDGLTHIREHTLGVTI 547

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDI 918
           D FGT  + L  L  +P   +K + +L+        + A++ SI  + +     + A+ +
Sbjct: 548 DHFGTGYASLISLRDLPAGRLKVDQTLIRDLPTDPDQQALVASIARLGERFGLELAAEGV 607

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
               + + L ++G    Q  H   P    ++ + L 
Sbjct: 608 ETRQEAEHLRQLGFTEAQGYHFGYPAPAAAVSEHLA 643


>gi|152990054|ref|YP_001355776.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
 gi|151421915|dbj|BAF69419.1| signal transduction response regulator [Nitratiruptor sp. SB155-2]
          Length = 627

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 180/425 (42%), Gaps = 20/425 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                +F D LT I NR+     LT+           R  ++++D+D +KKINDV G   
Sbjct: 213 KTKKESFLDPLTQIYNRKFLRTFLTSF-------QPDRYQILMLDVDHFKKINDVYGHKA 265

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIA-MPI 645
           GD +L  +   + + ++  D L R  G  F + +  EN NS    D A  +RK I     
Sbjct: 266 GDFILQEVANLMKKNIREEDYLIRYGGEEFLLFIHRENKNSNIAIDIANRIRKIIEIKDF 325

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                 I +T S+G            E +K A+  +Y AK +G N V    VS+ + +  
Sbjct: 326 IYNNHHIKITISVGVNLHPEHFKNPIEAIKYADEMLYIAKRQGRNQVIDGTVSTQKGNFQ 385

Query: 706 MI-KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            I    +  A+E + +   Y PI  L  ++IV  EAL +        +  + F+      
Sbjct: 386 DININSVKEALEENRIICHYQPIRDLYTDKIVKFEALARMFDQNGNIVPPNRFLTPIAYT 445

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   +   ++E +   I  +        + I IN+   DLLDN +   +   I +    
Sbjct: 446 NVYNDLTKRVIEIVFNAIKKY-------KVHISINLNVSDLLDNVIYTTILNEIERNKTL 498

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +   E     + E+ +  L +++  GI + +DDFG+  S  +   ++P D +K +
Sbjct: 499 AKWLTIELLEYES-SHMEQLKQRLNKIKTYGIEVAIDDFGSGYSNFTIFQHLPIDILKID 557

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           G L+    + R    I +SI   A  +    +A+ I+ +  ++ + R+G  Y Q  ++  
Sbjct: 558 GELIKNLEQSRISYTITKSIALFANELNIKTVAEFIHNQKTLELVQRLGIRYGQGFYLGK 617

Query: 943 PLGFN 947
           P    
Sbjct: 618 PETLE 622


>gi|150398040|ref|YP_001328507.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
 gi|150029555|gb|ABR61672.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium medicae
           WSM419]
          Length = 661

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 106/443 (23%), Positives = 189/443 (42%), Gaps = 21/443 (4%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +QK++ E    +L  +  D+LTG+ NR++   +L           N    V+ ID+D +K
Sbjct: 212 QQKEASERGKALLRLSHTDSLTGLDNRRAVDQKLRDYWSDWQRGGNSFAAVL-IDVDFFK 270

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIA 636
           + ND  G   GD  LV +   + + +   D  + R  G  F I+L       + A+ A A
Sbjct: 271 RYNDFYGHQEGDRCLVLVANALKDSIARYDASIGRYGGEEF-IVLARLKTRERAAELAEA 329

Query: 637 MRK-----SIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGN 690
           +R+     ++          I VT S+G     +        ++  A+ A+Y AK  G N
Sbjct: 330 IRRSVEYLALPHEQRRDGMSI-VTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRN 388

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  +      +   I   L +A++   + LVY PI  L    +  +EAL++     
Sbjct: 389 CARLFDPNDPQTSDESENIAALLKIAIDQDLVSLVYQPIRDLSTGRVDAVEALMRLKMLD 448

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             ++  S F+ IAE    I  +  +++  +  ++++      +      I      L   
Sbjct: 449 GTSVPPSLFIPIAERTGAILDLGRWVIRVVCLELLTSEHVPVVSVNVSPI-----QLRSP 503

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                + +++ +T  + SR+    +E + M         +  L+ +GI + LDDFGT  +
Sbjct: 504 GFAASVASILGETGVAGSRLAFEITEGLEMEMHSDILRCISDLKTLGIRIWLDDFGTGFA 563

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LS+L  I FDTVK + S +      K  A+LR II + +N    I+ + +  E  +  +
Sbjct: 564 GLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIGLVRNRGHKILVEGVETEEQLTLM 623

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
            +   D++Q  HV  P    S  
Sbjct: 624 RQFRIDHVQGFHVGRPAPARSFE 646


>gi|303326197|ref|ZP_07356640.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Desulfovibrio sp. 3_1_syn3]
 gi|302864113|gb|EFL87044.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Desulfovibrio sp. 3_1_syn3]
          Length = 631

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 177/429 (41%), Gaps = 13/429 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A +D LTG  N + F      ++    T +     V   D   +K INDV G   G  V
Sbjct: 190 MADRDPLTGAYNLERFKREARELI---GTGEATHYAVAYADFADFKYINDVFGYEYGSAV 246

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L      IG+ LK  +I  R+S + F  IL    +  ++      +  +I   ++    +
Sbjct: 247 LREYAHIIGKELKGNEIFGRVSADNFV-ILRRYEDKEEVLARQQTVDAAITDFMHKSRYK 305

Query: 652 ITVTASIGFASWTSSKIT--SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--- 706
            T+    G      +        +L  A  A    K  G     +F   S R + +    
Sbjct: 306 QTLPVCCGICCLEDAPGDLVIDNILDRANFARKTVK-NGAYAKYAFYDESIRDNLLEEKG 364

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +   +  A+ N E  + Y P + L   +I   EAL++W       I   +F+ I E+  +
Sbjct: 365 LVSQMQEALNNGEFIVYYQPKVALRTGDIACAEALVRWKKSDGQIIPPDKFIPIFEKNHL 424

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++ E + R +    D+   P + + +NI+     + +      A+ ++      
Sbjct: 425 IAELDQYVFESVCRSLRRRLDEE-RPVLPVSVNISRLQFYEEDFVAAYAAVKNRYRIPNG 483

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG- 885
            + L F+ES+   N E    ++ +L++ G S ++DDFG   S LS L  +P DT+K +  
Sbjct: 484 LLDLEFTESIACDNFELMTEIVKKLKQEGFSCSIDDFGKGYSSLSLLKSLPIDTLKIDRL 543

Query: 886 SLMTGSTEKRIAI-LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             + G  ++R AI + SII + + +    +A+ +     +  L  + CD +Q      P+
Sbjct: 544 FFIDGENKERDAILVESIIGLVRKLHIQTVAEGVESPDQVAFLKSVHCDLVQGYVFFRPM 603

Query: 945 GFNSILKLL 953
                   +
Sbjct: 604 PEQEYEAAI 612


>gi|225419783|ref|ZP_03762086.1| hypothetical protein CLOSTASPAR_06121 [Clostridium asparagiforme
           DSM 15981]
 gi|225041575|gb|EEG51821.1| hypothetical protein CLOSTASPAR_06121 [Clostridium asparagiforme
           DSM 15981]
          Length = 649

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 206/550 (37%), Gaps = 35/550 (6%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQ 480
           D+  +    + ++    G  S  ++  I  W   I    DR  ++  L   + +++    
Sbjct: 123 DLQNNLYYISDNMRDDFGFPSNVVYDLIEKWGAMIGDPQDRILYQQDLRQMLEHKKDIHS 182

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             +RV        W+  R     + +    L + G  +      +       +A     T
Sbjct: 183 LRYRVTDRRGYSVWVHCRGIIRWSEDRTTPLFFSGCVS------RLESNFAMDAT----T 232

Query: 540 GIPNRQSFLDR--LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           G        +R  L  ++ LSA +      V+   ++ +  IN+  G   GD +L  +  
Sbjct: 233 G-----FLRERAALNELVTLSARNS--PALVISFGLNHFTYINESKGRTEGDRILRDIAN 285

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + E L       RL G RF  I    N        A  +R+ I +  +        TAS
Sbjct: 286 TLEEELGTMFTFYRLDGIRFMAISRRTNGWDPGEAVAG-IRRIINLVYSRERITAKRTAS 344

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF------RVSSFRSDRVMIKEDL 711
            G  S+        E+L+NA   +  AK         F      R     +  +++ E +
Sbjct: 345 FGVQSFPQGGRLPQEILENAITLINVAKLNLDLEYSEFSSDLIARQRERSNMALVLSESV 404

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
               E     +V  PI+     EI+G E L++W +    ++S + F+ + EE  MIK + 
Sbjct: 405 EKGCE--GFRVVVQPIVSRDSGEIIGGETLLRWRYMD-QDVSPAVFIPLLEETQMIKVVG 461

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +  E+  R     R     P   +  N++   +LD+     MQ  + ++      + L 
Sbjct: 462 KWGFEQAVRICS--RVIPCQPDFLLSFNVSYLQVLDDTFLPFMQQTLKESGLPGRHLMLE 519

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+     P+R    + +  ++GI   LDDFG   S L  L   P + +K + +LM   
Sbjct: 520 LTETHFDEMPKRLHEFVNQCHEMGIKFALDDFGNGFSSLQMLFKYPVNVIKLDRTLMNQI 579

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + + +  + SI+         +  + +  E ++  + +  CD IQ  +   P+     
Sbjct: 580 THSPENLDFIMSIVYACHRSGKRVCVEGVETEDELAAVRQTDCDMIQGFYFYRPIEAGEF 639

Query: 950 LKLLKERFPL 959
            + +    P+
Sbjct: 640 YRCIGADRPV 649


>gi|289663160|ref|ZP_06484741.1| phosphodiesterase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 349

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 152/337 (45%), Gaps = 6/337 (1%)

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            ++  +   A  +   +  P+ L +  I + ASIG A           +L+ A++A    
Sbjct: 3   ADAASVQQNAQFLLLQLRRPLVLPQARIQLEASIGIALIPDHGADPDTLLRRADIARRQV 62

Query: 685 KHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
                     +R         R+ +  DL  A+  +EL L + P I L  + +  +E L+
Sbjct: 63  GTTSAIGASVYRLGQDEQHLRRLRLTGDLRQAIGGNELTLRFQPKICLRSDRVEQVEVLV 122

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G I   EF+ +AE   +I ++  F+L++  R    WR+Q       + IN+++
Sbjct: 123 RWHHPVLGPIGPDEFVPLAEHSGVIHSLTRFVLDQALRCQAKWREQGLELG--MAINLSA 180

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            DL D  L + ++  +           L  +ES +M + E +  +L +LR +G+ L++DD
Sbjct: 181 LDLSDPGLPDFVRGRLEYHAVPAQSFTLELTESALMRDVEFALHMLHQLRSVGVRLSIDD 240

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+ L  +P + +K + S +    E      I+RS I +  N+  ++IA+ +  
Sbjct: 241 FGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRSTIDLGHNLGLSVIAEGVEN 300

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              +  L   GCD +Q    + PL    ++     + 
Sbjct: 301 ATALALLRGYGCDMVQGYLYSPPLEEAPMVAWCMRQL 337


>gi|304438033|ref|ZP_07397977.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368987|gb|EFM22668.1| conserved hypothetical protein [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 719

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 174/430 (40%), Gaps = 19/430 (4%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +TG+ N   F+   +  L    T      T +  DI+ +K  N       G+  L  + 
Sbjct: 16  PVTGLLNMMQFMRHASLHLQDPMTRP---LTFIYFDIENFKSFNQRYSFQQGNRFLRYVA 72

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + E     D+L+R + + F +    E    ++        + I   + + +  + +  
Sbjct: 73  DLLRETF-PGDLLSRFNDDHFVVATPIEQPDRQV--------QFIHDHVRIYDTHLPLEL 123

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
             G     +     + ++  A++A    K+        F  S          I  +   A
Sbjct: 124 KAGIYRPDADVTDVARIVDRAKIACNTIKNTYDLVWAVFDPSMEEELNFRSYIVRNFSKA 183

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +    + + Y P IR M  EI G EAL +W  P +G IS   F+ + E+  +   ++L +
Sbjct: 184 IMGGHIMVYYQPEIRTMTREICGFEALARWHDPVYGVISPGVFVPVLEDAHLSPQLDLCI 243

Query: 775 LERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++++   I+  +       +  + +N++  D    ++ + ++ +  +   +   + +  +
Sbjct: 244 IDQVCASIVQIQRDIPDWSLLRVSVNLSRADFRLMDMVQAVEDVRLRHGVARKMLNIEVT 303

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
           E V   +    +  + R R +G  + +DDFG+  S L+ +    FD +K + + +    +
Sbjct: 304 EGVQGDDETFLQGEIARFRALGYEVWMDDFGSGYSSLNNIKDYVFDVLKIDMNFLRSFET 363

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             K   ++RSI+ MAK +    +A+ +  E   + L  +GC+ +Q    + P+ +   + 
Sbjct: 364 NPKSAIVIRSIVNMAKELGMHTLAEGVETEAQFEFLREIGCEKVQGYLFSPPIPYAEAIA 423

Query: 952 LLKERFPLVK 961
                 P  +
Sbjct: 424 YC--HGPTAR 431


>gi|319789377|ref|YP_004151010.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Thermovibrio ammonificans HB-1]
 gi|317113879|gb|ADU96369.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Thermovibrio ammonificans HB-1]
          Length = 797

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 207/462 (44%), Gaps = 34/462 (7%)

Query: 501 PMSNSNGDILRYIGIAND-----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            + +  G++ + +  A +     + E +++   +    + D LT +PNR+  ++ +  + 
Sbjct: 358 VVPDETGEVAKALNFAVNRVNETVRELRRTQNRLKKLLYYDTLTNLPNREKLVEEVKKL- 416

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                    +P + +ID+  ++ IN++ G   GD++L  L  R+  L      + RL  +
Sbjct: 417 --------RKPVICLIDVTNFRFINEIYGEKCGDEILKELAYRLSSLFPGR--VYRLYSD 466

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L  E  S K      A+    A P +    E++V+ + G            +++ 
Sbjct: 467 DFALMLEGEEFSEK--RLREALGSIEAKPFHCNGLEVSVSLTAGVCIGREGS---EKLIN 521

Query: 676 NAELAMYHAKHRGGNH---VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           +AE+A+  A+ +        ES          + + ++L  A++ + + L+Y PI+    
Sbjct: 522 HAEVALNEAREQNRKVVILKESELPKQTYRRNLELLKELQSALKENRILLLYQPILNNST 581

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           + +   EAL++        +  +EF+ IA    +   ++  ++ R   D           
Sbjct: 582 DRVERFEALVRIKTKNGEILRPNEFLPIAVRAKLYHELSRQVITRALADFREL------- 634

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           P  + IN+   D+   E    +   +S+   +P R+     ES  + + ++ R  + +++
Sbjct: 635 PFGVSINLGYPDITSKETKATITETLSRFP-NPHRVTFEILESYSIESYQQVREFIKKVK 693

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
           K+G S+ +DDFG   S L +L  +  D +K +GS+++     ++   +  +I+ +A+ ++
Sbjct: 694 KLGCSIAVDDFGAGFSNLKHLIELQVDYLKIDGSIISRLLKDKEAQVLCEAIVSLAQELK 753

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
              +A+ +  E  ++++  +  DY Q + +  P+    + KL
Sbjct: 754 VKTVAEFVSSEELLRKVKELKVDYSQGNFIGKPMEIEKVKKL 795


>gi|255020479|ref|ZP_05292544.1| sensory box protein [Acidithiobacillus caldus ATCC 51756]
 gi|254970089|gb|EET27586.1| sensory box protein [Acidithiobacillus caldus ATCC 51756]
          Length = 1035

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/458 (20%), Positives = 194/458 (42%), Gaps = 12/458 (2%)

Query: 508 DILRYIGIANDITEQKKSLEGIL----CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            I R +G   D  + ++ +E         A  D LTG+PNR + LDR+   ++ +   D 
Sbjct: 478 RISRLLGFGLDELDLRERIEQERKVQSWMARHDALTGLPNRVALLDRIPEAMERALRGDR 537

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   + ++D+D +K +ND  G A GD +L +L  R+  +L+  D +AR+ G+ F ++L  
Sbjct: 538 L-LAICMLDLDDFKPVNDRYGHAAGDALLRTLALRLQGVLRKTDFIARMGGDEFALLLEG 596

Query: 624 ENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            +    +      + +++  P  L    E     S+G + +      + ++L++A+ AMY
Sbjct: 597 LSRMDDLEQLLERIDRALQTPTLLPGGIEAHTGGSLGVSIFPFDDGDAEQLLRHADHAMY 656

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            AK         + +   R +           + +  L   + PII L   E+ G EAL 
Sbjct: 657 RAKVGKHQRSHFWEMYRGREEGREEPAPYATLLHSGALVPYFQPIIALASGEVAGFEALA 716

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +        ++ + F+         + +   ML       +    +     + + +NI  
Sbjct: 717 RLQQ-GGLLLTPAHFLTQLSRPDQ-RELTRQMLSEALALAVEGGRRGRH--LEVSVNIGP 772

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             LLD    + +  ++ ++  +P+++ L   ES    N   +R  +  +R++G+ + LDD
Sbjct: 773 DLLLDASFIDLVHRVVRQSGVAPAQLTLEILESGEFLNLALARDRIDEIRRLGVRIALDD 832

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
            G+  + L  L  I  D VK + S +       + +  + ++  +A+ I    + + +  
Sbjct: 833 VGSAYASLLRLREIAVDEVKLDQSFVREIGKRPEDLNFVLNVGGLAQAIGARYVVEGVED 892

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
              +  L  +   Y+Q   +A P+    +   +    P
Sbjct: 893 LSILDALGVLAIPYVQGYSIARPMPAQEVWSWIAHYRP 930


>gi|163853206|ref|YP_001641249.1| EAL domain-containing protein [Methylobacterium extorquens PA1]
 gi|163664811|gb|ABY32178.1| EAL domain protein [Methylobacterium extorquens PA1]
          Length = 598

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 201/434 (46%), Gaps = 17/434 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN---DVLGIAVGDDVL 592
           D L+G+P+R  FLD L    DL+A   +     ++ID+ + ++++    V+G    DD++
Sbjct: 167 DPLSGLPSRNQFLDDLA---DLAAEHPDEARIAVLIDLGRPEQVSAYSRVMGPGRVDDLV 223

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLERE 651
               R +  L+     L   +  +F  +          +   A   R++    I      
Sbjct: 224 REAARELRRLIGPGRKLYHTAATQFTFLAPRGAQQDDYVRLLADEHRQARQRSIT----G 279

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKED 710
           + +T++IG + +        + L++   A+  A+           V+     R   + +D
Sbjct: 280 MLLTSAIGVSVFKPCTTAPQDALRSLYSAVQDARSLHDLISVYSSVADEAYQRRYQLLQD 339

Query: 711 LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
              A   + +L LV+ P I L     +G EAL++WDHP+ G +S  EF+ + E     +A
Sbjct: 340 FGPALGADDQLRLVFQPRIDLSTGRCIGAEALLRWDHPELGPVSPGEFVPVIELSPHAQA 399

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  F+LER       W+D  +   + + +NI++ +L++    + ++A + +   +P +++
Sbjct: 400 MTAFVLERALAQARRWQDAGH--SLVMSVNISAANLIEAGFGQSVEAGLRRHGLAPGQLE 457

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES +M N E++R  L  L   GI L +DDFGT  S L+YL  IP   VK + S + 
Sbjct: 458 LEVTESAIMQNAEQARRQLDLLAAAGIRLAIDDFGTGYSSLAYLQDIPAHVVKIDQSFVR 517

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E+  +++ S+I ++ ++   ++A+ I       ++  M CD  Q    A PL   
Sbjct: 518 KLADGERERSLVHSMIHLSHDLGYRVVAEGIETAEAADQVRAMACDEAQGYLFARPLEIG 577

Query: 948 SILKLLKERFPLVK 961
           +    L+E     +
Sbjct: 578 TFETWLREHEQDAR 591


>gi|297568746|ref|YP_003690090.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924661|gb|ADH85471.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 1018

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 98/563 (17%), Positives = 205/563 (36%), Gaps = 14/563 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            Q +    ER  + +   G+ V   +         P    + G     + G  +      
Sbjct: 439 EQALAEAKERAMVTLAAIGEGVITTNNRGVVDYLNPAAERLTGWTREDVMGMELDQVFDL 498

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDILRYI 513
                R      ++  +   R  +    R  +   D++   + I   P+ +    I+  +
Sbjct: 499 RDEESRQPLSNPVERALRLDR-TVNITRRALLVTNDSREFSLQITATPIHDRQQKIIGAV 557

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +  D+++ + +   +   A  D LTG+ NR+ F   L   L  ++ +      +  +D+
Sbjct: 558 MVFRDVSKIRVAERRMAREAKYDELTGLRNRREFNALLNQALAAASEEGKEHV-LGYLDL 616

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           DK+K IND  G   GD+VL  +   +   L+  DILARL G+ F I+L S          
Sbjct: 617 DKFKIINDTCGHDAGDEVLKQVAELMQAQLRNTDILARLGGDEFAILLSSCPMEAGHKIA 676

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
               R           R   ++ SIG     +   T  ++LK A+ A Y AK +G N ++
Sbjct: 677 EQIRRALEEYRFTWHGRAFELSVSIGLVQLQADSGTLDDVLKAADTACYQAKEQGRNRIQ 736

Query: 694 SFRVSSFRSD--RVMIKEDLCLAVENSELYLV--YHPIIRLMDEEIVGLEALIQWDHPKW 749
            ++  + +      + ++ +   +  +   L      I+          E  +     + 
Sbjct: 737 QYQPQASQGSAAGALWQDRIRQGIAENRFTLWARRSRILSSDQRLPHYYELSLTLRDDQG 796

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             +  S F+ +AE   +I  +  + +  +   + +  D   +  + +     +  +   +
Sbjct: 797 HYLPESSFLPMAERHQLIMDVEKWKISTLMARVATTCDPNKVYALKLA--TMALQV-SEQ 853

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           LC  +     +   +   I    +E+ +  N  R + L   L+K G  LT+D FG     
Sbjct: 854 LCPFILQQAERCGLNSKNIAFEINETDLTANFTRVKRLFKALKKAGFRLTIDRFGYNRGS 913

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             +L  +  D +K +  +            +  ++  + + +   +IA  +     +  +
Sbjct: 914 FGHLEELAVDFLKLDAGITNSLLENHVDYILAETVSRVGQLMRLPVIATGVDDASLLAAM 973

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
             M  DY+    +        I+
Sbjct: 974 EEMKIDYVLGEVIDPGRPLEEII 996



 Score = 58.8 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 416 DIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYI---HINDRDNFRTILDS 470
           + V   D+ R    V     +  I G A   + G    +L      H    +  R  +  
Sbjct: 208 EGVLISDVARGNLIVYANAAVERITGHAGEEILGRKPRFLHQTVSAHPAGAEELRQAMAE 267

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                R         +  D    W  I + P+ N        + +  D++EQ + ++ + 
Sbjct: 268 -----RRSCHVILHQQRPDGTLFWHEISLTPLVNDQQHATHLLFLLRDVSEQFEFIQELR 322

Query: 531 CN 532
           C 
Sbjct: 323 CR 324



 Score = 51.9 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 8/148 (5%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
                 +++ V     F Q +     R+   +  +   +   D      T  P +  + G
Sbjct: 301 ATHLLFLLRDVSEQFEFIQELRCREGRERTVIEQAPIAICIVDQEHRIRTVNPMLERMFG 360

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +  +       L  +      +           R G    EF ++    +   ++   
Sbjct: 361 YDAEQLLQNS---LFTLLPEVVWHDVVPEPPAYERRGG----EFMLQNRRGEKLTVLASA 413

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLE 527
             +   +   L  +    DIT +K++ +
Sbjct: 414 VALKEPDDKPLTAL-FLTDITGRKRTEQ 440



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           +   +     V D    +P    + GLA+  + G   +    +          +++    
Sbjct: 87  AEIAIMLLSPVGDITYASPAACRLFGLAADELVGKPAS--RLLPP---WRQGELVEELAS 141

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL-RYIGIANDITEQKKSL 526
           +  G  + +  ++   N+   + +  RP+++  G      +    DIT+Q++  
Sbjct: 142 HHPGEWETQRLIQH--NKLIDVHLISRPLADDTGQPTGGRLWCLWDITQQRRQE 193


>gi|157164804|ref|YP_001467535.1| molybdenum-pterin binding protein [Campylobacter concisus 13826]
 gi|112801120|gb|EAT98464.1| putative pas:ggdef [Campylobacter concisus 13826]
          Length = 789

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 140/808 (17%), Positives = 295/808 (36%), Gaps = 94/808 (11%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
                   G+ +       + ++     +L            YIS++   L  +  L + 
Sbjct: 27  LFIFSQFAGILNYKIFENLLIFLGFGLVVL----------GIYISMNRSKLKAMHWLAAC 76

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
             +      +   S +    L      +  H       F  +A + I F + F       
Sbjct: 77  FGVFIWTIIDAIRSVNEDFLLRSKEQISYLHFFDLLPMFLLLAAVGIFFVVKFIASDKKI 136

Query: 309 SIARITLASIVLYYTYFIIYHGMKG------YERAVLLIPAWILIFIWFIGLWMAITKRL 362
            +   +   ++L +T      G  G      + ++   + A I IF+    L++A+++  
Sbjct: 137 LVLADSFNVLLLVFTLAYCIVGDMGDFNILIHPKSPSELAASIAIFVNLSILFIALSEIF 196

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
           +++ +     G  ++I   I   +  +V      ++G                      D
Sbjct: 197 NSNHLYIRHSGFFLIIASAIFTLLNLYVFYNELINKG---------------------HD 235

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR-----DNFRTILDSFVGYRRG 477
                +   P    +LG         +R     I   D           I+ + +   + 
Sbjct: 236 FTLHSIYLVPFFLLMLG------AFYLRGDNKRISAADVGIKTTSKLVPIISAALILIKT 289

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA---- 533
            L            +  ++I    +    G ++ Y     D +E+  + E  L +A    
Sbjct: 290 DLS----------SYVDLLIIFVVV---AGAVISYFMKVLDQSEEIYNAEQNLHDAKNKE 336

Query: 534 -------------------FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
                               +D LT + NR S L+ L  +   S   +     V  I+I 
Sbjct: 337 KHLKTNELEMINLSLEGVSEKDYLTSLGNRDSLLNELKGMC--SVLGEKQEIAVYYINIS 394

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADF 633
           ++K IN   G  VGD +L ++ +RI E     ++ AR+  + F ++  + EN+  K    
Sbjct: 395 RFKNINTSYGHEVGDKILKAIAKRIREACNRQEVTARIGADEFIVLSKMEENSHTKRMKL 454

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHV 692
            + +R +I  P+ + +    + + +G    T         ++K A++AMY+AK     + 
Sbjct: 455 GMELRDTIEKPLQIDKYHFAIKSVVGIHVVTRDNISDPRNIIKKADMAMYYAKQNPAKNP 514

Query: 693 ESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             +        +    I+  L  A    +  + + PI  + + +I+ +EAL++W   ++G
Sbjct: 515 MVYNNEIDSEIQQSSNIEIALKKANLQEDFEVYFQPIYDIKNLKIICVEALLRWQSKEYG 574

Query: 751 NISSSEFMLIAE-ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
              + EFM IA     ++  I    + +     + W+++    P  I IN+A       +
Sbjct: 575 QKEAGEFMDIASLNSDILNDICTLAVSKTVEQAVRWQNKKLKMP-KISINVAQIQSTSEK 633

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
                   ++    +P + +L FSES+   + E    +   L K  I + +DDFG+  + 
Sbjct: 634 FVNEFMLTLNSHHLNPKQFELEFSESIWQNDNETLDKIFSLLEKNSIDVCIDDFGSGYTS 693

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             Y+     D +K     +      +K + ++ +II +AK+++  + AK +      + L
Sbjct: 694 FVYIRKYKIDRIKIANDFVAQSVINKKDMQVVAAIINIAKSMKLKVTAKGVESHEIKELL 753

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
             + C+ +Q   ++ P+        L++
Sbjct: 754 KELNCNEMQGYFLSRPMSAEEFENSLRQ 781


>gi|254563119|ref|YP_003070214.1| phosphodiesterase [Methylobacterium extorquens DM4]
 gi|254270397|emb|CAX26395.1| Putative phosphodiesterase [Methylobacterium extorquens DM4]
          Length = 598

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 107/434 (24%), Positives = 200/434 (46%), Gaps = 17/434 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN---DVLGIAVGDDVL 592
           D L+G+P+R  FLD L    DL+A   N     ++ID+ + ++++    V+G    DD++
Sbjct: 167 DPLSGLPSRNQFLDDLA---DLAAEHPNEARIAVLIDLGRPEQVSAYSRVMGPGRVDDLV 223

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLERE 651
               R +  L+     L   +  +F  +          +   A   R++    I      
Sbjct: 224 REAARELRRLIGPGRKLYHTAATQFTFLAPRGAQQDDYVRLLADEHRQARQRSIT----G 279

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKED 710
           + +T++IG + +        + L++   A+  A+           V+     R   + +D
Sbjct: 280 MLLTSAIGVSVFKPCTTAPQDALRSLYSAVQDARSLHDLISVYSSVADEAYQRRYQLLQD 339

Query: 711 LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
              A   + +L LV+ P I L     +G EAL++WDHP+ G +S  EF+ + E     +A
Sbjct: 340 FGPALRADDQLRLVFQPRIDLSTGRCIGAEALLRWDHPELGPVSPGEFVPVIELSPHAQA 399

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  F+LER       W+D  +   + + +NI++ +L++    + ++A + +   +P +++
Sbjct: 400 MTAFVLERALAQARCWQDAGH--SLVMSVNISAANLIEAGFGQSVEAGLRRHGLAPGQLE 457

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES +M N E++R  L  L   GI L +DDFGT  S L+YL  IP   VK + S + 
Sbjct: 458 LEVTESAIMQNAEQARRQLDLLAAAGIRLAIDDFGTGYSSLAYLQDIPAHVVKIDQSFVR 517

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E+  +++ S+I ++ ++   ++A+ I       ++  M CD  Q    A PL   
Sbjct: 518 KLADGERERSLVHSMIHLSHDLGYRVVAEGIETAEAADQVRAMACDEAQGYLFARPLEIG 577

Query: 948 SILKLLKERFPLVK 961
                L+E     +
Sbjct: 578 KFETWLREHEQDAR 591


>gi|218665621|ref|YP_002426126.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218517834|gb|ACK78420.1| sensory box-containing diguanylate cyclase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 1057

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 183/420 (43%), Gaps = 13/420 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +   E     A  D LTG+PNR+    ++   +  +   + L   V ++D+D +K +N
Sbjct: 585 HLRLLQEQEAKIARTDLLTGLPNRRFLEIQMEQAIARAERHNQL-LAVCMLDLDGFKPVN 643

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD+VLV+L +R+ E L+  D +ARL G+ F +++    +   +A+    +  +
Sbjct: 644 DTYGHGAGDEVLVALGKRLSEALRKSDFVARLGGDEFVLLVEDLEDLDDLANIMKKIEDT 703

Query: 641 IAMPINL-LEREITVTASIGFASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           I  PI L   + + + AS+G A +      T  ++L+ A+ AMY +K       E F V 
Sbjct: 704 ITAPIPLSNGKSVQIGASMGVALYPFGDTDTGDKLLRLADQAMYESK-ANKAARERFWVL 762

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                +          ++   L + Y P++      +VG+EAL +         + +EF+
Sbjct: 763 FGEEVQKEKCTPGQQLLDAGALEVWYQPVLDSRTRRVVGVEALARLRDTDGTLWTPAEFL 822

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
               ++  +  +   +L +   D+           +++ +N+  + +        +Q +I
Sbjct: 823 PQL-QIGNLSDLTGKVLAQSLADLSLLDAHG--WSLWVSVNLDPRSV-SEGCITCLQEMI 878

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +++   PSRI L   E       +++   L  ++ +G+ L LDD G+  S L  +  +P 
Sbjct: 879 AQSTVDPSRITLEILEGDDFLEQQKALDHLLEIKALGVRLALDDVGSAYSSLLRIKDLPI 938

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +       + +  + +I  +A  +   ++ + +  E  +  +        Q
Sbjct: 939 DEIKLDQSFIRSLEQRPQDLHFVGTIQDLAAGMGVDLVVEGVETEDILDAII---VTGAQ 995



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 6/151 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           T++Q +            D +R       V    D V   D  R  +        + G A
Sbjct: 157 TILQQLSLQISQGLERLQDVQRLRFLRASVEALEDGVTIADPQRHLIYVNQAFLKLTGYA 216

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              + G    +L              +   +   +     +   +  D    W  + I P
Sbjct: 217 MKEVLGRDCKFLQA--PQTDAQTVRQIAIALAQEQ-SYTGDILNQRNDGTLFWNRLHIDP 273

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           + N  G +  +IG+  DIT+++++   I   
Sbjct: 274 VLNDQGALTGFIGLQRDITQERENRNLIQTL 304


>gi|227823533|ref|YP_002827506.1| putative transmembrane GGDEF/EAL domain protein [Sinorhizobium
           fredii NGR234]
 gi|227342535|gb|ACP26753.1| putative transmembrane GGDEF/EAL domain protein [Sinorhizobium
           fredii NGR234]
          Length = 669

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 181/441 (41%), Gaps = 17/441 (3%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +QK++ E    +L  +  D+LTG+ NR++   +L                  +ID+D +K
Sbjct: 219 QQKEASERGRALLRLSNTDSLTGLDNRRAVDQKLRDYWSDWQK-KGTSFAAFLIDVDFFK 277

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIA 636
           K ND  G   GD  LV +   + + ++     + R  G  F ++   E +          
Sbjct: 278 KYNDFYGHQEGDRCLVLVASALKDSIEPYNGSIGRYGGEEFIVLARMETSEQAAELAETI 337

Query: 637 MRKSIAMPINLLERE---ITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHV 692
                 + +   +R      VT S+G A   +        ++  A+ A+Y AK  G N  
Sbjct: 338 RCGVENLALEHGQRRDGMSIVTVSVGAAFSRNQTGSKLERLIHEADRALYGAKASGRNCA 397

Query: 693 ESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F  +      +   I   L +AV+   + LVY PI  +    +  +EAL++       
Sbjct: 398 RLFDPNDPHSNDESENIAALLKIAVDQDLVSLVYQPIRNVASGRVDAVEALMRLRMLDGT 457

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
           ++  S F+ IAE    I  +  + +  + R++++      +      I      L     
Sbjct: 458 SVPPSLFIPIAERTGAILDLGRWAIRTVCRELLADEHVPVVSVNVSPI-----QLKSPGF 512

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + A++ +T  +  R+ L  +E + M         +  L+ +G+ + LDDFGT  + L
Sbjct: 513 AASVAAILGETGVAGGRLALEITEGLEMEMHSDILRCISDLKTLGVRIWLDDFGTGFAGL 572

Query: 871 SYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           S+L  I FDTVK + S +      +  A+L+ II + +N    I+ + +  E  +  + +
Sbjct: 573 SWLRLIDFDTVKIDRSFLHDCDTPRGKAMLQDIIGLVRNRGHMILVEGVETEEQLALMRQ 632

Query: 930 MGCDYIQDSHVASPLGFNSIL 950
              D +Q  HV  P    +  
Sbjct: 633 FRIDQVQGFHVGRPAPAQTFR 653


>gi|304312810|ref|YP_003812408.1| hypothetical protein HDN1F_31900 [gamma proteobacterium HdN1]
 gi|301798543|emb|CBL46773.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 915

 Score =  317 bits (813), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 190/457 (41%), Gaps = 18/457 (3%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K+     +  A  D +T  PN    L  L           +L   ++++ I + + I 
Sbjct: 449 QLKEIKLERMDAAMHDPITHYPNDSLLLAFLQE--QTQNEGKSLPFGLVLLYIPQVRDIA 506

Query: 581 DVLGIAVGDDVLVSLTRRI--------GELLKFPDILARLSGNRF---GIILISENNSLK 629
             LG  + +    + T+ +                  A L    F     +    +N  +
Sbjct: 507 TSLGREIAEPFFRTFTQSLNGVLKASDKAFCIEEKTDAYLVVLEFGMVAFVCHGADNIEE 566

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
              F   ++       ++    ++     G A + S     +++L++A  A+ +A+  G 
Sbjct: 567 HKGFIEGIQNHFEASADIGNLSVSPIFFFGIAHYPSHATQPAQLLQHATAALEYAQRNGK 626

Query: 690 NH-VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              V    + ++   R++I   L  A++ +EL L   P +   D  +VG E L++W+  K
Sbjct: 627 QISVYHSGIDTYGQRRLIIMAALSHAIKQTELELFAQPQVNSTDLSLVGTELLLRWNSAK 686

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            GN+ + EF+ IAE   M+K I  F++ R    +          PI + +N++ ++L++ 
Sbjct: 687 LGNVPTQEFIEIAENAGMMKHITRFVVSRGMLFLKQLHQ--RHLPITVSVNLSIQNLVEP 744

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +             + L  +E+    N  R    L RL + G S+ LDDFGT  S
Sbjct: 745 DFVTYIIDSAKALGVDLHYLVLEVTETSASENIGRVIDNLKRLAQAGCSIALDDFGTGYS 804

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +P   +K + S ++          I+ + + +AK ++   +A+ +  E  +  
Sbjct: 805 SLEYLSRLPIHELKIDRSFISRMGTSDSHLRIVENTLTLAKALQIQTVAEGVEDETMLST 864

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +T++GC+ +Q  H+  P+   +     ++    ++NT
Sbjct: 865 ITQLGCNRVQGYHIGKPMPLPAFHHWAQKYCSQLQNT 901



 Score =  167 bits (424), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 44/375 (11%), Positives = 110/375 (29%), Gaps = 6/375 (1%)

Query: 36  NISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRI--EVSASSIRHRGDWAVFAL 93
            I++      L S      ++ + +   T        +    EV      H   W    L
Sbjct: 69  VINTPIENQSLNSGVSYISDKHQKWSFETIQQASNWIKNPADEVLNFGFTHDPYWLHVPL 128

Query: 94  ANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITI 153
              + S  +  +V+P+  L        D   + +      E +   R  +  S +F +  
Sbjct: 129 DLANPSHQQLNLVIPYPLLESVKVAIFDQDKKLVFQSNLVEQYKSARPEDFQSLLFSLPK 188

Query: 154 NPGAVVTFIMEIST--PNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYM 211
                V   + + +       + +W   + +   +   L  G+  GV   L ++    + 
Sbjct: 189 ALEGPVDLYLRVESTTSMQIPLEIWSDAYTQQRHSQGMLLWGLYFGVIVGLTLYNGFLFF 248

Query: 212 VNRSSMLIPTFAMAWVVLGY-ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLF 270
             R               G  + +     S    + +             ++   + F  
Sbjct: 249 SVRDITYCYYSLYLISTTGVMLCLSGLGNSYFWTMETTLSRHALTFFTGTMTLLALAFAR 308

Query: 271 MYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG 330
            +L  +R+         + +     L  M+++ P++ A +A    +  +       ++  
Sbjct: 309 AFLQGSRFPGLFNLALKASVVVCLALIVMAWFNPVLGAPLAAWNASLFMFLILAAGVFSL 368

Query: 331 MKGYERAVLLIPAWILIFIWFIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQH 389
            +G   A   + A+++         +     L  + +   ++  G  L  IL+   +   
Sbjct: 369 SRGLVIARYFVLAFVVFVAGTATYLLNTFGLLPVSTLTTHSIQLGSALEAILLSLALAHR 428

Query: 390 VLATGYFSQGIFSDG 404
           +      +       
Sbjct: 429 IKEDRNATILALQQK 443


>gi|163783661|ref|ZP_02178649.1| Predicted signal transduction protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159881066|gb|EDP74582.1| Predicted signal transduction protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 869

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 177/424 (41%), Gaps = 19/424 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+ NR+     +     L    +    +++++DID +K IND  G  V
Sbjct: 449 RLTHMATTDPLTGVSNRRVLEHDIAKFGRLVKRYNK-SMSLIMVDIDNFKGINDTYGHQV 507

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PIN 646
           GD VL  + + I E ++  D + R  G  F ++   E + L   + A  +R+ I      
Sbjct: 508 GDVVLKKVAKLIEESVRETDTVYRYGGEEFAVLCP-ETDKLGAYELAERIREKIRETKFW 566

Query: 647 LL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           +   R I +T S+G AS         E+L  A++++Y AK  G +       SS +   V
Sbjct: 567 IDTSRVIYITVSLGVASVPEDTDNPDEILAIADISLYRAKSEGKDRTAILTDSSDKRLFV 626

Query: 706 M---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                +++L   + + +      PI  L   ++ G E L +         +  +F+   E
Sbjct: 627 ERFKREKELRTYIRSGKTLHHLQPIYDLRRGQVFGYELLFRVVDGDR-LYTMGDFITHVE 685

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +L +I+ I+   + R+ + +        +      IN++ + L    +   +  LI +  
Sbjct: 686 DLGIIEDIDRLTVSRLLKLLSYEE----LSNYCFFINVSPRSLDRGRILSEL-NLIPRHQ 740

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI--PFDT 880
               R+ +  +E     + E +   +  L+ +   + LDDFG+  S +S L Y     D 
Sbjct: 741 RP--RVYVEITERETFMDTEEALRHIEELKNMNFRIVLDDFGSGFSSISQLRYFVKYLDL 798

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GS +          AI+ S+  MA      ++A+ I  E ++  +  +G  + Q  
Sbjct: 799 IKIDGSFVKRIHRDPYNRAIVESVKIMADRFSIDLVAEFIEREEELNVVKVIGIRFGQGF 858

Query: 939 HVAS 942
               
Sbjct: 859 FFGK 862


>gi|109898563|ref|YP_661818.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
 gi|109700844|gb|ABG40764.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas atlantica
           T6c]
          Length = 763

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 131/770 (17%), Positives = 269/770 (34%), Gaps = 49/770 (6%)

Query: 210 YMVNRSSMLIPTFAMAW--VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA-LSSSLI 266
           Y   +          AW    L  + +    L  +  + S    +    + +  +S +  
Sbjct: 14  YFYLQDDYSPLARVEAWRISSLRIMLVSILLLCSVFVIQSAWQSVTEKIAYVIPMSLTFY 73

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF-----YYPMVTASIARITLASIVLY 321
           I L   L  +R H  +      G+  +A +   +         +    +      + +L 
Sbjct: 74  IALTAMLFISRRHYYLSSCGLIGLIVLAAISFNATQNNQTLSMLGPVVMYSTPFVAFILL 133

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
                ++     +    +LI    L   +     +       + I+       + L +  
Sbjct: 134 GWKAGLFCIFLNFLPLYILINQISLADYFTPFPVLKHANYYLHVILFVFTNICIPLAIAR 193

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 +        +Q + S  +      + +       D  R+ +       ++L   
Sbjct: 194 ASIAAKRGNQFNIERNQILTSQNQLYHALFVDAQTAKIIVDNKRNIIEANDAAISLLR-- 251

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
               +   + ++        +   +I           +      R    +   + +  + 
Sbjct: 252 ----NNLPKQFIG-------ERVDSIFPELSEQNDKLVVN----RTLGAKMKVLELSAQS 296

Query: 502 MSNSNGDILRYIGIANDITEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +++     L  +    D++ +           +        D   G+PNRQ   ++L+  
Sbjct: 297 INDE----LHTLITIQDVSAKALLHKTLAVQTQARQRQKLYDENIGLPNRQWLENKLSA- 351

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
              +A   N   ++  I I+    I    G      VL  L+  + E +     +A L  
Sbjct: 352 ---NAAQFNTVISLCAIRINNAHFIEQKYGFLYLPKVLKRLSTILSEQIGDRSCIAVLDK 408

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +  G  +   +++  I      +  ++   I   +  I V    G A+        S+++
Sbjct: 409 HSLGFAISILDDA-IIKSAMQQVVSTLPRSIVFDDISIHVDCKAGVATHQID-EDVSQLI 466

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            NA  A+    +    +           +   I   L  A+ N ELY+ Y P +R  D  
Sbjct: 467 NNALHAV--TDNDAVINYYETGSQQRFIEHQEISILLNEALSNDELYVDYQPKVRG-DGT 523

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           I+G+EAL++W+ P  G +S   F+ IAE+  ++  +  +++  +   I  W D+     +
Sbjct: 524 IIGMEALLRWNSPIIGGVSPGVFIPIAEQSGLVLRLTRWLVNHVCMQIRQWEDEGLDI-V 582

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + INI+  DL   +  + +   + +    P  I+L  +ES    N   +   +  L   
Sbjct: 583 PVAINISGPDLDQPDFKKYLINCVVEQNIKPHFIELELTESAKTRNIPDAIATVQYLASF 642

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G  +TLDDFG   S LS L   P   VK +   +T      K   ++ +I+ M K  +  
Sbjct: 643 GFCITLDDFGVGYSGLSKLTNFPVQRVKIDRQFITNIQSDAKNAQVVEAIVAMCKVFKID 702

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE-RFPLVK 961
           ++A+ +    ++  L  MGC   Q    A P+   +I KL+ + + P VK
Sbjct: 703 VLAEGVEDLREVDCLLEMGCKSFQGFAFARPMSRQNIAKLIDKTQMPNVK 752


>gi|296535532|ref|ZP_06897715.1| GAF domain/GGDEF domain/EAL domain protein [Roseomonas cervicalis
           ATCC 49957]
 gi|296264145|gb|EFH10587.1| GAF domain/GGDEF domain/EAL domain protein [Roseomonas cervicalis
           ATCC 49957]
          Length = 599

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 190/418 (45%), Gaps = 15/418 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND---VLGIAVGDDVL 592
           D ++G+PNR  F+D        +          +V+D+    ++      LG A  + + 
Sbjct: 167 DPVSGLPNRLQFIDEFA-----ARGPARGEGAALVVDLSHSSQLGQAVASLGPAYVEALA 221

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                 +   L     L +   + F  +L  E  +   A  A A+  +  +P+   E  +
Sbjct: 222 RHAAGVLRAALPRHGGLYQTGSSAFLALLEREGGAGWQAGLA-ALEAAFRVPVPFGEVPV 280

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKEDL 711
           T T   G A + +++  +  +L+ A  A   A+  G      +    +    R+ +  D+
Sbjct: 281 TATPVFGIAEFGAAERDAEPLLRAAACAAEEARAAGEGARLYNAASEARSQRRLRLLTDM 340

Query: 712 CLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A     +L LV+ P I   D   +G EAL++W HP  G +S  EF+ + E+  + + +
Sbjct: 341 VPALQAEDQLSLVFQPRIDTADGSCLGAEALLRWHHPALGPVSPGEFIPLVEQTALTRPV 400

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++ER A  + + R       + I +N+++ +L + +  E +   +S+   +P  ++L
Sbjct: 401 TRWVIERAATQLAALRRDGIG--LRISVNVSALNLAEPDFAEHLLDSLSRHGLAPQAVEL 458

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ES ++ N E +   L  LR +G+ + +DDFGT  S LSYL  +P + VK + S +  
Sbjct: 459 EFTESALLRNGEATFAQLRALRALGMDVAIDDFGTGYSSLSYLQTLPANIVKLDQSFIRR 518

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +       ++ ++I +A ++   ++A+ +  +  +  L   GC+  Q   +A P+  
Sbjct: 519 LSSNARDQRLVAAMIQLAHDLGHRVVAEGVEDQAALDFLAARGCEEAQGYLIARPMPE 576


>gi|297584954|ref|YP_003700734.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
 gi|297143411|gb|ADI00169.1| diguanylate cyclase/phosphodiesterase [Bacillus selenitireducens
           MLS10]
          Length = 748

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 174/442 (39%), Gaps = 12/442 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
             +  +     A+ D LTG+PN     + +  + +      +     ++I+I  ++ IN 
Sbjct: 307 LYRKTKSHFDLAYFDPLTGLPNATYLKEYVKELKEDPGASPS---AFLMINIRNFRAINL 363

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G  VGD+ L  ++  +   +   ++L R + +RF +I    ++  ++ D A  + + +
Sbjct: 364 SKGYTVGDETLKLISHALNRRVGDAEMLFRFNSDRFIVIREDGSDDQRLLDDARQLIEEV 423

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  +  +     V       +       + ++ +   L +          +  F      
Sbjct: 424 SAHLEPIVESFPVKLQAAILAGNHRLADAEDIYRRLALTLDKIATDANQSILFFDADLEA 483

Query: 702 SDRV--MIKEDLC---LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
             +   ++K++L           LY  + P +RL   ++ G E L ++    +G I   E
Sbjct: 484 DYQRIELLKQELRGVVDGTNRESLYYHFQPQVRLDTGKLSGFEVLARFHSETYGEIRPDE 543

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +   +L           D +      + +N++   L   +      A
Sbjct: 544 FIRLAEENQLITDLGDRILIDAVSMARDIMDASKAV-YPLAVNLSVIQLYRPDFTAFAVA 602

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           L        S I+   +ESV     +    L L  L+  G S+++DDFG   S  S L  
Sbjct: 603 LCEDYGIPRSMIEFEVTESVFTDLFDEKPILQLQELKDAGFSISMDDFGKGYSSFSRLRD 662

Query: 876 IPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P + +K + + +          ++L  II M   +   ++ + I  +     L ++GCD
Sbjct: 663 LPVNRLKIDKAFIWELDATNTEESLLEDIISMCHKMGLDVVGEGIETDYQQNYLKQLGCD 722

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q  + + P+     L ++KE
Sbjct: 723 LGQGFYFSRPVDREKALGMVKE 744


>gi|238926480|ref|ZP_04658240.1| possible signaling protein [Selenomonas flueggei ATCC 43531]
 gi|238885674|gb|EEQ49312.1| possible signaling protein [Selenomonas flueggei ATCC 43531]
          Length = 724

 Score =  317 bits (812), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 172/421 (40%), Gaps = 17/421 (4%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +TG+ N   F+   +  L    T+     T +  D++ +K  N       G+  L  + 
Sbjct: 19  QVTGLLNMMQFMRHASVHLQDPMTEP---LTFIYFDVENFKSFNQRYSFQQGNRFLRYMA 75

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             + E     D++AR + + F +  + EN   +I      +         + + ++ +  
Sbjct: 76  DLLRESFT-GDLIARFNDDHFVVATVIENPGGQIQFIHDRIH--------VYDPQLPMEV 126

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLA 714
             G  S +   +  + ++  A++A    K         F  +          I      A
Sbjct: 127 KAGIYSPSEDVMDIALIIDRAKIACNSIKSTYDLVWAIFDPAMEDELNFRNHIIRSFQEA 186

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
            +   + + Y P IR M  EI GLEAL +W  P +G IS   F+ + E+  +   ++L++
Sbjct: 187 RDAGYIEVFYQPEIRTMTREICGLEALARWRDPVYGMISPGVFVPVLEDAHLSPQLDLYI 246

Query: 775 LERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +E + R I+  R       +  + +N++  D    ++ + ++ +  +       + +  +
Sbjct: 247 IELVCRHIVQMRSDMPDWNLLRVSVNLSRADFRLMDMVQAVEDVRLRYDVPRQMLNIEVT 306

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
           E  +  +    +  + R R  G  + +DDFG+  S L+ +    FD +K + + +    +
Sbjct: 307 EGALNHDEAFLQGEIARFRTAGYEVWMDDFGSGYSSLNNVKDYVFDVLKIDMNFLRSFDT 366

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             K   ++RSI+ MAK +    +A+ +  E     L  +GC+ +Q    + P+     + 
Sbjct: 367 NPKSAVVIRSIVNMAKELGMHTLAEGVETEEQFAFLQEIGCEKVQGYLFSPPIPLTDAIA 426

Query: 952 L 952
            
Sbjct: 427 Y 427


>gi|163814328|ref|ZP_02205717.1| hypothetical protein COPEUT_00479 [Coprococcus eutactus ATCC 27759]
 gi|158449963|gb|EDP26958.1| hypothetical protein COPEUT_00479 [Coprococcus eutactus ATCC 27759]
          Length = 573

 Score =  317 bits (812), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 187/429 (43%), Gaps = 18/429 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D  TG+ N+ S +     ++     DD      +  +I  +K +N V   + GD +L 
Sbjct: 150 HTDINTGVANQDSLMYYAVNLIKNGRIDDYTG---IFFNIHNFKYVNKVFDYSQGDVILR 206

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS-IAMPINLLEREI 652
           +  + +   L   + +ARL G+ F +I  +       +DF   ++   I+      +RE 
Sbjct: 207 NYAQMVKSYLDSDEEIARLGGDNFVVICRN----ENASDFINKIKDVHISHEYRSDKREF 262

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKED 710
            +  + G A          E++    +A   A+  G   +  +     +       I   
Sbjct: 263 QLGVTAGIAGLEGVAK-PREVMARTSIAYQAARKNGAGSIVVYTKEIQKHLMDDQEILAA 321

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A+  +E  + Y P +R+ D+ I G EAL++W       ++ + F+   E    +  +
Sbjct: 322 FPQALAAAEFVVYYQPKVRIADKSIYGAEALVRWVR-DGQVVTPARFIPQLEREGSVCRL 380

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + +MLE++   + S  D+     + + +N + + L +++L E +   I +     S I++
Sbjct: 381 DYYMLEQVCGFLKSRLDK-GQKIVPVSVNFSRRHLEESDLVERITGTIDRFGIDRSYIEI 439

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL--- 887
             +ES    N E    ++ RL++ GIS ++DDFGT  S L+ +  +  DT+K + SL   
Sbjct: 440 ELTESEDYQNYEIMSSVIRRLKERGISTSIDDFGTGFSSLNMIKKVDLDTIKIDKSLIPF 499

Query: 888 --MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             ++ +  + I +  SII +   +    +A+ +     +  L ++GCD +Q      PL 
Sbjct: 500 DDVSNNKHQDIVMFSSIIDLIGRLGKRSVAEGVETHQQLDYLGKLGCDIVQGYVFDKPLP 559

Query: 946 FNSILKLLK 954
            +   + L+
Sbjct: 560 KDEFERRLE 568


>gi|149375286|ref|ZP_01893057.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149360322|gb|EDM48775.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 1233

 Score =  317 bits (812), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 99/454 (21%), Positives = 185/454 (40%), Gaps = 14/454 (3%)

Query: 505  SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              GDI        DI   ++    +   A  D LTG  +R  F  +L   L     +   
Sbjct: 779  KQGDIPFVDQSLFDI--VQEVYSKLNFEATHDALTGCLHRHDFEKQLAQALSAMDDNPGT 836

Query: 565  RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---ILARLSGNRFGIIL 621
              T+MV DID++  IN   G  +GD++L      + E          + RL GN F ++ 
Sbjct: 837  H-TLMVFDIDEFSVINATYGTGIGDELLKRFASLLQEQASQHSGDHCIGRLGGNEFALLA 895

Query: 622  ISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
                    + DF+  +R +       + + E   T S     +  +  ++ E++  A LA
Sbjct: 896  KKMPVEEGL-DFSERLRDAFRTESHTIGDTEFATTLSASVCPFEDTVRSAGELMNQANLA 954

Query: 681  MYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEI-VG 737
            +  AK +GGN VE  R  S ++     +   ++  ++ +  LYL    I+ L        
Sbjct: 955  LKSAKRKGGNSVERVRDQSQQAPASGPLWVPEIDRSIRDGSLYLRAQRILPLTGGSTGDM 1014

Query: 738  LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
             E L+   +     IS   ++  AE+      ++L++++     +    D       F  
Sbjct: 1015 YELLLGLQNSSGQEISPQSYIEAAEQFRRSSRVDLWVIDEAIGWMEEHPDAMESIHTF-N 1073

Query: 798  INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            IN++   L D+     ++  + +      +I    +E+  + N   +   +  ++++G  
Sbjct: 1074 INLSGASLSDDAFLFDLETRMKQHSALTHQICFEVTETSAVANLHYAADFMTEMKRLGCR 1133

Query: 858  LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIA 915
              LDDFGT  S  +YL  +P D VK +G  +          A++RSI  +   ++   IA
Sbjct: 1134 FALDDFGTGLSSYAYLQKLPVDYVKVDGIFVRDMASNLTNYALVRSITELCHFLDMKTIA 1193

Query: 916  KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            + +     ++ L  +  D+ Q   +A P   +S+
Sbjct: 1194 EYVEDMETLELLKEIQVDFGQGFCIAKPRRMDSL 1227


>gi|225388034|ref|ZP_03757758.1| hypothetical protein CLOSTASPAR_01768 [Clostridium asparagiforme
           DSM 15981]
 gi|225045887|gb|EEG56133.1| hypothetical protein CLOSTASPAR_01768 [Clostridium asparagiforme
           DSM 15981]
          Length = 590

 Score =  317 bits (812), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 181/439 (41%), Gaps = 24/439 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S + +   ++ D LT   NR  +++    +     +   +   ++ +D++  K IND  
Sbjct: 169 QSQKQLSQLSYYDRLTSFYNRNRYIEDTKDL-----SSTEVSVGIVYLDVNGLKDINDQR 223

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD+VL    RR+           R+ G+ F II       L  +       +  A 
Sbjct: 224 GHAYGDEVLAECARRMKRAF-PGANFYRIGGDEFVIICPGMEKELFESRTRDLKAQFRAD 282

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRS 702
           P+          A+IG + W+      ++++ +A+  MY  K      H  S R      
Sbjct: 283 PM--------YRAAIG-SRWSEKIDDLNQIIADADARMYEDKKTFYRTHPASNRYRHHSD 333

Query: 703 DRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           + + +     L   +  +   +   P I   D   VG EALI++       +    F+ +
Sbjct: 334 ELLHLADPAVLQEEIRQNRFVVYLQPKISCPDRTAVGTEALIRYQPRPDALVLPGNFLPL 393

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   +  I+ F+ + +   + SW +Q       + +N +   L      E +  +   
Sbjct: 394 MEETGAVSQIDFFVFKFVCSRLKSWMEQGKAV-FPVSVNFSRCSLAQPMFVEQLTTICDS 452

Query: 821 TLYSPSRIKLSFSESV-VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +  SP  +++  +ES+  + + +  R L+ ++R+ G S+ +DDFGT+ + L+ L  + FD
Sbjct: 453 SGISPELLEIEITESLREVEDLD-IRALIIKIREAGFSVAIDDFGTEYANLALLSSVEFD 511

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + S++       +  AI+ SI  +   +   ++A+ I  E  +  L   G    Q 
Sbjct: 512 VLKLDKSMVGDVAHNPRTRAIVESIAEICGKLGIRMVAEGIETEEQMAALNACGVRLAQG 571

Query: 938 SHVASPLGFNSILK-LLKE 955
                P+      +  L++
Sbjct: 572 FLFGKPVCAGQFEETYLQQ 590


>gi|218517144|ref|ZP_03513984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 408

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 106/398 (26%), Positives = 188/398 (47%), Gaps = 6/398 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             + + +    +          R    +    D+VW  D+    +        ++G A  
Sbjct: 12  LVLSRDITERKHAEGTTIEARARLLSVLQTIPDMVWLKDVTGKYLLCNHAFEELVGKAEA 71

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G                FR   +  +   R  +  E      D +   +  R  P+ 
Sbjct: 72  EIVGKTDY--DLFTPELAQFFRDKDEEAMQAGRILINEERFTAHEDGRSTLLETRKVPVF 129

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + G ++  +G+A DITE   S + I   AF D+LTG+PNR  F +RL  ++  +A+   
Sbjct: 130 -TGGKLMGILGVARDITELDTSRKKIHQMAFYDSLTGLPNRTLFNERLREMIGDAASAGQ 188

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  VM+ID+D +K IND +G  VGD++L  +  R+ + ++  D +ARL G+ F ++L +
Sbjct: 189 -RAGVMLIDMDHFKAINDTMGHPVGDELLRQVATRMKKGVRASDTVARLGGDEFAVLLPN 247

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             ++  +A  A  M  +      L +REI V+ SIG + + +      +++K A+ AMY 
Sbjct: 248 VQDNDDLAQIASRMLAAFGERFMLSDREIFVSCSIGISVFPNDGDAPDDLVKYADSAMYL 307

Query: 684 AKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G ++   +          R+ ++ DL LA+++ +L L Y P + L + +++G EAL
Sbjct: 308 AKRSGRSNFRFYSKDLTIGAEKRLALESDLRLALKHEQLELHYQPKVLLDNGKVIGSEAL 367

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           ++W HPK G I   EF+ +AEE  +I  +  ++L    
Sbjct: 368 LRWHHPKMGMIPPGEFIGVAEETGLIIDLGRWVLHEAC 405


>gi|300115239|ref|YP_003761814.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299541176|gb|ADJ29493.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Nitrosococcus watsonii C-113]
          Length = 695

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 109/572 (19%), Positives = 219/572 (38%), Gaps = 15/572 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           VI      +++     +    +     R    +  S D +  +      +        + 
Sbjct: 120 VIRRELQDLENRRVRRHSEMVLEESERRVRALLESSRDAI-GYVHEGMHIYANRAYLELF 178

Query: 439 GL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G      + G     L  I   +   F+  L  +        ++  + R AD        
Sbjct: 179 GCHELDEIEGMP--LLDMIAPEEHGRFKVFLKEYGASEGENARFTLQARKADGHTFTAAW 236

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            + P ++  G+    I +  D T    + E I     +D LTG+ +R  +L+ +   + L
Sbjct: 237 ELTP-ASIEGEFCTQI-VIRDETSDPAAEEKIKQVQQRDILTGLFSRPHYLELIEKRV-L 293

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +A   +    ++ I ID++ ++   +GI   D V+V + R + +      ILAR   + F
Sbjct: 294 AARAGDRESGLLYIAIDQFNRVRARVGIGASDLVVVDVARILQQYCDEKVILARFGDDIF 353

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L   ++  + A      +      + + ER + VT SIG      S     ++L+ A
Sbjct: 354 TLLLPHGSDEQEDALAEQLRQAVDQHLVEIGERSVNVTCSIGICRIGESAPGVQQILERA 413

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCLAVENSELYLVYHPIIRLMDE 733
             A   A+  GGN +E +R               +  L  A+      L++ PI+ L  E
Sbjct: 414 HKACLKAQEAGGNRIERYRPVIEDLTDQEKIKRWEAQLWEAMNKDGFSLLHQPIVSLHGE 473

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
                E L++        +    F+  A +L ++  I+ +++ +    + S      +  
Sbjct: 474 TEEIYEVLLRMIDEAGNYVLPEIFLEPAAQLKLMGEIDRWVIAKAISVLHSRHQVGQLTR 533

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            F+   ++   + D +L   ++  + ++      +    SE   +   +R + L   LR 
Sbjct: 534 FFVK--LSDPSIHDKKLLPWLKKHLQESGLDARSLIFEISERSALNYLKRVQQLAEGLRA 591

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET 911
           +G    L+  GT     + L +I  D +K NG+ +      E+    +++II MAK +  
Sbjct: 592 LGCQFALEHVGTGLDTSNCLKHIKVDYLKINGAFIENLLQDEQNQEAVKTIIEMAKEVGK 651

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             IA+ +     +  L + G DY Q  ++  P
Sbjct: 652 PTIAEFVSDANTLALLWQFGVDYAQGHYIQEP 683


>gi|302671115|ref|YP_003831075.1| GGDEF/EAL/PAS domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395588|gb|ADL34493.1| GGDEF/EAL/PAS domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 575

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 218/554 (39%), Gaps = 32/554 (5%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           LA    G  V+  D+       + +     GL    +      W  ++H  D+  +   +
Sbjct: 41  LANANKGHYVYITDLRTGLSKWSEECVKEFGLPPEYVSNAGEIWGEHVHPVDKARYEQSM 100

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                 R       +R R    ++  +  + R + + +G+ + ++G   +          
Sbjct: 101 QDIFNERTDSHDLVYRARNQYGEYVTVSCKGRVIYDDDGNRILFVGTMIN---------- 150

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               +  DN+T +  ++  L+ L         +D  R  ++ +    +  IN+V G   G
Sbjct: 151 HGIASDYDNVTNLYTKERLLETLADY-----REDKQRYNILFVGFYNFIDINNVYGYEFG 205

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           + VL +   ++ E +   ++ +   G +F ++         + +    + +     I + 
Sbjct: 206 NKVLKTFAEKLLEYIDDSEVFS-AGGTKFAVVSTDLKLRE-LENIYNELVEYARSSIEVE 263

Query: 649 EREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSSFRSDR 704
              + +         T+  +    +  N     + +MY     G  +  S        +R
Sbjct: 264 GAHVGIMLGASCTEVTNFAVDEHTVFSNGIRGLDESMYE--KHGELYAFSNSSMDKSHER 321

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           ++I   L  ++ ++     +V+ P++    E + G EAL++W    +GN+S ++F+   E
Sbjct: 322 LVIVNALRNSIIDNCDGFSIVFQPVVDAEKETLRGAEALVRWKKDPFGNVSPADFIAWLE 381

Query: 763 ELCMIKAINLFMLERIARDIISWRD--QANMPPIFILINIASKDLLDNELCEGMQALISK 820
           +  +   + L++  +  +    W++      P + + INI+   L      + + +L+ +
Sbjct: 382 DDPLFYDLGLWIARQAMKQ---WKENVLPKRPELKLSINISYTQLERANFRKDILSLVRE 438

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
             +    +KL  +E   + +    R  +  L+  GI   LDDFGT  S L  +  +P   
Sbjct: 439 LDFPTKNLKLELTERCTILDKGFLRNEIIYLKSQGIDTFLDDFGTGFSALELILLLPVAA 498

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + + G    E++ A+  +II  A+N+   +  + I  E+    L + G    Q  
Sbjct: 499 IKIDRTFVNGIEEDERKQAVAEAIITCARNMGLHVTVEGIEDEVSRDILRKNGPTSFQGF 558

Query: 939 HVASPLGFNSILKL 952
           + +  +  +  +KL
Sbjct: 559 YYSRAITIDDYVKL 572


>gi|313904122|ref|ZP_07837501.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313470924|gb|EFR66247.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 562

 Score =  316 bits (811), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 181/440 (41%), Gaps = 13/440 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ +  + I   A  + LTG+PN   +L+ + +++     D+         ++      N
Sbjct: 125 EKYRLFDQIRLTALTNYLTGLPNAGGYLEVIKSLVKSGKLDEYDSY---YYNLKSMGLFN 181

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   GD ++        E ++  + +A   G+ F  ++       +  +F   + ++
Sbjct: 182 MRFGGEEGDRIIQRYAALCREFIRPDECIAHFGGDNFVALIR----RERAEEFRCFLNET 237

Query: 641 IAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVS 698
               +   E+  + +  + G       +    +++     A+ +AK RG      +  + 
Sbjct: 238 ETYALRGEEKIPVRLKCTAGRMRIEKKESAFWKIIAGPATALAYAKKRGIDFADLTDEML 297

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              + +  ++ +   A+ N E    Y P +      IVG EAL++W       I   +F+
Sbjct: 298 QQANRQKEMQHNFSSALRNGEFVSFYQPKVDTETGRIVGAEALVRWIR-DGVVIQPDQFI 356

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              E+  M + ++LF+LE   +++  W        + + +N + +DL D +L E +  +I
Sbjct: 357 PALEKAGMTEQLDLFILEEACKNLRKWIS-NGNEDMVMSVNFSRRDLEDPQLSEKIIHII 415

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K   +   I +  +E+            +  + +  I  ++DDFGT  S LS L     
Sbjct: 416 EKYHLNRKNILVEMTETTSEQEKNLMMRFMDTMSEHDIMTSIDDFGTGYSSLSALRDYTV 475

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + S ++     +K  AI+ SII MA+ +   +I + +     ++ L  +GC  +Q
Sbjct: 476 NEIKIDKSFISHDELQDKDRAIIGSIIKMAELLHVDVITEGVENMEQVQFLQDLGCTKVQ 535

Query: 937 DSHVASPLGFNSILKLLKER 956
                 PL    +  +L  +
Sbjct: 536 GYLYGKPLPPEQLEGMLDRQ 555


>gi|227111882|ref|ZP_03825538.1| putative signaling protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 592

 Score =  316 bits (811), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 193/437 (44%), Gaps = 23/437 (5%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID---IDKYKKINDVLGIAVGDDVL 592
           D +T +PNRQ  +D ++ I     TD +    +++ID   I    ++   LG+   + +L
Sbjct: 167 DAVTLLPNRQRLIDDISHI-----TDIHEPYLLILIDTIDISYAYEMGCALGMPTVEGLL 221

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNS---LKIADFAIAMRKSIAMPINLLE 649
             +   +   L   D L   +  RF +++ ++       ++   A  + +SIA  I L  
Sbjct: 222 KDIGVFLRLSLNSSDNLYSAAVGRFALLVKADRKEKVLAELDACAERIHESIASHIPLK- 280

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIK 708
               +   +G+  +        ++L+ +  A+  A                 +     + 
Sbjct: 281 ----LELFVGYTVFQIPAKDPQQILRESMSALRTAITRNIRQFAYDPEADRAQQIAFTLL 336

Query: 709 EDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +L   ++N+   LYLVY P + +    ++G EALI+W HP+ G I   +F+ +AE   +
Sbjct: 337 NELADVLQNNKPGLYLVYQPKLSIKTNSVIGAEALIRWRHPELGEIYPDQFIPLAEGTTL 396

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           ++ +  ++    A  +  WR +       + IN+++++  +N+    +  ++     +P 
Sbjct: 397 MRPLTDWVTREAACQVKQWRQEGLT--FPVSINVSARNFSENDFIPRLITILENHGLTPR 454

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I +   E+  +     +   +  L+++G ++ LDDFGT  S LSYL  IP   +K + S
Sbjct: 455 DIDIECVETQKIIESTETLATIQTLQQLGFTIALDDFGTGYSNLSYLRNIPSTVIKLDKS 514

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+       K   I++SII M   +   ++A+ +  +  ++ L   GCD +Q  + + P+
Sbjct: 515 LIKDIKTDRKSRVIVQSIISMLHKLNYIVLAEGVENKETLEYLAHFGCDEVQGYYFSRPI 574

Query: 945 GFNSILKLLKERFPLVK 961
             ++    L  R     
Sbjct: 575 PPDAFTTWLTTRSSQTS 591


>gi|84389380|ref|ZP_00991186.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Vibrio splendidus 12B01]
 gi|84376895|gb|EAP93768.1| signal transduction protein containing a membrane domain an EAL and
           a GGDEF domain [Vibrio splendidus 12B01]
          Length = 501

 Score =  316 bits (811), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 184/424 (43%), Gaps = 9/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D++TG+ +   F   L   L  S   D     + ++DID +K + D +G    +  L  +
Sbjct: 77  DSVTGLHSPSVFYRYLNKRLKNSQAID--HYVLFLLDIDNFKSVADQIGFENTNSFLKDI 134

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            R I   ++   + +R+  + F  ++  ++     +  A+  R+            I  T
Sbjct: 135 ARSIELPIEHQPLSSRVHSDGFACLVKLDDKEDIESYIALVHRRFNQCAYRYD---IHAT 191

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-IKEDLCLA 714
             IG A + S    + +++ +A  A+  AK             +    +   + ++L  A
Sbjct: 192 CCIGAALFPSDGNNAKQLMASATHALTEAKKSKDTIEFHDPKLTELERQRQEMVQELRKA 251

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +++  + +V+ P   +  + + G+E L +W H ++G +S   F+ +AEE    + +   +
Sbjct: 252 IDDKAIDIVFQPKFNIESKFVAGVEVLSRWTHERYGVVSPDIFVALAEENHFCRDLTTLV 311

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           LE+ A  + +     N     + +NI++ +L   +    +   + K       + L  +E
Sbjct: 312 LEKTASQLRANGLLGNALN-SVSVNISAVELNSVDDMNHLDEYLRKDPEFARLLCLEITE 370

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           + ++ + ++  + + +L+K G+S ++DDFG   +       +  D +K + S ++G  + 
Sbjct: 371 TAILKDIDQCAIAVQKLKKQGVSFSIDDFGVGYTSFGIFSKLDVDEIKVDRSYISGLEDD 430

Query: 895 --RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
               AI   II +A+    +++A+ +     +  L  + C+  Q  ++  P+ +  + + 
Sbjct: 431 YRSRAITSGIIDIARGFGISVVAEGVENAQQLSILKTLNCEQAQGYYLGYPMPYKQLKES 490

Query: 953 LKER 956
           L   
Sbjct: 491 LTSE 494


>gi|304395042|ref|ZP_07376926.1| diguanylate phosphodiesterase with GAF sensor(s) [Pantoea sp. aB]
 gi|304357295|gb|EFM21658.1| diguanylate phosphodiesterase with GAF sensor(s) [Pantoea sp. aB]
          Length = 590

 Score =  316 bits (811), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 197/431 (45%), Gaps = 19/431 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNR   +  +  +   +         +  +DI +  ++   +G+A  + +L  +
Sbjct: 167 DVITHLPNRPRLIRDIHQLTLTAPHSRFRLILIDCLDIIRAYELTRAVGVAPMEKLLKQM 226

Query: 596 TR----RIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLE 649
            +    R+   L   + L   +  RF I+    +   +  + D    M+  +A  I L  
Sbjct: 227 AQDVANRLN--LPENETLYSFAPGRFAIVQPYSDRFTAHNMPDLFKGMKADLAENITLD- 283

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIK 708
               +    G   +   ++ ++E ++ A  A++ A               S R+D  MI 
Sbjct: 284 ----LNVFTGETEFVPGQMNANETIRQAVSALHEAIDENINAMSFDESYDSRRTDDFMIM 339

Query: 709 EDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            DL  A  ++ ELYL + P + L   + VGLEALI+W+HP+ G +  SEF+ +A +  +I
Sbjct: 340 NDLAQALNKDEELYLAWQPKVCLRTGKTVGLEALIRWNHPERGELFPSEFIPLAGKTNLI 399

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++++     +  W  + ++  I + IN + +D    +  + + A ++      + 
Sbjct: 400 SDLTNWVIDHTVEQLARWNREYDL--IPVSINASERDFARPDFADELVAKLAAAQLPNAI 457

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +   E+ ++   + +   L  L+  G  ++LDDFGT  S +SYL  IP D +K + SL
Sbjct: 458 LGIECLENELITKSDVAIKGLEALKSHGFVISLDDFGTGYSNISYLQDIPLDVIKIDRSL 517

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++   E   +  I+R II M K +  T++A+ +  E  +  L   GCD IQ    + PL 
Sbjct: 518 ISRMGEDDASKIIVRCIIQMLKELNYTVLAEGVETEATLGLLKTYGCDQIQGYFFSKPLP 577

Query: 946 FNSILKLLKER 956
            + I   L ++
Sbjct: 578 ASDIEHWLFQK 588


>gi|312879045|ref|ZP_07738845.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782336|gb|EFQ22734.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 626

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 1/310 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
                 +         +    ER  LA+ G+ + +WDWDI   +   +     +LG A  
Sbjct: 311 VGTNSDITELKETEHRLRESEERWQLAIQGTDEGIWDWDIPNRKAFFSHRFKAMLGYAPE 370

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +    R+ L  IH  D       L  +  +RR   + E R+   D +  W++ R + + 
Sbjct: 371 ELEDVPRSCLDRIHPEDLPLVARTLSDYFNHRREDYRVEHRMVRKDGKVFWVLARGQGLF 430

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           ++ G  LR  G   DIT+++   E I   A  D LTG+PNR  FLDRL   L  +     
Sbjct: 431 DTAGRPLRIAGSLQDITDRRNHEETIAHQATHDALTGLPNRPLFLDRLDQALARAERTGE 490

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  V+ +D+D +K+IND LG  VGD +L  +  R+ E L+  D +AR+ G+ F  +L  
Sbjct: 491 -RLGVLFMDLDHFKEINDHLGHLVGDRILAEVALRLKETLRAQDTVARMGGDEFTFLLPG 549

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                     A  + ++   P  L +  ++VTAS+G A +      + ++++ A+LA+Y 
Sbjct: 550 LGRPEDAERAAGRILEAFRAPFVLEDTAVSVTASLGIALFPEHGTGTLDLMRRADLALYQ 609

Query: 684 AKHRGGNHVE 693
           AK RG N  E
Sbjct: 610 AKSRGRNRYE 619



 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 21/195 (10%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F  +Q V         + S  +R   A+ G+ D +WDWD+V      +P   T+LG   G
Sbjct: 181 FGTLQDVTELRALGSELESSRQRLQFALEGAQDGLWDWDLVTGETYFSPRYYTMLGYEPG 240

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
              G    W   +H  DR+     +   +     + +  FR R  D  + W++ R   + 
Sbjct: 241 EFPGTSEAWKALLHPEDREEVLRTIAERLVTGESQHRVTFRARHKDGSWRWILGRGLVVG 300

Query: 503 SNSNGDILRYIGIANDITEQK------KSLEGILCNAFQ---------DNLTGIPNRQSF 547
            +  G+ LR +G  +DITE K      +  E     A Q         D    IPNR++F
Sbjct: 301 RDEEGNPLRMVGTNSDITELKETEHRLRESEERWQLAIQGTDEGIWDWD----IPNRKAF 356

Query: 548 L-DRLTTILDLSATD 561
              R   +L  +  +
Sbjct: 357 FSHRFKAMLGYAPEE 371



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 5/149 (3%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
             +             + +  D +R   A        W  D    +   +  I  +L L 
Sbjct: 55  FLWFRSDRAQKGQKRIEALLEDADR---AEAQVRLGTWSLDPPFRQTRWSRGIRRLLDLP 111

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             +  G        +   D    R   +  +  R G   +E  +R  D     +      
Sbjct: 112 PEAPAGE-ETLCTRMAPQDVATLRKH-EETLPLRGGSFHFEHPIRLPDGSDRVVRAIGEA 169

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGIL 530
           + +  G + R  G   D+TE +     + 
Sbjct: 170 LEDPTGRVTRLFGTLQDVTELRALGSELE 198


>gi|319936760|ref|ZP_08011173.1| hypothetical protein HMPREF9488_02007 [Coprobacillus sp. 29_1]
 gi|319808317|gb|EFW04882.1| hypothetical protein HMPREF9488_02007 [Coprobacillus sp. 29_1]
          Length = 905

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 173/446 (38%), Gaps = 22/446 (4%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           LR +     +T ++   E  L      D LT   NR  F+  +  +     +  +    V
Sbjct: 472 LRTVQYFIALTMERNENEKTLFELSHLDKLTSFYNRNCFIQDVADM-----SHQHESVGV 526

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +D++  K+ ND  G   GD +L +    I         L R+ G+ F +I +  +   
Sbjct: 527 IYLDVNGLKETNDNFGHDAGDKLLKACAEIIKRSSTSK-YLYRIGGDEFVVIYMKISKEE 585

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              +        ++              +IG   WT        ++K A+  MY  K   
Sbjct: 586 FEYNVQKMKNNFMSS---------QCRVAIG-VQWTKDSQDIQNIIKRADELMYSNKQEY 635

Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
            +  ++            +     L L +   + ++     I +   E+VG +ALI++  
Sbjct: 636 YSTHKTTGRYRHDKTLQYLSNPDILDLKISQGQFHVYLQAKIDVKSCELVGADALIKYKD 695

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                 S  +F+ I E+   I  I+ F+ E+I + +  W++        I  + +    +
Sbjct: 696 DSQFIQSPDKFISILEDSHQIDKIDFFVFEKICQQLQEWKNANKKL-FPISSHFSRSTFM 754

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            ++  E ++  +         +++  +E++   N +  +  + ++R  G  +++DDFG +
Sbjct: 755 KSDFLERLETTVELYDVPKKYLEVEITENMFTTNYKEVKERITQIRSAGFIVSVDDFGIE 814

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ L    FD +K + S ++   S +    ++ S++ +   +   +IA+ +  +  +
Sbjct: 815 SSNLALLATAQFDILKIDKSFISDVVSNKNTRTVIESMVDVCTKMNIKLIAEGVENKEQL 874

Query: 925 KELTRMGCDYIQDSHVASPLGFNSIL 950
             L   G   +Q    + P+      
Sbjct: 875 NVLKECGIRTVQGFLFSKPIPMIEYE 900


>gi|261414536|ref|YP_003248219.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261370992|gb|ACX73737.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327302|gb|ADL26503.1| EAL/GGDEF domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 564

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 206/482 (42%), Gaps = 19/482 (3%)

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND----ITEQKKSLEGILCNAFQDNLTG 540
            R  +N    + IR +     +   L+ + + +D    I  + + +  I   +  D +TG
Sbjct: 85  YRTGENGMATIEIRAKKSHKFSNPELQAVKLISDDMFIILGRSRLMSAIHYASQTDTMTG 144

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
            PN       +   ++L + +     + + +++  YK IN     A+GD  +   T  I 
Sbjct: 145 APNTAKL---VHHSIELKSKNKLHNFSGLFLNLKNYKYINQSKSPAIGDKGIALFTHTIM 201

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            +    +++ARL G+ F +++  EN    + + +  ++ ++  P     + I +T     
Sbjct: 202 AMCHDDEMIARLGGDNFFVLVKKENRDQFVKNLSS-IKVNVPTP---QGQVIPLTIQSRI 257

Query: 661 ASWT-SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVEN 717
             +    + T +E++  + +A+  ++   GN +  F             I      A+  
Sbjct: 258 GVYDIQPQDTMNEIMHCSSVALNESRVHPGNDIVYFTRKMLEDVYHEKEISSIFREALRR 317

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E  + Y P + + ++++ G EAL++W+      I  SEF+ I E+   I  ++ ++  +
Sbjct: 318 KEFIVYYQPKVSVKEQKLCGCEALVRWNR-NGQVIPPSEFLPILEKEASICLLDFYVFRK 376

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           +  DI +W D   + P+ +  N +   L +  L E +  ++ +       I++  +ES  
Sbjct: 377 VCEDIRNWLD-TGIEPVRVSSNFSRHHLSNPHLTEDILDIMKEFNIDSKFIEIELTESSN 435

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--- 894
             +    +  +  LR+ GIS+++DDFGT  S  + +  +  + +K + SL+    ++   
Sbjct: 436 FEDKIAMQKFVNGLRQHGISVSIDDFGTGYSTFAAIKDLNVNVIKLDKSLLDHIGDEKYH 495

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++++++ M   +   ++A+ +     +  L    C  IQ      PL      K L 
Sbjct: 496 DEVVIKNMVNMINELNLEVVAEGVENSKQLDFLQNAKCSIIQGFLFDKPLTKEEFEKRLS 555

Query: 955 ER 956
           + 
Sbjct: 556 KE 557


>gi|332531775|ref|ZP_08407660.1| putative signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038751|gb|EGI75193.1| putative signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas haloplanktis ANT/505]
          Length = 803

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 102/452 (22%), Positives = 185/452 (40%), Gaps = 23/452 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   E  L +A     T + N      +L     ++    N   T+ +I I  +  +N +
Sbjct: 353 RYQRERALYHATHTQQTRLLN----SSKLKQAF-MALQSQNRSTTLCLIKIRHFNSLNTI 407

Query: 583 LGIAVGDDVLVSLTRRIG-ELLKFPDI------------LARLSGNRFGIILISENNSLK 629
           +  + G  ++  + + +  EL    +             LA LS   F  I     N   
Sbjct: 408 ITSSQGYTLIKHIAKELELELSHEREFTNLETDLNTSPRLADLSSGVFACISTKTQNQEM 467

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +  S+     +    + ++ SIG +S           LK   LA+  AK    
Sbjct: 468 LEALLTKIISSLPKQYEIKGLNLQLSYSIGISSA-GKSNDFEYWLKRGYLALKKAKGSVN 526

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
               S   +      V +   L  A++ ++L L Y P I L+   + G EAL++W  P +
Sbjct: 527 QVGSSSNGN-NLMMDVALAAKLQQAIKTNQLALYYQPQINLLSNHVSGAEALLRWPDPTY 585

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            N+S  E +++AE   +I  + L+++E+  +DI+            I +N+++K+L  N 
Sbjct: 586 SNLSIEELIILAEHTGIINELTLWVIEQACKDIVELTKNGYNEH-TISVNLSAKNLTINN 644

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E ++ ++ K       +K   +ES  + + +    L+  L  +GI + LDDFGT  + 
Sbjct: 645 LAEKVENILIKYQVPAHLLKFELTESAFVDSQDALIKLVDELTALGIKVVLDDFGTGYAS 704

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL    F  +K + S +           I+++ I MA N+  +I  + +  +     L
Sbjct: 705 LSYLVNYHFSELKIDKSFVFDLPNNPTHQVIVQTAIDMAHNLNLSITIEGVETQEIHHLL 764

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
             M  D  Q    A  L +   L  LK ++ L
Sbjct: 765 KDMNADCAQGYLYAKALPYTDYLHFLKSQYSL 796



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/365 (12%), Positives = 113/365 (30%), Gaps = 9/365 (2%)

Query: 52  IYVNQGEDFQVFTAADIDGIS--RRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPH 109
            Y+++ +     T  +   +   +       S   +  W    L N S ++   +    +
Sbjct: 7   YYIDETKTKTFDTIINQPELLTHQPFSDVPWSFSQQNYWLFLHLENKSLNKQNVVAHFDN 66

Query: 110 YRLVGSHFFSPDLGSRRIISV--TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIST 167
                   +  D  ++ + +      E        +     F +       +   ++   
Sbjct: 67  PMADHLTVYRLDKNNKLVETYKLGDKEEALSLFEYSVPHIRFLVERKSSQRLVIKIDTIG 126

Query: 168 PNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWV 227
            +   + L+    + D V S T   GI +GV  + A++  + Y   +  + +        
Sbjct: 127 ISKTPVNLYRDKEFIDLVRSQTGIWGIFVGVLLMAALYNLVLYFGIKDRVYLIYIGYIVS 186

Query: 228 VLGYISIDFGFLSKLVN-LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYIT 286
            +  +    GF   L        +      S   ++   + F  M+L +++       ++
Sbjct: 187 AITLMGAVLGFGFYLWPKQWQLFIHEQIVFSNYGVAFFTLAFCTMFLRYHKDKCWRYKMS 246

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK-GYERAVLLIPAWI 345
            + +  +  L   S + P   A+    ++  ++      +IY+ ++ G+  A   + +WI
Sbjct: 247 IALLWLMFTLAVCSLFIPENIAAPIFFSVMVLLYITCIILIYNKLRSGFRWAKFYVLSWI 306

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVL---IVILIGFTVIQHVLATGYFSQGIFS 402
            +        M +T  L             +L   I++ +                   +
Sbjct: 307 PLIFGAAIQPMELTGVLPYTFATRHAFLVAILCEVILMAMALADRVRYQRERALYHATHT 366

Query: 403 DGERQ 407
              R 
Sbjct: 367 QQTRL 371


>gi|328887673|emb|CAJ69018.2| putative signaling protein [Clostridium difficile]
          Length = 603

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 189/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VL+
Sbjct: 179 YTDNLTKIKNQVAFENRAIEILHNA---SNKEYVLLNIDIDNFKYINDTHGYEYGDKVLI 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+    ++   + D    +  +I   +++   + T
Sbjct: 236 IVAAALSKTFNIKETCARIGSDNFVILAKYRDSL--LEDIREMLTNAIISELDMNVTQ-T 292

Query: 654 VTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG            + + M+  A +A   +K RG +    +  +          I 
Sbjct: 293 ISYCIGAYLVEIDNLGYKSINSMMDKANIAHKVSKTRGISSTVWYNENLLKQLQMENSIY 352

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E ++   P  ++    +V  EAL++W  P+ G +S  EF+ + E+   I 
Sbjct: 353 NYMYKAIENEEFHMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDEFIPLFEKSGFII 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    +     + N     I +N +   +  N   +     + +       I
Sbjct: 413 ELDFYMLKKACSFVKKTFMKKNQYTYPIAVNFSRVTIYQNSFYQRFLDTVKEYEIPFKYI 472

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      +    +L  L+K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 473 EIEVTESAFNEISQPVISILEELKKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 532

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   EK  +I++ II M+  I  +++ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 533 KETFNREKVYSIIQCIIEMSHRIGMSVVCEGIETKKDLEFLNTVKCDVGQGFYFSKPIEE 592

Query: 947 NSI 949
              
Sbjct: 593 KEF 595


>gi|325681449|ref|ZP_08160975.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
 gi|324106939|gb|EGC01229.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
          Length = 558

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 106/538 (19%), Positives = 215/538 (39%), Gaps = 28/538 (5%)

Query: 425 RDRVTTTPDIA-TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
            D    +      I    +  + G        ++ N   +   I+D  V    G + YEF
Sbjct: 33  GDICRISDVAKLEITFYENIELEGSDNRVKLVLYENGVHDDNVIVDRRVTDGGGVVIYEF 92

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
                +    W   RIR        +   I I      ++   +     A+ D  +G  N
Sbjct: 93  --FHLNGGAEWC-DRIR------NRLALMISILFVFNSRQMLKQVANRFAYIDE-SGYHN 142

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
            + F  ++ ++   +         V   ++  ++ +N+ +G   GD V+      +  L 
Sbjct: 143 LRYFCTQVESLGGKNDLQGK---AVAHFNLRHFQAVNNQIGRKNGDTVMRRFIDDLEALT 199

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                + R+ G+ F  I     ++ K+      +  ++          I ++A+ G    
Sbjct: 200 GCEIPVCRIGGDNFITIF----DADKVDAVFGHLSGAVVRFGEDYGESIMLSATAGIYIV 255

Query: 664 TSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSE 719
            +    +  S++L       Y AK  G   +  +     + +     I+     A++  E
Sbjct: 256 EADYRYAGISDLLDKVMPTSYIAKSAGREDIIFYSEELVNTKKHNATIQHIFPEALKKEE 315

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             + Y P + + D  + G EAL +W H     I   EF+ I E+   I  ++ +M++ + 
Sbjct: 316 FLVYYQPKVDVRDGRMTGAEALCRWKH-DGRLIPPDEFIPILEQNTDICKLDFYMIDHVC 374

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           RDI  W D+    P  I +N + K +LD +L + +  +I +       I+   +E+    
Sbjct: 375 RDIRQWLDEGRQLP-RISVNFSRKHILDVDLLKHLMEIIDRHNIPHHLIEAELTETTTDV 433

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM----TGSTEKR 895
             +  + ++  L++ GIS ++DDFG+  S L+ +  +P++ +K + S++       +  R
Sbjct: 434 EFKDLKRVVNGLQERGISASVDDFGSGYSSLNLIKEVPWNVIKIDKSIVPIDDDDESSPR 493

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             + + ++ MA+ +    IA+ +  +  ++ L R GCD  Q  H   PL  +   K L
Sbjct: 494 TVMFKYVVAMAREMGLECIAEGVETKTQVEILKRYGCDIAQGYHYDRPLPKDEFEKRL 551


>gi|284050931|ref|ZP_06381141.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Arthrospira platensis str. Paraca]
          Length = 347

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 174/334 (52%), Gaps = 4/334 (1%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+PNR  FLDR    +  S  + ++   V+ I++D ++ IND LG   GD +L+
Sbjct: 15  LHDSLTGLPNRSLFLDRTQQAIAKSQRNKSI-CGVLFINVDNFRLINDSLGDLAGDQLLL 73

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L  R+   ++  D +ARL  + F I+L +  +       A  ++K +  P  L   E+ 
Sbjct: 74  QLVERLKNSVRLGDTIARLGADEFAILLRNLQSVNNATIVAERIQKDLTYPFILNGHEVF 133

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDL 711
            T SIG A   +++  + ++L+N   AM  AK       + F  +      DR+ ++ DL
Sbjct: 134 KTVSIGIALADTAETRAEDLLRNGNTAMLRAKSLKNIRYQVFERTMQVGGLDRLQLETDL 193

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            LAV   E  + Y P+I L   EIVG EAL++W HP+ G ++   F+ +A+E  +I  I 
Sbjct: 194 RLAVTRGEFVMYYQPVISLTTREIVGFEALVRWQHPRQGLVTPERFLKVAKETGLIIPIG 253

Query: 772 LFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            + ++     +  W+        I + +N++ +  +  +L   +Q +I  +   PS ++L
Sbjct: 254 RWAMQEACHQLAIWQQSLKSDCQIIVGVNLSGRQFIHPDLVTEIQGIIQDSGIDPSGLRL 313

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             +ESV+M + E +  LL +L+ + I L++DDFG
Sbjct: 314 EITESVIMDDVEATIRLLHQLKNLQIKLSIDDFG 347


>gi|251773123|gb|EES53677.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Leptospirillum ferrodiazotrophum]
          Length = 1071

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 111/483 (22%), Positives = 204/483 (42%), Gaps = 23/483 (4%)

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYI--GIANDIT---EQKKSLEGILCNAFQDNLTGIP 542
            D     ++  I          L  +  GIA DI+   E     E +   A  D LT +P
Sbjct: 496 KDGHRIGILGLISREKGFFDRTLVGLLGGIAQDISFSLEFLDRQERLKVLASIDPLTDLP 555

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR +F+  L  +   +++  +L  +V ++DID +K  ND  G   GD +L S+ R I  +
Sbjct: 556 NRTAFVGELGRL---TSSQPDLALSVGILDIDGFKNWNDAFGHIEGDRLLQSMAREIPGI 612

Query: 603 LKFPDILARLSGNRFGIIL--ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
           L     LAR+ G+ FGI L      +  ++ + +  +       + L      VT S+G+
Sbjct: 613 LPKGAFLARMGGDEFGICLSSPGSIDRRRVEEISQKILDL---GLRLDGGHNLVTVSLGW 669

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENS 718
           A +     T +E+L  A+ +++ AK  G N    F     ++    ++      LA+E  
Sbjct: 670 ALFPDDAKTPAELLARADESLFAAKSSGRNRSTLFGPEIAQAMVSRVETRRSFPLALERG 729

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL-CMIKAINLFMLER 777
           E+     P + +    + G+E L++W   + G +    F+   E    +I+ +    L  
Sbjct: 730 EILFWLQPQVDVRGGRVEGVEMLVRWKREE-GMVPPGTFIPEVEREPALIRKLGCHALSE 788

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R          +P + I +NI +   L     + + A +     + + + +  +E   
Sbjct: 789 ACRLRRELSA--PLPTLRISLNIGAGHFLHPAFLDDVDAALR--GETGTGLVVEVTEGAS 844

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKR 895
           + +PER+  +   LR+ G+ L+LDDFGT  S L ++  +  D +K +GS M         
Sbjct: 845 LESPERTGRIREELRRRGLELSLDDFGTGFSSLHHVADLLPDEIKLDGSFMRSFRMRTNA 904

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A++ S + +     + ++ + I    D++   RMG   +Q    A P+  +        
Sbjct: 905 FAVVGSTLLLTDLSGSRLVGEGIEHRSDVELWLRMGGSLVQGYFFAKPMSLDDFKDFYAR 964

Query: 956 RFP 958
             P
Sbjct: 965 PLP 967


>gi|126699750|ref|YP_001088647.1| putative signaling protein [Clostridium difficile 630]
          Length = 615

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 189/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VL+
Sbjct: 191 YTDNLTKIKNQVAFENRAIEILHNA---SNKEYVLLNIDIDNFKYINDTHGYEYGDKVLI 247

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+    ++   + D    +  +I   +++   + T
Sbjct: 248 IVAAALSKTFNIKETCARIGSDNFVILAKYRDSL--LEDIREMLTNAIISELDMNVTQ-T 304

Query: 654 VTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG            + + M+  A +A   +K RG +    +  +          I 
Sbjct: 305 ISYCIGAYLVEIDNLGYKSINSMMDKANIAHKVSKTRGISSTVWYNENLLKQLQMENSIY 364

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E ++   P  ++    +V  EAL++W  P+ G +S  EF+ + E+   I 
Sbjct: 365 NYMYKAIENEEFHMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDEFIPLFEKSGFII 424

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    +     + N     I +N +   +  N   +     + +       I
Sbjct: 425 ELDFYMLKKACSFVKKTFMKKNQYTYPIAVNFSRVTIYQNSFYQRFLDTVKEYEIPFKYI 484

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      +    +L  L+K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 485 EIEVTESAFNEISQPVISILEELKKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 544

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   EK  +I++ II M+  I  +++ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 545 KETFNREKVYSIIQCIIEMSHRIGMSVVCEGIETKKDLEFLNTVKCDVGQGFYFSKPIEE 604

Query: 947 NSI 949
              
Sbjct: 605 KEF 607


>gi|218674110|ref|ZP_03523779.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 542

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/438 (24%), Positives = 191/438 (43%), Gaps = 38/438 (8%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             ++G     + I  D++ + K+ + I+     D LTG+PNR+ F   +   L       
Sbjct: 75  RRADG---GAVLIFEDVSSRVKAEQKIMHMVRFDALTGLPNREYFGQLVQEYLARHPRKS 131

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 MV+DID++K +ND+ G   GD +L ++  RI +      IL RL G++F +   
Sbjct: 132 GP-LGFMVLDIDEFKHVNDMRGHVTGDHLLCAIAARIKQA-CGNAILGRLMGDQFILFFP 189

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      +  +I     + E    V+ S G+A   SS     E    A+LA++
Sbjct: 190 HAKEPTSLELSIRRVHAAIQGHYEVDELTFLVSLSAGYAILESSAFAMDEWSVKADLALF 249

Query: 683 HAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            +K R  GG       +     ++  +K DL  AV    L+LV+ P+ R     I   EA
Sbjct: 250 ESKSRLKGGISGFEREMDGRYIEQQKLKADLREAVSAQALHLVFQPMFRADGTRIECAEA 309

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L +W HP+ G+I    F+ +AEE+ +I  I  F+L +   + +SW D      I + +N+
Sbjct: 310 LARWVHPEKGSIPPDVFIRLAEEMGIISDITRFVLFKACTECMSWPDH-----IAVSVNL 364

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +++DL D ++   +   ++ +    +R+ L  +ES ++  P+  R +L  LR  GI++ +
Sbjct: 365 SARDLRDADILSVVADALAHSGLDAARLHLEVTESCLIDEPQAVRAILAELRARGITIAI 424

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-----------AILRSIIPMA--- 906
           DDFGT  S    L                  + +             A L+++       
Sbjct: 425 DDFGTGFSS-PQLSRYAA----------RSISSRSTVPSCATSSRIPARLQAVARHGPSP 473

Query: 907 -KNIETTIIAKDIYGEID 923
            + +   I+ + +  E  
Sbjct: 474 PRELGLKIVIEGVETEEQ 491


>gi|262089594|gb|ACY24693.1| EAL domain protein [uncultured organism]
          Length = 273

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 131/265 (49%), Gaps = 3/265 (1%)

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           G   +    ++   +  + I  +L  A+   +L + Y P +++   ++VG EAL++W H 
Sbjct: 2   GSYLIFDAAMNRQVARSLHIHNELHRALAQGDLQVYYQPQVQIATGKVVGFEALLRWQHE 61

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G IS +EF+ +AE+  +I  I  +++   A+    W  Q       + +N++ +    
Sbjct: 62  TLGWISPAEFIPVAEQSGIIVQIGQWVMHTAAQQAAEWLAQ-GHSDFRMAVNLSVRQFAG 120

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L + +Q ++  T   P  ++L  +ES+ + +   +   L   + +G+ L +DDFGT  
Sbjct: 121 KDLPQLVQEVLRDTGLPPHMLELEVTESMALQSVASTLGTLNACKALGVKLAMDDFGTGY 180

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL + P D +K + + +   T+     AI R+I+ MA +   T+IA+ +     ++
Sbjct: 181 SSLAYLKHYPLDALKIDQAFVRNITQDAGDAAITRAIVAMAHSFGMTVIAEGVETVAQLE 240

Query: 926 ELTRMGCDYIQDSHVASPLGFNSIL 950
            L  +GC+  Q    + P+  +  +
Sbjct: 241 FLKSLGCEDFQGYLFSKPVPADQAV 265


>gi|307300260|ref|ZP_07580040.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
 gi|307321137|ref|ZP_07600541.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306893212|gb|EFN23994.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti AK83]
 gi|306904426|gb|EFN35010.1| diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti
           BL225C]
          Length = 664

 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 189/442 (42%), Gaps = 21/442 (4%)

Query: 521 EQKKSLEG---ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           +QK++ +    +L  +  D+LTG+ NR++   +L                 ++ID+D +K
Sbjct: 215 QQKEASDRGKALLRLSHTDSLTGLDNRRAVDQKLRDYWSDWQR-GGKSFAAILIDVDFFK 273

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIA 636
           + ND  G   GD  LV +   + E +   D  + R  G  F I+L       + AD A A
Sbjct: 274 RYNDFYGHQEGDRCLVLVANALKESIAPYDGSIGRYGGEEF-IVLARLKTREQAADLAEA 332

Query: 637 MRK-----SIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGN 690
           +R      ++          I VT S+G     +        ++  A+ A+Y AK  G N
Sbjct: 333 VRHSVETLALPHEQRRDGMSI-VTVSVGAGFTRNQIGSKLERLIHEADRALYGAKANGRN 391

Query: 691 HVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F  +      +   I   L +A++ + + LVY PI  +    +  +EAL++     
Sbjct: 392 CARLFDPNDPQSSDESENIAALLKIAIDQNLVSLVYQPIRDVATGRVDAVEALMRLKMLD 451

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             ++  S F+ IAE    I  +  +++  + +++++      +      I      L   
Sbjct: 452 GTSVPPSLFVPIAERTGAILDLGRWVIGMVCQELLASEHVPVVSVNVSPI-----QLRSP 506

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                + A++ +T  + SR+    +E + M         +  L+ +GI + LDDFGT  +
Sbjct: 507 GFAASVAAILGETGVAGSRLAFEITEGLEMEMHSDILRCIADLKTLGIRIWLDDFGTGFA 566

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            LS+L  I FDTVK + S +      K  A+LR II + +N    I+ + +  E  +  +
Sbjct: 567 GLSWLRLIDFDTVKIDRSFLHDCDTPKGKAMLRDIIGLVRNRGHKILVEGVETEEQLALM 626

Query: 928 TRMGCDYIQDSHVASPLGFNSI 949
            +   D++Q  HV  P    + 
Sbjct: 627 RQFRIDHVQGFHVGRPAPARNF 648


>gi|163785355|ref|ZP_02179990.1| hypothetical protein HG1285_11358 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879377|gb|EDP73246.1| hypothetical protein HG1285_11358 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 406

 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 180/412 (43%), Gaps = 20/412 (4%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVI-DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           FL+ L  +++       +   V  I +ID +K I         D +L  +   + ++   
Sbjct: 1   FLENLKRLIE--GVSGKVPVIVFKISNIDDFKAI------YPEDLILNKIKNVLQKVF-K 51

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             I+ +   N F ++     N  +         K I+  + +    I    ++G + +  
Sbjct: 52  NFIVGKTLTNEF-LLAGITKNLRQFDVLLDKFNKKISEGLKIGGSVIFPAFNMGISLYPK 110

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLV 723
           +     E+L  A +A Y +  +G N +  +             I + L  +++N EL + 
Sbjct: 111 TSKDPQELLNQAFIAFYESVRKGKNQIVWYSEEVQDKFERNEKIIKLLPNSIKNKELKVF 170

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI+ L D +I+G E LI+W   + G +   EF+ IAEE   IK+I  F+++   +DI 
Sbjct: 171 YQPIVSLKDRKIIGFETLIRWFSKELGYVPPGEFIPIAEETDFIKSITEFVIKNSIKDI- 229

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                      F+ +N +S++  D      +   I+K  +      +  +E   M NP+ 
Sbjct: 230 ----LKLDGEYFVSVNFSSREFEDRNFINNILKYINKYNFPSKNFVVEITERTAMKNPDY 285

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRS 901
           ++ ++  L+K    + +DDFGT  S ++YL     D VK +   +     + K + +++ 
Sbjct: 286 TKEIIQELKKNDFKIAIDDFGTGYSNMNYLIEFDIDKVKIDKDFVVEIAKSTKHLNVVKL 345

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           II ++  I    +A+ I  +  + +L ++ CD  Q    + PL F+ I  L+
Sbjct: 346 IIEISHEINALSLAEGIETKEILDKLIQLNCDEGQGYLFSPPLPFDEIKNLI 397


>gi|87200671|ref|YP_497928.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136352|gb|ABD27094.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 641

 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 103/439 (23%), Positives = 175/439 (39%), Gaps = 13/439 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E  +  +  L  A  D LTG  NR++ L RL   L  +         + ++D+D +K IN
Sbjct: 210 EAAQMAQHNLLQATIDPLTGALNRRAVLARLEEEL-TAGGRGAEPAWLALLDLDGFKHIN 268

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD VL ++  R+  L +      RL G+ F  IL    +   +   A A+  S
Sbjct: 269 DTYGHAAGDAVLAAVAARLAALERVRCY-GRLGGDEFAAILDPALSEEAVRSLADALSDS 327

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P+      + ++ SIG          +S+ L+ A+ A+Y AK +    V  F     
Sbjct: 328 LRAPVLHAGAILRLSGSIGVHRIV--GRNASDCLERADAALYKAKEQSDGTVVVFSPDDE 385

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               DR  I      +     L LVY PII +      G EA ++W       ++  +FM
Sbjct: 386 VALQDRAAITRQFNDSDLEQRLKLVYQPIIDVESGRTTGFEAFVRWSPDGQRWLAPGQFM 445

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AE       +   ++ R   +  +W D        + IN+A +D++     + +  + 
Sbjct: 446 SLAEATGRTGELTRMVMSRALAECRAWEDGR-----TLSINLAPRDVMRAGTADALARIA 500

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 P  I L  +E  ++ +P R+   L   R  G  + LDDFG   S LS +  +P 
Sbjct: 501 EDAGAPPHSIILEVTERALLDDPRRAEDQLRAFRARGFRIALDDFGAGWSSLSQVHRLPL 560

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +  L            ++ +II ++  +      + +  E        +G   +Q
Sbjct: 561 DMIKIDQELSRALVSDPGARTLVSTIISLSWQLGIDCTIEGVEEEAQAATARALGIRLMQ 620

Query: 937 DSHVASPLGFNSILKLLKE 955
             +   P     +L  L  
Sbjct: 621 GYYFGRPDEAEQVLSNLAR 639


>gi|237749397|ref|ZP_04579877.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380759|gb|EEO30850.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 708

 Score =  316 bits (809), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 189/476 (39%), Gaps = 45/476 (9%)

Query: 499 IRPMSNSNGDILRYIGI------------ANDIT-------EQKKSLEGILCNAFQDNLT 539
             P+ + +G I+ ++GI               IT       +++K L+ +   ++ D LT
Sbjct: 242 ATPLYD-DGKIIGFLGIDNPKAYTSDFSLLESITYFIQTDVKKRKILQRLEHLSYTDALT 300

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR  ++  L  +             ++ +DI+  K+ ND  G   GD ++V     +
Sbjct: 301 GLGNRNKYIQFLHKM----EEGHPKSVGIVFLDINGLKEANDKYGHDYGDQLIVKTADIL 356

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +    D + R+ G+ F    +              + +         + E +   S G
Sbjct: 357 NTVF--NDNVFRIGGDEFIAFGLDIA-REAFDRDIGRLHRLF-------DDEESCNVSFG 406

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
               +       +++  A+  MY  K    +  +   +S      V +      A++  E
Sbjct: 407 STWKSDDF-DVGDLISYADRLMYINKQSYYSSTKHGNLSYRADMTVKLLA----AIKEGE 461

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             +   P + L   E+   EAL++        I  S F+   EE  +I+ I+L++LE + 
Sbjct: 462 YLIHLQPKVNLKTMEVCAAEALVRRQDATGKLIMPSRFIPFFEEESIIRHIDLYVLENVC 521

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           + +  W        I I +N++   L+++ + E +  +  K     S I +  +ES+   
Sbjct: 522 KLLSEW-KSREYECIPISVNLSRITLMEDGIVEKLVNVCDKYEIPHSLIDIEVTESISKM 580

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
                  L   ++  G SL+LDDFG++ S  + L  I FD +K +  L+      EK   
Sbjct: 581 ETSTLISLSKSIKSAGFSLSLDDFGSQYSDFAILTLIDFDMIKIDKQLIDEIENNEKSRI 640

Query: 898 ILRSIIPMAKNIETTI--IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +L+  I + + +   +  +A+ I  E     L    C++ Q  + + P+   +  K
Sbjct: 641 LLKHSINICREMN-RVASLAEGIETEKQHLLLKEFNCNFGQGYYYSRPVDVKTFEK 695


>gi|307945272|ref|ZP_07660608.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307771145|gb|EFO30370.1| diguanylate cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 888

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 107/574 (18%), Positives = 223/574 (38%), Gaps = 29/574 (5%)

Query: 345 ILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ----HVLATGYFSQGI 400
           + + ++   + +A         I P       L  +   + + +    H +      +  
Sbjct: 313 LALVVFAAAIEVAAYGVQQVRPIIPDTSATHFLFGMTALYVLFRQIGFHKILALVSQRRA 372

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
            +  +        S D +   D        +     +      +           +    
Sbjct: 373 ENTEQMLKQVFDDSFDAIIVIDRDLTLRMASHKADAVFQREFEAGQSAQNVLPDAV---- 428

Query: 461 RDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRI-------RPMSNSNGDILRY 512
            ++ ++  D         +   E  +   D +    ++         R      G     
Sbjct: 429 IEDVKSAFDGAKETYSASKKNIELEIEGGDRRHVEYVVTTTTQQTAQRSEIGEEGHTRLA 488

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                D+T ++++ + +   A  D LTG+ NR +F       L  +  D +    V  I 
Sbjct: 489 SVTCRDVTFEREAQKRLAYLARHDPLTGLLNRNAFEMECDVRLQTA--DPDEVFCVYCIA 546

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D+   +   LG+A  DD+L S+   +   +     L  L  N + + +     +     
Sbjct: 547 VDEIDSVKASLGMAYSDDLLRSVGEDLQNCIGDDAYLGVLHDNSYAVFVPLTPETGCSEG 606

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGN 690
           +A  +   I+   +     + V+ S+G+ S     +  +S ++++ A  A+  AK     
Sbjct: 607 WAERLHAGISEDFSSNGNRVPVSISMGYVSSKKAETDTSSGQLIRKAGNALSRAKLDMRA 666

Query: 691 HVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
               F          R  ++ +L  A+E  EL + Y P +   D+ ++G+EALI+W+H  
Sbjct: 667 STIQFEPHMEEGLVRRRALEVELTNALERDELSVFYQPQVGFADKGLLGVEALIRWNHQT 726

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS +EF+ IAEE  MI  I  +++ R A D++          I + +N++ +  L  
Sbjct: 727 LGPISPAEFIPIAEESGMILEIGEWVMNRAASDLVKL-----GGDILLSVNVSPQQFLQQ 781

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + ++  + +T +   R+KL  +ES+ +G  +  ++ +  +R +G    LDDFGT  S
Sbjct: 782 SFADVVKNCLDQTGFPSERMKLEITESMFVGQTDELQMRIDAIRDLGCQFALDDFGTGYS 841

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
            LS L + PF  +K + + +     ++   A+++
Sbjct: 842 GLSQLAWFPFSWIKIDRAFVDDMATSKSHYALVK 875


>gi|301630337|ref|XP_002944278.1| PREDICTED: uncharacterized signaling protein PA1727-like, partial
           [Xenopus (Silurana) tropicalis]
          Length = 274

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 143/266 (53%), Gaps = 3/266 (1%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +     R+ +++ L LAVE  E  L Y P + L + ++  LEAL++WD P +G +S + F
Sbjct: 6   NVHDLARLDLEKALRLAVEREEFVLHYQPKVELANGQVCALEALLRWDRPGYGAVSPAVF 65

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I E   +I  +  ++++ + R I +W+  A    + + +N++   L++ +L   +   
Sbjct: 66  IPILESQGLIVTLGRWVIDNVCRQIATWQSSAVG-AVEVSVNVSGHQLIEGDLIADIAQS 124

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++        +++  +E  +M N + +   L RLR +G+ +++DDFGT  S L+YL   P
Sbjct: 125 LANAGVEAHWLEVELTEGSLMENTQHTIASLQRLRAMGVKISIDDFGTGYSSLAYLRRFP 184

Query: 878 FDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + + +    S  +  AI R+II +A +++  ++A+ +  +  ++ L   GCD I
Sbjct: 185 IDTLKIDIAFIREVTSNPQDAAITRTIIELAHSLKLRVVAEGVETQAQLEFLREAGCDQI 244

Query: 936 QDSHVASPLGFNSILKLLKERFPLVK 961
           Q    + PL    + +LL E+  LV+
Sbjct: 245 QGYLFSRPLPMKELERLLLEKRGLVR 270


>gi|260432493|ref|ZP_05786464.1| EAL domain protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416321|gb|EEX09580.1| EAL domain protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 445

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/432 (20%), Positives = 193/432 (44%), Gaps = 10/432 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R++F   +   L  ++         +V+ +D + ++ D+ G A  D +      RI
Sbjct: 5   GLLPREAFYAEMEN-LFSASRASGEDAACIVVALDDFDEVEDLHGAAAADYIAARFCDRI 63

Query: 600 GELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSIAMPINLLEREITVTAS 657
             +++  DI  RLS N F I L    +         +  ++ +   PI L    + ++ S
Sbjct: 64  LSVIRTGDIATRLSRNTFLIGLRPSRHLNLESCIQTSGRIQGTAEEPIPLNNASLYLSCS 123

Query: 658 IGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLA 714
            GF   ++ S  TS + ++ A  A+  A+  G + + ++           V ++++  +A
Sbjct: 124 AGFCLHSTVSDETSRDWIEAARAALSEAQRNGPSTIRAYSEATRRRVQVHVNLRKEFEVA 183

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  E+   + P +     ++ G EAL +W+HP+ G +S   F+  AE+  ++  +   +
Sbjct: 184 LDGGEIRPWFQPQVSTDTGDVTGFEALARWEHPQKGVLSPQVFLPFAEQSKLLVRLGQAI 243

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
                  +  W     + P  + IN +S++L D  L + ++  + +   +P R+ +   E
Sbjct: 244 RHHAFSAMRDWDRAGAVIP-RVGINFSSEELRDPTLVDRLKWELDQFDLTPDRLSVEILE 302

Query: 835 SVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
           +VV   P+      + ++  +G  + LDDFGT  S  + +       +K + S ++    
Sbjct: 303 TVVSRCPDDVISRNVSQISAMGCCIDLDDFGTGHSSFASIKRFDVKRIKIDRSFVSRSDR 362

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  ++ +I+ MA+ +    +A+ +    +   + ++G +Y+Q   +A P+ F   L 
Sbjct: 363 DPDQRQLVSAILTMAERLNLETLAEGVETPGEHAMMAQLGSNYVQGFAIAKPMPFEKTLD 422

Query: 952 LLKERFPLVKNT 963
            +      ++NT
Sbjct: 423 WITSHRIGLRNT 434


>gi|46198730|ref|YP_004397.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
 gi|46196353|gb|AAS80770.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
          Length = 686

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/447 (22%), Positives = 183/447 (40%), Gaps = 35/447 (7%)

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           D+ R IG A D   + ++LE +   A+ D LTG+PNR+   +    +          R  
Sbjct: 269 DLARLIGHALD---RLRALERLRFLAYHDPLTGLPNRRRLEEDFRLL--------RGRWA 317

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  +D+    ++N+  G   GD +L   +RR+  LL     L RL G  F  +L     +
Sbjct: 318 LCRLDLVDLYEVNEAYGREAGDALLARTSRRLQALLPREGRLYRLEGGEFLALLPG--GA 375

Query: 628 LKIADFAIAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            +   F  A+ +++  P++L   R   V    G A +     T SE+L+ A+ A+  AK 
Sbjct: 376 KEAEAFGQALGEALEAPLDLGEGRAFRVRVRAGVALFPDDANTLSELLRRADQALREAKK 435

Query: 687 RGGNHVESFRVSSFRSDRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            G                   +   L  A+   EL L   PI+ L      G+E L++W 
Sbjct: 436 AGKRWTFYSLGLGEAVRERREVLAGLEKALAEGELRLYGQPIVDLATGRPAGVEVLLRWA 495

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
             +   + +S F+ +AEE  +I  ++L++L      +           + + +N++ +  
Sbjct: 496 RGE-EVVPASRFIPVAEEAGLIPELDLYVLR-ALAQM--------TTALPLHVNLSPQT- 544

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                    + L+         ++L  +E  +      +R  L  L  +G  + LDDFG 
Sbjct: 545 -----LLDERLLLGLAPLKGRNLRLELTEHALASPGAEAR--LKELSCMGFPVVLDDFGQ 597

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             + L  L  +PF   K +   + G     K  A L++++ +++ +E  ++A+ +  E  
Sbjct: 598 GYASLRLLVGLPFSMAKVDRGFVGGIGLDPKAEAALKAVLALSRELEIALVAEGVEREDQ 657

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSIL 950
              L  +G    Q      P     +L
Sbjct: 658 WAWLRSVGYSLGQGYLWGRPAPLEEVL 684


>gi|255307145|ref|ZP_05351316.1| putative signaling protein [Clostridium difficile ATCC 43255]
          Length = 603

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 189/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VL+
Sbjct: 179 YTDNLTKIKNQVAFENRAIEILHNA---SNKEYVLLNIDIDNFKYINDTHGYEYGDKVLI 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+    ++   + D    +  +I   +++   + T
Sbjct: 236 IVAAALSKTFNIKETCARIGSDNFVILAKYRDSL--LEDIREMLTNAIISELDMNVTQ-T 292

Query: 654 VTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG            + + M+  A +A   +K RG +    +  +          I 
Sbjct: 293 ISYCIGAYLVEIDNLGYKSINSMMDKANIAHKVSKTRGISSTVWYNENLLKQLQMENSIY 352

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E ++   P  ++    +V  EAL++W  P+ G +S  EF+ + E+   I 
Sbjct: 353 NYMYKAIENEEFHMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDEFIPLFEKSGFII 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    +     + N     I +N +   +  N   +     + +       I
Sbjct: 413 ELDFYMLKKACSFVKKTFMKKNQYTYSIAVNFSRVTIYQNSFYQRFLDTVKEYEIPFKYI 472

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      +    +L  L+K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 473 EIEVTESAFNEISQPVISILEELKKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 532

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   EK  +I++ II M+  I  +++ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 533 KETFNREKVYSIIQCIIEMSHRIGMSVVCEGIETKKDLEFLNTVKCDVGQGFYFSKPIEE 592

Query: 947 NSI 949
              
Sbjct: 593 KEF 595


>gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1]
 gi|300073823|gb|ADJ63222.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 598

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 187/441 (42%), Gaps = 16/441 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND-- 581
           + LE +    + D++T +PNR   ++ L  +   +    +     + +DI   + + D  
Sbjct: 165 ERLEQLRNRGYIDHVTALPNRARLMEVL-RVRGHARPGASGADAAVAVDICPREYLFDMV 223

Query: 582 -VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             LG    +  L+ ++R +  +L     L R++   F  +   E    +       + + 
Sbjct: 224 KALGWDYAEGFLMEVSRTLRRVL-GTLPLYRVTTTTFVYL--DETAPAQRRRRIADIEQR 280

Query: 641 IAMPINLLEREITVTASIGFASWTSS---KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
               +        +  +IG                +L   +++            ES   
Sbjct: 281 FTPALEFQGIPHLLDIAIGVLPMEEDVSGGDVVRSLLTVIDVSREEGVS--PRLFESVHA 338

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              R    ++           EL L + P +RL D   VG+EALI+W HP  GNI    F
Sbjct: 339 EKQRYAFWLLAALPMALTTPDELVLHFQPKVRLRDGACVGVEALIRWHHPIHGNIPPDVF 398

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE+   I+ +  ++L ++   +  W        + +  N +++D   +EL E +   
Sbjct: 399 IPLAEKTGQIRQVTAWVLRQVVAQVARWLKSGR--ALPVAFNASARDFDSDELRELLAQQ 456

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +      P+ I++ F+E  +  +P++ R  +  LR++G+ + +DDFG   S LSYL  IP
Sbjct: 457 LKLHKVPPALIEIEFTEHAMANHPQQVRQRVQALRELGVKVAIDDFGAGFSNLSYLKNIP 516

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + S +      E    I+ SI+ +A N+  +++A+ +  E     L  +GCDY 
Sbjct: 517 ADTMKIDRSFIHRLLDDEADQLIVPSILHLAHNLGFSVVAEGLESERTATLLRHLGCDYG 576

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q   +A P+    +   L+ R
Sbjct: 577 QGYAIARPMPLAELEAWLERR 597


>gi|17228725|ref|NP_485273.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130577|dbj|BAB73187.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 403

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 140/308 (45%), Gaps = 6/308 (1%)

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
           +      +G   + +   T +E+L      +          +    +        +++  
Sbjct: 89  DFRQGMDMGADDYLTKPFTRAELLSAVMNRLERQATLKKYLINHNGIKVSSPKTQLLEMS 148

Query: 711 LCLAVENS---ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           L   ++     E  + Y PI+ +   +IV  E+L++W+ P+ G +S SEF+ +AE   +I
Sbjct: 149 LHKVIQQQKFPEFEVQYQPIVDIASGKIVAAESLLRWNSPELGFVSPSEFIPLAESTGLI 208

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  +++  +   I SW D      + I +N+++ +    +L + +   +     +P  
Sbjct: 209 VPIGQWVIANVCHQIKSWHDSGVDF-LTISVNLSAMEFNKPDLIQRITEALKSNNIAPHY 267

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ES++M +   +   +  L+ +G+ L +DDFGT  S L YL  +P +T+K +   
Sbjct: 268 LEIELTESMIMQDLNSAIFTMNELQSLGVRLAIDDFGTGYSSLIYLKNLPVNTLKIDRYF 327

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    + +   AI +++I MA N+   ++A+ +  E ++  L +  CD +Q    + PL 
Sbjct: 328 IHNVAKDKQKSAITKALIEMAHNMNMQVVAEGVETESELYFLKQNKCDAMQGFLFSRPLP 387

Query: 946 FNSILKLL 953
                  L
Sbjct: 388 AVEFENFL 395


>gi|194446115|ref|YP_002041394.1| mase1 domain family [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194404778|gb|ACF65000.1| mase1 domain family [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 998

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDAIAEAQPLDLLLN 991



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|302670098|ref|YP_003830058.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302394571|gb|ADL33476.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 722

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 191/446 (42%), Gaps = 18/446 (4%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           +R++G   D  E  K+ +    +   D+LTG+ N       L  + +     D++   ++
Sbjct: 3   MRHVGDFMD--ELSKAFQTQKDD--YDDLTGLLN---LNGILRCVNESKNKGDSIYSVII 55

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +++  +K  N   G A G++ L  L+  I   +   +++AR SG+ + IIL   N+  K
Sbjct: 56  YLNVMNFKAFNQQYGFAGGNEFLKGLSDEIQ-HIFSDEMIARTSGDHY-IILSKSNDKEK 113

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I      ++++        ER + +    G      S+     M+  A++A         
Sbjct: 114 IIQKIDKIQEAARKY----ERGLKMRVKAGIYLSDGSETDPVFMIDRAKIACDDIIRVYD 169

Query: 690 NHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
                +     + + +   + ++   A +     + Y   +R +  ++ G EAL +W  P
Sbjct: 170 RDYNIYDDELKKKNELRQYVIDNFEDAFKEHYFKVYYQKEVRALTGKVCGYEALARWIDP 229

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +G IS   F+ + EE+ +I  ++L+++E++  D+ S   +  M    + +N++  D   
Sbjct: 230 IYGMISPGVFVEVLEEVHLIHKLDLYIIEQVCADLKS-DIEFGMALEPVSVNLSRLDFEL 288

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +     K       + +  +ES +          + R R  G  + +DDFG+  
Sbjct: 289 CDIKAEIDKCREKYEIPTKLLNIEITESAIASGESFLGDQIKRFRDSGYQVWMDDFGSGY 348

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+ L    FD +K +   +    + +K   I+ +II MAK ++   +A+ +  +   +
Sbjct: 349 SSLNNLKIYEFDVLKIDMDFLRTFDTNKKTQVIIATIINMAKELDIHTLAEGVETKEQYE 408

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L R+GC+ +Q      P      ++
Sbjct: 409 FLRRIGCEKMQGYLFGKPKPLEEFVR 434


>gi|253688670|ref|YP_003017860.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755248|gb|ACT13324.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 592

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 189/435 (43%), Gaps = 17/435 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNRQ  +D ++ I D+      L   +  IDI    ++   LG+   + +L  +
Sbjct: 167 DAVTLLPNRQRLIDDISRITDIHERY--LLILIDTIDISYAYEMGCALGMPTVEGLLKDI 224

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF---AIAMRKSIAMPINLLEREI 652
              +   L  P+ +   +  RF +++ SEN    +A+    A  + +SI   I L     
Sbjct: 225 GIFLRLSLSSPENIYCAAVGRFALLVKSENKDQVLAELDACAERIHESITSHIPLK---- 280

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDL 711
            +   +G+  +         +L+ +  A+  A          +      +     +  +L
Sbjct: 281 -LEFFVGYTEFQIPANDPQRILRESMSALRAAITTNTRQFAYNQEADKAQQIAFTLLNEL 339

Query: 712 CLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
              ++N+   LYLVY P + +    ++G EALI+W HP  G I   +F+ +AE   +++ 
Sbjct: 340 ADVLQNNKPGLYLVYQPKLSIKTNTVIGAEALIRWRHPDLGEIYPDQFIPLAEGTTLMRP 399

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++    A  +  WR Q       + IN+++++  +N+    +  ++     +P  I 
Sbjct: 400 LTDWVTREAACQVKQWRQQGLH--FPVSINVSARNFSENDFIPRLITILENHGLTPQDID 457

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+  +     +   +  L+++G ++ LDDFGT  S LSYL  IP   +K + SL+ 
Sbjct: 458 IECVETQKIIESTETLATIQTLQQLGFTIALDDFGTGYSNLSYLRNIPSTVIKLDKSLIK 517

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 K   I+ SII M   +   ++A+ +  +  +  L   GCD +Q  + + P+   
Sbjct: 518 DIKTDHKSRVIVESIISMLHKLNYIVLAEGVENKETLDYLACFGCDEVQGYYFSRPIPPE 577

Query: 948 SILKLLKERFPLVKN 962
           +    L  R      
Sbjct: 578 AFTTWLTTRSSQTST 592


>gi|212633277|ref|YP_002309802.1| GGDEF domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554761|gb|ACJ27215.1| GGDEF domain protein [Shewanella piezotolerans WP3]
          Length = 873

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 106/428 (24%), Positives = 207/428 (48%), Gaps = 5/428 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I ++K+    ++ +A  DNLTG+PNR  F++RL+  +         +  V+ ID+D++K 
Sbjct: 434 INQRKRIERQLVHDAKHDNLTGLPNRAMFMERLSQSIKHVRRHTLDKFAVLFIDMDRFKL 493

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG   GD  L+   +R+   ++  D+LARL G+ F I+L S  +     D A  + 
Sbjct: 494 LNDTLGHLEGDRFLIETAKRLKLCIRNNDMLARLGGDEFVILLDSVGSQKDAEDVAERIL 553

Query: 639 KSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  +++  +ASIG A    ++  TS  +L+NA+ AMY AK +G      F  
Sbjct: 554 LELSRPYTLANQQLNSSASIGLAMSGQNNSDTSESILRNADSAMYQAKSKGKGCYVLFAQ 613

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +      + ++ +L +A++  +L L Y PI+ L  E ++  E  + W HP  G +   
Sbjct: 614 GNNKQHVQELELENELKIALDKGDLQLSYLPIMELESERVIAFEPRLFWRHPTLGKVKQL 673

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   IAE   ++  ++ + L     D     +Q       I ++I+S+ L        ++
Sbjct: 674 QLNNIAEHCNLLIELDNYKLAM-INDGFHSLEQRFGVDFHIQVSISSQHLNHKHALRALK 732

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + +  +  +++ L F+E   + N         +L  + + L +D +G+  S +S L +
Sbjct: 733 NKVKQCSFDLTKLTLFFNEKDFVQNTNNHINAFEQLNGLNVQLGIDGYGSAHSAISSLTF 792

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P  ++K + S  T   +E+ + I+++    A+ +E  I A  +  +   + L+ +G + 
Sbjct: 793 LPIQSLKLDSSYATHLESEQHLKIIKAYYSAARALELEIFAVGVSTKAHCQLLSDIGFEK 852

Query: 935 IQDSHVAS 942
            Q   +  
Sbjct: 853 GQGIALGK 860


>gi|254518177|ref|ZP_05130233.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226911926|gb|EEH97127.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 740

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 108/450 (24%), Positives = 195/450 (43%), Gaps = 12/450 (2%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I         I    K  + I    F D LT   N Q    RL    +     D    ++
Sbjct: 300 ITFIAAAGIFILSYNKYQKNIFHLIFIDELTKEKNYQYL--RLN--FENMKQHDRKNKSL 355

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +V DIDK+  IN + G  +GDDVL  + R   E+L   D L + + + F  I+  + +  
Sbjct: 356 VVFDIDKFNVINIMYGTNIGDDVLKYIVRIFKEML-PNDELYKDNADGFIGIIYHD-DKE 413

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +I      +   I   I    + I +  S+G  S   +  +   +  NA +A    K + 
Sbjct: 414 EIVKKLNMLDYRIKKDIET-NKVIPIKISMGICSL-DNSESLHRIYSNALIAKREIKDKM 471

Query: 689 GNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
               + F   + +   D   I+ +   A++N E  + Y P   + +++I G EALI+W  
Sbjct: 472 NQSYKFFDERNKKTIIDNQKIESEFLEALKNDEFEVWYQPKYDMRNKKICGAEALIRWRK 531

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I   +F+ + E    I  ++  +++++ +DI             I IN++   L 
Sbjct: 532 QDGSLIPPDKFIPVFENNGQIIQLDEEVIKKVCKDIKEMSYLGYEIH-PISINLSRLHLE 590

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
              + + ++AL+ +     S+I    +ESV + N ++   ++  L ++G  + +DD+GT 
Sbjct: 591 HQGIVKRIEALLKEYDIDTSKIAFEITESVFLNNNDKLNNIVDELHRLGFKVEMDDYGTG 650

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            S LS +    FDT+K + S +      ++  I++S I MAK +   IIA+ I  +  ++
Sbjct: 651 ISALSSISESSFDTLKLDKSFIDNIGNLKMDIIIKSTIDMAKKLNMKIIAEGIETQDQVE 710

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            L    C   Q  + + P+  N    LL +
Sbjct: 711 FLVANNCFIAQGYYFSKPISKNDYFALLSK 740


>gi|291619774|ref|YP_003522516.1| YciR [Pantoea ananatis LMG 20103]
 gi|291154804|gb|ADD79388.1| YciR [Pantoea ananatis LMG 20103]
          Length = 588

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 197/436 (45%), Gaps = 15/436 (3%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               +F D +T +PNR   +  +  +   +         +  +DI +  +++   GIA  
Sbjct: 160 WNLASFTDLITLLPNRPRLIRDMQQLAVNNPDRRFRLILIDCLDIPQAYELSRTFGIAPV 219

Query: 589 DDVLVSLTR----RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           +++L  +      R+   L+  D+L   +  RF +I          +     +  S+   
Sbjct: 220 ENLLRQIAGLVGVRLQ--LQSDDMLYSFAPGRFALIQPYLGGYNAQSTV--EVLTSLKAD 275

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSD 703
           +      I +    G   + S  I ++E+++ A  A++       G         S R++
Sbjct: 276 LA-DNITIDIDVYTGETEFVSRDIDANEVVRQAVSALHECIHQNMGAMTFDHAYDSRRTE 334

Query: 704 RVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +I  DL  A++  E LYL Y P + L   + VGLEALI+W HP+ G +  ++F+ +A 
Sbjct: 335 DFLIMNDLAQALKKDEGLYLAYQPKVCLKTGKTVGLEALIRWHHPERGELFPADFIPLAI 394

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  ++++R+   +  W ++     I + +N++ +D    E   G+ + +    
Sbjct: 395 KTNLISVLTDWVIDRVIIQLKQWNNEF--ELIPVSVNVSERDFSRPEFASGLASKMQAAA 452

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + +   E+ ++   + +   L  L+  G  ++LDDFGT  S +SYL  IP D +K
Sbjct: 453 LPTALLGIECLENELITESDIAINGLEALKAQGFVISLDDFGTGYSNISYLQEIPLDVIK 512

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL+           I+RSII M K +  T++A+ +  E  +  L + GCD IQ    
Sbjct: 513 VDMSLIGRMDGDHASRIIVRSIIMMLKELNYTVLAEGVETEATLSLLKQYGCDQIQGYFF 572

Query: 941 ASPLGFNSILKLLKER 956
           + PL  + I   L ++
Sbjct: 573 SKPLPASDIEHWLLQK 588


>gi|332306723|ref|YP_004434574.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174052|gb|AEE23306.1| diguanylate cyclase/phosphodiesterase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 767

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/777 (15%), Positives = 261/777 (33%), Gaps = 54/777 (6%)

Query: 210 YMVNRSSMLIPTFAMAW--VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA-LSSSLI 266
           Y   R   L  T   AW    L  + +    L  +  + S    +    + +  ++    
Sbjct: 14  YFYLRDDNLPVTNVEAWRISALRIMLVSIILLCAIFVIQSAWRSVIERVAYVIPMALVFY 73

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           I L   L  +R            +  +A +   + +   V + +  I + S        +
Sbjct: 74  IALSSLLLISRRFYTFSAYCLIALIIVAAVCFNATHQHQVLSMLGPIVMYSTPFVAFILL 133

Query: 327 IY----HGMKGYERAVLLIPAWILIFIWFIGLWMAI-TKRLDNDIIQPALVGGLVLIVIL 381
            +      +      + ++   + +  +     +        + I+       + L +  
Sbjct: 134 GWKVGVLCILLNIAPLYVLINQLTLADYITPFPVQEHANYYLHVILFVFFNVCIPLAIAR 193

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
                 +        +  +    +      + +       D  R  +        +L   
Sbjct: 194 SSIAAKRGNQFNIERNNILHKQAQLYHALFVEARTAKIIIDQKRKIIEANDAAYALL--L 251

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
           S      + N +  +                     +L      R    +     +  +P
Sbjct: 252 SNLPTPCVGNEIESVFPE------------FTVNSSKLVV---NRTLGAKMKVFELSAQP 296

Query: 502 MSNSNGDILRYIGIANDITEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +++        +    D++ +           +        D   G+PNRQ   ++    
Sbjct: 297 INDEQ----HTMVTIQDVSAKALLHKTLAVQTQVRQRQKLYDESAGLPNRQWLENK---- 348

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           + L     +    V  I I+    I    G      +L  +   + + +     +A L  
Sbjct: 349 IALHDDQASGTLFVCAIKINNAHFIEQKYGFLYLPKILKKVAEILNQNVGERGFIAILDK 408

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
              GI L     + K       +  S+   + + +  + +    G A+   S ++ ++++
Sbjct: 409 YTLGIALT-IVEAEKTKSAIHHIIASLPRVVQIQQLSMHIDCKAGVAN-NQSDVSVNQLV 466

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
            NA  A+    +    +           +   I   L  A+ N ELY+ Y P +R  D  
Sbjct: 467 NNALHAV--TVNDALINYYETGSHQRFIEHQEISILLNEALTNEELYVDYQPKVRG-DGT 523

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           ++G+EAL++W+ P  G +S   F+ IAE+  ++  +  +++  +   I  W+ Q     +
Sbjct: 524 LIGMEALLRWNSPVIGRVSPGVFIPIAEQSGLVLKLTHWLINHVCAQIKQWQGQGLQ-AL 582

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            + INI+  DL   +  + +   + +    P  ++L  +ES    N   +   +  L   
Sbjct: 583 PVAINISGPDLDQTDFKKFLINCVVEHDIKPQLLELELTESAKTQNIPDAIETVRYLASF 642

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT 912
           G  +TLDDFG   S LS L   P   VK +   +       K   ++ +I+ M +  +  
Sbjct: 643 GFCITLDDFGVGYSGLSKLTNFPVQRVKIDRQFIKNIQRDSKNAQVVEAIVAMCRVFKID 702

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE------RFPLVKNT 963
           ++A+ +    ++  L  MGC   Q    A P+G + I KLL        + PL   T
Sbjct: 703 VLAEGVEDLREVDCLLAMGCASFQGFAFAKPMGKDQIAKLLNTSLMPNLKLPLTSQT 759


>gi|84499796|ref|ZP_00998084.1| diguanylate cyclase, putative [Oceanicola batsensis HTCC2597]
 gi|84392940|gb|EAQ05151.1| diguanylate cyclase, putative [Oceanicola batsensis HTCC2597]
          Length = 504

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 189/429 (44%), Gaps = 10/429 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+P R S      T +  + +D +      +I ID +    +  G    D +L   
Sbjct: 63  DGVTGLPLRGSLETAARTTMSGTLSDRSAT-ACFMIAIDDFDVTTERYGRTAADHILQKS 121

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREIT 653
             RI  +L+  D+  R+    FGI L      +       A  ++ ++  P+ L    I 
Sbjct: 122 ADRIRSVLRDQDVTCRIGSASFGIALAPVMRLDIESAIHMASRLQAALEEPVVLDNTVIY 181

Query: 654 VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KED 710
           ++ S+GF     +   +   ++  A  A+  A     + + S+     R++R      ++
Sbjct: 182 ISVSVGFCLGSRAPDPSGEGLIAAAATALAEASRNAPSAIRSYSDELRRTERSRHIFADE 241

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A+EN E++  + P +      I G EAL +W+HP+ G I+  +F+ + E    +  +
Sbjct: 242 AAAALENGEIHPHFQPQVSTDTGRITGFEALARWNHPERGPIAPMDFLPVLESAGKLARL 301

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ML R    + +W D     P  + +N +  +L + +L + +Q  + +   +P R+ +
Sbjct: 302 GEVMLSRSLTALRAWDDAGLDVPG-VAVNFSPDELRNPKLIDYVQWELDRFDLAPGRLSV 360

Query: 831 SFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              E+V+  +PE      +  L ++G  + LDDFGT  + ++ +       +K + S + 
Sbjct: 361 EVLETVIAASPEDVVARNVNGLARLGCRIDLDDFGTGHASIASIRRFAVQRIKIDRSFVM 420

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 ++  ++ +I+ MA+ +    +A+ +    +   L ++GC ++Q   +  P+ F 
Sbjct: 421 KVDRDAEQQRMVAAILTMAERLGLDTLAEGVETPGEHAMLAQLGCGHVQGFGLGRPMPFE 480

Query: 948 SILKLLKER 956
           +    ++ +
Sbjct: 481 ATADWIRAQ 489


>gi|332307147|ref|YP_004434998.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174476|gb|AEE23730.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 569

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 206/523 (39%), Gaps = 25/523 (4%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR------IRPMSNSNGDILRYIGIAN 517
            +  L     +    +  +FR+           I+      I  + +   D    IG+ N
Sbjct: 45  AQEGLAIMQEHNIQVVLSDFRMPHMSGAELIEQIKSTYPDVISMVLSGFADFDSAIGLLN 104

Query: 518 DITEQKKSLEGILCN--------AFQDNLTGIPNRQSFLDRLT---TILDLSATDD---N 563
                K   +             AF +  T + N++             + +  D     
Sbjct: 105 SGAAHKFLRKPWNNQDLIDEIGGAFTEYHTRLLNKRVLEGEHNPEYYAFEQAVRDQFEMQ 164

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ + I  Y  +    G  +   +L  +   +   L            +  II+  
Sbjct: 165 QEFCLVSLKIKDYDFLEQHAGPNIFKGLLTEIRGLVNSELPQGSQTFAFDNGKIFIIIPD 224

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   I     A+   +  P    +  + +   +G+A   S   + + +L+N   A   
Sbjct: 225 YESEAIIHSRLSAINHKLNEPNTQRQGCVKINCVMGYALAPSDGDSPTSLLENLRCAFSV 284

Query: 684 AK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
               +         +   +  ++ IK  +  A+  ++ YL + P + L +++I   E LI
Sbjct: 285 DNVEKERLCRFDSALRDVQQRQLKIKNSINGALRENQFYLHFQPKVHLPEQKIDSAEILI 344

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W H + G I  +EF+ ++E    I+ I  +++ +  + I      +      + INI++
Sbjct: 345 RWQHKELGWIPPNEFINLSELDGQIEQIGEWLITQSVKMIAELHQFSPDLK-RVAINISA 403

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             L +N + E    L+ +    PS I+L  +ES ++ + E++  +L  L+ +G+S+ +DD
Sbjct: 404 CQLANNSVVEQFARLLEQYALPPSLIELEITESCLIQDFEQTLKILQALKSLGLSIAMDD 463

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S  +YL  +P D +K +  L+ G    +   +++  +I M   +  +++A+ +  
Sbjct: 464 FGTGYSSFAYLAKLPIDVLKLDKVLVDGIEGCKEIQSMIAGLITMCHELGISVVAEGVEV 523

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              +  L   GCDYIQ  H +  L      ++L ++ P   N+
Sbjct: 524 AGQVDLLKLYGCDYIQGFHFSKALPKPEFEQILLQQ-PFNTNS 565


>gi|291560221|emb|CBL39021.1| diguanylate cyclase (GGDEF) domain [butyrate-producing bacterium
           SSC/2]
          Length = 938

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 170/429 (39%), Gaps = 13/429 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +   F + +  I+  + T D     ++  D + +K  N   G  +GD VL  
Sbjct: 497 HDTLTGLISFGRFHEEVERIILANKTSD---YMMIYTDFENFKYFNYKYGYTLGDQVLKD 553

Query: 595 LTRRIGELLKFPDILA--RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               I    +    L   R+  ++F +   + +   +         K     +   + + 
Sbjct: 554 FCSFIIGKTEEKHNLYFTRVVSDQFLMFRTASHEKDEYQGIIEETEKINEEFMLRQKEKF 613

Query: 653 ---TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
               V    G    T    ++S  +  A       K      V  +     +   +   I
Sbjct: 614 PKSNVVLRTGIYYVTPECRSTSYAIDAANYVRQKVKGGEKGSVRFYDDEMQKQRELENEI 673

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             D+  A+E  +  + + P   +   EI G EAL++W+      +S + F+ + E    I
Sbjct: 674 VNDMKEAMEQKQFKVYFQPKYSIKSHEITGAEALVRWERDNGTVLSPNAFIPVYENNGKI 733

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             ++ ++ E +   I           + I IN +S    D +       ++ K    P+ 
Sbjct: 734 IELDFYVFETVVEFIAENLKA-GREQVPISINASSFHASDPQTINTYINILKKYNVDPAM 792

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E+ V+   E  R L    +  GI   +DDFG+  S+L+ +  IP D +K +   
Sbjct: 793 VEIELTETAVVSEYESVRKLFDSFQLHGIKTAIDDFGSGYSVLNTIVDIPVDVIKIDRGF 852

Query: 888 MTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +T   E    I  L+ +I M +N+   II + +  +  I+ L ++GCD IQ    + PL 
Sbjct: 853 ITSCLETDRGIYFLKHLIDMIRNLGYQIICEGVETDEQIEILRQIGCDEIQGYWYSKPLK 912

Query: 946 FNSILKLLK 954
                +LL+
Sbjct: 913 MEDYKELLQ 921



 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 23/331 (6%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDI---ATILGLASGSMHGPIRNWL 453
           Q      E+ S  +  S   ++++ +  D +           TI G           +  
Sbjct: 5   QVNRKKIEKLSTVLNNSRIKIFEYLVDEDTLVVYNNKFHIEKTIAGYM------DYIDNK 58

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             IH  DR+  + I              E R    +      ++    + N +G +   I
Sbjct: 59  SKIHPEDREKIKQIYKEAKEA-----TVEIREFGENGDIKHSVLEFTKIVNEDGKLT-LI 112

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G   DITEQ+K  + +   A +D+LTG+ N+      +   L+           ++V+D+
Sbjct: 113 GSTRDITEQRKQEKKLKERARKDSLTGLYNQVYGKKCINKYLNRKK--PFDSCGMIVLDV 170

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIAD 632
           D +K +ND  G   GD VL  L   + E+ +  D IL R  G+ F I +    N   +  
Sbjct: 171 DCFKLVNDNYGHLFGDKVLARLAMLLKEVFRDNDSILMRAGGDEFVIFVKDILNIELVRK 230

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGN 690
               M+K         +   T+T S G      +    T  ++ +NA++A+Y AK RG N
Sbjct: 231 NVELMQKI--RDFQFGKTGCTITCSAGCCYLPENVSGYTYDQLFENADIALYKAKERGKN 288

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                      S  +  +E     +E     
Sbjct: 289 CYVYCDSLQHFSSMIAEQEKQEEMLEARYFQ 319


>gi|167768200|ref|ZP_02440253.1| hypothetical protein CLOSS21_02756 [Clostridium sp. SS2/1]
 gi|167709724|gb|EDS20303.1| hypothetical protein CLOSS21_02756 [Clostridium sp. SS2/1]
          Length = 944

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/429 (20%), Positives = 170/429 (39%), Gaps = 13/429 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +   F + +  I+  + T D     ++  D + +K  N   G  +GD VL  
Sbjct: 497 HDTLTGLISFGRFHEEVERIILANKTSD---YMMIYTDFENFKYFNYKYGYTLGDQVLKD 553

Query: 595 LTRRIGELLKFPDILA--RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               I    +    L   R+  ++F +   + +   +         K     +   + + 
Sbjct: 554 FCSFIIGKTEEKHNLYFTRVVSDQFLMFRTASHEKDEYQGIIEETEKINEEFMLRQKEKF 613

Query: 653 ---TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
               V    G    T    ++S  +  A       K      V  +     +   +   I
Sbjct: 614 PKSNVVLRTGIYYVTPECRSTSYAIDAANYVRQKVKGGEKGSVRFYDDEMQKQRELENEI 673

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             D+  A+E  +  + + P   +   EI G EAL++W+      +S + F+ + E    I
Sbjct: 674 VNDMKEAMEQKQFKVYFQPKYSIKSHEITGAEALVRWERDNGTVLSPNAFIPVYENNGKI 733

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             ++ ++ E +   I           + I IN +S    D +       ++ K    P+ 
Sbjct: 734 IELDFYVFETVVEFIAENLKA-GREQVPISINASSFHASDPQTINTYINILKKYNVDPAM 792

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E+ V+   E  R L    +  GI   +DDFG+  S+L+ +  IP D +K +   
Sbjct: 793 VEIELTETAVVSEYESVRKLFDSFQLHGIKTAIDDFGSGYSVLNTIVDIPVDVIKIDRGF 852

Query: 888 MTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +T   E    I  L+ +I M +N+   II + +  +  I+ L ++GCD IQ    + PL 
Sbjct: 853 ITSCLETDRGIYFLKHLIDMIRNLGYQIICEGVETDEQIEILRQIGCDEIQGYWYSKPLK 912

Query: 946 FNSILKLLK 954
                +LL+
Sbjct: 913 MEDYKELLQ 921



 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 23/331 (6%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDI---ATILGLASGSMHGPIRNWL 453
           Q      E+ S  +  S   ++++ +  D +           TI G           +  
Sbjct: 5   QVNRKKIEKLSTVLNNSRIKIFEYLVDEDTLVVYNNKFHIEKTIAGYM------DYIDNK 58

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             IH  DR+  + I              E R    +      ++    + N +G +   I
Sbjct: 59  SKIHPEDREKIKQIYKEAKEA-----TVEIREFGENGDIKHSVLEFTKIVNEDGKLT-LI 112

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G   DITEQ+K  + +   A +D+LTG+ N+      +   L+           ++V+D+
Sbjct: 113 GSTRDITEQRKQEKKLKERARKDSLTGLYNQVYGKKCINKYLNRKK--PFDSCGMIVLDV 170

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIAD 632
           D +K +ND  G   GD VL  L   + E+ +  D IL R  G+ F I +    N   +  
Sbjct: 171 DCFKLVNDNYGHLFGDKVLARLAMLLKEVFRDNDSILMRAGGDEFVIFVKDILNIELVRK 230

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGN 690
               M+K         +   T+T S G      +    T  ++ +NA++A+Y AK RG N
Sbjct: 231 NVELMQKI--RDFQFGKTGCTITCSAGCCYLPENVSGYTYDQLFENADIALYKAKERGKN 288

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                      S  +  +E     +E     
Sbjct: 289 CYVYCDSLQHFSSMIAEQEKQEEMLEARYFQ 319


>gi|255101269|ref|ZP_05330246.1| putative signaling protein [Clostridium difficile QCD-63q42]
          Length = 603

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 189/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VL+
Sbjct: 179 YTDNLTKIKNQVAFENRAIEILHNA---SNKEYVLLNIDIDNFKYINDTHGYEYGDKVLI 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+    ++   + D    +  +I   +++   + T
Sbjct: 236 IVAAVLSKTFNIKETCARIGSDNFVILAKYRDSL--LEDIREMLTNAIISELDMNVTQ-T 292

Query: 654 VTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG            + + ++  A +A   +K RG +    +  +          I 
Sbjct: 293 ISYCIGAYLVEIDNLGYKSINSIMDKANIAHKVSKTRGISSTVWYNENLLKQLQIENSIY 352

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E ++   P  ++    +V  EAL++W  P+ G +S  EF+ + E+   I 
Sbjct: 353 NYMYKAIENEEFHMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDEFIPLFEKSGFII 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    +     + N     I +N +   +  N   +     + +       I
Sbjct: 413 ELDFYMLKKACSFVRKTFMKKNQYTYPIAVNFSRVTIYQNSFYQRFLDTVKEYEIPFKYI 472

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      +    +L  L+K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 473 EIEVTESAFNEISQPVISILEELKKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 532

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   EK  +I++ II M+  I  +++ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 533 KETFNREKVYSIIQCIIEMSHRIGMSVVCEGIETKKDLEFLNTVKCDVGQGFYFSKPIEE 592

Query: 947 NSI 949
              
Sbjct: 593 KEF 595


>gi|309776645|ref|ZP_07671621.1| putative sensory box sensor/GGDEF/EAL domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915605|gb|EFP61369.1| putative sensory box sensor/GGDEF/EAL domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 706

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 95/469 (20%), Positives = 189/469 (40%), Gaps = 42/469 (8%)

Query: 505 SNGDILRYIGI------ANDIT-------------EQKKSLEGILCNAFQDNLTGIPNRQ 545
            + +I  +IG+       ND+T             E++  L+ +   ++ D LTG+ NR 
Sbjct: 255 KDHEITGFIGVDNPKHNMNDLTLLSSLTYFVKNDLEKRHMLQQLERMSYVDLLTGLYNRN 314

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
               R   +L     D      V+ +D++  K++ND  G   GD ++    R + ++   
Sbjct: 315 ----RYNCVLQEMEDDHPHSLGVVYVDMNGLKELNDSYGHDYGDFMIQETARILLQVFDK 370

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
                R+ G+ F I+    +               I     LL++   +  SIGF  W +
Sbjct: 371 DA--YRIGGDEFIILCRDVSE--------QTFHSRIDALHQLLKQHQNINVSIGF-FWNA 419

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
                   +  A+  MY  K            S    +  ++  +L   ++     +   
Sbjct: 420 GDFDIRHEIARADERMYIEKQE----YYDSMTSRRYDNHALLARNLLKEIQEGRFEVYLQ 475

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P   +    ++G EAL++           ++F+ + EE  +I+ I+ F+LE   + + SW
Sbjct: 476 PKFEIQTNRLIGAEALVRKREADGKLHRPAQFLQMYEEENIIRHIDFFVLETACKTLQSW 535

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
           ++Q     + + +NI+   L + ++ + +  +  K   SPS + +  +E       +  R
Sbjct: 536 KEQNLQE-LKLSVNISRITLQEYKVVDKIHDICKKYSISPSLVDIEITEHHSREMEQIIR 594

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSII 903
            +   L K G ++ LDDFG + + L+         +K + SL+      ++  +I+   I
Sbjct: 595 SVEQELMKQGFTVVLDDFGAQFANLASQTEFRSHKLKVDRSLVGNMENNQESKSIVHHTI 654

Query: 904 PMAKNI-ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            M   +  T++IA+ I  +  +  L    C+Y Q  + + PL      K
Sbjct: 655 DMCHELENTSVIAEGIENKAQLDILEEFACEYGQGYYFSEPLSIEEFRK 703


>gi|325262988|ref|ZP_08129724.1| putative diguanylate cyclaSe/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Clostridium sp. D5]
 gi|324032082|gb|EGB93361.1| putative diguanylate cyclaSe/phosphodiesterase (GGDEF & EAL
           domains) with PAS/PAC sensor(s) [Clostridium sp. D5]
          Length = 555

 Score =  315 bits (807), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 107/542 (19%), Positives = 211/542 (38%), Gaps = 31/542 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HINDRDNFRTILDSFVGYRRGRLQ 480
           D+ R+    + ++    G +   ++  I  W   I +  DR  +   L   +  ++G   
Sbjct: 27  DLQRNLYYISDNMKDDFGFSDNIVYNLIDAWGEKISNKQDRFLYHQDLSHIMEQKKGVHS 86

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             +RV   +    W+  R     + +    L + G  +           +  +   D +T
Sbjct: 87  LRYRVTDKNGNSTWVHCRGIVKWSEDKSTPLFFSGCVS----------RLDGDFSLDAVT 136

Query: 540 GIPNRQSFLDRLTTIL-DLSATDDNLRPTVMV-IDIDKYKKINDVLGIAVGDDVLVSLTR 597
           G P       R  + L DL+A       T++V   ++ +  IND  G A GD +L +++ 
Sbjct: 137 GFP-------REQSALNDLAARAGKNSTTLIVGFGLNHFTYINDSKGRAAGDTLLQAISN 189

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            + E L       RL G RF  +     +          +R+SI       +      AS
Sbjct: 190 CLLEKLGSCFTFYRLDGIRFMAVSKQLISYADGDAVEN-LRQSIEECYTRQKLSTKQAAS 248

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAV 715
            G   +     T  E+L+N    +  AK         F       + D+  +   L  +V
Sbjct: 249 FGILHFPDDGGTPQEILENTMTLISIAKLNPDLKYSEFSSDVIAKQKDKSSMALSLSESV 308

Query: 716 ENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           E    +  +V  PI+     +I+G E L++W + +  +IS   F+ + EE  MI  +  +
Sbjct: 309 ERGCDDFRIVVQPIVSRDTGQIIGGETLLRWQY-QGQDISPVIFIPLLEETRMILPVGKW 367

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +  ++ +           P   +  N++   +LD+     ++  + ++      + L  +
Sbjct: 368 VFWQVVKLCKQILA--FQPDFLLSFNVSYLQILDDTFLPFIRQTLEESGLPEGHLMLELT 425

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+     P+R +  +    K+GI   LDDFG   S L  L   P + +K + +LM     
Sbjct: 426 ETHFDEMPKRLQEFVAECLKLGIKFALDDFGNGFSSLQMLFKYPVNVIKLDRTLMNEITH 485

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           + + +  + SI+      +  +  + +  + +++ + +  CD IQ  +   PL    +L 
Sbjct: 486 STENLDFIMSIVYACHRSKKQVCVEGVETDAELEIVRQTDCDMIQGFYFYRPLEVEDLLG 545

Query: 952 LL 953
            L
Sbjct: 546 RL 547


>gi|94501819|ref|ZP_01308331.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
 gi|94426040|gb|EAT11036.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Oceanobacter sp. RED65]
          Length = 642

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 96/708 (13%), Positives = 223/708 (31%), Gaps = 87/708 (12%)

Query: 8   RSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAAD 67
           R     A L+ ++     ++ +     + +  +  +  L        + G D  +    +
Sbjct: 3   RKLAHLAVLLPIMLCCSALAHAETAAALRLDPNANI--LAPHIWFIEDAGNDLHIADILE 60

Query: 68  -----IDGISRRIEV---SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFS 119
                   +  +             +  W   ++ N   +  E ++ + +  L     ++
Sbjct: 61  DNQRSTSQLQWQKNTWPQINFGFSEKAYWLKTSIINPHPANEEWVLEIAYPLLDRVEIYA 120

Query: 120 PDLGSRRII-SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLW 176
            +   + +       +    ++     +  F +        T  + + +       + +W
Sbjct: 121 VNEAQQVVGFYHAGDKAIGKEKQIAHPNIAFPVQFPHQEQYTLYIHVKSEGSTQVPLTIW 180

Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVV-LGYISID 235
             + +        L++G   G+  ++A++  + +++ R  + +   A    + L  IS+ 
Sbjct: 181 SWSDFISNSIIHFLFQGFFYGMVLIMALYNFVVWLIVRQRVYLSYVAYILFLTLFQISLH 240

Query: 236 FGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAI 295
              +  +    +         S I L +S+  F+  +    ++   +  +         +
Sbjct: 241 GLGMLYVWKEYTWLNEYITTISLILLLASISFFIRDFFDIKKYSPNLSRLVLCSFYWYLL 300

Query: 296 LFCMSFYYPMVTASIARITL-ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
           L  +  + P   +         + +L   Y  +Y   +G+  +     AW +  I     
Sbjct: 301 LSIVFIFIPYSISIRIGAFFAWTQILLIIYITLYMLNRGHPSSRYFAVAWAVFLIG---- 356

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                          AL+  L     L      ++ L  G   + +F      SLA+   
Sbjct: 357 ---------------ALLLALNKFAFLPITLASEYGLQIGAGLEIMF-----LSLALA-- 394

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
                D      R   +    ++       +   +      +       +R  +++    
Sbjct: 395 -----DRMANTQREKISAQARSL------DLAHQVTQEREKL-------YRAEMENLKIA 436

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R      E                 + + +   ++   +       E   + E +   + 
Sbjct: 437 REHNEVLE-----------------KTVDDRTKELSEALE------ELSNAHEKLKNISV 473

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LT I NR  F     +    +     +   ++++DID +KK+ND  G   GD  L  
Sbjct: 474 TDALTKIHNRYFFDQHWRSEFKRAHRH-KMSIALIILDIDHFKKVNDNFGHPAGDLCLQK 532

Query: 595 LTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + + I  +  +  D++ RL G  F +IL   +                   I+   + I 
Sbjct: 533 VAQSIRIQANRESDLVCRLGGEEFAVILPGTDEMGAYEVAEKIRHTIEKRHISWEGKTIK 592

Query: 654 VTASIGFASWTSSKITSSE---MLKNAELAMYHAKHRGGNHVESFRVS 698
           +T SIG ++ T  K        M   A+ A+Y AK  G N    F  +
Sbjct: 593 ITVSIGISAMTPRKSDEKMRNIMFNQADQALYQAKGNGRNRTVIFESN 640


>gi|157377278|ref|YP_001475878.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sediminis HAW-EB3]
 gi|157319652|gb|ABV38750.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sediminis HAW-EB3]
          Length = 875

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/428 (25%), Positives = 199/428 (46%), Gaps = 5/428 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++K    ++ +A  D LTG+PNR  F++RL+  +         R  ++ ID+D++K 
Sbjct: 436 IAQRRKIELQLVHDANHDTLTGLPNRAMFMERLSQAVKHIRRHGLDRFALLFIDLDRFKL 495

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  L+  + R+   ++  D L R+ G+ F I+L S N +    + A  + 
Sbjct: 496 INDTLGHLEGDRFLMETSSRLKLCIRDNDTLGRIGGDEFVILLDSINGTDDAEEVAERVL 555

Query: 639 KSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  +     ASIG A   +    TS  +L++A+ AMY AK  G      +  
Sbjct: 556 TELSRPYKLANQHFISGASIGIAFSHNHKSDTSESLLRDADAAMYQAKTNGKGCYVIYDD 615

Query: 698 SSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S +  +  V ++ +L  A+ N EL L Y PI  L  E  + LE  + W+HP+ G I  +
Sbjct: 616 KSHKLLNQDVKLELELQNALSNHELLLSYLPIQNLRSETTMALEPRLYWNHPRLGKIKQA 675

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
               IAE   +   +++++L+R+  D  + +  +    + + INI+ K L        ++
Sbjct: 676 HLNNIAEHCGLTTELDIYLLQRLNSDYQALQKHSLSL-LPLHINISGKHLKHKHAVRQLK 734

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + ++ +   ++ L F E   + + +        L  + ++L L  +G+  S LS L +
Sbjct: 735 NALKQSRFKAEQLWLFFDEQGFILDTDNHINAFEILTSLNVNLGLMAYGSAHSALSSLTF 794

Query: 876 IPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + S       K+   +L++    A+ +E T+    I      + L  +G   
Sbjct: 795 LPLQGLKLDPSYANQLESKQHIKLLKAHFLTAQALELTVFVDGIGTTQQSEALQEIGFTL 854

Query: 935 IQDSHVAS 942
            Q   +  
Sbjct: 855 GQGQALGK 862


>gi|254975729|ref|ZP_05272201.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255093116|ref|ZP_05322594.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255314858|ref|ZP_05356441.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255517532|ref|ZP_05385208.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255650643|ref|ZP_05397545.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260683733|ref|YP_003215018.1| putative signaling protein [Clostridium difficile CD196]
 gi|260687393|ref|YP_003218527.1| putative signaling protein [Clostridium difficile R20291]
 gi|260209896|emb|CBA63831.1| putative signaling protein [Clostridium difficile CD196]
 gi|260213410|emb|CBE05053.1| putative signaling protein [Clostridium difficile R20291]
          Length = 603

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 189/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VL+
Sbjct: 179 YTDNLTKIKNQVAFENRAIEILYNA---SNKEYVLLNIDIDNFKYINDTHGYEYGDKVLI 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+    ++   + D    +  +I   +++   + T
Sbjct: 236 IVAAALSKTFNIKETCARIGSDNFVILAKYRDSL--LEDIREMLTNAIISELDMNVTQ-T 292

Query: 654 VTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG            + + ++  A +A   +K RG +    +  +          I 
Sbjct: 293 ISYCIGAYLVEIDNLGYKSINSIMDKANIAHKVSKTRGISSTVWYNENLLKQLQMENSIY 352

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E ++   P  ++    +V  EAL++W  P+ G +S  EF+ + E+   I 
Sbjct: 353 NYMYKAIENEEFHMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDEFIPLFEKSGFII 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    +     + N     I +N +   +  N   +     + +       I
Sbjct: 413 ELDFYMLKKACSFVKKTFMKKNQYTYPIAVNFSRVTIYQNSFYQRFLDTVKEYEIPFKYI 472

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      +    +L  L+K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 473 EIEVTESAFNEISQPVISILEELKKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 532

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +   EK  +I++ II M+  I  +++ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 533 KETFNREKVYSIIQCIIEMSHRIGMSVVCEGIETKKDLEFLNTVKCDVGQGFYFSKPIEE 592

Query: 947 NSI 949
              
Sbjct: 593 KEF 595


>gi|260887138|ref|ZP_05898401.1| putative sensory box sensor/GGDEF/EAL domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|330839091|ref|YP_004413671.1| diguanylate cyclase/phosphodiesterase [Selenomonas sputigena ATCC
           35185]
 gi|260863200|gb|EEX77700.1| putative sensory box sensor/GGDEF/EAL domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|329746855|gb|AEC00212.1| diguanylate cyclase/phosphodiesterase [Selenomonas sputigena ATCC
           35185]
          Length = 749

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/544 (17%), Positives = 192/544 (35%), Gaps = 31/544 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILDSFVGYRRGRLQ 480
           D+  +       +       S  +   +  W   I   +D   +R  +   +  +R    
Sbjct: 224 DMQSNLFYINDQMRDAFAFKSNIVKNFLGEWEKCIRRPDDLATYRADIKDIIESKRDVHD 283

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGD-ILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             +RV        W+        ++  +  L + G  +           +  +   D +T
Sbjct: 284 LRYRVTDRTGTEFWIRCCGILKWDAAREKPLFFSGSIS----------RLALDFVVDPIT 333

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G    +    +L  +       +    + + + ++ +++IN++ G +  D +L  +   +
Sbjct: 334 GFAREKGAEIKLQEL-----QKEYSSLSFIGLRLNNFREINEMHGRSHSDALLKDIAAGL 388

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
               +   ++ RL G RF  IL  E            +  ++     +    +   +S+ 
Sbjct: 389 TNRFRDSLLIYRLDGLRFLAILSPEIT-EDPKVILDFINLTVRNLYAIYGLAVQTPSSLA 447

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF------RSDRVMIKEDLCL 713
                 S     E++ N    +  AK         F   +           + I ED+  
Sbjct: 448 LMKDIPSDTACGEIIANMLSLLDLAKESPDEPYALFSPQNLETRKNLSRFLLAINEDVER 507

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              N     V  P +      IV  E L +W H +  NIS + F+ I E    I+A+  +
Sbjct: 508 GCTN--FRTVIQPTVTTDGFGIVSGELLCRWSH-EGTNISPAVFIPILERTQQIRAVGRW 564

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E+        R     P   +  N++   +LD E    M+  + +       +    +
Sbjct: 565 IFEQAVIHAKRIRRT--NPNFSLNFNVSYHQVLDPEFLPFMRQTLDRHEMDGKNLVAELT 622

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           E+    +P   +  +   R +GI L LDDFGT  S L  L   P D VK + SLM     
Sbjct: 623 ETNYNESPATLQTFIEACRDLGIRLALDDFGTGYSSLELLLKHPSDIVKLDRSLMKEMAY 682

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++     + SI+         +  + +    +++ +   GCDYIQ  +   P+  +    
Sbjct: 683 SKNSSDFISSIVYSCHKFGKKVCVEGVETAQELQTVLEAGCDYIQGFYFHRPMEISDFFS 742

Query: 952 LLKE 955
           LL++
Sbjct: 743 LLEK 746


>gi|160941251|ref|ZP_02088588.1| hypothetical protein CLOBOL_06144 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435812|gb|EDP13579.1| hypothetical protein CLOBOL_06144 [Clostridium bolteae ATCC
           BAA-613]
          Length = 657

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 187/423 (44%), Gaps = 10/423 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNRQ   + L  +  L     +   T++V+ I  +++IN++ G   GD  L  +
Sbjct: 230 DYLTNVPNRQ---ELLNMLDLLLRRYPDKDFTLLVVSIRDFRQINNICGQHRGDAFLKLV 286

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +   +   + + R SG+ F ++ I++    ++    + +   +  P    + +  + 
Sbjct: 287 CAFLCS-VGPKENVYRYSGDEFALLFINDRG-ERVRQCVLDIEARMRQPWQNQDYQFKLP 344

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
             +G    +    T  E +   E A+  AK    G        +      R  I   L  
Sbjct: 345 VVMGIIRRSEYVKTLEEAVSYIEYAVSQAKTGRYGQVCYCDQEMLEKLERRKKIIRILKA 404

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            + N  + + Y PI  +   + +  E+L++ +H   G +  +EF+ IAEE  +I  +   
Sbjct: 405 QLSNHSVEMYYQPIYSVETGQFLYAESLMRMNHTTIGPVYPNEFIPIAEETGLIIELTYV 464

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+ + + I    ++       I +N ++      +L   +  +I +     S +K+ F+
Sbjct: 465 ILDEVCKYINQLIEKGLPMEA-IHVNFSAIQFSQPDLSRKVLEIIQRNGTPMSAVKIEFT 523

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           ES +  NP+        +RK GI + LDDFGT  S ++ +  IPF T+K + SL+  +  
Sbjct: 524 ESTLAENPQVVTDFALEMRKHGIEMGLDDFGTGYSNIATVIRIPFGTIKLDKSLIWASID 583

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                  +R ++   K++  T+IA+ +  E   + +  +G + IQ  + + PL    + +
Sbjct: 584 NPTSALTIRHLVHAFKDLGMTVIAEGVETESQRQLVEDIGVEQIQGYYYSKPLSMEEMEE 643

Query: 952 LLK 954
            LK
Sbjct: 644 FLK 646


>gi|325678644|ref|ZP_08158254.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324109694|gb|EGC03900.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 563

 Score =  314 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 94/500 (18%), Positives = 191/500 (38%), Gaps = 29/500 (5%)

Query: 473 GYRRGRLQYEFRVRAADN-----QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               G +  E RV   +        +          +    +   + I   +       +
Sbjct: 71  SGEEGTVLMEKRVVTKNMAVAKCTVYQAEGACPLEEDERKKVDLIMRIVLRVIIHNNLQD 130

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +    F D  +G PN +SF   L      +  +     T +  ++  +  IN  +G   
Sbjct: 131 IVEQMTFYDE-SGYPNLRSFTRYLE---KHAENNRLYGYTAVHFNLRHFTLINQEIGRTS 186

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD  + +    IG+L+    I+ R+ G+ F  +  S          A  +    + P+  
Sbjct: 187 GDIAMKNYFNEIGKLVGDDGIVCRVGGDNFVCMFAS-------ERIAPILEVMKSAPVAY 239

Query: 648 L---EREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
               E+ + V++S G              +++         A+  G   +  F       
Sbjct: 240 DVGGEKRVMVSSSAGVFVIPDDFVYRNLGDVMDKVLTCSRAAREGGQESIVYFNSRMVEG 299

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           +   + +++    A+EN E  + Y P I +   E+ G EAL +W       +   EF+ I
Sbjct: 300 KEKVMRVQQLFPKALENGEFKVFYQPKIDIETGELAGAEALCRWIR-DGRIVPPMEFIPI 358

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+   I  ++  ML+ + +DI  W  +     + + +N++ K ++D +L E +  +I +
Sbjct: 359 LEQNTDICKLDFHMLDMVCKDIKRWLAEGRNV-VRVSVNLSRKHMMDVDLLEHILRIIDE 417

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I++  +E+      +  + ++  L+  GI  ++DDFG   S L  +  IP++ 
Sbjct: 418 NEVPHKYIEIELTETTTDVEFKDLKRVVNGLQMAGIYTSVDDFGMGYSSLKLIREIPWNV 477

Query: 881 VKFNGSL--MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +K + S   +   + +  R  + + ++ MAK +    IA+ +  E  +  L    C + Q
Sbjct: 478 LKVDKSFLPVDDDSAESTRTIMFKYVVAMAKALGLETIAEGVETEHQVDVLRDNRCSFAQ 537

Query: 937 DSHVASPLGFNSILKLLKER 956
                 PL  N     L + 
Sbjct: 538 GFLFDKPLPLNEFEDRLTKH 557


>gi|320535751|ref|ZP_08035835.1| diguanylate cyclase domain protein [Treponema phagedenis F0421]
 gi|320147399|gb|EFW38931.1| diguanylate cyclase domain protein [Treponema phagedenis F0421]
          Length = 427

 Score =  314 bits (806), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 155/402 (38%), Gaps = 9/402 (2%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++  +  D +     + IDID +K IN+V G   GD ++  +   I   L + D    +
Sbjct: 26  HLVFQTLKDSDKVVYFLYIDIDSFKTINEVWGHFAGDHLIEDVADIISSCLNYEDSAFHI 85

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F  +    +    +A     + K         E    +  SIG    T S     +
Sbjct: 86  GGDEF-SVFHGGSKESALALADTILEKVSNTNFIWNENTFNICVSIGIVPITCSTAREQD 144

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPII 728
           ++  A+ A   A   GGN  + F     ++          + +  AV+N    L    I 
Sbjct: 145 VINAAQQATLEAYQTGGNAFKLFSPLEMKTYSTENVGLWLQKIQNAVDNDGFVLYKQEIA 204

Query: 729 RLMDEEI-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
            L  E      E L++        I    F+  AE+  MI  I+ ++++ +   +   ++
Sbjct: 205 PLNKELPNKKYEILLRMKDTDGSIIPPDSFIPAAEKYNMIYLIDRWVIKHVFASVAKMKE 264

Query: 788 -QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                      IN++   +  N++ + +   I K   SP       +E   + N + +  
Sbjct: 265 IDHPDKNSVFSINLSGASIFSNDIIDYVLKNIKKYDLSPDNFCFEITERSAIRNLDVTSA 324

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
            +  LRK G + +LDDFGT  S   YL  +P D VK  G  +          ++++++  
Sbjct: 325 FVSALRKYGFAFSLDDFGTGFSSFPYLKTLPIDYVKIAGDFVRNIKFDYIDFSMVKAMRE 384

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           M   +    IA+ I     ++ L  +  D+ Q   +A P+  
Sbjct: 385 MCHRLGLYTIAEYIEDPEVLEILKDIKIDFGQGFLLARPVSL 426


>gi|50120935|ref|YP_050102.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611461|emb|CAG74909.1| putative signaling protein [Pectobacterium atrosepticum SCRI1043]
          Length = 592

 Score =  314 bits (806), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 191/435 (43%), Gaps = 19/435 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-VIDIDKYKKINDVLGIAVGDDVLVS 594
           D +T +PNRQ  +D ++ I D     +N    ++  IDI    ++   LG+   + +L  
Sbjct: 167 DGVTLLPNRQRLIDDISHITD---IHENYLLILIDTIDISYAYEMGCALGMPTVEGLLKD 223

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNS---LKIADFAIAMRKSIAMPINLLERE 651
           +   +   L   D L   +  RF +++ S        ++   A  + +SIA  I L    
Sbjct: 224 IGIFLRLSLNSSDNLYSAAVGRFALLVKSNKKELVLAELDACAERIHESIASHIPLK--- 280

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKED 710
             +   +G+  +        ++L+ +  A+  A                 +     +  +
Sbjct: 281 --LELFVGYTEFQIPAKDPHQILRESMSALRAAITTNTRQLAYDTEADKAQQIAFTLLNE 338

Query: 711 LCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           L   ++N+   LYLVY P + +    ++G EALI+W HP+ G I   +F+ +AE   +++
Sbjct: 339 LADVLQNNKPGLYLVYQPKLSIKTNAVIGAEALIRWRHPELGEIYPDQFIPLAEGTTLMR 398

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++    A  +  WR +       + IN+++++  +N+    + +++     +P  I
Sbjct: 399 PLTDWVTREAACQVKQWRQEGLT--FPVSINVSARNFSENDFIPRLISILDNHGLTPQDI 456

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +   E+  +     +   +  L+++G ++ LDDFGT  S LSYL  IP   +K + SL+
Sbjct: 457 DIECVETQEIIESTETLATIQALQQLGFTIALDDFGTGYSNLSYLRNIPSTVIKLDKSLI 516

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  K   I++SII M   +   ++A+ +  +  ++ L   GCD +Q  + + P+  
Sbjct: 517 KDIKTDRKSRVIVQSIISMLHKLNYIVLAEGVENKETLEHLAHFGCDEVQGYYFSRPIPP 576

Query: 947 NSILKLLKERFPLVK 961
            +    L  R     
Sbjct: 577 KAFTAWLAARSSQTS 591


>gi|114570851|ref|YP_757531.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
 gi|114341313|gb|ABI66593.1| diguanylate cyclase/phosphodiesterase [Maricaulis maris MCS10]
          Length = 806

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 182/424 (42%), Gaps = 18/424 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+P   + L  L  I           P V+ + I + K ++  LG  +      
Sbjct: 386 YTDASTGLPTHAAMLRDLAEITAK----TGAAPAVIAVQIKRRKHLSGALGYHIYARFEA 441

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++  R+         + RL    FG++  SE ++   +  A  +      P+ + +  I 
Sbjct: 442 AIAARLAGGNYP-VTVYRLLPGLFGLLQPSE-DTRDASVVARDVTGLFDTPVQVDDLNID 499

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-FRSDRVMIKEDLC 712
           V    G A        +   ++ A LA+  A+          +      +  + +  ++ 
Sbjct: 500 VGIICGLA----QGEDAETAIRQAHLAIDQARRLNLTQAVFDKDMYGNPAANLSLMSEMM 555

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A E  E+ L Y P +++       +EAL +W HP  G IS  +F+  AEE   I+    
Sbjct: 556 RATEKGEMSLYYQPKLKVRTGRYESVEALSRWFHPDRGFISPDQFIPQAEETGHIRPFTE 615

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++ +   D      +    PI + INI+   + D E     +++I         I L  
Sbjct: 616 WVIRQSIEDQKRLLAEG--KPIAVAINISGALVGDPEFARKARSMIVGASGP---ITLEI 670

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+ VM NPE++   L   R+ G  +++DD+GT  S L+YL  IP D +K +   ++   
Sbjct: 671 TETAVMTNPEKAIEHLNAWRESGARISIDDYGTGQSSLAYLQMIPSDELKLDRQFVSNLN 730

Query: 893 EKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  +++S I +A N+   ++A+ +  E D+  L  +G D+IQ  H++ PL  + + 
Sbjct: 731 ANARGRMLIKSTIDLAHNLGLEVVAEGVETETDLAALKLLGSDWIQGYHLSRPLPISELA 790

Query: 951 KLLK 954
           + L 
Sbjct: 791 EFLA 794


>gi|267994180|gb|ACY89065.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 996

 Score =  314 bits (805), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKRMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 911 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|148358979|ref|YP_001250186.1| hypothetical protein LPC_0864 [Legionella pneumophila str. Corby]
 gi|148280752|gb|ABQ54840.1| hypothetical protein LPC_0864 [Legionella pneumophila str. Corby]
          Length = 983

 Score =  314 bits (805), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 115/593 (19%), Positives = 235/593 (39%), Gaps = 41/593 (6%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           I  +  QH    G     + S  +     L +          +   D V+         G
Sbjct: 402 ITQSKPQHFYEEGVAFSSMVSLKQLDDFKLILDSMTLCFIVTNSCGDIVSINTTACKAFG 461

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHW 494
                +    R+         R+ ++  ++ F+  +            F     +     
Sbjct: 462 YEEVELKN--RSLFLLTPPPQREIYKNKINKFLHSKEPDPIDAGNNAIFLGYTKNGSEFV 519

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +    + +       +    +  DI++Q K  E ++  A  D +T + N++ F  R+   
Sbjct: 520 LK--GKFIKRRINKKIYLFVLLKDISQQIKEEENLVWQATHDPVTHLINKKLFHHRVIHA 577

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     + N   +++ ID++    I+++ G+ + +  L  +  RI   + F D LAR+  
Sbjct: 578 LQRCQ-NGNKPISILYIDLEMINFISNIYGMWIEEKFLNEVGSRILSEIHFGDTLARVGD 636

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            RF ++  +  N   +   A  ++  + M     +++  ++ +IG     +   T  ++L
Sbjct: 637 ERFVVLCENNENEALVLQLAEKIKDKLRMVFTFDQQKFFLSCTIGICHRLNKNDTVIDIL 696

Query: 675 KNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           ++AE+A+Y AK  G N++  F   +     D +M+   L LA++  +LY    PI+    
Sbjct: 697 RDAEVALYEAKRLGKNNIILFNSAIKKKVEDELMLATQLELAIDTKQLYFELQPIVTFNK 756

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             ++G E L++W       I  S F+ IAE    I  I  ++LE+    +  W+ +    
Sbjct: 757 SFLIGAEILLRWKL-NNKEIPPSMFIPIAERSGAIYQIGYWVLEQGCNIVAEWQKKLKKG 815

Query: 793 PIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
            +  I INI+ K L D    E ++ +I+KT  +P  I L  +ES +M + E++R +L   
Sbjct: 816 KVPYISINISMKQLEDAAFYEKVRKIIAKTKANPYNIVLEVTESALMEH-EQAREVL-YF 873

Query: 852 RKIG---------ISLTLDDFGTKCSLLSYLGYIP--FDTVKFNGSLMTGSTEKR--IAI 898
            K           + L +           +L       D +K +   +   ++ +   ++
Sbjct: 874 TKKNLVFAWPSMILELAI----------HHLNNYQHAIDILKVDKYFIDNISKNKLSYSL 923

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           ++ I+ MA   +  II + +      K L ++  D  Q    +  +  +   K
Sbjct: 924 VKKIVQMAHIFKAKIIIEGLERTEQYKLLAKIKPDAYQGFLFSPSVLQDDFEK 976


>gi|16765453|ref|NP_461068.1| diguanylate cyclase/phosphodiesterase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16420657|gb|AAL21027.1| putative PAS/PAC domain protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261247338|emb|CBG25163.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158684|emb|CBW18196.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913115|dbj|BAJ37089.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|332989058|gb|AEF08041.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 996

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 911 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|27376662|ref|NP_768191.1| hypothetical protein blr1551 [Bradyrhizobium japonicum USDA 110]
 gi|27349803|dbj|BAC46816.1| blr1551 [Bradyrhizobium japonicum USDA 110]
          Length = 566

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 126/248 (50%), Gaps = 7/248 (2%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             ++ DL  A++  E  L Y PI  L  + I G EAL++W HPK G +   +F+ IAE++
Sbjct: 303 RALELDLREAMDKDEFTLFYQPIYDLRMDRISGFEALLRWPHPKRGLVPPDQFIPIAEDI 362

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L R       W  +     + I +N+++  + D    E +   +  +  +
Sbjct: 363 GLITPLGEWVLNRACEQAAGWPSE-----LKIAVNVSATQIRDPRFAEVIANALDASTLA 417

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P R++L  +ESV++GN   +   L +L+  G+S+ LDDFGT  S LSYL   PFD +K +
Sbjct: 418 PHRLELEITESVLLGNSAETVATLHKLKAQGLSIALDDFGTGYSSLSYLRSFPFDKLKID 477

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +  +T       I+R+I  + +++  TI A+ +     + ++   GC+  Q    + 
Sbjct: 478 QSFVRDATATNGSKLIVRAITSLGRSLGITITAEGVETIEQLDQIRAEGCNEAQGFLFSR 537

Query: 943 PLGFNSIL 950
           P+    I 
Sbjct: 538 PVPATEIA 545


>gi|205357630|ref|ZP_02572140.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205330446|gb|EDZ17210.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|321224773|gb|EFX49836.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130447|gb|ADX17877.1| PAS domain-containing protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 998

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|326386772|ref|ZP_08208393.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208825|gb|EGD59621.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 647

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 104/438 (23%), Positives = 183/438 (41%), Gaps = 18/438 (4%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               A  D LT   NR++ L RL + L+      + RP + ++D+D +K +ND  G A G
Sbjct: 220 NYRRATIDELTDGLNRRAILKRLRSDLE---RGVSPRPWLALVDLDGFKHVNDTYGHAAG 276

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D+VL +++ RI   L       RL G+ F I+  +  ++ +       + +++  P+   
Sbjct: 277 DEVLRTVSERI-AALHGMLAHGRLGGDEFAILFDASLDADQAVAACHRLSRAVREPVPFN 335

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-- 706
              + + ASIG   + +++ T+   L+ A+ A+Y AK  G      F             
Sbjct: 336 GTRLRIFASIGL--YRANENTTGACLERADAALYKAKALGEGATVLFGPDDEEELCRRTL 393

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I      +V    L L+Y P++   D  IVG EA  +W            FM +AE    
Sbjct: 394 ITRQFNDSVLEERLRLLYQPVVDARDGRIVGAEAFARWSPDGINWQPPGMFMELAEATGR 453

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              +   +L R   +   W        I + IN++ +D++     E + A++ +      
Sbjct: 454 QSELTRVVLARALSECRPW-----ETGIRLSINLSPRDVVREGTVEMLGAIVEEIGGRAE 508

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +E  ++ +P R+   L  +R+ G  + LDDFGT  S LS L  +P D +K + +
Sbjct: 509 SLILEVTEQALLADPRRATYQLEAMRERGFRVALDDFGTGWSSLSQLRDLPLDLIKLDRT 568

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L +         A+   I+ +A  +      K I  +   +    +G   +Q  H   P 
Sbjct: 569 LASALPTDPGARAMTGMIVALAWQLGLGCTIKGIESDAQAEAARALGITRMQGFHFGRP- 627

Query: 945 GFNSILKLLKERFPLVKN 962
             +    LL     L + 
Sbjct: 628 --DGAASLLASLGQLSRR 643


>gi|77163907|ref|YP_342432.1| multisensor diguanylate cyclase/phosphodiesterase [Nitrosococcus
           oceani ATCC 19707]
 gi|254435514|ref|ZP_05049021.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
 gi|76882221|gb|ABA56902.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|207088625|gb|EDZ65897.1| cyclic diguanylate phosphodiesterase domain protein [Nitrosococcus
           oceani AFC27]
          Length = 696

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 218/573 (38%), Gaps = 16/573 (2%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           VI      +++  A  +    +     +    +  S D V  +      +        + 
Sbjct: 120 VIKRELQDLENRRARRHSEMVLGESERQVRALLESSRDAV-GYVHEGMHIYANRAYLELF 178

Query: 439 GL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G      + G     L  I   + + F+  L  +         +  R   AD        
Sbjct: 179 GYHELDEIEGMP--LLDMIAPEEHNRFKAFLKEYGASEGKSAHFTLRAHKADGHTFTAAW 236

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
              P ++  G+    I +  D T    + E I     +D LTG  +R  +L+ +   + +
Sbjct: 237 EFTP-ASIEGEFCTQI-VIRDKTYDLAAEERIKQVQQRDILTGFFSRPHYLELMEKWV-I 293

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +A   +   +++ I ID++ ++   +GI   D V+V + R + +      ILAR     F
Sbjct: 294 AARAGDRESSLLYIAIDQFNRVRARVGIGASDLVVVDVARILQQYCDEKVILARFGDEVF 353

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L   ++  + A      +      + + ER I VT SIG      S     ++L+ A
Sbjct: 354 TLLLPHGSDEQEDALAEQLRQAVDRHLVEMDERSINVTCSIGICRIGESAPGGQQILERA 413

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRV----MIKEDLCLAVENSE-LYLVYHPIIRLMD 732
             A   A+  GGN +E +R               +  L  A+ N +   L Y PI+ L  
Sbjct: 414 HKACLKAQEAGGNRIERYRPVIEDLTDQEKIKQWEVQLREAMNNKDGFCLFYQPIVSLHG 473

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           E     E L++      G I   +F+  A +L ++  I+ +++ +    + S        
Sbjct: 474 ETEEIFEVLLRMTDDAGGYILPEKFLEPAAQLKLMGEIDRWVIAKAMSVLHS--RHQVGQ 531

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            I   + ++   + D  L   ++  + ++      +    SES  +   +R + L+  LR
Sbjct: 532 LIRFFVKLSDPSIHDKNLLPWLKKHLQESGLDARSLIFEISESSALNYLKRVQQLVEGLR 591

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIE 910
            +G    L+  GT     + L +I  D +K +G+ +      E+    ++ II MAK   
Sbjct: 592 VLGCQFALEHVGTGLDTSNCLKHINVDYLKIDGAFIENLLQDEQNQEAVKIIIEMAKEAG 651

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              IA+ +     +  L + G DY Q  ++  P
Sbjct: 652 KPTIAEFVSDANTLALLWQFGLDYAQGRYIQEP 684


>gi|291556685|emb|CBL33802.1| FOG: EAL domain [Eubacterium siraeum V10Sc8a]
          Length = 548

 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 179/424 (42%), Gaps = 13/424 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D+  GIPN + F   +  + +     D     V+  +I     +N + G     +++  
Sbjct: 129 RDS--GIPNSKGFRAFIEEVKENGVLSD---YAVIRANIKGCNTLNTIFGYQATTEIIQR 183

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             R + + +   +I +R   + F +++   +    + +FA      +       +    +
Sbjct: 184 FARTLNKTMYSDEICSRSGSDNFCLMVKKSHLKTHLKNFAKT---PVNFYYGKEKTVYEI 240

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLC 712
               G      S      +L  AE  +  AK R       + +   +      +++  + 
Sbjct: 241 ALRAGIVMLDDSTEDIDTILARAETCIDIAKRRADTDFVYYDLDTINREKQLTLLESGMP 300

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + E  + + P +R+    +VG EALI+W       IS ++F+ IAE    I  +++
Sbjct: 301 QALADGEFVVYFQPKVRVDTRTLVGAEALIRWMR-DGKVISPADFIPIAERTGFIMKLDM 359

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           F+LE     I  W++      + + +N +   L    L E +  +I+     P  +++ F
Sbjct: 360 FVLEHTCAMIKQWQENGKRT-VPVSVNFSKIHLRFPHLAEKIMNVINSYGIEPHYLEVEF 418

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGS 891
           +E+    +    +  +  L+  G+ +++DDFGT  S L+ L  + FD +K + SL  +  
Sbjct: 419 TETAYTDDFNAIKQAIIDLKSYGLMVSMDDFGTGYSSLALLKDLDFDILKLDKSLAGSDD 478

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +   +L +I+ MA+ +  T + + +  +  +  L  MGC+ IQ  +   PL  +    
Sbjct: 479 DARGQVVLENILHMAQELSMTTVCEGVEDKNIVDNLRNMGCNIIQGYYFDKPLPESEFAS 538

Query: 952 LLKE 955
            L+ 
Sbjct: 539 RLES 542


>gi|238912553|ref|ZP_04656390.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 996

 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 217/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A+++    +A  +     +  L+R+G 
Sbjct: 911 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLGIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|254457359|ref|ZP_05070787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207086151|gb|EDZ63435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 531

 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 108/551 (19%), Positives = 220/551 (39%), Gaps = 43/551 (7%)

Query: 406 RQSLAVLGSGDIVWD-WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +   AV  S   ++   D+             +   +   + G     +      D    
Sbjct: 9   QYKDAVDKSS--IFSKTDVSGTITYVNDKFCEVTEYSREELLGHTHAIIK-----DPTVS 61

Query: 465 RTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
           +++                  +       F+++   I P+ +S+G IL YI I  DITE 
Sbjct: 62  KSVFKEIWKTITAGNIWNGVLKNIKKGGGFYYVNSTIYPIKDSDGKILEYISIRQDITEL 121

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            KS + +   +  D LT +PNR+   +RL        ++++    ++ +DI  +  IND+
Sbjct: 122 IKSQQLLEIYST-DTLTHLPNRKKLNERL-------KSNEDELMAIL-LDIKDFIVINDL 172

Query: 583 LGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            G  + D VLV + +R+   +     IL +L  +R+ I+    +++   + +   +  ++
Sbjct: 173 YGENIADLVLVEIAKRLNTYIKNESVILYKLDADRYLIL---VDDASLFSKYESLIEFTL 229

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSF 700
               N +  +I VT +I  A        S+E+L    LA+  AK  +      +  +++ 
Sbjct: 230 LSEDNFIINDIVVTFNISMA------TGSTELLSKTSLALKEAKKTKSRYFPYNDSINTK 283

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++ +K   D   A+ N  +   + PI+    EE+V  E+L +        I+ S+F+
Sbjct: 284 EVHKLNLKRFNDFKDALINDRIEPFFQPIVDANTEEVVKYESLARIRDADGNIIAVSDFL 343

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+    +     ++++I     +   +       + IN+  +++   +L   ++  +
Sbjct: 344 SIAEKSSFFENFTRQIIQKIFAISKASNKE-------LTINLTYENINSEKLLNYIENRL 396

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                    I     ES  + +          ++K G  + +DDFGT  S  ++L     
Sbjct: 397 KMHKGPA--ITFELLESEEISDYSVLENFSSMVKKYGSLIAIDDFGTGYSNFTHLSRFKA 454

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D VK +GS+++     E    I+  ++  AK     +IA+ +      K +  +G D +Q
Sbjct: 455 DFVKIDGSIISKIEEDENSRLIVSILVEYAKRNNIKVIAEYVSSPEIAKMVRDLGVDLLQ 514

Query: 937 DSHVASPLGFN 947
             H        
Sbjct: 515 GYHYGKAESAA 525


>gi|323496662|ref|ZP_08101714.1| signal transduction protein [Vibrio sinaloensis DSM 21326]
 gi|323318315|gb|EGA71274.1| signal transduction protein [Vibrio sinaloensis DSM 21326]
          Length = 590

 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 108/553 (19%), Positives = 207/553 (37%), Gaps = 20/553 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               V    D ++            P      G+ SG  H  ++ WL  +H  DR     
Sbjct: 48  FKHMVDVLNDGIFYMSDTEHVCFYNPTFYKRFGIESG--HTCLQTWLDLVHPMDRRMLEG 105

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +D  +     +L  ++RVR  + Q+ W+           G     IG   DI+++K   
Sbjct: 106 KVDEHIQEDECKLATQYRVRCTNGQYVWLEGTA-ITKTVKGK-RFMIGCHKDISDKKLME 163

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
             +   +F+D  +G+ N    +  L  I       D +   ++ I +   +    + G  
Sbjct: 164 AYVHQTSFKDGASGLSNDHKLVMDLENI-----EPDGITHNLLYIQVANIRSYLSLYGSQ 218

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +  DVL  L + +         L R+  + F I++  E     + +    +       + 
Sbjct: 219 IMRDVLNHLVQALNSFPDEIIDLYRIRTDDFAILVKGEYEESDLLELGERIADKYKQAVR 278

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                     SIG      +++ + E +K A      A  +  NH+  +   +       
Sbjct: 279 TNGFLYGSEMSIGIYPDIPAELEADEAIKIACRTSQFASEQKQNHIRVYTGPTKTKVDRH 338

Query: 707 --IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I+ +L  A+    L + + PII      I   EAL++W   + G I   EF+ +AE+ 
Sbjct: 339 FYIERELGNAINQDLLSVKFQPIICTKRNAIASFEALVRWRCQEVGEIFPDEFISVAEKK 398

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +   +L +    I  ++   N      +  ++   LL++   E ++++  + L  
Sbjct: 399 GLIADLGYLVLSKACDFIRQYQATHNTSVRVNVN-VSVLQLLNHSFPETVKSIADQYLIE 457

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  I L  +E++++   + +   L +L ++G  L+LDDFG   S L+    +P   +K +
Sbjct: 458 PKHIVLELTETMILDGNQNAIDQLNKLSQLGFQLSLDDFGAGYSSLNSFFDLPLQQIKID 517

Query: 885 -----GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
                 S            L  +I +    +  I+ + I      K  T +G  Y+Q   
Sbjct: 518 KSIAWRSFT---NPATFEYLTFVIKLCSAYDVDIVIEGIENAQMAKAFTDLGASYLQGYW 574

Query: 940 VASPLGFNSILKL 952
            + PL   S    
Sbjct: 575 FSKPLSLASASHY 587


>gi|254974365|ref|ZP_05270837.1| putative signaling protein [Clostridium difficile QCD-66c26]
 gi|255091759|ref|ZP_05321237.1| putative signaling protein [Clostridium difficile CIP 107932]
 gi|255313489|ref|ZP_05355072.1| putative signaling protein [Clostridium difficile QCD-76w55]
 gi|255516177|ref|ZP_05383853.1| putative signaling protein [Clostridium difficile QCD-97b34]
 gi|255649273|ref|ZP_05396175.1| putative signaling protein [Clostridium difficile QCD-37x79]
 gi|260682445|ref|YP_003213730.1| putative signaling protein [Clostridium difficile CD196]
 gi|260686044|ref|YP_003217177.1| putative signaling protein [Clostridium difficile R20291]
 gi|260208608|emb|CBA61327.1| putative signaling protein [Clostridium difficile CD196]
 gi|260212060|emb|CBE02642.1| putative signaling protein [Clostridium difficile R20291]
          Length = 958

 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 93/474 (19%), Positives = 198/474 (41%), Gaps = 31/474 (6%)

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             E      D +  W+ + I    +     L+ +G+  D+T++      I      D LT
Sbjct: 480 NAENVFCTKDKKLKWIRMNI--FEDE----LKVLGVVVDVTKEFIEKRKIEYERDFDILT 533

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            + NR++F  ++         D+      ++ D+D  K IND  G   GD+ +      +
Sbjct: 534 NLLNRRAFHSQIQE--KFKNKDELKIAAFIMWDLDNLKYINDTYGHDAGDEYIRCAADIL 591

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN--LLEREITVTAS 657
            + + +  I++RLSG+ F + +    +   I D   +++K +   +       E  + AS
Sbjct: 592 KKFISWNGIVSRLSGDEFYVFIYGYESKDSIRDIINSVKKQMNNTLLKLHDGTEFKIRAS 651

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAV 715
            G + +        E+++ A+ AMY  K+     V  F ++ +  D  ++    +L   +
Sbjct: 652 AGISWYPDDSTNYDELMRYADFAMYQIKNTIKGEVSEFDINIYNKDSFLLSNREELNKLI 711

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +   +   + PI+     ++   EAL++         S  + + +A     +  I     
Sbjct: 712 DGQLVEYAFQPIVDCK-GKVFAYEALMRPKIKT--FSSPIDVIRLARSQSKLYQIERITW 768

Query: 776 ERIARDIISWRDQANMPPIFI-LI---NIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +  +    ++++     +F+  I   N++  D       E ++ L        +R+ L 
Sbjct: 769 FKALKSFKKYKEKFGDCKLFLNSIPNNNLSKVDF------EEIEDL---YGEYLNRVVLE 819

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  + N +        +    I + LDDFGT  +  + L YI  D VK + S++ G 
Sbjct: 820 ITENDKI-NEDFIEKKKAYIDHWNIEIALDDFGTGYNGDAVLLYIMPDYVKIDMSIVRGI 878

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              E R  IL+++I  +      +I++ +  + +++ L  +G DY+Q  +++ P
Sbjct: 879 DKDENRQKILKNLISYSNERNIKVISEGVETKGEMETLINLGVDYMQGYYISKP 932


>gi|152964326|ref|YP_001360110.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358843|gb|ABS01846.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 792

 Score =  314 bits (804), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 180/451 (39%), Gaps = 23/451 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ + +   A  D LTG+ NR          L  +  + +   ++ +I++     + DVL
Sbjct: 352 RTHDRLSFQALHDPLTGLANR--------AALQSALHEPDRTQSLALIEVGGLDDVTDVL 403

Query: 584 GIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G+ VG+DVL +    + E +        R+  + F ++L        +     A     A
Sbjct: 404 GVTVGEDVLRAAAANLREHVHALGGTTYRVRHDEFAVLLPGPP-EETVRHLPGAFAAVSA 462

Query: 643 MPINLLE-REITVTASIGFAS-----WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            P+ +       V A  G A+      T     +   L +A+LA+  A   G      + 
Sbjct: 463 APLQVPGAGRFPVDAVAGLAAVASGPSTGGGREAMTPLLHADLALRDA-RLGATGFSVYS 521

Query: 697 VSSFRSDRVMIKEDLCLAVE--NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                +    +     LA       + + Y PI+      +   EAL +WD  + G IS 
Sbjct: 522 GEVASAHARRLLLRERLAFAVAEGTVDVHYQPIVNFTTGRVEKFEALARWDDVQLGRISP 581

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AEE  ++ A+   +L R      +         + + +N++   L      + +
Sbjct: 582 VEFIAVAEESNLVVALGEHVLRRAV--ASAHAAGVFAAGVRLAVNVSVVQLQAPGFADVV 639

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + ++++    P  + L  +ESV + +   +  ++  L  +G  + +DDFGT  S   YL 
Sbjct: 640 REILAQHEIPPHLLTLELTESVFLDSDSPAERVVTELAALGCQIAIDDFGTGYSAFGYLD 699

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P   +K + SL    T     ++++ +++ +A  +  T++ + +  + + +    +  
Sbjct: 700 RLPVHVLKVDRSLTQSMTGAGNGLSVVTAVVDLANRLGLTVVVEGVETDEEAEICRSIQA 759

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
              Q    ++ +  + I   L   +P+    
Sbjct: 760 GLGQGWLYSAAVTADRIGAELAREYPVSPGA 790


>gi|27228531|ref|NP_758581.1| hypothetical protein pCAR1_p040 [Pseudomonas resinovorans]
 gi|219856952|ref|YP_002473984.1| C terminus of YkoW-like protein [Pseudomonas sp. CA10]
 gi|26106119|dbj|BAC41559.1| C terminus of YkoW-like protein [Pseudomonas resinovorans]
 gi|219688880|dbj|BAH09971.1| C terminus of YkoW-like protein [Pseudomonas putida]
          Length = 311

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 142/304 (46%), Gaps = 7/304 (2%)

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVEN 717
              + +    +  +L++A+ AMY AK  G N    F VS  + D+        +  A+ +
Sbjct: 1   MTLYPNDNENADTLLRHADQAMYKAKQSGRNRFHLFDVSKDKMDKSAFDTVIRVRQALHD 60

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            EL L Y P I L    ++G EAL++W HP+ G I    F+ + E+  +I  I  +++++
Sbjct: 61  GELCLHYQPKISLSSGAVIGFEALLRWQHPRDGLILPQYFIPLIEQSDLIMEIGEWVIDQ 120

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESV 836
               I  W D  +     + +NI++         + ++ L+       P  + +  +ESV
Sbjct: 121 ALSQIEQWADLGH--SWSVSVNISALHFKKENFVKSLKFLLDSHPNVLPQMLDIEITESV 178

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEK 894
           V+ +       L   + +G++ +LDDFGT  S LSYL  +P  ++K + S +      + 
Sbjct: 179 VIEHLSHVTQCLIACQDLGVTFSLDDFGTGYSSLSYLKQLPTQSIKIDKSFIRDILIDKD 238

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + + ++II +AK+    +IA+ +        L  +GCD  Q   +A P+    +L  + 
Sbjct: 239 SLGLTKAIIGLAKSFNREVIAEGVETVEHEVLLMNLGCDVAQGYGIAKPMPVEKVLSWVA 298

Query: 955 ERFP 958
           +  P
Sbjct: 299 KFVP 302


>gi|325833608|ref|ZP_08166057.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325485532|gb|EGC88001.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 758

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 183/455 (40%), Gaps = 25/455 (5%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G I+ +I I      Q ++   +   A+ D +TG      F +R   ++     +     
Sbjct: 300 GVIMLFIVIV-----QHRNRRRLEAIAYVDPVTGGDTAGRFRERYYDVVRTDPRN----L 350

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  +I K+K  ND  G   GD +L S    I   L+  +  AR+S + F I+L   + 
Sbjct: 351 VLVYANIAKFKSYNDREGKEGGDRLLRSAYDMIERQLREGEFAARVSADHFVILLREPDE 410

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML--KNAELAMYHA 684
           +            S ++       ++ V+   G        +     L    A LA   A
Sbjct: 411 ASTKERLNEFRLTSESV-----GEQVLVSMDFGAYILDDDALEQEFTLVTDAANLARASA 465

Query: 685 KHRG-----GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           + R             R+         +++    A+ N E ++   P + L +  IVG E
Sbjct: 466 EKRMLPSGARVGFYDDRLRRRFLREKELEDRFPHALANGEFHMYLQPKVALPERRIVGAE 525

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W  P+     + EF+ + E   +I  ++ +M  ++   +  W  +   P   + +N
Sbjct: 526 ALVRWISPEGMLCPN-EFVPLFERDGVIAELDFYMFCQVCALLKRWERE-GRPLFCVSVN 583

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++  +   ++     +  I++       ++  F+ESVV         ++ R+  +G   +
Sbjct: 584 VSRSNFDVSDFFARYERHIAENQVPARYLEFEFTESVVFDRTGEINQVIRRIHALGARCS 643

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  S L+ L  +  D +K +     G T  +K  +I+  I+ +A+++    +A+ 
Sbjct: 644 MDDFGSSYSSLNMLRSLEVDIIKLDQGFFRGDTDMDKARSIVNGIVGIARDMRIETVAEG 703

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           I     +  L  +GC+ +Q      P+  +     
Sbjct: 704 IEDMGQVDFLESVGCNVVQGYVFGKPMPADEFQDF 738


>gi|87120024|ref|ZP_01075920.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
 gi|86164726|gb|EAQ65995.1| sensory box sensor/GGDEF/EAL domain protein [Marinomonas sp.
           MED121]
          Length = 547

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 185/439 (42%), Gaps = 18/439 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++   +++ +   AF+D LTG+ NR + +         +  D++    +  IDI + +K+
Sbjct: 111 SKLDAAMQKLEKEAFEDTLTGMKNRAAMMLFFEEC--RAKQDNHYYLAI--IDIARLQKL 166

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           N   G  V D+++  +++ I +          L   +F  I      +     F   +  
Sbjct: 167 NKSQGFQVADNLIRQVSQIIYQHADKESPCYSLYAGKFAFI----TRASDQESFKHNIEG 222

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            I+  I L    +++        ++        +    E ++ HAK    N +  F  + 
Sbjct: 223 LISK-IQLDNDNVSLHLGGIKLDFSLDNS---ALATRFEQSLQHAKGLKSNTLVFFSNTI 278

Query: 700 FRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +      +   + + ++N E    Y P I     +I GLEALI+W HP+ G +   +F
Sbjct: 279 VEAIEARESLLSLVYMGIQNDEFIPYYQPKICTQTGKIKGLEALIRWQHPQRGILRPGDF 338

Query: 758 MLIAEEL-CMIKAINLFMLERIARDIISWRDQANMPP-IFILINIASKDLLDNELCEGMQ 815
           + I E    ++  +   +  ++  ++    ++    P   + IN++S     + L   + 
Sbjct: 339 LPIVETSKNLMLKLEKHIFNKVISEVPQLINRFYSTPGFRVSINLSSIQFNRDFLVRELL 398

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            + +        I+   +ES ++ + + + L+  +L+  G  + LDDFGT  S L+YL  
Sbjct: 399 DICNHYQVDTKYIEFELTESSMLEDLDCAILISNQLQAAGFHVALDDFGTGYSSLAYLQN 458

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P + +K + S +           ++  II +A+ +   I+A+ +  E  +  LT +  +
Sbjct: 459 LPVNVIKLDYSFVKKIPHDIRSGHVVEHIILLAQKLGLLIVAEGVEHEEQLNYLTDLKVE 518

Query: 934 YIQDSHVASPLGFNSILKL 952
            +Q  +   P+    ++ L
Sbjct: 519 LVQGFYFHKPVPLEKVILL 537


>gi|260438849|ref|ZP_05792665.1| sensory box/GGDEF family protein [Butyrivibrio crossotus DSM 2876]
 gi|292808688|gb|EFF67893.1| sensory box/GGDEF family protein [Butyrivibrio crossotus DSM 2876]
          Length = 643

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 110/470 (23%), Positives = 197/470 (41%), Gaps = 18/470 (3%)

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           W  +    +   NG+ +  +    D+T++ ++ + I   A  D LTG+ NR      L  
Sbjct: 183 WYDVNFSGLKWINGEDV-LVCTTIDVTQKIRNRQKIEYQANNDYLTGLFNRMKCERDLDE 241

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
           IL     +   +  V+ +D+D +K++ND LG   GD +L  +   + E     +   R+ 
Sbjct: 242 ILKNM--NPGEKGCVVFLDLDNFKQVNDGLGHQYGDVLLQEIAYSLQETDGIKNSCYRMG 299

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F II+       KI +    + K      ++++ +   T S+G A +     T  E+
Sbjct: 300 GDEFVIIVKP-WYFDKITEIVDKISKRFNDIWHIMDVDYYCTMSMGIAVFPDQGKTVDEL 358

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN------SELYLVYHPI 727
           +K A+ AMY AK  G N    + V                +++        +  + Y P+
Sbjct: 359 IKKADFAMYEAKKGGKNRFLWYTVEDEERKCAD--NGFRDSIKELVGDDCRDFDINYQPV 416

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
               D  + G EAL++ +    G +  +EF+  AE L ++  I  ++  +  + +  W  
Sbjct: 417 FD-KDGILYGAEALVRINSGSLGRLLPAEFLPTAEYLGIMNRIGHYVFAKAVKTLKKWN- 474

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
               P + + IN+A   L+  +  E +  +I +   +P  I    SE     + + +   
Sbjct: 475 -GTHPDLKMFINMAPTQLMMPKAAENIMNIIKQWEVNPGNIYCDISEKTEFLDEKMALAT 533

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPM 905
           L  L   GI+++LDDFG+    L +L       +KF+ SL+  S      I ILRSI  +
Sbjct: 534 LEILNGHGINISLDDFGSGKMSLGFLKDSHASMIKFDNSLVKKSRTDDVEITILRSITEI 593

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL-KLLK 954
           A  ++  I    I  + D         DY+   +    L  +    K LK
Sbjct: 594 ADILDIDIAFVGIEDDNDNNIALENKADYLGGFYYGEALPEDEFETKWLK 643


>gi|320086556|emb|CBY96327.1| Uncharacterized protein yegE [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 996

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 911 PHIADYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 81.5 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLSTVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|205359533|ref|ZP_02830184.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205345155|gb|EDZ31919.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
          Length = 998

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 PHIADYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 81.5 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLSTVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|307941885|ref|ZP_07657239.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
 gi|307774982|gb|EFO34189.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Roseibium sp. TrichSKD4]
          Length = 644

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 197/430 (45%), Gaps = 17/430 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +    +   A +D+LTG+ NR+     L   + ++  +   + +++ +D DK+K IND 
Sbjct: 206 HELHVALENAASRDSLTGLLNRRELDLALVREIAIAEREQQ-KLSLLFMDADKFKLINDT 264

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G  +GD+ L ++T+RI  L      + R  G+ F +++ +      I  FA  +    A
Sbjct: 265 FGHNIGDEFLRNVTKRIRALESADVSIFRFGGDEFVLLVRNCGKLCAIT-FAERIHNLFA 323

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P+++L  +   T SIG  ++     T+S +L  A++A+Y AK  G     ++ V    +
Sbjct: 324 RPVSVLNTQHETTFSIGTVTYPDDAKTASLLLARADMAVYDAKRSGRRRTIAYDVEFDLA 383

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH-PKWGNISSSEFML 759
                  +  L  A+++  ++    PI R+ D  +   EALI+         +   + + 
Sbjct: 384 YLKEALFERSLRKALKSKSIFFHKQPIARVSDLSLWAREALIRIPCLEDGKFVPPDQAIN 443

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IA +   +  +    L      +    + A   P  + IN +++ L+D    +    L S
Sbjct: 444 IASQSGYLGDLTDLTL-----AMARGHEAAKDVPECLCINFSAEQLIDASTFKKFSDLAS 498

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  +I L  +E  ++  PE    LL  L K+G  ++LDDFGT  S L+ +  +P +
Sbjct: 499 VLNERVRQIVLEVTEDRLIEKPE-LIDLLHDLSKLGYRISLDDFGTAYSALACVRLLPLE 557

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K + SL+ G+   E+   +  + I +A+  +  ++ + +     ++ +T++G ++ Q 
Sbjct: 558 IIKIDKSLLWGAMEDERDQRLFEAAISIARTFDCKVVVEGVETPKQLEYITKLGVEFAQG 617

Query: 938 SHV----ASP 943
            ++    A P
Sbjct: 618 YYIDDLLARP 627


>gi|240140612|ref|YP_002965092.1| putative phosphodiesterase [Methylobacterium extorquens AM1]
 gi|240010589|gb|ACS41815.1| Putative phosphodiesterase [Methylobacterium extorquens AM1]
          Length = 584

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 202/434 (46%), Gaps = 17/434 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN---DVLGIAVGDDVL 592
           D L+G+P+R  FLD L    DL+A   +     ++ID+ + ++++    V+G    DD++
Sbjct: 153 DPLSGLPSRNQFLDDLA---DLAAEHPDEARIAVLIDLGRPEQVSAYSRVMGPGRVDDLV 209

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-IADFAIAMRKSIAMPINLLERE 651
               R +  L+     L   +  +F  +          +   A   R++    I      
Sbjct: 210 REAARELRRLIGPGRKLYHTAATQFTFLAPRGAQQDDYVRLLADEHRQARQRSIT----G 265

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKED 710
           + +T++IG + +        + L++   A+  A+           V+     R   + +D
Sbjct: 266 MLLTSAIGVSVFKPCTTAPQDALRSLYSAVQDARSLHDLISVYSSVADEAYQRRYQLLQD 325

Query: 711 LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
              A   + +L LV+ P I L     +G EAL++WDHP+ G +S  EF+ + E     +A
Sbjct: 326 FGPALGADDQLRLVFQPRIDLSTGRCIGAEALLRWDHPELGPVSPGEFVPVIELSPHAQA 385

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  F+LER       W+D  +   + + +NI++ +L+++   + ++A + +   +P +++
Sbjct: 386 MTAFVLERALAQARCWQDAGH--SLVMSVNISAANLIESGFGQSVEAGLRRYGLAPWQLE 443

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES +M N E++R  L  L   GI L +DDFGT  S L+YL  IP   VK + S + 
Sbjct: 444 LEVTESAIMQNAEQARRQLDLLAAAGIRLAIDDFGTGYSSLAYLQDIPAHVVKIDQSFVR 503

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E+  +++ S+I ++ ++   ++A+ I       ++  M CD  Q    A PL   
Sbjct: 504 KLADGERERSLVHSMIHLSHDLGYRVVAEGIETAEAADQVRAMACDEAQGYLFARPLEIG 563

Query: 948 SILKLLKERFPLVK 961
           +    L+E     +
Sbjct: 564 TFETWLREHEQDAR 577


>gi|213052464|ref|ZP_03345342.1| hypothetical protein Salmoneentericaenterica_05746 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425523|ref|ZP_03358273.1| hypothetical protein SentesTyphi_07545 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 748

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 220/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 139 VVWALLAVSLV--------RHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 190

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 191 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 250

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 251 KGPLLEDIYRA-NRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 309

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 310 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 368

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 369 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAV 428

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 429 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 488

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 489 LTSSKGMMPLEEQWHMIKNNLLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 548

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +     R   +         + + + +++  L    L + +   
Sbjct: 549 RAGLADSALHHALDRRVFHEFFRHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 605

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 606 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 662

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 663 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 722

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 723 DLIYGDTIAEAQPLDLLLN 741



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 14/202 (6%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           L  ++IL+   ++  V+      +   ++ E R   A+  S   +         +     
Sbjct: 23  LPFLMILLPANMMTMVMYAFRTERKHITESESRFRNAMEYSAIGMALVGTEGQWLQVNKS 82

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
           ++  LG +   +      +       D +N    L+  V         E R    +    
Sbjct: 83  LSHFLGYSQDEL--RTMTFQQLTWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRNGDVV 140

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL--DRL 551
           W ++ +  + + +   L +I    DI + K+S +       +  +T   N   F   +RL
Sbjct: 141 WALLAVSLVRHKDNQPLYFIAQIEDINDLKQSEQENQRLMER--ITQ-ANEALFQEKERL 197

Query: 552 TTILDLSATDDNLRPTVMVIDI 573
              LD           V+ ID+
Sbjct: 198 HITLDSIGE------AVVCIDV 213


>gi|62180696|ref|YP_217113.1| PAS/PAC domain/diguanylate cyclase/phosphodiesterase
           domain-containing protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62128329|gb|AAX66032.1| putative PAS/PAC domain; Diguanylate cyclase/phosphodiesterase
           domain 1, Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715170|gb|EFZ06741.1| PAS/PAC domain/diguanylate cyclase/phosphodiesterase
           domain-containing protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 996

 Score =  313 bits (803), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQPTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSAPLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 911 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|257792313|ref|YP_003182919.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
 gi|317490235|ref|ZP_07948723.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|257476210|gb|ACV56530.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
 gi|316910729|gb|EFV32350.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 758

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 183/455 (40%), Gaps = 25/455 (5%)

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G I+ +I I      Q ++   +   A+ D +TG      F +R   ++     +     
Sbjct: 300 GVIMLFIVIV-----QHRNRRRLEAIAYVDPVTGGDTAGRFRERYYDVVRTDPRN----L 350

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  +I K+K  ND  G   GD +L S    I   L+  +  AR+S + F I+L   + 
Sbjct: 351 VLVYANIAKFKSYNDREGKEGGDRLLRSAYDMIERQLREGEFAARVSADHFVILLREPDE 410

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML--KNAELAMYHA 684
           +            S ++       ++ V+   G        +     L    A LA   A
Sbjct: 411 ASTKERLNEFRLTSESV-----GEQVLVSMDFGAYILDDDALEQEFTLVTDAANLARASA 465

Query: 685 KHRG-----GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           + R             R+         +++    A+ N E ++   P + L +  IVG E
Sbjct: 466 EKRMLPSGARVGFYDDRLRRRFLREKELEDRFPHALANGEFHMYLQPKVALPERRIVGAE 525

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W  P+     + EF+ + E   +I  ++ +M  ++   +  W  +   P   + +N
Sbjct: 526 ALVRWISPEGMLCPN-EFVPLFERDGVIAELDFYMFCQVCALLKRWERE-GRPLFCVSVN 583

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++  +   ++     +  I++       ++  F+ESVV         ++ R+  +G   +
Sbjct: 584 VSRSNFDVSDFFARYERHIAENQVPARYLEFEFTESVVFDRTGEINQVIRRIHALGARCS 643

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  S L+ L  +  D +K +     G T  +K  +I+  I+ +A+++    +A+ 
Sbjct: 644 MDDFGSSYSSLNMLRSLEVDIIKLDQGFFRGDTDMDKARSIVNGIVGIARDMRIETVAEG 703

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           I     +  L  +GC+ +Q      P+  +     
Sbjct: 704 IEDMGQVDFLESVGCNVVQGYVFGKPMPADEFQDF 738


>gi|327396513|dbj|BAK13934.1| diguanylate cyclase/phosphodiesterase [Pantoea ananatis AJ13355]
          Length = 588

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 102/436 (23%), Positives = 198/436 (45%), Gaps = 15/436 (3%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               +F D +T +PNR   +  +  +   +         +  +DI +  +++   GIA  
Sbjct: 160 WNLASFTDLITLLPNRPRLIRDMQQLAVNNPDRRFRLILIDCLDIPQAYELSRTFGIAPV 219

Query: 589 DDVLVSLTR----RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           +++L  +      R+   L+  D+L   +  RF +I          +     +  S+   
Sbjct: 220 ENLLRQIAGLVGVRLQ--LQSDDMLYSFAPGRFALIQPYLGGYNAQSTV--EVLTSLKAD 275

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSD 703
           +      I +    G   + S  I ++E+++ A  A++       G         S R++
Sbjct: 276 LA-DNITIDIDVYTGETEFVSRDIDANEVVRQAVSALHECIHQNMGAMTFDHAYDSRRTE 334

Query: 704 RVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             +I  DL  A++  E LYL Y P + L   + VGLEALI+W HP+ G +  ++F+ +A 
Sbjct: 335 DFLIMNDLAQALKKDEGLYLAYQPKVCLKTGKTVGLEALIRWHHPERGELFPADFIPLAI 394

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I  +  ++++R+   +  W ++     I + +N++ +D   +E   G+ + +    
Sbjct: 395 KTNLISVLTDWVIDRVIIQLKQWNNEF--ELIPVSVNVSERDFSRSEFASGLASKMQAAA 452

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              + + +   E+ ++   + +   L  L+  G  ++LDDFGT  S +SYL  IP D +K
Sbjct: 453 LPTALLGIECLENELITESDIAINGLEALKAQGFVISLDDFGTGYSNISYLQEIPLDVIK 512

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL+           I+RSII M K +  T++A+ +  E  +  L + GCD IQ    
Sbjct: 513 VDMSLIGRMDGDHASRIIVRSIIMMLKELNYTVLAEGVETEATLSLLKQYGCDQIQGYFF 572

Query: 941 ASPLGFNSILKLLKER 956
           + PL  + I   L ++
Sbjct: 573 SKPLPASDIEHWLLQK 588


>gi|308186623|ref|YP_003930754.1| hypothetical protein Pvag_1112 [Pantoea vagans C9-1]
 gi|308057133|gb|ADO09305.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 518

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 98/445 (22%), Positives = 194/445 (43%), Gaps = 25/445 (5%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +   ++ +K +    L  A  D LTG+ NR+SF   L  +         +  T+ ++DI+
Sbjct: 74  VRRSLSAEKNA----LRLAGTDALTGVMNRRSFTAHLAAL-----NTGEVPYTLTLLDIN 124

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K IND+ G   GD  LV+L   +         + R+ G+ F I+  +      +A   
Sbjct: 125 DFKSINDLNGHRQGDATLVALAGLLTTSAGTQSQVFRIGGDEFAIVTAASQAEQALAAAE 184

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              + + +  I        ++ S G AS   +    +++++ A+LA+Y AK    +H+  
Sbjct: 185 SLCQHAAS--IRTGPHTF-LSLSAGIASSACTGQ--ADVVRAADLALYEAKQNTRSHLAR 239

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           F        R    +++++  AV    +     P++ L    I G E L +W       +
Sbjct: 240 FTPDMELRFRQRERLEQEVVAAVSGHAIVPFLQPLVSLRSGNITGFEILARWITASGQTV 299

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ + E L ++ ++ + +L+       +W        + + +NI  + LL   L  
Sbjct: 300 SPAEFLPVVERLGLMDSMTVALLQDAVSATRAWPA-----GLCLSLNITPEQLLRPSLTT 354

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++      P  ++L  +E  VM   + +R  +  L++ GI + LDDFGT  S LS 
Sbjct: 355 CLSRIMQHAG--PVMLELEITEQNVMAISDDAREAIRLLKEAGIGVVLDDFGTGYSNLSV 412

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +    +K + + + G     ++  ++ +++ + + +   I A+ I     ++ L + 
Sbjct: 413 LLGLGITKIKIDQTFIAGIVTGSEQRKVVETLLALCQGLNVVITAEGIEDVATLRWLRKR 472

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCDY Q    + P+       LL  
Sbjct: 473 GCDYGQGYLFSRPVPAGQATTLLAS 497


>gi|194450932|ref|YP_002046174.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205359109|ref|ZP_02667131.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194409236|gb|ACF69455.1| mase1 domain family [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205338430|gb|EDZ25194.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 998

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 IVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVMSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDIVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|12965135|gb|AAK11470.1|AF323438_2 unknown [Pseudomonas alcaligenes]
          Length = 266

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 129/264 (48%), Gaps = 4/264 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +    S R+ ++ DL LA+   E  L + P +   D ++VG EAL++W HP+ G  S ++
Sbjct: 1   MQDAASARLRMENDLRLALARGEFELHFQPQVDARDGKVVGAEALLRWQHPQLGPQSPAQ 60

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQAN--MPPIFILINIASKDLLDNELCEGM 814
           F+ + EE  +I  +  ++L                      + +NI+ +    ++  + +
Sbjct: 61  FIQVLEESGLIVEVGGWVLAEACHFCSRLMADGLVDGERFSLCVNISPRQFRQHDFVDRV 120

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            + +  +    + +KL  +E +V+ N + +   + RL+K G+S  +DDFGT  S L+YL 
Sbjct: 121 ASSLRNSQLPNAMLKLEITEGIVIQNIDDTVGKMLRLKKHGVSFAMDDFGTGYSSLTYLK 180

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P D +K + S +  +        I+R+I+ MA+++   +IA+ +  +  +  L   GC
Sbjct: 181 RLPVDMLKIDQSFVRDATHDPNDAEIIRAIVAMARSLGLALIAEGVEQQDQLDFLQAQGC 240

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
              Q    + PL   +  +LL+ +
Sbjct: 241 HLYQGYLFSKPLPQEAFRELLERQ 264


>gi|119468079|ref|ZP_01611205.1| predicted signal transduction protein containing sensor and EAL
           domains [Alteromonadales bacterium TW-7]
 gi|119448072|gb|EAW29336.1| predicted signal transduction protein containing sensor and EAL
           domains [Alteromonadales bacterium TW-7]
          Length = 846

 Score =  313 bits (802), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/452 (22%), Positives = 192/452 (42%), Gaps = 23/452 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   E  L +A     T + N      +L     +S    N   T+ +I I  +  +N +
Sbjct: 396 RYQRERALYHATHTQQTKLLN----SSKLKQAF-MSLQSQNRSTTLCLIKICHFNSLNTI 450

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGN-------------RFGIILISENNSLK 629
           +    G  ++  +  R+   L      A L  +              F  I     N   
Sbjct: 451 ITSTQGYTLIKHIAERLENELMHEREFANLETDLNNSPRLADLNSGVFACISTKNQNQDT 510

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +  ++     +    + +  +IG +S   S       LK   LA+  AK R  
Sbjct: 511 LKTLLTKVISNLPKQYEIKGLSLQLNYTIGISSANQS-NDFEYWLKRGYLALKDAKGR-A 568

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           + V S  +++     V +   L  A++ ++L L Y P I L++ +++G EAL++W  P +
Sbjct: 569 DRVASSAINNSLIMDVGLAAHLQKAIKTNQLALYYQPQISLVNNQVIGAEALLRWPDPTY 628

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            NIS  E +++AE   +I  + L+++E+  +D++   +  +     I +N+++K+L  N 
Sbjct: 629 KNISIEELVILAEHTGIINELTLWVIEQACKDLVELINSGHKEH-TISVNLSAKNLAINN 687

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E ++ ++ K       +K   +ES  + + +    L+  L  +GI + LDDFGT  + 
Sbjct: 688 LAEKIENILIKHQAPAHLLKFELTESAFVESQDVLIKLVDELSALGIKVVLDDFGTGYAS 747

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL    F  +K + S +           I+++ I MA  +  +I  + +  +   + L
Sbjct: 748 LSYLVNYHFSELKIDKSFIFDLVNNPAHQVIVQTSIDMAHQLNLSITVEGVETQEIHQLL 807

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +M  D  Q    A  L +   +  LK ++ L
Sbjct: 808 KQMNADRAQGYLYAKALPYPEYVNFLKSQYSL 839



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 110/362 (30%), Gaps = 20/362 (5%)

Query: 52  IYVNQGEDFQVFTAADIDGIS--RRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPH 109
            Y+++ ++           +           S   +  W    L N S    + +    +
Sbjct: 50  YYIDETKNQTFDAIIKQPNLLTHAPFSEIPWSFTQQNYWLFLDLENKSQESQKVVAHFDN 109

Query: 110 YRLVGSHFFSPDLGSRRIISV----TPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEI 165
                   +  D  +  + +        +           + +        +    +++I
Sbjct: 110 PMADHLTVYRLDKNNHILKTYKLGDREKKLTLFQYSVPHINFLM----EQKSTQRLVIKI 165

Query: 166 STPNLP--QIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFA 223
            T  +    I L+    + D + S T   GI  GV  + A++  + Y   +  + +    
Sbjct: 166 DTVGISKTPINLYRDKEFVDLMRSQTGIWGIFAGVLLMAALYNLVLYFGIKDRVYLVYIG 225

Query: 224 MAWVVLGYISIDFGFLSKLVNL-PSGELLIWRACSEIALSSSLIIFLFMYLHWNR---WH 279
                L  + I  GF   L  L            S  A+S   + F  M+L +++   W 
Sbjct: 226 YIISALILMGIVLGFGFYLWPLEWQLFFHHKVIVSNYAVSFFTLAFCTMFLRYHKDKCWR 285

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
             +     S +  + I          + A +    LA + +  T  I    + G+  A  
Sbjct: 286 YTMSKALLSLMFVMGIASFFIP--ENIAAPLFFCVLALLYVACTILIYKKLLSGFRWAKF 343

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
            + +W+ + +  +   + +T  +D           LV I+  I    +       Y  + 
Sbjct: 344 YVFSWVPLILGAVIQPLELTGVIDYSFTSRH--AFLVAILCEIVLMAMALADRVRYQRER 401

Query: 400 IF 401
             
Sbjct: 402 AL 403


>gi|56412976|ref|YP_150051.1| hypothetical protein SPA0743 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361905|ref|YP_002141542.1| hypothetical protein SSPA0700 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127233|gb|AAV76739.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093382|emb|CAR58833.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 996

 Score =  313 bits (802), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/616 (17%), Positives = 219/616 (35%), Gaps = 19/616 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +     R   +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFRHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G    L + L    
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLTPHI 913

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G D I
Sbjct: 914 ADYLLLDSDLIANVHENLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDLI 973

Query: 936 QDSHVASPLGFNSILK 951
               +A     + +L 
Sbjct: 974 YGDTIAEAQPLDLLLN 989



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|90022674|ref|YP_528501.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89952274|gb|ABD82289.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 593

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 184/441 (41%), Gaps = 14/441 (3%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             +DIT  +  L+        D+LT I N   F +  TT +  +    N +  V++ DI+
Sbjct: 154 SIHDITTNQNPLQQ-------DSLTEIHNLSYFYNYATTAIFRAQRA-NAQLAVLLFDIN 205

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++ IN   G   GD +L  + +R   +++  + +ARL  + F II  + N+  +     
Sbjct: 206 DFELINQQFGRHTGDQLLQLVAKRCENIVRHTECIARLYDDTFAIITDTLNHEHEAYPLV 265

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +++    P    +++I  T SIG A         +  +K A+ A   AK     +VE 
Sbjct: 266 TRLQQCFDSPFETSQKQIVATPSIGVAFLPQ-PADLNHWVKQADAAKTQAKASAKTNVEF 324

Query: 695 FRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
              S+    +    +   +   ++  E   V+       D   +  EA  +W     GN+
Sbjct: 325 ASESASAGYKRTQSVAAKIEKGLQGREFSTVFQSYYCDDDSNPLYAEAFSRWRSTSLGNV 384

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +  EF+    +  M+  +   +L  +   +      AN P     +NI++  L D   CE
Sbjct: 385 APREFLPALSQNSMLDELTKQVLANV-AQLQEQALAANRPIGKFSVNISTAQLHDRIFCE 443

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
                +S    S + I L  SE   +      +  +  L + GIS  LD+FGT  + ++ 
Sbjct: 444 NFLHWLSVNDLSSNTICLEISERESINAILACKSNIHFLHQQGISFALDNFGTGNTAMTQ 503

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + ++       +   A+  S+I MA  +   ++A+ I  + +   L   
Sbjct: 504 LADLPIDYLKIDRAITQNIDTNKPMQALSSSVIKMAHKLGIKVVAEGIETQEEFYVLRAF 563

Query: 931 GCDYIQDSHVASPLGFNSILK 951
            CD+ Q  +   P   +++++
Sbjct: 564 DCDFYQGFYFGQPCNSHTLMQ 584


>gi|298492566|ref|YP_003722743.1| diguanylate phosphodiesterase ['Nostoc azollae' 0708]
 gi|298234484|gb|ADI65620.1| diguanylate phosphodiesterase ['Nostoc azollae' 0708]
          Length = 353

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 160/333 (48%), Gaps = 17/333 (5%)

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH----- 686
                +   +  P+ +++  + + +S    + +  +      L+  ++A  +        
Sbjct: 22  QIGGDISHELRTPLTVIQVALDILSSGKLGNLSQQE------LRMVDIATNNVDRLMRLT 75

Query: 687 ---RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
               G    ++  +S     ++ ++ DL +A+  ++  L Y PI+ L   EI+G E L++
Sbjct: 76  NAIEGEPEAQTTFLSREALAQLRLERDLKMALIRNDFTLCYQPIVSLKQYEILGFEVLLR 135

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFILINIA 801
           W HP+ G IS  +F+ +AE+  +I  I  ++L+     + +W++Q       + I +N++
Sbjct: 136 WQHPELGTISPEQFIPLAEKSNLICDIGTWVLQTACHQLRTWQEQFPDNYDNLRISVNVS 195

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S+ L + +L   ++ ++ +T      + L  +ES +M N   ++  L +L+ +G+ + +D
Sbjct: 196 SRQLANCDLITQVEQILQETGLKSCNLVLEVTESAMMENAVTAKKTLEKLQSLGVLVYID 255

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DFGT  S LS L  +P + +K + S +          ++++I  +A  +   +IA+ +  
Sbjct: 256 DFGTGYSSLSRLCELPLNVLKIDRSFVQKLNSPSGNQVVQAITNLAHTLGLEVIAEGVET 315

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                +L  +GC+  Q    A PL  N++ KLL
Sbjct: 316 VEQFLKLQLLGCNQGQGYFFAKPLENNAVTKLL 348


>gi|298717541|ref|YP_003730183.1| signaling protein YkoW [Pantoea vagans C9-1]
 gi|298361730|gb|ADI78511.1| Signaling protein ykoW [Pantoea vagans C9-1]
          Length = 590

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 198/436 (45%), Gaps = 22/436 (5%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +PNR   +  L  +   +         +  +DI +  +++  +GIA  + +L  +
Sbjct: 167 DVITHLPNRPRLIRDLQQLTVTAPHSRFRLILIDCLDIIRAYELSRAVGIAPMEKLLRQM 226

Query: 596 TR----RIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFAIAMRKSIAMPINLLE 649
            +    R+   L   + L   +  RF I+       ++  + D    MR  +A  I L  
Sbjct: 227 AQDTAQRLN--LPENETLYTFAPGRFAIVQPYSGRYSAHNMIDLFNGMRADLAENITLD- 283

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIK 708
               +    G   +   ++ ++E ++ A  A++ A               S R+D  MI 
Sbjct: 284 ----LDVFTGETEFVPGQMDANETVRQAVSALHEAIDENISAMSFDESYDSRRTDDFMIM 339

Query: 709 EDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            DL  A++  E LYL + P + L   + VGLEALI+W+HP+ G +  SEF+ +A +  +I
Sbjct: 340 NDLAQALKKDEELYLAWQPKVCLKTGKTVGLEALIRWNHPERGELFPSEFIPLAGKTNLI 399

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++++     +  W    N+  I + IN++ +D    +  + + A ++      S 
Sbjct: 400 SDLTNWVIDHALEQLARWNRDYNL--IPVSINVSERDFARPDFADQLVAKLAAAQLPNSI 457

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +   E+ ++   + +   L  L+  G  ++LDDFG   S +SYL  IP D +K + SL
Sbjct: 458 MGIECLENELITKSDVAIKGLEALKSHGFVISLDDFGVGYSNISYLQDIPLDVIKIDRSL 517

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++   E   +  I+R II M K +  T++A+ +  E  +  L   GCD IQ    + PL 
Sbjct: 518 ISRMGEDDASKIIVRCIIGMLKELNYTVLAEGVEAEATLGLLKTYGCDQIQGYFFSKPLP 577

Query: 946 FNSILKLLKERFPLVK 961
            + I   L   +P  +
Sbjct: 578 ASDIEHWL---YPKSR 590


>gi|200388739|ref|ZP_03215351.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199605837|gb|EDZ04382.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 998

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 IVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDIVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|307825154|ref|ZP_07655375.1| diguanylate phosphodiesterase [Methylobacter tundripaludum SV96]
 gi|307733902|gb|EFO04758.1| diguanylate phosphodiesterase [Methylobacter tundripaludum SV96]
          Length = 373

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 133/257 (51%), Gaps = 3/257 (1%)

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R+ +K +L LA+E  +L L Y   +     +++G+EAL++W+HP++G I+S +F+ 
Sbjct: 118 RTDSRMSLKAELRLALEKRQLMLYYQTQVN-STRQVLGVEALLRWEHPQYGLIASDQFIP 176

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IAE+  +I  I+ ++L+     +  W+       + + +NI+ +     +  E ++ ++ 
Sbjct: 177 IAEQSDLILLIDTWVLQTACAQLKQWQSDPLKRDLLLSVNISPRQFCQPKFVEQLRRILE 236

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T    +R++L  +ES+++ +   +   +  L  +G+  ++D+FGT  S LS+L  +P D
Sbjct: 237 ETGIDATRLRLELTESLMLHDIANTIKKIKALNLLGVRFSMDNFGTGYSSLSHLKKLPLD 296

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +  LM           I+++II M + +   +IA+ +  E     L ++GC   Q 
Sbjct: 297 QLKIDQFLMRDIAIDGCDAIIVKTIIDMTRKLGIDVIAEGVESEQQFACLKQLGCSAYQG 356

Query: 938 SHVASPLGFNSILKLLK 954
                P+  N   K++ 
Sbjct: 357 YLFGKPMPLNEFEKMIS 373


>gi|114564129|ref|YP_751643.1| diguanylate phosphodiesterase [Shewanella frigidimarina NCIMB 400]
 gi|114335422|gb|ABI72804.1| diguanylate cyclase/phosphodiesterase / diguanylate
           phosphodiesterase [Shewanella frigidimarina NCIMB 400]
          Length = 754

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/726 (15%), Positives = 253/726 (34%), Gaps = 43/726 (5%)

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
              S   L +       L  + I+FL   L   R++    ++    I   + +  ++   
Sbjct: 46  TFSSAFQLNYLWVIANTLGFTSILFLL-LLASKRFYHACAHLLLVAIVLASFVMNLTLTD 104

Query: 304 PMVTASIARITLASIVLYYTYFI----IYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
             +    + +      +          I + +       +++    L     I   +   
Sbjct: 105 LTLAKIGSMLIFVCPAIALILLGRRVAICYALLNIAPFYIILHDINLSQYTNINKQLPDA 164

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                 ++       + L V        +   AT   +  + S  E        S     
Sbjct: 165 SWYITGVVFLFFNICVPLAVARTIVAAKRLNEATLNSNAYLKSKNELYHTFFAESTTPKI 224

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D +            +L L            L  +  N         D+    +    
Sbjct: 225 IVDDMGKITDANQQAIDLLKLPKT--LNSETLLLSSVMPN-----LKTCDAAKQEQILHF 277

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK-------KSLEGILCN 532
              ++               R +     D    +   +D + ++          +     
Sbjct: 278 NNTYQ---------------RVVHQQLTDANFCVYEFHDCSAEQSIKANLAAMEQENRRL 322

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            ++D  T +PNR  F  +   ++            V+V        +N   G      + 
Sbjct: 323 RYRDAQTQLPNRDWFELQCDRLIAKYRKG----FYVVVAQSANNDYLNIKFGNHNSQTIT 378

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            +  +R+   ++ P + A +   +   IL S N +  +      ++  +    NLL  + 
Sbjct: 379 KTAFKRLRNDIEGPLLCAHIGPGKIAFILGSLNETD-LYSALPKIKHILDEDYNLLGVKS 437

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + +   G A        S +++ +A  A+  A       +     S    ++  I   L 
Sbjct: 438 SQSFLFGIAHCPEHGDASGKVVAHAIEALKLANTHDVFSLYDQTNSQSFLEKYEISMLLD 497

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++  EL + Y P +     + +GLEAL +W+ P  G +S + F+ IAEE  MI  +  
Sbjct: 498 EALQQGELTVHYQPKV-TASGQCIGLEALARWNSPILGTVSPAVFIPIAEEYRMISRLTD 556

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +++++   I  W  Q     + + INI+  D    +    +   ++    SP +I+L  
Sbjct: 557 LVVQKVCSQINQWTQQGLNC-VPVAINISLIDFSQTDFMSKLVKHLADFTVSPKQIELEL 615

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E+ +  N   S +L+  L+  G ++++DDFG   S ++ L   P + +K + SL++   
Sbjct: 616 TETSLEANQAHSLILMKTLQSWGFTISVDDFGVGYSNIARLADYPINKLKLDRSLISQVT 675

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           ++ ++ +++R+I  M + +    +++ +     +K +  MGC   Q  + + P+      
Sbjct: 676 TSARQQSLVRAIHNMCEELSIKCVSEGVETAEQVKIMADMGCKEFQGFYFSKPITPKQFF 735

Query: 951 KLLKER 956
             + ++
Sbjct: 736 AHVSQK 741


>gi|194470556|ref|ZP_03076540.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358239|ref|ZP_02654506.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194456920|gb|EDX45759.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335807|gb|EDZ22571.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 998

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|75906871|ref|YP_321167.1| diguanylate phosphodiesterase [Anabaena variabilis ATCC 29413]
 gi|75700596|gb|ABA20272.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Anabaena variabilis ATCC
           29413]
          Length = 403

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 140/308 (45%), Gaps = 6/308 (1%)

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
           +      +G   + +   T +E+L      +          +    +        +++  
Sbjct: 89  DFRQGMDMGADDYLTKPFTRAELLSAVMNRLERQATLKKYLINQNGIKISSPKTQLLEMS 148

Query: 711 LCLAVENS---ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           L   ++     E  + Y PI+ +   +IV  E+L++W  P+ G +S SEF+ +AE   +I
Sbjct: 149 LHKVIQQQKFQEFEVQYQPIVDIASGKIVAAESLLRWHSPELGFVSPSEFIPLAESTGLI 208

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  +++  +   I SW D      + I +N+++ +    +L + +   +     +P  
Sbjct: 209 VPIGQWVIANVCHQIKSWHDSGVDF-LTISVNLSAMEFNKPDLIQRITESLKTNNIAPHY 267

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ES++M +   +   + +L+ +G+ L +DDFGT  S L YL  +P +T+K +   
Sbjct: 268 LEIELTESMIMQDLNSAIFTMNKLQSLGVRLAIDDFGTGYSSLIYLKNLPVNTLKIDRYF 327

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    + +   AI ++++ MA N+   ++A+ +  E ++  L +  CD +Q    + PL 
Sbjct: 328 IHNVAKDKQKSAITKALVEMAHNMNMQVVAEGVETESELYFLKQNKCDAMQGFLFSRPLP 387

Query: 946 FNSILKLL 953
                  L
Sbjct: 388 AVEFENFL 395


>gi|254485651|ref|ZP_05098856.1| EAL domain protein [Roseobacter sp. GAI101]
 gi|214042520|gb|EEB83158.1| EAL domain protein [Roseobacter sp. GAI101]
          Length = 496

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 192/435 (44%), Gaps = 10/435 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D +TG+  R +F +    + D +        T     ++++ ++ND  G A  D V+  
Sbjct: 54  RDGITGLLQRSAFEELTNQVFDRTEELGWKSATFAFA-VEEFGELNDRYGKAAADQVIAR 112

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
              R+   L+  D +  L  +RFG+ L      +       A  +++++  P+++    I
Sbjct: 113 TGERLIAALRDRDCVGVLDDSRFGVCLDPVRHLDLELCIQMAGRLQRAMEEPVSVDGTVI 172

Query: 653 TVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKE 709
            ++ S+GF     + +      L+ A  A+  A  RG + + +F             + E
Sbjct: 173 YISVSVGFCQQSRTPEKNGDAWLEAASTALSAALRRGPSAIRAFSTKMLPQPEHSNALME 232

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+E+ ++   + P I     EI G EAL +W HP  G ++ S+F+   E   +++ 
Sbjct: 233 EVAQALEDGQIMPWFQPQISTDTGEITGFEALARWVHPTRGVLNPSDFLQALERAELLER 292

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   M+      + +W       P  I +N A  +L +  L E +   + +   +P R+ 
Sbjct: 293 LAELMMYHSFAALKTWDTAGVKVP-QIGVNFAGSELSNPRLIEKITWELDRFDLTPDRLA 351

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+VV   P+      +  L K+G  + LDDFGT  + ++ +     + +K + S +
Sbjct: 352 IEILETVVASAPDDMITRNINALGKLGCRIDLDDFGTGHASIASIRRFSVNRIKIDRSFV 411

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  ++  ++ +I+ MA+ +    +A+ +    +   L ++GCD++Q   +A P+  
Sbjct: 412 MKADRDPEQQRMISAILTMAERLGVETLAEGVESVGEHVILAQLGCDHVQGFGIARPMPI 471

Query: 947 NSILKLLKERFPLVK 961
              L  ++     ++
Sbjct: 472 EQTLSWIETHCTKLR 486


>gi|320180279|gb|EFW55214.1| RNase II stability modulator [Shigella boydii ATCC 9905]
          Length = 557

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 200/466 (42%), Gaps = 15/466 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G +        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGISLSPEHGSDSATIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGHWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
              ++ ++ +  +    I +  +ES ++ N E +  ++ +  ++G 
Sbjct: 510 FTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGC 555


>gi|160893867|ref|ZP_02074650.1| hypothetical protein CLOL250_01421 [Clostridium sp. L2-50]
 gi|156864519|gb|EDO57950.1| hypothetical protein CLOL250_01421 [Clostridium sp. L2-50]
          Length = 1273

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 100/527 (18%), Positives = 212/527 (40%), Gaps = 59/527 (11%)

Query: 461  RDNFRTILDSFVGYRRGRLQY---EFRVRAADNQFHWMIIRI-----RPMSNSNGDILRY 512
            ++  R  L S    +   +     ++  + +D    ++  RI      P+ ++  +I+  
Sbjct: 773  KETVRRELQSISSKKGALIINHIPDYPYKTSDLYSFFLENRIWSMYSVPIKDNKSEIIGR 832

Query: 513  IGIAN--------------------DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
            I I N                    DI   +   E        D +TG  NR  ++D + 
Sbjct: 833  IIIFNPQLHSGDLKLMNLLSLYIGNDI-VSRALAEERNYEVTHDRITGAYNRICYMDYIN 891

Query: 553  TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
                     +     +++IDI++ + I D  G    D++++    R+ + +     + R+
Sbjct: 892  ------RRQNLESVGIVIIDINEVRNIYDEFGQFFVDNLMIDYY-RLLDKVFPKSCIYRI 944

Query: 613  SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
              + F +I  + +    +        +++   I + +     TA IG+  W   +     
Sbjct: 945  GDDDFAVICENISQCDFLDQV-----RALKGQIKIGD----FTACIGYV-WDDYEKDIKR 994

Query: 673  MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL-CLAVENSELYLVYHPIIRLM 731
            M  +A   +Y  K +        +          +  +L    +E+   ++   P +   
Sbjct: 995  MENHAYDMLYMEKQK-----WYDQKDEHSYKWSTLTRELVKKDIEDGMFFVYLQPKVDYS 1049

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
            ++   G EAL+++  P     + +  +   E+   IK ++LF+LE + + +I W+ +   
Sbjct: 1050 NDHCYGAEALVRYAKPD----NLANVIDRLEKSRNIKYMDLFVLENVCKMLIRWKKEGYN 1105

Query: 792  PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
              I I  N +   LL+ ++ E + A++         I++  +ESV     E    +  +L
Sbjct: 1106 L-IPISCNFSRISLLEEDMPERINAIVESYGVPKDMIEIEITESVGEMEHEMVTRIANKL 1164

Query: 852  RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
               G  + +DDFGTK S +S L  + FD +K + S++    +      ILR ++ M  ++
Sbjct: 1165 HTAGFRIAMDDFGTKYSNVSILSSMKFDVIKLDRSMVYNIDKNIASRTILRHLVEMCTDL 1224

Query: 910  ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
                IA+ +  +   + L  MGC++IQ    + P+   S  ++  +R
Sbjct: 1225 GVECIAEGVETKKQAEYLKEMGCNHIQGYLYSKPVNIESFEQVYMKR 1271



 Score =  157 bits (397), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 120/303 (39%), Gaps = 18/303 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDI--ATILGLASGSMHGPIRNWLPYIHINDRD 462
           E   L   GS ++++ + +  D +  +  +   TI           +      I+  D+ 
Sbjct: 273 EMLKLVAQGSDELLFSYTVEDDSMVISKYMDGRTITVFDDKDFAANLAQ-CQLIYSEDKK 331

Query: 463 NF---RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
                   L +        ++ +F     +  + W    +  ++++NG + + +G    I
Sbjct: 332 TVSDVLAELTAVKDTETVEIRVDFI---GNGMYLWHRATLVSVADTNGVVKKIVGKLYSI 388

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
            E+K   + ++  A +D+LTG+ N  +F+ +++  L      D     + +ID+D +K +
Sbjct: 389 HEEKLQSQELILRAERDSLTGVYNHSTFVSKVSRFLA---EFDETLCALYMIDLDDFKLV 445

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           ND LG   GDD+L      +  +         RL G+ F + +    +       A  + 
Sbjct: 446 NDALGHYAGDDLLCDTAVVLESVANTYGGFSGRLGGDEFSMFIPDVVDEDTAYMVAKTLN 505

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           K I       E     +ASIG A  T SK      +   A+ A+Y++K +G +    F  
Sbjct: 506 KGIRAIKCKAEH----SASIGIAVDTISKSLKFDSLYYKADQALYYSKRQGKDRCMLFCE 561

Query: 698 SSF 700
              
Sbjct: 562 KMD 564



 Score = 54.6 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 38/109 (34%), Gaps = 2/109 (1%)

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
               +        ILG ++  +          +   D +++  I+ + +  R        
Sbjct: 19  DMKILKVDEGFEQILGYSAEDVERLQLYVKDIMLDEDWEDYTKIIYAKMSSRGEAY-LGH 77

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           R++  + +  ++    R   +  G++   I +  DIT  KK  + +   
Sbjct: 78  RLKKKNGEIIYVFCFGRAFQSEEGEMCGEI-LITDITNTKKLSKQLENL 125



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPI 449
               +  +          +      V  +DI   ++     +     +  L  G +    
Sbjct: 129 NSELNMELADKNRMLESILNNLAGGVGVFDIGNKKITVEYISESFYKMFDLKKGQLGTEG 188

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN--QFHWMIIRIRPMSNSNG 507
             ++      DR   +  +   +   +  +  E+R    +N   ++W+ + +  +  +  
Sbjct: 189 NEYINLAFEEDRKELKRQIKETLLSNKMTI-GEYRFINKNNPESYYWVQVCLS-LLAARK 246

Query: 508 DILRYIGIANDITEQKKSLEGILCN 532
            +     +  DIT++KK        
Sbjct: 247 SVFSICAVCVDITDKKKEELEKSAQ 271


>gi|127512778|ref|YP_001093975.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
 gi|126638073|gb|ABO23716.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
          Length = 790

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 195/449 (43%), Gaps = 12/449 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-----SATDDNLRPTVM 569
              +   + K    +   A  D LTG+PNR  F+DRL   +       +         ++
Sbjct: 341 HIRNAISRMKLKANLTEMALYDGLTGLPNRTLFIDRLNQAIAKLNDACNDAASAAGVGLV 400

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           ++DID +K +ND  G  +GD++L     RI   +   D   RL G++FG++L+  N+  +
Sbjct: 401 LLDIDHFKAVNDTYGHHLGDELLKVFAERIHAAIASQDTFCRLGGDQFGLLLVDINSEEQ 460

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             +   A+R+ +   ++L    +T++ S+G  +  S  +  +++L+  + ++  AK  G 
Sbjct: 461 CLERVEALREQMQAVLDLGGISLTLSVSMGLVTCFSPGMQVTDLLRMGDQSLLRAKLMGR 520

Query: 690 NHVESFRVSSFRS-DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
           + +  F            I +    A +  ELY  + P  RL D +++G EAL++W HP+
Sbjct: 521 HRLCVFTSGEQAELQEAQICQAFQQAADQGELYFSFQPQYRLKDGKLLGAEALLRWQHPR 580

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G IS    +        ++ ++  + + I   +  +          + +NI        
Sbjct: 581 LGTISPRRLLAPLRRQGALELVDAVVAKLILAHLKRYHGDYP-EGFRLSVNI---ACDGC 636

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  +  + +   S + +   ES +  + E     + R + +G+ ++LDD G   +
Sbjct: 637 ALFDALGRMAGEGIELASYLGIEIPESSLGASFEAVVSCIARAKSLGVLVSLDDVGASHA 696

Query: 869 LLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
              YL    F+ +K    L++          IL +II +A  +    +A+ I      + 
Sbjct: 697 TFKYLQEFRFNRLKIAQGLISPMEMAYDNQVILETIINLASTLNIDTLAQGIETREQYQT 756

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  +GCDY Q   +   +    +L +L E
Sbjct: 757 MQALGCDYGQGEFMNPSVSEEKLLLMLTE 785


>gi|205353266|ref|YP_002227067.1| hypothetical protein SG2155 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273047|emb|CAR37995.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628354|gb|EGE34697.1| PAS domain-containing protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 996

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 911 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 81.5 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|192361865|ref|YP_001983539.1| putative sensory box protein [Cellvibrio japonicus Ueda107]
 gi|190688030|gb|ACE85708.1| putative sensory box protein [Cellvibrio japonicus Ueda107]
          Length = 737

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/437 (20%), Positives = 189/437 (43%), Gaps = 15/437 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++++   +L  A  D+ TG+   Q F+D+L      S         +++I +     I  
Sbjct: 303 REQAEAELLHLAHFDSQTGLCKTQRFVDQLDDFFHCSQAPIRELKEILIIKLADLDTIVR 362

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G A  + ++ +   ++  +     + A L    F + +   N        A  +   +
Sbjct: 363 TFGFARAETIVNAFAVQLKNI--EGGLAAYLGRGVFALFMDRCN--------ATQLLDQL 412

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           +  ++  E  + V    G + W     ++S++L++AE A+  +  R    +         
Sbjct: 413 SQRMSQTEPGLNVQLVGGSSYWPDQGRSASKLLRHAETALAMSLARHKRWLAYEPDMEPS 472

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + I            +Y V+ P + L   +I   EAL++W HP+ G +    F+ + 
Sbjct: 473 RLDLDIISLFIDGNVQG-IYPVFQPQLNLRTGKIHSAEALVRWHHPRLGYVPPIVFIPLL 531

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I+ I   M++   R     R         I +N+A+ DL +  L + +   + + 
Sbjct: 532 ENSGLIEQITAVMIDEAVRVAAKLRAA--NLACSISVNVAAYDLTETNLLDIITQALVRH 589

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 ++L  +E+ V  +P+R + +L +L ++G+  ++DDFGT  S LSYL + P + +
Sbjct: 590 QGRAGDLRLELTETSVAADPQRVKKMLTQLSELGVYTSVDDFGTGYSSLSYLSHFPINEL 649

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +  +I+RS + MA+ +    +A+ +  +  ++ L R GCD  Q   
Sbjct: 650 KIDRSFVGDMLINPRNHSIVRSTLLMARELGLVAVAEGVEDDKTLQMLKREGCDLAQGYV 709

Query: 940 VASPLGFNSILKLLKER 956
           +A PL  +  ++ +   
Sbjct: 710 IAKPLPEHQFIEFMHAH 726


>gi|254283261|ref|ZP_04958229.1| signal transduction protein [gamma proteobacterium NOR51-B]
 gi|219679464|gb|EED35813.1| signal transduction protein [gamma proteobacterium NOR51-B]
          Length = 429

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 171/412 (41%), Gaps = 6/412 (1%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R + + RL  I+            +++ID++  ++IN      +GD ++  +   +   +
Sbjct: 9   RSACIARLEEIVASGFQSGRCTG-LLLIDLNNLRQINHRHSFRLGDVMINEVLETLRAGV 67

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           K    + R+ G+ F ++L        ++  A  + +S+A  + +          IG +  
Sbjct: 68  KDCQNVFRIGGHTFAVVLPDLEFPGYLSVAAARLSESLADALEMESDFTPAKVHIGASVS 127

Query: 664 TSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
                ++ +ML  AE+ +   +  RG     +       S    +      A+  SE  +
Sbjct: 128 AGKPASALDMLARAEMHLERVREDRGLAFESTAITDDVSSFDEQLGRQFEQALHRSEFEV 187

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + P +      ++G EAL++W   + G +S    + +A +      +   ++  +AR+ 
Sbjct: 188 YFQPQVSTATGAVLGAEALLRWSRAEQGFVSPERVIHLAAQSGKTFELARSIINNVARNA 247

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W  +       + IN+++  L   +L + +    S        + +  +E  ++ + +
Sbjct: 248 KAWCCE--EADFKVAINVSADLLGTVDLVDILDRASSIWDVPHKNLTIEITEQTLVSDIQ 305

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILR 900
            S+ LL  LR  G  +++DDFGT  S LSYL  +P   +K + S +     +++   ++R
Sbjct: 306 SSKRLLRDLRDRGYGISIDDFGTGYSSLSYLRQLPATELKIDRSFVNTLLLSDEDRELVR 365

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            I+ M       ++A+ +        L +MGCD +Q   +  P+        
Sbjct: 366 IIVDMGHLFGMQVVAEGVENLETRYTLEKMGCDVLQGYLIGHPMPAVDFESW 417


>gi|224583387|ref|YP_002637185.1| hypothetical protein SPC_1596 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467914|gb|ACN45744.1| hypothetical protein SPC_1596 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 998

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 219/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSAPLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|225851185|ref|YP_002731419.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225646290|gb|ACO04476.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 632

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 110/435 (25%), Positives = 197/435 (45%), Gaps = 25/435 (5%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E  L   + D LTG  NR    +        S        TV VIDID +KKIND  G 
Sbjct: 216 YEKKLKKMYYDPLTGAYNRLFLYE-------NSDLFKFYPFTVFVIDIDHFKKINDTYGH 268

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI----SENNSLKIADFAIAMRKSI 641
            +GD VL  LT+RI   ++  DIL R  G  F +++     S      I + A  ++  I
Sbjct: 269 EIGDFVLKELTKRINRCIRDNDILIRYGGEEFLLLIRANPVSPEYKKNILNLAKRIKNEI 328

Query: 642 A-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P ++   ++ VT SIG   +   + +  E +K+A++A+Y AK +G N +E + V+  
Sbjct: 329 EFYPFDIENIKLKVTVSIGINFY-EHEKSIEEAIKHADIALYSAKQKGRNRIEVYNVALK 387

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            S++      +  AVE + +   Y PII L     V  E+L++        +  +EF+  
Sbjct: 388 VSEKN--INVIKEAVEENRIVCHYQPIIDLSTITAVKFESLVRIITKDGEVLYPNEFIPP 445

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            +   +   I   ++E       + +       + I IN+++ D+ + ++ +    +  K
Sbjct: 446 IKRTYIYVDITKKIIE------FNKKILQKYKDVEISINLSAMDIYNEDIIKLFADMFEK 499

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                SR+ +   ES  + N +  +  L +L+ IG  + +DDFG   S  S++  +  D 
Sbjct: 500 --DEASRLTIEILESEEIENYDVFKKQLSKLQFIGCKIAIDDFGAGYSNFSHIIELNPDY 557

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +GSL+        A  I+++I   A ++   ++A+ I     ++++   G  Y Q  
Sbjct: 558 LKIDGSLIQKIDVDNKAYSIVKAIKHFADDLNIKVVAEYINNREILEKILNTGICYGQGY 617

Query: 939 HVASPLGFNSILKLL 953
           ++  P+    + K L
Sbjct: 618 YLQPPIPPEELKKFL 632


>gi|213583193|ref|ZP_03365019.1| hypothetical protein SentesTyph_19083 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 664

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 220/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 55  VVWALLAVSLV--------RHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 106

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 107 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 166

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 167 KGPLLEDIYRA-NRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 225

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 226 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 284

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 285 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAV 344

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 345 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 404

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 405 LTSSKGMMPLEEQWHMIKNNLLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 464

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +     R   +         + + + +++  L    L + +   
Sbjct: 465 RAGLADSALHHALDRRVFHEFFRHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 521

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 522 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 578

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 579 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 638

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 639 DLIYGDTIAEAQPLDLLLN 657



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 13/138 (9%)

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG +   +      +       D +N    L+  V         E R    +    W ++
Sbjct: 3   LGYSQDEL--RTMTFQQLTWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALL 60

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTIL 555
            +  + + +   L +I    DI + K+S +       +  +T   N   F   +RL   L
Sbjct: 61  AVSLVRHKDNQPLYFIAQIEDINDLKQSEQENQRLMER--ITQ-ANEALFQEKERLHITL 117

Query: 556 DLSATDDNLRPTVMVIDI 573
           D           V+ ID+
Sbjct: 118 DSIGE------AVVCIDV 129


>gi|304312858|ref|YP_003812456.1| Predicted response regulator [gamma proteobacterium HdN1]
 gi|301798591|emb|CBL46821.1| Predicted response regulator [gamma proteobacterium HdN1]
          Length = 709

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/546 (21%), Positives = 230/546 (42%), Gaps = 26/546 (4%)

Query: 406 RQSLAVLGSGD------------IVWDWDIVRDRVTTTPDIATIL-GLASGSMHGPIRNW 452
           R    V   GD             +   D     +        IL G +   +   + + 
Sbjct: 140 RYRRIVDQIGDKSEGSIIESDTEALLALDAEGKILFANYAAECILRGRSRFLVGKYMESM 199

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           L         +++      V  +   LQ +   +  AD +         P+     + +R
Sbjct: 200 LDEPVPALVSHWQEHPIKTVTGKEQILQIDSATLWRADGEPIHAKFAAIPLF--EQEEIR 257

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           ++    +  E ++S E I   +  D +TG+P R  F + +  +L  +   ++    ++ +
Sbjct: 258 HVIAFRETKETRESKEKIASLSHSDTITGLPTRVRFQELMDKLLQKARQRNHY-CAILHV 316

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D ++ +N+ LG  +GD +LV +T RI +L++  D++ R+  + F I +          
Sbjct: 317 DLDHFRNLNESLGHEIGDQLLVQVTARIKQLIRREDVVGRMESDEFVIAMGYIEQPENAG 376

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             A  +   +  P  L   EI  +AS+G A +  S  +   ++KNA+ A + AK  G + 
Sbjct: 377 LVARKLVDRLREPYLLRGHEIYSSASVGIAIFPQSGDSVDVLIKNAKTATHRAKVLGRST 436

Query: 692 VESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            + F V   +    R+  + +L  A+E  EL +   P++ +    ++     +QW H K 
Sbjct: 437 YQYFTVEMNKELAYRLRTEFELRKALEKQELLVSLRPVVDVAKGRVMAYTVALQWPHAKR 496

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD--LLD 807
           G + ++EF  +AE+  +   +  +  ++        + + N P + I   I++    L  
Sbjct: 497 GLLEAAEFASVAEDAGLSADLCKWQWQKGLSLARQQQVKDNEPHVLI---ISASQAFLSQ 553

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            ++   +   +      P+RI ++ +E V M   + +   L  LRK G    +D+FGT  
Sbjct: 554 EDIVPWLIQAVKDAHIDPARIVVALAEGVTMTREQATVETLLTLRKQGFEFAIDEFGTGF 613

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + L  L  IPF  V  + +L++G   +R   AI+  I+ +AK +   ++A  +  E    
Sbjct: 614 ASLQMLRRIPFSAVVLSDALVSGLGNQRTEDAIVDGILYLAKQLGLQVLAPGVSNEQQAA 673

Query: 926 ELTRMG 931
            L   G
Sbjct: 674 FLQLRG 679


>gi|225388914|ref|ZP_03758638.1| hypothetical protein CLOSTASPAR_02655 [Clostridium asparagiforme
           DSM 15981]
 gi|225045023|gb|EEG55269.1| hypothetical protein CLOSTASPAR_02655 [Clostridium asparagiforme
           DSM 15981]
          Length = 440

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 165/403 (40%), Gaps = 10/403 (2%)

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
             +     ++ + I +++  N + G   GD +   +   I   L   + +A +    F +
Sbjct: 35  RKNPEEYALISLKIKRFRIFNRLFGREAGDWLAGQVYEAIRTWLGEDEYVAHIRLGYFNL 94

Query: 620 ILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++    +  +I    I +   I   P      ++     +G    T+          NA+
Sbjct: 95  LVHMPEDYDEIFQCVIKLNAQIRDWPYGEAYGKVYSG--MGVYRLTNQPEDFFTAQYNAD 152

Query: 679 LAM----YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           +                V              +++++  A+++ ++ L   P + L   E
Sbjct: 153 ICRVESPESVLRNSHFEVYGKTHHDTNLGSYNMEQNIRPAMDHEDIKLYLQPKVDLKTGE 212

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           +   EAL++W  P+ G I  +EF+   E+  +I  ++L++ ER+ + I  W +      I
Sbjct: 213 VTQAEALVRWIDPQKGMIPVAEFLPELEKNGLIGDLDLYLFERVCKHIRRWLEVYGK-KI 271

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++S         +  + +  K       I+    ES+V+   ++ + ++ +LR+ 
Sbjct: 272 RISVNLSSDMFNYRYFFKYYEEVYEKFPCPKDCIEFELLESIVLNQVDQVQKVVEQLRRF 331

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTI 913
           G S +LDDFG+  S  S L     + +K + SL    +  +   ++R I+  AK ++   
Sbjct: 332 GFSCSLDDFGSGYSSFSVLTNTQLEALKIDRSLFRNENDPRERVLIRHILESAKELKLKT 391

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKE 955
           +A+ +     ++ L  +GCDY+Q      P+       + LK 
Sbjct: 392 VAEGVETRGYVEYLKSLGCDYVQGYVFYRPMPVEEFEERFLKN 434


>gi|149188681|ref|ZP_01866973.1| hypothetical protein VSAK1_16382 [Vibrio shilonii AK1]
 gi|148837591|gb|EDL54536.1| hypothetical protein VSAK1_16382 [Vibrio shilonii AK1]
          Length = 804

 Score =  312 bits (799), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 186/443 (41%), Gaps = 23/443 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LT + NR+SF+  +   +   +T           DI  +++IND+ G  +
Sbjct: 348 KVKFEAEFDGLTRLANRRSFIHFVEQRIASYSTRTTYIVA---WDITDFRRINDLHGAKI 404

Query: 588 GDDVLVSLTRRI----------GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            D VL +L R I                   + R   N F +++   N+  ++    +  
Sbjct: 405 ADQVLKNLAREIEVFVGHYQEDRGTATSDYSVCRYGSNTFCVLI-DANDENQVKSQIVNS 463

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN-AELAMYHAKHRGGNHVESFR 696
            K++     L    I +  ++  A +       + + +   E+A+  AK           
Sbjct: 464 EKTLKRAGLLDALPINLDLAM--AIFPLCSKDQANLWQKGLEVALNKAKQIKNQRSLVLF 521

Query: 697 VSSFRSDRVMI---KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 D   I   +  L    +     L Y P+I     EI  LE L++    +   I 
Sbjct: 522 DDQLLEDLSRIDDIERVLLKCTQTHGFELRYMPLIDSKTMEIASLEVLVRCPVLQAKGIG 581

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +AE+  +I  I+ +++E   +D+             + INI++ +L +NE  E 
Sbjct: 582 PDEFIPVAEKANIIGLIDSWVIENSLKDLQKMETDCGYTG-SLSINISALELYNNEFIEH 640

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           + +L S+      ++ L  +E+  + + + +  ++  LR++G  ++LDDFGT  + ++ L
Sbjct: 641 ICSLCSRYGVKHHKVTLEVTETSYVRSTQDTVAIISGLRELGFKVSLDDFGTGYASINQL 700

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            + P D +K + S +   +    +  +L SII +  N    ++ + +        LT +G
Sbjct: 701 LHYPVDELKIDKSFVDRISGEVNQERMLNSIIALGHNCHAKVVGEGVENANQYHYLTEIG 760

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
           CDY+Q    + PLG++   +  K
Sbjct: 761 CDYLQGYFFSKPLGYSEFCEFYK 783


>gi|300310696|ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspirillum seropedicae SmR1]
 gi|300073481|gb|ADJ62880.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 606

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 192/444 (43%), Gaps = 22/444 (4%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL-----RPTVMVIDIDKYKKIND 581
           + +   ++ D+LT +PNR   +  +  +   +     L     R   + +D+  +  + D
Sbjct: 172 DMLRMGSYVDSLTSLPNRSRLVADVQLMQAHATGLAGLDELPRRLAAVAVDVCDHTYLTD 231

Query: 582 ---VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
               LG    +  L+    R+ + L     L R+    F  +    +   +  D A  +R
Sbjct: 232 MVKALGWDYVEGFLIQAKERLCQALGEMA-LYRIGATSFAYL----DRCDRWQDQADRIR 286

Query: 639 KSIAMPINLLEREITVTASIGFAS---WTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           ++ A  +        +  S+G         +      +L  A++A   A        E  
Sbjct: 287 QAFAATVEHQGIPHHLEVSVGIVPLSQCPDAAELVPSLLTAADVA--RADGHLQCQYEQP 344

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                +    ++       +   +L+L + P + L      G+EAL++W HP  G IS +
Sbjct: 345 LGQMQKHSFELLSSIPAALLSTDQLWLEFQPKVSLSTGRCAGVEALLRWRHPIHGVISPA 404

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +AE+  +I+ + L++L+R      +W  +     I + IN++++D  +++L + + 
Sbjct: 405 LFIPLAEKTALIRQVTLWVLQRGIEQATAWARRG--VAIPVAINVSARDFDNDDLLQLLG 462

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+ +       I++ F+ES +  NPE+    +  ++++G+ + +DDFG   S LSYL +
Sbjct: 463 RLLEQHRIPAGLIEIEFTESAMSRNPEKLYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKH 522

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           IP D +K + S +           I+ S+I + + +   ++A+ +  E   + L  +GCD
Sbjct: 523 IPADYLKLDQSFILRMESDYSDQQIVPSMIHLGQRLGFAVVAEGVENEKTRRILQHLGCD 582

Query: 934 YIQDSHVASPLGFNSILKLLKERF 957
           + Q   +A P+        +  R 
Sbjct: 583 FGQGFGIARPMNAADCWDWIGARQ 606


>gi|302382158|ref|YP_003817981.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192786|gb|ADL00358.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 768

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 192/443 (43%), Gaps = 22/443 (4%)

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
            +A DI ++      +   A  +  TG+PNR     ++           +    V+V+ I
Sbjct: 334 AMAGDIRDR---EARLTHMALHEQETGLPNRLWLEQQVA---------VHTDGFVVVLGI 381

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++  + + +G      +L +L  RI E       +AR+S    G++L + + + +    
Sbjct: 382 DRFPIVRNAIGYDAMGQLLSALATRITETA-GGVKVARVSAGVVGMVLTAAD-AAEALAL 439

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  +      P+ L+   +  T   G AS          ++  A +A+  A+        
Sbjct: 440 AERLCAVADRPVKLIGATVDATLRAGVASAVDVTGGVDSLIDRAAIALDQARDGHRKAAR 499

Query: 694 SFRVSS-FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +       + +  DL  A+E+ ++++ Y P   L    I G+E L++W+HP+ G +
Sbjct: 500 FDATAYGDPVGNLSLISDLMGALESDQVWMAYQPKFDLRANAITGVEGLMRWNHPRRGFV 559

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ +AEE   I+ +  + L R   D  +     +   + + +NI+ + L D    +
Sbjct: 560 SPDLFITMAEETGQIRELTEWGLRRAIADQKTLAAAGH--ALTMSVNISGRLLTDESFAD 617

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
              A +++       +    +E+ V+ NP  +  ++ R    GI +++DD+G+  S LSY
Sbjct: 618 HALAEVARAGAD---MIFEITETAVIDNPAMALGIVDRFSAAGIRVSIDDYGSGLSSLSY 674

Query: 873 LGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  I  D +K + + +    E  +   +++S I +A ++   + A+ +     +  L  M
Sbjct: 675 LKQIRADELKIDKAFILTLDESARDALLVKSTIDLAHSLGLKVTAEGVETATALALLRGM 734

Query: 931 GCDYIQDSHVASPLGFNSILKLL 953
           GCD  Q   +A  L    +++ L
Sbjct: 735 GCDTAQGYFIARALPMAGLIERL 757


>gi|310826986|ref|YP_003959343.1| putative signaling protein [Eubacterium limosum KIST612]
 gi|308738720|gb|ADO36380.1| putative signaling protein [Eubacterium limosum KIST612]
          Length = 438

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 191/413 (46%), Gaps = 11/413 (2%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F+  L  IL    T+      +  +DI  +K +N++ G+  G  +L  +  +  ++L  
Sbjct: 29  LFIRHLGEILKEKRTE----AVLTAMDIHNFKLVNEIWGMRNGSRLLSIIVDQSLKVLGR 84

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            + ++R   +RF ++++   N++K        ++  A  +  +    ++  S+G   +  
Sbjct: 85  GESISRFFKDRFYLLMLGPVNAIK-ERLESMRQQIEAEFVRCIGYPYSLVVSLGLCEYNE 143

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLV 723
              +  + L  A  A+  A+   G+    +  +  ++ +    I++ +   +EN+E  + 
Sbjct: 144 DMESGDDWLIRANYALESAERPVGDGFAVYDNAMRKNLQEVRKIEKRMQFGIENNEFRIY 203

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISS-SEFMLIAEELCMIKAINLFMLERIARDI 782
             P   L    + G EAL++W +P+ G IS   +F+ + E+   I+ ++ +M+E+  R +
Sbjct: 204 LQPQFELATGRLSGAEALVRWINPEAGPISCPDQFIPLFEKNGFIRKLDFYMMEQACRVL 263

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+ QA   P+ I +NI+ + + +  L + +  +       P  I++  +E+  +   E
Sbjct: 264 SVWKKQAL-EPVPIAVNISRRHIGEPGLADRLLEICKVNSVPPEYIEIELTETFELSENE 322

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                L  L+K G SL LDDFG + + +S L    FD +KF+ S + G    E+   +L 
Sbjct: 323 TLMKALSALKKAGFSLALDDFGKENTSISLLREACFDVIKFDRSFLAGCIEDERARNLLD 382

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           S++ M KN+      + I    +   L +  CD +Q  + A P+  + +   L
Sbjct: 383 SMLKMVKNLGIKTHVEGIECREEEALLKKYQCDRVQGFYYAKPMPADMLTNYL 435


>gi|205357090|ref|ZP_02344827.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324013|gb|EDZ11852.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 998

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 ---FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 LHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|197250342|ref|YP_002147083.1| PAS domain-containing protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214045|gb|ACH51442.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 998

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A+++    +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLGIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNQPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|225025932|ref|ZP_03715124.1| hypothetical protein EUBHAL_00168 [Eubacterium hallii DSM 3353]
 gi|224956718|gb|EEG37927.1| hypothetical protein EUBHAL_00168 [Eubacterium hallii DSM 3353]
          Length = 550

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 162/397 (40%), Gaps = 13/397 (3%)

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISE 624
             +  IDI+ ++  N + G + GD+V+  +   + +     D + A L G+ F  +L   
Sbjct: 16  YCIAAIDIEHFRLFNKLYGRSSGDEVIRYICACLKQSTMENDGIDAYLGGDNFVALLPDS 75

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           +          ++R+ I   +             G  +   + I    M   A LA  HA
Sbjct: 76  DE------LLCSIREKIIEKLGKWNNTSVFFPLFGVYTIEDTSIQPELMYDRAMLARSHA 129

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           +     H+  + +           +  ++   +EN E      P   +M  +IVG EAL+
Sbjct: 130 EEDYKWHICRYTLEMESCLEEEVYLLAEIEKGLENEEFTFFVQPQCNIMTGQIVGAEALV 189

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W       +   EF+ + E+  MI  ++ ++ E++ + +  W D     P+ I IN++ 
Sbjct: 190 RWQKEDGEFLLPGEFIPVLEKNKMIDRLDRYIWEKVCQWLRHWID-TGHSPVPISINVSR 248

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            D+    +   +  L+ K       IK+  +ES    N  R    +  LR  G+ + +DD
Sbjct: 249 IDIFSMNVPAYLFDLMEKYQIPKHLIKVEITESAYTENNNRIASAVNTLRSGGLVVMMDD 308

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMT---GSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           FG   S L+ L  IP D +K +   +       +K   IL +I+ MA  +   I+ + + 
Sbjct: 309 FGCGYSSLNMLENIPVDVLKLDMRFLRFEEAERKKSAHILEAIVNMASMLHLPIVVEGVE 368

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E   K +  +G  Y Q  +   PL      +LL + 
Sbjct: 369 DESQEKFVQGLGYRYTQGFYYYKPLPIPKFEELLSDH 405


>gi|296450448|ref|ZP_06892204.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296879428|ref|ZP_06903422.1| probable signaling protein [Clostridium difficile NAP07]
 gi|296260709|gb|EFH07548.1| probable signaling protein [Clostridium difficile NAP08]
 gi|296429574|gb|EFH15427.1| probable signaling protein [Clostridium difficile NAP07]
          Length = 606

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 190/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VLV
Sbjct: 179 YTDNLTKIKNQVAFENRAIEILSHAY---NKEYVLLNIDIDNFKYINDTHGYEYGDKVLV 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+     +   + + +  +  +I   +N+   + T
Sbjct: 236 IVANVLAKTFNTKETCARVGSDNFVILAKYRESL--LYEISKTLTDAIISELNMNVTQ-T 292

Query: 654 VTASIGFASWTSSKIT---SSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG       K      + ++  A +A   +K RG +    +  +          I 
Sbjct: 293 ISFCIGAYLVEIEKSNYKYINSIMDKANIAHKVSKMRGISSTVWYNENLLKQLQMENSIY 352

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E  +   P  ++    +V  EAL++W  P+ G +S  +F+ + E+   I 
Sbjct: 353 NHMYKALENEEFQMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDQFIPLFEKSGFII 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    I     + N     I +N +   +  N+  +     + +       I
Sbjct: 413 ELDFYMLKKACSFIKKTFMKKNKYTYPIAVNFSRVTIYQNDFYQRFLDTVREYEIPFKYI 472

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      E    +L +L K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 473 EIEVTESAFNEISEPVISILDKLEKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 532

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +  K  +I++ II M+ +I+ +I+ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 533 KEKFNRAKVYSIIKCIIEMSHSIDMSIVCEGIETKKDLEFLKTVKCDLGQGFYFSKPIEE 592

Query: 947 NSI 949
              
Sbjct: 593 KEF 595


>gi|152990878|ref|YP_001356600.1| hypothetical protein NIS_1134 [Nitratiruptor sp. SB155-2]
 gi|151422739|dbj|BAF70243.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 684

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 197/448 (43%), Gaps = 37/448 (8%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L  I +   I++++K  + +   A  D +T +PNR +    L ++             ++
Sbjct: 256 LFTILVYYFISKEQKIEKELEYMASHDFVTKLPNRYALFQLLQSL--------QPPYYIV 307

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             +ID +  +ND  G+  GD+VL  L     +          +S + F +I+    ++  
Sbjct: 308 KFNIDNFSYVNDDFGVQAGDEVLKLLATIFKKNRCK---AFHVSSDEFVVIVEDV-DTRL 363

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +  F   +                +T S G         T   +    + A++ AK RGG
Sbjct: 364 VEIFFNKISHEFKH-----SSPFAITVSAGAYLVHEKIETFK-INAFLQAALFSAKKRGG 417

Query: 690 ------NHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                 N  + +     +  +  I   + +   ++ + L LV+ PI+ +   +IV  EAL
Sbjct: 418 DRLIVFNDGDPYIKEYQQFTQRAIAKRQQILQILQENRLRLVFQPIMDIRTHQIVKYEAL 477

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++ +  ++ NIS  EF+  AE   +I  I  +++++  R+I+       +  I + IN++
Sbjct: 478 LRVEGDEFKNIS--EFIEYAERFNLISEITQYVIDKSFREIM-------VHGIHLNINLS 528

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             DL+D  L + ++   ++      ++    +E+ V+ + E+    L +LR  G S+ +D
Sbjct: 529 GIDLMDEHLEKYIEQKRNQYHIDTKKVTFEVTETAVVEDMEKGTRFLSKLRSEGYSVAID 588

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  + L ++  +P D VK +GS +    +       +++++ + K++   ++A+ + 
Sbjct: 589 DFGTGYTSLRFIREMPADFVKIDGSFIKNIHKDEKLQEFVQNLVIILKSMHKKVVAEYVE 648

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFN 947
            E     L ++G DY Q  ++  P    
Sbjct: 649 NEEIFTILEKIGVDYAQGFYIGKPKSLE 676


>gi|213621669|ref|ZP_03374452.1| hypothetical protein SentesTyp_30747 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 587

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 206/565 (36%), Gaps = 16/565 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             ++ +F + ER  + +   G+ V   D+  +     P    + G       G     + 
Sbjct: 24  QANEALFQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVL 83

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I   ++      +       R  ++ E  +   +   + +   I P+S  +GD +  + 
Sbjct: 84  RITSGNKGPLLEDIYRA-NRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVL 142

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  D+TE +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D
Sbjct: 143 VIQDVTESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLD 201

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+        
Sbjct: 202 RFKAVNDSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIAT 261

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +            R   + AS G           +E++  A++A Y AK+ G   +  
Sbjct: 262 RLINAVNEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTV 321

Query: 695 FRVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +            + ++E   +   N  L L  +       E        ++    +   
Sbjct: 322 YEPQHALTSSKGMMPLEEQWHMIKNNLLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEV 381

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +    F     +  +  A++  +     R   +         + + + +++  L    L 
Sbjct: 382 MEERAFRAGLADSALHHALDRRVFHEFFRHAATAVASKG---LSVALPLSAAGLYSATLI 438

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +   +  +   P  + L     V++   + +   L +LR+ G  + L   G     L 
Sbjct: 439 DELLEQLEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQ 495

Query: 872 YLGYIPF---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
               +P    D +  +  L+    E      +   I   A++++   +A  +     +  
Sbjct: 496 LFNLLPPHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDT 555

Query: 927 LTRMGCDYIQDSHVASPLGFNSILK 951
           L+R+G D I    +A     + +L 
Sbjct: 556 LSRIGVDLIYGDTIAEAQPLDLLLN 580


>gi|126727761|ref|ZP_01743592.1| hypothetical protein RB2150_00400 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703017|gb|EBA02119.1| hypothetical protein RB2150_00400 [Rhodobacterales bacterium
           HTCC2150]
          Length = 674

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 99/428 (23%), Positives = 195/428 (45%), Gaps = 12/428 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           ++   +D++  ++  + +   A  D+LTG+ NR          L  SATDD+   ++ ++
Sbjct: 238 WLLTESDVSMAEEVKDELQYLANHDSLTGLKNRNFLKKHAPEFL-QSATDDHTYVSMSLV 296

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND LG   GD +L    RR+ ++     I+ARL G+ F +++ ++     I 
Sbjct: 297 DLDRFKYVNDTLGHDAGDQLLAEFARRLQKIAPKGSIVARLGGDEFCLLIRNDVLPKNI- 355

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                    +  P ++    + + AS+GF+  ++   +   + + A+LA+Y AK  G N 
Sbjct: 356 --CEMFLDQVNKPFSINGHNVQMNASLGFSQTSAETQSYDVLFQQADLALYAAKREGNNT 413

Query: 692 VESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
            ++F             + + +   +E   L + + P      E+I+G E       P  
Sbjct: 414 CKAFNPEMSEESQRFHFVDDKIKKCLETKSLEVNFCPQFCFETEKIIGAETSYWVRLPNG 473

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            N+ + E   +AE       I  ++L++     + +          I + ++   L D+ 
Sbjct: 474 KNLPTYELNSVAEATGANLQIEKWVLQKAMDVALDFAKVGRHQS--ISVKVSELLLQDDH 531

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +Q  +  + ++P  +KL  +E +++ N  R +  + ++ ++G  L + DFGT  S 
Sbjct: 532 FIPLLQQYLDNSKFTPKSMKLEITEMLLLTNDLRLQNTITKITQMGYQLVIRDFGTAYSY 591

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIAILR-SIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +S L   P   +K + SL+T     ++ IL  +II MAK +   + A  +  +   K L 
Sbjct: 592 ISCLQNYPISHLKLDQSLVTD---GKLKILALTIISMAKALGIHVTADGVENQPQKKWLE 648

Query: 929 RMGCDYIQ 936
             GCD  Q
Sbjct: 649 SAGCDEYQ 656


>gi|161613193|ref|YP_001587158.1| hypothetical protein SPAB_00903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362557|gb|ABX66325.1| hypothetical protein SPAB_00903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 998

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 217/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  +     G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVIFSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A+++    +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLGIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|152992217|ref|YP_001357938.1| hypothetical protein SUN_0622 [Sulfurovum sp. NBC37-1]
 gi|151424078|dbj|BAF71581.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 430

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 96/432 (22%), Positives = 185/432 (42%), Gaps = 9/432 (2%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           +  D LT +P     ++ L   L    +++ L   ++ ++I+   + N++ G      +L
Sbjct: 4   SVTDALTELPGYNVLVEHLGKKL---HSENFLPTGILYLEIEDLVRFNEIFGYDTDKQIL 60

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           ++L++ I  L      + RL    F I+      S  +   A  +   +  PI+  +   
Sbjct: 61  LNLSQNISNLFDDELFI-RLGTYDFVIMKEGVEESSTLMVIAEKIINLLREPISFGDNLF 119

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG--GNHVESFRVSSFRSDRVMIKED 710
            +TA+IG +  +  +     ++K AE AM  +K  G     V S  V         +  D
Sbjct: 120 YITAAIGISISSKEERDPLMLIKKAEHAMKESKREGINRISVSSDTVDFSYEHEFRLLHD 179

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN E+Y  Y            G+E L +W+HP+ GNI    F+ +AE+  MI  +
Sbjct: 180 LPYALENGEIYFAYQAQYSYEKSAFTGVEMLARWEHPELGNIPPRIFIPLAEKSGMITPL 239

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
               L   A       +   +    I +N+  + L++    + ++ L+         +  
Sbjct: 240 MTRTLIEAASMFRRLEEHNIIE-FSIAVNLPFQVLMEESFLDTVRFLLDAYALKGKALTF 298

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E  +  + E     L   + +G SL +DD+GT  + L+YL + P D +K + S +  
Sbjct: 299 EIMEDTIPDHLESFSARLNEAKSLGFSLAIDDYGTGHTSLTYLLHFPIDYLKIDRSFVHN 358

Query: 891 ST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   + +SII MAK +E  +IA+ +  + +   L +     +Q    + P+  + 
Sbjct: 359 IHLSRRNYLLFKSIIDMAKALELKVIAEGVETKEEDNVLRQFKEITVQGYLYSKPVKEDK 418

Query: 949 ILKLLKERFPLV 960
           ++ L+++  P V
Sbjct: 419 LIDLIEQTIPTV 430


>gi|302519346|ref|ZP_07271688.1| sensory box/GGDEF family protein [Streptomyces sp. SPB78]
 gi|302428241|gb|EFL00057.1| sensory box/GGDEF family protein [Streptomyces sp. SPB78]
          Length = 535

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 11/366 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTIL-DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           D LT +  R  FLDRL   L +        R  + V+ +D ++ +N   G  VGD +L +
Sbjct: 6   DPLTRLAGRAHFLDRLADTLQEHGLRGGRGRVGLCVLGLDGFRHVNTAHGHLVGDHLLRA 65

Query: 595 LTR-------RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           +          +        +LARL G+ F +++       ++ + A  + + +  P ++
Sbjct: 66  VAARLARLAPLLASARGEAPVLARLGGDEFALLVGETTGPGQLTELAATVLRELREPYDI 125

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
             R + V+AS G A   + + + +E+L+    A+  AK  G      F  +         
Sbjct: 126 AGRRLAVSASAGVAELRARETSPAELLRAVTTALGWAKAEGRGRWALFDSARCEDGAHQD 185

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +   L  AV + E  L Y P++ L D  + G+EAL++W HP++G ++ + F+ +AE   
Sbjct: 186 LLATALRPAVRDGEFELEYQPLVALADGTLHGVEALVRWRHPRFGRLAPNRFIDVAERDG 245

Query: 766 MIKAINLFMLERIARDIISWR-DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            I  +  ++L        SW+  +    P ++ +N+  + L D+++   +  ++++T   
Sbjct: 246 SIVELGRWVLRTACAQARSWQLARPGARPPYVSVNVTVRQLWDSDVVADVADVLAETRLP 305

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS ++L  +ES V+G   R    L  L  +G+ + +DDFGT  S LSYL  +P   +K +
Sbjct: 306 PSLLQLELTESEVVGQTGRPLRALQELSDMGVRIAIDDFGTGYSNLSYLSRLPVSVLKLD 365

Query: 885 GSLMTG 890
           GS + G
Sbjct: 366 GSFVRG 371



 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                I+ +++ +A  +  T+ A+ +      + L  MGCD  Q    + P+    I  L
Sbjct: 460 PADEVIVEALVGLAHRLGLTVTAECVETRGQAERLRAMGCDMGQGYLYSRPVPPERIGLL 519

Query: 953 LK 954
           L+
Sbjct: 520 LE 521


>gi|310826233|ref|YP_003958590.1| hypothetical protein ELI_0611 [Eubacterium limosum KIST612]
 gi|308737967|gb|ADO35627.1| hypothetical protein ELI_0611 [Eubacterium limosum KIST612]
          Length = 712

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 187/473 (39%), Gaps = 43/473 (9%)

Query: 506 NGDILRYIGI------ANDITEQK-------------KSLEGILCNAFQDNLTGIPNRQS 546
           +G I  ++G+        D T  +             + L  +   +++D LTG+ NR  
Sbjct: 251 DGRITGFLGVDNPSANTRDWTLLRSVSTFVIDELKKRRLLLDLEYASYRDLLTGLSNRNY 310

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           +   L  +             ++ IDI+  K  ND  G   GD ++      +       
Sbjct: 311 YQKFLDGL----KLSPPDSLGIVYIDINGLKAANDGYGHQYGDYIITQSAMILKRFFP-- 364

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D   R+ G+ F  + I    +      A              +++  V  SIG + W   
Sbjct: 365 DCAFRIGGDEFIALSIDCAQASFEQKVADVKAAF--------DQDKNVDVSIG-SLWKQG 415

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP 726
           +      +  A+  MY  K +  + +      S       + + +     N +  +VY P
Sbjct: 416 EYNIENEIILADELMYSEKQKYYDTILREGRGSRTGQAAHLLQSIQ----NHQFTVVYQP 471

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + L   +IVG+EALI+   P    I+   F+   E   +I+ I+L++ E +   +  W 
Sbjct: 472 QVELATGKIVGVEALIRKKGPGGKLITPDHFIPRYEREGIIRHIDLYVFEVLCAQLKKWH 531

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D+ +   +   +N +   L++  + + +Q +  +   +P  + +  +ESV          
Sbjct: 532 DRGDR--LRGSVNFSRVTLMETNIVKTLQNVCGQYGVAPEDVTVEITESVSKVENAALNA 589

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIP 904
           L+      G S++LDDFGT  S LS LG + F  +K + S++      +K+ A+++++I 
Sbjct: 590 LINTFHAAGFSISLDDFGTAYSNLSILGELDFTELKIDKSMLQDLTGNKKKQALVKNVIL 649

Query: 905 MAKNIE-TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + K+      +A+ I  E     L +  C   Q  + + PL         + +
Sbjct: 650 ICKDFGNIISLAEGIESEEQYALLLKYHCLLGQGYYFSKPLSEKVFNTYYRTK 702


>gi|295094689|emb|CBK83780.1| FOG: EAL domain [Coprococcus sp. ART55/1]
          Length = 609

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 167/433 (38%), Gaps = 20/433 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+++  TG  N     ++L             +      DI  ++ IN+V+G  V  D+ 
Sbjct: 181 AYREPATGHYNWTWLKEKLEQ----CEYIGLDQFIFARFDIKGFRLINNVMGREVAKDLF 236

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + +        A+   + F +I+        +        +   +P     R+ 
Sbjct: 237 RYICDAMTKQDWILYS-AKCESDDFAMIIKYMPEDEIMNRLYTFFEEIGQLP---SNRKY 292

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-----VESFRVSSFRSDRVMI 707
            +  S G   +       +  ++  ++A          +     + +  +          
Sbjct: 293 KIFYSCGIVFYDE-FEKINMSMRIEDMAQMAHLQCIKTNVNEIKIYTSEMKKEYIMAQQY 351

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           K +L  A+EN +L +   P     ++ + G EALI+W +     +S   F+   E    I
Sbjct: 352 KLELPDAIENEDLMVYLQPKYNPQNDTLTGAEALIRWFYKGGDILSPKYFVPQFETDGTI 411

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ ++L ++ +    W  +   P   I  N++   +   +L   +  ++ +     S 
Sbjct: 412 DIIDRYVLRQVCKKFKEW-KELGYPLYPISCNLSRHQISRPDLIYILCDIVDEYGVDHSL 470

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I    +ES    + +    +L  L+  G  +++DDFGT  S ++ L  +P D +K + S 
Sbjct: 471 IDFEITESADFADVQYLIKVLKDLKAEGFKISMDDFGTGYSSMALLKDMPLDIIKIDKSF 530

Query: 888 MTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + G        K + + + I+ M++++    +A+ +      + L   GC YIQ  + + 
Sbjct: 531 IDGIATGEPNNKDMLMTQDILTMSRHLGIRSLAEGVETFEQKEYLREWGCHYIQGYYYSK 590

Query: 943 PLGFNSILKLLKE 955
           P+       LLK+
Sbjct: 591 PIPITGYEYLLKK 603


>gi|152981125|ref|YP_001352453.1| sensory box protein [Janthinobacterium sp. Marseille]
 gi|151281202|gb|ABR89612.1| sensory box protein [Janthinobacterium sp. Marseille]
          Length = 459

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 138/276 (50%), Gaps = 3/276 (1%)

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           G      + + +  S+R +++ DL  A+++++L L Y P     D  IVG EAL++W HP
Sbjct: 169 GLLWTLLWVMQADLSERNVMEADLRKALQDNQLMLYYQPQT-GNDGRIVGAEALLRWRHP 227

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +S ++F+ +AE+  +I  I  ++L      +ISW        + + IN+++     
Sbjct: 228 VKGMVSPADFIPLAEQTGLILPIGHWVLGMACAQLISWSKHPATAQLSLAINVSALQFKQ 287

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +    + +++ ++   P  ++L  +ES+++ +       +  L++ G+ L+LDDFGT  
Sbjct: 288 PDFVSQVVSVLDRSGADPHLLELELTESMLVNDVNDIIAKMNALKEKGLRLSLDDFGTGY 347

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P D +K + S +         + I+R+++ +A+ +   +IA+ +  +   +
Sbjct: 348 SSLSYLKKLPLDQLKIDQSFVRDMLFDSNDVTIVRTVVELARGMGLHVIAEGVETQEQRQ 407

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
            L  +GC   Q   ++ P+       ++      +K
Sbjct: 408 FLAELGCLSFQGYLLSRPVPNAEFEAVVLAHNTALK 443


>gi|238765455|ref|ZP_04626375.1| phosphodiesterase [Yersinia kristensenii ATCC 33638]
 gi|238696312|gb|EEP89109.1| phosphodiesterase [Yersinia kristensenii ATCC 33638]
          Length = 306

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 143/303 (47%), Gaps = 5/303 (1%)

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAV 715
           +G + +  +      ++ +A +AM+ AK+ G  H   F V     ++    +++ L  A 
Sbjct: 1   MGISLYPENGTEIDTLMNHANIAMHKAKNMGYGHFNFFSVEMNNLNQQRQDMEDALRHAF 60

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
               L L Y P + L D  + G+EAL +W+HP  GNI    F+ IAEE  +I  + L+ +
Sbjct: 61  HIGSLELFYQPQVMLKDGHLYGVEALSRWNHPVLGNIPPQHFIPIAEESGLINELALWAI 120

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   + +  WR +    P  + +N++  +  +  L + +  ++ +    P  + L  +E 
Sbjct: 121 DTACQQLADWRLRGIDIP-SVSVNLSPTNFHNPGLPDMILHILHRYHLPPQDLTLEITED 179

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
           +++ +       + ++ ++G+ L++DDFGT  S LSYL  +  D +K + S +       
Sbjct: 180 ILIESNPAIFTTIEKIHRLGVRLSMDDFGTGYSSLSYLRRLDLDEIKLDKSFVHDLEHDE 239

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +  ++I + ++++ ++I + +  E     L+R G    Q    +  L    + + L
Sbjct: 240 TSRTLSEAVIRIGESLQLSVIVEGVENEAQRTLLSRQGYLIGQGFLFSEALPAIKLEEWL 299

Query: 954 KER 956
           + R
Sbjct: 300 ERR 302


>gi|78357600|ref|YP_389049.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
            subsp. desulfuricans str. G20]
 gi|78220005|gb|ABB39354.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
            PAS/PAC sensor(s) [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
          Length = 1035

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/573 (21%), Positives = 231/573 (40%), Gaps = 23/573 (4%)

Query: 401  FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             ++ +R S A  G    V   D     +        + G A  S+   I     +IH  D
Sbjct: 475  RNEAQRLSAAFAGLPAPVTIMDSGLSIIQANKAFWRMTG-AGHSVQNEITPLSRFIHPED 533

Query: 461  RDNFRTILDSFVGYRRGRL-----QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
                   LD       G       + + R+  A +  H++++R+    ++    + Y   
Sbjct: 534  LP-LLAGLDRSASGVSGVSGDAVAELKLRMVDASDTVHFVLMRMTA--DAAPRTIVY--- 587

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR-LTTILDLSATDDNLRPTVMVIDID 574
              D+T ++   E  +  A+ D+LTG+PNRQ      L  +   +A        + +I+I 
Sbjct: 588  -EDLTARQHYEEERMRQAYTDHLTGLPNRQYLYSAGLEKMAGEAA--PEQSAGLCLINIQ 644

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
                 N+  G+A GD VL+   +R+ +       L R  G+ F I++ +   +  +   A
Sbjct: 645  GLDVANNAAGLAAGDAVLLQAAQRMDKARAADHTLIRYGGDDFLIVMAAPCTADAMKTLA 704

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHV 692
              + ++   P      E T+  S GFA +     T  E+++ A++AM H++ +  G   +
Sbjct: 705  EKLHEAFETPFMTGGTEYTLQLSFGFALYPEHGDTLEELIRRADMAMCHSRFQADGQFCL 764

Query: 693  ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                + + R         L  A+EN E    Y P++ L    I G EAL +         
Sbjct: 765  YHKSLDTLRQYDAGKTGTLRTALENGEFLARYQPVVDLRSGTITGAEALARQVLQNGHES 824

Query: 753  SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
              + F   AE   +I  I+L +L++  RD   W       P  I +NI+      ++   
Sbjct: 825  PPAGFKRSAERSGIIWNIDLTILQQACRDAARWHTLG--MPAAIAVNISPAFFHRHDFLA 882

Query: 813  GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
             ++A +  +      + L   E+V + +  ++   L  L+ +G+   L +FGT  S  ++
Sbjct: 883  HVEAALKDSGLPAGLLTLDMEEAVYLHDYRKALGTLDSLKHMGVRPALGNFGTGYSATAH 942

Query: 873  LGYIPFDTVKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
            L  + F  +K + ++          A+LRS   +A +++   ++  +  E     L  +G
Sbjct: 943  LHDLGFAALKIDHTIASALPGAPAAALLRSAAGVAGSLDIPALSGGVETEFQRSFLLGLG 1002

Query: 932  CDYIQDSHVASPLGFNSILKLLKE--RFPLVKN 962
                Q    A PL    + KL  E  RF   ++
Sbjct: 1003 YAAGQGFLFAPPLPAAQMEKLFTEQPRFSAARS 1035



 Score = 42.2 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 54/195 (27%), Gaps = 13/195 (6%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
            A       FI L   + KR+ + +      G  V   +    + +  +      +    
Sbjct: 294 VALAAFMAGFILLDRRVLKRISSLVSAVRASGSGVHAAVRPSGSELDELEMLLSAATDTA 353

Query: 402 SDGER-QSLAVLGSGDIVWDWDIVRD-RVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
              ER  +  +      +   D      V+       +LG     + G   + +  +  +
Sbjct: 354 LRNERDTARIMDSLPVGLMVIDPKTRAIVSLNRAAQEMLGFTEDGLLGRDCSSVVCLATD 413

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +           +     +      +R AD      +     +  ++G    ++    DI
Sbjct: 414 EP-------CPMLDTANPQHHVIRTMRRADRTEITALKSTAHI--NDGRNDFFMEAFMDI 464

Query: 520 T--EQKKSLEGILCN 532
           T  E+K         
Sbjct: 465 TDLERKWLSHRNEAQ 479


>gi|24375806|ref|NP_719849.1| GGDEF domain-containing protein [Shewanella oneidensis MR-1]
 gi|24350756|gb|AAN57293.1|AE015865_7 GGDEF domain protein [Shewanella oneidensis MR-1]
          Length = 876

 Score =  311 bits (797), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 105/438 (23%), Positives = 198/438 (45%), Gaps = 4/438 (0%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL   +         +  ++ ID+D++K 
Sbjct: 438 IRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNHAIKHVRRHSLEQFALLFIDLDRFKL 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L + N+     D A  + 
Sbjct: 498 INDTMGHLEGDRFLIETATRLRSCIRSNDTLARLGGDEFVILLDTINDMNDARDVAERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I+   +    E    ASIG     +   TS  ML+NA+ AMY AK  G      F  S
Sbjct: 558 RKISQSYHFGTIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDDS 617

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +     I  + D   A++  EL L + PI+ L   +   LE  + W+HP+WG+I    
Sbjct: 618 ASQQKMQDIAFENDFRQALQADELQLNFLPIVDLQTRQTRSLECRLSWEHPQWGSIPQEV 677

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
              +AE+  +   ++ + +  + +             + + + ++S+ L    +  G++ 
Sbjct: 678 LNKLAEQANLQVELDKYAIRLLDKCYHQLLISHGD-NLDLHLMLSSQHLKHKHVLRGLKT 736

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +T    S++ L F+E  ++   E        L K+G++L +  +G+  S L+ L ++
Sbjct: 737 TLKQTQLPLSQLWLFFNEKALVQETENHISGFELLNKLGVNLGISHYGSGHSPLNSLLFL 796

Query: 877 PFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P   +K + ++      E+ I ++ +    A  +E       +     I     +G  + 
Sbjct: 797 PLKGLKLDANITKQLQDEQHIKLMSAYQKAASTLELQTFVDGLQSPEQINIFHALGYRFG 856

Query: 936 QDSHVASPLGFNSILKLL 953
           Q   +ASP       +L+
Sbjct: 857 QGCALASPFALVETQQLV 874


>gi|261253276|ref|ZP_05945849.1| hypothetical protein VIA_003301 [Vibrio orientalis CIP 102891]
 gi|260936667|gb|EEX92656.1| hypothetical protein VIA_003301 [Vibrio orientalis CIP 102891]
          Length = 775

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 211/558 (37%), Gaps = 36/558 (6%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDN 463
           E            +   D +   +        + G AS  + G   +      H +    
Sbjct: 86  EVFYFLFENHHHGILVADELTKILVCNHHYEELTGYASNEITGLKTSIFNAEKHSD---A 142

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--- 520
           +   L   +  + G        R AD       + I+ + ++N     +IG++ D++   
Sbjct: 143 YYEHLWGQLKQQ-GHWSGTILTRRADGTVFPQDLTIQKIQSTNRAP-FFIGLSADLSGKL 200

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+   +E        D LT +PNR+ FL  LT   +       L    +   +D   ++ 
Sbjct: 201 ERIDDIESGGI----DLLTQLPNREGFLALLTQACNDIQKGQGLVVVALQPKLDSTAEVK 256

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE-NNSLKIADFAIAMRK 639
                      L      +            L  + F + L  E  ++  +         
Sbjct: 257 RQF-----ASYLKDNAHTL--------CCGYLGHDCFALCLPFEYQHNQHVVAQIGRAIT 303

Query: 640 SIAMPINLLEREITV---TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVES 694
            +       +  + +   +   G + + +   T S+++ +A  A+   H+ H    +   
Sbjct: 304 KLFHSFKHAQAPVAMALKSGITGVSVFQADATTPSQLVSHAYQAVLELHSGHERRVNFYD 363

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            ++      +  I+E +   +    + + + PI+ L  ++ V  EAL ++   +    S+
Sbjct: 364 RQIHQQIERKKRIEEHVIDTLSKGNIEVYFQPIVDLKMQQAVKFEALCRFPEHEEFVAST 423

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD-NELCEG 813
            E +   E+L  +  ++  +L    +     + +     + + +N + K   + +++ E 
Sbjct: 424 QEMIEAVEDLDKVVELDDLVLVNALKQFPDLQQRFGNH-VSLSVNRSLKTTTELSDILER 482

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              ++      P  I   F+ES    + E++R +L  LR  G+ + +DDFGT  +   YL
Sbjct: 483 AAKILDVQGTDPELITFEFTESAYFDSDEKNREILALLRGAGVKIAVDDFGTGSASFRYL 542

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               FDT+K + + +   T       I+++++ ++  ++  +IA+ +  E +++ +  +G
Sbjct: 543 KECYFDTLKIDRTFIQNITPDSRQYNIVKALVHLSAKLDLEVIAEGVETEQELEAMRSLG 602

Query: 932 CDYIQDSHVASPLGFNSI 949
            + IQ  + + PL    +
Sbjct: 603 VNLIQGYYFSKPLPLEQL 620


>gi|220905025|ref|YP_002480337.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
            subsp. desulfuricans str. ATCC 27774]
 gi|219869324|gb|ACL49659.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
            subsp. desulfuricans str. ATCC 27774]
          Length = 1032

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 173/436 (39%), Gaps = 23/436 (5%)

Query: 522  QKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            ++ + E +L   +F+D+LTG+ NR S+L      +  +    N       + I++ K+IN
Sbjct: 608  RRINYEKLLVKLSFEDSLTGLHNRNSYL----QGISGAKEVQNAGIA--YLSINEMKRIN 661

Query: 581  DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            +V G A GD +L      +           R+ G+ F ++  +        +  + + K 
Sbjct: 662  NVFGQAHGDRLLAECAHCLKNAF-PSGTAYRVGGDEFLVMCKNMPRKD--FEQCVRLLKV 718

Query: 641  IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV---ESFRV 697
                            +IG   W+ +      +   AE  MY  K          + +R 
Sbjct: 719  HCSTFQ------DCRVAIGH-QWSETAADMQNLAHAAEKRMYQDKKNHYRKNLPSDRYRH 771

Query: 698  SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             +     +     L  ++      +   P +   D  + G EAL+++          ++F
Sbjct: 772  YNDDVFCLTEPGMLEKSLREGAFTVYLQPKVSSADRRVSGCEALVRYLQKDGTVTPPAQF 831

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + + E+  +I  ++ ++ + +   I  W  +     I I +N +   L + +    +Q +
Sbjct: 832  LPVLEDTKLIGILDFYVFDIVCASIARWFAE-GRQAIPISVNFSRYTLAEQDFLTRLQTV 890

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +        + +  +ESV          L+  +R++G ++ +DDFG   + LS      
Sbjct: 891  FNGYGIDKKWVIVEVTESVKGVEGMNLLALIDSIRELGFAVAIDDFGVDFANLSLFSLAN 950

Query: 878  FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            FD +K + +L+      +K   ++ +++ M + +   ++A+ +  E     L + GC+ +
Sbjct: 951  FDELKVDKALVDSIVTNQKTQMVIEAVVDMCRRMNIRVVAEGVETEEQFAILRQKGCEQV 1010

Query: 936  QDSHVASPLGFNSILK 951
            Q    + PL   +  K
Sbjct: 1011 QGYLFSKPLPMTTFEK 1026



 Score =  144 bits (363), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 3/192 (1%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I E K+  + ++  A  D LTG  NR +F  +    L   +   N+  +V+ IDID +
Sbjct: 116 KNIQELKRYGDALVHMATTDKLTGASNRHAFFKK-GAALHEHSKKFNMPVSVLFIDIDHF 174

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K++ND+ G A GD VL  ++  I   L+  DI  R  G  F ++L    +S      A  
Sbjct: 175 KQVNDLYGHAFGDAVLERISGAIKRCLRGSDINCRYGGEEFVVLLAH-ADSDAAHLVAHR 233

Query: 637 MRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +   +         ++ ++ SIG +S   ++  +   ++++A+ AMY AK  G N V   
Sbjct: 234 IMNMVQCIRFQEYPDLRLSVSIGLSSMQPAAPRSLEHLIRSADSAMYQAKQDGRNRVVVE 293

Query: 696 RVSSFRSDRVMI 707
               +      I
Sbjct: 294 HPQPYTGPPREI 305


>gi|149375644|ref|ZP_01893413.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinobacter algicola DG893]
 gi|149360046|gb|EDM48501.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Marinobacter algicola DG893]
          Length = 766

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 95/431 (22%), Positives = 189/431 (43%), Gaps = 30/431 (6%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             L  ++ D LTG+PNR   L  L          ++    +++I++D++ +IN + G   
Sbjct: 349 RELQASYTDELTGLPNRVRLLRDLQ---------NHQAAALLIINLDRFNQINSLFGNVC 399

Query: 588 GDDVLVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GD VL+++  R+    +  +     + RL G+ F ++  +          A+ +R  +  
Sbjct: 400 GDHVLLAVATRLTAFSRDHNREVFRVYRLPGDEFAVLAPAMT-PEVAHQLAVQVRHLVTG 458

Query: 644 -PINLLEREITVTASIGFASW--TSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---V 697
             +   E+ +TV  SIG A       +  + +++  A++A+  A+  G +H+       V
Sbjct: 459 DRVYWQEQRLTVDVSIGIALRKNRKPEDAADQLVSQAKVAVLQARETGRHHLLYDPAVGV 518

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                + +     L  A+++  L   + PI       I   E L++   P    IS+  F
Sbjct: 519 EENYENNLYWANRLKEAIDHDRLVPWFQPIHDNQSGRISKYECLVRMVEPDGSVISAGRF 578

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           M IA +L + + I   M+E+         D+         IN++  D+ + E    + + 
Sbjct: 579 MDIANKLRLNRRITELMIEKCFACFTGRDDEF-------SINLSYGDITEPETVAQILSA 631

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I  +     R+     ES  + N +  R  + +++  G  + +DDFGT  S  S+L  + 
Sbjct: 632 IETSGI-GDRVIFEILESDGITNYDDIRAFIEQVKPYGCRIAIDDFGTGYSNFSHLLSLN 690

Query: 878 FDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +GSL+    E + A L    I+  A++++   +A+ ++ E     +  +G D+ 
Sbjct: 691 VDFIKIDGSLIRNLHEDQTAFLVTSGIVQFARSLDIQTVAEFVHNEPVQARVRELGIDFS 750

Query: 936 QDSHVASPLGF 946
           Q  +V+ P+  
Sbjct: 751 QGEYVSMPVPA 761


>gi|255656119|ref|ZP_05401528.1| putative signaling protein [Clostridium difficile QCD-23m63]
          Length = 606

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 189/423 (44%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT I N+ +F +R   IL  +    N    ++ IDID +K IND  G   GD VLV
Sbjct: 179 YTDNLTKIKNQVAFENRAIEILSHAY---NKEYVLLNIDIDNFKYINDTHGYEYGDKVLV 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +     +  AR+  + F I+     +   + + +  +  +I   +N+   + T
Sbjct: 236 IVANVLAKTFNTKETCARVGSDNFVILAKYRESL--LYEISKTLTDAIISELNMNVTQ-T 292

Query: 654 VTASIGFASWTSSKIT---SSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIK 708
           ++  IG       K      + ++  A +A   +K RG +    +  +          I 
Sbjct: 293 ISFCIGAYLVEIEKSNYKYINSIMDKANIAHKVSKMRGISSTVWYNENLLKQLQMENSIY 352

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E  +   P  ++    +V  EAL++W  P+ G +S  +F+ + E+   I 
Sbjct: 353 NHMYKALENEEFQMYLQPKFQISSLNVVSAEALVRWFSPELGFLSPDQFIPLFEKSGFII 412

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ +ML++    I     +       I +N +   +  N+  +     + +       I
Sbjct: 413 ELDFYMLKKACSFIKKTFMKKIKYTYPIAVNFSRVTIYQNDFYQRFLDTVREYEIPFKYI 472

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES      E    +L +L K+G  +++DDFG+  S LS L  +  + +K + SL+
Sbjct: 473 EIEVTESAFNEISEPVISILDKLEKLGFLISMDDFGSGYSSLSLLCSLSINGLKLDKSLL 532

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +  K  +I++ II M+ +I+ +I+ + I  + D++ L  + CD  Q  + + P+  
Sbjct: 533 KEKFNRAKVYSIIKCIIEMSHSIDMSIVCEGIETKKDLEFLKTVKCDLGQGFYFSKPIEE 592

Query: 947 NSI 949
              
Sbjct: 593 KEF 595


>gi|218280895|ref|ZP_03487513.1| hypothetical protein EUBIFOR_00071 [Eubacterium biforme DSM 3989]
 gi|218217782|gb|EEC91320.1| hypothetical protein EUBIFOR_00071 [Eubacterium biforme DSM 3989]
          Length = 721

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 189/439 (43%), Gaps = 13/439 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K+ E +   A+ D LTG  +   F       L       N   +++ +++ ++K +N++L
Sbjct: 290 KNNEEMEKLAYTDQLTGAVSFARFTQ-----LVRIYALKNNDYSLVSLNMRRFKFMNEIL 344

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    D+ L  +   I  +LK  +I+ R S + F ++L+      K+++   A+  SI  
Sbjct: 345 GRDKSDEFLCRIVTCIKPMLKKNEIICRDSADVFYMLLMD-TAENKVSNRIHAIFNSIRQ 403

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                  E      +        K +  +ML N   A+  +K     ++  F     +  
Sbjct: 404 NTKDFCYEYEFCCGVICNGARQEKYSFEQMLTNVMFALAQSKEMASENICFFDEEVHKKK 463

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                ++ ++  A++++   +V  P + L    +V  EAL++W       +  S F+ I 
Sbjct: 464 EFENFVESNMQQALDSNCFEMVLQPKVDLGSNLVVSAEALVRWKLEDGTYLPPSSFVGIF 523

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+      ++ +ML +  + I  W D     P+ I +N +            +++L+ + 
Sbjct: 524 EKNRFCSKLDFYMLRKAIQQIRKWIDMGIQ-PVNISVNQSKIVFYHENYISELKSLLKEY 582

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S S I L   ES V+ + +    +L  ++K+G S++LDDFG+  S L+ L  +  D +
Sbjct: 583 DVSASYITLEVLESTVIEDFKLFNQILLEVKKLGFSVSLDDFGSGYSSLNVLSKLTIDEL 642

Query: 882 KFNGSLMT-GSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
           K +   +   S  +      IL  II +AK     ++ + +    D + +  +G +  Q 
Sbjct: 643 KIDRIFLHIDSDLENKKTKWILEGIISIAKKSNIRVVVEGVESSKDDEFIRCLGANVGQG 702

Query: 938 SHVASPLGFNSILKLLKER 956
            + + PL  ++   L+ ++
Sbjct: 703 YYYSRPLSIDAFNDLIHKK 721


>gi|284048166|ref|YP_003398505.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidaminococcus fermentans DSM 20731]
 gi|283952387|gb|ADB47190.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Acidaminococcus fermentans DSM 20731]
          Length = 1451

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 188/445 (42%), Gaps = 25/445 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFL----DRLTTILDLSATDDNLRPTVMVIDIDK 575
           T   ++    L  A       +P+ ++F     ++L           +     +  +I  
Sbjct: 5   THTVRNESEPLHLA-------LPSMRAFYQSAREQLEQEWAAGQELKSCP---VFFNITN 54

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           ++  N   GI  GD  L  +   + +      +L  L  + F ++  + + + +I     
Sbjct: 55  FRLYNASCGIEEGDHCLQQIAEILRKNF-PGRLLTHLGADHFAVLAATSDVTERIESSCH 113

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN-AELAMYHAKHRGGNHVES 694
            +R  I  P       I + A I + +   S    +    N A LA          H   
Sbjct: 114 DLRSLITNP------NIELKAGIRYLNKPLSNEALTLAFDNDAALACKSISKDATRHYAV 167

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           +     R  ++   ++E+L  A+ +  + +   PI+R ++ ++   EAL +WD P++G +
Sbjct: 168 YTKEMGRIHQLQNYVRENLDKALASHHIKVYCQPIVRSLNGKVCSCEALARWDSPEYGLL 227

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S + F+   EE  +I  ++ +++E++AR + S   Q   P + I IN +  D    +   
Sbjct: 228 SPALFIPTLEEARLIDRLDRYVVEQMARRLHSQLKQ-GQPVLPISINFSRLDFQLMDPVR 286

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  +++   S + +    +E+ ++   +  R  L R RK G  + LDDFG+  S L+ 
Sbjct: 287 LLEDTLTRYQLSRNLLYPEVTENALVLQDDSIRQGLCRFRKAGFKVWLDDFGSGYSSLNV 346

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           L    F T+K + + +   T++   IL +I+ MAK +    +A+ +      + L  +GC
Sbjct: 347 LKDYHFHTLKLDMAFLHPFTKESRTILTAIVRMAKELGVHTLAEGVETREQAQFLRDIGC 406

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
           + +Q  +   PL         ++R 
Sbjct: 407 EKLQGYYFGRPLPAAECRPYCRDRN 431



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 16/172 (9%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +  ++ +   +  D LTG+ NR+ F D L      +A  +N +   +  D++  KK ND 
Sbjct: 1294 RDLMQRLDRLSKSDQLTGLLNRRGFKDCL------AALPENRQYAFVFGDLNGLKKANDT 1347

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD ++V+        +   D + R+ G+ F +I    +        A A+   + 
Sbjct: 1348 EGHEAGDQLIVAAADVFR-HVGQTDFIFRMGGDEFLMIQEIRHPED-----ANALVNKLE 1401

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
                     I +  +   +           +L  A+  MY  K R  +    
Sbjct: 1402 AHFQTAGISIALGCTTAASPI----DDIDTVLTRADALMYRQKSRQRHRKFP 1449



 Score = 59.6 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 5/171 (2%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN-RQSFLDRLTTILDLSATDDNL 564
           N  I       +D+ E++      +  A  D  TG+ N R   +  L          D+ 
Sbjct: 823 NDRITGIALCFHDLDEEENRPLEDMHAAVTDEETGLLNYRGMVMAGLRYADTFRLYGDDY 882

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             T+  ID+ ++  I    G      +L  +T  + + L     ++ +    F ++    
Sbjct: 883 TATL--IDVPEFDAIGLTYGQEFRRHLLQKVTGILTQYLPSTITISHIGSCCF-LLFQKS 939

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
               ++ +  + M  +I     +     T+         +    +   +L+
Sbjct: 940 TQIAQLREAHVQMANAIHEIQQVDGFPCTLYMHYAIVRGSE-ARSLDSLLQ 989



 Score = 41.9 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 416 DIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFV 472
           + VW  D+      +          G  +G + G  R++   ++H  DR  F   +D   
Sbjct: 580 EGVWYLDLEHKVLEIIVPLTADQQTGTVNGDIDGTFRHFTDYFVHPRDRQRFLAFVDRNR 639

Query: 473 GYRR------GRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYI 513
            ++R        ++  FR+  ++  F W+II    +  +  GDIL YI
Sbjct: 640 FHQRAAASQCSVVREPFRILRSNGNFEWLIITGLALPKSPKGDILFYI 687


>gi|257469728|ref|ZP_05633820.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
 gi|317063960|ref|ZP_07928445.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
 gi|313689636|gb|EFS26471.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
          Length = 610

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 173/477 (36%), Gaps = 16/477 (3%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDIT-----EQKKSLEGILCNAFQDNLTGIPNR 544
             + +              I ++     DI+     E K            D +T +P  
Sbjct: 134 GSWQYFFYSEEKEREFFRAIKKFWEFNEDISPSILIENKNMKNLFHKVDQFDPVTNLPTY 193

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
            SFL    + ++    ++     V  +DI  +K +N + G   G+  L S    I +   
Sbjct: 194 TSFLQESESYINK---NEKKNIAVFYVDIIGFKSLNRIYGEYQGNCFLSSFADYIQKH-P 249

Query: 605 FPDILARLSGNRFGIIL--ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                 R+  + F  +       +  ++ +  I               +  +    G  +
Sbjct: 250 SYIASCRVYADNFIGVFSVPDGADLEEMVESFIKKGSDFLHHEAHHHPKCNLGFICGVCA 309

Query: 663 WTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
             +   +    +  A+      K        V           +  +   +  A EN + 
Sbjct: 310 VDNKNESIYSYISKADAVRKSLKPSLTTKGGVFDEERKKLFIKKQELHTRILSAFENDKF 369

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
                P +     +I+G EAL +        +   EF+ + EE   I  ++  + +++  
Sbjct: 370 TFYLQPKVDTRINKIIGAEALARMVENGKEVMMPGEFIPLMEETGDIVKLDFLIYKKVCA 429

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I + R +  +P   I +N++     +         ++S     P  I+L  +E+V + N
Sbjct: 430 YIKN-RMEDELPLFPISVNVSRDHFKNPHFVAQFHKIVSDHGIDPKYIELEITENVFVNN 488

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TG-STEKRIAI 898
            E   + + +L+ +G  + LDDFG+  S L+ L  IPFD +K +   +  G  ++K   +
Sbjct: 489 LEDILIPIKKLKNLGYCIQLDDFGSGYSSLNLLKTIPFDLIKLDKGFLGRGEISDKNKIL 548

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++ II +   ++  ++ + +     +  L ++G   +Q  + + P   N   ++  E
Sbjct: 549 IKGIIQLCTALDIPLLCEGVETAEQMDFLKKIGYFTLQGFYFSKPTCVNKFERIYNE 605


>gi|195873978|ref|ZP_02700085.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195631217|gb|EDX49777.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 998

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 220/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + + +D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHRHNGGSYDIHYSITPLSTLDGDKIGSVLVIHDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.3 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNQPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|239628818|ref|ZP_04671849.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518964|gb|EEQ58830.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 883

 Score =  311 bits (796), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 96/443 (21%), Positives = 183/443 (41%), Gaps = 19/443 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K++   +      D LT + NR  F    +   DL       R  ++  DID +K IND 
Sbjct: 146 KRNQRKLETAVSTDKLTSLLNRAGFE---SAATDLLRQQAKSRFVIVAFDIDNFKMINDS 202

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           +G   GD +L +L   +        + ARL  + F  IL++E N   I +    +  +  
Sbjct: 203 IGYVQGDQLLCALASALKSWKAGNYLCARLDADDF--ILLAEANEAIIPELQDILEHTTK 260

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SF 700
             + L      V  + G     ++      ++  A++A   AK      +  +       
Sbjct: 261 AQVFLEPFG-GVGFTYGAYQIQNNGELIKTIMDKAKMAHKAAKATADKSLVWYDGKLLEK 319

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +    +KE L  A+ N E  L   P + L +  IVG EAL++W+ P  G +    F+ +
Sbjct: 320 LTQDRKLKEQLQHALVNQEFGLYLQPRVELSNLRIVGAEALVRWELPGQGTLYPDSFIPL 379

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE   I  ++ +ML+++   + + ++Q       I IN +   L      E   +++ +
Sbjct: 380 FEENGSIADLDFYMLKKVCGYLHNRQEQ-GQELFPISINFSRVTLYYQAFYETFHSIVDQ 438

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I++  +ES      +    +L RL + G  + +DDFG+  S ++ LG +P   
Sbjct: 439 YPIPYDCIEIEVTESAFNDIADIVLQMLNRLDEEGFPIAMDDFGSGYSNMNLLGSLPLRI 498

Query: 881 VKFNGSLMTGSTEKRIAILRSII----PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +K +   +  +       ++ II     +A  +   I+ +    E  +  L  +GCD+ Q
Sbjct: 499 IKLDKVFLQEADIHDR--VKGIIICAVELAHTMGVQIVCEGAETEPHVNFLREIGCDFAQ 556

Query: 937 DSHVASPLGFNSILKLLKERFPL 959
             +   P+   +      +++P+
Sbjct: 557 GYYFTKPIPQKAF----DQKYPV 575



 Score = 92.3 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 15/178 (8%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
               +A D+TE  +     L NA  D+LTG  NR+            S         V  
Sbjct: 719 YIFTVAYDVTELYQEDMFNLQNALTDSLTGAQNRRYLEMH-------SEQFFGHYAAVF- 770

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            D+D +K +ND+ G  +GD VL      I E +     + RL G+ F  I  S   +  +
Sbjct: 771 -DLDHFKAVNDLEGHLIGDKVLRDFVNFIREQVSGVMAMIRLGGDEFLAIFQSGETAGGV 829

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           ++     R               ++ S+G              L   +  MY  K R 
Sbjct: 830 SEALEQARIRYEAAYRQHG---NLSFSMGIGQL---GKEIDAALDELDQLMYKDKQRN 881


>gi|89091843|ref|ZP_01164798.1| hypothetical protein MED92_06746 [Oceanospirillum sp. MED92]
 gi|89083578|gb|EAR62795.1| hypothetical protein MED92_06746 [Oceanospirillum sp. MED92]
          Length = 558

 Score =  311 bits (796), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 127/562 (22%), Positives = 237/562 (42%), Gaps = 19/562 (3%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + + S+ E+Q     GS   +   D+    + T P    I G     + G   + L   H
Sbjct: 8   EVLMSEIEQQ--LFRGSPQAIMVTDLDNCIIQTNPAFEKITGYTFAEVAGENLSKLGAGH 65

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
           +N  + F   +   +    G  Q E   +  D   +     I  + + +G++  YI    
Sbjct: 66  LN--EGFYETVWLTLSNE-GSWQGEIWNKHKDGSVYPCWYSIVTLQDQSGNVSGYITQFF 122

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           D +  K S + +   A  D LT +PN + F   L+  L+    +D  +  VM++D+D++K
Sbjct: 123 DCSALKSSGQSLAQAAQYDELTHLPNWEMFEGLLSARLEKCKANDE-QLAVMLVDLDRFK 181

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            IND LG AVGD +L  + RR+G +++  D LARLS + F ++L   +        A  +
Sbjct: 182 WINDNLGRAVGDSLLQEVARRLGSVVRGEDALARLSSDEFVMMLPCVDGVEAAIKVAQRV 241

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +   I +  REI ++ S+G + +        +++K A++AMY AK  G N    +  
Sbjct: 242 VDQLTHGIFVDHREIFISGSVGISVFPQHSGRGKDLVKKADVAMYAAKQGGRNTFRVYSE 301

Query: 698 SSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              RS    I  +EDL  A+ + ++ + + P+  +   ++V + A   W HP+ G I   
Sbjct: 302 LMERSKGPQILREEDLTKALVSGDIQMGFMPVYSIYSHQVVAVHARPSWTHPELGQIPFQ 361

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F  + +    +     ++   ++   + W     +   F+   + S+ L   E  +   
Sbjct: 362 DFSALLQNPESMSQYEFWLDSELSGLDVIWEKFPGLR--FVSFRLESQQLQGKENIQRWL 419

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS-LLSYLG 874
           + +++      ++ +       M        LL         L++  F    S  L +L 
Sbjct: 420 SQLNRYQ-RSGQMMIDVDLKTAMEREGELFDLLTS----DALLSVSGF-VCHSPSLEHLK 473

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            I  D +K +  L++     E R  I+ S++ MA  +E  ++A  +       +L   GC
Sbjct: 474 EIQPDMIKLDSDLISTMRTDEGRQKIVDSVLNMADKLEIEVLADGVSSAGARGQLMSQGC 533

Query: 933 DYIQDSHVASPLGFNSILKLLK 954
             +Q  +   PL    +L  L 
Sbjct: 534 MLMQGRYFGMPLTLQQLLDHLA 555


>gi|323693534|ref|ZP_08107738.1| hypothetical protein HMPREF9475_02601 [Clostridium symbiosum
           WAL-14673]
 gi|323502389|gb|EGB18247.1| hypothetical protein HMPREF9475_02601 [Clostridium symbiosum
           WAL-14673]
          Length = 647

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 203/427 (47%), Gaps = 11/427 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LT +PNRQ  LD +  ++         + T+ V+ + ++++IN+V G   GD+ L  
Sbjct: 220 RDYLTNVPNRQELLDMMGLLI---KKHPEKQFTLAVVSLRQFRQINNVCGQHKGDEFLRK 276

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   + E +   D + R SG+ F ++  SE++   I     A+R+ +  P  + E   T+
Sbjct: 277 ICGYLCE-IGPRDGVYRFSGDEFALLFTSESD-GDIRKCLAAIRERMKQPWEVEEYRFTL 334

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLC 712
           + ++G    T S  T    + + E A++ AK    G        + +    R  + + L 
Sbjct: 335 SVAVGVIRRTRSGDTLETAINSIEYAVFQAKTGRHGFICYCDEVMLAELERRNSVIQILK 394

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             ++N    + Y PI    D      E+L++ +H   G +  SEF+ +AEE  +I  I  
Sbjct: 395 DELKNPSFEMYYQPIYSAEDGAFHYAESLMRLNHTPIGPVYPSEFIPVAEETGLIIEITY 454

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +L+++ + I    +Q       I +N ++    + +L + +  +I +     ++IK+ F
Sbjct: 455 IILDKVCKYINRLTEQGIEVGA-IHVNFSAVQFSEPDLSQKVLDIIKRNGTLFTKIKIEF 513

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ES +  NP         + + GI + LDDFGT  S +S + +IPF TVK + SL+  + 
Sbjct: 514 TESTLAENPRLVTEFAYEMNQYGIMMGLDDFGTGYSNISTVFHIPFGTVKLDKSLVYAAM 573

Query: 893 EKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           EK+ A   +R++I   KN+   +IA+ +  E   + +     D IQ  + +  +  + + 
Sbjct: 574 EKKTAFYAVRNLISAFKNLGMRVIAEGVETEEQKRLVLDCQVDQIQGFYYSRLMSEDDME 633

Query: 951 KL-LKER 956
              L +R
Sbjct: 634 AFMLAQR 640


>gi|160878398|ref|YP_001557366.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
 gi|160427064|gb|ABX40627.1| diguanylate cyclase/phosphodiesterase [Clostridium phytofermentans
           ISDg]
          Length = 656

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 180/449 (40%), Gaps = 13/449 (2%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +     I  + +  +  +     D +TG+PN      +          +     T    
Sbjct: 213 ILAFFYSILHRNRIKKRRMDMGAVDKITGLPN-PLLHKKKVKEKLTKGNESYAYVTFC-- 269

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            ID ++ I ++ G    + +L  +  +I  +L   ++  R   + FG++L          
Sbjct: 270 -IDNFELIYELSGKQYCEKLLKQIASKIQIMLVDGELFTRYQNDEFGMLLEYHGELNLRK 328

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 + +  +P        ++T   G        +   ++++ A     +  +    +
Sbjct: 329 RLVEMFKYAGDLP-QEDNNFCSITFQCGVCEM-KKNMDVKDLIQYARQVRNNEVNGYTPN 386

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
           +E +     + ++  I+ ++  A+ ++E  +   PI++L  + I G EAL++W+H   G 
Sbjct: 387 IEFYNKKEEKGEQPKIE-EITNALSHNEFLVYLQPILQLDTKRIAGAEALVRWNHKMDGI 445

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +  + F+ + EE   I  +++++LE +   +  W D+     + I +N++ K L   E  
Sbjct: 446 LPPNVFLPMLEEDGSIVKLDMYVLEEVCEYLRDWMDK-GKRAVPISVNLSGKHLERPEFI 504

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++         ++  FSE  + G  +  +  + +LR++G  + +D FG   S L 
Sbjct: 505 TELVEIVDYYQIPHELLEFEFSEVNLYGAMDMMKNAIQKLRELGFLIAIDQFGAGFSSLQ 564

Query: 872 YLGYIPFDTVKFNGSLMTGS-----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L  +P   +K +  L+        + +   I+  I+  AK    T+IA+ +  +     
Sbjct: 565 LLKELPIHVLKIDKKLIMNLEDSEFSNQEKTIVMHILSFAKARNLTVIAEGVETKEQQDL 624

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L    CD +Q  +   P+      +LL  
Sbjct: 625 LIDQQCDMMQGFYYQKPMPSEEFERLLDA 653


>gi|323497552|ref|ZP_08102569.1| hypothetical protein VISI1226_22035 [Vibrio sinaloensis DSM 21326]
 gi|323317301|gb|EGA70295.1| hypothetical protein VISI1226_22035 [Vibrio sinaloensis DSM 21326]
          Length = 819

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 213/570 (37%), Gaps = 34/570 (5%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI-HI 458
                E            V   D     +       ++ G     + G   N      H 
Sbjct: 126 AQQAAEIFYSVFENQHHGVVVTDSQTRILACNQHFESMTGYLRNELVGLKTNIFNSENHH 185

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +D   F+ +  +      G        R A        + I+ ++ S G+   +IG  +D
Sbjct: 186 DDH--FKGMWRAI--EANGHWSGVLLSRHASGSVFPQNLTIQKITPSQGE-HYFIGFGSD 240

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ++    S+E I      D LT +P  + FL  LT   + +     +   V+ I  D    
Sbjct: 241 MSADLASIEDIESGGV-DLLTQLPTAEHFLTELTKQSNKADRYHTIL--VLAIQPD---- 293

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF-GIILISENNSLKIADFAIAM 637
                       +  +    + E          +  +RF   + +S  +  +        
Sbjct: 294 ----FSHQDSQKLKQAFASYMREKTTAQ-FCGYMDSDRFLACLPVSVEHPKQRVRDIART 348

Query: 638 RKSIAMPINLLEREITVTAS---IGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHV 692
            K+         + +  +     +G + +     T + ++ +A  A+   H+        
Sbjct: 349 LKTFFHCFKHASQPVYDSLKSGLLGVSIYGVDAETPNRLISHACQAILELHSGESRRIAF 408

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +      +  ++  +   + N  + + + PI+ +  ++I   EAL ++   +  + 
Sbjct: 409 YDRDIHLQVERKKRLENHVHQVLANDSIDVYFQPIVDVQRQKITKFEALCRFPPMEGESA 468

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            + +++ IAE++  I  ++  M     R   + +       + + IN +     D +L E
Sbjct: 469 KTQDYIAIAEDMGRILELDDKMTVMAFRQFKTLQQHFGEE-VKLSINRSLN--CDADLAE 525

Query: 813 GMQAL---ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
            ++ +   +     +P  + + F+ES  + + E S  L+  LR  G+S+ +DDFGT C+ 
Sbjct: 526 VLKRIALALDDEGVNPESLIVEFTESAFLESDEDSTRLIQFLRDAGVSIAVDDFGTGCAS 585

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             YL    FD +K +   + G T +     I+ ++I ++  +  T++A+ +  E +++ L
Sbjct: 586 FHYLKQRFFDVLKIDRQFIRGVTAQSRESDIVNTLIQLSHQLGLTVVAEGVETEQELEVL 645

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            ++G D IQ    A P   + I  L+ E +
Sbjct: 646 MQLGVDEIQGFLFAKPEPIDQI--LIHEHY 673


>gi|77464644|ref|YP_354148.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389062|gb|ABA80247.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           2.4.1]
          Length = 508

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 98/434 (22%), Positives = 181/434 (41%), Gaps = 13/434 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R   +  L  +L    +        +V+  D   K+ D  G A   +VL     R+
Sbjct: 71  GLALRPQVIASLDRVLQDRESTGRTT-ACLVLQFDGMDKLLDRHGRATQSEVLARCCDRL 129

Query: 600 GELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
              L+  D +ARL G    + L      +   +   A  ++ +IA PI++    I VT S
Sbjct: 130 CSTLREGDTVARLEGGGLAVALHPVRRLDLQSVVLLAGRLQTAIAAPISVEGTRIHVTCS 189

Query: 658 IGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLA 714
           IGF     +   T   +L  A++A   A   G   V ++ +   R+      +   L  A
Sbjct: 190 IGFCLAERTPAPTGRALLDAAQMAADEASRNGPGAVRAYALGMSRNRADRDADRGLLETA 249

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +    + P IR  D  I G E L +W HP+ G +   +F+   E   + + +   M
Sbjct: 250 LDTGQFTGWFQPQIRTEDGAIGGFEVLSRWQHPERGLLLPQDFLPAIERAGLSERLGEVM 309

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +    +  W       P  + +N ++ DL +  L + ++  + +   +P+R+ +   E
Sbjct: 310 LFQALTALRHWDRAGLCVPC-VAVNFSATDLRNPRLVDRLKWELDRFELTPARLSVEILE 368

Query: 835 SVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           +VV     +     +  L   G  + LDDFGT  + ++ +       +K + S +    S
Sbjct: 369 TVVAEGASDVVVHNIAGLSACGFGVDLDDFGTGHASITTIRRFALRRLKIDRSFVTRADS 428

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  +L +II MA+ +    +A+ +    ++  LT +GC Y+Q   +A P+  +    
Sbjct: 429 DAAQRTMLAAIISMARQLGLETLAEGVETPGELATLTALGCGYLQGYAIARPMPLSDATA 488

Query: 952 LLKE---RFPLVKN 962
            L+    R PL   
Sbjct: 489 WLENRRVRLPLAAR 502


>gi|92113790|ref|YP_573718.1| diguanylate cyclase/phosphodiesterase [Chromohalobacter salexigens
           DSM 3043]
 gi|91796880|gb|ABE59019.1| diguanylate cyclase/phosphodiesterase [Chromohalobacter salexigens
           DSM 3043]
          Length = 823

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 173/436 (39%), Gaps = 19/436 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T +P R     RL   ++ +        ++  +  D  + +    G+   +     +
Sbjct: 390 DQVTDLPGRFLLERRLQNFMEDA-----YAVSLYYLAFDSLRHLRAQFGVEYANVAAQCV 444

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+          ARLS + F ++     +       A   ++    PI +      + 
Sbjct: 445 AERLRGTCGGVCYPARLSDDVFVVMASGAQDP---MALAQRYQEDFDTPIEVHGVPHRLE 501

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
             IG A       T + +L+ A+ A        G   + F++   ++      + E L  
Sbjct: 502 PRIGVAISPEHGKTPTALLQAAQDAADQVLASAGTEPQFFQLDMLKTAERRRILAETLAD 561

Query: 714 AVENSE--LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           A+E       L   P  RL   E+VG EALI+W HP  G IS  EF+ +AE    I  ++
Sbjct: 562 ALEEESPFFELYLQPQYRLAKRELVGAEALIRWHHPALGTISPGEFIPVAEASHQIVPLD 621

Query: 772 LFMLERIARDIIS---WRDQA--NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
             + + +   +     W  +   N   +   IN++ +   D    + + A   K   +P 
Sbjct: 622 EKVFDAMLAWLSHNIMWPKEGMANGRSLVWAINLSIRHFDDMRFTDWLLARCKKYGIAPQ 681

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I+L  +E V   +  + R ++  LR  G  L LDDFG   + L +L  +PF  VK +  
Sbjct: 682 SIELEVTEHVATQDLGQVRQVMRTLRLHGFGLVLDDFGAGYTSLRFLKELPFTKVKLDKV 741

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      E+   +++ I  +A+ +  T++A+ I  +  +  L  +GC   Q   +  P 
Sbjct: 742 YVDSIADDERSQLLVKGITDLARGLGLTVVAEGIETQEQLDILRGLGCPIGQGYLLGRPG 801

Query: 945 GFNSILKLLKERFPLV 960
             +  L  L ++  + 
Sbjct: 802 PVDDFLYRLADKRAVT 817


>gi|126463484|ref|YP_001044598.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105148|gb|ABN77826.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17029]
          Length = 508

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 178/425 (41%), Gaps = 10/425 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R   +  L  +L    +        +V+  D   K+ D  G A   +VL     R+
Sbjct: 71  GLALRPQVIASLDRMLQDRESTGRTT-ACLVLQFDGMDKLLDRHGRAAQSEVLARCCDRL 129

Query: 600 GELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
              L+  D +ARL G    + L      +   +   A  ++ +IA PI++    I VT S
Sbjct: 130 CSALREGDTVARLEGGGLAVALHPVRRLDLQSVVLLAGRLQTAIAAPISVEGTRIHVTCS 189

Query: 658 IGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLA 714
           IGF     +   T   +L  A++A   A   G   V ++ +   R+          L  A
Sbjct: 190 IGFCLAERTPAPTGRALLDAAQVAADEASRNGPGAVRAYALGMSRNRADRDAYRGLLETA 249

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +    + P IR  D  I G E L +W HP+ G +   +F+   E   + + +   M
Sbjct: 250 LDTGQFTGWFQPQIRTEDGAIGGFEVLSRWQHPERGLLLPQDFLPAIERAGLSERLGEVM 309

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +    +  W       P  + +N ++ DL +  L + ++  + +   +P+R+ +   E
Sbjct: 310 LFQALTALRHWDRAGLCVPC-VAVNFSATDLRNPRLVDRLKWELDRFELTPARLSVEILE 368

Query: 835 SVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           +VV     +     +  L   G  + LDDFGT  + ++ +       +K + S +    S
Sbjct: 369 TVVAEGASDVVVHNIAGLSACGFGVDLDDFGTGHASITTIRRFALRRLKIDRSFVTRADS 428

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  +L +II MA+ +    +A+ +    ++  LT +GC Y+Q   +A P+  +    
Sbjct: 429 DAAQRTMLAAIISMARQLGLETLAEGVETPGELATLTALGCGYLQGYAIARPMPLSDATA 488

Query: 952 LLKER 956
            L+ R
Sbjct: 489 WLENR 493


>gi|163748687|ref|ZP_02155940.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161331797|gb|EDQ02601.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 879

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 113/428 (26%), Positives = 209/428 (48%), Gaps = 5/428 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + +++K+ E ++ +A  D+LTG+PNR  F++RLT  +         R  ++ ID+D++K 
Sbjct: 439 VAQRRKAEEQLVYDASHDSLTGLPNRGMFMERLTQAVKHIRRHGRDRFGLLFIDLDRFKL 498

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  LV  +RR+   ++  D L R+ G+ F I+L S   +    + A  + 
Sbjct: 499 INDTLGHQQGDRFLVETSRRLRLCIRDNDTLGRIGGDEFVILLDSIKGTHDAKEVAERIF 558

Query: 639 KSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  +  T  ASIG A   +    T+  +L++A+ AMY AK +G      F  
Sbjct: 559 TELSRPYELANQSFTSGASIGIAFSCNHKSDTAESLLRDADAAMYQAKSKGKGCYVIFDD 618

Query: 698 SSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S R     V ++ +L  A+ N EL+L Y PI  L +   V LE  + W+HP  G +   
Sbjct: 619 KSHRQLIKDVELEIELKHAISNRELHLSYLPIQNLKNLSTVALEPRLYWNHPLLGKVKQV 678

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   IAE   +   +++++LE++  D    R+Q+    + + +NIA+K L        ++
Sbjct: 679 QLNNIAEHCNLTTELDIYLLEKLNSDHQLLREQSLDH-LPLHLNIAAKHLKHKHTVRQLK 737

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + + ++ P ++ L F E   + + +        L+++ ++L L  +G+  S LS L +
Sbjct: 738 NKLKELIFPPEQLWLFFDEKGFILDTDNHINAFDILQRLKVNLGLTGYGSAHSALSSLTF 797

Query: 876 IPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + S  T    ++   +L++    A+ +E  +    I      + L  +G + 
Sbjct: 798 LPLQGLKLDPSYTTHLNSEQHLKLLKAHYLTAQALELVVFVDGIGAIQQKETLLEIGFEL 857

Query: 935 IQDSHVAS 942
            Q   +  
Sbjct: 858 GQGQALGK 865


>gi|291536542|emb|CBL09654.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
          Length = 534

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 92/405 (22%), Positives = 170/405 (41%), Gaps = 15/405 (3%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A  D LTGI N+       + +L+      +     + +DI+K++ IN   G++ GD+
Sbjct: 136 YRAEYDILTGIYNKTHMFQATSAMLE---RYPDRHFAFVRMDIEKFQLINSFFGMSAGDE 192

Query: 591 VLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           +L  +   +   ++        R+  + F   +  EN    +  F          P++  
Sbjct: 193 LLKYIADLLICAVRNRSDVTFGRMDADIFCFCVSYENTKELVESFDKMRDILSRYPLDFD 252

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVM 706
              I      G       KIT   M   A LA  H K     +   +  ++S        
Sbjct: 253 IVPIF-----GVYLIAGKKITPDHMYDRANLAAKHCKGNYIRNYAFYTRQMSQEIEKEQR 307

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I   +  A+EN E  + Y P   L D +I G EAL++W HP+ G IS  EF+ + E    
Sbjct: 308 IVNSMKSALENHEFVVFYQPKYGLSDNQIAGAEALVRWKHPERGMISPGEFIPVFERNGF 367

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++ ++ E+    +  W D+    P+ I +N++   L + ++   +  L+        
Sbjct: 368 ITKLDYYVWEQTCIQLRKWMDEGKN-PLPISVNLSRVSLYNKDIVNVICNLVDSYRIPRR 426

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
             ++  +ES    NP+  + ++ RLR+ G  + +DDFG+  S L+ L  I  D +K +  
Sbjct: 427 LFQVELTESAYNTNPKAVQDMMQRLREEGFYILMDDFGSGYSSLNVLKDIVVDVLKMDMK 486

Query: 887 LMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
              G   +     I+ ++I MAK +   ++A+ +     ++    
Sbjct: 487 FFAGDDREGRGENIMAAVIRMAKWLNMPVVAEGVERIEQVEFFAE 531


>gi|205360262|ref|ZP_02681543.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205350978|gb|EDZ37609.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 998

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 217/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A+++    +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLGIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|126727711|ref|ZP_01743542.1| putative sensory box/GGDEF family protein [Rhodobacterales
           bacterium HTCC2150]
 gi|126702967|gb|EBA02069.1| putative sensory box/GGDEF family protein [Rhodobacterales
           bacterium HTCC2150]
          Length = 768

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 98/447 (21%), Positives = 194/447 (43%), Gaps = 21/447 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +       A  D LT + NR+     L    +   +      T++ ID+D +K +N
Sbjct: 308 ELVIANNQTEFQALHDPLTELFNRRG----LDAAFEARKSYGITEGTLIHIDLDHFKNVN 363

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFP------DILARLSGNRFGIILISENNSLKIADFA 634
           D +G   GD VL  + R +   ++        DI+AR  G+ F ++L  +         +
Sbjct: 364 DNMGHTAGDFVLSEVGRILTSEVRSGNGERLPDIVARTGGDEFVVLLGPQATIETAEILS 423

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
             +   I  P+      + + AS G AS       + S++L  A+ A+Y AK  G N + 
Sbjct: 424 TRLLAKICEPMPFDSISLQIGASFGIASTHDGLVSSLSDLLAAADAALYDAKDSGRNCIR 483

Query: 694 SFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S      ++  +     LA+ + E    + P       ++ G+E L +W   + G 
Sbjct: 484 YYTESLHGKVVEQRQLALKFRLAISDREFEPYFQPQFDAHTGKLSGVEVLARWPSEQLGL 543

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           ++   F+ IA +L M+  ++  + ++ +  I++   +    P  I  N+ ++ ++     
Sbjct: 544 VTPDTFLPIARQLYMMGELDQIIFDKASDQIMTLHRKGIRVP-KISFNVTAERVISGGAL 602

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
           + +++L      +  +I +   ESV++ +  +   + + +LRK+ + + +DDFG+  S L
Sbjct: 603 KAVRSL----GKNRPQISIEVLESVIVEDQLDGFWIEIEKLRKLEVVIEIDDFGSGHSSL 658

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
                +  D +K +  L+   T    A  +L+ I+ MAK I   + A+ +      K  T
Sbjct: 659 VGALELQPDVLKIDRRLIIPITTSEQAKKMLKQIVGMAKIIGLKVTAEGVETIEHAKIAT 718

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
             GCD +Q   +A P+    +   L+ 
Sbjct: 719 DCGCDILQGFGLALPMPIAELEAFLQN 745


>gi|224373599|ref|YP_002607971.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589923|gb|ACM93659.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 682

 Score =  310 bits (795), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 188/427 (44%), Gaps = 30/427 (7%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T  K   + +  + + + LTG+PNR+  L  +                ++++DID +K+
Sbjct: 280 VTSLKSYQKNLYKSLYYNELTGLPNRKKLLSLMK----------KNDYPILLLDIDSFKE 329

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN   G  V D+++  +  R+ +       +  +  + F I+L    +  +I +FA  + 
Sbjct: 330 INYYYGEKVADEIIKKVAERLKDY-----RVFHIKIDEFAILLNKNISKEEIYNFAKELI 384

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K +  P  + +  I +    G A    + + +   L     A            E+ ++ 
Sbjct: 385 KKLEEPYEIGDYSIVIKFRAGIAYTHRNFMRALSALD----ATRFLNKDIAFCSEAEKIR 440

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + ++  + L +A+EN+++   Y PI+   +  I   EAL++    K   IS   F+
Sbjct: 441 DSYQEHLIWLKKLKVAIENNKIVPFYQPIVD-KEGNICKYEALVRLIDEKNQVISPYFFL 499

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A++  +   I   ++++  +       + N       IN+++ D+ ++ + E +   +
Sbjct: 500 DVAKKSRLYFEITKQVIDKTFK-------KFNDSKYEFSINLSTLDMENDYIKEFIIDKL 552

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     P R+     ES  + N + +   +  L+K G  + +DDFG+  +   YL  +  
Sbjct: 553 SNFS-EPQRVSFEIVESEDIKNSKNAYEFIKELKKYGCKILIDDFGSGYANFDYLLSLGA 611

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +GSL+      +    I+++I+  AK ++  IIA+ +  +  ++ L  +  D  Q
Sbjct: 612 DGLKIDGSLIKNILTDKNSQIIVKTIVNFAKEVKMQIIAEFVENKETLEYLKTLDIDCFQ 671

Query: 937 DSHVASP 943
             + ++P
Sbjct: 672 GYYFSAP 678


>gi|317056528|ref|YP_004104995.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315448797|gb|ADU22361.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 571

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 198/468 (42%), Gaps = 15/468 (3%)

Query: 494 WMIIRIRPMSNSNGDILRYIGIAN-DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           W+  +     + + D + YI  +   ++E+ +         + D +TG+ N    +  ++
Sbjct: 108 WICNKDHIWRDEDIDDINYISRSACTLSEKLRLGAMASSYYYMDTITGVSNTNGLIRFVS 167

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++     D         ++I  +  +N  +G   G  VL     ++ E+    +I++R 
Sbjct: 168 KLIRRGVFD---NYGCAFLNIIGFNYVNKKVGFKTGTKVLKHYAAKLREVFCNDEIVSRP 224

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F II   EN   K+      +  ++   +N +     ++A  G     S      +
Sbjct: 225 GGDNFVIIFRKEN-IDKLKKVVDGL--TVKTRVNSVTIRFDLSARAGIYMVNSYDRAFDK 281

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRL 730
           ++      + +AK      +E +            +  +    A+E +E Y+VY P +  
Sbjct: 282 VMAYLSNCINYAKTYSRKKIEYYTKDIENKVIEHKEFCQKFRKALEKNEFYVVYQPKVYT 341

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            +  + G EAL++W +     I   EF+ I E+  +I  ++ ++LE+  + I  W D   
Sbjct: 342 KNNTLYGAEALVRWYN-DGKTIYPGEFVEIFEKEHLISDLDFYVLEQTCKTIRGWLDSGL 400

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ I +N ++  L D+EL E + A++ K       I++  +E+V +    +    +  
Sbjct: 401 N-PVTISVNFSNDHLGDDELVEHIIAIVDKYGIDHHLIEIEMTETVDVYEISKLLEYVDG 459

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA--ILRSIIPMA 906
           L K G ++ +DDFG   S L  L  I  D +K + + +       ++    ILR II M+
Sbjct: 460 LHKNGFTVAIDDFGIGYSSLLMLQSISVDVLKIDKAFIAEVTGDPEKRENVILRHIINMS 519

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +   I+A+ +        LT M C  IQ      PL  ++ L+ L 
Sbjct: 520 EELGVEIVAEGVETNEQRNNLTGMNCHRIQGYFYDKPLSSDAFLERLS 567


>gi|197263148|ref|ZP_03163222.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197241403|gb|EDY24023.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 998

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 218/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAI 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADPALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 912

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A+++    +A  +     +  L+R+G 
Sbjct: 913 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLGIKTLAGPVQNPQVLDTLSRIGV 972

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 973 DLIYGDTIAEAQPLDLLLN 991



 Score = 82.7 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|317499082|ref|ZP_07957361.1| EAL domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893602|gb|EFV15805.1| EAL domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 945

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 89/429 (20%), Positives = 170/429 (39%), Gaps = 13/429 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +   F + +  I+  + T D     ++  D + +K  N   G  +GD VL  
Sbjct: 497 HDTLTGLISFGRFHEEVERIILANKTSD---YMMIYTDFENFKYFNYKYGYTLGDQVLKD 553

Query: 595 LTRRIGELLKFPDILA--RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
               I    +    L   R+  ++F +   + +   +       + K     +   + + 
Sbjct: 554 FCSFIIGKTEEKHNLYFTRVVSDQFLMFRTASHEKDEYQGIIEEIEKINEEFMLRQKEKF 613

Query: 653 ---TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--I 707
               V    G    T    ++   +  A       K      V  +     +   +   I
Sbjct: 614 PQSNVVLRTGVYYVTPECRSTFYAIDAANYVRQKVKGGEKGSVRFYDDEMQKQRELENEI 673

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             D+  A+E  +  + + P   +   EI G EAL++W+      +S + F+ + E    I
Sbjct: 674 VNDMKEAMEQKQFKVYFQPKYSIKSHEITGAEALVRWERDNGTVLSPNAFIPVYENNGKI 733

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             ++ ++ E +   I           + I IN +S    D +       ++ K    P+ 
Sbjct: 734 IELDFYVFETVVEFIAENLKA-GREQVPISINASSFHASDPQTINTYINILKKYNVDPAM 792

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +E+ V+   E  R L    +  GI   +DDFG+  S+L+ +  IP D +K +   
Sbjct: 793 VEIELTETAVVSEYESVRKLFDSFQLHGIKTAMDDFGSGYSVLNTIVDIPVDVIKIDRGF 852

Query: 888 MTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +T   E    I  L+ +I M +N+   II + +  +  I+ L ++GCD IQ    + PL 
Sbjct: 853 ITSCLETDRGIYFLKHLIDMIRNLGYQIICEGVETDEQIEILRQIGCDEIQGYWYSKPLK 912

Query: 946 FNSILKLLK 954
                +LL+
Sbjct: 913 MEDYKELLQ 921



 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 124/331 (37%), Gaps = 23/331 (6%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDI---ATILGLASGSMHGPIRNWL 453
           Q      E+ S  +  S   ++++ +  D +           TI G           +  
Sbjct: 5   QVNRKQIEKLSTVLNNSRIKIFEYLVDEDTLVVYNNKFHIEKTIAGYM------DYIDNK 58

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             IH  DR+  + I              E R    D      ++    + N +G +   I
Sbjct: 59  SKIHPEDREKVKQIYKEAKEA-----TVEIREFGEDGDIKHSVLEFTKIVNEDGKLT-LI 112

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           G   +ITEQ+K  + +   A +D+LTG+ N+      +   L+           ++V+D+
Sbjct: 113 GSTRNITEQRKQEKKLKERARKDSLTGLYNQVYGKKCINKYLNRKK--PFDSCGMIVLDV 170

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIAD 632
           D +K +ND  G   GD VL  L   + E+ +  D IL R  G+ F I +    N   +  
Sbjct: 171 DCFKLVNDNYGHLFGDKVLARLAMLLKEVFRDNDSILMRAGGDEFVIFVKDILNIELVRK 230

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGN 690
               M+K     +   +   T+T S G      +    T  ++ +NA++A+Y AK RG N
Sbjct: 231 NVELMQKIRN--LQFGKTGCTITCSAGCCYLPENVSGYTYDQLFENADIALYKAKERGKN 288

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
                      S  +  +E     +E     
Sbjct: 289 CYVYCDSLQHFSSMIAEQEKQEEMLEARYFQ 319


>gi|238922923|ref|YP_002936436.1| hypothetical protein EUBREC_0511 [Eubacterium rectale ATCC 33656]
 gi|238874595|gb|ACR74302.1| hypothetical protein EUBREC_0511 [Eubacterium rectale ATCC 33656]
          Length = 558

 Score =  310 bits (794), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 105/538 (19%), Positives = 197/538 (36%), Gaps = 27/538 (5%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+  D +  +        L    M+   ++    ++  DR             
Sbjct: 27  DDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDATKHLRTLVYEKDRKLLENHKRKIYDG 86

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  R     R+  + N   W+  R   +++  G     IG  N+   ++++         
Sbjct: 87  KEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGKPRYIIGCMNETGTRQRA--------- 137

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DN++G+         + + L  S   + L    + I ID +  IN+V G   G+ +L  
Sbjct: 138 -DNISGL----LGEKEMASYL-YSQPKEKLSGYFIQIGIDDFGIINNVQGQIYGNYILKR 191

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   I E L     +  L  +++ ++ +   +   +      + + I   I     +   
Sbjct: 192 VAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDEFIVDENYKSIF 251

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
           + S G    ++    + E  K ++ ++  AK RGG  +  F    ++       I   L 
Sbjct: 252 SISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVSLRKNTILSALR 311

Query: 713 LAVENS--ELYLVYHPIIRLMDEEIVGLEALIQ---WDHPKWGNISSSEFMLIAEELCMI 767
            A  N      + Y PI+   D  I+G EAL++           IS  EF+ + E+  +I
Sbjct: 312 SATVNDFEGFEVYYQPILDSAD-RIIGAEALLRFFMHSDEGDEMISPVEFIPLLEKSRLI 370

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+L   A+     +         + IN++   ++   +   +   I      P  
Sbjct: 371 IPVGEFVLNEAAKMCREMQQYIAD--FRVNINVSYIQIMRGSMANKILTAIRANNLRPES 428

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +ES  M           +L +  I   +DDFGT  S L Y+  +  D VK +   
Sbjct: 429 ICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPDYVKIDKDF 488

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                S+EK   + R II M  +I   I  + I  E     +  +  DY+Q      P
Sbjct: 489 TARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKEEWACAMKEIHVDYMQGYLYGRP 546


>gi|207857559|ref|YP_002244210.1| hypothetical protein SEN2119 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206709362|emb|CAR33702.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 996

 Score =  310 bits (794), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 217/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVLEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+ +G 
Sbjct: 911 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSCIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 81.5 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|300868645|ref|ZP_07113257.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
 gi|300333339|emb|CBN58449.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 102/478 (21%), Positives = 190/478 (39%), Gaps = 71/478 (14%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           IV LIG +   ++       Q +    +R    +  + DI+   D        +P    I
Sbjct: 407 IVGLIGIST--NITDRKRTEQELRQSEQRFRSLIENATDIILIVDADGICRYVSPSQERI 464

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY-EFRVRAADNQFHWMI 496
           LG +   + G   +   ++H ++    R +LD  + +    L   E+RVR  + +   + 
Sbjct: 465 LGYSREEVLG--ESIFNWVHPDELHLVRRVLDGVIKHPCVGLGLAEYRVRHKNGKECVLE 522

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
                +      +   +   +D+TE+K + + +L +A  D LT +PNR   +DRL   L 
Sbjct: 523 AVATNLL-EEPAVQGIVVNCHDVTERKAAEDQLLHDALHDALTELPNRALLMDRLGQALA 581

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            +  + N R  V+ +D+D++K IND  G   GD +L ++ RR+   L+  D +ARL G+ 
Sbjct: 582 RARRNPNYRFGVIFLDLDRFKVINDSQGHQAGDRLLYAIARRLMSCLRSGDTVARLGGDE 641

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-------T 669
           F I+L    +       A  +++++  P++L   ++TVTAS+G A  T            
Sbjct: 642 FIILLEEIEDVSVAIATANRIQQALEQPLHLEGHKVTVTASMGIALSTPEYQWPGDILRD 701

Query: 670 SSEMLKNAEL---AMYHAKHRGGNHVESFRVSSFRSDRVMIKE----------------- 709
           +   +  A+    A Y       +      +      R  ++                  
Sbjct: 702 ADIAMYRAKALGKARYQVFAAAMHTHAVALMQLESDLRRAVELTCGEEGAEEGARGQGLG 761

Query: 710 -------------DLCLAVENSE-------------------------LYLVYHPIIRLM 731
                        ++    E +                            L Y PI+ L 
Sbjct: 762 AREREEETGDWGLEIRETEEENSSLAPNPYTLIPSSAPHPSPLTPSSPFVLYYQPIVSLS 821

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
              +VG EAL++W HP+ G ++ +EF+ +AEE  +I  +  ++L      ++ W+   
Sbjct: 822 RGIVVGFEALVRWLHPERGLVTPAEFIPVAEETGLIVPLGQWVLREACSQMVKWQKSL 879



 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 91/175 (52%), Gaps = 2/175 (1%)

Query: 782  IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
            + +++       + I +N++ +     +L E ++ ++ +T      +KL  +ESVVM + 
Sbjct: 961  VSNYQLPLPNSQLTIAVNLSGRQFAQPDLIEQIKQVLEETGLDGQYLKLEITESVVMEDG 1020

Query: 842  ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
            E +  +L +LR +GI L +DDFGT  S LSYL   P +T+K + S ++          I+
Sbjct: 1021 ESAVTMLSQLRDLGIHLCIDDFGTGYSSLSYLHRFPINTLKIDRSFVSRMGVDGDNSEIV 1080

Query: 900  RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            R+I+ +A ++   ++A+ +     + +L  +GC++ Q    + P+   +   LL 
Sbjct: 1081 RAIVMLAHSLGMDVVAEGVETSHHLAQLRSLGCEFGQGYFFSKPVDSEAATALLS 1135



 Score = 76.1 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 7/139 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRD---RVTTTPDIATILGLASGSMHGPIRNWLPY 455
            +      +  A+  S + +   D        +   P    I G +   + G    +L  
Sbjct: 53  SVSEALRLRDRAIAASNNGIVIADARLPDCPIIYCNPAFERITGYSQAEIEGKNCRFLQG 112

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +        L + +   R   +   +    D    W  + I P+ +  G +  +IG+
Sbjct: 113 --PDTDPAALEELRNALREGRAC-EVVLKNYRKDGTHFWNKLAISPVRDKKGQLTHFIGV 169

Query: 516 ANDITEQKKSLEGILCNAF 534
            +DI+ + ++ E  L  A 
Sbjct: 170 QSDISYRIEAQE-SLHQAT 187



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           AV  S D V   D     +      + +         +      + +      ++    +
Sbjct: 312 AVESSSDAVGMADARGTHIYQNQAFSELFEYETVEEFNASGGIPIVFADPAVAEDVLKTI 371

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            S         + E   R    Q   +++R   + ++ G I+  IGI+ +IT++K++ + 
Sbjct: 372 MS-----GNSWRGEVTKRTRTGQTIQVLMRADAIKDAAGKIVGLIGISTNITDRKRTEQE 426

Query: 529 ILC 531
           +  
Sbjct: 427 LRQ 429


>gi|218509726|ref|ZP_03507604.1| putative sensory box/GGDEF family protein [Rhizobium etli Brasil 5]
          Length = 320

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 148/321 (46%), Gaps = 11/321 (3%)

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKED 710
            ++ASIG A +     T++E+L+ +++AMY  K  G N  + F          R  I+ +
Sbjct: 1   HLSASIGIAIYPHHAATAAELLQKSDMAMYAKKRDGKNGAQLFDNVMLDRARSRAEIEAN 60

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +   +  S       PI+ L    I G EAL++ +HP+ G +  +E + +AEE   I  +
Sbjct: 61  IEAGLAESWFEAFLQPIVNLNGRSIAGFEALMRLNHPQKGLMPPTEIISVAEETGKIVRV 120

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++E+   ++      + M   ++ IN +        L   + A+  +    P RI +
Sbjct: 121 GNVIMEKAIANLAKISRISGMQDSYLAINFSPLQFE-PALPARLAAIAGRHGIRPERIVV 179

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V+M +  + R+++  LR+ G  + LDDFGT  S LSYL   P D +K + S    
Sbjct: 180 EITEAVLMHDNPQIRMIVTELRRFGCRIALDDFGTGYSSLSYLNRFPVDIIKIDQSFTRA 239

Query: 891 ST-------EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                    +K   ++  I  ++  +  T+IA+ I  E + + L +MG DY Q      P
Sbjct: 240 INDGDDDVRQKSRMLIEGITTLSHKMNCTVIAEGIETEEECRTLHQMGLDYGQGYLFHRP 299

Query: 944 LGFNSI-LKLLKERFPLVKNT 963
                +  +L+  +  + + +
Sbjct: 300 QHAAKLIEELMTPQSAVARAS 320


>gi|325680772|ref|ZP_08160310.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
 gi|324107552|gb|EGC01830.1| diguanylate cyclase (GGDEF) domain protein [Ruminococcus albus 8]
          Length = 552

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 190/468 (40%), Gaps = 15/468 (3%)

Query: 494 WMIIRIRPMSNSNGDILRYIG-IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
           W+       S  + D + YI   A  ++E+ +         + D +TG+ N         
Sbjct: 88  WVCGEGHTWSEEDIDDINYICKTACALSEKLRLGAMANSYFYMDTITGVSNINGLSRFAE 147

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
            ++       +       ++I  +  +N  +G   G  V+     ++ E L   +++AR 
Sbjct: 148 QLI---RRGKSTEYGFAFLNIVGFNYVNKKVGFKAGTKVMKMYASKLKEQLAKDEMVARP 204

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G+ F I    EN              S+ + +N    + +++A  G    T       +
Sbjct: 205 GGDNFVIAFKKENIEKIKKIVEGI---SLRIRVNSSTIKFSLSARTGIYMVTKPDKPFDK 261

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++     ++ +AK+    ++  +         +     +     ++  E ++VY P +  
Sbjct: 262 IMSYLSNSINYAKNYARENIVYYNKDVEHKVIEYREFCQKFRTGIDKQEFFVVYQPKVFT 321

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            +  + G EAL++W++     I   EF+ I E+  +I  ++ ++LE    D+  W D   
Sbjct: 322 KNNTLYGAEALVRWNN-DGRVIYPGEFVEIFEKEHLISDLDFYVLEHTCIDMRRWLDSGL 380

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
             P+ + +N ++  L D +L + +  ++ +     S I++  +E+V +    +    +  
Sbjct: 381 K-PVKVSVNFSNDHLGDEDLVKRITEIVDRYHIEHSLIEIEMTETVDVNEINQLLSYVDG 439

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR----IAILRSIIPMA 906
           L K G ++ +DDFG   S L  L  I  D +K + + +   T         ILR II MA
Sbjct: 440 LHKNGFTVAIDDFGIGYSSLLMLQTISVDVLKIDKAFIAEVTNDHLKRENVILRHIINMA 499

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +++   I+A+ +  +     LT M C  IQ      PL  +   K L 
Sbjct: 500 EDLGVEIVAEGVETDDQRDNLTSMNCHRIQGYFYDKPLMSDDFCKRLA 547


>gi|70728805|ref|YP_258554.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           fluorescens Pf-5]
 gi|68343104|gb|AAY90710.1| GAF domain/GGDEF domain/EAL domain protein [Pseudomonas fluorescens
           Pf-5]
          Length = 591

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 202/442 (45%), Gaps = 10/442 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + +E       +D ++ +PNR+ F   L  + D +  +  +   V  +D+    ++   +
Sbjct: 154 EQVEQRQRLTRRDPVSRLPNREQFQSDLYDLADENPGERRVLVLVDAVDMTVAHELTLAM 213

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+A  + ++  L +++   L     +  +S  RFG +L     +  I  F  ++ + +  
Sbjct: 214 GLAPFETIVRFLAQQLLAYLGRHVRVYHVSVKRFGFLLP---AAPGIERFLESLVRRLRR 270

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRS 702
               LE  +      G   +++ +    ++L+ A  A+  A  +R               
Sbjct: 271 QPPGLELPMIPGVCAGTVEFSTDRDAVPDVLRKAMFALELATLNRSTWAPYDVVRDQAYR 330

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +  D+  A+++ ++YL++ P   L D   V  EALI+WDHP  G IS +EF+ + E
Sbjct: 331 RAFNLASDISEALDSGQIYLMFQPRFALPDGAQVSAEALIRWDHPWLGPISPAEFIPVME 390

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +I  +  +++  +   + +W D        + IN++ +D  D ++ + ++A   +  
Sbjct: 391 RNALIHRVTHWVINAVLGKLQAWSD---GEVQRLSINLSPQDFEDQDIADVLKAACRRHG 447

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P R+++  +E   + +  R    L ++R +G+ + +DDFGT  S  +YL  IP + VK
Sbjct: 448 IEPHRLEVEITEGAWLRSNPRVLDQLSKIRALGMDVAIDDFGTGYSNFAYLHQIPANVVK 507

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S++T    + +   I RS+I +A+ +    +A+ I     ++ L   GCD  Q   +
Sbjct: 508 LDKSMVTDLESSAQHQKITRSVIALARELGYRTVAEGIESFKCLQMLRTFGCDEAQGYFL 567

Query: 941 ASPLGFNSILKL-LKERFPLVK 961
           A P+     L     +RFPL +
Sbjct: 568 ARPMVQEKFLARSAAQRFPLQQ 589


>gi|126666781|ref|ZP_01737758.1| sensory box/GGDEF family protein [Marinobacter sp. ELB17]
 gi|126628826|gb|EAZ99446.1| sensory box/GGDEF family protein [Marinobacter sp. ELB17]
          Length = 283

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 136/279 (48%), Gaps = 9/279 (3%)

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G   +  F        R    ++ DL LA+E S+  L Y P +      + G 
Sbjct: 1   MYRAKSDGRGSLRFFEPKIDADMRARRNLEADLRLALERSQFELAYQPQVDAAGSFVCGA 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP+ G +S  +F+ +AE+  +I  I  ++LE+  RD ++W        I + +
Sbjct: 61  EALLRWRHPQRGIVSPLDFIELAEDTRLIVPIGRWVLEQACRDAMAWPST-----IRVAV 115

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++       L   +   +  +     R++L  +ESV + + +++   L  +R +G+ +
Sbjct: 116 NLSAVQFRHGSLLRDVLGALQLSGLPARRLELEITESVNLADAQQALSTLREVRSLGVQV 175

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            LDDFGT  S +SYL   PFD +K + S +          AI+R+++ ++ ++      +
Sbjct: 176 ALDDFGTGYSSVSYLRDFPFDRIKIDRSFVRDVDTSSTTQAIIRAVVDLSHSLGMKTTVE 235

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            I     ++ + ++GC  +Q   V  P     I+ ++++
Sbjct: 236 GIETSQQLQIVQQLGCSEVQGYLVGRPCAAAEIIDIIRK 274


>gi|197337374|ref|YP_002158680.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           fischeri MJ11]
 gi|197314626|gb|ACH64075.1| cyclic diguanylate phosphodiesterase domain protein [Vibrio
           fischeri MJ11]
          Length = 526

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/401 (24%), Positives = 189/401 (47%), Gaps = 6/401 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     ++     +  I I  Y+ + +       + +L   +  + +     ++      
Sbjct: 115 LIEDKINNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVKKHRNDRNVSIFYDN 174

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           N   II+ +  N  KI + A+ + + +  PI +  +   +   IG   +++    + EML
Sbjct: 175 NE-IIIIGNLTNKDKINNIALDVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEML 233

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           K  ++A Y AK  G          +   +  V I   L  A+ N E  L Y PI+  +D+
Sbjct: 234 KRVDIACYKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDK 293

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + G EALI+W       I   +F+ IAE+   IK I  +++ ++A DII    + +   
Sbjct: 294 TLHGYEALIRWPQKDGSMIPPDKFISIAEKNNYIKGITQWVVSQVASDIIRL--KNDNLN 351

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + INI++ DL D++L   +  +++     PS + L  +ES +M + + + L+L +L +
Sbjct: 352 FQVHINISTLDLYDDDLYNQLFDMVANKHLEPSSMILEVTESALMSDVDAAYLMLSKLSE 411

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
           +G  +++DDFGT  S LS L  + F+ +K + S +          AI+ S I +A ++  
Sbjct: 412 LGFYISIDDFGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGC 471

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++A+ +  E    EL  +GCDY+Q  +++ P   +SI+  
Sbjct: 472 NVVAEGVEDEHLFAELQELGCDYVQGYYISKPQDIDSIINW 512


>gi|34557353|ref|NP_907168.1| GGDEF family protein [Wolinella succinogenes DSM 1740]
 gi|34483069|emb|CAE10068.1| GGDEF FAMILY PROTEIN [Wolinella succinogenes]
          Length = 516

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 188/437 (43%), Gaps = 31/437 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR+  L  +       +T       +++ D+D + +IND+ GI  GD V+  +
Sbjct: 69  DRLTGLGNRRKLLKDIE------STPKEQALGLVIFDVDSFGEINDLFGIHGGDGVIRQI 122

Query: 596 TRRIGELL-------KFPDILARLSGNRFGIILISENNSLKIADF-AIAMRKSIAMPINL 647
              + E +       K  + L RLSG+ F ++ +   +  ++    A A+ +       +
Sbjct: 123 GNFLKEFVGREGIGGKEGEYLYRLSGDEFALLFLQAPSEDELLRISAKAVLELSQRRFFV 182

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDR 704
              +I +T S G A  +       E+   A  A  +AK        + E           
Sbjct: 183 KSNDIRLTMSAGVARSSKH----QELYFGANSAKNYAKKERLEVALYDERMNHKEAYKKN 238

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +   + L  ++ +  +   Y PI+     +I   E L +        I  S+F+ +A++ 
Sbjct: 239 LFWLKKLKESILHHRIIPYYQPIVNSKTGKIEKFETLARMIDEIGAVIPPSQFLEVAKKS 298

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   I   ++E   +            P    IN++ KDLL+ +  +     +      
Sbjct: 299 KLYPEITKTIIEESFKTFAK-------EPFLFSINLSIKDLLNQKTMDFFFDRLKHYGV- 350

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S++ +   ES  + + E +R +L  +R+ G ++++DDFG+  S   Y+  +    +K +
Sbjct: 351 ASKLSVEIVESESIHDYEGARRVLEEIRQAGCNISIDDFGSGYSNFGYILKLNAKFLKID 410

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GSL+      EK  +I+++I+  AK      +A+ ++ +  ++++  +G DY+Q  +V  
Sbjct: 411 GSLIKEIAQDEKSQSIVKAIVYFAKETGLFTVAEFVHSKEVLEKVVGLGVDYLQGYYVGE 470

Query: 943 PLGFNSILKLLKERFPL 959
           PL   +     KE  PL
Sbjct: 471 PLDGRAYFSRPKENQPL 487


>gi|325829840|ref|ZP_08163298.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
 gi|325488007|gb|EGC90444.1| diguanylate cyclase (GGDEF) domain protein [Eggerthella sp. HGA1]
          Length = 1005

 Score =  309 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 236/637 (37%), Gaps = 43/637 (6%)

Query: 337  AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
            A  L+   ++  +        +   +                  ++    +   + +   
Sbjct: 389  AASLVVGLLIAVVAAWLSSSRLRHLMSEVRAAQPEQPIAFTPTGIVEVDELSEAIESMGE 448

Query: 397  SQGIFSDGERQSLAVLGS--GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
               + +   R S  +  S  G   +++    D +T T      L     ++  P  ++  
Sbjct: 449  EVAMTAS--RLSRILRLSDRGIGAFEYSYETDAITFTDGFFATL----STLEPPDPSYFD 502

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR----IRPMSNSNGDIL 510
               I       +  +S + +    ++ E      + ++ +        +R +   +G+  
Sbjct: 503  PQRIATGSLSASEFESLMKWYVPYIEVE-----EEGRYLFTGPHRTSWVRLVVVESGEHN 557

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            R +G+  D+T + ++   I      D LTG+ NR++F   +T +L            +++
Sbjct: 558  RVLGLVEDVTHEIETRRRIEHERDHDILTGLFNRRAFEQEVTDLLA---QRPPALGAMLM 614

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            +D+D  K IND+ G   GD  + +  R + E  +     +R+SG+ F + +    +   +
Sbjct: 615  LDLDNLKFINDIYGHDWGDQYIKAAGRVVDEAFRDKGFYSRISGDEFLVFVDVCPDRASV 674

Query: 631  ADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             D     R  +     +    + + V AS+G A +       + + + A+ AMY AK   
Sbjct: 675  EDLFATFRAMLDASSIVAPDGKTLKVRASMGAAFYPEDATDFAHLREYADFAMYLAKSSR 734

Query: 689  GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
               + SF   S+     ++    DL   +E   +   + PI+ L   E V  EAL++   
Sbjct: 735  KGDLFSFDRQSYEEKSFIVNNKEDLNRLLEEGLVEYHFQPIVDLRAGEPVAYEALMRSQL 794

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN-IASKDL 805
                  +  + + +A     +  +              + +        + +N IA++ L
Sbjct: 795  DT--IPTPDQVLALARSQSKLYRVEHLTFFGALEAFSRYPEAHGA---TLFVNSIATQRL 849

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++  E +     +      R+ +  +ES         +  L   R+ G  L +DDFG+
Sbjct: 850  SSDD--ELVLN--ERYPDLLKRLVIEITESDYSREMALYKEALA--RRFGARLAIDDFGS 903

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
              +  + L     D VK +  ++      +    I R++I  A +    +IA+ +  E +
Sbjct: 904  GNNGETSLLDYHVDFVKIDMEIVRDIDVAKDHQDIARNLIGYAHDRGIRVIAEGVETEAE 963

Query: 924  IKELTRMGCDYIQDSHVASPLGF-----NSILKLLKE 955
            ++ L  +G DY+Q      P        + + +L++ 
Sbjct: 964  LRALRELGADYVQGYLTGRPAPEPRDVDDEVKRLIRS 1000


>gi|261415607|ref|YP_003249290.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372063|gb|ACX74808.1| diguanylate cyclase/phosphodiesterase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326708|gb|ADL25909.1| GGDEF/EAL domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 646

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 183/436 (41%), Gaps = 16/436 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  +        D LTG+PN   F + +  +L     +   R   +  D++ +K  N+  
Sbjct: 220 RLTQQAEIARNHDKLTGLPNALLFSNYVQDLLF---RNPRKRYAFVAFDLENFKAFNERF 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD  L  +      L      +  +S + F ++  +     KI +    +R     
Sbjct: 277 GFEEGDGALKFMADTFKTLFGER-YVTHVSCDTFRVVGDASGMKAKIKEAHDKIRSFSTQ 335

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +        +    G                 A LA    K     +V  +       +
Sbjct: 336 GV--------LELKAGVYVQRVENENVERCFMRARLAEATTKGVYDEYVAVYADEMGARE 387

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           R+   +   +  AVE   + + Y P++ +   ++ G EAL +WD P+ G +   +F+ + 
Sbjct: 388 RLKMYLIAHIDEAVEKEYIKVFYQPVVDINTNKLCGFEALARWDDPEHGFLPPLDFVGVL 447

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I+ ++LF+L++I               + I  N++  D   +++ + +  L  + 
Sbjct: 448 EDAHLIQKLDLFVLKKICEKYRV-ETNLGNKCVPISFNLSRLDFKLSDIYKELTRLTKEY 506

Query: 822 LYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                 I +  +ESV+ G+ +   R  + R +  G  + +DDFG+  S L+ L    FD 
Sbjct: 507 NVPHEMIHIEITESVLDGDEDGYIREQVTRFQNDGFEVWMDDFGSGFSSLNVLKDYDFDF 566

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K +   +   +EK   I+R+I+ MAK +    +++ +  +  +  L  +GCD +Q  + 
Sbjct: 567 LKIDMMFLRNFSEKSKVIIRAIVEMAKLLHIGTLSEGVEIKEHLDFLKEIGCDRVQGYYF 626

Query: 941 ASPLGFNSILKLLKER 956
           + PL ++ ++ +LKE+
Sbjct: 627 SKPLPYDEVMAVLKEK 642


>gi|225851410|ref|YP_002731644.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225645904|gb|ACO04090.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 621

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/422 (23%), Positives = 183/422 (43%), Gaps = 25/422 (5%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             A+ D+LTG+ NR    + +T ++DL          VM++DID +K+IND  G  +GD 
Sbjct: 220 QRAYTDSLTGVFNRNYLEE-ITDVIDLKD------YIVMLVDIDHFKRINDTYGHEIGDR 272

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLE 649
           VL      I + L+  DI+ R  G  F ++L +           A  +  +I    N   
Sbjct: 273 VLSKFAELIKQNLRRDDIIIRYGGEEFLVLLKNYRKQKKDSLKVAERLMDTIE---NTEF 329

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
             I +T SIG    T      ++ +K A+ A+Y AK  G N +E F  +   SD      
Sbjct: 330 SGIRITVSIGINMDTDKSRNLTDAIKKADTALYKAKREGRNRIEIFTEAKDDSDIS--LS 387

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L   +EN ++   Y P++ L  +E +  EAL +  H     +  ++++   +   +   
Sbjct: 388 QLKEIIENGQVICHYQPVVNLKSKEPIYYEALARIVHKD-KILPPAKYIDQIKGTFLYSK 446

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
               ++E   + +  +      P + I IN+A  D L+  +   +  +         RIK
Sbjct: 447 FTKNVIEYNLKTLERY------PLVNISINLAPTDFLNESILNILMEI---DDIYVKRIK 497

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L   E+  + + E  +  + +L + G  + LDDFG       YL  I    +K +GS++ 
Sbjct: 498 LEVIETEDITDYESLKENIEKLSRKGYEIALDDFGRGYINFYYLTEIKSKYLKIDGSVIK 557

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +K     I+++++   K+     IA+ +  +    +L  +G +Y Q  + + P    
Sbjct: 558 NIPKKDQYCKIVKNLVNYCKDTNKIAIAEFVENKEIYLKLLELGFEYGQGYYFSKPGPAE 617

Query: 948 SI 949
            +
Sbjct: 618 KM 619


>gi|302879540|ref|YP_003848104.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302582329|gb|ADL56340.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 332

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 2/308 (0%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
              ++ +    ER   A+ G+GD VWDW+I +D V  +     + G     +      W 
Sbjct: 26  SRLNRKLLESEERWKFALEGAGDGVWDWNIPQDTVVFSARYKEMAGYTDEDIAANEAAWR 85

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRY 512
             IH  DR      + +++         E RV   D    W++ R   +    +G  +R 
Sbjct: 86  NRIHPEDRTQVDAEIRAYLDGVTPAYYNEHRVLCRDGSVKWVLARGMIVSRMPDGTPMRM 145

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           IG   DITE+K   E +   A  D LT +PNR    +RL   +  +  D      VM +D
Sbjct: 146 IGTHADITERKNMEERMRHMAHYDLLTELPNRALINERLQQAVIKARRD-KTFMAVMFLD 204

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D++K +ND LG  VGD +L  + +R+   ++  D +ARL G+ F ++L +         
Sbjct: 205 LDRFKPVNDELGHDVGDLLLKQVAQRLLSSVRASDTVARLGGDEFVVLLPAIEQQQDATV 264

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +  ++  P N+LE +I ++ASIG A++         +L NA++AMYHAK  G N +
Sbjct: 265 VAEKILHALKQPFNVLEYDIHISASIGIAAYPEHGEDEKLLLINADIAMYHAKKDGRNDL 324

Query: 693 ESFRVSSF 700
             +     
Sbjct: 325 RFYMHGMR 332


>gi|309777724|ref|ZP_07672673.1| putative sensory box sensor/GGDEF/EAL domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914490|gb|EFP60281.1| putative sensory box sensor/GGDEF/EAL domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 646

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 171/426 (40%), Gaps = 14/426 (3%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
             F D LTGI NRQ F   L          D+   +++V+ +  ++ IND      GD +
Sbjct: 219 QLFTDPLTGILNRQEFNHLLE-----IRMKDSDPYSIIVLSLKGFRFINDHFSQRAGDML 273

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L+ +   + +       + R SG+ F I+  +         +   +   +    ++   +
Sbjct: 274 LIRICEYLEKQ-MPAARIFRFSGDEFAIVCRN---EQVCLHYHKQLIARMQHSWSVENFD 329

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKE 709
             +   IG            E++K  E A+  AK          +  +         I E
Sbjct: 330 FQIRYGIGILHVKEHNRGKDEIIKGLEYALRQAKRAEENTTCFCTTAMMERLYRNEQILE 389

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L   +      + Y PI  + ++     EAL++    + G +   EF+ +AEE  +I  
Sbjct: 390 LLRRCIREDSFVVYYQPIYDIEEQAYTKAEALLRLPPHELGQLRPDEFIPLAEENGLITE 449

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   +L +    +   +         I +N ++   L  +L   + ++I++       ++
Sbjct: 450 ITYQVLHKTCLFLQQLQQSGIPMKG-ISVNFSAVMFLQQDLANTILSIIAEYGIPAKLLQ 508

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES++  +P      + R+++ GI   LDDFGT  S +S +  +P  T+K + SL+ 
Sbjct: 509 IELTESMLARDPHMITAFMQRMKQEGIEFLLDDFGTGYSNISNVLSLPVQTIKIDKSLLW 568

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  +++   +L  +      +   ++ + +  E  +  +   GC YIQ  + A PL   
Sbjct: 569 QAMVSQEGAIVLHKMCEAFHEVHQQLLVEGVENEEQVAFVKACGCRYIQGYYYAPPLPQE 628

Query: 948 SILKLL 953
               +L
Sbjct: 629 RARMIL 634


>gi|302339033|ref|YP_003804239.1| diguanylate cyclase/phosphodiesterase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636218|gb|ADK81645.1| diguanylate cyclase/phosphodiesterase [Spirochaeta smaragdinae DSM
           11293]
          Length = 549

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 194/432 (44%), Gaps = 19/432 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   +  D+ T +PNR++ LDRLT               ++VI ++   ++   LG +V
Sbjct: 123 HLQWLSLHDSSTELPNRKALLDRLT-----------PNSLLIVISLENVMELKSTLGFSV 171

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            D+ +  L  R  ++      + R+   +  ++L    ++         +  +   PI  
Sbjct: 172 IDEAVRQLAARFLKMDMGKA-IFRIETRQLAVLLF-LKDTEDKDVALRTLISASREPILY 229

Query: 648 LEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRV 705
               I V + +G      +        L+ AE A+  A+ +   +   S  + +  ++ +
Sbjct: 230 NGISIHVDSRMGVTEIGENVFEPPERYLQEAEAALTIAEEKLQDSFPYSPEIMAATTENL 289

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +   +L  A+E+ EL L Y P +R+ D  + G EAL++W HP  GNI    F+  AE+  
Sbjct: 290 VTLGELKKAIEHCELSLHYQPKVRIADGMVCGAEALMRWTHPTRGNIPPGMFIPRAEQST 349

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I+ I  F L++    I+ W        I I +NI++++LL  +  + +  LI +     
Sbjct: 350 LIQLITEFALKQAMEQIVVWERYGIR--IPIAVNISTRNLLQPDFSDFIAKLIDQYGIRA 407

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             ++L  +E  +M + E++   + +L  + I +++DDFGT  S L YL  +P   +K + 
Sbjct: 408 ELLELEVTEGSLMVDIEQTVAEMMKLAGLKIIMSVDDFGTGYSSLQYLHKLPISFIKIDQ 467

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S ++ S   R A  IL   + +A  I    IA+ +  E     L  +GCD  Q   +  P
Sbjct: 468 SFVSRSPADRGAAGILEVAVDLAHKIGIKAIAEGVEDEKVYTFLHSIGCDMAQGYAITHP 527

Query: 944 LGFNSILKLLKE 955
           L  ++     + 
Sbjct: 528 LAPDAFKSWYER 539


>gi|302879082|ref|YP_003847646.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302581871|gb|ADL55882.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 352

 Score =  309 bits (792), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 150/325 (46%), Gaps = 2/325 (0%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           L+ +   +   +    +     ++ +    ER   A+ G+G+ VWDW I ++ VT +P  
Sbjct: 14  LLALAAFVIVILTAASVKLAKLARELHQSEERWKFALEGAGEGVWDWSIPQNTVTLSPRY 73

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             I+  +          W  +IH +DR      + +++         E R+   D    W
Sbjct: 74  KEIVCYSDEDTTAHQTTWHQHIHPDDRAEVDASIQNYLAGNGTSYYNEHRILCRDGAVKW 133

Query: 495 MIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
           ++ R   +   +NG  LR IG  +DIT +K   E +   A  D LT +PNR    +RL  
Sbjct: 134 VLARGMIISHGANGKPLRMIGTLSDITVRKNIDERLRYMAHYDPLTNLPNRALLSERLQQ 193

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +  +  D +    +M +D+DK+K +ND LG   GD +L  +  R+   ++  D +AR+ 
Sbjct: 194 SVVRARRDQST-MALMFLDLDKFKPVNDTLGHETGDQLLQQVAVRLLSCVRASDTIARIG 252

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F ++L + +     A  A  +  S+  P ++ E EI ++ SIG A++         +
Sbjct: 253 GDEFVVLLHAIDQEPDAAMVAEKILHSLNRPFSIGEHEIRISGSIGIAAYPQHGTDEKLL 312

Query: 674 LKNAELAMYHAKHRGGNHVESFRVS 698
           L NA++AMY AK  G N    F   
Sbjct: 313 LINADIAMYQAKKEGRNSYRFFTQE 337


>gi|291538351|emb|CBL11462.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis XB6B4]
          Length = 1046

 Score =  309 bits (792), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 174/452 (38%), Gaps = 17/452 (3%)

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +        +  + +   + I     +D LTG+ N ++F  RL  IL  +         
Sbjct: 601  RVTSVFVSLRN--KLRDDQKEIRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQ-GQEHYA 657

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++ IDIDK+  +N+  G   GD +L      I    +   +  R+  + F ++L  ++ S
Sbjct: 658  LVHIDIDKFSYVNENYGQQTGDAILKDFAGGIQTN-ERVLLACRMYSDYFILLLKGKDQS 716

Query: 628  LKIADFAI---AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                  A       + +           T+  S+G     +       +L++A LA    
Sbjct: 717  EIEKLVAWSTEHYEEKLKKRYPSG----TLRLSVGICHIENLNEKFDTILESANLARKLV 772

Query: 685  KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K +GG+ +  ++          + I      A++  EL +   P   L + +I G EAL 
Sbjct: 773  KEQGGSGICVYKEEMRAKRDDAIQITGRFYGAMQQGELEVYLQPKFNLEERKIYGAEALA 832

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W       I    F+   E +  +  ++ ++ E++ R +  W+         I  N + 
Sbjct: 833  RWRTKTGEMIMPGRFVPPLENIGYVVDLDFYIYEQLLRAMKRWKKAGKEL-FTISTNFSR 891

Query: 803  KDLLD--NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++           ++ +       P  I++  +ESVV+ N +  + +L  L K G  + +
Sbjct: 892  RNFESGGKNFAGRLKRMADHYGIDPKYIEVEVTESVVVENVDELKRVLSELEKFGFRIAI 951

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIY 919
            DDFGT  S L  L  IP D VK + S       +++   +  +     + +  +I + I 
Sbjct: 952  DDFGTGYSSLGVLLEIPADVVKIDKSFTDRINLKEQRNFVSQMGNFIHSAKEEVIFEGIE 1011

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             E  ++ L   G  Y Q      P+      +
Sbjct: 1012 TEEQLQFLRGCGFLYGQGYLFDRPIPLEEFER 1043



 Score =  180 bits (458), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 12/308 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNWLPYIHINDRDN 463
           + S+    + D+ +++D+   R    P    I G        +  I  WL +IH +++  
Sbjct: 134 QYSMLEEVTDDVPFEYDVKGKRFRI-PHKYHINGRLQKDDQDYMEIEKWLAFIHKDEQTL 192

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADN----QFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R ++ +    R     +++R+  A      Q+ W     R +  +NG IL+ IG + DI
Sbjct: 193 YREVIQNA-SEREMSGSFDYRMNTALGGGIPQYCWYRTVYRSIRGTNGKILKIIGRSYDI 251

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +K  E +     +D LT + N+ +  +    IL            + +IDID +K I
Sbjct: 252 SSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERIL---KEYPEGTHVLFLIDIDNFKSI 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD V+  +   + E      ++ R+ G+ F ++L+      +    A  + +
Sbjct: 309 NDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEF-LVLMDNTTLKQAEQKAKELCR 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                +   +  I VT S+G A         +E+   A+ AMY  K  G ++      + 
Sbjct: 368 HGEKKLVGDDAVIHVTMSVGLAVSGQDGNCYTELFDQADRAMYAIKRSGKSNYAFAGKNK 427

Query: 700 FRSDRVMI 707
               +  I
Sbjct: 428 TVHMKRNI 435


>gi|291523809|emb|CBK89396.1| FOG: EAL domain [Eubacterium rectale DSM 17629]
          Length = 558

 Score =  309 bits (792), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/538 (19%), Positives = 197/538 (36%), Gaps = 27/538 (5%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+  D +  +        L    M+   ++    ++  DR             
Sbjct: 27  DDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDATKHLRTLVYEKDRKLLENHKRKIYDG 86

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  R     R+  + N   W+  R   +++  G     IG  N+   ++++         
Sbjct: 87  KEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGKPRYIIGCMNETGTRQRA--------- 137

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DN++G+         + + L  S   + L    + I ID +  IN+V G   G+ +L  
Sbjct: 138 -DNISGL----LGEKEMASYL-YSQPKEKLSGYFIQIGIDDFGIINNVQGQIYGNYILKR 191

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   I E L     +  L  +++ ++ +   +   +      + + I   I     +   
Sbjct: 192 VAECIAECLSSGQRIYHLVTDKYMLVDMLSKSQDDVVQLFKRIGEKIDEFIVDENYKSIF 251

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
           + S G    ++    + E  K ++ ++  AK RGG  +  F    ++       I   L 
Sbjct: 252 SISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVSLRKNTILSALR 311

Query: 713 LAVENS--ELYLVYHPIIRLMDEEIVGLEALIQ---WDHPKWGNISSSEFMLIAEELCMI 767
            A  N      + Y PI+   D  I+G EAL++           IS  EF+ + E+  +I
Sbjct: 312 SATVNDFEGFEVYYQPILDSAD-RIIGAEALLRFFMHSDEGDEMISPVEFIPLLEKSRLI 370

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+L   A+     +         + IN++   ++   +   +   I      P  
Sbjct: 371 IPVGEFVLNEAAKMCREMQQYIAD--FRVNINVSYIQIMRGSMANKILTAIRANNLRPES 428

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +ES  M           +L +  I   +DDFGT  S L Y+  +  D VK +   
Sbjct: 429 ICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPDYVKIDKDF 488

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                S+EK   + R II M  +I   I  + I  +     +  +  DY+Q      P
Sbjct: 489 TARAMSSEKDYELFRKIIEMVHSINIKICIEGIEKKEWACAMKEIHVDYMQGYLYGRP 546


>gi|291535855|emb|CBL08967.1| diguanylate cyclase (GGDEF) domain [Roseburia intestinalis M50/1]
          Length = 1046

 Score =  309 bits (792), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 174/452 (38%), Gaps = 17/452 (3%)

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +        +  + +   + I     +D LTG+ N ++F  RL  IL  +         
Sbjct: 601  RVTSVFVSLRN--KLRDDQKEIRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQ-GQEHYA 657

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++ IDIDK+  +N+  G   GD +L      I    +   +  R+  + F ++L  ++ S
Sbjct: 658  LVHIDIDKFSYVNENYGQQTGDAILKDFAGGIQTN-ERVLLACRMYSDYFILLLKGKDQS 716

Query: 628  LKIADFAI---AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                  A       + +           T+  S+G     +       +L++A LA    
Sbjct: 717  EIEKLVAWSTEHYEEKLKKRYPSG----TLRLSVGICHIENLNEKFDTILESANLARKLV 772

Query: 685  KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K +GG+ +  ++          + I      A++  EL +   P   L + +I G EAL 
Sbjct: 773  KEQGGSGICVYKEEMRAKRDDAIQITGRFYGAMQQGELEVYLQPKFNLEERKIYGAEALA 832

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W       I    F+   E +  +  ++ ++ E++ R +  W+         I  N + 
Sbjct: 833  RWRTKTGEMIMPGRFVPPLENIGYVVDLDFYIYEQLLRAMKRWKKAGKEL-FTISTNFSR 891

Query: 803  KDLLD--NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++           ++ +       P  I++  +ESVV+ N +  + +L  L K G  + +
Sbjct: 892  RNFESGGKNFAGRLKRMADHYGIDPKYIEVEVTESVVVENVDELKRVLSELEKFGFRIAI 951

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIY 919
            DDFGT  S L  L  IP D VK + S       +++   +  +     + +  +I + I 
Sbjct: 952  DDFGTGYSSLGVLLEIPADVVKIDKSFTDRINLKEQRNFVSQMGNFIHSAKEEVIFEGIE 1011

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             E  ++ L   G  Y Q      P+      +
Sbjct: 1012 TEEQLQFLRGCGFLYGQGYLFDRPIPLEEFER 1043



 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 12/308 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNWLPYIHINDRDN 463
           + S+    + D+ +++D+   R    P    I G        +  I  WL +IH +++  
Sbjct: 134 QYSMLEEVTDDVPFEYDVKGKRFRI-PHKYHINGRLQKDDQDYMEIEKWLAFIHKDEQTL 192

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADN----QFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R ++ +    R     +++R+  A      Q+ W     R +  +NG IL+ IG + DI
Sbjct: 193 YREVIQNA-SEREMSGSFDYRMNTALGGGIPQYCWYRTVYRSIRGTNGKILKIIGRSYDI 251

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +K  E +     +D LT + N+ +  +    IL            + +IDID +K I
Sbjct: 252 SSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERIL---KEYPEGTHVLFLIDIDNFKSI 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD V+  +   + E      ++ R+ G+ F ++L+      +    A  + +
Sbjct: 309 NDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEF-LVLMDNTTLKQAEQKAKELCR 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                +   +  I VT S+G A         +E+   A+ AMY  K  G ++      + 
Sbjct: 368 HGEKKLVGDDAVIHVTMSVGLAVSGQDGNCYTELFDQADRAMYAIKRSGKSNYAFAGKNK 427

Query: 700 FRSDRVMI 707
               +  I
Sbjct: 428 TVHTKRNI 435



 Score = 38.4 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
             +    +G    +     R++   +++ D   F  +++     +R   + E R+ +   
Sbjct: 32  NAEFMKAIGHGEQAEPDRNRDFYDCVYLQDAGAFEDMIEKCREQKRAE-EIEVRIISGQG 90

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           Q  W+          +  +  Y+ I  +  ++K
Sbjct: 91  QICWVKFWCSIYYYKD-AVPYYLLICKNTNDRK 122


>gi|270264657|ref|ZP_06192922.1| putative sensor protein [Serratia odorifera 4Rx13]
 gi|270041340|gb|EFA14439.1| putative sensor protein [Serratia odorifera 4Rx13]
          Length = 1112

 Score =  309 bits (792), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 216/553 (39%), Gaps = 14/553 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
                 +  +  + ER  + +   G+ V   D         P    + G   G   G PI 
Sbjct: 542  EVRNLAGALHEEKERLHITLDAIGEGVISTDDEMHITFMNPVAEQMCGWPLGLAIGMPIA 601

Query: 451  NWLPYIHINDRDNFRTILDSFVGYRRG-RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              +   +  D +     +   +   R     Y   + + D     +   + P+   +G++
Sbjct: 602  GVVRLTNGKDGEEVENPIQCCLQENRALSTDYALVLHSRDGHHFDIQQSVSPLKTVDGEV 661

Query: 510  LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            +  + +  D+T  ++ +  +  +A  D LTG+PNR SF  RL   +  +   +  +  ++
Sbjct: 662  MGAVMVLQDVTASRELMRKLSYSASHDALTGLPNRTSFEKRLKAAI--AGAGEKQQHALV 719

Query: 570  VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
             +D+D++K +ND  G A GD +L  + + +   L+  D LARL G+ FG+IL        
Sbjct: 720  FLDLDRFKAVNDSAGHAAGDALLRDIAQLMKHHLRNSDCLARLGGDEFGLILFDCQREQA 779

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
             +     +      P     +   V AS G     ++   S E+L  A++A Y AKHRG 
Sbjct: 780  KSLTQQLVSHISQHPFFWEGKIYHVGASAGITHIDAASGNSGELLAQADIACYTAKHRGR 839

Query: 690  NHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
              V  +            +    +++   +   +L L    +      + V    L    
Sbjct: 840  GQVYLYEARQKTMQERQHQVLTRQEVTTIIAEGQLVLNVTAVAPPKTPQAVCFYQLKLQV 899

Query: 746  HP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P    +++  EF+  A+   +++ ++ +++ +I           +   + + + +A+  
Sbjct: 900  MPLDDRSLTRDEFIAAAQLYDLLQELDRWIIGQILTQHA---ADISRKGLSVALPLATDS 956

Query: 805  LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
            LLD +    +      +   P  + L   ++ ++ +    +  + +L+++G  L ++ FG
Sbjct: 957  LLDAQFQRDLLTTFGASPLQPEALLLMVDDTALLEHAAICKPFIHQLQQLGCKLIVNGFG 1016

Query: 865  TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
               +    L     D ++ +   +T     +    ++  +   A  ++   +A   +  I
Sbjct: 1017 HDLNAFDELHGQKIDYIRIDERFITNVHCNQMDELMVSMLNSAAHRVQAQTLAGPAHQPI 1076

Query: 923  DIKELTRMGCDYI 935
             +  L  +G D +
Sbjct: 1077 TLNTLQAIGVDLV 1089



 Score =  101 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/377 (10%), Positives = 111/377 (29%), Gaps = 26/377 (6%)

Query: 171 PQIYLW--EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFA----- 223
               LW      +   + + +        + + LA+   +  +V+   +     A     
Sbjct: 61  LPTKLWGLPLLAFWLAIVAASFTLFGYSWLPAKLALLNLLEAVVSTLLLRRLLSADDPLN 120

Query: 224 -------MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIAL-SSSLIIFLFMYLHW 275
                       + +  +    L+       G+   +   +     +  ++    + L +
Sbjct: 121 GLVSWLKFVVCAVIFTPLFSALLAAWWAPDPGQPFWYPFSTWFISEAVGVLSLTPIGLAY 180

Query: 276 NRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE 335
            R   +   +    +  +  L           + +A   L     +    +++  +    
Sbjct: 181 RRRMLETLSLFSLLLTLMGALAF---------SYLALSYLPFPFTFVILPLLWAAIALPR 231

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGY 395
                I     + +  +  +  +   L    +    +   +L++++   ++   + A   
Sbjct: 232 LEAFTICFCTTLMVTMMISFGLLHVHLTLTPLSNIEIYLPILLILIPAHSMAMVMHAFRE 291

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             + I     R   A+  S   +         +     +  +LG    ++H     +   
Sbjct: 292 EKRHIVESETRFRNALEYSAIGMALVSPQGKWLQVNQALCKLLGYTPEALH--RLTFQEI 349

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
            H +D D   T +   +         E R   +D +  W ++ +  + +  G  L +I  
Sbjct: 350 THPDDLDADLTQVRDLLDGHISSYTLEKRYIRSDGEHVWALLAVSLVRDPEGLPLYFISQ 409

Query: 516 ANDITEQKKSLEGILCN 532
             DI+E K++       
Sbjct: 410 VEDISELKRTAAENHRL 426



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +  +     I  +  T   +  +    ER +LA    G  VW+W +  + +T    +  +
Sbjct: 404 LYFISQVEDISELKRTAAENHRLV---ERITLANQVGGVGVWEWMMHGEVLTWDKRMYEL 460

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
             L+       +  W   +   DR+     + S + + R     EFR+     +   +  
Sbjct: 461 YDLSPDQ-TPTLSLWRTLLLPEDRERTDREIASLLEHPR-PFILEFRLLTRQGKVRHIRG 518

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKS 525
           +   + +  G  LR IG   D+TE +  
Sbjct: 519 QGNVILDEQGLPLRMIGTNIDMTEVRNL 546


>gi|167750162|ref|ZP_02422289.1| hypothetical protein EUBSIR_01131 [Eubacterium siraeum DSM 15702]
 gi|167656905|gb|EDS01035.1| hypothetical protein EUBSIR_01131 [Eubacterium siraeum DSM 15702]
          Length = 557

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 179/424 (42%), Gaps = 13/424 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D+  GIPN + F   +  + +     D     V+  +I     +N + G     +++  
Sbjct: 138 RDS--GIPNSKGFRAFIEEVKENGVLSD---YAVIRANIKGCNTLNTIFGYQATTEIIQR 192

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             R + + +   +I +R   + F +++   +    + +FA      +       +    +
Sbjct: 193 FARALNKTMYSDEICSRSGSDNFCLMVKKSHLKTHLKNFAKT---PVNFYYGKEKTVYEI 249

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712
               G      S      +L  AE  +  AK R  G          +      +++  + 
Sbjct: 250 ALRAGIVMLDDSTDDIDTILARAETCIDIAKRRADGDFVYYDLGTINREKQLTLLENGMP 309

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + E  + + P +R+    +VG EALI+W       IS ++F+ IAE    I  +++
Sbjct: 310 QALADGEFVVYFQPKVRVDTRTLVGAEALIRWKR-DGEIISPADFIPIAERTGFIMKLDM 368

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           F+LE     I  W++      + + +N +   L    L E +  +I++    P  +++ F
Sbjct: 369 FVLEHTCAMIKQWQESGKRT-VPVSVNFSKIHLRFPHLAEKIMNVINRYGIEPHYLEVEF 427

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGS 891
           +E+    +    +  +  L+  G+ +++DDFGT  S L+ L  + FD +K + SL  +  
Sbjct: 428 TETAYTDDFNAIKQAIIDLKSYGLMVSMDDFGTGYSSLALLKDLDFDILKLDKSLAGSDD 487

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +   +L +I+ MA+ +  T + + +  +  +  L  MGC+ IQ  +   PL  +    
Sbjct: 488 DARGQVVLENILHMAQELSMTTVCEGVEDKNIVDNLRNMGCNIIQGYYFDKPLPESEFAS 547

Query: 952 LLKE 955
            L+ 
Sbjct: 548 RLES 551


>gi|170724836|ref|YP_001758862.1| GAF sensor-containing diguanylate cyclase/phosphodiesterase
           [Shewanella woodyi ATCC 51908]
 gi|169810183|gb|ACA84767.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           woodyi ATCC 51908]
          Length = 874

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 199/436 (45%), Gaps = 4/436 (0%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++K  + ++ +A  D LTG+PNR  F+++L+  +  +      R  ++ ID+D++K 
Sbjct: 436 IAQRRKMEQQLVHDANHDTLTGLPNRGMFMEKLSQAIKHTRRHKLDRFALLFIDLDRFKL 495

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  LV  +RR+   ++  D L R+ G+ F I+L   N S    + A  + 
Sbjct: 496 INDTLGHIEGDRFLVETSRRLKLCIRENDSLGRIGGDEFVILLDRINGSQDAKEVAERVL 555

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
             ++ P  L  ++    ASIG A       TS  +L++A+ AMY AK  G      F   
Sbjct: 556 TGLSEPYKLANQQFKSGASIGIAFNQHKTDTSESLLRDADAAMYRAKANGKGCYVIFDDK 615

Query: 698 -SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + ++ +L  A+ +  L + Y PI  L   E + LE  + W+HP  G I  ++
Sbjct: 616 SHKQLDKDIELELELRNAISSRSLLVSYLPIEDLQTGETLALEPRLYWNHPSLGKIKQAK 675

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            + IAE   +   +++F+LE +  +    +  +    + + INI+   L        ++ 
Sbjct: 676 LLNIAEHCSLTTELDIFLLETLNSEYAQLQKMSLAH-LPLHINISGHHLKHKHALRRLKN 734

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + ++ +S  ++ L F E   + + +        L K+ ++L L  +G+  S LS L ++
Sbjct: 735 KLKQSYFSREQLWLFFDEQGFIFDTDNHINAFDLLTKLEVNLALSGYGSAHSALSSLTFL 794

Query: 877 PFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           P   +K + S       K    +L +    A+ +E T+    I  +   + +  +G +  
Sbjct: 795 PLKGLKLDPSYPCHLDSKQHKKLLNAHFLTAQALELTVFVDGISTKQQKESMLEIGFEQG 854

Query: 936 QDSHVASPLGFNSILK 951
           Q   +   L    +  
Sbjct: 855 QGQALGEVLRLQEVQA 870


>gi|167746931|ref|ZP_02419058.1| hypothetical protein ANACAC_01643 [Anaerostipes caccae DSM 14662]
 gi|167653891|gb|EDR98020.1| hypothetical protein ANACAC_01643 [Anaerostipes caccae DSM 14662]
          Length = 790

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 180/426 (42%), Gaps = 22/426 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   ++QD++TG+ NR S+       L+    D  +   V+ +DI+  K +ND  G   
Sbjct: 381 KLEQMSYQDSMTGLENRNSYTQYCGDFLE----DRPVPAGVIFMDINGLKIMNDKKGHMY 436

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD ++  +  ++ +         RLSG+ F I+                M  ++   ++ 
Sbjct: 437 GDILIGYIANKMKQFFPEGRKF-RLSGDEFLIVTERIE-----YSKFRTMLSAMEKSLSE 490

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             R I    S+G + W+  +    E++  AE  M   K     H       +  +++V +
Sbjct: 491 DGRCI---VSVGTS-WSDVQEDLPELVNKAERLMAINK-----HDYYRENKNIAAEKVPL 541

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  ++   E  +   P + +   +I   E L+++       +S  +F+ + E   +I
Sbjct: 542 LRELLGSIVKKEFLVYLQPKLHVKTGQIDSAEVLVRYREKDGSIVSPFKFVPLLESEGLI 601

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ F++E   R +  W    ++  + + +N +   L D+   E    +  K    P +
Sbjct: 602 SYIDFFVMEEACRLLTKW-KNTSLSDMKLALNFSRITLFDDHFFENFCKIFGKYDLKPDQ 660

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E+    N ++   LL +L+  G  + LDDFG + S   +L    FD +K +  +
Sbjct: 661 LELEITETQETLNKKQMAYLLKQLKNYGFCIALDDFGVEYSSYEFLMMASFDILKIDKGI 720

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     ++K   +++ II M+  I     A+ +  E   + + + GCDYIQ   +  P  
Sbjct: 721 IQKYQKSDKGDILVKHIIQMSHAIGIQCCAEGVETEEQFEFMKKAGCDYIQGYLIDKPAA 780

Query: 946 FNSILK 951
                 
Sbjct: 781 AGQFEA 786


>gi|317052573|ref|YP_004113689.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947657|gb|ADU67133.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 577

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 187/443 (42%), Gaps = 32/443 (7%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           + +Y G+  D  + ++  + +      D LTG+PNR      L         D     T+
Sbjct: 151 VQQYAGMLKD--KSRELNQEMTS----DRLTGLPNRVQLAKIL---------DTGQVTTL 195

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +++++D +  IN   G ++GD+ LV++  R+ E +     L R + + F  +L   +   
Sbjct: 196 ILLNVDNFSHINTTYGYSIGDEALVAIAGRLRECMSHGAHLCRFASDEFICLLPGYSVHE 255

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                   +RK+   PI L +++I +  +   A           +L+NAE+AM   +  G
Sbjct: 256 ARDFAHDVIRKAFLPPIRLQKKQIDLQITFTMAIAEGKGWD---LLRNAEVAMLETRELG 312

Query: 689 GNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            N +  ++      + + + +     L  A+EN  +   + PI+     +I   E L + 
Sbjct: 313 KNRIAVYQGKSPLEAKQKNNIYWMNRLRAALENKTVVPFFQPILNNRTGKIEKFECLARI 372

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
              +   IS  +F+  A+++ ++ AI   ++E+               P    +NI  +D
Sbjct: 373 W-EQGEIISPFQFLQPAKQVGLLPAITRSIVEKSFAHFS-------GKPYQFSLNIIDED 424

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L +  L + ++    +   +P ++     E V +         +  L+++G  + LDDFG
Sbjct: 425 LREGYLVDYLKEAFQRHNVNPGQVVFEILEGVSVYASHGIIEQMQALKELGCQIALDDFG 484

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922
            + S  S L  +  D VK +G  +    +   +  I ++II +  ++    IA+ +    
Sbjct: 485 AEHSNFSRLMDLQADYVKIDGMFIKNLDKDPRSVTITKAIINLTNSLGIQTIAEYVCSRE 544

Query: 923 DIKELTRMGCDYIQDSHVASPLG 945
             ++   +G  + Q  +V  PL 
Sbjct: 545 VHEKACELGISHSQGFYVGKPLP 567


>gi|317490002|ref|ZP_07948494.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911000|gb|EFV32617.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 997

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/637 (16%), Positives = 235/637 (36%), Gaps = 43/637 (6%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A  L+   ++  +        +   +                  ++    +   + +   
Sbjct: 381 AASLVVGLLIAVVAAWLSSSRLRHLMSEVRAAQPEQPIAFTPTGIVEVDELSEAIESMGE 440

Query: 397 SQGIFSDGERQSLAVLGS--GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +   R S  +  S  G   +++    D +T T      L     ++  P  ++  
Sbjct: 441 EVAMTAS--RLSRILRLSDRGIGAFEYSYETDVITFTDGFFATL----STLEPPDPSYFD 494

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR----IRPMSNSNGDIL 510
              I       +  +S + +    ++ E      + ++ +        +R +   +G+  
Sbjct: 495 PQRIATGSLSASEFESLMKWYVPYIEVE-----EEGRYLFTGPHRTSWVRLVVVESGEHN 549

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +G+  D+T + ++   I      D LTG+ NR++F   +T +L            +++
Sbjct: 550 RVLGLVEDVTHEIETRRRIEHERDHDILTGLFNRRAFEQEVTDLLA---QRPPALGAMLM 606

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D  K IND+ G   GD  + +    + E  +     +R+SG+ F + +    +   +
Sbjct: 607 LDLDNLKFINDIYGHDWGDQYIKAAGCVVDEAFRDKGFYSRISGDEFLVFVDVCPDRASV 666

Query: 631 ADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            D     R  +     +    + + V AS+G A +       + + + A+ AMY AK   
Sbjct: 667 EDLFATFRAMLDASSIVAPDGKTLKVRASMGAAFYPEDATDFAHLREYADFAMYLAKSSR 726

Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
              + SF   S+     ++    DL   +E   +   + PI+ L   E V  EAL++   
Sbjct: 727 KGDLFSFDRQSYEEKSFIVNNKEDLNRLLEEGLVEYHFQPIVDLRAGEPVAYEALMRSQL 786

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN-IASKDL 805
                 +  + + +A     +  +              + +        + +N IA++ L
Sbjct: 787 DT--IPTPDQVLALARSQSKLYRVEHLTFFGALEAFSRYPEAHGA---TLFVNSIATQRL 841

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             ++  E +     +      R+ +  +ES         +  L   R+ G  L +DDFG+
Sbjct: 842 SSDD--ELVLN--ERYPDLLKRLVIEITESDYSREMALYKEALA--RRFGARLAIDDFGS 895

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             +  + L     D VK +  ++      +    I R++I  A +    +IA+ +  E +
Sbjct: 896 GNNGETSLLDYHVDFVKIDMEIVRDIDVAKDHQDIARNLIGYAHDRGIRVIAEGVETEAE 955

Query: 924 IKELTRMGCDYIQDSHVASPLGF-----NSILKLLKE 955
           ++ L  +G DY+Q      P        + + +L++ 
Sbjct: 956 LRALRELGADYVQGYLTGRPAPEPRDVDDEVKRLIRS 992


>gi|332534237|ref|ZP_08410082.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036317|gb|EGI72788.1| diguanylate cyclase/phosphodiesterase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 389

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 170/369 (46%), Gaps = 4/369 (1%)

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L++  +R+  +   P + A +   +   I+ + + +       + ++ ++    N+  
Sbjct: 10  ALLINAYKRLKAMPDGPLLCAHIGVGKLAFIIGANSQNELEDKLLMQIKNTLDKTYNVFG 69

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
            +   +   GFA +      S+ +L NA  A+  A         + + S    ++  I  
Sbjct: 70  TKCQQSFLFGFAKYPDHGKNSTTVLSNACEALKVANCNMPLSGYNEKQSQAFIEKYEISM 129

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A++  +L + Y P +     + +GLEAL +W+ P  GN+S   F+ IAEE  M+  
Sbjct: 130 LLDEALQQGDLSVHYQPKVDAK-GQCIGLEALARWNSPILGNVSPVVFIPIAEEYRMVSR 188

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   +++++   I +W      P + + INI+  D    +    +   ++     P +I+
Sbjct: 189 LTDLIIQKVCAQIANWTKAGL-PSVPVAINISLIDFSQTDFMSKLVKYLADFNVKPPQIE 247

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E+ +  N   S  L+  L+  G ++++DDFG   S ++ L   P + +K + SL++
Sbjct: 248 LELTETSLEANQAHSLKLMQTLQSWGFTISVDDFGVGYSNIARLADYPINKLKLDRSLIS 307

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              S+ ++ ++++++  M + ++   +A+ +  +  +  + +MGC   Q  + A P+   
Sbjct: 308 QVTSSTRQKSLVKAVHVMCEELDIKCVAEGVETQEQVAIMAQMGCKEFQGFYFAKPMSAE 367

Query: 948 SILKLLKER 956
           S  + +   
Sbjct: 368 SFAEHVSRH 376


>gi|266624419|ref|ZP_06117354.1| GGDEF domain/EAL domain protein [Clostridium hathewayi DSM 13479]
 gi|288863726|gb|EFC96024.1| GGDEF domain/EAL domain protein [Clostridium hathewayi DSM 13479]
          Length = 932

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/666 (16%), Positives = 239/666 (35%), Gaps = 77/666 (11%)

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV----- 379
            ++    K    +       +L+    I + +++        I    + GLV  V     
Sbjct: 272 VLVGMARKNDLLSFYNSIRGMLLSSILIPIILSVFGVFVIGKIVTDPIRGLVNEVRKRSG 331

Query: 380 ---ILIGFTVIQHVLATGYFSQGIFSDGER----QSLAVLGSG--DIVWDWDIVRDRVTT 430
              + +    I  +       + + +D ER     S  +  +     V++++   + V  
Sbjct: 332 EHGLTLTRVHIGEIDELTETIEQLSADVERSASKISSILEHANVLIGVFEYEETNESVFC 391

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           +  I  ++G A         +            F+  ++  +           R    D 
Sbjct: 392 SRSIFEMMGWAEPEEPYCYMSSGE---------FQKRMEEAI-----------RNTKKDG 431

Query: 491 QFHWMIIRIRPMSNSNGD------------------------ILRYIGIANDITEQKKSL 526
             +   I + P S+  G+                            +G+ +D+T   +  
Sbjct: 432 VNYLFHINVSPASDDTGEAGVACGPAAFSRGRWVRLILDKQEPGTILGVLSDVTSDVEEK 491

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E +      D LT + NR++F ++L   +            V + D+D  K IND  G  
Sbjct: 492 EKLERERNYDLLTNLYNRRAFREQLVVAMAD---GGIQTAAVAMWDLDNLKYINDTYGHD 548

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF---AIAMRKSIAM 643
            GD  +V     +  L K   I++R SG+ F  ++       +I       +   +++++
Sbjct: 549 EGDRYIVLFASCLKRLEKDGAIVSRYSGDEFVTLIYGSGGKEEIRHRVTGFMQFLQTVSL 608

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +     +I +  S G A +    +    +L  A+ AMY  KH     +  F  + + ++
Sbjct: 609 EMK-GGYQIPIRVSGGMAWYPDDAVDFDTLLNYADFAMYMVKHSVKGIIMEFDSNDYSNN 667

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             M+   E+L   +E  E+   + PI R  D  + G E L++ +      I     +  A
Sbjct: 668 SYMLAGREELNRMLETREVDFAFQPITR-RDGSVFGYELLMRPNFTNLKGIKEVLNLARA 726

Query: 762 E-ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           + +L  ++ +  +   +        +  A      + IN  +   +     E    L ++
Sbjct: 727 QAKLTQMETLTWYAGLKAVE--KQDQAGALGQTERLFINSIASACMSK---EEEADLWNR 781

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                SR+    +E   + N E  R  +   ++    + +DDFG   +  + L  +  D 
Sbjct: 782 YGRYLSRVVTELTEGEPV-NQEYMRRKIAVTKEWNGLIAIDDFGAGYNSETVLLDMEPDI 840

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + SL+        R  IL +I+  A     T++A+ +  + +++ L + G +  Q  
Sbjct: 841 IKVDMSLVQRIHEDPNRQLILNNILDFAAQNHITVLAEGVETKEELEFLIQCGVELFQGY 900

Query: 939 HVASPL 944
           ++  P 
Sbjct: 901 YIGRPQ 906


>gi|240145958|ref|ZP_04744559.1| putative cyclic diguanylate phosphodiesterase domain protein
            [Roseburia intestinalis L1-82]
 gi|257201945|gb|EEV00230.1| putative cyclic diguanylate phosphodiesterase domain protein
            [Roseburia intestinalis L1-82]
          Length = 1046

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 174/452 (38%), Gaps = 17/452 (3%)

Query: 508  DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +        +  + +   + I     +D LTG+ N ++F  RL  IL  +         
Sbjct: 601  RVTSVFVSLRN--KLRDDQKEIRHLQDRDQLTGLYNLEAFKYRLKNILAEAKQ-GQEHYA 657

Query: 568  VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
            ++ IDIDK+  +N+  G   GD +L      I    +   +  R+  + F ++L  ++ S
Sbjct: 658  LVHIDIDKFSYVNENYGQQTGDAILKDFAGGIQTN-ERVLLACRMYSDYFILLLKGKDQS 716

Query: 628  LKIADFAI---AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                  A       + +           T+  S+G     +       +L++A LA    
Sbjct: 717  EIEKLVAWSTEHYEEKLKKRYPSG----TLRLSVGICHIENLNEKFDTILESANLARKLV 772

Query: 685  KHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            K +GG+ +  +R          + I      A++  EL +   P   L + +I G EAL 
Sbjct: 773  KEQGGSGICVYREEMRAKRDDAIQITGRFYGAMQQGELEVYLQPKFNLEERKIYGAEALA 832

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +W       I    F+   E +  +  ++ ++ E++ R +  W+         I  N + 
Sbjct: 833  RWRTKTGEMIMPGRFVPPLENIGYVVDLDFYIYEQLLRAMKRWKKAGKEL-FTISTNFSR 891

Query: 803  KDLLD--NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++           ++ +       P  I++  +ESVV+ N +  + +L  L K G  + +
Sbjct: 892  RNFESGGKNFAGRLKRMADHYGIDPKYIEVEVTESVVVENVDELKRVLSELEKFGFRIAI 951

Query: 861  DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIY 919
            DDFGT  S L  L  IP D VK + S       +++   +  +     + +  +I + I 
Sbjct: 952  DDFGTGYSSLGVLLEIPADVVKIDKSFTDRINLKEQRNFVSQMGNFIHSAKEEVIFEGIE 1011

Query: 920  GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             E  ++ L   G  Y Q      P+      +
Sbjct: 1012 TEEQLQFLRGCGFLYGQGYLFDRPIPLEEFER 1043



 Score =  180 bits (457), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 12/308 (3%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL--ASGSMHGPIRNWLPYIHINDRDN 463
           + S+    + D+ +++D+   R    P    I G        +  I  WL +IH +++  
Sbjct: 134 QYSMLEEVTDDVPFEYDVKGKRFRI-PHKYHINGRLQKDDQDYMEIEKWLAFIHKDEQTL 192

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADN----QFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           +R ++ +    R     +++R+  A      Q+ W     R +  +NG IL+ IG + DI
Sbjct: 193 YREVIQNA-SEREMSGSFDYRMNTALGGGIPQYCWYRTVYRSIRGTNGKILKIIGRSYDI 251

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  +K  E +     +D LT + N+ +  +    IL            + +IDID +K I
Sbjct: 252 SSDRKIQEQLSEEMRRDPLTHLYNKVATGEEAERIL---KEYPEGTHVLFLIDIDNFKSI 308

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  VGD V+  +   + E      ++ R+ G+ F ++L+      +    A  + +
Sbjct: 309 NDTFGHTVGDTVISDIASALEEQFPDHKLVGRVGGDEF-LVLMDNTTLKQAEQKAKELCR 367

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                +   +  I VT S+G A         +E+   A+ AMY  K  G ++      + 
Sbjct: 368 HGEKKLVGDDAVIHVTMSVGLAVSGQDGNCYTELFDQADRAMYAIKRSGKSNYAFAGKNK 427

Query: 700 FRSDRVMI 707
               +  I
Sbjct: 428 TVHMKRNI 435



 Score = 38.4 bits (88), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
             +    +G    +     R++   +++ D   F  +++     +R   + E R+ +   
Sbjct: 32  NAEFMKAIGHGEQAEPDRNRDFYDCVYLQDAGAFEDMIEKCREQKRAE-EIEVRIISGQG 90

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           Q  W+          +  +  Y+ I  +  ++K
Sbjct: 91  QICWVKFWCSIYYYKD-AVPYYLLICKNTNDRK 122


>gi|256823399|ref|YP_003147362.1| diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
 gi|256796938|gb|ACV27594.1| diguanylate cyclase/phosphodiesterase [Kangiella koreensis DSM
           16069]
          Length = 751

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/443 (21%), Positives = 189/443 (42%), Gaps = 21/443 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   +  + NA  D+ T + NR++  + L   +  S    +    V+ I I     I  V
Sbjct: 313 RDLQKKFVFNATHDSTTKLLNRKALFELLDEKIKYSFIHHDELF-VIAIRITNVVSIISV 371

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G     D++VS+ +++ +      + A      F +   ++++          + + + 
Sbjct: 372 FGYRKAIDIVVSVAKKLSKF--DQALSAHFGDGVFIVSTKNQSDVDS-------IIQVLG 422

Query: 643 MPINLLEREITVTASIGFASWTSSKI----TSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
              +L   +I     IG   +  S       SSE+++ A  AM +A+ +     +     
Sbjct: 423 DHSDLDSNQIYPVPVIGVFEFGGSPDGNLPRSSELVRKAITAMNYAERKRILVADYNPDI 482

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 + +  D        +  L Y   I +  E I  +EALI+W HP  G +S   F+
Sbjct: 483 EPDRRNLQLLSDFYKVG-CDQFVLHYQAQIDVDLEIITHVEALIRWMHPTLGLVSPYLFI 541

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + EE   I  +  ++++ + R I   + Q     I   +NI ++DL+D+   E ++  +
Sbjct: 542 PLLEESGNINKVTRWVIQEVIRFINGHKPQT--DNIKFSVNITTRDLIDDSFIEFVRKAV 599

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                  + +    +ES ++   ++++ ++  L  +GIS   DDFGT  S LSYL  +  
Sbjct: 600 K--DLETNSLIFEVTESELLEEKDKAKWVMLELESLGISCAADDFGTGYSSLSYLNELSI 657

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + VK + S +    +   A  I+ S I +A  +   ++A+ +      + L+ + CD IQ
Sbjct: 658 NEVKLDRSFIASLHKSDRAYKIVSSTIELAHALGLVVVAEGVEDRETYQVLSDLECDRIQ 717

Query: 937 DSHVASPLGFNSILKLLKERFPL 959
              ++ P+  N +L LL  R  +
Sbjct: 718 GYLISKPVPGNDVLPLLGSRLQI 740


>gi|163745584|ref|ZP_02152944.1| diguanylate cyclase, putative [Oceanibulbus indolifex HEL-45]
 gi|161382402|gb|EDQ06811.1| diguanylate cyclase, putative [Oceanibulbus indolifex HEL-45]
          Length = 513

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 192/435 (44%), Gaps = 10/435 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D ++G+  R +F +    +   +     L  T   I ++++ KI +  G    D +   
Sbjct: 70  RDAVSGMLQRSTFEELTEQVFQRAKAQGRLSAT-FFISLEEFDKITERYGHGTADSIARQ 128

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREI 652
              R+  +L+  D + ++   RF I +      +       A  ++  +  PI++    +
Sbjct: 129 SGERLISVLRDDDNIGKMGEARFAICMAPVRQLDLELCIQLAGRLQAVLEEPISVDGVTV 188

Query: 653 TVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKE 709
            ++AS+GF   T +  +  +  L  A  A+  A+ RG + + +F     R       ++E
Sbjct: 189 YLSASVGFCLNTRAPGVDGAAWLAAAATALRTAQRRGPSSIRAFSDQMRRDTESRTELRE 248

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D+  A++  ++   + P I     +I G EAL +W+HP  G I  S+F+   EE  +++ 
Sbjct: 249 DVVQALDGGQIQPWFQPQISTDTGQITGFEALARWNHPVRGMIPPSDFLPAIEEAGLLER 308

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   M+      + +W       P  + +N A  +L + +L + +   + +   +P R+ 
Sbjct: 309 LAEVMMYHSFAALKAWDSSGTEVP-QVGVNFAGSELANPQLIDKISWELDRFELTPDRLA 367

Query: 830 LSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   E+VV   P+      +  L K+G  + LDDFGT  + ++ +       +K + S +
Sbjct: 368 VEVLETVVASAPDDVITRNINALGKLGCRIDLDDFGTGQASIASIRRFSVSRIKIDRSFV 427

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   +  ++ +I+ MA+ +    +A+ +    +   L ++GCD++Q   +A P+ F
Sbjct: 428 MKADRDPDQQRMIGAILTMAERLGVETLAEGVETVGEHVLLAQLGCDHVQGFGIARPMPF 487

Query: 947 NSILKLLKERFPLVK 961
              L  +      ++
Sbjct: 488 EQTLDWISRHNAKLQ 502


>gi|117621295|ref|YP_855610.1| sensory box/GGDEF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562702|gb|ABK39650.1| sensory box/GGDEF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 738

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 137/782 (17%), Positives = 286/782 (36%), Gaps = 84/782 (10%)

Query: 189 TLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSG 248
           T     +  +     I+  +F+ +         +++ W    Y+     F          
Sbjct: 7   TTLVVALCALTLCNIIYQAVFHTLTSDGHHHSEYSIIWAPNAYLI----FFLWAFGRYIH 62

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHW---NRWHAKVGYITFSGIACIAILFCMSFYYPM 305
           + + W +     +  +L+ F          + W + + Y   + +  I  LF ++F+   
Sbjct: 63  KSISWISIFMTVIGFNLLYFSSQNYPIGMGSYWSSLIMYAVNNTVFIIGFLFVLNFWKFS 122

Query: 306 VTAS-----IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK 360
            +       +              FI    +  +  +   +   +         +     
Sbjct: 123 ASLFSKDNEVLSFLWLHFGGALCTFIASISVLVFPSSSEKLVYQLFAANLMAFTFFTSYL 182

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            L    I       ++   +L+  + I   +   +F        E  +L ++ S   ++ 
Sbjct: 183 FLSEQFIPDNKNIKMMNFSLLVSLSSIVFYIVNEFFH---TLSKETFALILMASFICLFI 239

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
                 R+     ++ +                              LD  +        
Sbjct: 240 RSRPYVRIVVAALVSALF-----------------------AAVNVALDLSL-------- 268

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
           Y+F +      F+ + I    +                I   +K+++ +  +   D LTG
Sbjct: 269 YDFIL------FYSICISTSIILIMRKKETHI------IHALQKTVDELRKSKLIDPLTG 316

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR+ F + L+        + N    V   D+DK+K+IND +G AVGD VL   + R+ 
Sbjct: 317 LLNREGFKNILSE-----KCNSNKEFLVAYADLDKFKEINDFMGHAVGDLVLKISSARMS 371

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            +L     +ARL G+ F  ++  E +          + + I  PI L ER  ++  SIG 
Sbjct: 372 SILGMNSPVARLGGDEFAFVIPGEKS--MALQRCQELIEKITQPIALGERTFSIGISIGV 429

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVEN 717
           +S+        E+L  A++AMY AK         F              ++    + +  
Sbjct: 430 SSYPHQATALEELLDKADMAMYAAKCSHDRAPVYFEEKMDCRKSHETFYLQRTFNIDLML 489

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E Y V+ P+  +    I   EAL++  HP    +S+ + +  AE+   + A+   M++ 
Sbjct: 490 GECYAVFQPLHDIQLGGIKSFEALLR--HPN---LSTVDIIQWAEDYGHMNALFELMVQC 544

Query: 778 IARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQA-LISKTLYSPSRIKLSFSES 835
            A  I             + +NI+   +  +  +   +   +I +     + + L  +ES
Sbjct: 545 AANFI-------LTSGYPVTVNISPSQIIFNGGMIRNIMEKVIIEYKLPRNTLNLEVTES 597

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-- 893
           V +         +G+++++G+ + LDDFGT  +  S L    FD +K + +L++G  +  
Sbjct: 598 VPIVEQSVFINAIGQIKELGVEVYLDDFGTGYAFFSTLSMGAFDAIKIDRNLVSGINKSL 657

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
               +L SI+  A      +IA+ +  E ++  L  +G  Y+Q  + + P+  +++L  +
Sbjct: 658 SMQRLLNSILTYANEAGMYVIAEGVEEEDELWVLKNLGVKYVQGYYFSKPMREDTMLIYI 717

Query: 954 KE 955
           + 
Sbjct: 718 ES 719


>gi|163785380|ref|ZP_02180007.1| hypothetical protein HG1285_09841 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879352|gb|EDP73229.1| hypothetical protein HG1285_09841 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 329

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 150/338 (44%), Gaps = 17/338 (5%)

Query: 623 SENNSLKIADFAIAMRKSIAM--PINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           +  N   +      ++K +       + +  I V    G A +        ++ +NA ++
Sbjct: 2   NLKNKEDLFVIVERLKKILDKGTIFKVDDISINVQFHGGIAVYPDDGQDFKQLFQNASIS 61

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +  AK  G N ++ F  +  +  ++ I  ++ +  A + +     Y P    + +EI G 
Sbjct: 62  LKDAKEEGINQIKLFNKNIEKKIKLKILIEDLIHKATKENLFVFHYQPYFDSITKEIKGF 121

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++           +EF+ + E+   +     + L+ ++  I  W+         I I
Sbjct: 122 EALVRIKDKDGKIHYPNEFIDLLEKSIYLDDFRNWALKEVSEKIKKWKK-------PISI 174

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK-IGIS 857
           NI++K   + +    +     +    P+ + L  +E + M  PE+S  ++  L+K   I 
Sbjct: 175 NISAKTFKNTDFPAEVIKYAKRL---PASLILEITERIYMDEPEKSEKIIRDLKKCKNIK 231

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + +DDFGT  S LSYL  I  D +K + S +      +K  A++ +II +AK +    +A
Sbjct: 232 IAIDDFGTGYSSLSYLKDISADILKIDISFVRAMIKDKKAKAVVEAIITLAKALGMETLA 291

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + +  E+    L +MG DYIQ  + A PL    I KLL
Sbjct: 292 EGVETEVQYNILKKMGVDYIQGFYFAKPLPEEEIEKLL 329


>gi|329897414|ref|ZP_08272069.1| hypothetical protein IMCC3088_2767 [gamma proteobacterium IMCC3088]
 gi|328921174|gb|EGG28576.1| hypothetical protein IMCC3088_2767 [gamma proteobacterium IMCC3088]
          Length = 452

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 6/347 (1%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
            NA  D+LTG+PNR +F   ++ IL  +  D++    V+V D++ +K +ND LG  VGD 
Sbjct: 110 YNALHDDLTGLPNRVAFRSEMSQILAHA-RDESHHFAVLVADLNGFKGVNDTLGHFVGDG 168

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           VL  L+RR   +L+  D +AR  G+ F  IL    + +   + A  +  +      + E 
Sbjct: 169 VLEELSRRFKTVLRSDDFVARWGGDEFAFILP-LTDRIGAEEVAEKLISTTDDYFCVEEH 227

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIK 708
           EI++  S+G A +        E+L+ A+ A+Y AK + G++V  +        + R+M+ 
Sbjct: 228 EISIGISMGLAMFPLHADDGGELLRMADTALYAAKAKAGSNVALYDPASDDNATQRLMMN 287

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L LA+   EL L Y PII +  + +  +EAL++W HP  G ++  EFM +AE   +I+
Sbjct: 288 KNLQLALARDELELFYQPIINMQTQRVTSVEALLRWHHPDLGLLNPDEFMRLAEMSGLIR 347

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  + +++ AR +  WR +       + IN++  D+ D  +   ++ ++ +    P  +
Sbjct: 348 QVTRWTMDQAARQLRLWRMRGLNLD--VSINLSISDIQDLNVTAQLRNVLDRLNLEPGAL 405

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L  +E+ +M +P ++   L RL K+G  + +DDFGT  + LSYL  
Sbjct: 406 TLEVTETSMMTDPNKALESLQRLDKMGAMIAIDDFGTGFASLSYLRR 452


>gi|16761052|ref|NP_456669.1| hypothetical protein STY2336 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141251|ref|NP_804593.1| hypothetical protein t0749 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213647019|ref|ZP_03377072.1| hypothetical protein SentesTy_06746 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|25513186|pir||AH0770 probable membrane protein STY2336 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503350|emb|CAD02486.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136877|gb|AAO68442.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 996

 Score =  308 bits (790), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/619 (16%), Positives = 220/619 (35%), Gaps = 25/619 (4%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 387 VVWALLAVSLV--------RHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITQANEAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-NRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNLLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +     R   +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFRHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G     L     +P
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGR---DLQLFNLLP 910

Query: 878 F---DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G 
Sbjct: 911 PHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGV 970

Query: 933 DYIQDSHVASPLGFNSILK 951
           D I    +A     + +L 
Sbjct: 971 DLIYGDTIAEAQPLDLLLN 989



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNQPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANEALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|225569982|ref|ZP_03779007.1| hypothetical protein CLOHYLEM_06077 [Clostridium hylemonae DSM
           15053]
 gi|225161452|gb|EEG74071.1| hypothetical protein CLOHYLEM_06077 [Clostridium hylemonae DSM
           15053]
          Length = 717

 Score =  308 bits (790), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/502 (20%), Positives = 206/502 (41%), Gaps = 39/502 (7%)

Query: 470 SFVGYRRGRLQYEFRVRAA-------------DNQFHWMIIRIRPMSNSNGDILRYIG-- 514
           S +   +     E+R+ AA             + +    +    P  N++ ++L  +   
Sbjct: 230 SSLSKEKNHDSEEYRILAAQNVDSLLAMPLVLEGEVIGFLGVDNPTVNADVEVLLRLTPE 289

Query: 515 -IANDITEQKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
            I NDI  +K+ +     N+ + D+LTG+ NR     +   +++           ++ +D
Sbjct: 290 FIVNDI--RKRQIWQEAKNSGYIDDLTGLGNR----KKSRQMVEWLEQQYQEEFGIVTVD 343

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID  + IN+  G   GD +L  + + + +     D + R+  + F    +    S    +
Sbjct: 344 IDSLRNINNAYGYEWGDHMLRYVAQTLIKCF--GDYVYRVGDDEFVAFCLDIRKSEFEEE 401

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
                 + +       E+   +  +IG + +   +      +  A   M+  K +     
Sbjct: 402 V-----RKLQKIAKWDEQ---LQIAIGSSWF-EGESDIDYQITVANEKMHINKVKNYKRG 452

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
              + S  +   V + E+L   +E     +   P I L +  I G EALI+        I
Sbjct: 453 TVGQKSIQKYRGV-LAENLQREIETGRFVVYLQPQINLKNNRIGGAEALIRRLDEHGNII 511

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             + F+   E   +I+ I+ ++LER+ R +  W  +     + I +N +   ++++E+ E
Sbjct: 512 FPNSFVSRYEGDEIIRYIDFYVLERVCRILKQW-KEKGRQDVGIAVNFSRVTMMEDEVVE 570

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            M+A+  K    P +I +  +ES+ M   +  + LL  ++K G  ++LDDFG++ S L+ 
Sbjct: 571 KMRAVCRKFGVDPGQITIEVTESIGMLERDTLKELLDDIQKSGFRISLDDFGSRYSDLAL 630

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETT-IIAKDIYGEIDIKELTR 929
           L    F+ +K + SL+       K   I   ++ M   ++ T  +A+ I      + L  
Sbjct: 631 LSLADFNEIKLDKSLIDRLEIGGKPRVIAEYVLRMCMELKLTHSVAEGIETVSQREILKN 690

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
            GC+  Q      P+  +    
Sbjct: 691 FGCELGQGYLFDKPMPVDEFEN 712


>gi|306520343|ref|ZP_07406690.1| putative signaling protein [Clostridium difficile QCD-32g58]
          Length = 469

 Score =  308 bits (790), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 181/401 (45%), Gaps = 18/401 (4%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A+ D +TG  N + F   +T +L    T  N +  +++ DIDK+K IND+ G   G+ +L
Sbjct: 80  AYTDFVTGYSNWRKFELDVTNLLK--KTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLIL 137

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +   + EL    +  AR+S + F I+L        I                +   E+
Sbjct: 138 KDIADTLNELTNINETFARVSADNFNILLTYNKKEDIINIIKK----------IIANNEL 187

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            V  S G        ++ S     A LA    K+    +   F         +   I+++
Sbjct: 188 -VNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFNDKLREKLLLEDKIEKE 246

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E+ +  +   P   +  ++  G EAL++W + +   I   +F+ I E+   I+ I
Sbjct: 247 MEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPGDFIPIFEKNGFIRKI 306

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           ++++LE+  ++I S  D+  + P+ I +N +  D L  +  E +  +  +     S I++
Sbjct: 307 DMYILEQACKEIRSLFDK-GISPLPISVNFSRVDFLKKDFIENIVNICDRYKIPYSLIEI 365

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS-LMT 889
             +ES + G+ +    +   L+ IG  + +DDFG+  S ++ L  IP + +K +    + 
Sbjct: 366 EITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVD 425

Query: 890 GST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
               +K   +++SI+ + K +   ++A+ I     I+ L +
Sbjct: 426 DKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKK 466


>gi|317054548|ref|YP_004118573.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pantoea sp.
           At-9b]
 gi|316952543|gb|ADU72017.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pantoea sp.
           At-9b]
          Length = 596

 Score =  308 bits (790), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 193/427 (45%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D +TG+PNRQ  +  L ++     T       +  ID+ +  ++   LG+A  + +L 
Sbjct: 165 YTDPVTGLPNRQRLIRDLQSLSSSGDTAPRRLVLIDCIDMPRAYELARSLGMAPVEGLLK 224

Query: 594 SLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
            +   +   L+  +  +L  ++  RF ++   ++        A    + I+  +      
Sbjct: 225 DVATLLPLRLRPGNDALLYTIATGRFAVLTKHDSRLSAAWVAAR--LEGISADMG-EGLS 281

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKED 710
           + +T   G   +   ++++ E+L+ A  A++ A          S      R++   +  D
Sbjct: 282 VDLTTHAGETDFIPGRLSAHEILRRAVSALHEAICRSVPAMSFSLASDERRTEDFTLVND 341

Query: 711 LCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           L  A+++  ELYLVY P I L   E +GLEALI+W HP  G +S +EF+ + E   +++ 
Sbjct: 342 LASALKHDRELYLVYQPKICLQSGEPLGLEALIRWSHPLRGELSPAEFIPLVEPTTLMEE 401

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  +++      +   ++ A   PI   +N++ +D       + ++ L+       S + 
Sbjct: 402 LTEWVVFHAIDRLKRLKNSAIQLPIT--VNVSVRDFSKKGFADWLEKLMIDARLPTSLLG 459

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+  +     +   L  L+  G  ++LDDFGT  S +SYL  +P D +K + S++ 
Sbjct: 460 IECLETERIIESPAAIDGLEMLKLRGFGISLDDFGTGYSNISYLRRMPLDVIKLDRSIIN 519

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G +       I +SII M K ++  ++A+ +     ++ L   GCD  Q    + PL   
Sbjct: 520 GLSTDTASRIITKSIIAMLKELDYMVLAEGVENRETLEALKEFGCDQAQGYFYSHPLREE 579

Query: 948 SILKLLK 954
            +   L 
Sbjct: 580 ELDNWLA 586


>gi|291531913|emb|CBK97498.1| FOG: EAL domain [Eubacterium siraeum 70/3]
          Length = 557

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 178/424 (41%), Gaps = 13/424 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D+  GIPN + F   +  + +     D     V+  +I     +N + G     +++  
Sbjct: 138 RDS--GIPNSKGFRAFIEEVKENGVLSD---YAVIRANIKGCNTLNTIFGYQATTEIIQR 192

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
             R + + +   +I +R   + F +++   +    + +FA      +       +    +
Sbjct: 193 FARALNKTMYSDEICSRSGSDNFCLMVKKSHLKAHLKNFAKT---PVNFYYGKEKTVYEI 249

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLC 712
               G      S      +L  AE  +  AK R  G          +      +++  + 
Sbjct: 250 ALRAGIVMLDDSTDDIDTILARAETCIDIAKRRADGDFVYYDLDTINREKQLTLLENGMP 309

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+ + E  + + P +R+    +VG EALI+W       IS ++F+ IAE    I  +++
Sbjct: 310 QALADGEFVVYFQPKVRVDTRTLVGAEALIRWKR-DGKIISPADFIPIAERTGFIMKLDM 368

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           F+LE     I  W++      + + +N +   L    L E +  +I++    P  +++ F
Sbjct: 369 FVLEHTCAMIKQWQESGKRT-VPVSVNFSKIHLRFPHLAEKIMNVINRYGIEPHNLEVEF 427

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGS 891
           +E+    +    +  +  L+  G+ +++DDFGT  S L+ L  + FD +K + SL     
Sbjct: 428 TETAYTDDFNAIKQAIIDLKSYGLMVSMDDFGTGYSSLALLKDLDFDILKLDKSLAGADD 487

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +   +L +I+ MA+ +  T + + +  +  +  L  MGC+ IQ  +   PL  +    
Sbjct: 488 DARGQVVLENILHMAQELSMTTVCEGVEDKNIVDNLRNMGCNIIQGYYFDKPLPESEFAS 547

Query: 952 LLKE 955
            L+ 
Sbjct: 548 RLES 551


>gi|307721582|ref|YP_003892722.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979675|gb|ADN09710.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 830

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 179/428 (41%), Gaps = 28/428 (6%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++S + I   A+ D LTG+PNR S L R+   +           TV +++ID +  IND 
Sbjct: 419 QRSADFIYKQAYFDKLTGVPNRLSLLQRIDECVGE---------TVFLVNIDDFTTINDF 469

Query: 583 LGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            G A+GD VLV +++ + E        L +L  + F +I   E     I      +   I
Sbjct: 470 YGHAIGDIVLVKMSKYLQEFTENEGMELFKLPSDEFAVISNVEQIYQDIERIIKKLIIFI 529

Query: 642 AM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--- 697
                 + ++ I ++ +I  A            L NA++ +  AK     ++   +    
Sbjct: 530 EKKEFLVNDQAIHISVTISAAYINEKNTG----LANADMVLKAAKKAHKPYLVFNKSLEL 585

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           S      + +  ++  A+E+ ++   Y PI  +   E+   EAL++        +S   F
Sbjct: 586 SKKYESNLKMANEIKRAIESDDIIPYYQPIFNIKTGEVEKYEALVRLRKSDGKILSPYFF 645

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I+E++ +   I   M+E+                +   IN++  D+   ++ E +   
Sbjct: 646 LAISEKIKLYPRITEIMVEKTFAFFAK-------NGLKFSINLSFSDIFSEKMREFIFEK 698

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +      ++ +   E+    N +        + + G  + +DDFG+  +   Y+  I 
Sbjct: 699 IREYNI-AKQLTIEILETQEYSNEDIVSEFTKEVYESGAYIAIDDFGSGFANFQYMTNIS 757

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +GSL+    +      I+ +I+  AK +   ++A+ ++ +     +  +G +Y 
Sbjct: 758 SDYMKIDGSLIKNIHQDQNSRLIVETIVIFAKKLGKKVVAEFVHSKEVFDVIKEIGIEYA 817

Query: 936 QDSHVASP 943
           Q  ++  P
Sbjct: 818 QGYYLGEP 825


>gi|160945728|ref|ZP_02092954.1| hypothetical protein FAEPRAM212_03260 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443459|gb|EDP20464.1| hypothetical protein FAEPRAM212_03260 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1011

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 202/549 (36%), Gaps = 48/549 (8%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +       ++       V  T +  ++LG     M G   +            F  +L  
Sbjct: 471 MASVEIGGYELRTDTGSVFVTDNFFSLLGKP--EMQGEPLS---------VRRFEEVLKG 519

Query: 471 FVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                      E      ++  D    ++++R     ++       IG+A D+T      
Sbjct: 520 IREKNPCDHTAEGDELLTIQQPDG-VRYIMLRSTIEGHAK------IGLAEDVTAAVLER 572

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + I      D LTG+ NRQ+F    T +             +M++D+D  K IND  G  
Sbjct: 573 KRIEHERDHDILTGLYNRQAFNRVCTELFAAPERMG--VAALMMMDLDNLKHINDTYGHD 630

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  +    + + +      + ARLSG+ F ++     +   + +    + K++   + 
Sbjct: 631 WGDQYIRRTGQCLRDNTPAGTVCARLSGDEFLVLFHGYRSRDAVREKIDCLTKAMQQSVA 690

Query: 647 L--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702
           L      + ++ S G A +         + K A+ AMY  KH   G        V +  +
Sbjct: 691 LLPSGNALHISLSGGIAWYPDDGQDWETLKKYADFAMYQVKHSEKGRVEEFDIGVYNREA 750

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                + +    + N++++  + PI       +V  EAL++ D P     S +  M +A 
Sbjct: 751 YAERTRREFRQLLSNAQVFYCFQPIFSARSGRVVAYEALMRSDLPT--LRSPATIMKLAR 808

Query: 763 ELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILIN-IASKDLLDNELCEGMQALISK 820
           E   +  I      +      S     +      + +N IAS  L   +  + + +   +
Sbjct: 809 EQGALYEIERITFTKALETFDSLCRAGSVSGDAMLFVNSIASTCLTQAD-VDYIDSRWHE 867

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLR----KIGISLTLDDFGTKCSLLSYLGYI 876
                 R+ +  +E   +      R  L R R      G+   LDD+G+  S  + L  +
Sbjct: 868 L---RRRMVIEITEEEAID-----REALERKRNDPGSSGM-FALDDYGSGYSNENSLLEL 918

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               +K + +++ G      +  ILR+++  A      I+A+ +    +++ +  +G D 
Sbjct: 919 APRFIKVDIAIIRGIDTSPDKQQILRNVVAYAHPRSMKIVAEGVETAAELRTVIELGADL 978

Query: 935 IQDSHVASP 943
           +Q   +A P
Sbjct: 979 LQGYFLARP 987


>gi|257470043|ref|ZP_05634135.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
          Length = 539

 Score =  308 bits (789), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 199/451 (44%), Gaps = 40/451 (8%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  + +   A+ D +  I NR         ++  +      + T+  IDI  + + N++ 
Sbjct: 110 KYRKQMERIAYYDPIFNIGNRLKCQRDSDILIAYNKKR---KFTIFCIDICSFSRYNELF 166

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            I  GD++L   ++R+ +L    D   R++G+ F  I  S+    +I      +R+ +  
Sbjct: 167 NIETGDEILKETSKRLVKLF--GDYTYRINGDVFLGISFSKKTHDEIV---GNIREKLTE 221

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFR 701
           PI +   +  +  +IG   +     TS ++L+  ++++ +AK        +    +    
Sbjct: 222 PIYVNGLKFILKVNIGICIYPIHGNTSEKLLEKVQISLRYAKNYQMAKAVMYDETIDDLI 281

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S    I   L   + N EL + Y PI  +        EALI+      G   + + + IA
Sbjct: 282 SKEKNILRLLEEKLVNGELEVWYQPIWNIKKNTFTSAEALIRLKDGNGGYFPAIQVIEIA 341

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +++ I  ++LE + + +  +     +    I +N + +  L  +  + +  +I+K 
Sbjct: 342 EKNGVVEKIGNYVLEHVCKFMRDFGRDFGLDS--IGVNTSIQQFLVEDCVDNILKIINKN 399

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP+ I L  +E+++M + ++   ++  L+K  IS+ LDDFG   S L+YL  +P D +
Sbjct: 400 KISPNNISLEITETLLMSSLDKMNSIILELKKSDISIALDDFGKGYSSLNYLSNLPVDVI 459

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIET-------------TIIAKDIYGEIDIKE 926
           K + SL+     + K++ IL+SII MA+                   +A           
Sbjct: 460 KVDKSLVKNIVTSPKQLLILKSIIEMAEINNMKVVVEGIEEEEEQKKVA----------- 508

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               G DYIQ  + A P+    +++LL+ + 
Sbjct: 509 --SFGVDYIQGFYYAKPMPEKDLIELLEAKN 537


>gi|317064267|ref|ZP_07928752.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689943|gb|EFS26778.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium
           ulcerans ATCC 49185]
          Length = 607

 Score =  308 bits (789), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 199/451 (44%), Gaps = 40/451 (8%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K  + +   A+ D +  I NR         ++  +      + T+  IDI  + + N++ 
Sbjct: 178 KYRKQMERIAYYDPIFNIGNRLKCQRDSDILIAYNKKR---KFTIFCIDICSFSRYNELF 234

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            I  GD++L   ++R+ +L    D   R++G+ F  I  S+    +I      +R+ +  
Sbjct: 235 NIETGDEILKETSKRLVKLF--GDYTYRINGDVFLGISFSKKTHDEIV---GNIREKLTE 289

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFR 701
           PI +   +  +  +IG   +     TS ++L+  ++++ +AK        +    +    
Sbjct: 290 PIYVNGLKFILKVNIGICIYPIHGNTSEKLLEKVQISLRYAKNYQMAKAVMYDETIDDLI 349

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           S    I   L   + N EL + Y PI  +        EALI+      G   + + + IA
Sbjct: 350 SKEKNILRLLEEKLVNGELEVWYQPIWNIKKNTFTSAEALIRLKDGNGGYFPAIQVIEIA 409

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +++ I  ++LE + + +  +     +    I +N + +  L  +  + +  +I+K 
Sbjct: 410 EKNGVVEKIGNYVLEHVCKFMRDFGRDFGLDS--IGVNTSIQQFLVEDCVDNILKIINKN 467

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP+ I L  +E+++M + ++   ++  L+K  IS+ LDDFG   S L+YL  +P D +
Sbjct: 468 KISPNNISLEITETLLMSSLDKMNSIILELKKSDISIALDDFGKGYSSLNYLSNLPVDVI 527

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIET-------------TIIAKDIYGEIDIKE 926
           K + SL+     + K++ IL+SII MA+                   +A           
Sbjct: 528 KVDKSLVKNIVTSPKQLLILKSIIEMAEINNMKVVVEGIEEEEEQKKVA----------- 576

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               G DYIQ  + A P+    +++LL+ + 
Sbjct: 577 --SFGVDYIQGFYYAKPMPEKDLIELLEAKN 605



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 94/295 (31%), Gaps = 30/295 (10%)

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R+   ++           +    I+ +  I+ + G    ++   ++++ I E +K   I+
Sbjct: 1   RICKRVNWKTEKRRETFALFYFVIEDFNSISQLAGEEQKNEFFRNISKIIEEYIKSEYII 60

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
             +  + F I +        +AD    +   +   + L ++++ +     +      +  
Sbjct: 61  GHIGESNFVIAVFENMEEQAMADITKGLSLELIWKVRLNDKKVFLNTYYRYLKVEKEEEN 120

Query: 670 SSEMLKNAELAMYHAKH----------------RGGNHVESFRVSSFRSDRVMIKEDLCL 713
             E ++      Y  K                  G ++V      +     + +   L  
Sbjct: 121 PLECIRKIVEEYYSEKTKKSPITLLTKKFNELLEGKSNVVFDEADNQE--MLELSMVLNK 178

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI--- 770
             +  E    Y PI  + +      ++ I   + K    +   F +          +   
Sbjct: 179 YRKQMERIAYYDPIFNIGNRLKCQRDSDILIAYNKKRKFTI--FCIDICSFSRYNELFNI 236

Query: 771 --NLFMLERIARDIISW---RDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
                +L+  ++ ++             +F+ I+ + K    +E+   ++  +++
Sbjct: 237 ETGDEILKETSKRLVKLFGDYTYRINGDVFLGISFSKKT--HDEIVGNIREKLTE 289


>gi|161502721|ref|YP_001569833.1| hypothetical protein SARI_00771 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864068|gb|ABX20691.1| hypothetical protein SARI_00771 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 996

 Score =  308 bits (789), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 106/616 (17%), Positives = 220/616 (35%), Gaps = 19/616 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      ++ +
Sbjct: 387 VVWALLAVSLV--------RHKDNQPLYFIAQIEDINDLKQSEQENQRLMERITLANEAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G    +  G     +  I   D
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVDMNITFMNPIAEKMSGWRQENALGVPLLTVLRITSGD 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEMVLHCRNGGSYDIHYSITPLSTLDGDNIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  RL   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKRLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSACFTVTRLINAI 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G + +  +     
Sbjct: 677 NDYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRSRLTVYEPQDV 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  + +     E        ++    +   +    F
Sbjct: 737 LTPSRGMMPLEEQWRMIKTNHLLMLARNVVAPRTPEATSFWLVSLRLWTSEGDVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADPALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLCSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
              +   P  + L     V++   E +   L +LR+ G  + L   G    L + L    
Sbjct: 854 REHSPLPPRLLHLIIPADVIVKQAETAVATLQKLRQRGCQIILSQVGRDLHLFNLLNPHI 913

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +  +  L+T   E      +   I   A+ ++   +A  +     +  L+ +G D I
Sbjct: 914 ADYLLLDSDLITNIHESLMDEMLASIIQGHAQRLDIKTLAGPVQNSQVLDTLSSIGVDLI 973

Query: 936 QDSHVASPLGFNSILK 951
               +A     + +L 
Sbjct: 974 YGDAIAETQPLDLLLN 989



 Score = 85.0 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 83/257 (32%), Gaps = 19/257 (7%)

Query: 323 TYFIIYHGMKGYERAVLLIPAWILIFIWFIGL---WMAITKRLDNDIIQPALVGGLVLIV 379
              +++  ++       LI    +I +  +      +  T ++D  +  P L   ++L+ 
Sbjct: 220 IVLLMWSAVRLPRMEAFLIFLATVIMVSLMLANDPTLLATPKIDVMVNMPWLPFLMILLP 279

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
             +   V+            I     R   A+  S   +         +     ++  LG
Sbjct: 280 ANMMTMVMYAFRTERKH---ITESEARFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLG 336

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   +      +       D +N    L+  V         E R      +  W ++ +
Sbjct: 337 YSQDEL--RAMTFQQLTWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRSGEVVWALLAV 394

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDL 557
             + + +   L +I    DI + K+S +       +  +T + N   F   +RL   LD 
Sbjct: 395 SLVRHKDNQPLYFIAQIEDINDLKQSEQENQRLMER--IT-LANEALFQEKERLHITLDS 451

Query: 558 SATDDNLRPTVMVIDID 574
                     V+ ID+D
Sbjct: 452 IGE------AVVCIDVD 462


>gi|295103196|emb|CBL00740.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1011

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 201/549 (36%), Gaps = 48/549 (8%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +       ++       V  T +  ++LG     M G   +            F  +L  
Sbjct: 471 MASVEIGGYELRTDTGSVFVTDNFFSLLGKP--EMQGEPLS---------VRRFEEVLKG 519

Query: 471 FVGYRRGRLQYE----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                      E      ++  D    ++++R     ++       IG+A D+T      
Sbjct: 520 IREKNPCDHTAEGDELLTIQQPDG-VRYIMLRSTIEGHAK------IGLAEDVTAAVLER 572

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + I      D LTG+ NRQ+F    T +             +M++D+D  K IND  G  
Sbjct: 573 KRIEHERDHDILTGLYNRQAFNRVCTELFAAPERMG--VAALMMMDLDNLKHINDTYGHD 630

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD  +    + + +      + ARLSG+ F ++     +   + +    + K++   + 
Sbjct: 631 WGDQYIRRTGQCLRDNTPAGTVCARLSGDEFLVLFHGYRSRDAVREKIDCLTKAMQQSVA 690

Query: 647 L--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRS 702
           L      + ++ S G A +         + K A+ AMY  KH   G        V +  +
Sbjct: 691 LLPSGNALHISLSGGIAWYPDDGQDWETLKKYADFAMYQVKHSEKGRVEEFDIGVYNREA 750

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                + +    + N++++  + PI       +V  EAL++ D P     S +  M +A 
Sbjct: 751 YAERTRREFRQLLSNAQVFYCFQPIFSARSGRVVAYEALMRSDLPT--LRSPATIMKLAR 808

Query: 763 ELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILIN-IASKDLLDNELCEGMQALISK 820
           E   +  I      +      S     +      + +N IAS  L   +  + + +   +
Sbjct: 809 EQGALYEIERLTFTKALETFDSLCRAGSVSGDAMLFVNSIASTCLTQAD-VDYIDSRWHE 867

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK----IGISLTLDDFGTKCSLLSYLGYI 876
                 R+ +  +E   +         L R R      G+   LDD+G+  S  + L  +
Sbjct: 868 L---RRRMVIEITEEEAIDY-----EALERKRDDPGSSGM-FALDDYGSGYSNENTLLQL 918

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
               VK + +++ G      +  ILR+++  A      I+A+ +    +++ +  +G D 
Sbjct: 919 APRFVKVDITIIRGIDTSPDKQQILRNMVAYAHPRSMKIVAEGVETAAELRTVIELGADL 978

Query: 935 IQDSHVASP 943
           +Q   +A P
Sbjct: 979 LQGYFLARP 987


>gi|119945535|ref|YP_943215.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119864139|gb|ABM03616.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 763

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 205/544 (37%), Gaps = 40/544 (7%)

Query: 402 SDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              E+  LA      + + +   D     V          G +   +       +  +  
Sbjct: 182 RADEKLKLAANIFTHTLECIIISDENGYIVEANKASCDTTGYSKEELLQSH---VSILES 238

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  +   T L      +    Q +   R  + + H+    +  +       L  I    D
Sbjct: 239 SQYEKIETAL-----QKDKSWQGDMSYRTKNGEHHYCWSEMYVIELEEKGTLCRISSFID 293

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           + +  +    I   +  D LTG+ NR +  +RL  ++  ++ +  +   V+++DI+ +K 
Sbjct: 294 LKQSTRVEPKIQFLSKHDPLTGVFNRIALFNRLEQVIARASFNQRM-MAVLLVDINGFKA 352

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN   G   GD  L  +  R+   +   D +AR  G+ F II+    N   +AD A  + 
Sbjct: 353 INKQHGHNAGDMALQQIAERLKSCVSEKDTVARFGGDEFVIIIDELLNEQDVADVAQNIT 412

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK------------- 685
                  ++      ++A+IG A +         +L NAE AM   K             
Sbjct: 413 AQFERYFDIDHSSAHLSATIGIALYPDDGTDIDTLLGNAEKAMQRGKSHINTTKESDSVT 472

Query: 686 ------HRGG-------NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
                   G         +  + +++ +   +V  KE L  AV   +  L Y P   L  
Sbjct: 473 ATAPSLKSGKLSAQTTTYYFYTKKLTQYSRQQVKFKEALTQAVAQDQFELYYLPQYDLSK 532

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            +IV LEAL+ W+HP+ G + S  F+ +AE   +   I L M+ + A   + W+  A   
Sbjct: 533 RQIVALEALLCWNHPQRGVLHSDSFISLAEHYGLAVQIGLIMIRKAALQAVIWQKAAINF 592

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I IN+    L    L   +Q ++ +T  S   ++    E     +       +  + 
Sbjct: 593 G-RIAINLTEVQLSQFSLIGDLQTILLETKCSIEWLEFEIDEVTFKSDNPTVYENILNIS 651

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIET 911
           K+G++LT+D FG    L      +  D  K       GS      A+    + +++++  
Sbjct: 652 KMGMALTVDKFGADRPLFRLFEQLTIDKFKIAPHFTDGSVNFVNRALQDGFLFLSRSLGV 711

Query: 912 TIIA 915
           T++A
Sbjct: 712 TVVA 715



 Score = 46.1 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 387 IQHVLATGYFSQGIFSDG--ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
           I+  +      Q   ++    R +     +    + +++           A++L +   +
Sbjct: 51  IELEMQNEELKQARITEKLYYRYTELFEFAPIAYFSFNLKGVVNQVNLRGASLLDIERAN 110

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G    +  Y+   DRD F   L        G   +E  +        W+ I       
Sbjct: 111 LVGK--QFSNYLTPQDRDKFNRCLAKAFAGD-GIQSFEV-LAQIGKHKRWLNIEANLGIT 166

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAF 534
                   +    DIT++K++ E +   A 
Sbjct: 167 E----TDCLAAVIDITDRKRADEKLKLAAN 192


>gi|254458448|ref|ZP_05071873.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207084756|gb|EDZ62043.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 565

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 198/430 (46%), Gaps = 30/430 (6%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   E +      D LT + NR+S L  L  +          RP +++IDID +K IND
Sbjct: 156 LRLQNEKLYYQLHTDRLTSLKNRKSLLRDLKKV---------DRPILLIIDIDSFKSIND 206

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           + G  +G+ VL ++++ +   +K  D  L R+  ++F ++  +E +  K  +   ++   
Sbjct: 207 LYGEHIGNLVLDAVSKILKNFVKHLDCDLYRIGADQFALMKEAELDKRKCEETVKSILNV 266

Query: 641 I-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH---RGGNHVESFR 696
           I + P+N+++ +I +  ++          T       A++A+  AK    +   + + + 
Sbjct: 267 INSEPLNIVDYDIVIRVNVTIGVSHEKVNTLES----ADMALKKAKTDRLQYLIYSDEYS 322

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +   + V   + +  A++ +++ + Y P++   +E+IV  EAL++ +           
Sbjct: 323 MDAEYKNDVKWTKIIEKAIKLNKVIVYYQPVVN-SNEKIVKYEALMRIED-DGIIYPPML 380

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IA+++     +   ++++        R       I I IN++ +D+++ E+ + ++ 
Sbjct: 381 FLDIAKKVKFYPQLTKIVIQKAFEQAQEKR-------ISININLSIEDVVNLEIIKFIED 433

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +SK   S   I     ES  + +  +    +  ++++G  + +DDFG+  S  +YL   
Sbjct: 434 ELSKRDISY-LITFEILESESITDYRKVIDFIDNVKQLGCKIAIDDFGSGYSNFAYLLKF 492

Query: 877 PFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +GSL+        + L  ++I   A ++    +A+ ++ +   K L  M  D 
Sbjct: 493 KPDYIKIDGSLVKNIHIDNNSFLITKTINDFAHSLGIKTVAEFVHCDAVFKLLQTMDIDE 552

Query: 935 IQDSHVASPL 944
            Q  + + PL
Sbjct: 553 FQGFYFSEPL 562


>gi|325262022|ref|ZP_08128760.1| putative diguanylate cyclase/phosphodiesterase [Clostridium sp. D5]
 gi|324033476|gb|EGB94753.1| putative diguanylate cyclase/phosphodiesterase [Clostridium sp. D5]
          Length = 636

 Score =  308 bits (788), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 184/421 (43%), Gaps = 14/421 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LT + NR+SF + LT  L            ++++ + +Y  +N   G   GD++L 
Sbjct: 224 RRDYLTMVGNRESFYEHLTLRLA-----GEQEFQLILLSLRQYDIVNQNYGHQKGDEILY 278

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++   +G L+     + R     F +++    +  + A     +++      ++      
Sbjct: 279 AVATELGRLI-PGGEVFRFGNVDFAMLIP-LQSQEQAAINFRTVKERCDETWSVGNIHTH 336

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLC 712
           V  +  +  +   + T S+M++  +  +  AK + G +   +  +     +   I E + 
Sbjct: 337 VRTAFMYLEYQGGECTPSQMMEYLDYGLRKAKEKPGVSIHFTEELLKEYKEEKRILEIMQ 396

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            +VE     + Y P+  L    +   EAL++ +  +   +  S F+ IAEE  +I  ++ 
Sbjct: 397 RSVEQKRFRVWYQPVYHLGVG-VRSAEALLRLNDYEGNPLPPSRFIPIAEESGLIDELSW 455

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +LE +   +             I +N++ +   D ++   +Q  +++   SP RIK+  
Sbjct: 456 IVLEEVCSFLEQNETDKIE---SISVNLSMQQFADIKISGRIQECLNRHHLSPDRIKIEV 512

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-- 890
           +E V++ + E  + ++  +   GI   LDDFGT  S L+ +   PF+ VK + SL+ G  
Sbjct: 513 TERVLLQDMEYMKHVMKEMNHAGIRFYLDDFGTGYSNLASVLEFPFECVKLDKSLLKGFP 572

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
                  ++R +  +  +   +++ + +      ++L R+G D IQ  + + PL      
Sbjct: 573 ENPDSEKMVRMLTELFHSFGNSVVVEGVEDASQAEQLHRIGVDRIQGYYYSRPLPQEVFA 632

Query: 951 K 951
           +
Sbjct: 633 E 633


>gi|226355335|ref|YP_002785075.1| signal transduction protein [Deinococcus deserti VCD115]
 gi|226317325|gb|ACO45321.1| putative signal transduction protein: sensor, PAS/PAC domains;
           regulator, GGDEF/EAL domains [Deinococcus deserti
           VCD115]
          Length = 876

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 110/618 (17%), Positives = 228/618 (36%), Gaps = 37/618 (5%)

Query: 353 GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            + +A         +  AL G L L V       +    +         +     +  + 
Sbjct: 280 LVSVASGGGAAQADVSLALGGTLALSVRRTSVPGLLIASSAPPGVHAAGAPAGLVAQMLS 339

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF- 471
              D     D        +   AT+LG+ +  + G    +   +       F    +   
Sbjct: 340 HLEDAAVALDHGGRVQFVSDPAATLLGVDAARLLG--LGFGRVLADLGVHAFTPQGEPLP 397

Query: 472 ---VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS---NGDILRYIGIANDITEQKKS 525
                 +    + E ++         M IR   ++     +G     +  A D+T  + +
Sbjct: 398 LPDWREQHKNFEKEIQLALPSGTVRTMQIRGSVLALEGTQSGKP-GLLLSARDVTALRHA 456

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +  +A  D LTG+ NR    + LT               V  + ++ +  +   LG 
Sbjct: 457 QAKMRHDARHDALTGLLNRAGLREVLT-------RPPTGPEAVACLGVEDFAALTAALGR 509

Query: 586 AVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              D +L+ L  R+ +L        ARL+   F + L               +R  +A P
Sbjct: 510 TAFDHLLIQLAARLNDLAAAYGGEAARLADTVFAVQLPGMAAPEATQ----RLRTMLATP 565

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           +    R++ +  ++G       ++ +  +  +AE+AM HA+ +G   V  F         
Sbjct: 566 LRAGRRDVPLGCALGVT----DQVNADRL-ADAEIAMQHARQQGRAQVSVFHPGMRAEVA 620

Query: 705 V--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +++ L  A+   +  L+Y P +RL D   +G EAL++W+HP  G +S   F+ +A 
Sbjct: 621 RTFELEDALGQALGGEQFTLLYQPAVRLSDGRPLGAEALLRWNHPSLGVLSPGAFLPVAS 680

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMP--PIFILINIASKDLLDNELCEGMQALISK 820
            + ++  ++ +++    +     R           + +N++  +L  +     +   +  
Sbjct: 681 RMDLLTQVSEWVVTAALQGRREVRAARPGAFADWQVSVNLSLAELRGSAGLGRLLPTLRA 740

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                    +  +   ++ + + +  LL +LR +G  L++DDFG   + L+ L   P   
Sbjct: 741 EGAP----DIEVTAGSLLDHSQDTLGLLEQLRSLGAQLSVDDFGDSSTNLAALTRFPLSA 796

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + +L     E   +  ++   + +A  +  ++ A  +     +  L  +GCD  Q  
Sbjct: 797 VKLHPTLTARVPEDARSVTLVEGTVDLAHRLGLSVTAVGVETPEQLAMLRDLGCDAAQGF 856

Query: 939 HVASPLGFNSILKLLKER 956
            +A PL    +L  L+  
Sbjct: 857 AIAPPLSTPDLLTWLQSH 874


>gi|322615152|gb|EFY12074.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617744|gb|EFY14640.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624662|gb|EFY21493.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626887|gb|EFY23683.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634073|gb|EFY30809.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635736|gb|EFY32446.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640260|gb|EFY36923.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646323|gb|EFY42836.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649416|gb|EFY45852.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656537|gb|EFY52826.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661512|gb|EFY57736.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665600|gb|EFY61784.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667124|gb|EFY63291.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671130|gb|EFY67258.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675229|gb|EFY71306.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680838|gb|EFY76873.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687013|gb|EFY82990.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192777|gb|EFZ78004.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323204923|gb|EFZ89914.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208242|gb|EFZ93186.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210949|gb|EFZ95810.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215733|gb|EGA00476.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221880|gb|EGA06278.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223915|gb|EGA08212.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231178|gb|EGA15293.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233613|gb|EGA17705.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237683|gb|EGA21743.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245666|gb|EGA29660.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247743|gb|EGA31685.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252959|gb|EGA36792.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256761|gb|EGA40486.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323268250|gb|EGA51725.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272189|gb|EGA55602.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 996

 Score =  307 bits (787), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 103/616 (16%), Positives = 218/616 (35%), Gaps = 19/616 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G    L + L    
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLTPHI 913

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G D I
Sbjct: 914 ADYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDLI 973

Query: 936 QDSHVASPLGFNSILK 951
               +A     + +L 
Sbjct: 974 YGDTIAEAQPLDLLLN 989



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGMLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|194735930|ref|YP_002115213.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197300821|ref|ZP_02661342.2| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194711432|gb|ACF90653.1| mase1 domain family [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290520|gb|EDY29875.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 998

 Score =  307 bits (787), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 103/616 (16%), Positives = 218/616 (35%), Gaps = 19/616 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G    L + L    
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLTPHI 915

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G D I
Sbjct: 916 ADYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDLI 975

Query: 936 QDSHVASPLGFNSILK 951
               +A     + +L 
Sbjct: 976 YGDTIAEAQPLDLLLN 991



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGMLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|107102017|ref|ZP_01365935.1| hypothetical protein PaerPA_01003064 [Pseudomonas aeruginosa PACS2]
          Length = 598

 Score =  307 bits (787), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 178 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 235

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 236 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 293

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 294 ANVGLGVLPLADDPLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 353

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 354 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 413

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 414 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 471

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 472 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRD 531

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 532 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 591

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 592 LEDWLRR 598


>gi|113968721|ref|YP_732514.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-4]
 gi|113883405|gb|ABI37457.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-4]
          Length = 876

 Score =  307 bits (787), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 198/425 (46%), Gaps = 10/425 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL   +         +  ++ ID+D++K+
Sbjct: 438 IRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S N      D A  + 
Sbjct: 498 INDTMGHLEGDRFLIETATRLRACIRSNDTLARLGGDEFVILLDSINGINDARDVAERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I++   L   E    ASIG     +   TS  ML+NA+ AMY AK  G      F  S
Sbjct: 558 QKISLSYTLGAIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDDS 617

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +     I  + D   A++  EL L + PI+ L  ++   LE  + W+HP+WG I    
Sbjct: 618 ASQQKMQDIAFENDFKQALQTGELQLQFCPIVDLQTQQTQALECRLTWEHPQWGTIPQEI 677

Query: 757 FMLIAEELCMIKAINLF---MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              +AE+  ++  ++ +   +L++    +++ +       + + + ++S+ L       G
Sbjct: 678 LSQLAEQANLMVELDKYTISLLDKSYHQLLASQ----GDKVELHLMLSSQHLKHKHALRG 733

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + +T  +  ++ L F+E  ++   E        L+K+ ++L +  +G+  S L+ L
Sbjct: 734 LKNALKQTKLALPQLWLFFNEKALVLETENHINGFELLKKLDVNLGISHYGSGHSSLNSL 793

Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            ++P   +K + ++      E+ I ++ +    A  ++       +     IK    +G 
Sbjct: 794 LFLPIKGLKLDANITKQLQDEQHIKLMSAYQKAASTLDLQTFVDGLQSAEQIKIFHALGY 853

Query: 933 DYIQD 937
            + Q 
Sbjct: 854 RFGQG 858


>gi|257790497|ref|YP_003181103.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Eggerthella lenta DSM 2243]
 gi|257474394|gb|ACV54714.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Eggerthella lenta DSM 2243]
          Length = 997

 Score =  307 bits (787), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 236/637 (37%), Gaps = 43/637 (6%)

Query: 337 AVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYF 396
           A  L+   ++  +        +   +                  ++    +   + +   
Sbjct: 381 AASLVVGLLIAVVAAWLSSSRLRHLMSEVRAAQPEQPIAFTPTGIVEVDELSEAIESMGE 440

Query: 397 SQGIFSDGERQSLAVLGS--GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              + +   R S  +  S  G   +++    D +T T      L     ++  P  ++  
Sbjct: 441 EVAMTAS--RLSRILRLSDRGIGAFEYSYETDAITFTDGFFATL----STLEPPDPSYFD 494

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR----IRPMSNSNGDIL 510
              I       +  +S + +    ++ E      + ++ +        +R +   +G+  
Sbjct: 495 PQRIATGSLSASEFESLMKWYVPYIEVE-----EEGRYLFTGPHRTSWVRLVVVESGEHN 549

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R +G+  D+T + ++   I      D LTG+ NR++F   +T +L            +++
Sbjct: 550 RVLGLVEDVTHEIETRRRIEHERDHDILTGLFNRRAFEQEVTDLLA---QRPPALGAMLM 606

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D  K IND+ G   GD  + +  R + E  +     +R+SG+ F + +    +   +
Sbjct: 607 LDLDNLKFINDIYGHDWGDQYIKAAGRVVDEAFRDKGFYSRISGDEFLVFVDVCPDRASV 666

Query: 631 ADFAIAMRKSIAMP--INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            D     R  +     +    + + V AS+G A +       + + + A+ AMY AK   
Sbjct: 667 EDLFATFRAMLDASSIVAPDGKTLKVRASMGAAFYPEDATDFAHLREYADFAMYLAKSSR 726

Query: 689 GNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
              + SF   S+     ++    DL   +E   +   + PI+ L   E V  EAL++   
Sbjct: 727 KGDLFSFDRQSYEEKSFIVNNKEDLNRLLEEGLVEYHFQPIVDLRAGEPVAYEALMRSQL 786

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN-IASKDL 805
                 +  + + +A     +  +              + +        + +N IA++ L
Sbjct: 787 DT--IPTPDQVLALARSQSKLYRVEHLTFFGALEAFSRYPEAHGA---TLFVNSIATQRL 841

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             ++  E +     +      R+ +  +ES         +  L   R+ G  L +DDFG+
Sbjct: 842 SSDD--ELVLN--ERYPDLLKRLVIEITESDYSREMALYKEALA--RRFGARLAIDDFGS 895

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             +  + L     D VK +  ++      +    I R++I  A +    +IA+ +  E +
Sbjct: 896 GNNGETSLLDYHVDFVKIDMEIVRDIDVAKDHQDIARNLIGYAHDRSIRVIAEGVETEAE 955

Query: 924 IKELTRMGCDYIQDSHVASPLGF-----NSILKLLKE 955
           ++ L  +G DY+Q      P        + + +L++ 
Sbjct: 956 LRALRELGADYVQGYLTGRPAPEPRDVDDEVKRLIRS 992


>gi|323260020|gb|EGA43647.1| mase1 domain family protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
          Length = 988

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 102/612 (16%), Positives = 216/612 (35%), Gaps = 19/612 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 387 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 438

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 439 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 498

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 499 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 557

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 558 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESPQ-HHALVFIDLDRFKAVN 616

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 617 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 676

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 677 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 736

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 737 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 796

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 797 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 853

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G    L + L    
Sbjct: 854 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLTPHI 913

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G D I
Sbjct: 914 ADYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDLI 973

Query: 936 QDSHVASPLGFN 947
               +A     +
Sbjct: 974 YGDTIAEAQPLD 985



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 127 LAIGSAVIPPLLGGMLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 182

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 183 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 238

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 239 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 298

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 299 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 356

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 357 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 416

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 417 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 461


>gi|218891454|ref|YP_002440321.1| putative EAL domain [Pseudomonas aeruginosa LESB58]
 gi|218771680|emb|CAW27454.1| putative EAL domain [Pseudomonas aeruginosa LESB58]
          Length = 587

 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 167 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 224

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 225 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 282

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 283 ANVGLGVLPLADDPLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 342

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 343 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 402

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 403 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 460

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 461 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRD 520

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 521 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 580

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 581 LEDWLRR 587


>gi|330941822|gb|EGH44566.1| GGDEF domain-containing protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 290

 Score =  307 bits (786), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 131/271 (48%), Gaps = 3/271 (1%)

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            + G       ++S   +++ + +DL  A+++ +  + Y P    +    VG EAL++W+
Sbjct: 3   RQSGYSFFDASMNSNARNQLQMSQDLHRAIKHRQFCIYYQPKFDAVTGLPVGAEALLRWN 62

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
           HP+ G +    F+ +AE+  +I  I  ++L+   R +  W  Q       I +N+++   
Sbjct: 63  HPEQGVLGPDLFISMAEKTGLIIQIGEWVLDEACRQMREWYTQ-GYSHWRIAVNLSALQF 121

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             + L   +   +++     + + L  +E+  M + + S  +L RL ++G+ L++DDFGT
Sbjct: 122 CHSGLVTAVADTLARHQLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGT 181

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S L YL  +P + +K +   +          AI+ +I+ + + +   I+A+ +   + 
Sbjct: 182 GYSSLMYLKRLPANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQ 241

Query: 924 IKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            + LT +GC  +Q   +  PL     L+ ++
Sbjct: 242 QRFLTHLGCHSLQGFLLGYPLPAQQFLEEIR 272


>gi|254240999|ref|ZP_04934321.1| hypothetical protein PA2G_01680 [Pseudomonas aeruginosa 2192]
 gi|126194377|gb|EAZ58440.1| hypothetical protein PA2G_01680 [Pseudomonas aeruginosa 2192]
          Length = 587

 Score =  307 bits (786), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 167 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 224

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 225 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 282

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 283 ANVGLGVLPLADDPLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 342

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 343 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 402

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 403 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 460

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 461 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRD 520

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 521 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 580

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 581 LEDWLRR 587


>gi|150017284|ref|YP_001309538.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903749|gb|ABR34582.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 989

 Score =  307 bits (786), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 105/541 (19%), Positives = 217/541 (40%), Gaps = 36/541 (6%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +       +++ I  + V  T     ++G+         + +  Y+   D+  F  I+  
Sbjct: 452 LFNMPIGAFEYKIGHEVVLCTDTFFDVIGIE------KSKRFDSYV---DKRYFSKIIKK 502

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
               +    +  +R++ A+ +  W+ ++I        +  R +G+ +DIT++    + I 
Sbjct: 503 ITEEKESFQEETYRIKGANKETKWIKLKILE------EESRTLGVVSDITQEILEKQKIE 556

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D LT + NR++F + +  IL+   ++D      ++ D+D  K +ND  G   GD+
Sbjct: 557 YERDYDILTNMLNRRAFHNTVKEILE---SEDLKVGAFIMWDLDNLKYVNDTYGHDYGDE 613

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN--LL 648
            +   +  + E  K+  ++ R SG+ F   L    +  +I     ++   I   +     
Sbjct: 614 YIRKASEILKEFEKYGGVVGRRSGDEFYTFLYGYEDKYEIRKIVKSIHSGIENSVLKLPN 673

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVM 706
            RE+ V  S G A +    IT  ++ K ++ AMY  K   +G     +    +  S    
Sbjct: 674 NRELKVRISTGIAWYPHDAITFKDLAKYSDFAMYKIKKTVKGNISEFNKEEYTEDSFLFS 733

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +EDL   ++   +   + PII     +I   EAL++         +    + +A     
Sbjct: 734 SQEDLNKLLDEKLIKYAFQPIIDARTGKIFAYEALMRSQLESLK--NPLHIIKLATADSR 791

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I      +     +  +++     +F  IN     +L  E  +  + L         
Sbjct: 792 LYEIEKITFFKALESFVRNKEEFKDAKLF--INSLPNYVLSYEDRKRFEEL---YGEHLD 846

Query: 827 RIKLSFSESVVM--GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           R+ +   E+      N    R ++    K    L +DDFG+  +  + L  I  D VK +
Sbjct: 847 RLVIELLENERSNGDNISIKRKVIE---KWNAKLAIDDFGSGYNNEAVLLAITPDYVKID 903

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             ++ G  +   R  I +++I  AK  +  ++A+ +    ++ +L   G DY+Q  + + 
Sbjct: 904 MEIVRGIDKDLNRQQISKNLISYAKQRKIKVVAEGVETREELTKLIEFGVDYLQGYYFSK 963

Query: 943 P 943
           P
Sbjct: 964 P 964


>gi|59714197|ref|YP_206972.1| EAL domain-containing protein [Vibrio fischeri ES114]
 gi|59482445|gb|AAW88084.1| EAL domain protein [Vibrio fischeri ES114]
          Length = 526

 Score =  307 bits (786), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 100/401 (24%), Positives = 188/401 (46%), Gaps = 6/401 (1%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     ++     +  I I  Y+ + +       + +L   +  + +     ++      
Sbjct: 115 LIEDKINNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVKKHRNDRNVSIFYDT 174

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           N   II+ +  N  KI + A+ + + +  PI +  +   +   IG   +++    + EML
Sbjct: 175 NE-IIIIGNLTNKDKINNIALEVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEML 233

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDR-VMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           K  ++A Y AK  G          +   +  V I   L  A+ N E  L Y PI+  +D+
Sbjct: 234 KRVDIACYKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDK 293

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            + G EALI+W       I   +F+ IAE+   IK I  +++ ++A DII    + +   
Sbjct: 294 TLHGYEALIRWPQKDGSMIPPDKFISIAEKNNYIKGITQWVVSQVASDIIRL--KNDNLN 351

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             + INI++ DL D++L   +  ++      PS + L  +ES +M + + + L+L +L +
Sbjct: 352 FQVHINISTLDLYDDDLYNQLFDMVVNKHLEPSSMILEVTESALMSDVDAAYLMLSKLSE 411

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIET 911
           +G  +++DDFGT  S LS L  + F+ +K + S +          AI+ S I +A ++  
Sbjct: 412 LGFYISIDDFGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGC 471

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            ++A+ +  E    EL  +GCDY+Q  +++ P   +SI+  
Sbjct: 472 NVVAEGVEDEHLFAELQELGCDYVQGYYISKPQDIDSIINW 512


>gi|254235553|ref|ZP_04928876.1| hypothetical protein PACG_01480 [Pseudomonas aeruginosa C3719]
 gi|126167484|gb|EAZ52995.1| hypothetical protein PACG_01480 [Pseudomonas aeruginosa C3719]
          Length = 587

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 167 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 224

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 225 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 282

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 283 ANVGLGVLPLADDPLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 342

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 343 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 402

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 403 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 460

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 461 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRN 520

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 521 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 580

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 581 LEDWLRR 587


>gi|325684612|gb|EGD26769.1| signal transduction diguanylate cyclase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 741

 Score =  306 bits (785), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 182/424 (42%), Gaps = 14/424 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D++T + +  +F   +   L     +  L+  ++  DI  +K  N   G+  GD++L  L
Sbjct: 196 DSVTNLCSVTAFRHHVAYELAEIKANPGLKLDLVHFDISNFKFFNKEHGLKAGDELLKRL 255

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            + I + +  P ++ R   + F  ++        I +   A+         + +     +
Sbjct: 256 AQVISQEVGSPWLV-RSVADHFYALIPDSKVDQAIRNVHDAI---------IGDEAFGAS 305

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
              G    ++S    S  +  A +A  +A     N+   +         +   +   +  
Sbjct: 306 IRAGIYPLSASDQQVSFAMDRARIAANNAVGNYRNYYCRYEEKMEADLTLANYLLSHIDE 365

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           AV    + + Y PI+     +I   EAL +W   K+  ++  EF+ + E   +I  ++L 
Sbjct: 366 AVAKGWIKVYYQPIVDTFSSKISTYEALARWIDTKYVFLNPGEFIEVLERGHLIHKLDLH 425

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+ + +D+     +    P+ + +N++  DL   +L E +  +++      S+I++  +
Sbjct: 426 ILDLVCQDLEEAMQKGETYPM-VSVNLSRYDLELPDLHERINNILASHGVKSSQIRIEIT 484

Query: 834 ESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           ES ++ N E      + R  + G  + LDDFG+  S L+ L    FD +K + + +  + 
Sbjct: 485 ESALLSNTEAVIKEHISRFHEDGYQVWLDDFGSGFSSLNSLQNFDFDLLKIDMAFLRHAN 544

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           EK   IL  +I MAK +    +++ +  + +   L  +GC   Q  + + PL  + I   
Sbjct: 545 EKTPTILMDVIDMAKRLGIETLSEGVETKDEYDFLHSIGCVLAQGFYFSQPLQKDKITAK 604

Query: 953 LKER 956
            KER
Sbjct: 605 RKER 608


>gi|254458614|ref|ZP_05072039.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084922|gb|EDZ62209.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 280

 Score =  306 bits (785), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 145/281 (51%), Gaps = 5/281 (1%)

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           MY AK  G N+ + +  +          ++  L  A++N E  + Y   +    + I+G+
Sbjct: 1   MYKAKDEGRNNFQYYNSTLTELAFERVVMEASLRAALKNEEFIVYYQAQVNGDTDTIIGM 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W HP  G +S ++F+ +AE   +I  ++ ++++     I  W ++   P + + +
Sbjct: 61  EALVRWQHPTMGLVSPAKFIPLAESTGLIVELDRYVMKTAMTQISKWYEEGLNPGV-LAM 119

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+A K L   +  E  Q L+  T   P  + L  +E  +M +PE++ ++L ++  +GI L
Sbjct: 120 NLAVKQLQKEDCIEVFQELVKVTQCRPEWLALEVTEGKIMTHPEKAIVILQKISDLGIEL 179

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S L+YL  +P D +K + + +      E+   I +++I +AK++   +IA+
Sbjct: 180 SVDDFGTGYSSLAYLKRLPIDKLKIDQAFIRDLPDDEEDAGITKAVIALAKSLNLKVIAE 239

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +  ++    L   GC+ IQ    + P+  +    +L+  F
Sbjct: 240 GVETQVQRDFLVENGCENIQGYFYSKPIPSDEFENILRNGF 280


>gi|251771341|gb|EES51922.1| diguanylate cyclase/phosphodiesterase [Leptospirillum
           ferrodiazotrophum]
          Length = 375

 Score =  306 bits (785), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 167/369 (45%), Gaps = 13/369 (3%)

Query: 601 ELLKFPDILARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINLL---EREITVTA 656
             L+  D+LARL G+ FG++L + + +   + DF   +  ++  P +L       +++T 
Sbjct: 1   NALRETDMLARLGGDEFGLLLTNLSAADSDLPDFFSRIVDALHAPFDLEVEEGEGLSITG 60

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLA 714
           S+G       +     +L +A+LA+Y  K RG +    F         D+  I  +   A
Sbjct: 61  SLGLTLCPPEEPLPEVLLSHADLALYRGKERGKDRWFLFESQMSDSLEDQHRIHREFEQA 120

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +   E+ L Y P + L D  I+G+EAL +W+HP+ G +    F+ I E+  ++  +   +
Sbjct: 121 LSRREIVLHYQPQVGLEDGTILGVEALARWNHPEKGLLFPDSFIDIVEKTPLVMRLGRLV 180

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT---LYSPSRIKLS 831
           LE        W +      + I +N+ +   L     + ++ L+         P  + + 
Sbjct: 181 LELAQEQKRQWHEAGLD--LRISVNVGALHFLSGSFGQDIEDLLRTHFPGGDFPGGLVIE 238

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  +  +   ++ +     + GI L+LDDFGT  + L+ L  +P   +K +   +   
Sbjct: 239 ITERELFRDLSLAQKVAEFCHERGILLSLDDFGTGQASLTALQKLPVREIKIDRGFVQRI 298

Query: 892 T--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              EK  AI+ S++   + ++  ++A+ +  + D   L  MGC + Q   +A P+  + +
Sbjct: 299 HQGEKDRAIVASLLATGQMMKIDVVAEGVETQEDGSSLISMGCRWAQGFGIARPMPPSDL 358

Query: 950 LKLLKERFP 958
              ++   P
Sbjct: 359 PGWIRGWSP 367


>gi|15597763|ref|NP_251257.1| hypothetical protein PA2567 [Pseudomonas aeruginosa PAO1]
 gi|9948628|gb|AAG05955.1|AE004685_1 hypothetical protein PA2567 [Pseudomonas aeruginosa PAO1]
          Length = 587

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 167 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 224

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 225 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 282

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 283 ANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 342

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 343 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 402

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 403 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 460

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 461 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRD 520

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 521 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 580

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 581 LEDWLRR 587


>gi|313906553|ref|ZP_07839883.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313468622|gb|EFR63994.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 582

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 184/435 (42%), Gaps = 18/435 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  + F D+LTG+  + +F   L   +      ++ RP  +  DI   K IN+  G  V
Sbjct: 19  RLERDLFYDSLTGLLTQYAFNQELEDQIA-GIFSESQRPVFIFADIVGMKHINNEYGFFV 77

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           G++V+ S+ + +        + +R   + F ++    +   ++      ++  +     +
Sbjct: 78  GNEVIGSVGKALKRAFSRG-LCSRYDNDHFLVLTEDRDAIDRLDYVYTLLQDYLLQVPAV 136

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
                      G           +     A +A           +  +    +       
Sbjct: 137 D-------LKFGVYYQDHKDEEPALNCDKARIAERAIHGDHRCRISVYTEDMYVKYMRRN 189

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +   +  A++N E+ + Y PIIR +  ++  +EAL +WD P+ G IS  EF+   EE  
Sbjct: 190 HVLSHIQDAIDNGEIRVSYQPIIRSVSLKVSAVEALARWDSPQEGIISPEEFIQYLEEEH 249

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           M   ++++ +E + R+    R++  +P + + +N++   L   ++ + +  L  K    P
Sbjct: 250 MSSLLDMYTVETVLREFED-REKVGLPIVPVSVNLSQSTLETIDVVKEVNGLTEKYDILP 308

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             + +  +ES  + NPE+ R ++    + G  + +DDFG+  S L+ L    FD +KF+ 
Sbjct: 309 DYLIIEITESACVRNPEKLREVIDGFHQAGFRVWMDDFGSGYSSLNVLQKFDFDLIKFDM 368

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +   T   K   I R ++ MA ++    +A+ +  + +   L  +GC+ +Q      P
Sbjct: 369 RFLEDFTFESKGEKIFRHMVKMAHDLHIHTLAEGVNTKEEYNFLKSIGCERMQGYLFGRP 428

Query: 944 LGF----NSILKLLK 954
           +      + + K ++
Sbjct: 429 IPLGGYSDELTKNIQ 443


>gi|221640556|ref|YP_002526818.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           KD131]
 gi|221161337|gb|ACM02317.1| Diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           KD131]
          Length = 508

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 178/425 (41%), Gaps = 10/425 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R   +  L  +L    +        +V+  D   K+ D  G A   +VL     R+
Sbjct: 71  GLALRPQVIASLDRVLQDRESTGRTT-ACLVLQFDGMDKLLDRHGRAAQSEVLARCCDRL 129

Query: 600 GELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
              L+  D +ARL G    + L      +   +   A  ++ +IA PI++    I VT S
Sbjct: 130 CSALREGDTVARLEGGGLAVALHPVRRLDLQSVVLLAGRLQTAIAAPISVEGTRIHVTCS 189

Query: 658 IGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLA 714
           IGF     +   T   +L  A++A   A   G   V ++ +   R+          L  A
Sbjct: 190 IGFCLAERTPTPTGRALLDAAQVAADEASRNGPGAVRAYALGMSRNRADRDAYRGLLETA 249

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +    + P IR  D  + G E L +W HP+ G +   +F+   E   + + +   M
Sbjct: 250 LDTGQFTGWFQPQIRTEDGAVGGFEVLSRWQHPERGLLLPQDFLPAIERAGLSERLGEVM 309

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +    +  W       P  + +N ++ DL +  L + ++  + +   +P+R+ +   E
Sbjct: 310 LFQALTALRHWDRAGLCVPC-VAVNFSATDLRNPRLVDRLKWELDRFELTPARLSVEILE 368

Query: 835 SVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           +VV     +     +  L   G  + LDDFGT  + ++ +       +K + S +    S
Sbjct: 369 TVVAEGASDVVVHNIAGLSACGFGVDLDDFGTGHASITTIRRFALRRLKIDRSFVTRADS 428

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  +L +II MA+ +    +A+ +    ++  LT +GC Y+Q   +A P+  +    
Sbjct: 429 DAAQRTMLAAIISMARQLGLETLAEGVETPGELATLTALGCGYLQGYAIARPMALSDATA 488

Query: 952 LLKER 956
            L+ R
Sbjct: 489 WLENR 493


>gi|204929113|ref|ZP_03220256.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321657|gb|EDZ06856.1| PAS domain protein [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 998

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/616 (16%), Positives = 218/616 (35%), Gaps = 19/616 (3%)

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATG-YFSQGI 400
             W L+ +  +        R  ++     +     +  +       Q ++      +  +
Sbjct: 389 VVWALLAVSLV--------RHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANDAL 440

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           F + ER  + +   G+ V   D+  +     P    + G       G     +  I   +
Sbjct: 441 FQEKERLHITLDSIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGN 500

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           +      +       R  ++ E  +   +   + +   I P+S  +GD +  + +  D+T
Sbjct: 501 KGPLLEDIYRA-DRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVT 559

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E +K L  +  +A  D LT + NR SF  +L   L            ++ ID+D++K +N
Sbjct: 560 ESRKMLRQLSYSATHDALTHLANRASFEKQLQQRLQTIQESSQ-HHALVFIDLDRFKAVN 618

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N+          +   
Sbjct: 619 DSAGHAAGDALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIVTRLINAV 678

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                    R   + AS G           +E++  A++A Y AK+ G   +  +     
Sbjct: 679 NEYHFMWEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHA 738

Query: 701 ---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + ++E   +   N  L L  +       E        ++    +   +    F
Sbjct: 739 LTSSKGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAF 798

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
                +  +  A++  +         +         + + + +++  L    L + +   
Sbjct: 799 RAGLADSALHHALDRRVFHEFFHHAATAVASKG---LSVALPLSAAGLYSATLIDELLEQ 855

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +   P  + L     V++   + +   L +LR+ G  + L   G    L + L    
Sbjct: 856 LEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLTPHI 915

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +  +  L+    E      +   I   A++++   +A  +     +  L+R+G D I
Sbjct: 916 ADYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDLI 975

Query: 936 QDSHVASPLGFNSILK 951
               +A     + +L 
Sbjct: 976 YGDTIAEAQPLDLLLN 991



 Score = 81.5 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 104/354 (29%), Gaps = 23/354 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELL--IWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A        +  G L  L+   +      +    SE   + +L+    ++    + H  
Sbjct: 129 LAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWVLSEAIGALTLVPLGLLF----KPHYL 184

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
           + +     +    +   ++     +           +++       +  ++       LI
Sbjct: 185 LRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTCVIVLLM----WSAVRLPRMEAFLI 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               +I +  +              +   +     L+++L    +   + A     + I 
Sbjct: 241 FLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHIT 300

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     ++  LG +   +      +       D 
Sbjct: 301 ESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDEL--RTMTFQQLTWPEDL 358

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    L+  V         E R    +    W ++ +  + + +   L +I    DI +
Sbjct: 359 NNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHKDNKPLYFIAQIEDIND 418

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFL--DRLTTILDLSATDDNLRPTVMVIDI 573
            K+S +       +  +T   N   F   +RL   LD           V+ ID+
Sbjct: 419 LKQSEQENQRLMER--ITQ-ANDALFQEKERLHITLDSIGE------AVVCIDV 463


>gi|160894710|ref|ZP_02075485.1| hypothetical protein CLOL250_02261 [Clostridium sp. L2-50]
 gi|156863644|gb|EDO57075.1| hypothetical protein CLOL250_02261 [Clostridium sp. L2-50]
          Length = 568

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 177/426 (41%), Gaps = 20/426 (4%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PN   F+  +   L                ++  +  ++   G A GD ++      
Sbjct: 145 TMLPNSAGFVRIIQQHLQDQTICQYNGF---YFNLKSFGLLSYKYGGAEGDLMIKRYAVA 201

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--EITVTA 656
           + + L   + LA L G+ F  ++     +  +      + + + +    + R   + + A
Sbjct: 202 VRKWLAEDETLAHLGGDNFMALVKKSRTAEFL-----HLLEKVEVTAKYMGRVVPVYIAA 256

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE-SFRVSSFRSDRVMIKEDLCLAV 715
           + G    T+       ++    +A+ +A+     +   + ++     D   +++ L  A+
Sbjct: 257 AAGAYEITAKDRDPGNIMNGLSIAVSYARQHKLPYAFLTDKMLEETVDVQRMEQMLPEAL 316

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  E  + Y P + +   +IVG EAL +W H     I    F+   E    I  ++L++L
Sbjct: 317 EKREFQVYYQPKVDIRTGQIVGTEALARWIH-NGEVIQPFRFIPTMERNGFIIHLDLYIL 375

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDL----LDNE-LCEGMQALISKTLYSPSRIKL 830
           +R+   I  W ++     + I +NI+  D+     D   L E +  +I +    P  I +
Sbjct: 376 KRVCEAINEWIEKGYKL-VPISVNISRNDISGVGHDPRMLAERIIRIIKEYDIDPKYIII 434

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+      +     +  + + GI+ ++DDFGT CS LS L   P + +K + S +  
Sbjct: 435 EVTETTEASEQKDLYDFIKNMSEAGIATSIDDFGTGCSTLSVLRDFPVNEIKIDRSFINH 494

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + +   I++SII MA+ +   +I + +  E   + L  +GC++ Q      PL  ++
Sbjct: 495 EAFSTQDQIIIKSIIQMARQLNLNVITEGVETEEQARFLLELGCNHAQGYLYDKPLEQSA 554

Query: 949 ILKLLK 954
               L 
Sbjct: 555 FESRLS 560


>gi|332559537|ref|ZP_08413859.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           WS8N]
 gi|332277249|gb|EGJ22564.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides
           WS8N]
          Length = 508

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 178/425 (41%), Gaps = 10/425 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R   +  L  +L    +        +V+  D   K+ D  G A   +VL     R+
Sbjct: 71  GLALRPQVIASLDRMLQDRESTGRTT-ACLVLQFDGMDKLLDRHGRAAQSEVLARCCDRL 129

Query: 600 GELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
              L+  D +ARL G    + L      +   +   A  ++ +IA PI++    I VT S
Sbjct: 130 CSALREGDTVARLEGGGLAVALHPVRRLDLQSVVLLAGRLQTAIAAPISVEGTRIHVTCS 189

Query: 658 IGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLA 714
           IGF     +   T   +L  A++A   A   G   V ++ +   R+          L  A
Sbjct: 190 IGFCLAERTPAPTGRALLDAAQVAADEASRNGPGAVRAYALGMSRNRADRDAYRGLLETA 249

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++  +    + P IR  D  I G E L +W HP+ G +   +F+   E   + + +   M
Sbjct: 250 LDTGQFTGWFQPQIRTEDGAIGGFEVLSRWQHPERGLLLPQDFLPAIERAGLSERLGEVM 309

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L +    +  W       P  + +N ++ DL +  L + ++  + +   +P+R+ +   E
Sbjct: 310 LFQALTALRHWDRAGLCVPC-VAVNFSATDLRNPRLVDRLKWELDRFELTPARLSVEILE 368

Query: 835 SVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGS 891
           +VV     +     +  L   G  + LDDFGT  + ++ +       +K + S +    S
Sbjct: 369 TVVAEGASDVVVHNIAGLSAFGFGVDLDDFGTGHASITTIRRFALRRLKIDRSFVTRADS 428

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +  +L +II MA+ +    +A+ +    ++  LT +GC Y+Q   +A P+  +    
Sbjct: 429 DAAQRTMLAAIISMARQLGLETLAEGVETPGELATLTALGCGYLQGYAIARPMALSDATA 488

Query: 952 LLKER 956
            L+ R
Sbjct: 489 WLENR 493


>gi|313900153|ref|ZP_07833653.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
 gi|312955205|gb|EFR36873.1| diguanylate cyclase (GGDEF) domain protein [Clostridium sp. HGF2]
          Length = 572

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 166/426 (38%), Gaps = 13/426 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT I N + F++    +L       N +  +    I  ++ IN + G A GDDVL S+
Sbjct: 153 DALTQIFNLEGFVEAARELL----QHTNQQYALFKFGISDFRFINQIHGYAFGDDVLKSI 208

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            R +    +  ++ AR+  + F  +L   +            +  +  PI +   + T+ 
Sbjct: 209 ARNLQSFCQKDELCARIEKDTFAALLRFTSIDDFYNRLHCIRKHLLDEPI-VSCLKHTLQ 267

Query: 656 ASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---FRSDRVMIKEDL 711
              G      +   +   ML  A LAM + +         +        ++ R  + E+ 
Sbjct: 268 YIGGVYLIQDACGESIKSMLDKAVLAMQYVERNSRVSDFVYFEDWMLEQKNRRSELLEEA 327

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++     L   P   + D  +V  EAL +W       +S  EF+ + E+  +I   +
Sbjct: 328 VKAIQEDTFQLFIQPQFLISDGSVVSGEALSRWFLKDGSCVSPDEFIPLFEKHGVISGFD 387

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++L ++ + + +  D+     + I IN +   + + +       ++        ++   
Sbjct: 388 FYVLHKLCKFMRTCLDEGKEL-LPISINQSRLHIKERQYLRRFCEIVDSYAIPHEKLVFE 446

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES    N    ++ +  +   G  + +DDFGT  + +  L  +  D +K +  ++ G 
Sbjct: 447 LTESAFTDNANDLQVFMKDIHDAGFQIAIDDFGTGYAGIGMLSQVDADILKLDKGMLNGI 506

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              R    I   II MA +I   +I + I       +L  + CD  Q   V+  +     
Sbjct: 507 NTDRRQMTIFWKIIEMAHSIGMQVICEGIETREQYADLRMLRCDIGQGFLVSRAIAATEF 566

Query: 950 -LKLLK 954
             K L+
Sbjct: 567 AEKYLR 572


>gi|313107476|ref|ZP_07793663.1| putative EAL domain-containing protein [Pseudomonas aeruginosa
           39016]
 gi|310880165|gb|EFQ38759.1| putative EAL domain-containing protein [Pseudomonas aeruginosa
           39016]
          Length = 587

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 167 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 224

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 225 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 282

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 283 AIVGLGVLPLADDPLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 342

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 343 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 402

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 403 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 460

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 461 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPVTAIKLDQSFTRD 520

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 521 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 580

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 581 LEDWLRR 587


>gi|224372310|ref|YP_002606682.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223588775|gb|ACM92511.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 705

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/419 (22%), Positives = 180/419 (42%), Gaps = 32/419 (7%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F D + ++          +P +++I+ID++K IND  G  +GD VL  
Sbjct: 307 TDKLTGLYNRNKFDDDVKSL---------NKPVLVLINIDRFKHINDYYGSKIGDKVLKK 357

Query: 595 LTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
           + + +   +      L RL  + FGI+   EN    +   A  + +      I +   +I
Sbjct: 358 VAKVLQTTIPVINANLYRLGADDFGIMYEYENYPN-VQTLARKIIEFFEKNEIEIDNIKI 416

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKED 710
            ++ SIG         T   +L+NA++A+   K      +  +   ++     +  I++ 
Sbjct: 417 NISVSIGI-------STKQPLLENADIALKQIKKSFRKKIMIYEENMNVRDEIKQNIEKS 469

Query: 711 --LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+++  +   + PI+     +I   E L +  HP     S   ++ IA++  +  
Sbjct: 470 KILYHAIKDGRIEPYFQPIVDTNTTKITKYEVLARLIHPNGVVESIFPYLQIAKDNKLYG 529

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I   ++++         D+     +   INI+ +D+LD  + + M  L  K      R 
Sbjct: 530 DITKIIMKKT-------YDKVIKKEVDFNINISIEDILDTSIIKQMYHLYLKNKALSKRT 582

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + +    R  L R++  G S+ +DDFG+  S   +L  +  D +K +GSL+
Sbjct: 583 TFEILESEAVEDYNEIRKFLERVKYYGASIAIDDFGSGYSNFEHLINLNVDFIKIDGSLI 642

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                      I++ I   AK I+   +A+ +  +   + + ++G +Y Q  +   P  
Sbjct: 643 KQLPSNPDAYKIVKVITDFAKEIDIKTVAEFVIDQKTYEMVRKLGINYAQGFYFYEPRS 701


>gi|163782317|ref|ZP_02177315.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882350|gb|EDP75856.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 625

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 183/430 (42%), Gaps = 25/430 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +K++ E  L   + D LTG+ N+              +  D  R  + +IDID ++KIN 
Sbjct: 216 RKRAAERAL---YVDRLTGLYNKNYID-------VEGSRIDLDRYYIALIDIDDFRKINT 265

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRK 639
             G   GD +L   +  + E L    +L R +G  F ++L  E      ++  F   ++ 
Sbjct: 266 TYGEEAGDSILREFSNFLREFL-GDVLLVRYAGEEFLVLLPKERFRKKSEVMRFFEELKD 324

Query: 640 SI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            + ++       E+ +  SIG         +  E +K A+ A+Y AK  G + VE+   +
Sbjct: 325 RVKSVVFPYNGYEVRLKVSIGVNLSPERSRSIEEAIKGADRALYRAKREGKDRVEAHDET 384

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R +   D+  A+E+  +   Y PI+ L   EI   EAL +    K   +S + F+
Sbjct: 385 VEELKRRLSIADVRDAIESGRVICHYQPIVDLRTHEISHYEALARIKDEKGEIVSPNMFL 444

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              +   +       ++    + +           I + IN+   D+ D  + E ++++ 
Sbjct: 445 EDIKGTFIYTRFVKEIIRMNVKLLKE------REDIRVSINLIPTDVTDETVLEELRSID 498

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +      R+ L  +E   + + ER +  +  LRK+G  + +DDFG   S L  +  +  
Sbjct: 499 KR---IRGRMLLEITEVEGIPSFERMKESVMELRKLGFRICIDDFGAGYSNLINITQMRI 555

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +GS++      +    + ++I    K +   +IA+ +  E  +K L  +G DY Q
Sbjct: 556 DYLKIDGSIIKDIHRNKLSKLLTKTITSFCKEVNIKVIAEYVENEAILKTLRELGVDYGQ 615

Query: 937 DSHVASPLGF 946
             H+  P   
Sbjct: 616 GFHIGKPKPL 625


>gi|237747240|ref|ZP_04577720.1| signaling protein ykoW [Oxalobacter formigenes HOxBLS]
 gi|229378591|gb|EEO28682.1| signaling protein ykoW [Oxalobacter formigenes HOxBLS]
          Length = 705

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/440 (21%), Positives = 184/440 (41%), Gaps = 24/440 (5%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I  D+ ++K   + +   ++ D LTG+ NR  ++  L  + + S         ++ +DI+
Sbjct: 277 IQTDVKKRKIL-QQLEYLSYTDALTGLGNRNKYIRFLRGMEEESPKS----VGIVFLDIN 331

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             K+ ND  G   GD ++      +  +    + + R+ G+ F    ++          A
Sbjct: 332 GLKEANDKYGHVYGDRLIAKTAEILNMVF--ENHVFRIGGDEFIAFGVNIGKDQFDGRIA 389

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              R        L++       S G    +      SE++  A+  MY  K    +    
Sbjct: 390 KLHR--------LVDGAKDCNVSFGATWKSDDF-NISELISYADKLMYINKQSYYSSTRQ 440

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             +S      V +   L    +  +  +   P + L   E+ G EALI+        +  
Sbjct: 441 SNLSYRADITVKLIASL----KAGDYLIHLQPKVNLKTMELSGAEALIRRQDATGKLVMP 496

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           S F+ + E   +I+ I+ F LE++ + +  WRD+     + + +N++   L+++++ E +
Sbjct: 497 SRFIPLFEAENIIRHIDFFTLEKVCQVLSDWRDRGYRL-VPVSVNLSRITLMEDDIVEKL 555

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            A+  K       I +  +ES+     E    L   +R  G SL+LDDFG++ S  + L 
Sbjct: 556 IAVCRKYAVPHHLIDVEVTESISEMTTETLISLAKAIRNAGFSLSLDDFGSQYSDFAILT 615

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI-ETTIIAKDIYGEIDIKELTRMG 931
            I FD +K +  L+      EK   +L+  I +   + + + +A+ +  E   + L +  
Sbjct: 616 LIDFDLIKIDKRLVDEIESNEKSRILLKHSINICNEMHDVSSLAEGVETEKQHRLLKQFR 675

Query: 932 CDYIQDSHVASPLGFNSILK 951
           CDY Q    + P+   S  K
Sbjct: 676 CDYGQGYFYSRPIDVESFEK 695


>gi|117918832|ref|YP_868024.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. ANA-3]
 gi|117611164|gb|ABK46618.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. ANA-3]
          Length = 876

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 198/425 (46%), Gaps = 10/425 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL   +         +  ++ ID+D++K+
Sbjct: 438 IRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHSLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S N      D A  + 
Sbjct: 498 INDTMGHLEGDRFLIETATRLRACIRSNDTLARLGGDEFVILLDSINGINDARDVAERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I++   L   E    ASIG     +   TS  ML+NA+ AMY AK  G      F  S
Sbjct: 558 QKISLSYTLGAIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDDS 617

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +     I  + D   A++  EL L + PI+ L  ++   LE  + W+HP+WG I    
Sbjct: 618 ASQQKMQDIAFENDFKQALQTGELQLQFWPIVDLQTQQTQALECRLTWEHPQWGTIPQEI 677

Query: 757 FMLIAEELCMIKAINLF---MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              +AE+  ++  ++ +   +L++    +++ +       + + + ++S+ L       G
Sbjct: 678 LSQLAEQANLMVELDKYTISLLDKSYHQLLANQ----GDKVELHLMLSSQHLKHKHALRG 733

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + +T  +  ++ L F+E  ++   E        L+K+ ++L +  +G+  S L+ L
Sbjct: 734 LKNALKQTKLALPQLWLFFNEKALVLETENHINGFELLKKLDVNLGISHYGSGHSSLNSL 793

Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            ++P   +K + ++      E+ I ++ +    A  ++       +     IK    +G 
Sbjct: 794 LFLPIKGLKLDANITKQLQDEQHIKLMSAYQKAASTLDLQTFVDGLQSAEQIKIFHALGY 853

Query: 933 DYIQD 937
            + Q 
Sbjct: 854 RFGQG 858


>gi|296389004|ref|ZP_06878479.1| putative EAL domain [Pseudomonas aeruginosa PAb1]
          Length = 587

 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 167 YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 224

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 225 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 282

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 283 AIVGLGVLPLADDPLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 342

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 343 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 402

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 403 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 460

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 461 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRD 520

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 521 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 580

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 581 LEDWLRR 587


>gi|254459409|ref|ZP_05072829.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207083870|gb|EDZ61162.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 636

 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/418 (21%), Positives = 173/418 (41%), Gaps = 19/418 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LT I NR    +       +S   +    ++ ++D+DK+K +ND+ G   GD +L 
Sbjct: 223 FTDPLTQIYNRNYLQE-------ISPMLNLNNYSIAMLDLDKFKVVNDIYGHKAGDLILS 275

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREI 652
             +  I   ++  DIL R  G  F +++   N +   ++    +R+++          +I
Sbjct: 276 QSSMIIKSSIRDNDILIRYGGEEFLLLMHKRNPTDSSSEICERIRENLNAHVFTYENHKI 335

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KED 710
            +  SIG     +S+ + +E +K A+  +Y AK  G N V  F   +             
Sbjct: 336 VMQISIGVHENPASEKSLNEAIKVADKMLYIAKKEGRNRVVHFNDKAQSMILSRTKDINF 395

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E   +   Y PI   +  EI+  EAL++        I+   F+   ++  +   +
Sbjct: 396 VKAAIEEDRVICFYQPIYNQLTNEILKYEALVRIKDKDNNIIAPVFFLPGLKDTNIHYKL 455

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L  +        ++       + INI   DL++ ++   +           SR+  
Sbjct: 456 TQRILSIVF-------EKFKDSEHCVSININFSDLINQDIETTITDTFITNPDLASRVTF 508

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              ES  + N    +  +  L      +++DDFG+  S    +  I  + +K +G L+  
Sbjct: 509 EILESDEIENITLFKEKIALLHLFKAKVSIDDFGSGYSNFKTILDIEANYLKIDGGLVKN 568

Query: 891 ST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               EK   +++SII  A       +A+ ++ +    +L  +G DY+Q  ++A P   
Sbjct: 569 IDINEKDYKVVKSIIHFANEANMETVAEFVHSKEVYDKLEELGVDYMQGYYIAQPAPE 626


>gi|126700369|ref|YP_001089266.1| putative signaling protein [Clostridium difficile 630]
 gi|115251806|emb|CAJ69641.1| putative signaling protein [Clostridium difficile]
          Length = 900

 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 197/418 (47%), Gaps = 13/418 (3%)

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR+ ++  +  ++D    +      + +IDI K+ K N++  I +GD +L  ++ ++  +
Sbjct: 492 NRRGYMRDVEVLIDY---NSERMLYLFLIDICKFGKFNELFSIEIGDVILKEVSNKLKTI 548

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
               + L R++G+ F  I I   +     D    + +     +++ +    V  +IG   
Sbjct: 549 F--SNYLYRINGDVFLGISI---DKESYLDTLHKVNEVFNSSLSVEDVLFDVKCNIGICQ 603

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSEL 720
           +        ++L+  ++A+ +AK    ++V+ +             I +DL   +E   L
Sbjct: 604 YPYHGENPYDLLEKVQIALEYAKKDVKSNVKVYDKELTEEIYHENNIIKDLKKGLEEQTL 663

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            + Y PI  +     +  EALI+  + + G  S+ E +  AE+  +IK + L++L++   
Sbjct: 664 EVWYQPIFNVSKNCYIKAEALIRLRNKEGGYYSAYEVITYAEKHGLIKDVGLYVLKKACD 723

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                +D+       + +N++ + ++  +    + + I         I +  +E+V+M  
Sbjct: 724 VTTKIKDKNIDFE-QMQLNLSVQQIVHKQCANDILSCIENCGLDKKYICVEVTETVLMET 782

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            E   + L +L+K GIS+ LD+FG+  S ++YL  +P + +K +  L+     ++K+  +
Sbjct: 783 FEIVNVTLDKLKKEGISIALDEFGSGFSSINYLANLPIENLKIDKELVEQITYSKKQFEL 842

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L++I+ +AK     I+A+ +  +  +  +   G + IQ  + + PL  +  ++L+ E 
Sbjct: 843 LKTIVQIAKINGMDIVAEGVETKETLDLVVTSGVNLIQGHYFSEPLSEDKFIELMIEE 900



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 4/139 (2%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TGI NR+ FL +L   L+      N    ++ I I  Y K   V+      D L  + + 
Sbjct: 289 TGILNREGFLIKLQEHLNR----KNNEIVLLYICITNYSKFAPVMSFEKRQDYLTHIVKN 344

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   +K    +AR+S   F + L    +  ++ +    +   +   I +  +++ +T   
Sbjct: 345 LDNYIKSSHFIARISEEGFVLALEENCDKNELLNIEKGISLELLRKIKVENKQVFLTIGY 404

Query: 659 GFASWTSSKITSSEMLKNA 677
           G +     +  +  +L +A
Sbjct: 405 GSSRCVDDRKDAESLLLSA 423


>gi|225019731|ref|ZP_03708923.1| hypothetical protein CLOSTMETH_03684 [Clostridium methylpentosum
           DSM 5476]
 gi|224947576|gb|EEG28785.1| hypothetical protein CLOSTMETH_03684 [Clostridium methylpentosum
           DSM 5476]
          Length = 1009

 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 113/544 (20%), Positives = 209/544 (38%), Gaps = 35/544 (6%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG---PIRNWLPYIHINDRDNFRTI 467
           +  +    ++ +        T  +  I GL              +L  +     +  R  
Sbjct: 458 MTSTAIGAFELNKKEGNTFYTEHLFEIFGLQDDYSTHGMMDNEAFLKKL-----EQTRRF 512

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           LD      R  L   ++V        W  +R+   S+      R IG+A D+T+Q    +
Sbjct: 513 LDEANERDRVWL---YQVSRQQGSPSWARLRVVVESD------RIIGVAEDVTQQIIEKK 563

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I      D LT + NR++F   L  +             +M+ D+D  K IND  G   
Sbjct: 564 KIEYERDYDLLTNLLNRRAFYTLLVELFSQPEQLK--IGAMMMFDLDNLKHINDTYGHDY 621

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN- 646
           GD  +      + +      +++R+SG+ F I L       +I D    +++ +A  I  
Sbjct: 622 GDQYIRCAAAILRKNTPANAVVSRMSGDEFYIFLYGCEEKEQILDTVEQIKQGLAETIFP 681

Query: 647 -LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
              +    V AS G A +     +  ++++ A+ AMY  KH     V  F +  ++ D  
Sbjct: 682 LPGDATFRVRASAGIAWYPDDADSYEQLIRYADFAMYTVKHTVKGQVMQFSIEEYQRDSY 741

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++    +L   ++   +   + PI+     E+   EAL++         S  E + +A  
Sbjct: 742 LLHNKEELNKLIDERLIEYHFQPIVDASTGEVFAYEALMR--SKVDAFKSPLEILTLARS 799

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILIN-IASKDLLDNELCEGMQALISKTL 822
              +  I            ++   +  +P + I IN IA+++L   +  E     + +  
Sbjct: 800 QSKLYEIERLTWFCSMEAFVA--QKQILPDVRIFINSIANQNLSRQDFAEF--EQLYRPH 855

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              +RI +  +E     N   S      +R    SL LDDFGT  +  + L  +    VK
Sbjct: 856 L--NRIVVELTEEEK-PNSAFSSQKQECIRLWQASLALDDFGTGYNGEAMLLCLTPQFVK 912

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S++        R  IL++++   K     +IA+ +    +++ L   G DY+Q  +V
Sbjct: 913 IDMSIVRNVDTDRNRQKILQNLLSYTKERRIKVIAEGVENRGEMETLIHTGVDYLQGYYV 972

Query: 941 ASPL 944
             P 
Sbjct: 973 GMPQ 976


>gi|291528723|emb|CBK94309.1| FOG: EAL domain [Eubacterium rectale M104/1]
          Length = 558

 Score =  306 bits (783), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/538 (19%), Positives = 199/538 (36%), Gaps = 27/538 (5%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D ++  D+  D +  +        L    M+   ++    ++  DR             
Sbjct: 27  DDYLYIIDLKNDTLRISQSAVERFMLPDKFMNDATKHLRTLVYEKDRKLLENHKRKIYDG 86

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           +  R     R+  + N   W+  R   +++  G     IG  N+   ++++         
Sbjct: 87  KEKRYNVLCRLMNSKNLPVWINCRGEVINDEAGKPRYIIGCMNETGTRQRA--------- 137

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DN++G+         + + L  S   + L    + I ID +  IN+V G   G+ +L  
Sbjct: 138 -DNISGL----LGEKEMASYL-YSQPKEKLSGYFIQIGIDDFGIINNVQGQIYGNYILKR 191

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   I E L     +  L  +++ ++ +   +  ++      + + I   I     +   
Sbjct: 192 VAECIAECLSSGQRIYHLVTDKYMLVDMLSKSHDEVVQLFKRIGEKIDEFIVDENYKSIF 251

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLC 712
           + S G    ++    + E  K ++ ++  AK RGG  +  F    ++       I   L 
Sbjct: 252 SISAGVTDISTLAEDAIECRKKSDFSLKCAKKRGGGSLYFFEEEDYKVSLRKNTILSALR 311

Query: 713 LAVENS--ELYLVYHPIIRLMDEEIVGLEALIQ---WDHPKWGNISSSEFMLIAEELCMI 767
            A  N      + Y PI+   D  I+G EAL++           IS  EF+ + E+  +I
Sbjct: 312 SATVNDFEGFEVYYQPILDSAD-RIIGAEALLRFFMHSDEGDEMISPVEFIPLLEKSRLI 370

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  F+L   A+     +         + IN++   ++   +   + + I      P  
Sbjct: 371 IPVGEFVLNEAAKMCREMQQYIAD--FRVNINVSYIQIMRGMMANKILSAIQANNLRPES 428

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +ES  M           +L +  I   +DDFGT  S L Y+  +  D VK +   
Sbjct: 429 ICIEMTESGFMDMTPCFCSFRKKLDENNIQFIIDDFGTGYSNLRYISEMNPDYVKIDKDF 488

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              +  +EK   + R II M  ++   I  + I  E     +  +  DY+Q      P
Sbjct: 489 TAMAMRSEKDHELFRKIIEMVHSVNIKICIEGIEKEEWACAMKEIHVDYMQGYLYGRP 546


>gi|160938010|ref|ZP_02085367.1| hypothetical protein CLOBOL_02903 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439004|gb|EDP16759.1| hypothetical protein CLOBOL_02903 [Clostridium bolteae ATCC
           BAA-613]
          Length = 701

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 176/433 (40%), Gaps = 24/433 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  E +   A  D+L+G+ NR+SF+      L  S     +   ++  DI+  K++N  
Sbjct: 288 RRLYERLEYEAAHDSLSGLLNRESFV-HFRNDLMRSGKA--VSCGIVAGDINDLKQLNRD 344

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G + GD  +      +         + RLSG+ F I+ +       +            
Sbjct: 345 YGQSRGDMTIKEAASVMASSFA-GASIFRLSGDEFIIVSLESAYEEFMERVG-------K 396

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           M   L  R      S+G   W         ++++AE  M   K               + 
Sbjct: 397 MEWMLDSRTPN-GVSLGCT-WEEHLADFDRLMRHAEELMLVNKQ----IYYKDSSQERKH 450

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                   L   +E     L   P    +  ++   EAL+++      +     F+ + E
Sbjct: 451 YSPEYLNRLLQDMEEGCYRLCLQPKYNPLTGKVCSAEALVRYRAAGTESTQPLNFVPLLE 510

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +I+ ++ +MLE++ + +  W+++     I + +N +   LL+ +L   +  +  +  
Sbjct: 511 KTKLIRYLDFYMLEQVFKLLSDWKERGREL-IPVSVNFSRITLLERDLFRVLTDMQKRYH 569

Query: 823 YSPSRIKLSFSESVVMGNPER-SRLLL-GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                + +  +ES  +G+ ER     +  +LR+ G  ++LDDFG   + +S L  + FD 
Sbjct: 570 IPARLVMIEITES--IGDIERKVIESIGSKLREAGFRISLDDFGANYANMSILSIMQFDE 627

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK + SLM      +    +++ II M  +++   +A+ +  +  ++ LT  GC  IQ  
Sbjct: 628 VKLDKSLMDDLVENQTNQTVVKCIIDMCHSLQVECVAEGVENQEQLELLTSFGCTAIQGY 687

Query: 939 HVASPLGFNSILK 951
           + + PL      +
Sbjct: 688 YYSRPLEIAEFER 700


>gi|325125687|gb|ADY85017.1| Sensory box/GGDEF family protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 508

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 91/515 (17%), Positives = 193/515 (37%), Gaps = 21/515 (4%)

Query: 434 IATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
           +  +L ++   +   +  +   ++H +D         +F  +   +     R +    + 
Sbjct: 1   MCRLLRISREDLIANLDKSMFGFVHPDDIGRMAYFGKNFAAHTDEKYDVFLRWKTPKLED 60

Query: 493 HWMIIRIRPMSNSNGDILRYIGIANDITE-----QKKSLEGILCNAFQDNLTGIPNRQSF 547
           + +          +G  L +    +D+ E     Q           +QD LT +PNR+ F
Sbjct: 61  YHIFHSWANHVLVDGVSLGFF-FYSDMEESGKNNQILDTHYQKYEMYQDRLTNLPNRR-F 118

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L+               +P  M ++I      +++ G+  GD +L  L+  +   +K   
Sbjct: 119 LEIFGMEEVAKLRLAKKQPVCMTLNIAGMSVYSNLYGLKKGDQLLRELSELLVSEIKEG- 177

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +     +RF I+ ++E    KI +                 + + +  S+         
Sbjct: 178 HVYYNKDDRFLILTVAEGIDEKIKEIHEKFVNLAK------NKAVDLQFSLYQIL--DDD 229

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-IKEDLCLAVENSELYLVYHP 726
                + + A  AM         +V+ +  +            +   A+    L   + P
Sbjct: 230 QNIMMITQRANQAMKEIGLDRRVYVKKYDPAVEEDLEESYFLNNFSRAMTEGWLTAYFQP 289

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           I    D +    EAL +W  P+ G +S + F+ + E+  +    +++ML  +   +  W+
Sbjct: 290 ICSAKDGKTASYEALARWQDPEKGLVSPAAFIPVIEKHYLTYYSDMYMLWEVVAKLRQWK 349

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           ++       + +N+A +D     L + +  L++    S S IK+  +E  +  N  R + 
Sbjct: 350 ERGLDLK-PVSVNLAHEDFEMPNLVKKINDLVTGAGLSWSLIKIEITERDLSNNTSRLKE 408

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904
            + +LR  G  + +DDFG+  S L+ L    FD VK +   +    +      ++  I  
Sbjct: 409 QIDQLRSYGFEVWMDDFGSGYSSLNALNDYSFDLVKIDMVFVRHLDDGQLNRFLIPEITK 468

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           +A  +   ++A+ +  E     L   GCD +Q   
Sbjct: 469 VAHKLGLKVLAEGVEKEEQRDFLREAGCDLLQGFF 503


>gi|186684616|ref|YP_001867812.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nostoc punctiforme PCC 73102]
 gi|186467068|gb|ACC82869.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nostoc punctiforme PCC 73102]
          Length = 406

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 141/308 (45%), Gaps = 6/308 (1%)

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
           +      +G   + +   + +E+L      +              R+++      +++  
Sbjct: 89  DFRQGMDMGADDYITKPFSRAELLSAIMNRLEKYATLKKYLSTQTRINNLSPKMQLLEIC 148

Query: 711 LCLAVENS---ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           L  A++     E  + Y PI+ +   +IV  E+L++W  P+ G +  +EF+ +AE   +I
Sbjct: 149 LHRAIKQHKFQEFEIYYQPIVDIASGKIVAAESLLRWQSPELGIVYPTEFIPLAESTGLI 208

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I   +L+ + + I  WRD      + + +N+++ +    +    +   I+     P  
Sbjct: 209 VPIGKSVLKSVCKQIKIWRDTGIN-SLVVTVNLSAIEFNQPDFINKIVNFITINNVQPDD 267

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +ES++M +   +   + +L+ +GI + +DDFGT  S L YL  +P +T+K +   
Sbjct: 268 LELELTESMIMQDVNSAIATMSKLQSLGIKIAIDDFGTGYSSLIYLKNLPINTLKIDRYF 327

Query: 888 MTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    +  ++ AI +++I M  N+   +IA+ +  E ++  L +  C+ +Q    + PL 
Sbjct: 328 IHNVANDTQKSAITKALIQMGHNLNLNVIAEGVETEAELAFLRQQNCNSMQGFLFSPPLP 387

Query: 946 FNSILKLL 953
                  L
Sbjct: 388 AAEFESFL 395


>gi|119471019|ref|ZP_01613578.1| response regulator [Alteromonadales bacterium TW-7]
 gi|119445859|gb|EAW27140.1| response regulator [Alteromonadales bacterium TW-7]
          Length = 668

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 185/414 (44%), Gaps = 12/414 (2%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +F  +L          +N   TV+ I I K++ I D+L      +    L + +      
Sbjct: 252 AFYQQLNEY-----ESENTSYTVIFIGIAKFELIADLLDYQSAYEFTHLLAKVLHNTFGE 306

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              + +   N+F + +   +N   +           +  I    + +++     +  +  
Sbjct: 307 KVRMCQKHSNQFMLSVPHASNDATLLAALSKTMALFSDAIPQRYKGMSLELYGVYGIFPE 366

Query: 666 SKITSSEMLKNAELAM-YHAKHRGGNHVESFRV-SSFRSDRVMIKEDLCLAVENSELYLV 723
             ++  E++ +  L M Y AK +            +       +   L  A++N E  L 
Sbjct: 367 DVLSGKELINHLSLNMNYLAKKQQRFFTRFDAELVNDYRKNFELSRLLFKAIDNEEFSLC 426

Query: 724 YHPIIRLMDEEIVGLEALIQWDHP-KWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           + P I L   ++ G E LI+W  P K+G +S + F+ I+E    I AI+ F++ +  + +
Sbjct: 427 FQPKIDLKTHKVSGAEVLIRWYEPTKYGWVSPALFIPISECDGQIIAISRFVISQSFKQL 486

Query: 783 ISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
             W  Q       + IN++++ +  D E  + M   +++   S S I+   +E+ +M + 
Sbjct: 487 KQWNMQKVEVG-KLAINLSARQIKEDPEWIDFMLESLNENNLSASNIQFELTETYLMDDL 545

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAIL 899
            + +L + RLR +G  + +DDFG   S L+YL  +  D +K +  L++G     +  +++
Sbjct: 546 TKCQLQITRLRSLGFEVQIDDFGIGYSSLAYLSKLSIDGIKLDKELISGLDSSLEMQSMI 605

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           R+I+ M+ ++   +IA+ +    + K + R+GCDYIQ  + + PL  +     L
Sbjct: 606 RNIVRMSHDLNLKVIAEGVETAHECKLVERLGCDYIQGFYFSRPLLADEFYDYL 659


>gi|146278902|ref|YP_001169061.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557143|gb|ABP71756.1| diguanylate cyclase/phosphodiesterase [Rhodobacter sphaeroides ATCC
           17025]
          Length = 504

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 104/431 (24%), Positives = 186/431 (43%), Gaps = 12/431 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R   +  L  +L   A         +V+  D  +K+ D  G AV  ++L     R+
Sbjct: 70  GLALRPHVVAALDRVLGERAATGRTT-ACLVLQFDGMEKLLDRHGRAVQSEMLARSAERL 128

Query: 600 GELLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
              L+  D++ARL G    + L      +   +   A  ++ ++A PI++    + VT S
Sbjct: 129 CSALREGDVVARLEGGGLAVALYPVRRLDLESLVRLASRLQSALAAPISIDGSRLYVTCS 188

Query: 658 IGFASWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
           IGF+       T+S   +L  A++A   A   G   V +F     R        +E L  
Sbjct: 189 IGFSL-PGQTETASGKALLDAAQVAADEAVRNGPGAVRAFAPGMARKRADRDAFREVLEA 247

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++  ++   + P IR +D  I G E L +W HP+ G I   EF+   EE  + + +   
Sbjct: 248 ALDGGQIRAWFQPQIRAVDGGIGGFEVLARWQHPERGLILPGEFLPAVEEAGLSERLGEV 307

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ML +    +  W       P  + +N ++ +L +  L E ++  I +    PSR+ +   
Sbjct: 308 MLFQAFSALRQWDRDDLRVP-SVAVNFSASELRNPRLVERLKWEIDRFDLLPSRLSVEIL 366

Query: 834 ESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TG 890
           E+VV     +     +  L  +G  + LDDFGT  + ++ +       +K + S +    
Sbjct: 367 ETVVAEGASDVVVHNIAGLAALGCGIDLDDFGTGHASITTIRRFALRRLKIDRSFVTRAD 426

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           S   +  +L +II MA  +    +A+ +    ++  LTR+GC ++Q   +A P+      
Sbjct: 427 SDSNQRTMLAAIISMASQLGLETLAEGVETPGELATLTRLGCGHLQGYGIARPMPLADAT 486

Query: 951 KLLKERFPLVK 961
             L  R  L +
Sbjct: 487 DWLAARKELFR 497


>gi|160893948|ref|ZP_02074727.1| hypothetical protein CLOL250_01503 [Clostridium sp. L2-50]
 gi|156864326|gb|EDO57757.1| hypothetical protein CLOL250_01503 [Clostridium sp. L2-50]
          Length = 578

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 201/566 (35%), Gaps = 51/566 (9%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT-----------------I 467
           RD +    ++                     ++ +D++  +                  +
Sbjct: 36  RDAIYFYANLQERF-YTIEENDILPDE----LNPDDKNLLKAFCDCTCIEETEKNKMCNL 90

Query: 468 LDSFVGYRRGRLQYE-----FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                   +  ++ +       +     +   M +      +  G I  Y+G+   + +Q
Sbjct: 91  YRQIEQGTKEPIKMDDLETWVHLETRSGKKALMAVLCYLEKDEKGLIREYVGMIRIMRKQ 150

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +     I+ +   D      N   FL ++       A         +  D+ ++K IN+ 
Sbjct: 151 ELENREIVTSFSNDK-----NPAFFLKKIARF---QAEHPEREYAYIQFDVRRFKYINEK 202

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD++L  +   +  +     +  RLS + F  I+   N+  +I +F   + + I 
Sbjct: 203 YGSDTGDNILRYIYDTLDVMCDKEHLHCRLSADVFQ-IVTYYNSREEIMEFIDKLDEKIR 261

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSF 700
                   +I ++ + G      S     +    A LA    K             + + 
Sbjct: 262 RY-----GDIKLSITYGVNIVPGSSTAYRKHGDEAGLARAEGKRTILNKVVFYEDTLMNH 316

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHP--IIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 I+E    A+   E  +   P         +IVG EAL++W        S  EF+
Sbjct: 317 VKQTGAIEEVEEEALRREEFQVYLQPKYQYDRSHAKIVGAEALVRWIDANGKCKSPMEFI 376

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + E    I  ++ FM E + + I  W D     P+ I +N++   L   ++   ++ LI
Sbjct: 377 PVFEANGFIYKLDCFMWEMVCKVIRRWLD-TGRQPLPISVNVSRTYLQKEDVAGYIKNLI 435

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K        +L  +E+    N E     +  L++ G +L +DDFG+  S L  L   PF
Sbjct: 436 DKYQIPMELFQLEITETT--ENAESL-SYINSLKQAGFTLLMDDFGSGYSSLCMLKNTPF 492

Query: 879 DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +     +++   I+  +I M+ ++  +IIA+ +        L   GC   Q
Sbjct: 493 DVLKMDRQFLDECLDSKQGETIISHVISMSNDLGLSIIAEGVENRGTADFLYDNGCSVSQ 552

Query: 937 DSHVASPLGFNSILKLLKERFPLVKN 962
             + + P+       +L E+    + 
Sbjct: 553 GFYFSKPVPIPEFEHMLDEQQTEQQR 578


>gi|288871427|ref|ZP_06117550.2| putative reSponse regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Clostridium hathewayi DSM 13479]
 gi|288863521|gb|EFC95819.1| putative reSponse regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor
           [Clostridium hathewayi DSM 13479]
          Length = 441

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 158/391 (40%), Gaps = 7/391 (1%)

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ + + +++  N + G   GD +   +   +   L   + +A +    + +++    
Sbjct: 42  YALISMKVKRFRIFNRMFGREAGDRLTAMIYDCVESWLNPGEYIAHIHAGYYLLLVHISK 101

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM---- 681
           +   I  + I +   I       E+   V    G     S          NA++      
Sbjct: 102 DYDDIFHYTIDINTRIRD-WPYGEQYGKVYMGYGIFLLGSDPPDFLTAQYNADICRTESS 160

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                     V     +        +++D   A+E+ +  L   P + L   E+   EAL
Sbjct: 161 ESHLRNSHMEVYGLTYNDTNLGNYNMEQDFQPALEHEDFKLYLQPKVNLRTGEVTEAEAL 220

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W +P+ G I  S+F+   E+  +I  ++L+M E + R I  W  Q     I I +N++
Sbjct: 221 VRWINPEKGMIPVSDFLPELEKNGLIGDLDLYMFEHVCRTINRWIKQY-NKKIKISVNLS 279

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           S         +  + +  K       I+    ES+V+   +  ++++ +L   G S +LD
Sbjct: 280 SNMFNYRYFLDLYKQVYEKAPCPKDCIEFELLESIVLNQIDLVQVVVKQLYHYGFSCSLD 339

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           DFG+  S  S L      T+K + SL    S  +   ++R I+  AK +    +A+ I  
Sbjct: 340 DFGSGYSSFSVLTTTELKTLKIDRSLFCNYSDPRERVLVRHIVETAKELNLKTVAEGIET 399

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  ++ L ++GCDYIQ      P+      +
Sbjct: 400 KEYVEFLKKLGCDYIQGFIFYKPMPVEEFER 430


>gi|218663015|ref|ZP_03518945.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhizobium etli IE4771]
          Length = 281

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 126/268 (47%), Gaps = 3/268 (1%)

Query: 687 RGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
            G N    +         +R+ ++ DL  A+E  EL L Y P + L    ++G EAL++W
Sbjct: 1   SGRNSFRFYSKDLTASAEERMRLESDLRRAIERGELELHYQPKVLLDSGAMIGSEALLRW 60

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
            HP  G I    F+ +AE+  +I  +  ++L    +            P  + IN++ K 
Sbjct: 61  RHPDMGMIPPVRFIPVAEDTGLIVELGRWVLREACQTAAELNAD-GRIPHKVAINLSVKQ 119

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
                L + +  ++ +T      +++  +ES+++   + +  +L  LR +G S+ +DDFG
Sbjct: 120 FQSAGLIKSIAEILEETGCRAEWVEIEITESLLLDQKDETLHMLSELRSMGFSIAIDDFG 179

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
           T  S L+YL   P DT+K + S +  + ++   ++++I+ +A+ +  +++A+ +      
Sbjct: 180 TGYSALNYLARFPIDTLKIDRSFINSADKRNEELVKAILSIARCLGQSVVAEGVETAEQA 239

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKL 952
             L   GC   Q    +  +    I+ L
Sbjct: 240 AFLAANGCGTAQGFLYSKAVPKTEIMAL 267


>gi|313904124|ref|ZP_07837503.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313470926|gb|EFR66249.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 747

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 165/417 (39%), Gaps = 15/417 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR+ F+      +     + ++    + +DI    + N++ G   G+ +L+ +
Sbjct: 198 DELTGLLNRKYFVRNAERRIKSGDEEGDIYF--LSLDIKNMSRYNEICGYTEGNYLLMRI 255

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             R+ +      +++R   + F ++   E     + +        +     +      V 
Sbjct: 256 AARLKKEF-PKGLVSRFDEDHFYVMAGREETDQALMN--------LTENPLVGSTGKEVQ 306

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
             IG   +             A +A  + +        + ++      R  + +    A+
Sbjct: 307 MKIGVYPYVV-GDAVGTACDRASIACKNTEKGKLVRWYNRQLKEDYEFRQYLLDHFQDAL 365

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  E  + Y PI+RL   E    EAL++W     G I   +F+ + EE  +   ++L+++
Sbjct: 366 KEEEFVVYYQPIVRLYSGETCSEEALVRWIDKTRGMIPPGQFIPLLEENNLSADLDLYVI 425

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
             + ++    R+        + +N++  D + +++   +  ++ ++     R+ +  +ES
Sbjct: 426 RHVVQEFAIKRESGL-VNTPVSVNLSRMDFISHDMPALISEILEESHIPHDRLIIEITES 484

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
                 E    +L    + G  + +DDFG+  S L+ L    FD VKF+   +    E  
Sbjct: 485 SFAMGNELLTGVLNEFHRRGFRVWMDDFGSGYSSLNLLAEFRFDMVKFDMRFVRNLAEGS 544

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               IL  ++ +  ++    + + +      + L ++G   IQ    + P   + I+
Sbjct: 545 TCQMILEKMVELVDSLGIGTLIEGVENPEQRELLRQIGGQRIQGYLYSKPRPLSQII 601


>gi|304398725|ref|ZP_07380596.1| diguanylate phosphodiesterase with GAF sensor(s) [Pantoea sp. aB]
 gi|304353672|gb|EFM18048.1| diguanylate phosphodiesterase with GAF sensor(s) [Pantoea sp. aB]
          Length = 594

 Score =  305 bits (781), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 114/486 (23%), Positives = 212/486 (43%), Gaps = 27/486 (5%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRY---------------IGIANDITEQKKSLEGILCNA- 533
                      P+   +G IL                 + I   ++    S      +A 
Sbjct: 105 GSPFIRFYAGVPLKTRDGMILGTLCVTDTQPQAFASEQVTILTLLSTLVMSFLEAWHSAG 164

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D +TG+PNRQ  +  L  +     T       +  ID+ +  ++   +G+   + +L 
Sbjct: 165 FTDPVTGLPNRQRLIRDLQYLALAGDTTPRRLVLIDCIDMSRAYELARTMGMTPVESLLK 224

Query: 594 SLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
            +   +   L+    +++  ++  RF  IL   ++ L  A  A  +    A         
Sbjct: 225 DMATLLPLRLRPAVGEMIYTVATGRFA-ILTRADSRLSAAWVAGRLEGISAD--MDEGLS 281

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKED 710
           + +T   G   + +  + +SE+L+ A  A+  A  RG  +   +    + RS+  M+  D
Sbjct: 282 VALTPHTGETGFVAGHLPASEILRRAVSALNEAVGRGLPSQCFNIASETQRSEDFMLMTD 341

Query: 711 LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           L  A  EN+ LY+VY P I L   + VGLEALI+W HP  G +S + F+ +AE+  ++  
Sbjct: 342 LKTALRENTGLYMVYQPKICLQSGKPVGLEALIRWQHPSRGELSPAAFIPLAEQTDLLSV 401

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           + ++++++    +   R+     P+   IN++ +D         +++ + K+    S + 
Sbjct: 402 LTIWIIDQAVERLSRLRNNCIQLPLT--INVSVRDFAREGFASALESKMLKSKLPTSLLG 459

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+  +     +   L  LR+ G  ++LDDFG   S +SYL  +P D +K + SL++
Sbjct: 460 IECLETERILESPTALRGLEMLRERGFKISLDDFGAGYSNISYLRRMPLDVIKLDRSLIS 519

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             +       I RSII M K ++ T++A+ +     +  LT  GCD  Q    + PL   
Sbjct: 520 ELSSDTASRIIARSIIAMLKELDYTVVAEGVECPDAVSSLTEYGCDQAQGYFYSKPLREE 579

Query: 948 SILKLL 953
           ++   L
Sbjct: 580 ALDHWL 585


>gi|126724911|ref|ZP_01740754.1| Putative Cyclic-diGMP cyclase/phophodiesterase [Rhodobacterales
           bacterium HTCC2150]
 gi|126706075|gb|EBA05165.1| Putative Cyclic-diGMP cyclase/phophodiesterase [Rhodobacterales
           bacterium HTCC2150]
          Length = 497

 Score =  305 bits (781), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 196/430 (45%), Gaps = 10/430 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +P  +  +D L+  L+       L    +V+DID + K+N  LG A G+DVL  +
Sbjct: 56  DALTDLPQPKILVDLLSHTLEN-KHKTGLNTACIVVDIDGFTKLNTSLGQARGNDVLKRI 114

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + RI   ++  D++ RL  + F I L      +          ++KS+  P+NL    I 
Sbjct: 115 SDRIVAAVREEDVVVRLENDCFAIALDPVYKVDLESTLSVVRHIQKSVHDPMNLAGSSIA 174

Query: 654 VTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
           ++ S G+   + S   T   +++ A+ AM  A+  G   +  +        +    + ++
Sbjct: 175 ISISSGYCLGSGSPENTGESLVQAAKNAMKEARRNGAGGIRGYSSDLSIRHKTRSILNDE 234

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A++  ++   + P I  +  E+VG EAL +W HP+ G + +++F+   +   +   +
Sbjct: 235 VTEALKRGQIIPWFQPQISTLTGEVVGFEALARWLHPRRGILQAADFIPAIQSAGLFVQL 294

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ML +    +  W+D  +     + IN++ ++L +  L E +   + +   SP R+  
Sbjct: 295 GEMMLTQSLSAMQKWQDVGHPVD-RVGINLSDQELCNPRLLEQINWELDRFGMSPDRLNF 353

Query: 831 SFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              E+V+    +      +  L   G ++ LD FGT  S ++ L   P   +K + S + 
Sbjct: 354 EVLETVLADPKDINISNNIRELAASGCNIDLDCFGTGHSSITSLRQFPIKRIKIDKSFVK 413

Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               +R    ++R+I+ +A  ++   +A       ++K L+ MGC+++Q   +A  +  +
Sbjct: 414 NIHIERGQKNMMRAIMNLADQLDIQALADGAEDIEELKLLSEMGCEFVQGFCIARAMPAD 473

Query: 948 SILKLLKERF 957
             L  L    
Sbjct: 474 DALTWLTSYN 483


>gi|163733765|ref|ZP_02141207.1| EAL domain protein [Roseobacter litoralis Och 149]
 gi|161392876|gb|EDQ17203.1| EAL domain protein [Roseobacter litoralis Och 149]
          Length = 473

 Score =  305 bits (781), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 182/428 (42%), Gaps = 10/428 (2%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  F D +      +  D  +      I+ID +  + +  G    D +  +   RI  + 
Sbjct: 39  RDDFQDIVLQRFKDARADGLISAA-FQIEIDDHTALVERYGQTAADLISKTSGDRIVAVT 97

Query: 604 KFPDILARLSGNRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           +  D +  L   ++ + L      +       A  ++ ++  PI +    + VT+S+GF 
Sbjct: 98  RDRDAVTHLDTFKYAVCLEPVLRMDLELCIQLAGRIQAALEEPIPVDGISVHVTSSVGFC 157

Query: 662 SWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENS 718
             T     +    L  A  A+  A   G   V ++     R   +  ++  ++  A+E  
Sbjct: 158 QQTKVISRSGDAWLAAAGHALREAHLNGPGAVRAYSDKMQRKSEIRAEQREEVVQALEKG 217

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           ++   + P I      + G EAL +W+HP  G +S + F+   E+  M++ +   M+   
Sbjct: 218 QIRPWFQPQISTDTGLVTGFEALARWNHPNRGMVSPAAFLTAIEQAGMLEKLAEVMMFHA 277

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              + +W       P  + +N A  +L + +L + +   + +   +P R+ +   E+VV 
Sbjct: 278 FTALKAWDSAGVHVP-QVGVNFAGPELSNPKLVDKITWELDRFDLAPERLAVEVLETVVA 336

Query: 839 GNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKR 895
            +P+ +    +  L ++G  + LDDFGT  + +S +       +K + S +       ++
Sbjct: 337 NSPDDTITRNINGLSRLGCRIDLDDFGTGHASISSIRRFSVSRIKIDRSFVIKADRDPEQ 396

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             ++ +I+ MA+ +E   +A+ +    +   L ++GCD++Q   +  P+ F+  L  +  
Sbjct: 397 QRMISAILTMAERLEVETLAEGVESAGEHALLAQLGCDHVQGFGIGKPMPFDQTLDWIAN 456

Query: 956 RFPLVKNT 963
               ++ T
Sbjct: 457 HNAKLQAT 464


>gi|23010389|ref|ZP_00051094.1| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 241

 Score =  305 bits (781), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 122/237 (51%), Gaps = 7/237 (2%)

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + L Y P++ +  + IVG EAL++W HP  G I   EF+ +AE+  +I  +  ++L +  
Sbjct: 1   MMLAYQPVVDVRTQAIVGFEALLRWHHPVEGPIPPGEFVPLAEQTGLIGPLGAWVLRQAC 60

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            +   W+      P+ + +N++     D  L   +   +S+T  +P R++L  +E+V++ 
Sbjct: 61  AEARDWKA-----PLRVAVNLSPVQFRDPGLVTVVDEALSQTGLAPERLELEVTEAVLLA 115

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897
             E +   L  LRK+G+ +++DDFGT  S LSYL   PFD +K + S +   G +    A
Sbjct: 116 ASETNLATLHSLRKLGVRISMDDFGTGYSSLSYLQRFPFDKIKIDRSFVQQLGDSHHSAA 175

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I+R++I +  ++    +A+ I  E     L   GC+  Q      P+      +L++
Sbjct: 176 IVRAVIGLGASLGIVTVAEGIETEGQFAHLRAEGCNEAQGYLFGRPVPAAEARRLIR 232


>gi|288933106|ref|YP_003437165.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Klebsiella variicola At-22]
 gi|288887835|gb|ADC56153.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Klebsiella variicola At-22]
          Length = 668

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 184/431 (42%), Gaps = 14/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   + +  ++ +PN+   L  L   +            ++V+  +  +    VL
Sbjct: 233 RQHDELSIQSTRFPVSELPNKAFLLAMLEQTVARPQ-----SAALIVVACETLQDAAGVL 287

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             +  + +L++L  ++   +    +LA++SG  F I+        +    +  +   I  
Sbjct: 288 KESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEPWQAVTLSKQVLTIINE 347

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++   AS+G A +  + +++ +  + A  A   A+ +G N +E F        
Sbjct: 348 RLPLHGLQLRPYASVGIAMF-HAGLSAEQFYRRAVSAAVTARRKGKNQIEFFDPEQMEKA 406

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+  A++N +  +   P +     EI G E L++              +   
Sbjct: 407 QRRLMEEHDIMTALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPSLIERI 466

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  +++E   R + +W+ Q  M  + + +N++   LL+++  E M  LI++ 
Sbjct: 467 ESCGLIIPVGYWVMEEACRQLAAWQSQGIM--LPLSVNVSLLQLLEHDRGEEMLKLIARY 524

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P  + L  +ES  M +P+     L  LR+ G+ + LDDFG   + L  L     +P 
Sbjct: 525 RIAPGTLILEVTESCRMDDPQDVMARLRPLREAGVQIALDDFGMGYAGLHQLQQMKALPV 584

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     + ++++ ++I +A+ +   I+A+ +  +   + L   G + +Q  
Sbjct: 585 DILKIDKVFI-DMLPEDVSMVPAMIQLARGLSLHIVAEGVENDAQYRWLQAAGVEVLQGH 643

Query: 939 HVASPLGFNSI 949
                L   + 
Sbjct: 644 LFGCALPLEAF 654


>gi|317053643|ref|YP_004118777.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pantoea sp.
           At-9b]
 gi|316952748|gb|ADU72221.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Pantoea sp.
           At-9b]
          Length = 593

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 204/487 (41%), Gaps = 27/487 (5%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGI---------ANDITEQKKSL-------EGILCNA 533
              +       P+ N  G +L  + +         A+ +T  K          E      
Sbjct: 105 GAPYIRFYAGVPLKNREGIVLGTLCVTDTEPHPFSADQVTTLKLLSALVVSFLEAWHSAG 164

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D +TG+PNRQ  +  L  +             +  ID+ +  ++   +G+   + +L 
Sbjct: 165 FTDPVTGLPNRQRLIRDLQFLTASGDNTPRRLVLIDCIDMPRAYELARSMGMGPVESLLK 224

Query: 594 SLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
            +   +   L+    D+L  ++  RF  +L  +N+ L     A  +    A         
Sbjct: 225 DVATLLPLRLRPATGDMLYTVATGRFA-LLTHDNSRLNADWVAGRLEGISAD--LGDGIA 281

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKED 710
           + +T   G  +  +  I + E L+ A  A++ A  RG  +   S    +  +    +  D
Sbjct: 282 VALTTHTGEVAIMTGDIPAQETLRRAVSALHEAIGRGIPSMHFSQAADARHTRDFTLMND 341

Query: 711 LCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           L  A  EN  L+L + P I L     VGLEALI+W HP+ G +S + F+ +AE+  ++ A
Sbjct: 342 LATALRENKGLWLAFQPKICLHSGSPVGLEALIRWRHPQRGELSPTLFVPLAEQTELLSA 401

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++ +R    +   R       + + INI+ +D       + ++A + K     S + 
Sbjct: 402 LTTWVTDRAISRLARLRSSCLQ--LPVTINISCRDFSREGFADALEAKMIKAKLPTSLLG 459

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+  +     +   L  LR  G  ++LDDFGT  S +SYL  +P D +K + +L++
Sbjct: 460 IECLETERILESPAAMEGLEMLRLRGFGISLDDFGTGYSNISYLRRMPLDVIKLDRTLIS 519

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             +       I RSII M K ++ T++A+ +     +  LT  GCD  Q    + PL   
Sbjct: 520 EISSDTASRIIARSIITMLKELDYTVLAEGVENAETVTALTEYGCDQAQGFFYSRPLPEE 579

Query: 948 SILKLLK 954
            +   L 
Sbjct: 580 ELDMWLS 586


>gi|290511900|ref|ZP_06551268.1| phosphodiesterase [Klebsiella sp. 1_1_55]
 gi|289775690|gb|EFD83690.1| phosphodiesterase [Klebsiella sp. 1_1_55]
          Length = 668

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 184/431 (42%), Gaps = 14/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   + +  ++ +PN+   L  L   +            ++V+  +  +    VL
Sbjct: 233 RQHDELSIQSTRFPVSELPNKAFLLAMLEQTVARPQ-----SAALIVVACETLQDAAGVL 287

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             +  + +L++L  ++   +    +LA++SG  F I+        +    +  +   I  
Sbjct: 288 KESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEPWQAVTLSKQVLTIINE 347

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++   AS+G A +  + +++ +  + A  A   A+ +G N +E F        
Sbjct: 348 RLPLHGLQLRPYASVGIAMF-HAGLSAEQFYRRAVSAAVTARRKGKNQIEFFDPEQMEKA 406

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+  A++N +  +   P +     EI G E L++              +   
Sbjct: 407 QRRLMEEHDIITALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPSLIERI 466

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  +++E   R + +W+ Q  M  + + +N++   LL+++  E M  LI++ 
Sbjct: 467 ESCGLIIPVGYWVMEEACRQLAAWQSQGIM--LPLSVNVSLLQLLEHDRGEEMLKLIARY 524

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P  + L  +ES  M +P+     L  LR+ G+ + LDDFG   + L  L     +P 
Sbjct: 525 RIAPGTLILEVTESCRMDDPQDVMARLRPLREAGVQIALDDFGMGYAGLHQLQQMKALPV 584

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     + ++++ ++I +A+ +   I+A+ +  +   + L   G + +Q  
Sbjct: 585 DILKIDKVFI-DMLPEDVSMVPAMIQLARGLSLRIVAEGVENDAQYRWLQAAGVEVLQGH 643

Query: 939 HVASPLGFNSI 949
                L   + 
Sbjct: 644 LFGCALPLEAF 654


>gi|297182739|gb|ADI18894.1| FOG: eal domain-protein [uncultured delta proteobacterium
           HF0010_08B07]
          Length = 457

 Score =  304 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 142/267 (53%), Gaps = 11/267 (4%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +       + ++ DL  A+++ EL L Y PII      + G EAL++W HP  G IS  +
Sbjct: 183 MFKQALYTINLENDLDKALKDEELVLFYQPIIEANTGRLAGFEALMRWIHPDRGMISPGD 242

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQAN---------MPPIFILINIASKDLLD 807
           F+ +AE    + A+  + +E+  +D+   RD               +F+ +N +S+D LD
Sbjct: 243 FIPVAERSGQMVAMTHWAVEQACQDLCYLRDLFLASVALSANVSEKMFMSVNFSSRDFLD 302

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +EL + +Q L+       + +K+  +ESV++ +P      L   R+ G S+ +DDFGT  
Sbjct: 303 SELMDKVQQLLKNYDLPKNSLKIEVTESVLVSSPREVTNALNNCREHGASVAIDDFGTGY 362

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P DT+K + + +    + E+ +A++ SII +A+ ++   +A+ +  E+D +
Sbjct: 363 SSLSYLQTLPADTLKIDQAFIRPMHNDERHMALVESIIHLAQRLDMVTVAEGVETELDAQ 422

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKL 952
            L  + CDY+Q  + A P+    I++ 
Sbjct: 423 SLASLQCDYLQGYYFARPMPAQDIIRW 449


>gi|329849483|ref|ZP_08264329.1| HAMP domain protein [Asticcacaulis biprosthecum C19]
 gi|328841394|gb|EGF90964.1| HAMP domain protein [Asticcacaulis biprosthecum C19]
          Length = 788

 Score =  304 bits (780), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 202/443 (45%), Gaps = 25/443 (5%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT            A  D  T +PNR SF D +  + D S         V+ I I++Y
Sbjct: 347 RDIT----------RLAKTDMATSMPNRSSFEDHIAELEDQSEAG----IVVVAIGIERY 392

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
             I  V G A    ++  L + I   L     +ARLS +  G+ L    ++ +    A A
Sbjct: 393 AHIRAVWGGAYAHTLVSRL-QTILARLFDKAFIARLSADTLGLCLAPC-DAEQAIPLARA 450

Query: 637 MRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
           +   +   I +  ++ + V  S G    +  + T+ EM++ A +A+  A+    G  +  
Sbjct: 451 IAARLVKRIKVTDDQSLDVNVSQGVYHVSHVRPTADEMVERALIALDQARAAKTGIALFD 510

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
            R+ S  +D +++ + L  A+++  L + Y P     +  I G+EAL++W+HP+ G +S 
Sbjct: 511 PRIYSELADTLLLTDQLFAALQSKALTVWYQPKFSYREGRITGVEALVRWNHPERGYVSP 570

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IAEE   I+ + L + + +  D    +D        I +N + + L D       
Sbjct: 571 QRFVAIAEETGAIRDLTLHVFDTVLEDQRRLKDAGFDLD--ISVNYSGRLLSDEAFNART 628

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++     +   I L  +E+ V+ +P+     +    + G+ ++LDDFGT  S LSYL 
Sbjct: 629 VSMVDT---AVGHICLEITETAVIEDPKIGLAAINTFVEHGVEISLDDFGTGLSSLSYLK 685

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            IP   +K + + +      ++   ++RS I +A  +   + A+ +        L  MGC
Sbjct: 686 QIPAHELKIDRAFIMEIEQGQRDALLVRSTIDLAHGLGMKVTAEGVETATSFTLLQAMGC 745

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D  Q   +A P+ +++++  L++
Sbjct: 746 DIAQGYGIAKPMPYDALIPFLED 768


>gi|167756466|ref|ZP_02428593.1| hypothetical protein CLORAM_01999 [Clostridium ramosum DSM 1402]
 gi|167703874|gb|EDS18453.1| hypothetical protein CLORAM_01999 [Clostridium ramosum DSM 1402]
          Length = 985

 Score =  304 bits (780), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 100/559 (17%), Positives = 221/559 (39%), Gaps = 35/559 (6%)

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIAT-ILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           L +       ++++I  + +  + +    +L     +    +  +        ++ F   
Sbjct: 444 LQMASIKLAGFEYNINTEELFISENFFEVLLKYDVNTSELTMTKF--------KETFEGY 495

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
               V +   + +Y F++   DN   ++ + +R + N N     Y G+  ++T       
Sbjct: 496 KQYIVSHDYSKKEYLFKIPDDDN---YVFVNLRLLVNDN----AYTGVIENVTNTIVEKN 548

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I      D LTG+ NR++F+ R+   L  +  +      ++++D+D  K IND  G  +
Sbjct: 549 VIEYERDHDALTGLLNRRAFI-RIMNSLFENEINKIKIAALLMLDLDNLKYINDNYGHEI 607

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD+ +               I++R+SG+ F +     ++   I      ++++I+     
Sbjct: 608 GDNYISKAAETFVNSTPENTIISRISGDEFFVFFYGYDDENVIKQLINKLKEAISKAFIP 667

Query: 648 --LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                   V AS G A +     +  ++   A+ AMY  K     ++  F ++ + +D  
Sbjct: 668 LADNSNFHVNASGGIAWYPRDSESFEKLQHYADYAMYKIKRTSKGNLTEFNLNDYIADSF 727

Query: 706 MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           + +   +L   +E+  +   + PII   D  I   E+L++   P     +  + + IA+E
Sbjct: 728 LSESKEELNTIIEDRAIQFYFQPIISSKDGTIYAYESLMRSFMPSLK--NPLDILKIAKE 785

Query: 764 LCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +  I             +    +       I IN  S  +L  +  + ++   SK  
Sbjct: 786 EGRLAEIEELTWSSSLETFANHLRNERINKDCKIFINSISNQILSTKKIDELEKEYSKY- 844

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                + L  +E   + +    +     ++K    L LDD+G+  +    L  I    +K
Sbjct: 845 --LKNVVLEVTEVEYI-DENYHQQKAELMKKWQAELALDDYGSGYNSDRILLLISPKFIK 901

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +  ++        +  I+ +I+  A   +  +IA+ I    ++K++ ++  DY+Q   +
Sbjct: 902 IDMDIIRNIDSDPDKCKIVENIVNYAHERDMKLIAEGIETIDELKQVIKLKVDYLQGFLL 961

Query: 941 ASP--LGF---NSILKLLK 954
           A P  L       ++KL++
Sbjct: 962 AKPQYLPPRIQEDVIKLIQ 980


>gi|206580233|ref|YP_002236110.1| putative diguanylate cyclase [Klebsiella pneumoniae 342]
 gi|206569291|gb|ACI11067.1| putative diguanylate cyclase [Klebsiella pneumoniae 342]
          Length = 657

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 184/431 (42%), Gaps = 14/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   + +  ++ +PN+   L  L   +            ++V+  +  +    VL
Sbjct: 222 RQHDELSIQSTRFPVSELPNKAFLLAMLEQTVARPQ-----SAALIVVACETLQDAAGVL 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             +  + +L++L  ++   +    +LA++SG  F I+        +    +  +   I  
Sbjct: 277 KESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEPWQAVTLSKQVLTIINE 336

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++   AS+G A +  + +++ +  + A  A   A+ +G N +E F        
Sbjct: 337 RLPLHGLQLRPYASVGIAMF-HAGLSAEQFYRRAVSAAVTARRKGKNQIEFFDPEQMEKA 395

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+  A++N +  +   P +     EI G E L++              +   
Sbjct: 396 QRRLMEEHDIITALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPSLIERI 455

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  +++E   R + +W+ Q  M  + + +N++   LL+++  E M  LI++ 
Sbjct: 456 ESCGLIIPVGYWVMEEACRQLAAWQSQGIM--LPLSVNVSLLQLLEHDRGEEMLKLIARY 513

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P  + L  +ES  M +P+     L  LR+ G+ + LDDFG   + L  L     +P 
Sbjct: 514 RIAPGTLILEVTESCRMDDPQDVMARLRPLREAGVQIALDDFGMGYAGLHQLQQMKALPV 573

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     + ++++ ++I +A+ +   I+A+ +  +   + L   G + +Q  
Sbjct: 574 DILKIDKVFI-DMLPEDVSMVPAMIQLARGLSLRIVAEGVENDAQYRWLQAAGVEVLQGH 632

Query: 939 HVASPLGFNSI 949
                L   + 
Sbjct: 633 LFGCALPLEAF 643


>gi|270158469|ref|ZP_06187126.1| diguanylate cyclase/phosphodiesterase domain protein [Legionella
           longbeachae D-4968]
 gi|289166697|ref|YP_003456835.1| regulatory protein (GGDEF and EAL domains) [Legionella longbeachae
           NSW150]
 gi|269990494|gb|EEZ96748.1| diguanylate cyclase/phosphodiesterase domain protein [Legionella
           longbeachae D-4968]
 gi|288859870|emb|CBJ13856.1| putative regulatory protein (GGDEF and EAL domains) [Legionella
           longbeachae NSW150]
          Length = 548

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 207/440 (47%), Gaps = 16/440 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   +  D  T +PN   F +++T  ++     +     V+++ ++ +K I+   G   
Sbjct: 109 KLKYESEHDFFTQLPNALLFGEQITQSINKIEKSN--ELAVILLKLNDFKAIHSNFGNFN 166

Query: 588 GDDVLVSLTRRIGELL---------KFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            + VL+   +++ E+L            + +AR+ G+ F ++L   N ++ +      + 
Sbjct: 167 SNSVLIEFVKKLKEMLITSFMLEATMGINSVARVEGDEFALLLPRLNKNINLNKLLNTII 226

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRV 697
            +  +   +    + ++ + G A +  +   +  ++ +A  A++HA K      + +  +
Sbjct: 227 DATNLNFTVDGINVAISTTAGAAIYPDAGEDNVSLINHARTAVFHARKKDKPFAIYNPDM 286

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               +   ++   L  ++EN E+ + Y P + L   +I+G EA+  + H K+G IS+ +F
Sbjct: 287 EDDFTTNRIVMSGLKASIENQEIKIYYQPEVELATGKIIGAEAMGSFVHEKYGLISTEKF 346

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + + E   +I+ +  FML  + + +  W    +   IF  IN++ KD +D +L   +++L
Sbjct: 347 ISLIEGSNLIQQLTSFMLTNVTQQLALWHQAGH--KIFSSINLSIKDAIDKKLPGFIESL 404

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++   +P  + L F E   + + E+S  +L  L ++G+++T+ DF +  S   YL   P
Sbjct: 405 LNENKIAPQYLILEFDERACLSDQEKSIPVLNELSRLGVNITIHDFCSGFSSFIYLVNFP 464

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K   SL+      EK+  ++ +II +A+ +E  + A  +  +   ++L   GC Y 
Sbjct: 465 INRIKIEKSLILNMTKDEKKSKLVEAIIKLAQTLELDVFANGVENQEIREQLQHYGCKYG 524

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q  + +  +     +  L  
Sbjct: 525 QGFYFSHQVSPYEFMAQLNS 544


>gi|222637741|gb|EEE67873.1| hypothetical protein OsJ_25689 [Oryza sativa Japonica Group]
          Length = 1723

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 98/398 (24%), Positives = 173/398 (43%), Gaps = 62/398 (15%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E+ ++ + +   A  D LTG+PNR   LDRL   L L+  D      V+ +D+D++K 
Sbjct: 374 IGERLRAEQRLTHQAMHDALTGLPNRLHLLDRLQDALALAKRDGGPVFAVLFLDLDRFKL 433

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G A GD +L                                              
Sbjct: 434 VNDSIGHAAGDRML---------------------------------------------- 447

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--R 696
                 + +  RE+  + S+G A W     T  E+L++A+ AMY AK +G +    F   
Sbjct: 448 ----ESMWIAGRELFPSGSLGIALWNPRYRTGEELLRDADAAMYRAKAQGHDRCAIFDED 503

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +       + ++ DL  A+ N +    Y PI+RL D E+VG EAL++W H + G +    
Sbjct: 504 MREQAMRSLDLEADLRRAINNRDFVPFYQPIVRLSDGEVVGHEALLRWQHERRGLLLPGA 563

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ + EE  +I+ ++  + E++   +            ++ +N++ +     E  + +  
Sbjct: 564 FLELGEESGLIEQVDWLIYEQVIAGLAQ------GGEGYVSVNVSPRHFRSAEFSDRLFG 617

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+      P R++L  +E  ++ +   +  +L  LR+ GI + LDDFGT  S LSYL   
Sbjct: 618 LLDSCGADPCRLRLEITEVALLDDGPHTLRILQGLRERGIQVQLDDFGTGFSALSYLHRF 677

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTII 914
           P  T+K + S + G     +   R++       +   +
Sbjct: 678 PISTLKIDQSFIAGLHGPEVQSTRAL----HRFDVRAV 711


>gi|224373457|ref|YP_002607829.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589467|gb|ACM93203.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 638

 Score =  304 bits (779), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 169/412 (41%), Gaps = 34/412 (8%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PNR    + L             +  + +++I+ +++IND  G  +GD ++  + +
Sbjct: 253 LTKLPNRIKLNEDLKKE----------KFNLAILNINNFREINDYFGQEIGDKLIYFIGQ 302

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           RI  L K       ++ + F + L            A  + + +  P ++ E EI +T  
Sbjct: 303 RIKNLTK----AYHINIDEFAVPLPYSKKEDNFKFIAN-ILQELEKPYHINENEIILTFR 357

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---FRSDRVMIKEDLCLA 714
            G +           +L  A++A+ +AK R    +    +          + I   L  A
Sbjct: 358 CGMS------KAKENLLTTADIALEYAKRRKEKCLCFCDIKDTIKEFEKNLKILNILVKA 411

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           ++N+ + + Y PI+    ++IV  EAL++ +  K        F+ IA+   +   I   +
Sbjct: 412 IKNNRIKVYYQPIVENKTKKIVKYEALVRIEDEKGNIYLPGSFLDIAKSANLYPEITKKV 471

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
            +         ++        + +N+  +D  + ++   +  LI K    P RI +   E
Sbjct: 472 FKTALETFKDRKEI-------VSLNLDLEDFENEKIRNAVIDLIEKFP-EPQRITIELLE 523

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S  +   + S   +  LR  G+ + +DDFG+  S  SYL     +  K +GSL+      
Sbjct: 524 SENITESKTSIEFMRYLRDKGVKIFIDDFGSGYSNFSYLFNFEVNGFKIDGSLIKNILTD 583

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            K   I+ +++  AK     I+A+ +  E   K++  +  D  Q  +   P 
Sbjct: 584 RKSQMIVETMVAFAKKGGMKIVAEYVETEEIYKKMCELDVDCSQGFYFGKPQ 635


>gi|152964608|ref|YP_001360392.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359125|gb|ABS02128.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 508

 Score =  304 bits (779), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 91/444 (20%), Positives = 175/444 (39%), Gaps = 27/444 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +TG+     F   +       A        ++ + +D ++  N   G A GD VL  
Sbjct: 52  TDPVTGLLTGAGFTAVVAAA-QRGAAHGGHPLALLHLGLDGFRAFNSTHGRAAGDAVLTE 110

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + RR+   ++  D + RL G+ F ++L    +     D A+ +   +  P  +    + +
Sbjct: 111 VARRLRSAVRGGDEVGRLGGDEFAVLL---ADPGAAVDVAVRLLAVLEAPHEVGTARVVL 167

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLC 712
             S+G A        + ++L  AE A+  AK  GG  V  +  S+  +    +   + L 
Sbjct: 168 GVSVGVAHRP-GGQHAEDLLAAAEQAVAEAKAAGGGCVRVWDPSAALARGAELRTAQALH 226

Query: 713 LA-----------VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            A             +  L + Y P + +    + G+EAL++W       +   EF+ +A
Sbjct: 227 RAVAASAAGVAADPADGCLEVHYQPSVDVRSGVVSGVEALVRWRRRDR-LVPPGEFIELA 285

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +   +L R   D       A    + + +N+++  L D  L   ++  + + 
Sbjct: 286 ERHGVIADLGRAVLARSVADAPLLCAAAGR-ALVVAVNVSAPQLRDPALPAAVRGAVER- 343

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E+V++     +   L  L + G  LT+DDFGT  + L+YL   PF   
Sbjct: 344 -LEGRPLVLELTENVLVAEDPGTEAALDALVEAGAHLTVDDFGTGYATLAYLRRRPFTAF 402

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +       +  A++  ++ +A      ++ + +  E   + L  MG    Q   
Sbjct: 403 KIDRSYVRDIESDPRTRALVEGLVLLASATGLGLVVEGVETEGQARLLEGMGAPTHQGFL 462

Query: 940 VASPLGFN---SILKLLKERFPLV 960
            A P        ++  L+ R    
Sbjct: 463 HARPAPLEQACEVIAALRARLDGT 486


>gi|149376412|ref|ZP_01894174.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149359253|gb|EDM47715.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 1249

 Score =  304 bits (779), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 173/428 (40%), Gaps = 15/428 (3%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +K  + +   +  D LTG+  R+ F   L   L            ++++D+ +++ +ND 
Sbjct: 823  RKVYDQLSWASTHDELTGLLGRREFERMLDQQLARREDQR----ALVLLDLRQFRLLNDT 878

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD+ L  +   +   +     LAR SGN F  +L +EN          A+     
Sbjct: 879  AGYQAGDEALRRVADVLRSHVGDGMPLARFSGNEFAFMLPAENALDASRGIVSAIEA--- 935

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            M          ++AS+G A    +   +   LK AE AM  AK RG   V  + +     
Sbjct: 936  MEFVFDSGSYHLSASVGLAPELPALANAERWLKAAEEAMKSAKKRGHGKVMEYSLDEHDH 995

Query: 703  DRV-MIKEDLCLAVENSE----LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             R   I   +    + +E    L       +          E LI         I+  +F
Sbjct: 996  ARQEQIAAKVASLGDLNEERMLLRCQKIIPLHARTSMAAQYEVLISMYGDDGNLITGKDF 1055

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE    ++A++ +++  +   +             I IN++   L D +L E +   
Sbjct: 1056 VRMAERYDRMQAVDRWVVGHMLDWLRD-HAPDPEHMGGICINLSGHSLNDQQLMEFIYDK 1114

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +S+      R+    +E+  + + +     +  ++++G    L DFG+  +   ++  +P
Sbjct: 1115 LSQKDAPIERLWFEITEASAINDIQGISEFIEEMKELGCRFCLGDFGSGPTSFQFMRSLP 1174

Query: 878  FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + +  +   ++E   A+++S++ MA  ++  +IA  +     +  LT +G DY 
Sbjct: 1175 VDLIKLDSAFTSQLNTSETDQAMVKSMVDMAHYMKREVIASRVETRAVLDMLTSLGVDYA 1234

Query: 936  QDSHVASP 943
            Q   +  P
Sbjct: 1235 QGFAIEKP 1242


>gi|262040586|ref|ZP_06013826.1| YhjK like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259042078|gb|EEW43109.1| YhjK like protein [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 657

 Score =  304 bits (779), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 184/431 (42%), Gaps = 14/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   + +  ++ +PN+   L  L   +            ++V+  +  +    VL
Sbjct: 222 RQHDELSIQSTRFPVSELPNKAFLLAMLEQTVARPQ-----SAALIVVACETLQDAAGVL 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             +  + +L++L  ++   +    +LA++SG  F I+        +    +  +   I  
Sbjct: 277 KESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEPWQAVTLSKQVLTIINE 336

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++   AS+G A +  + +++ +  + A  A   A+ +G N +E F        
Sbjct: 337 RLPLHGLQLRPYASVGIAMF-HAGLSAEQFYRRAVSAAVTARRKGKNQIEFFDPEQMEKA 395

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+  A++N +  +   P +     EI G E L++              +   
Sbjct: 396 QRRLMEEHDIMTALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPALIERI 455

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  +++E   R + +W+ Q  M  + + +N++   LL+++  E M  LI++ 
Sbjct: 456 ESCGLIIPVGYWVMEEACRQLAAWQSQGIM--LPLSVNVSLLQLLEHDRGEEMLKLIARY 513

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P  + L  +ES  M +P+     L  LR+ G+ + LDDFG   + L  L     +P 
Sbjct: 514 RIAPGTLILEVTESCRMDDPQDVMARLRPLREAGVQIALDDFGMGYAGLHQLQQMKALPV 573

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     + ++++ ++I +A+ +   I+A+ +  +   + L   G + +Q  
Sbjct: 574 DILKIDKVFI-DMLPEDVSMVPAMIQLARGLSLRIVAEGVENDAQYRWLQAAGVEVLQGH 632

Query: 939 HVASPLGFNSI 949
                L   + 
Sbjct: 633 LFGCALPQEAF 643


>gi|89068159|ref|ZP_01155576.1| diguanylate cyclase, putative [Oceanicola granulosus HTCC2516]
 gi|89046398|gb|EAR52455.1| diguanylate cyclase, putative [Oceanicola granulosus HTCC2516]
          Length = 490

 Score =  304 bits (779), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 183/427 (42%), Gaps = 14/427 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+         L         D       +V+++D ++ + + L  A  D +L  L
Sbjct: 57  DALTGLLRHDGLCRVLDA------EDGAHTRGALVLEMDGWQALEERLERAELDRLLAVL 110

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENN--SLKIADFAIAMRKSIAMPINLLEREIT 653
            +R+   ++  D  AR  G  F + L    +  +      A  +++ +A P+ L +    
Sbjct: 111 GQRLRLAVRGGDHCARFEGPTFAVGLPPSPDLGAAAAERLARRVQEVLAQPLRLGDDAFR 170

Query: 654 VTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            + S+G A     ++  ++ +L+ A LA   A   G   V  +  +          +  D
Sbjct: 171 PSLSLGLALSCDGARADAAALLQAARLAQIEAARAGPGEVRRYGPNMQERVARREVMVRD 230

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   E+ + + P I L  + + G EAL +W   + G +   EF+  A +  +++ +
Sbjct: 231 LSRALAAGEIGVQFQPQIELASDAVTGFEALARWTSAELGPVPPPEFLAAARQAGLVERL 290

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L+   R +  W       P  + +N+++++L D  L + +   +++   +P R+ +
Sbjct: 291 GQTILDEALRALAGWDAVGLPVPA-VAVNLSAEELRDPGLVDRVAFTLARHDLAPGRLTI 349

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+VV      +   L  L ++G  + LDDFGT  + ++ +   P D +K + S +  
Sbjct: 350 EVLETVVSEPDGAAAETLHALARLGCRIDLDDFGTGHASITSIRRFPVDRIKIDRSFVAS 409

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                ++  ++ +I+ MA  +    +A+ +    ++  L  +GC   Q   +A P+   +
Sbjct: 410 VDTEIEQRGMMEAILTMADRLGLDTLAEGVETPEELAALRELGCRQAQGFLIARPMPAEA 469

Query: 949 ILKLLKE 955
               L+ 
Sbjct: 470 ARAWLES 476


>gi|149195343|ref|ZP_01872430.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
 gi|149134535|gb|EDM23024.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Caminibacter mediatlanticus TB-2]
          Length = 691

 Score =  304 bits (779), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 183/411 (44%), Gaps = 32/411 (7%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T + NR  F D L    +           +++++IDK+++IN   G+ VGD+++  + +R
Sbjct: 301 TQLHNRVKFFDNLKNKNNRYKN-------IVLLNIDKFREINSFFGLKVGDELIKEVAKR 353

Query: 599 IGEL-LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           +  L LK+  ++  L  + F ++   + +  ++    +++ K +  P ++ E EI V   
Sbjct: 354 LRNLKLKYHFLIYHLDIDEFALVFSDDLSKEELKSKILSIIKELEKPYSINEEEIIVRFR 413

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS---SFRSDRVMIKEDLCLA 714
            G +              NAE+A+   K    + V  + V        + +   + +  A
Sbjct: 414 AGISKD----------YVNAEIALSQTKELKKDIVFDYEVEGIKENYGENIKWLKKIKDA 463

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E+  +   + PI+   ++ I+  EAL++    +   IS   F+ +A++  +   I   +
Sbjct: 464 IEDDRIVPFFQPIVD-KNKNIIKYEALVRMIDEEGNVISPFFFLDVAKKSRLYSNITKIV 522

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L++  + I           + + INI  +D+ + E+   +   I+K   + + +     E
Sbjct: 523 LDKAIKKISQ-------KNVGVSININLEDIENVEMKNYIINSINKCE-NKNLLTFEIVE 574

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           +  +   + +   +  +++ G  + +DDFG+  +   YL  +  D VK +GSL+      
Sbjct: 575 NEDVRESKEAMEFIKEIKRRGAQVYIDDFGSGYANFDYLLKLSPDGVKIDGSLIKDILDN 634

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +    I+++II  AK      +A+ +  +    +L  +G DY Q  + + P
Sbjct: 635 KNNEIIVKTIINFAKETNLKTVAEFVENKEIFDKLKSLGIDYFQGYYFSPP 685


>gi|238896977|ref|YP_002921722.1| putative phosphodiesterase [Klebsiella pneumoniae NTUH-K2044]
 gi|238549304|dbj|BAH65655.1| hypothetical protein KP1_5220 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 657

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 184/431 (42%), Gaps = 14/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   + +  ++ +PN+   L  L   +            ++V+  +  +    VL
Sbjct: 222 RQHDELSIQSTRFPVSELPNKAFLLAMLEQTVARPQ-----SAALIVVACETLQDAAGVL 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             +  + +L++L  ++   +    +LA++SG  F I+        +    +  +   I  
Sbjct: 277 KESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEPWQAVTLSKQVLTIINE 336

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++   AS+G A +  + +++ +  + A  A   A+ +G N +E F        
Sbjct: 337 RLPLHGLQLRPYASVGIAMF-HAGLSAEQFYRRAVSAAVTARRKGKNQIEFFDPEQMEKA 395

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+  A++N +  +   P +     EI G E L++              +   
Sbjct: 396 QRRLMEEHDIMTALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPALIERI 455

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  +++E   R + +W+ Q  M  + + +N++   LL+++  E M  LI++ 
Sbjct: 456 ESCGLIIPVGYWVMEEACRQLAAWQSQGIM--LPLSVNVSLLQLLEHDRGEEMLKLIARY 513

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P  + L  +ES  M +P+     L  LR+ G+ + LDDFG   + L  L     +P 
Sbjct: 514 RIAPGTLILEVTESCRMDDPQDVMARLRPLREAGVQIALDDFGMGYAGLHQLQQMKALPV 573

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     + ++++ ++I +A+ +   I+A+ +  +   + L   G + +Q  
Sbjct: 574 DILKIDKVFI-DMLPEDVSMVPAMIQLARGLSLRIVAEGVENDAQRRWLQAAGVEVLQGH 632

Query: 939 HVASPLGFNSI 949
                L   + 
Sbjct: 633 LFGCALPQEAF 643


>gi|257469729|ref|ZP_05633821.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
 gi|317063961|ref|ZP_07928446.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
 gi|313689637|gb|EFS26472.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
          Length = 621

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 177/449 (39%), Gaps = 13/449 (2%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I+  I++ K        +   DN++ + +  SF+ +    ++    ++N +  V   DI 
Sbjct: 169 ISRLISDNKIKNLFERLD-QFDNISELLSYSSFIKKAQDHINN--KNENKKLAVFYADII 225

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII--LISENNSLKIAD 632
            +K +N + G   G+  L + +  I           R+  + F  +  +       +++ 
Sbjct: 226 GFKTLNKIYGEEEGNRFLRAFSDFIKANEF-YISACRVYADNFIELFTIPEGVTLEQLSV 284

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             I               +  +    G  +      +    +  A+      K    +  
Sbjct: 285 KFIRDCNGFLQEEAHFHPKCNLGFICGMCAIDDRNESIYSYISKADDVRKSLKPSLTSKS 344

Query: 693 ESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW--DHPK 748
           E F         +  +    +  A+EN        P I ++  EI+G EAL++       
Sbjct: 345 EVFDAPKKALYLIKQERLRTIMTALENKSFIFYLQPKINILTNEIIGAEALVRMTSFDSN 404

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              +   +F+ + EE   I  ++ F+ +++   I   R + N+P   I +N++ +   + 
Sbjct: 405 IPPLMPGDFIPLMEETRDIVRLDFFIYKKVCDYINE-RKKKNLPLFPISVNVSREHFKNP 463

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + +  ++  T      ++L  +ESV   N       +  L+ +G S+ +DDFG+  S
Sbjct: 464 HFVQQLDYIVKNTGIETKYLELEVTESVFSSNIADILNAIYDLKSLGYSIQMDDFGSGYS 523

Query: 869 LLSYLGYIPFDTVKFNGSLM-TG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L+ L  IPFD +K +   +  G  ++K   +++ II + K ++  ++ + +  +  I  
Sbjct: 524 SLNLLKDIPFDLIKLDKEFLGRGEISKKNRILIKGIIALCKELDIPLLCEGVETKEQINF 583

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           L + GC  +Q  + A P+      K+   
Sbjct: 584 LKQSGCSLVQGFYFAKPMPVEDFEKIYDS 612


>gi|317470480|ref|ZP_07929868.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901995|gb|EFV23921.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 998

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 111/641 (17%), Positives = 233/641 (36%), Gaps = 39/641 (6%)

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--LVGGLV 376
            L              +    L+     +FI  I   + I+  +   +I  A  +     
Sbjct: 361 ALIGVVPTDQLFSFSNKFNKTLVIVVTALFIASIIGVLVISILITRPVISLASDVKNSNP 420

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQS------LAVLGSGDIVWDWDIVRDRVTT 430
              I +  T ++ +   G   + + SD  + S      L +       ++ D   +++  
Sbjct: 421 SEPIALRRTGVKELDELGGSFEKLSSDVFQASRKFAQILRMASIKIGGFEIDWNENQLFM 480

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           T D   +                  + I +      +   +V  +  +  + +     D 
Sbjct: 481 TEDFFRVF---------RSEKIRKNMSIEEFTENMEMFRRYVSRKNEQ-DHIYIFEIPDK 530

Query: 491 Q-FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
           +   W+ + IR   +        +G+A DIT++   L+ +      D LT I NR++F  
Sbjct: 531 EDLFWVRLSIRYEEDK------IVGLAEDITKETLELKKMEYERDYDLLTNILNRRAFNA 584

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL   L     D      +M+ID+D  K +ND  G   GD  +      + +      ++
Sbjct: 585 RLEQ-LFQKGKDVLGTAALMMIDLDNLKFLNDSYGHDFGDKYIQKTAAGLKKYTPKESVV 643

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSK 667
           AR+SG+ F +     ++   I          +         +++  +  S G A +  + 
Sbjct: 644 ARMSGDEFFVFFYGYDSKDAIRKKINHCWSKMDEEYLELPNKQKFRLRMSGGIAWYPDNT 703

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYH 725
              ++++K A+ AMY  K RG      F        +  +  KE+L   +E   +   + 
Sbjct: 704 DDYTKLIKYADFAMYKVKKRGKGRYGEFDRESYFQDAYLLQNKEELNHLIEEELIEYYFQ 763

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PII +   E    EAL++         +  E + +A++   +  I      +     +  
Sbjct: 764 PIIDVKTGETFAYEALMRSRLDS--IPTVYEILSLAKQESKLYEIERLTWFKSMESFVDL 821

Query: 786 -RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            + +A      + IN      LD    + ++    +       I    +E        ++
Sbjct: 822 VQSKAVKRGTRVFINSIPNQDLDE---KDVERFELQYGEYLDLIVQEITEEERGNRMMQA 878

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
           +    R+ + G  + +DD+G+  +    L  +    +K +  ++        +  I+++I
Sbjct: 879 KKE-ERMHRWGGGIAIDDYGSGYNSEHLLLSVTAQYLKIDMKIIRDIHLDRNKQQIVKNI 937

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           I  A   +  IIA+ +    +++ + ++G DYIQ  + A P
Sbjct: 938 IYYAHERDIRIIAEGVEAYEEMQTVVKLGADYIQGYYFAKP 978


>gi|152972387|ref|YP_001337533.1| putative phosphodiesterase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957236|gb|ABR79266.1| hypothetical protein KPN_03879 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 657

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 184/431 (42%), Gaps = 14/431 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   + +  ++ +PN+   L  L   +            ++V+  +  +    VL
Sbjct: 222 RQHDELSIQSTRFPVSELPNKAFLLAMLEQTVARPQ-----SAALIVVACETLQDAAGVL 276

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             +  + +L++L  ++   +    +LA++SG  F I+        +    +  +   I  
Sbjct: 277 KESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEPWQAVTLSKQVLTIINE 336

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            + L   ++   AS+G A +  + +++ +  + A  A   A+ +G N +E F        
Sbjct: 337 RLPLHGLQLRPYASVGIAMF-HAGLSAEQFYRRAVSAAVTARRKGKNQIEFFDPEQMEKA 395

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+  A++N +  +   P +     EI G E L++              +   
Sbjct: 396 QRRLMEEHDIMTALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPSLIERI 455

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +I  +  +++E   R + +W+ Q  M  + + +N++   LL+++  E M  LI++ 
Sbjct: 456 ESCGLIIPVGYWVMEEACRQLAAWQSQGIM--LPLSVNVSLLQLLEHDRGEEMLKLIARY 513

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---IPF 878
             +P  + L  +ES  M +P+     L  LR+ G+ + LDDFG   + L  L     +P 
Sbjct: 514 RIAPGTLILEVTESCRMDDPQDVMARLRPLREAGVQIALDDFGMGYAGLHQLQQMKALPV 573

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           D +K +   +     + ++++ ++I +A+ +   I+A+ +  +   + L   G + +Q  
Sbjct: 574 DILKIDKVFI-DMLPEDVSMVPAMIQLARGLSLRIVAEGVENDAQRRWLQAAGVEVLQGH 632

Query: 939 HVASPLGFNSI 949
                L   + 
Sbjct: 633 LFGCALPQEAF 643


>gi|167745746|ref|ZP_02417873.1| hypothetical protein ANACAC_00439 [Anaerostipes caccae DSM 14662]
 gi|167654777|gb|EDR98906.1| hypothetical protein ANACAC_00439 [Anaerostipes caccae DSM 14662]
          Length = 998

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 111/641 (17%), Positives = 233/641 (36%), Gaps = 39/641 (6%)

Query: 319 VLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--LVGGLV 376
            L              +    L+     +FI  I   + I+  +   +I  A  +     
Sbjct: 361 ALIGVVPTDQLFSFSNKFNKTLVIVVTALFIASIIGVLVISILITRPVISLASDVKNSNP 420

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQS------LAVLGSGDIVWDWDIVRDRVTT 430
              I +  T ++ +   G   + + SD  + S      L +       ++ D   +++  
Sbjct: 421 SEPIALRRTGVKELDELGGSFEKLSSDVFQASRKFAQILRMASIKIGGFEIDWNENQLFM 480

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           T D   +                  + I +      +   +V  +  +  + +     D 
Sbjct: 481 TEDFFRVF---------RSEKIRKNMSIEEFTENMEMFRRYVSRKNEQ-DHIYIFEIPDK 530

Query: 491 Q-FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLD 549
           +   W+ + IR   +        +G+A DIT++   L+ +      D LT I NR++F  
Sbjct: 531 EDLFWVRLSIRYEEDK------IVGLAEDITKETLELKKMEYERDYDLLTNILNRRAFNA 584

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           RL   L     D      +M+ID+D  K +ND  G   GD  +      + +      ++
Sbjct: 585 RLEQ-LFQKGKDVLGTAALMMIDLDNLKFLNDSYGHDFGDKYIQKTAAGLKKYTPKESVV 643

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI--NLLEREITVTASIGFASWTSSK 667
           AR+SG+ F +     ++   I          +         +++  +  S G A +  + 
Sbjct: 644 ARMSGDEFFVFFYGYDSKDAIRKKINHCWSKMDEEYLELPNKQKFRLRMSGGIAWYPDNT 703

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYH 725
              ++++K A+ AMY  K RG      F        +  +  KE+L   +E   +   + 
Sbjct: 704 DDYTKLIKYADFAMYKVKKRGKGRYGEFDRESYFQDAYLLQNKEELNHLIEEELIEYYFQ 763

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           PII +   E    EAL++         +  E + +A++   +  I      +     +  
Sbjct: 764 PIIDVKTGETFAYEALMRSRLDS--IPTVYEILSLAKQESKLYEIERLTWFKSMESFVDL 821

Query: 786 -RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            + +A      + IN      LD    + ++    +       I    +E        ++
Sbjct: 822 VQSKAVKRGTRVFINSIPNQDLDE---KDVERFELQYGEYLDLIVQEITEEERGNRMMQA 878

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
           +    R+ + G  + +DD+G+  +    L  +    +K +  ++        +  I+++I
Sbjct: 879 KKE-ERMHRWGGGIAIDDYGSGYNSEHLLLSVTAQYLKIDMKIIRDIHLDRNKQQIVKNI 937

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           I  A   +  IIA+ +    +++ + ++G DYIQ  + A P
Sbjct: 938 IYYAHERDIRIIAEGVEAYEEMQTVVKLGADYIQGYYFAKP 978


>gi|116050514|ref|YP_790667.1| EAL domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585735|gb|ABJ11750.1| putative EAL domain [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 499

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 182/427 (42%), Gaps = 11/427 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D  TG+ NR    + ++  L        +   ++ + +     I   LG    +D+++
Sbjct: 79  YIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLN--TIIRTLGYPFSNDLML 136

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
               RI   L     L ++S  RFG++L  +          + + ++   P+      I 
Sbjct: 137 EARDRIRAEL-PDFTLYKISPTRFGLLLPRQQQEET-ESVCLRLLRAFESPVVCRGIPIK 194

Query: 654 VTASIGFASWTSSKITSS-EMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDL 711
               +G        +    + L+    A   A+ RG G    +  +   +     +   L
Sbjct: 195 AIVGLGVLPLADDPLAGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSL 254

Query: 712 CLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             A+   E  +LVY P I L      G+EAL++W HP+ G +S +EF+ +AE+  +++ +
Sbjct: 255 SQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPL 314

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++L      +  W       P+ + IN+++ D+ D+   E    L        S ++L
Sbjct: 315 SDWVLRHAMAQLAQWNA--RNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALEL 372

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
            F+ESV++ +      +L R R++G+ + +DDFGT  S  +YL  +P   +K + S    
Sbjct: 373 EFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPVTAIKLDQSFTRD 432

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              + K  ++ +++I +A  +   ++A+ I        L   GC   Q   +A P+    
Sbjct: 433 LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQ 492

Query: 949 ILKLLKE 955
           +   L+ 
Sbjct: 493 LEDWLRR 499


>gi|325265129|ref|ZP_08131855.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. D5]
 gi|324029533|gb|EGB90822.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. D5]
          Length = 713

 Score =  304 bits (778), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 171/440 (38%), Gaps = 25/440 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++++ +  +   +  D LTG+ NR  ++++L ++    A  D     V+  DI+  K  N
Sbjct: 294 QKRRMIMKLEEMSRIDVLTGMGNRNYYMEKLESL----AKLDLGSLGVVFCDINGLKYAN 349

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD ++ S+   + +         R+ G+ F  + I+        +      ++
Sbjct: 350 DHFGHAYGDKMIQSVADGVKQTFPE--YAYRIGGDEFIALYINGT-----KEAFYKRFEA 402

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +    +  + E     S+G  ++    I   +++  ++  MY  K           +   
Sbjct: 403 LK---DYAQNECICDFSMG-VNFGEGNINVDQLISGSDKMMYTEKQ----IYYDNTLEGR 454

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                     L   ++  +  +   P I L   E+VG EAL++            +F+ +
Sbjct: 455 SVQHRAAARQLVNDIKEGDFEVFLQPKIYLDTGEMVGAEALLRRKKEDGDYYLPEQFISL 514

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            E+  +I+ ++ F  E +   +  W +      + + +N +   L+   +   +  +  K
Sbjct: 515 YEKEGVIQFLDRFAFEEVCGILKEWIE-TGAEAVPVSVNFSRISLMQRGIVRDLAQIREK 573

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  + L  +ES+    P   + L+    K    ++LDD+G + S LS L  + F  
Sbjct: 574 YGVPEKLLVLEITESISKMEPPALKELMKEFEKYHFVVSLDDYGYQYSNLSILSNMDFVE 633

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII--AKDIYGEIDIKELTRMGCDYIQ 936
           +K + SL+       K   ++ + I M + +   +I  A+ I  +  +  L    CD  Q
Sbjct: 634 LKLDKSLVDNLKDNPKARVVVENSIEMCRQLN-KVISTAEGIESKEQMDILKGFNCDMGQ 692

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL      +   + 
Sbjct: 693 GFLFSHPLLKKEFFQKYGKH 712


>gi|29144174|ref|NP_807516.1| phosphodiesterase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29139811|gb|AAO71376.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 643

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 178/411 (43%), Gaps = 14/411 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 220 MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 274

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 275 VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 334

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 335 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 393

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 394 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 453

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 454 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 511

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 512 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 571

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           P D +K +   + G      +++ +II MA+++   +IA+ +  E     L
Sbjct: 572 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEGVEDEAQRAWL 621


>gi|42525647|ref|NP_970745.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Treponema
           denticola ATCC 35405]
 gi|41815658|gb|AAS10626.1| HAMP domain/GGDEF domain/EAL domain protein [Treponema denticola
           ATCC 35405]
          Length = 801

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 158/428 (36%), Gaps = 15/428 (3%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT----R 597
            N  +   ++  I+     D+ +   ++ +DIDK+K IN + G   G+ ++  +      
Sbjct: 373 LNSTTLTQKIDNIIINMNADEEVY--LLYLDIDKFKTINQLWGYYAGNALIQHIYSMILA 430

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I       D    + G+ F I     N           + K  +      E+++T++ S
Sbjct: 431 HIKSFNIPEDSFMHVIGDEFSIFYFG-NEEEVCRFTQTLIDKINSEYFTWNEKKLTISIS 489

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCL 713
           +G  +      +S E++ NA  A   A  +GG   E    S                +  
Sbjct: 490 VGIVNIPKIPQSSQEIISNAYDACSIAFRKGGGCYELLLSSGITGFSRGNISFWLNTIQK 549

Query: 714 AVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A++     L    I+ L D       E LI+        I    F+ IAE   +I  ++ 
Sbjct: 550 ALKEDNFVLYAQAIMPLNDLLHRPKYEILIRLKTNDDHIIMPDVFIPIAERYNLIYEVDK 609

Query: 773 FMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           +++            +          INI++     N+L E +                 
Sbjct: 610 WVIRNAFAFFAEATSKGDLNEDAIFSINISADSFFSNDLVEFIAESRKTLNVPAHNFCFE 669

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + N E +   +  LRK G S +LDDFG   S   YL  +P D VK +GS +   
Sbjct: 670 ITESCAVRNLEATSTFVTELRKQGFSFSLDDFGKGFSSFPYLKTLPIDYVKIDGSFIKSI 729

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     ++++++  M  ++    I +    +  +  L  +G DY Q      P+     
Sbjct: 730 DKDYIDFSMVKTMRDMCYHLGLYTIGEYAETDKIVSILKDIGVDYGQGYAFQKPIPIAEA 789

Query: 950 LKLLKERF 957
           +KL  +R 
Sbjct: 790 IKLQNDRN 797


>gi|291288230|ref|YP_003505046.1| diguanylate cyclase/phosphodiesterase [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290885390|gb|ADD69090.1| diguanylate cyclase/phosphodiesterase [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 808

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 92/437 (21%), Positives = 185/437 (42%), Gaps = 32/437 (7%)

Query: 517 NDITEQKKSLEGIL----CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           +DI  + K LE +        + D+LTG+PNR   ++ L T+           P +++++
Sbjct: 385 HDIENRNKELEELNIELTNQLYTDHLTGLPNRNKLVNDLNTV---------DSPILIMLN 435

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIA 631
           ID +KKIN+  G  +GD VL+ +  RI       D+   +  GN + I++ S+     + 
Sbjct: 436 IDSFKKINETYGFIIGDFVLIDVGERISSFDNKYDMKTYKFHGNEYAILIDSDIEGNTLK 495

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA---KHRG 688
                + + +   +   E EI +  S+              + + A +A+ HA   K   
Sbjct: 496 TLVHELTEYLDFNVKYEELEIEIDISVTAGVSAEKGN----IFEKAGMALRHADKKKLPY 551

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +  S  +     + +   + +  A+  + L   + PI      E+   E L++     
Sbjct: 552 TIYDSSIDIVDEYENDIRWTKIVKRALNENTLVPYFQPIANSQTGEVEKFECLLRLIDHD 611

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              I+  +F+ I ++  + + I   ++ +         +          IN++ +D++D 
Sbjct: 612 -EVITPFQFLDIIKKTKLYQHITRRIITKSF-------EMFTSNDFMFSINLSIEDVMDE 663

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + +  L+  +    +R+     ES  + + E     +  ++K G  + +DDFG+  S
Sbjct: 664 STSKFILDLLKTSGI-ANRVIFELLESEGIESFEVVNDFIKEIKKTGAMVAIDDFGSGYS 722

Query: 869 LLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
              YL  +  D +K +GSL+    +   A  I+ +II  A  +    +A+ ++ E    +
Sbjct: 723 NFVYLSELQVDIIKIDGSLIKNIDKDTQAQIIVGTIIKFANQLNIKTVAEFVHSESVKLK 782

Query: 927 LTRMGCDYIQDSHVASP 943
           +  MG DYIQ  H+  P
Sbjct: 783 VIEMGIDYIQGYHIGQP 799


>gi|300869179|ref|ZP_07113775.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S)
            [Oscillatoria sp. PCC 6506]
 gi|300332828|emb|CBN58973.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S)
            [Oscillatoria sp. PCC 6506]
          Length = 1041

 Score =  303 bits (777), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 74/279 (26%), Positives = 134/279 (48%), Gaps = 43/279 (15%)

Query: 720  LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
            L L Y PII L    I G EAL++W HP  G +S +EF+ +AEE  +I  +  ++L    
Sbjct: 757  LLLHYQPIISLSTGRISGFEALVRWQHPTRGLVSPAEFIPVAEETGLIIPLGAWVLREAC 816

Query: 780  RDIISWRDQANMP----------------------------------------PIFILIN 799
            R +  W++                                             P+ + +N
Sbjct: 817  RQLRIWQELLKKEEGRRKKEEEIRNRKEGRCDSPNFSNYQLPITNYQLPITNYPLTMSVN 876

Query: 800  IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
            ++ K L    L E +  ++ +T   PS +KL  +ESV++ N  ++  +L +L+   I L+
Sbjct: 877  LSGKQLGQMNLFEEIDEILQETGCDPSSLKLEITESVIVENVAKASTMLAQLKARNIRLS 936

Query: 860  LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S LSYL   P DT+K + S ++  + +    + I+R+I+ +A N+   +IA+
Sbjct: 937  IDDFGTGYSSLSYLHRFPLDTLKIDRSFVSRLSTEGGRPLQIVRAIVTLAHNLGLDVIAE 996

Query: 917  DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +  +  + EL ++ C++ Q   ++ PL   +  + L++
Sbjct: 997  GVETKEQLAELQQLECEHAQGYLLSRPLDSEAATEFLQK 1035



 Score =  249 bits (635), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 147/367 (40%), Gaps = 24/367 (6%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
           A   G  L          Q           +    ER    V  S + +  +      V 
Sbjct: 322 AQSIGRFLAAHDTEIERQQAEKERIELIASLQESEERYRRLVELSPEAIAVYS-EDKIVY 380

Query: 430 TTPDIATILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                A ++G  ++  + G        +H +  +  R  +       +     E ++   
Sbjct: 381 INAAGARLVGAQSAKELIGFPI--FNLVHRDYLEVVRVRIQQVEEENKKTNLIEQKMIRL 438

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           D +   + I   P +   G +   I I  DITE+K++ + +L +AF D LT +PNR  F+
Sbjct: 439 DGKVIDVEIAGIP-ATYQGKVATQI-IIRDITERKRAQQQLLHDAFHDVLTQLPNRALFI 496

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +R+   +  S    + +  V+ +D+D++K +ND LG +VGD +L+++  R+   L   D 
Sbjct: 497 ERVGQAIRRSKQQPDYKFAVLFLDLDRFKVVNDSLGHSVGDQLLIAIAHRLTSCLHPSDT 556

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ARL G+ F ++L    +       A  +    A P NL   E+  T SIG     S   
Sbjct: 557 AARLGGDEFTVLLEGIQSLGDATIIAKKINHEFAQPFNLEGHEVFTTVSIGIVFSQSEVS 616

Query: 669 T----------------SSEMLKNAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKED 710
           +                  ++L++A++AMY AK  G    E F   +       + ++ D
Sbjct: 617 STSEEDWKYMHCPMYNHPEDLLRDADIAMYRAKALGKARHEVFNLAMHDQTISLLQLETD 676

Query: 711 LCLAVEN 717
           L  A++ 
Sbjct: 677 LRRAIQE 683



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 9/140 (6%)

Query: 395 YFSQGIFSDGERQSL---AVLGSGDIVWDWDI---VRDRVTTTPDIATILGLASGSMHGP 448
             +       ER  L   A+  S + +   D        +   P    + G     + G 
Sbjct: 28  AAAIERSRSEERLQLMERAIASSSNGIIITDATQSDNPTIYVNPSFERMTGYQRDEILGK 87

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
               L     +        + + +   +   Q   +    D    W  + I P+ N+   
Sbjct: 88  NCRILQR--ADRNQPALKEVRTALNEGKEC-QVVLKNYRKDGTPFWNELSISPVYNTRRH 144

Query: 509 ILRYIGIANDITEQKKSLEG 528
           +  ++GI  DIT++K+S E 
Sbjct: 145 LTHFVGIQTDITDRKRSEEE 164


>gi|253999674|ref|YP_003051737.1| diguanylate phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253986353|gb|ACT51210.1| diguanylate phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 430

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 136/274 (49%), Gaps = 3/274 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +   + + +  ++R  ++ DL  A+  ++L L Y P     D  IVG EAL++W HP  G
Sbjct: 158 YAMVWVMQANLAERNALESDLRKALLANQLILYYQPQ-AGDDGRIVGAEALLRWRHPVKG 216

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S ++F+ +AEE  +I  I  ++L      ++ W    +   + I +N+++      + 
Sbjct: 217 MVSPADFIPLAEETGLILPIGHWVLGMACAQLMLWSKHPSTAHLSIAVNVSALQFKQPDY 276

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + ++I ++  +P+ +KL  +ES+++ +       +  L+  G+ L+LDDFGT  S L
Sbjct: 277 VSQVVSVIERSGINPALLKLELTESMLVNDVNDIISKMHALKAKGVGLSLDDFGTGYSSL 336

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P D +K + S +         +AI+++++ + + +   +IA+ +  E   + L 
Sbjct: 337 SYLKKLPLDQLKIDQSFVRDMLTDANDVAIVQTLVALGQAMHLHVIAEGVETEQHRQFLA 396

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            MGC   Q   ++ P+       LL      + +
Sbjct: 397 DMGCLSYQGYLLSKPVPIAEFDALLAAHQASLTS 430


>gi|154174790|ref|YP_001408902.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter curvus 525.92]
 gi|112802229|gb|EAT99573.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter curvus 525.92]
          Length = 1359

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 106/544 (19%), Positives = 228/544 (41%), Gaps = 19/544 (3%)

Query: 414  SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
            + + V         +        + G     +      +   I           +     
Sbjct: 728  AKEGVATLSADLKIIDANDAFCQMCGYERDEILAKDVAF---IKPG-LSGLTQDMTKAAK 783

Query: 474  YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               G  Q +   +  + +  + + R+ P+++  G +  Y+ + ++I + + + + +   A
Sbjct: 784  G--GFWQSKILNKNKNGENRFELARLAPLNDVQGGLFCYVLLVSNINDIESNQDYLEYIA 841

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            + D LT +PNR  F  +L  +L  +         +  +D+D +K IND  G   GD  L 
Sbjct: 842  YHDPLTRLPNRILFTRKLEDMLAKNDRH----IAIAYLDMDGFKGINDTYGHQAGDKFLT 897

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
             ++  I  L    D+ AR+ G+ F  I++   N+ ++ +    M +  +  +     ++ 
Sbjct: 898  EISSGIDRLFDERDMFARIGGDEFVAIIVY-KNAGEVYEIVQNMLRIASSEVWYENVKLQ 956

Query: 654  VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--L 711
            ++ASIG +  + ++ ++  +L+ A+ AMY AK  G N    F  S  R+ +   +E   +
Sbjct: 957  ISASIGVSMASLAQTSAENLLEQADWAMYQAKLGGKNRYYVFDASKDRNFKNQYEEASKI 1016

Query: 712  CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              A+ + E++L Y P I +   +I+  EALI+W   +   I   +F+ + ++  +I  I 
Sbjct: 1017 LKALRDDEIFLEYQPEIDIKTGKILSYEALIRWQS-EGRVIYPDDFLPLVKKQYIIDDIA 1075

Query: 772  LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKL 830
            LF +++     I W          + +NI  + L  +E     + L +     +   + +
Sbjct: 1076 LFSIKKALEAQILWSKNGKDAKACVNLNI--EQLCSDEFFAKFKELANANKRLNFGELVI 1133

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
               ++  + + + ++  L R ++ G+   LDDF +  S    LG +  +  K +  L   
Sbjct: 1134 DIVDANAVKDLQPAQKALQRYKRFGVRFVLDDFASHSSSFEALGVLKVERFKVDKQLSRQ 1193

Query: 891  STEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
            + + + +I  LR I  ++         K+I  +  ++ L   G +  Q +    PL  + 
Sbjct: 1194 AFDSKASIMTLRMIKQISDVFGLKATIKNIEDKKTLEILCGFGFECFQGNFFTKPLRLDE 1253

Query: 949  ILKL 952
             L+ 
Sbjct: 1254 ALRY 1257



 Score = 43.8 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 45/142 (31%), Gaps = 3/142 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGS 444
               +       +   +D +     +  S  +V+ W      +      A +LG   +  
Sbjct: 574 SFSDLSDLARLQERYDADQKSFKNILWASEAVVFSWSKTSGVMQVDDGFAKMLGFNDANE 633

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503
           +          +      +F  + +            E +  A D    ++ +R R +  
Sbjct: 634 LGVLDFKRFKALLAGSYASFEQLFEGMRFDESVYF-GELKFHAKDKSAVYIGVRARALEF 692

Query: 504 NSNGDILRYIGIANDITEQKKS 525
           + NG+     G   ++T+Q ++
Sbjct: 693 DENGEACLIKGAFKNLTQQNQA 714


>gi|295110716|emb|CBL24669.1| diguanylate cyclase (GGDEF) domain [Ruminococcus obeum A2-162]
          Length = 997

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 100/575 (17%), Positives = 207/575 (36%), Gaps = 41/575 (7%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSG--DIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           Q   A    SQ + +   +    +  +      ++       V  T +  T++G    + 
Sbjct: 435 QFSDAITQLSQDVLNTSTKFLRIMEMASVEIGGYEIRFDTGSVFFTENFFTVIGAPFSAD 494

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                +    I  +  +N+      F     G     + VR       ++ + ++     
Sbjct: 495 AVLNLDEFRKILRDFTENY------FFKSESGDTNI-YCVRLPKRGLRYVRMEVKM---- 543

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
            G +   +G+  D+T        I      D LTG+ NR++F      I      D    
Sbjct: 544 EGWVQ--VGLVEDVTTAMMERLRIEHERDYDALTGLHNRRAFKRESEKIFSHP--DKIGH 599

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++++D+D  K  ND  G   GD+ +    R + E      + A +SG+ F ++     
Sbjct: 600 AALVMMDLDNLKYTNDTFGHDWGDEYIRQAGRCLEEGTPKGTLSAHISGDEFNLLFHGYK 659

Query: 626 NSLKIADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           +  +I      + K+I   +      +++ ++ S G A +     +   M K+A+ AMY 
Sbjct: 660 SQDEIRYQLDKLGKAIEGKVIHLPNGQKLHLSISGGVAWYPEDSNSLGVMRKHADFAMYQ 719

Query: 684 AK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K   +G        V         I+ +    V+   +   + PI+     EI   EAL
Sbjct: 720 VKKTEKGKIAEFDQDVYEEEFRDSQIRCEFHRFVKEELVTYYFQPIVSAKTGEIEAYEAL 779

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILIN- 799
           ++ + P          M IA E   ++ I    L    ++    +++        + +N 
Sbjct: 780 MRSELP--ILKRPDVVMKIAREEGALREIERMTLFHATQEFKELKEKNLIKGDALLFVNS 837

Query: 800 IASKDLLDNE---LCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIG 855
           IAS+ +   +        + L         +I +  +E   +     + +         G
Sbjct: 838 IASQHMDREDEEEFARRFKDL-------AKQIVIEITEEESLDYHALQHKKNASAFS--G 888

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTI 913
           +   LDD+G+  S    L  +    +K + S++        +  I+ +I+  A   +  I
Sbjct: 889 V-FALDDYGSGYSNEKSLLDLAPGYIKVDLSIIRDIDTDPDKQQIVENIVAYAHKRDMKI 947

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +A+ +    +I ++  +G D +Q  ++A P     
Sbjct: 948 VAEGLETPEEINKVLELGVDLLQGFYIAKPQPVPE 982


>gi|91776219|ref|YP_545975.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
 gi|91710206|gb|ABE50134.1| diguanylate cyclase/phosphodiesterase [Methylobacillus flagellatus
           KT]
          Length = 712

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 137/720 (19%), Positives = 259/720 (35%), Gaps = 67/720 (9%)

Query: 254 RACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA-- 311
                +++  + I  +  ++  +R     G +  + +A  AI      +    T+ +A  
Sbjct: 7   YTLVLLSVGIAFISSMAAFMFTDRVVRNQGRLAKAWMALGAIALGSGVWAMHFTSMLAWS 66

Query: 312 -------RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI--FIWFIGLWMAITKRL 362
                   +    +         +  +    R    + A I+    +      M  T   
Sbjct: 67  LPTPMESMLDHTVLSWLIAVSASWLALDIASRPGYSLQALIIAGSVMGLGISGMHYTGMH 126

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-----RQSLAVLGSGDI 417
               + P +     L+V+ +   V   +LA                  R   A+  +G  
Sbjct: 127 ALQ-MFPDITYNRTLLVLSLSVAVAVSILAMACMFHAGHQSRNNSLRARLYAALAMTG-G 184

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           +          T    I     +A  +        L  I                     
Sbjct: 185 IACT-----HFTAMAAIEIPAHIALTATPTSQPGLLSVI-------IALGTCLLALLAAI 232

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               + R R  DN   W+                        T+ K S   +L     D+
Sbjct: 233 LATVDSRHRDRDN---WLHAD---------------------TQDKLSRMHML-----DD 263

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           LT +PN   F   L   +  +A   +    V VI +D  ++I   LG  + ++VL    +
Sbjct: 264 LTQLPNHSYFQHHLNIGIRRTARLGSA-LAVAVIKLDNLRQIRQELGQHISNEVLRLAAK 322

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           RI E ++  D+ A  +   F I+     +   I      + +S+   + +   EI + A 
Sbjct: 323 RIKETIRGCDMAAYNTSETFLILFEDIQHEQDIVPVMERIMQSLNATLRIDHHEIPLEAR 382

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAV 715
            G A +     T+  +L  AE AM+            F      +   +++  ++L  A+
Sbjct: 383 AGLALYPKHG-TADRLLTYAEAAMHRVAPDDNRGFRLFDDRLEPASFDLLETRQELRKAI 441

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           EN E+ L + P + +    I GLE L +W HP  G I ++ F  +AE + +I  IN ++L
Sbjct: 442 ENGEMALYFEPRMDMAGGTITGLEVLPRWLHPTKGAIPAATFAPMAENMGLINDINTWVL 501

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E+  R I   +      P+++   + S  L    + + +   +++       + L  +E 
Sbjct: 502 EQSCRIIKDLQGHLIHVPVYL--PLTSAQLHTPGIQQHVADTLNRFKLPSDALVLEVAEL 559

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
             M  PE    LL +L  I + ++L++FGT+ S L Y+ ++    +K + S         
Sbjct: 560 DFMQQPEHHTDLLKQLPAISLKISLENFGTRFSSLPYIQHLGLKILKLDHSFTRELLSNP 619

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K  AI  +II +A      ++A+ +  E +   L  + C+ IQ    A+P+    + + L
Sbjct: 620 KARAIAGAIIELAHAQHLKVVAEHVSNEAERNTLLSLECNEIQGYFCANPVHEAQLSEFL 679


>gi|332993766|gb|AEF03821.1| sensory box/GGDEF/EAL domain-containing protein [Alteromonas sp.
           SN2]
          Length = 856

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 112/585 (19%), Positives = 211/585 (36%), Gaps = 25/585 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           +  +Q +      S    +  E  S  +    D +   D+    +T    +  +LG  + 
Sbjct: 274 YGSVQDITEHKRLSDTQHNYTEYLSTILDSMADALVTIDVDGTVITANNSVEHVLGYDAD 333

Query: 444 SMHGPIRNWL--PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            + G     L       N +++  T +       +  L++ F V   +     + I +  
Sbjct: 334 ELIGQDIGILVPKVESQNTKEHLETFMKGDRKTTKASLEHHF-VSHKNGGLIPVDISLSS 392

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
                    R + +  D++ +K+  + +   A+ D++T +PN + F   L  ++  +   
Sbjct: 393 FHFDMQK--RIVVVFRDMSVRKQLADQVYQAAYYDSITQLPNTKLFDKALKGVIRKA--- 447

Query: 562 DNLRPTVMV---IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +    +    I ID   +     G    D V+  L  R+      P  + R + + F 
Sbjct: 448 -GVTYADIYCAQIAIDNISQYKQAFGQPTADYVMRILASRLTRTFSKPFAIFRGAEDNFY 506

Query: 619 IILISENNSLK------IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
           ++               I          +   I L      + A +        K   S+
Sbjct: 507 LLYEDIITEEDKDAQKTIDAVRRQFTDEVCSDITLHNSPHKIYAVVTICQLKGMKANVSK 566

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +    E           N    F  +S         I++ L  AV N EL++   P    
Sbjct: 567 VRHMLEEGYKQLSRDNVNTPVVFHSASSVGYDRYNFIRQSLGAAVSNHELFIQLQPQY-E 625

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D  +V  EAL++W HP+ G I+ +EF+ IAEE   I  I  +++    + +        
Sbjct: 626 SDGSMVCAEALVRWQHPQLGLITPAEFIPIAEESDAIVEIGQWVMNECGKLLYECNKSGL 685

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                + INI++K +   +  E M A+I+        + +   E+V++G+    R  +  
Sbjct: 686 RT--RLSINISAKHMARADFTEKMLAVIAHWNVPKGSLTIELREAVLIGSFALVRNSMKE 743

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKN 908
           L   G+S ++D FG+    LSYL  +    VK +   +    +      +L SI  +AK 
Sbjct: 744 LADKGVSFSIDHFGSGNLNLSYLRDLCIKEVKLDRHFIDEEDKIGAQSPLLNSIFDIAKI 803

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            E   +A+ I       +  + GC   Q   +  PL        L
Sbjct: 804 FELRTVAEGIENTTQFNDAIKRGCHVFQGYFLDKPLNVTDWRAKL 848



 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 27/193 (13%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q+ L    F+  +    +  +     S    W+ D+    V+ T +   + G+  G   
Sbjct: 146 LQYKLIQHPFTDKLAEKIQLLNEIGRISHVGGWELDLHASLVSWTRETYLLFGVTPGR-D 204

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
             +   L       R+     + +           E     A+    W+ +   P +++ 
Sbjct: 205 ITVERALANFPQASREKIAKAMKASRKSMS-TFALEVEYINAEGYRRWLKMTGTPQTDTT 263

Query: 507 G----DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
                 + R  G   DITE K+  +                   + + L+TILD  A   
Sbjct: 264 HSHQEKVYRIYGSVQDITEHKRLSDTQHN---------------YTEYLSTILDSMAD-- 306

Query: 563 NLRPTVMVIDIDK 575
                ++ ID+D 
Sbjct: 307 ----ALVTIDVDG 315


>gi|313201725|ref|YP_004040383.1| diguanylate phosphodiesterase [Methylovorus sp. MP688]
 gi|312441041|gb|ADQ85147.1| diguanylate phosphodiesterase [Methylovorus sp. MP688]
          Length = 430

 Score =  303 bits (776), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 136/274 (49%), Gaps = 3/274 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           +   + + +  ++R  ++ DL  A+  ++L L Y P     D  IVG EAL++W HP  G
Sbjct: 158 YAMVWVMQANLAERNALESDLRKALLANQLILYYQPQ-AGDDGRIVGAEALLRWRHPVKG 216

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S ++F+ +AEE  +I  I  ++L      ++ W    +   + I +N+++      + 
Sbjct: 217 MVSPADFIPLAEETGLILPIGHWVLGMACAQLMLWSKHPSTAHLSIAVNVSALQFKQPDY 276

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + ++I ++  +P+ +KL  +ES+++ +       +  L+  G+ L+LDDFGT  S L
Sbjct: 277 VSQVVSVIERSGINPALLKLELTESMLVNDVNDIISKMHALKAKGVGLSLDDFGTGYSSL 336

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P D +K + S +         +AI+++++ + + +   +IA+ +  E   + L 
Sbjct: 337 SYLKKLPLDQLKIDQSFVRDMLTDANDVAIVQTLVALGQAMHLHVIAEGVETEQHRQFLA 396

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            MGC   Q   ++ P+       LL      + +
Sbjct: 397 DMGCLSYQGYLLSKPVPIAEFDALLAAHQASLTS 430


>gi|309776605|ref|ZP_07671584.1| putative GGDEF domain/EAL domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915641|gb|EFP61402.1| putative GGDEF domain/EAL domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 976

 Score =  303 bits (776), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/657 (15%), Positives = 241/657 (36%), Gaps = 57/657 (8%)

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
           +           Y  A+ L   ++   +  I L   I          P       L    
Sbjct: 336 WYLIGTLEYNALYSSAIRLQKTFLWTMMGSIVLAFIIALFTSMKFSHPIARLAGALKSFD 395

Query: 382 IGFTVI----------QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI-VRDRVTT 430
               +           +   +    S+ + +   R S  +      +   ++     +  
Sbjct: 396 PSNEMALPRVNILEIDELASSIEDLSRNLSTAESRLSQVIHALDMPIGAIEVYDSGLIYC 455

Query: 431 TPDIATILG--------LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           T +I  +L               +  I ++              + +    ++ GR    
Sbjct: 456 TEEIPHLLCFQNRKRTAYTRDEFNREIESFKTR---------TEVFEEKEEWQEGRQVQT 506

Query: 483 FRVRA-ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           + V   +++   W+   +        +    I +  D++++ +  + +      D LT +
Sbjct: 507 YVVSHQSEDHETWLRFILS-----EHEGTHVIVVM-DVSDEIREKQKLTYERDHDVLTQL 560

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR++F  R+ T+L    ++      +++ D+D  K IND  G   GD ++ +  R + +
Sbjct: 561 INRRAFRSRVETVL---KSEGCGICAMILWDLDNLKVINDTYGHDAGDQLICATARYLQK 617

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA--MPINLLEREITVTASIG 659
           L     I++R++G+ F +         +I      M + I         E +I +  S G
Sbjct: 618 LTSSRCIVSRMAGDEFLVFFHHYQKESEILALVEGMHRQINSGTITFTGEEQIRIRLSAG 677

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVEN 717
            A +  +      + K A+ AMY  K      +E F+ S++  D++++  + +L   +++
Sbjct: 678 IAWYPRNAKDFDTLSKYADFAMYSIKSTQKGGIEQFKASTYHKDKLLLSGRNELNEILDH 737

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
           + +   Y PI+ L  + I   EAL++         S  + + +A     +  +      +
Sbjct: 738 NLVSYAYQPIVDLKTKSIYAFEALMRPRST--IITSPVDILRVARSQSQLYRVEFMTWTQ 795

Query: 778 IARDIISWRDQANMPPIFILINIASKDL-LDNELCEGMQALISKTLYSPSRIKLSFSESV 836
                 ++ +      +FI    +   + + ++L   ++   ++       + +   E+ 
Sbjct: 796 SIAQFHAFHETFPKARLFIN---SIPSIPMLDDLTRSLEQAYTEY-LP--LLVIEMIETD 849

Query: 837 VMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            +  +   ++      +     + +DDFG+  S  S L  +  + +K +   +    +  
Sbjct: 850 EIEQHYLETKQQFA--KHWNAHIAIDDFGSGYSNDSTLLNVAVNYIKIDMMFVRDIHKDE 907

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP-LGFNSI 949
            R  ++ ++I  A      +IA+ +  + ++++L RMG D++Q  ++  P L    I
Sbjct: 908 TRQKLVENMISFAHRQNIRVIAEGVEIKEELQQLMRMGVDFVQGYYLGKPALRIEEI 964


>gi|222832800|gb|EEE71277.1| predicted protein [Populus trichocarpa]
          Length = 489

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 124/250 (49%), Gaps = 4/250 (1%)

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           +  +++ L  AV + +L L Y P I      I  +EAL +W+HP++G IS   F+ +AE 
Sbjct: 8   QFDLQQALRRAVASRQLVLFYQPKIDTRTGRIRSVEALARWNHPQFGLISPRVFIPLAER 67

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  I  ++++   R    W  +     + + INI+   L    L + +   I++   
Sbjct: 68  FGLISEIGDWVIDEACRQTAQWARERRF--MRVSINISGYQLFQTRLAQFIAEAIARHHI 125

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P ++    +ESV M + + +  ++  L  +G+ +++DDFGT  S L+ L  +  D VK 
Sbjct: 126 RPEQLVFEITESVAMEDDKTTMAVIAELTGMGVQISIDDFGTGYSSLALLRQLCADEVKI 185

Query: 884 NGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +          A++ +I+ +A  +E  ++A+ +  +   + L  +GCD +Q  + A
Sbjct: 186 DRSFVRDVALKSDARAVVDAIVRLAHALELRVVAEGVTNQQQREVLQALGCDELQGFYFA 245

Query: 942 SPLGFNSILK 951
            P+   +++ 
Sbjct: 246 RPMDAQALIA 255


>gi|325475235|gb|EGC78420.1| HAMP domain/GGDEF domain/EAL domain-containing protein [Treponema
           denticola F0402]
          Length = 801

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/428 (20%), Positives = 157/428 (36%), Gaps = 15/428 (3%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT----R 597
            N  +   ++  I+     D+ +   ++ +DIDK+K IN + G   G+ ++  +      
Sbjct: 373 LNSTTLTQKIDNIIINMNADEEVY--LLYLDIDKFKTINQLWGYYAGNALIQHIYSMILA 430

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
            I       D    + G+ F I     N           + K  +      E+ +T++ S
Sbjct: 431 HIKSFNIPEDSFMHVIGDEFSIFYFG-NEEEVCRFTQTLIDKINSEYFTWNEKNLTISIS 489

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM----IKEDLCL 713
           +G  +      +S E++ NA  A   A  +GG   E    S                +  
Sbjct: 490 VGIVNIPKIPQSSQEIISNAYDACSIAFRKGGGCYELLLSSGITGFSRGNISFWLNTIQK 549

Query: 714 AVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           A++     L    I+ L D       E LI+        I    F+ IAE   +I  ++ 
Sbjct: 550 ALKEDNFVLYAQAIMPLNDLLHRPKYEILIRLKTNDDHIIMPDVFIPIAERYNLIYEVDK 609

Query: 773 FMLERIARDIISWRDQA-NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           +++            +          INI++     N+L E +                 
Sbjct: 610 WVIRNAFAFFAEATSRGDLNEDAIFSINISADSFFSNDLVEFIAESRKTLNVPAHNFCFE 669

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + N E +   +  LRK G S +LDDFG   S   YL  +P D VK +GS +   
Sbjct: 670 ITESCAVRNLEATSTFVTELRKQGFSFSLDDFGKGFSSFPYLKTLPIDYVKIDGSFIKSI 729

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +     ++++++  M  ++    I +    +  +  L  +G DY Q      P+     
Sbjct: 730 DKDYIDFSMVKTMRDMCYHLGLYTIGEYAETDKIVSILKDIGVDYGQGYAFQKPIPIAEA 789

Query: 950 LKLLKERF 957
           +KL  +R 
Sbjct: 790 IKLQNDRN 797


>gi|85705858|ref|ZP_01036954.1| diguanylate cyclase, putative [Roseovarius sp. 217]
 gi|85669446|gb|EAQ24311.1| diguanylate cyclase, putative [Roseovarius sp. 217]
          Length = 507

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 179/419 (42%), Gaps = 10/419 (2%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +    L   L  +      R    ++ ID Y  +++  G +  D V V    R+   L+ 
Sbjct: 76  AMRAHLNRTLSEARRTGQ-RTACFILQIDDYDILSERYGRSATDRVTVQSLDRLARALRA 134

Query: 606 PDILARLSGNRFGIILISENNSLKIADF--AIAMRKSIAMPINLLEREITVTASIGFASW 663
            D L  L   R GI L   N          A  ++ ++  PI L    + ++AS+GF   
Sbjct: 135 ADQLFDLGAGRIGIFLFPINTLELEPLLTLASRLQSAVEEPITLGATTVYISASLGFCPA 194

Query: 664 TSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSEL 720
           T +   TS  +   A  A+  A+  G + + +F             I EDL  A +  +L
Sbjct: 195 THAPTQTSDALFDAALTALDEARRHGPSAIRAFSRDLRARVQMPQHIAEDLQQAFKTGQL 254

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
              + P I     EI G EAL +W HP  G I+ +EF+ +      ++ +   ML    R
Sbjct: 255 ISWFQPQICTNTGEISGFEALARWQHPTAGLITPAEFLPLLAASGRMEVLGDAMLSNALR 314

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            + +W +     P  + +N + ++L + +L + +   + +    P+R+ +   E+V+  +
Sbjct: 315 ALQTWDNLGLDIP-HVGVNFSPEELRNPQLADKIAWELDRCNLPPTRLAVEILETVLATS 373

Query: 841 PERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIA 897
           P+      +  L  +G  + LDDFGT  + +S +       +K + S +T      ++  
Sbjct: 374 PDDVITRNIAALADMGCLIDLDDFGTGHASISTIRRFAVGRLKIDRSFVTKIDRDPEQQR 433

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++ +I+ MA+ ++   +A+ +    +   L ++GC ++Q   +  P+  ++    +   
Sbjct: 434 MVAAILSMAERLDLATLAEGVETAGEHAMLAQLGCGHVQGFGIGRPMPLDATPDWIAAH 492


>gi|218515571|ref|ZP_03512411.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 323

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 152/324 (46%), Gaps = 12/324 (3%)

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +    A P  +  R I V ASIG A+     I   E+L+ A++A+Y AK  G      + 
Sbjct: 5   ILALFAEPFKIDGRTIEVGASIGAATRDGD-IEPLELLRRADMALYRAKANGRGQAIEYD 63

Query: 697 VS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 R     ++  L  A+    +  V+ P++      + GLEAL +W  P  GN+S 
Sbjct: 64  PELDRERQQVAELEALLKTAIGTGAIEAVFQPLVSASTGMVTGLEALARWRTPA-GNVSP 122

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I A+ + ML        +W      P + + +N++   L + E    +
Sbjct: 123 EVFIPLAERCGLIDALGVHMLRTSIAHAKTW------PDLALSVNVSPVQLCNPEFAAEV 176

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +++ +  + P R+ L  +E V+M NP+++R  + +L+++GI   LDDFG   + +  L 
Sbjct: 177 ISVLQELDFDPKRLTLEITEGVLMTNPDQARRSIDQLKRVGIKFALDDFGCGYASIGALR 236

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              FD +K + SL++   E  K   +LR+ I +A  ++  + A+ I        L   GC
Sbjct: 237 QFGFDRMKIDRSLVSALDEGAKGADVLRATISLATALQIPVTAEGIETSRQAAILRDAGC 296

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D +Q   +  P+  + I   L+E 
Sbjct: 297 DQLQGYLIGKPMSAHDIAGKLQEE 320


>gi|318081637|ref|ZP_07988951.1| hypothetical protein SSA3_34162 [Streptomyces sp. SA3_actF]
          Length = 403

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 180/391 (46%), Gaps = 11/391 (2%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVM 569
             +    D +        +     +D LT +  R  FLDRL   L+         R  + 
Sbjct: 3   GALLTVRDTSLGHDLRARLRTAEREDPLTRLAGRAHFLDRLADTLEEHGLRGGRGRVGLC 62

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTR-------RIGELLKFPDILARLSGNRFGIILI 622
           V+ +D ++ +N   G  VGD +L ++          +        +LARL G+ F +++ 
Sbjct: 63  VLGLDGFRHVNTAHGHLVGDHLLRAVAARLARLAPLLASAHGEAPVLARLGGDEFALLVG 122

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                 ++ + A  + + +  P ++  R + V+AS G A   + + + +E+L+    A+ 
Sbjct: 123 ETTGPGQLTELAATVLRELREPYDIAGRRLAVSASAGVAELRARETSPAELLRAVTTALG 182

Query: 683 HAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK  G      F  +          +   L  AV + E  L Y P++ L D  + G+EA
Sbjct: 183 WAKAEGRGRWALFDSARREDGAHQDLLATALRPAVRDGEFELEYQPLVALADGTLHGVEA 242

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR-DQANMPPIFILIN 799
           L++W HP++G ++ + F+ +AE    I  +  ++L        SW+  +    P ++ +N
Sbjct: 243 LVRWRHPRFGRLAPNRFIDVAERDGSIVELGRWVLRTACAQARSWQLARPGARPPYVSVN 302

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +  + L D+++   +  ++++T   PS ++L  +ES V+G   R    L  L  +G+ + 
Sbjct: 303 VTVRQLWDSDVVADVADVLAETRLPPSLLQLELTESEVVGQTGRPLRALQELSDMGVRIA 362

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
           +DDFGT  S LSYL  +P   +K +GS + G
Sbjct: 363 IDDFGTGYSNLSYLSRLPVSVLKLDGSFVRG 393


>gi|152964994|ref|YP_001360778.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151359511|gb|ABS02514.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 770

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 210/469 (44%), Gaps = 19/469 (4%)

Query: 499 IRPMSNSNGDILRYIGIANDIT---EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
             P    +G+++ +  + +  T       S   +   A  D LTG+P R  FL+R    +
Sbjct: 298 GSPAPVRDGELVAFRTLVDQFTLAEASCASHARLSHRASHDELTGLPTRALFLERTIDAV 357

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
           D S      R +V+ ID+D +K++ND  G A GD++LV +  R+ ++     ++AR  G+
Sbjct: 358 DASVATGTGRASVLNIDLDDFKQVNDRHGHAGGDELLVEIGARMVQVCGPGSVVARFGGD 417

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++L +     ++   A A+   +  P++L    +TV ASIG ASW    +T+ ++++
Sbjct: 418 EFAVLLPAALPLPEVHALAQALCARLVEPVHLSTAVVTVGASIGVASWQP-PLTAHDLVR 476

Query: 676 NAELAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            A++AMY AK RG N VE F        +   ++++ L  AVE  E+ + Y P + L   
Sbjct: 477 CADIAMYSAKARGKNRVEVFEAGRHGDIARHRLMEDHLASAVERGEVVVTYRPAVDLTTG 536

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
             V +EA+ QWDHP  G +++ EF+ +A+    + AI   +L     D+  WR       
Sbjct: 537 RCVAVEAVPQWDHPTLGPLAAEEFLPLADRSGRLLAIGAHVLRTACADLAGWRTLPGAGE 596

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           + + +++ ++ L D    + +             + L   ++  +   + +   L  L  
Sbjct: 597 VRLAVDVTARQLTDPAFADLVLGAAGAAGVPLDALVLELVDAHDVE-ADTAHRQLRELAG 655

Query: 854 IGISLTLDDFGTKCSLLS---YLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKN-- 908
            G+ + ++ F T    L     L   P   VK +G+ +        A   +++ +A    
Sbjct: 656 RGVRVCVEGF-TG--GLDIGGALRSFPVHEVKVDGAAV--LDPGARAGSGTVLQLATAVS 710

Query: 909 --IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
             +   ++A+D+      + L   G    Q   VA  +   ++   L  
Sbjct: 711 AVLGLPLVAQDVDTPAQAELLRAAGVAAAQGRWVAPAMPRAALAGWLAR 759


>gi|253584362|ref|ZP_04861560.1| diguanylate cyclase/phosphodiesterase [Fusobacterium varium ATCC
           27725]
 gi|251834934|gb|EES63497.1| diguanylate cyclase/phosphodiesterase [Fusobacterium varium ATCC
           27725]
          Length = 611

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 166/428 (38%), Gaps = 11/428 (2%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            DN+TG+P   SF+ +    ++    +D  +  V   DI  +K +N + G   G+  L S
Sbjct: 188 FDNMTGLPTYNSFIKKAQKHIED--KNDKRKLAVFYADIIGFKSLNRIYGEKEGNRFLKS 245

Query: 595 LTRRIGELLKFPDILARLSGNRFGII--LISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            T  I           R   + F  +  +       ++++  I               + 
Sbjct: 246 FTNLIKANEF-YITACRPYADNFIELFAIPEGITLEQLSEKFIRDCNVFLQKEAHFHSKC 304

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-- 710
            +    G  S      +    +  A+      K    +    F      S     +    
Sbjct: 305 NLGFICGMCSIDDRNESIYSYISKADDVRKSLKPSLASRCGVFDEEKKASYLTKQERLRT 364

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD-HPKWGNISSSEFMLIAEELCMIKA 769
           +  A+E         P   ++  +I+G EAL++         +   +F+ + EE   I  
Sbjct: 365 IMAALEAESFIFYLQPKYNILTNKIIGAEALVRMKPSENISTLMPGDFIPLMEETGDIVK 424

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           ++  + +++   I   R + N+    I +N++ +   +    +    ++  +      I+
Sbjct: 425 LDFTIYQQVCEYIKD-RKKKNLTLFPISVNVSREHFKNPHFVQQFDYIVKSSCIESKYIE 483

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM- 888
           +  +ES    N +     +  L+ +G S+ +DDFG+  S L+ L  IPFD +K +   + 
Sbjct: 484 IEITESTFSNNLKDILNAIYNLKALGYSVQMDDFGSGYSSLNLLKDIPFDLIKLDKEFLG 543

Query: 889 TG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            G  ++K   +++ I+ + K ++  ++ + +  +  ++ L  +GC  +Q  + A P+   
Sbjct: 544 RGKISKKNKVLIKGIVELCKELKIPLLCEGVETKEQVEFLKSVGCHIVQGFYFAKPMLIK 603

Query: 948 SILKLLKE 955
              K+  +
Sbjct: 604 EFEKIYDK 611


>gi|83313197|ref|YP_423461.1| hypothetical protein amb4098 [Magnetospirillum magneticum AMB-1]
 gi|82948038|dbj|BAE52902.1| Hypothetical signaling protein CC0091 [Magnetospirillum magneticum
           AMB-1]
          Length = 893

 Score =  303 bits (775), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 183/428 (42%), Gaps = 13/428 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +         + + +   R    +    D +   D     +     +  I G +   + G
Sbjct: 456 RDTTEVTAAMRAVAAREHRIRAIMDTVLDGIVTIDEDGTILNANLSVERIFGHSLSELIG 515

Query: 448 PIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMS 503
                +  +    D       + +++G   G +     E   +  D     + + I  + 
Sbjct: 516 AN---VSVLMPEPDAGRHNGYIKNYLGTGIGAIIGVGREVMGKRKDGSLFPVHLSISELR 572

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
                   + G   D+TE K+  + +   A  D LT +PNR    DRL   + ++  +  
Sbjct: 573 VEKRR--MFTGTIRDLTENKQLAQRVAYLANHDPLTDLPNRTLLTDRLGQAVAMA-RNAG 629

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           L   ++ +D+D +  IND +G  VG+ +L    RR+ + +      ARL+G+ F +++  
Sbjct: 630 LHVAIITVDLDGFTTINDSMGHDVGNSLLRETARRLAQAVGSGGTAARLAGDEFAVVVPQ 689

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
            +   ++      +   +  P  +   E+ V   +G + +      + E+L+NAE+A+++
Sbjct: 690 VHEMDEVTRQVDHIHDILIKPYTIHGTEMVVPVDMGVSVFPRDGDDALELLRNAEMALHN 749

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K R    +  F   +S   ++R+ ++  +  A+   +  L Y P +RL D  +VG EAL
Sbjct: 750 VKRRSDQRMGYFDAAMSFAVTERMTLERSIKDALRAGQFELFYQPQVRLADYALVGAEAL 809

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP+ G I+  +F+ +AEE  +I  +  ++L +    +  W D   +  + + +NI+
Sbjct: 810 IRWRHPELGIITPDKFIPVAEETGLIVPMGSWVLRQACTQLRLWNDA-GIANLRLGVNIS 868

Query: 802 SKDLLDNE 809
            +   + E
Sbjct: 869 GRQFREAE 876


>gi|294635274|ref|ZP_06713775.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685]
 gi|291091340|gb|EFE23901.1| putative sensor-type protein [Edwardsiella tarda ATCC 23685]
          Length = 1002

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/573 (17%), Positives = 201/573 (35%), Gaps = 13/573 (2%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                    +  + ER    +   G+ V   D  +      P    + G   G   G   
Sbjct: 415 RQKQRLLDTLHQERERLHTTLSAIGEAVISSDPQQIIRFMNPSAEKMTGWPQGEAIGQPL 474

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           + +  +  ++    R++L +              + + + + + +  R+  + + +G ++
Sbjct: 475 DTVIQLQESNSGKARSVLRAGAQDEGDDENEPLSLHSREGRRYEVQSRVAELRHGDGILM 534

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y+ +  D++E +  L  +  +A  D LTG+PNR SF   L   L  +         ++ 
Sbjct: 535 GYVVVFQDVSETRTLLRQLSYSALHDPLTGLPNRVSFEQALRRALRGAIEYHQRHV-LVF 593

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+D +K IND  G A GD +L  L + +  LL+  D LARL G+ F +IL     S   
Sbjct: 594 LDLDYFKSINDNAGHAAGDRLLQDLAQLMRSLLRPQDTLARLGGDEFALILCDCELSQGK 653

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 + +  A P     ++  + AS G          + E +  A+ A Y AKHRG  
Sbjct: 654 LMVDQLIHEIAAYPFPWQGQQYHIGASAGLTQLQHDNALADETINQADAACYQAKHRGRG 713

Query: 691 HVESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWD 745
                                 + L   + ++   L+   +      ++I      ++  
Sbjct: 714 RAFCHSPQRSPHSAAARSEPTADQLSALLADARFTLLLRAVCPRDTPQQIDFYLLDLEAC 773

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                  +S  F          + +  ++L ++         Q       + + I++  L
Sbjct: 774 QDDGTPYTSQAFTTACLRHQRQQEVEHWLLSQVLEQHAECLSQQPQA---LAVAISTASL 830

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                   +   + ++     R+ L   ES ++    ++   L  LR+ G  L  + F  
Sbjct: 831 GQPAFVRWLCDALERSPLPADRLWLRLEESALIEQQTQTAPALAALRRYGCRLIAEGFER 890

Query: 866 KCSLLSYLGYIPFDTVKFNGS-LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
               ++ L +   D +    S L+  +        +L  +   A +     IA       
Sbjct: 891 HLENIARLEHCQIDYL-IASSGLVAQAHANRMDEMMLSLLHTQAHSYGIQTIAGPAELPA 949

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  L  +G D +  S +   +     LK L  
Sbjct: 950 TLATLNMLGIDLLFGSCLHPTITLTQQLKRLAA 982



 Score = 97.3 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 109/385 (28%), Gaps = 37/385 (9%)

Query: 175 LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISI 234
           LW P  +   V   T  R        LLAI L    +    +        A +  G   +
Sbjct: 46  LWLPTAFTCAVLFHTPRRYW----PLLLAIALVSSLLPLPLTTAHYGLLHALIDQGQAWL 101

Query: 235 DFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK------------- 281
               L +L+        +      I      I  L   L      A              
Sbjct: 102 GAAVLRRLLPAQRPFDTLAHWLRFILSVVVAIPLLCAVLSTLSHTAATNTFITQFSSDFL 161

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVL--------------YYTYFII 327
              +    +  + +L   ++        +    L   +L                   ++
Sbjct: 162 SDALGMLALTPLGLLAGPAWPTRGRIPCLTLPILVLTLLSDYFALPRLPYPFTIVLIPLL 221

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +  +        LI A   + +      +++     +    P L+   +L+V+L    + 
Sbjct: 222 WAAIALPLWPAFLIFACSALLLCAQMNHLSLGTHTPD----PLLLYMPILLVLLPAHAIA 277

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
               A     Q +  +  R    +  S       D+  + +   P +  +LG  + ++  
Sbjct: 278 IQTQAYRRERQRLQENETRLRNVMEYSAIGTALIDLQGEWIQCNPALCQMLGYEASTLMS 337

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               +   +H  DR + +    + +         E R    + Q  W ++ +  + N   
Sbjct: 338 MP--YQQRVHPEDRQSDKRQQAALLAGYLDSYTLEKRYLHRNGQAIWTLLTVSLVRNPRA 395

Query: 508 DILRYIGIANDITEQKKSLEGILCN 532
           + L ++    +I + K +       
Sbjct: 396 EPLYFVMQVKEINDIKNNQRQKQRL 420


>gi|317133423|ref|YP_004092737.1| diguanylate phosphodiesterase [Ethanoligenens harbinense YUAN-3]
 gi|315471402|gb|ADU28006.1| diguanylate phosphodiesterase [Ethanoligenens harbinense YUAN-3]
          Length = 274

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 114/258 (44%), Gaps = 6/258 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A++N    L Y P + L   ++ G E L++W  P    +    F+  AE   +I
Sbjct: 20  EALLRDALQNDRFTLAYQPQVDLQTGQLDGAEVLLRWLPPTGAPVLPPAFIPTAEATGLI 79

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L         W    N  P  + +N++ +     E  E + A + +T   P R
Sbjct: 80  HPIGEWVLRTACGQTHRWNA--NNRPFRLAVNLSPRQFSRAE--EIVLAALRETGLDPGR 135

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E  V  +   +  +L RL  +G+ L LDDFGT  S L YL  +P  T+K + S 
Sbjct: 136 LELEITEQSVAEDLPAAAGVLRRLNALGVRLALDDFGTGYSSLQYLARLPVHTLKIDRSF 195

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G   T K   I+ +II +A  +   ++A+ +        L R GCD  Q    + PL 
Sbjct: 196 VAGMIRTAKARIIVENIIRLAHGLSMRVVAEGVETPGQRDLLRRQGCDLAQGFLYSRPLA 255

Query: 946 FNSILKLLKERFPLVKNT 963
              +  LL    P V+  
Sbjct: 256 GKKLRMLLTRPEPCVQTA 273


>gi|300713240|ref|YP_003739279.1| Diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299060311|emb|CAX53561.1| Diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 592

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/491 (22%), Positives = 208/491 (42%), Gaps = 29/491 (5%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK---KSLEGILCNA------------- 533
            +         P+  S G +L  + +  D +  +   +  E +   A             
Sbjct: 105 GEPFIRFYAGAPLRTSEGVLLGTLCV-TDTSPHRFSSRKSEMLEILAGLVMTFLETWHSA 163

Query: 534 -FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            F D +TG+PNRQS L  +       A +      +  ID+ K  ++   +G+   + +L
Sbjct: 164 GFTDPVTGLPNRQSLLREMQRRAATDAKNRLRLVILDCIDMQKIYELARSMGMLPVESLL 223

Query: 593 VSLT--RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
             +    R+   L   D+L  ++  R+  +L  E   L  + F+  +       +     
Sbjct: 224 RDVGMLLRLRLRLPPGDMLYTVATGRYA-VLTEEAQQLTASSFSTQLEDV--TALIEEGI 280

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKE 709
            + +T   G A +  S++++ E L+ A  A++ A   G             R+    +  
Sbjct: 281 AVDLTIHAGEACFALSEVSAQEGLRRAVSALHEAISSGSRVLSFDALTDGRRNGEFRLMH 340

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           DL  A  +   LYLVY P   L+  ++ G+EAL++W HP  G +S   F+  A    +  
Sbjct: 341 DLAAALRDEPGLYLVYQPKKSLITGKLTGVEALVRWRHPTRGELSPDAFLPAAARTRLHA 400

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           ++  +++  ++  ++ W+      P  + +N++  D       + + + + K   +P  I
Sbjct: 401 SLADWVIRNVSSQLVQWQAAGISVP--VSVNLSESDFTRKGFADTLHSDVLKAGLTPDLI 458

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++   E+  +   E +   L  LR+ G  + LDDFG   S +SYL  +P D +K +  L+
Sbjct: 459 EIECLETEKIAEKEGAVSALIALRERGFKIALDDFGAGYSNVSYLYRMPLDVIKLDRVLV 518

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G    ++   I  ++I M K +E T++A+ +      + LT  GCD IQ  + + PL  
Sbjct: 519 RGIVTDKRSRIIATNVIRMLKELEYTVVAEGVEDRATEEILTAAGCDQIQGYYFSRPLPA 578

Query: 947 NSILKLLKERF 957
             I  LL   F
Sbjct: 579 KDISSLLSRSF 589


>gi|311693753|gb|ADP96626.1| signal transduction protein containing a membrane domain, an EAL and
            a GGDEF domain [marine bacterium HP15]
          Length = 1253

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/434 (20%), Positives = 174/434 (40%), Gaps = 11/434 (2%)

Query: 526  LEGILCNAFQDNLTGIPNRQSFLDRLTTILD-LSATDDNLRPTVMVIDIDKYKKINDVLG 584
               +   A  D LTG  +R  F  +++ ++  L ++ ++    +MV+DID++  IN   G
Sbjct: 807  YRKLNFQATHDALTGCMHRHDFEKQVSQLISILPSSAEDHAAALMVLDIDEFSVINASYG 866

Query: 585  IAVGDDVLVSLTRRIG---ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
               GD +L  +   +    E       + R+SGN F +++ + +    +       R   
Sbjct: 867  ADAGDALLRHVADTLRKQSESRFSESHVGRISGNEFAVLINNISTEDCLDFAESLRRNFE 926

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE--SFRVSS 699
                   + E   T SI     T +  +  ++L  A L++  AK  GGN +E        
Sbjct: 927  QHVFRHGQAEYRATVSISIRPVTGAGQSPGDLLNLASLSLKAAKKLGGNRIELARENRDQ 986

Query: 700  FRSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEF 757
             R        ++   + +  LYL   PI+     D E    E L+         IS   +
Sbjct: 987  SRLGTPQWVTEIDRTIRDGSLYLRAQPIVALEPEDGEGTMYEVLLGLKDSSGKEISPQGY 1046

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            +  AE+      ++L+++  +   +             + +N++   L D+    G+++ 
Sbjct: 1047 IEAAEQFKRSTRVDLWVISEVLTWMRDNPAALARIA-TLNVNLSGSSLSDDSFMLGLESN 1105

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +        ++    +E+  + N   +   +  ++++     LDDFGT  S  +YL  +P
Sbjct: 1106 LRANPELAHKLCFEVTETSAVANLHFASDFMREMKRLNCRFALDDFGTGLSSYAYLQKLP 1165

Query: 878  FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D VK +G  +          A++RSI  +   ++   IA+ +     +  L  +  DY 
Sbjct: 1166 VDFVKIDGIFVKDMATNLTNYAMVRSINELCHFLDLQTIAEYVEDMEIMDTLREIQVDYA 1225

Query: 936  QDSHVASPLGFNSI 949
            Q   +A P   +S+
Sbjct: 1226 QGFAIAKPRRLDSL 1239


>gi|92115378|ref|YP_575306.1| diguanylate phosphodiesterase with GAF sensor [Chromohalobacter
           salexigens DSM 3043]
 gi|91798468|gb|ABE60607.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 669

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 194/440 (44%), Gaps = 9/440 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +            D  T +  +Q F   +   L+ + +DD+    V  +D+   + I  
Sbjct: 224 MRLERARAEIGTQFDPQTRLATQQRFQQLIEARLN-ALSDDDTLCGVAAVDLYGMRAIRT 282

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              + V ++VL+    R+ + L      LAR+  ++   +L+   ++ ++A    A+  +
Sbjct: 283 RFSLQVSNNVLMRCIARVEKALDGFVFDLARID-DQRLGVLLYRGDATRMAATMEALATT 341

Query: 641 IAMPINLLEREITVTASIGFASWTS---SKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           +  P     + +T  A + +A               L++    ++  +      +++  V
Sbjct: 342 LRAPYIAAGKTVTAAARVVWAHDAPRLGHADDILSALQHTCRRLHSERGADLFRLDTPEV 401

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               + R +++     A+      L Y P + + D  + G EAL++W   + G ++  + 
Sbjct: 402 LPRLTRRNLLRRRTASALAEDRFCLHYQPQVSVRDFRVHGFEALLRWHDTELGWVNPQDI 461

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE+ +   +++++L R+ R +  WRD+ +   + + +NI+ + L      +   AL
Sbjct: 462 VDIAEEIDLGDQLDIWVLRRVMRQLSVWRDRGHDV-LPVALNISQEQLARPAFADRFCAL 520

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++       +KL   E  ++ +PE     + RL++ G+   +DDFGT  S L+YL  IP
Sbjct: 521 LAQYRLPGRLLKLEVLERSLIDDPEAIIESMQRLKRHGVGFAIDDFGTGYSSLAYLTRIP 580

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FDT+K + S +    +     +++RSII + ++    ++A+ +  +  ++ L    C  I
Sbjct: 581 FDTLKIDKSFIERIGDDPRVGSLVRSIISLGRDAGMHVVAEGVETDAQVQRLRDFHCHSI 640

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    +  L       LL  
Sbjct: 641 QGHVFSGALPPTHAEALLHN 660


>gi|154175526|ref|YP_001407634.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Campylobacter curvus 525.92]
 gi|112802294|gb|EAT99638.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Campylobacter curvus 525.92]
          Length = 750

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 186/442 (42%), Gaps = 10/442 (2%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E   +   +   + +D LTG+ +R   ++ L    D    ++     V  I+I  +K IN
Sbjct: 304 ELMLANLRLQDISDKDYLTGLGSRSFLMNELKRASDELQANE--ELAVYYINISHFKAIN 361

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRK 639
              G  VGD +L +  RRI  +    +  AR+  + F +I  +   +  K   F I+++ 
Sbjct: 362 ASYGHEVGDKILKTAARRITGICNRQETTARIGADEFIVISKMELGSETKRMKFGISLKD 421

Query: 640 SIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +I  P+ +      +   IG    T  SK     ++KNA+ AMY+AK    ++   +   
Sbjct: 422 AIEEPMQIDRYHFAIKCVIGIHIVTQKSKAEPRAIIKNADRAMYYAKENPASNPMVYNDE 481

Query: 699 SFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +  M++  L  A    +  + + P+  L    IV  EAL++W    +G + +S+
Sbjct: 482 IDNKIHLDSMLEIALRKANLQKDFQMYFQPVFDLDTSRIVCAEALLRWYSKDYGLMEASD 541

Query: 757 FMLIAEELCMI-KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           FM IA     I  +I +    +    +  W+      P  I IN+A+             
Sbjct: 542 FMGIARGSGDILNSICMNATLKTVEHVSRWKKDMLNIP-KISINVATTQSTSENFIHSFL 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +      SP   +L F E + M  PE    +   L+   I + +DDFG+  + L Y+  
Sbjct: 601 QMTKNFGVSPRSFELEFCEVLWMNPPEILDKIFELLKSNEIDVCIDDFGSGYTSLMYIRK 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              + +K     +T    ++    I+  II +A +++ T  AK +     + EL ++ C 
Sbjct: 661 YSINRLKIAADFVTQMAFSKIDAQIVAGIINLANSMKLTSAAKGVQDVEILDELRQLKCK 720

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
             Q  ++A P+      + L++
Sbjct: 721 EGQGYYLARPMSAEEFEEFLRQ 742


>gi|261340514|ref|ZP_05968372.1| putative sensor-type protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317608|gb|EFC56546.1| putative sensor-type protein [Enterobacter cancerogenus ATCC 35316]
          Length = 1109

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/567 (18%), Positives = 209/567 (36%), Gaps = 13/567 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+  +     P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVLCTDVDMNVTFMNPVAEKMSGWPQSEAIGQPI- 600

Query: 452  WLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L  +HI   +    + +       R  ++ +  +   +     +   I P+S  +G  +
Sbjct: 601  -LNVLHITFGEKGPLMENIHSGDMSRSDIEQDVVLNCRNGGSFDIHYSITPLSTLDGQAI 659

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + +  D+TE +K L  +  +A  D LT + NR SF   L  ++         R  ++ 
Sbjct: 660  GSVLVIQDVTESRKMLRQLSYSASHDALTHLANRVSFETHLKRLIQTVQETRQ-RHALIF 718

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G A GD +L  L+  +  +L+  D+LARL G+ FG++L   N     
Sbjct: 719  IDLDRFKAVNDTAGHAAGDALLRELSSLMLTMLRSSDVLARLGGDEFGLLLPDCNIESAR 778

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                  +            R   + AS G      +   ++E++  A++A Y +K+ G  
Sbjct: 779  YITGRLIHAINNYHFMWEGRLHRIGASAGITLIDETNHQAAEVMSQADIACYASKNSGRG 838

Query: 691  HVESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             V  +     R       + + E   +  +N  L +        + E        ++   
Sbjct: 839  VVTVYEPQQERIHSARSMMSLDEQWHMIKDNHLLMIARSVASPRIPESSNFWLISLRLWT 898

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +        F     E  ++ A++  +     R   +      M    + + ++   L 
Sbjct: 899  SQGEVQEEQAFRSGLAEPELLHALDRRIFSEFFRAYAAQVAAKGMG---VALPLSQAGLS 955

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
               L + +  L+ K  +    + L  S  V+    E  +  L +LR  G  + L   G  
Sbjct: 956  SVTLVDELIELLEKGPFPGRLLHLIISAEVLRNTDENLQQGLQKLRHAGCRVVLSQVGRD 1015

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             SL S+L     D +  +  +++          ++  I   A+ +    +A      I +
Sbjct: 1016 MSLFSHLSANMADYLMLDPDVVSNVHGNLMDEMMVTIIQGHAQRLGMKTLAGPCNQPIMM 1075

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILK 951
              L+ +G D+I    +  P     +L 
Sbjct: 1076 DTLSGIGIDFIYGDTIGEPQPLELLLN 1102



 Score = 95.0 bits (235), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/394 (12%), Positives = 108/394 (27%), Gaps = 38/394 (9%)

Query: 167 TPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAW 226
            P      +    FY+   ++  ++ GI +  +    +   + +    S   I T     
Sbjct: 44  APLWFPTSIMTVAFYR---HAGRMWPGIALACSFGNVLASWMLF-SWGSVSFIYTSV--- 96

Query: 227 VVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL-HWNRWHAKVGYI 285
             +    I    L KL+   +    +         S+ +       L H+     +    
Sbjct: 97  -NIIEACIGALLLRKLLPWYNPLQNLNDWVRLAIGSALIPPLTGGVLIHFLAPGPEPLRN 155

Query: 286 TFSGIA-----CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK------GY 334
               +       +A++     + P          L    L      +             
Sbjct: 156 FLVWVVSESIGALALVPLGLLFKPHYLLRHRDPQLLLETLVTMAVTLVLSWAAMNWLPWP 215

Query: 335 ERAVLLIPAWIL--------IFIWFIGLWMAITKRLDNDIIQPALVGGLVL-------IV 379
              V+++  W            ++ + + M       N           +L       ++
Sbjct: 216 FTCVIVLLMWSAVRLPRVEAFLVFLVTVMMVSLMMAQNPTPVATPNASAMLNAPWLPFLM 275

Query: 380 ILIGFTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +L+   V+  V+      +  I    ER   A+  S   +    I    +     +   L
Sbjct: 276 MLLPANVMTMVMYAFRAERKHITESEERFRNAMEYSAIGMALVGIDGQWLQANKALCNFL 335

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G +   +      +       D  +    LD  V         E R    D +  W ++ 
Sbjct: 336 GYSQTEL--QSMTFQQLTWPEDLHSDIEQLDQLVNGDINNYSLEKRYYTRDGEVVWALLA 393

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           +  + +++G  L +I    DI + K +       
Sbjct: 394 VSVVRHADGTPLYFIAQIEDINDLKHTEWVNKRL 427



 Score = 85.4 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+WD+  D ++    +  +  +    +    + W   I   DR +
Sbjct: 428 MERITLANEAGGIGIWEWDLQPDVISWDKRMFELYEIPPH-IKPTWQLWNASIVPEDRAH 486

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++   +  R    + EFR+R  +     +      + N  G++ R +GI  D+TE K
Sbjct: 487 AEQVIRDSLKARM-PFKLEFRIRVKEG-VRHIRSLANRVLNKQGEVERLLGINMDMTEVK 544

Query: 524 KSLE 527
           +  E
Sbjct: 545 QLNE 548


>gi|307721465|ref|YP_003892605.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979558|gb|ADN09593.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 618

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 182/417 (43%), Gaps = 29/417 (6%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+PNR++ ++         A  +    ++++I+ID + +IND+ G   GD VLV
Sbjct: 219 YTDALTGLPNRRALIE---------AKKEEKHFSLLLINIDTFSQINDLYGEKFGDKVLV 269

Query: 594 SLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
             ++ + E L         RL+G+ F ++    N+     +  + +      P+++  ++
Sbjct: 270 EFSKFLLENLKKNPECKFFRLNGDEFVLLSKETNHDAIKHNVELLIHGIHQHPLHIDGQD 329

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVMIK 708
           I +  ++G +        +  +L  A +A+  AK    N +        +    + +   
Sbjct: 330 IYLNITVGVSF-----EETELLLPTANMALKLAKKESKNIIFYSDEASLNEEYENNLKWI 384

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +++  A+    + + + PI+      I   E+LI+    +   I+   F+ IA++  + K
Sbjct: 385 QEIKDAILEDRIVMYFQPIMDNSTNTINKYESLIRLVDRQGNIITPWHFLEIAKKAKLYK 444

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++++         D          +N+  +D+LD ++   +  ++ +     +R+
Sbjct: 445 KLTKIVVKKSF-------DAFKDNTYEFSVNLTIEDILDKDIKSFIFNMLEEYNI-GNRV 496

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + + +     +  ++K G  + +DDFGT  S   YL  +  D +K +GS++
Sbjct: 497 IFEIVESESIEDFDEIEKFIHEVKKYGCKIAIDDFGTGYSNFEYLMKLQADFIKIDGSII 556

Query: 889 TGSTEKRIA-ILRS-IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
               E + + IL S I+  AK +    I + +  +    +L  +G +  Q  +   P
Sbjct: 557 RTIVEDKRSEILTSVIVAFAKEMNIKTIGEYVETKAIQDKLVELGVNKSQGYYFDKP 613


>gi|256821446|ref|YP_003145409.1| diguanylate phosphodiesterase [Kangiella koreensis DSM 16069]
 gi|256794985|gb|ACV25641.1| diguanylate phosphodiesterase [Kangiella koreensis DSM 16069]
          Length = 753

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 188/440 (42%), Gaps = 16/440 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++  + IL     D  T +PN+ +F++++   L LS  +  L   +++I   +   +   
Sbjct: 303 RRIYKPILRQIQMDYHTDLPNKNTFMEQMHK-LTLSNLNHGL---LVIIQFKRMTSLLSG 358

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI--SENNSLKIADFAIAMRKS 640
               V + +     +RI        I+  ++ ++  I +   +  NS  I      +   
Sbjct: 359 YSPDVINSIQHQTLKRIKNSFSRDYIVGSIAHDQLAIFVPFRNTPNSQFIDRRLQHLSAV 418

Query: 641 IAMPINL----LEREITVTASIGFASWTSSKITSSEMLKNAELAMYH-AKHRGGNHVESF 695
           +  P+++     E+E+    ++    +        +++  A +A+         +     
Sbjct: 419 LNNPLHISHDGQEQEVVTPINLASVCYPEDG-GVFDLIHKANIALSTLENTSAKSTQYHS 477

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG-NISS 754
                 +    + +    A++N+EL LV+ P I      I G+E   +W   +    IS 
Sbjct: 478 NSIKQLATESNLVQAFHHALKNNELSLVFQPQIDCETSSITGVEVFSRWYSKQLNRAISP 537

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I+  ++++L  +  +I SW       P F  IN++S +L D    +  
Sbjct: 538 LVFVQLAEKHHLIREFSIWLLHSLFENISSWLKSELPAPKF-AINLSSLNLHDPVFMKQF 596

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             L+         +++  +E + +         L +L+  GISL +DDFGT  S LSYL 
Sbjct: 597 FQLLKNYRIPAEILQIEITEHISLEFFPEDNNALTQLKNHGISLAIDDFGTGYSSLSYLK 656

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           ++P DT+K + S +     +   +AI ++II + +     ++A+ +  +  ++ L + GC
Sbjct: 657 HLPIDTIKIDRSFIKSLPNSYSDLAISKAIIDIGREFNLDVVAEGVETQAQLQLLKQHGC 716

Query: 933 DYIQDSHVASPLGFNSILKL 952
            +IQ    + PL    +   
Sbjct: 717 YHIQGFLFSEPLSAQELKDF 736


>gi|325685266|gb|EGD27381.1| hypothetical protein HMPREF5505_0959 [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 903

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 180/466 (38%), Gaps = 23/466 (4%)

Query: 498 RIRPMSNSNGDILRYIGIAND-ITEQKKS--LEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
               +  + GD+   + IA + I  QK+    E    N F D +TG+PN   F    ++ 
Sbjct: 314 SAVRLDMAEGDVTAQLRIAEEKIYHQKRDLDGEMRENNFFVDKVTGLPNTNYFHSFASSY 373

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L       + +P V++I+I   +  N+  G   GD +L  + + + +      ++ R + 
Sbjct: 374 LKSCLEKGD-QPAVVLINISNMQAYNNRYGFEKGDQLLSRIAQILQKFFADGVLV-RFAE 431

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F            +A  A  + KS+      + +    +   G   +  +       +
Sbjct: 432 DNFL-----------LATDAPDLLKSLEEAAAEVNKVTDASIRAGVYRYKDASEGLMTAV 480

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLM 731
             A+ A+ +  +      + +     +        ++     A++   +   +    R +
Sbjct: 481 DKAKRALRYLNNNRAVVCQVYNQEVKQEFERRGYVLEN-FQKALDEGWIRPYFQLESRSL 539

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              I G EAL +W  PK+G +    F+ + EE  ++  ++L ++ ++   +   R +   
Sbjct: 540 TGRICGAEALARWVDPKYGVLGPGFFIEVLEEAHLVHKLDLAIIRQVCAMLAR-RREEQQ 598

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
           P + I +N++  D     +   ++ +        S +K+   ES V   P+  R  +   
Sbjct: 599 PLVPISVNLSRVDFQVCNIYAEIEKIRRYFNLPASLLKIEILESTVTSKPQELRQAIANF 658

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNI 909
              G  + +DDFG+  S  + L    FD +K +   +     +  A  ++  ++ MAK +
Sbjct: 659 HASGYEVWMDDFGSGYSNFNNLDEYDFDLLKIDMVFLRDFGSRSKAKTLISIVVDMAKKL 718

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
               + + +  +     L  +GC+  Q    + P+     L  L  
Sbjct: 719 GLHTLCEGVETQEQADFLREIGCERQQGYLFSKPISEEEFLVKLAA 764



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 58/141 (41%), Gaps = 3/141 (2%)

Query: 548 LDRLTTILDLSA-TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF- 605
            ++L + L        +    ++++D++  + IND+ G + GD VL ++++ +G+L +  
Sbjct: 202 REKLKSYLKSIQWRGASSDYYLVLVDMNGLRSINDIYGRSEGDQVLFAVSQAVGQLAEKM 261

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
                   G+ F  ++    +  +       +++ +    ++    +             
Sbjct: 262 HGFSCHYGGDEFLAVV-KLADDAEAKRVFDDLQEEVKHMASIQGLPVVPQLVTSAVRLDM 320

Query: 666 SKITSSEMLKNAELAMYHAKH 686
           ++   +  L+ AE  +YH K 
Sbjct: 321 AEGDVTAQLRIAEEKIYHQKR 341


>gi|16332199|ref|NP_442927.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1000118|gb|AAB41278.1| orf 421 [Synechocystis sp. PCC 6803]
 gi|1653828|dbj|BAA18739.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 421

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 3/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I  DL + +   +++L Y P + + +  + G EALI+W HP+ G +S   F+ IAE+  
Sbjct: 160 EIWRDLEVGLNTGQVFLFYQPKVSIHNHCLAGCEALIRWHHPRKGFVSPGLFIPIAEKTG 219

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +  +++E + R    W+ Q    PI + INI+++     +L   ++    K   SP
Sbjct: 220 FISVVGEWVIETVLRQCQQWQYQGLD-PIQVAINISARQFHGEDLICILRLGTHKYDVSP 278

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            ++++  +E++++ N + S   L  LR  G S+ +DDFGT  S LSYL   PFD +K + 
Sbjct: 279 QQLEVELTETLLVKNVQDSIKQLNELRAEGFSVAIDDFGTGYSSLSYLQQFPFDVLKIDQ 338

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +    +      I  SII +A  +E  + A+ +    +   +  MGCD +Q    + P
Sbjct: 339 SFVRHIDKNAKNKTITASIINLAHELELRVTAEGVETWAEYDTIAHMGCDELQGYLFSRP 398

Query: 944 LGFNSILKLLKE 955
           L      +LL  
Sbjct: 399 LPVADFTELLSR 410


>gi|325264578|ref|ZP_08131308.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. D5]
 gi|324030240|gb|EGB91525.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. D5]
          Length = 539

 Score =  302 bits (773), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 185/431 (42%), Gaps = 23/431 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K  +     ++ D+LTG+ NR SF+      L     ++      + +DI+  K  N 
Sbjct: 124 LQKMQKQQEYLSYHDDLTGLLNRNSFV----GYLSEVKQEELKSLGALSVDINGLKNFNK 179

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+V++ +   + E      ++ RL+G+ +  I+ + +    +     A  K  
Sbjct: 180 EFGREYGDEVVIRVGEVLEEYF-RGAMVFRLTGDEYLAIMENVDYEEFMKSVHGAHSKL- 237

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                     I++  +    +W    I    ++ +AE  M   K +       ++     
Sbjct: 238 --------ENISLGLTTMGYAWEKVDIDVDSLVAHAEGMMREEKQK------YYKNLKKG 283

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               +IKEDL   +      +   P + ++ EE+VG EA++++ H   G +   +++ + 
Sbjct: 284 HHEPIIKEDLLEDIRQGNFIVCLVPKMDVVTEEVVGAEAVVRYHHKDLGIVDPGKYITLL 343

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +   ++L++ E + + +  W +  +MP + + +N A   L    + E M  L+ K 
Sbjct: 344 EETKLSHFLDLYVFEEVCKTLRRW-EMDDMPMLPVSVNFAGATLRQESVAEKMLGLVEKY 402

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   +++  SES    N E       ++RK  + + LD FG K S  S L  + FD +
Sbjct: 403 HVSCEYLEVEVSESYADMNQEMLAETSNKIRKENVRVVLDHFGAKDSSFSILSIMEFDGL 462

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + SL+       +   + +++I + + +   + A  +  +  +  L  +GCDY Q + 
Sbjct: 463 KLDRSLVANIVGNSRSQIVAKAVIDVCRQLGVHVAAAGVETQDQLNVLKELGCDYAQGTL 522

Query: 940 VASPLGFNSIL 950
              P+  ++  
Sbjct: 523 FNKPITIDTFE 533


>gi|152990316|ref|YP_001356038.1| hypothetical protein NIS_0567 [Nitratiruptor sp. SB155-2]
 gi|151422177|dbj|BAF69681.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 1109

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 176/424 (41%), Gaps = 19/424 (4%)

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            + +++T +PN+ S    L         + +    +++++I  + K N   G   GD +L 
Sbjct: 698  YFNHITKLPNKNSLFHDLQ--------NCHDNYLLVLVNIKDFSKFNLNFGFEFGDKLLQ 749

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            S+   +   L     L  +S + F  +++  +           ++K     I + E  I+
Sbjct: 750  SIAHLLSSFLDENRGLYHVSADHFA-LIVKVSEKDDAIQLLDEIQKVAKSGIIVDEVTIS 808

Query: 654  VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
            V  + G             + +  ELAM++ K      +    +     + +  +E L  
Sbjct: 809  VILNGGAVF--DGGEEPKRVYRKCELAMFYGKRSNSFQIFQDWMEEHTKEYLHYEEVLLR 866

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
             +   +  L Y PI  L        E L++    + G  +  + + +A EL  ++ +   
Sbjct: 867  LLNQKDFLLYYQPIYNLKSNRFETAEVLLRVP-GEKGFYNPEKIVEVANELGYLQDLTRV 925

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +LE+   +I   ++      +    N+   DLL+ +    ++ L+ +       I L  +
Sbjct: 926  ILEKGIAEIAQMQNM-----LRFAFNVNVSDLLNKDFLPFLEDLLLRHQLGTDTIALELT 980

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
            E  V+ N E  + ++ RL++ GI++ +DDFG   S    + ++ F  +K + SL+ G   
Sbjct: 981  EKDVIANYEVLKPVITRLKERGIAMEIDDFGVGHSNFKEVVHLDFQILKIDKSLIDGMID 1040

Query: 892  TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              K   I+  +I  +K      +A+ +     +  L +MGCDY Q  + A P+    +++
Sbjct: 1041 DSKSREIVGFLILFSKEFHMQSLAEGVETHEQVDFLKKMGCDYAQGYYFAKPMPKERLVE 1100

Query: 952  LLKE 955
             LK 
Sbjct: 1101 FLKR 1104



 Score = 65.7 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 17/162 (10%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
              A    ++      G  V   +       Q       R    +  S  +V++ D+   
Sbjct: 383 TVYATSQTILFRGKSAGLIVFVDITKEAELQQ-------RFEKLLEVSPLVVYEVDVDTK 435

Query: 427 RV-----TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
                    +  +    G     +      W+  IH  D+               G L++
Sbjct: 436 EHKEILNYVSQSLKKYTGFEQTDITSSW--WMENIHPQDKKEVLEKQKELFTN--GSLEH 491

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +R +  D  + W+  R+  +   N + +R +G   D T+++
Sbjct: 492 TYRFKTKDGPYIWIKDRVYVIQ-KNDENVRLLGFWIDKTKEQ 532


>gi|238763587|ref|ZP_04624548.1| hypothetical protein ykris0001_8030 [Yersinia kristensenii ATCC
            33638]
 gi|238698219|gb|EEP90975.1| hypothetical protein ykris0001_8030 [Yersinia kristensenii ATCC
            33638]
          Length = 1113

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 107/581 (18%), Positives = 222/581 (38%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 533  ILRLMGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCTDQDMKITFMNPVAEKMTG 592

Query: 440  LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
             A+    G    + +      D       ++  + +R    L     +   D  ++ +  
Sbjct: 593  WANTIALGQPVHHIIKLTDGVDGPKIDKPIEHCLTHRPYSSLNESMVLHHRDGHYYDIQE 652

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    G I+  + +  D+ E +  +  +  +A  DNLTG+PNR +F ++L   +  
Sbjct: 653  SVAPLKTLEGTIVGAVLVFQDVGESRAMIRKLSHSASHDNLTGLPNRANFDNKLKAAIQK 712

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S  D + +  +  +D+D +K +ND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 713  SV-DFDQQHALAFLDLDYFKAVNDTAGHPAGDALLKELSQLMRQHLRNSDCVARLGGDEF 771

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 772  GLLMLNCTLPHAKAITQGLVSIINGYHFYWEDKLYRIGASAGVTQISSSNSQRSEIMAQA 831

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMI----KEDLCLAVENSELYLVYHPIIRLMDE 733
            ++A Y AKH G   V  ++    +          +ED+   +  ++L L   P       
Sbjct: 832  DIACYTAKHSGRGQVYLYQPRQKQLLTRQHPLISREDVESILRENQLLLQITPTAPPKTP 891

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +   + + P+   +S S F   A    +   I+ ++ E+    ++      +  
Sbjct: 892  LSVCFYQVSFKINRPQNIALSQSAFEEAAALHNLRPEIDHWICEQ---LLVKHAPTLHHK 948

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  +  + +   + +T   P  +     ES ++  P      L +L+
Sbjct: 949  GLSLAIPLSEVALLKEDFRQSLLIFLQQTPLPPQSLYWMVDESTLLQYPFAIGNFLAKLQ 1008

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            + G  L + +FG   +    L     D +KFN  L+           ++  I   A   +
Sbjct: 1009 QQGCKLIVKEFGHSLNDFELLAAHTIDYLKFNSDLIAHIHINQMDEVLISIINGTAHRAK 1068

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +A        + +L  +G D      +   L  +  L 
Sbjct: 1069 IATLAGPAELPPILSKLIDIGVDLADGETIGRTLPLSEALN 1109



 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 122/387 (31%), Gaps = 56/387 (14%)

Query: 193 GIIIGVASLL---AIFLTI-----FYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
            + +G   LL     F         + +    +   T       L Y+   F F+   + 
Sbjct: 169 MLALGPVGLLYRRGYFNIATKTKALFDMTWIMIFSLTACYI--SLIYLPYPFTFVIMTLI 226

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMY-LHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
             S  L  +   +   L++ LI  +  + L   +   K+    FS I  + +L       
Sbjct: 227 WTSIRLPRFETFTLCFLATLLIAMMINFNLFTLQADPKLSIQAFSFIPLLMVLIPPHAMA 286

Query: 304 PMVTASI------------ARITLASIVLYYTYFII-YHGMKGYERAVLLIPAWILIFIW 350
            ++ A               R  +    +           M+  +    L+     I + 
Sbjct: 287 MVMHAFHMEKKHIIESENRFRNAMEYSAIGMALVSPEGQWMQVNKALCKLLGYRQEILLT 346

Query: 351 FIGLWMAITKRLDNDIIQP------------------ALVGGLVLIVILIGFTVIQHVLA 392
                +   + L  D+                        G +V  ++++          
Sbjct: 347 LTFQQITYPEDLTADLKLLDDLYYGRIPSYSMEKRYIRSDGEVVWALLVVSVVRDHEQQP 406

Query: 393 TGYFSQ-----GIFSDG-------ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
             Y SQ      +           ER +LA   SG  +W+ DI + +++    +  +  +
Sbjct: 407 LYYISQVEDINDLKKSEIVNRRLMERITLANEASGIGIWELDIRKQQISWDKRMYELYHV 466

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              ++      W  YIH +D +       + +  R+   + EFR+   +     +  +  
Sbjct: 467 PLDTLVDN-DIWQQYIHPDDINRVNREYSAALNQRK-PYRLEFRLLLPNGDIVHLRNQAN 524

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + +  G+ILR +G   D+TE +   E
Sbjct: 525 MVCDKEGNILRLMGTTLDMTEIRNLTE 551



 Score = 97.7 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 93/307 (30%), Gaps = 18/307 (5%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
                Y++   G  ++++ L      +  A   +AL    +++   Y +       +  +
Sbjct: 141 LAAAWYLAPQNGSFTQVLTLWF----MSEAIGMLALGPVGLLYRRGYFNIATKTKALFDM 196

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
           T+  I  +   +    Y P     +               +I+  ++        +    
Sbjct: 197 TWIMIFSLTACYISLIYLPYPFTFVIM------------TLIWTSIRLPRFETFTLCFLA 244

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            + I  +  +   T + D  +   A     +L+V++    +   + A     + I     
Sbjct: 245 TLLIAMMINFNLFTLQADPKLSIQAFSFIPLLMVLIPPHAMAMVMHAFHMEKKHIIESEN 304

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R   A+  S   +         +     +  +LG     +      +    +  D     
Sbjct: 305 RFRNAMEYSAIGMALVSPEGQWMQVNKALCKLLGYRQEILLT--LTFQQITYPEDLTADL 362

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +LD     R      E R   +D +  W ++ +  + +     L YI    DI + KKS
Sbjct: 363 KLLDDLYYGRIPSYSMEKRYIRSDGEVVWALLVVSVVRDHEQQPLYYISQVEDINDLKKS 422

Query: 526 LEGILCN 532
                  
Sbjct: 423 EIVNRRL 429


>gi|325972616|ref|YP_004248807.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
 gi|324027854|gb|ADY14613.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
          Length = 642

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/422 (23%), Positives = 182/422 (43%), Gaps = 12/422 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT IPN  ++ + L  I+           T++++DI+ ++ IN+  G + GD  L   
Sbjct: 221 DLLTRIPNYTAYYEHLKHIV-----HTRHETTILMLDIENFRLINERYGNSYGDRFLQLF 275

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
             ++         + RL GNRF +IL  + +   +      +R        + +  I   
Sbjct: 276 AAKLSTFTTLG-SVYRLFGNRFALILPRQTH-NGVVRIVQGIRAITNEGFIIEDVPIVCH 333

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCL 713
            +I          T  E+  + +  M   K R    V  F       R  ++ I   L  
Sbjct: 334 INIAIVETPLKTNTLEEIADSLDFTMVKIKERRRVSVIIFNQKLIPLRQRKLDILSVLRK 393

Query: 714 AVENSELY-LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           AV +  +  + Y PII + D  I+  EAL++ +  + G IS  EF+  AE   +I  +  
Sbjct: 394 AVRDESMVKVHYQPIIDMQDHHIIAAEALMRIEDERLGMISPGEFIPAAEMAGLISPLTE 453

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++ ++   + +   Q +     I INI++ DL  +E    +  +I +T     ++    
Sbjct: 454 IIIRKVCTLLKTHEQQTSHLS-HISINISADDLNSSEFAHRILDVIEQTRVDARKLSFEV 512

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ESV++   +  +       + GI   LDDFGT  S L  L   PFD VK + S+++ +T
Sbjct: 513 TESVLLSPSDSVQKNWNAFSERGIHFLLDDFGTGYSNLETLVSKPFDFVKLDRSVVSNAT 572

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
                ++  I  M K +  +++A+ +  E  ++ +   G  ++Q  + + P+    +L  
Sbjct: 573 NNYELLV-LIAGMLKYLGKSMVAEGVETEEQLQMVKGQGIQFVQGYYFSKPVPEAQLLAW 631

Query: 953 LK 954
           L 
Sbjct: 632 LS 633


>gi|225569306|ref|ZP_03778331.1| hypothetical protein CLOHYLEM_05388 [Clostridium hylemonae DSM
           15053]
 gi|225162105|gb|EEG74724.1| hypothetical protein CLOHYLEM_05388 [Clostridium hylemonae DSM
           15053]
          Length = 637

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/421 (22%), Positives = 180/421 (42%), Gaps = 15/421 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D++TG  NR +F   L   +         +  V+++    +  IN   G   G++ L ++
Sbjct: 226 DSVTGAGNRNAFYSELAYRVA-----GKQKFQVLLVVPRDFGAINQRYGHQTGNEFLYAV 280

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              + E       + R  G  F +I    ++S     +A  + +    P  + + E T+T
Sbjct: 281 VLWLEET-YREAAVYRYIGVTFAVIFPY-SDSALADRYARELEERFEQPWVIGQYEETIT 338

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-LCLA 714
           A+ G    T       +M++  +  +  AKH G  H+   R    R  R  +  D +  A
Sbjct: 339 AAFGSMVHTGGDQEEDQMMELLDYLLSLAKHSGQKHIHFGREVKERFLRARMVADTVRRA 398

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           V+     + Y P+           EAL++    + G +S  EF+ +AE + ++  I   +
Sbjct: 399 VKEQLFEVWYQPVYSPEKGCYYSAEALVRLRDGEGGFLSPDEFIPVAEGIGVVSNIFWQV 458

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L  + R I    D    P   I +N++ +   + +L   +Q L+     +P +IK   +E
Sbjct: 459 LGEVCRFIKRNPDL---PVGTISVNMSMEQFEEPDLPRRIQRLLGAWDIAPQKIKFEITE 515

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
            V+  +  + + ++  + + G    LDDFG   S  + +    F+++K + SL+ G TEK
Sbjct: 516 RVISEDAVQVQKVIHEMEEFGFRFYLDDFGIGYSNFASVAEYHFESIKLDKSLV-GITEK 574

Query: 895 RIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 I+  +I +   +   +IA+ +      + LT MG D IQ  + A P+    ++K
Sbjct: 575 AEKGYNIVCGLISLFHEMGMEVIAEGVETAGQSETLTSMGADKIQGFYYARPMPGAELVK 634

Query: 952 L 952
            
Sbjct: 635 F 635


>gi|313681251|ref|YP_004058989.1| diguanylate cyclase/phosphodiesterase with gaf sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154111|gb|ADR32789.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 816

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 180/438 (41%), Gaps = 32/438 (7%)

Query: 518 DITEQKKSLEGILCNAFQ---DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           DI    +S        +    D+ T +PNR S ++ L+               + +I+ID
Sbjct: 397 DIGFAIRSFTQREQLKYYLTTDSNTDLPNRFSLVEVLSRE---------SMYGLAIINID 447

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGE--LLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ++  IN+V G+++GD VL      +           L +L  + + ++    N+     D
Sbjct: 448 RFGDINEVYGVSIGDAVLSQYGHWLRAKIASWKNIELFKLGSDEYALVATQCNDLKLFTD 507

Query: 633 FAIAMRKS-IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN- 690
               +  +       +   EI +T ++G A       ++ ++L++A  A+  AK    + 
Sbjct: 508 LLENLISTTQKEVFRVEGIEIVLTITVGVA------KSTEQVLEHATAALKQAKRNRHSL 561

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            + S      + + +   + +  A+E+S +   + PI+     +I+  EALI+       
Sbjct: 562 EIFSSESKQEQENNIAWYKRIKEAIEDSRIVPYFQPIVDNESGKIIKYEALIRLVDVDGS 621

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S  +F+ IA++  +   +   M+ ++ +               + +N++++DL +++L
Sbjct: 622 IVSPYQFLEIAKKTKLYPELTKMMITKVVK-------LFKDSAFPVSLNLSTQDLTNHDL 674

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + ++  I +       +     ES  + N       + R + IG    +DDFG+  S  
Sbjct: 675 ADFLEETIHENGV-GQLMIFEILESEGIENYSSVSEFVDRFKAIGCRFAIDDFGSGYSNF 733

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +L  +  DT+K +GSL+      R     ++ I   A  +   +IA+ +  E    ++ 
Sbjct: 734 DHLLKLNIDTLKIDGSLIKNLPHNRNAQIFVKHICDFAHEMGIKVIAEFVANEAIFHQVK 793

Query: 929 RMGCDYIQDSHVASPLGF 946
            +G D  Q  +   P   
Sbjct: 794 AIGIDASQGYYFYEPSPI 811


>gi|3659622|gb|AAC61689.1| diguanylate cyclase [Gluconacetobacter xylinus]
          Length = 493

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 119/471 (25%), Positives = 202/471 (42%), Gaps = 8/471 (1%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
            IV   D              I   +   + G     L     + +  FR +  +    R
Sbjct: 28  LIVAVTDRKGIITYVNDKFCEISQYSREELLGHTHRILNS-GEHGKAFFREMYQTLFSGR 86

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
                     RA D   +W+   I P  N+ G+I  ++    +ITE   +   +   A  
Sbjct: 87  T--WYGNLCNRAKDGSHYWVATTIMPHRNAKGEITGFVASRFEITELMNTKVRLKKQAAT 144

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR  F   L T L+ +         +++ D+D +K +ND+ G   GD+VL  +
Sbjct: 145 DVLTGLLNRGGFNASLVTALENAKRPHPEPQALVMFDLDGFKPVNDIHGHHAGDEVLKVI 204

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
            +R+ EL+   D ++RL G+ F IIL      + +      ++  +  PI L    + ++
Sbjct: 205 GQRLIELIGPDDAISRLGGDEFAIILRRSLKLMPLETILTKVQNLLEEPIMLDSATVRIS 264

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
            SIG    T    T   + KNA++A+Y AK  GG     F  S  ++      I  +   
Sbjct: 265 GSIGATPIT-GADTLEGLQKNADVAVYAAKQSGGKQARMFTPSLHKTTMERAKILTEARK 323

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            VE  +  + Y PI+      I   EAL++W HP  G +S+  F  +  +  + + +   
Sbjct: 324 GVELRQFEVYYQPILNARTGRIEQAEALMRWHHPDRGLLSAGAFTDVFADSALAQIMETH 383

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +++    DI  W  +  +P + + +N++  DLL+ E    + + I +    PS   L  +
Sbjct: 384 LVQSFHDDIQKW-KEGGLPSLRLAVNLSHLDLLNLEQQIDLFSEIRELNLEPSTFILEVT 442

Query: 834 ESVVM-GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           E ++     E++RL L  L   G  L +D FG     LS LG +PF ++K 
Sbjct: 443 EQILQGRRAEKNRLRLRSLSGNGFGLAMDKFGYGTVRLSTLGELPFQSLKL 493


>gi|114049136|ref|YP_739686.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-7]
 gi|113890578|gb|ABI44629.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           sp. MR-7]
          Length = 876

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/425 (24%), Positives = 198/425 (46%), Gaps = 10/425 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++     ++ +A  D LTG+PNR  F++RL   +         +  ++ ID+D++K+
Sbjct: 438 IRQRRNMEAKLVHDAKHDALTGLPNRAMFMERLNQAIKHVRRHTLEQFALLFIDLDRFKQ 497

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND +G   GD  L+    R+   ++  D LARL G+ F I+L S N      D A  + 
Sbjct: 498 INDTMGHLEGDRFLIETATRLRACIRSNDTLARLGGDEFVILLDSINGINDARDVAERVI 557

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           + I++   L   E    ASIG     +   TS  ML+NA+ AMY AK  G      F  S
Sbjct: 558 QKISLSYTLGAIEFHSGASIGITISGNKLDTSESMLRNADTAMYQAKANGKGCYVIFDDS 617

Query: 699 SFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +     I  + D   A++  EL L + PI+ L+  +   LE  + W+HP+WG I    
Sbjct: 618 ASQQKMQDIAFENDFKQALQTGELQLQFWPIVDLLTLQTQALECRLTWEHPQWGTIPQEI 677

Query: 757 FMLIAEELCMIKAINLF---MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              +AE+  ++  ++ +   +L++    +++ +       + + + ++S+ L       G
Sbjct: 678 LSQLAEQANLMVELDKYTISLLDKSYHQLLANQ----GDKVELHLMLSSQHLKHKHALRG 733

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  + +T  +  ++ L F+E  ++   E        L+K+ ++L +  +G+  S L+ L
Sbjct: 734 LKNALKQTKLALPQLWLFFNEKALVLETENHINGFELLKKLDVNLGISHYGSGHSSLNSL 793

Query: 874 GYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            ++P   +K + ++      E+ I ++ +    A  ++       +     IK    +G 
Sbjct: 794 LFLPIKGLKLDANITKQLQDEQHIKLMSAYQKAASTLDLQTFVDGLQSVEQIKIFHALGY 853

Query: 933 DYIQD 937
            + Q 
Sbjct: 854 RFGQG 858


>gi|330721209|gb|EGG99316.1| Sensory box/GGDEF family protein [gamma proteobacterium IMCC2047]
          Length = 374

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 155/364 (42%), Gaps = 5/364 (1%)

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L      +           RL G+ F IIL   N + +I D    + K       + + 
Sbjct: 1   MLTKAANILESACYQRGNAYRLGGDEFAIILGPYNQAQEIHDQVDYILKEFEQGFEIQQT 60

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIK 708
              VT SIG A +     T SE+LK+A+LA+Y +K  G      +     ++      + 
Sbjct: 61  LARVTCSIGIAFFYRHGNTLSELLKSADLALYRSKLMGKQQATYYSSKHKKTHLSEYELL 120

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+   EL++    I+ +   ++  +E L++W HP+  NIS  + + IA +  ++ 
Sbjct: 121 NDLKAALFGQELHIYGQQIVDMSTSKVHAIECLLRWHHPRNENISPIKIIDIACKHGLLT 180

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ ++ +     +  + +      I I IN+  + ++D  L +     + +    P   
Sbjct: 181 RLSHYIFDHCIEQLRPYMEAIQQAEISISINLCPQQVMDEGLIDYFHQKLLQNKIDPQLF 240

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   +      +  L  L+  G  + +DDFG+  +   YL  +  D +K + SL+
Sbjct: 241 ILEITEDTKIDYHRGIKSYLTYLKDKGFKVAIDDFGSGYASFKYLYELQADYLKVDKSLL 300

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD-YIQDSHVASPLG 945
            G    E + AI+ SI+ +A+N+  T I + I     ++ +  +  +   Q      P  
Sbjct: 301 DGIEKHESKQAIVSSILSLAENLNLTTIVEGIEKISQVQHVENLQTNTLAQGYFYHKPQL 360

Query: 946 FNSI 949
            + I
Sbjct: 361 LSEI 364


>gi|302671491|ref|YP_003831451.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395964|gb|ADL34869.1| GGDEF/EAL domain-containing protein [Butyrivibrio proteoclasticus
           B316]
          Length = 598

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 100/534 (18%), Positives = 200/534 (37%), Gaps = 28/534 (5%)

Query: 436 TILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            +LG       G I  +    +H ++    + I D FV  +       FR R  D  +H 
Sbjct: 47  EMLG---SEFEGNINGSLFEKVHPDEASKLKAISDDFVT-KHLDYDITFRARRDDG-YHM 101

Query: 495 MIIRIRPMSNSNGDILRYIG-----IANDITEQ--KKSLEGILCNAFQDNLTGIPNRQSF 547
           +       +  +G  +  I         D+  +  +        + + D LT +PN    
Sbjct: 102 LHAVGYWQTMPDGSEMAVIAYSDMQHYEDVVGKIARDYQLYQKDDFYTDALTSLPNINYL 161

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
                       T+ ++   V+  D+D  +  N+  G   GDD+L  +   I        
Sbjct: 162 NKYGRDRAKEYFTNKSVP-AVIYFDVDSMQSYNNRYGFDRGDDLLKLVANVISNEF-EHG 219

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
           ++ R + + F ++         I   A    +              + A I       + 
Sbjct: 220 LVVRGADDHFIVLCKYTGKKDIINKIAKINARIKMEAY---GTTTGIHAGIYVCKRDINT 276

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
            T+ +  K A   +    +       S     +   R +I+     A+    + + Y   
Sbjct: 277 ATALDHAKRANKLLGADLNISYRFYTSEDDRLYNYQRYIIEN-FYKAMNRGWIKVYYQCF 335

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           +RL ++   G EAL +WD P+ G I  ++F+   E+  ++  ++L+M ER+  ++   R 
Sbjct: 336 LRLENDSGAGFEALARWDDPQDGIIDPADFLPALEKYHLMHELDLYMFERVCSEVKP-RF 394

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQAL-----ISKTLYSPSRIKLSFSESVVMGNPE 842
           +A +P + + IN + +D    ++   +  L     + +     S   +  +E  +    E
Sbjct: 395 EAGLPLLPVSINFSRQDFDYVDVVSEINRLFDKYQLEQYGIDRSYFIIEITEQDMATATE 454

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR---IAIL 899
                L R+R+ G  L +DDFG+  S L+       D +KF+  L+            +L
Sbjct: 455 EFHHQLQRIRESGYKLWVDDFGSGYSSLNVFSSFDIDLIKFDMDLLMNLDRHDGANRVVL 514

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++++ +A  +    + + +  E   + L  +GC+  Q      P G ++I   L
Sbjct: 515 KAMVNVAHKLGIHTLCEGMETEEQKEFLKDIGCELAQGFLYHRPEGLDTIFDRL 568


>gi|120553428|ref|YP_957779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120323277|gb|ABM17592.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 814

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 93/586 (15%), Positives = 208/586 (35%), Gaps = 30/586 (5%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V++     + H L      Q + +           S D+V   D     +          
Sbjct: 230 VMVNHSEAMVHDLEKQQAQQILQA-------TTAASSDLVVAIDTEFRLLHFNTPWCQQF 282

Query: 439 GLASGSMHGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             A         N    +    N+R     +        R     E  +           
Sbjct: 283 QHAFDLTPKTGDNLRSLLKDFPNERRLIERLWQRAFD--REHFVAEMPLNRQGEGLPIYE 340

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
              + +    G++   + +A DI+ + +           D +TG+ NR+SF++ L   + 
Sbjct: 341 FHFQSIRGDRGEVTGAVHVARDISNRIQHTSNSDYRMRHDPVTGLMNRRSFIEHLERAMG 400

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                 +    ++ +D+D +++ N+  G    D  L  L   +G   +  D LARL+G+ 
Sbjct: 401 HRHKRQSTDG-LLFLDLDNFEQFNEDAGSGTCDRYLRELAAMLGLRERQRDALARLAGDT 459

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASWTSS-KITSSEML 674
           F + + +     +    A  +R+ IA          +  T S G     S     +  +L
Sbjct: 460 FALFIENCPEP-RARKIAEEIREQIAQFQFEWQGHTLQTTTSGGLLILDSELPERADTLL 518

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRS----DRVMIKEDLCLAVENSELYLVYH---PI 727
             A    + AK  G N + +       +        +++ L  A++   L L +    P+
Sbjct: 519 TQAADLCHTAKTSGRNRIHTAHALPDAAGDTGTDKQMEQ-LRQALDQHRLILEFQALKPV 577

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
             +   + + +   I    P    +   +F+ +AE   + K ++  ++ +    +   R 
Sbjct: 578 ASVTWGDHIEILCRIPGQEPDDTTLLPGQFLPLAERFDLAKRLDRQVIRQTLDWLGQHRL 637

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                  +   N++   +LD+   + M+ L++ + +      L   E+     P+   +L
Sbjct: 638 LEPRLK-YCGFNLSLASVLDDTFADFMEQLLAPSPFRAECFCLEIREAHATQYPDEVAVL 696

Query: 848 LGRLRKIGISLTLDDFGTKCS--LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSII 903
              L +IG  + L+  G   S    S   ++P D +K +  +M    +   +  ++ ++ 
Sbjct: 697 CDALHRIGCRVALE--GAGASVESYSLAAHLPVDIIKLDRRVMDHLEDDPVQQVMVDALH 754

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +A+      +A  I  +  ++++  +G  + Q   ++ P     +
Sbjct: 755 RIAEAAGKETVATFIESDETLRKVRTLGIHFGQGYRLSKPSPLEQL 800



 Score = 43.8 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 5/151 (3%)

Query: 372 VGGLVLIVILIGFTVI-QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
                L+ + +      Q   A+         D   Q LA   +G  +W+ D+  + ++ 
Sbjct: 90  FFFTALLGLRMEIRDSDQAATASITLRDSDAMDSRIQRLAEQSAGFGLWELDMPSNEISW 149

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
           +  +  +L L +GS   P +          ++  R +    +   +     +  +  +  
Sbjct: 150 SEGMYRLLELKAGSELTPEQALFYC--QTGQNRVRAMFRRCMRTGQ-PFSMDLTILTSRQ 206

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +   + +  R + N  G + +  G+  + +E
Sbjct: 207 RPQRVTLAGRALKNG-GRVQKLGGVMVNHSE 236


>gi|158425526|ref|YP_001526818.1| putative cylclic diguanylate phosphodiesterase [Azorhizobium
           caulinodans ORS 571]
 gi|158332415|dbj|BAF89900.1| putative cylclic diguanylate phosphodiesterase [Azorhizobium
           caulinodans ORS 571]
          Length = 448

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 122/258 (47%), Gaps = 3/258 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +    +    ++ ++  A+   +  L Y P +      I+G EAL++W +P  G I  ++
Sbjct: 182 MQVDMASYHQLEGEMRRALARGDFRLHYQPQVDP-SRRILGAEALLRWFNPDHGIIPPAK 240

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  +  ++L      +  W +      + I +N+++      +    ++ 
Sbjct: 241 FITLAEETGLIVPLGDWVLRTACAQLALWAEIPATRDLTISVNVSASQFRQPDFVPRVRE 300

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +++ T   PSR+KL  +ES+ + +P+ +   +  LR +G+  +LDDFGT  S L  L  +
Sbjct: 301 ILAHTGADPSRLKLELTESLFVRDPDVAAEKMSALRDVGLRWSLDDFGTGYSSLHMLRNL 360

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + + ++     E+  AI+R +I M   +   ++A+ +  E   + L   GCD 
Sbjct: 361 PVDEIKIDKTFVSRMASEEQDRAIVRLLIDMCSTLGLFLVAEGVETEEQYRLLQAWGCDG 420

Query: 935 IQDSHVASPLGFNSILKL 952
            Q       +      +L
Sbjct: 421 FQGYLFGKAMPVFQFSRL 438


>gi|188535496|ref|YP_001909293.1| putative phosphodiesterase [Erwinia tasmaniensis Et1/99]
 gi|188030538|emb|CAO98433.1| Putative membrane protein YhjK [Erwinia tasmaniensis Et1/99]
          Length = 664

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 96/436 (22%), Positives = 197/436 (45%), Gaps = 12/436 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   +    L+ +PN+  FL  L   L    +      TVMV+ I+   + N ++  
Sbjct: 234 YDEMSRQSTYFALSDLPNKTLFLALLEQHLSAVGSAS--VFTVMVVRIETLLEANGLVTD 291

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              + +L++L  +I   +    +L +LS   F +++   NN  +    A  + +++  P+
Sbjct: 292 EQRNALLLTLVGKIRACIDEHTVLGQLSIGDFALLIKPANNPFRALRLARNLMQALNQPV 351

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L   ++    SIG A    + I++ ++L  +  AM  A+H G N +  F V      + 
Sbjct: 352 LLQHMQLRPNVSIGIAQ-REAGISADDLLARSVSAMMSARHEGKNQILFFDVGLTERAQK 410

Query: 706 MI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +  + D+   +   +  L   P + +   ++VG EAL++   P        + +  AEE
Sbjct: 411 RLTQEHDILQGLAEEQFALWLQPQVDMRSGQLVGAEALLRMRQPDGTWSLPGDLIANAEE 470

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           + +I A+  ++ E   R +  W+ +     + + +N+++  L +  +   +QALI +   
Sbjct: 471 IGVIAALGHWVFEESCRILAIWKQRG--SDLTLSVNLSAIQLREAAMVTHLQALIQRYDI 528

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL---GYIPFDT 880
            P R+ +  +E+  +G PE++ LLL  L+K G+++ LDDFG   + L++L     +P D 
Sbjct: 529 CPGRLVVEITETAQIGEPEQALLLLQGLQKTGVAVALDDFGMGYANLNWLNQFKTLPIDK 588

Query: 881 VKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           +K + S +         ++  +  +A  ++  +IA+ +  E   ++L   G  Y Q    
Sbjct: 589 LKMDRSFVAAL-PLDATMVHIVAAIAGIVKLDVIAEGVETEEQREQLLACGIHYAQGYLY 647

Query: 941 ASPLGFNSI-LKLLKE 955
           A  L       + L  
Sbjct: 648 AEALPLPQFNRRYLSN 663


>gi|16330979|ref|NP_441707.1| hypothetical protein slr1692 [Synechocystis sp. PCC 6803]
 gi|1653473|dbj|BAA18387.1| slr1692 [Synechocystis sp. PCC 6803]
          Length = 332

 Score =  301 bits (770), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 3/252 (1%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +  ++   +E  + +L Y P I +    ++G+E LI+W HP+ G IS +EF+ IAE+ 
Sbjct: 69  QNLAWEMAHCLEQKKFHLHYQPQIDIKTGALLGVETLIRWHHPRLGFISPAEFIPIAEQT 128

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L++       W  Q  +PP  + +N++ + L +  L   +++++++T  S
Sbjct: 129 GLIVPMGYWVLQQSCLQYQRWLSQ-GIPPFKLSVNLSLRQLQEANLVSEIESIVAQTQIS 187

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             +I L  +ES+++  P  +   L +L ++GI + +DDFG   S LSYL  +P  T+K +
Sbjct: 188 YQQITLEVTESLMLYEPGETINRLNQLNEMGIQIAIDDFGVGYSSLSYLKDLPLQTLKID 247

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +      EK   IL+SII +   ++  I+A+ +     +  L  M CDY Q    + 
Sbjct: 248 KSFLDDLLTREKNQVILQSIIELGHRLDLKIVAEGVESVEQLAMLKSMDCDYGQGYLFSR 307

Query: 943 PLGFNSILKLLK 954
           PL         +
Sbjct: 308 PLTDQDTTAFFR 319


>gi|238799308|ref|ZP_04642751.1| hypothetical protein ymoll0001_40130 [Yersinia mollaretii ATCC 43969]
 gi|238716850|gb|EEQ08723.1| hypothetical protein ymoll0001_40130 [Yersinia mollaretii ATCC 43969]
          Length = 1116

 Score =  301 bits (770), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 106/581 (18%), Positives = 226/581 (38%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 533  ILRVIGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCTDQEMKITFMNPVAEKMTG 592

Query: 440  LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
             A+    G    + +   H  D       ++  + +R    L     +   D Q++ +  
Sbjct: 593  WANTIALGQPVNHIIKLTHGVDGPEIENPIEHCLNHRPYSSLNESIVLHHRDGQYYDIQE 652

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    G ++  + +  D+ E +  +  +  +A  DNLT +PNR +F ++L   + +
Sbjct: 653  SVAPLKTLEGGVVGAVMVFQDVGESRAMMRKLSHSALHDNLTSLPNRANFENKLKAAIQV 712

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S   +     +  +D+D +K +ND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 713  SVELNQQH-ALAFLDLDYFKAVNDTAGHPAGDALLKELSQLMRQHLRNSDCVARLGGDEF 771

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 772  GLLMLNCTLPHAKAITQSLVSMINGYHFYWEDKLYRIGASAGVTQISSSNNQRSEIMAQA 831

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE 733
            ++A Y AKH G   V  ++    +      +    ED+   +  S+L L   P       
Sbjct: 832  DIACYTAKHSGRGQVFLYQPRQKQLLARQHELLSKEDVENILSESQLTLQLTPTAPPKTP 891

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +       P+  N+S + F   A    ++  ++ ++ E+    +++  +  N  
Sbjct: 892  LSVCFYQVSFVVTRPQNMNVSQAAFQEAALLYGLLPQMDGWVCEQ---LLVAHAEAINRK 948

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  +  + + +L+ +T   P  +     ES ++  P      L +L+
Sbjct: 949  GLALAIPLSEIALLKEDFRQSLLSLVQQTPLPPQSLYWMVDESTLLQYPFAIGNFLAKLQ 1008

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            + G  L + +FG   +    L     + +KFN  L+           ++  I   A+   
Sbjct: 1009 EQGCQLIVKEFGHNLNDFELLAEHTINYLKFNSDLIAHIHINQMDEVLVSIINGTAQRAN 1068

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +A        + +L  +G D      +      + +L 
Sbjct: 1069 IATLAGPAELPPTLSKLIAIGVDLADGETIGRTQPLSEVLH 1109



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 102/329 (31%), Gaps = 33/329 (10%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
                Y+S   G  ++++ +      +  A   +AL    +++   Y +       +  +
Sbjct: 141 LAAAWYLSPQNGSFTQVLTVWF----MSEAIGMLALGPVGLLYRRGYFNIATKSKALFDM 196

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
               I  +A  +    Y P     +               +I+  ++        +    
Sbjct: 197 MGMMILSLAACYIGLIYLPFPFTFVIM------------ALIWTAIRLPRFETFTVCFLA 244

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            + I  +  +   T + D  +   A     +L+V++    +   + +     + I     
Sbjct: 245 TLLIAMMINFNLFTLQGDTTLSVQAFSFIPLLMVLIPPHAMAMVMHSFRMEKEHIIESEN 304

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R   A+  S   +         +     +  +L  +  ++      +    H  D     
Sbjct: 305 RFRNAMEYSAIGMALVSPEGKWMQVNQALCKLLDYSQETLLT--LTFQQITHPEDLSADL 362

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +LD     R      E R   +D +  W ++ +  + +     L YI    DI + KK 
Sbjct: 363 KLLDDLYHDRIPSYSMEKRYIRSDGEVVWALLVVSVVRDHQQQPLYYISQVEDINDLKK- 421

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                        T I NR+  ++R+T  
Sbjct: 422 -------------TEIINRR-LMERITLA 436



 Score = 94.6 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ D+ +  ++    +  +  +   +       W  YIH  D + 
Sbjct: 430 MERITLANEAGGIGIWELDLRKQLISWDKRMYELFHVPLHTPVDDN-VWRQYIHPEDLNR 488

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 + +  R+   + EFR+   + +   +  +   + + +G+ILR IG   D+TE +
Sbjct: 489 VNREYSAALNQRQ-PYRLEFRLLLPNGEIVHLRNQANMVCDKSGNILRVIGTTLDMTEIR 547

Query: 524 KSLE 527
              E
Sbjct: 548 NLTE 551


>gi|108804912|ref|YP_644849.1| diguanylate phosphodiesterase [Rubrobacter xylanophilus DSM 9941]
 gi|108766155|gb|ABG05037.1| diguanylate phosphodiesterase [Rubrobacter xylanophilus DSM 9941]
          Length = 259

 Score =  301 bits (770), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 3/256 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           + +DL  A+E  E+ ++Y P + L      G EAL++W+HP+ G I    F+ +AEE   
Sbjct: 1   MPDDLRRAIERGEMSVLYQPQLFLETGRAAGAEALVRWEHPERGPIPPERFIPLAEESGE 60

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++LER       W+ +     + + +N++   L        +  ++  T  +P 
Sbjct: 61  ILDLGRWVLERACEQAALWQRELPGSGLKVGVNVSVLQLEHPGFPGALAGVLRSTGAAPE 120

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I L  +ES ++ +  R    L R+R+ G+ L +DDFGT  S LSYL   P D +K + S
Sbjct: 121 GIVLEITESSLLEHESRVAEALWRIRRSGVMLAVDDFGTGYSSLSYLDRFPVDYIKVDRS 180

Query: 887 LMTGSTEKRI---AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           L+           ++L +++  A +++  ++A+ +     ++ L  + CD  Q    + P
Sbjct: 181 LVRRIETNGERTVSLLEALVVFAHSLKMRVVAEGVETPGQLETLRGIRCDIGQGVLFSGP 240

Query: 944 LGFNSILKLLKERFPL 959
           L        L E  P 
Sbjct: 241 LPAAGAGAFLAEHLPG 256


>gi|330880693|gb|EGH14842.1| GGDEF domain-containing protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 265

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 121/249 (48%), Gaps = 3/249 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +DL  A+++ +  + Y P    +    +G EAL++W+HP+ G +   +F+ +AE+  +I 
Sbjct: 1   QDLRKAIKHRQFCIYYQPKFDALTGLPLGAEALLRWNHPEQGVMGPDQFIAMAEKTGLII 60

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L+   R +  W  Q       I +N+++       L   +   +++     + +
Sbjct: 61  QIGEWVLDEACRQMREWYTQ-GYAHWRIAVNLSALQFCHAGLVTAVADTLARHQLPANCL 119

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +K +   +
Sbjct: 120 TLEITETTAMHDADASLAVLQRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEIKIDRGFV 179

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                     AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   +  PL  
Sbjct: 180 RDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQKRFLTHLGCHSLQGFLLGYPLPA 239

Query: 947 NSILKLLKE 955
              L  ++ 
Sbjct: 240 EQFLDEIRA 248


>gi|308185517|ref|YP_003929649.1| signal transduction protein [Pantoea vagans C9-1]
 gi|308055796|gb|ADO07966.1| Predicted signal transduction protein [Pantoea vagans C9-1]
          Length = 593

 Score =  300 bits (769), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 189/424 (44%), Gaps = 11/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+PNRQ  +  L  +     T       +  ID+ +  ++   +G+   + +L  +
Sbjct: 167 DPVTGLPNRQRLIRDLQFLAASGDTTPRRLVLIDCIDMPRAYELARSMGMGPVESLLKDV 226

Query: 596 TRRI--GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              +         ++L  ++  RF  +L  + + L  +  A  +    A         + 
Sbjct: 227 ATLLPLRLRPAPGEMLYTVATGRFA-LLTRQESRLTASWVANKLAGISAD--LGDGLSVA 283

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           +    G AS+ + ++ + E+L+ A  A++ A      +   S    +  +    +  DL 
Sbjct: 284 LMTHTGEASFNTGEMPAQEILRRAVSALHEAITRNVASMPFSEATDTRHTQDFTLMHDLA 343

Query: 713 LAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            A+     L+L + P I L   + +GLEALI+W HP+ G +S ++F+ +A +  ++  + 
Sbjct: 344 TAIRQDKGLWLAWQPKICLHSGKPIGLEALIRWQHPQRGELSPAQFLPVAGQTQLLTELT 403

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E     +   RD     PI   IN++S D   +   + ++  + +     S + + 
Sbjct: 404 AWVTEHAIARLSRLRDSYIQLPIT--INVSSSDFSRDGFADELEEKMLRAKLPVSLLGIE 461

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E+  +     +   L  L+  G  ++LDDFGT  S +SYL  +P D +K + SL++  
Sbjct: 462 CLETERILESPTAMQGLEMLKLRGFGISLDDFGTGYSNISYLRRMPLDVIKLDRSLISEI 521

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +       I RSII M K+++  ++A+ +     +  LT  GCD  Q    + PL   ++
Sbjct: 522 SSDTASRVIARSIIAMLKDLDYMVLAEGVENAETVTALTEFGCDQAQGFFYSRPLPEAAL 581

Query: 950 LKLL 953
            + L
Sbjct: 582 DEWL 585


>gi|209809125|ref|YP_002264663.1| putative membrane associated signaling protein [Aliivibrio
           salmonicida LFI1238]
 gi|208010687|emb|CAQ81074.1| putative membrane associated signaling protein [Aliivibrio
           salmonicida LFI1238]
          Length = 531

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 111/393 (28%), Positives = 192/393 (48%), Gaps = 6/393 (1%)

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +  ++  I +  Y+K+ DV    V   VL      I   LK   I      N   +I+ 
Sbjct: 128 KIPFSITKIKVVNYRKLIDVSSYKVFKKVLSYSVLMIKRELKNKHIDLYYEDNE-IVIIS 186

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              + + I   A  + K +  PI + +R   +   IG A +T    +S EMLK  ++A Y
Sbjct: 187 YSTDKILIEKVANKIHKQLISPILMGDRNFLLQPVIGCAVYTDEIKSSEEMLKRVDIACY 246

Query: 683 HAKHRGG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AK  G      S++ +   ++ + I + L  AV NSE  L Y PI+  +D+ I G EAL
Sbjct: 247 KAKKLGLVFDFYSYQYAKSINEELRILDKLVYAVPNSEFELYYQPIVNSIDKTIHGYEAL 306

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W       I   +F+L+AE    IK I  +++ ++ARDI  ++ +       + INI+
Sbjct: 307 IRWPQKDGTMIPPDQFILVAENNNFIKGITEWVVRQVARDIQRFKMENIHHQ--VHINIS 364

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + DL DN+L   +  L+   +  PS + L  +ES +M + + + L+L +  ++G  +++D
Sbjct: 365 TLDLHDNDLYIQLSDLLINRIIEPSDVVLEVTESALMSDIDAAYLMLSKFSELGFYISID 424

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LS L  + F+ +K + S +   +      AI+ S I +A ++   ++A+ + 
Sbjct: 425 DFGTGFSSLSLLRILTFNQIKIDQSFIRNMSIGNSDYAIVASTIYLAHSLGCNVVAEGVE 484

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +    EL  +GCDYIQ   +  P    +++  
Sbjct: 485 DQSLFNELRELGCDYIQGYFIHKPQDLTTMIHW 517


>gi|307608819|emb|CBW98211.1| hypothetical protein LPW_00711 [Legionella pneumophila 130b]
          Length = 537

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 206/444 (46%), Gaps = 23/444 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   +  D+LT +PN +   +++   ++   +       V+VI I+    +N   
Sbjct: 105 NLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGSQG--ELAVIVIKIND---LNYNF 159

Query: 584 GIAVGDDVLVSLTRRIGELLKFP---------DILARLSGNRFGIILISENNSLKIADFA 634
                ++++     ++  +L  P         +++ARL  + F I++      L I +  
Sbjct: 160 SSFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELL 219

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VE 693
           I +   +   + +    I VT+++G A +         ++ +A +A+Y A+    ++ + 
Sbjct: 220 IHLLTLLNNNLMVDGISINVTSTVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIY 279

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           S  +        M+  +L  ++EN +L + Y PI+ L + +IVG E+  +++HP+ G +S
Sbjct: 280 SPEMEEDLIQNRMVMNELQRSIENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLS 339

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           + +FM + E   +I  +   ML+++ + + +W D  +   IF+ +N++       EL E 
Sbjct: 340 AEKFMPLIEGTNLIHNLTTLMLKQVIKQLAAWHDAGH--KIFVSVNLSVHH----ELPEL 393

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++    +P  +KL F+E   +     ++ +  RL  +GI L +DDF ++ S    L
Sbjct: 394 IEKLLNDYEIAPQFLKLEFTERACLTEQMVTKEVFDRLSAMGIKLCIDDFCSESSSFIQL 453

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P + +K   S +       K+  I+ +I+ +A+ +    +A  I  +  +++L  +G
Sbjct: 454 TNFPIENIKIEKSFVLKIAKDPKKAKIVEAIVKLAQTLGWEPLADGIADQNALEKLRDLG 513

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C Y Q  + +  +       LLK+
Sbjct: 514 CLYGQGLYFSRAVNVAEFTSLLKK 537


>gi|119946923|ref|YP_944603.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119865527|gb|ABM05004.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 889

 Score =  300 bits (768), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 96/548 (17%), Positives = 214/548 (39%), Gaps = 21/548 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    +   +    S + +   D     ++       + G +   +   +  
Sbjct: 335 RNLTEQLRMQKRLQITDVVFEHSREALIVTDGDGHIISANDHACFLFGYSKDQL---LAE 391

Query: 452 WLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +  +  ++  D +   ++  +       Q +   R  +   ++  + +  + +   + +
Sbjct: 392 EINLLASDNYNDEYYKNIEQILETES-FWQGDITYRTKNGSVYYAWLEVYAVEHVEENSV 450

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
             +    D+T  + + + I   + QD LTG+ NR S   RL  I+  +    +    VM+
Sbjct: 451 DRVYSYTDLTHFQVTDKKISFLSKQDPLTGLRNRISLFSRLEDIITCANYLHSA-VAVML 509

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           IDID +K IND  G   GD VL  +  R+   +   D L R   ++F II+    N    
Sbjct: 510 IDIDDFKAINDNYGHNAGDKVLKEVAERLTSCVSGKDTLGRYGNDQFIIIIDELVNEFDA 569

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRG 688
           A  A  + +  +    +      ++ASIG +      + +S +  NAE AM   K     
Sbjct: 570 AMVANKIAEQFSRAFLIENSYTNLSASIGISLSPDDGMEASTLFLNAEDAMQRGKSDRSA 629

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +  +  ++   +    ++++L  A+ + +  + Y P     + +IV LE L+ W HPK
Sbjct: 630 AFNFYTASLTVGLNKEFALEQELQQALLSEQFVMYYQPQYDFNNRQIVALEGLLHWHHPK 689

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G ++   F+ +AE   ++  I   ++ + A   + W          I +N+ +  L   
Sbjct: 690 RGILTLERFLSVAEGSHLLVPIGWEIIHKAALQAVIWEKSEIKFG-RIAVNLFTIQLSQI 748

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
                +Q ++ +T  S  +++    ++V+          L  L K+GI+LT+ + G   +
Sbjct: 749 SFIAELQTILKETGCSTGQLEFLVDKTVLQHASTDILSNLDNLNKMGITLTITNLGIDAN 808

Query: 869 LLSYLGYIPFDTVKF-NGSLMTGSTEKRIAILRSIIPM------AKNIETTIIAKDIYGE 921
           ++  +  +    +K  +    +        IL S + +      A+++   +++  +   
Sbjct: 809 VIDLIHRLGVQNLKISD----SQINSGSG-ILASELQLQCFKFFARSLSLNVVSDGLDNA 863

Query: 922 IDIKELTR 929
                +  
Sbjct: 864 EQASFVQE 871



 Score = 45.3 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 403 DGER--QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIN 459
           + ER         S DI++  D+    ++         G     + G  +  +L      
Sbjct: 222 EKERVMLRTTADTSRDIIFFRDLEGLLLSCNKQYEKFTGGLEKDLVGKTVFAFL----PL 277

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D        D ++        ++    A +N+ ++  I+  P+ + +G++     +  ++
Sbjct: 278 DEAILAAQRDKYIIKNNKPYTWKGFFTAHNNECYFFEIKKSPIQDKDGNVQGVATVGRNL 337

Query: 520 TEQKKSLEGIL 530
           TEQ +  + + 
Sbjct: 338 TEQLRMQKRLQ 348


>gi|302386741|ref|YP_003822563.1| diguanylate cyclase/phosphodiesterase [Clostridium saccharolyticum
           WM1]
 gi|302197369|gb|ADL04940.1| diguanylate cyclase/phosphodiesterase [Clostridium saccharolyticum
           WM1]
          Length = 991

 Score =  300 bits (768), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 112/631 (17%), Positives = 234/631 (37%), Gaps = 41/631 (6%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL-DNDIIQPALVGGLVLIVILIGFTVI 387
                  R +L     + +    +G ++           +   L G      + +    I
Sbjct: 366 LSFYNAIRRMLFSSMLVPLVFSLLGAFVIGKIMTEPIRRLVMELRGKSGTRGLSLKRVRI 425

Query: 388 QHVLATGYFSQGIFSDGER----QSLAVLGSG--DIVWDWDIVRDRVTTTPDIATILGLA 441
           + +       + +  D ER     S  +  +     V++++   DRV  +  +  +LG  
Sbjct: 426 REIDELSETIEQLNWDVERASSKISSILEHANVLIGVFEFEEEADRVFCSRSLFEMLGW- 484

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
            G M  P             + F+  ++      + +     +         W+   +  
Sbjct: 485 -GCMEEPYCYIKT-------EKFKKYMEKTFTGIKIKGDRILQCLEGPEGTRWVEFIL-- 534

Query: 502 MSNSNGDILR-YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
               +G      +G+ +D+T   +  E +      D LT + NR++F +++   +     
Sbjct: 535 ----DGSKKGTILGVCSDVTADVEEKEKLERERNYDLLTELYNRRAFREQVEAAV---KK 587

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  +++ D+D  K IND  G   GD  +V     +    +   I+AR SG+ F   
Sbjct: 588 QKKKLSALIMWDLDNLKYINDTYGHDEGDRYIVLFADCLKLFSERGGIIARYSGDEFVTY 647

Query: 621 LISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           L +++      +    M+      +N     +  +  S G + +    +    +   A+ 
Sbjct: 648 LEADDKEEIRKNVRDFMKHIQKFALNTEGGYQFPIRVSGGLSWYPDDALEFETLFNYADF 707

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           AMY  KH     V+ F ++ +  +  M+   E+L   ++  E+   + PI+   +  I G
Sbjct: 708 AMYMVKHSVKGIVKEFDLNEYTHNSYMLAGSEELNRMLDRKEVRFAFQPIV-TREGTIYG 766

Query: 738 LEALIQWDHPKWGNISSSEFMLIAE-ELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            E L++ D      IS    +  A+ +L  ++A+  F   +    +         P + +
Sbjct: 767 YELLMRPDFANMKGISEVLNLARAQAKLSQMEALTWFAGLKAV--MAEIEAGQLGPDVKL 824

Query: 797 LIN-IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            IN IAS  L +NE  E ++           RI +  +E     +       +   R+  
Sbjct: 825 FINSIASVCLTENEQAELLELYGELL----HRIVIEMTEGEPASH-NFMEQKIDIARQWK 879

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
             + +DDFGT  +  + L  +  D +K + +L+    E   R  IL +++  A+     +
Sbjct: 880 GQVAVDDFGTGYNSEAILLRMKPDIIKVDINLVKRVNEDRNRQIILNNLLDFAEKNSIIV 939

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           +A+ +    +++ L   G    Q  ++A P 
Sbjct: 940 LAEGVETPEELEFLMNCGVSLFQGYYIARPQ 970


>gi|260220454|emb|CBA28007.1| hypothetical protein Csp_A05130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 558

 Score =  300 bits (768), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/441 (22%), Positives = 190/441 (43%), Gaps = 8/441 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E K+  E +  NA  D  +G+ N Q     L   L L A ++     V  +   +  ++ 
Sbjct: 118 EVKRHWEALQHNALHDVPSGLLNSQGLTAELEESLKLQAGNEGYLL-VAHVRFFRVPELV 176

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            ++G    D+ L  L   + + L     L R+  +  GI+L S            A+   
Sbjct: 177 SIVGSVKVDESLRQLASLLEKHLAGLVALGRVGQDTLGIVLQSRTVGADAVRPLQAI-AH 235

Query: 641 IAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +    +L E  + V  + G A+       ++ E+++NA  A+  A      +        
Sbjct: 236 LRDAADLGEFAVHVEMAFGVAAQRLDADASADELMRNAGQALLFAVDNRLEYQFFDSALR 295

Query: 700 FRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   + E L  AV  + L L Y P + L    +VG EAL +W+ P+ G I   +F+
Sbjct: 296 SHFVDRNHLYEKLREAVLQNRLMLHYQPQLDLKTGRVVGAEALARWNDPQDGMIPPDKFI 355

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I E   +++  +++ + R   D  +W+    +P + + IN+++  L + E+ + +Q  +
Sbjct: 356 PIIESTGLLRRFSVWTVARALADCTAWQ--TRLPGVSVSINLSADALHEPEVLQTVQRHL 413

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           + +   P  + +  +ESV++ +PE +   +     +G+ L++DD+G   S L+YL  +P 
Sbjct: 414 ANSGLEPHLVIIELTESVLLKSPEDALARMASFMALGVQLSIDDYGAGFSSLTYLKQLPA 473

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K + S +       K  AI+ S I +  ++   ++A+ I  E+    L   GCD  Q
Sbjct: 474 QEMKIDKSFIDNLAVGSKEQAIVFSSIELGHDLGLKVLAEGIEDEMTATLLREAGCDLGQ 533

Query: 937 DSHVASPLGFNSILKLLKERF 957
               +  L  +       ER 
Sbjct: 534 GWLFSKALPLSQFQTWSLERN 554


>gi|45658943|ref|YP_003029.1| putative diguanylate phosphodiesterase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45602188|gb|AAS71666.1| putative diguanylate phosphodiesterase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 555

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 174/421 (41%), Gaps = 6/421 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PN++ FL+     +    T      +  +I I     I      +  + + V +  R
Sbjct: 133 TNLPNQKYFLNHFGNQISEETTFLEEHFS-FLISISNPDAIISQERNSYFESIYVKVADR 191

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L   D L R+  ++F I  +  ++  K   FA  +R     P    ERE  +  +I
Sbjct: 192 LKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTYEEREFHLNVNI 251

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716
           G+  +     +    L   + A++ +   G N +  +  +      ++  I+ DL   + 
Sbjct: 252 GYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKAKIEIDLRKVLN 311

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            +EL + + PII L +     +E L++W+HP+ G +    F+ IAE    IK I  +M+ 
Sbjct: 312 RNELEIHFQPIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSSFIKTIGEWMIW 371

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              +   +         I + +NI+ K L D  +   ++         P+ I L   E  
Sbjct: 372 ETFQYYEN--SILRSENISLSLNISPKQLGDKNIFPLLKEASDYYKIEPNNIILEIVEDS 429

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKR 895
                 +   ++  L+  G    +DDFG   S L  L ++P D +K +   +        
Sbjct: 430 FDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMFLFNYFQTST 489

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A++ S++ + + +  +II + +  E     L  + CD+ Q  + + P+      KL++ 
Sbjct: 490 RAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCDFGQGYYYSHPMEIELAEKLIQN 549

Query: 956 R 956
           +
Sbjct: 550 K 550


>gi|152991380|ref|YP_001357102.1| hypothetical protein NIS_1639 [Nitratiruptor sp. SB155-2]
 gi|151423241|dbj|BAF70745.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 683

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 185/431 (42%), Gaps = 35/431 (8%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   A  D LTG+ NR SF                  P +++I+ID++K  ND+ 
Sbjct: 276 KENRELDRLARIDTLTGLYNRNSFF---------IEKRKYKNPALILINIDRFKHFNDIY 326

Query: 584 GIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           G  +GD +L S+   I   +       + R+ G+ F I+L  E + + +   A  + +  
Sbjct: 327 GTEIGDCILQSVANTIKNYVKNISSAKVFRVGGDDFAIVL--ERDGIDLEKIACKINRLF 384

Query: 642 -AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              PI     EI VTASIG ++          +L+ A++A+   K         +  S  
Sbjct: 385 QRKPIICRNLEIFVTASIGISTSRP-------LLETADIALKEVKKNPQKTCLYYTPSHN 437

Query: 701 ----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                +  + +   L   V+N ++   Y  I+ + +++IV  EAL +    K    S   
Sbjct: 438 LLEKVNKNLQMTNVLIDGVKNGKILPFYQAIVDIRNDQIVKYEALARIKTEKGTE-SIYP 496

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           ++ +A+E+ + K+I   +  R    +       N       +NI+  D++D +    ++ 
Sbjct: 497 YLKLAKEIKLYKSITKMIFLRSFATM-------NDKDASFSLNISIDDIIDPDFTNMLEE 549

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L        +R+     ES  + + E  +  + +++  G  + +DDFG+  S   +L  +
Sbjct: 550 LFQMYPNIKNRVTFEILESASISDYEIVKEFIKKVKSFGAKIAIDDFGSGYSNFEHLLNL 609

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +GSL+    + + A  I+  I+  A+  +   +A+ ++ +   + +  +G DY
Sbjct: 610 QIDYIKIDGSLIKNIHKDKNAKLIVWMIVNFAQAADIKTVAEFVHSKEVYEVIKELGVDY 669

Query: 935 IQDSHVASPLG 945
            Q  ++  P  
Sbjct: 670 AQGFYLHEPSP 680


>gi|167950173|ref|ZP_02537247.1| hypothetical protein Epers_28446 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 466

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 176/385 (45%), Gaps = 20/385 (5%)

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSN-----------SNGDILRYIGIANDIT----E 521
            R +  +    A   +   I     +              +     ++    DI     E
Sbjct: 30  ERHETRYPNMTAHGHYCMPIHSGERLLGVFTLYIAEGHVRDQQEQLFLTSVADILGNLIE 89

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +  + + +   AF D LTG+PNR  FLDRL   L        +   VM +D+D+++ IND
Sbjct: 90  RHLARQSLEHQAFYDELTGLPNRSLFLDRLRHHLGGGRGQGEVLSAVMFLDLDRFETIND 149

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L    RRI   ++  D +ARL G+ F ++L    N   +   A  + +++
Sbjct: 150 ALGHDHGDRLLSEAARRIAGCVRPQDTVARLGGDEFTVLLEEVANPATVTHIAERIHRAL 209

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSS 699
               NL  R +T + SIG A   + +++   +L++A+ AMY AK    G   +    + S
Sbjct: 210 EESFNLDGRRVTTSTSIGIAFTDTLELSPDGLLRDADTAMYQAKAEGTGRTVIFDVGMHS 269

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + +++DL  AV   ++   Y PI+ L D  I G E L +W HP+ G IS  EF+ 
Sbjct: 270 AAQQVLTLEQDLRAAVVEGQIEAWYQPIVDLTDGTIHGFEVLARWRHPERGIISLGEFIP 329

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANM---PPIFILINIASKDLLDNELCEGMQA 816
            AEE  +++ I+  MLE+    ++ WR +        + + +N++ K     +  + + +
Sbjct: 330 AAEEAGIVRDIDRHMLEQACAALVDWRSRFATDTMDSLHLAVNLSCKHFAQGDFMDCLLS 389

Query: 817 LISKTLYSPSRIKLSFSESVVMGNP 841
                   P +I+L  +ES+++ +P
Sbjct: 390 TTKAAGVRPEQIRLEITESLLLRDP 414


>gi|291549094|emb|CBL25356.1| diguanylate cyclase (GGDEF) domain [Ruminococcus torques L2-14]
          Length = 539

 Score =  299 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/440 (21%), Positives = 188/440 (42%), Gaps = 25/440 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT   K  +     ++ DNLTG+ NR SF+  L  +      ++      + +DI+  K 
Sbjct: 122 IT-LHKLQKQQEYLSYHDNLTGVLNRNSFVAYLDHV----EPEELKTLGALSVDINGLKN 176

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            N   G   GD+V+  +   + E     + + R++G+ + +++ + +          A  
Sbjct: 177 FNKEFGRDYGDEVVTRVGEVLSEYFHNGN-VYRMTGDEYLVLVENASYEDFTQQVHGAYT 235

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K            I++       +W    I  + ++ +AE  M   K +       ++  
Sbjct: 236 KL---------ENISLGLVSVGYAWGKVDIDVNGLVISAENMMREEKKK------YYKNL 280

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  +IK+DL   +E     +   P I +   EI G EA++++ H   G +    ++
Sbjct: 281 RKGHHEPIIKKDLLEDIEQKNFIVCLVPKIDVQTGEIAGAEAIVRYHHKDLGIMDPGRYI 340

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + EE  +   ++L++ E++ + +  W  +     + I +N A + L    + + M ALI
Sbjct: 341 NLLEETRLSHYLDLYIFEQVCQILHKWETEGIQM-VPISVNFAGETLRQENIADQMSALI 399

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K       +++  SES    N E       ++RK  + + LD FG K S  S L  + F
Sbjct: 400 EKYQVLCEYLEVEVSESYTDTNQEMLAASCSKIRKANVRVVLDHFGAKNSSFSILSIMDF 459

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + SL+T      +   + +++I +   +  +++A+ +  +  +  L  +GCDY Q
Sbjct: 460 DGLKLDESLITNLVGNRRSRVVAKAVIDICHQLGCSVLAESVETQDQLNVLQELGCDYAQ 519

Query: 937 DSHVASPLGFNSIL-KLLKE 955
            +    P+   +   + LKE
Sbjct: 520 GTLFNKPIKVETFEVRYLKE 539


>gi|83643904|ref|YP_432339.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83631947|gb|ABC27914.1| predicted signal transduction protein containing a membrane domain,
            an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 1290

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 95/433 (21%), Positives = 184/433 (42%), Gaps = 15/433 (3%)

Query: 525  SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
              E +   +  D LTG+  R+ F  +   ++ LS + D  +   +++ + +++ IN+  G
Sbjct: 865  LYEQLSHASSHDELTGLIQRKEFERQ--ALVKLSQSSDGDKFVGLLVSLGQFRLINESAG 922

Query: 585  IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            I  GD  L  +   +  L     ++ R  G+ F +++  E  +  +     A+R+     
Sbjct: 923  IEAGDQALKDIASLLKSLFTPKTLVCRFGGDEFMLLVEGEATA-AVEKITTALRQ---YQ 978

Query: 645  INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            +       +V+ASIG+   +   +    M++  E A   AK +GGN VE F V      R
Sbjct: 979  LRWESNVFSVSASIGYVEVSGGVLDVPHMVQAVEEAARRAKSKGGNRVEEFDVDRALIAR 1038

Query: 705  VMIKED----LCLAVENSELYLVYHPIIRLMDEEIVG--LEALIQWDHPKWGNISSSEFM 758
                      L   +EN  + L    II L     +G   E L+         I + +F+
Sbjct: 1039 RDAIASKVASLGKELENERVLLRCQKIIPLHPGAKMGAQYEILLSIYDDNGNLIPAGDFV 1098

Query: 759  LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
              AE    ++A++ +++  +   +   R Q       + IN++   L D  L E +   +
Sbjct: 1099 RAAETYKRMQAVDRWVVGHMLDWMSKNRQQIETMGG-VSINLSGHSLNDEGLLEFIFERL 1157

Query: 819  SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +K      ++    +E+  + N       +  L++ G    L DFGT  +   YL  +P 
Sbjct: 1158 TKYDCPMDKMCFEITEAAAISNLCDVSEFIVELQEYGCRFCLGDFGTAMASYQYLKQLPV 1217

Query: 879  DTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
            D +K +GS +    + +    ++RS+  MA  +   IIA  +  +  ++ L ++G DY+Q
Sbjct: 1218 DLIKVDGSFVKDVATDQNDQTMIRSMTEMAHYLGREIIAPQVETKESLEMLQKLGVDYVQ 1277

Query: 937  DSHVASPLGFNSI 949
              ++  P    + 
Sbjct: 1278 GFYIERPKSLANF 1290


>gi|213851930|ref|ZP_03381462.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 327

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 141/328 (42%), Gaps = 9/328 (2%)

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                         +   I   + +   ++  + SIG A +    +T+  +   A  A +
Sbjct: 1   GVKEPWHAITLGQQILTIINERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAF 59

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            A+ +G N ++ F  +   + +  +  + D+  A++N +  +   P + +    ++  EA
Sbjct: 60  TARRKGKNQIQFFDPAQMEAAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEA 119

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++   P          +   E   ++  +  ++LE   R + +W+++     + + +N+
Sbjct: 120 LLRMQQPDGSWELPEGLIERIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNL 177

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++  L+   +   +  L+++    P  + L  +ES  + +P  +  +L  LR  G+ + L
Sbjct: 178 SALQLMHPGMVSDLLELLNRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIAL 237

Query: 861 DDFGTKCSLLSYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917
           DDFG   + L  L +   +P D +K +   + G      +++ +II MA+++   +IA+ 
Sbjct: 238 DDFGMGYAGLRQLQHMKSLPVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEG 296

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +  E     L + G +  Q    A P+ 
Sbjct: 297 VEDEAQRAWLEQAGVNVAQGFLFARPVP 324


>gi|74317013|ref|YP_314753.1| diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056508|gb|AAZ96948.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Thiobacillus denitrificans ATCC 25259]
          Length = 762

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 188/482 (39%), Gaps = 23/482 (4%)

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +   +    R + +    +    G   D              A QD LTG  NR+++ + 
Sbjct: 288 RIRELENIRRSLYDYQLQLRELHGSLED------QNREFHSQARQDALTGCHNRRAYEED 341

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
             T               ++ D D++K IND  G A GD VL  +   +   L+  D L 
Sbjct: 342 WETFRRDLKNAPQG-VAFLLFDCDRFKAINDTYGHAKGDRVLTIIADALVMALRANDRLY 400

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASW-TSSKI 668
           RL G+ F   L S     +    A   +  +     + L     V  SIG A        
Sbjct: 401 RLGGDEFATFL-SRTTPGQAKQIAQRCQSLLDASAFSELGISEPVGISIGIAFCGPEHAE 459

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-----LCLAVENSELYLV 723
              E+ K+A++AMY AK  G N +  +   + R+ + ++                 + + 
Sbjct: 460 QIDELPKHADIAMYTAKQPGRNRIALYGEDTERAAQALVASRETNALFQALSTPGMVEMH 519

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y  I  L   +I   EAL +  +     I    F+ +     +    +L +L ++  D+ 
Sbjct: 520 YQSIHSLPGRKIDYYEALARIRY-NGELIMPDAFLPVINNRRLETEFDLAVLAQVDADLS 578

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
               Q     I I  N++++ L   E+   +   +S+       + L  +E+ ++     
Sbjct: 579 ---SQRLPAGIGISFNLSAQSLSRAEVVSLLLE-LSRH-IPRHPLMLEITETSLITQMAE 633

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRS 901
               L  LR +   + +DDFGT  S L YL  +P D VKF+ SL++   +   A  ++  
Sbjct: 634 VSTYLDLLRTVHYRIAMDDFGTGYSPLRYLVDLPVDVVKFDISLVSKLAQDNRAGQVVAD 693

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
              M      +++A+ +  +  ++++  +G +++Q   ++ PL  + +      +  + +
Sbjct: 694 FARMMSEAGYSLVAEGVETDAVLRKVESLGVEHVQGYLLSRPLPLDKLANAGAAQERVAE 753

Query: 962 NT 963
           + 
Sbjct: 754 SA 755


>gi|170740443|ref|YP_001769098.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
 gi|168194717|gb|ACA16664.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
          Length = 554

 Score =  299 bits (766), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 2/303 (0%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER + A+    D  WDW++    +  +     +LG A G + G   +W    H  DR   
Sbjct: 251 ERLAFALDSGTDGHWDWNLASGEIWFSDRWLAMLGYAPGELAGTRESWEQLCHPEDRPRV 310

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQK 523
              L + +  R      E R+R  +  + W++ R R M  +  G  L  +G   DIT +K
Sbjct: 311 LRQLAAHLEGREPAFVCEQRLRHRNGTYAWILARGRVMRRSPAGAPLTMVGTHLDITHRK 370

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       A  D LTG+PNR  F +RL   L  +     +   V+ +D+D +K +ND L
Sbjct: 371 EAEARAAHLASHDPLTGLPNRLLFQERLARHLAET-RSRGVPCAVLCLDLDGFKAVNDSL 429

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L  +  RI   L+  D +ARL G+ F ++L       +    A  +  ++  
Sbjct: 430 GHPIGDALLREVADRIRATLRASDTVARLGGDEFAVLLPGHQPRERSGRVAERLIDAVRE 489

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L E ++ V  SIG A      +   ++++ A++A+Y AK  G N        + +  
Sbjct: 490 PLRLKEMQVVVGVSIGIAVAPEDGLDEDDLIRRADVALYRAKGGGRNTYRFHEAEAAQDR 549

Query: 704 RVM 706
              
Sbjct: 550 LRA 552


>gi|268608224|ref|ZP_06141951.1| diguanylate cyclase/phosphodiesterase [Ruminococcus flavefaciens
           FD-1]
          Length = 561

 Score =  299 bits (766), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 189/444 (42%), Gaps = 18/444 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + + +E     AF D    + N + F   L +++   +  +      +  ++ +   IN 
Sbjct: 123 RTRMIELSRRLAFYDPEFKVYNLKFFHRFLASLIKDGSIYEYYT---LNFNLKQLNMINS 179

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +G      V++     I   L   + L RL G+ F  ++     +    D +  +  + 
Sbjct: 180 RIGRNNCTKVMIRYIELINSKLTEKEALCRLGGDNFAAVIK----AEHFPDISELLLGTT 235

Query: 642 AMPINLLEREITVTASIGFASWTSSKITS---SEMLKNAELAMYHAKHRGGNHVESFRVS 698
               ++ E  + ++AS G    +    T+    E++    +AM  AK      +  F   
Sbjct: 236 VDTSDICEESVRMSASAGLYKISEQPRTALTSGEIMDRTHIAMQKAKLSAKAQIVEFDQE 295

Query: 699 SFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            F   +    I      A+   E  +VY P + LM+  I G EAL +W H     +S   
Sbjct: 296 LFEMQKRASAINSAFDDALAKEEFLVVYQPKVSLMNYTISGAEALCRWIH-DNQVVSPGL 354

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ I E+   I  ++ +ML ++  D+  W D  ++PP+ I +N++   L +  L   + +
Sbjct: 355 FIPILEQSNDICKLDFYMLRKVCSDLRRWID-NDIPPVRISVNLSRMHLKNPMLVSQICS 413

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +       I+L  +E++     +  +  +  LRK G + ++DDFGT  S L+ +  I
Sbjct: 414 IVDEFSIPHDLIELELTETINPVEFKELQKAINGLRKNGFATSVDDFGTGYSSLNLIKEI 473

Query: 877 PFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
           P++ +K + SL+    + +  +   + + I+ MAK +    +A+ +     ++ L+   C
Sbjct: 474 PWNVLKLDKSLLPACGSENVWQDRILFKYIVAMAKEMGLECVAEGVETMEQLQLLSENNC 533

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           +  Q      P+        L++R
Sbjct: 534 EMAQGFFFDKPMNVKDFEDKLRDR 557


>gi|312198840|ref|YP_004018901.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311230176|gb|ADP83031.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 997

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/455 (22%), Positives = 177/455 (38%), Gaps = 39/455 (8%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
           + E +   AF D LT +PNR  F   L   ++     +     V+  D+D +K IND LG
Sbjct: 376 THERLRYQAFHDALTNLPNRALFTSELERAIEN-HRAERQAVIVLFCDLDDFKSINDTLG 434

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI----ADFAIAMRKS 640
            A GDD+L ++  R+   ++  D+ ARL G+ F I+L     + +           +   
Sbjct: 435 HAAGDDLLRAVAGRLRGAVRDEDLAARLGGDEFAILLTDLAGAGEARITGEHTGRRILAV 494

Query: 641 IAMPINLLEREITVTASIGFASWT--SSKITSSEMLKNAELAMYHAKHRGG------NHV 692
           +  P  +      V  SIG A          + ++L  A+ AMY AKH         +  
Sbjct: 495 MRQPFTVRGSRRYVRVSIGLAIADVQEPVDDAEQLLHRADTAMYTAKHSHKGGLVLSHGG 554

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
           E    S   +    +           EL + Y PI RL D + +G EAL+ W  P    +
Sbjct: 555 EPVATSVAATIGPSLTLKPTTDGTTGELAVCYQPIRRLADGQAIGAEALLCWVRPSGYPV 614

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            + E +  AE    I  +   +L R  R++ + RD+    P+ + +N++   +   EL +
Sbjct: 615 PAHELLRAAERDGSIAELETRLLTRACRELPAVRDRL-RAPVRLHVNVSPSRVGGRELAD 673

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  + +       + L  + +  + +   +   L RL   G+ + LDD G   + L+ 
Sbjct: 674 LVEGALRRHGLDAGALVLEVAGTAHIPDLAAAETTLRRLVGSGVDIALDDVGGADTSLAA 733

Query: 873 LGYIP-----------FDTVKFNGSLMTGST-----EKRIAILRSIIPMAKNIETTIIAK 916
           L  +P            D V          +         A   ++I  A      + A 
Sbjct: 734 LYQLPLRLLKLDALLSADLV------TARPSPWPSLPSARA---AVIGFAAATGLAVGAD 784

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            I     +++L   GC + Q S +  P     +  
Sbjct: 785 GIETPTQLEDLRAAGCGFGQGSLLGPPRTLELLAA 819


>gi|88798131|ref|ZP_01113718.1| predicted signal transduction protein containing sensor and EAL
           domains [Reinekea sp. MED297]
 gi|88779328|gb|EAR10516.1| predicted signal transduction protein containing sensor and EAL
           domains [Reinekea sp. MED297]
          Length = 861

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 175/454 (38%), Gaps = 27/454 (5%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
            L  A  D + G+ N     + + T +  S      R T++ I+I     I   L     
Sbjct: 400 RLYQATHDEVVGLANTGLLKEAIKTSMAQSIE---PRLTLVAIEISNLDSIRPYLRDQEM 456

Query: 589 DDVLVSLTRRI---------------GELLKFPDILARLSGNRFGIILISENNSLKIADF 633
            D+  ++++                   +      + R         L+  ++   +   
Sbjct: 457 SDLFHAISQSFDTELSGYGHLHTIDDQSVHHRHCAVLR---GEILCFLMDNHSRSHLDAT 513

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
             A+ +              +      A    +   ++E+L+    A+  AK     +  
Sbjct: 514 LKALSQRDNYNPMPDSLPFRIQCHFAGAIL-QNNTQATELLRQVRHALQTAKTSQQAYHI 572

Query: 694 SFRVSSFRSD-RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
              +        V + +DL  A+E  +L L + P I L   E    E L++W HP  G I
Sbjct: 573 YQPLEVQSQGLHVRLAQDLVNAIEAGDLELYHQPQISLTQPEDRASEVLLRWHHPTEGLI 632

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            + + + IAE+  +I+++  ++L        + R Q     I + INI++ DL       
Sbjct: 633 PTIDVITIAEQTGLIRSLTRWVLSAAFSQTKTLR-QLGYCGIRVSINISANDLSHRGFSS 691

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L+  T        L  +ES+ + +    +     LR  G    +DDFGT  S LSY
Sbjct: 692 DVIGLLDSTGLPADIFTLEVTESMHLSDQAVFQQNFTELRDHGFLFAIDDFGTGYSSLSY 751

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
               PF  +K + S +T      KR  I+ + + MAK ++  + A+ I  +   + L  +
Sbjct: 752 ANEHPFSELKIDRSFVTDMLNDPKRQTIVSATVSMAKKLKLIVTAEGIEDDATAETLKAL 811

Query: 931 GCDYIQDSHVASPLGFNSILKLL-KERFPLVKNT 963
           GCD +Q    A P+ F+     L +++ PL ++ 
Sbjct: 812 GCDKLQGFGFARPMPFSDYQAWLNEQQGPLSEHA 845



 Score =  138 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 110/363 (30%), Gaps = 9/363 (2%)

Query: 39  SSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSD 98
            SD    L+        +     +    D                 +  W    L N + 
Sbjct: 38  QSDPPSGLSYEFAYLKEEVAVADLLRLPDSAFTGSDWNQIPLGFSDQTYWLRITLDNQTS 97

Query: 99  SQLERLIVVPHYRLVGSHFFSPDLGSR-RIISVTPSEGFSLDR-IPNSDSDVFRITINPG 156
           S  + ++V+ +  +     FS +       + VT  +  +  R         FR++  P 
Sbjct: 98  SARDLVLVLDNPMINRLEVFSTNADGLPEPLLVTGDQTQNPVRLQLMLPHVPFRLSDIPQ 157

Query: 157 AVVTFIMEISTPNLP--QIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNR 214
               F ++  T   P   + +   + +     S  L  G   G+  L+ ++  + YM  +
Sbjct: 158 R---FYIKAQTNGAPIVPVTILTADGFNQLEQSLHLIWGSFCGIILLMVVYNLVLYMGLK 214

Query: 215 SSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP-SGELLIWRACSEIALSSSLIIFLFMYL 273
               +      + +L  + +  G+   L        L           +    +F   +L
Sbjct: 215 DETYVYYSGYIFSLLLLLGVAHGYGYYLFPRSLQQWLSANIISLNALATLMTFLFASSFL 274

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYP-MVTASIARITLASIVLYYTYFIIYHGMK 332
            ++     +  +  +    + I    +   P  + A I     A   +     I+Y   +
Sbjct: 275 RYSAEQGPLSRVMLTVRHALWIYLAFTLVAPEHIEAQIYPFIQAVGYVVVMAMILYRIPE 334

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                   I +W+ ++I     ++  +  ++   +        +++ + +    +    +
Sbjct: 335 KLTWTRYYIISWLPLYIGGAIAFLLFSGDIEYSFLTRHAFLFSIVLEMALISMALADRFS 394

Query: 393 TGY 395
           T  
Sbjct: 395 TLE 397


>gi|149377742|ref|ZP_01895476.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
 gi|149357968|gb|EDM46456.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter algicola DG893]
          Length = 695

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/584 (16%), Positives = 219/584 (37%), Gaps = 24/584 (4%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            +++V+      ++           +    +R  L +  S D +   +     +      
Sbjct: 116 QLVLVVNRELGALEDRRRRRILESHLREAEQRCQLLLESSKDAIAYIN-DGMHIYANQSY 174

Query: 435 ATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              LG      +       L  +    ++ ++  + SF       +      R +D+Q  
Sbjct: 175 MEFLGYDDIDDLICIP--VLDTLTPESQEKYKEFMKSFADSGEDGMTMNCVARRSDDQEL 232

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            + + +   +  +G+    I I  + ++  +  E I   + QD LTG+ NRQ  +D L  
Sbjct: 233 SVTMSVSA-ATYDGETCTQIVIQPEHSDA-ELEEKIRQISSQDLLTGLFNRQYLMDALGQ 290

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +  +  D+     +  I +D +  +   +GIA  D +L  L   + E      +LARLS
Sbjct: 291 TIATAGKDNKT-GALAYIALDNFMALKGQVGIAGADLMLGDLATLLKEQAPEDMVLARLS 349

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            + F ++       +         +K      ++  R + +T SIG A+ T +   + ++
Sbjct: 350 DDAFCLLCQPCEEKVMAERCEAICKKVEDHLFDINGRTVQLTLSIGVAAITENAPKAPDL 409

Query: 674 LKNAELAMYHAK-----HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           +  A  A    K      +G   +          D     + +  A++++   L++ PII
Sbjct: 410 MGRAHTASSELKKKPGHEQGNGVLVYNPADYEAMDESNSVDAIQKALDDNRFKLLFQPII 469

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L  E     EA ++  +     +S  +F+       M   I+ +++ +  + + S R +
Sbjct: 470 NLRGEGEEHYEAFVRMLNKDNEEVSPYDFLPPVGPSEMAIKIDRWVILQTIKQLSSHRSR 529

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
            +   +F+  NI ++ L D      +   +         +     E       ++++   
Sbjct: 530 GHDTRLFL--NITAETLEDKTFTPWLSVALKAARLPGDSLIFQIREGDANNYMKQAKDFA 587

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA------ILRSI 902
             + ++   +++  FG   +  + L +I  D VK +GS      +K  A      +++S+
Sbjct: 588 KAVHELHCKVSICQFGCALNPFNTLKHIDVDYVKIDGSFTEELQKKDDAKEEVKEMVKSL 647

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               ++     I   +     +  L + G +YIQ  ++ +P+  
Sbjct: 648 ----QSAGKLTIVPLVENAGVLATLWQAGVNYIQGYYLQAPVPE 687


>gi|225848925|ref|YP_002729089.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643532|gb|ACN98582.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 442

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 187/422 (44%), Gaps = 11/422 (2%)

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A  D LT IPNR+  +  L   +  +    N   ++ +IDID +K IND  G  VGD
Sbjct: 23  YNLATLDFLTKIPNRRKLMMDLEKEILRAKR-FNRPLSIALIDIDDFKIINDSFGHDVGD 81

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
             L+ +   + + ++  DI+ R  G  F +I+   +    +       +        + +
Sbjct: 82  LALLHVVDILKDSIRLTDIVGRYGGEEFLVIMPETSLDGTLKAAEKIRKNIEQSSFIIND 141

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRVSSFRSDRVM 706
            +I  T SIG AS       S  +LK A+L +Y AK  G N VE      + S  S    
Sbjct: 142 TKIPFTVSIGIASTELHGYDSQLLLKAADLGLYKAKKEGKNRVEFLTKDEIESLISSEFE 201

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK-WGNISSSEFMLIAEELC 765
            K  L  A++   +   + PI++    EIVG E L +   P+    + + +F+  A    
Sbjct: 202 SKNILVSAIKEDRIVPFFQPIVKSDTLEIVGYEVLARIYIPEEDKYLPAYKFIPEAIRYR 261

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +++ I+  + E+  R I     + N   I I  N++          + +  L++    +P
Sbjct: 262 VLEKIDKIVQEKAIRYIS----EKNKKNILIFFNMSKTFFEKVSNLDDLLLLLNSNDVNP 317

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + I L  +E   + +    +  +   + +G +  +DDFG   S   YL + P D VK +G
Sbjct: 318 NNIFLEVTEEEALSDLTTLKEYIRYGKTLGFNFAIDDFGAGYSNFIYLKHFPIDLVKLDG 377

Query: 886 SLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL++   +      I+ SII +A++    ++A+ +  + + + L R+G DY+Q  +   P
Sbjct: 378 SLISDIDKDVDDQVIIESIIKIARHKNIKVLAEMVEEKEEYETLKRLGVDYLQGYYFGKP 437

Query: 944 LG 945
             
Sbjct: 438 TP 439


>gi|313682786|ref|YP_004060524.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155646|gb|ADR34324.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 560

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 176/431 (40%), Gaps = 34/431 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K+ LE        D+LTG   +    ++L  +     +  +   T+++ +ID +  IN
Sbjct: 155 QKKELLEESYM---YDSLTGCYKK----EKLDQM-----SQTHPEHTMILCNIDNFDSIN 202

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G  +GD +L      +   L   + + R++ + F I   +  +   I       +  
Sbjct: 203 STYGYEIGDRILFMFAEYLRNHLNSTNTIYRVASDEFVIFYPTSTD-EPICPVESLYQGI 261

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS- 699
            +    + +  I++T +IG AS  ++       L  A  AM  A+  G N    FR  S 
Sbjct: 262 QSYIFKVDDILISLTCTIGIASSPNA-------LVKAHAAMKEARQIGKNRYHVFRDDSD 314

Query: 700 ---FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               + + +     + LA+    +   + PI+     +IV  EAL +        IS   
Sbjct: 315 FIARQKNNIEWMRKIRLALNEDRIVPYFQPIVDNATGQIVKYEALARII-ENGTAISPRH 373

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A+ + ++  I   ++E+                +   +NI  +D+ +      M  
Sbjct: 374 FIEPAKLVGLLPQITQVIMEKS-------YAMFADKSMSFSVNITEEDIQNRNFAAMMAQ 426

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L  K    PSR+ L   E++     + S   L  L ++G ++ +DDFG+  S    +  +
Sbjct: 427 LGEKYGIEPSRVTLEILENISANGTDESVKQLHELSQMGYTIAIDDFGSDKSNFYRIHSM 486

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + + +      +    I+++I+ +A+++    +A+ +  E    ++  MG +Y
Sbjct: 487 HVDIIKIDAAYIQDIDCNKTSELIVKTIVSLAQSMGIPTVAEFVSSESVFHKVKSMGINY 546

Query: 935 IQDSHVASPLG 945
            Q  +   P+ 
Sbjct: 547 SQGYYFGEPMP 557


>gi|18309227|ref|NP_561161.1| GGDEF/EAL domain protein [Clostridium perfringens str. 13]
 gi|18143903|dbj|BAB79951.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 775

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 199/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +E +      D LT + +R  FL +L TI        N  
Sbjct: 326 LVMILLVCRDVILRKDNLRLIESVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKTVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLDQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 553 ETLLRWKHDKLGEISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDK--RIKLKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKEYRIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK +  T + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVINARTPSKLAVIEAISILAKKLNVTSVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 731 VETYEDFKLFSNLGFDIVQGYYFSKPLTKSEIIDYIK 767


>gi|294340595|emb|CAZ88981.1| hypothetical protein; putative EAL, GGDEF, GAF domains [Thiomonas
           sp. 3As]
          Length = 642

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/426 (22%), Positives = 169/426 (39%), Gaps = 14/426 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +      D L+G  NR +    L      +    +    ++++D+D++K IND  G   
Sbjct: 218 RLQLQNMLDPLSGALNRHATELALQDEFIRARASMDG-FGLILLDLDRFKLINDSYGHPA 276

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD VL    R +   ++  D + R  G  F IIL  +      +       +  +  +  
Sbjct: 277 GDRVLQETARLLRRHVRETDRVGRWGGEEFLIILPHQTIDQVFSTAERLRFEIESAYVKH 336

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             R I  TAS G  +W     T   ++   +  +Y AK  G N V         S+ + +
Sbjct: 337 EGRRIQFTASFGIITWAGQSCTPDRLISRLDSFLYDAKRMGRNQVR--GADGRGSETLSL 394

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +  A+E  ++   Y P+I L   E+V  EAL +        +++ EF+  A  L M 
Sbjct: 395 GAQIQEALETQQIRAAYQPLIDLRSGEVVAQEALARLVKADGTVMAAGEFIGAAHRLRME 454

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT------ 821
             I+  +  +     ++   Q       + IN ++  L      E +     ++      
Sbjct: 455 WRIDEAVSRQALAHCLARAHQGQSLQRHL-INCSADFLGRAGCIETLLETAQRSCAGCGD 513

Query: 822 --LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                   + +  +E  ++G+P+++R LL  L   G  L +DDFG+  S   YL  +P  
Sbjct: 514 VMHGKSKPVIIEVTERQLLGDPKKTRQLLQPLLDFGFELAVDDFGSGYSSFLYLLDLPVR 573

Query: 880 TVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K  G L+       +  A++ SI  MA  +    IA+ I  ++    +  +G D+ Q 
Sbjct: 574 YLKIEGELVRRAVDDVRARAMVESIQAMAFRLGICTIAEGIENQVTSDLMRDLGIDWGQG 633

Query: 938 SHVASP 943
                P
Sbjct: 634 YLWGRP 639


>gi|212704053|ref|ZP_03312181.1| hypothetical protein DESPIG_02106 [Desulfovibrio piger ATCC 29098]
 gi|212672558|gb|EEB33041.1| hypothetical protein DESPIG_02106 [Desulfovibrio piger ATCC 29098]
          Length = 1002

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 170/446 (38%), Gaps = 29/446 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D +T  PNR  FL     IL            +  ++I K K IN   G+  GD ++  
Sbjct: 557 TDPVTQGPNRARFLMDAAKILQKDPR----CHYLCTVNIRKLKLINRACGLRTGDSLIRF 612

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNS------LKIADFAIAMRKSIAMPINLL 648
             R      +  ++ A     ++ ++    + +       ++   A   RK    P++  
Sbjct: 613 CNREFALRSRQGELAAYSGSGQYLLLWKCPDETSFTQRMEELFSVADMARKLYQRPVSFS 672

Query: 649 EREITVTASIGFASW-----TSSKITSSE-------MLKNAELAMYHAKHRGGNHVESFR 696
                +                +    +E        L  AE A       G        
Sbjct: 673 CGVYVIRNGADMEESEPQPTPGTGKNVNESERFVSRYLLYAETAEASIASGGYRSQFLIY 732

Query: 697 VSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                + ++    I+  +  A+E  E  +   P + L D  + G EALI+W  P    + 
Sbjct: 733 NELIGARQLKANDIENRMVNALERGEFTVFMQPQLCLADRRLHGAEALIRWQGPDGKMVY 792

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ + E+   I+ ++LF+L+ +   I    D+    P  I IN +      +   E 
Sbjct: 793 PDEFIPLFEQNGFIRELDLFVLDTVCAWIRRRLDEGKKVP-PISINQSKALFFHDNYVET 851

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  + S+       + +  +ES+   + E     L  LR+ GI L+LDDFG   S ++ L
Sbjct: 852 VLTIASRHDVPTHLLHVEVTESMAWLDEEAFIRTLDALRRAGIGLSLDDFGKGYSSMAML 911

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
               FDT+K + + +    +K+ +   I+ S++ MA+ +   I+ + +  E  +++L   
Sbjct: 912 HSFGFDTIKLDRAFLAPGQDKQRSVWIIISSLVDMARRLGIEILCEGVETEEQLQKLLAS 971

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
            C Y Q    + P+   +    +   
Sbjct: 972 HCKYGQGYLFSPPMNMETFDAYVDAH 997


>gi|146308119|ref|YP_001188584.1| diguanylate phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145576320|gb|ABP85852.1| diguanylate phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 453

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 3/254 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  DL  A+   +  L Y P +   +  ++G E LI+W HP+ G +   EF+  AE   
Sbjct: 200 ELDSDLRAALRERQFVLYYQPQLNAAN-RVIGAELLIRWQHPQRGLVGPGEFIDYAENTG 258

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++LE+ A  +  W D+     I + +NI+ K          + ALI +   + 
Sbjct: 259 LIIPLGQWVLEQTAAQLRHWSDEPLFRDIGLAVNISQKQFRQPGFVAEILALIERHGIAA 318

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +E++++ + E     +  L + G+  +LDDFGT  S LS+L  +P   +K + 
Sbjct: 319 QRLELELTETLIVHDMEDLTRKMNALVEHGVRFSLDDFGTGFSSLSHLKRLPLSKLKIDR 378

Query: 886 SLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +    +      I+R++I + +++  T+IA+ +  E   + L   GC   Q   +  P
Sbjct: 379 SFICDVLTDANSETIVRTVIALGQSMGMTVIAEGVETEAQRRFLADNGCSQFQGYLLGRP 438

Query: 944 LGFNSILKLLKERF 957
           +        ++   
Sbjct: 439 MPLADFCAFVQRHN 452


>gi|119776397|ref|YP_929137.1| GGDEF domain-containing protein [Shewanella amazonensis SB2B]
 gi|119768897|gb|ABM01468.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           amazonensis SB2B]
          Length = 862

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 183/425 (43%), Gaps = 17/425 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I  +++  + ++ +A  D LTG+PNR  F +RL   +         +  ++ ID+D++K+
Sbjct: 434 IQRRREVEQKLIHDAKHDALTGLPNRSMFTERLGQAVRHVRRHGRDQFALLFIDLDRFKQ 493

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  L+   RR+   ++  D L RL G+ F ++L   N      + A  + 
Sbjct: 494 INDTLGHLEGDRFLIETARRLSHCIRENDTLGRLGGDEFVVLLDQINTPKDAEEVAERIL 553

Query: 639 KSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L +      ASIG A    S + T   ML++A+ AMY AK RG      +  
Sbjct: 554 SQLSEPFQLGDALFQSGASIGIAISGRSQQDTPESMLRDADAAMYQAKSRGKGCYVVYDS 613

Query: 698 SSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +  +  +  L  A+   ELYL   P+  L   E +     + W   K G ++  
Sbjct: 614 KRREEHQAELHDEALLRDALARDELYLKILPVESLSTGEPLAYRLSLGWRPSKGGELAED 673

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + IAE   +I  ++  +L            + N   + +   ++S  L       G++
Sbjct: 674 TILSIAERSNLILELDRCLLR---HLKRPLPLELNDAELHLC--LSSAHLKHKHALRGLK 728

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++ +    P+++ L F E  ++ + +        L K+G+S  L  +G   S L  L  
Sbjct: 729 NMVRELNLDPAKLWLFFDERALVQDTQGHIAGFEALGKLGVSFGLSGYGNGYSSLKSLTL 788

Query: 876 IPFDTVKF----NGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           +P   ++     +         +++ +L +    A ++  T+IA      +  + L + G
Sbjct: 789 MPIKALRLAPTTDR-----LGSEKVRLLTASAMAASSLGLTVIASGTECSLTRQSLVQAG 843

Query: 932 CDYIQ 936
            D+IQ
Sbjct: 844 IDHIQ 848


>gi|46203172|ref|ZP_00051942.2| COG5001: Predicted signal transduction protein containing a
           membrane domain, an EAL and a GGDEF domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 381

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 175/372 (47%), Gaps = 9/372 (2%)

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +GD VL+ + +RI   L     +ARL G+ F ++          A  A  + +++A P +
Sbjct: 1   MGDRVLIEVAQRIRTTLPAECDIARLGGDEFAVVFDRTQVIENPAALAERLIRAVAEPFD 60

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
             +    +  S+G         + +++L  A+ A+Y AKH G NH   F     +   + 
Sbjct: 61  SFDAG-RLGMSVGICHRP--AESLTQLLSCADEALYAAKHTGRNHFRLFDEGLRKRLEMR 117

Query: 707 IKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            + +  L  A+    L + + PI          LEAL++W HP  G +S  + +  A   
Sbjct: 118 RECERGLSQALAEGALKVWFQPIFGCGGRSATSLEALVRWHHPVHGWVSPPDLIAAAAMA 177

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            + +++  F+LE++   + + R +     + + +N++ +++    + E +   +      
Sbjct: 178 GLTESLLRFILEQVCTMLCALRSRGFHT-LSVAMNVSPREMAQIPVDEIILGRLRALGLP 236

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + +++  +E   + + E  +  L  L + GI + LDDFG   S L+ L  +  D VK +
Sbjct: 237 TTVLEIEITEETAL-DIEAVQGKLLALSRAGIRVALDDFGNGYSSLASLRQLRADRVKIH 295

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+TG TE   +  ++++++ + + ++  ++A+ I    D+  L  MGC ++Q  H+  
Sbjct: 296 RSLVTGLTEAEDKRELVQAVLGLGRALDLEVVAEGIETADDLATLQAMGCPFMQGFHLGR 355

Query: 943 PLGFNSILKLLK 954
           P   + IL  L+
Sbjct: 356 PQPADDILDSLE 367


>gi|225850662|ref|YP_002730896.1| putative eal/ggdef/pas domain protein [Persephonella marina EX-H1]
 gi|225645513|gb|ACO03699.1| putative eal/ggdef/pas domain protein [Persephonella marina EX-H1]
          Length = 624

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 111/567 (19%), Positives = 229/567 (40%), Gaps = 44/567 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            +  + D +W  D+    +      A + GL    + G     + Y+             
Sbjct: 76  VLDTTPDPIWIKDLNLRIIYVNQAFADLFGLKKEEIIGKSD--IEYLPSEIAKESIFSDM 133

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT--------- 520
             +  ++     E      D +  +  +   P+ N +G I+  +GI+ DIT         
Sbjct: 134 QALEKKQSTHTVEK--IEKDGKVRYFDVIKTPLFNKSGKIVAILGISRDITNLVETKEEL 191

Query: 521 EQKK-----SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
           E+K      + + +      DN+TG   R  F++    +L           TV++IDI+ 
Sbjct: 192 ERKNRELLDAYQKLKELHEYDNVTGFMKRNKFIEEFDNLLKSKDRS---TLTVVMIDINN 248

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPD---ILARLSGNRFGIILISENNSLKIAD 632
           +K IN++ G   GD +L  ++ ++   ++  D   +L +LSG+ F ++   + +  +I  
Sbjct: 249 FKYINEIYGFEFGDRLLREISNQLKNFVENIDNTALLGKLSGDEFAVLFKRDIDLNEIVK 308

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNH 691
               +   I +         +  A             ++ E++ + E+A++       + 
Sbjct: 309 RFKEILSQIKLNTPKYHSIYSPKAVYCAVKVEPDITLSAEEIVTHMEVAIFDL-RESKDT 367

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             S          V ++E L  A+EN ++     P+    ++EI+G E   + +  +   
Sbjct: 368 DFSIIDLKENISSVELEEKLVKALENKKIVPFLQPVYDFKNDEIIGYEVFARIED-EGNY 426

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I + +F+ +A     I  I+  +LE +  +I+   +        + IN++S  L      
Sbjct: 427 IEAKDFITVAYRKDFIVPIDHEILEIVKNEIMPLIE----DDKKLFINLSSFSLNK---L 479

Query: 812 EGMQA-LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
           E +   +  + ++   R     +E   + N      +    R   IS ++DDFGT  +  
Sbjct: 480 ENIADPMAKEIIFIKDRSVFDINEQEFLRNISNITDIK---RSYNISFSIDDFGTGNTSF 536

Query: 871 SYLGYIP----FDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             L  I        +K +GSLM   G++E++  I+RSI+   K +    +A++I  E   
Sbjct: 537 RTLIRISEEKIISYLKIDGSLMKELGNSEEKKNIVRSIVAACKQLGIKTVAENIENEKIY 596

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
           + +  +G D  Q ++++ P  +  +LK
Sbjct: 597 EAVLDIGIDCGQGNYLSQPEHYERVLK 623


>gi|330863180|emb|CBX73307.1| uncharacterized protein yegE [Yersinia enterocolitica W22703]
          Length = 921

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/581 (18%), Positives = 231/581 (39%), Gaps = 13/581 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 338 ILRLIGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCTDQEMKITFMNPVAEKMTG 397

Query: 440 LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
            A+    G   ++ +   +  D       ++  + +R    L     +   D Q++ +  
Sbjct: 398 WANTIALGQPIQHIIKLTNGVDGPEIDNPIEHCLTHRPHSSLNESIVLHHRDGQYYDIQE 457

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            + P+    G ++  + +  D+ E +  +  +  +A  DNLTG+PNR +F ++L   +  
Sbjct: 458 SVAPLKTLEGTVVGAVLVFQDVGESRAMMRKLSHSASHDNLTGLPNRANFENKLKAAIQK 517

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S  D + +  +  +D+D +K +ND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 518 S-IDFDQQHALAFLDLDYFKAVNDTAGHPAGDALLKELSQLMRQHLRNSDCVARLGGDEF 576

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
           G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 577 GLLMLNCTLPHAEAITQSLVSMINGYHFYWEDKLYRIGASAGVTQISSSNSQRSEIMAQA 636

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE 733
           ++A Y AKH G   V  ++    +      +    ED+   +  ++L L   P       
Sbjct: 637 DIACYTAKHSGRGQVYLYQPRQKQLLARQHELLSREDVESILSENQLLLQVTPTAPPKTP 696

Query: 734 -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
             +   +   + D P+   +S S F   A    ++  ++ ++ E+    ++      +  
Sbjct: 697 LSVCFYQVSFEIDRPQSPLVSQSAFEEAATLYNLLPKVDSWICEQ---LLVDHAQAIHQK 753

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + I ++   LL  +  + +  L+ +TL  P  +     ES ++  P      L +L+
Sbjct: 754 GLALAIPLSELALLKEDFRQSLLTLVQQTLLPPQSLYWMIDESTLLQYPFAIGSFLAKLQ 813

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
           ++G  L + +FG   +    L     D +KFN  L+           ++  I   A+   
Sbjct: 814 QLGCKLIVKEFGHNLNDFELLAEHHIDYLKFNSELIAHIHLNQMDEVLISIINGTAQRAN 873

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
              +A  +     + +L  +G D    + +      + +L 
Sbjct: 874 IATLAGPVELPPTLSKLIDIGVDLADGTMIGRTEPLSEVLN 914



 Score = 97.7 bits (242), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 2/236 (0%)

Query: 297 FCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWM 356
                   +    +  + L     +    +I+  ++        I     + I  +  + 
Sbjct: 1   MTWMMIVSLSACYLGLMYLPFPFTFIIMALIWASIRLPRFETFTICFLATLLIAMMINFN 60

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
             T  +D  +   A     +L+V++    +   + A     + I     R   A+  S  
Sbjct: 61  LFTLHVDTKLSVQAFSFIPLLMVLIPPHAMAMVMHAFRMEKEHIVESENRFRNAMEYSAI 120

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            +         +     +  +LG    ++      +    H  D      +LD       
Sbjct: 121 GMALVSPEGKWMQVNQALCKLLGYRQETLLT--LTFQQITHPEDLSADLKLLDDLYHGHI 178

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                E R   +D +  W ++ +  + +     L YI    DI + KKS       
Sbjct: 179 PSYSMEKRYIRSDGEVVWALLVVSVVRDHEQQPLYYISQVEDINDLKKSEIVNRRL 234



 Score = 92.7 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ DI +  ++    +  +  +   +     R W  YIH  D + 
Sbjct: 235 MERITLANEAGGIGIWELDIRKQLISWDKRMYELYHVPLNTPV-DERVWQQYIHPEDINR 293

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +    + +  R+   + +FR+   +     +  +   + + NG+ILR IG   D+TE +
Sbjct: 294 VKREYSAALTQRQ-PYRLDFRLLLPNGDIVHLRNQANMICDKNGNILRLIGTTLDMTEIR 352

Query: 524 KSLE 527
              E
Sbjct: 353 NLTE 356


>gi|91791772|ref|YP_561423.1| GGDEF domain-containing protein [Shewanella denitrificans OS217]
 gi|91713774|gb|ABE53700.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           denitrificans OS217]
          Length = 873

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 196/426 (46%), Gaps = 11/426 (2%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++K    +  +A  D LTG+PNR  F++RL+  +       + +  ++ ID+D++K+
Sbjct: 434 IMQRRKIEAQLQHDAKHDGLTGLPNRSFFMERLSYAIKHGRRHGHDQFALLFIDLDRFKQ 493

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G   GD  L+   RR+   ++  D LARL G+ F I+L S   +    D +  + 
Sbjct: 494 INDTFGHLEGDKFLIETARRLKSCIRENDALARLGGDEFVILLDSIQGTQDALDVSDRIL 553

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKIT-SSEMLKNAELAMYHAKHRGGNHVESF-- 695
             ++ P  L +++    ASIG A     K   S  +LK+A+ AMY AK +G      F  
Sbjct: 554 YQVSQPYKLGKQDFISGASIGIAFSGHHKEDTSESLLKSADAAMYQAKSKGKGCYVIFDS 613

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           ++         +K+    A+   E+ + Y P++   D  I+ LE    W HP     + +
Sbjct: 614 QIDKQAKQAAEMKKAFKRALLQQEINISYAPVMNFNDLSIIALEPQASWKHPDGSLKTHN 673

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   +AE+  +I   + ++ + +  +      Q +   I I ++++S+ +        ++
Sbjct: 674 QLKSLAEQCQLIIHFDAYIFDHLNHNYSKLVQQFSN-KICIHLSVSSQHIKHKHGLRNLK 732

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             + K+    S I + F E   + + E        L ++ +++ ++ +GT  S LS L  
Sbjct: 733 RTLKKSQLDLSSIWVFFHEKAFVQDTENHISAFQHLSQMDVNIGMNGYGTGYSSLSSLSL 792

Query: 876 IPFDTVKFN----GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
           +P   +K +      L+    E+++ + ++    A ++   +  + +      ++L+++G
Sbjct: 793 LPISALKLDSNISKHLV---NEQQMQLTKAYQLAASSLGVDMFVEGVDTVQQKRQLSQLG 849

Query: 932 CDYIQD 937
               Q 
Sbjct: 850 YQQGQG 855


>gi|120611756|ref|YP_971434.1| GAF sensor-containing diguanylate phosphodiesterase [Acidovorax
           citrulli AAC00-1]
 gi|120590220|gb|ABM33660.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidovorax
           citrulli AAC00-1]
          Length = 595

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 174/433 (40%), Gaps = 8/433 (1%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D  T +PNR   L  L  +   +  +  +   + ++  D        +G+   + + 
Sbjct: 163 ARLDESTLLPNRTQLLQDLHGLCLAAPGEQRVLVLLELLPHDGIMDAARAIGMQPIEQLT 222

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL-ERE 651
               RR+   +     +      R  ++L    +   +A F   +  ++A P++      
Sbjct: 223 YEAGRRLAGFVGSQSRVYHTGVARLALVLRD-TDGQTVAQFTQQLLDTLAAPLSTGSGIV 281

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKED 710
           I     IG A +T     + + L+ A  A+YH    G         V         +   
Sbjct: 282 INQRRRIGLAPFTLEPADAVDSLRRANAALYHQPMSGTAVCSYDAAVDLSYRRSYELMAS 341

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+   E  LVY P           +EAL++WDHP+ G +S  +F+ + E+   I+A+
Sbjct: 342 IPRALMAGEFRLVYQPQFERASTRYTCMEALLRWDHPQLGTVSPGDFIPLLEKTTYIQAV 401

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             ++L      + +W D        + IN++ ++L        ++   ++   +PSR+++
Sbjct: 402 TEWVLHTALAQVRAWEDAGLEVD--VAINVSPRNLEQPGFAGMLRDAFARHRLAPSRLEI 459

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ V+     +   +   R +G+ + LDDFGT       L  +  + +K + +L+  
Sbjct: 460 ECTENAVLTEGP-TLEGIKAARAMGVRVALDDFGTGYCNFGCLYDLSAEVLKLDQALIRP 518

Query: 891 STEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                 A+  +R ++ +   +   ++A+ +       +L  +GCD +Q  +++ PL    
Sbjct: 519 IGTDARALDVVRGMVQLGHTLGYRLLAEGVETAEVFDQLMELGCDQVQGYYLSRPLPPAE 578

Query: 949 ILKLLKERFPLVK 961
               +     LV 
Sbjct: 579 AFAFVHRWNRLVT 591


>gi|310778157|ref|YP_003966490.1| diguanylate cyclase/phosphodiesterase [Ilyobacter polytropus DSM
           2926]
 gi|309747480|gb|ADO82142.1| diguanylate cyclase/phosphodiesterase [Ilyobacter polytropus DSM
           2926]
          Length = 432

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 176/414 (42%), Gaps = 27/414 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D+LT   NR   L+ L   +      D+   ++ ++DI     IN+ LGIA GD ++  +
Sbjct: 24  DHLTKTFNRNKGLEILENTIKKDNLQDSP-VSLCLVDIQNLAHINNKLGIAAGDKLIKIV 82

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +    +  D + R  G++F +IL     + + A    +++  +++     ++   + 
Sbjct: 83  GNILSSNFRKTDAVVRFEGDKFIVILKGCKANCRAA-LIKSLQNRLSLFNTSNKKNYYLK 141

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
             + F ++     T+ E ++               H  +       +   +I+E++   +
Sbjct: 142 LHMLFCAY--KGETAQEFIEK------------SFHQLNLHKKKQSTKDAIIQEEIIDGL 187

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
             +E    + P + + +++I   EALI+W HP+ G I   +F+ I+E+  +I  +   +L
Sbjct: 188 NRNEFRTFFQPKVFIREKQIE-FEALIRWFHPEKGLIPPDKFIPISEKSFVIHNLTKKVL 246

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +          D +      + +NI+     +    + ++ +++        I L  +E 
Sbjct: 247 KDAV-------DFSQKTNTKVSVNISPVVFQNPNFSKEIRKILNTREI-AELIVLEITEG 298

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
           + + N + +   +  L KIG+  ++DDFG   S LSYL  +P   +K +   +       
Sbjct: 299 IALDNFKVAVNKMKDLNKIGVEFSIDDFGIGYSSLSYLEKLPIAELKIDKLFVRNIHTDK 358

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               I+  +I + K     +IA+ +  +  IK LT +GC   Q  +   P   +
Sbjct: 359 INPLIIDFVIKVGKISGFKVIAEGVETKDHIKTLTSLGCHNFQGYYFDKPQSAD 412


>gi|308185381|ref|YP_003929513.1| hypothetical protein Pvag_pPag10003 [Pantoea vagans C9-1]
 gi|308055661|gb|ADO07831.1| Uncharacterized signaling protein [Pantoea vagans C9-1]
          Length = 594

 Score =  298 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/424 (24%), Positives = 199/424 (46%), Gaps = 11/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+PNRQ  +  L  +     T       +  ID+ +  ++   +G+   + +L  +
Sbjct: 167 DPVTGLPNRQRLIRDLQYLAVAGDTTPRRLVLIDCIDMSRAYELARTMGMNPVESLLKDM 226

Query: 596 TRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              +   L+    +++  ++  RF  IL   ++ L  A  A  +    A         + 
Sbjct: 227 ATLLPLRLRPAVGEMIYTVATGRFA-ILTRADSRLSAAWVAGRLEGISAD--MDEGLSVA 283

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-SSFRSDRVMIKEDLC 712
           +T   G A++ +  +++SE+L+ A  A+  A  RG           + RS+  ++  DL 
Sbjct: 284 LTPHTGEAAFVAGSMSASEVLRRAVSALNEAVGRGLPSQRFDIEAETQRSEDFLLMTDLK 343

Query: 713 LAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            A+ ++  LY+VY P I L   + VGLEALI+W HP  G +S + F+ +AE+  ++  + 
Sbjct: 344 TALRDNIGLYMVYQPKICLQSGKPVGLEALIRWRHPSRGELSPAAFIPLAEQTDLLSVLT 403

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            +++++    +   R+     P+   IN++ +D         +++ + K+    S + + 
Sbjct: 404 AWIIDQAVERLRRLRNNCIQLPLT--INVSVRDFACEGFASALESKMLKSKLPTSLLGIE 461

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E+  +     +   L  LR+ G +++LDDFG   S +SYL  +P D +K + SL++  
Sbjct: 462 CLETERILESPTALRGLEMLRERGFTISLDDFGAGYSNISYLRRMPLDVIKLDRSLISEL 521

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           +       I RSII M K ++ T++A+ +     +  LT  GCD  Q    + PL   ++
Sbjct: 522 SSDTASRIIARSIIAMLKELDYTVVAEGVECPDAVTSLTEYGCDQAQGYFYSRPLNEEAL 581

Query: 950 LKLL 953
              L
Sbjct: 582 DHWL 585


>gi|120556460|ref|YP_960811.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326309|gb|ABM20624.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 1249

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 165/428 (38%), Gaps = 15/428 (3%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +   + +   +  D LT + NR+ F   L   L           T++ +D+  ++ +ND 
Sbjct: 823  RNVYDQLSWASTHDELTRLLNRREFERMLEQQLARREDSR----TLLQLDLRGFRLLNDT 878

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD+ L  +   I   +     +AR  GN F +++  E            +     
Sbjct: 879  AGYQAGDETLKRVAEVICRHVGDGMPVARPGGNEFAMLVPEEQGPEIAKAL---LEAIAD 935

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             P     R  T+ A++G A    + I++ + LK AE A+  A+ +G      + + +   
Sbjct: 936  EPFEYGGRCYTLNANVGLAPELPALISAEKWLKAAEQALNSARDKGPGRFSIYTLDADDQ 995

Query: 703  DRVMIKED----LCLAVENSELYLVYHPII-RLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             R          L    E   L      I            E LI         I+  +F
Sbjct: 996  ARQEQIAARVAGLSNPDEERMLLRCQKIIPLHGSTRMGAQYEILISMYDDSGQLITGQDF 1055

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
            + +AE    ++A++ +++  +   +   +         + IN++   L D  L E +   
Sbjct: 1056 VRMAERYDRMQAVDRWVVGHMLDWLRD-QSPDPRHVGGVCINLSGYSLNDQSLLEFIYEK 1114

Query: 818  ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
            +S+      R+    +E+  + + +     +  ++++G    L +FG+  S   ++  +P
Sbjct: 1115 LSEKDAPIERLWFELTEASAIHDLQSVADFMLEMKELGCRFCLGNFGSGPSSFQFMRSLP 1174

Query: 878  FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             D +K + +            A++RS++ MA  +E  +IA  +     +  L ++G DY 
Sbjct: 1175 VDLIKIDSAFTGQLAANQTDQAMVRSMVDMAHYMEREVIASQVESREVLDMLRQLGVDYA 1234

Query: 936  QDSHVASP 943
            Q   V  P
Sbjct: 1235 QGFVVEKP 1242


>gi|325294702|ref|YP_004281216.1| diguanylate cyclase/phosphodiesterase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065150|gb|ADY73157.1| diguanylate cyclase/phosphodiesterase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 650

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 187/433 (43%), Gaps = 31/433 (7%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +++   ++   ++D LT + NR+   + +  I      D + +    +I+I  +K++N+
Sbjct: 234 LQRARRTLIIKVYKDELTKLSNRRKLEEDIRKI------DPSKKVYFALINIRNFKELNE 287

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDI---LARLSGNRFGIILIS--ENNSLKIADFAIA 636
           + G+  GD++L    + + +++K       + R+ G+RFG++  S   ++   I      
Sbjct: 288 LFGLTKGDEILSLFAKNLKKIVKKESKETNVYRIRGDRFGVLTCSKSLSDEFFIGFIKNL 347

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++        +   +  +  + G +           ++  AE+A   AK R  N     +
Sbjct: 348 IKSLEEETFEIEGLKFKLDVTAGIS------TNKDNLIIKAEIAEQEAKKRNMNLYVFDK 401

Query: 697 VSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                   +     +   L  A++N  +   + PI+ L   E+   E L++    +   +
Sbjct: 402 ELQKIYQDLHKNIIVASKLKEAIKNDRIVPFFQPIVNLKTGEVEKYEVLMRVFDEEGKLL 461

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S +EF+ IA++  +   ++  ++E+                I I +NI+S+DL   E+  
Sbjct: 462 SPNEFLPIAKKTGIYLKLSKRLMEKALEIAKK-------RNIKISMNISSEDLASTEMKN 514

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   +  +  + + I     E+    + E  +    +++++   L++DDFG+  S   Y
Sbjct: 515 WLLERVKNSGIAAN-ICFEIVETEAFNSLEILKEFYSKIKELNAELSIDDFGSGYSNFEY 573

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  I  D +K +GSL+    + +    + + I+   K +    IA+ +  E  ++++  +
Sbjct: 574 ISTIKPDYIKIDGSLIKKIPDSKEVEILTKHIVLFCKELNIKTIAEFVSSEEILRKVEEL 633

Query: 931 GCDYIQDSHVASP 943
           G DY Q  ++  P
Sbjct: 634 GIDYGQGFYLGKP 646


>gi|24216608|ref|NP_714089.1| signal transduction protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197937|gb|AAN51107.1| signal transduction protein containing GGDEF and EAL domains
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 504

 Score =  298 bits (763), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 174/421 (41%), Gaps = 6/421 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PN++ FL+     +    T      +  +I I     I      +  + + V +  R
Sbjct: 82  TNLPNQKYFLNHFGNQISEETTFLEEHFS-FLISISNPDAIISQERNSYFESIYVKVADR 140

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L   D L R+  ++F I  +  ++  K   FA  +R     P    ERE  +  +I
Sbjct: 141 LKKHLNRNDHLFRIESDKFLISSLQIDSETKAEWFAECIRMLFDFPFTYEEREFHLNVNI 200

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVE 716
           G+  +     +    L   + A++ +   G N +  +  +      ++  I+ DL   + 
Sbjct: 201 GYTKFDLKSGSDMNALGILKEALHRSCLIGPNSLFYYDQNAIITTYEKAKIEIDLRKVLN 260

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            +EL + + PII L +     +E L++W+HP+ G +    F+ IAE    IK I  +M+ 
Sbjct: 261 RNELEIHFQPIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSSFIKTIGEWMIW 320

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              +   +         I + +NI+ K L D  +   ++         P+ I L   E  
Sbjct: 321 ETFQYYEN--SILRSENISLSLNISPKQLGDKNIFPLLKEASDYYKIEPNNIILEIVEDS 378

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKR 895
                 +   ++  L+  G    +DDFG   S L  L ++P D +K +   +        
Sbjct: 379 FDFRKSQISKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKMFLFNYFQTST 438

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            A++ S++ + + +  +II + +  E     L  + C++ Q  + + P+      KL++ 
Sbjct: 439 RAVITSMVNLVQAMGKSIIVEGVENETQHNLLKELNCNFGQGYYYSHPMEIELAEKLIQN 498

Query: 956 R 956
           +
Sbjct: 499 K 499


>gi|297538054|ref|YP_003673823.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297257401|gb|ADI29246.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 331

 Score =  298 bits (763), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 8/333 (2%)

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              L   + LI++L+       ++A G++   + +  E    A+ G+GD VWDWDI  D+
Sbjct: 4   SQTLPLNIALIIMLLP------LIAVGFYYIKLRNSEELWKFALEGAGDGVWDWDISNDK 57

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
              +     +LG  +  +   I+ W   +H +D  +    +  ++  +  +  +E RV  
Sbjct: 58  AYFSDRYKEMLGFNNEEVDNNIKEWNNRVHPDDAASLDQAVSDYLSGKTEKYIHEHRVIC 117

Query: 488 ADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            D    W++ R   +  + +G  LR IG   DIT +K     +   A  D L  +PNR  
Sbjct: 118 KDRSIKWVLSRGMIVKRDKHGKPLRMIGTHTDITARKLLETRLENLAHFDALANVPNRTL 177

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F DRL   L  +   +     VM ID+D +K+IND+ G   GD VL  ++R++   ++  
Sbjct: 178 FNDRLKLALSYAKR-EKKMLAVMFIDLDLFKEINDLYGHETGDIVLKKVSRQLVSCVRES 236

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D +AR+ G+ F I+L   +    +   A  + +++A PI + +  + +T SIG A +   
Sbjct: 237 DTVARMGGDEFVILLPIIDEIEDVKLVASKIVEAVAQPIKVAKTHLHITCSIGIAVYPQH 296

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
                 ++ NA++AMY AK+ G N  + F  + 
Sbjct: 297 GKDEKLLVINADMAMYQAKNSGKNQAKFFEEAM 329


>gi|119486826|ref|ZP_01620801.1| hypothetical protein L8106_11267 [Lyngbya sp. PCC 8106]
 gi|119456119|gb|EAW37252.1| hypothetical protein L8106_11267 [Lyngbya sp. PCC 8106]
          Length = 352

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 167/346 (48%), Gaps = 5/346 (1%)

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            +              +A+    +   +  PI  ++  + +  +    + +S      E+
Sbjct: 7   SDSQAYCNSEVTPVQSLAEINQFVSHELRTPITSIQAALKLLKTEKLGTLSSQGQRLLEI 66

Query: 674 -LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
            L N +  +  ++                 ++  ++++L  A++  E  L Y PI+   +
Sbjct: 67  ALNNTDRLIRLSQIFENQSSLQSLAPVEVIEKFRLEKELHQALKQDEFVLFYQPIVCTQN 126

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN-M 791
            +IVG EALI+W HP+ G ++  EF+ +AEE  +I+ I  ++L +  + +  W++Q    
Sbjct: 127 AKIVGFEALIRWQHPRRGWVTPIEFIPLAEETGLIQLIGDWVLRQACQQLEIWQEQFPLD 186

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             + + +N++S  L + +L   +Q +I +T  +P  ++L  +E+  + N   +   L  L
Sbjct: 187 SSLKMSVNLSSLQLSNPQLSLRVQQIIQQTHLNPESLQLEITETAFLENSSIALANLQNL 246

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIET 911
           ++ G+SL +DDFGT  S LS L     D +K + S +      +  ++++I+ +A+++  
Sbjct: 247 KQQGVSLHIDDFGTGYSNLSRLQDWSIDVLKIDNSFVR---TGKWNMIQAILMLAQSLNL 303

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +IA+ +  E D  +L ++GC Y+Q    + P+   +   L+ E+F
Sbjct: 304 EVIAEGVETEQDWVQLQQLGCPYLQGYLFSRPVDSQAATLLIAEQF 349


>gi|146307675|ref|YP_001188140.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145575876|gb|ABP85408.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 770

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/431 (20%), Positives = 188/431 (43%), Gaps = 27/431 (6%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +    L  ++ D LT +PNR   L  L             RP+++++++D +K+IN   
Sbjct: 348 ANTMRQLEASYTDPLTQLPNRARLLLDLQR---------TPRPSLILLNLDAFKEINGFY 398

Query: 584 GIAVGDDVLVSLTRRIGELLK---FPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           G A GD +L  L  ++ + L+       L RL+ + F ++L   ++    A         
Sbjct: 399 GHACGDQMLRHLGAQLLQHLRLEADSARLYRLTADEFAVLLPRLSDEALEARMNELGTFI 458

Query: 641 IAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVESFR-- 696
               ++   +E+   A+ G A  ++ +       +L +A +A+  A+ +  NH+      
Sbjct: 459 QRQRLDWQGQEVGFNATFGAARLSAGEARQGRDSLLASATIALKLARLQQRNHLLYDPAL 518

Query: 697 -VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +       ++    +  A++   L   + PI+      I   E L++        I+  
Sbjct: 519 KIREEYEQNLLWANKVKTALQEDRLLPHFQPILDNHGGSIGKFECLVRMLDDDGQVINPG 578

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A+++ + + I   MLE+         ++    P    IN++ +DL+D +L + ++
Sbjct: 579 RFLGVAKKIRLHRQITRVMLEKCL-------ERFRDLPYEFSINLSYEDLIDPQLSQTIK 631

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +  +   P R+     ES  + N  + R  +  ++ +G  + +DDFGT  S   +L  
Sbjct: 632 EQLQHSGMGP-RLIFEILESEGIDNYSQVRTFIDEVKALGCRIAIDDFGTGYSNFEHLLR 690

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GSL+    S    +A+   I+  A+++    +A+ ++     +++  +G D
Sbjct: 691 LNVDLIKIDGSLIRQLDSDPNALAVTLGIVQFARSLGMQTVAEFVHSAAVQEKVLALGID 750

Query: 934 YIQDSHVASPL 944
           Y Q  H+  P 
Sbjct: 751 YSQGQHIGMPQ 761


>gi|118590456|ref|ZP_01547858.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Stappia aggregata IAM 12614]
 gi|118436919|gb|EAV43558.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) [Stappia aggregata IAM 12614]
          Length = 688

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 107/528 (20%), Positives = 205/528 (38%), Gaps = 27/528 (5%)

Query: 437 ILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQ--- 491
           + G AS S+       L  I  + D       L        +     E R   +      
Sbjct: 165 VFG-ASESVETRAEKLLQLIGSDYDATLLAEALAGLEGELPQTIYIPESRSFRSTGHAAD 223

Query: 492 FHWMIIRIRPMSNS-NGDILR---YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
                +R+ P+  +  G +        I  ++   +++ E     A+ D LTG+ NR++F
Sbjct: 224 RQMCEVRVVPIPGAGQGQLDNGASLAVIRRNVDCPQETAE-NRRLAYLDPLTGLENRRAF 282

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L   L   A +      V+ ID+D++KK+ND+ G   GDD+L+ +   +   L    
Sbjct: 283 TKALKRELTRLAAETETGLAVLYIDLDEFKKVNDLGGHDAGDDMLLRVAACLRLTLGEFG 342

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS- 666
             AR+ G+ F  ++   N    +      +     + + + +R  T+  SIG A      
Sbjct: 343 TAARIGGDEFAGMVPVANEEAALDIAEEILGAFDRIRLEVGDRVFTIGGSIGVAFLDGGI 402

Query: 667 ---KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE-DLCL--AVENSEL 720
              +  ++ +L  A+ A    K  GG  V+   V     + V  +  DL    +   +EL
Sbjct: 403 KLREGDAAALLGLADRACLRGKRFGGRSVQVHSVQPQDFEGVGAELVDLPEPGSFRGNEL 462

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   PI+ L      G E L++    +   +SS  ++  AE    I  ++ + L+++  
Sbjct: 463 TLYAMPIVCLKRARPWGSEILLRLKGDRARGLSSRAWISAAERSGFIAKVDAWTLDKVLD 522

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                 D++      + +N++++ + D    +G+   +S      S++ L  +E   +  
Sbjct: 523 AAERNADRSI-----LTMNVSAESVRDPTFRDGLYHRLSVNPLLASKLCLEIAEKDFLRE 577

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSL-LSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           P   +     + ++G    +DDF       LS L  +  D +K   SL         + A
Sbjct: 578 PASVQAFFRFVNELGCQTAIDDF-AGHWPVLSRLTNLRVDWLKLESSLTQQVVEEPAKAA 636

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           IL  ++  A  +   +IAK +    + + L+ +  +  Q      P  
Sbjct: 637 ILNGLVRAAHELGIKVIAKHVETAEEARLLSELDIEAAQGFFFGRPEP 684


>gi|322830841|ref|YP_004210868.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Rahnella sp. Y9602]
 gi|321166042|gb|ADW71741.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Rahnella sp. Y9602]
          Length = 660

 Score =  298 bits (762), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 183/421 (43%), Gaps = 22/421 (5%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T + N + F+  L   L  +  +      +++I I+  +      G    D  L+S    
Sbjct: 248 TMLNNEEQFMQHLEHRLHCA--EPQKSFHLLLIGIESLRD----DGHV--DCPLISS--- 296

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN--LLEREITVTA 656
           I  +L    +LARLS N F ++             A  + + I  P         +  T 
Sbjct: 297 IMNVLPENCLLARLSYNEFALLAADIPRPFMAMRLARQIMERINAPQESHAGNMSLHPTG 356

Query: 657 SIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCL 713
           SIG   +T    +++ +++ N   A   A  +G N +  F        +  +  + ++  
Sbjct: 357 SIGIVQYTGEFPVSAQQLMVNGRAARVSAYQQGKNQILFFEPELTEKIQKRLLQENEILH 416

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E ++  L   P + +  + +VG EAL++           S+F+++AEE+ ++  +   
Sbjct: 417 AMEQNDFTLFIQPQVNMATDTVVGAEALLRRKMTDGSYGLESDFIVLAEEIGVMSQLGYK 476

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +LE   + +  W+ +    P+ + +N++   +        +++L+S+   +P ++ L  +
Sbjct: 477 ILELGCQILADWQQRG--IPLPLSVNLSGAQVQQRNFLPELRSLLSRYKINPGQLVLEIT 534

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFNGSLMTG 890
           E+  + + +R+ LLL  LR +G+S+ LDDFG   S L Y   L  +P D +K + S ++ 
Sbjct: 535 ETARIDDLDRALLLLSELRAVGVSIELDDFGLGYSGLEYLNRLRTLPIDVIKIDRSFVSV 594

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   ++  +  + + +   ++A+ +  E   + L +      Q    ++PL      
Sbjct: 595 L-PQDEVMVNIVASIGRAMNIQLVAEGVETEEQRQWLLKENIQLGQGYLFSAPLSKTDFE 653

Query: 951 K 951
           +
Sbjct: 654 R 654


>gi|290791074|gb|ADD63299.1| hypothetical protein [uncultured bacterium pAKD4]
          Length = 330

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 117/250 (46%), Gaps = 5/250 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  A  + +L L Y P++ L +  IVG EAL++W HP  G +   +F+ +AE   ++
Sbjct: 11  ATELAQAAASRQLELYYQPLVDLRNNRIVGAEALLRWRHPSLGLLPPGQFIPLAESSGLM 70

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            AI  ++L    R +  W+  A   P  + +N+++  +        +Q +++        
Sbjct: 71  PAIGTWVLCEACRQMRKWQALA-WQPFRLAVNVSASQVG-PMFDAEIQRVLTDADLPAEC 128

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ESV  GNP         LR +G+    DDFGT  S L +L   P  T+K + S 
Sbjct: 129 LEIELTESVAFGNPALF-ATFEALRALGVHFAADDFGTGYSCLQHLKCCPITTLKIDQSF 187

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +       +   I+R++I +A  +   ++A+ +     +  L + GCD +Q    A P+ 
Sbjct: 188 VARLPDDTRDQCIVRAVIQLAHGLGMEVVAEGVETPDSLAWLRQAGCDTVQGFLFAKPMP 247

Query: 946 FNSILKLLKE 955
             +    + +
Sbjct: 248 AATFASFVNQ 257


>gi|150017385|ref|YP_001309639.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903850|gb|ABR34683.1| diguanylate cyclase/phosphodiesterase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 821

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 179/428 (41%), Gaps = 31/428 (7%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+  + +    + D LTG+ NR   ++ L   ++           + ++DI  +  IND 
Sbjct: 413 KEKTDELEKQYYTDKLTGLENRNKLINDL--CIEKYTK-------LTIVDIRSFNDINDF 463

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            G  +GD VL  +++ I    K   +   R++ + F I     +    IA       +  
Sbjct: 464 YGNTIGDKVLKDISKLISWYCKENKLNSYRVNSDIFAIASSDISKEDFIARIQFLQNEIN 523

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                  E +I +T  +G A           + + AE+A+ +AK       + +R     
Sbjct: 524 NQCFVYEEGKIFLTIVMGVAL------EEELLFEKAEMALNYAKKN-KELFQIYREDLNI 576

Query: 702 SDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            + +       + +  A+  + +   + PI+    + I   EALI+        IS   F
Sbjct: 577 YEGIKENIIWTKKIKDAIAENRIVPFFQPIVNNSLKTIEKCEALIRMIDENGKVISPYFF 636

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IA++  + K + + MLE+    +       N     I IN+  +D++++E+   +   
Sbjct: 637 LDIAKKAGLYKELTIIMLEKTFEVL-------NKTNYEISINLLLQDIMNSEIRALIIKK 689

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K   +P +I     ES  + N       +  ++K G  + +DDFGT  S  +YL  + 
Sbjct: 690 LKKVR-NPEKIVFEIVESEGIENFNEVTEFIKEIKKYGSKIAIDDFGTGYSNFNYLMKLN 748

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +GS++    + + A  + ++I+  AK +    IA+ +  E    ++  +  DY 
Sbjct: 749 VDYIKIDGSIIKNVHKDKSAEIVTKTIVLFAKELGIETIAEFVSEEEIYNKIKALNVDYS 808

Query: 936 QDSHVASP 943
           Q  + + P
Sbjct: 809 QGYYFSEP 816


>gi|182420514|ref|ZP_02643175.2| GGDEF/EAL domain protein [Clostridium perfringens NCTC 8239]
 gi|182380401|gb|EDT77880.1| GGDEF/EAL domain protein [Clostridium perfringens NCTC 8239]
          Length = 743

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 105/457 (22%), Positives = 199/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +  +      D LT + +R  FL +L TI        N  
Sbjct: 294 LVMILLVCRDVILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 345

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 346 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKNVFYCRYSGNEFALI-- 403

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 404 --SKLNQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 460

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 461 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 520

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 521 ETLLRWKHDKLGAISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDKG--IKLKCSV 578

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 579 NLSLNTLKSYEKINEILNIYKEYRIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 638

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK ++ T + + 
Sbjct: 639 SIDDFGTGYSSLSQISNLYFDELKIPREFVIDARTPSKLAVIEAISLLAKKLKVTSVIEG 698

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 699 VENYEDFKLFSSLGFDIVQGYYFSKPLTKSEIIDYIK 735


>gi|238792111|ref|ZP_04635747.1| hypothetical protein yinte0001_10160 [Yersinia intermedia ATCC 29909]
 gi|238728742|gb|EEQ20260.1| hypothetical protein yinte0001_10160 [Yersinia intermedia ATCC 29909]
          Length = 1116

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 113/581 (19%), Positives = 234/581 (40%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 533  ILRLIGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCADQEMKITFMNPVAEKMTG 592

Query: 440  LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
             A+    G    N +   +  D       ++  + +R    L     +   D Q++ +  
Sbjct: 593  WANTIALGQPVNNIIKLTNGVDGAEIDNPIEHCLNHRPYSSLNESMVLHHRDGQYYDIQE 652

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    GDI+  + +  D+ E +  +  +  +A  DNLTG+PNR +F ++L   + +
Sbjct: 653  SVAPLKTLEGDIVGAVLVFQDVGESRAMMRKLSHSASHDNLTGLPNRANFENKLKAAIQI 712

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S   +     +  +D+D +K +ND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 713  SVELNQQH-ALAFLDLDYFKAVNDTAGHPAGDALLKELSQLMRQHLRNSDCVARLGGDEF 771

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 772  GLLMLNCTLPHAKAITQTLVSLINGYHFYWEDKLYRIGASAGVTQISSSNNQRSEIMAQA 831

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDE 733
            ++A Y AKH G   V  ++    +      +      VEN    ++L L   P       
Sbjct: 832  DIACYTAKHSGRGQVYLYQPRQKQLLARQHELLSREDVENILNDNQLELQLTPTAPPRTP 891

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +   + + P+  N+S ++F   A    ++  I+ ++ E+    +++        
Sbjct: 892  LSVCFYQISFEVNRPQGLNVSQADFQEAALLYGLLPQIDNWICEQ---LLMTHAQAIKHK 948

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  E  + +  L+ +T+  P  +     ES ++  P      L +L+
Sbjct: 949  GLALAIPLSEVALLKEEFRQSLLTLVQQTVLPPQSLYWMVDESTLLQYPFAIGNFLAKLQ 1008

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            ++G  L + +FG   +    L     D +KFN  L++          ++  I   A+   
Sbjct: 1009 QLGGKLIVKEFGHNLNDFELLADHTIDYIKFNSDLISHIHINQMDEVLVSIINGTAQRAN 1068

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +A      + + +L  +G D      ++SP   + +L 
Sbjct: 1069 IATLAGPAELPLTLNKLITIGVDLADGQTISSPQPLSDLLD 1109



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 103/329 (31%), Gaps = 33/329 (10%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
                Y+S   G  ++++ +      +  A   +AL    +++   Y +       +  +
Sbjct: 141 LAAAWYLSPQSGSFTQVLTVWF----MSEAVGMLALGPVGLLYRRGYFNIATKSKALFDM 196

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
               +  ++  +    Y P     +               +I+  ++        I    
Sbjct: 197 ILMMVVSLSACYLGLIYLPFPFTFVIM------------VLIWTSIRLPRFETFAICFMA 244

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            + I  +  +   T   D  +   A     +L+V++    +   + +     + I     
Sbjct: 245 TLLIALMLNFKLYTIHSDTSLSIQAFSFIPLLMVLIPPHAMAMVMHSFRMEKEHIIESEN 304

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R   A+  S   +         +     +  +LG +  S+      +    H +D     
Sbjct: 305 RFRNAMEYSAIGMALVSPQGQWMQVNKALCKLLGYSQESLLT--LTFQQITHPDDLSADL 362

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +LD     R      E R   +D +  W ++ +  + +     L +I    DI E KK 
Sbjct: 363 KLLDDLYHGRIPSYSMEKRYIRSDGEIVWTLLVVSVVRDHQQQPLYFISQVEDINELKK- 421

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                        T I NR+  ++R+T  
Sbjct: 422 -------------TEIVNRR-LMERITLA 436



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ DI    ++    +  +  +   +     R W  ++H  D + 
Sbjct: 430 MERITLANEAGGIGIWELDIKTQVLSWDKRMYELYHIPFNTPV-DERVWRTHVHPEDINR 488

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 + +  R+   + EFR+   D +   +  +   + + NG+ILR IG   D+TE +
Sbjct: 489 VNREYSAALKQRQ-PYRLEFRLLLPDGEIVHLRNQANMVCDKNGNILRLIGTTLDMTEIR 547

Query: 524 KSLE 527
              E
Sbjct: 548 NLTE 551


>gi|303327222|ref|ZP_07357664.1| putative diguanylate cyclase/phosphodiesterase [Desulfovibrio sp.
           3_1_syn3]
 gi|302863210|gb|EFL86142.1| putative diguanylate cyclase/phosphodiesterase [Desulfovibrio sp.
           3_1_syn3]
          Length = 701

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 181/445 (40%), Gaps = 26/445 (5%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D  E+++ L  +   ++ D LTG+ NR  ++  L  +      ++     ++  DI+ 
Sbjct: 268 VQDHLEKRRLLSSLEDMSYIDKLTGLHNRNKYMAVLEAL-----KNEPSSVGIIFADING 322

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            K +ND      GD ++      +  L      + R+ G+ F ++            F  
Sbjct: 323 LKAVNDTYSHEFGDRLIKRAAEILQGLFSSD--VFRIGGDEFVVLCRGM----ARQVFEE 376

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +R+            + V      ++W+      +  L  AE  MY  K R   + +  
Sbjct: 377 KIRELCRQREEEQGASLAVG-----SAWSGDGRDIARQLAEAEELMYQDKERYRLYRQGN 431

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                    + +++D+          +   P I L+D +++G EAL++        I  S
Sbjct: 432 GQRYSADKALSLQKDIRSGC----FVVHLQPQISLLDGKLIGAEALVRRKDAAGNFIFPS 487

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             +   E+  +++ ++LF+LE     +  ++ +     + I +N++   L +    E ++
Sbjct: 488 RLIRFYEKHGIVRHLDLFVLETACAYLAKFKRKNCF--LPISVNLSHMTLGEENFVENIK 545

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L      +PS + L  +E +     ++   L+ RLR  G S++L +FG++ S LS    
Sbjct: 546 TLCITYDTAPSLLCLEVTEHIRKIGEKQLEELILRLRGEGFSISLSNFGSEYSSLSLAAG 605

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE-TTIIAKDIYGEIDIKELTRMGC 932
           I F  +K + +L+   T+     A+   ++ + + ++   I+A+ I  E     L    C
Sbjct: 606 IDFSEIKLDKTLLRQITKFSNHRAM-ERLLNICRLMDQAKILAEGIESEEQKNLLIEHQC 664

Query: 933 DYIQDSHVASPLGFNSILKLLKERF 957
            Y Q    +  +  +  LK+  ER 
Sbjct: 665 LYGQGYLFSRAIPIDDFLKMYDERN 689


>gi|41407444|ref|NP_960280.1| hypothetical protein MAP1346c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395796|gb|AAS03663.1| hypothetical protein MAP_1346c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 320

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 148/307 (48%), Gaps = 6/307 (1%)

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCL 713
            SIG A+      T+S++L+  + A   AK  GGN+V +FR     +D +   I+  L  
Sbjct: 1   MSIGVAAGAPGDETTSDLLRRVDQATRSAKSSGGNNVATFRPEMSTTDTIRNDIELHLEG 60

Query: 714 AVE--NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            ++  +  L L Y P   +    ++G EAL++W HP  G +    F+ + E + +   + 
Sbjct: 61  MIDGASGALVLHYLPEFDMRTGAVLGTEALLRWQHPTLGLLMPDSFIQVVESINLGAKLG 120

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             ++         W+ +       + IN++   L+   + + + A + +    PS I L 
Sbjct: 121 RLVMHSACAQFGLWQSRGVGKGAVLRINVSPVQLVTAGIVDTVAATLDEFRLDPSTICLE 180

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-- 889
            +ESVV+ + + +R  L  L+ IG+ + +DDFGT  S+L+YL  +P D++K +   +   
Sbjct: 181 ITESVVVQDIDATRQTLFGLKDIGVQIAIDDFGTGYSVLTYLKSLPVDSLKIDKGFVHSV 240

Query: 890 GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +    +AI+RS + +A      ++A+ +      + L  +GC   Q   ++ PL   ++
Sbjct: 241 DTNAGDLAIVRSTLALADAFGLGVVAEGVETVAAAQTLLSLGCHRAQGFLLSRPLDSAAM 300

Query: 950 LKLLKER 956
             LL +R
Sbjct: 301 ESLLAQR 307


>gi|261856403|ref|YP_003263686.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Halothiobacillus neapolitanus c2]
 gi|261836872|gb|ACX96639.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Halothiobacillus neapolitanus c2]
          Length = 822

 Score =  297 bits (761), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 182/437 (41%), Gaps = 33/437 (7%)

Query: 518 DITEQKKSLEGILCNAFQ---DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           DI    ++ E           D  TG+PNR +F+D++         + N    + +I+ID
Sbjct: 405 DIGFAIRAFEYREQLQHHLTTDADTGLPNRVAFIDQM---------NTNSGGLIGLINID 455

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIAD 632
           ++  IN V G+ +GD +L      +    +      L ++ G+ F +   S  +  ++  
Sbjct: 456 RFSDINAVYGVDIGDALLKKYGLWLKARAQGREDIQLYKMGGDEFALYFRSAESLSEVRL 515

Query: 633 FAIAMRKS-IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGG 689
           F + +  +       +   EI +T ++G A            + +A  A+  AK  H+  
Sbjct: 516 FFVDLIAATANTAFMVAGVEIVLTITVGVAHGVDRG------VAHASAAIKQAKLDHQSI 569

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
              +    +  + + +   + +  A+E S +   + PI+    +++   EALI+      
Sbjct: 570 GLFDGLDSTRQQENNIAWYKRIRDAIETSRIVPYFQPIVDNKTQKVTKYEALIRMIDTDG 629

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             IS  +F+ +A++  +   +   M++++               I + IN++++DL++ E
Sbjct: 630 QVISPYQFLDVAKKTKLYSQLTRMMIDKVLDVFKE-------STIPVSINLSTEDLMNQE 682

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E +   +++T      +     ES  + N E     + R +  G    +DDFG+  S 
Sbjct: 683 LSEYLAQRLTETGM-GHLLVFEILESEGVNNYEVVSAFIQRFKAKGCLFAIDDFGSGYSN 741

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             +L  +  D +K +GSL+      R    I++ I   A  +    +A+ +  E    ++
Sbjct: 742 FDHLIKLDMDILKIDGSLIRTLPHDRNSQIIVQHICDFAHEMGIRTVAEFVSNEAIYHQV 801

Query: 928 TRMGCDYIQDSHVASPL 944
             +G D  Q  +   PL
Sbjct: 802 CEIGIDDSQGYYFYPPL 818


>gi|225378478|ref|ZP_03755699.1| hypothetical protein ROSEINA2194_04146 [Roseburia inulinivorans DSM
           16841]
 gi|225209701|gb|EEG92055.1| hypothetical protein ROSEINA2194_04146 [Roseburia inulinivorans DSM
           16841]
          Length = 411

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 164/417 (39%), Gaps = 22/417 (5%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           +F  +L  +L+           + ++D++ +  +N+  G  +GD +L   +R +    K 
Sbjct: 3   AFRIKLVQLLEAEENPQENTYALTMVDVNNFSYVNENFGAEMGDSILKEFSRLLER--KK 60

Query: 606 PDILARLSGNRFGIILISENNSL---KIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                R+  + F ++   ++      ++ +        +         +++         
Sbjct: 61  VMAACRMYSDYFLVLSRGKSQQEIRRRVKEGNEEFEAKLQERYPAGGMKLSAGI-----C 115

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
           + S K +   +L++A LA  +AK         +     ++      I      A++  E 
Sbjct: 116 FLSGKSSFETILESANLARKYAKEHNITSGVVYIEKMRQTRDEQVLIATRFHAAIQRGEF 175

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            +   P  RL +  I G EAL +W   + G +  + F+   E +  IK ++ F+LE++ +
Sbjct: 176 EMFLQPKFRLKENTIYGAEALARWHFGEDGYLQPNRFVPALELMGYIKDLDFFILEQLLK 235

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNE--LCEGMQALISKTLYSPSRIKLSFSESVVM 838
            +  W+         I  N + K   +      + M   + K    PS I++  +ESV+ 
Sbjct: 236 YMTKWKKSGKSL-FTISTNFSRKHFENGGEAFLQRMHETMDKYDIDPSYIEVEVTESVMT 294

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIA 897
              E  +  +  L ++G  + +DDFGT  S LS L  IP + VK + S       + +  
Sbjct: 295 EKLEDLKHCMIELAQMGFRIAIDDFGTGYSSLSVLYEIPANVVKIDKSFTDKVMVDNKGE 354

Query: 898 ILRSI---IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            +  +   I  AK     I+ + I  E   + L   G +Y Q      P+  +   +
Sbjct: 355 FVSQMGKFIRAAKE---EIVVEGIETEEQRQFLESHGFEYGQGYLFDRPIPADEFER 408


>gi|326316994|ref|YP_004234666.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323373830|gb|ADX46099.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 595

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 177/447 (39%), Gaps = 9/447 (2%)

Query: 516 ANDITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             D+     +   + C A + D  T +PNR   L  L  +   +  +  +   + ++  D
Sbjct: 145 LEDLAALVMAQIDLQCAAARVDESTLLPNRTQLLQDLHGLCLAAPGEHRVLVLLELLPHD 204

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
                   +G+   + +     RR+   +     +      R  ++L   ++   +A F 
Sbjct: 205 GIMDAARAIGMQPIEQLTYEAGRRLAFFVGNQSRVYHTGVARLALVLRD-SDQQTVAQFT 263

Query: 635 IAMRKSIAMPINLL-EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHV 692
             +  ++  P+       I     IG A +T     + + L+ A  A+YH    G     
Sbjct: 264 QQLLDTLVAPLPTGSGIVINQRRRIGLAPFTLEPADAVDSLRRANAALYHQPMSGTAVCS 323

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               V         +   +  A+   E  LVY P           LEALI+WDHP+ G +
Sbjct: 324 YDAAVDLSYRRSYELMASIPRALMAGEFRLVYQPQFERASTRYTCLEALIRWDHPQLGPV 383

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  +F+ + E+   I+A+  ++L      I +W D        + IN++ ++L       
Sbjct: 384 SPGDFIPLLEKTTYIQAVTEWVLNTALAQIRAWEDDGLQVD--VAINVSPRNLEQPGFAA 441

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +Q   ++   +PSR+++  +E+ V+     +   +   R +G+ + LDDFGT       
Sbjct: 442 MLQDAFARHRLAPSRLEIECTENAVLTEGP-TLEGIKAARAMGVRVALDDFGTGYCNFGC 500

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  + +K + +L+        A+  +R ++ +   +   ++A+ +       +L  +
Sbjct: 501 LYDLSAEVLKLDQALIRPIGTDARALDVVRGMVQLGHTLGYRLLAEGVETAEVFDQLMEL 560

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERF 957
           GCD +Q  +++ PL        +    
Sbjct: 561 GCDQVQGYYLSRPLPPAEAFAFVHRWN 587


>gi|110678772|ref|YP_681779.1| EAL domain-containing protein [Roseobacter denitrificans OCh 114]
 gi|109454888|gb|ABG31093.1| EAL domain protein [Roseobacter denitrificans OCh 114]
          Length = 515

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 181/424 (42%), Gaps = 9/424 (2%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              +       A    L  TV  I+ID +  + +  G    + +  +   RI  +L+  D
Sbjct: 84  FQDIVAARFREARAGGLISTVFQIEIDDHTSLVERHGQRAAEVISTTSADRIAAVLRDRD 143

Query: 608 ILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            +  L   ++ + L      +       A  ++ ++  PI L    + +T+S+GF   T 
Sbjct: 144 AVTHLDTFKYAVCLEPVRQMDLELCIQLAGRIQAALEEPIALDATAVCITSSVGFCQQTK 203

Query: 666 S-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
               +    L  A  A+  A   G   + ++     +   +   ++E++  A+E  ++  
Sbjct: 204 VLSRSGEAWLAAAGHALREAHLNGPGAIRAYSEKMQQKSEIRAELREEVAQALEKGQIKP 263

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + P I      + G EAL +W+HPK G +    F+   E+  M++ +   M+      +
Sbjct: 264 WFQPQISTDTGLVTGFEALARWNHPKRGMVPPGAFLTAIEQAGMLEKLAEVMIFHAFTAL 323

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W       P  + +N A  +L + +L + +   + +   +P R+ +   E+VV  +P+
Sbjct: 324 KAWDSAGVCVP-QVGVNFAGPELSNPKLVDKIIWELDRFDLAPERLAVEVLETVVANSPD 382

Query: 843 RSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAIL 899
            +    +  L K+G  + LDDFGT  + +S +       +K + S +       ++  ++
Sbjct: 383 DTITRNINGLSKLGCRIDLDDFGTGHASISSIRRFSVSRIKIDRSFVIKADRDPEQQRMI 442

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
            +I+ MA+ +E   +A+ +    +   L ++GCD++Q   +  P+ F+  L  +      
Sbjct: 443 SAILTMAERLEVETLAEGVESVGEHALLAQLGCDHVQGFGIGKPMPFDQTLDWIASHNAK 502

Query: 960 VKNT 963
           ++ T
Sbjct: 503 LQAT 506


>gi|332186121|ref|ZP_08387867.1| EAL domain protein [Sphingomonas sp. S17]
 gi|332013936|gb|EGI55995.1| EAL domain protein [Sphingomonas sp. S17]
          Length = 543

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 173/414 (41%), Gaps = 13/414 (3%)

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL----LKF 605
            +   +      D     ++ + + +   IN   G   G+ +L  +  R+          
Sbjct: 133 EIHRWIADVVDRDKPCIAII-VALSRLDLINAAHGRPAGNMLLRGVEARMQAAAAEAFGD 191

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             I+AR  G  F  ++    +  +    A  +   +A P       I +   +G A    
Sbjct: 192 VAIVARAGGAEF--VMAGVADKDRARGIAETLEALLAAPFQAGAVPIRLGVRLGLAVHQP 249

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYH 725
                S++L  A  A+  A+   G  +      +     + +  DL  A+E  E+ +V+ 
Sbjct: 250 -GEGPSDLLARAGEALGQARASDGAMLRFAHPGNVAPLDL-LGADLHHAIERGEIDIVFQ 307

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P + +    I G+EAL +W HP  G + +      AE   +  A++  + +   +    W
Sbjct: 308 PQVSIKTGRITGVEALARWRHPTLGVLGADPLFAAAERADLGLALSDHIQQIALQRAARW 367

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
               +   + + IN+ + D+      +     ++ + +   R+ +  +E+ ++   +R+ 
Sbjct: 368 PADLSH--LRLSINVTAADVARAGFAQLFLDRVAASGFPIERLTVEITETGLISELDRAA 425

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSII 903
            +L  LR+ G+ + +DDFGT  S L+YL  +P D +K + +L++     E+   ++R +I
Sbjct: 426 TVLDLLRQAGVKVAIDDFGTGYSSLAYLTSLPIDYIKIDRALVSDVDGSERDRIVVRGVI 485

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +A  +   IIA+ +      + L ++GC+  Q    A  L    ++ +++E  
Sbjct: 486 HIAGQLGLGIIAEGVETPEQAQLLGQLGCETYQGFLRAGGLEEEVLVAMVEEEM 539


>gi|310778748|ref|YP_003967081.1| diguanylate phosphodiesterase [Ilyobacter polytropus DSM 2926]
 gi|309748071|gb|ADO82733.1| diguanylate phosphodiesterase [Ilyobacter polytropus DSM 2926]
          Length = 552

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/434 (22%), Positives = 187/434 (43%), Gaps = 27/434 (6%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PN+  F +           D      + VI  ++Y K+ + LGI    D +  ++
Sbjct: 135 PITKLPNKNYFEN--------MTRDYYFDERIAVIKFEEYHKMIENLGIDYATDFINKIS 186

Query: 597 RRIGELLKFPDI------LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
               ++    +       +  L  ++F II                  K+I       E+
Sbjct: 187 DIFVKIFNEKNKNNKEQNVFHLEEDKFAIIFSDSEMKNNFKVVYKTFYKAIK------EK 240

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKE 709
            +T   S        +   +  +L+ AE+A   A+     + + S  +S   +    +  
Sbjct: 241 NVTYFPSYFIGISPRTGSNTE-VLQKAEIARRSARKNLKFYEIYSPELSEQLNKNFDLSL 299

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+ N E +L YHP I L   ++ G+EALI+W HP+ G I    F+   E+  MI  
Sbjct: 300 EIPRAINNREFFLTYHPKINLKSGKVEGVEALIRWLHPEKGLIPPDAFIPYIEKTSMINT 359

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++++    +I S   +         +NI  K L + ++   ++A   +   S  +++
Sbjct: 360 VTEWVIKTAFFEIKSMEKENINTNF--SVNIPLKILENPKIIRYIEAY-KRNPLSIYKLE 416

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L   E   + N +++   +  L+K+GI+ +LDD+GT  S LSY+  +PFD +K +   + 
Sbjct: 417 LEILERDNVENFKKTASAMKDLKKLGINFSLDDYGTGYSTLSYMQQLPFDRIKIDRMFIK 476

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E    +++S I +   +   ++A+ +     ++ L  MGCDY Q  H A P+ + 
Sbjct: 477 DIENDESMRELVQSTIDIGHTLGMEVVAEGVETIKAVEILQNMGCDYAQGYHYAKPMTYP 536

Query: 948 SILKLLKERFPLVK 961
             ++  K+     K
Sbjct: 537 EFIRWYKDYNSTEK 550


>gi|298489943|ref|YP_003720120.1| response regulator receiver modulated diguanylate phosphodiesterase
           ['Nostoc azollae' 0708]
 gi|298231861|gb|ADI62997.1| response regulator receiver modulated diguanylate phosphodiesterase
           ['Nostoc azollae' 0708]
          Length = 403

 Score =  297 bits (760), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 143/308 (46%), Gaps = 6/308 (1%)

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
           +      +G   + +   T SE+L   +  +    +   + +    V        ++++ 
Sbjct: 89  DFRQGMDLGADDYLTKPFTRSELLSAIKNKLEKFANLKKHLLVQTTVQKLTPRMQLLEKS 148

Query: 711 LCLAVEN---SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           L   ++        + Y PI+ +   +I   E+L++WD  + G IS SEF+ +AE   +I
Sbjct: 149 LYRVIKEYDFKGFEIYYQPIMDINTGKITSAESLLRWDSDELGQISPSEFIPLAESNGLI 208

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ ++L+ + + I +W D   +    I IN+++ +     L   +  LI      PS 
Sbjct: 209 IPIDNWVLKNVCKKIKNWYDA-GISGFTITINLSAVEFNQPGLISKIIGLIDTNQLDPSS 267

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ES ++ + + +   +  LR +GI + +DDFGT  S L+YL   P +T+K +   
Sbjct: 268 LEIELTESKIIEDVQSAINTMNELRLLGIKIAIDDFGTGQSSLNYLQNFPVNTIKIDRDF 327

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   +    +  I +S+I MA+ +   IIA+ +  E ++  L +  CD IQ    +  L 
Sbjct: 328 IHDISNNYSKSVITKSMIKMAQELNLRIIAEGVETEAELLFLKQNRCDAIQGFLFSPALP 387

Query: 946 FNSILKLL 953
                KL+
Sbjct: 388 AVEFEKLV 395


>gi|310778750|ref|YP_003967083.1| diguanylate cyclase/phosphodiesterase [Ilyobacter polytropus DSM
           2926]
 gi|309748073|gb|ADO82735.1| diguanylate cyclase/phosphodiesterase [Ilyobacter polytropus DSM
           2926]
          Length = 546

 Score =  297 bits (760), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 93/435 (21%), Positives = 194/435 (44%), Gaps = 23/435 (5%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +  ++F   +TG+PNR+ F +           D++L PT+++I++  Y K  +  G  
Sbjct: 125 KRVEKSSFYSQITGMPNRKYFEN--------MDFDESLSPTLILIELKNYHKAAEDFGYN 176

Query: 587 VGDDVLVSLTRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              D++ +  +   + +K  D+  L       F ++L   +    I  F       +  P
Sbjct: 177 FYTDMITAFNQSFKQFMKNNDLMELFHFDTGTFAVLLYKTDPKKYIDLF----LDFLKNP 232

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY-HAKHRGGNHVESFRVSSFRSD 703
           + + E +   +A+IG +++      + + ++ A  A    AK+     + +  +    S 
Sbjct: 233 LKIREIDFYTSATIGVSTY---GGNTLKFIREAYFAKDLAAKNLKHYLIFTPEMERESSA 289

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +  D+  A+  +E +L Y P I L   ++  +EALI+W+HP+ G +  ++F+   E 
Sbjct: 290 NFNLVNDIPKALSRNEFFLCYQPKIDLFTNQVSSIEALIRWNHPRLGLVPPNDFIEYIET 349

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  I  +++++    II            I +N+  K L   +  + +   +  +  
Sbjct: 350 TTFIDDITRWVIKKSLDSIILMEKINIQMD--IAVNVPLKLLEHEKFFDFLSD-LKSSGK 406

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
             ++I+    E  ++ + E +  L+ + + +GI   LDDFGT  S LSYL  +P D +K 
Sbjct: 407 PINKIQFEIIERDLVKDFEATSSLILKYKDLGIRFALDDFGTGYSTLSYLQQLPLDKIKI 466

Query: 884 NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +      +K   I++S I +A  +   ++A+ +     +  L +MGCD+ Q  +  
Sbjct: 467 DRLFIKNLKTDKKDSDIVKSSIDIAHILNLKVVAEGVEDRKSLDILKKMGCDFAQGYYFT 526

Query: 942 SPLGFNSILKLLKER 956
            P+ +   +   K  
Sbjct: 527 KPVVYEKFIDWYKNY 541


>gi|168210558|ref|ZP_02636183.1| GGDEF/EAL domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711375|gb|EDT23557.1| GGDEF/EAL domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 775

 Score =  297 bits (760), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 200/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +  +      D LT + +R  FL +L TI        N  
Sbjct: 326 LVMILLVCRDVILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKNVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLDQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS S+F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 553 ETLLRWKHDKLGEISPSKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDKG--IKLKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKEYKIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK ++ T + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVIDARTPSKLAVIEAISILAKKLKVTSVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 731 VENYEDFKLFSSLGFDIVQGYYFSKPLTKSEIIDYIK 767


>gi|149374538|ref|ZP_01892312.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
 gi|149361241|gb|EDM49691.1| response regulator receiver domain protein (CheY-like)
           [Marinobacter algicola DG893]
          Length = 636

 Score =  297 bits (760), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 98/699 (14%), Positives = 201/699 (28%), Gaps = 95/699 (13%)

Query: 3   LSNSLRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQV 62
               L+    +   + +LF L  +  +    P       + L+L      +        +
Sbjct: 6   PGVFLKKSLMQILFVTMLFALPALVSAG---PAVWDGYSKRLELPRYVEYWEEPDGAVSL 62

Query: 63  FTAADIDGISRRIEVSA---SSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFS 119
            +   +     +                W    + N         + + +  L     + 
Sbjct: 63  NSVRQLPEHEWQPNGKDSVSLGYGDEVYWFRVNIRNPGSGTASLFLEIGYPVLDHVEVYL 122

Query: 120 PDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNLPQIYLWE 177
            + G      +   +     R     + +   +++    ++  + +   +     + LW+
Sbjct: 123 LEDGELVERQLLGDKQPFYQRPIYHRNFLVPFSLSGDNELSIYLRVDTTSSMQVPLTLWD 182

Query: 178 PNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVV-LGYISIDF 236
            + +     + +L+ GI  G+  ++ ++    YM       +        + L   S+  
Sbjct: 183 QDAFYVAEQARSLFEGIYYGIVLVMILYNLFVYMAVGERSFLHYVGYIAAMPLFLASLHG 242

Query: 237 GFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLH-WNRWHAKVGYITFSGIACIAI 295
                L    +             +      F   +L+     H  +  +T   +    +
Sbjct: 243 VAFQYLWPEATWWNDQAITVFLNLVVLFGGTFSLHFLNVTPANHPFLNRLTVGIVVMAGV 302

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG-MKGYERAVLLIPAWILIFIWFIGL 354
                   P     +  I LA +       +     +K    A     A           
Sbjct: 303 TAMAGMLVPYRLLILPTILLAFLGCTTMLVLSIVRCLKKDPAARYYALA----------- 351

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
                           L GG+VL   L  FTV+   L T   +Q              GS
Sbjct: 352 ------------WVFMLFGGIVLA--LSKFTVLPRNLLTENATQV-------------GS 384

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              V    +                                ++   +  F       +  
Sbjct: 385 AIGVILLSVA---------------------------LADRLNREKKSAFEAQQRLLLEE 417

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R+ R+  E  +R        +      +        R      D+   +     +   + 
Sbjct: 418 RKARMAQEKSLR--------IQQEANTLLEQ-----RVQERTRDL---ESLNNQLRELSA 461

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR  F    ++ +  +        +++++DID +KK ND  G  VGDD L  
Sbjct: 462 TDALTGLKNRGHFDRTFSSAVVKAYRFSQP-LSLLLLDIDHFKKFNDTHGHLVGDDCLQM 520

Query: 595 LTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +   I E + +  D+ AR  G  F ++L        +        +       + +  + 
Sbjct: 521 VANCIREYVTRPQDLAARYGGEEFVVLLPDTPREGALRVAEKIRSRIEETGFRVSDEVLH 580

Query: 654 VTASIG-FASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           +T SIG  A   S    + ++   A+ A+Y AK RG N 
Sbjct: 581 LTVSIGLCAVCPSQADATKDIFSWADEALYEAKGRGRNQ 619


>gi|182625250|ref|ZP_02953025.1| GGDEF/EAL domain protein [Clostridium perfringens D str. JGS1721]
 gi|177909562|gb|EDT72002.1| GGDEF/EAL domain protein [Clostridium perfringens D str. JGS1721]
          Length = 775

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 104/457 (22%), Positives = 199/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +  +      D LT + +R  FL +L T+        N  
Sbjct: 326 LVMILLVCRDVILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLETM--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKNVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLDQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 553 ETLLRWKHDKLGEISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDKG--IKLKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKEYKIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK ++ T + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVIDARTPSKLAVIEAISILAKKLKVTSVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 731 VENYEDFKLFSSLGFDIVQGYYFSKPLTKSEIIDYIK 767


>gi|110800404|ref|YP_694700.1| GGDEF/EAL domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110675051|gb|ABG84038.1| GGDEF/EAL domain protein [Clostridium perfringens ATCC 13124]
          Length = 775

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 200/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +  +      D LT + +R  FL +L TI        N  
Sbjct: 326 LVMILLVCRDVILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKNVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLDQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS S+F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 553 ETLLRWKHDKLGEISPSKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDKG--IKLKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKEYKIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK ++ T + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVIDARTPSKLAVIEAISILAKKLKVTSVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 731 VENYEDFKLFSSLGFDIVQGYYFSKPLTKSEIIDYIK 767


>gi|256371615|ref|YP_003109439.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008199|gb|ACU53766.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 1064

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 94/430 (21%), Positives = 184/430 (42%), Gaps = 22/430 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +   +     A +D LTG+PNR++FL+           D  +   + ++D+D +K+ ND
Sbjct: 514 LRAERDAQRTVALRDALTGLPNRRAFLEEAEARCRRVEED-GVGLALGILDLDGFKEWND 572

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           V   + GD +L  +   +   L     +ARL G+ FG++     +S+ +   + A+  + 
Sbjct: 573 VYRHSEGDRILAEVGASL-AALPPELYVARLGGDEFGLLAR--LDSMDLGTLSQAVHAAA 629

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A+P         ++AS+G+A W    +    +L +A+ AMYHAK +GG     F     R
Sbjct: 630 AVPTPGG----PLSASLGWALWGPVGVDVETLLAHADEAMYHAKSQGGGRTRIFEDEMAR 685

Query: 702 --SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  ++  L  A+   ++   Y P + L+   + G+E L +W       + +  FM 
Sbjct: 686 LADRRHRLRTKLASAIGTDQVRFWYQPQVDLVAGRLAGVELLARWYDGA-EVVPADAFMD 744

Query: 760 IAEE-LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
           + E    + + ++L  LE     +             + +NIA++ LL       +  +I
Sbjct: 745 VVERDAYLARRLDLDALEHACTLLAERPSLPA-----VAVNIAARHLLTPTFAADVARVI 799

Query: 819 SKTLYSPSRIKLSFSE-SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                S  R+ L  +E   +  +   +   L  +R +G  + +DDFG   + ++Y+  +P
Sbjct: 800 RTA--STERLVLEITEAHSLGDDLASAVSRLEAIRALGARIAIDDFGRGWASMAYVHSLP 857

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKN--IETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + SL+        +   S+  +A        ++ + I    D+     +G  ++
Sbjct: 858 IDQLKVDRSLVASLATDPRSFASSLSALALGSYAGVEVVGEGIETTEDLAMWRAIGGRFV 917

Query: 936 QDSHVASPLG 945
           Q   +  P  
Sbjct: 918 QGYGLGRPQP 927


>gi|228986886|ref|ZP_04147013.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772835|gb|EEM21274.1| Sensory box/GGDEF [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 282

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 144/274 (52%), Gaps = 3/274 (1%)

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            AK      +    ++     R+ +++DL  A++N EL+L+Y P +     +I+G EALI
Sbjct: 5   KAKELNAVSIYDDVIAKKIERRLRLEKDLPNAIQNEELFLLYQPQVNSESNKIIGAEALI 64

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W+HP+ G IS  EF+ IAEE   I  I  + LE+    +  W        + I +N+++
Sbjct: 65  RWNHPELGVISPYEFIPIAEETLQIIPIGKWTLEQACEQMKRWHS-LGYSHLKIGVNLSA 123

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           K+    +  + + + ++ T    S + L  +E + M +   + + L  L+ +GI +++DD
Sbjct: 124 KEFEQEDFVKSISSTLANTGLPASSLDLELTERIAMMDERETLIKLRTLKSLGIHISIDD 183

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L+YL   P DT+K     +  + + +  + I+++II +A  +  ++IA+ +  
Sbjct: 184 FGTGYSSLAYLPLYPIDTLKIPREFITMSETCDDGMEIIKTIITLANTLGMSVIAEGVET 243

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  +  L +  C +IQ  + + P+  ++  +LL+
Sbjct: 244 KEHVSFLQKNKCQFIQGYYYSKPIHTHAFTELLE 277


>gi|326796475|ref|YP_004314295.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326547239|gb|ADZ92459.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 556

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 187/426 (43%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D ++G+ N+Q  ++ L          D      +   + KY  +    G  V      S 
Sbjct: 139 DPISGLKNKQGLMEDLNA--------DEAVSAAIGFKLSKYSTVVSSYGQEVASHYYSSQ 190

Query: 596 TRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
            + +  L+         + R S +   I+  ++ +S  +   A  +R  ++    L E  
Sbjct: 191 VKTLKSLVDLAYTQVLGIYRPS-DESIILTFTDVDSETLIQIADQLRSKLSGRKQLEEGA 249

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
           +      G A      ++S+E+++    ++  A       + +   +S    R+ I+ DL
Sbjct: 250 VNEEVLAG-AVLELGSLSSTEIIQRLTSSLAQASTSKPVALYNSDHASQALRRIRIEADL 308

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++   L + + P + +  ++IV  EAL++W+HP+ G IS +EF+ IAEE  MI A+ 
Sbjct: 309 KEAIDQQALNVHFQPQVNVSSKKIVAAEALVRWNHPEMGMISPAEFIPIAEESGMIVALG 368

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +  +  + + S         + + INI S   L     E     + K   +   +KL 
Sbjct: 369 EVVFVKTLKTLKSLDALG--CSVPVSINIGSDHFLMGNFVEWCVNTVEKEQVAIQFVKLE 426

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES ++ + E    +L RLR+ G  + LDDFGT  S LSYL  +P D +K +   +   
Sbjct: 427 LTESALLSSLEDGVRVLDRLREQGFKIALDDFGTGYSSLSYLLELPLDQLKIDKQFVDML 486

Query: 892 TEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           ++ + +  +L  ++ MA  +E  ++ + +  E  +  +     D IQ  +   PL  +  
Sbjct: 487 SKDKRSEKLLSHLVGMAHELELQVVVEGVESEFQVAFMEHAEADLIQGYYYYKPLPQDEF 546

Query: 950 LKLLKE 955
           +++L E
Sbjct: 547 IRVLSE 552


>gi|312198096|ref|YP_004018157.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311229432|gb|ADP82287.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 778

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 182/438 (41%), Gaps = 17/438 (3%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LTG+ NR  F DRL   L      ++    ++  D+D +K++ND LG 
Sbjct: 344 RQELRYQALHDPLTGLANRALFADRLQHALAF---RESRPFALVYCDLDDFKRVNDTLGH 400

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD +L +   R+   ++  D +ARL G+ F I+L   +   + A     + ++I  P 
Sbjct: 401 AAGDSLLTTTAARLRAGVRPGDTIARLGGDEFAILLGDGHGDPEAA--CQRLAETIRAPT 458

Query: 646 NLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHVESFR-----VSS 699
            L      V AS+G     +     +  +L+ A+LAMY AK  G   +  +R       S
Sbjct: 459 MLAGHPQPVGASLGLVIADAHSPPAADALLREADLAMYAAKREGKGGLVVYRPDLSTHES 518

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +   L        + + Y P++ L    +  L+A+  W H             
Sbjct: 519 APQTRAALAYALRGDERYGTITVHYQPVVDLRTGGVSALDAVPHWSHRLLAQSPPDLLAH 578

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +A+E  +   +   +L R+ RD+ +   +    P F+ + +  +DL        +  L++
Sbjct: 579 LADEAGLTVPLVGLVLRRVCRDVAAQNPRLRGRPAFVSVPV-RRDLEGTS-VAEVADLLA 636

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                P  I L  SE+  + + + +  LL RL   GI L LD  G + S  +    +P +
Sbjct: 637 HHDLPPQTIILRLSETCGVSDLDAAAPLLRRLAGRGIRLALDGVGGRASTFAAWRTLPIE 696

Query: 880 TVKFNGSLMT-GSTE---KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            ++ + +L    S+    +   I  +++  A +++ T+    I      +EL   GC   
Sbjct: 697 IIRLDHTLTDVDSSPGAHRTRRIRDAVLAAAAHLDLTVATTGIGNHAQARELAAAGCHLG 756

Query: 936 QDSHVASPLGFNSILKLL 953
              +   P   +   + L
Sbjct: 757 TGPYYGPPRPLDEASQAL 774


>gi|238753041|ref|ZP_04614497.1| hypothetical protein yrohd0001_22590 [Yersinia rohdei ATCC 43380]
 gi|238708739|gb|EEQ01001.1| hypothetical protein yrohd0001_22590 [Yersinia rohdei ATCC 43380]
          Length = 1094

 Score =  296 bits (759), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/569 (18%), Positives = 223/569 (39%), Gaps = 21/569 (3%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 508  ILRVIGTTLDMTEIINLTEALHEEKERLHITLDSIGEAVVCTDQEMKITFMNPVAEKMTG 567

Query: 440  LASGSMHGPIRNWLPYI-----HINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFH 493
             A+    G   N++  +                ++  + +R    L     +   D Q++
Sbjct: 568  WANTIALGQPINYIIKLTNGVNGPE----LDNPIEYCLSHRPYSSLNASMVLHHRDGQYY 623

Query: 494  WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
             +     P+    GD++  + +  D++E +  +  +  +A  DNLTG+PNR +F ++L  
Sbjct: 624  DIQESAAPLKTLEGDVVGAVLVFQDVSESRAMMRKLSHSASHDNLTGLPNRTNFENKLKV 683

Query: 554  ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
             +  S   +     +  +D+D +K IND  G   GD +L  L++ + + L+  D +ARL 
Sbjct: 684  AIQQSIEQNQQH-ALAFLDLDYFKAINDTAGHPAGDALLKELSQLMRQHLRNSDCVARLG 742

Query: 614  GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
            G+ FG+++++       A     + +         ++   + AS G    +SS    SE+
Sbjct: 743  GDEFGLLMLNCTLPHAKAITQSLVSRINGYQFYWEDKLYRIGASAGVTHISSSNSQRSEL 802

Query: 674  LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIR 729
            +  A++A Y AKH G   V  ++    +      +    ED+   + N++L L   P   
Sbjct: 803  MAQADIACYTAKHSGRGQVYLYQPRQKQLLARQHELLSREDVAGILSNNQLVLQLTPTAP 862

Query: 730  LMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                  +   +   + + P    +S S F   A    +   ++ ++ E++  +     + 
Sbjct: 863  AKTPLSVCFYQVSFEINRPHSMRVSQSAFEEAAALYNLQTPVDTWVCEQLLTEQA---EA 919

Query: 789  ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
             +   + + I ++   LL  +  + +  L+  T  SP  +     ES ++  P      L
Sbjct: 920  IHHQGLMLAIPLSEAALLHEDFRQSLLCLLQTTPLSPQNLYWMVDESTLLQYPFAIGNFL 979

Query: 849  GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMA 906
             +L+++G  L + +FG        L     D +KFN  L+           ++  I   A
Sbjct: 980  AKLQQLGCKLIVKEFGHNLHDFELLAEHSIDYLKFNSELIAHIHINQMDEVLVSIINGTA 1039

Query: 907  KNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            +      +A        + +L  +G D +
Sbjct: 1040 QRANIATLAGPAAMPATLSKLIAIGVDLV 1068



 Score = 91.2 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 109/350 (31%), Gaps = 34/350 (9%)

Query: 206 LTIFYMVNRSSMLIPTFAMA-WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSS 264
               ++      ++    ++      Y+S   G  ++++ +      +  A   +AL   
Sbjct: 95  NLFSWLKFLICSVVAVPLLSGLAAAWYLSPQNGNFTQVLTVWF----MSEAIGMLALGPV 150

Query: 265 LIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTY 324
            +++   Y +       +  + +  I  +A  +    Y P     I              
Sbjct: 151 GLLYRRGYFNITTKTKALFDMMWMLILSLAACYIGLIYLPFPFTFIIM------------ 198

Query: 325 FIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGF 384
            +I+  ++        I     + I  +  +   T   D  +   A     +L+V++   
Sbjct: 199 ALIWAAIQLPRLETFTICFLSTLLIAMMINFNLFTLPDDPKMSVQAFSFIPLLMVLIPPH 258

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            +   + +     + I     R   A+  S   +         +     +  +LG    +
Sbjct: 259 AMAMVMHSFRMEKEHIIESENRFRNAMEYSAIGMALVSPEGQWLQVNKALCKLLGYNQET 318

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +     N+    H +D      +LD            E R   +D +  W ++ +  + +
Sbjct: 319 LLT--LNFQQITHPDDLSADLKLLDDLYDGTIPSYSMEKRYIRSDGEVVWTLLVVSVVRD 376

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
                L +I    DI + KK              T I NR+  ++R+T  
Sbjct: 377 HEQQPLYFIAQVEDINDLKK--------------TEIINRR-LMERITLA 411



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ DI + +++    +  +  +   +       W  YIH  D +N
Sbjct: 405 MERITLANEAGGIGIWELDIKKQQISWDKRMYELYHVPFNTPVNENI-WQQYIHPEDFNN 463

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 + +  R+   + EFR++        +      + +  G+ILR IG   D+TE  
Sbjct: 464 VIFEYQAALNQRQ-PFRLEFRLQLPSGDIIHLRNNANIVCDKQGNILRVIGTTLDMTEII 522

Query: 524 KSLE 527
              E
Sbjct: 523 NLTE 526


>gi|257459114|ref|ZP_05624233.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter gracilis RM3268]
 gi|257443499|gb|EEV18623.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
            sensor [Campylobacter gracilis RM3268]
          Length = 1355

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/554 (21%), Positives = 210/554 (37%), Gaps = 38/554 (6%)

Query: 414  SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
            S + +   D     +        I G +     G I N+          +    +   + 
Sbjct: 719  SLEAILITDESGRVLRANNAFYEITGYSESQTIGKIPNFFAPT--EGGADVMERIRKNLV 776

Query: 474  YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             ++   + E             +     + +       +I +  +I++ K+    +   A
Sbjct: 777  GKQTSYKDEIYGLKRGGGTFPALFTAIAIKDDFSLTSNFILMFTEISQIKQKESELAKIA 836

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
              D LTG+PNR  F+         S  +  L   V+ ID D +K IND  G  VGD  L 
Sbjct: 837  HHDALTGLPNRVYFMKAAQRFTANSGENSKL-MAVLFIDFDGFKAINDTYGHEVGDMFLQ 895

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++++ +  LL+  DILARL G+ FG I+    +          +     M  NL   EI+
Sbjct: 896  AISKAMSGLLRKGDILARLGGDEFGAIIGDLQSKDAAHVLLDRLLGISKMKFNLKGNEIS 955

Query: 654  VTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
             + S+G A +  S+      +L  A+ AMY AK  G N    F  +         +E + 
Sbjct: 956  ASISVGAAFYDGSEKIDFPGLLSRADRAMYRAKTSGKNRYCIFERAEADGPS---EEGIA 1012

Query: 713  LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             A+E  E +++Y PII     +I G E L++WD  K G ++  +F  I  E      I+ 
Sbjct: 1013 AAIEEGEFFVLYQPIISGA--QIYGYELLLRWDRGKRGILAPQDFAQILSEPRFELPISK 1070

Query: 773  FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            F   ++                   IN++   L ++E  + +   +     +   +    
Sbjct: 1071 FAFSKMMEFNAQTGAN-------CSINVSLAVLTNDEFYDFVAHSLRDRANAKGELMFEI 1123

Query: 833  S---ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS----LLSYLGYIPFDTVKFNG 885
            +   E     N +      GR   +GI   L       S     + +L   PFD VK + 
Sbjct: 1124 TDFSE----QNFKEFAPARGRYADLGIKFAL------NSANKNNIPFLNAQPFDIVKIDR 1173

Query: 886  SLMTGSTEKRIAILRSIIPMA----KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
             L     +K+ AI R+++ +     +     + A+ +   + ++ L  +  +Y+Q + +A
Sbjct: 1174 ELCLDIGKKKNAI-RTMVEITGKLKREFGFALGAQGVENALSLRLLNNLKFNYLQGNFIA 1232

Query: 942  SPLGFNSILKLLKE 955
              L    I   +  
Sbjct: 1233 KALDRKEIDAFIAR 1246



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 4/151 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q++       +G+  D +     +          D+    ++   +   IL      ++
Sbjct: 565 FQNIDDDVKAIRGLQEDLDFYRTVIETRNFCTCLIDLDAQTLSFDKNYFKILKYRGKRLN 624

Query: 447 G--PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  +   I+  D +NF  ++       R     EFR+R A N + W+ ++   ++ 
Sbjct: 625 TAMSFGEFSYEIYFADLENFNKMIRECTAGLRSDFSCEFRLRNAANAYTWISMQGY-VTE 683

Query: 505 SNGDILRYI-GIANDITEQKKSLEGILCNAF 534
            +G   R +     DI+ +K++   +  NA 
Sbjct: 684 KHGSRSRLVKTTLEDISSRKQTELELNLNAN 714


>gi|307719315|ref|YP_003874847.1| hypothetical protein STHERM_c16340 [Spirochaeta thermophila DSM
           6192]
 gi|306533040|gb|ADN02574.1| hypothetical protein STHERM_c16340 [Spirochaeta thermophila DSM
           6192]
          Length = 633

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/410 (23%), Positives = 179/410 (43%), Gaps = 8/410 (1%)

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R    L  ++  +     V+ +      ++  V G  V   V+     RI  L++  D +
Sbjct: 222 RFQEYL--ASRGEGAVCAVIHLAAPSLWEVGQVYGRGVQRQVIARAMERIRSLMRPSDEV 279

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
                +RF ++        K+      +  +   P  +  R   V    G A + S    
Sbjct: 280 WTAGEDRFFLVAGGMGERGKVVGLLRRVLSACNRPYVVEGRRFDVVWVAGAAVYPSDSRH 339

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE-DLCLAVENSELYLVYHPII 728
            + +++ AELA+ HA   G ++         R   ++++  +L  A+E +EL L Y P +
Sbjct: 340 PARVVEVAELALEHALKEGRSYSLHEEGWEQRFRSLVVRRHELHRALERNELVLFYQPFV 399

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
              +  +VG EAL++W+HP  G +S  EF+ + EE  +I  +  +++  +       R+Q
Sbjct: 400 D-KEGTVVGAEALLRWNHPDEGILSPGEFVSLLEEKSLILPLGKWVVAEVCGLWARMREQ 458

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
             + P F+ +N+A   L + E        ++        +    +E   +   E    + 
Sbjct: 459 GIVLP-FLSLNVAPPLLREGEFVSFCADKMAVYDIPRDVLMFELTERSFLSLAEE-EGVF 516

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMA 906
             LR +GISL +DDFGT  S  +YL       +K + S + G  E+R   AI++S++ +A
Sbjct: 517 ASLRGMGISLCVDDFGTGYSSFNYLKRCWVRAIKLDHSFVAGVPERREDVAIVQSVVRLA 576

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++   +IA+ +     +  L+  GC   Q  + A P+     L +++ER
Sbjct: 577 GDLGIVVIAEGVERREQVAFLSAQGCAVFQGFYYARPMPEEQFLLVVQER 626


>gi|312197836|ref|YP_004017897.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311229172|gb|ADP82027.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 828

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 184/461 (39%), Gaps = 23/461 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E + +   +   AF D LTG+PNR  F   L   +           TVM +D+D +K +N
Sbjct: 366 EVQAAQVRLRYQAFHDLLTGLPNRAYFTGELERAVGE-HRSVGRPVTVMFVDLDDFKSVN 424

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK----IADFAIA 636
           D LG A GDD+L  +  R+   ++  D++ARL G+ F ++L   + +             
Sbjct: 425 DTLGHAAGDDLLAGVADRLRGAVRGNDLVARLGGDEFAVLLAEADQACDPAITADRVGQK 484

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYHAKHRGGNHVES 694
           +  ++    +L      V AS+G A   S      + ++L  A+ AMY AK      +  
Sbjct: 485 VLAAMGPAFSLHGHRRNVHASVGLAMADSEAPVEVAEQLLHRADSAMYAAKRGAKGGLVR 544

Query: 695 FRVSSFRSDRVMIKED-----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             +    + R+    D     L        L + Y PI  L D  IV +EA +       
Sbjct: 545 DHLHRPAAVRIREVSDSAVATLASGATMGSLAVCYQPIRCLEDGRIVAVEASLCRAGSCD 604

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
               + + +  AE       ++  +L+R   D+   R Q    P+ + +N+  + + D  
Sbjct: 605 LAPPAPDLLTAAERDGSTDELHNRLLDRACHDLRVVR-QRLRAPVRLHVNVPPERVDDEA 663

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + ++  + +   +   + L  + +  + +   +R  L +L ++G+ + LDD G   S 
Sbjct: 664 LADLVRESLRRHHLNAHALVLEIASAARVPDLATARPYLEQLARMGVRIALDDVGADDSS 723

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRI-------AILRSIIPMAKNIETTIIAKDIYGEI 922
           L  L   P   +K    L                A+  ++I +A     T+ A  I  E 
Sbjct: 724 LGALHKWPLTLIKLTPELSADLLAADQPAERRLRAVRSALIGIATATGMTVAADGIVTEP 783

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +  L   GC+  Q   +  P     + +L +   P+   +
Sbjct: 784 QLAALRTAGCELGQGDLLGPPQT---LPRLARTASPVTTTS 821


>gi|332162598|ref|YP_004299175.1| putative sensor protein [Yersinia enterocolitica subsp. palearctica
            105.5R(r)]
 gi|325666828|gb|ADZ43472.1| putative sensor protein [Yersinia enterocolitica subsp. palearctica
            105.5R(r)]
          Length = 1116

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/581 (18%), Positives = 231/581 (39%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 533  ILRLIGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCTDQEMKITFMNPVAEKMTG 592

Query: 440  LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
             A+    G   ++ +   +  D       ++  + +R    L     +   D Q++ +  
Sbjct: 593  WANTIALGQPIQHIIKLTNGVDGPEIDNPIEHCLTHRPHSSLNESIVLHHRDGQYYDIQE 652

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    G ++  + +  D+ E +  +  +  +A  DNLTG+PNR +F ++L   +  
Sbjct: 653  SVAPLKTLEGTVVGAVLVFQDVGESRAMMRKLSHSASHDNLTGLPNRANFENKLKAAIQK 712

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S  D + +  +  +D+D +K +ND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 713  S-IDFDQQHALAFLDLDYFKAVNDTAGHPAGDALLKELSQLMRQHLRNSDCVARLGGDEF 771

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 772  GLLMLNCTLPHAEAITQSLVSMINGYHFYWEDKLYRIGASAGVTQISSSNSQRSEIMAQA 831

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE 733
            ++A Y AKH G   V  ++    +      +    ED+   +  ++L L   P       
Sbjct: 832  DIACYTAKHSGRGQVYLYQPRQKQLLARQHELLSREDVESILSENQLLLQVTPTAPPKTP 891

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +   + D P+   +S S F   A    ++  ++ ++ E+    ++      +  
Sbjct: 892  LSVCFYQVSFEIDRPQSPLVSQSAFEEAATLYNLLPKVDSWICEQ---LLVDHAQAIHQK 948

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  +  + +  L+ +TL  P  +     ES ++  P      L +L+
Sbjct: 949  GLALAIPLSELALLKEDFRQSLLTLVQQTLLPPQSLYWMIDESTLLQYPFAIGSFLAKLQ 1008

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            ++G  L + +FG   +    L     D +KFN  L+           ++  I   A+   
Sbjct: 1009 QLGCKLIVKEFGHNLNDFELLAEHHIDYLKFNSELIAHIHLNQMDEVLISIINGTAQRAN 1068

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +A  +     + +L  +G D    + +      + +L 
Sbjct: 1069 IATLAGPVELPPTLSKLIDIGVDLADGTMIGRTEPLSEVLN 1109



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 94/307 (30%), Gaps = 18/307 (5%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
                Y++   G  ++++ +      +  A   +AL    +++   Y +       +  +
Sbjct: 141 LAAAWYLAPQNGSFTQVLTVWF----MSEAIGMLALGPVGLLYRRGYFNITNKTKALFDM 196

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
           T+  I  ++  +    Y P     I               +I+  ++        I    
Sbjct: 197 TWMMIVSLSACYLGLMYLPFPFTFIIM------------ALIWASIRLPRFETFTICFLA 244

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            + I  +  +   T  +D  +   A     +L+V++    +   + A     + I     
Sbjct: 245 TLLIAMMINFNLFTLHVDTKLSVQAFSFIPLLMVLIPPHAMAMVMHAFRMEKEHIVESEN 304

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R   A+  S   +         +     +  +LG    ++      +    H  D     
Sbjct: 305 RFRNAMEYSAIGMALVSPEGKWMQVNQALCKLLGYRQETLLT--LTFQQITHPEDLSADL 362

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +LD            E R   +D +  W ++ +  + +     L YI    DI + KKS
Sbjct: 363 KLLDDLYHGHIPSYSMEKRYIRSDGEVVWALLVVSVVRDHEQQPLYYISQVEDINDLKKS 422

Query: 526 LEGILCN 532
                  
Sbjct: 423 EIVNRRL 429



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ DI +  ++    +  +  +   +     R W  YIH  D + 
Sbjct: 430 MERITLANEAGGIGIWELDIRKQLISWDKRMYELYHVPLNTPV-DERVWQQYIHPEDINR 488

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +    + +  R+   + +FR+   +     +  +   + + NG+ILR IG   D+TE +
Sbjct: 489 VKREYSAALTQRQ-PYRLDFRLLLPNGDIVHLRNQANMICDKNGNILRLIGTTLDMTEIR 547

Query: 524 KSLE 527
              E
Sbjct: 548 NLTE 551


>gi|168206611|ref|ZP_02632616.1| GGDEF/EAL domain protein [Clostridium perfringens E str. JGS1987]
 gi|170661992|gb|EDT14675.1| GGDEF/EAL domain protein [Clostridium perfringens E str. JGS1987]
          Length = 775

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/457 (22%), Positives = 199/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +  +      D LT + +R  FL +L TI        N  
Sbjct: 326 LVMILLVCRDVILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKNVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLNQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 553 ETLLRWKHDKLGEISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDKG--IKLKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKEYKIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK ++ T + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVIDARTPSKLAVIEAISILAKKLKVTSVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 731 VENYEDFKLFSSLGFDIVQGYYFSKPLTKSEIIDYIK 767


>gi|110801516|ref|YP_697569.1| GGDEF/EAL domain-containing protein [Clostridium perfringens SM101]
 gi|110682017|gb|ABG85387.1| GGDEF/EAL domain protein [Clostridium perfringens SM101]
          Length = 775

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/457 (22%), Positives = 192/457 (42%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  DI  +K   + +  +      D LT + +R  FL +L  +        N  
Sbjct: 326 LVMILLVCRDIILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLEAM--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKSVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLEQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS----ELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L     N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLKHINILKKDFINDLLADKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D      I   +
Sbjct: 553 ETLLRWKHDKLGEISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDMGIE--IKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  K       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKKYKIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  +      A++ +I  +AK +  T + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVINARTSSKLAVIEAISILAKKLNVTSVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 731 VETYEDFKLFSSLGFDIVQGYYFSKPLTKSEIIDYIK 767


>gi|89900249|ref|YP_522720.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
 gi|89344986|gb|ABD69189.1| diguanylate cyclase [Rhodoferax ferrireducens T118]
          Length = 636

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/692 (14%), Positives = 207/692 (29%), Gaps = 86/692 (12%)

Query: 13  KAFLILVLFLLWMVSPSFAIEPINI----SSSDRVLDLTSITRIYVNQGEDFQVFTAADI 68
              ++ +L      SPS A     +    + +   +D+ +   +  +             
Sbjct: 11  LTCVLGLLAPALHASPSSADASFPVFEVSAQTPGRIDVDTRMGMLTDSTRTLTPDQVMSP 70

Query: 69  D--GISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
                +   +           W  F + N +   L R + +P   L     +    G  +
Sbjct: 71  KQTWQTITRKSPNFGFTEDAYWFRFQIDNLASQDLARFVELPIPFLDDVQLYHYTAGQLK 130

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNFYKDT 184
                  E     R+    + V  + + PGA     + +++         +W+P  + +T
Sbjct: 131 TSYALGDEKPFAQRVLRHQNFVMPLNLAPGAN-LIYIRLASSGTIEAPFRIWDPTQFYET 189

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF-LSKLV 243
             +  L +G++IG+  ++ ++    Y   R    +         L +     G+  +   
Sbjct: 190 NGNEKLLQGMVIGILLIMIVYNLFVYFSTRDINYLFYIGFVASYLLFHLTLNGYTFAYAW 249

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYY 303
                      +    +      +F   +L  +++     Y+T +               
Sbjct: 250 PNAVRWNSFAISTFMASAELFTCLFADGFLRLSKFSRPAHYLTRAL-------------- 295

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
             V+A +  +T                +               I +  + L      R  
Sbjct: 296 ATVSALLLALTFVLPYSLTVRVGAALTI--------------PIALTALALGYWRWWRGA 341

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
               + A    L    +LI   V+         S                S   +     
Sbjct: 342 ----KFARFYCLAWTTVLISLCVLNASKFGLIPSNAWTH---------NASQIGI----- 383

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                                +          I+ +          +    R  R   E 
Sbjct: 384 ------------------VLLVLLLSFTLADRINHDRMLRVNAQAVALGHERWARASQEA 425

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
            ++  ++    +  R+   +N     L          + K + + +   +  D LT I N
Sbjct: 426 LIKTKEDANRELEQRVTARTNDLNRTLG---------QLKLANDQLQRLSNMDGLTQIGN 476

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG-EL 602
           R  F   L      +        ++++ID+D +K +ND  G   GD  L ++   +   +
Sbjct: 477 RAFFDRALALEHRRADR-QKSPLSLIMIDVDHFKLVNDSYGHMGGDACLRAVAHLLQPRI 535

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
            +  D+LAR  G  F I+L++ N    +A           + +      I VTAS G A 
Sbjct: 536 QRVGDVLARYGGEEFVILLVNSNQQDSVALAEGFRADIEQLHVPFEGGTIHVTASFGVAC 595

Query: 663 -WTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                 ++  E+L +A+ A+Y AKH G N V 
Sbjct: 596 GIPDQYLSPQELLAHADKALYQAKHDGRNCVR 627


>gi|313200183|ref|YP_004038841.1| diguanylate phosphodiesterase [Methylovorus sp. MP688]
 gi|312439499|gb|ADQ83605.1| diguanylate phosphodiesterase [Methylovorus sp. MP688]
          Length = 473

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 130/259 (50%), Gaps = 3/259 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +  S R  +  D+  A+   +  L Y P +      I G EAL++W HP  G I    
Sbjct: 197 MQTDISTRHSLYADMRAALAQGQFRLHYQPQVD-AVGNIFGAEALLRWQHPVRGMIPPGV 255

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AEE  +I+ I  ++L+     ++ W    NM  + I +N+++  L   +  + +  
Sbjct: 256 FIAAAEETGLIQPIGTWVLKEACAQLVKWSKDPNMAHLSISVNVSASQLRQPDFVQEVIE 315

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ ++  +P+++KL  +ES++  + + +   +  LR  GIS +LDDFGT  S L+YL ++
Sbjct: 316 IVMRSGATPAQLKLELTESMLAKDVDTTIQKMKALRAFGISWSLDDFGTGYSSLNYLKHL 375

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF+ +K + S +      E   AI+ +++ ++KN+   +IA+ +     +  L   GC  
Sbjct: 376 PFEQLKIDQSFVRDLLTNESDKAIVETLVVLSKNLNMMLIAEGVETIEQLHYLLNKGCMK 435

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    + PL   +  + L
Sbjct: 436 YQGYLFSKPLPIEAFEQFL 454


>gi|149910341|ref|ZP_01898984.1| hypothetical protein PE36_15035 [Moritella sp. PE36]
 gi|149806589|gb|EDM66557.1| hypothetical protein PE36_15035 [Moritella sp. PE36]
          Length = 443

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 191/416 (45%), Gaps = 10/416 (2%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R  FL +L + L            +++I +D   ++    G  + + ++  +   +  L 
Sbjct: 30  RALFLTQLKSALQELQQTQR-SFVLLLIKVDNIAEVEQSFGSELSNKLITIIQTHLQSLT 88

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
              D L  L G+ F ++     ++    D A  ++        +   +I  ++SIG +  
Sbjct: 89  SSNDCLVNLQGDEFALLKTDITDADSAIDLAKEIQSQFRFSFQVNNYKILCSSSIGISL- 147

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED-LCLAVENSEL 720
             +  + S++LK+A++A+ +A+H+G                    ++++ L  A+ N+++
Sbjct: 148 QQAPHSVSQVLKDADIALKNARHQGFGQYHLSTALPTPMKNTQGILQQEKLTRAIINNDI 207

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
              Y PII+L   +++G E +  W          + F+ +AE   +I A++L ++ +   
Sbjct: 208 LPYYQPIIQLNSNQLIGFEVIAHWHEKDQN--GDNNFISLAENTDIIIALDLHIINQACL 265

Query: 781 DIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            +  W         I + +N+++K LL N   E +  +I +    P R+   F E   M 
Sbjct: 266 QLKKWHSSHRDNQQIILTMNLSAKHLLLNGAVEHLIFIIQQQQIPPHRLVFEFREQEFML 325

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIA 897
           + + +   L +LR+IG+ + LDDFGT  S L+     P D VK +         ++K ++
Sbjct: 326 HNKFAIRALEKLRQIGVKVGLDDFGTGFSSLNAFFQYPIDFVKIDSRFTNRMLMSKKDLS 385

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++R I  ++ ++   +I + I  +    +L  +GC++ Q S++A P+ +  + +LL
Sbjct: 386 LIRVIRDISHDMGFKVIVEGIETQQQHAKLVELGCEFGQGSYIAQPMDYMQVNRLL 441


>gi|317056795|ref|YP_004105262.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315449064|gb|ADU22628.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 534

 Score =  296 bits (757), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 182/445 (40%), Gaps = 23/445 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I+            A      G  N + F  +L  + + +             ++  ++ 
Sbjct: 100 ISMLYLFSSRFEDEA------GYHNLRYFSTQLVKLCEDAGLKG---YAAARFNLKHFQA 150

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +N  +G   GD V+ +    + E+   P  + R+ G+ F +++ ++     +      + 
Sbjct: 151 VNHQVGRDYGDVVMHTFIAGLDEISDAPIPVCRIGGDNFIMLMTAKKIKEVVEYLKGTVV 210

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKI--TSSEMLKNAELAMYHAKHRGGNHVESFR 696
                        + V+A+ G              E++    LA+  AK  G + +  F 
Sbjct: 211 SFGDEF----SDRVNVSATAGVYILDDDFEVNIFGEIMDKLSLALSAAKTSGRDDIIFFE 266

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                 +     ++  L  A+E  E ++ Y P + ++D +IVG EAL +W H     I  
Sbjct: 267 PKLMEEKKHIATVQHQLPEAMEKEEFHVYYQPKVSIIDGKIVGAEALYRWKH-DGELIYP 325

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ I E    I  ++ +MLE + RD+  W D+     + I +N++ K +LD +L   +
Sbjct: 326 IGFVPILERSMDICKLDFYMLEHVCRDLRRWIDEGRDI-VRISVNLSRKHILDIDLVRHL 384

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             +I         I++  +E+      +  + ++  L++ GIS ++DDFG   S L+ + 
Sbjct: 385 LHIIDLYGVPHEYIEIELTETTTDVEFKDMKYVVSCLQEQGISTSVDDFGIGYSSLNLIK 444

Query: 875 YIPFDTVKFNGSLM----TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
            I +D +K + S++          R  + + ++ MA+ +    IA+ +     ++ L + 
Sbjct: 445 EITWDVLKIDKSIVPVDEDDERSPRSVMFKYVVAMAREMGLECIAEGVETAKQVEVLRKY 504

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           GCD  Q  +    L      K L+E
Sbjct: 505 GCDVAQGFYYDKALPVEVFEKRLEE 529


>gi|152983337|ref|YP_001352652.1| hypothetical protein mma_0962 [Janthinobacterium sp. Marseille]
 gi|151283414|gb|ABR91824.1| Hypothetical protein mma_0962 [Janthinobacterium sp. Marseille]
          Length = 239

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              EIV  EALI+W HP+ G I   +F+ +AEE  +I  I  ++++ +     +W  Q  
Sbjct: 7   QSGEIVAAEALIRWMHPEKGLIYPIDFIPLAEETRLIIPIGKWVIDTVCAQQSAWLAQ-G 65

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
           +P + + +N+++    D ++   +QA +S    SP+ I+L  +E++V+ +P  ++  +  
Sbjct: 66  IPIVPVALNLSAMQFKDGDVLRDVQAALSTHQISPNHIELELTETLVIQDPVAAKETMHS 125

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
           LR  G+ L+LDDFG   S L+YL   PF +VK + + +T  T      AI ++II M  +
Sbjct: 126 LRDAGLHLSLDDFGIGYSSLAYLKRFPFSSVKIDRTFVTDITTNTGDAAIAKAIIGMGHS 185

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++  +IA+ +     ++ L  +GCD IQ  + + P+  +   K+L+ R
Sbjct: 186 LQLKVIAEGVETAEQLQLLREIGCDQIQGYYFSRPIAADEFGKMLRMR 233


>gi|222834324|gb|EEE72801.1| predicted protein [Populus trichocarpa]
          Length = 399

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 191/394 (48%), Gaps = 17/394 (4%)

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS----- 627
           +D++   NDV G   GD +L +L  R+ + L    +LAR+  + F ++L           
Sbjct: 1   MDRFTAFNDVRGTVRGDALLGALALRLADALPDGVLLARMGADEFAVLLEKAGQEAAEVD 60

Query: 628 LKIADFAIAMRKSIAMPINLL--EREITVTASIGFASWTSSKITS--SEMLKNAELAMYH 683
             +   A  ++ ++  P+ L     E+  + SIG AS+ +S+  S   ++L+ A +A++ 
Sbjct: 61  QHMRALAQVLQDALERPLWLEETGEEVQASCSIGAASFAASRTDSGGHDVLRRAGVALHQ 120

Query: 684 AKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G   V  F+     +   R  I++DL  A+   EL       +       VG E L
Sbjct: 121 AKQAGLGQVVIFQPDMAEAVGKRFRIEKDLRRAIPAGELQPYLQSQVDH-MGRCVGAEVL 179

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP+ G +   +F+ +AEE  +I  +  +MLE+  R ++  R +       + +N++
Sbjct: 180 VRWNHPRLGMVEPGDFIAVAEESDLIVQLGDWMLEQACRMLV--RPEFVQQGWRLSVNVS 237

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +     ++ + ++  ++ T+  P R+ L  +ESVVM + + +R  +  L+ +G+ + LD
Sbjct: 238 WRQFRQPDVVDKLKRTLAATVADPRRLTLEVTESVVMRDVDEARERMAELQLLGVEMGLD 297

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL  +PF  +K + S +    ++    A++ +I+ +A+ +   ++A+ + 
Sbjct: 298 DFGTGYSSLAYLQRLPFRELKIDKSFVQDCHTSPGNAAMVEAILLLARRLRLRVVAEGVE 357

Query: 920 GEIDIKELTRMGCD-YIQDSHVASPLGFNSILKL 952
            E     L     D   Q  H   PL     + L
Sbjct: 358 TEEQAGTLRAWNQDVLFQGYHYGRPLPAVEWVDL 391


>gi|317497246|ref|ZP_07955570.1| EAL domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895491|gb|EFV17649.1| EAL domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 639

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 175/433 (40%), Gaps = 18/433 (4%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
                + D+LTG+ ++  F       +            +++ID+ K K++N + G+  G
Sbjct: 216 YNPQLYIDSLTGLYSKGYFRRWFPEQIKRKKE-----LHLLMIDLWKLKQVNKLYGVTTG 270

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L+ +   + + +   + + R+ GNRF +   S  +     D  + +      P  + 
Sbjct: 271 DELLIQIAEYLHK-INEANHVFRIHGNRFFVFTTSLMDYETNKDAIMKL---FKRPFKVK 326

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
              I+ +A+I              ++   E  +          +      +        +
Sbjct: 327 GERISFSAAICGIINVQEVKEIDVLIDYLEYLVQLKPKSDRTILIQNDQHTKEGFLYEQE 386

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             + +  A+E     + Y P+  L ++    +EAL +  HP  G IS   F+ IAE+   
Sbjct: 387 VKKYMATAIEEDLFEVYYQPLYDLKEKRYRTMEALSRLRHPSLGMISPEVFIGIAEKHGQ 446

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILI--NIASKDLLDNELCEGMQALISKTLYS 824
           I  +      ++ + I               I  N++  +LL +   + +   I +    
Sbjct: 447 IAKLGYLQFRKVCKFIKEHPQIMEKIE---SIKYNLSPLELLKSGYSKKLLRTIEEFDIP 503

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S  +   +E+V     E     +   +K GI + LDDFG+  + L+ +  +PF T+K +
Sbjct: 504 FSYFQFEITETVATEYSEALYQTIADFKKSGIQICLDDFGSGYANLNTVLKLPFSTIKLD 563

Query: 885 GSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+ G        L  ++I+ + +N+   ++A+ +  + +I  L + G D +Q  +   
Sbjct: 564 RSLLNGICYDDQVALLYKNIVAVMQNLGHKVVAEGVETQEEIDLLKQWGVDLVQGYYYTK 623

Query: 943 PLGFNSILKLLKE 955
           PL    I+  L+E
Sbjct: 624 PLDSEQIIHKLEE 636


>gi|315127809|ref|YP_004069812.1| signal transduction protein containing sensor and EAL domains
           [Pseudoalteromonas sp. SM9913]
 gi|315016323|gb|ADT69661.1| predicted signal transduction protein containing sensor and EAL
           domains [Pseudoalteromonas sp. SM9913]
          Length = 846

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/452 (22%), Positives = 193/452 (42%), Gaps = 23/452 (5%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   E  L +A     T + N             ++        T+ ++ I  +  +N +
Sbjct: 396 RYQRERALYHATHTQQTKLLNSAKL-----KYAFMALKAQQRSTTLCLVKIRHFNSLNTI 450

Query: 583 LGIAVGDDVLVSLTR-------------RIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +  + G +++  +                +   +  P  +A L    F  I     +   
Sbjct: 451 ITPSQGYELIKHVAHELECQLSFEREFFNLSNGINQPAKIADLGSGVFACISTKNQSPHT 510

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           + +    +   +     +   ++ +  S+G +++          LK   LA+++AKH   
Sbjct: 511 LEELLKRVVNKLPKTYQIKGLDLQLNYSVGISAFGKR-DDFEFWLKRGYLALHNAKHS-L 568

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           + V S    S  +  V +   L  A+   +L L Y P I L D  + G EAL++W + ++
Sbjct: 569 SKVSSSSADSSLAMDVALAAKLQQAIRTDQLALFYQPQISLKDNSVNGAEALLRWPNTEF 628

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            NIS  + +L+AE   +I  + L+++E+  +DI    ++       I +N+++K+L    
Sbjct: 629 KNISIEKLILLAEHTGIINELTLWVIEQACKDIAKLANEGITEH-SISVNLSAKNLAIAN 687

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L E ++ L+ K    P  +K   +ES  + N +    L+G L  +G+ + LDDFGT  S 
Sbjct: 688 LTEKVENLLIKYQVDPHLLKFELTESAFVENQDALVTLVGELATLGVKVVLDDFGTGYSS 747

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL    F  +K + S +   T+ R    I+++ I MA N+  TI  + +  +   + L
Sbjct: 748 LSYLVNYHFSELKVDKSFVFDLTDNRAHQVIVQTAIDMAHNLGLTITIEGVETQEVHQLL 807

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPL 959
             M  D  Q    A  L +++ L  L  ++ L
Sbjct: 808 NTMKADRTQGYLYAKALSYDNYLDFLNSQYRL 839



 Score =  131 bits (329), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/361 (12%), Positives = 114/361 (31%), Gaps = 9/361 (2%)

Query: 52  IYVNQGEDFQVFTAA--DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPH 109
            Y+++ +                +       S   +  W    L N S  Q + +    +
Sbjct: 50  YYIDKNKTQSFAEVMTKQALFTQQEFNDIPWSFEQQNYWLRLDLENKSSQQEDVVAHFDN 109

Query: 110 YRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN 169
             +     +  +  ++ + +    +      +        R  ++  +    I++I T  
Sbjct: 110 PMVDHLTIYRLNSNNQLLDTYKLGDKEPRLTLFKYSVPHIRFNLDGQSTQRLIIKIDTVG 169

Query: 170 LP--QIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWV 227
           +    I+L+  N + D V S T   GI  GV  + +++  + Y   +  + +        
Sbjct: 170 ISKTPIHLYRHNVFVDLVRSQTGIWGIFAGVLLMASLYNLLLYFGIKDRVYLVYIGYIIS 229

Query: 228 VLGYISIDFGFLSKLVNL-PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYIT 286
            +  +    GF   L  L     +          ++   + F  M+L +++       ++
Sbjct: 230 AIALMGTVLGFGFYLWPLEWQLFIHEKIIVVNYTIAFFTLAFCTMFLRYHKDRCWRYKLS 289

Query: 287 FSGIACIAILFCMSFYYP-MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
              +  + +L  +SF+ P  + A I  + L  + +     I      G+  A   + +W+
Sbjct: 290 VGLLWLMLVLGTLSFFIPENIAAPIFFVILGLLYIVCFILIYNKLKSGFRWAKFYVFSWV 349

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVL---IVILIGFTVIQHVLATGYFSQGIFS 402
            + I      + +T  +             +L   +++ +                   +
Sbjct: 350 PLIIGAAIQPLELTGVITYSFSIRHAFLMAILCEIVLMAMALADRVRYQRERALYHATHT 409

Query: 403 D 403
            
Sbjct: 410 Q 410


>gi|313905310|ref|ZP_07838677.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313469921|gb|EFR65256.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 611

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 174/420 (41%), Gaps = 14/420 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F DNLTG+     F   +  +L+            + +DI     IND  G   G++V+ 
Sbjct: 22  FYDNLTGLLTTYGFYQHVQDVLNRIFDAGQKPVY-IFVDIVGMHHINDEYGYYAGNEVVS 80

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           S+ R +G++     I ARL  + F +++ + +   +I +    +      P+        
Sbjct: 81  SVARLLGQVF-PEGICARLEDDHFLVLVQNTDVKERIGEITN-IYSVNKYPVP------E 132

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           +    G           S     A LA +      G  +  FR   +   R    I   L
Sbjct: 133 IQMKFGLYVQQEIDEDPSVCCDKARLAEHEIHKTAGVFIGEFREEMYEIYRRKNYIITHL 192

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             ++ + E+ + YH IIR + E++  LEAL +W+  + G I   EF+ I E+  +    +
Sbjct: 193 EESIRDHEIEIYYHSIIRSVTEKVCSLEALARWNSKEKGTIMPGEFIPILEKEHLSAIFD 252

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L ++E++ ++I   R+   +  + + +N++  DL   ++   +  L+ K    P  + + 
Sbjct: 253 LHVVEQVLKEIR-LRETIGLALVPVSVNLSLSDLETLDMVAEIGNLLEKYKVEPKYLIIE 311

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E   + NP +   ++      GI + +DDFG   S L+ L    FD +KF+   + G 
Sbjct: 312 IPERACVANPSKVASVIDGFHAKGIRVWMDDFGNGASSLNMLKNFDFDLIKFDKGFLKGY 371

Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               +  AI R  I M  N+    +A+ I       +L  +GC+ +Q      P      
Sbjct: 372 DAGGRAEAIFRYTIMMIHNLHIHTVAEGIETRDQYLQLRLLGCEGMQGFLFTRPKPLREF 431


>gi|315186756|gb|EFU20514.1| diguanylate cyclase/phosphodiesterase [Spirochaeta thermophila DSM
           6578]
          Length = 632

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/410 (22%), Positives = 178/410 (43%), Gaps = 8/410 (1%)

Query: 550 RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL 609
           R    L  ++  +     V+ +      ++  V G  V   ++     RI  L++  D  
Sbjct: 221 RFQEYL--ASRGEGAVCAVIHLASSSLWEVGRVYGRGVQQQIIARAMERIRSLMRPSDEA 278

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKIT 669
                +RF ++        K+      +  S   P  +  R   V+   G A + S    
Sbjct: 279 WTTGEDRFLLVAGGMGERGKVVGLLRRILSSCNRPYVVEGRRFDVSWVAGAAVYPSDSRY 338

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE-DLCLAVENSELYLVYHPII 728
            + +++ AELA+ HA   G  +         R   ++++  +L  A+E +EL L Y P +
Sbjct: 339 PARVVEVAELALEHALKEGRAYSLHEEGWEQRFRSLVMRRHELHRALERNELVLFYQPFV 398

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
              +  +VG EAL++W+HP  G +S  EF+ + E+  +I  +  +++  +       R+Q
Sbjct: 399 D-KEGTVVGAEALLRWNHPDEGILSPGEFLSLLEDKSLILPLGKWVVAEVCGLWARMREQ 457

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
             + P F+ +N+A   L + E        +         +    +E   +   E    + 
Sbjct: 458 GILLP-FLSLNVAPPLLREGEFISFCADRMIACDIPRDVLMFELTERSFLSLAEE-EGVF 515

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMA 906
             LR +GISL +DDFGT  S  +YL       +K + S + G  E+R   AI++S++ +A
Sbjct: 516 ESLRGMGISLCVDDFGTGYSSFNYLKRCWVRAIKLDHSFVEGVPERREDVAIVQSVMRLA 575

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++   +IA+ +     +  L+  GC+  Q  + A P+     L +++ER
Sbjct: 576 GDLGIVVIAEGVERREQVAFLSAQGCEVFQGFYYARPMPEEQFLLVVQER 625


>gi|307719595|ref|YP_003875127.1| hypothetical protein STHERM_c19190 [Spirochaeta thermophila DSM 6192]
 gi|306533320|gb|ADN02854.1| hypothetical protein STHERM_c19190 [Spirochaeta thermophila DSM 6192]
          Length = 1046

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 105/579 (18%), Positives = 210/579 (36%), Gaps = 39/579 (6%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +   +           + + +   D   +     P    I G +   + G     L   
Sbjct: 483  EREYRTSLLLFRWIFEHAYEGMVVTDKEGNIEMVNPAFTEITGYSEEEVIGKNLRILKSD 542

Query: 457  H--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            H      +     L       +G    E   R    + +   + I   +++ G +  Y+G
Sbjct: 543  HHPPEFFERMWHDL-----TTKGWWADEIWNRRKSGEVYPEWLSISRFTDTEGKV-HYVG 596

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            I ++I++QK+  E +   A+ D LT +PNR    DRL      +  +   +  ++ +D+D
Sbjct: 597  IFHEISKQKELEERLRYLAYHDALTDLPNRFLLEDRLDRECARARREGK-KVGLIFVDLD 655

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K++ND  G   GD  LV + R + E  +  D +AR++G+ F I+L   +         
Sbjct: 656  NFKQVNDTFGHRTGDLYLVHVARLLREACREVDTVARIAGDEFVIMLPGLSQKAFALSVL 715

Query: 635  IAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + + +   P       + V+ S G A +     + SE+L  A++A+Y AK +G N   
Sbjct: 716  ERIFRVLREQPFQHGNTTLEVSLSAGLAFFPDDGGSVSEILSRADIALYRAKRQGKNQYA 775

Query: 694  SFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
             F+    +     +     L  A+    + + + P        I  LEAL+     K  +
Sbjct: 776  VFQREDQKVLEEQLGRYDLLRTALAGRTVKVDWEP-WEDRTGRIAYLEALLSC--EKDPS 832

Query: 752  ISSSEFMLIAEELCMIKAINLFMLE--RIARDIISWRDQANMPPIFILINIASKDLLDNE 809
            ++    + +AEE+ +   +   +LE                     ++  I    L D  
Sbjct: 833  LNPGAILTMAEEVNLGGTVGELILEGMATLLHGAGEGAIPPDAIPPLVARIPPSLLFDQS 892

Query: 810  LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL-----TL---- 860
                ++ +       P  + L       M  PE     +  +R +GI++      +    
Sbjct: 893  FLSTLRDMGEAYHLPPGHLILLLPFRSGML-PEHLVRAVEEVRSMGITVGPPGPWIPLEP 951

Query: 861  -DDFGTKCSLLSYLGYIPFDTVKFNGSL-MTGSTEKRIAILRSIIPMAKNIETTIIAKDI 918
             DD            ++PF  + +   L      E   + L +++ + +     ++ + +
Sbjct: 952  RDDA----------IHLPFVILPYPRLLAFRHEVEGNESSLTALMHLLRYRNQKVVVEGV 1001

Query: 919  YGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
              E  +  +  +G D      V   L    +L LL+   
Sbjct: 1002 GDEGGLSWVWGLGADLAAGPAVHGRLPAEQVLPLLRAHL 1040


>gi|158430646|pdb|2R6O|A Chain A, Crystal Structure Of Putative Diguanylate
           CyclasePHOSPHODIESTERASE FROM THIOBACILLUS DENITRIFICANS
 gi|158430647|pdb|2R6O|B Chain B, Crystal Structure Of Putative Diguanylate
           CyclasePHOSPHODIESTERASE FROM THIOBACILLUS DENITRIFICANS
 gi|256032898|pdb|3II8|A Chain A, Crystal Structure Of Putative Diguanylate
           CyclasePHOSPHODIESTERASE COMPLEX WITH CYCLI DI-Gmp
 gi|256032899|pdb|3II8|B Chain B, Crystal Structure Of Putative Diguanylate
           CyclasePHOSPHODIESTERASE COMPLEX WITH CYCLI DI-Gmp
 gi|298508725|pdb|3N3T|A Chain A, Crystal Structure Of Putative Diguanylate
           CyclasePHOSPHODIE Complex With Cyclic Di-Gmp
 gi|298508726|pdb|3N3T|B Chain B, Crystal Structure Of Putative Diguanylate
           CyclasePHOSPHODIE Complex With Cyclic Di-Gmp
          Length = 294

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 70/267 (26%), Positives = 131/267 (49%), Gaps = 3/267 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               +R+ +   L  A+E +EL L Y PI+ L    IVG EAL++W+ P+ G +  S F+
Sbjct: 19  FQGHERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLVXPSAFI 78

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQAL 817
             AE+  +I A++ ++LE     + +W+ Q      + + +NI+++      L   +   
Sbjct: 79  PAAEDTGLIVALSDWVLEACCTQLRAWQQQGRAADDLTLSVNISTRQFEGEHLTRAVDRA 138

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++++   P  ++L  +E+V +   +  R  L  LR  G+ L LDDFGT  S LSYL  +P
Sbjct: 139 LARSGLRPDCLELEITENVXLVXTDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLP 198

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           F  +K + S +           I+ +I+ +A+ +   ++A+ I        L   GC++ 
Sbjct: 199 FHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGXEVVAEGIETAQQYAFLRDRGCEFG 258

Query: 936 QDSHVASPLGFNSILKLLKERFPLVKN 962
           Q +  ++P   ++   LL  +    + 
Sbjct: 259 QGNLXSTPQAADAFASLLDRQKASGQR 285


>gi|163851174|ref|YP_001639217.1| EAL domain-containing protein [Methylobacterium extorquens PA1]
 gi|163662779|gb|ABY30146.1| EAL domain protein [Methylobacterium extorquens PA1]
          Length = 355

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 7/257 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +D   A+   E  L Y PI+      I G EAL++W HP  G +S ++F+  AEE   I
Sbjct: 89  AKDFRAALAGGEFSLAYQPIVSAATGAITGCEALLRWQHPSLGPVSPADFIPPAEETGAI 148

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + I  ++LE   R    W D        + +N++   L D    + + A +  +  +  R
Sbjct: 149 RPIGAWVLEAACRQAAVWPDF-----CRVSVNVSPVQLQDPGFADRVVAALRASGLAAGR 203

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E V+MG+   +   +  LR +G+S+ LDDFGT  S L YL    FD +K + + 
Sbjct: 204 LELELTEGVLMGDVAVALEGVAALRALGVSIALDDFGTGFSSLGYLQRFAFDRLKIDRTF 263

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G  E R +  ++R++  +A++    + A+ I  E + + L  +G   +Q    + P+ 
Sbjct: 264 IRGLGEARESWFLVRTMHDIARHFGMAVTAEGIETEDEARMLREIGATELQGFLFSRPVA 323

Query: 946 FNSILKLLKERFPLVKN 962
                 LL E+   +++
Sbjct: 324 GAVATALLSEQAHRLRS 340


>gi|170764261|ref|ZP_02639719.2| GGDEF/EAL domain protein [Clostridium perfringens CPE str. F4969]
 gi|170714419|gb|EDT26601.1| GGDEF/EAL domain protein [Clostridium perfringens CPE str. F4969]
          Length = 743

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 106/457 (23%), Positives = 197/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +E +      D LT + +R  FL +L TI        N  
Sbjct: 294 LVMILLVCRDVILRKDNLRLIESVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 345

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  I I  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 346 YALFFIYIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKTVFYCRYSGNEFALI-- 403

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 404 --SKLDQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 460

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 461 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 520

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D      I   +
Sbjct: 521 ETLLRWKHDKLGEISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDMGIE--IKCSV 578

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 579 NLSLNTLKSYEKINEILNIYKEYRIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 638

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK +  T + + 
Sbjct: 639 SIDDFGTGYSSLSQISNLYFDELKIPREFVINARTPSKLAVIEAISILAKKLNVTSVIEG 698

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D +Q  + + PL  + I+  +K
Sbjct: 699 VETYEDFKLFSNLGFDIVQGYYFSKPLTKSEIIDYIK 735


>gi|71734680|ref|YP_275648.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71555233|gb|AAZ34444.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 637

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 176/351 (50%), Gaps = 8/351 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +     L  A +D+LTG+PNR+ F   L T ++ +    +    V V+D+D +K +ND+ 
Sbjct: 212 QLSNANLLLANRDSLTGLPNRRHFFQTLDTAMNEALLQRSG-LAVGVLDLDGFKPVNDLY 270

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G +VGD +L+ +  R+   +     ++RL G+ F +++  + +   +  F   +   I  
Sbjct: 271 GHSVGDRLLMRVAERLISAVSDTVQVSRLGGDEFALLVKGDISDEALLMFGKHICTLIHE 330

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
              L E  I + A++GFA++ ++   ++++ + A+ A+Y  K+        F  S     
Sbjct: 331 SFELSEIPIQIGATLGFATFPATADNAAQLYEYADYALYQGKNHNPGSTCLFSASHREQL 390

Query: 704 RVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                 ++ L  A   +E ++++ PII     E V  EAL +W+ P+ G +S + F+ IA
Sbjct: 391 NADGVTEQALRRANLETEFHVLFQPIIESCTRETVAFEALARWNSPELGAVSPAHFIPIA 450

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E + MI  +   +L +  +  +SW       PI +  N+++ D    E  + +  +I  +
Sbjct: 451 ERIGMINELTAPLLTQALQRALSWPS-----PIKLSFNLSAHDCATWESVKRIVEIIENS 505

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  SR+ L  +E+ VM +  + +  + + R++G  ++LDDFGT  S LS 
Sbjct: 506 GFDASRLDLEITETAVMQDIGQVQQAIAQFRQLGCGISLDDFGTGYSSLSQ 556


>gi|85711301|ref|ZP_01042360.1| Signaling protein [Idiomarina baltica OS145]
 gi|85694802|gb|EAQ32741.1| Signaling protein [Idiomarina baltica OS145]
          Length = 519

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/549 (17%), Positives = 194/549 (35%), Gaps = 39/549 (7%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +   V   +     +  +  +  +    S             +H + R       D
Sbjct: 3   AMESASLCV-RVNSAGQVIWFSDALKQL---DSQQTITLGMPLSKLLHADLRSQLLDQFD 58

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             V       Q   ++     +  W      P+ + N  +   + +  DI+ +    E +
Sbjct: 59  YTVTQ-HSHWQGTVKLNLGSRRADWFKAIFVPLYDDNQCLQEQVLVLQDISREVFLDE-L 116

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L  +  D  TG+P R   L  +  +            TV +IDI K++   D  G+  GD
Sbjct: 117 LNESRFDQTTGLPTRVDLLADIKRVNTQ---------TVAIIDIRKFRSYADFYGLEFGD 167

Query: 590 DVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAM-RKSIAMPINL 647
            +L++ +           I + RL G++F +                      IA  I +
Sbjct: 168 RLLMNFSEICKSFFNERHINIYRLYGDKFALAPSFRMVPALFEQQLQRFYAHIIAHHIEV 227

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRV 705
               + +  +IG        +   ++L+ AE A+  AK    G              + +
Sbjct: 228 NGANVALDIAIGM------GVGKGKLLQLAESALARAKTVFSGQRIHVVHEREFCAKNSI 281

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
                +  A+ N+     Y PI     +     EAL++    +  +I    F+  A+   
Sbjct: 282 NWLPKIQSAIRNNRFINYYQPIRSSNGQRPDYYEALVRMRDGE-QDIPPGFFLDKAKTTR 340

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
               I   ++E+                + I +N++ +D+L+ E    +   +       
Sbjct: 341 YYPEITRRVVEQAVVQSAQ-------HDVQISVNVSIEDILNPETVAFITDQLEAY--PE 391

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           S++    +E+    +         R+R +G  + +DDFG   S  S L  +  D +K +G
Sbjct: 392 SKLIFEITETESTEDFSMVDEFTRRVRSLGAEIAIDDFGVGYSNFSRLIQLRPDYLKIDG 451

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S++          +IL  +I + + ++  ++A+ +  E     LT    +++Q  ++  P
Sbjct: 452 SIIKNILEDASSASILNGMISICRELKIPMVAEFVETEQVNGYLTEQQIEFLQGYYIGRP 511

Query: 944 LGFNSILKL 952
                I+KL
Sbjct: 512 SP--DIIKL 518


>gi|238760482|ref|ZP_04621618.1| hypothetical protein yaldo0001_23600 [Yersinia aldovae ATCC 35236]
 gi|238701279|gb|EEP93860.1| hypothetical protein yaldo0001_23600 [Yersinia aldovae ATCC 35236]
          Length = 1116

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 107/581 (18%), Positives = 221/581 (38%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D   +     P    + G
Sbjct: 533  ILRLIGTTLDMTELRNLTEELHEEKERLHITLDSIGEAVVCTDQDMNITFMNPVAEKMTG 592

Query: 440  LASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
             A+    G   + +  +    D       ++  +  R    L     +   D Q++ +  
Sbjct: 593  WANTIALGQPISEIVKLTNGVDGPEISNPIEHCLTNRPFSSLNASMVLHHRDGQYYDIQE 652

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    G I+  + +  D+ E +  +  +  +A  DNLTG+PNR  F  RL   +  
Sbjct: 653  SVAPLKTLEGHIVGAVLVFQDVGESRAMMRKLSHSALHDNLTGLPNRADFEIRLKAAIQK 712

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            ++  D     +  +D+D +K IND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 713  ASDLDQQH-ALAFLDLDHFKTINDTAGHPAGDALLKELSQLMRQHLRSSDCVARLGGDEF 771

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 772  GLLMLNCTLPHAKAITQSLVSIINGYHFYWEDKLYRIGASAGVTQISSSNNQRSEIMAQA 831

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE 733
            ++A Y AK  G   V  ++    +      +    E +   + N++L L+  P       
Sbjct: 832  DIACYTAKRSGRGQVYLYQPQQKQLLARQHQLPGLEKIESIINNNQLSLLMAPTAPPKTP 891

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +  ++        IS + F   A    ++  ++ ++ E++           N  
Sbjct: 892  LSVCFYQVSVEVTRSDDMFISQAAFEEAALLYGLLPRVDSWVCEQLLLTQA---KAINRK 948

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  E  + +   + +T  +P  +     ES ++  P      L +L+
Sbjct: 949  GLALAIPLSEVALLKEEFRQSLLTRVQQTQLTPQSLYWIVDESTLLQYPLVVGNFLAKLQ 1008

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            ++G  L + +FG   +    L     D +KFN  L+T          ++  I   A+   
Sbjct: 1009 QLGCKLIIKEFGHNLNDFDLLTAHTIDYLKFNSELITNIHTNQMDEVLISIINGTAQRAS 1068

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               IA      + + +L  +         +   +    +L 
Sbjct: 1069 IGTIAGPADLPLTLTKLISLDVALADGETIGPAIPLRDLLN 1109



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 107/351 (30%), Gaps = 35/351 (9%)

Query: 204 IFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSS 263
           +F  + + V    ++     +A     Y++   G   ++  +      +  A   +AL  
Sbjct: 121 LFSWLKFSVCTVIIVPLLSGLAAA--WYLAPQSGEFIQVFTVWF----MSEAIGMLALGP 174

Query: 264 SLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYT 323
             +++   Y +       +  +    I  +A  +    Y P     I             
Sbjct: 175 VGLLYRRGYFNVATKSKALFNMILMLIVSLAACYIGLVYLPFPFTFIIMAQ--------- 225

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG 383
              I+  ++        I  +  + I  +  +       D  +   A     +L+V++  
Sbjct: 226 ---IWVAIRLPRFETFTICFFATLMIAMMINFNLFVLPGDTKLSVQAFSFIPLLMVLIPP 282

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
             +   + +     + I     R   A+  S   +         +     +  +LG    
Sbjct: 283 HAMAMVMHSFRMEKEHIIESENRFRNAMEYSAIGMALVSPEGQWMQVNKALCKLLGYNQE 342

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
           ++     N+    H +D      +LD            E R   +D    W ++ +  + 
Sbjct: 343 TLLT--LNFQQITHPDDLCADLKLLDDLYHGVIPSYSMEKRYIRSDGDVVWALLVVSVVR 400

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +     L YI    DI + K+              T I NR+  ++R+T  
Sbjct: 401 DHEQQPLYYIAQVEDINDLKR--------------TEIINRR-LMERITLA 436



 Score = 95.8 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ D+ +  ++    +  +  +   +       W  +IH  D + 
Sbjct: 430 MERITLANEAGGIGIWELDVKKQTISWDKRMYELYHIPLNTPVDDN-VWRRHIHPEDLNR 488

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 + +  R+   + EFR+   + +   +  +   + + NG+ILR IG   D+TE +
Sbjct: 489 VNREYSAALNQRK-PYRLEFRLLLPNGEILHLRNQANMICDKNGNILRLIGTTLDMTELR 547

Query: 524 KSLEGIL 530
              E + 
Sbjct: 548 NLTEELH 554


>gi|228968427|ref|ZP_04129418.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791266|gb|EEM38877.1| Sensory box/GGDEF [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 262

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 133/252 (52%), Gaps = 3/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I++DL +A+ N E +LVY P I     +I+G EALI+W HP  G+IS  EF+ I EE  
Sbjct: 6   RIEKDLPIALVNKEFHLVYQPQIDTATNKIIGAEALIRWKHPLLGDISPCEFIPIVEETP 65

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  +  ++L+     +  W        + I +N+++K+   ++L E +  +++     P
Sbjct: 66  QVVPLGHWVLQEACLQLKIWH-ILGYQNLKISVNLSAKEFRQDQLIENISQILNNVSVDP 124

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             + L  +E + M + + + L L +L++ GI  ++DDFGT  S L+YL   P DT+K   
Sbjct: 125 KYVTLELTERIAMIDEKETLLRLKQLKEYGIQTSIDDFGTGYSSLAYLSIFPIDTLKVPR 184

Query: 886 SLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                     +  AI+ +I+ +A  +  +++A+ I  E  +K L +  C Y+Q  + + P
Sbjct: 185 EFTQLADHRPEERAIVSTILSLANTLNLSVVAEGIETEKQLKFLQKHNCKYMQGYYFSKP 244

Query: 944 LGFNSILKLLKE 955
           L  N  +K L++
Sbjct: 245 LTSNQFIKFLQK 256


>gi|238783832|ref|ZP_04627850.1| hypothetical protein yberc0001_29060 [Yersinia bercovieri ATCC 43970]
 gi|238715219|gb|EEQ07213.1| hypothetical protein yberc0001_29060 [Yersinia bercovieri ATCC 43970]
          Length = 1116

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 106/581 (18%), Positives = 225/581 (38%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 533  ILRLIGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCTDQEMKITFMNPVAEKMTG 592

Query: 440  LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYR-RGRLQYEFRVRAADNQFHWMII 497
             A+    G    + +   +  +       +   + +R    L     +   D Q++ +  
Sbjct: 593  WANTIALGQPVNHIIKLTNGVEGPEITDPIAHCLNHRSNSSLNESIVLHHRDGQYYDIQE 652

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    G+++  + +  D+ E +  +  +  +A  DNLTG+PNR +F ++L   + +
Sbjct: 653  SVAPLKTLEGEVVGAVMVFQDVGESRAMMRKLSHSASHDNLTGLPNRANFENKLKAAIQV 712

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S   +     +  +D+D +K IND  G   GD +L  +++ + + L+  D +ARL G+ F
Sbjct: 713  SVELNQQH-ALAFLDLDYFKAINDTAGHPAGDALLKEISQLMRQHLRNSDCVARLGGDEF 771

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +            +   + AS G    +SS    SE++  A
Sbjct: 772  GLLMLNCTLPHAKAITQSLVSTINGYQFYWENKLYRIGASAGVTQISSSNNQRSEIMAQA 831

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE----NSELYLVYHPIIRLMDE 733
            ++A Y AKH G   V  ++    +             VE    +S+L L   P       
Sbjct: 832  DIACYTAKHSGRGQVFLYQPRQKQLLARQHDLLSREDVETILSDSQLTLQLTPTAPPKTP 891

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +     + P+  N+S + F   A    ++  ++ ++ E+    +++  +  N  
Sbjct: 892  LSVCFYQVSFIVNRPENINVSEAAFQEAALLYGLLPQVDGWVCEQ---LLVAQAEAINRK 948

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  E  + +  L+ +T   P  +     ES ++  P      L +L+
Sbjct: 949  GLALAIPLSETALLKEEFRQSLLTLVQQTPLPPHSLYWMVDESTLLQYPFAIGNFLAKLQ 1008

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            ++G  L + +FG   +    L     + +KFN  L+           ++  I   A+   
Sbjct: 1009 QLGCQLIVKEFGHNLNDFELLAEHTINYLKFNSDLIAHIHINQMDEVLVSIINGTAQRAN 1068

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +A        + +L  +G D      +      + +L 
Sbjct: 1069 IATLAGPAELPQILNKLIVIGVDLADGETIGRTQPLSEVLN 1109



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 96/307 (31%), Gaps = 18/307 (5%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYI 285
                Y++ D G   ++  +      +  A   +AL    +++   Y +       +  +
Sbjct: 141 LAAAWYLAPDNGSFGQVFTVWF----MSEAIGMLALGPVGLLYRRGYFNIATKSKALFDM 196

Query: 286 TFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWI 345
            +  I  +++ +    Y P     +               +I+  ++        I    
Sbjct: 197 MWMIILSLSVCYIGLLYLPFPFTFVIMS------------LIWVAIRLPRFETFTICFLA 244

Query: 346 LIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE 405
            + I  +  +   T + D  ++  A     +L+V++    +   + A     + I     
Sbjct: 245 TLLIALMINFNLFTLQADTKMLVQAFSFIPLLMVLIPPHAMAMVMHAFRMEKEHIIESEN 304

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R   A+  S   +         +     +  +LG +  ++      +    H  D     
Sbjct: 305 RFRNAMEYSAIGMALVSPEGQWMQVNQALCRLLGYSQETLLT--LTFQQITHPEDLSADL 362

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            +LD     R      E R   +D +  W ++ +  + +     L YI    DI + KKS
Sbjct: 363 KLLDDLYHDRIPSYSMEKRYIRSDGEVVWALLVVSVVRDHQQQPLYYISQVEDINDLKKS 422

Query: 526 LEGILCN 532
                  
Sbjct: 423 EIINRRL 429



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ D+ +  ++    +  +  +   +     + W  ++H  D + 
Sbjct: 430 MERITLANEAGGIGIWELDLKKQLISWDKRMYELYHIPLHTPVDD-KVWRRHVHPEDLNR 488

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
                 + +  R+   + EFR+   + +   +  +   + + +G+ILR IG   D+TE +
Sbjct: 489 VNREYSAALKQRQ-PYRLEFRLLLPNGEIVHLRNQANMVCDKHGNILRLIGTTLDMTEIR 547

Query: 524 KSLE 527
              E
Sbjct: 548 NLTE 551


>gi|206580435|ref|YP_002239215.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|206569493|gb|ACI11269.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
          Length = 587

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 92/430 (21%), Positives = 193/430 (44%), Gaps = 19/430 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-VIDIDKYKKINDVLGIAVGDDVL 592
           + D +T +PNRQ  L  +       +T+   R  ++  ID+    ++   LG+   +++L
Sbjct: 165 YLDIVTLLPNRQRLLKDIE-----VSTEGAFRLVIIDCIDMPLAYEMARSLGMTAVENLL 219

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSIAMPINLLER 650
            ++   +   L     L  ++  RF      E       I+     ++  +   + L   
Sbjct: 220 RNMVAELQVRLPLEGPLYAVAVGRFAFFTHKEKTRTLEDISQSLQGIQARLTPEVPLD-- 277

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKE 709
              +   IG +      +TS+E+L+ A  A++    +G         + S +     +  
Sbjct: 278 ---LDIHIGDSGLCDKSLTSNEILRRAVSALHEGISQGRRFTVYDDALDSRKKTDFSLLT 334

Query: 710 DLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++  A  EN  LYLVY P I L+   + G EAL++W HPK G +    F+ + E+  +++
Sbjct: 335 EVRQALQENQGLYLVYQPKISLVTGRVTGAEALLRWQHPKNGEVLPGVFIPLVEKTSLMR 394

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++++     + +W+ +       + IN+A+ D    + C+ ++  +      P+ +
Sbjct: 395 ELTAWVIDHTIVQLSAWQSRG--LSFPVSINLAASDFSRPDFCDELEQKMLDARLDPALL 452

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +   E+  M     + + L  L++ G  ++LDDFG+  S ++YL  IP D +K + S++
Sbjct: 453 GVECLETEKMLESPAALIGLDMLKQRGFKISLDDFGSGYSNINYLRQIPMDIIKLDRSIV 512

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +          I+R++I + K ++  ++A+ +     +  L R+GCD +Q    A P+  
Sbjct: 513 SKVAGDNASRIIVRNVITLLKQLDYIVLAEGVEDARTVDILRRLGCDEVQGYFFAKPMTP 572

Query: 947 NSILKLLKER 956
           ++       R
Sbjct: 573 DAFETWYHGR 582


>gi|13449210|ref|NP_085426.1| Tn501, conserved hypothetical orf [Shigella flexneri 5a]
 gi|13310758|gb|AAK18582.1|AF348706_271 Tn501, conserved hypothetical orf [Shigella flexneri 5a]
          Length = 485

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 5/248 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  AVE  +L L Y P++ L    IVG EAL++W HP  G +   +F+ + E   ++  
Sbjct: 169 ELAQAVERGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPE 228

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R +  WR      P  + +N ++  +   +    ++ +++        ++
Sbjct: 229 IGAWVLGEACRQMRDWR-MLAWRPFRLAVNASASQVG-PDFDGWVKGVLADAELPAEYLE 286

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + 
Sbjct: 287 IELTESVAFGDPAIF-PALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVA 345

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G     +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+   
Sbjct: 346 GLANDRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPAA 405

Query: 948 SILKLLKE 955
           +    + +
Sbjct: 406 AFAVFVSQ 413


>gi|317065024|ref|ZP_07929509.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690700|gb|EFS27535.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
           49185]
          Length = 286

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 129/254 (50%), Gaps = 3/254 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I++++  A+EN+E  + + P + L   +I G EAL++W  PK G I   EF+ I E+  
Sbjct: 24  NIEDNMEHALENNEFIVYFQPKVELKTNKIAGAEALVRWQDPKKGLIPPDEFIPIFEKNG 83

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +++++ E + + I  W ++    PI + +N++   L +    +  + +  K     
Sbjct: 84  FITKLDIYVFEEVCKTIRKWLNEGIN-PIPVSVNLSRMHLQNPNFLKKYKEIQEKYEVPA 142

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +++  +E++V  N E+ + ++  + ++G S ++DDFG+  S L+ L  IP D +K + 
Sbjct: 143 DLLEIELTETLVFENFEQLKKVIDDIHQMGFSCSIDDFGSGYSSLNLLKEIPVDILKLDR 202

Query: 886 SLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                 + ++  +++ SII +AK +  T I++ +     ++ L +  CD +Q    + PL
Sbjct: 203 IFFSKKNDKRGNSVIESIISLAKKLNMTTISEGVETISQVEFLRKADCDLVQGYVYSKPL 262

Query: 945 GFNSIL-KLLKERF 957
             +      LK   
Sbjct: 263 AKDDFEITFLKNEN 276


>gi|257470820|ref|ZP_05634910.1| putative signaling protein [Fusobacterium ulcerans ATCC 49185]
          Length = 279

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 129/254 (50%), Gaps = 3/254 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            I++++  A+EN+E  + + P + L   +I G EAL++W  PK G I   EF+ I E+  
Sbjct: 17  NIEDNMEHALENNEFIVYFQPKVELKTNKIAGAEALVRWQDPKKGLIPPDEFIPIFEKNG 76

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  +++++ E + + I  W ++    PI + +N++   L +    +  + +  K     
Sbjct: 77  FITKLDIYVFEEVCKTIRKWLNEGIN-PIPVSVNLSRMHLQNPNFLKKYKEIQEKYEVPA 135

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             +++  +E++V  N E+ + ++  + ++G S ++DDFG+  S L+ L  IP D +K + 
Sbjct: 136 DLLEIELTETLVFENFEQLKKVIDDIHQMGFSCSIDDFGSGYSSLNLLKEIPVDILKLDR 195

Query: 886 SLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                 + ++  +++ SII +AK +  T I++ +     ++ L +  CD +Q    + PL
Sbjct: 196 IFFSKKNDKRGNSVIESIISLAKKLNMTTISEGVETISQVEFLRKADCDLVQGYVYSKPL 255

Query: 945 GFNSIL-KLLKERF 957
             +      LK   
Sbjct: 256 AKDDFEITFLKNEN 269


>gi|156933840|ref|YP_001437756.1| hypothetical protein ESA_01666 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532094|gb|ABU76920.1| hypothetical protein ESA_01666 [Cronobacter sakazakii ATCC BAA-894]
          Length = 583

 Score =  294 bits (754), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/477 (22%), Positives = 200/477 (41%), Gaps = 29/477 (6%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA-----------------FQDNLTGIP 542
            P+   +G +   IG+  D   Q  + E     +                 F D +T +P
Sbjct: 113 APLRTRDGSLTGIIGM-TDTVAQPFNDERARTLSLIAGLTGAWLETLNAVGFLDPVTRLP 171

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT--RRIG 600
           NRQ  L  +  + +  +T+         ID+    ++   LG+   + +L  L    R+ 
Sbjct: 172 NRQKLLADMERLCESGSTERYTLMIFDCIDMPTAYELARSLGMPALETLLNDLGPLLRMK 231

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
             LK   +L  ++  R+ ++L     + K      A+   +   + L    I +    G 
Sbjct: 232 LRLKSDTVLYNVATGRYALLLK--TRNQKAIRRNAAVLPLVNARM-LQGINIRLNIFAGE 288

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDL-CLAVENS 718
            +W   K T +E L+ A  A++ A      +          R+    +  DL     +N 
Sbjct: 289 VAWQPEKTTPNEALRRAISAVHEAIWLNKRHMAFDAERDEKRNVDFQLLHDLSESIAKNR 348

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            LYL+Y P I+L     VG EAL++W HP  G+I    F+ +A+   +++ I  +++   
Sbjct: 349 GLYLMYQPKIKLSTNRAVGAEALLRWRHPTRGDIPPGVFIPLAQNTSLMEEITQWVIGAA 408

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            + +  WR +     + + +NI+  DL      + ++  + +   S + I++   E+   
Sbjct: 409 LQQLQKWRKEG--VTLPLSVNISVSDLSRRGFADALEERVLRAGLSTNDIRIECLETEKA 466

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--I 896
              E +   +  L+  G  + LDDFG   S ++YL  IP D +K + SL +   ++R   
Sbjct: 467 LESETALSEMDMLKLRGFKILLDDFGAGYSNINYLRRIPIDIIKLDRSLTSSIAQERSSQ 526

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            I+R++I M K ++  ++A+ +      + L   GCD  Q    + P+    I + +
Sbjct: 527 IIVRNVIQMLKELDYVVLAEGVEDAETARLLLEFGCDEAQGYFFSRPVEPEYIAQWI 583


>gi|310780401|ref|YP_003968733.1| diguanylate phosphodiesterase [Ilyobacter polytropus DSM 2926]
 gi|309749724|gb|ADO84385.1| diguanylate phosphodiesterase [Ilyobacter polytropus DSM 2926]
          Length = 553

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/451 (23%), Positives = 191/451 (42%), Gaps = 29/451 (6%)

Query: 512 YIGIAND--ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
             GI  D  ++  KK  +     +F ++ T +PN + F +            +N      
Sbjct: 113 ITGIIIDFLVSTIKKLNK----LSFYNHFTNLPNARYFEN--------MRIKENTPGYFF 160

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNS 627
           +I+++ Y +I   LG       +++  + +  ++       +  L  N+FG+++   N  
Sbjct: 161 IIEMNNYSQILYNLGYEFSMKFVIAFAKEVSGIIKSYEDSQVFHLQDNKFGVLIKDPNEK 220

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
                 +    K   M I +   E+     +G A    +      +LK AE A   AK  
Sbjct: 221 E----ISKKFLKLGQMAIKVDGIEVHPYIFVGAARCEKNSCD---LLKKAEYARLFAKKN 273

Query: 688 GG-NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
               H+     SS       + E+   A+ N E +L YHP   +    +   E LI+W H
Sbjct: 274 LRDYHMYIPETSSKIDRNFKLFEEFPRAISNDEFFLCYHPKFEVSTGLVKEAEVLIRWMH 333

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           PK G +  +EF+   E    I  I  ++L +  + +           I + IN+  K L 
Sbjct: 334 PKKGTVGPNEFIPYLETTTFITKITKWILRQSLKSLNIMEKAG--VDIKLSINVPLKILE 391

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D E    ++  + +  Y   +I+    E   + + ++   ++  ++K+GIS +LDDFGT 
Sbjct: 392 DPEFIAYLKE-LRQMGYPLKKIEFEILERDCVEDFKKISHIMNSIKKMGISFSLDDFGTG 450

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S LSY+  +PFD +K +   +    + R    I++S I MA N+  T++A+ +  E  +
Sbjct: 451 YSALSYVKKLPFDKIKLDMMFIKDLEQSRENMGIVKSAIDMAHNMGITVVAEGVESEDTL 510

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           + L ++ CD+ Q  +   PL     +K    
Sbjct: 511 EMLKKLKCDHAQGFYFNHPLRRVEFIKWYHS 541


>gi|322836484|ref|YP_004215861.1| diguanylate phosphodiesterase [Rahnella sp. Y9602]
 gi|321171037|gb|ADW76734.1| diguanylate phosphodiesterase with GAF sensor(s) [Rahnella sp.
           Y9602]
          Length = 590

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 205/482 (42%), Gaps = 35/482 (7%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEG-----------------ILCNAFQDNLTGI 541
             P+   +G  +  + I  DI  +  S E                       + D +T +
Sbjct: 114 GCPLKTRDGVAVGTLCIL-DIQPRILSDEQIGIFETLAELISDFLASWHALGYIDVVTLL 172

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNRQ  L  +  +   +         +  ID+    ++   LG+ V +++L  +   +  
Sbjct: 173 PNRQRLLKDIEILAVGAFR----VIIIDCIDMPLAYEMARSLGMHVVENLLRDMATELHA 228

Query: 602 LLKFPDILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            L F   L  ++  RF     ++   +   I       +  I   + L      +   IG
Sbjct: 229 RLPFAGKLYAVAVGRFAFFTPAQMALSLDDITLSLQGTQARINREVALD-----LDIHIG 283

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
            +    + +T +E+L+ A  A++ +   G         +   +     +  +L   ++ +
Sbjct: 284 DSGLCDNNLTPNEILRRAVSALHESISHGQRFSTYDGALDMRKKSDFSLLTELRQTLKKN 343

Query: 719 E-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
           + LYLVY P I L+   + G EAL++W HPK G +   +F+ + E+  +++ +  ++++ 
Sbjct: 344 QGLYLVYQPKISLVTGRVTGAEALLRWQHPKNGEVLPGKFIPLVEKTSLMRELTAWVIDH 403

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               + +WRD+     + + +N+A+ D    +  E ++  +      PS + +   E+  
Sbjct: 404 TIAQLSAWRDRG--LSLPVSVNLAASDFSRPDFAEELEQKLRDARLDPSLLGVECLETEK 461

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA 897
           M     +   L  L+  G  ++LDDFG+  S ++YL  IP D +K + S+++     + +
Sbjct: 462 MLESPTALNGLAMLKLRGFKISLDDFGSGYSNINYLRQIPMDIIKLDRSIVSEIARDKPS 521

Query: 898 IL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  R+++ + K ++  ++A+ +     ++ L  +GCD +Q    A P+   +     + 
Sbjct: 522 LIIARNVVMLLKQLDYVVLAEGVEDAQTVEILRGLGCDEVQGYFYAKPMVSVAFEAWYRA 581

Query: 956 RF 957
           R 
Sbjct: 582 RN 583


>gi|149376986|ref|ZP_01894740.1| PAS sensor diguanylate cyclase and phophodiesterase [Marinobacter
           algicola DG893]
 gi|149358763|gb|EDM47233.1| PAS sensor diguanylate cyclase and phophodiesterase [Marinobacter
           algicola DG893]
          Length = 814

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 97/567 (17%), Positives = 217/567 (38%), Gaps = 25/567 (4%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----GLASGSMHGPIRNWLP 454
                 +     +  + D+V   D   + +              GL   S          
Sbjct: 243 ARQQAEQMLGATINATNDLVVAVDRQLNLLHFNRAFRRQFEITFGLRPESGSNLSTLLQS 302

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +   N+R     +        R     E  +     +     I  + ++N  GD++  + 
Sbjct: 303 F--PNERRLIERLWHRAFE--RDSFVVEMPMAQQHRELPLYEIHYQRLTNDQGDVIGAVH 358

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +A DI+ + ++          D +TG+ NR++FL RL   L+     ++   +++ +D+D
Sbjct: 359 VARDISNRLQNSSSSEYRIQHDPVTGLMNRKAFLGRLQRTLEHKPRRESSD-SLLYLDLD 417

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +   ND+ G    D  L  L   +G  ++  D LARL+G+ F +++ +   + +    A
Sbjct: 418 GFDHFNDIAGSGTCDRYLRELAGNLGVKIRQRDALARLAGDTFALLIENCPEA-RARKIA 476

Query: 635 IAMRKSIAMP-INLLEREITVTASIGFASWTSSK-ITSSEMLKNAELAMYHAKHRGGNHV 692
            ++ + I     +  ++++  TAS G           S ++L  A    + AK  G N +
Sbjct: 477 DSILELIGGFVFHWQDKQLQTTASGGLLFLDDDAPTDSEQLLTQAADLCHTAKTSGRNRI 536

Query: 693 ES---FRVSSFRSDRVMIKEDLCLAVENSELYLVYH---PIIRLMDEEIVGLEALIQWDH 746
            +     +S        +   +  A+++  L L Y    P+  +   + + +   I  + 
Sbjct: 537 HAARAMSLSLDEGTTNQVLTQIQQALDSGYLKLEYQSLRPVASITWGDHIEILTRIPGET 596

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P    ++   F+ +AE   + K ++  ++ +    +   R        +   N++   +L
Sbjct: 597 PDSPPLTPDAFLPVAERFDLAKRLDRQVIRQTLAWLEQHRLLEPRLK-YCGFNLSLASVL 655

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           D+   + M+A +  + ++P    L   E+     P+   +L   L +IG  + LD  G  
Sbjct: 656 DDSFADFMEAALKGSPFAPECFCLEIREAHATQYPDDVAVLCDSLHRIGCRVALD--GAG 713

Query: 867 CS--LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
            S         +P D +K +  +M    +   +  ++ ++  +A+      +A  I  + 
Sbjct: 714 ASVESYGLAAKLPVDIIKLDHKIMQHLNDDPVQQVMVEALHKIAEAAGKVTVATFIENDD 773

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
            ++++  +G  Y Q   +  P     +
Sbjct: 774 TLRKVRTLGIHYGQGFRLYRPRPLEEL 800



 Score = 41.9 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 9/148 (6%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           Q   A          D     L    +G  +W+ D+  + +  T  +  +L L  GS   
Sbjct: 107 QAASAFITQRDHTPIDHRLIRLTETSAGVGIWELDLHSNELIWTDGMYHLLELRPGSEIT 166

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           P +        + +   R +    +   +        +  A      + +  R +     
Sbjct: 167 PEQALFYC--QSSQGRIRALFRRCIRTGQ-PFSLTLDLITARQNVRRVTLTGRALKAGE- 222

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQ 535
            I R  G   D T      E     A Q
Sbjct: 223 RIQRLGGTLVDQT-----PERNHTLARQ 245


>gi|222837155|gb|EEE75534.1| predicted protein [Populus trichocarpa]
          Length = 575

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 180/437 (41%), Gaps = 36/437 (8%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              I  V    + +Q +    ER       + + +         +     ++ + G    
Sbjct: 119 VVQITDVSHHHHVAQKVRDSEERMRKFTEVTTEAI-VMHRDGLIIDGNEALSRLAGYTLD 177

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            + G     L YI    R      L      R  R      ++  D     + I  + M 
Sbjct: 178 ELTGRPI--LDYICPEFR---LYALQYMRSGREDRFDGA--IQHKDGHRIPVEIEAKTMP 230

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            + G+  R + +  DIT ++ + E +   A  D LT +PNR   +  L   L L++    
Sbjct: 231 -AEGEPYRIV-LVRDITLRQLAQERMDFLAQHDQLTQLPNRVRLIQMLRQALSLASVKRR 288

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V++ID+D +K IND LG   GD +L  + +R+   ++  D++AR+ G+ F ++L  
Sbjct: 289 A-LAVLIIDLDHFKTINDSLGHQAGDLLLCEVAQRLRGSVRAHDLVARVGGDEFVVVLTD 347

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           + +  +    A  +++ I  P  +    +                    +L  AE AM+ 
Sbjct: 348 DPDPQETETQASHLQRIIEAPCAIDGTPL--------------------LLNRAESAMHM 387

Query: 684 AKHRGGNHVESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           AK  G  +++ +  +      ++  +M ++ L  A+E  E  L Y P     D  + G E
Sbjct: 388 AKDSGRRNLQFYAPAQDGQATQAQMLMQEQQLRGALERGEFELYYQPQTFTADGRLAGFE 447

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G +   EF+  AE   +I AI+ ++L    R    W+D+    P+ + +N
Sbjct: 448 ALVRWRHPQRGLVLPGEFIGFAEARGLISAIDHWVLREACRQARQWQDEGLA-PVPLSVN 506

Query: 800 IASKDLLDNELCEGMQA 816
           +++ +    ++   +  
Sbjct: 507 LSALEFRQRDMAREVAQ 523


>gi|212702143|ref|ZP_03310271.1| hypothetical protein DESPIG_00153 [Desulfovibrio piger ATCC 29098]
 gi|212674417|gb|EEB34900.1| hypothetical protein DESPIG_00153 [Desulfovibrio piger ATCC 29098]
          Length = 419

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 170/424 (40%), Gaps = 19/424 (4%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F   L   L  S         V+ + + +Y  + ++ G       L  +       ++ 
Sbjct: 3   WFRQHLPASLKDSGN------AVVKMCVRQYPFLVEIFGQEKSTYFLKQVKEIADRHVRE 56

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            +  +R + + F  +L    +   I D   +    +   I++      +    G + +  
Sbjct: 57  DEFFSRDTDDYFYFLLNDI-DKDIICDRLNSFFYDLNENIDIGNIYYQLAFYCGVSIYDG 115

Query: 666 SKI---TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSEL 720
                  +  ++ + + A+  AK    N +  F      ++ +   I+  +  A+EN E 
Sbjct: 116 EGDPEKNAELLMTHVQFALEKAKGAHINFIWFFDSELHITEELENYIESHMHQALENKEF 175

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   P   L   ++ G EAL++W       +S ++F+ + E+      ++ +M+ +   
Sbjct: 176 KLFLQPKKNLHTGKLEGAEALVRWKPSNGRILSPNQFIPLFEKNGFCVELDFYMIRQACC 235

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            I SW +Q  + P+ I +N +     + +  E +Q ++ +       I L   E + M +
Sbjct: 236 QINSWINQ-GIEPVPISVNQSKLVFFERDYVETLQQILDEHQIPAELIVLEILEGLAMDS 294

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM----TGSTEKRI 896
            +     +G L+K G  ++LDDFG+  S ++ L  +  + +K +   +    +   E+  
Sbjct: 295 TDLLNERIGALQKAGFRISLDDFGSGYSSMNTLSRLKINELKLDRGFLFSNSSLDRERNS 354

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK--LLK 954
            IL  II ++  +  + +A+ +    D + +  +GCD  Q     +P+      +  ++ 
Sbjct: 355 LILEQIIQLSHKLGISTVAEGVETVEDEELVRSIGCDVGQGYLYHAPISAAEFTEIYMVD 414

Query: 955 ERFP 958
            + P
Sbjct: 415 RKAP 418


>gi|197302620|ref|ZP_03167674.1| hypothetical protein RUMLAC_01349 [Ruminococcus lactaris ATCC
           29176]
 gi|197298202|gb|EDY32748.1| hypothetical protein RUMLAC_01349 [Ruminococcus lactaris ATCC
           29176]
          Length = 554

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 186/440 (42%), Gaps = 25/440 (5%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT QK   +     ++ D LTG+ NR SF+    +       D+      + +DI+  K 
Sbjct: 137 ITLQK-LQKQQEYLSYHDKLTGLYNRNSFV----SYTTDINPDELNSLGAVSVDINGLKN 191

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
            N   G   GD+V++ +   + E       + R++G+ + +++ +      +        
Sbjct: 192 FNKEFGRDYGDEVVIRVGEVLEEYFH-TANVYRMTGDEYLVLVENITYEEFMKQVHGTYT 250

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           K            I++  +    +W    I    ++ +AE  M   K +       ++  
Sbjct: 251 KL---------DNISLGLASLGCAWEKIDIDVDALVLSAENMMREEKKK------YYKNL 295

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                  +IK+DL   +E     +   P I +    + G EA++++ H   G +    ++
Sbjct: 296 RKGHHEPIIKQDLLEDIEEGRFIVCLVPKIDVATGNVAGAEAVVRYHHKDLGIMEPGRYI 355

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            + EE  +   ++L++ E + + +  W +  N+P I + +N A   L  + L E M+ LI
Sbjct: 356 NLLEETRLSHYLDLYVFEEVCKTLHRW-ELDNLPMIPVSVNFAGTTLRQDNLIEEMEKLI 414

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +       +++  SES    N E       ++RK  + + LD FG+K S  S L  + F
Sbjct: 415 DRYRVRCEYLEVEVSESYADMNQEMLAETSSKIRKANVRVILDHFGSKNSSFSILSLMEF 474

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S+++      +   + +++I + + +   ++A  +  +  +  L  +GCDY Q
Sbjct: 475 DGLKLDKSVISNLVGNRRSRLVAKAVIDICRQLGAVVMASGVETQDQVNVLEELGCDYAQ 534

Query: 937 DSHVASPLGFNSIL-KLLKE 955
            S     +   +   + LKE
Sbjct: 535 GSFFNKAITIETFEVRYLKE 554


>gi|158333902|ref|YP_001515074.1| EAL and cyclic nucleotide-binding domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158304143|gb|ABW25760.1| EAL and cyclic nucleotide-binding domain protein [Acaryochloris
           marina MBIC11017]
          Length = 439

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 162/367 (44%), Gaps = 20/367 (5%)

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS-----IGFASWTSSKI 668
           G+ FG + + + +    +  A  + ++  + I+  +    + AS     +  +       
Sbjct: 56  GDVFGEMAVIDASPRSASARA--LTETCCVVISREQISDRIEASDPVVKLLVSRLLDHIR 113

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
           + +  +  AE++     +                +++ ++ +L  A+  +     Y P++
Sbjct: 114 SLNTGVSQAEMSASDLPNSSVTSSSPVLPHQPVLEKMRLESELLDAIATNAFIPHYQPLV 173

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L  +EI+G E LI+W  P  G +S   F+  AEE  +I  I  +++E    D+  +   
Sbjct: 174 DLETKEILGFEFLIRWKSPTRGWVSPGLFIDTAEETSLILPIGRWVIENACTDLNRFNQA 233

Query: 789 ANM--------PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            N          P+FI +N++++     +  E +  ++ +     S+IKL  +E V+M  
Sbjct: 234 LNRSLGTSGKTRPLFISVNVSARQFQAPQFNEELLEILQRHQIPHSQIKLEVTERVLMEG 293

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
              +  ++ + R++G  L LDDFGT  S L+YL     D++K +   +       + +A+
Sbjct: 294 TS-AINIIQQCRQLGFHLALDDFGTGFSSLTYLAKFEIDSLKIDQYFVRQMLTHPRTLAL 352

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE--R 956
           ++ I+ M +++    +A+ +  + +   L R+GC   Q      PL F S   LL E  R
Sbjct: 353 MKHILAMTRDLRMVSVAEGVETQEEFDTLRRLGCQIGQGYLFGKPLPFESAQHLLLENYR 412

Query: 957 FPLVKNT 963
            PL   +
Sbjct: 413 RPLAPTS 419


>gi|291447944|ref|ZP_06587334.1| LOW QUALITY PROTEIN: phosphodiesterase [Streptomyces roseosporus
           NRRL 15998]
 gi|291350891|gb|EFE77795.1| LOW QUALITY PROTEIN: phosphodiesterase [Streptomyces roseosporus
           NRRL 15998]
          Length = 730

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 5/276 (1%)

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
            A       V   +  S   DR+ +  DL  A++  E+ L Y P +R  D ++ GLEAL+
Sbjct: 407 QAGTARAWEVYESKRDSNTPDRLGLLGDLRRALDAGEVELHYQPKVRF-DGQVAGLEALV 465

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP+ G +   EF+ IAE   ++  +  ++LE     +  WR Q    P  + +N++ 
Sbjct: 466 RWVHPERGRVPPDEFIAIAESSGLMPHLTEYVLETALAQVARWRAQGLFVP--VAVNVSP 523

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +D+       G+ A +++       ++L  +E V++ +P+R+   L  L   G+ ++LDD
Sbjct: 524 RDVHTPGFAGGVAARLARHGVPAGALQLEITEHVLLEDPQRAADTLAGLTAHGVKMSLDD 583

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S L +L  +P   +K + S +       +   I+R  I +A ++   ++A+ +  
Sbjct: 584 FGTGYSSLVHLRRLPVSELKIDRSFVARLAVDHEDAEIVRCTIDLAHSLGLVVVAEGVED 643

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +   + L  + CD +Q   VA+ +        L+ R
Sbjct: 644 DTTWERLRDLRCDAVQGWLVAAAMPPQETTAWLRAR 679


>gi|254503720|ref|ZP_05115871.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
 gi|222439791|gb|EEE46470.1| GGDEF domain protein [Labrenzia alexandrii DFL-11]
          Length = 685

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 187/473 (39%), Gaps = 17/473 (3%)

Query: 489 DNQFHWMIIRIRPMS-NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
           D       IR+ P+  +++GD    + I     +    +      A+QD LT + NR++F
Sbjct: 219 DADRKMCEIRLVPLPADASGDDAGMMAIIRRNVDCPHEIAENRRLAYQDPLTSLANRRAF 278

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
              L T L   + D++    V  ID+D++KK+ND+ G   GDD+L  +   +   L    
Sbjct: 279 TRALDTELQRLSRDESSGLAVFYIDLDEFKKVNDLGGHDAGDDMLQRVASSLALTLGEFG 338

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-- 665
             AR+ G+ F  +L + N    IA     +     + + + +R  T+  S+G A      
Sbjct: 339 TAARIGGDEFAGMLPAVNKEAAIAVAGEILDAFARIRLEVSDRVFTIGGSVGVAYAADWF 398

Query: 666 --SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC---LAVENSEL 720
                  + +L  A+ A    K  GG+ V+   V             +     + +  EL
Sbjct: 399 AVEGCDGAALLGLADRACLRGKRFGGHSVQVHTVRPQDWPAAGHGVGVMPEPGSFQAGEL 458

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   PII L   +  G E L++    +   +SS  ++  AE    I  ++ + L+++  
Sbjct: 459 ALYSMPIICLSRNKKCGAEILLRLQGDRSQGLSSKAWISAAERSGFIAQVDSWTLDKVLD 518

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
                 ++       + +N++++   D    + +   +S       R+ L  SE   +  
Sbjct: 519 AAERSANRT-----TLTMNVSAESARDTGFRDSLYQRLSVNPLLACRLCLEISEKDFLRE 573

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSL-LSYLGYIPFDTVKFNGSLMTG--STEKRIA 897
           P      +  +  +G    +DDF       LS L  +  D VK    +         + +
Sbjct: 574 PADISYFINFVSDLGCQTAIDDF-AGHWPVLSRLTGLRVDWVKLAAGVAQEALDNPAKAS 632

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +L++++  A+ +    IAK +  + +   L  +  +  Q  +   P  +  + 
Sbjct: 633 LLKALVGAARELGLKTIAKHVETKAEADFLRMLDIEAAQGFYFGRPEPWPEVA 685


>gi|218671626|ref|ZP_03521295.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 289

 Score =  294 bits (752), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/286 (27%), Positives = 138/286 (48%), Gaps = 11/286 (3%)

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLM 731
           +K ++LA+Y AK  G    ++F  +              L +A+   + Y+ Y PI    
Sbjct: 1   MKASDLALYTAKKEGRGRAKAFDPAMLELLEQRELLRRSLRMALVQQQFYVEYQPIA--E 58

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
              IVG EAL++W HP  G I  + F+ +AE   M+  I  ++LE+   + + W +    
Sbjct: 59  GGCIVGFEALLRWHHPLLGKIPPASFIPMAEADGMMPEIGAWVLEQACNEAMKWPENYL- 117

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
               + +N+++ + L + L + +   +      P R++L  +ESV++     +   L  L
Sbjct: 118 ----VAVNLSAAEFLTSGLTDRISQTLDLVGLPPERLELEITESVLLERTVNNIDTLNTL 173

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
             +GI ++LDDFGT+ S LSYL   PFDT+K +   +T         AI+R I+ +A ++
Sbjct: 174 NVLGIRISLDDFGTEYSSLSYLKTFPFDTIKIDKYFITDLETDLKSQAIVRCIVNLAHDL 233

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  + A+ +        L  +GCD +Q   V+ PL   +I   +  
Sbjct: 234 DMQVTAEGVETPGQADWLHSVGCDRLQGYLVSRPLAVEAIDDFITR 279


>gi|167755153|ref|ZP_02427280.1| hypothetical protein CLORAM_00658 [Clostridium ramosum DSM 1402]
 gi|237733423|ref|ZP_04563904.1| predicted protein [Mollicutes bacterium D7]
 gi|167705203|gb|EDS19782.1| hypothetical protein CLORAM_00658 [Clostridium ramosum DSM 1402]
 gi|229383458|gb|EEO33549.1| predicted protein [Coprobacillus sp. D7]
          Length = 980

 Score =  294 bits (752), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 163/416 (39%), Gaps = 12/416 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F+ + T I++ +    N    +M  D+  ++ +ND  G   GD  L+   + +  +    
Sbjct: 27  FVKQATDIIESNKNSKN--YVIMYADLTNFQLVNDFYGFIEGDRFLLEFAKFL-SMSPRT 83

Query: 607 DILARLSGNRFGII--LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
            +  R+  + F  +       +   +        ++          +  +  + G     
Sbjct: 84  ILCGRVFSDHFLRLSLFEDNCDIESVTRNYEQKLETFISSQEEHHPDSKIAVAAGLCPVK 143

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
             +    + +  A +A   AK      +  F     +       ++ ++  A+ N     
Sbjct: 144 LEEKAIIKAIDQANIARKEAKKDNHCKLVWFNEDMQKFINKRKILEIEIQNALRNKLFTF 203

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              P + +   +IVG EAL +        I   +F+ I E+   I  ++  + +++ R +
Sbjct: 204 YLQPKVNINTGKIVGSEALARLI-KDNKVIYPDQFIEIMEKNETIIDLDFLICQQVCRYL 262

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
               DQ     I + +N++   + +      +  +++K    P  ++   +E+V++ N  
Sbjct: 263 RERIDQGKKL-IPVSMNMSRMHVYETGFVARVNKIVNKYNIPPYLLEFELTETVILKNLT 321

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILR-- 900
           + R +   LR  G  +++DD+GT  S ++    + FD VK + S +T             
Sbjct: 322 KVREVADELRSFGYRVSIDDYGTGYSGMNIWQDLNFDIVKLDRSYITKRESNNNRNNIII 381

Query: 901 -SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +I+ +   ++TTII + +        + R GC+ +Q  + + P+      K++ E
Sbjct: 382 PAIVDICNKLQTTIICEGVETLDQCLYMKRFGCNVVQGYYFSKPVSTVEFEKMIDE 437



 Score = 53.8 bits (128), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 43/146 (29%), Gaps = 6/146 (4%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGP 448
                 Q      +  ++ +  +   +    I  D +     +  ++ I       +   
Sbjct: 714 QQMMLEQHCNEMEDNLNIVIENTPGDIVVIKIKDDHITTKFLSHGLSKIFDFEQSELTDI 773

Query: 449 IRN--WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           +++      ++ +DR+            +   + +++R    + +  W  I         
Sbjct: 774 LKHNKGFDLVYEDDREVLAKQFIELSKQKS-CVNFDYRSYYKNGKVSWHNINANFYRQEE 832

Query: 507 GDILRYIGIANDITEQKKSLEGILCN 532
              + Y GI  +I   K+  E     
Sbjct: 833 DGTIIYHGIITNINTLKEQQERAEKL 858



 Score = 42.6 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +  +  +  + G +   +      W   +  ++ +       + +  R  +   EF+++A
Sbjct: 489 LFVSDSLVELSGYSREELLSGGIEWPKKLFYSEEEFKHVFYHNGLADRSSKNLVEFKIKA 548

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            + +  ++ +    + +       Y+    D+T +K +       
Sbjct: 549 KNGKTVYINMYGGLVDSPEWG-SYYLCCFYDVTNEKVNELKSHEL 592


>gi|329907266|ref|ZP_08274586.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547058|gb|EGF31942.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 227

 Score =  294 bits (752), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 112/215 (52%), Gaps = 2/215 (0%)

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++W HP+ G +   EF+ +AE+  +I  +  ++LE   R +++W  Q  M  + I +N
Sbjct: 1   MLVRWQHPRRGIVPPVEFIPLAEQTGLILPLGQWVLETACRQLVAWTGQPAMASLTIAVN 60

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++  +   +    + A+I++T  +P  +KL  +ES+++ + E   L +  L+  G S +
Sbjct: 61  VSACQVQRPDFVAQVLAVIARTGANPQLLKLEITESLLLTDVEDIILKMSALQAHGFSFS 120

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LSYL  +P D +K + S +    S     AI+R+I+ +  ++  ++IA+ 
Sbjct: 121 LDDFGTGYSSLSYLKRLPLDQLKIDRSFVRDVLSDPNDAAIVRTILALGHSLGLSVIAEG 180

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           +  E     L  + C   Q    + PL      +L
Sbjct: 181 VETEAQCDFLADLDCHAYQGFLFSRPLPLAQFEEL 215


>gi|169343113|ref|ZP_02864138.1| GGDEF/EAL domain protein [Clostridium perfringens C str. JGS1495]
 gi|169298751|gb|EDS80826.1| GGDEF/EAL domain protein [Clostridium perfringens C str. JGS1495]
          Length = 775

 Score =  294 bits (752), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 105/457 (22%), Positives = 198/457 (43%), Gaps = 26/457 (5%)

Query: 509 ILRYIGIANDITEQK---KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           ++  + +  D+  +K   + +  +      D LT + +R  FL +L TI        N  
Sbjct: 326 LVMILLVCRDVILRKDNLRLIASVKRANEIDFLTNMYSRNYFLKKLETI--------NTD 377

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR---IGELLKFPDILARLSGNRFGIILI 622
             +  IDI  +K IN++ G  VGD VLV +  +   +  LL       R SGN F +I  
Sbjct: 378 YALFFIDIKSFKDINNIFGHVVGDKVLVEVANKFKELKLLLGKNVFYCRYSGNEFALI-- 435

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
             +   ++       R    + I      I +  +IG++    S I    +++  + A+ 
Sbjct: 436 --SKLNQVDLILKFFRDLENIKIQHNSDLIHINFNIGYSL-NDSNINLDLLIQETDYALM 492

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN----SELYLVYHPIIRLMDEEIVGL 738
            AK   G +             +     L    +N     + +LV+ P + +   +IVG 
Sbjct: 493 RAKKLKGPNNSILMYDDNLKTDLEHMNILKKDFKNDLLTGKFHLVFQPKVCVKTLKIVGF 552

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++W H K G IS  +F+ IAE L  I +++L++ ++         D+     +   +
Sbjct: 553 ETLLRWKHDKLGEISPCKFVPIAENLGEISSLDLYVFKKSCEFQRCLIDKG--IKLKCSV 610

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   E    +  +  +       I     E+V + N  ++   +  LR+ GI +
Sbjct: 611 NLSLNTLKSYEKINEILNIYKEYKIPKHLITAEILENVSLNNNAKTISYINLLRENGICI 670

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKD 917
           ++DDFGT  S LS +  + FD +K     +  + T  ++A++ +I  +AK ++   + + 
Sbjct: 671 SIDDFGTGYSSLSQISNLYFDELKIPREFVIDARTPSKLAVIEAISILAKKLKVISVIEG 730

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +    D K  + +G D IQ  + + PL  + I+  +K
Sbjct: 731 VENYEDFKLFSSLGFDIIQGYYFSKPLTKSEIIDYIK 767


>gi|167765704|ref|ZP_02437757.1| hypothetical protein CLOSS21_00192 [Clostridium sp. SS2/1]
 gi|167712612|gb|EDS23191.1| hypothetical protein CLOSS21_00192 [Clostridium sp. SS2/1]
 gi|291558745|emb|CBL37545.1| diguanylate cyclase (GGDEF) domain [butyrate-producing bacterium
           SSC/2]
          Length = 639

 Score =  294 bits (752), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 175/433 (40%), Gaps = 18/433 (4%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
                + D+LTG+ ++  F       +            +++ID+ K K++N + G+  G
Sbjct: 216 YNPQLYIDSLTGLYSKGYFRRWFPEQIKRKKE-----LHLLMIDLWKLKQVNKLYGVTTG 270

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           D++L+ +   + + +   + + R+ GNRF +   S  +     D  + +      P  + 
Sbjct: 271 DELLIQIAEYLHK-INEANHVFRIHGNRFFVFTTSLMDYETNKDAIMKL---FKRPFKVK 326

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
              I+ +A+I              ++   E  +          +      +        +
Sbjct: 327 GERISFSAAICGIINVQEVKEIDVLIDYLEYLVQLKPKSDRTILIQNDQHTKEGFLYEQE 386

Query: 709 --EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             + +  A+E     + Y P+  L ++    ++AL +  HP  G IS   F+ IAE+   
Sbjct: 387 VKKYMATAIEEDLFEVYYQPLYDLKEKRYRTMKALSRLRHPSLGMISPEVFIGIAEKHGQ 446

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILI--NIASKDLLDNELCEGMQALISKTLYS 824
           I  +      ++ + I               I  N++  +LL +   + +   I +    
Sbjct: 447 IAKLGYLQFRKVCKFIKEHPQIMEKIE---SIKYNLSPLELLKSGYSKKLLRTIEEFDIP 503

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S  +   +E+V     E     +   +K GI + LDDFG+  + L+ +  +PF T+K +
Sbjct: 504 FSYFQFEITETVATEYSEALYQTIADFKKSGIQICLDDFGSGYANLNTVLKLPFSTIKLD 563

Query: 885 GSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            SL+ G        L  ++I+ + +N+   ++A+ +  + +I  L + G D +Q  +   
Sbjct: 564 RSLLNGICYDDQVALLYKNIVAVMQNLGHKVVAEGVETQEEIDLLKQWGVDLVQGYYYTK 623

Query: 943 PLGFNSILKLLKE 955
           PL    I+  L++
Sbjct: 624 PLDSEQIIHKLEK 636


>gi|310780585|ref|YP_003968916.1| diguanylate cyclase/phosphodiesterase [Ilyobacter polytropus DSM
           2926]
 gi|309749908|gb|ADO84568.1| diguanylate cyclase/phosphodiesterase [Ilyobacter polytropus DSM
           2926]
          Length = 550

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 92/425 (21%), Positives = 183/425 (43%), Gaps = 27/425 (6%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            +T +PN++ F +++    D           V VI  ++Y K+ +  G    +D +  ++
Sbjct: 135 PITNLPNKKYF-EKMDMKWDYHDR-------VAVIKFEEYYKMIESYGEDYANDFIKKIS 186

Query: 597 RRIGELLKFPDILA------RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
               E+      +A       L  ++  ++           +    + +SI       E 
Sbjct: 187 SIFVEIFNDDRRIADRPNVFHLDEDKLAVVFSELETKDNFKNVFKRIYRSIKS----KEL 242

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKE 709
                  IG +    S     ++++NAE A   A K      + S ++S   ++   +  
Sbjct: 243 NHFPGVFIGISECNESNT---KIIQNAETARRSARKDLKLYKIYSPKLSEKSNENFDLSM 299

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+   + +L YHP I L   E+ G+EALI+W+H + G I+   F+   E+  MI  
Sbjct: 300 EIPRALNERQFFLCYHPKINLRSGEVEGIEALIRWNHAERGFIAPDNFIPHIEKTSMINK 359

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L+    +I +   +       + +NI  K L +  +   +++   K      +++
Sbjct: 360 VTEWVLKTSFSEIKNMESENIDVN--VSVNIPLKILENPIIVRYLKSY-KKKQLPLQKLE 416

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L   E   + + E +   +  L+K+GIS +LDD+GT  S LSY+  +PFD +K +   + 
Sbjct: 417 LEILERDNVEDFEITASAVKTLKKMGISFSLDDYGTGYSTLSYMQNLPFDKIKIDRMFIK 476

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     I+RS I +   +   ++A+ +  +  ++ L  MGCDY Q  +   PL + 
Sbjct: 477 DIETNGNTREIVRSTIGIVHILGMEVVAEGVETKETVEILKNMGCDYAQGYYYTKPLAYR 536

Query: 948 SILKL 952
             +  
Sbjct: 537 EFIDW 541


>gi|254459023|ref|ZP_05072446.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207084294|gb|EDZ61583.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 719

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 184/430 (42%), Gaps = 33/430 (7%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            L+      + D+LTG+ NRQ+  D L                +++ +I ++  +N++ G
Sbjct: 306 MLKHFTKQVYTDHLTGLSNRQALNDAL---------YSGESNVLILSNIKEFSLLNELYG 356

Query: 585 IAVGDDVLVSLTRRIGELLKFPDIL-ARLSGNRFGIILISENNSLKI-ADFAIAMRKSIA 642
           + VG++VL+ +     +          R+S + + ++    N   ++ +DF   +  +I+
Sbjct: 357 VDVGNEVLLQVAHEFEKFGVEHGFNSYRVSSDEYVLLKEDSNFEAEVYSDFLDELHNNIS 416

Query: 643 M-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---VS 698
             PI + + E T+   I        + +  E    A++A+  AK +   ++   +     
Sbjct: 417 TLPIYIGKIEETLRVEIYSGLAFDHEHSLEE----AQMALRKAKEKSLPYLAYSQSVDTK 472

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG---NISSS 755
                 + +K  +  A+E+  +   + PI    +  I+  EAL++    + G    I   
Sbjct: 473 KNSERILGMKRVIRHALEHKNVIPFFQPITD-KNGNIIKYEALVRIVDFENGEKSIIFPD 531

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +A +  +   +   ML +                  I +N    D  +  L + + 
Sbjct: 532 DFLPVAIKSGLYIEVAQEMLSQALSFFS-------DRDEKISVNFLPNDFFNYALMDKLV 584

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            LISK   S  +I +  +E   + + +R   ++ RLRK G+ + +DDFG+  +  +++  
Sbjct: 585 TLISKFKTS-GKIVIEITEQEGIEDFDRLVRVVERLRKQGVLIAIDDFGSGYANYAHILR 643

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           I  D +K +GSL+           +++SII  AK++ET  IA+ +  E   + L   G D
Sbjct: 644 IKPDYLKIDGSLIKNILNDNDSKILVKSIIRFAKDLETKTIAEYVENEEIFELLKEYGVD 703

Query: 934 YIQDSHVASP 943
             Q  +   P
Sbjct: 704 EFQGYYFGRP 713


>gi|253998116|ref|YP_003050179.1| diguanylate phosphodiesterase [Methylovorus sp. SIP3-4]
 gi|253984795|gb|ACT49652.1| diguanylate phosphodiesterase [Methylovorus sp. SIP3-4]
          Length = 473

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 129/259 (49%), Gaps = 3/259 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           + +  S R  +  D+  A+   +  L Y P +      I G EAL++W HP  G I    
Sbjct: 197 MQTDISTRHSLYADMRAALAQGQFRLHYQPQVD-AVGNIFGAEALLRWQHPVRGMIPPGV 255

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AEE  +I+ I  ++L+     ++ W    NM  + I +N+++  L   +  + +  
Sbjct: 256 FIAAAEETGLIQPIGTWVLKEACAQLVKWSKDPNMAHLSISVNVSASQLRQPDFVQEVIE 315

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ ++  +P+++KL  +ES++  + + +   +  LR  GIS +LDDFGT  S L+YL ++
Sbjct: 316 IVMRSGATPAQLKLELTESMLAKDVDTTIQKMKALRAFGISWSLDDFGTGYSSLNYLKHL 375

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PF+ +K + S +      E   AI+ +++ ++KN+   +IA+ +     +  L   GC  
Sbjct: 376 PFEQLKIDQSFVRDLLTNESDKAIVETLVVLSKNLNMMLIAEGVETTEQLNYLLNKGCMK 435

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    + PL   +    +
Sbjct: 436 YQGYLFSRPLSIEAFEAFM 454


>gi|291279600|ref|YP_003496435.1| hypothetical protein DEFDS_1211 [Deferribacter desulfuricans SSM1]
 gi|290754302|dbj|BAI80679.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 564

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 190/460 (41%), Gaps = 42/460 (9%)

Query: 515 IANDITEQK--------KSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           IA D+ E+K              L +A   D LTG+ N   F   L  ++       N  
Sbjct: 129 IARDLLEEKVINFAENLSLKNKELFDAIYSDTLTGLYNINYFKSYLNDLIQK-----NEN 183

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             +++IDI ++   N   GIA GD +L  L   + E L   +++ R+  + F I     +
Sbjct: 184 GILLLIDIYQFTHFNKTYGIATGDLILKHLGAMLKEKL-SNELIFRIGSDEFAIYYKHIS 242

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           N    +  +  +   I   IN  ++  ++  +IG  + T SK  + E+L+ A +A+  AK
Sbjct: 243 NEKLTSILS--VIDFIFKNINTGDKVWSIPYNIGIVTSTESKKNAEELLEMASIALKKAK 300

Query: 686 HRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +G N    +  +  +    +I     +  A++N      Y P     +  I G EAL++
Sbjct: 301 LKGANSHVFYEDNIEKEFSKIIFARELISKAIKNKLFIFQYQPYYDPYNLSIKGFEALVR 360

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
                    S   F+   E    +      +L  I +    W        + +  NI+ +
Sbjct: 361 IKDGD-EIYSPYLFIEELERSEFLSDFEDILLTEIKKVTEKW-------NLPVSFNISPR 412

Query: 804 DLLDNELCEGMQAL-ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI---SLT 859
              +  L + ++ + ++K         +  +E +++ N + +  ++  ++        + 
Sbjct: 413 SF-NLNLLKKLKDVGLTKLG------TIEVTERLLLENIDEAIEVMDNIKN--FTTLKIA 463

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L YL  +P D +K + + +     + K  A++  +I + K I  T +A+ 
Sbjct: 464 IDDFGTDYSSLKYLKDLPIDILKIDITFVRSMLDSLKDRAVVEVLIELCKKIGVTSLAEG 523

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +     +  L  MG D +Q   +A P+    +  LL++  
Sbjct: 524 VENNSQMDMLKNMGVDLVQGFLLAKPMFEFQVDTLLEKNN 563


>gi|162447869|ref|YP_001621001.1| surface-anchored signal transduction protein [Acholeplasma
           laidlawii PG-8A]
 gi|161985976|gb|ABX81625.1| surface-anchored signal transduction protein [Acholeplasma
           laidlawii PG-8A]
          Length = 801

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 195/467 (41%), Gaps = 18/467 (3%)

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
            IR+R + N      + IG   D T         L     D+  G+ N+ +  + + T+ 
Sbjct: 344 KIRVRFLVNKYARNYQLIGEIIDSTSNVLDKYKDLALTHPDS--GLKNKLALEEMIETL- 400

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                +   R +++VI I  + +I+  +G     +V   L       +     L  +  +
Sbjct: 401 -----NRKDRFSLIVIGIKSFDEISKSIGRQKSQEVNKVLIELFQSKMYPNMYLFHIEKH 455

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS--EM 673
            F I+   + N      +A  M + +   I L +  + +   IG      +   +S  E+
Sbjct: 456 EFVILQQKDVNYDVTVGWAKQMMELVDTKILLPDLPVKLELLIGIVHNKGTITNASTKEI 515

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLM 731
           L   ++    A     N++  +             ++ D+   +EN E  +   P   L 
Sbjct: 516 LDAVDVTYERAIVSTTNNLMIYTERYLDLRNRANQLEIDIRKGIENDEFQMYMQPQYDLH 575

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
           ++ +VG E L++W +PK+   S + ++  AE+  +I  +   + +++ R   S       
Sbjct: 576 EKRVVGFELLLRWHNPKYIKESPATYIRQAEKSNLIIDLGRVINDKVFRIAKSLE----G 631

Query: 792 PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRL 851
             I +  NI+ + LL       + AL  K    P RI +  +E++++   +        L
Sbjct: 632 MDIDVSFNISPRQLLQPGFINELIALKDKYQVDPGRIAIELTETLLILQMDVIVEKFNAL 691

Query: 852 RKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNI 909
           +++   + LDDFGT  S L+YL  +P D +K +   +     + K   IL+++I + KN+
Sbjct: 692 KELNFKIQLDDFGTGYSSLNYLKRLPIDNIKIDKLFVDEIETSSKARQILKTMIALGKNL 751

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  +I + +  +  ++++ +     IQ  +V+  L      + +K++
Sbjct: 752 KMGVIIEGVETDKQVEQIRKESTAIIQGFYVSQALPEKEAFEFIKKK 798


>gi|238922195|ref|YP_002935709.1| hypothetical protein EUBELI_20430 [Eubacterium eligens ATCC 27750]
 gi|238873867|gb|ACR73575.1| Hypothetical protein EUBELI_20430 [Eubacterium eligens ATCC 27750]
          Length = 449

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 167/411 (40%), Gaps = 12/411 (2%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F +++  I+  +         ++ +DI  +K IND  G+  GD V+  +      + +  
Sbjct: 32  FNNKVKDIIHKNEHS----VVLLALDISNFKYINDFYGMDEGDKVMQDIADYYF-INEPL 86

Query: 607 DILAR-LSGNRF-GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
            + A  +  ++F G   +       +  +     +     ++     +     +G   + 
Sbjct: 87  CLAAHGIGFDQFRGAYNVDGMTQEDVVSYITKKNEKFEAELSERYPLVYQHVYVGLYFYD 146

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSSFRSDRVMIKEDLCLAVENSELYL 722
           + ++     +  A LA    K R   H   +     +   + + +  +   A   + + +
Sbjct: 147 NHELDVRMAVDRANLAKKSTKGRFDIHCCIYSEDNCNEYLEHMDMSNEFVHAYNENRIEI 206

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              P I + + + VG EAL++  + +   I    F+ + E   MI+ ++  ML++     
Sbjct: 207 FLQPKISVSEGKAVGAEALVRMRNKEGELIPPVRFVPVLEHTGMIEKLDDIMLDKTFAFQ 266

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
               +     P+ I +NI+ +    + L   +  L  K     S ++L   E+  +   +
Sbjct: 267 RECINNGIR-PVPISVNISRQRFTSDGLLGYVMELQQKYDIDASLVELEILETTFIDALD 325

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
                +  LRK G  + +DDFG+  S L+ +  IP D +KF+    + S   +K   +++
Sbjct: 326 AMTDAINALRKQGFRINVDDFGSGYSSLNQIANIPADVIKFDRVFASRSLKNDKGRQVIK 385

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           S+I M K +   ++ + +  + ++  +   GCD IQ  +   PL     ++
Sbjct: 386 SLIQMLKMVNYELVFEGVETKEELDTVVSYGCDVIQGFYFDKPLPAKEFIQ 436


>gi|293401597|ref|ZP_06645739.1| putative diguanylate cyclase (GGDEF) domain protein
            [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304855|gb|EFE46102.1| putative diguanylate cyclase (GGDEF) domain protein
            [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1712

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 180/427 (42%), Gaps = 23/427 (5%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            K  +  L   + D L+G  NR S+      +++       +   V+ +DI+  + IN + 
Sbjct: 1306 KLQKKQLYMHYHDYLSGALNRASYQQYRQELMEERL----ISLGVVSLDINGLRDINHLY 1361

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G A GDD++  +   + ++    + + R +G+ F +I+   +N     +  + ++K +  
Sbjct: 1362 GNAYGDDIIRRIAHLMEKIFVNGN-VYRFTGDEFLVIVEDMSN-EMFTNHVVKLQKRMQK 1419

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                         SIGF  W+ +     E++ +A+      +        S+        
Sbjct: 1420 ---------ICDVSIGFV-WSDTNKQLDELIAHAD----EQRLINKQFNYSYLQGEHAKH 1465

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
               + + +   ++     +     +      I+G EALI++       ++ + F+ + E+
Sbjct: 1466 NTHVLKGILKEIKEGRFQVYLQKKVNSQTNAIIGAEALIRYQDADGTIVAPNRFIPMLEK 1525

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
            L +I  I+ F+  ++   +  W  +     + I +N +   LL++ L + M  +      
Sbjct: 1526 LGIIHYIDFFVFRQVHEILCKWEKE-GKACVPISLNFSRVTLLEDNLAQRMSNISESYAC 1584

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              + I++  +ESV              +++ G  L+LDDFG+K S +++L  + F+ +K 
Sbjct: 1585 KRAWIEIEITESVGDIERTTMEKKCKEIKEAGYRLSLDDFGSKYSNIAFLSSVKFNVLKL 1644

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +  LM       K  AI+ S++ +   ++  ++A+ +     ++ L  +GC  IQ  +  
Sbjct: 1645 DKGLMDDIISNHKARAIISSMVELCAALQIEVVAEGVEYAEQVEILKTLGCYLIQGYYYG 1704

Query: 942  SPLGFNS 948
             P+    
Sbjct: 1705 KPIPSQE 1711



 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 140/315 (44%), Gaps = 9/315 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-- 454
            Q +    +R +  +  + DIV+++D+    +  + +     G     + G   +     
Sbjct: 132 EQALQLSDKRLAFLLSLTQDIVFEYDVTAKEIYYSENFERKFGYQIP-VTGFPDSLFEAN 190

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I+  D    R    S + + +  ++ E+R++  D  + W+  + R + + +G +++ +G
Sbjct: 191 IIYQEDVSTLRDAFQSML-HGKDAMRCEYRLKYQDQGYRWVFAQARALRDQSGKVMKILG 249

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  DI EQK  +      A  D LTG+ NR+  + R+   +             ++ID+D
Sbjct: 250 VIMDIHEQKNEILKSRKEAALDPLTGLYNRRECVRRIEEYISKHEQ----LMAFILIDVD 305

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND  G  +GD+ L  L   + +L++  D  AR+ G+ F + L +  +        
Sbjct: 306 DFKLVNDRYGHTIGDETLFFLGEALQKLIRKKDTAARIGGDEFVVCLNAIPHEDVAITKI 365

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
            A+++  +  + + +    V  SIG + +     +  ++L+ A+ AMY AK  G N    
Sbjct: 366 KAIQQMFSHHM-MQKLHHEVNCSIGISYYPKHGKSFHQLLEAADRAMYQAKKEGKNRYSV 424

Query: 695 FRVSSFRSDRVMIKE 709
           ++    +    ++ +
Sbjct: 425 YQSQKEQHSYAILNQ 439



 Score = 96.9 bits (240), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 117/336 (34%), Gaps = 23/336 (6%)

Query: 458  INDRDNF-----RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              DR  F        L +     +  +  E+R +  +    W+    R   ++    L  
Sbjct: 888  EEDRLRFLHLLNMEALQNAYAQGKSLINCEYRCKDENGHLFWVNSVGRLFMDAKNGDLYL 947

Query: 513  IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
             GI  +I ++KK    +      D    +    +F + L   L             ++ +
Sbjct: 948  HGILVNIDDRKKIELALKKKPEMDVFPNVYKENTFKEVLKETLKQPKKVQEKE-AFLLFE 1006

Query: 573  IDK---YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            ID    + +I D+ G+     +   L   +        I+ R+    F + L SE     
Sbjct: 1007 IDHESEFSRI-DMAGVE---RIQEELAALLLTGFACRKIVGRMEDGTFALWLCSEATKQD 1062

Query: 630  IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
            I      +RK+I +P    +    VT S G         TS E+   A   ++ AK +GG
Sbjct: 1063 ICAIVEYIRKTIGIPYMFSDMNFKVTLSCGIILL-HQPKTSDELFHIAFDTIHQAKEKGG 1121

Query: 690  NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI----VGLEALIQWD 745
            N      V       + ++E       + ++ L     + L           +E L+++ 
Sbjct: 1122 NCYVLKEVEQPLPQPLTMQELFTGDKASEDMLLKTLYSMNLEKSFTKALYRAVEQLMRYY 1181

Query: 746  HPKWG-NISSSEFMLIAE--ELCM--IKAINLFMLE 776
                   I  S+ M + E  +  M  IK +N ++L+
Sbjct: 1182 GGDRAYLIDYSDTMQLYEVRKDGMDSIKELNEYILQ 1217



 Score = 61.5 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 2/117 (1%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDS 470
            GS   +   D              +L +    M       W+  +  +DR   + +L +
Sbjct: 583 RGSAVFIITLDAAFTLRYANASFYELLEITPQQMQDTYHMQWIHMVQQDDRKRVKKLLQA 642

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            +      ++ EF V        W+        + +    +  GI  D T +   +E
Sbjct: 643 ALKQEETTIKCEFLVTTGKGNQKWLFFSGALEQDEH-QQWQMKGIMLDHTREHALME 698



 Score = 60.3 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 43/154 (27%), Gaps = 11/154 (7%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            ++          + +         A+  +   VW++DI +  +  + +     G    +
Sbjct: 685 GIMLDHTREHALMEALTHKEMVYRTALEEAQICVWEYDIDKKIMYMSEN-----GKDRHA 739

Query: 445 MHGPIRNWLP------YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           M    RN          IH       + +            +     +   + + W  + 
Sbjct: 740 MQTITRNMPEALQKQHLIHPESWPTLKDMYVQLENGVPYIQRDILTAKKNHDGWWWERVT 799

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              + +        + +  D+T+QK +       
Sbjct: 800 YTTIYDQQKKARYAVAVGEDVTKQKTAQAYYQHQ 833



 Score = 42.2 bits (98), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 6/128 (4%)

Query: 403 DGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSM--HGPIRNWLPYIHI 458
           D            D +  W +           ++  +LG             ++L  I  
Sbjct: 448 DEAMVQFMADSVLDGMIGWYVKEGFPIYYINDNMLKLLGYEDEKTYREAVNGHFLETILA 507

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
            DR   +  +   +  ++  L   FR+    NQ  W+  + + +  S  +      +  +
Sbjct: 508 KDRLKTKQSIREQLQTKQEFLVS-FRICDRFNQVIWISGKGKRIHYSE-EQDAVFMLCVN 565

Query: 519 ITEQKKSL 526
           I +QK   
Sbjct: 566 IQKQKTCE 573


>gi|313899537|ref|ZP_07833046.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. HGF2]
 gi|312955644|gb|EFR37303.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. HGF2]
          Length = 402

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 160/397 (40%), Gaps = 9/397 (2%)

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             ++MV+ +  ++ IND      GD +L  +   + + L     + R SG+ F I+    
Sbjct: 6   PYSMMVLSLKGFRFINDHFSQKAGDVLLTRICAFLEKEL-PAVRVFRFSGDEFAIV---C 61

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            ++         +   +    ++   +  +   IG     +      E++K  E A+  A
Sbjct: 62  KDAETCRQCHTQLIARMRQSWSVENFDFRIQYGIGILHVEAHNRDKDEIIKGLEYAVMLA 121

Query: 685 KHR--GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        V +  +         + E L   +      +VY PI  + ++     EAL+
Sbjct: 122 KRSEENRTCVCTADMIERLHRNERVLELLRQCIREDSFIVVYQPIYDVKEQAYTKAEALL 181

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +      G +   EF+ +AEE  +I  I   +L +    +   +  A      I +N ++
Sbjct: 182 RLPPHDLGQLGPDEFIPLAEENGLITEITYQVLRKTCLFLQQLQHTATTLK-SISVNFSA 240

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
              L  +L   +  +I +       +++  +ES++  +       + R+RK GI   LDD
Sbjct: 241 VMFLQQDLGNNILKIIEEYKIPVHMLQIEITESMLSRDYHMIIAFIQRMRKQGIEFLLDD 300

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S +S +  +P  T+K + SL+     + +   +LR +      +   ++ + +  
Sbjct: 301 FGTGYSNISNVLSLPIQTIKIDKSLLWKAMVSTEGAVVLRKMCEAFHEVHQLLLVEGVEN 360

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           E     +    C YIQ  + A+PL    + KLL ++ 
Sbjct: 361 EEQAAFVRDCACRYIQGYYYAAPLPQEQVYKLLIQKQ 397


>gi|260770132|ref|ZP_05879065.1| GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260615470|gb|EEX40656.1| GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 638

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 179/449 (39%), Gaps = 11/449 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I ++K + + +      D  T   N       +   L     D      ++ +     
Sbjct: 187 QEIDKRKAAEQLVAFQLHHDTSTAFFNHSGLEREVDKALTRGDHD----LALLYVGFANA 242

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + +   LG    + VL     R+G       + AR + N   +++ + +    +      
Sbjct: 243 RHLQSRLGYQNWEKVLKRYRERVGHFEGIEILTARPTANDLVLLVKAPSLENSLELLCHR 302

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +         L +    + A IG A+  +    + E++  A  AM   K  G       +
Sbjct: 303 LVGIHQAEFQLEQERFHLNAYIGIAT-HADSAHAGELIHFASEAMLACKDSGYQFHYHSQ 361

Query: 697 VSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S+ +      ++  L  A++N +L L + P +       +G + +++W HP  G+++  
Sbjct: 362 SSADQLASANALESYLLQALQNDDLALYFQPKVDPRSRRWLGAQTVLRWSHPLLGDVTHE 421

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  ++  +  F+L         WR       +   I  ++  L + +L + ++
Sbjct: 422 ALINMAEQNGLMFEVGNFVLRHTIEMAGRWRHSFPSLRLTAAI--STGQLQNGQLAQQIE 479

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL++     P+++ L  +E+ ++ +   +R  L  L ++G+ LTL +FG+  +   +L +
Sbjct: 480 ALLNAHDVPPAQLDLEINENALLSDEVVARNTLSALHQLGVHLTLSEFGSGFASFHHLKH 539

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + + +      ++   ILRS+I +A+ +   +  + +            GCD
Sbjct: 540 YPFDAIKLDKTFVQQLTHNDEDEEILRSVIHVAQKLHLQVGVEGVDTPEQDTFFIEEGCD 599

Query: 934 YIQDSHVASPLGFNSILK-LLKERFPLVK 961
             +      PL        +L + +   K
Sbjct: 600 IAEGYLYGRPLPTEEFELVMLNQSYSFAK 628


>gi|220906983|ref|YP_002482294.1| diguanylate phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219863594|gb|ACL43933.1| diguanylate phosphodiesterase [Cyanothece sp. PCC 7425]
          Length = 505

 Score =  293 bits (751), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 135/261 (51%), Gaps = 2/261 (0%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
            S     + I E L  A++  E  + Y PI+ +   ++VG EAL++W HP+ G I   EF
Sbjct: 231 HSHPLFELPILERLQRALKQEEFQIYYQPIVEVDSLKVVGFEALVRWFHPEQGLIPPIEF 290

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AEE   I  ++ ++L R    ++ W+ + N   + I +N++S+ L  ++L E +Q +
Sbjct: 291 IPTAEETGFILELDQWVLRRSCEQLMQWQKEFNNSSLSISVNLSSQHLNKSDLVERVQDV 350

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  T  +P  +KL  +E  +    E +  +L RL+++ + L LDDFGT  S LS L   P
Sbjct: 351 LEATTLNPRCLKLEITEGAIGEQSEIACQILERLQQLNVGLNLDDFGTGYSSLSRLQDFP 410

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K + + +    + R A  I+R+II +A N+   ++A+ +     +  L  +GC Y+
Sbjct: 411 LNALKIDQAFVQRLGQTREAAEIVRTIIHLAYNMRMEVVAEGVENSEQLDILRSLGCQYV 470

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q  +   PL       LL  +
Sbjct: 471 QGYYCYKPLSGQQTAALLSNQ 491


>gi|315186602|gb|EFU20361.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Spirochaeta thermophila DSM 6578]
          Length = 1046

 Score =  293 bits (751), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 102/593 (17%), Positives = 204/593 (34%), Gaps = 67/593 (11%)

Query: 397  SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
             +   +           + + +   D   +     P    I G +     G     L   
Sbjct: 483  EREYRTSLLLFRWIFEHAYEGMVVTDEEGNIEMVNPAFTDITGYSEEEARGKTPRILKSD 542

Query: 457  H--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            H      +     L       +G    E   R    + +   + I   +++ G +  Y+G
Sbjct: 543  HHPPELYERMWHDL-----TTKGWWADEIWNRRKSGEVYPEWLSISRFTDTEGKV-HYVG 596

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            I ++I++QK+  E +   A+ D LT +PNR    DRL      +  +   +  ++ +D+D
Sbjct: 597  IFHEISKQKELEERLRYLAYHDALTDLPNRFLLEDRLERECARARREGK-KVGLIFVDLD 655

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K++ND  G   GD  LV +   + E  +  D +AR++G+ F I+L             
Sbjct: 656  NFKQVNDTFGHRTGDLYLVHVAHLLREACREVDTVARIAGDEFVIMLPGLAQKAFALSVL 715

Query: 635  IAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + + +   P       + V+ S G A +     ++SE+L  A++A+Y AK +G N   
Sbjct: 716  ERIFRGLREQPFQHENTTLEVSLSAGLAFFPDDGGSASEILSRADIALYRAKRQGKNQYA 775

Query: 694  SFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALI-QWDHPKWG 750
             F+    +     +     L  A+    + + + P        I  LEAL+     P   
Sbjct: 776  IFQREDQKVIEEQLGRYDLLRKALAGRTVKIDWEP-WENRSGRIAYLEALLSCGKDPTLE 834

Query: 751  NISSSEFMLIAEELCMIKAINLFMLE--RIARDIISWRDQANMPPIFILINIASKDLLDN 808
                   + +AEE+ +   +   ++E           R         ++  I S  L D+
Sbjct: 835  ---PGAILTMAEEVNLGGTVGELIVEGMATLLHGARKRAIPPGTIPPLVARIPSSLLFDH 891

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL---------- 858
                 ++ +       P  + L       M  PE     +  +R +G ++          
Sbjct: 892  SFLSTLRDMGEAYELPPGHLILLLPFRSGML-PEHLIRAVEEVRTMGFTVGPPGPWIPLD 950

Query: 859  ----TLDDFGTKCSLLSYLGYIPFDTVKFNGSLM----------TGSTEKRIAILRSIIP 904
                 +              ++P          +              E   + L+++I 
Sbjct: 951  PRDEAI--------------HLP---------FVLLPYRRLLAFRNEVEGSESSLKALIH 987

Query: 905  MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            + +     ++ + +  E  +  +  +G D      V   L    +L LL+E  
Sbjct: 988  LMRYRNQKVVVEGVDDEGGLSWIWELGADLAAGPGVHGRLPAEQVLPLLREHL 1040


>gi|315182646|gb|ADT89559.1| GGDEF family protein [Vibrio furnissii NCTC 11218]
          Length = 638

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 80/449 (17%), Positives = 180/449 (40%), Gaps = 11/449 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +I ++K + + +      D  T   N       +   L     D      ++ +     
Sbjct: 187 QEIDKRKAAEQLVAFQLHHDTSTAFFNHSGLEREVDKALTRGDHD----LALLYVGFANA 242

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           + +   LG    + VL     R+G       + AR + N   +++ + +    +      
Sbjct: 243 RHLQSRLGYQNWEKVLKRYRERVGHFEGIEILTARPTANDLVLLVKAPSLENSLELLCHR 302

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +         L +    + A IG A+  +  + + E++  A  AM   K  G       +
Sbjct: 303 LVGIHQAEFQLEQERFHLNAYIGIAT-HADSVHAGELIHFASEAMLACKDSGYQFHYHSQ 361

Query: 697 VSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            S+ +      ++  L  A++N +L L + P +       +G + +++W HP  G+++  
Sbjct: 362 SSADQLASANALESYLLQALQNDDLALYFQPKVDPRSRRWLGAQTVLRWSHPLLGDVTHE 421

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             + +AE+  ++  +  F+L         WR       +   I  ++  L + +L + ++
Sbjct: 422 ALINMAEQNGLMFEVGNFVLRHTIEMAGRWRHSFPSLRLTAAI--STGQLQNGQLAQQIE 479

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL++     P+++ L  +E+ ++ +   +R  L  L ++G+ LTL +FG+  +   +L +
Sbjct: 480 ALLNAHDVPPAQLDLEINENALLSDEVVARNTLSALHQLGVHLTLSEFGSGFASFHHLKH 539

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            PFD +K + + +      ++   ILRS+I +A+ +   +  + +            GCD
Sbjct: 540 YPFDAIKLDKTFVQQLTHNDEDEEILRSVIHVAQKLHLQVGVEGVDTPEQDTFFIEEGCD 599

Query: 934 YIQDSHVASPLGFNSILK-LLKERFPLVK 961
             +      PL        +L + +   K
Sbjct: 600 IAEGYLYGRPLPTEEFELVMLNQSYSFAK 628


>gi|134047143|ref|YP_001102033.1| EAL domain-containing protein Urf2 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|237640327|ref|YP_002891182.1| Urf2 [Escherichia coli]
 gi|237810062|ref|YP_002894502.1| Urf2M [Escherichia coli]
 gi|237810242|ref|YP_002894681.1| Urf2M [Salmonella enterica]
 gi|40795487|gb|AAR91467.1| unknown [Klebsiella pneumoniae]
 gi|133905062|gb|ABO41077.1| EAL domain protein Urf2 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|229561546|gb|ACQ77749.1| Urf2 [Escherichia coli]
 gi|229561726|gb|ACQ77928.1| Urf2M [Salmonella enterica]
 gi|229561918|gb|ACQ78119.1| Urf2M [Escherichia coli]
          Length = 329

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  AVE  +L L Y PI+ L  E+IVG EAL++W HP  G +   +F+ + E   ++ 
Sbjct: 12  AQLAQAVERGQLELHYQPIVDLRSEQIVGAEALLRWRHPTLGLLPPGQFLPVIESSGLMP 71

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R +  WR      P  + +N+++  +   +  + ++ +++      + +
Sbjct: 72  EIGAWVLGAACRQMRDWR-VLAWQPFRLAVNVSASQVG-PDFDKWVKGVLADAGLPAAYL 129

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S +
Sbjct: 130 EIELTESVAFGDPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFV 188

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G     +   I+R++I +A  +   ++A+ +     +  L +  CD  Q    A P+  
Sbjct: 189 AGLANDHRDQTIVRTVIQLAHGLGMEVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPA 248

Query: 947 NSILKLLKE 955
            +    + +
Sbjct: 249 AAFAVFVSQ 257


>gi|103487139|ref|YP_616700.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
 gi|98977216|gb|ABF53367.1| diguanylate cyclase/phosphodiesterase [Sphingopyxis alaskensis
           RB2256]
          Length = 398

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 176/420 (41%), Gaps = 37/420 (8%)

Query: 548 LDRLTTILDLSAT-------DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           ++RL+  L   A          +    V+++ +D+  +IN+  G A GD VL  + RR+ 
Sbjct: 1   MNRLSESLTACARKIESQHLRHDRDAGVILVQVDQMARINNSAGTAAGDAVLDEIGRRLE 60

Query: 601 EL----LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
                       + RL G RF I+  +      +     A+  ++A PI + +    ++ 
Sbjct: 61  NFAGDEFGPGSCVERLDGPRFLIVPATPLALGALRAQERALHVALAEPI-VGDPNGRLSI 119

Query: 657 SIGFASWTSSKITSSEMLKNAE-LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            I  A  T  +  + ++L+  + LA   +   G                      +  A+
Sbjct: 120 RIATALITRDESVAEQLLQACDQLARPASARDGAM--------------------VHAAL 159

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              E+ + Y P   ++   + G+EAL++W HP+ G + +   +  A    +   +     
Sbjct: 160 SRDEVVIHYQPQYDVVTGAMTGVEALLRWQHPELGLLGAGPLVTAARAARLECELTEHAH 219

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
                ++  W  Q     + + +NI + DL D E  E   A++      P R+ L  +E 
Sbjct: 220 RVALAEMAGWPRQLAQ--LRVSLNITAADLGDPEFAERFAAMVRAAKVDPDRLTLELTEQ 277

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--E 893
            ++ +P  +   L ++R +G ++ +DDFGT  S LS L  +P D +K +          +
Sbjct: 278 AMLSDPASAAEHLAQIRALGCAIAIDDFGTGYSSLSLLARLPIDYLKIDSGFTRTIDGSD 337

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +   ++R+I+ +A+ +   ++A+ I  E  +  L  +G    Q    + P+  + +  LL
Sbjct: 338 RDRIVVRAIVDLARALGLLVVAEGIENERQLARLGEIGVATWQGFLKSGPVPGDQLPGLL 397


>gi|158314509|ref|YP_001507017.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158109914|gb|ABW12111.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 706

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/455 (23%), Positives = 192/455 (42%), Gaps = 28/455 (6%)

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              NG +L  +  +            +   AF D LTG+ NR  F DRL   L   ++  
Sbjct: 262 LGENGRLLASVQTSR---------RQLHHQAFHDPLTGLANRALFDDRLRHALASCSSRP 312

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++  D+D +K++ND LG AVGD +L     R+   ++  D +ARL G+ F I+L 
Sbjct: 313 ---CALVYCDLDDFKRVNDTLGHAVGDALLRITAARLRNGVRSGDTVARLGGDEFAILLE 369

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAM 681
             +N  +       +   I  P  L  R   V ASIG     ++   T+  +L++A++AM
Sbjct: 370 DRHNGPEPEAICRRLAAMIRAPALLAGRSYPVGASIGLVVANANSAPTADALLRDADIAM 429

Query: 682 YHAKHRGGNHVESFRVS-----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           Y AK +G   +  +R       S    R  ++  L        + + Y P++ L   +  
Sbjct: 430 YAAKRQGKGGLVVYRPDLSTPESAPQTRADLEHALRGDERYGTVKIRYGPVVDLRTGDTS 489

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
            L+A   W+H   G ++      +A E  +   +  F+L  + RD+ +    +   P+F+
Sbjct: 490 ALDAEPHWNHRDLGEVAPDLLSRLANEAGLTLPLVGFVLREVCRDLAAQGPGSVTAPVFV 549

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            + ++    L       +  L++    S   I L+ +++  + +   +   L R+   G+
Sbjct: 550 SVPMSRD--LQETPVVDIVGLLADRGLSRRAIILALADAYGIPDLTDAATALRRVADGGV 607

Query: 857 SLTLDDFGTKCSL-LSYLGYIPFDTVKFNGSLMT----GSTEKRIAILRSIIPMAKNIET 911
            L LD  G   +   +    +P   ++ + SL       + ++   +  +II +A  +  
Sbjct: 608 PLALDGVG-GHASTFAAWHTLPIQIIRLDRSLTDLDTGQAHQRTRQVRDAIIGVAAQLNL 666

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHV--ASPL 944
           T++A  I   I  +EL R GC          + PL
Sbjct: 667 TVVATGINTPIQARELARAGCHLGTGPLYDPSRPL 701


>gi|313107829|ref|ZP_07794003.1| hypothetical protein PA39016_001140031 [Pseudomonas aeruginosa
           39016]
 gi|310880505|gb|EFQ39099.1| hypothetical protein PA39016_001140031 [Pseudomonas aeruginosa
           39016]
          Length = 319

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  AVE  +L L Y PI+ L  E+IVG EAL++W HP  G +   +F+ + E   ++ 
Sbjct: 2   AQLAQAVERGQLELHYQPIVDLRSEQIVGAEALLRWRHPTLGLLPPGQFLPVIESSGLMP 61

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R +  WR      P  + +N+++  +   +  + ++ +++      + +
Sbjct: 62  EIGAWVLGAACRQMRDWR-VLAWQPFRLAVNVSASQVG-PDFDKWVKGVLADAGLPAAYL 119

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S +
Sbjct: 120 EIELTESVAFGDPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFV 178

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G     +   I+R++I +A  +   ++A+ +     +  L +  CD  Q    A P+  
Sbjct: 179 AGLANDHRDQTIVRTVIQLAHGLGMEVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPA 238

Query: 947 NSILKLLKE 955
            +    + +
Sbjct: 239 AAFAVFVSQ 247


>gi|114561654|ref|YP_749167.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
 gi|114332947|gb|ABI70329.1| diguanylate cyclase [Shewanella frigidimarina NCIMB 400]
          Length = 641

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/700 (16%), Positives = 216/700 (30%), Gaps = 88/700 (12%)

Query: 12  EKAFLILVLFLLWMVSPSFAIEPINISSSDRVLD-LTSITRIYVNQGEDFQ-VFTAADID 69
            +  + L L L+     +  +  + +  +   +  +     +Y NQ  D + + T     
Sbjct: 17  FRVLIGLFLLLISQNCWASTLSGVPLRLTSDSITKIELQDWVYANQSNDIENLTTLLQRP 76

Query: 70  GISRRIEVSAS--SIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI 127
             S +   +     I  +  W  F++ N +D  L R+I + +  L     +    G    
Sbjct: 77  ENSWKKIDTNQPYKIGIKNYWVSFSIFNPNDH-LSRIIALDNPLLDSVKIYHLINGELVS 135

Query: 128 ISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDTV 185
             V         R   S+  ++ +   PG   TF ++I +       + LW  N      
Sbjct: 136 TEVMGDSLPFKQRPLESNIFLYPVNFEPGDTHTFYLKIDSKGSISLPLVLWSSNDLTRLT 195

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VN 244
            +  L+ G+ IG+   + +F     + + S            +    +   G   +    
Sbjct: 196 ETKNLFSGMQIGLLLAICLFSLFIALASASYSYSYYSGYVLGLTLLTATIHGVSFRYLWP 255

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                                ++F    L     + K+  I          L  +  +  
Sbjct: 256 QWPIIQQYIFIIIIPLTLGFSLMFTEKVLQLKYHNLKMLRICRIMAVLCFGLTIIMPFIN 315

Query: 305 MVTASIARITLAS-IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
              A      +   +      F +     G   A L     + + +  I   +     + 
Sbjct: 316 YSFALYFLAFVVLTMSTILMAFSLIQAFGGQRNAPLYAIGRMGLMVGCIITGLIYLGLIT 375

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
             I         V+I +      +  VLA  Y +    +  E Q   +  +         
Sbjct: 376 LSISPQIP----VMIGLTFEVITMAAVLALRY-NDERKAKFEIQQQTLEQA--------- 421

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEF 483
                        +  +   ++     N                L+  V  R   L+   
Sbjct: 422 -----------QRLREIREEALRNEAEN-------------SEKLEQMVQERTLELEITL 457

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R                                    E  +  + +      D+LTG+ N
Sbjct: 458 R------------------------------------ELNEVNQKLTEQNTIDSLTGVKN 481

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R +F  RL       +       ++++IDIDK+K IND  G   GD  +  +   + E +
Sbjct: 482 RSAFDRRLIAE-GRISRRQQTPMSLLMIDIDKFKNINDQYGHLSGDYTIKMIANTLCEYV 540

Query: 604 -KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFA 661
            +  D+++R  G  F IIL    +       A  +R++I+   I      I +T SIG +
Sbjct: 541 KRPTDLVSRFGGEEFAIILP-CTDIEGALLVAEQIRQAISELTIVHNGHTIPLTVSIGVS 599

Query: 662 -SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +   S      +L+ A+ A+Y AK  G N V  + + + 
Sbjct: 600 ETIIESDEHPMLLLEQADKALYKAKRSGRNKVCYYPLETD 639


>gi|310778590|ref|YP_003966923.1| diguanylate phosphodiesterase [Ilyobacter polytropus DSM 2926]
 gi|309747913|gb|ADO82575.1| diguanylate phosphodiesterase [Ilyobacter polytropus DSM 2926]
          Length = 258

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 3/240 (1%)

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             EL L + P + L   EI+G E L++W        S  EF+ +AE   +I  ++ ++L 
Sbjct: 2   KKELQLYFQPKVDLKKSEIMGSECLVRWIKDGKLYKSPGEFIPVAETSGLILDLDKYVLS 61

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R I  W          I +NI+        + +  ++++++       ++L  +E +
Sbjct: 62  EACRQIEIWESSNMNGQ-KISVNISGVHFKQKRIIDTSKSVLNRFKIPKGSVELEITEGI 120

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EK 894
            + + E +   L  L+ +G  +++DDFGT  S   YL  +P + +K + S +      E 
Sbjct: 121 FLEDIEEAADTLIELKALGFGISIDDFGTGYSSFKYLSRLPINRIKIDKSFIENIGNIEN 180

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            IAI + II M K +   +IA+ +  +  +  L   GC  +Q  +   P+      K  +
Sbjct: 181 DIAITKMIISMGKLLNLNVIAEGVETKEQLNLLIENGCTEVQGYYFGKPMPLKEYEKFYR 240


>gi|114775631|ref|ZP_01451199.1| diguanylate cyclase/phosphodiesterase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553742|gb|EAU56123.1| diguanylate cyclase/phosphodiesterase [Mariprofundus ferrooxydans
           PV-1]
          Length = 240

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           +     +G+EALI+W HP  G +S   F+ IAE+  +I ++  +++         WR+Q 
Sbjct: 1   MNTACAIGVEALIRWQHPDKGFMSPGIFIPIAEKTGLIHSLTYWVINEALNQAKLWREQG 60

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               + + IN++  +L D  L E +   +      PS + L  +ES +M NPE +R  L 
Sbjct: 61  IE--LLMSINLSVYNLQDERLVEHLGETLKTHGIPPSNLVLEITESSLMTNPELARTTLN 118

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           +L  +G+ L++DDFGT  S L+YL  +P D +K + S ++     EK+  I++S I +A 
Sbjct: 119 QLHSMGVKLSIDDFGTGHSSLAYLKDLPIDELKIDQSFISNISTDEKQALIVQSTISLAH 178

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           ++  T  A+ +  E   + L  +GC+  Q   ++ PL  + ++  L E
Sbjct: 179 SLGLTTTAEGLETEDGWRHLQNLGCNLGQGYLISKPLASDDLVHWLTE 226


>gi|292490059|ref|YP_003532953.1| protein YhjK [Erwinia amylovora CFBP1430]
 gi|292901070|ref|YP_003540439.1| signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291200918|emb|CBJ48055.1| putative signal transduction protein [Erwinia amylovora ATCC 49946]
 gi|291555500|emb|CBA24016.1| Protein yhjK [Erwinia amylovora CFBP1430]
 gi|312174251|emb|CBX82504.1| Protein yhjK [Erwinia amylovora ATCC BAA-2158]
          Length = 664

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/446 (21%), Positives = 195/446 (43%), Gaps = 12/446 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            +        + +   + +  LT +PN+  FL  L   L           TVMV+ I+  
Sbjct: 225 RNQQALCAMHDEMSRQSTRFTLTDLPNQTLFLAMLEQHLRAIGRSG--VFTVMVLRIETL 282

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            + N ++     D +L++L  +I   +    +LA+LS   F +++   NN  +    A  
Sbjct: 283 LETNGLVTDERRDALLLTLVSKIRSCIDERTVLAQLSIGDFALLIKRANNPFRALRLART 342

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +   +  P+ L   ++    SIG A    +  ++ E+L  A  AM  A+H+G N +  F 
Sbjct: 343 LMLKLNQPVLLQHMQLRPNISIGIAQ-REAGFSAPELLARAVSAMMSARHQGKNQILFFD 401

Query: 697 VSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           V   +  +  +  + D+   +   +  L   P + +   ++VG EAL++   P       
Sbjct: 402 VVLAQRAQKRLTQEHDILQGLAEEKFALWLQPQVDMRSGQLVGAEALLRMRQPDGSWSLP 461

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            + +  AEE+ +I  +  ++ E   R +  W+ +     + + +N+++  L +  +   +
Sbjct: 462 EDLIANAEEIGVIAILGRWVFEESCRILAQWQQRGCE--LTLSVNLSAIQLREAAMVTHL 519

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL- 873
           QALI +       + L  +E+  +G PE++ LLL  L+K G+++ LDDFG   + L++L 
Sbjct: 520 QALIQRYGIRAGSLVLEITETAQIGEPEQALLLLQELQKTGVAVALDDFGMGYANLNWLN 579

Query: 874 --GYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
               +P   +K + S +T        ++R I  +A+ ++  +IA+ +  +     L   G
Sbjct: 580 QFKTLPIGKLKMDRSFVTVLPYDD-TMVRIIAAIAEIVKLDVIAEGVETDEQRARLLACG 638

Query: 932 CDYIQDSHVASPLGFNSI-LKLLKER 956
             + Q    A  L       + L   
Sbjct: 639 IHFGQGYLYAGALPLAQFNQRYLASY 664


>gi|224372327|ref|YP_002606699.1| ggdef family protein [Nautilia profundicola AmH]
 gi|223589537|gb|ACM93273.1| ggdef family protein [Nautilia profundicola AmH]
          Length = 787

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 171/438 (39%), Gaps = 46/438 (10%)

Query: 522 QKKSLEGILCNAFQ---DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           QK+              D LTG+PNR+  +  +                V +++ID +K+
Sbjct: 386 QKEVDRKTNELIQHFLVDPLTGLPNREKLISDMKNY-----------KYVAILNIDYFKE 434

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND  G+ +GDDVL +++  + E+        +L  + F  +        +    AI   
Sbjct: 435 INDFYGMDIGDDVLKTVSSILSEISDT----YKLPADEFAFVENDIEMLEEKVKKAIKKI 490

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +S    I     E+ ++ S G              L  AE+A+   K      +  +  +
Sbjct: 491 ES-HKLIVDDGSEVEISISAGIGKN----------LIEAEMALKLVKSDKTIKMAVYNDN 539

Query: 699 ----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                   + +  K  L   ++   +    HPI+     EI   E L++ +H +    + 
Sbjct: 540 LPIVKEFENNIKWKNILKKVIKEKRVIPYIHPIVNSDTFEIKKYECLMRIEH-EGKIYTP 598

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ I+++      +   M+E+                    IN+++ +L + +  + +
Sbjct: 599 ENFLEISKKTGQYFDLQKIMIEKCFEKFSKL-------DYKFSINLSAFELSNEQFRKFL 651

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL- 873
              I +      ++ +   E   + N E     L  L  + +   +DDFG+  S L+YL 
Sbjct: 652 IDKIDEYNI-AEKLIIEILEDEELHN-EELMGYLIFLHNLDVQFAIDDFGSGHSNLAYLV 709

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P   +K +GSL+           +++++  MAK    +++A+ +  E   + L  +G
Sbjct: 710 TKLPVSILKIDGSLIRNIENNANNYKLVKALTNMAKIFNLSVVAEYVENEKIAEMLKELG 769

Query: 932 CDYIQDSHVASPLGFNSI 949
            +Y+Q    + P+  N +
Sbjct: 770 IEYLQGYFFSKPINLNEL 787


>gi|163731808|ref|ZP_02139255.1| diguanylate cyclase/phosphodiesterase [Roseobacter litoralis Och
           149]
 gi|161395262|gb|EDQ19584.1| diguanylate cyclase/phosphodiesterase [Roseobacter litoralis Och
           149]
          Length = 908

 Score =  293 bits (749), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 130/818 (15%), Positives = 284/818 (34%), Gaps = 101/818 (12%)

Query: 203 AIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALS 262
            I+         + +        W                 +  +G  ++       AL 
Sbjct: 119 VIYSLFL----GALVYPVVGHWVWSGAILSETQGWLQQTGFHDFAGGTVVHSVGGWAALV 174

Query: 263 SSLII--FLFMYLHWNRWHAKVGYITFSGIACIAILFCMSF-------YYPMVTASIARI 313
           +  I+   L  + H  R          +  A    +   +F       +   V   IAR 
Sbjct: 175 AICIVGPRLGRFTHVRRRFEGSSTAMKALGAVFLWIGWGAFNGGSALFFGEAVGPIIART 234

Query: 314 TLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW-------MAITKRLDNDI 366
           T+ +        +I   +  Y R  ++I   +   +               +   + + +
Sbjct: 235 TIGAAGGGVAAIVISLLIYRYPRVDIIINGILAGLVAGTAGIDVYDATDAFLVGAIGSVV 294

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF-----------SDGERQSLAVLG-S 414
           +  A        +  +   V  H+ A  + +  +            S  E+  + V G +
Sbjct: 295 MVMAFEVLEAFKIDDVVAAVPVHLAAGIWGTMAVALFGDMTVLPATSRFEQLGIQVWGIA 354

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
              +W   +    +     +  I GL   +    +R  L     ++ +    ++     +
Sbjct: 355 SVGLW---VTGTLIPVALVLKNI-GLFRAAKRDEVRG-LNLAENHEHNALSEVIQQIRSH 409

Query: 475 -RRGRLQYEFRVRAAD----------NQFHWMIIRIRPMSNSNGDILRYIGIAND-ITEQ 522
            R+G +     +  ++               +   I        +      +A +  +  
Sbjct: 410 HRKGEIGTRLMIERSNENSALAISFNGVLDKIEGEISTQLQRLNEEREMRVLAENSFSAL 469

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV-MVIDIDKYKKIND 581
           +K  E     A  D LTG+ NR    +     +  S+    +   + + ID+D++K +ND
Sbjct: 470 RKVQEESAWAARHDALTGLGNRVLLEE-----VSNSSNALQIGGILYVAIDLDRFKDVND 524

Query: 582 VLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
             G   GD VLV++  R+   L+   D   R+ G+ F  ++  + +  +   +   +  +
Sbjct: 525 SFGHEAGDRVLVTIADRLRARLRRGQDFAFRIGGDEFIALVDFDGDEGQAQHYCDDLVDA 584

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +P N    ++   ASIGFA     +       + A+LA+Y AK  G N   ++  +  
Sbjct: 585 LCVPTNFGPTQLKTGASIGFAIANRDEQGVETR-RRADLALYEAKAHGRNRAVAYASTMG 643

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                 ++   D  LA E +E+ +   P +     +++G E L +W+HPK G +S   F+
Sbjct: 644 ALQDERLEMLNDFKLAFERAEISIQLQPQVCAQSRDVLGCEVLARWEHPKRGRLSPDVFL 703

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEEL +   ++  +                  P  I IN++ + L D  L   ++  +
Sbjct: 704 PLAEELGLTARLDARIFTLAMDAWADMTAAGIDMPG-ISINVSVQRLADPALLADIKEHL 762

Query: 819 SKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
                 P  + +   E+  + +  E  +  +  L+  G+++ +DDFGT  + ++ +  + 
Sbjct: 763 P----FPGTLTIEILETAFIEDGSEDVQDRIWELKSHGVNVEVDDFGTGNASIAGVLELR 818

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   + G  + R    +++ +I MA ++ T +                   + +
Sbjct: 819 PDRLKIDRVFVPGIDQNRERGNLVKGMIDMAHSVGTEVT-----------------VEGV 861

Query: 936 -----------------QDSHVASPLGFNSILKLLKER 956
                            Q      P+     +  +++R
Sbjct: 862 ETEAEAAALVAAGADALQGYLFGRPMHLPDFITWMEKR 899


>gi|266624688|ref|ZP_06117623.1| developmental regulator MorA [Clostridium hathewayi DSM 13479]
 gi|288863442|gb|EFC95740.1| developmental regulator MorA [Clostridium hathewayi DSM 13479]
          Length = 314

 Score =  293 bits (749), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSEL 720
           W + + +    +  A LA+        N V  +          ++ I+  +  A+ N E 
Sbjct: 13  WDAHRHSPDTAINGALLALNSVNGNTSNPVAFYDEALYEKARKKIEIESQMYAALANGEF 72

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           ++   P   L D  +   EAL++W           EF+ + EE   I  ++++MLE   R
Sbjct: 73  HMYLQPKYYLKDGSMHSAEALVRWYSSDGVIHYPDEFIPVFEENGFITELDMYMLEEACR 132

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +  W+ Q       + +N +     D E  +    ++ +    PS I L  +ESV M N
Sbjct: 133 KVSQWKQQGYKVS-PVSVNQSRVFFYDEEYLDKFHEIVDQYHIDPSLIILEVTESVAMSN 191

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            E+ ++++ +L KIG S+++DDFG+  S L+ L  +    +K +   ++   ++E+   +
Sbjct: 192 LEQVKMVIRKLHKIGFSISMDDFGSGYSSLNTLKDLDIAELKLDKDFLSEQSTSERGKIV 251

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + S+I +AK +  T +A+ I  ++ +  +  + CD  Q  + A P+      +LL
Sbjct: 252 IESVIHLAKALSITTVAEGIENDVQLDFMKSICCDIGQGYYFAKPMPAEEFERLL 306


>gi|330880873|gb|EGH15022.1| sensory box protein [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 248

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 120/240 (50%), Gaps = 4/240 (1%)

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + +   I   D+ I G EAL++W+HP++G +S  +F+ I EE  MI  +   +L+   + 
Sbjct: 1   MHFQAQIDCRDQYITGAEALLRWEHPEYGLLSPDQFVQILEESGMILEVGSHILDEACKT 60

Query: 782 IISWRDQAN--MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
                 Q         + +NI+ +    N+  E +Q  + +     S +KL  +E +V+ 
Sbjct: 61  GGLLLKQGLISKNKFLMGVNISPRQFRQNDFIERVQHSLKQHQLPASMLKLEITEGIVIQ 120

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIA 897
           N + + L +  L+++G+S  +DDFGT  S L+YL  +P DT+K + S +    S      
Sbjct: 121 NLDDTILKMLSLKELGVSFAMDDFGTGYSSLTYLKRLPVDTLKIDQSFVQDATSDPNDAE 180

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           I+R+I+ MA+++   +IA+ +     +  L R+GC   Q    + PL       LL +R 
Sbjct: 181 IIRAIVAMAQSLNLNVIAEGVETPEQLAFLERVGCYNYQGYLFSEPLPGPQFENLLLKRQ 240


>gi|123441459|ref|YP_001005445.1| putative sensor protein [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122088420|emb|CAL11212.1| putative inner membrane protein [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1134

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/581 (18%), Positives = 231/581 (39%), Gaps = 13/581 (2%)

Query: 380  ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
            IL        +      ++ +  + ER  + +   G+ V   D         P    + G
Sbjct: 551  ILRLIGTTLDMTEIRNLTEALHEEKERLHITLDSIGEAVVCTDQEMKITFMNPVAEKMTG 610

Query: 440  LASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMII 497
             A+    G   ++ +   +  D       ++  + +R    L     +   D Q++ +  
Sbjct: 611  WANTIALGQPIQHIIKLTNGVDGPEIDNPIEHCLTHRPYSSLNESIVLHHRDGQYYDIQE 670

Query: 498  RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + P+    G ++  + +  D+ E +  +  +  +A  DNLTG+PNR +F ++L   +  
Sbjct: 671  SVAPLKTLEGTVVGAVLVFQDVGESRAMMRKLSHSASHDNLTGLPNRANFENKLKAAIQK 730

Query: 558  SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
            S  D + +  +  +D+D +K +ND  G   GD +L  L++ + + L+  D +ARL G+ F
Sbjct: 731  S-IDFDQQHALAFLDLDYFKAVNDTAGHPAGDALLKELSQLMRQHLRNSDCVARLGGDEF 789

Query: 618  GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            G+++++       A     +           ++   + AS G    +SS    SE++  A
Sbjct: 790  GLLMLNCTLPHAKAITQSLVSMINGYHFYWEDKLYRIGASAGVTQISSSNSQRSEIMAQA 849

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPIIRLMDE 733
            ++A Y AKH G   V  ++    +      +    E++   +  ++L L   P       
Sbjct: 850  DIACYTAKHSGRGQVYLYQPRQKQLLARQHELLSREEVESILSENQLLLQVTPTAPPKTP 909

Query: 734  -EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
              +   +  ++ D P+   +S S F   A    ++  ++ ++ E+    ++      +  
Sbjct: 910  LSVCFYQVSLEIDRPQSPLVSQSAFEEAATLYNLLPKVDSWICEQ---LLVDHAQAIHQK 966

Query: 793  PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
             + + I ++   LL  +  + +  L+ +TL  P  +     ES ++  P      L +L+
Sbjct: 967  GLALAIPLSEAALLKEDFRQSLLTLVQQTLLPPQSLYWMIDESTLLQYPFAIGNFLAKLQ 1026

Query: 853  KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            + G  L + +FG   +    L     D +KFN  L+           ++  I   A+   
Sbjct: 1027 QPGCKLIVKEFGHNLNDFELLAEHHIDYLKFNSELIAHIHINQMDEVLISIINGTAQRAN 1086

Query: 911  TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               +A  +     + +L  +G D    + +      + +L 
Sbjct: 1087 IATLAGPVELPPTLSKLIDIGVDLADGTMIGRTEPLSEVLN 1127



 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/383 (11%), Positives = 103/383 (26%), Gaps = 36/383 (9%)

Query: 172 QIYLWEPNFYKD--TVNSFTLYRGIIIGVASLLAIFLT----IFYMVNRSSM-------- 217
            +  W         ++ +       I G    L +           + R  +        
Sbjct: 79  PMRYWSWQLLAAGISIIAANFILYGISGFPLPLTLINLTEAAAGAWLLRKFLQPKDPLNN 138

Query: 218 LIPTFAMAWVVLGYISIDFGFLSKLV--NLPSGELLIWRA------CSEIALSSSLIIFL 269
           L      +   +  + +  G  +             +            +AL    +++ 
Sbjct: 139 LFSWLKFSVCTVILVPLLSGLAAAWYLAPQNGSFTQVLTVWFMSEAIGMLALGPVGLLYR 198

Query: 270 FMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYH 329
             Y +       +  + +  I  ++  +    Y P     I               +I+ 
Sbjct: 199 RGYFNITNKTKALFDMIWMMIVSLSACYIGLMYLPFPFTFIIM------------ALIWT 246

Query: 330 GMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH 389
            ++        I     + I  +  +   T ++D  +   A     +L+V++    +   
Sbjct: 247 SIRLPRFETFTICFLATLLIAMMINFNLFTLQVDTKLSVQAFSFIPLLMVLIPPHAMAMV 306

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           + A     + I     R   A+  S   +         +     +  +LG    ++    
Sbjct: 307 MHAFRMEKEHIVESENRFRNAMEYSAIGMALVSPEGKWMQVNQALCKLLGYRQETLLT-- 364

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +    H  D      +LD            E R   +D +  W ++ +  + +     
Sbjct: 365 LTFQQITHPEDLSADLKLLDDLYHGHIPSYSMEKRYIRSDGEVVWALLVVSVVRDHAQQP 424

Query: 510 LRYIGIANDITEQKKSLEGILCN 532
           L YI    DI + KKS       
Sbjct: 425 LYYISQVEDINDLKKSEIVNRRL 447



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+ DI +  ++    +  +  +   +       W  YIH  D + 
Sbjct: 448 MERITLANEAGGIGIWELDIRKQLISWDKRMYELYHIPFNTPVDET-VWQQYIHPEDINR 506

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
            +    + +  R+   + +FR+   +     +  +   + + NG+ILR IG   D+TE +
Sbjct: 507 VKREYSAALTQRQ-PYRLDFRLLLPNGDIVHLRNQANMICDKNGNILRLIGTTLDMTEIR 565

Query: 524 KSLE 527
              E
Sbjct: 566 NLTE 569


>gi|309777070|ref|ZP_07672036.1| putative pas:ggdef [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915140|gb|EFP60914.1| putative pas:ggdef [Erysipelotrichaceae bacterium 3_1_53]
          Length = 438

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 164/429 (38%), Gaps = 13/429 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           ++D++TG  N       L  + D      +     + ++I +++ +N+  G A  D  L 
Sbjct: 11  YRDSITGGGN----EAWLKEMYDTQQKQLSSSYVFIDMNIKRFQYMNNKYGRAHADRALK 66

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF-AIAMRKSIAMPINLLEREI 652
            L     + L   + +AR+  + + ++L  +        F    +      P  L    I
Sbjct: 67  HLYDITSQFLSEQEYIARICADDYNLLLHYDTMEAMFEKFLIPFVDAVFDDPDPLFFHNI 126

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG----NHVESFRVSSFRSDRVMIK 708
            +  S GF           E    A++A               +    +           
Sbjct: 127 YL--SFGFYFLEQQPCDFYEAQNRAQIARKECPQLKRRTFSYDIYHADMFHEYIRVRETA 184

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E +  A    E      P IRL DE IVG E L++W   +   I  S F+ +      I 
Sbjct: 185 EQVTRARFAHEFIPYVQPKIRLCDEAIVGGEVLLRWQDHEGNLIPLSSFLPVLNANGDIY 244

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++L + + +   + +       P + +  NI +  L D +       +  K   +   I
Sbjct: 245 MVDLNLFDTVCAYLHTALAD-GEPVVPMSFNITNTSLFDEDFLHDYLDIFHKYNINEQLI 303

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +  F E++     ++ + ++   ++ G + +LDDFG+  S  + L     D +K +    
Sbjct: 304 EFEFMENIRFDYYDQVKDMIDAFKQYGFTCSLDDFGSGYSSFNILLENLVDILKIDKMFF 363

Query: 889 -TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                +K  +I++ I+ +A  +   ++A+ I  +  +  L  +GCD +Q  +   P+  +
Sbjct: 364 EKPLDDKNKSIIQHIVEIAHTLNMQVLAEGIETKECLDFLKEIGCDMVQGYYYYKPMPLH 423

Query: 948 SILKLLKER 956
              KL+K R
Sbjct: 424 DFHKLIKSR 432


>gi|223984788|ref|ZP_03634900.1| hypothetical protein HOLDEFILI_02197 [Holdemania filiformis DSM
           12042]
 gi|223963274|gb|EEF67674.1| hypothetical protein HOLDEFILI_02197 [Holdemania filiformis DSM
           12042]
          Length = 1006

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/588 (18%), Positives = 222/588 (37%), Gaps = 50/588 (8%)

Query: 388 QHVLATGYFSQGIFSDGERQSLA--VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           Q   A    S+ +  +  R S    +L      ++ +  ++ V  T     +L      +
Sbjct: 435 QLSQAIEELSKSVAENSSRLSQIIGMLSIQIGAFEVEADKNSVFCTSGFFDVL----DPL 490

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                  L     ++      +LD  +       +   ++        WM ++       
Sbjct: 491 TAHEDRMLTL---DEFAGQLRLLDLDLKDLGRLREKTIKLEQEGGGSRWMRLKTAA---- 543

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                  +G+  D+T +      I      D LT + NR++F        +         
Sbjct: 544 --RAQTILGVVQDVTAEMVERHRIEYERDYDVLTNLLNRRAFQRFAQERFEHPEQLKIT- 600

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
              M++D+D  K IND  G   GD  + S    +       +I AR+SG+ F ++     
Sbjct: 601 -AFMMMDLDNLKYINDTYGHDCGDGYIRSAADVLRNNAGPHEIAARMSGDEFYVLFYGYE 659

Query: 626 NSLKIADFAIAMRKSIAM-PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              +I      +RK++A   + L   + I + AS G + +        E++K A+ AMY 
Sbjct: 660 TDFQIRQKIEQIRKAMAAYEMELPDGKSIRIRASFGVSWYPRDSRNLDELIKYADFAMYE 719

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            K+     ++ F + S+R D  M+    DL   +EN  +  V+ PII +  + + G E L
Sbjct: 720 IKNSVKGGIKDFEIESYRKDSFMLHSSEDLNRLIENELIDFVFQPIIDVESQTVYGYEML 779

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI----L 797
           ++         + SE + IA     +  I      +    +  +  +     +FI     
Sbjct: 780 MRPKMENLK--TPSEVLRIARAQSRLYQIERLTWFKAMEAVDRYHQRLQGKKLFINSISS 837

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS---RLLLGRLRKI 854
           + ++ +DL      E +  L  +     S++ +  +ES  MG        +  + + ++ 
Sbjct: 838 LRLSPEDL------EELDRLYGRYN---SQVVIELTESEKMGEMATIHKRQRCIDQHQE- 887

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
              + LDD+GT  +  + L  +  + VK + S++ G      R      ++   ++ +  
Sbjct: 888 ---IALDDYGTGYNGEATLLDLMPNYVKVDMSIIRGLDRDVNRREFYEGLVVYFRSRKIK 944

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVAS-----PLGFNSILKLLKE 955
           I+A+ +    +++ L   G DY+Q  +        P      ++ L++
Sbjct: 945 ILAEGVETREEMEALIECGTDYMQGFYFRKGELVPPEPCPEAMEALRK 992


>gi|325970871|ref|YP_004247062.1| diguanylate phosphodiesterase [Spirochaeta sp. Buddy]
 gi|324026109|gb|ADY12868.1| diguanylate phosphodiesterase [Spirochaeta sp. Buddy]
          Length = 886

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/613 (15%), Positives = 221/613 (36%), Gaps = 56/613 (9%)

Query: 356 MAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG 415
           +     L +D ++ A+   + ++  L+      + +  G   Q   S      L    + 
Sbjct: 312 LTHEFLLSHDSVKYAITALVFILGSLLVVF---YQIRVGDKQQMRISS-----LVADYAT 363

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           + +   D   +          + G     + G                 R  L      R
Sbjct: 364 NGIVVCDAKGNITFCNEAFEELSGYQQNELIGKSSF-----------KLRQDLQVVAHTR 412

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN-------DITEQKKSLEG 528
           +   ++   V           + I  +          + + +       DI +       
Sbjct: 413 QQMEEHPAWVFHRSGNKFLTSLSITHLYTRQNKREHTVEVYSPSRWTPSDINQL------ 466

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
               A  D               +TI  L    +    + + I +   K+I   L  +  
Sbjct: 467 -CELANHDP----------SQCFSTIFSLV--SEGKSVSCLCIKVQNSKEIGMQLNQSER 513

Query: 589 DDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
               ++    +  LL     +   S + + + L     +  ++     +  +   P N L
Sbjct: 514 VKFSLNFASTLSNLLGSTLAVHAFSFDSYFVFLKDCELNESLSKKMQLLINAFQEPFNTL 573

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELA--MYHAKHRGGNHVESFRVSSFRSDRVM 706
           +  +   AS    ++ S+     ++L +A LA  M            +  V      +  
Sbjct: 574 DIRLDCGAS----NYPSTSSNVFDLLVDAYLASQMGEKLKSARPVFYTSEVRKQFQRQTA 629

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+E L       ++ L Y   + +    I+G EALI+W+ P  G I   EF+ I +E   
Sbjct: 630 IREALVGVFNTDQIKLFYQAQLSVQTGLIIGAEALIRWESPTLGTIRPDEFLPILQEQQQ 689

Query: 767 IKAINLFMLERIARDIISWRD--QANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
           +  +  F++ +  + +    +  Q N P   + IN++ ++  +  + + + + + +    
Sbjct: 690 LDQLGRFVITQSIQFMSQNLEYLQTNCPNFSLSINLSPEEFSNPVIIDLLGSQLREYHIP 749

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + + +  +E   + N   +  +L ++   GI++ +DDFGT  S LSYL  +  D +K +
Sbjct: 750 DNFLTVELTEHTAIENLTSANFILEKMHAQGIAIAIDDFGTGFSSLSYLMELSIDMIKID 809

Query: 885 GSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S ++       +I   ++++ +AK +  T++A+ +  + ++  L  +GCD  Q    + 
Sbjct: 810 RSFISRY-PDSQSITIYKTVLLLAKVVGATVLAEGVERKDELAFLKEIGCDQYQGYLFSK 868

Query: 943 PLGFNSILKLLKE 955
            +   + LK +++
Sbjct: 869 AVDGATFLKQIEQ 881


>gi|326385594|ref|ZP_08207228.1| putative signal transduction protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209928|gb|EGD60711.1| putative signal transduction protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 607

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/467 (23%), Positives = 198/467 (42%), Gaps = 12/467 (2%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            ++   R  P  N  G I     +      + + ++     A  D LTG+PNR +     
Sbjct: 136 LYYQEARA-PGPNEQGIIEACTELCGIALARHRRVQERERQALVDALTGLPNRAA----F 190

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L         R  ++V+D+D  K  ND  G  +GD +L ++  R+   +   D + R
Sbjct: 191 GAALAGLDCSVAGRWALLVLDLDNLKVTNDSFGHPIGDQLLQTVATRVAASIAP-DRVFR 249

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
             G+ F I++ +      +  FA  +   ++  +      I    +IG A    +  T  
Sbjct: 250 TGGDEFTILVEAAAALSDLDGFAEDVLTRLSTVMVCEGHTIIPRGTIGGALVAITDRTPE 309

Query: 672 EMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +L+NA++A+YHAK   RGG       + +    R+    DL  A+    +   Y PI+R
Sbjct: 310 TVLQNADIALYHAKEVRRGGFVRYWPGIDTRIMHRIAAVRDLSAALAEGRIEAHYQPIVR 369

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L   EI+GLEAL +    K   +S++ F    ++  +   +   MLE +ARD+  W    
Sbjct: 370 LDTYEIIGLEALCRLRMAKGDVLSAASFQDATDDPKVAAELTARMLELVARDMRDW-AAL 428

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV-VMGNPERSRLLL 848
            +    I IN++  D L   L + +   I     +P+++ +   E V            +
Sbjct: 429 GLHGGPIGINVSKADFLGGRLEKLVANAIEHHGLNPAQLVIEIPEKVCAATRDAGFMQTV 488

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMA 906
             L   GI + LDDFG    ++  L  +P   +K +  L  G  +  ++ AI+  ++  A
Sbjct: 489 TGLHARGIRIVLDDFGLDGGMVEPLLTLPLYAMKIDSRLSNGVLTDARQAAIVGGLLHAA 548

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + ++  ++A+ +       +L  +GC   Q    A PL   ++  +L
Sbjct: 549 RRMDILVVAEGVESASQAMQLRNLGCTLGQGYLFARPLDRAAMASML 595


>gi|261855859|ref|YP_003263142.1| diguanylate cyclase/phosphodiesterase [Halothiobacillus
           neapolitanus c2]
 gi|261836328|gb|ACX96095.1| diguanylate cyclase/phosphodiesterase [Halothiobacillus
           neapolitanus c2]
          Length = 737

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/800 (15%), Positives = 262/800 (32%), Gaps = 129/800 (16%)

Query: 193 GIIIGVASLLAIFLTIFYMVN-RSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELL 251
           G +  V  ++A    + +             A A+ +   +   +G L  L    +   L
Sbjct: 23  GFVSAVWLMVAALTVLLFPSLDADGFYAIWPANAFALGFVLMWGYGLLVPLALTVAVWNL 82

Query: 252 IWRACSEI----------ALSSSLIIFLFMYLHW------NRWH--AKVGYITFSGIACI 293
            +   + +             + L++F    L         R         +  S I  +
Sbjct: 83  FFIGLTLVQSLFGAIALVLSLALLLMFRRYMLATISSPYGRRLLGIPTASLVMASLITAL 142

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA----------VLLIPA 343
            I    ++     T  +   + +   L  T  ++    +G  +A           + I  
Sbjct: 143 GIWQNSAWVDDYQTIGLFWFSQSIAFLALTPLVMSCLHEGCGQAFNELKACFSRRVFIGV 202

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W+ + +  + +  A+    +                +      +  ++     +  +   
Sbjct: 203 WLSVAVSTLVIMAALRHWGN----------------LEFNAGSLLGLVVLALAAHTMPIR 246

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             R S+A      +VW W            I  + G  +  + G              D 
Sbjct: 247 IARFSIAFY---ILVWTW--------FNAHINLLHGYNASMLLG--------------DQ 281

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               + + +      +   +R+                                      
Sbjct: 282 ALIFIAALLAVISTEMVQAYRLSEKS---------------------------------- 307

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +      D LTG+ N      RL        T       V+ + I + ++I+ ++
Sbjct: 308 -----LARQLLIDPLTGLQNDMGLSQRL-QAWPKDRTGAMQPMIVIGVHIPELEQIDALM 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    + V + L++ + +     D  +R+    F + L S    ++ AD A  ++  I  
Sbjct: 362 GHEESNQVELRLSQILRKEKL-SDYASRVRPGVFILCLTSAVMGMRGADVAQKLKDRIEF 420

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----- 698
               +          GF  +  ++     +L +A LA         N +     +     
Sbjct: 421 EWKKMGAGARY-LQAGFTVFNLAQTRDLGLLTSAVLAGCQLSLADRNQLVHVEDNLDSLL 479

Query: 699 ----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  +    ++  L    +  +  L    I      ++   E L++W       +  
Sbjct: 480 SHRVQELTWVQRMRAALVGDTQAGQFILFAQTIRDTRHPDVKAFEVLLRWQDADENVLPP 539

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIIS--WRDQANMPPIFILINIASKDLLDNELCE 812
           SEF+ IAE   ++ AI+L+++      +    WR + +     + IN++   L D  L  
Sbjct: 540 SEFLPIAERYGLMTAIDLWVMRSALEQLAQSPWRAEIS----KVSINLSGASLADPNLIH 595

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  +        +I    +E++V+ + + +R  +  ++++G  ++LDDFGT  S  SY
Sbjct: 596 EIEQQLKSCGCRAEQICFEITETMVIADTKLARQAVLGIKELGCKISLDDFGTGLSTFSY 655

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L   PFD +K +G  +   TE     AI+ SI  +A  + T  +A+ +     ++ L ++
Sbjct: 656 LKRFPFDYLKIDGEFVRHITESRIDRAIVESIQAIAFEMNTITVAEFVENIDQMETLRQI 715

Query: 931 GCDYIQDSHVASPLGFNSIL 950
           G  Y Q   VA P+     L
Sbjct: 716 GVYYHQGYGVAKPVPIAHFL 735


>gi|330504296|ref|YP_004381165.1| diguanylate phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328918582|gb|AEB59413.1| diguanylate phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 453

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 114/254 (44%), Gaps = 3/254 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  DL  AV   +  L Y P +      + G E LI+W HP+ G ++  EF+  AE   
Sbjct: 200 ELDRDLRAAVREQQFVLYYQPQLD-DSGRVTGAELLIRWQHPQRGLLAPGEFIDHAENTG 258

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I  ++LE+ A  +  W+D      + + +NI+ K          +  LI +     
Sbjct: 259 LIIPIGQWVLEQTAARLRQWQDDPLYRDLSLAVNISQKQFGQASFVAEILGLIERHGIDA 318

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +E++++ + E     +  L + G+  +LDDFGT  S LS+L  +P   +K + 
Sbjct: 319 QRLELELTETLIVRDMEDLTRKMTALVERGVRFSLDDFGTGFSSLSHLKRLPLSKLKIDR 378

Query: 886 SLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +    +      I+R++I + +++  T+IA+ +  E     L   GC   Q      P
Sbjct: 379 SFICDVLTDANSETIVRTVIALGQSMGMTVIAEGVETEAQRGFLADNGCLRYQGYLFGRP 438

Query: 944 LGFNSILKLLKERF 957
           +        ++   
Sbjct: 439 MPLADFCAFVQRHN 452


>gi|296272678|ref|YP_003655309.1| diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096852|gb|ADG92802.1| diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
          Length = 664

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 168/433 (38%), Gaps = 32/433 (7%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E++   E  L   + D LT +PNR      L                +M+++I+++  IN
Sbjct: 252 EKRTKKEYELQIIYIDRLTELPNRLKLSKDLEK---------QSAVKLMILNINRFTDIN 302

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILI--SENNSLKIADFAIA 636
           +     V D +L  +   +  L        + +L+ + F I+    + ++   +      
Sbjct: 303 NFYSYKVADKLLKEIANFLKNLFINNSDIRVYKLAVDEFAILSTSKNLSSLEFVDICKTT 362

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV---E 693
           + K    P  + E EI V+ + G +   +          NA+ A+  AK R  ++    E
Sbjct: 363 INKIEFNPFTIGEDEIIVSITGGISLHQNHS------FINADTALKIAKERNKDYFIYNE 416

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           +  +     + + + + L  A+  + + L    II   + EI   E L++        IS
Sbjct: 417 NENIDINFKNNIKMTKILKDAINENRVVLFKQAIISNENNEINKYECLVRIKQKDGSIIS 476

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ +++++ +   +   +++                     IN++  D+LD      
Sbjct: 477 PYLFLDVSKKIKLYPKLTRAVIQNAFIHFK-------NKKCDFSINLSLDDILDEATVAF 529

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++  ++ +      +     E+  + N E   L +  ++  G  + +DDFGT  S   Y+
Sbjct: 530 IKLKLASSKI-AHHVIFEIVETEGIDNFEEVSLFIKEMKNCGCRIAIDDFGTGYSNFDYM 588

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +G+ +           +   II  AK      IA+ ++ +   +++  + 
Sbjct: 589 MKLNVDFIKIDGAFIKNIDTDEQSQILTELIISFAKKQNIKTIAEYVHSKTVYEKVKSLN 648

Query: 932 CDYIQDSHVASPL 944
            DY Q  ++  P+
Sbjct: 649 IDYSQGYYLGEPI 661


>gi|78777555|ref|YP_393870.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498095|gb|ABB44635.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 723

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 182/431 (42%), Gaps = 33/431 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K L+      ++D+LT + NR +  D L                +++ +I ++  +N++ 
Sbjct: 309 KILKHFSKQVYKDHLTNLKNRYALDDAL---------TSQKSKVLILSNIKEFSLLNELY 359

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISEN-NSLKIADFAIAMRKSI 641
           G+ VG++ L+ +     E  +     + R+S + + ++   EN +    +     +   I
Sbjct: 360 GVHVGNETLIQVAHAFKEFAQEHSFEVYRISSDEYVLLKNDENFDEDSYSKLTEELHCKI 419

Query: 642 AM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--- 697
               I +   +  ++  I          +  +    A++A+  AK    +++   +    
Sbjct: 420 NSLNIVIHGVDEIISIEIYSGIAHDHAHSLED----AQMALKKAKKNSLSYMIYSKNVDT 475

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG---NISS 754
                  + IK+ +  A+E+  +   + PI    +  IV  EAL++      G    +S 
Sbjct: 476 KESSQTILNIKKTIKHALEHKNVVPFFQPITD-KNGTIVKYEALVRIVEFDNGKKNILSP 534

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           +EF+ I+ +      I   MLE+      S  +        I +N    D L+  + E +
Sbjct: 535 AEFLDISMKSGSYIKIAKEMLEQSFSIFASRSE-------KISVNFLPNDFLNPSIMEAL 587

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              I K   SP+R+ +  +E   + N ER   ++ +LR IGI + +DDFG+  +  +++ 
Sbjct: 588 IIGIEKFE-SPNRVVVEITEQEGVENFERLLHVVKKLRDIGILIAIDDFGSGYANYAHIL 646

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            I  D +K +GSL+       +   +++SI+  AK +  T +A+ +  +   + L   G 
Sbjct: 647 QIKPDYLKIDGSLIKDILEDNESRILVQSIVRFAKELGITTVAEYVETKEIFELLKSYGV 706

Query: 933 DYIQDSHVASP 943
           D  Q  +   P
Sbjct: 707 DEFQGYYFGRP 717


>gi|42527578|ref|NP_972676.1| GGDEF domain/EAL domain-containing protein [Treponema denticola
           ATCC 35405]
 gi|41818163|gb|AAS12587.1| GGDEF domain/EAL domain protein [Treponema denticola ATCC 35405]
          Length = 1004

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/659 (18%), Positives = 239/659 (36%), Gaps = 56/659 (8%)

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
           AS++ +                 L +    L       ++  +  +L N   +  L    
Sbjct: 373 ASVLSFSVTLKKIFWQSVLVSGFLFLAGSYLSSQHISSMFTKVVLKLQNSDPKKMLSIEK 432

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSD--GERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           + I  +    V    L+   F+         E+  +        V++ +I+   V     
Sbjct: 433 MNIAEIDTLIVAIEKLSASVFNAASRVSTIIEKLQV-----PIGVFEHNILMGTVFCNSI 487

Query: 434 IATILG---LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
              +      +  S+      +    H     N +    +      G             
Sbjct: 488 WFKLFNIQKYSGDSVLNTDEFYKLLDHYEYYINSKDDTKTIYAIPTGEH----------G 537

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +  W+       ++        +GIA DIT++ +  + +      D LTG+ NR +F  +
Sbjct: 538 KVRWIRFMQTKENDK------ILGIALDITKEVEDRKKLELQMNYDELTGLYNRAAFDRK 591

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +T +             +++ D+D  K +ND  G A GD  L++  +++  L +   ++ 
Sbjct: 592 ITEVF---KQKHLGICALVMWDLDNLKYLNDSFGHAYGDTHLMAFGKKLAMLQQERCLVC 648

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREIT-VTASIGFASWTSSKI 668
           R SG+ F     + +   +I     A  K I   PI L   E + +  S G A +     
Sbjct: 649 RRSGDEFYSFFYTFSTPDEIKLILTAFWKDIQETPITLPNGETSKLRVSAGLAWYPYDAD 708

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHP 726
             +++++ A+ AMY  KH     +  F +  ++ + +MI   E L   ++ + +     P
Sbjct: 709 NQADLVRYADFAMYDVKHSFKGSLHEFNLDVYKKNYIMIHGTEALNQMLDRNLIEYALQP 768

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI-ISW 785
           I+     +I G E L++   P+    S  + + +A+    +  +                
Sbjct: 769 IVTSGTGDIYGYEMLMRSSAPE--FKSPEDILRLAKAQSKLHKLEELTFFGAMDTFVKKI 826

Query: 786 RDQANMPPIFILIN-IASKDLLDNELCEGMQALISKTLYSP--SRIKLSFSESVVMG-NP 841
                     I +N I+S+ L D +  E  +         P  S I L  +ES  +  N 
Sbjct: 827 ERGEISKDTKIFLNTISSQVLSDAKFFEFEEKF------KPYLSNIVLEITESEPLNTNF 880

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAIL 899
              +    R+R     + +DDFG+  S  S L ++  + VK + S++    +   +  +L
Sbjct: 881 YDLKN--ERIRNWNAMVAIDDFGSGYSNESSLLFLSPNLVKIDMSIVRDVHKSLDKQNVL 938

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS------PLGFNSILKL 952
            +++  AK  +  I+A+ +    +I  L R G D  Q    A       P+    I +L
Sbjct: 939 ENLVSYAKKRDIIILAEGVETIDEIDVLLRFGVDLFQGYFFAKPSFDITPIPEERIQEL 997


>gi|126728218|ref|ZP_01744034.1| diguanylate cyclase, putative [Sagittula stellata E-37]
 gi|126711183|gb|EBA10233.1| diguanylate cyclase, putative [Sagittula stellata E-37]
          Length = 514

 Score =  292 bits (747), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 182/422 (43%), Gaps = 15/422 (3%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R      L   +       NL    +++++   ++ +   G    D +      R+   L
Sbjct: 84  RALAQQALDRAVAA-----NLATACIIVELAGLEEASLPPGDTTADTLRDLSLSRLRNAL 138

Query: 604 KFPDILARLSGNRFGIILIS--ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           +  D   R+  NRF I+L      +   +   A  ++ ++  P  +      ++AS+GF 
Sbjct: 139 RRDDTAVRMGDNRFLILLGPSLRLDLEALLQLATRIQNALEEPAAIENSMRYLSASVGFC 198

Query: 662 SWTSSKITSS--EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVEN 717
                   +   ++L+ A++A+  A   G + + ++      +      +K ++  A+  
Sbjct: 199 GSPRLPSDAKGAQLLEAAQIALAEAIANGPSAIRAWSEHMRLAHTEQKTLKSEVDRALAA 258

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            ++   + P +     +I G+EAL +W HP  G +  ++F+ + E+   +  ++  +L+ 
Sbjct: 259 GQIQPWFQPQLCTSTGQISGVEALARWLHPTRGIVPPAQFLRVLEDAGRMDRLSEVILQH 318

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               + SW       P  + +N + ++L D  L E +Q  + +   +P R+ +   E+V+
Sbjct: 319 SLTALRSWDSAGLEIP-RVSVNFSDQELRDPRLVERIQWELDRFGLTPERLGIEVLETVI 377

Query: 838 MGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EK 894
             +PE      +  L K+G  + LDDFGT  + ++ L       +K + S +T     E 
Sbjct: 378 ASSPEGIVARNIVELGKLGCQIDLDDFGTGHASITSLRRFKVHRLKIDRSFVTRIDRDED 437

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +  +L +I+ MA  +    +A+ +    +   + ++GCD++Q   +A P+  + I     
Sbjct: 438 QHRMLAAILGMADRLGLETLAEGVESVGEHALIAQLGCDHVQGFGIARPMPADQIADWAH 497

Query: 955 ER 956
           + 
Sbjct: 498 QH 499


>gi|332297748|ref|YP_004439670.1| diguanylate phosphodiesterase [Treponema brennaborense DSM 12168]
 gi|332180851|gb|AEE16539.1| diguanylate phosphodiesterase [Treponema brennaborense DSM 12168]
          Length = 688

 Score =  292 bits (747), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 168/435 (38%), Gaps = 21/435 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D+LTG+ N  +F   +                V+   ++    +N+  GI   D++L 
Sbjct: 222 FIDSLTGLFNTTAFASLIDEKFVR-----KDPFYVIGFVLEDLNFLNNTFGIRSIDELLK 276

Query: 594 SLT-------RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            +         R  +       +  ++ + F  I++   +   +      +R+      +
Sbjct: 277 IIAVFFTETAERFKKTACSD--VYTIATDEF-CIVVKTQDMTVVQSMVDCIREKFESVWD 333

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDR 704
                +T+ + I      S   +++++L     A+        G         ++     
Sbjct: 334 FQNTTVTLFSRICVIRCPSDAESAADILDLL-TAVGEQQYYRAGRVLFADSLDTTRNRLS 392

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +   +  +++N  + + Y PI  +    ++G EALI+        IS  +F+ IAE+ 
Sbjct: 393 RQLDRTIKTSIQNDLISVWYQPIYSISKRRVIGAEALIRMKDENGNFISPEDFIPIAEKN 452

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  I  F+LER+   +             I IN++    +   L E + ++       
Sbjct: 453 GTILRIGEFVLERVCSMLSDLN-LGWYGIEKIDINLSMIQCMQKTLAEQIISITDIYRVP 511

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              +    +E+     P+  +  + RL   G   +LDD+G+  S ++YL  +PF+ +K +
Sbjct: 512 RRILDFEITETAAAYLPKMLQENMERLNSAGAECSLDDYGSGYSNMNYLIELPFNMIKID 571

Query: 885 GSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             ++  + +  +    L   I M K++   ++A+ +  +  ++ L  + CDY+Q  + + 
Sbjct: 572 KGIVWSADKKLRSRTALAHTITMIKSLGMQVLAEGVETKEQMQWLASLDCDYLQGYYFSK 631

Query: 943 PLGFNSILKLLKERF 957
            L     L  L    
Sbjct: 632 SLPQKDFLAFLAREM 646


>gi|289673895|ref|ZP_06494785.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 259

 Score =  292 bits (747), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 117/241 (48%), Gaps = 3/241 (1%)

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           ++ +  + Y P    +    VG EAL++W+HP+ G +    F+ +AE+  +I  I  ++L
Sbjct: 2   KHRQFCIYYQPKFDAVTGLPVGAEALLRWNHPEQGVLGPDLFISMAEKTGLIIQIGEWVL 61

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   R +  W  Q       I +N+++     + L   +   +++     + + L  +E+
Sbjct: 62  DEACRQMREWYTQ-GYSHWRIAVNLSALQFCHSGLVTAVADTLARHQLPANCLTLEITET 120

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
             M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + +K +   +       
Sbjct: 121 TAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEIKIDRGFVRDLEHDT 180

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q   +  PL     L+ +
Sbjct: 181 DDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGFLLGYPLPAQQFLEEI 240

Query: 954 K 954
           +
Sbjct: 241 R 241


>gi|296273795|ref|YP_003656426.1| diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
 gi|296097969|gb|ADG93919.1| diguanylate cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
          Length = 641

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 184/420 (43%), Gaps = 20/420 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT + NR    +     ++L+         +  +DID +K++ND  G  VGD +L 
Sbjct: 229 YIDKLTNVFNRNYLQES-EDFINLND------YILATLDIDFFKRVNDTYGHDVGDKILK 281

Query: 594 SLTRR-IGELLKFPDILARLSGNRFGIIL-ISENNSLKIADFAIAMRKSI--AMPINLLE 649
            + R  +       DI+ R  G  F I+   + N+     +    + K+I         E
Sbjct: 282 DVARIILKSTRNKDDIVIRYGGEEFVILTKTARNDHSSALNIIERIYKNIKNNKFYINNE 341

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
             I +T SIG         T SE  K A++A+Y+AK++G N +E +  +  +    +   
Sbjct: 342 NYINITVSIGVNLVPFKSKTFSEAFKLADIALYNAKNKGRNTIEIYDENEEQITNCLSIS 401

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A++ + +   Y  I+    ++I   EAL++        I+  + +       +++ 
Sbjct: 402 EINEAMDENRVICFYQGIVDTNTKKISHYEALLRIVDKDGTIITPDKILPAIRGTFILRN 461

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L+ I      ++       I I +N+  +D++++ +   +         S SR+ 
Sbjct: 462 ITKYVLD-IC-----YKRLLEDENIKINVNLNPQDIINDSILSILTTYAEDRSIS-SRLG 514

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L   E+  +     ++  L  L+ +G  + +DDFG+  S   YL  I  D +K +G+++ 
Sbjct: 515 LELVENEDIMTCLDAKENLSMLKDLGYKIFIDDFGSGYSNFIYLTEIKTDYIKIDGNIIK 574

Query: 890 GSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              E  ++   ++SI+  AK     +I + +  +    ++  +G +Y Q  + + P  F 
Sbjct: 575 RILEDDVSFLLVKSIVAFAKEANIKVIVEYVSSKEIFDKIESLGIEYSQGFYFSIPTPFE 634


>gi|118593554|ref|ZP_01550933.1| putative diguanylate phosphodiesterase (EAL domain) [Stappia
           aggregata IAM 12614]
 gi|118433893|gb|EAV40552.1| putative diguanylate phosphodiesterase (EAL domain) [Stappia
           aggregata IAM 12614]
          Length = 730

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 167/430 (38%), Gaps = 20/430 (4%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +E +   AF D    +PN  +F       L  +        ++ +I ID++ ++    G
Sbjct: 314 LVERLDELAFLDTTLQVPNLNAFYRSFEACLKHTKR----PLSLGLIQIDRFDELIADHG 369

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           + +  + L  +   +   LK  +I+AR+      I+   +  S +       ++  +   
Sbjct: 370 LHLALECLRQMHAALSR-LKGLEIVARVGDGTLAILGDPDQLSSE------DIQAFLQQS 422

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             +   EI     + F +   S+    E+L+ A  A+ H +  G   V  +         
Sbjct: 423 YMIEGMEIAPCCRMLFRNLDKSETFPLEILREAVAALLHERAAGVGKVTHYDQKLRSDIE 482

Query: 705 VM--IKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               +K  L  AVE  + + +   P I L  +  +G EAL++W +     I   EF+ I+
Sbjct: 483 RRNVLKGALKKAVEQHDGILVYMQPKIDLESKTCIGAEALVRWQYGD-ELIMPGEFIPIS 541

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E +    A+   +L++ A  +     +       I IN++  DL        +   I K 
Sbjct: 542 ESIGATAALTEIVLQKSAEWLKETPREKG---FKISINLSMYDLNLPGFARKLLRTIEKA 598

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                  +   +E + M N   +   L  LR+ G ++ LDDFGT  S LS L  +P D +
Sbjct: 599 GMPVETFEFEVTEGIAMKNQSTAISQLQMLREAGSTIALDDFGTGYSSLSQLQALPVDVL 658

Query: 882 KFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +   T      ++   I+   K ++   +A+ I      + L  +GC   Q   
Sbjct: 659 KIDRSFVGDLTADNARHSMAAIILSTTKALDLQCVAEGIETPEQEQALASLGCTIGQGYL 718

Query: 940 VASPLGFNSI 949
              P  F   
Sbjct: 719 YGKPCPFEVF 728


>gi|313904274|ref|ZP_07837652.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313470824|gb|EFR66148.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 780

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 177/452 (39%), Gaps = 22/452 (4%)

Query: 513 IGIANDITEQKKSLEGILCN----AFQDNLTGIPNRQSFLDRLT--TILDLSATDDNLRP 566
           +G+   I + +  +     +    +  D LTG+ N++ FL  +     +  ++ D   + 
Sbjct: 183 VGMILLILDSRFRMIRSRNDLIRFSETDALTGVLNKRFFLKNVKDLREVYAASQDPMDQT 242

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++  +I   +  N+  G   G+ +L+     + E       ++R   + F ++      
Sbjct: 243 VIVACNICDMRLYNEEYGFQEGNRLLIRAADWLCENFLNR-PVSRFESDHFYLLCY---- 297

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                   +   +++     L   +  V  S G+     S+ T       A  A+   + 
Sbjct: 298 ----ESELMRFFENMEAHQLLGAGDHAVHTSFGYYGI-RSEDTEDYACDRAFFALQKVEE 352

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                     ++        +      A+   E  + Y PI+R    EI   EAL++W++
Sbjct: 353 GQLFRCYDEGMNKEYLYHKKLLALFPTALREEEFEVYYQPIVRSFTREISSAEALVRWNN 412

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
            + G I   +FM + EE  +I  ++L+M+  + +++   R++     + + +N++  D L
Sbjct: 413 KERGMIPLGDFMPLLEEHNLITELDLYMVRHVLQEVKKVREETGRI-LPVSVNLSRLDFL 471

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             ++   +  L  +      ++ +  +ES       R   +L +    G  + +DDFG+ 
Sbjct: 472 MKDMPAEICRLADEIGVEHDKLIIEITESAFALQNSRLADVLQQFHSYGFPVWMDDFGSG 531

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S L+ L    FD +KF+   +       +   +L  ++ +   +    +A+ +  E   
Sbjct: 532 YSSLNLLKDFDFDLIKFDMRFVRDLATHMQGRILLGKLVELVDELGMQTLAEGVETEEQR 591

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             L  MG   +Q    + P     +  L++++
Sbjct: 592 DILENMGVQRMQGFLYSRP---EKMAYLIEQQ 620


>gi|118582207|gb|ABL07482.1| limonene hydroxylase CD6-1 [Enterobacter cowanii]
          Length = 591

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 190/434 (43%), Gaps = 11/434 (2%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E        D +TG+PN+   L  +  +   + T +     +  ID+ +  ++    G+A
Sbjct: 158 EAWHYAGLTDAITGLPNKLHLLRDIQLLNAANDTAERNLILIDCIDMPRAFELARTRGMA 217

Query: 587 VGDDVLVSLTRRI--GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             +++L  +   +           L  ++  RF  +L   ++++     A  ++   A  
Sbjct: 218 PVENLLRDMAIMLPLRLRPLKCGKLYMVATGRFA-LLTRASDNITACAIASRLQGVSAE- 275

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                  +         ++    +++ E+L  A  A++    +    +    +    +  
Sbjct: 276 -LEPGITVEFRVHTAGKNFIPGDVSAREVLNKAVHALHERIRQNTFQLPETIIDEDAAAM 334

Query: 705 VMIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            ++ ++L  A++ +   LYLVY P + L  +  VG+EALI+W HP+ G +S   F+  AE
Sbjct: 335 PVLMKELSQAIDGNLSGLYLVYQPKMCLQTDAPVGIEALIRWRHPQKGELSPGMFIPFAE 394

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +++ +  +++  +   + +W        + + IN++ +D+      + ++A + +  
Sbjct: 395 QAGLLQDLTGWVIANVITQLAAWHALG--LALPVSINVSIQDISAPGFADSLEARMIRAR 452

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S + +   E+  +     +   L  L+  G  ++LDDFGT  S +SYL  +P D +K
Sbjct: 453 LPTSLLGIECLETERIIESAAALKGLEMLKLRGFPISLDDFGTGYSNISYLRRMPIDIIK 512

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + SL++  +E      I RSII M K ++  ++A+ +      + L + GCD  Q    
Sbjct: 513 LDQSLISKLSEDTASRIIARSIIGMLKELDYVVLAEGVENAQTGETLQKYGCDQAQGYLY 572

Query: 941 ASPLGFNSILKLLK 954
           A PL    +   L+
Sbjct: 573 ARPLPAQEMSSWLE 586


>gi|239994504|ref|ZP_04715028.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Alteromonas macleodii ATCC
           27126]
          Length = 375

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 142/378 (37%), Gaps = 12/378 (3%)

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD ++  + R I   L     LARL G+ FG+I    +      +    +    A 
Sbjct: 1   GHKAGDVLIKDVARLIENTLLPNAQLARLGGDEFGVIYSDLDADAVYLNAVKILNAVQAY 60

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                 R   +  SIG      S ++S + L  A+ A Y AK +G N V  +        
Sbjct: 61  RFMWDNRIFNLGVSIGMVVCDDSNVSSGQYLSMADAACYFAKEQGRNQVHRYNKDDESMQ 120

Query: 704 RVMIKED----LCLAVENSELYLVYH---PIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           R   + D    +  A+E     L Y    P+ +  D      E L++        +  + 
Sbjct: 121 RYQRELDWVSSINNALEEGRFELYYQSLRPLSKASDG--HYYEVLLRLREKDGKIVEPAN 178

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE   M   ++ +++    + +    +          IN+    L D +    +  
Sbjct: 179 FLPTAERFEMNVNVDKWVVTNTFKWLSENPEHLAELR-RCSINLNCHSLADRDFTLFILN 237

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                    ++I     ESV +   E +   +    ++G S  LDDFG+  S  SYL  +
Sbjct: 238 AFETFNIPYNKICFEVIESVAIIKMEDTLAFMRTFNRLGCSFALDDFGSGFSSYSYLKSL 297

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + VK +G  +          A++ SI  +AK +    + + +  E  + +L +MG D+
Sbjct: 298 PVNQVKIDGMFIKDMLNDSVDTAMVASINDVAKAMGMQTVGEFVENEGTMAQLGKMGVDF 357

Query: 935 IQDSHVASPLGFNSILKL 952
            Q   VA P        L
Sbjct: 358 AQGYSVAKPAPLREFTPL 375


>gi|315127197|ref|YP_004069200.1| EAL domain protein [Pseudoalteromonas sp. SM9913]
 gi|315015711|gb|ADT69049.1| EAL domain protein [Pseudoalteromonas sp. SM9913]
          Length = 742

 Score =  291 bits (746), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 189/440 (42%), Gaps = 17/440 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D    + NR      LT  +      + L+  +++ DI ++ +     G   
Sbjct: 314 RLTELAYTDVSLNLQNRNW----LTREIKNMNAQERLKTRLVIFDIYQFDEKAFTFGHEF 369

Query: 588 GDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            + ++  + + I +     D  +A +S   FG+++  + +      +             
Sbjct: 370 CNKLMKLVYQSIVDSFTRYDPRIALISNKAFGMLVSVDFDISDAVSYFQN-----KQKFE 424

Query: 647 LLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDR 704
           + + +  +   I       +  +T  +++  AE ++  ++ ++      +   +   + R
Sbjct: 425 IEQVKQYIDVRILELKLNVALNLTPEKVISLAESSLNSSQLNQTKYIQHTEEKTDQITRR 484

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +  +L  A+ N  L +   P I L   +  G EAL +W       +   EF+ +AE  
Sbjct: 485 YELMAELRTAIGNKSLQVALQPKISLSTLKPAGFEALARWQRADGSFVRPDEFIELAETA 544

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  ++  + E+I   I   ++Q     + +  N +S DL++    E ++  I +    
Sbjct: 545 GLINELDHVIFEKILETINQLKEQG--CNLPVAFNASSYDLVEPSYFEQIKTKIEEYNIL 602

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS ++L  +E+  + N    +  L R   +G+ +++DDFGT  S L+++  IP  ++K +
Sbjct: 603 PSMLELEVTETQAISNYNLIKEALERFIALGMKVSIDDFGTGYSSLAHINEIPSTSIKID 662

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              ++     +    +++ I+ +A     ++IA+ +  E + + L + GC+  Q  + + 
Sbjct: 663 RYFVSDLEFNDNNQYMIKMILSLANQFNFSVIAEGVENEFEAQWLHQQGCETAQGYYFSK 722

Query: 943 PLGFNSILKLLKERFPLVKN 962
           PL    ++  LK +F + KN
Sbjct: 723 PLFLKDLIVWLK-QFEVSKN 741


>gi|268680439|ref|YP_003304870.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618470|gb|ACZ12835.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 470

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 172/429 (40%), Gaps = 27/429 (6%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            KK    +  N + D  T +PNR  F   L     LS + ++   T+++I+ID ++  N 
Sbjct: 56  HKKLKSRLKYNLYTDFNTKLPNRLHF---LKEAKKLSQSHES---TLILINIDSFQTTNT 109

Query: 582 VLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM-RK 639
             G A GD  L ++   +   L      L +   + + I + +  ++  +  +   +   
Sbjct: 110 FYGHAFGDAFLKTIAHWLKNNLPPIEATLYKFEADIYAIFIPAPFSTYNLQKYLKKLSLH 169

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFR 696
                I     EI  T SIG    T +      +LK A +A   AK++      + ++  
Sbjct: 170 ITKERIICRGIEIDTTLSIGATQGTKN------LLKLASIACKEAKNKRLPYLIYDKNSH 223

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                   + +   L  A+    +   + PI+ L + EI   E L++    +      S+
Sbjct: 224 KEKEYHYNITMNHTLKEALAKDRVVPFFQPIVNLHNGEIEKFETLMRIHKEEKEYYLPSD 283

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IA+   +   +++ ++++         +          IN++  D+ +      +  
Sbjct: 284 FLEIAKHSKIYSKLSMALIQKAFETFQISSNSF-------SINLSYLDMTNIVTKTFILE 336

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +    P  +     ES  + N E     +  ++  G  + +DDFG+  S    L  +
Sbjct: 337 KLKEFNVGP-WVIFEILESDGIENYEAIATFVEEVKAYGAQIAIDDFGSGYSNFERLNEL 395

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +GSL+      +    I+++I+  A+++    IA+ ++    +  +  +G DY
Sbjct: 396 RVDYIKIDGSLIKNLDRNDDTKVIVKNIVRFAQDLGIKTIAEYVHSADILACVKELGVDY 455

Query: 935 IQDSHVASP 943
            Q  ++  P
Sbjct: 456 AQGYYIGKP 464


>gi|149203003|ref|ZP_01879974.1| diguanylate cyclase, putative [Roseovarius sp. TM1035]
 gi|149143549|gb|EDM31585.1| diguanylate cyclase, putative [Roseovarius sp. TM1035]
          Length = 505

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 178/417 (42%), Gaps = 12/417 (2%)

Query: 551 LTTILDLS---ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           L   +  S         R   +++ ID+++ +    G+A  D V++    R+  +L+  D
Sbjct: 75  LRAAIADSLSNTRQGGTRTACLLLQIDEFETLTHRHGLAAADRVILQSLERLARMLRPAD 134

Query: 608 ILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS-WT 664
            L  L   R G++L  +       +   A  +R ++A PI L    + ++AS+G      
Sbjct: 135 QLFDLGDGRLGVLLAPKPGLTLGPLLALAERLRTALAEPIALDATTLHISASLGLCLDAQ 194

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYL 722
           +   T++ +      A++ A+  G   + ++             + +++  A++   L  
Sbjct: 195 APARTATALYDACHTALHEAQRHGPAAIRAYGRGMAAPTPPPRALAQEVTTALQEGRLIT 254

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + P I     +I G EAL +W HP  G I+ +EF+ +      ++ +   ML    R +
Sbjct: 255 WFQPQICTDTGQITGFEALARWQHPTAGLIAPAEFLPLLAASGRMEVLGDAMLANALRAL 314

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            +W       P  + +N++ ++L +  L E     + +      R+ +   E+VV  + +
Sbjct: 315 QTWDHLGLDIPC-VGLNLSPEELRNPTLPEKFAWELDRCDLPAHRLVIEVLETVVATSAD 373

Query: 843 RSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAIL 899
                 +  L ++G  + LDD+GT  + L+ +     + +K + S +T       +  ++
Sbjct: 374 DVITRNIAALARMGCPIDLDDYGTGHASLATIRRFAVNRLKIDRSYVTAIDRDPDQQRMV 433

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +I+ MA  +    +A+ +    ++  L ++GC ++Q   +A P+   +    +   
Sbjct: 434 GAILSMADRLGLATLAEGVETAGELAMLAQLGCAHVQGFGIARPMPLAATPDWIAAH 490


>gi|325474463|gb|EGC77650.1| GGDEF domain/EAL domain-containing protein [Treponema denticola
           F0402]
          Length = 1004

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/659 (18%), Positives = 240/659 (36%), Gaps = 56/659 (8%)

Query: 316 ASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL 375
           AS++ +                 L +    L       ++  +  +L N   +  L    
Sbjct: 373 ASVLSFSVTLKKIFWQSVLVSGFLFLAGSYLSSKHISNMFTKVVLKLQNSDPKKMLSIEK 432

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSD--GERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           + I  +    V    L+   F+         E+  +        V++ +I+   V     
Sbjct: 433 MNITEIDTLIVAIEKLSASVFNAASRVSTIIEKLQV-----PIGVFEHNILMGTVFCNSI 487

Query: 434 IATILG---LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
              +      +  S+      +    H     N +    +      G             
Sbjct: 488 WFKLFNIQKYSGDSVLNTDEFYKLLDHYEYYINSKDDTKTIYAIPTGEH----------G 537

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
           +  W+       ++        +GIA DIT++ +  + +      D LTG+ NR +F  +
Sbjct: 538 KVRWIRFMQTKENDK------ILGIALDITKEVEDRKKLELQMNYDELTGLYNRAAFDRK 591

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           +T +             +++ D+D  K +ND  G A GD  L++  +++  L +   ++ 
Sbjct: 592 ITKVF---KQKHLGICALVMWDLDNLKYLNDSFGHAYGDTHLMAFGKKLAMLQQERCLVC 648

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREIT-VTASIGFASWTSSKI 668
           R SG+ F     + + S +I     A  K I   PI L   E + +  S G A +     
Sbjct: 649 RRSGDEFYSFFYTFSTSDEIKLILTAFWKDIQETPITLPNGETSKLRVSAGLAWYPYDAD 708

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHP 726
             +++++ A+ AMY  KH     +  F +  ++ + +MI   E L   ++ + +     P
Sbjct: 709 NQADLVRYADFAMYDVKHSFKGSLHEFNLDVYKKNYIMIHGTEALNQMLDRNLIEYALQP 768

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI-ISW 785
           I+     +I G E L++   P+    S  + + +A+    +  +                
Sbjct: 769 IVTSGTGDIYGYEMLMRSSAPE--FKSPEDILRLAKAQSKLHKLEELTFFGAMDTFVKKI 826

Query: 786 RDQANMPPIFILIN-IASKDLLDNELCEGMQALISKTLYSP--SRIKLSFSESVVMG-NP 841
                     I +N I+S+ L D +  E  +         P  S I L  +ES  +  N 
Sbjct: 827 ERGEISKDTKIFLNTISSQVLSDAKFFEFEEKF------KPYLSNIVLEITESEPLNTNF 880

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAIL 899
              +    R+R     + +DDFG+  S  S L ++  + VK + S++    +   +  +L
Sbjct: 881 YDLKN--ERIRNWNAMVAIDDFGSGYSNESSLLFLSPNLVKIDMSIVRDVHKSLDKQNVL 938

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS------PLGFNSILKL 952
            +++  AK  +  I+A+ +    +I  L R G D  Q    A       P+    I +L
Sbjct: 939 ENLVSYAKKRDIIILAEGVETIDEIDVLLRFGVDLFQGYFFAKPSFDITPIPEERIQEL 997


>gi|152985522|ref|YP_001345503.1| Urf2 [Pseudomonas aeruginosa PA7]
 gi|150960680|gb|ABR82705.1| Urf2 [Pseudomonas aeruginosa PA7]
          Length = 333

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 5/248 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  AVE  +L L Y P++ L    IVG EAL++W HP  G +   +F+ + E   ++  
Sbjct: 13  ELAQAVERGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPE 72

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R +  WR      P  + +N+++  +   +    ++ +++        ++
Sbjct: 73  IGAWVLGEACRQMRDWR-MLAWRPFRLAVNVSASQVG-PDFDGWVKGVLADAELPAEYLE 130

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + 
Sbjct: 131 IELTESVAFGDPAIF-PALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVA 189

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G     +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+   
Sbjct: 190 GLANDRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPAA 249

Query: 948 SILKLLKE 955
           +    + +
Sbjct: 250 AFAVFVSQ 257


>gi|229520689|ref|ZP_04410112.1| hypothetical protein VIF_001214 [Vibrio cholerae TM 11079-80]
 gi|229342244|gb|EEO07239.1| hypothetical protein VIF_001214 [Vibrio cholerae TM 11079-80]
          Length = 818

 Score =  291 bits (745), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 200/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+    ++ L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLERVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F  +L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSTQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L SE N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDSEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++ ++  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDEWICGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLE 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|307726106|ref|YP_003909319.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
 gi|307586631|gb|ADN60028.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1003]
          Length = 777

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 181/468 (38%), Gaps = 36/468 (7%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + W+     P +     ++ + G            + +   A  D LTG+ NR++F+ + 
Sbjct: 163 WMWVAAIGMPTA-----VVFHFGFYWFRRNHFLLEDRLAQLAATDPLTGLQNRRAFVTQA 217

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L   A    +    + +DID +K +ND  G AVGD  L  + + + +     D ++R
Sbjct: 218 ERRLADVAQGGQVSA--IFLDIDNFKSLNDRFGHAVGDLALRQVAQVLLDGTSRTDSVSR 275

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G  F ++  S N      + A  +R +IA           +TAS G A    +     
Sbjct: 276 IGGEEFAVL--SSNGLRGALELAEQLRGAIAALERPDG---NLTASFGVAE-HRTGENIM 329

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--------LCLAVENSELYLV 723
            +L  A+ A+  AKH G N V + R       +++I++         L    E+  L   
Sbjct: 330 VLLDRADEALLRAKHSGRNRVCAERPLPDAPLQLLIEDACGAAGTAGLRHKWEDYYLTSH 389

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR--D 781
           + P+  L  ++ +G EAL++ +      +  +               +  +L+R +    
Sbjct: 390 FQPLFSLSHQKQIGFEALLRGELEDGTLLPPAVLFAPKPSS------DEGVLDRASHAVH 443

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV--VMG 839
           + + R        ++ +NI     +     + +  ++ +   +P ++ L   ES    + 
Sbjct: 444 LANARASLPGEG-WLFLNILPATFVAEGYADELAGIVQRVGLAPEQLVLEILESHGGSVD 502

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAI 898
           +  R+  L    R+ G  + +DDFG   S L  L  I  D VK +G L+  +       I
Sbjct: 503 DMSRAAAL---YREHGFVIAVDDFGAGQSNLDRLLRIRPDIVKLDGELIRATGHGTGQPI 559

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           L  ++ +       ++ + +    ++        D+ Q   +  P   
Sbjct: 560 LPKLVSLLHQAGMLVVVEGVETTEELILAVESNVDFAQGYLLGRPAPE 607


>gi|313905119|ref|ZP_07838488.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
 gi|313470022|gb|EFR65355.1| diguanylate cyclase/phosphodiesterase [Eubacterium cellulosolvens
           6]
          Length = 862

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 177/428 (41%), Gaps = 23/428 (5%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+PN   +++ L T ++          T +  ++  +  +N   G+  G++V++     
Sbjct: 429 TGLPNSGGYINELATRIN---EQSVGLYTAIYFNVVGFGVVNARFGMREGNEVILRYADA 485

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS- 657
               L+  ++LA   G+ F +++   N          ++   ++       ++  +T   
Sbjct: 486 FRNRLEEGEVLAHFGGDNFALLIYKGNYPE-----FQSLLNGVSTFAVQQGKKYPLTIRS 540

Query: 658 -IGFASWTSSKITSSEMLKNAELAMYHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLAV 715
             G      +  +  +++     A+  A+   GG  + +  +         I+     A+
Sbjct: 541 AAGVMHLYDTIRSPGQVMSGIGFALNIARESHGGQVIMTREMEVRSHRIKEIENLFPTAL 600

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
             SE  ++Y P + +    I+G EAL  W   +        ++ I E    IK +++++ 
Sbjct: 601 MRSEFEVLYQPKVDISTGAIIGAEALSVWGTGELRLEP-DSYIPIIERNGQIKELDMYIF 659

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLL----DNELC-EGMQALISKTLYSPSRIKL 830
           E++ RD++SWR       + + +N + KD      +  L  + +    +K       + +
Sbjct: 660 EKVLRDMLSWRSAGYEM-LPVSVNFSRKDFGGKKDEPRLLADKIAEKTAKYGIRNEELVV 718

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+      +     + RL + GI  ++DDFGT CS    +  +P D +K + S    
Sbjct: 719 EVTETSNSVEMQSVDTFIRRLAEHGIRTSVDDFGTGCSSFELVKDLPVDEIKIDRSFFHC 778

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +   R    I+RSI+ MA ++  + + + +      + L ++GC+  Q      P+    
Sbjct: 779 AVPDRRNRVIIRSIVTMATSLGISTVMEGVETVQQAELLNKIGCNCAQGFLYDPPM---E 835

Query: 949 ILKLLKER 956
           + + L+ R
Sbjct: 836 MEQFLQRR 843



 Score =  120 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 12/212 (5%)

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E R    D +     ++ + +    G     I    DITE  K  E     +  D LTG 
Sbjct: 82  EVRCLQHDGKNRICEVKAQYIK--AGSRKLCIESILDITELYKLKEKFRTMSITDALTGA 139

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            N     +      +     +++  + M+ D D  KK+NDV G + GD  L      +  
Sbjct: 140 YNLNYMRE------NNYGKAEDMPVSYMLFDADNLKKVNDVYGHSRGDQYLKDCVHILMA 193

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            +     ++R+ G+ F II+ +         +   +R+S A        E  V  S GFA
Sbjct: 194 NIPKRGFVSRIGGDEFAIIIPNCTEKE-CEKYYQRIRRSAAR---THGTENEVGLSGGFA 249

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              S + +   +++ A+  +Y  K +    ++
Sbjct: 250 VRLSEEESEKTVMEKADQMLYGNKQKVKKCIQ 281


>gi|325922250|ref|ZP_08184035.1| EAL domain-containing protein [Xanthomonas gardneri ATCC 19865]
 gi|325547284|gb|EGD18353.1| EAL domain-containing protein [Xanthomonas gardneri ATCC 19865]
          Length = 606

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 174/411 (42%), Gaps = 6/411 (1%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ N +     L  +   S     +   + V D     +    LG+   ++++   +  +
Sbjct: 183 GLLNARQLQSDLDALAFGSHCVPTIASFIEVYDTQAANEARQALGMQPLEELIRHASYVL 242

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T   G
Sbjct: 243 TRALRGKATVYHVAPMRFAFFLLN-SAPDEMEDLLLDLRDMLHQPMDAAGVPMSLTFHAG 301

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAVENS 718
              +   +  ++++++   +A+  A +        S            +  D   A++  
Sbjct: 302 VVRFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSALHDDAIQRSYRLALDAERALDAG 361

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +  LV+ P I L D  + G EAL++W H   G I   EF+ + E+  ++  +  +++E  
Sbjct: 362 DFRLVFQPRIDLADLSVTGFEALLRWHHASLGPIGPDEFIPLFEKTALMCTVTNWVIETA 421

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  WR Q       I IN++S+D  +  L   +     +     SRI+L  +E   +
Sbjct: 422 LVQLAKWRAQGLD--FSISINLSSRDFGNLNLAADVINRCRELAIPTSRIELEITEGRWL 479

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--I 896
            +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K    
Sbjct: 480 RSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKAGMQ 539

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               +++ +A  +    +A+ I    +I  L   GCD  Q   ++ P+  +
Sbjct: 540 MRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLSRPMEAH 590


>gi|116331987|ref|YP_801705.1| Signal transduction protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125676|gb|ABJ76947.1| Signal transduction protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 547

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 175/416 (42%), Gaps = 6/416 (1%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           T +PN++ FL+     +    +  N   +  +I I     I      +  + +   +  R
Sbjct: 135 TNLPNQKYFLNHFGKQITEDESAMNGHFS-FLISISNPDSIISKESNSYFEYIHTKVADR 193

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           + + L   D L R+  ++F I     ++ +K   FA  ++     P    ERE  +  +I
Sbjct: 194 LKKYLNRNDHLFRIENDKFLISSAHADSEIKAEWFAECIQMLFDFPFTYEEREFHLNVNI 253

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVE 716
           G+  + S   +    L+  + A+  +   G N +  +  ++     ++  I+ DL   + 
Sbjct: 254 GYTKFNSKSGSDMNALEILKEALQRSCLLGPNSLFYYDQNAIALTFEKAKIEIDLRKVLN 313

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            +EL + + PII L +     +E L++W+HP+ G +    F+ IAE    IK I  +M+ 
Sbjct: 314 RNELEIHFQPIIDLKENRFFSMETLVRWNHPEKGKLLPGSFISIAESSSFIKTIGEWMIW 373

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R   +         I + +NI+ K L D  +   ++   +     PS I L   E  
Sbjct: 374 ETFRYYEN--SILKSENISLSLNISPKQLGDKNIFPLLKEASNFYKIQPSHIILEIVEDS 431

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKR 895
                 +   ++  L+  G    +DDFG   S L  L ++P D +K +   +        
Sbjct: 432 FDSREPQIGKVITSLKDYGFKFAIDDFGKGYSSLGRLIHLPIDYIKLDKIFLFNYFQTST 491

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            A++ S++ + + +   II + +  EI  K L  + C++ Q  + + P+  +   K
Sbjct: 492 RAVITSMVNLVQAMGKAIIVEGVENEIQHKLLRELNCNFGQGYYYSHPVEIDLAEK 547


>gi|166712145|ref|ZP_02243352.1| hypothetical protein Xoryp_11985 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 603

 Score =  291 bits (744), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 179/428 (41%), Gaps = 6/428 (1%)

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
             +G+ N +     L  +   S     +   + V D     +    LG+   ++++   +
Sbjct: 177 PQSGLLNARQLQSDLDALAFGSHCLPTIAAFIEVYDTQAANEARQALGMKPLEELIRYAS 236

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T 
Sbjct: 237 YVLTRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLRKPVDAAGVPMSLTF 295

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  +++ ++   +A+  A +        S            +  D   A+
Sbjct: 296 HAGVVRFAPQQPDTNDAMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEKAL 355

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  +  LV+ P I L +  + G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 356 DAGDFRLVFQPRIDLANLSVTGFEALLRWQHSSLGPIGPDEFIPLFEKTALMCTVTNWVI 415

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E     +  WR Q       I IN++S+D  +  L   +           +RI+L  +E 
Sbjct: 416 ESALVQLAQWRAQGLD--FSISINLSSRDFGNINLAADVINRCKDLSIPTARIELEITEG 473

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K 
Sbjct: 474 GWLRSNVETVSRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIANKA 533

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +
Sbjct: 534 STQMRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLARPMEAHLVADYV 593

Query: 954 KERFPLVK 961
           ++   L +
Sbjct: 594 EQTAALQR 601


>gi|254560870|ref|YP_003067965.1| hypothetical protein METDI2423 [Methylobacterium extorquens DM4]
 gi|254268148|emb|CAX24037.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 327

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 7/257 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +D   A+   E  L Y PI+      I G EAL++W HP  G +S ++F+ +AEE   I
Sbjct: 61  AKDFRAALAGGEFSLAYQPIVSAATGAITGCEALLRWQHPFLGPVSPADFVPLAEETGAI 120

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + I  ++LE   R    W D        + +N++   L D    + + A +  +  +  R
Sbjct: 121 RPIGAWVLEAACRQAAVWPDF-----CRVSVNVSPVQLQDPGFADRVVAALQASGLAAGR 175

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E V+MG+   +   +  LR +G+S+ LDDFGT  S L YL    FD +K + + 
Sbjct: 176 LELELTEGVLMGDVAVALEGVAALRALGVSIALDDFGTGFSSLGYLQRFAFDRLKIDRTF 235

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G  E R +  ++R++  +A++    + A+ I  E + + L  +G   +Q    + P+ 
Sbjct: 236 IRGLGEARESWFLVRTMHEIARHFGMAVTAEGIETEEEARMLREIGATELQGFLFSRPVA 295

Query: 946 FNSILKLLKERFPLVKN 962
                 LL E+   +++
Sbjct: 296 GAVATALLSEQAHRLRS 312


>gi|319938416|ref|ZP_08012810.1| hypothetical protein HMPREF9488_03646 [Coprobacillus sp. 29_1]
 gi|319806332|gb|EFW02999.1| hypothetical protein HMPREF9488_03646 [Coprobacillus sp. 29_1]
          Length = 992

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 111/650 (17%), Positives = 243/650 (37%), Gaps = 49/650 (7%)

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITK-----RLDNDIIQPALVGGLVLIVIL 381
           +Y   +       ++ A+I++    +   +A         L   I   +     V I   
Sbjct: 361 LYGFTEHLMSVFYVVIAFIILIGAALSFVLARFIAEPVIDLARRISYSSKAVSHVNIEKT 420

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQS--LAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
               + Q + A    S  +     R +  + +  +    ++ D  +D +  T     I  
Sbjct: 421 NIIEIDQLIQAIEKMSNDVLDSATRFTNIIRLANTNLAGFEVDFDKDELFLTDGFFDIF- 479

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
                M   +      +   +      + D+     +   +Y + +++ + +  ++ +R 
Sbjct: 480 -----MMNHVDT--KTMTPKEFKKLFQVFDNCASPTQNANEYIYHIQSQN-ENIYLRLRY 531

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                   +  +Y+G+  +I++  K  + I      D LTG+ NR++F  ++  +  +  
Sbjct: 532 TQ------NQHKYVGLVEEISDMIKERQVIEHERDHDVLTGLINRRAFQRKMKRLFSIDV 585

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
               +   ++++D+D  K IND  G   GD  +        +      I++R SG+ F +
Sbjct: 586 QKLKI-AALVMMDLDNLKSINDKYGHDCGDAYIKGAANIFKKFSPESTIVSRTSGDEFYL 644

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNA 677
                +    I +    +++ IA  I      +E+ V  S G A + S      E+ + +
Sbjct: 645 FYYGYDTKEDINEQLKILKQGIAQSILTLSNHKEVKVYLSGGIAWYPSDSTQFEELQRYS 704

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL--CLAVENSELYLVYHPIIRLMDEEI 735
           + AMY  KH G   +  F V+ + ++  ++K+ L     ++   +   + PII +    +
Sbjct: 705 DYAMYSVKHSGKGEIAMFNVTDYENNSYIMKKRLDYYQLIDGRMIKYAFQPIIEMHTGNV 764

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI- 794
            G EAL++  HP      + E + +A+    +  I     +   R    +    ++    
Sbjct: 765 FGYEALMRSTHPT--LRDTQEIISLAKLELQLNKIETLTWQEALRAYAEYYRNGDVSSTQ 822

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR---- 850
            I IN  S  +L       ++ L  K      ++ L  +E     + E ++         
Sbjct: 823 KIFINSISNQIL-PLF--EIENLEKKYSDILGQVVLEVTE-----DEEHNKNCFEAKKEI 874

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKN 908
           L        LDD+G+  +    L  +  D VK +  L+    +   +  I+ +I+     
Sbjct: 875 LTHWNAETALDDYGSGYNSNRNLLIVNPDYVKIDMDLIRDIDKDIDKQKIVENIVAYCHE 934

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS-----PLGFNSILKLL 953
               +IA+ +    ++     +  DY+Q  + A      P+   + +K L
Sbjct: 935 RNKKVIAEGVETYQELTVAFYLNIDYVQGFYFAKAEFVPPVPDENAVKAL 984


>gi|31795174|ref|NP_858032.1| hypothetical protein pB10p61 [uncultured bacterium]
 gi|56550658|ref|YP_161724.1| hypothetical protein RMe0102 [Cupriavidus metallidurans CH34]
 gi|94152593|ref|YP_581995.1| diguanylate phosphodiesterase [Cupriavidus metallidurans CH34]
 gi|116054402|ref|YP_789371.1| hypothetical protein PA14_15435 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|156144900|ref|YP_001427361.1| hypothetical protein pMATVM7_27 [Pseudomonas aeruginosa]
 gi|31746418|emb|CAD97548.1| hypothetical protein [uncultured bacterium]
 gi|56410364|emb|CAI30246.1| hypothetical protein RMe0102 [Cupriavidus metallidurans CH34]
 gi|93358959|gb|ABF13045.1| Diguanylate phosphodiesterase (EAL domain) from Tn4378(mercury
           transposon) [Cupriavidus metallidurans CH34]
 gi|94404542|gb|ABF17931.1| hypothetical protein [Bordetella bronchiseptica]
 gi|115589623|gb|ABJ15638.1| hypothetical protein PA14_15435 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|156104623|emb|CAO91754.1| hypothetical protein [Pseudomonas aeruginosa]
 gi|168986680|gb|ACA35069.1| unknown [Proteus mirabilis]
 gi|197258074|gb|ACH56220.1| unknown [Achromobacter sp. AO22]
          Length = 329

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 5/248 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  AVE  +L L Y P++ L    IVG EAL++W HP  G +   +F+ + E   ++  
Sbjct: 13  ELAQAVERGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPE 72

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R +  WR      P  + +N+++  +   +    ++ +++        ++
Sbjct: 73  IGAWVLGEACRQMRDWR-MLAWRPFRLAVNVSASQVG-PDFDGWVKGVLADAELPAEYLE 130

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + 
Sbjct: 131 IELTESVAFGDPAIF-PALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVA 189

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G     +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+   
Sbjct: 190 GLANDRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPAA 249

Query: 948 SILKLLKE 955
           +    + +
Sbjct: 250 AFAVFVSQ 257


>gi|160931495|ref|ZP_02078891.1| hypothetical protein CLOLEP_00328 [Clostridium leptum DSM 753]
 gi|156869560|gb|EDO62932.1| hypothetical protein CLOLEP_00328 [Clostridium leptum DSM 753]
          Length = 995

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/668 (16%), Positives = 243/668 (36%), Gaps = 64/668 (9%)

Query: 320 LYYTYFIIYHGMKGYERAV--LLIPAWILIFIWFIGLWMAI---TKRLDNDI-IQPALVG 373
           +        +     + A     +   + + I    +++ I   T  + + +     L  
Sbjct: 359 VLMGVIENRYLFGAADSARTTFFLAVALTLLIGAASIFLTIRSTTHPIQSLVNQVRGLNP 418

Query: 374 GLVLIVILIGFTVIQHVL-ATGYFSQGIFSDGERQSLAVLGSG--DIVWDWDIVRDRVTT 430
              +    I       +  A     + +     + S  V  +      +++ I    V  
Sbjct: 419 RQPVRFQRIHIREFDELTNAIETLGEEVADSASKLSQIVEMASFPLGAFEYTIGGREVYF 478

Query: 431 TPDIATIL--GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
           T +   I   G   G  + P+  +   +           +D  +   + +    FR+  +
Sbjct: 479 TTNFFKIFLIGQEKGLQYLPLDRFKELMLP-----IAEYIDPALSTDKVK---TFRLTDS 530

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
                W+ ++   + +S       +GIA D+T++    + I      D LT + NR++F 
Sbjct: 531 QGSIVWVRLK---LIDSE---QHMLGIAEDVTQEMVEKQKIEYERDYDLLTNLLNRRAFH 584

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
            R+  +             ++++D+D  K IND  G   GD  + +    +        +
Sbjct: 585 SRMRQLFQNRGRMK--VAALIMMDLDNLKYINDTFGHDYGDQYIRAAANALRIGSPENAV 642

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLER-EITVTASIGFASWTSS 666
           ++R+SG+ F + L   ++  +  +    ++KSI    + L  R    + AS G A +   
Sbjct: 643 ISRMSGDEFYLFLYGYDSEDQARERIDRLQKSIQTSTLELPNRPSFRIRASAGVAWYPKD 702

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVY 724
             +  ++++ A+ AMY  K+        F ++ +     ++    +L   +E   L   +
Sbjct: 703 SESYEQLIRYADFAMYSVKNMTKGRFAEFNITDYEKSAYLLHNSEELNRLIEEELLDYYF 762

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI+     ++ G EAL++         +  E + +A+    +  I         +    
Sbjct: 763 QPIVNARTGQVFGYEALMRPRLTSLE--TPLEVLSLAKSQGKLYQIERLTWFLALKSFTG 820

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALIS-KTLYSPSRIKLSFSES-------V 836
           +  +   P   + IN     + +  L E  +  +  +              S        
Sbjct: 821 F--KNIPPDCRLFIN----SIANQGLSESDEKALEAQYGPYLG--------SLVVELTEE 866

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
                  +R  +  L++ G  + LDDFG   +    L  +  D +K + S++    +   
Sbjct: 867 EERVESYTRKKISFLKRHGGQVALDDFGAGYNGEVSLLAVRPDFIKVDLSIVRNCHQDKN 926

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV------ASPLGFNS 948
           R  ++ +II  A+   + +IA+ +    ++  +  +G DY+Q  +V      + P+  + 
Sbjct: 927 RQEMISNIISFARKNNSLVIAEGVQSREEMDTVISLGVDYLQGYYVGVPSLTSQPIP-DK 985

Query: 949 ILKLLKER 956
           ILK +  R
Sbjct: 986 ILKEITSR 993


>gi|34915808|emb|CAD83842.1| Urf2 protein [Pseudomonas sp. A19-1]
          Length = 328

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +L L Y P++ L D  I G EAL++W HP+ G +   +F+ +AE   ++  I  ++L 
Sbjct: 20  RGQLDLHYQPLVDLRDHRIAGAEALMRWRHPRLGLLPPGQFLPLAESFGLMPEIGAWVLG 79

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  W+      P  + +N+++  +      + ++ +++        +++  +ESV
Sbjct: 80  EACRQMHKWQ-GPAWQPFRLAVNVSASQVG-PTFDDEVKRVLADMALPAELLEIELTESV 137

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
             GNP         LR IG+    DDFGT  S L +L   P  T+K + S +       +
Sbjct: 138 AFGNPALFASF-DALRAIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVARLPDDAR 196

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+R++I +A  +   ++A+ +     +  L + GCD +Q    A P+   + +  + 
Sbjct: 197 DQTIVRAVIQLAHGLGMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVN 256

Query: 955 E 955
           +
Sbjct: 257 Q 257


>gi|56460884|ref|YP_156165.1| disrupted signaling protein [Idiomarina loihiensis L2TR]
 gi|56179894|gb|AAV82616.1| disrupted signaling protein (xGGDEF and EAL domains) [Idiomarina
           loihiensis L2TR]
          Length = 443

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/434 (21%), Positives = 186/434 (42%), Gaps = 9/434 (2%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             +      + D  T +PN   F  +   ++  S  +      V+V   +    +    G
Sbjct: 4   LEQENRRLRYLDTQTNLPNSDWFELQCNKLISKSDRE----FFVVVAQSESEDYLRLKYG 59

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            +V   +L S   R+ +  + P + A ++ N+   IL       ++ D  + ++ S+   
Sbjct: 60  ESVIRRLLASSYSRLKKHRQHPRLTATIALNKLVFILPK-TVENELKDVLLDIKNSLDKE 118

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                 +   +   G A +     T+  ++  A  A   A      H+     S    +R
Sbjct: 119 YTFQGIKCQQSFQFGVARFPKHGETADVVVSRALEAKKFASVNQFYHLYDTENSEEFMER 178

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I   L  A++N EL + + P +   D   VGLEAL +WD P  G+IS + F+ IAEE 
Sbjct: 179 HEISILLDEAIQNDELDVCFQPKV-TADGTCVGLEALARWDSPVLGSISPAIFIPIAEEY 237

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            MI  +   +++++   I  W  + + P + + INI+  D    +    +   ++     
Sbjct: 238 RMISRLTDLIVQKVCAQISLW-KKNDFPLLPVAINISLLDFSQPDFISKLVKYLADFSVK 296

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS+I+L  +E+ +  +   S  L+  L+  G  +++DDFG   S ++ L Y P D +K +
Sbjct: 297 PSQIELELTETCLESDRVNSLELMNELKSWGFKVSVDDFGVGYSSVTRLAYYPIDKLKLD 356

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            +L+ G   + ++ ++++ I  +   ++   + + +  +  +  LT +G    Q  + + 
Sbjct: 357 RALLRGIKTSGRQYSLVKGIFNICSELKIKCVVEGVEEKSQLTRLTEIGFSEFQGFYFSK 416

Query: 943 PLGFNSILKLLKER 956
           PL      K +K  
Sbjct: 417 PLTVTRYEKHVKTH 430


>gi|153815547|ref|ZP_01968215.1| hypothetical protein RUMTOR_01783 [Ruminococcus torques ATCC 27756]
 gi|317502194|ref|ZP_07960368.1| hypothetical protein HMPREF1026_02312 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088759|ref|ZP_08337669.1| hypothetical protein HMPREF1025_01252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847189|gb|EDK24107.1| hypothetical protein RUMTOR_01783 [Ruminococcus torques ATCC 27756]
 gi|316896403|gb|EFV18500.1| hypothetical protein HMPREF1026_02312 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407282|gb|EGG86785.1| hypothetical protein HMPREF1025_01252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 540

 Score =  290 bits (743), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 90/439 (20%), Positives = 185/439 (42%), Gaps = 24/439 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             +K  +     ++ D+LTG+ NR S +       D            + +DI+  K  N
Sbjct: 123 ALQKMQKQQEYLSYHDDLTGLLNRNSLV----HYFDTVDEKKLKSIGALSVDINGLKNFN 178

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G   GD+V++ +   + E     +   RL+G+ + +++ +  +         A+   
Sbjct: 179 KEFGRDYGDEVVIRVGEVLEEYFHSGE-AYRLTGDEYLVLVEN-TSYQDFTKQVHAVHTK 236

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +          I++       +W    I   +++ NAE+ M   K +       ++    
Sbjct: 237 LD--------NISLGLVSIGYAWEKIDIEVDKLVNNAEVMMREEKRK------YYKNLQK 282

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                +IKEDL   +EN    +   P I  +  E+ G EA++++ H   G +    ++ +
Sbjct: 283 GHHEPIIKEDLLQDIENGNFIVCLVPKIDTLTGEVGGAEAVVRYHHKDLGIVDPGRYLNM 342

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
            EE  +   ++L++ E + + +  W +  ++P I + +N A   L    L + M  LI K
Sbjct: 343 LEETKLSHYLDLYVFEEVCKTLHKW-EVRDIPMIPVSVNFAGATLRQEGLADKMLHLIEK 401

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  +++  SES    N E       ++RK  + + LD FG K S  S L  + FD 
Sbjct: 402 HHVRCEYLEVEVSESSSDMNQEMLAETSSKIRKGNVRVILDHFGAKDSSFSILSLMEFDG 461

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S+++      +   + +++I + + +  ++ A  +  +     L  +GCDY Q +
Sbjct: 462 LKLDKSVISNIVGNGRSRIVAQAVIDICRQLGASVQAAGVETQDQFNVLREIGCDYAQGT 521

Query: 939 HVASPLGFNSIL-KLLKER 956
               P+   +   + L++R
Sbjct: 522 LFNKPITIETFEVRYLRDR 540


>gi|95931204|ref|ZP_01313925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132723|gb|EAT14401.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfuromonas acetoxidans DSM 684]
          Length = 496

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 98/390 (25%), Positives = 170/390 (43%), Gaps = 5/390 (1%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +D          +  ++   D     +  +     +LG     + G   N   +    
Sbjct: 45  MLADDSHFLRLYHTAPIMLHSMDDHGKILHVSDHWLRVLGYERHEVLGRSIN--EFFTEE 102

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
            R   R  + + +           ++ +     H +++      N NG  L    +  D+
Sbjct: 103 SRRRGRDEIHAKLVISGSVKDVPLQMISKQGVVHEILLSATTHYNVNGAFLCSQVVMVDM 162

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TE+++  + I   A++D LT +PNR      L   L +S  D N    V  +D+D +K+I
Sbjct: 163 TEKQRDEQRIRQLAYEDTLTQLPNRSGLEILLRQALKISQQD-NTPLAVFSLDLDHFKQI 221

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND LG  VG+ VL  + +R+ E +    I+ARL G+ F I++  + ++  +   A  + K
Sbjct: 222 NDTLGSKVGNQVLEQIAQRLKEHINDRQIVARLGGDEFVIVIPDKTSASALRLNADILLK 281

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            ++ P+ +  +E+  + SIG A     +     +L NA  AMY  K  G N    F    
Sbjct: 282 RLSEPLTINHQELFTSVSIGIAIAPQGETDVDTLLGNANQAMYQVKRNGRNDYAFFTRQM 341

Query: 700 --FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + I+ DL  AVEN+EL L Y P     + ++  LEALI+W HP +G +S  +F
Sbjct: 342 SEQALRNLQIETDLRRAVENNELELFYQPQTCSKEGKVTALEALIRWRHPNFGLLSPMQF 401

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRD 787
           + IAE    I  I  ++  +      +W+ 
Sbjct: 402 IPIAETSGQIIQIGHWVFRQACEQAQAWKR 431


>gi|87119492|ref|ZP_01075389.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Marinomonas sp.
           MED121]
 gi|86164968|gb|EAQ66236.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Marinomonas sp.
           MED121]
          Length = 560

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 190/448 (42%), Gaps = 22/448 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDR-LTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++ +SL+ I    F+D  TG+ N    L       L+     D+    ++ I  +KY  +
Sbjct: 123 KRSRSLDQINALTFKDASTGLFNEAYLLQDSFKNELET--KLDSKELGLVEIFFEKYSVL 180

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
              LG A  D  L +   RI         L  +S  RF  +     +   + +    +  
Sbjct: 181 TSSLGKASADLYLKTQLERIQAEFADLGELYVISPGRFVFLACEYESLDALVNRLQDLIN 240

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
              + + +    +     +G +   S     S  L +  +A   A            ++S
Sbjct: 241 HTKIGVEINSVSVIEELKVGVSIEKSFDKGLSAALHHVNVARLQANQFMPLSFYDDAMAS 300

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
              D++ ++ DL  A+ N EL L Y P +     ++   EAL++W HP+ G IS   F+ 
Sbjct: 301 SVVDKLKLEADLRKAILNDELILHYQPQVHAKTGKVCAAEALVRWVHPEKGMISPFHFIP 360

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALI 818
           IAEE  MI  +   ++ +    I  W++       F I +N++++ +   EL   + +L+
Sbjct: 361 IAEESGMIVELGKSVIRKATHQIELWQNSYEGEWCFPISVNVSAQHVAQPELVGYIASLL 420

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K     S +K+  +ES ++ +   +R +L  +++ G+ ++LDDFGT  S LSYL  +P 
Sbjct: 421 EKHNLKTSMLKVELTESALVEDETGTRNVLNAMQETGLKISLDDFGTGFSSLSYLLELPL 480

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIET--------TIIAKDIYGEIDIKELT 928
           D +K +   +      E+  ++ + ++ +A +++                  E  +  + 
Sbjct: 481 DQLKIDKMFVDNLVHDERSRSVFKHVVNLAHDLKLEVVVEGVED--------EEQLNLIN 532

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
           +   D+IQ  +   PL  +    +++ +
Sbjct: 533 QSNVDFIQGYYFYKPLPADDFFDVIEGQ 560


>gi|260598084|ref|YP_003210655.1| hypothetical protein CTU_22920 [Cronobacter turicensis z3032]
 gi|260217261|emb|CBA31190.1| hypothetical protein CTU_22920 [Cronobacter turicensis z3032]
          Length = 583

 Score =  290 bits (742), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 106/478 (22%), Positives = 195/478 (40%), Gaps = 29/478 (6%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA-----------------FQDNLTGI 541
             P+   +G +   IGI  D   Q    E                       F D +T +
Sbjct: 112 CAPLRTRDGSLTGTIGI-TDTVAQPFDDERARTLTLIAGLTGAWLETLNAVGFLDPVTRL 170

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT--RRI 599
           PNRQ  L  +  +    + +         ID+    ++   LG+   + +L  L    R+
Sbjct: 171 PNRQKLLADMERLAASGSAERFTLMIFDCIDMPSAYELARSLGMPALETLLNDLGPLLRM 230

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              LK   +L  ++  R+ ++L     + K      A+   +   + L    I +    G
Sbjct: 231 RLRLKNDTVLYNVATGRYALLLK--TRNQKAIRRNAAILPLVNARM-LQGINIRLNIFAG 287

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKH-RGGNHVESFRVSSFRSDRVMIKEDL-CLAVEN 717
              W   K T +E L+ A  A++ A      + V        R+    +  DL     +N
Sbjct: 288 EVGWQPEKTTPNEALRRAISALHEAIWLNKRHMVFDAGRDEKRNVDFQLLHDLSESIAKN 347

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             LYL+Y P I+L     VG EAL++W HP  G+I    F+ +A+   +++ I  +++  
Sbjct: 348 RGLYLMYQPKIKLSTNRAVGAEALLRWRHPTRGDIPPGVFIPLAQNTSLMEEITQWVIGA 407

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               +  WR +     + + +NI+  DL      + ++  + +   S + I++   E+  
Sbjct: 408 ALLQLQKWRQEGIN--LPLSVNISVSDLSRTGFADALEERVLRAGLSTNDIRIECLETEK 465

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-- 895
               E +   +  L+  G  + LDDFG   S ++YL  IP D +K + SL +   ++R  
Sbjct: 466 ALESETALNEMDMLKLRGFKILLDDFGAGYSNINYLRRIPIDIIKLDRSLTSSIAQERSS 525

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             I+R++I M K ++  ++A+ +      + L   GCD  Q    + P+    I + +
Sbjct: 526 QIIVRNVIQMLKELDYVVLAEGVEDAETARLLLEFGCDEAQGYFFSRPVEPEYIAQWI 583


>gi|21242887|ref|NP_642469.1| hypothetical protein XAC2152 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108382|gb|AAM37005.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 603

 Score =  290 bits (742), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 182/428 (42%), Gaps = 12/428 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L  +   +    ++      I++   +  N+    LG+   ++++   +
Sbjct: 180 GLLNTRQLQSDLDAL---AFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHAS 236

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T 
Sbjct: 237 YVLTRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTF 295

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  ++++++   +A+  A +        S            +  D   A+
Sbjct: 296 HAGVVRFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQAL 355

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  +  LV+ P I L D  + G EAL++W+H   G I   EF+ + E+  ++  +  +++
Sbjct: 356 DAGDFRLVFQPRIDLEDLSVTGFEALLRWNHASMGPIGPDEFIPLFEKTALMCTVTNWVI 415

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E     +  WR Q       + IN++S+D  +  L   +           + I+L  +E 
Sbjct: 416 ESALVQLAKWRAQGLD--FSMSINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEG 473

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K 
Sbjct: 474 RWLRSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKT 533

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +
Sbjct: 534 GMQMRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYV 593

Query: 954 KERFPLVK 961
           K+   L +
Sbjct: 594 KQTAALRR 601


>gi|307721757|ref|YP_003892897.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979850|gb|ADN09885.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 718

 Score =  290 bits (742), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 167/432 (38%), Gaps = 36/432 (8%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI-DIDKYKKINDVL 583
            LE     A+ D LTG+ NRQ   + +           N + ++MV+ +I  +  +N++ 
Sbjct: 304 MLEYFKRQAYTDALTGLGNRQLLKESI----------SNTKNSIMVLSNIKDFSLLNEIY 353

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISE--NNSLKIADFAIAMRKS 640
           G+  G+ +L  +     +  +  +  + R+S + + +    +   +          + K 
Sbjct: 354 GVNEGNQILKEVAEEFKKFAQEFNFNVYRISSDEYVLFKEEDYQRSKDDYCALVDELTKR 413

Query: 641 IAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FR 696
           +    I +   E ++   I             +    A +A+  A+ +   ++       
Sbjct: 414 VNGLNITINGFEESINIEIYSGIVLHGGNPLED----AHMALRKARMKFLPYIVYSEAHD 469

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG---NIS 753
                 + + +K  +  A+E   +   + PI    D ++V  EAL++    + G    +S
Sbjct: 470 SKKRSEEILNMKHKIHYALEYKNVVPFFQPITN-KDGKVVKYEALVRILDFEKGEVKILS 528

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+ IA +  +   I   +L +  +               I +N    D  +  + E 
Sbjct: 529 PFFFLDIAIKGGLYFDIAKEVLRQSLK-------LFKDKKEKISVNFLPNDFYNESMIEI 581

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              LI        +I +  +E   M +  +   ++   RK+G+ + +DDFG+  +   ++
Sbjct: 582 FLELIKDYE-KKDQIVVEVTEQEGMEDFNKFAQVIQEFRKVGVLIAIDDFGSGYANYQHI 640

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +GSL+      +    +++SII  A  +  T++A+ +  +     L   G
Sbjct: 641 LMLKPDYIKIDGSLVENVVRDKDSQILIKSIIDFASELNITVVAEYVENKEIFDLLKEYG 700

Query: 932 CDYIQDSHVASP 943
            D  Q  +   P
Sbjct: 701 VDEFQGYYFGKP 712


>gi|293402050|ref|ZP_06646189.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304442|gb|EFE45692.1| putative diguanylate cyclase (GGDEF) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 981

 Score =  290 bits (742), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 109/673 (16%), Positives = 242/673 (35%), Gaps = 55/673 (8%)

Query: 296 LFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLW 355
           L C        + S  + TL  ++   +   I++  K   + +L      LI    + L+
Sbjct: 317 LACAHQLKLYSSFSPFQDTLWYLIGVGSEDEIFYSTKQIHQLLLYACITALIIATLVALY 376

Query: 356 MAITKRLDNDIIQPALVGGLVLIVIL-IGFTVIQHVLATGYFSQGIFSDGE----RQSLA 410
            ++        +   L    V    + +  T I+ +       + +         R S  
Sbjct: 377 GSMLFTKPIRALATRLRQTPVTTNKIELPKTHIKEIDELSASIEDLSYHLHGAETRLSYV 436

Query: 411 VLGSGDIVWDWDI-VRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTIL 468
           +      +   +I    +V  T  + T+LG      M    + ++  I          + 
Sbjct: 437 LHTIDIPIGAIEIYNERKVFCTEKVGTLLGFRDPSKMEYTFKAFMEEI---------QLF 487

Query: 469 DSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG----IANDITEQKK 524
           +  +     ++  E R   +D     +             I R  G    + +D+T + +
Sbjct: 488 NKKIISSEKQINTEHR--TSDIYLIHVTNSAEQTCWLRFLINRVEGNRVIVVSDVTLEIQ 545

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E ++     D LT + NR++F      IL  +         +++ D+D  K +ND  G
Sbjct: 546 EKEHLMYERDHDVLTQLLNRRAFRVHCEAILKQADL---KTCAMVLWDLDNLKLVNDTYG 602

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM- 643
              GD ++ +L   + +      I AR++G+ F +      N   I      + + +   
Sbjct: 603 HDAGDHLICALADVLQKERGPNCIAARMAGDEFLLFYHHFENEEAILKHIRHIHEVVNET 662

Query: 644 PINLLEREI-TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            ++    +I  V  S G +      +    ++K+A+ AMY  K+    ++ +F    +  
Sbjct: 663 EMHFGNDDITRVKVSAGISWMPKDAMDFDTLIKHADFAMYEVKNTQKGNIRTFSEEHYLH 722

Query: 703 DRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           + ++   +++L   +E   +   + PI+      ++G EAL++ +       + S+ M +
Sbjct: 723 NNLIFDGRQELMNILEEQRVSYAFQPIVDAKTGAVLGFEALMRPNSD--ILKTPSDVMQV 780

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A+    +  +      +        +  A      + IN     +    + + ++  + +
Sbjct: 781 AKTQKQLHRVEYMTWTQSLSHFS--QQVAIDKQWKLFIN----SIPSIPMLDEIKQYLEE 834

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRL--------RKIGISLTLDDFGTKCSLLSY 872
                  +      S ++     S  +            R+      LDDFG+  S    
Sbjct: 835 H--YHEYL------SKIVIELLESEEIEHSYMLSKQDFCRRWHAQTALDDFGSGYSSDHR 886

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L     D VK +   +T     + R  +++S++  A + +  +IA+ +    D+  L + 
Sbjct: 887 LFNAQADYVKIDMEFITNIARDKGRQMLVKSVVSFAHSHDIKVIAEGVETHEDLVYLIQH 946

Query: 931 GCDYIQDSHVASP 943
             DY+Q  ++A P
Sbjct: 947 DIDYLQGYYIAKP 959


>gi|253577856|ref|ZP_04855128.1| diguanylate cyclase/phosphodiesterase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251850174|gb|EES78132.1| diguanylate cyclase/phosphodiesterase [Ruminococcus sp. 5_1_39BFAA]
          Length = 650

 Score =  290 bits (742), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 162/404 (40%), Gaps = 14/404 (3%)

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
            +       ++ DI K+  IND  G   G  +L  + RR+ EL      + R   + F  
Sbjct: 251 ANGEKEYAFIMTDISKFHLINDYWGYETGTKILNFVLRRM-ELFSASLFVNRYHSDVFVA 309

Query: 620 ILI-----SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           +L      S +   +I ++   + + I     +         + G      + I + +++
Sbjct: 310 VLDITGRKSSDVKKQIEEYNRQIIQEILKTFQIN----YFHLNTGIYYLKDTSIPAEQII 365

Query: 675 KNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
            +  +    AK    G    +  ++               A++  E  + + P I   D+
Sbjct: 366 SHTNIVREKAKTELSGVCEYNNDIALNEQHCADTIHSFKSALKQKEFKIYFQPKICGKDQ 425

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
            I   EAL++W            F+ I EE   I+A++ ++ E     +   + +     
Sbjct: 426 TIASAEALVRWQRGNDTMWYPDMFLSILEETGEIRALDYYVYEETFAWMNQRQKEGKRV- 484

Query: 794 IFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
           I + +N++     + +   E + AL+ +   +P  +    +E+  + N +    ++    
Sbjct: 485 IPVSLNVSPVHFGNIHSFAEKVMALVKQYEINPYYVIFEITETTFIHNIKSVNEMIRFFH 544

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIET 911
           +  I +++DDFG+  S L+ L  I FD VK +   ++   +E    +L+ I  + K    
Sbjct: 545 EQNIRISMDDFGSGYSSLNALKDILFDEVKIDKRFLSDELSENGKIVLQEIFHLLKRTNK 604

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +I+ + +  +  +  L   GCD +Q  +   P+  N+  KLL+ 
Sbjct: 605 SIVCEGVETKEMVDFLVEEGCDELQGYYYYKPMSQNAFEKLLEN 648



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 5/152 (3%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ N+++   +L  I      DD L   +M+ D++  K IND  G   GD  + +    +
Sbjct: 72  GVHNKKALEKQLQQI---QDEDDTLDTGIMMFDLNNLKIINDTYGHEEGDVFIQTFASFL 128

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +L     LAR  G+ F +I+       ++    I ++  I       +  ++      
Sbjct: 129 TRILTENSYLARFGGDEF-LIIQRNTTWSQLEQMNIQLQTLIDEHNQTADHPLSYAVG-Y 186

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
             S  +      ++LK A+  MY  K      
Sbjct: 187 DISCKNHYYLIMDLLKIADEKMYQDKKYKKQQ 218


>gi|156301879|ref|XP_001617418.1| hypothetical protein NEMVEDRAFT_v1g226100 [Nematostella vectensis]
 gi|156193662|gb|EDO25318.1| predicted protein [Nematostella vectensis]
          Length = 304

 Score =  290 bits (742), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 127/289 (43%), Gaps = 5/289 (1%)

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHP 726
           ++S  L++A L +  AK  G +    +      +      +   L  AV+  ++ +   P
Sbjct: 9   SASVALQDALLTLKQAKRLGHDQHGVYDPRLQGAHAESYRMLLALRDAVDAGQISVELQP 68

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            I +    ++G+EAL +W       +    F+ +AE    I  +   ++    +      
Sbjct: 69  QIDMQTRRVIGVEALARWRKADGKMVPPLSFIPLAEATGYILPLGDLLMRLALQAAKQLA 128

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
           D      I + +N+++  LL ++  E   + +  +  +P +I++  +ESV M N +    
Sbjct: 129 DA-GYSQIRVAVNVSAPQLLQHDFIERFNSHLQASGVAPEQIEVEITESVAMRNFDSVCE 187

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIP 904
            L  LR +G+ + +DDFGT  S LSYL  +P D +K + S +    E   +  I  ++I 
Sbjct: 188 KLRALRAMGVEVAIDDFGTGFSSLSYLRLLPADRLKIDRSFVLEIGEVSDQQMIAEAVIQ 247

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +A  +   +IA+ +  +     +   GC   Q    A P+    +L+ L
Sbjct: 248 IAARVGMQVIAEGVETQQQADWILAHGCRQAQGYLFARPMACAELLQWL 296


>gi|209524354|ref|ZP_03272903.1| diguanylate phosphodiesterase [Arthrospira maxima CS-328]
 gi|209495145|gb|EDZ95451.1| diguanylate phosphodiesterase [Arthrospira maxima CS-328]
          Length = 297

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRL 730
           ML+ AELA++  +         F           ++    +     + +  L Y PI   
Sbjct: 1   MLQAAELAVHQCRRSPNTSYTIFNHEFKAYASRQLELDNQMRRDFNDRKFQLYYQPIFGA 60

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              +IVG E+LI+W +     IS+ EF+ +AEE   I  +  +   +       WR Q  
Sbjct: 61  ETLKIVGFESLIRWYNNT-QLISNFEFIPLAEETGFIIPLGTWGFGQACWQFQQWRSQFP 119

Query: 791 MP-PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
               +FI IN++   L+   L   +  ++  T   P +I+L  +E+ +M N E    +L 
Sbjct: 120 QVASMFININVSVIQLMQPNLLSQIDHILKVTEIPPQQIQLEITETALMNNAEDITDILK 179

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAK 907
           +++   I+L +DDFGT  S LSYL   PFDT+K + S ++G    +K + I+R+I  MA 
Sbjct: 180 QIKSRKINLCIDDFGTGYSSLSYLHNFPFDTIKVDKSFISGMERDQKSVEIVRTIALMAN 239

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            ++  ++A+ +  +  +++L  +    IQ   +A P+   ++   L+ +
Sbjct: 240 CLDINLVAEGVETQGQLRQLQNLKYQTIQGYLLAQPMSVAALEDYLQRQ 288


>gi|51244369|ref|YP_064253.1| hypothetical protein DP0517 [Desulfotalea psychrophila LSv54]
 gi|50875406|emb|CAG35246.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 651

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 178/434 (41%), Gaps = 19/434 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + Q K  E    NA+ D LTG+ NR+    ++   L+  +  +++   ++++ +D  +K+
Sbjct: 224 SGQVKIAERFRRNAYSDQLTGLGNRRYITGQVEARLE--SGGESMHGALLMLQLDNLQKV 281

Query: 580 NDVLGIAVGDDVLVSLTRRIGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
           N++ G A GD++L  +   I +   +     LARL+G  F I +   ++   + D A  +
Sbjct: 282 NELDGFAAGDELLKKVADIIKQETKMLNDVALARLTGGDFAIFISEISSV-AVYDLAEKI 340

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
            + +              A IG   +  +      +L  A+ A+  A+ +G N      +
Sbjct: 341 SQKVTRLAVENASHSDNIAHIGGVVYEETPTLPK-LLAEADNALQAARQQGPNKWLVNFL 399

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNI 752
           SS   D +      KE L   +E  E+ L   P++   D   +   E L +        +
Sbjct: 400 SSGADDLIKGKSWWKETLENVLERGEIILFRQPVMNSTDQNRVQHQELLSRIAMDSGEIV 459

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S+  F+ +AE L ++  ++  +LE++        D        I +N++   L D+   +
Sbjct: 460 SAGVFVPLAERLQLVSRLDKVVLEKVFAQKEKMADLH-----TIAVNVSPSSLDDSAFVD 514

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            + A + +       I   F E   +   +  +    +++K+G  + LD FG   S   Y
Sbjct: 515 WVLAELGQLQDKSIHIIFEFPEFGAVQYLDVVKDFARKIQKLGHGIGLDHFGQSFSNFGY 574

Query: 873 LGYIPFDTVKFNGSLMTGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L  +  + VK + +               + ++  +A +++  +IA+ +     +  L  
Sbjct: 575 LKSLRPEYVKIDRAFTKELDADNGDSEFFIGALCGVAHSLDIRVIAEGVERAEQVDLLVE 634

Query: 930 MGCDYIQDSHVASP 943
           +  D +Q      P
Sbjct: 635 LNVDALQGYLFGEP 648


>gi|289665974|ref|ZP_06487555.1| hypothetical protein XcampvN_23600 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 625

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 180/425 (42%), Gaps = 6/425 (1%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ N +     L  +   S     +   + V D     +    LG+   ++++   +  +
Sbjct: 202 GLLNARQLQSDLDALAFGSHCMPAIAAFIEVYDTQAANEARQALGMQPLEELIRHASYVL 261

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T   G
Sbjct: 262 TRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLHTPVDAAGVPMSLTFHAG 320

Query: 660 FASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
              +   ++ ++++++   +A+  A K+       S            +  D   A++  
Sbjct: 321 VVRFAPQQLDTNDVMRKGLVALGDAIKNHAIVCWYSASHDDAIQRSYRLALDAEQALKAG 380

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +  LV+ P I L D  + G EAL++W H   G I   EF+ + E+  ++  +  +++E  
Sbjct: 381 DFRLVFQPRIDLADLSVTGFEALLRWHHSSLGPIGPDEFIPLFEKTALMCTVTNWVIESA 440

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  WR Q       I IN++S+D  +  L   +           + I+L  +E   +
Sbjct: 441 LVQLAQWRAQGLD--FSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEGRWV 498

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--I 896
            +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K    
Sbjct: 499 RSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIANKAGMQ 558

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +K+ 
Sbjct: 559 MRAEAVVRLANALGYRTVAEGIEHADEIAMLRSWGCDEAQGYLLAKPMEAHLVADYVKQT 618

Query: 957 FPLVK 961
             L +
Sbjct: 619 AALRR 623


>gi|120556510|ref|YP_960861.1| diguanylate phosphodiesterase [Marinobacter aquaeolei VT8]
 gi|120326359|gb|ABM20674.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 867

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/449 (22%), Positives = 189/449 (42%), Gaps = 26/449 (5%)

Query: 517 NDITEQKKSLEGILCNAFQDNL------TGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           +DI  Q++           D L      TG PNR    + L  +            T+ +
Sbjct: 423 SDIRVQEEQKLRASIERDYDRLLKTHRVTGKPNRPMLEETLGAL-----DCHKTPYTLCM 477

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----------PDILARLSGNRFGII 620
           I + ++ ++   LG    +++L    R++   LK              +A L        
Sbjct: 478 IRLARFNELEQALGYRAAEELLKQYLRQLNRYLKQTVGDQLVMINGYSVATLDTVNHAFA 537

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L+   +    +    A+ + ++          +  AS+G A         + +L  A  A
Sbjct: 538 LLRHPDEALESQRLQAISRWLSENFREGRFSFSWAASVGVAHAPEHAAEPAGVLACAGFA 597

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
                      V    ++ ++  + M+  D+  A+ + E++L Y P I + D  I  LEA
Sbjct: 598 --SLDESLPLVVYDPAIAEWQYRQQMLMLDVEQALRSGEMWLEYQPKINIRDGRIGSLEA 655

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP++G I+ S+++ +AEE+ +I  + L++L+R  RD    R+Q     I + +NI
Sbjct: 656 LIRWQHPEFGRIAPSQWIPLAEEVGIIHTVTLWVLDRACRDSHQLREQYGR-DITVAVNI 714

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++KDL  +   E   A++ +    P+ + L  +E+ +M +PE +R  +  L  +G  + L
Sbjct: 715 SAKDLAHSLFHEEAGAIVRRHKLEPANVSLEITETAMMTDPETARSTIRTLSAMGFRIAL 774

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S L  L     D +K + S + G      R  ILR+ + +   ++  ++ + +
Sbjct: 775 DDFGSGHSSLGALAQFELDELKIDRSFLEGVLDYPSRQKILRAALELGTALDLDVVVEGV 834

Query: 919 YGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             E     L +      Q  +   P    
Sbjct: 835 EDETIALWLHQFPGLQGQGYYWGRPFSLE 863



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 116/423 (27%), Gaps = 21/423 (4%)

Query: 3   LSNSLRSHFEKAFLILVL---FLLWMVSPSFAI---EPINISSSDRVLDLTSITRIYVNQ 56
           L   L   F    L+L +              +     +   S+     +       ++ 
Sbjct: 19  LPAWLHQSFPFVILLLAITYGLATTFWQDPPTLSVSPSVQTDSATNGPRIAGQIEYLIHP 78

Query: 57  GEDFQVFTAADIDGISRRIEVSASSIRH--RGDWAVFALANTSDSQLERLIVVPHYRLVG 114
                +        +  R +   S I +  +       L N +       + VP   L  
Sbjct: 79  LGKV-LQDRLWQSEVWSRTDTRYSGIGYPYKPATFRLTLENPTSEPANSQVTVPAPYLDH 137

Query: 115 SH--FFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS--TPNL 170
                  PD GS   +           R       V+ +T+ PG   T +ME+    P L
Sbjct: 138 LQPALIHPD-GSIEHLPAMGDRYPFDQRFLALPQWVWPVTLQPGTT-TLLMEVQNHGPVL 195

Query: 171 PQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLG 230
             + L +         + T ++  + G+     +         R   L     +   V+ 
Sbjct: 196 LPVILSDSAEALGAGTAITAWKSFVTGLLVFALLLNLSIVAKLRRPGLAWLSVLMISVIY 255

Query: 231 YISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGI 290
              +  G    L+     EL    + S      +L  F   +L   R  A++        
Sbjct: 256 SQLVMDGLGLWLIWPALPELNALLSISLPLCQIALCEFTPHFLQLTRTEARILRAFSLLA 315

Query: 291 ACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW 350
               +   + F +    A +    +  + ++         +  +  A     + + I I 
Sbjct: 316 GAHLLAAPLGFQFLGQHAFLMSSAVGGLFIFALSL---RQLNSHVYARYYALSVLAIVIG 372

Query: 351 FIGLWMAITKRLDNDIIQ---PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +   +     L  + +      L      +++  G   +         S  I    E++
Sbjct: 373 AVTSSLRTVGWLPVNAVTDSAFFLGAATGSLILTSGVGKLLLEERKKRLSSDIRVQEEQK 432

Query: 408 SLA 410
             A
Sbjct: 433 LRA 435


>gi|170722645|ref|YP_001750333.1| diguanylate phosphodiesterase [Pseudomonas putida W619]
 gi|169760648|gb|ACA73964.1| diguanylate phosphodiesterase with GAF sensor(s) [Pseudomonas
           putida W619]
          Length = 592

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/455 (22%), Positives = 195/455 (42%), Gaps = 24/455 (5%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +      +    D+  Q  +        F D  TG+ NR      + T L+      +  
Sbjct: 143 DDAQRGMLQAFADMAVQIIAGIRHRN--FYDQPTGLFNRVKLECDVQTRLER-----HDA 195

Query: 566 PTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            TV+V DI        +  VLG     D+ + +   I   L     L ++S  RF +I+ 
Sbjct: 196 LTVVVFDIMPAQVLTHMIKVLGYNFAHDLTLQVKDLIVSQLDPDLALYKISPTRFAVIVH 255

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAM 681
                         +  +++ P+   +  + + A++G +  T      S + L+ A  A 
Sbjct: 256 -----QHPLAMCARVIGALSDPVQCHQIPVLLDAAVGISPVTRCDDDGSLDWLRRAVGAA 310

Query: 682 YHAKHR-GGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLE 739
             A+            V + +     +   L  A   + EL L   P + L        E
Sbjct: 311 DAARGNPSRCAHYQPEVDAAQRRAFSLLSSLGAALQSDDELSLHLQPRVELQGHTCNSAE 370

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W HP+ G+IS +EF+ +AE+  +I +I+L+++  +   +   +     P + I +N
Sbjct: 371 ALLRWRHPQLGDISPAEFIALAEKTALIASISLWVMRAVLNILQHAQA----PDLRISMN 426

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           + ++DL +    + + A +     +P R++L F+ESV++  PE  R  L R R+ GI + 
Sbjct: 427 VTARDLENAVFMDTLLAELQHRAIAPWRLQLEFTESVLIEQPEEVRRQLLRARQAGIDIA 486

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S  +YL  IP   VK + SL+     + K + +++S++ +A  +   ++A+ 
Sbjct: 487 IDDFGTGYSNWAYLSRIPATLVKLDRSLIQKATHSAKDLLLVQSLVGLANQLGYQVVAEG 546

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           I     +      GC   Q  ++A P+   +    
Sbjct: 547 IETAEQLTCAKAWGCTQAQGYYLARPMPLAAFQTW 581


>gi|240138327|ref|YP_002962799.1| hypothetical protein MexAM1_META1p1674 [Methylobacterium extorquens
           AM1]
 gi|240008296|gb|ACS39522.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 327

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 7/257 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +D   A+   E  L Y PI+      I G EAL++W HP  G +S ++F+ +AEE   I
Sbjct: 61  AKDFRAALAGGEFSLAYQPIVSAATGAITGCEALLRWQHPFLGPVSPADFVPLAEETGAI 120

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + I  ++LE   R    W D        + +N++   L D    + + A +  +  +  R
Sbjct: 121 RPIGAWVLEAACRQAAVWPDF-----CRVSVNVSPVQLQDPGFADRVVAALRASGLAAGR 175

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E V+MG+   +   +  LR +G+S+ LDDFGT  S L YL    FD +K + + 
Sbjct: 176 LELELTEGVLMGDVAVALEGVAALRALGVSIALDDFGTGFSSLGYLQRFAFDRLKIDRTF 235

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G  E R +  ++R++  +A++    + A+ I  E + + L  +G   +Q    + P+ 
Sbjct: 236 IRGLGEARESWFLVRTMHDIARHFGMAVTAEGIETEDEARMLREIGATELQGFLFSRPVA 295

Query: 946 FNSILKLLKERFPLVKN 962
                 LL E+   +++
Sbjct: 296 GAVATALLSEQAHRLRS 312


>gi|229529262|ref|ZP_04418652.1| hypothetical protein VCG_002355 [Vibrio cholerae 12129(1)]
 gi|229333036|gb|EEN98522.1| hypothetical protein VCG_002355 [Vibrio cholerae 12129(1)]
          Length = 818

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 214/632 (33%), Gaps = 41/632 (6%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGG-LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
               + A             +    LV +V      V   ++        IF  G   + 
Sbjct: 67  CAAGFFAQAGSAPQSFNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAF 126

Query: 410 AVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNF 464
           A     D     V   D     +          G     + G   +      H     +F
Sbjct: 127 AFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HF 183

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQK 523
              +   +  + G        + A  +     + I+ +S   G I  YIG   D+     
Sbjct: 184 YVDMWQQLREQGG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLD 241

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L+    +     LT +P    F  +L   L    T                  I    
Sbjct: 242 RVLDKQAGDVE--LLTQLPTLSKFSAQLKQRLPKQQTTTGFVLA-----------IQPKF 288

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKS 640
                   +  L   + +       L    G   F   L +E N     +      +R+ 
Sbjct: 289 SSDKYYAQIRLLAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQF 346

Query: 641 IAMPINLLEREITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESF 695
                    +E         +G +           ++ +A  AM  +HA      +    
Sbjct: 347 FIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDR 406

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R  +++ +   + N ++ + Y PI+      +   EAL ++  P+  + S+ 
Sbjct: 407 AIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVAKFEALCRFQAPEILHASTQ 466

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGM 814
           E + IAEEL +I  ++  +  +  +D+           + + IN +   DL   ++ + +
Sbjct: 467 ELISIAEELGLINQLDELIGNKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSV 525

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++++T      I +  +E+    +  +   +L  LR +G+++ +DDFGT  S  SYL 
Sbjct: 526 VDMLAETPILAKNITVELTETAYFDSQSQGGEVLQHLRNLGVTVAIDDFGTGFSSFSYLT 585

Query: 875 YIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
              FD +K +   +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G 
Sbjct: 586 ECQFDYLKIDREFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGV 645

Query: 933 DYIQDSHVASPLGFNSILKL--LKERFPLVKN 962
           D +Q    A PL  ++++     ++   L   
Sbjct: 646 DLLQGFFFAKPLPLSNLIHASDYRKHLKLTNR 677


>gi|270264187|ref|ZP_06192454.1| hypothetical protein SOD_g01190 [Serratia odorifera 4Rx13]
 gi|270041836|gb|EFA14933.1| hypothetical protein SOD_g01190 [Serratia odorifera 4Rx13]
          Length = 555

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 203/484 (41%), Gaps = 32/484 (6%)

Query: 496 IIRIRPMSNSNGDILRY---------------IGIANDITEQK-KSLEGILCNAFQDNLT 539
                P+    G I+                 +G+ +++T    + +E        D +T
Sbjct: 74  HYVAMPIRTREGYIIGALCITDKQPRFFSAARVGLLSNMTTIVIELIEAQSEIGLVDAVT 133

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
             PNRQ  +  +  +   SA+ +     +  IDI    ++    G++  + VLV +   +
Sbjct: 134 RFPNRQRLMREIGNL--SSASGEYALILLDTIDIKYAYEMARSFGLSAVELVLVDIGHFL 191

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKI---ADFAIAMRKSIAMPINLLEREITVTA 656
            +      +L  +S  RF  I+ ++     I      A  +R  +   + L      +  
Sbjct: 192 KDTFLGEQLLYSISPGRFATIIDAQKIHPAIGMLETCAERIRHEVRGIVPLK-----LEL 246

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAV 715
             G+  ++       E+L+ A  A++ A          +    + R  +  +  +L  ++
Sbjct: 247 YAGYTLFSVQSSNPQEVLREATSALHDAIDESLTVSAYNVSKDAIRKYKFNLLNELAESL 306

Query: 716 ENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +    LYL Y P + L+ ++I+G EAL++W HP  G I + +F+ +AE   +IK +  F+
Sbjct: 307 KQRVGLYLEYQPKVELISKQIIGAEALLRWQHPVLGAIPTGDFIRLAENTSLIKPLTEFV 366

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           + +  R++   R       I + IN+ +++  + +    +   +      P  I++   E
Sbjct: 367 ISQATREVFRLRQAG--VNIPVSINVTAENFAEKDFSGRLDDALGHYNLQPQDIEIECLE 424

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           S  +     +   L  L+  G ++ LDDFG   S L+YL +IP + +K +GSL+      
Sbjct: 425 SQRILESGEALACLQTLKARGYTIALDDFGAGYSNLNYLRHIPANVIKLDGSLIKNLRTD 484

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +   +++SII M   +   ++A+ +  +  +  L + GCD  Q  + +  +    +  L
Sbjct: 485 NESRIVVQSIIDMLHKLNYVVLAEGVEDQESLHYLEQYGCDIAQGFYFSPSVSLEKLCVL 544

Query: 953 LKER 956
           L   
Sbjct: 545 LNTH 548


>gi|126661597|ref|ZP_01732629.1| sensory box/GGDEF family protein [Cyanothece sp. CCY0110]
 gi|126617118|gb|EAZ87955.1| sensory box/GGDEF family protein [Cyanothece sp. CCY0110]
          Length = 267

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 137/250 (54%), Gaps = 3/250 (1%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +K  L  A++N E  L Y P I L   ++ G+EAL++W+HP+ G IS  +F+ +AE+ 
Sbjct: 13  LKMKTALEQALDNEEFVLYYQPQINLETAKVSGVEALVRWNHPQLGLISPDKFITVAEKT 72

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +  ++L R  R+  +W++    P + I IN++   L D    + ++ ++ ++   
Sbjct: 73  DLINRLGRWVLNRACRENQAWQN-LGFPLMTISINLSPFQLQDPNFKDMVKQILEQSELP 131

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P+ ++L  +E  ++ +PE +   L  L+++G+ L+LDDFG+  S L+YL  +PF TVK  
Sbjct: 132 PTCLELEITEEAILAHPEMTHQTLVNLKQLGVYLSLDDFGSGYSCLNYLSRLPFGTVKIA 191

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +   T     I+++  I+ + K ++  ++A+ +  +  ++ L  + C  +Q  +   
Sbjct: 192 QSCIKNLTNDYHNISLVSVILAVGKTLDIRVVAEGVETQQQLETLKNLHCREMQGYYFTQ 251

Query: 943 PLGFNSILKL 952
           PL    I K 
Sbjct: 252 PLTSEEITKF 261


>gi|323492498|ref|ZP_08097646.1| hypothetical protein VIBR0546_15716 [Vibrio brasiliensis LMG 20546]
 gi|323313285|gb|EGA66401.1| hypothetical protein VIBR0546_15716 [Vibrio brasiliensis LMG 20546]
          Length = 820

 Score =  289 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/561 (16%), Positives = 217/561 (38%), Gaps = 34/561 (6%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIND 460
              E        +   +   D     +       T+ G     + G     +    H   
Sbjct: 126 DAAELFYSLFENAHHGIIVADSDTRILACNHYFETLTGYLRNELVGLRTEIFNAGEHSE- 184

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
            + +R +      +  G  +     R AD +     + I  M   +G +  Y+G ++D++
Sbjct: 185 -EYYREMWQQV--HEAGFWKGIILSRHADGKAFPHELTIHKMHAGSGQV-FYVGFSSDLS 240

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
            + + LE +      D LT +P++++FL+RL      + +       V+ I         
Sbjct: 241 TELERLEDLESGGV-DILTQLPSKETFLERLHQCCLDADSRHG--LVVLAIQ-------- 289

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDIL---ARLSGNRFGIILI-SENNSLKIADFAIA 636
                   D  +    R+    LK    +     L  + F + L+       ++A     
Sbjct: 290 ----PKFLDSSVQETKRQFASYLKDNTHVVASGYLGSDCFAVCLMVDIQMEQQVASDIGR 345

Query: 637 MRKSIAMPINLLEREITVTAS---IGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNH 691
               +       +  + +       G + W    I  ++++ +A  A+   H+      +
Sbjct: 346 AITKLFHSFKHAQTSVALALKDGVTGVSVWNVDAIKPNQLVSHAYQALLELHSGQTRRIN 405

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +      +  I+  +  ++E  ++ + + PI+ +    +   EAL ++   +   
Sbjct: 406 FYDREIHRQVERKKQIENHVLQSLEQGKIEVYFQPIVDISRRRVDKFEALCRFPGSEEFE 465

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA-SKDLLDNEL 810
            S+ EF+ + EEL  +  ++  +L      +   + Q     + + +N +    +  +++
Sbjct: 466 ASTQEFVEVVEELNKVVELDDLVLLAALEQLPELQAQFG-EHVSLSVNRSLRSTVELSDI 524

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            +    ++ K   +P+ + L F+ES    +   +R LL  LR  G+ + +DDFGT C+  
Sbjct: 525 LQRAAMILDKQNTNPALLTLEFTESAFFKSNSHNRQLLSLLRDAGVQIAVDDFGTGCASF 584

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            YL    FD +K +   +   + +     I+ ++I +AK ++  ++A+ +  + ++  + 
Sbjct: 585 KYLKENYFDILKIDREFIQHLSHQTRQYEIVVAVIQLAKRLDLKVVAEGVETKQELDVMY 644

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
            +G +Y+Q  + + PL  N +
Sbjct: 645 ELGVEYVQGYYFSKPLPLNEL 665


>gi|229916899|ref|YP_002885545.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
 gi|229468328|gb|ACQ70100.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Exiguobacterium sp. AT1b]
          Length = 898

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/576 (17%), Positives = 208/576 (36%), Gaps = 34/576 (5%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           I  +V   V      SQ +    ER S     +G  +   D   + +          G  
Sbjct: 346 IAASVHSTVHELENRSQDLVRYHERWSSLFSETGLAIALMDDSYNLIERNEMFRQFFG-- 403

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                  +           R  F   L+            +F +        ++ +++ P
Sbjct: 404 ----DRNLYEINQLFTETGRRLFEQALEGVTDQGT---SAQFIIHLKGEHLRYLNVKLTP 456

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +      +  Y+ I  D T++ +    +      D  T + N   F+ +           
Sbjct: 457 LKREE-KLTYYL-IVEDETDRVERERKVDRLVRFDLATNLYNEYGFIRKWEK-------- 506

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGI 619
             +    ++I I  Y  + D    A  D +++   R +   L      +  R   + F +
Sbjct: 507 QEIDGAFVLIRIHDYHHLVDWYDPAYADLLMIEFARAVESRLSKYAQHLFGRYRDDTFML 566

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
            +   +   +       + +     + +  +   V   IG      +       L  A  
Sbjct: 567 YVRGFSYEDE-----HELLELFPTEVTINHKRQNVHIQIGATETEGAYND---CLFKAMK 618

Query: 680 AMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           A+ HAK         +        ++   I++ L  A+   +L + Y P + L    +VG
Sbjct: 619 ALQHAKET-RTPSVWYDSEILAQMQLAALIEQALPDAIRRGDLTVAYQPQVELKTGRVVG 677

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E L +W HP  G I  +EF+ +AE    I  ++  +L++    +++W+       I + 
Sbjct: 678 AEVLARWTHPDIGVIPPNEFIRVAERSDQILWLSHNILDQTIAQLVAWQ-GTAFEDISLS 736

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            N+++  + D  +   ++  I    + P R+K+  +ES  + +       L  +  +G  
Sbjct: 737 FNLSAHSV-DPSIVTKLRDSIEVYPWLPDRLKIELTESSDIMSYASELERLEDIADLGYC 795

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917
           L++DDFGT  +    + ++P   VK +   ++G  ++  + LR++   A   + T +A+ 
Sbjct: 796 LSIDDFGTGYASFEAIWHLPIQEVKIDRMYVSGKAKESTSFLRAVSRFANEQQLTALAEG 855

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           I  E D+  + R G +  Q  + +  L   S    +
Sbjct: 856 IETESDLSRMLREGVELGQGFYFSPALDAASFESWV 891


>gi|332756903|gb|EGJ87248.1| hypothetical protein SF274771_2529 [Shigella flexneri 2747-71]
          Length = 597

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 204/562 (36%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P +  + G       G    
Sbjct: 34  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPAVEKMSGWTQEEALGVPLL 93

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 94  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRNGGSYDVHYSITPLSTLDGSNIG 152

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 153 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 211

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 212 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 271

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 272 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 331

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 332 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 391

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 392 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 448

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 449 ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 504

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 505 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 564

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 565 TLSGIGVDLIYGDVIADAQPLD 586


>gi|330466192|ref|YP_004403935.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
 gi|328809163|gb|AEB43335.1| diguanylate cyclase/phosphodiesterase [Verrucosispora maris
           AB-18-032]
          Length = 792

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 125/250 (50%), Gaps = 4/250 (1%)

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A +  E+ L Y P + +   E+VG+EAL++W HP+ G +   E + +AE+  +++ + 
Sbjct: 528 ESAPDAGEIMLYYQPQVEIATGEVVGVEALLRWRHPRRGMVDPEELIRVAEQSAVMRLLT 587

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +++ +   +  W        +   +N++ +DL   E+ E +   +++   +P R++L 
Sbjct: 588 RRVVDDVVEQLAKWSAAG--VSLRAALNVSVRDLHTGEIAEQIADRLTRYGVAPERLQLE 645

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  +M +P R    + +L +IG+ + LDDFGT  S L +L  +P   VK + S + G 
Sbjct: 646 ITEGALMADPRRVLATITQLHRIGVGIALDDFGTGYSSLQHLRRLPLSEVKVDRSFVLGM 705

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI+RS I +AK +   ++A+ +  E   + L   GCD  Q    A P+    +
Sbjct: 706 VDDSDDAAIVRSTIELAKALGLRVVAEGVEDERTWRMLHAAGCDAAQGWFYARPMPAEEL 765

Query: 950 LKLLKERFPL 959
           +  L    P+
Sbjct: 766 VAWLARYRPV 775



 Score =  166 bits (421), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 18/232 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL-----SATDDNLRPTVMVIDIDKYKK 578
           +        A  D LTG+PNR++ L  +   +       +  + +    +++ID+D++K 
Sbjct: 235 RLTVEQRQLAALDPLTGLPNRKALLAEVNEQVHRHAERAARGEPDAHLALLLIDLDRFKN 294

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG AVGD +LV ++ R+  +++ PD++ARL G+ F I++       +   FA  + 
Sbjct: 295 VNDALGHAVGDRLLVEVSARLTGVVEPPDLVARLGGDEFAIVMTGLTEVGQARAFADQVV 354

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
           + +A P+ L    + V  SIG A +       + ++++A++AMY AKHR     V +   
Sbjct: 355 RVLAEPVPLDGLPLDVGGSIGIALYPDHGEDFATLMRHADVAMYDAKHRNDTVAVYTAES 414

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
               ++R+ +  DL   +E                 +    EA         
Sbjct: 415 DHNSAERLGLLADLRRVLEGG------------PTGQPHAAEATPPVRGGDG 454


>gi|313649889|gb|EFS14309.1| uncharacterized yegE domain protein [Shigella flexneri 2a str.
           2457T]
 gi|332766417|gb|EGJ96626.1| sensory box protein [Shigella flexneri 2930-71]
 gi|333002383|gb|EGK21945.1| hypothetical protein SFK218_3019 [Shigella flexneri K-218]
          Length = 597

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 34  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPAAEKMSGWTQEEALGVPLL 93

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 94  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRNGGSYDVHYSITPLSTLDGSNIG 152

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 153 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 211

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 212 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 271

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 272 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 331

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 332 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 391

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 392 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 448

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 449 ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 504

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 505 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 564

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 565 TLSGIGVDLIYGDVIADAQPLD 586


>gi|187926356|ref|YP_001892701.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|241665843|ref|YP_002984202.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D]
 gi|187728110|gb|ACD29274.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12J]
 gi|240867870|gb|ACS65530.1| diguanylate cyclase/phosphodiesterase [Ralstonia pickettii 12D]
          Length = 471

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 178/455 (39%), Gaps = 36/455 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D ++G+P+R  F+  L  +   +  D      +++I  D + +  + LG     +V+   
Sbjct: 13  DPISGLPDRGRFVQLLAAMPQPARQD--AIGALLLIGFDHFAEATNTLGPLAAREVIAEC 70

Query: 596 TRRIGELLKFPD-----ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
             R+  L          I+ R+    F +      ++  + D A  +  ++  P      
Sbjct: 71  ASRLEALSVPAADGNAPIVGRIGPETFAVACADFVSAQDVHDLARRISAALTRPFITHGY 130

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV------------- 697
           E+  + SIG   +      ++ +++ A+ A+Y  +H        +               
Sbjct: 131 ELVCSCSIGMTLFEGMPSDAARLIEQADRALYGVQHGAEPSPALYAPAAMPPGTGTNVAR 190

Query: 698 ---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  ++   +   L  A+   +  L   P + L D  IVG E L++W  P+ G ++ 
Sbjct: 191 ADGYDAIAEHPRLAAQLRHALARRQFSLNLQPQLSLTDGRIVGYEFLLRWSSPELGGVAP 250

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQ---------ANMPPIFILINIASKDL 805
           +EF+ I E+   I+ +  ++L+  A+ +     +          + P +   +N++   L
Sbjct: 251 AEFLPILEQTGDIREVGHWVLDSAAQMLAGLLREESERAGRNSRHQPGVHAAVNLSVAQL 310

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           LD +L + ++ + ++     +R+    SE  +      ++  +  L   G  + ++DFG 
Sbjct: 311 LDPQLSDVVRDIAARHAVPTTRLVFEISEHTLHRANGSAQKAVEALHACGARVAVEDFGA 370

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
               L  L     D VK + +++   +     A+L+ ++  A      +IA  +     +
Sbjct: 371 TAHSLDCLATFRPDQVKLDQAIVNAVTNASDHAVLQRLVTAAHGAGVPVIATRVETAAQL 430

Query: 925 KELTRMGCDYIQDSHVASPLGF---NSILKLLKER 956
             L    CD IQ   ++ P      +    ++ ER
Sbjct: 431 HALRACRCDVIQGYLLSQPFPARWIDDTQDVIAER 465


>gi|168333675|ref|ZP_02691930.1| putative signaling protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 898

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 160/427 (37%), Gaps = 39/427 (9%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +    + D LT + NR S+ D +  I       D     V+ IDI     IN   G   
Sbjct: 502 ELNHLNYYDPLTHVKNRNSYRDTMQDI----NKFDITSLGVVYIDIKGLSSINYARGTTF 557

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD++LV +   +  +    + + R+ G+ F +I+ + +    + +  + +          
Sbjct: 558 GDEILVRVANLLETIF--GNNVYRVGGDEFVVIVQNVS--EDVFENKVQLLDGK------ 607

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
              E     SIG                      Y        H E     S     +++
Sbjct: 608 GREEKDYKLSIG----------------------YTWNRHIETHDEQINSLSHNKYSLIL 645

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            + L   +   +  +   P I +  +++   EALI+  +          F+   E+  +I
Sbjct: 646 TKGLESEIAEGKFVVFLQPQIDMQTDDVTSAEALIRRKYADGRIQPPIMFIPFYEKEGII 705

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+LF+L+ + + I  W++        + +N +   + ++++ +    +  K   SPS 
Sbjct: 706 SRIDLFVLDTVCKAINEWKEIRPDKEYKVSVNCSRSTITEDDIVDRFAQVCQKNGVSPSL 765

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I +  +E++   N  R   ++    + G  ++LDDFG+  S LS      FD +K +  L
Sbjct: 766 IVIEITETINSTNNLRLSEIISNFIEAGFLVSLDDFGSGYSNLSTFVKSRFDELKIDMQL 825

Query: 888 MTGS--TEKRIAILRSIIPMAKNI-ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                  EK   +    + + + +   T +A+ I  +     L +M C   Q  +   P+
Sbjct: 826 TNNLHRDEKSKVLTEVALNLCERLDGLTSVAEGIETKEQYDILKQMNCVKGQGYYFDKPM 885

Query: 945 GFNSILK 951
             N    
Sbjct: 886 PINEFTD 892



 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 130/310 (41%), Gaps = 10/310 (3%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGS 444
            +++  A G        +    ++    S D ++  D+    +        T LG    S
Sbjct: 8   ALRNAFAVGDNFLNTLPEKMLINIIANLSDDSIFVLDVHTSLIQYYGNYFNTELGSNKRS 67

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           +          +H +D + +  ++ +    R    + + R    +  + +     +P+ +
Sbjct: 68  IPLGYEAKEGLVHEDDTELYLKLIRNMQKGRYE--ELDIRYLIPNGTYEYYTSSYQPIYD 125

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            NGD+   IG   +I ++K S +        D LTG  N+ S    + + L        L
Sbjct: 126 KNGDLNFVIGKTININKEKMSSDEFRL----DLLTGCFNKVSAEQMIASKLTEKKE---L 178

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  + ++DID +K IND  G   GDDVL  + + + +L +  D++AR+ G+ F I L + 
Sbjct: 179 KHALFILDIDNFKVINDSFGHLFGDDVLKEVAKDLKKLFRSNDVIARIGGDEFVIFLENV 238

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            N   +   +  +  ++    +  +    ++ASIG A +  +  T  ++LK+A  A+  A
Sbjct: 239 PNVDLLVARSTKIIDALNKHYSNGDNVYEISASIGVAQYPEAGTTYRQILKSANDALSLA 298

Query: 685 KHRGGNHVES 694
           K+ G      
Sbjct: 299 KNNGKKRFVF 308


>gi|152996100|ref|YP_001340935.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
 gi|150837024|gb|ABR71000.1| diguanylate cyclase/phosphodiesterase [Marinomonas sp. MWYL1]
          Length = 823

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/447 (20%), Positives = 184/447 (41%), Gaps = 22/447 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+        A  D  T +PNR  + D L T+L     +   +  +++IDI  Y+ ++  
Sbjct: 382 KQFERSRKLQALTDPSTELPNRTYYYDTLPTLLPNMEQN-TPQLALIMIDISNYQTLSQA 440

Query: 583 LGIAVGDDVLVSLTRRIGE--LLKFPDILA-----------RLSGNRFGIILISENNSLK 629
            G A  D  +    + I +  L+    ++            R++     +I        +
Sbjct: 441 FGPAKADSAICEAIKNIHKQILMMEGILIFPLPNKSIQKLIRITATNVVLI---STTPDQ 497

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH-AKHRG 688
           I      +++ + +P  + +        IG A + S      ++ +NA +A        G
Sbjct: 498 IKQQISKIQQILDIPTLVNKIHFRHQYKIGSALYPSQGSDLDKLYQNALIANNSVTYSSG 557

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
              V +  + S  + ++ +   L   +EN +LY    P + L D  I+G E L++W +  
Sbjct: 558 SWAVFTDNLKSNHAHQLGLITQLTEDIENEKLYFHIQPQVNLADRSIIGGEILVRWHNEH 617

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +S +EF+ +AE+  +I  +   +LE++ +         +     + INI++ DLL  
Sbjct: 618 LGQVSPAEFIPLAEQTGLIYKLTDMLLEKVFQWAFEHPAALSTQ--RLSINISALDLLQK 675

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +    +   +     S  +  +  +E+ +  N +     + +L   G  L +DDFG   S
Sbjct: 676 DFAIQVIEKLQNHHLSACKFTIEITETSIFQNNDIVHNNVRQLHHAGFKLAIDDFGVGYS 735

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            +  L  +  D +K +   +       +   + R++I + K +    +A+ I  E  ++ 
Sbjct: 736 SMQNLVALETDELKIDQFFVMNLLNDPQSQTLCRNMIDLCKALNIVSVAEGIESEEILQL 795

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLL 953
           L +  C   Q  H+  P+  +  LKLL
Sbjct: 796 LLQWQCQIGQGYHLYRPMSPSDYLKLL 822


>gi|315502323|ref|YP_004081210.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
 gi|315408942|gb|ADU07059.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. L5]
          Length = 845

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 123/250 (49%), Gaps = 4/250 (1%)

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A    E+ + Y P I +   E+VG+EAL++W HP+ G +   E + +AE+  +++ + 
Sbjct: 577 EQAGHPGEITMYYQPQIAIATGEVVGVEALLRWRHPRRGMVDPGELIQVAEQSAVMRLLT 636

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +++ +   +  W        +   +N++ +DL   E+ + +   +++    P R+++ 
Sbjct: 637 RRVVDDVVEQLAKWSAAGLT--LRAALNVSVRDLHTGEIADQIADRLARYGVPPERLQVE 694

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  +M +P R    + +L +IG+ + LDDFGT  S L +L  +P   VK + S + G 
Sbjct: 695 ITEGALMADPRRVLASITQLHRIGVGIALDDFGTGYSSLQHLRRLPLSEVKVDRSFVLGM 754

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI+RS+I +A  +   ++A+ +  E   + L   GCD  Q    A P+    +
Sbjct: 755 AEDPDDAAIVRSMIELAGALGLRVVAEGVEDERTWRMLHAAGCDVAQGWFHARPMPAEDL 814

Query: 950 LKLLKERFPL 959
           +  L    P+
Sbjct: 815 VAWLSRYRPV 824



 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-----DLSATDDNLRPTVMVIDIDKYKK 578
           +        A  D LTG+PNR++ L  +   +       +    +    ++++D+D++K 
Sbjct: 235 RLSAEREQLADVDPLTGLPNRKALLTEVAEQVHLHGDRAARGAPDAHLALLLLDLDRFKH 294

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG AVGD +LV ++ R+   +   D++ARL G+ F I++    +  +  + A  + 
Sbjct: 295 VNDALGHAVGDRLLVEVSARLTGAVGAGDMVARLGGDEFAIVVPRLTDIDQARERADRVV 354

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
            ++A P+ L    + V  +IG A +       + ++++A++AMY AKHR     V +   
Sbjct: 355 AALAEPVPLDGLPLDVGGAIGIALYPDHGEDFATLMRHADVAMYDAKHRNDTVAVYAPES 414

Query: 698 SSFRSDRVMIKEDLCLAVENS 718
               ++R+ +  DL   +E+ 
Sbjct: 415 DHNSAERLSLLADLRRVLESG 435


>gi|118581565|ref|YP_902815.1| PAS/PAC and GAF sensor-containing diguanylate
           cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
 gi|118504275|gb|ABL00758.1| diguanylate cyclase/phosphodiesterase [Pelobacter propionicus DSM
           2379]
          Length = 690

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/443 (23%), Positives = 185/443 (41%), Gaps = 27/443 (6%)

Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + ER  L       S +           + +    + + G     + G  R     +  
Sbjct: 219 QEQERNRLLARMFQESNEAQLITGADGRIMGSNDSFSQLTGYTGEEIVG--RTTRRLLAG 276

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                    L   +       Q E  +R  D           P+ +     + Y     D
Sbjct: 277 QKSKELFATLAEALR-SGNPWQGELHIRNKDGNVLSTWTTATPLRDERRKTINYTATLLD 335

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +  +    +     A  D LTG+ NR S + RL   L+ + +D++    V+ ID+D++K+
Sbjct: 336 VAARAGREQDNEYRANHDALTGLLNRFSLMQRLAQSLEQARSDEH-HFAVLFIDLDRFKE 394

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG  +GD +LV +  R+   ++  DI+ARL G+ F + +    +++  A  A  +R
Sbjct: 395 INDSLGHHMGDLLLVEVAARLVAAVRASDIVARLGGDEFVVAMPHIRSAIDPAFLADKIR 454

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           ++I+ P  L   E+  T SIG + +        E+LKNA+ AMYHAK RG N+ + F   
Sbjct: 455 RAISQPFLLEGHELLTTPSIGISVFPDDGGNVEELLKNADTAMYHAKSRGRNNYQFFMRE 514

Query: 699 SFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 +R++++ DL LAVE +E  L + P I L    ++G++A+++W HP  G I+   
Sbjct: 515 MHAITRERLLLEHDLRLAVERNEFILHFQPQIDLATGLVIGVKAMLRWRHPLRGIITPDR 574

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL---------INIASKD--- 804
           F+  A+   +I  I+   LE   R + +    A+     +          +N+ +     
Sbjct: 575 FISTADASGLILRIDHLSLEMACRQLAATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCD 634

Query: 805 ------LLDNELCEGMQALISKT 821
                        + +   I + 
Sbjct: 635 VGQGYLFSRPLAADRIVEFIRRH 657



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           L + I +A +I T + AK I  E  +  L    CD  Q    + PL  + I++ ++  
Sbjct: 600 LAATISLAHSIGTQVAAKGIEAEAQLNLLAAQRCDVGQGYLFSRPLAADRIVEFIRRH 657



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 48/181 (26%), Gaps = 16/181 (8%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSG------- 415
               IQ    G L  +   +         A     Q +     R   +   +        
Sbjct: 56  SRSYIQFRRQGELQALNKELQAATSDLREANRKLGQRVLELERRNRESAHQANGYLPGND 115

Query: 416 --DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
                   D         P  A +  L    +  P+      I   DRD F + + +   
Sbjct: 116 RSIGSIIIDPHLRIGVFNPGCARLFRLRPEDVGQPVDRLTRTIW--DRDEFLSDILAAFQ 173

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
                 +   R      +  W++  + P  +  G +   I   +DI+  K+  E     A
Sbjct: 174 NGLPITRETRR-----GRESWLLAHLAPAYDLKGRVEALIVYFSDISPFKQEQERNRLLA 228

Query: 534 F 534
            
Sbjct: 229 R 229


>gi|124515840|gb|EAY57349.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptospirillum rubarum]
          Length = 1144

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 124/626 (19%), Positives = 229/626 (36%), Gaps = 26/626 (4%)

Query: 349  IWFIGLWMAITKRLDN-DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
                   +    ++    I      G  +    +     I   ++  +      S    Q
Sbjct: 404  ATVSIPVLRGEGKIPWGTITITLPRGERISPEKIAILEKIATRISLAFERHEELSQIRLQ 463

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              A+      +   D   +           +      M G +  +L      D +  R I
Sbjct: 464  KSAMECIPVPMAITDPEGEIEWCNDAFQKRVSSDILRMVGNVPEFLVRGGERD-ELARQI 522

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++           E R  A +         I  + N NGDI   I    DI+E+K+  +
Sbjct: 523  WNTL--NGGSFFSGEIRHAAKNGDVSVTDTLITAIRNENGDIRHLILTETDISEKKRLED 580

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +   A+ D LTG+PNR      +   +  S         V   D+D +K +ND  G A 
Sbjct: 581  ILKRQAWSDGLTGLPNRTHLEILMDEAIHRSRLSGKG-VAVCFFDLDGFKPVNDRFGHAF 639

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +LV ++ R+   ++  D +ARL G+ F ++L   + +  I      + +SIA P   
Sbjct: 640  GDRILVEVSHRLQNSVRSGDTVARLGGDEFVLLLEEIDRNATIHQLLARILESIARPFEA 699

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD---- 703
                +++TASIG   +      S  +L++A+ A+Y AK  G N    FR  + R+     
Sbjct: 700  PGTPLSLTASIGVTIYPEDLSPSDVLLRHADHALYQAKEDGRNRFVLFRPETPRTMQPDA 759

Query: 704  -RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
              +     +    E   L L   P + L    I G+              +  + +    
Sbjct: 760  GHLPEVFPVRSGEEKRALLL--DPELDLSSGRISGIHIRQDARELDRPPDTPPDNLS--- 814

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
                 +     +L +  R +     +       + I + ++ L++      ++ ++    
Sbjct: 815  RWSRYRDEQFSLLRQGLRILSDLEKEGFDQ--TVTIPVDARLLIEPGFLSTLEHMVQTMG 872

Query: 823  -YSPSRIKLSFSESV-VMGNPERSRLLLGRLRKIGISLTLDD-FGTKCSLLSYLGYIPFD 879
              + SR++L+  ES   M  P     +  R R+ G SL LDD  G     +  +   P  
Sbjct: 873  LLNLSRLELAL-ESTKTMDKPGDPAGIFLRYREKGFSLCLDDCLGQSLHAMEQIRAWPLS 931

Query: 880  TVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
             V+ + SL    +E   A++   S++ +A+     +IA  +     ++ + R    + Q 
Sbjct: 932  RVRIHPSLTREISENDKALVIFDSLVHLAQAYGQNVIAAGVDDRDTLRLVLRSSARFFQG 991

Query: 938  SHVASPLGFNSI---LKLLKERFPLV 960
            S ++ PL    +   LK L  + P  
Sbjct: 992  SLLSPPLEPEQLRNSLKALSSQTPGT 1017



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 46/164 (28%), Gaps = 9/164 (5%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435
           L+  ++    +   L     +Q      +R     L + D ++  D V    +   P  A
Sbjct: 139 LLSWVLSIASLAASLRGEAQAQRGKVVDDRYRRLFLHAPDGLFLVDPVSLKVLEGNPIFA 198

Query: 436 TILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFH 493
            + G      + G     L     +D  +    L          +Q + R +   D  F 
Sbjct: 199 DMTGDFFRELLPGASLAALWNTTEDDLHHVVDRLRK----SGDPIQNQKRTLLRKDGTFL 254

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
                +  +          +    DIT + +        A  D 
Sbjct: 255 HTSANMTLVPGPEDK--HLLVQVRDITARVEMEGLNEIFATLDQ 296


>gi|88798355|ref|ZP_01113940.1| disrupted signaling protein (xGGDEF and EAL domains) [Reinekea sp.
           MED297]
 gi|88778795|gb|EAR09985.1| disrupted signaling protein (xGGDEF and EAL domains) [Reinekea sp.
           MED297]
          Length = 736

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/713 (14%), Positives = 259/713 (36%), Gaps = 42/713 (5%)

Query: 251 LIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASI 310
             +   + +  +     F    L   R   +   I+      +  L  ++         +
Sbjct: 42  WHFLFQAPLFHALMAFAFAGTVLVARRVLMRNVQISVVLFLLLMYLGALAIKLLASPVHL 101

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA 370
           + + +  +       +  H +      +          I+   + M  T+   N      
Sbjct: 102 SNLGVIFLYSIPLMAMALHSLALSRWLMYFNLIPFGAIIFGELIAMLDTRNYSNVNFLYL 161

Query: 371 LVGGLVLIVILIGFTVIQHVLA-------TGYFSQGIFSDGERQSLAVLGSGDI-VWDWD 422
            +   V    ++ F +   +L            ++   S      +    S    +    
Sbjct: 162 HLTVFVFFNFIVPFAMRGMILDAWRMPEVRQSMNKDRSSRKRLYRMLFEHSTQPYLIVRH 221

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
             +  +     +  +L   + ++       L                     R   ++ +
Sbjct: 222 AEQRVIDMNEALRRLL--PANALSQLQATILNAPVP-----ITRAQRLEFDGRTFIIRGQ 274

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             +  + N  + +            D+     +  D+ E     +      F D  +G+P
Sbjct: 275 A-IEQSQNHLYVVE-----------DVSHVQRLQRDVDE---MNDRFNRQMFLDPHSGLP 319

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NRQ+F+  +  +      + +    ++ +  +  + I + LG         +  R +   
Sbjct: 320 NRQAFVQAMERL-----KNTDAPIYLVCVKQEMSEYIAERLGPTEHARKQKTFARDLKAR 374

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
           L     + +LS + FG+++   + +                  +     +++ +   FA 
Sbjct: 375 LNAQ-HVGKLSQHHFGLLVTGLSEAELRQKLTDLYLHLSHAKYD-NVENVSLLSKFVFAP 432

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
                 + S +L   E ++   +               R +++ I+  L LAV+  EL  
Sbjct: 433 IDGQISSMSYLLDQTEKSLVLIQSGEFVVAFRPDTEESRIEQMNIRSQLELAVDRDELSF 492

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           V  P +     E++  EAL++W+H   G++S + F+ +AEE  ++  +  ++L+    + 
Sbjct: 493 VLQPKVNAQ-GELIEFEALMRWEHRD-GHVSPASFIPMAEEFGLVTQLTDWLLD-AVAEF 549

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
            S   +     + + +N++++DL   +L E +   +S+    P  + +  +E+ ++G+ +
Sbjct: 550 QSQPLRPGQSIVPVSVNVSARDLERGDLVERVLKALSRHGVQPDCLGIELTETALLGDWD 609

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILR 900
            +   L +LR  GI +++DDFG   S LS +  +P D +K + S M G T  R    ++R
Sbjct: 610 GAMEQLHQLRFWGIRVSVDDFGIGHSSLSRMVDLPVDCLKLDRSFMQGVTSDRRRLMLVR 669

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +++ + +++   ++A+ +  E ++  L+       Q  + + PL   +  +LL
Sbjct: 670 AMVDLCRSLNMQVVAEGVETEAEVTRLSEFDGLLFQGFYFSQPLSRIACRRLL 722


>gi|88798446|ref|ZP_01114031.1| predicted signal transduction protein containing sensor and EAL
           domains [Reinekea sp. MED297]
 gi|88778886|gb|EAR10076.1| predicted signal transduction protein containing sensor and EAL
           domains [Reinekea sp. MED297]
          Length = 837

 Score =  289 bits (740), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/463 (21%), Positives = 183/463 (39%), Gaps = 19/463 (4%)

Query: 507 GDILRYIGIANDITEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           G IL  I I+  + ++    E     NA  D+ TG+ N      +L  +   SA      
Sbjct: 377 GMILEMILISMALADRMSEAERFRLYNATHDSKTGLANDYYLATKLEQLAKESARG---- 432

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDIL----------ARLSGN 615
             ++ + +  Y++I   L       +LVS      + +     L            L  +
Sbjct: 433 LALVGVKLTNYEQIGSYLKEDQRVTLLVSSAEWFEQRIDEYSELLTLDPRNEVRTILYND 492

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
              + L++ NN  ++++    +    ++  ++L   ++    +G           + +  
Sbjct: 493 SLLLYLVALNNEDELSEVLHRLEGQRSVQNDVLPFRLSCVF-VGRFLDHWDGNYQAAINS 551

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
             +      +      + S         R+ + +DL  A+E   L L   P   +   + 
Sbjct: 552 IRQSVTTAIESDQRVVIYSEANQQAGLRRLQLAQDLEDALEQDGLMLYLQPQQYIDGRQQ 611

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              E L +W HP  G I   EF+ IAE+  +I ++  +++          R      P+ 
Sbjct: 612 ANCEVLARWSHPVLGMIPPDEFIGIAEQTGLIGSLTQWVIGESFAISEQLRRAIG-EPVQ 670

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + INI++ DL   E  E +         +P    L  +E+    N    +  L +L + G
Sbjct: 671 LSINISASDLSHPEFSEWVIREAVSRGINPGNFILEVTETAHNQNQAMFQRNLIKLNEAG 730

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTI 913
             L +DDFGT  S L+Y+   PF  +K + SL++    + ++  I+R+ I MA  +   +
Sbjct: 731 FMLAIDDFGTGYSSLTYVSDFPFSELKIDRSLISEMASSARQQKIIRATIDMAHGLGLVV 790

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            A+ I  E  +K L  M C+ IQ  + A P+     L  ++ R
Sbjct: 791 TAEGIEDEATLKALATMHCEKIQGYYYARPMPVADYLAWVQTR 833



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 115/367 (31%), Gaps = 23/367 (6%)

Query: 51  RIYVNQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHY 110
              ++      +   ++      ++  + SS      W    L+N    +++  ++  + 
Sbjct: 50  EYLLDSDAT-TLEQISESVFTEGQMNKTPSSFGVHNHWYRLTLSNDDLDRVDLRLIFDNP 108

Query: 111 RLVGSHFFSPDLG-SRRIISVTPS---EGFSLDRIPNSDSDVFRITINPGAVVTFIMEIS 166
            L     +  D   S    +             R   S    F   I+ G      + + 
Sbjct: 109 TLDALTIYVIDQNPSDSASARLGDSVDNVPLAQRALPS----FAFQISAGETTQVWLHLQ 164

Query: 167 T--PNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAM 224
           T   +   + L   + +        L  G  +G+  ++A +  + Y   R +  +     
Sbjct: 165 TVGSSQLSMRLLTEDQFHQFEKRIYLLWGHFVGILIIMAAYNAVLYSGVRDTTFLHYIGY 224

Query: 225 AWVVLGYISIDFGFLSKLVNLP-SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
              ++  +    G+   ++ +P    L  +    + A+  + ++F   +L   R   +  
Sbjct: 225 LVSIMLMMGTIHGYGYLILPVPVQLFLSHYIVAVQSAVGLATLLFARTFLRIKRDSLRPY 284

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFII-YHGMKGYERAVLLIP 342
                    +  L  +SF  P   ++   + +  ++      +I Y   + +      + 
Sbjct: 285 QWYRFICGALLGLIVLSFLLPENLSARVLLVMQLLIYVSVAMMIGYRFRERFRWTRYYVI 344

Query: 343 AWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
           +W+  F   +         ++   I        ++  +++   +I   LA         S
Sbjct: 345 SWLPFFTGALIGMWLFGGLVEYSFITRH----ALMFGMILEMILISMALADRM------S 394

Query: 403 DGERQSL 409
           + ER  L
Sbjct: 395 EAERFRL 401


>gi|268679528|ref|YP_003303959.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617559|gb|ACZ11924.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 566

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 170/416 (40%), Gaps = 26/416 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +T + N     + L               T+M+ +ID +  IN + G    D++L  +
Sbjct: 164 DPITQLENASVLYESLAHY------TKPHPLTLMLYNIDDFSLINQMYGSEFADEILKKV 217

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +   L     L R + + F I+   + N+ +     +             ++ I +T
Sbjct: 218 GEYLHFNLPEDAYLYRYNSDEFVIVFDPQLNTPEAFAIQLQAFFRETPLCEYNDKPIYLT 277

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR-----SDRVMIKED 710
            S G A+       ++ +L NA  A+   + +G  +  S   +               + 
Sbjct: 278 LSCGIATS----SDATVLLSNARTALRETRLKGVPNQFSIYNTENSALKKSETDNQWIQK 333

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L +A+E   L   + PI+    +++   E L + +  +   I+ + F+  A    +++ +
Sbjct: 334 LRIALEEDRLIPYFQPIVDTKTQQLEKYECLARIEEYE-EIIAPARFLEAARRSGLMENM 392

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ML ++ +            P+   +N+  +D+L +   + ++A        PS +  
Sbjct: 393 TRMMLHKVFKTFAR-------TPMHFSLNLTHEDILSDSFIDFLRAKQELYAIHPSCVTF 445

Query: 831 SFSESV-VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              E++ ++    ++   L RL+++G SL LDDFG++ S  S L  +  D +K +G  + 
Sbjct: 446 EILENIILLETDTKAMNTLHRLKEMGYSLALDDFGSERSNFSRLNALGIDFLKIDGQFIL 505

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           G         I+ SI  MA N+   ++A+ +  + + + +  +G DY Q   +  P
Sbjct: 506 GIDHNSNNQNIVHSITKMAHNMNIKVVAEFVSTQAEFEMVKHLGVDYAQGYFIGMP 561


>gi|146312324|ref|YP_001177398.1| putative sensor protein [Enterobacter sp. 638]
 gi|145319200|gb|ABP61347.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Enterobacter sp. 638]
          Length = 1117

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/563 (18%), Positives = 207/563 (36%), Gaps = 13/563 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 550  EVKELNEALFQEKERLHITLDSIGEAVLCTDVDMHVTFMNPVAEKMSGWTQQEAMGQPI- 608

Query: 452  WLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L  +HI   +N   + +       R  +  +  + +       +   I P+S  +G  +
Sbjct: 609  -LSVLHITFSENGPPMENIHSGDMSRSDINQDVVLHSRTGGTFDIHYSITPLSTLDGQNI 667

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + +  D+TE +K L  +  +A  D LT + NR SF   L  +L     D + R  ++ 
Sbjct: 668  GSVLVIQDVTESRKMLRQLSYSASHDGLTHLANRVSFESHLKRLLQTV-HDTHQRHALVF 726

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G A GD +L  L+  +  +L+  D+LARL G+ FG++L   N     
Sbjct: 727  IDLDRFKAVNDTAGHAAGDALLRELSSLMLSMLRSSDVLARLGGDEFGLLLPDCNVESSR 786

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                  +            R   + AS G      S    +E++  A++A Y +K+ G  
Sbjct: 787  YIAGRIIHAINDYQFMWEGRLHRIGASAGITLLDDSNYQVAEVMSQADIACYASKNNGRG 846

Query: 691  HVESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             V  +     R       + + E   +  +N  L          + E        ++   
Sbjct: 847  VVTVYEPQQERIHSARGMMSLDEQWHMIKDNQLLMTGRSVASPRIPESSNFWLISLRLWT 906

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +   +    F     E  ++ A++  + +   R   +   Q     + + + ++++ L 
Sbjct: 907  SQGDVVEEQAFRSGLMEPDLLHALDRRIFQTFFRTYAT---QVATKGMGVALPLSAEGLS 963

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
               L   +  L+ K+      + L      +       +  L +LR  G  + L   G  
Sbjct: 964  STTLVSELLDLLEKSPLQGRLLHLVIPVETLQNQDVHIQNGLQKLRLAGCRIVLCHVGRN 1023

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
              + ++L     D +  +  L+T          ++  I   A+ +    IA      + +
Sbjct: 1024 MDVFNHLTPHMADYLLLDPELVTNVHGNLMDEMMVSIIQGHAQRLGMKTIAGPSNQPLMM 1083

Query: 925  KELTRMGCDYIQDSHVASPLGFN 947
              L+ +G DYI    +A P    
Sbjct: 1084 DTLSGIGIDYIYGDCIAEPQPLE 1106



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 96/316 (30%), Gaps = 22/316 (6%)

Query: 224 MAWVVLGYISIDFGFLSKLV--NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNR 277
           +A        +  G L+ L+  +       +    SE   + +L    ++F   YL    
Sbjct: 135 LAIGSAAIPPLLGGVLAWLLVPSEEPLRNFLVWVLSESIGALALVPLGLLFKPHYL-LRH 193

Query: 278 WHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA 337
            + K+   T   +A   +L  ++  +     +                +++  ++     
Sbjct: 194 RNPKLLLETLVTMAVTLVLCWVAITFLPWPFTCV-----------IVLLMWSAVRLPRLE 242

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFS 397
             L+    ++ +  +           N  +       L  +++L+   V+  V+      
Sbjct: 243 AFLVFLVTVMMVSLMMATNPTPMTTQNSGVML-NAPWLPFLMMLLPANVMTMVMYAFRAE 301

Query: 398 QG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +  I    ER   A+  S   +    I    + T   +   LG +   +      +    
Sbjct: 302 RKHITESEERFRNAMEYSAIGMALVGIDGQWLQTNKALCEFLGYSQTEL--QSLTFQQLT 359

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              D       L+            E R    + +  W ++ +  + +++G  L +I   
Sbjct: 360 WPEDLHTDLESLEQLARGDINSYSLEKRYYTRNGEVVWALLTVSVVRHTDGSPLYFIAQI 419

Query: 517 NDITEQKKSLEGILCN 532
            DI + K +       
Sbjct: 420 EDINDLKHTEWVNKRL 435



 Score = 84.6 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+WD+  D ++    +  +  + +  +    + W   I   DR  
Sbjct: 436 MERITLANEAGGIGIWEWDLQPDVISWDKRMFEMYEIPAH-IKPTWQLWNDSIIPEDRAY 494

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++   +  R    + EFR+R  +     +      + N  G++ R +GI  D+TE K
Sbjct: 495 AEQVIRDSLMAR-VPFKLEFRIRVKEG-VRHIRSLANRVLNKQGEVERLLGINMDMTEVK 552

Query: 524 KSLE 527
           +  E
Sbjct: 553 ELNE 556


>gi|304398741|ref|ZP_07380612.1| diguanylate phosphodiesterase with GAF sensor(s) [Pantoea sp. aB]
 gi|304353688|gb|EFM18064.1| diguanylate phosphodiesterase with GAF sensor(s) [Pantoea sp. aB]
          Length = 593

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 185/424 (43%), Gaps = 11/424 (2%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+PNRQ  +  L  +     T       +  ID+ +  ++   +G+   + +L  +
Sbjct: 167 DPVTGLPNRQRLIRDLQFLAASGDTTPRRLVLIDCIDMPRAYELARSMGMGPVESLLKDV 226

Query: 596 TRRI--GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              +         ++L  ++  RF  +L  + + L     A  +    A         + 
Sbjct: 227 ATLLPLRLRPAPCEMLYTIATGRFA-LLTRQESRLTANWVATKLAGISAD--IGDGLSVA 283

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           +    G AS+ + ++ + E+L+ A  A++ A      +   S    +  +    +  DL 
Sbjct: 284 LMTHTGEASFKTGELPAKEILRRALSALHEAITRDIASMPFSEATDTRHTQDFTLMHDLA 343

Query: 713 LAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
            A+     L+L Y P I L   + +GLEALI+W HP+ G +S ++F+  A +  ++  + 
Sbjct: 344 TAIRQDKGLWLAYQPKICLHSGKPIGLEALIRWQHPQRGELSPAQFLPFAGQTELLSELT 403

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
            ++ E +   +   R+     PI   IN++S D       + ++  +       S + + 
Sbjct: 404 TWVTEHVIARLSRLRNSYIQLPIT--INVSSSDFSRVGFADELEERMISAKLPVSLLGVE 461

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E+  +     +   L  L+  G  ++LDDFGT  S +SYL  +P D +K + SL++  
Sbjct: 462 CLETERILESPAAIQGLEMLKLRGFDISLDDFGTGYSNISYLRRMPLDVIKLDRSLISEI 521

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   I RSII M K+++  ++A+ +     +  LT  GCD  Q    + PL   ++
Sbjct: 522 ASDTASRVIARSIIAMLKDLDYRVLAEGVENAETVTALTEFGCDQAQGFFYSRPLPEAAL 581

Query: 950 LKLL 953
            + L
Sbjct: 582 DEWL 585


>gi|186472539|ref|YP_001859881.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
 gi|184194871|gb|ACC72835.1| diguanylate cyclase/phosphodiesterase [Burkholderia phymatum
           STM815]
          Length = 780

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 176/469 (37%), Gaps = 27/469 (5%)

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
             D      +  +  +  +      + G+  +        + +   A  D LTG+ NR++
Sbjct: 156 HGDVSVVCWMWVLIALPTAAVFHFGFYGLRRN---HFLLEDRLARLAATDPLTGLQNRRA 212

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           FL++    L LS+ D   + + + +DID +K +ND  G AVGD  L  + R + E+    
Sbjct: 213 FLEQ--AALRLSSLDPGAKTSAIFLDIDYFKSLNDQFGHAVGDQALSDVARVLKEMTGAG 270

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           DI++R+ G  F ++             A  +R +I        +   + AS G A +   
Sbjct: 271 DIVSRIGGEEFALL--HGAALRPAVQLAETLRAAIGRIARPDGQ---LGASFGVAEYRP- 324

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED---------LCLAVEN 717
             +   +L  A+ A+  AK+ G N V + R +     R+    D         +    ++
Sbjct: 325 GESVMALLDRADEALLRAKYSGRNRVCAERATLVDPVRLARTHDDADGAASQPVRQQWDD 384

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             L   + P+  L  ++ VG EAL++ +      +  +              ++   +  
Sbjct: 385 FWLTSHFQPLYSLSHQKQVGFEALLRGEREDGAQVPPAVLFSPKPFTDQ-GELDR--VSH 441

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
               + + R        ++ +NI     + +   + +  +      S  R+ L   ES  
Sbjct: 442 AL-HLGNARRLIPD-DAWVFLNILPSTFVADGYPDQLAQIARSAGISAGRVVLELLESHG 499

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-STEKRI 896
            G+ +    +  + R  G  + +DDFG   S L  L  I  D VK +G L+   S     
Sbjct: 500 -GSVDEMSRVASQYRDHGFLIAVDDFGAGHSNLDRLLRIRPDLVKLDGELIRAKSHGADQ 558

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            IL  ++ +       ++ + +     +        D+ Q   +  P  
Sbjct: 559 PILPKLVSLLHQAGMLVVVEGVETTEQLILAVESNVDFAQGFLLGRPAP 607


>gi|325927657|ref|ZP_08188886.1| EAL domain-containing protein [Xanthomonas perforans 91-118]
 gi|325542024|gb|EGD13537.1| EAL domain-containing protein [Xanthomonas perforans 91-118]
          Length = 603

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 179/422 (42%), Gaps = 12/422 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L  +   +    ++      I++   +  N+    LG+   ++++   +
Sbjct: 180 GLLNTRQLQSDLDAL---AFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHAS 236

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T 
Sbjct: 237 YVLTRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTF 295

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  ++++++   +A+  A +        S            +  D   A+
Sbjct: 296 HAGVVRFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQAL 355

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  +  LV+ P I L D  + G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 356 KAGDFRLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPLFEKTALMCTVTNWVI 415

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E     +  WR Q       I IN++S+D  +  L   +           + I+L  +E 
Sbjct: 416 ESALVQLAEWRTQGLD--FSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEG 473

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K 
Sbjct: 474 RWLRSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKT 533

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +
Sbjct: 534 GMQMRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYV 593

Query: 954 KE 955
           K+
Sbjct: 594 KQ 595


>gi|254457331|ref|ZP_05070759.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086123|gb|EDZ63407.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 695

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/418 (21%), Positives = 177/418 (42%), Gaps = 30/418 (7%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LT + NR++F  +L  I           P +++I+ID +K IND+ G  VG+ +L  
Sbjct: 289 YDHLTDLHNRRAFEIQLKKI---------TEPHLLIINIDGFKYINDIYGNDVGNVILQE 339

Query: 595 LTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           L + + +    +    + RL G+ FGI+    ++   +       +K       + +  +
Sbjct: 340 LAQILKDEFSNRPNTCIYRLGGDEFGILFNKISSENALEIAKKLEKKISNYDFIVYDLTL 399

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIK 708
            +  SI       +  ++  +L+N +LA+   K      +  +  +    +   D +   
Sbjct: 400 HLLVSI-------ASNSTVPILENTDLALKLLKKDHTLRILEYNDNLNIKTDVKDNMNTI 452

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E +  AV N  +   + PII L   +I   EAL++        +   +F+ I+++     
Sbjct: 453 ELIKTAVSNDRIVPFFQPIINLKTSKIEKYEALVRLKLENGTFLPPFKFLDISKKSSYYH 512

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I   M+E+  +    +      P     INI+  D+LD +L   +  +++       R+
Sbjct: 513 FITKTMIEKTLKMAQEF------PQYRFSINISMIDILDAKLTHMLFEILNANPEVAKRL 566

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +   ES  + N +  +  + +L   G  + +DDFGT  S  SY   +  D VK +GS++
Sbjct: 567 DIELLESENLQNLQVVQDFITKLHAFGSKILVDDFGTGYSNFSYFSNLDIDLVKIDGSIV 626

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           +          ++ SI   +  +    +A+ +        L  +G +Y Q  + + PL
Sbjct: 627 SEIETDNKKLHMVTSIHKFSNGMNMKNVAEFVETREVALLLKEIGIEYAQGYYFSQPL 684


>gi|95928667|ref|ZP_01311414.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135457|gb|EAT17109.1| diguanylate cyclase/phosphodiesterase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 616

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 170/416 (40%), Gaps = 31/416 (7%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LTG+ NR      L              P + +++ID +K IN+  G  +GD +LV
Sbjct: 217 FTDELTGLGNRLCLKRDLLRC---------RFPQLTLVNIDGFKDINNFYGGQIGDKLLV 267

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   + +L+     + R+SG+ + ++  +    + +      + +       + + E  
Sbjct: 268 RVGDYLSKLVPSQTRIYRISGDEYALMCDTSPRCVSVEYLMERINE---QRFVIGDSEFR 324

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRSDRVMIKED 710
           ++ + G A          ++L+ A+LA+  AK     +V        S      ++    
Sbjct: 325 LSLTAGVAQGPH------KLLERADLALKEAKRIFRPYVHYSPDLHSSQSSHANLLWTSK 378

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +   VEN+     + PI     ++I   E+LI+        +    FM  A +  +   +
Sbjct: 379 IKEGVENNRFCAYFQPIYDNNSQKISHYESLIRLVERDGTIVGPDFFMEAARKSRVSSYL 438

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             FM+++    I           +   +N++  D++D+E  + +   I K   +  R+  
Sbjct: 439 TTFMIDQALNCIEE-------HDVGCTVNLSIDDIVDHESRQTIIEHIRK-KTARERLIF 490

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              ES  + N +  +  + ++   GI + +DDFGT  S   ++  +  D +K +G L+  
Sbjct: 491 EIIESQGVENYQVIKSFIDQVHIYGIKVAVDDFGTGYSNFDHISQLDVDFLKIDGGLIGQ 550

Query: 891 STEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +   A  I+ +I+  A+ +    IA+ +  E   + +  +G DY Q      P 
Sbjct: 551 LNDSDRAQTIIEAIVHFARELGIATIAEYVASEELQQRVVDLGIDYSQGYLWGRPQ 606


>gi|310829888|ref|YP_003962245.1| putative signaling protein [Eubacterium limosum KIST612]
 gi|308741622|gb|ADO39282.1| putative signaling protein [Eubacterium limosum KIST612]
          Length = 640

 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/433 (21%), Positives = 169/433 (39%), Gaps = 31/433 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG   RQ FL  +   L      D     ++ + +  +K  N+V G+   D +L  +
Sbjct: 222 DELTGTFKRQVFLQMIEMHLKNGKKGD-----IIALALRDFKFANEVFGVKTCDRLLKEV 276

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +  L      + R  G+ F   +   N +         +      P +    + ++ 
Sbjct: 277 AGFLKGLA-PTGRVYRFDGDVF--CIAEPNGAENTDRLVNLIVDRFKKPWHFQGIDYSLN 333

Query: 656 ASIGFASWTSSK-ITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCL 713
            S+G          T  E++   + A+  +K    G        +     +  I+  L  
Sbjct: 334 CSLGVVPMGKGGTETVDEIVSAIDFAIQESKHRENGVVRGGEIFNEKFRRKNHIRAMLAY 393

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E     + Y PI  L        EAL++   P++G I   EF+ +AEE  MI +I L 
Sbjct: 394 ALEKDGFEVHYQPIYCLATGRFATCEALVRMRDPEFGLIPPDEFIPMAEENGMIVSIGLV 453

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E++ + + +           I +N++    +   L + + A++      P R K   +
Sbjct: 454 VFEKVCQFMTAHPYTEGGFE-TIGVNLSVVQCMQESLADDLIAVMEHYKLPPGRFKFEIT 512

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST- 892
           E+V   +    R  + RL   G +  LDDFG   S ++ +  +PF  +K + SL    T 
Sbjct: 513 ETVAAASMSTLRSTMERLIDYGCAFALDDFGIGYSGVTNMLNLPFKLIKLDKSLTDRLTG 572

Query: 893 -EKRIAILRSIIPMAKNIETTII---------AKDIYGEIDIKELTRMGCDYIQDSHVAS 942
             +    + +II +   +   +I                  ++ L  +GCDYIQ  + + 
Sbjct: 573 EPRTRIAVEAIISLIHRLSMRVIAEGVEVAEE---------VEILRELGCDYIQGYYFSR 623

Query: 943 PLGFNSILKLLKE 955
           PL   +   L+K+
Sbjct: 624 PLPEAAFTALVKK 636


>gi|319789979|ref|YP_004151612.1| diguanylate cyclase/phosphodiesterase [Thermovibrio ammonificans
           HB-1]
 gi|317114481|gb|ADU96971.1| diguanylate cyclase/phosphodiesterase [Thermovibrio ammonificans
           HB-1]
          Length = 407

 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/418 (21%), Positives = 168/418 (40%), Gaps = 30/418 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+P+R+SF ++L ++      +      + + DID +K +N   G  +GD VL + 
Sbjct: 3   DEVTGLPSRKSFFNKLRSV------EPGTPVIIAIFDIDDFKFVNFSHGYQLGDAVLKAT 56

Query: 596 TRRIGELL---KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              +  +         +AR   N+F ++L  +   ++I +        I     L +  I
Sbjct: 57  GHHLKRVFKKYFSHFFVARTGANQFSVLLFDKVPIIRIKEVFNRHIHLIE--FKLKDEFI 114

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKED 710
            VT S G +S    +    E+   AE A+Y AK  G N +  ++            I++ 
Sbjct: 115 RVTVSGGVSS---GQEQYFEVFSQAEDALYTAKREGKNELVFYQHFSLQDAKKFREIRQK 171

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ N  ++  + PI+ L   EI G E L +  +          F  +A+ L +   I
Sbjct: 172 LIEAIRNKAVFPCFQPIVSLRTGEIFGYEVLSRIKYRDEILKGDYVF-SVADSLALTPEI 230

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  +     +            P  +  N++ K          +  +  +     S +  
Sbjct: 231 DKLLFINTIKFF---------GPYKLFFNLSMKYFFRE--LNTIFQIAKQYNLDLSNVIF 279

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES  + + + +  +    ++    + +DDFG   S   YL   P D +K +GS + G
Sbjct: 280 EITESQKLMSEKAAISIFTLFKEFNAGIAIDDFGAGYSNFMYLKKFPADVIKIDGSFIRG 339

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           + E R    I++SI+ + K  +   +A+ I  E   + +  +G    Q   +  P   
Sbjct: 340 AKEDRKDLTIVKSIVEVGKAFKLRTLAEFIEDEETYRLMKAIGVSLGQGYFIGKPAPE 397


>gi|323692270|ref|ZP_08106511.1| hypothetical protein HMPREF9475_01374 [Clostridium symbiosum
           WAL-14673]
 gi|323503685|gb|EGB19506.1| hypothetical protein HMPREF9475_01374 [Clostridium symbiosum
           WAL-14673]
          Length = 1052

 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 174/424 (41%), Gaps = 17/424 (4%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PN Q F+++   IL    T       ++ +DI  ++ IN   G   GD +L ++      
Sbjct: 3   PN-QLFIEKSEKIL---RTRPKGCCYLLYLDITDFQYINFCYGTEAGDRLLKAVNDY--T 56

Query: 602 LLKFPDILA-RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
                 +L  RL  + F  IL     +        A+  S+       ++++     + F
Sbjct: 57  AGLPFVLLCERLYSDYFLCILSFPGEAPD-EKAVQAVEHSLNG-FMAEQQKLYPACKLRF 114

Query: 661 AS--WTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           A     +     S  +++A LA   AK    G   + S  +      R  +++ L  AV 
Sbjct: 115 ACGLCRTGTQELSHTIESANLARKEAKRLDTGSAVLYSEELVQKTVTRYELEQTLNQAVR 174

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
                    P + L +  I+G EAL +        I    F+ + E    +  ++L +  
Sbjct: 175 EQRFCFYLQPKVDLTNGRIIGAEALARRIGQDGTVIYPDSFLPVMESSGTVVELDLLICR 234

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           ++   +     Q   P +   +N++   + + +    + A+  +    P  ++   +E++
Sbjct: 235 QVCAFLSGRLRQGL-PVVRTSVNLSRLHIKNKDTASSLHAIAQEYQIPPELLEFELTETI 293

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--- 893
           ++     ++ L+ +LR  G  +++DDFG+  + ++    + FD +K +G  ++   E   
Sbjct: 294 LLDELTGAKKLIDQLRTYGYRVSIDDFGSGYAGINIWQELNFDCLKLDGCFLSEDPELKK 353

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K  A++ +II +   +  +I+ + +        LTR+GC  +Q  + + P+  +    + 
Sbjct: 354 KNEALVPNIINIGHRLGISILCEGVETAGQCTYLTRLGCTTVQGFYFSHPIAPDVFYDIY 413

Query: 954 KERF 957
           +++ 
Sbjct: 414 RKQN 417



 Score =  178 bits (451), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 144/385 (37%), Gaps = 21/385 (5%)

Query: 317  SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
               +       +           L  A + I  W + +     K                
Sbjct: 679  IATVLSAPSGNWKLGTRDRIPFYLSRADLGINDWHVTVLYRADKAAARSNRITTASLCCT 738

Query: 377  LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG-SGDIVWDWDIVRDRVTTTPDIA 435
              +      +   +       Q  FS  E++ L +   S  +++D+D ++D +  TP+  
Sbjct: 739  AALFTAIILIYLIIFLYMKKIQKKFSMEEQRYLLLEQFSDTVLFDYDCLKDTIRFTPNAD 798

Query: 436  TILGLASGSMHGPIRNWLPYIHINDRDNFRT----ILDSFVGYRRGRLQYEFRVRAA-DN 490
             +       +         Y+H  D          I+ S +  +  + +   R+    ++
Sbjct: 799  RLF--KIHDLVQH-----NYLHGLDVKYIYAGDMEIIQSLLMGQSVQKEIRIRLLHPTED 851

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            ++ W + + R +   +G ++  +G   DI EQK   + ++  + +D LTG+ NR S   +
Sbjct: 852  RYFWCLAQFRYLF-EHGTLVSVVGKITDIDEQKLHEDYLIEISEKDGLTGLRNRASAEAK 910

Query: 551  LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
            +   +      +    T+++ID+D +K+IND  G   GD  L+ L   + +  +  DIL 
Sbjct: 911  IRESI-----QNGADGTLLMIDVDNFKQINDQFGHTAGDSALIFLADCLQKTFRSNDILG 965

Query: 611  RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            R  G+     +    N          +   I    +  +    ++ SIG A      ++ 
Sbjct: 966  RAGGDELIAYMEGVCNRNIAQKKVELLMYYIRQ--STSQGLPFISVSIGIALCPDDGMSY 1023

Query: 671  SEMLKNAELAMYHAKHRGGNHVESF 695
             E+   A+ AMY AK+RG    + +
Sbjct: 1024 EELFTAADQAMYEAKNRGKMQAQFY 1048


>gi|37913136|gb|AAR05386.1| sensory box-like protein [Aeromonas hydrophila]
          Length = 314

 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 149/311 (47%), Gaps = 4/311 (1%)

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK 708
             E+ +T S+G AS +      S++L  A+LAMY AK  G + + S+            +
Sbjct: 2   GNELGITVSLGVASVSEQTSDISQLLHQADLAMYQAKRNGRSRIVSYSEECSAQTWASPE 61

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+    +   + P+IRL D  + GLE + +W   +     + +F+ +AE+  +I+
Sbjct: 62  EMLARALRAGRIVPYFQPVIRLKDSRLTGLEVMARWITEEGVLKDAFDFIPLAEQCGLIQ 121

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI--SKTLYSPS 826
            ++  +L    + +  W   +      + IN++ K L+ +E    +  +I       SP 
Sbjct: 122 ELDYQILRHTCQQLKEWLPLSGQSKFKVAINLSGKHLVSHEQIMQLVEIIESESEGISPG 181

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +   F+E  +      +   L  LR  GI ++LDDFGT  S L+ L + P D +K + S
Sbjct: 182 YLIFEFNERELSRQDSDALTSLHELRAKGIQISLDDFGTGFSSLNALFHFPVDYIKVDDS 241

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
                  + K +A++R++  + ++++ T++ + I  +  +++L  +GC   Q  +++ P+
Sbjct: 242 FTHRMLQSPKDLALIRAMRDICQDLDFTLVVEGIENQQQLQKLIDLGCLMGQGRYISPPM 301

Query: 945 GFNSILKLLKE 955
               I  LL +
Sbjct: 302 PGADITPLLTQ 312


>gi|260772609|ref|ZP_05881525.1| hypothetical protein VIB_001058 [Vibrio metschnikovii CIP 69.14]
 gi|260611748|gb|EEX36951.1| hypothetical protein VIB_001058 [Vibrio metschnikovii CIP 69.14]
          Length = 826

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/602 (16%), Positives = 213/602 (35%), Gaps = 37/602 (6%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
           + +I    +  +  ++  +   +++  +        I    +        +       D 
Sbjct: 91  SLVIAEQTLIYVEFLIERVSTVLLKGTVQPLMILGSIRELAKLFEDLFDNTHHGFMLTDQ 150

Query: 424 VRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
               +          G     + G     +    H  D   F   +   + +  G     
Sbjct: 151 ETRILACNRYFEQYSGFKQSELLGLKASIFNSQKHSAD---FYQSMWHDINHY-GSWSGV 206

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
              R A  +     + I+ ++  +G +  ++G+  D++E    +         D LT +P
Sbjct: 207 ILNRLASGKISPQELTIQKITLQDGRV-FFLGMTLDLSENLYRVADT-PLGEIDLLTQLP 264

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
             + F D L+  +      D+    V+V    ++            + V+      +   
Sbjct: 265 TEEKFKDLLS--IYQKENQDDTTLIVLVFQ-PQFST-----DHHHAEMVM------LSNF 310

Query: 603 LKFPDIL---ARLSGNRFGIIL-----ISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L   + +     +  + + + L         +  +I        + +     +      +
Sbjct: 311 LVNSEEVKLAGYVGKDIYAVCLACTKCQKTTDFRQIQHAIRRFMQDLKKESEI--YATVI 368

Query: 655 TASIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
              IG +       T + M+ +A  AM   HA            +      R  +++ + 
Sbjct: 369 GGRIGVSVLELDAKTPARMVTHAMQAMLEQHAGESKTISFYHSEIHQQVKRRKSLEDLVS 428

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   +L + Y PI+     EI   EAL ++   K    ++ E + IAE+L +I  ++ 
Sbjct: 429 KAISERDLEVHYQPIVDTKTWEIAKFEALCRFKPTKDNAFTTQEMISIAEDLNLISELDR 488

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDN-ELCEGMQALISKTLYSPSRIKLS 831
            +     + +   +       I + IN +    +D  ++      +I     SP  I + 
Sbjct: 489 TVGILSLQALPKIKMLFGQH-IGLTINRSFNSKMDAVQILTNTLEMIENYTDSPQSITIE 547

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES    +  +    L  LR+ G+++ +DDFGT  S  +YL    FD +K +   +T  
Sbjct: 548 LTESAYFDSQSQQANALKSLREQGVTIAIDDFGTGYSSFTYLSDCHFDYLKIDREFVTDI 607

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                +  I+  II +  ++   ++A+ +  E ++  L  +G DY+Q    + PL F S+
Sbjct: 608 QLGSNKCKIVNMIIGLCHSLGIKVVAEGVETEQEVMVLKSLGVDYMQGYFFSKPLPFTSL 667

Query: 950 LK 951
            +
Sbjct: 668 HQ 669


>gi|309778843|ref|ZP_07673614.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Ralstonia sp. 5_7_47FAA]
 gi|308922367|gb|EFP67993.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Ralstonia sp. 5_7_47FAA]
          Length = 471

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 176/455 (38%), Gaps = 36/455 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D ++G+P+R  F+  L  +   +  D      +++I  D + +  + LG     +V+   
Sbjct: 13  DPISGLPDRGRFVQLLAAMPQPARQD--AIGALLLIGFDHFAEATNTLGPLAAREVIAEC 70

Query: 596 TRRIGELLKFPD-----ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
             R+  L          I+ R+    F +      ++  + D A  +  ++  P      
Sbjct: 71  ASRLEALSVPAADGNAPIVGRIGPETFAVACPDFVSAQDVHDLARRISAALTRPFITHGY 130

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV------------- 697
           E+  + SIG   +      ++ +++ A+ A+Y  +H        +               
Sbjct: 131 ELVCSCSIGMTLFEGMPSDAARLIEQADRALYGVQHGAEPSPALYAPAAMPPGTGTNVAR 190

Query: 698 ---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  ++   +   L  A+   +  L   P + L D  IVG E L++W  P+ G ++ 
Sbjct: 191 ADGYDAIAEHPRLAAQLRHALARRQFSLNLQPQLSLTDGRIVGYEFLLRWSSPELGGVAP 250

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQ---------ANMPPIFILINIASKDL 805
           ++F+ I E+   I+ +  ++L+  A+ +     +          + P +   +N++   L
Sbjct: 251 ADFLPILEQTGDIREVGHWVLDSAAQMLAGLLREESERAGRNSRHQPGVHAAVNLSVAQL 310

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           LD +L + ++ +  +     +R+    SE  +      ++  +  L   G  + ++DFG 
Sbjct: 311 LDPQLSDVVRDIAVRHAVPTTRLVFEISEHTLHRANGSAQKAVEALHACGARVAVEDFGA 370

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
               L  L     D VK + +++   S      +L+ ++  A      +IA  +     +
Sbjct: 371 TAHSLDCLATFRPDQVKLDQAIVNAVSNASDHTVLQRLVTAAHGAGVPVIATRVETAAQL 430

Query: 925 KELTRMGCDYIQDSHVASPLGF---NSILKLLKER 956
             L    CD IQ   ++ P      +    ++ ER
Sbjct: 431 HALRACRCDVIQGYLLSQPFPARWIDDTQDVIAER 465


>gi|329902782|ref|ZP_08273255.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548620|gb|EGF33276.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 233

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++W HP+ G +S  EF+ +AE+  +I  I  +++E   R +  W    +M  + I +N
Sbjct: 1   MLVRWQHPQRGMVSPMEFIPLAEDTGLILPIGTWVMETACRQLACWARVPSMEALTIAVN 60

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++++    ++    +  ++++T   P R+KL  +ES++  N  +    +  L++ GI  +
Sbjct: 61  VSARQFQQSDFVAQVIDVLARTGARPQRLKLELTESLLAANLHQIIEKMQALKETGIHFS 120

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S LSYL  +P D +K + S +          AI+R++I +A  +   IIA+ 
Sbjct: 121 LDDFGTGFSSLSYLKLLPLDQLKIDQSFVRDILTDPNDAAIVRTVIALANTLGLGIIAEG 180

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +  +     L   GC   Q    + PL          +R
Sbjct: 181 VETDAQRSYLADAGCHAYQGYLFSRPLPVAEFEVFAGQR 219


>gi|294624858|ref|ZP_06703516.1| signal transduction protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600859|gb|EFF44938.1| signal transduction protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 594

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 181/430 (42%), Gaps = 17/430 (3%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L  +   +    ++      I++   +  N+    LG+   ++++   +
Sbjct: 171 GLLNTRQLQSDLDAL---AFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHAS 227

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T 
Sbjct: 228 YVLTRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLLKPVDAAGVPMSLTF 286

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  ++++++   +A+  A +        S            +  D   A+
Sbjct: 287 HAGVVRFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQAL 346

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  +  LV+ P I L D  + G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 347 DAGDFRLVFQPRIDLEDLSVTGFEALLRWHHASLGPIGPDEFIPLFEKTALMCTVTNWVI 406

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E     +  WR Q       I IN++S+D  +  L   +           + I+L  +E 
Sbjct: 407 ESALVQLAKWRAQGLD--FSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEG 464

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K 
Sbjct: 465 RWLRSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKT 524

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +
Sbjct: 525 GMQMRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLARPMEAHLVADYV 584

Query: 954 K-----ERFP 958
           K     +R P
Sbjct: 585 KHTAAVQRLP 594


>gi|170692779|ref|ZP_02883941.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
 gi|170142435|gb|EDT10601.1| diguanylate cyclase/phosphodiesterase [Burkholderia graminis C4D1M]
          Length = 777

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 165/433 (38%), Gaps = 27/433 (6%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             + +   A  D LTG+ NR++F+ +    L   A         + +DID +K +ND  G
Sbjct: 191 LEDQLAQLAATDPLTGLQNRRAFVAQAERRLAELARGGEASA--IFLDIDNFKSLNDRFG 248

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            AVGD  L  + + + E     D ++R+ G  F ++  S +        A  +R +IA  
Sbjct: 249 HAVGDLALRQVAQVLLEQTTRGDSVSRIGGEEFAVL--SCDGLAGALRLAERLRGAIAAL 306

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                    +TAS G A           +L  A+ A+  AK  G N V + R       +
Sbjct: 307 ERPDGH---LTASFGVAEHRGD-ENIMVLLDRADEALLRAKQSGRNRVCAERPVPDAPLQ 362

Query: 705 VMIKED--------LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++I++              E+  L   + P+  L  ++ VG EAL++ +      +  + 
Sbjct: 363 LLIEDACGTAGAGGSRHKWEDYYLTSHFQPLFSLSHQKQVGFEALLRGELDDGTLLPPAV 422

Query: 757 FMLIAEELCMIKAINLFMLERIAR--DIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
                         +  +L+R +    + + R        ++ +NI     +     + +
Sbjct: 423 LFARKPAN------DEGVLDRASHAVHLANARASLP-SDGWLFLNILPATFVAEGYADEL 475

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +   +P ++ L   ES   G+ +         R+ G  + +DDFG   S L  L 
Sbjct: 476 TGIVRRVGLAPEQVILEILESHG-GSVDEMSRAAALYREHGFLIAVDDFGAGQSNLDRLL 534

Query: 875 YIPFDTVKFNGSLMTGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            I  D VK +G L+  +       IL  ++ +       ++ + +    ++        D
Sbjct: 535 RIRPDIVKLDGELIRATGHGTEQPILPKLVSLLHQAGMLVVVEGVETTEELILAVESNVD 594

Query: 934 YIQDSHVASPLGF 946
           + Q   +  P   
Sbjct: 595 FAQGYLLGRPAPE 607


>gi|289670438|ref|ZP_06491513.1| hypothetical protein XcampmN_18618 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 594

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 179/425 (42%), Gaps = 6/425 (1%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ N +     L  +   S     +   + V D     +    LG+   ++++   +  +
Sbjct: 171 GLLNTRQLQSDLDALAFGSHCLPTIAAFIEVYDTQAANEARQALGMQPLEELIRHASYVL 230

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T   G
Sbjct: 231 TRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLQKPVDAAGVPMSLTFHAG 289

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAVENS 718
              +   +  ++++++   +A+  A +        S            +  D   A++  
Sbjct: 290 VVRFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASQDDAIQRSYRLALDAEQALDAG 349

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +  LV+ P I L D  + G EAL++W H   G I   EF+ + E+  ++  +  +++E  
Sbjct: 350 DFRLVFQPRIDLADLSVTGFEALLRWHHASLGPIGPDEFVPLFEKTALMCTVTNWVIESA 409

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
              +  WR Q       I IN++S+D  +  L   +           +RI+L  +E   +
Sbjct: 410 LVQLAQWRAQGLD--FSISINLSSRDFGNINLAADVINRCKDLAIPTTRIELEITEGRWL 467

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--I 896
            +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K    
Sbjct: 468 RSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIANKAGMQ 527

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
               +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +K+ 
Sbjct: 528 MRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYVKQT 587

Query: 957 FPLVK 961
             L +
Sbjct: 588 AALQR 592


>gi|308189322|ref|YP_003933452.1| signal transduction protein [Pantoea vagans C9-1]
 gi|308055937|gb|ADO08106.1| Predicted signal transduction protein [Pantoea vagans C9-1]
          Length = 593

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/486 (20%), Positives = 198/486 (40%), Gaps = 27/486 (5%)

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGI---------ANDITEQKKSLE--GILCNAFQ--- 535
              +       P+ N  G +L  + +          + +T  K           A+    
Sbjct: 105 GAPYIRFYAGVPLKNREGIVLGTLCVTDTVPHPFGIDQVTTLKLLAALVMSFLEAWHSAG 164

Query: 536 --DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D +TG+PNRQ  +  L  +     +       +  ID+ +  ++   +G+   + +L 
Sbjct: 165 FADPVTGLPNRQRLVRDLQLLAASGDSAPRRLVLIDCIDMPRAYELARSMGMGPVESLLR 224

Query: 594 SLTRRI--GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
            +   +         +    ++  RF ++   E++       A  +    A         
Sbjct: 225 DVATLLPLRLRPAPDEPFYTVATGRFAVLTRDESHMN-ADWVASRLEGISAD--LGDGIA 281

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKED 710
           + ++   G  ++    IT+ E L+ A  A++ A  RG      S    +  +    +  D
Sbjct: 282 VALSTHAGEVTFAKGSITAQEALRRAVSALHEAIGRGVPAMRFSAASDARYTQDFTLMND 341

Query: 711 LCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           L  A+     L+L + P I L     V LEALI+W HP  G +S + F+ +AE+  ++  
Sbjct: 342 LAAALREDSGLWLAFQPKICLHSGRPVALEALIRWHHPVRGELSPAVFVPMAEQTSLLSD 401

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++ +R+   +   R+      + + +N++S+D       + ++  + +     S + 
Sbjct: 402 LTAWITDRVISRLARLRNSCIQ--LPVTVNVSSQDFARENFADALEVKMRRAKLPTSLLG 459

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+  +     +   L  L+  G  ++LDDFGT  S +SYL  +P D +K + SL++
Sbjct: 460 IECLETERIIENPAAIHGLEMLKLRGFGISLDDFGTGYSNISYLRCMPLDVIKLDRSLIS 519

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             +       I RSII M K+++ T++A+ +        LT  GCD  Q    + PL  +
Sbjct: 520 EISSDTASRIIARSIITMLKDLDYTVLAEGVEDTETGTALTECGCDQAQGFFSSRPLPES 579

Query: 948 SILKLL 953
            +   L
Sbjct: 580 ELDGWL 585


>gi|167757038|ref|ZP_02429165.1| hypothetical protein CLORAM_02587 [Clostridium ramosum DSM 1402]
 gi|167703213|gb|EDS17792.1| hypothetical protein CLORAM_02587 [Clostridium ramosum DSM 1402]
          Length = 1855

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 167/445 (37%), Gaps = 25/445 (5%)

Query: 513  IGIAND----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            I +  D    IT               D  TG+ N     D     +    TD      +
Sbjct: 1422 IEVIADVICKITTIYNLQTKYTYALTHDQKTGLSN----YDSYIKTIRNINTDIYSTFGM 1477

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            + I I   KK N   GI  GD++L  + + I +         R+S   F ++        
Sbjct: 1478 IEITIINLKKYNQRYGIVQGDEILQFIAQTITKFFDKK-SCYRISNAHFIVLCPDITYEN 1536

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             I  +    ++ I         E      I    W  + +    M +     +       
Sbjct: 1537 FIHIYDTFYQELI---------EFYDQWIICEKVWEKNSLVLETMQEQ----LEEKTRHA 1583

Query: 689  GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             N     +++        I E L  A  N +      P       +I G EALI+++ P+
Sbjct: 1584 VNKKIHSKLAKSDQSIAKILERLNTAFVNGKFLTFLQPKAHTKTNQICGAEALIRYNDPQ 1643

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G I    F+   E   +I+ I+LF+L+ + R + +W       P  I IN +   +L+ 
Sbjct: 1644 KGIIPPGRFLPEIERAGLIRHIDLFILKDVCRILSNWLKTT-WKPFPISINYSRATILEP 1702

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             + E    ++         I++  +ES+   +    + ++ +    G  + LDDFG + S
Sbjct: 1703 GILEETNKIVESYNIPKELIEIEVTESIGSIDSASLKNIVNQFLAEGYKIALDDFGAEYS 1762

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             +  L  +   ++K +  +++      +   ++++II   + ++ T +A+ +  +  +K 
Sbjct: 1763 NIYILYSLHLSSLKLDRKIVSDIYHDHRAKLVIKNIINTCQQLDITCVAEGVETKEQLKV 1822

Query: 927  LTRMGCDYIQDSHVASPLGFNSILK 951
            L  + CD IQ  ++  PL  +   K
Sbjct: 1823 LKDLSCDVIQGYYLNKPLSEDDFKK 1847



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 107/259 (41%), Gaps = 6/259 (2%)

Query: 458  INDRDNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             +D+  F        ++ ++        +EFR +  +    W+ + ++   +   + +  
Sbjct: 920  EDDQKKFEKKYSKNQINDYIRTFTDIPTFEFRQKYLNGMILWVSLNMKTTISPQNNDVIL 979

Query: 513  IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                 +I  QK+    +   A  D ++ + N +S    +   L     D       +++D
Sbjct: 980  FIYTKNIDIQKRRELALQNKAEIDEMSSLYN-ESTSQLMIETLLKKEYDPKKVNAFLLLD 1038

Query: 573  IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            ID +K+IN       GD ++  + + I + +    I AR++G+ F I   +  +   I  
Sbjct: 1039 IDNFKQINHSGNFLFGDQIIRQMGQMIKKSISSSCIAARINGDTFSIFYHNAESKKVIYQ 1098

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A+ ++K ++   +  + E  +T + G     S  ++ S++ + A  A+  AK RG N +
Sbjct: 1099 AALQLQKKLSSIYHFQDIETQLTLTGGLIYLFSENMSYSQIHQCALHALDTAKRRGKNQI 1158

Query: 693  ESFRVSSFRSDRVMIKEDL 711
             S++          I+  +
Sbjct: 1159 LSYQEIEKVEFNFKIEMII 1177



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 9/188 (4%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  +        D+TEQ +        A  D LTGI NR +   R+  +L     +++  
Sbjct: 104 DNKLYHIQNSI-DVTEQLQLS----VEATIDELTGIFNRNAGKKRIEELLTAEYLNED-- 156

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V++ D++  K +ND  G   GD +L+ + + I + LK P+ + RLSG+ F I+ +   
Sbjct: 157 FVVVLYDMNGLKWVNDTYGHLEGDRLLIFVAQNIKKRLKEPNFIFRLSGDEFIIVFLD-T 215

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684
               +  +   +  ++         +   + S G A+    +  T S++L  A+  MY  
Sbjct: 216 TVKGVEVWMDNILLTLNQERIKENIDYDTSFSYGIANIHVDENLTVSDVLSIADSQMYIQ 275

Query: 685 KHRGGNHV 692
           K      +
Sbjct: 276 KRDYHILM 283



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLP-YIH 457
            ++ +        S D V+   ++     +        I G      H  + +     I+
Sbjct: 598 MNNEQELRFINENSLDGVFKAALIEHFPILYANDGYYRIHGYTKKQFHHDLNDCAENLIY 657

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D+   R  +   +   + +   E+R++  DN   W+ I     S  +  I+  IG+  
Sbjct: 658 ESDKARIRAQITDLIKNNQSQAILEYRIKKRDNSIAWIHISASFTSLLDQTII-MIGMVM 716

Query: 518 DITEQKKSLEG 528
           DIT++KK  + 
Sbjct: 717 DITKRKKLEDK 727



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 43/113 (38%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
               D ++  ++   +   +  +     L +  +      W   IH +D+  F       
Sbjct: 314 ETIDDYLFVGNLKTSKFMYSRQMMIDFRLPNQILDNAAAFWGEKIHPDDKAGFLRSNQEI 373

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              R  +    +R + A N++  ++ + + + + NG+   + G   ++ + ++
Sbjct: 374 ADGRAEQHTIYYRAKDASNRWIPLLCKGKMIRDKNGNPDLFAGTIRNLDKNRE 426



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 22/202 (10%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           +I     +      L   +++I +++  T              ++   +   +A   +G 
Sbjct: 691 SIAWIHISASFTSLLDQTIIMIGMVMDIT------KRKKLEDKLYRSQQLFKVAQTKTGL 744

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYR 475
            +W++DI   +V   PD A I    + + + P        IH    +  + +    +   
Sbjct: 745 NIWEFDIQNKQVIGNPDSAVIRSYQNLTANIPESIIAQGLIHPQSINELKNLYQR-LEKG 803

Query: 476 RGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              L    RV+  D  +++ W  I    + + +      IGI+ D+TEQK+         
Sbjct: 804 AAPLSATIRVKQKDAKDKYLWEKITYTIVQHIDEKPAWAIGISEDVTEQKEIE------- 856

Query: 534 FQDNLTGIPNRQSFLDRLTTIL 555
                T I N +S    L   +
Sbjct: 857 -----TRIYNEESLRKVLNEDI 873



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 3/103 (2%)

Query: 430 TTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
               I      +   +       +   I+  DR      +   +  R    +  +R+   
Sbjct: 506 FNQAILEYTQYSYEELCQITNGKFSNIIYEKDRQFVEREIFQQLE-RNDIYEIRYRIVCH 564

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                W+  R + + + +G  L  +    DI+ +  + + +  
Sbjct: 565 GGHLLWVYERGKYVIDGHGQKL-ILSFFVDISHEMNNEQELRF 606


>gi|126732341|ref|ZP_01748141.1| sensory box protein [Sagittula stellata E-37]
 gi|126707210|gb|EBA06276.1| sensory box protein [Sagittula stellata E-37]
          Length = 611

 Score =  288 bits (737), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 182/439 (41%), Gaps = 11/439 (2%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++    +      D LTG     +F   +   L  SA        +++ +++  + IND+
Sbjct: 166 QRRSARLEIQTRTDPLTGAQTLGAFEREVRKRLHDSAEA----CALILFEVENLRSINDL 221

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSI 641
            G   G+  L  +   +   L    I+ RL G++FG ++   E+ +  + D     R SI
Sbjct: 222 FGYQFGNTYLGLVAGALSAALPDTAIVGRLGGDQFGALVELPEHYNSYLGDVLSRCRDSI 281

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
                 L R      S G A + +       + + AE A++ +K         F      
Sbjct: 282 LRSTATLGRPNLGRTSGGAAVYPNDAANYDTLFELAEGALFVSKRSARGLPTVFAPGIDP 341

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R +   I      A+  +++   + P+  L+  E  G E L +W+ P+ G +   +F+ I
Sbjct: 342 RPNPREITRSFKAALAANQIRPYFQPVYNLLTGECAGFEVLARWEDPERGVLMPDDFIPI 401

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +    + +   +     + +           + I IN+ S DL++ E    +Q+ +S+
Sbjct: 402 LNDPENAERLTQKLTGTALKALADLGPHRAR-NLTIAINVTSFDLMNREFAFELQSHLSE 460

Query: 821 TL-YSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
               S S+I +  +E +++G  E +    L  LR+ G  + LDDFGT    L +L   P 
Sbjct: 461 VEWLSWSQIIIEVTEKIMLGAAEGQVFRTLEELRRRGARVALDDFGTGYGGLRHLSGWPV 520

Query: 879 DTVKFNGSLM-TGSTEK-RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +          AI+ SI+ ++++ + T+IA+ I     ++ L  M C   Q
Sbjct: 521 DILKIDRHFIGRMLDSDIDRAIVESILHLSEHSDLTVIAEGIETPAQLRALQSMNCAKGQ 580

Query: 937 DSHVASPLGFNSILKLLKE 955
               A+ L  + +   L+ 
Sbjct: 581 GHLFAAALPASGLADSLES 599


>gi|152998378|ref|YP_001343213.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Marinomonas sp. MWYL1]
 gi|150839302|gb|ABR73278.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Marinomonas sp. MWYL1]
          Length = 733

 Score =  288 bits (737), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 183/440 (41%), Gaps = 24/440 (5%)

Query: 529 ILCNAFQDNLTGIP---------NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
               A  + LT +          N+   +  +  +       +  + T++++ ++     
Sbjct: 303 FRNVALHNKLTELAYVEPTLGIHNKNWLVREIRNMFSW----EREKATLLMLYVEDLAYT 358

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
             VLG    D + +SL   +         +A L  +   +I+  + +  + +     +  
Sbjct: 359 ESVLGSKYCDQLTLSLYDYLNHFFDKTVDIALLERDTLVLIVYDDQDYNEAS-----LEN 413

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHAKHRG-GNHVESFRV 697
            I   I +     ++  ++    ++        +++   +  +  AK+        S  +
Sbjct: 414 IIHTSIKVENSLHSLDLTVSLVKFSDFPNYEPEQLVSVGKSTLERAKYESVSYLAFSETL 473

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           +S    R  + +DL  A+ ++++   + P   L D  ++G EAL +W H     I   +F
Sbjct: 474 ASEMFGRYELLKDLREAISDNQILAYFQPKFSLKDNTLIGFEALARWVHKNGQFIPPDQF 533

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I  ++  ML +  + I + ++     P  I +N+A  +++     E  + L
Sbjct: 534 IALAESSGLIDKLDQQMLRQSCKAINTLKNLGINVP--ISVNVAGNEIIRPNYFENFKRL 591

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +++   S   I+L  +ES ++         L  L+ +GI + +DDFGT  S L+YL  + 
Sbjct: 592 LAEEGVSNEMIELEITESQIIEEKININKHLSNLKTLGIRVNIDDFGTGYSSLAYLSTLS 651

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
             T+K + S +     +EK   IL+ II +   +  ++IA+ I  E     L  +GC+  
Sbjct: 652 VSTIKIDHSFVWRMEESEKDWEILKMIIELGNFLGLSVIAEGIETEQQKTHLLALGCEDG 711

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q    A P+  +  +  +K 
Sbjct: 712 QGYLFAKPMSLDDTISWIKA 731


>gi|78047658|ref|YP_363833.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036088|emb|CAJ23779.1| putative signal transduction protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 603

 Score =  288 bits (737), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 179/422 (42%), Gaps = 12/422 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L  +   +    ++      I++   +  N+    LG+   ++++   +
Sbjct: 180 GLLNTRQLQSDLDAL---AFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELVRHAS 236

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T 
Sbjct: 237 YVLTRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTF 295

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  ++++++   +A+  A +        S            +  D   A+
Sbjct: 296 HAGVVRFAPQQPDTNDVMRKGLVALGDAINNHAIVCWYSASHDDAIQRSYRLALDAEQAL 355

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  +  LV+ P I L D  + G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 356 KAGDFRLVFQPRINLEDLSVTGFEALLRWHHASLGPIGPDEFIPLFEKTALMCTVTNWVI 415

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E     +  WR Q       I IN++S+D  +  L   +           + I+L  +E 
Sbjct: 416 ESALVQLAEWRTQGLD--FSISINLSSRDFGNINLAADVINRCKDLAIPTTCIELEITEG 473

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K 
Sbjct: 474 RWLRSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIATKT 533

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+  + +   +
Sbjct: 534 GMQMRAEAVVRLANALGYRTVAEGIEHADEIALLRSWGCDEAQGYLLAKPMEAHLVADYV 593

Query: 954 KE 955
           K+
Sbjct: 594 KQ 595


>gi|56130730|ref|YP_145633.1| hypothetical protein pMOL30_102 [Ralstonia metallidurans CH34]
 gi|94152579|ref|YP_581986.1| diguanylate phosphodiesterase [Cupriavidus metallidurans CH34]
 gi|56068720|emb|CAI11282.1| hypothetical protein [Cupriavidus metallidurans CH34]
 gi|93358949|gb|ABF13036.1| Diguanylate phosphodiesterase (EAL domain) from Tn4380 (mer
           transposon ) [Cupriavidus metallidurans CH34]
          Length = 333

 Score =  288 bits (737), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 5/248 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  AVE  +L L Y P++ L    IVG EAL++W HP  G +   +F+ + E   ++  
Sbjct: 13  ELAQAVERGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPE 72

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R +  WR      P  + +N+++  +   +    ++ +++        ++
Sbjct: 73  IGAWVLGEACRQMRDWR-MLAWRPFRLAVNVSASQVG-PDFDGWVKGVLADAELPAEYLE 130

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + 
Sbjct: 131 IELTESVAFGDPAIF-PALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVA 189

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G     +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+   
Sbjct: 190 GLANDRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPAA 249

Query: 948 SILKLLKE 955
           +    + +
Sbjct: 250 AFAVFVSQ 257


>gi|260438098|ref|ZP_05791914.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Butyrivibrio crossotus DSM 2876]
 gi|292809579|gb|EFF68784.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Butyrivibrio crossotus DSM 2876]
          Length = 437

 Score =  288 bits (737), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 153/428 (35%), Gaps = 7/428 (1%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+P   SF+      L  +         ++  DI  +K IN + G +  +++L  L
Sbjct: 8   DTVTGLPIYDSFIGIAREEL--ANNFVPGHYVLIATDISNFKYINHIYGYSKANELLRDL 65

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              I   +       R   +    +     +            +      N     I + 
Sbjct: 66  IALISNSVDGNVSTCRTHSDHIISLFKYNGDKTAFCSRVDRYSRDFVKDNNRKYPSIMLH 125

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCL 713
            + G              +  A +A   AK         F       +     I      
Sbjct: 126 LNNGILFIDKYNDDLIYCIDKANVARRRAKGNYCVSSVIFSDDMMDKEEEDAKILAVFDT 185

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A++N  +   Y P I +   EI G E L +        +    ++ + E    +  ++ +
Sbjct: 186 AIKNGNIKTFYQPKINIRTHEINGAEVLSRIYDSNGKMLYPDTYIPVLENSGKVVELDRY 245

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++      +  W D      + + IN++     ++ + + +     +       ++L  +
Sbjct: 246 VMREAFASVRKWIDMGWKV-VPVSINLSRMHFYESNVADNIYNEFRRYNIPVEYVELELT 304

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES+   + +     + +LR  G  +++DDFG   S L+ LG +P D +KF+   ++ S  
Sbjct: 305 ESLFFADSDTIIREISKLRNYGFKVSMDDFGVGYSTLNTLGTLPVDIIKFDKGFISNSMN 364

Query: 894 KRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 IL+S+I + + I   +I + I  +   K +   GCD +Q      PL  +    
Sbjct: 365 NEAVYQILQSLIHVFRQINYDVICEGIETKEQEKLIFECGCDNVQGFLYDKPLERDIFED 424

Query: 952 LLKERFPL 959
              ++ P+
Sbjct: 425 KYLKKQPI 432


>gi|237735892|ref|ZP_04566373.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381637|gb|EEO31728.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 1855

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 167/445 (37%), Gaps = 25/445 (5%)

Query: 513  IGIAND----ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            I +  D    IT               D  TG+ N     D     +    TD      +
Sbjct: 1422 IEVIADVICKITTIYNLQTKYTYALTHDQKTGLSN----YDSYIKTIRNINTDIYSTFGM 1477

Query: 569  MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
            + I I   KK N   GI  GD++L  + + I +         R+S   F ++        
Sbjct: 1478 IEITIINLKKYNQRYGIVQGDEILQFIAQTITKFFDKK-SCYRISNAHFIVLCPDITYEN 1536

Query: 629  KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
             I  +    ++ I         E      I    W  + +    M +     +       
Sbjct: 1537 FIHIYDTFYQELI---------EFYDQWIICEKVWEKNSLVLETMQEQ----LEEKTRHA 1583

Query: 689  GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             N     +++        I E L  A  N +      P       +I G EALI+++ P+
Sbjct: 1584 VNKKIHSKLAKPDQSIAKILERLNTAFVNGKFLTFLQPKAHTKTNQICGAEALIRYNDPQ 1643

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
             G I    F+   E   +I+ I+LF+L+ + R + +W       P  I IN +   +L+ 
Sbjct: 1644 KGIIPPGRFLPEIERAGLIRHIDLFILKDVCRILSNWLKTT-WKPFPISINYSRATILEP 1702

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
             + E    ++         I++  +ES+   +    + ++ +    G  + LDDFG + S
Sbjct: 1703 GILEETNKIVESYNIPKELIEIEVTESIGSIDSASLKNIVNQFLAEGYKIALDDFGAEYS 1762

Query: 869  LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             +  L  +   ++K +  +++      +   ++++II   + ++ T +A+ +  +  +K 
Sbjct: 1763 NIYILYSLHLSSLKLDRKIVSDIYHDHRAKLVIKNIINTCQQLDITCVAEGVETKEQLKV 1822

Query: 927  LTRMGCDYIQDSHVASPLGFNSILK 951
            L  + CD IQ  ++  PL  +   K
Sbjct: 1823 LKDLSCDVIQGYYLNKPLSEDDFKK 1847



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 107/259 (41%), Gaps = 6/259 (2%)

Query: 458  INDRDNFRT-----ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
             +D+  F        ++ ++        +EFR +  +    W+ + ++   +   + +  
Sbjct: 920  EDDQKKFEKKYSKNQINDYIRTFTDIPTFEFRQKYLNGMILWVSLNMKTTISPQNNDVIL 979

Query: 513  IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                 +I  QK+    +   A  D ++ + N +S    +   L     D       +++D
Sbjct: 980  FIYTKNIDIQKRRELALQNKAEIDEMSSLYN-ESTSQLMIETLLKKEYDPKKVNAFLLLD 1038

Query: 573  IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
            ID +K+IN       GD ++  + + I + +    I AR++G+ F I   +  +   I  
Sbjct: 1039 IDNFKQINHSGNFLFGDQIIRQMGQMIKKSISSSCIAARINGDTFSIFYHNAESKKVIYQ 1098

Query: 633  FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
             A+ ++K ++   +  + E  +T + G     S  ++ S++ + A  A+  AK RG N +
Sbjct: 1099 AALQLQKKLSSIYHFQDIETQLTLTGGLIYLFSENMSYSQIHQCALHALDTAKRRGKNQI 1158

Query: 693  ESFRVSSFRSDRVMIKEDL 711
             S++          I+  +
Sbjct: 1159 LSYQEIEKVEFNFKIEMII 1177



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 9/188 (4%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +  +        D+TEQ +        A  D LTGI NR +   R+  +L     +++  
Sbjct: 104 DNKLYHIQNSI-DVTEQLQLS----VEATIDELTGIFNRNAGKKRIEELLTAEYLNED-- 156

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V++ D++  K +ND  G   GD +L+ + + I + LK P+ + RLSG+ F I+ +   
Sbjct: 157 FVVVLYDMNGLKWVNDTYGHLEGDRLLIFVAQNIKKRLKEPNFIFRLSGDEFIIVFLD-T 215

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI-TSSEMLKNAELAMYHA 684
               +  +   +  ++         +   + S G A+    +  T S++L  A+  MY  
Sbjct: 216 TVKGVEVWMDNILLTLNQERIKENIDYDTSFSYGIANIHVDENLTVSDVLSIADSQMYIQ 275

Query: 685 KHRGGNHV 692
           K      +
Sbjct: 276 KRDYHILM 283



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 401 FSDGERQSLAVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLP-YIH 457
            ++ +        S D V+   ++     +        I G      H  + +     I+
Sbjct: 598 MNNEQELRFINENSLDGVFKAALIEHFPILYANDGYYRIHGYTKKQFHHDLNDCAENLIY 657

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D+   R  +   +   + +   E+R++  DN   W+ I     S  +  I+  IG+  
Sbjct: 658 ESDKARIRAQITDLIKNNQSQAILEYRIKKRDNSIAWIHISASFTSLLDQTII-MIGMVM 716

Query: 518 DITEQKKSLEG 528
           DIT++KK  + 
Sbjct: 717 DITKRKKLEDK 727



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 43/113 (38%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
               D ++  ++   +   +  +     L +  +      W   IH +D+  F       
Sbjct: 314 ETIDDYLFVGNLKTSKFMYSRQMMIDFRLPNQILDNAAAFWGEKIHPDDKAGFLRSNQEI 373

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
              R  +    +R + A N++  ++ + + + + NG+   + G   ++ + ++
Sbjct: 374 ADGRAEQHTIYYRAKDASNRWIPLLCKGKMIRDKNGNPDLFAGTIRNLDKNRE 426



 Score = 60.3 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 22/202 (10%)

Query: 357 AITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGD 416
           +I     +      L   +++I +++  T              ++   +   +A   +G 
Sbjct: 691 SIAWIHISASFTSLLDQTIIMIGMVMDIT------KRKKLEDKLYRSQQLFKVAQTKTGL 744

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGYR 475
            +W++DI   +V   PD A I    + + + P        IH    +  + +    +   
Sbjct: 745 NIWEFDIQNKQVIGNPDSAIIRSYQNLTANIPESIIAQGLIHPQSINELKNLYQR-LEKG 803

Query: 476 RGRLQYEFRVRAAD--NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              L    RV+  D  +++ W  I    + + +      IGI+ D+TEQK+         
Sbjct: 804 AAPLSATIRVKQKDAKDKYLWEKITYTIVQHIDEKPAWAIGISEDVTEQKEIE------- 856

Query: 534 FQDNLTGIPNRQSFLDRLTTIL 555
                T I N +S    L   +
Sbjct: 857 -----TRIYNEESLRKVLNEDI 873



 Score = 48.4 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 3/103 (2%)

Query: 430 TTPDIATILGLASGSM-HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
               I      +   +       +   I+  DR      +   +  R    +  +R+   
Sbjct: 506 FNQAILEYTQYSYEELCQITNGKFSNIIYEKDRQFVEREIFQQLE-RNDIYEIRYRIVCH 564

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                W+  R + + + +G  L  +    DI+ +  + + +  
Sbjct: 565 GGHLLWVYERGKYVIDGHGQKL-ILSFFVDISHEMNNEQELRF 606


>gi|39936247|ref|NP_948523.1| putative cylclic diguanylate phosphodiesterase [Rhodopseudomonas
           palustris CGA009]
 gi|39650102|emb|CAE28625.1| putative cylclic diguanylate phosphodiesterase (EAL)
           [Rhodopseudomonas palustris CGA009]
          Length = 449

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 127/264 (48%), Gaps = 3/264 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +++  S R M+  ++  AV N +  L Y P I     ++VG EALI+W H K GN+  +E
Sbjct: 173 MNADLSVRRMMDVEMRKAVANGDFQLHYQPQINEA-GKVVGAEALIRWRHAKMGNVPPAE 231

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  I  ++L      +  W  Q     + + +N+++      +  + +  
Sbjct: 232 FIPLAEETGLIIPIGNWVLRAACAQLAQWEAQPEAQHLTMAVNVSASQFRQPDFVQSVSE 291

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++  +  +PS++KL  +ES+ + N + +   +  L+ IGI  +LDDFGT  S LS L   
Sbjct: 292 IVRLSGATPSKLKLELTESMFVDNIDATVAKMSALKAIGIIWSLDDFGTGYSSLSALNSF 351

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + + + G       + +  +II +A  +   +IA+ +     +  L   GC  
Sbjct: 352 PLGQIKIDKTFVHGMLTNVPNMVVTEAIIELAGKLNLQVIAEGVETVEQLNSLREAGCLN 411

Query: 935 IQDSHVASPLGFNSILKLLKERFP 958
            Q    + PL  ++  K L    P
Sbjct: 412 YQGYLFSPPLDIDAFSKFLSPEPP 435


>gi|119471535|ref|ZP_01613949.1| EAL domain protein [Alteromonadales bacterium TW-7]
 gi|119445478|gb|EAW26764.1| EAL domain protein [Alteromonadales bacterium TW-7]
          Length = 741

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 173/432 (40%), Gaps = 20/432 (4%)

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D    + NR      LT  +      +  +  ++V +++++++     G      +
Sbjct: 320 LAYTDVSLNMHNRNW----LTREIKNMNLHEQYQTRLLVFEVEQFEEKAFSFGHDFCQKL 375

Query: 592 LVSLTRRIGELLKFP-DILARLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINL 647
           L  + + +  +       +A ++ + FG+++       + +  +        +       
Sbjct: 376 LREVYKNLMTIFDGYSARIAIINNSSFGLLINVNFDITDEMIASLIRQKCIITSVKQYA- 434

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-M 706
             R + +  S              +++  AE ++  + +    +++  +  +        
Sbjct: 435 DLRILDLALSSVLNIVP------EKIISIAESSLSDSHNASLKYIKHTQEKTEALTNRYS 488

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +   L   +    L +   P + L     VG EAL +W       +S   F+ +AE   +
Sbjct: 489 LMARLRRVIGAGTLQVALQPKMDLATLTPVGFEALARWQLEDGSFVSPEVFIELAETAGL 548

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++  + ++I   I    D      + I  N ++ DL+D + C+ +   +      P 
Sbjct: 549 ISELDSVIFDKIISSIHKLSDIG--VNLPIAFNASAFDLVDPDYCKKILHKLKDANILPE 606

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +E+  + N +  R  L +   +GI +++DDFGT  S +S++  IP + +K +  
Sbjct: 607 MLELEITETQAISNYDLIRESLDKFMALGIKVSIDDFGTGYSSISHITEIPANILKIDRC 666

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +T          IL  I+ +AK  + +II + +      + + ++GCD  Q  + + PL
Sbjct: 667 FLTDIERNANNQYILEMIVNLAKRFDFSIIVEGVETLEQCEWVKKIGCDVAQGYYFSKPL 726

Query: 945 GFNSILKLLKER 956
            F  +   LK+ 
Sbjct: 727 FFKDLTTWLKQY 738


>gi|323497549|ref|ZP_08102566.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Vibrio sinaloensis DSM 21326]
 gi|323317298|gb|EGA70292.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Vibrio sinaloensis DSM 21326]
          Length = 537

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/554 (20%), Positives = 222/554 (40%), Gaps = 33/554 (5%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILD 469
           +          D   + +  +   A +  L+        +  + YI  N  +  F   + 
Sbjct: 8   IEAMHIAYIIIDERLEVLELSSQAAELFRLSKQ--RHLSQADVTYIDENFSELPFIDFVQ 65

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             V  ++   ++E  +   D    W+   +            +I    + +E   +    
Sbjct: 66  QAVTAKQDT-KFELGINYPDRNVEWLKASMIQYKG------YFILYFIEQSELIAARRLN 118

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              + QD  TG+  R++FL RL          +    TV  + I  Y++IND+ G AV +
Sbjct: 119 RQLSMQDPHTGLLYREAFLSRLNK--------EYKLGTVCCVRICNYQRINDIWGAAVAN 170

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            V + +  R+   L    I ++ S + F + +                   +  P +   
Sbjct: 171 LVFMEILARVSNEL-DQVICSKHSTDSFNVFIPPSTEFD-----VERFYCVLNEPFHFNG 224

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELA-MYHAKHRGGNHVESFRVSSFRSDRVMIK 708
           R+     ++G+           + L  AE+A +     R         ++     +  ++
Sbjct: 225 RQFFSNVALGY-YCEKEGDEHEQSLNKAEMAILDVLSERVRLAEFQEELAKQIEHQNNLE 283

Query: 709 EDLCLAVENSE---LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +   AV N E    Y+V+ P+     E++ G E LI+W   K   +S  EF+ IAE + 
Sbjct: 284 TEFRAAVSNGELADFYVVFQPVHDSETEQVCGAECLIRWTL-KGNFVSPVEFIPIAERIG 342

Query: 766 MIKAINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            I  +  F + ++ + +     Q      +   +NI+  ++LD E  + + ALI++    
Sbjct: 343 DIGILTQFNVVQLGKLVAELEQQGVDTLELLFALNISVVEILDVEFVDKLTALIAENQLY 402

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS+IKL  +ES ++ N      +L +L+++G  +++DDFGT  S LSYL  + FD +K +
Sbjct: 403 PSQIKLELTESALIDNFNYVNQVLQQLQQLGFRVSIDDFGTGFSSLSYLCRLSFDEIKID 462

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +T   E      +  SI  +A N+   ++A+ +     +        +YIQ  + + 
Sbjct: 463 RAFVTNVVEDSKLQTVFNSIASLATNMNKPVVAEGVETLEQLIYAKAKQVEYIQGYYFSQ 522

Query: 943 PLGFNSILKLLKER 956
           PL     +  L  R
Sbjct: 523 PLKHEDFVSYLLAR 536


>gi|2944145|gb|AAC38223.1| Urf2 [Pseudomonas stutzeri]
          Length = 329

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 5/248 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  AVE  +L L Y P++ L    IVG EAL++W HP  G +   +F+ + E   ++  
Sbjct: 13  ELAQAVERGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPE 72

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R +  WR      P  + +N ++  +   +    ++ +++        ++
Sbjct: 73  IGAWVLGEACRQMRDWR-MLAWRPFRLAVNASASQVG-PDFDGWVKGVLADAELPAEYLE 130

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + 
Sbjct: 131 IELTESVAFGDPAIF-PALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVA 189

Query: 890 GSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G  +  +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+   
Sbjct: 190 GLAKGRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPAA 249

Query: 948 SILKLLKE 955
           +    + +
Sbjct: 250 AFAVFVSQ 257


>gi|170721516|ref|YP_001749204.1| diguanylate phosphodiesterase [Pseudomonas putida W619]
 gi|1182007|emb|CAA77326.1| unnamed protein product [Pseudomonas aeruginosa]
 gi|169759519|gb|ACA72835.1| diguanylate phosphodiesterase [Pseudomonas putida W619]
          Length = 329

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 5/248 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  AVE  +L L Y P++ L    IVG EAL++W HP  G +   +F+ + E   ++  
Sbjct: 13  ELAQAVERGQLELHYQPVVDLRSGGIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLMPE 72

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  ++L    R +  WR      P  + +N ++  +   +    ++ +++        ++
Sbjct: 73  IGAWVLGEACRQMRDWR-MLAWRPFRLAVNASASQVG-PDFDGWVKGVLADAELPAEYLE 130

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + 
Sbjct: 131 IELTESVAFGDPAIF-PALDALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFVA 189

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G     +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+   
Sbjct: 190 GLANDRRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPAA 249

Query: 948 SILKLLKE 955
           +    + +
Sbjct: 250 AFAVFVSQ 257


>gi|325915346|ref|ZP_08177663.1| EAL domain-containing protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325538393|gb|EGD10072.1| EAL domain-containing protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 594

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 178/422 (42%), Gaps = 12/422 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L  +   +    ++      I++   +  N+    LG+   +++    +
Sbjct: 171 GLLNARQLQADLDAL---AFGSHSVPTIAAFIEVYDTQAANEARQALGMQPLEELTRHAS 227

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ +   ++ D  + +R  +  P++     +++T 
Sbjct: 228 CVLTRALRGKATVYHVASMRFAFFLLN-SAPDEMEDLLLDLRDMLHKPVDAAGVPMSLTF 286

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  ++++++   +++  A          S            +  D   A+
Sbjct: 287 HAGVVRFAPQQPDTNDVMRKGLVSLGDAISNNAVVCWYSASQDDAIQRSYRLALDAEKAL 346

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           +  +  LV+ P I L D  ++G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 347 DAGDFRLVFQPRINLQDLSVIGFEALLRWRHASLGPIGPDEFIPLFEKTALMCTVTNWVI 406

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           E     +  WR Q       I IN++S+D  +  L   +     +      RI+L  +E 
Sbjct: 407 ESALVQLSQWRAQGLD--FSISINLSSRDFGNINLAADVIKRCKELAIPTHRIELEITEG 464

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +   +   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG   K 
Sbjct: 465 RWLRSNVEAVPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIANKT 524

Query: 896 --IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
                  +++ MA  +    +A+ +    +I  L   GCD  Q   ++ P+    +   +
Sbjct: 525 GMQMRAEAVVRMASALGYRTVAEGVEHADEIALLRSWGCDEAQGYLLSRPMEAPLVAAYM 584

Query: 954 KE 955
           ++
Sbjct: 585 QD 586


>gi|325263952|ref|ZP_08130685.1| putative GGDEF domain/EAL domain protein [Clostridium sp. D5]
 gi|324030990|gb|EGB92272.1| putative GGDEF domain/EAL domain protein [Clostridium sp. D5]
          Length = 1001

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 207/558 (37%), Gaps = 33/558 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIV--WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
            S+ +     + +  +  +   +  ++ D+    +  T     I G     +     +  
Sbjct: 440 LSRDVIDSATKFTQILNKASIRIAGFEIDMNSKTLFMTDGFFHIFG--KEIVSARNMDVE 497

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
            +I           L+ +           +++   + +  ++ +    + +      R I
Sbjct: 498 SFI------REMKELEVYKEEEAEDYVL-YKMPYRE-KEIYIRLSYSSLEDK-----RVI 544

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI  DIT+  +  + I      D LTG+ NR++F  R+   L         +  ++++D+
Sbjct: 545 GIVEDITKTIQEKQLIEHERDHDLLTGLKNRRAF-QRIMQQLFEKGETCLKKAALVMMDL 603

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D  K+IND  G   GD  + +      +      I++R SG+ F I     +   +I   
Sbjct: 604 DNLKQINDKFGHDYGDKYIQAAADSFRKYTPSNTIISRNSGDEFYIFFYGYDTEEEITRI 663

Query: 634 AIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
              ++K I     L    + + +  S G + +        ++L+ ++ AMY  KH     
Sbjct: 664 LSGLKKGIDQEYILLPPMQRLKLKMSGGISWYPRDSRHYGQLLQYSDFAMYQVKHSTKGE 723

Query: 692 VESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
           +  F              + +L   +E  ++   + PI+     EI   EAL++   P  
Sbjct: 724 ISDFDLGAYHSEEYISQNRRELTELLEREKVEYYFQPIVDAHTGEIYAYEALMRGTMPT- 782

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISW-RDQANMPPIFILINIASKDLLDN 808
              + +E + +A E   +  +     +      +   R++   P   + IN  +   L N
Sbjct: 783 -LRNPAEILALAREEHKLDKVEELTWKMATSTFVQHVRNKRIKPDCKVFINSLADYRLSN 841

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLTLDDFGTKC 867
            + E +++                +E           + +L  + +      LDD+G+  
Sbjct: 842 RMIEFIESECKGY---LDHFVFEITEYAETDKEAMDVKRVL--VNRWNTDFALDDYGSGY 896

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           +    L  +    +K +  +++G      +  I+ + I  AK     +IA+ I  E ++ 
Sbjct: 897 NGERILIELAPKYIKIDREIISGIHLNIDKQKIVENTISYAKERNIKVIAEGIEMEQEMH 956

Query: 926 ELTRMGCDYIQDSHVASP 943
           +   +G DY+Q  ++A P
Sbjct: 957 KAMELGVDYMQGYYLARP 974


>gi|157144981|ref|YP_001452300.1| putative sensor protein [Citrobacter koseri ATCC BAA-895]
 gi|157082186|gb|ABV11864.1| hypothetical protein CKO_00712 [Citrobacter koseri ATCC BAA-895]
          Length = 1109

 Score =  287 bits (735), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 211/567 (37%), Gaps = 13/567 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ ++ + ER  + +   G+ V   D+  +     P    + G       G    
Sbjct: 542  EVKQLNEALYQEKERLHITLDSIGEAVVCIDVDMNVTFMNPVAEKMSGWQQEHAIGIPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             +  I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 602  TVLRITFGDNGPLMENIYSA-DMSRSAIEQDVVLHCRNGGRYDIHYSITPLSTLDGGNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF   L  IL L+  D      ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRVSFESHLKEIL-LTVRDTRQHHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELAALMLSMLRSSDMLARLGGDEFGLLLPDCN-IDSAR 778

Query: 632  DFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              +  +  +I        +RE  + AS G     ++   +++++  A++A Y +K+ G  
Sbjct: 779  FISTRIVNAINEYRFTWEDREHPIGASAGITLINNANRLAADVMSQADIACYASKNNGRG 838

Query: 691  HVESFRVSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             V  +     ++          E   +  +N  L +        + E        ++   
Sbjct: 839  RVTVYEAQQEQAHSEREVTSQDEQWRIIKDNPLLMIARGVASPRIPETCGFWLISLRLWT 898

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                 +    F     +  +  A++  + +   +   S         + I + +++  L 
Sbjct: 899  SDGEIMEEQAFRAGLTDPELSHALDRRVFQTFFQHAASTVASKG---VSIALPLSAAGLS 955

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                 + +   + ++   P  + L     V+M   +++   +  LR+ G  + L      
Sbjct: 956  RATFIDELLEQLERSPLPPRLLHLVIPAHVLMQESDKAIPAIQILRQAGCRIVLSQVNRD 1015

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
             +L   L     D +  +  L            ++  I   A+ +    IA  +   + +
Sbjct: 1016 LALFDCLSAHMADYLLLDSELCASLHGNLMDEMLVSIIQSHAQRLGVRTIAGPVQMPLIM 1075

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILK 951
              L+ +G D I    +A     + +L 
Sbjct: 1076 DALSGIGIDLIYGDVIADAQPLDLLLN 1102



 Score = 81.2 bits (199), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 24/194 (12%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +    +  +      ER +LA    G  +W+W++  D ++    +  +  +
Sbjct: 405 LYFIAQIEDINDLKHTERVNKRLMERITLANEAGGIGIWEWELRPDVISWDKRMFELYEV 464

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR     I+   +  R    + EFR+   D     +     
Sbjct: 465 PPH-IKPTWQLWHDCLLPEDRAPTEKIIRESLAARL-PFKLEFRIGVKDG-IRHIRALAN 521

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            + + +GD+ R +GI  D+TE K+  E +                   +RL   LD    
Sbjct: 522 RVLDKDGDVERLLGINMDMTEVKQLNEALYQE---------------KERLHITLDSIGE 566

Query: 561 DDNLRPTVMVIDID 574
                  V+ ID+D
Sbjct: 567 ------AVVCIDVD 574



 Score = 78.8 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 80/286 (27%), Gaps = 20/286 (6%)

Query: 252 IWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
           +    SE   + +L    ++F   YL       ++   T   +     L  +S  Y    
Sbjct: 157 LIWILSESIGALALVPLGLLFKPRYL-LRHRDPRLLLETLLTLTITLGLSWLSMLYVPWP 215

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
            +                ++        R    +     + +  + L             
Sbjct: 216 FTC------------IIVLLMWSAIRLPRMEAFLIFLATVMMTSLMLASDPALLSTPKTY 263

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRD 426
               V  L L++IL+   ++  V+      Q   ++ E R   A+  S   +        
Sbjct: 264 AMMNVPWLPLLMILLPVNIMTMVMYAFRAEQKNITESELRFRNAMEYSAIGMALVGTEGQ 323

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +     +   LG +   +      +       D  N    L+  V         E R  
Sbjct: 324 WLQANKALCQFLGYSQDEL--RALTFQQLTWPEDLHNDLEQLNMLVRGDINSYSMEKRYY 381

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             D    W ++ +  + +S+   L +I    DI + K +       
Sbjct: 382 TRDGDVVWALLAVSLVRHSDNTPLYFIAQIEDINDLKHTERVNKRL 427


>gi|258621857|ref|ZP_05716887.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585795|gb|EEW10514.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 246

 Score =  287 bits (735), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 123/247 (49%), Gaps = 4/247 (1%)

Query: 711 LCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +  A+   EL + + PII    + +++G EAL++W +P+ GNI   +F+ +AE    I  
Sbjct: 1   MLHALRLGELAVHFQPIIDLKQNGKVIGAEALLRWHNPQLGNIPPDQFIPLAESNGQIIE 60

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  F+L +  ++   W       P  I INI+     ++   E ++ L++     P  I+
Sbjct: 61  IGYFVLHQALKNASEWCKLT-TSPFKIAINISPIQFREHRFVEYLKDLMTLYQLPPGAIE 119

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E +++ +   ++  L +LR+ GIS++LDDFGT  S LSYL    FDT+K + S + 
Sbjct: 120 LELTEGILLQDEHYAQSALAQLRQQGISISLDDFGTGYSSLSYLQKYSFDTLKIDRSFIN 179

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                E+   + R+II MA  +   +IA+ +        +   GC++ Q       +  +
Sbjct: 180 QLEYNEQNRELTRAIIAMAHKLNMAVIAEGVEKTYQEDFVRTEGCNFAQGFLYGKAMPVD 239

Query: 948 SILKLLK 954
              KLL 
Sbjct: 240 EFTKLLT 246


>gi|238918958|ref|YP_002932472.1| PAS fold family [Edwardsiella ictaluri 93-146]
 gi|238868526|gb|ACR68237.1| PAS fold family [Edwardsiella ictaluri 93-146]
          Length = 1010

 Score =  287 bits (735), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 106/608 (17%), Positives = 212/608 (34%), Gaps = 10/608 (1%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQH-VLATGYFSQGIFSDGERQSLAVL 412
               I   L   +++P     L  +  +     I+H           +  + ER  + + 
Sbjct: 390 SGRIIWTLLTVSLVRPPQAEVLYFVAQMKEINDIKHNERQKQRLLDTLHQERERLHITLS 449

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
             G+ V   D  +      P    + G A     G     +  +  +       +L    
Sbjct: 450 AIGEAVISTDPQQIVRFMNPSAEKMTGWAQSRAIGRPLGQIVTLQDSVSGAALPVLRPAD 509

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               G      R+ +   Q + +  R+  + +S+G +L Y+ +  D++E +  L  +  +
Sbjct: 510 EGSGGAESDGVRLISRTGQRYEIQSRVAELRHSDGVMLGYVVVFQDVSETRTLLRQLSYS 569

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LTG+PNR SF   L   L  +         ++ +D+D +K IND +G A GD +L
Sbjct: 570 AQHDPLTGLPNRVSFEQALRRALRSAIDSPRHHV-LVFLDLDYFKAINDSVGHAAGDTLL 628

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            ++ + +  LL+  D LARL G+ F +IL   + +         + K  A          
Sbjct: 629 QNIAQMMRSLLRPQDTLARLGGDEFAMILNDCDIAQGKRMVEQLIHKIAAYRFYWQGGVY 688

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-----MI 707
            + AS G        + + E++  A+ A Y AK  G       +  + R           
Sbjct: 689 RIGASAGLTLLWHRNVLADEVINQADAACYMAKRSGRGLTFCHQGDTLRHPPHGVHEPDA 748

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +   L        L+     R    +I+      +   P    +S              
Sbjct: 749 AQLNALLAAQPITLLLRAVCPRSAPRQILFYLLDPEARRPDGSPLSPPALATACLRHQRQ 808

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + I  ++  +    +I         P+ + +++++  L        +   +  +     +
Sbjct: 809 QDIERWLFSQ---LLIRHAPALRQQPLALAVSLSTASLCQPTFVSWLCDTLRSSPLPARQ 865

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L   ES ++ +  ++   L  L   G  L  + F  +   ++ L + P + +  +   
Sbjct: 866 LLLRLEESALIEHQAQTAPALSALHHCGCRLIAEGFEHRLENIAGLEHSPVEYLLISSER 925

Query: 888 MTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           +  +      +L  +   A++     IA        +  L  +G D +  S V   L   
Sbjct: 926 VAHANHMDGIMLSRLHTQARSCGLQTIAGPAELPATLATLNLLGIDLLFGSSVHPTLTLP 985

Query: 948 SILKLLKE 955
            +L  L  
Sbjct: 986 RLLTYLDS 993



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 105/365 (28%), Gaps = 23/365 (6%)

Query: 168 PNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWV 227
              P ++   P+   D + +      +   +     +   + +            A+  +
Sbjct: 92  TYFPPLHYGLPHALIDQLQALLSALALRRCLHGSSPLGNLVQW------AYFILIAVLAI 145

Query: 228 VLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITF 287
            L   ++  G  + L          +   ++     +L           R    +  ++ 
Sbjct: 146 PLLCATLAAGLATLLHRDAFPGSAGFAFMADALGMLALTPLGL----LARPAGGLKRLSP 201

Query: 288 SGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILI 347
                I ++  +S YY +         +   +L       +  +        LI     +
Sbjct: 202 LKTILILLITLVSGYYALPLLPYPFTFILMPLL-------WAAVALPLWPAFLIFCCTAL 254

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +       A+          P L+   +L+V+L    +     A    SQ +  +  R 
Sbjct: 255 LLCAQMNSHAVAI----TSTPPLLLYIPILLVLLPAHAIAIQTHAYRRESQRLEENETRL 310

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +  S       D+    +   P +  +LG  +  +      +   I+  DR + +  
Sbjct: 311 RNVMEYSAIGTALIDLRGRWIQFNPALCRMLGYDAAIL--QRLRYRSLIYPPDRLSDKRQ 368

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +         E R      +  W ++ +  +     ++L ++    +I + K +  
Sbjct: 369 LADLLAGHIDSYTLEKRYVHRSGRIIWTLLTVSLVRPPQAEVLYFVAQMKEINDIKHNER 428

Query: 528 GILCN 532
                
Sbjct: 429 QKQRL 433


>gi|323152459|gb|EFZ38747.1| hypothetical protein ECEPECA14_5705 [Escherichia coli EPECa14]
          Length = 611

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 48  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 107

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 108 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 166

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 167 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 225

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 226 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 285

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V+AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 286 IATRIISAVNDYHFIWEGRVHRVSASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 345

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 346 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 405

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 406 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 462

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 463 ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 518

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 519 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 578

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 579 TLSGIGVDLIYGDVIADAQPLD 600



 Score = 42.2 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             R   + EFR+   D     +      + N  G++ R +GI  D+TE K+  E
Sbjct: 2   QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNE 54


>gi|254456969|ref|ZP_05070397.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207085761|gb|EDZ63045.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 594

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 183/435 (42%), Gaps = 33/435 (7%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+ +     +    + D+LTG+ +R      +  +           P +++IDID +  I
Sbjct: 164 TKVENRTRELEEKLYIDDLTGLKSRFRLDIDIVDV---------EFPVLILIDIDDFHSI 214

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISE--NNSLKIADFAIA 636
           N++ G  VGD+VL + +  + +  +     + R+SG++F +   SE  N+   + D    
Sbjct: 215 NELYGTNVGDEVLKNFSSLLKDYTQNKCYEVYRISGDQFVLFESSEFLNHEKILDDINEL 274

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            ++ +     L E+   V  SI       +     ++L  A++A+ +AK           
Sbjct: 275 FKQVLITKFPLKEKNEFVELSITVGIAIEN----EKILGKADMALSYAKKNNIKFSTYHL 330

Query: 697 V---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN-- 751
               S    +     + L   +++        PI+    + I   EAL++    +     
Sbjct: 331 NIDASKEIINTAKWFKILNRGLKDDLFIACLQPIVDREQKTIKH-EALMRLVSEEDSIDS 389

Query: 752 -ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             S   F+ IA +     AI+  ++++  + + +  +        + IN+A +D+ + EL
Sbjct: 390 HTSPEIFLPIAIQTKQYSAISYLVIKKAFKLLENRMED-------VSINLAYQDIKNREL 442

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              ++ ++S       RI     ES  +G+ E     +   + +G+ + +DDFGT  S  
Sbjct: 443 IHFLKKILSDKEI-AKRIIFEIVESEDIGDFEIVEDFIKTFKGLGVRIAIDDFGTGYSNF 501

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +++  +  D +K +GSL+      + +   +++I+  +K +    IA+ ++ +     + 
Sbjct: 502 THIMKLKPDYIKIDGSLIKNIDTDKDSFELVKAIVQFSKELNIKTIAEYVHNKEVFDIVF 561

Query: 929 RMGCDYIQDSHVASP 943
            +G D  Q  H   P
Sbjct: 562 NLGVDEFQGYHFGKP 576


>gi|261855807|ref|YP_003263090.1| diguanylate phosphodiesterase [Halothiobacillus neapolitanus c2]
 gi|309783296|ref|ZP_07678007.1| hypothetical protein HMPREF1004_04646 [Ralstonia sp. 5_7_47FAA]
 gi|261836276|gb|ACX96043.1| diguanylate phosphodiesterase [Halothiobacillus neapolitanus c2]
 gi|308917928|gb|EFP63614.1| hypothetical protein HMPREF1004_04646 [Ralstonia sp. 5_7_47FAA]
 gi|325528804|gb|EGD05856.1| diguanylate phosphodiesterase [Burkholderia sp. TJI49]
          Length = 333

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 5/240 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  AV   +L L Y PI+ L  ++IVG EAL++W HP  G +   +F+ + E   ++
Sbjct: 11  ATELAQAVVRGQLELHYQPIVDLRSDQIVGAEALLRWRHPTLGLLPPGQFLPVVESSGLM 70

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L    R +  WR  A   P  + +N+++  +        ++ +++        
Sbjct: 71  PEIGAWVLGAACRQMREWRKLA-WQPFRLAVNVSASQV-RPGFDGWVKDMLADAELPAES 128

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ESV  GNP      L  LR+IG+    DDFGT  S L +L   P  T+K + S 
Sbjct: 129 LEIELTESVAFGNPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSF 187

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G     +   I+RS+I +A  +   ++A+ +     +  L +  CD  Q    A P+ 
Sbjct: 188 VAGLVADHRDRTIVRSVIQLAHGLGMDVVAEGVETPTSLALLRQAECDTGQGFLFAKPMP 247


>gi|213418424|ref|ZP_03351490.1| putative phosphodiesterase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 420

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 175/401 (43%), Gaps = 14/401 (3%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            ++  E    NA +  ++ +PN+   +  L  ++    T       ++++  +  +    
Sbjct: 29  MQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTT-----ALIIVTCETLRDTAG 83

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
           VL     + +L++L  ++  +L    +L ++SG  F II                +   I
Sbjct: 84  VLQETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII 143

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
              + +   ++  + SIG A +    +T+  +   A  A + A+ +G N ++ F  +   
Sbjct: 144 NERLPIQGIQLRPSCSIGIAMYYGD-LTAEALYGRAVSAAFTARRKGKNQIQFFDPAQME 202

Query: 702 SDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
           + +  +  + D+  A++N +  +   P + +    ++  EAL++   P          + 
Sbjct: 203 AAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEGLIE 262

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             E   ++  +  ++LE   R + +W+++     + + +N+++  L+   +   +  L++
Sbjct: 263 RIESCGLMVTVGHWVLEESCRQLAAWQERG--VTLPLSVNLSALQLMHPGMVSDLLELLN 320

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY---I 876
           +    P  + L  +ES  + +P  +  +L  LR  G+ + LDDFG   + L  L +   +
Sbjct: 321 RYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSL 380

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917
           P D +K +   + G      +++ +II MA+++   +IA+ 
Sbjct: 381 PVDILKIDKMFVDGL-PDDHSMVTAIILMARSLNLQLIAEG 420


>gi|325277439|ref|ZP_08143049.1| diguanylate phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324097423|gb|EGB95659.1| diguanylate phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 593

 Score =  287 bits (734), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 96/428 (22%), Positives = 178/428 (41%), Gaps = 21/428 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDD 590
           F D  TG+ NR      +   L+          T++ +DI   +    I   LG     D
Sbjct: 167 FHDQATGLFNRLKLECDVVAGLER-----GKSLTLLAVDIMAAEALSDIIRGLGYNFAHD 221

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + +    RI   L     L ++S  RFG++L    ++  +      +  ++  P    + 
Sbjct: 222 LTLQAKARIASQLDNGLSLYKISPTRFGVLLE---DAADVQPLCERIVDALQAPAQCHQI 278

Query: 651 EITVTASIGFASWTSSKITSS--EMLKNAELAMYHAKHR-GGNHVESFRVSS-FRSDRVM 706
            + + A IG A  T         E ++ A  A   A+ R G +      V +  R   ++
Sbjct: 279 PVLLDAGIGIAPITQQCEDRDGMEWMRRAVAAADTARRRPGRHGWYEPDVDAAQRRAFLL 338

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +         + EL L   P I L        EAL++W HP  G+++ +EF+ +AE+  +
Sbjct: 339 LASLAQALQSDDELSLHLQPRIELPSGRCGSAEALLRWRHPLLGDVAPAEFIPLAEKTAL 398

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           + +++L+++    R +             +  N+ ++DL      + +   +      P 
Sbjct: 399 MASLSLWVMRAALRVLA----CTRDLDFSLSFNVTARDLESAGFMDALLHSLQAQAIEPQ 454

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R++L F+ESV++  PE     L R  + GI++ +DDFGT  S   YL  IP   VK + S
Sbjct: 455 RVQLEFTESVLIEQPEEVLQQLLRAHQAGIAIAIDDFGTGYSNWVYLTQIPASIVKLDRS 514

Query: 887 LMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+    S  +   +++S++ +A  +   + A+ I     + +    GC   Q   +A P+
Sbjct: 515 LVHRAASGTREALLVQSVVGLANELGYQVAAEGIETAEQLVQACAWGCVEAQGYFIARPM 574

Query: 945 GFNSILKL 952
                 + 
Sbjct: 575 PAAVFKEW 582


>gi|56460645|ref|YP_155926.1| signaling protein [Idiomarina loihiensis L2TR]
 gi|56179655|gb|AAV82377.1| Signaling protein [Idiomarina loihiensis L2TR]
          Length = 529

 Score =  287 bits (734), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 90/537 (16%), Positives = 206/537 (38%), Gaps = 39/537 (7%)

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
              +    +  +  +LG+           +  ++HI+ R++    ++             
Sbjct: 25  PDGNIRWMSESLHKLLGVH---YLKRTTAFSEFLHIDSRNDVTGEINQAAAN-GEVWNGR 80

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
             +  + N+  W      P+  ++G +   I +  DI+ +    E +L  A  D +T +P
Sbjct: 81  LCL-TSTNRRRWCRCIAIPLYETDGFLAEQILLFQDISREIHLDE-LLQEARFDQVTALP 138

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
            R   L+ L  +             + V+DI K++   D  G+  GD +L   +      
Sbjct: 139 TRIDLLNDLKQVGAQC---------LAVLDIRKFRSYADFYGLEFGDALLREFSDWASAF 189

Query: 603 LK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGF 660
           L+     + RL G++F +I              ++   +++   + +   ++T+  +IG 
Sbjct: 190 LRTKHINIYRLHGDKFALIPDFRMIPSLFERQLLSFYNALSLHKLKVENSDVTLDVAIGM 249

Query: 661 ASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
                  +   + L+ AE A+  AK  + G      +       ++V     +  A+ + 
Sbjct: 250 ------GVGRKKQLQLAESALSKAKAIYSGYKVEVVYERELLDENKVNWLPKIQSALVDH 303

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
                Y PI      +    EAL++        +    F+  A+       I   ++E+ 
Sbjct: 304 RFVNYYQPIQSTNKNQPSYYEALVRLRDNNKDLVP-GLFLDEAKTTRYYCEITRSVIEQA 362

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
                 ++       + I +N++ +D+L+ E    +  ++S+     +++    +E+   
Sbjct: 363 VLTSEQYQ-------VAISVNVSIEDILNEETVSFIHYVLSEHK--KAQLIFEITETEST 413

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
            +  + +     +R++G  + +DDFG   S  S L  +  D +K +GS++          
Sbjct: 414 EDFTKVQAFARDVRRLGGQIAIDDFGVGYSNFSRLISLRPDYLKIDGSIVQNVLHDPTSA 473

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +IL  +I + K +   I+A+ +  +     L     +Y+Q  ++  P     + +LL
Sbjct: 474 SILNGLISICKELHIPIVAEFVENKEVNSYLCDQQIEYLQGYYIGKPSP--EVNRLL 528


>gi|311278937|ref|YP_003941168.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Enterobacter cloacae SCF1]
 gi|308748132|gb|ADO47884.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Enterobacter cloacae SCF1]
          Length = 1107

 Score =  287 bits (734), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 202/567 (35%), Gaps = 23/567 (4%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+  +     P    + G            
Sbjct: 542  EVKKLNEALFQEKERLHITLDSIGEAVLCTDVDMNVTFMNPVAEKMSGWTQPEAIKQPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             +  I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 602  NVLRITFGDNGPLMENIHS-GDISRTDIEQDVVLHCRNGGKYDIHYSITPLSTLDGQNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF + L  +L            ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRVSFENNLKRLLQTVQETRQRHV-LVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L+  +   L+  DILARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDTAGHAAGDVLLRELSSLMLSQLRTSDILARLGGDEFGLLLPDCNIESARY 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            +   + AS G          SSE++  A++A Y +K+ G   
Sbjct: 780  ITTRIIDAINDYRFMWEGQVHRIGASAGITVIDEHNCQSSEVMSQADIACYASKNNGRGI 839

Query: 692  VESFRVSSF----RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +             + + E   +  +N  + +        + E        ++  + 
Sbjct: 840  VTVYEPQQEGLLPSRSMMTLDEQWRIIKDNHLVLMARGVASPRVPEASHFWLLSLRLWNS 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   +    F     E  +I A++  + +   RD  +         I + + +++  L  
Sbjct: 900  EGEMLEEQAFRKGLSEPELIHALDRRIYQAFFRDGAAEVAARG---ISVTLPLSAVGLAS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER----SRLLLGRLRKIGISLTLDDF 863
              L + +   + +    P  + L      +M          +  + RLR  G  + L   
Sbjct: 957  PTLVDELLEGLEQHAVPPRLLHL------IMHADSLPQAGVQDGIARLRAAGCKIILSHV 1010

Query: 864  GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGE 921
            G    L ++L     D V  +  +++          ++  +   A+ +    IA     +
Sbjct: 1011 GQDMDLFNHLTPGQVDYVMLDPEIISNVHVNLMDEMMVTIVQGHAQRLGMKTIA-GPTNQ 1069

Query: 922  I-DIKELTRMGCDYIQDSHVASPLGFN 947
               +  L+ +G D I    +A      
Sbjct: 1070 ALMMDTLSGIGVDLIYGDLIAHNQPIE 1096



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 82/281 (29%), Gaps = 14/281 (4%)

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
           +  +   +AL    ++F   YL  +R    +     +                +  +++A
Sbjct: 161 LSESVGALALVPLGLLFKSRYLQRHRNPMLLLETLLT------------LALTLAFSAMA 208

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
            + L     +    +++  ++        +     + +  +           +  +    
Sbjct: 209 MLWLPWPFTFVIVLLMWSAVRLPRLEAFTVFLSTAMMLSLMMAVNPSALMTPHVNLMGNA 268

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
                L+++L    +   + A     + I    ER   A+  S   +         +   
Sbjct: 269 PWLPFLLMLLPASVMTMVMYAFRAERKHISESEERFRNAMEYSAIGMALVGTEGQWLQVN 328

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +   LG +   +      +       D ++    L+  V         E R       
Sbjct: 329 KALCKFLGYSQNEL--RTMTFQQLTWPEDLNSDLEQLEQLVRGEINSYSMEKRYYTRKGD 386

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             W ++ +  + +++G  L +I    DI + K++       
Sbjct: 387 VVWALLAVSLVRHADGSPLYFIAQVEDINDLKQTEWVNKRL 427



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+W++  D ++    +  +  + S  M      W   +   D+++
Sbjct: 428 MERITLANEAGGIGIWEWELAPDIISWDKRMFELYEIPSH-MKPTWNLWYSCVLDEDKEH 486

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++ + + + R   + EFR+   D     +      + N  G++ R +GI  D+TE K
Sbjct: 487 AERVIRNAL-HARSPFKLEFRIHVKDG-IRHIRSLANRVLNKQGEVERLLGINMDMTEVK 544

Query: 524 KSLE 527
           K  E
Sbjct: 545 KLNE 548


>gi|261253275|ref|ZP_05945848.1| hypothetical protein VIA_003300 [Vibrio orientalis CIP 102891]
 gi|260936666|gb|EEX92655.1| hypothetical protein VIA_003300 [Vibrio orientalis CIP 102891]
          Length = 824

 Score =  287 bits (734), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 95/556 (17%), Positives = 217/556 (39%), Gaps = 40/556 (7%)

Query: 412 LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTILD 469
             +   V   D  R  +    +  ++ G A+  + G   + L      DR   NF T + 
Sbjct: 137 NNAHHGVLLIDAERSIIVCNDNFLSLSGYANSELKGQPFSSLQS----DRHSANFYTKIW 192

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             +  + G       + +A  + +   + I+ +    G  + Y+ +  D++     +E +
Sbjct: 193 CEI-GQSGHWSGVMLLESAQGRAYPQDVTIQRIMLEEG--IFYVAVLLDLSNNIYRIEDV 249

Query: 530 LC----NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
                       LT +P +  F   +  +   S  + + + T++V               
Sbjct: 250 EHGGVEL-----LTQLPTQTQF---IRAVTYRSQREGSEKVTMVV-------AFQPPFDH 294

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--ENNSLKIADFAIAMRKSIAM 643
               ++   L+  + +       +  L  N F   +         ++     A+R+  + 
Sbjct: 295 TEDFELKALLSEHLTK-EPQAVEVGYLGSNHFVACVECNKVKGPSQVRMIHQAIRRFFSS 353

Query: 644 PINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVS 698
               +  +I    +T  IG +           ++ ++  AM  +    RG        + 
Sbjct: 354 INQHVGTQIYNAIMTGRIGVSVLGQDTHDPKLLVAHSVQAMLEHSVTSRGQITFYHGVLH 413

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R  ++E     ++  ++ + Y PI+   + ++V  EAL ++  P    +++ E +
Sbjct: 414 KQVLRRKELEEWAEKTIKTKDVEVYYQPIVDTKNWDVVKFEALSRFKGPNGQMLNTQEMV 473

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQAL 817
            IAE+L ++  ++  + +R  +D+   +++     + + IN +    L  +E+     +L
Sbjct: 474 NIAEDLDLVSDLDWCVGQRALQDLNHIQERFGQH-LGVTINRSLNTKLDTDEVLASADSL 532

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K    P  + +  +ES    +  R   L+  +R+ G+ + +DDFGT  S  SYL    
Sbjct: 533 VHKYAKRPETVTIELTESAYFDSESRQSSLIRNIRRRGVQVAIDDFGTGYSSFSYLSDSN 592

Query: 878 FDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           FD +K +   +T       +  I++ I  +A  +   ++A+ +    +++ +  +G DYI
Sbjct: 593 FDVIKIDKEFVTNLMEGTNKYYIVKMITQLAHTLNVKVVAEGVETRNELEAVCSLGVDYI 652

Query: 936 QDSHVASPLGFNSILK 951
           Q  + + PL    + K
Sbjct: 653 QGYYFSKPLPLQDLEK 668


>gi|313681348|ref|YP_004059086.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313154208|gb|ADR32886.1| diguanylate cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 682

 Score =  287 bits (734), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 161/421 (38%), Gaps = 27/421 (6%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A  D LT + NR+++ + L             +  +++I+I+K+K  ND  G+  
Sbjct: 274 QSEREARIDPLTRLRNRKAYEEDLKR--------KGEKAALILININKFKHYNDFYGVKE 325

Query: 588 GDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           GD +L+     I  +          RL  + FGI+    + +   A     ++     PI
Sbjct: 326 GDRLLIETAHHIQNIPFAGYNPSYYRLGADDFGILFELFDYNDLHAISKTFLKTFSERPI 385

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DR 704
            +     T + SI  + ++        +L+ A++A+ +  H                 D 
Sbjct: 386 LIDNEPRTPSISISASKFSP-------LLETADMALKNKTHTNPTVYHQGLNLHQIIADN 438

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           V    +L  A+  + +   + PII L    +   E L +         S   ++ IA+E 
Sbjct: 439 VTKARELKDALAENRIVPYFQPIISLSTRSVTKHEVLARIIMKDDQARSIYPYLHIAKES 498

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   +   ++ +    I               IN++  D+ + E    ++ L+ +    
Sbjct: 499 NLYPQLTRAIVTQSFAIIAEHEGDF-------SINVSIDDIGNKETVALLEQLLEQYESI 551

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             RI     ES  +         + ++R+ G  + +DDFG+  S  S +  +  D +K +
Sbjct: 552 GKRIIFELLESEAIEEYNEIVEFIVKMRRYGCRIAIDDFGSGYSNFSRILNLAIDIIKID 611

Query: 885 GSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GSL+        A  I+++I+   KN     +A+ ++ E     + ++  D  Q  +   
Sbjct: 612 GSLIRNLDTDDKAITIVQTIVNFTKNSSIKTVAEFVHNEAIADIVEKLEIDSAQGFYFYE 671

Query: 943 P 943
           P
Sbjct: 672 P 672


>gi|95929481|ref|ZP_01312224.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134597|gb|EAT16253.1| diguanylate cyclase with PAS/PAC sensor [Desulfuromonas acetoxidans
           DSM 684]
          Length = 754

 Score =  287 bits (734), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 76/318 (23%), Positives = 139/318 (43%), Gaps = 3/318 (0%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I  V+      + +  + +R +  + G+    W+W++           A  LG     +
Sbjct: 432 RIGSVVQQKKAVEALAKERQRLAFILEGTHVGTWEWNVQTGETVFNSRWAENLGYQLDEL 491

Query: 446 H-GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MS 503
               I+ W  + H  D       L      R    Q E R++  +  + W++ R +  + 
Sbjct: 492 TPASIKTWERFCHPEDLKKAYRALKRHFSGRDPYYQCEIRLKHKNGHWVWILDRGKVSVW 551

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
            ++G  LR  G   DI+EQK++   I   A  D LTG+P+ +   DR+   L+ +    +
Sbjct: 552 TNDGAPLRMFGTHTDISEQKQAEARIRHLANHDALTGLPSLRLVRDRINVALESAHR-KH 610

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            +  VM  D+D +K IND  G   GD VL ++   +   ++  D +AR+ G+ F ++L  
Sbjct: 611 EQFAVMFFDLDGFKAINDQHGHDAGDFVLQTVANHLLNCVRKSDTVARIGGDEFLLLLTE 670

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +   + + A  + +++  P+      + V AS+G A + +   TS  ++K A+ AMY 
Sbjct: 671 IKSVDDVENIACKVIETVNQPMEFEGYLLQVQASVGIALYPTHGYTSKALIKQADSAMYT 730

Query: 684 AKHRGGNHVESFRVSSFR 701
            K  G N       S  +
Sbjct: 731 VKSSGKNGYRFAMPSQDK 748


>gi|317130396|ref|YP_004096678.1| diguanylate phosphodiesterase [Bacillus cellulosilyticus DSM 2522]
 gi|315475344|gb|ADU31947.1| diguanylate phosphodiesterase [Bacillus cellulosilyticus DSM 2522]
          Length = 692

 Score =  287 bits (734), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 127/247 (51%), Gaps = 3/247 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +++  A++ + + + Y P I     E+ G EAL++W+HP  G I  +EF+ +AEE  +I 
Sbjct: 287 KEIIDALDQNNMLIEYQPKIVAKTGELAGAEALVRWEHPTLGIIPPNEFIPVAEESGVIF 346

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++E I   +  W       P+ + INI+ + L  +     ++ ++ K   SPS I
Sbjct: 347 KLEEWVIENICVQMNKWTKSGYD-PMPVSINISPQHLCKDNFSNKVEEILKKFQVSPSLI 405

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  SE  ++ + +     +  L+K GI++TLDDFG   S L++L  +  D +K + SL+
Sbjct: 406 ELEISEDALIKDADTVNANIQHLKKQGITVTLDDFGQGVSSLTHLKSLELDHLKIDKSLI 465

Query: 889 TGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T  +    I+ S+I MA  +   +IA+ +  E  +  L    CD +Q    + P+  
Sbjct: 466 DNITTDKENGVIITSLIQMAHGLGVKVIAEGVENEEQLHALVEKNCDQVQGFLFSKPVKT 525

Query: 947 NSILKLL 953
           N   K+L
Sbjct: 526 NDFEKIL 532


>gi|253580550|ref|ZP_04857815.1| GGDEF/EAL/PAS-domain-containing protein [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848280|gb|EES76245.1| GGDEF/EAL/PAS-domain-containing protein [Ruminococcus sp.
           5_1_39BFAA]
          Length = 634

 Score =  287 bits (734), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 168/423 (39%), Gaps = 14/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D+ TG+ +++ F + +            +   V+ +++   K+IN V G + GD +LV
Sbjct: 219 YIDSTTGVFDKRYFDNWIQE-----KFTKGIEFHVIAVELFMLKQINQVYGSSTGDLLLV 273

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + R +   +     + R +GN F II  S     K       +      P      +IT
Sbjct: 274 QIARELQN-ITGSVQVFRTTGNCFLIITDSLTEYEKKRQ---EIENYFKEPFETDGEKIT 329

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDL 711
             A I              +L   E  +   K      V                ++  L
Sbjct: 330 FPAIICGIINGEKMEKEDVLLAYIEYLISLVKRADETVVIQSDDRILEGFRYEKEVEHFL 389

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AV+     + Y P+    ++  + LEAL +  HP  G I    F+ IAE   +I  I 
Sbjct: 390 KTAVDKDLFEVYYQPVFWTKEDRYITLEALSRLKHPCMGMIPPDVFIGIAERQGLIAQIG 449

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L    R+ R I             +  N++  +LL     + +  ++ +    P   +  
Sbjct: 450 LLQFRRVCRFIKENEYMMKQIK-NVKFNLSPSELLKPGHSQLLINIVKEHELLPKYFQFE 508

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+V     E     +      GI L LDDFG+  + L+ +  +PFD VK + SL+TG 
Sbjct: 509 ITETVATEYSESFCKAVEDFTNAGIGLCLDDFGSGYANLNAVLRLPFDVVKMDRSLLTGI 568

Query: 892 TEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           T    A +   SI+ + +N+  TI+A+    E ++  L   G D +Q  + + PL    +
Sbjct: 569 TCDEQAAVFYHSIVTVMQNMGYTIVAEGAETEEEVSLLREWGVDMVQGYYFSRPLPEAEL 628

Query: 950 LKL 952
           L+L
Sbjct: 629 LRL 631


>gi|302865767|ref|YP_003834404.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
 gi|302568626|gb|ADL44828.1| diguanylate cyclase [Micromonospora aurantiaca ATCC 27029]
          Length = 846

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 63/250 (25%), Positives = 122/250 (48%), Gaps = 4/250 (1%)

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A    E+ + Y P I +   E+VG+EAL++W HP+ G +   E + +AE+  +++ + 
Sbjct: 578 EQAGHPGEITMYYQPQIAIATGEVVGVEALLRWRHPRRGMVDPGELIQVAEQSAVMRLLT 637

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +++ +   +  W        +   +N++ +DL   E+ + +   +++    P R+++ 
Sbjct: 638 RRVVDDVVEQLAKWSAAGLT--LRAALNVSVRDLHTGEIADQIADRLTRYGVPPERLQVE 695

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E  +M +P R    + +L +IG+ + LDDFGT  S L +L  +P   VK + S + G 
Sbjct: 696 ITEGALMADPRRVLASITQLHRIGVGIALDDFGTGYSSLQHLRRLPLSEVKVDRSFVLGM 755

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  AI+RS I +A  +   ++A+ +  E   + L   GCD  Q    A P+    +
Sbjct: 756 ADDPDDAAIVRSTIELAGALGLRVVAEGVEDERTWRMLHAAGCDVAQGWFHARPMPAEDL 815

Query: 950 LKLLKERFPL 959
           +  L    P+
Sbjct: 816 VAWLSRYRPV 825



 Score =  145 bits (367), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 101/201 (50%), Gaps = 6/201 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL-----DLSATDDNLRPTVMVIDIDKYKK 578
           +        A  D LTG+PNR++ L  +   +       +    +    ++++D+D++K 
Sbjct: 235 RLSAEREQLADVDPLTGLPNRKALLTEVAEQVHLHGDRAARGAPDAHLALLLLDLDRFKH 294

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG AVGD +LV ++ R+   +   D++ARL G+ F I++    +  +  + A  + 
Sbjct: 295 VNDALGHAVGDRLLVEVSARLTGAVGAGDMVARLGGDEFAIVVPRLTDIDQARERADRVV 354

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
            ++A P+ L    + V  +IG A +       + ++++A++AMY AKHR     V +   
Sbjct: 355 AALAEPVPLDGLPLDVGGAIGIALYPDHGEDFATLMRHADVAMYDAKHRNDTVAVYAPES 414

Query: 698 SSFRSDRVMIKEDLCLAVENS 718
               ++R+ +  DL   +E+ 
Sbjct: 415 DHNSAERLSLLADLRRVLESG 435


>gi|254423213|ref|ZP_05036931.1| cyclic diguanylate phosphodiesterase (EAL) domain, putative
           [Synechococcus sp. PCC 7335]
 gi|196190702|gb|EDX85666.1| cyclic diguanylate phosphodiesterase (EAL) domain, putative
           [Synechococcus sp. PCC 7335]
          Length = 260

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           + N    + Y P +      + G EAL++W+HP  G IS + F+ IAEE  +I  +  ++
Sbjct: 1   MANPPFIVEYQPHLCFSTGYLSGFEALVRWEHPTHGRISPANFIPIAEETGLIIPLGAWV 60

Query: 775 LERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           L+     + SW+D       P+ I +N + K LL   +   +  ++ KT  + S ++L  
Sbjct: 61  LKTACCQLKSWQDTFPRFKSPLIIAVNFSGKQLLQPNIVGEVAHILKKTGLAASCLRLEI 120

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +ESV++ N   ++  L  L ++GI L +DDFGT  S L+ L     D +K + S +    
Sbjct: 121 TESVLINNLTVAKTRLKELSQLGIQLAIDDFGTGYSSLARLREFEVDVLKIDQSFIHQMQ 180

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             ++    +++II +  ++  +I A+ I     +  L ++GCD  Q    +  L  +   
Sbjct: 181 ALDENTEFIKAIIELGHSLNMSINAEGIETPSQLSNLKKLGCDEGQGLLFSRSLPPHPAE 240

Query: 951 KLLKE 955
           KL+ E
Sbjct: 241 KLIAE 245


>gi|310765804|gb|ADP10754.1| putative phosphodiesterase [Erwinia sp. Ejp617]
          Length = 664

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 192/431 (44%), Gaps = 11/431 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              + +   + +  LT +PN+  FL  L   L   ++       VMV+ I+   + N ++
Sbjct: 232 AMHDEMSRQSTRFTLTDLPNQTLFLAMLEQHLRAVSSTG--VFMVMVLRIETLLETNGLV 289

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
                + +L++L  +I   +    +LA+LS   F +++   NN  +    A  +   +  
Sbjct: 290 SDERRNALLLTLVSKIRSCIDERTVLAQLSVGDFALLIKRANNPFRALRLARNLMLKLNQ 349

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L   ++    SIG A    +  ++SE+L  A  AM  A+H+G N +  F V      
Sbjct: 350 PVLLQHMQLRPIVSIGIAQ-REAGFSASELLARAVSAMMSARHQGKNQILFFDVVLAERA 408

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+   +   +  L   P + +   ++VG EAL++            + +  A
Sbjct: 409 QKRLTQEHDILQGLAEEKFALWLQPQVDMRSGQLVGAEALLRMRQNDGSWSLPEDLIANA 468

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE+ +I  +  ++ E   R +  W+ +     + + +N+++  L +  +   +QALI + 
Sbjct: 469 EEIGVIGPLGRWVFEESCRILAHWQQRGCE--LTLSVNLSAIQLREAAMVTHLQALIQRY 526

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL---GYIPF 878
              P  + L  +E+  +G PE++ LLL  L+K G+++ LDDFG   + L++L     +P 
Sbjct: 527 GIRPGSLVLEITETAQIGEPEQALLLLQELQKTGVAVALDDFGMGYANLNWLNQFKTLPI 586

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
             +K + S +T        ++R I  +A+ +   +IA+ +  +     L   G  + Q  
Sbjct: 587 GKLKMDRSFVTVLPYDD-TMVRIIAAIAEIVTLDVIAEGVETDEQRARLLACGIHFGQGY 645

Query: 939 HVASPLGFNSI 949
             A  L     
Sbjct: 646 LYAGALPLTQF 656


>gi|255293107|dbj|BAH90200.1| Tn501 conserved hypothetical protein [uncultured bacterium]
          Length = 329

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 5/240 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  AV   +L L Y PI+ L  ++IVG EAL++W HP  G +   +F+ + E   ++
Sbjct: 11  ATELAHAVVRGQLELHYQPIVDLRSDQIVGAEALLRWRHPTLGMLPPGQFLPLVESSGLM 70

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L    R +  W    N  P  + +N+++  +   +    ++ +++        
Sbjct: 71  PEIGAWVLSEACRQMQRWLS-LNWQPFRLAVNVSASQVG-PDFDGWVKGVLADAELPTEY 128

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ESV  GNP      L  LR+IG+    DDFGT  S L +L   P  T+K + S 
Sbjct: 129 LEIELTESVAFGNPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSF 187

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G     +   I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A P+ 
Sbjct: 188 VAGLANDHRDQTIVHTVIQLAHGLGMDVVAEGVETSASLDLLRQANCDTGQGFLFAKPMP 247


>gi|229523801|ref|ZP_04413206.1| hypothetical protein VCA_001378 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337382|gb|EEO02399.1| hypothetical protein VCA_001378 [Vibrio cholerae bv. albensis
           VL426]
          Length = 818

 Score =  286 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 198/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  + ++     ++   L   
Sbjct: 657 LPLSHLIHASDYRKHLKLTNR 677


>gi|145593769|ref|YP_001158066.1| diguanylate cyclase [Salinispora tropica CNB-440]
 gi|145303106|gb|ABP53688.1| diguanylate cyclase/phosphodiesterase [Salinispora tropica CNB-440]
          Length = 803

 Score =  286 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 124/255 (48%), Gaps = 4/255 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L       E+ + Y P + +   E+VG+EAL++W HP+ G +   E + +AE+  +++ +
Sbjct: 539 LADPSGAGEITMYYQPQVAIATGEVVGVEALLRWRHPRRGMVDPEELIRVAEQSAVMRLL 598

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +++ +   +  W+       +   +N++ +DL   E+ + +   +++    P R++L
Sbjct: 599 TFRVVDDVVAQLARWQAAG--VVLRAALNVSVRDLHTGEIADRIAERLARHGVPPQRLQL 656

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  +M +P R    + RL ++G+ + LDDFGT  S L +L  +P   VK + S + G
Sbjct: 657 EITEGALMADPRRVLATITRLHRLGVGIALDDFGTGFSSLQHLRRLPLSEVKVDRSFVLG 716

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                   AI+ S++ +A+ +    +A+ +  E   + L  +GCD  Q    A P+    
Sbjct: 717 MTEDADDAAIVTSVVELARALGLRAVAEGVEDERTWRMLHAIGCDAAQGWFYARPMPAEE 776

Query: 949 ILKLLKERFPLVKNT 963
           ++  L    P+    
Sbjct: 777 LVAWLARHRPVRPTA 791



 Score =  133 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFL----DRLTTILDLSATDD-NLRPTVMVIDIDKYKK 578
           +        A  D LTG+ NR++ +    ++L    + +A      R  ++++D+D++K 
Sbjct: 229 RLSAEQEQLASLDPLTGLANRKALVAEVGEQLHRHAERAADGSVPARLALLLLDLDRFKH 288

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG AVGD +LV ++ R+ E+    D++ARL G+ F I+L    +  +  D A  + 
Sbjct: 289 VNDALGHAVGDRLLVEVSARLTEVAGA-DLVARLGGDEFAIVLTGLTDVAEARDRADRVV 347

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
            ++A P+ L    + V  SIG A +       + ++++A++AMY AK R     V     
Sbjct: 348 AALAEPVTLDGLPLDVGGSIGVALFPDHGEDFTTLMRHADVAMYDAKQRNDTVAVYVAES 407

Query: 698 SSFRSDRVMIKEDLCLAVENS 718
               ++R+ +  DL   + + 
Sbjct: 408 DHNSAERLGLLADLRRVLASG 428


>gi|126660494|ref|ZP_01731601.1| PAS:GGDEF [Cyanothece sp. CCY0110]
 gi|126618194|gb|EAZ88956.1| PAS:GGDEF [Cyanothece sp. CCY0110]
          Length = 638

 Score =  286 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/642 (19%), Positives = 259/642 (40%), Gaps = 81/642 (12%)

Query: 340 LIPAWILIFIWFIGLWMAITKR-LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
           L+ A   +F   IG +++          +  A++  L +I +      ++++  T     
Sbjct: 38  LLLAIAFVFSCGIGHFLSAFHYHFPYWHLVTAIISWLAVIALCKSQPQLRYLSQTFQLLD 97

Query: 399 GIFSDGERQSLAVLGSGDIVW-DWDIVRDRVTTTPDIATILGLASG---SMHGPIRNWLP 454
             ++           +G++++   D     +        I         S+      +L 
Sbjct: 98  ATWNK--------SMTGNLLFKRVDDDLKLLKINKIGQKIFNNQLEIGDSLVEKFPIFLD 149

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            I+       +  L +F      +++  +  +     F  +     P+S      L YI 
Sbjct: 150 VIYPQKTPLIQLYLQAFESGESQQIEIHYETQL-TGHFINIF---VPLSQE----LLYI- 200

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              DI+              +D LTG+ NR+ F                     + ID+D
Sbjct: 201 TFLDISPL-----------NRDVLTGLYNRRFFNLETRQW-----------QGCLYIDLD 238

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA-RLSGNRFGIILISENNSLKIADF 633
           ++K+IND  G  +GD +L+++   +    K  + +A R  G+ F ++         +   
Sbjct: 239 RFKRINDQRGHELGDKILIAVAETLQTYAKRYEGIAIREGGDEFILLFPII----DVYPI 294

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTS--SKITSSEMLKNAELAMYHAKH----- 686
           A+++ + I   + +   +++ +  I   +        +  ++ + +E A   AK      
Sbjct: 295 AVSILQDIQT-LEIEGAKVSASIGIATNNLPECEQDKSIYKLRQISETATREAKCDRRSE 353

Query: 687 --RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  + +  ++S  + +++I+  L      +E +LVY PI+ L   EIVG EALI+W
Sbjct: 354 LPENRIRLWTRELASQYARQMLIESYLRQPGIENERWLVYQPIVSLKTGEIVGAEALIRW 413

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
             P+ G IS  EF+ IAE L +   I+ ++L    + +  W      P  ++  N+++ +
Sbjct: 414 SSPELGMISPGEFIPIAEVLGLTYPISDWVLCEGLQQLGKWHS--INPNFWLSFNLSAAE 471

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D    + +   I +   +P  + L  +E V+  N +     L  L+K+ + L +DDFG
Sbjct: 472 LEDKTFIQKLYGRIVEANIAPHLVGLEITERVIYQNLDLYLQSLDWLKKMSVRLKVDDFG 531

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  + L  L    FD +K + S M G+    +++AI ++I  +A+ ++  ++A+ I    
Sbjct: 532 TGQAGLIQLLQFNFDEIKVDRSFMPGNKADTEKLAICKAIATIAQEMKFNLVAEGIETPQ 591

Query: 923 DIKELTRMGCDYIQDSH---------VASPLGFNSILKLLKE 955
             + ++                     A P+  +S+ K L+E
Sbjct: 592 QQEIVST---------LGYGYGQGYYFAKPMMADSLTKQLEE 624


>gi|15641714|ref|NP_231346.1| hypothetical protein VC1710 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|153817135|ref|ZP_01969802.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227081859|ref|YP_002810410.1| PAS/EAL family protein [Vibrio cholerae M66-2]
 gi|229508182|ref|ZP_04397687.1| hypothetical protein VCF_003416 [Vibrio cholerae BX 330286]
 gi|229511580|ref|ZP_04401059.1| hypothetical protein VCE_002989 [Vibrio cholerae B33]
 gi|229518719|ref|ZP_04408162.1| hypothetical protein VCC_002744 [Vibrio cholerae RC9]
 gi|229607755|ref|YP_002878403.1| hypothetical protein VCD_002669 [Vibrio cholerae MJ-1236]
 gi|254848828|ref|ZP_05238178.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|262161850|ref|ZP_06030868.1| hypothetical protein VIG_003020 [Vibrio cholerae INDRE 91/1]
 gi|298498212|ref|ZP_07008019.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656229|gb|AAF94860.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126512284|gb|EAZ74878.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|227009747|gb|ACP05959.1| PAS/EAL family protein [Vibrio cholerae M66-2]
 gi|229343408|gb|EEO08383.1| hypothetical protein VCC_002744 [Vibrio cholerae RC9]
 gi|229351545|gb|EEO16486.1| hypothetical protein VCE_002989 [Vibrio cholerae B33]
 gi|229355687|gb|EEO20608.1| hypothetical protein VCF_003416 [Vibrio cholerae BX 330286]
 gi|229370410|gb|ACQ60833.1| hypothetical protein VCD_002669 [Vibrio cholerae MJ-1236]
 gi|254844533|gb|EET22947.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|262028582|gb|EEY47237.1| hypothetical protein VIG_003020 [Vibrio cholerae INDRE 91/1]
 gi|297542545|gb|EFH78595.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 818

 Score =  286 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAE+L +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|254438362|ref|ZP_05051856.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
 gi|198253808|gb|EDY78122.1| cyclic diguanylate phosphodiesterase domain protein [Octadecabacter
           antarcticus 307]
          Length = 474

 Score =  286 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 185/411 (45%), Gaps = 9/411 (2%)

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L     +       M+++ID Y+++ +V G    +  L      I E L   D+   L G
Sbjct: 51  LSRFIDEIRHPTVAMIVEIDDYQQLEEVYGRESLESALTFTQCVIQEHLTEADVTIHLDG 110

Query: 615 NRFGIILISE--NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-SSKITSS 671
           +RF   L  +  +    + +    ++++++    + E  + +TASIGFA+     + T+ 
Sbjct: 111 SRFMSALAPQAPHEHEAMLNTCTRIQQALSNVPFMTELPVQLTASIGFAASNMLERPTAE 170

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIR 729
            +++ +  A+  A+ +  N V +F  +    ++    I +D   A E  E++  + P + 
Sbjct: 171 GLMRASFSALSEARRKAPNAVRAFSEAMLSRQASLQKITKDAKRAFEQGEIFAYFQPQLN 230

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQA 789
           L D  + G EAL +W HP+ G IS ++F+   E+  +++ +   M+++  + +  W    
Sbjct: 231 LDDGTLSGFEALTRWHHPERGIISPADFLPALEQAGLMQKLGDTMIKQALQALTFWDKSG 290

Query: 790 NMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLL 848
              P  I +N ++ +L +  L + +   +  +  +P R+ +   E+V+  +  +     L
Sbjct: 291 LNVP-QIGVNFSTIELRNPHLVDRIAMHLDVSNIAPHRLVIEVLETVIADDAGDDIIGNL 349

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMA 906
             L ++G  + LDDFGT  + ++ +       +K + S + G         ++ +I+ MA
Sbjct: 350 AALAELGCGIDLDDFGTGYASITNIRRFSVGRIKIDRSFVAGVDTDSEQRNMVAAILTMA 409

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             +    +A+ +    +   L  +GC  +Q   +A P+     ++     F
Sbjct: 410 DRLGVQTLAEGVETRGEKDALHALGCHDVQGFQIARPMPVQETVEWATAYF 460


>gi|257413389|ref|ZP_04742880.2| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
 gi|257203695|gb|EEV01980.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
          Length = 565

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 198/515 (38%), Gaps = 27/515 (5%)

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
            +  L ++H +DR  +   ++  +  ++   +   R++  D  +      +  +     +
Sbjct: 65  YQILLDHVHPDDRPEYLQAMEKRLLGQKLSDELYIRLKNKD-HYDMFGFFMSVVKEDGNE 123

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
            L +I +  ++  +             D LT +  ++ F   +   +         +  V
Sbjct: 124 YLLHILVNQNVIPEI------------DALTDLYGQKKFEKDVEGYIRT-----GRKVAV 166

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + ++ID    IN + G    D +   +      ++     +  ++ +    IL    + +
Sbjct: 167 LEVEIDHMADINILYGANYTDRLQREIAHHFIYMMDENKAVYHMNNSNCAFILRD-ADRV 225

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
               F   +RK++   I L  R   +          +    +  +    E  +  A+   
Sbjct: 226 DAGIFLEEVRKNLEKNITLNGRHFELKLYAAGLMLENYSGETMTVQSKLEYTLEKARSAR 285

Query: 689 GNHVESFRVSSFRSDRVMI--KEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQW 744
            + +  F      +  V +   + +  +V +     Y+ Y PI+     +I G EAL++W
Sbjct: 286 NHKLVFFNDIVKTNGGVNLDFMKIIHQSVLDGCDGFYVEYQPIVTSEGGKIAGAEALVRW 345

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
               +G +    F+   E+   +  +  ++L    ++   +      P  FI +N+++K 
Sbjct: 346 KKEPYGAVPPGLFIDWIEDNPCMYDLGNYVLAEALKNSAEFIK--INPDFFINVNVSAKQ 403

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L      + + +L+ +  Y P+ + L  +E       +     +  L++ GI   +DD+G
Sbjct: 404 LEQKSFRDVVLSLLKENDYPPNHLCLEITERCRQLPIDVINEEVCFLQQYGIHFAMDDYG 463

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  S +  +P + +K + S + G    EK+  ++++I+  A++       + +  + 
Sbjct: 464 TGNASSSIVLGVPMNEIKIDMSFIKGILNNEKQQMLVKNIVNFARSTNMKSCIEGVEDKS 523

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
               L   G  + Q  + + P+G   + KLL E  
Sbjct: 524 LQDYLRSFGATWFQGYYYSKPVGEEQLKKLLLEEM 558


>gi|153827983|ref|ZP_01980650.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876564|gb|EDL74699.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 818

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|159036756|ref|YP_001536009.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
 gi|157915591|gb|ABV97018.1| diguanylate cyclase/phosphodiesterase [Salinispora arenicola
           CNS-205]
          Length = 826

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 123/244 (50%), Gaps = 4/244 (1%)

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E+ + Y P + +   E+VG+EAL++W HP+ G +   E + +AE+  +++ +   +++ 
Sbjct: 569 GEITMYYQPQVAIATGEVVGVEALLRWRHPRRGMVDPEELIRVAEQSAVMRLLTFRVIDD 628

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           +   +  W+       +   +N++ +DL   E+ + +   +++    P  +++  +E  +
Sbjct: 629 VVAQLARWQAAG--VGLRAAMNVSVRDLHTGEIADRIAERLARYGVPPQLLQVEITEGAL 686

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           M +P R    + RL ++G+ + LDDFGT  S L +L  +P   VK + S + G       
Sbjct: 687 MADPRRVLATITRLHQLGVGIALDDFGTGFSSLQHLRRLPLSEVKVDRSFVLGMTEDADD 746

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            AI+ S++ +A+ +   ++A+ +  E   + L   GCD  Q    A P+  + ++  L  
Sbjct: 747 AAIVTSVVELARALGLRVVAEGVEDERTWRMLHATGCDAAQGWFYARPMPADELVAWLAR 806

Query: 956 RFPL 959
             P+
Sbjct: 807 HRPV 810



 Score =  137 bits (346), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 7/201 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT-----VMVIDIDKYKK 578
           +        A  D LTG+PNR++ +  +   L   A             ++++D+D++K 
Sbjct: 235 RLSVEQEQLASLDPLTGLPNRKALVAEVGEQLHRHAERAADGSAPARLALLLLDLDRFKH 294

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG AVGD +LV ++ R+ E++   D++ARL G+ F ++L    +  +    A  + 
Sbjct: 295 VNDALGHAVGDRLLVEVSARLTEVVGP-DLVARLGGDEFAVVLTGLTDVGEARRRADRVV 353

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRV 697
            ++A P+ L    + V  SIG A +       + ++++A++AMY AK R     V +   
Sbjct: 354 AALAEPVTLDGLPLDVGGSIGVALFPDHGEDFATLMRHADVAMYDAKQRNDTVAVYAAES 413

Query: 698 SSFRSDRVMIKEDLCLAVENS 718
               ++R+ +  DL   + + 
Sbjct: 414 DHNSAERLGLLADLRQVLASG 434


>gi|304311510|ref|YP_003811108.1| hypothetical protein HDN1F_18800 [gamma proteobacterium HdN1]
 gi|301797243|emb|CBL45463.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 692

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/581 (18%), Positives = 215/581 (37%), Gaps = 16/581 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + P+  G  +L+VI      ++           +    +R S  +  S D +  +     
Sbjct: 107 VVPSSEGERLLLVIQRELKNLKDRRQRRQLEISLKESEKRCSALLATSRDAI-TYVTDGM 165

Query: 427 RVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
              +      + G      + G     +  +     + F+  L ++        ++  R 
Sbjct: 166 HTYSNQAYLDLFGYEDPEELEGIPI--MDMVASEFHEAFKQFLRAYTSGENKTNEFSCRG 223

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              +N      +     +  +G+    I I  +     +  E +   + QD +TG+ NR 
Sbjct: 224 VTTNNDEIECSMVFSS-ATYDGEPCTQIMIRTN-KADAELQEKLREISSQDLITGLYNRS 281

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV--LGIAVGDDVLVSLTRRIGELL 603
            FL  L   L+ +   + +   ++ I ID +  I     +G+   D VL  +   + + +
Sbjct: 282 HFLSELEQSLEWAMAQNRV-GALLYIQIDNFTAIKSQPEIGVGGADIVLSDIASILRKEI 340

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
               ILAR   + F  +L        +                + ER + VTASIG    
Sbjct: 341 -PDTILARFDSDIFTALLRDVLLENALKIAENIRANIEHHLSEVNERTVRVTASIGVTVV 399

Query: 664 TSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           +     + E+L  A  A+  A  R   G                +   E L  A++    
Sbjct: 400 SEDAGNAHEILGRAATALERAHERSEHGNAIAVFDPAQERGEGDIDNVERLQQAIDRGMF 459

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
             ++ P+I L        E  ++        I+ +EF+  A    +   I+ +++ +   
Sbjct: 460 KTLFQPVIDLRGGGGELYEVFVRMVDEDGREIAPNEFLGAARINEIGTHIDRWVISQSIN 519

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +   R + +   +   IN+ +  L D  L   +Q  +++   S S + L FSE+ V   
Sbjct: 520 TLAFHRAKGHETRLI--INVTADSLRDETLASWLQEELNRVALSSSALILQFSETDVTTY 577

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAIL 899
             ++R    +++ +G  L++  FG   + ++ L ++  D +K +GS      T +    L
Sbjct: 578 LIQARNFSQQIKTLGCQLSISRFGCALNPMNTLKHVEIDFIKLDGSFTRDIGTPENREAL 637

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           + I+  A  +    IA  +     +  L ++G +YIQ  ++
Sbjct: 638 KEIVNEAHALGKLTIASFVESAGVLSALWQIGVNYIQGYYL 678


>gi|153825470|ref|ZP_01978137.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149740882|gb|EDM54967.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 818

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|327484313|gb|AEA78720.1| hypothetical protein VCLMA_A1497 [Vibrio cholerae LMA3894-4]
          Length = 818

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++I+     ++   L   
Sbjct: 657 LPLSNIIHASDYRKHLKLTNR 677


>gi|85711223|ref|ZP_01042283.1| Membrane-anchored signaling protein (PAS,GGDEF,EAL domains)
           [Idiomarina baltica OS145]
 gi|85695136|gb|EAQ33074.1| Membrane-anchored signaling protein (PAS,GGDEF,EAL domains)
           [Idiomarina baltica OS145]
          Length = 738

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/452 (20%), Positives = 193/452 (42%), Gaps = 12/452 (2%)

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G +        D++        +   A+   LTG+PN +     L   L+ +A ++ 
Sbjct: 291 DKQGSVRFV--TLIDLSAFILERRRLKQIAYLQPLTGLPNIEQLKLDLQNALETAADNE- 347

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               V+ I+I ++ K+N+  G+  GD VL  + +R  + L     L    G+ F ++L  
Sbjct: 348 -LVAVLNINIREFHKVNESYGVDDGDRVLQRVAQRFKQALPENAFLYCAWGDDFWVLLSG 406

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLERE-ITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               + + D    +  S+  PI + + + I  +A+IG  ++    +T++E+L  A  A+ 
Sbjct: 407 IKEYMALQDLMDNLMNSLNKPILIEQHKQIKASANIGACTYPLDGLTAAELLSYASSALQ 466

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            A+ +       F        +  +  K+ L  A+E S+  + Y P+      +  G EA
Sbjct: 467 RARRQTSACQVIFNQEMASDSQSQLLVKQQLHDAIEASQFEIYYQPMCD-SSLQAQGYEA 525

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++W+H + G I+++ F+ +  +    + +  + ++RI  D+ S           I +N+
Sbjct: 526 LLRWNHEEEGVIAAANFLPLC-DTVTKQKLGTWAIQRIIDDLPSIP-VNAEGKRNIAVNV 583

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
            ++ L D+     M     +   + +       E+ ++   +  R  L RL + G SL +
Sbjct: 584 FAEQL-DDAFVSDMVQFSHQLSETNTHFCFELKEASLIDPSDELRQTLSRLTEAGFSLII 642

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIY 919
           DDFG   + L+YL   P   +K     +     +R  AI+  I+ ++      + A  + 
Sbjct: 643 DDFGAGFAGLTYLREFPISAIKVEHDFIKKLDNERGYAIVDGIVELSHRAGIKVHALGVE 702

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            E  +K+   +  D  Q  ++      N ++ 
Sbjct: 703 SEQQLKQARALKFDLYQGRYIHPAKPLNELVD 734



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 15/187 (8%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIG--FTVIQHVLATGYFS 397
            + A+ +       + +++      D+    +    + + I+    F + Q + A+    
Sbjct: 21  WLAAYAITTAVITIVAISLFYLFPFDMQMLHMGILCLGLAIIAESAFFIWQALRASKATF 80

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRV---TTTPDIATILGLASGSMHGPIRNWLP 454
             +     +    +     I+++             + +I+ ILG            W  
Sbjct: 81  SALHPSLSQ----LDEGATIIYELHKQNGNFRPAYVSANISHILGYTVQEAL-SPNWWFD 135

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +H  DR    + +      +     + +R R+    + W+   +R  ++ +    +  G
Sbjct: 136 NVHPEDRALTLSAISKVEANKT--FVHRYRFRSKHGNYIWLRDELRTFNDDD---TKIAG 190

Query: 515 IANDITE 521
              D+++
Sbjct: 191 QWTDMSQ 197


>gi|158421932|ref|YP_001523224.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
 gi|158328821|dbj|BAF86306.1| putative diguanylate cyclase [Azorhizobium caulinodans ORS 571]
          Length = 566

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 115/555 (20%), Positives = 227/555 (40%), Gaps = 30/555 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           E+   A+     +V+ WD+  + V  + +    LG A     G    +  ++   D    
Sbjct: 27  EQTLQALQTLQCLVYRWDLTANTVHWSANSGEALGPALLEQLGRGTTFRAFLGCTDESTD 86

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQF--HWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                  +       +   R  A D       +  + R  + S+G   + +G      E 
Sbjct: 87  YHRFARALPLASMPYEALVR-PAIDGTPAAFRVHDQGRWRAGSDGQPEQAVGTL----EI 141

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
              L  ++     D LTG   R+     LT  L         R  ++++ +D   +IND 
Sbjct: 142 LPLLAPVIPGGTADPLTGALTRR----HLTEALGTLPFGPQARWALLLVGLDDLGRINDR 197

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G    D +LV+L  R+ + L   D+L R SGN+F I+L  E +   +  F   +   I 
Sbjct: 198 FGFETADRLLVALAGRLRQQLSSADLLLRFSGNKFAILLT-ETSVEALGAFGERLISEIR 256

Query: 643 M-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF----RV 697
              ++  E ++ V+ +IG             ++   + A   AK RG           R 
Sbjct: 257 EARLSAGEGQLPVSVTIGAILPPHQGEAPDAIIARLQEAHEMAKRRGRGRFFLDLQGTRN 316

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW-GNISSSE 756
              R   + + +++  A++ +++ + Y P++R     +V  EAL +  H ++    S   
Sbjct: 317 EGRRRANLQMADEIVQAIDRNDVTVAYQPVVRATTRTLVFCEALARIAHDRYSRQYSGHR 376

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
            +  A+ L ++  ++  ML+++A D+         P + + IN+++  ++D       + 
Sbjct: 377 LVAAADSLGLMGHLDRSMLKQVAADMRR------DPTLHVSINVSASSIMDEAWIALYRR 430

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +  T     R+ +  +ESV + +   +R  + ++R  G  + +DDFG   +    L  +
Sbjct: 431 EVD-TDI-GRRLIVELTESVAVDHLSAARNFIAQVRPSGARIAIDDFGAGATSFRNLRKL 488

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D VK +G  +     +    A +R+++ +++ +    +A+ +  EI   +L   GCDY
Sbjct: 489 GVDLVKIDGGYIINMAKSPDDQAFVRALLTLSRQLGIETVAEWVQNEIVAAQLLEWGCDY 548

Query: 935 IQDSH--VASPLGFN 947
            Q S   +A PL   
Sbjct: 549 FQGSLSGLARPLATE 563


>gi|254511933|ref|ZP_05124000.1| EAL domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221535644|gb|EEE38632.1| EAL domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 513

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 182/419 (43%), Gaps = 9/419 (2%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L+  A +       + + +D Y  +  + G A  + V +  T RI  +++  DI   +
Sbjct: 88  QGLNQMAENGGDNAACIAVALDDYADLQALHGQAAANHVRLQFTDRILAIIRNSDIFCEI 147

Query: 613 SGNRFGIILISEN--NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS-SKIT 669
             NRF + L      +       +  ++ ++  P+ L    + ++ SIGF   +   ++ 
Sbjct: 148 DQNRFLVGLHPSPHLDLEACIQMSGRLQSAVEEPVLLNGASVYLSCSIGFCLHSDLHEVE 207

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPI 727
           + + +  A  A+  A+  G + + ++   + R   V   + ++   A+++ E+   + P 
Sbjct: 208 AKDWISAATAALAEAQRSGPSTIRAYSTETRRRSLVRANLHKEFEAALDSGEIQPWFQPQ 267

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                  I G EAL +W+HP  G +S   F+  AE+  +++ +   +     + + +W  
Sbjct: 268 ESTDTGNITGFEALARWEHPIKGVLSPQVFLPFAEQAELMERLGQVIRHHAFQAMRAWDH 327

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR-L 846
                P  I IN +S +L +  L + ++  + +   +P+R+ +   E+V    P+     
Sbjct: 328 AGFAIP-RIGINFSSDELRNPGLIDRLKWELDQFDLTPNRLAVEVLETVFSRGPDDVITR 386

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIP 904
            +  +  +G  + LDDFGT  + ++ +       +K + + +        +  ++ +I+ 
Sbjct: 387 NVTGMAALGCCIDLDDFGTGHASIASIKRFDVSRIKIDRTFVAKADQDPNQQQLVSAILT 446

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           MA+ +    +A+ I    +   + ++G D++Q   +A P+ F   L  +      +K T
Sbjct: 447 MAERLNLETLAEGIETPGEHALMAQLGSDHVQGFGIAKPMPFEQTLDWIAAHRAKIKGT 505


>gi|172039564|ref|YP_001806065.1| hypothetical protein cce_4651 [Cyanothece sp. ATCC 51142]
 gi|171701018|gb|ACB53999.1| hypothetical protein cce_4651 [Cyanothece sp. ATCC 51142]
          Length = 278

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 141/261 (54%), Gaps = 7/261 (2%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +K  L  A++N E  L Y P I +   ++ G+EAL++W+HPK G IS  +F+ +AE+ 
Sbjct: 21  LKMKTALEQALDNEEFVLYYQPQINVETAKVSGVEALVRWNHPKLGLISPDKFIAVAEKT 80

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++  +  ++L+R  R    W++Q   PP+ I +N++   L D    + ++ ++ +T   
Sbjct: 81  DLMGRLGQWILKRACRQNQVWKNQGL-PPLIISVNLSLFQLQDPNFRDMVKEVLEETKLP 139

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            + ++L  +E++++ NPE     L  L ++G+ L+LDDFG+  S L+YL  +PF T+K  
Sbjct: 140 ATSLELEITEAIILANPEMVHQTLLNLTQLGVYLSLDDFGSGYSCLNYLSKLPFGTLKIA 199

Query: 885 GSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +   T+    I  +  I+ + K ++  ++A+ +  +  +  L  + C  +Q    + 
Sbjct: 200 QSCIKNLTKDYQNISLVSVILAVGKTLDIRVVAEGVETQQQLDILKNLHCPEMQGYFFSQ 259

Query: 943 PLGFNSILKLLKERFPLVKNT 963
           PL  + + +     F L +++
Sbjct: 260 PLTPDEVTQF----FALSQSS 276


>gi|311693135|gb|ADP96008.1| PAS sensor diguanylate cyclase and phosphodiesterase [marine
           bacterium HP15]
          Length = 814

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/581 (15%), Positives = 206/581 (35%), Gaps = 23/581 (3%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL----GL 440
             +    A     +         +     + D+V   D+  + +      A       G 
Sbjct: 229 GTLVDRTADMKLDRARQHANTMLAAVTSATSDLVVAVDLSFNLLHFNDAWARQFAETFGG 288

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              +          +   N+R     +        R     E  +     Q        +
Sbjct: 289 RPEAGDNLSDLLQEF--PNERRLMERLWHRAFE--RDNFVVEMPMAQQSRQLPVHEFHYQ 344

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            ++N  G+I   + +A  I  +             D +TG+ NR++F+ R+   L+    
Sbjct: 345 RLTNDQGEITGAVHVARRIEPRLNHASSEEYRIRHDPVTGLMNRKAFIARVLRTLEQKTR 404

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
            ++   +++ +D+D++++ ND+ G    D  L  L   +G  ++  D LARL+G+ F ++
Sbjct: 405 RESCD-SLLYLDLDEFERFNDLAGSGTCDRYLRELAGNLGVRVRQRDALARLAGDTFALL 463

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAEL 679
           + +   +         +        +     +  TAS G     +       ++L  A  
Sbjct: 464 IENCPEARARKIAQETLDLIGDFVFDWQGHSLQTTASGGLLILDNDVPADPEQLLGQAAD 523

Query: 680 AMYHAKHRGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYL---VYHPIIRLMDE 733
             + AK  G N V + +     +  S      E +  A++   L L      P+      
Sbjct: 524 LCHTAKTSGRNRVHAAKAVANQTDDSVASKRVEQIREALDKQSLILEYQAMRPVASPTWG 583

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           + + +   I         +   +F+ IAE   + K ++  ++ +    + +         
Sbjct: 584 DHIEILCRIPTTSDDEAILLPDDFLPIAERFDLAKRLDRQVIRQTLEWLGNQPLLEPRLK 643

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            +   N++   +LD+   + M   ++++ ++P    L   E+     P+   +L   L +
Sbjct: 644 -YCGFNLSLATVLDDTFSDFMADALNQSPFAPDCFCLEIREAHATQYPDDVAVLCDALHR 702

Query: 854 IGISLTLDDFGTKCS--LLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNI 909
            G  + LD  G   S    S    +P D +K +  ++    E   +  +L ++  +A+  
Sbjct: 703 AGFRVALD--GAGASVESYSLAARLPVDIIKLDRRMVQQLEEDPVQQVMLEALHRIAEAA 760

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
               +A  I  +  ++++  +G  Y Q   +  P   + + 
Sbjct: 761 GKVTVATFIESDDALRKVRTLGIHYGQGYRLCRPEPLDELT 801



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 22/232 (9%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           +   AT         D      A   +G  +W+ D   + +T T  +  +L L  G+   
Sbjct: 107 KAASATIALCDSSSRDSRLLRAAESSAGFGIWELDTRTNEMTWTEGMFQLLELRPGAEIT 166

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
           P +          +   R +    +            +  +      + +  R +    G
Sbjct: 167 PEQALFYC--QTGQARVRAMFRRCLRT-GDAFSLNLDIVTSQQNHRRVTLSCRALK-QGG 222

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
            I    G   D T   K  +    +A              L  +T+         +L   
Sbjct: 223 RITGLGGTLVDRTADMKL-DRARQHANT-----------MLAAVTSATSDLVVAVDLSFN 270

Query: 568 VMVIDIDKYKKINDVLG--IAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           ++  +    ++  +  G     GD++    +  + E      ++ RL    F
Sbjct: 271 LLHFNDAWARQFAETFGGRPEAGDNL----SDLLQEFPNERRLMERLWHRAF 318


>gi|254285349|ref|ZP_04960314.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150424621|gb|EDN16557.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 818

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|259910221|ref|YP_002650577.1| putative phosphodiesterase [Erwinia pyrifoliae Ep1/96]
 gi|224965843|emb|CAX57376.1| putative phosphodiesterase [Erwinia pyrifoliae Ep1/96]
 gi|283480331|emb|CAY76247.1| Protein yhjK [Erwinia pyrifoliae DSM 12163]
          Length = 664

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/431 (22%), Positives = 192/431 (44%), Gaps = 11/431 (2%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              + +   + +  LT +PN+  FL  L   L   ++       VMV+ I+   + N ++
Sbjct: 232 AMHDEMSRQSTRFTLTDLPNQTLFLAMLEQHLRAISSTG--VFMVMVLRIETLLETNGLV 289

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
                + +L++L  +I   +    +LA+LS   F +++   NN  +    A  +   +  
Sbjct: 290 TDERRNALLLTLVSKIRSCIDERTVLAQLSVGDFALLIKRANNPFRALRLARNLMLKLNQ 349

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P+ L   ++    SIG A    +  ++SE+L  A  AM  A+H+G N +  F V      
Sbjct: 350 PVLLQHMQLRPIVSIGIAQ-REAGFSASELLARAVSAMMSARHQGKNQILFFDVVLAERA 408

Query: 704 RVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  +  + D+   +   +  L   P + +   ++VG EAL++            + +  A
Sbjct: 409 QKRLTQEHDILQGLAEEKFALWLQPQVDMRSGQLVGAEALLRMRQNDGSWSLPEDLIANA 468

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE+ +I  +  ++ E   R +  W+ +     + + +N+++  L +  +   +QALI + 
Sbjct: 469 EEIGVIGPLGRWVFEESCRILAHWQQRGCE--LTLSVNLSAIQLREAAMVTHLQALIQRY 526

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL---GYIPF 878
              P  + L  +E+  +G PE++ LLL  L+K G+++ LDDFG   + L++L     +P 
Sbjct: 527 GIRPGSLVLEITETAQIGEPEQALLLLQELQKTGVAVALDDFGMGYANLNWLNQFKTLPI 586

Query: 879 DTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
             +K + S +T        ++R I  +A+ +   +IA+ +  +     L   G  + Q  
Sbjct: 587 GKLKMDRSFVTVLPYDD-TMVRIIAAIAEIVTLDVIAEGVETDEQRARLLACGIHFGQGY 645

Query: 939 HVASPLGFNSI 949
             A  L     
Sbjct: 646 LYAGALPLPQF 656


>gi|54296069|ref|YP_122438.1| hypothetical protein lpp0087 [Legionella pneumophila str. Paris]
 gi|53749854|emb|CAH11235.1| hypothetical protein lpp0087 [Legionella pneumophila str. Paris]
          Length = 537

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 205/444 (46%), Gaps = 23/444 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   +  D+LT +PN +   +++   ++           V+VI I+    +N   
Sbjct: 105 NLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGAQG--ELAVIVIKIND---LNYNF 159

Query: 584 GIAVGDDVLVSLTRRIGELLKFP---------DILARLSGNRFGIILISENNSLKIADFA 634
                ++++     ++  +L  P         +++ARL  + F I++      L I +  
Sbjct: 160 SSFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELL 219

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VE 693
           I +   +   + +    I VT+++G A +         ++ +A +A+Y A+    ++ + 
Sbjct: 220 IHLLTLLNNNLMVDGISINVTSTVGAAIYPVHGEEDDVLVNHAIIAVYQARKENKSYAIY 279

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           S  +        M+  +L  ++EN +L + Y PI+ L + +IVG E+  +++HP+ G +S
Sbjct: 280 SPEMEEDLIQNRMVMNELQRSIENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLS 339

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           + +FM + E   +I  +   ML+ + + + +W D  +   IF+ +N++       EL E 
Sbjct: 340 AEKFMPLIEGTNLIHNLTTLMLKEVIKQLAAWHDAGH--KIFVSVNLSVHH----ELPEL 393

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++    +P  +KL F+E   +     ++ +  RL  +GI L +DDF ++ S   +L
Sbjct: 394 IEKLLNDYEIAPQFLKLEFTERACLTEQMVTKEVFDRLSTMGIKLCIDDFCSENSSFIHL 453

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P + +K   S +       K+  I+ +I+ +A+ +    +A  I  +  +++L  +G
Sbjct: 454 TNFPIENIKIEKSFVLKIAKDAKKAKIVEAIVKLAQTLGWEPLADGIADQNALEKLRDLG 513

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C Y Q  + +  +       LLK+
Sbjct: 514 CLYGQGLYFSRAVNVAEFTSLLKK 537


>gi|121727920|ref|ZP_01680968.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|262169718|ref|ZP_06037409.1| hypothetical protein VIJ_002967 [Vibrio cholerae RC27]
 gi|121629770|gb|EAX62186.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|262021952|gb|EEY40662.1| hypothetical protein VIJ_002967 [Vibrio cholerae RC27]
          Length = 818

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKYQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|325681261|ref|ZP_08160791.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
 gi|324107183|gb|EGC01469.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
          Length = 640

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 170/419 (40%), Gaps = 13/419 (3%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           GI NR++    + T +            ++ + I   + I    G    D +   +   +
Sbjct: 232 GIYNRRALTADMNTYIV-----SGRNLYLLCVKITNTEIIKRATGSDNTDALSKLVAEYL 286

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             L+     +   S + F + L+  ++  K    A  + +    P  + + E  +   + 
Sbjct: 287 RTLV-PRYYVYSTSPDTFMVTLMD-SDEQKAVWLAGTISERFEQPWRIGDNEFPLKVMLM 344

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
            A       T ++ L  A+      K    N +    +      R  ++  +   +    
Sbjct: 345 AADVPERIHTVNDALYMADS--PVPKKLDKNILTGSDLDY-LLRRAAVESAVTKGLSEHF 401

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             + Y P   + ++ + G EALI+   P+ GN+   EF+ IAE++ +I  ++ ++L  + 
Sbjct: 402 FEVFYQPTYYVQEKRLHGAEALIRLHAPELGNLFPDEFIPIAEQIGLIDEVDDYVLREVC 461

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             I S   +       I +N++    +     + +  ++ +       I    +ES+   
Sbjct: 462 DFIRSGVPKKYGMDC-INVNLSVLQCMQPNFADHIADIVEEYGIDKHMINFEITESIAAS 520

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IA 897
           +      ++  L+K G   ++DD+GT  S +  +  + FD VK + S++  + + +    
Sbjct: 521 DYITLSRVVRTLKKQGFKFSMDDYGTGYSNMQSIFRLDFDIVKIDKSILWSAEKGQLGQI 580

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           IL S + M + +   I+ + +  E  ++ L  MG DY Q    + P+    +++LL+++
Sbjct: 581 ILDSSVRMIRQMRRKILVEGVETEYQLQILRDMGVDYAQGYLFSRPISKRDLIELLEKQ 639


>gi|332097255|gb|EGJ02238.1| hypothetical protein SB359474_1042 [Shigella boydii 3594-74]
          Length = 627

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 204/562 (36%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 64  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 123

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 124 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRNGGSYDVHYSITPLSTLDGSNIG 182

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 183 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 241

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 242 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 301

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 302 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 361

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 362 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 421

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 422 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 478

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR +G  + L   G   
Sbjct: 479 ATLVNDLLEQLGNSPLPPRLLHLIIPAEAILDHAESV----QKLRLVGCRIVLSQVGRDL 534

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 535 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 594

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 595 TLSGIGVDLIYGDVIADAQPLD 616



 Score = 51.1 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR +   ++   +   R   + EFR+   D     +      + N  G++ R +GI  
Sbjct: 3   PEDRQHAEKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINM 60

Query: 518 DITEQKKSLE 527
           D+TE K+  E
Sbjct: 61  DMTEVKQLNE 70


>gi|54293038|ref|YP_125453.1| hypothetical protein lpl0075 [Legionella pneumophila str. Lens]
 gi|53752870|emb|CAH14305.1| hypothetical protein lpl0075 [Legionella pneumophila str. Lens]
          Length = 537

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/444 (21%), Positives = 206/444 (46%), Gaps = 23/444 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   +  D+LT +PN +   +++   ++   +       V+VI I+    +N   
Sbjct: 105 NLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGSQGK--LAVIVIKIND---LNYNF 159

Query: 584 GIAVGDDVLVSLTRRIGELLKFP---------DILARLSGNRFGIILISENNSLKIADFA 634
                ++++     ++  +L  P         +++ARL  + F I++      L I +  
Sbjct: 160 SSFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELL 219

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VE 693
           I +   +   + +    I VT+++G A +         ++ +A +A+Y A+    ++ + 
Sbjct: 220 IHLLTLLNNNLMVDGISINVTSTVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIY 279

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           S  +        M+  +L  ++EN +L + Y PI+ L + +IVG E+  +++HP+ G +S
Sbjct: 280 SPEMEEDLIQNQMVMNELQRSIENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLS 339

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           + +FM + E   +I  +   ML+++ + + +W D  +   IF+ +N++       EL E 
Sbjct: 340 AEKFMPLIEGTNLIHNLTTLMLKQVIKQLAAWHDAGH--KIFVSVNLSVHH----ELPEL 393

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++    +P  +KL F+E   +     ++ +  RL  +GI L +DDF ++ S    L
Sbjct: 394 IEKLLNDYEIAPQFLKLEFTERACLTEQMVTKEVFDRLSAMGIKLWIDDFCSENSSFIQL 453

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P + +K   S +       K+  I+ +I+ +A+ +    +A  I  +  +++L  +G
Sbjct: 454 TNFPIENIKIEKSFVLKIAKDAKKAKIVEAIVKLAQTLGWEPLADGIADQNALEKLRDLG 513

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C Y Q  + +  +       LLK+
Sbjct: 514 CLYGQGLYFSRAVNVAEFTSLLKK 537


>gi|330949941|gb|EGH50201.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7]
          Length = 615

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/343 (28%), Positives = 177/343 (51%), Gaps = 6/343 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +T+  ++   +   A  D LT + NR+ F       L     +  +   VM +DID +K+
Sbjct: 276 LTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTFNKGM-LAVMFLDIDHFKR 334

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD++L  +  RI    +  D++AR  G+ F  IL+S  +  +    A  + 
Sbjct: 335 INDSLGHDAGDELLKVIAERIRSATRTQDVVARFGGDEF-CILLSIPDYEEARHLAHRVM 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV- 697
           + +   I L  R + +T SIG A +     T  E+LK+A+LA+Y +K +G N V  F   
Sbjct: 394 QKMKETIALAGRRMVMTTSIGIAVFPRDGETCDELLKHADLALYQSKDKGRNGVNFFNPA 453

Query: 698 -SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             +  S  + ++E+L  A+     L + Y PI+ +    +  LEAL++W+HP+ G +  +
Sbjct: 454 LKTKASLELQLEEELRNALREGTGLQVYYQPIVDMRTGHVAKLEALVRWNHPQHGLLVPA 513

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ IAE   +I  ++ ++L R   D+ +   +     + I +N ++  L  NEL E ++
Sbjct: 514 RFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGL-EKLIISVNCSALTLGRNELVEEVE 572

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
             ++    +P R++L  +E+ +MGN   + L+L  +R +G+SL
Sbjct: 573 RALADADAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSL 615


>gi|320183708|gb|EFW58546.1| putative sensor protein [Shigella flexneri CDC 796-83]
          Length = 627

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 204/562 (36%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 64  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 123

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 124 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRNGGSYDVHYSITPLSTLDGSNIG 182

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 183 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 241

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 242 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 301

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 302 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 361

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 362 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 421

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 422 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 478

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR +G  + L   G   
Sbjct: 479 ATLVNDLLEQLGNSPLPPRLLHLIIPAEAILDHAESV----QKLRLVGCRIVLSQVGRDL 534

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 535 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 594

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 595 TLSGIGVDLIYGDVIADAQPLD 616



 Score = 53.0 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             DR +   ++   +   R   + EFR+   D     +      + N  G++ R +GI  
Sbjct: 3   PEDRQHAEKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINM 60

Query: 518 DITEQKKSLE 527
           DITE K+  E
Sbjct: 61  DITEVKQLNE 70


>gi|206602084|gb|EDZ38566.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptospirillum sp. Group II '5-way CG']
          Length = 1139

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/619 (19%), Positives = 225/619 (36%), Gaps = 25/619 (4%)

Query: 349  IWFIGLWMAITKRLDN-DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
                   +    ++    I      G  +    +     I   ++  +      S    Q
Sbjct: 403  ATVSIPVLRGEGKIPWGTITITLPRGERISPEKIAILEKIGTRISLAFERHEELSQIRLQ 462

Query: 408  SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              A+      +       +           +      M G +  +L      D +  R I
Sbjct: 463  KSAMECIPVPMAITSAGGEIEWCNDAFQKRVSSNILRMIGNVPEFLVRGGERD-ELARQI 521

Query: 468  LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             ++           E R  A +         I  + N  GDI   I    DI+E+K+  +
Sbjct: 522  WNTL--NGGSFFSGEIRHAAKNGDVSITDTLITAIRNEKGDIRHLILTETDISEKKRLED 579

Query: 528  GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
             +   A+ D LTG+PNR      +   +  S         V  +D+D +K +ND LG A 
Sbjct: 580  ILKRQAWSDGLTGLPNRTHLEILMDEAIHRSRLSGKG-LAVCFLDLDGFKPVNDRLGHAF 638

Query: 588  GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            GD +L+ ++ R+   ++  D +ARL G+ F ++L   + +  I      + +SIA P   
Sbjct: 639  GDRILIEVSHRLQNAVRSGDTVARLGGDEFVLLLEEIDRNATIHQLLARILESIARPFEA 698

Query: 648  LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD---- 703
                +++TASIG   +      S  +L++A+ A+Y AK  G N    FR  + ++     
Sbjct: 699  PGTPLSLTASIGVTLYPEDLSPSDVLLRHADHALYQAKEDGRNRFVLFRPETAKTIVPED 758

Query: 704  -RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
              +     +    +   L L   P + L    I G+   +     +  +      +    
Sbjct: 759  GHLPEVFTVRSMQQKRALLL--DPELDLSSGRISGISIRL---DTRELDSPPDTSLDNLT 813

Query: 763  ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
                 +     +L +  R +     +       + I + ++ L +      +   +    
Sbjct: 814  RWSRYRDEQFSLLRQGLRILSDLEKEGFDQ--TLTIPVDARLLTEPGFLSTLDHTVQTMG 871

Query: 823  -YSPSRIKLSFSESV-VMGNPERSRLLLGRLRKIGISLTLDDFGTKCS--LLSYLGYIPF 878
              +PSR++L+  ES   M  P     +L R R+ G SL LDD  +  S   +  +   P 
Sbjct: 872  LLNPSRLELAL-ESTKTMDRPGDPAGILLRFRERGFSLCLDD-CSGQSLHAMEQIRTWPL 929

Query: 879  DTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
              ++ + SL    +E   A++   S++ +A+      +A  +     +  + R G  + Q
Sbjct: 930  SRIRIHPSLTRDISENDKALVIFDSLVHLAQAYGQNTLAAGVEDRDTLGLILRSGARFFQ 989

Query: 937  DSHVASPLGFNSILKLLKE 955
             S ++  L    +   LK 
Sbjct: 990  GSLLSPSLAPEQLQDSLKA 1008



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 19/204 (9%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVR-DRVTTTPDIA 435
           L+  ++    +   L  G  +Q      +R     L + D ++  D V    +   P  A
Sbjct: 139 LLSWVLSIATLSASLQGGAQAQPGKVSEDRYRRLFLHAPDGLFLVDPVSLKILEGNPIFA 198

Query: 436 TILG-LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR-VRAADNQFH 493
            + G      + G     L     +D       L          +Q + R +   D  F 
Sbjct: 199 DMTGDFFRELLPGSSLASLWNTTEDDLHRVVDRLKK----SGDPIQNQKRTLLRKDGTFL 254

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN--LTGIPNRQSFLDRL 551
                +  +    G+  R +    DIT + +        A  D   L G P        L
Sbjct: 255 HTSANLTLIPGPEGE--RLLVQVRDITARVEMEGLNEIFATLDQMLLAGAP--------L 304

Query: 552 TTILDLSATDDNLRPTVMVIDIDK 575
             +L           +   I   +
Sbjct: 305 EDLLSTLLRGIQKLFSFFSIHFCR 328


>gi|218512979|ref|ZP_03509819.1| putative sensory box/GGDEF family protein [Rhizobium etli 8C-3]
          Length = 377

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 163/379 (43%), Gaps = 13/379 (3%)

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAM 637
            ND  G   GD  L  +   +  +++    ++ R  G  F +++ +E  S+ ++      
Sbjct: 1   FNDRYGHQEGDRCLTVVANVLKAVVESSGGMIGRYGGEEFIVVMPAETPSIAMSLAEKIR 60

Query: 638 RKSIAMPINLLER---EITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVE 693
            +   + I   ER      VT SIG A            +++ A+LA+Y+AK  G N + 
Sbjct: 61  MEVEFLAIAHDERPDDSPIVTVSIGVAFTREDVGEKVERIVREADLALYNAKASGRNCIR 120

Query: 694 SFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            F  S  R D     +   L  A++   + LVY PI  L +E    +EAL++   P    
Sbjct: 121 RFDPSLPRPDDNAGKLVPLLTAAIDRKLVSLVYQPIFDLTNERAKAVEALMRLRMPDGTA 180

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +S   F+ +AE    I  +  + +E   RDI             + +N++   L      
Sbjct: 181 VSPRTFIPVAERTGAILELGKWAIETACRDI-----LMTDRMATVSVNVSPIQLRSPGFA 235

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             +  ++++   S SR+ L  +E + M         +  LR +G+ + LDDFG   + LS
Sbjct: 236 ASVGDILARCGVSGSRLALEVTEGLDMDMQSEVLKCVADLRALGVEIWLDDFGCGFAGLS 295

Query: 872 YLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +L  I F TVK + + +   S  + + +L+ +I + +N   TI+ + +     +  L  +
Sbjct: 296 WLRAIEFQTVKVDRTFLHDCSDPRGLTMLQDMISLIRNRGNTILVEGVETAAQLSLLKDL 355

Query: 931 GCDYIQDSHVASPLGFNSI 949
             D +Q  H+  P+    +
Sbjct: 356 RIDRVQGFHMGMPVSAERL 374


>gi|269138302|ref|YP_003295002.1| hypothetical protein ETAE_0946 [Edwardsiella tarda EIB202]
 gi|267983962|gb|ACY83791.1| hypothetical protein ETAE_0946 [Edwardsiella tarda EIB202]
          Length = 990

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/770 (15%), Positives = 249/770 (32%), Gaps = 31/770 (4%)

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLII 267
           + +      +           L   +   G    +       LL++     + L +  I 
Sbjct: 207 LLWAAVALPLWPAFLIFCCTALLLCAQMNGHAVAIAGESP--LLLYMPILLVLLPAHAIA 264

Query: 268 F-LFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
                Y   ++  A+      + +   AI   +             +             
Sbjct: 265 IQTHAYRRESQRLAENETRLRNVMEYSAIGTALIDLRGRWIQFNPALCRMLGYEAAILQH 324

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAI-------TKRLDNDIIQPALVGGLVLIV 379
           + +    Y    L     +   +        +       + R+   ++  +LV       
Sbjct: 325 LRYRSLIYPPDRLSDKRQLADLLAGHLDSYTLEKRYVHRSGRIIWTLLTVSLVRSPQAEA 384

Query: 380 ILIGFTVIQ------HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
           +     + +      +          +  + ER  + +   G+ V   D  +      P 
Sbjct: 385 LYFVAQMKEINDIKNNERQKQRLLDTLHQERERLHITLSAIGEAVISTDPQQIIRFMNPS 444

Query: 434 IATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              + G A     G     +  +  +      ++L        G      R+ +   Q +
Sbjct: 445 AEKMTGWAPTRAIGRPLEQIVTLQDSVSGAALSVLRPPNNEGDGGENDCLRLVSRSGQRY 504

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            +  R+  + +S+G ++ Y+ +  D++E +  L  +  +A  D LTG+PNR SF   L  
Sbjct: 505 EVQSRVAELRHSDGVLMGYVVVFQDVSETRTLLRQLSYSALHDPLTGLPNRVSFEQALRR 564

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            L  +         ++ +D+D +K IND  G A GD +L ++ + +  LL+  DILARL 
Sbjct: 565 ALRSAIESQRYHV-LVFLDLDYFKAINDSAGHAAGDVLLQNIAQMMRSLLRPQDILARLG 623

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           G+ F +IL   + +         + +  A           + AS G          + E 
Sbjct: 624 GDEFAMILSDCDIAQGKRMVDQLIHEIAAYRFYWQGGLYRIGASAGLTLLWHRNALADEA 683

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSS-------FRSDRVMIKEDLCLAVENSELYLVYHP 726
           +  A+ A Y AK  G       +                    +L  A   + L     P
Sbjct: 684 INQADAACYMAKRSGRGQAFCHQGDRLPSGSLGVHEPDAAQLSELLAAQRITLLLRAVCP 743

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
             R   ++I+      +   P     S+S            + +  ++  +    +I   
Sbjct: 744 --RSAPQQILFYLLDPEARRPDGSPFSASALATACLRYQRQQDVERWLFSQ---LLIRHA 798

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
              +  P+ + +++++  L        +   +  +     ++ L   ES ++ +  ++  
Sbjct: 799 RALSQQPLALAVSLSTASLCQPTFVSWLCDTLRSSPLPARQLLLRLEESALIEHQAQTAP 858

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIP 904
            L  L   G  L  + F  +   ++ L + P + +  +  L+  +        +L  +  
Sbjct: 859 ALSALHHCGCRLIAEGFERRLENIARLEHSPVEYLLASNELVAQAHANRMDEVMLSLLHT 918

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            A++     IA        +  L  +G D +  S V   L    +LK L 
Sbjct: 919 QARSCGLQTIAGPAELPATLATLNLLGIDLLFGSSVHPTLTLPQLLKQLS 968


>gi|327396683|dbj|BAK14104.1| diguanylate cyclase/phosphodiesterase [Pantoea ananatis AJ13355]
          Length = 552

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/401 (27%), Positives = 180/401 (44%), Gaps = 19/401 (4%)

Query: 417 IVWDWDIV-RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN-FRTILDSFVGY 474
            +   D+   D +   P    +  L      G  R  LP    ++    FR   D     
Sbjct: 161 ALILCDVASGDIIRANPTAMNLSCLQERVRSGNTRTALPAGLPDNLAAVFRQAFDLLPDQ 220

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
                     V + DN+  + +       NS G     +    D+T + ++       A 
Sbjct: 221 GFSET-----VSSGDNEPEFSLRISAERLNSGGGDDYLLYTILDVTAEYQAAVRANHLAL 275

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ NR+  +  L T+L     D +    VMV DID++K +NDVLG A GD +L+ 
Sbjct: 276 HDPLTGLLNRRGLMPELETLL-----DGDEPFAVMVSDIDRFKSVNDVLGHAAGDTLLIE 330

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           ++ R+  +L+  DILAR  G+ F  +L   +++   ++ A  +   +  P  L  R++T 
Sbjct: 331 VSARLLSVLRPGDILARTGGDEFVAVLPGISSAEDASETASRLTMVLKEPFMLKGRKVTS 390

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLC 712
             S G   +      +  ML  A++A+Y AK  G      F        ++R  ++ DL 
Sbjct: 391 GCSFGVCLFPGYARDAESMLSAADIALYAAKSAGRKGWVIFTDELASSAAERFSLENDLR 450

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+EN EL + Y P++  + EE+V  EAL++W+HP  GN+S   F+ +AE+  +I  I  
Sbjct: 451 GALENGELQIFYQPVVCSISEEVVSYEALLRWNHPVRGNVSPDVFIPLAEKTGLIHDIGA 510

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           F LER   D+  W          + +NI+ +   D +L + 
Sbjct: 511 FALERACNDMAEWSGHE-----RVAVNISPRQFRDPQLAKQ 546


>gi|153213881|ref|ZP_01949083.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124115619|gb|EAY34439.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 818

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/560 (16%), Positives = 197/560 (35%), Gaps = 34/560 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F  +L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSTQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLK--IADFAIAMRKSIAMPINLLEREI 652
           L   + +      +        F   L +E N     +      +R+          +E 
Sbjct: 300 LAASLAQN-WQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEA 358

Query: 653 TVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMI 707
                   +G +           ++ +A  AM  +HA      +     +      R  +
Sbjct: 359 HQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTL 418

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +I
Sbjct: 419 EKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGLI 478

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSPS 826
             ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T     
Sbjct: 479 NQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLAK 537

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K +  
Sbjct: 538 NITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDRE 597

Query: 887 LMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A PL
Sbjct: 598 FVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPL 657

Query: 945 GFNSILKL--LKERFPLVKN 962
             ++++     ++   L   
Sbjct: 658 PLSNLIHASDYRKHLKLTNR 677


>gi|71280261|ref|YP_268670.1| response regulator [Colwellia psychrerythraea 34H]
 gi|71146001|gb|AAZ26474.1| response regulator [Colwellia psychrerythraea 34H]
          Length = 397

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 128/247 (51%), Gaps = 4/247 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++DL  A++  +L L Y P I +  E + G E L++W HP++G I   +F+ +AE+  +I
Sbjct: 149 EQDLREAIDKKQLILYYQPQINMKTECLHGAEVLVRWLHPEFGLIYPDKFIALAEQTGLI 208

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + ++  ++    +  + W+         + INI+++++   +L E ++ L+ K    PS 
Sbjct: 209 EQLSEEVIHLAIKQSVHWQKLNRAT--RLSINISAQNITSLKLPEQLRMLVKKYEIDPSM 266

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I L  +ES +M +   S  +  R R  G  L++DDFGT  S LS L  IPF  +K + S 
Sbjct: 267 IVLELTESALMDSEVTSLDIFTRFRLKGFQLSIDDFGTGYSSLSQLHKIPFTELKIDQSF 326

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +T   +++   AI+ + I +A  +    +A+ I  +     L+  GCD  Q  ++A P+ 
Sbjct: 327 VTNMKQEKESMAIVETCIMLAHKLNMEAVAEGIEDKETWDLLSAEGCDIAQGYYIARPMP 386

Query: 946 FNSILKL 952
            +   K 
Sbjct: 387 ADQFDKW 393


>gi|307138724|ref|ZP_07498080.1| putative sensor protein [Escherichia coli H736]
 gi|331642684|ref|ZP_08343819.1| putative sensor-type protein [Escherichia coli H736]
 gi|331039482|gb|EGI11702.1| putative sensor-type protein [Escherichia coli H736]
          Length = 949

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 386 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 445

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 446 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 504

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 505 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 563

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 564 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 623

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 624 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 683

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 684 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 743

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 744 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 800

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 801 ATLVNDLLEQLDNSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 856

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L      K     ++  I   A+ +    IA  +   + + 
Sbjct: 857 QIFNSLKANMADYLLLDGELCANVQGKLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 916

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 917 TLSGIGVDLIYGDVIADAQPLD 938



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 107/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 33  RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 92

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H            
Sbjct: 93  MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAM 152

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 153 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 212

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 213 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 272

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 273 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 331

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 332 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 389

Query: 525 SLE 527
             E
Sbjct: 390 LNE 392



 Score = 85.0 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 85/281 (30%), Gaps = 14/281 (4%)

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
           +  +   +AL    ++F   YL     + ++ + +   +A    L  +S  Y        
Sbjct: 5   LSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWLSMLYLPW----- 58

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
                    +    +++  ++       LI    ++ +  +              +   +
Sbjct: 59  ------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHM 112

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
                L+++L    +   + A     + I         A+  S   +         + T 
Sbjct: 113 PWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTN 172

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +   LG +   + G    +       D +     ++  +         E R    +  
Sbjct: 173 KALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGD 230

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 231 VVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 271


>gi|300921728|ref|ZP_07137894.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|301329928|ref|ZP_07222649.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|300421866|gb|EFK05177.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300844027|gb|EFK71787.1| PAS domain S-box [Escherichia coli MS 78-1]
          Length = 897

 Score =  285 bits (730), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 334 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 393

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 394 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 452

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 453 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 511

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 512 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 571

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 572 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 631

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 632 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 691

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 692 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 748

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 749 ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 804

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 805 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 864

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 865 TLSGIGVDLIYGDVIADAQPLD 886



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q      ER +LA    G  +W+W++  +  +    +  +  +
Sbjct: 197 LYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEI 256

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 257 PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALAN 313

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 314 RVLNKEGEVERLLGINMDMTEVKQLNE 340



 Score = 86.9 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 65/215 (30%), Gaps = 2/215 (0%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
              +    +++  ++       LI    ++ +  +              +   +     L
Sbjct: 7   PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFL 66

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +++L    +   + A     + I     R   A+  S   +         + T   +   
Sbjct: 67  LILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQTNKALCQF 126

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG +   + G    +       D +     ++  +         E R    +    W ++
Sbjct: 127 LGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALL 184

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  + +++G  L +I    DI E K++ +     
Sbjct: 185 AVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 219


>gi|167946539|ref|ZP_02533613.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 457

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/329 (28%), Positives = 157/329 (47%), Gaps = 9/329 (2%)

Query: 404 GERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
             R  LA      + D +   D     +T  P  + I G +   + G     L       
Sbjct: 133 KRRLRLATTVFDNTHDGILVTDEKGTILTVNPAFSEITGYSEAEVRGQNPRLLRSGKQ-- 190

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
           R +F   + S +  R GR Q E R R  D       + I  + +  G++  Y+GI +DI+
Sbjct: 191 RADFYEAMWSTIRQR-GRWQGEIRNRNRDGDIFPAWLTISSVKDDQGEVTNYVGIFSDIS 249

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
             K SLE I   A  D LTG+PNR  FLDRL   +  +    +    V+ +DID++K IN
Sbjct: 250 PLKHSLEQIEHLANHDPLTGLPNRLLFLDRLKVAVRQARRGGHA-LAVLFLDIDRFKDIN 308

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D LG A+GD +L+ +  R+   ++  D +ARL G+ F I++    ++ +    A  + + 
Sbjct: 309 DSLGHAMGDQLLLEMAARVRGQVREEDTVARLGGDEFVILIGDVESASEAELVARKVMQG 368

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           + +PI L   EI +  S+G + + +   ++ E++++A++AMYHAK RG +    +     
Sbjct: 369 LEVPIRLETSEIILRVSMGISLYPNDGESADELIRHADIAMYHAKERGLSEYHFYNDEMS 428

Query: 701 R--SDRVMIKEDLCLAVENSELYLVYHPI 727
                R+ ++  L  A+E  E  L Y P 
Sbjct: 429 AGTRARLAMESALRRAIEGQEFELYYQPQ 457



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           +R +  +  +   ++  D              +LG +   + G   +    +H    D  
Sbjct: 11  QRFAAILDATTVGLFGLDRDGRVTFVNGAACRLLGHSEEGLLGGTHH--DRVHYAKSDGS 68

Query: 465 RTILDSFVGYRRGR----LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              L     ++  +    +  E      D +   +     P+ +  G++   +    DI+
Sbjct: 69  TYPLSECPIHQSLQTGKIVHGEELFFHRDGRGIAVEFTCSPLVDG-GEVEGVVVTFQDIS 127

Query: 521 EQKKSLEGILCNAFQ 535
           E+K +++  L  A  
Sbjct: 128 ERK-AVKRRLRLATT 141


>gi|291085171|ref|ZP_06570963.1| putative sensor-type protein [Citrobacter youngae ATCC 29220]
 gi|291072175|gb|EFE10284.1| putative sensor-type protein [Citrobacter youngae ATCC 29220]
          Length = 1091

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/566 (18%), Positives = 212/566 (37%), Gaps = 11/566 (1%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ ++ + ER  + +   G+ V   D+  +     P    + G    S  G    
Sbjct: 524  EVKQLNEALYQEKERLHITLDSIGEAVICIDVEMNVTFMNPVAEKMSGWQQESAIGIPLL 583

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             +  I   D       + S     R  ++ E  +   +   + +   I P+S  +G  + 
Sbjct: 584  TVLRITFGDNGPLMENIYSA-DMSRTAIEQEVVLHCRNGNSYDIQYSITPLSTLDGGSIG 642

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D+LT + NR SF + L  +L            ++ I
Sbjct: 643  SVLVIQDVTESRKMLRQLSYSASHDDLTQLANRVSFENHLKQLLHTVHETHQRHV-LVFI 701

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L+  +  +L+  D+LARL G+ FG++L   N      
Sbjct: 702  DLDRFKAVNDSAGHAAGDALLRELSSLMLSMLRSSDMLARLGGDEFGLLLPDCNIESARF 761

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +                + AS G          +S+++  A++A Y AK+ G   
Sbjct: 762  ISGRIINAINDYHFMWEGHPHRIGASAGITLIDEKNHVASDVMSQADIACYAAKNSGRGR 821

Query: 692  VESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +            ++ + E       N  L +        + E        ++    
Sbjct: 822  VCVYEPQQSEAHAARSQLSLDEQRHTITHNPMLIIARGVASPRIPETFSFWLLSLRLGTT 881

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            + G I    F     +  + +A++  +     +             + I + +++  LL+
Sbjct: 882  EGGIIEEHAFRAGLVDPTLNQALDRRVFTEFFQSAAP---AVANKGLSIALPLSAAGLLN 938

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             EL + +   +  +   P  + L+   +V+  NP ++   L RLR+ G  + L   G   
Sbjct: 939  TELVDQLLEQLQGSPLPPRLLHLTVPANVLKTNPTQATSTLHRLRQCGCRIILSHVGRDL 998

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             L   L Y   D +  +  L   +         +  I   A+ ++   IA  +   + + 
Sbjct: 999  ELFDNLKYHMVDYLLLDSELSASAHGNLIDEMWVSIIQGHAQRLDIKTIAGPVQLPLIMD 1058

Query: 926  ELTRMGCDYIQDSHVASPLGFNSILK 951
             L+ +G D I    +A     + +L 
Sbjct: 1059 ALSGIGIDMIYGDIIADAQPLDLLLN 1084



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 87/311 (27%), Gaps = 12/311 (3%)

Query: 224 MAWVVLGYISIDFGFLSKLVN--LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAK 281
           +A+       +  G L  L      S    +    SE   + +L+    ++        +
Sbjct: 109 LAFGSAVVPPLLGGVLLWLFLPKETSLNTFLIWVLSESIGALALVPLGLLFKPHYLLRHR 168

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
              +    +  + +    S+        ++ + L          +++  ++       LI
Sbjct: 169 DPRLLLETVITLLVTLTFSW--------LSMMYLPWPFTCVIVLLMWSAVRLPRMEAFLI 220

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
               ++ +  +              +  ++     L+++L    +   + A     + I 
Sbjct: 221 FLSTVMMVSLMLAADPSLLYTPRPNMMTSIPWLPFLMILLPANMMTMVMYAFRAERKHIS 280

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
               R   A+  S   +         +     +   LG +   +      +       D 
Sbjct: 281 ESESRFRNAMEYSAIGMALVGTEGQWLQANKALCQFLGYSQEEL--RSLTFQQLTWPEDL 338

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +N    LD            E R         W ++ +  + +S+   L +I    DI +
Sbjct: 339 NNDLEQLDMLTRGEINSYSMEKRYYTRSGDVVWALLAVSLVRHSDNTPLYFIAQVEDIND 398

Query: 522 QKKSLEGILCN 532
            K +       
Sbjct: 399 LKHTEWINKRL 409



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+W++  D ++    +  +  + +  +    + W   +   DR++
Sbjct: 410 MERITLANEAGGIGIWEWELQPDVISWDKRMFELYEVPAH-IKPSWQVWYNCVVPEDREH 468

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++   +  R    + EFR+   D     +      + N  G++ R++GI  D+TE K
Sbjct: 469 AENVIRDSLAAR-APFKLEFRIAVKDG-VRHIRSLANRVLNKEGEVERFLGINMDMTEVK 526

Query: 524 KSLE 527
           +  E
Sbjct: 527 QLNE 530


>gi|194431574|ref|ZP_03063866.1| PAS domain protein [Shigella dysenteriae 1012]
 gi|194420399|gb|EDX36476.1| PAS domain protein [Shigella dysenteriae 1012]
 gi|332092296|gb|EGI97372.1| hypothetical protein SD15574_2202 [Shigella dysenteriae 155-74]
          Length = 1015

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 452  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 511

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 512  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 570

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 571  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 629

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 630  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 689

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 690  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 749

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 750  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 809

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 810  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 866

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 867  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 922

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L +          ++  I   A+ +    IA  +   + + 
Sbjct: 923  QIFNSLKANMADYLLLDGELCSNVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 982

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 983  TLSGIGVDLIYGDVIADAQPLD 1004



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 99  RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 158

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 159 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 218

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 219 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 278

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 279 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 338

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 339 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 397

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 398 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 455

Query: 525 SLE 527
             E
Sbjct: 456 LNE 458



 Score = 88.1 bits (217), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 59  GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 117

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 118 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 166

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 167 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 226

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 227 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 284

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 285 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 337


>gi|147675480|ref|YP_001217257.1| hypothetical protein VC0395_A1313 [Vibrio cholerae O395]
 gi|146317363|gb|ABQ21902.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227013615|gb|ACP09825.1| PAS/EAL family protein [Vibrio cholerae O395]
          Length = 818

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 198/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A        + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGDVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKYQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|224372715|ref|YP_002607087.1| ggdef family protein [Nautilia profundicola AmH]
 gi|223588634|gb|ACM92370.1| ggdef family protein [Nautilia profundicola AmH]
          Length = 676

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 193/434 (44%), Gaps = 33/434 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++++ I   A  D LT + NR  F   +          +    ++++ DIDK+K IN+ L
Sbjct: 268 ETIKKITFLAQNDQLTSLKNRIKFEMDVK---------NKNEVSLIIFDIDKFKSINNFL 318

Query: 584 GIAVGDDVLVSLTRRI---GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           G  +GD +L+SL + +    +++ +     R+  + F  +L+  N+   ++  A    K 
Sbjct: 319 GSEIGDMILISLAKELEKFKKIIPYETEAYRIGADEFA-LLVHSNDIEIVSVIAEEFIKQ 377

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +   + L E ++++T S G ++          +L+NA++A+  A+    + +  ++ S  
Sbjct: 378 VESKLLLPELDLSITLSAGISTKPP-------LLENADIALKRAQKDIKDKIIIYKDSFQ 430

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
              ++ ++  +++  A+++  L      I    D++I   E L +        +S   ++
Sbjct: 431 EQIKINLQKAQEIRRAIQSGNLITYVQGIFD-KDKKIFKYEVLCRVKIGN-KIVSIFPYL 488

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I +E+ M   I   +L+     +   +       + + IN++ +D+ + ++   +   +
Sbjct: 489 QITKEIKMYHHITFQVLKDSFDVLEKNQK------VNLSINLSLEDINNKDIKNFIYMRL 542

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +       RI     ES  + N +     +  +++ G++  +DDFG+  S  S +  +  
Sbjct: 543 NNNPNLAKRITFEILESE-IDNYDELSEFIYMMKQRGVTFAIDDFGSGYSNFSRILNLNV 601

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +GS++    + +    +L++I+  AK      +A+ I+ E   +    M  +Y Q
Sbjct: 602 DFIKIDGSIIKNIDKDKTSRNVLKTIVSFAKENNLHTVAEFIHNEKIFEIAKSMNIEYFQ 661

Query: 937 DSHVASPLGFNSIL 950
              +  P    ++ 
Sbjct: 662 GYFLDEPKPIENLR 675


>gi|323936872|gb|EGB33156.1| GGDEF domain-containing protein [Escherichia coli E1520]
          Length = 1105

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPETRNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L +          ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCSNVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 106/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H            
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G   W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGTWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 86/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I         A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|296272324|ref|YP_003654955.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096498|gb|ADG92448.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
          Length = 539

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 172/449 (38%), Gaps = 34/449 (7%)

Query: 515 IANDITEQKKSLEGILCNAFQ-------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           I   I  +K          +        D LT +PNR      L                
Sbjct: 111 ILKPIDMKKLLQVMSQSLLYHELKDLYVDKLTRLPNRNKLKKDLDLTAQDL--------- 161

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISEN- 625
           + +I+IDK+  IND+ G   G+ +L+  +  I +     D  + R+  ++F ++      
Sbjct: 162 MALINIDKFSTINDLFGEDNGNKLLIQFSMIIKQFFSSDDYRVYRIESDKFAVVAKDYAM 221

Query: 626 NSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTS--SKITSSEMLKNAELAMY 682
           +  +           I    I + E EI +  +IG A   +  +   +  ++  A     
Sbjct: 222 DIKEFEILCEKFANHIEENAIFIDENEIDLNVTIGIACADNKLAYKYTERVINYA----R 277

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
               +   +  SF +     D +   +++   ++       Y PI+    +EI   EALI
Sbjct: 278 KRFEQILVYDNSFNIQESFEDNIKWVKEVKKGLKEGLFVAFYQPIVNTQTQEIYKYEALI 337

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           ++ + +   I+  +F+ IA++  +   I   ML      I   +         + +NI+ 
Sbjct: 338 RYINEQGEVIAPIKFLDIAKKAKLYSYIIEIMLLEAIGLIKEQKK-------RVAVNISF 390

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            D+ + +  + +   + +       ++    ES  + N       + +++ +G S+ +DD
Sbjct: 391 DDITNTKTTKKIYDTLEENKEFVHLLEFEILESEEINNFATVTTFIDKVKSLGCSVGVDD 450

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FG   S  + L  +  D VK +GSL+      + +  I+ +I   +K      +A+ +  
Sbjct: 451 FGAGYSNFNMLTNLNIDFVKIDGSLIKNIDTSKNQQIIVETIADFSKKFGFKTVAEFVSS 510

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E   +++  +  DY Q  H   P   + I
Sbjct: 511 EEIYEKIKELNIDYCQGYHFGKPESKDKI 539


>gi|323144291|ref|ZP_08078909.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Succinatimonas hippei YIT 12066]
 gi|322415933|gb|EFY06649.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Succinatimonas hippei YIT 12066]
          Length = 762

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 179/450 (39%), Gaps = 22/450 (4%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           ++     L  A  D LTG  N   F   L+ I     +      T++ ++I  +  +N++
Sbjct: 321 RRGYNKQLELASFDLLTGAYNIFKFKKELSNI-----SFKEKEVTLIALNIRDFHYLNEI 375

Query: 583 LGIAVGDDVLVSL---TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
            G  V +++L ++   T+   E++       R   ++F +++    + + I         
Sbjct: 376 AGTEVCNEILKTIVVSTKNFKEIIYK----CRTRVDQFYLLITP-TDPIAINKLFFEFIH 430

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
           +I   ++    ++ +     +A  +++    S +L   +      K    + +E++    
Sbjct: 431 TIENNLSNFSIQLPIVFYASYAISSANDND-STLLHKVDFVQKQMKKSYVHKLEAYDDKT 489

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    I+  +  A+EN E  +   P I +   ++V  EA+++W       I  + F
Sbjct: 490 HQQEKFIKQIEGKMRQALENDEFKIYLQPKIEVSSGKLVSAEAVVRWHQADGSIIFPNSF 549

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + I EE      ++L+  ++I   I  W+ Q     + I IN +   LL  +    +  +
Sbjct: 550 ISIFEENGFCVDLDLYNFQKICLIIKQWQQQF-KTNLNISINQSMNLLLRKDYIANIHRI 608

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I KT   P  I +   ES+   N       +  +  +G+ + LDDFG+  S L+ L  I 
Sbjct: 609 IDKTEVDPKLITIEILESIAAQNINELINCVNNIHFLGLQVALDDFGSGYSSLNVLAKIK 668

Query: 878 FDTVKFNGSLMTGSTEKRI----AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            D +KF+   +      +      ILR +  +A +     +A+      ++  L ++ C+
Sbjct: 669 IDELKFDKEFLLEKDPIKQKYNEEILRHMTELAASFNIKTVAEGCETAQNLSFLKKINCN 728

Query: 934 YIQDSHVASPLGFNSI-LKLLKERFPLVKN 962
             Q      PL   +   K L  +   + +
Sbjct: 729 IAQGFFFDKPLSLENFIEKYLTNKNSALTS 758


>gi|27261168|gb|AAN87565.1|AF457211_9 UrfM [Escherichia coli]
          Length = 314

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 113/241 (46%), Gaps = 5/241 (2%)

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +L L Y P++ L D  I G EAL++W HP+ G +   +F+ +AE   ++  I  ++L 
Sbjct: 20  RGQLDLHYQPLVDLRDHRIAGAEALMRWRHPRLGLLPPGQFLPLAESFGLMPEIGAWVLG 79

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  W+      P  + IN+++  +      + ++ +++        +++  +ESV
Sbjct: 80  EACRQMHKWQ-GPAWQPFRLAINVSASQVG-PTFDDEVKRVLADMALPAELLEIELTESV 137

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
             GNP         LR IG+    DDFGT  S L +L   P  T+K + S +       +
Sbjct: 138 AFGNPALFASF-DALRAIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVARLPDDAR 196

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+R++I +A  +   ++A+ +     +  L + GCD +Q    A P+   + +  + 
Sbjct: 197 DQTIVRAVIQLAHGLGMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVN 256

Query: 955 E 955
           +
Sbjct: 257 Q 257


>gi|313898609|ref|ZP_07832144.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. HGF2]
 gi|312956493|gb|EFR38126.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Clostridium sp. HGF2]
          Length = 426

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 149/425 (35%), Gaps = 20/425 (4%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           + NR       + +            +++  ++ K++          G+++L  + +   
Sbjct: 10  LYNRSELQAVFSQL------QPREEYSLLHFNVKKFRYFLGRYDHETGEELLQQILKTFT 63

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT--VTASI 658
           + LK    L    G+ F  ++       +       + +       L +      V  S+
Sbjct: 64  KGLKKGQYLLYTGGDDFIFLIH----EWRKKKIIDELIQRDYEGYELKDSRFFNKVFFSM 119

Query: 659 GFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC----L 713
           G                  A LA   +K       +    +  +     ++  L      
Sbjct: 120 GVCRLRDFPEADFETCCLYAWLARITSKEHEKKSSDFKFFTRKQLQEFQMRSQLEVKTVE 179

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A       +   P +     +I G EAL++W       I  S F+ +  E   I+ ++  
Sbjct: 180 ACRKETYAVYIQPKVDAKTLKICGGEALLRWFDEDGTMIPLSLFLPVLNENSYIRYVDQM 239

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E + + I     Q  M  + I  N++     D    +    +  +       I+    
Sbjct: 240 VFELVCKMIQE-SIQKGMKMVPISFNLSKASFEDEPFMQEYMEVFQQFDIPKEYIEFELL 298

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
           ES+ M N ++   ++  + K G    LDDFG+  S +S L  +P D +K + SL      
Sbjct: 299 ESISMDNSDKLIKVVDTIHKEGFRCALDDFGSGYSSMSVLARVPIDIIKLDRSLFQNPYR 358

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                 I+  ++ +  +    I+A+ +  E   + + + GCD IQ  +   P+  +   +
Sbjct: 359 DIDNFLIVDGLLDILHHFPVQIVAEGVEDETVAEHMRQHGCDMIQGFYYYRPMPMDEFQR 418

Query: 952 LLKER 956
           L+ E+
Sbjct: 419 LIAEQ 423


>gi|324019214|gb|EGB88433.1| PAS domain S-box [Escherichia coli MS 117-3]
          Length = 897

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 334 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 393

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 394 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 452

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 453 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 511

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 512 DLDRFKTVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 571

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 572 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 631

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 632 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 691

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 692 EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 748

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 749 ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 804

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 805 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 864

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 865 TLSGIGVDLIYGDVIADAQPLD 886



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q      ER +LA    G  +W+W++  +  +    +  +  +
Sbjct: 197 LYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEI 256

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 257 PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALAN 313

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 314 RVLNKEGEVERLLGINMDMTEVKQLNE 340



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 65/215 (30%), Gaps = 2/215 (0%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
              +    +++  ++       LI    ++ +  +              +   +     L
Sbjct: 7   PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFL 66

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +++L    +   + A     + I     R   A+  S   +         + T   +   
Sbjct: 67  LILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQTNKALCQF 126

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG +   + G    +       D +     ++  +         E R    +    W ++
Sbjct: 127 LGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALL 184

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  + +++G  L +I    DI E K++ +     
Sbjct: 185 AVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 219


>gi|298292708|ref|YP_003694647.1| diguanylate cyclase/phosphodiesterase [Starkeya novella DSM 506]
 gi|296929219|gb|ADH90028.1| diguanylate cyclase/phosphodiesterase [Starkeya novella DSM 506]
          Length = 569

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/557 (17%), Positives = 203/557 (36%), Gaps = 33/557 (5%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND----RDN 463
           + AV   G   + W +  D V  +     +LG     +    RN+   I         D 
Sbjct: 22  AEAVRALGAASYRWTLSDDLVRWSAAAEEVLGRERMPLALRGRNYAELIEPGSGNSRHDA 81

Query: 464 FRTILDSFV----GYRRGRLQYEFRVRAADNQ---FHWMIIRIRPMSNSNGDILRYIGIA 516
               +   +           +  + +           W+  R     ++ G ++R  G  
Sbjct: 82  ALASMQLGIVPGGDGSTRFFETVYCLALPPGSGQRRLWVEDRGVCHFDAEGGLVRVDGFL 141

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             +   +    G+   A     T    RQ     +   L L+  +D+     +++ +D  
Sbjct: 142 RRLAVGRPVRIGLSRGAE--PKTD---RQRLAGLIEERLSLAYREDS-EFGFVLVGVDHL 195

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
             +ND  G  V D+V+  +  R+   L   + LAR SG++FG++L ++            
Sbjct: 196 GDLNDAYGFLVADEVIDVIWLRLRAQLAEGEELARFSGSKFGLLLRAQPGEGFAPAARRF 255

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF- 695
           +    A P       +  T S G         T SE+  +A+  ++ A+      +E + 
Sbjct: 256 LATVNATPPRTSAGAVAATVSAGGLIAPRQGRTVSEIFAHAQDTLHRARRSARGTLEMYS 315

Query: 696 ---RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                ++ R   V   +++  A++   + L + PI       I   E L +         
Sbjct: 316 PALDRAAERHANVRFADEIVDALDEDRVSLAFQPIACGQTRAIAFHECLARITGRDGRMH 375

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
             +  +  A+   + + ++   +E     + +       P   + +N++   + D     
Sbjct: 376 DGATIIPTADRFGLTRLVDGRAMELALAALRA------DPAARLSVNVSPGSINDAAWLG 429

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++   ++   S SR+ +  +ES  + + E  R  +  LR  G  + +DDFG   +    
Sbjct: 430 LVEEG-ARAGLS-SRLIVEITESTTIPDMEAMRARIAWLRGHGCKVAMDDFGVGYTSFRN 487

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K +GS +     +E   + +R ++ +A  +    +A+ +  E    +L   
Sbjct: 488 LRSLHVDMLKIDGSFIATMMQSEDDRSFVRVLLDLAGQLGIETVAEWVLDEETGSQLVEW 547

Query: 931 GCDYIQDSHVASPLGFN 947
           GC Y+Q   +   L  +
Sbjct: 548 GCTYLQGELIG--LPAD 562


>gi|323172655|gb|EFZ58289.1| hypothetical protein ECLT68_2830 [Escherichia coli LT-68]
          Length = 1105

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRNGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI EQK++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINEQKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINEQKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|268678971|ref|YP_003303402.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617002|gb|ACZ11367.1| diguanylate cyclase [Sulfurospirillum deleyianum DSM 6946]
          Length = 433

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 189/420 (45%), Gaps = 29/420 (6%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LT +PN       L           +   T+++ +ID +K +ND  G  VGD VL 
Sbjct: 34  YTDPLTRLPNLYKLRHDLEE---------DNNFTLILANIDNFKLLNDFYGFLVGDFVLE 84

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM-RKSIAMPINLLEREI 652
           S  + + E  +   ++ R++G+ F +++  + N   + ++  ++ RK I +     + EI
Sbjct: 85  SFAKSLQE-SQKEAVVYRIAGDEFALLIKEKMNFYLLKEYLDSLARKLIHLKYAYAQTEI 143

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRVSSFRSDRVMIKE 709
            V  ++  ++     ++  ++     +A+ +AK +   +         S      +    
Sbjct: 144 YVDCTLSSSAS----LSHHDIFSKVNMALKYAKKQQLKYWIYEDSMSFSQEYETNLKYAT 199

Query: 710 DLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +  A+ ++S +   + PII     EIV  EAL +    +    + + F+ +A+ + +  
Sbjct: 200 KVRKAIVDSSGIVPYFQPIIDNKTNEIVKFEALSRLIDEEGRIHNPNHFIPVAKTIKVYD 259

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I + ++E+      S+       P    +N++ +D+++ E+C+ +   ++ +     R+
Sbjct: 260 KITMTIIEKSFEVFQSY-------PFDFSVNLSFEDIINPEICDFIIDKLTTSKI-GHRV 311

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + +  +  L    +++ G  + +DDFG+  S  SY+  +  D +K +GSL+
Sbjct: 312 TFELLESEKVEDFNKVILFFYEIKRYGAKVAIDDFGSGFSNFSYIIKLKPDFIKIDGSLI 371

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + +    ++ +I+  +K +    +A+ ++    +  + ++G DY Q  ++  P  F
Sbjct: 372 KELDKDKNAQIVVETIVSFSKKLGIKTVAEFVHSSTVLSAVKQLGIDYSQGYYIDMPSPF 431


>gi|218682750|ref|ZP_03530351.1| putative signal-transducer protein [Rhizobium etli CIAT 894]
          Length = 280

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/278 (28%), Positives = 136/278 (48%), Gaps = 9/278 (3%)

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M HAK  G      F        ++   ++ DL  AV   E  L Y P+  L    I G 
Sbjct: 1   MSHAKADGRKRERFFDSEMEAQMQLRHALEADLRAAVATDEFELHYQPLYDLSQRRICGF 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EALI+W+HP  G ++  +F+ +AEE+ +I  I  ++L +   D   W +      I + +
Sbjct: 61  EALIRWNHPVRGRVAPMDFIPLAEEVGLIVDIGRWVLRQACSDAAQWPE-----DIKVAV 115

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+++     ++L + +   ++    SPSR++L  +ESV+M N +    +L  L++ GI +
Sbjct: 116 NVSAIQFSGSDLTKDVGEALAAASLSPSRLELEITESVLMENLDEVLPILHALKERGIRI 175

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAK 916
           ++DDFGT  S LSYL   PFD +K + S ++     ++  A++ +II +   +   +  +
Sbjct: 176 SMDDFGTGYSSLSYLSSFPFDKIKIDKSFVSDIAGNKEAHALMHAIILLGDALGMRVTVE 235

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +     +  L    CD IQ  H++ P     +  LL 
Sbjct: 236 GVETAAQLTLLECEECDEIQGYHISPPRPARDVPHLLS 273


>gi|254224859|ref|ZP_04918474.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622547|gb|EAZ50866.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 818

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 198/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F  +L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSAQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|255091524|ref|ZP_05321002.1| putative signaling protein [Clostridium difficile CIP 107932]
          Length = 296

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 143/296 (48%), Gaps = 5/296 (1%)

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYL 722
            + I  +   + A  A    K +  N+   +     +   +   ++ ++  A+EN + ++
Sbjct: 2   DNNIPITNACEMAGYAHKKVKKQSINNYIFYDDTIRNDALEEKQMEREMEYALENGQFHV 61

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              P   L   +IVG EAL++W HP+ G I   +F+ + E+   I  +++++ E++   I
Sbjct: 62  YLQPKYNLNANKIVGAEALVRWVHPEKGIIPPIKFISLFEKNGFIIRLDMYVWEQVCSLI 121

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W D     P+ I +N++   L +    E + +LI+K     S ++L  +ES+ + N +
Sbjct: 122 RKWID-LGEEPVPISVNVSRLHLHNPHFKEIVLSLINKYSIPKSFLELELTESLFIKNIK 180

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILR 900
               ++  LR  GI L +DDFG+  S L+ L  I  DT+K +       G T++   +LR
Sbjct: 181 LFTKIIADLRMDGIVLNMDDFGSAYSSLNMLKNINIDTLKIDCGFFNEEGITDREKIVLR 240

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             I MAK+++  ++A+ +  +   + L  + C  IQ  +   P+      KLL ++
Sbjct: 241 HTIAMAKDLDMDVVAEGVETKEQAEFLVSLDCVVIQGYYYCKPIPSADFEKLLYQK 296


>gi|153800998|ref|ZP_01955584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124123468|gb|EAY42211.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 818

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/561 (17%), Positives = 199/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F D+L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETQTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LSLSNLIHASDYRKHLKLTNR 677


>gi|299532549|ref|ZP_07045939.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
 gi|298719496|gb|EFI60463.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni S44]
          Length = 593

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/451 (23%), Positives = 206/451 (45%), Gaps = 24/451 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E           +F D LT +PNR+  LDRL+  +  S      R  ++ ID+++ +   
Sbjct: 142 ELLPHGNEAESLSFFDVLTNLPNRRLLLDRLSQAMIQSERT-GWRGALLTIDMEQVE--- 197

Query: 581 DVLGIAV--GDD---VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----I 630
              G A   GD    +   + +R+   ++  D +ARL    F I++   +  ++     +
Sbjct: 198 ---GPAASTGDSQSCLAPHIAQRLLGCVRSCDTVARLDAAHFVIMVSDLSPDIEMTTVLV 254

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +++S+     L  +   + A+IG   +     +++E+L+ AE+AMY  +     
Sbjct: 255 ERLGERLQESLNGSYQLGHKSAMLEANIGATLFGPHSRSATELLQQAEVAMYRLRDEEAR 314

Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F        +DR  +++DL  A+   +  L Y         E+ GLEAL++W HP+
Sbjct: 315 GLHFFSPEQQVPANDRSRLEQDLREALRLGQFELHYQAQYS-ASGEVNGLEALLRWRHPR 373

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +  S F+ +AEE  +I A+  + ++     +  W+ +  +  + I +NI++K L   
Sbjct: 374 RGLVPPSIFLSVAEETDIIVALGRWSIQAACEQLARWKAELQLDRLPICVNISAKQLRQA 433

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L E +Q+++S+T   P+ + L  S   +      S   L R+  +G+ L+LDDFG   S
Sbjct: 434 DLAEQVQSILSQTGADPALLLLELSAQTLSPLDADSASSLKRIGAMGVRLSLDDFG-GSS 492

Query: 869 LL-SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            +   L  +P + +K + SL+          A +++ I +A   + TI+   +       
Sbjct: 493 NMQEALQQLPLNQLKLSHSLVQRLGPNNAAEAAVQAAIALAARHQMTIVGAGVETLEQRA 552

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L + GC++     ++ P   + +  L++ +
Sbjct: 553 LLAQHGCEHFMGYLLSPPAPVSQLKSLMQRQ 583


>gi|323529618|ref|YP_004231770.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
 gi|323386620|gb|ADX58710.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1001]
          Length = 777

 Score =  284 bits (728), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 176/463 (38%), Gaps = 32/463 (6%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + W+     P +     ++ + G            + +   A  D LTG+ NR++F+ + 
Sbjct: 163 WMWVAAIGMPTA-----VVFHFGFYAFRRNHFLLEDQLAQLAATDPLTGLQNRRAFVAQA 217

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L   A    +    + +DID +K +ND  G AVGD  L  + + + +     D ++R
Sbjct: 218 ERRLADVARGGQVSA--IFVDIDNFKSLNDRFGHAVGDLALRQVAQVLLDGTTHGDSVSR 275

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G  F ++  S  +       A  +R +IA           +TAS G A          
Sbjct: 276 IGGEEFAVL--SGEDLAGALRLAERLRGAIAALERPDG---NLTASFGVAE-HRGGENIM 329

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--------LCLAVENSELYLV 723
            +L  A+ A+  AKH G N V + R       +++I++              E+  L   
Sbjct: 330 VLLDRADEALLRAKHSGRNRVCAERPLPDAPLQLLIEDACGAAGAPGSRHRWEDYYLTSH 389

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR--D 781
           + P+  L  ++ VG EAL++ +      +  +               +  +L+R +    
Sbjct: 390 FQPLFSLSHQKQVGFEALLRGELDDGTLLPPAVLFAPKASS------DEGVLDRASHAVH 443

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           + + R        ++ +NI     +     + +  ++ +   +P ++ L   ES   G+ 
Sbjct: 444 LANARASLPA-DGWLFLNILPATFVAEGYADELAGIVQRVGLAPGQVILEILESHG-GSV 501

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAILR 900
           +         R+ G  + +DDFG   S L  L  I  D VK +G L+  +       IL 
Sbjct: 502 DEMSRAAALYREHGFLIAVDDFGAGQSNLDRLLRIRPDIVKLDGELIRATGHGTGQPILP 561

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            ++ +       ++ + +    ++        D+ Q   +  P
Sbjct: 562 KLVSLLHQAGMLVVVEGVETTEELILAVESNVDFAQGYLLGRP 604


>gi|229515100|ref|ZP_04404560.1| hypothetical protein VCB_002755 [Vibrio cholerae TMA 21]
 gi|229347805|gb|EEO12764.1| hypothetical protein VCB_002755 [Vibrio cholerae TMA 21]
          Length = 818

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 198/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F  +L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSAQLKQHLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|317493052|ref|ZP_07951476.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919174|gb|EFV40509.1| GGDEF domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 995

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 100/564 (17%), Positives = 215/564 (38%), Gaps = 17/564 (3%)

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL 453
                 ++ + ER  + +   GD V   D  +      P    + G       G   +  
Sbjct: 428 QQLLDKLYEEKERLHITLTSIGDAVISTDSYKHVTFMNPVAEKMTGWTQLEALGLPID-- 485

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRV--RAADNQFHWMIIRIRPMSNSNGDILR 511
             +H+ D  +  T+    +       + E R+  +        +  R+  +++ + +++ 
Sbjct: 486 NIVHLYDGVDGDTVHPLRIDEVSHAKRTEDRLILKNRQGAHFDVQSRVSELTDIHRNLMG 545

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           Y+ +  D++E ++ L  +  +A  D LTG+PNR SF   L   L  +  +      ++ +
Sbjct: 546 YVLVFQDVSESRELLRKLSYSALHDPLTGLPNRVSFEQALKRALRQAVEEKRTH-ALVFL 604

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  +++ +    + PD+LARL G+ F  IL+         
Sbjct: 605 DLDRFKAVNDSAGHAAGDALLQKISQSMLSHTRPPDMLARLGGDEFAFILLDCEIHKAKE 664

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                + +          +   V AS G     S    +++++  A++A Y AKH G   
Sbjct: 665 HITRIINEINDYLFEWEGKLHRVGASAGMTVINSGNAIAADLMNQADIACYTAKHSGRGK 724

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +  +             ++  ED+   +    ++++   I        +    L    + 
Sbjct: 725 LMCYEPKHKLHINYEKGLLSGEDIDAILAEDRIHILAQGIAPPKTPRAIAFYNLELMPYQ 784

Query: 748 KWGN-ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             G  I    F+    +    + ++ ++L ++               + + + +AS  L 
Sbjct: 785 NNGVNILPELFLESCFQSHRREHVDRWLLHKVLNHTSQ---ALKYKGVSVALPLASSSLC 841

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           + +    +  ++ ++    SR+ +   ES V  +  +S   L  L ++G  L ++DFG  
Sbjct: 842 NAQFTAQLIEMLQQSALPTSRLLIRVPESAVNEDYAQSLPALKALSELGCRLIVEDFGRN 901

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S +  L  +  + V    +L+T     +    ++  I   A       IA     +  +
Sbjct: 902 LSAIERLESVNIEYVMITPTLITNVHCNQMDEVLVSIIHGNAWRHGAQTIAGPADIQATL 961

Query: 925 KELTRMGCDYIQDSHVA--SPLGF 946
             L  +  D    + +    PL  
Sbjct: 962 LTLDSIKIDLAFGNMIQEVKPLTA 985



 Score = 95.4 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 97/309 (31%), Gaps = 15/309 (4%)

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           +    L  I +    L+    +       + + S   ++ + +  L+ Y    +   +  
Sbjct: 137 LLSATLAAIVVSLHGLATFNQVFGVW---FMSESISVMALTPVGLLYYYGFLQKSLREQT 193

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
            +    I  IA++ C            A   L     +    +++  ++           
Sbjct: 194 MVECITIITIALISCF----------YAMQYLPFPFTFAVIPMLWAAIRLPLLQAFTSFL 243

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
            ++I +  +  +  +  R     +   L+   +L+V+L   +V   + A       I   
Sbjct: 244 CVIILLAIMIAYHIVDIRAAYPSVNDVLLYTPLLLVLLPVNSVAVLMHAFRSERDHIEES 303

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             R    +  S        +    +   P +  +LG  +  +      +    H +D + 
Sbjct: 304 ETRFRNVIEFSAIGTALVGLDGRWIQVNPALCQMLGYPADVL--TDMTFQDITHRDDLET 361

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L++ V         E R   +  +  W ++ +  + +  G  L ++    DI+E K
Sbjct: 362 DLRQLNALVDGEINSYSMEKRYLRSSGESIWTLLSVSLIRDPQGKPLYFVSQIKDISEIK 421

Query: 524 KSLEGILCN 532
            +       
Sbjct: 422 NNERYKQQL 430


>gi|16329581|ref|NP_440309.1| hypothetical protein slr1593 [Synechocystis sp. PCC 6803]
 gi|1652064|dbj|BAA16989.1| slr1593 [Synechocystis sp. PCC 6803]
          Length = 303

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           IK  L  AV      L + P        +VG+EAL++W  PK GN+  +EF+ IAEE  +
Sbjct: 40  IKWALTKAVTEGGFRLDFQPQWDGQGINLVGVEALVRWQDPKLGNVPPAEFIPIAEETGL 99

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           + AI  ++L+   R    W+ Q  +P   + +N++ + L   +  E ++ ++ +T    +
Sbjct: 100 VTAIGEWVLDTACRQYKIWQAQ-GVPAFLLGVNLSLQQLQKADFAETVRCILEETNMPAA 158

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           +++L  +E ++  + + +  +L  L+++G+ L +DDFGT  S LS L  +P  T+K + S
Sbjct: 159 QLQLEMTEGLIFRDLQHTIGVLRDLQRLGVHLAIDDFGTGYSSLSVLKELPVHTLKIDKS 218

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +      +K   I+ SII + + ++  ++A+ +  E  +  L  + CD +Q    + PL
Sbjct: 219 FLEDLETHQKAEVIIESIINLGQRLQLVVVAEGVETEGQLHLLQSLRCDVLQGFFFSCPL 278

Query: 945 GFNSILKLL 953
             + +   L
Sbjct: 279 SEDKMTHYL 287


>gi|16130007|ref|NP_416571.1| predicted diguanylate cyclase, GGDEF domain signaling protein
            [Escherichia coli str. K-12 substr. MG1655]
 gi|89108887|ref|AP_002667.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli str. K-12 substr. W3110]
 gi|170019606|ref|YP_001724560.1| putative sensor protein [Escherichia coli ATCC 8739]
 gi|170081697|ref|YP_001731017.1| diguanylate cyclase domain-containing signalling protein [Escherichia
            coli str. K-12 substr. DH10B]
 gi|238901257|ref|YP_002927053.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli BW2952]
 gi|2506685|sp|P38097|YEGE_ECOLI RecName: Full=Probable diguanylate cyclase YegE; Short=DGC
 gi|1736771|dbj|BAA15920.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli str. K12 substr. W3110]
 gi|1788381|gb|AAC75128.1| predicted diguanylate cyclase, GGDEF domain signaling protein
            [Escherichia coli str. K-12 substr. MG1655]
 gi|169754534|gb|ACA77233.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Escherichia coli ATCC 8739]
 gi|169889532|gb|ACB03239.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli str. K-12 substr. DH10B]
 gi|238862244|gb|ACR64242.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli BW2952]
 gi|260448833|gb|ACX39255.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Escherichia coli DH1]
 gi|309702391|emb|CBJ01713.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|315136701|dbj|BAJ43860.1| putative sensor protein [Escherichia coli DH1]
 gi|323161845|gb|EFZ47722.1| hypothetical protein ECE128010_1939 [Escherichia coli E128010]
          Length = 1105

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISISLPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 107/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H            
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 86/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I         A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|27365541|ref|NP_761069.1| GGDEF family protein [Vibrio vulnificus CMCP6]
 gi|27361689|gb|AAO10596.1| GGDEF family protein [Vibrio vulnificus CMCP6]
          Length = 822

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 216/561 (38%), Gaps = 44/561 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFR 465
              A       +   D     +          G     + G   + L    H ++   F 
Sbjct: 129 FRQAFDNDHHGILLTDAATQILLCNRYFENHTGYKLNQIVGQCASILDSGKHSDE---FY 185

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   V   +G  Q    +R          + ++ ++  +   + Y+G+  D +++   
Sbjct: 186 QSITEEV-NSKGLWQGVVLIRTFGGAIVPQELTLQKLTCDDK--VYYLGLYVDFSDRLYR 242

Query: 526 LEGILC----NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           L  +            LT +P  + F  +LT  +    ++++    V+   +  +     
Sbjct: 243 LADMEHGGVEL-----LTQLPTEKQFTQQLT--VRWMDSNNDDLLMVLAF-LPNF----- 289

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP---DILARLSGNRFGIILISENN--SLKIADFAIA 636
               A GD+  +   +R+ E L+       +  L GN F   +    +    ++      
Sbjct: 290 ----AAGDEYELK--QRLSESLEKNRVSSAVGYLGGNHFVAAIECNKSQGPNQVQIIHQT 343

Query: 637 MRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +RK  A   +L   E+    +   +G +           M+ +A  AM     +    + 
Sbjct: 344 IRKFFAQLTHLSGEEVQNALLRGKVGVSILGHDTQNPKVMVSHAVQAMLEHDGQHKGMIT 403

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S  R    R  ++E +  +++   + + Y PII     +I   EAL ++       
Sbjct: 404 FYHGSIHREVLRRRELEELVVRSIKEESVEVFYQPIIDTATWDIAKFEALCRFKDKHGQW 463

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNEL 810
            ++ E + IAEEL M+  ++  + ++  + + S  ++     I I IN +    L   E+
Sbjct: 464 QNTQELVGIAEELEMVADLDWTVGKKSLQGLKSIHERFG-TRIGITINRSLNTKLGAEEV 522

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            +  + +I     +P  + +  +ES    +      L+ R+R +G+S+ +DDFGT  S  
Sbjct: 523 LQNAEQMICLYSDTPELVTVELTESAYFDSESSQSELIKRIRNMGVSVAIDDFGTGYSSF 582

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL    FD +K +   +T       +  I+R I  ++  +   ++A+ +  + +++ L 
Sbjct: 583 TYLSDCNFDLLKIDKEFVTDIHVGTHKYHIVRMITELSHTLNVKVVAEGVETKQELEVLC 642

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
            +G DYIQ    + PL  + +
Sbjct: 643 GLGVDYIQGYFFSKPLPLDQL 663


>gi|300928185|ref|ZP_07143726.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300463780|gb|EFK27273.1| PAS domain S-box [Escherichia coli MS 187-1]
          Length = 1105

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/559 (18%), Positives = 201/559 (35%), Gaps = 15/559 (2%)

Query: 395  YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
              ++ +F + ER  + +   G+ V   D+        P    + G       G     + 
Sbjct: 545  QLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVL 604

Query: 455  YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
            +I   D       + S     R  ++ +  +       + +   I P+S  +G  +  + 
Sbjct: 605  HITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVL 663

Query: 515  IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
            +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ ID+D
Sbjct: 664  VIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFIDLD 722

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N         
Sbjct: 723  RFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIAT 782

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              +            R   V AS G      +   ++E++  A++A Y +K+ G   V  
Sbjct: 783  RIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTV 842

Query: 695  FRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +      +      + + E   +  EN  + L +      + E        ++    +  
Sbjct: 843  YEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSCEGE 902

Query: 751  NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
             I    F     +  +  A++  +     +             I I + ++   L    L
Sbjct: 903  IIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISISLPLSVAGLSSATL 959

Query: 811  CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
               +   +  +   P  + L      ++ + E       +LR  G  + L   G    + 
Sbjct: 960  VNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDLQIF 1015

Query: 871  SYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            + L     D +  +G L            ++  I   A+ +    IA  +   + +  L+
Sbjct: 1016 NSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLS 1075

Query: 929  RMGCDYIQDSHVASPLGFN 947
             +G D I    +A     +
Sbjct: 1076 GIGVDLIYGEVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+T+ K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTKVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|194436365|ref|ZP_03068467.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1]
 gi|301026358|ref|ZP_07189805.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|194425093|gb|EDX41078.1| sensory box-containing diguanylate cyclase [Escherichia coli 101-1]
 gi|299879714|gb|EFI87925.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|323961756|gb|EGB57358.1| GGDEF domain-containing protein [Escherichia coli H489]
 gi|323972783|gb|EGB67982.1| GGDEF domain-containing protein [Escherichia coli TA007]
          Length = 1105

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISISLPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|311278588|ref|YP_003940819.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
 gi|308747783|gb|ADO47535.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
          Length = 752

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 177/436 (40%), Gaps = 18/436 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+   + +   AF D L  +PN ++    L                +  + I + + +
Sbjct: 317 TQQRLIHQRVKRMAFIDPLVHMPNLRALSRALAA---------TPWSVICFLRIPELEVL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +      +L + + + L+  + + ++SG+   I + ++ +  +I      + K
Sbjct: 368 GRHYGMMLRIQYKQTLAQWLNDFLQPGECVYQMSGHDLVIRMNTDAHQKRIEAL-DILVK 426

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN--AELAMYHAKHRGGNHVESFRV 697
                 + +  +  V  S  +       +       +  A+L++  +         + R+
Sbjct: 427 KFRFIWDGMPLQPNVGISYCYVRSPVLHLPLLLGELSTIADLSLTTSHPESLQRSSAMRL 486

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                D++ +   L LA+E     L+  PI+ +  ++    E L++    +   I    F
Sbjct: 487 QQRLKDKIAMMNRLQLALEEGRFRLMAQPIVGIRGDD--YYEILLRMVGDQGELIGPDAF 544

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +A E  +   I+++++E   R +   RD      + + IN++   + +      ++AL
Sbjct: 545 LPVAHEFGLSSRIDMWVVENTLRFMSEHRDALPG--LRLSINLSPSSVCNTHFPRSVEAL 602

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++       ++    +ES  + +P ++   L +L  +G  + +DDFGT  +  + L  + 
Sbjct: 603 LATYGVEAWQLIFEITESQSLNHPAQAYQTLEQLHLLGCRIAIDDFGTGYASYARLKEVN 662

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +GS +           I+ SI  +A+  +  ++A+ +  E        +G DY+
Sbjct: 663 ADILKIDGSFIRNLASSSLDHQIVTSICHLARMKKMQVVAEYVETEEMRAAAIALGIDYL 722

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P    +++ 
Sbjct: 723 QGYCIGKPAPLEALVA 738


>gi|71909366|ref|YP_286953.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71848987|gb|AAZ48483.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 561

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 151/357 (42%), Gaps = 6/357 (1%)

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASW 663
             D         + ++L   +++ + A  A  +R++   P+ L   R I++  +IG A  
Sbjct: 206 PQDKAFIGHEGEWLLVLPDVHSAAQPALAAAQIRRAFGHPLVLLSGRGISLDVAIGAAMS 265

Query: 664 TSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
                 + E+++ A LA    +       +   R+         + E+L  A+    L L
Sbjct: 266 PEHGSDAEELIQAARLARASLQSSNEPFAMYDLRMKEDWQSHHQLSEELREALRKDVLSL 325

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
              P + +  +   G E L++W       ++ S  + + EE         +++    R  
Sbjct: 326 HLQPQVDVESDRCFGAELLLRWQRSNGDWVAPSLVVEMIEEYGWRAQFTEWLIRSALRLS 385

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                      I + +N+ + DLLD +L E +   +        R     +ESV+M + E
Sbjct: 386 AELDAAG--VDIRLSLNLTAGDLLDTDLPELVAQCLETWRLPAERFTFELTESVMMVDRE 443

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILR 900
           R   ++ +LR +G+ L LDDFGT  S LSYL  +P + +K + S + G   + + + I+R
Sbjct: 444 RGLSVMSKLRAMGVKLALDDFGTGYSSLSYLVTLPLNEIKIDRSFVVGMFSSIEDLRIVR 503

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +II +  ++    +A+ +   I   +L  +GC  +Q      P+ F   +   + R 
Sbjct: 504 TIIDLTHDLGMVSLAEGVEEAIQRDQLLALGCTKVQGYFYGKPMPFADFVAWHRARQ 560


>gi|264677031|ref|YP_003276937.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
 gi|262207543|gb|ACY31641.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni
           CNB-2]
          Length = 593

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/451 (23%), Positives = 205/451 (45%), Gaps = 24/451 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E           +F D LT +PNR+  LDRL+  +  S      R  ++ ID++      
Sbjct: 142 ELLPHGNEAESLSFFDVLTNLPNRRLLLDRLSQAMIQSERT-GWRGALLTIDMEP----- 195

Query: 581 DVLGIAV--GDD---VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----I 630
            V G A   GD    +   + +R+   ++  D +ARL    F I++   +  ++     +
Sbjct: 196 -VAGPAASTGDSQSCLAPHIAQRLLGCVRSCDTVARLDAAHFVIMVSDLSPDIEMTTVLV 254

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                 +++S+     L  + + + A+IG   +     +++E+L+ AE+AMY  +     
Sbjct: 255 ERLGERLQESLNGSYQLGHKSVMLEANIGATLFGPHSRSATELLQQAEVAMYRLRDEEAR 314

Query: 691 HVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            +  F        +DR  +++DL  A+   +  L Y         E+ GLEAL++W HP+
Sbjct: 315 GLHFFSPEQQVPANDRSRLEQDLREALRLGQFELHYQAQYS-ASGEVNGLEALLRWRHPR 373

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G +    F+ +AEE  +I A+  + ++     +  W+ +  +  + I +NI++K L   
Sbjct: 374 RGLVPPRIFLSVAEETDIIVALGRWSIQAACEQLARWKAEPQLDRLPICVNISAKQLRQA 433

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L E +Q+++S+T   P+ + L  S   +      S   L R+  +G+ L+LDDFG   S
Sbjct: 434 DLAEQVQSILSQTGADPALLLLELSAQTLSPLDADSASSLKRIGAMGVRLSLDDFG-GSS 492

Query: 869 LL-SYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            +   L  +P + +K + SL+          A +++ I +A   + TI+   +       
Sbjct: 493 NMQEALHQLPLNQLKLSHSLVQRLGPNNAAEAAVQAAIALAARHQMTIVGAGVETLEQRA 552

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            L + GC++     ++ P   + +  L++ +
Sbjct: 553 LLAQHGCEHFMGYLLSPPAPVSQLKSLMQRQ 583


>gi|148358233|ref|YP_001249440.1| diguanylate cyclase/phosphodiesterase domain 2 [Legionella
           pneumophila str. Corby]
 gi|296105586|ref|YP_003617286.1| diguanylate cyclase/phosphodiesterase domain 2 [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280006|gb|ABQ54094.1| diguanylate cyclase/phosphodiesterase domain 2 [Legionella
           pneumophila str. Corby]
 gi|295647487|gb|ADG23334.1| diguanylate cyclase/phosphodiesterase domain 2 [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 537

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 206/444 (46%), Gaps = 23/444 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                +   +  D+LT +PN +   +++   ++           V+VI I+    +N   
Sbjct: 105 NLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGLQG--ELAVIVIKIND---LNYNF 159

Query: 584 GIAVGDDVLVSLTRRIGELLKFP---------DILARLSGNRFGIILISENNSLKIADFA 634
                ++++     ++  +L  P         +++ARL  + F I++      L I +  
Sbjct: 160 SSFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELL 219

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VE 693
           I +   +   + +    I VT+++G A + +       ++ +A +A+Y A+    ++ + 
Sbjct: 220 IHLLTLLNNNLMVDGISINVTSTVGAAIYPAHGEEDDVLVNHAIIAVYQARKENKSYAIY 279

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           S  +        ++  +L  ++EN +L + Y PI+ L + +IVG E+  +++HP+ G +S
Sbjct: 280 SPEMEEDLIQNRIVMNELQRSIENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLS 339

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           + +FM + E   +I  +   ML+ + + + +W D  +   IF+ +N++       EL E 
Sbjct: 340 AEKFMPLIEGTSLIHNLTTLMLKEVIKQLAAWHDAGH--KIFVSVNLSVHH----ELPEL 393

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ L++    +P  +KL F+E   +     ++ +  RL  +GI L +DDF ++ S   +L
Sbjct: 394 IEKLLNDYEIAPEFLKLEFTERACLTEQMVTKEVFDRLSTMGIKLCIDDFCSENSSFIHL 453

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P + +K   S +       K+  I+ +I+ +A+ +    +A  I  +  +++L  +G
Sbjct: 454 TNFPIENIKIEKSFVLKIAKDAKKAKIVEAIVKLAQTLGWEPLADGIADQNALEKLRDLG 513

Query: 932 CDYIQDSHVASPLGFNSILKLLKE 955
           C Y Q  + +  +       LLK+
Sbjct: 514 CLYGQGLYFSRAVNVAEFTSLLKK 537


>gi|87119942|ref|ZP_01075838.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Marinomonas sp. MED121]
 gi|86164644|gb|EAQ65913.1| Signaling protein with a sensor domain, HAMP, GGDEF and EAL domains
           [Marinomonas sp. MED121]
          Length = 871

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 185/448 (41%), Gaps = 18/448 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID------ID 574
           ++    + +L  A  D ++ +P +   L     +      D      ++  +      + 
Sbjct: 409 QRVHVEKHMLFQATHDPVSHLPKKDVLLTNWPKLSADIPADYCTSAVLIHFEGYYAQVLS 468

Query: 575 KYKKINDVLGIAVGDD---VLVSLTRRIG-ELLKFPDILARLSGNRFGIILISENNSLKI 630
             +++ + +   + D    +L + ++ +  +     D    L      +ILI+ N+   I
Sbjct: 469 FGQQVAESMVHELHDRIRRLLGNKSQYLKLDYQWSQDRAVVLDSLDLCLILITPNDYD-I 527

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +D    +  S++ P       + +  +IG +           +++ A++A   A  R   
Sbjct: 528 SDELNWLHTSLSGPFKYESLFLDIDLTIGVSKL-HDLEKVDRVIRRAQVASKEASQR-RL 585

Query: 691 HVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
            V  +     +   +   I   L +A+++  L L + P I     E+ G+EAL++W   +
Sbjct: 586 KVLHYHNKLGQDPELTGIIMSKLKMALDDDSLELAFQPQINTHTGELFGVEALVRWHDEE 645

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I    F+ IAE+  +I A+  F++                  + I IN+++++L D 
Sbjct: 646 LGWIPPDLFVPIAEQCRLITALTAFVVRESCAFYQRNYKNTGQE-LPISINLSARNLSDE 704

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  +I +    P  +    +E+ ++G+ E+SR  L  L  +G+ + LDDFGT  S
Sbjct: 705 FLIQEVSRIIEEYQVPPRLVTFEVTETAIIGDIEKSRNALEDLLDLGVKMALDDFGTGYS 764

Query: 869 LLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  +PF  +K +   +      +   +++ + + + K +   +IA+ +      K+
Sbjct: 765 SLVYLKELPFTELKIDKGFLVKDDKAQHNASLVEAAVLLGKTLNMEVIAEGVESLEMAKQ 824

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLK 954
           L   GC   Q  + A P+         K
Sbjct: 825 LAGYGCQLCQGFYFAKPMSETDFRLWYK 852



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/402 (12%), Positives = 114/402 (28%), Gaps = 19/402 (4%)

Query: 12  EKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGI 71
             A L  +LF +     S     IN S+ D  +D            +D  +     +   
Sbjct: 7   RVAILAGILFAVLFFVWSLNEHRINKSNIDYAIDYQVYIS-----DDDLSLNDIIALPVN 61

Query: 72  SR-----RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRR 126
                    +  +        W    L         + +V+ +  L    F+        
Sbjct: 62  DWHSPTQSSDALSFGYSRSSYWIKLPLFGRIKP--GQFLVINYPLLDEIDFYQVAANQVV 119

Query: 127 IISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNFYKDT 184
               T       +R     +  F +  +        + I +       +Y  +     + 
Sbjct: 120 RHEKTGDARPFDNRRVKVSNFAFALA-DDVDESNIYLRIKSSGTLKVPLYFEQYEDLIED 178

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-V 243
             + TLY G   G   L+ +   I   +N     +         LG      G L +   
Sbjct: 179 EAAETLYTGAFSGYMGLMILMSLIIVAINSDKNYLLYGIYILANLGLTLNLHGLLFRWIW 238

Query: 244 NLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKV--GYITFSGIACIAILFCMSF 301
                   +        L    ++F+  Y+     + K+    +  + +  + I     +
Sbjct: 239 PSAPEWNQVSTNLFSYTLIYFQLVFVCSYIKLENGYVKIASDVLKMAAMVGLMISLIPQW 298

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERA-VLLIPAWILIFIWFIGLWMAITK 360
           Y P+   S   I  A+   +Y     +   K   +  +    AW+++ +    + + +  
Sbjct: 299 YMPLSKISGVFILFANFFCFYLAVGYWFNNKSQLKGEMYFALAWLVMALGVSVVVLGVYG 358

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFS 402
            L +  +         ++ I    T +     +   ++ + +
Sbjct: 359 VLPSTPLVNNANMIASVLEIFFLSTAMICRFESERQARILAT 400


>gi|121586983|ref|ZP_01676762.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121548818|gb|EAX58863.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
          Length = 818

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 96/561 (17%), Positives = 195/561 (34%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H      +  +        
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ--HFYVDMWRQLREQ- 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 -GGWSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F  +L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSAQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRL 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|83648061|ref|YP_436496.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83636104|gb|ABC32071.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 698

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 87/559 (15%), Positives = 218/559 (38%), Gaps = 21/559 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHI 458
           +    +R +L +  S D +   +     V        + G      +       +  +  
Sbjct: 140 LREAEKRCNLLLESSMDAIAYIN-EGMHVFANKAYLDLFGYEDIDELMCIP--VMDVLSS 196

Query: 459 NDRDNFRTILDSF--VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             ++ F+  L +F      +   +    +R +D+    ++I     +  +G+    I + 
Sbjct: 197 GSQEPFKDFLKAFNDAQQNQQHKELTCTIRKSDDSEVEVVISCS-QATYDGEACTQIIVR 255

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            ++  +    E +   + +D LTG+ N+  F++ L   +D +  +++L+ +++ +++D +
Sbjct: 256 PEVDPE--LEEKLRKFSSEDLLTGLYNKVHFMEHLEGAIDKA-LNNDLQGSLLYLELDDF 312

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
               +  GI   D +L      +  +      LARL  + F I+    ++          
Sbjct: 313 STARNDYGIPGSDSILGDFANMLKSICPENYSLARLGDDTFAILATQVDDKGSEQLAENI 372

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA-------KHRGG 689
            +++      + +R   VT SIG A    +   + +++  A  A  H        K  G 
Sbjct: 373 RKQTEEHLFEVGDRTAQVTVSIGIARINENAPKAEDLMSRAHRACSHIHSLEGKKKGNGV 432

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
               +    + +     +   L  +++N    L++ PII L  E     EA ++  + K 
Sbjct: 433 YLYNAVDFDATQPLDEDMVAVLQRSLDNGRFRLLFQPIIGLRGEGEEHYEAFLRMLNDKN 492

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             IS SEF+ I     +   ++ +++ +  + + + R + +   +F+  NI    +LD  
Sbjct: 493 EEISPSEFLPIDSNAELAIKLDRWVILQNIKSLSAHRAKGHDTKLFL--NITPYTVLDKT 550

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
             + +   +         +    +E   +   ++++     ++++G  +++  FG   + 
Sbjct: 551 FVQWLGLALKAAKLPGGALIFQIAEENAIEYLKQAKEFAAGIKRLGGKISIGRFGCALNP 610

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            + + ++  D +K +GS        E+    L+ +I   + ++   +   +     +  L
Sbjct: 611 FNTIKHVECDYIKMDGSFTEEIQKDERSKEKLKEMITQLQELKKLTVVPFVENASVLSTL 670

Query: 928 TRMGCDYIQDSHVASPLGF 946
            + G +YIQ  ++  P   
Sbjct: 671 WQAGVNYIQGYYLQEPSPE 689


>gi|300697844|ref|YP_003748505.1| diguanylate phosphodiesterase (signal transduction EAL domain)
           [Ralstonia solanacearum CFBP2957]
 gi|299074568|emb|CBJ54119.1| putative diguanylate phosphodiesterase (signal transduction EAL
           domain) [Ralstonia solanacearum CFBP2957]
          Length = 439

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 168/414 (40%), Gaps = 29/414 (7%)

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-----ILARLSGNR 616
                 +++I  D + +    LG     +V+V    R+  L          ++ R+    
Sbjct: 7   SGGVGALLLIGFDHFAEAAASLGPLAARNVMVECASRLQALCPQSAGDAAPVVGRIGPET 66

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +   +  ++  + D A  +  S+  P      E+  + SIG   +      ++ +++ 
Sbjct: 67  FAVASATFASAQAVHDLARRISASLTRPFITAGYELVCSCSIGMTMFDGPPADAARLIEQ 126

Query: 677 AELAMYHAKHRGGNHVESFRV----------------SSFRSDRVMIKEDLCLAVENSEL 720
           A+ A++H +H G      +                  +   S+   +   L  A+   + 
Sbjct: 127 ADRALFHVQHGGEQSPAMYAPAAPVPGTEGGAASAGANDPVSEHPRLAAQLRHALTRRQF 186

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   P + L++ +IVG E L++W  P+ G ++ ++F+ I E+   I+ +  ++L+  A+
Sbjct: 187 SLNLQPQLSLVNGQIVGYEFLLRWISPELGGVAPADFLPILEQTGGIREVGRWVLDNAAQ 246

Query: 781 DIISWRDQ-------ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +   + +       A  P +   +N++   LLD +L + ++ + ++     +R+    S
Sbjct: 247 MLAGLQQEEAERAGTARQPDLLAAVNLSDAQLLDPQLSDTVRDIAARHAVPTTRLVFEVS 306

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-ST 892
           E  ++   E +R  +  L   G  + ++DFG     L  L     D VK +  +++  + 
Sbjct: 307 EHTLLRAGEAARQAVDALHGCGARVAVEDFGATAHSLDCLAQFRPDLVKLDRCVVSAVTD 366

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + LR ++  A +    + A  +     ++ L    CD IQ   ++ P   
Sbjct: 367 AGDDSALRHLVAAAHDAGVPVTATRVETAAQLQALRACRCDVIQGYLLSQPFPA 420


>gi|218291245|ref|ZP_03495229.1| diguanylate cyclase with PAS/PAC sensor [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238847|gb|EED06058.1| diguanylate cyclase with PAS/PAC sensor [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 493

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 163/383 (42%), Gaps = 18/383 (4%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
              +      G + ++   +  T +   +A         S  ER +     +   ++ +D
Sbjct: 103 QTWVWSSGAGGLVCVVTDHVRDTEMYAEVAQS------RSFIERIA---DAADICLFAYD 153

Query: 423 IVRDR-VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           +  +R +  +    ++ G +S  +      WL ++H +D       + +         + 
Sbjct: 154 VASNRLIYASNACESMCGYSSDELANNPHLWLSFVHPDDLALATEPIRT-----GSGARS 208

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           E+R+R  +    W+ + + P  +++G +    G+A DIT++K     +   AF D LT +
Sbjct: 209 EYRIRHRNGTERWVAVHLYPRFDADGRVTYLEGLAMDITDRKVHQVELQRLAFTDALTRL 268

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNRQ F   L   ++ +      +  V ++D D +K +ND  G   GD  L ++  R+ +
Sbjct: 269 PNRQQFEHDLRAAVEQAERRGE-KVAVFLLDFDGFKYVNDTFGHQFGDATLKAIAERLQK 327

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
            L     + R+ G+ F +I         + + A    ++   P+ ++   + +  SIG A
Sbjct: 328 ALCGRAKVYRMGGDEFTVIQAGIAGEADVRETAARCVEAFREPLEVMGESVPLGISIGAA 387

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSE 719
            +         +L+ A+++MY AK +GG+ +  +  S      +R+++   L  A +  E
Sbjct: 388 IYPDHSRDVDALLRYADISMYAAKEQGGHRLCLYSESGDSAIHNRLLLHNALAKAFDRGE 447

Query: 720 LYLVYHPIIRLMDEEIVGLEALI 742
             L Y PI  +     VG EAL 
Sbjct: 448 FSLDYQPIFDVRRGVWVGAEALC 470


>gi|300899776|ref|ZP_07117996.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300356655|gb|EFJ72525.1| PAS domain S-box [Escherichia coli MS 198-1]
          Length = 1105

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHQVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISISLPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|220935449|ref|YP_002514348.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996759|gb|ACL73361.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 450

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 3/309 (0%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            Q +       Q +     +    V  + DI++      +    +P+   +LG       
Sbjct: 140 AQDITERKLLEQDLRLSEAKFRTLVENANDIIYTLTPEGELSYISPNWQDVLGYEVEPFI 199

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           G   ++ P IH ND D  R  + +     + +   E+R+R AD  + W      P+ +  
Sbjct: 200 GH--SYEPLIHPNDLDRTREFMRAVFTTGKKQSGVEYRIRHADGSWRWHTSNASPVLDEA 257

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G +  Y+GIA +ITE+K+    I   A  D LTG+PNR  F DRL   +D ++ +   + 
Sbjct: 258 GRVSAYLGIAREITERKQQEAQIHHLAHHDLLTGLPNRAMFFDRLEAAIDEASAESR-KL 316

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M +D+D++K +ND  G AVGD +L ++  R+  +L+  D++ R+ G+ F ++L     
Sbjct: 317 ALMFVDLDRFKPVNDRHGHAVGDQLLQAVAGRMHTILRAGDLVGRIGGDEFIVLLHDIRT 376

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                  A  +R  +  P ++  R + ++ASIG A + S    + E+ + A+ AMY +K 
Sbjct: 377 EDDALTAAEKLRCHLETPFDIEGRRLQISASIGIALYPSHADNARELARRADEAMYLSKA 436

Query: 687 RGGNHVESF 695
            G N    +
Sbjct: 437 EGRNLTTLY 445



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 9/147 (6%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              + H L      + +  +       +  S +  +           +  +  +  +   
Sbjct: 17  AVEVLHKLRDARELESVIHNLPGFLYELRQSPNGSF------RFTYLSRRVEEMFHIRVE 70

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
                    L  IH +D       +     +  G    + R+   D +  W+        
Sbjct: 71  DALADANVLLGMIHADDLHVIEDSIRHA--HIDGTSCTDMRMIRPDGRMFWIEAYDTLHF 128

Query: 504 NSNGDILRYIGIANDITEQKKSLEGIL 530
              G ++ + G A DITE+K   + + 
Sbjct: 129 PPEGGVI-WTGYAQDITERKLLEQDLR 154


>gi|332092444|gb|EGI97517.1| hypothetical protein SB521682_1200 [Shigella boydii 5216-82]
          Length = 1105

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTLNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L +          ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCSNVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEALNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/293 (10%), Positives = 86/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +         +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEALNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|253773001|ref|YP_003035832.1| sensor protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|242377718|emb|CAQ32479.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253324045|gb|ACT28647.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253978154|gb|ACT43824.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli BL21(DE3)]
          Length = 1105

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHQVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISISLPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|169796501|ref|YP_001714294.1| hypothetical protein ABAYE2469 [Acinetobacter baumannii AYE]
 gi|215483966|ref|YP_002326191.1| EAL domain protein [Acinetobacter baumannii AB307-0294]
 gi|301347768|ref|ZP_07228509.1| EAL domain protein [Acinetobacter baumannii AB056]
 gi|169149428|emb|CAM87314.1| hypothetical protein ABAYE2469 [Acinetobacter baumannii AYE]
 gi|213987324|gb|ACJ57623.1| EAL domain protein [Acinetobacter baumannii AB307-0294]
          Length = 273

 Score =  284 bits (726), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 121/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 3   CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 61

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L +  + +  W  +     + + INI++   + +  
Sbjct: 62  YIPTKEFIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 121

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 122 EHTVIGLVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 181

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 182 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 241

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 242 SNGCTEFQGYLWGCPMSLNDFIKQL 266


>gi|87200340|ref|YP_497597.1| diguanylate phosphodiesterase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136021|gb|ABD26763.1| diguanylate phosphodiesterase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 760

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 176/415 (42%), Gaps = 19/415 (4%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+PN          ++ LSAT   +   V+V  I +Y++I   L   +  +    + RR+
Sbjct: 349 GLPN----------LIALSATSFEVGRDVVVAVIARYEEILATLPKELHGECAKQIARRL 398

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +    + +    G  F     +    +++      +R   + P+ +           G
Sbjct: 399 -SVGSGIETIFNGEGGHFAWTEEARPLEMQLNHLEG-LRALFSAPLEIGAYTFDTNIHFG 456

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENS 718
                +  + +   + +A  +   A + G +         +  +  + +   +   + N 
Sbjct: 457 LD--RNEGLDALTRVNSALASANDALNSGRSVELFEADRLAEATWELSLHARIDEGLRNG 514

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           E++L Y     + +    G EALI+W+HP  G I+   F+L AE    I A+  +++E  
Sbjct: 515 EIWLAYQSQWDMREGRPCGAEALIRWNHPTRGPIAPDAFILQAERAGRIDALTYWVIEEA 574

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
               ++        P  + +N++++ +   +L   +  ++ +    P  + +  +E+  +
Sbjct: 575 ITAALALNA--GGQPFQMSVNMSAQMVDKPDLVPSIWEIVQRRKIDPGLLTIEITETSSV 632

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRI 896
            N   +   L RLR +G+ L++DDFGT  + L+YL  +P D +K +   ++   + E+  
Sbjct: 633 RNRPAAVQNLTRLRDMGMRLSIDDFGTGEASLAYLADLPSDELKLDRRFVSRVLTHERER 692

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            I++S I +A  +   ++A+ I  +   + L  +GCD  Q   +  P  F  + K
Sbjct: 693 LIVKSTIELAHALGQAVVAEGIEDDATYRMLRSLGCDVGQGYFLGRPQPFAELRK 747


>gi|37680324|ref|NP_934933.1| GGDEF family protein [Vibrio vulnificus YJ016]
 gi|37199071|dbj|BAC94904.1| GGDEF family protein [Vibrio vulnificus YJ016]
          Length = 822

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 216/561 (38%), Gaps = 44/561 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFR 465
              A       +   D     +          G     + G   + L    H ++   F 
Sbjct: 129 FRQAFDNDHHGILLTDAATQILLCNRYFENHTGYKLNQIIGQCASILDSGKHSDE---FY 185

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   V   +G  Q    +R          + ++ ++  +   + Y+G+  D +++   
Sbjct: 186 QSISEEV-NSKGLWQGVVLIRTFGGAIVPQELTLQKLTCDDK--VYYLGLYVDFSDRLYR 242

Query: 526 LEGILC----NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           L  +            LT +P  + F  +LT  +    ++++    V+   +  +     
Sbjct: 243 LADMEHGGVEL-----LTQLPTEKQFTQQLT--VRWMDSNNDDLLMVLAF-LPNF----- 289

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP---DILARLSGNRFGIILISENN--SLKIADFAIA 636
               A GD+  +   +R+ E L+       +  L GN F   +    +    ++      
Sbjct: 290 ----AAGDEYELK--QRLSESLEKNRVSSAVGYLGGNHFVAAIECNKSQGPNQVQIIHQT 343

Query: 637 MRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +RK  A   +L   E+    +   +G +           M+ +A  AM     +    + 
Sbjct: 344 IRKFFAQLTHLSGEEVQNALLRGKVGVSILGHDTQNPKVMVSHAVQAMLEHDGQHKGMIT 403

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S  R    R  ++E +  +++   + + Y PII     +I   EAL ++       
Sbjct: 404 FYHGSIHREVLRRRELEELVVRSIKEESVEVFYQPIIDTATWDIAKFEALCRFKDKHGQW 463

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNEL 810
            ++ E + IAEEL M+  ++  + ++  + + S  ++     I I IN +    L   E+
Sbjct: 464 QNTQELVGIAEELEMVADLDWTVGKKSLQGLKSIHERFG-TRIGITINRSLNTKLGAEEV 522

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            +  + +I     +P  + +  +ES    +      L+ R+R +G+S+ +DDFGT  S  
Sbjct: 523 LQNAEQMICLYCDTPELVTVELTESAYFDSESSQSELIKRIRNMGVSVAIDDFGTGYSSF 582

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL    FD +K +   +T       +  I+R I  ++  +   ++A+ +  + +++ L 
Sbjct: 583 TYLSDCNFDLLKIDKEFVTDIHVGTHKYHIVRMITELSHTLNVKVVAEGVETKQELEVLC 642

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
            +G DYIQ    + PL  + +
Sbjct: 643 GLGVDYIQGYFFSKPLPLDQL 663


>gi|260598878|ref|YP_003211449.1| Inner membrane protein YfgF [Cronobacter turicensis z3032]
 gi|260218055|emb|CBA32781.1| Inner membrane protein yfgF [Cronobacter turicensis z3032]
          Length = 496

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 167/437 (38%), Gaps = 22/437 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A  D L+ +PN ++    L                +  + I + + +
Sbjct: 67  TRQRAMHLRGRRLALIDPLSHMPNLRALNRDLGKA---------PWSVLCFMRIPELELL 117

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       +   + ++L   ++  +LSG+   + + +E+   +I      +R+
Sbjct: 118 GRNYGVMLRILYKQQMAAWLRQILLPDELAYQLSGHDVVLRIHTESYLERIDALDKRVRQ 177

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEML----KNAELAMYHAKHRGGNHVESF 695
                       +     I ++   S       +L      A+L++   +        + 
Sbjct: 178 F---RFMWDGMPLQPQVGISYSFVRSPVTHLHLLLGEMSTMADLSLATNQPESLQCRGAN 234

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V      +V +   L  A++N    L+   I  +  +     E L++        I+  
Sbjct: 235 HVQKAVKLKVDMLNRLQQALDNHHFRLMAQRIEGMRGDS--YYEILLRMRGDDGELIAPE 292

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +   I+L +LE   + +  WR+Q         IN+    +        +Q
Sbjct: 293 IFLPVAHEFGLSSRIDLMVLESTLKFMDEWREQLPAS--RFSINLTPATVCRVPFPGEVQ 350

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES    N E++++ L RLR +G  + +DDFGT  +  + L  
Sbjct: 351 RLLARYHVEPWQLIFEITESQSFTNVEQTQVTLSRLRAMGCRIAIDDFGTGYASYARLKS 410

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           I  D +K +GS +     +     I+ S+  +A+     ++A+ +  E        +G D
Sbjct: 411 INADILKIDGSFIRNIVTSSLDYQIVESMCHLARMKNMQVVAEYVESEEIKNVACSLGID 470

Query: 934 YIQDSHVASPLGFNSIL 950
           Y+Q   +  P    S++
Sbjct: 471 YLQGYVIGKPQPLESLI 487


>gi|254162059|ref|YP_003045167.1| putative sensor protein [Escherichia coli B str. REL606]
 gi|253973960|gb|ACT39631.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli B str. REL606]
          Length = 1101

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 538  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 597

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 598  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 656

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 657  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 715

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 716  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 775

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 776  IATRIISAVNDYHFIWEGRVHQVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 835

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 836  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 895

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 896  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISISLPLSVAGLSS 952

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 953  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1008

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1009 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1068

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1069 TLSGIGVDLIYGEVIADAQPLD 1090



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 145 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 203

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 204 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 252

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 253 LATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 312

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 313 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 370

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 371 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 423



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 185 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 244

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 245 MMAADPSLLATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 304

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 305 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 364

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 365 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 424

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 425 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 483

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 484 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 541

Query: 525 SLE 527
             E
Sbjct: 542 LNE 544


>gi|302670208|ref|YP_003830168.1| GGDEF/EAL/PAS domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394681|gb|ADL33586.1| GGDEF/EAL/PAS domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 552

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 93/543 (17%), Positives = 207/543 (38%), Gaps = 30/543 (5%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           V+ +D+ ++    + +     GL    ++     W   IH +DRDN+   + +    ++ 
Sbjct: 25  VYVFDMGKNISRWSLNAVDYFGLTGEYIYNASSVWENRIHPDDRDNYNEYIQASFAGKKV 84

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E+R R  + ++     R   + +  G  + Y     +    K  ++        D 
Sbjct: 85  NPNIEYRARNKNGEYVVCSCRGVVIKDYAGKPVFYACSIIN----KGIVD------NNDP 134

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           +T +PN    L+ +  +             +++++   +  IN   G A+G+++L +  +
Sbjct: 135 ITLLPNHYEMLNHMRQL-----KLKKKEYAILMMNFMDFGDINRRYGYAIGNNILRATAK 189

Query: 598 RIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           ++ +  K    + R  G    +I  S      I  F   MR      + +  +++     
Sbjct: 190 KLIDEAKDIGKVYRGEGTTLALISESMT-IDDIKKFYGRMRSFTRDALAIGGKKVGAEIG 248

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            G       ++    +  +A+ A+  +KH+  G   +        +   + + + +  +V
Sbjct: 249 GGVILAADFEVDEHSIYTSAKYALNFSKHQRHGNLIIFHNDELDNKKSNIDMVDAIRNSV 308

Query: 716 ENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
            N     YL Y PI+  +D  +VG+E  ++W    +G++S +EF+   E   +   +  +
Sbjct: 309 INGMEGFYLEYQPIVSSVDGRLVGMEVFVRWQKEPFGSVSPAEFVPWLENDQVFYNLGNW 368

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +LE   RD +  R +      ++ +N+A   L  +E    +  ++ KT Y  + + L  +
Sbjct: 369 ILENALRDALEIRMRL--KDFYLSVNLAFMQLERSEFRTTLIDILRKTGYPSTGLCLELT 426

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLD--DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
                 + E     +  L+  G+ + LD  DF    + L Y+  +P D V    +L    
Sbjct: 427 SGSRQLSIEHLESQVEFLKACGVKIGLDVTDF----ASLDYVRQLPIDLVNIVPALTENI 482

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +      ++ SI      +        I  E   +   +     +   +   P   +  
Sbjct: 483 GKNVTNKYVIESITSFTHRLHIRTCFTGIEDEETAQVAKQYPVSDLMGYYYGRPCKIDKF 542

Query: 950 LKL 952
            +L
Sbjct: 543 KEL 545


>gi|256372241|ref|YP_003110065.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008825|gb|ACU54392.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 806

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 191/446 (42%), Gaps = 18/446 (4%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           ++ + + +  +A +D LTG+ +RQ+FL R +  L+  A        V++ID+D+   +N+
Sbjct: 373 RRAATDALRESADRDPLTGVWHRQAFLARASERLE--AEGPRSGAYVLLIDLDQLWDVNE 430

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             GIA GD  LV     + E L    ++ R+ G+ F  +++   +S         M + +
Sbjct: 431 REGIAAGDRYLVRAVTGVLEALGPEAVVGRIGGDEFAALIVGTTSSRDFGTIRRDMLEVL 490

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                       V  S+G AS           ++ AE  +     R G        +   
Sbjct: 491 GAR--------GVAVSLGAASIQDG--DVLAAVQRAERDLVADLERRGVARVERVTAPLE 540

Query: 702 SDRVMIKEDLCLAVENSE----LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              + +  +L  A+E         +V+ P++ L   +I G+EAL +W+HP+ G +    F
Sbjct: 541 PADIALAPELVRALEGDREAGTFGVVFQPVVELATGQIAGVEALARWEHPRLGTVLPGRF 600

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IA  L +++ ++  +     R ++          + +  N++++      +   +  L
Sbjct: 601 LPIAVHLRLVERVDELVRALALRQVVELERTGVARGLRVSFNLSAESARRRGIASRLIEL 660

Query: 818 ISKTLYSPSRIKLSFSESV-VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           + ++  + +++ +  +ES       E+ R  L  L   GI + LDDFG   S   +L  +
Sbjct: 661 VERSGIAANQVVVELTESEIAASALEQLRRTLEALAGAGIKVALDDFGVGTSSFRHLATL 720

Query: 877 PFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
               VK + S +     K   ++L  ++ +A+ +   ++A+ +        L  +G    
Sbjct: 721 AVHEVKIDRSFVANVGTKNGSSMLDGLVSLARRLGVELVAEGVQDASTAARLLELGVPKA 780

Query: 936 QDSHVASPLGFNSILKLLKERFPLVK 961
           Q  +   PL    + ++L++R   ++
Sbjct: 781 QGFYFFRPLSPGGLARVLRQRRRALR 806


>gi|320106040|ref|YP_004181630.1| diguanylate phosphodiesterase [Terriglobus saanensis SP1PR4]
 gi|319924561|gb|ADV81636.1| diguanylate phosphodiesterase [Terriglobus saanensis SP1PR4]
          Length = 324

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 126/262 (48%), Gaps = 5/262 (1%)

Query: 705 VMIKEDLCLAV-ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             +   L  A+ ++  L L Y PI    +++I  +E L +WD    G IS SEF+ +AE+
Sbjct: 30  RRLAVRLEKALLDSIGLSLAYQPIFD-RNQQIAAVEVLARWDDAIEGPISPSEFIPLAEK 88

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I  +  +++         W DQ  +    + +N +   +   +  E +   + ++  
Sbjct: 89  TGLIVPLCKWVIREACLQTKRWLDQGFLLG-RLAVNFSVVHIWREDFVETIFEALRESGL 147

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
               ++L  +ES ++ + E+ +  L  LR+ G+ +++DDFGT  S L  L  +  D +K 
Sbjct: 148 PAQMLELEVTESALVLDFEKVKQHLQMLRRHGVRISIDDFGTGYSSLGRLRELDADVLKI 207

Query: 884 NGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   + G+ E+    A++++I+ +A ++  T++A+ +        + +MGC+ IQ   +A
Sbjct: 208 DKIFVQGADEEIRGAAMVQAIVNIAHSLGLTVVAEGVETVEQRNLVYQMGCEEIQGYLLA 267

Query: 942 SPLGFNSILKLLKERFPLVKNT 963
            P+    +  L+ +      + 
Sbjct: 268 HPMTPEELFILMSKHRNEAHSA 289


>gi|255021585|ref|ZP_05293628.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968973|gb|EET26492.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Acidithiobacillus caldus ATCC
           51756]
          Length = 611

 Score =  283 bits (725), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 198/495 (40%), Gaps = 38/495 (7%)

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC----NAFQDNLT 539
           R+R A  Q   +  + R   ++ G           I+ Q+++L          A  D++T
Sbjct: 133 RIRNAL-QTRLLHRQARQRLDAYGQT---------ISAQQQALAAREHDIAYLASHDSIT 182

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR      L ++      + +     ++I++    ++  + G    D +L     R+
Sbjct: 183 GLLNRHGLCRGLESL----TREGHKALVFLLIELSDADQLILLEGTQSVDYLLREAGTRL 238

Query: 600 GELLKFPDILARLS-GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
             L+     L  +  G  F  +     +   +      +  +I  P+      + +    
Sbjct: 239 ASLVGERGGLCGVWRGQTFLAVFPQTAD---LELEVDRIFDTIFAPLPFHGSHVVLHGRG 295

Query: 659 GFASWTSSKITSSEMLKNAELAMYH------AKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           G+A  T           NA L           +      +   R++   + R  I+  + 
Sbjct: 296 GYALVTDEGSGIDIQQSNAALRAAGLALASAHRLSNRALLYDARMAERFARRHRIERAMQ 355

Query: 713 LA--VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            A   +  +  L Y P + +    +VG EAL++W HP  G IS +EF+ IAE+   I+ +
Sbjct: 356 EALQTQAEQFQLAYQPKVDIHGHRVVGCEALLRWHHPTLGTISPAEFIPIAEDTGAIEIL 415

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDL-----LDNELCEGMQALISKTLYSP 825
            L +++R+   +           + I IN++++           L   ++   +      
Sbjct: 416 GLLVMDRVFAFLSRRLQHGPWT-LPIAINVSARQFELMRARGMSLVNAIETRRAHYRIPR 474

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I+L  +ES ++ + +     L +LR   I + LDDFGT  S LSYL  +P +T+K + 
Sbjct: 475 GLIELEITESSLLTDFDWLVTQLEQLRDNAIGVALDDFGTGYSSLSYLRNLPINTLKIDR 534

Query: 886 SLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S + G+        +L +I+ +A++++   +A+ +    D+  L  + C   Q  + + P
Sbjct: 535 SFVDGAARDSRQAFLLSNILHLARDLKFVSVAEGVETLGDLDLLRDLSCAIAQGYYFSRP 594

Query: 944 LGFNSILKLLKERFP 958
           L    +L  L    P
Sbjct: 595 LSEPDLLAWLAAFPP 609


>gi|120555696|ref|YP_960047.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Marinobacter aquaeolei VT8]
 gi|120325545|gb|ABM19860.1| diguanylate cyclase/phosphodiesterase [Marinobacter aquaeolei VT8]
          Length = 694

 Score =  283 bits (725), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/581 (15%), Positives = 225/581 (38%), Gaps = 18/581 (3%)

Query: 375 LVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            +++V+      +            +    +R  L +  S D +   +     +      
Sbjct: 115 QLVLVVKRELAALDERRKRRVLESHLREAEQRCQLLLESSKDAIAYIN-DGMHIYANQSY 173

Query: 435 ATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
              LG      +       L  +    ++ ++  + +F   R+  +      R +D+   
Sbjct: 174 MEFLGYDDIDELICIP--VLDTLTPESQEKYKEFMKAFAEERKDGMTLNCTARRSDDHEL 231

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
            + + +   +  +G+    I +  + ++  +  E +   + QD LTG+ NRQ  +D L  
Sbjct: 232 NVTMSVSA-ATYDGEACTQIVLQPEHSDA-ELEEKLKQISSQDLLTGLYNRQYLMDALAQ 289

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +  +  D+     +  I +D +  +   +GI+  D +L  L   + E       LARLS
Sbjct: 290 AIATAGKDNKT-GALAYIALDNFLSMKSQVGISGADLLLGDLATLLREQTGDEVTLARLS 348

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASWTSSKITSSE 672
            + F ++ +   +   +      +RK++     ++  R + +T SIG A+ T +   + E
Sbjct: 349 DDAFCVMCLPC-DEASMESLCERIRKAVEDHLFDINGRTVPLTVSIGIAAITENSPKAEE 407

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE-----DLCLAVENSELYLVYHPI 727
           ++  A  A    K + G+   +  +    ++   + E      +  A++++   L++ PI
Sbjct: 408 LMGRAHTASADVKKQEGHERGNGILVYNPAEYESLDETNSVEAILKALDDNRFRLLFQPI 467

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           I L  E     EA ++  +     +S  +F+           I+ +++ +  + + S R 
Sbjct: 468 INLRGEGEEHYEAFVRMLNKDNEEVSPYDFLPPMGPSDTAIKIDRWVILQTIKQLSSHRS 527

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           + +   +F+  NI ++ L D      +   +         +     E       ++++  
Sbjct: 528 RGHDTRLFL--NITAETLQDKTFTPWLSVALKAARLPGDSLIFQIREGDANNYMKQAKDF 585

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
              + ++   +++  FG   +  + L +I  D VK +GS       +++    ++ ++  
Sbjct: 586 TKAVHELHSKVSISQFGCALNPFNTLKHIEADYVKIDGSFTEEIQKSDEAKEQVKEMVKS 645

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +N     I   +     +  L + G +YIQ  ++ +P+  
Sbjct: 646 LQNAGKLTIIPLVENAGVLATLWQAGVNYIQGYYLQAPVPE 686


>gi|13362345|dbj|BAB36299.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
          Length = 791

 Score =  283 bits (725), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 228 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 287

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 288 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 346

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 347 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 405

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 406 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 465

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 466 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 525

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 526 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 585

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 586 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFLQQAAKAVASKG---ISIALPLSVAGLSS 642

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      +  + E       +LR  G  +     G   
Sbjct: 643 ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVFSQVGRDL 698

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 699 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 758

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 759 TLSGIGVDLIYGEVIADAQPLD 780



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q      ER +LA    G  +W+W++  +  +    +  +  +
Sbjct: 91  LYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEI 150

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 151 PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALAN 207

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 208 RVLNKEGEVERLLGINMDMTEVKQLNE 234



 Score = 64.2 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN 490
              +   LG +   + G    +       D +     ++  +         E R    + 
Sbjct: 14  NKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNG 71

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 72  DVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 113


>gi|237732119|ref|ZP_04562600.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907658|gb|EEH93576.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 1109

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 110/567 (19%), Positives = 220/567 (38%), Gaps = 13/567 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+  +     P    + G    S  G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVICIDVDMNVTFMNPVAEKMSGWQQDSAIGIP-- 599

Query: 452  WLPYIHINDRDNFRTILDSF-VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L  +HI   +N   + + +     R  ++ E  +   +   + +   I P+S  +G  +
Sbjct: 600  LLTVLHITFGENGPLMENIYSADMSRTAIEQEVVLHCRNGNSYDIQYSITPLSTLDGGSI 659

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + +  D+TE +K L  +  +A  D+LT + NR SF + L  +L     D + +  ++ 
Sbjct: 660  GSVLVIQDVTESRKMLRQLSYSASHDDLTQLANRVSFENHLKQLLHTV-HDTHQQHALVF 718

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G A GD +L  L+  +  +L+  D+LARL G+ FG++L   N     
Sbjct: 719  IDLDRFKAVNDSAGHAAGDALLRELSSLMLSMLRSSDMLARLGGDEFGLLLPDCNIESAR 778

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                  +            R   + AS G          +S+++  A++A Y AK+ G  
Sbjct: 779  FISGRMISAINDYHFMWEGRLHRIGASAGITLIDEKNHVASDVMSQADIACYAAKNSGRG 838

Query: 691  HVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             V  +            ++ + E     + N  L +        + E        ++   
Sbjct: 839  RVFVYEPQQSQGHAARSQLTLDEQRHSILHNPMLMIARGVASPRIPETFSFWLLSLRLGT 898

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +   I    F     +  + +A++  +     +             + I + +++  LL
Sbjct: 899  AEGEIIEEHAFRAGLVDPTLNQALDRRVFTEFFQSAAPAVASKG---LSIALPLSAAGLL 955

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            + EL + +   + ++   P  + L+   +V+  NP ++   L RLR+ G  + L   G  
Sbjct: 956  NTELVDELLGQLQRSPLPPRLLHLTVPSNVIKTNPTQAISTLHRLRQCGCRIILSHVGRD 1015

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
              L   L Y   D +  +  L             +  I   A+ ++   IA  +   + +
Sbjct: 1016 LDLFDNLKYHMVDYLLLDSELSASVHGNLIDEMWVSIIQGHAQRLDIKTIAGPVQLPLIM 1075

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILK 951
              L+ +G D I    +A     + +L 
Sbjct: 1076 DALSGIGIDMIYGDIIADAQPLDLLLN 1102



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 24/171 (14%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+W++  D ++    +  +  + +  +    + W   +   DR+ 
Sbjct: 428 MERITLANEAGGIGIWEWELQPDVISWDKRMFDLYEVPAH-IKPSWQVWYECVVPEDREY 486

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              ++   +  R    + EFR+   D     +      + N +G++ R +GI  D+TE K
Sbjct: 487 AENVIRDSLAAR-APFKLEFRIAVKDG-IRHIRSLANRVLNKDGEVERLLGINMDMTEVK 544

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           +  E +                   +RL   LD           V+ ID+D
Sbjct: 545 QLNEALFQE---------------KERLHITLDSIGE------AVICIDVD 574



 Score = 78.8 bits (193), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 84/313 (26%), Gaps = 10/313 (3%)

Query: 220 PTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWH 279
              A    V+  +         L    S    +    SE   + +L+    ++    + H
Sbjct: 125 ARLAFGSAVVPPLLGGILMWLLLPKDTSLNTFLIWVLSESIGALALVPLGLLF----KPH 180

Query: 280 AKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
             + +     +    I   ++     ++          +++       +  ++       
Sbjct: 181 YLLRHRDPRLLLETLITLLVTLTLSWLSMMYIPWPFTCVIVLLM----WSAVRLPRMEAF 236

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           LI    ++ +  +              +   +     L+++L    +   + A     + 
Sbjct: 237 LIFLSTVMMVSLMLAADPSLLYTPKPNMMTDIPWLPFLMILLPANMMTMVMYAFRAERKH 296

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           I     R   A+  S   +         +     +   LG +   +      +       
Sbjct: 297 ISESESRFRNAMEYSAIGMALVGTEGQWLQANKALCQFLGYSQEEL--RSLTFQQLTWPE 354

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           D +N    L+            E R         W ++ +  + +S+   L +I    DI
Sbjct: 355 DLNNDIEQLNMLARGEINSYSMEKRYYTRSGDVVWALLAVSLVRHSDNTPLYFIAQVEDI 414

Query: 520 TEQKKSLEGILCN 532
            + K +       
Sbjct: 415 NDLKHTEWINKRL 427


>gi|317052040|ref|YP_004113156.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316947124|gb|ADU66600.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 699

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 179/419 (42%), Gaps = 35/419 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR      L      S        T  ++D+D +++IN++ GI+ GD +L  L
Sbjct: 290 DALTGMGNRARLARDL--AFVRSPR------TFCLVDVDGFREINEIFGISSGDILLQEL 341

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSL---KIADFAIAMRKSIAMPINLLEREI 652
            RRI E      ++ R SG+ F ++     +S     +      +  +   P  + + + 
Sbjct: 342 ARRIQEC-CEGGVVYRFSGDNFVVLCPRVEDSALSRYLETLHDCLVDNSHTPPAIADVQF 400

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFRVSSFRSDRVMIKE 709
            VT              +S  L   E+ M+HAK +      + E F         + I +
Sbjct: 401 NVTVV--------GTNEASNPLGRLEMTMHHAKAQRRNTLCYSEEFNAVQRYRQNIAITQ 452

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A++   ++ V+ PI  L   EI   E L++  H     +S  EF+ +A+   +   
Sbjct: 453 KIRQAIDEDSVFPVFQPICDLQSCEITKYECLMRIRHGD-EVLSPGEFLSVAQRSKLYPR 511

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ML +      +             IN++  D+++ ++ + +  L+  T ++ +R+ 
Sbjct: 512 LVGIMLRKSFAAFANNHYMF-------SINLSYADIVNEDIRQSIMDLL--TPHNAARVI 562

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
               ES  + N       + +++++G  + +DDFG+  S   ++  +  D +K +GSL+ 
Sbjct: 563 FEILESEGIDNYGEVSRFIQQVKELGCKVAIDDFGSGYSNFEHIMKLQVDYIKLDGSLVH 622

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           G     + + I+ SI+  A  +   I+A+ +  +  ++ + R+G  Y Q   +  P   
Sbjct: 623 GLRDDPRNLHIVESIVFFAGKVGIHIVAEFVSEQELVEIVRRLGIAYAQGYAIGRPEPE 681


>gi|320172674|gb|EFW47909.1| putative sensor protein [Shigella dysenteriae CDC 74-1112]
          Length = 1105

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 107/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H            
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESEIHFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 85.4 bits (210), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 86/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I         A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESEIHFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|254457925|ref|ZP_05071352.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207085318|gb|EDZ62603.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 521

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 184/436 (42%), Gaps = 30/436 (6%)

Query: 516 ANDI--TE-QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
             DI  TE  +   + +L   F D+LT  PN       L          DN +  ++ I 
Sbjct: 103 LRDIAITEDLRNCKKQLLSKYFTDHLTSFPNLYQLRKDL---------HDNEKFGLITIA 153

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           ID +  IN+  G  VGD ++  +   + E +     + R+SG  F + L        + D
Sbjct: 154 IDNFVTINNFYGFMVGDYIIEQVGNYLIENINEK--IYRVSGTEFTLYLEDNLGFYDLKD 211

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
           +   + + I   +++  +E  ++ S+  AS  +S      +     +A+ +AK       
Sbjct: 212 YMTNLYEKIKN-VSVTYQENEISVSLTMASCVNSSQD--NLFSKVSMALKYAKDNRLPFW 268

Query: 693 ES---FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
                 R  +     + I   +  AV+NS++   + PI+     +I   E L +      
Sbjct: 269 IYEDRMRFENEYEKNLNISNIVRHAVQNSKIVPYFQPIMDNKTSKINKYECLARLLDENN 328

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             IS S F+ IA+ + +   +   ++E+  +   +   +         IN++ +D++++E
Sbjct: 329 NVISPSLFIPIAKRIKVYNEVTKIIIEKSFKLFEANDYEF-------SINLSMEDIVNSE 381

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           +   +   +  +  + +R+     ES  + + E+    +  +++ G  + +DDFG   S 
Sbjct: 382 MFNFILQKLKLSS-ASNRVIFEIVESEAIQDFEKIARFIKEIKRYGARIAIDDFGDGYSN 440

Query: 870 LSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            SYL  +  D +K +GSL+      R A  ++ +I+  A  +    IA+ ++    + ++
Sbjct: 441 FSYLIKMNVDFLKIDGSLIKDIDTDRNAYLVVETIVDFASKLGVETIAEFVHSSTVMDKV 500

Query: 928 TRMGCDYIQDSHVASP 943
             MG  Y Q  H+  P
Sbjct: 501 KEMGIKYSQGYHIDKP 516


>gi|319945220|ref|ZP_08019482.1| sensory box sensor/GGDEF/EAL domain protein [Lautropia mirabilis
           ATCC 51599]
 gi|319741790|gb|EFV94215.1| sensory box sensor/GGDEF/EAL domain protein [Lautropia mirabilis
           ATCC 51599]
          Length = 493

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/448 (19%), Positives = 181/448 (40%), Gaps = 19/448 (4%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              IT  +           +  LT  PN     + L     L +     +P ++ I +++
Sbjct: 23  CRIITSMRSRPSMEAPLNQR--LT--PN-----ELLAHGQQLLSRKAPGQPLLLTIGLNR 73

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
             ++  +      + VL  + +RIG+ L+  D +A  + +   I++ +  N       A 
Sbjct: 74  SDQLQALARDPHANLVLGEIIKRIGKRLRAEDRVATAAFDEIWILIANVPNEAVATTVAT 133

Query: 636 AMRKSIAMPINLLERE-----ITVTASIGFASWTSSKITSSEMLKNA-ELAMYHAKHRGG 689
           A R+++ +PI++  +        +   IG A   SS ++   +L+ A +     A+    
Sbjct: 134 AFREALYVPIHIPLQNSQTLTAQLQPIIGGAWSRSSTVSIGGLLQGAWDARQLAAEREER 193

Query: 690 NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKW 749
             V+        +    I+  L   + +++L + + P I L   +    EALI+W     
Sbjct: 194 LLVQCIGADDNAARMAEIETALRRHLFSNDLEVHFQPQIDLATNQCHAAEALIRWPRNHP 253

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
             +S +    I ++  MI  +  F++  + R  + W+ Q     + I IN+++K   D  
Sbjct: 254 LQVSPAMIASICDDRGMIGQLTQFVINTVLRQQMMWQAQGID--LSIGINLSAKTANDPG 311

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
               +         SP+R+    +E  ++ N   +   +  LR IG  L++DDFGT  S 
Sbjct: 312 FAAQVAQACETWSLSPTRLLFELTEDSIVRNERATIECMHALRNIGCELSIDDFGTGYSS 371

Query: 870 LSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
            +YL   P   +K +   +           I++++I +A   +   +A+ +     +  L
Sbjct: 372 FAYLRQFPVHELKLDRVFIQNLVNDRGDQQIVKALIDLAHAFDLRALAEGVDDPAAVHML 431

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKE 955
              GCD +Q    A  L    ++  ++ 
Sbjct: 432 REFGCDRVQGFLYARALPAEELIPWIQR 459


>gi|24461658|gb|AAN62227.1|AF440524_14 conserved hypothetical protein [Pseudomonas aeruginosa]
          Length = 250

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 4/246 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+   EL+LV+ P + +    I G EAL +W HP  G +S  +F+  AE   +I 
Sbjct: 2   TELRRAINLDELFLVFQPKMEMGTRRICGAEALARWRHPSHGLMSPDQFIYFAERSGLIT 61

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  + +    R+   W        + I +N++S DL D  L   +   +      P  I
Sbjct: 62  RLTYWAIGAALRESYVWHSSG--EAVPIAVNLSSHDLRDPNLMAHISESLETWGAHPDWI 119

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +   +ES +M +   S+++L  LR +G  L +DDFGT  S LSYL  +P + +K + S +
Sbjct: 120 QFELTESCLMEDIANSQMVLKMLRDLGFKLFIDDFGTGYSSLSYLRKLPVNYIKIDQSFV 179

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 +   AI+RS I +A N+   ++A+ +  +I +  L   GC+ +Q   ++ P+  
Sbjct: 180 MNLGSDDDSAAIVRSTIDLAHNLGLEVVAEGVESKIAMGMLAEWGCEEVQGFFISKPIPG 239

Query: 947 NSILKL 952
           +     
Sbjct: 240 SDFQDW 245


>gi|154505224|ref|ZP_02041962.1| hypothetical protein RUMGNA_02737 [Ruminococcus gnavus ATCC 29149]
 gi|153794422|gb|EDN76842.1| hypothetical protein RUMGNA_02737 [Ruminococcus gnavus ATCC 29149]
          Length = 539

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 193/436 (44%), Gaps = 24/436 (5%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            +K  +     ++ D+LTG+ NR SF+      +      ++     + +DI+  K  N 
Sbjct: 124 LQKMQKQQEYLSYHDDLTGLMNRNSFV----RYMSDVQKKEHKSLGAVSVDINGLKNFNR 179

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   GD+V++ +   + E      ++ R++G+ + + +         A +   ++   
Sbjct: 180 EFGHEYGDEVVIRVGEVLEEHF-RSSLVFRMTGDEYLVAVED-------ATYDTFIKSVN 231

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                L    + +  S+G+A W    I + +++  AE  M   K +       ++     
Sbjct: 232 DAHHKLDNISLGL-VSVGYA-WEKVDIDAEKLIGRAEGMMREEKQK------YYKNLKKG 283

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               +IK+DL   +EN    +   P + +  EE+VG EA++++ H   G ++  +++ + 
Sbjct: 284 HHEPIIKQDLLSDIENGNFIVCLVPKVDVDTEEVVGAEAVVRYHHKDLGIMNPGKYLTLL 343

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           EE  +   ++L++ E + + +  W  + ++P I I +N A   L   ++ E M ALI K 
Sbjct: 344 EETKLSHYLDLYVFEEVCKTLRRWESE-DLPMIPIAVNFAGATLRQIDVAEKMTALIEKY 402

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             S   +++  SES    N E       ++RK  + + LD FG K S ++ L  + FD +
Sbjct: 403 HVSCEYLEVEVSESYSDMNQEMLAETSNKIRKSNVRVILDHFGAKESTVAILTIMEFDGL 462

Query: 882 KFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S++T      +  ++ +++      +   + A  +     +  L  +GC  +Q S 
Sbjct: 463 KIDKSIVTNIVGNGRSQSVAKAVTDACCQLGVPVSASGVETRDQLNVLKELGCSCVQGSL 522

Query: 940 VASPLGFNSIL-KLLK 954
              P+  ++   + LK
Sbjct: 523 FNKPITIDTFEVRYLK 538


>gi|325915395|ref|ZP_08177712.1| EAL domain-containing protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325538442|gb|EGD10121.1| EAL domain-containing protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 267

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++  L  A+E  E  LVY P++  + +    +EAL++W+ P  G  S  EF+ IAEE 
Sbjct: 1   LELEHALQGALEREEFTLVYQPLVNTVGDASPAIEALMRWNRPGHGPCSPVEFIPIAEEC 60

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             I  +  +++    R  + W          I +N+++  L +    E +  +     + 
Sbjct: 61  GEIVRLGEWVIGEACRQAVVWDRAGLNFS-RIAVNVSAVQLRERGFAERVLEICRDNSWP 119

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PSR++L  +ES ++ + +  R       + G+ L +DDFGT  S L YL   P   +K +
Sbjct: 120 PSRLELELTESALIRDSDALRRCFELFEQNGVLLAVDDFGTGFSNLHYLNRFPVQRLKID 179

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S + G         + ++I+ +   +   ++A+ +    +   L + GCD IQ    + 
Sbjct: 180 RSFVQGMLDDANTAEVTQAIVHLGHALGMQVVAEGVETVQEDALLRQQGCDEIQGYFYSR 239

Query: 943 PLGFNSILKLLKERFPLVK 961
           PL    + + L+E    ++
Sbjct: 240 PLSPRDMAQWLREAEAGMR 258


>gi|293446423|ref|ZP_06662845.1| yegE protein [Escherichia coli B088]
 gi|291323253|gb|EFE62681.1| yegE protein [Escherichia coli B088]
          Length = 1105

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|188495724|ref|ZP_03002994.1| PAS fold family protein [Escherichia coli 53638]
 gi|188490923|gb|EDU66026.1| PAS fold family protein [Escherichia coli 53638]
          Length = 949

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 386 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 445

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 446 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 504

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 505 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 563

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 564 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 623

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +++ G   
Sbjct: 624 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASQNGGRGR 683

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 684 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 743

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 744 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 800

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 801 ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 856

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 857 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 916

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 917 TLSGIGVDLIYGEVIADAQPLD 938



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 33  RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 92

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 93  MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRTERKHISESETRFRNAM 152

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 153 EYSAIGMALVGTEGQWLQANKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 212

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 213 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 272

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 273 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 331

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 332 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 389

Query: 525 SLE 527
             E
Sbjct: 390 LNE 392



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 85/281 (30%), Gaps = 14/281 (4%)

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
           +  +   +AL    ++F   YL     + ++ + +   +A    L  +S  Y        
Sbjct: 5   LSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWLSMLYLPW----- 58

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
                    +    +++  ++       LI    ++ +  +              +   +
Sbjct: 59  ------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHM 112

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
                L+++L    +   + A     + I     R   A+  S   +         +   
Sbjct: 113 PWLPFLLILLPANIMTMVMYAFRTERKHISESETRFRNAMEYSAIGMALVGTEGQWLQAN 172

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +   LG +   + G    +       D +     ++  +         E R    +  
Sbjct: 173 KALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGD 230

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 231 VVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 271


>gi|323940862|gb|EGB37050.1| GGDEF domain-containing protein [Escherichia coli E482]
          Length = 1004

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 441 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 500

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 501 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 559

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 560 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 618

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 619 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 678

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 679 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 738

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 739 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 798

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 799 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 855

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 856 ATLVNDLLEQLDNSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 911

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 912 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 971

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 972 TLSGIGVDLIYGDVIADAQPLD 993



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 88  RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 147

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 148 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 207

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 208 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 267

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 268 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 327

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 328 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 386

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 387 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 444

Query: 525 SLE 527
             E
Sbjct: 445 LNE 447



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 48  GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 106

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 107 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 155

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 156 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 215

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 216 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 273

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 274 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 326


>gi|157164738|ref|YP_001467480.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Campylobacter concisus 13826]
 gi|112800982|gb|EAT98326.1| diguanylate cyclase/phosphodiesterase [Campylobacter concisus
           13826]
          Length = 636

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 178/423 (42%), Gaps = 37/423 (8%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D +TG+ N+ + +   +             P V+++DID + K+ND  G  V D +L 
Sbjct: 233 YIDPMTGLFNKAALIKDASEY---------KYPKVILMDIDDFGKMNDYYGKYVCDQILK 283

Query: 594 SLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN------ 646
            +   I E           +  +RF ++  + +   +  + A  +       +       
Sbjct: 284 QMANLIKEFAKNENMKAYCIEADRFALVEDNNDFIDRYEELAENLLDIFKGRMLSIKDEN 343

Query: 647 -LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            +   +I +  +IGFA        S + L+ A +A+  AK    ++V  F+  S + +  
Sbjct: 344 GVEVDDIEIHNTIGFAL------DSDQTLRKATIALKSAKSLDKDYVCYFKGLSQKDEYA 397

Query: 706 -MIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             I+    +  A  N  +   + PI       I   E LI+        IS S F+ I++
Sbjct: 398 NQIERSKLIQNATINDNIVPYFQPIFDEKKIPIK-YECLIRILDRDD-VISPSVFLDISK 455

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
            +     +   ++++    +I        P + + IN++S+D++D ++   +  L++K  
Sbjct: 456 RIKRYADLEKQLIKKCFEHLIE------DPNLVLSINLSSRDMIDGDVSALVLNLLNKHN 509

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               RI     E   + + ER  + + R + +G  + +DDFG+  S  SY+  I  D VK
Sbjct: 510 V-AGRIVFEIVEDEELKSAERVSVFIERAKSMGAMIAIDDFGSGYSNFSYIIKIKPDYVK 568

Query: 883 FNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS++      +   AI  +I+  AK++    IA+ ++ +        +G D  Q  ++
Sbjct: 569 IDGSIIKDIDINKDSYAIASAIVAFAKDLGIKTIAEYVHSKEIFNVCKEIGIDEFQGFYL 628

Query: 941 ASP 943
             P
Sbjct: 629 GIP 631


>gi|260219534|emb|CBA26379.1| hypothetical protein Csp_E34670 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 434

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 122/253 (48%), Gaps = 3/253 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ D+   +  +E +LVY P +   D   +G EAL++W HP+ G +S  +F+ +AEE  
Sbjct: 178 TLERDIERGIARNEFFLVYQPQV-QSDGRAMGAEALLRWRHPQLGLVSPGDFIPVAEESG 236

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +  ++L+   R +  W     M  + + +N+++K  L  +    + + + +     
Sbjct: 237 LILPLGSWVLQEACRTLQRWAKLPVMAGLSLSVNVSAKQFLQADFVLQVASAMEQHGVVA 296

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +R+KL  +ES+++ +       +  L  +G+  +LDDFGT  S LSYL  +P D +K + 
Sbjct: 297 ARLKLELTESMLVHDMNDIIAKMHSLHALGVGCSLDDFGTGFSSLSYLKKLPLDQIKIDQ 356

Query: 886 SLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + +    +     AI R+++ + +++   +IA+ +        L    C   Q    + P
Sbjct: 357 AFVRDVLTDPSDAAIARTVLQLGESLGFAVIAEGVETVGQRDFLLANHCRLFQGYLYSRP 416

Query: 944 LGFNSILKLLKER 956
           L        + ++
Sbjct: 417 LAAIDFEMYVADK 429


>gi|260868777|ref|YP_003235179.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|257765133|dbj|BAI36628.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|323177035|gb|EFZ62625.1| hypothetical protein ECOK1180_4401 [Escherichia coli 1180]
          Length = 1105

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 90.4 bits (223), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWH-----AKVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESEPRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESEPRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|83644366|ref|YP_432801.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632409|gb|ABC28376.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 616

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/681 (14%), Positives = 210/681 (30%), Gaps = 84/681 (12%)

Query: 20  LFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGIS--RRIEV 77
           LFLL     +     I ++S    L++            + ++    +        R   
Sbjct: 4   LFLLCAQVFASTYNSIQLTSRQERLEVAPYLWWVAENHGEIKIEDILERKTAPMGWRQNN 63

Query: 78  ---SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134
                  +     W  F++ N     +ER + + +  L     +  +         +   
Sbjct: 64  RFDPNFGLDVSPRWFRFSVTNAGAESVERWLEISYPVLDDIRVYLTEEEKVVEAYHSGDT 123

Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQI--YLWEPNFYKDTVNSFTLYR 192
               +R     + +F     P +  T  + I T    ++   LW P  +          +
Sbjct: 124 LNFRERPVFHRNFIFPFKFKPHSKSTVYIRIQTQGALELPADLWSPTAFVQADQWKLAAQ 183

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGF-LSKLVNLPSGELL 251
            +  G+   +A +      V R    +        +        G     +         
Sbjct: 184 FLFSGIMLAMAAYNLALGFVIRDLTFMHYVGYVVSIAIVQLALHGAPFQFIWPHSPQWNQ 243

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
           I          +   +F + +L+ N     + YI  S       LFC +  +    A+  
Sbjct: 244 ISLVFFIGCSVTFASLFGYRFLNLNVRGGILPYIAIS--CAFFGLFCCALAFSASYATGI 301

Query: 312 RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPAL 371
           +I + +  +    ++I   ++   R      A      W + L       +   + +  L
Sbjct: 302 KIAVLATGVVSIVWLIIGLLQWSRREP---TAAYFTLAWAVFLV----GNIAISLEKIGL 354

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +  L +I  +        V+                SLA+          +I R R   +
Sbjct: 355 IPNLTIIGFMPQIGACIEVMI--------------FSLALAQ------RINIERRR-HIS 393

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
                        +          +H   R          +  ++   + E RV     +
Sbjct: 394 MR----------ELA---------LHRE-RSAREAEQSMLMAQQQANDELERRVAIRTEE 433

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            +  + ++                         + E +   A  D LT + N+ SF   L
Sbjct: 434 LNEAMKKLSV-----------------------AHEQLNEIATFDQLTQLKNKASFERVL 470

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILA 610
                  +   +   +++ IDID+++K+N   G   GD  L  L + I  + +   D + 
Sbjct: 471 LQEWSRCSRSISA-LSLVFIDIDRFQKVNQQFGQFAGDTCLQVLAKLISSMTRRAGDSIF 529

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS-WTSSKIT 669
           R  G+ + ++L   +    +        ++ A  I++ E   +VT SIG +S   S    
Sbjct: 530 RYEGDCYVLVLAHCSAEGALQLSEQIRSRTEATLIHVDEARFSVTVSIGLSSDIPSQGWE 589

Query: 670 SSEMLKNAELAMYHAKHRGGN 690
             ++++ A  A+  AK  GGN
Sbjct: 590 PKDLMERAREALAEAKMNGGN 610


>gi|299069614|emb|CBJ40886.1| putative diguanylate phosphodiesterase (signal transduction EAL
           domain) [Ralstonia solanacearum CMR15]
          Length = 466

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 176/437 (40%), Gaps = 28/437 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D ++G+P+R+ F+  L                +++I  D + +    LG     +V+V  
Sbjct: 13  DPVSGLPDRERFVQLLAR--TPHPVPSGSVGALLLIGFDHFAEAAASLGPLAARNVMVEC 70

Query: 596 TRRIGELLKFPD-----ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
             R+  L          ++ R+    F +   +  ++  + D A  +  S+  P      
Sbjct: 71  ASRLQALCPQAVDGAAPVVGRIGPETFAVASAAFASAQAVHDLARRISASLTRPFITAGY 130

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV----- 705
           E+  + SIG   +      ++ +++ A+ A++H +H G      +  ++           
Sbjct: 131 ELVCSCSIGMTMFDGPPADAARLIEQADRALFHVQHGGEQSPAMYAPAATAGAPGMATDA 190

Query: 706 --------MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                    +   L  A+   +  L   P + L++ +IVG E L++W  P+ G ++ ++F
Sbjct: 191 NDPVSEHPRLAAQLRHALARRQFSLNLQPQLSLVNGQIVGYEFLLRWISPELGGVAPADF 250

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQA-------NMPPIFILINIASKDLLDNEL 810
           + I E+   I+ +  ++L+  A+ +   + +          P +   +N++   LLD +L
Sbjct: 251 LPILEQTGEIREVGRWVLDNAAQMLAGLQREQAERAGTARQPDLNAAVNLSDAQLLDPQL 310

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            E ++ + ++     +R+    SE  ++     +R  +  L   G  + ++DFG     L
Sbjct: 311 SEVVRDIAARHAVPTARLVFEVSEHTLLRAGAAARQAVDALHACGARVAVEDFGATAHSL 370

Query: 871 SYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
             L     D VK +  +++  +       L+ ++  A +    + A  +     ++ L  
Sbjct: 371 DCLAQFCPDQVKLDRGVVSAVSGAGDDTALQRLVAAAHDAGVPVTATRVETAAQLQALRA 430

Query: 930 MGCDYIQDSHVASPLGF 946
             CD IQ   ++ P   
Sbjct: 431 CRCDVIQGYLLSQPFPA 447


>gi|256823482|ref|YP_003147445.1| PAS/PAC sensor-containing diguanylate cyclase [Kangiella koreensis
           DSM 16069]
 gi|256797021|gb|ACV27677.1| diguanylate cyclase with PAS/PAC sensor [Kangiella koreensis DSM
           16069]
          Length = 427

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + +     +    V  + DI++           +P+    LG  +  + G   +
Sbjct: 126 EHKDLHKALEESEAKFRAFVETANDIIYSVSADGCFTYVSPNWTDKLGHETSEVLGQ--H 183

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           +  ++H +D D     L         +   E+RVR  +N + W      P+ + +G +  
Sbjct: 184 FAHFVHPDDVDRCTQFLVQLYEEGTKKSGLEYRVRHKNNYWCWHTTNASPILDKDGKVTS 243

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            +GIA DITE+K   + +   A  D LT +PNR  F DRL   + L+    + +  ++ +
Sbjct: 244 TVGIARDITERKFIEQQVEHQAHYDTLTDLPNRSLFSDRLEQAIRLAHR-QHEQLALLFL 302

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+DK+K +ND  G A+GD +L  + +R+ + L+  D + R+ G+ F ++L    +     
Sbjct: 303 DLDKFKPVNDNYGHAIGDILLQQVAQRMKDCLRESDTVGRIGGDEFLVLLPHVESVDSAT 362

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A  + ++I+ P  +   +I ++ SIG A + +   T  E+++ A+ AMY AK++ GN
Sbjct: 363 HIAEKLLQAISSPFRINRIDIEISCSIGIALYPTHGNTVLELIQVADQAMYKAKNQKGN 421



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEFR 484
             +  +  I  + G+ +      I +    IH +D D      L +           EFR
Sbjct: 33  RFLYISDGIEQLCGVTAQQAMADIESIFSLIHTSDFDRVITESLTTAQHG--VVWHGEFR 90

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +   D +  W+    RP    +G I+ + G   D TE K   +
Sbjct: 91  MCLKDGRTIWVAAYDRPQVFDDGSII-WTGYVIDNTEHKDLHK 132


>gi|87200000|ref|YP_497257.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135681|gb|ABD26423.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 430

 Score =  282 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 191/426 (44%), Gaps = 20/426 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
           +D LTG+    S  D L                 M++ + +++ +N   G + GD  LV 
Sbjct: 15  RDTLTGLAGIASASDWLD------RNGAKGFVHAMLLGLHRFRSVNLAYGQSAGDIALVE 68

Query: 595 LTRRIG----ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           L +RI     E +    ++AR+ G  F +    + +  +    A A+ + ++  + L   
Sbjct: 69  LAQRIRIFADEEIGGDTLVARVGGGDFLVASAGKVSRERWQWLAEALARRVSRVLPLRGE 128

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSDRVMIK 708
           E+ +   I        +   + +L   + A+   + +             +       ++
Sbjct: 129 ELQLAPRIALLRGQPGEGGPA-LLDRLDQALTTLQQQPARRLQWADGSHLARGRSAARLE 187

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            D+  A+   E+ +V+ P   +   +IVG+EAL +WDHP+ G I +     +AE    + 
Sbjct: 188 ADMIGAMARDEIGIVFQPQYAVAGGDIVGVEALARWDHPQLGRIGAETLFALAERGDHVA 247

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++  +  R     + W      P I + +NI ++DL D+ L E  + L+++T Y PS +
Sbjct: 248 QVSRHIAGRAMWQAVEW-----KPVIPLSLNITAEDLGDDRLVEDCRLLLAQTGYPPSSL 302

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E  ++ + ERS   L +L ++G+ + LDDFG   +    L  +P +T+K + SL+
Sbjct: 303 TVEVTEHALIADFERSAAALEQLARLGVRIALDDFGAGYANFRTLKALPVNTLKLDASLV 362

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  +  AILR+I+ MA+ +   ++ + I  E  ++ L   GCD  Q    + P+  
Sbjct: 363 RDIDRDPRDRAILRAIVAMARALGQKVVVEGIERESQLQVLAAEGCDAFQGFLRSGPIPA 422

Query: 947 NSILKL 952
           + I  L
Sbjct: 423 DQIAAL 428


>gi|193062885|ref|ZP_03043978.1| sensory box-containing diguanylate cyclase [Escherichia coli E22]
 gi|209919532|ref|YP_002293616.1| putative sensor protein [Escherichia coli SE11]
 gi|260844678|ref|YP_003222456.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|307312368|ref|ZP_07592002.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Escherichia coli W]
 gi|192931528|gb|EDV84129.1| sensory box-containing diguanylate cyclase [Escherichia coli E22]
 gi|209912791|dbj|BAG77865.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|257759825|dbj|BAI31322.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|306907539|gb|EFN38042.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Escherichia coli W]
 gi|315061342|gb|ADT75669.1| putative sensor protein [Escherichia coli W]
 gi|323183849|gb|EFZ69240.1| hypothetical protein ECOK1357_2830 [Escherichia coli 1357]
 gi|323378078|gb|ADX50346.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Escherichia coli KO11]
 gi|325497888|gb|EGC95747.1| sensory box-containing diguanylate cyclase [Escherichia fergusonii
            ECD227]
          Length = 1105

 Score =  282 bits (723), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|156932955|ref|YP_001436871.1| hypothetical protein ESA_00758 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531209|gb|ABU76035.1| hypothetical protein ESA_00758 [Cronobacter sakazakii ATCC BAA-894]
          Length = 745

 Score =  282 bits (723), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 167/438 (38%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A  D L+ +PN ++    L                +  + I + + +
Sbjct: 317 TRQRTMHLRGRRLALIDPLSHMPNLRALNRDLGKA---------PWSVLCFMRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       +   + ++L   ++  +LSG+   + + +E+   +I      +R+
Sbjct: 368 GRNYGVMLRILYKQQMAAWLRQILLPDELAYQLSGHDLVLRIHTESYLERIDALDKRVRQ 427

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEML----KNAELAMYHAKHRGGNHVESF 695
                       +     I ++   S       +L      A+L++   +        + 
Sbjct: 428 F---RFMWDGMPLQPQVGISYSFVRSPVTHLHLLLGEMSTMADLSLATNQPESLQCRGAN 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V      +V +   L  A++N    L+   I  +  +     E L++        I+  
Sbjct: 485 HVQKAVKLKVDMLNRLQQALDNHHFRLMAQRIEGMRGDS--YYEILLRMRGDDGELIAPE 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +   I+L +LE   + +  WR+Q         IN+    +        +Q
Sbjct: 543 NFLPVAHEFGLSSRIDLMVLESTLQFMDEWREQLPGS--RFSINLTPATVCRVPFPGEVQ 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES    N E++++ L RLR +G  + +DDFGT  +  + L  
Sbjct: 601 RLLARYHIEPWQLIFEITESQSFTNVEQTQMTLSRLRAMGCRIAIDDFGTGYASYARLKS 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           I  D +K +GS +     +     I+ S+  +A+     ++A+ +  E        +G D
Sbjct: 661 INADILKIDGSFIRNIVTSSLDYQIVESMCHLARMKNMQVVAEYVESEEIKNVACSLGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P    S++ 
Sbjct: 721 YLQGYVIGKPQPLESLIA 738


>gi|191168862|ref|ZP_03030635.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A]
 gi|190901101|gb|EDV60877.1| sensory box-containing diguanylate cyclase [Escherichia coli B7A]
          Length = 1105

 Score =  282 bits (723), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|71907401|ref|YP_284988.1| PAS:GGDEF [Dechloromonas aromatica RCB]
 gi|71847022|gb|AAZ46518.1| PAS:GGDEF protein [Dechloromonas aromatica RCB]
          Length = 449

 Score =  282 bits (723), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 150/317 (47%), Gaps = 8/317 (2%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           + I    I++ L     ++ + +  ER    +  +GD +WDW+I  +RV+       ++G
Sbjct: 111 LDIVKLRIRNTLKLASLNRELRASEERMRFVLDATGDGIWDWEIEFNRVSHNEAWCRMMG 170

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           L +  +  P+ +++  IH  D       LD    +       E+R+R +D  + W+    
Sbjct: 171 LDTSFLSHPLADYVERIHPEDLAAVERALD-ISTHENTLFTAEYRIRHSDGHYLWISDTG 229

Query: 500 RPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + +  + +G   R +G   +I E+K+S   I   AF D LT +PNR+  +DRL   +  +
Sbjct: 230 QVVDRDIDGKASRMVGCVKNIDERKRSEADIHRLAFFDALTELPNRRLLMDRLQQAIFHN 289

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             +++L   ++ +D+D +K++ND  G A+GD +L+ +  R+   ++  D ++RL G+ F 
Sbjct: 290 TRNNSL-GALLFLDMDHFKQLNDTHGHAMGDAMLIQVASRLRRNVREQDTVSRLGGDEFV 348

Query: 619 IILISENNS-----LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           ++L S                  +  ++  P  L   +   + SIG   +        E+
Sbjct: 349 VLLESLAPDPVSAGNAATLIGEKLLGALNSPYQLGSIKHHSSPSIGLTLFGGDNEQLDEI 408

Query: 674 LKNAELAMYHAKHRGGN 690
           LK A+ AMY AK  G N
Sbjct: 409 LKRADHAMYEAKGAGRN 425


>gi|297579292|ref|ZP_06941220.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536886|gb|EFH75719.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 818

 Score =  282 bits (723), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 198/561 (35%), Gaps = 36/561 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H     +F   +   +  +
Sbjct: 138 GVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ---HFYVDMWQQLREQ 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-EQKKSLEGILCNAF 534
            G        + A  +     + I+ +S   G I  YIG   D+     + L+    +  
Sbjct: 195 GG-WSGTILSQRASGEVWPQDLFIKRLSPQKGQI-FYIGFTTDLAPHLDRVLDKQAGDVE 252

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
              LT +P    F  +L   L    T                  I            +  
Sbjct: 253 --LLTQLPTLSKFSAQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRR 299

Query: 595 LTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLERE 651
           L   + +       L    G   F   L +E N     +      +R+          +E
Sbjct: 300 LAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQE 357

Query: 652 ITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVM 706
                    +G +           ++ +A  AM  +HA      +     +      R  
Sbjct: 358 AHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKT 417

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +++ +   + N ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL +
Sbjct: 418 LEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPEILHASTQELISIAEELGL 477

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSP 825
           I  ++  +  +  +D+           + + IN +   DL   ++ + +  ++++T    
Sbjct: 478 INQLDELIGGKALKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
             I +  +E+    +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K + 
Sbjct: 537 KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596

Query: 886 SLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +T      +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A P
Sbjct: 597 EFVTNIEVGSRRYAIVKMMTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656

Query: 944 LGFNSILKL--LKERFPLVKN 962
           L  ++++     ++   L   
Sbjct: 657 LPLSNLIHASDYRKHLKLTNR 677


>gi|119486865|ref|ZP_01620840.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456158|gb|EAW37291.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 564

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/413 (23%), Positives = 194/413 (46%), Gaps = 15/413 (3%)

Query: 534 FQDNLTGIPNRQSFLD---RLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
             D LTG+PN Q+  +    L   +       NL P  +++ +D+++++N+ +G   GD 
Sbjct: 134 RYDQLTGLPNLQALSETNGYLQQAIAKRDKQKNLVP-FLLLGLDRFQRVNEAIGYPNGDL 192

Query: 591 VLVSLTRRIGELLKF--PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           +L  L +R  + ++     I+ARL+G+ FGIIL     + ++ D   ++   ++ P N+ 
Sbjct: 193 ILKQLAQRFNQFIQPIEGTIIARLNGDEFGIILPPVAQTSEVEDLTQSLLNLVSEPFNIN 252

Query: 649 EREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---VSSFRSDRV 705
            + I VT +IG A +     T  E+ + A +AM  AK  GGN  + +      S +S + 
Sbjct: 253 GQRIPVTTTIGVAFYPY-ASTLEELRRQAGIAMGEAKKLGGNRSQIYIRPLFGSDQSQQF 311

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +  D   A E+ +L + Y P I L   +IVG+   I W HP+ G IS ++   +  E  
Sbjct: 312 QLIADFREAWEHQQLKVYYQPRIDLRRRKIVGVGTAIYWHHPQLGVISQAQISDLMTESG 371

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +   ++ +ML+   +    W++      + + +  +     D  + + +  L  +   +P
Sbjct: 372 LTLTLSEWMLKTAVKQAQVWQNS--RLSLQVAVPFSELLFTDKNIIQKLINLCQEFGDNP 429

Query: 826 SRIKLSFSESVVMG--NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
           S ++L     ++    N       L  ++++ I + +  F  + + +SYLG +P D++K 
Sbjct: 430 SSLELEIDADLIAQAKNLNALAAQLLNIKQLNIKIIISQFNLEHTTISYLGELPIDSIKL 489

Query: 884 NGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           +  L+   + K   I+  I  + K ++   IA  +  +  +  L +  CD  Q
Sbjct: 490 DSRLLQTLSPKS-TIIDMITSITKRLKLKFIADGVETDEQLILLKKQKCDQAQ 541


>gi|254457403|ref|ZP_05070831.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207086195|gb|EDZ63479.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 565

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/430 (20%), Positives = 165/430 (38%), Gaps = 29/430 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+K       C  + +  T +PN      +L   +            ++++DI  +  IN
Sbjct: 152 EEKTRELRYRC--YHEFHTDLPN----SQQLQADILK-----KDFSYILLLDISHFSTIN 200

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
              G    + VLV   R +   +     L ++  +RF I+L    +          +   
Sbjct: 201 KEYGKVFANHVLVRTARMLEYHIHKKAKLYKIESDRFVIMLKDATSEDVHEYCNQIVAFF 260

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR---- 696
               + + E E+++T +IG A         +E L N E A+  +K  G    E F     
Sbjct: 261 DNKNVKVDEAELSITFNIGVAKIQDD---ITETLINCEYALDKSKDLGSRRYEVFDDEIS 317

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                 + +       + +   ++   + PI  +   EI+  E L +        +S   
Sbjct: 318 CFRDEKEAIRWLRTTRMLILEDKIEPYFQPIQDIKTNEILKYEVLARGILGDR-IVSPIY 376

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE+L +I +I   M+ +          Q         INI  +DLL++ L + +  
Sbjct: 377 FIPPAEKLGLITSITRIMINKSFAFFQDKTHQF-------SINITERDLLESYLVDFLNE 429

Query: 817 LISKTLYSPSRIKLSFSES-VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            ++    S  R+     E+  ++ N  +    L  LR +G  + +DDFG + S  S L  
Sbjct: 430 KMATYNISADRVTFEILENITLVKNNAKITEQLNGLRAMGFKIAIDDFGIENSNFSRLLE 489

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           I  D +K +G  +       +   I ++I+ ++K +    IA+ +  E     +   G D
Sbjct: 490 INLDFIKIDGVFIRNLKENARNRTITKAIVNLSKTLGIKTIAEFVEDEDIYNIIKECGID 549

Query: 934 YIQDSHVASP 943
           Y Q  ++  P
Sbjct: 550 YAQGYYIGKP 559


>gi|320646736|gb|EFX15623.1| putative diguanylate cyclase [Escherichia coli O157:H- str. 493-89]
 gi|320652013|gb|EFX20366.1| putative diguanylate cyclase [Escherichia coli O157:H- str. H 2687]
          Length = 730

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 167 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 226

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 227 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 285

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 286 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 344

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 345 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 404

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 405 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 464

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 465 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 524

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 525 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFLQQAAKAVASKG---ISIALPLSVAGLSS 581

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      +  + E       +LR  G  +     G   
Sbjct: 582 ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVFSQVGRDL 637

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 638 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 697

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 698 TLSGIGVDLIYGEVIADAQPLD 719



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q      ER +LA    G  +W+W++  +  +    +  +  +
Sbjct: 30  LYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEI 89

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 90  PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALAN 146

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 147 RVLNKEGEVERLLGINMDMTEVKQLNE 173



 Score = 40.3 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%)

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 1   MEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 52


>gi|320155935|ref|YP_004188314.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
 gi|319931247|gb|ADV86111.1| GGDEF family protein [Vibrio vulnificus MO6-24/O]
          Length = 822

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 215/561 (38%), Gaps = 44/561 (7%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFR 465
              A       +   D     +          G     + G   + L    H ++   F 
Sbjct: 129 FRQAFDNDHHGILLTDAATQILLCNRYFENHTGYKLNQIVGQCASILDSGKHSDE---FY 185

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             +   V   +G  Q    +R          + ++ ++  +   + Y+G+  D +++   
Sbjct: 186 QSITEEV-NSKGLWQGVVLIRTFGGAIVPQELTLQKLTCDDK--VYYLGLYVDFSDRLYR 242

Query: 526 LEGILC----NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           L  +            LT +P  + F  +LT  +    ++++    V+   +  +     
Sbjct: 243 LADMEHGGVEL-----LTQLPTEKQFTQQLT--VRWMDSNNDDLLMVLAF-LPNF----- 289

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFP---DILARLSGNRFGIILISENN--SLKIADFAIA 636
               A GD+  +   +R+ E L+       +  L  N F   +    +    ++      
Sbjct: 290 ----AAGDEYELK--QRLSESLEKNRVSSAVGYLGSNHFVAAIECNKSQGPNQVQIIHQT 343

Query: 637 MRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +RK  A   +L   E+    +   +G +           M+ +A  AM     +    + 
Sbjct: 344 IRKFFAQLTHLSGEEVQNAVLRGKVGVSILGHDTQNPKVMVSHAVQAMLEHDGQHKGMIT 403

Query: 694 SFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            +  S  R    R  ++E +  +++   + + Y PII     +I   EAL ++       
Sbjct: 404 FYHGSIHREVLRRRELEELVVRSIKEESVEVFYQPIIDTATWDIAKFEALCRFKDKHGQW 463

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNEL 810
            ++ E + IAEEL M+  ++  + ++  + + S  ++     I I IN +    L   E+
Sbjct: 464 QNTQELVGIAEELEMVADLDWTVGKKSLQGLKSIHERFG-TRIGITINRSLNTKLGAEEV 522

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            +  + +I     +P  + +  +ES    +      L+ R+R +G+S+ +DDFGT  S  
Sbjct: 523 LQNAEQMICLYSDTPELVTVELTESAYFDSESSQSELIKRIRNMGVSVAIDDFGTGYSSF 582

Query: 871 SYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +YL    FD +K +   +T       +  I+R I  ++  +   ++A+ +  + +++ L 
Sbjct: 583 TYLSDCNFDLLKIDKEFVTDIHVGTHKYHIVRMITELSHTLNVKVVAEGVETKQELEVLC 642

Query: 929 RMGCDYIQDSHVASPLGFNSI 949
            +G DYIQ    + PL  + +
Sbjct: 643 GLGVDYIQGYFFSKPLPLDQL 663


>gi|291279139|ref|YP_003495974.1| hypothetical protein DEFDS_0739 [Deferribacter desulfuricans SSM1]
 gi|290753841|dbj|BAI80218.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 513

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 184/449 (40%), Gaps = 36/449 (8%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL-DRLTTILDLSATDDNLRPTVMV 570
           Y+    DITE K+  + +   A  D +T +PNR     D L  I        + +  +++
Sbjct: 82  YLVYGFDITEIKEKEKRLNYLANYDPMTNLPNRNKLYYDMLEHI--------DYKSVIVL 133

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           IDI   ++IN + G   G+  L+ L++ + ++ K    + RL GN F +           
Sbjct: 134 IDIKSMRQINSIYGYDTGNKYLIELSKILRDMFKE-FSIYRLYGNIFVVYDSVGLACEIN 192

Query: 631 ADFA-IAMRKSIA-MPINLLEREITVTASIGFASWTS----SKITSSEMLKNAELAMYHA 684
            D     + +S++   I +    + ++  +GF+        +K      LK AE A+  A
Sbjct: 193 EDLYLNKIYQSLSSKSIKINGFNLPISVRLGFSKCEDLEEKNKDYPELQLKLAETALLEA 252

Query: 685 KHRGGNHVESFRVSS------FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           K    +++   ++++         + +     L     +  L   + PI+      +   
Sbjct: 253 KKLNRDYLSYSKINNIVELYKNNWEWLNRITALIKNEIDGCLVPYFQPIVNNFTGAVEKY 312

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++    K     +  FM +A E   IK +   +++ + + +             + I
Sbjct: 313 EALMRIKIGKKIYTPN-FFMSVANESGYIKDLTKILIDEVFKRMKDNHK-------KVSI 364

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N+   D+ +  +   +     +      R+ +   E+    N       + + ++ G  +
Sbjct: 365 NLTPMDVEN-GILNYLVNKCKEYNIESGRVTIELLEN---ENFYELEDEVIKFKENGFLI 420

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAK 916
           ++DDFG   S  S L  +P D +K +GSL++          I+R I+ ++K ++   IA+
Sbjct: 421 SIDDFGVGYSNFSKLISMPIDYIKIDGSLISNIESDSSTYDIVRHIVEISKTLKCHPIAE 480

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLG 945
            +      + + ++G ++ Q  + + P+ 
Sbjct: 481 FVSNLTIYEIIKKLGVEFSQGYYFSPPVP 509


>gi|218690125|ref|YP_002398337.1| putative sensor protein [Escherichia coli ED1a]
 gi|218427689|emb|CAR08597.2| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli ED1a]
 gi|315618154|gb|EFU98745.1| uncharacterized protein yegE [Escherichia coli 3431]
 gi|332343848|gb|AEE57182.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 1105

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLDNSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 107/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H            
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 86/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I         A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|21231471|ref|NP_637388.1| hypothetical protein XCC2023 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768475|ref|YP_243237.1| hypothetical protein XC_2161 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113144|gb|AAM41312.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573807|gb|AAY49217.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 601

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 182/422 (43%), Gaps = 12/422 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L T+   +  +  +      I+I      N+    LG+   ++++   +
Sbjct: 178 GLHNARQLQADLDTL---AYGNHAMPVLAAFIEIYDTHAANEARQALGMQPIEELVRHAS 234

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ + + ++ D  + +R  +  P++     +++T 
Sbjct: 235 YVLTRALRGKATVYHVAPMRFAFFLLN-SAADEMEDLLLDLRDMLHAPVDAAGIPMSLTF 293

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  + ++++   +A+  A          S            +  D   A+
Sbjct: 294 HAGVVKFLPRQPDTGDVMRKGLVALGDAVSHHAILCWYSAAHDDAIQRSYRLALDAEAAL 353

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  +  LV+ P I L+D  + G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 354 EAGDFRLVFQPRINLLDLSVTGFEALLRWKHATLGAIGPDEFIPLFEKTALMCTVTEWVI 413

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   R + +WR         + IN++S+D  +  L   +            RI+L  +E 
Sbjct: 414 DHALRQLAAWRA--GGLDFSLSINLSSRDFGNVNLASDVIDRCQALGIPTERIELEITEG 471

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +  ++   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG  ++ 
Sbjct: 472 RWLRSNVQALPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIADQS 531

Query: 896 IAILR--SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              LR  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+    +   +
Sbjct: 532 GMQLRAEAVVRLASALGYRTVAEGIEHADEIALLRSWGCDEAQGFLLARPMEAGLVPAYV 591

Query: 954 KE 955
            +
Sbjct: 592 AQ 593


>gi|300955089|ref|ZP_07167494.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300318000|gb|EFJ67784.1| PAS domain S-box [Escherichia coli MS 175-1]
          Length = 1105

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLDNSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 107/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +        N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRELNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|326387481|ref|ZP_08209090.1| diguanylate phosphodiesterase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208137|gb|EGD58945.1| diguanylate phosphodiesterase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 408

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 166/387 (42%), Gaps = 9/387 (2%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V+V  + +Y+++   L   +  +    + RRI  +    + +    G  F     +    
Sbjct: 15  VIVAVVARYEEMLATLPHDLHGECAKQIARRI-SVGSGSETIYHSDGGHFAWTEEARPLD 73

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
           ++++     +R   A P+ +           G     +  + +   + +A  +   A   
Sbjct: 74  MQLSHLEG-LRALFATPLQIGPHTFDTNIHFGVD--RNEGVDAPTRVNSALASANEALAN 130

Query: 688 GGNHVESFRVS-SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           G                 + +   +   + N +++L + P   +    I G EALI+W+H
Sbjct: 131 GRAIELFEAHRLVEAPWELSLHARIDEGLRNGDIWLAFQPQYDIGSGRICGAEALIRWNH 190

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G I+ + F+L AE    I A+  ++LE      ++   +     + + +N++++ + 
Sbjct: 191 PTRGPIAPNAFILQAERAGRIDALTYWVLENAITAALAINAKG--ERLQMSVNLSAQMVD 248

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
             +L      ++S+    P  I +  +E+  +GN   +   L +LRK+G  L++DDFGT 
Sbjct: 249 KPDLVRNFSDIVSRRKIDPGLITIEVTETASLGNRAAAFHNLSQLRKMGFLLSIDDFGTG 308

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            + L+YL  +P D +K +   +     +++  AI+ S I +A  +  T++A+ I     +
Sbjct: 309 EASLAYLADLPSDEIKIDRRFVARIIESDRDRAIVASTIQLAHALGQTVVAEGIEDASTL 368

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILK 951
             L  +GCD+ Q  ++  P  F    +
Sbjct: 369 ALLRDLGCDHAQGYYLGKPEAFAGFER 395


>gi|218554635|ref|YP_002387548.1| putative sensor protein [Escherichia coli IAI1]
 gi|218361403|emb|CAQ98990.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli IAI1]
          Length = 1105

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSEADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|291283309|ref|YP_003500127.1| putative diguanylate cyclase [Escherichia coli O55:H7 str. CB9615]
 gi|168986335|dbj|BAG11875.1| predicted diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli O55:H7]
 gi|290763182|gb|ADD57143.1| Predicted diguanylate cyclase [Escherichia coli O55:H7 str. CB9615]
 gi|320657490|gb|EFX25288.1| putative diguanylate cyclase [Escherichia coli O55:H7 str. 3256-97 TW
            07815]
 gi|320663306|gb|EFX30611.1| putative diguanylate cyclase [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1105

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G + I    +A     +
Sbjct: 1073 TLSGIGVNLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|193069275|ref|ZP_03050231.1| sensory box-containing diguanylate cyclase [Escherichia coli E110019]
 gi|192957408|gb|EDV87855.1| sensory box-containing diguanylate cyclase [Escherichia coli E110019]
          Length = 1105

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKHWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNVLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L      K     ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGKLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|188991717|ref|YP_001903727.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733477|emb|CAP51678.1| Putative signal transduction protein [Xanthomonas campestris pv.
           campestris]
          Length = 592

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 182/422 (43%), Gaps = 12/422 (2%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV---LGIAVGDDVLVSLT 596
           G+ N +     L T+   +  +  +      I+I      N+    LG+   ++++   +
Sbjct: 169 GLHNARQLQADLDTL---AYGNHAMPVLAAFIEIYDTHAANEARQALGMQPIEELVRHAS 225

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             +   L+    +  ++  RF   L++ + + ++ D  + +R  +  P++     +++T 
Sbjct: 226 YVLTRALRGKATVYHVAPMRFAFFLLN-SAADEMEDLLLDLRDMLHAPVDAAGIPMSLTF 284

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRVMIKEDLCLAV 715
             G   +   +  + ++++   +A+  A          S            +  D   A+
Sbjct: 285 HAGVVKFLPRQPDTGDVMRKGLVALGDAVSHHAILCWYSAAHDDAIQRSYRLALDAEAAL 344

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  +  LV+ P I L+D  + G EAL++W H   G I   EF+ + E+  ++  +  +++
Sbjct: 345 EAGDFRLVFQPRINLLDLSVTGFEALLRWKHATLGAIGPDEFIPLFEKTALMCTVTEWVI 404

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           +   R + +WR         + IN++S+D  +  L   +            RI+L  +E 
Sbjct: 405 DHALRQLAAWRA--GGLDFSLSINLSSRDFGNVNLASDVIDRCQALGIPTERIELEITEG 462

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR 895
             + +  ++   L  LR  G+S+ +DDFGT  S   YL  +P + +K + SL+TG  ++ 
Sbjct: 463 RWLRSNVQALPRLRALRDAGVSVAIDDFGTGYSNFGYLTELPVNVLKLDRSLVTGIADQS 522

Query: 896 IAILR--SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
              LR  +++ +A  +    +A+ I    +I  L   GCD  Q   +A P+    +   +
Sbjct: 523 GMQLRAEAVVRLASALGYRTVAEGIEHADEIALLRSWGCDEAQGFLLARPMEAGLVPAYV 582

Query: 954 KE 955
            +
Sbjct: 583 AQ 584


>gi|332994673|gb|AEF04728.1| sensory box/GGDEF family protein [Alteromonas sp. SN2]
          Length = 751

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 261/748 (34%), Gaps = 66/748 (8%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA-LSSSLIIFLFMYLHWNRWHAKVGY 284
             VL  I +    L+  + L S      +    +  L+      L+  L   +   K+  
Sbjct: 30  LSVLRIILLIGVTLTSAIVLHSSYAAYQKGMYYVLYLTIGFSALLYATLGLRKGQIKLAS 89

Query: 285 ITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF-----IIYHGMKGYERAVL 339
            + +    +A L  + F   + +A    +   ++ +    F      I           +
Sbjct: 90  ASLTLTIVLAGLCILFFTIDIASARYGLLFFFTLPIILRLFYGNKAAIIGMFLNLIPFAV 149

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           LI    +  ++ I + +  T    + +I       L + VI +  ++          ++ 
Sbjct: 150 LINNQPIAPLFGIDITLPDTHTYLSSLIFMFFNFCLPMAVIRVMTSLESQSSLNLKQTKK 209

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +     R        G      D     +                +   +     YIH  
Sbjct: 210 MEKLVSRYQEIFNNGGTPSLFCDQQGKILQANRSARK--------LINQLPEPCHYIH-- 259

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRA--ADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
                       +      L    R +   + N      ++   + +    ++       
Sbjct: 260 -----------QLFELNEPLSAGHRQKTHISGNPQATFELQSASLQHHKKQLIHCF---- 304

Query: 518 DITE-----------QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           D++E           +++  E      + D LTG+ N   +   +   +  +        
Sbjct: 305 DVSEATEHDRKFDAFRRQHFEKH----YYDELTGLRNHHYWNSSVNQPVPANTQA----- 355

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             +++ +   + IN   G   GD  +     +I  +L     + RL G RF  ++  +++
Sbjct: 356 --VMLKLANLRDINLQYGYTQGDKAMARCAAQIQSVLPASVNVYRLPGARF--LVSCQHD 411

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVT---ASIGFASWTSSKITSSEMLKNAELAMYH 683
           S K  DF   +R+ +   I + +  + ++     +G     S+  + S++ ++  +A+  
Sbjct: 412 SHKSEDFNAWLREMLPGTIQIDDNLVKLSQPLNWLGGFVHVSTPQSPSQVTESCAIALSQ 471

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           A            V          ++ +   ++N  L L   P + + D  IVG E L +
Sbjct: 472 ASRDKDFSQFDSNVVKLIRKDTQHRDKVKRLLDNRCLALWLQPQVSI-DNTIVGFEVLAR 530

Query: 744 WDH-PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
                +   +   +F+ + E+          +L+     I +W      PP+ + IN++ 
Sbjct: 531 LKDDEENKILHPYQFLPVIEKNNWHILFTQKVLDNTIELIENWPSSI--PPVPVAINLSG 588

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
            +LL +   E +    S++ +   R+KL  +E+ V+ + + ++  L  L  +G ++ +DD
Sbjct: 589 PELLSDLFYEKLLRRYSESAFLRDRLKLELTETSVLASHQETKRRLTSLANVGATIIIDD 648

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYG 920
           FGT  + LS L  +    +K +   +      E+   I++  I +AK+++   IA+ +  
Sbjct: 649 FGTGHASLSQLIDMSASVLKVDREFIDRIDSSERHRKIVQMTIELAKSLDMQTIAEGVET 708

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +  +  L  MG    Q      P    +
Sbjct: 709 QAQLNLLVDMGFTLFQGYLYGKPAPIEA 736


>gi|291546803|emb|CBL19911.1| FOG: EAL domain [Ruminococcus sp. SR1/5]
          Length = 481

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/426 (21%), Positives = 183/426 (42%), Gaps = 16/426 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D++TG+ ++Q F   +   L            ++ +D    K+IN + G  VGD +L+
Sbjct: 67  YTDSMTGLFDKQYFDKWIGEKLYR-----KESFHLLAVDARNMKQINRIYGTRVGDQLLI 121

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
              +   E +     + R++GN F  +L S  +  K  D    + + +  P  +   +++
Sbjct: 122 RAAKGFRE-ITDSVQIFRITGNCFLAVLDSLTDYEKARDG---IEEFLKKPFFIENEKVS 177

Query: 654 VTASIGFASWTSSKITSSEMLKNAE--LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
             A+I              +L   E  +++   +          ++         ++  L
Sbjct: 178 FHAAICGIMNAEKLEKEDSILSYIEYMISLIQNRQDTVLIQSDSKILEGFRYEQEVEHFL 237

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             AV+     + Y P+  + +++ + LEAL +  HP  G I    F+ IAE+  MI A+ 
Sbjct: 238 QKAVKEDLFEVYYQPVYSIKNQDFITLEALSRLKHPVLGMIPPDVFIGIAEKQGMISAVG 297

Query: 772 LFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              L ++ R I     +  M  I  +  N++  +L+       +  +I      P   + 
Sbjct: 298 CLQLHKVCRFIKEH--EYIMKKIRNVKFNLSPSELMKPGYSHVLIGIIQGYGLDPGYFQF 355

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V     E     +    ++GI + LDDFG+  + L+ +  IPF  VK + SL++G
Sbjct: 356 EITENVATEYSESFCTAIDDFAEVGIHMCLDDFGSGYANLNAVLRIPFSAVKMDRSLLSG 415

Query: 891 --STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             S  +     RSI+ + +++   +IA+    E ++K L + G D IQ  + + PL    
Sbjct: 416 VSSDPQTATFYRSIVMILQHMGYKVIAEGAETEKEVKLLEKWGVDMIQGYYFSRPLCEEK 475

Query: 949 ILKLLK 954
           +L+ + 
Sbjct: 476 LLEKIS 481


>gi|266624175|ref|ZP_06117110.1| putative sensory box/GGDEF/EAL domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288863998|gb|EFC96296.1| putative sensory box/GGDEF/EAL domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 378

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 153/376 (40%), Gaps = 20/376 (5%)

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
              GD V+  +   +   +   +   R+ G+ F +I                + +     
Sbjct: 1   HKYGDRVIKKVADILKSRV--ENSAYRVGGDEFTVICADIG-KQDFQTLTEKLIRDFDRN 57

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
                       SIG      +     E+LK A+  MY  K R         +   R  R
Sbjct: 58  KEYD-------VSIGHTWKEGNVSADEEILK-ADDLMYAEKQR----YYHAVLQGDRMAR 105

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             I  +L   + +    + Y P I L    I+G EAL++    +   I    F+   E  
Sbjct: 106 AGIATELLRDIADHRFGVYYQPQICLKTGRIMGAEALVRKWSKRGTLILPDRFIPHYERE 165

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  ++LF+ E +  D  +W+ Q       I  N +   L+ +++   ++ +  K    
Sbjct: 166 RVICHLDLFVFETVCADWQNWKRQGIDT--HISSNFSRVTLMASDIVTQIKQICRKYEVP 223

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             +I +  +ES+   +P++   L+ ++   G S++LDDFG+K S LS L  + F+ +KF+
Sbjct: 224 AEKITIEVTESISKLDPQQLIDLMNQIVAEGFSVSLDDFGSKYSNLSILTTLDFNEIKFD 283

Query: 885 GSLMTGSTEK--RIAILRSIIPMAKNIET-TIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            SL+   +       ++++ + + + +     +A+ I     +  L +  CDY Q  + A
Sbjct: 284 KSLVDKLSSDAKSRIVMKNTMQICRELPMTRSLAEGIETVEQLDLLHQYHCDYGQGYYFA 343

Query: 942 SPLGFNSILKLLKERF 957
            P+   S L LLK+  
Sbjct: 344 KPMSAESFLALLKKEQ 359


>gi|262275297|ref|ZP_06053107.1| conserved hypothetical protein [Grimontia hollisae CIP 101886]
 gi|262220542|gb|EEY71857.1| conserved hypothetical protein [Grimontia hollisae CIP 101886]
          Length = 1247

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 212/570 (37%), Gaps = 15/570 (2%)

Query: 388  QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
            Q        +  +  + +  S A+    D +   D +          A + G  +  + G
Sbjct: 666  QETTRLQKENVVLTRENQLLSAAIESVNDGIIVLDSLLRITFINQHAAELTGYPASDLIG 725

Query: 448  -PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              I         + +  F  +L  +  ++   L   F ++    Q   + +   P++  N
Sbjct: 726  STIDEQFNVFDHHSQYAFAHLLSDY--HQDFCLSGTFTLQTEQFQETLVYLEATPVAPHN 783

Query: 507  GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
                 ++                      D +T  P +++F   L    D     + +  
Sbjct: 784  NATNGWVLTFRIQDALPSRAANSEGRYSVDPITKFPGKRAFEQILQNHTDNL-HYETVSH 842

Query: 567  TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             +++I++   + + D  G  V D ++ S    I         +ARLS +RFG++L ++  
Sbjct: 843  VLVMIELKGLETLADAFGDPVKDQLIKSAAILIKSYATKS--VARLSESRFGLLLDNQGL 900

Query: 627  SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                   +    K  A+     E    +   +G      ++ T  +++  A++AM     
Sbjct: 901  GSAQEIMSSLSEKICALKYQPGETAYHLECVMGMTLIEGNQKTPFQIIYQAQVAMESVSD 960

Query: 687  RGGNHVESFRV----SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
                 +  F            R  + + + +A+ N    L+  PI+   +      E L+
Sbjct: 961  DCHPAISVFDPSSLTDGISFRRDFLLQRIDIAITNRSFSLLCMPIMSNRNGLQNWHEVLV 1020

Query: 743  QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
            +    +   +  +EF+  AE    + +I  ++   +  +       A    + I INI++
Sbjct: 1021 RLITEEGQLLLPAEFLPAAEPTGRLISIERWVFNEVLNEQAQTLAAAG---LNIAINISA 1077

Query: 803  KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
                +    +   ALI K+     R+ +   ES ++ +  R++ ++  LRK+G  + +D+
Sbjct: 1078 SAFYNESFIDYCLALIKKSNLPSRRLCIEIKESTLLIDTLRAKDVVSSLRKLGCEVAVDN 1137

Query: 863  FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYG 920
            FGT+ +  SYL       +K +GSL+           I+ SI  +  ++     A+ +  
Sbjct: 1138 FGTELTSFSYLRKFNVSIIKIDGSLIAMMKASLVDRRIVESIKQICDSLRIKTAAQKVNS 1197

Query: 921  EIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            + D++ +   G DYIQ      PL    ++
Sbjct: 1198 DEDLRLVQAAGLDYIQGYVFGDPLPLARVI 1227



 Score = 75.0 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/435 (12%), Positives = 126/435 (28%), Gaps = 43/435 (9%)

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDV-----FRITINPGAVVTFIMEISTPN 169
                  LG   +   +        R P S + +     F I +   A     + +    
Sbjct: 21  IRIMLLFLGGLVVSLYS----IYFLRQPGSAAFIWYTNGFSIAMIALAPTNQRVSLIGTV 76

Query: 170 LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVL 229
              I L                +  +  +A+++A  L++ Y+       +   A  W V+
Sbjct: 77  FVAILLSN---LIFGDAPGQSIQLAMANIATIIAGSLSLAYISRIDEPFLSLKAFGWFVV 133

Query: 230 G------YISIDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHAK 281
                   I   FG  +  + L      +       ++    ++   ++  L   +    
Sbjct: 134 ATVLISPAIGALFGGWTLHLTLSVPLETVVSAWYLGDVIGILAITPLIYTLLQRKQGLPS 193

Query: 282 VGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLI 341
             Y   + +  IAI    S+    V      I +A  +   +  +               
Sbjct: 194 TFYKPTTALTIIAISALSSWLLSHV--EYPFIAIAIALTVASAVLDRLS----------- 240

Query: 342 PAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIF 401
                   + + + + +     ++++  A    L++ +           + +    Q   
Sbjct: 241 ---AFFTAFIVSVTLDLLLVSPDNLMSSAGTTELLMPISGAMLLGGLLAVKSARLLQIQK 297

Query: 402 SDGERQSL---AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
              ER +L   A+  S                      ++G     +    + +   +  
Sbjct: 298 ISDERATLFSNAMQSSVIGTVMVQSDGKMSNPNNSFVELIGYTHEEL--DRKTFRQLVFH 355

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIAN 517
            DRD     L      +    + E R+   + Q  W  I +  + +  +G++L +I    
Sbjct: 356 RDRDATNEQLYLLTENKIDSFKTEIRLTRKNKQVIWTRIGVSVVRDKWHGNVLHFIYQVQ 415

Query: 518 DIT-EQKKSLEGILC 531
           DI  +Q+   E  + 
Sbjct: 416 DIDKDQRFEHERNMW 430



 Score = 61.9 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           +Q +     F        ++   A+  +   V++ +        + +    +G+ + ++ 
Sbjct: 414 VQDIDKDQRFEHERNMWSQKFEFALGINRTAVYEMECHTKFFHLSGNAILAIGVNAANIK 473

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NS 505
             +  W+  IH +D   ++  + +  G + G +  E+R+     ++ W+    RP+  +S
Sbjct: 474 -RLYEWMSRIHPDDLREYQHTM-AHCGGKFGTI--EYRLMDESEKYRWVRDHCRPIEQDS 529

Query: 506 NGDILRYIGIANDITEQKKSLEG 528
           +G   + IG   DI ++++    
Sbjct: 530 HGVTTKVIGTITDIDDERERSLQ 552



 Score = 46.5 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 5/135 (3%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 Q   S  +   L        +W+++     +    ++  + G++       +  
Sbjct: 546 ERERSLQKALSSKQ-VELIEQVGELGIWEYEPHTATLYWNREMYALYGISEEE-EITLET 603

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +   DR  F T+ +    +    L    +V+   +      I  R +   +G   R
Sbjct: 604 WRERLLDADRHPFDTLFNLGRIH-NEHLTLNIQVKHTSDLIVNHSISARIIHAESG--TR 660

Query: 512 YIGIANDITEQKKSL 526
             G   + T  +K  
Sbjct: 661 LAGFCQETTRLQKEN 675


>gi|145222371|ref|YP_001133049.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
 gi|315442803|ref|YP_004075682.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
 gi|145214857|gb|ABP44261.1| diguanylate cyclase/phosphodiesterase [Mycobacterium gilvum
           PYR-GCK]
 gi|315261106|gb|ADT97847.1| diguanylate cyclase (GGDEF) domain-containing protein
           [Mycobacterium sp. Spyr1]
          Length = 589

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/420 (22%), Positives = 181/420 (43%), Gaps = 23/420 (5%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+PNR+ F   ++  +  +       P V+VI +D Y  ++D  G    D ++  L
Sbjct: 182 DAATGVPNRRGFERLISAEIGRA-HSGGTGPAVVVICLDNYAAVHDEFGDRAVDALMHQL 240

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
                 +L    +LAR + + F ++L               +R +               
Sbjct: 241 VGPWLGVLAPEHVLARRADDEFVLMLP-ATTEQAALALTQRLRTASPQDF---------- 289

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            S G ++W      ++ +L+ A++A+  A+  G N           S    I   L  A+
Sbjct: 290 -SAGVSAWNP-GEDAAPVLERADVALRRARSIGRNQTML-----ESSHLPSIAVQLRDAL 342

Query: 716 ENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
               + + Y PIIR    + ++G+EAL++W      ++ ++E + +AE+  +I A++ ++
Sbjct: 343 AAETVGVRYQPIIRLGEIDTVIGVEALLRWSPEFGSDLQANEVIRVAEDNDLIAALDQYV 402

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L R   D    + Q     + + +N++  +L++    + +   ++ T +  +++ L  +E
Sbjct: 403 LRRACLDAQWIQRQVTDLRLSLSVNVSGLELVEKGYVDRVVDTLAATGWPAAQLILEVTE 462

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK 894
           SV+  +   S   L  LR  GI + +DDFGT  S LS L  +P D +K +GS  +  T  
Sbjct: 463 SVIDVDRPSSIYALHELRNHGIRVAIDDFGTGYSSLSRLQKLPTDLLKLDGSFTSSITSV 522

Query: 895 RIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +    LR++  +   +   I+ + +    +   L  MG    Q  H   P     ++ 
Sbjct: 523 SSSAPPFLRAVAGLGHALGLPIVVEGVETAHEATVLRGMGFAMAQGYHFGRPQTREDVVD 582


>gi|114319843|ref|YP_741526.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226237|gb|ABI56036.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 693

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/568 (19%), Positives = 204/568 (35%), Gaps = 24/568 (4%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSM 445
           +Q           +     R    +  S D +  +      +   P      G      +
Sbjct: 126 LQERRRLRRLESSVRETERRCRALLDSSRDPI-AYVHEGMHIYANPAYLEKFGHDDLADI 184

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADN-QFHWMIIRIRPMSN 504
            G     L  +   D+   +  L  F      R +    +  AD  +   M +    + +
Sbjct: 185 EGTPI--LDMVVEADQGKCKEALRRFSRGDLTRHEVTIGLLTADGPEEVTMALTPAMVED 242

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS-ATDDN 563
                     +   ++E +  LE +      D  TG+ NR  FLD L +++  +      
Sbjct: 243 EP-----CTQVLLQVSELEADLEQLNRQ---DTTTGLYNRSYFLDHLDSLIARNLDAGGR 294

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ + ++K   I + +G+A  D VL  + +RI   +   DI  RLS   F I+L  
Sbjct: 295 NSHALLYLQLEKLSHIRERMGLAAVDRVLAHVAQRISAQVGEEDIPCRLSDEEFAILLER 354

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
                 +       +      I +    + VT +IG A   ++   +   +  A  A   
Sbjct: 355 SKIDHAMDLAETLRQDIEEQVIEVDGSTLAVTCAIGVAMVGTNADNAQAAIDMAYAASET 414

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDL----CLAVENSELYLVYHPIIR--LMDEEIVG 737
           A   GGN V+    S    +    +  L       +E  E YLV+ P+I      +    
Sbjct: 415 ALRAGGNQVQLHASSQEVMETQQREARLRERVRHCLEQDEFYLVFQPVIALTESHQWDEL 474

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            E  I+    +   I   EF+  AE+  ++  I+ ++  R        R       +F+ 
Sbjct: 475 YELRIRMPDEQGREIEPLEFLPHAEQAGLLGEIDRWVTRRAVALAAERRRLGKRVCLFVK 534

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
             +    L D    + +   +      P+ +    +E VV+    +++ L   L ++G  
Sbjct: 535 --LDGATLTDPGFLDLLSEELEHHQADPATLVFQLNEPVVVTQLNQAKALQQGLDRLGCK 592

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L+LD FG+  +    L ++  D VK + SL      TE+   ++R II  A  +   ++A
Sbjct: 593 LSLDHFGSALNPFQLLKHLHSDLVKLDDSLTADIEQTEENQRLVRQIIETAHQMGQQVVA 652

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +     +  +   G DY+Q   +  P
Sbjct: 653 GYLGSPAALALMWEYGADYVQGDFLQEP 680


>gi|300786236|ref|YP_003766527.1| signal transduction protein [Amycolatopsis mediterranei U32]
 gi|299795750|gb|ADJ46125.1| signal transduction protein [Amycolatopsis mediterranei U32]
          Length = 696

 Score =  282 bits (721), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 203/567 (35%), Gaps = 37/567 (6%)

Query: 391 LATGYFSQGIFSDG----ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
            A     Q           +      GS   V   ++    +     +A  L      + 
Sbjct: 146 RALLKVEQETRQKHVITRAQFEEVFAGSASGVALTELDGRVLRANAALAKTLNRTPAEIA 205

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    +H  D +  R      V  R  RL+   R+   D +  W       + ++ 
Sbjct: 206 --AMTLFDLVHPEDVEQLRESYRELVAGRLHRLRAGRRLVGRDGEPMWATFAAAVIRDAL 263

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           G   + + I +D TE       +   A  D LTG+PNRQ F  RL T+L  +  D     
Sbjct: 264 GTPRQLLTIVDDDTEVSLLQRRLSHQALHDVLTGLPNRQFFSTRLETLLRDA--DPAHGV 321

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISEN 625
           T+  +D+D + +IN  LG  +GD VL  +  ++  + +    ++ARL G+ FG+++ +  
Sbjct: 322 TLFHLDLDGFSQINGGLGRELGDRVLRGVAAKLKIVFEAEKALVARLDGDEFGVLVQNTA 381

Query: 626 NSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++  +      +    A       +  + V+A+IG         T +E+L+ ++L +  A
Sbjct: 382 DTPGVVTLVRRITHEFAEAEYVDGQHGVAVSAAIGVVHRPPRDSTPAELLQASDLTLRRA 441

Query: 685 KHRGGNHV-ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           +  G                   +   +  A EN E+   Y  ++      + G+EA ++
Sbjct: 442 QRTGNQWGLFDREWDRRDRHDFGLAASMAGAWENGEVEARYRVLVSATSGSVEGVEARLR 501

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           W+HP  G +     + +A E  +   +  ++L   A  + +     +   + +++ + ++
Sbjct: 502 WNHPAEGVLPHETCVRLAAETGLALPLGTWLLRTAAERLAA-----SGIGVPLVVELTAQ 556

Query: 804 DLLDNELCEGMQALISKTLYSPSRIK--LSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              D EL   +  ++  T  +P R++                +      L +IG+   + 
Sbjct: 557 QAADPELVGEIHRVLGDTGLAPDRLRPGF------PAAETGDAADNFKVLGEIGVRAEI- 609

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-----IAILRSIIPMAKNIETTIIAK 916
                   +S L   P   V+           KR      A L ++I  A     ++   
Sbjct: 610 ---HGLGDVSCLTEFPARAVRI----AANLAAKREHPLVAAPLSALIDAAHAAGASVSVA 662

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASP 943
            I    +       G D +       P
Sbjct: 663 GIGTADEAAWWRDRGVDLLSGPAFPEP 689


>gi|74312592|ref|YP_311011.1| putative sensor protein [Shigella sonnei Ss046]
 gi|73856069|gb|AAZ88776.1| putative sensor-type protein [Shigella sonnei Ss046]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +L+  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLQLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 83.5 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 107/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+ ++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWERELKPNVFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|126665376|ref|ZP_01736358.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter sp. ELB17]
 gi|126630004|gb|EBA00620.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Marinobacter sp. ELB17]
          Length = 252

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 8/248 (3%)

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           L Y P + L   E+VG EALI+W HP+ G ++ ++F+ + E   +   +  ++L      
Sbjct: 2   LFYQPKVNLKSGEVVGAEALIRWQHPERGLVAPNDFLPLIEHHPLSVDLGEWVLNSALSQ 61

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL-YSPSRIKLSFSESVVMGN 840
           ++ WR Q     I + +NI S  L      E ++A++S     S  +I+L   E+  + N
Sbjct: 62  MMEWRQQ--SVLIPVSVNINSLHLRQPNFVERLEAILSLYPSISSGQIELEIVETSSLDN 119

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAI 898
            E     +   RK+G+  +LDDFGT  S LSYL  +P + +K + S +          AI
Sbjct: 120 LEVVSKTIEACRKLGVICSLDDFGTGYSSLSYLRRLPVEKLKIDMSFVRDMLIDPSDFAI 179

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF- 957
           ++ I+ +A++    +IA+ +      ++L ++GCD+ Q   +A P+   ++   +++   
Sbjct: 180 VQGILVLARSFGLGVIAEGVETPEHSEQLVKLGCDFGQGYGIARPMPAEAMPDWIRQWNE 239

Query: 958 --PLVKNT 963
             P  K T
Sbjct: 240 SSPAAKRT 247


>gi|331653495|ref|ZP_08354496.1| putative sensor-type protein [Escherichia coli M718]
 gi|331048344|gb|EGI20420.1| putative sensor-type protein [Escherichia coli M718]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNVFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|293376061|ref|ZP_06622313.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Turicibacter sanguinis PC909]
 gi|292645319|gb|EFF63377.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Turicibacter sanguinis PC909]
          Length = 245

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 138/246 (56%), Gaps = 4/246 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           DL  A++N+E+ L Y P     D+++ G EAL +WD+PK+ ++S  + + + EE  MI  
Sbjct: 2   DLRDAIKNNEITLFYQPQYTC-DKQLQGFEALFRWDNPKYQHVSIIDIIKMIEECRMIDE 60

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++E   R      ++ +   + + +NI++  ++++   +  ++LI K   SPS I 
Sbjct: 61  IGDYIIEHSCR-FAKKVNEYSTKLLVVSMNISALQIMNHNFVDKFKSLIEKVGVSPSLIG 119

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E+V+M N + +   L  L+ +G+ ++LDDFGT  S L+YL ++P   VK + S + 
Sbjct: 120 IEITETVLMENMKENTKKLKALKALGVKISLDDFGTGYSSLNYLVHLPLSQVKIDQSFVR 179

Query: 890 GSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G ++    I  ++ I+ +A  +   ++A+ +  E D+K L  +  DYIQ  + + P+   
Sbjct: 180 GMSQGEEFIRLVKLIVNIAHTLSLPVVAEGVEYEEDLKLLQSLKIDYIQGYYFSKPVCEE 239

Query: 948 SILKLL 953
             LKL+
Sbjct: 240 EALKLI 245


>gi|218681177|ref|ZP_03529074.1| putative sensory box/GGDEF family protein [Rhizobium etli CIAT 894]
          Length = 532

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 176/380 (46%), Gaps = 8/380 (2%)

Query: 520 TEQKKSLE---GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           TE +++L+    +   A  D LTG+ NR SF + L  +            +++++D+D +
Sbjct: 76  TEHRRTLDFEIKLTHLAHTDTLTGLGNRSSFNEALNGLFASLERT-GAGFSMLLVDLDHF 134

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K  ND  G   GD VL  +   + +  +  DI+ARL G+ F  +L   +++  +   A  
Sbjct: 135 KATNDSFGHPAGDAVLSHVASALQKTFRAGDIVARLGGDEFAALLPGISDAATLEGIAER 194

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESF 695
              +IA   +   R + V+AS+G A         + +++ A+LA+Y AK  R    +   
Sbjct: 195 AVAAIATECHFEGRLLPVSASLGGALVPGHASDEAALMRTADLALYAAKARRNTAVIFDE 254

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
              + R ++  +   L +A +  E  + Y   + L   E +G EAL++W HP+ G +   
Sbjct: 255 ASFAQRLEQNRLAAALAVAADRDEFVVYYQQKVNLQTGEHLGFEALVRWRHPQLGILPPG 314

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + E   +I+++   ++  +ARD+ +W+         + IN+    L+ ++    + 
Sbjct: 315 RFLPLME-GHLIQSMTRCIVNTVARDLKTWKTAGFRAG-SVAINLPEALLVGDDGYTLIA 372

Query: 816 ALISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           A +           +  +E V +     +    + R R  G+S++LDDFGT  + L +L 
Sbjct: 373 AAVEANDLDWLDFAIEVTEDVFLNRGANQIAETISRFRGRGVSVSLDDFGTGFASLVHLR 432

Query: 875 YIPFDTVKFNGSLMTGSTEK 894
             PFD +K + S +    + 
Sbjct: 433 DFPFDELKIDRSFVAEIGKD 452


>gi|71905775|ref|YP_283362.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
 gi|71845396|gb|AAZ44892.1| diguanylate cyclase/phosphodiesterase [Dechloromonas aromatica RCB]
          Length = 694

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 88/424 (20%), Positives = 172/424 (40%), Gaps = 9/424 (2%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T  +++   +   A  D LTG+ NR+ F  RL   L  S         ++ +D+D++K++
Sbjct: 253 TRIEEATAQLAFQARHDALTGLLNRREFEHRLEKALA-SVQAGGDEFAILFLDLDRFKQV 311

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G   GD++L  +       L+  D LARL G+ F I+L +   +  +         
Sbjct: 312 NDTCGYLAGDELLRQMALLFQGRLREEDTLARLGGDEFSIMLANCTGARALQVADDICGL 371

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG---NHVESFR 696
           + A      ++   + AS+G  +        +E+L   + A + AK  G       E   
Sbjct: 372 AAAYRFIWQDKVFAIGASVGITTVNRKVRNINEILAAGDAACHRAKESGRNRVCEQEVTF 431

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEALIQWDHPKWGNISSS 755
               R +       +  A+    L +   P+  L        +E   + + P    ++ +
Sbjct: 432 NQERRHEASNWASRIANALSEDRLLVEAVPLRALQHAASGHVVELTARLNEPGQPPVALA 491

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
             +  AE   +  AI+  +++         R +     ++ L+ ++   +   E  + + 
Sbjct: 492 ALIDAAERYDLAPAIDRRLIDTAI--AAQARAKRQHRNLYCLVPLSRSSISSRETIDYIA 549

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +S    + +++   FSE ++     ++     ++  +G  + LDDFG   S  S+L  
Sbjct: 550 RSLSSQNMAGNKLCFMFSEDILTHLTSQAMEFSRQVHTLGCQIGLDDFGGGLSSFSHLRS 609

Query: 876 IPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           I    VK + SL       R   A+LR++  +  +     IA+DI     +++L  +G D
Sbjct: 610 ITPSHVKLSRSLTRDLGGNRASTALLRAVQEITADQHIRSIAEDIDDLDTLEQLKDLGID 669

Query: 934 YIQD 937
           Y Q 
Sbjct: 670 YAQG 673


>gi|320198759|gb|EFW73359.1| putative sensor protein [Escherichia coli EC4100B]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDQRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|157155968|ref|YP_001463420.1| putative sensor protein [Escherichia coli E24377A]
 gi|157077998|gb|ABV17706.1| sensory box-containing diguanylate cyclase [Escherichia coli E24377A]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLIEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|315500264|ref|YP_004089067.1| diguanylate phosphodiesterase [Asticcacaulis excentricus CB 48]
 gi|315418276|gb|ADU14916.1| diguanylate phosphodiesterase [Asticcacaulis excentricus CB 48]
          Length = 773

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 167/406 (41%), Gaps = 11/406 (2%)

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +      D  +  ++   I +Y ++   L       ++  +  R+ EL      L    
Sbjct: 369 AIRHEDRLDGRQ--LVAARIRRYAEMVSALPPEAERLLVKEIVARL-ELGAGGAQLYHGD 425

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
              F   L +  +   + +   A+      PI        V  S G        +  S  
Sbjct: 426 DGNFFW-LSNLYDHDLLIEQFTALHVIFRSPIRFARNSFDVDISFGVD--REFDLPVSHR 482

Query: 674 LKNAELAMYHAKHRG-GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
           L +A  A + A+  G    +      S +   + +  +L  A++  ++++ Y P + L  
Sbjct: 483 LTSALAAAHSAEQDGTRWRLHDPSQISEKEWNLSLLGELDDALDAGKIWVAYQPKMDLYS 542

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           +E++G EAL++W H   G +S  EF+ +AE    I  +  F+L    +   +       P
Sbjct: 543 KELLGAEALVRWTHETRGPVSPLEFVEMAERHGRIDRLTDFVLNDALKVAKTV--LLTKP 600

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              I +NI+   L  +++ + ++A + +    PS + L  +E+  +   E   LL+   R
Sbjct: 601 EFRISVNISPSLLTSHDIMDTVKAALDRHQVPPSCLILEVTETHAIAQNETPSLLMAEFR 660

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIE 910
            +GI L++DD+GT  S L YL  IP   +K +        E     A+++S I +A  + 
Sbjct: 661 DMGIGLSIDDYGTGLSTLEYLRKIPATELKIDRRFTQDICENKADRAVMKSTIQLAHALG 720

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
              +A+ I     +  L RMGCD  Q  ++A P+   + L  +   
Sbjct: 721 MKAVAEGIETLEVLSLLARMGCDTGQGYYIARPMDAKAFLARMAAE 766


>gi|318041794|ref|ZP_07973750.1| GAF domain/GGDEF domain/EAL domain-containing protein
           [Synechococcus sp. CB0101]
          Length = 618

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 169/405 (41%), Gaps = 6/405 (1%)

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +        VM ++  + ++I + LG A    +   L  R+  LL        L+   + 
Sbjct: 208 SQSSQAYFGVMRLEFKELRRIANALGEATAKVLRQELQERLAALLPDNASCCELNDQEWL 267

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++        ++   A A+ + +  P+ + ++ ++   ++G A +  +  +++++L +A 
Sbjct: 268 VLTPFTATDEQLGALAAAITQQLQQPVGVAQQLLSSQVAVGAALFQGNYSSANDLLSDAA 327

Query: 679 LAMYHAKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           +A+ +A  R G+H               + ++ +L   +   +L   + P+  L  ++++
Sbjct: 328 IALRNAARRPGSHYSCIDLASRIQAQQDLQLESELRRGLSTGQLEPHFQPLFDLQTKQLM 387

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+EAL +W       +  S F+  AE   ++  ++L M+ +      +         + +
Sbjct: 388 GMEALARWRSVNGDLLMPSLFLAAAERAELLGELDLQMIRQSIAASHAMARVHPQQAMVL 447

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPS-RIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            +N++   L    L + + ALI      P+ +++L   E  +          L +L + G
Sbjct: 448 SLNLSGALLESPTLLDVLFALIDAEPLPPNWQLQLEMLEVNLQQPEADIAHTLDQLHQRG 507

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI---AILRSIIPMAKNIETT 912
           + L +DDFGT  S LS L   PF ++K + S +            IL  I  MA+ +E  
Sbjct: 508 VLLAIDDFGTGYSSLSRLNRFPFHSLKVDMSFVKLLDAPDQPSNRILEVIQAMAEALELH 567

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
             A+ +  E     L R G  + Q   +A P+     L LL    
Sbjct: 568 TTAEGVETEAQRLWLQRQGFHWGQGYLLAKPMPLQETLNLLLTHQ 612


>gi|331677977|ref|ZP_08378652.1| putative sensor-type protein [Escherichia coli H591]
 gi|331074437|gb|EGI45757.1| putative sensor-type protein [Escherichia coli H591]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|312973685|ref|ZP_07787857.1| uncharacterized protein yegE [Escherichia coli 1827-70]
 gi|310332280|gb|EFP99515.1| uncharacterized protein yegE [Escherichia coli 1827-70]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A +  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHAFDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIILSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMTHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|256017761|ref|ZP_05431626.1| putative sensor protein [Shigella sp. D9]
 gi|332278779|ref|ZP_08391192.1| sensory box-containing diguanylate cyclase [Shigella sp. D9]
 gi|332101131|gb|EGJ04477.1| sensory box-containing diguanylate cyclase [Shigella sp. D9]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  +L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQLRMLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKTVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|268679385|ref|YP_003303816.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617416|gb|ACZ11781.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 647

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/607 (15%), Positives = 210/607 (34%), Gaps = 54/607 (8%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD---GERQ 407
            +   +  T      +           + +    T +Q +L T    +         E+ 
Sbjct: 78  IVLSELHETHLFPQTVTIGVDGYLFKPLSLAQFATTLQKILDTIILRRENRQKTLLLEQY 137

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
                 S  I+   D     +        I G     + G   N +   H +   +    
Sbjct: 138 KQVTNASS-IISKTDAKGRIIYVNEQFCRISGYEEKELLGKSHNIIR--HPDMPRSTFEE 194

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +   +   Q   + R+ + + +++   I+P+ N++G++  YI + +DIT      +
Sbjct: 195 LWHTIKTEKKIWQGIVKNRSKNGKSYYVKTTIQPLLNAHGEVEEYISLRHDITAIMSDKK 254

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                                D L           +    +++I I+ Y  +      A 
Sbjct: 255 Q------------------LFDFLEA---------HKLCVLILIQIEDYAILEKFYDKAS 287

Query: 588 GDDVLVSLTRRIGELL---KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-- 642
              +  +  + +  L+        +  L    +  ++   +      +    + + ++  
Sbjct: 288 ISKIEQTFYKALLYLMPSICGFQKVYFLENGLYAFVIDRRSCQASKEELYETLEQFLSSV 347

Query: 643 --MPINLLERE--ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
               I +   E  I+V  S  +  +      +   + +A        +  G     +  +
Sbjct: 348 KEYIIKVDGIEYDISVVCSYTYGVF-KIFEDAKIGIDHAIATKESIIYADGLSDIEYHTA 406

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + + +   +  A+E   +   + PI+    ++I   E+L++  + +   ++   F+
Sbjct: 407 LKNIETLYM---IKTAIERQNILSYFQPIVNNQTQQIEKYESLVRLLNEEGDVLAPHAFL 463

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IA++      I   +LE     +         P + I IN++ +D+    + E +  L+
Sbjct: 464 DIAKKGRYSTKITKIVLENSFNALEKI------PKVAISINLSMQDIEQESILETIYTLL 517

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            +      R+     ES  M +  + +  +  ++  G+ + +DDFGT  S    L +   
Sbjct: 518 QRYKKHAPRLIFELLESENMKDVLQIKQFIHEVKAQGVKIAIDDFGTGYSNFERLLFFEP 577

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +GSL+      R    I+ +I+  AK  + T +A+ +  E   K +  MG DY Q
Sbjct: 578 DILKIDGSLIRNIHTNRVNQHIVETIMLFAKKQKLTTVAEFVENETIFKMVKDMGIDYSQ 637

Query: 937 DSHVASP 943
                 P
Sbjct: 638 GYFFGKP 644


>gi|323948450|gb|EGB44432.1| GGDEF domain-containing protein [Escherichia coli H120]
          Length = 1105

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNVFSWDKRMFELYEIPPH-IKPNWQVWFECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|332855541|ref|ZP_08435927.1| cyclic diguanylate phosphodiesterase domain protein [Acinetobacter
           baumannii 6013150]
 gi|332870222|ref|ZP_08439117.1| cyclic diguanylate phosphodiesterase domain protein [Acinetobacter
           baumannii 6013113]
 gi|332727398|gb|EGJ58830.1| cyclic diguanylate phosphodiesterase domain protein [Acinetobacter
           baumannii 6013150]
 gi|332732389|gb|EGJ63646.1| cyclic diguanylate phosphodiesterase domain protein [Acinetobacter
           baumannii 6013113]
          Length = 265

 Score =  281 bits (720), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G I + E
Sbjct: 1   MQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLGYIPTKE 59

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A    ++  I  ++L +  + +  W  +     + + INI++   + +     +  
Sbjct: 60  FIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNFEHTVIG 119

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S LSYL  +
Sbjct: 120 LVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSLSYLQKM 179

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +  + + + +  ++  II +  ++   ++ + I            GC  
Sbjct: 180 PIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFKSNGCTE 239

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q      P+  N  +K L
Sbjct: 240 FQGYLWGCPMSLNDFIKQL 258


>gi|77920300|ref|YP_358115.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546383|gb|ABA89945.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Pelobacter carbinolicus DSM 2380]
          Length = 429

 Score =  281 bits (720), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/317 (27%), Positives = 146/317 (46%), Gaps = 12/317 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV-RDRVTTTPDIATILGLASGSM 445
           I+  L      +      E+  L      D+ W      ++ +  +P    I G     +
Sbjct: 115 IELALHKHALQRQAEESEEKFRLVTESIDDVFWLSTADLKELIYVSPAYEKIWGRRREEL 174

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           H    ++L  +H  DR   R++LD         LQ E+R+   D    W+  R  P+S+ 
Sbjct: 175 HDAPLSFLEGVHPEDRSAVRSLLD---HPPLESLQLEYRIVRPDGSISWVRDRRFPVSDP 231

Query: 506 NGDILRYIGIANDITEQKKSL-------EGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
            G   R  G+  DITEQK +          +   A  D+LTG+PNR+  +DRL   L  +
Sbjct: 232 QGRPYRLAGVVTDITEQKDAQLQLLILNRKLQQQATHDSLTGLPNRRLLIDRLEQALARA 291

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             ++  R  ++ ID+D +K +ND LG   GD+VL  + RR+  LL+  D  ARL G+ FG
Sbjct: 292 RRNNG-RLAMLFIDLDGFKAVNDRLGHTAGDEVLEIIGRRLSHLLRSADTAARLGGDEFG 350

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    +    +  A  + ++IA P  + +    + ASIG + +    +++ +++  A+
Sbjct: 351 LVLSKIKDKQDASLVAQKVLEAIASPFIIRDERCYIGASIGISLYPEHGLSADDLISRAD 410

Query: 679 LAMYHAKHRGGNHVESF 695
            AMY  KH G      +
Sbjct: 411 TAMYKVKHSGKGTFAFY 427


>gi|213156385|ref|YP_002318805.1| diguanylate cyclase/phosphodiesterase [Acinetobacter baumannii
           AB0057]
 gi|301513272|ref|ZP_07238509.1| EAL domain protein [Acinetobacter baumannii AB058]
 gi|301594881|ref|ZP_07239889.1| EAL domain protein [Acinetobacter baumannii AB059]
 gi|213055545|gb|ACJ40447.1| diguanylate cyclase/phosphodiesterase [Acinetobacter baumannii
           AB0057]
          Length = 255

 Score =  281 bits (720), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 3/249 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G I + EF+  A    +
Sbjct: 1   MEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLGYIPTKEFIPAAATFGL 59

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  I  ++L +  + +  W  +     + + INI++   + +     +  L+ +  ++PS
Sbjct: 60  MPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNFEHTVIGLVQRYDFNPS 119

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+ L  +E++ + N       +  L K GI L+LDDFGT  S LSYL  +P   +K + S
Sbjct: 120 RLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSLSYLQKMPIKQIKIDRS 179

Query: 887 LMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +  + + + +  ++  II +  ++   ++ + I            GC   Q      P+
Sbjct: 180 FVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFKSNGCTEFQGYLWGCPM 239

Query: 945 GFNSILKLL 953
             N  +K L
Sbjct: 240 SLNDFIKQL 248


>gi|331683750|ref|ZP_08384346.1| putative sensor-type protein [Escherichia coli H299]
 gi|331078702|gb|EGI49904.1| putative sensor-type protein [Escherichia coli H299]
          Length = 1105

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|307943175|ref|ZP_07658520.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
 gi|307773971|gb|EFO33187.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Roseibium sp. TrichSKD4]
          Length = 713

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 107/515 (20%), Positives = 204/515 (39%), Gaps = 26/515 (5%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH-INDRDNFRTILD 469
           +  + D  W+ +     V        I   +              +H       F+T++D
Sbjct: 179 LNIAADWTWERNADGRTV--------IHHCSKRPPSTSEDLLTHALHNPAYSARFKTLID 230

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
           S     R   + E +          + +   P+  SNGD L   GIA D++E++   + I
Sbjct: 231 S-----RVPFRDERQSVDVGTGKKTVSLSGEPVFTSNGDYLGCRGIARDVSEEEAYTKRI 285

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A +D LTG+ NR +F  +L    D      + R T+  +D+DK+K +ND  G A GD
Sbjct: 286 RFQAKRDPLTGLANRTTFKKQLKRTFDDWMEHGD-RATLFHLDLDKFKMLNDTYGHAFGD 344

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  + RR+  +      +ARL G+ F II  +    + I D A A+ +++  P+ +  
Sbjct: 345 QILKVVARRLKTIPSEEATIARLGGDEFAIIDPALFRRVAIKDCAQALIRTLNEPLEING 404

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI-- 707
             I +  SIG +       T  ++L NA+LA+Y AK  G N    F              
Sbjct: 405 TCIRLGCSIGVSVLPEDGATGEQLLGNADLALYSAKKAGRNRFHFFTPQMRGKVEAKETA 464

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           ++ +  A   +E+ L +  I  +  + ++G EA++     + G            +    
Sbjct: 465 RQAIGEAHRANEIGLKFLEIRDMDGDTLLGAEAVLTCARGEIGAQHMRALRFTLAQTDEA 524

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I    + R    +  W  Q      F+ + +      D  L + +  ++++T    S 
Sbjct: 525 VEIGTNFIRRACIQMADWN-QRLDTQKFVSVALNPAQAEDPNLSQTISRIVAETGLGYSN 583

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT-KCSLLSY----LGYIPFDTVK 882
           ++L+     +  +    +  L  L ++G++L L D+G+   S   Y    +  +  D  +
Sbjct: 584 LQLNILPESLRRDSVSLKRQLLHLSELGVALGLVDYGSLMVSPFHYVSAGIKKLNLDLSQ 643

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKD 917
            +          R ++ R+++  A  +   +    
Sbjct: 644 IDR---LDHHSTRQSLGRALVNFAHQLGCEVCVSG 675


>gi|319789553|ref|YP_004151186.1| diguanylate cyclase/phosphodiesterase [Thermovibrio ammonificans
           HB-1]
 gi|317114055|gb|ADU96545.1| diguanylate cyclase/phosphodiesterase [Thermovibrio ammonificans
           HB-1]
          Length = 768

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 180/434 (41%), Gaps = 35/434 (8%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   A++D +TG+ NR+ F + L  +       +       +++I  ++ +N++ 
Sbjct: 354 KMARSLRIVAYKDEITGLANRRKFFEDLRNL-------EGHNLHFAIVNIRNFRDLNELF 406

Query: 584 GIAVGDDVLVSLTRRIGELL-------KFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           G   G+ +L      +  ++            + R+ G++FG++    N+S  +      
Sbjct: 407 GFEGGNRILAEFASTLRRVVKARSKGDCKRCRVYRIRGDKFGVLGCDFNDSGFLDFIKKV 466

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           ++   +   +       +    G +           ML  AE+A   AK RG +      
Sbjct: 467 IKNLESKDFSYNNVNFKLDVVAGIS------KNKDNMLIEAEIAEEEAKKRGLDAFMFDE 520

Query: 697 VSSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
             +    ++     +   L  A+    +  V+ PI+ L   E V  EAL++        +
Sbjct: 521 DLNVIFKQLEENIKVATQLKKALAEDGVVPVFQPIVDLKTGEPVKYEALMRIKV-DGEVL 579

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S   F+ +A+++ + + ++  M+E+                + I +N++S+DL    +  
Sbjct: 580 SPGVFLPVAKKISIYRRLSRKMMEKAFEVAKE-------RGVRISVNLSSEDLAGGSMVN 632

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   + +      RI     E+    + +       ++++IG  L +DDFG+  S   Y
Sbjct: 633 WILTALKQYGI-ADRITFEVVETEAFSDIKALENFYFKIKEIGAYLAIDDFGSGYSNFEY 691

Query: 873 LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K +GSL+     +E+   +++ I+   K++    +A+ I  E  ++++  +
Sbjct: 692 LATVKPDFIKIDGSLIKKIPQSEEVEKLIKYIVAYCKDLNIKTVAEFISSEEILEKVKEL 751

Query: 931 GCDYIQDSHVASPL 944
           G DY Q  ++  P+
Sbjct: 752 GIDYGQGFYLGKPV 765


>gi|187730854|ref|YP_001879812.1| putative sensor protein [Shigella boydii CDC 3083-94]
 gi|187427846|gb|ACD07120.1| sensory box-containing diguanylate cyclase [Shigella boydii CDC
            3083-94]
          Length = 1105

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 203/562 (36%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++  + 
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWNC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L+  G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILEHAESV----QKLRLAGCRIVLNQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.1 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|288920847|ref|ZP_06415144.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288347744|gb|EFC82024.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 809

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 99/430 (23%), Positives = 181/430 (42%), Gaps = 20/430 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S   +   A  D LTG+ NR  F DRL   +   +     R  ++  D+D +K +ND L
Sbjct: 378 QSRRQLRHQALHDPLTGLANRVLFGDRLEHAVARPSR---GRLALLFCDLDDFKTVNDTL 434

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD++L    RR+   +   D +ARL G+ F ++L  E            +R ++  
Sbjct: 435 GHPAGDELLRLAARRLVGCVPPSDTVARLGGDEFAVLLEDET--ADAEAVGRRVRAAVGA 492

Query: 644 PINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
           P  L  +   V  SIG A     S I+S  +L+ A+LAMY AK RG + +  +       
Sbjct: 493 PCRLAGQPCAVQVSIGLAVAEPGSPISSESLLQQADLAMYAAKQRGKDSLVVYGPGLVAH 552

Query: 703 -----DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 R  + + L        L ++Y PI+ L     V  +A  +W HP  G+++  + 
Sbjct: 553 GGSSTARRALHQVLRGDPAGGVLDVLYQPIVDLTHGHPVAYQASTRWRHPILGHLTGEQT 612

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQAN-MPPIFILINIASKDLLDNELCEGMQA 816
           + +A    +   +   +L+R   DI  +R +      +++ +++A       +L   ++ 
Sbjct: 613 VAVAAGAGLSHQLEQVILDRACHDIGRYRRRTGKNVAVYVGVSVARST---RDLPADIET 669

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            ++ +      + L  SE+  +   E++   L      G+ L L+      + L  L  +
Sbjct: 670 ALAASHLPVQALVLRLSETERLD--EQAADSLRTCAARGLRLALNGIAGNHNSLLALDEL 727

Query: 877 PFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           P   + F+ SL   +         + R++I  A+++   +IA  +      + L R GC 
Sbjct: 728 PIGILMFDSSLGGRAAGSGGRADLLRRAVIAFAEDLGLMVIATGVQSRQQARSLARHGCR 787

Query: 934 YIQDSHVASP 943
           +        P
Sbjct: 788 FALGRLFGPP 797


>gi|301024730|ref|ZP_07188371.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 69-1]
 gi|300396423|gb|EFJ79961.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 69-1]
          Length = 747

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I +    +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITELDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHALQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|87121787|ref|ZP_01077674.1| hypothetical protein MED121_19604 [Marinomonas sp. MED121]
 gi|86163038|gb|EAQ64316.1| hypothetical protein MED121_19604 [Marinomonas sp. MED121]
          Length = 830

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 158/440 (35%), Gaps = 16/440 (3%)

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVG 588
                  D  TG+PNR+ +  +L   L            ++ I       +N V G    
Sbjct: 381 RQHQLVTDLHTGLPNRRFYFTQLQEELKKLTLTQG-SFALVTIQFTSQHSMNHVFGPEKA 439

Query: 589 DDVLVSLTRRIGELL--KFPDILARLSGNRFGIILIS--------ENNSLKIADFAIAMR 638
           D  +      +   L      ++  L       ++ +          +  KI      ++
Sbjct: 440 DIAIRQTALILNLHLLQHEDAVVFTLPNKEIASLIKTSTNTLAFLCKDKHKIGILIKELQ 499

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-HRGGNHVESFRV 697
            ++   +++   ++    SIG A +         + + + +A            + S R 
Sbjct: 500 STLDDIVSIEHFDMQHQYSIGAALYPEHSNHLDTLFRYSLIAADVNNLCNEPWSLFSQRY 559

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 +  +   L   V    L     P + L    I+G E LI+W + + G I   EF
Sbjct: 560 QVNHVYQHKLLARLKEDVREQRLSFEVQPQVELSSGRIIGGEVLIRWHNDEMGRIGPDEF 619

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   MI  I   ++ ++   +   R         + IN+++KD+L ++    +  L
Sbjct: 620 IPLAESAGMIYMITQMIINKVFAWVAENRHLIINR--HLSINVSAKDMLRSDFAHQVVNL 677

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             +   SP    L  +ES    +       +  L+  G  L++DDFG   S +  +  + 
Sbjct: 678 SLRHKVSPDSFILEVTESSFFEHNNTVENNIKTLKDAGFRLSIDDFGAGYSSMHSVMVLS 737

Query: 878 FDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +   +    +      + ++++ +   +    +A+ + G+  I +L   GC   
Sbjct: 738 PAEIKIDRMFIQNLHKDDANFTLCKTLVTLISELGAQTVAEGVEGQQTINQLLEWGCQIG 797

Query: 936 QDSHVASPLGFNSILKLLKE 955
           Q   +  P+   +  +L+ +
Sbjct: 798 QGFGLYKPMKPENYSELIHQ 817



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 99/353 (28%), Gaps = 12/353 (3%)

Query: 55  NQGEDFQVFTAADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVG 114
           N         A      S  +   +        W    L   S    +  +   +  +  
Sbjct: 35  NTRSSLNGREALHQLDFSNELYSESQGYSDAVFWHKIRLPLASKEIKQVELKFSNTMIDE 94

Query: 115 SHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGA----VVTFIMEISTPNL 170
            +F+    G +       S+    +  PNSD D   +T+         +    + ++  L
Sbjct: 95  LNFYLLTNGRQIKSWQKGSQQ---EWYPNSDKDAIWLTLPLSEKFESQLLIRKKSNSSLL 151

Query: 171 PQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLG 230
             +  +     ++      +    +     LL ++    Y   RS+  I    +   ++ 
Sbjct: 152 SPMAFYLDKAAENAKIEQKVIWTFLSSALLLLLLYNIAVYSFFRSAAFIYYLVLNVSLIL 211

Query: 231 YISIDFGFLSKLVNLP-SGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSG 289
            I I  G    L+       L  ++A   I    S+      +LH    H  +    F G
Sbjct: 212 DICITSGMGVWLLPDAIFTFLNQFKASINILTLWSIYRLSLYFLHIESAHPSLWKKRFYG 271

Query: 290 IACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAV-LLIPAWILIF 348
              +     +S +       ++ I L  ++       +    K    A+   + AW  + 
Sbjct: 272 DFVLGFYLLISTFISHQELIVSFIGLQLLISGGCLITLSTVGKNKSWAIKSYLIAWSCVI 331

Query: 349 IWFIGLWMAITKRLDNDII---QPALVGGLVLIVILIGFTVIQHVLATGYFSQ 398
                  +     +  + I      +   + LI     F    H        Q
Sbjct: 332 FGSCISSLIFLNIIPYNNISANIYPISTIIELIGFSFAFAENSHSNKVSRQHQ 384


>gi|260881455|ref|ZP_05404445.2| putative GGDEF domain protein [Mitsuokella multacida DSM 20544]
 gi|260848473|gb|EEX68480.1| putative GGDEF domain protein [Mitsuokella multacida DSM 20544]
          Length = 504

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/430 (20%), Positives = 172/430 (40%), Gaps = 18/430 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D  TG+ NR  F D     L   +TD   R  ++ I I +   + +  G  V  ++L  
Sbjct: 84  TDLQTGLHNRSWFRDEAGHYLKEHSTDS--RLAIVKIAISRRDILVETYGQDVITELLRR 141

Query: 595 LTRRIGELLKFPDILARLSGNR--FGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           +   + +           S  +  F +   +  +  ++ +    +   +   I++    +
Sbjct: 142 MEATLQQTEWAKLPAVHTSTGKVLFLMRTDAFASQEQVQEALTQLMH-LNEYISIGHLVV 200

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
            +T  +G        +  ++ + +A+LA++ A         +  +      +  I     
Sbjct: 201 HITFHVGICPLRP-GLPIADAMNHADLALHEAH---PICFYNAELQQKAEFQSRIDSLQQ 256

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+   E  + Y P   L+  + +G E L++W   + G ++  +F+   E    I  ++ 
Sbjct: 257 RALARKEFEVWYQPKYDLVTRKCIGAEVLVRWRSRELGFLAPGQFIPRFESNGFITQLDF 316

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +ML R+       R    +P + I +N +   + +      MQ L  KT Y    I+L  
Sbjct: 317 YMLSRVMEFQKR-RHATGVPVVTISVNQSRLHMQEKNYLTYMQRL--KTYYEARDIELEL 373

Query: 833 SESVVMGNP----ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +E+    N     + +  ++  L ++G  L+LDDFG+  S L+ L  IP D +K + SL+
Sbjct: 374 TETAFDLNTPELRQHALHVMRALHEMGFRLSLDDFGSGYSDLTLLNAIPLDVMKIDRSLL 433

Query: 889 --TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +  T++  A+L  +I +   +  T+I + I        L   GCD  Q      P+  
Sbjct: 434 LASQGTKRMQAVLARMIDLGHALSMTVICEGIETREQEDMLRSCGCDQGQGYLYGKPMPE 493

Query: 947 NSILKLLKER 956
                 L + 
Sbjct: 494 EEFELFLLQH 503


>gi|320177891|gb|EFW52875.1| putative sensor protein [Shigella boydii ATCC 9905]
          Length = 1105

 Score =  281 bits (719), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I   +F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQKFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLNS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESV----QKLRLAGCRIVLRQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 93.5 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLSLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 90.4 bits (223), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLSLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|260555565|ref|ZP_05827786.1| EAL domain-containing protein [Acinetobacter baumannii ATCC 19606]
 gi|260412107|gb|EEX05404.1| EAL domain-containing protein [Acinetobacter baumannii ATCC 19606]
          Length = 362

 Score =  281 bits (719), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 121/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 92  CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 150

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L    + +  W  +     + + INI++   + +  
Sbjct: 151 YIPTKEFIPAAATFGLMPEIGEWVLAEACKVLQDWSKKEETKDLTLSINISADHFMQSNF 210

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 211 EHTVIGLVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 270

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II + +++   ++ + I          
Sbjct: 271 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGQDLNLRVLVEGIETAEQFSAFK 330

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 331 SNGCTEFQGYLWGCPMSLNDFIKQL 355


>gi|297539835|ref|YP_003675604.1| PAS/PAC sensor-containing diguanylate cyclase [Methylotenera sp.
           301]
 gi|297259182|gb|ADI31027.1| diguanylate cyclase with PAS/PAC sensor [Methylotenera sp. 301]
          Length = 473

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 186/468 (39%), Gaps = 34/468 (7%)

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY 302
            +     L +  + + I L+   I     Y  W R       + F GI  +   F +S  
Sbjct: 19  WSPTLLWLYV-LSDAAIVLAYYSIPVTLTYFVWRRKD-----LQFRGIFLLFSAFILSCG 72

Query: 303 YPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRL 362
              +   +              + +   MK    ++ ++ A  L++I    L +    + 
Sbjct: 73  TTHLLEIVTFWNP--------IYWVDASMKAVTASISVVTAIALVYITPQALKLPSPSQY 124

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
           D ++ +           +      +  +         + +  +R  L +  S    WDWD
Sbjct: 125 DKEVYEHLNAYEA----LKAAQASLIELDEYKKSEAALHASEQRLQLVLKASQLGFWDWD 180

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE 482
           I  + VT     A +LG    ++   +R W  ++H +DR+     +   +  R      E
Sbjct: 181 IKNNIVTRNERWAEMLGYELSNIEITVRQWADFVHPDDREMAWQSVRDNIEGRTQMHALE 240

Query: 483 FRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           +R+R    ++ W++ + + +  +++    R  G   DITE+K   E +   AF D LT +
Sbjct: 241 YRMRTKSGEYKWVLDQAQVVSWDADHKATRMCGTHTDITERKNMEEQVRNFAFYDTLTQL 300

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           PNR+   DRLT  +  S         +M +D+D +K IND  G   GD +L+    R+  
Sbjct: 301 PNRRLLGDRLTKAISTSKRS-GYYGALMFLDLDNFKPINDAHGHQAGDLLLIEAASRLKG 359

Query: 602 LLKFPDILARLSGNRFGIILISEN-----NSLKIADFAIAMRKSIAMPINL--------- 647
            ++  D +ARL G+ F +IL   +     +  +    A  +   ++ P  L         
Sbjct: 360 CIREVDTVARLGGDEFVVILSELSLDEAESISETKLVAEKILDVLSKPYLLTVTHTGQKD 419

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
              E+  TASIG   +     +  +++K A+ AMY AK  G N +  +
Sbjct: 420 KVVELECTASIGAVVFVKDHASQIDLMKWADAAMYKAKDEGRNLIRLY 467


>gi|323961297|gb|EGB56909.1| EAL domain-containing protein [Escherichia coli H489]
 gi|323970974|gb|EGB66223.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 618

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 179 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 227

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 228 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 287

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 288 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 346

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 347 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 404

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 405 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 462

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 463 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 522

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 523 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 582

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 583 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 618


>gi|193064765|ref|ZP_03045843.1| inner membrane protein YfgF [Escherichia coli E22]
 gi|192927648|gb|EDV82264.1| inner membrane protein YfgF [Escherichia coli E22]
          Length = 683

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 244 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 292

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 293 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 352

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 353 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 411

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 412 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 469

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 470 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 527

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 528 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 587

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 588 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 647

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 648 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 683


>gi|88812694|ref|ZP_01127941.1| multisensor diguanylate cyclase/phosphodiesterase [Nitrococcus
           mobilis Nb-231]
 gi|88790110|gb|EAR21230.1| multisensor diguanylate cyclase/phosphodiesterase [Nitrococcus
           mobilis Nb-231]
          Length = 693

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 110/574 (19%), Positives = 214/574 (37%), Gaps = 17/574 (2%)

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +V+      ++       F   +     R    +  S D +  +      +         
Sbjct: 118 LVVEREVRNLRERRRLYQFETALRETERRCHALLDNSRDAI-AYVHEGMHIYANAAYLER 176

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF--HWM 495
            G+  G     +   L  I ++D+ +F+  L  +   +      E  +R    +     M
Sbjct: 177 FGMDRGEAIEGMPI-LDLIAVDDQAHFKDFLRRYSQGKHNEDHLEISIRGPKGETQAVVM 235

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
                 +   +G+    I +    T      + +   + +D LTG+ NR+ FL++L   L
Sbjct: 236 HFSGASI---DGEPCTQILMRGKATG---LEQELANLSRRDMLTGLFNRKYFLEQLDRSL 289

Query: 556 D-LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
                  +     ++ + ID  +  +  LGI   + VL  + R I       DI A  + 
Sbjct: 290 AEQPPAGEGASLGLLYLQIDNLEAAHASLGITSVELVLSDIARLIEGQTGENDIAAHYAN 349

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
             F I+L +      I       +           R IT + SIG A  +     +S+ +
Sbjct: 350 AVFTILLPNRTVHEAIGLAEALRQSIEEHVSEADNRTITKSCSIGIAMLSEGGANASQAI 409

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMD 732
             A  A   A+  GGN +     +    +      K  L  A+ +   YLVY P++ L  
Sbjct: 410 NLAAEASEAARREGGNRIHLHATAGQSGNESGSDWKSRLEHALADEAFYLVYQPMVSLSG 469

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
           ++    E  ++        ++  +FM  A++  +  AI+ ++ + +   I   R   + P
Sbjct: 470 DQTERYETRLRLSADNGQFLAPRDFMPFADQCGLTPAIDRWLTQTVLAAIAQRRAAGHEP 529

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            +FI I      L D E    + + + +     + +    SE V M   ++++     ++
Sbjct: 530 HVFIKI--TGGTLGDPEFLPFLTSQLERLDVKGTNLVFELSEPVAMTQLKQAKAFRQGVK 587

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIE 910
           ++G S  LD FG + +    L +IP D +K + SL    T+  +    LR I+  A  + 
Sbjct: 588 ELGCSFALDQFGREFNSFQLLKHIPADYLKLDRSLCVDLTDSVETQRKLRQIVDTAHTMG 647

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +IA  +     +  L +   D +Q   +  P+
Sbjct: 648 KQVIAGFLEEATALATLWQYKVDLVQGHFLQEPV 681


>gi|331664061|ref|ZP_08364971.1| inner membrane protein YfgF [Escherichia coli TA143]
 gi|284922450|emb|CBG35537.1| putative signal transduction protein [Escherichia coli 042]
 gi|331059860|gb|EGI31837.1| inner membrane protein YfgF [Escherichia coli TA143]
          Length = 747

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+     I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVARRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHALQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|223039159|ref|ZP_03609449.1| mechanosensitive ion channel family protein [Campylobacter rectus
           RM3267]
 gi|222879520|gb|EEF14611.1| mechanosensitive ion channel family protein [Campylobacter rectus
           RM3267]
          Length = 811

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/607 (14%), Positives = 213/607 (35%), Gaps = 42/607 (6%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            +  ++  +    VL  + + F  + +  A             R   AV  S + +   D
Sbjct: 229 ASSNLRGTMALVFVLFALALVFIYLSYARAKSN-----IRLLNRFEQAVNHSFNAITFTD 283

Query: 423 IVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQY 481
           + +             G     +     N +   +H   ++ ++ ++++    +  R   
Sbjct: 284 LDKKIKYVNKIFERNFGYEFKELKDKNINLIKSNMHP--KEFYQDMIETIENNQIWRAD- 340

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------EQKKSLEGILCNAF 534
           +   +    +     +   P+ N NGD   Y+ I  D T       E +   + +   A 
Sbjct: 341 DLISKTKSGELIREQVIFSPLFNENGDKDGYMSIKFDRTKEIAMTKELENKNKELQNEAL 400

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +  +   R+            +   ++ I+I+ +            D ++ S
Sbjct: 401 TDKLTGLGSYFALTQRMEQ---------GVSGMIIYININNFMDFRFFYKTKTVDAIIAS 451

Query: 595 LTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
               +   +        + R+  + F I    E     +  F    + +         +E
Sbjct: 452 FAATLKLCIDTYKMDADIYRVQFDEFCIWYGGEEVDRDVHRFMDYFKANDLYITVDGVKE 511

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVESFRVSSFRSDRVMIK 708
                 I            +  L  A LA + AK +      + E+  +        ++ 
Sbjct: 512 FIPNIKITIGVSMPQDTPQTNRLTQAMLAHHEAKQKEEVAQFYTENSHIEQQYYHNQIMS 571

Query: 709 EDLCLAVENSELYLVYHPIIRLMDE--EIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             +  A+ N  + +   PI  +  E   I   E L++            EF+ IA+++ +
Sbjct: 572 RTIENALYNDTVIVECQPIYDVSGEGTRIKYYEVLVRLIDENGKIRYPGEFLDIAKKISL 631

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              I   ++E + R +  +            +N++S D+ +  + + ++  +     +P 
Sbjct: 632 YNDITKKVVEHVFRLVEKF------TNTSFSMNLSSSDIANESIRDLIEKKLRVCS-NPE 684

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            +     ES  + + +     + ++R     +++DDFG+  S    +  +  DT+K +GS
Sbjct: 685 HVYFEILESEGVDDYKIVNDFINKIRAYDCKISIDDFGSGYSNYYRILELDIDTIKIDGS 744

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           ++      +    +L++II  A      ++A+ +  E  + E+ + G  Y Q   +  P 
Sbjct: 745 IIKKLPFDKNARYLLQTIIDFAGRQGYNVVAEFVSSEEILAEIKKFGIKYAQGFLLGKPT 804

Query: 945 GFNSILK 951
             ++I +
Sbjct: 805 SPSNIEE 811


>gi|163792774|ref|ZP_02186751.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [alpha
           proteobacterium BAL199]
 gi|159182479|gb|EDP66988.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [alpha
           proteobacterium BAL199]
          Length = 585

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 179/424 (42%), Gaps = 27/424 (6%)

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-----PDILA 610
                  + +P V+ +D   Y ++ +  G       + ++   + E ++           
Sbjct: 160 HRLMDQPSEKPYVVAVDFGLYDRLRETYGQETAARYVRAVAGYLAEAVQASTAPLNTRST 219

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE---------------REITVT 655
           R+ G+ FG +L +  +   +     A+   +   ++L E                 + VT
Sbjct: 220 RIQGDVFGFLLPN--DPDALPRTIDAVLGHLPHWVSLDEPYSDQSIARADAAEPIVLPVT 277

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLA 714
           A +G A    +  TS +  ++   A   A+      V     S     + + I  +L   
Sbjct: 278 AHMGIAQAHMAAFTSFDTFRDGIRAARLARESHQPIVHYDSGSLPVARETMQISAELLQG 337

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           VE  EL+LVY P +R  D+ + G EAL++W  P+ G +    F+ +AE+  +I  +  ++
Sbjct: 338 VERGELFLVYQPKLRFADDSVYGAEALLRWQSPRRGLVPPGRFIPMAEQSSLINVLTGWV 397

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L++    +  W          + IN++ +DLLD+ +   ++ + ++     +   L  +E
Sbjct: 398 LDQAGEAMRHWHADGRQ--FHLSINVSGRDLLDSRIMTQLRQMPNRVGVEATAFSLELTE 455

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           +  + N E     L  LR IG  + +DDFGT CS  +YL  +P   VK + S ++     
Sbjct: 456 TAFIENLETITSRLSELRDIGYDILVDDFGTGCSSFAYLHRLPVHGVKIDRSFISAIRTD 515

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           E    ++ S+I   + +    IA+ +        L  MGCD IQ   +A P+  + +L  
Sbjct: 516 ETAAHLVGSMIDWCRRMGKRTIAEGVEDHDTADLLKEMGCDAIQGYWLAKPMNGDDLLPW 575

Query: 953 LKER 956
           +  R
Sbjct: 576 MDRR 579


>gi|56751332|ref|YP_172033.1| hypothetical protein syc1323_c [Synechococcus elongatus PCC 6301]
 gi|81298999|ref|YP_399207.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
           7942]
 gi|56686291|dbj|BAD79513.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81167880|gb|ABB56220.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942]
          Length = 578

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 111/567 (19%), Positives = 222/567 (39%), Gaps = 26/567 (4%)

Query: 401 FSDGERQSLA-VLGSGDIVWDWD---IVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            SD  R  LA +  SG  V   D                 + G  +    G    +L   
Sbjct: 20  LSDRSRFWLAALEASGQGVAIADATHPDLILTYVNSAFKKLTGYNAAEALGKSCRFLQG- 78

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
             +      T L   +   +   +   R    D    W  + I P+++  G +  Y+ + 
Sbjct: 79  -SDRAQPGITTLRQAIRNGQAC-EVVLRNYRKDGSLFWNQLTIAPITDGQGKVSHYVALQ 136

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID---- 572
            DIT  K+  + +      D  +G+P RQ FLDRL   L  S     +   +++ID    
Sbjct: 137 RDITAFKEQEQALQRQGIYDEHSGLPKRQLFLDRLNQALAWSQ-FSGVPGALLLIDLGLP 195

Query: 573 --IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
             +D    ++        ++ L  +  R+   ++  + LA L+ ++FG++L+  +  L+ 
Sbjct: 196 AHLDGSPSLS-----PDAEENLEIIANRLQAYVRPHETLAHLNHHQFGLLLLDPDVQLRA 250

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            + A  ++  I   +          A IG    T     +  +      AM     + G+
Sbjct: 251 EERAHGIQTLIRDRLA----GFEGGAHIGIVPLTPETPATVLLQAAEAAAMTARSQQQGH 306

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                       ++     D   A+   EL L   P + L + ++ G E  ++W HP+ G
Sbjct: 307 LSLEASAIVAAPEQYSRDRDWQQAIAAGELTLALQPQMGLRNRQLRGFEVQLRWQHPQQG 366

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            + +S+ M   E+    + +  + L++  + +  WR+ A    +F  +++  +       
Sbjct: 367 TLLASQLMEHLEQSQHRETVGRWFLDQAGQLLSQWRNSAQFSGLF-ALSLLPQQWKSPSF 425

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +++L+      P +++L      +  +   S   +  +R +GI + L DFG++   L
Sbjct: 426 IHDLRSLLETYQIPPEQLELDLPAQSLAESAAESWDWVYAVRDLGIGIGLADFGSRSIGL 485

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
             L  +P  T+K     + G        AI+R ++ M++ ++  I+A+ +      K L 
Sbjct: 486 YDLRNLPLTTLKLERRFVRGLPDDANDRAIVRGVVAMSQALKVRIVARGVDTVDQAKFLA 545

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKE 955
           R  CD +Q    ++PL     L++ + 
Sbjct: 546 RAECDAMQGLAYSAPLTIEEALQVARS 572


>gi|300927147|ref|ZP_07142890.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|300416869|gb|EFK00180.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
          Length = 250

 Score =  281 bits (718), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 5/242 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  AVE  +L L Y PI+ L  E+IVG EAL++W HP  G +   +F+ + E   ++ 
Sbjct: 12  AQLAQAVERGQLELHYQPIVDLRSEQIVGAEALLRWRHPTLGLLPPGQFLPVIESSGLMP 71

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++L    R +  WR      P  + +N+++  +   +  + ++ +++      + +
Sbjct: 72  EIGAWVLGAACRQMRDWR-VLAWQPFRLAVNVSASQVG-PDFDKWVKGVLADAGLPAAYL 129

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ESV  G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S +
Sbjct: 130 EIELTESVAFGDPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPISTLKIDQSFV 188

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G     +   I+R++I +A  +   ++A+ +     +  L +  CD  Q    A P+  
Sbjct: 189 AGLANDHRDQTIVRTVIQLAHGLGMEVVAEGVETSASLDLLRQADCDTGQGFLFAKPMPA 248

Query: 947 NS 948
            +
Sbjct: 249 AA 250


>gi|254792876|ref|YP_003077713.1| modulator of Rnase II stability [Escherichia coli O157:H7 str.
           TW14359]
 gi|254592276|gb|ACT71637.1| modulator of Rnase II stability [Escherichia coli O157:H7 str.
           TW14359]
          Length = 525

 Score =  281 bits (718), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 184/434 (42%), Gaps = 15/434 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
               S G+    +     V  +   +   D   +            GL    + G   + 
Sbjct: 103 ARDLSHGLSFAEQ----VVSEAHSAIVILDSRGNIQRFNRLCEDYTGLNEHDVIGQ--SV 156

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
                           +          + E  +     Q  ++       S S  + +  
Sbjct: 157 FKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTRKGQRLFLFRNKFVHSGSGKNEIFL 216

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           I    DITE++++ E +   A  D++TG+PNR +  + +   ++ +   DN +  V+ +D
Sbjct: 217 ICSGTDITEERRAQERLRILANTDSITGLPNRNAMQELIDHAINQA---DNNKVGVVYLD 273

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIAD 632
           +D +KK+ND  G   GD +L  ++  I   L+   +LAR  G+ F ++L S  +   +  
Sbjct: 274 LDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEF-LVLASNTSQSALEA 332

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
            A  +   + +P  +   E+  + S+G A        S+ ++++A+ AMY AK  G    
Sbjct: 333 MASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSAAIIRHADTAMYTAKEGGRGQF 392

Query: 693 ESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
             F   ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G
Sbjct: 393 CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERG 451

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I   +F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +
Sbjct: 452 LIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTI 509

Query: 811 CEGMQALISKTLYS 824
              ++ ++ +  + 
Sbjct: 510 FTALKQVLQELNFE 523


>gi|170078765|ref|YP_001735403.1| sensory box protein [Synechococcus sp. PCC 7002]
 gi|169886434|gb|ACB00148.1| sensory box/GGDEF domain/EAL domain protein [Synechococcus sp. PCC
           7002]
          Length = 275

 Score =  281 bits (718), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 126/243 (51%), Gaps = 4/243 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           ++  L  A+   +L +VY P +      + G EAL++WDHP++G+IS + F+ IAEE  +
Sbjct: 12  LELALAQAIARHQLTVVYQPQVNPQTTMVTGFEALLRWDHPQFGSISPTVFIPIAEEAGL 71

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  +  ++L+R  + +  W  Q +     + +NI+   +      E +Q L+     +P 
Sbjct: 72  IHELGDWVLQRAIKQLKKWHQQ-SQQTFRMAVNISVHQVTAPHFFERLQDLLVSHQVAPQ 130

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            ++L  +ESV++ + +    +L  L+K+G+ + +DDFGT  +  +Y     +DT+K +  
Sbjct: 131 HLELEITESVLIEDFQNICAVLASLQKLGVKIAIDDFGTGYASFNYTRLFGWDTLKLDRC 190

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP- 943
            +      +   AI +++I M+ ++   ++A+ I    ++  L +  CD +Q  + + P 
Sbjct: 191 FIKNLHCNKVNSAITKNLINMSHDLGFKVVAEGIEHPEELAMLKQFCCDEVQGYYFSRPL 250

Query: 944 LGF 946
           +  
Sbjct: 251 MPA 253


>gi|218672484|ref|ZP_03522153.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 305

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 148/292 (50%), Gaps = 3/292 (1%)

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
           + Q   +  R   +  + G++   +G++ D+TE   S E I   AF D +T +PNR  F 
Sbjct: 15  NGQSILLETRKLAVLGAGGEVTGVLGVSRDVTELNASREKIRQMAFYDPVTSLPNRLLFN 74

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +RL  ++  ++     R  VM+IDID +K +ND +G  VGD +L  +  R+ + ++  D 
Sbjct: 75  ERLQKVVSDAS-SQRRRTGVMLIDIDHFKVVNDTMGHPVGDQLLCQVATRLKKSVRDLDT 133

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F I+L     +  +   A ++ +       L  +E+ V+ S+G A       
Sbjct: 134 VARLGGDEFAILLPEIQTTDDLDWVACSILERFKESFLLDGKEVYVSCSVGIAISPDDST 193

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHP 726
             ++++K A+ AMY AK  G N    +         +R+ ++ +L  A+E  EL L Y P
Sbjct: 194 DVNDLVKYADSAMYLAKRSGRNSFRFYSKDLTVGVEERMQLESELRRAIEREELELHYQP 253

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            + L    ++G EAL++W HP+ G I    F+ +AE+  +I  +  ++L   
Sbjct: 254 KVLLDSGVMIGSEALLRWPHPEMGMIPPVRFIPVAEDTGLIVELGRWVLREA 305


>gi|87118909|ref|ZP_01074808.1| GGDEF family protein [Marinomonas sp. MED121]
 gi|86166543|gb|EAQ67809.1| GGDEF family protein [Marinomonas sp. MED121]
          Length = 848

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 183/458 (39%), Gaps = 37/458 (8%)

Query: 515 IANDITEQKKSLEGILCNA-------FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           + ND+++++ +L  +  +          D  TG+ NR + L RL +       +++ +  
Sbjct: 392 VFNDLSQERDALIHLSKHTDSDSNDWLYDPQTGLMNRFALLSRLQSA-----EENDHKTH 446

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-----PDILARLSGNRFGIILI 622
           + +  I  ++ IN+  G  V DD+L  L+  +   +            R+S N   ++L 
Sbjct: 447 LTLFRIRNFRLINEQYGYDVADDLLAQLSLYLKNRMGDTFLSLDFSCYRVSANEVAVLLQ 506

Query: 623 SENNSLKIADFAIAM-RKSIAMPINLLER---EITVTASIGFASWTSSKITS----SEML 674
           ++    K+  F   +     + P     +   EI+++ S+G AS  SS          +L
Sbjct: 507 TDMPPRKVNKFMEKLSEDVESSPFFTTSQATDEISISLSVGLASIFSSTGNLLCKKEHLL 566

Query: 675 KNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD 732
             A  A   A         +  +     + D +     +  A++   ++    P      
Sbjct: 567 IKANEARRQAHETNHLTFWNGDLDLVDQQKDNLNWIVKIKQALDEGNIFPYIQPYFDAKT 626

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            + VG EALI+        I  + F+ + ++  +   + + +LE     +         P
Sbjct: 627 GKCVGGEALIRAKI-DNEIIGPASFLDLIKQTQLYPKLTIKVLET-CGQL-----LRRDP 679

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
              + +N++  D       + ++    +      R+ L  +ES  + + +    ++   R
Sbjct: 680 NSHLALNLSVMDFKHVSTLKALRQFFRENDVK-GRLILEITESESIHDYQWITSIVSEFR 738

Query: 853 KIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIE 910
           + G  L +DDFG+  S L  L  +  D +K +GS++       K   ++R I  +A ++ 
Sbjct: 739 EAGALLAIDDFGSGYSNLEKLIELQPDVLKLDGSIIRTIDVDPKLQILVRHINSLAHSLG 798

Query: 911 TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               A+ ++ +     L  MG DY+Q  H++ P+   +
Sbjct: 799 IKTQAEFVHNQAVQDILVDMGVDYLQGFHLSKPISIQA 836


>gi|291618992|ref|YP_003521734.1| YddU [Pantoea ananatis LMG 20103]
 gi|291154022|gb|ADD78606.1| YddU [Pantoea ananatis LMG 20103]
          Length = 602

 Score =  280 bits (717), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/449 (23%), Positives = 203/449 (45%), Gaps = 14/449 (3%)

Query: 513 IGIANDITEQKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-V 570
           I     ++    S      +A F D +T +PNRQ  +  +   L  +      R  ++  
Sbjct: 152 ITTLTLLSSLVMSFLEAWHSAGFIDPVTNLPNRQRLIRDM-HYLAAAGDTTLRRLVLIDC 210

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRI--GELLKFPDILARLSGNRFGIILISENNSL 628
           ID+ +  ++   +G+A  + +L  +   +         DIL  ++  RF ++  +++   
Sbjct: 211 IDMPRAYELARSMGMAPVESLLKDVATLLPLRLRPAPSDILYTVATGRFAVLTRADS--- 267

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +I+   +A + +           + ++   G   + S      E L+ A  A++ A  RG
Sbjct: 268 RISANWVACQMAGISADLGEGLSVGLSTHTGEVDFVSGIFPPHETLRQAVSALHEAIDRG 327

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             +   S    + R+    +  DL  A  ENS LYLVY P I L   + +GLEALI+W H
Sbjct: 328 LPSLRFSEATDNKRTQDFTLVNDLARALRENSGLYLVYQPKICLQSGKPIGLEALIRWRH 387

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +S + F+ +AE+  ++ ++  ++++ +   +   R+     PI   IN++ +D  
Sbjct: 388 PVHGELSPASFIPLAEQTEILTSLTTWVIDNVITRLKRLRNSCIQLPIT--INVSERDFS 445

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            +   + ++  + K     S + +   E+  +     +   L  L+  G  ++LDDFGT 
Sbjct: 446 IDGFADVLEERMLKAKLPTSLLGIECLETERIVESPSAMRGLEMLKLRGFGISLDDFGTG 505

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S +SYL  +P D +K + SL++  +       I R+II M K ++  ++A+ +     +
Sbjct: 506 YSNISYLRRMPLDVIKLDRSLISELSSDTASRIIARNIIAMLKELDYVVLAEGVECVDTV 565

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + LT  GCD  Q    + PL  + +   L
Sbjct: 566 EALTEYGCDQAQGFFYSRPLADSELDHWL 594


>gi|255323234|ref|ZP_05364369.1| mechanosensitive ion channel family protein [Campylobacter showae
           RM3277]
 gi|255299757|gb|EET79039.1| mechanosensitive ion channel family protein [Campylobacter showae
           RM3277]
          Length = 811

 Score =  280 bits (717), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 95/609 (15%), Positives = 217/609 (35%), Gaps = 40/609 (6%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
            + N +        LV ++  +    +    A    +  + +   R   AV  S + +  
Sbjct: 225 YIQNVLSNLRRTMALVFVLFGLASIFVYISYARARNNIRLLN---RFEQAVDNSFNAITF 281

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
            D+ R             G     +     N +   H +  + ++ +L +    +  R  
Sbjct: 282 TDLDRKVKYVNKIFEQNFGYKFEELKDQNINIIKS-HQHSNEFYQDMLKTIESDQIWRAD 340

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------EQKKSLEGILCNA 533
            E   R    +  +  +   P+ N +GD   Y+ I  D T       E +   + +   A
Sbjct: 341 -ELISRTKSGELIYEQVIFSPLFNESGDKDGYMSIKFDKTKEIAMTKELENKNKELKNEA 399

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D LTG+ +  +   R+                ++ I+I+ +            D ++ 
Sbjct: 400 LKDKLTGLGSYFALTQRMEQ---------GSGGMIIYININNFMDFRFFYKTKTVDAIIA 450

Query: 594 SLTRRIGELLKF---PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE- 649
           S    +   +        + R+  + F  I    +++ ++    I   K+  + I +   
Sbjct: 451 SFATTLQLCIDTYKIDANIYRVQFDEF-CIWYGGDDAERVVRKFIDYFKANNLYITVEGA 509

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRVSSFRSDRVM 706
           RE      I            +  L  A LA + AK  G     + E+  +        +
Sbjct: 510 REFIPNIKITIGVSLPQDTPQTNRLTQAMLAHHEAKQNGETVQFYTENSHIEQQYYHNQI 569

Query: 707 IKEDLCLAVENSELYLVYHPIIRLM--DEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +   +  A+ N  + +   PI  +      +   E L++            EF+ IA+++
Sbjct: 570 MSRTIENALYNDTVIVECQPIYDVSGETARVKYYEVLVRLIDENGKIRYPGEFLDIAKKI 629

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   I   ++E + R +  +            +N++S D+ +  + + ++  +      
Sbjct: 630 SLYNDITKKVIEHVFRLVEKF------TNTSFSMNLSSSDIANESIRDLIEKKLRVCS-R 682

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +     ES  + + +     + ++R     +++DDFG+  S    +  +  DT+K +
Sbjct: 683 PEHVYFEILESEGVDDYKIVNDFINKIRAYDCKISIDDFGSGYSNYYRILELDIDTIKID 742

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GS++      +    +L++II  A      ++A+ +  E  + E+ + G  Y Q   +  
Sbjct: 743 GSIIKKLPYDKNARYLLQTIIDFAGRQGYNVVAEFVSSEEILAEIKKFGIKYAQGFLLGK 802

Query: 943 PLGFNSILK 951
           P   ++I +
Sbjct: 803 PTSPSNIEE 811


>gi|91778092|ref|YP_553300.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
 gi|91690752|gb|ABE33950.1| diguanylate cyclase/phosphodiesterase [Burkholderia xenovorans
           LB400]
          Length = 790

 Score =  280 bits (717), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 187/485 (38%), Gaps = 38/485 (7%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + W+     P        + + G              +   A  D LTG+ NR+SF+ + 
Sbjct: 176 WMWIAAIGVPT-----SAVFHFGFYRFRRNHFLLESQLAQLAATDPLTGLQNRRSFVKQA 230

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              LD  A     R + + +DID +K +ND  G AVGD  L  +   + E     D ++R
Sbjct: 231 ERRLDTLA--PETRISAIFLDIDNFKSLNDRFGHAVGDHALYEVAHALMEEASADDSVSR 288

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G  F ++L   +        A  +R +IA       +   +TAS G A    S  +  
Sbjct: 289 IGGEEFALLL--CDGLTGALHLAERLRLAIAAIERPDGQ---LTASFGVAE-HRSGESIM 342

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--------LCLAVENSELYLV 723
            +L  A+ A+  AKH G N V + R     + ++++ +              E+  L   
Sbjct: 343 MLLDRADEALLRAKHSGRNRVCAERPLPRDALQLLVDDAAGEDGAAVRRHRWEDYYLTSH 402

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P+  L  ++ VG EAL++ +      +  +               +   L+R +  + 
Sbjct: 403 FQPLYSLSHQKQVGFEALLRGEQGDGTLVPPAVLFAPKPSS------DEGALDRASHAVH 456

Query: 784 SWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV--VMGN 840
               + ++P   ++ +NI     +     + +  L+      P R+ L   ES    + +
Sbjct: 457 LANARGSLPDGAWLFLNILPATFIAEGYADQLAKLVRAVGLEPERVILEILESHGGSVDD 516

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAIL 899
             R+  L    R+ G  + +DDFG   S L  L  I  D VK +G L+  ++      IL
Sbjct: 517 MSRAAAL---YREHGFLIAVDDFGAGQSNLDRLFRIRPDLVKLDGELIRATSHGTEQPIL 573

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP----LGFNSILKLLKE 955
             ++ +       ++ + +    ++        D+ Q   +  P        S+ + + +
Sbjct: 574 PKLVSLLHQAGMLVVVEGVETTEELILAVESNVDFAQGYLLGRPAAEIAPPESVHRRIDD 633

Query: 956 RFPLV 960
            F ++
Sbjct: 634 AFDVI 638


>gi|300917102|ref|ZP_07133792.1| PAS domain S-box [Escherichia coli MS 115-1]
 gi|300415621|gb|EFJ98931.1| PAS domain S-box [Escherichia coli MS 115-1]
          Length = 1105

 Score =  280 bits (717), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR +G  + L   G   
Sbjct: 957  ATLVNDLLEQLGNSPLPPRLLHLIIPAEAILDHAESV----QKLRLVGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|218695690|ref|YP_002403357.1| putative sensor protein [Escherichia coli 55989]
 gi|218352422|emb|CAU98196.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli 55989]
          Length = 1105

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMMAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQLAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      +  + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   + 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLVS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  V       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLVSGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|323486587|ref|ZP_08091908.1| hypothetical protein HMPREF9474_03659 [Clostridium symbiosum
           WAL-14163]
 gi|323399968|gb|EGA92345.1| hypothetical protein HMPREF9474_03659 [Clostridium symbiosum
           WAL-14163]
          Length = 1052

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 171/424 (40%), Gaps = 22/424 (5%)

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           Q F+++   IL    T       ++ +DI  ++ IN   G   GD +L ++         
Sbjct: 5   QLFIEKSEKIL---RTRPKGCCYLLYLDITDFQYINFCYGTEAGDRLLQAVNDY--TAGL 59

Query: 605 FPDILA-RLSGNRFGIILI---SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
              +L  RL  + F  IL       +   +     ++           ++++     + F
Sbjct: 60  PFVLLCERLYSDYFLCILSFPGETPDEKAVQAVEHSLNG-----FMAEQQKLYPACKLRF 114

Query: 661 AS--WTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           A     +     S  +++A LA   AK    G   + S  +      R  +++ +   V 
Sbjct: 115 ACGLCRTGTQELSHTIESANLARKEAKRLDTGSAVLYSEELVQKTVTRYELEQTMNQVVR 174

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
                    P + L +  I+G EAL +        I    F+ + E    +  ++L +  
Sbjct: 175 EQRFCFYLQPKVDLTNGRIIGAEALARRIEQDGTVIYPDSFLPVMESSGTVVELDLLICR 234

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
           ++   +     Q   P +   +N++   + + +    + A+  +   SP  ++   +E++
Sbjct: 235 QVCAFLSGRIRQGL-PVVRTSVNLSRLHIKNKDTASSLHAIAQEYQISPELLEFELTETI 293

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--- 893
           ++     ++ L+ +LR  G  +++DDFG+  + ++    + FD +K +G  ++   E   
Sbjct: 294 LLDELTGAKKLIDQLRTYGYRVSIDDFGSGYAGINIWQELNFDCLKLDGCFLSEDPELKK 353

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K  A++ +II +   +  +I+ + +        LTR+GC  +Q  + + P+  +    + 
Sbjct: 354 KNEALVPNIINIGHRLGISILCEGVETAGQCTYLTRLGCTTVQGFYFSHPIAPDVFYDIY 413

Query: 954 KERF 957
           +++ 
Sbjct: 414 RKQN 417



 Score =  177 bits (449), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 145/385 (37%), Gaps = 21/385 (5%)

Query: 317  SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
               +       +    G      L  A + I  W + +     K                
Sbjct: 679  IATVLSAPSGNWKLGTGDRIPFYLSRADLGINDWHVTVLYRADKAAARSNRITTASLYFT 738

Query: 377  LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG-SGDIVWDWDIVRDRVTTTPDIA 435
              +      +   +       Q  FS  E++ L +   S  +++D+D ++D +  TP+  
Sbjct: 739  AALFTAIILIYLIIFLYMKKIQKKFSMEEQRYLLLEQFSDTVLFDYDCLKDTIRFTPNAD 798

Query: 436  TILGLASGSMHGPIRNWLPYIHINDRDNFRT----ILDSFVGYRRGRLQYEFRVRAA-DN 490
             +       +         Y+H  D          I+ S +  +  + +   R+    ++
Sbjct: 799  RLF--KIHDLVQH-----NYLHGLDVKYIYAGDMEIIQSLLMGQSVQKEIRIRLLHPTED 851

Query: 491  QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
            ++ W + + R +   +  ++  +G   DI EQK   + ++  + +D LTG+ NR S   +
Sbjct: 852  RYFWCLAQFRYLFEHD-TLVSVVGKITDIDEQKLHEDYLIEISEKDGLTGLRNRASAEAK 910

Query: 551  LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
            +   +      +    T+++ID+D +K+IND  G   GD  L+ L   + +  +  DIL 
Sbjct: 911  IRESI-----QNGADGTLLMIDVDNFKQINDQFGHTAGDSALIFLADCLQKTFRSNDILG 965

Query: 611  RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            R  G+     +    +          +   I    +  +    ++ SIG A    + ++ 
Sbjct: 966  RAGGDELIAYMEGVCDRNIAQKKVELLMYYIRQ--STSQGLPFISVSIGIALCPDNGMSY 1023

Query: 671  SEMLKNAELAMYHAKHRGGNHVESF 695
             E+   A+ AMY AK+RG    + +
Sbjct: 1024 EELFTAADQAMYEAKNRGKMQAQFY 1048


>gi|160941455|ref|ZP_02088790.1| hypothetical protein CLOBOL_06346 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435601|gb|EDP13368.1| hypothetical protein CLOBOL_06346 [Clostridium bolteae ATCC
           BAA-613]
          Length = 661

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 190/460 (41%), Gaps = 21/460 (4%)

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG  +  + +   I+ Q +  E        D+LT I NR SF + L+  +          
Sbjct: 220 NGMFMAIVNMVIFISFQTRRSEV-------DSLTFIGNRNSFFEELSLRIASRQ-----Y 267

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             V+++ + ++  +N+      GD+ L ++ R + + +       R     F ++L    
Sbjct: 268 FQVVLVCLKQFSLVNEKFSYKKGDEFLYNIAREL-DHILPGAKAFRFGNVEFAVLLPYAT 326

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                      +++       L      + A      +   +  ++++++  E  +++AK
Sbjct: 327 EEESTGSL-KRIQERFEERWELGAVGSYIQAYFTDVMYRGQEWNATQIIEYLESGIHYAK 385

Query: 686 HR-GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
              GG      ++    + R  I + +  ++      + Y P+  L        EAL++ 
Sbjct: 386 KEPGGLRRFDIKLLEQLNRRKRILDIMETSIRQRRFKVWYQPVFNLKTNRFSSAEALLRL 445

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  +S SEF+ +AEE  +I  ++  +LE +   +   RD+ +     I IN++ + 
Sbjct: 446 RDYDGEPVSPSEFIPLAEETGLIDDLSWIVLEEVCTLLGQMRDKID----SISINLSMQQ 501

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
             D  LC  +   +++   +P ++K+  +E V++ + +  + ++  +   G    LDDFG
Sbjct: 502 FEDRSLCARIHECLNRCGLNPDQLKIEVTERVLLQDMDYMKRMMEEMTGEGFGFYLDDFG 561

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S +S    +PF+ +K + SL+            +RS++     +   I+A+ +  E 
Sbjct: 562 TGYSNISCALSLPFEYIKLDRSLLVRLPGDSKVQVFVRSMVETFHAMGQKIVAEGVEEEE 621

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            I+ L + G D +Q  +   P+  +     + + +   + 
Sbjct: 622 QIELLRQFGVDCVQGYYYGKPMPEDEFRAAVAKGWEEQRR 661


>gi|224373797|ref|YP_002608169.1| ggdef family protein [Nautilia profundicola AmH]
 gi|223589197|gb|ACM92933.1| ggdef family protein [Nautilia profundicola AmH]
          Length = 783

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 88/423 (20%), Positives = 177/423 (41%), Gaps = 45/423 (10%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F DNLT +PNR+  ++                  + +I+ID +K+IND  G+  GD ++ 
Sbjct: 398 FTDNLTNLPNREKLINDFKD------------KYIAIINIDDFKEINDFFGVNEGDKLIK 445

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREI 652
                +  +    D   +LS + + II   ++   K+   A  +   +      +   EI
Sbjct: 446 EFGEFLNSI----DKTYKLSADEYAII---DDKPAKLKHKATEIINKLKNKKFKIGNDEI 498

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---FRSDRVMIKE 709
            +  ++G            E L  A+ A+ +AK R    +   +         + +  K+
Sbjct: 499 KINITVGIG----------ETLAQADTALKYAKKRKKQIIVYNKNLPILKEFEENLKWKK 548

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+EN+ +      II    ++I   E L++  H +    +   F+ IA++    + 
Sbjct: 549 IINEAIENNNVIPYIQAIIDNKTKKIKKYECLMRIKH-EGKIFTPYYFLEIAKKTHQYET 607

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++E+  +            P    IN++ +DL + +  + +   I K      ++ 
Sbjct: 608 LQKIIIEKCFKKFSKL-------PYNFSINLSLRDLKNEQFIKYLIKKIEKYNV-AEKLT 659

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL-GYIPFDTVKFNGSLM 888
           +   E   M + ++   ++ +L K+G+ + +DDFG+  S   YL   +P +T+K +G+L+
Sbjct: 660 IELLEDEEMISDKKINEIIHQLSKMGVKIAIDDFGSGYSNFVYLIKNLPINTIKIDGTLV 719

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 EK   +L+ I+ +AK      IA+ +  E    EL  +  D  Q  H + P   
Sbjct: 720 KDIINDEKLKKLLKKIVEIAKEFNFETIAEFVENEELYIELLHLDVDASQGYHFSKPFDI 779

Query: 947 NSI 949
             +
Sbjct: 780 EEL 782


>gi|281179166|dbj|BAI55496.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 1105

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTIYEPQQVAAHSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +  L+  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIELLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|327395331|dbj|BAK12753.1| diguanylate cyclase/phosphodiesterase YddU [Pantoea ananatis
           AJ13355]
          Length = 593

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/449 (23%), Positives = 203/449 (45%), Gaps = 14/449 (3%)

Query: 513 IGIANDITEQKKSLEGILCNA-FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM-V 570
           I     ++    S      +A F D +T +PNRQ  +  +   L  +      R  ++  
Sbjct: 143 ITTLTLLSSLVMSFLEAWHSAGFIDPVTNLPNRQRLIRDM-HYLAAAGDTTLRRLVLIDC 201

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRI--GELLKFPDILARLSGNRFGIILISENNSL 628
           ID+ +  ++   +G+A  + +L  +   +         DIL  ++  RF ++  +++   
Sbjct: 202 IDMPRAYELARSMGMAPVESLLKDVATLLPLRLRPAPSDILYTVATGRFAVLTRADS--- 258

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +I+   +A + +           + ++   G   + S      E L+ A  A++ A  RG
Sbjct: 259 RISANWVACQMAGISADLGEGLSVGLSTHTGEVDFVSGIFPPHETLRQAVSALHEAIDRG 318

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             +   S    + R+    +  DL  A  ENS LYLVY P I L   + +GLEALI+W H
Sbjct: 319 LPSLRFSEATDNKRTQDFTLVNDLARALRENSGLYLVYQPKICLQSGKPIGLEALIRWRH 378

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
           P  G +S + F+ +AE+  ++ ++  ++++ +   +   R+     PI   IN++ +D  
Sbjct: 379 PVHGELSPASFIPLAEQTEILTSLTTWVIDNVITRLKRLRNSCIQLPIT--INVSERDFS 436

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
            +   + ++  + K     S + +   E+  +     +   L  L+  G  ++LDDFGT 
Sbjct: 437 IDGFADVLEERMLKAKLPTSLLGIECLETERIVESPSAMRGLEMLKLRGFGISLDDFGTG 496

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            S +SYL  +P D +K + SL++  +       I R+II M K ++  ++A+ +     +
Sbjct: 497 YSNISYLRRMPLDVIKLDRSLISELSSDTASRIIARNIIAMLKELDYVVLAEGVECVDTV 556

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLL 953
           + LT  GCD  Q    + PL  + +   L
Sbjct: 557 EALTEYGCDQAQGFFYSRPLADSELDHWL 585


>gi|254459222|ref|ZP_05072644.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207084115|gb|EDZ61405.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 572

 Score =  280 bits (716), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 179/441 (40%), Gaps = 45/441 (10%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           ++ K+    +    + DNLT + N    +  +           +   T+ +IDI+ ++K 
Sbjct: 155 SKVKERTLELEHRLYHDNLTNLGNHTYMMKNI---------GSSSNETIYLIDINGFQKF 205

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILIS--------ENNSLKI 630
           ND+ G+  G+ +L    + + +  K  +  L R+ G+ F +            E    K+
Sbjct: 206 NDIYGLKSGNVILKKFAQNLQDFNKENNYMLYRVYGDGFVLQKNKKSSIKNNFEAEKEKL 265

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-- 688
                +++  +      +E E+T+ AS+                  A++A+ HAK     
Sbjct: 266 LKHFESIKIYLEEIEEDIEIEVTIGASV----------NEERPFIKADMALKHAKKDNLS 315

Query: 689 -GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
              + E    S    + +  K+++  A++N  +  V+  I+ +    +V  E+L++    
Sbjct: 316 IALYTEEMDTSKRLINDLYWKKEIKSALKNDSILPVFQGIVDMSQN-VVKYESLMRLKQC 374

Query: 748 KWG---NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           K G    IS   F+  A        +   M+++    +           I   IN++ +D
Sbjct: 375 KDGEEKLISPFFFLDAAVNTRQYNKLTRIMVQKTFSFMQ-------DKDIDFSINLSFED 427

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L D+   E + A I K     +R+ L   ES  + + E    +L   R  G+ + +DDFG
Sbjct: 428 LSDSLRVEFLHAQIKKYGVE-NRLILEILESETVSDYELVMNVLKEFRDKGVRIAIDDFG 486

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEI 922
           +  S   ++  +  D +K +GSL     E      ++++I   +  ++  +IA+ +  + 
Sbjct: 487 SGYSNFEHILKLDPDFIKIDGSLTKNILEDNRTYTLIKAICEFSHKLDIKVIAEFVSTQE 546

Query: 923 DIKELTRMGCDYIQDSHVASP 943
               L  +G D  Q  H + P
Sbjct: 547 IFLALKELGIDEYQGFHFSIP 567


>gi|217329520|ref|ZP_03445599.1| PAS fold family protein [Escherichia coli O157:H7 str. TW14588]
 gi|261225083|ref|ZP_05939364.1| putative sensor protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257571|ref|ZP_05950104.1| putative sensor protein [Escherichia coli O157:H7 str. FRIK966]
 gi|12516270|gb|AAG57130.1|AE005433_2 partial putative sensor kinase [Escherichia coli O157:H7 str.
           EDL933]
 gi|217317288|gb|EEC25717.1| PAS fold family protein [Escherichia coli O157:H7 str. TW14588]
          Length = 935

 Score =  280 bits (716), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 372 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 431

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 432 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 490

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 491 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 549

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 550 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 609

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 610 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 669

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 670 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 729

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 730 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFLQQAAKAVASKG---ISIALPLSVAGLSS 786

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      +  + E       +LR  G  +     G   
Sbjct: 787 ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVFSQVGRDL 842

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 843 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 902

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 903 TLSGIGVDLIYGEVIADAQPLD 924



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 19  RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 78

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 79  MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 138

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 139 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 198

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 199 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 258

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 259 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 317

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 318 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 375

Query: 525 SLE 527
             E
Sbjct: 376 LNE 378



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 69/223 (30%), Gaps = 2/223 (0%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
           ++ + L     +    +++  ++       LI    ++ +  +              +  
Sbjct: 37  LSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMS 96

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            +     L+++L    +   + A     + I     R   A+  S   +         + 
Sbjct: 97  HMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQ 156

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
           +   +   LG +   + G    +       D +     ++  +         E R    +
Sbjct: 157 SNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRN 214

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 215 GDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 257


>gi|300921439|ref|ZP_07137797.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 115-1]
 gi|300411638|gb|EFJ94948.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 115-1]
          Length = 707

 Score =  280 bits (716), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 268 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 316

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 317 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 376

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 377 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 435

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 436 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 493

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 494 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 551

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 552 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 611

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 612 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 671

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 672 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 707


>gi|311696203|gb|ADP99076.1| diguanylate cyclase/phosphodiesterase [marine bacterium HP15]
          Length = 1253

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 186/437 (42%), Gaps = 19/437 (4%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +K  + +   +  D LTG+  R+ F   L   L     + +L       D+ +++ +ND 
Sbjct: 827  RKVYDQLSWASTHDELTGLLGRREFERMLDQQLARREDERSLVRL----DLRRFRLLNDT 882

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
             G   GD+ L  +   +   +     +ARL+GN F +++ SE+ S    D    +R   A
Sbjct: 883  AGYQAGDETLKRVADILRSHVGDGMPVARLAGNEFAMLVPSESASEAARDL---IRAVEA 939

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               +   R+  ++AS G      + +++   L+ +E A+  ++ +G   V  + + +   
Sbjct: 940  AEFSFGGRDYRLSASAGVVPTLPALVSAERWLRASEQALAASRQQGHGKVSEYALDADDQ 999

Query: 703  DRV-MIKEDLCLAVENSE----LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             R   I   +    + +E    L       +          E LI     +   I+  +F
Sbjct: 1000 ARQEQIAAKVASLSDLNEERMLLRCQKIIPLHAKSSMAAQYEVLISMYDDEGNLITGRDF 1059

Query: 758  MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF--ILINIASKDLLDNELCEGMQ 815
            + +AE    ++A++ +++  +   +   R+QA  P  F  + IN++   + D  L E + 
Sbjct: 1060 VRMAERYDRMQAVDRWVVGHMLDWL---REQAPDPRHFGGVCINLSGYSMNDQSLLEFIY 1116

Query: 816  ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              +S+      R+    +E+  + + +     +  ++++G    L +FG+  S   ++  
Sbjct: 1117 EKLSEKDAPIERLWFEITEASAINDVQSVADFIIEMKELGCRFCLGNFGSGPSSFEFMRS 1176

Query: 876  IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            +P D +K + +       +E   A++RS++ MA  +   +IA  +     +  L ++G D
Sbjct: 1177 LPVDLIKIDSAFTGQLSTSETDRAMVRSMVDMAHYMNREVIASQVESRDVLDMLRQLGVD 1236

Query: 934  YIQDSHVASPLGFNSIL 950
            Y Q   V  P   +S+ 
Sbjct: 1237 YAQGFVVEKPRLLDSLT 1253


>gi|324118153|gb|EGC12050.1| MASE1 protein [Escherichia coli E1167]
          Length = 747

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|257055667|ref|YP_003133499.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256585539|gb|ACU96672.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
           protein [Saccharomonospora viridis DSM 43017]
          Length = 621

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 224/565 (39%), Gaps = 26/565 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R       +   V   D         P    +L      + G     L     + +    
Sbjct: 59  RFIDLYAAAPIGVVLGDADGTIRDVNPAFVQLLEYTRSDLIGQPLTSLAATPSDAKALAA 118

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
            + +  +  RR R +    + A D      +         +G     + +  DI E    
Sbjct: 119 ALAEITLPGRRPRQERLTVIHAKDGTLRARVTVATVEGGPDGMP-HPVLMLEDINELDLL 177

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +     QD LTG+PN   F  +L  +L         R  ++ +DID ++ IND LG 
Sbjct: 178 GETLRRQNVQDPLTGLPNAYHFESKLDMMLA---GTTGERIALIYLDIDGFRVINDGLGP 234

Query: 586 AVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             GD+VL  + R++       D ++ARLSG+ F ++L  E ++  + D      + +A P
Sbjct: 235 GAGDEVLRQVARKLEAQFMPHDAVVARLSGDGFAVLLRGEFDNTNVVDLVEDTMRELAEP 294

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           + +  + I V  S+G     ++  T  E+ + AE+ ++ AK  G      F       DR
Sbjct: 295 VYVEGKGIGVNVSVGIVVTEAAGHTREELHRAAEITLHRAKENGKAQWMFFERELHDRDR 354

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLM-DEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
               I   +   +EN +  + Y P ++L    +I  + A+++W+HP +G +  ++F  +A
Sbjct: 355 RRYSIGAAIGGGLENGQFEVDYEPTVKLDGSNQIAVVNAVLRWNHPDYGLLRPADFSALA 414

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +   M  A+   +L +   D   W  +    P  + + + ++  +D  L   ++  + +T
Sbjct: 415 DVTGMTPALGQLVLTQSMADAAVWHQEFTNAP-DLCVRLPTRFAIDPNLVCIVRTELERT 473

Query: 822 LYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISL--TLDDFGTKCSLLSYL--GYI 876
              P+++++  ++S+ + +P       L  L ++ + +   +    +  + L  +    +
Sbjct: 474 GLPPNKLRI-CTDSIALTDPRGEVLETLSVLAELNVKITLAV----SGAADLELIHQHRL 528

Query: 877 PFDTVKFNGSLMTGSTEKRIA------ILRSIIPMAKNIET-TIIAKDIYGEIDIKELTR 929
           P   +  +GSL+    E   +       L  ++  A+ +    + A  ++     + L  
Sbjct: 529 PVGFLIVSGSLIDALAEDDDSGHSAHRHLSMLLSRARELGITRVGADGVHSTEHARRLAE 588

Query: 930 MGCDYIQDSHVASPLGFNSILKLLK 954
           +G    +       +G   +  +L 
Sbjct: 589 LGIIAGRGKLFGEEVGAAEVRSMLA 613


>gi|332533967|ref|ZP_08409819.1| putative GGDEF domain membrane associated protein, putative
           nucleotide cyclase/phosphodiesterase Box
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036603|gb|EGI73069.1| putative GGDEF domain membrane associated protein, putative
           nucleotide cyclase/phosphodiesterase Box
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 685

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/426 (20%), Positives = 187/426 (43%), Gaps = 14/426 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+   ++  +     L LS+         +++ +D Y++I++ LG  + D +L  
Sbjct: 265 HDELTGLLRLKALEEEF---LQLSSVRGCSNFATVIVKLDFYEEIHNSLGYEISDKILKK 321

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
            + RI   +    ++++   + F +          +     A+   ++    +   +  +
Sbjct: 322 ASERISINVDNRVLISKGINDSFVLYFTD-TTPAILKQKIEALILDLSKAYCIDTFDFNL 380

Query: 655 TASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDL 711
           TAS G   + T         L+ A +A+  +   GGN +  ++         +++I+ +L
Sbjct: 381 TASAGVVFYQTPESFNFKLNLQQANIALEKSTELGGNQIHFYQQLMDDKHSEKIIIRNNL 440

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++N+EL + Y PI  L   +IVG+EAL++W       IS ++F+ +AE    I  + 
Sbjct: 441 HSALKNNELEVFYQPIHNLNGNQIVGVEALVRWC-CNGEWISPAKFIPVAETTGQIVQVG 499

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +L ++  DI           I + +N ++K ++ +     +  L+++   +     + 
Sbjct: 500 KQVLNQVLHDIKKHSQL---QNITVAVNFSTKQIIKDNFSIDLLHLLTQNNITYKNFTVE 556

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES            L  L   G+++ +DDFGT  S LSYL   P + +K +     G+
Sbjct: 557 VTESSF-QEKTSIEKTLLELINSGLNVAIDDFGTGFSSLSYLANQPANIIKIDREFTLGA 615

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +      +L +II +  ++   ++ + +  E  I  L+R     IQ    + PL  + +
Sbjct: 616 DKDTKERKLLDTIIKVCYDLGKKVVVEGVEDEKLITHLSRYKDIRIQGYFFSKPLPVDQL 675

Query: 950 LKLLKE 955
           ++ ++ 
Sbjct: 676 IEYIRA 681


>gi|296158019|ref|ZP_06840852.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
 gi|295891787|gb|EFG71572.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. Ch1-1]
          Length = 777

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 186/485 (38%), Gaps = 38/485 (7%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + W++    P        + + G              +   A  D LTG+ NR+SF+   
Sbjct: 163 WMWVVAIGVPT-----SAVFHFGFYRFRRNHFLLESQLAQLAATDPLTGLQNRRSFVKHA 217

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              LD  A     R + + +DID +K +ND  G AVGD  L  +   + E     D ++R
Sbjct: 218 ERRLDTLA--PETRISAIFLDIDNFKSLNDRFGHAVGDHALYEVAHALMEEASADDSVSR 275

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G  F ++L   +        A  +R +IA       +   +TAS G A    S  +  
Sbjct: 276 IGGEEFALLL--CDGLTGALHLAERLRLAIAAIERPDGQ---LTASFGVAE-HRSGESIM 329

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--------KEDLCLAVENSELYLV 723
            +L  A+ A+  AKH G N V + R     + ++++                E+  L   
Sbjct: 330 MLLDRADEALLRAKHSGRNRVCAERPLPRDALQLLVDDGAGEGGAAVRRHRWEDYYLTSH 389

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P+  L  ++ VG EAL++ +      +  +               +   L+R +  + 
Sbjct: 390 FQPLYSLSHQKQVGFEALLRGEQGDGALVPPAVLFAPKPSS------DEGALDRASHAVH 443

Query: 784 SWRDQANMPP-IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV--VMGN 840
               + ++P   ++ +NI     +     + +  L+      P R+ L   ES    + +
Sbjct: 444 LANARGSLPDHAWLFLNILPATFIAEGYADQLAKLVRAVGLEPERVILEILESHGGSVDD 503

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RIAIL 899
             R+  L    R+ G  + +DDFG   S L  L  I  D VK +G L+  ++      IL
Sbjct: 504 MSRAAAL---YREHGFLIAVDDFGAGQSNLDRLLRIRPDLVKLDGELIRATSHGTEQPIL 560

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP----LGFNSILKLLKE 955
             ++ +       ++ + +    ++        D+ Q   +  P        S+ + + +
Sbjct: 561 PKLVSLLHQAGMLVVVEGVETTEELILAVESNVDFAQGYLLGRPAAEIAPPESVHQRIDD 620

Query: 956 RFPLV 960
            F ++
Sbjct: 621 AFDVI 625


>gi|256376413|ref|YP_003100073.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255920716|gb|ACU36227.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/540 (18%), Positives = 198/540 (36%), Gaps = 20/540 (3%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
            +    +   V         +     +A IL  A G++ G   + L  +H  DR      
Sbjct: 309 RIVEEAARIGVASVTFEGSVLEANDALADILNRAHGTLTGV--DLLELVHPADRGVVVAD 366

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L          L  + R+   D +  W  +   P+    G     + +  D T+      
Sbjct: 367 LAGLACGGTSALSGQRRLVRPDGEVAWAALTTAPLR-PPGREPYAVVVVEDRTDVSLLQG 425

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   +  D LT +PNRQ F  RL   L  +  D     TV  +D+D + +IN  LG AV
Sbjct: 426 QLNHQSLHDVLTWLPNRQYFTSRLERALRTA--DPATGVTVYHLDLDGFSRINGGLGRAV 483

Query: 588 GDDVLVSLTRRI-GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           GD VL +   R+   +     ++AR   + F +++ +   +  +      + + +  P+ 
Sbjct: 484 GDHVLKTAASRLFEAVPGENAMIARFGADEFAVLVENVAGTPDVVTTVRRINERLGEPLE 543

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDR 704
           +  +EI ++A+IG     +     +E+L+ A+LA+  A+  G                  
Sbjct: 544 VAGQEIALSATIGVVHRPAPGTPPAELLEAADLALRRARGLGSRQWALADPELDGVDRRD 603

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +   +  A    EL + Y P++RL D E+V  EA+++W HP  G +       +AEE 
Sbjct: 604 FTLAATMPGAWRRGELEVRYRPVVRLADAEVVAAEAVLRWRHPVLGVLPHGRCARLAEET 663

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
                +   +L         W       P+ +   ++ +   D +L       + +T   
Sbjct: 664 GFAVPLGALVLRAACERAAEWARDGAELPVRVA--LSGEQAADQDLVGSALRALEETGLP 721

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              ++++    V+    + +   L  L   G+   +DDF      L+ L   P   V+  
Sbjct: 722 RRLLRVAVPARVLFER-DEAADNLRVLADAGVGAEVDDFPVAPGELAALEAFPVRAVR-- 778

Query: 885 GSLMT-GSTEKRIAILRSIIPM---AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
              +  G      + ++++  +    +     +    +      +    +G +       
Sbjct: 779 ---VRAGLEVTHPSAVKALTELLGVLREAGVEVSVDGLTTAERSRWWREVGAETGAGPLF 835


>gi|218696130|ref|YP_002403797.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218352862|emb|CAU98661.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
          Length = 747

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|300309962|ref|YP_003774054.1| response regulator [Herbaspirillum seropedicae SmR1]
 gi|300072747|gb|ADJ62146.1| response regulator ( EAL domain) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 420

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 125/280 (44%), Gaps = 9/280 (3%)

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            A+   +  G  H                + DL  A+E  ++   + P + +    + G+
Sbjct: 128 AALESFRPHGTEHQPDHDPQPSMC-----EHDLGAAIEGGQVLPYFQPKVDVQTGILKGV 182

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W HP+ G +S   F+ +AE+  +I  + L M+++       W  +     I + +
Sbjct: 183 EALARWIHPERGMVSPDRFIPLAEQCGLIHPLTLAMMDQAMGQAAIWHSRG--LAIKVAV 240

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L   +    +  L+ K       + L  +ES V+ +   S  +L RLR  G  L
Sbjct: 241 NLSPLLLEKPDFLHRILELVDKHALPAEHVVLEITESSVVAHKGNSLGMLARLRLKGFGL 300

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
           ++DD+GT  S +  L  IPF  +K + S + G+ +++    IL+S + MA+ +E   +A+
Sbjct: 301 SIDDYGTGFSSMQQLARIPFTELKIDRSFVHGAHDRKNLRVILQSALDMAQRLELVTVAE 360

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +    D + L   GC   Q   +  P+  + +   LK  
Sbjct: 361 GVETMEDWRLLQDFGCSLGQGYLIGKPMPAHELPLWLKGH 400


>gi|293410898|ref|ZP_06654474.1| cytochrome C-type biogenesis protein [Escherichia coli B354]
 gi|291471366|gb|EFF13850.1| cytochrome C-type biogenesis protein [Escherichia coli B354]
          Length = 747

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|168761113|ref|ZP_02786120.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189368477|gb|EDU86893.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4501]
          Length = 799

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRTVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|323187789|gb|EFZ73087.1| hypothetical protein ECRN5871_3976 [Escherichia coli RN587/1]
          Length = 1105

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +   IIA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKIIAGPVGLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|324119096|gb|EGC12985.1| GGDEF domain-containing protein [Escherichia coli E1167]
          Length = 1105

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++  + 
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWNC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ +         +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAVSV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 88/293 (30%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                 + + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGEWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGEWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|114765428|ref|ZP_01444543.1| diguanylate cyclase, putative [Pelagibaca bermudensis HTCC2601]
 gi|114542271|gb|EAU45301.1| diguanylate cyclase, putative [Roseovarius sp. HTCC2601]
          Length = 515

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 179/412 (43%), Gaps = 11/412 (2%)

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
             ++  + T   L     +++ +    I    G  V  D+  +L +R+   L+  D +AR
Sbjct: 87  DHMIARA-TGAKLGTACFLVEAEGLDVIRRRAGDMVAQDLQETLLQRLRGQLRRGDRVAR 145

Query: 612 LSGNRFGIILIS--ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS--SK 667
           +  +RF ++L      +   +   A  M++++  P         ++ ++GF + +     
Sbjct: 146 IGDSRFLVLLSPSLRLDLEALLLMANRMQRALEEPAETEGGTHFLSVAVGFCASSRLRDH 205

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
              ++++  A  A+  A   G + V ++  S     R    + E++  A+   ++   + 
Sbjct: 206 AGGAQLIDAAATALTEALANGPSAVRAWSESMRVQRRARKTLLEEVERALAKGQIRPWFQ 265

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P +      I G+EAL +W HP+ G +   EF+   EE   +  ++  ML+     +  W
Sbjct: 266 PQLCTSTGAISGVEALARWLHPERGIVPPVEFLTALEEAGQLDRLSEVMLDHSLSALRRW 325

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE-RS 844
            +     P  + +N +  +L +  L   ++  + +     SR+ +   E+V+   PE   
Sbjct: 326 DETGLAIP-RVSVNFSDVELRNPRLVTRLKWELDRFGLPASRLGVEVLETVIADAPEGVV 384

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSI 902
              +  L ++G  + LDDFGT  + ++ L       +K + S +T     E++  +L ++
Sbjct: 385 ARNITALSQLGCQIDLDDFGTGHASITALRRFAVHRLKIDRSFVTRVDRDEEQRRMLAAV 444

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + +A  +    +A+ +    +   L ++GCD++Q   +A P+  + +    +
Sbjct: 445 LGLADRLGLETVAEGVESVAEHALLAQLGCDHVQGFGIARPMPADQLADWAR 496


>gi|188493076|ref|ZP_03000346.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           53638]
 gi|312973257|ref|ZP_07787429.1| EAL domain protein [Escherichia coli 1827-70]
 gi|188488275|gb|EDU63378.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           53638]
 gi|310331852|gb|EFP99087.1| EAL domain protein [Escherichia coli 1827-70]
          Length = 747

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|293415766|ref|ZP_06658409.1| inner membrane protein yfgF [Escherichia coli B185]
 gi|291433414|gb|EFF06393.1| inner membrane protein yfgF [Escherichia coli B185]
          Length = 747

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRTVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|300816694|ref|ZP_07096915.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300530924|gb|EFK51986.1| PAS domain S-box protein [Escherichia coli MS 107-1]
          Length = 1105

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++  + 
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWNC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ +         +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAVSV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 88.5 bits (218), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|149195505|ref|ZP_01872581.1| ggdef family protein [Caminibacter mediatlanticus TB-2]
 gi|149134353|gb|EDM22853.1| ggdef family protein [Caminibacter mediatlanticus TB-2]
          Length = 676

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 171/421 (40%), Gaps = 34/421 (8%)

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                D+LTG+ NR SF   +              P V++ +IDK+K IND  G  +GD 
Sbjct: 275 YLLEYDSLTGLKNRFSFKKDIKKY---------NSPIVVIFNIDKFKNINDYFGSNIGDK 325

Query: 591 VLVSLTRRIGELLKFPDI---LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           VL  +   I +  K   I   + R+  + F  I  + + +   +     + +       +
Sbjct: 326 VLKEVGLFIEKYFKNKKIKGGVYRVGADDFAFIFENVDINDIKSIVKDLIEQIEIKDFKI 385

Query: 648 LEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
            E    ++ S G +  +          L+NA++A+ + K    +    +     +   + 
Sbjct: 386 NETIFNISMSAGISKKFP--------YLENADIALKNIKKDIKDKFIVYDNKMNKDVFLN 437

Query: 707 IKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           IK+  ++  A++N ++   Y PI    +  I   E L +         S   ++ I +E 
Sbjct: 438 IKKSKEIKEAIDNYKIIPYYQPIFD-KEGNICKYEVLCRVKVKD-EIKSIYPYLEILKEN 495

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +   +   +++     +       +   + + IN++ +DLL+ E+   +          
Sbjct: 496 KLYHRVTQIIIKEAFNKL------YSNKNLELSINLSVEDLLNKEILNLINQCFLIKKDI 549

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
             R+     ES  + N       +  L++ G+   +DDFG+  S  + +  +  D +K +
Sbjct: 550 SKRVTFEILESE-IDNYNEVNTFIKVLKQKGVKFAIDDFGSGYSNFNRILNLDIDYLKID 608

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           GS++     ++    IL +II  +K  +   IA+ +  +    E+ +MG D  Q  ++A 
Sbjct: 609 GSIIKDILYSKNSKLILETIINFSKKADKVTIAEFVENKEIYDEVKKMGIDCFQGYYLAK 668

Query: 943 P 943
           P
Sbjct: 669 P 669


>gi|207724529|ref|YP_002254926.1| hypothetical protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
 gi|206589751|emb|CAQ36712.1| hypothetical protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
          Length = 217

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AEE  +I  +  ++L    +    W  +     + + +N++ +   D  L E +  ++ 
Sbjct: 1   MAEETGLIVPLGRWVLRTACQQAAQWLREGRAT-LRVAVNLSPRQTRDPALVENVLGILR 59

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T   P  ++L  +ESV+M + + +  LL  L   G++L++DDFGT  S L+YL   P  
Sbjct: 60  ETGLPPHLLELEITESVLMEDIDANIKLLEALHAAGVNLSIDDFGTGYSSLAYLQRFPIH 119

Query: 880 TVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +K +   +        AI  ++I MA N+   ++A+ +     +  L   GCD  Q   
Sbjct: 120 KLKIDRGFVQRMPGDGEAIAGAVIAMAHNLRMQVVAEGVEHAGQLAWLRAAGCDLGQGYL 179

Query: 940 VASPLGFNSILKLLKER 956
            + PL  + ++  L+ +
Sbjct: 180 FSRPLYADQLMSWLRRQ 196


>gi|323184438|gb|EFZ69813.1| EAL domain protein [Escherichia coli 1357]
          Length = 747

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ I    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAILA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|331684146|ref|ZP_08384742.1| inner membrane protein YfgF [Escherichia coli H299]
 gi|331079098|gb|EGI50300.1| inner membrane protein YfgF [Escherichia coli H299]
          Length = 747

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EVVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|320196336|gb|EFW70960.1| Putative cytochrome C-type biogenesis protein [Escherichia coli
           WV_060327]
          Length = 747

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I+     +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RISALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EVVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|300821827|ref|ZP_07101972.1| PAS domain S-box [Escherichia coli MS 119-7]
 gi|300525669|gb|EFK46738.1| PAS domain S-box [Escherichia coli MS 119-7]
          Length = 1105

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++  + 
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWNC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ +         +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAVSV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|74313029|ref|YP_311448.1| putative cytochrome C-type biogenesis protein [Shigella sonnei
           Ss046]
 gi|73856506|gb|AAZ89213.1| putative cytochrome C-type biogenesis protein [Shigella sonnei
           Ss046]
 gi|323169054|gb|EFZ54731.1| EAL domain protein [Shigella sonnei 53G]
          Length = 747

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYMDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIVPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|256022241|ref|ZP_05436106.1| putative sensor protein [Escherichia sp. 4_1_40B]
          Length = 1105

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +  + + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNNTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAATHSERAAISLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|297538705|ref|YP_003674474.1| diguanylate phosphodiesterase [Methylotenera sp. 301]
 gi|297258052|gb|ADI29897.1| diguanylate phosphodiesterase [Methylotenera sp. 301]
          Length = 601

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 185/461 (40%), Gaps = 32/461 (6%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD---------DNLRPTVM 569
           +T Q +  +        D  TG+PN+   L+ L   L     +         +     ++
Sbjct: 145 VTNQLELYKFSYVQ-NFDLDTGLPNQHLLLNLLNLSLSNIQQNDLSKPSIPAEQTHLGLI 203

Query: 570 VIDIDKYKKINDVLGIA-----VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           ++++      N   G A        +++++    I + L     L  +      I++   
Sbjct: 204 LVNL------NINYGEASQQNSATTNLMLAAMHTIQQHLNDDATLFHVGAIDLAILINPL 257

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +  ++   A  +  +    + L    + +    G  S  + +  +    + A+LA+  A
Sbjct: 258 KSPTQLNLIATKLLHAFETALPLENITLILNPHFGAISTFNIQTNAISFYEYAKLALNQA 317

Query: 685 K-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-------EIV 736
                   +    +SS      ++ + +  A++ +EL L   PI+ + D+          
Sbjct: 318 TIKNEQIKIYDQNISSSFMSSQLLDKAIIEALQQNELSLFLQPIVTINDQSLLDEVSRCT 377

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E L++W   +W +IS +  + +  +    K    +++    +             + +
Sbjct: 378 SAEVLLRWQSQEWLSISPARLLDVIYKKGFGKVFIRWLINNACQRCAEL-ASTYQHNVSL 436

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            IN++S DLLD++L E +   I         + +  +E+ ++ +  +   +L ++ ++G 
Sbjct: 437 TINLSSVDLLDSDLPELLSQSIVLWNIPAESLTIEITENDILVDEVKVSRVLDQIIQLGC 496

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTII 914
            L LDDFGT  S ++ L  +P + VK + S +   +   +  AI++SII +A ++   +I
Sbjct: 497 KLALDDFGTGYSSMARLRNMPINIVKIDQSFVRNISSSTQDRAIVKSIIKLAHSLGKEVI 556

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           A+ +     +  L  M C+ IQ  +   P+ F   +  L  
Sbjct: 557 AEGVEDLACLNILKEMNCEKIQGYYYGKPMSFEEFITWLDA 597


>gi|309702781|emb|CBJ02112.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|323936395|gb|EGB32685.1| MASE1 protein [Escherichia coli E1520]
          Length = 747

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|309792947|ref|ZP_07687375.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|308123233|gb|EFO60495.1| PAS domain S-box [Escherichia coli MS 145-7]
          Length = 1105

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++  + 
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWNC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ +         +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAVSV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 109/363 (30%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D +   +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKD-RIRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548


>gi|88798855|ref|ZP_01114437.1| hypothetical protein MED297_12392 [Reinekea sp. MED297]
 gi|88778335|gb|EAR09528.1| hypothetical protein MED297_12392 [Reinekea sp. MED297]
          Length = 694

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/570 (14%), Positives = 202/570 (35%), Gaps = 20/570 (3%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               ++           +    +R  L +  S D +  +      +   P    + G   
Sbjct: 124 EVASLRSRRELRTQRIALKETEKRCQLLLESSVDAI-AYVHEGMHIYANPIYMDMFGYDD 182

Query: 443 -GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       +  +   +  + +  L  F   + G  +   + +  D +   + +    
Sbjct: 183 IEELQCTPI--MDLVSGEEVSHLKDALKGFKEGKSG--ELTTKGQTTDGETFGIHMDFSS 238

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            S       + I   ND+ E     E I   + QD +TG+ N+  F ++L         +
Sbjct: 239 ASYEGEPCTQIIIRKNDVNEAV-LQEKIREISSQDLVTGLHNKLYFNEQLDKAYQRV-IN 296

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           D+ R  V+ + +  + ++   +G+A  D +L  L  ++        ILAR + + F ++L
Sbjct: 297 DSTRMLVLHLGLTNFNEVKSAVGVAGSDVILKDLAEQLQIHQPDNSILARYADDMFALLL 356

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            S +           ++       ++    + V  + G A    +    +E L  A+ A 
Sbjct: 357 PSSDLEAAKKVINHTIQSVQEHLFDVDGTTVPVKLACGIAHIDEACKNGNEALVQADQAF 416

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             A   G       +          +   +  A+ +  L + + PI+ L  +     + L
Sbjct: 417 SQALQSGERLAYFDKSDIANLADNSLLAKVDHALMHDGLRVQFQPIMSLRGDSQEHYDIL 476

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++       +I + +F+   E   +   ++ +++++    +   R + +   + I   + 
Sbjct: 477 VRLIDKDGSDILADDFIPAIENSELSGKLDRWVVQQCIEALAEHRRRGHNTQLLIH--LT 534

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  + D      + +L+         I    +E +   + + ++     L  +   L+++
Sbjct: 535 AASIQDPTFLPWVNSLLKAEKLPGDSICFQITEQIAHSHLKAAKAFSKGLSLLKCQLSIN 594

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI------AILRSIIPMAKNIETTIIA 915
            FG   + L+   ++  +  + +GS +    +         A+L++I       +   I 
Sbjct: 595 QFGVGDNGLALTRHLDINYARIDGSFVEQLVKDGQASDELTALLKAI----HQNDINSIV 650

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             I     +  L  +G +YIQ  ++ +PL 
Sbjct: 651 PKIEHAEVLASLWELGVNYIQGYYLQAPLD 680


>gi|322507878|gb|ADX03332.1| EAL domain-containing protein [Acinetobacter baumannii 1656-2]
 gi|323517474|gb|ADX91855.1| hypothetical protein ABTW07_1426 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 343

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 121/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 73  CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 131

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L +  + +  W  +     + + INI++   + +  
Sbjct: 132 YIPTKEFIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 191

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 192 EHTVIGLVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 251

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 252 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 311

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 312 SNGCTEFQGYLWGCPMSLNEFIKQL 336


>gi|320641366|gb|EFX10821.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. G5101]
          Length = 935

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 372 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 431

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 432 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 490

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 491 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 549

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 550 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 609

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 610 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 669

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 670 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 729

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 730 EGEIIDEQTFRRSFSDPALSHALDRRVFHEFLQQAAKAVASKG---ISIALPLSVAGLSS 786

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      +  + E       +LR  G  +     G   
Sbjct: 787 ATLVNNLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVFSQVGRDL 842

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 843 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 902

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 903 TLSGIGVDLIYGEVIADAQPLD 924



 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 19  RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 78

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 79  MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 138

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 139 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 198

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 199 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 258

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 259 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 317

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 318 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 375

Query: 525 SLE 527
             E
Sbjct: 376 LNE 378



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 69/223 (30%), Gaps = 2/223 (0%)

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQP 369
           ++ + L     +    +++  ++       LI    ++ +  +              +  
Sbjct: 37  LSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMS 96

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
            +     L+++L    +   + A     + I     R   A+  S   +         + 
Sbjct: 97  HMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQ 156

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
           +   +   LG +   + G    +       D +     ++  +         E R    +
Sbjct: 157 SNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRN 214

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
               W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 215 GDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 257


>gi|184157568|ref|YP_001845907.1| EAL domain-containing protein [Acinetobacter baumannii ACICU]
 gi|183209162|gb|ACC56560.1| EAL domain protein [Acinetobacter baumannii ACICU]
          Length = 362

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 121/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 92  CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 150

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L +  + +  W  +     + + INI++   + +  
Sbjct: 151 YIPTKEFIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 210

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 211 EHTVIGLVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 270

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 271 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 330

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 331 SNGCTEFQGYLWGCPMSLNEFIKQL 355


>gi|324011216|gb|EGB80435.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 60-1]
          Length = 747

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|317055922|ref|YP_004104389.1| diguanylate phosphodiesterase [Ruminococcus albus 7]
 gi|315448191|gb|ADU21755.1| diguanylate phosphodiesterase [Ruminococcus albus 7]
          Length = 647

 Score =  279 bits (714), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 169/424 (39%), Gaps = 15/424 (3%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           GI NR++    + T L           +++ I I   + I    G    + +   +   +
Sbjct: 232 GIYNRRAVTADMHTYLV-----SGKNLSLLCIKITNTEIIKRATGSDNSEALSRLVAEYL 286

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             L+     +   +   F I ++   +  K+   A  + +    P  + + EI +   I 
Sbjct: 287 RSLV-PRYYIYSTNPGTFMITVMG-TDEQKVEWLAKTISERFEQPWRIGDNEIPLKVLIM 344

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
            A       + S+ L  A+  + +   +             R     ++  +   +E   
Sbjct: 345 SADVPKRIRSVSDALYMADSPVPNKLDKNILTGSDLDYLLRR---AAVESAIARGLEQHN 401

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
             + Y P   + D  + G EALI+   P+ GN+   EF+ IAE++ +I  ++ ++   + 
Sbjct: 402 FEVFYQPTFYVEDNRLYGAEALIRLHDPEMGNLFPDEFIPIAEQIGLIDEVDEYVFREVC 461

Query: 780 RDIIS-WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
             I S + ++  M    I +N++    +     E +  +          I    +ES+  
Sbjct: 462 SFINSGFPEENGME--CINVNLSVLQCMQPSFAEHIIEIAESFGIDKKMINFEITESIAA 519

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--I 896
            +      ++  L++ G   ++DD+GT  S +  +  + FD VK + S++  + + +   
Sbjct: 520 SDYSILSRVVRILKRQGFRFSMDDYGTGYSNMQSIFRLDFDVVKIDKSILWSAEKGQMGQ 579

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            IL S + M + +   I+ + +  E  ++ L  +  DY Q    + P+  + ++ L+ ER
Sbjct: 580 IILESSVRMIRQMRRKILVEGVETEHQLQMLRDLEVDYAQGYLYSKPISKSDLITLITER 639

Query: 957 FPLV 960
             + 
Sbjct: 640 NNVA 643


>gi|127511240|ref|YP_001092437.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
 gi|126636535|gb|ABO22178.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Shewanella
           loihica PV-4]
          Length = 882

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/437 (25%), Positives = 209/437 (47%), Gaps = 5/437 (1%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I +++K  + ++ +A  D LTG+PNR  F++RL   +         R  ++ ID+D++K 
Sbjct: 436 IAQRRKVEQQLVHDASHDTLTGLPNRAMFMERLAQAVKHVRRHARDRFALLFIDLDRFKL 495

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IND LG   GD  L+   RR+   ++  D L R+ G+ F I+L S N +    + A  + 
Sbjct: 496 INDTLGHLQGDRFLIETARRLNLCIRSNDTLGRIGGDEFVILLDSINTNSDAIEVAERIL 555

Query: 639 KSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
             ++ P  L  +  T  ASIG A    SS  TS  +LK+A+ AMY AK  G      F  
Sbjct: 556 GELSEPYQLSNQSFTSGASIGIAFSGHSSGDTSESLLKDADAAMYQAKSNGKGCFVIFDH 615

Query: 698 S--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
           +    +S  + ++ +L  A+   EL L Y P++ L  +E++ LE  + W H + G I   
Sbjct: 616 NTSHQQSHDITLEIELREAIAKQELALQYFPVLALATQEVLALEPRLYWQHEQLGKIKQD 675

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +   IAE   + K ++L++ +++  D      Q     + + I +AS+ L        ++
Sbjct: 676 QLSNIAEHCNLTKELDLYLFDQLNSDYDKVMQQV-DGQVQLHIKLASQHLKHKHAVRKLK 734

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I ++ Y    I + F+E   + + +        L K  I+L L  +G+  + LS L +
Sbjct: 735 NRIKQSYYKADDIWVFFNEKAFVADSDSHIQAFDLLAKQAINLGLCAYGSAHTALSSLSF 794

Query: 876 IPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           +P   +K + S ++     ++  +L++    A  +E T+  + +  ++  ++L  +G D 
Sbjct: 795 LPLSGLKLDPSYISHLNNPQQKRLLKAHQLTASALELTLFVEGVKTDLHRQQLVSLGFDQ 854

Query: 935 IQDSHVASPLGFNSILK 951
            Q   +   +  + + +
Sbjct: 855 GQGQALGESIDPSKLPE 871


>gi|295094683|emb|CBK83774.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain [Coprococcus sp.
            ART55/1]
          Length = 1178

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 180/437 (41%), Gaps = 28/437 (6%)

Query: 522  QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            Q+   E        D  T   NR S++D +          +     ++ +DI++ + I +
Sbjct: 759  QRHLKEDQQFEFTHDKQTKCFNRNSYIDYIR------GRKNLSSIGLVAVDINEIRGIAE 812

Query: 582  VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            + G    DDV++ L  RI +     + + R+  + F II  +          +      +
Sbjct: 813  MFGPDYADDVILQLVGRIRKTF-PDERVFRMGYDSFIIICENIEQLKFNVYASRLRENLL 871

Query: 642  AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
                           +     WT   I    M  +A   +Y  K R     +   V    
Sbjct: 872  YGEFT----------ACCGYVWTDYNIDVRRMEDHAANLLYSEKQRWYEQQDCHSVKWNT 921

Query: 702  SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              + M+K++L    E    Y++Y P +     +I G EAL+++          ++ +   
Sbjct: 922  LKKDMVKKEL----EEGLFYVLYQPKMLYPSGKICGAEALVRYSGNDD----LADVIDRL 973

Query: 762  EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            E+   +K ++ ++LE + RD+  W ++  MP I +  N +   L+++ + + + A++ + 
Sbjct: 974  EKSRTVKYVDFYVLENVCRDLAKWHEE-GMPYIPVSCNFSRMSLIESNVAKQIAAVVDRY 1032

Query: 822  LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                  +++  +ESV     +    +   + ++G  + +DDFGTK S ++ L ++ FD +
Sbjct: 1033 GIPHDVVEIEITESVSEQEHDTLVNISNNIHELGFRIAMDDFGTKYSNVAMLAHMGFDII 1092

Query: 882  KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            KF+ S++           ++  +I M   +    IA+ +  E     L+ MG   IQ   
Sbjct: 1093 KFDKSMINDVTVNPVDRTVMCHLINMCNELGMFCIAEGVETEDQADALSSMGLACIQGYL 1152

Query: 940  VASPLGFNSILKLLKER 956
             + PL     +++ +ER
Sbjct: 1153 CSRPLEKEKYVEMCRER 1169



 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 127/347 (36%), Gaps = 26/347 (7%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
           L    +   I+    V   V +         +  E   L + GSG+ +  +D+  D +  
Sbjct: 134 LSVMSIKKGIIALCAVFIDVTSKMEAELENKAQSEMLRLILQGSGESIIVYDVPTDTL-I 192

Query: 431 TPDIATILGLASGSMHGPIR--------NWLPYIHINDRDNFRTILDSFVGYRRG---RL 479
              +        G M   ++        +    +H +DRD    +    +        RL
Sbjct: 193 NKKVVD------GEMVTTMKYENFYKGIDTNRIVHADDRDAVTGMFRKILDADADSCDRL 246

Query: 480 QYEFRV-RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             + R+      +  W  +   P+ +S   + +  G    I ++K   + +   A +D+L
Sbjct: 247 MGDLRLDLNGGGKCEWYRVLFVPLRDSKKKVCKIFGKYYSINDEKIRSQELQLRAERDSL 306

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N  +F  ++T +L+   +         ++DID +K IND  G   GDD+L  +   
Sbjct: 307 TGLYNHVTFQHKVTDMLE---SFPGELCAFYIMDIDDFKHINDAFGHYAGDDLLCDVAVT 363

Query: 599 IGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           + E+         RL G+ F + +   +    +   A  ++  +      L   ++V  S
Sbjct: 364 LEEVASAAGGFSGRLGGDEFALFIPIVDRREDVYKLADDIQSRLTTINCSLPHTMSVGIS 423

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
           +         I    +   ++ A+Y AK  G N    +  S+     
Sbjct: 424 VHRI---EDGIEFDLLYSESDQALYAAKRGGKNRYCDYADSADMHSC 467



 Score = 48.4 bits (114), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVL--GSGDIVWDWDIVRDRV-TTTPDIATILGLASGS 444
           + +      S+ I          +     G  +++    +  V   +     +  +    
Sbjct: 20  EALGRNEELSEEISDHARMLEKTLDNLAGGVGIFELHGNKPAVRYMSKSFYKLFNVTEDQ 79

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD-NQFHWMIIRIRPMS 503
           M G   +++      DR   +  +   +   +  +  + R    +   + W+ + +  MS
Sbjct: 80  MSGYASDYVMLAIPEDRSVLKKQILETITSNKTTVH-DIRFTDVNTGGYLWIQVCLSVMS 138

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNA 533
              G I+    +  D+T + ++       +
Sbjct: 139 IKKG-IIALCAVFIDVTSKMEAELENKAQS 167


>gi|293410431|ref|ZP_06654007.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470899|gb|EFF13383.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 1105

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTIYEPQQATAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRRFSDPALSHALDRRVFHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAENV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|90023450|ref|YP_529277.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
 gi|89953050|gb|ABD83065.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Saccharophagus degradans
           2-40]
          Length = 763

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 190/435 (43%), Gaps = 19/435 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E    +E +   A+ D +  IPN  +   ++  +     +  N   +++ + I++ +   
Sbjct: 333 ENLALIERLDELAYIDPILKIPNTNALSQQIENL-----STTNQALSLITVHINQIEHAI 387

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            V G  + +  LV L  +    L          G     +L+   +     +++  ++  
Sbjct: 388 VVFGHTIVNQALVDLREKFITELTPSPFCVASDGKEDLFLLVPSTH-----NYSQTIKNI 442

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV---ESFRV 697
           +   I +    ++ +A I  A      + S  +++N+  A+  A  + G +       ++
Sbjct: 443 LDQKICVDGITLSFSAIISIADVEED-MDSQTVVRNSISALILAATQSGTNNVVKYDAKI 501

Query: 698 SSFRSDRVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +S  + R++++  L  A+E N  +     P +   D ++VG EAL +W+      I+  E
Sbjct: 502 NSALNKRILMQSSLREALEFNGGVQAYLQPKVNCADGKLVGAEALCRWEL-NGNAIAPDE 560

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE   +   +   ML +   +    R   N+P + + +N++  +L      + M  
Sbjct: 561 FVPIAEAGGLSSKLTDAMLIQ-IANFAESRRAKNLPVLPVAVNLSMNELHIPNFADSMHN 619

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +     SP+ I+   +E+V+M +P+++   L RLR++G  L +DDFGT  S L+YL  +
Sbjct: 620 HLLSLGLSPNTIEFEITENVMMLDPDKTIYELSRLRELGYYLAIDDFGTGYSSLNYLHRL 679

Query: 877 PFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +        + ++  + I +A+ +  T+IA+ I  +     L  +GC+ 
Sbjct: 680 PVHCLKIDKMFINQLDINSAKSSLAATSISIAEKLGLTVIAEGIETQEQHDALKFLGCNI 739

Query: 935 IQDSHVASPLGFNSI 949
            Q      P+   + 
Sbjct: 740 CQGYLFGKPIAAENF 754


>gi|306814431|ref|ZP_07448593.1| hypothetical protein ECNC101_20357 [Escherichia coli NC101]
 gi|305851825|gb|EFM52277.1| hypothetical protein ECNC101_20357 [Escherichia coli NC101]
          Length = 747

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQRALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|291523094|emb|CBK81387.1| diguanylate cyclase (GGDEF) domain [Coprococcus catus GD/7]
          Length = 647

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 161/413 (38%), Gaps = 8/413 (1%)

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           S  ++++TIL  S  +       ++ D+D +  IND  G   G  +L  L +++ EL   
Sbjct: 239 SLKEKISTILTNSCRNKQ--YAFLMTDVDNFHLINDYWGYETGTAILNFLFKKM-ELFPQ 295

Query: 606 PDILARLSGNRFGIILISE-NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              + R   + F  I+     N     +  I   K  +  I        +  + G     
Sbjct: 296 TVFVNRYHSDVFACIVDITGQNQQSFREKVIRYNKQTSSEILEAYPVNYLFLNTGIYYLE 355

Query: 665 SSKITSSEMLKNAELAMYHAK-HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
            ++I+S E++ +  +    AK    G    S  ++     R         A+E  E  L 
Sbjct: 356 GTEISSEELISHTNIVRRKAKTELSGVCEYSEDIARDEQKRAETIHTFRNALEQKEFQLY 415

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           + P I    ++I   E L++W            F+ I EE   ++A++ ++ E     + 
Sbjct: 416 FQPKINGKSQQISSAEVLVRWQKNDGSLWFPDSFLPILEETGEVEALDYYVYEAAFLWLS 475

Query: 784 SWRDQANMPPIFILINIASKDLLD-NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             R +     I + +N++       N     +  LI K       +    +E+  + N +
Sbjct: 476 E-RMKKQQKIIPLSLNVSPIHFRKINTFIHKVSDLIDKYKIPSQYLIFEITETTYIHNID 534

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRS 901
               ++   +K  I +++DDFG+  S L+ L  I FD VK +   +    +EK   +L+ 
Sbjct: 535 AVNQMIRFFQKKNIRISMDDFGSGYSSLNTLKDILFDEVKIDKRFLDDDLSEKGKIVLQE 594

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I  + K     I+ + +  +  +  L +  CD +Q  +   PL       L+ 
Sbjct: 595 IFHLLKRTNKLIVCEGVETKEMVDFLVQENCDELQGYYYYKPLEMQKFEALIA 647



 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 2/138 (1%)

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
             +L L   DD L   VM+ D++  KKIND  G   GD  + +    +  +L     LAR
Sbjct: 81  KELLKLQNADDTLNIGVMMFDLNNLKKINDTYGHEEGDLFIQTFASYLTRILTENSFLAR 140

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
             G+ F  I+  E +  ++    + ++  +          I+        S  +      
Sbjct: 141 FGGDEFV-IIQRETSWSELEQMNMRLQSLLDAYNQTAIHPISYAVG-YDISCKNHYYLIM 198

Query: 672 EMLKNAELAMYHAKHRGG 689
           ++LK A+  MY  KH   
Sbjct: 199 DLLKMADQKMYQDKHYKK 216


>gi|26248863|ref|NP_754903.1| hypothetical protein c3021 [Escherichia coli CFT073]
 gi|91211824|ref|YP_541810.1| hypothetical protein UTI89_C2819 [Escherichia coli UTI89]
 gi|218690618|ref|YP_002398830.1| hypothetical protein ECED1_2927 [Escherichia coli ED1a]
 gi|227887533|ref|ZP_04005338.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli 83972]
 gi|237705009|ref|ZP_04535490.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300981940|ref|ZP_07175808.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 45-1]
 gi|301046381|ref|ZP_07193541.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 185-1]
 gi|331658642|ref|ZP_08359586.1| inner membrane protein YfgF [Escherichia coli TA206]
 gi|26109269|gb|AAN81471.1|AE016764_153 Hypothetical protein yfgF [Escherichia coli CFT073]
 gi|91073398|gb|ABE08279.1| hypothetical protein YfgF [Escherichia coli UTI89]
 gi|218428182|emb|CAR08956.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|222034211|emb|CAP76952.1| Inner membrane protein yfgF [Escherichia coli LF82]
 gi|226901375|gb|EEH87634.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227835883|gb|EEJ46349.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli 83972]
 gi|294489616|gb|ADE88372.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli IHE3034]
 gi|300301607|gb|EFJ57992.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 185-1]
 gi|300408886|gb|EFJ92424.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 45-1]
 gi|307554523|gb|ADN47298.1| predicted inner membrane protein with EAL domain [Escherichia coli
           ABU 83972]
 gi|307625945|gb|ADN70249.1| hypothetical protein UM146_04210 [Escherichia coli UM146]
 gi|312947076|gb|ADR27903.1| hypothetical protein NRG857_12435 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288079|gb|EFU47479.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 110-3]
 gi|315292433|gb|EFU51785.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 153-1]
 gi|323949476|gb|EGB45364.1| MASE1 protein [Escherichia coli H252]
 gi|323955740|gb|EGB51498.1| MASE1 protein [Escherichia coli H263]
 gi|324008530|gb|EGB77749.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 57-2]
 gi|331054307|gb|EGI26334.1| inner membrane protein YfgF [Escherichia coli TA206]
          Length = 747

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQRALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|301647996|ref|ZP_07247769.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
 gi|301073897|gb|EFK88703.1| diguanylate cyclase domain protein [Escherichia coli MS 146-1]
          Length = 730

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 167 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 226

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 227 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 285

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 286 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 344

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 345 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 404

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 405 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 464

Query: 692 VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 465 VTVYEPQQAAAHSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 524

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 525 EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAA---KAVTSKGLSIALPLSVAGLSS 581

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 582 TTLVNELLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 637

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 638 QIFNSLKVNMADYLLLDGELCANVQGNLMDEMLITIIQGHAQLLGMKTIAGPVVLPLVMD 697

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A     +
Sbjct: 698 TLSGIGVDLIYGDVIADAQPLD 719



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q      ER +L     G  +W+W++  +  +    +  +  +
Sbjct: 30  LYFIAQIEDINELKRTEQVNQQLMERITLTNEAGGIGIWEWELKPNIFSWDKRMFELYEI 89

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 90  PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALAN 146

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 147 RVLNKEGEVERLLGINMDMTEVKQLNE 173



 Score = 41.1 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            E R    +    W ++ +  + +++G  L +I    DI E K++ +       +  LT
Sbjct: 1   MEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLT 59


>gi|110642665|ref|YP_670395.1| hypothetical protein ECP_2505 [Escherichia coli 536]
 gi|191172948|ref|ZP_03034483.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           F11]
 gi|300998012|ref|ZP_07181915.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 200-1]
 gi|110344257|gb|ABG70494.1| hypothetical protein YfgF (putative membrane protein) [Escherichia
           coli 536]
 gi|190906812|gb|EDV66416.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           F11]
 gi|300304062|gb|EFJ58582.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 200-1]
          Length = 747

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|103487256|ref|YP_616817.1| diguanylate phosphodiesterase [Sphingopyxis alaskensis RB2256]
 gi|98977333|gb|ABF53484.1| diguanylate phosphodiesterase [Sphingopyxis alaskensis RB2256]
          Length = 763

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 185/457 (40%), Gaps = 22/457 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++    IA +++  ++       N     ++G+PN   F         L +       TV
Sbjct: 327 LVYVAAIATNVSRTRRRSSAQREN----PVSGLPN---FE-------ALRSLPPFGSATV 372

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           +   +  ++ +   +       ++  +TRR+  L      L       F  ++    +S 
Sbjct: 373 IAAKVVNFEDLAAFIPGDGIGKLVEQVTRRLQ-LASQGTTLHHDLDGTFAWLVPYYQHSQ 431

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                A  +      P+ + +  + V  + G          +  +      A    + R 
Sbjct: 432 IEGQLAG-LAALFNAPLTIGDLRVDVAIAFGVND-EFEGSNAQRLAAALVAAERAIRTRA 489

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                + R       ++     L  A+   ++++ + P   +    +VG+EAL +W HP 
Sbjct: 490 LWTKYTPRQKDGAGWQLSFHSQLEDALTGGDIWVAFQPQYEIATRRLVGVEALARWTHPT 549

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
            G I   EF++ AE+   I  + LF++++  R     R       I + +N+++  L  +
Sbjct: 550 RGPIPPDEFIIQAEKSQDIYRLTLFVMDQAIRSAAELR--GRGVHINMSVNLSATLLDHS 607

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
           +L   ++ +++     P  + +  +E+  + N  ++R  L +LR+ GI L++DD+GT  S
Sbjct: 608 DLVGTIRVMLTAHHLPPETLTIEITETAQIENSRQARQTLAQLRRTGIRLSIDDYGTGQS 667

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            L YL  I  D +K +   ++     ++   +++S I +A  +    +A+ I     +  
Sbjct: 668 NLEYLTEIEADEIKIDKRFVSTMHDSQRNREVVKSTIDLAHRLGAVAVAEGIEDAETMAL 727

Query: 927 LTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           L  +GCD  Q  H+  P  F+ ++  L    P  ++ 
Sbjct: 728 LASLGCDVGQGYHLGKPQLFSDLIAALTT-PPHSRSA 763


>gi|170767188|ref|ZP_02901641.1| inner membrane protein YfgF [Escherichia albertii TW07627]
 gi|170123522|gb|EDS92453.1| inner membrane protein YfgF [Escherichia albertii TW07627]
          Length = 589

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 177/444 (39%), Gaps = 24/444 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+     I   A+ D +  +PN ++    L                +
Sbjct: 150 IVNYMAVLA--TRQRVVSRRIQRLAYVDPVVHLPNIRALNRALRDA---------PWSAL 198

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 199 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLAPLLQPGEEVYQLSGNDLALRLNTESHQE 258

Query: 629 KIADFAIAMRKSIAMPINLLEREIT--VTASIGFASWTSSKITS--SEMLKNAELAMYHA 684
           +I      +++            +   +  S  +     + I     E+   AEL++   
Sbjct: 259 RITALDNHLKQF---RFFWDGMPLQPQIGVSYCYVRSPVNHIYLLLGELSTVAELSIVTN 315

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  +     D+V +   L  A+E+    L+  PI  +  +  V  E L++ 
Sbjct: 316 APENMQRRGAMYLQRELKDKVAMMNRLQQALEHDHFCLMAQPITGMRGD--VDHEILLRM 373

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I+   F+ +A E  +  +I+++++E   + +   R++         IN++   
Sbjct: 374 KGENNELINPDNFLPVAHEFGLSSSIDMWVIEHTLQFMAENREKIPAH--RFAINLSPTS 431

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFG
Sbjct: 432 VCQARFPVDIGRLLAKYQIEAWQLIFEVTESNALTNVKQAKITLQHLQELGCQIAIDDFG 491

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  + +K +GS +           I+ SI  +A+  +  ++A+ +  E 
Sbjct: 492 TGYASYARLKNVNANLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEYVENED 551

Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946
             + +  +G DY+Q   +  P   
Sbjct: 552 IRRAVQSLGIDYMQGYLIGKPQPL 575


>gi|291521967|emb|CBK80260.1| FOG: EAL domain [Coprococcus catus GD/7]
          Length = 650

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/426 (21%), Positives = 185/426 (43%), Gaps = 13/426 (3%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D+LTG+ N      ++  ++            ++ + + + K IN V G+  GD +L
Sbjct: 218 ANLDSLTGLYNHLYLTRKIGELIA-----SGKSFHIITVYLYQLKHINRVAGVQGGDSIL 272

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             +  ++G L      + R++G RF ++  S             +       +++ ++ I
Sbjct: 273 QQIAGQLGALC--GQKVTRITGKRFLVLTSSLEEYEYYFSKLKRLFDV-NTVLDVEDKNI 329

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKED 710
           TV   I           S  +++ AE         G   V      +         +++ 
Sbjct: 330 TVPVIISGIINAQKLGESGLIMEYAEYLESLTPQSGLTEVIQDDRQTMNGFMYYKRVEQY 389

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E     + Y P+    +   + +EAL +  HP+ G I+   F+ IAE+  MI+ I
Sbjct: 390 LHKAIEEDLFEVYYQPVYSTRERRFITVEALSRLYHPELGWIAPDVFIQIAEKNHMIEQI 449

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
                 RI R +   R+  +   + + +N++S DL+ N+       ++ +       I+ 
Sbjct: 450 TDMQFRRICRFLKENRELMSRL-LNVKVNLSSLDLMRNDCSSHFIRMMDEYEILHDWIQF 508

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V         +++  L   GI L LDDFG+  + L+ +  +PF T+K + SL+  
Sbjct: 509 EITETVATEYSASLGMVVDELTAAGIRLCLDDFGSGYANLNTVMRLPFSTIKLDRSLLFD 568

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
               EKR    +S++   + +   I+++ +    +++ ++R G D IQ  + + PL   +
Sbjct: 569 ICNDEKRAQFYQSVVETFRKMNYHIVSEGVETREEMELISRWGVDMIQGYYFSKPLPQEA 628

Query: 949 ILKLLK 954
           +++L++
Sbjct: 629 LIRLMQ 634


>gi|301021260|ref|ZP_07185291.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300398186|gb|EFJ81724.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 1105

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      ++     + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTVYEPQQAATNSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAENV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|218705602|ref|YP_002413121.1| putative sensor protein [Escherichia coli UMN026]
 gi|293405542|ref|ZP_06649534.1| sensor protein [Escherichia coli FVEC1412]
 gi|298381226|ref|ZP_06990825.1| yegE protein [Escherichia coli FVEC1302]
 gi|218432699|emb|CAR13593.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli UMN026]
 gi|291427750|gb|EFF00777.1| sensor protein [Escherichia coli FVEC1412]
 gi|298278668|gb|EFI20182.1| yegE protein [Escherichia coli FVEC1302]
          Length = 1105

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|256017349|ref|ZP_05431214.1| hypothetical protein ShiD9_00440 [Shigella sp. D9]
 gi|332278345|ref|ZP_08390758.1| inner membrane protein [Shigella sp. D9]
 gi|332100697|gb|EGJ04043.1| inner membrane protein [Shigella sp. D9]
          Length = 747

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGENVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|326387815|ref|ZP_08209421.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207861|gb|EGD58672.1| diguanylate cyclase/phosphodiesterase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 445

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 187/429 (43%), Gaps = 22/429 (5%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+ +     +   T L  +A         M++ + + + +N   G   GD VL+ 
Sbjct: 25  TDLLTGLAS----AEAARTWLRRTA--PAAPVLAMLVSLPRLQAVNLAYGKTHGDQVLIE 78

Query: 595 LTRRIGELLK----FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           + RR+ + +        ++ARL G +F +  + + +  +      A+ ++IA  + +   
Sbjct: 79  VARRVADFVDVELGSAALVARLGGGKFLVATVQDTSRERWQYLGEALGRAIARTLTVRGE 138

Query: 651 EITV---TASIGFASWTSSKITSSEMLKNAE-LAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           E  +   T  +  ++      +   +L + E  A    +  G   + +  V       + 
Sbjct: 139 EFHLLPRTVLLRSSALGEEGGSGEALLHHLEETATTLDRLSGRRMLWADDVLGTPGASLA 198

Query: 707 -IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ +L  A+   E+ +++ P   +    + G EAL +W+HP++G IS+     +A+   
Sbjct: 199 VLEGELLGAMHRDEISVLFQPQFDVATGRLAGAEALARWEHPRFGQISAETLFAVADRGD 258

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  ++  ++ R       W        + + +NI ++D    ++   ++ L+ +T ++ 
Sbjct: 259 HVAQLSRHIIGRAMALATQWP-----GHLRLSLNITAEDFALGDVVRTVRHLLGETGFAA 313

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R+ L  +E  ++ + E     L  L   G+ + LDDFGT  S    L  +P D +K + 
Sbjct: 314 GRLTLEITEQSLISDFEACARALRALATDGVRVALDDFGTGFSNFRTLKALPLDALKLDK 373

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           SL+       +  AI+ ++I MA+ +   +IA+ +  +  +  L   GCD  Q    + P
Sbjct: 374 SLVKDIAHDPRDRAIVSAVIAMARALAMKVIAEGVEHQQQLAILREEGCDLFQGFLRSGP 433

Query: 944 LGFNSILKL 952
           +     L+L
Sbjct: 434 MAPLEFLRL 442


>gi|331653929|ref|ZP_08354930.1| inner membrane protein YfgF [Escherichia coli M718]
 gi|331048778|gb|EGI20854.1| inner membrane protein YfgF [Escherichia coli M718]
          Length = 747

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|188997672|ref|YP_001931923.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932739|gb|ACD67369.1| diguanylate cyclase/phosphodiesterase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 426

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 176/420 (41%), Gaps = 22/420 (5%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D +TG+ N+    +       +      L   V+++D+D +  I+   G  + D +L 
Sbjct: 26  YIDKITGVYNKNYISE-------IEKNFHKLNFAVILLDLDNFSNIHKGYGKDIADLLLQ 78

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREI 652
            + + I   ++  DI+ R+  + F I++   +++         +   I+    NL+   +
Sbjct: 79  DVVKIIKNNIREEDIIIRIGDDEFLILVKKFDDNTNPLGITERIINKISLNKFNLINNTV 138

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
            +TAS G   +   +   S  LK A+ A+  AK +  N VE +           +  D+ 
Sbjct: 139 KITASAGIYLYPEKETDFSLALKKADTALLKAKQK-RNTVEIYSDGLEYRTDKRL-TDVK 196

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
           +A+E   L   Y PI  +   + +  EAL++   P+   I  + F+   +   + K +  
Sbjct: 197 IAIEEKRLICYYQPIFDMETMKTIKFEALVRIISPERKIIVPNLFLASIKNTYVYKELTK 256

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            ++E                 I + IN+   D+LD ++   + +L        S I L  
Sbjct: 257 KIIE-------FNLFIVRTKKIKVSINLLPSDILDIDIINFLTSLSKDF---TSMITLEI 306

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
            ES  + +  + R  L  L+K G  + LDDFG+  S + +L  +  D +K +G ++    
Sbjct: 307 LESESVDDYGKLRENLQILKKAGYEIALDDFGSGFSNILHLIELQLDYLKIDGQIIRKID 366

Query: 893 EK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +       +++I  + K I    IA+ +  +    +L  +G DY Q  +   PL  + I 
Sbjct: 367 KDPISYTAVKAIKSLTKEINIKTIAEFVSNKEIYDKLKEIGIDYGQGFYFKEPLHPSEIR 426


>gi|157144565|ref|YP_001451884.1| hypothetical protein CKO_00285 [Citrobacter koseri ATCC BAA-895]
 gi|157081770|gb|ABV11448.1| hypothetical protein CKO_00285 [Citrobacter koseri ATCC BAA-895]
          Length = 749

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 176/436 (40%), Gaps = 18/436 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L          ++    +  + +   + +
Sbjct: 319 TRQRIVSGRARRLAYLDPVVHLPNLRALNRVLK---------NSPWSALCFLRVPGLELL 369

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  LL   + + +LSG+   + L  E++  +I      +++
Sbjct: 370 GKNYGVMLRIQYKQKLSHWINTLLAPGECVYQLSGHDLILRLNMESHQQRIEALDNHIKQ 429

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRV 697
                 + +  +  V  S  +     S I     E+   A+L++   K        +  +
Sbjct: 430 -FRFMWDDMPLQPQVGVSYCYVRSPVSHIYLLLGELSTIADLSLMTNKPENMQRRGAMHL 488

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                D+V +   L  A+E+    L+  PI  +  +  V  E L++      G I+   F
Sbjct: 489 QRDLKDKVAMMNRLQYALEHDHFCLMAQPISGIRGD--VYHEILLRLKDDNGGMINPDGF 546

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +A E  +  +I+L+++E   R +   RD+         IN++   +   +    +  L
Sbjct: 547 LPVAHEFGLSSSIDLWVIENTLRFMAENRDKLPAH--RFAINLSPTSVCRAQFPIDVSNL 604

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +S+      ++    +ES    N E+ +  L +L+++G  + +DDFGT  +  + L  + 
Sbjct: 605 LSQYEVEAWQLIFEVTESNAFTNAEQGQATLSQLQQLGCQIAIDDFGTGYASYARLKNVS 664

Query: 878 FDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            + +K +GS +           I+ SI  +A+     ++A+ +  E     ++ +G DY+
Sbjct: 665 ANILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSAVSALGIDYL 724

Query: 936 QDSHVASPLGFNSILK 951
           Q   +  P    + L+
Sbjct: 725 QGYLLGEPRPLAATLE 740


>gi|193068367|ref|ZP_03049330.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           E110019]
 gi|260845133|ref|YP_003222911.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|293446857|ref|ZP_06663279.1| inner membrane protein yfgF [Escherichia coli B088]
 gi|192958319|gb|EDV88759.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           E110019]
 gi|257760280|dbj|BAI31777.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|291323687|gb|EFE63115.1| inner membrane protein yfgF [Escherichia coli B088]
          Length = 747

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|191167665|ref|ZP_03029474.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           B7A]
 gi|209919980|ref|YP_002294064.1| hypothetical protein ECSE_2789 [Escherichia coli SE11]
 gi|218555028|ref|YP_002387941.1| hypothetical protein ECIAI1_2555 [Escherichia coli IAI1]
 gi|260856597|ref|YP_003230488.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|260869192|ref|YP_003235594.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|300820829|ref|ZP_07100979.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 119-7]
 gi|300922213|ref|ZP_07138347.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|301329030|ref|ZP_07222054.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 78-1]
 gi|331669247|ref|ZP_08370095.1| inner membrane protein YfgF [Escherichia coli TA271]
 gi|331678491|ref|ZP_08379166.1| inner membrane protein YfgF [Escherichia coli H591]
 gi|190902264|gb|EDV62004.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           B7A]
 gi|209913239|dbj|BAG78313.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218361796|emb|CAQ99395.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|257755246|dbj|BAI26748.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257765548|dbj|BAI37043.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|300421425|gb|EFK04736.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|300526582|gb|EFK47651.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 119-7]
 gi|300844611|gb|EFK72371.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 78-1]
 gi|320200065|gb|EFW74654.1| Putative cytochrome C-type biogenesis protein [Escherichia coli
           EC4100B]
 gi|323156108|gb|EFZ42267.1| EAL domain protein [Escherichia coli EPECa14]
 gi|323177375|gb|EFZ62963.1| EAL domain protein [Escherichia coli 1180]
 gi|324020062|gb|EGB89281.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 117-3]
 gi|331064441|gb|EGI36352.1| inner membrane protein YfgF [Escherichia coli TA271]
 gi|331074951|gb|EGI46271.1| inner membrane protein YfgF [Escherichia coli H591]
          Length = 747

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|157156852|ref|YP_001463825.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Escherichia coli E24377A]
 gi|157078882|gb|ABV18590.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli E24377A]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|315300468|gb|EFU59698.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 16-3]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I+     +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RISALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EVVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|323944724|gb|EGB40791.1| MASE1 protein [Escherichia coli H120]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|300817730|ref|ZP_07097945.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 107-1]
 gi|300529718|gb|EFK50780.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 107-1]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|225849829|ref|YP_002730063.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225645036|gb|ACO03222.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 599

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/414 (22%), Positives = 179/414 (43%), Gaps = 29/414 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+  R+ FL+ L    + S          ++I++  ++ IN++    VGD VL   
Sbjct: 205 DELTGLFTRKKFLNDLPKFKNRS---------CLLINLKNFRFINEIYSPQVGDKVLQEF 255

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI--T 653
              + +     + + R+ G++F I+    NN  +  +F   + K +   I +    +   
Sbjct: 256 AILLKKKSLSEN-VYRIFGDKFAIVF---NNEDQSINFYRNIVKFLQSGIKVFHEVLNEY 311

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYH-AKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
           VT ++        KI S+  L+ A +A    A       +    +       +   E + 
Sbjct: 312 VTVNVQVKFIIIKKIDSN-FLERAMIAFKKTAYQEKDLIIYEDTILPQMEKELKSIEVIQ 370

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A+EN ++   +  I+ L        EAL++    +   +   +F+  A+E  +   ++ 
Sbjct: 371 KAIENDKVIPAFQKIVNLNTGS-EYYEALMRIKSGRKVYLP-GDFLTPAKETGLYPKLSN 428

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            M +++   I             I INI   D+L     +     I ++  SP +I L  
Sbjct: 429 IMFDKVVEAIK-------NTGYKISINIEITDILRKNFIDYTIKKIKRSGVSPDKIILEL 481

Query: 833 SESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           +E+  M      ++ +L  L++ G  +++DDFG+  S  SYL  +P D +K +GSL+   
Sbjct: 482 TETEDMSRMIRYAQDILQTLKREGFYISIDDFGSGYSNFSYLTKLPVDIIKIDGSLIKNL 541

Query: 892 TEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            + R    I++SII M+K +    +A+ +      + +  +G DY+Q  ++  P
Sbjct: 542 EKSRKNLLIVKSIISMSKLLGIETVAEFVNSREIYQIVENLGVDYVQGFYIDKP 595


>gi|289207647|ref|YP_003459713.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
 gi|288943278|gb|ADC70977.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Thioalkalivibrio sp. K90mix]
          Length = 690

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/592 (15%), Positives = 201/592 (33%), Gaps = 20/592 (3%)

Query: 363 DNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
            +  +       L  ++ +      +           +     R  L +  S D +  + 
Sbjct: 99  GSFAVVDHEQVELASLMAIRAAEQRRLRQRIQRLEAALHESENRCQLLLDNSRDAI-AYV 157

Query: 423 IVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG-RLQ 480
                +          G+     + G     +  +  ++R   + +L  F     G   +
Sbjct: 158 HEGMHLYANASWRERFGIEDPDEVDGLP--LMDLVTADNRGEMKALLRRFQNGEEGDTAR 215

Query: 481 YEFRVRAADNQFH--WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             F +++ D       + +    +       L+      D     +  E I   + +D +
Sbjct: 216 AHFHLQSIDGLPFEADLRLSAASVEGEACTQLQLEASQEDP----ELAERIDFLSQRDLV 271

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NRQ FL  + +    +   +     ++ + +D++ +I   +G++  D +L  + + 
Sbjct: 272 TGLYNRQHFLSAIESAQTRAEETEKP-FALLTLAVDRFAEIRAKVGMSAADLLLADMGKL 330

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           I +    P I ARL G  FG++                M+   A    L +     T S 
Sbjct: 331 IEDHFPEPAIAARLEGEHFGVLAPETRRQEVEERVHGLMQAVTAHVFELNQSSTNCTLSA 390

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKEDLCLA 714
           G      S  ++ ++L  A  A+  A   GG     +  +    +        K  +  A
Sbjct: 391 GVVIADESAPSTEDLLDQAHRALEEAVEAGGGVHRFYHPAEGELTQGQADQQWKLRIQDA 450

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +++  L L + PI+ L   +       ++             F+  AE   M  A++ ++
Sbjct: 451 LDHDRLELRFQPIVHLHGNDRPRYSVFVRLRDADGHLHEPPAFLPAAERTGMAPAVDRWI 510

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           ++    ++            F+   + +  + D  +   +   +         + +   E
Sbjct: 511 VKTALTELAGCLKTQPKTQFFLK--LGTGSMGDPTVVSWLNDDLHALRIPADNVVVELKE 568

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
             V+ N + +  +   L ++   L +DDFG   +    L ++  D +K + S + G    
Sbjct: 569 PTVVTNLKPAMNVSRGLVEMHSHLCIDDFGNGLNPFQLLQHLEADHIKLDPSFVEGLAEN 628

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           E+    +R  +  A      +I   +     +  L  +  + +Q   + SPL
Sbjct: 629 EENQEAIREYVDAAHAKGKQVIVPHVEDASVLAVLYGLNVNLVQGYFIQSPL 680


>gi|171059869|ref|YP_001792218.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
 gi|170777314|gb|ACB35453.1| diguanylate cyclase/phosphodiesterase [Leptothrix cholodnii SP-6]
          Length = 600

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 193/448 (43%), Gaps = 31/448 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+P+R+ FLDRL      +          +++  +    + D L  +  D ++ +L
Sbjct: 149 DRLTGLPSRELFLDRLEQA-ASAVMRGGYAFATLMVGFEWPANLTDGLSTSSADSLIETL 207

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
           +RR+  L +  D  AR+ G+ F  +L+  N+       A  + + +A P+ +  R +   
Sbjct: 208 SRRLQRLGRRSDSYARIGGHTFAALLLGNNSVGGSTSMAHKIAEQLARPLMVDGRSMDPI 267

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            S+G A        +  +L +A+ AM  A+H   + V  +     RS    +  D     
Sbjct: 268 VSVGVALCPQHGTDARSVLLHAQAAMEQAQHS-RHPVAVYDARYHRSSHAALHPDAAAMP 326

Query: 716 --------------ENSELYLVYHPIIRLM-------DEEIVGLEALIQWDHPKWGNISS 754
                         E  +  L + P++ L        D  +  LE L +W  P  G+I+ 
Sbjct: 327 PGDEALAPLLAEALERRQFTLAFQPVVDLKAGPDGSLDWTLRRLEVLARWHSPAHGHIAP 386

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + F+ +AE   +I  +   +L++       WR Q  +P   I +N+++  L D +L + +
Sbjct: 387 AVFIPVAEHHALIGQLTDQLLDQALSAATPWRSQTLVPA--ISLNLSAHLLDDPDLPDRV 444

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q+ +    +    + L  S S +    +++  +L RL ++G+ L LDDFG+       L 
Sbjct: 445 QSALQAHKWPAGALMLEVSASALAQPSQQAHDVLARLGQLGVRLVLDDFGSGLGAYLALA 504

Query: 875 YI-PFDTVKFN-GSLMTGS----TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
            +     +K +  +L   +    +++  A+LRS+I +A+ +   +IAK +        L 
Sbjct: 505 ELGSLAELKIDLRALRRNAGSARSDRGAAVLRSLITLAQGLGAEVIAKGVEDAGTAAWLQ 564

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
           ++GC   Q    + PL    +      +
Sbjct: 565 QLGCHAAQGHAWSRPLPAEQVRAWCTAQ 592


>gi|330875382|gb|EGH09531.1| GAF domain/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 322

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/293 (25%), Positives = 140/293 (47%), Gaps = 8/293 (2%)

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA-VENSELYL 722
           T  +     ++  A+ A        G  +      + +     +   L  A   + +L L
Sbjct: 12  TEEQDWMRMVISAADDARD---RNLGWAMYEPHFDAAQQRAFKLLSSLTSAVHSHDQLRL 68

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
           VY P I L       +EAL++W+HP  G I  +EF+ +AE+  +++ ++L++L       
Sbjct: 69  VYQPRIDLASGLCTSVEALLRWNHPTLGPIGPAEFVPLAEKTALMRPLSLWVLTSAIEQA 128

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W+ Q       I IN+  +DL      + M  L+ +    P+R +L F+E  +M NP 
Sbjct: 129 ARWQQQGFD--FRIAINVTPEDLTGPAFTDRMIRLLGQHKIDPTRFELEFTEGALMHNPA 186

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILR 900
             R  L R+R++G+ + +DDFGT  S  +YL  +P  TVK + SL+           +++
Sbjct: 187 EVRHQLERMRQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNLASDKTDQRLVK 246

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++I +AK +   ++A+ I  +   + + + GCD  Q   ++ P+  +++L  L
Sbjct: 247 ALIGLAKKLGYCVVAEGIETDEIRRLVKQWGCDEGQGYLISKPMEADAVLNWL 299


>gi|323170228|gb|EFZ55881.1| EAL domain protein [Escherichia coli LT-68]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+++      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLARYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|332092739|gb|EGI97808.1| EAL domain protein [Shigella boydii 3594-74]
          Length = 601

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 181/439 (41%), Gaps = 20/439 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 179 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 227

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 228 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 287

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 288 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 346

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 347 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 404

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 405 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 462

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 463 QARFPFEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 522

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 523 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 582

Query: 925 KELTRMGCDYIQDSHVASP 943
           + +  +G DY+Q   +  P
Sbjct: 583 EAVLSLGIDYMQGYLIGKP 601


>gi|300903517|ref|ZP_07121441.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 84-1]
 gi|301302857|ref|ZP_07208985.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 124-1]
 gi|307312503|ref|ZP_07592136.1| diguanylate cyclase/phosphodiesterase [Escherichia coli W]
 gi|300404469|gb|EFJ88007.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 84-1]
 gi|300841792|gb|EFK69552.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 124-1]
 gi|306907426|gb|EFN37930.1| diguanylate cyclase/phosphodiesterase [Escherichia coli W]
 gi|315061821|gb|ADT76148.1| predicted inner membrane protein [Escherichia coli W]
 gi|315256521|gb|EFU36489.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 85-1]
 gi|323377598|gb|ADX49866.1| diguanylate cyclase/phosphodiesterase [Escherichia coli KO11]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|293608563|ref|ZP_06690866.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829136|gb|EFF87498.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 395

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 119/266 (44%), Gaps = 3/266 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         + +DL LA+   +  L Y P I   +  I G EAL++W HP  G
Sbjct: 127 CISIYTMQLEIQTESTMMQDLRLALVKEQFELFYQPQINASETRI-GAEALLRWHHPVLG 185

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + +F+  AE   ++  I  ++L +  + +  W  +A    + + INI+    +    
Sbjct: 186 YIPTKDFIPAAETFGLMPEIGEWVLAQACKVLQDWSKKAETKDLTLSINISPDHFMQPNF 245

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  LI K   +PSR+ L  +E++ + N       +  L K G+ L+LDDFGT  S L
Sbjct: 246 EQTVIGLIQKYEVNPSRLTLEITENIGLTNCVSMIEKMNFLSKQGVQLSLDDFGTGYSSL 305

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 306 SYLQKMPISQIKIDRSFVQSALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETTEQFSVFK 365

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
             GC   Q      P+  N  +K + 
Sbjct: 366 NNGCTEFQGYLWGCPMPLNDFVKQIA 391


>gi|258626018|ref|ZP_05720876.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581697|gb|EEW06588.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 612

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 193/435 (44%), Gaps = 16/435 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           ++  +T +PNR  F+ RL   ++L   + + +  V    I K K +N +    V + +++
Sbjct: 167 YRCEVTQLPNRLGFIRRLQAQINL---NPDQKVFVGTAHIQKMKYLNIIYDNEVKNSLIL 223

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++++R+        +L+ +    F      E+    +      +  ++  PI + +  ++
Sbjct: 224 AMSQRLRSF-PNWTLLSHIGEGNFAFAWFGEDKRSDVE----RLLATLCEPIPIKDTLVS 278

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           +T +IG    +S + +S  +L  AELA +     G  +V   +     +  + ++  L  
Sbjct: 279 ITVNIGITCSSSGQSSSVALLDLAELASHEWNKAGIANVHYEQADCNNAMIMAVRACLHT 338

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              ++ +   Y P I +   E+VG EAL++W +P++ N+   +   + E   ++ AI+L 
Sbjct: 339 DSLDNYITPHYQPQIDIASGELVGFEALLRWHNPQFQNVPLHQLFELIEINGIVPAIDLL 398

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + +++   I  WR      P  I  NI+   L  N+L   +  +  K   SP+   L  +
Sbjct: 399 IFKKVCEHISQWRASGLTLP-KISTNISRTTLQTNQLTNQLLTIAEKYGLSPNLFTLEIT 457

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES V          +  LR+ G ++ +DDFGT  S ++ L  I    +K +     G + 
Sbjct: 458 ESGVPLEERILFERINTLRQAGFNIAIDDFGTGMSNIATLKNIDSQLLKVDRQFAHGVSA 517

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                A+LR I   A ++   ++ + I  + D+  L   G D +Q  + A  L    I  
Sbjct: 518 NGHIAALLRLIKGTADSLNIALLVEGIEEQEDVDWLRSAGIDLVQGWYFAKALTPELIPS 577

Query: 952 LLKE-----RFPLVK 961
           +L E     +FP ++
Sbjct: 578 VLSELRQQPKFPTIQ 592


>gi|300697838|ref|YP_003748499.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           CFBP2957]
 gi|299074562|emb|CBJ54113.1| putative signal transduction protein ggdef domain [Ralstonia
           solanacearum CFBP2957]
          Length = 490

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 3/337 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V A     + + +  ER +  + G+G   +DW +    V+     A +LG    
Sbjct: 152 IVQVQDVTARRLALESLQASEERLAYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGYEPD 211

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            +    ++W   +H  D       +   +       + E R+R A+ Q+ W+  R R   
Sbjct: 212 ELSSDPQDWFAMVHPQDAVLSMRRIYRHLRGDADSFEVEQRLRGAEGQWVWVSARGRVTQ 271

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G  +R  G   D+T+++  L+     A  D LT +PN +   DRL   +  +    
Sbjct: 272 RDGFGIAVRVSGTLQDVTKRRAMLDQAHHLALHDPLTDLPNARLLRDRLFVAIQAARRAR 331

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +L   V+ +D+D++K IND  G  VGD VL +   R+   L+  D +ARL G+ F  +L 
Sbjct: 332 SL-VAVVFVDLDRFKPINDEYGHGVGDLVLKATAMRLRSGLRASDTVARLGGDEFVAVLT 390

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P  +    +++  S G A + S    +  +++ A+ AMY
Sbjct: 391 HCQTRDDVEQTVERLIEQLQAPFRVEGHVLSMGVSAGVALYPSDGRDAQGLIRCADAAMY 450

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
             K  GG     F  S      + +++    A  + E
Sbjct: 451 EVKRAGG-SGFGFHASLNYERLMNMRQRGPDADGDGE 486



 Score = 73.4 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 3/129 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +  D      A+  S   +         +     + T+ G  + ++    R+     H 
Sbjct: 41  AMLEDHHLYKAAIEHSPIGIGLCAPEGRFLDVNRALCTLTGHEAQAL--RARDLFDLCHP 98

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  D  R  +++ +   +  L  E R    D    W+   +       GD    I    D
Sbjct: 99  DHADRTRERVEALLAGEQDALSLETRFVRPDGSTVWVQADLAVTREDAGD-GHLIVQVQD 157

Query: 519 ITEQKKSLE 527
           +T ++ +LE
Sbjct: 158 VTARRLALE 166


>gi|262164238|ref|ZP_06031976.1| GAF domain/GGDEF domain/EAL domain protein [Vibrio mimicus VM223]
 gi|262026618|gb|EEY45285.1| GAF domain/GGDEF domain/EAL domain protein [Vibrio mimicus VM223]
          Length = 612

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/435 (22%), Positives = 194/435 (44%), Gaps = 16/435 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           ++  +T +PNR  F+ RL   ++L   + + +  V    I K K ++ +    V + +++
Sbjct: 167 YRCEVTQLPNRHGFIRRLQAQINL---NPDQKVFVGTAHIQKMKYLSIIYDNEVKNSLIL 223

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++++R+        +L+ +    F      E+    +      +  ++  PI + +  ++
Sbjct: 224 AMSQRLRNF-PNWTLLSHIGEGNFAFAWFGEDKRSDVE----RLLATLCEPIPIKDTLVS 278

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           +T +IG    +S + +S  +L  AELA +     G  +V   +     +  + ++  L  
Sbjct: 279 ITVNIGITCSSSGQSSSVALLNLAELASHEWNKAGIANVHYEQADCNNAMIMAVRACLHT 338

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              ++ +   Y P I +   E+VG EAL++W +P++ N+   +   + E   ++ AI+L 
Sbjct: 339 DSLDNYITPYYQPQIDIASGELVGFEALLRWHNPQFQNVPLHQLFELIEINGIVPAIDLL 398

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + +++   I  WR      P  I  NI+   L  N+L   +  +  K   SP+   L  +
Sbjct: 399 IFKKVCEHISQWRASGLTLP-KISTNISRTTLQTNQLTNQLLTIAEKYGLSPNLFTLEIT 457

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES V          +  LR+ G ++ +DDFGT  S ++ L  I    +K +     G + 
Sbjct: 458 ESGVPLEDRILFERINTLRQAGFNIAIDDFGTGMSNIATLKNIDSQLLKVDRQFAHGVSA 517

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                A+LR I   A ++   ++ + I  + D+  L   G D +Q  + A  L    I  
Sbjct: 518 NGHIAALLRLIKGTADSLNIALLVEGIEEQEDVDWLRSAGIDLVQGWYFAKALTPELIPS 577

Query: 952 LLKE-----RFPLVK 961
           +L+E     +FP ++
Sbjct: 578 VLRELRQQPKFPTIQ 592


>gi|167756835|ref|ZP_02428962.1| hypothetical protein CLORAM_02384 [Clostridium ramosum DSM 1402]
 gi|167703010|gb|EDS17589.1| hypothetical protein CLORAM_02384 [Clostridium ramosum DSM 1402]
          Length = 422

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 155/433 (35%), Gaps = 62/433 (14%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S + +   ++ DN T   NR  ++     + ++     +    ++ +D++  K +ND  
Sbjct: 43  ESQKKLSYLSYHDNSTTFYNRNRYIKDTQKLFNM-----DTSLGIIYLDVNGLKDVNDQF 97

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +LV   RR+  + K  D   R+ G+ F II  S               K ++ 
Sbjct: 98  GHEVGDALLVECARRMKMVFKKADF-YRIGGDEFIIICQSIKKES-----FEKRVKELSE 151

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV---ESFRVSSF 700
             +   ++     +IG     +     +EM+  A+  MY  K    +       +R  S 
Sbjct: 152 SFS---KKPVCQVAIGTQWTNAVG-NINEMIAEADARMYENKKEFYHKHMISRRYRHHSD 207

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +   + L   +EN    +   P I   D   VG EALI++       I        
Sbjct: 208 EMLHLTNIDYLESEIENGHFVVYLQPKILCEDRSCVGAEALIRYCDNAGTLIP------- 260

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
                                              + IN + + L      E +     K
Sbjct: 261 -----------------------------------LSINFSIESLRGKSFVERILETCKK 285

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I++  +E V        + ++ +LR  G  + +DDFGT+ + L+ L    FD 
Sbjct: 286 YQIPTKYIEIEITERVHDEKNFEIKTVISKLRSAGFIVAIDDFGTEYANLALLSDAEFDI 345

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + SL++      +   I+  I  +   +   +IA+ I  E     L   G + +Q  
Sbjct: 346 LKLDKSLISNVALNPRTKIIMEYISKICHRLGLDMIAEGIESEEQFFTLCSYGVETVQGY 405

Query: 939 HVASPLGFNSILK 951
             + PL  N   +
Sbjct: 406 LFSKPLAINVFEE 418


>gi|15803026|ref|NP_289056.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 EDL933]
 gi|15832619|ref|NP_311392.1| cytochrome C-type biogenesis protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168748439|ref|ZP_02773461.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756274|ref|ZP_02781281.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168768594|ref|ZP_02793601.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773584|ref|ZP_02798591.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778468|ref|ZP_02803475.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787848|ref|ZP_02812855.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC869]
 gi|168798873|ref|ZP_02823880.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC508]
 gi|195936645|ref|ZP_03082027.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809135|ref|ZP_03251472.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812831|ref|ZP_03254160.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821412|ref|ZP_03261732.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400743|ref|YP_002271972.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327756|ref|ZP_03443839.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794448|ref|YP_003079285.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223064|ref|ZP_05937345.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259384|ref|ZP_05951917.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283723|ref|YP_003500541.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|12516891|gb|AAG57613.1|AE005479_11 putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362835|dbj|BAB36788.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770737|gb|EDU34581.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017079|gb|EDU55201.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003325|gb|EDU72311.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356611|gb|EDU75030.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362185|gb|EDU80604.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372301|gb|EDU90717.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189378614|gb|EDU97030.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC508]
 gi|208728936|gb|EDZ78537.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734108|gb|EDZ82795.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741535|gb|EDZ89217.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209162143|gb|ACI39576.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|209763490|gb|ACI80057.1| putative cytochrome C-type biogenesis protein [Escherichia coli]
 gi|209763492|gb|ACI80058.1| putative cytochrome C-type biogenesis protein [Escherichia coli]
 gi|209763494|gb|ACI80059.1| putative cytochrome C-type biogenesis protein [Escherichia coli]
 gi|209763496|gb|ACI80060.1| putative cytochrome C-type biogenesis protein [Escherichia coli]
 gi|217320123|gb|EEC28548.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|254593848|gb|ACT73209.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763596|gb|ADD57557.1| Putative cytochrome C-type biogenesis protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|320188835|gb|EFW63494.1| Putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. EC1212]
 gi|320657180|gb|EFX24989.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662786|gb|EFX30118.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667590|gb|EFX34505.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326340300|gb|EGD64104.1| Putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. 1125]
 gi|326344984|gb|EGD68728.1| Putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. 1044]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRTVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|262404126|ref|ZP_06080681.1| Rtn protein [Vibrio sp. RC586]
 gi|262349158|gb|EEY98296.1| Rtn protein [Vibrio sp. RC586]
          Length = 817

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/553 (16%), Positives = 188/553 (33%), Gaps = 44/553 (7%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     M G   +      H      +  +        
Sbjct: 136 GVVITDGQTRILACNRYFEEQTGYQQSEMLGLKTSLFNSGKHSQ--HFYVDMWHQLQEQ- 192

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G        + +  +     + I+ +S   G I  YIG   D+      L+ ++     
Sbjct: 193 -GWWDGTILSQRSSGEIWPQDLSIKRLSPQKGQI-FYIGFTTDLA---PHLDRVIDQQAG 247

Query: 536 DN--LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           D   LT +P    F  +L   L                       I            + 
Sbjct: 248 DVELLTQLPTLAKFSAQLKQRLLGHLATTGFVLA-----------IQPKFSSDKYYAQIR 296

Query: 594 SLTRRIGELLKFPDILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLER 650
            L   + +       L    G   F   L +E  +    +      +R+           
Sbjct: 297 GLAASLAQ--NRQVQLCGYHGEGIFLCQLDAEKGADNKPLLGIQRTLRQFFEELHKRGGH 354

Query: 651 EITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRV 705
            I        +G +           ++ +A  AM  +HA      +     +      R 
Sbjct: 355 VIHQAIAQGRLGVSVLGGDTQNVDHLIPHALQAMLEHHAGDTRHINFYDQTMHQQAERRK 414

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ +   ++N ++ + Y PII      IV  EAL ++  P+  + ++ E + IAEEL 
Sbjct: 415 TLEKWVQKWIDNGDVEVFYQPIIDSQTWSIVKFEALCRFQAPEVLHATTQELITIAEELG 474

Query: 766 MIKAINLFMLERIARDIISWRDQANMP-----PIFILINIASKDLLDNELCEGMQALISK 820
           +I  ++  +  +   D+                  + + + ++ +L          ++++
Sbjct: 475 LIDRLDGIVGRKALSDLPKIHALFGYHIGVTINRSLSVGLTAEQILRVN-----ADMLAE 529

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                  I +  +ES    +  +   +L  LR +G+++ +DDFGT  S  SYL    FD 
Sbjct: 530 QPELAKYITIELTESAYFDSRSQGSKMLQSLRDMGVTIAIDDFGTGFSSFSYLTECQFDY 589

Query: 881 VKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   ++G     +R AI++ +  +A  +E  ++A+ +  E ++  L  +G D +Q  
Sbjct: 590 LKIDREFVSGIELGSRRYAIVKMMTDLAHTLEVKVVAEGVETEYEVHVLRSLGVDLLQGF 649

Query: 939 HVASPLGFNSILK 951
             A PL  + ++ 
Sbjct: 650 FFAKPLPISRLIH 662


>gi|283785887|ref|YP_003365752.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282949341|emb|CBG88952.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 990

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/579 (17%), Positives = 206/579 (35%), Gaps = 25/579 (4%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           + Q   A    ++ +F + ER  + +   G+ V   D+        P   T+ G    + 
Sbjct: 417 LKQTERANKRLNEALFQEKERLHITLDSIGEAVVCIDVDMKVTFMNPVAETMSGWQQENA 476

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G     + +I   D       + S     R  ++ +  +   +   + +   I P+S  
Sbjct: 477 IGMPLLTVMHITFGDSGPLMENIYSA-DMSRSAIEQDVVLHCRNGGSYDIHYSITPLSTL 535

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           NG  +  + +  D+TE +K L  +  +A  D LT + NR SF ++L  +L       +  
Sbjct: 536 NGGNIGSVLVIQDVTESRKMLRQLSYSATHDALTHLTNRPSFENKLRQLLQTV-RGSHQH 594

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++ ID+D++K +ND  G A GD +L  L++ +   L+  D+LARL G+ FG++L   N
Sbjct: 595 HALVFIDLDRFKAVNDSAGHAAGDALLRELSQLMLSTLRPGDVLARLGGDEFGLLLPDCN 654

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
                      +            R   V  S G      +     E++  A++A Y +K
Sbjct: 655 IENARVITTRIITAVNDYHFMWEGRLHRVGTSAGITLIDDNNCQPVEVMSQADIACYASK 714

Query: 686 HRGGNHVESFRVSS----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           + G   V  +             + + E   +  EN  L +        + E        
Sbjct: 715 NSGRGRVTVYEPQQEMAAHERAMMSLDEQWHMIKENHLLMIARAVASPRIPEARSLWLVS 774

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++    +   +    F     +  +  A++  +                   + I + ++
Sbjct: 775 LRLWTSEGEVMEEQAFRTGLADPALTHALDRRVFHEFFHHAAP---AVARKGLSIALPLS 831

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
              L    L + +   +  +      + L      ++ +P+ S   + +LR+ G  + L 
Sbjct: 832 VAGLTSTTLMDELLRQLELSPLPGRLLHLIIPAEALLLHPQESVSAMQKLRQAGCRIIL- 890

Query: 862 DFGTKCSLLSY-LGYIPF------DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETT 912
                 S +S  L           D +  +  L            ++  I   A+ +   
Sbjct: 891 ------SQISRDLQIFNLMSKNMADYLLLDSDLSASIHGNLMDEMLVSIIQGHAQRLGCK 944

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
            IA  +   + +  L+ +G D I    +A     + +L 
Sbjct: 945 TIAGPVQAPVVMDTLSGIGIDQIYGDIIAEAQPLDLLLN 983


>gi|312967780|ref|ZP_07781995.1| EAL domain protein [Escherichia coli 2362-75]
 gi|312287977|gb|EFR15882.1| EAL domain protein [Escherichia coli 2362-75]
          Length = 747

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNTP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V++   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVVMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I++++LE   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVLEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|313681838|ref|YP_004059576.1| diguanylate cyclase/phosphodiesterase with gaf sensor [Sulfuricurvum
            kujiense DSM 16994]
 gi|313154698|gb|ADR33376.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Sulfuricurvum
            kujiense DSM 16994]
          Length = 1862

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 172/415 (41%), Gaps = 24/415 (5%)

Query: 535  QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
             D LTG  +RQ   + L           N    +++I+I+    +N   G A+GD++L S
Sbjct: 1459 HDKLTGCLSRQKLDEVL---------MKNDFSALLLININNLDSVNSTYGYAIGDEILKS 1509

Query: 595  LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
                +  LL+    L RLS + F +I+   +++ K    A  ++        + +  I +
Sbjct: 1510 FVNFLYRLLEDTKSLFRLSSDEFVVIVDKNSSTDKEMLAATIIKSLQDYKFIIEDFLIIL 1569

Query: 655  TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS----SFRSDRVMIKED 710
            + +IG  + T         L  A  AM  A+  G N   ++         + + +     
Sbjct: 1570 SCTIGITANTVEDSD-ESPLVRAHAAMKEARQSGTNKFLTYTSDSLFIRHQKNNIEWMLK 1628

Query: 711  LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
            +  A+ N+ +   + PII     +IV  E L +        I+   F+  A    ++  I
Sbjct: 1629 VKDAIANNVIVPFFQPIIDNETNQIVKYECLARLV-ENSNIIAPIHFIEPARLAGLLPKI 1687

Query: 771  NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
               +  +  +                 INI+ +DL +  L + ++ L  K   +P+R+ L
Sbjct: 1688 TEIIFAKSFQYFQ-------DKSYDFTINISEEDLKEKYLLDLLKTLTQKHNIAPNRVTL 1740

Query: 831  SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
               E++     E +   L  L+  G  + LDDFG++ S    L  +  D +K +GS +  
Sbjct: 1741 EILENISAYESEAAIEQLLELKMNGYKIALDDFGSEKSNFLRLQKMNVDYIKIDGSFIKD 1800

Query: 891  STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
              E +    I ++I+ +A+ ++  +IA+ ++     + + ++G  Y Q  +   P
Sbjct: 1801 IHENKNNLNICKTIVHLAQALKCEVIAEFVHSSDVHEVVKQIGIKYSQGYYFGMP 1855


>gi|218559427|ref|YP_002392340.1| hypothetical protein ECS88_2675 [Escherichia coli S88]
 gi|218366196|emb|CAR03942.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
          Length = 747

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQRALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQYLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|209763488|gb|ACI80056.1| putative cytochrome C-type biogenesis protein [Escherichia coli]
 gi|320646289|gb|EFX15216.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H- str. 493-89]
 gi|320651794|gb|EFX20174.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H- str. H 2687]
          Length = 747

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRTVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|331663561|ref|ZP_08364471.1| putative sensor-type protein [Escherichia coli TA143]
 gi|331059360|gb|EGI31337.1| putative sensor-type protein [Escherichia coli TA143]
          Length = 1105

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKTVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAATHSERAAISLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|260881279|ref|ZP_05404051.2| putative response regulator/GGDEF domain/EAL domain protein
           [Mitsuokella multacida DSM 20544]
 gi|260849016|gb|EEX69023.1| putative response regulator/GGDEF domain/EAL domain protein
           [Mitsuokella multacida DSM 20544]
          Length = 1452

 Score =  278 bits (711), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/425 (22%), Positives = 180/425 (42%), Gaps = 13/425 (3%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTV-MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           RQ FL     IL     + +L  +  +  +I  +   N   G   GD  L  +   + E+
Sbjct: 21  RQEFLRDAADILQREWREYHLLKSCPVFFNITNFHLYNATHGFRQGDLCLQHIEGILREV 80

Query: 603 LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFAS 662
                ++  L  + F ++    N   +I      ++  I  P       I + A I F S
Sbjct: 81  FPERPVI-HLGADNFAVLAEEANVQARIDKACQRVQAYIGNP------NIALKAGIRFLS 133

Query: 663 WTSSKITSSEMLK-NAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
              S    +      A++A    K     H   +        ++   ++E L  A+E   
Sbjct: 134 GPRSLKDLNVAFDSEAKIACDTIKKDASRHWAIYTQELGLRHKMQNYVREYLDQALEKGF 193

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + L   PIIR +  ++VG EAL +W+ P++G IS + F+ + EE  +I  ++ ++L  +A
Sbjct: 194 IRLYLQPIIRTLTGKLVGAEALARWESPQYGMISPAIFIPVLEEAHLIHKLDAYILNAVA 253

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           +      D   +P + + +N++  D +  +     +A+  K       +++  +E+ ++ 
Sbjct: 254 KMTRQGLD-NGLPALPVSVNLSRLDFILQDPFATTEAIREKYDLPLGLLQVEVTENALVD 312

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL 899
             E     + R ++ G  + LDDFG+  S L+ L    FDT+KF+   +   TEK   IL
Sbjct: 313 KMEPVLDGIRRFQQGGYPVLLDDFGSGYSSLNVLKDYDFDTIKFDMKFLHPFTEKSRKIL 372

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL-LKERFP 958
           +S++ M K++    +A+    +     L  +GC+ IQ  +   P+      +  L +   
Sbjct: 373 KSLVSMVKDLHIHTLAEGAETKEQCDFLREIGCEKIQGYYYGKPIPCEDFHQYALDQGLQ 432

Query: 959 LVKNT 963
           +    
Sbjct: 433 VETRA 437



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 17/174 (9%)

Query: 523  KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
            +  ++ I   +  D LTG+ NR+  LD L  +        +        D++  K+ ND 
Sbjct: 1292 RNLMQRIDRLSKVDPLTGVMNRRGLLDSLKDL-------PSGMYAFFFGDLNGLKETNDK 1344

Query: 583  LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            LG   GD ++ S            + +  + G+ F +I  +  +  + +     +     
Sbjct: 1345 LGHDAGDRLIQSAASVFV-HSCPTNAVFHMGGDEFLMI-QAVQDEQEASAINDRLHDRF- 1401

Query: 643  MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
                       ++ S+GF+      I    +L  A+  MY  K          +
Sbjct: 1402 -------HTAGISISLGFSMAALPAINIDAVLAEADCHMYKEKVEHHKTRHQHQ 1448



 Score = 42.6 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 86/283 (30%), Gaps = 16/283 (5%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTILDSFV 472
           +       D +              G +   + G  +++    +   D +    +  +  
Sbjct: 723 ASIWHVLMDDLGIEFFWKDRQHRFRGASRAFLKGRGVKDVAEILGKTDAELGWLLHTTHA 782

Query: 473 GY------RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY---IGIANDITEQK 523
                   + G  Q + +   +       I         +G ++     I    D  E++
Sbjct: 783 QETEEKVMQTGEPQLDVQEYLSIGHLIQEIRTFEYPIRESGQVVGVFIRINSLEDAPERR 842

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K     L     D  TG+ +    L       D      +    ++ +D+ +Y  I    
Sbjct: 843 K---QDLSLGLIDEETGLLSYSGMLMDGLQYADEFRLHGDDYTALL-LDVPEYDAIGMKY 898

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A    +L  +   + + +     LAR+    F I+  +  +  ++    + + + I  
Sbjct: 899 GKAFRQHLLQEIVALVRQAIPTACSLARIGNCCFLILAKAAQDV-RLQQAILNLTQKIHA 957

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
              +   + T+       +  S   +   +L+     ++ A+ 
Sbjct: 958 IEKVDGNDCTLFLH-HAQAHGSEVRSIDSLLQLLVKRLHRAEE 999



 Score = 42.2 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI-LGLASGSM 445
           + ++ A            +R    V+ + D +W   +  + V     + +I +G    ++
Sbjct: 550 LYNISAEEALDDANAHRFDRLLRNVVLTYDAIWYLSLDENLVEIIETLTSIRVGTQFHNI 609

Query: 446 HGPIRNWLPY-IHINDRDNFRTI------LDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +R +  + +H +DR+ F          +      +  +   FR+  AD ++ WM   
Sbjct: 610 ASALRQFAGHYVHPSDRERFLAFTDPKTFYERAASNPQSFISAPFRILLADGRYGWMYFT 669

Query: 499 IRPMS 503
              + 
Sbjct: 670 SMALV 674


>gi|258627455|ref|ZP_05722236.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580261|gb|EEW05229.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 819

 Score =  278 bits (711), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/657 (16%), Positives = 215/657 (32%), Gaps = 40/657 (6%)

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--LVGGLVLIVIL 381
                  +   +  +  +P      +          K+  N ++  A  LV  +   V  
Sbjct: 43  LVGDTRSIHKPDEFLEYLPLTQGEQVLQFLSTATTQKQTVNSLLLSAEKLVALVAFAVEE 102

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +I+  +                          V   D     +          G  
Sbjct: 103 VNSQMIRGSITPLLIFHSGMESAFAFDALFDNDHHGVVITDDKTRILACNRYFEQQTGYQ 162

Query: 442 SGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              + G   +      H      +  +         G        + A  +  W      
Sbjct: 163 QSELLGLKTSMFNSGKHSQ--HFYIDMWRQLQEQ--GWWNGTILSQRASGE-IWPQDLAV 217

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN--LTGIPNRQSFLDRLTTILDLS 558
              N   D   YIG   D+   +     I   A  D   LT +P    F ++L +    S
Sbjct: 218 KRLNPQKDQTFYIGFTTDL--AQHLERVIDKQAG-DVELLTQLPTLAKFSEQLKSQTTSS 274

Query: 559 ATDDNLRPTV---MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
                    +      D   Y +I  + G    +  +                L +L   
Sbjct: 275 TATTCFVIAIQPQFSSD-KHYAQIRQLAGCLAQNRQVKLCA-----YHGEGIFLCQLDAE 328

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA---SIGFASWTSSKITSSE 672
                  +   +  +      +R+  A       + I        +G +           
Sbjct: 329 -------NVAGNQSLNGLQRTLRQFFAELHQCGGQAIHQAIAKGRLGVSVLGGDTDRLDR 381

Query: 673 MLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++ +A  AM  +HA      +     +      R  +++ +   +EN ++ + Y PI+  
Sbjct: 382 LVPHALQAMLEHHAGETRHINFYDRAIHQQIERRKTLEKWVQKWIENEDVEVFYQPIVDG 441

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               +V  EAL ++  P+  + S+ E + IAEEL +I  ++  +  +   D+   +    
Sbjct: 442 QTWSVVKFEALCRFHAPEVLHASTQELITIAEELGLIDQLDALVGRKALNDLSKIQALFG 501

Query: 791 MPPIFILINIASKD-LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              I I  N +    L   ++     ALI++       + +  +ES    +      +L 
Sbjct: 502 HH-IGITFNRSLNSGLNAEQILLNASALIAEHPEQAKNVTVELTESAYFNSQFHGCRILQ 560

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            LR+ G+++ +DDFGT  S  SYL    FD +K +   ++G     +R AI++ +  +A 
Sbjct: 561 TLRESGVTIAIDDFGTGFSSFSYLTECQFDYLKIDREFISGIEAGSRRYAIVKMMTDLAH 620

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL--KERFPLVKN 962
            +   ++A+ +  E ++  L  +G D +Q    A PL  + ++  L  ++ F L   
Sbjct: 621 TLGVKVVAEGVETEYEVHVLKSLGVDLLQGFFFAKPLPMSQLIHALDYRKNFRLTTR 677


>gi|15804978|ref|NP_288575.1| putative sensor protein [Escherichia coli O157:H7 EDL933]
          Length = 1105

 Score =  278 bits (711), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFLQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPIRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|254459829|ref|ZP_05073245.1| EAL domain protein [Rhodobacterales bacterium HTCC2083]
 gi|206676418|gb|EDZ40905.1| EAL domain protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 510

 Score =  278 bits (711), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 169/432 (39%), Gaps = 26/432 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLS--ATDDNLRPTVMVIDIDKYKKINDVLG----IAVGD 589
           D LT      +  ++L T ++    +   + +  +  I+ID  K +   LG      + +
Sbjct: 73  DGLT------AAQEQLETCINDMLFSARSDEQFALFCIEIDDAKDVARRLGSAQLHEIQN 126

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSIAMPINL 647
            + +     +       D++ +     + I +    N         A   +  +  P+  
Sbjct: 127 RLQLRYANCLRS----KDVVFQSGPLHWTIAITPGKNLTLEVAIKQADRFQAVLDDPLFF 182

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
            +    +T+  GF        ++  +L  +  A+  A   G + V +F  ++ R      
Sbjct: 183 EDDRFYLTSCTGFTLAQKPFKSAHTLLTQSHSALAEAFLNGPDSVRAFDSTTRRKPPQKA 242

Query: 708 K---EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
                DL   ++ +       P I      I G EAL +W       +S +  +   E  
Sbjct: 243 SPNLADLNGDIDTNLFAWFQ-PQISTDTGHISGFEALARWRDNAGNWLSPATILPALENA 301

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
             ++ +   +L +    +  W ++       + +N +  DL +  L E +   + +    
Sbjct: 302 GQMERLTNSILTQSLTSLKKWDERGLNID-TVGVNFSESDLANPRLFEKIAWDLDRFGIE 360

Query: 825 PSRIKLSFSESVVMGNPERSR-LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            +R+ +   ESV+ G  +      + RL ++G  + LDDFGT  S +S L  +P   +K 
Sbjct: 361 ANRLCIEVLESVIAGEADDMIVRNVTRLSELGCKIDLDDFGTGHSSISTLRRLPVHRLKI 420

Query: 884 NGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           + S +       ++  ++ +I+ MA+ ++ T +A+ +    +   L ++GC Y+Q   +A
Sbjct: 421 DRSFVAKADFDAEQQKMVATILMMAERLDLTCLAEGVETLGEQSILAQLGCRYVQGFGIA 480

Query: 942 SPLGFNSILKLL 953
            P+ F      +
Sbjct: 481 KPMPFEQTEDWI 492


>gi|221068775|ref|ZP_03544880.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
 gi|220713798|gb|EED69166.1| diguanylate cyclase/phosphodiesterase [Comamonas testosteroni KF-1]
          Length = 593

 Score =  278 bits (711), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/440 (22%), Positives = 198/440 (45%), Gaps = 16/440 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                +F D LT +PNR+  LDRL+  +  S      R  ++ ID++         G + 
Sbjct: 149 EAESLSFFDVLTNLPNRRLLLDRLSQAMIQSERT-GWRGALLTIDMEPVAGSPASTGDSQ 207

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIA 642
              +  ++ +R+   ++  D +ARL    F I++   +  ++     +      +++S+ 
Sbjct: 208 A-GLAQNIAQRLLGCVRSCDTVARLDAAHFVIMVSDLSPDIEMSTVLVERLGERLQESLN 266

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
               L  +   + A+IG   +     +++E+L+ AE+AMY  +      +  F       
Sbjct: 267 GSYPLGNKSAMLEANIGATLFGPHSRSATELLQQAEIAMYRLRDEEARGLHFFSPEQRIL 326

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +DR  ++++L  A+   +  L Y         ++ GLEAL++W HP+ G +  S F+ +
Sbjct: 327 ANDRQHLEQELREALRLGQFELHYQAQYS-AGGDVNGLEALLRWRHPRRGLVPPSIFLSV 385

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  + ++     +  W+    +  + I +NI++K L   +L E +Q +IS+
Sbjct: 386 AEETDIIVPLGRWSIQAACEQLARWKADPQLGKLPICVNISAKQLRQADLAEQLQDIISQ 445

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY--LGYIPF 878
           T   P+ + L  S   +  +       L RLR +G+ L+LDDFG   S      L  +P 
Sbjct: 446 TGADPALLLLELSTQALSPSHADIVPTLTRLRTMGLRLSLDDFGD--SSHMQQALQQLPL 503

Query: 879 DTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           + +K + SL+          A +++ I +A   + TI+   +        L + GC++  
Sbjct: 504 NQLKLSHSLVQRLGPNNAAEAAVQAAIALAARHQMTIVGAGVETLEQRALLAQYGCEHFM 563

Query: 937 DSHVASPLGFNSILKLLKER 956
              ++ P     +  LL+ +
Sbjct: 564 GYLLSPPAPVGQLRSLLQRQ 583


>gi|300940252|ref|ZP_07154850.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 21-1]
 gi|300454948|gb|EFK18441.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 21-1]
          Length = 747

 Score =  278 bits (711), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I +    +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITELDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 DNDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVFSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|315615747|gb|EFU96379.1| EAL domain protein [Escherichia coli 3431]
          Length = 747

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|254458596|ref|ZP_05072021.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207084904|gb|EDZ62191.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 438

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 172/415 (41%), Gaps = 26/415 (6%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D++T +PN       L          +    T+++ ++D ++ IN+  G  VGD V+ 
Sbjct: 41  FTDHMTNLPNVYQLRRDLE---------NQEEFTLIIFNVDNFRTINNFYGCMVGDYVIE 91

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L +     L+      RL+G+ F  ++  +     I +  + + + +   I    + I 
Sbjct: 92  ELGQYFKHNLQNHKT-YRLTGDEFAFVIAKKMFFYDIKEHLVNLCEEMKDFIV---KYID 147

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRVSSFRSDRVMIKED 710
               + F   +S+   +  +     +A+ HAK  G N              + ++ + E 
Sbjct: 148 SNIYVDFTLASSASKDNYNIFSKVSMALRHAKDTGSNFWIYEDTMNFEQDYAIKLQLSET 207

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  AV N  +   Y  I+     +I   E L +        +S   F+ IA+++     +
Sbjct: 208 VREAVGNYRIIPYYQAIVDTKTSKIQKYECLARLVDINGKIVSPLLFIPIAKKIKYYSMV 267

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++  ++  +   +         IN++ +D++  ++ + +   +  +  S  ++  
Sbjct: 268 TKIIIDKSFKNFETLDSEF-------SINLSIEDIVKKDMFDFIMDKLKNSNIS-DKVTF 319

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              ES  + + E+    +  +R+ G  + +DDFG+  S  SYL  I  D +K +GSL+  
Sbjct: 320 EILESDAIEDFEKVDRFIKEVRRYGAKIAIDDFGSGYSNFSYLTKINADYIKIDGSLVKN 379

Query: 891 STEKRIAI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +   +   + SI+  AK +    IA+ +      +++  +  DY Q  ++  P
Sbjct: 380 IDKDNNSFIVVESIVQFAKKLGIKTIAEYVCSSAVFEKVKELKIDYSQGFYIDEP 434


>gi|170682075|ref|YP_001744687.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           SMS-3-5]
 gi|170519793|gb|ACB17971.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           SMS-3-5]
          Length = 747

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I +    +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITELDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVFSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|34556574|ref|NP_906389.1| GGDEF family protein [Wolinella succinogenes DSM 1740]
 gi|34482288|emb|CAE09289.1| GGDEF FAMILY PROTEIN [Wolinella succinogenes]
          Length = 743

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 168/428 (39%), Gaps = 31/428 (7%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +   E ++  +  D+LT +PNR +   RL          +     +++++ID ++ +ND 
Sbjct: 334 QNLYERLVEESRTDSLTRLPNRHAI--RLEM-------QNQSYAHLLLLNIDSFRTLNDF 384

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDIL--ARLSGNRFGIILISENNSLKIADFAIAMRKS 640
            G  VGDD+L+   +R+  L +    L   RL  + F ++        K+          
Sbjct: 385 YGSDVGDDLLIEFAKRLKMLEQKHTGLKAYRLHADEFALLSSESMEIKKLLTLTHRFMTQ 444

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG---GNHVESFRV 697
                N    EI ++ SIG A  +       + L+ A++A+  AK        +      
Sbjct: 445 GPYRENRHRIEIMLSLSIGAAKASP------QALEQADIALNLAKSSNDSYKLYAPELEN 498

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + + + L  A+    L   + PI+      I   E L +        +S   F
Sbjct: 499 HHKLRQHITLTKRLKEALREDRLIPYFQPIVNSK-GHIQKYECLARIIESNGEVLSPYLF 557

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IA++  +   I   M+++  +                 IN++ +D+   +  + +   
Sbjct: 558 LQIAKKSKLYPKITQKMVQKSFK-------AFEKSDHDFSINLSFEDIAHTKTRDFILKS 610

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +        ++     E+  + N +     +  +++ G  + +DDFG+  S   +L  + 
Sbjct: 611 LQDYP-KAKQVIFEIVETENIHNYKLLEDFIKEIKRFGARVAIDDFGSGYSNFLHLAKLR 669

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +GSL+ G  +      I+ SI+ + + +    IA+ I  E    + + MG D+ 
Sbjct: 670 VDFIKIDGSLIQGLGQDSEVEIIVHSIVEICQRLGIQTIAEFIDNEPLSHKASEMGIDFQ 729

Query: 936 QDSHVASP 943
           Q  +   P
Sbjct: 730 QGFYFYEP 737


>gi|306814809|ref|ZP_07448971.1| putative sensor protein [Escherichia coli NC101]
 gi|305852203|gb|EFM52655.1| putative sensor protein [Escherichia coli NC101]
          Length = 1105

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAISLDEQWRMIKENQLMMIAHGVASPRITEVRNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     E  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEFIDEQTFSRSFSEPALSHALDRRVFHDFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  + L   G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVLSQMGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + I 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVID 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|260428195|ref|ZP_05782174.1| EAL domain protein [Citreicella sp. SE45]
 gi|260422687|gb|EEX15938.1| EAL domain protein [Citreicella sp. SE45]
          Length = 513

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 179/417 (42%), Gaps = 11/417 (2%)

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           D    +L  +    NL     +++ +    I   +G     D+   L RR+  L++  D 
Sbjct: 84  DLADQMLARAG-SSNLATACFMLEAEGLDSIRRRVGDDTVQDLRNMLLRRLRALMRRGDC 142

Query: 609 LARLSGNRFGIILIS--ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT-- 664
            AR+  +R+ ++L      +   +   A  M++++  P+        ++ +IGF   +  
Sbjct: 143 AARIGDSRYLVLLSPSLRLDLEALLTLADRMQRALEEPVESDVGTHYLSVAIGFCGSSRL 202

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYL 722
                 ++ ++ A+ A+  A     + + ++  S     R    +  ++  A+   ++  
Sbjct: 203 PGTPNGAQFVEAAQTALAEALSNSPSAIRAWSDSMRAERRARKSLLAEVERALAKGQIQP 262

Query: 723 VYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDI 782
            + P +      I G+EAL +W HP+ G +   EF+   EE   +  ++  ML+     +
Sbjct: 263 WFQPQLCTSTGRISGVEALARWLHPERGIVPPMEFLNALEESGQLDRLSEVMLQHSLTAL 322

Query: 783 ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             W       P  + +N +  +L   +L E ++  + +     SR+ +   E+V+  +PE
Sbjct: 323 RGWDATGIEIP-RVSVNFSDVELRSPQLVERIKWELDRFNLPASRLGVEVLETVIAESPE 381

Query: 843 -RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAIL 899
                 +  L ++G  + LDDFGT  + ++ L       +K + S +T     E++  +L
Sbjct: 382 GVVAKNITGLSRLGCQVDLDDFGTGHASITALRRFTVHRLKIDRSFVTRVDRDEEQRRML 441

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +++ +A  +    +A+ +    +   L ++GCD++Q   +A P+  + +    +  
Sbjct: 442 AAVLGLADRLGLETVAEGVESVSEHALLAQLGCDHVQGFGIARPMPPDQLATWARAH 498


>gi|311695408|gb|ADP98281.1| PAS sensor diguanylate cyclase/phosphodiesterase [marine bacterium
           HP15]
          Length = 694

 Score =  277 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/572 (15%), Positives = 206/572 (36%), Gaps = 16/572 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
               +            +    +R  L +  S D +   +     +         LG   
Sbjct: 123 ELAALDERRRRRVLESHLREAEQRCQLLLESSKDAIAYIN-DGMHIYANQSYMEFLGYDD 181

Query: 443 -GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +       L  +    ++ ++  + SF       +      R +D+    + + +  
Sbjct: 182 IDDLICVP--VLDTLTPESQEKYKEFMKSFAEKGEDGMTMNCTARRSDDHELNVTMSVSA 239

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
            +  +G+    I +  + ++  +  E +   + QD LTG+ NRQ  +D L   +  +   
Sbjct: 240 -ATYDGEECTQIVLQPEHSDA-ELEEKLRQISSQDLLTGLYNRQYLMDALAEAIANAGK- 296

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            N    +  I +D +  +   +GI+  D +L  L   + E       LARLS + F ++ 
Sbjct: 297 KNETGALAYIALDNFMSMKGQVGISGADLLLGDLANLLKEQAGDDLALARLSDDAFSLLS 356

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
              + S          +       ++  R + +T SIG A+ T +   + E++  A  A 
Sbjct: 357 QPCDESTMAGHAERIRKAVEDHLFDINGRTVQLTVSIGVAAITENSPKAEELMARAHTAS 416

Query: 682 YHAKH-----RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
              +       G   V          D+    E +  A+E +   L++ PII L  E   
Sbjct: 417 AEVRKLEGHAEGNGVVVYNPADFETLDQSNSVEAIQKALEENRFRLLFQPIINLRGEGEE 476

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             EA ++        +S  +F+           I+ +++ +  + + S R + +   +F+
Sbjct: 477 HYEAFVRMLDKDDEEVSPYDFLPPTGPSDTAIKIDRWVILQTIKQLSSHRSRGHDTRLFL 536

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
             N+ ++ L D      +   +         +     E       ++++     + ++  
Sbjct: 537 --NVTAETLQDKTFTPWLSVALKAARLPGDSLIFQIREGDANNYMKQAKDFTKAVHELHC 594

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            +++  FG   +  + L +I  D VK +GS       +++    ++ ++   ++     I
Sbjct: 595 KVSISQFGCALNPFNTLKHIDTDYVKIDGSFTEEIQKSDEAKEQVKEMVKSLQSSGKLTI 654

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              +     +  L + G +YIQ  ++ +P+  
Sbjct: 655 IPLVENAGVLATLWQAGVNYIQGYYLQAPVPE 686


>gi|281179554|dbj|BAI55884.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 747

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLHIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNVP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|117676249|ref|YP_863825.1| diguanylate phosphodiesterase [Shewanella sp. ANA-3]
 gi|117615073|gb|ABK50526.1| diguanylate phosphodiesterase [Shewanella sp. ANA-3]
          Length = 266

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 3/246 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L   +   E    Y P+  +  +   G E LI+W HP  G I S  F+ +AE+  +I 
Sbjct: 16  NALADGLNKGEFVPFYQPLWDVQHQCWEGAETLIRWQHPTEGLIQSDTFIPVAEQSGLIL 75

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  F+L  + + ++ WR +     I I +N+++  +   +  E +  ++  T      +
Sbjct: 76  ELGAFVLRAVCQQMMHWRQRGLPEGI-IAVNVSALQIHQPDFVEDLARILRDTGLPAPAL 134

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E++ + +       L R + +GI L++DDFGT  S L+ L   P   +K + + +
Sbjct: 135 ELELTETLALEDTPILIENLHRCQALGIRLSIDDFGTGSSSLARLQCCPVTRLKIDKTFV 194

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T  T   K  AI  S+I +  N+  +I+A+ +      + L ++GCD +Q   +A P   
Sbjct: 195 THMTTEPKDRAITESVITLGHNLNLSIVAEGVETATQQQLLEKLGCDVLQGYRLARPADA 254

Query: 947 NSILKL 952
            +   L
Sbjct: 255 ETTEAL 260


>gi|262171282|ref|ZP_06038960.1| hypothetical protein VII_002098 [Vibrio mimicus MB-451]
 gi|261892358|gb|EEY38344.1| hypothetical protein VII_002098 [Vibrio mimicus MB-451]
          Length = 819

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/657 (16%), Positives = 211/657 (32%), Gaps = 40/657 (6%)

Query: 324 YFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--LVGGLVLIVIL 381
                  +   +  +  +P      +      +   K+  N ++  A  LV  +   V  
Sbjct: 43  LVGDTRSIHKPDEFLKYLPLTQGEQVLQFLSTVTTQKQTVNSLLLSAEKLVALVAFAVEE 102

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
           +   +I+  +                          V   D     +          G  
Sbjct: 103 VNSQMIRGSITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQ 162

Query: 442 SGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
              + G   +      H      +  +         G        + A  +  W      
Sbjct: 163 QSELLGLKTSMFNSGKHSQ--HFYIDMWRQLQEQ--GWWNGTILSQRASGE-IWPQDLAV 217

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN--LTGIPNRQSFLDRLTTILDLS 558
              N   D   YIG   D+         I   A  D   LT +P    F ++L +    S
Sbjct: 218 KRLNPQKDQTFYIGFTTDL--AHHLERVIDKQAG-DVELLTQLPTLAKFSEQLKSQTTSS 274

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                               I            +  L   + +       L    G    
Sbjct: 275 TATTCFVIA-----------IQPQFSSDKHYAQIRQLAGCLAQ--NRQVKLCAYHGEGIF 321

Query: 619 II---LISENNSLKIADFAIAMRKSIAMPINLLEREITVTA---SIGFASWTSSKITSSE 672
           +      +   +  +      +R+  A       + I        +G +           
Sbjct: 322 LCQLDAENVAGNQSLNGLQRTLRQFFAELHQCGGQAIHQAIAKGRLGVSVLGGDTDRLDR 381

Query: 673 MLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ++ +A  AM  +HA      +     +      R  +++ +   +EN ++ + Y PI+  
Sbjct: 382 LVPHALQAMLEHHAGETRHINFYDRAIHQQIERRKTLEKWVQKWIENEDVEVFYQPIVDG 441

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               +V  EAL ++  P+  + S+ E + IAEEL +I  ++  +  +   D+   +    
Sbjct: 442 QTWSVVKFEALCRFHAPEVLHASTQELITIAEELGLIDQLDALVGRKALNDLSKIQALFG 501

Query: 791 MPPIFILINIASKD-LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
              I I  N +    L   ++     ALI++       + +  +ES    +      +L 
Sbjct: 502 HH-IGITFNRSLNSGLNAEQILLNASALIAEHPEQAKNVTVELTESAYFNSQFHGCRILQ 560

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAK 907
            LR+ G+++ +DDFGT  S  SYL    FD +K +   ++G     +R AI++ +  +A 
Sbjct: 561 TLRESGVTIAIDDFGTGFSSFSYLTECQFDYLKIDREFISGIEAGSRRYAIVKMMTDLAH 620

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL--KERFPLVKN 962
            +   ++A+ +  E ++  L  +G D +Q    A PL  + ++  L  ++ F L   
Sbjct: 621 TLGVKVVAEGVETEYEVHVLKSLGVDLLQGFFFAKPLPMSQLIHALDYRKNFRLTTR 677


>gi|16130428|ref|NP_416998.1| inner membrane protein, predicted c-di-GMP dual activity enzyme
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109309|ref|AP_003089.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|170082113|ref|YP_001731433.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|238901668|ref|YP_002927464.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|256021811|ref|ZP_05435676.1| putative inner membrane protein [Escherichia sp. 4_1_40B]
 gi|300951793|ref|ZP_07165608.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 116-1]
 gi|300958868|ref|ZP_07170975.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 175-1]
 gi|301023896|ref|ZP_07187625.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 196-1]
 gi|307139137|ref|ZP_07498493.1| putative inner membrane protein [Escherichia coli H736]
 gi|331643121|ref|ZP_08344256.1| inner membrane protein YfgF [Escherichia coli H736]
 gi|13634053|sp|P77172|YFGF_ECOLI RecName: Full=Cyclic di-GMP phosphodiesterase YfgF
 gi|1788849|gb|AAC75556.1| inner membrane protein, predicted c-di-GMP dual activity enzyme
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1805566|dbj|BAA16393.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|169889948|gb|ACB03655.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|238862516|gb|ACR64514.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|260448418|gb|ACX38840.1| diguanylate cyclase/phosphodiesterase [Escherichia coli DH1]
 gi|299880615|gb|EFI88826.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 196-1]
 gi|300314496|gb|EFJ64280.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 175-1]
 gi|300448990|gb|EFK12610.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 116-1]
 gi|315137126|dbj|BAJ44285.1| putative inner membrane protein [Escherichia coli DH1]
 gi|331039919|gb|EGI12139.1| inner membrane protein YfgF [Escherichia coli H736]
          Length = 747

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|331647719|ref|ZP_08348811.1| putative sensor-type protein [Escherichia coli M605]
 gi|330911904|gb|EGH40414.1| hypothetical protein ECAA86_02274 [Escherichia coli AA86]
 gi|331043443|gb|EGI15581.1| putative sensor-type protein [Escherichia coli M605]
          Length = 1105

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 202/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTIYEPQQVAAHSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +  L+  +  SP  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIELLENSPLSPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 KIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|170682376|ref|YP_001743072.1| putative sensor protein [Escherichia coli SMS-3-5]
 gi|170520094|gb|ACB18272.1| sensory box-containing diguanylate cyclase [Escherichia coli SMS-3-5]
          Length = 1105

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      ++     + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTVYEPQQAATNSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQTAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|218458426|ref|ZP_03498517.1| putative kinase/esterase protein [Rhizobium etli Kim 5]
          Length = 247

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 108/215 (50%), Gaps = 7/215 (3%)

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W H + G ++ + F+ +AEE  +I A+  ++L    +    W +       F+
Sbjct: 17  GAEALVRWRHSQRGLLTPASFIPVAEEGGLIDALGFWVLREACKAACKWPE-----DTFV 71

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L      E + A++ +T   PSR++L  +ES ++ +      +L  LR  GI
Sbjct: 72  AVNVSPAQLRRPNFAEEVFAVLEETGLPPSRLELELTESSLIEDNSDVYTVLKSLRSRGI 131

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            ++LDDFGT  S LS+L     D +K + S ++         AI+ +I+ +++N+  +  
Sbjct: 132 QISLDDFGTGFSCLSHLVRFDIDRIKIDRSFVSQLGAKANGAAIIGAIVTLSRNLGISTT 191

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           A+ +  E     LT +GC  +Q    + P+    +
Sbjct: 192 AEGVETEYQRDFLTALGCTDLQGYFFSKPVPLREL 226


>gi|320668095|gb|EFX34974.1| putative diguanylate cyclase [Escherichia coli O157:H7 str. LSU-61]
          Length = 1105

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFLQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|313682749|ref|YP_004060487.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155609|gb|ADR34287.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfuricurvum kujiense DSM
           16994]
          Length = 574

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 172/436 (39%), Gaps = 31/436 (7%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           + +L     D ++G+  R  F + L ++            ++ +  I+ +K +ND  G  
Sbjct: 162 QKLLQLYTIDRISGLYTRGKFEEDLLSL---------SNVSLALFKINDFKSLNDFYGYE 212

Query: 587 VGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILI-SENNSLKIADFAIAMRKSIAM 643
           +GD ++      + E         L R+SG+ F +++    ++  K A     + +    
Sbjct: 213 IGDSIIRHSADFLRERFSILDNANLYRISGSHFALLIPMPSDDLEKFAILTNQIFE--NN 270

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            I +    I +  +I       +       L   ++A+  A+  G   V        +  
Sbjct: 271 QIKIESEFIHLQMAIAIVPHNEAVS-----LSKGDIALREAQRTGKVVVYHQDPIKDQLR 325

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
              +K  E++  A+  +     Y PII  + ++I+  EAL +   P    I+   F+ IA
Sbjct: 326 SEKLKYKEEIKRALRENRFVPFYQPIIDNISKKIIKYEALARLILPDGKIITPEHFLNIA 385

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E      I+  ++++   D              + IN++  D+ ++   + + A I   
Sbjct: 386 KETKTYGQISHMVIKKAMDDFK-------DSECTVSINLSIDDIKNSFTQKFLFAQIEAF 438

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P+R+     ES  + + E   + L RL+  G  + +DDFG+  S   +L  +  D +
Sbjct: 439 P-EPNRLVFELLESEGIDSYEELGIFLNRLKHYGCQIAIDDFGSGYSNFEHLARLNIDYI 497

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +GSL+           I+  I   AK +E   IA+ +        +  M  +  Q   
Sbjct: 498 KIDGSLIMDIESGVLSQTIVELITSFAKKMEIKTIAEFVSSRSIESMVDSMEVNESQGYL 557

Query: 940 VASPLGFNSILKLLKE 955
              P+ ++  ++ ++ 
Sbjct: 558 FGQPIPYDLSMRFIQS 573


>gi|320640846|gb|EFX10334.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           O157:H7 str. G5101]
          Length = 732

 Score =  277 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 179/441 (40%), Gaps = 20/441 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRTVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLG 945
           + +  +G DY+Q   +  P  
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP 732


>gi|323977319|gb|EGB72405.1| MASE1 protein [Escherichia coli TW10509]
          Length = 747

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 DNDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|312967301|ref|ZP_07781517.1| uncharacterized protein yegE [Escherichia coli 2362-75]
 gi|168986451|dbj|BAG11989.1| predicted diguanylate cyclase [Escherichia coli O55:H6]
 gi|312288109|gb|EFR16013.1| uncharacterized protein yegE [Escherichia coli 2362-75]
          Length = 1105

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 201/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIARYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + +V+      + E        ++    
Sbjct: 840  VTIYEPQQVAAHSERAVMSLDEQWRMIKENQLMMIVHGIASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ + E       +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 90.0 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAAGPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 88.1 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAAGPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|194437599|ref|ZP_03069695.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           101-1]
 gi|253772605|ref|YP_003035436.1| diguanylate cyclase/phosphodiesterase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162477|ref|YP_003045585.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|300930142|ref|ZP_07145563.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 187-1]
 gi|194423405|gb|EDX39396.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           101-1]
 gi|242378101|emb|CAQ32874.1| cyclic di-GMP phosphodiesterase [Escherichia coli BL21(DE3)]
 gi|253323649|gb|ACT28251.1| diguanylate cyclase/phosphodiesterase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974378|gb|ACT40049.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253978545|gb|ACT44215.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|300461948|gb|EFK25441.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 187-1]
          Length = 747

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|258621848|ref|ZP_05716878.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585786|gb|EEW10505.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 819

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 189/562 (33%), Gaps = 38/562 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H      +  +        
Sbjct: 138 GVVITDDKTRILACNRYFEQQTGYQQSELLGLKTSMFNSGKHSQ--HFYIDMWRQLQEQ- 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G        + A  +  W         N   D   YIG   D+         I   A  
Sbjct: 195 -GWWNGTILSQRASGE-IWPQDLAVKRLNPQKDQTFYIGFTTDL--AHHLERVIDKQAG- 249

Query: 536 DN--LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           D   LT +P    F ++L +    S                    I            + 
Sbjct: 250 DVELLTQLPTLAKFSEQLKSQTTSSTATTCFVIA-----------IQPQFSSDKHYAQIR 298

Query: 594 SLTRRIGELLKFPDILARLSGNRFGII---LISENNSLKIADFAIAMRKSIAMPINLLER 650
            L   + +       L    G    +      +   +  +      +R+  A       +
Sbjct: 299 QLAGCLAQ--NRQVKLCAYHGEGIFLCQLDAENVAGNQSLNGLQRTLRQFFAELHQCGGQ 356

Query: 651 EITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRV 705
            I        +G +           ++ +A  AM  +HA      +     +      R 
Sbjct: 357 AIHQAIAKGRLGVSVLGGDTDRLDRLVPHALQAMLEHHAGETRHINFYDRAIHQQIERRK 416

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ +   +EN ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL 
Sbjct: 417 TLEKWVQKWIENEDVEVFYQPIVDGQTWSVVKFEALCRFHAPEVLHASTQELITIAEELG 476

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQALISKTLYS 824
           +I  ++  +  +   D+   +       I I  N +    L   ++     ALI++    
Sbjct: 477 LIDQLDALVGRKALNDLSKIQALFGHH-IGITFNRSLNSGLNAEQILLNASALIAEHPEQ 535

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +ES    +      +L  LR+ G+++ +DDFGT  S  SYL    FD +K +
Sbjct: 536 AKNVTVELTESAYFNSQFHGCRILQTLRESGVTIAIDDFGTGFSSFSYLTECQFDYLKID 595

Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              ++G     +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A 
Sbjct: 596 REFISGIEAGSRRYAIVKMMTDLAHTLGVKVVAEGVETEYEVHVLKSLGVDLLQGFFFAK 655

Query: 943 PLGFNSILKLL--KERFPLVKN 962
           PL  + ++  L  ++ F L   
Sbjct: 656 PLPMSQLIHALDYRKNFRLTAR 677


>gi|293415356|ref|ZP_06657999.1| yegE protein [Escherichia coli B185]
 gi|291433004|gb|EFF05983.1| yegE protein [Escherichia coli B185]
          Length = 1105

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             I I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKG---ISIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      +  + E       +LR  G  + L   G   
Sbjct: 957  ATLVNDLLEQLENSPLPPRLLHLIIPAEAIFDHAESV----QKLRLGGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + +     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSVKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGEVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMLELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|300784779|ref|YP_003765070.1| diguanylate cyclase/phosphodiesterase [Amycolatopsis mediterranei
           U32]
 gi|299794293|gb|ADJ44668.1| diguanylate cyclase/phosphodiesterase [Amycolatopsis mediterranei
           U32]
          Length = 605

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 117/566 (20%), Positives = 220/566 (38%), Gaps = 25/566 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R +     S   +   D     V     +  +LG +   + G     L     +D     
Sbjct: 47  RFTALYAASPMGIALADPDGGIVEANLALGQLLGCSPDRLRGRHITDLGST-EHDVSRLE 105

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
             L      R  R Q    +   ++   W  + +  +       +  + + +D  E    
Sbjct: 106 AGLAQVRTGR-DRYQERMLLDHTEDGQLWTDVTLARLPGDRPGSIYPVLMVSDANELHLL 164

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +L     D LTG+PN  SF  +L   L   A DD     ++ +D+D +K IND LG 
Sbjct: 165 RERLLHQNVHDPLTGLPNASSFTTKLEAALGAGAHDD---IALIYLDVDGFKVINDGLGA 221

Query: 586 AVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            VGD VL  +  ++  +        +ARLSG+ F ++L  E  + ++        + +  
Sbjct: 222 GVGDQVLRGVANKLSAVFTGHHDGFVARLSGDGFAVLLRGELAATEVVGLVERALEDLNE 281

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           PI L    I V+AS G     + +  ++E+L+ AE+A++ AK  G      F       D
Sbjct: 282 PIYLGGHGIGVSASAGIVVRAAVEGGAAELLRAAEIALHRAKEAGKAQWMLFDPDLDARD 341

Query: 704 R--VMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R    +   +  A+EN E  LVY P +     +E+  + A ++W+HP+ G + S EF  +
Sbjct: 342 RGRYQLGAVIAGALENGEFSLVYQPTVKLSRPDELAAVNAGLRWNHPEKGELGSDEFYPL 401

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           A+   M   +  ++L         WR         + + + ++  +D +L   ++  + K
Sbjct: 402 AQTTGMTVPLGRWLLAESLAATARWRTHLGDAAPDVCVRLPARLAIDPDLVLLVKEQLDK 461

Query: 821 TLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGT--KCSLLSYL--GY 875
                  ++L  ++   M +P       L  L  +G  L L    T    + L  +    
Sbjct: 462 HELPARALRL-CTDRDSMLDPRGEVLDSLAVLADLGAQLVL----TISGSADLELIPQHR 516

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPM---AKNIETTIIAKDIYGEIDIKELTRM 930
           +P   V  +G ++          + LR +  +   A+ +   + A+ +        L ++
Sbjct: 517 LPVRHVILSGPVVDALDTDVPAESDLRHLTQLITRARELNLRVGAEGVRTHEQAARLRQL 576

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
           G    +   VA     + + +++   
Sbjct: 577 GVIAARGPFVADSATGDEVDEMIARH 602


>gi|289642781|ref|ZP_06474919.1| diguanylate phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
 gi|289507434|gb|EFD28395.1| diguanylate phosphodiesterase [Frankia symbiont of Datisca
           glomerata]
          Length = 330

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 117/253 (46%), Gaps = 4/253 (1%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + ++ +L  A+ N E+   Y P   L    + G+E L++W HP  G  +   F+   +  
Sbjct: 7   LRLRAELRTALRNGEIEPYYQPKADLRTGRVTGMETLVRWRHPVDGIRTPDTFLPDIQAA 66

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            ++  +   +L R   D   W        + + +N+ +  ++D     G+   +S+    
Sbjct: 67  GLMPTMTRQILTRALTDCARWHAAGAR--LSVSVNVPAPVIVDPGFVPGVHEALSEAGVC 124

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           PS + +  +E  +M   ER++  L RLR +G+ ++LDD+G+    L+YL  +P D +K +
Sbjct: 125 PSALCVEITEDSLMTQRERAQHTLARLRALGVRVSLDDYGSGYCSLAYLRDLPADELKLD 184

Query: 885 GSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            + +     +     I+RS + +A  +   ++A+ +        L   GCD  Q   ++ 
Sbjct: 185 RAFLRDVERSPAAGEIVRSTLALAHTLRLRMVAEGVETAGSWALLAAWGCDEAQGYFISP 244

Query: 943 PLGFNSILKLLKE 955
           P+    +L  L++
Sbjct: 245 PMASERVLPWLRQ 257


>gi|111221392|ref|YP_712186.1| putative sensory box/GGDEF family protein [Frankia alni ACN14a]
 gi|111148924|emb|CAJ60603.1| hypothetical protein; putative Sensory box/GGDEF family protein
           [Frankia alni ACN14a]
          Length = 836

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 192/429 (44%), Gaps = 10/429 (2%)

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           + +  + I   +  D LTG+PNR + L          A  D  R  V+ ID+D +K IND
Sbjct: 382 RLRMEDEIRRRSLHDGLTGLPNRTA-LLDRLDRALRRARGDGTRIGVLFIDLDGFKTIND 440

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            LG   GD +L     R+   ++  D++ RLSG+ F ++    ++   I   A  +  ++
Sbjct: 441 TLGHQAGDHLLRLTADRLEHAVRPADVVGRLSGDEFAVLCEDVDSPAAIEAIADRVLATL 500

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P  L ER + ++AS+G A          ++L  A++AMY AK RG     +F      
Sbjct: 501 DTPCVLRERTVLLSASVGIALSEPETADGEDLLNAADIAMYAAKRRGPGRRLAFDEVMRT 560

Query: 702 SDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                I E  +L  AV   EL + Y PI  L D  + G EAL  W HP+ G +  ++F+ 
Sbjct: 561 RLMAQITENDELRRAVTADELVMRYQPIQDL-DRLMAGAEALPHWRHPRRGLVPPAQFLP 619

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQA---NMPPIFILINIASKDLLDNELCEGMQA 816
              ++ +   I+ + + R  R   +          PP  + + ++S+ L++      +  
Sbjct: 620 DPAQVGLRVPIDRWAVGRACRAAAAAWADGRPDGTPPPLLTVAVSSRCLVEARFVPELDV 679

Query: 817 LISKTLYSPS-RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           L++ T      R+ L  +E  V  +        G LR++G+ L +DD+G+  ++ S +  
Sbjct: 680 LLAATGADRRYRLCLQITEREVADDETALSAAFGELRRLGVDLCVDDYGSARTMASAMNR 739

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +PF  ++ NG+ +    S+  R A   +++  A  +    +A D+     +  L  + CD
Sbjct: 740 VPFGYIRLNGTFVDGVDSSPVRHAASGALMHFAHALGIRAMAGDVGTASQLDALRALRCD 799

Query: 934 YIQDSHVAS 942
                 +  
Sbjct: 800 LFLGPVIGP 808



 Score = 50.7 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 7/127 (5%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVT-TTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
           ER  L        V   D+   R+         +LG +   + G    W       +R  
Sbjct: 4   ERADL-FELLNLAVTVTDLRTGRLRRANAAACDLLGRSEDELVGTY--WQDVTVPEERAL 60

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           +   +     +     +   R+   D+    +++    +    G   + +    D++++ 
Sbjct: 61  WHEEIHRPGRHDPPSRRL-VRLWRPDHSTVHVLVTSATVPGPAGR--QILSQLQDVSDEI 117

Query: 524 KSLEGIL 530
            + + + 
Sbjct: 118 TANDRLR 124


>gi|194427321|ref|ZP_03059871.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           B171]
 gi|194414642|gb|EDX30914.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           B171]
          Length = 747

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMLMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|118475122|ref|YP_892853.1| diguanylate cyclase/phosphodiesterase, putative [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414348|gb|ABK82768.1| diguanylate cyclase/phosphodiesterase, putative [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 798

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/587 (14%), Positives = 214/587 (36%), Gaps = 39/587 (6%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           V++++ I        + T   ++   +   +    +  S + +   +     +   P   
Sbjct: 227 VVVLLFIIILSSTRNIYTSVKNRKNAAKINQMGDMIANSPNQILIINREGKIIDANPAFE 286

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            I G     +     ++L             I D  +  ++     EF  ++      + 
Sbjct: 287 QISGYKKSEVLNKTLSFLNT-----NLKGTNIYDDILQSKQICRYNEFISKSKKGLLIYE 341

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKS-------LEGILCNAFQDNLTGIPNRQSFL 548
            I   P  +    I   I +  DIT+++            I  +A  D LTG+ N  + +
Sbjct: 342 KIIAIPTLDEYSQISGAIIVKQDITKERLIAKELGFKTAEIRNSALTDKLTGLGNHIALM 401

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--- 605
           +++         DD  +  V+ I+++ +  +      +  D +L +++  +   ++    
Sbjct: 402 EKI---------DDKKKGIVIYINVNHFSNLRFFYKTSTVDLILTAISETLKLCIETYKM 452

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              + R+  + F I     N +  +       +      I    REI    +I       
Sbjct: 453 NSSIYRIQLDEFCIWYEGSNINKDVKHILEYFKVKNIDIITSEGREILPNINITMGVSME 512

Query: 666 SKITSSEMLKNAELAMYHA---KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYL 722
           +   ++  L  + LA + A         + ++  +        +I   +  A+  + + +
Sbjct: 513 ADTPNTNRLTQSILAHHEAISNDQNIAFYQDNNIIEQQYHKNQLISRMIQYALNENRVIV 572

Query: 723 VYHPIIRLMDEE---IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
               I  +       +   E LI+    +       EF+ +A++  +  A+   ++ +  
Sbjct: 573 ECQGIFDIRSSNKPILSSYEILIRIIDSENKIHYPGEFLGVAKQTSLYIALTKQVISKAF 632

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
             + ++ D+         IN++S D+++  + +     +S     PS + +   ES  + 
Sbjct: 633 DLLETFCDK------KFSINLSSIDMVNESVKKLFMQKLSLCS-QPSHLTVEILESEGID 685

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
           +       +  ++  G  L++DDFG+  S    +  +  D +K +GS++      E   +
Sbjct: 686 DYASINPFIESIKDHGCKLSIDDFGSGYSNYYRMLELDIDYLKIDGSIIKKLPFDENARS 745

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           ++++I+  A   +  ++A+ +     ++++   G  Y Q   +  P+
Sbjct: 746 VVQTIVEFANRQKYDVVAEFVSSNEILEQVLSYGIKYAQGFLLGKPI 792


>gi|239503733|ref|ZP_04663043.1| hypothetical protein AbauAB_15597 [Acinetobacter baumannii AB900]
          Length = 395

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 122/265 (46%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 125 CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 183

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L++  + +  W  +     + + INI++   + +  
Sbjct: 184 YIPTKEFIPAAATFGLMPEIGEWVLDQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 243

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 244 EHTVIGLVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 303

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 304 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 363

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 364 SNGCTEFQGYLWGCPMSLNDFIKQL 388


>gi|256371938|ref|YP_003109762.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008522|gb|ACU54089.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 626

 Score =  277 bits (709), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/447 (22%), Positives = 192/447 (42%), Gaps = 24/447 (5%)

Query: 505 SNGDILRYIGIANDITEQKKSLE--GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
           ++  ++R + IA D    ++  E   +   A +D LTG+PNR++F D L      +    
Sbjct: 92  ADTAVMRALAIATDALFARRERELVRLSMLATRDPLTGLPNRRAFADALQRSWARAKRTG 151

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             R TV+ +D+D +K +ND  G   GD+V+  L  R+ + ++  D++AR  G+ FG++L 
Sbjct: 152 E-RVTVIALDLDDFKHVNDTYGHRRGDEVMAELAHRLAKAVRATDVVARTGGDEFGLVLD 210

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P+  L+    + AS G AS  +  + +  +L  A+ A+Y
Sbjct: 211 PTGEEAAVEPVLARLERELQRPLATLDGG-RLLASAGIASSDALTMEADALLDAADQALY 269

Query: 683 HAKHRGGNHVESFRVS-SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
            AKH      E  R+S   R+        L     +  + +VY PII L     V  EAL
Sbjct: 270 VAKHARPVENEVLRISYWQRTGTPTTGHRLAPPHPSEGISVVYQPIIDLATGRTVRAEAL 329

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
            +         S    +  A        ++  ++  +  D+ +       P   + +N+ 
Sbjct: 330 AR-TDASSAVHSVESLLQAATRAEH-ARLHRHIVALVLGDLAAL-----GPDARVSVNVD 382

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L D  L   +   + +   +P ++++  +E  ++        ++ RLR+ G +++LD
Sbjct: 383 AGVLDDQVLTTTLLHGLDQ--LAPGQLRIEITERDIL--LTAHGDVVRRLREHGATISLD 438

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKD-- 917
           DFGT  + LS L  IP D +K + S+           A+L   + + + ++  ++ +   
Sbjct: 439 DFGTGFASLSRLLTIPVDEIKLDRSVAADRQMGSVASAVLAIAVALGRALDIDLVVEGAD 498

Query: 918 -IYGEIDIKELTRMGCDYIQDSHVASP 943
            I           +G    Q   +  P
Sbjct: 499 SIERAAQF---RAIGVPLAQGFAIGEP 522


>gi|300694212|ref|YP_003750185.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           PSI07]
 gi|299076249|emb|CBJ35563.1| putative signal transduction protein ggdef domain [Ralstonia
           solanacearum PSI07]
          Length = 490

 Score =  277 bits (709), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 2/307 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V A     + + +  +R +  + G+G   +DW +    V+     A +LG A  
Sbjct: 154 IVQVQDVTARRLALESLQASEQRLAYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGHAPD 213

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            +    ++W   +H  D       +   +       + E R+R  + Q+ W+  R R   
Sbjct: 214 ELSSDPQDWFAMVHPQDAILSLRRIYRHLRGDTDSFEVEQRLRGQEGQWVWVSARGRVTQ 273

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++ G  +R  G   D+T ++  L+     A  D LT +PN +   DRL   +  +    
Sbjct: 274 RDAYGIPVRVSGTLQDVTRRRAMLDKAHHLALHDPLTDLPNARLLRDRLFVAIQAARRAC 333

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           + +  V+ +D+D++K IND  G  VGD VL +   R+   L+  D +ARL G+ F  +L 
Sbjct: 334 S-QVAVVFVDLDRFKPINDEYGHGVGDLVLKATAMRLRSGLRASDTVARLGGDEFVAVLT 392

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P  +    +++  S G A + +    +  +++ A+ AMY
Sbjct: 393 HCQTRDDVEQTVERLIEQLQAPFRVEGHVLSMGVSAGVALYPADGRDAQTLIRCADAAMY 452

Query: 683 HAKHRGG 689
             K  GG
Sbjct: 453 EVKRAGG 459



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 25/222 (11%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +  D      A+  S   +         +     +  + G  + ++    R+     H 
Sbjct: 40  AMLEDHHLYKAAIEHSPIGIGLCAPKGRFLDVNRALCALTGHEAQAL--RARDLFDLCHP 97

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIA 516
           +  D  R  +++ +   +  L  E R    D    W+   +        +G     I   
Sbjct: 98  DHADRTRERVEALLAGEQDALSLETRFVRPDGSTVWVQADLALARTEAGDGQGGHLIVQV 157

Query: 517 NDITEQKKSLE----GILCNAF-QDNLTGI-------------PNRQSFLDRLTTILDLS 558
            D+T ++ +LE         A+  D   G+              NR++  + L    D  
Sbjct: 158 QDVTARRLALESLQASEQRLAYVLDGA-GLGTFDWSMRVRHVSFNRRT-AEMLGHAPDEL 215

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           ++D      ++    D    +  +     GD     + +R+ 
Sbjct: 216 SSDPQDWFAMVHPQ-DAILSLRRIYRHLRGDTDSFEVEQRLR 256


>gi|309794452|ref|ZP_07688875.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 145-7]
 gi|308121908|gb|EFO59170.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 145-7]
          Length = 747

 Score =  277 bits (709), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRLPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L+ K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLDKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ I  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYIENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|295699215|ref|YP_003607108.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
 gi|295438428|gb|ADG17597.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. CCGE1002]
          Length = 771

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/478 (20%), Positives = 185/478 (38%), Gaps = 30/478 (6%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + W+I    PM+     ++ + G              +   A  D LTG+ NR+SF+   
Sbjct: 163 WTWVIAIGAPMA-----VVFHFGFYRFRRNHFLLESQLAQLAATDPLTGLQNRRSFVKHA 217

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L+  A     + + + +DID +K +ND  G AVGD  L  + + + + +   D ++R
Sbjct: 218 EGRLETLA--PGAQISAIFLDIDSFKSLNDRFGHAVGDLALFQVAQVLKDAVALYDSVSR 275

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G  F +++  + +       A  +R  IA           +TAS G A       +  
Sbjct: 276 IGGEEFALLI--DEDLTGALQLAERLRLDIAAIERPDGH---LTASFGVAE-HRRGESFM 329

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL--CLAVENSELYLVYHPIIR 729
            +L  A+ A+  AK  G N V + R   F + +    + L      E+  L   + P+  
Sbjct: 330 VLLDRADEALLRAKQTGRNRVCAERALPFDALQPPFDDVLAPRYRWEDFYLISHFQPLYS 389

Query: 730 LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR--DIISWRD 787
           L  ++ VG EAL++ +H     +                  +   L+R +    + + R 
Sbjct: 390 LSHQKQVGFEALLRGEHDDGTLVPPVVMFAPKPSS------DEGALDRASHAVHLGNARR 443

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                  ++ +NI     +     + +  ++      P R+ L   ES   G+ +     
Sbjct: 444 ALPG-DAWLFLNILPATFVAEGYADQLTKIVRAAGLEPERVILEILESHG-GSVDEMSRA 501

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMA 906
             R R+ G  + +DDFG   S L  L  I  D VK +G L+  +T      IL  ++ + 
Sbjct: 502 AARYRQHGFLIAVDDFGAGQSNLDRLLRIRPDIVKLDGELIRATTHGTQQPILPKLVSLL 561

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP----LGFNSILKLLKERFPLV 960
                 ++ + +    ++        D+ Q   +  P        S+ + + + F ++
Sbjct: 562 HQAGMLVVVEGVETADELILAVESNVDFAQGFLLGRPAVEIAPPESVHRQIDDAFDVI 619


>gi|262165875|ref|ZP_06033612.1| hypothetical protein VMA_002324 [Vibrio mimicus VM223]
 gi|262025591|gb|EEY44259.1| hypothetical protein VMA_002324 [Vibrio mimicus VM223]
          Length = 819

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 190/562 (33%), Gaps = 38/562 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G   +      H      +  +        
Sbjct: 138 GVVITDDKTRILACNRYFEQQTGYQQSELLGLKTSMFNSGKHSQ--HFYIDMWRQLQEQ- 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
            G        + A  +  W         N   D   YIG   D+   +     I   A  
Sbjct: 195 -GWWNGTILSQRASGE-IWPQDLAVKRLNPQKDQTFYIGFTTDL--AQHLERVIDKQAG- 249

Query: 536 DN--LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           D   LT +P    F ++L +    S                    I            + 
Sbjct: 250 DVELLTQLPTLAKFSEQLKSQTTSSTATTCFVIA-----------IQPQFSSDKHYAQIR 298

Query: 594 SLTRRIGELLKFPDILARLSGNRFGII---LISENNSLKIADFAIAMRKSIAMPINLLER 650
            L   + +       L    G    +      +   +  +      +R+  A       +
Sbjct: 299 QLAGCLAQ--NRQVKLCAYHGEGIFLCQLDAENVAGNQSLNGLQRTLRQFFAELHQCGGQ 356

Query: 651 EITVTA---SIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRV 705
            I        +G +           ++ +A  AM  +HA      +     +      R 
Sbjct: 357 AIHQAIAKGRLGVSVLGGDTDRLDRLVPHALQAMLEHHAGETRHINFYDRAIHQQIERRK 416

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ +   +EN ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAEEL 
Sbjct: 417 TLEKWVQKWIENEDVEVFYQPIVDGQTWSVVKFEALCRFHAPEVLHASTQELITIAEELG 476

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQALISKTLYS 824
           +I  ++  +  +   D+   +       I I  N +    L   ++     ALI++    
Sbjct: 477 LIDQLDALVGRKALNDLSKIQALFGHH-IGITFNRSLNSGLNAEQILLNASALIAEHPEQ 535

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
              + +  +ES    +      +L  LR+ G+++ +DDFGT  S  SYL    FD +K +
Sbjct: 536 AKNVTVELTESAYFNSQFHGCRILQTLRESGVTIAIDDFGTGFSSFSYLTECQFDYLKID 595

Query: 885 GSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              ++G     +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A 
Sbjct: 596 REFISGIEAGSRRYAIVKMMTDLAHTLGVKVVAEGVETEYEVHVLKSLGVDLLQGFFFAK 655

Query: 943 PLGFNSILKLL--KERFPLVKN 962
           PL  + ++  L  ++ F L   
Sbjct: 656 PLPMSQLIHALDYRKNFRLTTR 677


>gi|323188204|gb|EFZ73497.1| EAL domain protein [Escherichia coli RN587/1]
          Length = 747

 Score =  277 bits (708), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 190/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSVL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNTP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V++   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVVMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I++++LE   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVLEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|218672377|ref|ZP_03522046.1| putative kinase/esterase protein [Rhizobium etli GR56]
          Length = 242

 Score =  277 bits (708), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 7/229 (3%)

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G EAL++W H + G ++ + F+  AEE  +I A+  ++L    R   +W +       F+
Sbjct: 12  GAEALVRWRHSQRGLLTPASFIPAAEEGGLIDALGFWVLREACRAACTWPE-----DTFV 66

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++   L      E + A++ +T   PSR++L  +ES ++ +      +L  LR  GI
Sbjct: 67  AVNVSPAQLRRPNFAEEVFAVLEETGLPPSRLELELTESSLIEDNSDVYTVLKSLRSRGI 126

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTII 914
            ++LDDFGT  S LS+L     D +K + S ++         AI+ +I+ +++N+  +  
Sbjct: 127 QISLDDFGTGFSCLSHLVRFDIDRIKIDRSFVSQLGAKANGAAIIGAIVTLSRNLGISTT 186

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           A+ +  E     LT +GC  +Q    + P+    +    K        T
Sbjct: 187 AEGVETEYQRDFLTALGCTDLQGYFFSKPVPLRELDGFAKSESGAGSRT 235


>gi|262173689|ref|ZP_06041366.1| GAF domain/GGDEF domain/EAL domain protein [Vibrio mimicus MB-451]
 gi|261891047|gb|EEY37034.1| GAF domain/GGDEF domain/EAL domain protein [Vibrio mimicus MB-451]
          Length = 612

 Score =  277 bits (708), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/435 (22%), Positives = 193/435 (44%), Gaps = 16/435 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           ++  +T +PNR  F+ RL   ++L   + + +  V    I K K ++ +    V + +++
Sbjct: 167 YRCEVTQLPNRLGFIRRLQAQINL---NPDQKVFVGTAHIQKMKYLSIIYDNEVKNSLIL 223

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++++R+        +L+ +    F      E+    +      +  ++  PI + +  ++
Sbjct: 224 AMSQRLRSF-PNWTLLSHIGEGNFAFAWFGEDKRSDVE----RLLATLCEPIPIKDTLVS 278

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           +T +IG    +S + +S  +L  AELA +     G  +V   +     +  + ++  L  
Sbjct: 279 ITVNIGITCSSSGQSSSVALLDLAELASHEWNKAGIANVHYEQADCNNAMIMAVRACLHT 338

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              ++ +   Y P I +   E+VG EAL++W +P++ N+   +   + E   ++ AI+L 
Sbjct: 339 DSSDNYITPYYQPQIDIASGELVGFEALLRWHNPQFQNVPLHQLFELIEINGIVPAIDLL 398

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + +++   I  WR      P  I  NI+   L  N+L   +  +  K   SP+   L  +
Sbjct: 399 IFKKVCEHISQWRASGLTLP-KISTNISRTTLQTNQLTNQLLTIAEKYGLSPNLFTLEIT 457

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES V          +  LR+ G ++ +DDFGT  S ++ L  I    +K +     G + 
Sbjct: 458 ESGVPLEDRILFERINTLRQAGFNIAIDDFGTGMSNIATLKNIDSQLLKVDRQFAHGVSA 517

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                A+LR I   A ++   ++ + I  + D+  L   G D +Q  + A  L    I  
Sbjct: 518 NGHIAALLRLIKGTADSLNIALLVEGIEEQEDVDWLRSAGIDLVQGWYFAKALTPELIPS 577

Query: 952 LLKE-----RFPLVK 961
           +L E     +FP ++
Sbjct: 578 VLSELRQQPKFPTIQ 592


>gi|325121632|gb|ADY81155.1| cAMP phosphodiesterase, heme-regulated [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 459

 Score =  277 bits (708), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 121/266 (45%), Gaps = 3/266 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         + +DL LA+   +  L Y P I    E ++G EAL++W HP  G
Sbjct: 189 CISIYTMQLEIQTESTMVQDLRLALIKEQFELFYQPQIN-ASETLIGAEALLRWHHPVLG 247

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + +F+  AE   ++  I  ++L +  + +  W  +A    + + INI++   +    
Sbjct: 248 YIPTKDFIPAAETFGLMPEIGEWVLAQACKVLQEWSKKAETKDLTLSINISADHFMQPNF 307

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  LI K   +PSR+ L  +E++ + N       +  L K G+ L+LDDFGT  S L
Sbjct: 308 EQTVIGLIQKYEVNPSRLILEITENIALTNCVSMIEKMNFLSKQGVQLSLDDFGTGYSSL 367

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 368 SYLQKMPIRQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETHEQFSAFK 427

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
             GC   Q      P+  N  LK + 
Sbjct: 428 NNGCTEFQGYLWGCPMPLNDFLKQIA 453


>gi|296283197|ref|ZP_06861195.1| diguanylate phosphodiesterase [Citromicrobium bathyomarinum JL354]
          Length = 746

 Score =  277 bits (708), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 167/425 (39%), Gaps = 19/425 (4%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D ++ +PN  +           SA++      V+V+ I +   I   L        L 
Sbjct: 325 YIDPISKLPNFSALRRDF------SASEGQGDLGVVVVKILRLDSIFAHLSEGEKRAYLR 378

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            ++ R+  +      +    G  F  IL +  +          +R  ++ PI +  + I 
Sbjct: 379 QISDRL-SITGKNTKIYFDGGKYFAFILDAAIDYESHLSG---LRAIVSQPIIIASKSID 434

Query: 654 VTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
           V  ++G    +        S  +  A+ A    +      + S            +   L
Sbjct: 435 VAVTVGADFSSRGLPAHRMSSAIAAADHAREAFQ---PVFIVSDACHDDDEWDHSLTARL 491

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+    + +   P +     + VG E L +W       IS + F+   E +  +  + 
Sbjct: 492 AEALAEDRISIKLQPQVDFKTGKFVGAEVLARWQDEAGNEISPARFIPQFERMARLDELT 551

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +L++    + S ++      + + +N+++   +D  + E ++  + +    PS +K+ 
Sbjct: 552 SRILDKAMAALRSLQESG--CALPLSVNVSAVQFVDERIAEIVEKSLREYNVDPSLLKIE 609

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  + + E +  ++ RLRK GI+ +LDDFG   + L  L  +PFD VK +   +   
Sbjct: 610 VTETARIEDFETACQIVERLRKQGITFSLDDFGVGSANLEALQRLPFDEVKIDQLFIQQL 669

Query: 892 TE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K  AI+  ++  A     T +A+ I        L+ +GCD  Q   +A P+  +  
Sbjct: 670 AGSCKTRAIVEGVLHTASKAGMTSVAEGIEDLETHAWLSSLGCDRGQGYFIAKPMLVSQF 729

Query: 950 LKLLK 954
             L++
Sbjct: 730 TSLIE 734


>gi|254447930|ref|ZP_05061394.1| diguanylate phosphodiesterase [gamma proteobacterium HTCC5015]
 gi|198262356|gb|EDY86637.1| diguanylate phosphodiesterase [gamma proteobacterium HTCC5015]
          Length = 266

 Score =  277 bits (708), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 114/240 (47%), Gaps = 3/240 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L   +   E    Y P+  +  +   G+E L++W HP  G I    F+ +AE+  +I 
Sbjct: 16  NALADGLNKGEFVPFYQPLWDVQRQCWEGVETLVRWQHPTEGLIQPDTFIPVAEQSGLIL 75

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  F+L+   + ++ WR +     I I +N+++  +   +  E +  ++  T      +
Sbjct: 76  ELGAFVLQAACQQMMHWRQRGLPEGI-IAVNVSALQIHQPDFVEDLARILRDTGLPAPAL 134

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E++ + +       L R + +GI L++DDFGT  S L+ L   P   +K + + +
Sbjct: 135 ELELTETLALEDTPILIENLHRCQALGIRLSIDDFGTGSSSLARLQCCPVTRLKIDKTFV 194

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           T  T   K  AI  SII +  N+  +I+A+ +      + L ++GCD +Q   +A P   
Sbjct: 195 THMTTEPKDRAITESIITLGHNLNLSIVAEGVETAAQQQLLEKLGCDVLQGYRLARPADA 254


>gi|227887123|ref|ZP_04004928.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972]
 gi|227835473|gb|EEJ45939.1| sensory box-containing diguanylate cyclase [Escherichia coli 83972]
 gi|307554141|gb|ADN46916.1| predicted signal transduction protein containing PAS, GGDEF and EAL
            domains [Escherichia coli ABU 83972]
          Length = 1105

 Score =  277 bits (708), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 97/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATCIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      ++     + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTVYEPQQAATNSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ +         +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAASV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-ITPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 88.1 bits (217), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|320180490|gb|EFW55421.1| Putative cytochrome C-type biogenesis protein [Shigella boydii ATCC
           9905]
          Length = 747

 Score =  277 bits (708), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKKKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++   L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFSLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         +N++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAMNLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N ++++++L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQIILQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|320185203|gb|EFW59983.1| Putative cytochrome C-type biogenesis protein [Shigella flexneri
           CDC 796-83]
          Length = 732

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 181/439 (41%), Gaps = 20/439 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 310 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 358

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 359 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 418

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 419 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 477

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 478 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 535

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 536 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 593

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 594 QARFPFEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 653

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 654 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 713

Query: 925 KELTRMGCDYIQDSHVASP 943
           + +  +G DY+Q   +  P
Sbjct: 714 EAVLSLGIDYMQGYLIGKP 732


>gi|323967947|gb|EGB63359.1| MASE1 protein [Escherichia coli M863]
          Length = 747

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E +  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTEAHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 DNDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPFEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|300902290|ref|ZP_07120286.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|301304496|ref|ZP_07210607.1| PAS domain S-box [Escherichia coli MS 124-1]
 gi|300405599|gb|EFJ89137.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300840222|gb|EFK67982.1| PAS domain S-box [Escherichia coli MS 124-1]
 gi|315255422|gb|EFU35390.1| PAS domain S-box [Escherichia coli MS 85-1]
          Length = 903

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/562 (17%), Positives = 197/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 340 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 399

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 400 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 458

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE  K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 459 SVLVIQDVTESHKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 517

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L      +  +L+  D+LARL G+ FG++L   N      
Sbjct: 518 DLDRFKAVNDSTGHAAGDALLREQASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 577

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 578 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 637

Query: 692 VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 638 VTVYEPQQAAAHSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 697

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 698 EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---LSIALPLSVAGLSS 754

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +      +      + L      +  + E       +LR  G  + L   G   
Sbjct: 755 ATLVNELLEQRENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVLSQMGRDL 810

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 811 QIFNSLKANMADYLLLDGELCANVQGNLIDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 870

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G D I    +A+    +
Sbjct: 871 TLSGIGVDLIYGDVIANAQPLD 892



 Score = 85.4 bits (210), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 68/221 (30%), Gaps = 8/221 (3%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAI------TKRLDNDIIQPAL 371
              +    +++  ++       LI    ++ +  +            T  + +    P L
Sbjct: 7   PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFL 66

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
           +  L   ++ I   +   + A     + I     R   A+  S   +         + + 
Sbjct: 67  LILLPANIMTIANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQSN 126

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
             +   LG +   + G    +       D +     ++  +         E R    +  
Sbjct: 127 KALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGD 184

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 185 VVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 225



 Score = 83.1 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +       Q      ER +LA    G  +W+W++  +  +    +  +  +
Sbjct: 203 LYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEI 262

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 263 PPH-IKPNWQVWYECVLPEDRQHAGKVIRDSL-QSRSPFKLEFRITVKD-CIRHIRALAN 319

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 320 RVLNKEGEVERLLGINMDMTEVKQLNE 346


>gi|153831767|ref|ZP_01984434.1| rtn protein [Vibrio harveyi HY01]
 gi|148872277|gb|EDL71094.1| rtn protein [Vibrio harveyi HY01]
          Length = 501

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 116/252 (46%), Gaps = 4/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ L  A+ N+E      P +     + VG E L++W  PK G I    F+ +AE+  
Sbjct: 251 SMEDKLRQALANNEFVPYVQPYVD-KTNKFVGFEVLVRWLSPKEGLIRPDLFIPLAEDSG 309

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  +   ++ +++ ++ +       P   +  NI++K  +++EL E     +S      
Sbjct: 310 LIIPMTKSLMLQVSNELAACSQSLP-PDFSVAFNISAKHCVNSELLEDSLEFLSSFPEKK 368

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            ++ L  +E  ++ + + +R L   L +  +SL +DDFGT  S LSYL    FD +K + 
Sbjct: 369 VQLCLELTERELVRDTDEARALFHSLSEHDVSLAIDDFGTGHSSLSYLRQFRFDILKIDQ 428

Query: 886 SLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +           I+ +++ +A  +    IA+ +      + L     D +Q  + A P
Sbjct: 429 SFVQMIGNDSVSAHIVENLLDLASRLGMKTIAEGVETAEQAEYLRSHNIDCLQGYYFAKP 488

Query: 944 LGFNSILKLLKE 955
           +     ++ L++
Sbjct: 489 MPLKDFIQQLEQ 500


>gi|262278574|ref|ZP_06056359.1| EAL domain-containing protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258925|gb|EEY77658.1| EAL domain-containing protein [Acinetobacter calcoaceticus RUH2202]
          Length = 361

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 119/263 (45%), Gaps = 3/263 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         + +DL LA+   +  L Y P I    E ++G EAL++W HP  G
Sbjct: 93  CISIYAMQLEIQTENTMVQDLRLALAKEQFELFYQPQIN-ASEILIGAEALLRWQHPVLG 151

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            + + +F+  AE   ++  I  ++L +  + +  W  +     + + INI++   +    
Sbjct: 152 YVPTKDFIPAAETFGLMPEIGEWVLAQACKVLKDWSKKDETKDLTLSINISADHFMQPNF 211

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  LI +   +PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 212 DQTVIGLIQQYEINPSRLILEITENIALNNCVSVIEKMHILSKQGIQLSLDDFGTGYSSL 271

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 272 SYLQKMPIRQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSVFK 331

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
             GC   Q      P+  N  LK
Sbjct: 332 NNGCTEFQGYLWGCPMPLNDFLK 354


>gi|170019213|ref|YP_001724167.1| diguanylate cyclase/phosphodiesterase [Escherichia coli ATCC 8739]
 gi|169754141|gb|ACA76840.1| diguanylate cyclase/phosphodiesterase [Escherichia coli ATCC 8739]
          Length = 747

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQHELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +E   + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTECNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|260438097|ref|ZP_05791913.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Butyrivibrio crossotus DSM 2876]
 gi|292809578|gb|EFF68783.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Butyrivibrio crossotus DSM 2876]
          Length = 434

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 163/417 (39%), Gaps = 10/417 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LT +P  + F+ +   ++     +   RP ++ +DI  +K  N + G   GD ++ 
Sbjct: 8   FFDELTRLPYDRYFVRQAQELI----RNQLKRPVMISLDISNFKYFNRMYGYREGDRLIS 63

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI-AMRKSIAMPINLLEREI 652
            +            +  R+  +   +++ +E    K+       M    +   N+     
Sbjct: 64  RMVECFCHNNADCVLAYRIYVDHIIMLIEAEGLPEKVFKAKYSDMLSRFSEKTNMEFPLA 123

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKED 710
            +   +G             ++  ++ A    K     ++  FR        D   I   
Sbjct: 124 RIRLYLGAYYVEDRDEDIGIIIDKSQYARRSIKANYLTYIAIFRADMEKKAVDEAKIIPM 183

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A+EN+ + +   P   + DE ++G EAL +        I    ++ I E   +I  +
Sbjct: 184 FYSALENNRIEVYIQPKFSIDDERLIGGEALSRIMDNDGNIIPPGMYIDILERTHLISKL 243

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  ++ ++      W D+   P   I +N++  DLL+    + +   I ++       + 
Sbjct: 244 DGCVIRKLIAIQKKWMDE-GRPLTTISLNLSRVDLLEQGFVDSIHQAIVESGVPSGYFEF 302

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+V   N       +  L++ G  +++DDFG+  + L  LG IP D +KF+   +  
Sbjct: 303 ELTETVFCENITEITKQIDFLKEKGYKISMDDFGSGYNSLYMLGKIPVDIIKFDRGFVLN 362

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           S   E    I++++I     ++  II + I    +   +   GC+ +Q      PL 
Sbjct: 363 SLHGETGRTIMKNLIHTFTEVDFEIICEGIENREEESIVYSCGCNAVQGYLHDKPLP 419


>gi|193076946|gb|ABO11682.2| hypothetical protein A1S_1254 [Acinetobacter baumannii ATCC 17978]
          Length = 395

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 125 CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 183

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L +  + +  W  +     + + INI++   + +  
Sbjct: 184 YIPTKEFIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 243

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +   +PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 244 EHTVIGLVQRYDINPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 303

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 304 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 363

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 364 SNGCTEFQGYLWGCPMSLNEFIKQL 388


>gi|295106270|emb|CBL03813.1| FOG: EAL domain [Gordonibacter pamelaeae 7-10-1-b]
          Length = 696

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 169/451 (37%), Gaps = 31/451 (6%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           ++ + G  +   +++ +   +    + D LT   +R +F   L                +
Sbjct: 264 LVAFAGFVSARMKRESAQRLVAELTWNDYLTCASSRAAFYRDLDRGTFERVGLALADADL 323

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
           + +       +N   G +VGD++L  +   + E+    D + R+  + F  +  + +   
Sbjct: 324 LAV-------VNREQGRSVGDEMLRRMAACLREVF--GDAVYRIGDDEFCAVSTAIDYDR 374

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  A+R+ +   I          AS+G A W  +      +L  A   M  AK  G
Sbjct: 375 FAELTERAIRRFLEESIP---------ASLGSA-WHETCTDIVGLLDVAGDRMRSAKR-G 423

Query: 689 GNHVESFRVSSFRSDRVMIKEDLC-----LAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            +      +             L       AVE     +   P       E+VG EALI+
Sbjct: 424 RHRAVDLGIDLTSDVVAS--SLLRPGGAQEAVEAGLFTIHLMPQASGKTGEVVGAEALIR 481

Query: 744 WDHPKWG-NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +  P+ G  +  + F+   E++  + A++ F L +    +  W+ +   P + + +N + 
Sbjct: 482 YRDPERGREVLPASFIPALEDMDEMGALDFFALSKSCETVARWQQE-GRPAMPLAVNFSR 540

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           + + D    + + + ++      S I++  +ES    N    R +   L  +G  + +DD
Sbjct: 541 RTIDDEGFVDRVASTVASYGIDRSLIEIEITESAREENEALLRAVTEGLHDLGFRVAIDD 600

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYG 920
           FG   +       + FD +K + SL+ G       +  + S++ +  ++    +A+ I  
Sbjct: 601 FGVDNASFQLFFQLGFDVLKLDKSLVWGLDTTDRTMQVICSLVRLCDDLGIETVAEGIET 660

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
               + L   GC  +Q   V  P       +
Sbjct: 661 GEQHQALQEAGCTRVQGYRVGRPQPIEEFER 691


>gi|187920506|ref|YP_001889538.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
 gi|187718944|gb|ACD20167.1| diguanylate cyclase/phosphodiesterase [Burkholderia phytofirmans
           PsJN]
          Length = 777

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 183/488 (37%), Gaps = 44/488 (9%)

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
           + W++    P       ++ + G              +   A  D LTG+ NR++F+ + 
Sbjct: 163 WMWIVAIGVPT-----SVVFHFGFYRFRRNHFLLESQLAQLAATDPLTGLQNRRAFVKQA 217

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              LD      + R + + +DID +K +ND  G A+GD  L  + + + E +   D ++R
Sbjct: 218 ERRLDTV--TPDTRTSAIFLDIDNFKSLNDRFGHAIGDHALYQVAQVLMEEISADDSVSR 275

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           + G  F ++L            A  +R +IA       R   +TAS G A    S  +  
Sbjct: 276 IGGEEFALLLGD--GLTGALHVAERLRHAIAAIERPDGR---LTASFGVAE-HRSGESIM 329

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED----------LCLAVENSELY 721
            +L  A+ A+  AKH G N V + R        + +  D               E   L 
Sbjct: 330 VLLDRADEALLRAKHSGRNRVRAERALPRE--ALQLLADDGSDENGAPVRRHRWEEYYLT 387

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR- 780
             + P+  L  ++ VG EAL++ +      +  +               +   L+R +  
Sbjct: 388 SYFQPLYSLSHQKQVGFEALLRGEQDDGTLVPPAVLFAPRPSS------DEGGLDRASHV 441

Query: 781 -DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV--V 837
             + + R        ++ +NI     +     + +  ++      P R+ L   ES    
Sbjct: 442 VHLANARKSLPD-DAWLFLNILPATFIAEGYADQLAKIVRSVGLEPERVILEILESHGGS 500

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK-RI 896
           + +  R+  L    R+ G  + +DDFG   S L  L  I  D VK +G L+  +      
Sbjct: 501 VDDMSRAAAL---YREHGFLIAVDDFGAGQSNLDRLLRIRPDLVKLDGELIRATGHGTEQ 557

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP----LGFNSILKL 952
            IL  ++ +       ++ + +    ++        D+ Q   +  P        S+ + 
Sbjct: 558 PILPKLVSLLHLAGMLVVVEGVETAEELILAVESNVDFAQGFLLGRPAKEIAPPESVHRR 617

Query: 953 LKERFPLV 960
           + E F ++
Sbjct: 618 IDEAFDVI 625


>gi|226941359|ref|YP_002796433.1| hypothetical protein LHK_02442 [Laribacter hongkongensis HLHK9]
 gi|226716286|gb|ACO75424.1| Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           withPAS/PAC sensor [Laribacter hongkongensis HLHK9]
          Length = 418

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 125/248 (50%), Gaps = 4/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+EN E  L Y P + +    ++G EALI+W HP+ G ++  EF+ + E   +++
Sbjct: 34  ARIRQALENEEFLLYYQPKVDMRAGTVIGAEALIRWQHPERGLLAPIEFLPLIEGDDLVR 93

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++ER    + +W+       + + +NIA + L      + ++  + + L    ++
Sbjct: 94  RLGNWVIERALSQLETWQADGLN--LQLSVNIAGQHLQSPGFVQELKEALQRHLGVAQQL 151

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L   E+V + +  ++  ++   + +G+  +LDDFGT  S L+YL  +P +T+K + S +
Sbjct: 152 ELEVLETVALEDVAKTSRVIDECKTLGVHFSLDDFGTGYSSLTYLKRLPAETIKIDQSFV 211

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                    +AI++ +I +A   + T+IA+ +      + L ++ C+  Q   +A P+  
Sbjct: 212 RDILHDCNNLAIVQGVIGLANAFQRTVIAEGVESAEHGRILLQLNCNLAQGYGIARPMPA 271

Query: 947 NSILKLLK 954
                 L+
Sbjct: 272 AQFPDWLR 279


>gi|188997136|ref|YP_001931387.1| diguanylate phosphodiesterase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932203|gb|ACD66833.1| diguanylate phosphodiesterase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 346

 Score =  276 bits (707), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 141/358 (39%), Gaps = 22/358 (6%)

Query: 595 LTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAI-AMRKSIAMPINLLEREI 652
           +  R+   +   ++ + +LSG+ F I++           F    +    + PI +    I
Sbjct: 1   MAERLKSFVSNHNLQVYKLSGDEFAILVDRYFPQNAFEMFINGLIYYIESNPIEINGYSI 60

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF---RVSSFRSDRVMIKE 709
            +  ++G A  T        +L+ A++A+ +AK +   ++       +     +      
Sbjct: 61  KIDITLGIADSTEG--NYKNLLEKADMALKYAKQQKKPYMFYREDLNIQKKYQENRYWLN 118

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+    L + Y  I      +I   E+LI+        IS   F+ +A++  +   
Sbjct: 119 VLKDAINQDNLIVYYQGIFNNQTNKIEKYESLIRLKLED-KIISPFFFLEVAKKSKLYPE 177

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   +   I +               I INI+  D+L+ ++   +   +        +I 
Sbjct: 178 ITKKVFSEIIKYAKDHE---------ISINISVMDILNEDIVSHILNTLKNNNL---KIT 225

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
               ES  + N       +  +++ G  + +DDFG+  S  +++  +  D +K + SL+ 
Sbjct: 226 FEILESEGIENYAEVSQFIKNVKEYGCKIAIDDFGSGYSNFAHILNLDVDYLKIDASLIK 285

Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
                +    ++ +I+  AK +    IA+ ++ +    ++  MG DY Q  +++ P  
Sbjct: 286 NLDTDKNSQIVVETIVGFAKKLGIKTIAEFVHSKEVFDKVVEMGIDYSQGYYISEPKP 343


>gi|304412049|ref|ZP_07393659.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS183]
 gi|304349599|gb|EFM14007.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica OS183]
          Length = 403

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 169/396 (42%), Gaps = 7/396 (1%)

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            TV ++ ID   +IN   GI+VGD +L +    +         + R  G  F +   S  
Sbjct: 1   MTVALVKIDNLSQINAAFGISVGDAILKAFATELKNRFGHHAKIYRFRGASFALEFTSLP 60

Query: 626 NSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                 + A+ +R+ I   + L  E++I           + +K +  +  +   +A+   
Sbjct: 61  LISP-ENLALQLRERIPTNLQLKHEQQIEYHLECRVGCSSGNKASPQQAAEQCLIAIKQT 119

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  V    + +   +    K  +  A++++ L +   P +R  D  I+  EAL + 
Sbjct: 120 TQASPVMVYYIGLINNLLEASSQKAKIRDALKHNRLEMWLQPKVR-ADGHIISFEALARM 178

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I  + F+ I E   +     + +  ++ + I SW     +  + I  N++ +D
Sbjct: 179 FDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPKNVPL--VRIAFNLSGQD 236

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +L +   + +             +++  +E+ V    + +   L  L ++G+S+ +DDFG
Sbjct: 237 ILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTHKETGRRLNTLARMGVSIAIDDFG 296

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+ I  E 
Sbjct: 297 TGHASLSQLIDISADTIKIDRCFVSQMGISERHTQIVNAAILLAKSLKLNVIAEGIETEA 356

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + +LT +GC+  Q      P   N  LK  + + P
Sbjct: 357 QLLQLTALGCEQFQGYLFGKPAPANLWLKTFQMQTP 392


>gi|118588681|ref|ZP_01546089.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
 gi|118438667|gb|EAV45300.1| sensory box/GGDEF domain/EAL domain protein [Stappia aggregata IAM
           12614]
          Length = 489

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 142/330 (43%), Gaps = 7/330 (2%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
               +     +VG L L  +++ F     +L      + + S  +R    + G+    W+
Sbjct: 150 YHARNQWMLGVVGTLGLSFVVVCF----LLLERHTAHKRLQSSEQRLREIIFGTNVGTWE 205

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
            ++  +        A I+G     +       W    H  D +    IL   +   R   
Sbjct: 206 RNVQTEEAIYNERWAEIVGYTLAELQPVSTETWRKLTHPEDVEKSEQILAEVLSGVRESY 265

Query: 480 QYEFRVRAADNQFHWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
             E R+   + ++ W++ R R +    +G  LR  G   DIT  KK+ E +   A  D+L
Sbjct: 266 DNEIRMHHKEGRWVWVLDRGRVVEWTKDGKPLRMSGTHTDITRLKKTEEAVRRLAMTDHL 325

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ NR  F   L   + ++   +N +  +M++D+D +K +ND  G  VGD +L  +   
Sbjct: 326 TGLSNRAHFSQSLAESIAIADR-ENRKFALMMLDLDTFKPVNDRHGHPVGDALLQVVAST 384

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           I    +  D++ R+ G+ F +I+        +   A  + + ++ P+++   +I +  SI
Sbjct: 385 IKRCTRDGDVVTRIGGDEFAVIISDYAQEKDVLACAERIYREVSRPMDIKGNQINIGISI 444

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           G + +      +  ++ +A+ AMY AK  G
Sbjct: 445 GVSFYPDDADDAKSLITHADQAMYEAKKSG 474



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            D +      A   G    ++       +  +     +  R +  S   +R   +   FR
Sbjct: 31  GDILDANNAAARFYGFDRDTLRSMSIQDINQLTPEQVEAERQLARS--EHRNFFI---FR 85

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
            + A+     + +   P+ + +G     + + +DI+  ++  E +  
Sbjct: 86  HKLANGSIRSVEVHSTPV-DYDGR-KALLSVVHDISADRERQEELWH 130


>gi|94266540|ref|ZP_01290227.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93452841|gb|EAT03364.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 696

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 170/433 (39%), Gaps = 33/433 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+ NR +F       L                +ID ++ IND+ 
Sbjct: 285 RLSSELKTTATTDRLTGLANRFAFDSD-QEKLQRPLLLLL--------NIDDFRHINDLY 335

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAIAMRK 639
           G + GD VL SL   + + L  P        RL G+ FGI+L    +          +  
Sbjct: 336 GTSTGDYVLASLAGLLQDNLPTPASAWARCYRLGGDDFGIMLDEPADFNPEELANKLLSS 395

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
                    ++ I ++ SIG +           +L+NA+LA+   K         +    
Sbjct: 396 LHENEYIYHDQPIRISISIGISRQRP-------LLENADLALKEIKKHKRFRYLLYSDEL 448

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +  + I + +  A++   + + Y PII     +    E L++  + +   +S  
Sbjct: 449 KLQERIAANLEILQTVRQALDRDNILVYYQPIIDNRSGQTSKYECLVRLRNAEGAILSPG 508

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + +E  +   I   ++ +   ++               +N++  D+LD E+ + + 
Sbjct: 509 YFLDVVKESPLYPEITKQVVAKSFAEMAGCHCGF-------SLNLSVADILDTEVRDYIL 561

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +I+    +  R+     E+  M N E  R  + +++  G  + +DDFG+  S  +++  
Sbjct: 562 TMIAAQPETARRLTFEILENEGMENVEVVRGFIDQVKAAGCQIAVDDFGSGYSNFAHILT 621

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + SL+    +      ++ +I+   + +    +A+ ++       +  M  D
Sbjct: 622 LKVDILKIDASLIRNLDDDPQARILVHTIVDFCRKLGIKTVAEFVHSAPVHHTVKEMEID 681

Query: 934 YIQDSHVASPLGF 946
           Y Q  ++  P  F
Sbjct: 682 YSQGFYLGEPGPF 694


>gi|218706002|ref|YP_002413521.1| hypothetical protein ECUMN_2817 [Escherichia coli UMN026]
 gi|293405938|ref|ZP_06649930.1| cytochrome C-type biogenesis protein [Escherichia coli FVEC1412]
 gi|298381687|ref|ZP_06991286.1| inner membrane protein yfgF [Escherichia coli FVEC1302]
 gi|300897612|ref|ZP_07116019.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 198-1]
 gi|218433099|emb|CAR13994.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|291428146|gb|EFF01173.1| cytochrome C-type biogenesis protein [Escherichia coli FVEC1412]
 gi|298279129|gb|EFI20643.1| inner membrane protein yfgF [Escherichia coli FVEC1302]
 gi|300358641|gb|EFJ74511.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 198-1]
          Length = 747

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I +    +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITELDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+   I  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQLITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|332087949|gb|EGI93074.1| EAL domain protein [Shigella boydii 5216-82]
          Length = 747

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 187/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++   L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFSLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         +N++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAMNLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|258623429|ref|ZP_05718432.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584244|gb|EEW08990.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 612

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 188/424 (44%), Gaps = 11/424 (2%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           ++  +T +PNR  F+ RL   ++L   + + +  V    I K K ++ +    V + +++
Sbjct: 167 YRCEVTQLPNRLGFIRRLQAQINL---NPDQKVFVGTAHIQKMKYLSIIYDNEVKNSLIL 223

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           ++++R+        +L+ +    F      E+    +      +  ++  PI + +  ++
Sbjct: 224 AMSQRLRSF-PNWTLLSHIGEGNFAFAWFGEDKRSDVE----RLLATLCEPIPIKDTLVS 278

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           +T +IG    +S + +S  +L  AELA +     G  +V   +     +  + ++  L  
Sbjct: 279 ITVNIGITCSSSGQSSSVALLDLAELASHEWNKAGIANVHYEQADCNNAMIMAVRACLHT 338

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              ++ +   Y P I +   E+VG EAL++W +P++ N+   +   + E   ++ AI+L 
Sbjct: 339 DSLDNYITPYYQPQIDIASGELVGFEALLRWHNPQFQNVPLHQLFELIEINGIVPAIDLL 398

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + +++   I  W+      P  I  NI+   L  N+L   +  +  K   SP+   L  +
Sbjct: 399 IFKKVCEHISQWQASGLTLP-KISTNISRTTLQTNQLTNQLLTIAEKYGLSPNLFTLEIT 457

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES V          +  LR+ G ++ +DDFGT  S ++ L  I    +K +     G + 
Sbjct: 458 ESGVPLEDRILFERINTLRQAGFNIAIDDFGTGMSNIATLKNIDSQLLKVDRQFAHGVSA 517

Query: 894 KR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
                A+LR I   A ++   ++ + I  + D+  L   G D +Q  + A  L    I  
Sbjct: 518 NGHIAALLRLIKGTADSLNIALLVEGIEEQEDVDWLRSAGIDLVQGWYFAKALTPELIPS 577

Query: 952 LLKE 955
           +L E
Sbjct: 578 VLSE 581


>gi|83745611|ref|ZP_00942669.1| Hypothetical Protein RRSL_04671 [Ralstonia solanacearum UW551]
 gi|83727688|gb|EAP74808.1| Hypothetical Protein RRSL_04671 [Ralstonia solanacearum UW551]
          Length = 489

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 3/337 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V A     + + +  ER +  + G+G   +DW +    V+     A +LG    
Sbjct: 151 IVQVQDVTARRLALESLQASEERLAYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGYEPD 210

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            +    ++W   +H  D       +   +       + E R+R A+ Q+ W+  R R   
Sbjct: 211 ELSSDPQDWFAMVHPQDAVLSLRRIYRHLRGDADSFEVEQRLRGAEGQWVWVSARGRVTQ 270

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G  +R  G   D+T+++  L+     A  D LT +PN +   DRL   +  +    
Sbjct: 271 RDGFGIAVRVSGTLQDVTKRRAMLDQAHHLALHDPLTDLPNARLLRDRLFVAIQAARRAR 330

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +L   V+ +D+D++K IND  G  VGD VL +   R+   L+  D +ARL G+ F  +L 
Sbjct: 331 SL-VAVVFVDLDRFKPINDEYGHGVGDLVLKATAMRLRSGLRASDTVARLGGDEFVAVLT 389

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P  +    +++  S G A + S    +  +++ A+ AMY
Sbjct: 390 HCQTRDDVEQTVERLIEQLQAPFRVEGHVLSMGVSAGVALYPSDGRDAQGLIRCADAAMY 449

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
             K  GG     F  S      + +++    A  + E
Sbjct: 450 EVKRAGG-SGFGFHASLNYERLMNMRQRGPDADGDGE 485



 Score = 72.3 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 3/129 (2%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            +  D      A+  S   +         +     + T+ G  + ++    R+     H 
Sbjct: 40  AMLEDHHLYKAAIEHSPIGIGLCAPEGRFLDVNRALCTLTGHEAQAL--RARDLFDLCHP 97

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  D  R  +++ +   +  L  E R    D    W+   +       GD    I    D
Sbjct: 98  DHADRTRERVEALLAGEQEALSLETRFVRPDGSTVWVQADLAVARADAGD-GHLIVQVQD 156

Query: 519 ITEQKKSLE 527
           +T ++ +LE
Sbjct: 157 VTARRLALE 165


>gi|291085046|ref|ZP_06351862.2| inner membrane protein YfgF [Citrobacter youngae ATCC 29220]
 gi|291071749|gb|EFE09858.1| inner membrane protein YfgF [Citrobacter youngae ATCC 29220]
          Length = 756

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 179/456 (39%), Gaps = 27/456 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ +I +    T Q+         AF D +  IPN ++    L           +    +
Sbjct: 308 IVNFIAVLA--TRQRFVTRRNHRLAFFDPMVHIPNLRALNRDLRK---------SPWSVL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    GI +       L + I  LL+  + + +LSGN   +   +E +  
Sbjct: 357 CFLRVPGMELLVKNYGIMLRIQYKQKLAQWITPLLEQDEHVYQLSGNDLVLRFNTEAHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML----KNAELAMYHA 684
           +I      +++            +     I F    +       +L      AE+++   
Sbjct: 417 RIEALDRHIKQF---RFIWDGMPLQPQVGISFCYVRAPVNHIYLLLGELSTIAEISLATN 473

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                       +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++ 
Sbjct: 474 SPENMQRRGVMHLQRDLKDKVAMMNRLQQALEHNHFFLMAQPISGVRGD--VYHEILLRL 531

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I+   F+ +A E  +  +I+++++E   + +   R++         IN++   
Sbjct: 532 RGDDGETIAPDSFLPVAHEFGLSSSIDMWVIENTLKFMAQNREKMPAR--RFAINLSPTS 589

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +    L   +  L++K      ++    +ES  + + E+++  L +L+ +G  + +DDFG
Sbjct: 590 VCRARLPHDINQLLTKYKVEAWQLIFEVTESNALTDAEQAQATLLQLQSLGCQIAIDDFG 649

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+     ++A+ +  E 
Sbjct: 650 TGYASYARLKNVNADILKIDGSFIRNIVSNSLDYQIVASICHLARMKRMLVVAEYVESEE 709

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
               +  +G DY+Q   +  P   ++    L+E+ P
Sbjct: 710 IRSAVISLGIDYLQGYLIGKPQPLSAT---LEEQVP 742


>gi|89053129|ref|YP_508580.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
 gi|88862678|gb|ABD53555.1| diguanylate cyclase/phosphodiesterase [Jannaschia sp. CCS1]
          Length = 514

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 175/414 (42%), Gaps = 9/414 (2%)

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L  +LD  A         +++ ID +  ++D  G    +D+   +  R+   L+  D+L 
Sbjct: 88  LVAMLDRVADLPGRDTACILLQIDDWALLHDRWGHDTREDLAARVEDRLQTALRNGDLLT 147

Query: 611 RLSGNRFGIILISENNSLKIAD--FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           RL   RFGI+L    ++           +  ++A P+ +    + +TASIG ++     +
Sbjct: 148 RLGDARFGIVLSPLPSARLGLRDTITTRLADAVADPLPMRGTALRLTASIGHSAMIKQGV 207

Query: 669 TS-SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYH 725
                  K AE A+  A   G   + ++     R+  +   + E++  A+ +  +   + 
Sbjct: 208 DPADTTFKAAEAALGEATANGPGTIRAYAPGMGRARALQSSLSEEVEAAIHDGAITAWFQ 267

Query: 726 PIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           P I      + G+E L +W HP  G +   EF    E    +  +   +L +  + +  W
Sbjct: 268 PQIHARTGTLAGMETLARWQHPNHGVLGPKEFFSAVEASGHMPLLGQTLLHQALKALQDW 327

Query: 786 RDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
              +   P+ I IN ++ +L D  L   + + +++   +P R+ +  SE+V     + + 
Sbjct: 328 DAMSAHIPL-ITINFSATELRDQNLAATLASEVARYGLAPERVVVEISETVATQVEDDAI 386

Query: 846 -LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSI 902
              L  +R  G  L LD FG   + L  L       VK + S +        +   + +I
Sbjct: 387 VATLQAMRHAGHRLDLDGFGLGAASLPTLQRFAVSRVKIDRSFVLDIDLDHGKRQSVTAI 446

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           + MAK +    IA  +  + +   L  +GCDY+Q   VA P+G +++    +  
Sbjct: 447 VAMAKAMGIETIANGVETQTEQDALLALGCDYLQGFGVARPMGLDNVADWARAH 500


>gi|88798753|ref|ZP_01114336.1| EAL domain protein [Reinekea sp. MED297]
 gi|88778516|gb|EAR09708.1| EAL domain protein [Reinekea sp. MED297]
          Length = 725

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 169/435 (38%), Gaps = 20/435 (4%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  +A+ D  TG+ NR     RL   LDL          ++VI+I  Y  +   LG   
Sbjct: 301 RLARHAYFDEDTGLYNR----QRLRRELDLMPEIVWENGQLLVIEIANYASLIASLGKDF 356

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
               L  L  R+ E      + AR S +    ++   +   +I D    + K       L
Sbjct: 357 ILTYLELLHSRVIEQFSDIHVWARFSPDSLVYLINENDQPTEIDDLKARLEKPYDDIFEL 416

Query: 648 LEREITVTASIGFASWTS---SKITSSEMLKNAELA-MYHAKHRGGNHVESFRVSSFRSD 703
                    SI           +    E   + +LA  Y  + +      S  +      
Sbjct: 417 H-------LSIRALVIPLKHLDQRDIEEAFSSIDLAKFYMQEKQIFVMEYSPSIVQIADV 469

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           R+ + + L   +E   L +V+ P + L   + VG EAL +W   +   +    F+ IA+ 
Sbjct: 470 RIRMMQQLHADIEAKRLSVVFQPKVELETRKPVGCEALARWSFEE-KPVPPDSFINIAQN 528

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I  ++L + E++        +  +   I + +N++  ++ D +        +++T  
Sbjct: 529 AGFIDQLDLCIAEQVLEKTHLLNELGH--KITVSLNMSPSEVGDRKFESQFLDKVTQTNL 586

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R+++  +E   + + E     L +L+  G+ + LDDFG   S L ++  +  D +K 
Sbjct: 587 EIDRLEVEITEEEPVRDYEYLSEFLEKLQNAGLRIALDDFGKGYSSLMHITKLTVDVIKV 646

Query: 884 NGSLMTG-STEKRIAI-LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +   +      +  A+ +   + +A+ +   +IA+ I  E    +L  +G  + Q    A
Sbjct: 647 DREFVNDFLHNRSSAMAIELSVALAERLGLELIAEGIETEEQETKLKELGVRFGQGYFYA 706

Query: 942 SPLGFNSILKLLKER 956
            P+ ++  +  L   
Sbjct: 707 KPMPWDDFVNWLNTH 721


>gi|322836791|ref|YP_004210705.1| diguanylate phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321165878|gb|ADW71578.1| diguanylate phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 668

 Score =  276 bits (706), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 121/268 (45%), Gaps = 7/268 (2%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +          + DL  A+   E    + P++ L   E+ G E L +W HP  G +   +
Sbjct: 1   MEWRFCLTRRKRLDLSSALARGEFVPYFQPLVDLRTGELRGCEVLARWVHPTRGIVLPDD 60

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AEE  +I A++  +L +      +           + +NI+     D  L + +  
Sbjct: 61  FIPYAEESGIIAALSECVLSKAFEACATLNQT-----FVLSVNISPIQFRDPILSKRLSE 115

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L ++  +   R+K+  +ES ++ N   ++ +  +L+ +G+ L+LDDFGT  S L++L  +
Sbjct: 116 LSTRHRFPLDRVKVEITESTLLTNLADAQSISTQLKLLGVKLSLDDFGTGYSSLAHLQAL 175

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           PFD +K + S ++      + + I+ ++I + +++  T +A+ I        L  +GC+ 
Sbjct: 176 PFDEIKIDRSFVSSMCCRRESMKIVAAVIGLGRSLGLTTVAEGIEESAQADMLRCLGCEV 235

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
            Q      P+    +  +L    P    
Sbjct: 236 GQGWFYGRPVPIEELQAMLALSRPSSHR 263



 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  +       + +    +     V  +  I +  D     +  +P  A + GL    
Sbjct: 396 VTVVDISDRKAAERALAESEDHFRHMVQLNPQIPYTMDPNGLILDMSPRWAELTGLTFEE 455

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
             G  R WL  +H  D     +   + +     ++  EFRV   D  +HWM  R  P  +
Sbjct: 456 TCG--RGWLRTVHPEDATTLVSKCLAAIKA-AVQIDVEFRVLGRDKLWHWMRSRAAPRMD 512

Query: 505 SNGDILRYIGIANDITEQKKSLEGIL 530
            +G I+++ G    I +QK++ E + 
Sbjct: 513 RDGAIIKWYGSVELIDDQKQAQEQLW 538



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           +      GS   +   D     V+     A + G  + +  G  R     +     +   
Sbjct: 289 QLQAIYDGSPVGLCFVDRELRYVSVNQRHAQMNGAPAEAHLG--RTVREMVPEPFYEKVV 346

Query: 466 TILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             L   +G      ++ E R      +   ++   +P  + NG+++       DI+++K 
Sbjct: 347 PYLTRALGGEAIHGVELERRDHIKGVKCATILSTYQPAQDENGEVIGVSVTVVDISDRKA 406

Query: 525 SLE 527
           +  
Sbjct: 407 AER 409


>gi|268609747|ref|ZP_06143474.1| putative signaling protein [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 123/250 (49%), Gaps = 5/250 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++  A+EN+EL + Y P+   M   +   EAL++W  P    +  ++F+  AEE  +I  
Sbjct: 7   EIRAALENNELCVYYQPMYVTMTGMLKSAEALVRWIKPNGTLVPPNDFIPKAEETDLIID 66

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I+ F+ E + R +     Q  MP   I +N + + + +N   E + A++ K       I+
Sbjct: 67  IDWFVTETVCRTL---EKQNFMPQFPISVNFSRQHIRENNFIEKLTAIVDKYELPHPLIE 123

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +ES ++GN E+    +  +R  G ++ +DDFG+  S L ++  IP D +K + SL++
Sbjct: 124 IEITESAMVGNEEQLYDWIVSIRNAGFTVAIDDFGSGLSSLQFVKDIPADVLKIDKSLLS 183

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +   EK   +L SI   A  ++   +A+ +  +  +  L    C  IQ    A P+   
Sbjct: 184 HNCEDEKERIVLESIFTFAHRLKMKTVAEGVETKEQLAFLRSCDCYKIQGYLFARPMPEA 243

Query: 948 SILKLLKERF 957
             L+L +  F
Sbjct: 244 DYLRLCQSHF 253


>gi|331648149|ref|ZP_08349239.1| inner membrane protein YfgF [Escherichia coli M605]
 gi|331043009|gb|EGI15149.1| inner membrane protein YfgF [Escherichia coli M605]
          Length = 747

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLHIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNVP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSQLLAKYQTEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|295094054|emb|CBK83145.1| FOG: EAL domain [Coprococcus sp. ART55/1]
          Length = 642

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 168/421 (39%), Gaps = 11/421 (2%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+     ++D +   L     D+ L  TV++I ++  K +  +LG+     +L  ++  
Sbjct: 225 TGLNKITRYMDDVRNSL-----DNGLDITVVMITMENDKTLRGILGVEEYHKLLREISED 279

Query: 599 IGELLKFP--DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
             E  +    D+     G      ++++    +  DFA  + + +       +  I +  
Sbjct: 280 FLEWSRPYGYDVEWYYLGTGMFRCVMNQRIKDQAEDFAERINEKLKKGYKYNDMFINLLP 339

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
            I              +++       H       +               +   L  A  
Sbjct: 340 IICITRCPQDIEDVDSVMRFGGELAEHEYTGRVLYARDIYNKERYDLMRDMDMILDKAFA 399

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
            +   + Y PI  +   +    EAL++ +   +G IS   F+  AEE  MI  I  F+LE
Sbjct: 400 ENRFEVYYQPIYSIDSGKYNSAEALLRLNDDMYGYISPEIFIPAAEENGMIHKIGKFVLE 459

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            + R I   + +      ++ +N++    + +EL E ++A++ +   S  +I L  +E+ 
Sbjct: 460 EVCRFITGEKFKNLGLE-YVEVNLSVIQCMSSELSEDVRAVMERYGVSNEQINLEITETA 518

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
                      +  L   GI+ +LDDFGT  S +  +  +PF  VK + +          
Sbjct: 519 AAYAQTTIMDNINSLTDYGIAFSLDDFGTGYSNMKRIASMPFAIVKLDKTF-ADIDTDDK 577

Query: 897 AI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +++ I M K++   I+ + +  E  ++E + +G +YIQ  + + PL  +  +  +K
Sbjct: 578 MMKVVKNTISMVKDMNMKIVVEGVETEESLREFSNLGVNYIQGYYFSRPLPQDKFISEVK 637

Query: 955 E 955
            
Sbjct: 638 R 638


>gi|302877756|ref|YP_003846320.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Gallionella capsiferriformans ES-2]
 gi|302580545|gb|ADL54556.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Gallionella capsiferriformans ES-2]
          Length = 449

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 140/328 (42%), Gaps = 20/328 (6%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
            I H L        +     R   A+ GSGD +WDWD+ ++ V  +     +LG A   +
Sbjct: 127 AISHALIRAKLEAKLIESEFRWKFAIEGSGDGLWDWDVAQNIVFYSERWKQMLGYAENEV 186

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
              +  W   IH +D+      + +++  +      E RV + D  + W++ R   +  +
Sbjct: 187 GNGLDEWEMRIHPDDKAGTLASVQAYLTGKSSSYLSEHRVLSKDGDYKWILDRGMVVARD 246

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G  +R IG   DITE+K+  + +   AF D LT +PNR+   DRL+  +         
Sbjct: 247 AEGHPIRLIGTHTDITERKRMEDQVRQLAFYDPLTQLPNRRLLNDRLSRAMSAGKRSGGY 306

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              +M +D+D +K IND         + +    R+   ++  D +AR  G+ F ++L   
Sbjct: 307 -GALMFLDLDNFKPINDTHDH----ILTIEAANRLRACVREIDTVARFCGDEFVVMLSEL 361

Query: 625 NNSL-----KIADFAIAMRKSIAMPINL---------LEREITVTASIGFASWTSSKITS 670
           + +      +    A  +   ++ P  L          E E   T SIG   +   +I  
Sbjct: 362 DTNEQASTIEATRVAEKILACLSTPYQLTVKHEGQPDTEVEYHCTTSIGLVLFLGHEICQ 421

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVS 698
            +++  A  AMY A+H G N +  ++  
Sbjct: 422 DDIIICANAAMYQARHAGRNTIRFYQAE 449


>gi|126641300|ref|YP_001084284.1| hypothetical protein A1S_1254 [Acinetobacter baumannii ATCC 17978]
          Length = 401

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 120/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 131 CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 189

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L +  + +  W  +     + + INI++   + +  
Sbjct: 190 YIPTKEFIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 249

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +   +PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 250 EHTVIGLVQRYDINPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 309

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 310 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 369

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 370 SNGCTEFQGYLWGCPMSLNEFIKQL 394


>gi|320176249|gb|EFW51310.1| putative cytochrome C-type biogenesis protein [Shigella dysenteriae
           CDC 74-1112]
          Length = 701

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/439 (17%), Positives = 181/439 (41%), Gaps = 20/439 (4%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 279 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 327

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 328 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 387

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 388 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 446

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 447 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 504

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 505 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 562

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 563 QARFPFEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 622

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 623 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 682

Query: 925 KELTRMGCDYIQDSHVASP 943
           + +  +G DY+Q   +  P
Sbjct: 683 EAVLSLGIDYMQGYLIGKP 701


>gi|326795403|ref|YP_004313223.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
 gi|326546167|gb|ADZ91387.1| diguanylate cyclase/phosphodiesterase [Marinomonas mediterranea
           MMB-1]
          Length = 859

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 191/452 (42%), Gaps = 27/452 (5%)

Query: 520 TEQKKSLEGIL-CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +E++   E  L   A  D+L+ +P +    +    I++    D +L   ++      ++ 
Sbjct: 404 SEERAKAERHLVFQATHDSLSDLPKKDVLFNNWPRIINDIPKDASLTAVIV-----HFEG 458

Query: 579 INDV---LGIAVGDDVLVSLTRR-IGELLKFPDILARLSGN-----------RFGIILIS 623
             D     G  V D+++  L  R +       + L  L  +               ++  
Sbjct: 459 YYDQVLAFGHQVADEMIKQLHFRAMKYAQNKRNFLV-LDLDWTLKKVVVLDSHDLCLISM 517

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E + +  +     M ++++  + +    + V  +IG   +  +      +++ +++A   
Sbjct: 518 ELDPVIESRMIKEMHQTLSDTMIVNGLSLEVDLTIGVCRY-RTGDVVQNLIRRSQVASKE 576

Query: 684 A-KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           A + R  +   S ++         +      A+EN  L + + P I   +  + G EAL+
Sbjct: 577 ASERRIDSLRYSDKMGLDPEYSGRLLMKFKKALENDLLQVWFQPQINTDNGSLRGAEALL 636

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W   ++G IS    +   E+  +I  +  ++  +    +  +  Q     I I IN+++
Sbjct: 637 RWHDIEYGWISPELIIPFVEQSSLIGPLTDYVTRKSCEFVEEYERQL-NSQIQIAINLSA 695

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           ++L D +L   + A++ +     + + L  +E+  +G+  +S+    +L  +G+++ LDD
Sbjct: 696 RNLEDEKLAHRIGAILVEYNVPENHVTLEVTETAFLGDSPQSKTTFAQLDALGVNIALDD 755

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYG 920
           FGT  S LSYL  + F  +K + S +      +   ++++  I + K +   ++A+ +  
Sbjct: 756 FGTGYSSLSYLHELSFSEIKIDKSFLADLEHNQRSLSLVKVAINLGKELNMHVVAEGVET 815

Query: 921 EIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           ++   +L  +GC   Q  +   P+     L+ 
Sbjct: 816 KLIEAKLKSIGCSICQGFYYGKPMSKELFLEW 847



 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/435 (11%), Positives = 120/435 (27%), Gaps = 24/435 (5%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F+  +  LL++         ++ SS +   D         +      V         + +
Sbjct: 7   FVYYLATLLFVAMFWSYNSSVHFSSMEDASDEWGAPLYLYDSA---SVEDIKRPRSDNWK 63

Query: 75  I---EVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVT 131
                 +    R    W  F L        ++ +++ +  L                  T
Sbjct: 64  TLNDNTARFGYRDGSVWLKFEL--PPIKGDDQFLLLDYPLLDHVTVLRSFSDGTSKRWET 121

Query: 132 PSEGFSLDRIPNSDSDVFRI-TINPGAVVTFIMEISTPNLPQIYLWEPNFYKDTVNSFTL 190
                   R   S+  +F I +    + +   +         +++ +            L
Sbjct: 122 GDSKAFSSRYLPSEKFLFPIGSAKYQSELLIGVSSQGTLKIPLFITDRRGEVQRAIYANL 181

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGE 249
             G  +G   L+ I   I  +       +        +        GFL +         
Sbjct: 182 LIGSYVGYMLLMLITSLIISVTTTEKRFVLCAIYVAFIGLLNLQLSGFLFQWVWPDMPRI 241

Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTAS 309
             I+        +   + F+  YL +++   +     F  +   A+   +      + + 
Sbjct: 242 NGIFTLIVIYLSAFFQLAFVESYLSYSKGFFRKLSKIFKWLCATALFLALLPNSYSLLSQ 301

Query: 310 IARITLASIVLYYTYFIIYHGMKGYERAV---LLIPAWILIFIWFIGLWMAITKRL-DND 365
           +  + L    +        +  K     V     + AW+++ I  +   + +   L    
Sbjct: 302 LGVVLLIIACILSVILTFINMRKTKHTEVSLNYFLCAWVVMLIGIVTSTLGVIGILPPTS 361

Query: 366 IIQPALVGGLVLIVILIGFTVI-----QHVLATGYFSQGIFSDGER----QSLAVLGSGD 416
           ++  A     VL V  +   +      +H        + + +  ER    + L    + D
Sbjct: 362 VVNNASAMSSVLAVFFLLSALFDRYNQEHKEKFALTIKSLKASEERAKAERHLVFQATHD 421

Query: 417 IVWDWDIVRDRVTTT 431
            + D    +D +   
Sbjct: 422 SLSDL-PKKDVLFNN 435


>gi|224372921|ref|YP_002607293.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589500|gb|ACM93236.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 740

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 184/430 (42%), Gaps = 42/430 (9%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           KS + ++   + D L+G+PNR   ++ +               ++ +IDID +  +ND+ 
Sbjct: 350 KSQKELMKRVYYDKLSGLPNRNKLIEDIDRY-----------KSLCLIDIDDFSDLNDIF 398

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L+ ++  + +  K    + R+  + F I          + +           
Sbjct: 399 GFEIGDKILILISEVLSKKYKN---VYRIGSDEFAIGFEYNIVEEDLREIVH-------- 447

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
            +++   +I +  S+G +S         ++L+ AE A+  A        + +     +S 
Sbjct: 448 -LDIKYNDIKINFSVGASSMKG------KLLETAETALKLAYKDKVLKYKIYDEKIQQSQ 500

Query: 704 RVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           +  ++  + L   +EN ++   +  ++    +++V  EAL++  +     +S + FM + 
Sbjct: 501 KERLQKLQQLLTILENEDIVPYFQCVVNNK-QQVVKYEALMRIRY-DGKILSPAHFMDLI 558

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E  +    +  M++++  ++  ++       I + IN++  D+ + E  + +  L+ K 
Sbjct: 559 KEFKLYNYFSRIMIKKVFENLDKFK------NIPVSINLSYVDIANEETKKLIYDLLDKD 612

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
               + +     E+  +   ++    +  +++ GI + +DDFG+  S L  + Y+  D +
Sbjct: 613 G--NTNVVFEILETENIEQFDKVIDFIFHVKRKGIKIAIDDFGSGYSNLVNILYLKPDYL 670

Query: 882 KFNGSLMTGSTEKRI-AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + SL+          I++ I+  AK      IA+ +  E     L ++G D  Q  + 
Sbjct: 671 KIDASLIKNIDNIMYFEIIKFIVIFAKKFNIKTIAEYVSDEEKFLILQKLGIDEFQGFYF 730

Query: 941 ASPLGFNSIL 950
             P     ++
Sbjct: 731 CEPRPIEELI 740


>gi|94500467|ref|ZP_01306999.1| signaling repeat/GGDEF domain/EAL domain protein [Oceanobacter sp.
           RED65]
 gi|94427502|gb|EAT12480.1| signaling repeat/GGDEF domain/EAL domain protein [Oceanobacter sp.
           RED65]
          Length = 831

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 178/447 (39%), Gaps = 19/447 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +  K      L  ++    T + N   F  RL   L     +      ++++++  ++++
Sbjct: 378 SRMKYFEMRSLSQSYLYPNTNLGNLSYFSQRLPQNLPEILKNHQ-HVYLVLMNLTGFREV 436

Query: 580 NDVLGI----AVGDDVLVSLTRRIGELLKF--------PDILARLSGNRFGIILISENNS 627
             + G            + L   +                + A    +   ++L++ N+ 
Sbjct: 437 VSLYGPKALTESYQQRTIELENLLRNEKWSIHFTLPSGRQVSAMALPSEQILLLVNVNHH 496

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-H 686
            +I      +       + +    + ++++I +   +    +  E  + A++A+ HA   
Sbjct: 497 DEIELIVDKLYHHSHRDLRIRNIHMPMSSTISYVHISHHH-SLQEQYRKAQVALQHAIVT 555

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  S  +     +R+ + + L  A+   EL +   P   L D ++VG EAL++W  
Sbjct: 556 NQKYCAYSPSLDLAIGERITLIQKLHKAITEDELDIFLQPQFSLFDNKLVGAEALVRWRQ 615

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM--PPIFILINIASKD 804
                IS   F+ +AE+  +I  I+  ++ R    +   +           + IN+++ D
Sbjct: 616 NDGHFISPGVFIPLAEQTGLIFEISKNIIARSFAWLSDIKKHHPNLYQNFNLSINLSALD 675

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +  + L   +Q  +     + ++I L  +ES +M N +     +  L+ +G +L +DDFG
Sbjct: 676 MAQSSLLSFLQTSLFNHDLNANKITLEITESAIMENHDLFIKGIQELQTLGFNLAIDDFG 735

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S + YL  +    +K +   + G    R    I+++I+ +A   ++  +A+ +  + 
Sbjct: 736 TGYSSMLYLKELKAKEIKIDMGFVRGIHTNRVNQKIVQAIVQLANGTDSMTVAEGVECKE 795

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
           +   L  +GCD+ Q  +    L     
Sbjct: 796 EALWLQSIGCDFAQGYYWNPALPIQEF 822



 Score =  125 bits (313), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/394 (14%), Positives = 117/394 (29%), Gaps = 11/394 (2%)

Query: 13  KAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGIS 72
           + F+I  L  + + +   A           V   + +               +    G S
Sbjct: 2   REFIIACLVFVCVTTS-HAQSDFLYIDGTSVALPSPLPS---TSSRATTPPESMLNAGYS 57

Query: 73  RRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTP 132
            +    +      G W    L N  +  L R +V   + L   + +  D    R+     
Sbjct: 58  YQAYAQSIKPSSSGSWHKIRLINPGNETLRRYLVFDVHILKHLNVYLFDRTDLRLEKKLG 117

Query: 133 SEGFSLDRIPNSDSDVFRITINPGAVVTFIM--EISTPNLPQIYLWEPNFYKDTVNSFTL 190
            +  S + + +  +     +I P + +T ++  +   P +    +     +    N+   
Sbjct: 118 LKDISEEEVQDYTAPHLEFSILPKSQLTLLIYKQNDGPGIFPARILSEQEWLQEKNNKRF 177

Query: 191 YRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLP-SGE 249
           + G II V   +A++  + Y ++ +           V   Y S   GF   L  L     
Sbjct: 178 FWGAIIAVLIAMALYNVLVYSMHPNKSYGWYLTFHTVCFFYFSALNGFGFHLWPLQIQVM 237

Query: 250 LLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP-MVTA 308
           L          L   +  F   +L  N+   +   +         +    S + P     
Sbjct: 238 LATNIMFMNFLLIILIANFANHFLFANQNAPRHHKLVLPLSIIAGLGCITSLFVPEYSII 297

Query: 309 SIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIW-FIGLWMAITKRLDNDII 367
               I  A   ++     I     G++ A   + +W        IG+   +     N   
Sbjct: 298 PAFSILQAFASIFGMSIGIASLKSGFKPAKYFVISWACTLAGAGIGMATVLDAIAINIFT 357

Query: 368 QPALVGGLV--LIVILIGFTVIQHVLATGYFSQG 399
             A + G +  L ++ IG             SQ 
Sbjct: 358 LHAFLIGTLGELFLLSIGLASRMKYFEMRSLSQS 391


>gi|296103727|ref|YP_003613873.1| putative sensor protein [Enterobacter cloacae subsp. cloacae ATCC
            13047]
 gi|295058186|gb|ADF62924.1| putative sensor protein [Enterobacter cloacae subsp. cloacae ATCC
            13047]
          Length = 1117

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/567 (18%), Positives = 212/567 (37%), Gaps = 13/567 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+  +     P    + G       G    
Sbjct: 550  EVKQLNEALFQEKERLHITLDSIGEAVLCTDVDMNVTFMNPVAEKMSGWLQTEAIGQP-- 607

Query: 452  WLPYIHINDRDNFRTILDSFV-GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             L  +HI   +    + +       R  ++ +  +         +   I P+S  +G  +
Sbjct: 608  VLKVLHITFGEKGPLMENIHSGDMSRSDIEQDVVLNCRTGGVFDIHYSITPLSTLDGQNI 667

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + +  D+TE +K L  +  +A  D LT + NR SF + L  +L         R  ++ 
Sbjct: 668  GSVLVIQDVTESRKMLRQLSYSASHDALTHLANRVSFENHLKRLLQTVQETRQ-RHALVF 726

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N     
Sbjct: 727  IDLDRFKAVNDTAGHAAGDALLRELASLMLTMLRSSDVLARLGGDEFGLLLPDCNIESAR 786

Query: 631  ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
                  +            R   + AS G      +   +SE++  A++A Y +K+ G  
Sbjct: 787  YIAGRLVHTINDYHFMWEGRLHRIGASAGITLIDENNHQASEVMSQADIACYASKNNGRG 846

Query: 691  HVESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             V  +     R+      + + E   +  +N  + +        + E        ++   
Sbjct: 847  VVTVYEPQQERAHSARSMMSLDEQWHMIKDNHLMMIARSVASPRIPESCNFWLISLRLWT 906

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +   +    F     E  ++ A++  +     R   +   +     + + + +++  L 
Sbjct: 907  SQGEVLEEHAFRSGLAEPELLHALDRRIFSEFFRAYAAPVAKKG---LGVALPLSAAGLA 963

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
               L + +  L+ K       + L  +  VV       +  L +LR +G  + L   G  
Sbjct: 964  SATLIDELLDLLDKGPLPGRLLHLVIAIDVVANPDPNVQTGLQKLRHVGCRVVLSQAGRN 1023

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
              L S+LG    D +  +  ++T          ++  I   A+ +    IA      I +
Sbjct: 1024 MELFSHLGANVADYLMLDAEVVTNVHGNLMDEMMVTIIQGHAQRLGMRTIAGPCNQPIMM 1083

Query: 925  KELTRMGCDYIQDSHVASPLGFNSILK 951
              L+ +G D+I    +  P   + +L 
Sbjct: 1084 DTLSGIGVDFIFGDTIGEPQPLDLLLN 1110



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/390 (11%), Positives = 105/390 (26%), Gaps = 40/390 (10%)

Query: 175 LWEPNFYKDTV---NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGY 231
           LW P          ++  ++ GI +  +    +   + +     S          + +  
Sbjct: 54  LWFPTAIMMVAFYRHAGKMWPGIALACSFGNILASWMLF-----SWSSINPTYTAINVVE 108

Query: 232 ISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYL-HWNRWHAKVGYITFSGI 290
             +    L KL+   +    +         S+ +   +   L H      +        +
Sbjct: 109 AVVGALLLRKLLPWYNPLQNLNDWIRLAIGSALIPPLVGGVLVHLLIPSPEPLRNFLVWV 168

Query: 291 A-----CIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK------GYERAVL 339
                  +A++     + P          L    L      +                V+
Sbjct: 169 LSEAVGALALVPLGLLFKPHYLLRHRDPKLLLETLVTMAVTLVLSWAAIVWLPWPFTCVI 228

Query: 340 LIPAW-----------ILIFIWFIGLWMAITKRLDNDIIQPALVGGLV-----LIVILIG 383
           ++  W           ++  +  + + + I       +        L       +++L+ 
Sbjct: 229 VLLMWSAVRLPRMEAFMVFLVTVMVVSLMIAHN-PEALTTQHTGAMLNAPWLPFLMLLLP 287

Query: 384 FTVIQHVLATGYFSQG-IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
             V+  V+      +  I    ER   A+  S   +    I    +     +   LG + 
Sbjct: 288 ANVMTMVMYAFRAERKHITESEERFRNAMEYSAIGMALVSIDGQWLQANKALCNFLGYSQ 347

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
             +      +       D       L+  V         E R      +  W ++ +  +
Sbjct: 348 TEL--QSLTFQQLTWPEDLHTDLEQLEQLVNGDINTYTLEKRYYTRSGEVVWALLAVSVV 405

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +++G  L +I    DI + K++       
Sbjct: 406 RHADGSPLYFIAQIEDINDLKQTEWVNKRL 435



 Score = 86.2 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+WD+  D ++    +  +  +    +    + W   +   DR +
Sbjct: 436 MERITLANEAGGIGIWEWDLEPDIISWDKRMFELYEIPPH-IKPTWQLWHDTMLPEDRAH 494

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
              +L   +  R    + EFR+R  +     +      + N  G++ R +GI  D+TE K
Sbjct: 495 AEKVLRESLISRL-PFKLEFRIRVKEG-VRHIRSLANRVLNKQGEVERLLGINMDMTEVK 552

Query: 524 KSLE 527
           +  E
Sbjct: 553 QLNE 556


>gi|327252154|gb|EGE63826.1| EAL domain protein [Escherichia coli STEC_7v]
          Length = 747

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E +  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTEAHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 DNDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QVRFPFEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|218699339|ref|YP_002406968.1| putative sensor protein [Escherichia coli IAI39]
 gi|218369325|emb|CAR17083.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli IAI39]
          Length = 1105

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEELFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + +        ++    
Sbjct: 840  VTIYEPQQVAAHSERAVMSLDEQWRMIKENQLMMIAHGVASPRIPQARNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  EGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      ++ +         +LR  G  +     G   
Sbjct: 957  ATLVNELIEQLENSPLPPRLLHLIIPADAILDHAASV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 108/364 (29%), Gaps = 12/364 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNKQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLEG 528
             E 
Sbjct: 546 LNEE 549



 Score = 87.3 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNKQL 427


>gi|323977773|gb|EGB72859.1| GGDEF domain-containing protein [Escherichia coli TW10509]
          Length = 1105

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   + E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAVEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + I E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQADAHIERAAMSIDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWGC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   +    F     +  +  A++  +L    +             + I + ++   L  
Sbjct: 900  EGEIVDEQTFRRSFGDPALNHALDRRVLHEFFQQTAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +      P  + L      V  + E       +LR  G  + L   G   
Sbjct: 957  ASLVNELLEQLENNPLPPRLLHLIIPAEAVFDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNTLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 89.2 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRAHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|205373494|ref|ZP_03226297.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus coahuilensis m4-4]
          Length = 721

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/725 (15%), Positives = 263/725 (36%), Gaps = 37/725 (5%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDF-QVFTA 65
           ++         ++ F L+  +   + + + I+S    LDL +  + YV++        + 
Sbjct: 1   MKLIRNIILFFVIFFSLFPFNLQASTQTVEITSKTTKLDLVNNLQFYVDRDSVIKNDSSI 60

Query: 66  ADIDGISRRIEVSASSIRHR--GDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLG 123
              +   +    + ++        W    L N   + ++  I +    L     FS +  
Sbjct: 61  LKYENQFKDFIHTDAAGDVSNATYWLKTTLKNGEPTPIQFYIEIQKPHLSYISVFSKERD 120

Query: 124 SRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNFY 181
              ++  T       DR       VF +T+          +IST +     + LWEP  +
Sbjct: 121 QLVLLDETGYAYPFSDRKIAHRHFVFPLTLAGNEQKDVYFKISTDSFFQAPVILWEPETF 180

Query: 182 KDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSK 241
            +      +  GI  GV   + I+ +  Y+  R    +             +I  GF S+
Sbjct: 181 LEQQYKNQMVFGIYYGVMIAMIIYNSFLYISLRQKTYLYYILFLTGFTVLQAIWDGFASQ 240

Query: 242 LVNLPSGELLI-WRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMS 300
            +      + +   + + I  S   ++F   +L  +    K+  +    +   +I+F + 
Sbjct: 241 WLWSELPWIALRSNSLAIIFTSLFSLLFAKHFLQLDTLSPKLSKVIDHFVVISSIVFIIP 300

Query: 301 FYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFI-------- 352
           F   +  +++    ++++ L     I+         A   + AW L+F            
Sbjct: 301 FLLNISLSTMLSTLVSAVFLVLNIAILISVRTRSRAAKFYLSAWGLLFTGIALNLLAAFK 360

Query: 353 ---GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS- 408
                ++ +       +++  ++   +   I +     +      +    +     + S 
Sbjct: 361 LLPLTFITLYGPKIGGLVEVFVLSLALADQINMVKEEKRREERKYFIQTLLQKSFNQMST 420

Query: 409 -----LAVLGSGDIVWDWDIVRDRVTT----TPDIATILGLASGSMHGPIRNWLPYI--- 456
                L +  + D + +     + V            I   A  S+         ++   
Sbjct: 421 YTDINLTIDSALDSLMEVTHFENGVFVKQVSDKKWTIISNKAEHSISFDPLKLYKFMDKP 480

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           +   +       +  V    G L    ++++    F     +   +++    +L      
Sbjct: 481 YPLKQAPNEMEFNQVV---LGLLIIPIQLKSLTGMFMVFTEKEDKLNDQEATVLAESFQH 537

Query: 517 NDIT--EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             ++  +Q +S E +  +A  D+LT + NR+ F ++    +   +   +L  ++++ID+D
Sbjct: 538 LFVSKMDQIESYESLKRSAMFDHLTNLYNRKFFFEKAEE-IYRVSNQLDLPLSLLLIDMD 596

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +KKIND  G   GD+VL+ ++ ++ E  +   I+ R  G  F  IL + +         
Sbjct: 597 YFKKINDTFGHMKGDEVLMYVSSKLNEAFRDKGIIGRYGGEEFIAILQNADEIESYTFAE 656

Query: 635 IAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
                 +  P  L     I ++ SIG ++   S  T S++++ A+ ++Y+AK+ G N V 
Sbjct: 657 NLRMTILDHPFQLPEGITIPLSLSIGISTGIKSTKTISQLVQEADESLYYAKNNGRNRVI 716

Query: 694 SFRVS 698
              ++
Sbjct: 717 HKGMN 721


>gi|309778839|ref|ZP_07673610.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
 gi|308922363|gb|EFP67989.1| GGDEF domain-containing protein [Ralstonia sp. 5_7_47FAA]
          Length = 446

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 2/331 (0%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           +    +     V              +Q V A     + + +  +R +  + G+G   +D
Sbjct: 87  QDGTTVWVQTDVAVAHDHGNQHLVVQMQDVTARRLALESLRASEQRLAYVLDGAGLGTFD 146

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           W      V+     A +LG     +      W   +H  D       +   +       +
Sbjct: 147 WSTRARHVSFNRRTADMLGYEPTDLSNDPDAWFAMVHPQDAALSARRIYRHMRGDADSFE 206

Query: 481 YEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            E R+RA   Q+ W+  R R    ++ G   R  G   D+T+++ +L+     A  D LT
Sbjct: 207 IEQRMRARHGQWIWVAARGRVTERDARGMATRVSGTLLDVTKRRTALDQAHHLALHDPLT 266

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PN +   DRL   +  +      +  V+ ID+D++K +ND  G AVGD VL +   R+
Sbjct: 267 DLPNARLLRDRLFVAIQAARRARG-QVAVVFIDLDRFKPVNDEYGHAVGDLVLKATAMRL 325

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+  D +ARL G+ F  +L        +      + + +  P  +    +++  S G
Sbjct: 326 RSGLRASDTVARLGGDEFVAVLTHCATRDDVTQTVERLIEQLQTPFRVEGHVLSLGVSAG 385

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            A + +    +  +++NA+ AMY  K  GGN
Sbjct: 386 VALYPTDGHDAQTLIRNADAAMYEVKRAGGN 416



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  D      A+  S   +         +     +  + G  + ++    R+     H +
Sbjct: 1   MLEDDHLYKAAIEHSPIGIGLCAPEGRFLDVNRALCALTGHEAQAL--RKRDLFDLCHPD 58

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             +  R  ++S +  +R  L  E R+   D    W+   +    +        +    D+
Sbjct: 59  HTERTRHGIESLLTGQRDALSMETRLVRQDGTTVWVQTDVAVAHDHGNQ--HLVVQMQDV 116

Query: 520 TEQKKSLEGIL 530
           T ++ +LE + 
Sbjct: 117 TARRLALESLR 127


>gi|307305944|ref|ZP_07585690.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
 gi|306911437|gb|EFN41863.1| diguanylate cyclase/phosphodiesterase [Shewanella baltica BA175]
          Length = 403

 Score =  275 bits (704), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 169/396 (42%), Gaps = 7/396 (1%)

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
            TV ++ ID   +IN   GI+VGD +L +    +         + R  G  F +   S  
Sbjct: 1   MTVALVKIDNLSQINAAFGISVGDAILKAFATELKNRFGHHAKIYRFRGASFALEFTSLP 60

Query: 626 NSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                 + A+ +R+ I   + L  E++I           + +K +  +  +   +A+   
Sbjct: 61  LISP-ENLALQLRERIPTNLQLKHEQQIEYHLECRVGCSSGNKASPQQAAEQCLIAIKQT 119

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                  V    + +   +    K  +  A++++ L +   P +R  D  I+  EAL + 
Sbjct: 120 TQASPVMVYYIGLINNLLEASSQKAKIRDALKHNRLEMWLQPKVR-ADGHIISFEALARM 178

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I  + F+ I E   +     + +  ++ + I SW     +  + I  N++ +D
Sbjct: 179 FDEDGTMIMPNTFIPIIESSQLQAIFAIKVFRQLLQLIRSWPKNVPL--VRIAFNLSGQD 236

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +L +   + +             +++  +E+ V    + +   L  L ++G+S+ +DDFG
Sbjct: 237 ILSDRFFKVLIQTYMNHPELIPLLEIEITETSVFSTHKETGRRLNTLARMGVSIAIDDFG 296

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  + LS L  I  DT+K +   ++  G +E+   I+ + I +AK+++  +IA+ I  E 
Sbjct: 297 TGHASLSQLIDISADTIKIDRRFVSQMGISERHTQIVNAAILLAKSLKLNVIAEGIETEA 356

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
            + +LT +GC+  Q      P   N  LK  + + P
Sbjct: 357 QLLQLTALGCEQFQGYLFGKPAPANLWLKTFQMQTP 392


>gi|332874297|ref|ZP_08442216.1| cyclic diguanylate phosphodiesterase domain protein [Acinetobacter
           baumannii 6014059]
 gi|332737522|gb|EGJ68430.1| cyclic diguanylate phosphodiesterase domain protein [Acinetobacter
           baumannii 6014059]
          Length = 449

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 121/265 (45%), Gaps = 3/265 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         ++ +L LA+   +  L Y P +    E+++G EAL++W HP  G
Sbjct: 179 CISIYTMQLEIQIESSMEHNLRLALTKQQFELFYQPQVN-SSEKLIGAEALLRWHHPVLG 237

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I + EF+  A    ++  I  ++L +  + +  W  +     + + INI++   + +  
Sbjct: 238 YIPTKEFIPAAATFGLMPEIGEWVLAQACKVLQDWSKKEETKDLTLSINISADHFMQSNF 297

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +  L+ +  ++PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 298 EHTVIGLVQRYDFNPSRLILEITENIALNNCASMIEKMHFLSKHGIQLSLDDFGTGYSSL 357

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 358 SYLQKMPIKQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETAEQFSAFK 417

Query: 929 RMGCDYIQDSHVASPLGFNSILKLL 953
             GC   Q      P+  N  +K L
Sbjct: 418 SNGCTEFQGYLWGCPMSLNEFIKQL 442


>gi|238923509|ref|YP_002937025.1| hypothetical protein EUBREC_1129 [Eubacterium rectale ATCC 33656]
 gi|238875184|gb|ACR74891.1| hypothetical protein EUBREC_1129 [Eubacterium rectale ATCC 33656]
          Length = 1021

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 168/429 (39%), Gaps = 26/429 (6%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            K+          D +TG+  R++F +   + ++     D     V   DI +   IN+  
Sbjct: 606  KARAEYEYRLNFDQVTGLRKRETFNNLGESYVE----YDCSFMGVFASDIIRLSDINEKF 661

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G   G+  L  +   I  +    D + R   +   +      +          +R+S+  
Sbjct: 662  GYMAGNARLRMVADVIRGVFTGYD-IYRYEQDEIVVFCKDI-DKKSFMGLVRIVRESLD- 718

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                   ++ V+ SIGF+   + K   +  L    L     K            S     
Sbjct: 719  -------DLDVSVSIGFSW--TDKPDIARQLSEVRLMYDIEKDAK-------LKSLDSIM 762

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R  + +D+   +E     + Y P +       VG EALI++    +G +    F+ I EE
Sbjct: 763  RNKVFKDVVSEIEKGSFMVYYQPKVDSRTGITVGAEALIRFFDEAYGVVGPIHFIEILEE 822

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
                  I+LF+L+ + +     R  ++   + + +N +   L   +L + ++ ++++   
Sbjct: 823  NRCSHLIDLFVLDEVCK-AQKLRCISDRRVVPVSVNFSKNTLEYADLLDHVKEIMNRYDL 881

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                +++  +ESV   +      +   L  +G  L++DDFGTK S L  L   PF   K 
Sbjct: 882  PEGLVQIEITESVGDMDIVLINNIAQSLISMGFRLSMDDFGTKYSNLEMLFKFPFSIAKI 941

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL+      EK   +L+ +I M   +    +A+    E  ++ L + GC+ IQ    +
Sbjct: 942  DRSLVKNLESNEKSRIMLKHLISMIMELGIECVAEGAENEEQVRLLQQFGCNIIQGYFYS 1001

Query: 942  SPLGFNSIL 950
             P+  +   
Sbjct: 1002 KPVTLDVFT 1010



 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 145/381 (38%), Gaps = 40/381 (10%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATILGLASGSMHGPIRNWLPYIHI 458
           E   +    + + ++++ +  D          +P   T+           I  ++     
Sbjct: 21  ELMKIVAENNHERMFEYYVEDDEAYIFKIVNSSPAQETVYPF----FKQNIDTYMSECPA 76

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  + F+  LD  +  R  R  ++    + D +   + + +  + + +  +   +G+  D
Sbjct: 77  DSIECFKKQLDKCLL-RPMRTAFQLSFISEDGKSRPVEMYMVSIPDLDKKVCMVVGVMFD 135

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I ++K  L         D+LTG  N  +F ++ T+++         +   +++D+D +K 
Sbjct: 136 IRDEKGLL---------DSLTGTYNHLAFENKCTSLI----RQKGTKLLFVMLDVDDFKI 182

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD VL    + + E +    I+ RL G+ F  I+    +S  + +F + + 
Sbjct: 183 VNDTLGHNVGDRVLSQTGQVLKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLS 242

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
             +   I     ++  +ASIG  +    ++T  ++   A+ AMY++K +G N +  F   
Sbjct: 243 GRLKNII----FDMEYSASIGMTTGDDRELTFKDLYYEADQAMYYSKRQGKNRISFFNSI 298

Query: 699 SFRSDRV-------MIKEDLCLAVENSELYLVYHPII----RLMDEEIVGLEALIQWDHP 747
                 V        I +  C   +         P            IV +   I+ +  
Sbjct: 299 RKNDITVPHNSCAPSITDVSCRMSDREIFSYDEMPDYILAVDEESRRIVFVNKAIR-NSS 357

Query: 748 KWGNISSSEFMLIAEELCMIK 768
                   EF+    E   I 
Sbjct: 358 VMTASQIDEFISKPFEDGFID 378


>gi|94264880|ref|ZP_01288654.1| GGDEF:EAL [delta proteobacterium MLMS-1]
 gi|93454650|gb|EAT04918.1| GGDEF:EAL [delta proteobacterium MLMS-1]
          Length = 695

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 171/433 (39%), Gaps = 33/433 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +   A  D LTG+ NR +F   +            L       +ID ++ IND+ 
Sbjct: 284 RLSSELKTTATTDRLTGLANRFAFD--IDQEKLQRPLLLLL-------NIDDFRHINDLY 334

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI----LARLSGNRFGIILISENNSLKIADFAIAMRK 639
           G + GD VL SL   + + L  P        RL G+ FGI+L    +          +  
Sbjct: 335 GTSTGDYVLASLAALLQDNLPTPASAWARCYRLGGDDFGIMLDEPADFNPEELADKLLSS 394

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV-- 697
                    ++ I ++ SIG +           +L+ A+LA+   K         +    
Sbjct: 395 LHENEYVYHDQPIRISISIGISRQRP-------LLETADLALKEIKKHKRFRYLLYSDEL 447

Query: 698 --SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +  + I + +  A++   + + Y PII   + +    E L++  + +   +S  
Sbjct: 448 KLQERIAANLEILQTVRRALDRDNILVYYQPIIDNRNGQTSKYECLVRLRNAEGAILSPG 507

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ + +E  +   I   ++ +   D+   R           +N++  D+LD E+ + + 
Sbjct: 508 YFLDVVKESPLYPEITKQVVAKSFADMAGCRCGF-------SLNLSVADILDTEVRDYIL 560

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            +I+    +  R+     E+  M N E  R  +  ++  G  + +DDFG+  S  +++  
Sbjct: 561 TMIAAQPETARRLTFEILENEGMENVEVVRGFIDEVKAAGCQIAVDDFGSGYSNFAHILT 620

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + SL+    +      ++ +I+   + +    +A+ ++       +  M  D
Sbjct: 621 LKVDILKIDASLIRNLDDDPQARILVHTIVDFCRKLGIKTVAEFVHSAPVHHTVKEMEID 680

Query: 934 YIQDSHVASPLGF 946
           Y Q  ++  P  F
Sbjct: 681 YSQGFYLGEPGPF 693


>gi|167887770|gb|ACA09399.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 311

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 111/231 (48%), Gaps = 5/231 (2%)

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +L L Y PI+ L  ++IVG EAL++W HP+ G +   +F+ + E   ++  I  ++L 
Sbjct: 2   RGQLELHYQPIVDLRSDQIVGAEALLRWRHPRLGLLLPGQFLPLVESSGLMPEIGAWVLG 61

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  WR      P  + +N+++  +   +    ++ +++        +++  +ESV
Sbjct: 62  AACRQMREWR-MLAWQPFRLAVNVSASQV-RPDFDGWVKGVLADAELPAESLEIELTESV 119

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
             G+P      L  LR+IG+    DDFGT  S L +L   P  T+K + S + G     +
Sbjct: 120 AFGDPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSFVAGLADDHR 178

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
              I+RS+I +A  +   ++A+ +     +  L +  CD  Q    A P+ 
Sbjct: 179 DRTIVRSVIQLAHGLGMDVVAEGVETPTSLALLRQAACDTGQGFLFAKPMP 229


>gi|187926360|ref|YP_001892705.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J]
 gi|241665847|ref|YP_002984206.1| diguanylate cyclase [Ralstonia pickettii 12D]
 gi|187728114|gb|ACD29278.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J]
 gi|240867874|gb|ACS65534.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12D]
          Length = 446

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 2/331 (0%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
           +    +     V              +Q V A     + + +  +R +  + G+G   +D
Sbjct: 87  QDGTTVWVQTDVAVAHDHGNQHLVVQMQDVTARRLALESLRASEQRLAYVLDGAGLGTFD 146

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           W      V+     A +LG     +      W   +H  D       +   +       +
Sbjct: 147 WSTRARHVSFNRRTADMLGYEPTDLSNDPDAWFAMVHPQDAALSARRIYRHMRGDADSFE 206

Query: 481 YEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
            E R+RA   Q+ W+  R R    ++ G   R  G   D+T+++ +L+     A  D LT
Sbjct: 207 IEQRMRARHGQWIWVAARGRVTERDARGMATRVSGTLLDVTKRRTALDQAHHLALHDPLT 266

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            +PN +   DRL   +  +      +  V+ ID+D++K +ND  G AVGD VL +   R+
Sbjct: 267 DLPNARLLRDRLFVAIQAARRARG-QVAVVFIDLDRFKPVNDEYGHAVGDLVLKATAMRL 325

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
              L+  D +ARL G+ F  +L        +      + + +  P  +    +++  S G
Sbjct: 326 RSGLRASDTVARLGGDEFVAVLTHCATRDDVTQTVERLIEQLQTPFRVEGHVLSMGVSAG 385

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
            A + +    +  +++NA+ AMY  K  GGN
Sbjct: 386 VALYPTDGRDAQTLIRNADAAMYEVKRAGGN 416



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  D      A+  S   +         +     +  + G  + ++    R+     H +
Sbjct: 1   MLEDDHLYKAAIEHSPIGIGLCAPEGRFLDVNRALCALTGHEAQAL--RTRDLFDLCHPD 58

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
             +  R  ++S +  +R  L  E R+   D    W+   +    +        +    D+
Sbjct: 59  HTERTRHGIESLLTGQRDALSMETRLVRQDGTTVWVQTDVAVAHDHGNQ--HLVVQMQDV 116

Query: 520 TEQKKSLEGIL 530
           T ++ +LE + 
Sbjct: 117 TARRLALESLR 127


>gi|118474180|ref|YP_891801.1| diguanylate cyclase/phosphodiesterase [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118413406|gb|ABK81826.1| diguanylate cyclase/phosphodiesterase [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 636

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 177/416 (42%), Gaps = 23/416 (5%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + DNLT +P+R      +  +           P ++VIDID +  I+D  G  + + VL+
Sbjct: 232 YIDNLTNMPSRYKLERDIADL---------KHPRIIVIDIDDFSNISDYYGDMIANRVLI 282

Query: 594 SLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            ++  I E  K   +       ++F ++  SE +  +    A  +       I  +  E 
Sbjct: 283 EVSSAIKEFAKINGLSAYNFRLDKFVLLEDSEFDIDRYEAIANDLIDKFKGYIIRINDEY 342

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED-- 710
                I         +   + +K A +A+  AK    +++  F       + +  K    
Sbjct: 343 GENILIEICCSIGFCLDYKDPIKKALMALKRAKQEHKDYLCYFTYMDTTKEYIRRKRHSH 402

Query: 711 -LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            +  A+ N+++   + PI    D+ ++  EAL++  + + G +    F+  ++ +     
Sbjct: 403 IISKAIMNNQVVPYFQPIFD-KDKNVIKYEALVRIVNNEDGVLLPGIFIKDSKLIKRYAY 461

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   ++E+              P + I +NI+  D++D ++   +   +S+      +I 
Sbjct: 462 ITKTIIEKCFLQAK------LNPNVVISVNISIGDMIDGDVSAFIIEKLSEMQV-AKQIV 514

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
               E   M +P+R +  + ++R++G  + +DDFG+  S  SY+  I  D +K +GS++ 
Sbjct: 515 FEVLEDENMEDPDRVKSFIDKVRRMGSKIAIDDFGSGYSNFSYILKIKPDYLKIDGSIIK 574

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +  E    ++ +I+  AK +    IA+ +Y E   K    +G D  Q  ++  P
Sbjct: 575 RVSTQEDSYIVVSAIVAFAKKLGIKTIAEFVYNESIFKRCIEIGVDEFQGFYLGEP 630


>gi|323159357|gb|EFZ45342.1| EAL domain protein [Escherichia coli E128010]
          Length = 747

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 188/459 (40%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMLMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                I    F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELIGPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 QARFPVEVSLLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|237732481|ref|ZP_04562962.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908020|gb|EEH93938.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 728

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 179/456 (39%), Gaps = 27/456 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ +I +    T Q+         AF D +  IPN ++    L                +
Sbjct: 280 IVNFIAVLA--TRQRFVTRRNHRLAFFDPMVHIPNLRALNRDLKNA---------PWSVL 328

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    GI +       L + I  LL+  + + +LSGN   +   +E +  
Sbjct: 329 CFLGVPGMELLVKNYGIMLRIQYKQKLAQWITPLLEQDEHVYQLSGNDLILRFNTELHQE 388

Query: 629 KIADFAIAMRKSIAMPINLLEREIT--VTASIGFASWTSSKITS--SEMLKNAELAMYHA 684
           +I      +++            +   V  S  +     + I     E+   AEL++   
Sbjct: 389 RIEALDRHIKQF---RFVWDGMPLQPQVGISFCYVRSPVNHIYLLLGELSTIAELSLATN 445

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                       +     D+V +   +  A+EN+  +L   PI  +  +  V  E L++ 
Sbjct: 446 SPENLQRRGVMHLQRDLKDKVAMMNRIQQALENNRFFLKAQPIFGVRGD--VYHEILLRL 503

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +      I+   F+ +A E  +   I+L+++E   + +   R++         IN++   
Sbjct: 504 EGDDGETIAPDNFLPVAHEFGLSSRIDLWVIENTLKFMAQNREKMPAH--RFAINLSPTS 561

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +    L   +  L++K      ++    +ES  + N E+++  L +L+ +G  + +DDFG
Sbjct: 562 VCRARLPNDINQLLNKYKVEAWQLIFEVTESNALTNAEQAQATLLQLQSLGCQIAIDDFG 621

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+     ++A+ +  E 
Sbjct: 622 TGYASYARLKNVNADILKIDGSFIRNIVSNSLDYQIVASICHLARMKRMLVVAEYVESEE 681

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFP 958
               +  +G DY+Q   +  PL  +     L+++ P
Sbjct: 682 IRSAVISLGIDYMQGYLIGEPLPLSET---LEKQVP 714


>gi|325528410|gb|EGD05546.1| putative cyclic-di-GMP signaling protein [Burkholderia sp. TJI49]
          Length = 295

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 146/296 (49%), Gaps = 11/296 (3%)

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS------KITSSEMLKNAELAMYH 683
               A  ++ ++  P     + + ++ASIG A +             S +L+ A+ A+  
Sbjct: 1   AGALARRLQAAVREPYVYHGQPVHLSASIGIALYPDERPPSHRAQHHSPLLRRADHALAQ 60

Query: 684 AKHRGGNH--VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  GGN     +       ++R+ ++ DL   V N E  L + PI R     +VG+EAL
Sbjct: 61  AKASGGNALAFHTPVDDPADAERLKLEADLYDGVRNGEFSLHFQPITRSQSGAVVGVEAL 120

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HP  G +  + F+ +AE + +I  +  ++L+     +++W  Q      ++ +N++
Sbjct: 121 IRWRHPVHGLVPPATFIPLAESIGLINYLGNWVLKAACMQLVAWDRQGLALQ-YVAVNVS 179

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            +   D    + ++  I+ T   P RI L  +ES++M +P  ++ LL  L ++GI   +D
Sbjct: 180 PQQFRDPRFTQSVREAITLTGIDPRRIVLEITESLLMHDPAHAKELLEELTELGIRFAID 239

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           DFGT  S L+YL   P   +K + S +     +    AI+ +++ +A+ ++  ++A
Sbjct: 240 DFGTGYSSLAYLQRFPLAKLKIDRSFVENLLTSRNDRAIVSAVVGLAQTLDLELVA 295


>gi|323968201|gb|EGB63610.1| GGDEF domain-containing protein [Escherichia coli M863]
 gi|327253199|gb|EGE64853.1| hypothetical protein ECSTEC7V_2452 [Escherichia coli STEC_7v]
          Length = 1105

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   + E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAVEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + I E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQHADAHSERAAMSIDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWGC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +        F     +  +  A++  +L    +             + I + ++   L  
Sbjct: 900  EGEIFDEQTFRRSFSDPALNHALDRRVLNEFFQQTAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      V  + E       +LR  G  + L   G   
Sbjct: 957  ASLVNELIEQLENSPLPPRLLHLIIPAEAVFDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNTLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|291528332|emb|CBK93918.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale M104/1]
          Length = 1021

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 166/429 (38%), Gaps = 26/429 (6%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            K+          D +TG+  R++F +   + ++     D     V   DI +   IN+  
Sbjct: 606  KARAEYEYRLNFDQVTGLRKRETFNNLGESYVE----YDCSFMGVFASDIIRLSDINEKF 661

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G   G+  L  +   I  +    D + R   +   +      +          +R+S+  
Sbjct: 662  GYMAGNARLKMVADVISGVFTGYD-IYRYEQDEIVVFCKDI-DKKSFMGLVRIVRESLD- 718

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                   ++ V+ S GF+   + K   +  L    L     K            S     
Sbjct: 719  -------DLDVSVSTGFSW--TDKPDIARQLSEVRLMYDIEKDAK-------LKSLDSIM 762

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R  + +D+   +E     + Y P +       VG EALI++     G +    F+ I EE
Sbjct: 763  RNKVFKDVVSEIEKGSFMVYYQPKVDSRTGITVGAEALIRFFDEAHGVVGPIHFIEILEE 822

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
                  I+LF+L+ + +     R  ++   + + +N +   L   +L E ++ ++++   
Sbjct: 823  NRCSHLIDLFVLDEVCK-AQKLRCISDRRVVPVSVNFSKNTLEYADLLEQVKEIMNRYDL 881

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                +++  +ESV   +      +   L  +G  L++DDFGTK S L  L   PF   K 
Sbjct: 882  PEGLVQIEITESVGDMDIVLINNIAQSLISMGFRLSMDDFGTKYSNLEMLFKFPFSIAKI 941

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL+      EK   +L+ +I M   +    +A+    E  ++ L + GC+ IQ    +
Sbjct: 942  DRSLVKNLESNEKSRIMLKHLISMIMELGIECVAEGAENEEQVRLLQQFGCNIIQGYFYS 1001

Query: 942  SPLGFNSIL 950
             P+  +   
Sbjct: 1002 KPVTLDVFT 1010



 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 127/298 (42%), Gaps = 28/298 (9%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATILGLASGSMHGPIRNWLPYIHI 458
           E   +    + + ++++ +  D          +P   T+           I  ++     
Sbjct: 21  ELMKIVAENNHERMFEYYVEDDEAYIFKIVNSSPAQETV--YPV--FKQNIDTYMSECPE 76

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  + F+  LD  +  R  R  ++    + D +   + + +  + + +  +   +G+  D
Sbjct: 77  DSIECFKKQLDKCLL-RPMRTAFQLSFISEDGKSKPVEMYMVSIPDLDKKVCMVVGVMFD 135

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + K  L         D+LTG  N  +F ++ T+++         +   +++D+D +K 
Sbjct: 136 IRDVKGLL---------DSLTGTYNHLAFENKCTSLI----RQKGTKLLFVMLDVDDFKI 182

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD VL    + + E +    I+ RL G+ F  I+    +S  + +F + + 
Sbjct: 183 VNDTLGHNVGDRVLSQTGQVLKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLS 242

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             +   I     ++  +ASIG  +    ++T  ++   A+ AMY++K +G N +  F 
Sbjct: 243 GRLKNII----FDMEYSASIGMTTGDDRELTFKDLYYEADQAMYYSKRQGKNRISFFN 296


>gi|312198842|ref|YP_004018903.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311230178|gb|ADP83033.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 793

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/448 (23%), Positives = 181/448 (40%), Gaps = 20/448 (4%)

Query: 510 LRYIGIANDITEQKKSLEGIL----CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +R +    D T     +E         AF D LTG+ NR  F DRL   L       N R
Sbjct: 336 IRQMITMADNTNLVTRVEEDRLALRRQAFHDPLTGLANRALFADRLAQALARRDRAPN-R 394

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             ++  D+D +K IND LG A GD++L     R+   ++  D +ARL G+ F I+L    
Sbjct: 395 LALLYCDLDDFKHINDALGHAAGDELLRVTAARLLGAVRGSDTVARLGGDEFAILLEPLA 454

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK--ITSSEMLKNAELAMYH 683
           +       +  +  +I  PI + + E TV AS+G          I+   +L  A++AMY 
Sbjct: 455 D--DPEQISRRVGDAIRAPITVADSECTVRASLGLVVVEPDSGPISPEALLHRADVAMYT 512

Query: 684 AKHRGGNHVESF-----RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           AK      +  +        S  + R  +   L        L + Y PI+ L     V  
Sbjct: 513 AKTNAAGTLTIYGPELLGPRSPSALRAALGAALRGDRAGGTLDVDYRPIVDLASRVTVAH 572

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EA + W HP  G +  S  +++A    ++ A++  +L          R QA   P+ + +
Sbjct: 573 EARLTWMHPDLGPVQPSRLVVVARSAGLVPALDSQLLRAACGHASVLRGQAGG-PVPVHV 631

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
            I+++   D      +   +  T  SP  + L    +    +   +   L  LR +G+S+
Sbjct: 632 VISAERFADEATTREVLEALDVTGTSPGDLVLGVEATSQAPDLAAAARELDHLRALGMSV 691

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-----TGSTEKRIAILRSIIPMAKNIETTI 913
           +L   G   + L+ L  +P D V  + S       +    +   +L +++   + +  T+
Sbjct: 692 SLAHLGRYDTSLAALRVLPADIVVLDPSFTEVVVGSRHEPRTAILLNALLTAVRQLGLTV 751

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +A  +  E     +  +GC         
Sbjct: 752 VAAGVDDEAAAARVRELGCALASGRLFG 779


>gi|255322420|ref|ZP_05363565.1| cyclic diguanylate phosphodiesterase [Campylobacter showae RM3277]
 gi|255300328|gb|EET79600.1| cyclic diguanylate phosphodiesterase [Campylobacter showae RM3277]
          Length = 641

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 190/432 (43%), Gaps = 36/432 (8%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            +   +    ++D+LTG+PN+ +    L  +           P ++++DID+++K+N+  
Sbjct: 227 ANNAEMQKRLYRDSLTGLPNKTALERDLEAM---------KSPKIIIVDIDEFRKMNNYF 277

Query: 584 GIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G AV D +LV +T+   +     +  + R+  ++F  I  +     +  D A  +  +I 
Sbjct: 278 GTAVCDRILVRMTQISQKFADDNNMTVYRVGPDQFAFIEDAAFFIDRYEDLATELLDNIK 337

Query: 643 MPINL------LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             +         + EI +  ++GFA         ++  K A +A+  AK  G ++   F+
Sbjct: 338 GLVVDITALDGEQSEIEIHCTVGFAL------DETDTFKKAMVALEFAKQSGKDYFCYFK 391

Query: 697 VSSFRSDRVMIKED---LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                            +  A+ N  +   Y PI    +++IV  E LI+  +     IS
Sbjct: 392 NIDDTPQYAEQITRSNMIRNAIINDRIVPFYQPIFN-KEKQIVKHETLIRIQNSN-EIIS 449

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            S F+ +++ +     I   ++E+  + I         P   I +N++ +D+ D ++   
Sbjct: 450 PSVFLEVSKRIKRYTDIEKMLIEKSFKLIAD------RPDAVISVNLSGRDMTDGDVSVF 503

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   ++K      R+     E   + N ER    + R+R++G+ + +DDFG+  S  SY+
Sbjct: 504 IIEKLNKYKV-AGRVIFEILEDENVENIERIGTFIERVRRMGVKIAIDDFGSGYSNFSYI 562

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +GS++      E   AI  +II  AK ++ T+IA+ +  +        +G
Sbjct: 563 LKLKPDCIKIDGSIIKNIDTSEDSRAIAGAIIAFAKKLDITVIAEFVRSKEVFDACVELG 622

Query: 932 CDYIQDSHVASP 943
            D  Q  ++  P
Sbjct: 623 VDEFQGFYLGEP 634


>gi|207724869|ref|YP_002255266.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
 gi|206590095|emb|CAQ37056.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum MolK2]
          Length = 443

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 169/419 (40%), Gaps = 29/419 (6%)

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-----ILAR 611
            S         +++I  D + +    LG     +V+V    R+  L          ++ R
Sbjct: 6   QSGPSGGGVGALLLIGFDHFAEAAASLGPLAARNVMVECASRLQALCPQAAGDAAPVVGR 65

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
           +    F +   +  ++  + D A  +  S+  P      E+  + SIG   +      ++
Sbjct: 66  IGPETFAVASAAFASAQAVHDLARRISASLTRPFITAGYELACSCSIGMTMFDGPPADTA 125

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRV----------------SSFRSDRVMIKEDLCLAV 715
            +++ A+ A++H +H G      +                  +   S+   +   L  A+
Sbjct: 126 RLIEQADRALFHVQHGGEQSPAMYAPAAPTPGAEGVAADTGANDPVSEHPRLAAQLRHAL 185

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
              +  L   P + L++ +IVG E L++W  P+ G ++ ++F+ I E+   I+ +  ++L
Sbjct: 186 TRRQFSLNLQPQLSLVNGQIVGYEFLLRWISPELGGVAPADFLPILEQTGGIREVGHWVL 245

Query: 776 ERIARDIISWRDQ-------ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           +  A+ +   + +       A  P +   +N++   LLD +L + ++ + ++     +R+
Sbjct: 246 DNAAQMLAGLQQEEAERAGTARQPDLLAAVNLSDAQLLDPQLSDTVRDIAARHAVPTTRL 305

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               SE  ++   E +R  +  L   G  + ++DFG     L  L     D VK +  ++
Sbjct: 306 VFEVSEHTLLRAGEAARQAVDALHGCGARVAVEDFGATAHSLDCLAQFRPDLVKLDRCVV 365

Query: 889 TG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +  +     + LR ++  A +    + A  +     ++ L    CD IQ   ++ P   
Sbjct: 366 SAVTDAGDDSALRHLVAAAHDAGVPVTATRVETAAQLQALRACRCDVIQGYLLSQPFPA 424


>gi|157371778|ref|YP_001479767.1| diguanylate cyclase/phosphodiesterase [Serratia proteamaculans 568]
 gi|157323542|gb|ABV42639.1| diguanylate cyclase/phosphodiesterase [Serratia proteamaculans 568]
          Length = 750

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 174/437 (39%), Gaps = 23/437 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+ S       A QD + G+PN ++    LT  L           T+  + + +   +
Sbjct: 327 TRQRLSHARAQSAALQDPVIGLPNLRALKRDLTLSL---------PSTLCFLRVSELDLL 377

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +   G+ +       L   + ++L   + +  L G    + +  E++  K+     A+ K
Sbjct: 378 SRNYGMQLRIRFKQQLAALLHQVLAPGEGVYHLPGYDLLLRVDGEDSEEKVLQIYHALEK 437

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEML----KNAELAMYHAKHRGGNHVESF 695
                +      +     +G+ S  +       +L      AE+++   K          
Sbjct: 438 F---RLIWNGLPLHPPLGLGYCSVNADFEHLYLLLGELSSLAEVSLTSGKPES-VQNGGQ 493

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V      +V +   +  A++N    L+  PI+ L  +     E L++        IS +
Sbjct: 494 WVQEEIKRKVELLHGVQHALDNDGFILMAQPIVGLRGDR--YHEILLRMRDTCGEIISPN 551

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +A E  +   ++L++L    + +  +R +   P     +N++   L    L   + 
Sbjct: 552 DFLPVAHEFGLAYRLDLWVLRNTLKFMDLYRAEL--PSARFAVNLSPSSLCRPMLRHDVN 609

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +L+ +    P ++ L  +ES ++ +   +   L  LR+IG  + LDDFGT  +    L  
Sbjct: 610 SLLEQYQIEPYQLTLEVTESHLLQDTAYAGANLQALREIGCRIALDDFGTGYASYDRLKM 669

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D +K +GS +           ++ SI  +A+     I+A+ +     +  L  +G D
Sbjct: 670 LPVDMLKIDGSFVRDMLTNPVDFQVITSICKVARMKRLAIVAEYVESMEQLVALKGVGVD 729

Query: 934 YIQDSHVASPLGFNSIL 950
           Y+Q   +  P    ++L
Sbjct: 730 YMQGYFIGEPQPLLALL 746


>gi|307721869|ref|YP_003893009.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979962|gb|ADN09997.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM
           16294]
          Length = 552

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/432 (17%), Positives = 164/432 (37%), Gaps = 28/432 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           + K   + I      + +T +PNR    + + T+            ++++I+ID +  IN
Sbjct: 140 DLKDKKDQIYKKMTTNEITSLPNRMKLTENIDTV---------GGKSLILINIDDFSLIN 190

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +  G   GDDVL      +         +  L  + F +  +  +   +    +I     
Sbjct: 191 NYNGFEFGDDVLRVFADFLVYNYAKFAEIYHLEADIFALFCLRTDTRTQEQSISIIKENI 250

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                ++   +I +TAS+G             +++ AE A+  A+  G N+   +     
Sbjct: 251 SHHEFSVNGIKIHLTASLGAVL-----NEYGNVIQKAEFALKEARLYGKNNARKYSDDLQ 305

Query: 701 RSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
               +         +  A+ ++++   + PI  L   +I   E L++ ++      S   
Sbjct: 306 IVRTIHSNSIWTGRIRKAIAHNKILAYFQPIQNLKTGKIEKYETLVRLEY-DKKIYSPFH 364

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  A     +  I   ML    +   +             +NI+  DL   +  + +  
Sbjct: 365 FLDAALYSGQMFKIFKIMLSEACKKAQTTSYIFG-------VNISEYDLKHPKFVQTIHE 417

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +   +P+RI     E+  +   +  + +L  L + G  L +DDFG  CS  + L  +
Sbjct: 418 IMKQYSVTPNRIVFEILENNSIARNKNIQDVLNVLHEDGFKLAIDDFGADCSNFAQLNNL 477

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P + +K +G  +             ++I+  A   E  ++A+ +  +     +  MG D+
Sbjct: 478 PINFIKIDGQFIKNIVKDRNSQITAKTILDYAHQKEIPVVAEFVCSKEVYDYVKEMGVDF 537

Query: 935 IQDSHVASPLGF 946
           +Q   +A P   
Sbjct: 538 VQGYEIAEPKPI 549


>gi|156933337|ref|YP_001437253.1| putative sensor protein [Cronobacter sakazakii ATCC BAA-894]
 gi|156531591|gb|ABU76417.1| hypothetical protein ESA_01150 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1129

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/554 (18%), Positives = 218/554 (39%), Gaps = 13/554 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+  +     P    + G       G    
Sbjct: 560  EVKQLNEALFQEKERLHITLDSIGEAVICTDVDMNVTFMNPVAEKMSGWRQEEAIGQSIL 619

Query: 452  WLPYIHINDRDNFRTILDS-FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +  I   D       + S    +    ++ +  +       + +   I P+S   G+ +
Sbjct: 620  TILRITFGDNGPLLDDIHSGEATHAGTGIEQDVVLHCRSGGNYDIHYTITPLSTLEGENI 679

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + + +D+TE +K L  +  +A  D LT + NR SF   L  +L  S +D + R  ++ 
Sbjct: 680  GSVLVIHDVTESRKMLRQLSYSASHDALTHLANRVSFETHLKRLL-QSVSDTHQRHALVY 738

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L    +    
Sbjct: 739  IDLDRFKAVNDSAGHAAGDALLRELASLMLGMLRTTDVLARLGGDEFGLLLPDC-SLENA 797

Query: 631  ADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +  +I   P     R   + AS G     +S   + +++  A++A Y +K+ G 
Sbjct: 798  RTICERIVAAINEYPFVWESRLHRIGASAGITIIDASNNQAQDVMSQADIACYTSKNAGR 857

Query: 690  NHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL-IQWD 745
              V  +     +          ++    +      L+  P+      E      L ++  
Sbjct: 858  GVVTVYEPHQQQLHSGRGTLTAQEQQRMINEHHHVLMVRPVASPRVPESASFWLLSLRLW 917

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
              +   I    F     +  +++A++  M+    RD  +   Q     + + + ++   L
Sbjct: 918  TSEGEMIEEHSFRAGLNDPELMQALDTRMMTDFFRDHAASVAQKG---VGVALTLSGATL 974

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            L+ +  + + A ++ +   P  + L     V+M +  ++R  L RLR+ G  + L   G 
Sbjct: 975  LNAQRLDALLAQLAASPLPPRLLHLVIDSDVLMQDTTQARRQLARLREAGCRVVLSHIGR 1034

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
            +  +  +L     D +     L+  +        +L  ++  A+ +    IA     +  
Sbjct: 1035 ELEVFEHLSASCADYIMVASDLVADAHASLMDEMLLTIVMGNARRLGLQTIAGPADQQSL 1094

Query: 924  IKELTRMGCDYIQD 937
            ++ L  +G D +  
Sbjct: 1095 LETLANVGIDLVFG 1108



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/370 (10%), Positives = 113/370 (30%), Gaps = 19/370 (5%)

Query: 166 STPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVAS--LLAIFLTIFYMVNRSSMLIPTFA 223
           +   L  + L+ P   + +  +  +   ++  +    LL  +  +  + N   +   +  
Sbjct: 92  AGTVLATLTLFPPGHLELSYTAINIVEALVGAILLRKLLPWYNPLKNLNNWLRLAFASAV 151

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           +  +V G +          + L    +L     +   +   L+ F   YL       ++ 
Sbjct: 152 VPPLVGGLLLAAISEGHVTLRLALVWILSETIGALALVPLGLL-FKARYL-LRHRSPRLL 209

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
             + + +    +   ++ +Y                 +    +++  ++        +  
Sbjct: 210 AESLATLCVTLLCSWLALHYMPW-----------PFTFVIVLLMWSAIRLPRLEAFTVFL 258

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
             ++ + F+         L +  +       L  ++IL+   V+  V+      + + ++
Sbjct: 259 ATVMMVSFVIATNPALLDLPHQGMV-VNAPWLPFLMILLPANVMTMVMYASREERKLITE 317

Query: 404 GE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            E R   A+  S   +         +     +   LG     +     ++    +  D  
Sbjct: 318 SETRFRNAMEYSAIGMALVSTEGGFLQVNKALCNFLGYTPEQLAH--MSFQQLTYPEDLH 375

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++  +         E R         W ++ +  +   +G  L +I    DITE 
Sbjct: 376 ADMEQVEKLLNGETNNYSLEKRYYTRAGDVVWALLAVSIVRQRDGSPLYFIAQVEDITEL 435

Query: 523 KKSLEGILCN 532
           K++       
Sbjct: 436 KRTEWVNKRL 445



 Score = 81.2 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+W++  D +     +  +  +   +     + W   +   D  +
Sbjct: 446 MERITLANEAGGIGIWEWELGTDVLAWDQRMFELYEVPPHT-RPTYQLWKSRLLKEDVAH 504

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +  R    + EFR++  +     +      + N  G++ R +G+  D+TE K
Sbjct: 505 AEATIQEALRARM-PFKLEFRIQVKNG-VRHIRALANRVLNKQGEVERLLGVNMDMTEVK 562

Query: 524 KSLE 527
           +  E
Sbjct: 563 QLNE 566


>gi|167749123|ref|ZP_02421250.1| hypothetical protein EUBSIR_00067 [Eubacterium siraeum DSM 15702]
 gi|167657896|gb|EDS02026.1| hypothetical protein EUBSIR_00067 [Eubacterium siraeum DSM 15702]
          Length = 851

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 179/442 (40%), Gaps = 23/442 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +S + +   AF D +  IPNR      L  I+       N + +++   +   + ++ V 
Sbjct: 416 QSQKRMRQLAFYDAIYNIPNRARLNKDLDKIMKR-----NTKGSLIAFKVTNTRTLSAVY 470

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G    D +L S+ + + +L      +   +   F + L    ++    +    +    + 
Sbjct: 471 GHTYSDMLLRSIAQYLKDLPVKDIGVYYFTNAIFMLNLPDCTDNE-AKNLVEMLIHRFSK 529

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
           P    E E ++  S+G A +  +   + E+ K A  AMY A+    N    +  S  R+ 
Sbjct: 530 PWKFGEDEHSIHCSLGIAFYPENGEDAEELCKAASTAMYRAREFKQNSYAFYSGSLERTR 589

Query: 704 RV--MIKEDLCLAVENS--ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                +++ +   + +      L + P    +D  I+G E+ ++W   ++GNI +S    
Sbjct: 590 MFAASLEQHIRECINDGMRGFSLRFQPSFSAVDGSIIGCESFVRWHDEQYGNIPNSTLFP 649

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE L +   I+ +++ER        +D        + +N+ + +    E+   ++  + 
Sbjct: 650 MAENLGLSHVIDGWVMERSCEFCKEIQDA-GFENFTVSVNLTAGEPQSAEIVTQVRHALE 708

Query: 820 KTLYSPSRIKLSFS--ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           ++   PS + L      ++   +      +L  LR +G+++ +D +GT    L  L    
Sbjct: 709 ESALPPSSLILEIPVKANIFYSDSTH---ILHDLRTLGVNIAIDKYGTGNISLKVLKNSY 765

Query: 878 FDTV----KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
            + V    K     M    E    ++ S+I +AK  + T+  K I  +  +  + +   D
Sbjct: 766 VNLVNLPAKL---FMNHEDEFDTELVSSVIHLAKCRKLTVCVKGIEDKEQLDTVQKFDID 822

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
            IQ  + + PL  +    +  E
Sbjct: 823 RIQGYYCSRPLSLSEAKTVFTE 844



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              + L  I+ +D      +          R +   R    D ++HW  +  + +    G
Sbjct: 34  TYPSLLELINPDDIPPITEMFTDVSQDEEKRFEAHCRFMVND-EYHWFFLSCKAVYAEYG 92

Query: 508 DILRYIGIANDIT 520
             +R+ G   D++
Sbjct: 93  RPVRFEGTMCDVS 105


>gi|157163903|ref|YP_001466002.1| mechanosensitive ion channel family protein [Campylobacter concisus
           13826]
 gi|112801219|gb|EAT98563.1| putative diguanylate cyclase/phosphodiesterase [Campylobacter
           concisus 13826]
          Length = 805

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/603 (16%), Positives = 196/603 (32%), Gaps = 43/603 (7%)

Query: 361 RLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWD 420
                I+   +V   VL +I                ++ +    +     V      +  
Sbjct: 223 LASYSIMIRNIVIMQVLCLISFVLFCALAFYQARVLTKQLKQ-IKLLKTTVDAGHSSIVF 281

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHIND-RDNFRTILDSFVGYRRGR 478
            D     +       +  G     + G   +     +H        R  ++  + +    
Sbjct: 282 CDNDNKILYVNKTFESKTGYKLKDVVGKSPKILKSNMHPESFYAEIRNAINKHISWESD- 340

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------EQKKSLEGILC 531
              E   R    +  +  +R  P     G +  Y+ I  D T       E  +  E I  
Sbjct: 341 ---ELISRTKSGKLLYEKVRFAPFFFE-GKLEGYMAIKLDRTKELSMLKELTQKNEQIKI 396

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            +  D LTG  N  +  + +                ++ I I  YK +       V + +
Sbjct: 397 QSSIDKLTGFGNYFALTEMIEA---------KKDGILISISIKNYKMLRFFYQNKVIEAM 447

Query: 592 LVSLTRRIGELLKFPDI---LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           L ++   +   +    I   L R   + F I    ++    I  F         M I + 
Sbjct: 448 LKAVANTLKLCVDTYSINAELFRFQDDAFYIWYQGDDIVRDI-GFIKEYFNFSRMNIEID 506

Query: 649 ER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRVSSFRSDR 704
            + E      I      S+    +  L  + LA   A   G           +       
Sbjct: 507 GKFENLPGIKITLGVSLSNDTPQTNRLMQSILANQQASDSGNEIYYYLENDAIEMRYYKN 566

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG--LEALIQWDHPKWGNISSSEFMLIAE 762
            +I E +  A+EN ++ +    I  + + E      E L++            EF+ IA 
Sbjct: 567 QLITELIEYALENDKVIVECQGIFNVHENETEAKYYEVLVRIVDQNGKIRYPGEFLEIAM 626

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +   I   ++      +  +      P     IN++S DL D  + E +   +    
Sbjct: 627 KTQLYLQITKKVIALAFDLVKKY------PDYTFSINLSSSDLTDPGVREILDEKLESCP 680

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PSR+     ES  + +   +   + R +K G  +++DDFG+  S    +  +  D +K
Sbjct: 681 -DPSRVCFEMLESEELSDYGMANEFIKRAKKYGCKISIDDFGSGYSNYYRILELDIDNIK 739

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GS++      E    ++ +I+  A+     I+A+ +  E  ++ + + G  Y Q   +
Sbjct: 740 IDGSIIKKLPTDENARVLVETIVSFARRQGYKIVAEFVSNEEILEYIKKFGISYAQGFLL 799

Query: 941 ASP 943
             P
Sbjct: 800 GKP 802


>gi|229077847|ref|ZP_04210467.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
 gi|228705461|gb|EEL57827.1| Sensory box/GGDEF [Bacillus cereus Rock4-2]
          Length = 529

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 175/387 (45%), Gaps = 12/387 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +  + D +   D +       P    I G     ++        +I+     +F+ 
Sbjct: 136 FKSLLEYNNDSIISIDSIGRVTYANPATYEIFGYRYEELNNKFI--FEFINKEYEKDFQI 193

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           I    +  +  ++  + +    +    ++ +R  P+   NG+I+    +  D+T Q  + 
Sbjct: 194 IFKGSMQGKAKQIVSK-KYVHKEGYELYISLRTIPII-VNGEIVGIYIVTRDVTRQVLNE 251

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
                 A+ D LTG+ NR S  ++L T L     ++++   ++ ID+D++ +IND  G  
Sbjct: 252 MRTEYLAYYDQLTGLMNRISCTNKLNTFL-----NESVNFALVFIDLDEFHRINDTFGHK 306

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD VL  +T  +  L      L R   ++F +++ +      + + A ++ K+I+    
Sbjct: 307 EGDKVLQKVTECLSNLKIEDMHLFREHDDQFVMLIENIT-KEYVEEVAKSILKNISEYFV 365

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV--SSFRSDR 704
           + E ++ ++ASIG     +       + +  + A+  AK +G  H   +       R  R
Sbjct: 366 IEEEDVYLSASIGIVMAPTDGEDEKILFQRVDAALEKAKEKGKGHYHFYCSGLDCEREQR 425

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            +I+  L  A+E +E +L Y P I +  ++I  +EALI+W++ + G +S ++F+ +AE  
Sbjct: 426 FIIENQLHRAIEKNEFFLYYQPQINIETKKIASMEALIRWENKELGFVSPNQFIPLAERT 485

Query: 765 CMIKAINLFMLERIARDIISWRDQANM 791
             I  ++ +++ ++ + +  W ++   
Sbjct: 486 GFIIKLDEWVVNQVCQQLREWLNKGYD 512


>gi|257791973|ref|YP_003182579.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
 gi|257475870|gb|ACV56190.1| diguanylate cyclase/phosphodiesterase [Eggerthella lenta DSM 2243]
          Length = 981

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 170/457 (37%), Gaps = 34/457 (7%)

Query: 512 YIGIANDITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +G+A  ++  K ++   +   +F D LT   +   F   +   +  +    +    ++ 
Sbjct: 521 VLGVALYVSHVKLRAARRVEDFSFTDPLTEGWSLARFRSEVGAQMANAR---DGAYAIVY 577

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+  +K  N   G A GD VL+ L   +  +    +  A +  + F +++        +
Sbjct: 578 LDVKSFKGFNAAFGYATGDRVLLDLNGTLAGMKAPDERYAHVIADEFVLLVRW-RGWDAL 636

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS-------EMLKNAELAMYH 683
            +    + +       L E    +    G      S  T         E +  A  A   
Sbjct: 637 LERFDELDRRFNSTETLTELSHRLMLQAGVCIIERSAETPRIDVQTIIEFVDAARYARDS 696

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                 +    +   +         +      A+E  E    Y P + +    +VG EAL
Sbjct: 697 IGEASRSTAALYSASMKDRDIAERALVAAAHDALERGEFTAYYQPKVEIATNRLVGFEAL 756

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+ P+ G +   EF+ + E   ++  ++L +   +   I    D     P+ I  N +
Sbjct: 757 VRWESPERGLVPPDEFIPLFERTGLVVDLDLQVFRLVCARIREQLDA-GEHPLVIACNFS 815

Query: 802 SKDLLDNELCEGMQALISKTLYS--------PSRIKLSFSESVVMGNPERSRLLLGRLRK 853
              + ++   E +++++                 I         M + ER+  L  RL+ 
Sbjct: 816 RLHMRNDAFPETVKSIVDGFGVPIELLELELTENIV--------MEDLERAERLCRRLKD 867

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIET 911
           +G  + +DDFG+  S L  L  +P D +K + S +  + S E+  AIL  ++ +A  +  
Sbjct: 868 LGFRIAIDDFGSGYSSLGTLQNLPIDVLKLDRSFLMSSESGERCKAILDGVVSIADKLAV 927

Query: 912 TIIAKDIYGEIDIKELTRMGCDYI-QDSHVASPLGFN 947
            ++ + +        L RM    I Q    + P+  +
Sbjct: 928 NVVVEGVETRDQASMLVRMDDRIIAQGFLYSRPVPRD 964


>gi|317489982|ref|ZP_07948474.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316910980|gb|EFV32597.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 981

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 170/457 (37%), Gaps = 34/457 (7%)

Query: 512 YIGIANDITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +G+A  ++  K ++   +   +F D LT   +   F   +   +  +    +    ++ 
Sbjct: 521 VLGVALYVSHVKLRAARRVEDFSFTDPLTEGWSLARFRSEVGAQMANAR---DGAYAIVY 577

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+  +K  N   G A GD VL+ L   +  +    +  A +  + F +++        +
Sbjct: 578 LDVKSFKGFNAAFGYATGDRVLLDLNGTLAGMKAPDERYAHVIADEFVLLVRW-RGWDAL 636

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS-------EMLKNAELAMYH 683
            +    + +       L E    +    G      S  T         E +  A  A   
Sbjct: 637 LERFDELDRRFNSTETLTELSHRLMLQAGVCIIERSAETPRIDVQTIIEFVDAARYARDS 696

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                 +    +   +         +      A+E  E    Y P + +    +VG EAL
Sbjct: 697 IGEASRSTAALYSASMKDRDIAERALVAAAHDALERGEFTAYYQPKVEIATNRLVGFEAL 756

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+ P+ G +   EF+ + E   ++  ++L +   +   I    D     P+ I  N +
Sbjct: 757 VRWESPERGLVPPDEFIPLFERTGLVVDLDLQVFRLVCARIREQLDA-GEHPLVIACNFS 815

Query: 802 SKDLLDNELCEGMQALISKTLYS--------PSRIKLSFSESVVMGNPERSRLLLGRLRK 853
              + ++   E +++++                 I         M + ER+  L  RL+ 
Sbjct: 816 RLHMRNDAFPETVKSIVDGFGVPIELLELELTENIV--------MEDLERAERLCRRLKD 867

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIET 911
           +G  + +DDFG+  S L  L  +P D +K + S +  + S E+  AIL  ++ +A  +  
Sbjct: 868 LGFRIAIDDFGSGYSSLGTLQNLPIDVLKLDRSFLMSSESGERCKAILDGVVSIADKLAV 927

Query: 912 TIIAKDIYGEIDIKELTRMGCDYI-QDSHVASPLGFN 947
            ++ + +        L RM    I Q    + P+  +
Sbjct: 928 NVVVEGVETRDQASMLVRMDDRIIAQGFLYSRPVPRD 964


>gi|304312445|ref|YP_003812043.1| 7TM receptor family protein [gamma proteobacterium HdN1]
 gi|301798178|emb|CBL46400.1| 7TM receptor family protein [gamma proteobacterium HdN1]
          Length = 656

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/696 (14%), Positives = 211/696 (30%), Gaps = 95/696 (13%)

Query: 9   SHFEKAFLILVL-FLLWMVSPSFAIEPINISSSDR--VLDLTSITRIYVNQGEDFQVFTA 65
             +  A+  L     + +   +FA        S     ++L +   IY +  +   +   
Sbjct: 22  KEWLWAWCALFFSISMLLAGNAFAASSFQQDRSQEPTSVNLATYLHIYEDTQQRLSLSDV 81

Query: 66  ADIDGISR---RIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122
             +        R +V  +       W    L+  ++      + + +  L     +    
Sbjct: 82  MALPESRWAPNRDQVFNAGFTLSSWWFYVDLSAAANGNHFDFLEIENPLLDNLDVYFVTN 141

Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRIT---INPGAVVTFIMEISTPNLPQIYLWEPN 179
           G                R+ +  + +  +    ++    V   +  S      IYLW+  
Sbjct: 142 GLIETQITLGDSLPFSRRMVDHRNFLIPLPKISLDRNTRVYIRVTTSGTMQLPIYLWKSE 201

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239
            + +      +++ +  G+   +A      Y+   +            +L + +   G+ 
Sbjct: 202 AFLEADQMAVMWQSLFYGIMLAMAFVNFFVYLATFNISYFYYVGTVVSLLLFQATLHGYG 261

Query: 240 SKL-VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFC 298
            +L             A     +    ++F   +LH         ++  +      I   
Sbjct: 262 YRLLWPDNQWWQEHSIAFFVSCICMFAMLFTISFLHLREQKKTYYFLFKTLAILSVIGVL 321

Query: 299 MSFYYPMVTAS-IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMA 357
           +S   P   A   A + +A          I     GY+      PA   +  W I     
Sbjct: 322 LSLVLPYALALRFAVVAIALGSPLCVLIGIVLLRSGYK------PARFYLLSWNI----- 370

Query: 358 ITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDI 417
                        L+  +VL+   +G   +  +      +           LA+  + +I
Sbjct: 371 ------------FLISSMVLLANKVGLLEVSWLTENIQQAGATLQA---FILALALADEI 415

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
                              +      +    +++         R+     L+  V  R  
Sbjct: 416 -----------------QQMHKDQLSARETQLQHERDL--REARERTNRELEQRVEERTQ 456

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
            L+   +  A+                                    + E +   +  D 
Sbjct: 457 ALEDAVQKLAS------------------------------------TNEQLERMSIIDE 480

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           L+ + NR+ F  +  T    +   +    +V++ D+D +KKIND  G  VGD  +  +  
Sbjct: 481 LSQLHNRRYFNHKFETDFKTAYR-EQCSISVIMFDVDHFKKINDHYGHLVGDYCIAHVAG 539

Query: 598 RIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
            + + +    DI+AR  G  F ++L + N    +       R+   +P+     +I +T 
Sbjct: 540 ILKKHVTRASDIVARYGGEEFVVVLNNTNAQGALHVAEEIRREVFTIPMQHDGMQIPMTV 599

Query: 657 SIGFAS-WTSSKITSSEMLKNAELAMYHAKHRGGNH 691
           S G A+         +E+L  A+ A+Y AK  G N 
Sbjct: 600 SGGVAAGIPHHYQGMAELLNLADNALYKAKQNGRNQ 635


>gi|300936627|ref|ZP_07151531.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300458208|gb|EFK21701.1| PAS domain S-box [Escherichia coli MS 21-1]
          Length = 1105

 Score =  274 bits (701), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 201/563 (35%), Gaps = 17/563 (3%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLM--DEEIVGLEALIQWDH 746
            V  +      +        L      ++ ++L ++ H +          + L +L  W  
Sbjct: 840  VTVYEPQQAAAHSERAAISLDEQRRMIKENQLMMIAHGVASPRIPQARNLWLISLKLW-S 898

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +   I    F     +  +  A++  +     +             + I + ++   L 
Sbjct: 899  CEGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLS 955

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
               L   +   +  +   P  + L      ++ +         +LR  G  +     G  
Sbjct: 956  SATLVNELIEQLENSPLPPRLLHLIIPADAILDHAASV----QKLRLAGCRIVFSQVGRD 1011

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
              + + L     D +  +G L            ++  I   A+ +    IA  +   + +
Sbjct: 1012 LQIFNSLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVM 1071

Query: 925  KELTRMGCDYIQDSHVASPLGFN 947
              L+ +G D I    +A     +
Sbjct: 1072 DTLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|294142585|ref|YP_003558563.1| GGDEF domain-containing protein [Shewanella violacea DSS12]
 gi|293329054|dbj|BAJ03785.1| GGDEF domain protein [Shewanella violacea DSS12]
          Length = 624

 Score =  274 bits (701), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 108/696 (15%), Positives = 229/696 (32%), Gaps = 88/696 (12%)

Query: 10  HFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADID 69
             +    I + F L     + A   + +      L+L      Y    +   +     +D
Sbjct: 3   PMKHLSFIFICFALLFSFHARAETILAVGDEGIALELAPWL-YYAPAKKAGNIDAVKKLD 61

Query: 70  GISRRIEVSASS--IRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRI 127
               +      +  I     W  F++ N    Q++R++ + +  +  +  +    G    
Sbjct: 62  ARHWQRLTPTYNNRIGVAAFWVKFSIYNPKRHQIDRILSLANPHIDLASLYHVVNGEVID 121

Query: 128 ISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPNF--YKDTV 185
             +        + +  +++ ++   + P  + TF ++I T     + L   +   +   V
Sbjct: 122 RIIMGDSLPFTESLIINNNFIYTFQLEPNVLHTFYLKIETQGSASLPLSLSSPNSFAKDV 181

Query: 186 NSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VN 244
            + +L  G  +G  + + +F     + + S            V   ++   G+  +    
Sbjct: 182 ETSSLSNGFQLGALTAIGLFSLFIAITSGSFSYSYYAGYVLSVTLLVATLHGYAFRFIWP 241

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY-Y 303
                                ++F    L     +  +  +   G     +L  ++ +  
Sbjct: 242 QWPLLQQYMIPFLIPMAIFFALLFTEKILQLKHHNLPMLRLCRYGAGFSILLALLAPFLN 301

Query: 304 PMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLD 363
             ++  +  IT+  +        +    KG++ A L   AW  + +              
Sbjct: 302 YSLSLYVNIITVLVVTTLMMVMALIQAFKGHKLAKLYTLAWSGMLVG------------- 348

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
              +  A+  GLV + I     ++  +L    F   + +                     
Sbjct: 349 -SFVTSAMYLGLVDLPISHLTPLMLGLLFEIIFMAAVLA--------------------- 386

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYE 482
               +    +    L     +     R+   + H    +      L+S V  R   L+  
Sbjct: 387 ----IRYNDERKAKLKTQQEAAIQAQRSREAWEHAQRVEARSNEKLESMVQERTLELEIA 442

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP 542
            R                                    E  ++ + +   A  D+LTG+ 
Sbjct: 443 LR------------------------------------ELNEANQKLTEQATVDSLTGVK 466

Query: 543 NRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL 602
           NR +F  RL       +        ++++DID++K IND  G   GD  L  + + + E 
Sbjct: 467 NRAAFDKRLLAE-GRLSRRQQTPMALLMLDIDRFKSINDNYGHLAGDQALRLIAQTLKEQ 525

Query: 603 L-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGF 660
           L +  D+++R  G  F IIL +          A  +R++I+  PI+  +  I +T SIG 
Sbjct: 526 LKRPGDLVSRYGGEEFAIILPN-TGEEGAMQVAELIRQTISELPISWKKHSIPLTISIGV 584

Query: 661 -ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            A         +++L+ A+ A+Y AK+ G N V  +
Sbjct: 585 SAEIIERDQDPTKLLEQADKALYRAKNEGRNRVMVY 620


>gi|207739531|ref|YP_002257924.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
 gi|206592911|emb|CAQ59817.1| signal transduction protein ggdef domain [Ralstonia solanacearum
           IPO1609]
          Length = 443

 Score =  274 bits (701), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 142/337 (42%), Gaps = 3/337 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V A     + + +  ER +  + G+G   +DW +    V+     A +LG    
Sbjct: 105 IVQVQDVTARRLALESLQASEERLAYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGYEPD 164

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            +    ++W   +H  D       +   +       + E R+R A+ Q+ W+  R R   
Sbjct: 165 ELSSDPQDWFAMVHPQDAVLSLRRIYRHLRGDADSFEVEQRLRGAEGQWVWVSARGRVTQ 224

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G  +R  G   D+T+++  L+     A  D LT +PN +   DRL   +  +    
Sbjct: 225 RDGFGIAVRVSGTLQDVTKRRAMLDQAHHLALHDPLTDLPNARLLRDRLFVAIQAARRAR 284

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +L   V+ +D+D++K IND  G  VGD VL +   R+   L+  D +ARL G+ F  +L 
Sbjct: 285 SL-VAVVFVDLDRFKPINDEYGHGVGDLVLKATAMRLRSGLRASDTVARLGGDEFVAVLT 343

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P  +    +++  S G A + S    +  +++ A+ AMY
Sbjct: 344 HCQTRDDVEQTVERLIEQLQAPFRVEGHVLSMGVSAGVALYPSDGRDAQGLIRCADAAMY 403

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
             K  GG     F  S      + +++    A  + E
Sbjct: 404 EVKRAGG-SGFGFHASLNYERLMNMRQRGPDADGDGE 439



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 3/121 (2%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A+  S   +         +     + T+ G  + ++    R+     H +  D  R 
Sbjct: 2   YKAAIEHSPIGIGLCAPEGRFLDVNRALCTLTGHEAQAL--RARDLFDLCHPDHADRTRE 59

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +++ +   +  L  E R    D    W+   +       GD    I    D+T ++ +L
Sbjct: 60  RVEALLAGEQEALSLETRFVRPDGSTVWVQADLAVARADAGD-GHLIVQVQDVTARRLAL 118

Query: 527 E 527
           E
Sbjct: 119 E 119


>gi|317471233|ref|ZP_07930598.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901280|gb|EFV23229.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 476

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 187/401 (46%), Gaps = 16/401 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +  + +   A+ D +  I NR  +L  +  ++     D      V  +DI  + K N++ 
Sbjct: 85  QYRKSVEQIAYFDPVYHIGNRMKYLKDVDMLISY---DAKRYFRVYSMDIRSFSKYNELF 141

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            ++ GD +L+ +TRR+  +    + L R++G+ F  I    +           +R +   
Sbjct: 142 SVSTGDALLMEITRRLEHIF--GNNLYRINGDVFIGISFEADKDKD--HKVGRIRNAFQS 197

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--- 700
           PI + +   T+   IG   +     TS ++L++ ++A+ +AK  G     +  +      
Sbjct: 198 PIVVEDSTFTLDVLIGICDYPLHAKTSEKLLESVQMAVNYAKTSGAGMANNVILYDDKLL 257

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R +   I   L  +++   L ++Y P+  L  E   G EAL++  H   G + + + +
Sbjct: 258 EVRREEARIVRLLETSLKEKTLEVLYQPLYHLKRERFTGTEALVRLPHGNGGYVPAGQVI 317

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  ++  +  +++ R    ++    +  +    + IN++ + LL       +   I
Sbjct: 318 EIAEKNGLVGQVGEYVIHRACTFMMEKGKKLGIES--MGINLSVQQLLVENSVPSIIGHI 375

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            KT   P  I    +E+V++ + E ++ +L  L   G+ + LDDFG   S L+YL  +P 
Sbjct: 376 KKTGLDPKCITFEITETVLIQSIELAKGILDELSSYGVRIALDDFGIGYSSLNYLLNLPV 435

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKD 917
           + +KF+ S+   S  +EK+ A+L+++I MA   +  ++A+ 
Sbjct: 436 NVLKFDRSMTKKSVDSEKQYALLKAMIQMADISQMDVVAEG 476


>gi|299069608|emb|CBJ40880.1| putative signal transduction protein ggdef domain [Ralstonia
           solanacearum CMR15]
          Length = 442

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 133/313 (42%), Gaps = 2/313 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V A     + + +  +R +  + G+G   +DW +    V+     A +LG    
Sbjct: 108 IIQVQDVTARRLALESLQASEQRLAYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGYTHD 167

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            +    ++W   +H  D       +   +       + E R+R  + Q+ WM  R R   
Sbjct: 168 ELSTDPQDWFAMVHPQDAALSVRRIYRHLRGDADSFEVEQRLRNQEGQWVWMSARGRVTQ 227

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++ G  +R  G   D+T ++  L+     A  D LT +PN +   DRL   +  +    
Sbjct: 228 RDALGIPVRVSGTLQDVTRRRAMLDQAHHLALHDPLTDLPNARLLRDRLFVAIQAARRAG 287

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +L   V+ +D+D++K +ND  G  VGD VL +   R+   L+  D +ARL G+ F  +L 
Sbjct: 288 SL-VAVVFVDLDRFKPVNDEYGHGVGDLVLRATAMRLRSGLRASDTVARLGGDEFVAVLT 346

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P  +    +++  S G A + S    +  +++ A+ AMY
Sbjct: 347 HCQTRDDVEQTVERLIEQLQAPFRVEGHVLSMGVSAGVALYPSDGRDAQTLIRCADAAMY 406

Query: 683 HAKHRGGNHVESF 695
             K  GGN     
Sbjct: 407 EVKRAGGNDFGFH 419



 Score = 69.2 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 4/123 (3%)

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              A+  S   +         +     +  + G  + ++    R+     H +  D  R 
Sbjct: 2   YKAAIEHSPIGIGLCAPEGRFLDVNRALCALTGHEAQAL--RARDLFDLCHPDYADRTRE 59

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIANDITEQKK 524
            +++ +   +  L  E R    D    W+   +    +   +G     I    D+T ++ 
Sbjct: 60  RVEALLAGEQDALSLETRFVRPDGSTVWVQADLALARSEAGDGQDGHLIIQVQDVTARRL 119

Query: 525 SLE 527
           +LE
Sbjct: 120 ALE 122


>gi|205372736|ref|ZP_03225546.1| diguanylate cyclase/phosphodiesterase with FHA and GAF sensor
           [Bacillus coahuilensis m4-4]
          Length = 215

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 55/216 (25%), Positives = 115/216 (53%), Gaps = 3/216 (1%)

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+HP+ G IS S+F+ IAEE  +I  +  ++L++  + +I W      P + + +N++
Sbjct: 1   MRWNHPEKGYISPSKFIPIAEETGIILELGEWVLKQSIKQMIEWHRIY-NPTLKLSVNVS 59

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
            K +        +   + +  Y P  + L  +E++ M N ER+  ++  ++ +G+++++D
Sbjct: 60  MKQIEHPAFLSFLSQTLQEFSYPPHLLILEVTETLAMKNIERALNVVRNIQDMGVNVSID 119

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +    +K + S + G     K   I+++I+ +A++++  + A+ I 
Sbjct: 120 DFGTGHSSLSYLQLLGIKHIKIDRSFIDGIVENSKSKEIVKAILSIAQHLQLNVTAEGIE 179

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +  +  L  + C   Q   ++ P+    I KLL+ 
Sbjct: 180 TKEQLHLLKGLNCQSGQGFLLSKPIPPEKIEKLLEN 215


>gi|291525565|emb|CBK91152.1| diguanylate cyclase (GGDEF) domain [Eubacterium rectale DSM 17629]
          Length = 1021

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 166/429 (38%), Gaps = 26/429 (6%)

Query: 524  KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            K+          D +TG+  R++F +   + ++     D     V   DI +   IN+  
Sbjct: 606  KARAEYEYRLNFDQVTGLRKRETFNNLGESYVE----YDCSFMGVFASDIIRLSDINEKF 661

Query: 584  GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
            G   G+  L  +   I  +    D + R   +   +      +          +R+S+  
Sbjct: 662  GYMAGNARLKMVADVISGVFTGYD-IYRYEQDEIVVFCKDI-DKKSFMGLVRIVRESLD- 718

Query: 644  PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
                   ++ V+ S GF+   + K   +  L    L     K            S     
Sbjct: 719  -------DLDVSVSTGFSW--TDKPDIARQLSEVRLMYDIEKDAK-------LKSLDSIM 762

Query: 704  RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            R  + +D+   +E     + Y P +       VG EALI++     G +    F+ I EE
Sbjct: 763  RNKVFKDVVSEIEKGSFMVYYQPKVDSRTGITVGAEALIRFFDEAHGVVGPIHFIEILEE 822

Query: 764  LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
                  I+LF+L+ + +     R  ++   + + +N +   L   +L E ++ ++++   
Sbjct: 823  NRCSHLIDLFVLDEVCK-AQKLRCISDRRVVPVSVNFSKNTLEYADLLEQVKEIMNRYDL 881

Query: 824  SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
                +++  +ESV   +      +   L  +G  L++DDFGTK S L  L   PF   K 
Sbjct: 882  PEGLVQIEITESVGDMDIVLINNIAQSLISMGFRLSMDDFGTKYSNLEMLFKFPFSIAKI 941

Query: 884  NGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + SL+      EK   +L+ +I M   +    +A+    +  ++ L + GC+ IQ    +
Sbjct: 942  DRSLVKNLESNEKSRIMLKHLISMIMELGIECVAEGAENKEQVRLLQQFGCNIIQGYFYS 1001

Query: 942  SPLGFNSIL 950
             P+  +   
Sbjct: 1002 KPVTLDVFT 1010



 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 127/298 (42%), Gaps = 28/298 (9%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTT------TPDIATILGLASGSMHGPIRNWLPYIHI 458
           E   +    + + ++++ +  D          +P   T+           I  ++     
Sbjct: 21  ELMKIVAENNHERMFEYYVEDDEAYIFKIVNSSPAQETV--YPV--FKQNIDTYMSECPA 76

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +  + F+  LD  +  R  R  ++    + D +   + + +  + + +  +   +G+  D
Sbjct: 77  DSIECFKKQLDKCLL-RPMRTAFQLSFISEDGKSKPVEMYMVSIPDLDKKVCMVVGVMFD 135

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I + K  L         D+LTG  N  +F ++ T+++         +   +++D+D +K 
Sbjct: 136 IRDVKGLL---------DSLTGTYNHLAFENKCTSLI----RQKGTKLLFVMLDVDDFKI 182

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND LG  VGD VL    + + E +    I+ RL G+ F  I+    +S  + +F + + 
Sbjct: 183 VNDTLGHNVGDRVLSQTGQVLKEAVGANGIVGRLGGDEFAAIVFGLEDSDAVDEFCVKLS 242

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             +   I     ++  +ASIG  +    ++T  ++   A+ AMY++K +G N +  F 
Sbjct: 243 GRLKNII----FDMEYSASIGMTTGDDRELTFKDLYYEADQAMYYSKRQGKNRISFFN 296


>gi|225871794|ref|YP_002753248.1| PAS domain S-box [Acidobacterium capsulatum ATCC 51196]
 gi|225793051|gb|ACO33141.1| PAS domain S-box [Acidobacterium capsulatum ATCC 51196]
          Length = 699

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 125/256 (48%), Gaps = 9/256 (3%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + DL  A+EN E Y V+ P++ +   ++ G E L +W+  +   IS   F+   E   +I
Sbjct: 39  EADLRRALENEEFYPVFQPMVEIRTGQLAGFEVLARWN-CQGQEISPEVFVPAIEYAGLI 97

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   +  ++       + +A      + +NI+++ LLD ++   ++ L S+  +   R
Sbjct: 98  SPMTQVLTRKVFACAALQQSRAL-----LSLNISARQLLDPDMPRRVERLASEFQFPLHR 152

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++ N +R+  +   L+ +G  L LDDFGT  S L ++  +P D +K + S 
Sbjct: 153 LTLELTESALLDNLDRAAAVAHDLKSLGCRLALDDFGTGYSSLRHVHALPLDEIKVDRSF 212

Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +       +  AI+ S++ + + ++   +A+ +  +   + L  MGCD  Q      P+ 
Sbjct: 213 VESMAVRRESRAIVASVVGLGQGLKLLTVAEGVETQEQAEMLFWMGCDLGQGWFYGHPVP 272

Query: 946 FNSILKLLKER-FPLV 960
            + +  LL  R +PL 
Sbjct: 273 ADELPDLLDRRIWPLA 288



 Score = 94.2 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 3/134 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            Q +          +     + W  +     V  +     I G    +  G    W+  +
Sbjct: 430 EQALLESETHFRHMLQLGPHVPWVVNAQGGVVEASSRWEEITGQPVPAALG--DGWMRML 487

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +D    R  +D+ +      +  E+RVR     +  M  R  P     G +    G+ 
Sbjct: 488 HPDDIAPTRAAIDASLK-SGHPIDIEYRVRDLKGAWRRMRSRGSPRFGDEGHVQGIYGVV 546

Query: 517 NDITEQKKSLEGIL 530
            DI E +K  E + 
Sbjct: 547 EDIEEHRKMSEELQ 560



 Score = 44.6 bits (104), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 8/140 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD-IVRDRVTTTPDIATILGLAS 442
           + V++ +      S+ +         A+  +   +   D               I G  +
Sbjct: 543 YGVVEDIEEHRKMSEELQRCHAELRAALNSAPMGMILADGSDGAITLVNRRAQQIFG--T 600

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDS-----FVGYRRGRLQYEFRVRAADNQFHWMII 497
           G+  G        + + D D     L+       + + +      + +R  D     ++I
Sbjct: 601 GAFPGQKFTQYLRMQVRDVDGQLLKLEKYPLAKVIQHGQPTEPRTYLLRQPDGIMAQIVI 660

Query: 498 RIRPMSNSNGDILRYIGIAN 517
             RP+ +  G+++  + +  
Sbjct: 661 SARPIYSDAGELIGGMMVVR 680



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
           +             +      G+   +   +     V+    +A + G    +  G    
Sbjct: 298 SHISLEAIAPHRMAQLQAIYDGAPVGLCFLNQEMRYVSLNRRLAEMNGAPVAAHIGRT-- 355

Query: 452 WLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +  +           +   +       ++++      D     ++   RP+  SNGD++
Sbjct: 356 -VEDVIPEVFAQVEPYIRRALAGEPMSGVEFKKPGVGKDGADQILVGSYRPVRESNGDVV 414

Query: 511 RYIGIANDITEQKKSLEGILCNAFQ 535
                  D+T  K++ + +L +   
Sbjct: 415 GVSAAITDMTLYKRTEQALLESETH 439


>gi|313682446|ref|YP_004060184.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155306|gb|ADR33984.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Sulfuricurvum kujiense DSM 16994]
          Length = 563

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 185/442 (41%), Gaps = 31/442 (7%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA  + +  K +E I+     D+LTGIPNRQ   + L               ++M+I+I 
Sbjct: 147 IARAVNDYFKQMERIVKQ-TTDHLTGIPNRQQLTEDLE---------VTGAKSLMLINIK 196

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            ++ IN+  G  +GD +L     R+  +L+  + + R+S + F I+      +  +    
Sbjct: 197 HFRNINESYGYDIGDAILQLFASRLATVLESQERIYRVSADEFAILTKEIYGNEILIKQD 256

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +R     P  + E  + +   I FA   S+      + +  ++A+ +AK    + ++ 
Sbjct: 257 NIVRCIENEPFRIGEIRLKINVFIAFARGESN------LRRMCDIALSYAKENNMSFIDF 310

Query: 695 FRVSS---FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            + +          ++   +  A+    +      II + D     +E L++    K   
Sbjct: 311 NKNTHIIDELHKSKLLTAMIQNAINKKYIKPFGQKIINVFDNS-YHIETLMRIIDDKGQI 369

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
              S F+  ++   +   + L MLE +        D          INI  +D+++ E+ 
Sbjct: 370 TMPSFFLEQSKTAGIYTNLTLLMLENVF-------DYFRHNTYHFSINITHEDMINKEVS 422

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNP-ERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
                LI +      R+ +   ES  + +  +     + + +  G  +++DDFG+  S  
Sbjct: 423 FLFFNLIDQYNM-HGRVIIELVESEHIDSSNKNVSEFIDKAKAAGCRISIDDFGSGYSNF 481

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +Y+  +  + +K +GSL+        A   ++SI+ +AK ++  IIA+ ++ E     + 
Sbjct: 482 NYIVNMSPNFLKIDGSLIKNIDTDESAYLTVKSIVSLAKELKIDIIAEYVHSETIFNIVR 541

Query: 929 RMGCDYIQDSHVASPLGFNSIL 950
            +  +++Q  ++  P    +I 
Sbjct: 542 SLDIEFLQGYYLHQPEPIENIT 563


>gi|27365540|ref|NP_761068.1| hypothetical protein VV1_2213 [Vibrio vulnificus CMCP6]
 gi|27361688|gb|AAO10595.1| hypothetical protein VV1_2213 [Vibrio vulnificus CMCP6]
          Length = 832

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 95/560 (16%), Positives = 203/560 (36%), Gaps = 33/560 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             +      E            +   D     +        + G     + G        
Sbjct: 132 LLRDADEVAELFYRLFENDHHGILVTDEETRILACNAYFERLTGYHRRDLIG----LKSR 187

Query: 456 IHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           I   D+  ++F   +   +    G        R +  +     + I+ ++ +  D   +I
Sbjct: 188 IFNADKHSEHFYQSMWHALATE-GSWSGAILTRTSGGENTPQDLTIQKVTLAGRD--YFI 244

Query: 514 GIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           G + D+ T   +  +        D LT +P+++ FL  L          ++ + T++++ 
Sbjct: 245 GFSADLSTHLNRLNDREKGG--IDLLTQLPSKEKFLRLLEVW----HQSESDKSTLLLL- 297

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-KIA 631
                 I      +   +      + + E      ++  L  +RF + L  E++S   + 
Sbjct: 298 -----AIQPNFSYSTELNAKREFAQFLFEHSHNH-LVGYLGNDRFVVGLEIEHHSHISLI 351

Query: 632 DFAIAMRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  K         + E++        G +       T + +  +A  A+       
Sbjct: 352 RQVRQRMKRFFHGFKQAKGEVSQALTQGKTGVSVLGVDAKTPAALFTHANQALLEMHSGQ 411

Query: 689 GNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             H+  +  +       +  ++  L   +E   + + Y PII L    +   EAL ++  
Sbjct: 412 QRHISFYDHAMHLQIEKKKRLETLLLECIEQKTIEVHYQPIIDLQQWRVDKFEALCRFPP 471

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA-SKDL 805
                 S  E + IAE+L MI+ ++  +  +   D+   +     P + I  N + S   
Sbjct: 472 ALSQEASVQELINIAEDLDMIEILDQQVARQALSDLEYLQCCFG-PQVGISFNRSISSST 530

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             ++L      LI ++   P ++ +  +E+    + E     L  LRK G+S+ +DDFGT
Sbjct: 531 GVSQLLMQTALLIDESGVQPDQVTVEITENAYFESEEHKADGLKLLRKAGVSVAVDDFGT 590

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S   YL    FD +K + + +        +  I+RS+  ++  +   ++A+ +  E +
Sbjct: 591 GYSSFQYLTQCHFDVLKIDRAFVQNIRVNSNQYRIVRSLTELSHQLGLRVVAEGVESETE 650

Query: 924 IKELTRMGCDYIQDSHVASP 943
           ++ L ++G D +Q    A P
Sbjct: 651 LQILAQIGVDSVQGYFFAKP 670


>gi|148253061|ref|YP_001237646.1| hypothetical protein BBta_1522 [Bradyrhizobium sp. BTAi1]
 gi|146405234|gb|ABQ33740.1| hypothetical protein BBta_1522 [Bradyrhizobium sp. BTAi1]
          Length = 295

 Score =  274 bits (700), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 6/288 (2%)

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
           ML  A+LA+Y AK  G N              +   +  +L  A++N EL L Y P +  
Sbjct: 1   MLTQADLALYRAKDEGRNRYCFHAEELDREVREHFTLTNELRAALDNHELELYYQPQVER 60

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
               IVGLEAL++W+HP+ G +    F+ +AE+   I  +  ++L++  R   +WRDQ  
Sbjct: 61  TSGRIVGLEALVRWNHPRRGLLLPDLFIPLAEQTGTICPLGHWVLDQACRQFKAWRDQGI 120

Query: 791 MPPIFILINIASKDLL-DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
            P   + IN+++ +L       E +   + +    P  I+L  +ESV+M   +     L 
Sbjct: 121 APS-RLAINVSAAELCICTGFEEDLAEDLKRWSIGPGEIELELTESVLMETTQIHGDALA 179

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAK 907
           R+ ++G S+ +DDFGT  S L+YL   P D +K     + G  E   AI   R ++ +A+
Sbjct: 180 RVPRLGASIAIDDFGTGYSSLAYLSAYPVDRLKLAQRFILGIPENASAIAITRVMLSLAR 239

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +   ++A+D+  ++ +  L   GC   Q  + +  +      + L+ 
Sbjct: 240 ELGINVVAEDVQTKVQLDFLVSAGCLVGQGFYFSKAVLAERATEFLRR 287


>gi|119945705|ref|YP_943385.1| cyclic-di-GMP regulatory protein [Psychromonas ingrahamii 37]
 gi|119864309|gb|ABM03786.1| regulatory protein for cyclic-di-GMP, EAL domain [Psychromonas
           ingrahamii 37]
          Length = 390

 Score =  274 bits (700), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 4/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           +      ++ +   E+L  A++   L+LVY P + + D E+VG+EAL++W HP  G I  
Sbjct: 126 YSPIFAVNNDLASVEELAQAIKEKALFLVYQPQVTISDREVVGVEALVRWKHPTKGMIPP 185

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AEE  +I AI +F  +   R    WR Q     + + IN++ K L D +L   +
Sbjct: 186 DYFIPMAEENGLIAAITMFTTKTAIRQQGIWRTQGRN--MRMSINMSPKILDDLDLPSKI 243

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           +A +       S++ +  +E+ +  N      +L RLR  G  +++DDFGT  S L  L 
Sbjct: 244 EACVKALGADISKLVIEVTETALTTNLALYMDILARLRMKGFGISIDDFGTGYSSLQQLI 303

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             PF  +K + + +      ++   I +  I +A       +A+ I  E +   L ++GC
Sbjct: 304 RAPFTELKIDRAFIRNIKTDKESYTISKISIMLAHEFGMKAVAEGIETEAEWNILKQLGC 363

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
           D  Q   +  P+    I   +K 
Sbjct: 364 DEGQGYWIGRPMPPEEIESWIKS 386


>gi|260221000|emb|CBA29127.1| hypothetical protein Csp_A10590 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 641

 Score =  274 bits (700), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 110/696 (15%), Positives = 222/696 (31%), Gaps = 88/696 (12%)

Query: 11  FEKAFLILVLFLLWMVS----PSFAIEPINISSSDRVL--DLTSITRIYVNQGEDFQVFT 64
           F +  L L L L          + A  P+   +S+ V   D+ +      +     QV  
Sbjct: 5   FMRWALALCLVLSGSAGAQGSSASATFPVIAINSENVAHTDIGARIAYLQDDTRQLQVNQ 64

Query: 65  AA--DIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDL 122
           A       +            +   W  FAL N +   + R I +P   L     F    
Sbjct: 65  AMADGQPWMPVARTSPNFGFTNNAYWFRFALDNQTGKPVTRFIELPRPFLDDVRLFHFVD 124

Query: 123 GSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPNF 180
           G          E   + R+    + V  + + PG     ++ I++       + LW+P  
Sbjct: 125 GRIITRYSLGDEQPFVQRVMQHQNFVMPLNLEPGRNQ-VVLRIASTGTVEAPLRLWQPAA 183

Query: 181 YKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLS 240
           + +  +   L  G + G+  ++ ++    Y+  R +  I   +     L + +   G+  
Sbjct: 184 FYEAASKENLLAGAVFGMLLVMIVYNLFVYLSTRDANYIYYISFVASYLMFWATLNGYAF 243

Query: 241 KL-VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
            L          +    S      S  +F   +L   R+      +              
Sbjct: 244 ALAWPEAIRWNSVAVPFSIAWACLSASLFADNFLKLYRFSPPAHRVMQGMAL-------- 295

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
                          +++ ++  ++ + Y  +     A +L+ +   +    IG W    
Sbjct: 296 ---------------VSAGLMLGSFVLPYVWIIRATSAFILVVSCAAL---SIGYWRWWL 337

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                     +     V  V ++  +    + A  +                  S   + 
Sbjct: 338 GARFARFYCLSWTAVFVG-VSVLTASKFGWLPANFWVD--------------NASQIGIL 382

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                         +  +L           R+                  +    ++ R 
Sbjct: 383 -------------SLVVLLSFTLADRINTDRSL----------RINAQAVALAHAKKARA 419

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             +  ++A  +    +  R++  +N          +   + + + + + +   +  D+LT
Sbjct: 420 SQQAMLQATADANRELENRVQARTNE---------LHAAMDQLRLANDQLQRLSMTDSLT 470

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
            + NR  F   L T    ++         +++DID +K IND  G   GD  L +L   +
Sbjct: 471 QVGNRAFFDQSLVTEHKRASRLKQPLAL-LLLDIDHFKAINDTYGHPAGDACLRTLADYM 529

Query: 600 GELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
            + ++   D+LAR  G  F ++LI+      +            + +    R +  TASI
Sbjct: 530 RQKVQRAGDLLARYGGEEFAVLLINSTLGDALDLADEFRADIAGLEVVFEGRTLRFTASI 589

Query: 659 GFASWTSSKI-TSSEMLKNAELAMYHAKHRGGNHVE 693
           G AS       T S+ + +A+ A+Y AKH G N V 
Sbjct: 590 GVASAIPDMQFTPSQFVGDADKALYEAKHGGRNCVR 625


>gi|307721270|ref|YP_003892410.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979363|gb|ADN09398.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 598

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 172/433 (39%), Gaps = 36/433 (8%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+    +    + D+LTG+ N+    + L           N    ++++DI+ +  IN+ 
Sbjct: 189 KEIENKLQRMLYYDSLTGLHNKTYLDEIL---------SKNKEQILLLLDINNFSYINNT 239

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI- 641
            G  +GD +L+ +   + + L     + +L  ++F I+L  + +   I      +++   
Sbjct: 240 YGFEIGDKLLIQVANILNKEL-KYQKICKLEADQFAIVLGPDTD---IKKDVEKIKEYFY 295

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
           A  + +    + ++ + G A+          + K+A +++ HAK RG + +  F      
Sbjct: 296 AHELLIDSIALNISFTYGAATGN------ENLFKHAIISLKHAKGRGRSSLYIFNNEEED 349

Query: 702 SDRVM----IK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                    I+    L  A+ + ++   +  I       I  +EAL +        +S  
Sbjct: 350 ICFAKRKQFIEANNILYNALASDKIIPFFQGIRDNRSGTITKVEALARIK-KDEEILSPY 408

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  A    +I  I   M+++  + +               INI   DL+ + + E + 
Sbjct: 409 LFLEPAHSSGLIPEITKIMIDKTFKIMA-------DNDYTFSINITEDDLIRHYILEYLN 461

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
              ++     +R+ L   E +     +     L  L++ G S+ +DDFG + S    +  
Sbjct: 462 KKSAQYNILLARVTLEILEGISASGKKNHIKQLSSLKEKGYSIAIDDFGVEYSNFERILN 521

Query: 876 IPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +   +       K   I ++I+  AKN     +A+ ++ E   K +  +G +
Sbjct: 522 LDIDFLKIDAKYIKDIDTNPKSYEITKAIVFFAKNANIPCVAEFVHNESVQKVVEDLGIE 581

Query: 934 YIQDSHVASPLGF 946
           Y Q  + + P   
Sbjct: 582 YSQGYYFSEPSPL 594


>gi|253996728|ref|YP_003048792.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
 gi|253983407|gb|ACT48265.1| diguanylate cyclase/phosphodiesterase [Methylotenera mobilis JLW8]
          Length = 587

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 94/431 (21%), Positives = 181/431 (41%), Gaps = 19/431 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D  TG+PN Q     +      +     L    + I+ DK +KI         D   + 
Sbjct: 153 FDLTTGLPNHQLMHKLIKKAEAENINLGLLLLN-LNINPDKERKI-------STDQPTLE 204

Query: 595 LT--RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
           L     I + L     L  +S N F II+   +   ++   A  +  +    + L+   +
Sbjct: 205 LAAVDLIQQHLSKDTRLFHISPNEFAIIIEDLHFPAQLNLIASELIHAFESSLPLVNNSL 264

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDRVMIKEDL 711
            V    G  +       +  + + A+LA++HA        +    ++S  S    ++E +
Sbjct: 265 IVKPYFGGVTTFKHTSKAHSLYECAKLALHHAMINHYQIEMYDQHITSVFSSTHSLEEAI 324

Query: 712 CLAVENSELYLVYHPIIRLMDEEI-----VGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
             A++N+EL +   PI+ L   E+     V  E L++W + +W  IS    +    +   
Sbjct: 325 IEALQNNELEVYLQPIVSLPKHELGHATCVSAEMLLRWHNEEWVGISPMRLIDTIYKKGF 384

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            K    +++    + I       N     + +N++S DLLD +L E +   I+       
Sbjct: 385 GKIFIRWLINTACQRIAEVIA-TNQNDFALTVNLSSPDLLDADLPELIAQSIALWDIPAK 443

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + +  +ES ++ + +++  ++ R+ ++G S  LDDFGT  S ++ L  +P   VK + S
Sbjct: 444 SLVIEITESDLLLDEKKAMSVINRISQLGCSFALDDFGTGYSSMTRLRNMPISLVKIDQS 503

Query: 887 LMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    +  +   I+ SII +A ++  T++A+ +     +  LT M CD IQ  + +  +
Sbjct: 504 FVKQIDKSTQDREIVLSIIQLAHSLGKTVVAEGVEDLSCLNILTEMQCDKIQGYYYSKSM 563

Query: 945 GFNSILKLLKE 955
             N     L  
Sbjct: 564 SLNDFNVWLAN 574


>gi|218549484|ref|YP_002383275.1| sensor protein [Escherichia fergusonii ATCC 35469]
 gi|218357025|emb|CAQ89656.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia fergusonii ATCC 35469]
          Length = 1105

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWMQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   + E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAVEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + I E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQADAHIERAAMSIDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWGC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +        F     +  +  A++  +L    +             + I + ++   L  
Sbjct: 900  EGEIFDEQTFRRSFGDPALNHALDRRVLHEFFQQTAKAIASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      V+ + E       +LR  G  + L   G   
Sbjct: 957  AALVNELLEQLENSPLPPRLLHLIIPAEAVIDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNTLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +              ER +LA    G  +W+W++  D  +    +  +  +
Sbjct: 405 LYFIAQIEDINELKRTEHINKRLMERITLANEAGGIGIWEWELKPDIFSWDKRMFELYEI 464

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 465 PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALAN 521

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 522 RVLNKEGEVERLLGINMDMTEVKQLNE 548



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 82/293 (27%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                        SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRSFFIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG     +      +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYNQDEL--RALTFQQLTWPEDLNKDLQQVEKLINGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R         W ++ +  + +++G  L +I    DI E K++       
Sbjct: 375 SMEKRYYNRTGDIVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEHINKRL 427


>gi|296272780|ref|YP_003655411.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096954|gb|ADG92904.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 660

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 84/551 (15%), Positives = 206/551 (37%), Gaps = 58/551 (10%)

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG 473
           S +I+   DI       + + + + G     + G   + L   H ++       +   + 
Sbjct: 155 SSNIISKTDIEGKITYVSDNFSRVTGYTKEELLGRTHSVLK--HKDNSPLLYKEMWHTIK 212

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             +       +  +   + +++   I P+ + +G+I+ +I                   A
Sbjct: 213 VEKKEWHGILKNVSKSGKVYYIKSTIMPLLDLSGNIIEFI-------------------A 253

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F+D++    N     D+   +L+    ++     ++++ I+++  ++    I   D +  
Sbjct: 254 FRDSV----N-VVLDDK-KHLLNKIELNNLSL--LILVQIEEFDILDKFYNILKVDQIEK 305

Query: 594 SLTRRIGELLKFPDI---LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI----- 645
           +    +   L    I   +  L   R+ ++     +        + +   + + +     
Sbjct: 306 TFASNLLAYLPDNYIFEDVYALGDGRYALL----TDYYAFEKLNMKIHDYLEIFVKNVTE 361

Query: 646 ---NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               +   E  +   I +A          +     E ++   K    ++  S + +    
Sbjct: 362 SILEIDGIEYDLNIIISYAC--GKYSLYEDAKAGLEESIDKNKVINYSNDSSIKTNQEAK 419

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               + + + +A++N ++   + PII    +EI   E+L++  +     IS  EF+ I++
Sbjct: 420 KNFEVIKMVKIALDNYKIVSYFQPIINNKTKEIEKYESLVRLINENGEVISPVEFLNISK 479

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +      I   +LE   + +       +     + IN+++ D+   +  + +  L+ K  
Sbjct: 480 KGNYYNKITSRVLENSFKML-------DFVNTKLSINLSALDIEKEQTRKEIFNLLDKYK 532

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              +RI     E   + + +  +L + ++++ G+ + +DDFG   S    L     D +K
Sbjct: 533 DDNNRIVFELLEDENVKDFKSIKLFIRKVKRRGVLIAIDDFGAGYSNFERLLDFEPDILK 592

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GSL+    +      I+ +I+  AK      IA+ +  E     L  +G DY Q  + 
Sbjct: 593 IDGSLVKNIEKDSFSRNIIETIVTFAKKQNILTIAEYVENESIFNLLNEIGVDYSQGYYF 652

Query: 941 ASPLGFNSILK 951
             P     ++K
Sbjct: 653 GKP---EDLIK 660


>gi|152964321|ref|YP_001360105.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
 gi|151358838|gb|ABS01841.1| diguanylate cyclase/phosphodiesterase [Kineococcus radiotolerans
           SRS30216]
          Length = 731

 Score =  273 bits (699), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 104/478 (21%), Positives = 199/478 (41%), Gaps = 35/478 (7%)

Query: 485 VRAADNQFHW-MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           ++  D +  W ++  +  +    G I + +             + +   A  D LTG+PN
Sbjct: 245 LQPGDGRLRWSVVWAVLAVLPVAGRIRQLVRGLV-------HHDRVQREAATDELTGLPN 297

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R++F   L T      T +    TV++ID+D++K++ND  G A GD +L  ++R    +L
Sbjct: 298 RRAFTAALETA-----TRERRPATVLLIDLDRFKEVNDRYGHATGDRLLQHVSRAFTGVL 352

Query: 604 KFPDILARLSGNRFGIIL---ISENNSLKIADFAIAM-RKSIAMPINLLEREITVTASIG 659
               +LARL G+ F ++L       +       A  +   +   P+   +    V AS+G
Sbjct: 353 PAGALLARLGGDEFAVLLTAAPHAGDPDLSLRTAHHVGTAAERDPL---DGVHQVVASVG 409

Query: 660 FASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM-IKEDLCL---- 713
             +      +   ++L+ A+ AMY AK  GG        ++ R  R   +   L      
Sbjct: 410 VVTTDGLQHLQGEDLLRRADAAMYVAKAGGGGVGVHDDAAARRWRRHEALALGLLDTFSP 469

Query: 714 ---AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
              A    E  + Y P +        G+ A ++W HP  G +   EF+ +AEEL ++  +
Sbjct: 470 AAGATTREEFEVHYEPQVTREGWT-AGVRASLRWSHPVLGVLDPPEFLGVAEELRLLPEL 528

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++ R   D+  WR   +   + +   +    L D  L + + A+++     P  + +
Sbjct: 529 TTHLVTRGCADLARWRAAGHD--VRLSFPVDPLQLTDPRLLDLLDAVVAA-GTDPRLLVV 585

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             + +V   +PE +      +   G  L++DDFGT    L++L  +P   V  + +L   
Sbjct: 586 GTTAAVFADDPESATRTCREIDARGCGLSIDDFGTGWPSLAHLAALPVGEVTVDAALTAR 645

Query: 891 --STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +   ++ + +  A ++   ++A  +     +  L  MGCD  +      P+  
Sbjct: 646 LLLDPRVATVVAAAVGFAHHLGLRVVADGVADATTLDLLHGMGCDLTRGPLHGRPVPA 703


>gi|83316502|gb|ABC02428.1| hypothetical protein [Bacillus weihenstephanensis]
          Length = 219

 Score =  273 bits (699), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 3/217 (1%)

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           I+W HPK G +S ++F+ +AEE   I  +  ++L     +   W +Q     + + +N++
Sbjct: 1   IRWKHPKLGIVSPAQFIPLAEETGFIIELGNWILRTACLEAKKWHNQ-GFSHLKVGVNLS 59

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
                 ++L   +  ++ +T   P  + +  +ES+ +         L  L+ +GI +++D
Sbjct: 60  VVQFNRSDLIPTISKVLEETELKPEALDIEITESIAINQNHSVIAKLEELQNLGIQISID 119

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L+YL   P +T+K     + G   +    AI+ SII ++K +   +IA+ + 
Sbjct: 120 DFGTGYSSLAYLTKYPINTLKIAREFICGITNSPLEEAIIASIITLSKELNLEVIAEGVE 179

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            E   K L    CD+IQ    + P+    + +LL ++
Sbjct: 180 TEEQWKFLHEQNCDHIQGFLFSKPVSSKDVWRLLHKK 216


>gi|83594823|ref|YP_428575.1| diguanylate phosphodiesterase [Rhodospirillum rubrum ATCC 11170]
 gi|83577737|gb|ABC24288.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Rhodospirillum rubrum
           ATCC 11170]
          Length = 393

 Score =  273 bits (699), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 4/252 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E+L L +E  EL L Y P I +    +   EAL++W++ + G I    F+ +AE   ++ 
Sbjct: 135 EELALGIEARELVLFYQPKIEVATGAVSSAEALVRWNNGRRGLIFPGSFIPLAETSGLMS 194

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L++   D  +W      P   + +N+++  L+D +L + + A + K     S +
Sbjct: 195 TMTDMVLDQALFDRAAWGALGFSPA--VAVNLSASALVDLDLPDRVGASLHKHGVPASAL 252

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E+  M +   S  +L RLR  G  +++DDFGT  S L+ L  +PF  +K + S  
Sbjct: 253 ILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRLPFTELKIDRSFT 312

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 +    I+ +II MA  +   ++A+ +     ++ L  M CD  Q  H    + +
Sbjct: 313 MEIHHDKDSRIIVDAIIRMAHAMGLRVVAEGVETAEQLRILADMECDAAQGYHFCRAVPY 372

Query: 947 NSILKLLKERFP 958
           +  +  L+ R P
Sbjct: 373 DKFIAFLESREP 384


>gi|37680326|ref|NP_934935.1| hypothetical protein VV2142 [Vibrio vulnificus YJ016]
 gi|37199073|dbj|BAC94906.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 826

 Score =  273 bits (699), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 95/560 (16%), Positives = 203/560 (36%), Gaps = 33/560 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             +      E            +   D     +        + G     + G        
Sbjct: 126 LLRDADEVAELFYRLFENDHHGILVTDEETRILACNAYFERLTGYHRRDLIG----LKSR 181

Query: 456 IHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           I   D+  ++F   +   +    G        R +  +     + I+ ++ +  D   +I
Sbjct: 182 IFNADKHSEHFYQSMWHALATE-GSWSGAILTRTSGGENTPQDLTIQKVTLAGRD--YFI 238

Query: 514 GIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           G + D+ T   +  +        D LT +P+++ FL  L          ++ + T++++ 
Sbjct: 239 GFSADLSTHLNRLNDREKGG--IDLLTQLPSKEKFLRLLEVW----HQSESDKSTLLLL- 291

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-KIA 631
                 I      +   +      + + E      ++  L  +RF + L  E++S   + 
Sbjct: 292 -----AIQPNFSYSTELNAKREFAQFLFEHSHNH-LVGYLGNDRFVVGLEIEHHSHISLI 345

Query: 632 DFAIAMRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
                  K         + E++        G +       T + +  +A  A+       
Sbjct: 346 RQVRQRMKRFFHGFKQAKGEVSQALTQGKTGVSVLGVDAKTPAALFTHANQALLEMHSGQ 405

Query: 689 GNHVESFRVSSFRSD--RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
             H+  +  +       +  ++  L   +E   + + Y PII L    +   EAL ++  
Sbjct: 406 QRHISFYDHAMHLQIEKKKRLETLLLECIEQKTIEVHYQPIIDLQQWRVDKFEALCRFPP 465

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA-SKDL 805
                 S  E + IAE+L MI+ ++  +  +   D+   +     P + I  N + S   
Sbjct: 466 ALSQEASVQELINIAEDLDMIEILDQQVARQALSDLEYLQCCFG-PQVGISFNRSISSST 524

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             ++L      LI ++   P ++ +  +E+    + E     L  LRK G+S+ +DDFGT
Sbjct: 525 GVSQLLMQTALLIDESGVQPDQVTVEITENAYFESEEHKADGLKLLRKAGVSVAVDDFGT 584

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S   YL    FD +K + + +        +  I+RS+  ++  +   ++A+ +  E +
Sbjct: 585 GYSSFQYLTQCHFDVLKIDRAFVQNIRVNSNQYRIVRSLTELSHQLGLRVVAEGVESETE 644

Query: 924 IKELTRMGCDYIQDSHVASP 943
           ++ L ++G D +Q    A P
Sbjct: 645 LQILAQIGVDSVQGYFFAKP 664


>gi|283786119|ref|YP_003365984.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282949573|emb|CBG89191.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 746

 Score =  273 bits (699), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 177/459 (38%), Gaps = 27/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ YI +    T Q+         AF D +  +PN ++    L +              +
Sbjct: 308 IVNYIAVLA--TRQRTVNGRARRLAFLDPVVHLPNLRALNRDLRSA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + + + + +    GI +       L+  I E L   + + ++SG    + L +E++  
Sbjct: 357 CFLHVPELEILVKHYGIMLRIQYKQQLSHWITEKLGPGESVYQMSGPDLLLRLNTESHQQ 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML----KNAELAMYHA 684
           +I      +++                  + +    S     S +L      AEL++   
Sbjct: 417 RIEALDEYIKQF---RFIWDGMSFQPQVGVSYCYVRSPVSHISLLLGEMSTIAELSVMTN 473

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  +     D+V +   L  A+E+    LV  PI  +  +  +  E L++ 
Sbjct: 474 SPENLERRGAMNLQRNLKDKVKMMNHLQHALEHDLFCLVAQPIQGIRGD--IFHEVLLRL 531

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
              +   I    F+ +A E  +   I+L+++E   R +   R           +N+++  
Sbjct: 532 QDEEGEVIQPEVFLPVAHEFGLASRIDLWVIEHTLRFMAEHRAAMPAR--RFALNLSAPS 589

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        +  L+SK      ++    +ES  + N E+++  L  L+++G  + +DDFG
Sbjct: 590 ICRANFSREVSKLLSKYQIEAWQLIFEVTESYALLNAEQAQATLRDLQQLGCRIAIDDFG 649

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  I  D +K +GS +           I+ SI  +A+  +  ++A+ +  E 
Sbjct: 650 TGYASYARLKDINADILKIDGSFIRNMISNSLDYQIVASICHLARMKKMQVVAEFVESEE 709

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
               +  +G DY+Q   +  P     +++ L    P+ +
Sbjct: 710 IRSAVASLGIDYMQGFLIGEPQS---LMETLDTPAPVTR 745


>gi|94500577|ref|ZP_01307108.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
 gi|94427367|gb|EAT12346.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Oceanobacter sp. RED65]
          Length = 690

 Score =  273 bits (699), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/588 (18%), Positives = 235/588 (39%), Gaps = 25/588 (4%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + PA     +L V+L     ++           +    +R  + +  + D +  +     
Sbjct: 106 LVPAGEYNHILQVVLREIKNLKLRRELREAEALLREAEKRCQVLLESAQDAI-AYVQDGM 164

Query: 427 RVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            +      A I G   +  +       +  +   D+  F+  L  F   +    +++ ++
Sbjct: 165 HLFVNDSYANIFGYEDADDLLTMP--LMDMVSTKDQGRFKIFLKDFNSGKTRSGEFQCKM 222

Query: 486 RA-ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
              AD +    ++  R   +    I     I    T        +   + QD LTG+ N+
Sbjct: 223 LNVADKEIDTRMLFARATYDDEPCIQ---VIIRANTGNADLEHKLKQISSQDLLTGLYNK 279

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           Q F ++L   +D +      +  +  I+ID + +    +GI   D V+  +   I    +
Sbjct: 280 QYFNEQLGDAVDQAVI-GGAKGAIAYINIDNFGQCKGSIGIEGADLVICDVAHLIRSKCR 338

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP-INLLEREITVTASIGFASW 663
             D++AR+  + FGI+L   +N+ +   FA  +RK+I    + + +R I VT SIG A  
Sbjct: 339 EEDLVARIGEDVFGILLSG-SNAEQAQGFAEHIRKAIEEHLVAVDQRTIQVTVSIGLALI 397

Query: 664 TSSKITSSEMLKNAELAMYHAKH-----RGGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
             S     E+L++A  A YH +      +G             SD   ++  +  A+ ++
Sbjct: 398 NDSSRNPKEVLQHAHEASYHVRKLEGHDKGNGVYLYNPAQLAGSDSERLQAKVEEAINDN 457

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
              L++ P+I L DE     E L++       ++S  +F+       + + ++ +++   
Sbjct: 458 NFKLLFQPVINLRDEAGEHYETLLRLVD-DGSDVSPQDFLSEIP-TDLKRKVDRWVILNT 515

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
           ++ +   R + N   +F  IN+ ++ L+D  L   +Q ++  +      +   FSES  +
Sbjct: 516 SKRLAKQRSEGNDTRLF--INLTNESLIDESLIPWLQKVLQASKVPSGSMIFQFSESDAI 573

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI 898
            + ++++ +   L K+G  + +  FG+         ++  D VK +GS        +   
Sbjct: 574 NHLKQAQAMTKTLAKLGCKVAITRFGSGIDPFKLFEHLHVDLVKIDGSFTKELNTDKG-- 631

Query: 899 LRSIIPMAKNIE---TTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + S+  +   I       I   +     + +L   G  +IQ  ++  P
Sbjct: 632 MDSLKELLAKIGEYEKASIVPFVENANIVAQLWTSGVSFIQGYYLQGP 679


>gi|260776153|ref|ZP_05885048.1| hypothetical protein VIC_001537 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607376|gb|EEX33641.1| hypothetical protein VIC_001537 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 829

 Score =  273 bits (699), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/548 (17%), Positives = 207/548 (37%), Gaps = 36/548 (6%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR 476
            V   D     +        I G     + G   N L        D +R +  S   +  
Sbjct: 143 GVLVTDSETRILACNRHFERITGHQLEDILGLKTNILNA-EKLSADYYRDLWHSIERH-- 199

Query: 477 GRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQD 536
           G        + ADN      + I  +   NG+   ++G+  D++ Q   ++        D
Sbjct: 200 GHWSGPMLTKKADNSVLPQELTIHKIEPGNGE-SYFLGLCADLSNQLHRIDDRETGGV-D 257

Query: 537 NLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
            LT +P+ + FL++L         +      +M+    ++   N+             + 
Sbjct: 258 LLTQLPSPERFLEQLD---KEYGDNQGEELLIMLALQPQFPLANE-----------QEVK 303

Query: 597 RRIGELLKFPDIL---ARLSGNRFGIILISENNSL-KIADFAIAMRKSIAMPINLLEREI 652
           R+    +    ++   + +   RF + L  EN+   +       M K+        +  +
Sbjct: 304 RQFASYIAENSLVPYASYIGDGRFAVTLSVENSQGTENVRAIRKMIKAFFHSFKHAQGTV 363

Query: 653 TVTASIG---FASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMI 707
             +   G    +   S   +  ++L +A  ++   H+            +      +  +
Sbjct: 364 AQSLKFGLTGVSVMHSDAKSPRQLLSHALQSLLELHSGESKRIAFYDREIHEQVERKKQL 423

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  +  A+    + + + PII +    I   EAL ++   +  + S+ E + I E+L +I
Sbjct: 424 ESWVEQAILAETIDVFFQPIIDIKKGRIDKFEALCRFPVNETTSASTQELINIVEDLDLI 483

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ---ALISKTLYS 824
            +++  +  +    +   +       + + +N +       ++ E ++    LI ++   
Sbjct: 484 VSLDDVVNRKAMSVLPELQQLFGDH-VGLSVNRSFNT--KQDIAEILRHSAQLIDQSGIK 540

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + + F+ES           LL  +RK G+S+ +DDFGT C+   YL    FD +K +
Sbjct: 541 PDMLTIEFTESAYFDGDSYQEQLLAAIRKAGVSIAVDDFGTGCASFDYLNKSYFDVLKID 600

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S + G     ++  ++ +II +A+ ++  ++A+ +    +   L  +G D IQ    + 
Sbjct: 601 RSFVQGIRFASRQYHVVNTIIQLAQKLKLKVVAEGVETRDEYLTLRSLGVDCIQGYFFSK 660

Query: 943 PLGFNSIL 950
           PL   ++ 
Sbjct: 661 PLPIEALR 668


>gi|114331019|ref|YP_747241.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nitrosomonas eutropha C91]
 gi|114308033|gb|ABI59276.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nitrosomonas eutropha C91]
          Length = 415

 Score =  273 bits (699), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 127/249 (51%), Gaps = 4/249 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E +  A+ + EL   Y P +R+   EIVG+E L++W HP  G I  ++F+  AE+  +I 
Sbjct: 150 EAIKNALNSGELVNYYQPKVRVETGEIVGVETLVRWHHPVDGVIYPNQFIGAAEKYGLIN 209

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +LE+       W+       + + +N++  +L   +  + +  L ++T   P+RI
Sbjct: 210 HLTQTVLEQAFAQAGIWQKLG--CDLKVAVNVSMDNLTSLDFQDTVVRLAAETEIPPNRI 267

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +ES +MG+      +L RLR     L++DDFGT  S L+ L  IPFD +K +   +
Sbjct: 268 VLEITESQLMGDERVLLEILTRLRLKRFHLSIDDFGTGHSSLTQLRDIPFDELKIDQGFV 327

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             +++     AI  + + +AK +   ++A+ +    D + L + GCD  Q + +A P+  
Sbjct: 328 HHASKDVTLRAIYDASLALAKQLNMEVVAEGVESREDWELLRQTGCDLAQGNFIAQPMPA 387

Query: 947 NSILKLLKE 955
             +   +K+
Sbjct: 388 EELGGWVKK 396


>gi|262042116|ref|ZP_06015291.1| inner membrane protein YfgF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040546|gb|EEW41642.1| inner membrane protein YfgF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 742

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 173/438 (39%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+     +   AF D +  +PN ++    L         +     T+  + I + + +
Sbjct: 317 TQQRLIYARVRQMAFLDPVVHMPNLRALSRAL---------NGTSWSTLCFLRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   +  LL+  + +  L+G+     L SE +  +I     ++R+
Sbjct: 368 GRHYGVLLRVQYKQMLANHLRTLLQPNEAVYHLAGHDLVFRLNSEGHQARIHLIDRSLRQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                 +     +   +  S          +     E+   A++++            + 
Sbjct: 428 F---RFHWDGVPLQPRIGMSYCNVRSPVKHLYLLLGELNTIADMSLASGHPENLQRRGAG 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V     D+V++   +  A+E+    L+  PI  +  +     E L++ +         +
Sbjct: 485 HVQQDLKDKVVMMNRILKALEHDHFVLMAQPIQGIRGDR--YHEVLVRMEGESGELTGPN 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +A E  +   ++ +++E     + + R       + + IN++   L  ++  + ++
Sbjct: 543 EFLPVAHEFGLSTRVDQWVIEHTLAFMDANRRALPG--LRLAINLSPVSLSRSQFPQEVE 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+      P +I    +E+  + NPE     L  LR +G  + +DDFGT  +  + L  
Sbjct: 601 ALLQAYNIEPWQIIFELTENYALSNPELVCQTLEHLRALGCRVAIDDFGTGYASYARLKT 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +     +     ++ SI  +A+     ++A+ +      + +  +G D
Sbjct: 661 MNVDILKIDGSFIRNLLASSLDYQVVDSICRLARMKNMQVVAEYVESPEIRQAVITLGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P+    + +
Sbjct: 721 YMQGYDIGVPVPLTQLAE 738


>gi|324114260|gb|EGC08232.1| GGDEF domain-containing protein [Escherichia fergusonii B253]
          Length = 1105

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWMQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   + E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYRFIWEGRVHRVGASAGITLIDDNNHQAVEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + I E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQADAHIERAAMSIDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWGC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +        F     +  +  A++  +L    +             + I + ++   L  
Sbjct: 900  EGEIFDEQTFRRSFSDPALNHALDRRVLHEFFQQTAKAIASKG---LSIALPLSVTGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +   P  + L      V+ + E       +LR  G  + L   G   
Sbjct: 957  AALVNELLEQLENSPLPPRLLHLIIPAEAVIDHAESV----QKLRLAGCRIVLSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNTLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGVKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 84.2 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ +              ER +LA    G  +W+W++  D  +    +  +  +
Sbjct: 405 LYFIAQIEDINELKRTEHINKRLMERITLANEAGGIGIWEWELKPDIFSWDKRMFELYEI 464

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +    + W   +   DR +   ++   +   R   + EFR+   D     +     
Sbjct: 465 PPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALAN 521

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLE 527
            + N  G++ R +GI  D+TE K+  E
Sbjct: 522 RVLNKEGEVERLLGINMDMTEVKQLNE 548



 Score = 84.2 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 82/293 (27%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                        SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRSFFIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + T   +   LG     +      +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQTNKALCQFLGYNQDEL--RALTFQQLTWPEDLNKDLQQVEKLINGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R         W ++ +  + +++G  L +I    DI E K++       
Sbjct: 375 SMEKRYYNRTGDIVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEHINKRL 427


>gi|313115317|ref|ZP_07800792.1| diguanylate cyclase domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622348|gb|EFQ05828.1| diguanylate cyclase domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1011

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 228/653 (34%), Gaps = 71/653 (10%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVI 387
           +  +      VL   A  +  +  I +   +       ++    +   V  ++       
Sbjct: 368 WLLIGTVNSKVLFAFADNVRNVIAIAIVFTLVLGALGSLVIARNLAHPV-ELLYHEVVDG 426

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSG--------------------DIVWDWDIVRDR 427
           Q        S     + +R + A+                           ++       
Sbjct: 427 QEKKQFPQLSHTNIRELDRLADALTSLNSELLNNSTKFLRIMDMASVELGGYELRFDTGS 486

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYE---FR 484
           V  T +   +LG +      P  ++L          F   L +           E     
Sbjct: 487 VYVTDNFFALLGASQ-----PKDHFLS------VRRFEEKLSNIQLSHPCTTTAEGDKIL 535

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
               + +  ++++R+        D    +G+A D+T        I      D LTG+ NR
Sbjct: 536 TIRREGETRYIMLRVT------NDQTTQVGLAEDVTATTLERMRIEHERDYDILTGLYNR 589

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
           Q+F  R++  L        +   ++++D+D  K IND  G   GD  +    R + E   
Sbjct: 590 QAFH-RVSEELFRDPHQLGV-AALLMMDLDNLKHINDTYGHDWGDQYIHRTGRCLAENTP 647

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL--LEREITVTASIGFAS 662
              +++RLSG+ F ++    ++  +I +    +  ++   + +     E+ ++ S G A 
Sbjct: 648 NGTVVSRLSGDEFVLLFYGYSSQDQIREKIRTLSSAMQKSVAILPSGNELRISISGGVAW 707

Query: 663 WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKEDLCLAVENSEL 720
           + ++      + K A+ A+Y  K     H+E F +  ++ +     ++ D    +    +
Sbjct: 708 YPANGTDMDILKKYADFALYQVKRTNKGHLEEFSMEIYQQEAQAAQLRRDFQQLLTEERV 767

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
           Y V+ P+      + +  EAL++ D       S +  M +A E   +  I      +   
Sbjct: 768 YYVFQPVFSARTGKAMAYEALMRSDMEA--LRSPATIMKLAREQGALCEIERLTFFKSLE 825

Query: 781 DIISWRDQAN-MPPIFILINIASKDLL----DNELCEGMQALISKTLYSPSRIKLSFSES 835
           +    R +        + IN +   +     D+E  +               +       
Sbjct: 826 NFDHLRSEGLVRRDTMLFIN-SIASICLPREDSEYMDS-----RWHELRRQMVI------ 873

Query: 836 VVMGNPERSRLLLGRLRKI-GIS--LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
            +    E +   L   R   G S    LDD+G+  +  + L  +    +K + +++ G  
Sbjct: 874 EITEEEEINHEALEVKRHAPGFSGMFALDDYGSGFANENSLLELSPRFIKVDIAIIRGID 933

Query: 893 --EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
               +  I+++I+  A      IIA+ +    +++++  +G D +Q   +A P
Sbjct: 934 TDPDKQQIVQNIVAYAHPRNMKIIAEGVETAAELRKVIELGADALQGYFLAKP 986


>gi|169342297|ref|ZP_02863373.1| putative diguanylate cyclase [Clostridium perfringens C str.
           JGS1495]
 gi|169299604|gb|EDS81664.1| putative diguanylate cyclase [Clostridium perfringens C str.
           JGS1495]
          Length = 507

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 95/426 (22%), Positives = 177/426 (41%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R  F + L               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFEFKNDLEMW--------KGEYTLFLIDLRKFSLINDALGRDKGDEVLREF 138

Query: 596 TRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + +  +   L   ++     G  F + + S  N   I +    +     + +N L +EI
Sbjct: 139 GKVLNNISKSLASKNLYGVYGGEEFLVAINS-KNKEDIIEVLNKLDNLKKIRLNSLNKEI 197

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +  +IG++       +  E+++    A   AK    +    +        +    I  D
Sbjct: 198 KMEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEAFSSSIEYTEELKSIRKKNNLIIRD 256

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  ++ N +LY VY P I  +D++I G E LI+W+H   G+IS+S+ +   EE+  IK +
Sbjct: 257 IKDSLINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDL 316

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L++ E             N   +   +NI+   L    +   +  +       P  I L
Sbjct: 317 DLYVFESTCEFQSRLIQ--NNIELQCSVNISVNTLKHRGVGSNLYKISKNYNLKPENITL 374

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++ 
Sbjct: 375 EILENANLEISGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISD 434

Query: 891 S-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     
Sbjct: 435 IPNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEF 494

Query: 950 LKLLKE 955
           L+ +  
Sbjct: 495 LEYVNN 500


>gi|317057096|ref|YP_004105563.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
 gi|315449365|gb|ADU22929.1| diguanylate cyclase/phosphodiesterase [Ruminococcus albus 7]
          Length = 453

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 188/474 (39%), Gaps = 34/474 (7%)

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIAND--ITEQKKSLEGILCNAFQDNLTGIPNR 544
             D ++     + + M    G    +IG   +  I E+             D  +G+ N 
Sbjct: 2   NKDGEYVICTCKGKVMR---GKPDIFIGSIENHGIAERV------------DAASGLYNV 46

Query: 545 QSFLDRLTTILDLSATDDNLRPTV-MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
             FL  +   L LS         V ++I I+ + +IND+ G + GD VL  +   +  ++
Sbjct: 47  YEFLQDIRD-LKLSGQT-----AVELLIGINCFSEINDMYGYSFGDKVLKQVGMVLKNVI 100

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                + R+ G +F   L        I D    ++  +   + +    I V  S G    
Sbjct: 101 GSRSKVYRMDGAKFACCLTDVA-VGYIYDLYRKIQFEMKYNVFVDNIRIPVCISAGALLL 159

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENS--E 719
                    +  +A  A+  +KH     +  F  +   + R  +     L  ++ N    
Sbjct: 160 DGEYDEF-SVQSSARYALERSKHEHHGELYVFENNMKDTTRRRLGLMSALRKSMVNDYDG 218

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
            ++ Y P++    EE++G EAL++W+   +G +   EF+ + E       +  ++L R  
Sbjct: 219 FFMCYQPLMSSDKEELIGAEALLRWNSEDFGTVMPGEFIPMLENDPSFFELGCWILRRSM 278

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            + +   ++   P   + +NIA   L      E ++A++ +T + P  + +  +ES    
Sbjct: 279 NESMIMVEKY--PDFTLNVNIAYTQLSHPLFRESVKAILKETGFPPKNLCMELTESCRQL 336

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
                +  +  L+ +GI + +DDFGT  S L+ L  +  +T+KF+              A
Sbjct: 337 EKSYLQAEINFLKGLGIRIAIDDFGTGFSSLNLLSDLSVETLKFDRGFTKDIMTNTANQA 396

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           I+++I   A+ ++  +  + +     I    +      Q  + + P+  +  L+
Sbjct: 397 IIKAITGCARELQVHVCLEGMETREMIDFARQYCIYSYQGYYFSRPVVIDVFLQ 450


>gi|30248841|ref|NP_840911.1| domain of unknown function 2 [Nitrosomonas europaea ATCC 19718]
 gi|30180436|emb|CAD84748.1| Domain of unknown function 2 [Nitrosomonas europaea ATCC 19718]
          Length = 328

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 112/240 (46%), Gaps = 5/240 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  AV   +L L Y PI+ L  ++I G EAL++W HP  G +   +F+ +AE   ++
Sbjct: 11  ATQLAQAVVLGQLELHYQPIVDLRSDQIAGAEALLRWRHPSLGLLPPGQFLPVAESSGLM 70

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L    + +  W       P  + +N++++ +      + +Q  ++        
Sbjct: 71  PEIGAWVLREACQQMHEWLPVQWR-PFRLAVNVSARQVG-PGFDDQVQQALAAAGLLAEY 128

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +++  +ES   G+P     LL  LR IG+    DDFGT  S L +L   P  T+K + S 
Sbjct: 129 LEIELTESAAFGDPAIF-PLLDALRAIGVRFAADDFGTGYSCLQHLKCCPITTLKIDQSF 187

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G     +   I+R++I +A  +   ++A+ +     + +L    CD +Q    A P+ 
Sbjct: 188 VAGIVDDTRDQTIVRAVIQLAHGLGMEVVAEGVETPASLTQLRLADCDAVQGFLFAKPMP 247


>gi|312879136|ref|ZP_07738936.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782427|gb|EFQ22825.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 662

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/517 (20%), Positives = 182/517 (35%), Gaps = 41/517 (7%)

Query: 210 YMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRAC---SEIALSSSLI 266
           +     S+      +  V L  I+             +G   +         I L+ SL 
Sbjct: 152 WTFLTGSVYGAFALINIVRLVRITSGADASWGDFFAANGFETLIVFLYQLLSILLTYSLT 211

Query: 267 IFL--FMYLHWNRWHAKVGYITFS--GIACIAILF-CMSFYYPMVTASIARITLASIVLY 321
           + +   + L       K      S   +  +A L   +          I        V  
Sbjct: 212 LMVTRRLLLDVRAQEEKFSRAFRSAPYVLTLARLSDGLIREVNEGFVGITGYAYDEAVGR 271

Query: 322 YTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVIL 381
               +    ++   RA              +   +  T  + +      L  G  ++  L
Sbjct: 272 TFSELGLWAVESDRRA--------------VVEALVKTGSVRDREYPFRLRSGETMLGAL 317

Query: 382 IGFT-----------VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT 430
              T            I  V         +    E+       S D +W  D        
Sbjct: 318 SSDTLEIGGETCVLSSITDVTDRRRMEDALRESEEKFRYMAEHSSDTIWHTDAECRFTYV 377

Query: 431 TPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT-----ILDSFVGYRRGRLQYEFRV 485
           +P    + G     + G        +     ++ R        +       G L+YE  +
Sbjct: 378 SPADERMRGFTQDEVVGT--TVWSLLKPEGVEHVRRLSAQYAAEGRTDAGTGALRYELEL 435

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
              D  + W  + + P  +  G ++ Y G+  DI+E+K++ E +   A  D LT +PNR 
Sbjct: 436 ICKDGTWLWTEVNVVPHRDGVGKLVGYHGVTRDISERKRTAERMEHLARHDPLTDLPNRA 495

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F DRL   L LS  +   R  +M +D+D++K +ND  G AVGD +L     R+   ++ 
Sbjct: 496 LFFDRLDVALALSKRN-GTRLALMFVDLDRFKPVNDTFGHAVGDVLLREAAGRMRACIRG 554

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
            D + R+ G+ F ++L +          A  +R+++A P  +  R I ++ SIG A    
Sbjct: 555 SDTVGRIGGDEFVVLLPAVETQKAPLVVAEKLRRALARPFEIDGRRIGISCSIGIAIAPD 614

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 E+ KNA++AMY AK +GG+ V  F   +   
Sbjct: 615 DGCDPIELAKNADMAMYLAKQQGGDAVRFFGSQAEAP 651


>gi|225849816|ref|YP_002730050.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
 gi|225646581|gb|ACO04767.1| diguanylate cyclase/phosphodiesterase [Persephonella marina EX-H1]
          Length = 460

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 186/446 (41%), Gaps = 21/446 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E K            D LT + NR  F  +    L   ++ +     V+ +D+D +K 
Sbjct: 25  INEYKAKDSQSEEKLLTDYLTSLLNRDGF-KKTLLELSKLSSLEEKSIAVITLDLDNFKI 83

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           IN   G  +GD  L  + + +  + +    +AR+ G+ FGI +     +  + +      
Sbjct: 84  INTSYGYEIGDLFLKEIGKLLKSISRSNWTVARIGGDEFGIAIYGIKFNEILFEVERIKS 143

Query: 639 KSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
           +       + +  ++ T S+G + +   S      +L  AE++ Y +K +G  ++ +F  
Sbjct: 144 RIENFRFKVGDSYLSTTVSVGVSIYSPDSDTDILSVLNKAEVSTYQSKTKGK-NIATFSS 202

Query: 698 SSFRSDRVMIKED----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +     ++E     +        + +   PI+ L   EI+G E L++ ++ +   I 
Sbjct: 203 EDIQEKLKDLEEKKNIIVHAINNKDAIKVYVQPIVSLKKNEIIGGELLLRIEY-RGKIIP 261

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN--IASKDLLDNELC 811
           + +F+  +    ++  +    L++        + +      +I IN  I +  L +    
Sbjct: 262 AVDFIESSIFFGLLPKLEKIQLDKFLTSGSIKKLRGR----YIFINRHIKAGQLKN---I 314

Query: 812 EGMQALISKTL--YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           + +   +S      S     +  +E+  + N    + ++   +K  I   +DDFG   + 
Sbjct: 315 KSLIDELSYHKKEISGINFVIEITENSFVENFSYLKDIVHYAKKRDILFAVDDFGAGFAS 374

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             Y+  +P D +K +GS++    S +K  AI+++I  +++ ++   +A+ I     +K+ 
Sbjct: 375 FGYVSKVPIDIIKIDGSIINECISDKKHQAIVKAISILSRELDMKTVAEFIDSIDKLKKC 434

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLL 953
           T    DY Q  +   PL     LKLL
Sbjct: 435 TVFDIDYGQGFYFNRPLELEDFLKLL 460


>gi|16331729|ref|NP_442457.1| hypothetical protein slr0842 [Synechocystis sp. PCC 6803]
 gi|1001281|dbj|BAA10527.1| slr0842 [Synechocystis sp. PCC 6803]
          Length = 404

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 130/277 (46%), Gaps = 10/277 (3%)

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVG 737
           + A+   K      +      +   D + ++ ++  A+   + +LVY PI+ + D  I G
Sbjct: 130 DAALTKTKLSLKERI------TDAVDMIRLEGEMKEAIAKEQFHLVYQPIVFMDDLRIEG 183

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
            EALI+W  PK G +    F+ +AE   +I  I  +++E+  +D+ +++ +   P + + 
Sbjct: 184 FEALIRWQSPKRGFVRPDRFIEVAEATDLIIPIGQWVIEQGLKDLKTFQTKF-NPHLLMS 242

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
            NI  +     +    +   +     +P ++KL   E  +    E S   +   R  G +
Sbjct: 243 FNIVGRQTNSEDFVPWLLEKVDHYGLTPDKVKLEIIERTLFS-GESSAPWIENCRSQGFA 301

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           L LDDFGT  S L YL     D VK + S + G    +   +I  +I+ ++  +  T++A
Sbjct: 302 LVLDDFGTGYSSLQYLNEYKIDRVKIDKSFVDGLGTNQNSESICSAILQLSHALGMTVVA 361

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + I  +  ++ L  +GCDY Q    + PL F+ ++ L
Sbjct: 362 EGIETQAQLEILQSLGCDYGQGYLFSRPLRFDQVMVL 398


>gi|149911115|ref|ZP_01899741.1| sensory box protein [Moritella sp. PE36]
 gi|149805792|gb|EDM65782.1| sensory box protein [Moritella sp. PE36]
          Length = 811

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 184/399 (46%), Gaps = 12/399 (3%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           IQ+ + T         + +R S+       S + +   D     +   P   TI G ++ 
Sbjct: 419 IQYFMNTIQDLTEEQDNRQRLSIIESVYRHSAEGIMLCDANEKIIDVNPAFETITGYSAE 478

Query: 444 SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
              G   + L   +H  D   +  I ++ + +     +     R    +     + +  +
Sbjct: 479 DAIGRTHDLLRSGVH--DEQFYHDIAEALLKHN--EWKGVIWSRNRAGEIFAQQVTLSSI 534

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +  +  +  + +D+TE KK+ + I+  +  D LTG+PNRQ F   +  I+D SA  D
Sbjct: 535 KEGD-KLKYFFAVFSDVTEDKKTEQQIITQSNFDALTGLPNRQYFSAEMRHIIDKSAKHD 593

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
             +  ++ ID+D +K IN+      GD +L   T R+    +  D LAR+ G+ F  I+ 
Sbjct: 594 Q-KFAIIYIDLDDFKSINNSEDFMAGDRLLKETTERLKYRSRDSDFLARIDGDEFAFIIP 652

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N  +   +A  ++   A    L  ++  +TAS+G   +    ++   ++++AE A++
Sbjct: 653 DVVNKRQAEVYAKQLQGVFAQAYQLSNQQRYITASVGITMYPEDGVSVEALMQSAEQAIF 712

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
            AK +G N   +F      +  +  +   +L  A++   L + Y PI+  +  EI  LEA
Sbjct: 713 EAKRKGRNQCVTFTQELSDAAILKHQTVVELAEAIKRGNLDVYYQPIVDNVTGEIDKLEA 772

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           L++W HP  G IS +EF+ +AEE  +I+++  ++L++  
Sbjct: 773 LVRWQHPDRGFISPAEFIPLAEEGGLIQSLGEYVLDQAC 811



 Score = 71.9 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 44/149 (29%), Gaps = 7/149 (4%)

Query: 387 IQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           I   +     ++   S  ER     +  +   +   +  R+          + G      
Sbjct: 290 ISKDITAEELTKKRASAQERILETVLATTPVGLIKLNANREIKWVNKQACKMFGYELDDF 349

Query: 446 HGPIRNWL---PYIH---INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           H            +H     D++ F          +R       R R  D    W  + +
Sbjct: 350 HRLREQGTLNTSSLHLYFDEDKEQFEEYYQEIYANKRNNFTLNTRYRHRDGSILWTKLTV 409

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEG 528
             + +   +I  ++    D+TE++ + + 
Sbjct: 410 TAVRDDAHNIQYFMNTIQDLTEEQDNRQR 438



 Score = 42.2 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 1/115 (0%)

Query: 419 WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV-GYRRG 477
           W + I +DR+  +   A I+   +          L  +   D+        S +      
Sbjct: 193 WSYFIEQDRLEYSDSAANIIETDNVKAINQFDALLALVDKFDKPGVLRDFQSAMTSNSTT 252

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            ++  F +         +   I P+++  G + R   I+ DIT ++ + +     
Sbjct: 253 SIRSIFNITTLKGNSKRIQSDIYPIADERGKVYRLDCISKDITAEELTKKRASAQ 307


>gi|92112451|ref|YP_572379.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
 gi|91795541|gb|ABE57680.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Chromohalobacter salexigens DSM 3043]
          Length = 601

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/472 (20%), Positives = 203/472 (43%), Gaps = 34/472 (7%)

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ-----------------DNLTGI 541
             P+ +S G  +  + +  D   +K S +                         D++T +
Sbjct: 122 GAPLFDSEGAAIGGVCVI-DYEPRKLSDKEAEMLRAFSVIASNLLESSNNVGFVDSVTFL 180

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---DKYKKINDVLGIAVGDDVLVSLTRR 598
           PN+Q  +  L  +      D  L  TV+V+++     Y ++    G+   ++V  ++   
Sbjct: 181 PNQQRLMRDLDALHARQDEDHVLPKTVIVLEVVSTSGYHELAKSYGVEAVEEVSKNIADL 240

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER---EITVT 655
           +   L    +L  +S +RF +++        I      +  ++   I         + + 
Sbjct: 241 LRVCLSERHLLYAVSLSRFSVLVPQSERGAVI-----DIVAALNFRIGAGGNTALPVNLQ 295

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
              G+  +    I   +  + A  A+Y A  +R           + +  +V +   L  A
Sbjct: 296 VCAGYYDFDPLAIAPRDTFRRALSALYEALAYREPVMAYQVNFDNAQQRKVKLINSLPEA 355

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           +E+ +LYL+  P I +   E+VGLEAL++W HP++G +S  EF+ +  +  M+  +  ++
Sbjct: 356 LEDRQLYLMVQPKINMRSGEVVGLEALLRWRHPEFGELSPMEFVPLVAQTYMVNDLTHWV 415

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           +      I  + ++     + I +N+ + +L D+     +++++ +    P  +++   E
Sbjct: 416 VREALGIISRFHEKGCY--LTISVNVTTTNLFDDSFFNCVESMLGEFGVDPKYLEIECLE 473

Query: 835 SVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--T 892
           +  +    R   +L  LR IG+ + LDDFG+  S L+YL  IP D VK + S++      
Sbjct: 474 TEELLEDYRIASVLQALRDIGVRIALDDFGSGYSNLNYLRRIPVDVVKIDRSIIKDMEVD 533

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
               AI+  ++ + K+ +  I+A+ I  +    +L + GC   Q  +   P+
Sbjct: 534 AGSRAIVFRLVQILKHFDYGIVAEGIENQATADQLLQFGCVVGQGYYFYRPM 585


>gi|168210701|ref|ZP_02636326.1| putative diguanylate cyclase [Clostridium perfringens B str. ATCC
           3626]
 gi|170711175|gb|EDT23357.1| putative diguanylate cyclase [Clostridium perfringens B str. ATCC
           3626]
          Length = 507

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 97/426 (22%), Positives = 177/426 (41%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R  F + L               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFEFKNNLEMW--------KGEYTLFLIDLRKFSLINDALGRDKGDEVLREF 138

Query: 596 TRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              +  +   L   ++     G  F + + S  N   I +    +     + +N L +EI
Sbjct: 139 GNGLNNISKSLASKNLYGVYGGEEFLVAINS-KNKEDIIEVLNKLDNLKKIRLNSLNKEI 197

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +  +IG++       +  E+++    A   AK     +V  +        +    I  D
Sbjct: 198 KMEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEDFIYVIEYTEELRSIRKKNNLITRD 256

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+ N +LY VY P I  +D++I G E LI+W+H   G+IS+S+ +   EE+  IK +
Sbjct: 257 IKDALINKKLYTVYQPQISSLDDKIKGYEILIRWNHETLGSISASDIVKTLEEIDAIKDL 316

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L++ E             N   +   +NI+   L    +   +  +       P  I L
Sbjct: 317 DLYVFESTCEFQSRLIQ--NNIELQCSVNISVNTLKHRGVGSNLYKISKNYNLKPENITL 374

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++ 
Sbjct: 375 EILENSDLEVSGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISD 434

Query: 891 S-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     
Sbjct: 435 IPNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEF 494

Query: 950 LKLLKE 955
           L+ +  
Sbjct: 495 LEYVNN 500


>gi|215487795|ref|YP_002330226.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265867|emb|CAS10276.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 747

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNTP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V++   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVVMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I++++LE   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVLEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDF T 
Sbjct: 592 QARFPVEVSQLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFDTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|307720005|ref|YP_003891145.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978098|gb|ADN08133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM
           16294]
          Length = 564

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 170/431 (39%), Gaps = 39/431 (9%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           K+     L   + D    +PN     D L                ++++DI  +  +N  
Sbjct: 156 KELEHKCLHEYYTD----LPNEIMLRDDLMA---------QEYAYMLLLDISHFSVLNKE 202

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G      +++   R + + +     L ++  +RF  IL+      K+ ++   +     
Sbjct: 203 YGKDFATHIIIRTARILEKHIHNDAKLYKVESDRFA-ILVKSTEVKKVNEYCDQIVSFFD 261

Query: 643 MP-INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS-- 699
           M  + + + E+ VT +IG     +     SE L N E A+  +K  G  H E +  +   
Sbjct: 262 MKNVKVDDTELNVTFNIGVDKVRAD---VSETLINCEYALDKSKELGSRHYEIYSENHAV 318

Query: 700 -----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                     + +  +L   +   ++   + PI+     EI   EAL +  H     I+ 
Sbjct: 319 FVDEKDAIKWLRLTREL---IVEEKIVPHFQPIMNTKTGEIYKYEALARGFH-NNEIIAP 374

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AE+L +  AI   M+ +                +   IN+  +DLL+  L + +
Sbjct: 375 YYFIASAEKLGLSTAITRLMINKSFAF-------FEDKTVQFSINLTERDLLEGYLIKFL 427

Query: 815 QALISKTLYSPSRIKLSFSES-VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              + +   +P+R+     E+  V  + +R    L +LR +G  + +DDFG + S  S L
Sbjct: 428 NEKLKQYNITPNRVTFEILENITVAKSSQRITKKLNKLRGMGFKIAVDDFGIENSNFSRL 487

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             I  D +K +G  +       +   I ++I+ +AK +    +A+ +  E   + +   G
Sbjct: 488 LEIQLDFIKIDGLFIKDLKTNPRNRTITKAIVNLAKTLGIKTVAEYVEDEEIYELIKGCG 547

Query: 932 CDYIQDSHVAS 942
            DY Q  H+  
Sbjct: 548 IDYAQGYHIGK 558


>gi|83745605|ref|ZP_00942663.1| Sensor protein FixL [Ralstonia solanacearum UW551]
 gi|83727682|gb|EAP74802.1| Sensor protein FixL [Ralstonia solanacearum UW551]
          Length = 470

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 182/440 (41%), Gaps = 30/440 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D ++G+P+R+ F  +L   +  S         +++I  D + +    LG     +V+V  
Sbjct: 13  DPVSGLPDRERF-AQLLAGMPQSGPLGGGVGALLLIGFDHFAEAAASLGPLAARNVMVEC 71

Query: 596 TRRIGELLKFPD-----ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
             R+  L          ++ R+    F +   +  ++  + D A  +  S+  P      
Sbjct: 72  ASRLQALCPQAAGDAAPVVGRIGPETFAVASAAFASAQAVHDLARRISASLTRPFITAGY 131

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV------------- 697
           E+  + SIG   +      ++ +++ A+ A++H +H G      +               
Sbjct: 132 ELVCSCSIGMTMFDGPPADTARLIEQADRALFHVQHGGEQSPAMYAPAAPTPGAEGVAAD 191

Query: 698 ---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              +   S+   +   L  A+   +  L   P + L++ +IVG E L++W  P+ G ++ 
Sbjct: 192 TGANDPVSEHPRLAAQLRHALTRRQFSLNLQPQLSLVNGQIVGYEFLLRWISPELGGVAP 251

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQ-------ANMPPIFILINIASKDLLD 807
           ++F+ I E+   I+ +  ++L+  A+ +   + +       A  P +   +N++   LLD
Sbjct: 252 ADFLPILEQTGGIREVGHWVLDNAAQMLAGLQQEEAERAGTARQPDLLAAVNLSDAQLLD 311

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +L + ++ + ++     +R+    SE  ++   E +R  +  L   G  + ++DFG   
Sbjct: 312 PQLSDTVRDIAARHAVPTTRLVFEVSEHTLLRAGEAARQAVDALHGCGARVAVEDFGATA 371

Query: 868 SLLSYLGYIPFDTVKFNGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
             L  L     D VK +  +++  +     + LR ++  A +    + A  +     ++ 
Sbjct: 372 HSLDCLAQFRPDLVKLDRCVVSAVTDAGDDSALRHLVAAAHDAGVPVTATRVETAAQLQA 431

Query: 927 LTRMGCDYIQDSHVASPLGF 946
           L    CD IQ   ++ P   
Sbjct: 432 LRACRCDVIQGYLLSQPFPA 451


>gi|320155934|ref|YP_004188313.1| hypothetical protein VVM_02129 [Vibrio vulnificus MO6-24/O]
 gi|319931246|gb|ADV86110.1| hypothetical protein VVMO6_01088 [Vibrio vulnificus MO6-24/O]
          Length = 820

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/560 (16%), Positives = 201/560 (35%), Gaps = 33/560 (5%)

Query: 396 FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY 455
             +      E            +   D     +        + G     + G        
Sbjct: 120 LLRDADEVAELFYRLFENDHHGILVTDEETRILACNAYFERLTGYHRRDLIG----LKSR 175

Query: 456 IHINDR--DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
           I   D+  ++F   +   +    G        R +  +     + I+ ++ +  D   +I
Sbjct: 176 IFNADKHSEHFYQSMWHALATE-GSWSGAILTRTSGGENTPQDLTIQKVTLAGRD--YFI 232

Query: 514 GIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           G + D+ T   +  +        D LT +P+++ FL  L          ++ + T++++ 
Sbjct: 233 GFSADLSTHLNRLNDREKGG--IDLLTQLPSKEKFLRLLEVW----HQSESDKSTLLLL- 285

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-KIA 631
                 I      +   +      + + E      ++  L  +RF + L  E++S   + 
Sbjct: 286 -----AIQPNFSYSTELNAKREFAQFLFEHSHNH-LVGYLGNDRFVVGLEIEHHSHISLI 339

Query: 632 DFAIAMRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKH-- 686
                  K         + E++        G +       T + +  +A  A+       
Sbjct: 340 RQVRQRMKRFFHGFKQAKGEVSQALTQGKTGVSVLGVDAKTPAALFTHANQALLEMHSGL 399

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           +         +      +  ++  L   +E   + + Y PII L    +   EAL ++  
Sbjct: 400 QRHISFYDHAMHLQIEKKKRLETLLLECIEQKTIEVHYQPIIDLQQWRVDKFEALCRFPP 459

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA-SKDL 805
                 S  E + IAE+L MI+ ++  +  +   D+   +     P + I  N + S   
Sbjct: 460 ALSQEASVQELINIAEDLDMIEILDQQVARQALSDLEYLQCCFG-PQVGISFNRSISSST 518

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
             ++L      LI ++   P ++ +  +E+    + E     L  LRK G+S+ +DDFGT
Sbjct: 519 GVSQLLMQTALLIDESGVQPDQVTVEITENAYFESEEHKADGLKLLRKAGVSVAVDDFGT 578

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S   YL    FD +K + + +        +  I+RS+  ++  +   ++A+ +  E +
Sbjct: 579 GYSSFQYLTQCHFDVLKIDRAFVQNIRVNSNQYRIVRSLTELSHQLGLRVVAEGVESETE 638

Query: 924 IKELTRMGCDYIQDSHVASP 943
           ++ L ++G D +Q    A P
Sbjct: 639 LQILAQIGVDSVQGYFFAKP 658


>gi|218674921|ref|ZP_03524590.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 477

 Score =  272 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/332 (24%), Positives = 167/332 (50%), Gaps = 8/332 (2%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
              +   A+ D LTG+ NR    +++   +      D    T+ + ++D +K IND+ G 
Sbjct: 3   HNELQAMAYTDPLTGLGNRNRMREKVLQ-ISAERASDPAPFTIGIANLDSFKPINDLFGS 61

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           + GD++L  +  R+   +    ++ R  G+ F  +L           F   +R+ ++ P 
Sbjct: 62  SAGDEILCQVAHRLKACIPDGALVTRHDGDEFAFVLPLIFERASAEKFGQMIREVLSAPY 121

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
           +L +R + ++AS GFA +  +     E+LK+AE A+Y +K RG   +  +     +  + 
Sbjct: 122 DLGDRNVRLSASFGFAIYPFAGEDCEELLKSAETALYRSKRRGRGQITVYSREIAQEMKR 181

Query: 706 --MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
              +++ L  A+ +  + + + PI+ L + ++VG EAL +W+ P  G +S   F+ +AEE
Sbjct: 182 ATQLEQALRNAIISDAIDVHFQPIVSLSNNQVVGFEALARWNDPDLGFVSPGVFVPLAEE 241

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
              I A++  +L + A   +SW  +     +F+  N++S  L+D      + +++ +  +
Sbjct: 242 RGFIDALSETLLRKAAEAALSWPRE-----LFLSFNLSSAQLMDPGTSGSILSILGRVGF 296

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
            P R++L  +E+ VMG+ + +  ++  LR  G
Sbjct: 297 DPHRLELEITETAVMGSADTAHRIIADLRAAG 328


>gi|296104070|ref|YP_003614216.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058529|gb|ADF63267.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 717

 Score =  272 bits (697), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 159/431 (36%), Gaps = 19/431 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              +     A  D LTG+PN ++  + L                +  + +D  + ++   
Sbjct: 303 WLKQDWQDRALTDPLTGLPNIRALEEFLQA---------QPDAKICCLRMDNLEFLSRHY 353

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI +       +T  +  LL+  + L +L G+   I+L+    + ++      +     +
Sbjct: 354 GILMRVHCKRRVTTSLQPLLQKDEKLFQLPGSELVIVLLGPETAERLQHMVDQLNSR-KI 412

Query: 644 PINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
             N    +I   AS G      +   T  ++   AE +   A +           S   +
Sbjct: 413 YWNNTGLDIEFGASWGMVENGENLHHTLGQLSWLAEQSCG-AHNVLALTNSLEAASGQTT 471

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +RV++   +  A++  + +L   PI +       G   ++     +   I+   F+ +  
Sbjct: 472 ERVLMLARIKHALDAGQFHLYAQPIQKADG---SGYYEILARMESEGEIITPDRFIPLIA 528

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  +    ++ +LE++   +               +N+    L+  E+   + AL     
Sbjct: 529 QFNLSHRFDMCVLEKLLLWLRDHPPSQGGT--RFSVNLMPLTLMQKEVATEISALFEHYG 586

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
            +P  + L  +E     N   S   L +LR  G  + +DDFGT  +    L  +  D +K
Sbjct: 587 IAPQDVVLEITEEQAFSNSGSSIKNLQQLRDRGFRIAIDDFGTGYANYERLRRLQADIIK 646

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +G  +           I++SI  +AK     ++A+ +        L R G DY+Q   +
Sbjct: 647 IDGCFVKDICTDDMDAMIVQSICNLAKTKSLCVVAEYVETPAQRDMLLRFGVDYLQGYLI 706

Query: 941 ASPLGFNSILK 951
             P   +++  
Sbjct: 707 GKPTPLDALQA 717


>gi|126666936|ref|ZP_01737912.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
 gi|126628652|gb|EAZ99273.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Marinobacter sp. ELB17]
          Length = 694

 Score =  272 bits (697), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/588 (14%), Positives = 204/588 (34%), Gaps = 16/588 (2%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
             P     L+++V+      +            +    +R    +  S D +  + I   
Sbjct: 107 TVPYTEQALLVLVVNRELMDLDERRRRRLLESHLREAEQRCQRLLESSKDAI-AYVIEGM 165

Query: 427 RVTTTPDIATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            V         LG      +       L  +    +D++R ++  F      R+  +   
Sbjct: 166 HVYANESYLEFLGYDDIDQLMCIP--VLDTLGSQSQDDYRQLIKGFADQSNERVSLKVTA 223

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R +D+      ++    +       + +         ++  E +   + QD LTG+ NR 
Sbjct: 224 RRSDSHELTANMQASAATFDGERCTQIV--LRPEHNGEELEEKLRQISNQDLLTGLYNRP 281

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            F+  L   +  +        ++  I +D +  +   +GI   D +L  L   + E +  
Sbjct: 282 FFMASLAEAITQAGASSE-SGSLAYISLDNFAPLKRDVGITGVDFLLRDLATLLREQVGA 340

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
              LARL  + F ++ +  + +  ++              ++    + +T SIG A+ T 
Sbjct: 341 DMTLARLGDDSFALLYLPYSENDMVSLAQKICTAIEGSLFDVDGHSVQLTVSIGVAAVTE 400

Query: 666 SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI-----KEDLCLAVENSEL 720
               + E++  A  A    K +      +   +   ++  ++      + +  A++N + 
Sbjct: 401 KAPKAEELMARAHRASAELKKQNEQTHGNGVRAHNAAEHRILNDSTAIDGIHRALDNDQF 460

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L++ P+I L  E     E  ++    K   +S  +F+           ++ ++  +  +
Sbjct: 461 RLLFQPVINLRGENEEHYEVYVRMLDDKGEEVSPYDFLPPLGPTDTAMKVDRWVFLQAIK 520

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            + + R +     +F+  N+ ++ L D      +   +         +     E      
Sbjct: 521 KLAARRVKGQNTRLFL--NVTAETLHDKTFTPWLSVALKAARLPGDTLIFQLRECDANNF 578

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAI 898
            ++++     L ++   +++  FG   +    L +I  D VK +GS              
Sbjct: 579 TKQAKDFAKTLHQLHCKVSITQFGCALNPFHALNHIDTDYVKIDGSFTEELQNDHNAREH 638

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           L+ ++   ++     I   +     +  L + G +YIQ  ++  P   
Sbjct: 639 LKEMVQSLQSAGKLSIVPLVESAGILATLWQAGVNYIQGYYLQPPTPE 686


>gi|330912274|gb|EGH40784.1| putative cytochrome C-type biogenesis protein [Escherichia coli
           AA86]
          Length = 747

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 189/459 (41%), Gaps = 23/459 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN ++    L                +
Sbjct: 308 IVNYMAVLA--TRQRAVVRRIQRLAYVDPVVHLPNVRALNRALRDA---------PWSAL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + I   + +    GI +       L+  +  LL+  + + +LSGN   + L +E++  
Sbjct: 357 CYLHIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           +I      +++      + +  +  +  S  +     + I     E+   AEL++     
Sbjct: 417 RITALDSHLKQ-FRFFWDGMPMQPQIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNVP 475

Query: 687 RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
                  +  +     D+V +   L  A+E++  +L+  PI  +  +  V  E L++   
Sbjct: 476 ENMQRRGAMYLQRELKDKVAMMNRLQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKG 533

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
                IS   F+ +A E  +  +I+++++E   + +   R +         IN++   + 
Sbjct: 534 ENDELISPDSFLPVAHEFGLSSSIDMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVC 591

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
                  +  L++K      ++    +ES  + N +++++ L  L+++G  + +DDFGT 
Sbjct: 592 LARFPVEVSQLLAKYQTEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTG 651

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
            +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E   
Sbjct: 652 YASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIR 711

Query: 925 KELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           + +  +G DY+Q   +  P     ++  L E  P+ ++ 
Sbjct: 712 EAVLSLGIDYMQGYLIGKPQP---LIDTLNEIEPIRESA 747


>gi|325829759|ref|ZP_08163217.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Eggerthella sp. HGA1]
 gi|325487926|gb|EGC90363.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Eggerthella sp. HGA1]
          Length = 981

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 170/457 (37%), Gaps = 34/457 (7%)

Query: 512 YIGIANDITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            +G+A  ++  K ++   +   +F D LT   +   F   +   +  +    +    ++ 
Sbjct: 521 VLGVALYVSHVKLRAARRVEDFSFTDPLTEGWSLARFRSEVGAQMANAR---DGAYAIVY 577

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           +D+  +K  N   G A GD VL+ L   +  +    +  A +  + F +++        +
Sbjct: 578 LDVKSFKGFNAAFGYATGDRVLLDLNGTLAGMKAADERYAHVIADEFVLLVRW-RGWDAL 636

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS-------EMLKNAELAMYH 683
            +    + +       L E    +    G      S  T         E +  A  A   
Sbjct: 637 LEHFDELDRRFNSTETLTELSHRLMLQAGVCIIERSAETPRIDVQTIIEFVDAARYARDS 696

Query: 684 AKHRGGNHVESFR--VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
                 +    +   +         +      A+E  E    Y P + +    +VG EAL
Sbjct: 697 IGEASRSTAALYSASMKDRDIAERALVAAAHDALERGEFTAYYQPKVEIATNRLVGFEAL 756

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+ P+ G +   EF+ + E   ++  ++L +   +   I    D     P+ I  N +
Sbjct: 757 VRWESPERGLVPPDEFIPLFERTGLVVDLDLQVFRLVCARIREQLDA-GEHPLVIACNFS 815

Query: 802 SKDLLDNELCEGMQALISKTLYS--------PSRIKLSFSESVVMGNPERSRLLLGRLRK 853
              + ++   E +++++                 I         M + ER+  L  RL+ 
Sbjct: 816 RLHMRNDAFPETVKSIVDGFGVPIELLELELTENIV--------MEDLERAERLCRRLKD 867

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIET 911
           +G  + +DDFG+  S L  L  +P D +K + S +  + S E+  AIL  ++ +A  +  
Sbjct: 868 LGFRIAIDDFGSGYSSLGTLQNLPIDVLKLDRSFLMSSESGERCKAILDGVVSIADKLAV 927

Query: 912 TIIAKDIYGEIDIKELTRMGCDYI-QDSHVASPLGFN 947
            ++ + +        L RM    I Q    + P+  +
Sbjct: 928 NVVVEGVETRDQASMLVRMDDRIIAQGFLYSRPVPRD 964


>gi|291612758|ref|YP_003522915.1| diguanylate phosphodiesterase [Sideroxydans lithotrophicus ES-1]
 gi|291582870|gb|ADE10528.1| diguanylate phosphodiesterase [Sideroxydans lithotrophicus ES-1]
          Length = 381

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 2/251 (0%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + ++ +  D+  A+   +  + Y PI  L    + G EALI+W HP  G +S  +F+ +
Sbjct: 131 ATQQLRLAHDIAEALREEQFEMFYQPICDLSSGRLAGFEALIRWHHPVEGMVSPMDFLWV 190

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+   I+ I L+ L+R   D    R + N    F+ +N++   L  +     ++ ++S 
Sbjct: 191 AEQTGQIREIGLWTLQRACLDWPVLRTRINHHKPFVSVNLSPSQLTGDGFVGEVKTIVSD 250

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  +KL  +E+V++ NP+ +  LL +L + G +L LDDFGT  S L  L   P  T
Sbjct: 251 LQMPPRELKLELTETVIINNPDLALQLLSKLIEAGSTLALDDFGTGHSGLDALHRYPIGT 310

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + + ++    +     I+++ I +A +++  ++A+ I  E +   L  +GCDY Q  
Sbjct: 311 MKIDRAFVSQMLTSPHSAKIVQASIELAHSLKMDVVAEGIESEDERLALLELGCDYGQGW 370

Query: 939 HVASPLGFNSI 949
               P    +I
Sbjct: 371 LFGKPASLKNI 381


>gi|254457104|ref|ZP_05070532.1| ggdef family protein [Campylobacterales bacterium GD 1]
 gi|207085896|gb|EDZ63180.1| ggdef family protein [Campylobacterales bacterium GD 1]
          Length = 629

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 170/426 (39%), Gaps = 32/426 (7%)

Query: 538 LTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR 597
           L+G+PNR   L+   + +            + +++IDK++K NDV G  VG+  L     
Sbjct: 224 LSGLPNRNKLLE--DSYIYKFKQ-------MALLNIDKFQKFNDVYGEEVGNIALKLTAD 274

Query: 598 RIGELLKFPDIL-ARLSGNRFGIILISEN---NSLKIADFAIAMRKSIAMPINLLEREIT 653
            +   +   + L   + G+ F   +       N+  I      +++         ++  T
Sbjct: 275 FLTLHVDDNNTLLYHIGGDEFVFAVKDSTKLNNTHFIEKVEDILKQYRRENFIYEDKRFT 334

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV---SSFRSDRVMIKED 710
              S G A        S +ML  A++A+  AK R                  + +   + 
Sbjct: 335 FMMSAGLAF-----SGSRKMLAYADMALKDAKKRNVQISIFNDDKALEKLHKEDIECHKK 389

Query: 711 LCLAVENSELYLVYHPIIRLMDEEI-VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           L  A++ + +   + PI  + D  + +  E+L++        I+   F+ +A++  +   
Sbjct: 390 LIHAIDTNNIISFFQPIAPIQDASLDIKYESLVRIREDDGNIIAPFRFIDVAKQNRVYHK 449

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++      I  +        I   INI+ +D+ +++  + + A   +  Y+   + 
Sbjct: 450 LTQAIINNTFEVISKY-------DIPCSINISMEDIENDKTIQMLYAKFDEFEYN-HHLS 501

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +   E+    + +R      ++R  GI + LDDFG   S  S+   +P D +K + SL++
Sbjct: 502 IELLETEEFKDYKRVYDFCLKVRSYGIKVALDDFGAGYSNFSHALNLPIDYIKIDASLIS 561

Query: 890 GSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     ++ +I+ +A  +    IA+ +  +  +  + R+  DY Q  ++  P    
Sbjct: 562 NIDRDMNSQIMVETIVGLAHKLNIQTIAEFVSSKEILDVVKRLNIDYAQGYYIGKPEEIE 621

Query: 948 SILKLL 953
             +  L
Sbjct: 622 KHIPYL 627


>gi|163758431|ref|ZP_02165519.1| GGDEF family protein [Hoeflea phototrophica DFL-43]
 gi|162284720|gb|EDQ35003.1| GGDEF family protein [Hoeflea phototrophica DFL-43]
          Length = 274

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            +++ L  A+   E+ + + PI+ L+D  I G EAL +W   + G +S + F+ +AEE  
Sbjct: 6   QVEQALRRAIIADEVAVHFQPIVDLIDGSIQGFEALARWTDRELGFVSPAVFIPLAEERG 65

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I ++   +L++ A     W        +F+  N++S  L+D      M A+I++    P
Sbjct: 66  FIDSLTETLLKKAAETAKHWPS-----DMFLSFNLSSAQLIDPATGFNMLAIINRVGLDP 120

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
            R++L  +E+ +M +PE +  ++  L  IGI ++LDDFGT  S L  L    F+ +K + 
Sbjct: 121 RRLELEITETAMMSDPEIAAKVIDELHTIGIRVSLDDFGTGQSSLGRLREFAFNKLKIDR 180

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S ++     +    I+R+I+ M + +   +IA+ I  E   + L  +GC   Q  H    
Sbjct: 181 SFISEITVDKSSEHIVRAILMMCEGLNLKVIAEGIETEEQAEMLRSLGCRSGQGWHYGKA 240

Query: 944 LGFNSILKLLKERF 957
           +      +L++ + 
Sbjct: 241 VDSAETFRLIEAQQ 254


>gi|152971359|ref|YP_001336468.1| putative cytochrome C-type biogenesis protein [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956208|gb|ABR78238.1| putative cytochrome C-type biogenesis protein [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 742

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 172/438 (39%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+     +   AF D +  +PN ++    L         +     T+  + I + + +
Sbjct: 317 TQQRLIYARVRQMAFLDPVVHMPNLRALSRAL---------NGTSWSTLCFLRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   +  LL+  + +  L+G+     L SE +  +I     ++R+
Sbjct: 368 GRHYGVLLRIQYKQMLANHLRTLLQPNEAVYHLAGHDLVFRLNSEGHQARIHLIDRSLRQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                 +     +   +  S          +     E+   A++++            + 
Sbjct: 428 F---RFHWDGVPLQPRIGMSYCNVRSPVKHLYLLLGELNTIADMSLASGHPENLQRRGAG 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V     D+V++   +  A+E+    L+  PI  +  +     E L++           +
Sbjct: 485 HVQQDLKDKVVMMNRILKALEHDHFVLMAQPIQGIRGDR--YHEVLVRMKGESGELTGPN 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +A E  +   ++ +++E     + + R       + + IN++   L  ++  + ++
Sbjct: 543 EFLPVAHEFGLSTRVDQWVIEHTLAFMDANRRALPG--LRLAINLSPVSLSRSQFPQEVE 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+      P +I    +E+  + NPE     L  LR +G  + +DDFGT  +  + L  
Sbjct: 601 ALLQAYNIEPWQIIFELTENYALSNPELVCQTLEHLRALGCRVAIDDFGTGYASYARLKT 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +     +     ++ SI  +A+     ++A+ +      + +  +G D
Sbjct: 661 MNVDILKIDGSFIRNLLASSLDYQVVDSICRLARMKNMQVVAEYVESPEIRQAVITLGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P+    + +
Sbjct: 721 YMQGYDIGVPVPLTQLAE 738


>gi|283786478|ref|YP_003366343.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282949932|emb|CBG89557.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 735

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 152/429 (35%), Gaps = 22/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              +     A  D LT +PN ++    L               +V  + +D  + ++   
Sbjct: 317 WLNQRWHQQALTDPLTRLPNLRALEHFLQKE---------SGQSVCSLRLDNLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +      ++ R +  LL   + + +L G+   ++L       ++      +    + 
Sbjct: 368 GMLMRVHCKRTVYRMLQPLLLEGEKIFQLPGSELLLVLRGPETEARLQHMLDLLN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH---VESFRVSSF 700
            I      + +     +  W   + T   +L         +                +  
Sbjct: 425 KIYWNNTGLDMGYGASWGGWDGKQETLQPLLGQLSWLAEQSCTHHRVMALTNSLEAATGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++RV++   +  A++  +L L   PI     +   G + ++       G ++   F+ +
Sbjct: 485 TTERVLLLNKIRKALDGGDLLLYAQPIRDSQGK---GYDEILARLKCDDGIMTPDRFIPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L ++E +   + +       P     +N+    LL  E    +  L ++
Sbjct: 542 IAQFNLSARFDLQVVEALLTWLAAHPSAEPGP--RFSVNLMPLTLLQKETAPRIIRLFNR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +P  + +  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YGIAPETVIIEITEEQAFSNSEASVQNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I++SI  +AK    +++A+ +        L  MG +Y+Q  
Sbjct: 660 IKIDGVFVKDILNDSLDAMIVKSITELAKTKSLSVVAEYVETPEQRDLLLSMGVNYLQGY 719

Query: 939 HVASPLGFN 947
            +  P    
Sbjct: 720 LIGRPQPLE 728


>gi|168334810|ref|ZP_02692935.1| putative signaling protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 546

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 668 ITSSEMLKNAELAMY----HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
               + ++  E A++     A        E  +++    +   +      +++N E  + 
Sbjct: 242 KDIDDSVRRRERALFLTKAIANLEYLLKDEEIKLTLEEKNSKNLINHFHSSLQNEEFEVY 301

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y P        I G EAL++W+  K   IS  EF+   E+   I  ++ ++  +    I 
Sbjct: 302 YQPKYDPTKRLINGAEALVRWNFKKKQLISPIEFIPEFEKNGYIIELDKYVWRKACEYIN 361

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
                 +   I + +N++ + L D E    +  L+ +    P R+ L F+E+    + + 
Sbjct: 362 K-----HNLDILVSVNVSMRHLEDPEFKAYITKLVKEYDIDPGRLCLEFTETAHHEDIKY 416

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRS 901
               L  L+  G+ L+LDDFG   S L+ L  IP   +K + SL+    E   A  IL +
Sbjct: 417 IYETLIDLQDKGLKLSLDDFGAGYSSLTLLKDIPVHEIKIDKSLVNSLAENEKASFILET 476

Query: 902 IIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           I  M+  +    + + +     +K L ++G + IQ    + PL  +  + LLKE
Sbjct: 477 IAMMSHKLNVHTVVEGVETNEQLKILKQLGFNTIQGYLFSRPLPEDDFIALLKE 530


>gi|172056889|ref|YP_001813349.1| diguanylate cyclase/phosphodiesterase [Exiguobacterium sibiricum
           255-15]
 gi|171989410|gb|ACB60332.1| diguanylate cyclase/phosphodiesterase [Exiguobacterium sibiricum
           255-15]
          Length = 614

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 176/447 (39%), Gaps = 14/447 (3%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
              +++  ++  + +  +A  D  T + N +   +R   +       D     ++ + ++
Sbjct: 171 HLRNLSRLQQLADQLHESARHDLQTQLLNVRGLEERFLHV-------DQKNLLLVGVHLE 223

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            Y ++    G  +   VL+    R+  LL     + R+ G    +++          +  
Sbjct: 224 NYHELARYFGEEIQQQVLIDCIERLKTLLPPYLTIVRVEGGTLMVVMEKPPGVS-CEEEM 282

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM-YHAKHRGGNHVE 693
             + + ++ P  +   +I V   I        +++ ++ +     A     +        
Sbjct: 283 TRLSQRMSAPYQVENHQIYVNLYIVIDDGEVDQLSMTKRIHQITSAFPESIRDSAKVMCL 342

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           +      +S RV   + L  A  N + YLVY        +  +GLEAL++W+    G   
Sbjct: 343 NQEWRKEQSLRVEAAKALSRADVNHDFYLVYQLQYDSNQDRFIGLEALMRWNTTIPGAER 402

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            + F+ IAE+  +I  +  ++ E   +               + +N++ + L D      
Sbjct: 403 PTVFIPIAEKSDLIIRLGEWVFEEGCKTRKRLIGLVPEE-FSLSVNVSPRQLTDESFMPF 461

Query: 814 MQALISKTLYSPSRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           ++ ++ K    P +IK+  +ES  +    +     L R++ +   ++LDDFGT  +    
Sbjct: 462 IERMLLKYSLKPKQIKIEITESQSLDFESQPILRALRRIKTLNFPVSLDDFGTGHASYHV 521

Query: 873 LGYI-PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           L  + P   +K     +     +EKR +IL SI  +++++    I + +    +++    
Sbjct: 522 LERLLPLRQLKVPKQFIEQVEESEKRQSILESIFQLSQSMHVECIVEGVETGEEVQIAKD 581

Query: 930 MGCDYIQDSHVASPLGFNSILKLLKER 956
           +G    Q    A P+    I+ LL+ +
Sbjct: 582 IGIHLFQGYFFAKPVLLEEIICLLETK 608


>gi|94269109|ref|ZP_01291373.1| EAL [delta proteobacterium MLMS-1]
 gi|93451347|gb|EAT02217.1| EAL [delta proteobacterium MLMS-1]
          Length = 223

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 4/218 (1%)

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
           AL++W   + G +    F+ +AE   +I  +  ++L    R + +W        + + +N
Sbjct: 1   ALLRWHDKELGQVGPDRFIPMAEATGLIVPLGDWVLNTACRQLAAWYAAGRE--LKMAVN 58

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ +     +L   +  +++ T      ++L  +E+  M N   +   L  L  +G++L 
Sbjct: 59  LSPQQFRQPDLVNRLANILAATGAPAHLLELEITETAAMENFAATSRQLHNLSDLGLTLA 118

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKD 917
           LDDFGT  S L+YL  +P   +K + S ++  T  E    I+R+++ MA ++E   +A+ 
Sbjct: 119 LDDFGTGHSSLAYLKSLPISQLKIDRSFISDLTFEENNRIIVRAVLSMAASMELETVAEG 178

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  E  +  L +  C   Q    A  L    +   L +
Sbjct: 179 VESEEQLDFLRQHHCTSYQGWLFARALPAGQLEAFLDQ 216


>gi|167625792|ref|YP_001676086.1| diguanylate cyclase [Shewanella halifaxensis HAW-EB4]
 gi|167355814|gb|ABZ78427.1| periplasmic/7TM domain sensor diguanylate cyclase [Shewanella
           halifaxensis HAW-EB4]
          Length = 623

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/702 (15%), Positives = 218/702 (31%), Gaps = 91/702 (12%)

Query: 11  FEKAFLILVLFLLWMVSPSFAIEPINISSSD-RVLDLTSITRI--YVNQGEDFQVFTAAD 67
               + +LV+ LL+    + A EP+ I       + LTS   I  + +      +     
Sbjct: 1   MRILYQLLVIALLFFTGLTAAQEPLFIEEHTADEIPLTSNLYIAQFDDASN---LEQIVA 57

Query: 68  IDGISRRIEVSA--SSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSR 125
              +  R         I     W  F+LA+ +      ++   +  L    F+  +  + 
Sbjct: 58  SSPLKWREYNPKAMRGIAKSAYWVRFSLAHQASDPRALILSFANPHLDYIEFYHFNGSTL 117

Query: 126 RIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKD 183
                         R   S   ++           F + + T       I LW  + Y  
Sbjct: 118 LNQFQAGDSFPFSKRPILSTQLLYSFNSKQQDTHHFYLRVETSGTSNLPITLWTSDAYYQ 177

Query: 184 TVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL- 242
                ++  G  IG+   + IF  +  + + S            +  +++   G   +  
Sbjct: 178 DAERHSILYGFQIGILMAIGIFSLLIAVTSHSFSYSYYAGYVLSITLFVASLHGLAFRFI 237

Query: 243 VNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYIT-FSGIACIAILFCMSF 301
                                   +F    +     +  +  +   S    + +LF    
Sbjct: 238 WPEWPRMQEFALPALLSLSMMFAFLFSEKVMRLKYHNQAMLRLCRVSAAMSVLLLFIGLP 297

Query: 302 YYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKR 361
                  ++    +    +   Y  +    KG + A L    W  + +  +         
Sbjct: 298 LDYSTALNLNIYAVMLSCIMLMYMSLAQAFKGNKLAKLFAIGWAGMMLGALLSGAIYLGL 357

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           L  D+         + I ++    ++            I  + ER +             
Sbjct: 358 LHWDLQAKTPFILGLSIEVIFMAALL-----------AIRYNDERLA-----------KL 395

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
            I +D +                           +HI         L   V  R   L+ 
Sbjct: 396 QIQQDALLQAKKAEE--------------TKEEALHIE--ARSSEKLAKMVQERTLELEI 439

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
             R                                    E  ++ + +      D+LTG+
Sbjct: 440 ALR------------------------------------ELNEANQKLTEQTRIDSLTGV 463

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
            NR SF  R+       +       +++++DID++K IND  G   GD  L  +  ++ +
Sbjct: 464 KNRASFDRRILAE-GRISRRQQAPLSILMLDIDRFKLINDSYGHLAGDQALRVIADQLKQ 522

Query: 602 LL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIG 659
           +L +  D+++R  G  F IIL +  + +     A  +RK I+  PI      I +T SIG
Sbjct: 523 ILKRPTDLVSRFGGEEFAIILPN-TDKIGAQQVAETIRKVISKLPICWGGNRIRLTVSIG 581

Query: 660 FAS-WTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
            +S   +S+  ++ +L+ A+ A+Y AK+ G N V+ +     
Sbjct: 582 VSSEIITSEEHTTLLLEQADKALYQAKNDGRNQVKLYSPDQD 623


>gi|238895955|ref|YP_002920691.1| putative cytochrome C-type biogenesis protein [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548273|dbj|BAH64624.1| putative cytochrome C-type biogenesis protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 742

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 173/438 (39%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+     +   AF D +  +PN ++    L         +     T+  + I + + +
Sbjct: 317 TQQRLIYARVRQMAFLDPVVHMPNLRALSRAL---------NGTSWSTLCFLRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   +  LL+  + +  L+G+     L SE +  +I     ++R+
Sbjct: 368 GRHYGVLLRIQYKQMLANHLRTLLQPNEAVYHLAGHDLVFRLNSEGHQARIHLIDRSLRQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                 +     +   +  S          +     E+   A++++            + 
Sbjct: 428 F---RFHWDGVPLQPRIGMSYCNVRSPVKHLYLLLGELNTIADMSLASGHPENLQRRGAG 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V     D+V++   +  A+E+    L+  PI  +  +     E L++ +         +
Sbjct: 485 HVQQDLKDKVVMMNRILKALEHDHFVLMAQPIQGIRGDR--YHEVLVRMEGESGELTGPN 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +A E  +   ++ +++E     + + R       + + IN++   L  ++  + ++
Sbjct: 543 EFLPVAHEFGLSTRVDQWVIEHTLAFMDANRRALPG--LRLAINLSPVSLSRSQFPQEVE 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+      P +I    +E+  + NPE     L  LR +G  + +DDFGT  +  + L  
Sbjct: 601 ALLQAYNIEPWQIIFELTENYALSNPELVCQTLEHLRALGCRVAIDDFGTGYASYARLKT 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +     +     ++ SI  +A+     ++A+ +      + +  +G D
Sbjct: 661 MNVDILKIDGSFIRNLLASSLDYQVVDSICRLARMKNMQVVAEYVESPEIRQAVITLGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P+    + +
Sbjct: 721 YMQGYDIGVPVPLTQLAE 738


>gi|152989522|ref|YP_001351007.1| hypothetical protein PSPA7_5688 [Pseudomonas aeruginosa PA7]
 gi|150964680|gb|ABR86705.1| hypothetical protein PSPA7_5688 [Pseudomonas aeruginosa PA7]
          Length = 691

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/543 (17%), Positives = 203/543 (37%), Gaps = 14/543 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNF 464
           R  L +  S D +  +      +        + G   +  + G     +  I   D+  F
Sbjct: 145 RCQLLLDSSVDAI-TYVHDGMHIYANRSYMALFGYEDAEELEGLP--VIDLIASCDQGAF 201

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L  +   +R   +        D Q     I +   +  +G+    + I +++ +  +
Sbjct: 202 KDFLKGYQNDQRQT-ELVCTGVKLDGQEFKARISLSA-ATYDGEPCIQVVIRSEV-DNAE 258

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   + QD +TG+ NR  FLD L   +  + T      T+  I ++ Y  +    G
Sbjct: 259 LEEKLREVSSQDPVTGLYNRSHFLDLLDGAVQQAVTARKPS-TLAYIHLNGYPSLQADHG 317

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           ++  D +L  L   + E       LAR   + F  +                ++K     
Sbjct: 318 LSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGRTPEQAQPALQRLLKKVENHL 377

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  R    T SIG A +      + +++  A      A  +GG+ ++ +  +   +  
Sbjct: 378 FELNGRSAQATLSIGVAGFDEKTAKAQDLMNRAHRCADEAARKGGSQIKQYNPAEELAAA 437

Query: 705 VM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A++ +   L++ PII L  +     E L++  +P+   +  +EF+  A
Sbjct: 438 AQRGDVIAILQQALDTNSFRLLFQPIISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAA 497

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E  + + I+ +++    + +   R + +   +F+   ++S  L D  L   +   +   
Sbjct: 498 KEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVH--LSSASLQDPGLLPWLGVALKAA 555

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +    SE+      ++++ L   L  +     +  FG   +  + L ++    +
Sbjct: 556 RLPPESLVFQISEADATSYLKQAKQLTQGLATLQCQAAISQFGCSLNPFNALKHLTVQFI 615

Query: 882 KFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +GS +    + +   IL+ +I      E   I   +     +  L + G  YIQ  ++
Sbjct: 616 KIDGSFVQDLNQAENQDILKGLIADLHEQEKLSIVPFVESASVLATLWQAGATYIQGYYL 675

Query: 941 ASP 943
             P
Sbjct: 676 QGP 678


>gi|225873677|ref|YP_002755136.1| sensory box/GGDEF family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225791284|gb|ACO31374.1| sensory box/GGDEF family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 694

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 7/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A+E  EL   + P   +    +VG EALI+W HP    I    F+ +AE   +I 
Sbjct: 6   SDLERALERDELVPHFQPYFEMKTGRVVGFEALIRWQHPSGELILPDRFIPLAERSGLIT 65

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L  +    +   D      +   +N++   L D+ L +  +A  S   Y   R+
Sbjct: 66  PLTRNLLRHVMAAAVELPDH-----LHFSVNVSPLQLRDDTLPQMFEAAASAAQYPLQRM 120

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES ++ N +R+  +   L+ +G+ L +DDFGT  S L +L  +PFD +K + S +
Sbjct: 121 TVEITESALIDNLDRAASIAADLKSLGLLLAVDDFGTGYSSLKHLQALPFDVIKVDQSFV 180

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               E+R    I+ +++ + + +    +A+ +      + L  +GCD  Q      P+  
Sbjct: 181 RCMVERRESRKIVSAVLGLGQTLGLRTVAEGVETPDQERMLQWLGCDVGQGWLFGRPMPA 240

Query: 947 NSILKLLKE 955
             +   L+ 
Sbjct: 241 AHLGVFLER 249



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 4/138 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +    +     V  +  + W  D   + +T       + GL      G    
Sbjct: 394 ERRLAQNALRESEDHYRHTVELNPQVNWTCDAAGNLMTANHRWQELTGLTPEQSMGH--G 451

Query: 452 WLPYIHINDRDNFRTI-LDSFVGYRRGRLQY-EFRVRAADNQFHWMIIRIRPMSNSNGDI 509
           WL  +H  D    + + L S        +QY ++R+R    +F W+  R  P  +  G I
Sbjct: 452 WLTAVHPEDLPRIQPLWLHSVATGAPVDIQYRQYRIRTPHGKFKWVRGRGAPRRDEQGRI 511

Query: 510 LRYIGIANDITEQKKSLE 527
           +R+ G+  DI + K++ E
Sbjct: 512 IRWYGVVEDIDDLKRAEE 529



 Score = 43.4 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 52/180 (28%), Gaps = 6/180 (3%)

Query: 349 IWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQS 408
           +        +  R          +  + L   ++  +                       
Sbjct: 224 LGCDVGQGWLFGRPMPAAHLGVFLERMELTPPVMSGSGALSTDEEFRLDNSASRRLAHLQ 283

Query: 409 LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYIHINDRDNFRTI 467
                +   +   D      +    +A ++G ++ S  G  I   +P I    + + +  
Sbjct: 284 ALYDAAPVGLCFLDREMRFTSVNKRLAQMMGTSAISFVGRNIDEAMPRIAAEMKPSIQRA 343

Query: 468 LD-SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
           LD   +      L    RV   + +    ++  +P  +   +++       DITE++ + 
Sbjct: 344 LDGECISDLEVPLS---RVCTPE-EAGTALVSFQPARDEANEVVGVSLSFIDITERRLAQ 399


>gi|320193355|gb|EFW67993.1| putative sensor protein [Escherichia coli WV_060327]
          Length = 1105

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSD----RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAVMSLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|329903228|ref|ZP_08273399.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327548451|gb|EGF33125.1| GGDEF domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 642

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 189/490 (38%), Gaps = 25/490 (5%)

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               L       R     E+ V+       W +     +   N    +   + +D   Q 
Sbjct: 165 ILRPLHLVEAQARAICDREYPVQDK---LPWTLELRSVVVAMNRMTRKIKAMFDD---QA 218

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +++E +  ++++  LTG+ NR+ F  +L  +L  ++ D+     ++++++ ++K +N+  
Sbjct: 219 EAMERLRTDSYRHALTGLANRRYFDMQLQQLL--ASDDEFHTGALLLLELKEFKTLNEQR 276

Query: 584 GIAVGDDVLVSLTRRI----GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           G   GD++L      I             +A L+G  F ++L +  +  +       +  
Sbjct: 277 GYTAGDELLRGAVHVIDEVVQAEAGPDCFVAHLAGATFVLVLSNV-SEHEAIALGERLAA 335

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           ++                +G A +     ++SE L  A+ A+  A+++G N +       
Sbjct: 336 ALPQLHQRGLAGSDDVGHVGMAMYRH--QSASEFLSEADTALRAAQNKGPNTLHVHVSRG 393

Query: 700 FRSDRV---MIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSS 755
                +      E L   +E   + L   P++R   E  ++  E L++        I + 
Sbjct: 394 AAVVALTATRWSEFLRDVIERKNIVLHLQPVLRNSGERTVLHYETLLRVTGEDGQLIPAV 453

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A+ L +I+ I+  ++  +   +     Q       + +N+    L D      + 
Sbjct: 454 VFVPMAKRLGLIQQIDRLVVAEVLARL----QQRRYGDSIVAVNLFPATLQDAGFVAWLD 509

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           A +     +  RI     E   + + E  R L+  + + G    +D FG   +   YL  
Sbjct: 510 AALRADPVAAKRIAFEVPEYGALDHLESLRTLVNIVHRHGGQFGMDHFGRGFASFGYLAT 569

Query: 876 IPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           ++ +I  +A  ++  +IA+ +  + +   L  +  D
Sbjct: 570 LKLDYLKIDGSFIRAIDTQRDNQFLVEAICKIAHGLDVQVIAEAVETDAERAMLATLKVD 629

Query: 934 YIQDSHVASP 943
            +Q   +  P
Sbjct: 630 GVQGYGIGMP 639


>gi|296283910|ref|ZP_06861908.1| diguanylate cyclase/phosphodiesterase [Citromicrobium bathyomarinum
           JL354]
          Length = 431

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 177/414 (42%), Gaps = 16/414 (3%)

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP-- 606
           +    IL +   +   R   M++ + ++  +N   G   GD  L  + RR+    +    
Sbjct: 19  EEAREILGMWLAEGEARVHAMLLVLGRFDSVNLAHGAQTGDYALGEVGRRMAHFAQDEFA 78

Query: 607 ---DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN---LLEREITVTASIGF 660
               ++AR+ G +F +    + +  +    A  +   +A P+    L   ++    ++  
Sbjct: 79  RASWLVARIDGGKFLLATRDKCSRERWQFLAETLADGVAQPMAGSALGVPQLWPHIALIR 138

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
           A       T    L +A++A+   +           ++    D   I+ +L  ++E   +
Sbjct: 139 ALSGDDPTTVLARLGDAQIAL-RGESGRRIVWIDRDLAPAGFDVGQIEAELRRSLERGAI 197

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L + P   L D+ ++G EAL++WD P  G+I     + IA    +   +   ++E    
Sbjct: 198 SLRFQPQFALADDALIGAEALVRWDQPLLGDIGGEALLRIAARADLTTQLTRKVIEAALD 257

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
            +  W +      +   INI + DL      + +  ++ +    P+R+ L  +E  ++G+
Sbjct: 258 AVRGWPE-----GLKCSINITAADLAVVRFPDDLLRMVEERGVDPARLTLEITEQALLGD 312

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAI 898
            + +   LGRLR  G+ + LDDFG       YL Y+P D +K +  ++ G  E  +  A+
Sbjct: 313 LDLAARSLGRLRNAGMRIALDDFGAGFCNFGYLKYLPLDFIKLDRIMLDGVAESARDRAV 372

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           LR++I MA+ +E  +IA+ +  E   K     GC   Q    A PL     L L
Sbjct: 373 LRAVIAMARALELAVIAEGVEDETQRKIALEEGCSAYQGFLRARPLPHEEFLAL 426


>gi|107104058|ref|ZP_01367976.1| hypothetical protein PaerPA_01005131 [Pseudomonas aeruginosa PACS2]
          Length = 691

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/543 (17%), Positives = 203/543 (37%), Gaps = 14/543 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNF 464
           R  L +  S D +  +      +        + G   +  + G     +  I   D+  F
Sbjct: 145 RCQLLLDSSVDAI-TYVHDGMHIYANRSYMALFGYEDAEELEGLP--VIDLIASCDQGAF 201

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L  +   +R   +        D Q     I +   +  +G+    + I  ++ +  +
Sbjct: 202 KDFLKGYQNDQRQT-ELVCTGVKLDGQEFKARISLSA-ATYDGEPCIQVVIRGEV-DNAE 258

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   + QD +TG+ NR  FLD +   +  + T      T+  I ++ Y  +    G
Sbjct: 259 LEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPS-TLAYIHLNGYPSLQADHG 317

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           ++  D +L  L   + E       LAR   + F  +   +      A     ++K     
Sbjct: 318 LSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHL 377

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  R    T SIG A        + +++  A      A  +GG+ ++ +  +   +  
Sbjct: 378 FELNGRSAQATLSIGVAGLDEKTAKAQDLMNRAHRCADDAARKGGSQIKQYNPAEELAAA 437

Query: 705 VM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A+E +   L++ P+I L  +     E L++  +P+   +  +EF+  A
Sbjct: 438 AQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAA 497

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E  + + I+ +++    + +   R + +   +F+   ++S  L D  L   +   +   
Sbjct: 498 KEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVH--LSSASLQDPGLLPWLGVALKAA 555

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +    SE+      ++++ L   L  +     +  FG   +  + L ++    +
Sbjct: 556 RLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFI 615

Query: 882 KFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +GS +    + +   IL+ +I      +   I   +     +  L + G  YIQ  ++
Sbjct: 616 KIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYL 675

Query: 941 ASP 943
             P
Sbjct: 676 QGP 678


>gi|186472653|ref|YP_001859995.1| diguanylate phosphodiesterase [Burkholderia phymatum STM815]
 gi|184194985|gb|ACC72949.1| diguanylate phosphodiesterase [Burkholderia phymatum STM815]
          Length = 305

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 106/233 (45%), Gaps = 4/233 (1%)

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L + P++     + V  EAL++W HP+ G +  + F+ +AE+  +I+ I  +++ER   
Sbjct: 65  TLAWQPVVDRTARKTVCAEALLRWTHPELGVVPPARFVPVAEQAGLIERIGDWVIERACA 124

Query: 781 DIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
               WR     P + + +N++   L +      +   +  +   PS ++L  +ES  + +
Sbjct: 125 QAAQWRLHMA-PYLCVAVNVSPLQL-NRRFVRTVSRALEISGLPPSALELEITESQPVLD 182

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--I 898
              +   +  + K G+   +DDFG   S LSYL  +P   +K + S + G      +  I
Sbjct: 183 TRSAVSTIAAIAKFGVRFVIDDFGAGYSSLSYLRRLPLHGLKIDRSFVMGLPHDSRSAVI 242

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +  +  +A +I  T+ A+ +  E     L   G D +Q    +  +  +  ++
Sbjct: 243 VEGLAQIAHSISLTVTAEGVETEEQAVFLRECGIDRMQGFLYSRAVEPDDFVE 295


>gi|330007205|ref|ZP_08305930.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
 gi|328535495|gb|EGF61956.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
          Length = 742

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 173/438 (39%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+     +   AF D +  +PN ++    L         +     T+  + I + + +
Sbjct: 317 TQQRLIYARVRQMAFLDPVVHMPNLRALSRAL---------NGTSWSTLCFLRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   +  LL+  + +  L+G+     L SE +  +I     ++R+
Sbjct: 368 GRHYGVLLRIQYKQMLANHLRTLLQPNEAVYHLAGHDLVFRLNSEGHQARIHLIDRSLRQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                 +     +   +  S          +     E+   A++++            + 
Sbjct: 428 F---RFHWDGVPLQPRIGMSYCNVRSPVKHLYLLLGELNTIADMSLASGHPENLQRRGAG 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V     D+V++   +  A+E+    L+  PI  +  +     E L++ +         +
Sbjct: 485 HVQQDLKDKVVMMNRILKALEHDHFVLMAQPIQGIRGDR--YHEVLVRMEGESGELTGPN 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +A E  +   ++ +++E     + + R       + + IN++   L  ++  + ++
Sbjct: 543 EFLPVAHEFGLSTRVDQWVIEHTLAFMDANRRALPG--LRLAINLSPVSLSRSQFPQEVE 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+      P +I    +E+  + NPE     L  LR +G  + +DDFGT  +  + L  
Sbjct: 601 ALLQAYNIEPWQIIFELTENYALSNPELVCQTLEHLRALGCRVAIDDFGTGYASYARLKT 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +     +     ++ SI  +A+     ++A+ +      + +  +G D
Sbjct: 661 MNVDILKIDGSFIRNLLASSLDYQVVDSICRLARMKNMQVVAEYVESPEIRQAVITLGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P+    + +
Sbjct: 721 YMQGYDIGVPVPLTQLAE 738


>gi|300694217|ref|YP_003750190.1| diguanylate phosphodiesterase (signal transduction eal domain)
           [Ralstonia solanacearum PSI07]
 gi|299076254|emb|CBJ35568.1| putative diguanylate phosphodiesterase (signal transduction EAL
           domain) [Ralstonia solanacearum PSI07]
          Length = 433

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 164/408 (40%), Gaps = 23/408 (5%)

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-----ILARLSGNR 616
                 +++I  D + +    LG     +V+V    R+  L          ++ R+    
Sbjct: 7   SGGVGALLLIGFDHFAEAAASLGPLAARNVMVECASRLQALCPQAVDGAAPVVGRIGPET 66

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +   +  ++  + D A  +  S+  P      E+  + SIG   +      ++ +++ 
Sbjct: 67  FAVASAAFASAQAVHDLARRISASLTRPFITAGYELVCSCSIGMTMFDGPPADAARLIEQ 126

Query: 677 AELAMYHAKHRGGNHVESFRVSSFRSDRV----------MIKEDLCLAVENSELYLVYHP 726
           A+ A++H +H G      +  ++  +              +   L  A+   +  L   P
Sbjct: 127 ADRALFHVQHGGEQSPAMYAPAAASTPGAGGNDPVSEHPRLAAQLRHALARRQFSLNLQP 186

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
            + L++ +IVG E L++W  P+ G ++ ++F+ I E+   I+ +  ++L+  A+ +   +
Sbjct: 187 QLSLINGQIVGYEFLLRWISPELGGVAPTDFLPILEQTGGIREVGHWVLDNAAQMLAGLQ 246

Query: 787 DQ-------ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
            +       A  P +   +N++   LLD  L + ++ + ++     +R+    SE  ++ 
Sbjct: 247 REEAERAGTARQPDLHAAVNLSDAQLLDPRLSDVVRDIAARHAVPTARLVFEVSEHTLLR 306

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAI 898
               +R  +  L   G  + ++DFG     L  L     D VK +  ++   +       
Sbjct: 307 AGAAARQAVDALHACGARVAVEDFGATAHSLDCLAQFRPDQVKLDRGVVGAVSGTGDDTA 366

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           LR ++  A +    + A  +     ++ L    CD IQ   ++ P   
Sbjct: 367 LRRLVAAAHDAGVPVTATRVETAAQLQALRACRCDVIQGYLLSQPFPA 414


>gi|317053089|ref|YP_004119443.1| diguanylate phosphodiesterase [Pantoea sp. At-9b]
 gi|316953416|gb|ADU72887.1| diguanylate phosphodiesterase [Pantoea sp. At-9b]
          Length = 453

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 3/252 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           IK +L LA+E ++L L Y P +   ++ ++G EAL++W HP  G IS   F+ IAE+  +
Sbjct: 201 IKRELSLAIERNQLQLYYQPQLD-SNKALIGFEALLRWKHPAKGFISPEVFIPIAEKSGL 259

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  +++E+  R I  W    ++  I   INI+   L+     +     +S++   P 
Sbjct: 260 IIDIGRWVMEQTLRQIAEWERLHHLGDIAFSINISPLQLMHRNFTQDTLLTLSRSKIRPE 319

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           RIK   +E+  + + E+   ++ R   +GI   +DDFG   S L  +     D +K + S
Sbjct: 320 RIKFEITETTFIYDQEKIAEVMHRFSALGIKWAIDDFGVGYSSLKSISDFAVDDIKIDKS 379

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+      E    +++  I +++ +   ++A+ I  E   + L +MGC   Q  H A PL
Sbjct: 380 LIMQVFKNESASLVVQKTIELSREMGLNVLAEGIENEEYFEYLKKMGCHLFQGFHFARPL 439

Query: 945 GFNSILKLLKER 956
                L  +K++
Sbjct: 440 PAADALMWIKKQ 451


>gi|149186685|ref|ZP_01864996.1| diguanylate cyclase/phosphodiesterase [Erythrobacter sp. SD-21]
 gi|148829593|gb|EDL48033.1| diguanylate cyclase/phosphodiesterase [Erythrobacter sp. SD-21]
          Length = 439

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 185/431 (42%), Gaps = 16/431 (3%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT-VMVIDIDKYKKINDVLGIAVGDDVLV 593
           QD LTG+ +     + +T+  D     +   P   M+I + +   +N   G   GD  LV
Sbjct: 13  QDVLTGLGDASQLRETVTSWCDRWPEKNGPCPVNAMLISLGRMDTVNVAFGETAGDSALV 72

Query: 594 SLTRRIGELLKFP-----DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI--N 646
            +  RI             +  RLSG  F +   SE +  +    A A+  ++A PI   
Sbjct: 73  EVAHRIRHFANDELESDPWLAVRLSGGNFMLATRSECSRERWQWLAEALADALASPISSP 132

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN-HVESFRVSSFRSDRV 705
                + +   I       +      + + +++A    + RG      S  V+S     V
Sbjct: 133 DSNSSLRLWPRIALMRAGPNDNVDKMLDRLSDVASNMRQSRGRRIDWSSGEVASAPRSNV 192

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A++  E+ +++ P   L+ + ++G EAL +W HP  G I  +    IAE   
Sbjct: 193 ELEADLLAAIDRDEIEILFQPQYSLVSDRVLGAEALARWHHPIVGRIGGAALFQIAERAD 252

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            +  ++  + +R     + W  +     + + INI   DL  +        +  +  +  
Sbjct: 253 HVAHLSRHIAQRALEAAMEWPHE-----LRLSINITPTDLAVDNFAIEFARMAERVGFPL 307

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           SRI L  +E V++ + +R   +L +L+ + + + LDDFG       YL  +P D +K + 
Sbjct: 308 SRITLEITEQVLLADLDRVSHVLQQLKVLDVRIALDDFGAGFCNFRYLKVLPIDCIKLDR 367

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S++ G    E+  A+ R+I+ MA+ ++  ++ + I  E+    +    C+Y Q    A P
Sbjct: 368 SMVEGVLEDERDRAVFRAIMGMARALDLRVLVEGIESELQRDFVAAEDCEYYQGFLRAEP 427

Query: 944 LGFNSILKLLK 954
           +   + L  + 
Sbjct: 428 MAPRNFLAKVA 438


>gi|207739536|ref|YP_002257929.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
 gi|206592916|emb|CAQ59822.1| signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum IPO1609]
          Length = 434

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 168/414 (40%), Gaps = 29/414 (7%)

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD-----ILARLSGNR 616
                 +++I  D + +    LG     +V+V    R+  L          ++ R+    
Sbjct: 2   GGGVGALLLIGFDHFAEAAASLGPLAARNVMVECASRLQALCPQAAGDAAPVVGRIGPET 61

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +   +  ++  + D A  +  S+  P      E+  + SIG   +      ++ +++ 
Sbjct: 62  FAVASAAFASAQAVHDLARRISASLTRPFITAGYELVCSCSIGMTMFDGPPADTARLIEQ 121

Query: 677 AELAMYHAKHRGGNHVESFRV----------------SSFRSDRVMIKEDLCLAVENSEL 720
           A+ A++H +H G      +                  +   S+   +   L  A+   + 
Sbjct: 122 ADRALFHVQHGGEQSPAMYAPAAPTPGAEGVAADTGANDPVSEHPRLAAQLRHALTRRQF 181

Query: 721 YLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIAR 780
            L   P + L++ +IVG E L++W  P+ G ++ ++F+ I E+   I+ +  ++L+  A+
Sbjct: 182 SLNLQPQLSLVNGQIVGYEFLLRWISPELGGVAPADFLPILEQTGGIREVGHWVLDNAAQ 241

Query: 781 DIISWRDQ-------ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            +   + +       A  P +   +N++   LLD +L + ++ + ++     +R+    S
Sbjct: 242 MLAGLQQEEAERAGTARQPDLLAAVNLSDAQLLDPQLSDTVRDIAARHAVPTTRLVFEVS 301

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG-ST 892
           E  ++   E +R  +  L   G  + ++DFG     L  L     D VK +  +++  + 
Sbjct: 302 EHTLLRAGEAARQAVDALHGCGARVAVEDFGATAHSLDCLAQFRPDLVKLDRCVVSAVTD 361

Query: 893 EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               + LR ++  A +    + A  +     ++ L    CD IQ   ++ P   
Sbjct: 362 AGDDSALRHLVAAAHDAGVPVTATRVETAAQLQALRACRCDVIQGYLLSQPFPA 415


>gi|296136287|ref|YP_003643529.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
 gi|295796409|gb|ADG31199.1| diguanylate cyclase with PAS/PAC sensor [Thiomonas intermedia K12]
          Length = 440

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +V +++       +   +  ER S A+  + D +WDW+++ D V  +P +  +LG    
Sbjct: 114 LSVARNISKRLSLDEASSTRDERLSFALEQAMDGLWDWNLLTDAVYFSPQLKRMLGYGPD 173

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            M   +  W   +H +DRD   +++D  +  R  R + E+R+R  +    W+  R +   
Sbjct: 174 EMTPHVETWKHNVHPDDRDQVMSLIDQHLRGRLMRFEAEYRLRNRNGHDIWVHDRGQVCE 233

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++ G   R +G+  +IT++K     +   A  D+LT IPNR++ +  L   + LS    
Sbjct: 234 RDAQGRPTRMVGMVQNITDRKLLELRLEKMASIDDLTQIPNRRAGMAALAQQIALSERSG 293

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               +V V+DID +K +ND  G AVGD+VL  + R + + L+  D++ R  G  F +IL 
Sbjct: 294 GA-LSVGVLDIDAFKSVNDRFGHAVGDEVLHQVARLLRQTLRPGDLVYRSGGEEFVLILP 352

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +       A  A       A           VT SIG AS+   +    ++L  A+LA+Y
Sbjct: 353 AAGRETADAIAADIHAAFAAKDWEGDLSVPGVTVSIGLASYPQDQPQLHKLLDQADLALY 412

Query: 683 HAKHRGGNHVE 693
            AK  G N   
Sbjct: 413 RAKESGRNRTC 423


>gi|330501607|ref|YP_004378476.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
 gi|328915893|gb|AEB56724.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
          Length = 689

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 209/571 (36%), Gaps = 12/571 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +++V       ++   A       +    +R  L +  S D +  +      +       
Sbjct: 115 LVLVAKRELANLEERRARRAAEVALREAEKRCQLLLESSVDAI-TYVHDGMHIYANRAYL 173

Query: 436 TILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            +        + G     +  I   D   F+  L ++     G  +   +   AD     
Sbjct: 174 ELFSYEDGDELEGMP--MIDLIASADHGAFKDFLKNYQSAE-GHAELNCQGVRADGSSFA 230

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +   P +  +G+    + +    T   +  E +   + QD +TG+ NR  FL+ +   
Sbjct: 231 AQMSFSP-ATYDGEPCIQV-VIRAETSNAELEEKLREISSQDLVTGLFNRNHFLELMDNA 288

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
            + + +      T+  I +D+Y  +   +G+A  D +L  L   +         LAR   
Sbjct: 289 AERAVSTGQPS-TLAYIRVDRYAGMQGEIGLAGIDMLLTDLAGLLRAHFPVETQLARFGD 347

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F  +L  +      A  A  ++K      ++  R +  T SIG A  +     + E++
Sbjct: 348 DVFAALLPGQTPEQCQASLAALLKKVEGHLFDVSGRTVQTTLSIGVAGLSEKTAKAQEVI 407

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDE 733
             A              + +       +     +   +  A+EN+   L++ PII L  +
Sbjct: 408 DRAHRCADELSDGNAIKLFNPADELAAAANRGNLLAMVQQALENNSFRLLFQPIISLRGD 467

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
                E L++  +P+   +  ++F+  A++  + + I+ +++    + +   R + +   
Sbjct: 468 AHEHYEVLLRLLNPQGEEVPPAQFLAAAKDAGLGEKIDRWVILNSIKLLADHRSKGHNTR 527

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+   ++S  L D  L   +   +         +   FSE   +   +++++L   L +
Sbjct: 528 LFVH--LSSASLQDQTLLPWLSVALKAARLPSDSLVFQFSEPDAITYLKQAKVLTQGLAE 585

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETT 912
           +   + L  FG   +  + L ++  D VK +GS             L++++         
Sbjct: 586 LHCKVALSQFGCALNPFNTLKHLQVDFVKVDGSFSQDLSNADNQEALKTLLSSLHAQAKL 645

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            I   +     +  L + G ++IQ  ++  P
Sbjct: 646 TIVPFVESASVLATLWQAGVNFIQGYYLQGP 676


>gi|91211356|ref|YP_541342.1| putative sensor protein [Escherichia coli UTI89]
 gi|117624264|ref|YP_853177.1| putative sensor protein [Escherichia coli APEC O1]
 gi|218558948|ref|YP_002391861.1| sensor protein [Escherichia coli S88]
 gi|237704524|ref|ZP_04535005.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072930|gb|ABE07811.1| putative sensor-type protein [Escherichia coli UTI89]
 gi|115513388|gb|ABJ01463.1| putative sensor-type protein [Escherichia coli APEC O1]
 gi|218365717|emb|CAR03453.1| putative diguanylate cyclase, GGDEF domain signalling protein
            [Escherichia coli S88]
 gi|226900890|gb|EEH87149.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294490682|gb|ADE89438.1| sensory box-containing diguanylate cyclase [Escherichia coli IHE3034]
 gi|307626386|gb|ADN70690.1| putative sensor protein [Escherichia coli UM146]
 gi|315285702|gb|EFU45142.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323951821|gb|EGB47695.1| GGDEF domain-containing protein [Escherichia coli H252]
 gi|323956103|gb|EGB51855.1| GGDEF domain-containing protein [Escherichia coli H263]
          Length = 1105

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 198/553 (35%), Gaps = 17/553 (3%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDRVMIKEDL---CLAVENSELYLVYHPIIRLM--DEEIVGLEALIQWDH 746
            V  +      +        L      ++ ++L ++ H +          + L +L  W  
Sbjct: 840  VTVYEPQQAAAHSERAAISLDEQRRMIKENQLMMIAHGVASPRIPQARNLWLISLKLW-S 898

Query: 747  PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLL 806
             +   I    F     +  +  A++  +     +             + I + ++   L 
Sbjct: 899  CEGEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAIASKG---LSIALPLSVAGLS 955

Query: 807  DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
               L   +   +  +   P  + L      ++ +         +LR  G  +     G  
Sbjct: 956  SATLVNELIEQLENSPLPPRLLHLIIPADAILDHAASV----QKLRLAGCRIVFSQVGRD 1011

Query: 867  CSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDI 924
              + + L     D +  +G L            ++  I   A+ +    IA  +   + +
Sbjct: 1012 LQIFNSLKANMADYLLLDGELCASVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVM 1071

Query: 925  KELTRMGCDYIQD 937
              L+ +G D I  
Sbjct: 1072 DTLSGIGVDLIYG 1084



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRITVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|325972552|ref|YP_004248743.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
 gi|324027790|gb|ADY14549.1| diguanylate cyclase/phosphodiesterase [Spirochaeta sp. Buddy]
          Length = 634

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 177/423 (41%), Gaps = 13/423 (3%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
             D+LTG+P       +L  +            T++++DI+ +       G    D +LV
Sbjct: 221 TFDSLTGLPTEALLQRKLIRLFRF-----QTPYTIILVDIENFPYFIAKNGSVSADRLLV 275

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L   +  L    + + R+   +F + L S            A+R+ +     +      
Sbjct: 276 ELALFLKTLGGSNE-VFRIDQQQFCLCLPSSK-GGSGGSVIQAIRQRMEQGWEVQGAPTF 333

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKEDL 711
           +  ++G  S      T  E  +  +      +      V  +       +   + I   L
Sbjct: 334 IQMNLGLLSIPKQAATLDEYHQAYKQMQSEIRSVRKRAVFVYTKKDALSQQQTMNIISAL 393

Query: 712 CLAVEN-SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
             ++ N  ++ + Y P+  +    IV  EAL++ +    G ++ S+F+ +AE+  +I  +
Sbjct: 394 RASIRNPEQVLVHYQPMYDVQTGRIVSAEALMRINDEHLGFLNPSQFIFLAEQTGLIVHL 453

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L ++   I     +  +   +I +N++ +D    ++ + + ++I +      +I  
Sbjct: 454 TQILLAKVCTLIRQNLAKNALE--YISVNLSGEDFTSRQMGQTLLSIIQQENIPSRKIGF 511

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESVV+ + +    ++  L    I   LDDFGT  S L  L  +P+  VKF+ S++ G
Sbjct: 512 EITESVVLQSYDMVADVMLELSLKDIKFALDDFGTGYSNLQALMDLPYAYVKFDKSVIQG 571

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +      +L  +  M   +   +IA+ +  E  ++ + ++G + +Q  + + PL   + L
Sbjct: 572 AMSN-PTMLTLLSDMLHKLGKVLIAEGVETEQQLEMIKKIGIERVQGYYYSKPLEKEAFL 630

Query: 951 KLL 953
           +L+
Sbjct: 631 ELV 633


>gi|264677656|ref|YP_003277562.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
 gi|262208168|gb|ACY32266.1| diguanylate cyclase/phosphodiesterase with [Comamonas testosteroni
           CNB-2]
          Length = 637

 Score =  271 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 144/360 (40%), Gaps = 6/360 (1%)

Query: 336 RAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPA--LVGGLVLIVILIGFTVIQHVLAT 393
           R  ++   W +       L   + + L   I      L   L  ++ L+     +   A 
Sbjct: 268 RLRMMGQTWTVRLHGSTSLLQRVDRGLPIVIAVTGVLLSAMLAGLMFLLVSGRSRAEAAA 327

Query: 394 GYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNW 452
              ++ +  +  R S  + G+    W+W++         + A I+G     +    I  W
Sbjct: 328 RAMTEDLSLERSRLSAILEGTRVGTWEWNVQSGETVFNEEWARIVGYKLQELEPISIVTW 387

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILR 511
               H  D      +L           + E R+R  D  + W++ R +    + +G  L 
Sbjct: 388 AKLTHPEDLQKSEQLLKQHFAGELPFYECEARMRHKDGHWIWVLDRGKVGKWDRDGKPLI 447

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             G   DI+  ++ L+     A  D LT +PNR    DR+   L L+   +N    V+ +
Sbjct: 448 MYGTHQDISRSRQELDTYHHRAHHDVLTDLPNRVLLGDRIQQALALAKR-ENTHLAVLFM 506

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D +K +ND  G   GD VL ++ RR+   ++  D LAR+ G+ +  +L   ++  +  
Sbjct: 507 DLDGFKSVNDTHGHEAGDVVLKTVARRLLRCIRASDTLARVGGDEYVALLQHVSDEQEAL 566

Query: 632 DFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
             A      +  PI L    E  ++ S+G A +     T   + ++A+ AMY  K    N
Sbjct: 567 KKASLFISEVRRPIPLPAGGEARISISVGIALYPQHGTTIEVLSEHADQAMYQVKKGSKN 626


>gi|307721219|ref|YP_003892359.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979312|gb|ADN09347.1| diguanylate cyclase/phosphodiesterase [Sulfurimonas autotrophica
           DSM 16294]
          Length = 524

 Score =  271 bits (694), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 175/435 (40%), Gaps = 30/435 (6%)

Query: 518 DITEQKKSLEGILCNAF----QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           D + +K +++      F     D+LT +PN       L                ++++ I
Sbjct: 101 DHSNKKSNIQEYRTELFKRYFTDHLTNLPNLYQLRKDLENC---------EECGLILLKI 151

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D ++ IN+  G  VGD VL  + + + E+L     + RLSG  + II+        +  +
Sbjct: 152 DNFQTINNFYGFVVGDYVLEYVGKYLKEVLVPH-QVYRLSGAEYAIIIDDNLGFYHLKAY 210

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              +   I   I +  +E  +      AS +        +     +A+ HAK +G  +  
Sbjct: 211 LAELYDKIKN-IKVAYQETQIFVDFTLASSSDRINN--NIFSKVSMALMHAKKKGVPYWI 267

Query: 694 S---FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
                         + +   +  AV+N  +   +  I+    ++I   E L +       
Sbjct: 268 YEDKMHFEDEYHRNLQLSYVVREAVQNDRIVPYFQAILDNKTKQITKYECLARLIDVNEK 327

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            +S   F+ IA+ + +   +   ++ +          +         IN++ +D++ +E+
Sbjct: 328 ILSPLLFIPIAKNIKIYNDVTKTIVNKSFAAFEENEFEF-------SINLSIEDIMSSEI 380

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              +   +  +  + SR+     ES  + + +R    +  + + G  + +DDFG+  S  
Sbjct: 381 FNFILDKLKNSR-AASRVTFELLESEAVQDFKRVDRFISEVVRYGAKIAIDDFGSGYSNF 439

Query: 871 SYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SY+  I  D +K +GSL+      E    ++ +I+  AK +    IA+ ++  + + ++ 
Sbjct: 440 SYITKINADYIKIDGSLIENIDIDEASEVVVDTIVQFAKKLGIKTIAEYVHSSVVMDKVC 499

Query: 929 RMGCDYIQDSHVASP 943
            +G DY Q  ++  P
Sbjct: 500 ELGIDYSQGFYIDEP 514


>gi|168217524|ref|ZP_02643149.1| putative diguanylate cyclase [Clostridium perfringens NCTC 8239]
 gi|182380483|gb|EDT77962.1| putative diguanylate cyclase [Clostridium perfringens NCTC 8239]
          Length = 507

 Score =  271 bits (694), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/426 (22%), Positives = 175/426 (41%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R  F + L               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFEFKNNLEMW--------KGEYTLFLIDLRKFSLINDALGRGKGDEVLREF 138

Query: 596 TRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + +  +   L   ++     G  F + + S  N   I +    +     + +N   +EI
Sbjct: 139 GKGLNNISKSLASKNLYGVYGGEEFLVAINS-RNKEDIIEVLNKLDNLKKIRLNSFNKEI 197

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +  +IG++       +  E+++    A   AK    +    +        +    I  D
Sbjct: 198 KMEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEAFSSSIEYTEELKSIRKKNNLIIRD 256

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  ++ N +LY VY P I  +D +I G E LI+W+H   G+IS+S+ +   EE+  IK +
Sbjct: 257 IKDSLINKKLYTVYQPQISSLDNKIKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDL 316

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L++ E             N   +   +NI+   L    +   +  +       P  I L
Sbjct: 317 DLYVFESTCEFQSRLIQ--NNIELQCSVNISVNTLKHRGVGSNLYKISKNYNLKPENITL 374

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++ 
Sbjct: 375 EILENANLEVSGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISD 434

Query: 891 S-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     
Sbjct: 435 IPNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEF 494

Query: 950 LKLLKE 955
           L+ +  
Sbjct: 495 LEYVNN 500


>gi|223041290|ref|ZP_03611532.1| cyclic diguanylate phosphodiesterase [Campylobacter rectus RM3267]
 gi|222877445|gb|EEF12584.1| cyclic diguanylate phosphodiesterase [Campylobacter rectus RM3267]
          Length = 646

 Score =  271 bits (694), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 194/432 (44%), Gaps = 36/432 (8%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +    + D LTG+PN+ +      T+           P ++++DID+++K+N+  
Sbjct: 227 ENNAQMQKRLYSDALTGLPNKTALERDTETM---------KNPKIIIMDIDEFRKMNNYF 277

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G AV D +L+ +T+   +      + + R+  ++F ++  +E    +  D A  +  +I 
Sbjct: 278 GAAVCDQILLKMTQISQKFADDNGMAVYRVGADQFALVEDAELFIDRYEDLATELLDNIK 337

Query: 643 MPI------NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
             +      +  + EI +  ++GFA         ++  K A  A+  AK  G ++   F+
Sbjct: 338 GLVIDVATEDGEQNEIEIHCTVGFAL------DETDTFKKAMTALEFAKQTGKDYFCYFK 391

Query: 697 VSSFRSDRV-MIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                      I+    +  A+ N ++   Y PI    D++I+  E LI+  +     IS
Sbjct: 392 NIDDTPQYAEQIERSNMIRNAIINDKIVPFYQPIFN-KDKQILKYETLIRIQNSN-EIIS 449

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
            S F+ +++ +     I   ++E+  + I         P   I +N++ +D+ D ++   
Sbjct: 450 PSIFLEVSKRIKRYTDIEKMLIEKSFKLIAD------KPETMISVNLSGRDMTDGDVSVF 503

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   ++K      R+     E   + N ER    + R+R++G  + +DDFG+  S  SY+
Sbjct: 504 IIEKMNKYKV-AGRVIFEILEDENIENIERISAFIERVRRMGAKIAIDDFGSGYSNFSYI 562

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +GS++      E   AI  +II  AK ++ TIIA+ ++ +        +G
Sbjct: 563 LKLKPDYIKIDGSIIKNIDSSEDSRAIAGAIIAFAKKLDITIIAEFVHSKEVFDACIELG 622

Query: 932 CDYIQDSHVASP 943
            D  Q  ++  P
Sbjct: 623 VDEFQGFYLGEP 634


>gi|332186773|ref|ZP_08388515.1| EAL domain protein [Sphingomonas sp. S17]
 gi|332013106|gb|EGI55169.1| EAL domain protein [Sphingomonas sp. S17]
          Length = 438

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 182/391 (46%), Gaps = 9/391 (2%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++ I  +  +   +G      +  ++  R+   L     + R +      I++     
Sbjct: 32  LILVAIGNFAMLRRHVGREQSAMLAEAVAARV-AGLFPEATV-RATSTTQIEIMMLAPQR 89

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +      +  ++A P  +  +E  +   +G A+ T+       +L+ AE A+  A   
Sbjct: 90  AALDVNLALLGTALARPFTVAGQECGIEPVLGAATATNPHEDDIRLLEEAEQALADAHIE 149

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             + V    V + R DR+ +  +L  A+E   L++ Y P + +  + +  +EAL++W HP
Sbjct: 150 CRSVVRDLVVRTDRLDRITLARELTQAIERDALFVEYQPKVHVRQQRVCSIEALLRWRHP 209

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G IS  EF+ +AEE  +I  + L+ + R+  D      + +     I INI+   L D
Sbjct: 210 VHGMISPVEFIPVAEESRIIAPLTLWTIRRVIADQRRLAARGHEQ--RIFINISGVLLGD 267

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +      AL++ +  S   +    +E+ V+ +PE +   L     IGI+L +DD+G   
Sbjct: 268 RDFVRQACALVTDSGAS---VGFEITETSVIRDPESAIANLQTFVDIGIALAIDDYGAGL 324

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S LSYL  +P   +K +   +T  T       I+RS I +A  +E  ++A+ +     + 
Sbjct: 325 SSLSYLKQLPACELKIDKLFITQLTSSNRDPLIVRSTIDLAHALEMEVVAEGVETPAALA 384

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            LT MGCD +Q   ++ P+GF+++ + L E+
Sbjct: 385 LLTVMGCDMVQGYLISRPIGFDALCQFLDEQ 415


>gi|188580803|ref|YP_001924248.1| diguanylate phosphodiesterase [Methylobacterium populi BJ001]
 gi|179344301|gb|ACB79713.1| diguanylate phosphodiesterase [Methylobacterium populi BJ001]
          Length = 328

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 7/248 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            DL  A++  E  L Y PI+      I G EAL++WDHP  G +S ++F+ +AEE   I 
Sbjct: 63  ADLRAALDGDEFSLAYQPIVSAATRAITGCEALLRWDHPILGPVSPADFVPLAEETGAIG 122

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  ++LE   R   +W +        + +N++   L        + A +  +  +  R+
Sbjct: 123 PIGRWVLETACRQAAAWPEH-----CRVSVNVSPVQLQAPGFAAQVAAALQASGLAARRL 177

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           +L  +E V M +   +   +  +R +G+S+ LDDFGT  + L YL    FD +K + S +
Sbjct: 178 ELELTEGVPMRDAAVALNGIVAVRALGVSVALDDFGTGFASLGYLQRFVFDRIKIDRSFI 237

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 R +  ++R++  +A +    + A+ I  E + + L   G   +Q    + P+  
Sbjct: 238 RDLGAARESWFLVRTMHDIAHHFGMAVTAEGIETEDEAQLLREFGSRELQGFLFSRPVTS 297

Query: 947 NSILKLLK 954
            ++ +LL 
Sbjct: 298 AALTELLA 305


>gi|52840328|ref|YP_094127.1| diguanylate cyclase/phosphodiesterase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52627439|gb|AAU26180.1| diguanylate cyclase/phosphodiesterase domain 2 [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 533

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 91/433 (21%), Positives = 202/433 (46%), Gaps = 23/433 (5%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+LT +PN +   +++   ++   +       V+VI I+    +N        ++++  
Sbjct: 112 YDSLTNLPNNRLLNEKIRLAIEQLGSQG--ELAVIVIKIND---LNYNFSSFNTNNIVKQ 166

Query: 595 LTRRIGELLKFP---------DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
              ++  +L  P         +++ARL  + F I++      L+I +  I +   +   +
Sbjct: 167 FAEKLKSVLIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLEINELLIHLLTLLNSNL 226

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH-VESFRVSSFRSDR 704
            +    I +  ++G A +         +L +A +A+Y A+    ++ + S  +     + 
Sbjct: 227 MVDGININLATTVGAAIYPIHGEEDDVLLNHAIIAVYQARKENKSYAIYSPEMEEDLINN 286

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
            ++  +L  ++EN +L + Y PI+ L + +IVG E+  +++HP+ G +S+ +FM + E  
Sbjct: 287 RIVMNELQRSIENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLSAEKFMPLIEGT 346

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  +   ML+ + + + +W D  +   IF+  N++     +  L + ++ L++    +
Sbjct: 347 SLIHNLTTLMLKEVIKQLAAWHDAGH--KIFVSANLSV----NRGLPDLIEKLLNDYEIA 400

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  +KL F+E   +     +  +  RL  +GI L +DDF ++ S   YL   P + +K  
Sbjct: 401 PQFLKLEFTERTCLAEQMVTSEVFERLSTMGIKLCIDDFCSENSSFIYLTDFPIENIKVE 460

Query: 885 GSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            S +       K+  I+ +I+ +A+ +    +A  I  +  +++L  +GC Y Q  + + 
Sbjct: 461 KSFVLKIAKDAKKAKIVEAIVKLAQTLGWEPLADGIADQNALEKLRDLGCLYGQGLYFSR 520

Query: 943 PLGFNSILKLLKE 955
            +       LLK+
Sbjct: 521 AVNVAEFTSLLKK 533


>gi|26248442|ref|NP_754482.1| putative sensor protein [Escherichia coli CFT073]
 gi|300978928|ref|ZP_07174441.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301048794|ref|ZP_07195792.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|331658147|ref|ZP_08359109.1| putative sensor-type protein [Escherichia coli TA206]
 gi|26108847|gb|AAN81050.1|AE016763_9 Hypothetical protein yegE [Escherichia coli CFT073]
 gi|300299379|gb|EFJ55764.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300409561|gb|EFJ93099.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|331056395|gb|EGI28404.1| putative sensor-type protein [Escherichia coli TA206]
          Length = 1105

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAISLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|315294411|gb|EFU53759.1| PAS domain S-box [Escherichia coli MS 153-1]
          Length = 1105

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   + AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRIGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAISLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|260775732|ref|ZP_05884628.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608148|gb|EEX34317.1| predicted signal transduction protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 560

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 212/549 (38%), Gaps = 24/549 (4%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
               + + +W      +             L  G +   + +W   IH  D  +F   LD
Sbjct: 17  IFNTTKEGLWSMSGDNELSFFNHTFYQQFSLPFGRV--TLAHWKSLIHPADLQHFSRTLD 74

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGI 529
             + Y   ++   +RV+    +F W+      +  ++G+    +G   D++E+    + +
Sbjct: 75  EQIQYGFDKITVHYRVQNRQQRFVWIEATSLVVYEADGE-HYLVGNHRDVSEKMWVEDYL 133

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
              A+ D  TG+ NR+  LD         +  D    TV  + I K  ++    G  +  
Sbjct: 134 THAAYHDEETGVYNRRKLLDD--------SDFDVNAHTVFALRIPKMGELIRRWGHHIVS 185

Query: 590 DVLVSLTRRIGELL-KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLL 648
           ++   L  R+ +     P  + R + + F +    + +  K+ +    +  S      + 
Sbjct: 186 EIAYDLISRLKDTFGHAPYRIYRCTLDMFVVRAAGDYSRSKLENITSKLLAS----YFVK 241

Query: 649 EREITVTAS---IGFASWTSSKITSSEMLKNAELAMYHAKHR--GGNHVESFRVSSFRSD 703
           + E     S         ++ K+    +L        HA+        + + ++ +    
Sbjct: 242 DHEQKWLTSQDIAIGIMTSNIKMAPDRLLDTLSKLCEHAQSLPVDRVALYTGKIQTNIER 301

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             +I+  L  A++   +     PI  L   ++ G E   +W HP+ G +   EF+++AE+
Sbjct: 302 YFVIRATLPQAIQTQAISFQVQPIFSLETTQVTGYEVFARWVHPELGLLEPDEFVIVAEQ 361

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           L +I+++   + ++  R   +  +  +     + +NI+  +LL+ +    ++  + +   
Sbjct: 362 LGLIQSLGYSIFQQACRYFSTL-EVHHFELFSVHLNISILELLNPQFALLLRHTVERFNL 420

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  I L  SE  +     +    L +L + G  L +D FGT    L++L  +P   +K 
Sbjct: 421 QPHYIVLELSELQLEDFDTQILHQLSQLHRHGFRLAIDQFGTSLQSLTHLIKLPVSLIKI 480

Query: 884 NGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
              L+       +    L+ +I  + + +  +IA  I    D   + ++G    Q     
Sbjct: 481 APGLVASAQHDPRCYQTLQILIEFSVDRDIEVIAVGIENAEDKTLIQKLGVHLYQGFLSY 540

Query: 942 SPLGFNSIL 950
            P+  NS L
Sbjct: 541 PPVEPNSFL 549


>gi|324006454|gb|EGB75673.1| PAS domain S-box [Escherichia coli MS 57-2]
          Length = 1105

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 198/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTVYEPQQAAAHSERAAISLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A     +
Sbjct: 1073 TLSGIGVDLIYGDVIADAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|254229625|ref|ZP_04923036.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262393838|ref|YP_003285692.1| hypothetical protein VEA_003067 [Vibrio sp. Ex25]
 gi|151937824|gb|EDN56671.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           sp. Ex25]
 gi|262337432|gb|ACY51227.1| hypothetical protein VEA_003067 [Vibrio sp. Ex25]
          Length = 818

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/600 (17%), Positives = 219/600 (36%), Gaps = 49/600 (8%)

Query: 371 LVGGLVLIVILIGFTVI-QHVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVR 425
           ++    LI + I F  + + ++      Q   +  E  +  +    D     V   D   
Sbjct: 89  MLNEARLIHVTISFEKLNERIVQGSIIPQLTITGCEELAKILETIFDLPNVGVLVADEDT 148

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
             +         +G  +  + G         H +    F   L   +    G        
Sbjct: 149 RILGCNRAFELQMGYQNRDLVGLKTYIFSTSHHS--QAFYDQLWQHID-DEGYWSGNLLS 205

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE-----QKKSLEGILCNAFQDNLTG 540
           R A+       + I  ++  +G IL Y+G + DI+      + +  +    +AF      
Sbjct: 206 RTANGSNQAHHLCIYRLTFHSGRIL-YLGFSTDISASLLWMKNRCEQQHDWSAF------ 258

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK---INDVLGIAVGDDVLVSLTR 597
           +P+R+ F  +L  +   +    +    +++     + +   +   LG             
Sbjct: 259 LPSREEFELQLANL---ANESGSKELNIVMTLRPNFSEKCLLEQQLG----------FAD 305

Query: 598 RIGELLKFPDILARLSGNRFGIILISEN----NSLKIADFAIA-MRKSIAMPINLLEREI 652
            I        I  +LS + F + L + +    + L++   A+      +   +       
Sbjct: 306 FIMRSRY-TSIAGQLSRDVFVVCLQTPHCQWLSPLRLIQIAMKGFFTELRNEMGTKMHTT 364

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKED 710
            V    G +          + L +A  AM  +     G  +  +  + S    R  ++  
Sbjct: 365 IVEGQTGVSILGYDTNRPKQALAHAAQAMLSSLSGEGGYFNFYNSELHSELVKRQHLEAF 424

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   +++  + + + PII     ++V  EAL ++ H      S+ E + + E+L +I A+
Sbjct: 425 LEAQIDSGLVDVHFQPIIDSRTGKVVKFEALARFYHESD-AYSTQEMITVIEDLELIAAL 483

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQALISKTLYSPSRIK 829
           +  + +   +     +D      I + IN +    L   ++ +    LI  +   P R+ 
Sbjct: 484 DDEVCQAALKHFPRLQDIYGEE-IGLTINRSLNTKLDSLQVLQRSHDLIKASGVDPKRVT 542

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E+      E     L ++RK GI + +DDFGT  S  SYL    FD +K +   + 
Sbjct: 543 IELTETAYFEQDEEHTQALEQVRKEGIKIAIDDFGTGYSSFSYLEKGQFDLLKIDRKFVK 602

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                  +  I++ +  +A+ +   ++A+ +  E +++ L  +G DY+Q    +     +
Sbjct: 603 NIQHGNTSYNIVKMVTDLAQQMNVKVVAEGVESEQELQTLAEIGVDYMQGFLFSRARPVD 662


>gi|153869997|ref|ZP_01999488.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
 gi|152073537|gb|EDN70512.1| diguanylate cyclase/phosphodiesterase [Beggiatoa sp. PS]
          Length = 604

 Score =  271 bits (693), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 7/298 (2%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
               E   LA      + + +   D     +   P   TI G     + G     L   H
Sbjct: 308 RQAEENLRLAATVFETTTEAILVTDANNHIIIVNPAFTTITGYTFDEVVGKQPKILSSGH 367

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
            +D + ++ +  S +    G+ Q E   R  + + +   I I  + ++N  I++Y+ +  
Sbjct: 368 -HDAEFYQQMWTSLLQE--GKWQGEIWNRRKNGEIYVEWISITTIRDANHQIVQYVAVFT 424

Query: 518 DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
           DIT++K++ E IL  A  D LT +PNR  F+DRL   L  +      R  VM ID+D++K
Sbjct: 425 DITKRKQNEELILHQAHHDALTNLPNRILFVDRLKQALLTAKRHQG-RVAVMFIDLDRFK 483

Query: 578 KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            +ND LG   GD +L  + +R+   ++  D +ARL G+ F ++L    N   I   A  M
Sbjct: 484 SVNDTLGHDFGDLLLKEVAQRLIACIRESDTVARLGGDEFTVVLTQIQNISDIRIIAQRM 543

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            KS++ P    + E  +  SIG A +      +  ++K A++AMY AK  G N    +
Sbjct: 544 LKSLSQPFIQKDNEAFIGGSIGIAFFPKDGQEAETLVKKADIAMYQAKQEGRNTSRFY 601



 Score = 63.4 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
           + +         +  + +  +  +  +G +V   D     V      +T+ G     +  
Sbjct: 54  RDITERKQAEDALKHERDFTNAVINTAGSLVIVLDRWGHIVRFNNTCSTLTGYTLEEVKN 113

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
               W   +  +  ++ +    + V       +YE      D     +      ++N + 
Sbjct: 114 RYI-WNFLLTDDKIESCKQYFKNLVVEISTSQRYEIEWVMKDKTRRLIDWSHTILTNEHH 172

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
           ++   IG   DITE+K++ E     A    LT +
Sbjct: 173 EVDYVIGTGIDITERKRADE---TLART--LTEL 201



 Score = 56.1 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 100/388 (25%), Gaps = 55/388 (14%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 + +        + +  S   +      +  +     +  + G     +      
Sbjct: 186 ERKRADETLARTLTELEIILDNSPVGIAFLGQKQRFIRINRKLEKMCGYTEQELRNHTPK 245

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            L Y              +F        + E  VR  D    W  ++++ + + N     
Sbjct: 246 IL-YFSP-------KGYKTFGNDNSATHEMEQFVRRKDGTSFWCHVKVKEI-DPNDPAQG 296

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           +I    D+TE++++ E +   A             F      IL   A +  +       
Sbjct: 297 FIWSLEDVTEKRQAEENLRLAAT-----------VFETTTEAILVTDANNHIIIVNPAFT 345

Query: 572 DIDK--YKKINDVL------GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            I    + ++          G    +      T  + E     +I  R       +  IS
Sbjct: 346 TITGYTFDEVVGKQPKILSSGHHDAEFYQQMWTSLLQEGKWQGEIWNRRKNGEIYVEWIS 405

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML--KNAELAM 681
                        + + +A+  ++ +R+      +  A   +     + +L     + A+
Sbjct: 406 ITTIRDA---NHQIVQYVAVFTDITKRKQNEELILHQAHHDALTNLPNRILFVDRLKQAL 462

Query: 682 YHAKHRGGNHVESFRVSSF-----------------RSDRVMIKEDLCLAVE-----NSE 719
             AK   G     F                      +     +   +  +         E
Sbjct: 463 LTAKRHQGRVAVMFIDLDRFKSVNDTLGHDFGDLLLKEVAQRLIACIRESDTVARLGGDE 522

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHP 747
             +V   I  + D  I+    L     P
Sbjct: 523 FTVVLTQIQNISDIRIIAQRMLKSLSQP 550



 Score = 38.4 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           R    ++Q  W    + P+   +G I R   ++ DITE+K++ +
Sbjct: 21  RFEDEESQGLWFEHSVYPVFEKSGTINRIAIVSRDITERKQAED 64


>gi|299770764|ref|YP_003732790.1| hypothetical protein AOLE_12650 [Acinetobacter sp. DR1]
 gi|298700852|gb|ADI91417.1| hypothetical protein AOLE_12650 [Acinetobacter sp. DR1]
          Length = 452

 Score =  271 bits (693), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 121/266 (45%), Gaps = 3/266 (1%)

Query: 691 HVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            +  + +         + +DL LA+   +  L Y P I    E ++G EAL++W HP  G
Sbjct: 184 CISIYTMQLEIQIENSMVKDLRLALAKQQFELFYQPQIN-SSETLIGAEALLRWHHPTLG 242

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            + + +F+  AE   ++  I  ++L +  + +  W  +A    + + INI++   +    
Sbjct: 243 YVPTKDFIPAAETFGLMPEIGEWVLAQGCKVLQDWSKKAETKDLTLSINISADHFMQATF 302

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            + +  ++ K   +PSR+ L  +E++ + N       +  L K GI L+LDDFGT  S L
Sbjct: 303 EQTVIGMVQKYQINPSRLILEITENIALNNCVSMIEKMHFLSKNGIQLSLDDFGTGYSSL 362

Query: 871 SYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL  +P   +K + S +  + + + +  ++  II +  ++   ++ + I          
Sbjct: 363 SYLQKMPISQIKIDRSFVQAALDDKRSNKLVTGIIKIGLDLNLRVLVEGIETTEQFSAFK 422

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLK 954
             GC   Q      P+  N  LK + 
Sbjct: 423 NNGCTEFQGYLWGCPMPLNDFLKQIA 448


>gi|158314117|ref|YP_001506625.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
 gi|158109522|gb|ABW11719.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EAN1pec]
          Length = 696

 Score =  271 bits (693), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 175/434 (40%), Gaps = 27/434 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTIL---------------DLSATDDNLRPTVMVIDIDKYKKIN 580
           D LTG   R +  + L   +                 ++        ++++D+D    +N
Sbjct: 253 DPLTGFATRYAMAEELDGRIAAAATAAAGAGTAVEAETSGPAGPPGCLLLLDVDHLADVN 312

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G   GD VL  L   +   L    +L RL G+ F ++L +      +A         
Sbjct: 313 DLQGHTAGDAVLRGLAHSLRAEL-PEAMLGRLGGDEFAVLLPTGGGGEGLAVAERLCAAL 371

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
              P+   E     T SIG      +  +       A+LA+  AK  G N    F    +
Sbjct: 372 ATRPVAPGELPARATVSIGVVPLDLAAGS-EAAFAWADLALREAKRAGRNRARLFTREQY 430

Query: 701 RSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               + +     +  A+++ ++ L   P++ L   E+VG E L +     W  +    F+
Sbjct: 431 DEAALRVTVTSRVAAALDSGQMSLDVLPLVDLASREVVGFELLSRLRDGVWPELGPRGFL 490

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE   +   ++ +++ R    ++S        P  + +N+A++ L D    + + + +
Sbjct: 491 AAAEHTDLGLHLDRWVVLRAVNALVS------GVPGRLYVNLAARSLHDPAFGDFVLSTL 544

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 PSR+ L  SES  + +P+ +R L  +L   G  + LDDFG +   +  L  +P 
Sbjct: 545 RDGRVDPSRLGLEISESAAVASPDAARRLAEQLGAAGCPVLLDDFGMQTGAVVALRNLPL 604

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             VK + +++  +    +  +++ +++ +A+     +IA+ +      + L  +G    Q
Sbjct: 605 WAVKIDANVVRNADANPRDRSLVEAVVQIARTAGMLVIAEGVDRASLPQVLLDLGVGLAQ 664

Query: 937 DSHVASPLGFNSIL 950
             HV  P     +L
Sbjct: 665 GYHVGRPRRLTELL 678


>gi|315299477|gb|EFU58728.1| PAS domain S-box [Escherichia coli MS 16-3]
          Length = 1105

 Score =  271 bits (693), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 200/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND+ G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDIAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAISLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPADAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQVTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 86.9 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQVTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|325680091|ref|ZP_08159658.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
 gi|324108254|gb|EGC02503.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
          Length = 510

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 119/252 (47%), Gaps = 4/252 (1%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +      A++N  +   Y P+ R +  ++ G EAL +W  P++G I   EF+ + E+ 
Sbjct: 1   MELISKFDEALKNGYIKAFYQPLTRTVTGKVCGAEALARWLDPEFGLIPPGEFIGLLEQH 60

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  ++L M+E + R    +    +   +   +N++  D    ++   +  ++ +    
Sbjct: 61  GLIHRLDLAMIENVCRFYKKY----DCRDMTFSVNLSRIDFKQTDMFSAITDIMKRYDVP 116

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            S I    +ES ++ + E +R L  +    G  + LDDFG+  S LS L    F+ +K +
Sbjct: 117 VSAIHFEITESTMLADIENTRRLSKQFFDAGFEIWLDDFGSGYSSLSLLRDFRFNVLKMD 176

Query: 885 GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            SL+     +   I+ S++ M+K +    +++ +  E  +  L  +GC+ IQ  + + PL
Sbjct: 177 MSLLKQFDVRSRKIVSSVVNMSKALGIHTLSEGVETEEQLVFLRNIGCEMIQGYYFSRPL 236

Query: 945 GFNSILKLLKER 956
                L  LKE 
Sbjct: 237 CEEDFLAYLKEH 248


>gi|315617434|gb|EFU98040.1| EAL domain protein [Escherichia coli 3431]
          Length = 457

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 194 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 253

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 254 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 311

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 312 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 370

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 371 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 430

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 431 FFAKAMPPQVFMQWMEQ 447


>gi|289677140|ref|ZP_06498030.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 321

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 118/294 (40%), Gaps = 10/294 (3%)

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS----FRSDRVMIKEDLCLAV 715
                 +  +    L  A++A Y AK RG N V+++ V       R   +   + L +A+
Sbjct: 1   MVHLGDTPASLEGSLSAADMACYMAKERGRNRVQAYSVDDLTLSMRFGEMAWIQRLHMAM 60

Query: 716 ENSELYLVYHPIIRLMD--EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           + +   L    I  +     E+  +E L++        +    F+  AE   ++  ++ +
Sbjct: 61  DENRFCLYAQEIASIKGEAGEVRHIEILLRLRDESGRMVVPDNFIPAAERYGLMTTLDRW 120

Query: 774 MLERIARDIISWRDQANM--PPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           ++  + + I   +       P     IN++   + D+   E ++        SP  I   
Sbjct: 121 VVHNVFKVIAQCQSDDRHQVPQALCAINLSGSSIGDDTFLEYLKEQFETFAVSPGMICFE 180

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +E+  + + + +   +  L+ +G   +LDDF +  S  +YL ++P D +K +GS +   
Sbjct: 181 ITETSAIADLQSAIRFINELKGLGCQFSLDDFCSGMSSFAYLKHLPVDFLKIDGSFVKDM 240

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                  A++  I  +   +    IA+ +        L  MG D+ Q   ++ P
Sbjct: 241 LDNPINKAMVEVINNIGHVMGKRTIAEYVETPQIEAALQEMGVDFAQGYLISRP 294


>gi|254459358|ref|ZP_05072779.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
 gi|207083971|gb|EDZ61262.1| diguanylate cyclase/phosphodiesterase [Campylobacterales bacterium
           GD 1]
          Length = 577

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 195/445 (43%), Gaps = 39/445 (8%)

Query: 517 NDITEQKKSLEGILC---NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI-D 572
            +I  +K   E         ++D+LTG+ N       L   +  +    +L  TV+++ D
Sbjct: 152 QNIELEKSLEEKSQIINTQIYRDSLTGLDN-------LCAFMYNTNNHKHLEFTVLMLLD 204

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGII--LISENNSLK 629
           +D  + IND+ G   G+ VL+S ++ I E  +     L   SG++F ++  +   +    
Sbjct: 205 VDNLQHINDLYGTKTGNQVLISFSKLIKEFSEEYYYELYHTSGDQFVLLDQVAYIDTEKY 264

Query: 630 IADFAIAMRKSIAMPINLLE--REITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +F I + +       + +  +EI+V A+IG +            LK+A++A+ +AK  
Sbjct: 265 EIEFDILLNRIKEFTFFIDDFKKEISVNATIGMSLGLEHP------LKHADMALKNAKDN 318

Query: 688 GGNHVESF---RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
              +         +    +++  +  +  A+EN+ +  VY PI+   D  ++  E+L++ 
Sbjct: 319 NKTYAVYNTLIDTTKEMQEKMEWRHKITDALENNRIVPVYQPIVD-RDANVIKYESLMRI 377

Query: 745 ---DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
                 +   IS  +F+ I+ E      I+  M+ ++   + +           I IN+ 
Sbjct: 378 LEIVDNQEILISPDKFLKISLETKQYSLISAMMIYKVLDFLQTNEH-------TISINLT 430

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D+ +    E +   ISK     +R+ +  +E+  + + +  +  + R R +G+ + +D
Sbjct: 431 YSDITNKSFMESLYKRISKENL-GNRLIVEITENESVQDYKLLKKSIERFRSLGVKIAID 489

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIY 919
           DFG+  S  S +  I  + +K +G+L+        A +  ++I+     +   +IA+ ++
Sbjct: 490 DFGSGYSNFSQILEIHPEYIKIDGTLIENIDIDSHAFILTKAIVTFFNELGIKVIAEYVH 549

Query: 920 GEIDIKELTRMGCDYIQDSHVASPL 944
            E   + L     D  Q  + + PL
Sbjct: 550 SEKIHEILQEFNIDEFQGYYFSEPL 574


>gi|157144675|ref|YP_001451994.1| hypothetical protein CKO_00401 [Citrobacter koseri ATCC BAA-895]
 gi|157081880|gb|ABV11558.1| hypothetical protein CKO_00401 [Citrobacter koseri ATCC BAA-895]
          Length = 732

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 159/431 (36%), Gaps = 22/431 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L               TV  + ++  + ++   
Sbjct: 317 WLNRQWHGQALTDPLTRLPNIRALEQFLLQ---------GTGQTVCCLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +      S+ R +   L+  + + ++ G+   ++L       ++      +    + 
Sbjct: 368 GMLMRVHCKRSVCRMLQPFLQENESVFQVPGSELLLVLRGPETEARLQHMVNLLN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH---VESFRVSSF 700
            I      + +     + ++   + T   +L         +               VS  
Sbjct: 425 KIYWNNTGLDMEYGAAWGAYDGRQETLQPLLGQLSWLSEQSCANHRVMALTQSLEAVSDQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++RV++ + +  A+EN +L L   PI+    +   G   ++       G ++  +F+ +
Sbjct: 485 TTERVLLLQKVRKALENGDLVLYAQPILNAQGK---GYAEVLARLKSDDGIMTPDQFIPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L ++E + R I +       P     +N+    LL+ E    +  L  +
Sbjct: 542 IAQFNLSARFDLQVVEALLRWIATHP--TTEPGARFSVNLMPLTLLNKESASRIICLFRR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              +P  + +  +E     N E S   + +LR  G  + +DDFGT  +    L  +  D 
Sbjct: 600 YGITPESVIIEITEEQAFSNSEISTQNIAQLRNFGFRIAIDDFGTGYANYERLKRLRADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I++SI  +AK     ++A+ +      + L  +G +Y+Q  
Sbjct: 660 IKIDGCFIKDIMTDSLDAMIVKSITDLAKAKSLCVVAEFVETPEQRELLLSLGVNYLQGY 719

Query: 939 HVASPLGFNSI 949
            +  P    ++
Sbjct: 720 LIGRPRPLEAL 730


>gi|167748668|ref|ZP_02420795.1| hypothetical protein ANACAC_03442 [Anaerostipes caccae DSM 14662]
 gi|167651982|gb|EDR96111.1| hypothetical protein ANACAC_03442 [Anaerostipes caccae DSM 14662]
          Length = 504

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 142/344 (41%), Gaps = 17/344 (4%)

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R  G  + ++    +     +  +   R++        E    +  SIG A W + + 
Sbjct: 163 VVRTGGAEYVVLCPEISREEFHSRVSALRRET--------EHNEELNISIG-AVWDAGRR 213

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              E +  AE  MY  K        +   +   +    +  D+    E     +   P +
Sbjct: 214 GVKEQVSYAEDLMYIEKQSYYKKTLNAEYNRRSAVAKKLLRDI----EQGRFVVHLQPKV 269

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            +    I+G EAL++        I    F+ I E   +I  ++L++LE + R +  W +Q
Sbjct: 270 EIETGRIIGAEALVRKIQKDGSLIMPDAFIPIYELENVICHVDLYVLEEVCRILRQW-EQ 328

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                + I +N++   L++ ++   +  +  K    PS+I +  +ES      E      
Sbjct: 329 TGSDSLTISVNLSRVTLMEKDIANRILNVCRKYDVDPSQICIEITESSSKIRLEELSRKA 388

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMA 906
                 G  ++LDD+GTK S L+ L  I F+ +K + SL+ G    EK   ++R +I M 
Sbjct: 389 EEFIGAGFKISLDDYGTKYSNLAILSAIDFNEIKLDKSLIDGLEKNEKSQVLVRYVIQMC 448

Query: 907 KNIETTI-IAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           + +   I IA+ I  E  I  L  +GCD+ Q  + + P+     
Sbjct: 449 RTLNQMIPIAEGIETEGQINILKNLGCDFGQGYYFSKPISVKDF 492


>gi|119945756|ref|YP_943436.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [Psychromonas ingrahamii 37]
 gi|119864360|gb|ABM03837.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Psychromonas ingrahamii 37]
          Length = 903

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/518 (18%), Positives = 201/518 (38%), Gaps = 16/518 (3%)

Query: 406 RQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
           R  +A      S + +   D     ++       + G +   +       +  +     D
Sbjct: 346 RFEIADAVFENSKESLIVTDEDGRIISANDHACIVFGYSKEQLLAQE---INILASETHD 402

Query: 463 -NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
             +   ++  +    G  Q +   R          +    + ++  + +  +    D+T 
Sbjct: 403 GAYYKNIEQLLEAD-GSWQGDITYRTKIGDVCHAWLEAYEVQHTQENRVERVYSYTDLTH 461

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
            + + + I   + QD LTG+ NR S   RL   L  +    +    V+++DID +K IN+
Sbjct: 462 FQVTDKKISFLSKQDPLTGLHNRISLFSRLEDRLTRAN-YQHSAVAVILVDIDDFKAINN 520

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
             G   G+ +L  + RR+   L     L R   ++F II+    +    A  A  +    
Sbjct: 521 KYGHNGGNQILKEVARRLKNCLYGKYTLGRFVKDQFIIIIDELASEHDAATVARQVTDQF 580

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
           +    +      +TASIG +      I  + +  NAE A  H+K+        +      
Sbjct: 581 SSAFIIENVHKNITASIGISLSPDDGIEVAPLFLNAEKAKRHSKNSKSTVYNFYTPGLTL 640

Query: 701 -RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             +    ++++L  A+ + +L L Y P   L   +IV L+ L++W HPK G +    F+ 
Sbjct: 641 GLNKEFELEKELKQALLSDQLDLYYQPQYDLSKRQIVALQGLLRWHHPKRGILLPEHFLS 700

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   ++  I   M+ +     +SW +        I I++    L        +Q ++ 
Sbjct: 701 VAEGSHLLVPIGWKMIRKACLKAVSWENAQFKFG-RIAIDLFKIQLSQISFIAELQTILK 759

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +T  S  +++    ++++          L    K+G +LT+ +FG    ++  +  +   
Sbjct: 760 ETGCSTGQLEFLVDKAILCDASADILSNLDNANKMGFTLTVTNFGMAEDVIDLIDRLGVA 819

Query: 880 TVKF-NGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
            +K  +   +  ++      A L+S    A ++   I+
Sbjct: 820 NLKISDPQ-IKNASGSLANNAQLKSANVFASSLGINIL 856


>gi|90023579|ref|YP_529406.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953179|gb|ABD83194.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 588

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 98/677 (14%), Positives = 205/677 (30%), Gaps = 106/677 (15%)

Query: 31  AIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA-DIDGISRRIEVSASSIRHRGDWA 89
           A+  +   +  +++ +        ++             D   +     +        W 
Sbjct: 8   AVAQVKTPADGKLV-IQQGLAFLEDKSGALSFEDVQTRGDWQLQASGNFSQGYNRSAWWL 66

Query: 90  VFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVF 149
            F L NT  + +  L+ V +  L     +  +            +     R     + + 
Sbjct: 67  KFELLNTQQANI-WLLEVAYPILDYVTVYVGNPQGVYTKVEMGDKLPFDSRPIKHRNFLV 125

Query: 150 RITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLT 207
            + +     VT  + +++ +     + LWEP  + +  ++  L  G + G   ++A++  
Sbjct: 126 PLDLTKREPVTIYIRVASSSSVQFPLVLWEPKRFSEFHSNEYLLHGFLFGGLFVIALYNF 185

Query: 208 IFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSLI 266
           + + V R    I   A    +  + +   G   +      +    I    S   L     
Sbjct: 186 LVFTVLRQRAYIYYVAYITCLTAFAASLSGLSFRYLWPNATLWNDISILFSLAGLVLFAS 245

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           IF +++L                            +         +     + L      
Sbjct: 246 IFCWVFLDVKT------------------------FRQKFVIYCFQFYFVVLPLLIVGVF 281

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT-KRLDNDIIQPALVGGLVLIVILIGFT 385
           I+            I   +LI    +   +      +     +P+     V   +     
Sbjct: 282 IF---------PYYIMIKLLILFGVLACGLGFAAGIIAWLEGRPSAKYYTVAWALFYSGG 332

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  +       Q IFS+                      + +     I  +L       
Sbjct: 333 IVLALTKLAIIEQTIFSE----------------------NALQFGSLIEAVL------- 363

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                     ++I           ++    + +++ E RV                    
Sbjct: 364 --LSFALAERMNIERALRLDAQKRAYDIEYQAKIELEKRVIDRT---------------- 405

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
                          E + + E +   +  D LTG+ NR+     L      S    + R
Sbjct: 406 --------------EELELANEKLRELSDTDQLTGLKNRRFLNHYLEDEFARSCRYGH-R 450

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTR-RIGELLKFPDILARLSGNRFGIILISE 624
            +++++DIDK+K IND  G  VGD  + ++ +  +    +  D++AR  G  F I+L  E
Sbjct: 451 MSILLVDIDKFKHINDNYGHTVGDTCIQAIAKVLLESNRQPSDLVARYGGEEFCIVLP-E 509

Query: 625 NNSLKIADFAIAMRKSIA-MPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMY 682
            +       A  +   +   PI      I VT SIG  +   +S       + NA+ A+Y
Sbjct: 510 TDVEGALHVANRLLDMVRNTPIYAAANTINVTCSIGCYTAVPNSTKQIIAFIDNADTALY 569

Query: 683 HAKHRGGNHVESFRVSS 699
            AK  G + V  ++  +
Sbjct: 570 EAKKTGRDKVVVYKDDN 586


>gi|254244153|ref|ZP_04937475.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197531|gb|EAZ61594.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 691

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/543 (17%), Positives = 203/543 (37%), Gaps = 14/543 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNF 464
           R  L +  S D +  +      +        + G   +  + G     +  I   D+  F
Sbjct: 145 RCQLLLDSSVDAI-TYVHDGMHIYANRSYMALFGYEDAEELEGLP--VIDLIASCDQGAF 201

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L  +   +R   +        D Q     I +   +  +G+    + I  ++ +  +
Sbjct: 202 KDFLKGYQNDQRQT-ELVCTGVKLDGQEFKARISLSA-ATYDGEPCIQVVIRGEV-DNAE 258

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   + QD +TG+ NR  FLD +   +  + T      T+  I ++ Y  +    G
Sbjct: 259 LEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPS-TLAYIHLNGYPSLQADHG 317

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           ++  D +L  L   + E       LAR   + F  +   +      A     ++K     
Sbjct: 318 LSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHL 377

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  R    T SIG A        + +++  A      A  +GG+ ++ +  +   +  
Sbjct: 378 FELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQIKQYNPAEELAAA 437

Query: 705 VM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A+E +   L++ P+I L  +     E L++  +P+   +  +EF+  A
Sbjct: 438 AQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAA 497

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E  + + I+ +++    + +   R + +   +F+   ++S  L D  L   +   +   
Sbjct: 498 KEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVH--LSSASLQDPGLLPWLGVALKAA 555

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +    SE+      ++++ L   L  +     +  FG   +  + L ++    +
Sbjct: 556 RLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFI 615

Query: 882 KFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +GS +    + +   IL+ +I      +   I   +     +  L + G  YIQ  ++
Sbjct: 616 KIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYL 675

Query: 941 ASP 943
             P
Sbjct: 676 QGP 678


>gi|156975050|ref|YP_001445957.1| hypothetical protein VIBHAR_02776 [Vibrio harveyi ATCC BAA-1116]
 gi|156526644|gb|ABU71730.1| hypothetical protein VIBHAR_02776 [Vibrio harveyi ATCC BAA-1116]
          Length = 814

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/586 (17%), Positives = 208/586 (35%), Gaps = 60/586 (10%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGS 444
           H++      Q   +  E  +  +    D     +   D     +         +G  +  
Sbjct: 104 HIVQGTVIPQLTITGSEELAKILESIFDLPNVGILIADQETRILGCNRAFEQQMGYENRD 163

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           + G   N     H     + +   D       + G        R +        + I  +
Sbjct: 164 IIGLKTNIFSSDH-----HSQAFYDDMWEQIDQAGYWSGNLLSRTSKGSHQAHHLCIYRL 218

Query: 503 SNSNGDILRYIGIANDITE----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + S+G  L Y+G++ DI+      KK+ E     +       +P R  F  +L  ++   
Sbjct: 219 NFSSGRTL-YLGVSTDISASLLWMKKAGEQTQQYSAF-----LPPRHEFETQLGNLVRE- 271

Query: 559 ATDDNLRPTVMVIDIDKYKK---INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
              +     VM +   ++ +   +   LG              +        I  +LS +
Sbjct: 272 -NSNKDLNIVMALR-PRFSEKTALEQQLG----------FADFLMRSRHAS-IAGQLSKD 318

Query: 616 RFGIILISEN----NSLKIADFAIA-MRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
            F + L +      + L++   A+      +   +     ++ +    G +         
Sbjct: 319 VFAVCLQTPRCQWLSPLRLIQIALRGFFVELRSELGSSMHDVIIEGQTGVSVLGYDTGNP 378

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPII 728
              L +A  AM  ++    N+   +             ++  L   +E   + + Y PII
Sbjct: 379 KHALVHAAQAMISSRSDDQNYFSFYNSELHDELVKRSHLEALLRAQIECQFVDVFYQPII 438

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                ++V  EAL ++ H       + E + + E+L +I A++  +  +  + +   +  
Sbjct: 439 ETCSGKVVKFEALARFYHQNKTY-DTQEMIAMVEDLELIAALDDVVCRKALKQLTHIQKI 497

Query: 789 ANMPPIFILIN------IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
                + + IN      + +  +L + L      LIS++   PSRI +  +E+      +
Sbjct: 498 YG-EDVGLTINRSLNTKLDALQVLQSSL-----DLISESGVDPSRITIELTETAYFEQDQ 551

Query: 843 RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILR 900
              + L  LR  GI + +DDFGT  S  SYL    FD +K +   +    E      I++
Sbjct: 552 EHTVALEELRGQGIKIAIDDFGTGYSSFSYLEKGHFDQIKIDRKFVKNIKEGSTKFHIVK 611

Query: 901 SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +  +A  +   ++A+ +  E ++K L  +G DY+Q    +  +  
Sbjct: 612 MMTELAHKLNVKVVAEGVESEQELKVLANVGVDYMQGYLFSQAVPL 657


>gi|161502344|ref|YP_001569456.1| hypothetical protein SARI_00377 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863691|gb|ABX20314.1| hypothetical protein SARI_00377 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 737

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 179/447 (40%), Gaps = 24/447 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+         A+ D +  +PN ++    L               T+
Sbjct: 308 IVNYMAVLA--TRQRVVSSRARRLAYLDPVVHLPNLRALNRALKNA---------PCSTL 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    G+ +       L+  I ++L   + + ++SG+   + L +E+   
Sbjct: 357 CFLHVPGLELLGKNYGVMLRIQYKQKLSHWITQMLASNECVYQMSGHDLVLRLNTESYQQ 416

Query: 629 KIADFAIAMRKSIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHA 684
           +I      +++            +   V  S        S +     E+  +++L++   
Sbjct: 417 RIEALDKHIKQF---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELGTSSDLSLTTN 473

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  +      RV +   L  A+E+   +L+  PI  +  +  V  E L++ 
Sbjct: 474 APEDLQRRGAVHLQRDLKGRVAMMNRLQQALEHDHFFLMAQPISGVRGD--VYHEILLRL 531

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I+   F+ +A E  +  AI+L+++E   R I + R+          +N++   
Sbjct: 532 RDENGDVINPDNFLPVAHEFGLSSAIDLWVIENTLRFIATSREYMPAH--RFAVNLSPTS 589

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        +  L+++    P ++    +ES  + N ++++L LG+L++ G  + +DDFG
Sbjct: 590 VCRAPFPSEVNQLLTQYQVEPWQLVFEVTESNSLTNADQAQLTLGQLQQFGCQIAIDDFG 649

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E 
Sbjct: 650 TGYASYARLKNVNADILKIDGSFIRNIVSNSLDYQIVSSICHLARMKKMQVVAEYVESEE 709

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
               +  +G DY+Q   +  P   + I
Sbjct: 710 IRSAVLSLGIDYLQGYLIGEPQPLSEI 736


>gi|260598557|ref|YP_003211128.1| putative diguanylate cyclase [Cronobacter turicensis z3032]
 gi|260217734|emb|CBA32134.1| Uncharacterized protein yegE [Cronobacter turicensis z3032]
          Length = 1095

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 106/554 (19%), Positives = 220/554 (39%), Gaps = 13/554 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   DI  +     P    + G       G    
Sbjct: 526  EVKQLNEALFQEKERLHITLDSIGEAVICTDIDMNVTFMNPVAEKMSGWRQEEAIGQPIL 585

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGR-LQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
             +  I   D       + +    + G  ++ +  +       + +   I P+S   G+ +
Sbjct: 586  AILRITFGDNGPLLNDIHNGEATQAGTGIEQDVVLHCRSGGNYDIHYTITPLSTLEGENI 645

Query: 511  RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
              + + +D+TE +K L  +  +A  D LT + NR SF   L  +L  S +D++ R  ++ 
Sbjct: 646  GSVLVIHDVTESRKMLRQLSYSASHDALTHLANRVSFETHLKRLL-QSVSDNHQRHALVY 704

Query: 571  IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
            ID+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L    +    
Sbjct: 705  IDLDRFKAVNDSAGHAAGDALLRELASLMLGMLRTTDVLARLGGDEFGLLLPDC-SLENA 763

Query: 631  ADFAIAMRKSIAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
                  +  +I   P     R   + AS G     ++   + E++  A++A Y +K+ G 
Sbjct: 764  RTICERIVAAINEYPFVWESRLHRIGASAGITLIEATNNQAQEVMSQADIACYTSKNAGR 823

Query: 690  NHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL-IQWD 745
              V  +     +          ++    +      L+  P+      E      L ++  
Sbjct: 824  GVVTVYEPHQQQLHNGRGTLTAQEQQRMISEHHHVLMVRPVASPRVPESASFWLLSLRLW 883

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
              +   I    F     +  +I+A++  M+    RD  +   +     + + + ++   L
Sbjct: 884  TSEGEMIEERSFRAGLTDPELIQALDTRMMTDFFRDHAANVARKG---VGVALTLSGATL 940

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
            L+ +  + + A ++ +   P  + L  +  V+M +   +R  L RLR+ G  + L   G 
Sbjct: 941  LNAQRLDALLAQLAASPLPPRLLHLIINSEVLMQDAATARRHLARLREAGCRVVLSHIGR 1000

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
            +  +  +      D +     L+T +        +L  ++  A+ +    IA     +  
Sbjct: 1001 ELEVFEHFSAACADYIMVASDLVTDAHASLMDEMLLTIVMGNARRLGLQTIAGPADQQSL 1060

Query: 924  IKELTRMGCDYIQD 937
            ++ L  +G D +  
Sbjct: 1061 LETLANVGIDLVYG 1074



 Score =  102 bits (254), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/370 (10%), Positives = 114/370 (30%), Gaps = 19/370 (5%)

Query: 166 STPNLPQIYLWEPNFYKDTVNSFTLYRGIIIGVAS--LLAIFLTIFYMVNRSSMLIPTFA 223
           +   L  + L+     + +  +  +   ++  +    LL  +  +  + N   +   +  
Sbjct: 58  AGTVLASLTLFPAAHLEISYTAINIVEALVGAILLRKLLPWYNPLKNLSNWIRLAFASAV 117

Query: 224 MAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVG 283
           +  +V   +      +   + L    +L     +   +   L+ F   YL       ++ 
Sbjct: 118 VPPLVGALLLTAISDVHITLRLALVWILSETIGALALVPLGLL-FKARYL-LRHRSPRLL 175

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
             + + +    +   ++ +Y                 +    +++  ++        +  
Sbjct: 176 AESLATLCVTLLCSWLALHYMPW-----------PFTFVIVLLMWSAIRLPRLEAFTVFL 224

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
             ++ + F+         L ++ +       L  ++IL+   V+  V+      + + ++
Sbjct: 225 ATVMMVSFVIATNPTLIDLPHEGVV-VNAPWLPFLMILLPANVMTMVMYASREERKLITE 283

Query: 404 GE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
            E R   A+  S   +         +     + T LG     +     ++    +  D  
Sbjct: 284 SETRFRNAMEYSAIGMALVSTEGAFLQVNKALCTFLGYTPEQLAN--MSFQQMTYPEDLH 341

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
                ++  +         E R         W ++ +  +   +G  L +I    DIT+ 
Sbjct: 342 ADMAQVEKLLNGEMNNYSMEKRYYTRAGDVVWALLAVSIVRQRDGSPLYFIAQVEDITDL 401

Query: 523 KKSLEGILCN 532
           K++       
Sbjct: 402 KRTEWVNKRL 411



 Score = 81.2 bits (199), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            ER +LA    G  +W+W++  D +     +  +  +   +     + W   +   D   
Sbjct: 412 MERITLANEAGGIGIWEWELGTDVLAWDQRMFELYEVPPHT-RPTYQLWKSRLLKEDVAQ 470

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               +   +  R    + E+R++  +     +      + N  G++ R +G+  D+TE K
Sbjct: 471 AEATIQEALRAR-VPFKMEYRIQVKNG-VRHIRALANRVLNKQGEVERLLGVNMDMTEVK 528

Query: 524 KSLE 527
           +  E
Sbjct: 529 QLNE 532


>gi|254236729|ref|ZP_04930052.1| hypothetical protein PACG_02739 [Pseudomonas aeruginosa C3719]
 gi|126168660|gb|EAZ54171.1| hypothetical protein PACG_02739 [Pseudomonas aeruginosa C3719]
          Length = 523

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 3/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 263 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++A D+         P   I  NI++    D  L +  + L++        +
Sbjct: 323 PMTRALMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHDLALVDDCRELLAAFPPGHITL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFV 441

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 442 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 501

Query: 947 NSILKLLK 954
            S+L  L 
Sbjct: 502 ESLLSSLA 509


>gi|17549429|ref|NP_522769.1| hypothetical protein RS03152 [Ralstonia solanacearum GMI1000]
 gi|17431682|emb|CAD18359.1| probable signal transduction protein eal-ggdef domains [Ralstonia
           solanacearum GMI1000]
          Length = 449

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 169/427 (39%), Gaps = 28/427 (6%)

Query: 548 LDRLTTILDLSATD--DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
            +R   +L  +           +++I  D + +    LG     +V+V    R+  L   
Sbjct: 4   RERFVQLLARTPHPVPSGGVGALLLIGFDHFAEAAASLGPLAARNVMVECASRLQALCPQ 63

Query: 606 PD-----ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
                  ++ R+    F +   +  ++  + D A  +  S+  P      E+  + SIG 
Sbjct: 64  AVDGAAPVVGRIGPETFAVASAAFASAQAVHDLARRISASLTRPFITAGYELVCSCSIGM 123

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-------------MI 707
             +      ++ +++ A+ A++H +H G      +  ++                    +
Sbjct: 124 TMFDGPPADAARLIEQADRALFHVQHGGEQSPAMYAPAATAGAPGIAADTNDPVSEHPRL 183

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   +  L   P + L++ +IVG E L++W  P+ G ++ ++F+ I E+   I
Sbjct: 184 AAQLRHALARRQFSLNLQPQLSLVNGQIVGYEFLLRWISPELGGVAPADFLPILEQTGDI 243

Query: 768 KAINLFMLERIARDIISWRDQ-------ANMPPIFILINIASKDLLDNELCEGMQALISK 820
           + +  ++L+  A+ +   + +       A  P +   +N++   LLD +L E ++ + ++
Sbjct: 244 RKVGHWVLDNAAQMLAGLQREEAERAGTARQPDLHAAVNLSDAQLLDPQLSEVVRDIAAR 303

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                +R+    SE  ++     +R  +  L   G  + ++DFG     L  L     D 
Sbjct: 304 HAVPTARLVFEVSEHTLLRAGAAARQAVDALHACGARVAVEDFGATAHSLDCLARFRPDQ 363

Query: 881 VKFNGSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           VK +  ++   +       L+ ++  A +    + A  +     ++ L    CD IQ   
Sbjct: 364 VKLDRGVVGAVSGAGDDTALQRLVAAAHDAGVPVTATRVETAAQLQALRACRCDVIQGYL 423

Query: 940 VASPLGF 946
           ++ P   
Sbjct: 424 LSQPFPA 430


>gi|15600152|ref|NP_253646.1| FimX [Pseudomonas aeruginosa PAO1]
 gi|116053108|ref|YP_793427.1| hypothetical protein PA14_65540 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894054|ref|YP_002442923.1| FimX [Pseudomonas aeruginosa LESB58]
 gi|296391799|ref|ZP_06881274.1| FimX [Pseudomonas aeruginosa PAb1]
 gi|313109963|ref|ZP_07795889.1| hypothetical protein PA39016_002180005 [Pseudomonas aeruginosa
           39016]
 gi|9951240|gb|AAG08344.1|AE004908_10 FimX [Pseudomonas aeruginosa PAO1]
 gi|115588329|gb|ABJ14344.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218774282|emb|CAW30099.1| FimX [Pseudomonas aeruginosa LESB58]
 gi|310882391|gb|EFQ40985.1| hypothetical protein PA39016_002180005 [Pseudomonas aeruginosa
           39016]
          Length = 691

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 94/543 (17%), Positives = 203/543 (37%), Gaps = 14/543 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNF 464
           R  L +  S D +  +      +        + G   +  + G     +  I   D+  F
Sbjct: 145 RCQLLLDSSVDAI-TYVHDGMHIYANRSYMALFGYEDAEELEGLP--VIDLIASCDQGAF 201

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L  +   +R   +        D Q     I +   +  +G+    + I  ++ +  +
Sbjct: 202 KDFLKGYQNDQRQT-ELVCTGVKLDGQEFKARISLSA-ATYDGEPCIQVVIRGEV-DNAE 258

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   + QD +TG+ NR  FLD +   +  + T      T+  I ++ Y  +    G
Sbjct: 259 LEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPS-TLAYIHLNGYPSLQADHG 317

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           ++  D +L  L   + E       LAR   + F  +   +      A     ++K     
Sbjct: 318 LSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHL 377

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  R    T SIG A        + +++  A      A  +GG+ ++ +  +   +  
Sbjct: 378 FELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQIKQYNPAEELAAA 437

Query: 705 VM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A+E +   L++ P+I L  +     E L++  +P+   +  +EF+  A
Sbjct: 438 AQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAA 497

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E  + + I+ +++    + +   R + +   +F+   ++S  L D  L   +   +   
Sbjct: 498 KEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVH--LSSASLQDPGLLPWLGVALKAA 555

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +    SE+      ++++ L   L  +     +  FG   +  + L ++    +
Sbjct: 556 RLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFI 615

Query: 882 KFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +GS +    + +   IL+ +I      +   I   +     +  L + G  YIQ  ++
Sbjct: 616 KIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYL 675

Query: 941 ASP 943
             P
Sbjct: 676 QGP 678


>gi|288917378|ref|ZP_06411745.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
 gi|288351243|gb|EFC85453.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EUN1f]
          Length = 637

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 178/422 (42%), Gaps = 18/422 (4%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+  R +  + L      +        +++++D+D    +ND+ G +VGD VL +
Sbjct: 210 TDPLTGLLTRYAMAEDLE---IRTTGVQTAVGSLLLLDVDHLADVNDLQGYSVGDAVLRA 266

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           +   + E L    +L RL G+ F ++L        +A          A      E  +  
Sbjct: 267 VAGLLREELPADTVLGRLGGDEFAVLLREGGGDEGLAIAERLCAAVAARTAAAEEVAVQA 326

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLC 712
           T SIG      +  +       A+LA+  AK  G N    F    +    + +     + 
Sbjct: 327 TVSIGVVPLELAAGS-EAAFAWADLALREAKRVGRNRARLFTREQYDEAALRVTVTSRVA 385

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N ++ L   P++ L   E++G E L +     W  +    F+  AE   +   ++ 
Sbjct: 386 AALDNGQMSLDVLPVVDLASREVIGFELLSRLRDGIWPELGPRGFLAAAEHTDLGLHLDR 445

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           +++ R    +       +     + +N+A++ L D    + + + +      PSR+ L  
Sbjct: 446 WVVLRAVNAL------LSGLSGRLYVNLAARSLRDPAFGDFVLSTLRDGRVDPSRLGLEI 499

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFG--TKCSLLSYLGYIPFDTVKFNGSLMT- 889
           SES  + NP+ +R L  +L   G ++ LDDFG  T    ++ L  +P   VK +  L+  
Sbjct: 500 SESAAVANPDAARRLAEQLGAAGCAVLLDDFGMTTG--AVTALRNLPLWAVKIDTGLVRT 557

Query: 890 -GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             ++ +  A++ +++ +A++    +IA+ +        L  +G    Q  HV  P     
Sbjct: 558 IDTSPRDRALVEAVVQIARSAGMIVIAEGVDRATLPPTLLDIGVGIAQGYHVGRPRRLTE 617

Query: 949 IL 950
           +L
Sbjct: 618 LL 619


>gi|222033833|emb|CAP76574.1| Uncharacterized protein yegE [Escherichia coli LF82]
          Length = 1105

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDGNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHNERAAISLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|42523448|ref|NP_968828.1| hypothetical protein Bd1971 [Bdellovibrio bacteriovorus HD100]
 gi|39575654|emb|CAE79821.1| hypothetical protein Bd1971 [Bdellovibrio bacteriovorus HD100]
          Length = 400

 Score =  271 bits (692), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 127/259 (49%), Gaps = 10/259 (3%)

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
           ++ ++  +  A +N E  L Y PI+ L ++ I G EAL++W+ P+ G +S + F+ I E 
Sbjct: 143 QIKLENQIFQAFQNKEFELFYQPIVNLKNKTITGCEALLRWNSPQHGLVSPNLFIDIIEN 202

Query: 764 LCMIKAINLFMLERIARDIISWRDQANM-------PPIFILINIASKDLLDNELCEGMQA 816
             M+  I  +++ +  +D+ + +DQ  +           + INI+ +    ++    ++ 
Sbjct: 203 SSMVIPIGHWIINQALKDLRTIQDQLRLNKKERMADDFMMSINISGRQFTHSDFVNNLED 262

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L  K       IKL  +E ++M +   +   L + R +G ++++DDFGT  S L YL  +
Sbjct: 263 LREKHDLHTQNIKLEMTERIMM-DGAIAIDALNQCRSLGYAISIDDFGTGFSGLQYLTQM 321

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K + S +       K  A++ SII +A  ++  +IA+ I    +   L  +G  +
Sbjct: 322 PISFLKIDRSFVMKILSDPKSKAVVSSIIHLAHAMDIEVIAEGIEHHEEALVLETLGARF 381

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    + P+     LKL+
Sbjct: 382 GQGYLFSKPVDLGRFLKLI 400


>gi|17549424|ref|NP_522764.1| hypothetical protein RS03147 [Ralstonia solanacearum GMI1000]
 gi|17431677|emb|CAD18354.1| probable signal transduction protein ggdef domain [Ralstonia
           solanacearum GMI1000]
          Length = 450

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 2/313 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +Q V A     + + +  +R +  + G+G   +DW +    V+     A +LG A  
Sbjct: 114 IVQVQDVTARRLALESLQASEQRLAYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGYAHD 173

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            +    ++W   +H  D       +   +       + E R+R  + Q+ WM  R R   
Sbjct: 174 ELSTDPQDWFAMVHPQDAVLSVRRIYRHLRGDADSFEVEQRLRNQEGQWVWMSARGRVTQ 233

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++ G  +R  G   D+T ++  L+     A  D LT +PN +   DRL   +  +    
Sbjct: 234 RDALGIAVRVSGTLQDVTRRRAMLDQAHHLALHDPLTDLPNARLLRDRLFVAIQAARRAG 293

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +L   V+ +D+D++K +ND  G  VGD VL +   R+   L+  D +ARL G+ F  +L 
Sbjct: 294 SL-VAVVFVDLDRFKPVNDEYGHGVGDLVLKATAMRLRSGLRASDTVARLGGDEFVAVLT 352

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +      + + +  P  +    +++  S G A + S    +  +++ A+ AMY
Sbjct: 353 HCQTRDDVEQTVERLIEQLQAPFRVEGHVLSMGVSAGVALYPSDGRDAQTLIRCADAAMY 412

Query: 683 HAKHRGGNHVESF 695
             K  GGN     
Sbjct: 413 EVKRAGGNDFGFH 425



 Score = 70.0 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 25/222 (11%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           +  D      A+  S   +         +     +  + G  + ++    R+     H +
Sbjct: 1   MLEDHHLYKAAIEHSPIGIGLCAPKGRFLDVNRALCALTGHEAQAL--RARDLFDLCHPD 58

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS--NGDILRYIGIAN 517
                R  +++ +   +  L  E R    D    W+   +        +G     I    
Sbjct: 59  YAARTRERVEALLAGEQDALSLETRFVRPDGSTVWVQADLALARAEAGDGQDGHLIVQVQ 118

Query: 518 DITEQKKSLE----GILCNAF-QDNLTGI-------------PNRQSFLDRLTTILDLSA 559
           D+T ++ +LE         A+  D   G+              NR++  + L    D  +
Sbjct: 119 DVTARRLALESLQASEQRLAYVLDGA-GLGTFDWSMRVRHVSFNRRT-AEMLGYAHDELS 176

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           TD      ++    D    +  +     GD     + +R+  
Sbjct: 177 TDPQDWFAMVHPQ-DAVLSVRRIYRHLRGDADSFEVEQRLRN 217


>gi|218548064|ref|YP_002381855.1| hypothetical protein EFER_0673 [Escherichia fergusonii ATCC 35469]
 gi|218355605|emb|CAQ88216.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324112993|gb|EGC06969.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 749

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 182/449 (40%), Gaps = 24/449 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN +S    L +              +
Sbjct: 308 IINYMAVLA--TRQRAVVNRIRRLAYFDPVVHLPNIRSLNRTLASA---------PWSVI 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    GI +      +++  +  +L+  + + +LSGN   + L +E +  
Sbjct: 357 CYLRVPGMEMLVKNYGIMLRIQYKQNISHWLAPMLEKDEYVYQLSGNDLALRLNTEGHQE 416

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHA 684
           +I      ++             +     I +    S       +L      AEL++   
Sbjct: 417 RIEAIDKHLKNF---RFMWDGMPLQPQIGISYCYVRSPVNHIYLLLGELSTVAELSIATN 473

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  V     D+V +   L  A+E+    L+  PI+ +  +  V  E L++ 
Sbjct: 474 APESMQRRGAMHVQRDLKDKVAMMNRLQQALEHDRFCLMAQPIVGVRGD--VYHEILLRM 531

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +    G I+   F+ +A E  +  AI+L+++E   + +   R++         IN++   
Sbjct: 532 EDDANGRINPDIFLPVAHEFGLSSAIDLWVIEHTLQFMAVNREKIPAQ--RYAINLSPTS 589

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +    L E ++ L++K      ++    +ES  + N E+++  L +L+++G  + +DDFG
Sbjct: 590 VCRQRLPEEVRHLLTKYQIEAWQLIFEVTESNALTNMEQAQNTLLQLQELGCRIAIDDFG 649

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E 
Sbjct: 650 TGYASYARLKNVNADIMKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEYVENEE 709

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +    +G DY Q +        N I+ 
Sbjct: 710 IHQAALSLGIDYFQGNFFGEAKPLNEIVA 738


>gi|24375465|ref|NP_719508.1| hypothetical protein SO_3978 [Shewanella oneidensis MR-1]
 gi|24350315|gb|AAN56952.1|AE015828_8 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 306

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 147/304 (48%), Gaps = 2/304 (0%)

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           +GD VL  L +R+         +AR++G  F ++   + + ++       +      P+ 
Sbjct: 2   IGDKVLAILGQRLQHNTHNDTFIARMAGAEFVLVQAYQPSEIETNKLINQIINCCHSPVG 61

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV- 705
           +    I++  SIG A   +  I ++ +L+ A  AM  +K  G  +    + +     +  
Sbjct: 62  IANTLISLHCSIGIAQAPNDGIDAATLLQKAGAAMNISKAEGLAYTHFDQQTQRALSQRY 121

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +++  L  A++ +E  L Y PII L    ++G EAL++W +P  G+++  +F+ +AE   
Sbjct: 122 LLESHLIEALKRNEFSLHYQPIIELNTRNVIGAEALLRWHNPVLGSVTPDQFIPLAERNG 181

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
            I  I  F+L    +   +W +        I INI+   + +    E +  L++      
Sbjct: 182 QIMEIGNFVLHSTIQQTANWCNMLQRE-FKIAINISPIQMRNPRFAEHIAELLTLYQLPA 240

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + ++L  +E +++ +   +   + +LR++G+S++LDDFGT  S LSYL    FDT+K + 
Sbjct: 241 TALELEITEGMLLQDEHLAHNAIHQLRELGVSISLDDFGTGYSSLSYLQKYAFDTLKIDR 300

Query: 886 SLMT 889
             + 
Sbjct: 301 CFIR 304


>gi|206576295|ref|YP_002237162.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|290508312|ref|ZP_06547683.1| inner membrane protein yfgF [Klebsiella sp. 1_1_55]
 gi|206565353|gb|ACI07129.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|289777706|gb|EFD85703.1| inner membrane protein yfgF [Klebsiella sp. 1_1_55]
          Length = 742

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 170/438 (38%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+     +   AF D +  +PN ++    L         +     T+  + I + + +
Sbjct: 317 TQQRLIYARVRQMAFLDPVVHMPNLRALSRAL---------NGTSWSTLCFLRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   +  LL+  + +  L+G+     L SE +  +I     ++R+
Sbjct: 368 GRHYGVLLRIQYKQMLANHLSALLQPNEAVYHLAGHDLVFRLNSEGHQARIHLIDRSLRQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   +  S          +     E+   A++++            + 
Sbjct: 428 F---RFYWDGVPLQPRIGMSYCNVRSPVKHLYLLLGELNTIADMSLASGHPENMQRRGAG 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V     D+V++   +  A+E     L+  PI  +  +     E L++ +         +
Sbjct: 485 HVQQDLKDKVVMMNRILKALEQDHFVLMAQPIQGIRGDN--YHEVLLRMEGESGELTGPN 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +   ++ +++E     + + R       + + IN++   L  ++  + ++
Sbjct: 543 AFLPVAHEFGLSSRVDQWVIEHTLAFMDTHRRALPG--LRLAINLSPVTLSRSQFPQEVE 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+      P +I    +E+  + NPE     L  LR +G  + +DDFGT  +  + L  
Sbjct: 601 ALLQTYNIEPWQIIFELTENYALSNPELVCQTLEHLRALGCRVAIDDFGTGYASYARLKT 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +     +     ++ SI  +A+     ++A+ +      + +  +G D
Sbjct: 661 MNVDILKIDGSFIRNLLASSLDYQVVDSICRLARMKNMQVVAEYVESPEIRQAVIALGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P+    + +
Sbjct: 721 YLQGYDIGVPVPLAQLAE 738


>gi|13094191|dbj|BAB32780.1| C-terminus of YkoW-like protein [Pseudomonas resinovorans]
          Length = 276

 Score =  270 bits (691), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE--DLCLAVEN 717
              + +    +  +L++A+ AMY AK  G N    F VS  + D+        +  A+ +
Sbjct: 1   MTLYPNDNENADTLLRHADQAMYKAKQSGRNRFHLFDVSKDKMDKSAFDTVIRVRQALHD 60

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            EL L Y P I L    ++G EAL++W HP+ G I    F+ + E+  +I  I  +++++
Sbjct: 61  GELCLHYQPKISLSSGAVIGFEALLRWQHPRDGLILPQYFIPLIEQSDLIMEIGEWVIDQ 120

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRIKLSFSESV 836
               I  W D  +     + +NI++         + ++ L+       P  + +  +ESV
Sbjct: 121 ALSQIEQWADLGH--SWSVSVNISALHFKKENFVKSLKFLLDSHPNVLPQMLDIEITESV 178

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEK 894
           V+ +       L   + +G++ +LDDFGT  S LSYL  +P  ++K + S +      + 
Sbjct: 179 VIEHLSHVTQCLIACQDLGVTFSLDDFGTGYSSLSYLKQLPTQSIKIDKSFIRDILIDKD 238

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEID 923
            + + ++II +AK+    +IA+ +     
Sbjct: 239 SLGLTKAIIGLAKSFNREVIAEGVETVEH 267


>gi|182626684|ref|ZP_02954427.1| putative diguanylate cyclase [Clostridium perfringens D str.
           JGS1721]
 gi|177908014|gb|EDT70597.1| putative diguanylate cyclase [Clostridium perfringens D str.
           JGS1721]
          Length = 507

 Score =  270 bits (691), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 176/426 (41%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R  F + L               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFEFKNNLEMW--------KGEYTLFLIDLRKFSLINDALGRGKGDEVLREF 138

Query: 596 TRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              +  +   L   ++     G  F + + S  N   I +    +     + +N L +EI
Sbjct: 139 GNGLNNISKSLASKNLYGVYGGEEFLVAINS-KNKEDIIEVLNKLDNLKKIRLNSLNKEI 197

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +  +IG++       +  E+++    A   AK     +   +        +    I  D
Sbjct: 198 KMEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEDFIYAIEYTEELRSIRKKNNLIIRD 256

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+ N +LY VY P I  +D++I G E LI+W+H   G+IS+S+ +   EE+  IK +
Sbjct: 257 IKDALINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDL 316

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L++ E             N   +   +NI+   L    +   +  +       P  I L
Sbjct: 317 DLYVFESTCEFQSRLIQ--NNIELQCSVNISINTLKHRGVGSNLYKISKNYNLKPENITL 374

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++ 
Sbjct: 375 EILENSDLEVSGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISD 434

Query: 891 S-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     
Sbjct: 435 IPNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEF 494

Query: 950 LKLLKE 955
           L+ +  
Sbjct: 495 LEYVNN 500


>gi|323964627|gb|EGB60100.1| EAL domain-containing protein [Escherichia coli M863]
          Length = 263

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 129/263 (49%), Gaps = 5/263 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           ++    + + +  +L  A+EN +L + Y P I     E+  LEAL++W  P+ G I   +
Sbjct: 1   MNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLD 59

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AEE  +I  +  +++  + R +  WRD+     + + +NI+++ L D  +   ++ 
Sbjct: 60  FISYAEESGLIVPLGRWVILDVVRQVAKWRDKGIN--LRVAVNISARQLADQTIFTALKQ 117

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++ +  +    I +  +ES ++ N E +  ++ +  ++G  + LDDFGT  S LS L   
Sbjct: 118 VLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF 177

Query: 877 PFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K +   +          +++R+I+ +A+ +   +IA+ +  + +   LT+ G + 
Sbjct: 178 PIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESKKEDAFLTKNGINE 237

Query: 935 IQDSHVASPLGFNSILKLLKERF 957
            Q    A P+   +  +  K   
Sbjct: 238 RQGFLFAKPMPAVAFERWYKRYL 260


>gi|110642277|ref|YP_670007.1| putative sensor protein [Escherichia coli 536]
 gi|191170041|ref|ZP_03031595.1| sensory box-containing diguanylate cyclase [Escherichia coli F11]
 gi|300981674|ref|ZP_07175660.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|110343869|gb|ABG70106.1| hypothetical transmembrane protein YegE [Escherichia coli 536]
 gi|190909557|gb|EDV69142.1| sensory box-containing diguanylate cyclase [Escherichia coli F11]
 gi|300307475|gb|EFJ61995.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|324013884|gb|EGB83103.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 1105

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHSERAAISLDEQWRMIKENQLMMIAHGIASPRLLEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|88859472|ref|ZP_01134112.1| EAL domain protein [Pseudoalteromonas tunicata D2]
 gi|88818489|gb|EAR28304.1| EAL domain protein [Pseudoalteromonas tunicata D2]
          Length = 745

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 173/433 (39%), Gaps = 16/433 (3%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A+ D    +PNR      L   ++     +  +  ++V +I ++ + +   G   
Sbjct: 317 RLTELAYTDVALNMPNRNW----LQREIENMNASEQQKTLLLVFEILQFDEKSFSFGYEF 372

Query: 588 GDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            +  L  L   I + L      +A    +  G+++ ++            +         
Sbjct: 373 CNKTLKRLQLNIQQQLASYSPRIALFKNDSLGVLIANDPPLSD-----SVIDSFNRQAFV 427

Query: 647 LLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
                  +   +      S  +  +S++   AE  +  A       +     ++    R 
Sbjct: 428 ADGVLQIMDVRVLAVDLNSVLQNNASQIFNLAESTLNEANINLAEFIRFTPANTQALTRR 487

Query: 706 -MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
             +   L  A+ N+EL +   P + L   ++VG EAL +W       IS  EF+ +AE  
Sbjct: 488 FDLMLKLRSAIRNNELMIALQPKVNLNSHKVVGFEALARWQLADGTFISPDEFIELAETA 547

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I  ++  + ++I               + I  N ++ DLL ++    M   I+K   S
Sbjct: 548 GLISVLDKLIFDKILEATNVLNCHGY--CLPIAFNASTSDLLSDQYFVEMTEKIAKYGVS 605

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P +++L  +E+  + N E+    L +  K+GI +++DDFGT  S L ++  IP   +K +
Sbjct: 606 PQQLELEVTETQAIFNYEKVNKTLHKFAKLGIKISIDDFGTGYSSLQHIAQIPAHAIKID 665

Query: 885 GSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              ++     E    I+  I+ +A      +IA+ +  + + + L+ +GC   Q    A 
Sbjct: 666 RCFVSNLQNNESNEHIINMIMMLADTFGFEVIAEGVENKYEQEWLSNIGCRIAQGYLFAK 725

Query: 943 PLGFNSILKLLKE 955
           P+  + +L  LK 
Sbjct: 726 PMFMDDLLVWLKN 738


>gi|332766209|gb|EGJ96419.1| EAL domain protein [Shigella flexneri 2930-71]
          Length = 500

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 88  WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 138

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 139 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 195

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 196 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 255

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 256 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 312

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 313 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 370

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 371 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 430

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 431 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 490

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 491 LIGRPQPLAD 500


>gi|312946690|gb|ADR27517.1| putative sensor protein [Escherichia coli O83:H1 str. NRG 857C]
          Length = 1105

 Score =  270 bits (690), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 199/562 (35%), Gaps = 15/562 (2%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKKL-RILLQTVNSTHQRHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +            R   V AS G      +   ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIISAVNDYHFIWEGRVHRVGASAGITLIDGNNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
            V  +      +      + + E   +  EN  + + +      + E        ++    
Sbjct: 840  VTIYEPQQAAAHNERAAISLDEQWRMIKENQLMMIAHGIASPRLPEASNLWLISLKLWSC 899

Query: 748  KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 900  ESEIIDEQTFRRSFSDPALSHALDQRVCHDFFQQAAKAVASKG---LSIALPLSVAGLSS 956

Query: 808  NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
              L   +   +  +      + L      +  + E       +LR  G  +     G   
Sbjct: 957  ATLVNELLEQLENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVFSQVGRDL 1012

Query: 868  SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
             + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 1013 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 1072

Query: 926  ELTRMGCDYIQDSHVASPLGFN 947
             L+ +G D I    +A+    +
Sbjct: 1073 TLSGIGVDLIYGDVIANAQPLD 1094



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 12/363 (3%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L   +     +     +  ++        I + + +   R   +         V+    
Sbjct: 189 RLLFESLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSL 248

Query: 234 IDFGFLSKLVNLPSGELLI--WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYIT 286
           +     S L    +  +    W     I L ++++  +       R H      +     
Sbjct: 249 MMAADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAM 308

Query: 287 FSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWIL 346
                 +A++     +     A    +  +   L    F      +   + +  +   I 
Sbjct: 309 EYSAIGMALVGTEGQWLQSNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLIS 368

Query: 347 IFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDG 404
             I    +      R  + +     V  +        + + Q   +       Q      
Sbjct: 369 GEINTYSMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLM 428

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   DR + 
Sbjct: 429 ERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHA 487

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             ++   +   R   + EFR+   D     +      + N  G++ R +GI  D+TE K+
Sbjct: 488 EKVIRDSL-QSRSPFKLEFRIAVKDG-IRHIRALANRVLNKEGEVERLLGINMDMTEVKQ 545

Query: 525 SLE 527
             E
Sbjct: 546 LNE 548



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 87/293 (29%), Gaps = 18/293 (6%)

Query: 244 NLPSGELLIWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
                   +    SE   + +L    ++F   YL     + ++ + +   +A    L  +
Sbjct: 149 GDDPLRAFLIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFESLLTLAITLTLSWL 207

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           S  Y                 +    +++  ++       LI    ++ +  +       
Sbjct: 208 SMLYLPW-----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSL 256

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +   +     L+++L    +   + A     + I     R   A+  S   + 
Sbjct: 257 LATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMA 316

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
                   + +   +   LG +   + G    +       D +     ++  +       
Sbjct: 317 LVGTEGQWLQSNKALCQFLGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTY 374

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             E R    +    W ++ +  + +++G  L +I    DI E K++ +     
Sbjct: 375 SMEKRYYNRNGDVVWALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 427


>gi|300947792|ref|ZP_07161949.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300452638|gb|EFK16258.1| PAS domain S-box [Escherichia coli MS 116-1]
          Length = 897

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 198/562 (35%), Gaps = 15/562 (2%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                ++ +F + ER  + +   G+ V   D+        P    + G       G    
Sbjct: 334 EVKQLNEALFQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLL 393

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
            + +I   D       + S     R  ++ +  +       + +   I P+S  +G  + 
Sbjct: 394 TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIG 452

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            + +  D+TE +K L  +  +A  D LT + NR SF  +L  IL  +    + R  ++ I
Sbjct: 453 SVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL-RILLQTVNSTHQRHALVFI 511

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
           D+D++K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 512 DLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARF 571

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                +            R   V AS G      +   ++E++  A++A Y +++ G   
Sbjct: 572 IATRIISAVNDYHFIWEGRVHRVGASAGITLIDDNNHQAAEVMSQADIACYASQNGGRGR 631

Query: 692 VESFRVSSFRSDR----VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           V  +      +      + + E   +  EN  + L +      + E        ++    
Sbjct: 632 VTVYEPQQAAAHSERAAMSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSC 691

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           +   I    F     +  +  A++  +     +             + I + ++   L  
Sbjct: 692 ESEIIDEQTFRRSFSDPALSHALDRRVFHDFFQQAAKAVASKG---LSIALPLSVAGLSS 748

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
             L   +      +      + L      +  + E       +LR  G  + L   G   
Sbjct: 749 ATLVNELLEQRENSPLPARLLHLIIPAEAIFDHAESV----QKLRLAGCRIVLSQMGRDL 804

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            + + L     D +  +G L            ++  I   A+ +    IA  +   + + 
Sbjct: 805 QIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMD 864

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L+ +G   I    +A+    +
Sbjct: 865 TLSGIGVVLIYGDVIANAQPLD 886



 Score = 85.8 bits (211), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 65/215 (30%), Gaps = 2/215 (0%)

Query: 318 IVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVL 377
              +    +++  ++       LI    ++ +  +              +   +     L
Sbjct: 7   PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFL 66

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
           +++L    +   + A     + I     R   A+  S   +         + +   +   
Sbjct: 67  LILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQSNKALCQF 126

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           LG +   + G    +       D +     ++  +         E R    +    W ++
Sbjct: 127 LGYSQEELRG--LTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALL 184

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  + +++G  L +I    DI E K++ +     
Sbjct: 185 AVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQL 219



 Score = 84.6 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 103/343 (30%), Gaps = 12/343 (3%)

Query: 194 IIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLI- 252
           ++        I + + +   R   +         V+    +     S L    +  +   
Sbjct: 1   MLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHM 60

Query: 253 -WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVGYITFSGIACIAILFCMSFYYPMV 306
            W     I L ++++  +       R H      +           +A++     +    
Sbjct: 61  PWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQSN 120

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
            A    +  +   L    F      +   + +  +   I   I    +      R  + +
Sbjct: 121 KALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVV 180

Query: 367 IQPALVGGLVLIVILIGFTVIQ--HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
                V  +        + + Q   +       Q      ER +LA    G  +W+W++ 
Sbjct: 181 WALLAVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELK 240

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
            +  +    +  +  +    +    + W   +   DR +   ++   +   R   + EFR
Sbjct: 241 PNIYSWDKRMFELYEIPPH-IKPNWQVWYECVLPEDRQHAEKVIRDSL-QSRSPFKLEFR 298

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           +   D     +        N  G++ R +GI  D+TE K+  E
Sbjct: 299 IAVKDG-IRHIRALANRELNKEGEVERLLGINMDMTEVKQLNE 340


>gi|329298000|ref|ZP_08255336.1| diguanylate phosphodiesterase [Plautia stali symbiont]
          Length = 335

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 122/251 (48%), Gaps = 3/251 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           IK +L  A+E  +L L   P +   D+ ++G EAL++W HP+ G IS   F+ +AE+  +
Sbjct: 84  IKRELASAIERQQLELYSQPQVDG-DKNLIGFEALLRWKHPEKGFISPEVFIPVAEKSGL 142

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  I  ++LER+ + I+ W     +PP+   INI+   L+  +     Q  +S+    P 
Sbjct: 143 IIDIGKWVLERMLQQIVEWDRVLRLPPLVFSINISPLQLMHRDFTHDTQLTLSQYKIRPE 202

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           R+K   +E+  + + +R   ++     +GI   +DDFG   S L  L     D +K + S
Sbjct: 203 RLKFEITETTFIYDQQRIGDVINHFSLLGIKWAIDDFGVGYSSLKLLSDFAIDDIKIDKS 262

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+      E    +++  I + + +   ++A+ I  +   + L   GC   Q  H A PL
Sbjct: 263 LIMHIFENESAAIVVQKTIELLRAMGLNVLAEGIESKEYFEHLRNKGCHLFQGYHFARPL 322

Query: 945 GFNSILKLLKE 955
                L+ +K+
Sbjct: 323 PAAEALQWIKK 333


>gi|114777400|ref|ZP_01452397.1| hypothetical protein SPV1_13909 [Mariprofundus ferrooxydans PV-1]
 gi|114552182|gb|EAU54684.1| hypothetical protein SPV1_13909 [Mariprofundus ferrooxydans PV-1]
          Length = 639

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 173/435 (39%), Gaps = 16/435 (3%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I E     E +  ++  D+LTG+ NR++F   L  I+            V  I I  +  
Sbjct: 216 INELTTQAEQMRRDSLDDSLTGLANRRAFNAMLENIIHDKEQGGTGSLAV--IRISGFAD 273

Query: 579 INDVLGIAVGDDVLVSLTRR--IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
            N + GI  GDD+L+ + ++  +          AR++   FG+IL   ++          
Sbjct: 274 YNRLHGIQAGDDLLIDIAKKISLTANAYHMSTAARITDTDFGVILPLVDSDKAAEFGQSI 333

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
                 +   +   E+   A  G A +  +  T SE++ +A+ A+  A H GGN      
Sbjct: 334 SNAINRLANTIDMAEL---AHTGIALFHET-STMSEIMSDADAALAEASHLGGNGFVIQS 389

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI-SSS 755
             S     +  K+ +  A+ N++++L+  P+  L   +++  E  I+        + +  
Sbjct: 390 KKSEVPGNIAWKQLIEKAMLNNDIHLLAQPVFNLQ-RQVLYTELRIRIQDQDGNILATPG 448

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F  +A+ L +   ++ F++ R         +  +     + +N++   + +      ++
Sbjct: 449 VFTSMADRLELNTTLDQFVITRA----TGLIEAGHATTSPLAVNLSPHSINNPSFISWLE 504

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             ++    +   +    SE  ++   E++   +  +      + ++ FGT+ S    +  
Sbjct: 505 NHLNHHGDTDGHLLFEISEHGLLQQIEQATAFIALIHAHRGKVVMEHFGTRLSSFQTMRQ 564

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS              L+++  +A  ++  IIA+ I    D + +  +G +
Sbjct: 565 LKVDYIKLSGSYTRDITVNNDNRFFLQTVADIAHGLDIEIIAEQIETAADAETMQALGIN 624

Query: 934 YIQDSHVASPLGFNS 948
            +Q  +   P     
Sbjct: 625 AMQGYYFGEPAPLKE 639


>gi|168208120|ref|ZP_02634125.1| putative diguanylate cyclase [Clostridium perfringens E str.
           JGS1987]
 gi|170660593|gb|EDT13276.1| putative diguanylate cyclase [Clostridium perfringens E str.
           JGS1987]
          Length = 507

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/426 (22%), Positives = 177/426 (41%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R  F + L               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFEFKNDLEMW--------KGEYTLFLIDLRKFSLINDALGRGKGDEVLREF 138

Query: 596 TRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + +  +   L   ++     G  F + + S  N   I +    +     + +N L +EI
Sbjct: 139 GKGLNNISKSLASKNLYGVYGGEEFLVAINS-KNKEDIIEVLNKLDNLKKIRLNSLNKEI 197

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +  +IG++       +  E+++    A   AK    +    +        +    I  D
Sbjct: 198 KMEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEAFSSSIEYTEELKSIRKKNNLIIRD 256

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  ++ N +LY VY P I  +D++I G E LI+W+H   G+IS+S+ +   EE+  IK +
Sbjct: 257 IKDSLINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDL 316

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L++ E             N   +   +NI+   L    +   +  +       P  I L
Sbjct: 317 DLYVFESTCEFQSRLIQ--NNIELQCSVNISVNTLKHRGVGYNLYKISKNYNLKPENITL 374

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++ 
Sbjct: 375 EILENANLEVSGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISD 434

Query: 891 S-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     
Sbjct: 435 IPNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEF 494

Query: 950 LKLLKE 955
           L+ +  
Sbjct: 495 LEYVNN 500


>gi|333001533|gb|EGK21101.1| EAL domain protein [Shigella flexneri VA-6]
          Length = 448

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 36  WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 86

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 87  GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 143

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 144 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 203

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 204 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 260

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 261 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 318

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 319 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 378

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 379 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 438

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 439 LIGRPQPLAD 448


>gi|288934107|ref|YP_003438166.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
 gi|288888836|gb|ADC57154.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
          Length = 742

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 170/438 (38%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T+Q+     +   AF D +  +PN ++    L         +     T+  + I + + +
Sbjct: 317 TQQRLIYARVRQMAFLDPVVHMPNLRALSRAL---------NGASWSTLCFLRIPELELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   +  LL+  + +  L+G+     L SE +  +I     ++R+
Sbjct: 368 GRHYGVLLRIQYKQMLANHLSALLQPNEAVYHLAGHDLVFRLNSEGHQARIHLIDRSLRQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   +  S          +     E+   A++++            + 
Sbjct: 428 F---RFYWDGVPLQPRIGMSYCNVRSPVKHLYLLLGELNTIADMSLASGHPENMQRRGAG 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            V     D+V++   +  A+E     L+  PI  +  +     E L++ +         +
Sbjct: 485 HVQQDLKDKVVMMNRILKALEQDHFVLMAQPIQGIRGDN--YHEVLLRMEGESGELTGPN 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +   ++ +++E     + + R       + + IN++   L  ++  + ++
Sbjct: 543 AFLPVAHEFGLSSRVDQWVIEHTLAFMDTHRRALPG--LRLAINLSPVTLSRSQFPQEVE 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL+      P +I    +E+  + NPE     L  LR +G  + +DDFGT  +  + L  
Sbjct: 601 ALLQTYNIEPWQIIFELTENYALSNPELVCQTLEHLRALGCRVAIDDFGTGYASYARLKT 660

Query: 876 IPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +     +     ++ SI  +A+     ++A+ +      + +  +G D
Sbjct: 661 MNVDILKIDGSFIRNLLASSLDYQVVDSICRLARMKNMQVVAEYVESPEIRQAVIALGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P+    + +
Sbjct: 721 YLQGYDIGVPVPLAQLAE 738


>gi|172057193|ref|YP_001813653.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Exiguobacterium sibiricum 255-15]
 gi|171989714|gb|ACB60636.1| diguanylate cyclase/phosphodiesterase with GAF sensor
           [Exiguobacterium sibiricum 255-15]
          Length = 581

 Score =  270 bits (690), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/425 (20%), Positives = 185/425 (43%), Gaps = 17/425 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT + N +  ++RL + +       N    +MV+++D +  IN   G  VG+ VL  +
Sbjct: 154 DALTDVYNERY-MNRLISSVA------NQSTFLMVLNLDNFHAINATYGYRVGNKVLQEI 206

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNS--LKIADFAIAMRKSIAMPIN-LLEREI 652
             R+  +     ++ R+ GN F ++   +          +A  + ++I  PI  +    I
Sbjct: 207 ASRLKYVSILDHVVGRMDGNEFIVLAPIDEAEFAEHGNTYANWIIEAIERPIEGISHEPI 266

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS---FRSDRVMIKE 709
            VTAS G +  T   +     +  AE  M   K  G         +          ++++
Sbjct: 267 RVTASSGVSLLTGDYMNRQTQVYAAEALMQQVKLDGKAGTLFVNQARELEQHPFEHVLEK 326

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   +  L Y  I        V +EAL++W+HP  G +S ++F+ +AE +     
Sbjct: 327 ELGQALARGQFELYYQRIFNAKLGHTVAVEALLRWNHPVLGFVSPADFIPVAERMGSFGQ 386

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  F + +   D +    +    P+ I IN+++     + +   + A  ++  +   RI 
Sbjct: 387 IGRFTVCQAITDSVRLEQELGH-PVTISINLSASQFQSDAMLADLLAFANQPPFKRDRIV 445

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L   E V+     ++   L  LR+ G  L++D FG+  + L+ L  +P  +VK +     
Sbjct: 446 LEIREEVLQTGRRQAIGRLESLRQAGYRLSVDHFGSHYASLNSLLRLPVQSVKLDPIFTR 505

Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD-YIQDSHVASPLGF 946
              + +   ++L+S+  + + +   ++ +++      +++T +G   Y+Q  ++  P   
Sbjct: 506 RLAQNQLEQSMLQSVYALTQALNIALVIQEVETVSQFRQITLLGEKLYVQGHYLHHPQPI 565

Query: 947 NSILK 951
            +++ 
Sbjct: 566 TNLIA 570


>gi|170769775|ref|ZP_02904228.1| sensory box-containing diguanylate cyclase [Escherichia albertii
            TW07627]
 gi|170121389|gb|EDS90320.1| sensory box-containing diguanylate cyclase [Escherichia albertii
            TW07627]
          Length = 1105

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 101/558 (18%), Positives = 202/558 (36%), Gaps = 19/558 (3%)

Query: 392  ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                 ++ +F + ER  + +   G+ V   D+        P    + G A     G    
Sbjct: 542  EVKQLNEALFQEKERLHITLDSIGEAVVCIDLAMKITFMNPIAEKMSGWAQEEALGVPLL 601

Query: 452  WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
             + +I   D       + S     R  ++ +  +   +   + +   I P+S  +G  + 
Sbjct: 602  TVLHITFGDNGPLMENIYSA-DTSRSAIEQDVVLHCRNGGSYDVHYSITPLSTLDGSNIG 660

Query: 512  YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
             + +  D+TE +K L  +  +A  D LT + NR SF  +L T+L    +    R  ++ I
Sbjct: 661  SVLVIQDVTESRKMLRQLSYSASHDALTHLANRTSFEKQLRTLLQTVNSTHQ-RHALVFI 719

Query: 572  DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            D+D +K +ND  G A GD +L  L   +  +L+  D+LARL G+ FG++L   N      
Sbjct: 720  DLDHFKAVNDSAGHAAGDALLRELASLMLSMLRSSDLLARLGGDEFGLLLPDSNIESARF 779

Query: 632  DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
                 +                V AS G          ++E++  A++A Y +K+ G   
Sbjct: 780  IATRIIGAVNDYHFIWEGHVHRVGASAGITLIDGCNHQAAEVMSQADIACYASKNGGRGR 839

Query: 692  VESFRVSSFRSDRVMI-----KEDLCLAVENSELYLVYHPIIRLMDEEIVG-LEALIQWD 745
            V  +      +          ++ L   ++ ++L +  H +      E        +Q  
Sbjct: 840  VTVYEPQQATAHSERTVMPPDEQWL--MIKENQLMMFAHGVASPRIPETCNLWLISLQLQ 897

Query: 746  HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
            + +   I    F     +  +  A++  +L    +        A    + I +  +   L
Sbjct: 898  NDEGNVIDEHVFRHGFSDPALSHALDRRILHEFFQQTA---KSAADKGLSIALPFSVAGL 954

Query: 806  LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
                L + +   + K+   P  + L      ++ +       + +LR     + L   G 
Sbjct: 955  SSVTLVDELLEQLEKSPLPPRLLHLIIPAEAIIDH----AQAIQKLRLADCRIVLSQVGR 1010

Query: 866  KCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEID 923
               + + L     D +  +  L            ++  I   A+ +    IA  +   + 
Sbjct: 1011 DLQIFNTLKANMADYLLLDSELSASVQGNLMDEMLISIIQGHAQRLGVKTIAGPVALPLV 1070

Query: 924  IKELTRMGCDYIQDSHVA 941
            +  L+ +G D I    +A
Sbjct: 1071 MDTLSAIGVDLIYGDVIA 1088



 Score = 86.5 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 110/368 (29%), Gaps = 22/368 (5%)

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            L         +     +  ++        I + + +   R   L    A    +   + 
Sbjct: 189 RLLFETLLTLAITLTLSWLSMLYLPWPFTFIIVLLMWSAVR---LPRMEAFLIFLTTVMM 245

Query: 234 IDFGFLSKLVNLPSGELLI-----WRACSEIALSSSLIIFLFMYLHWNRWHA-----KVG 283
           +     +  + L +    +     W     I L ++++  +       R H      +  
Sbjct: 246 VSLMLAADPLLLTTPRNDVMNNMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFR 305

Query: 284 YITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPA 343
                    +A++     +     A    +  +   L    F         +    L   
Sbjct: 306 NAMEYSAIGMALVGTEGQWLQANKALCQFLGYSQEELRALTF--QQLTWSEDLNKDLQHV 363

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI----LIGFTVIQHVLATGYFSQG 399
             L+        M       N  +  AL+   ++       L     I+ +       Q 
Sbjct: 364 EKLVNGEINTYSMEKRYYTRNGDVVWALLAVSLVRHADGTPLYFIAQIEDINDLKRTEQV 423

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
                ER +LA    G  +W+W++  +  +    +  +  +    +    + W   +   
Sbjct: 424 NKQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFELYEIPPH-IKPNWQVWYDCVLPE 482

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDI 519
           DR++   ++   +  R    + EFR+   D     +      + N  G++ R +GI  D+
Sbjct: 483 DREHAEKVIRDSLQARL-PFKLEFRIAVKDG-IRHIRSLANRVLNKEGEVERLLGINMDM 540

Query: 520 TEQKKSLE 527
           TE K+  E
Sbjct: 541 TEVKQLNE 548



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 87/285 (30%), Gaps = 18/285 (6%)

Query: 252 IWRACSEIALSSSL----IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT 307
           +    SE   + +L    ++F   YL     + ++ + T   +A    L  +S  Y    
Sbjct: 157 LIWVLSESIGALALVPLGLLFKPHYL-LRHRNPRLLFETLLTLAITLTLSWLSMLYLPW- 214

Query: 308 ASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
                        +    +++  ++       LI    ++ +  +     +      + +
Sbjct: 215 ----------PFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMLAADPLLLTTPRNDV 264

Query: 368 QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              +     L+++L    +   + A     + I     R   A+  S   +         
Sbjct: 265 MNNMPWLPFLLILLPANIMTMVMYAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQW 324

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
           +     +   LG +   +      +       D +     ++  V         E R   
Sbjct: 325 LQANKALCQFLGYSQEEL--RALTFQQLTWSEDLNKDLQHVEKLVNGEINTYSMEKRYYT 382

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +    W ++ +  + +++G  L +I    DI + K++ +     
Sbjct: 383 RNGDVVWALLAVSLVRHADGTPLYFIAQIEDINDLKRTEQVNKQL 427


>gi|312197114|ref|YP_004017175.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
 gi|311228450|gb|ADP81305.1| diguanylate cyclase/phosphodiesterase [Frankia sp. EuI1c]
          Length = 787

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 184/427 (43%), Gaps = 20/427 (4%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            + +   A  D LTG+PNR  F +RL   L L    DN   +++  D+D +K++ND LG 
Sbjct: 344 RQELRYQALHDPLTGLPNRTLFAERLHRALAL---RDNRPFSLVYCDLDDFKRVNDTLGH 400

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           A GD++L +   R+ E ++  D +ARL G+ F I+L  E            +   I  P 
Sbjct: 401 AAGDELLRTTAARLREGVRPGDTVARLGGDEFAILL--EREHRDPEALCRRLASMIRAPT 458

Query: 646 NLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRV-----SS 699
            L  +   V AS+G     SS       +L++A+LAMY AK +G   +  FR       S
Sbjct: 459 TLKGQPHPVGASLGLVVADSSTPPEPDALLRDADLAMYAAKRQGKGGLIVFRPELTTAES 518

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +++ L     +  + ++YHP++ L       L+A+  W+H + G ++      
Sbjct: 519 APQIRSDLEQALRGDDRHGTVKVLYHPVVELRTGHTSALDAVPLWNHHQLGEVAPDLLDR 578

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           IA+E  +   +   +L  + RD+    +Q    P  + + +     LD +    +  L++
Sbjct: 579 IADEAGLTMTLVGRVLREVCRDVA---EQGLPEPDPVFVRVPVGRGLDKQ-PADVGRLLA 634

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF- 878
               S   I L  + S  + +   +  +L R+   GI L LD  G   S        P  
Sbjct: 635 DWSVSHRAIILVLANSGGVVDLTAAARMLQRIVDSGIRLALDGVGGMASAFGGWHNNPPV 694

Query: 879 DTVKFNGSLMT---GSTEKRIAILR-SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           + ++ +         S   R  I+R +++ +A  +  T++A  I   +  +EL   GC  
Sbjct: 695 EIIRLDRCFTDPDATSAPTRTRIVREAVLGVASRLGLTVVATGIRNPVQARELAEAGCPL 754

Query: 935 IQDSHVA 941
                  
Sbjct: 755 GAGPLYG 761


>gi|238063194|ref|ZP_04607903.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
 gi|237885005|gb|EEP73833.1| diguanylate cyclase/phosphodiesterase [Micromonospora sp. ATCC
           39149]
          Length = 283

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 120/244 (49%), Gaps = 4/244 (1%)

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
             + + Y P I +   E+VG+EAL++W HP+ G +   E + +AE+  +++ +   +++ 
Sbjct: 27  GRITMYYQPQIAIATGEVVGVEALLRWRHPRRGMVDPEELIRVAEQSAVMRLLTRRVVDD 86

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
           +   +  W        +   +N++ +DL   E+ + +   +++    P R++L  +E  +
Sbjct: 87  VVEQLAQWSAAGIT--LRAALNVSVRDLHTGEIVDQIADRLARYGVRPQRLQLEITEGAL 144

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKR 895
           M +P R    + RL  IG+++ LDDFGT  S + +L  +P   VK + S + G       
Sbjct: 145 MADPRRVLATISRLHAIGVAIALDDFGTGYSSMQHLRRLPLSEVKVDRSFVLGMADDADD 204

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            AI+RS+I +A  +   ++A+ +  E   + L   GCD  Q    A P+    +   L  
Sbjct: 205 AAIVRSMIDLAGALGLRVVAEGVEDERTWRLLHAAGCDVAQGWFYARPMPAGELTAWLAR 264

Query: 956 RFPL 959
             PL
Sbjct: 265 YRPL 268


>gi|15827938|ref|NP_302201.1| hypothetical protein ML1752 [Mycobacterium leprae TN]
 gi|221230415|ref|YP_002503831.1| hypothetical protein MLBr_01752 [Mycobacterium leprae Br4923]
 gi|13093491|emb|CAC30705.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933522|emb|CAR71847.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 302

 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/271 (27%), Positives = 128/271 (47%), Gaps = 6/271 (2%)

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
             K R             RS    + + +  A++  E +LVY PI+RL D+  +G+EAL+
Sbjct: 28  EVKDRSSGWFYGHHDREQRSVHDGLLQVIPAALDRGEFFLVYQPIVRLNDKRFIGVEALL 87

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W HP  G +  + F+ +AE   MI  +  F++E+  R I +WRD +  P  F+ +N+++
Sbjct: 88  RWAHPTLGTLLPARFISLAERNGMIVPLTTFVIEQACRHIRNWRDDSTNPRPFVSVNVSA 147

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
           +++ D      ++ ++ +T      ++L  +E+  +   E S   L  L  +G+ + +DD
Sbjct: 148 RNIRDPSFLSMVERVLGETGLPAHALRLELTENASLSIDEASITRLQELSALGVGIAIDD 207

Query: 863 FGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK------RIAILRSIIPMAKNIETTIIAK 916
           FGT  S L+YL  +P D VK  G  +               I R++I +A  +   + AK
Sbjct: 208 FGTGFSSLAYLRNLPVDMVKLAGEFIENLGGDIRGRLADEQITRAMIDLAFKLGIIVCAK 267

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +        L   GCD  Q  H A  L  +
Sbjct: 268 RVETPGQAARLRDFGCDAAQGWHFAKALPAD 298


>gi|28898753|ref|NP_798358.1| hypothetical protein VP1979 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837792|ref|ZP_01990459.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|260364172|ref|ZP_05776878.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
 gi|260877255|ref|ZP_05889610.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897799|ref|ZP_05906295.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|260901572|ref|ZP_05909967.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28806971|dbj|BAC60242.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748813|gb|EDM59652.1| ggdef family protein [Vibrio parahaemolyticus AQ3810]
 gi|308087574|gb|EFO37269.1| GGDEF family protein [Vibrio parahaemolyticus Peru-466]
 gi|308090315|gb|EFO40010.1| diguanylate cyclase (GGDEF) domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308110919|gb|EFO48459.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308115232|gb|EFO52772.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Vibrio
           parahaemolyticus K5030]
          Length = 818

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 205/564 (36%), Gaps = 48/564 (8%)

Query: 405 ERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           E  +  +    D     V   D     +         +G  +  + G         H + 
Sbjct: 124 EELAKILETIFDLPNVGVLVADEDTRILGCNRAFELQMGYQNRDLVGLKTYIFSTSHHS- 182

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F   L   +    G        R A+       + I  ++ ++G +L ++G + DI+
Sbjct: 183 -QAFYDQLWKHIDEE-GYWSGNLLSRTANGSNQAHHLCIYRLTFNSGRVL-FLGFSTDIS 239

Query: 521 E-----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                 + +  +    +AF      +P R  F  +L  +   +    +    +++     
Sbjct: 240 ASLLWMKNRCEQVQDWSAF------LPTRDEFELQLDNL---ANESGHKDLNIVMTLRPN 290

Query: 576 YKK---INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----NSL 628
           + +   +   LG              I        I  +LS + F + L + +    + L
Sbjct: 291 FAQKCMLEQQLG----------FADFIMRSRY-TSIAGQLSRDVFVVCLQTPHCQWLSPL 339

Query: 629 KIADFAIA-MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-- 685
           ++   A+      +   +        V    G +          + L +A  AM  +K  
Sbjct: 340 RLIQIAMKGFFSELRSEMGNKMHATIVEGQTGVSVLGYDTNNPKQALAHAAQAMVSSKAG 399

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             G  +  +  + +    R  ++  L   +E+  + + + PII      +V  EAL ++ 
Sbjct: 400 ENGYFNFYNSELHAELVKRQHLETFLKTQIESELVDVYFQPIIETRTGNVVKFEALARFY 459

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD- 804
           H      S+ E + I E+L +I A++  + +   +     +       I + IN +    
Sbjct: 460 HENSEY-STQEMISIIEDLELIAALDDVVCQTALKQWSHLQKIYG-ENIGLSINRSLNTK 517

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L   ++ +    LI  +  +P  + +  +E+      E     L ++R+ GI + +DDFG
Sbjct: 518 LDSLQVLQRSLDLIKASDVNPKLVTIELTETAYFEQDEEHAFALEQIRQEGIQIAIDDFG 577

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S  SYL    FD +K +   +    E   +  I+++I  +A  +   ++A+ +  + 
Sbjct: 578 TGYSSFSYLEEGQFDVLKIDRKFVKNIHEGSTSYNIVKTITDLAHKLNVEVVAEGVESQR 637

Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946
           +++ L  +G DY+Q    +  L  
Sbjct: 638 ELEVLAGIGVDYMQGFLFSQALPV 661


>gi|332089840|gb|EGI94941.1| EAL domain protein [Shigella dysenteriae 155-74]
          Length = 413

 Score =  269 bits (688), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 173/427 (40%), Gaps = 21/427 (4%)

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           +PN ++    L                +  + I   + +    GI +       L+  + 
Sbjct: 4   LPNVRALNRALRDA---------PWSALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLS 54

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF 660
            LL+  + + +LSGN   + L +E++  +I      +++      + +  +  +  S  +
Sbjct: 55  PLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQ-FRFFWDGMPMQPQIGVSYCY 113

Query: 661 ASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
                + I     E+   AEL++            +  +     D+V +   L  A+E++
Sbjct: 114 VRSPVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRLQQALEHN 173

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
              L+  PI  +  +  V  E L++        I    F+ +A E  +  +I+++++E  
Sbjct: 174 HFSLMAQPITGMRGD--VYHEILLRMKGENDELIGPDSFLPVAHEFGLSSSIDMWVIEHT 231

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            + +   R +         +N++   +        +  L++K      ++    +ES  +
Sbjct: 232 LQFMAENRAKMPAH--RFAMNLSPTSVCQARFPVEVSQLLAKYQIEAWQLIFEVTESNAL 289

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            N +++++ L  L+++G  + +DDFGT  +  + L  +  D +K +GS +          
Sbjct: 290 TNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRNIVSNSLDY 349

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            I+ SI  +A+  +  ++A+ +  E   + +  +G DY+Q   +  P     ++  L E 
Sbjct: 350 QIVASICHLARMKKMRVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQP---LIDTLNEI 406

Query: 957 FPLVKNT 963
            P+ ++ 
Sbjct: 407 EPIRESA 413


>gi|168215055|ref|ZP_02640680.1| putative diguanylate cyclase [Clostridium perfringens CPE str.
           F4969]
 gi|170713517|gb|EDT25699.1| putative diguanylate cyclase [Clostridium perfringens CPE str.
           F4969]
          Length = 507

 Score =  269 bits (688), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 177/425 (41%), Gaps = 16/425 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R    + L               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFELKNNLEMW--------KGEYTLFLIDLRKFSLINDALGRDKGDEVLREF 138

Query: 596 TRRIGELLKFPDI--LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            + +  + K      L  + G    ++ I+  N   I +    +     + +N L +EI 
Sbjct: 139 GKGLNNISKSLASKNLYGVYGGEKFLVAINSKNKEDIIEVLNKLDNLRKIRLNSLNKEIK 198

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDL 711
           +  +IG++       +  E+++    A   AK     +V  +        +    I  D+
Sbjct: 199 MEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEDFIYVIEYTEELRSIRKKNNLIIRDI 257

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+ N +LY VY P I  +D++I G E LI+W+H   G+IS+S+ +   EE+  IK ++
Sbjct: 258 KDALINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDLD 317

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           L++ E             N   +   +NI+   L    +   +  +       P  I L 
Sbjct: 318 LYVFESTCEFQSRLIQ--NNIELQCSVNISINTLKHRGVGSNLYKISKNYNLKPENITLE 375

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++  
Sbjct: 376 ILENADLEVRGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISDI 435

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     L
Sbjct: 436 PNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEFL 495

Query: 951 KLLKE 955
           + +  
Sbjct: 496 EYVNN 500


>gi|218889891|ref|YP_002438755.1| hypothetical protein PLES_11491 [Pseudomonas aeruginosa LESB58]
 gi|218770114|emb|CAW25876.1| putative membrane protein [Pseudomonas aeruginosa LESB58]
          Length = 523

 Score =  269 bits (688), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 3/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 263 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++A D+         P   I  NI++    +  L +  + L++        +
Sbjct: 323 PMTRALMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFI 441

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 442 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 501

Query: 947 NSILKLLK 954
            S+L  L 
Sbjct: 502 ESLLSSLA 509


>gi|294624557|ref|ZP_06703233.1| phosphodiesterase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292601130|gb|EFF45191.1| phosphodiesterase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 230

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++W HP  G I   EF+ +AE   +I  +  F+L+   R    WR Q       + IN
Sbjct: 1   MLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDEALRCQAQWRKQGLQLG--MAIN 58

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           +++ DL D  L + ++  +         + L  +ES +M + E +  +L +LR +G+ L+
Sbjct: 59  LSALDLSDPGLPDFVRGCLEHHAVPAQSVTLELTESALMRDVEFALHMLHQLRSVGVRLS 118

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKD 917
           +DDFGT  S L+ L  +P D +K + S +    +      I+RS I +  N+  ++IA+ 
Sbjct: 119 IDDFGTGYSSLAQLKRMPVDELKIDKSFVMQLADGTDDAFIVRSTIDLGHNLGLSVIAEG 178

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           +     +  L   GCD +Q    + PL    ++     +  +    
Sbjct: 179 VENTTALALLRGYGCDMVQGYLYSPPLEEAPLVAWCMRQLGMSTPA 224


>gi|317064978|ref|ZP_07929463.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690654|gb|EFS27489.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 912

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 175/383 (45%), Gaps = 21/383 (5%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D LTG+ N +SF++         +  +     ++  DI+  K++ND  G   GD++++
Sbjct: 546 YHDMLTGLSNHKSFVE----YKWNRSFHNYASLGLITSDINGLKQLNDKYGPLFGDEMII 601

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
                  +     + L RLSG+ F ++  + +N   I +      +          R ++
Sbjct: 602 KTAHIFKKYF-PEEKLFRLSGDEFLVVCENIDNETFIRNIDNIKLEFSN----FENRGLS 656

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           +  S     W   +I    + KNAE  MY  K +   +          +    +  ++  
Sbjct: 657 IGYS-----WADDEIDFDVLHKNAEELMYIDKQKYYQNTNFTSKHYRPALLQKLLAEI-- 709

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
             +N+E ++   P+I L  +++ G EALI+  +         +F+ + E+  +I+ I+ F
Sbjct: 710 --KNNEYHVFLQPMIDLKTKKLSGTEALIRHINSDGVITPPIKFIPLLEKERLIRYIDFF 767

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + E + + +  W+ +     + I +N +   LL+++  + ++ + +K     S I++  +
Sbjct: 768 VFEEVCKTLHRWKSEGKKL-VPISLNFSRNTLLESDFVKTLKIIAAKYNVLRSLIEIEIT 826

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
           E++   + +    +   ++  G ++ LDDFG+K S +S    + FDT+K + SL+     
Sbjct: 827 ETIGEIDTKIISNISKEIKNAGFTIALDDFGSKYSNISLFTTLEFDTLKLDRSLVEKLQV 886

Query: 892 TEKRIAILRSIIPMAKNIETTII 914
           + ++  I+RS+I M K +    +
Sbjct: 887 SSEKKIIVRSVINMCKEMNVRTV 909



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 39/204 (19%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG- 443
           +++  +         +  +  +  LA+  +  I++++D+    +T        L +  G 
Sbjct: 69  SIVIDISDRKAIEDKLKFNQAKLKLAMNSTKCIIFEYDLDSKTLTH-------LRIPPGN 121

Query: 444 SMHGPIRNWLPY------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            + G I N          IH +  + +R + +S +     R     + R  + ++ W  I
Sbjct: 122 EIPGIIYNVPESRIKNNEIHPDHIETYRELYNSVLDG-NPRSCGTIKTRLKNTKYKWTKI 180

Query: 498 RIRPMSNSNGDILR-YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           ++  +   NG   R  IGI  DITE ++                      FL+   + L 
Sbjct: 181 KLNNII-INGIPTRKVIGIVEDITEHQEFQ--------------------FLNLFNSTLK 219

Query: 557 LSATDDNLRPTVMVIDIDKYKKIN 580
            +  +D++      ID+ + K  N
Sbjct: 220 KALLEDSMGYA--YIDLSEDKVSN 241



 Score = 44.6 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
             D    + IL +    +    ++E R+   + +   ++ +   +   +  I+    I  
Sbjct: 15  PEDISKVKAILKNAFENKLKNFEFEKRITTKNGEVRSLLTKGVFVKEGDEYIIN--SIVI 72

Query: 518 DITEQKKSLEG 528
           DI+++K   + 
Sbjct: 73  DISDRKAIEDK 83


>gi|257470773|ref|ZP_05634863.1| diguanylate cyclase/phosphodiesterase [Fusobacterium ulcerans ATCC
            49185]
          Length = 1231

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 175/383 (45%), Gaps = 21/383 (5%)

Query: 534  FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            + D LTG+ N +SF++         +  +     ++  DI+  K++ND  G   GD++++
Sbjct: 865  YHDMLTGLSNHKSFVE----YKWNRSFHNYASLGLITSDINGLKQLNDKYGPLFGDEMII 920

Query: 594  SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
                   +     + L RLSG+ F ++  + +N   I +      +          R ++
Sbjct: 921  KTAHIFKKYF-PEEKLFRLSGDEFLVVCENIDNETFIRNIDNIKLEFSN----FENRGLS 975

Query: 654  VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
            +  S     W   +I    + KNAE  MY  K +   +          +    +  ++  
Sbjct: 976  IGYS-----WADDEIDFDVLHKNAEELMYIDKQKYYQNTNFTSKHYRPALLQKLLAEI-- 1028

Query: 714  AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              +N+E ++   P+I L  +++ G EALI+  +         +F+ + E+  +I+ I+ F
Sbjct: 1029 --KNNEYHVFLQPMIDLKTKKLSGTEALIRHINSDGVITPPIKFIPLLEKERLIRYIDFF 1086

Query: 774  MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
            + E + + +  W+ +     + I +N +   LL+++  + ++ + +K     S I++  +
Sbjct: 1087 VFEEVCKTLHRWKSEGKKL-VPISLNFSRNTLLESDFVKTLKIIAAKYNVLRSLIEIEIT 1145

Query: 834  ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GS 891
            E++   + +    +   ++  G ++ LDDFG+K S +S    + FDT+K + SL+     
Sbjct: 1146 ETIGEIDTKIISNISKEIKNAGFTIALDDFGSKYSNISLFTTLEFDTLKLDRSLVEKLQV 1205

Query: 892  TEKRIAILRSIIPMAKNIETTII 914
            + ++  I+RS+I M K +    +
Sbjct: 1206 SSEKKIIVRSVINMCKEMNVRTV 1228



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 429 TTTPDIATILGLASGS--MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
                +   LG  S    +       +  IH  DRD+   ++++ +  +    + E+R++
Sbjct: 181 FVNDQLLKKLGYKSQEEFIEDTGGLVINGIHPEDRDHVCKVVEASLKLK-EEYEVEYRMK 239

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
            ++  + W++ R R +   NG +   + I  DITE+ +  +
Sbjct: 240 KSNGSYIWVLDRGRLVQTENGPV--IVSICFDITEKVQLQQ 278



 Score = 58.0 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRL 479
           +D     +        + G     M   + N  +      D    + IL +    +    
Sbjct: 296 FDEDFTVIYGNDGFYKLYGYTPEEMKILLGNKLIAVTFPEDISKVKAILKNAFENKLKNF 355

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
           ++E R+   + +   ++ +   +   +  I+    I  DI+++K   + 
Sbjct: 356 EFEKRITTKNGEVRSLLTKGVFVKEGDEYIIN--SIVIDISDRKAIEDK 402



 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 39/204 (19%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG- 443
           +++  +         +  +  +  LA+  +  I++++D+    +T        L +  G 
Sbjct: 388 SIVIDISDRKAIEDKLKFNQAKLKLAMNSTKCIIFEYDLDSKTLTH-------LRIPPGN 440

Query: 444 SMHGPIRNWLPY------IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            + G I N          IH +  + +R + +S +     R     + R  + ++ W  I
Sbjct: 441 EIPGIIYNVPESRIKNNEIHPDHIETYRELYNSVLDG-NPRSCGTIKTRLKNTKYKWTKI 499

Query: 498 RIRPMSNSNGDILR-YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           ++  +   NG   R  IGI  DITE ++                      FL+   + L 
Sbjct: 500 KLNNII-INGIPTRKVIGIVEDITEHQEFQ--------------------FLNLFNSTLK 538

Query: 557 LSATDDNLRPTVMVIDIDKYKKIN 580
            +  +D++      ID+ + K  N
Sbjct: 539 KALLEDSMGYA--YIDLSEDKVSN 560


>gi|332532403|ref|ZP_08408281.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038046|gb|EGI74493.1| GGDEF family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 246

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 115/236 (48%), Gaps = 3/236 (1%)

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
            A++N+   +VY P++ L   ++VG E+L++   P++G +   EF+   E+  MI  +  
Sbjct: 3   DAMQNNYFKMVYQPLVSLGTGKLVGFESLVRCQSPRFGVVGPDEFIPHVEQSGMILELGD 62

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
           ++ E+   D+   R    M  I + +NI+   +LD ++   +  L+ K    P  IK+  
Sbjct: 63  WIFEQCLSDLKHMR-HFGMTDISVSLNISPVQILDGDVFSKVMYLLEKYQIPPQAIKVEL 121

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
           +E+ ++ +PE+         K G+ + +DDFGT  + L  L     D +K + S ++G +
Sbjct: 122 TETALIHSPEKIAKAFENFHKEGVKVWIDDFGTGYASLGLLRQFNIDGLKIDRSFVSGIS 181

Query: 893 EKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                  +  +II MA+ +    +A+ I     ++ L ++GCD  Q   +  P   
Sbjct: 182 TNNEDFTLCSAIIAMAQRLGLQTVAEGIEENEQLQILEQLGCDIAQGYLLDKPQTL 237


>gi|325168567|ref|YP_004280357.1| diguanylate phosphodiesterase [Agrobacterium sp. H13-3]
 gi|325064290|gb|ADY67979.1| diguanylate phosphodiesterase [Agrobacterium sp. H13-3]
          Length = 457

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 3/259 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                  R+ ++ +L  AV N E+ + + P +R     + G EAL++W HP    +S   
Sbjct: 191 YRIDSGKRLRLERELGRAVRNGEIEVYFQPQVRG-SGIVTGAEALVRWRHPSGKLLSPDA 249

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AEE  +I  I L +L +    +  W D      + + +NI+   L D  L   +  
Sbjct: 250 FIDLAEESTLICEIGLEVLRQACETLRHWSDNPRTQALRLAVNISPVQLQDTSLVSSVSR 309

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           +I +    PS ++   +E+ +  +       +  L   G S  LDDFGT  S L+ L  +
Sbjct: 310 IIREAGIDPSLLEFELTETALATDTAAVLERMEVLASSGASWALDDFGTGYSSLATLRTL 369

Query: 877 PFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P   +K +   +      E+   +L  II ++  ++   +A+ +      + LTR+GCD+
Sbjct: 370 PVRKLKIDRQFLIEATRQERAQRLLGKIIEISHVMDMCALAEGVETPDQRELLTRLGCDH 429

Query: 935 IQDSHVASPLGFNSILKLL 953
            Q    A P+    + + L
Sbjct: 430 FQGYLFAQPMPREELNRWL 448


>gi|325496467|gb|EGC94326.1| hypothetical protein ECD227_0564 [Escherichia fergusonii ECD227]
          Length = 700

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 182/449 (40%), Gaps = 24/449 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+  +  I   A+ D +  +PN +S    L +              +
Sbjct: 259 IINYMAVLA--TRQRAVVNRIRRLAYFDPVVHLPNIRSLNRTLASA---------PWSVI 307

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    GI +      +++  +  +L+  + + +LSGN   + L +E +  
Sbjct: 308 CYLRVPGMEMLVKNYGIMLRIQYKQNISHWLAPMLEKDEYVYQLSGNDLALRLNTEGHQE 367

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHA 684
           +I      ++             +     I +    S       +L      AEL++   
Sbjct: 368 RIEAIDKHLKNF---RFMWDGMPLQPQIGISYCYVRSPVNHIYLLLGELSTVAELSIATN 424

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  V     D+V +   L  A+E+    L+  PI+ +  +  V  E L++ 
Sbjct: 425 APESMQRRGAMHVQRDLKDKVAMMNRLQQALEHDRFCLMAQPIVGVRGD--VYHEILLRM 482

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
           +    G I+   F+ +A E  +  AI+L+++E   + +   R++         IN++   
Sbjct: 483 EDDANGRINPDIFLPVAHEFGLSSAIDLWVIEHTLQFMAVNREKIPAQ--RYAINLSPTS 540

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +    L E ++ L++K      ++    +ES  + N E+++  L +L+++G  + +DDFG
Sbjct: 541 VCRQRLPEEVRHLLTKYQIEAWQLIFEVTESNALTNMEQAQNTLLQLQELGCRIAIDDFG 600

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E 
Sbjct: 601 TGYASYARLKNVNADIMKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEYVENED 660

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +    +G DY Q +        N I+ 
Sbjct: 661 IHQAALSLGIDYFQGNFFGEAKPLNEIVA 689


>gi|149186942|ref|ZP_01865251.1| diguanylate phosphodiesterase [Erythrobacter sp. SD-21]
 gi|148829451|gb|EDL47893.1| diguanylate phosphodiesterase [Erythrobacter sp. SD-21]
          Length = 780

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/432 (20%), Positives = 174/432 (40%), Gaps = 16/432 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +         A  DN TG+        +L  +      D ++R  ++V  I  Y+ +   
Sbjct: 352 RSRARWKDRMALVDNETGL-------QKLRALEAKVTQDIHMRGHLVVARIHGYEYVFKT 404

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           L  A     ++ L  R+         LA  S          + +  ++A+    +R   A
Sbjct: 405 LPRAHRAQYILKLVDRLRAT---DGNLAIYSEGHHLAWHSKQEDGDRLAEHLEGLRAMFA 461

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            PI +    I V  S G A                  A   ++      +          
Sbjct: 462 APIIVAGSSIDVGISFGVAKLDGDPAVRLAAAVA--AAEESSEALQPIKIAESSSRFDEL 519

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             + ++  +  A+   E++ VY P +   +  + G+EAL++W  P  G I    F+   E
Sbjct: 520 WDISLRARIDEAMSAGEIFCVYQPKVDTRNGNMTGVEALVRWQDPARGFIPPMHFIAQCE 579

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +   + A+  F+ E                 I + INI++  L D ++   ++ ++  T 
Sbjct: 580 KAGRMDALTEFVFEHAC--AAGRLMHFRGRSITMSINISATLLSDMKIVGMVRNVLQATG 637

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
           + P  + L  +E+  +GN E + ++L  L+ +G  +++DDFG   +       +PFD +K
Sbjct: 638 FDPRFLILEVTETSRIGNLETAEMVLNELKSLGTRISMDDFGVGETNFETFFELPFDELK 697

Query: 883 FNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +     + K  AI+ S++ M ++    ++A+       +K LT MGC ++Q   +
Sbjct: 698 IDRLFIANMAKSSKAKAIVSSVVQMGRDARIGVVAEGAEDAETLKMLTEMGCTHVQGYIL 757

Query: 941 ASPLGFNSILKL 952
           A P+  +++L+L
Sbjct: 758 ARPMSLDNLLQL 769


>gi|302525961|ref|ZP_07278303.1| predicted protein [Streptomyces sp. AA4]
 gi|302434856|gb|EFL06672.1| predicted protein [Streptomyces sp. AA4]
          Length = 622

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/568 (19%), Positives = 224/568 (39%), Gaps = 26/568 (4%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
           R +     +   +   D     V   P +A +LG ++ ++       L      D +  R
Sbjct: 62  RFTALFSSAPLGIALTDPSGAVVEANPALARLLGTSTTALRDKHIADLAA-GPQDAERLR 120

Query: 466 TILDSF-VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             L+   +     R     ++  + +      + +  +          + +A D  +   
Sbjct: 121 AALEGLPLTADARRTVQSVQLGHSRDGELTTNVTLASLPGDRPGTYFPVFMAADDDDLHL 180

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +      D+LTG+PN  +F  +L   L    +  +    ++ +DID +K IND LG
Sbjct: 181 LGERLRHQNLHDSLTGLPNSAAFNAQLELAL---GSGGSDEIALLYLDIDGFKVINDGLG 237

Query: 585 IAVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSI 641
             +GD VL +++R++  +   +    +ARLSG+ F ++L      + +  + A  + + +
Sbjct: 238 AGMGDLVLKAISRKLKSVFAGQHDGYVARLSGDGFAVLLRGPELTAQETVELADRVLEEL 297

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS--S 699
           + P+ +    I V+ASIG     +++ T  ++L+ AELA++ AK  G      F      
Sbjct: 298 SEPVYVDGHGIGVSASIGIVVRPANEGTHGDLLRAAELALHRAKEAGKAQWMLFDPQLDE 357

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
               R  +   +  A+EN E  L+Y P +     +EI  + A + W HP+ G +   EF 
Sbjct: 358 RDRSRYQLGAVIAGALENGEFSLIYQPTVKLAKPDEIAAVNAGLLWSHPERGELGPEEFY 417

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +A+   M   +  ++L+        WR+Q       + I +  +  +D +L   ++  +
Sbjct: 418 PLAQTTGMTIPLGKWLLQESLGATARWREQYGPAAPDVCIRLPKRLAIDPDLVLLVKNQL 477

Query: 819 SKTLYSPSRIKLSFSESVVMGNPE-RSRLLLGRLRKIGISLT--LDDFGTKCSLLSYL-- 873
            +       ++L  ++   M + E         L  +G  L   +    T  S L  +  
Sbjct: 478 DRHRLPARALRL-CTDRASMFDGEGELLDSFSVLADLGAQLVLTI----TGSSDLELIPR 532

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPM---AKNIETTIIAKDIYGEIDIKELT 928
             +P   V  +G ++        A   +R +  +   AK +   I A+ +        L 
Sbjct: 533 YQLPVKHVILSGPVVDALAGPDPAETDVRHLSQLVTRAKELGLRIGAEGVRDAAHAARLR 592

Query: 929 RMGCDYIQDSHVASPLGFNSILKLLKER 956
             G    + S V      + + +++   
Sbjct: 593 EQGVLAARGSFVTESATGDEVDEMIARH 620


>gi|254498802|ref|ZP_05111513.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12]
 gi|254351966|gb|EET10790.1| hypothetical protein LDG_2883 [Legionella drancourtii LLAP12]
          Length = 815

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 4/316 (1%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           ++  + + ++       + +    ER    +  +   +    +    +     +  I G 
Sbjct: 503 VMNRSTMFNITDRKRTERALLESEERFRNIMDHAPIGMATQSLEGQFLLVNRALCEITGY 562

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +      +    +  D           +  +      E R    D    W+ +   
Sbjct: 563 KKEELEQ--LTFQKITYPEDLILELENTRKLIEGKNSSYHVEKRQIRKDGTISWIQVTRS 620

Query: 501 PMSNS-NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
            + ++ +G+ + +I    DI E+  + E I   A+ D LTG+PNRQ  LDRL   +  + 
Sbjct: 621 ILRDTTSGEPIYFILQVEDINERIINREKIYQLAYHDILTGLPNRQLLLDRLNQAIASAK 680

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
                   +M +D+DK+K +ND LG   GD +L  ++ R+   ++  D +AR  G+ F I
Sbjct: 681 HHHRF-MALMFVDLDKFKHVNDTLGHDAGDKLLKEMSTRLCCSVRSQDTIARTGGDEFVI 739

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           IL   ++    A  A    K +  P++L ++++ +TASIG A + ++ + ++E++K A++
Sbjct: 740 ILTEISSPQDAAILADKFLKIVKKPLSLQDQQLQITASIGIAIYPNNGLDAAELMKKADM 799

Query: 680 AMYHAKHRGGNHVESF 695
           AMY +K  G +    +
Sbjct: 800 AMYMSKDAGRDRWHFY 815



 Score = 87.7 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 3/148 (2%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++ +       + +    E     V  +   +    I    +     +  I G    
Sbjct: 251 IAQVEDISERKQIEKTLRQSKELFQNIVDNAPIGIATVSIDGHFIQVNSSLCKITGYNQE 310

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      +    +  D       +   +  +    Q E R    D +  W+ +    + 
Sbjct: 311 EL--TKLTYQELTYPEDLSTNFAKVQHLLEGKASSYQIEKRYVRKDGKVIWVQVTRSLLR 368

Query: 504 NS-NGDILRYIGIANDITEQKKSLEGIL 530
           N   G  L +I    DI+E+K   E + 
Sbjct: 369 NQLTGTPLYFIAQVEDISERKTVTEKLQ 396



 Score = 76.9 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 3/145 (2%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
           L     I+ + +     + +          +  +   V    +    +        I G 
Sbjct: 120 LYFIAQIEDITSRKQAEKALQESENLFRNVIDNAPVGVVTISLDGQLLKVNQAYCHITGY 179

Query: 441 ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
               +     ++    +  D       +   +  +      E R    D++  W+ +   
Sbjct: 180 EKEELEN--MSYKKLTYAEDMTIDTANVQQLLEGKIHSYCLEKRYIRKDDKTIWVQVTRS 237

Query: 501 PMSNS-NGDILRYIGIANDITEQKK 524
            + +S  G    +I    DI+E+K+
Sbjct: 238 LLRDSTTGMPSYFIAQVEDISERKQ 262



 Score = 65.4 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 25/181 (13%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
            V  +   +    I    +        I G     +     ++    +  D       + 
Sbjct: 21  IVDNAPVGIATLSIDGHFMQVNQAFTEITGYERSELET--MSYQQLTYNEDCAIDDFNIQ 78

Query: 470 SFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSLEG 528
             +  +    + E R    D++  W+ +    M N      L +I    DIT +K++ E 
Sbjct: 79  QLLNNKVKSYRLEKRYIRKDDKIIWVQVTRSIMRNPITKKPLYFIAQIEDITSRKQA-EK 137

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK-YKKINDVLGIAV 587
            L  +             F + +                V+ I +D    K+N       
Sbjct: 138 ALQESE----------NLFRNVIDNA----------PVGVVTISLDGQLLKVNQAYCHIT 177

Query: 588 G 588
           G
Sbjct: 178 G 178



 Score = 43.8 bits (102), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 46/168 (27%), Gaps = 2/168 (1%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
            ++    +  +L+   +    L     ++ +      ++ +    E  +     +     
Sbjct: 355 GKVIWVQVTRSLLRNQLTGTPLYFIAQVEDISERKTVTEKLQKSMEEIADLYANAPCGYH 414

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
             D               LG  +  + G ++ +   +             S    +    
Sbjct: 415 SLDANDFFTRINNTELNWLGYRADEIIGKMK-FSDLLTPASL-RIYQENASQFKEQGFLN 472

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             E  +   D     +++       S G  +       +IT++K++  
Sbjct: 473 DVEMELTRRDGSTFTILMSASGNKESGGRYVMNRSTMFNITDRKRTER 520


>gi|153833342|ref|ZP_01986009.1| ggdef family protein [Vibrio harveyi HY01]
 gi|148870351|gb|EDL69277.1| ggdef family protein [Vibrio harveyi HY01]
          Length = 814

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/583 (16%), Positives = 209/583 (35%), Gaps = 54/583 (9%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGS 444
           H++      Q   +  E  +  +    D     +   D     +         +G  +  
Sbjct: 104 HIVQGTVIPQLTITGSEELAKILETIFDLPNVGILIADQDTRILGCNRAFEQQMGYENRD 163

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGY--RRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           + G   N     H     + +   D       + G        R +        + I  +
Sbjct: 164 IIGLKTNIFSSDH-----HSQAFYDDMWEQIDQAGYWSGNLLSRTSKGNHQAHHLCIYRL 218

Query: 503 SNSNGDILRYIGIANDITE----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + ++G  L Y+G++ DI+      KK+ E     +       +P R  F  +L  +   +
Sbjct: 219 NFTSGRTL-YLGVSTDISASLLWMKKAGEQTQQYSAF-----LPPRDEFETQLGNL---A 269

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
             + N   ++++        +          +  +     +        I+ +LS + F 
Sbjct: 270 RENSNKDLSIVM-------ALRPCFSEKTALEQQLGFADFLMRSRHAS-IVGQLSKDVFA 321

Query: 619 IILISEN----NSLKIADFAIA-MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM 673
           + L +      + L++   A+      +   +     ++ +    G +            
Sbjct: 322 VCLQTPRCQWLSPLRLIQIALRGFFVELRSELGSSMHDVIIEGQTGISVLGYDTDNPKHA 381

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLM 731
           L +A  AM  ++    N+   +             ++  L   +E+  + + Y PII   
Sbjct: 382 LVHAAQAMISSRSDDQNYFSFYNSELHDELVKRSHLEAFLRAQIESQLVDVYYQPIIETR 441

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
             ++V  EAL ++ H       + E + + E+L +I A++  +  +  + +   +     
Sbjct: 442 SGKVVKFEALARFYHQNKTY-DTQEMIAMVEDLELIAALDDVVCRKALKQLTHIQKIYG- 499

Query: 792 PPIFILIN------IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSR 845
             + + IN      + +  +L + L      LIS++   PSRI +  +E+      +   
Sbjct: 500 EDVGLTINRSLNTKLDALQVLQSSL-----DLISESDVDPSRITIELTETAYFEQDQEHT 554

Query: 846 LLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSII 903
           + L  LR  GI + +DDFGT  S  SYL    FD +K +   +    E      I++ + 
Sbjct: 555 VALEELRGQGIKVAIDDFGTGYSSFSYLEKGHFDLIKIDRKFVKNIEEGSTKFNIVKMMT 614

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +A  +   ++A+ +  E ++K L  +G DY+Q    +  +  
Sbjct: 615 ELAHKLNVKVVAEGVESEQELKVLANVGVDYMQGYLFSQAVPL 657


>gi|328474686|gb|EGF45491.1| hypothetical protein VP10329_18325 [Vibrio parahaemolyticus 10329]
          Length = 818

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 204/564 (36%), Gaps = 48/564 (8%)

Query: 405 ERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           E  +  +    D     V   D     +         +G  +  + G         H + 
Sbjct: 124 EELAKILETIFDLPNVGVLVADEDTRILGCNRAFELQMGYQNRDLVGLKTYIFSTSHHS- 182

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F   L   +    G        R A+       + I  ++ ++G +L ++G + DI+
Sbjct: 183 -QAFYDQLWKHIDEE-GYWSGNLLSRTANGSNQAHHLCIYRLTFNSGRVL-FLGFSTDIS 239

Query: 521 E-----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
                 + +  +    +AF      +P R  F  +L  +   +    +    +++     
Sbjct: 240 ASLLWMKNRCEQVQDWSAF------LPTRDEFELQLDNL---ANESGHKDLNIVMTLRPN 290

Query: 576 YKK---INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----NSL 628
           + +   +   LG              I        I  +LS + F + L + +    + L
Sbjct: 291 FAQKCMLEQQLG----------FADFIMRSRY-TSIAGQLSRDVFVVCLQTPHCQWLSPL 339

Query: 629 KIADFAIA-MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK-- 685
           ++   A+      +   +        V    G +          + L +A  AM  +K  
Sbjct: 340 RLIQIAMKGFFSELRSEMGNKMHATIVEGQTGVSVLGYDTNNPKQALAHAAQAMVSSKAG 399

Query: 686 HRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
             G  +  +  + +    R  ++  L   +E+  + + + PII      +V  EAL ++ 
Sbjct: 400 ENGYFNFYNSELHAELVKRQHLETFLKTQIESELVDVYFQPIIETRTGNVVKFEALARFY 459

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD- 804
           H      S+ E + I E+L +I A++  + +   +     +       I + IN +    
Sbjct: 460 HENSEY-STQEMISIIEDLELIAALDDVVCQTALKQWSHLQKIYG-ENIGLSINRSLNTK 517

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           L   ++ +    LI  +   P  + +  +E+      E     L ++R+ GI + +DDFG
Sbjct: 518 LDSLQVLQRSLDLIKASDVKPKLVTIELTETAYFEQDEEHAFALEQIRQEGIQIAIDDFG 577

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEI 922
           T  S  SYL    FD +K +   +    E   +  I+++I  +A  +   ++A+ +  + 
Sbjct: 578 TGYSSFSYLEEGQFDVLKIDRKFVKNIHEGSTSYNIVKTITDLAHKLNVEVVAEGVESQR 637

Query: 923 DIKELTRMGCDYIQDSHVASPLGF 946
           +++ L  +G DY+Q    +  L  
Sbjct: 638 ELEVLAGIGVDYMQGFLFSQALPV 661


>gi|313650856|gb|EFS15256.1| EAL domain protein [Shigella flexneri 2a str. 2457T]
 gi|332755039|gb|EGJ85404.1| EAL domain protein [Shigella flexneri 4343-70]
 gi|332755443|gb|EGJ85807.1| EAL domain protein [Shigella flexneri K-671]
 gi|332756397|gb|EGJ86748.1| EAL domain protein [Shigella flexneri 2747-71]
 gi|333001811|gb|EGK21377.1| EAL domain protein [Shigella flexneri K-218]
 gi|333016269|gb|EGK35600.1| EAL domain protein [Shigella flexneri K-304]
          Length = 505

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 93  WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 143

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 144 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 200

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 201 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 260

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 261 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 317

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 318 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 375

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 376 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 435

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 436 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 495

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 496 LIGRPQPLAD 505


>gi|313109244|ref|ZP_07795212.1| putative membrane protein [Pseudomonas aeruginosa 39016]
 gi|310881714|gb|EFQ40308.1| putative membrane protein [Pseudomonas aeruginosa 39016]
          Length = 526

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 3/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 263 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++A D+         P   I  NI++    +  L +  + L++        +
Sbjct: 323 PMTRALMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFV 441

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 442 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 501

Query: 947 NSILKLLK 954
            S+L  L 
Sbjct: 502 ESLLSSLT 509


>gi|254238327|ref|ZP_04931650.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126170258|gb|EAZ55769.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 691

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 94/543 (17%), Positives = 204/543 (37%), Gaps = 14/543 (2%)

Query: 406 RQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIRNWLPYIHINDRDNF 464
           R  L +  S D +  +      +        + G   +  + G     +  I   D+  F
Sbjct: 145 RCQLLLDSSVDAI-TYVHDGMHIYANRSYMALFGYEDAEELEGLP--VIDLIASCDQGAF 201

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
           +  L  +   +R   +        D Q     I +   +  +G+    + I  ++ +  +
Sbjct: 202 KDFLKGYQNDQRQT-ELVCTGVKLDGQEFKARISLSA-ATYDGEPCIQVVIRGEV-DNAE 258

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E +   + QD +TG+ NR  FLD +   +  + T      T+  I ++ Y  +    G
Sbjct: 259 LEEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPS-TLAYIHLNGYPSLQADHG 317

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           ++  D +L  L   + E       LAR   + F  +   +      A     ++K     
Sbjct: 318 LSGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHL 377

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
             L  R    T SIG A        + +++  A      A  +GG+ ++ +  +   +  
Sbjct: 378 FELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQIKQYNPAEELAAA 437

Query: 705 VM---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                +   L  A+E +   L++ P+I L  +     E L++  +P+   +  +EF+  A
Sbjct: 438 AQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAA 497

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +E  + + I+ +++    + +   R + +   +F+   ++S  L D  L   +   +   
Sbjct: 498 KEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVH--LSSASLQDPGLLPWLGVALKAA 555

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  +    SE+      ++++ L   L  +     +  FG   + ++ L ++    +
Sbjct: 556 RLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPVNALKHLTVQFI 615

Query: 882 KFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +GS +    + +   IL+ +I      +   I   +     +  L + G  YIQ  ++
Sbjct: 616 KIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYL 675

Query: 941 ASP 943
             P
Sbjct: 676 QGP 678


>gi|110798720|ref|YP_695710.1| putative diguanylate cyclase [Clostridium perfringens ATCC 13124]
 gi|110673367|gb|ABG82354.1| putative diguanylate cyclase [Clostridium perfringens ATCC 13124]
          Length = 507

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 178/426 (41%), Gaps = 18/426 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D L+ +  R  F + +               T+ +ID+ K+  IND LG   GD+VL   
Sbjct: 87  DPLSNVFTRFEFKNNIEMW--------KGEYTLFLIDLRKFSLINDALGRDKGDEVLREF 138

Query: 596 TRRIGEL---LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
            + +  +   L   ++     G  F + + S  N   I +    +     + +N L +EI
Sbjct: 139 GKGLNNISKSLASKNLYGVYGGEEFLVAINS-RNKEDIIEVLNKLDNLKKIRLNSLNKEI 197

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF--RSDRVMIKED 710
            +  +IG++       +  E+++    A   AK      V  +       R    +I  D
Sbjct: 198 KMEFNIGYS-INLGNKSFEEIIEEVFFAKERAKKEAFISVIEYTEELKGIRKKNNLIIRD 256

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  ++ N +LY VY P I  +D++I G E LI+W+H   G+IS+S+ +   EE+  IK +
Sbjct: 257 IKDSLINKKLYTVYQPQISSLDDKIKGYETLIRWNHETLGSISASDIVKTLEEIDAIKDL 316

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L++ E             N   +   +NI+   L    +   +  +       P  I L
Sbjct: 317 DLYVFESTCEFQSRLIQ--NNIELQCSVNISINTLKHRGVGSNLYKISKNYNLKPENITL 374

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  +     +   + +L+K G  +++DDFG   S ++ +  IPFD +K     ++ 
Sbjct: 375 EILENSDLEVSGNAINEIIKLKKYGFKISIDDFGKGYSSINRVLKIPFDQIKIPKDFISD 434

Query: 891 S-TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               K IAI+ SI   AK +   ++ + +  +        +  D IQ  + +  L     
Sbjct: 435 IPNSKYIAIINSISNFAKTLGAELVIEGVESKEYYDFFKLLDFDVIQGFYFSKALNEKEF 494

Query: 950 LKLLKE 955
           L+ +  
Sbjct: 495 LEYVNN 500


>gi|15599020|ref|NP_252514.1| hypothetical protein PA3825 [Pseudomonas aeruginosa PAO1]
 gi|254242516|ref|ZP_04935838.1| hypothetical protein PA2G_03267 [Pseudomonas aeruginosa 2192]
 gi|9950000|gb|AAG07212.1|AE004800_1 hypothetical protein PA3825 [Pseudomonas aeruginosa PAO1]
 gi|126195894|gb|EAZ59957.1| hypothetical protein PA2G_03267 [Pseudomonas aeruginosa 2192]
          Length = 526

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 3/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 263 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++A D+         P   I  NI++    +  L +  + L++        +
Sbjct: 323 PMTRALMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFV 441

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 442 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 501

Query: 947 NSILKLLK 954
            S+L  L 
Sbjct: 502 ESLLSSLT 509


>gi|227825160|ref|ZP_03989992.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905659|gb|EEH91577.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 697

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 165/408 (40%), Gaps = 18/408 (4%)

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           ++L   L         +   + +D++ ++ IN    I+ G  +L  ++  I +      +
Sbjct: 30  EQLQKEL----LQQGKKACYIFLDLENFRFINMQGDISEGAHLLTEVSALIHQTF-PDAL 84

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + R +  +F ++    +   ++           +        ++ + A I   S     I
Sbjct: 85  ITRGASIQFAVVTGVPDVRERLIHLHKKALSLRS------NNQLDLKAGIFIVSNPQ--I 136

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHP 726
           +       A+ A  H K         +     +   +   +   L  A++N ++ + + P
Sbjct: 137 SPITASDYAKAACAHIKKDYQAVYREYDEDLQKHLAIDHYVVTHLEEALKNHDIKVFFQP 196

Query: 727 IIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWR 786
           IIR +  +    EAL +WD P++G++  S F+   E   +I  ++L++ E + R     +
Sbjct: 197 IIRTLTCKACAAEALARWDDPQYGHLLPSIFIKPLEATQLITKLDLYVAEEVCRLYEDLQ 256

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  + I IN +  D  + E+   +  L ++       + +  +E     +    + 
Sbjct: 257 -LRPDVNLPISINFSRSDFQNCEIRRELDRLRAEYHVPDHALCVEVTERDFCDDVSVLKD 315

Query: 847 LLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIP 904
            +  LR  G  + +DDFG+  S LS L  +  D VKF+   + GS        I+ ++I 
Sbjct: 316 QIKDLRDHGYEVWMDDFGSGFSSLSLLKDLDVDLVKFDLRFLVGSAHINRGNFIIGALIA 375

Query: 905 MAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           M K +    + + +  E  ++ L  +GC+ +Q    + P+ F  +L L
Sbjct: 376 MVKQLGMKTLVEGVETEAQLEYLQSVGCERMQGYLYSRPIPFAQLLDL 423


>gi|86609610|ref|YP_478372.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558152|gb|ABD03109.1| sensory box protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 671

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 139/316 (43%), Gaps = 11/316 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA-S 442
            ++   +       + +    ER       + + ++  D     ++  P +A I G +  
Sbjct: 348 VSLALEISERRQVEEELRQAEERYRNFFENAVEGIFFTDAAGRYLSANPMLAQICGYSSP 407

Query: 443 GSMHGPIRNWLPY---IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
             +    +        +  +  + F  +L      R     +E+R+R  D    W+  + 
Sbjct: 408 EELMREAKEAGKRQLYVDPSQWEEFVRLLQEQGSVRG----FEYRLRRRDGSIIWVREKA 463

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           R + +  G++L Y GI  DIT QK+SL  +   A  D LTG+ NR+SF +RL   L    
Sbjct: 464 RLVKDKAGNLLGYEGICEDITAQKQSLAYMEFRAHHDALTGLVNRESFRERLQQTL---Q 520

Query: 560 TDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGI 619
              +    +  +D+D +K IND  G +VGD +L  +  R+ + ++  DI+AR  G+ F +
Sbjct: 521 QYYSECLALFFVDLDHFKDINDTFGHSVGDALLQGVAERLTKCVRPGDIVARWGGDEFTL 580

Query: 620 ILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAEL 679
           +L    +S   A  A  +      P +     ++VT SIG A +    +  S +L +A+L
Sbjct: 581 LLPRIGSSTVAARLAQRIVDVFQTPFSCEGHSLSVTCSIGVALYPQDGVEVSTLLHHADL 640

Query: 680 AMYHAKHRGGNHVESF 695
           A+Y  K  G +    +
Sbjct: 641 ALYQVKENGRSGFRLY 656


>gi|107103345|ref|ZP_01367263.1| hypothetical protein PaerPA_01004414 [Pseudomonas aeruginosa PACS2]
          Length = 508

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 3/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 245 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 304

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++A D+         P   I  NI++    +  L +  + L++        +
Sbjct: 305 PMTRALMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITL 363

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 364 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFV 423

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 424 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 483

Query: 947 NSILKLLK 954
            S+L  L 
Sbjct: 484 ESLLSSLT 491


>gi|269959653|ref|ZP_06174033.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835576|gb|EEZ89655.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 818

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 104/579 (17%), Positives = 217/579 (37%), Gaps = 46/579 (7%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGS 444
           H++      Q   +  E  +  +    D     +   D     +         +G  +  
Sbjct: 108 HIVQGNVIPQLSITGCEELAKILETIFDLPNVGILVADQETRILGCNRAFEQQMGYENRD 167

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G   N     H + +  +  I +     + G        RA++       + I  ++ 
Sbjct: 168 IVGLKTNIFSSDH-HSKAFYDDIWEQI--GQEGYWSGNLLSRASNGSNQAHHLCIYRLNF 224

Query: 505 SNGDILRYIGIANDITE----QKKSLEG-ILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
           ++G  L ++G + DI+      KK+ E     +AF      +P R  F  +L  +   + 
Sbjct: 225 TSGRTL-FLGFSTDISASLLWMKKAGEQAQQWSAF------LPPRDEFESQLANL---AR 274

Query: 560 TDDNLRPTVMVIDIDKYKKIN---DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
            + N    +++     + + N     LG  + D ++ S    I   L     +  L   R
Sbjct: 275 ENGNKDLNIVMTLRPNFSRKNLLEQQLG--LADFMMRSRHASIAGQLSKDVFVVCLQTPR 332

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
              +       + +  F + +R  +   +     ++ V    G +          + L +
Sbjct: 333 CQWLSPLRLIQIALRGFFVELRSELGSSM----HDVIVEGKTGVSVLGYDTNNPRQALVH 388

Query: 677 AELAMYHA--KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
           A  AM  A    +      +  +      R  ++  L   +E+  + + + PII     +
Sbjct: 389 AAQAMVSAPTGDQSYFSFYNSDLHDELVKRHHLEAFLRTQIESQLVDVYFQPIIETRTGK 448

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP-P 793
           IV  EAL ++ H       + E + + E+L +I A++  +     + +   +        
Sbjct: 449 IVKFEALARFYHQNKTY-DTQEMISVVEDLELIAALDDVVCRTALKQLPHIQKVYGEEIG 507

Query: 794 IFI--LIN--IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLG 849
           + +   +N  + S  +L + L      LI+++   PSRI +  +E+      +   + L 
Sbjct: 508 LTLNRSLNTKLDSLQVLQSSL-----DLIAESGVDPSRITIELTETAYFEQDQEHTVALE 562

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAK 907
            LR  GI + +DDFGT  S  SYL    FD +K +   +    E   + +I++ I  +A 
Sbjct: 563 ELRGQGIKIAIDDFGTGYSSFSYLEKGQFDLLKIDRKFVKSIEEGSTKYSIVKMITELAH 622

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            +   ++A+ +  E ++K L  +G DY+Q    +  +  
Sbjct: 623 KLNVKVVAEGVESEEELKVLASVGVDYMQGFLFSQAIPV 661


>gi|317471742|ref|ZP_07931082.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900765|gb|EFV22739.1| EAL domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 812

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 169/403 (41%), Gaps = 22/403 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   ++QD++TG+ NR S+       L+       +   V+ +DI+  K +ND  G   
Sbjct: 381 KLEQMSYQDSMTGLENRNSYTQYCGDFLEGRP----VPAGVIFMDINGLKIMNDKKGHMY 436

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD ++  +  ++ +         RLSG+ F I+                M  ++   ++ 
Sbjct: 437 GDILIGYIANKMKQFFPEGRKF-RLSGDEFLIVTERIE-----YSKFRTMLSAMEKSLSE 490

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI 707
             R I    S+G + W+  +    E++  AE  M   K     H       +  +++V +
Sbjct: 491 DGRCI---VSVGTS-WSDVQEDLPELVNKAERLMTINK-----HDYYRENKNIAAEKVPL 541

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L  ++   E  +   P + +   +I   E L+++       +S  +F+ + E   +I
Sbjct: 542 LRELLGSIVKKEFLVYLQPKLHVKTGQIDSAEVLVRYREKDGSIVSPFKFVPLLESERLI 601

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I+ F++E   R +  W    ++  + + +N +   L D+   E    +  K    P +
Sbjct: 602 SYIDFFVMEEACRLLTKW-KNTSLSDMKLALNFSGITLFDDHFFENFCKIFGKYDLKPDQ 660

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E+    N ++   LL +L+  G  + LDDFG + S   +L    FD +K +  +
Sbjct: 661 LELEITETQETLNKKQMAYLLKQLKNYGFCIALDDFGVEYSSYEFLMMASFDILKIDKGI 720

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           +     ++K   +++ II M+  I     A+ +  E     + 
Sbjct: 721 IQKYQKSDKGDILVKHIIQMSHAIGIQCCAEGVETEEHFAIIR 763


>gi|289207714|ref|YP_003459780.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
 gi|288943345|gb|ADC71044.1| diguanylate cyclase with PAS/PAC sensor [Thioalkalivibrio sp.
           K90mix]
          Length = 575

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 154/368 (41%), Gaps = 3/368 (0%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVI 387
              +  +    ++ A  L  +  I L   +  RL  +           + V   +  T  
Sbjct: 180 MAQRHEQSQQWMLGATALAAVLIILLAAWVRYRLRRNHQALQDELRERMRVEARLRETQG 239

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
               A    +  +     R   A   +G   WDWDI   ++  +  +  + GL       
Sbjct: 240 GLEAAVARRTAALEETTARLEEAQRSAGAGFWDWDIRNGQLNWSAHVFELFGLDPRVDEA 299

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +++  +H +DR   R  ++  +       + + RV   D     + +      +  G
Sbjct: 300 GFESYIHAVHPDDRTRVRRTINQALASEAV-YRVDHRVVRPDGGVRHVRVEGEIARDDAG 358

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             L+ +G+  DIT +K S E +   A  D+LTG+ NR  F + L   L  +   +     
Sbjct: 359 RPLQVLGMVRDITLEKASEERLWHQAHHDSLTGLANRSLFQEHLRQALRRAQRHERG-LA 417

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++V D+D +K IND LG   GD VLV++  R+ E ++  D++AR+ G+ F I+L + ++ 
Sbjct: 418 LVVCDLDGFKPINDRLGHDAGDVVLVTVAGRLREGVRECDVVARMGGDEFVILLENMDDP 477

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
             +    + + +  A PI +    + V  S+G A +      +  ++  A+ AMY AK  
Sbjct: 478 DALLGVGLKLIERFAEPIEVNREAVQVGLSMGAALYPHDSADAEGLMLQADRAMYAAKEA 537

Query: 688 GGNHVESF 695
           GG  +  +
Sbjct: 538 GGGGIVLY 545


>gi|302134360|ref|ZP_07260350.1| GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 304

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 139/292 (47%), Gaps = 9/292 (3%)

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVY 724
              ++++ + A+ A+Y  K+        F  S           ++ L  A   +E ++++
Sbjct: 2   ADNATQLFEFADYALYQGKNHNPGTTCLFSASHREQLHTDGVTEQALRRANLETEFHVMF 61

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PII     E V  EAL +W+ P+ G +S + F+ IAE + MI  +   +L    +  +S
Sbjct: 62  QPIIESCTCETVAFEALARWNSPELGAVSPAHFIPIAERIGMINKLTAPLLTHALQMALS 121

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
           W       PI +  N+++ D    E    +  +I  + +  SR+ L  +E+ VM +  + 
Sbjct: 122 WPA-----PIRLSFNLSAHDCATWESVSTIVEIIENSGFDASRLDLEITETAVMQDIAQV 176

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSI 902
           +  + + R++G  ++LDDFGT  S LS L  +    +K + S +TG  +      I++S+
Sbjct: 177 QQAIAQFRQLGCGISLDDFGTGFSSLSQLHALALTKLKIDRSFVTGVHDNPASYKIVKSL 236

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           + ++ ++    + + +  + ++  LT +GC  +Q    + P+ F   L  L+
Sbjct: 237 VALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYFYSPPISFAETLAWLE 288


>gi|114776913|ref|ZP_01451956.1| two-component response regulator [Mariprofundus ferrooxydans PV-1]
 gi|114552999|gb|EAU55430.1| two-component response regulator [Mariprofundus ferrooxydans PV-1]
          Length = 479

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 139/350 (39%), Gaps = 7/350 (2%)

Query: 348 FIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
            +  + L+     RL    +        +  ++ +                 +       
Sbjct: 131 LLGCLLLFADAASRLAASEVVL---LEKLATMMTVAIENAIQQSEKRRVEADLEKSVATY 187

Query: 408 SLAVLGSGDIVWDWDIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
              V     I +   + R   +  +P +  ILG            W   IH  DR+   +
Sbjct: 188 RTLVEQIPAITYIATLDRSRILFVSPQVEDILGYRQDDFLANQEIWSQQIHPEDRERVLS 247

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            +   +  +      E+R+ A D  + W+      + + +   L   G+  DI+E+K   
Sbjct: 248 EVHQSLNAKI-PFHAEYRIYAKDGSYLWVKDAAATVRDHD-QDLYLQGVVYDISERKAYE 305

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E ++  A  D LTG+ NR  F DRL+  L  S      +  VM +D+D +K +ND LG  
Sbjct: 306 ERLMMMAHFDALTGLANRALFHDRLSQTLAYSKRHQK-QFAVMYLDLDGFKAVNDHLGHQ 364

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
            GD++LV    R+   ++  D +AR+ G+ F IIL   +    +   A  + ++I+ P  
Sbjct: 365 AGDNLLVQTAHRLRANVREVDTVARMGGDEFAIILDDVHTRDTVELVAWKLIEAISAPYE 424

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
            +     VT S+G A +     +   ++  A+ AMY AKH G N     +
Sbjct: 425 DVGAGHQVTMSMGIAIYPEDSTSCDLLITAADNAMYRAKHGGRNCYCFHQ 474


>gi|331005816|ref|ZP_08329173.1| multisensor diguanylate cyclase/phosphodiesterase [gamma
           proteobacterium IMCC1989]
 gi|330420377|gb|EGG94686.1| multisensor diguanylate cyclase/phosphodiesterase [gamma
           proteobacterium IMCC1989]
          Length = 571

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 209/447 (46%), Gaps = 8/447 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+KK  + +   A  D+LTG+PNR  FLDRL  +++LS    + + T+M ID++K+K+IN
Sbjct: 127 ERKKIEQHLDHLAHYDHLTGLPNRVLFLDRLAQMVNLSQRSKH-QFTLMYIDLNKFKEIN 185

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G   GD +L   + R+   ++  D +AR+ G+ F +IL +  ++ +I   A  +  S
Sbjct: 186 DNYGHHTGDQLLAEFSARLKAAVRRSDTVARIGGDEFTVILNNVGSTPEIIFLAQKIIDS 245

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           +  P  + + E+ V  SIG A +  +  T   + +NA+ AMY AK  G +    F     
Sbjct: 246 VQQPFFIGDNELEVGCSIGIAVFPDAGNTVELLQRNADSAMYQAKKTGISSYRFFLNQKK 305

Query: 701 RSDRVMIKE--DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
            +  +      +L   +++ ++ L Y P I L  + +VG+     W H   G  S   F 
Sbjct: 306 ENTFIENVSCDELREQIQDKKITLCYTPRIDLQSQRVVGVSISPVWKHKVLGKQSYQSFA 365

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I E    IK +  +M+E    ++ +     +   I+   +I    L        ++ ++
Sbjct: 366 SIIENTESIKYLTEWMIEASVEELGALYRTHSFSLIY---DIRRPQLQSLRFGAYVKNIM 422

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
            K     S ++ +F       +    +  +  +  +G +++L +FG     L+ +     
Sbjct: 423 DKNSVPMSSVEFTFLRKHGCNSGIYLKECIENIIDMGATISLQNFGENVFGLANMHDYDV 482

Query: 879 DTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             + F+ S +  +   EK I +L +++ +A  +E  +I  D+    D++ L  +GCD+ Q
Sbjct: 483 SLLHFSPSFINSALKNEKDILLLETLVLLAHKLERKVIINDVKTHSDLQALHSVGCDFAQ 542

Query: 937 DSHVASPLGFNSILKLLKERFPLVKNT 963
              V   L    +  LLK+  P + +T
Sbjct: 543 GGTVGEELTIKQLAILLKKHTPPIFST 569


>gi|206575849|ref|YP_002237248.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
 gi|206564907|gb|ACI06683.1| diguanylate cyclase/cyclic diguanylate phosphodiesterase
           [Klebsiella pneumoniae 342]
          Length = 723

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 157/430 (36%), Gaps = 26/430 (6%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       A +D LTG+PN ++ +  L           +    +  + ID    ++   
Sbjct: 315 RNKRRWRSQAEEDPLTGLPNLRALVSHLQ---------SSPLQAICSLRIDNLDFLSRHY 365

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +G D    + R +  LL   D + ++ G+   ++L         A     +      
Sbjct: 366 GLMMGVDCKRQIIRALQPLLGATDKVFQVPGSELILVLDG---PDPAARLNHMVAILNHK 422

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
             +   + + +     ++       T  +ML         A           E   V   
Sbjct: 423 KFSWHNQPLDLEFGAAWSRDDGQGETLHQMLGQLSWLSEQAGSERRVLALDEEQELVVDQ 482

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +++V +   +   ++   L L   PI     E   G   ++       G I   +F+ +
Sbjct: 483 TTEQVRLLMRVKQVLKERALVLYAQPIQNAEGE---GYHEILTRMRCGDGVIMPDQFIPL 539

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  + +  ++ +LE +   +         P     +N+    L+  +    + AL  +
Sbjct: 540 IVQFNLSQRFDMLVLETLFSSLHQ------HPGQRFSVNLLPSTLMQKDSAAQIIALFQR 593

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  I +  +E     N + S+  L  LR  G ++ +DDFGT  +    L ++  D 
Sbjct: 594 YRISPDLITIEVTEEQAFSNADTSQQNLDALRAFGCAIAIDDFGTGYANYERLKHLQADI 653

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           +++SI+ MA+  + +++A+ +  E     L  +G +Y+Q  
Sbjct: 654 IKIDGCFVRDILTDPLDAIMVKSIVEMARAKQMSVVAEYVESESQKARLLELGVNYLQGY 713

Query: 939 HVASPLGFNS 948
            V  P     
Sbjct: 714 LVGKPQPLGE 723


>gi|123444243|ref|YP_001008211.1| hypothetical protein YE4071 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122091204|emb|CAL14087.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 509

 Score =  267 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 118/254 (46%), Gaps = 6/254 (2%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++  + D+  A+E  +  L   P   + +  I+G EAL++W       +  SEF+
Sbjct: 251 HKTQKQLAQENDILQAIERRDFVLFLQPQWDMEERRIIGAEALLRWRQADGSYLLPSEFV 310

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE   +  +  ++LE   R +  W+ Q     + + +NI+   +  + +   ++ +I
Sbjct: 311 PDAEESGAMMPLGSWVLEEACRILADWKAQG--MNLSLAVNISGLQIQCDSIITHLKTVI 368

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGY 875
            +    PS++ L  +E+  + N + + +LL  L+ +G+S+ LDDFGT  S L Y   L  
Sbjct: 369 GRYNIDPSQLVLEITETAQIQNLDAAYVLLRELQGLGLSIALDDFGTGYSSLQYLNHLKS 428

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +P + +K + S +    E   A+ R I  ++  ++  ++A+ +  E   + L + G    
Sbjct: 429 LPVNIIKLDKSFVKHLPEDD-AMARIISTISDVLKLRVMAEGVETEEQRQWLLKHGIRCG 487

Query: 936 QDSHVASPLGFNSI 949
           Q    + PL     
Sbjct: 488 QGFLFSEPLSREEF 501


>gi|32815768|gb|AAP88285.1| conserved hypothetical protein [Delftia acidovorans]
          Length = 311

 Score =  267 bits (684), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 105/228 (46%), Gaps = 5/228 (2%)

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
             +  L Y PI+ L  ++IVG EAL++W HP+ G +   +F+ + E   ++  I  ++L 
Sbjct: 2   RGQFELHYQPIVDLRSDQIVGAEALLRWRHPQLGLLPPGQFLPVVESSGLMPEIGAWVLG 61

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
              R +  WR         + +N+++  +   +    ++ +++        +++  +ESV
Sbjct: 62  TACRQMREWR-MLAWQRFRLAVNVSASQVG-PDFDGWVKGVLADAELPAEYLEIELTESV 119

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEK 894
             GNP      L  LR+IG+    DDFGT  S L +L   P   +K + S + G     +
Sbjct: 120 AFGNPAIF-PALEALRQIGVRFAADDFGTGYSCLQHLKCCPITKLKIDQSFVAGLADDHR 178

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              I+ ++I +A  +   ++A+ +     +  L +  CD  Q    A 
Sbjct: 179 DRTIVHTVIQLAHGLGMDVVAEGVETPTSLALLRQAECDTGQGFLFAK 226


>gi|329850148|ref|ZP_08264994.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842059|gb|EGF91629.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  267 bits (684), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 13/253 (5%)

Query: 707  IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
            +  +L  A+      + Y PI        V  EALI+W+ P    +    F+ +AE   +
Sbjct: 886  MLRELRDAIAAEAFEMKYQPIFDRNGVAPVSAEALIRWNRPDGTPVGPDVFIPLAEREGL 945

Query: 767  IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
            I AI +    ++ R+  +W        + + +N++  +L        ++AL+ KT Y   
Sbjct: 946  ICAIGVIARSKVLREAANW-------SVPVAVNVSGIELEQPGFVADLKALLEKTGYDAG 998

Query: 827  RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            R+ L  +E+  MG+P+R  L+   L  +GI L+LDDFG   S L+ L   PFD +K +  
Sbjct: 999  RLVLEVTETAFMGDPKRINLIFEDLHALGIKLSLDDFGVGYSSLTALHRFPFDKIKIDKE 1058

Query: 887  LMTGSTEKRI------AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
             +      +       AI++++  + +     ++A+ I  +     L   G   +Q    
Sbjct: 1059 FVHALDSDQRAALEALAIIQAVAGIGRAFGMQVVAEGIETQSQHTALKAAGVHAMQGWLF 1118

Query: 941  ASPLGFNSILKLL 953
              P+    +  LL
Sbjct: 1119 GKPMSTADLTALL 1131


>gi|323497553|ref|ZP_08102570.1| hypothetical protein VISI1226_22040 [Vibrio sinaloensis DSM 21326]
 gi|323317302|gb|EGA70296.1| hypothetical protein VISI1226_22040 [Vibrio sinaloensis DSM 21326]
          Length = 825

 Score =  267 bits (684), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/562 (16%), Positives = 216/562 (38%), Gaps = 38/562 (6%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY-IHINDRDN 463
           E            V   D  +  + +        G ++  +     + L    H +D   
Sbjct: 130 EFFQQLFENPHHGVLLLDATKSILASNTYFLNHTGYSARQLLNKPIHELDSDKHSDD--- 186

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F   +   V  + G       +   D +     + ++ +  S G +  Y+    D+++  
Sbjct: 187 FHHGIWQDVESK-GYWSGVVLITQQDGKTIPQDLTLQKV--SFGGVCYYLCYYLDLSKNL 243

Query: 524 KSLEGIL----CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
             +  +            LT +P    F   +     ++  +D +   V  +   K+ ++
Sbjct: 244 YRVADVELGGVEL-----LTQLPTEAQFTQLVAKRW-MNDQEDTISMVVAFV--PKFNQV 295

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS--ENNSLKIADFAIAM 637
           +D        ++  SL+  +        ++  +  N F   L     ++  ++      +
Sbjct: 296 DDF-------EIKSSLSEHLARNRVAQ-LVGYIGNNHFVACLECAKTDSPNQVRVIHQTI 347

Query: 638 RKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHV 692
           RK  ++      + I    +   +G +           ++ +A  A+   +A  RG    
Sbjct: 348 RKFFSLLNQSAGKVIHKAILRGKVGVSVLGHDTYNPKLLVSHAVQALLEQNANSRGQITF 407

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
               +      R  ++E     + +  + + Y PI+ +   ++V  EAL ++  P    +
Sbjct: 408 YHGAIHKEVLRRKELEEWATKLIRSQSVEVYYQPIVDVKTWDVVKFEALSRFKGPNGKIL 467

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELC 811
           ++ E + IAE+L ++  ++  + ++   ++   + +     + + IN +    L  +E+ 
Sbjct: 468 NTQEMVTIAEDLDLVSDLDWCVGKKALEELADIQARFGQ-SLGVTINRSLNTKLDVDEVL 526

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           +  ++LI +   +P  + +  +ES    +  R   L+  +R+ G+S+ +DDFGT  S  S
Sbjct: 527 QSAESLIYQYAKTPDLVTIELTESAYFDSESRQSALIRNIRRKGVSIAIDDFGTGYSSFS 586

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
           YL    FD +K +   +        +  I++ I  +A  +   ++A+ +    +++ L  
Sbjct: 587 YLSDSNFDLLKIDREFVVDIKVGSHKYFIVKMITELAHTLSVKVVAEGVETRHELEVLCG 646

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
           +G D+IQ    + PL  + + K
Sbjct: 647 LGVDFIQGYFFSKPLPLDELEK 668


>gi|224372778|ref|YP_002607150.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589662|gb|ACM93398.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 657

 Score =  267 bits (684), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/534 (17%), Positives = 196/534 (36%), Gaps = 53/534 (9%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           +D  +       +   I       + G   + + Y     +D      +S +  +     
Sbjct: 161 FDTNKKFTYVNNEFCKIFSYPKEEIIGKEIHHMIYNAEKMQDEIEKFWESIINEKN-LFS 219

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTG 540
              + +  + +  ++   I P+ + NG+I+  I I  DI+E  K  +             
Sbjct: 220 EIIKCKDKNGKIIYIKALISPILDENGNIIELISICYDISEMMKPKK------------- 266

Query: 541 IPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
                   D L              P V +I+I+ ++   +  G  + + +       + 
Sbjct: 267 -----LLYDYLENA---------KEPFVALIEIENFQSFRNFFGEKIAETIEHKFEDYLK 312

Query: 601 ELLKFP-DILARLSGNRFGIILISENN----SLKIADFAIAMRKSIAMPINLLEREITVT 655
           +LL    D +  L    + I+    NN       I +     RK     +++ E    +T
Sbjct: 313 DLLPDGIDKIFDLDEGEYAIVTDLANNSKSYEEYINELKQIQRKINYSQLDIGEFLYDIT 372

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF----RVSSFRSDRVMIKEDL 711
             +  +          E  +N  + M   K+   + + +     +      + + I   L
Sbjct: 373 VIMCVSK-------GKEAFENTRIGMNKIKNNKDSFLIADGLLAKEKKIAQENLQILHIL 425

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++N  +   Y PII    + IV  E L++ ++     I  S+F+ +A++      I 
Sbjct: 426 KEAIDNKNIICFYQPIIENSTKRIVKYETLVRIEY-DNKIIPPSKFIDVAKQGIYYSKIT 484

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             +L      +  ++         I INI+  D+    + E +  ++SK       +   
Sbjct: 485 EIVLSEAFDIVKKFK------DYDISINISEIDIEKEIVRELIYEMLSKNKEFAKYVTFE 538

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E   +   +     + +++ +G+++ +DDFG+  S    L     D +K +G+L+   
Sbjct: 539 LLEDADVEKYDVLEEFITKIKDLGVTIAIDDFGSGYSNFIRLINYKPDFLKLDGTLIKDI 598

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            + +   ++++SI+  AK  E   IA+ +  E   K +  +G DY Q  +   P
Sbjct: 599 HKDKFSYSVVKSIVEFAKANEIKTIAEFVENEEIFKTVKELGVDYSQGYYFGKP 652


>gi|322613758|gb|EFY10697.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619499|gb|EFY16375.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625004|gb|EFY21833.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629553|gb|EFY26329.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634017|gb|EFY30754.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635545|gb|EFY32256.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639907|gb|EFY36583.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644401|gb|EFY40942.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649145|gb|EFY45585.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655235|gb|EFY51544.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658282|gb|EFY54548.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664282|gb|EFY60479.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669450|gb|EFY65599.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673177|gb|EFY69283.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676568|gb|EFY72636.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683319|gb|EFY79333.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685795|gb|EFY81788.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192528|gb|EFZ77757.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199573|gb|EFZ84664.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204651|gb|EFZ89649.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208099|gb|EFZ93044.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210177|gb|EFZ95078.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217044|gb|EGA01766.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220617|gb|EGA05066.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225463|gb|EGA09694.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229267|gb|EGA13391.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235418|gb|EGA19502.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237396|gb|EGA21459.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245151|gb|EGA29152.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248854|gb|EGA32780.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253141|gb|EGA36973.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258697|gb|EGA42358.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260602|gb|EGA44212.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266378|gb|EGA49866.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269791|gb|EGA53241.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 737

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 172/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSSRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R +   R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMADSREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+ +    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLKQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E     +  +G D
Sbjct: 661 VNADILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|163815278|ref|ZP_02206655.1| hypothetical protein COPEUT_01438 [Coprococcus eutactus ATCC 27759]
 gi|158449473|gb|EDP26468.1| hypothetical protein COPEUT_01438 [Coprococcus eutactus ATCC 27759]
          Length = 642

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 165/421 (39%), Gaps = 11/421 (2%)

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+ N   +++ +  +L     D+ L   +++I +   K +  ++G+     +L  ++ +
Sbjct: 225 TGLNNITRYMEDVDNVL-----DNGLNIGIIMISLVNDKALRGMIGVVEYHKLLRCVSDK 279

Query: 599 IGEL--LKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +  +   K  +      GN     ++    + +   FA  +   +          I + A
Sbjct: 280 LVAMGQSKRYNTEWYYLGNGMFRCIMDYKVADQAERFAANINSELKKGYTYNGMLINLLA 339

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
           +I              +++               +               +   +  A  
Sbjct: 340 NICITRCPEDIDNVDAVMRFGTELSDWEYTGQIMYARDIYKKENYDLIKNLDVIIDSAFV 399

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +    + Y PI  L  +     EAL++    K+G +    F+  AE+  MI  I  F+LE
Sbjct: 400 DGRFEVYYQPIYSLSAKRYNSAEALLRLYDEKYGYVRPDIFIPAAEKSGMIHKIGKFVLE 459

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            + + I+S + +      +I +N++    + +EL + ++ ++++   S  ++ L  +E+ 
Sbjct: 460 EVCKFIVSDKFKELGLD-YIEVNLSVIQCMSSELADDVREIMNRYNVSSEQLNLEITETA 518

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI 896
                      +  L   GI+ +LDDFGT  S +  +  +PF  VK + +      E   
Sbjct: 519 AAYAQTTMMNNIEELNDDGIAFSLDDFGTGYSNMKRIASMPFAIVKLDKTFT-EMNENDK 577

Query: 897 AI--LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
            +  +++ I M +++   I+ + +      KE   +G DYIQ  + + PL     +  +K
Sbjct: 578 MLKVVKNTISMVRDMNLRILVEGVETLESFKEFKALGVDYIQGYYFSKPLPMEKFVSEVK 637

Query: 955 E 955
            
Sbjct: 638 R 638


>gi|332715465|ref|YP_004442931.1| EAL domain-containing protein [Agrobacterium sp. H13-3]
 gi|325062150|gb|ADY65840.1| EAL domain-containing protein [Agrobacterium sp. H13-3]
          Length = 441

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 119/248 (47%), Gaps = 3/248 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+ N +  L Y   +R  D  ++G EAL++W+HPK G I  ++F+ +A++   +  
Sbjct: 192 ELRSALSNGQFELFYQAQVR-ADGTLLGAEALLRWNHPKRGYIPPADFIALAQQTGFMPT 250

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I  +++    + +  W++      + + INI +   +D      +    S     P  +K
Sbjct: 251 IGAWVIAEACKTLARWQEDPATQNLTLSINITADHFVDAGFSGQLLDAASSQGIKPQLLK 310

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ESV + + E +   +  L + G +++LDDFGT  S LSYL  +P   +K + S +T
Sbjct: 311 LELTESVFLFDIEAAIAKMKLLDRSGFTISLDDFGTGYSSLSYLRQLPLKQIKIDRSFVT 370

Query: 890 GSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G TE      I R+I+ M  ++   ++A+ +  E +++ +   GC   Q    A P    
Sbjct: 371 GVTESGRMATITRNIVQMGHDLSLEVLAEGVETEAELRMMLSYGCRLFQGYLFARPTSLV 430

Query: 948 SILKLLKE 955
              +    
Sbjct: 431 EFEQYAAR 438


>gi|254517776|ref|ZP_05129832.1| signaling protein ykoW [Clostridium sp. 7_2_43FAA]
 gi|226911525|gb|EEH96726.1| signaling protein ykoW [Clostridium sp. 7_2_43FAA]
          Length = 286

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 119/261 (45%), Gaps = 4/261 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           +            +  L  A+ N+E  +   P   L  E IVG E L++ +      I++
Sbjct: 23  YIYRDIFKKYYKREIYLHSALRNNEFDIYIQPKYSLKSESIVGAECLVRVNSKNKRVINT 82

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL-LDNELCEG 813
             F+ I E+   I  ++L++LE   + I  W D      + I +N++   L  D+     
Sbjct: 83  ERFVYILEKDKSIIELDLYILEEACKIINRWSDNKFKL-VPISVNVSRVTLIEDDTFITK 141

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  +I+        +++  +E V++ +  +   ++  ++ +GI ++LDDFG+  S L+ L
Sbjct: 142 LNDIINNYNIDTRFLEIEVTERVMLKDTNKIISVIKEIKDLGIKVSLDDFGSGYSSLTIL 201

Query: 874 GYIPFDTVKFNGSLM--TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +P DT+K +   +     +EK   ++ SII MA  +   ++A+ +      + L  +G
Sbjct: 202 KNLPIDTIKLDKLFLDKKDISEKGKIVIESIINMANRLGLEVVAEGVEYFEQAQVLKNLG 261

Query: 932 CDYIQDSHVASPLGFNSILKL 952
           C+ +Q      P+  +   KL
Sbjct: 262 CEIVQGYLYGRPINISDFEKL 282


>gi|116051853|ref|YP_789304.1| hypothetical protein PA14_14530 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587074|gb|ABJ13089.1| putative membrane protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 523

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 3/252 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 263 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++  D+         P   I  NI++    +  L +  + L++        +
Sbjct: 323 PMTRALMRQVGEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFI 441

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 442 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 501

Query: 947 NSILKLLKERFP 958
            S+L  L    P
Sbjct: 502 ESLLSSLAGGRP 513


>gi|238913642|ref|ZP_04657479.1| hypothetical protein SentesTe_21268 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 669

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 178/447 (39%), Gaps = 24/447 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+         A+ D +  +PN ++    L               T+
Sbjct: 240 IVNYMAVLA--TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTI 288

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    G+ +       L+  I  +L   + + ++SG+   + L +E +  
Sbjct: 289 CFLHVPGLELLGKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQ 348

Query: 629 KIADFAIAMRKSIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHA 684
           +I      +++            +   V  S        S +     E+  +++L++   
Sbjct: 349 RIEALDKHIKQF---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTN 405

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++ 
Sbjct: 406 APEDLQRRGAMHLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRL 463

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I+   F+ +A E  +  AI+L+++E   R + + R+          IN++   
Sbjct: 464 KDDNGDVINPDNFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTS 521

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        ++ L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFG
Sbjct: 522 VCRARFPAEVKQLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFG 581

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+     ++A+ +  E 
Sbjct: 582 TGYASYARLKNVDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEE 641

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
               +  +G DY+Q   +  P   + I
Sbjct: 642 IRSVVLSLGIDYLQGYLIGEPQLLSEI 668


>gi|293402384|ref|ZP_06646521.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304231|gb|EFE45483.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 436

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 156/412 (37%), Gaps = 6/412 (1%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
            + L  I +     D      + ++I +++ IN   G A GD VL S+ + +   LK   
Sbjct: 16  NEWLEHIYETIIQKDEKEYAFVEMNIKQFRYINIEYGCAFGDHVLASMQQLLETQLKGRG 75

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +AR   + F   +   + +  +  F + +  ++     +      +  S G        
Sbjct: 76  YVARRYADTFDFFVEHNHETHVLDSFLMDIIDAVFEN-GIEGLHKNLYTSFGIYLLHEEC 134

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV---MIKEDLCLAVENSELYLVY 724
              +++   A +A     H                + +    +   L  A   ++  +  
Sbjct: 135 PPFAKLQTLAGIARKQLHHDRRTFSYELAQQDVVQEYLKTYRLSTKLTQARFLNQFQIYI 194

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P + L   +I G E L++W       +  +EFM    +   +  I+L   +++   +  
Sbjct: 195 QPKVELQTHKICGGELLMRWILEDGTMVPLNEFMSTFTKNGDLYMIDLQHFDKMCAFLQQ 254

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            R + +   + I  N+ +  + D +  +       +       I+  F+E +     ++ 
Sbjct: 255 -RIKKHKAVVPISFNVTNLTVFDGDFLQDYLGTFRQYSLPKDLIEFEFTEDIHFEKKDQV 313

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSII 903
           + ++   R  G + TLDDFG   S    L     D +K +     G  +E+R  ++ +II
Sbjct: 314 QDIIDIFRSEGFTCTLDDFGNGFSSFDLLMNAAIDIIKLDRLFFQGMLSEQRKRVIHNII 373

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +AK     ++A+ +  +   + +   GCDYIQ  +   P+      KLL  
Sbjct: 374 DIAKIKGIKVLAEGVETKEYARFVEAEGCDYIQGFYYYRPMPLGEFEKLLDS 425


>gi|224369957|ref|YP_002604121.1| Faa [Desulfobacterium autotrophicum HRM2]
 gi|223692674|gb|ACN15957.1| Faa [Desulfobacterium autotrophicum HRM2]
          Length = 810

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 173/538 (32%), Gaps = 24/538 (4%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F+   + +L         + I I+      DLT    ++ +  +   +            
Sbjct: 13  FIAGTMLMLCTGIVCSGSQVIQITPQTDRKDLTPFLSVFRDDSQTLDIADIVTPRDNVLF 72

Query: 75  IEV---SASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVT 131
             V   S+        W  F   N S   +   +  P+  +    FF          +  
Sbjct: 73  KPVNGQSSFGYSTANFWFKFTANNPSTKTISWFLEYPYAVVDHFEFFHSGPEG-FTSTKG 131

Query: 132 PSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPN--LPQIYLWEPNFYKDTVNSFT 189
                   R  +  + V  +T+ PGA  TF   I +    +  +  W  + ++       
Sbjct: 132 GDLHPFSLRPVDYRTMVVPVTLPPGA-HTFYFRIHSGGAIVSAVTAWGKSAFEHHRTLDL 190

Query: 190 LYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSG 248
               I  G+     I+  + ++  R S  +        +  +  +  G   +      + 
Sbjct: 191 ALNWIYCGIMLATIIYCLLIFVSLRQSAFLFLAFFVSAITFFTLVHTGLAFQYLWPESTK 250

Query: 249 ELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTA 308
              +    S  A  S  ++F   +LH  +       I  + IA   +L  +SF+ P    
Sbjct: 251 WANLCHPLSGFAAISGAVLFTRSFLHTKKHLPLFDTILKTFIAGSVVLIFISFFVPYPFM 310

Query: 309 SIARITLASIVLYYTYF-IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDII 367
           + A + +A ++     F  I    K   RA   + AW    +    + +     + N++ 
Sbjct: 311 TRALMVMACLMGLAMTFSGIMLVFKQIRRAGFYLLAWSPFIVTIALMVIKSFGLIRNNLF 370

Query: 368 QPALV-GGLVLIVILIGFTVI----QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWD 422
             ++V     L+ IL+ F +I      +L    F + I +  +   +      D++W  D
Sbjct: 371 TDSMVPISSALVAILLSFALIDNVKIMILEREKFLKDIDNSEKMYRMLAENVKDVIWRLD 430

Query: 423 IVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG-------Y 474
           +     +  TP +  ++G       G I  +   +  N   N    +   +         
Sbjct: 431 LKTMKLIYITPSVEEMMGYTPKEAEGFI--FKEMLPRNAGKNAWKAIQEGMQKSASCTGE 488

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            R     E        Q  W       + +  G+ +  IGI  DITE+KK+       
Sbjct: 489 TRHAFTIELECYNKARQIFWTETTTTFVQDKQGNPIEMIGITRDITERKKAEAENRAL 546


>gi|294340522|emb|CAZ88906.1| Conserved hypothetical protein; putative PAS/PAC and GGDEF domains
           [Thiomonas sp. 3As]
          Length = 476

 Score =  267 bits (683), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 2/311 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            +V +++       +   +  ER   A+  + D +WDW ++ D V  +P +  +LG    
Sbjct: 150 LSVARNISKRLSLDEASSTRDERLRFALEQAMDGLWDWSLLTDAVYFSPQLKRMLGYGPH 209

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-M 502
            M   +  W   +H +DRD   +++D  +  R  R + E+R+R  +    W+  R +   
Sbjct: 210 EMTPHVETWKHNVHPDDRDQVMSLIDQHLRGRLMRFEAEYRLRNRNGHDIWVHDRGQVCE 269

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            ++ G   R +G+  +IT++K     +   A  D+LT IPNR+S +  L   + LS    
Sbjct: 270 RDAQGRPTRMVGMVQNITDRKLLELRLEKMASIDDLTQIPNRRSGMAALDQQIALSERSG 329

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
               +V V+DID +K +ND  G AVGD+VL  +   + + L+  D++ R  G  F ++L 
Sbjct: 330 G-PLSVGVLDIDTFKSVNDRFGHAVGDEVLYRVAVLLRQTLRPSDLVYRSGGEEFVLVLP 388

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
           +       A  A       A           VT SIG A++   +    ++L  A+LA+Y
Sbjct: 389 AAGRETADAIAADIHAAFEAKDWEGDLGVPDVTVSIGLATYPQDQPQLHKLLDQADLALY 448

Query: 683 HAKHRGGNHVE 693
            AK  G N   
Sbjct: 449 RAKEIGRNRTC 459


>gi|332998134|gb|EGK17738.1| EAL domain protein [Shigella flexneri VA-6]
          Length = 405

 Score =  267 bits (683), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 142 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 201

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 202 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 259

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 260 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 318

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 319 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 378

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 379 FFAKAMPPQVFMQWMEQ 395


>gi|330977937|gb|EGH77840.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 597

 Score =  267 bits (683), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 117/582 (20%), Positives = 239/582 (41%), Gaps = 24/582 (4%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKG 333
           +        G    +  A + I   +     + +  + +   A  +    + + +  M  
Sbjct: 25  NLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFISMLA 84

Query: 334 YERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVG--GLVLIVILIGFTVIQHVL 391
           ++  + +     +  I  + + +     +    I    +    +  +V+ IG +V+ ++ 
Sbjct: 85  FQAPLKIAYDLSITLISLLIVLITALVAMRALTIPELTLKRCLISAVVMGIGISVMHYLG 144

Query: 392 ATGYFSQGIFSDGER-QSL-AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +   S        R  +L  ++     +    + R     +     +   A   + G  
Sbjct: 145 MSAMRSTATQYYEPRMFALSILVAVLSSIALLTLSRHLRQYSGMFHQMFRYAVSLLLG-- 202

Query: 450 RNWLPYIHINDRDNFRTILDS--FVGYRRGRLQYEFRVRAADNQFHWMIIRIRP------ 501
              L  +H+      R ++     +         +  +  A      +   I        
Sbjct: 203 -AGLLTMHLMGMKALRLVIPEGVALHGPTTENSQQLGLTIAAIALLIIAGSISAAMADKK 261

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           +     D+ R   + + + + + SL+ +   A  D LT + NR+ F       L     +
Sbjct: 262 LQGKEHDLQRVNVLLSQLDQARVSLQQV---AHYDPLTNLINRRGFNQIFAEKLQEHTFN 318

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             +   VM +DID +K+IND LG   GD++L  +  RI    +  D++AR  G+ F  IL
Sbjct: 319 KGM-LAVMFLDIDHFKRINDSLGHDAGDELLKVIAERIRSATRAQDVVARFGGDEF-CIL 376

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
           +S  +  +    A  +   +   I L  R + +T SIG A +     T  E+LK+A+LA+
Sbjct: 377 LSIPDYEEARHLAHRVMHKMKETIALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLAL 436

Query: 682 YHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGL 738
           Y +K +G N V  F     +  S  + ++E+L  A+     L + Y PI+ +    +  L
Sbjct: 437 YQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGKGLQVYYQPIVDMRTGHVAKL 496

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+HP  G +  + F+ IAE   +I  ++ ++L R   D+ +   +     + I +
Sbjct: 497 EALVRWNHPHHGLLVPARFISIAETNGLIAELDNWVLRRACHDLRTLGQEGLEQ-LIISV 555

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGN 840
           N ++  L  NEL E ++  ++    +P +++L  +E+ +MGN
Sbjct: 556 NCSALTLGRNELVEEVERALADADAAPGQLELEVTENALMGN 597


>gi|168238188|ref|ZP_02663246.1| mase1 domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736785|ref|YP_002115570.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194712287|gb|ACF91508.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288880|gb|EDY28253.1| mase1 domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 737

 Score =  267 bits (683), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+ +    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLKQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E     +  +G D
Sbjct: 661 VNADILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|89902242|ref|YP_524713.1| PAS/PAC sensor-containing diguanylate cyclase [Rhodoferax
           ferrireducens T118]
 gi|89346979|gb|ABD71182.1| diguanylate cyclase with PAS/PAC sensor [Rhodoferax ferrireducens
           T118]
          Length = 571

 Score =  267 bits (683), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 152/341 (44%), Gaps = 9/341 (2%)

Query: 359 TKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAV---LGSG 415
                +D     LV    L+  +    + +         + +    + Q LA      + 
Sbjct: 230 LGVTGSDGKLLGLVTFAELLASIEHDYIRELRETLKKRERSLVISKQHQRLAAKVFESTF 289

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFVGY 474
           + +   +      +  P    I G  +  + G     L    H   ++ F   +   +  
Sbjct: 290 EGIMITNAESVIESVNPAFTQITGFMAHEVIGKTPAILSSGKH---QEIFYRKMREDIAA 346

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
             G  Q E   R    + +   + I  +SN +G++  Y+G+ +DIT +K + E +L  A 
Sbjct: 347 -TGHWQGEIWNRRRTGETYPEWLTINAVSNDDGEVTHYVGVFSDITTRKAAEEQVLFLAH 405

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTG+PNR  F DRL   +  +  D   +  VM +D+D +K+ ND LG  +GD +L  
Sbjct: 406 HDGLTGLPNRALFADRLHQAIVHAHRD-RAKVAVMFLDLDNFKQTNDTLGHHIGDQLLQM 464

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           + +R+   ++  D +ARL G+ F ++L S  N+  IA  +  +  +++ P+ L   EI V
Sbjct: 465 VAQRLTNCMREGDTVARLGGDEFTVVLESITNTGDIAYLSQKIIDTVSHPLLLDGHEIAV 524

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           T SIG + +      S +++K A+ AMY AK  G N+   F
Sbjct: 525 TCSIGVSVYPDDSEESDDLIKYADTAMYRAKEGGRNNFRFF 565


>gi|288549912|ref|ZP_05968601.2| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317164|gb|EFC56102.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 729

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/433 (18%), Positives = 158/433 (36%), Gaps = 23/433 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              +G    A  D LTG+PN ++  D L          D+    V  + +D  + ++   
Sbjct: 315 WMKQGWQERALTDPLTGLPNIRALEDYLQ---------DHPDAKVCCLRMDNLEFLSRHY 365

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM--RKSI 641
           GI +      S+T  +   L+  + L +L G+   ++L+    S ++      +  RK I
Sbjct: 366 GILMRVHCKRSVTATLQPYLQQEEKLFQLPGSELVVVLLGPEPSERLQYMVDHLNSRKII 425

Query: 642 AMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
                L    I   A+ G             ++   AE +    +  G  +         
Sbjct: 426 WNKTALD---IEFGAAWGEVEGGEHLHPMLGQLSWLAEQSCATHRVLGLTNSLETVSGQT 482

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
               +M+   +  A+E   L L   PI     +   G   ++     +   I+   F+ +
Sbjct: 483 TDRVLML-GRIKRALEEGGLRLYAQPIQNAQGK---GYYEILTRIESEGEIITPDRFIPL 538

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    ++ ++E +   + +  +          +N+    L+  E    +  L  +
Sbjct: 539 VAQFNLSHRFDMSVVESLLEWLKNHPE--PHAETRFSVNLMPLTLMQKEAASEIIQLFER 596

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP+ + +  +E     N   S   +  LR+ G  + +DDFGT  +    L  +  D 
Sbjct: 597 YFVSPNAVVIEITEEQAFSNSGASIKNIQTLREYGFRIAIDDFGTGYANYERLKRLQADI 656

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I++SI  +AK     ++A+ +      + L R G DY+Q  
Sbjct: 657 IKIDGCFVKDICSDSMDAMIVQSICNLAKTKSLCVVAEYVETPEQREMLLRFGVDYLQGY 716

Query: 939 HVASPLGFNSILK 951
            +  P   + +  
Sbjct: 717 LIGKPAPLSELQA 729


>gi|296387659|ref|ZP_06877134.1| hypothetical protein PaerPAb_05872 [Pseudomonas aeruginosa PAb1]
          Length = 491

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 3/244 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I 
Sbjct: 247 SELRRALEANEFIPYYQPLSPGQGGRWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIV 306

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++A D+         P   I  NI++    +  L +  + L++        +
Sbjct: 307 PMTRTLMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITL 365

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ + E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 366 VLELTERELIESSEVTDRLFDELHALGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFV 425

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+  
Sbjct: 426 ARIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPL 485

Query: 947 NSIL 950
            S+L
Sbjct: 486 ESLL 489


>gi|332084285|gb|EGI89488.1| EAL domain protein [Shigella dysenteriae 155-74]
          Length = 446

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 183 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 242

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     K
Sbjct: 243 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEK 300

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 301 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 359

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 360 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 419

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 420 FFAKAMPPQVFMQWMEQ 436


>gi|168817743|ref|ZP_02829743.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205344687|gb|EDZ31451.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320086997|emb|CBY96767.1| Inner membrane protein yfgF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 737

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 178/447 (39%), Gaps = 24/447 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
           I+ Y+ +    T Q+         A+ D +  +PN ++    L               T+
Sbjct: 308 IVNYMAVLA--TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTI 356

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             + +   + +    G+ +       L+  I  +L   + + ++SG+   + L +E +  
Sbjct: 357 CFLHVPGLELLGKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQ 416

Query: 629 KIADFAIAMRKSIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHA 684
           +I      +++            +   V  S        S +     E+  +++L++   
Sbjct: 417 RIEALDKHIKQF---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTN 473

Query: 685 KHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                    +  +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++ 
Sbjct: 474 APEDLQRRGAMHLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGIRGD--VYHEILLRL 531

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD 804
                  I+   F+ +A E  +  AI+L+++E   R + + R+          IN++   
Sbjct: 532 RDDNGDVINPDNFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTS 589

Query: 805 LLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           +        ++ L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFG
Sbjct: 590 VCRARFPAEVKQLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFG 649

Query: 865 TKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEI 922
           T  +  + L  +  D +K +GS +           I+ SI  +A+     ++A+ +  E 
Sbjct: 650 TGYASYARLKNVDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEE 709

Query: 923 DIKELTRMGCDYIQDSHVASPLGFNSI 949
               +  +G DY+Q   +  P   + I
Sbjct: 710 IRSVVLSLGIDYLQGYLIGEPQLLSEI 736


>gi|168243278|ref|ZP_02668210.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261458|ref|ZP_02683431.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466750|ref|ZP_02700604.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194449584|ref|YP_002046567.1| hypothetical protein SeHA_C2763 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194407888|gb|ACF68107.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195630747|gb|EDX49339.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205337604|gb|EDZ24368.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205349640|gb|EDZ36271.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 737

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 174/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E++  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTESHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|205353608|ref|YP_002227409.1| hypothetical protein SG2535 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273389|emb|CAR38361.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628706|gb|EGE35049.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 737

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|167549478|ref|ZP_02343237.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325318|gb|EDZ13157.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 737

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMTQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|238787719|ref|ZP_04631516.1| hypothetical protein yfred0001_25050 [Yersinia frederiksenii ATCC
           33641]
 gi|238724062|gb|EEQ15705.1| hypothetical protein yfred0001_25050 [Yersinia frederiksenii ATCC
           33641]
          Length = 498

 Score =  267 bits (682), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 139/338 (41%), Gaps = 16/338 (4%)

Query: 633 FAIAMRKSIAMPINLLEREIT-------VTASIGFASWTSSKIT---SSEMLKNAELAMY 682
            A  + + I  P+  + +E+        +   +   ++              +N +L   
Sbjct: 164 IAWCINRLIIHPLRTMAKELEKIGNQGVLHHQLTLPAYHQDDELGVLVHNYNRNQQLLAE 223

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
                   +            ++M + D+  A+E+ +  L   P   + +  ++G EAL+
Sbjct: 224 AYTDMSRINGTKSSTWHKAPKQLMREHDILQAIEHRDFVLFLQPQWDMQEPRVIGAEALL 283

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIAS 802
           +W       +  SEF+  AEE   +  +  ++LE   R +  W+ Q     + + +NI+ 
Sbjct: 284 RWRQADGSYLLPSEFVPDAEENGAMIPLGSWVLEEACRILADWKTQGIT--LSLAVNISG 341

Query: 803 KDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDD 862
             +  + +   + A++S+    P ++ L  +E+  + N + +R LL  LR +G+S+ LDD
Sbjct: 342 LQVQCDHILTHLTAIMSRYSIDPRQLVLEITETARIHNLDEARRLLCELRGLGLSIALDD 401

Query: 863 FGTKCSLLSYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIY 919
           FGT  S L YL +   +P D +K +   +    E   A+ R I  ++  ++  ++A+ + 
Sbjct: 402 FGTGYSSLQYLNHLKGLPIDMIKLDKIFVKHLPEDD-AMARIIGTISDILKLRVMAEGVE 460

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
            +   + L   G    Q    + PL           R 
Sbjct: 461 TDEQRQWLLEHGIHCGQGFLFSEPLPREEFETRYTPRQ 498


>gi|77459730|ref|YP_349237.1| diguanylate cyclase [Pseudomonas fluorescens Pf0-1]
 gi|77383733|gb|ABA75246.1| putative transmembrane sensory box GGDEF/EAL domain protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 358

 Score =  267 bits (682), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 139/323 (43%), Gaps = 8/323 (2%)

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSD--GERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +  +       + +L      Q I  D   +R   +   +    WDW++  DR+  +  I
Sbjct: 25  VRALRQQLAEYRELLTRAAEGQNIRQDGDADRFKRSQYFARIGTWDWEVDTDRLYWSDAI 84

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
             + G   G +      +   +H +DR   R      +         E+RV   D    W
Sbjct: 85  FGMFGFKIGEVTPSYALFCSCVHPDDRARVRAGELRCLET-GENHDEEYRVVWPDGTIRW 143

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
           +      + N +  +++ +G+  DITE+K S   +   A  D LTG+PNR    +RL+  
Sbjct: 144 LRETGNVVRNDHDAVIKMMGVVRDITEEKASASYLQHLAHFDPLTGLPNRLVLEERLSEA 203

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
           L+ +   +  R  ++ ID++ +K IND  G A GD VL++   R+  +L+  D +AR+ G
Sbjct: 204 LEHARMTE-TRVALVFIDLNGFKAINDRYGHAAGDRVLITTATRLKRILRVSDTVARIGG 262

Query: 615 NRFGIIL----ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           + F +IL       N   +       +   ++ PI +   +  +  S+G A +     T 
Sbjct: 263 DEFVVILQGLAPGLNLQDEARSICQKIFIELSPPIPIGNEQRHIGTSLGVAVFPDHAPTM 322

Query: 671 SEMLKNAELAMYHAKHRGGNHVE 693
             +L  A+LAMY AK  G N   
Sbjct: 323 DRLLHIADLAMYEAKRSGNNQYR 345


>gi|331678385|ref|ZP_08379060.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli H591]
 gi|331074845|gb|EGI46165.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli H591]
          Length = 768

 Score =  267 bits (682), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 356 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 406

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 407 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 463

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 464 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 523

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 524 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 580

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 581 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 638

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 639 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 698

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 699 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 758

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 759 LIGRPQPLAD 768


>gi|56412614|ref|YP_149689.1| hypothetical protein SPA0364 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197361549|ref|YP_002141185.1| hypothetical protein SSPA0340 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56126871|gb|AAV76377.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093025|emb|CAR58462.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 737

 Score =  267 bits (682), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALKNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQIEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|288934184|ref|YP_003438243.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
 gi|288888913|gb|ADC57231.1| diguanylate cyclase/phosphodiesterase [Klebsiella variicola At-22]
          Length = 723

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 157/430 (36%), Gaps = 26/430 (6%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       A +D LTG+PN ++ +  L           +    +  + ID    ++   
Sbjct: 315 RNKRRWRSQAEEDPLTGLPNLRALVSHLQ---------SSPLQAICSLRIDNLDFLSRHY 365

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +G D    + R +  LL   D + ++ G+   ++L         A     +      
Sbjct: 366 GLMMGVDCKRQIIRALQPLLGATDKVFQVPGSELILVLDG---PDPAARLNHMVAILNHK 422

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
             +   + + +     ++       T  +ML         A           E   V   
Sbjct: 423 KFSWHNQPLDLEFGAAWSRDDGQGETLHQMLGQLSWLSEQAGSERRVLALDEEQELVVDQ 482

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +++V +   +   ++   L L   PI     E   G   ++       G I   +F+ +
Sbjct: 483 TTEQVRLLMRVKQVLKERALVLYAQPIQNAEGE---GYHEILTRMRCGDGVIMPDQFIPL 539

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  + +  ++ +LE +   +         P     +N+    L+  +    + AL  +
Sbjct: 540 IVQFNLSQRFDMLVLETLFSSLHQ------HPGQRFSVNLLPSTLMQKDSAAQIIALFQR 593

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  I +  +E     N + S+  L  LR  G ++ +DDFGT  +    L ++  D 
Sbjct: 594 YRISPDLITIEVTEEQAFSNADTSQQNLDALRAFGCAIAIDDFGTGYANYERLKHLQADI 653

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           +++SI+ MA+  + +++A+ +  E     L  +G +Y+Q  
Sbjct: 654 IKIDGCFVRDILTDPLDAIMVKSIVEMARAKQMSVVAEYVESEPQKARLLELGVNYLQGY 713

Query: 939 HVASPLGFNS 948
            V  P     
Sbjct: 714 LVGKPQPLGE 723


>gi|290508387|ref|ZP_06547758.1| yfeA [Klebsiella sp. 1_1_55]
 gi|289777781|gb|EFD85778.1| yfeA [Klebsiella sp. 1_1_55]
          Length = 723

 Score =  266 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 157/430 (36%), Gaps = 26/430 (6%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++       A +D LTG+PN ++ +  L           +    +  + ID    ++   
Sbjct: 315 RNKRRWRSQAEEDPLTGLPNLRALVSHLQ---------SSPLQAICSLRIDNLDFLSRHY 365

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +G D    + R +  LL   D + ++ G+   ++L         A     +      
Sbjct: 366 GLMMGVDCKRQIIRALQPLLGATDKVFQVPGSELILVLDG---PDPAARLNHMVAILNHK 422

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
             +   + + +     ++       T  +ML         A           E   V   
Sbjct: 423 KFSWHNQPLDLEFGAAWSRDDGQGETLHQMLGQLSWLSEQAGSERRILALDEEQELVVDQ 482

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            +++V +   +   ++   L L   PI     E   G   ++       G I   +F+ +
Sbjct: 483 TTEQVRLLMRVKQVLKERALVLYAQPIQNAEGE---GYHEILTRMRCGDGVIMPDQFIPL 539

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  + +  ++ +LE +   +         P     +N+    L+  +    + AL  +
Sbjct: 540 IVQFNLSQRFDMLVLETLFSSLHQ------HPGQRFSVNLLPSTLMQKDSAAQIIALFQR 593

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  I +  +E     N + S+  L  LR  G ++ +DDFGT  +    L ++  D 
Sbjct: 594 YRISPDLITIEVTEEQAFSNADTSQQNLDALRAFGCAIAIDDFGTGYANYERLKHLQADI 653

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           +++SI+ MA+  + +++A+ +  E     L  +G +Y+Q  
Sbjct: 654 IKIDGCFVRDILTDPLDAIMVKSIVEMARAKQMSVVAEYVESEPQKARLLELGVNYLQGY 713

Query: 939 HVASPLGFNS 948
            V  P     
Sbjct: 714 LVGKPQPLGE 723


>gi|295688600|ref|YP_003592293.1| diguanylate phosphodiesterase [Caulobacter segnis ATCC 21756]
 gi|295430503|gb|ADG09675.1| diguanylate phosphodiesterase [Caulobacter segnis ATCC 21756]
          Length = 535

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/549 (15%), Positives = 204/549 (37%), Gaps = 48/549 (8%)

Query: 406 RQSLAVL-GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF 464
           R+ L +   S D++ +                I+G +  ++ G    W    H +DR   
Sbjct: 6   RRLLGLAFASADLLVEL-RDGQVRLVLGAAQRIMGRSEAALTG--ATWSSLFHPDDRPLM 62

Query: 465 RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
             +L S    +R   +    VR AD++  ++ + +R +  + G I   + +A       K
Sbjct: 63  DAVLASAEDGQR---RGPIVVRLADDETRYVGVILRALPENEGRISCAVTVAQASAPALK 119

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
             E             +  R+SF D +   L  +A    +   + +++      + D L 
Sbjct: 120 PGE-------------LQPRESFDD-IAKGLFEAARATGMELELAMVEFAGLGAMRDGLS 165

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
            +   ++ V +   +           +LS +RF ++   ++ S  +      +  + A  
Sbjct: 166 PSEAAELDVRVAGAVRAESHGGSAATQLSQDRFALVRSRDDQSDNMLKRLSRIVSAEA-- 223

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNA-ELAMYHAKHRGGNHVESFRVSSFRSD 703
                     TA +     ++    +   L+ A +  +      G     +  ++     
Sbjct: 224 ----------TAHVVPLENSAPPSRALRALRYALDDFLRAGLKDGPPANLTDAMNRSVKR 273

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
            +     L   +      L + P++ L   +    EAL++++       S    + +AEE
Sbjct: 274 TLAQAGALSAVITQRRFNLAFQPVVALATGQAHHHEALVRFEDGA----SPFAMIRMAEE 329

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
             +I+ ++  ++E++ + + +         + + +NI+ + ++     + +  L+++   
Sbjct: 330 FDLIEELDKVVVEQVIKRLAN----DYEGKLKLAVNISGRTIVSETFVDHIDRLLARFDA 385

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
              R+    +E+  + +   +   +  LR +G  + LDDFG   +  +YL  +  D VK 
Sbjct: 386 VKGRLIFEITETSAIDDLPYANQNIQALRSMGSMVCLDDFGAGSASFAYLQQLNLDIVKI 445

Query: 884 NGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           +G  +    +     A++R ++ M ++++   +A+ +        +   G D+ Q     
Sbjct: 446 DGRYVRELADNSRDGAMVRHLVQMCRDLKIRTVAEMVETPEVEDIVRNAGVDFAQGWLYG 505

Query: 942 ----SPLGF 946
                P   
Sbjct: 506 KAAEKPAPA 514


>gi|307720987|ref|YP_003892127.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979080|gb|ADN09115.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas autotrophica DSM
           16294]
          Length = 564

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 190/445 (42%), Gaps = 38/445 (8%)

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP-TVMVIDI 573
           +  D+T +  ++E    + + D+LTG+ N  SF++ +      +     +    ++ +DI
Sbjct: 140 MYKDLTAE--NIEETKGDVYIDSLTGLNNLSSFMNNI-----TAHDSSKVEFNILIFLDI 192

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGII-----LISENNS 627
           D  + IND+ G   G+ ++V     +          +  ++G++F ++     + +E   
Sbjct: 193 DNLQGINDLYGTDAGNKIIVDFANFLKSFANEFSYKIYHVTGDQFILLDQAAYIDTEKYE 252

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +  +    +R   ++ +   +++I + A+IG +             ++A++A+  AK  
Sbjct: 253 EEFKNLQEQIR-LFSVYLAEADKKIDINATIGMSLGQDYS------FEHADMALKSAKEN 305

Query: 688 GGNHVESF---RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
             ++               ++  +  +  A+EN+ +  V+ PI+ + + +IV  EAL++ 
Sbjct: 306 HQSYAVYNTLLDTKEKMKQKIEWQYKIIKALENNRIVPVFQPIVDI-NGDIVKYEALMRL 364

Query: 745 ---DHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
              ++ +    S   FM IA +     AI+  M+  +        D        I IN++
Sbjct: 365 AELENGEEKLYSPDHFMEIAHQSKYYSAISCMMIYTVL-------DSFKTHEHTISINLS 417

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D+ +      +   I +     +RI +   ES  + + +  +  + + RK+G+ + +D
Sbjct: 418 YTDIQNKTFMNSIYNRIKEEKI-GNRIIVEILESENIQDYQILKDSILKFRKLGVKIAID 476

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAIL--RSIIPMAKNIETTIIAKDIY 919
           DFG+  S    +  I  + +K + SL+        A +  +SI      ++ TIIA+ ++
Sbjct: 477 DFGSGYSNYKQILEINPEYIKIDESLVKNIDVDSHAFILTKSIASFFHELDATIIAEHVH 536

Query: 920 GEIDIKELTRMGCDYIQDSHVASPL 944
            +     L +   D  Q  +   P+
Sbjct: 537 NKEIYDILKKFEVDQFQGYYFYEPM 561


>gi|194443866|ref|YP_002041765.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194402529|gb|ACF62751.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 737

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 174/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E++  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTESHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPISGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|332344224|gb|AEE57558.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 729

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFVSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|326797160|ref|YP_004314980.1| diguanylate phosphodiesterase [Marinomonas mediterranea MMB-1]
 gi|326547924|gb|ADZ93144.1| diguanylate phosphodiesterase [Marinomonas mediterranea MMB-1]
          Length = 689

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 180/432 (41%), Gaps = 15/432 (3%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           + L  +  +A  D  TG+ N   F       +     +D     + ++ I  ++ +    
Sbjct: 255 RLLRSVRKDASFDVHTGLLNAVGF----EHAVRSPEFNDGH---LYLVKITNWQNVVKHF 307

Query: 584 GIAVGDDVLVSLTRRIGELLKFPD-ILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
           G+     ++      + E L+    I+A L  +   + L +     +             
Sbjct: 308 GVDTAHYLVTKSAEHLQEALQGLAPIIATLENDEIAVYLPNGRLDFEQESAMFDSLTQGD 367

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               L    I +   IG        +    ++  A   +        +            
Sbjct: 368 TLQKLG--HIRLEVKIGIIRDAMQDVLLDGVIDKARQVVQSILGTHEDIRMFTDEIHEAI 425

Query: 703 DRVM-IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                I++++  ++   + YL+Y P+      +IVG EAL++        +S   ++ +A
Sbjct: 426 RYSAYIEQEVRKSLAEDKFYLLYLPVYDAQVNQIVGAEALLRSSLDSLSGLSPQVYVTVA 485

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E+  +I+ I+  ++ +  + +      +      I INI+S++LLD    E  +  ++ +
Sbjct: 486 EKTGLIREIDRMVIGKSLKAL---ESVSLPDDFTISINISSQELLDTTFIERFEEAVNAS 542

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SPS+++L  +E+  +   + +  +L RLR  G  ++LDDFGT  +  ++L  IP D +
Sbjct: 543 SISPSQLRLEITETSFVDLNQANTCMLERLRSFGCRISLDDFGTGYTSFNHLKNIPVDEI 602

Query: 882 KFNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K +   +    E +   I++S+I +A+  +  ++A+ I  ++ +K L  MGC Y Q  ++
Sbjct: 603 KIDRGFVNEMDEYETGVIIQSMITIARAFKYDLVAEGIETQLQLKRLREMGCVYFQGYYI 662

Query: 941 ASPLGFNSILKL 952
           + P   + ++ L
Sbjct: 663 SMPTQLSDVIDL 674


>gi|82544863|ref|YP_408810.1| hypothetical protein SBO_2421 [Shigella boydii Sb227]
 gi|331643019|ref|ZP_08344154.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli H736]
 gi|81246274|gb|ABB66982.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|331039817|gb|EGI12037.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli H736]
          Length = 768

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 356 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 406

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 407 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 463

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 464 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 523

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 524 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 580

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 581 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 638

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 639 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 698

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 699 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 758

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 759 LIGRPQPLAD 768


>gi|170740044|ref|YP_001768699.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
 gi|168194318|gb|ACA16265.1| diguanylate cyclase with PAS/PAC sensor [Methylobacterium sp. 4-46]
          Length = 468

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 11/376 (2%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQ 388
            G              +++        +A+       +          L  I+     ++
Sbjct: 99  AGRARGTSLRFFAGVPLILAPGLRLGVLAVLGPTPRRVSPEERARLADLAAIVGAHLRLR 158

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP 448
           H  A       + +      L    + D++   D    R   +P    +LG A   + G 
Sbjct: 159 HTEAV------LRTSEAHFRLLAESASDMIVLADADTTRRYVSPASLPLLGYAPEELVGT 212

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS-NSNG 507
               +  +H +D   +R +LD        R+    R R  D +F W+      M     G
Sbjct: 213 RP--IDGVHPDDAAGYRALLDRVSRGEADRVVGRQRYRRKDGRFVWVEATFSVMREGGTG 270

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
               Y+    DI+E+K++   I   A  D LTG+PNR    DRL   L L          
Sbjct: 271 LPTGYVAAVRDISERKEAESRIAHLALHDALTGLPNRLLLRDRLQQELALVQRYGGA-FA 329

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++ +D+D +K++ND  G A GD +L +   RI  +++  D  AR+ G+ F I+    N  
Sbjct: 330 LLCLDLDHFKEVNDRFGHAAGDALLCAAAERIRRIIRTEDTAARIGGDEFVILQTRTNQP 389

Query: 628 LKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +     A  + +++  P  L     +TV  SIG A      +    + + A+ A+Y AK 
Sbjct: 390 VNAEAMARRLIEALHAPFALAGFPPLTVGVSIGVAFAPRDSLDGEGLYRLADQALYAAKA 449

Query: 687 RGGNHVESFRVSSFRS 702
            G   V     S+   
Sbjct: 450 AGRGVVRLAPHSARAC 465


>gi|16765823|ref|NP_461438.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161612742|ref|YP_001586707.1| hypothetical protein SPAB_00441 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167991809|ref|ZP_02572908.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168232052|ref|ZP_02657110.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469995|ref|ZP_03075979.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251481|ref|YP_002147457.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263962|ref|ZP_03164036.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|200388492|ref|ZP_03215104.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|207857916|ref|YP_002244567.1| hypothetical protein SEN2484 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|16421045|gb|AAL21397.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161362106|gb|ABX65874.1| hypothetical protein SPAB_00441 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456359|gb|EDX45198.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197215184|gb|ACH52581.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242217|gb|EDY24837.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|199605590|gb|EDZ04135.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205329854|gb|EDZ16618.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205333678|gb|EDZ20442.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|206709719|emb|CAR34069.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247701|emb|CBG25528.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994615|gb|ACY89500.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159055|emb|CBW18568.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913491|dbj|BAJ37465.1| inner membrane protein YfgF [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222794|gb|EFX47865.1| Putative cytochrome C-type biogenesis protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323130833|gb|ADX18263.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326624328|gb|EGE30673.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 737

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|213425345|ref|ZP_03358095.1| hypothetical protein SentesTyphi_06503 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 613

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 193 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALKNA---------PWSTICFLHVPGLELL 243

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 244 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 303

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 304 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 360

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 361 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 418

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 419 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 476

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 477 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 536

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ I  E     +  +G D
Sbjct: 537 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYIESEEIRSVVLSLGID 596

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 597 YLQGYLIGEPQLLSEI 612


>gi|332163409|ref|YP_004299986.1| hypothetical protein YE105_C3789 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667639|gb|ADZ44283.1| hypothetical protein YE105_C3789 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 509

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 117/254 (46%), Gaps = 6/254 (2%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++  + D+  A+E  +  L   P   + +  I+G EAL++W       +  SEF+
Sbjct: 251 HKTQKQLAQENDILQAIERRDFVLFLQPQWDMEERRIIGAEALLRWRQADGSYLLPSEFV 310

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE   +  +  ++LE   R +  W+ Q     + + +NI+   +  + +   ++ +I
Sbjct: 311 PDAEESGAMMPLGSWVLEEACRILADWKAQG--MNLSLAVNISGLQIQCDSIITHLKTVI 368

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGY 875
                 PS++ L  +E+  + N + +  LL  L+ +G+S+ LDDFGT  S L Y   L  
Sbjct: 369 GCYNIDPSQLVLEITETAKIQNLDAAYALLRELQGLGLSIALDDFGTGYSSLQYLNHLKS 428

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +P + +K + S +    E   A+ R I  ++  ++  ++A+ +  E   + L + G    
Sbjct: 429 LPVNIIKLDKSFVKHLPEDD-AMARIISTISDVLKLRVMAEGVETEEQRQWLLKHGIRCG 487

Query: 936 QDSHVASPLGFNSI 949
           Q    + PL  N  
Sbjct: 488 QGFLFSEPLSRNEF 501


>gi|323492497|ref|ZP_08097645.1| hypothetical protein VIBR0546_15711 [Vibrio brasiliensis LMG 20546]
 gi|323313284|gb|EGA66400.1| hypothetical protein VIBR0546_15711 [Vibrio brasiliensis LMG 20546]
          Length = 823

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/554 (16%), Positives = 207/554 (37%), Gaps = 46/554 (8%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR--DNFRTILDSFVGY 474
            V   D  R+ V            ++  + G   + L      D+    F   +      
Sbjct: 141 GVILADEQRNIVVCNDYFLEHSKYSNQQLVGRSMDILNS----DKHSPGFYQKIWQ-QTN 195

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL---- 530
           + G       +++   + +   + ++ ++   G  + YIG+  D++     +  +     
Sbjct: 196 KVGSWSGVVLIQSCHGKTYPQDLTLQKITLVEG--VFYIGVYLDLSNNLYRIADVELGGV 253

Query: 531 CNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDD 590
                  LT +P  + F+  +T     S    N+   V           +   G  V D 
Sbjct: 254 EL-----LTQLPTEKQFIRSVTQHWMESVE-PNISMVVAF---------HPSFG-QVDDF 297

Query: 591 VLVSLTRRIGELLKFPD---ILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAMPI 645
            L S+   + E +        +  L  N F   L  +      +I      +R+  A   
Sbjct: 298 ELKSM---LSEHMAKNKVAKYVGYLGSNHFVACLECDKVAGPSQIRMIHQTIRRFFASLN 354

Query: 646 NLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
               R I    +   +G +           ++ +A  AM          +  +  +  + 
Sbjct: 355 QSAGRTIHSAIINGCVGVSVLGHDTHNPKLLVSHAVQAMLEQASEQRGQITFYHGALHKE 414

Query: 703 DRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
                 ++E     + +  + + Y PI+ + + +IV  EAL ++       +++ E + I
Sbjct: 415 VLRRKEMEEWAEKLIRSQNIDVYYQPIVDVKNWDIVKFEALSRFKGHNGKILNTQEMVTI 474

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQALIS 819
           AE+L ++  ++  + ++   D+ + +++     + I IN +    L  +E+     +LI 
Sbjct: 475 AEDLDLVSDLDWCVGKKALHDLNTIQERFGKQ-LGITINRSLNTKLEVDEVLRSADSLIH 533

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P  + +  +ES    +  R   L+  +R+ G+S+ +DDFGT  S  +YL    FD
Sbjct: 534 QYATYPETVTIELTESAYFDSESRQSALIRNIRRRGVSVAIDDFGTGYSSFAYLSDCNFD 593

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +   +        +  I++ I  +A  ++  ++A+ +    ++K +  +G DYIQ 
Sbjct: 594 VLKIDREFVKDLKAGSHKFFIVKMITELAHTLDVRVVAEGVETLDELKVVCGLGVDYIQG 653

Query: 938 SHVASPLGFNSILK 951
              + PL    +  
Sbjct: 654 YFFSKPLPLEELEN 667


>gi|224582962|ref|YP_002636760.1| hypothetical protein SPC_1153 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467489|gb|ACN45319.1| hypothetical protein SPC_1153 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 737

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R I + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFIAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|146284114|ref|YP_001174267.1| hypothetical protein PST_3802 [Pseudomonas stutzeri A1501]
 gi|145572319|gb|ABP81425.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 653

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/574 (16%), Positives = 211/574 (36%), Gaps = 15/574 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
             +L+V       ++   A       +    +R  L +  S D +  +      +     
Sbjct: 78  EWLLLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVDAI-AYVHDGMHIYANRA 136

Query: 434 IATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
              + G      + G     +  I   D+  F+T L ++     G  +       AD   
Sbjct: 137 YLELFGYDDVEDLEGMP--MIDLIAGTDQSRFKTFLKNY-QTLEGAAELACGGVRADGDT 193

Query: 493 HWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
               +   P   +    I   I   ND  E +K  E     + QD +TG+ NR SFL+ +
Sbjct: 194 LKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLRE----ISSQDPVTGLLNRNSFLEVM 249

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              ++ +  +     ++  + +D++  +   +G+A  D++L  L   +         LAR
Sbjct: 250 DAAVERAV-NAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHFSGDSQLAR 308

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            + + F ++           +    + K     +++  R +  T SIG A        + 
Sbjct: 309 FADDVFTVLQPGLTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGLDEKTAKAQ 368

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRL 730
           + ++ A              + +       +     I   L  A+EN+   L++ PII L
Sbjct: 369 DAIERAHRCADDLSDGNALKIYNPADELAAAANRGDIIAMLKQALENNSFRLLFQPIISL 428

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             +     E L++   P+   +  SEF+ +A E  +   I+ +++    + +   R + +
Sbjct: 429 RGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLLAEHRAKGH 488

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              +F+   +++  + D  L   +  ++  +      +     E+  +   + ++ L   
Sbjct: 489 RTRLFLH--LSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPAKALAQG 546

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNI 909
           L  +G  + L  FG   +  + L ++  + +K +GS     T ++    L++++      
Sbjct: 547 LAGLGCRIALSQFGCVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALLAELHEQ 606

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +   I   +     +  L + G  YIQ  ++  P
Sbjct: 607 QKQSIVPFVESATVLATLWQAGVSYIQGHYLQGP 640


>gi|157738494|ref|YP_001491178.1| EAL domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700348|gb|ABV68508.1| EAL domain protein [Arcobacter butzleri RM4018]
          Length = 407

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 158/420 (37%), Gaps = 40/420 (9%)

Query: 542 PNRQSFL-DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIG 600
           PNR+ F+ D +    +           V + DI  +  IN   G   G+ +L  ++ R+ 
Sbjct: 14  PNRKDFIKDNIAKEFNK----------VAIFDISGFGNINHYYGYDFGEKILKMVSIRLE 63

Query: 601 ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREITVTASIG 659
                   +  L  + F        +  +      ++       PI L   ++ +    G
Sbjct: 64  NKFL-NGKIYYLGADIFAATSNETVSKDRFVQAVKSIIWYFGYSPIELNGYKVYIPLRAG 122

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLC----- 712
            A         +E+L  AE A+   +    N V          +   + I+++L      
Sbjct: 123 VAI------NYAELLFCAEYALKQTRVLKHNLVVYDNEEHHICNPSSLSIEQELYWEMQI 176

Query: 713 -LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A++  +  +    I    +++    E LI+    K   +S   F+  A+++ +   I 
Sbjct: 177 IQAIKKDKFEIFAQSINSQNEKK---YEILIRMKDSKDEIVSPYFFINRAKKINLYNEIT 233

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             ++++                +   IN +  D+L+ ++ + +   I +       + + 
Sbjct: 234 KKVIQKSFEF-------FEDKNVEFSINFSISDILEKDVVDFLIQKIYEFDI-GYFLTIE 285

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + N E     +  ++ +G+ + +DDFGT  S  SYL  +  D +K +GS++   
Sbjct: 286 ITESEGIDNIEEVVSFIKIVKNLGVKIAIDDFGTGYSNFSYLVKLQADFIKLDGSIIQEI 345

Query: 892 TEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            + +   A++ +I+  A+ I    +A+ +  +   +    +  DY Q      P     +
Sbjct: 346 NKTKTAKAVVEAIVFFAQKIGIKTVAEFVSSKEIFETCKELNIDYFQGYWFDEPKNVKEL 405


>gi|301025339|ref|ZP_07188900.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 196-1]
 gi|299880117|gb|EFI88328.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 196-1]
          Length = 764

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 352 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 402

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 403 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 459

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 460 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 519

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 520 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 576

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 577 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 634

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 635 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 694

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 695 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 754

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 755 LIGRPQPLAD 764


>gi|288958840|ref|YP_003449181.1| hypothetical protein AZL_019990 [Azospirillum sp. B510]
 gi|288911148|dbj|BAI72637.1| hypothetical protein AZL_019990 [Azospirillum sp. B510]
          Length = 315

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 116/251 (46%), Gaps = 3/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            E +  A++  EL LV+ P   ++   + G EAL +W       +    F+ +AE+   I
Sbjct: 40  AERVRDAIDRRELSLVFQPQADVVTNRLTGFEALSRWRLSDGTMLPPDVFVPMAEQGTAI 99

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  + L         W      P + + +N++++ L D EL   +  +++ T    + 
Sbjct: 100 HLLGDWTLRSACAAAAGWLRA-GYPDLPVSVNLSARQLDDPELVRSVLGILADTGLPAAN 158

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +KL  +E+ +      +R  L +LR  GI L LDDFGT  S L+ L  +P + +K +   
Sbjct: 159 LKLELTETCLFNQSADTRETLLQLRGAGIRLVLDDFGTGWSSLATLRRVPVEALKIDKQF 218

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    + R    I+++++ +A  +E  ++A+ +        L    CD +Q   ++ P+ 
Sbjct: 219 VQAMVDDRGAAIIVQAVVALAHALELGVVAEGVETAEQRLYLQAYRCDTLQGYWLSHPVS 278

Query: 946 FNSILKLLKER 956
            + + + L ER
Sbjct: 279 ADGVAEFLAER 289


>gi|156934970|ref|YP_001438886.1| hypothetical protein ESA_02820 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533224|gb|ABU78050.1| hypothetical protein ESA_02820 [Cronobacter sakazakii ATCC BAA-894]
          Length = 547

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 5/247 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L   + N+EL + Y PIIRL + +  G EALI+W  P    ++   F+ +AE+  +I  
Sbjct: 303 RLQDGIANNELVMHYQPIIRLSNGQPTGAEALIRWPQPDGSMLTPDIFIPLAEQTGLIGP 362

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++  +  D+  W          I INI++ DL D +  +     +++   +P ++ 
Sbjct: 363 LTRRIVHNVLDDLGDWLRTHPQQ--HISINISAFDLHDPQFVDMFSQALAQHGVAPHQLA 420

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E     +P  S  ++ RLR  G  + +DDFGT  S LSYL  +  D +K + S + 
Sbjct: 421 LEITERGF-ADPALSGPIIARLRAAGHKIYIDDFGTGYSSLSYLEDLDVDILKIDKSFVD 479

Query: 890 GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
               +   +   II MAK ++  ++A+ +  +     L   G  Y Q    +  L     
Sbjct: 480 AL--EYKTVTPHIIEMAKTLKLEMVAEGVENQSQALWLREHGVQYAQGWLYSKALPAGEF 537

Query: 950 LKLLKER 956
           +      
Sbjct: 538 IAWCGRH 544


>gi|332989431|gb|AEF08414.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 737

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRSLQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|254508140|ref|ZP_05120266.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548975|gb|EED25974.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 572

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 169/429 (39%), Gaps = 29/429 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI-DKY--KKINDVLGIAVGDDVL 592
           D LT +P    FL +LT     +  D+    T++V+ I  ++  K  N+           
Sbjct: 10  DILTQLPTSDHFLAQLTKRCKATDRDN----TLLVLAIQPRFASKGTNEQ---------K 56

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
                 + E           SG     + +   +  +          +         ++I
Sbjct: 57  KRFAAYLKEKTSALFSGYMDSGRFLACLPVVVEHPEQRVRDIAKTLTTFFHCFKHATKDI 116

Query: 653 TV---TASIGFASWTSSKITSSEMLKNAELAMY--HAKHRGGNHVESFRVSSFRSDRVMI 707
                T  +G + +     T + ++ +A  A+   H+            +      +  +
Sbjct: 117 HEVLKTGLLGVSIYGVDAETPNRLVSHACQAILELHSGENRRIAFYDRSIHLQIERKKRL 176

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  +  ++ N  + + + PI+ +  + +   EAL ++   +    ++ +++ +AE++  I
Sbjct: 177 EAHVQKSMLNKNVEVYFQPIVSVKQQCVEKFEALCRFPPLESEPATTQDYIQVAEDMGKI 236

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA---LISKTLYS 824
             ++  +         + + +     + + +N +     D  + + ++     +     S
Sbjct: 237 FELDNLVCGMAFEQFKALQKRFGDT-LQLSVNRSLNT--DVGIVDVLKHTALALDDAGLS 293

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
           P  + + F+ES  + N + S+ L+  LR  G+ + +DDFG+ C+   YL    FD +K +
Sbjct: 294 PDCLNIEFTESAFLDNSDNSQQLIQTLRDAGVKIAVDDFGSGCASFHYLTKSFFDVLKID 353

Query: 885 GSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              ++G  +      I+ +++ +A  +   ++A+ +  E ++  LT +G DYIQ    A 
Sbjct: 354 RQFISGLEKGTREYHIVHTLVHLAHQLNLDVVAEGVETESELALLTELGVDYIQGYLFAK 413

Query: 943 PLGFNSILK 951
           P     I+ 
Sbjct: 414 PESTEQIVA 422


>gi|220903473|ref|YP_002478785.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867772|gb|ACL48107.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 485

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 167/417 (40%), Gaps = 13/417 (3%)

Query: 547 FLDRLTTILDLSATD-DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           F   L   L +  +D    R  V+  D+  ++ +N + G   G+ +L +    +  L   
Sbjct: 60  FESFLQEALRVVRSDLTGRRFAVLHADMQGFQVLNRLYGEQAGNSMLRAFAAFLRHLDC- 118

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI----GFA 661
               +R+  ++F ++         +   A  +           +R +   + +    G  
Sbjct: 119 YVCASRIFADQFTMLFT-VPEGTSLEVAAGKIVAK-GELFLAKKRNLHPRSHLAFVGGVC 176

Query: 662 SWTSSKITSSEMLKNAELAMYHAKH--RGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
               +  +    +  A+ A    K   R    + +  +   R  R  + ED+  ++E   
Sbjct: 177 PVEGTPASLHPHVSRADQARRALKPTLRSRGGIFTDAMEVRRLQRQSLYEDVIKSLECGG 236

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           ++ +  P I +    +VG EAL +   P   +I  + F+ + EE   I +++  + E++ 
Sbjct: 237 VFFLLQPQIDIATGAVVGAEALARMRTPDGRDIMPASFVPLLEESGDIISLDFLVYEQVC 296

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           R +    D    P + + +NI+ ++  +    E   AL+      P  + L  +ESV + 
Sbjct: 297 RYLRQCLD-TGRPFVPVTVNISRENFKNPAFAEEFHALVCAHGLEPRHVGLEITESVFIK 355

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTEKRIA 897
           N    R  + + ++ G S+ LDDFG   S L+ L  +PFD +K + SL+          +
Sbjct: 356 NLTEIRDSVRQFKQYGYSIWLDDFGAGYSSLNVLKEVPFDVIKIDRSLLGSGEIASVNKS 415

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           I+ SII ++ ++   ++ + +        L   G    Q    A P+       L++
Sbjct: 416 IISSIISLSGDLHMEVLCEGVENATQRNFLLGFGGIQAQGFFYARPMSCQDFEALME 472


>gi|318607907|emb|CBY29405.1| sensory box/GGDEF family protein [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 511

 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 117/254 (46%), Gaps = 6/254 (2%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                ++  + D+  A+E  +  L   P   + +  I+G EAL++W       +  SEF+
Sbjct: 253 HKTQKQLAQENDILQAIERRDFVLFLQPQWDMEERRIIGAEALLRWRQADGSYLLPSEFV 312

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AEE   +  +  ++LE   R +  W+ Q     + + +NI+   +  + +   ++ +I
Sbjct: 313 PDAEESGAMMPLGSWVLEEACRILADWKAQG--MNLSLAVNISGLQIQCDSIITHLKTVI 370

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGY 875
                 PS++ L  +E+  + N + +  LL  L+ +G+S+ LDDFGT  S L Y   L  
Sbjct: 371 GCYNIDPSQLVLEITETAKIQNLDAAYALLRELQGLGLSIALDDFGTGYSSLQYLNHLKS 430

Query: 876 IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
           +P + +K + S +    E   A+ R I  ++  ++  ++A+ +  E   + L + G    
Sbjct: 431 LPVNIIKLDKSFVKHLPEDD-AMARIISTISDVLKLRVMAEGVETEEQRQWLLKHGIRCG 489

Query: 936 QDSHVASPLGFNSI 949
           Q    + PL  N  
Sbjct: 490 QGFLFSEPLSRNEF 503


>gi|327482431|gb|AEA85741.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 688

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 95/574 (16%), Positives = 211/574 (36%), Gaps = 15/574 (2%)

Query: 374 GLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPD 433
             +L+V       ++   A       +    +R  L +  S D +  +      +     
Sbjct: 113 EWLLLVANRELANLEERRARRSAEVALREAEKRCQLLLDSSVDAI-AYVHDGMHIYANRA 171

Query: 434 IATILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF 492
              + G      + G     +  I   D+  F+T L ++     G  +       AD   
Sbjct: 172 YLELFGYDDVEDLEGMP--MIDLIAGTDQSRFKTFLKNY-QTLEGAAELACGGVRADGDT 228

Query: 493 HWMIIRIRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
               +   P   +    I   I   ND  E +K  E     + QD +TG+ NR SFL+ +
Sbjct: 229 LKTRMIFSPAAYDGEPCIQVVIRAENDSAELQKLRE----ISSQDPVTGLLNRNSFLEVM 284

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              ++ +  +     ++  + +D++  +   +G+A  D++L  L   +         LAR
Sbjct: 285 DAAVERAV-NAGQSASLAYVRVDRFAALQADIGLADSDELLSQLATLLRGHFSGDSQLAR 343

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
            + + F ++           +    + K     +++  R +  T SIG A        + 
Sbjct: 344 FADDVFTVLQPGLTPQQAEPELRKLLSKVEGHLLDVGGRTVQTTLSIGVAGLDEKTAKAQ 403

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRL 730
           + ++ A              + +       +     I   L  A+EN+   L++ PII L
Sbjct: 404 DAIERAHRCADDLSDGNALKIYNPADELAAAANRGDIIAMLKQALENNSFRLLFQPIISL 463

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             +     E L++   P+   +  SEF+ +A E  +   I+ +++    + +   R + +
Sbjct: 464 RGDSFEHYEVLLRLLDPQGVEVPPSEFLSVASEAGLATKIDRWVILNSIKLLAEHRAKGH 523

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              +F+   +++  + D  L   +  ++  +      +     E+  +   + ++ L   
Sbjct: 524 RTRLFLH--LSAASIQDASLLAWLGVVLKASRLPGDSLAFELGEADAVAYLKPAKALAQG 581

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST-EKRIAILRSIIPMAKNI 909
           L  +G  + L  FG   +  + L ++  + +K +GS     T ++    L++++      
Sbjct: 582 LAGLGCRIALSQFGCVLNPFNTLKHLDAEFIKVDGSYTQDLTRQENQEALKALLAELHEQ 641

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +   I   +     +  L + G  YIQ  ++  P
Sbjct: 642 QKQSIVPFVESATVLATLWQAGVSYIQGHYLQGP 675


>gi|302671300|ref|YP_003831260.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395773|gb|ADL34678.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 828

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 123/245 (50%), Gaps = 1/245 (0%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+EN  + + Y P++R +  ++ G E+L +W  P+ G +S  +F+   EE   I  +
Sbjct: 22  IEKALENDWVKVYYQPVVRALTGQLCGAESLARWIDPEMGFLSPDKFIGALEESRQIHKL 81

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           + ++++++  DI   R    +  I + IN +  DL   ++ + ++  + +       I +
Sbjct: 82  DCWIVKKVCSDISE-RIHNGLDAIPVSINFSRLDLEATDMLKVLEDAVDEYDIPRDYIHV 140

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+++ + E    ++ R R  G  + +DDFG+  S L+ L    FDT+K + S +  
Sbjct: 141 EITESMIVSDAEMMSGMIERFRSTGYEVWMDDFGSGYSSLTVLKDYHFDTLKLDMSFLRS 200

Query: 891 STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
             +K  AI+ S + MAK I+   +A+ +  +  ++ L  +GC  +Q  +   P+  +   
Sbjct: 201 FDDKSKAIITSTVIMAKEIDVMTLAEGVETKEQVEFLKNIGCGRLQGYYYGKPMPIDDFF 260

Query: 951 KLLKE 955
             +K 
Sbjct: 261 DHIKN 265



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 9/264 (3%)

Query: 413 GSGDIVWDW-DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSF 471
            S  + + W D  R  +  +       G     + G     + + H + +      LD  
Sbjct: 563 ASSHLKFFWKDKNRRFLGASKAFLDFYGFTIDDILGKDDEDMGW-HTDGKTYRDDELDVL 621

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
                      + +       H +I    P+ + N  I   +G   D+ E+   +  +  
Sbjct: 622 SKGTVVSGVPGYCIVK--GVVHNIICFKTPIYDGN-KITGLMGYFFDVDEEMARINKLYN 678

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI-DIDKYKKINDVLGIAVGDD 590
               D +TG  N++ FLD L      +  +      ++++ D    + + D  G      
Sbjct: 679 VKRTDTVTGCMNKKGFLDALIDY-SQNYHNLGRDFALIILRDTKHARVVAD-YGEDFIKK 736

Query: 591 VLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER 650
           +L  + + I  + K    +AR+  + F ++L ++N S  + +  + ++++I     L   
Sbjct: 737 LLHRMGQEILNVTKDKCAVARMIQSEFALLLYTDNQSE-VDELCLQLKEAIESIRELDGN 795

Query: 651 EITVTASIGFASWTSSKITSSEML 674
           ++T+  S  +   +    T   M 
Sbjct: 796 KMTLKVSTSYMFRSDESATDENMY 819


>gi|297516966|ref|ZP_06935352.1| EAL domain protein [Escherichia coli OP50]
          Length = 379

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 116 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 175

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 176 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 233

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 234 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 292

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 293 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 352

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 353 FFAKAMPPQVFMQWMEQ 369


>gi|254457171|ref|ZP_05070599.1| response regulator [Campylobacterales bacterium GD 1]
 gi|207085963|gb|EDZ63247.1| response regulator [Campylobacterales bacterium GD 1]
          Length = 683

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/308 (24%), Positives = 146/308 (47%), Gaps = 2/308 (0%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
           I  +       + +    ER +LA+  S D +WDW I ++ +  +  + T+LG  +  + 
Sbjct: 371 IVDITEQREKEEELHDYIERFNLAIESSRDGLWDWSIKKNTMFCSTALLTMLGYENDDVE 430

Query: 447 GPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
                    +H +D  +    L   +       + E+RV     ++ W++ R + + +  
Sbjct: 431 CSFEFLKRLVHPDDVGDAEKKLHEHLNANTEYYETEYRVMTKSGEYKWILNRAKVLFDKE 490

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
               R IG   DI  +K+    +   +  D LTG+ NR   ++    I   SA   + + 
Sbjct: 491 WAPDRVIGFYTDIDSRKELELRLEHLSMTDKLTGLLNRNGLIENFE-IFQKSAQRFDRKM 549

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            +M ID+D +KK+ND LG A GD+VL+ ++ R+  + +  +I  R+ G+ F I +    +
Sbjct: 550 GLMFIDLDGFKKVNDTLGHAAGDEVLIIISDRLQSMSRSNEIAVRIGGDEFVIFIPEYED 609

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +++  +  +  S ++P+++ + E+++  SIG A+   ++ T  E+L  A+ AMY  K 
Sbjct: 610 IDELSSLSQRILDSFSIPLSIKDGEVSIGMSIGIATA-DNRETLDEILSRADEAMYKVKK 668

Query: 687 RGGNHVES 694
            G +    
Sbjct: 669 SGKDGYAF 676



 Score = 92.3 bits (228), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 18/151 (11%)

Query: 412 LGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
                IV+ W    D      +  +  ILG    +       +   IH +D +     + 
Sbjct: 264 NNGNIIVFKWKNTTDWPVEYVSESLENILGYKPEAFLNSHIKYSKIIHEDDLERVFIEVQ 323

Query: 470 SFVGYRRGRLQYE-FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
                R    Q+E +R++  D  + W+    + + +SN DI  YIG   DITEQ++  E 
Sbjct: 324 ENSQKRVASFQHEDYRIKRHDGSYAWIHDTTQIVYDSNKDISHYIGYIVDITEQREKEEE 383

Query: 529 ILCNAFQDNLTGIPNRQSFLDRLTTILDLSA 559
                  D          +++R    ++ S 
Sbjct: 384 -----LHD----------YIERFNLAIESSR 399


>gi|160941002|ref|ZP_02088341.1| hypothetical protein CLOBOL_05896 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436092|gb|EDP13859.1| hypothetical protein CLOBOL_05896 [Clostridium bolteae ATCC
           BAA-613]
          Length = 466

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/414 (20%), Positives = 176/414 (42%), Gaps = 12/414 (2%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R + ++RL ++L       + +  V+ + ++ +K +N   G    +++L  +   + E+ 
Sbjct: 41  RAACMNRLESVLGA----PSSKGVVLKLYLENFKSLNKTFGYDYCEELLSQIKSYLKEVA 96

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +    + R  G  F IIL    +  K  D A  + +       +   +   +A IG  S+
Sbjct: 97  EGN--IYRYIGVEFIIILEQL-SEGKACDLADEILERFGNVWKIRGVDCLCSAQIGLCSY 153

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELY 721
                ++ E+LK  +LA+  A   G N +  +  +              L  A+E +EL 
Sbjct: 154 PGHATSTDELLKRLDLAVSAASDCGPNQMAVYDSNMHTQFVRRQAVAMYLQTALEKNELE 213

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y P   L +      ++ ++      G + ++EFM IAE+   I+AI  + L+   R 
Sbjct: 214 VRYRPTYNLKEGRFTRADSYMRIFIQGIGLVGAAEFMPIAEDSGQIRAIGYYALDHAGRC 273

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           I    +        I I ++   L+  +  E +  ++        ++ L   +S +    
Sbjct: 274 ISELMNTGREFD-SICIPVSPVLLVQEDFLEQVTKVLETYQIPKGKLALEVDDSALSNVY 332

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
               + +  L  +G+ L L++FG+ C+ +S +  +P +TVK     +       K  +I 
Sbjct: 333 LNVNITMQELSDMGVELVLNNFGSGCAPVSSILDLPINTVKLERMFVWQLETNPKSASIA 392

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +I +A+ +   IIA+ +  E  +  L    C+Y Q  + A  +  + ++K++
Sbjct: 393 GGLIQIARELGIHIIAEGVETENQLNALNNYQCEYQQGFYYAPTMEQDVLIKVM 446


>gi|311108819|ref|YP_003981672.1| EAL domain-containing protein 6 [Achromobacter xylosoxidans A8]
 gi|310763508|gb|ADP18957.1| EAL domain protein 6 [Achromobacter xylosoxidans A8]
          Length = 527

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 120/280 (42%), Gaps = 5/280 (1%)

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +A Y           +      ++ R   KE L  A+  +E  + Y P+         G+
Sbjct: 245 MATYLPVALLLGLGLAVGTHRLQASRRSFKEQLRRAMRANEFQVHYQPVYSQATGRCEGV 304

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++W+ P  G +    F+  AE   MI  +   +L+ I RD+ SW      P   I +
Sbjct: 305 EALMRWERPGIGPVRPDVFIAEAEAGGMIIPLTQHLLKLIERDMGSWPT---PPDFHIGV 361

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           NIA++ L   EL   +QA + +       + L  +E  ++ +  ++R  +  LR  G+ +
Sbjct: 362 NIAAEHLSSAELLPDVQAFVDQVAARQPLVVLEITERSLIADNGQARRNIDALRAQGVRV 421

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAK 916
            +DDFGT    LSYL   P D +K +   +       +   +L +II +A  +  +++A+
Sbjct: 422 AIDDFGTGHCSLSYLQKFPVDYLKVDQGFVQAIGPAGEEAPVLDAIITLAHRLGLSVVAE 481

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +        L   G  +IQ    A P+    +++     
Sbjct: 482 GVETPYQFDYLKARGVAFIQGYLFARPMPSAELVRWYAGH 521


>gi|300928560|ref|ZP_07144084.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 187-1]
 gi|300463432|gb|EFK26925.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 187-1]
          Length = 749

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 157/431 (36%), Gaps = 24/431 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I+     + +     +  +  ++ T   +L      AE +  H      +  E      
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVCGQ 504

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + +   +  A++  +L L   PI     E   G + ++       G ++  +F+ 
Sbjct: 505 TTKQVL-LLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLP 560

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    +L +LE + + + +       P     +N+    LL   +   +  L  
Sbjct: 561 LIAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFK 618

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D
Sbjct: 619 RYHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQAD 678

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q 
Sbjct: 679 IIKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQG 738

Query: 938 SHVASPLGFNS 948
             +  P     
Sbjct: 739 YLIGRPQPLAD 749


>gi|261211829|ref|ZP_05926116.1| hypothetical protein VCJ_002092 [Vibrio sp. RC341]
 gi|260839179|gb|EEX65811.1| hypothetical protein VCJ_002092 [Vibrio sp. RC341]
          Length = 820

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 199/568 (35%), Gaps = 50/568 (8%)

Query: 417 IVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYR 475
            V   D     +          G     + G     +    H      +  +        
Sbjct: 138 GVVITDEQTRILACNRYFEEQTGYQQSDLLGLKTSVFNSGKHSQ--HFYLDMWHQLREQ- 194

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ------KKSLEGI 529
            G        + A  +  W    +    +   D   YIG   D+ +       K++ +  
Sbjct: 195 -GWWNGTILSQRASGE-VWPQDLLVKRLSPQKDQTFYIGFTTDLAQHLDRVIDKQAGDIE 252

Query: 530 LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGD 589
           L       LT +P    F++ L      +         V+ I   ++            D
Sbjct: 253 L-------LTQLPTLTKFVELLKQ---RALPSATATTFVLAIQ-PQFSS----------D 291

Query: 590 DVLVSLTRRIGELLKFPDIL---ARLSGNRFGIILISENN--SLKIADFAIAMRKSIAMP 644
                + RR+   L   + +          F  +L S+N      +      +R+  A  
Sbjct: 292 RYYAEI-RRLAGSLAKNEQVQLCGYHGEGIFLCLLESQNEGGHPALNGLHRTLRQFFAEL 350

Query: 645 INLLEREITVTAS---IGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSS 699
                + +    +   +G +           ++ +A  AM  +HA      +     +  
Sbjct: 351 YQRGGQVVHQAMTKGRLGVSVLGMDTDKVERLISHAVQAMLEHHAGESRHINFYDRAIHQ 410

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
               R  +++ +   +EN ++ + Y PII      IV  EAL ++  P+  + S+ E + 
Sbjct: 411 QIERRKSLEKWVQKWIENEDVDVFYQPIIDSQTWSIVKFEALCRFQAPEILHASTQELIS 470

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALI 818
           IAE+L +I  ++  +  +   D+   +       + I +N +    L   ++      LI
Sbjct: 471 IAEDLNLIDQLDCLVGRKALNDLPKIQTLFGHH-VGITVNRSLNSHLGPEQILRNAANLI 529

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           +        I +  +ES           ++  LR +G+++ +DDFG   S  +YL    F
Sbjct: 530 ATQPCHAKSITVELTESAYFDFHTHGNQVIENLRAMGVTIAIDDFGKGFSSFTYLTECQF 589

Query: 879 DTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   ++G     +R AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q
Sbjct: 590 DFLKIDREFVSGIEIGSRRYAIVKMMTDLAHTLGVKVVAEGVETEYEVHVLKSLGVDLLQ 649

Query: 937 DSHVASPLGFNSILKLL--KERFPLVKN 962
                 PL  ++++  +  ++ F L   
Sbjct: 650 GFFFTEPLPLHNLIHAMEYRKHFKLATR 677


>gi|237730534|ref|ZP_04561015.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
 gi|226906073|gb|EEH91991.1| diguanylate cyclase/phosphodiesterase [Citrobacter sp. 30_2]
          Length = 255

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+  S+LY+VY PI  L  + I G EAL++W+ P+ G IS   F+ + E+   I 
Sbjct: 9   TALEKALNTSQLYMVYQPIFNLHAQRISGFEALMRWNSPQMGMISPDVFITLLEDSGNII 68

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
           +I   +         SW D     PI + +NI++ +  D  L + ++  ++ +     R 
Sbjct: 69  SIEDMVTHSPWDVATSWPD-----PIVLSVNISALEFCDPLLPQRVRQNLATSGLPVHRC 123

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +E+  + + + +   +  L+ IG+ L LDDFGT  + L+YL   PFDT+K +   +
Sbjct: 124 QIEVTETSPLCDSQIAAKNMTELKAIGVKLALDDFGTGHANLNYLLKYPFDTLKIDKEFV 183

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           TG      +  I+  II +A N    ++A+ +  +  ++ L ++GCD IQ   ++ P+  
Sbjct: 184 TGIEPDTRSTKIVEGIISLAHNFGIEVLAEGVETQSQLERLMQIGCDKIQGFFISPPVLA 243

Query: 947 NSILKLLKERF 957
             I  LL +  
Sbjct: 244 EEIPSLLAQYN 254


>gi|312967686|ref|ZP_07781901.1| EAL domain protein [Escherichia coli 2362-75]
 gi|312287883|gb|EFR15788.1| EAL domain protein [Escherichia coli 2362-75]
          Length = 729

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTRLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNIGLDMGYGAAWGHFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|149193759|ref|ZP_01870857.1| ggdef family protein [Caminibacter mediatlanticus TB-2]
 gi|149135712|gb|EDM24190.1| ggdef family protein [Caminibacter mediatlanticus TB-2]
          Length = 731

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 173/418 (41%), Gaps = 46/418 (11%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D+LTG+ NR   LD +               +++++DI  +  IN++ G   GD +L 
Sbjct: 352 YYDDLTGVGNRNKLLDEIEEY-----------NSLILVDIYNFSMINEIYGFEYGDKLLK 400

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           + ++ I +     + + R+  + F + L  +     I      + K + + IN+   +I 
Sbjct: 401 NFSKIIKQKF---EHIYRIGSDEFALGLEKKVKIEDIHTLL-KISKKMKIDINIGASKIK 456

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHA-KHRGGNHVESFRVSSFRSDRVMIKEDLC 712
                              +L+ +E+A+  A KH     +    +   + +++     L 
Sbjct: 457 P------------------LLQTSEIALKEAQKHNKTYLIYDKLMYKIQKEKLDKINLLK 498

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             +    +   Y  I+   +  ++  EAL++  +     +   EFM I +E  + +  + 
Sbjct: 499 EILNIESIIPYYQCIVD-KNLNVIKYEALMRLSYDNKIYLPF-EFMEILKESHLYEMFSK 556

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            M++R+  D+ + +         + IN++ +D++  +  E +   +S       R+    
Sbjct: 557 LMIKRVFNDLENNKISN------LSINLSFEDIIHKDTREFI---LSYNESLLKRVTFEI 607

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST 892
            ES  + +       L  L++ G  + +DDFG+  S    +  I  D +K + +L+   +
Sbjct: 608 LESEEIKDYNIVHSFLNELKERGSKIAIDDFGSGYSNFVEILKINPDYIKIDANLIKNLS 667

Query: 893 EKR-IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           E +   I++ I+   ++     IA+ +  E   ++L R+  DY Q  +   P   N +
Sbjct: 668 EDKYYKIIKLIVEFCEDFNIYSIAEFVENEEIFEKLKRLNIDYFQGYYFCKPKPLNEL 725


>gi|291540755|emb|CBL13866.1| FOG: EAL domain [Roseburia intestinalis XB6B4]
          Length = 457

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 165/430 (38%), Gaps = 18/430 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +  ++ F   +   +         +  V+ ++ID    IN + G    D +   +
Sbjct: 31  DALTDLYGQKKFEKDVEGYIRT-----GRKVAVLEVEIDHMADINILYGANYTDRLQREI 85

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
                 ++     +  ++ +    IL    + +    F   +RK++   I L  R   + 
Sbjct: 86  AHHFIYMMDENKAVYHMNNSNCAFILRD-ADRVDAGIFLEEVRKNLEKNITLNGRHFELK 144

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
                    +    +  +    E  +  A+    + +  F      +  V +  D    +
Sbjct: 145 LYAAGLMLENYSGETMTVQSKLEYTLEKARSARNHKLVFFNDIVKTNGGVNL--DFMKII 202

Query: 716 EN------SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
                      Y+ Y PI+     +I G EAL++W    +G +    F+   E+   +  
Sbjct: 203 HQSVLGGCDGFYVEYQPIVTSEGGKIAGAEALVRWKKEPYGAVPPGLFIDWIEDNPCMYD 262

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L    ++   +      P  FI +N+++K L      + + +L+ +  Y P+ + 
Sbjct: 263 LGNYVLAEALKNSAEFIK--INPDFFINVNVSAKQLEQKSFRDVVLSLLKENDYPPNHLC 320

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E       +     +  L++ GI   +DD+GT  +  S +  +P + +K + S + 
Sbjct: 321 LEITERCRQLPIDVINEEVCFLQQYGIHFAMDDYGTGNASSSIVLGVPMNEIKIDMSFIK 380

Query: 890 GS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G    EK+  ++++I+  A++       + +  +     L   G  + Q  + + P+G  
Sbjct: 381 GILNNEKQQMLVKNIVNFARSTNMKSCIEGVEDKSLQDYLRSFGATWFQGYYYSKPVGEE 440

Query: 948 SILKLLKERF 957
            + KLL E  
Sbjct: 441 QLKKLLLEEM 450


>gi|119945531|ref|YP_943211.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
 gi|119864135|gb|ABM03612.1| diguanylate cyclase with PAS/PAC sensor [Psychromonas ingrahamii
           37]
          Length = 654

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 7/353 (1%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W + F        ++   L   +    +   ++L+++++  T+             I  D
Sbjct: 305 WTIPFYSTSVFEKSVENNLAKLVGISGIFVSVLLLIVMLNITITGKKSMQAKAELEILID 364

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
             R   A       +WDWD+ ++ +T    +  + GL           W+  +HI+DR +
Sbjct: 365 --RLKAAASAGIVGIWDWDVEKNILTWDSVMYKLYGLQKSDFEDLYEAWISRVHIDDRMH 422

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
               + + + + R     EFRV   D+  H++    +   +  G  +R +G+  DITEQK
Sbjct: 423 IDGEIQAALRHERE-YCPEFRVLWPDSSVHYIKAVSKTTFDEIGKPIRMVGVNYDITEQK 481

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           K    +   A  D+LT +PNR+   DRL   +  S         ++ ID+D +K IND  
Sbjct: 482 KIQMRLDKEASYDHLTHLPNRRLLNDRLKQAIAFSKRTQK-NLAILFIDLDGFKSINDSH 540

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  VGD +L  +++RI   L+  D + RL G+ F ++L          + A  +  S+  
Sbjct: 541 GHQVGDWLLTEVSKRIQYCLRATDTVGRLGGDEFVVVLPEI--YENAKEVANKILNSLEE 598

Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           P  +     + +++SIG A +     + + +++ A+ AMY AK RG N V  F
Sbjct: 599 PFVITNNGVLHISSSIGVAIYPLDAKSQTMLMECADKAMYEAKKRGRNKVVFF 651


>gi|77918682|ref|YP_356497.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544765|gb|ABA88327.1| sensory box/GGDEF family protein [Pelobacter carbinolicus DSM 2380]
          Length = 808

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 143/315 (45%), Gaps = 7/315 (2%)

Query: 392 ATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRD--RVTTTPDIATILGLASGSMHG 447
            T   S+   +  +RQ L   V  S  + + W +         + +I    G        
Sbjct: 460 RTRAESELRATSAQRQELESIVNQSPAVAFLWRLRDKWAAEFVSDNI-RQFGYEPTDFTS 518

Query: 448 PIRNWLPYIHINDRDNFR-TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
              ++L  +H +D +      + +    R  +L  EFR+   +    W+ +R+    +  
Sbjct: 519 GKVDFLSIVHPDDVEKALSAAISAIKRGRDEQLSLEFRLIKYNGDIAWVDVRLWLGRDQG 578

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +  + G+  D++++KK+ E +   AF D LTG+PNR    +RL   L  +  D  +  
Sbjct: 579 DAVTHFQGVMLDVSDRKKAQEQVRQLAFYDALTGLPNRTLLANRLDQSLAQAQRDGRM-L 637

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D++K+IND  G A GD VL +  +R+   ++  D +ARL G+ F ++L    N
Sbjct: 638 ALLYLDLDRFKEINDTYGHAAGDMVLQAAAQRLNSCIRRNDTVARLGGDEFVVLLPGLEN 697

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
             +    A  + K + +P  +  +++ VT SIG   +         +LK A++AMY AK 
Sbjct: 698 VDQPTTVAEKILKVMKVPFQVESQQLNVTPSIGMVLYPEHGQELGVLLKRADIAMYAAKS 757

Query: 687 RGGNHVESFRVSSFR 701
           RG N    F     +
Sbjct: 758 RGRNGYACFSEEMEK 772


>gi|258619975|ref|ZP_05715015.1| transcriptional regulator, domain containing- EAL [Vibrio mimicus
           VM573]
 gi|258587708|gb|EEW12417.1| transcriptional regulator, domain containing- EAL [Vibrio mimicus
           VM573]
          Length = 288

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +  ++  A+   E      PI+ +    +   E L++W HP  G I    F+
Sbjct: 7   WRQGQINALDPEIRRAIRAQEFEPYIQPIMDIH-GRLASAEVLMRWQHPSAGLIRPDLFI 65

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   ++ ++   +  ++ +       I  NI++K  ++++L +  Q  +
Sbjct: 66  PLAEESGLIVPMTSQVMAKVRDQLGPYQSKIP-SDFHISFNISAKHCVNSDLVKDCQHFL 124

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     PS + L  +E  ++ + E +R L  +L +IG+ L +DDFGT  S L+YL    F
Sbjct: 125 SAFN-HPSLLSLELTERELIEDTEEARKLFAKLNQIGVRLAIDDFGTGHSSLNYLQTFQF 183

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +       +A  I+ +++ +A+ +    +A+ I  E  +      G DY+Q
Sbjct: 184 DVLKIDQSFVRMIGSNAVASHIVDTLLNLAQRLNMQTVAEGIETEEQVTYFAARGVDYMQ 243

Query: 937 DSHVASPLGFNSILKLL 953
               ASP+  +  L  L
Sbjct: 244 GYFYASPMPMDDFLTHL 260


>gi|262172152|ref|ZP_06039830.1| Rtn protein [Vibrio mimicus MB-451]
 gi|261893228|gb|EEY39214.1| Rtn protein [Vibrio mimicus MB-451]
          Length = 528

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +  ++  A+   E      PI+ +    +   E L++W HP  G I    F+
Sbjct: 247 WRQGQINALDPEIRRAIRAQEFEPYIQPIMDIH-GRMASAEVLMRWQHPSAGLIRPDLFI 305

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   ++ ++   +  ++ +       I  NI++K  ++++L +  Q  +
Sbjct: 306 PLAEESGLIVPMTSQVMAKVRDQLGPYQSKIP-SDFHISFNISAKHCVNSDLVKDCQHFL 364

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     PS + L  +E  ++ + E +R L  +L +IG+ L +DDFGT  S L+YL    F
Sbjct: 365 SAFN-HPSLLSLELTERELIEDTEEARKLFAKLNQIGVRLAIDDFGTGHSSLNYLQTFQF 423

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +       +A  I+ +++ +A+ +    +A+ I  E  +      G DY+Q
Sbjct: 424 DVLKIDQSFVRMIGSNAVASHIVDTLLNLAQRLNMQTVAEGIETEEQVTYFAARGVDYMQ 483

Query: 937 DSHVASPLGFNSILKLL 953
               ASP+  +  L  L
Sbjct: 484 GYFYASPMPMDDFLTHL 500


>gi|209764314|gb|ACI80469.1| hypothetical protein ECs3273 [Escherichia coli]
          Length = 742

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 330 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 380

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 381 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 437

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 438 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 497

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 498 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEVLARLKYDGGIMTPDKFLPL 554

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 555 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 612

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 613 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 672

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 673 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 732

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 733 LIGRPQPLAD 742


>gi|293607704|ref|ZP_06690035.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
 gi|292813842|gb|EFF72992.1| sensory box protein [Achromobacter piechaudii ATCC 43553]
          Length = 543

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 118/271 (43%), Gaps = 5/271 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F     + +R+  KE L  A+  +E  + Y P+   +  +  G EAL++W+ P  G +  
Sbjct: 254 FAAYRLQLNRLSFKEQLRRAMLANEFQVYYQPVYGQLTGQCEGAEALMRWNRPGVGFVRP 313

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AE   MI  +   +L  I RD+ SW      P   I +NIA + L  N L   M
Sbjct: 314 DIFIAAAEAEGMIIPLTQHLLRLIERDMRSW---TTPPDFHIGVNIAPEHLSSNVLVPDM 370

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           Q  ++        + L  +E  ++ +  ++R  +  LR  G+ + +DDFGT    LSYL 
Sbjct: 371 QTFLANVAARRPLLVLEITERSLIQDSGQARRNIDALRAAGVRVAIDDFGTGHCSLSYLQ 430

Query: 875 YIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D +K +   +       +   +L  II ++  +   ++A+ +  ++    LT  G 
Sbjct: 431 KFPVDYLKIDKGFVQSILPTGEEAPVLDVIITLSHRLNLAVVAEGVETQVQFDYLTARGV 490

Query: 933 DYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            +IQ    A P+     +    +  P    +
Sbjct: 491 AFIQGYLFARPMPAAEFMPWYAQHSPPGATS 521


>gi|194440116|ref|ZP_03072168.1| diguanylate cyclase [Escherichia coli 101-1]
 gi|253772698|ref|YP_003035529.1| diguanylate cyclase/phosphodiesterase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162386|ref|YP_003045494.1| putative diguanylate cyclase [Escherichia coli B str. REL606]
 gi|194420958|gb|EDX36993.1| diguanylate cyclase [Escherichia coli 101-1]
 gi|242378010|emb|CAQ32781.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|253323742|gb|ACT28344.1| diguanylate cyclase/phosphodiesterase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974287|gb|ACT39958.1| predicted diguanylate cyclase [Escherichia coli B str. REL606]
 gi|253978454|gb|ACT44124.1| predicted diguanylate cyclase [Escherichia coli BL21(DE3)]
 gi|323961204|gb|EGB56816.1| EAL domain-containing protein [Escherichia coli H489]
 gi|323970908|gb|EGB66159.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 729

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/431 (16%), Positives = 157/431 (36%), Gaps = 24/431 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I+     + +     +  +  ++ T   +L      AE +  H      +  E      
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVCGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + +   +  A++  +L L   PI     E   G + ++       G ++  +F+ 
Sbjct: 485 TTKQVL-LLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    +L +LE + + + +       P     +N+    LL   +   +  L  
Sbjct: 541 LIAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D
Sbjct: 599 RYHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q 
Sbjct: 659 IIKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQG 718

Query: 938 SHVASPLGFNS 948
             +  P     
Sbjct: 719 YLIGRPQPLAD 729


>gi|291283630|ref|YP_003500448.1| hypothetical protein G2583_2927 [Escherichia coli O55:H7 str.
           CB9615]
 gi|209764308|gb|ACI80466.1| hypothetical protein ECs3273 [Escherichia coli]
 gi|209764310|gb|ACI80467.1| hypothetical protein ECs3273 [Escherichia coli]
 gi|209764312|gb|ACI80468.1| hypothetical protein ECs3273 [Escherichia coli]
 gi|209764316|gb|ACI80470.1| hypothetical protein ECs3273 [Escherichia coli]
 gi|290763503|gb|ADD57464.1| hypothetical protein G2583_2927 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 742

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 330 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 380

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 381 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 437

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 438 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 497

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 498 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEVLARLKYDGGIMTPDKFLPL 554

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 555 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 612

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 613 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 672

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 673 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 732

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 733 LIGRPQPLAD 742


>gi|15802936|ref|NP_288964.1| hypothetical protein Z3660 [Escherichia coli O157:H7 EDL933]
 gi|12516771|gb|AAG57520.1|AE005470_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 742

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 330 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 380

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 381 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 437

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 438 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 497

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 498 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEVLXRLKYDGGIMTPDKFLPL 554

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 555 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 612

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 613 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 672

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 673 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 732

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 733 LIGRPQPLAD 742


>gi|193069754|ref|ZP_03050705.1| diguanylate cyclase [Escherichia coli E110019]
 gi|194428646|ref|ZP_03061184.1| diguanylate cyclase [Escherichia coli B171]
 gi|218696036|ref|YP_002403703.1| putative diguanylate cyclase [Escherichia coli 55989]
 gi|260845041|ref|YP_003222819.1| putative diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|192956956|gb|EDV87408.1| diguanylate cyclase [Escherichia coli E110019]
 gi|194413369|gb|EDX29653.1| diguanylate cyclase [Escherichia coli B171]
 gi|218352768|emb|CAU98554.1| putative diguanylate cyclase [Escherichia coli 55989]
 gi|257760188|dbj|BAI31685.1| predicted diguanylate cyclase [Escherichia coli O103:H2 str. 12009]
 gi|323159445|gb|EFZ45428.1| EAL domain protein [Escherichia coli E128010]
 gi|323184297|gb|EFZ69673.1| EAL domain protein [Escherichia coli 1357]
 gi|323944892|gb|EGB40958.1| AL domain-containing protein [Escherichia coli H120]
 gi|324118133|gb|EGC12031.1| EAL domain-containing protein [Escherichia coli E1167]
          Length = 729

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMINILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|300820935|ref|ZP_07101085.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 119-7]
 gi|300903125|ref|ZP_07121060.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 84-1]
 gi|301304768|ref|ZP_07210875.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 124-1]
 gi|301648050|ref|ZP_07247815.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 146-1]
 gi|309794552|ref|ZP_07688975.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 145-7]
 gi|332278447|ref|ZP_08390860.1| conserved hypothetical protein [Shigella sp. D9]
 gi|300404851|gb|EFJ88389.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 84-1]
 gi|300526688|gb|EFK47757.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 119-7]
 gi|300839999|gb|EFK67759.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 124-1]
 gi|301073843|gb|EFK88649.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 146-1]
 gi|308122008|gb|EFO59270.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 145-7]
 gi|315256414|gb|EFU36382.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 85-1]
 gi|323377691|gb|ADX49959.1| diguanylate cyclase/phosphodiesterase [Escherichia coli KO11]
 gi|332100799|gb|EGJ04145.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 749

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|262402835|ref|ZP_06079396.1| Rtn protein [Vibrio sp. RC586]
 gi|262351617|gb|EEZ00750.1| Rtn protein [Vibrio sp. RC586]
          Length = 526

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 5/258 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +  ++  A++  E      PI+      +   E L++W HP  G +    F+
Sbjct: 247 WRQGKANALAPEIRRAIQAQEFEPFIQPIMDNYGRMVRA-EVLMRWQHPTAGLVRPDLFI 305

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   ++ ++   +  ++ +       I  NI++K  + + L +  Q  +
Sbjct: 306 PLAEESGLIVPMTTQLMAKVRDQLAPYQSKIAD-DFRISFNISAKHCVGSNLVQDCQQFL 364

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     PS + L  +E  ++ + E +R L   L +IG+ L +DDFGT  + L+YL    F
Sbjct: 365 SAFE-HPSLLSLELTERELIEDTEEARKLFSELNQIGVRLAIDDFGTGHASLNYLQQFQF 423

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +           I+ +++ +A  +E   +A+ I            G DY+Q
Sbjct: 424 DVLKIDQSFVRMIGSNAVSSHIVDTLLDLAHRLEMQTVAEGIETAEQAAYFASRGVDYMQ 483

Query: 937 DSHVASPLGFNSILKLLK 954
               A P+  +  L  L 
Sbjct: 484 GYFYAKPMPMDDFLTHLA 501


>gi|262165088|ref|ZP_06032825.1| Rtn protein [Vibrio mimicus VM223]
 gi|262024804|gb|EEY43472.1| Rtn protein [Vibrio mimicus VM223]
          Length = 528

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +  ++  A+   E      PI+ +    +   E L++W HP  G I    F+
Sbjct: 247 WRQGQINALDPEIRRAIRAQEFEPYIQPIMDIH-GRMASAEVLMRWQHPSAGLIRPDLFI 305

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   ++ ++   +  ++ +       I  NI++K  ++++L +  Q  +
Sbjct: 306 PLAEESGLIVPMTSQVMAKVRDQLAPYQSKIP-SDFHISFNISAKHCVNSDLVKDCQHFL 364

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S    +PS + L  +E  ++ + E +R L  +L +IG+ L +DDFGT  S L+YL    F
Sbjct: 365 SAFN-NPSLLSLELTERELIEDTEEARKLFAKLNQIGVRLAIDDFGTGHSSLNYLQAFQF 423

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K +   +       +A  I+ +++ +A+ +    +A+ I  E  +      G DY+Q
Sbjct: 424 DVLKIDQGFVRMIGSNAVASHIVDTLLNLAQRLNMQTVAEGIETEEQVTYFAARGVDYMQ 483

Query: 937 DSHVASPLGFNSILKLL 953
               ASP+  +  L  L
Sbjct: 484 GYFYASPMPMDDFLTHL 500


>gi|256021907|ref|ZP_05435772.1| putative diguanylate cyclase [Escherichia sp. 4_1_40B]
          Length = 729

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|152987292|ref|YP_001346671.1| hypothetical protein PSPA7_1286 [Pseudomonas aeruginosa PA7]
 gi|150962450|gb|ABR84475.1| rtn protein [Pseudomonas aeruginosa PA7]
          Length = 521

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 3/249 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A++ +E    Y P+        +G+E L++W HP+ G I    F+  AE   +I  
Sbjct: 264 ELRRALDANEFIPYYQPLSPGQGGAWIGVEVLMRWRHPREGLIRPDLFIPFAERSGLIVP 323

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++ ++A D+         P   I  NI++    +  L +  + L++        + 
Sbjct: 324 MTRALMRQVAEDLGG-HAGKLEPGFHIGFNISATHCHELALVDDCRELLAAFPPGHITLV 382

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E  ++ +   +  L   L ++G+ + +DDFGT  S L+YL     D +K + S + 
Sbjct: 383 LELTERELIESSAVTDRLFAELHELGVKIAIDDFGTGHSSLAYLRKFQVDCLKIDQSFVA 442

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             G       IL SI+ ++  ++  I+A+ +        L   G DY+Q   +  P+   
Sbjct: 443 RIGIDTLSGHILDSIVELSAKLDLDIVAEGVETPEQRDYLAARGVDYLQGYLIGRPMPLE 502

Query: 948 SILKLLKER 956
           S L  L  +
Sbjct: 503 SFLASLSAQ 511


>gi|242239054|ref|YP_002987235.1| diguanylate phosphodiesterase [Dickeya dadantii Ech703]
 gi|242131111|gb|ACS85413.1| diguanylate phosphodiesterase [Dickeya dadantii Ech703]
          Length = 500

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 4/250 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+ N E+   Y P+I     E+ G E L +W HPK G IS   F+ ++E+  +I 
Sbjct: 251 EALKRAIRNQEIVPFYQPVISTQSRELYGFEVLARWYHPKTGFISPDVFIPLSEQSGLII 310

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ER+  D+IS +D      + I INI++K        +  +  I        R+
Sbjct: 311 PLTRLLMERVINDLISCQDILP-EDLHIGINISAKHCQYEGFIDDCKYFIDALGTRKIRL 369

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E   +     +      L+  GI + LDDFGT  S   YL  +  D +K + S +
Sbjct: 370 MVEITEREKIEITPTTLRFFQNLKAAGILIALDDFGTGYSNFDYLRQLQADLIKIDQSFI 429

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
           +   E   +  ++  +I +A+N+    IA+ +  E   + L+    DY+Q    + PL F
Sbjct: 430 SMIDENSQSTPLVNCVIDLAQNMNLKTIAEGVETEFQAEFLSEKNIDYLQGYLFSRPLPF 489

Query: 947 NSILK-LLKE 955
           +  +K  L++
Sbjct: 490 DECVKTWLQK 499


>gi|89073544|ref|ZP_01160066.1| hypothetical protein SKA34_12725 [Photobacterium sp. SKA34]
 gi|89050571|gb|EAR56057.1| hypothetical protein SKA34_12725 [Photobacterium sp. SKA34]
          Length = 870

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 183/415 (44%), Gaps = 8/415 (1%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDR 461
              +  S A   S + V   D              +       + G   +     +I+D+
Sbjct: 462 KKLQALSRAAEQSAESVIITDKNGFIQYVNTAYIKMSNKPLNQLIGSHSSISINDYIDDK 521

Query: 462 DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITE 521
           +    ++   V  +  R       +  DN   +M   I P+   +G+I  YI  + DIT+
Sbjct: 522 NEQDELISKLVSGQSIRHVIT---KKKDNDIIYMDYTISPIRGDDGNISNYIATSKDITD 578

Query: 522 QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIND 581
           +      +   A  D LT +PNR  F   +   +  +      +  ++VID++  K++N+
Sbjct: 579 RVSYENRLHRLAHYDALTQLPNRTMFTQYIAHSMKEAIRH-KAQIAIVVIDLELTKQLNE 637

Query: 582 VLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSI 641
            +     + +L+ +++RI   L+  D+LAR+  + FGI++ S ++   I   A  + KS 
Sbjct: 638 SMSNEDIEKILLIVSKRIKSNLRETDVLARIGSDEFGILIRSFHDLQTITQVAERLLKST 697

Query: 642 AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR 701
             P+++  + ++++ +IG A  + ++     + K A +A+Y AK   G++   F  S   
Sbjct: 698 NAPLSIDSQVLSISTNIGIALSSDAESDPKLIQKYAHIALYRAKGLSGSNYCYFTESMEA 757

Query: 702 SDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
            +     ++ DL  +V + +    Y P +      + G+EAL++W + +    S  + + 
Sbjct: 758 ENIQRLILESDLRKSVGSDQYEFFYQPKVNANTHTLCGVEALLRWKNNEGEYRSPLDVIP 817

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           + E   +I     +++ +    + SW+D        I INI+++ LL+ +L E +
Sbjct: 818 VLESSELIIDAGRYLINQACLQLKSWQDNKYFFD--IAINISARQLLEADLVETI 870


>gi|301328899|ref|ZP_07221935.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 78-1]
 gi|300844731|gb|EFK72491.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 78-1]
          Length = 729

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|62181070|ref|YP_217487.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128703|gb|AAX66406.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715553|gb|EFZ07124.1| putative diguanylate cyclase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 737

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLPSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|260856502|ref|YP_003230393.1| putative diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|257755151|dbj|BAI26653.1| predicted diguanylate cyclase [Escherichia coli O26:H11 str. 11368]
 gi|323156305|gb|EFZ42463.1| EAL domain protein [Escherichia coli EPECa14]
          Length = 729

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     +   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGD---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|182679810|ref|YP_001833956.1| diguanylate phosphodiesterase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635693|gb|ACB96467.1| diguanylate phosphodiesterase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 294

 Score =  265 bits (678), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 119/270 (44%), Gaps = 8/270 (2%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               S    D   + EDL   ++     L Y PI  +   EIV +EAL +W H  +G I+
Sbjct: 1   MRDESKRMIDDRTLAEDLRKTLQTGGFVLHYQPIFAVETGEIVSVEALFRWTHRDYGEIA 60

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
               + + E   +I  +  ++L R   +   W      P + + +N++   L        
Sbjct: 61  PDRAIALTEACDLIIPLGEWVLRRACDEARQW------PFLDLCVNVSPLQLRHKGFLAS 114

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++++T + PSR+ L  +E+  +     +  LL +LR+ GI L LDDFG+  +    L
Sbjct: 115 LDRIVAETGFDPSRLVLEVTENHPLHYDAATLRLLAQLRQRGIRLALDDFGSGHASFDTL 174

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              PFD +K + S +    ++ +   +L++I+         + A+ +  +     L R+G
Sbjct: 175 RDFPFDKLKIDRSFIASSLTSLEDRLMLQAIVRAGVTCGLIVTAEGVETKEQNALLQRLG 234

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           CD +Q    +  +    ++ LL  +    +
Sbjct: 235 CDELQGFLFSPAVPPVDLMALLNRQKSASQ 264


>gi|320180392|gb|EFW55323.1| hypothetical protein SGB_02291 [Shigella boydii ATCC 9905]
          Length = 729

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|16761421|ref|NP_457038.1| hypothetical protein STY2744 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140882|ref|NP_804224.1| hypothetical protein t0354 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213579692|ref|ZP_03361518.1| hypothetical protein SentesTyph_00175 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|25512515|pir||AE0819 probable membrane protein STY2744 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503721|emb|CAD02705.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136507|gb|AAO68073.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 737

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALKNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ I  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYIESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|89109214|ref|AP_002994.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111428|ref|NP_416896.4| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157159235|ref|YP_001463733.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|170019314|ref|YP_001724268.1| diguanylate cyclase/phosphodiesterase [Escherichia coli ATCC 8739]
 gi|170082009|ref|YP_001731329.1| diguanylate cyclase [Escherichia coli str. K-12 substr. DH10B]
 gi|188493034|ref|ZP_03000304.1| diguanylate cyclase [Escherichia coli 53638]
 gi|191165548|ref|ZP_03027389.1| diguanylate cyclase [Escherichia coli B7A]
 gi|209919881|ref|YP_002293965.1| hypothetical protein ECSE_2690 [Escherichia coli SE11]
 gi|218554936|ref|YP_002387849.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|238901563|ref|YP_002927359.1| putative diguanylate cyclase [Escherichia coli BW2952]
 gi|256017446|ref|ZP_05431311.1| hypothetical protein ShiD9_00925 [Shigella sp. D9]
 gi|260869097|ref|YP_003235499.1| putative diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|293446764|ref|ZP_06663186.1| yfeA protein [Escherichia coli B088]
 gi|300817362|ref|ZP_07097579.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 107-1]
 gi|300921999|ref|ZP_07138144.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|307139041|ref|ZP_07498397.1| hypothetical protein EcolH7_13068 [Escherichia coli H736]
 gi|307315326|ref|ZP_07594899.1| diguanylate cyclase/phosphodiesterase [Escherichia coli W]
 gi|312973356|ref|ZP_07787528.1| EAL domain protein [Escherichia coli 1827-70]
 gi|331669139|ref|ZP_08369987.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli TA271]
 gi|13638606|sp|P23842|YFEA_ECOLI RecName: Full=Uncharacterized protein YfeA
 gi|85675392|dbj|BAA16267.2| predicted diguanylate cyclase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082096|gb|AAC75454.2| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157081265|gb|ABV20973.1| diguanylate cyclase [Escherichia coli E24377A]
 gi|169754242|gb|ACA76941.1| diguanylate cyclase/phosphodiesterase [Escherichia coli ATCC 8739]
 gi|169889844|gb|ACB03551.1| predicted diguanylate cyclase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488233|gb|EDU63336.1| diguanylate cyclase [Escherichia coli 53638]
 gi|190904471|gb|EDV64179.1| diguanylate cyclase [Escherichia coli B7A]
 gi|209913140|dbj|BAG78214.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218361704|emb|CAQ99301.1| putative diguanylate cyclase [Escherichia coli IAI1]
 gi|238862234|gb|ACR64232.1| predicted diguanylate cyclase [Escherichia coli BW2952]
 gi|257765453|dbj|BAI36948.1| predicted diguanylate cyclase [Escherichia coli O111:H- str. 11128]
 gi|260448514|gb|ACX38936.1| diguanylate cyclase/phosphodiesterase [Escherichia coli DH1]
 gi|291323594|gb|EFE63022.1| yfeA protein [Escherichia coli B088]
 gi|300421617|gb|EFK04928.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|300529988|gb|EFK51050.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 107-1]
 gi|306905302|gb|EFN35844.1| diguanylate cyclase/phosphodiesterase [Escherichia coli W]
 gi|309702688|emb|CBJ02017.1| putative signal transduction protein [Escherichia coli ETEC H10407]
 gi|310331951|gb|EFP99186.1| EAL domain protein [Escherichia coli 1827-70]
 gi|315061728|gb|ADT76055.1| predicted diguanylate cyclase [Escherichia coli W]
 gi|315137030|dbj|BAJ44189.1| putative diguanylate cyclase [Escherichia coli DH1]
 gi|315615649|gb|EFU96281.1| EAL domain protein [Escherichia coli 3431]
 gi|320185092|gb|EFW59872.1| hypothetical protein SGF_02624 [Shigella flexneri CDC 796-83]
 gi|320199966|gb|EFW74555.1| hypothetical protein ECoL_02800 [Escherichia coli EC4100B]
 gi|323177477|gb|EFZ63065.1| EAL domain protein [Escherichia coli 1180]
 gi|323936554|gb|EGB32842.1| AL domain-containing protein [Escherichia coli E1520]
 gi|323941100|gb|EGB37286.1| EAL domain-containing protein [Escherichia coli E482]
 gi|324016795|gb|EGB86014.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 117-3]
 gi|331064333|gb|EGI36244.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli TA271]
 gi|332093001|gb|EGI98067.1| EAL domain protein [Shigella boydii 3594-74]
          Length = 729

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|310825890|ref|YP_003958247.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Eubacterium limosum KIST612]
 gi|308737624|gb|ADO35284.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor
           [Eubacterium limosum KIST612]
          Length = 338

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 3/248 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+E         P   L  E IVG EAL++W       +  + F+   E+   I  +
Sbjct: 77  MNAALEEKAFEAFLQPKYELKGETIVGAEALVRWITEGEIFLYPNNFIPFFEKNGFIINL 136

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +L+M E++   I SWR       + + IN + + L +    E +  +        S +++
Sbjct: 137 DLYMFEKVCEIIHSWRSAGIKE-VAVSINFSRRHLANEGFAEELGKIADSWKVPRSLLEI 195

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES+ M N  + +     LR++G S+ LDDFG+  S L +L  +P DTVK + S    
Sbjct: 196 EVTESIAMENIVQIQRSFAALRRLGFSVALDDFGSGYSSLGFLKNMPIDTVKLDKSFFDR 255

Query: 891 STEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              ++    I++ I+ MA  ++  ++A+ I  E  +  L    CD +Q  + A P+    
Sbjct: 256 IENQQKFETIIKHILLMAHELDLRVVAEGIETEEQVNLLRHFDCDMVQGFYYAKPMKEAL 315

Query: 949 ILKLLKER 956
             + LK++
Sbjct: 316 FKEELKKQ 323


>gi|157161868|ref|YP_001459186.1| diguanylate cyclase [Escherichia coli HS]
 gi|157067548|gb|ABV06803.1| diguanylate cyclase [Escherichia coli HS]
          Length = 729

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYGRLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|303245877|ref|ZP_07332159.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
 gi|302492660|gb|EFL52528.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           fructosovorans JJ]
          Length = 357

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/301 (24%), Positives = 128/301 (42%), Gaps = 6/301 (1%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDR---VTTTPDIATILGLASGSMHGPIRNWL 453
            Q +    ER    +    D V+   +   R       P+   + G  +         WL
Sbjct: 36  EQALRQGEERYRRLLESVTDYVYTVQVANGRAVSTVHGPNCVAVTGYTAQEYQDNPLLWL 95

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
             +   DR          +      +  E R+   D    ++        +++G ++ Y 
Sbjct: 96  TMVPDEDRPAVLEHARQVLEGDPTPI--EHRIIHKDGTVRYVRNTPVVHRDASGALVAYD 153

Query: 514 GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           GI NDITE++++   I   +  D LTG+PNR  F+DRL   L L+    + R  V  ID+
Sbjct: 154 GIINDITERRRAEALITRMSLHDGLTGLPNRVLFMDRLRQTLRLAERS-HERAAVYFIDL 212

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADF 633
           D++K +ND  G   GD VL    RR+   ++  D +ARL G+ F  +  +  ++      
Sbjct: 213 DRFKGVNDAFGHETGDKVLQETARRLAGCVRRSDTVARLGGDEFVALTPAVGDADHAGVI 272

Query: 634 AIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           A  M   +  P ++   +  +  S+G A +    + + E+++ A+ AMY AK+ G N   
Sbjct: 273 AAKMVAVLRKPFSVSGHDCQLGGSVGVALYPEDGVRAGELVRRADAAMYAAKNAGRNAWR 332

Query: 694 S 694
            
Sbjct: 333 M 333


>gi|110806344|ref|YP_689864.1| hypothetical protein SFV_2451 [Shigella flexneri 5 str. 8401]
 gi|110615892|gb|ABF04559.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 729

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|284922358|emb|CBG35445.1| putative signal transduction protein [Escherichia coli 042]
          Length = 729

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YNISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|332088195|gb|EGI93317.1| EAL domain protein [Shigella boydii 5216-82]
          Length = 729

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGPCF--SVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|283834142|ref|ZP_06353883.1| sensory box/GGDEF domain/EAL domain protein [Citrobacter youngae
           ATCC 29220]
 gi|291070291|gb|EFE08400.1| sensory box/GGDEF domain/EAL domain protein [Citrobacter youngae
           ATCC 29220]
          Length = 255

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 7/250 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+  S+LY+VY PI  L  ++I G EAL++W+ P+ G IS   F+ + E+   I +
Sbjct: 10  ALEQALNTSQLYMVYQPIFDLRTQQISGFEALMRWNSPQMGMISPDIFITLLEDSGNIVS 69

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           I   +         SW D     P+ + +NI++ +  D  L + ++  ++ +  +P R +
Sbjct: 70  IEDMVARTPWDVATSWSD-----PLVLSVNISALEFCDPLLPQRVRNNLAVSGLAPHRCQ 124

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E+  + + + +   +  L+ IG+ L LDDFGT  + L+YL   PFDT+K +   + 
Sbjct: 125 IEVTETSPLRDSQVAAKNMTELKAIGVKLALDDFGTGHANLNYLLKYPFDTLKIDKEFVA 184

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G      +  I+  II +A N    ++A+ +  + ++  L ++GCD IQ   ++ P+   
Sbjct: 185 GIEPDTRSTKIVEGIISLAHNFGIEVLAEGVETQSELDRLMQIGCDKIQGFFISPPVLAE 244

Query: 948 SILKLLKERF 957
            I  LL +  
Sbjct: 245 EIPLLLTQYN 254


>gi|258627207|ref|ZP_05721995.1| Rtn protein [Vibrio mimicus VM603]
 gi|258580509|gb|EEW05470.1| Rtn protein [Vibrio mimicus VM603]
          Length = 528

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/257 (24%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             +     +  ++  A+   E      PI+ +    +   E L++W HP  G I    F+
Sbjct: 247 WRQGQINALDPEIRRAIRAQEFEPYIQPIMDIH-GRLASAEVLMRWQHPSAGLIRPDLFI 305

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            +AEE  +I  +   ++ ++   +  ++ +       I  NI++K  ++++L +  Q  +
Sbjct: 306 PLAEESGLIVPMTSQVMAKVRDQLGPYQSKIP-SDFHISFNISAKHCVNSDLVKDCQHFL 364

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
           S     PS + L  +E  ++ + E +R L  +L +IG+ L +DDFGT  S L+YL    F
Sbjct: 365 SAFN-HPSLLSLELTERELIEDTEEARKLFAKLNQIGVRLAIDDFGTGHSSLNYLQTFQF 423

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + S +       +A  I+ +++ +A+ +    +A+ I  E  +      G DY+Q
Sbjct: 424 DVLKIDQSFVRMIGSNAVASHIVDTLLNLAQRLNMQTVAEGIETEEQVTYFAARGVDYMQ 483

Query: 937 DSHVASPLGFNSILKLL 953
               ASP+  +  L  L
Sbjct: 484 GYFYASPMPMDDFLTHL 500


>gi|331673875|ref|ZP_08374638.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli TA280]
 gi|331069148|gb|EGI40540.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli TA280]
          Length = 749

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YNISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|315635351|ref|ZP_07890618.1| EAL domain protein [Arcobacter butzleri JV22]
 gi|315480336|gb|EFU71002.1| EAL domain protein [Arcobacter butzleri JV22]
          Length = 407

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 149/393 (37%), Gaps = 29/393 (7%)

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           V + DI  +  IN   G   G+ +L  ++ R+         +  L  + F        + 
Sbjct: 31  VAIFDITGFGNINHYYGYDFGEKILKMVSIRLENKFL-NGKIYYLGADIFAATSNETVSK 89

Query: 628 LKIADFAIAMRKSI-AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            +      ++       PI L   ++ +    G A         +E+L  AE A+   + 
Sbjct: 90  DRFVQAVKSIIWYFGYSPIELNGYKVYIPLRAGVAI------NYAELLFCAEYALKQTRV 143

Query: 687 RGGNHVESFRVSSFRSDR--VMIKEDLC------LAVENSELYLVYHPIIRLMDEEIVGL 738
              N V          +   + I+++L        A++  +  +    I    +++    
Sbjct: 144 LKHNLVVYDNEEHHICNPSSLSIEQELYWEMQIIQAIKKDKFEIFAQSINSQNEKK---Y 200

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E LI+    K   +S   F+  A+++ +   I   ++++                +   I
Sbjct: 201 EILIRMKDSKDDIVSPYFFINRAKKINLYNEITKKVIQKSFEF-------FEDKNVEFSI 253

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N +  D+L+ ++ + +   I +       + +  +ES  + N E     +  ++ +G+ +
Sbjct: 254 NFSISDILEKDVVDFLIQKIYEFDI-GYFLTIEITESEGIDNIEEVVSFIKIVKNLGVKI 312

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAK 916
            +DDFGT  S  SYL  +  D +K +GS++    + +   A++ +I+  A+ I    +A+
Sbjct: 313 AIDDFGTGYSNFSYLVKLQADFIKLDGSIIQEINKTKTAKAVVEAIVFFAQKIGIKTVAE 372

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +  +   +    +  DY Q      P     +
Sbjct: 373 FVSSKEIFETCKELNIDYFQGYWFDEPKNVKEL 405


>gi|254426991|ref|ZP_05040698.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Alcanivorax sp. DG881]
 gi|196193160|gb|EDX88119.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Alcanivorax sp. DG881]
          Length = 690

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/580 (18%), Positives = 223/580 (38%), Gaps = 22/580 (3%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGE-RQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           +L +++        +      S+ +  D E R SL +  S D +  + +    +    + 
Sbjct: 115 LLSLMVDRVIEFLRLRKELQHSEIVRHDAEKRLSLLMDQSRDAI-AYVLDGMHIHANDNY 173

Query: 435 ATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
             + G  ++  + G     +  +  +D    + +L S         + E +    +    
Sbjct: 174 VEMFGYESADDLAGVPI--MDMVSASDHAKLKQLLRSRAQDESQTHELECKGVNTEGGEF 231

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
                    S  +G+    I I     ++ +  E +   + +D +TG+ +R  F+DR+  
Sbjct: 232 DATFTFSA-STYDGEACTQIVIRAAGVDESEMAERLQEMSQKDQVTGLFSRSWFMDRVDE 290

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            +  +A +  L  TV+ + +D ++     LG+   DD+L S+   +   +     LAR+ 
Sbjct: 291 SVAQAANEGRLS-TVLYLRLDDFEHHQSGLGLDGADDILKSVAEWLRAEVGE-AHLARVD 348

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSE 672
           G  F  +L    +  + A+ A  +R  I   +  +  + + VTAS+G +       +S E
Sbjct: 349 GEDFA-VLQPVADMDEAAELAETLRAGIETLMPEVAAKTVHVTASVGVSFVREDARSSQE 407

Query: 673 MLKNAELAMYHAKHRGG-----NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
            L  A      A+           V              +   +  A+E     L Y P+
Sbjct: 408 TLTTALKCCNQAQRENAGKGNAVKVHDPMDDVAAGSSEAVAMQVRQALEQGAFSLRYQPL 467

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L DE     E  +     +   + + EFM +A +  ++  I+ +++    R   ++ +
Sbjct: 468 MSLEDEAEHAFEVFVNLPQKQGEAMEAKEFMSVAADQGLVGKIDRWVVLNAMRAAAAFSE 527

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P+ +++N+    L D  L + +   +       SR+   FSE       +++   
Sbjct: 528 -----PVSLVLNLNGASLADPSLADWLGKAMRAAKMDGSRVTFQFSEGDAATYLKQAGAF 582

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMA 906
             +++ +G  +++  FG          +IP   VKF GS     ++ +    L SII   
Sbjct: 583 AEKVKALGCGISISRFGGGLDPFKLFQHIPATMVKFEGSFTQELSKAEGRERLTSIIKQV 642

Query: 907 KNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLG 945
           K      +   +     ++ L  + G DY+Q  ++ +P+ 
Sbjct: 643 KEGNRKTVVGFVESAAQMQALWTLGGVDYLQGYYLQAPMD 682


>gi|204929527|ref|ZP_03220601.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321246|gb|EDZ06446.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 737

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 172/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R +   R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMTDSREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+ +    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLKQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E     +  +G D
Sbjct: 661 VNADILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|239993507|ref|ZP_04714031.1| sensory box/GGDEF family protein [Alteromonas macleodii ATCC 27126]
          Length = 745

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/742 (15%), Positives = 251/742 (33%), Gaps = 56/742 (7%)

Query: 226 WVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIA-LSSSLIIFLFMYLHWNRWHAKVGY 284
             VL  I +    L+  +   S      +    +  L+     FLF  L     H K+  
Sbjct: 30  LSVLRTILLIGVVLTSAIVAHSSYTAYVQELYYVMYLTLGFTAFLFATLSIGLKHIKIAS 89

Query: 285 ITFSGIACIAILFCMSFYYP-----MVTASIARITLASIVLYYTYFIIYHGMKGYERAVL 339
                    A L  + F             +  + +   VLY     I   +       L
Sbjct: 90  ACLVLAVVGASLCILFFTIDLESARYGLLLLFTLPIIVRVLYGVKASIATMLFNLIPYYL 149

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
           L+    +  ++ I + +  T      +I       + + V+ +  ++ +        S+ 
Sbjct: 150 LLNNTQVSPLFGIDITLPDTHTYLASLIFLFFNFCIPMAVLRVMSSLEKQSEHNLLQSKK 209

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG-LASGSMHGPIRNWLPYIHI 458
           +     R        G   +  D     +        ++      S    I++     H 
Sbjct: 210 LNKLVSRYQEIFNNGGTPSFFCDEQGRIIQANKAARALVKKYRPES--EYIQDLFSLSHP 267

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
                    ++          + EF+++ A             + +    ++      +D
Sbjct: 268 -----ITKGVNQHASIFNTP-EREFKLQPAS------------LEHHKKQLIHC----HD 305

Query: 519 ITEQKKS-------LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
           I+  KKS        +      + + LTG+ N   F     +   +          ++++
Sbjct: 306 ISANKKSLMEFDAFKKQQYEKHYFNELTGLKN-HHFWKIAESSESILNRH------IVLL 358

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            +   +++N   G + GD +L+S+   +         + +  G +F   +  ++ S +  
Sbjct: 359 KLANLREVNLQYGYSQGDQLLLSVASLLQSEFTNDVSVYQFPGAKFLFTVNGKHLSTQ-- 416

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE---LAMYHAKHRG 688
                + + +   + +     TV   + + +          +   AE   +A+  +    
Sbjct: 417 SIEHYLERRLPTSMVINSARGTVEHMLKWRAGHYHASREISLDAAAECCAIALSQSDEFA 476

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                S        +    K+ +   ++N  L L   P + L     VG E L +   PK
Sbjct: 477 PYISFSINTVKTIRENTQQKDKVKALLDNGCLALYLQPQVSLH-GVTVGYEVLARLKEPK 535

Query: 749 WG-NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
            G  +   +F+ + EE          +++     +  W       P  + IN++  +LL 
Sbjct: 536 SGTVLQPFQFLPLVEENKWEVLFTQKIIDGTLALLDKWPSNLPKVP--LAINLSGPELLS 593

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +   E +    S++     R+KL  +E+ V+ +   ++  L  L  +G ++ +DDFGT  
Sbjct: 594 DLFYEKLLRRFSESPELGERLKLELTETSVLASHYETKRRLTSLANVGATIIIDDFGTGH 653

Query: 868 SLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           + LS L  +    +K +   +    ++E+   I++  + +AK+++   IA+ +  +  ++
Sbjct: 654 ASLSQLIDMSASVIKVDREFVERVETSERHRKIVKMTLDLAKSLDMQTIAEGVETQAQLR 713

Query: 926 ELTRMGCDYIQDSHVASPLGFN 947
            L  MG +  Q      P    
Sbjct: 714 VLKDMGFNIFQGYLFGKPAPIE 735


>gi|331653824|ref|ZP_08354825.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli M718]
 gi|331048673|gb|EGI20749.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli M718]
          Length = 749

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|284048232|ref|YP_003398571.1| diguanylate phosphodiesterase [Acidaminococcus fermentans DSM
           20731]
 gi|283952453|gb|ADB47256.1| diguanylate phosphodiesterase [Acidaminococcus fermentans DSM
           20731]
          Length = 953

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 115/247 (46%), Gaps = 1/247 (0%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+EN  + + Y P+IR +  E+ GLEAL +W  P+ G +S + F+ + E+  +I 
Sbjct: 147 EHLEEALENHWIQVYYQPVIRTLTGELCGLEALARWVDPQVGFLSPASFIPVLEQARLIH 206

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++ ++LE + R +    D+       +  N++  D    ++   ++    K       +
Sbjct: 207 RLDAYVLEEVCRMLRERLDKNLCIT-PVSFNLSRYDFDSMDVFSVVENTRKKYSLPRDFL 265

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +ES +  N +     L +LR+ G  + LDDFG+  S L+ L     D +K +   +
Sbjct: 266 HVEITESTLAQNAQVVHQALDQLREKGYEIWLDDFGSGYSSLNVLKDYQVDLIKLDMGFL 325

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
              T K  +I+ S+I MAK++    + + +  +     L  MGC  +Q      P     
Sbjct: 326 RNFTAKSRSIIASVINMAKDLGVKTLVEGVETKEQADFLAAMGCGRMQGYFFGKPQPLAG 385

Query: 949 ILKLLKE 955
           +L  L+ 
Sbjct: 386 VLAHLEA 392



 Score = 68.8 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 93/260 (35%), Gaps = 13/260 (5%)

Query: 422 DIVRDRVTTTPDIATILGLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGR-L 479
           D  R  +  +       G AS   + G     + + H+++    +  LD     +    +
Sbjct: 690 DKERRFLGASKAFLRHYGFASEQEIIGKTDEDMNW-HLDNGPYRQDELDVLHKGKVVENI 748

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
             E  V+      H +     P+   +G I+  +G   D  +    L   L + F+D ++
Sbjct: 749 PGECIVK---GALHHIACYKWPIY-RDGQIVGLMGTFFDADQVYHELRKTLPSPFEDPVS 804

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK-INDVLGIAVGDDVLVSLTRR 598
           G+ NRQ FL+ +                +++++  ++ + +       +   ++    R 
Sbjct: 805 GLQNRQGFLNDMMET-QEQMEASGDSFCLILLE-SRFDEYLKKSYEAPLLRKLIHEEGRI 862

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA-- 656
           I E       ++RL  + F  IL  E +  +    A  ++  +     +    +TVT   
Sbjct: 863 IREEAGTNSSISRLFNSMFA-ILRREKDPKESEALARKIQARLQDIHQVEGNPVTVTFRW 921

Query: 657 SIGFASWTSSKITSSEMLKN 676
           SI  ++           ++ 
Sbjct: 922 SIVHSAEPRLGTDPKRKIRK 941


>gi|78356213|ref|YP_387662.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218618|gb|ABB37967.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 780

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/294 (26%), Positives = 131/294 (44%), Gaps = 8/294 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   S     S A+  S   V   D   + V   P    I G     + G     L   
Sbjct: 490 RRAQESRIRMLSEALEQSSVAVVVTDPAGNTVHLNPRYEEITGFTLHELQGRPLPLLA-- 547

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
                      L     ++  R + E +    D    W+ + + P+ +++G     + + 
Sbjct: 548 DPESSAPVWEAL-----HKGERWRQEIKSPRKDGDDRWLSVSVAPVVDNDGHPANIVLVL 602

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DITEQK+S E I   A  D LTG+PNR+ F+DRL   + +S  +  +R  V+ ID++ +
Sbjct: 603 EDITEQKRSEEHIRHLAMHDGLTGLPNRRLFMDRLRRSVAMSKRN-GVRFAVLFIDLNDF 661

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD VL ++  R+ + L+  D  AR+ G+ F ++L    ++  +A  +  
Sbjct: 662 KEINDTLGHEAGDHVLRTVAERLRQSLREVDTCARIGGDEFIVLLHDIRSNEDLAHASER 721

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +  +I+ PINL      V+ SIG A          +++ +A+ AMY  K     
Sbjct: 722 VSAAISTPINLNGTVRVVSGSIGIAVCPDDATDVDQIISHADHAMYRCKRNRRY 775



 Score = 49.6 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 400 IFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIN 459
           + +   +    + G  D+ W  D     +      A  L      + G     L      
Sbjct: 367 LRAYERQLHALLDGLPDMAWIKDAGSVYLAVNQAFADFLHRDPLDVPGRTDEDLW---PG 423

Query: 460 DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM--SNSNGDILRY--IGI 515
           +    +   D+    R   L+Y+  +  A     W  I  RP+   +++G+ +    +GI
Sbjct: 424 ELAANQRQSDADAMTRLADLRYDQWLAGAGGVSIWADIIKRPIMEKDASGNTVAVGTVGI 483

Query: 516 ANDITEQKKSLEGILCNA 533
           A DI++++     I   +
Sbjct: 484 ARDISQRRAQESRIRMLS 501



 Score = 43.0 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 11/109 (10%)

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAAD 489
               +  ILGL    +          +               +   R  +  E  +   D
Sbjct: 284 FNASVNDILGLTDTDLGMSAVLGGAILREE---------QEVLDTGRPVINAERTIPLHD 334

Query: 490 NQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            +    ++   P+ ++NG     +GI+ DIT  +     +   A  D L
Sbjct: 335 GRTVIGLVSKVPLLDANGQPQGVLGISADITNLRAYERQLH--ALLDGL 381


>gi|146305654|ref|YP_001186119.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
 gi|145573855|gb|ABP83387.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pseudomonas mendocina ymp]
          Length = 689

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 94/571 (16%), Positives = 209/571 (36%), Gaps = 12/571 (2%)

Query: 376 VLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           +++V       ++   A       +    +R  L +  S D +  +      +       
Sbjct: 115 LVLVAKRELANLEERRARRAAEVALREAEKRCQLLLESSVDAI-TYVHDGMHIYANRAYL 173

Query: 436 TILGLAS-GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW 494
            + G      + G     +  I   D+  F+  L ++     G  +   +   AD     
Sbjct: 174 ELFGYEDGEELEGMP--MIDLIASADQGAFKDFLKNYQSAE-GNAELNCQGVRADGSSFP 230

Query: 495 MIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTI 554
             +   P +  +G+    + +    T   +  E +   + QD +TG+ NR  FL+ +   
Sbjct: 231 AQMSFSP-ATYDGEPCIQV-VIRAETSNAELEEKLREISSQDLVTGLFNRSHFLELMDGA 288

Query: 555 LDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSG 614
            + + +      T+  I +D+Y  +   +G+A  D +L  L   +         LAR   
Sbjct: 289 AERAVSTGQPS-TLAYIRVDRYASLQGEIGLAGIDLLLTDLAGLLRAHFPADTQLARFGD 347

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
           + F  +L  +      A  A  ++K      ++  R    T S+G A  +     + E++
Sbjct: 348 DVFSALLPGQTPEQCQASLAALLKKVEGHLFDVSGRTAQTTLSVGVAGLSEKTAKAQEVV 407

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRV-MIKEDLCLAVENSELYLVYHPIIRLMDE 733
           + A        +     + +       +     +   +  A+EN+   L++ PII L  +
Sbjct: 408 ERAHRCADELTNGNAIKLFNPADELAAAASRGNLLAMVQQALENNSFRLLFQPIISLRGD 467

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
                E L++   P+   +   EF+  A+E  + + I+ +++    + +   R + +   
Sbjct: 468 ANEHYEVLLRLLSPQGEEVPPMEFLAAAKEAGLGEKIDRWVILNSIKLLADHRTKGHNTR 527

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
           +F+   ++S  L D  L   +   +         +   FSE   +   ++++ L   L +
Sbjct: 528 LFVH--LSSASLQDQTLLPWLSVALKAARLPSDALVFQFSEPDAIAYLKQAKALTQGLAE 585

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-TEKRIAILRSIIPMAKNIETT 912
           +   + L  FG   +  + L ++  D VK +GS             L++++         
Sbjct: 586 LHCKVALSQFGCALNPFNTLKHLHVDFVKIDGSFSQDLGNADNQEALKTLLSSLHAQAKL 645

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
            I   +     +  L + G ++IQ  ++  P
Sbjct: 646 TIVPFVESASVLATLWQAGVNFIQGYYLQGP 676


>gi|323170340|gb|EFZ55993.1| EAL domain protein [Escherichia coli LT-68]
          Length = 729

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|293410799|ref|ZP_06654375.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291471267|gb|EFF13751.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 729

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YNISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|126665474|ref|ZP_01736456.1| sensory box/GGDEF/EAL domain protein [Marinobacter sp. ELB17]
 gi|126630102|gb|EBA00718.1| sensory box/GGDEF/EAL domain protein [Marinobacter sp. ELB17]
          Length = 212

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 100/203 (49%), Gaps = 3/203 (1%)

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           GN++  EF+ IAE   +I  I  +++E+    +  W++  +     + +N++ +   D  
Sbjct: 2   GNVTPDEFIPIAERTGLIVPIGEYVIEQALGFLSEWQNA-HQRHYTMAVNLSPRQFRDKG 60

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L + +Q  +      P  ++   +E V+M         L  L K+G+ L++DDFGT  S 
Sbjct: 61  LMDFIQKSLGDANVKPDNLEFEITEGVLMIGKSYIDAALHELHKLGVKLSMDDFGTGYSS 120

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           LSYL    FD +K + S ++G T  +    ++++ I MA ++   ++A+ +     +  L
Sbjct: 121 LSYLRKYSFDVLKIDRSFVSGITLKKSDCDLVKATIAMAHSLGLLVVAEGVEIREQLTLL 180

Query: 928 TRMGCDYIQDSHVASPLGFNSIL 950
             +GCD  Q  + + P+    ++
Sbjct: 181 DELGCDLAQGYYFSKPIPAKELI 203


>gi|193062380|ref|ZP_03043475.1| diguanylate cyclase [Escherichia coli E22]
 gi|192932046|gb|EDV84645.1| diguanylate cyclase [Escherichia coli E22]
          Length = 729

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  +   +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKFYQLPGSELLLVLSGPETEGRLQHMINILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|323977420|gb|EGB72506.1| EAL domain-containing protein [Escherichia coli TW10509]
          Length = 729

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLMPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|15832527|ref|NP_311300.1| hypothetical protein ECs3273 [Escherichia coli O157:H7 str. Sakai]
 gi|168751438|ref|ZP_02776460.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|168770968|ref|ZP_02795975.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|168772767|ref|ZP_02797774.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|168780360|ref|ZP_02805367.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|168787312|ref|ZP_02812319.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|195938747|ref|ZP_03084129.1| hypothetical protein EscherichcoliO157_20358 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805718|ref|ZP_03248055.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208814242|ref|ZP_03255571.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|208819727|ref|ZP_03260047.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|209400107|ref|YP_002271879.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|217327423|ref|ZP_03443506.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588]
 gi|254794355|ref|YP_003079192.1| putative diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223156|ref|ZP_05937437.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259292|ref|ZP_05951825.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|13362743|dbj|BAB36696.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187771196|gb|EDU35040.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4196]
 gi|188014495|gb|EDU52617.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4113]
 gi|189002207|gb|EDU71193.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4076]
 gi|189360253|gb|EDU78672.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4486]
 gi|189372804|gb|EDU91220.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC869]
 gi|208725519|gb|EDZ75120.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4206]
 gi|208735519|gb|EDZ84206.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4045]
 gi|208739850|gb|EDZ87532.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4042]
 gi|209161507|gb|ACI38940.1| diguanylate cyclase [Escherichia coli O157:H7 str. EC4115]
 gi|217319790|gb|EEC28215.1| diguanylate cyclase [Escherichia coli O157:H7 str. TW14588]
 gi|254593755|gb|ACT73116.1| predicted diguanylate cyclase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191980|gb|EFW66625.1| hypothetical protein ECoD_00935 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641044|gb|EFX10525.1| hypothetical protein ECO5101_00211 [Escherichia coli O157:H7 str.
           G5101]
 gi|320646433|gb|EFX15356.1| hypothetical protein ECO9389_15354 [Escherichia coli O157:H- str.
           493-89]
 gi|320651702|gb|EFX20082.1| hypothetical protein ECO2687_02466 [Escherichia coli O157:H- str. H
           2687]
 gi|320657283|gb|EFX25088.1| hypothetical protein ECO7815_10059 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662987|gb|EFX30311.1| hypothetical protein ECO5905_18283 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667733|gb|EFX34644.1| hypothetical protein ECOSU61_22181 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340203|gb|EGD64007.1| hypothetical protein ECF_03919 [Escherichia coli O157:H7 str. 1125]
 gi|326344204|gb|EGD67965.1| hypothetical protein ECoA_02477 [Escherichia coli O157:H7 str.
           1044]
          Length = 729

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEVLARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|146307752|ref|YP_001188217.1| diguanylate cyclase [Pseudomonas mendocina ymp]
 gi|145575953|gb|ABP85485.1| periplasmic/7TM domain sensor diguanylate cyclase [Pseudomonas
           mendocina ymp]
          Length = 638

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/672 (13%), Positives = 190/672 (28%), Gaps = 86/672 (12%)

Query: 32  IEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS---ASSIRHRGDW 88
            E + +      +      +++ +          + +   + R       +        W
Sbjct: 37  AESLPLPIGQTPVLPGPYMQVWQDPQGQADFAQVSALPDSAWRDVGRRDASFGYGGSAYW 96

Query: 89  AVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDV 148
               L N        ++++ +  L     +  D      +     +     R       V
Sbjct: 97  LRLDLHNPHSRPFGWVLLIGNPLLDQLDAYGLDGER---VYRAGDQRPFDWRWVEHRQLV 153

Query: 149 FRITINPGAVVTFIMEISTPNLPQIY--LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206
             + +  G      + + T     +   L     +        L +G+  G    + ++ 
Sbjct: 154 LPLNLETGETRRIWLRMQTDGSANLSASLMTREAFDHQEQRSLLLQGLFFGALLAMFVYN 213

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSL 265
              + +      +           Y  I  GF  +           +    S    +   
Sbjct: 214 LSIFCITHDRNYLWYSLFVAGFSLYQFIQLGFALQWLWPNAMAWHQLSFPLSSALATLFG 273

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325
           I F    L  ++  A   ++  S  AC  ++  M+ + P   A        S +L     
Sbjct: 274 IHFTQGVLELDKAPAPYRWVVQSLKACTWLVVAMALFGPYTPAL-----FGSFILLGACA 328

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           +              +   +     F    +         +I  +L   L    +L    
Sbjct: 329 VAA-----------FLITLLRWRAGFAAARLFALGWFV--LIAASLASILSGTGLLPYSL 375

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +  H    G   +         S+A+                                  
Sbjct: 376 LTLHAQQIGGLIEMTV-----FSIALAA-------------------------------- 398

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
                              R I ++    +   +  E  +RA   Q   + ++ +   + 
Sbjct: 399 -----------------RIRHIQEAKRQAQTQLIAQERHLRAE--QARHLELQTQISESL 439

Query: 506 NGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +        + + +   +   +     +D LTG+ NRQ+  + LT     +      
Sbjct: 440 EQRVQERTATLQETLHQLSNANLRLAELNRRDGLTGLFNRQTLSEELTRACARAER-GKQ 498

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++++D+D +K++ND  G   GD  L    +RI + L+  D+LAR  G  F  +L + 
Sbjct: 499 SVAILMLDLDHFKQVNDRYGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEFVALLDNT 558

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF-ASWTSSKITSSEMLKNAELAMYH 683
           +    +             P    +  I ++ SIG  A            L  A+ A+Y 
Sbjct: 559 SLDGALDLAEQLRDDLARHPCPYQQHSIPLSLSIGLHAGVPHDPSCGEHWLDLADRALYR 618

Query: 684 AKHRGGNHVESF 695
           AK  G N V S+
Sbjct: 619 AKAGGRNQVVSY 630


>gi|289208578|ref|YP_003460644.1| diguanylate phosphodiesterase [Thioalkalivibrio sp. K90mix]
 gi|288944209|gb|ADC71908.1| diguanylate phosphodiesterase [Thioalkalivibrio sp. K90mix]
          Length = 412

 Score =  264 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 129/254 (50%), Gaps = 7/254 (2%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           +  + D+   ++++E +L Y PI  L     VG+EALI+W HP  G ++ ++F+ +AE+ 
Sbjct: 143 MRQEFDIRRGLKHNEFFLRYQPIYSLRQRRFVGVEALIRWQHPAHGELAPADFLDVAEDS 202

Query: 765 CMIKAINLFMLERIARDIISWR---DQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            +I  I   ++    R    W     +    P +  IN++++DL+  EL   + + +++ 
Sbjct: 203 SLIHDIGELVIAEGCRQAEEWATLAREQGRGPWYTAINLSARDLVRPELAYDVASALNRH 262

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P  + +  +ESV+    E +   L  L+ +G+ L +DDFGT  S L+YL   P DT+
Sbjct: 263 HLPPELLTIELTESVLA--LEDAEPALEALKHLGVHLAIDDFGTGYSSLAYLNRFPIDTL 320

Query: 882 KFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +  L++  G       + R I+ +A ++   ++A+ I     ++    +G D IQ  +
Sbjct: 321 KLDRQLVSRLGHDPSAEDLARGIVLLASSLGLKMVAEGIETLEQVERGQELGFDLIQGFY 380

Query: 940 VASPLGFNSILKLL 953
            A PL  + I  LL
Sbjct: 381 FARPLTADQIPSLL 394


>gi|311278669|ref|YP_003940900.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
 gi|308747864|gb|ADO47616.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae SCF1]
          Length = 726

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 158/432 (36%), Gaps = 26/432 (6%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
                   A +D LTG+PN ++    L                V  + +D  + ++   G
Sbjct: 316 LRRKWHNRAMEDPLTGLPNLRALECYLARF---------PEGRVCCLRMDNLEFLSRHYG 366

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
           + +       + + +  LL   + L +L G+   ++L  E  + +++     +    +  
Sbjct: 367 MMMRVYCKRMIAQDLQPLLYKNEQLFQLPGSELLLVLHGEETADRLSAMIDFLN---SRK 423

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFR 701
            +    E+ +     +             L         A               VS   
Sbjct: 424 YHWHNNELVLEFGASWGGIQGEGEALHHTLGQLSWLSEQACAARKVLALDCSLETVSDNT 483

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
           ++R+     +  A++  E+ L   PI+    +       ++         I    F+ + 
Sbjct: 484 TERLHQLNRVKRALDLGEICLYAQPIVSESGDV---YHEILTRLTCDGEIIMPDRFIPVV 540

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
            +  + K  ++ ++E + R + ++ ++         +N+    L+ NE    + AL  + 
Sbjct: 541 AQFNLSKRFDMQVVEMLFRAMEAFPNE------RFSVNLMPFTLMQNESANEIIALFQQY 594

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP  I L  +E     + E S + + RLR  G  + +DDFGT  +    L  +  D V
Sbjct: 595 RISPQSIVLEITEEQAFSDSEVSLVNIQRLRDFGCLIAIDDFGTGYANFERLKRLQADIV 654

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +G  +    E      I++SI  MA+    T++A+ +  +     L ++G DY+Q   
Sbjct: 655 KIDGCFVHDIMEDAMDAMIVKSICEMARVKNLTLVAEFVETDAQRALLYQLGVDYLQGYL 714

Query: 940 VASPLGFNSILK 951
           +  P     + +
Sbjct: 715 LGKPRPLAELRR 726


>gi|170684005|ref|YP_001744588.1| diguanylate cyclase [Escherichia coli SMS-3-5]
 gi|170521723|gb|ACB19901.1| diguanylate cyclase [Escherichia coli SMS-3-5]
          Length = 729

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   I+L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLIVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|307152027|ref|YP_003887411.1| diguanylate phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306982255|gb|ADN14136.1| diguanylate phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 472

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 131/248 (52%), Gaps = 3/248 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +  L  A+E  E  L Y P   L  ++I  LE L++W HPK G I   +F+ +AE+  +I
Sbjct: 218 ESSLQRALEKQEFALYYQPQYNLKTKKIDSLEVLLRWQHPKKGIILPHQFIPVAEKTELI 277

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I  ++L++  + +  W+ Q  +P + I +N+++K   D+ L   +  ++++T      
Sbjct: 278 IPIGEWVLKQACQQMKIWQ-QLGLPTLSISVNLSAKQFRDSNLMNMISRVLNETGIISQL 336

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           ++L  +E  +M N + +  +L  L+ +G+ L+LD+FG + + LSYL   PF TVK + S 
Sbjct: 337 LELEITEKTIMKNEDLANQILADLKNLGVRLSLDNFGREYASLSYLQKYPFHTVKLDQSF 396

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   T      A+L ++I   +  +  I+A  +  +  +K L+++  + IQ   ++ PL 
Sbjct: 397 IKNFTSSSQQLALLSAVIAWGRFTKLNIVAGGVETDEQLKLLSKLTFEKIQGYKISLPLT 456

Query: 946 FNSILKLL 953
                KLL
Sbjct: 457 VTDATKLL 464


>gi|266624854|ref|ZP_06117789.1| GGDEF family protein [Clostridium hathewayi DSM 13479]
 gi|288863271|gb|EFC95569.1| GGDEF family protein [Clostridium hathewayi DSM 13479]
          Length = 337

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/351 (22%), Positives = 145/351 (41%), Gaps = 20/351 (5%)

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
                + RLSG+ F I+ ++        +  + + K++   I L  R      S+G    
Sbjct: 2   FPEGDIFRLSGDEFVIVAMN-----MAYENFMKLVKNMG--IELDSRT-PSGVSLGTTWV 53

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
                    +L +AE  M   K               +       + L   VE     L 
Sbjct: 54  -EHLTDFDVLLHHAEELMLVNKQ----IYYKNSDEVRKHYSPEGLKLLVHDVEQGYYRLY 108

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
             P        +  +EAL ++  P     S  +F+ + E++ +I+ ++ +MLE + R + 
Sbjct: 109 LQPKFDPETGTVHSVEALSRYQAPGRDLQSPVKFVSLLEKMKLIRYLDFYMLEEVFRLLS 168

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
            W+ +   P I + +N +   LL+++L + +  + SK       + +  +E   +G+ E 
Sbjct: 169 RWKAE-GKPLIPVSVNFSRITLLESDLFQMLTEIQSKYDVPCDMVMIEITER--IGDMEH 225

Query: 844 -SRLLL-GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
                +  +LRK G  ++LDDFG   + +S L  + FD VK + SL+      EK   I+
Sbjct: 226 KVMESIGSKLRKAGFRISLDDFGADYANMSILSIMHFDEVKLDKSLVENLVENEKNQIIV 285

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           R II M + +    +A+ +  +  +  L   GC  IQ  + + P+     L
Sbjct: 286 RCIIEMCRRLHVDCVAEGVETKEQLDLLKEYGCTTIQGFYYSKPVDAEQFL 336


>gi|218705911|ref|YP_002413430.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|293405846|ref|ZP_06649838.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298381595|ref|ZP_06991194.1| yfeA protein [Escherichia coli FVEC1302]
 gi|300901362|ref|ZP_07119452.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 198-1]
 gi|301023632|ref|ZP_07187390.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 69-1]
 gi|331663957|ref|ZP_08364867.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli TA143]
 gi|218433008|emb|CAR13903.1| putative diguanylate cyclase [Escherichia coli UMN026]
 gi|291428054|gb|EFF01081.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298279037|gb|EFI20551.1| yfeA protein [Escherichia coli FVEC1302]
 gi|300355206|gb|EFJ71076.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 198-1]
 gi|300396935|gb|EFJ80473.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 69-1]
 gi|331059756|gb|EGI31733.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli TA143]
          Length = 729

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|163748729|ref|ZP_02155982.1| GGDEF domain protein [Shewanella benthica KT99]
 gi|161331839|gb|EDQ02643.1| GGDEF domain protein [Shewanella benthica KT99]
          Length = 621

 Score =  264 bits (675), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 116/695 (16%), Positives = 231/695 (33%), Gaps = 88/695 (12%)

Query: 11  FEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDG 70
            +   +I + F L   + S A   + +   +  L+L      Y    +   + +  D+  
Sbjct: 1   MKHLSIIFICFTLIFCAQSRAETILAVGDDNGALELAHWL-YYTPAKKADSIDSVKDLHS 59

Query: 71  ISRRIEVSASS--IRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRII 128
            S +    A +  I     W  F++ N     ++R++ + +  +   H +    G     
Sbjct: 60  RSWQRLTPAYNNRIGVEAFWVKFSIYNAKKIPIDRILSLANPHIDLIHLYHMVNGEMNDR 119

Query: 129 SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLPQIYLWEPN--FYKDTVN 186
            +         R   ++  ++   + PG + TF ++I T     + L   +   +   + 
Sbjct: 120 VIMGESLPFSQRPIINNHFIYPFQLEPGDLHTFYLKIETEGSASLPLSLSSPKTFAKNIE 179

Query: 187 SFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNL 245
           S +L  G  +G  + + +F     + +RS            V   ++   GF  +     
Sbjct: 180 SSSLTNGFQLGALTAIGLFSLFIAISSRSFSYSYYSGYVLSVTLLVATLHGFAFRFLWPQ 239

Query: 246 PSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY-YP 304
                         +    +++F    L     +  +  +   G A   IL  ++ +   
Sbjct: 240 WPLLQKYMIPFLIPSAIFFVLLFTEKVLQLKYHNLGMLRLCRYGAAFAVILALVTPFLNY 299

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDN 364
            ++  I  IT+  +        I    KG++ A L   AW  + I            ++ 
Sbjct: 300 SLSLYINIITVLIVTTLLMVMAIIQAFKGHKLAKLYTLAWSGMLIGSFVTSAMYLGLIEL 359

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
            +         +++ +L     +            I  + ER                  
Sbjct: 360 PVSYLTP----LMLGLLFEIIFM-------AAVLAIRYNDERI----------------- 391

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNF-RTILDSFVGYRRGRLQYEF 483
                        L     ++    R+    +H    +      L+  V  R   L+   
Sbjct: 392 -----------AKLKTQQEAVIQAQRSRETRVHALRIEAQSNENLEQMVQERTLELEVAL 440

Query: 484 RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPN 543
           R                                    E  ++ + +   A  D LTG+ N
Sbjct: 441 R------------------------------------ELNEANQKLTEKATIDGLTGVKN 464

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R +F  RL       +        ++++DID +K IND  G   GD  L  + + + E L
Sbjct: 465 RAAFDKRLLAE-GRLSRRQQTPMALLMLDIDNFKSINDNYGHLAGDQTLRLIAQILKEQL 523

Query: 604 -KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGF- 660
            +  D+++R  G  F IIL +          A  +R++I+   I   E  I++T SIG  
Sbjct: 524 KRPGDLVSRFGGEEFAIILPN-TGEEGAMQVAELIRQTISELSIRWKESSISLTISIGVS 582

Query: 661 ASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           A    ++   +++L  A+ A+Y AK+ G N V  +
Sbjct: 583 AEIIDTEQDPTQLLDQADKALYRAKNEGRNRVMVY 617


>gi|254458469|ref|ZP_05071894.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
 gi|207084777|gb|EDZ62064.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor
           [Campylobacterales bacterium GD 1]
          Length = 504

 Score =  264 bits (675), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 82/535 (15%), Positives = 184/535 (34%), Gaps = 56/535 (10%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQY 481
           DI  +          I G     + G   N L   H  +  +    + + +         
Sbjct: 10  DIYGNITYINQKFCDISGYKKEYLIGKKHNILR--HPKNSSSLYKEIWNTIKIENRTWHG 67

Query: 482 EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGI 541
               +   +   +M   I+P+ ++  +++ YI + +DI++                    
Sbjct: 68  TIMNKDKYDNSFYMDTMIKPIFDTQKNVIEYISLQHDISDVISP---------------- 111

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR--- 598
             R+   D +         ++++ P V++++I+ +  I    GI + + +          
Sbjct: 112 --RRLLNDFI---------NNSVEPMVVMMEIEHFGDIEKYYGIEISEKIEKKFETDFFD 160

Query: 599 IGELLKFPDILARLSGNRFGIILISENNS----LKIADFAIAMRKSIAMPINLLEREITV 654
           +       D +       + +      ++      IA+  I     +   +++   E  +
Sbjct: 161 LLPNHCEFDKIYSSGYGVYALAQDKTKSTYTTNEIIANIHILQNDILNTTLHIDMFEYDI 220

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF----RVSSFRSDRVMIKED 710
           +  I  A          + L NA   + + K+       +       S      + I   
Sbjct: 221 SVVISMAY-------GEDALLNARHGLMYLKNNNKRFTLANGLSKEESRKSQKNLEILTM 273

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+ +  +  ++ PII    + +   E+L++        IS   F+  A++      I
Sbjct: 274 IRKAINSLNIVSLFQPIINNKTKNVEKYESLVRLIDENGKVISPFYFLDTAKKGQYYSQI 333

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L+     +       N     I IN++  D+      E + +L+ K      R+  
Sbjct: 334 TSIVLDNSFLAL-------NNTDADISINLSILDIEKKATREKIYSLLEKHNKHLHRLVF 386

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E   + + +  +  +  ++ +G+ + +DDFG   S    L     D +K +GSL+  
Sbjct: 387 ELLEDEAVKDFDLVKSFIHNVKTMGVKIAIDDFGVGYSNFERLLEYQPDILKIDGSLIKN 446

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
             +      I+ +I+  AK      +A+ +  E     L  +G DY Q  +   P
Sbjct: 447 IDKNPLSFNIVETIVAFAKKEHILTVAEYVENEDIFNILNDLGIDYSQGYYFGKP 501


>gi|289673790|ref|ZP_06494680.1| GGDEF [Pseudomonas syringae pv. syringae FF5]
          Length = 293

 Score =  264 bits (675), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 149/288 (51%), Gaps = 8/288 (2%)

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED--LCLAVEN-SELYLVY 724
              +++L++A+ AMY  K+ G +    F  +  R     ++++  L  A++   +L   +
Sbjct: 1   QEPADLLRDADTAMYRVKNGGRDSFAVFNQALRREVSDQVEQEGALRTALKRTDQLIPYF 60

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            P+I +   +++  EALI+W  P    +    F+   E L +I  ++L+ML+R+   +  
Sbjct: 61  QPVICVNSGKLLAFEALIRWRMPDGRIVGPESFLPALEGLRLIGRLDLYMLKRVISILAQ 120

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
             + ++ PP  + +N +S  +        + AL+++   +P R+ L  +E  ++ +PE++
Sbjct: 121 -PENSHWPP--VHVNCSSYSITRPAFAAEVLALLAEQNVAPERLCLELTEGALVVDPEQA 177

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSI 902
           RL +  L + G+S+ LDDFG   S LSY+    F  +K + S + G T   +  AI+R+I
Sbjct: 178 RLSMKLLAEQGMSVMLDDFGAGFSSLSYVHQYHFSGLKIDKSFIFGLTSSVRSRAIVRAI 237

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           + MA++++ T++A+ +     ++ L  +G    Q  + + PL    + 
Sbjct: 238 VRMAESLDLTVVAEGVEDLETLELLREIGATQAQGYYFSEPLPIELLE 285


>gi|198245324|ref|YP_002216573.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197939840|gb|ACH77173.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 737

 Score =  264 bits (675), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 172/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  + N ++    L               T+  + +   + +
Sbjct: 317 TRQRVVSGRARRLAYLDPVVHLLNLRALNRALQNA---------PWSTICFLHVPGLELL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 368 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 427

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 428 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 485 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 543 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 601 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGID 720

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 721 YLQGYLIGEPQLLSEI 736


>gi|291614461|ref|YP_003524618.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
 gi|291584573|gb|ADE12231.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans
           lithotrophicus ES-1]
          Length = 581

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 180/492 (36%), Gaps = 24/492 (4%)

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLI 266
               ++  + +     A     L   + D      +V         WRA        + I
Sbjct: 108 LFILILLGALIPPVASA-VLGTLSLWASDMVT-PDIVPDAMW--QWWRADVLGIAFVTPI 163

Query: 267 IFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFI 326
           I +  +++      KV      G             +         +     + +    +
Sbjct: 164 ILV--FVNKKSSFFKVRGAWEMGALWAISFAVGQSVFLGWQPLGIMLNEELGLTWLFPLL 221

Query: 327 IYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
           I+ G++   R   L+   ++     +           +D  +  +    +  ++L    +
Sbjct: 222 IWAGLRTGRRNTGLLQ--LMFMSQVLAGAYLQKGYFSDDFTRYGMANFWLFAMLLAVAGM 279

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLG-----SGDIVWDWDIVRDRVTTTPDIATILGLA 441
              +LAT               +A+       S D +   D         P   T+ G  
Sbjct: 280 ALAILATA-------QRKAMHQIALNAKVSEVSNDGIVIVDEDNYIQDINPAFTTLTGYT 332

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
                G    +L        + +  +  S +    G  + E   R  D + +   + I  
Sbjct: 333 REDAIGRNPRFLSA-GKQSHEFYADMWKSLLE--VGHWEGEIWNRRKDGEIYLEKLSIYT 389

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + ++ G ++  +G+ +DIT+ +   E +  +A  D LTG+PNR  F DR    L L+   
Sbjct: 390 LKDAQGKVVNRVGVFSDITQSRVEQETVAHHAQHDFLTGLPNRLLFRDRFNQQLALAKRY 449

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
              +  VM ID+D++K +ND LG  VGD +L+++  R+   ++  D ++R  G+ F I++
Sbjct: 450 SK-KFAVMYIDLDRFKPVNDTLGHQVGDLLLMAVADRLKSQVREIDTVSRFGGDEFAILV 508

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                   +   A  +  ++  P  L    + ++ S+G A +    +    +L NA+ AM
Sbjct: 509 SEVVTQRDVTALAEKILAALKAPFVLENHTVNISGSLGIAIYPDDGMDMETILSNADTAM 568

Query: 682 YHAKHRGGNHVE 693
           Y AKH+G N   
Sbjct: 569 YKAKHKGANTYC 580


>gi|296104132|ref|YP_003614278.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058591|gb|ADF63329.1| diguanylate cyclase/phosphodiesterase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 746

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 179/447 (40%), Gaps = 25/447 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+   +     A  D +  +PN ++ L  L           N    + ++ I + + +
Sbjct: 317 TRQRAVNKRSRRLALLDPVVHMPNLRALLRDLAR---------NPWSALCLLRIPELEVL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L + +   L+  + +  L+G    + L +E++  +I      +++
Sbjct: 368 GRNYGVLLRILYKQQLAQWVNGTLQPNERVYHLTGYDLAVRLNAESHQQRIETLDEHIKQ 427

Query: 640 SIAMPINLLEREIT--VTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S  +     + +     E+   A+L++            + 
Sbjct: 428 F---RFIWDGMPLQPQVGMSYCYVRSPVNHLYLVLGELGVIADLSLSTNHPENLQQRGAV 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +     D++ +   L  A++N+E  L+  P+  L  +     E L++        ++  
Sbjct: 485 HLQRSLKDKIAMMSRLQKALDNNEFTLLAQPVRGLRGDR--YHEVLLRMPDADGVLLTPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A+E  +   ++L++LER  R +   RD+         IN+A   +   +    + 
Sbjct: 543 RFLPVAQEFGLSSRVDLWVLERTLRFLAEHRDRLPGQ--RFAINLAPSTVCRVQFPLEVS 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++K      ++    +E    G+ E++   L +L+K+G+ + +DDFGT  +  + L  
Sbjct: 601 RLLNKYAVEAWQLIFEVTECSTFGSAEQAMHTLRQLQKMGVRIAIDDFGTGYASYARLKS 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+  +  ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVETEEIRSAVHALGID 720

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLV 960
           Y+Q   +  P    ++  LL+    + 
Sbjct: 721 YVQGYLIGRP---EALESLLEAEASVA 744


>gi|331684053|ref|ZP_08384649.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli H299]
 gi|331079005|gb|EGI50207.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli H299]
          Length = 729

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|254502771|ref|ZP_05114922.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438842|gb|EEE45521.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 394

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 148/347 (42%), Gaps = 22/347 (6%)

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE-REITVTASIGFASWTSSKITS 670
           + G  F   L   +    I   +   ++ +     L E   + V  +I            
Sbjct: 61  MDGLEFLRHLAERDAPCAIILVSGEDKRILQTATQLAEAHRLKVLGAIQKPIKP----DP 116

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
            + L +  +A   A  RG                + ++  L   +E+  + + + P + +
Sbjct: 117 LKALLDKHVAQQSATRRGPIES------------LTLET-LKAGLESGAIDVFFQPKVAV 163

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            D +++G+EAL++W       I    F+ + EE  +I  +   + E+      +W+ +  
Sbjct: 164 PDRKLIGVEALVRWRGEDGKLIPPIAFVPVIEEHGLIDEMTRQVFEKSMVASAAWQKKGL 223

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              I + +N +   L   E+ + + A I+K    P  + +  +ES +M +      +L R
Sbjct: 224 D--IKVAVNFSVDSLTRYEVFDLVIAAIAKEGIDPHSVIIEVTESRIMEDVAAPLEILTR 281

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           LR  G+ L +DD+GT  S +  L  IPF  +K + + + G+   E+  A+L S + +AK 
Sbjct: 282 LRMKGVGLAIDDYGTGASSMQQLKRIPFTELKIDRAFVDGAPQDEEARAMLESSVSLAKK 341

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
           +  + +A+ +  + +   +  +G D +Q   +A P+  + +L   ++
Sbjct: 342 LGLSTVAEGVETQAEWDLIAELGVDVVQGYFIAKPMPSDELLAWARQ 388


>gi|291613054|ref|YP_003523211.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583166|gb|ADE10824.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Sideroxydans lithotrophicus ES-1]
          Length = 650

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/359 (20%), Positives = 146/359 (40%), Gaps = 27/359 (7%)

Query: 612 LSGNRFGIILISENNSLKIA---DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           + G  F   L  E++++ I         +  S+     +   ++     +G         
Sbjct: 67  MDGMEFLRHLSQEHSNIAIIITSALDGKLLASVGKMTRMHGIQL-----LGAIEKPILLT 121

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              E+L   +      K                     ++ ++   +  ++    + P +
Sbjct: 122 HLKELLSKYD---NSTKQESRPVPSM---------NFTLE-EILHGIRGNQFMPFFQPKV 168

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
            L    IVG EAL +W+HPK G ++   F+   E+   I  +   MLE+ A +  +  D+
Sbjct: 169 DLKTGRIVGAEALARWNHPKHGVVAPDAFISPLEKSGNIDDLTFMMLEKSATECRALHDK 228

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
            ++  + + +N++   L D+ L + +   + K    P  I L  +ES  M +   +   L
Sbjct: 229 GHL--LTVSVNLSLVSLNDSALADRITQSVRKLGVEPQYIVLEITESSAMTDTASALENL 286

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMA 906
            RL   G SL++DD+GT  S L  L  I F  +K + S +    +      ++ S I MA
Sbjct: 287 ARLCMNGFSLSIDDYGTGYSSLQQLTRIAFSELKIDKSFVKDFADNDALRIVVESSIDMA 346

Query: 907 KNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF--PLVKNT 963
             ++   +A+ +  + D + L+ MGCD +Q   +A P+   +    +      P+ + +
Sbjct: 347 HKLQVKSVAEGVETQQDWETLSGMGCDTVQGYFIAKPMDARAFHDFVTNYKSAPIPRKS 405


>gi|261255568|ref|ZP_05948101.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H7 str. FRIK966]
          Length = 528

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTPHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|396396|gb|AAC43155.1| ORF_o528 [Escherichia coli str. K-12 substr. MG1655]
          Length = 528

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVXPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|237653859|ref|YP_002890173.1| diguanylate phosphodiesterase [Thauera sp. MZ1T]
 gi|237625106|gb|ACR01796.1| diguanylate phosphodiesterase [Thauera sp. MZ1T]
          Length = 434

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 157/372 (42%), Gaps = 9/372 (2%)

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA-MPINLLEREITVT 655
           R+I   L+  D L  + G  + I+L S  +S  +    +   ++     + +   ++ V 
Sbjct: 60  RQIRAQLRSRDRLFAVDGKEWLIVLPSVASSAVLTLGMLRFEQTFNDGLLVVDGLDLPVR 119

Query: 656 ASIGFASWTSSKITSSEMLKNAELA-MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
              G A           +L++A +A +   +  GG+ +    +     +  +++ DL  A
Sbjct: 120 VVCGAAMSPDHGKDGFHLLQSARIAGLVAGRADGGSLLFEASMERSAPNVALLERDLRTA 179

Query: 715 VENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
                EL L   P + L   E    EAL++W +     +     + + +   +    N +
Sbjct: 180 FSGGPELELWLQPKVHLASTECRSAEALLRWRNSAGEFVPPPVVIGLIDRFGLRHRFNRW 239

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           + ++ A+ +   R +       I IN+++ DL D E+ + +   +S       R+ L  +
Sbjct: 240 LFQQAAQVLHELRMEGLEID--ISINLSATDLYDAEVPDLIGQALSTWNLEAGRLCLEIT 297

Query: 834 ESVVMGNPE--RSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
           E+ +M          +L RLR++G++L++DDFGT  S +S L  +     K + S +   
Sbjct: 298 ETSMMDERSGSSVSEVLQRLRQLGVALSIDDFGTGFSGMSRLKRLAVQEAKIDRSFVIDL 357

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             + +   I  +II ++  +   + A+ +      + L  MGCDYIQ    A  L     
Sbjct: 358 LASARDREIAAAIIDLSHRLGIEVTAEGVEDGRTAELLAGMGCDYIQGFLHAPALPLTDF 417

Query: 950 LKLLKERFPLVK 961
           +  ++ R  + +
Sbjct: 418 VAWVRARECIGR 429


>gi|153821853|ref|ZP_01974520.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|126520651|gb|EAZ77874.1| conserved hypothetical protein [Vibrio cholerae B33]
          Length = 559

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/429 (17%), Positives = 162/429 (37%), Gaps = 27/429 (6%)

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F D+L   L    T                  I            +  L   + +     
Sbjct: 4   FSDQLKQRLPKQQTTTGFVLA-----------IQPKFSSDKYYAQIRRLAASLAQ--NRQ 50

Query: 607 DILARLSGNR-FGIILISENNSLK--IADFAIAMRKSIAMPINLLEREITVTA---SIGF 660
             L    G   F   L +E N     +      +R+          +E         +G 
Sbjct: 51  VQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGV 110

Query: 661 ASWTSSKITSSEMLKNAELAM--YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENS 718
           +           ++ +A  AM  +HA      +     +      R  +++ +   + N 
Sbjct: 111 SVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEKWVQKWIANG 170

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           ++ + Y PI+      +V  EAL ++  P+  + S+ E + IAE+L +I  ++  +  + 
Sbjct: 171 DVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQLDELIGGKA 230

Query: 779 ARDIISWRDQANMPPIFILINIASK-DLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
            +D+           + + IN +   DL   ++ + +  ++++T      I +  +E+  
Sbjct: 231 LKDLPKIHALFGHH-VGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAY 289

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKR 895
             +  +   +L  LR  G+++ +DDFGT  S  SYL    FD +K +   +T      +R
Sbjct: 290 FDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRR 349

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL--L 953
            AI++ +  +A  +   ++A+ +  E ++  L  +G D +Q    A PL  ++++     
Sbjct: 350 YAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLSNLIHASDY 409

Query: 954 KERFPLVKN 962
           ++   L   
Sbjct: 410 RKHLKLTNR 418


>gi|218700863|ref|YP_002408492.1| putative diguanylate cyclase [Escherichia coli IAI39]
 gi|218370849|emb|CAR18664.1| putative diguanylate cyclase [Escherichia coli IAI39]
          Length = 729

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|300924325|ref|ZP_07140304.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|301330564|ref|ZP_07223173.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 78-1]
 gi|300419490|gb|EFK02801.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 182-1]
 gi|300843482|gb|EFK71242.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 78-1]
          Length = 528

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|229590455|ref|YP_002872574.1| putative EAL domain-containing signaling protein [Pseudomonas
           fluorescens SBW25]
 gi|229362321|emb|CAY49223.1| putative EAL domain signalling protein [Pseudomonas fluorescens
           SBW25]
          Length = 524

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 3/247 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+   E    + P++R    E  G E L++W HPK G +    F+ +AE   +I 
Sbjct: 276 HELQRALGAHEFIPYFQPVVRGDTREWAGCEVLMRWQHPKEGLVRPDLFIPLAEHSGLIV 335

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L + A  +         P   I +NI ++   D  L +  +  ++        +
Sbjct: 336 PMTRALLRQTAAQLAP-HAARFRPGFHIGVNITARHCQDLALVDDCREFLAAFPVGQVTL 394

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   + +R L   L ++G+ + +DDFGT  S L YL     D +K + S +
Sbjct: 395 VLELTERELIEPTDITRRLFDALHQLGVMIAIDDFGTGHSSLGYLRNFNVDYLKIDQSFV 454

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      IL SII ++  ++  I+A+ +      + L   G D++Q      PL  
Sbjct: 455 AMIGADALSGHILDSIIELSGKLDLGIVAEGVETAEQCEYLAAQGVDFLQGYLFGKPLPC 514

Query: 947 NSILKLL 953
           N  +K L
Sbjct: 515 NEFIKSL 521


>gi|300957525|ref|ZP_07169733.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 175-1]
 gi|300315742|gb|EFJ65526.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 175-1]
          Length = 528

 Score =  264 bits (674), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|291086665|ref|ZP_06356392.2| putative cyclic diguanylate phosphodiesterase domain protein
           [Citrobacter youngae ATCC 29220]
 gi|291067389|gb|EFE05498.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Citrobacter youngae ATCC 29220]
          Length = 520

 Score =  264 bits (674), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 121/262 (46%), Gaps = 5/262 (1%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                R + +  +  L  A++  +L L Y PII + + + VG EAL++W   K   +S +
Sbjct: 252 MWWRTRQEYLSPRRLLKRAIKKRQLCLYYQPIIDIKNGQCVGAEALLRWPGCKGEVMSPT 311

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+  MI+ I  +++E +  D+ ++      P ++I IN+++ D   + L   + 
Sbjct: 312 EFIPLAEKEGMIERITDYVVEEVFNDLGNFLSA--HPQLYISINLSASDFHSSRLIALIA 369

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +   +  +IK+  +E   + +  +   ++   R+ G  +  DDFGT  S L  L  
Sbjct: 370 EKNHEYSVAAQQIKVEVTERGFI-DVHKMTPVIQAFRQAGFEVAFDDFGTGYSNLHNLSA 428

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + S ++       +  I   II MA+++    IA+ +     I+ L   G  
Sbjct: 429 LNIDILKIDKSFISTLATNSTSHLIAEHIIEMAQSLHLKTIAEGVETAEQIEWLLERGVQ 488

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y Q  + A  L     +  ++ 
Sbjct: 489 YCQGWYFAKALPPQEFMHWIQR 510


>gi|323496757|ref|ZP_08101802.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio sinaloensis
           DSM 21326]
 gi|323318182|gb|EGA71148.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio sinaloensis
           DSM 21326]
          Length = 317

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 130/307 (42%), Gaps = 6/307 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGS 444
           + Q         +      E+ + A+ G+G  +W+ D+   ++     +   +LG     
Sbjct: 8   IAQLEEKVAQLEREKQRLEEKLNAALDGTGLCLWEQDVPTGKLRIFNMEWGKMLGYQPHE 67

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-S 503
           +   +  W   +H  D D      ++ +       Q   R+   D    W+  R R +  
Sbjct: 68  LEATVDVWKSKLHPEDYDLAVGAFEAHLNGDADTYQVVHRMMHKDGSHSWVSDRGRIIEY 127

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G  LR +G   DIT +K+  + +   A +D LTG+ NRQ+  +        S  +  
Sbjct: 128 DHQGQPLRIMGTHIDITNEKRYEQELAKLANEDPLTGLFNRQALKNHFEAY---SKQNGQ 184

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
            R  +M ID+D +K++ND LG   GD VL+ +   + +       +ARL G+ F  IL S
Sbjct: 185 QRSALMFIDLDDFKQVNDHLGHKAGDLVLIEVANWLRQYAPPSAFIARLGGDEFV-ILAS 243

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
           E    ++  FA  +    + PI L   E  +  SIG   + SS     E+   A+ AMY 
Sbjct: 244 EQPQDELNRFADHLLSQASQPILLDNGEAKIGFSIGICYFQSSLHPFEELYVAADKAMYQ 303

Query: 684 AKHRGGN 690
            K  G N
Sbjct: 304 VKQTGKN 310


>gi|110807921|ref|YP_691441.1| hypothetical protein SFV_4151 [Shigella flexneri 5 str. 8401]
 gi|110617469|gb|ABF06136.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|333012680|gb|EGK32060.1| EAL domain protein [Shigella flexneri K-227]
          Length = 528

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|215487656|ref|YP_002330087.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265728|emb|CAS10134.1| predicted diguanylate cyclase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 729

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNIGLDMGYGAAWGHFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|311696253|gb|ADP99126.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
           sensor(s) [marine bacterium HP15]
          Length = 867

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 188/454 (41%), Gaps = 44/454 (9%)

Query: 517 NDITEQKKSLEGILCNAFQ------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           +DI  +++                  ++TG PNR    + L  +            TV +
Sbjct: 426 SDIRARQEQTLRSHVEQNYKQLLKTHSVTGKPNRAMLEESLDQL-----DSHQQPYTVAM 480

Query: 571 IDIDKYKKINDVLGIAVGDDVLVS-------LTRRI---GELLKFPDILARLSGNRFGII 620
           I + ++ +I   LG    +D+L S         +RI     ++     LA +  +     
Sbjct: 481 IQLSRFNEIEQALGYRTAEDLLRSYLWELDGFLKRIMGDQLIMIDGYALASIDTSNHAFA 540

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
               +      +    +   +          ++ ++S+G A      + +S++L +A  A
Sbjct: 541 FFHSDAPDTYPEKLKTLMSWLGENFREGRFSLSWSSSVGIAHAPEHGVDASDILSSAGFA 600

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
                      V    ++ ++  + M+  D+  A+ N  ++L Y P +R+ D  I  LEA
Sbjct: 601 ALDTHQ--PLTVYDPAIADWQYQQQMLMLDIEEALGNGCIWLEYQPTVRIQDAHIASLEA 658

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           LI+W HP +G ++   ++ +AE++ MI  + L++++R+  D+ + + +     I + +NI
Sbjct: 659 LIRWQHPDFGTVAPDRWIPLAEQVGMIHHVTLWVVDRVCEDMSALKARHGDH-IAVAVNI 717

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           ++ DL   +  E ++A++      PS + L  +E+ +M +   +++++  L + G  + +
Sbjct: 718 SANDLTHPDFVEKVKAIVQHHGAQPSDLILEITETAMMADTALAKVVIRTLSQSGFRIAV 777

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETT------ 912
           DDFGT  S L  L     D +K + S ++       R  I R+ + + + ++        
Sbjct: 778 DDFGTGHSSLGTLATFELDELKIDRSFLSDILTQPARQRIFRAALDLGEALDLDVVVEGV 837

Query: 913 ---IIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
               IA           L +    Y Q  +   P
Sbjct: 838 EEEAIA---------AWLQQFPGLYGQGYYWGRP 862



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/424 (11%), Positives = 118/424 (27%), Gaps = 23/424 (5%)

Query: 5   NSLRSHFEKAFLILVLFLLWMVS-------PSFAIEPINISSSDRVLDLTSITRIYVNQG 57
              R      FL+  +    + S       P  A+  ++                 V   
Sbjct: 23  TPFRRWMPFLFLMAAMAYGLLASLLQAPENPLSALSQVDSPEPASQSSRIVQIDYLVAPL 82

Query: 58  EDFQVFTA--ADIDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGS 115
           E   +        +  +   E S     +        + N   +  E+ ++V    +   
Sbjct: 83  EQV-IEDENWRQKNWQAAPSENSGIGYYNGPVTFKVTVENPGATNAEQWVLVSAPYIDRL 141

Query: 116 HFFSPDLGSRRII-SVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFI-MEISTPNLPQI 173
                D                  +R+ +    ++ +++  G       ++ + P L  I
Sbjct: 142 RPAILDENGAFQRLRDMGDLYPFGNRLISLPPWIWPVSLPAGTTTLLFEVQNAGPTLLPI 201

Query: 174 YLWEPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYIS 233
            + EP+     +     ++  I G+     +    F M  R   L     +   V+    
Sbjct: 202 SILEPDKVVSDIAGTMTWKAFITGLLVFALLLNLSFMMKFRLPGLAWLGVLTLSVIHVQL 261

Query: 234 IDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACI 293
           +  GF   L+     E+      S      SL      ++  +R    +  +  +  + +
Sbjct: 262 VMEGFGLWLIWPDFPEINALLNISLCLCLISLCQITPNFIQVSR----LPRLLLNAASVL 317

Query: 294 AILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYE---RAVLLIPAWILIFIW 350
            +L  ++   P+    + + +   + L     I+   +K       A     + + I + 
Sbjct: 318 GLLHLLAM--PLRLPLLGQDSFLILALTGGSMILALTLKQARHEVYARYFALSLLFILLG 375

Query: 351 FIGLWMAITKRLD-NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSL 409
            +         +  N     A   G     +++   + + +L              RQ  
Sbjct: 376 TVISAARTVGWVPVNSFTDSAFFIGAAAASLILTSGIGRQILEERKKRLASDIRA-RQEQ 434

Query: 410 AVLG 413
            +  
Sbjct: 435 TLRS 438


>gi|323967819|gb|EGB63231.1| EAL domain-containing protein [Escherichia coli M863]
 gi|327252036|gb|EGE63708.1| EAL domain protein [Escherichia coli STEC_7v]
          Length = 729

 Score =  263 bits (673), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLMPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLTD 729


>gi|224825141|ref|ZP_03698247.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Lutiella nitroferrum 2002]
 gi|224602812|gb|EEG08989.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Lutiella nitroferrum 2002]
          Length = 369

 Score =  263 bits (673), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 4/252 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             +L LA+   +L   Y P I L    I G+E L +W H + G I    F+ +AE+  +I
Sbjct: 111 AHELALAISRHQLLPYYQPQIDLKSGTITGVEVLARWPHAEKGFIPPDHFIPLAEKHRLI 170

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + L +  +       WR       + + +N++ + L   +    + AL+ +     ++
Sbjct: 171 HDLTLEIAGQAFAQAAHWRRSG--VHLTVAVNLSPRLLDLPDFVSEVDALLQQYQLPAAQ 228

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +    +ES +  +   +   L RLR  G  L++DD+GT  S +  L  IPF  +K + S 
Sbjct: 229 VIWEVTESSLAADLGIALANLARLRLKGFGLSIDDYGTGFSSMQQLSRIPFTELKIDRSF 288

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +  + ++     IL+S + MA  +    +A+ I    D K L   GC+  Q   +A P+ 
Sbjct: 289 VHRAHQREHLRVILQSALDMAHKMSLVTVAEGIETLEDWKLLREFGCNLAQGYFIAKPMP 348

Query: 946 FNSILKLLKERF 957
             +    +K + 
Sbjct: 349 SETFTGWVKTQN 360


>gi|157375182|ref|YP_001473782.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
 gi|157317556|gb|ABV36654.1| diguanylate cyclase/phosphodiesterase [Shewanella sediminis
           HAW-EB3]
          Length = 632

 Score =  263 bits (673), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 171/433 (39%), Gaps = 21/433 (4%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   A+QD +TG+  R  F  +L +  +LS     L   + ++   +  ++ND  G 
Sbjct: 213 NEKLAKVAYQDPVTGLATRTVFTQKLESFSELSKEHIGL---MAIVKASELAQVNDNFGR 269

Query: 586 AVGDDVLVSLTRRIGELL--KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
             GDD L+ +   I + L         R+S   F + +        I        +S+  
Sbjct: 270 TAGDDYLLEVANCIRKSLSDFPDSECYRISTADFAVFIPGLILKDGIP-----FLESLKS 324

Query: 644 PINLLEREIT--VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF--RVSS 699
             +  ++ +     A +G   +     T   +L  A+ A+  A+  G N           
Sbjct: 325 LFDEYQQSLNTESVAHVGLVPYQHDSDTVK-LLTLADTAVSIAQTLGPNCFYMQDKFNGD 383

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                   KE +   +    L     PI     E +V  E L ++ + +   + ++  + 
Sbjct: 384 EVYGDTRWKEAIDDLIHRQALKFYQQPIHPCRTEVLVYKELLTRFYNSEGKFLPTTTVIA 443

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +AE   M+  ++  ++    + +I+    +        INI++  ++ ++    ++ L++
Sbjct: 444 MAERHGMMLDLDKLIIINTIKMLINTPAMSGAYG----INISASSIMQDDFVAWIKDLLA 499

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           K  +  +R+    +ES +  N   S   +  +  +G  ++++ FG   +   +   +  D
Sbjct: 500 KQRHIAARLVFEVNESGMQSNLSASHKFVRIMHSVGARVSVEHFGMGFTSFKFFKEVRPD 559

Query: 880 TVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +GS   G          ++ I+ +A+ +   +IA  +  + +   L RM  D +Q 
Sbjct: 560 YIKLDGSYTDGIVEDTNNKFFIKMIVDIARRLGIRVIATSVERQEEKLVLERMHVDGLQG 619

Query: 938 SHVASPLGFNSIL 950
            +++ P    +I 
Sbjct: 620 YYISQPQAAQTIE 632


>gi|110835304|ref|YP_694163.1| hypothetical protein ABO_2443 [Alcanivorax borkumensis SK2]
 gi|110648415|emb|CAL17891.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 695

 Score =  263 bits (673), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 104/586 (17%), Positives = 230/586 (39%), Gaps = 24/586 (4%)

Query: 378 IVILIGFTVIQHVLATGYFSQ---GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
           ++ L+   VI+++            +    +R SL +  S D +  + +    +    + 
Sbjct: 120 LLSLMVDRVIENLRLRKELQHSEIALHDAEKRLSLLMDQSRDAI-AYVLDGMHIHANDNY 178

Query: 435 ATILGL-ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFH 493
             + G  ++  + G     +  +  +D    + +L S         + E +    +    
Sbjct: 179 VEMFGYESADDLAGVPI--MDMVSASDHAKLKQLLRSRAQDESQTQELECKGVNTEGGEF 236

Query: 494 WMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTT 553
                    S  +G+    I I      + +  E +   + +D +TG+ +R  F+DRL  
Sbjct: 237 DATFTFSA-STYDGEACTQIVIRTTGVNESEMEERLQEMSQKDQVTGLFSRSWFMDRLDE 295

Query: 554 ILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLS 613
            + L+A ++    TV+ + +D ++     LGI   D +L S+   +   +     LA++ 
Sbjct: 296 SVALAA-NEGRLATVLYLRLDDFEHHQSELGIDGADGILKSVAEWLRAEVGE-ARLAKVD 353

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAMPI-NLLEREITVTASIGFASWTSSKITSSE 672
           G  F  IL   +++ + A+ A  +R  I   +  +  + + VTAS+G +       +S  
Sbjct: 354 GEDFA-ILQPVDDTEEAAEMAENLRAGIESLMPEVAAKTVHVTASVGVSFVREDARSSQG 412

Query: 673 MLKNAELAMYHAKHRGG-----NHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
           +L  A      A+   G       V              +   +  A+E ++  L Y P+
Sbjct: 413 ILTTALKCCNQAQRENGGKGSSVKVHDPMDDVAAGSSEAVTMQVRQALEQAKFSLRYQPL 472

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L D+     E  +     +  ++ ++EFM +A E  ++  I+ +++    R    + +
Sbjct: 473 VCLEDQSDHTFEVFVNLPQKQGDDMEATEFMPVAAEQGLVGKIDRWVVLNAMRAASVFSE 532

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
                P+ +++N+    L D  L + +   +       SR+   FSE+      +++   
Sbjct: 533 -----PVNLVLNLNGASLADATLVDWLAKAMRAAKMDGSRVTFQFSEADAATYLKQAGAF 587

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE-KRIAILRSIIPMA 906
             +++ +G  +++  FG          +IP   VKF GS     ++ +    L +II   
Sbjct: 588 AEKVKALGCGISISRFGGGLDPFKLFQHIPVTMVKFEGSFTQELSKAEGRERLTAIIQKV 647

Query: 907 KNIETTIIAKDIYGEIDIKELTRM-GCDYIQDSHVASPLGFNSILK 951
           +      +   +     ++ L  + G DY+Q  ++  P+    I +
Sbjct: 648 REGNRKTVVGFVESAAQMQALWTLGGVDYLQGYYLQPPMDVLEIPE 693


>gi|16131887|ref|NP_418485.1| predicted cyclic-di-GMP phosphodiesterase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110782|ref|AP_004562.1| predicted signal transduction protein [Escherichia coli str. K-12
           substr. W3110]
 gi|170021940|ref|YP_001726894.1| EAL domain-containing protein [Escherichia coli ATCC 8739]
 gi|194437162|ref|ZP_03069260.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli 101-1]
 gi|238903171|ref|YP_002928967.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli BW2952]
 gi|253775310|ref|YP_003038141.1| EAL domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037060|ref|ZP_04871137.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Escherichia sp. 1_1_43]
 gi|256024935|ref|ZP_05438800.1| hypothetical protein E4_16303 [Escherichia sp. 4_1_40B]
 gi|300929804|ref|ZP_07145255.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 187-1]
 gi|300946644|ref|ZP_07160902.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 116-1]
 gi|301019201|ref|ZP_07183399.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 196-1]
 gi|301645051|ref|ZP_07245014.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 146-1]
 gi|312974143|ref|ZP_07788314.1| EAL domain protein [Escherichia coli 1827-70]
 gi|2506731|sp|P32701|YJCC_ECOLI RecName: Full=Uncharacterized membrane protein YjcC
 gi|1790496|gb|AAC77031.1| predicted cyclic-di-GMP phosphodiesterase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676813|dbj|BAE78063.1| predicted signal transduction protein [Escherichia coli str. K12
           substr. W3110]
 gi|169756868|gb|ACA79567.1| EAL domain protein [Escherichia coli ATCC 8739]
 gi|194423718|gb|EDX39707.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli 101-1]
 gi|226840166|gb|EEH72168.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Escherichia sp. 1_1_43]
 gi|238863103|gb|ACR65101.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli BW2952]
 gi|242379589|emb|CAQ34410.1| predicted c-di-GMP-specific phosphodiesterase [Escherichia coli
           BL21(DE3)]
 gi|253326354|gb|ACT30956.1| EAL domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980054|gb|ACT45724.1| hypothetical protein ECD_03933 [Escherichia coli BL21(DE3)]
 gi|260451109|gb|ACX41531.1| EAL domain protein [Escherichia coli DH1]
 gi|299882358|gb|EFI90569.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 196-1]
 gi|300453691|gb|EFK17311.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 116-1]
 gi|300462266|gb|EFK25759.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 187-1]
 gi|301076673|gb|EFK91479.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 146-1]
 gi|310331677|gb|EFP98933.1| EAL domain protein [Escherichia coli 1827-70]
 gi|315138616|dbj|BAJ45775.1| putative signal transduction protein [Escherichia coli DH1]
 gi|323380551|gb|ADX52819.1| EAL domain protein [Escherichia coli KO11]
 gi|323935551|gb|EGB31882.1| AL domain-containing protein [Escherichia coli E1520]
 gi|323940245|gb|EGB36438.1| EAL domain-containing protein [Escherichia coli E482]
 gi|323960468|gb|EGB56101.1| EAL domain-containing protein [Escherichia coli H489]
 gi|323969803|gb|EGB65084.1| EAL domain-containing protein [Escherichia coli TA007]
          Length = 528

 Score =  263 bits (673), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|260596850|ref|YP_003209421.1| hypothetical protein CTU_10580 [Cronobacter turicensis z3032]
 gi|260216027|emb|CBA28722.1| Uncharacterized protein ylaB [Cronobacter turicensis z3032]
          Length = 518

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 5/262 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F +          +  L   ++N+EL + Y PIIRL D    G EALI+W  P    ++ 
Sbjct: 259 FWLLRLLRRLQSPRYRLQDGIKNNELVMHYQPIIRLADGRPTGAEALIRWPQPDGSMLTP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE+  +I  +   ++  +  D+  W          I INI++ DL D    +  
Sbjct: 319 DIFIPLAEQTGLIGPLTRRIVHNVLTDLGDWLRAHPQQ--HISINISAFDLHDPHFVDMF 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
              +++   +P ++ L  +E     +P  S  ++ RLR  G  + +DDFGT  S LSYL 
Sbjct: 377 SQALTQHGVAPHQLALEITERGF-ADPALSGPVIARLRAAGHKIYIDDFGTGYSSLSYLE 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
            +  D +K + S +     +   +   II MAK +   ++A+ +  E     L + G  Y
Sbjct: 436 DLDVDILKIDKSFVDAL--EYKTVTPHIIEMAKTLRLEMVAEGVESESQALWLRKHGVQY 493

Query: 935 IQDSHVASPLGFNSILKLLKER 956
            Q    +  L     +      
Sbjct: 494 AQGWLYSKALPAEVFIAWCNAH 515


>gi|213160883|ref|ZP_03346593.1| hypothetical protein Salmoneentericaenterica_12853 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 703

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 173/436 (39%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A+ D +  +PN ++    L               T+  + +   + +
Sbjct: 283 TRQRVVSGRARRLAYLDPVVHLPNLRALNRALKNA---------PWSTICFLHVPGLELL 333

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L+  I  +L   + + ++SG+   + L +E +  +I      +++
Sbjct: 334 GKNYGVMLRIQYKQKLSHWITPMLASNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQ 393

Query: 640 SIAMPINLLEREI--TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        S +     E+  +++L++            + 
Sbjct: 394 F---RFIWDGLPLQPPVGVSYCCVRSPVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAM 450

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      R+ +   L  A+E+   +L+  PI  +  +  V  E L++        I+  
Sbjct: 451 HLQRDLKGRIAMMNRLQQALEHDHFFLMAQPIFGVRGD--VYHEILLRLRDDNGDVINPD 508

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A E  +  AI+L+++E   R + + R+          IN++   +        ++
Sbjct: 509 NFLPVAHEFGLSSAIDLWVIENTLRFMAASREYMPAH--RFAINLSPTSVCRARFPAEVK 566

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+++    P ++    +ES  + N E+++L LG+L++ G  + +DDFGT  +  + L  
Sbjct: 567 QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKN 626

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +           I+ SI  +A+     ++A+ I  E     +  +G D
Sbjct: 627 VDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQVVAEYIESEEIRSVVLSLGID 686

Query: 934 YIQDSHVASPLGFNSI 949
           Y+Q   +  P   + I
Sbjct: 687 YLQGYLIGEPQLLSEI 702


>gi|74314554|ref|YP_312973.1| hypothetical protein SSON_4241 [Shigella sonnei Ss046]
 gi|188495504|ref|ZP_03002774.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli 53638]
 gi|193063083|ref|ZP_03044175.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli E22]
 gi|193067889|ref|ZP_03048855.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli E110019]
 gi|194426853|ref|ZP_03059406.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli B171]
 gi|256019710|ref|ZP_05433575.1| hypothetical protein ShiD9_12395 [Shigella sp. D9]
 gi|260846856|ref|YP_003224634.1| putative signal transduction protein [Escherichia coli O103:H2 str.
           12009]
 gi|300906380|ref|ZP_07124078.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 84-1]
 gi|301302750|ref|ZP_07208879.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 124-1]
 gi|332280842|ref|ZP_08393255.1| predicted signal transduction protein (EAL domain-containing
           protein) [Shigella sp. D9]
 gi|73858031|gb|AAZ90738.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|188490703|gb|EDU65806.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli 53638]
 gi|192931342|gb|EDV83944.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli E22]
 gi|192958864|gb|EDV89301.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli E110019]
 gi|194415189|gb|EDX31458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli B171]
 gi|257762003|dbj|BAI33500.1| predicted signal transduction protein [Escherichia coli O103:H2
           str. 12009]
 gi|300401828|gb|EFJ85366.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 84-1]
 gi|300841970|gb|EFK69730.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 124-1]
 gi|315254741|gb|EFU34709.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 85-1]
 gi|320200806|gb|EFW75392.1| hypothetical protein ECoL_02376 [Escherichia coli EC4100B]
 gi|323162175|gb|EFZ48039.1| EAL domain protein [Escherichia coli E128010]
 gi|323164540|gb|EFZ50341.1| EAL domain protein [Shigella sonnei 53G]
 gi|332103194|gb|EGJ06540.1| predicted signal transduction protein (EAL domain-containing
           protein) [Shigella sp. D9]
 gi|332346062|gb|AEE59396.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 528

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|312960812|ref|ZP_07775317.1| rtn protein [Pseudomonas fluorescens WH6]
 gi|311284470|gb|EFQ63046.1| rtn protein [Pseudomonas fluorescens WH6]
          Length = 514

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 7/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+   E    + P++R    E  G E L++W HPK G +    F+ +AE+  +I 
Sbjct: 265 HELQRALGAHEFIPYFQPVVRGDTREWAGCEVLMRWQHPKEGLVRPDLFIPLAEDCGLIV 324

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR- 827
            +   +L + A  +         P   I +NI ++   D  L    QA ++     P R 
Sbjct: 325 PMTRALLRQTAAQLAP-HVSRLRPGFHIGVNITARHCQDLALVADCQAFLAAF--PPGRV 381

Query: 828 -IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +E  ++   + +R L   L ++G+ + +DDFGT  S L YL +   D +K + S
Sbjct: 382 TLVLELTERELIEPTDITRRLFDALHQLGVMIAIDDFGTGHSSLGYLRHFNVDYLKIDQS 441

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +           IL SII ++  ++  I+A+ +      + L   G D++Q      PL
Sbjct: 442 FVAMIGADALSSHILDSIIELSGKLDLGIVAEGVETVQQCEYLAAKGVDFLQGYLFGRPL 501

Query: 945 GFNSILKLL 953
             +  +K L
Sbjct: 502 PADEFIKSL 510


>gi|218697770|ref|YP_002405437.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli 55989]
 gi|300823603|ref|ZP_07103731.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 119-7]
 gi|331680191|ref|ZP_08380850.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H591]
 gi|218354502|emb|CAV01362.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli 55989]
 gi|300523935|gb|EFK45004.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 119-7]
 gi|324017095|gb|EGB86314.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 117-3]
 gi|331071654|gb|EGI42990.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H591]
          Length = 528

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|65317969|ref|ZP_00390928.1| COG2200: FOG: EAL domain [Bacillus anthracis str. A2012]
          Length = 228

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 115/226 (50%), Gaps = 4/226 (1%)

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + +  ++I  +EALI+W++ + G +S ++F+ +AE    I  ++ +++  + R I  W +
Sbjct: 1   MNIETKKIASMEALIRWENKELGFVSPNQFIPLAERTGFIIKLDEWVINEVCRQIREWLN 60

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
           +     + I +NI+++      L E +   + K   S   + +  +E  ++ + + S+ +
Sbjct: 61  KGYEV-VPIAVNISARHFRSITLIEMITRALHKYNVSAHLLAIEVTEGALI-HKDISKRV 118

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPM 905
           L +L++  + + LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II +
Sbjct: 119 LLQLKEQNLKIHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIHVDERDTNITAAIIHL 178

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           A  +E  +IA+ +     I+ L      ++Q  + + PL    +  
Sbjct: 179 AHTLELDVIAEGVEKAEQIQFLKEKNVKFVQGYYYSRPLSKYDVEN 224


>gi|302670538|ref|YP_003830498.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395011|gb|ADL33916.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 642

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 183/464 (39%), Gaps = 26/464 (5%)

Query: 509 ILRYIGIANDITEQKKSLEGI-----LCNA------FQDNLTGIPNRQSFLDRLTTILDL 557
           I+  +    DI+ + +          L  A        D  T   NR +    + ++L  
Sbjct: 189 IIGVVVQFLDISIKSELFAESIALIGLMLAVENEDDRLDAETDFYNRNALKMDVESLLTK 248

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
                     ++ + I     +  + G++  D+++  +   +  LL     +     N  
Sbjct: 249 -----KNVFYIVCVKITNIDSVRRITGLSNADEIVQEVAVFLKTLL-PRYYIYHTDPNTM 302

Query: 618 GIILISEN---NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEML 674
            +++  ++   + L+    A  +         +   ++ ++A    AS      T ++++
Sbjct: 303 LLLVKEDDFINSELEALTIAEDIDCRFKSEWTVHGVQMKLSAVTIVASIPMHIHTLADLM 362

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEE 734
              +      K      + +  +    + R  ++  +   ++     + Y P        
Sbjct: 363 YMIDT--PVPKDIDRTILRNGDLKF-LTRRAEVETAITEGLKQGNFEVYYQPTYCSDGVT 419

Query: 735 IVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPI 794
           + G EALI+   PK G++   EF+ IAE+   I  I+ ++L  +   + S          
Sbjct: 420 LHGAEALIRLHDPKLGDLFPDEFIPIAEQTGYIDDIDDYVLNEVCAFLQSGEPTRLGMEC 479

Query: 795 FILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKI 854
            I +N++    + ++  E ++ ++     S S I    +ESV   + E    ++  L++ 
Sbjct: 480 -INVNLSVVQCMQDKFVERIRGIVDSYGISKSLINFEITESVSASDYELLSKVITSLKEN 538

Query: 855 GISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETT 912
           G   ++DD+GT  S +  L  + FD VK + S++    ++E    IL S I M K ++  
Sbjct: 539 GFQFSMDDYGTGYSNMHSLFSLSFDIVKIDKSILWDAENSELGEIILESCIHMIKQMKRK 598

Query: 913 IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           I+ + +  +  +++L ++G DY Q    + P+    +L     R
Sbjct: 599 ILVEGVETKKHVEKLKKLGVDYYQGYFFSKPITKTELLSYCISR 642


>gi|283787041|ref|YP_003366906.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282950495|emb|CBG90160.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 528

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 143/343 (41%), Gaps = 11/343 (3%)

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTAS----IGFASWTSSKITSSEMLKNAELAM 681
           +    A   + + +          R  T+  S    I     TS +     +++   +A+
Sbjct: 188 SEQAWAAELLPLVQRDKPVFQQGGRFYTIVHSDKRPIAVIVSTSMERFYHNLVQQLLIAL 247

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             A       +     +  +         L  A+   +L + Y PII + +E+ VG EAL
Sbjct: 248 PIAILCSLLLLLLRARARRQYCSPR--RMLQRALRQRQLSVYYQPIIDIKNEKCVGAEAL 305

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W       +S +EF+ +AE+  MI  I  +++E + RD+  +      P ++I IN++
Sbjct: 306 LRWPGGNGQVMSPAEFIPLAEKEGMIAQITDYVVEEVFRDMGDFLAA--HPQLYISINLS 363

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           + D   + L   +     +      +IK+  +E   + +  ++  ++   R+ G  + +D
Sbjct: 364 ASDFHSSRLIALIAEKAREHRVQAQQIKVEVTERGFI-DVPKTTPVIQAFRQAGYEVAID 422

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S L  L  +  D +K + S +   T    +  I   II MA+++    IA+ + 
Sbjct: 423 DFGTGYSNLHNLYSLNVDILKIDKSFIDTLTTNSTSPLIAEHIIEMAQSLRLKTIAEGVE 482

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
               +  L + G  Y Q  H A  L     +  L++   L+ +
Sbjct: 483 TADQVSWLLKRGVQYCQGWHFAKALPPQEFIHWLQQPPALLTS 525


>gi|78486468|ref|YP_392393.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
 gi|78364754|gb|ABB42719.1| diguanylate cyclase/phosphodiesterase [Thiomicrospira crunogena
           XCL-2]
          Length = 501

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 186/438 (42%), Gaps = 7/438 (1%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           +E       +   A  D+LT +PNR    D L  ++       N   +++ +D+D +K +
Sbjct: 66  SEVSSRTAELYRRANYDSLTHLPNRAHLHDILENMI-QGTAHKNSVFSLLFLDLDGFKVV 124

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           ND  G  +GD++L  ++ R+   ++  DI++RL G+ F I+L    N  ++ +    +  
Sbjct: 125 NDTQGHHIGDELLRHVSGRLISSVREGDIVSRLGGDEFVILLAETENRAEVEEVCQRIIN 184

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            ++ P     +E+  + SIG + +      +SE+++ A+ A+Y +K +G      +    
Sbjct: 185 EVSRPYWFDGQEVRTSTSIGISMFPQDSNLASELIETADEALYVSKSKGKQTFRFYNDVK 244

Query: 700 FRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 + +++     AV NSE      P I L    +VG    I+W     G  +   +
Sbjct: 245 QEVPAHKHIVQAQFDAAVLNSEFASYVEPQIDLKQNRVVGGHVSIEWQTADEGQKALESW 304

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
             +        +++L++L+     +  W          + + I           E +   
Sbjct: 305 QHLLAGNPAEASMSLWLLDSACFYLKQWLKA--DAEFVVTVPILETLWRQEGFAELLNQR 362

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +     S+++L+FS        +  R  L +L   G  LTL   G +    + L  + 
Sbjct: 363 VKQYGIPSSQLQLAFSLKSFDVFDQDLRDCLQQLSDQGYQLTLTGLGGQAFNFAMLVGLN 422

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
               KF+   +    E R     ++++I MAK+++  +IA  I  E  ++ LT  GC   
Sbjct: 423 IQEFKFDEIWLHEQLETRSGQQWIQALIQMAKSLDACMIATGITSESQVQHLTEWGCTLG 482

Query: 936 QDSHVASPLGFNSILKLL 953
           Q ++ ++P+      +L+
Sbjct: 483 QGTYWSAPIEAAEFKQLM 500


>gi|260870821|ref|YP_003237223.1| putative signal transduction protein [Escherichia coli O111:H- str.
           11128]
 gi|257767177|dbj|BAI38672.1| predicted signal transduction protein [Escherichia coli O111:H-
           str. 11128]
 gi|323175950|gb|EFZ61542.1| EAL domain protein [Escherichia coli 1180]
          Length = 528

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|324112912|gb|EGC06888.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 723

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 157/429 (36%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    +   +           ++  + +D  + ++   
Sbjct: 311 WLKRRWHLQALTDPLTNLPNLRALEQFVQHEI---------GVSICCLRLDNLEFLSRHY 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI +       + R +  LL   + + +L G+   ++L       ++      +    + 
Sbjct: 362 GIQMRVYSKRIVYRALLPLLHEQEKVFQLPGSELLLVLKGSEIKARLQHMVDVLS---SR 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     +  +  +  T   +L      AE A  +    G         S 
Sbjct: 419 KIYWSNTGLDIEYGASWGVYDGNPETLPTLLGQLSWLAEQAHVNRCVMG-ITDNHEAGSG 477

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++ V++   + +A+E  ++ L   PI     E   G + ++       G I+  +F+ 
Sbjct: 478 QITESVLLLHKVRIALERGDILLHAQPIRDARGE---GYDEILTRLKSDDGIITPDKFIP 534

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    +L ++E + R I +       P     +N+    LL  E+   +  L  
Sbjct: 535 LIAQFNLSARFDLLVVESLLRWIATHPTDKTGP--RFSVNLMPLTLLQPEIAARIVRLFK 592

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  + +  +E     N E S   +  L   G  + +DDFGT  +    L  +  +
Sbjct: 593 RYNISPETVIIEITEEQAFSNAEISMHNIELLHNSGFKIAIDDFGTGYANYERLKRLNAE 652

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +  E   + L  +G +Y+Q 
Sbjct: 653 IIKIDGVFIREIMTDSLDKMIVKSITDLAKAKSLSVVAEFVETEEQKELLFSLGVNYLQG 712

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 713 YLIGKPQPL 721


>gi|293415674|ref|ZP_06658317.1| yfeA protein [Escherichia coli B185]
 gi|291433322|gb|EFF06301.1| yfeA protein [Escherichia coli B185]
          Length = 729

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 157/428 (36%), Gaps = 22/428 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGF 946
            +  P   
Sbjct: 720 LIGRPQPL 727


>gi|56478893|ref|YP_160482.1| response regulator [Aromatoleum aromaticum EbN1]
 gi|56314936|emb|CAI09581.1| probable response regulator [Aromatoleum aromaticum EbN1]
          Length = 399

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 4/250 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +E L  A+ + EL   Y P + L    + G E L++W HP+ G I   +F+ +AEE  +I
Sbjct: 140 EERLRRAIADGELVNHYQPKVDLASGAVAGFETLVRWRHPEDGLIFPDQFIPLAEESSLI 199

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   +L         WRD     P+ + +N++  +L+  +  + ++  + +     S 
Sbjct: 200 NDLTRSVLRAALCHARKWRDDGF--PLQVAVNVSMDNLVSLDFPDFVECALDEAGIPASG 257

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES +M N      +L RLR   I L++DDFGT  S L+ L  IPF  +K +   
Sbjct: 258 LLLEVTESRLMKNRLAPLEVLARLRLKRIGLSIDDFGTGHSSLAQLRDIPFSELKVDRGF 317

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G+       AI+ + + MA+ +    +A+ +    D   L   GC+  Q   ++  L 
Sbjct: 318 VHGAWRNASLRAIVEASLRMARQLGMKTVAEGVEDREDWDFLRNSGCELAQGWFISKALP 377

Query: 946 FNSILKLLKE 955
              I   L  
Sbjct: 378 PEQIPDWLAA 387


>gi|157157528|ref|YP_001465562.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Escherichia coli E24377A]
 gi|157163530|ref|YP_001460848.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Escherichia coli HS]
 gi|218556619|ref|YP_002389533.1| putative signal transduction protein [Escherichia coli IAI1]
 gi|307312097|ref|ZP_07591734.1| EAL domain protein [Escherichia coli W]
 gi|157069210|gb|ABV08465.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli HS]
 gi|157079558|gb|ABV19266.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli E24377A]
 gi|218363388|emb|CAR01041.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli IAI1]
 gi|306907904|gb|EFN38405.1| EAL domain protein [Escherichia coli W]
 gi|315063385|gb|ADT77712.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli W]
 gi|323946195|gb|EGB42229.1| AL domain-containing protein [Escherichia coli H120]
          Length = 528

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|207857829|ref|YP_002244480.1| hypothetical protein SEN2396 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206709632|emb|CAR33982.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 729

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDSQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|323130744|gb|ADX18174.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 734

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 322 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 372

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 373 GMQMRVHCEREVFRMLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 429

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 430 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 489

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 490 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 545

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 546 LIAQFNLSIRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 603

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 604 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 663

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 664 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 723

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 724 YLIGRPRPL 732


>gi|56412693|ref|YP_149768.1| hypothetical protein SPA0450 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56126950|gb|AAV76456.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 729

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/429 (14%), Positives = 149/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L           +   +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFLLQ---------DTGQSVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|319943677|ref|ZP_08017958.1| hypothetical protein HMPREF0551_0804 [Lautropia mirabilis ATCC
           51599]
 gi|319742910|gb|EFV95316.1| hypothetical protein HMPREF0551_0804 [Lautropia mirabilis ATCC
           51599]
          Length = 778

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 172/449 (38%), Gaps = 18/449 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++  +L  +   A QD  TG+ N +  +  LT  L  +      R  ++ + I  Y  I+
Sbjct: 304 DRSLALVRMSRQARQDMSTGLLNDRGMIAELTDRLASANR---PRYGLIGLYISNYDAIH 360

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D+ G      +  +  + + +      + ARLS  R+ +++ +E  +   A       + 
Sbjct: 361 DLCGTVEAMQLEQATAQLLIQQ-NGTQLAARLSAGRYTMLIHAETVAQVRAVAREIYTQL 419

Query: 641 IAMPINLLEREITVTASIGFASW-TSSKITSSEMLK-----NAELAMYHAKHRGGNHVES 694
                      I +   IG      +S+I+S + L       A  A           +  
Sbjct: 420 SGQVFQTEHGSIRLQCHIGGLLLDPNSQISSEDCLSALSDAQAIAASVRDPQLFVEPLSQ 479

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM-DEEIVGLEALIQWDHPKWGNIS 753
             + + R+ +  I+  +  A+ N  + L   P+I      ++   E L +        I 
Sbjct: 480 TMIDARRAHQKKIEH-IRDAIRNDRIELYAQPLIDPEAPSQMRSYEVLTRLRDKDGQLIR 538

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
             EF+ +A +  M   ++  ++      + +  +   +      IN+A   + D+ + + 
Sbjct: 539 PPEFLTLASQAQMSVPLDRGVIRLAFEWLAANPEALALT-WKCSINLAGATMSDDTIADF 597

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++   +      +++    +ES  + NP  +  L+  L+  G  + LDDFGT  +   YL
Sbjct: 598 IREQRANNAIPAAKVVFEITESEAIRNPAAASRLVDDLKAQGFGIALDDFGTGLATFEYL 657

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K +GS +           I+ S   +AK ++   IA+ ++     + LT +G
Sbjct: 658 KRFPLDYLKIDGSFVRNLMTNPIDEEIILSTARVAKRLKLRTIAEHVHNAAIYERLTDLG 717

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLV 960
             Y+Q       +       + + + P  
Sbjct: 718 VSYLQGDFFGKAMPLAE---MFERQAPST 743


>gi|194469376|ref|ZP_03075360.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455740|gb|EDX44579.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
          Length = 729

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|238792344|ref|ZP_04635978.1| Predicted signal transduction protein containing sensor and EAL
           domains [Yersinia intermedia ATCC 29909]
 gi|238728270|gb|EEQ19790.1| Predicted signal transduction protein containing sensor and EAL
           domains [Yersinia intermedia ATCC 29909]
          Length = 512

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 7/270 (2%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            S     +   ++ +K+ +  A++     L Y PI+ +   +I  LEALI+W       I
Sbjct: 242 YSTFFYCYARHKLSMKKAIRRALQKGNFCLHYQPIVEIKTGQIQSLEALIRWPTTSGNAI 301

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+ +AE+  +I +I  ++L ++  D+         P + I +NI++ DL   +   
Sbjct: 302 PADVFIPVAEQTGLICSITQYVLHQVMIDLSVLHQT--HPKLMIAVNISAADLSAADFAT 359

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++   +    SP  +KL  +E  ++ + E ++  +  L + G  L LDDFGT  S LSY
Sbjct: 360 ALRTQCAAYALSPHYLKLEITERSLVDD-ENAKRNMLSLSEEGFMLVLDDFGTGYSSLSY 418

Query: 873 LGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P  T+K + S + G        +++  I+ MA+ +   +IA+ +      + L  +
Sbjct: 419 LNKLPVQTLKIDRSFILGLGMNIATGSVVPQIVSMAQQLNMQVIAEGVETAEQAQALLDL 478

Query: 931 GCDYIQDSHVASPLGFNSILKLL--KERFP 958
              Y Q       +    I K L   ++ P
Sbjct: 479 DVPYAQGWLYDKAMPLADIHKKLIINQQQP 508


>gi|323702173|ref|ZP_08113840.1| diguanylate cyclase/phosphodiesterase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532860|gb|EGB22732.1| diguanylate cyclase/phosphodiesterase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 367

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 155/365 (42%), Gaps = 14/365 (3%)

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI- 645
           +GD VL ++   + E L     +AR+  + FG+IL+    +  +A   +  +    M I 
Sbjct: 1   MGDIVLKNVADHLREALTDSFAVARIGDDEFGVILMDVGPAEALAKAQVLCKSIAEMEIN 60

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE---SFRVSSFRS 702
            L +  I +T SIG AS+  +     +++  AE+A   +K +G N  +   +   +   +
Sbjct: 61  PLGDDGIFITNSIGVASYPHNGQALDDLMLAAEVACITSKRKGRNRAQLVDTVNDNINPT 120

Query: 703 DRVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
                   L  A+ + + +   Y PI+ L   E +G E L +    +   +S+  F+  A
Sbjct: 121 VVHERILILREALSSKDSIVPFYQPIVDLETGEPMGYEVLARVKRGE-KFLSAGLFVDAA 179

Query: 762 EELCMIKAINLFMLERIARDI-ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           E+  +++ I   ++E+  ++   SW            IN + +++ + +  + +  L ++
Sbjct: 180 EKSGLMQEIGKRVIEQAMKEKNSSWAKNKL-----FFINFSMREVENRDTIQFLADLFNR 234

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P  I    +E   + + E        L  + + L +DDFG+  S   YL Y     
Sbjct: 235 YEIDPEEIVAEITERETVRDIEAVHTFAKELTDLRVRLAVDDFGSGFSSFLYLRYFDCYF 294

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
            K  GSL+     + +   I+ ++  + + +   +IA+ +      K L   G  + Q  
Sbjct: 295 AKIEGSLVRDITRSGRSRMIVENMAKLLQRLSIEVIAEFVENSEGAKVLKNAGIRFGQGY 354

Query: 939 HVASP 943
           ++  P
Sbjct: 355 YLGKP 359


>gi|157962173|ref|YP_001502207.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
 gi|157847173|gb|ABV87672.1| diguanylate cyclase/phosphodiesterase [Shewanella pealeana ATCC
           700345]
          Length = 638

 Score =  262 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 157/443 (35%), Gaps = 19/443 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           I    K+ E +   AF D +TG   R  F ++L  I      +   +  +MVI   +   
Sbjct: 206 IDGFHKTHERLSKTAFHDPITGFGTRALFTEKLDEI---GKPEHKGKGVLMVIRATELAS 262

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLK--FPDILARLSGNRFGIILISENNSLKIADFAIA 636
           IN + G   GDD L  +   I             R+S   F I++            A  
Sbjct: 263 INQMHGREAGDDYLTRIANEIKCAFNEIPQAQFYRISTADFAIVIADI-----AIKQATG 317

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           +  ++    N  ++++   A                 ++  A+ A+  A+  G N     
Sbjct: 318 IADALKTAFNEYQQQVGTPAIGHTGLVPYLQDSDPVSLMTLADTAVSIAQTLGPNSYHIQ 377

Query: 696 RVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
              +          K  +   +    +     PI           E L ++ + +   + 
Sbjct: 378 EKLTGGELFGESRWKVAINDLLRRKAIRFYIQPIRPCRHNVEFYRELLSRFYNSQGKLLP 437

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           ++  + +AE   M + ++  ++    R +I    Q+      I INI++    +      
Sbjct: 438 TATVIAMAERHGMSEELDKLIVLNTLRMLI----QSPNLDGLIGINISAASATNKSFVSW 493

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++ ++S+     +R+    SES +  N   +   +  L  +G  ++++ FG   +     
Sbjct: 494 LKNILSRQRQIAARLVFEVSESGMQANLSATYHFINELHSVGSRISIERFGLGFTSFKLF 553

Query: 874 GYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K + S              ++ II +A+ +   +IA  +  + D   + ++ 
Sbjct: 554 KEVRPDYIKLDPSYTQEITQDPHNKFFVKMIIDIARKLGIKVIATGVEKQQDKLAMEQLL 613

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
            D +Q  +++ P       K L 
Sbjct: 614 IDGLQGYYISEPSPLKKEEKSLT 636


>gi|323188144|gb|EFZ73438.1| EAL domain protein [Escherichia coli RN587/1]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNSIGLDMGYGAAWGHFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|197248874|ref|YP_002147368.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|238912830|ref|ZP_04656667.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197212577|gb|ACH49974.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|257790055|ref|YP_003180661.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Eggerthella
           lenta DSM 2243]
 gi|317489499|ref|ZP_07948009.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|257473952|gb|ACV54272.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Eggerthella
           lenta DSM 2243]
 gi|316911428|gb|EFV33027.1| EAL domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 700

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 165/450 (36%), Gaps = 26/450 (5%)

Query: 508 DILRYIGIANDITEQKKSLEGI-LCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             L  +      + ++   E       ++D LTG  +R +F                   
Sbjct: 267 KPLVSLASFISASMKRAMAERQVDELTWKDGLTGAYSRSAFHRDYD-------CGTFESI 319

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
             +++D D+   +N       GD+VL  +   + E+      + R+  + F  + +    
Sbjct: 320 GFVLVDADRLAVVNRERSRDEGDEVLRRICSSMREVFGEG--VYRIGDDEFCAVALPLEY 377

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
                     M +S+            + AS+G A W+     ++ +L  A   M   K 
Sbjct: 378 EE-----FDRMTRSLTARFAEAG----LPASVGLA-WSERCEDATVLLNTAGDRMRRVKI 427

Query: 687 RGGNHVESFRVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
                 +     +       +        AVE   L +   P +      +VG EALI++
Sbjct: 428 GRHRATDLGIDLAQDGAVNDLIRPGGARDAVEAGLLDIFLMPQVATQTGALVGAEALIRY 487

Query: 745 DHPKWGN-ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
             P+ G  +  + F+   E++  I  ++ F L R    +  W+ +     + I +N +  
Sbjct: 488 LDPERGIEVQPASFVPALEDMGEIADVDFFALTRACETVARWQRE-GRAAVPIAVNFSRM 546

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + +    + +   +++    PS I++  +ES      +  R +   LR  G S+ +DDF
Sbjct: 547 TVGEEGFVDRVAETVARFGVDPSLIEIEVTESARGRGGDLLRCVADDLRGRGFSVAVDDF 606

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGE 921
           G   + +S    + FD +K + SL+ G       +  +  +  +  ++    +A+ I  E
Sbjct: 607 GVDNANVSLFVQLEFDVLKMDRSLIWGIDATDRTMRVVSGLASLCDDLSIESVAEGIETE 666

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             ++ L   GC   Q   +  P   +   +
Sbjct: 667 QQLEALKTTGCTRAQGYLIGRPSAIDEFER 696


>gi|224824309|ref|ZP_03697417.1| diguanylate phosphodiesterase [Lutiella nitroferrum 2002]
 gi|224603728|gb|EEG09903.1| diguanylate phosphodiesterase [Lutiella nitroferrum 2002]
          Length = 218

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W HP+ G +    F+ +AE+  MI ++  ++LE   R I +        P  + +N++
Sbjct: 1   MRWQHPERGLVEPDLFIKLAEQAGMITSLTHWILEAAFRHIYTLEQAGRPSP--LAVNLS 58

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           ++DLLD  L E ++ L       P+ ++   +ES +M +P  +   L +L+ +G+ L +D
Sbjct: 59  ARDLLDPRLAERIRGLFLTWGIDPTHLQFELTESALMDDPGGALATLNQLKALGVQLAVD 118

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFGT  S LSYL  +P DT+K + S +      ++   I+RS I +  N+   ++A+ + 
Sbjct: 119 DFGTGYSSLSYLQRLPADTIKIDQSFVGAMIADQESDTIVRSTIDLGHNLGLHVVAEGVE 178

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                  L  +GCD  Q   V+ P+     
Sbjct: 179 NRDIWNRLATLGCDIAQGYFVSRPIPVEQF 208


>gi|16765736|ref|NP_461351.1| hypothetical protein STM2410 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161612843|ref|YP_001586808.1| hypothetical protein SPAB_00548 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167993108|ref|ZP_02574203.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|197262045|ref|ZP_03162119.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16420954|gb|AAL21310.1| putative diguanylate cyclase/phosphodiesterase domain 1 containing
           protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161362207|gb|ABX65975.1| hypothetical protein SPAB_00548 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197240300|gb|EDY22920.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205328816|gb|EDZ15580.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261247616|emb|CBG25443.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994517|gb|ACY89402.1| hypothetical protein STM14_2964 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158967|emb|CBW18480.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913402|dbj|BAJ37376.1| hypothetical protein STMDT12_C24330 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222885|gb|EFX47956.1| hypothetical protein SEE_04200 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|332989343|gb|AEF08326.1| hypothetical protein STMUK_2441 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRMLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSIRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|291285478|ref|YP_003502296.1| Cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O55:H7 str. CB9615]
 gi|209751184|gb|ACI73899.1| hypothetical protein ECs5043 [Escherichia coli]
 gi|290765351|gb|ADD59312.1| Cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O55:H7 str. CB9615]
 gi|320660749|gb|EFX28206.1| Cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 528

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|209399666|ref|YP_002273601.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4115]
 gi|209161066|gb|ACI38499.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4115]
          Length = 528

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|167549575|ref|ZP_02343334.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168242559|ref|ZP_02667491.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168465867|ref|ZP_02699737.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168817841|ref|ZP_02829841.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194451678|ref|YP_002046479.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200386714|ref|ZP_03213326.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|194409982|gb|ACF70201.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631442|gb|EDX50002.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|199603812|gb|EDZ02357.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|205325430|gb|EDZ13269.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205338336|gb|EDZ25100.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205344992|gb|EDZ31756.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320086904|emb|CBY96674.1| Uncharacterized protein yfeA [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|256829882|ref|YP_003158610.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579058|gb|ACU90194.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Desulfomicrobium baculatum DSM 4028]
          Length = 611

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 231/641 (36%), Gaps = 43/641 (6%)

Query: 328 YHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGL----------VL 377
               +     V        +    +G  +     + +  +                    
Sbjct: 1   MLASEHTPSMVFFTLIRSPLRPEALGALLTSPAVIIDSDVYLRPGLSSEAKRPPEATPPA 60

Query: 378 IVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI 437
             +L GF     +     F + + S  E  +  + G  D           +        +
Sbjct: 61  DSVLDGFVEYHRLAQKNVFMEEVLSQLE--TPVLAGYADG--------RILGGNEAFLNL 110

Query: 438 LGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
            G +   +    RNW   +   D    +  + + +       ++   ++ +   +    +
Sbjct: 111 CGYSRYDLVT--RNWTIDLASLDFQALQEKVFASLLATGRMQEFHTELQTSKGAYVPCNV 168

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            +    +  G  L +    N  T      +     +             F D L   L  
Sbjct: 169 SVFLHKDEKGRPLFFSAHYNPATSS-PDPKSSQPTSSH----------IFSDSLELALKR 217

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S    +    V+V+ ID  +++  +L I      L  L +R    L+  DI A L   +F
Sbjct: 218 SIRHPDYAFAVLVMGIDNAEQV--LLQIEDQQAFLELLAKRTVNCLRTLDIPACLDSEQF 275

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            I+L +  + +     A  +++  A P  L + E+ VT S G      +     ++L++A
Sbjct: 276 SILLDNVTDVIGAVRVAQRIQEETARPFRLGQSELRVTCSFGVVLAPRNYTDEKDILQDA 335

Query: 678 ELAMYHAKHRGGNHVESFRVSS--FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           + A+  A  RG   +  F           + I+  L  A+  +E+ + Y PI+ L    I
Sbjct: 336 QTALSRAVQRGERQIVIFDDRQNSQAVQFLRIESGLRSALLENEVCMHYQPIVHLGAGTI 395

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EA ++W+H + G + +  F+  AE   ++  +  + + R    +  ++        F
Sbjct: 396 SGVEAFMRWNHKRKGLLRAEWFLPFAEHSDVVFELEAWAVRRACSALRRFQQVMGET-FF 454

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N++ K+ L     E +  ++ +   SP+ I L   E  +    ER   +   + K G
Sbjct: 455 LGLNVSLKNALRLGFLEELIEVVLEHGLSPASIVLEVREEWLKYFAERFSNVFAEVNKAG 514

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIA 915
           + + +D F      L+ L   P   +K + +L     +    +L S+  +A++    ++A
Sbjct: 515 VGIVVDHFDATHISLADLHRFPLRGLKLDTAL-----QNDQGVLASLSSIARSTGLILVA 569

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
             +  +  ++ L   GC Y Q   +A  +   ++L  L+ R
Sbjct: 570 PGVEDKARLQSLQDHGCTYAQGDALAPVMDETALLDYLQRR 610


>gi|326624238|gb|EGE30583.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 734

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 322 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 372

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 373 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 429

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 430 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 489

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 490 TTERVLRL-QKIRQALERGALVLYAQPIRDSQGK---GYDEILTRLRCDDGIMMPNQFIP 545

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 546 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 603

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 604 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 663

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 664 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 723

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 724 YLIGRPRPL 732


>gi|83311265|ref|YP_421529.1| PvrR [Magnetospirillum magneticum AMB-1]
 gi|82946106|dbj|BAE50970.1| PvrR [Magnetospirillum magneticum AMB-1]
          Length = 396

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 4/244 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+++  +   +         +I+G E L +W HP+ G +    F+ +AE   MI 
Sbjct: 151 EALGNALDDGHVVPWFQAKFCAKTRKILGAEVLARWIHPEHGMVGPDRFIGLAERDGMID 210

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   M  +       WR     P   + +N++   LL+ +L + +  +       P +I
Sbjct: 211 RLTDSMFRQALAQCGEWRKAGLSP--KVALNLSPHMLLNLDLPDALVDMARDYGVPPEQI 268

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E+ + G+      +L RLR     L++DDFGT  S L  L   PF  +K + S +
Sbjct: 269 TIEITETALAGDFTSQLDILTRLRMRRFGLSIDDFGTGYSSLKQLQQGPFTELKVDQSFI 328

Query: 889 TG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 E   AI+ S I +   +   ++A+ I  E  ++ +  +GC+ +Q   +A P   
Sbjct: 329 ARAMIEEGARAIVESSIALGHRLGLKVVAEGIETEEQMRLVADLGCEEVQGFLLARPCAA 388

Query: 947 NSIL 950
            S +
Sbjct: 389 QSFV 392


>gi|300951907|ref|ZP_07165714.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 116-1]
 gi|300956149|ref|ZP_07168465.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 175-1]
 gi|300317004|gb|EFJ66788.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 175-1]
 gi|300448877|gb|EFK12497.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 116-1]
          Length = 749

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L  +   ++L       ++      +    + 
Sbjct: 388 GLMMRVHCIRSICRTLLPLMQENEKLYQLPRSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|302387228|ref|YP_003823050.1| diguanylate cyclase/phosphodiesterase [Clostridium saccharolyticum
           WM1]
 gi|302197856|gb|ADL05427.1| diguanylate cyclase/phosphodiesterase [Clostridium saccharolyticum
           WM1]
          Length = 457

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 181/416 (43%), Gaps = 13/416 (3%)

Query: 542 PNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGE 601
           P+R + L  L+  L     D   R  V+ + I+ +K++N V G    +++L  +   + E
Sbjct: 30  PDRDACLKHLSRAL-----DSGERGAVLKLHIENFKRLNQVFGYEYCENLLEQILTYLKE 84

Query: 602 LLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFA 661
           +      +    G  + +IL   +    +   A  +         +   +   +A +G  
Sbjct: 85  MTGKN--VYHYIGVEYILILDKYSQGQTLE-LAEEIAGRFDRVWKVSGTDCLCSAQMGIC 141

Query: 662 SWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSE 719
           S+     +  +MLK  +LA+  A+  G N    F  +  +  +    I   L  A+E  E
Sbjct: 142 SYPGHAGSPDQMLKCLDLAVIKAEEGGPNQAVVFDSALQKQLQRRQTIALYLRTALEKEE 201

Query: 720 LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIA 779
           + + Y P +          E  ++      G + +SEF+ +AE+   I+AI  + LE+ A
Sbjct: 202 VEVRYRPTLSTDTGIFTRAELYMRIFIKGLGLVGASEFLPVAEDSGQIRAIEYYALEKTA 261

Query: 780 RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMG 839
           + I    +  N     I + I+    L  +  + +  +I        ++ L   ES +  
Sbjct: 262 QCIAGLTEAGNTFE-SIALPISPILFLQEDFLDEVGRIIHAYHIPKGKLALEIQESALTM 320

Query: 840 NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIA 897
                 + L +L+++G+ + L++FG+  S +S +  +P DT+K     +       +   
Sbjct: 321 AYLNINVTLQQLQEMGVEIILNEFGSGHSGISSILELPMDTLKLERLFVWQLETNPRSRY 380

Query: 898 ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           ++  ++ MA+++  TIIA+ +  E  +K LT  GC+Y Q  + +  L  + +LK+L
Sbjct: 381 VIEGLVRMARDLNITIIAEGVETENQVKILTEAGCNYQQGFYYSPTLEKDILLKIL 436


>gi|15834297|ref|NP_313070.1| hypothetical protein ECs5043 [Escherichia coli O157:H7 str. Sakai]
 gi|168748091|ref|ZP_02773113.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755231|ref|ZP_02780238.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4401]
 gi|168760910|ref|ZP_02785917.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766321|ref|ZP_02791328.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4486]
 gi|168774419|ref|ZP_02799426.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4196]
 gi|168780474|ref|ZP_02805481.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4076]
 gi|168784677|ref|ZP_02809684.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC869]
 gi|168798276|ref|ZP_02823283.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC508]
 gi|195935845|ref|ZP_03081227.1| hypothetical protein EscherichcoliO157_05180 [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809445|ref|ZP_03251782.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812806|ref|ZP_03254135.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4045]
 gi|208820474|ref|ZP_03260794.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4042]
 gi|217325636|ref|ZP_03441720.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. TW14588]
 gi|254796081|ref|YP_003080918.1| putative signal transduction protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225180|ref|ZP_05939461.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H7 str. FRIK2000]
 gi|13364520|dbj|BAB38466.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769911|gb|EDU33755.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4196]
 gi|188017474|gb|EDU55596.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4113]
 gi|189001719|gb|EDU70705.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357449|gb|EDU75868.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4401]
 gi|189364252|gb|EDU82671.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368649|gb|EDU87065.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4501]
 gi|189375073|gb|EDU93489.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC869]
 gi|189379097|gb|EDU97513.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC508]
 gi|208729246|gb|EDZ78847.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734083|gb|EDZ82770.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4045]
 gi|208740597|gb|EDZ88279.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4042]
 gi|209751178|gb|ACI73896.1| hypothetical protein ECs5043 [Escherichia coli]
 gi|209751180|gb|ACI73897.1| hypothetical protein ECs5043 [Escherichia coli]
 gi|209751182|gb|ACI73898.1| hypothetical protein ECs5043 [Escherichia coli]
 gi|209751186|gb|ACI73900.1| hypothetical protein ECs5043 [Escherichia coli]
 gi|217321857|gb|EEC30281.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. TW14588]
 gi|254595481|gb|ACT74842.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H7 str. TW14359]
 gi|320190812|gb|EFW65462.1| hypothetical protein ECoD_02231 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638818|gb|EFX08464.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H7 str. G5101]
 gi|320644186|gb|EFX13251.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H- str. 493-89]
 gi|320649505|gb|EFX18029.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H- str. H 2687]
 gi|320665678|gb|EFX32715.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli O157:H7 str. LSU-61]
 gi|326341892|gb|EGD65675.1| hypothetical protein ECF_03101 [Escherichia coli O157:H7 str. 1125]
 gi|326346534|gb|EGD70268.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli O157:H7 str. 1044]
          Length = 528

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|15804653|ref|NP_290694.1| hypothetical protein Z5660 [Escherichia coli O157:H7 EDL933]
 gi|12519015|gb|AAG59259.1|AE005639_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 528

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +   + +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTXKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|168237443|ref|ZP_02662501.1| mase1 domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736553|ref|YP_002115481.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712055|gb|ACF91276.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289672|gb|EDY29035.1| mase1 domain protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|197361627|ref|YP_002141263.1| hypothetical protein SSPA0418 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197093103|emb|CAR58542.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/429 (14%), Positives = 149/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L           +   +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFLLQ---------DTGQSVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|198244115|ref|YP_002216484.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197938631|gb|ACH75964.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDSQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|325679634|ref|ZP_08159209.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
 gi|324108664|gb|EGC02905.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Ruminococcus albus 8]
          Length = 559

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I  +   A+E+  +   + PI+R +  E+  +E L +W+ P  G I+ + F+ I E+  +
Sbjct: 9   ILTNFEYALESKNIKPFFQPIVRTITGEVCAVETLARWEDPIRGLITPNVFIDILEKHDL 68

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++LFM E   R     +      P+ + +N +  D       + + +  +K    PS
Sbjct: 69  IHKLDLFMFEEACRIYSE-QLSDGKAPVSVSVNFSRIDFTHKCFVDKIISTANKYNIPPS 127

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +ESV++ N    R +  RL + G  + LDDFG+  S LS +    FD +K +  
Sbjct: 128 VLCLEITESVMLDNTYLFRKIFDRLHEEGFKIWLDDFGSGYSSLSVIKEYDFDLIKIDMR 187

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++  + +   ++  +I  AK++    +A+    +  I  L  +GC+ IQ  +   P+  
Sbjct: 188 FLSSMSIRSKKLIAGVINTAKSLGIHTLAEGAETQEHIDYLKEIGCEMIQGYYYFRPMDI 247

Query: 947 NSI 949
              
Sbjct: 248 KQF 250


>gi|322715464|gb|EFZ07035.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYVQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|194443679|ref|YP_002041675.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194402342|gb|ACF62564.1| diguanylate cyclase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 729

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|269968503|ref|ZP_06182510.1| hypothetical protein VMC_39400 [Vibrio alginolyticus 40B]
 gi|269826874|gb|EEZ81201.1| hypothetical protein VMC_39400 [Vibrio alginolyticus 40B]
          Length = 818

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 204/564 (36%), Gaps = 46/564 (8%)

Query: 405 ERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           E  +  +    D     V   D     +         +G  +  + G   +     H + 
Sbjct: 124 EELATILETIFDLPNVGVLVADEDTRILGCNRAFELQMGYQNRDLVGLKTHIFSTSHHS- 182

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F   L   +    G        + A+       + I  ++  +G IL Y+G + DI+
Sbjct: 183 -QAFYDQLWQQI-NDEGCWCGNLLSKTANGSNQAHHLCIYRLTFHSGRIL-YLGFSTDIS 239

Query: 521 E----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
                 K   E     A       +P R+ F  +L   L   + +  L   VM +   K+
Sbjct: 240 ASLLWMKNRCEQQHDWAAF-----LPTRKEFELQL-ATLANESRNKELNI-VMTLR-PKF 291

Query: 577 KK---INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----NSLK 629
            +   +   LG              I        I  +LS + F + L + +    + ++
Sbjct: 292 SERYLLEQQLG----------FADFIMRSRY-TSIAGQLSRDVFVVCLQTPHCQWLSPVR 340

Query: 630 IADFAIA-MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +   A+      +   +        V    G +          + L +A  AM  +    
Sbjct: 341 LIQIAMKGFFNELRNEMGTKMHATIVKGQTGVSILGYDTNRPRQALAHAAQAMLSSISGE 400

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           G++   +          R  ++  L   +E+  + + + PII +    +V  EAL ++  
Sbjct: 401 GSYFNFYDSELHSELVKRQHLEAFLEAQIESGLVDVYFQPIIDVQTGRVVKFEALARFYD 460

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-L 805
                  + + + I E+L +I A++  + +   +     ++      + + IN +    L
Sbjct: 461 END-AYCTQKMIAIIEDLELIAALDDVVCQAALKHFPRLQEIYGEE-VGVTINRSLNTKL 518

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++ +    LI  +   P R+ +  +E+      E     L  +RK GI + +DDFGT
Sbjct: 519 DSLQILQRSHDLIKASGVDPKRVTIELTETAYFEQDEEHTRALEEVRKEGIEIAIDDFGT 578

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S  SYL    FD +K +   +    +   +  I++ +  +A+ +   ++A+ +  + +
Sbjct: 579 GYSSFSYLEKGQFDLLKIDRKFVKNIHKGSTSYNIVKMVTELAQQMNVKVVAEGVESKQE 638

Query: 924 IKELTRMGCDYIQDSHVASPLGFN 947
           ++ L  +G DY+Q    ++ +  +
Sbjct: 639 LQVLAEIGVDYMQGFLFSAAVPVD 662


>gi|307140752|ref|ZP_07500108.1| EAL domain protein [Escherichia coli H736]
 gi|331644802|ref|ZP_08345919.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H736]
 gi|331035777|gb|EGI08015.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H736]
          Length = 528

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +      II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLFAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|322614152|gb|EFY11087.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322617453|gb|EFY14352.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624917|gb|EFY21746.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630467|gb|EFY27237.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634647|gb|EFY31380.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322639358|gb|EFY36050.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640007|gb|EFY36676.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322646213|gb|EFY42728.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322652161|gb|EFY48523.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656264|gb|EFY52560.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660341|gb|EFY56578.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665708|gb|EFY61891.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322670054|gb|EFY66195.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672834|gb|EFY68944.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678799|gb|EFY74855.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683406|gb|EFY79420.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686613|gb|EFY82593.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194500|gb|EFZ79694.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323196510|gb|EFZ81659.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203611|gb|EFZ88634.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323206569|gb|EFZ91528.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323217131|gb|EGA01853.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219795|gb|EGA04276.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224594|gb|EGA08870.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232463|gb|EGA16566.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235505|gb|EGA19589.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241335|gb|EGA25371.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323245077|gb|EGA29079.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323246228|gb|EGA30212.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323253181|gb|EGA37012.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257120|gb|EGA40827.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263423|gb|EGA46953.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264651|gb|EGA48154.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270983|gb|EGA54417.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 729

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|154174527|ref|YP_001407426.1| putative diguanylate cyclase/phosphodiesterase [Campylobacter
           curvus 525.92]
 gi|112803233|gb|EAU00577.1| putative diguanylate cyclase/phosphodiesterase [Campylobacter
           curvus 525.92]
          Length = 806

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 93/598 (15%), Positives = 188/598 (31%), Gaps = 43/598 (7%)

Query: 364 NDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDI 423
            D ++       VL   L+ F   Q   +     Q      +     + G    +   D+
Sbjct: 230 FDRLKFLQSVAFVLFFWLLAFIFYQARQSVRNLRQ-----IKLLKTTIDGGHSSIVFSDV 284

Query: 424 VRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYE 482
               +          G     + G   + L   +H     +F   +   +         E
Sbjct: 285 QNKILYVNKTFEETTGYKLKEVKGKNPHVLKSGMHPE---SFYESMREAIRTANFWESDE 341

Query: 483 FRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT-------EQKKSLEGILCNAFQ 535
              +A D    +   +  P    +  +  YI I  + T       E     E I   +  
Sbjct: 342 LISKAKDGNLIYEKAKFIPFFFRS-KLEGYIAIKLNRTKEAIMLNELAVKNEQIKAQSAI 400

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG  N  +    L                ++ + I  +K +       + D +L ++
Sbjct: 401 DKLTGFGNYFALTKNLEA---------KKDGMLICMSIKNFKTLRFFYQTRIIDAMLKAI 451

Query: 596 TRRIGELLKFPDI---LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
              +   +    I   L R   + F +    +N    I         +    +   + E 
Sbjct: 452 ADTLKLCVDTSQINAWLFRFQDDAFYLWYNGDNIVRDIGFIKEYFSFNRLEVMIDDKHES 511

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV--MIKED 710
             +  I       +    +  L  A LA   A   G          +         +   
Sbjct: 512 LPSPKIVMGVSLPNDTPQTNRLMQAILANQQALDNGSGIYYYQENDAIEMQYHKNQLTTQ 571

Query: 711 L-CLAVENSELYLVYHPIIRLMDEEIVG--LEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           L   A+EN  + +    I  +   E      E L++            EF+ IA    + 
Sbjct: 572 LVEYALENDMVIVECQGIYDVEANEKEAKFYEVLVRIMDQNGKIRYPGEFLEIAMRTQLY 631

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             I   ++      +  +      P     IN++S D+ D  + + ++  +S    +P+ 
Sbjct: 632 VQITKKVIAHAFALVEKY------PQYIFSINLSSSDIADRSVRKLLEEKLSACA-NPAH 684

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           +     ES  M + E     + R++  G  +++DDFG+  S    +  +  D +K +GS+
Sbjct: 685 VCFEMLESEEMSDYEGINSFIKRVKSYGCKISIDDFGSGYSNYYRILELDIDNIKIDGSI 744

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +      +    ++ +I+  AK     ++A+ +     + ++   G  Y Q   +  P
Sbjct: 745 IKKLPYDQNAGVLVETIVNFAKKQGYKVVAEFVSSPEILTKVQEFGIKYAQGFLLGKP 802


>gi|62180983|ref|YP_217400.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128616|gb|AAX66319.1| putative Diguanylate cyclase/phosphodiesterase domain 1;
           Diguanylate cyclase/phosphodiesterase domain 2
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 729

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYVQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|304395065|ref|ZP_07376949.1| diguanylate phosphodiesterase [Pantoea sp. aB]
 gi|304357318|gb|EFM21681.1| diguanylate phosphodiesterase [Pantoea sp. aB]
          Length = 390

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   + + E +  + PI+ L D  ++G E L +   P+      ++F+   E+  ++  +
Sbjct: 14  LLRRINSGEFHPFFQPIVSLEDLRVMGFEMLARHISPQGTVTPPADFIPAMEQNGLLDEL 73

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            L ++ +  +   +W +Q      F+ +N++   L   +L E +    ++  +  +R+K+
Sbjct: 74  MLSLIAQGFKTAAAWPEQQ-----FLSMNVSPSQLNGRDLPEMISQTANRFQFDLTRLKI 128

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ ++ +   +R  +  L  +G ++ +DDFGT  S LS+L  +P +T+K + S +  
Sbjct: 129 EITETALLDDIITARAEVEALSDMGCTIAMDDFGTGYSSLSWLIQLPVNTLKIDSSFIRS 188

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
             E      I+ S++ + ++++  +IA+ +  +   + L  +GC Y Q      P+    
Sbjct: 189 MLEKKDSRKIISSVVGLGQSLDMDVIAEGVETDEQAEMLRGIGCLYAQGYLFGKPVTAAE 248

Query: 949 ILKLLKE 955
              +L  
Sbjct: 249 SHLMLAR 255


>gi|308275029|emb|CBX31628.1| hypothetical protein N47_E51400 [uncultured Desulfobacterium sp.]
          Length = 626

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 178/430 (41%), Gaps = 19/430 (4%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +Q + +E +   A+ D +T + NR+ FL RL+ +++ S  D+ L  ++++I I+++KK N
Sbjct: 207 DQARFIELLRKEAYNDPVTFLANRRHFLSRLSFLIESS--DEFLMGSLVLIQINEFKKFN 264

Query: 581 DVLGIAVGDDVLVSLTRRIG---ELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
            + G   GD +L    R I      L    +L R++G  F ++L +   +        ++
Sbjct: 265 QLHGHEEGDRLLEKAARTIETECSKLGSNYLLGRMNGAEFALLLQNIEQAES-EKIVKSV 323

Query: 638 RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRV 697
              +    +L    I     I   +      T + +   A+ A+   +    + +E F  
Sbjct: 324 LVKLDQVNSLYNSPIVFHCGISSYT---GSETINRLFAAADAALRITQGYSVSSLECFEK 380

Query: 698 SSFRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
           +S  S        +   L  ++ ++++ L   PII  M  E++  EAL +        + 
Sbjct: 381 NSNISCNFSGANSLGNMLRDSLRDNKVKLHLEPIISCMGSELLHYEALARIRDENGQLLP 440

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
           +  F+ +AEE+  I+ ++  ++  +   + +     N       +N++S  + D+   + 
Sbjct: 441 AQIFIRLAEEMECIQDLDKLIITALLDCMKANTADTNHY----AVNLSSISMKDSAFMDW 496

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +   + K      R+    +E   +   E  +  + R+   G    LD FG       YL
Sbjct: 497 LIQTLRKFPDHSKRLIFETTEYGCISFFESVKSSISRILSTGSQFGLDHFGIGSVSFGYL 556

Query: 874 GYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +G+ +   ++       ++ I  +A  ++  II      E D   L  +G
Sbjct: 557 INLKLDYLKIDGTYIRDISKNMDNQFFIQGIGNIAHGLDIKIIGTCTEKEEDFITLKSLG 616

Query: 932 CDYIQDSHVA 941
            D  Q    +
Sbjct: 617 ADAAQGRLFS 626


>gi|221134293|ref|ZP_03560598.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Glaciecola sp. HTCC2999]
          Length = 553

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 183/417 (43%), Gaps = 10/417 (2%)

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           +++L +IL+      N   ++   ++     +       +   +   L   +        
Sbjct: 144 INQLNSILE-GLLSQNTPFSIGYFELSNALDLKRQ--HILIQPLTQLLYDYLDSHWHNDF 200

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +  LS N   ++ +  +  +  +     + ++    +   + +++V+     A      
Sbjct: 201 SIHMLSENTLVLLTVGSDEKIAFSRLVADIAQTNWQTLIENKVDVSVSFIASDALL---- 256

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPI 727
            +S  +L   + A        G           +   ++IK D+  A+  ++ YLVY P 
Sbjct: 257 ESSQFILDTLKEATVLINESIGFAPLDQEYLLSKQRELIIKSDVIHALRKNQFYLVYQPK 316

Query: 728 IRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
           + L    I   E L++W+H   G +S  EF+ IAE    I  I+ ++++   +++     
Sbjct: 317 VTLASGLIESAEVLLRWEHKSLGWLSPGEFIDIAESDGQIIEISEWVIDNGLKELSRLIA 376

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
            ++     + INI++  L++  + + + A + K    P ++++  +E+ +M N   + + 
Sbjct: 377 LSDQVQ-SLSINISASQLMNFNIVQTIAAGLKKYQIDPKKLEVEVTETSLMQNLNTTSVT 435

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPM 905
           L  L+KIG+++ +DDFG   S  +YL  +P D +K +  L+           ++ +++  
Sbjct: 436 LNELKKIGVNIAIDDFGVGYSSFAYLTKLPIDVLKLDRILLDDIASNYDTQVLIENLVKT 495

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
             N+   ++A+ I  +  +++++   CDY+Q  + + P+  N I +L  E+  L++ 
Sbjct: 496 CHNLNIKVVAEGIETKAALEKVSLTLCDYVQGFYYSEPVSINEIERLFIEQPFLLER 552


>gi|330912191|gb|EGH40701.1| hypothetical protein ECAA86_02588 [Escherichia coli AA86]
          Length = 729

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|315298221|gb|EFU57485.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 16-3]
          Length = 749

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|331648058|ref|ZP_08349148.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli M605]
 gi|331042918|gb|EGI15058.1| putative Diguanylate cyclase/phosphodiesterase domain 1 Diguanylate
           cyclase/phosphodiesterase [Escherichia coli M605]
          Length = 811

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 399 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 449

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 450 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 506

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 507 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 566

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 567 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 623

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 624 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 681

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 682 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 741

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 742 IKIDDVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 801

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 802 LIGRPQPLAD 811


>gi|320654901|gb|EFX22862.1| signal transduction protein (EAL domain containing protein)
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
          Length = 528

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|157738391|ref|YP_001491075.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157700245|gb|ABV68405.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 456

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 166/417 (39%), Gaps = 27/417 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LTG+ NR +  + +               ++ ++D+D +  IN++ G    + VLV +
Sbjct: 53  DKLTGLKNRVALDNDIKNA---------EFVSIALLDLDSFGDINELYGFVSAELVLVEV 103

Query: 596 TRRIGELLKFPDI-LARLSGNRFGIILISENNSLKIADFAIAMRKSI-AMPINLLEREIT 653
            + + E  K  ++   RLSG+ F ++        +   F   +  +     +++ +  I 
Sbjct: 104 AKILKEFEKNYNVSAYRLSGDIFCLLDKDNMPFFQFELFIEDLILTFKNKLVHIDKLGID 163

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
           V  S+        +          +        R   +             +  +E +  
Sbjct: 164 VLISMTLGISIVQEEPVRTAAIALKK-AKKTNQRFLVYNNEIDTKEVVKKSIYWREKIQK 222

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG----NISSSEFMLIAEELCMIKA 769
           A+  + +   Y PI    ++EIV  E L++             + + F+ ++ +      
Sbjct: 223 AILENNVIPFYQPIFD-RNKEIVKYETLMRIRDIDENEKVIYFTPNLFLSVSFKTKQYLQ 281

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT-LYSPSRI 828
           ++  ++ +   +++  + Q       I +NI+ KD+L+NE  E +   + +       RI
Sbjct: 282 LSHIIISKTFDNLLKTKKQ-------ISLNISFKDILNNEFIEFLDNKMDRLEKKDKQRI 334

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + + E     + + +K G+ + +DDFGT  S    +  I  D +K + SL+
Sbjct: 335 IFEILESDYISDYEHLEEFISKYKKHGVKIAIDDFGTGYSNFIRIMRIRPDYLKIDSSLI 394

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                 +    I++SII  +K +    IA+ ++ +  +  L  MG D  Q  ++  P
Sbjct: 395 KYIDIDKNSYEIVKSIIAFSKALNIKTIAEYVHTKEILDLLLEMGVDEFQGFYLGEP 451


>gi|242237750|ref|YP_002985931.1| diguanylate phosphodiesterase [Dickeya dadantii Ech703]
 gi|242129807|gb|ACS84109.1| diguanylate phosphodiesterase [Dickeya dadantii Ech703]
          Length = 249

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 9/249 (3%)

Query: 709 EDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            DL  A  + S   L Y PII L   E+ G EALI+W HP++G I    F+ +AE+  +I
Sbjct: 6   NDLAAAVHQRSGFCLHYQPIINLNSREVSGFEALIRWHHPQFGLIPPDRFIPMAEQSGLI 65

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
           + +  ++++ + R +         P   I  N++     D    + +   + +       
Sbjct: 66  RPLGEWIIQEVCRQL------LRQPGYAIATNVSPVQFSDTNFVDTLLEYLHRHQCDTRN 119

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I++  +ESV++ + E  R  +  LR  GI++ LDDFG   + + YL    FD VK + SL
Sbjct: 120 IEVEITESVLLSDIENIRNKIKTLRSAGIAVVLDDFGAGYTSVHYLYQYEFDKVKIDKSL 179

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +    E R    ++  +I     +   + A+ +     +  L  + CD IQ   V+ PL 
Sbjct: 180 IMHLGENRKNRIVVGYLIDTLHKMGIKVTAEGVETAAQMHILGELECDSIQGFFVSRPLT 239

Query: 946 FNSILKLLK 954
            + + + + 
Sbjct: 240 VDQLDRFIS 248


>gi|152965975|ref|YP_001361759.1| diguanylate phosphodiesterase [Kineococcus radiotolerans SRS30216]
 gi|151360492|gb|ABS03495.1| diguanylate phosphodiesterase [Kineococcus radiotolerans SRS30216]
          Length = 454

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 110/255 (43%), Gaps = 10/255 (3%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L   ++  EL + Y P++ L      G+EAL++W+HP+ G ++ + F+ +AE   +I 
Sbjct: 197 HALRAGIDAQELVVHYQPVVDLPTGRWEGVEALVRWEHPQRGLLAPAAFLPVAEASGLIV 256

Query: 769 AINLFMLERIARDIISWRDQANMP--------PIFILINIASKDLLDNELCEGMQALISK 820
            +   +L      +  WRD              + + +N++ + L + ++ + +   +  
Sbjct: 257 PLGRQVLTLACTQVALWRDTPPTGGGAGGGARDLHVAVNLSGRQLGEPDVVDVITDALLV 316

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +      + L  +E+ + G   +    L  +R  G+ L LDDFGT  +  +YL     D 
Sbjct: 317 SGLPAQALTLELTETSLAGTGAQVDAALAAIRARGVRLALDDFGTGYASYAYLQRFQPDV 376

Query: 881 VKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           VK +   +   G +E+   +  S+I +   +   ++A+ +      + L  +G    Q  
Sbjct: 377 VKIDRCFVAALGRSERDDLLTSSLIGLGLQLGCGVVAEGVETPEQARMLADLGVTTAQGY 436

Query: 939 HVASPLGFNSILKLL 953
             + P    ++   L
Sbjct: 437 LFSPPRTAQALGARL 451


>gi|300935164|ref|ZP_07150192.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 21-1]
 gi|300459600|gb|EFK23093.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 21-1]
          Length = 729

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGHFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|281179473|dbj|BAI55803.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 729

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGHFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|317050812|ref|YP_004111928.1| diguanylate cyclase [Desulfurispirillum indicum S5]
 gi|316945896|gb|ADU65372.1| diguanylate cyclase [Desulfurispirillum indicum S5]
          Length = 812

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/323 (23%), Positives = 144/323 (44%), Gaps = 4/323 (1%)

Query: 372 VGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT 431
            G     V  +    +  +       +    +    +     S D +   D     V+  
Sbjct: 482 QGYFENFVYRLPSGEVVAIFDDVTEEKLAEQELRLAAKVFESSMDAIVITDRNNAIVSVN 541

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
               TI G +   + G   N L      D + +  +  S +    G+ + E   R  + +
Sbjct: 542 QAFTTITGYSREEVIGHNPNLLSS-GRQDEEFYHQMWQSLLH--LGQWKGEIWNRRKNGE 598

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
            +   + I   ++++  I  YI I +DI+E+K + E I   A+ D LTG+PNR    DRL
Sbjct: 599 IYPQWVSISTATDADNAITHYIAIFSDISERKAAEERIQYLAWHDPLTGLPNRALLQDRL 658

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILAR 611
              L L+  +++ +  V+ +D+D++K IND LG  +GD +L  + +R+   ++  D ++R
Sbjct: 659 ERALVLACRNEH-QLAVLFVDLDRFKIINDTLGHHMGDLLLQEVAKRLCACVRQSDTVSR 717

Query: 612 LSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSS 671
             G+ F I+L+    +   A  A  + ++IA P  +    +  + S+G + +       +
Sbjct: 718 QGGDEFVILLLDITGADAAAMVASKIVEAIARPFTIDGHCLHTSPSVGISLYPHHGRDKA 777

Query: 672 EMLKNAELAMYHAKHRGGNHVES 694
            +LK A+ AMY AK  G N+ + 
Sbjct: 778 SLLKKADGAMYKAKDMGRNNFQF 800



 Score =  140 bits (354), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 5/162 (3%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQG----IFSDGERQSLAVLGSGDIVWDWDIVR 425
            L   L ++        +  +       +     +    ER   A+ GSGD VWDWD   
Sbjct: 104 FLTKPLDMLEFTTRVRNMLSLRRYQKALEENIKLLRQSEERWQFALEGSGDGVWDWDTQT 163

Query: 426 DRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
           D +  + ++  +LG A   +     +++  +H +D    +  +   +  +      E R+
Sbjct: 164 DAMFLSKNLKAMLGYADHELSSNYTSFMDLLHPDDLPLIQWEVQLHLQGKTPTFVVEKRM 223

Query: 486 RAADNQFHWMIIRIRPMSNS-NGDILRYIGIANDITEQKKSL 526
           R  D  + W++ R + +  + +G  LR +G  +DI+E+K   
Sbjct: 224 RCKDGSYKWVLTRGKIIEWATDGKPLRAVGTMSDISERKDME 265



 Score = 46.1 bits (108), Expect = 0.033,   Method: Composition-based stats.
 Identities = 51/445 (11%), Positives = 118/445 (26%), Gaps = 93/445 (20%)

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--VTTTPDIATIL 438
           L     +  +         +    +R    +     ++    +  D   +        + 
Sbjct: 249 LRAVGTMSDISERKDMENYLKDSSDRMRKILDAVDALIVVTQMEGDEQILFVNHHARKLY 308

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMII 497
           G     + G   +       +     + ++D         + +E      D     W + 
Sbjct: 309 G----DIEGQPWSCFNR---DTAPAQQALVDRHGNPSGEVVAWE----EYDASLGRWFLR 357

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             + +   +G ++R   +A DITE+ + +E +             N + + +    +   
Sbjct: 358 HDQGIRWVDGSVVRMQ-VATDITERHQIMETLQK-----------NEKKYRELFDNMKSG 405

Query: 558 SATDDNLRPTVMVIDIDKYKKIN------------DVLGIAVGDDV-----------LVS 594
            A  D      + +    +K +N            D++G  +   +           L  
Sbjct: 406 VAIYDVESGGDVFV----FKDVNKSAESILCARKEDLIGRNLTKALPGVEDFGLLTVLQD 461

Query: 595 LTRRIGELLKF-------------PDILARLSGNRFGIILISENNSLKIAD---FAIAMR 638
           + R                      + + RL       I                A  + 
Sbjct: 462 VYRSGSPQYFPPAHYHDDSRQGYFENFVYRLPSGEVVAIFDDVTEEKLAEQELRLAAKVF 521

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
           +S    I + +R   +  S+  A  T +  +  E++ +    +      G    E +   
Sbjct: 522 ESSMDAIVITDRNNAI-VSVNQAFTTITGYSREEVIGHNPNLL----SSGRQDEEFYHQM 576

Query: 699 SFRSDRV-MIKEDLCLAVENSELYLVYHPII--RLMDEEIVGLEAL-------------- 741
                 +   K ++    +N E+Y  +  I      D  I    A+              
Sbjct: 577 WQSLLHLGQWKGEIWNRRKNGEIYPQWVSISTATDADNAITHYIAIFSDISERKAAEERI 636

Query: 742 --IQWDHPKWGNISSSEFMLIAEEL 764
             + W  P  G  + +      E  
Sbjct: 637 QYLAWHDPLTGLPNRALLQDRLERA 661


>gi|261216969|ref|ZP_05931250.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261313562|ref|ZP_05952759.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261319199|ref|ZP_05958396.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261319839|ref|ZP_05959036.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261750082|ref|ZP_05993791.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261756505|ref|ZP_06000214.1| EAL domain-containing protein [Brucella sp. F5/99]
 gi|265986799|ref|ZP_06099356.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|260922058|gb|EEX88626.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292529|gb|EEX96025.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261298422|gb|EEY01919.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261302588|gb|EEY06085.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736489|gb|EEY24485.1| EAL domain-containing protein [Brucella sp. F5/99]
 gi|261739835|gb|EEY27761.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|264658996|gb|EEZ29257.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 563

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 226 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 285

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 286 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 343

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 344 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 402

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 403 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 462

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 463 GWLYSPPLPAQEFIEFYKAQ 482


>gi|225388998|ref|ZP_03758722.1| hypothetical protein CLOSTASPAR_02743 [Clostridium asparagiforme
           DSM 15981]
 gi|225044938|gb|EEG55184.1| hypothetical protein CLOSTASPAR_02743 [Clostridium asparagiforme
           DSM 15981]
          Length = 500

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 167/399 (41%), Gaps = 8/399 (2%)

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
           +     +  VM + ++ +K +N + G    +++L  +T  + E       + R  G  F 
Sbjct: 86  SAGPASKGVVMKLYLENFKHLNKIFGYDYCEELLSQITAYLSETADGN--VYRHIGVEFI 143

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           I+L    +  + ++    + +       +   +   +A IG  S+     T+ E+LK  +
Sbjct: 144 IVLEQF-SEGRASELGEEILERFDHVWTINGIDCLCSAQIGLCSYPGHAQTTDELLKRLD 202

Query: 679 LAMYHAKHRGGNHVESFRV--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+  A   G N +  +     +    +  I   L  A+EN E+ + Y P   L      
Sbjct: 203 LAVSSASESGPNQLAVYDSVLHTQFMRKQAIALYLQTALENHEIEVRYRPTYNLNTGRFT 262

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             +  ++      G I + EF+ IAE+   I+AI  + LE++ R I    +        I
Sbjct: 263 RADFYMRVFIQGIGLIGAGEFLPIAEDSGQIRAIGYYALEQVGRCIAELTEAGKEFD-SI 321

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            + ++    L     + +  ++        ++ L   ES +        +++  L  +G+
Sbjct: 322 CMPVSPILFLQENFLDEVSRIMETYHIPAGKLALELDESALGSAYLNINIIMQELSDMGV 381

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTII 914
            L L+ FG+  + +S +  +P  T+K     +       +  +I   +I +A+++   II
Sbjct: 382 ELVLNGFGSGYTPISSILDLPVQTLKLERMFVWQLETEPRSASIFGGLIQIARDLGLHII 441

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           A+ +  E  +  L + GC+Y Q  + A  +  + ++K++
Sbjct: 442 AEGVETENQLNALNKFGCEYQQGFYYAPTMNQDVLMKVI 480


>gi|218548158|ref|YP_002381949.1| hypothetical protein EFER_0775 [Escherichia fergusonii ATCC 35469]
 gi|218355699|emb|CAQ88311.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
          Length = 752

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 156/429 (36%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    +               ++  + +D  + ++   
Sbjct: 340 WLKRRWHLQALTDPLTNLPNLRALEQFVQHE---------TGVSICCLRLDNLEFLSRHY 390

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI +       + R +  LL   + + +L G+   ++L       ++      +    + 
Sbjct: 391 GIQMRVYSKRIVYRALLPLLHEQEKVFQLPGSELLLVLKGSEIKARLQHMVDVLS---SR 447

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     +  +  +  T   +L      AE A  +    G         S 
Sbjct: 448 KIYWSNTGLDIEYGASWGVYDGNPETLPTLLGQLSWLAEQAHVNRCVMG-ITDNHEAGSG 506

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++ V++   + +A+E  ++ L   PI     E   G + ++       G I+  +F+ 
Sbjct: 507 QITESVLLLHKVRIALERGDILLHAQPIRDARGE---GYDEILTRLKSDDGIITPDKFIP 563

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    +L ++E + R I +       P     +N+    LL  E+   +  L  
Sbjct: 564 LIAQFNLSARFDLLVVESLLRWIATHPTDKTGP--RFSVNLMPLTLLQPEIAARIVRLFK 621

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  + +  +E     N E S   +  L   G  + +DDFGT  +    L  +  +
Sbjct: 622 RYNISPETVIIEITEEQAFSNAEISMHNIELLHNSGFKIAIDDFGTGYANYERLKRLNAE 681

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +  E   + L  +G +Y+Q 
Sbjct: 682 IIKIDGVFIREIMTDSLDKMIVKSITDLAKAKSLSVVAEFVETEEQKELLFSLGVNYLQG 741

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 742 YLIGKPQPL 750


>gi|320159581|ref|YP_004172805.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1]
 gi|319993434|dbj|BAJ62205.1| hypothetical protein ANT_01710 [Anaerolinea thermophila UNI-1]
          Length = 680

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 86/299 (28%), Positives = 157/299 (52%), Gaps = 4/299 (1%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K  + +   A  D LTG PNR  F +RL   +       +LRP ++ ID+D +K +ND 
Sbjct: 353 RKDQDRLNHQARHDALTGFPNRLYFFERLQQAVQRVQHTPDLRPALIFIDLDGFKMVNDT 412

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
              A+GD VL     R+   L+  D +ARL G+ F I+L    +  +    A  + +   
Sbjct: 413 YDHAMGDRVLRIFAERLKRSLRGSDFIARLGGDEFAILLEDTVSLDEAVRVAERLIQITR 472

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            P +L  R++ ++ S G A    ++    E+L+NA++AMY AK +G + V  F     + 
Sbjct: 473 QPFDLDGRQVFLSMSAGIAQVLPNQRG-EEILRNADMAMYAAKGKGKSRVMVFDEEMHQQ 531

Query: 703 --DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
             D++ +  DL +A+E  +  L Y P++RL D  I G+EAL++W HP+ G +  S F+ +
Sbjct: 532 LRDQLELANDLRVALEEDQFTLYYQPVVRLPDGWITGVEALLRWKHPRRGVLLPSVFLPV 591

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           A+   ++  ++  ++E+    + +W +Q   P + + +N ++  L +    E ++A++ 
Sbjct: 592 AQAHGLMPLVDRLVVEKALAQLRAWNEQGL-PAVRLALNFSALSLQETSFTEWLEAMLR 649


>gi|224583052|ref|YP_002636850.1| hypothetical protein SPC_1245 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224467579|gb|ACN45409.1| hypothetical protein SPC_1245 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 678

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 149/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 266 WLNRQWHSQALTDPLTQLPNLRALEQFL---LQDAGQ------SVCYLRMENLEFLSRHY 316

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 317 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 373

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 374 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 433

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +   +F+ 
Sbjct: 434 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPYQFIP 489

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 490 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 547

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 548 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 607

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 608 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 667

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 668 YLIGRPRPL 676


>gi|86145121|ref|ZP_01063452.1| hypothetical protein MED222_04370 [Vibrio sp. MED222]
 gi|85836698|gb|EAQ54818.1| hypothetical protein MED222_04370 [Vibrio sp. MED222]
          Length = 534

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 131/264 (49%), Gaps = 7/264 (2%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              +  +  ++  L  A++N  L++   PI+     +IVG E+L++W+ P  GN+S + F
Sbjct: 255 KHKKQSQRSLEYSLSSALKNKHLHVHMQPIVNQSTNKIVGCESLLRWNDPIEGNVSPAIF 314

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE L +I+ +  F+L  +   + S ++       +I +NI+   + ++     + ++
Sbjct: 315 IPLAESLGLIEKLTYFVLHEVLTTLKSNQEVFASK--YISVNISRNVVSNSNFTNKVISI 372

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSR--LLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +      ++    +E     + +  +    L +L  +G+ + +DDFGT  + L ++  
Sbjct: 373 FKRHPEILKQVVFEVTEDGECSDADMVKIKDNLQKLSDLGVRIAIDDFGTGYAGLDFVRQ 432

Query: 876 IPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            PF  +K +   +   +++      +L S++ +++ +   +I + +  E  +K L+++G 
Sbjct: 433 FPFSILKIDRVFVKNISDESSFGIPLLESMLQLSRTLGMQVIVEGVEYESQLKILSKLGV 492

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           DYIQ  +   P+  +  + L+K++
Sbjct: 493 DYIQGFYFYKPMPISLAISLIKQQ 516


>gi|333001641|gb|EGK21209.1| EAL domain protein [Shigella flexneri VA-6]
 gi|333002294|gb|EGK21858.1| EAL domain protein [Shigella flexneri K-272]
 gi|333016117|gb|EGK35449.1| EAL domain protein [Shigella flexneri K-227]
          Length = 378

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 160/375 (42%), Gaps = 12/375 (3%)

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L+  +  LL+  + + +LSGN   + L +E++  +I      +++      + +  + 
Sbjct: 12  QKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQ-FRFFWDGMPMQP 70

Query: 653 TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
            +  S  +     + I     E+   AEL++            +  +     D+V +   
Sbjct: 71  QIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRCGAMYLQRELKDKVAMMNR 130

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E++  +L+  PI  +  +  V  E L++        I    F+ +A E  +  +I
Sbjct: 131 LQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKGENDELIGPDSFLPVAHEFGLSSSI 188

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++++E   + +   R +         IN++   +        +  L++K      ++  
Sbjct: 189 DMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIF 246

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES  + N +++++ L  L+++G  + +DDFGT  +  + L  +  D +K +GS +  
Sbjct: 247 EVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRN 306

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ SI  +A+  +  ++A+ +  E   + +  +G DY+Q   +  P     
Sbjct: 307 IVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQP--- 363

Query: 949 ILKLLKERFPLVKNT 963
           ++  L E  P+ ++ 
Sbjct: 364 LIDTLNEIEPIRESA 378


>gi|30248580|ref|NP_840650.1| hypothetical protein NE0566 [Nitrosomonas europaea ATCC 19718]
 gi|30180175|emb|CAD84477.1| Domain of unknown function 2:Response regulator receiver domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 415

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 124/247 (50%), Gaps = 4/247 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+++ +L   Y P +R+    I G+EAL++W HP  G +   +F+ +AEE  +I  +
Sbjct: 152 IRTAIDSGQLINYYQPKVRVDTGVIAGVEALVRWHHPVDGMVYPDQFIGVAEENGLIGRL 211

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              +L R       W+       + + +N++  +L   +  + +  L ++    P +I L
Sbjct: 212 THTVLSRAFIQAKVWQQSGYE--LKVAVNVSMDNLTSLDFQDAVVRLAAEAEILPGKIVL 269

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES +MG+   S  +L RLR     L++DDFGT  S L+ L  IPFD +K +   +  
Sbjct: 270 EITESQLMGDVRVSLEILTRLRLKRFHLSIDDFGTGHSSLTQLRDIPFDELKIDQGFVHR 329

Query: 891 STEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           ++      AI  + + +AK +    +A+ +    D + L + GCD  Q + ++ P+   +
Sbjct: 330 ASGDETLRAIYDASLALAKQLNMEAVAEGVEDREDWELLRQTGCDLAQGNFISRPMPAEA 389

Query: 949 ILKLLKE 955
           + + +++
Sbjct: 390 LGEWMEK 396


>gi|191168800|ref|ZP_03030576.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli B7A]
 gi|209921546|ref|YP_002295630.1| hypothetical protein ECSE_4355 [Escherichia coli SE11]
 gi|293476366|ref|ZP_06664774.1| yjcC protein [Escherichia coli B088]
 gi|300817980|ref|ZP_07098193.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 107-1]
 gi|309795869|ref|ZP_07690283.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 145-7]
 gi|190901178|gb|EDV60951.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli B7A]
 gi|209914805|dbj|BAG79879.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|291320819|gb|EFE60261.1| yjcC protein [Escherichia coli B088]
 gi|300529390|gb|EFK50452.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 107-1]
 gi|308120530|gb|EFO57792.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 145-7]
 gi|323182166|gb|EFZ67576.1| EAL domain protein [Escherichia coli 1357]
 gi|324118634|gb|EGC12526.1| EAL domain-containing protein [Escherichia coli E1167]
          Length = 528

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|149907664|ref|ZP_01896411.1| regulatory components of sensory transduction system [Moritella sp.
           PE36]
 gi|149809334|gb|EDM69263.1| regulatory components of sensory transduction system [Moritella sp.
           PE36]
          Length = 518

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 107/521 (20%), Positives = 188/521 (36%), Gaps = 21/521 (4%)

Query: 185 VNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVN 244
            N   L    +I + S +A+       + R+ +      M+ V    I I          
Sbjct: 5   DNRTLLVVTALISIGSAVALIALWRAQLRRNGVGFWAAGMSCVAAASILISGRGSIPDFL 64

Query: 245 LPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYP 304
                  ++    ++ L   + +F             +    F      A LF    Y  
Sbjct: 65  SLVVANSLYVIGFQVILR-GIRVFTGR--------PPLWLFDFGLFPLTASLFYYFNYID 115

Query: 305 MVTASIARITLASIVLYYTYFIIYHGMKGYERAV--LLIPAWILIFIWFI-GLWMAITKR 361
                   +   +  +     +     +            A I      I G    I   
Sbjct: 116 PNLNIRIMVLSIAFAMICGAIVFTLLREKNAPWRSAGFAVATIFALFGIIHGTRGIIALL 175

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER-QSLAVLGSGDIVWD 420
             ++           ++ +   F +    +     +  +     R  S AV  S   +  
Sbjct: 176 YPSEHPFMYSNMTSSVVFLGGIFIIGGIAITLILLAYAVLESELRILSQAVKQSASSIII 235

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPY--IHINDRDNFRTILDSFVGYRRGR 478
            D         P +    G     + G     L    +   D D   + L +        
Sbjct: 236 TDSSGAINYVNPALTEKTGYLPEELIGKNPRILHAGEMPAEDYDFLWSSLAA-----GNT 290

Query: 479 LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNL 538
            + EF  R  + +  W I  I P+   NG+I  ++ +  DIT  K++ E I    + D L
Sbjct: 291 WRGEFHNRKKNGELFWEIASIAPVKQRNGEISHFVAVKEDITALKEAKERIYHLVYHDTL 350

Query: 539 TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           TG+P R+ F++ L   L  +  +   R  V+ +D+D +KK+ND  G   GD +L     R
Sbjct: 351 TGLPTRKLFMEHLLKALAGARRN-TTRVAVLFVDLDGFKKVNDTFGHDAGDLLLKKTAAR 409

Query: 599 IGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASI 658
           +   ++  D +AR+ G+ F I+L +  ++  IA+ A  M +++A P NL   E+ +TASI
Sbjct: 410 LCACIRDVDTVARIGGDEFLILLTNLADNDSIAEIAERMIQAVASPYNLDSLEMNITASI 469

Query: 659 GFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           G A +     +S  ++K A+LAMY  K RG N+      + 
Sbjct: 470 GIALYPDDAESSQALVKQADLAMYEIKRRGKNNYAFADANH 510


>gi|325496584|gb|EGC94443.1| hypothetical protein ECD227_0681 [Escherichia fergusonii ECD227]
          Length = 723

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 156/429 (36%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    +               ++  + +D  + ++   
Sbjct: 311 WLKRRWHLQALTDPLTNLPNLRALEQFVQHE---------TGVSICCLRLDNLEFLSRHY 361

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           GI +       + R +  LL   + + +L G+   ++L       ++      +    + 
Sbjct: 362 GIQMRVYSKRIVYRALLPLLHEQEKVFQLPGSELLLVLKGSEIKARLQHMVDVLS---SR 418

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     +  +  +  T   +L      AE A  +    G         S 
Sbjct: 419 KIYWSNTGLDIEYGASWGVYDGNPETLPTLLGQLSWLAEQAHVNRCVMG-ITDNHEAGSG 477

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
             ++ V++   + +A+E  ++ L   PI     E   G + ++       G I+  +F+ 
Sbjct: 478 QITESVLLLHKVRIALERGDILLHAQPIRDARGE---GYDEILTRLKSDDGIITPDKFIP 534

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    +L ++E + R I +       P     +N+    LL  E+   +  L  
Sbjct: 535 LIAQFNLSARFDLLVVESLLRWIATHPTDKTGP--RFSVNLMPLTLLQPEIAARIVRLFK 592

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +   SP  + +  +E     N E S   +  L   G  + +DDFGT  +    L  +  +
Sbjct: 593 RYNISPETVIIEITEEQAFSNAEISMHNIELLHNSGFKIAIDDFGTGYANYERLKRLNAE 652

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +  E   + L  +G +Y+Q 
Sbjct: 653 IIKIDGVFIREIMTDSLDKMIVKSITDLAKAKSLSVVAEFVETEEQKELLFSLGVNYLQG 712

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 713 YLIGKPQPL 721


>gi|110644408|ref|YP_672138.1| hypothetical protein ECP_4289 [Escherichia coli 536]
 gi|300980257|ref|ZP_07174915.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 200-1]
 gi|110346000|gb|ABG72237.1| hypothetical protein YjcC (hypothetical signalling protein)
           [Escherichia coli 536]
 gi|300307824|gb|EFJ62344.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 200-1]
 gi|324014871|gb|EGB84090.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 60-1]
          Length = 528

 Score =  261 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I+  II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIVEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|239626446|ref|ZP_04669477.1| sensory box/GGDEF family protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516592|gb|EEQ56458.1| sensory box/GGDEF family protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 457

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/414 (20%), Positives = 174/414 (42%), Gaps = 12/414 (2%)

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R   L RL  +L       + +  V+ + ++ +K +N   G    +++L  +   +GE+ 
Sbjct: 32  RALCLQRLEEVLGA----PSSKGVVLKLYLENFKSLNKTFGYDYCEELLSQIKGYLGEMA 87

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASW 663
           +    + R  G  F IIL    +  + +D A  + +       +   +   +A IG  S+
Sbjct: 88  EGN--IYRYIGVEFIIILEQY-SEGQASDLADEILERFENVWKIRGVDCLCSAQIGLCSY 144

Query: 664 TSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELY 721
                   E+LK  +LA+  A   G N +  +  +          I   L  A+E  EL 
Sbjct: 145 PGHAANVDELLKRLDLAVASAAECGPNQMSVYDSNMHTQFVRRQSIAMYLQTALEKHELE 204

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           + Y P   L +      ++ ++      G + ++EF+ IAE+   I+AI  + L+   + 
Sbjct: 205 VRYRPTYCLKEGRFTRADSYMRIFIQGIGLVGAAEFLPIAEDSGQIRAIGYYALDHAGKS 264

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNP 841
           I       N     I I ++   L+  +  + ++ +I        ++ L   ++ +    
Sbjct: 265 IAELLASGNEFD-SICIPVSPILLVQEDFIDQVKRVIETYQIPEGKLALEVDDTALSSVY 323

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAIL 899
               + +  L  +G+ L +++FG+ C+ ++ +  +P +TVK     +       K  +I 
Sbjct: 324 LNVNITMQELYDMGVELVMNNFGSGCAPVTSILDLPVNTVKLERMFVWQLETNPKSASIA 383

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
             +I +AK +   IIA+ +  E  +  L    C+Y Q  + A  + F+ + K+L
Sbjct: 384 GGLIQIAKELGIHIIAEGVETENQLNALNSYECEYQQGFYYAPTMEFDVLKKVL 437


>gi|158338715|ref|YP_001519892.1| PAS sensor diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158308956|gb|ABW30573.1| PAS sensor diguanylate cyclase, putative [Acaryochloris marina
           MBIC11017]
          Length = 555

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 182/453 (40%), Gaps = 21/453 (4%)

Query: 517 NDIT------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            D+T      + K + + +   A  D +T + NR  F +   +  +     +    ++++
Sbjct: 98  RDLTLDALTRQLKIAQQELERLAEVDKVTRVFNRCRFDEVYLSEWNRLTR-EGSHLSLVL 156

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLK 629
            +ID  +   +  G  V D  L  +   I ++ +   D +AR SG  F I+L + + +  
Sbjct: 157 CEIDNLQAYQEKYGAEVCDYCLQRVAEEIVKVARRPADCVARYSGRTFMILLPNTDLAGA 216

Query: 630 ---IADFAIAMRKSIAMPINLLEREITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAK 685
                     +R     P +L      +T S+G A     +K+  S +++    A++ A+
Sbjct: 217 TYLAEAIRTGVRSVPFPPESLGVTNSPITLSLGVACQIPRAKVAPSLLIEAVHQALHFAR 276

Query: 686 HRGGNHVESFRVSS-----FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI-VGLE 739
            +G + V+             +  +     L  A++  +  L   PI  L   +     E
Sbjct: 277 EQGKDRVQIHHTGCADPDLHSNQTLHWVSRLLKALDKDQFKLYAQPIYPLSRGQKSCSYE 336

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++         S S F+ + E+   +  I+ +++  +  ++ +     +       I+
Sbjct: 337 ILLRLQDQPGIVCSPSLFLPMVEQYDFMTRIDRWVINNLLANLETMPA-LDELDARFFIH 395

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++S    + EL E +    S +     R     +E+V + +   +  L   L+ +G  + 
Sbjct: 396 LSSATCRNGELFEFLDKQFSHSNRHVQRFCFEVTENVALSHLTSTVELSRFLKSMGCQIA 455

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           LD+FG+  S    L ++P D VK +G L+    +      I+ SI  +AK +    IA+ 
Sbjct: 456 LDNFGSDMSAFMNLKHLPVDFVKIDGLLVRDIAQDQISRGIVESIHNVAKVMGMQTIAEH 515

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
           +  ++ +  +  +G DY Q  +         ++
Sbjct: 516 VESDVVLDAIANVGIDYAQGHYYDRAKPLLDVV 548


>gi|313650964|gb|EFS15364.1| EAL domain protein [Shigella flexneri 2a str. 2457T]
 gi|332754186|gb|EGJ84554.1| EAL domain protein [Shigella flexneri 4343-70]
 gi|332755549|gb|EGJ85913.1| EAL domain protein [Shigella flexneri K-671]
 gi|332756343|gb|EGJ86694.1| EAL domain protein [Shigella flexneri 2747-71]
 gi|332766313|gb|EGJ96523.1| EAL domain protein [Shigella flexneri 2930-71]
 gi|333001689|gb|EGK21255.1| EAL domain protein [Shigella flexneri K-218]
 gi|333016461|gb|EGK35792.1| EAL domain protein [Shigella flexneri K-304]
          Length = 378

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 160/375 (42%), Gaps = 12/375 (3%)

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L+  +  LL+  + + +LSGN   + L +E++  +I      +++      + +  + 
Sbjct: 12  QKLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQ-FRFFWDGMPMQP 70

Query: 653 TVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
            +  S  +     + I     E+   AEL++            +  +     D+V +   
Sbjct: 71  QIGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRCGAMYLQRELKDKVAMMNR 130

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+E++  +L+  PI  +  +  V  E L++        I    F+ +A E  +  +I
Sbjct: 131 LQQALEHNHFFLMAQPITGMRGD--VYHEILLRMKGENDELIGPGSFLPVAHEFGLSSSI 188

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +++++E   + +   R +         IN++   +        +  L++K      ++  
Sbjct: 189 DMWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIF 246

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES  + N +++++ L  L+++G  + +DDFGT  +  + L  +  D +K +GS +  
Sbjct: 247 EVTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRN 306

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ SI  +A+  +  ++A+ +  E   + +  +G DY+Q   +  P     
Sbjct: 307 IVSNSLDYQIVASICHLARMKKMRVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQP--- 363

Query: 949 ILKLLKERFPLVKNT 963
           ++  L E  P+ ++ 
Sbjct: 364 LIDTLNEIEPIRESA 378


>gi|16264943|ref|NP_437735.1| hypothetical protein SM_b20900 [Sinorhizobium meliloti 1021]
 gi|15141082|emb|CAC49595.1| Diguanylate cyclase/phosphodiesterase [Sinorhizobium meliloti 1021]
          Length = 644

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 110/516 (21%), Positives = 189/516 (36%), Gaps = 26/516 (5%)

Query: 255 ACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM--------SFYYPMV 306
               +A+++S + F       +R    VG +          +  M          + P  
Sbjct: 19  FSIAVAIAASWVAFSVGLAGTSRHAPAVGGLLLGLGIAAMHVSGMRAIEVQGRVAFDPET 78

Query: 307 TASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDI 366
           + +   +      L    F +  G++G   ++LL+ A I +  +     + +   L    
Sbjct: 79  SFAAVLLGTLIAGLALHSFQVLRGVRGLAASILLLVAAICVLHFTSMSGVVLIPDLSVAA 138

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
                   L   VI    T+I       +  + +             S + +       +
Sbjct: 139 THVFDPFWLAGGVIAASTTLILMAFGALFVDRHLTD----LKGLANASLEGMVILR-RGE 193

Query: 427 RVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVR 486
            +      AT+ G     + G  R  L       R        + +G   G  + E  + 
Sbjct: 194 VIEVNERFATLSGRKPAELVGRQRRELFAEAPERRS------SNDLGAGEGASEGE--LL 245

Query: 487 AADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQS 546
            AD  +  +    R +    G     I    D+T +K +   I   A  D LT + NR S
Sbjct: 246 HADGGYVPVERLCRTI-EYKGRPCDVI-FVRDLTARKDAERTIEHLAHHDALTDLSNRSS 303

Query: 547 FLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP 606
           F  RL   L  +   D+    V+ +D+D++K +ND+ G   GD +L  +   +       
Sbjct: 304 FDRRLRQALAAAVHHDDA-LAVLCLDLDRFKAVNDIFGHGEGDRILRKVADILRAGAGEA 362

Query: 607 DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS 666
           D +ARL G+ F I+             A  + K  +  ++     + V  SIG A     
Sbjct: 363 DTIARLGGDEFAIVQTGAAQPEAARLLADRILKLFSEEMDTRRDPMAVGVSIGVAICPGD 422

Query: 667 KITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRVMIKEDLCLAVENSELYLVY 724
             T+  +  NA+ A+Y AK  G      F          R  I+ DL  AV   +L+L Y
Sbjct: 423 GTTAERLYGNADTALYRAKQTGKGIACFFDAEMDAAVRTRRQIENDLRHAVVRRQLFLEY 482

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            P++ + D+ IVG EAL++W HP  G +  + F+ I
Sbjct: 483 QPLVDVRDDRIVGYEALLRWRHPDRGLVGPNLFIPI 518



 Score =  121 bits (303), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 842 ERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT--GSTEKRIAIL 899
           +     L RLR +G+ + +DDFGT  S LS L   PFD +K + S            AI+
Sbjct: 520 DDVLATLVRLRLLGVRIVMDDFGTGHSSLSNLQTFPFDKLKIDCSFTASLDKDPAAHAII 579

Query: 900 RSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           R+II +  ++   ++ + +  E   + +   GC  IQ      P
Sbjct: 580 RAIIALGHSLNLPVVTEGVETERQRQIIVDEGCRQIQGFLTGRP 623


>gi|209519830|ref|ZP_03268614.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
 gi|209499706|gb|EDZ99777.1| diguanylate cyclase/phosphodiesterase [Burkholderia sp. H160]
          Length = 778

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 169/452 (37%), Gaps = 33/452 (7%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +   A  D LTG+  R++F+      LD  A     R + + +DID +K +ND  G AV
Sbjct: 189 QLARLAATDPLTGLQTRRAFVTHAQERLDTLAA--GARISAIFLDIDSFKSLNDRFGHAV 246

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD  L  + + + + +     ++R+ G  F ++L  +++       A  MR  IA     
Sbjct: 247 GDHALFEVAQVLKDEVALYHGVSRIGGGEFAVLL--DDDLSHALRLAERMRVGIAAIKRP 304

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---------FRVS 698
                 ++AS G A       +   +L  A +A+  AKH G N V +             
Sbjct: 305 DGH---LSASFGVAE-HRRGESVMGLLDRAGVALLRAKHAGRNRVCAERALPFDALQPPF 360

Query: 699 SFRSDRVMIKED-----LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                   + +D          E+  L   + P+  L  ++ VG EAL++ +      + 
Sbjct: 361 DDAFALRALGDDSRAGAARYRWEDFYLISHFQPLYSLSHQKQVGFEALLRGEQDDGTLVP 420

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
                          A++          + + R       +F+  NI     + +   + 
Sbjct: 421 PVVMFAPKPSSDE-GALDRA--SHAVHLVNARRALPGDAWLFL--NILPATFIADGYADQ 475

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           +  ++      P R+ L   ES   G+ +       R R+ G  + +DDFG   S L  L
Sbjct: 476 LTKIVRAAGLEPERVILEILESHG-GSVDDMSRAAARYREHGFLIAVDDFGAGQSNLDRL 534

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             I  D VK +G L+  +T      IL  ++ +       ++ + +    ++        
Sbjct: 535 LRIRPDLVKLDGELIRATTHGTQQPILPKLVSLLHQAGMLVVVEGVETAEELILAVESNV 594

Query: 933 DYIQDSHVASP----LGFNSILKLLKERFPLV 960
           D+ Q   +  P        S+ + + + F ++
Sbjct: 595 DFAQGYLLGRPAAQIAPPESVHRQIDDAFDVI 626


>gi|167031203|ref|YP_001666434.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
 gi|166857691|gb|ABY96098.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1]
          Length = 648

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 178/436 (40%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ +  E +   ++QD+LTG+ NR+ F  +L T +  S  ++     ++++ +     +
Sbjct: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNTRV--SNLEEARAGYLLLLRVQGLAGL 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           N  LG    D +L ++  ++           D+++R  G  F ++     +   +   A 
Sbjct: 281 NARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAV-QLAQ 339

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHV 692
           A+  ++         +I   A IG A ++    +   +LK A+ A+  A+++   G   +
Sbjct: 340 ALEATLQSLHETGASDIDPVACIGLAPFSP-GDSPQALLKLADEALARAENQPTPGWVCL 398

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGN 751
           E    +     +    E L  A  N    L + P++     + ++  + + +    +   
Sbjct: 399 EQGVAAVAGDSQHAWHERLDQAFGNGHFELFFQPVVDCASAQRVLHHKVISRLQDGQGEA 458

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           + +  F+   E    +  +++ +LE++   +             + +N+++  L D +  
Sbjct: 459 LPAGRFLPWLERFGWMPRLDVLVLEKVLAHLR-------GHDQVLALNLSAATLADPKAL 511

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+ +      R+     E  +         L  RL  +G  L L  FG + S++ 
Sbjct: 512 QRVFELLGQNAALGPRLVFEIGEEQLPEQ-AALEQLTRRLHGLGFGLALQRFGGRFSMIG 570

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++    +K +GS +     +  +   + +I   A +I+  +IA+ +  E + + L  
Sbjct: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERRVLQE 630

Query: 930 MGCDYIQDSHVASPLG 945
           MG   IQ   V  P  
Sbjct: 631 MGVGGIQGQLVGEPAP 646


>gi|146312633|ref|YP_001177707.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145319509|gb|ABP61656.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 746

 Score =  261 bits (668), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 177/438 (40%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+  +      AF D +  +PN ++    LT          +    + ++ I + + +
Sbjct: 317 TRQRVIMLRASRLAFLDPVVHMPNLRALSRALTQ---------SPWSALCMLRIPELEVL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   I   L+  + + +LSG    + L +E++S +I      +++
Sbjct: 368 GRNYGVLLRIQYKQKLAAWINGTLQHNECVYQLSGYDLAVRLNTESHSARIEALDEHIKQ 427

Query: 640 SIAMPINLLEREIT--VTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
                       +   V  S        + +     E+   A+L++            + 
Sbjct: 428 F---RFIWDGMPLQPQVGVSYCCVRSPVNHLYLLLGELSIIADLSLSTNHPESLQQRGAA 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +     D+V +   L  A+E ++  L+   +  +  +     E L++  +     +S  
Sbjct: 485 HLQRNLKDKVAMMNRLQAALEGNQFVLMAQRVQAVRGD--HYHEILLRMPNENGTLLSPD 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A+E  +   ++L++LER  + + + R++         IN++   +  ++    + 
Sbjct: 543 TFLPVAQEFGLSSRVDLWVLERTLQFMATHRERLPGK--RFAINLSPSTVCRSQFPLEVN 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L+ K      ++    +ES   GN   +  ++ +L+ +G  + +DDFGT  +  + L  
Sbjct: 601 RLLKKYAIEAWQLIFEITESSGFGNAVLAGQIVKQLQMMGCRIAIDDFGTGYASYARLKS 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GS +    +      I+ SI  +A+  +  ++A+ +  E     +T +G D
Sbjct: 661 VDADILKIDGSFIRNIADNSLDYQIVASICHLARMKKMLVVAEYVESEAIHSAVTALGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P     +++
Sbjct: 721 YLQGYLMGKPEPLEGLIE 738


>gi|26248775|ref|NP_754815.1| hypothetical protein c2933 [Escherichia coli CFT073]
 gi|91211737|ref|YP_541723.1| hypothetical protein UTI89_C2726 [Escherichia coli UTI89]
 gi|110642583|ref|YP_670313.1| hypothetical protein ECP_2419 [Escherichia coli 536]
 gi|117624610|ref|YP_853523.1| outer membrane protein [Escherichia coli APEC O1]
 gi|227887444|ref|ZP_04005249.1| diguanylate cyclase [Escherichia coli 83972]
 gi|237704921|ref|ZP_04535402.1| outer membrane protein [Escherichia sp. 3_2_53FAA]
 gi|300983863|ref|ZP_07176779.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 45-1]
 gi|300997677|ref|ZP_07181827.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 200-1]
 gi|26109181|gb|AAN81383.1|AE016764_65 Hypothetical protein yfeA [Escherichia coli CFT073]
 gi|91073311|gb|ABE08192.1| hypothetical protein YfeA [Escherichia coli UTI89]
 gi|110344175|gb|ABG70412.1| hypothetical protein YfdA [Escherichia coli 536]
 gi|115513734|gb|ABJ01809.1| conserved outer membrane protein [Escherichia coli APEC O1]
 gi|226901287|gb|EEH87546.1| outer membrane protein [Escherichia sp. 3_2_53FAA]
 gi|227835794|gb|EEJ46260.1| diguanylate cyclase [Escherichia coli 83972]
 gi|300304145|gb|EFJ58665.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 200-1]
 gi|300408447|gb|EFJ91985.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 45-1]
 gi|307554441|gb|ADN47216.1| putative diguanylate cyclase [Escherichia coli ABU 83972]
 gi|315288149|gb|EFU47549.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 110-3]
 gi|315293481|gb|EFU52833.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 153-1]
 gi|324009190|gb|EGB78409.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 57-2]
 gi|324011046|gb|EGB80265.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 60-1]
          Length = 749

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLIMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|33602092|ref|NP_889652.1| hypothetical protein BB3116 [Bordetella bronchiseptica RB50]
 gi|33576530|emb|CAE33608.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 524

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 123/261 (47%), Gaps = 5/261 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  + + +   +  +E Y+VY P++ +     VG EALI+W       I+   F+  
Sbjct: 267 ARRQFSLPQLIRSGLRRNEFYMVYQPMVEVGTGRCVGAEALIRWRRRNGDLIAPDVFIDE 326

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  I   + E ++ D+  WR +     ++I IN+++ D+        +  + ++
Sbjct: 327 AERVGLIGKITERVFELVSSDVQRWRGRLGD--LYISINVSAADMASGAAERLLSEMFAR 384

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +PS++ +  +E  ++ + + +   +  +RK+G+ + +DDFGT  S L+YL     D 
Sbjct: 385 TGLTPSQVVVELTERALL-HSDEAVAAIKIIRKMGVRVAIDDFGTGYSSLAYLTSFEVDG 443

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          ++   II MAK++   ++A+ +      + L+  G DY Q  
Sbjct: 444 LKIDKRFVDAIGRDAPSSSVSVHIIEMAKSLGLRVVAEGVETAGQQRFLSEHGVDYAQGW 503

Query: 939 HVASPLGFNSILKLLKERFPL 959
               P+  N +L + +   P 
Sbjct: 504 LFGRPMPLNELLAMARRPPPG 524


>gi|320173871|gb|EFW49051.1| hypothetical protein SDB_03654 [Shigella dysenteriae CDC 74-1112]
          Length = 729

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSICRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YHISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFWIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|157377236|ref|YP_001475836.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
 gi|157319610|gb|ABV38708.1| diguanylate cyclase [Shewanella sediminis HAW-EB3]
          Length = 610

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 107/690 (15%), Positives = 222/690 (32%), Gaps = 93/690 (13%)

Query: 23  LWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVSASS- 81
           +   +   A   + I   +  +   S    +    E  +      +            + 
Sbjct: 1   MLFSTGVRAETILAIGGEEESVLELSPWLYFSPANEGEEFEQIKRLSSNQWHRLTPKYNN 60

Query: 82  -IRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDR 140
            I     W  F++ N  + +L+R++ + +  +     +    G      V         R
Sbjct: 61  HIGIDPFWVKFSVYNYEEVELDRILSLANPHIDRIELYHLVQGKIIDKVVMGDSLPFSQR 120

Query: 141 IPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLWEPNFYKDTVNSFTLYRGIIIGV 198
              ++  ++   +    + TF ++I T       + LW  + +   + + +L  G  +G 
Sbjct: 121 PLINNIFLYPFELESEKLHTFYLKIETEGSASLPLSLWSQSAFAKNIEATSLTHGFQLGA 180

Query: 199 ASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACS 257
            + + IF     + +RS            V   ++   GF  +    +      +     
Sbjct: 181 LTAIGIFSLFIAITSRSFSYSYYSGYVLSVTLLVATLHGFAFRFIWPMWPALQQLMVPLL 240

Query: 258 EIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFY-YPMVTASIARITLA 316
                   ++F    L     + ++  I   G A   +L   + +   ++   I  I++ 
Sbjct: 241 VPLTMFFALLFTEKVLQLKYHNVRMLRICRYGAAYALLLTLTTPFLDYVLALYINIISVL 300

Query: 317 SIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLV 376
            I +      +    KG++ A L   AW                 L    I   +  G +
Sbjct: 301 FITVLLMGMAVIQAFKGHKLAKLYTLAWG--------------GMLAGSFITGLMYLGFI 346

Query: 377 LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIAT 436
            + I     V+  ++    F   I +                         +    +   
Sbjct: 347 ELPIKHLTPVMLGLMFEILFMAAILA-------------------------IRYNDERKA 381

Query: 437 ILGLASGSMHG-----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
            L +   ++         R     I  +  +     L+  V  R   L+   R       
Sbjct: 382 KLRIQQEALVQAQRIRQTREEALLIEADSNEK----LEQMVQERTLELEIALR------- 430

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRL 551
                                        E  ++ + +   A  D+LTG+ NR +F  RL
Sbjct: 431 -----------------------------ELNEANQKLTEQATVDSLTGVKNRAAFDKRL 461

Query: 552 TTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILA 610
                  +        ++++DID++K IND  G   GD  L  + + + E L +  D+++
Sbjct: 462 LAE-GRLSRRQQTPMAILMLDIDRFKSINDTYGHLAGDQTLRLIAQTLKENLKRPADLVS 520

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF-ASWTSSKIT 669
           R  G  F IIL +      +    +  +    +PI+   + I +T SIG  A   +++  
Sbjct: 521 RFGGEEFAIILPNTAEEGAVLVAELIRKTVAELPIHWENKTIPLTISIGVSAEIINTENQ 580

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            + +L+ A+ A+Y AK+ G N V  +    
Sbjct: 581 PNNLLEQADKALYRAKNNGRNCVMVYTPEP 610


>gi|191171966|ref|ZP_03033511.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli F11]
 gi|190907731|gb|EDV67325.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli F11]
          Length = 531

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 268 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 327

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 328 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 385

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 386 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 444

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I+  II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 445 LKIDKSFVETLTTHKTSHLIVEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 504

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 505 FFAKAMPPQVFMQWMEQ 521


>gi|163761086|ref|ZP_02168163.1| GGDEF domain [Hoeflea phototrophica DFL-43]
 gi|162281637|gb|EDQ31931.1| GGDEF domain [Hoeflea phototrophica DFL-43]
          Length = 491

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 192/452 (42%), Gaps = 13/452 (2%)

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
             ++ ++ + + +   A  D+LTG+ NR++  + +  +L  +  D   R  +++ D+D++
Sbjct: 43  RQLSSERAAAQTLRQAANHDSLTGLRNRRALGEDVAILLADTK-DPGTRLALLLFDLDRF 101

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD VL +L  RIG          RL G+ F ++  +      I++F   
Sbjct: 102 KFINDTLGHGVGDTVLKALGLRIGVACNSAQRAYRLGGDEFLVLWENAPCDAAISEFCRG 161

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P++  +  +    SIG +         S+MLK A+LA+Y AK   G     F 
Sbjct: 162 LEATVFRPVDCADSALETAGSIGISCADQGDFVLSDMLKRADLALYRAKETPGVSHAFFS 221

Query: 697 VSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                  R+   ++ D+   + +    + Y P+      +  G  A ++W HP  G+++ 
Sbjct: 222 ADMDSDYRLRRELEADMRSGLTSGAFGIEYLPVYEAQSMQPTGFSAKLKWTHPVHGDVAP 281

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
           ++FM +AEE  ++  I  +ML        SW          I++ ++   L D      +
Sbjct: 282 TKFMPVAEESGLVVMIGKWMLAEALLAAQSWGRSGE-----IIVPVSKAQLSDPGFSCLV 336

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L+  T     R+ L      V  +   +   + RLR  G+ + + DF    + L+   
Sbjct: 337 ETLLKDTGVEAQRLVLDVRARAVPEDDLVAMATIARLRSAGVRIAVSDFSAGIAGLAMSR 396

Query: 875 YIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
             P D V+ + + +     +     +L   + +A+ + T +    + G  D++     G 
Sbjct: 397 PHPVDRVRLDLAHIKAIAGQERFAVMLGLFVQLARTVNTQVTLTGVDGPTDVESAIAAGV 456

Query: 933 DYIQDSHVASPLGFNSILKLLKERF---PLVK 961
             ++       L       + + R    P+V+
Sbjct: 457 LEVEGRFAGPSLSARKASAVFQSRKTKTPVVR 488


>gi|324112731|gb|EGC06707.1| EAL domain-containing protein [Escherichia fergusonii B253]
          Length = 782

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 161/382 (42%), Gaps = 10/382 (2%)

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +I     + +  V G+   + V+  L RRI E       +  LS + + ++         
Sbjct: 398 MIKFCGLESLEAVFGVEERNKVVKVLCRRIAEKFAQSCDIVTLSSDLYFLLC-----REN 452

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +  FA  +         L  R I +  S  +         +   ++  +LA+   ++   
Sbjct: 453 VRAFANNIALVETFEKGLGYRNIRIHNSAIYEFL--KGEAAYGYVEKLKLALSSIRNHMF 510

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +          +   + + I  ++  A++  EL+LVY PI+ +  +EI+G EAL +W   
Sbjct: 511 SEFILCDNDKLNEIEENIWISRNIRRAMKEGELFLVYQPIVDIRSQEILGAEALCRWVSE 570

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLL 806
           + GNIS  +F+ IAE++  I  +  +++E    +   +R          + IN++   L 
Sbjct: 571 ERGNISPLKFISIAEDIGFINELGNWIIETAMHEFAEFRAKAQLREDFHLHINVSPWQLN 630

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +    E + A +S +   P +I +  +E+VV    +     +   R+ G ++ +DDFGT 
Sbjct: 631 EPLFYERIMACLSSSGLQPQQICIEITETVVERINDYFYQNIAVFREQGFTIAIDDFGTG 690

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            S L     I  D++K +    +        I++ I+ +A++    ++A+ +        
Sbjct: 691 LSNLKRFYEINPDSIKIDYEFTSDIFGTAGKIIQVILDLAQDNHIPVVAEGVETPEIASA 750

Query: 927 LTRMGCDYIQDSHVASPLGFNS 948
           L  +GC   Q      PL F++
Sbjct: 751 LMDIGCVQAQGYLYQKPLPFSA 772


>gi|331670925|ref|ZP_08371759.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA271]
 gi|331061839|gb|EGI33764.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA271]
          Length = 528

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGDY--LVTHADRYVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|325496775|gb|EGC94634.1| hypothetical protein ECD227_0872 [Escherichia fergusonii ECD227]
          Length = 771

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 161/382 (42%), Gaps = 10/382 (2%)

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +I     + +  V G+   + V+  L RRI E       +  LS + + ++         
Sbjct: 387 MIKFCGLESLEAVFGVEERNKVVKVLCRRIAEKFAQSCDIVTLSSDLYFLLC-----REN 441

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +  FA  +         L  R I +  S  +         +   ++  +LA+   ++   
Sbjct: 442 VRAFANNIALVETFEKGLGYRNIRIHNSAIYEFL--KGEAAYGYVEKLKLALSSIRNHMF 499

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +          +   + + I  ++  A++  EL+LVY PI+ +  +EI+G EAL +W   
Sbjct: 500 SEFILCDNDKLNEIEENIWISRNIRRAMKEGELFLVYQPIVDIRSQEILGAEALCRWVSE 559

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLL 806
           + GNIS  +F+ IAE++  I  +  +++E    +   +R          + IN++   L 
Sbjct: 560 ERGNISPLKFISIAEDIGFINELGNWIIETAMHEFAEFRAKAQLREDFHLHINVSPWQLN 619

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +    E + A +S +   P +I +  +E+VV    +     +   R+ G ++ +DDFGT 
Sbjct: 620 EPLFYERIMACLSSSGLQPQQICIEITETVVERINDYFYQNIAVFREQGFTIAIDDFGTG 679

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            S L     I  D++K +    +        I++ I+ +A++    ++A+ +        
Sbjct: 680 LSNLKRFYEINPDSIKIDYEFTSDIFGTAGKIIQVILDLAQDNHIPVVAEGVETPEIASA 739

Query: 927 LTRMGCDYIQDSHVASPLGFNS 948
           L  +GC   Q      PL F++
Sbjct: 740 LMDIGCVQAQGYLYQKPLPFSA 761


>gi|306814512|ref|ZP_07448674.1| outer membrane protein [Escherichia coli NC101]
 gi|305851906|gb|EFM52358.1| outer membrane protein [Escherichia coli NC101]
          Length = 729

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 157/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLIMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +  +     L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|265993211|ref|ZP_06105768.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764081|gb|EEZ10113.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 563

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 226 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 285

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 286 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 343

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 344 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 402

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 403 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 462

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 463 GWLYSPPLPAQEFIEFYKAQ 482


>gi|301049150|ref|ZP_07196130.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 185-1]
 gi|300299054|gb|EFJ55439.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 185-1]
          Length = 749

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 337 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 387

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 388 GLIMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 444

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 445 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 504

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 505 TTKQVLLLNPIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 561

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 562 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 619

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 620 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 679

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 680 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 739

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 740 LIGRPQPLAD 749


>gi|191173783|ref|ZP_03035305.1| diguanylate cyclase [Escherichia coli F11]
 gi|218559348|ref|YP_002392261.1| diguanylate cyclase [Escherichia coli S88]
 gi|190905931|gb|EDV65548.1| diguanylate cyclase [Escherichia coli F11]
 gi|218366117|emb|CAR03862.1| putative diguanylate cyclase [Escherichia coli S88]
 gi|222034131|emb|CAP76872.1| Uncharacterized protein yfeA [Escherichia coli LF82]
 gi|294491491|gb|ADE90247.1| diguanylate cyclase [Escherichia coli IHE3034]
 gi|307626028|gb|ADN70332.1| outer membrane protein [Escherichia coli UM146]
 gi|312946995|gb|ADR27822.1| outer membrane protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|323949558|gb|EGB45446.1| EAL domain-containing protein [Escherichia coli H252]
 gi|323955829|gb|EGB51586.1| EAL domain-containing protein [Escherichia coli H263]
          Length = 729

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLIMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|261210163|ref|ZP_05924460.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
 gi|260840703|gb|EEX67252.1| sensory box/GGDEF family protein [Vibrio sp. RC341]
          Length = 828

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 197/547 (36%), Gaps = 47/547 (8%)

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN---WLPYIHINDRDNFRTILDSFVGY 474
           VW ++          +      L       P      W   +H+  +        +F+  
Sbjct: 304 VWVFNCALRLNFMNENHE----LEPLQAVAPTDGCYCWGELLHVQGQQQVMHHSMTFLAL 359

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R G L+        +   + + +   P+ N        + I  D   Q+   +  L  A 
Sbjct: 360 REGELRDLELAPLPN---YPVGMT-SPLFNLIRHAFHDLDIMTDNLAQQIRAQTSLLTAS 415

Query: 535 Q--DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D  TG+PNR    +RL    +           ++ I +  + +IN+  G  VGD +L
Sbjct: 416 YRRDRRTGLPNRVVLRERLQQFAEHEH--------LIAIKVTNFNQINEKYGYPVGDKLL 467

Query: 593 VSLTRRIGELLKFP----DILARLSGNRFGIILISENNSLKIA----DFAIAMRKSIAMP 644
             L+ +    L        +L  +    +  +  S+ +   I      F   +      P
Sbjct: 468 RDLSDQFQSYLDQQLAGRSVLYAIGVGEWATVFCSQVDEQIIHSHFSQFVEQLEHVNFEP 527

Query: 645 INLLEREITVTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF- 700
             L   +  ++ S+     +       T  ++L  A  A  +A +   +   + R+ S  
Sbjct: 528 WGLPNVD-YLSISLCAGLVSQRDFAEHTPDDLLLRAIEARRNAFNNNRHFCNASRLKSQE 586

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
             R DR+     +  AV   ++ +   PI       +   E L++ +  +   I    F+
Sbjct: 587 TVRQDRLNWLSRVSRAVLRDDVVVYAQPICEARSHVVASYECLVRIED-EGEIILPGHFL 645

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            I  +  +   ++  M+      +    +          IN++ +DL+     + ++A I
Sbjct: 646 PIITDTHLYTRLSRQMISHTFTMMRHRPEAF-------SINLSPQDLMSERTLQHLEAAI 698

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                 PSR+ L   ES  + +  R   +    R +G ++ +DDFG+  S +  +  +  
Sbjct: 699 KSMA-DPSRVGLEVLESEQIKDYGRMIEVCNHFRSLGATIIVDDFGSGYSNIDEIVKLEP 757

Query: 879 DTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
             +K +GSL+    +   +  I   ++ + + +    +A+ ++ +   +    MG DY+Q
Sbjct: 758 QVIKLDGSLIRNIDQDIKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQ 817

Query: 937 DSHVASP 943
              +  P
Sbjct: 818 GYFLGRP 824


>gi|266621195|ref|ZP_06114130.1| sensory box/GGDEF family protein [Clostridium hathewayi DSM 13479]
 gi|288867149|gb|EFC99447.1| sensory box/GGDEF family protein [Clostridium hathewayi DSM 13479]
          Length = 458

 Score =  261 bits (667), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/409 (20%), Positives = 177/409 (43%), Gaps = 8/409 (1%)

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARL 612
             L       + R  V+ + I+ +K++N V G    +++L  +   + E    P  +   
Sbjct: 37  RHLSEVMDTPSDRGVVLKVYIENFKRLNQVFGYDYCENLLSQILSYLKEKTGKP--VYHY 94

Query: 613 SGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSE 672
            G  + IIL  + +  + +D A  + +       +   +   +  +G  S+     T  E
Sbjct: 95  IGVEYIIIL-DQYSQGQASDLAEEIAEQFDHAWKVNGTDCLCSVQMGMCSYPGHAATPDE 153

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRL 730
           +LK  +LA+  A+  G N    F  +  +       I   L  A+E  E+ + Y P + +
Sbjct: 154 LLKCLDLAVLKAEEGGPNQAIMFDSTLQKQLLRRHTIALYLKTAIEKEEIEVRYRPTLNM 213

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
              +    E  ++      G I +SE + IAE+   I+++  F L+++ + I    +   
Sbjct: 214 ETGKFSRAEFYMRIFIKGLGLIGASEVLPIAEDSGQIRSLEYFALDKVGQCIAKLTEAGK 273

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
                I + I+S   L  +  + ++ +I        ++ +   ES +        ++L  
Sbjct: 274 EFD-SIALPISSILFLQEDFLDEVRRVIDTYQIPKGKLAIEIQESALTTAYLNINVMLQE 332

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L  +G+ L L++FG+  S ++ +  +P +T+K     +       +   ++  +I +A++
Sbjct: 333 LSDMGVELVLNEFGSGYSGVATILELPVNTLKLERLFVWQLETNPRSHCVIEGLIHIARD 392

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           +   IIA+ +  E  +  LT+ GCDY Q  + +  L  +++LK++   F
Sbjct: 393 LNLNIIAEGVETENQVNILTKAGCDYQQGFYYSPTLEQDTLLKVIDNTF 441


>gi|225848273|ref|YP_002728436.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643144|gb|ACN98194.1| signal transduction response regulator [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 418

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 174/432 (40%), Gaps = 26/432 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           ++K   E      + D  TG  NR   +D +             R   ++ID+D    + 
Sbjct: 9   KRKNEEEK-----YIDKTTGAYNRDY-IDIIEKDFL------KKRYAFLLIDVDNLSNLL 56

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           ++ G    + +L  L   I   ++  D + R+  + F I+L  + N       A  +   
Sbjct: 57  NIYGKEFLELILRDLVSLIKRNIRENDKIIRVGHDEFLILLEKDGNDTNYLGIAEKIVSK 116

Query: 641 IA-MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +A  P  +++ ++ +T S G       + +  +  K A+ A+  AK +G N VE +   S
Sbjct: 117 VAINPFFIIKDKVKITVSAGLYINADKEKSFEDAFKKADKALLLAKEKGKNRVELYSDRS 176

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                  +  D+  A+  + +   Y PI  +   +    E+L++    +   I    F+ 
Sbjct: 177 INLIDRRL-SDIKEAILENRVICFYQPIFNVQTFKTFKYESLVRILTKERKIILPGMFLN 235

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
             +   + K +   MLE     +           I I +N+   D+LD ++ + + +L  
Sbjct: 236 SIKGSHVYKELTRKMLEFNFSILNR-------KNINISVNLLPSDILDEDILKILLSLGK 288

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
                  ++ +   ES  +    + R  +  L+  G  + LDDFG+  S + ++  + FD
Sbjct: 289 NL---REKVTIELLESESVSEYSKLRDKINTLKDAGYKIALDDFGSGYSNILHIVELSFD 345

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G ++    +     + +++I  + K +    +A+ I  +    ++  +G DY Q 
Sbjct: 346 YIKIDGQIIRKIDKDSISYSAVKAIRGLTKELNIPTVAEFISSQEIFDKVKELGIDYGQG 405

Query: 938 SHVASPLGFNSI 949
                P+  + I
Sbjct: 406 YFFKEPINLSEI 417


>gi|91226935|ref|ZP_01261532.1| hypothetical protein V12G01_16162 [Vibrio alginolyticus 12G01]
 gi|91188898|gb|EAS75183.1| hypothetical protein V12G01_16162 [Vibrio alginolyticus 12G01]
          Length = 818

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/564 (17%), Positives = 204/564 (36%), Gaps = 46/564 (8%)

Query: 405 ERQSLAVLGSGD----IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND 460
           E  +  +    D     V   D     +         +G  +  + G   +     H + 
Sbjct: 124 EELATILETIFDLPNVGVLVADEDTRILGCNRAFELQMGYQNRDLVGLKTHIFSTSHHS- 182

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDIT 520
              F   L   +    G        + A+       + I  ++  +G IL Y+G + DI+
Sbjct: 183 -QAFYDQLWQQI-NDEGCWCGNLLSKTANGSNQAHHLCIYRLTFHSGRIL-YLGFSTDIS 239

Query: 521 E----QKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
                 K   E     A       +P R+ F  +L   L   + +  L   VM +   K+
Sbjct: 240 ASLLWMKNRCEQQHDWAAF-----LPTRKEFELQL-ATLANESRNKELNI-VMTLR-PKF 291

Query: 577 KK---INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN----NSLK 629
            +   +   LG              I        I  +LS + F + L + +    + ++
Sbjct: 292 SERYLLEQQLG----------FADFIMRSRY-TSIAGQLSRDVFVVCLQTPHCQWLSPVR 340

Query: 630 IADFAIA-MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           +   A+      +   +        V    G +          + L +A  AM  +    
Sbjct: 341 LIQIAMKGFFNELRNEMGTKMHATIVKGQTGVSILGYDTNRPRQALAHAAQAMLSSISCE 400

Query: 689 GNHVESFRVSSFRS--DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH 746
           G++   +          R  ++  L   +E+  + + + PII +    +V  EAL ++  
Sbjct: 401 GSYFNFYDSELHSELVKRQHLEAFLEAQIESGLVDVYFQPIIDVQTGSVVKFEALARFYD 460

Query: 747 PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-L 805
                  + + + I E+L +I A++  + +   +     ++      + + IN +    L
Sbjct: 461 END-AYCTQKMIAIIEDLELIAALDDVVCQAALKHFPRLQEIYGEE-VGVTINRSLNTKL 518

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
              ++ +    LI  +   P R+ +  +E+      E     L  +RK GI + +DDFGT
Sbjct: 519 DSLQILQRSHDLIKASGVDPKRVTIELTETAYFEQDEEHTRALEEVRKEGIEIAIDDFGT 578

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEID 923
             S  SYL    FD +K +   +    +   +  I++ +  +A+ +   ++A+ +  + +
Sbjct: 579 GYSSFSYLEKGQFDLLKIDRKFVKNIHKGSTSYNIVKMVTELAQQMNVKVVAEGVESKQE 638

Query: 924 IKELTRMGCDYIQDSHVASPLGFN 947
           ++ L  +G DY+Q    ++ +  +
Sbjct: 639 LQVLAEIGVDYMQGFLFSAAVPVD 662


>gi|294341431|emb|CAZ89848.1| conserved hypothetical protein; putative PAS/PAC, EAL, GGDEF
           domains [Thiomonas sp. 3As]
          Length = 681

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 120/573 (20%), Positives = 216/573 (37%), Gaps = 28/573 (4%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
             L     I+++         I  + ER ++ ++   D V   D  R         A +L
Sbjct: 115 AFLGSVGTIRNISDRIALENAIRHERERAAVTLMALSDGVLTLDPQRRIEFLNHAAADLL 174

Query: 439 GLA--SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
           GL     ++H PI   L     + R             +   L    R+ A +  +  + 
Sbjct: 175 GLKLIDYALHRPIETVLALESGDIRSVVDEA---RAQQQMHTLDGRCRLHATEADWSDVD 231

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
           + + P+S ++      I +  D+ EQ+     +   A  D LT   NR   LD L     
Sbjct: 232 LTVIPLSEAD---EGCIIVLRDVREQRALQARLHHQARHDALTQALNRVGMLDELGRTHA 288

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
                     + +++D+D +K++ND  G A GD+ L  + R I   L+  D LAR  G  
Sbjct: 289 GFLRT-GATFSNILLDLDHFKRVNDQHGHAAGDEALRLVARAIQGALRADDHLARWGGEE 347

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF-ASWTSSKITSSEMLK 675
           F  +L   +    IA       +  A+ +    + I +T S G  A+      T  +ML+
Sbjct: 348 FLCLLPHTSLEQAIAIAERIRAEVQALELKQGRQPIPLTISAGVSAASPDRGDTLEQMLQ 407

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            A+ ++Y AK  G N V   R++      + +      A+    L L+Y PII L     
Sbjct: 408 RADFSLYEAKQAGRNCVWHERMTGE--GVLDLASQAQEALRAGRLDLMYQPIISLTTGAQ 465

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           VG E   +   P    + ++ FM   +++     ++  ++  +  D +  R Q +     
Sbjct: 466 VGQEGFARMRLPDGTPLKAARFMPALQQMHRAHWVDEKVIPLVLEDCLQGRLQGD----- 520

Query: 796 ILINIASKDLLDNELCEGMQ-ALISKTLYSPS-----RIKLSFSESVVMGNPERSRLLLG 849
             IN+++  L    L   +    + +T +S       RI L         +   +   L 
Sbjct: 521 CFINLSADLLRRPTLMHALLDDFLQRTAHSRQDQLLGRIVLELDFRAQQLDLGAACTALQ 580

Query: 850 RLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAK 907
                G  L L   G     L++   +P   +K + + +    +  K   IL SI+ +AK
Sbjct: 581 PWMAAGARLALKQSGPDLPTLAHWTELPIRFLKIHAAHLKRAATAPKAHLILSSIVRLAK 640

Query: 908 NIETTIIAKDIYGEID---IKELTRMGCDYIQD 937
            +    +A  +        +     +G D++Q 
Sbjct: 641 QLGCLTVADQVDQIDQPDLLDVARELGLDWLQG 673



 Score = 69.6 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
            D+V+           +P   T+ G       G  RN L +++ +DR             
Sbjct: 24  RDVVFRTRGKTFWSYLSPAWTTLTGFTVEESLG--RNILDFVYPDDRPANSLRKQQLESG 81

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
                ++  R+   D  F W+ + +R + + +G  L  +G   +I+++      I   
Sbjct: 82  EISASRHTKRLLRRDGSFVWIEVDLRVLYDGDGAFLGSVGTIRNISDRIALENAIRHE 139


>gi|16761336|ref|NP_456953.1| hypothetical protein STY2651 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140968|ref|NP_804310.1| hypothetical protein t0447 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053308|ref|ZP_03346186.1| hypothetical protein Salmoneentericaenterica_10527 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425513|ref|ZP_03358263.1| hypothetical protein SentesTyphi_07491 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213647042|ref|ZP_03377095.1| hypothetical protein SentesTy_06861 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213857716|ref|ZP_03384687.1| hypothetical protein SentesT_21531 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25512764|pir||AF0808 probable membrane protein STY2651 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503635|emb|CAD07648.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136593|gb|AAO68159.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 729

 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 150/429 (34%), Gaps = 24/429 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L   L  +        +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALGQFL---LQDAGQ------SVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGF 946
             +  P   
Sbjct: 719 YLIGRPRPL 727


>gi|104779434|ref|YP_605932.1| signal transduction protein [Pseudomonas entomophila L48]
 gi|95108421|emb|CAK13115.1| putative signal transduction protein; GGDEF/EAL domain [Pseudomonas
           entomophila L48]
          Length = 648

 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 178/436 (40%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ +  E +   ++QD+LTG+ NR+ F  +L   +  S  ++     ++++ +     +
Sbjct: 223 TEQAERSEKLRTESYQDSLTGLANRRYFEMQLNARV--SNLEEARAGYLLLLRVQDLAGL 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           N  LG    D +L ++  ++           D++ R  G  F ++     +  +    A 
Sbjct: 281 NARLGGQRTDQLLQAVGEQLRRTCANYPETNDLITRSRGGEFAVLAPGMVH-DEAIQLAQ 339

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHV 692
           A+  ++         ++   A IG A +        ++LK A+ A+  A+ +   G   +
Sbjct: 340 ALAATLQSLHETGASDVDPVACIGLAPYNP-GDAPQDLLKLADEALARAESQPQPGWVCL 398

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM-DEEIVGLEALIQWDHPKWGN 751
           E    +            L  A+   +  L + P++     + ++  + + +    +   
Sbjct: 399 EQGAAADAADSHHAWHTRLDQALAKGQFELFFQPVVDCRATDRVLHYKVISRLHDEQGEA 458

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           +++  F+   E    +  ++L +LE++ + +    +        + +N+++  L D +  
Sbjct: 459 LAAGRFLPWLERFGWMARLDLLVLEKVLKHLQGHGES-------LALNLSAATLADPKAL 511

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+ +      R+     E  +         L  RLR +G SL L  FG + S++ 
Sbjct: 512 QRVFELLGQYRAIGPRLTFEIGEEQLPEQ-SMLEQLTRRLRGLGFSLALQRFGGRFSMIG 570

Query: 872 YLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++    +K +G  +     +R     + +I   A +I+  +IA+ +  E ++K L  
Sbjct: 571 NLAHLGLAYLKIDGGYIRNIDHERHKRLFIEAIQRAAHSIDLPLIAERVETEGELKVLRE 630

Query: 930 MGCDYIQDSHVASPLG 945
           MG   IQ   V  P  
Sbjct: 631 MGVQGIQGQLVGEPAP 646


>gi|256043260|ref|ZP_05446197.1| EAL [Brucella melitensis bv. 1 str. Rev.1]
 gi|265989685|ref|ZP_06102242.1| EAL domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263000354|gb|EEZ13044.1| EAL domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 594

 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|84623025|ref|YP_450397.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366965|dbj|BAE68123.1| response regulator [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 447

 Score =  261 bits (666), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 181 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 240

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A +S    SP+ 
Sbjct: 241 HALTQQVIDKAIAQLLDWRAEGFD--LSLALNLSPRLLGEDHFLEELCAKLSDNGLSPAD 298

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 299 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 357

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 358 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 417

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 418 GPMLSEWWREH 428


>gi|300718299|ref|YP_003743102.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
 gi|299064135|emb|CAX61255.1| diguanylate cyclase/phosphodiesterase [Erwinia billingiae Eb661]
          Length = 424

 Score =  261 bits (666), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 3/244 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ N E  + Y P++      I G EAL++W+HPK G +  SEF+  A++  ++ ++
Sbjct: 175 LQNAIYNDEFVIYYQPLLN-SLGHISGAEALLRWNHPKKGLVPPSEFIPDAQQAGLMPSV 233

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
             +++    +++  WR       + + IN+    L+  +  + +         +PS +K+
Sbjct: 234 GEWVIVNAFKELAEWRLDPKTSHLTLSINVTVDHLMKPDFVQSLLNQAKIAQITPSLVKI 293

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ESV   + E     +  L   G   +LDDFGT  S LSYL  +P + +K + S + G
Sbjct: 294 ELTESVFASDIETVVAKMTALSNAGFRFSLDDFGTGFSSLSYLRRLPLEQIKIDRSFVFG 353

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + E  K   I R I  M  +++  ++A+ I        +   GC   Q  + + PL    
Sbjct: 354 AKESMKGAVIARHIARMGLDLKLEVLAEGIETPEQWSLMKSFGCTAFQGFYFSRPLSIAD 413

Query: 949 ILKL 952
             + 
Sbjct: 414 FREF 417


>gi|269836060|ref|YP_003318288.1| diguanylate cyclase with PAS/PAC sensor [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785323|gb|ACZ37466.1| diguanylate cyclase with PAS/PAC sensor [Sphaerobacter thermophilus
           DSM 20745]
          Length = 610

 Score =  261 bits (666), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 104/514 (20%), Positives = 194/514 (37%), Gaps = 32/514 (6%)

Query: 217 MLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWN 276
           +++  F + W V+ Y +      S L       L +    +++ +     + L       
Sbjct: 107 VVVGGFMVLWYVVLYPTATAENASLL----EWVLSVAYPLADVLVLFGAAVALVRLPDAR 162

Query: 277 RWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHG------ 330
           R  A +  +    IA +      S  +    A           +     ++         
Sbjct: 163 RTTAHI-LLCVGFIAFLVADTGWSRLWLAG-AYNPESWPGIAYVLCYLLVVAAAHVRERV 220

Query: 331 ------------MKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLI 378
                        +G+   + +  A  L+ + F+ L       L    +   +   L L+
Sbjct: 221 ERMPPDVVPRPGTRGWRWRLSISSAASLLGVGFLLLAGLRQGSLSLAGMLFGVAALLTLV 280

Query: 379 VILIGFTVIQHVL---ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIA 435
           ++  G  + ++      T   +Q +     R    V    D++            +P   
Sbjct: 281 LLRQGLIIRENAALLARTVALAQALRRSERRFRALVQNVSDLIVILGPDGTIRYVSPAAE 340

Query: 436 TILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
            +LG     + G +    P +H +D    R  L   +       + E R R  D  +H +
Sbjct: 341 HLLGYPPDELQGTVVY--PLVHPDDLSLLRRELAHILKQPGVVRRVELRARHRDGSWHHL 398

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTIL 555
              +  +  ++ D+   + +  DI E+K+    +   AF D LTG+PNR  F+ R+    
Sbjct: 399 EAAVSNLL-TDPDVGGVVAVMRDICERKELEAQLRHQAFHDPLTGLPNRTLFMHRVDLAF 457

Query: 556 DLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGN 615
             +  +      ++ ID+D +K +ND  G  VGD +LV + +R+   L+  DI ARL G+
Sbjct: 458 AEAERNGRT-AALVFIDLDDFKSVNDTFGHEVGDLLLVKVGQRLAATLRDGDIAARLGGD 516

Query: 616 RFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLK 675
            F ++     +       A  +  +++ PI    R+ TVT SIG A      I+  EML+
Sbjct: 517 EFAVLFDDVESHADAVAAANRLLAALSQPIRAAGRDFTVTPSIGLAVHNP-GISPREMLR 575

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
            A+ AMYHAK RG   +E +      +    + +
Sbjct: 576 RADHAMYHAKARGRGCLEIYTAGLNVAGWKQVAQ 609


>gi|157736798|ref|YP_001489481.1| EAL/GGDEF domain-containing protein [Arcobacter butzleri RM4018]
 gi|157698652|gb|ABV66812.1| EAL/GGDEF domain protein [Arcobacter butzleri RM4018]
          Length = 541

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 159/421 (37%), Gaps = 30/421 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D LT +PNR      L                +   DID +  +ND+ G  +GD +LV L
Sbjct: 139 DKLTNLPNRNRLKKDLNQ---------TDDVLMAFFDIDGFLTLNDLFGEEIGDGILVEL 189

Query: 596 TRRIGELLKFPDI-LARLSGNRFGIILISENN--SLKIADFAIAMRKSIAMPINLLEREI 652
           + ++ E     +  + +L  ++F ++ ++               + K       + E EI
Sbjct: 190 SYKLKEHFPANEYSVYKLDVDKFVVVAVNSGKSVEEFYKYTKSFISKIENQSFLVNENEI 249

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRVSSFRSDRVMIKE 709
            +  ++G +         +   K A+  + +A+ +    +     F +     + +   +
Sbjct: 250 DINLTVGVS-----HANGALAYKYAQRTITYARTKLRKIMIYNDSFNIHQSFENNIKWLK 304

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L    + ++    + PI+    +EI   EALI++       +    F+ IA++      
Sbjct: 305 QLKNGFKENKFQAYFQPIVDTQTKEIYKYEALIRYIDENGNEVGPYNFLDIAKKTKQYPN 364

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP-SRI 828
           I   +L+   + I             + INI+  D+ +    + +   ++         +
Sbjct: 365 IIKVILKDALKLIKEKNK-------KVSINISYADISNKNTTKYIYDFLTAQSIEHTKLL 417

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
                ES  + + E     +  ++K    + +DDFG   S    L  +    +K +GSL+
Sbjct: 418 SFEILESEEIVDFEEVSRFISEVKKFECIVGIDDFGAGYSNFHLLSKLKISFIKIDGSLI 477

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 +    I+R+I  +AK      +A+ +  E    ++  +  DY Q  +   P+ +
Sbjct: 478 QNIHNSKDLEIIVRTISNIAKEFNVKTVAEFVANEEIYNKVKELNIDYSQGFYFDKPISY 537

Query: 947 N 947
           +
Sbjct: 538 D 538


>gi|54294490|ref|YP_126905.1| hypothetical protein lpl1559 [Legionella pneumophila str. Lens]
 gi|53754322|emb|CAH15799.1| hypothetical protein lpl1559 [Legionella pneumophila str. Lens]
          Length = 532

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 9/254 (3%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  + LA++N E Y VY P+    +E   G+E L++W++     I    F+  AE   
Sbjct: 279 SLQGAIKLAIKNEEFYPVYQPLFDCDEERFTGVEVLLRWENEDSQIIMPDFFIAEAEATG 338

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I L ++E   ++  S  ++ +     +  NI++    D+        LI K   SP
Sbjct: 339 LIVPITLQIIEIACKEFRSLLEERSY--FHLAFNISALHFTDSVFFNQFHKLIEKYNISP 396

Query: 826 SRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +I    +E  ++  N       +  LR+ G SL +DD+GT  + +SYL + PF+ +K +
Sbjct: 397 HQIIFEITERELLDKNDTTFINKMQELRQAGFSLAVDDYGTGHASISYLQHFPFNYLKID 456

Query: 885 GSLMTGSTEKRIAILR----SIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
              +         I+     +II MAK +    IA+ +  +     L   G    Q  + 
Sbjct: 457 KLFVQAIGSND--IIESLNDAIIQMAKGLNLVTIAEGVETKDQANYLANNGVRLQQGWYY 514

Query: 941 ASPLGFNSILKLLK 954
           +  L    +  LLK
Sbjct: 515 SKGLSIAELTALLK 528


>gi|70733638|ref|YP_257278.1| GGDEF domain-containing protein [Pseudomonas fluorescens Pf-5]
 gi|68347937|gb|AAY95543.1| GGDEF domain protein [Pseudomonas fluorescens Pf-5]
          Length = 648

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 173/435 (39%), Gaps = 22/435 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ +  E +   ++QD+LTG+ NR+ F  +L   +       +    ++++ +     +N
Sbjct: 224 EQAERSEKLRTESYQDSLTGLANRRYFEMQLHARVSNPEQASSGY--LLLLRVKDLAGLN 281

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
             LG    D +L ++  ++           +++ R+ G  F ++        +    A +
Sbjct: 282 QRLGGQRTDQLLKAVGEQLLRECDKYPETHNLVTRVRGGEFAVLAPGLV-REEAIQLAQS 340

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++         ++   ASIG A++ +   +   +L   + A+  A+ +G        
Sbjct: 341 LDSALGNLHATGATDVASVASIGLAAF-AHGDSPQAVLSLGDQALAQAEAQGDTSWACLD 399

Query: 697 VSSFRS---DRVMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNI 752
             +      D       L  A+      L + P++   D   ++  + L +    +   I
Sbjct: 400 QGASAQVGDDHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSRLLDEQGQTI 459

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+   E       ++L MLE++ R + S  D        + +N+++  L D     
Sbjct: 460 PAGRFLPWLERFGWTSRLDLLMLEQVLRQMASHED-------CLALNLSAATLADPHALN 512

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++ +      R+ L   E  +         L  RLR++G SL+L  FG + S++  
Sbjct: 513 RVFEILRQHSDLGPRLTLEIGEEQLPEQ-AMLEQLTRRLRELGFSLSLQRFGGRFSMIGN 571

Query: 873 LGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +    +K +GS +    +   +   + +I   A +I+  +IA+ +  E +++ +  M
Sbjct: 572 LARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELQVIREM 631

Query: 931 GCDYIQDSHVASPLG 945
           G   +Q      P  
Sbjct: 632 GLYGVQGQLFGEPAP 646


>gi|62182713|ref|YP_219130.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130346|gb|AAX68049.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322717213|gb|EFZ08784.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 540

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 266 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 325

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 326 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 383

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 384 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 442

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 443 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 502

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 503 QYCQGWHFAKALPPQEFIAWLQQ 525


>gi|323171483|gb|EFZ57129.1| EAL domain protein [Escherichia coli LT-68]
          Length = 528

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQEQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+  +         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGDYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|317051729|ref|YP_004112845.1| EAL domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946813|gb|ADU66289.1| EAL domain protein [Desulfurispirillum indicum S5]
          Length = 542

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 162/432 (37%), Gaps = 36/432 (8%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                A ++ L+G  NR + L+ L                + ++ ID Y++ +++    +
Sbjct: 130 RQYVLATKNPLSGFANRTALLEDL---------RSQRHTALFILAIDSYEEFHEIHAREM 180

Query: 588 GDDVLVSLTRRIGELLKFPD----ILARLSGNRFGIILISENN---SLKIADFAIAMRKS 640
            D + +   +R+   +         L       F ++L +  +     + +     +   
Sbjct: 181 VDSIELEFAQRLYSAVPHSFDMPLNLYHFGDGEFALLLKNGTSEVGPERASGICQQLHDL 240

Query: 641 IAM-PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
           +    I + + +  ++ +IG++  + +        +NA +A+ +A+     HV +  +  
Sbjct: 241 VQRGSITINQNDFEISVTIGYSISSRNT------YENARMALRYAQKTRRPHVLAEEIQE 294

Query: 700 FRSDRVM----IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                V         L  A+++  +   Y P++      I   E+L++         S  
Sbjct: 295 QVHQSVQHNFNWLRKLKEAIQDDNIVAYYQPLLNNATNTIERYESLVRLIDEDGTVHSPF 354

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+ +A+       +   ++E+                    IN+   D+  + +   + 
Sbjct: 355 HFLPVAKSSRYYFFLTQSVVEQSFDIFADSEAGF-------SINLTKDDIEQDFIRGFLL 407

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I +   +  R+   F E   + N  + +  + ++++ G+ + +DDFG+  S    L  
Sbjct: 408 KKIMENPETAKRLTFEFVEDESLQNFGQVKKFIDQIKQYGVKIAIDDFGSGYSNFERLLE 467

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +GSL+        +  I+ +I   A       +A+ +  E   + +  +G D
Sbjct: 468 LQADVLKIDGSLVKDIDHNPVKRHIVETIKTFADKTNMQTVAEFVSSEEIFRIVREIGID 527

Query: 934 YIQDSHVASPLG 945
           Y Q  +V+ P  
Sbjct: 528 YSQGYYVSPPQP 539


>gi|326625957|gb|EGE32302.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 486

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 212 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 271

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L   L   +
Sbjct: 272 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSFRLIVMI 329

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 330 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 388

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 389 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 448

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 449 QYCQGWHFAKALPPQEFIAWLQQ 471


>gi|320196243|gb|EFW70867.1| hypothetical protein EcoM_01635 [Escherichia coli WV_060327]
          Length = 729

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 156/430 (36%), Gaps = 22/430 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++            A +     +   + ID  + ++   
Sbjct: 317 WLNRRWHLQALTDPLTLLPNFRALEQ---------APEQEAGKSFCCLRIDNLEFMSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +    + S+ R +  L++  + L +L G+   ++L       ++      +    + 
Sbjct: 368 GLMMRVHCIRSIYRTLLPLMQENEKLYQLPGSELLLVLSGPETEGRLQHMVNILN---SR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
            I+     + +     +  +  ++ T   +L         +               VS  
Sbjct: 425 QIHWNNTGLDMGYGAAWGRFDGNQETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQ 484

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            + +V++   +  A++  +L L   PI     E   G + ++       G ++  +F+ +
Sbjct: 485 TTKQVLLLNTIRTALDQGDLLLYAQPIRNKEGE---GYDEILARLKYDGGIMTPDKFLPL 541

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  +    +L +LE + + + +       P     +N+    LL   +   +  L  +
Sbjct: 542 IAQFNLSARFDLQVLESLLKWLATHPCDKKGP--RFSVNLMPLTLLQKNIAGRIIRLFKR 599

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              SP  + L  +E     N E S   + +L K G  + +DDFGT  +    L  +  D 
Sbjct: 600 YYISPQAVILEITEEQAFSNAESSMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADI 659

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I+RSI  +AK    +++A+ +        L ++G  Y+Q  
Sbjct: 660 IKIDGVFVKDIVTNTLDAMIVRSITDLAKAKSLSVVAEFVETPQQQALLHKLGVQYLQGY 719

Query: 939 HVASPLGFNS 948
            +  P     
Sbjct: 720 LIGRPQPLAD 729


>gi|261220184|ref|ZP_05934465.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260918768|gb|EEX85421.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 563

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 226 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 285

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 286 PIAENSKVISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 343

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 344 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 402

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 403 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 462

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 463 GWLYSPPLPAQEFIEFYKAQ 482


>gi|126667638|ref|ZP_01738607.1| PAS sensor diguanylate cyclase and phophodiesterase [Marinobacter
           sp. ELB17]
 gi|126627907|gb|EAZ98535.1| PAS sensor diguanylate cyclase and phophodiesterase [Marinobacter
           sp. ELB17]
          Length = 295

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 117/285 (41%), Gaps = 8/285 (2%)

Query: 673 MLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIK----EDLCLAVENSELYLVYHPII 728
           ML+  ++A Y AK++G N V    V   +     I+      + +A++ +  +L    I 
Sbjct: 1   MLRAVDIACYVAKNQGRNRVYLSVVDDVQISEQRIEMEWLNRIQVALQENRFFLDAQLIA 60

Query: 729 RL-MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD 787
                   +  E L++    +   I    F+  AE   +   I+ +++  + R + +   
Sbjct: 61  PTVKGGRGLRYEVLVRLKDKEGKTIPPGAFLPAAERFGIAHKIDRWVINEVFRQLAAHTA 120

Query: 788 QANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLL 847
             N       IN++ +     +  E +   +     S  +I    +E+  + N   ++  
Sbjct: 121 HLNELDA-CHINLSGRSFDQPDFAEFVIERLQHYGLSGGKICFELTETAAIHNFADAQNF 179

Query: 848 LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPM 905
           +  L     S  LDDFGT  S  SYL  +P D +K +G  +         +A++R+I  +
Sbjct: 180 MALLGDSKCSFALDDFGTGLSSFSYLRRLPVDYLKIDGVFVRDIATDQTDLAMVRAINDI 239

Query: 906 AKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            K ++   IA+ +     ++ L  MG D+ Q   +  P  F  +L
Sbjct: 240 GKTLQKKTIAEFVENNETLELLKEMGVDFAQGYGLHRPCRFQDML 284


>gi|293417566|ref|ZP_06660188.1| yjcC protein [Escherichia coli B185]
 gi|291430284|gb|EFF03282.1| yjcC protein [Escherichia coli B185]
          Length = 528

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTSIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|294664419|ref|ZP_06729775.1| c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292605804|gb|EFF49099.1| c-di-GMP phosphodiesterase or signal transduction protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 626

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 6/308 (1%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+++  + +   AF D LTG+PNR  F  R    L  +         +M I+ID++K IN
Sbjct: 319 EREQIRQRVHQLAFYDTLTGLPNRIMFSARAEQALTQA-EYAGEPAALMFINIDRFKLIN 377

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           D  G A GD +L  +  R+ + +    +LARLSG+ F + L   + + + +  A  +  S
Sbjct: 378 DSQGHAAGDGLLRDIALRVNDQVTATAMLARLSGDEFALALPQCS-AEQASAAAERLLVS 436

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
           IA P+ +    +  +ASIG A +       + +L++A+LAM  AK  GG     F     
Sbjct: 437 IASPLPVGHMTVHPSASIGVAMFPEDGQDINILLRHADLAMNRAKKEGGGRFRFFSSDMN 496

Query: 701 RS--DRVMIKEDLCLAVENSELYLVYHPI-IRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
           R   +RV ++ +L  A++ ++L L Y P         + G+EAL++W+HP+ G +S + F
Sbjct: 497 RMAQERVALEAELRQAIDRNQLQLHYQPQMHSAAPHTLYGVEALLRWNHPQLGAVSPARF 556

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  M+  IN ++L    + +  WR Q  +P   + +N+++       +   +  L
Sbjct: 557 LPVAEEQGMMPQINAWVLRSACQQVADWR-QRGVPVARVSVNLSASGFESPRMLPDLLRL 615

Query: 818 ISKTLYSP 825
           I++   + 
Sbjct: 616 IAEMGVAA 623



 Score = 76.5 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIRNWLPY 455
            Q         + A+ GS   +   D+    +        + G     + G    + L  
Sbjct: 35  EQPEQRRARLLAEALDGSSSAILICDLQSRLLYANDGFQRMFGYTEAELVGLRPSDVLTR 94

Query: 456 IHIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYI 513
              +  +    R   D+    R   L Y       D    W+ +   P+ ++N     Y+
Sbjct: 95  AQSDQSEVARVRDRADALQHTRADLLVY-----RKDGTPLWISLNFNPIYDANHAPSHYV 149

Query: 514 GIANDITEQKKSL 526
            +  DIT+ K   
Sbjct: 150 AVLTDITDTKMHE 162


>gi|152971282|ref|YP_001336391.1| hypothetical protein KPN_02745 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330013656|ref|ZP_08307739.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
 gi|150956131|gb|ABR78161.1| hypothetical protein KPN_02745 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328533391|gb|EGF60129.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
          Length = 737

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 156/442 (35%), Gaps = 27/442 (6%)

Query: 516 ANDITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             DI  +  ++       A +D LTG+PN ++    L +           +  +  + ID
Sbjct: 306 MADIYARSDRNKRRWRSQAEEDPLTGLPNLRALESHLQSC---------PQQAICSLRID 356

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
               ++   G+ +G D    + R +  LL   D + ++ G+   ++L         +   
Sbjct: 357 NLDFLSRHYGLMMGVDCKRQIIRALQPLLGAADKVFQVPGSELILVLDG---PEPSSRLN 413

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---H 691
             +        +   + + +     +           +ML         A          
Sbjct: 414 HMVAVLNHKKFSWHNQPLDLEFGAAWGRDDGQGEGLYQMLGQLSWLSEQAGSERRVLALD 473

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            E   V    +++V +   +   +++  L L   PI     E   G   ++         
Sbjct: 474 EEQDLVVDQTTEQVRLLMRVKQVLKDRALMLYAQPIQNPEGE---GYHEILTRMRCGDSV 530

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +  +  + +  ++ +LE +   +         P     +N+    L+     
Sbjct: 531 IMPDRFIPLIVQFNLSQRFDMLVLETLFSMLHK------HPGQRFSVNLLPATLMQKNSA 584

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             + AL  +   SP  I +  +E     N + SR  L  LR  G ++ +DDFGT  +   
Sbjct: 585 GQIIALFQRYSVSPELITIEVTEEQAFSNADTSRQNLEALRAFGCAIAIDDFGTGYANYE 644

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++  D +K +G  +           +++SI+ MA+  + +++A+ +  E     L  
Sbjct: 645 RLKHLQADIIKIDGCFVRDILTDPLDAIMVKSIVEMARAKQMSVVAEYVESEPQKARLLE 704

Query: 930 MGCDYIQDSHVASPLGFNSILK 951
           +G +Y+Q   +  P        
Sbjct: 705 LGVNYLQGYLIGKPQPLGECRA 726


>gi|331655882|ref|ZP_08356870.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli M718]
 gi|331046236|gb|EGI18326.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli M718]
          Length = 528

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|225628793|ref|ZP_03786827.1| EAL domain-containing protein [Brucella ceti str. Cudo]
 gi|254699620|ref|ZP_05161448.1| EAL [Brucella suis bv. 5 str. 513]
 gi|254706123|ref|ZP_05167951.1| EAL [Brucella pinnipedialis M163/99/10]
 gi|254711578|ref|ZP_05173389.1| EAL [Brucella pinnipedialis B2/94]
 gi|254712175|ref|ZP_05173986.1| EAL [Brucella ceti M644/93/1]
 gi|254715245|ref|ZP_05177056.1| EAL [Brucella ceti M13/05/1]
 gi|256029786|ref|ZP_05443400.1| EAL [Brucella pinnipedialis M292/94/1]
 gi|260167108|ref|ZP_05753919.1| EAL [Brucella sp. F5/99]
 gi|294853340|ref|ZP_06794012.1| EAL protein [Brucella sp. NVSL 07-0026]
 gi|225616639|gb|EEH13687.1| EAL domain-containing protein [Brucella ceti str. Cudo]
 gi|294818995|gb|EFG35995.1| EAL protein [Brucella sp. NVSL 07-0026]
          Length = 594

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|197250470|ref|YP_002149178.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197214173|gb|ACH51570.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 516

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 242 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 301

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 302 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 359

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 360 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 418

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 419 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 478

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 479 QYCQGWHFAKALPPQEFIAWLQQ 501


>gi|26990419|ref|NP_745844.1| sensory box protein [Pseudomonas putida KT2440]
 gi|24985387|gb|AAN69308.1|AE016568_3 sensory box protein [Pseudomonas putida KT2440]
          Length = 503

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 97/380 (25%), Positives = 155/380 (40%), Gaps = 8/380 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441
              ++Q       +SQ +    +     +      V   D+   R+         + G  
Sbjct: 129 ELELLQAKELAEQYSQEMAKLSQFLDSVIANIPASVIVQDLESQRILLANQQAERLFGGP 188

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             SM G +      +     D             +G    E RV  A      +  R   
Sbjct: 189 QHSMIGQLP--RECLAPAAGDYLEQQFVRGARSTKGH-AAETRVDTARG-PRTLRSRTLL 244

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
             N  G     + +A D TE+  +   I   A  D LTG+PNR  F +RL   L   + +
Sbjct: 245 SQNREGQADYVLFVAEDATEELAAHAQIHHMAHHDALTGLPNRTLFHERLRQALLRGSEN 304

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
             L   +  +D+D +K IND LG A GD +L  L +R+   L+  D LARL G+ F ++L
Sbjct: 305 AKLTAALC-LDLDNFKNINDSLGHAFGDKLLRELGKRLRRELREHDTLARLGGDEFAVVL 363

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
                     + A  + K+I+ P  +   +  V  SIG A        + ++L  A++A+
Sbjct: 364 TGLEGRDAACNTAQRLIKAISPPFRIEGHQFAVGVSIGIAIAPDDHDQAEQLLGYADMAL 423

Query: 682 YHAKHRGGNHVESFRVSSF--RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           Y AK  G N  E F V        R +++ DL  A+   +L L Y P++      + G E
Sbjct: 424 YQAKRNGRNRYECFDVELDVAARQRRLVETDLRTALHLGQLQLHYQPVVDHQTSSVTGYE 483

Query: 740 ALIQWDHPKWGNISSSEFML 759
           AL++W+HP  G +   +F+ 
Sbjct: 484 ALLRWEHPTRGMVMPMDFIF 503



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 3/126 (2%)

Query: 407 QSLAVLGSGD-IVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFR 465
             L +    D  ++            P      G  +  + G   +        +R    
Sbjct: 11  YRLLIQSVVDYAIYLLTPEGIVANWNPGAQRAKGYRAEEIVGQHYSLFYT--DAERAAGL 68

Query: 466 TILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKS 525
              +       GR +        D       + I  + +  G ++ +  +  DI+E+ + 
Sbjct: 69  PAFNLEQARSTGRFEETGARLRKDGTAFHAHVVIEAVYDDAGQLVGFAKVTRDISERHRQ 128

Query: 526 LEGILC 531
              +L 
Sbjct: 129 ELELLQ 134


>gi|188990854|ref|YP_001902864.1| Two-component system response regulator,probable [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732614|emb|CAP50808.1| Two-component system response regulator,probable [Xanthomonas
           campestris pv. campestris]
          Length = 427

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 5/257 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLRDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++   L + +  E + A ++    +P+ 
Sbjct: 221 HALTQQVIDKAVAQLVDWRAEGLQ--LTLALNLSPNLLGEQDFLEHLCAKLADNGLAPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPEDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKERFPLVKN 962
              + +  +E    +  
Sbjct: 398 GPMLSEWWREHASRIAR 414


>gi|224373527|ref|YP_002607899.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
 gi|223589070|gb|ACM92806.1| diguanylate cyclase/phosphodiesterase [Nautilia profundicola AmH]
          Length = 655

 Score =  260 bits (665), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 97/571 (16%), Positives = 222/571 (38%), Gaps = 55/571 (9%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F+ +++VL+     Q   +  ++    V  S  IV   D+V +        A I G +  
Sbjct: 121 FSTMKNVLSHKLELQKQINLLQQYKTIVDES-LIVSKTDLVGNITYVNDAFADISGYSQD 179

Query: 444 SMHGPIRNWLPYIHINDR-DNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            + G   N +   H + + + F  + ++ +  +    +   + R  + + +++   I+P+
Sbjct: 180 ELIGQPHNIVR--HPDMKSEVFEELWNTILNKKT--WKGLIKNRKKNGEAYYVESIIKPI 235

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G+I  +I +  DIT    + + I      D L            L   L       
Sbjct: 236 FDKYGNIKEFIALRKDITNFINAEKLIS-----DKL----------QLLKEAL------- 273

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF--PDILARLSGNRFGII 620
                ++++ ID Y  I  +       ++ + + +RI + L     +I   +  +     
Sbjct: 274 -----LVLVKIDNYHNIKLIYDDETVTELKIKVLKRIKKFLNEYFENIEEYIIQDGMLGF 328

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLER-----EITVTASIGFASWTSSKITSSEMLK 675
           LI +     + D    + K I     ++        I ++ + G      + IT  E ++
Sbjct: 329 LIEKFKKENLDDIFKNIIKDIINNPIIINDFEYFPLIRISYAYGNIHLFKNAITGFEEIE 388

Query: 676 NAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
           N E  +  A           +        + I + +  A+ N+++  ++ PII   +++I
Sbjct: 389 NTEQRIIMANGL------CAKKKIETIKNMEILKTIKYALRNNKVISLFQPIIDNKNKKI 442

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +  E+L++        +S + F+ IA++  +   I + +L+   +             I 
Sbjct: 443 IKYESLVRIIDKDNNMLSPTYFLDIAKKSGLYSNITIKVLDNTFKIYRE-------KNIP 495

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I IN++  D+L   +   + +L++K       I     E  ++     +   + ++  + 
Sbjct: 496 ITINLSPNDILIESIRNRIYSLLNKYKPQKGMITFELLEDEIIQFEHTTNEFINKVIDLN 555

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
             + +DDFG+  S  + +     + +K +G L+        +  I+ +I+  AK      
Sbjct: 556 AEIAIDDFGSGYSNFTRIIEAKANIIKIDGVLIKDINIDKTKQDIVEAIVSFAKKENKKT 615

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           +A+ +  E     + ++G DY Q  + + PL
Sbjct: 616 VAEYVENEKIFNTINKLGVDYSQGYYFSKPL 646


>gi|310828945|ref|YP_003961302.1| hypothetical protein ELI_3379 [Eubacterium limosum KIST612]
 gi|308740679|gb|ADO38339.1| hypothetical protein ELI_3379 [Eubacterium limosum KIST612]
          Length = 789

 Score =  260 bits (665), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 173/400 (43%), Gaps = 10/400 (2%)

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                 TV ++D+  + K N +  I  G+ +L+S++  + ++      +  + G+RF  I
Sbjct: 395 RKGEPFTVYMLDVANFGKYNRIFSIETGNKILLSISSGLQKIFGEQ--IYHVYGDRFMGI 452

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
              ++    I      ++K +   I +      +   +G   +      +SE+++     
Sbjct: 453 NAMQDCDDGIQL---ELQKLMDSEITVGAASFQLKYKVGVCRYPEHGDNASELVRKLWQT 509

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +  AK      V  +  +          I E L   +E  +  + Y P+     +     
Sbjct: 510 LRFAKKYSEEGVVIYNQTVLNDVERESKILELLNRQIELQDFDVWYQPVYDYKKKCYTTA 569

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL++        I   E + +AE+  ++  +   +L +  + +    DQ       I +
Sbjct: 570 EALMRLQDENGQYIPPYEAIRVAEKNNLVTEVGELVLTKACQTMKFLSDQKTSIE-NITV 628

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ + L+D    +    +I ++  +P RI +  +E++++ +   +  +L ++   GI +
Sbjct: 629 NLSVQQLVDQNYGKKTLNIIRESGITPDRICVEITEALLLQSFPAAIDVLNQMHAAGIRI 688

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAK 916
            LD+FG+    +SY   +PF  VK +  L+    + +     ++ ++ M K  E  ++A+
Sbjct: 689 VLDNFGSGEVSISYFSQVPFAFVKLDHRLVQQVQQNQEQFEFVQKMVEMIKIKEVKVVAE 748

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
            +  + D+  + R G DY+Q  + + PL  N   +L+K++
Sbjct: 749 RVETKEDLNWMIRCGADYVQGYYYSKPLEENDFWELVKKK 788


>gi|218548352|ref|YP_002382143.1| hypothetical protein EFER_0974 [Escherichia fergusonii ATCC 35469]
 gi|218355893|emb|CAQ88508.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
          Length = 782

 Score =  260 bits (665), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 160/382 (41%), Gaps = 10/382 (2%)

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           +I     + +  V G+   + V+  L RRI E       +  LS + + ++         
Sbjct: 398 MIKFCGLESLEAVFGVEERNKVVKVLCRRIAEKFAQSCDIVTLSSDLYFLLC-----REN 452

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +  FA  +         L  R I +  S  +         +   ++  +LA+   ++   
Sbjct: 453 VRAFANNIALVETFEKGLGYRNIRIHNSAIYEFL--KGEAAYGYVEKLKLALSSIRNHMF 510

Query: 690 NHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           +          +   + + I  ++  A++  EL+LVY PI+ +  + I+G EAL +W   
Sbjct: 511 SEFILCDNDKLNEIEENIWISRNIRRAMKEGELFLVYQPIVDIRSQGILGAEALCRWVSE 570

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRD-QANMPPIFILINIASKDLL 806
           + GNIS  +F+ IAE++  I  +  +++E    +   +R          + IN++   L 
Sbjct: 571 ERGNISPLKFISIAEDIGFINELGNWIIETAMHEFAEFRAKAQLREDFHLHINVSPWQLN 630

Query: 807 DNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTK 866
           +    E + A +S +   P +I +  +E+VV    +     +   R+ G ++ +DDFGT 
Sbjct: 631 EPLFYERIMACLSSSGLQPQQICIEITETVVERINDYFYQNIAVFREQGFTIAIDDFGTG 690

Query: 867 CSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
            S L     I  D++K +    +        I++ I+ +A++    ++A+ +        
Sbjct: 691 LSNLKRFYEINPDSIKIDYEFTSDIFGTAGKIIQVILDLAQDNHIPVVAEGVETPEIASA 750

Query: 927 LTRMGCDYIQDSHVASPLGFNS 948
           L  +GC   Q      PL F++
Sbjct: 751 LMDIGCVQAQGYLYQKPLPFSA 772


>gi|298499577|ref|ZP_07009383.1| GGDEF family protein [Vibrio cholerae MAK 757]
 gi|297541558|gb|EFH77609.1| GGDEF family protein [Vibrio cholerae MAK 757]
          Length = 572

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 162/361 (44%), Gaps = 6/361 (1%)

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             +I +++ + + I      D  TG  NR +   +L   + L+   ++    V+ I    
Sbjct: 186 HQEIDKRRAAEQQIEYQRSHDLGTGFLNRTALEQQL--AMQLAQLAEHEELAVIHIGFAN 243

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +++   LG  + DDVL  L  R+G + +   + AR +     +IL +     ++     
Sbjct: 244 ARQLQARLGYHLWDDVLKQLRERLGPVTEGELLTARPNSTNLTLILKAHPLDTQLNQLCH 303

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVES 694
            +  +           + +   IG A    +     ++L++A  +M   K  G      S
Sbjct: 304 RLIHAGQAQFVTEGLPVHLNPYIGVALSRET-RDPQQLLRHAVSSMLACKDSGYKVFFHS 362

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
             ++   + +  ++  L  AV N++L L + P + +  +  VG EAL++W HP  G  S+
Sbjct: 363 PALADNHARQNQLENYLLQAVRNNDLLLYFQPKVSMKTQRWVGAEALLRWKHPVLGEFSN 422

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
              + +AE+  +I  +  F+L +  +    W      P   I IN++S  L ++   E +
Sbjct: 423 ETLIHMAEQNGLIFEVGHFVLHQALKAASDWLAVC--PTFCIAINVSSVQLKNSGFVEQI 480

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
           + L++   +   +++L  +ES ++ +   +  +L RL  +G++L+LDDFGT  +   YL 
Sbjct: 481 RDLLALYCFPAHQLELEITESGLIVDEPTASDILNRLHTLGVTLSLDDFGTGYASFQYLK 540

Query: 875 Y 875
            
Sbjct: 541 N 541


>gi|300899819|ref|ZP_07118034.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 198-1]
 gi|300356626|gb|EFJ72496.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 198-1]
          Length = 527

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|293402700|ref|ZP_06646797.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298378229|ref|ZP_06988113.1| yjcC protein [Escherichia coli FVEC1302]
 gi|291429615|gb|EFF02629.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298280563|gb|EFI22064.1| yjcC protein [Escherichia coli FVEC1302]
          Length = 527

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|331680992|ref|ZP_08381629.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H299]
 gi|331081213|gb|EGI52374.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H299]
          Length = 528

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGVYLAT--HVDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|168243670|ref|ZP_02668602.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194449156|ref|YP_002048255.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194407460|gb|ACF67679.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205337338|gb|EDZ24102.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 533

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|56416063|ref|YP_153138.1| hypothetical protein SPA4080 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161617400|ref|YP_001591365.1| hypothetical protein SPAB_05255 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168263406|ref|ZP_02685379.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|200388643|ref|ZP_03215255.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|238912721|ref|ZP_04656558.1| hypothetical protein SentesTe_16542 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56130320|gb|AAV79826.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161366764|gb|ABX70532.1| hypothetical protein SPAB_05255 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|199605741|gb|EDZ04286.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205347892|gb|EDZ34523.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 533

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|311696654|gb|ADP99527.1| response regulator receiver domain protein (CheY) [marine bacterium
           HP15]
          Length = 598

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/662 (14%), Positives = 195/662 (29%), Gaps = 110/662 (16%)

Query: 40  SDRVLDLTSITRIYVNQGEDFQVFTAADIDGISR----RIEVSASSIRHRGDWAVFALAN 95
           S  V              ++  +     +           EV          W    +  
Sbjct: 20  SAPVQAAPVAFDWLEAPEDELALEDVRALPPGDWQTSGSSEVFNRGFSDGSFWLKVEI-- 77

Query: 96  TSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINP 155
                  R++ + +  L     +    G       T        R  +  + VF +  N 
Sbjct: 78  -PPEPANRVMEIGYPLLDEVSVYWVLNGELIQTHHTGDTLPFGSRPIHHRNFVFLVPSNT 136

Query: 156 GAVVTFIMEISTPNLPQIYLW--EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVN 213
              VT  + + T    QI L       +         ++ + +G+   +A++    +++ 
Sbjct: 137 -EPVTAFVRVKTLGSVQIPLEVIPSAEFLANEQLSYGWQTMFLGIIVAMALYNLFLFVIV 195

Query: 214 RSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSLIIFLFMY 272
           R S  +                 G L +       G    +          S IIF   +
Sbjct: 196 RHSTYLWYVLTVVFTGLVQLNFNGLLFQWLWPDAPGINRYFTVPVICFALFSAIIFAIRF 255

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
           L+   +  +        +  I+  F  + +            +  +            + 
Sbjct: 256 LNIRSYSLRSYRFLQWVLTAISACFVFTLFGSYQ------TGIVLVSGIAALVTPAAWVI 309

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G+              +W  G  +     L      P L+G L+L V  +G  + +  L 
Sbjct: 310 GF-------------LVWRKGQVLGGFYMLA---WTPLLIGHLILAVSKLGI-MPRSFLT 352

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                 G+  +    S A+                                         
Sbjct: 353 EFMPQIGVALEVVLLSFALAY--------------------------------------- 373

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
              I++  R        +    ++  L  E RV+                          
Sbjct: 374 --RINLERRKRHEAQEQALSIQQQANLTLEMRVQERT----------------------- 408

Query: 513 IGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
                   E +++ E +   +  D LT + NR+ F ++L      +    +   +++++D
Sbjct: 409 -------DELERANEQLRAISLTDGLTHVANRRRFDEKLQDEWKRAQRHGH-PLSLLLLD 460

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIA 631
           ID +K++ND LG  VGDD L  +       ++   D+LAR  G  F I+L +      + 
Sbjct: 461 IDHFKRVNDELGHLVGDDCLTEVAALCAAEVQRSGDLLARYGGEEFIILLPATPEEGAVR 520

Query: 632 DFAIAMRKSIAMPINLLER--EITVTASIGFAS-WTSSKITSSEMLKNAELAMYHAKHRG 688
                 +     P+   ER   +++T S+G A       +   E+++ A+ A+Y AK  G
Sbjct: 521 VAERVRQAVARSPVYSSERVAPVSLTISVGVACVVPDPDMEPQELIRQADEALYSAKESG 580

Query: 689 GN 690
            N
Sbjct: 581 RN 582


>gi|21232134|ref|NP_638051.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767737|ref|YP_242499.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113884|gb|AAM41975.1| response regulator [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573069|gb|AAY48479.1| response regulator [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 427

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 124/257 (48%), Gaps = 5/257 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLRDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++   L + +  E + A ++    +P+ 
Sbjct: 221 HALTQQVIDKAVAQLVDWRAEGLQ--LTLALNLSPNLLGEQDFLEHLCAKLADNGLAPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPEDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKERFPLVKN 962
              + +  +E    +  
Sbjct: 398 GPMLSEWWREHASRIAR 414


>gi|224586032|ref|YP_002639831.1| hypothetical protein SPC_4328 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470560|gb|ACN48390.1| hypothetical protein SPC_4328 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 533

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|331675592|ref|ZP_08376339.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA280]
 gi|331067200|gb|EGI38608.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA280]
          Length = 527

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGVYLAT--HVDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 LFAKAMPPQVFMQWMEQ 518


>gi|325276530|ref|ZP_08142283.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324098338|gb|EGB96431.1| diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 648

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 179/436 (41%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ +  E +   ++QD+LTG+ NR+ F  +L T +  S  ++     ++++ +     +
Sbjct: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNTRV--SNLEEARAGYLLLLRVQGLAGL 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           N  LG    D +L ++  ++           D+++R  G  F ++  S  +   +   A 
Sbjct: 281 NARLGGQRTDQLLQAVGEQLRRTCASFPETKDLISRSRGGEFAVLAPSMVHEEAV-QLAQ 339

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHV 692
           A+  ++         ++   A IG A ++        +LK A+ A+  A+++   G   +
Sbjct: 340 ALEATLLSLHETGASDVHPVACIGLAPYSP-GDAPQALLKLADEALARAENQPTPGWVCL 398

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGN 751
           E    +     +    E L  A  N    L + P++     + ++  + + +    +   
Sbjct: 399 EQGVAAVAADSQHAWHERLDQAFNNGRFELFFQPVVDTATAQRVLHHKVISRLQDGQGEA 458

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           + +  F+   E    +  +++ +LE++   +             + +N+++  L D +  
Sbjct: 459 LPAGRFLPWLERFGWMPRLDVLVLEKVLAHLR-------GHDQVVALNLSAATLGDAKAL 511

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+ +      R+     E   + +      L  RL  +G  L L  FG + S++ 
Sbjct: 512 QRVFELLGQNAALGPRLVFEIGE-EQLPDQAALEQLTRRLHGLGFGLALQRFGGRFSMIG 570

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++    +K +GS +     +  +   + +I   A +I+  +IA+ +  E + K L  
Sbjct: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERKVLQE 630

Query: 930 MGCDYIQDSHVASPLG 945
           MG   IQ   V  P  
Sbjct: 631 MGVGGIQGQLVGEPAP 646


>gi|301021593|ref|ZP_07185591.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 69-1]
 gi|300397964|gb|EFJ81502.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 69-1]
          Length = 528

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|254701284|ref|ZP_05163112.1| diguanylate cyclase [Brucella suis bv. 5 str. 513]
 gi|261751825|ref|ZP_05995534.1| GGDEF domain-containing protein [Brucella suis bv. 5 str. 513]
 gi|261741578|gb|EEY29504.1| GGDEF domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 205

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 122/201 (60%)

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IAE   +I  + LF ++R A D+ +W++Q     +F+ +N++S  L+  +L   +++
Sbjct: 1   FIPIAENSGLIVQLGLFAMQRAAEDLFAWQEQFPKLDLFVSVNLSSTQLIRQDLINDVRS 60

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++S+   +P  +KL  +ESV+M NPE+S  +L RL+ +GI L+LDDFGT  S L+YL   
Sbjct: 61  VLSRIHLNPGSLKLELTESVLMENPEQSAYVLARLKAMGIGLSLDDFGTGYSSLAYLTRF 120

Query: 877 PFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           PFD +K + S + G   ++  +LRSI+ MA ++   ++ + +  E D  +L +MGC+Y+Q
Sbjct: 121 PFDIIKIDRSFVKGDQPQKTTLLRSIVSMAHDLGLAVVTEGVESETDALQLRQMGCEYVQ 180

Query: 937 DSHVASPLGFNSILKLLKERF 957
                 P   +   ++++E+ 
Sbjct: 181 SFMFGQPTSHDEATRMIREQL 201


>gi|260771631|ref|ZP_05880551.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
 gi|260613408|gb|EEX38607.1| sensory box/GGDEF family protein [Vibrio metschnikovii CIP 69.14]
          Length = 832

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 183/451 (40%), Gaps = 35/451 (7%)

Query: 515 IANDITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI 573
           +  D+T++ +    +L  +++ D  TG+PNR    +RL  +++           ++ + +
Sbjct: 396 MNRDLTQKIQDQASLLTASYRVDRRTGLPNRVVLRERLLQMVNGEH--------LLALKL 447

Query: 574 DKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP----DILARLSGNRFGIILISENNSLK 629
             + +IN+  G  VGD +LV LT    + L         L  +    +  +  ++ +  +
Sbjct: 448 TNFHQINEKYGYQVGDQLLVDLTGHFQDYLTEHLLGLSSLYAIGVGEWATVFSADRDEEE 507

Query: 630 IADFAIAMRKSIAM----PINLLEREITVTASIGFASWTSS---KITSSEMLKNAELAMY 682
           I        + +      P  L E +  V+ S+     +        + ++L  A  A  
Sbjct: 508 IHRLFSQFVEQLEHVNFEPYGLPEVD-YVSVSLCAGLVSRKEFPAEDADDLLLRAIEARR 566

Query: 683 HAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLE 739
           HA  R  +   + R+ +    R  R+     +  AV ++ + +   PI+     ++   E
Sbjct: 567 HAFQRNRHFCSATRLRAQDELRQKRLGWLSCVSRAVLDNNVLVYGQPIVHTHSHQLASYE 626

Query: 740 ALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILIN 799
            L++ +      I    F+ I E   +   ++  M++     +    +          IN
Sbjct: 627 CLVRIED-DGEIILPGRFLPIIEGSHLYTRLSRQMIKSTFDIMRDRHEAF-------SIN 678

Query: 800 IASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLT 859
           ++ +DL+       ++  +      PSR+ L   E+  + +  +   +    +++G+ + 
Sbjct: 679 LSPQDLMSERTLLRLEEAVKSLA-DPSRVGLEVLENEQIKDYGQMIEVCEHFKRLGVRII 737

Query: 860 LDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKD 917
           +DDFG+  S +  +  +    +K +GSL+    +   +  I + +I + + +    +A+ 
Sbjct: 738 VDDFGSGYSNIDEIIKLEPQVIKLDGSLICNIDQDIKQRKIAQQLIKLCQVLNAKTVAEF 797

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           ++ +   +    MG DY+Q  ++  P+    
Sbjct: 798 VHNQTVCQISEDMGVDYLQGFYLGQPVRLRQ 828


>gi|205359908|ref|ZP_02833284.2| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342057|gb|EDZ28821.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 516

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 242 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 301

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 302 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 359

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 360 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 418

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 419 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 478

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 479 QYCQGWHFAKALPPQEFISWLQQ 501


>gi|323190059|gb|EFZ75337.1| EAL domain protein [Escherichia coli RN587/1]
          Length = 528

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|207859417|ref|YP_002246068.1| hypothetical protein SEN4034 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206711220|emb|CAR35596.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 533

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|168466955|ref|ZP_02700803.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195630637|gb|EDX49249.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 533

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|83310513|ref|YP_420777.1| signal transduction protein [Magnetospirillum magneticum AMB-1]
 gi|82945354|dbj|BAE50218.1| Predicted signal transduction protein containing a membrane domain
           [Magnetospirillum magneticum AMB-1]
          Length = 587

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/561 (14%), Positives = 186/561 (33%), Gaps = 36/561 (6%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
              G    G+    E        + D++ + D     +       +++G  +  +     
Sbjct: 20  RRKGKGGAGLGQPQEAYVAFAFAAADLLMEADHAGRIIFAIGASMSLVGRPARLLAT--M 77

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                I   D+   R  L       R R      V         + +   P  +  G +L
Sbjct: 78  TLPDLIRPEDQSRARNALKRMAKGDRVRHVL-LHVHLPAGGSTPVALSGYPHPDHQGRLL 136

Query: 511 RYI---GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +   G     T +                TG+  R+ F      ++  SA D +    
Sbjct: 137 LVLTHSGTLMSPTVRN-------------PETGLLGREGFEALAGDLIKESAKDGDESYR 183

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           + ++D+ +  ++   +G     D +   T  + +        A L  +++G+I   E ++
Sbjct: 184 MTLLDLPELAELRSKVGAEATADFIARFTDYLKQCSVGGGAAADLGNSKYGLIHGPEVSA 243

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +I      + +S+           +++A     +     I++ E        +      
Sbjct: 244 AEIETAISGLAQSVMGS--------SLSADSTSLAIDGGGISAQEATSALIYTLNRFTTD 295

Query: 688 GGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
               +      +  +    +    ++   +   E  L + PI+ L    +   E L+++ 
Sbjct: 296 SDATIHELSAMARPTLSQTVAKMREVKQTIGRGEFQLYFQPIVDLWSNAVHHFECLVRFG 355

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                  S+  F   AE+  ++  ++L +  R    +         P +   +N++ + L
Sbjct: 356 DSGNSPYSTVVF---AEDTGLVGELDLAICARAIAFMRE--GVGAEPSLRFAVNLSGRSL 410

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
               +   +  +I        R+    +ES  + +   +  ++  +R  G  + +DDFG 
Sbjct: 411 SSPSMAARLLQMIHGASDLRGRLLFELTESSAISDLVAANAVIQEIRGRGHPVGIDDFGA 470

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             +   YL  +  D VK +GS +  +      +  LR+I  + + +    IA+ I  E  
Sbjct: 471 GAAAFHYLRGLKVDHVKIDGSYVRDAAAKGDSLPFLRAITQLCRELRVATIAEHIEDEAT 530

Query: 924 IKELTRMGCDYIQDSHVASPL 944
              L      Y Q  +   P+
Sbjct: 531 ANLLRVYNVRYGQGYYFGKPM 551


>gi|58581090|ref|YP_200106.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425684|gb|AAW74721.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 433

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 167 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 226

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A +S    SP+ 
Sbjct: 227 HALTQQVIDKAIAQLLDWRAEGFD--LSLALNLSPRLLGEDHFLEELCAKLSDNGLSPAD 284

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 285 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 343

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 344 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPEDWRLLRELGCDLAQGYLMASPMP 403

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 404 GPMLSEWWREH 414


>gi|284924155|emb|CBG37254.1| putative signal transduction protein [Escherichia coli 042]
          Length = 527

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+  +         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGVYLAT--HVDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|218676708|ref|YP_002395527.1| hypothetical protein VS_II0947 [Vibrio splendidus LGP32]
 gi|218324976|emb|CAV26813.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 532

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 131/264 (49%), Gaps = 7/264 (2%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              +  +  ++  L  A++N  L++   PI+     +IVG E+L++W+ P  GN+S + F
Sbjct: 255 KHKKQSQRSLEYSLSSALKNKHLHVHMQPIVNQSTNKIVGCESLLRWNDPIEGNVSPAIF 314

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE L +I+ +  F+L  +   + S ++       +I +NI+   + ++     + ++
Sbjct: 315 IPLAESLGLIEKLTYFVLHEVLTTLKSNQEVFASK--YISVNISRNVVSNSNFTNKVISI 372

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSR--LLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +      ++    +E     + +  +    L +L  +G+ + +DDFGT  + L ++  
Sbjct: 373 FKRHPEILKQVVFEVTEDGECSDADMVKIKDNLQKLSDLGVRIAIDDFGTGYAGLDFVRQ 432

Query: 876 IPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            PF  +K +   +   +++      +L S++ +++ +   +I + +  E  +K L+++G 
Sbjct: 433 FPFSILKIDRVFVKNISDESSFGIPLLESMLQLSRTLGMQVIVEGVEYESQLKILSKLGV 492

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           DYIQ  +   P+  +  + L+K++
Sbjct: 493 DYIQGFYFYKPMPISLAISLIKQQ 516


>gi|170680947|ref|YP_001746451.1| cyclic diguanylate phosphodiesterase domain-containing protein
           [Escherichia coli SMS-3-5]
 gi|170518665|gb|ACB16843.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli SMS-3-5]
          Length = 528

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|256111742|ref|ZP_05452721.1| EAL [Brucella melitensis bv. 3 str. Ether]
          Length = 594

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|218707683|ref|YP_002415202.1| putative signal transduction protein [Escherichia coli UMN026]
 gi|218434780|emb|CAR15713.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli UMN026]
          Length = 530

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 268 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 327

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 328 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 385

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 386 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 444

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 445 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 504

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 505 FFAKAMPPQVFMQWMEQ 521


>gi|331665731|ref|ZP_08366625.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA143]
 gi|331056782|gb|EGI28776.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA143]
          Length = 528

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|242279854|ref|YP_002991983.1| diguanylate phosphodiesterase [Desulfovibrio salexigens DSM 2638]
 gi|242122748|gb|ACS80444.1| diguanylate phosphodiesterase [Desulfovibrio salexigens DSM 2638]
          Length = 740

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 126/261 (48%), Gaps = 5/261 (1%)

Query: 705 VMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEE 763
             +  DL  A     +LY+V+ P I     EI+G EALI+W+HP +G IS    + +AE+
Sbjct: 467 RSLASDLVRALRAEEQLYVVFQPQIDDDAGEILGAEALIRWNHPAYGYISPEVVVALAED 526

Query: 764 LCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLY 823
           +  I  ++ F+L      +  W+++     +F+ +N       +  L + +   +     
Sbjct: 527 MNCIDELSYFVLRESCSQLAVWQERFGYH-LFVSVNFPPSLFKNKGLEDKVLGCLRSAGV 585

Query: 824 SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKF 883
            P  +++  +ESV M    R    L RLR++GI +++DDFG   + L YL  +P D VK 
Sbjct: 586 PPYCLEIEITESVAMSTSGRELQNLNRLRELGIRISIDDFGMGHTSLRYLRALPIDKVKI 645

Query: 884 NGSLMTG-STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
           + +L  G   +    I+ SI+ + +NIE  ++ + +     ++ L ++G    Q  + + 
Sbjct: 646 DRTLTFGSLNDVNRHIVTSILELCRNIEMKVVVEGVENAEQLRSLRKIGGTCFQGYYFSR 705

Query: 943 PLGFNSILKLLKERFPLVKNT 963
           P+     L+ + +     K +
Sbjct: 706 PVIGEECLQFMDDWN--TKRS 724


>gi|320088671|emb|CBY98429.1| Uncharacterized protein yjcC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 533

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFISWLQQ 518


>gi|293407794|ref|ZP_06651634.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472045|gb|EFF14527.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 528

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|224367202|ref|YP_002601365.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223689918|gb|ACN13201.1| signal transduction family protein (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 719

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 124/252 (49%), Gaps = 3/252 (1%)

Query: 707 IKEDLCLAVENS-ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
           +  DL  A++   +++LVY P + +    IVG EAL++W HP  G I     + +AE+  
Sbjct: 467 LAADLGRALDRDDQIFLVYQPQVDVDLGRIVGAEALLRWKHPTHGLIPPHITVALAEDTH 526

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  + + +L           +Q     I + +N++++   D  L E +  ++ KT    
Sbjct: 527 LISDLGMRVLSDACMHHSVLLNQGETDQI-LSVNLSAQQFEDEFLVEKVVEILRKTGVKT 585

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           + +K+  +ES+V+    ++  +L RLR++G+ + +DDFG   + L YL   P DTVK + 
Sbjct: 586 NMLKVEVTESMVLTPDVKTISILKRLREMGVRVAIDDFGMGHTSLRYLKEFPVDTVKIDR 645

Query: 886 SLM-TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           SL           I+ SI+ + + +   II + +  E  ++      C + Q    + P+
Sbjct: 646 SLTLESLDGINDHIVTSIVSLCEALGVQIIVEGVETEEQLERFREHRCSFFQGYFFSKPI 705

Query: 945 GFNSILKLLKER 956
              + ++L++ +
Sbjct: 706 SGEAYVELVRGQ 717


>gi|254508133|ref|ZP_05120259.1| ggdef family protein [Vibrio parahaemolyticus 16]
 gi|219548968|gb|EED25967.1| ggdef family protein [Vibrio parahaemolyticus 16]
          Length = 825

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/563 (15%), Positives = 215/563 (38%), Gaps = 40/563 (7%)

Query: 405 ERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM-HGPIRNWLPYIHINDRDN 463
           E            V   +  +  +          G ++  +    +       H  +   
Sbjct: 130 EFFQQLFENPHHGVVLLNSHKSMLACNTYFLDHTGYSARELLMKSVDTLNSDKHSEE--- 186

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
           F   + S V  + G       ++  D +     + ++ ++ + G  L Y+G   D+++  
Sbjct: 187 FYQSIWSDVDSK-GYWSGVVLIKQVDGKTIPQDLTLQRVTFA-GQ-LFYLGYYLDLSKNL 243

Query: 524 KSLEGIL----CNAFQDNLTGIPNRQSFLDRLT-TILDLSATDDNLRPTVMVIDIDKYKK 578
             +  I            LT +P    F   +    ++ S+   ++        + ++++
Sbjct: 244 YRVADIELGGVEL-----LTQLPTESQFTHMVAKRWINDSSEAISMVVAF----VPRFEQ 294

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL--ISENNSLKIADFAIA 636
             D        ++  +L+  +         +  +  N F   L     ++  ++      
Sbjct: 295 -KDDF------ELKSTLSEHLSRNRIAQ-QVGYIGNNHFVACLECPKTDSPGQVRIIHQT 346

Query: 637 MRKSIAMPINLLEREIT---VTASIGFASWTSSKITSSEMLKNAELAM--YHAKHRGGNH 691
           +R+  +       + I    +   +G +           ++ +A  A+       +G   
Sbjct: 347 IRRFFSTLNQSAGKAIHRAILKGKVGVSVLGHDTYNPKLLVSHAVQALLEQSNNSQGQIT 406

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
                +      R  ++E     +++  + + Y PI+ +   +IV  EAL ++  P    
Sbjct: 407 FYHGAIHKEVLRRKELEEWAAKLIKSQSVEVYYQPIVDVRTWDIVKFEALSRFKGPNGQM 466

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNEL 810
           +++ E + IAE+L ++  ++    ++   ++ + +++     + + IN +    L  +E+
Sbjct: 467 LNTQEMVTIAEDLDLVADLDWCAGKKALEELTAIQERFGA-KLGVTINRSLNTKLDVDEV 525

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
            +  ++LI +   +P  + +  +ES    +  R   L+  +R+ G+S+ +DDFGT  S  
Sbjct: 526 LQSAESLIYQYAKTPELVTIELTESAYFDSESRQSALIRSIRRKGVSIAIDDFGTGYSSF 585

Query: 871 SYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           SYL    FD +K +   +T       +  I++ I  +A  +   ++A+ +    +++ L 
Sbjct: 586 SYLSDSNFDLLKVDREFVTNIKMGSHQYFIVKMITELAHTLGVKVVAEGVETRHELEVLC 645

Query: 929 RMGCDYIQDSHVASPLGFNSILK 951
            +G D+IQ    + PL  N + K
Sbjct: 646 GLGVDFIQGYFFSKPLPLNELEK 668


>gi|261312965|ref|ZP_05952162.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           M163/99/10]
 gi|261301991|gb|EEY05488.1| diguanylate cyclase/phosphodiesterase [Brucella pinnipedialis
           M163/99/10]
          Length = 599

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 110/523 (21%), Positives = 204/523 (39%), Gaps = 32/523 (6%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMVRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L     R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSW 585


>gi|89094058|ref|ZP_01167002.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
 gi|89081732|gb|EAR60960.1| Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF)
           [Oceanospirillum sp. MED92]
          Length = 430

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 129/317 (40%), Gaps = 2/317 (0%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA 441
              ++ + +         +    E+  LA+    D +WDWDI    V  +P +  +LG  
Sbjct: 115 FFLSIARDISRRREQEAEVQGREEQIWLALNSCTDGLWDWDISSGHVYFSPQLKRMLGYG 174

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              M   +  W   +   D+      L+  +  +R R +  +R+R  +    W+      
Sbjct: 175 PDEMKPVVDTWKNNVFEEDQPMVLQALEEHIQGKRDRYEAVYRMRNRNGHMIWVHDLGSV 234

Query: 502 -MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
            +  S G+ +R  G+  DIT+ K+    +   A  D LT + NR+         L+ +  
Sbjct: 235 SLRTSEGEPIRVTGMVKDITDYKQQEFKLQELAAYDELTKLRNRRECTRIFDKQLNFAQR 294

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           +D    ++   D D +K IND  G   GD VL    + + E L+  D L R  G  F +I
Sbjct: 295 NDQP-LSLCFFDFDYFKSINDQYGHMAGDYVLKETAKFLTENLRVSDYLFRWGGEEFILI 353

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
             +               K   + ++   + I VT S G AS+     + SE++  A+ A
Sbjct: 354 SANTTRQEMQVLAENLRAKLANLLLDYDGQSIHVTGSFGIASYPQHGESQSELILAADSA 413

Query: 681 MYHAKHRGGNHVESFRV 697
           +Y AK  G N V  F+ 
Sbjct: 414 LYQAKSDGRNCVRLFQQ 430


>gi|325925014|ref|ZP_08186436.1| EAL domain-containing protein [Xanthomonas perforans 91-118]
 gi|325544526|gb|EGD15887.1| EAL domain-containing protein [Xanthomonas perforans 91-118]
          Length = 427

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A + +   SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWRAEGFD--LSLALNLSPRLLGEDHFLEELCAKLGENGLSPAN 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|300914048|ref|ZP_07131365.1| diguanylate phosphodiesterase [Thermoanaerobacter sp. X561]
 gi|300890733|gb|EFK85878.1| diguanylate phosphodiesterase [Thermoanaerobacter sp. X561]
          Length = 276

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 136/277 (49%), Gaps = 5/277 (1%)

Query: 681 MYHAKHRGGNHVESFRVSSFRSDR--VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           M+ AK  G +    F  +          +  ++  A+ N+E YL++ PI  L +  I  +
Sbjct: 1   MFEAKKLGKSKYVIFDKTIEDKIIEKTEMMVNIKKAMLNNEFYLLFQPIYDLRENRIKEV 60

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W + K+G+IS S F+ + EE  +IK   +F++E + + I  WR++     + + I
Sbjct: 61  EALARWRNNKYGDISPSRFVPVLEETGLIKEFGIFIIEDVFKQIKDWRNKGIE--LKVNI 118

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   L D+E       LISK     + I + F+E+ ++   E+    +    + GI +
Sbjct: 119 NVSPLQLRDDEFFFKFDELISKYNIPSNLIGIEFTETQILDIKEQKVNKIDEFLRRGIKI 178

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR-IAILRSIIPMAKNIETTIIAKD 917
           +LDDFG   S L  +   P  T+K + SL+    E +   +++ I+ ++K +   ++A+ 
Sbjct: 179 SLDDFGVGYSSLINMIEFPISTIKMDKSLIDRIDENKVKTLIKGILYISKEMNYEVVAEG 238

Query: 918 IYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +     +  L   GCD IQ  +++ P     I  + +
Sbjct: 239 VETGEQLSMLKEWGCDKIQGYYISRPKTSEEIELMFR 275


>gi|192361904|ref|YP_001983395.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190688069|gb|ACE85747.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 408

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 120/255 (47%), Gaps = 4/255 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+ N E+ L + P + +    + G+EAL +W HP  G IS   F+ +AE   +I A
Sbjct: 151 ELSHAITNHEITLAFQPKLTVQGLLLRGVEALARWKHPTKGIISPGIFIPLAERHGLIDA 210

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  ++L++       W+         +  N++   L D ++ + +  +      +P+ + 
Sbjct: 211 LTRYLLQKAFEHKRRWQQYGLR--FHLAFNLSPLSLADADMVDWLLKMTQDFGVAPADVT 268

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +E+ ++G    +   L RLR  G  + +DD+GT  +    L  +P   +K + SL+ 
Sbjct: 269 FEITENALLGELASAIRTLARLRLKGFHIAIDDYGTGFANAQQLSRVPATELKIDRSLVH 328

Query: 890 GST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 ++  IL S + +AKN+  T +A+ +  E D   L  +G D +Q  + + PL  +
Sbjct: 329 RVASRPQQYTILASTVTLAKNLNLTTVAEGVETEEDFLVLQELGVDLVQGYYFSKPLFAD 388

Query: 948 SILKLLKERFPLVKN 962
            +L  +K     ++ 
Sbjct: 389 DLLAWVKTGISEMRR 403


>gi|260858172|ref|YP_003232063.1| putative signal transduction protein [Escherichia coli O26:H11 str.
           11368]
 gi|257756821|dbj|BAI28323.1| predicted signal transduction protein [Escherichia coli O26:H11
           str. 11368]
          Length = 528

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGC 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|168231269|ref|ZP_02656327.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194470116|ref|ZP_03076100.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456480|gb|EDX45319.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205334388|gb|EDZ21152.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 533

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|309776618|ref|ZP_07671595.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915622|gb|EFP61385.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 416

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 160/402 (39%), Gaps = 14/402 (3%)

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
           +    ++ ++I K++ I    G     ++L  +   +  +L   D++     + F IIL 
Sbjct: 21  DQPYALIAMNIKKFRFIEYTYGTKRAAEILSLIMEAVKAVLNKDDVIVYHDDDNF-IILK 79

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREI--TVTASIGFASWTSSKITSSEMLKNAELA 680
           +     ++      +  ++    ++ +R+I   +  S G                 AE  
Sbjct: 80  AYTALEQLEKHW--LVNAVDAIFDIEDRDIFHNIYTSFGIFLMNDKSCPFEAAYDRAEF- 136

Query: 681 MYHAKHRGGNHVESFR-----VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
                    + V S+      + +       ++     A           P + L   +I
Sbjct: 137 CRKFSRSIKSRVFSYEIYKEEMKTTYMQYCQLEVFTAKAKTEERYLPYIQPKVSLKTRKI 196

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
           +G E L++    K G I  +E + I  +   ++ I+LF+ +++ +++   R       + 
Sbjct: 197 IGGEMLMRLPDGKGGMIPIAEVLPILNKNGFVRVIDLFLCDKVVKEMAQ-RQIKGKKNVR 255

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           I  NI++      EL E    +       P  +++ F E++ + + +  +  +    + G
Sbjct: 256 ISFNISNSFFYSQELLEDYCKITDTYHMDPKYLEMEFMETIKI-DADMLKEHIQNFHEKG 314

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM-TGSTEKRIAILRSIIPMAKNIETTII 914
            S  LDDFG   S  + L     DT+K +        T+   +I++ +I M ++    +I
Sbjct: 315 FSCALDDFGNGFSNYNLLCNSKLDTIKLDRCFFGHEMTKDTKSIVKMLITMIQSFGMHVI 374

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           A+ +  + D++ LT +GCD IQ  +   P+  +   +LL + 
Sbjct: 375 AEGVERKEDVEFLTSIGCDAIQGYYFYKPMPLDDFFQLLDKE 416


>gi|204927067|ref|ZP_03218269.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323732|gb|EDZ08927.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 533

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFISWLQQ 518


>gi|330874676|gb|EGH08825.1| sensory box/GGDEF domain/EAL domain-containing protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 701

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 177/373 (47%), Gaps = 9/373 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGNK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTNSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L         D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFGRDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +          A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQTTASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAEELCMI 767
            +F+ +AEE  +I
Sbjct: 689 DQFISVAEETGLI 701


>gi|218702726|ref|YP_002410355.1| putative signal transduction protein [Escherichia coli IAI39]
 gi|218372712|emb|CAR20588.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli IAI39]
          Length = 528

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|197364990|ref|YP_002144627.1| hypothetical protein SSPA3789 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197096467|emb|CAR62073.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 525

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 251 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 310

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 311 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 368

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 369 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 427

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 428 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 487

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 488 QYCQGWHFAKALPPQEFIAWLQQ 510


>gi|83591970|ref|YP_425722.1| diguanylate cyclase [Rhodospirillum rubrum ATCC 11170]
 gi|16519340|emb|CAC84418.1| hypothetical protein [Rhodospirillum rubrum]
 gi|83574884|gb|ABC21435.1| Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor
           domain [Rhodospirillum rubrum ATCC 11170]
          Length = 450

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 144/339 (42%), Gaps = 10/339 (2%)

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHV--LATGYFSQGIFSDGERQSLAVLGSGDI 417
                 +      GG      L     +     L     ++  F+  +R           
Sbjct: 117 GWFPATLQSLGPCGGFARQRRLWLLRDLSDAQELERLRETEERFNASQRF------GRIG 170

Query: 418 VWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRG 477
           VWDW+   + V  + ++  + G     +      ++  +H +D         + +     
Sbjct: 171 VWDWNTETNEVFWSEEVFPMFGFTPAEITPTYDLFIAMVHPDDFVALTDSERACLSG-TT 229

Query: 478 RLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDN 537
               E+RV   D   HW+      +  S+G   R +G+  ++TE+K++    L  A  D 
Sbjct: 230 LHDQEYRVIWRDGSVHWIRETADVLRESDGTPRRMVGVIREVTEEKEAQRQALRIAMLDP 289

Query: 538 LTGIPNRQSFLDRLTTILDLSATDD-NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT 596
           LTG+PNR +FL+RL   L         +   +  ID+D +K IND  G  +GD VL+++ 
Sbjct: 290 LTGLPNRATFLERLEADLGQVDETGVAVPLALAFIDLDDFKPINDTYGHLMGDRVLMTIA 349

Query: 597 RRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTA 656
           +R+ E ++  D++AR+ G+ F  +L    +  +    A  +  ++  P+++      V A
Sbjct: 350 KRLSEAVRPQDMVARVGGDEFVALLRGCRDGARARTVAARLLDAVTAPVSIDTVIHRVRA 409

Query: 657 SIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           SIG + + S   T  +++  A+ AMY AK  GG+ +   
Sbjct: 410 SIGISLYPSLVSTGDDLIATADQAMYVAKRAGGDPIRLH 448


>gi|204929216|ref|ZP_03220359.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204321760|gb|EDZ06959.1| cyclic diguanylate phosphodiesterase domain protein [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 729

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 149/426 (34%), Gaps = 24/426 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  D LT +PN ++    L           +   +V  + ++  + ++   
Sbjct: 317 WLNRQWHSQALTDPLTQLPNLRALEQFLLQ---------DTGQSVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL   + +  L G+    +L+        A     +      
Sbjct: 368 GMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE---LLLVLTGPETEARLQYMLNVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +              
Sbjct: 425 KIYWNNTGLDMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDDGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + + +             +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVMEALLQWLSAHPSA--EQGARFSVNLMPLTLLQKETASRIMQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQG 718

Query: 938 SHVASP 943
             +  P
Sbjct: 719 YLIGRP 724


>gi|229101302|ref|ZP_04232049.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
 gi|228682117|gb|EEL36247.1| Sensory box/GGDEF [Bacillus cereus Rock3-28]
          Length = 218

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 112/217 (51%), Gaps = 4/217 (1%)

Query: 738 LEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFIL 797
           +EALI+W++ + G +  ++F+ +AE    I  ++ ++++++ + I  W ++     + I 
Sbjct: 1   MEALIRWENKELGFVPPNQFIPLAERTGFIIKLDEWVVDQVCQQIREWLNKGYEV-VPIA 59

Query: 798 INIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGIS 857
           +NI+++      L E +   ++K       + +  +E  ++ + + S+ +L +L++  + 
Sbjct: 60  VNISARHFRSITLIEMITRALNKYNVPAHLLAIEVTEGALI-HKDISKRVLLQLKEQNLK 118

Query: 858 LTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIA 915
           + LDDFGT  S LSYL   P DT+K + S M G    E+   I  +II +A  +E  +IA
Sbjct: 119 IHLDDFGTGYSSLSYLKTYPIDTLKIDRSFMEGIHVDERDTNITAAIIHLAHTLELNVIA 178

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
           + +     I+ L     + +Q  + + PL    +  +
Sbjct: 179 EGVEKAEQIQFLKEKNVEIVQGYYYSRPLSKYDVENM 215


>gi|167947158|ref|ZP_02534232.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 279

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 140/280 (50%), Gaps = 9/280 (3%)

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK-----IADFAIAMRKSIAMPINL 647
           + +  R+   L+  D  ARL G+ F ++L             +   A  +R ++A P  +
Sbjct: 1   IKVASRLRHHLREEDTAARLGGDEFVVLLTDLEGDEARISSRVMQVADQVRMALANPFEI 60

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFR--SDRV 705
              E+ V+ SIG A + +      ++LK+A+ AMY AK RG N V+ F  S     ++R+
Sbjct: 61  AGHELHVSTSIGVAIYPADAKNVDDLLKHADTAMYRAKERGRNLVQFFLPSMQVAVNERL 120

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++ DL  A+ +S L L Y P +   D  + G EAL++W       +S +EF+ +AEE  
Sbjct: 121 ALEHDLRKAISSSGLLLYYQPQV-HRDGRVFGAEALLRWQREDGSMVSPAEFIPVAEETG 179

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPI-FILINIASKDLLDNELCEGMQALISKTLYS 824
           +I  I  ++LE   R++           +  I IN++ K     +    + A + +    
Sbjct: 180 LIYLIGGWVLEEACRNLAELSRMEAGCDLVSIAINVSPKQFRQRDFAGHVVATLKRFGVD 239

Query: 825 PSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFG 864
           P R++L  +ESV++ + + +   + +LR++G+  ++DDFG
Sbjct: 240 PGRLELEVTESVLVTDYQDTAEKMRQLRELGVRFSIDDFG 279


>gi|329297098|ref|ZP_08254434.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Plautia
           stali symbiont]
          Length = 566

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/435 (20%), Positives = 179/435 (41%), Gaps = 34/435 (7%)

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           E   C  F D +T +PNRQ  +  L  +  +          +  ID+ +  ++   +G+ 
Sbjct: 158 EAWHCAGFTDPVTALPNRQRLIRDLQRLASIGDRTPQRLILIDCIDMPRAYELARSMGMG 217

Query: 587 VGDDVLVSLTRRIGELLKFP--DILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
             + +L  +T  +   L+    DI+  ++  RF  IL  +N+ L  A  A  +    A  
Sbjct: 218 PVESLLKHVTTLLPLRLQPGADDIIYTVATGRFA-ILTMDNSPLTAASVAENLAGISAD- 275

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG-GNHVESFRVSSFRSD 703
                  + +T   G   +T +++ + E+L+ A  A++ A          S      R+ 
Sbjct: 276 -LGAGISVALTCFTGKVIFTPAELRAQEVLRRAVSALHEAIGNRVPAMSFSLVADQRRTQ 334

Query: 704 RVMIKEDLCLAVENSE-LYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
             ++  DL  A++  + L+L + P I L     VGLEAL++W HP+ G ++   F+ +AE
Sbjct: 335 DFLLMNDLAAALQQDQGLWLAFQPKICLNSGRPVGLEALVRWRHPQRGELAPDLFIPLAE 394

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           +  ++ A+  ++ ++    +   +       + + INI+S+D  D    + ++  + +  
Sbjct: 395 QTELLSALTSWLTDKAIARLKRLQHSPLQ--LPVTINISSRDFSDPGFADALETKMLQAR 452

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S + +   E+  + +   +   L  L+  G  ++LDDFGT  S + YL  +P D +K
Sbjct: 453 LPTSLLGIECLETEQIIDSPAALQGLEMLKLRGFGISLDDFGTGYSNIGYLRRMPLDVIK 512

Query: 883 FNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
            +        +                      + +     +  L   GCD  Q    A 
Sbjct: 513 LDR------AQHHY-------------------EGVENVDTVAALAEYGCDQAQGYFYAR 547

Query: 943 PLGFNSILKLLKERF 957
           PL  + +   L  + 
Sbjct: 548 PLPESELDAWLTRQL 562


>gi|237728143|ref|ZP_04558624.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226910154|gb|EEH96072.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 528

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 124/270 (45%), Gaps = 5/270 (1%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                R + +  +  L  A++  +L L Y PII + + + VG EAL++W   K   +S +
Sbjct: 260 MWWRTRQEYLSPRRLLKRAIKKRQLCLHYQPIIDIKNGQCVGAEALLRWPGCKGEVMSPT 319

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+  MI+ I  +++E +  D+  +      P + I IN+++ D   + L   + 
Sbjct: 320 EFIPLAEKEGMIERITDYVVEEVFNDLGYFLSA--HPQLSISINLSASDFHSSRLIALIN 377

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +   +  +IK+  +E   + +  +   ++   RK G  +  DDFGT  S L  L  
Sbjct: 378 DKNREYSVAAQQIKVEVTERGFI-DVHKMTPVIQAFRKAGYEVAFDDFGTGYSNLHNLSA 436

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + S ++  +    +  I   II MA+++    IA+ +  +  I+ L   G  
Sbjct: 437 LNVDILKIDKSFISTLSTNSTSHLIAEHIIEMAQSLHLKTIAEGVETKEQIEWLLERGVQ 496

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKNT 963
           Y Q  + A  L     +  ++    ++  +
Sbjct: 497 YCQGWYFAKALPPQEFMHWIQRSPAILTQS 526


>gi|114777666|ref|ZP_01452626.1| hypothetical protein SPV1_08361 [Mariprofundus ferrooxydans PV-1]
 gi|114551882|gb|EAU54416.1| hypothetical protein SPV1_08361 [Mariprofundus ferrooxydans PV-1]
          Length = 404

 Score =  259 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 4/247 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+E  EL   Y P I +  + +VG+EAL++W   + G +    F+ +AEE  +I A
Sbjct: 149 ELVAAIEAEELEPWYQPKIDIASKRVVGVEALVRWPSKEKGMVFPDAFIPVAEENGLIDA 208

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++++ A     W+ Q     + I IN++   L D    E + + + K    P+  +
Sbjct: 209 LTFLVIKKAADMQAHWQKQG--LSLKIAINVSMDSLYDLTFPERVVSYLEKHRVDPTGFQ 266

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES +M +      +L RLR    SL++DDFGT  S L+ L  +PFD +K + S + 
Sbjct: 267 LEVTESRLMDDLVGPLDILLRLRLKRFSLSIDDFGTGHSNLTQLRDLPFDEIKLDRSFVQ 326

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           G+ E   A  +L S + +AK ++  I+++ +    D + +  +GCD +Q   V+ PL  +
Sbjct: 327 GAAEDERAKSLLESSVDIAKKLDMEIVSEGVETLEDWQRVEMLGCDQVQGYFVSRPLPGD 386

Query: 948 SILKLLK 954
            I   ++
Sbjct: 387 DIPAWVE 393


>gi|300938204|ref|ZP_07152972.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 21-1]
 gi|300456794|gb|EFK20287.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 21-1]
          Length = 528

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIINIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|281181141|dbj|BAI57471.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 528

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++    N    ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHNDR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|23012699|ref|ZP_00052719.1| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 440

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 169/387 (43%), Gaps = 25/387 (6%)

Query: 411 VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS 470
           +    D V   D   + + + P    ++G ASGS     R     I+            +
Sbjct: 12  LDSIHDAVIIADAEGNPLRSNPAFEALMGFASGSGAEVSRLAASMIY-----------KA 60

Query: 471 FVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
                 GR +    V   D +     +    ++ S     R++ +           E   
Sbjct: 61  LSPGAGGRWKG--MVICPDGKERPFEVTAAAINPSADSADRFLCVVRP-----ALAEDSH 113

Query: 531 CN--AF-QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            +  +F  D LTG+PNR  F DR+   +  +         +M + +D++  +ND LG   
Sbjct: 114 GDGGSFGYDTLTGLPNRDLFADRIGQAVLQANRT-GASVALMTMGLDRFTLVNDALGHNA 172

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +LV + RR+   ++  D   RL G++F  ++++  ++      A     ++  P +L
Sbjct: 173 GDRLLVEVARRLKMCVRETDTAVRLDGDKFA-LVMAIADTDDSVIVAEKALHAVKEPFSL 231

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRV 705
              E+ VT SIG + +     +S++++K+AE A+++AK  G N  + F     R    R+
Sbjct: 232 DGEEVVVTFSIGISVYPLDADSSAQLVKHAENALHYAKVSGRNQYQFFSNDMNRKAKSRL 291

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  +  A+ N E  + Y P +      IVG EALI+W  P+ G +S  EF+ +AEE  
Sbjct: 292 ELEGRMRRALANDEFVVYYQPKVSADRNTIVGAEALIRWLDPERGMVSPGEFIPVAEESG 351

Query: 766 MIKAINLFMLERIARDIISWRDQANMP 792
            I+ I  ++L +  +    W++    P
Sbjct: 352 QIEPIGTWVLRQSCQQNRLWQEAGFDP 378


>gi|207722940|ref|YP_002253371.1| signal transduction protein ggdef domain (partial sequence c
           terminus) [Ralstonia solanacearum MolK2]
 gi|206588127|emb|CAQ18704.1| probable signal transduction protein ggdef domain (partial sequence
           c terminus) [Ralstonia solanacearum MolK2]
          Length = 315

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 133/313 (42%), Gaps = 3/313 (0%)

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
           +  + G+G   +DW +    V+     A +LG     +    ++W   +H  D       
Sbjct: 1   AYVLDGAGLGTFDWSMRVRHVSFNRRTAEMLGYEPEELSSDPQDWFAMVHPQDAVLSLRR 60

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDILRYIGIANDITEQKKSL 526
           +   +       + E R+R A+ Q+ W+  R R    +  G  +R  G   D+T+++  L
Sbjct: 61  IYRHLRGDADSFEVEQRLRGAEGQWVWVSARGRVTQRDGFGIAVRVSGTLQDVTKRRAML 120

Query: 527 EGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIA 586
           +     A  D LT +PN +   DRL   +  +    +L   V+ +D+D++K IND  G  
Sbjct: 121 DQAHHLALHDPLTDLPNARLLRDRLFVAIQAARRARSL-VAVVFVDLDRFKPINDEYGHG 179

Query: 587 VGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPIN 646
           VGD VL +   R+   L+  D +ARL G+ F  +L        +      + + +  P  
Sbjct: 180 VGDLVLKATAMRLRSGLRASDTVARLGGDEFVAVLTHCQTRDDVEQTVERLIEQLQAPFR 239

Query: 647 LLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
           +    +++  S G A + S    +  +++ A+ AMY  K  GG     F  S      + 
Sbjct: 240 VEGHVLSMGVSAGVALYPSDGRDAQGLIRCADAAMYEVKRAGG-SGFGFHASLNYERLMN 298

Query: 707 IKEDLCLAVENSE 719
           +++    A  + E
Sbjct: 299 MRQRGPDADGDGE 311


>gi|222035782|emb|CAP78527.1| Uncharacterized protein yjcC [Escherichia coli LF82]
 gi|312948647|gb|ADR29474.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli O83:H1 str. NRG 857C]
          Length = 528

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|168236962|ref|ZP_02662020.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736945|ref|YP_002117197.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712447|gb|ACF91668.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290013|gb|EDY29372.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615419|gb|EFY12339.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322618479|gb|EFY15368.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622109|gb|EFY18959.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627180|gb|EFY23972.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631140|gb|EFY27904.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637642|gb|EFY34343.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322642527|gb|EFY39127.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322643672|gb|EFY40226.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648256|gb|EFY44716.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322654668|gb|EFY50988.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322659628|gb|EFY55871.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662163|gb|EFY58379.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666091|gb|EFY62269.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672511|gb|EFY68622.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322675940|gb|EFY72011.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322680425|gb|EFY76463.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322684681|gb|EFY80685.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194641|gb|EFZ79832.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197125|gb|EFZ82266.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201757|gb|EFZ86821.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323206271|gb|EFZ91233.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323213282|gb|EFZ98084.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323215653|gb|EGA00397.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323222075|gb|EGA06461.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323227942|gb|EGA12096.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323229111|gb|EGA13240.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236279|gb|EGA20355.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323237601|gb|EGA21662.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323241733|gb|EGA25762.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323248120|gb|EGA32057.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323254550|gb|EGA38361.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323258390|gb|EGA42067.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323259670|gb|EGA43304.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265943|gb|EGA49439.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270385|gb|EGA53833.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 533

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFISWLQQ 518


>gi|295097961|emb|CBK87051.1| FOG: EAL domain [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 746

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 170/438 (38%), Gaps = 22/438 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         AF D +  +PN ++    L           +    + ++ + + + +
Sbjct: 317 TRQRAINIRSRSQAFLDPVVHMPNLRALSRELA---------SHPWSALCLLRVPELEVL 367

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L + I   L+  + +  L+G    + L +E++  +I      +++
Sbjct: 368 GRNYGVMLRIQYKQQLAQWINGTLQPNERVYHLTGYDMAVRLEAESHQQRIETLDEHIKQ 427

Query: 640 SIAMPINLLEREIT--VTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESF 695
            +          +   V  S  +     + +     E+   A+L++            + 
Sbjct: 428 FV---FIWDGMPVQPQVGVSYCYVRSPVNHLYLVLGELGIVADLSLSTNHPENLQQRGAV 484

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +     D+V +   L  A+E     L+  P+  L  +     E L++        I   
Sbjct: 485 HLQRSLKDKVAMMSRLQAALEQDAFTLLVQPVRGLRGD--CYHEVLLRMRDDNGALIFPE 542

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ IA+E  +   ++L++LER    +   R +         IN+A       +    + 
Sbjct: 543 QFLPIAQEFGLSSRVDLWVLERTLSFLAQHRQRLPGQ--RFAINLAPSTAYRAQFPLEVS 600

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
            L++K      ++    +ES   G+ + +   L +L+K+GI + +DDFGT  +  + L  
Sbjct: 601 RLLAKYAVEAWQLIFEVTESSAFGHADLAASTLRKLQKMGIRIAIDDFGTGYASYARLKS 660

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K +G  +           I+ SI  +A+  +  ++A+ +  E     +  +G D
Sbjct: 661 VDADILKIDGGFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVETEEIRSAVHALGID 720

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q   +  P   +++L 
Sbjct: 721 YVQGYLIGLPAELDTLLN 738


>gi|114320275|ref|YP_741958.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226669|gb|ABI56468.1| diguanylate cyclase with PAS/PAC sensor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 494

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 136/330 (41%), Gaps = 9/330 (2%)

Query: 377 LIVILIGFTVIQHVLATGY--FSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDI 434
            +  ++     Q  + +G     + +F   ER  + +   GD V   D +       P  
Sbjct: 152 WLPAILRHVARQKAVESGRQVAEEALFQKAERARVTLESIGDAVLVTDSLGYVTYLNPVA 211

Query: 435 ATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV----GYRRGRLQYEFRVRAADN 490
            T+ G +           +  I   D       L+  V      R   L     +   D 
Sbjct: 212 ETLTGWSRDEASAQPLATVFKIV--DGAAGEFALNPAVTAMNEDRTVGLVANCILLQRDG 269

Query: 491 QFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDR 550
               +     P+ + NG +   + +  D++  +   + +   A  D+LTG+PNR    +R
Sbjct: 270 GSIGIEDSAAPIHDRNGRVTGAVIVFRDVSLSRSVTQKMAYLAHHDSLTGLPNRALLAER 329

Query: 551 LTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
           L   L  +   D  +  ++ +D+D +K+IND +G  +GD  L     R+ + ++  D ++
Sbjct: 330 LGRALGAARRHDR-QLALLFLDLDHFKRINDTMGHDIGDHALRGTAYRLSDCVRETDTVS 388

Query: 611 RLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS 670
           RL G+ F ++L   ++    A  A  +  +I  P+++ +  + V+ASIG + +      +
Sbjct: 389 RLGGDEFVVLLEEIDSPDDAAHIAEKVLAAITAPLHVGDHTLQVSASIGISIFPQHGADA 448

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSF 700
             + + A+ AMY AK +G    + F+    
Sbjct: 449 ETLHQRADAAMYQAKAKGRAGYQFFQADPE 478


>gi|77456359|ref|YP_345864.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77380362|gb|ABA71875.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
          Length = 648

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 173/435 (39%), Gaps = 22/435 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ +  E +   ++QDNLTG+ NR+ F  +L   +       +    ++++ +     +N
Sbjct: 224 EQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQASSGY--LLLLRVKDLAGLN 281

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
             LG    D++L ++  ++           +++ R+ G  F ++        +    A +
Sbjct: 282 QRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAPGMT-REEALQLAQS 340

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +++        ++   ASIG A + +   +   +L   + A+  A+ +G  +     
Sbjct: 341 LDSALSSLYATGATDVAAVASIGLAPF-AHGDSPQAVLSLGDQALAQAEGQGEQNWACLD 399

Query: 697 VSSFRS---DRVMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNI 752
            S       D       L  A+      L + P++   D + ++  + L +    +   I
Sbjct: 400 QSLVADVGDDHHAWHRLLDQALNQRRFELFFQPVVAAQDTQLVLHYKVLSRLLDEQGQTI 459

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+   E       ++  MLER+   +    +        + +N++S  L D +   
Sbjct: 460 PAGRFLPWLERFGWTARLDRLMLERVLEQMAGHEES-------LALNLSSATLADPQALN 512

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++       +R+ L   E  +         L  RLR++G SL+L  FG + S++  
Sbjct: 513 KVFEILRAHSNLGARLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGN 571

Query: 873 LGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +    +K +GS +    +   +   + +I   A +I+  +IA+ +  E ++  +  M
Sbjct: 572 LARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREM 631

Query: 931 GCDYIQDSHVASPLG 945
           G   +Q      P  
Sbjct: 632 GLYGVQGQLFGEPKP 646


>gi|325916559|ref|ZP_08178825.1| EAL domain-containing protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325537232|gb|EGD08962.1| EAL domain-containing protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 427

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLRDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++   L + +  E +   ++    +P  
Sbjct: 221 HALTQQVIDKAIAQLVDWRAEGLQ--LTLALNLSPNLLGEEDFLEHLCGKLADNGLTPGD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VQAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKERFPLVKN 962
              + +  +E    +  
Sbjct: 398 GPMLSEWWREHAARIAR 414


>gi|322833973|ref|YP_004214000.1| diguanylate cyclase/phosphodiesterase [Rahnella sp. Y9602]
 gi|321169174|gb|ADW74873.1| diguanylate cyclase/phosphodiesterase [Rahnella sp. Y9602]
          Length = 746

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 172/438 (39%), Gaps = 20/438 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           + Q+  ++     A QD + G+PN ++F   L +           R  +  I +     +
Sbjct: 321 SRQRLLMKKSSAAALQDPVFGLPNLRAFNRDLASY---------PRSMLCFIRVSDMDVL 371

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
           +   G+ +       L   +   L+  + +  L G    + L  E++  K+ +    +  
Sbjct: 372 SRNYGMQLRIQFKQQLAHGLKPYLQPGERVYHLPGYDLVLRLNCEDSDKKLQNLHDYLED 431

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRV 697
              +   L      +  S          +     E+   AE+++   +     +  S +V
Sbjct: 432 FRLIWNGLPLHP-NIGLSYCTVYSPVEHLPILLGELSGIAEVSLTTGQPESNKNDHS-QV 489

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH-PKWGNISSSE 756
                ++V +   +  A+++    L+  PI  +  +     E L++     +   I+  +
Sbjct: 490 QLEIREKVDMLHKIQRALDDDRFVLMAQPIFGVRGDS--YHEILLRLSDSAEGTLITPDK 547

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +  E  +   +++++L+     I   +++  +P +   +N     L         + 
Sbjct: 548 FLPVVHEFGLSYQLDMWVLKHTLMFIN--QNRVRLPSLRFAVNFTPSTLCRPTFSRDFKT 605

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L+ +    P +I L  +ES ++ N + + L +  LR  G  + +DDFGT  +    L  I
Sbjct: 606 LMLEYEVEPFQIVLEVTESHLLQNMKYADLAMRELRSYGCRIAIDDFGTGYASYGRLKAI 665

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +GS +           I++SI  +A+    +I+A+ +  E     L  +G DY
Sbjct: 666 QADILKIDGSFVRNMLTDSLDAYIVQSICQVARMKHLSIVAEYVETEEQKIALHELGVDY 725

Query: 935 IQDSHVASPLGFNSILKL 952
           +Q   V  P   N +L+ 
Sbjct: 726 MQGYLVGKPQPLNKLLEF 743


>gi|256157958|ref|ZP_05455876.1| EAL [Brucella ceti M490/95/1]
 gi|256253083|ref|ZP_05458619.1| EAL [Brucella ceti B1/94]
 gi|265996469|ref|ZP_06109026.1| EAL domain-containing protein [Brucella ceti M490/95/1]
 gi|262550766|gb|EEZ06927.1| EAL domain-containing protein [Brucella ceti M490/95/1]
          Length = 594

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   +I  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKVISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|117626342|ref|YP_859665.1| signal transduction protein YjcC [Escherichia coli APEC O1]
 gi|218561144|ref|YP_002394057.1| signal transduction protein (EAL domain containing protein)
           [Escherichia coli S88]
 gi|218692351|ref|YP_002400563.1| putative signal transduction protein [Escherichia coli ED1a]
 gi|237703635|ref|ZP_04534116.1| signal transduction protein YjcC [Escherichia sp. 3_2_53FAA]
 gi|331660638|ref|ZP_08361570.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA206]
 gi|115515466|gb|ABJ03541.1| YjcC, predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli APEC O1]
 gi|218367913|emb|CAR05710.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli S88]
 gi|218429915|emb|CAR10891.2| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli ED1a]
 gi|226901547|gb|EEH87806.1| signal transduction protein YjcC [Escherichia sp. 3_2_53FAA]
 gi|294490146|gb|ADE88902.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli IHE3034]
 gi|307629124|gb|ADN73428.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli UM146]
 gi|315287925|gb|EFU47327.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 110-3]
 gi|315297498|gb|EFU56777.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 16-3]
 gi|323950381|gb|EGB46262.1| EAL domain-containing protein [Escherichia coli H252]
 gi|323954463|gb|EGB50247.1| EAL domain-containing protein [Escherichia coli H263]
 gi|331051680|gb|EGI23719.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli TA206]
          Length = 528

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|327398731|ref|YP_004339600.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Hippea maritima DSM 10411]
 gi|327181360|gb|AEA33541.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Hippea maritima DSM 10411]
          Length = 663

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/611 (15%), Positives = 203/611 (33%), Gaps = 60/611 (9%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGE---RQ 407
            I    + T+ L   I        +  I I      +  VL      +      E   + 
Sbjct: 93  LIITAFSNTEYLMESIKIGVYDYIIKPIDIDQLMESVYRVLEKTILRKERDRALELLNQY 152

Query: 408 SLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTI 467
              +  S   V   D                G +   + G   + +   H +        
Sbjct: 153 KQIIDESFT-VTKTDPKGIITYANEKFCQSSGYSKDELIGKPHSIVR--HPDMPKAAFEN 209

Query: 468 LDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
           L   +  ++   +   + +  D +  +    I P+ +   +I+ YI +  ++T+      
Sbjct: 210 LWKVIQSKK-IWKGLVKNKTKDGKASYFKAHIAPILDEKKNIIEYIAVRENVTDLINP-- 266

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
                           R+   D++  +           P +++  I+ Y+ +  +    +
Sbjct: 267 ----------------RKVLQDKINEL---------KNPVLVLCKIENYEDLETLYSEKM 301

Query: 588 GDDVLVSLTRRIGELLKFP---DILARLSGNRFGIILISENNSLKIADFAIAMR----KS 640
            + +     ++  +++      D    L    F  I   + +   I  F   +R    K 
Sbjct: 302 LEQLQDKFMKKAKKIMPKDFLFDFTFELGEGEFAFIKDYKISDENINYFLNILRSFQEKI 361

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG----GNHVESFR 696
              PI + + E  +   I F            M KNA L +  A+H             +
Sbjct: 362 RNTPIKVGQYEYEIELLISFT------QEKDHMYKNASLCIKKAEHEKLDIVKADDLYQK 415

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +     + + +   +  A++++ +   Y PI+     +I   E+L++        +S   
Sbjct: 416 MQKKAEENIRVLRIIKDAIKHNRITSYYQPILNNKTGKIEKYESLVRLIDSNGNILSPYI 475

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ IA+     K I   ++E+  + I     +       I IN++S D+ D    E +  
Sbjct: 476 FLNIAKIGKYYKQITQIVIEKTLKMIEKTGKE-------ISINLSSLDIEDKTTRETLIV 528

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            +         + +   E   +      +  +  ++ +G  + +DDFG+  S  S +   
Sbjct: 529 ELRNNPTIAKNLVIELLEDESIKYEHLVKNFIKNMKLVGAKIAIDDFGSGYSNFSRIIEY 588

Query: 877 PFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + SL+      +  + I+ +I   +       IA+ +  E   + +  +G DY
Sbjct: 589 EPDYIKIDASLIKNIKNNKSNVNIIEAIKMFSDRQGYKTIAEFVADEEIFEIVKSLGIDY 648

Query: 935 IQDSHVASPLG 945
            Q  ++  P  
Sbjct: 649 SQGYYIGKPEP 659


>gi|262172889|ref|ZP_06040567.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
 gi|261893965|gb|EEY39951.1| sensory box/GGDEF family protein [Vibrio mimicus MB-451]
          Length = 765

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/509 (17%), Positives = 190/509 (37%), Gaps = 38/509 (7%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H   +        +F+  R G L+    +  A    + + +   P+ N       
Sbjct: 274 WGELLHHQGQQQVMHHSMTFLALREGELRD---IELAPLPSYPVGMT-SPLFNLIRHAFH 329

Query: 512 YIGIANDITEQKKSLEGILCNAFQ--DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            + +  D   Q+   +  L  A    D  TG+PNR    +RL    +           ++
Sbjct: 330 DLDVMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLERFAENEH--------LV 381

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISEN 625
            I +  + +IN+  G  VGD +L  L+ +    L         L  +    +  +  S  
Sbjct: 382 AIKVTNFNQINEKYGYPVGDKLLCDLSEQFQAYLDQKLAGHSSLYAIGVGEWATVFYSRV 441

Query: 626 NSLKIADFAIAMRKSIAM----PINLLERE-ITVTASIGFASWTS-SKITSSEMLKNAEL 679
           +   I        + +      P  L   + ++++   G  S    S+ T  ++L  A  
Sbjct: 442 DEQCIHSHFYQFVEQLEHVNFEPCGLPNLDYLSISLCAGLVSHRDFSEHTPDDLLLRAIE 501

Query: 680 AMYHAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           A  +A +   +   + R+      R +R+     +  AV   ++ +   PI       + 
Sbjct: 502 ARRYAFNNNRHFCNASRLKLQETVRQERLNWLSRVSRAVLRDDVVVYAQPICEARSHVVA 561

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
             E L++ +  +   I    F+ I  +  +   ++  M+      +    +         
Sbjct: 562 SYECLVRIED-EGEIILPGHFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAF------- 613

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +N++ +DL+     + ++A I      PSR+ L   ES  + +  R   +    R +G 
Sbjct: 614 SLNLSPQDLMSERTLQHLEAAIKSVA-DPSRVGLEVLESEQIKDYGRMIEVCNHFRSLGA 672

Query: 857 SLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTII 914
           ++ +DDFG+  S +  +  +    +K +GSL+    +   +  I   ++ + + +    +
Sbjct: 673 TIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTV 732

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           A+ ++ +   +    MG DY+Q   +  P
Sbjct: 733 AEFVHNQTVCRISEDMGVDYLQGYFLGRP 761


>gi|324007762|gb|EGB76981.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 57-2]
          Length = 517

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 120/255 (47%), Gaps = 5/255 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E ++L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKNQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKHGVRYCQGW 501

Query: 939 HVASPLGFNSILKLL 953
             A  +     ++ +
Sbjct: 502 FFAKAMPPQVFMQWM 516


>gi|296274534|ref|YP_003657165.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
 gi|296098708|gb|ADG94658.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arcobacter nitrofigilis DSM
           7299]
          Length = 668

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 185/428 (43%), Gaps = 32/428 (7%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           + D +T + N+ +   R+  +       ++    + +I++D   K+  + G  +GD++L 
Sbjct: 261 YIDQITKLKNKFALYKRINEL-------EHCNLMLNIINLDDLGKVTKMYGYKMGDEILK 313

Query: 594 SLTRRIGELLKFPD------ILARLSGNRFGIILISEN--NSLKIADFAIAMRKSIAM-P 644
            ++++I ++++          L +L  ++F +I++S+N   + ++   A  +   +    
Sbjct: 314 IVSKKIIQIIQIEQNDKISFELYQLESDKFALIVLSQNNIETEELNLIANNLITKLERGS 373

Query: 645 INLLER-EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD 703
             + +   + ++ ++G A      I +  ++   ++A+   K     + E   +    + 
Sbjct: 374 FEIEDNLSLDMSFTLGIAYKEEEDILTEALIAK-DVAI-ELKKDFVFYNEITGIKDIFAK 431

Query: 704 RVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDH-PKWGNISSSEFMLIAE 762
            + +++ +  A +   +   + PI+   D+ IV  EAL +     +   ++   F+   +
Sbjct: 432 NLQLQKKIKKAFDEDRIIPYFQPIVD-KDKNIVKYEALARIIDTEENRVLTPFFFLDQVK 490

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
                      ++E+  +     + +       I IN++ +D+ + E+   ++  + K  
Sbjct: 491 ASKNYSKFTKTIIEKSLKCTSILQKE-------ISINLSFEDISNPEIILFLEEKLLKY- 542

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
              S I +   ES  + + E++      ++  G  + +DDFG   S   Y   +P D VK
Sbjct: 543 --SSVITIELLESEGLKDIEKTISFCNLMKDYGAKIAIDDFGAGYSNFEYFFSLPIDKVK 600

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +GSL+    E K   ++ +I+   K ++  ++A+ +  E   + L  +G D+ Q  + +
Sbjct: 601 IDGSLIKKVNEYKGYVLVEAIVNFCKKLDIKVVAEFVEDEKTFETLKNLGIDWFQGYYFS 660

Query: 942 SPLGFNSI 949
            P     +
Sbjct: 661 EPKPIEEL 668


>gi|289667195|ref|ZP_06488270.1| response regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 427

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 123/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ W  +     + + +N++ + L ++   E + A +S    SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWHAEGFD--LSLALNLSPRLLGEDHFLEELCAKLSDNGLSPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|257461082|ref|ZP_05626180.1| fused pas, ggdef domain sensor protein and response regulator
           [Campylobacter gracilis RM3268]
 gi|257441456|gb|EEV16601.1| fused pas, ggdef domain sensor protein and response regulator
           [Campylobacter gracilis RM3268]
          Length = 806

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/660 (12%), Positives = 229/660 (34%), Gaps = 62/660 (9%)

Query: 321 YYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVI 380
                I    ++ +ER  +++   + +                 +     +   ++   +
Sbjct: 176 AAFIGIARQILRNFERQNIIVSDNLSLLNERFASLRERFSYASEEFYGSFMQMTMLYTAV 235

Query: 381 LIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL 440
            + F ++ +++ +                    +G+ +   D     +       ++ G 
Sbjct: 236 FLSFLLLTYIINSDALRSK--RALAPYHALCEQAGEAIVLADQSFKILYANKSALSLSGY 293

Query: 441 ASGSMHGPIRNWLPYIHINDRD-NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
               + G   + L  +   D+      +++            + R+   + +   + +R+
Sbjct: 294 EQSELQG---SDLGVLMPKDKGIELPAMVNKGAK--------DTRLLRKNGELADVSLRL 342

Query: 500 RPMSNSNGDILRYIGIANDITEQK-------KSLEGILCNAFQDNLTGIPNRQSFLDRLT 552
             ++ ++   L  +  A+DI E++        + E +    + D+LTG  N  +  + + 
Sbjct: 343 SNIAAASKPPLYAL-YAHDIGEREIMKLALASAKESLNNQVYIDHLTGQGNEAALYELIN 401

Query: 553 TILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI---L 609
                           + I I  +  +         +++L S  R +   ++  +I   +
Sbjct: 402 AE---------KTGVAIYITIVNFANLRLFYKAETTNEILRSFARTLAMCIESHEIKASI 452

Query: 610 ARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER-EITVTASIGFASWTSSKI 668
            R+  + F +     N +  +          +             +  ++G +       
Sbjct: 453 FRIQSDEFCLFYEGLNVARDVEIINKYFTDKVFNLHTTEGFASAPLNITMGVSERADVAG 512

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM---IKEDLCLAVENSELYLVYH 725
            ++ + + A +AMY A+ +  +     R ++     +    +   +  A++ ++++++  
Sbjct: 513 GANRVFQ-AVMAMYEAQSKNEHVGFYSRPNAIEEKYLQNQIMINTIQNAIKKNQVFVLVQ 571

Query: 726 PIIRLMDEEIVG--------------LEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
           PI  +   +  G               E LI+            EF+ IA++  +   + 
Sbjct: 572 PIFDITHRDPSGNTYGTEGGDYVPLVYEILIRLIDRSGKTRCPGEFIDIAKQTSLYIPLT 631

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             ++    R +  +            IN++  D+ +  + E ++  ++ +  + S + + 
Sbjct: 632 QVVINEAFRLLDRFA------GTCFSINLSYFDIANEGIKELLERKLASSP-NASNLFIE 684

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             ES    + E  R  +   +  G  + +DDFG+  S    +  +  D +K +G+L+   
Sbjct: 685 ILESEEFDDYESLRSFIAVAKNYGCKVAIDDFGSGYSNYYRILTLDVDYIKIDGALIKNI 744

Query: 892 --TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              +   AI+ +I   A+  +  +IA+ +        L  MG  Y+Q    + P+  + I
Sbjct: 745 ANDKNSRAIVETIANFARKQDYELIAEYVENHEISIILEEMGIKYMQGYFYSKPMEPSRI 804


>gi|240143660|ref|ZP_04742261.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
 gi|257204336|gb|EEV02621.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Roseburia intestinalis L1-82]
          Length = 646

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 171/436 (39%), Gaps = 15/436 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +     +A+ D+ TG  + Q+FL ++  + + S          +V+ I +   I  +LG
Sbjct: 210 YMAMQNPSAYIDSETGTSDEQAFLIQMKNVTEQSGKK-----VFLVVHIRQMHHIEMLLG 264

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                 +L  +   +   L     ++R + + F I+L    +  K       ++K     
Sbjct: 265 YENSRRLLAEVGHYLTA-LCGKFCVSRNAEDTFTILL----DEGKEEHIKGQIKKRFEQD 319

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            ++    I++   +    +     + +E        +  A++ G         +  +   
Sbjct: 320 FHVSGNSISLNEVMITLHYPRDFCSLAEYRALYGYLLEAAQNSGKQVFFEVDEAVKKDYY 379

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +++ +  A+  +   + Y PI  L ++ +V LEAL++    K G I   EF+ +AE
Sbjct: 380 RRNKVEQAVDRAITENRFEVYYQPIYSLKEKCVVSLEALVRLKDEKLGAIPPDEFIPLAE 439

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKT 821
           +   I  I+  +LE   R +           I  I +NIA+   L+  L E +  ++ + 
Sbjct: 440 QNGTITQISEIVLEECCRFLAKHVLPNPSLGIRTIHVNIAAAQCLNRNLKESILPVLERY 499

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 I L  +E   +  P+     +    KIG+   +DD+G+  S  SYL   PF  +
Sbjct: 500 HVPTHMITLELTERTAIEAPKLMLWHMQEFGKIGMGFAMDDYGSGNSNCSYLIRFPFREI 559

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + ++            ++ + I   + +   +I + +  +     L  +G D IQ  +
Sbjct: 560 KIDKNMTWSYFENPTAKIVIENEIKTIQKLGLPLIMEGVEKKEQSDALEALGVDMIQGYY 619

Query: 940 VASPLGFNSILKLLKE 955
              P+     L+ ++ 
Sbjct: 620 YGKPMPETECLRYIRR 635


>gi|86739093|ref|YP_479493.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
 gi|86565955|gb|ABD09764.1| diguanylate cyclase/phosphodiesterase [Frankia sp. CcI3]
          Length = 1021

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/462 (22%), Positives = 174/462 (37%), Gaps = 43/462 (9%)

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD---DNLRPTVMVIDID 574
            D   +      +   A  D LT + NR     RL   L     D   D+ +  ++  D+D
Sbjct: 567  DNAHRYTRERQLHHQALHDPLTDLANRTLLTARLQRGLARRLHDNTQDDTQLALLFCDLD 626

Query: 575  KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
             +K +ND  G A GDD+L     R+    +  D +AR+SG+ F ++L      +      
Sbjct: 627  DFKSVNDRFGHAAGDDLLRVTAGRLTSCARSTDTVARISGDEFAVLLEG--GCVDPESIG 684

Query: 635  IAMRKSIAMPINLLEREITVTASIGFASW-TSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
              + +++ +P+ L     T  ASIG       ++ T+  +LK A+ AMY AK RG   + 
Sbjct: 685  RRILETLRVPLVLAGTVHTTQASIGLVVVDPGTQATAESVLKQADSAMYAAKRRGKGTLV 744

Query: 694  SFRVS-----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +R       +  + R  +   +        L + Y PII L     VG+EA ++WD P 
Sbjct: 745  VYRPELCPASAEDALRTSLTHAVRGEDGGGTLNVSYQPIIELHTGRTVGVEAALRWDDPS 804

Query: 749  WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              ++      L A++  +  A+   +L+R  RD+  +R     P + + I ++  D  D 
Sbjct: 805  SRSVPHHRLTLTAQQTGLAPALEHILLDRACRDLGRYRS-TGHPEVALHIPVSILDAADA 863

Query: 809  ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL-----DDF 863
                 +   ++     P  + L  +        + +   L  L   GI L +     +D 
Sbjct: 864  RFTTEVVNALTVHHLPPDALVLRVA-GATHHTDQAALRALRGLAARGIRLAITYPDAEDL 922

Query: 864  GTKCSLLSYLGYIPFDTVKFNG--------SLMTGSTEK--------RIAILRSIIPMAK 907
                     L  +P   +  +         SL  G T          R A L +I    +
Sbjct: 923  -----SFDPLLPLPVQIIVLDAAATRHLTESLTDGRTPGEEENDGTLRTAFLATI----R 973

Query: 908  NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +  +++   I        L   GC   Q S    P     I
Sbjct: 974  GLGISLLGTGIADAKQAATLAHSGCGLGQGSLFGGPAPLADI 1015


>gi|325924552|ref|ZP_08186067.1| EAL domain-containing protein [Xanthomonas gardneri ATCC 19865]
 gi|325544956|gb|EGD16295.1| EAL domain-containing protein [Xanthomonas gardneri ATCC 19865]
          Length = 436

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 122/251 (48%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 170 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 229

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++   L + +  E + A +S    SP+ 
Sbjct: 230 HALTQQVIDKAIAQLVDWRAEGFQ--LTLALNLSPNLLSEQDFLEQLCAKLSDNGLSPAD 287

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 288 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 346

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   + SP+ 
Sbjct: 347 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPEDWRLLRELGCDLAQGYLMGSPMP 406

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 407 GPMLSEWWREH 417


>gi|319957371|ref|YP_004168634.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419775|gb|ADV46885.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nitratifractor salsuginis DSM 16511]
          Length = 542

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 169/448 (37%), Gaps = 32/448 (7%)

Query: 515 IANDITEQKKSLEGILCNAFQ-------DNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +   +  +K          +        D LT +  R + +  L    D           
Sbjct: 111 VLKPLDAKKLLEAMEQSMLYHELRSLCRDPLTNLKTRNALIRDLEKSGDNR--------- 161

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           ++++ I+++  I D+ G  +    LV+LT++  +       + R+  +RF +    + + 
Sbjct: 162 LVLVGIEEFSHIQDLYGEEISTKTLVALTQKFHKFFDDRYEIYRVGFDRFVLW---DRHP 218

Query: 628 LKIADFAIAMRKSIAMPINLLEREIT-VTASIGFASWTSSKITSSEML--KNA-ELAMYH 683
            +  +      ++     N     +  +   +      +       +   + A   AM  
Sbjct: 219 ERAVETVYPALEAFEKECNKQGVSVAGIPIHLILVFALAHSNDGHTLYYTQYALRKAMKS 278

Query: 684 AKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                  + E  + S      +    +L  A E+ +    Y PI+    +EI   EALI+
Sbjct: 279 HLKFIVYNPEDDKDSIQHKKNIYWTLELQRAEESGKFVPFYQPIVDTKTQEIDKYEALIR 338

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           +      +   + F+ IA++  +   I   +L  +   + +         + + +NI+  
Sbjct: 339 YVDETGKHELPAAFLDIAKKSHLYSIITRVVLRHVIETVRT-------KKVRVSVNISYI 391

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           DL++ +    ++ L+ +       I     ES  + N +     +  +R+ G  + +DDF
Sbjct: 392 DLVNQDSLNDIETLLEENPDEAKLIDFEILESEKIDNYDLMGNFIEAVRRYGCRVGIDDF 451

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   S  S L  +  D VK +G L+ G     ++  I+ +I    K +    +A+ +  E
Sbjct: 452 GAGYSNFSILEGLHVDFVKIDGLLIQGIHRSHRQELIVEAIYEFCKKLGIKTVAEMVSCE 511

Query: 922 IDIKELTRMGCDYIQDSHVASPLGFNSI 949
            +   + R+G D +Q  +++  +  + I
Sbjct: 512 EEYAVIKRIGIDRVQGWYLSEEISRDDI 539


>gi|91213600|ref|YP_543586.1| hypothetical protein UTI89_C4647 [Escherichia coli UTI89]
 gi|91075174|gb|ABE10055.1| hypothetical protein YjcC [Escherichia coli UTI89]
          Length = 531

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 268 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 327

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 328 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 385

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 386 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 444

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 445 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 504

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 505 FFAKAMPPQVFMQWMEQ 521


>gi|238895876|ref|YP_002920612.1| hypothetical protein KP1_3998 [Klebsiella pneumoniae NTUH-K2044]
 gi|238548194|dbj|BAH64545.1| hypothetical protein KP1_3998 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 723

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 156/439 (35%), Gaps = 27/439 (6%)

Query: 516 ANDITEQK-KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
             DI  +  ++       A +D LTG+PN ++    L +           +  +  + ID
Sbjct: 306 MADIYARSDRNKRRWRSQAEEDPLTGLPNLRALESHLQSC---------PQQAICSLRID 356

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
               ++   G+ +G D    + R +  LL   D + ++ G+   ++L         +   
Sbjct: 357 NLDFLSRHYGLMMGVDCKRQIIRALQPLLGAADKVFQVPGSELILVLDG---PEPSSRLN 413

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---H 691
             +        +   + + +     +           +ML         A          
Sbjct: 414 HMVAVLNHKKFSWHNQPLDLEFGAAWGRDDGQGEGLYQMLGQLSWLSEQAGSERRVLALD 473

Query: 692 VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGN 751
            E   V    +++V +   +   +++  L L   PI     E   G   ++         
Sbjct: 474 EEQDLVVDQTTEQVRLLMRVKQVLKDRALMLYAQPIQNPEGE---GYHEILTRMRCGDSV 530

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           I    F+ +  +  + +  ++ +LE +   +         P     +N+    L+     
Sbjct: 531 IMPDRFIPLIVQFNLSQRFDMLVLETLFSMLHK------HPGQRFSVNLLPATLMQKNSA 584

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
             + AL  +   SP  I +  +E     N + SR  L  LR  G ++ +DDFGT  +   
Sbjct: 585 GQIIALFQRYSVSPELITIEVTEEQAFSNADTSRQNLEALRAFGCAIAIDDFGTGYANYE 644

Query: 872 YLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++  D +K +G  +           +++SI+ MA+  + +++A+ +  E     L  
Sbjct: 645 RLKHLQADIIKIDGCFVRDILTDPLDAIMVKSIVEMARAKQMSVVAEYVESEPQKARLLE 704

Query: 930 MGCDYIQDSHVASPLGFNS 948
           +G +Y+Q   +  P     
Sbjct: 705 LGVNYLQGYLIGKPQPLGE 723


>gi|170721619|ref|YP_001749307.1| diguanylate phosphodiesterase [Pseudomonas putida W619]
 gi|169759622|gb|ACA72938.1| diguanylate phosphodiesterase [Pseudomonas putida W619]
          Length = 528

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 111/271 (40%), Gaps = 7/271 (2%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                        + +L  A+E  E    + P++R  D    G E L++W+HP  G +  
Sbjct: 249 CTCRWQIRRANSPRAELRRALEADEFLPYFQPVVRKGDYRWAGAEVLMRWNHPHEGLVRP 308

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+  AE    I  +   +++  A+ +  +          I INI +    D  L +  
Sbjct: 309 DLFIPYAEHSGQIVDMTRALMQHTAQSLAPY-AALLEDGFHIGINITADHCHDLALIDDC 367

Query: 815 QALISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +      P R  + L  +E  ++     +  L  +L ++G+ + LDDFGT  S L+Y
Sbjct: 368 RTFLEHF--PPGRVVLTLELTERKLIEATGVTLELFDKLHEMGVMIALDDFGTGQSSLNY 425

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L     D +K + S +           IL SII ++  +   I+A+ +  E+  + L R 
Sbjct: 426 LRQFKIDYLKIDQSFVAMIGGDALSQHILDSIIELSAKLGLGIVAEGVETEVQREYLARY 485

Query: 931 GCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
             D+ Q    A P+     L+ L  R  + +
Sbjct: 486 DVDFQQGYLFARPMPAAQFLQALATRPGVTR 516


>gi|330831028|ref|YP_004393980.1| response regulator [Aeromonas veronii B565]
 gi|328806164|gb|AEB51363.1| Response regulator [Aeromonas veronii B565]
          Length = 393

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 4/245 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+E  +L   Y P +     E VG+EAL +W HP++G I    F+ +AE   +I  
Sbjct: 137 ELRRAIEQDQLLPWYQPKVSFASGEWVGMEALARWQHPEFGLIPPGRFISLAEHNGLIDP 196

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++ +   D   W +      + + +N+++  L++ +LC  +     +   +P  I 
Sbjct: 197 LTEVIISKSLSDGHLWEETG--LSLNLSMNLSTTSLIEGDLCNLLIDQCKRWSINPELIT 254

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES  + +  +S  +L RLR  G  L++DDFGT  S +  L  +PF  +K + S + 
Sbjct: 255 LEVTESAFVQDLGKSLEVLTRLRMHGFGLSIDDFGTGYSSMQQLALLPFTELKLDRSFVD 314

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +   R+AI+ S I +A+ +    +A+ +  E   + L ++GCD  Q    A P+  +
Sbjct: 315 RCHADPSRLAIIESSIELARKLGLKSVAEGVEDEATWRVLAQLGCDLCQGFFSARPMPRS 374

Query: 948 SILKL 952
            +   
Sbjct: 375 ELANW 379


>gi|289664632|ref|ZP_06486213.1| response regulator [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 427

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 123/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ W  +     + + +N++ + L ++   E + A +S    SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWHAEGFD--LSLALNLSPRLLGEDHFLEELCAKLSDNGLSPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|294665337|ref|ZP_06730628.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292604886|gb|EFF48246.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 427

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 123/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E +   + +   SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWRAEGLD--LSLALNLSPRLLGEDHFLEELCTKLGENGLSPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|320179058|gb|EFW54017.1| hypothetical protein SGB_03757 [Shigella boydii ATCC 9905]
          Length = 528

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 122/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGTYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IAK +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAKGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|262404867|ref|ZP_06081421.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
 gi|262348951|gb|EEY98090.1| sensory box/GGDEF family protein [Vibrio sp. RC586]
          Length = 828

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 189/510 (37%), Gaps = 40/510 (7%)

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILR 511
           W   +H   +        +F+  R G    E R         +  +   P+ N       
Sbjct: 337 WGELLHHKGQQQVMHHSMTFLALREG----ELRDIELAPLPIYPQVVTSPLFNLIRHAFH 392

Query: 512 YIGIANDITEQKKSLEGILCNAFQ--DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
            + +  D   Q+   +  L  A    D  TG+PNR    +RL T  +           ++
Sbjct: 393 DLDVMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLQTFAENEH--------LI 444

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFP----DILARLSGNRFGIILISEN 625
           VI +  + +IN+  G  VGD +L  L+ +    L        +L  +    +  +  S  
Sbjct: 445 VIKVTNFNQINEKYGYPVGDKLLCDLSEQFQRYLDQKLEGCSVLYAIGVGEWATVFHSRV 504

Query: 626 NSLKIADFAIAMRKSIAM----PINLLEREITVTASIGFASWTSSK---ITSSEMLKNAE 678
           +   I        + +      P  L   +  ++ S+     + S     T  ++L  A 
Sbjct: 505 DGKGIHSHFYQFVEQLEHVNFEPWGLPNVD-YLSISLCAGLVSQSDFTEHTPDDLLLRAI 563

Query: 679 LAMYHAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEI 735
            A  +A     +   + R+ +    R +R+     +  AV   ++ +   PI +  +  +
Sbjct: 564 EARRNAFSNNRHFCNASRLKTQETVRQERLNWLSRVSRAVLRDDVVVYAQPICQARNHIV 623

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
              E L++ +  +   I    F+ I  +  +   ++  M+      +    +        
Sbjct: 624 ASYECLVRIED-EGEIILPGHFLPIITDTHLYTRLSRQMITHTFNMMRHRPEAF------ 676

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
             IN++ +DL+       ++A I      PSR+ L   ES  + +  R   +    R +G
Sbjct: 677 -SINLSPQDLMSERTLLHLEAAIKSMA-DPSRVGLEVLESEQIKDYGRMIEVCNHFRSLG 734

Query: 856 ISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTI 913
            ++ +DDFG+  S +  +  +    +K +GSL+    +   +  I   ++ + + +    
Sbjct: 735 ATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDAKQRRIAEQLVKLCQVLNAKT 794

Query: 914 IAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           +A+ ++ +   +    MG DY+Q   +  P
Sbjct: 795 VAEFVHNQTVCRISEDMGVDYLQGYFLGRP 824


>gi|21243595|ref|NP_643177.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
 gi|21109166|gb|AAM37713.1| response regulator [Xanthomonas axonopodis pv. citri str. 306]
          Length = 427

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A + +   SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWRAEGFD--LSLALNLSPRLLGEDHFLEELCAKLGENGLSPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|83309869|ref|YP_420133.1| EAL domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82944710|dbj|BAE49574.1| EAL domain [Magnetospirillum magneticum AMB-1]
          Length = 599

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/534 (17%), Positives = 206/534 (38%), Gaps = 30/534 (5%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D++ + D   + +        ++G  + ++ G     +  IH +D       L    G  
Sbjct: 63  DVLLELDTQGNTMFAVGAAMALVGRGAKALTGQP--LVKIIHPSDHTALSQALKQMAGGE 120

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R R     R+   D +   + +      +    ++  +G        K+           
Sbjct: 121 RVR-NAVLRILRPDGKASEVTMSGYRHPSVPDRLMVALGHPGGFHAHKE----------- 168

Query: 536 DNL--TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           D +  TG+ ++ SF      +L+ +A DD  + T++     +  KI+ + G +   + L 
Sbjct: 169 DRVGETGLLDKDSFQAMAANLLESAAPDDPYQLTLV-----ELPKIDALSGDSAAQEALT 223

Query: 594 -SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L  R+  L    D + +L   +FG++  +  ++  I+        ++ +P     +  
Sbjct: 224 TELGNRLKALSVGGDAVGQLDEGKFGVLHSAAVSADSISKSVTQ-AAAVVLPDAPPIQAT 282

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLC 712
             T  +  A     +   +        A+  A++ G        +    S  V    D+ 
Sbjct: 283 LATLMLDVADVPPEEAARALTYTLNRFAL-EAENGGNLADLMKDLQPRLSATVKQMNDVR 341

Query: 713 LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL 772
             V   +  L++ PI+ L    +   E L+++        S  E +  AE+  M+  +++
Sbjct: 342 NTVTGGDFDLMFQPIVDLWTGVVHHFECLVRFKGEDNK--SPYETVTFAEDTGMVGMLDM 399

Query: 773 FMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSF 832
            +LER    + S    AN   +   +N++   L D  +   ++ +++ T     R+    
Sbjct: 400 ALLERAVAFMRS--SVANNDSLKFAVNLSGYSLSDPTVVRRLKEILTTTADLRKRLVFEM 457

Query: 833 SESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS- 891
           +ES  + + +    ++  +RK G  + LDDFG   +   YL  +  D VK +GS +  + 
Sbjct: 458 TESAQVRDLKAVNDVIQIIRKQGHEVCLDDFGAGHAAFHYLRALKVDNVKIDGSYIKDAM 517

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            + + ++ +++I+ +   +  T  A+ +        L  +   + Q  +   PL
Sbjct: 518 RSNEDVSFIKAIVGLCTELGVTTTAEYVEDAETANLLKLLKVRFGQGWYFGKPL 571


>gi|330828888|ref|YP_004391840.1| response regulator [Aeromonas veronii B565]
 gi|328804024|gb|AEB49223.1| Response regulator [Aeromonas veronii B565]
          Length = 393

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 4/245 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A++N +L   Y P +     + VG+EAL +W HP++G IS   F+ +AE   +I  
Sbjct: 137 ELKRALDNDQLLPWYQPKVGFASGQWVGMEALARWQHPEYGLISPGMFIPLAENNGLIDQ 196

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++ +  +D   W        + + +N+++  L++ +LC  +     +   +P  I 
Sbjct: 197 LTDVIINKSLQDCHLWGQTG--LSLNLSMNLSTTSLIEGDLCHFLINQCQRWGVNPELIT 254

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES  + +  ++  +L RLR  G  L++DDFGT  S +  L  +PF  +K + S + 
Sbjct: 255 LEVTESSFVEDIGKALEVLTRLRMHGFGLSIDDFGTGYSSMQQLALLPFTELKLDRSFVD 314

Query: 890 G--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
              +   R+AI+ S I +A+ +    +A+ +      + L ++GCD  Q    A P+  +
Sbjct: 315 RCYADPSRLAIIESSIELARKLGLKSVAEGVEDVQTWQLLAKLGCDICQGFFTARPMPRS 374

Query: 948 SILKL 952
            +   
Sbjct: 375 ELQHW 379


>gi|262163688|ref|ZP_06031429.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
 gi|262027904|gb|EEY46568.1| sensory box/GGDEF family protein [Vibrio mimicus VM223]
          Length = 830

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 174/461 (37%), Gaps = 34/461 (7%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNLTGIPNRQSFLDRLTTILDL 557
            P+ N        + +  D   Q+   +  L  A    D  TG+PNR    +RL    + 
Sbjct: 383 SPLFNLIRHAFHDLDVMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLERFAEN 442

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLS 613
                     ++ I +  + +IN+  G  VGD +L  L+ +    L         L  + 
Sbjct: 443 EH--------LVAIKVTNFNQINEKYGYPVGDKLLCDLSEQFQAYLDQKLAGHSSLYAIG 494

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAM----PINLLERE-ITVTASIGFASWTS-SK 667
              +  +  S  +   I        + +      P  L   + ++++   G  S    S+
Sbjct: 495 VGEWATVFYSRVDEQCIHSHFYQFVEQLEHVNFEPCGLPNLDYLSISLCAGLVSHRDFSE 554

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVY 724
            T  ++L  A  A  +A +   +   + R+      R +R+     +  AV   ++ +  
Sbjct: 555 HTPDDLLLRAIEARRYAFNNNRHFCNASRLKLQETVRQERLNWLSRVSRAVLRDDVVVYA 614

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI       +   E L++ +  +   I    F+ I  +  +   ++  M+      +  
Sbjct: 615 QPICEARSHVVASYECLVRIED-EGEIILPGHFLPIITDTHLYTRLSRQMITHTFNMMRH 673

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
             +          +N++ +DL+     + ++A I      PSR+ L   ES  + +  R 
Sbjct: 674 RPEAF-------SLNLSPQDLMSERTLQHLEAAIKSVA-DPSRVGLEVLESEQIKDYGRM 725

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSI 902
             +    R +G ++ +DDFG+  S +  +  +    +K +GSL+    +   +  I   +
Sbjct: 726 IEVCNHFRSLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQL 785

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + + + +    +A+ ++ +   +    MG DY+Q   +  P
Sbjct: 786 VKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRP 826


>gi|258622838|ref|ZP_05717855.1| GGDEF family protein [Vibrio mimicus VM573]
 gi|258584899|gb|EEW09631.1| GGDEF family protein [Vibrio mimicus VM573]
          Length = 830

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 174/461 (37%), Gaps = 34/461 (7%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNLTGIPNRQSFLDRLTTILDL 557
            P+ N        + +  D   Q+   +  L  A    D  TG+PNR    +RL    + 
Sbjct: 383 SPLFNLIRHAFHDLDVMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLERFAEN 442

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLS 613
                     ++ I +  + +IN+  G  VGD +L  L+ +    L         L  + 
Sbjct: 443 EH--------LVAIKVTNFNQINEKYGYPVGDKLLCDLSEQFQAYLDQKLAGHSSLYAIG 494

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAM----PINLLERE-ITVTASIGFASWTS-SK 667
              +  +  S  +   I        + +      P  L   + ++++   G  S    S+
Sbjct: 495 VGEWATVFYSRVDEQCIHSHFYQFVEQLEHVNFEPCGLPNLDYLSISLCAGLVSHRDFSE 554

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVY 724
            T  ++L  A  A  +A +   +   + R+      R +R+     +  AV   ++ +  
Sbjct: 555 HTPDDLLLRAIEARRYAFNNNRHFCNASRLKLQETVRQERLNWLSRVSRAVLRDDVVVYA 614

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI       +   E L++ +  +   I    F+ I  +  +   ++  M+      +  
Sbjct: 615 QPICEARSHVVASYECLVRIED-EGEIILPGHFLPIITDTHLYTRLSRQMITHTFNMMRH 673

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
             +          +N++ +DL+     + ++A I      PSR+ L   ES  + +  R 
Sbjct: 674 RPEAF-------SLNLSPQDLMSERTLQHLEAAIKSVA-DPSRVGLEVLESEQIKDYGRM 725

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSI 902
             +    R +G ++ +DDFG+  S +  +  +    +K +GSL+    +   +  I   +
Sbjct: 726 IEVCNHFRSLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQL 785

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + + + +    +A+ ++ +   +    MG DY+Q   +  P
Sbjct: 786 VKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRP 826


>gi|260544438|ref|ZP_05820259.1| diguanylate cyclase/phosphodiesterase [Brucella abortus NCTC 8038]
 gi|260759704|ref|ZP_05872052.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 4 str.
           292]
 gi|260762945|ref|ZP_05875277.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260097709|gb|EEW81583.1| diguanylate cyclase/phosphodiesterase [Brucella abortus NCTC 8038]
 gi|260670022|gb|EEX56962.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 4 str.
           292]
 gi|260673366|gb|EEX60187.1| diguanylate cyclase/phosphodiesterase [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 599

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 110/523 (21%), Positives = 205/523 (39%), Gaps = 32/523 (6%)

Query: 274 HWNRWHAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMK 332
             ++W A          A + +L   S Y      A +A +T+    +       Y   K
Sbjct: 84  DLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAK 143

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
                ++ +   + +    I         +   ++ P  +  + +   L  F     + A
Sbjct: 144 AVI--LMSVCTLMPVLAGLILAG-TPFHIIIGLLLIPYFLSNIQMANGLREF-----LFA 195

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS-MHGPIRN 451
                + +     R   A+      +  +D  +           ++ +A  + +HG    
Sbjct: 196 AVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAMMRIAEHTKLHGRKLE 255

Query: 452 WL-------PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
            L            ND  N R  ++  +  R+ R  ++   R       ++        +
Sbjct: 256 VLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDR------RYIECIGNQTVS 309

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           S       + +  D+T++ +S   I   A  D LTG+PNR  F   + ++      D N 
Sbjct: 310 S-----GAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSL--RPHQDQNS 362

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           +  ++VIDI+ +K +ND LG   GD +L   + R+  L     + +R  G+ F I + + 
Sbjct: 363 KVALIVIDINHFKHVNDTLGHHTGDVLLRLFSERLNSLDPQRYVASRFGGDEFVIFVFNL 422

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
           ++S ++      +  ++    +L   ++ +  S G A     K     M   A+LA+Y A
Sbjct: 423 HDSSEVNGMMEHIISAVTGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALYEA 482

Query: 685 KHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALI 742
           K        +F  +     R    +K DL  AV   E+++ Y PI+      IV  EAL 
Sbjct: 483 KGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALA 542

Query: 743 QWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISW 785
           +W+H + G +  +EF+ +AEE+ +I  I  FMLE+   D +SW
Sbjct: 543 RWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSW 585


>gi|294625040|ref|ZP_06703689.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600670|gb|EFF44758.1| response regulator [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 427

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ W  +     + + +N++ + L ++   E +   + +   SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWHAEGLD--LSLALNLSPRLLGEDHFLEELCTKLGENGLSPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|117620507|ref|YP_855273.1| diguanylate cyclase/phosphodiesterase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561914|gb|ABK38862.1| diguanylate cyclase/phosphodiesterase domain 2 [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 334

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 13/323 (4%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGP 448
           +       +      E+   A+ G+G  +W   +   + +        +LG     +   
Sbjct: 14  LQENERLKRVAEDAREKLEAAMDGTGLCIWQNHVPTGKLIIFNRRWGAMLGYQPKELSAH 73

Query: 449 IRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNG 507
              W  ++H  DR+         +  +    Q   R+ A D +  W++ R R +  ++ G
Sbjct: 74  FDVWREHLHPEDRERVLQAFFDHLSGKSPFYQVMHRMIAKDGKTTWVLDRGRVVERDAQG 133

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           + +R +G   DIT +K+  + +   A +D LTG+ NR +   +                 
Sbjct: 134 NPIRVMGTHIDITHEKEYEQQLAQLAHRDPLTGLLNRTALQRQF----------PQEYQA 183

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +  ID+D +K++ND LG   GD++L++LTRR+ +  +    + RL G+ F ++L   ++ 
Sbjct: 184 ICFIDLDDFKQVNDNLGHRAGDELLIALTRRLRDCCEEGVKIGRLGGDEFVLLLPWTSDD 243

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            + +  A     +I+ P  L   + +V  S+G A+        S  L  A+ AMY  K  
Sbjct: 244 PRTSHLARQCINAISTPFELPNGDASVGLSMGIAAIRPQ-DDFSTALARADQAMYRVKRS 302

Query: 688 GGNHVESFRVSSFRSDRVMIKED 710
           G       + S           +
Sbjct: 303 GKQGFYVSQPSGQPLLDQEQVNE 325


>gi|312879105|ref|ZP_07738905.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
 gi|310782396|gb|EFQ22794.1| diguanylate cyclase with PAS/PAC sensor [Aminomonas paucivorans DSM
           12260]
          Length = 786

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/294 (27%), Positives = 138/294 (46%), Gaps = 9/294 (3%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLPYI 456
               ++  LA      + + +   D     ++    +  + G A   + G   R     +
Sbjct: 469 VETEKQLRLAASVFENAQEGILVADREGTILSVNRALCGMTGYAPEELRGQNPRILKSGV 528

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H +    ++T+ D+ +    G  Q E   R  D + +   + I  + +  G IL ++GI 
Sbjct: 529 HDD--AFYKTLWDAILNQ--GSWQGEIWNRHKDGRVYPEWLTISAVRDYTGRILNFVGIT 584

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            D+TE+K+  E I   A  D LTG+PNR+ FL+ L   L L+    +L   V+ +D+D +
Sbjct: 585 RDLTERKRYEERIAHEATHDALTGLPNRRHFLESLQHHLALADRAGDL-LGVLFMDLDGF 643

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K IND LG  VGD +L ++  R+   ++  D++AR+ G+ F  +L   +    +   A  
Sbjct: 644 KGINDTLGHDVGDRLLCAVAERLQHCVRASDLVARMGGDEFTFLLPQLHGREDMKGVAGK 703

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +  +   P  L +  + V+ASIG A +         +LK A++AMY  K RG N
Sbjct: 704 ILLAFREPFALGKDTVRVSASIGGALFPLDDRDLQGLLKLADMAMYRTKERGRN 757



 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 63/146 (43%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
             V A     + +    ER +LA+ GS + +WDWDI+  R+  +P    ILGL       
Sbjct: 334 AMVQAIHRREEALRVSEERYALAMKGSNEGLWDWDILEGRLYVSPRWKEILGLDPEEPMD 393

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
            +  W   I+  DRD     L + +     +    FR+R  D +  W+  R     +  G
Sbjct: 394 RMAQWEARIYPEDRDEVVASLSAAMAQEEIQYDQTFRMRHGDGEDRWVRCRGVARYDGEG 453

Query: 508 DILRYIGIANDITEQKKSLEGILCNA 533
           + +R  G   ++T Q ++ + +   A
Sbjct: 454 NPVRMAGSMGEVTGQVETEKQLRLAA 479


>gi|239623869|ref|ZP_04666900.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521900|gb|EEQ61766.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 965

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 4/331 (1%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +      +  + A+    + +    ER  + +  + D +++WDI +D VT + +     G
Sbjct: 638 MEYLVFALMDITASKKDQEELRLSLERHKIIMEQAEDALFEWDIEKDTVTHSANFEKKFG 697

Query: 440 LASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
               S +   R  ++ +IH  D  +F  +LDS +     R + EFR+  A  ++ W  +R
Sbjct: 698 YTPISNNFSKRIRFVSHIHPADVPDFTEMLDSLMKGTIYR-EIEFRLSDAAGRYRWCRLR 756

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
                ++ G + R IG+  D+ EQK++ E +   A +D LT + NR++    +  IL+  
Sbjct: 757 ASSQFDAAGRVSRVIGMLADVDEQKRAEEALQYQAERDELTQLYNRRTARRLIEAILEEP 816

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                    +MV+D+D +KKIND  G   GD VL ++   +    +  D+LAR+ G+ F 
Sbjct: 817 CVQG--YRALMVLDVDDFKKINDSNGHMFGDSVLKAVADILTRQFRSEDVLARIGGDEFL 874

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           + +    +   +      +  SI          I  + SIG A         + + + A+
Sbjct: 875 LFMSHVPDVKTVETRMAMVLDSIQDMCLKQGMVIHPSCSIGAAFQPIDGNDFNTLFQRAD 934

Query: 679 LAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
            AMY AK +G +  + +  S      + I+ 
Sbjct: 935 AAMYGAKGKGKSCFQMYDASIRMPSDLGIEA 965



 Score = 64.6 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           D     V T   +  +LG + G +     N +L  I+  DR          +      ++
Sbjct: 552 DKEFTIVETNGGMRKMLGYSDGEIKTRFDNRYLNMIYPADRSRIMEETGRQLE-SGNSVE 610

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            E+R+ A D +  W++ R + ++  N ++   +    DIT  KK  E + 
Sbjct: 611 LEYRLTAKDGRIIWVLERCQSITGKN-NMEYLVFALMDITASKKDQEELR 659


>gi|117620916|ref|YP_857959.1| EAL domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562323|gb|ABK39271.1| Rtn protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 510

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 107/249 (42%), Gaps = 3/249 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A++  E      P++   D    G E L++W HP+ G IS   F+ +AE+  +I 
Sbjct: 262 QELRRALDQREFIPYLQPVVTGDDAHWSGCEVLMRWQHPRQGLISPDRFIPLAEDSGLIV 321

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++E++                    NI++    D  L E  +  I+    +P ++
Sbjct: 322 PMTRLLMEQVREQFAGRVHSLPR-GFHFGFNISASHCKDMSLLEDCRDFINAFRENPIKL 380

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   E +  L   L ++G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 381 VLELTERELIVADETTDRLFAELHQLGVFIAIDDFGTGHSSLTYLQQFQVDFLKIDQSFV 440

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ ++I +A  +   ++A+ +  E+    L     +++Q      P+  
Sbjct: 441 GMIGSDALSSHIVENVIDLATRLGLLLVAEGVENEVQAAYLRARQVNFLQGYLYGRPMPM 500

Query: 947 NSILKLLKE 955
                LL +
Sbjct: 501 KEFAGLLAQ 509


>gi|78777182|ref|YP_393497.1| response regulator receiver/GGDEF/EAL domain-containing protein
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497722|gb|ABB44262.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 564

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 180/444 (40%), Gaps = 37/444 (8%)

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
            Y  I  DI   + +         +D+LT + N++  L  +   +   A         ++
Sbjct: 143 HYEQIEKDI--LQNTASSQEELENRDSLTSLYNQKYLLKIINNDVMKWA---------IL 191

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI-LARLSGNRFGIILISE-NNSL 628
           I+I+ +K IND    A G+ +L  +   + E  K     L RLS + F ++     ++  
Sbjct: 192 ININDFKLINDYYSYAHGNHLLFQIAELLREEAKEHGYGLFRLSNDEFILLRDEAPSSCE 251

Query: 629 KIADFAIAMRKSI--AMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +I + AI + +++       +    I+V  ++G A+          +L+N   ++ HAK 
Sbjct: 252 EIKEEAIQISRTLDKRRYTLIGVDNISVGVTMGIANSEHH------LLENLHRSLIHAKR 305

Query: 687 RGGNHVES---FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G  +              + + +KE L  ++E   +  VY PI+     +    E L++
Sbjct: 306 YGLRYALHRDVPDDRDSVKNIIEVKELLKNSIEKDLIIPVYQPIVMKD--KKFKYEVLMR 363

Query: 744 WDH--PKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
             +       +S + F+ IA+       I+  ++ +    +           +   IN +
Sbjct: 364 IRNSLEGGELLSPALFLEIAKNHSYYNEISQMVIFKAIDKM------LADKDVVFSINFS 417

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
             D+ + +L + ++  I K      R+     ES  + N    +  + R ++ G+ + +D
Sbjct: 418 YADMKNKQLLQKLEDSIVKNAL-GDRLVFEIVESDQLDNIAIVQGFIARFKEFGVQIAID 476

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIY 919
           DFG+  S  +++  +  D +K + SL+            + +II  A  +   ++A+ + 
Sbjct: 477 DFGSGYSNFAHIFLLKPDFIKIDASLIKEMLNNSDMHIFVETIITFAHKLGVEVVAEHVS 536

Query: 920 GEIDIKELTRMGCDYIQDSHVASP 943
            +     L  +G D +Q  ++  P
Sbjct: 537 SKELYDALFELGIDAMQGYYLGYP 560


>gi|331650081|ref|ZP_08351154.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli M605]
 gi|330908396|gb|EGH36915.1| hypothetical protein ECAA86_04437 [Escherichia coli AA86]
 gi|331041026|gb|EGI13183.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli M605]
          Length = 528

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 123/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L+L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLFLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++    N    ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLATHNDR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|322812532|pdb|3PJW|A Chain A, Structure Of Pseudomonas Fluorescence Lapd Ggdef-Eal Dual
           Domain, I23
 gi|322812533|pdb|3PJX|A Chain A, Structure Of Pseudomonas Fluorescence Lapd Ggdef-Eal Dual
           Domain, P32
          Length = 430

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 173/435 (39%), Gaps = 22/435 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ +  E +   ++QDNLTG+ NR+ F  +L   +       +    ++++ +     +N
Sbjct: 6   EQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQASSGY--LLLLRVKDLAGLN 63

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
             LG    D++L ++  ++           +++ R+ G  F ++        +    A +
Sbjct: 64  QRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAPGMT-REEALQLAQS 122

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  +++        ++   ASIG A + +   +   +L   + A+  A+ +G  +     
Sbjct: 123 LDSALSSLYATGATDVAAVASIGLAPF-AHGDSPQAVLSLGDQALAQAEGQGEQNWACLD 181

Query: 697 VSSFRS---DRVMIKEDLCLAVENSELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNI 752
            S       D       L  A+      L + P++   D + ++  + L +    +   I
Sbjct: 182 QSLVADVGDDHHAWHRLLDQALNQRRFELFFQPVVAAQDTQLVLHYKVLSRLLDEQGQTI 241

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+   E       ++  MLER+   +    +        + +N++S  L D +   
Sbjct: 242 PAGRFLPWLERFGWTARLDRLMLERVLEQMAGHEES-------LALNLSSATLADPQALN 294

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++       +R+ L   E  +         L  RLR++G SL+L  FG + S++  
Sbjct: 295 KVFEILRAHSNLGARLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGN 353

Query: 873 LGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +    +K +GS +    +   +   + +I   A +I+  +IA+ +  E ++  +  M
Sbjct: 354 LARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREM 413

Query: 931 GCDYIQDSHVASPLG 945
           G   +Q      P  
Sbjct: 414 GLYGVQGQLFGEPKP 428


>gi|167552295|ref|ZP_02346048.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205323048|gb|EDZ10887.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 533

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIVWLQQ 518


>gi|298717513|ref|YP_003730155.1| signal transduction protein [Pantoea vagans C9-1]
 gi|298361702|gb|ADI78483.1| Predicted signal transduction protein [Pantoea vagans C9-1]
          Length = 387

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 115/245 (46%), Gaps = 7/245 (2%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L   ++  E +  + PI+ L D  ++G E L +   P+      ++F+   E   ++  +
Sbjct: 14  LQQRIKLGEFHPFFQPIVSLEDLRVMGFEMLARHISPEGIVTPPADFIPAMERSGLLDEL 73

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
            L ++ +  +   +W +Q      F+ +N++   L    L E ++    +  +  +R+K+
Sbjct: 74  MLSLMAQGFKVAATWPEQQ-----FLSMNVSPSQLDGRYLTEIIRNTAREFQFDLARLKI 128

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E+ ++ +   +R  +  L  +G ++ +DDFGT  S L++L  +P +T+K + S +  
Sbjct: 129 EITETALLNDINTARTEIEALSGMGCTIAMDDFGTGYSSLAWLIQLPVNTLKIDSSFIRS 188

Query: 891 STE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ S+  + ++++  +IA+ +  E   + L  +GC Y Q      P+    
Sbjct: 189 MLHKKDSRKIISSVAGLGRSLDMDVIAEGVETEEQAEMLRGIGCLYAQGYLFGKPVSGAE 248

Query: 949 ILKLL 953
             ++L
Sbjct: 249 SCRML 253


>gi|23008558|ref|ZP_00049953.1| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 206

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 92/187 (49%), Gaps = 7/187 (3%)

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE  +I  +  ++L +  RD   W D      I + +N++   L      + + A ++ 
Sbjct: 1   AEETGLIVPLGEWVLRQACRDAAGWPD-----GISVAVNVSPIQLRHRGFAQSVLAALAT 55

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           +    +R++L  +ESV++ + E +   L  LRK+G+ +++DDFGT  S +SYL   PFD 
Sbjct: 56  SGLVATRLELEITESVLLDDTEANLETLHTLRKLGVRISMDDFGTGYSSISYLRRFPFDK 115

Query: 881 VKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +     +    AI+R+I+ +  ++  T + + +  E  +  +   G   +Q  
Sbjct: 116 IKIDRSFVRDCAAQSEAGAIIRAIVSLGASLGITTLVEGVETEPQLATVRAEGAQEVQGY 175

Query: 939 HVASPLG 945
             + P  
Sbjct: 176 LFSPPRP 182


>gi|329999238|ref|ZP_08303386.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
 gi|328538364|gb|EGF64496.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
          Length = 293

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 123/280 (43%), Gaps = 8/280 (2%)

Query: 675 KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMD 732
           + A  A   A+ +G N +E F        +  +  + D+  A++N +  +   P +    
Sbjct: 3   RRAVSAAVTARRKGKNQIEFFDPEQMEKAQRRLMEEHDIMTALDNQQFAIWLQPQVACAS 62

Query: 733 EEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMP 792
            EI G E L++              +   E   +I  +  +++E   R + +W+ Q  M 
Sbjct: 63  GEICGAEVLLRQRQADGSWSLPPSLIERIESCGLIIPVGYWVMEEACRQLAAWQSQGIM- 121

Query: 793 PIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLR 852
            + + +N++   LL+++  E M  LI++   +P  + L  +ES  M +P+     L  LR
Sbjct: 122 -LPLSVNVSLLQLLEHDRGEEMLKLIARYRIAPGTLILEVTESCRMDDPQDVMARLRPLR 180

Query: 853 KIGISLTLDDFGTKCSLLSYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNI 909
           + G+ + LDDFG   + L  L     +P D +K +   +     + ++++ ++I +A+ +
Sbjct: 181 EAGVQIALDDFGMGYAGLHQLQQMKALPVDILKIDKVFI-DMLPEDVSMVPAMIQLARGL 239

Query: 910 ETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
              I+A+ +  +   + L   G + +Q       L   + 
Sbjct: 240 SLRIVAEGVENDAQRRWLQAAGVEVLQGHLFGCALPQEAF 279


>gi|258625075|ref|ZP_05719994.1| GGDEF family protein [Vibrio mimicus VM603]
 gi|258582626|gb|EEW07456.1| GGDEF family protein [Vibrio mimicus VM603]
          Length = 830

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 174/461 (37%), Gaps = 34/461 (7%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ--DNLTGIPNRQSFLDRLTTILDL 557
            P+ N        + +  D   Q+   +  L  A    D  TG+PNR    +RL    + 
Sbjct: 383 SPLFNLIRHAFHDLDVMTDNLAQQIRAQTSLLTASYRRDRRTGLPNRVVLRERLERFAEN 442

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLS 613
                     ++ I +  + +IN+  G  VGD +L  L+ +    L         L  + 
Sbjct: 443 EH--------LVAIKVTNFNQINEKYGYPVGDKLLCDLSEQFQAYLDQKLAGHSSLYAIG 494

Query: 614 GNRFGIILISENNSLKIADFAIAMRKSIAM----PINLLERE-ITVTASIGFASWTS-SK 667
              +  +  S  +   I        + +      P  L   + ++++   G  S    S+
Sbjct: 495 VGEWATVFYSRVDEQCIHSHFYQFVEQLEHVNFEPCGLPNLDYLSISLCAGLVSHRDFSE 554

Query: 668 ITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF---RSDRVMIKEDLCLAVENSELYLVY 724
            T  ++L  A  A  +A +   +   + R+      R +R+     +  AV   ++ +  
Sbjct: 555 HTPDDLLLRAIEARRYAFNNNRHFCNASRLKLQETVRQERLNWLSRVSRAVLRDDVVVYA 614

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
            PI       +   E L++ +  +   I    F+ I  +  +   ++  M+      +  
Sbjct: 615 QPICEARSHVVASYECLVRIED-EGEIILPGHFLPIITDTHLYTRLSRQMITHTFNMMRH 673

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
             +          +N++ +DL+     + ++A I      PSR+ L   ES  + +  R 
Sbjct: 674 RPEAF-------SLNLSPQDLMSERTLQHLEAAIKSVA-DPSRVGLEVLESEQIKDYGRM 725

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSI 902
             +    R +G ++ +DDFG+  S +  +  +    +K +GSL+    +   +  I   +
Sbjct: 726 IEVCNHFRSLGATIIVDDFGSGYSNIDEIVKLEPQVIKLDGSLIRNIDQDVKQRRIAEQL 785

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + + + +    +A+ ++ +   +    MG DY+Q   +  P
Sbjct: 786 VKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGRP 826


>gi|16762945|ref|NP_458562.1| hypothetical protein STY4462 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144432|ref|NP_807774.1| hypothetical protein t4170 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053525|ref|ZP_03346403.1| hypothetical protein Salmoneentericaenterica_11788 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424531|ref|ZP_03357327.1| hypothetical protein SentesTyphi_01961 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213855317|ref|ZP_03383557.1| hypothetical protein SentesT_15132 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289828876|ref|ZP_06546619.1| hypothetical protein Salmonellentericaenterica_20368 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25323372|pir||AG1018 probable exported protein STY4462 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505252|emb|CAD09248.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140070|gb|AAO71634.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 533

 Score =  258 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIVWLQQ 518


>gi|306815819|ref|ZP_07449964.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli NC101]
 gi|305850794|gb|EFM51250.1| putative signal transduction protein (EAL domain containing
           protein) [Escherichia coli NC101]
          Length = 517

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 119/255 (46%), Gaps = 5/255 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKHGVRYCQGW 501

Query: 939 HVASPLGFNSILKLL 953
             A  +     ++ +
Sbjct: 502 FFAKAMPPQVFMQWM 516


>gi|238763358|ref|ZP_04624322.1| hypothetical protein ykris0001_3140 [Yersinia kristensenii ATCC
           33638]
 gi|238698457|gb|EEP91210.1| hypothetical protein ykris0001_3140 [Yersinia kristensenii ATCC
           33638]
          Length = 490

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+    +  VG E L++W HP  G I  + F+ +AE+  +I  +
Sbjct: 245 LKQALENNEFIPYMQPIVSGKGQCWVGCEVLMRWQHPGQGLIQPNHFIPMAEDSELIVPM 304

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 305 TRAIMQQVSAKFAPYVNQLP-EGFHFGFNISANHCRDLSLVDDCRHFIQAFGGNKINITL 363

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++   E +  L   L  +G+ + +DDFGT  S LSYL     D +K + S +  
Sbjct: 364 ELTERKLIVTDEITDKLFAELHALGVFIAIDDFGTGHSSLSYLQKFKVDFLKIDQSFVGM 423

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  E  ++ L     DY+Q      P+  N 
Sbjct: 424 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENETQMRYLQAHNVDYLQGYMYGRPMPMNE 483

Query: 949 ILKLL 953
             K L
Sbjct: 484 FAKYL 488


>gi|215489407|ref|YP_002331838.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli O127:H6 str. E2348/69]
 gi|312965667|ref|ZP_07779896.1| EAL domain protein [Escherichia coli 2362-75]
 gi|215267479|emb|CAS11933.1| predicted signal transduction protein (EAL domain containing
           protein) [Escherichia coli O127:H6 str. E2348/69]
 gi|312289641|gb|EFR17532.1| EAL domain protein [Escherichia coli 2362-75]
          Length = 517

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 119/255 (46%), Gaps = 5/255 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKHGVRYCQGW 501

Query: 939 HVASPLGFNSILKLL 953
             A  +     ++ +
Sbjct: 502 FFAKAMPPQVFMQWM 516


>gi|291296552|ref|YP_003507950.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Meiothermus ruber DSM 1279]
 gi|290471511|gb|ADD28930.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Meiothermus ruber DSM 1279]
          Length = 726

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 163/441 (36%), Gaps = 31/441 (7%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           +    +  +   D  TG+ N       L  +L  +         ++ +     +++  + 
Sbjct: 297 ELRNEVQYSRQHDPQTGLLNLYGLRTTL-ALLSPAPR------ALLALHCRSLERVRRLE 349

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A    V+ SL   +   L+  D LA      F ++L   +N          ++  +  
Sbjct: 350 GEATWLAVIHSLAEAMQAELRSTDHLA-FERGIFWLVLEGVDNPTTTQAVLTRLQVRVRE 408

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS---SF 700
            +     ++  +  +G A       T  E+ + AE+A+  A+       +   V      
Sbjct: 409 QLAARWPQLDFSPRVGVAFAQP-GSTPLELPQAAEIALEQAQPGQVRFYDPALVKSTLEE 467

Query: 701 RSDRVMIKEDLCLAVENS---ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                 + + L            +L Y PI  L D  +  LEAL++W HPK G IS + F
Sbjct: 468 DWLHQALGQALRPLKSGGTPLGFFLHYQPIRTLEDRRLQHLEALLRWQHPKRGPISPALF 527

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAEE   +  +  ++L         W        I I +N++   L    L E +  L
Sbjct: 528 LPIAEEEGWMVELGGWVLTEAIARAAQW-------GIPIAVNLSGSQLE-PSLPERIAGL 579

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +   +P  + L  +E V +   E +  +L +L + G  L LDDFG+  S L  +  +P
Sbjct: 580 LQRHGLAPQHLILEVTEQVALN--ETNLAVLRQLARQGHPLYLDDFGSGFSSLERITSLP 637

Query: 878 FDTVKFNGSLMTGSTEKRIA------ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              +K     +        A      ++R++  +   +   +I + I  E   + L   G
Sbjct: 638 LAAIKLGQGFVKNLGPNPRADTSEARLMRAVQAIGHGLRLKVIVEGIETEAQYRFLLAEG 697

Query: 932 CDYIQDSHVASPLGFNSILKL 952
               Q   +  P    S  +L
Sbjct: 698 FSLGQGYLLGRPAAIESSEQL 718



 Score = 40.3 bits (93), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 8/112 (7%)

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
           G +V   D+    V         +GL +  +       L +    D      ++   +  
Sbjct: 22  GIMVLQTDLEGRFVYANRAYLQYMGLQALPIGASA---LEHTDPRDVPTVIEVVHRALEN 78

Query: 475 RRGRLQYEF--RVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKK 524
                  EF    R   N+  W  +    + + +G  +    I  DI++  +
Sbjct: 79  PHQTFWVEFSKPTRKPWNRSRWEFM---ALLDQHGKPVGIQCIGFDISDAYR 127


>gi|33596248|ref|NP_883891.1| hypothetical protein BPP1612 [Bordetella parapertussis 12822]
 gi|33573251|emb|CAE36913.1| putative membrane protein [Bordetella parapertussis]
          Length = 524

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 122/261 (46%), Gaps = 5/261 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
              +  + + +   +  +E Y+VY P++ +     VG EALI+W       I+   F+  
Sbjct: 267 ARRQFSLPQLIRSGLRRNEFYMVYQPMVEVGTGRCVGAEALIRWRRRNGDLIAPDVFIDE 326

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE + +I  I   + E ++ D+  WR +     ++I IN+++ D+        +  + ++
Sbjct: 327 AERVGLIGKITERVFELVSSDVQRWRGRLGD--LYISINVSAADMASGAAERLLSEMFAR 384

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +PS++ +  +E  ++ + + +   +  +RK+G  + +DDFGT  S L+YL     D 
Sbjct: 385 TGLTPSQVVVELTERALL-HSDEAVAAIKIIRKMGGRVAIDDFGTGYSSLAYLTSFEVDG 443

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          ++   II MAK++   ++A+ +      + L+  G DY Q  
Sbjct: 444 LKIDKRFVDAIGRDAPSSSVSVHIIEMAKSLGLRVVAEGVETAGQQRFLSEHGVDYAQGW 503

Query: 939 HVASPLGFNSILKLLKERFPL 959
               P+  N +L + +   P 
Sbjct: 504 LFGRPMPLNELLAMARRPPPG 524


>gi|148545441|ref|YP_001265543.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
 gi|148509499|gb|ABQ76359.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida F1]
          Length = 648

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 176/436 (40%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ +  E +   ++QD+LTG+ NR+ F  +L   +  S  +D     ++++ +     +
Sbjct: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRV--SNLEDARAGYLLLLRVQGLAGL 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           N  LG    D +L ++  ++           D+++R  G  F ++     +   +   A 
Sbjct: 281 NARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAV-HLAQ 339

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHV 692
           A+  ++         +I   A IG A ++    +   +LK A+ A+  A+++   G   +
Sbjct: 340 ALEATLQSLHETGASDIDPVACIGLAPFSP-GDSPQALLKLADEALARAENQPTPGWVCL 398

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGN 751
           E    +     +    E L  A  N    L + P++     + ++  + + +    +   
Sbjct: 399 EQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVMECASSQRVLHHKVISRLRDGQGEA 458

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           + +  F+   E    +  +++ +LE++   +             + +N+++  L D +  
Sbjct: 459 LPAGRFLPWLERFGWMPRLDVLVLEKVLAHLR-------GHDQVLALNLSAATLADPKAL 511

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+ +      R+     E  +         L  RL  +G  L L  FG + S++ 
Sbjct: 512 QRIFELLGQNAALGPRLVFEIGEEQLPEQ-AALEQLTRRLHGLGFGLALQRFGGRFSMIG 570

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++    +K +GS +     +  +   + +I   A +I+  +IA+ +  E +   L  
Sbjct: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVLLE 630

Query: 930 MGCDYIQDSHVASPLG 945
           MG   IQ   V  P  
Sbjct: 631 MGVGGIQGQLVGEPAP 646


>gi|297516853|ref|ZP_06935239.1| predicted inner membrane protein [Escherichia coli OP50]
          Length = 366

 Score =  257 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 161/374 (43%), Gaps = 12/374 (3%)

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L+  +  LL+  + + +LSGN   + L +E++  +I      +++      + +  +  
Sbjct: 1   KLSHWLSPLLEPGEDVYQLSGNDLALRLNTESHQERITALDSHLKQ-FRFFWDGMPMQPQ 59

Query: 654 VTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL 711
           +  S  +     + I     E+   AEL++            +  +     D+V +   L
Sbjct: 60  IGVSYCYVRSPVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRL 119

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
             A+E++  +L+  PI  +  +  V  E L++        IS   F+ +A E  +  +I+
Sbjct: 120 QQALEHNHFFLMAQPITGMRGD--VYHEILLRMKGENDELISPDSFLPVAHEFGLSSSID 177

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
           ++++E   + +   R +         IN++   +        +  L++K      ++   
Sbjct: 178 MWVIEHTLQFMAENRAKMPAH--RFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIFE 235

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
            +ES  + N +++++ L  L+++G  + +DDFGT  +  + L  +  D +K +GS +   
Sbjct: 236 VTESNALTNVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRNI 295

Query: 892 TEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
                   I+ SI  +A+  +  ++A+ +  E   + +  +G DY+Q   +  P     +
Sbjct: 296 VSNSLDYQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQP---L 352

Query: 950 LKLLKERFPLVKNT 963
           +  L E  P+ ++ 
Sbjct: 353 IDTLNEIEPIRESA 366


>gi|157148022|ref|YP_001455341.1| hypothetical protein CKO_03829 [Citrobacter koseri ATCC BAA-895]
 gi|157085227|gb|ABV14905.1| hypothetical protein CKO_03829 [Citrobacter koseri ATCC BAA-895]
          Length = 528

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 124/262 (47%), Gaps = 5/262 (1%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
             S  R +    +  L  A++  +L L Y PII + +E+ VG EAL++W   +   +S +
Sbjct: 260 MWSRTREEYHSPRRLLQRAIDKRQLRLYYQPIIDIQNEKCVGAEALLRWPGFEGQVMSPA 319

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           EF+ +AE+  MI  I  +++E +  D+  +      P ++I IN+++ D   + L   + 
Sbjct: 320 EFIPLAEKEGMIAQITDYVVEEVFNDLGHFLAS--QPHLYISINLSASDFHSSRLIALIA 377

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
               +      +IK+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  
Sbjct: 378 EKARQHSVLAQQIKVEVTERGFI-DVPKTTPVIQAFRQAGFEVAIDDFGTGYSNLHNLYS 436

Query: 876 IPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +  D +K + S +   T    +  I   II MA+++    IA+ +     +  L + G  
Sbjct: 437 LNVDILKIDKSFIDTLTTNSTSHLIAEHIIEMAQSLHLKAIAEGVETADQVNWLFKRGVQ 496

Query: 934 YIQDSHVASPLGFNSILKLLKE 955
           Y Q  + A  +   + ++ L++
Sbjct: 497 YCQGWYFAKAMPPQAFIQWLQQ 518


>gi|26986909|ref|NP_742334.1| GGDEF domain-containing protein [Pseudomonas putida KT2440]
 gi|24981516|gb|AAN65798.1|AE016207_5 GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 648

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 175/436 (40%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ +  E +   ++QD+LTG+ NR+ F  +L   +  S  +D     ++++ +     +
Sbjct: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRV--SNLEDARAGYLLLLRVQGLAGL 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           N  LG    D +L ++  ++           D+++R  G  F ++     +   +   A 
Sbjct: 281 NARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAV-HLAQ 339

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHV 692
           A+  ++         +I   A IG A ++    +   +LK A+ A+  A+++   G   +
Sbjct: 340 ALEATLQSLHETGASDIDPVACIGLAPFSP-GDSPQALLKLADEALARAENQPTPGWVCL 398

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHP-IIRLMDEEIVGLEALIQWDHPKWGN 751
           E    +     +    E L  A  N    L + P I     + ++  + + +    +   
Sbjct: 399 EQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVIECASSQRVLHHKVISRLRDGQGEA 458

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           + +  F+   E    +  +++ +LE++   +             + +N+++  L D +  
Sbjct: 459 LPAGRFLPWLERFGWMPRLDVLVLEKVLAHLR-------GHDQVLALNLSAATLADPKAL 511

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+ +      R+     E  +         L  RL  +G  L L  FG + S++ 
Sbjct: 512 QRVFELLGQNAALGPRLVFEIGEEQLPEQ-AALEQLTRRLHGLGFGLALQRFGGRFSMIG 570

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++    +K +GS +     +  +   + +I   A +I+  +IA+ +  E +   L  
Sbjct: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVLLE 630

Query: 930 MGCDYIQDSHVASPLG 945
           MG   IQ   V  P  
Sbjct: 631 MGVGGIQGQLVGEPAP 646


>gi|269961893|ref|ZP_06176249.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833341|gb|EEZ87444.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 640

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 161/425 (37%), Gaps = 20/425 (4%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGIAVGDDVLVS 594
           D+ TG+ N     + + T             T++ ID++    K+N  LG      ++  
Sbjct: 231 DSFTGLYNLAQLKEDVAT---------QTHATLIYIDLEPTLSKLNG-LGHQGRAQLMKQ 280

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L++ +          A L     G++  +       ++ +  +           +  +++
Sbjct: 281 LSQYL-AANTEHLKRAYLPPFASGLLCFAPKLPKMESELSKLIGLLDRFYFYFDDSAVSL 339

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLA 714
                  +          ++      +   + R    V     +   +  +     +   
Sbjct: 340 VKRTIQCASIYGNHNLDPLISK----LCEQQGRDTACVNWVTHNQEENKTLNQLSFIQQC 395

Query: 715 VENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
              +E  L   P   L D  +    E L++    +   +S +EF  +  E  + + ++ +
Sbjct: 396 FRENEFELYCQPYRALSDNTQNAHFEILLRLKPKQGELMSPAEFFPLINEFGLERELDKW 455

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++E   + + +  +  N       IN+ +K L    L E +Q   +      +++    +
Sbjct: 456 VIENTFKALKNHIEDWNSIG-RCAINLTAKALNSQGLAEDIQTEANLHQIPMNKLCFEIT 514

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS-- 891
           ES  + N   +   L RLR+ G ++ LDDFGT  +   YL  +P D +K +GS +     
Sbjct: 515 ESDALRNEPIAIQNLNRLREAGSTIALDDFGTGYASFDYLRRLPLDVLKVDGSFVKNIVD 574

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
           +E    I+++I  +A +++   +A+ +  E  I  L  +   + Q   VA PL  +  L 
Sbjct: 575 SENDRIIVQAISQVASSMQLVTVAEFVESEDHIDTLKALNIQFAQGFGVARPLPLSDHLT 634

Query: 952 LLKER 956
           +L  +
Sbjct: 635 MLSNK 639


>gi|194445311|ref|YP_002039581.1| hypothetical protein SNSL254_A0383 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403974|gb|ACF64196.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 516

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDYLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+  N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMEANDFMSWLGKSAQRQNGLLK 504


>gi|206578987|ref|YP_002240055.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|290510136|ref|ZP_06549506.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Klebsiella sp. 1_1_55]
 gi|206568045|gb|ACI09821.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|289776852|gb|EFD84850.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Klebsiella sp. 1_1_55]
          Length = 519

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ +  + + Y PII L D +I G EAL +W  P    +S   F+ +AE+  +I 
Sbjct: 273 NSMLDALNSEAIQVYYQPIISLQDGKIAGAEALARWQQPDGTFLSPDIFIPLAEQTGLIT 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ +I  D+  W  Q   P + I IN++  DL    L   +   +     +  +I
Sbjct: 333 QLTEDIVRKIFTDLGPWLRQ--RPEVHISINLSVDDLRSPTLPTLLHDQLQHWGIAAEQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   + +PE +  ++   R+ G  +++DDFGT  S LSYL  +  DT+K + S +
Sbjct: 391 ILEITERGFV-DPETTMPVIAHYRQAGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   +   II MAK +    +A+ +  E     L + G  Y Q    +  L    
Sbjct: 450 DTL--EYRPLTPHIIEMAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSKALPKEQ 507

Query: 949 ILKL 952
            +  
Sbjct: 508 FILW 511


>gi|146309931|ref|YP_001175005.1| EAL domain-containing protein [Enterobacter sp. 638]
 gi|145316807|gb|ABP58954.1| EAL domain protein [Enterobacter sp. 638]
          Length = 528

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 118/253 (46%), Gaps = 7/253 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+   +L + Y PII + +++ VG EAL++W       +S +EF+ +AE+  MI+
Sbjct: 273 RLLHRALNKRQLCVHYQPIIDIKNKQCVGAEALLRWPGFNGQVMSPAEFIPLAEKEGMIE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  +++E +  D+       N P ++I IN+++ D   + L   +     +      +I
Sbjct: 333 RITDYVVEEVFNDLG--HFLGNNPHLYISINLSASDFHSSRLIALISDKAQQYSVRAQQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 391 KIEVTERGFI-DVPKTTPVIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDILKIDKSFI 449

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T    +  I   II MA+++    IA+ +     +  L + G  Y Q  H A  +  
Sbjct: 450 DTLTTNSTSHLIAEHIIEMAQSLRLKTIAEGVETAEQVTWLLKRGVQYCQGWHFAKAMPP 509

Query: 947 NSILKLLKERFPL 959
              +    ++ P+
Sbjct: 510 QEFMDW--QQHPV 520


>gi|152968101|ref|YP_001363885.1| diguanylate phosphodiesterase [Kineococcus radiotolerans SRS30216]
 gi|151362618|gb|ABS05621.1| diguanylate phosphodiesterase [Kineococcus radiotolerans SRS30216]
          Length = 442

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 117/244 (47%), Gaps = 3/244 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L   ++  EL L Y P++ L     +G+EAL++W HP+ G +  + F+ +AE   ++ 
Sbjct: 185 HRLRAGIDADELVLHYQPVVDLASRRWLGVEALVRWAHPERGLLPPAAFLPLAEASGLVV 244

Query: 769 AINLFMLERIARDIISWRDQ-ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            +   +LER       WR +      + + +N++++ L + ++ + +   +  +    S 
Sbjct: 245 PLGRTVLERACAQAARWRREVGPAADLGVAVNVSARQLSEPDVVDVVVEALVLSGLPASA 304

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E+ +  +     + L R+R +G++L LDDFGT  +  SYL     D VK +   
Sbjct: 305 LVLELTETSLAASCTEVDIALQRIRALGVTLALDDFGTGYASFSYLQRFQPDVVKLDRCF 364

Query: 888 MTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G    E+   +  +++ +A  +   ++A+ I     ++ LTR+G    Q    ++P  
Sbjct: 365 VEGLNRSERDDLLAGTLVELALRLGCDVVAEGIEHPDQVRALTRLGVRVAQGYLFSAPRD 424

Query: 946 FNSI 949
              +
Sbjct: 425 PQDL 428


>gi|198246041|ref|YP_002218158.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197940557|gb|ACH77890.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 533

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L   L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSFRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|152991388|ref|YP_001357110.1| hypothetical protein NIS_1647 [Nitratiruptor sp. SB155-2]
 gi|151423249|dbj|BAF70753.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 766

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 172/428 (40%), Gaps = 25/428 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           E+ + L  +    + D LT +PN+    + L  I       +       + DI  +  IN
Sbjct: 354 EELQLLRQLEYKTYYDLLTNLPNKLKLEEDLNNI------HERFLVNAYLFDIKNFSLIN 407

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKS 640
           +     +GD VL    +++  L+     L R S + F ++    + S  + +    + + 
Sbjct: 408 EYYSTEIGDRVLQEFAKQLRALIPKGCSLYRYSADEFIVVDFKRSLSRDVGEHIYKVFQE 467

Query: 641 IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---FRV 697
             + I      + +   +           + ++++   LA+ +A  +  N+VE      V
Sbjct: 468 KILRIKFNNDVLPINLELKVVCVKE--TQAKDLIRKLYLALMYANQKDLNYVEYSDGMDV 525

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               + +      +  A++   +  V+  I++      V  E LI+    K   ++   F
Sbjct: 526 EKDVAKKFEAIHFVKKALQEDNVVPVFQKIVKPDR---VSYECLIRIK-EKGRLLTPGSF 581

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +   +   +   +   M+ +      +  ++         IN + +D++  E+ + +   
Sbjct: 582 IDNIKNTALYYELTKVMIRKSCETFYNREEEF-------SINFSYRDVVREEIKKYLIDC 634

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           I +     +RI +   E+ V+ + +     +  +++ G  + +DDFG+  +  S L  I 
Sbjct: 635 IERYKVQ-NRIIIELLETDVIEDFKDVIQFVNNVKQYGAKIAIDDFGSGYNNFSNLIEIK 693

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
              +K +GSL+    + + A  I++ I   AK++    IA+ +Y E   K + ++G D  
Sbjct: 694 PHYLKIDGSLIKNLDKNKDAYIIVKHINAFAKDLGIPTIAEYVYNETIYKIVVKLGIDGY 753

Query: 936 QDSHVASP 943
           Q  ++  P
Sbjct: 754 QGYYIDKP 761


>gi|46203762|ref|ZP_00209109.1| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 211

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 106/195 (54%), Gaps = 4/195 (2%)

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            +F+ +AEE+ ++  I+LF++ +  R    WR++ +   I I +N++  +   ++L   +
Sbjct: 1   MDFIPLAEEMHLVDRIDLFVMRQACRKGRIWREEGHD--ITIAVNLSGVNFSADDLPGQV 58

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
             ++ +T +    ++L  +ES V+      R +L RLR +G+ L++DDFGT  S LSYL 
Sbjct: 59  AKVLEETGFPAEYLELEITESFVIDLAVDKREVLQRLRALGVRLSIDDFGTGYSSLSYLK 118

Query: 875 YIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +P +T+K + S +       + + ++ SII +A ++   ++A+ I     +  L  + C
Sbjct: 119 RLPVNTLKIDRSFVRDIARDSRDMMLVSSIIGIAHSLGLKVVAEGIEDTDQLGILVSLEC 178

Query: 933 DYIQDSHVASPLGFN 947
           D IQ   +A P+  +
Sbjct: 179 DEIQGYLIAKPMPAD 193


>gi|254447732|ref|ZP_05061197.1| sensory box/ggdef family protein [gamma proteobacterium HTCC5015]
 gi|198262512|gb|EDY86792.1| sensory box/ggdef family protein [gamma proteobacterium HTCC5015]
          Length = 612

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 110/576 (19%), Positives = 204/576 (35%), Gaps = 67/576 (11%)

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + +          +  + D +   +         P     L L +  +            
Sbjct: 76  EELEKSLTWLGAVLDLTHDGIIFANHQGHPDIFNPVALQQLELDNNQLTSM--------- 126

Query: 458 INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ-----------FHWMIIRIRPMSNSN 506
             D       L   V      L  E R    D                + +  RP    +
Sbjct: 127 --DYPALARHLKKVVRNASSALH-EIRHEIGDGSGASRTMLEMHSDQVIELHSRPFI-VD 182

Query: 507 GDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
             +L  +    DITE K S      NA  D LTG+PNR    DRL   L  +    + + 
Sbjct: 183 EKLLGRVWTLRDITELKLSEREARYNAGHDRLTGLPNRTRLYDRLEQSLSAAKRSAS-KV 241

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            ++ +D+D +K +ND  G  +GD +LV +  R+   L+  D +AR  G+ F I+L   ++
Sbjct: 242 GILFMDLDGFKPVNDHYGHDIGDLLLVEVAGRLSACLREMDTVARFGGDEFVILLHEIDD 301

Query: 627 SLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
           +   A+ A  +      P ++ +  + +  SIG A +  +  T   +LK A++AMYHAK 
Sbjct: 302 AHSAAEVAQRVINCFNTPFDVRQLTLNINTSIGIALYPDNADTPESLLKRADMAMYHAKS 361

Query: 687 RGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQW 744
           R     E +      + R+ +   +D+   +++   +L   P      ++       I W
Sbjct: 362 RSQGFFEFYSERLSDAQRLQLGEADDIQQVLQSDGPHLHTQPRRDSQGQQTSS---QIDW 418

Query: 745 DHPKWGNISSSEFMLIAEELCMIKAINL----FMLERIARDIISWRDQANMPPIFILINI 800
             P       S F    E        N     ++ +++A+     R+   + P+      
Sbjct: 419 TWPD---SHHSLFKPSTEHSPQSSEFNRHFHHWLFDQVAQHCA--RNAIYILPLH----- 468

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
             + + D       Q  +         + L   E+V   + + +  LL + +  G  + +
Sbjct: 469 -PQCVFDTAF----QDTLEAHQSLCDLVHLQIPEAVFAAHTDTACALLKQWQNWGWHIEI 523

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMAKNI-----ETT--- 912
             F +  + L+YL     D+V  + SL+   T    A         + +           
Sbjct: 524 SQFASGSAPLNYLLNWSPDSVAIDASLLNPVTRDDQA--------GQRLQQLIGGLLSHV 575

Query: 913 --IIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             + A D+  + + + L R G  +IQ   +      
Sbjct: 576 PAVTALDVSSQEEAEMLFRFGITHIQGPFLGEAASL 611


>gi|84393555|ref|ZP_00992309.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84375834|gb|EAP92727.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 832

 Score =  257 bits (658), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 85/507 (16%), Positives = 191/507 (37%), Gaps = 44/507 (8%)

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN-SNGDILRYIGIAN 517
           +DR        +++  R      EFR              + P+ N     +     +  
Sbjct: 344 DDRQEILHHSLTYIAMRESDEINEFRCED-----FQRDSTVSPLLNLVRNAVADLDSMNT 398

Query: 518 DITEQKKSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            + ++       L  +++ D+ TG+PNR    +RL TIL            ++ + +  +
Sbjct: 399 QMEKKLHQQARRLTESYRIDSRTGLPNRIVLKERLNTILFSEH--------LLTLKLTNF 450

Query: 577 KKINDVLGIAVGDDVLVSLT----RRIGELLKFPDIL----ARLSGNRFGIILISENNSL 628
            ++N+  G  VGD +L+ L+     R+   +     +      +    + II  +     
Sbjct: 451 HQVNEKYGYQVGDQLLLDLSNHFVERLHLSVAKEAQVKVELFSIGVGEWAIIFNANVGCD 510

Query: 629 KIAD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSK---ITSSEMLKNAELAM 681
           KI      FA  +      P  L + +  ++ S+     +       +  E+L  A  A 
Sbjct: 511 KIEQRFVEFADDIEHINFEPYGLADID-YLSVSLCGGFASRCDFLTDSGDEILLKAIEAR 569

Query: 682 YHAKHRGGNH---VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
            +      +     +       R +++     +  A+ +  +     PI+     E++G 
Sbjct: 570 RYGVRNNTHITNAKDIQVSEEDRKEQLGWLSCVSRAILDQNIITYSQPIVASGTHEMIGQ 629

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           E L++        +   +F+ I  +  +   ++  M++     +   +           I
Sbjct: 630 ECLVRIMESDGTIVPPGKFLPIIADTHLYTRLSRHMIKNTIGYMADKQS-------PFSI 682

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++ +DLL ++  E ++  IS     P+R+ L   ES  + +  R   +    R +G  +
Sbjct: 683 NLSPQDLLSDKTLEVLETAISAMN-DPTRLGLEVLESEQIKDYGRMIEVCDHFRALGARI 741

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAK 916
            +DDFG+  S +  +  +    +K +GSL+    +   +  I   ++ + +      +A+
Sbjct: 742 IVDDFGSGYSNIDEIIKLEPQIIKLDGSLIRNIDKDQKQRNIASQLVRLCQVFNAQTVAE 801

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASP 943
            ++ +   +   +MG DY+Q  +   P
Sbjct: 802 FVHNQQVCEIAEQMGVDYLQGYYFGEP 828


>gi|332083555|gb|EGI88775.1| EAL domain protein [Shigella boydii 5216-82]
          Length = 528

 Score =  257 bits (658), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWLGEQGQIMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ I  ++++ + RD+ ++         ++ IN+++ D   + L   +     +
Sbjct: 325 AEKEGMIEQITDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARINQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + E+   ++   R+ G  + +DDF    S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVEKMTPIILAFRQAGYEVAIDDFSIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|320084616|emb|CBY94407.1| Uncharacterized protein yjcC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 312

 Score =  257 bits (658), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 31  MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHASCGGVEALMRWPQPDGRFI 90

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D I+W         +I +NI+   L+D+   +
Sbjct: 91  TPDIFITAAENEGMIIPLSRHLFELIAHDAINW---TVPDDFYISVNISPAHLMDDGFIQ 147

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 148 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 205

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 206 LQQLPVDYLKIDRTFIDTIDTSSDDVPVLNTIITLSQRLGLNVVAEGVSTQHQLRYILSH 265

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 266 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 300


>gi|237653253|ref|YP_002889567.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
 gi|237624500|gb|ACR01190.1| diguanylate cyclase with PAS/PAC sensor [Thauera sp. MZ1T]
          Length = 710

 Score =  257 bits (658), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 80/313 (25%), Positives = 141/313 (45%), Gaps = 2/313 (0%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           V L    V +         + I     R  LA+ G+   +WDWD+   R   +P    +L
Sbjct: 370 VQLGEIRVSRDFTERRRVREQIAERERRLMLALEGAELGLWDWDVPSGRANFSPMWCRML 429

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           G A+  +   + +W   +H +D  + R  L+  +   +   + E+R++     + W++  
Sbjct: 430 GYAAEELPANVSSWESLVHPDDWYDIRDSLEPHLRGTKDAYRAEYRLKHKSGHWVWVLAA 489

Query: 499 IRPM-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
            R +     G+ LR +GI  DI+++K   E +L  A  D LTG+ NR+ F++ +   L  
Sbjct: 490 GRVLDRGEGGEALRMVGIHQDISQRKAMEESLLQLATSDPLTGLWNRRHFVEVVRGELGR 549

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
              +      ++++D+D +K+IND  G A GD+VL   T  +   L+  D+ ARL G  F
Sbjct: 550 VRRNQ-APAALLLMDLDFFKRINDTHGHAAGDEVLRHFTATVSAQLREADVFARLGGEEF 608

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            ++L S +    +       R     P ++    +  + SIG     ++          A
Sbjct: 609 AVLLPSIDALGAVRAADRLRRVVADSPASVDSGALHYSVSIGATMLDAADEGYEAAYARA 668

Query: 678 ELAMYHAKHRGGN 690
           + A+Y AKH G N
Sbjct: 669 DEALYAAKHAGRN 681


>gi|77459145|ref|YP_348651.1| diguanylate phosphodiesterase [Pseudomonas fluorescens Pf0-1]
 gi|77383148|gb|ABA74661.1| putative EAL domain signalling protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 511

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 108/250 (43%), Gaps = 3/250 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            ++  A+E  E    + P++    ++  G E L++W+HPK G +    F+  AE   +I 
Sbjct: 263 HEMLRALEAGEFIPYFQPVVHGDSKQWSGTEVLMRWNHPKEGLVRPDLFIPFAEHSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++++ A  +          P  I INI +    D EL E  +  +S        +
Sbjct: 323 PMTRALMQQTAVVLGPL-SSTYTAPFHIGINITASHCNDLELVEDCREFLSAFQPGSISL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   + +  L  +LR +G+ + +DDFGT  S L YL     D +K + + +
Sbjct: 382 VLELTERELIEPSDITHQLFAQLRAMGVKIAIDDFGTGHSSLGYLRTFNVDFLKIDQTFV 441

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
               +      IL SII ++  ++  I+A+ +  +     L     +++Q      P+  
Sbjct: 442 AMIDKDALSRHILDSIIELSTKLDLGIVAEGVETQAQCDYLAAHHVNFLQGYLFGKPMPA 501

Query: 947 NSILKLLKER 956
              ++ L   
Sbjct: 502 ADFIEALTHH 511


>gi|300718862|ref|YP_003743665.1| signaling protein [Erwinia billingiae Eb661]
 gi|299064698|emb|CAX61818.1| Putative signaling protein [Erwinia billingiae Eb661]
          Length = 532

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 126/266 (47%), Gaps = 5/266 (1%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
               +++   +V I++ L  A++  E  + Y P+  +   +  G EAL++W  P      
Sbjct: 256 MMVTNNWLKRKVSIRDQLKRAIQRREFSVNYQPVYNVETGKASGAEALMRWKLPNGRWAR 315

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  MI  +   +L+ IA D+  W+     P   I +NIA + +   +    
Sbjct: 316 PDLFIQAAEEEGMIVPLTQSLLQNIAEDMRDWQ---IPPNFHIGLNIAGEHIQHADFMAD 372

Query: 814 MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           ++   +K  +    I L  +E  ++ + +     L +LR+ GI + +DDFGT    LSYL
Sbjct: 373 IREFAAKIAHHQPNITLELTERSLISDGDDVISKLQQLRREGIKIAIDDFGTGHCSLSYL 432

Query: 874 GYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
              P D +K +   +      E    +L +II ++  ++ +I+A+ +   + ++ L + G
Sbjct: 433 QTFPLDYLKIDRGFVNAIESVEGEAPVLDAIIMLSHKLKLSIVAEGVETPLQLEYLKKRG 492

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
             +IQ    A P+  ++++  ++E+ 
Sbjct: 493 VIFIQGYLYARPMTGSALMAWMEEQN 518


>gi|300993090|ref|ZP_07180192.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 45-1]
 gi|301047029|ref|ZP_07194136.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 185-1]
 gi|300301039|gb|EFJ57424.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 185-1]
 gi|300406701|gb|EFJ90239.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 45-1]
 gi|307556222|gb|ADN48997.1| putative signal transduction protein [Escherichia coli ABU 83972]
 gi|315291569|gb|EFU50929.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 153-1]
          Length = 517

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 119/255 (46%), Gaps = 5/255 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLL 953
             A  +     ++ +
Sbjct: 502 FFAKAMPPQVFMQWM 516


>gi|323975304|gb|EGB70407.1| EAL domain-containing protein [Escherichia coli TW10509]
          Length = 528

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNLAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEDQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|34496463|ref|NP_900678.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34102316|gb|AAQ58682.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 396

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 121/258 (46%), Gaps = 5/258 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +++ +A+E  ++   Y P + L D  + G E L +W HP  G I  S F+ + E+    
Sbjct: 138 ADEVRVALEKGQIIPYYQPKVNLADGRVKGAEMLARWQHPDLGLIPPSRFIPVIEDNGWA 197

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             + + ML +       W        + + +N+++  L  +EL + ++  +  +      
Sbjct: 198 TELTMLMLRQGLTQWQEWARHGLR--LPLSVNLSALSLRGDELVDEIECYVRGSHVPARF 255

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I    +E+ ++ N  ++     RLR  G+ L++DDFGT  + L  L   PF  +K + SL
Sbjct: 256 IIFEVTETAIVDNLAQAIGCAVRLRLAGLGLSIDDFGTGFATLQQLTRFPFTELKIDQSL 315

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +TG ++K    A+  SII MA+ ++   +A+ I    D + +   GC   Q  + A PL 
Sbjct: 316 VTGISDKPHLQAVFNSIIEMARRLQLATVAEGIETAEDYQLMAERGCQLGQGYYFARPLP 375

Query: 946 FNSILKLLKERFPLVKNT 963
             + L+    + P++   
Sbjct: 376 AAAFLEW-TRQPPVLPTA 392


>gi|213648671|ref|ZP_03378724.1| hypothetical protein SentesTy_16144 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 529

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 255 FMWSRSRQAYYSPRRLLQWAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 314

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+++ D L + L   +
Sbjct: 315 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLSAADFLSSRLIVMI 372

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 373 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 431

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 432 SLNVDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 491

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 492 QYCQGWHFAKALPPQEFIVWLQQ 514


>gi|78048579|ref|YP_364754.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037009|emb|CAJ24731.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 427

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 161 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 220

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A + +   SP+ 
Sbjct: 221 HALTQQVIDKAIAQLVDWRGEGFD--LSLALNLSPRLLGEDHFLEELCAKLGENGLSPAD 278

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 279 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 337

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 338 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 397

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 398 GPMLSEWWREH 408


>gi|87122681|ref|ZP_01078557.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EALdomains)
           with PAS/PAC sensor(s) [Marinomonas sp. MED121]
 gi|86162059|gb|EAQ63348.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &
           EALdomains) with PAS/PAC sensor(s) [Marinomonas sp.
           MED121]
          Length = 436

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 3/310 (0%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
               Q +       Q +    ER   A        WDWD+   +   + +   I G+ SG
Sbjct: 124 LGTNQDITDQKRAEQALRESEERLKAAQSLVNLGCWDWDLKTGKQVWSNETYRIFGIDSG 183

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
            +      +   IH +D         + +        +EFR+   + +  ++   +   +
Sbjct: 184 -IEPSRALFENLIHPDDLAQTLAATQAGIK-SGVDFNFEFRIILPNGKERYISAHVGIKT 241

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           +  G+ +R +G   DITEQK+    I+  A+ D LT +PNR      L  +L       +
Sbjct: 242 DELGNSIRLLGTNQDITEQKEIELRIIHQAYHDPLTQLPNRMKLNQELECLL-QPGQASH 300

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
               ++ +D+D +K+IND  G   GD VL  + +R+    +  D++AR+ G+ F I+L S
Sbjct: 301 HPFAILWVDLDYFKQINDNHGHLAGDAVLQDVAKRLKAQTQQGDLVARVGGDEFIIMLKS 360

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
             +  K+   A  + K    PI      + V  SIG A +         + + A++A+Y 
Sbjct: 361 AGDVQKLNACAQNILKEFQHPILFENLLLKVGTSIGGAIYPLHGENVESLFRAADIALYQ 420

Query: 684 AKHRGGNHVE 693
            K  G N  +
Sbjct: 421 VKEGGRNAYQ 430



 Score = 94.6 bits (234), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 2/137 (1%)

Query: 391 LATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIR 450
                  + +    +R   A        WDWD++ +    +     ILG+ S  +     
Sbjct: 4   REEEALLKKLKRSEQRLIAAYKLVALGTWDWDLITNEQAWSDKTYEILGVDSN-VVVTRE 62

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
            +   +H +D D  R  L+  +      + Y FR+   + +  ++   +    +  G  +
Sbjct: 63  LFESLLHPDDLDYVREKLEQGISQE-DDITYGFRIIRPNGEERYIYSHLTFEKDEQGKKV 121

Query: 511 RYIGIANDITEQKKSLE 527
           R +G   DIT+QK++ +
Sbjct: 122 RVLGTNQDITDQKRAEQ 138


>gi|218672559|ref|ZP_03522228.1| putative sensory box/GGDEF family protein [Rhizobium etli GR56]
          Length = 335

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 144/317 (45%), Gaps = 12/317 (3%)

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +++ +   I   +  +   ASIG +        +  +L  ++LA+Y AK  G N +E F 
Sbjct: 5   VQRRLRKKIRFGQEMLQSGASIGVSWS--GDRRARNLLAESDLALYQAKQLGRNRIEFFT 62

Query: 697 VSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
                    +  + E+L L +E  E+   Y   +     +++G EAL +W HP  G ++ 
Sbjct: 63  RQLQEDLRSKRRLVEELKLGLERGEIIPYYQVQLCATTRQVIGFEALARWKHPDKGVLAP 122

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ IA+E  +   I+  +L+R+  D   W+      P  I +NI++  L D  L    
Sbjct: 123 GIFLKIADEHGLAAEIDAAILKRVLEDRQFWQLHGLAVP-RIAVNISASRLADPALLGK- 180

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
              + K    P  I     E++ + + +      +  ++++GI + +DDFG+  + L  L
Sbjct: 181 ---LKKLDIPPGAIVFELVETIFLDDSDETLLDHINDIKQLGIDIEIDDFGSGHASLIGL 237

Query: 874 GYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +    +K +  L+    S+E++  ++ SI+ +AK ++  +IA+ I  E     L ++G
Sbjct: 238 VKLRPKRLKIDRQLVAEVVSSEEQRRVVGSIVEIAKALDVEVIAEGIETEAHATVLAQLG 297

Query: 932 CDYIQDSHVASPLGFNS 948
           CD +Q      P     
Sbjct: 298 CDGLQGYLFGYPAPATE 314


>gi|166711345|ref|ZP_02242552.1| response regulator [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 417

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 151 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 210

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A +S    SP+ 
Sbjct: 211 HALTQQVIDKAIAQLVDWRAEGFD--LSLALNLSPRLLGEDHFLEELCAKLSDNGLSPAD 268

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 269 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 327

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 328 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 387

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 388 GPMLSEWWREH 398


>gi|330502902|ref|YP_004379771.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
 gi|328917187|gb|AEB58018.1| diguanylate cyclase [Pseudomonas mendocina NK-01]
          Length = 644

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 93/672 (13%), Positives = 192/672 (28%), Gaps = 86/672 (12%)

Query: 32  IEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRRIEVS---ASSIRHRGDW 88
            + + +      +        + +   +        +   + +       +        W
Sbjct: 43  ADSLPLPIGQTQILPGPYLSFWEDPSGEASFSDIRALPDSAWQAVDRRDASFGYSGSAYW 102

Query: 89  AVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSEGFSLDRIPNSDSDV 148
               + N     L  +++V +  L     +  D      +     +     R        
Sbjct: 103 LRLDVHNPHSRSLGWVLLVGNPLLDYLDAYGLDGER---VYRAGDQRPFSWRWVEHRQLA 159

Query: 149 FRITINPGAVVTFIMEISTPNLPQIY--LWEPNFYKDTVNSFTLYRGIIIGVASLLAIFL 206
             + +  G      + + T     +   L     +     S  L +G+  G    + I+ 
Sbjct: 160 LPLQVEAGEQRRIWLRMQTAGSANLSASLMTHEAFDHQEQSSLLLQGLFFGALIAMLIYN 219

Query: 207 TIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKL-VNLPSGELLIWRACSEIALSSSL 265
              + + R    +           Y  I  GF  +           +    S    +   
Sbjct: 220 LSIFCITRDRNYLWYSLFVGSFSLYQFIQLGFALQWLWPNALTWHQLSFPLSSALATLFG 279

Query: 266 IIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYF 325
           I F +  L  +       + T +  AC                                 
Sbjct: 280 IHFTYSVLELDEAAKPYRWTTHTLKAC-----------------------------AWLV 310

Query: 326 IIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFT 385
           +       Y  A   +    ++ I        IT          A +  L   V++    
Sbjct: 311 LGMALFGPYAPA---LIGSFVLVIACAVAAFIITLLRWRSGYAAARLFALGWFVLITAS- 366

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
                                 +  + G+G +                  ++L L +  +
Sbjct: 367 ---------------------LASILTGTGLLP----------------YSLLTLHAQQV 389

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G I   +  I +      R    +    +   +  E R+R    +   +  +I    + 
Sbjct: 390 GGLIEMTVFSIALA--ARIRQAQQAERQAQAKLIDQERRLRNEQAKHLELQTQIS--ESL 445

Query: 506 NGDILRYIGIAND-ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
              +        D + +   +   +     +D LTG+ NRQ+  + L      +      
Sbjct: 446 EQRVQERTATLRDTLQQLSNANLRLAELNRRDGLTGLFNRQTLSEELARACARAERSRQ- 504

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
              ++++D+D +K++ND  G   GD  L    +RI + L+  D+LAR  G  F  +L S 
Sbjct: 505 SLAILMMDLDHFKQVNDRHGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEFVALLDST 564

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGF-ASWTSSKITSSEMLKNAELAMYH 683
           + +  +             P +  ++ I ++ SIG  A   S        L+ A+ A+Y 
Sbjct: 565 DLTGALDLAEQLREDIARTPCSYQQQSIPLSLSIGLHAGVPSDPCCGEHWLELADRALYR 624

Query: 684 AKHRGGNHVESF 695
           AK  G N V S+
Sbjct: 625 AKSDGRNRVVSY 636


>gi|330011708|ref|ZP_08307151.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
 gi|328534091|gb|EGF60730.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
          Length = 519

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ +  + + Y PII L D +I G EAL +W  P    +S   F+ +AE+  +I 
Sbjct: 273 NSMLDALNSEAIQVYYQPIISLQDGKIAGAEALARWQQPDGTFLSPDIFIPLAEQTGLIT 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ +I  D+  W  Q   P + I IN++  DL    L   +   +     +  +I
Sbjct: 333 QLTEDIVRKIFTDLGPWLRQ--RPEVHISINLSVDDLRSPTLPTLLHDQLQHWGIAAEQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   + +PE +  ++   R+ G  +++DDFGT  S LSYL  +  DT+K + S +
Sbjct: 391 ILEITERGFV-DPETTMPVIAHYRQAGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   +   II MAK +    +A+ +  E     L + G  Y Q    +  L    
Sbjct: 450 DTL--EYRPLTPHIIEMAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSKALPKEQ 507

Query: 949 ILKL 952
            +  
Sbjct: 508 FILW 511


>gi|26250864|ref|NP_756904.1| hypothetical protein c5052 [Escherichia coli CFT073]
 gi|227886916|ref|ZP_04004721.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli 83972]
 gi|26111295|gb|AAN83478.1|AE016770_278 Hypothetical protein yjcC [Escherichia coli CFT073]
 gi|227836057|gb|EEJ46523.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli 83972]
          Length = 520

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 119/255 (46%), Gaps = 5/255 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 268 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 327

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI+ +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 328 AEKEGMIEQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 385

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 386 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 444

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 445 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 504

Query: 939 HVASPLGFNSILKLL 953
             A  +     ++ +
Sbjct: 505 FFAKAMPPQVFMQWM 519


>gi|330981342|gb|EGH79445.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 530

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 5/280 (1%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++   +   A  DNLTG+PNR    +R+   +  +         +M +D+D +K +ND  
Sbjct: 254 EANLELTHLALHDNLTGLPNRALLTERIDRAMKRAVETGGC-FALMFMDLDGFKPVNDAF 312

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G  +GD +L  +  R+   L   D LAR+ G+ F  +L+   ++  +   A      +  
Sbjct: 313 GHHIGDLLLRQVALRLRNSLHRRDTLARVGGDEFV-LLVELQHAEDVLAVARRQVSEVGT 371

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR--VSSFR 701
           P N+ E ++ ++ SIG   +  +  T  E+L NA+ AMYH K  G N    F   ++S  
Sbjct: 372 PFNIGEHQLQISLSIGICMYPGNGSTQHELLINADAAMYHTKAAGKNGYSFFDASMNSNA 431

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++ + +DL  A+++ +  + Y P    +    VG EAL++W+HP+ G +    F+ +A
Sbjct: 432 RNQLQMSQDLHRAIKHRQFCIYYQPKFDAVTGLPVGAEALLRWNHPEQGILGPDLFISMA 491

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           E+  +I  I  ++L+   R +  W  Q       I +N++
Sbjct: 492 EKTGLIIQIGEWVLDEACRQMREWYTQ-GYSHWRIAVNLS 530


>gi|238757380|ref|ZP_04618566.1| hypothetical protein yaldo0001_33000 [Yersinia aldovae ATCC 35236]
 gi|238704419|gb|EEP96950.1| hypothetical protein yaldo0001_33000 [Yersinia aldovae ATCC 35236]
          Length = 504

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 122/283 (43%), Gaps = 8/283 (2%)

Query: 671 SEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL 730
            ++L  A   M          V      +     +  + DL  A+EN +  L       +
Sbjct: 218 QQLLAEAYTDMSRV--SARFPVAELANRTLFKTLLEQENDLIQAIENGDFTLFLQSQWDM 275

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
            ++ ++G EAL++W  P     S SEF+   E+  M+  +  ++L    R +  W+ Q  
Sbjct: 276 KEQRLIGAEALLRWRQPDGSYRSPSEFIPQIEQSGMMVPLGNWVLGEACRILADWKAQG- 334

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              + + +NI+   + +++    + ++I +     +R+ L  +E+  + + + +  L G 
Sbjct: 335 -VTLTLAVNISGLQMQNDQFLPYLTSVIERYDIDANRLLLEITETARIPDLDNALTLFGE 393

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGY---IPFDTVKFNGSLMTGSTEKRIAILRSIIPMAK 907
           L+ +G+S+ LDDFG   S L YL +   +P D +K + S +    E   A+ R I  ++ 
Sbjct: 394 LQSLGLSIALDDFGMGYSSLHYLNHLKGLPIDMIKLDKSFVKHLPEDD-AMARIISSISD 452

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
            ++  ++A+ +  E   + L        Q    A PL      
Sbjct: 453 VLKLRVMAEGVETEEQRQWLLAHDIQCGQGFLFAPPLSRAEFE 495


>gi|271500155|ref|YP_003333180.1| diguanylate phosphodiesterase [Dickeya dadantii Ech586]
 gi|270343710|gb|ACZ76475.1| diguanylate phosphodiesterase [Dickeya dadantii Ech586]
          Length = 501

 Score =  257 bits (657), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 112/249 (44%), Gaps = 5/249 (2%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+EN E+   Y P+I     EI G+E L +W HPK G IS   F+ + E+  +I  +
Sbjct: 253 IRRAIENQEVLPYYQPVIANESREIYGVEVLARWYHPKSGFISPDVFIPLCEQSGLIIPL 312

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++  + RD+    D      + I INI+++    ++     Q  I+        + +
Sbjct: 313 TRTLMSSVVRDLTPHLDTLPD-NLHIAINISAQHCQSDDFITDCQNFITAFGDKNVHLMI 371

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E   +     +     +L   G+ + LDDFGT  S   YL  +  + +K + S ++ 
Sbjct: 372 EITEREKVDITPDTIAFFKKLSDAGVLIALDDFGTGYSNFDYLRKLHVNVIKIDQSFVSM 431

Query: 891 STEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             E       ++  +I +A+ ++   IA+ +  E   + L+R   +++Q    + PL F+
Sbjct: 432 IDENDPQSSTLVNCVIDLAQQMKLMTIAEGVETEYQAEFLSRKQINFMQGYFFSRPLPFD 491

Query: 948 SILK-LLKE 955
            + +  L  
Sbjct: 492 ELARTWLNN 500


>gi|220935033|ref|YP_002513932.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996343|gb|ACL72945.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 882

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 141/341 (41%), Gaps = 8/341 (2%)

Query: 354 LWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG 413
           + +      D  +     V  +   V      +   +       + +       +     
Sbjct: 545 ISIPPKGGPDGTLWFEGRVMAMGARVFDRPAVI--WLAMNVTARKRLEESMRLNARVFED 602

Query: 414 SGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP-YIHINDRDNFRTILDSFV 472
           S + ++  D     ++       I G  +  + G     L   +H  D   ++++ +  +
Sbjct: 603 SNEGIFITDAGNRIISANTAFTRITGYEAAEVIGRNPGLLSSGMH--DEAFYQSLWEQVL 660

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
            +  GR + E   R  D + +   + I  + +  G I  +I I +DIT +K++   I   
Sbjct: 661 LH--GRWEGEIWNRRKDGRVYPQNLSISVVRDGEGRISHHIAIFSDITRRKEAEAQIRHM 718

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  DNLTG+ NR    DRLT  ++ +  D N    ++ ID+D +K +ND  G   GD VL
Sbjct: 719 ALHDNLTGLANRTLLRDRLTQAIEQARRDRN-SLALLFIDLDDFKPVNDTHGHEAGDRVL 777

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             + +R+   ++  D +AR+ G+ F I+L +          A  +  S++ PI L  +  
Sbjct: 778 KEVAQRLRAAVRRVDTVARMGGDEFVILLQALEQEDMAIQVAEKIIDSLSRPIQLNGQTC 837

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
            + AS+G A           +++ A+ A+Y AK  G N  +
Sbjct: 838 LLGASVGIALHPRHGEDHDGLMRAADQALYQAKSAGKNRYQ 878



 Score = 63.0 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 7/161 (4%)

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVT 429
             VGGL  ++ LI               Q +     +    +    D             
Sbjct: 302 TPVGGLWGLIWLITLLTGALAWYLSLQGQRLRQSEVKYRALMENLSDGACIVQ-DGWLRY 360

Query: 430 TTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVG--YRRGRLQYEFRVRA 487
             P    I G     +     +   ++   DRD    ++   +    R G L+ E R+R 
Sbjct: 361 VNPRFRDIFGHDEELLLSHQLS--DFLVAEDRDQLARLMSRVIADPARPGPLETELRIRT 418

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEG 528
            D    ++ I +  M+  +G     +   +DI ++K+    
Sbjct: 419 GDAGHSYVRINLSAMAWEDGPA--ILATVSDIDDRKRLANQ 457


>gi|192361518|ref|YP_001981684.1| response regulator [Cellvibrio japonicus Ueda107]
 gi|190687683|gb|ACE85361.1| response regulator [Cellvibrio japonicus Ueda107]
          Length = 433

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 114/250 (45%), Gaps = 4/250 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
            L  A+    +   Y P + L   ++ G EAL +W        S +EF+  AE    I  
Sbjct: 166 QLQQAIAQRRIIPYYQPKLNLQQPQLAGWEALARWPLANGFGYSPAEFIPQAEREGKIAE 225

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           + L +LE++  DI +W+ Q       + IN+++  L   +L   +   ++    +P ++ 
Sbjct: 226 LTLSLLEQVLEDIQTWQAQGIHTS--VAINLSASSLTQVDLANDIIQRVAAAGINPRQLS 283

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
              +ES ++ +   +   + RLR  G   ++DD+GT  S +  L   PF  +K + S + 
Sbjct: 284 FEMTESALIMDLPAALATISRLRLKGFGFSIDDYGTGFSSMQQLSRFPFTELKIDRSFVQ 343

Query: 890 GSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
            +  ++    IL+S + M + +  T +A+ +    +++ L  +GC  +Q   +A P+   
Sbjct: 344 EAPRQQHVREILQSAVDMGRRMGITSVAEGVETLEELQLLRAIGCRQVQGFLIAHPMPAA 403

Query: 948 SILKLLKERF 957
            I   L +  
Sbjct: 404 QIPLWLAQEL 413


>gi|269139639|ref|YP_003296340.1| hypothetical protein ETAE_2294 [Edwardsiella tarda EIB202]
 gi|267985300|gb|ACY85129.1| hypothetical protein ETAE_2294 [Edwardsiella tarda EIB202]
 gi|304559511|gb|ADM42175.1| Rtn protein [Edwardsiella tarda FL6-60]
          Length = 519

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   +      P++   DE + G E L++W HP+ G I  + F+ +AE+  +I  +
Sbjct: 266 LREALRRHQFIPYIQPVVNGADESLSGCEILMRWQHPQMGLIPPNNFIPLAEDSGLIVPM 325

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++                   NI++    D  L E  +  I     +P R+ L
Sbjct: 326 TRDIMQQVSDYFAPRCHSLPAH-FHFGFNISASHFNDLSLVEECRRFIDAFAANPIRLVL 384

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E   + + E +  +   LR +G+ L LDDFGT  S L+YL    FD +K + S +  
Sbjct: 385 ELTERQRVPDGELTEQIFHELRALGVLLALDDFGTGHSSLAYLQRYHFDIIKIDQSFVRM 444

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +AK ++   +A+ +  E  ++ L     DY+Q      PL    
Sbjct: 445 IGSDMLSGHIVDTVIALAKRLDMVTLAEGVETEAQLQHLRAYRLDYLQGYLFGRPLPLPD 504

Query: 949 ILK-LLKE 955
             +  L  
Sbjct: 505 FTREWLTS 512


>gi|320193429|gb|EFW68066.1| hypothetical protein EcoM_04301 [Escherichia coli WV_060327]
          Length = 517

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 118/255 (46%), Gaps = 5/255 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKEGMIGQVTDYVIDNVFRDLGAYLAT--HTDRYVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   RK G  + +DDFG   S L  L  +  D 
Sbjct: 383 HAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLL 953
             A  +     ++ +
Sbjct: 502 FFAKAMPPQVFMQWM 516


>gi|84385752|ref|ZP_00988782.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           splendidus 12B01]
 gi|84379068|gb|EAP95921.1| putative c-di-GMP phosphodiesterase A-related protein [Vibrio
           splendidus 12B01]
          Length = 537

 Score =  257 bits (656), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 131/264 (49%), Gaps = 7/264 (2%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
              +  +  ++  L  A++N  L++   PI+     EIVG E+L++W+ P  GN+S + F
Sbjct: 255 KHKKQSQRSLEYSLSSALKNKHLHVHMQPIVNQNTTEIVGCESLLRWNDPIEGNVSPAIF 314

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE L +I+ +  F+L ++   + S +D       +I +NI+   + ++     + ++
Sbjct: 315 IPLAESLGLIEELTYFVLRKVLVTLKSNQDVF--ESKYISVNISRNVVSNSNFSNKVISI 372

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERS--RLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             +      ++    +E     + +    R  L +L  +G+ + +DDFGT  + L ++  
Sbjct: 373 FKRHPEILKQVVFEVTEDGECSDADMVKIRGNLTKLSNMGVRVAIDDFGTGYAGLDFVRQ 432

Query: 876 IPFDTVKFNGSLMTGSTEKRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            PF  +K +   +   +++      +L S++ +++ +   +I + +  E  +  L+++G 
Sbjct: 433 FPFSILKIDRVFVKNISDESSLGIPLLESMLQLSRTLGMQVIVEGVEYESQVNILSKLGV 492

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           DYIQ  +   P+  +  + LL+++
Sbjct: 493 DYIQGFYFYKPMPISLTISLLRQQ 516


>gi|188575608|ref|YP_001912537.1| Response regulator with EAL domain [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520060|gb|ACD58005.1| Response regulator with EAL domain [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 417

 Score =  257 bits (656), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+   E+ + Y P + L D  + G+EAL +W  P+   I    F+ +AE   +I
Sbjct: 151 ASRLDRAMRRGEIRVAYQPKLDLKDGRLRGVEALARWRRPQGDMIGPDRFIPLAEREGLI 210

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++++    ++ WR +     + + +N++ + L ++   E + A +S    SP+ 
Sbjct: 211 HALTQQVIDKAIAQLLDWRAEGFD--LSLALNLSPRLLGEDHFLEELCAKLSDNGLSPAD 268

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES ++  P  +  +L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 269 LVLELTESAIVE-PANALSMLARLRLHGFGLSIDDYGTGFSSLQRLASIPFTELKLDRSF 327

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +     +  +  +L S + +A  +E T +A+ +    D + L  +GCD  Q   +ASP+ 
Sbjct: 328 VHAAHRSRSQRTVLESTLELAHRLELTAVAEGVETPDDWRLLRELGCDLAQGYLMASPMP 387

Query: 946 FNSILKLLKER 956
              + +  +E 
Sbjct: 388 GPMLSEWWREH 398


>gi|237745467|ref|ZP_04575947.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229376818|gb|EEO26909.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 663

 Score =  257 bits (656), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 171/435 (39%), Gaps = 22/435 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           +Q+++LE I   A+ D  TG+PNR  F  RL  +++  +  +     +  I+I    +IN
Sbjct: 225 QQEETLERIRNEAYTDTTTGLPNRTYFTMRLQQMIESGSRFE--LGALFFIEISHLAEIN 282

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
              G   GD +L S+ + I + +        + ARLSG  F + +         A     
Sbjct: 283 KKSGHMAGDTLLKSVAQLIRQQVTRFSVNEVLTARLSGTTFAVAISGMTEKQAEAFA--- 339

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSS-KITSSEMLKNAELAMYHAKHRGGNHVESF 695
                    +L  + +T  + +G   +      + SE+L  A++A+  A+ +G N     
Sbjct: 340 -LAFAREMASLHGKGLTPFSEVGHIGFAFHWNQSLSELLSEADMALRAAQIKGPNTTHYH 398

Query: 696 RVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE-EIVGLEALIQWDHPKWG 750
           +                  L   +E     L+   ++   D   +   E L++  + +  
Sbjct: 399 QNHLISEFDTLTATQWIALLNRVIEEKRFTLLVQAVMNPDDPPSVKHHEVLLRIANDENK 458

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            I +S F+ +     + KA++  ++  +   +    D+       I +N+    + D E 
Sbjct: 459 LIPASLFIPMIHHYGLTKALDKMIVATVLDLL----DRPENKMKKIAVNLMPASVSDPEF 514

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLL 870
              + + +++      RI     +  +  N   ++     +   G  + +D FG   + L
Sbjct: 515 VNWLSSELARKPALAKRILFELDDYGIAQNLHAAQTFQQAVSSSGAGIGIDHFGRNVTTL 574

Query: 871 SYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELT 928
           S +G +    +K +GS +    +       +  ++ MA   +  +IA+ I  E +++ + 
Sbjct: 575 SSIGKLTPVYLKIDGSFIRLIDKNRDNQRFVEILVNMAHAQDICVIAESIENEKEMELVK 634

Query: 929 RMGCDYIQDSHVASP 943
            +  D +Q   +  P
Sbjct: 635 NLHVDGLQGYALHRP 649


>gi|167991462|ref|ZP_02572561.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205330188|gb|EDZ16952.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|332991080|gb|AEF10063.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 533

 Score =  257 bits (656), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+A+ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLAAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNIDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|304309834|ref|YP_003809432.1| response regulator, CheY-like [gamma proteobacterium HdN1]
 gi|301795567|emb|CBL43765.1| response regulator, CheY-like [gamma proteobacterium HdN1]
          Length = 402

 Score =  257 bits (656), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 4/249 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +   A+ + +    + P + L    + G+E LI+W HP+ G +    F+   E    I 
Sbjct: 149 REFSEALMHHQFCAHFQPKVTLDSGTLKGVEVLIRWQHPRRGLVMPGHFIPAMEGTPFIH 208

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L+     +  W  +  +  I   IN+++  L      + +   I  +   PS I
Sbjct: 209 YVTFEVLDLTLAQMKDWLARGLV--ITASINLSASSLARPGFIDTLLERIKTSKVPPSLI 266

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               +E+ +M +   S   L RLR  G+ L++DDFGT  S +  L   PF  +K + + +
Sbjct: 267 ICEITETAIMTDLGVSLGALARLRLHGVGLSIDDFGTGFSSMQQLSQAPFTELKIDRAFV 326

Query: 889 TGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            G+ E+     +L S I MA+ +   ++A+ +    D   L  + C+  Q  H+A P+  
Sbjct: 327 HGAHERTHLRVMLESTIEMARRLNLNVVAEGVETAADWTLLRALSCEMAQGYHIARPMPS 386

Query: 947 NSILKLLKE 955
           ++ L+  ++
Sbjct: 387 DTFLEWAQQ 395


>gi|262041470|ref|ZP_06014671.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041190|gb|EEW42260.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 519

 Score =  257 bits (656), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ +  + + Y PII L D +I G EAL +W  P    +S   F+ +AE+  +I 
Sbjct: 273 NSMLDALNSEAIQVHYQPIISLQDGKIAGAEALARWQQPDGTFLSPDIFIPLAEQTGLIT 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ +I  D+  W  Q   P + I IN++  DL    L   +   +     +  +I
Sbjct: 333 QLTEDIVRKIFADLGPWLRQ--RPEVHISINLSVDDLRSPTLPTLLHNQLQHWGIAAEQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   + +PE +  ++   R+ G  +++DDFGT  S LSYL  +  DT+K + S +
Sbjct: 391 ILEITERGFV-DPETTMPVIAHYRQAGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   +   II MAK +    +A+ +  E     L + G  Y Q    +  L    
Sbjct: 450 DTL--EYRPLTPHIIEMAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSKALPKEQ 507

Query: 949 ILKL 952
            +  
Sbjct: 508 FILW 511


>gi|152968998|ref|YP_001334107.1| hypothetical protein KPN_00425 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953847|gb|ABR75877.1| hypothetical protein KPN_00425 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 519

 Score =  257 bits (656), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ +  + + Y PII L D +I G EAL +W  P    +S   F+ +AE+  +I 
Sbjct: 273 NSMLDALNSEAIQVHYQPIISLQDGKIAGAEALARWQQPDGTFLSPDIFIPLAEQTGLIT 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ +I  D+  W  Q   P + I IN++  DL    L   +   +     +  +I
Sbjct: 333 QLTEDIVRKIFADLGPWLRQ--RPEVHISINLSVDDLRSPTLPTLLHNQLQHWGIAAEQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   + +PE +  ++   R+ G  +++DDFGT  S LSYL  +  DT+K + S +
Sbjct: 391 ILEITERGFV-DPETTMPVIAHYRQAGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   +   II MAK +    +A+ +  E     L + G  Y Q    +  L    
Sbjct: 450 DTL--EYRPLTPHIIEMAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSKALPKEQ 507

Query: 949 ILKL 952
            +  
Sbjct: 508 FILW 511


>gi|144901304|emb|CAM78168.1| Sensory box protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 623

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/530 (16%), Positives = 186/530 (35%), Gaps = 24/530 (4%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D++ + D     +        +LG  +  + G   +    I   D       L +     
Sbjct: 71  DVLLEIDQDGQVLFAVGAARALLGWPARVLSGMRLD--DLIAPADHGRAAAALATMARGE 128

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R R      +R  D      ++      + +  +L  +G +   +     LE  L  +  
Sbjct: 129 RVR-NSSVSLRKQDGSVSPGLLSGYRSPDESTHLLVVLGHS---SCSCAPLERRLAQS-- 182

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
               G+ ++ SF  R   +LD      +    + +ID+ +  ++    G    + ++ ++
Sbjct: 183 ----GLLDQDSFQARTRHLLD--QDSSDAPYVLTMIDLPEIPRLRQQAGTEQTESMVAAI 236

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              + +     D   + +   +G++  S      I+     +       +      +  T
Sbjct: 237 GAYLRDHSIGGDTAGQFNDTTYGLVHDSNLVRDDISAA---INDIARQTVPDGPPMLAKT 293

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
            SI      +S   ++  L +A     +    G     S  +    SD +     L   +
Sbjct: 294 HSITLDVADASPEEAAAALTHAVTGFINDGGGGTLAALSADLQPRMSDAMTRMRALRRLI 353

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
           E  + ++V+ PI+ L    I  +E L++          +  F   AE + +    +L + 
Sbjct: 354 ERGDFHMVFQPIVDLWTNTIQHMECLVRLGDSDATPFDTVTF---AESMGLAGQFDLAVC 410

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
           ER+   +         P +   IN++ + L   +    ++ L+        R+    +ES
Sbjct: 411 ERMFAMMRQGPAS--DPALKFAINLSGRTLTSPDSTSRLRRLLDGAADLRGRVSFEITES 468

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TE 893
             MG       LL  +R  G  + LDDFG   +   YL  +  D VK +G  +  +  + 
Sbjct: 469 AAMGELAAVNALLQEIRAKGFPVCLDDFGAGAAAFHYLRELKVDHVKIDGLYIKNALRSG 528

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           + ++ +++I+ +   +  +  A+ +        L  +     Q  +   P
Sbjct: 529 ESVSFIKAIVGLCAELGISTTAECVEDPETANLLKLLKVKRGQGWYFGKP 578


>gi|16767514|ref|NP_463129.1| diguanylate cyclase/phosphodiesterase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197262864|ref|ZP_03162938.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16422824|gb|AAL23088.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|197241119|gb|EDY23739.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|261249363|emb|CBG27226.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996580|gb|ACY91465.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160756|emb|CBW20287.1| putative exported protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915368|dbj|BAJ39342.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223135|gb|EFX48205.1| hypothetical protein SEE_03891 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323132604|gb|ADX20034.1| putative diguanylate cyclase/phosphodiesterase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 533

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+A+ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLAAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNIDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|88800529|ref|ZP_01116092.1| GGDEF family protein [Reinekea sp. MED297]
 gi|88776760|gb|EAR07972.1| GGDEF family protein [Reinekea sp. MED297]
          Length = 643

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 172/445 (38%), Gaps = 20/445 (4%)

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           IT     L  +      D LTG+PN+    D                  V+   I  Y+ 
Sbjct: 193 ITYMLMMLFYLRRQNRFDRLTGLPNQNYLNDE---------RTIRPGTHVIACQILNYRA 243

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +   L  +  D +  ++ +R+ ++L   D L  +S + F +I+          D+ + + 
Sbjct: 244 LQSELSPSDTDILTQTVGKRLTKVLTPGDQLIAISQDEF-MIVSDGQALRTTDDWQLLLS 302

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES---- 694
           ++ A   +  + +  +  +IG    +          + A LA   A  +    +      
Sbjct: 303 QAYAFTWSYKDSQFPIRLAIGIDEPSDQSSAWRHRYQKALLAKQRAVEKRQPVIVHTDTL 362

Query: 695 -FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNI 752
                  ++    + +       +  L   Y PI  + + ++IV  E L++  H  +G I
Sbjct: 363 SDAHRQEKAVLNSLIQLFQGKPSDVALSCHYQPIASISNPKKIVAAEVLMRVKHKTFGPI 422

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           + ++ + + E   +   ++ ++   IA +      +       + IN++   LL   L +
Sbjct: 423 APNKVVDLCERNGLAIKLSHWLYRTIADECAPLYQENRYQG-KLTINMSP-SLLRPTLID 480

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +   + K     + I L  +E       E+   L+  L+  GI   LDDFGT  S L Y
Sbjct: 481 DIHQYLVKPGIPATAICLEITEDNAALQIEQVNALISELQNEGICFALDDFGTGHSSLEY 540

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           +  +  D +K + S +TG     +    + S++ +   +   II + +      + L+ M
Sbjct: 541 IRDLKIDRLKIDRSFVTGIDTNPRNYDFMASMVKLTHLLNMDIIIEGVETLEQWQALSSM 600

Query: 931 GCDYIQDSHVASPLGFNSILKLLKE 955
           G  ++Q   +  P+ F  + +LL +
Sbjct: 601 GDVFVQGYFLHRPMPFADLDRLLSQ 625


>gi|260688114|ref|YP_003219248.1| putative signaling protein [Clostridium difficile R20291]
 gi|306521224|ref|ZP_07407571.1| putative signaling protein [Clostridium difficile QCD-32g58]
 gi|260214131|emb|CBE06334.1| putative signaling protein [Clostridium difficile R20291]
          Length = 672

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 162/366 (44%), Gaps = 11/366 (3%)

Query: 523 KKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
           +K+   ++  A+ D++T   ++  F      I+  S+++         I+I K+K IND 
Sbjct: 311 QKNRAQLIKIAYVDSVTKGYSKARFDIEAKKIIQSSSSESYSLV---SINIQKFKLINDS 367

Query: 583 LGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIA 642
            G   GD  L  +   I   L+  ++L R+S ++F +++ +      I  +   +   I 
Sbjct: 368 FGSEAGDKTLKYIHDVISNYLEPGELLCRVSNDQFNVLIKTIPQKE-ILKYIENITNDIN 426

Query: 643 MPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
                 E +  +  SIG        +    +   A +A  + K   GNH     V     
Sbjct: 427 SFNKNEECKYFIALSIGVYKIDDPNLPLVSIQDRANVARKNNKGNIGNHPLYTCVFYSDL 486

Query: 703 DRV------MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
           +R+       ++  +  A+ N+E  +   P I L D  IVG EAL++W  P  G I   E
Sbjct: 487 ERLKMIKEKEMENRMEEALNNNEFIVYLQPKISLKDNTIVGAEALVRWQDPNKGLIPPDE 546

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+   E+   I  ++ ++ E++   I  W D     P+ + +N +  +L + +  E  + 
Sbjct: 547 FIPFFEKNGFITKLDHYVFEKVCSMIRKWID-NGETPMPVSVNFSRANLNNIDFLEKYRM 605

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           L +K       +++  +E++V  N ++   ++ ++ + G   +LDDFG+  S L+ L  I
Sbjct: 606 LRNKYNIPAKLLEIELTETLVFENLQKLINIIDQIHEEGFQCSLDDFGSGYSSLNMLKEI 665

Query: 877 PFDTVK 882
             DT K
Sbjct: 666 KVDTYK 671


>gi|161504355|ref|YP_001571467.1| hypothetical protein SARI_02465 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865702|gb|ABX22325.1| hypothetical protein SARI_02465 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 516

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A++N E+ + Y PI+ L   +IVG EAL +W       +S   F+ +AE+  + +
Sbjct: 273 HRLQDAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLTE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++E +  D+ SW          I IN+ + DL    L   +  L++++   PS+I
Sbjct: 333 PLTRLIIETVFEDMGSWLRAHPEQ--HISINLEASDLASETLPALLSTLLNRSQIPPSQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R  G S+ +DDFGT  S LSYL  +  D +K + S +
Sbjct: 391 ALELTEREF-ADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    + PL   +
Sbjct: 450 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETTRQEQWLRQHGVHYGQGWLYSKPLPATA 507

Query: 949 ILKLLKERF 957
            +   ++R 
Sbjct: 508 FILWAEQRL 516


>gi|261215840|ref|ZP_05930121.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|260917447|gb|EEX84308.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
          Length = 563

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 226 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 285

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 286 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 343

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 344 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 402

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 403 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEKADYLIAHGVQFGQ 462

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 463 GWLYSPPLPAQEFIEFYKAQ 482


>gi|260767557|ref|ZP_05876493.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
 gi|260617457|gb|EEX42640.1| sensory box/GGDEF family protein [Vibrio furnissii CIP 102972]
          Length = 830

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 165/424 (38%), Gaps = 32/424 (7%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+PNR    ++L   L ++ +       ++ + +  + +IN+  G  VGD +L  L
Sbjct: 421 DPRTGLPNRVVLREKL---LRMAGSHH-----LLALKLTNFNQINEKYGYQVGDRLLQDL 472

Query: 596 T----RRIGELLKFPDILARLSGNRFGIILISENNSLKIA----DFAIAMRKSIAMPINL 647
           +      + + L     L  +    +  +  SE +   I      F   +      P  L
Sbjct: 473 SAHFQHYLQQHLPGRSELFAIGVGEWATLFRSEADEAFIHLTFSQFVDQLEHVNFEPFGL 532

Query: 648 LERE-ITVTASIGFASWTS-SKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            E + ++V+   G  S          ++L  A  A  HA     +   + ++ +    R 
Sbjct: 533 PEVDYVSVSLCAGLVSRRDFPDKDPDDLLLRAIEARRHAHQHNRHFCNASQLRAQEQMRQ 592

Query: 706 M---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
                   +  AV ++ + +   PI +    E+  LE L++        I    F+ I E
Sbjct: 593 ERLGWLSCVSRAVLDNNVLVYAQPIYKAHSHELASLECLVRI-DDDGEIILPGRFLPIIE 651

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              +   ++  M+ R    +    +          IN+A +D +       ++  I    
Sbjct: 652 GTHLYTRLSRQMINRTFDLMRDRHEAF-------SINLAPQDFMSERTLLNLEEAIKSLP 704

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             PSR+ L   E+  + +      +    R +G S+ +DDFG+  S +  +  +    +K
Sbjct: 705 -DPSRVGLEVLETEQIKDYGHMIEVCNHFRSLGASIIVDDFGSGYSNIDEIVKLEPQVIK 763

Query: 883 FNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +GSL+    +   +  I + ++ + + +    +A+ ++ +   +    MG DY+Q  H+
Sbjct: 764 LDGSLIRNIDQDIKQRRIAQQLVQLCQVLNAKTVAEFVHNDEVRRISEAMGVDYLQGFHL 823

Query: 941 ASPL 944
            +P 
Sbjct: 824 GAPQ 827


>gi|205374177|ref|ZP_03226976.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor [Bacillus
           coahuilensis m4-4]
          Length = 479

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 187/472 (39%), Gaps = 12/472 (2%)

Query: 279 HAKVGYITFSGIACIAILFCMSFYYPMVT-ASIARITLASIVLYYTYFIIYHGMKGYERA 337
             +V  +  + I  I+ L  +  +      +         +        IY  +    R+
Sbjct: 5   SKRVFIVAMASIGIISFLLKIILHQLFSIDSDWTNFFTLLLSFSVIGLFIYFHILTGNRS 64

Query: 338 VLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLAT-GYF 396
           +       +  +  I     I  R        + +  L+ +V +     + +        
Sbjct: 65  IWTFSIQTIGLVTIIESIYWIWFRYPVIFHADSTINLLLFVVAIPNLLFVVNGFQRASKI 124

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV-TTTPDIATILGLASGSMHGPIRNWLPY 455
            Q +  + ++           ++  ++   +V   +  +  + G+    +      +L  
Sbjct: 125 EQKLMQNEQQLKTIYQSMDVGIYLMNVTSKKVHFVSSGMEKLTGIPQKDLLVNYDYYLEM 184

Query: 456 IHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           IH  D         +F G ++  ++ E+R+  ++ +  ++  R+ P  + + +     GI
Sbjct: 185 IHPEDASRLN--FLTFQGIQQDSVKREYRIIKSNGEVRYIKERLYPYQDGHSETSLLTGI 242

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             D+TE+K   + I   A+ D LTG+ NR+     +   L+ +    +   ++M ID+D+
Sbjct: 243 LFDVTEEKMKSQKIEFLAYHDELTGVYNRRFLEKYINE-LNENEQKSHENLSLMYIDLDR 301

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K IND+    VGD++L     R+ E L     + RL G+ F I+L       ++   A 
Sbjct: 302 FKAINDLYSHEVGDNLLREFALRLKECLGDYGKVIRLGGDEFCILLAV--GEKQVESLAE 359

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            M   + +P  +   E++++ SIG       KI  +++LK A+ A+YH K  G N    F
Sbjct: 360 KMVDVLKVPFFINSFELSLSCSIGVVHSNLHKIHINQLLKQADAALYHVKGSGRNGYAVF 419

Query: 696 RVSSFRSDRV--MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
               +        I+ +L  A  +  L + Y P       EIVG+EAL +  
Sbjct: 420 DEPLYIKFERRNQIERELKEATTSQRLDVYYQPQ--YKGSEIVGMEALARLK 469


>gi|330810274|ref|YP_004354736.1| c-di-GMP phosphodiesterase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378382|gb|AEA69732.1| Putative c-di-GMP phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 514

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 111/249 (44%), Gaps = 3/249 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+E  E      P++    +   G+E L++W+HPK G +    F+  AE   +I 
Sbjct: 263 RELQRALEAGEFVPYLQPVVHSDSKRWAGVEVLMRWNHPKEGLVRPDLFIPFAEHSGLIV 322

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++++    +     Q    P  + INI ++   D  L +  +  ++      + +
Sbjct: 323 PMTRGLMQQTMHLLAPLAPQL-EAPFHVGINITARHCQDLALVDDCREFLAAFAPGATAL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++     +R L  +LR++G+ + LDDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELIEPTPVTRQLFDQLRELGVKIALDDFGTGHSSLAYLRQFNVDFLKIDQSFV 441

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +L SII ++  +   ++A+ +        L+  G +++Q      P+  
Sbjct: 442 AMIGADTLSRHLLDSIIELSGKLGLDMVAEGVETVEQSDYLSAHGVNFLQGYLFGRPISG 501

Query: 947 NSILKLLKE 955
            + ++ L +
Sbjct: 502 QAFIETLTD 510


>gi|313496537|gb|ADR57903.1| Diguanylate cyclase/phosphodiesterase [Pseudomonas putida BIRD-1]
          Length = 648

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 175/436 (40%), Gaps = 22/436 (5%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           TEQ +  E +   ++QD+LTG+ NR+ F  +L   +  S  +D     ++++ +     +
Sbjct: 223 TEQAERSERLRAESYQDSLTGLSNRRYFEMQLNNRV--SNLEDARAGYLLLLRVQGLAGL 280

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAI 635
           N  LG    D +L ++  ++           D+++R  G  F ++     +   +   A 
Sbjct: 281 NARLGGQRTDQLLQAVGEQLRRTCASYPETNDLISRSRGGEFAVLAPGMVHEEAV-HLAQ 339

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHV 692
           A+  ++         +I   A IG A ++    +   +LK A+ A+  A+++   G   +
Sbjct: 340 ALEATLQSLHETGASDIDPVACIGLAPFSP-GDSPQALLKLADEALARAENQPTPGWVCL 398

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRL-MDEEIVGLEALIQWDHPKWGN 751
           E    +     +    E L  A  N    L + P++     + ++  + + +        
Sbjct: 399 EQGVAAVAADSQHAWHERLDQAFINGHFELFFQPVMECASSQRVLHHKVISRLRDGHGEA 458

Query: 752 ISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELC 811
           + +  F+   E    +  +++ +LE++   +             + +N+++  L D +  
Sbjct: 459 LPAGRFLPWLERFGWMPRLDVLVLEKVLAHLR-------GHDQVLALNLSAATLADPKAL 511

Query: 812 EGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLS 871
           + +  L+S+      R+     E  +         L  RL   G  L L  FG + S++ 
Sbjct: 512 QRIFELLSQNAALGPRLVFEIGEEQLPEQ-AALEQLTRRLHGFGFGLALQRFGGRFSMIG 570

Query: 872 YLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTR 929
            L ++    +K +GS +     +  +   + +I   A +I+  +IA+ +  E +   L  
Sbjct: 571 NLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERLVLLE 630

Query: 930 MGCDYIQDSHVASPLG 945
           MG   IQ   V  P  
Sbjct: 631 MGVGGIQGQLVGEPAP 646


>gi|91223633|ref|ZP_01258898.1| hypothetical protein V12G01_23243 [Vibrio alginolyticus 12G01]
 gi|91191719|gb|EAS77983.1| hypothetical protein V12G01_23243 [Vibrio alginolyticus 12G01]
          Length = 511

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 3/258 (1%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
                 +    + E+L  A++  E       ++     EI G+E L++W HP  G +   
Sbjct: 247 YYWWHTTRPQSLDEELKRAIKKKEFVPYAQAVVNAKTREIEGVEILMRWLHPIQGVVRPD 306

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AEE  +I  +   +L+  A+ +  +       P  + +NI+ +      L    +
Sbjct: 307 LFIPQAEESGLIVPMTELLLKETAKQLCDYSSHL-TKPFHVGVNISPQHCRGMGLANECK 365

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
             I         + L  +E  V+   E + +L   L+K+G  + +DDFGT  S L+ L  
Sbjct: 366 EFIQTVNQENIMLVLELTEREVLDFSESTEVLFSDLKKLGCKIAIDDFGTGHSSLANLQK 425

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              + +K +   +   GS      ++ S I +A  +   I+A+ +  E   + L      
Sbjct: 426 FQVNYIKIDQMFVQGVGSNPTSRHLVESTIELANRLSLEIVAEGVETEEQQEYLANYHVK 485

Query: 934 YIQDSHVASPLGFNSILK 951
           Y+Q    + P+     L+
Sbjct: 486 YLQGFLFSKPIPLEEFLQ 503


>gi|194445416|ref|YP_002043515.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404079|gb|ACF64301.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 533

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 5/263 (1%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           F  S  R      +  L  A+   +L L Y PII + +   VG EAL++W       +S 
Sbjct: 259 FMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSP 318

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
            EF+ +AE+  MI+ I  +++E +  D+  +      P +++ IN+A+ D L + L   +
Sbjct: 319 CEFIPLAEKEGMIEQITDYVVEEVFNDLGGFLAA--HPHLYVSINLAAADFLSSRLIVMI 376

Query: 815 QALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
                +      +IK+  +E   + +  +   ++   R+ G  + +DDFGT  S L  L 
Sbjct: 377 HEKTRQHSVLAQQIKVEVTERGFI-DVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLY 435

Query: 875 YIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D +K + S +   T    +  I+  II MA+++   IIA+ +     +  L + G 
Sbjct: 436 SLNIDLLKIDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGV 495

Query: 933 DYIQDSHVASPLGFNSILKLLKE 955
            Y Q  H A  L     +  L++
Sbjct: 496 QYCQGWHFAKALPPQEFIAWLQQ 518


>gi|167630150|ref|YP_001680649.1| signal transduction protein, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592890|gb|ABZ84638.1| signal transduction protein, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 780

 Score =  256 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 158/410 (38%), Gaps = 36/410 (8%)

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGEL-----LKFPDILAR 611
               ++     ++ +DI  +  I    G +V   VL +L++ I E            +  
Sbjct: 39  ERGLENENGVGLVFLDIVGFTAIERSYGFSVCKQVLSTLSQAIMEAKPILGAGRGLFVHN 98

Query: 612 LSGNRFGIILI-SENNSLKIADFAIAMRKSIA-MPINLLEREIT------VTASIGFASW 663
           L+G+ F +       +   + DF   + + +    + ++   ++      +   +G+A  
Sbjct: 99  LNGDDFAVYYSLPPGDIDTVLDFLERLAEDLRSQSLAVVNETLSGLLREPLDLHLGWAIL 158

Query: 664 -TSSKITSSEMLKNA-ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELY 721
             +S ++   ++ NA + A   AK                        +L  A+     +
Sbjct: 159 RPTSGLSLESLVYNALKEATAIAKGHSDAKWSRRIW------------ELKEAMAEDRFH 206

Query: 722 LVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARD 781
           +VY P++ L   EI+G EAL +     +    S  F  +AE+  ++  +   + E+   +
Sbjct: 207 VVYQPLLSLEKGEIIGYEALCRGPVDSYFASPSVLF-PLAEKADLLYPLERQIREKAIAE 265

Query: 782 IISWRDQANMPPIFILINIASKDLLDNELCE-GMQALISKTLYSPSRIKLSFSESVVMGN 840
                         + +NI+   + D E  +   + LI++    P  I    +E   + +
Sbjct: 266 CGELLRDQL-----LFLNISPSVVKDPEFAQGNTRRLIAEHGLRPHNIVFEITERTAIDD 320

Query: 841 PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAI 898
               R  L   R+ G  + +DD G   S L  +  +  D +K + SL+        + A+
Sbjct: 321 FGSFRKTLKHYREQGFRVAVDDAGAGYSSLQAIAELQPDFIKIDMSLVRDIDTSSIKQAL 380

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           + + +   + I   I+A+ I  E +++ L+++G D  Q   +  PL    
Sbjct: 381 METFVTFGRKIGAKIVAEGIETEKELRFLSQIGVDIGQGFFIGRPLPKRE 430



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 68/229 (29%), Gaps = 31/229 (13%)

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIP-NRQSFLDRLTTILDLS 558
             +          + +   +    +        A    LTG+P N      R+   +   
Sbjct: 559 HIIVTDKNRCTGVVSVRTLLDHMTRIQMEYALAAN--PLTGLPGN-----PRIEQDILR- 610

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLT----RRIGELLKFPDILARLSG 614
             + N   TV+ ID+D +K  ND  G   GD  +  L       +    +  D+LA + G
Sbjct: 611 RFEWNQAFTVIYIDLDNFKAFNDRYGFERGDQAIKLLAGIAGDVVRAKGRTDDLLAHIGG 670

Query: 615 NRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTAS----------------- 657
           + F IIL              A  + I    +  +RE     S                 
Sbjct: 671 DDF-IILTGNPYEAICEGIIAAFDREIVELYSAEDRERRCICSKDRQGNTCFFPIMSVSL 729

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM 706
                W        E+ + A      AK + G+       S  + D + 
Sbjct: 730 AVVECWPGRFDHPMELGEVAAEVKKEAKRQSGSVYIIDEKSRRQKDSLT 778


>gi|332994633|gb|AEF04688.1| Signaling protein with a acyltransferase and GGDEF domains
           [Alteromonas sp. SN2]
          Length = 635

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 115/698 (16%), Positives = 218/698 (31%), Gaps = 95/698 (13%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +R++    F+I V+ +      + ++ P   ++S       S      +  E     T  
Sbjct: 10  VRNYDLYLFVITVVAVSIFAFVALSVVPERTTNSR-----ISQLAFISDPEERLTFETVL 64

Query: 67  D------IDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHF--F 118
           D          +  +      +     W  F +   S   +  L  + +  L       +
Sbjct: 65  DNTADNSPALWTPTVSPVNLGMSSDVHWFSFVVTPDSSRAVSYLFEIDYALLDSVEVAVY 124

Query: 119 SPDLGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNL--PQIYLW 176
            P   S  +            R   +++ +F + ++     T ++ + +       I +W
Sbjct: 125 PPSSSSAIVRYQAGDNLAFDVRPIANNTPLFSLPLSA-KPQTVVVRVESSGTIRMPIAVW 183

Query: 177 EPNFYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVV-LGYISID 235
           E   + +   S  L  G+  G    +AI     +   ++   +     A  + L   S+ 
Sbjct: 184 EEREFIEYAASQNLALGLFFGFLCAMAISNIFLFFTTKNRSFLFYTGYALSLGLTLASLQ 243

Query: 236 FGFLSKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAI 295
               + L                 A     ++F    L    +   V  I+        +
Sbjct: 244 GLGYAYLWPEQVWLQGKAVLIFGNATILFAVLFSRHLLPIAEFSPLVDKISQVAAWAFGV 303

Query: 296 LFCMSFYYPMVTAS-IARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGL 354
               S   P   A  +  + LA IV    +   +   KG   A     AW+ + +    +
Sbjct: 304 CILTSTLLPYPFAIKLYLVMLAIIVFVAMFIGGWLSFKGVAIARYFSVAWLFLLVSGFVV 363

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            +     ++  I    L     LI+     TVI  ++    +S         Q+ A+   
Sbjct: 364 SLDSVNIINLGISTSYL-----LIIAGTVETVILALILAINYSHSYDELITTQAFALEQ- 417

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGY 474
                           +     +L                      +  ++  L+  V  
Sbjct: 418 ------------EQQASKAKEDLL--------------------EVQKRYQDDLEYKVEE 445

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAF 534
           R   L+   R                                    E  +  + +     
Sbjct: 446 RTLELEITLR------------------------------------ELSEVNQELERLTA 469

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D LTGI NR+ F  +L +     +  +    ++ VIDID +K+IND  G A GD  L+ 
Sbjct: 470 IDPLTGINNRRHFDKKLKSE-GRRSRREQTPLSIAVIDIDHFKRINDKYGHAGGDACLIH 528

Query: 595 LTRRIGELLKF-PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
           +T  I  +L    D L R+ G  F +IL + ++            +    PI      I 
Sbjct: 529 ITGIIQGMLLRLSDDLCRIGGEEFALILPNTDSDGAYHVVEAIRDRIEKSPIMFDGEAIQ 588

Query: 654 VTASIGFA-SWTSSKITSSEMLKNAELAMYHAKHRGGN 690
           +T S G A S  + +  ++ +L+ A+  +Y AK  G N
Sbjct: 589 LTISAGLATSIITDEDHAAALLRLADEQLYAAKESGRN 626


>gi|323965724|gb|EGB61176.1| EAL domain-containing protein [Escherichia coli M863]
 gi|327250406|gb|EGE62119.1| EAL domain protein [Escherichia coli STEC_7v]
          Length = 528

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 5/257 (1%)

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
           R + +  K  L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +
Sbjct: 265 RQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPL 324

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  MI  +  ++++ + RD+ ++         ++ IN+++ D   + L         +
Sbjct: 325 AEKERMIGQVTDYVIDNVFRDLGAYLATHADR--YVSINLSASDFHTSRLIARTNQKTEQ 382

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
               P +IK   +E   + + ++   ++   R+ G  + +DDFG   S L  L  +  D 
Sbjct: 383 YAVRPQQIKFEVTEHAFL-DVDKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDI 441

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S +   T  + +  I   II +A ++    IA+ +  E  +  L + G  Y Q  
Sbjct: 442 LKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEDQVNWLRKRGVRYCQGW 501

Query: 939 HVASPLGFNSILKLLKE 955
             A  +     ++ +++
Sbjct: 502 FFAKAMPPQVFMQWMEQ 518


>gi|317130352|ref|YP_004096634.1| diguanylate cyclase with PAS/PAC sensor [Bacillus cellulosilyticus
           DSM 2522]
 gi|315475300|gb|ADU31903.1| diguanylate cyclase with PAS/PAC sensor [Bacillus cellulosilyticus
           DSM 2522]
          Length = 427

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 152/344 (44%), Gaps = 12/344 (3%)

Query: 355 WMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGS 414
            +     +   I+ P        I  ++  T  + +       + +    ER  L    S
Sbjct: 88  AITANGDIGESILTPIFDEEKKEITYILSVT--RDISIRKKMEKRLEESEERYRLIAENS 145

Query: 415 GDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND---RDNFRTILDSF 471
            +++   D   + +  +P    ILG           +     H  D   ++ F+   +S 
Sbjct: 146 TNLIQLVDSDGNLIYASPSFKKILGYHP---IDKSHSVFGQFH--DCGKKEEFKKQFESA 200

Query: 472 VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILC 531
           +  ++  +  E  V+  +    W+ + I P+      I + + +A DITE K+  + I  
Sbjct: 201 L-CKKETVSIEMDVQHENGSILWLKVDIIPIFEIGSKISKMLIVAKDITESKEYEKEIRF 259

Query: 532 NAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDV 591
            A+ D LTG+PNR  F + +   L+ +  +       + +D D +K++ND  G   GD  
Sbjct: 260 MAYHDPLTGLPNRGFFKEYMLMSLERAKKNSE-SMACLFLDCDNFKQLNDAHGHDAGDKF 318

Query: 592 LVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
           L S+ +R+   L+  D++AR+ G+ F I+L   N+   ++D A  + K I  P  L   E
Sbjct: 319 LQSVAKRLHSELQKDDMIARIGGDEFNILLSQMNSKQHVSDVAQRLLKVINEPWPLSGGE 378

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             +TASIG A +     T   +LK+A++A+Y AK+ G N  + +
Sbjct: 379 WEITASIGIALYPEDGDTMETLLKHADIALYDAKNNGRNQYKWY 422


>gi|124514195|gb|EAY55710.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptospirillum rubarum]
          Length = 831

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/578 (17%), Positives = 211/578 (36%), Gaps = 57/578 (9%)

Query: 380 ILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLG--------SGDIVWDWDIVRDRVTTT 431
           ++     +   LA  +  +        Q +A           + D  ++W          
Sbjct: 125 LISLMEDLSDKLAIAFRHENEQQQIRLQKIATEAVDTPLFIAAPDGTFEW--------AN 176

Query: 432 PDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV---GYRRGRLQYEFRVRAA 488
                  G + G +      +        +      L++ +            E+     
Sbjct: 177 KAYLESKGCSPGEIPDFPGYYFSR-----QTGRTFSLENPLWKTLRAGETYIQEYTSLRK 231

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
             + + + IRI P+   + ++L  + I  +++++K+  E +   A+ D LT + NR    
Sbjct: 232 GGESYPVEIRISPVFGEDRELLHMVCIEKNLSDRKQEEEELRKKAYFDPLTHLANRHLME 291

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
             L+  ++++  + N+   V+ +D+D +K++ND  G   GD +LV +  R+ +L++  D+
Sbjct: 292 GELSRSIEVARRN-NMSMAVLFLDLDGFKEVNDNHGHEFGDKLLVHVAGRLEKLIRHGDL 350

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
           +ARL G+ F +IL +  N  ++   A  +   I  P  +  + + +  SIG + + +   
Sbjct: 351 VARLGGDEFVVILNNIRNPAEVRAAAGRILAGIQAPYLIDGQTMIIGTSIGISVYPNEDK 410

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
             S +L+ A+ AMY AK+RG N+   +   S   +               E      P+ 
Sbjct: 411 DPSSLLREADQAMYLAKNRGKNNFVLYTPPSEEINDGQTGIPKESFPSLPERLFTLAPVR 470

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL--FMLERIARDIISWR 786
            L   EI G  +L      +             E+   I          E       + +
Sbjct: 471 SLNSGEIAGF-SLSTAQSERQTLYG--------EDAGRILPYEEKKRFFEHARNVWENIQ 521

Query: 787 DQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRL 846
                  + I   +++  +++ +       ++        R       S        +  
Sbjct: 522 HTYPGAFLKIS--LSAHQVMEADFFSVFSLVLGDLG-PEER-------SRFFIGLHGNIP 571

Query: 847 L---------LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KR 895
                     + RL + G  L  +  G + + L  L Y+P   ++ +G+L+         
Sbjct: 572 FPGTYGQDNSISRLTEEGFVLGTERVGDQGNTLFQLRYLPVRFLEVSGTLIRDMAHEAND 631

Query: 896 IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +A+L SI  +  +++  +I   +        L R+G D
Sbjct: 632 LAVLGSIFLLGSSLDKKLIVPGVEDIETALILKRLGFD 669


>gi|198244806|ref|YP_002214295.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939322|gb|ACH76655.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326622041|gb|EGE28386.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 516

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  + D    G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVYYQPVFNVKDGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+  N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMEANDFMSWLGKSAQRQNGLLK 504


>gi|254504031|ref|ZP_05116182.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222440102|gb|EEE46781.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 566

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 110/248 (44%), Gaps = 4/248 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +   A+ N E    Y P++ +  + + G E L++W  P    +S  +FM  AE    I  
Sbjct: 289 EFVAAIRNGEFIPYYQPVMDIETKRVRGCEVLMRWRRPNGMIVSPGQFMAYAEANGHIFD 348

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   M+   + ++ +       P   + IN+ +   LD E+   ++     +  S  +I 
Sbjct: 349 MTRHMMRVASDEVGALY--GEHPDFKLSINLFAGHFLDREIVADIKNTFENSEISYQQIV 406

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E   + + E +R ++  L+ +G+ + LDD GT    ++YL  +  D +K +   + 
Sbjct: 407 VEVTERYPLEDMELARKIMAELQALGVRIALDDVGTGHGGMAYLQKLGVDIIKIDKMFID 466

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             +    +  I+ S++ +A N+   IIA+ +  E  I  L  +G    Q  + A P+   
Sbjct: 467 SISSDDNSTTIVDSMVELADNLGMGIIAEGVEEEEQIDRLMELGVTAAQGYYFARPMPAK 526

Query: 948 SILKLLKE 955
             ++  + 
Sbjct: 527 EFIEFAER 534


>gi|307131511|ref|YP_003883527.1| Rtn protein [Dickeya dadantii 3937]
 gi|306529040|gb|ADM98970.1| Rtn protein [Dickeya dadantii 3937]
          Length = 501

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 112/250 (44%), Gaps = 5/250 (2%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+EN E+   Y P+I    +EI G+E L +W HPK G IS   F+ + E+  +I  +
Sbjct: 253 IRRAIENQEVLPYYQPVISTESQEIYGVEVLARWHHPKSGFISPDIFIPLCEQSGLIIPM 312

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++  + RD  S  D      + I INI++     ++     Q  I+        + +
Sbjct: 313 TRSLMSSVVRDFASRLDTLPDH-LHIGINISALHCQSDDFITDCQNFIAAFGEKKVHLMI 371

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E   +     +     +L   G+ + LDDFGT  S   YL  +  + +K + S ++ 
Sbjct: 372 EITEREKIDITPETIAFFKKLSDAGVLIALDDFGTGYSNFDYLRKLHVNVIKIDQSFVSM 431

Query: 891 STEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             E       ++  +I +A+ +    +A+ +  E     L+R   +++Q    + PL F+
Sbjct: 432 IDENDPQSSTLVNCVIDLAQQMNLMTVAEGVETEYQAAFLSRKQINFMQGYFFSRPLPFD 491

Query: 948 SILK-LLKER 956
            + +  L +R
Sbjct: 492 ELAQTWLSKR 501


>gi|317491351|ref|ZP_07949787.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920898|gb|EFV42221.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 510

 Score =  256 bits (654), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 4/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A++N E      P++   + ++ G E L++W HP+ G I+ ++F+ +AE+  +I 
Sbjct: 264 SELRSALKNHEFIPYIQPVVSCENNDLTGCEVLMRWRHPQMGMIAPNQFIPLAEDSGLIV 323

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++        +Q         INI++    D  L +  +  I+       ++
Sbjct: 324 PMTRDLMAQVRDYFAPLAEQLPY-NFHFGINISASHFKDLSLVDDCRLFINAFEGYKIQL 382

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   E +  +   L  +G+ + LDDFGT  S L+YL     D +K + S +
Sbjct: 383 VLELTERQLIVPSELTHRIFHELHGLGVRIALDDFGTGHSSLAYLREFQIDILKIDQSFI 442

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ ++I +AK ++   +A+ +      + L +   DY+Q      P   
Sbjct: 443 RMIGSDALSGHIVDNVIDLAKRLQLVTVAEGVETSEQAEHLKKYHIDYLQGYLFGRPEDQ 502

Query: 947 NSIL-KLL 953
            +   K L
Sbjct: 503 KTFSDKWL 510


>gi|238761232|ref|ZP_04622209.1| hypothetical protein ykris0001_35840 [Yersinia kristensenii ATCC
           33638]
 gi|238761485|ref|ZP_04622461.1| hypothetical protein ykris0001_22250 [Yersinia kristensenii ATCC
           33638]
 gi|238700459|gb|EEP93200.1| hypothetical protein ykris0001_22250 [Yersinia kristensenii ATCC
           33638]
 gi|238700712|gb|EEP93452.1| hypothetical protein ykris0001_35840 [Yersinia kristensenii ATCC
           33638]
          Length = 513

 Score =  256 bits (654), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 113/246 (45%), Gaps = 6/246 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           + D+  A+E  +  L   P   +    I+G EAL++W          SEF+  +EE   +
Sbjct: 264 ENDILQAIEKRDFVLFLQPQWDMEAPRIIGAEALLRWRQADGSYRLPSEFITDSEESGAM 323

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +  ++LE     +  W+ +     + + +NI+   L    +   +Q ++S+    P +
Sbjct: 324 IPLGNWVLEESCGILADWKARGIT--LSLAVNISGLQLQCESILTHLQTILSRYDIDPRQ 381

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY---LGYIPFDTVKFN 884
           + L  +E+  + + +++ +LL  L+ +G+S+ LDDFGT  S L Y   L  +P + +K +
Sbjct: 382 LVLEITETARIQDLDKALMLLRELQGLGLSIALDDFGTGYSSLQYLNHLKSLPINIIKLD 441

Query: 885 GSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            S +    E    + R I  +++ ++  ++A+ +  +   + L + G    Q    + PL
Sbjct: 442 KSFVKYLPEDD-VMARIISTISEVLKLRVMAEGVETDEQRQWLLKQGIRCGQGFLFSEPL 500

Query: 945 GFNSIL 950
                 
Sbjct: 501 SREEFE 506


>gi|152991473|ref|YP_001357195.1| hypothetical protein NIS_1732 [Nitratiruptor sp. SB155-2]
 gi|151423334|dbj|BAF70838.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 744

 Score =  256 bits (654), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 151/417 (36%), Gaps = 33/417 (7%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F + +T +PN   FL     ++           T++ IDI  +K  ND+ GI  GD +L 
Sbjct: 358 FYNAITHLPNINYFLIHKRELIFQ---------TIIYIDIHHFKLFNDLFGIEFGDKLLR 408

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREI 652
                +               ++F ++     +  +   FA  +        I +   +I
Sbjct: 409 RFAEELKRFELPT---FHALTDQFFMLFNG--SIEEAKTFAKTVVDFFDAISIKVDGVDI 463

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE-DL 711
            +                   L+ A  A+  A       +    +   R +    K   L
Sbjct: 464 DLHIHCSII-----DANIDNALQKAYFAVKTATLNNPIVIYDSTLIEKRHEIFKQKYIKL 518

Query: 712 CLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAIN 771
              +   ++      +I    +++V  E L +        ++   FM I ++  +   + 
Sbjct: 519 KQLISERKVLAYRQNVIDNHTKKVVYSEILARI-DDHGTILTPYHFMDITQQSGLYFDLV 577

Query: 772 LFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLS 831
             M E I   +   +         I IN++ +D+   ++   +   +         I + 
Sbjct: 578 QQMYENIFSYLQRNKQH-------ISINLSFRDIEHEKIRTYL---LKNFELYGRYITIE 627

Query: 832 FSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS 891
             E+  M      +  L  +++ GI + +DDFG+  +   Y+  +  D +K +GSL+   
Sbjct: 628 ILETEYMQTQSIVQSFLNEVKRYGIQIAIDDFGSGYANFDYVLKLGADYIKIDGSLIKNL 687

Query: 892 -TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             E    I++ I+ +AK++    +A+ +  E   + +  +G DY Q  +   P   +
Sbjct: 688 TNEVNYTIVKHIVSLAKDLGVKTVAEFVENEEIYQLVCSLGIDYSQGYYFHRPEPLS 744


>gi|288936808|ref|YP_003440867.1| EAL domain protein [Klebsiella variicola At-22]
 gi|288891517|gb|ADC59835.1| EAL domain protein [Klebsiella variicola At-22]
          Length = 519

 Score =  256 bits (654), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ +  + + Y PII L D +I G EAL +W  P    +S   F+ +AE+  +I 
Sbjct: 273 NSMLDALNSEAIQVYYQPIISLQDGKIAGAEALARWQQPDGTFLSPDIFIPLAEQTGLIT 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ +I  D+  W  Q   P + I IN++  DL    L   +   +     +  +I
Sbjct: 333 QLTEDIVRKIFTDLGPWLRQ--RPEVHISINLSVDDLRSPTLPTLLHDQLQHWGIAAEQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   + +PE +  ++   R+ G  +++DDFGT  S LSYL  +  DT+K + S +
Sbjct: 391 ILEITERGFV-DPETTMQVIAHYRQDGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   +   II MAK +    +A+ +  E     L + G  Y Q    +  L    
Sbjct: 450 DTL--EYRPLTPHIIEMAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSKALPKEQ 507

Query: 949 ILKL 952
            +  
Sbjct: 508 FILW 511


>gi|238913279|ref|ZP_04657116.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 516

 Score =  256 bits (654), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  + +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIE--VLRTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDYLKIDRTFIDTIDTSSNDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|291519335|emb|CBK74556.1| FOG: EAL domain [Butyrivibrio fibrisolvens 16/4]
          Length = 462

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 169/422 (40%), Gaps = 16/422 (3%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  T I NR++    + +I+ +       + +++ I I     I  V      D   +++
Sbjct: 55  DADTRIYNRRALQMDIHSIITM-----KEQASLIFIKISNANIIERVTRSTNYDVFSIAV 109

Query: 596 TRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVT 655
              +  L+     +   +   F II  ++ + + I+     +         L      + 
Sbjct: 110 ADYLKTLV-PRYKIYHPNKECFVIIF-NQFDKVSISQIIANIILRFEDEWQLYRTAFKLD 167

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAV 715
           A+I  A   +   T  +++  A+  +       G      R           ++ +  ++
Sbjct: 168 ANILNAKIPTDLNTYDDIIYIADSIIPSGTISPGEEFHWIRRRIDV------EQAIRNSL 221

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
                 + Y P +   D  + G EAL++ +    G IS  EF+ IAE++ ++  I+ ++L
Sbjct: 222 IQGNFEVHYQPTVYADDFHVHGAEALVRMNDSVVGAISPQEFIPIAEQIGVVDQIDDYVL 281

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
             + + I             I +N++    L N   E +  L+ +     S I    +ES
Sbjct: 282 SEVCKFIKECNPIKYQYDC-INVNLSVIQCLQNGFVEHILKLVDEYGIDHSYINFEITES 340

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM--TGSTE 893
           V   +      +   L+  G  L++DD+GT  S +  +  + FD VK + S++     +E
Sbjct: 341 VGAEDYFTLAKVAHDLKISGFHLSMDDYGTGYSNMEGMFELEFDIVKIDKSILWNADKSE 400

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           +  ++L + I M K++   ++ + I  +  ++ L +   DY+Q  + + P+     L  L
Sbjct: 401 RGRSLLVNSIRMIKDLGCEVLVEGIETKEHVELLQQYDVDYMQGFYFSKPIPKTLFLDYL 460

Query: 954 KE 955
            +
Sbjct: 461 SK 462


>gi|117620372|ref|YP_855555.1| EAL domain-containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561779|gb|ABK38727.1| EAL domain protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 513

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 3/248 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+   E      PI+   + ++ G E L++W H + G I    F+ +AEE  +I 
Sbjct: 262 QELRRAIIKQEFVPYLQPIVVSQNGQLHGCEVLMRWQHHRQGLIRPDLFIPLAEESGLII 321

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +++++             P      NI ++      L +  ++ ++    +P  +
Sbjct: 322 LMTQTLMQQVRLQFAPHAAALP-PRFHFSFNICARHCQQLSLLDDCRSFLAAFTANPITL 380

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++     +  L   LR++G+ + LDDFGT  S L+YL     D +K + S +
Sbjct: 381 VLELTERELITPNHLTERLFEELRQMGVRIGLDDFGTGHSSLTYLQQFHVDYLKIDQSFV 440

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      IL S I +A  +    IA+ +  +     L     DY+Q      PL  
Sbjct: 441 AMIGTNALSRHILDSTISLATRLGLQTIAEGVETQEQADFLVERQVDYLQGYLYGRPLTP 500

Query: 947 NSILKLLK 954
              L+ L 
Sbjct: 501 QQFLQQLS 508


>gi|116514000|ref|YP_812906.1| C-di-GMP-specific phosphodiesterase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093315|gb|ABJ58468.1| C-di-GMP-specific phosphodiesterase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 353

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 139/355 (39%), Gaps = 13/355 (3%)

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
           GD +L  L+  +   +K    +     +RF I+ +              +++     +NL
Sbjct: 4   GDQLLRELSELLVSEIKEG-HVYYNKDDRFLILTV-------AEGIDEKIKEIHEKFVNL 55

Query: 648 LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM- 706
            + +  V    G             + + A  AM         +V+ +  +         
Sbjct: 56  AKNK-AVDLQFGLYQILDDDQNIMMITQRANQAMKEIGLDRRVYVKKYDPAVEEDLEESY 114

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
              +   A+    L   + PI    D +    EAL +W  P+ G +S + F+ + E+  +
Sbjct: 115 FLNNFSRAMTEGWLTAYFQPICSAKDGKTASYEALARWQDPEKGLVSPAAFIPVIEKHYL 174

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
              ++++ML  +   +  W+++       + +N+A +D     L E +  L++    S S
Sbjct: 175 TYYLDMYMLWEVVAKLRQWKERGLDLK-PVSVNLAHEDFEMPNLVEKINDLVTGAGLSWS 233

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            IK+  +E  +  N  R +  + +LR  G  + +DDFG+  S L+ L    FD VK +  
Sbjct: 234 LIKIEITERDLSNNTSRLKEQIDQLRSYGFEVWMDDFGSGYSSLNALNDYSFDLVKIDMV 293

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
            +    +      ++  I  +A  +   ++A+ +  E     L   GCD +Q   
Sbjct: 294 FVRHLDDGQLNRLLIPEITKVAHKLGLKVLAEGVEKEEQRYFLREAGCDLLQGFF 348


>gi|238893412|ref|YP_002918146.1| hypothetical protein KP1_1299 [Klebsiella pneumoniae NTUH-K2044]
 gi|238545728|dbj|BAH62079.1| hypothetical protein KP1_1299 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 519

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 5/244 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             +  A+ +  + + Y PII L D +I G EAL +W  P    +S   F+ +AE+  +I 
Sbjct: 273 NSMLDALNSEAIQVHYQPIISLQDGKIAGAEALARWQQPDGTFLSPDIFIPLAEQTGLIT 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ +I  D+  W  Q   P + I IN++  DL    L   +   +     +  +I
Sbjct: 333 QLTEDIVRKIFADLGPWLRQ--RPEVHISINLSVDDLRSPTLPMLLHDQLQHWGIAAEQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E   + +PE +  ++   R+ G  +++DDFGT  S LSYL  +  DT+K + S +
Sbjct: 391 ILEITERGFV-DPETTMPVIAHYRQAGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                +   +   II MAK +    +A+ +  E     L + G  Y Q    +  L    
Sbjct: 450 DTL--EYRPLTPHIIEMAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSKALPKEQ 507

Query: 949 ILKL 952
            +  
Sbjct: 508 FILW 511


>gi|82702684|ref|YP_412250.1| response regulator receiver/diguanylate phosphodiesterase
           [Nitrosospira multiformis ATCC 25196]
 gi|82410749|gb|ABB74858.1| response regulator receiver (CheY-like) modulated diguanylate
           phosphodiesterase (EAL domain) [Nitrosospira multiformis
           ATCC 25196]
          Length = 412

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 122/249 (48%), Gaps = 4/249 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            ++L  A++ SEL   Y P + +   E+VG+E L++W HP+ G +   +F+ +AE   +I
Sbjct: 148 ADELRAALKESELINYYQPKVAVASGEVVGVETLVRWRHPRDGIVFPDQFIGVAEASGLI 207

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   +         +W++     P+ I +N++  +L   +    +    +K   +P  
Sbjct: 208 DDLTQTVFTAAMTQAKAWQEA--RLPLRIAVNVSMDNLASIDFLNFVAEAAAKEGIAPQN 265

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +ES +M +      +L RLR     L++DDFGT  S L+ L  IPFD +K +   
Sbjct: 266 VVLEVTESRLMQDTRAPLEILTRLRLKRFRLSIDDFGTGHSSLAQLRDIPFDELKIDQGF 325

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +  ++      AI  + + +A+ +   ++A+ +  + D + L R GCD  Q + V+ PL 
Sbjct: 326 VHRASTDETLRAIYDASLSLARQLNMEVVAEGVQDQEDWELLRRTGCDLAQGAFVSRPLL 385

Query: 946 FNSILKLLK 954
              +   ++
Sbjct: 386 PEDVPGWIE 394


>gi|288549929|ref|ZP_05968661.2| inner membrane protein YfgF [Enterobacter cancerogenus ATCC 35316]
 gi|288317228|gb|EFC56166.1| inner membrane protein YfgF [Enterobacter cancerogenus ATCC 35316]
          Length = 764

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 172/437 (39%), Gaps = 19/437 (4%)

Query: 520 TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKI 579
           T Q+         A  D +  +PN ++    L           +    + ++ I + + +
Sbjct: 334 TRQRAINIRSRRLALLDPVVHMPNLRALSRAL---------SKSPWSALCLLRIPELEVL 384

Query: 580 NDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRK 639
               G+ +       L   I   L   + +  L+G    I + +E++  +I      + K
Sbjct: 385 GHNYGVLLRIQYKQQLAAWINHALLPGECVYTLTGYDLAIRMGTESHQERIVALDERI-K 443

Query: 640 SIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKHRGGNHVESFRV 697
                 + +  +  V  S  +     + +     E+   A L++            +  +
Sbjct: 444 LFRFIWDGMPLQPQVGISYCYVRSPVNHLYLLLGELSIIANLSLSSHHPESLQQRGAMHL 503

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                ++V +   L  A+E  +  L+   +  L  +     E L++    +   IS   F
Sbjct: 504 QRNLKEKVAMMNLLQRALEEDKFTLMVQRVRGLRGD--HYDEVLLRMLDEQGELISPDRF 561

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +A+E  +   ++L++LER  + +   RD+         IN+A       +  + ++ L
Sbjct: 562 LPVAQEFGLSSRVDLWVLERTLQFLADHRDRLPAQ--RFAINLAPSTACRTQFPQEVKQL 619

Query: 818 ISKTLYSPSRIKLSFSESVVMGN-PERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
           ++K      ++ +  +E    GN  E++   L +L+ +G+ + +DDFGT  +  + L  +
Sbjct: 620 LTKYGVEAWQLIVEITECGCFGNGSEQATQTLSQLQAMGVRIAIDDFGTGYASYARLKSV 679

Query: 877 PFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K +GS +           I+ SI  +A+  +  ++A+ +  E     +  +G DY
Sbjct: 680 DADILKIDGSFIRNIVSNSLDYQIVASICHLARMKKMLVVAEYVETEEIRSAVHALGIDY 739

Query: 935 IQDSHVASPLGFNSILK 951
           +Q   +  P+   S+L 
Sbjct: 740 VQGYLIGKPVEMASLLD 756


>gi|17989249|ref|NP_541882.1| EAL domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|260564468|ref|ZP_05834953.1| EAL domain-containing protein [Brucella melitensis bv. 1 str. 16M]
 gi|17985110|gb|AAL54146.1| rtn protein [Brucella melitensis bv. 1 str. 16M]
 gi|260152111|gb|EEW87204.1| EAL domain-containing protein [Brucella melitensis bv. 1 str. 16M]
          Length = 530

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|84393554|ref|ZP_00992308.1| GGDEF family protein [Vibrio splendidus 12B01]
 gi|84375833|gb|EAP92726.1| GGDEF family protein [Vibrio splendidus 12B01]
          Length = 826

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 166/425 (39%), Gaps = 34/425 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+PNR    ++L+ +   S         ++ + +  + +IN+  G  VGD +L  L
Sbjct: 417 DRRTGLPNRSVLREKLSQMSSDSH--------LLALKVTTFGQINEKYGYRVGDKLLHDL 468

Query: 596 TRRIGELLK----FPDILARLSGNRFGIILISENNSLKIAD----FAIAMRKSIAMPINL 647
           +    + L         L  +    + ++  S  +   I      F+         P+ L
Sbjct: 469 SDYFQKALWQFFDEGCQLYSIGIGEWAVVFDSWASQEHIHQRFSEFSDQTEHVNFEPMGL 528

Query: 648 LEREITVTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFR 701
            + +  ++ SI     +       +  ++L  A  A   A  +  +        ++   R
Sbjct: 529 PDID-YLSVSICAGVASRRDFPATSIDDLLLKAIEARRSAVSQNKHLVSAKTLIQLEKHR 587

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++     +  AV N  +     PI+     ++   E L++ +      I+  +F+ I 
Sbjct: 588 QEQLGWLSCVSRAVLNQNIVACSQPIVSAHSHQVESYECLVRIE-EDGQLIAPGKFLPII 646

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +   ++  M+ R    +    D          IN+A +D  + +    ++  I K 
Sbjct: 647 EGTHLYTRLSRQMITRTFDFMSQRTDSF-------SINLAPQDFSNEKTILHLEQAIKKI 699

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L   E+  + +  R   +    R +G+++ +DDFG+  S +  +  +    +
Sbjct: 700 S-HPQRIGLEVLETEQIQDYGRLIEVCNHFRDLGVNIIVDDFGSGYSNIDEILKLEPQVI 758

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +GSL+    + +    I + ++ + + +    +A+ ++ E   +    MG DY+Q  +
Sbjct: 759 KLDGSLIRNIDKDKKQRKIAQQLVSLCQILNAKTVAEFVHNEQVCRIAEDMGVDYLQGYY 818

Query: 940 VASPL 944
              P 
Sbjct: 819 FGQPQ 823


>gi|194736853|ref|YP_002113372.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712355|gb|ACF91576.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
          Length = 516

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|294637066|ref|ZP_06715381.1| cyclic di-GMP phosphodiesterase YahA [Edwardsiella tarda ATCC
           23685]
 gi|291089763|gb|EFE22324.1| cyclic di-GMP phosphodiesterase YahA [Edwardsiella tarda ATCC
           23685]
          Length = 519

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 4/248 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   +      P++   DE +VG E L++W HP+ G I  + F+ +AE+  +I A+
Sbjct: 266 LREALRRHQFIPYIQPVVSGQDERLVGCEILMRWQHPQLGLIPPNNFIPLAEDSGLIVAM 325

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              M+++++                   NI++    D  L E  +  ++    +P ++ L
Sbjct: 326 TRDMMQQVSDYFAPRCKSLPA-DFHFGFNISASHFNDLSLVEECRRFLAAFQENPIQLVL 384

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E   + +   +  +   LR +G+ L LDDFGT  S L+YL   PFD +K + S +  
Sbjct: 385 ELTERQRVPDGALTERIFDELRALGVQLALDDFGTGHSSLAYLQRYPFDILKIDQSFVRM 444

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +AK +    +A+ +  E  ++ L     D++Q      P     
Sbjct: 445 IGSDALSEHIVDTVITLAKRLNMVTLAEGVESEPQLQHLRAYHLDFLQGYWFGRPSSLTD 504

Query: 949 ILK-LLKE 955
             +  L  
Sbjct: 505 FTQHWLAN 512


>gi|148978766|ref|ZP_01815146.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145962187|gb|EDK27471.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 832

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 178/445 (40%), Gaps = 40/445 (8%)

Query: 522 QKKSLEGILCN--AFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           +KK  +       +++ D+ TG+PNR    +RL TIL            ++ + +  + +
Sbjct: 401 EKKLHQQARRLTESYRIDSRTGLPNRIVLKERLNTILFSEH--------LLTLKLTNFHQ 452

Query: 579 INDVLGIAVGDDVLVSLT----RRIGELLKFP----DILARLSGNRFGIILISENNSLKI 630
           +N+  G  VGD +L+ L+     R+   +         L  +    + II  +  +S +I
Sbjct: 453 VNEKYGYQVGDQLLLDLSNHFVERLQLRVVKEPNVKVELFSIGVGEWAIIFNASVDSARI 512

Query: 631 AD----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSK---ITSSEMLKNAELAMYH 683
            +    FA  +      P  L + +  ++ S+     +       +  E+L  A  A  +
Sbjct: 513 KEGFVEFADDIEHINFEPYGLTDID-YLSVSLCGGFASRCDFLTDSGDEILLKAIEARRY 571

Query: 684 AKHRGGNH---VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEA 740
                 +     +       R +++     +  A+ +  +     PI+     E++G E 
Sbjct: 572 GVRNNTHITNAKDIQVSEEDRKEQLGWLSCVSRAILDQNIITYSQPIVEAGTHEMIGQEC 631

Query: 741 LIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINI 800
           L++        +   +F+ +  +  +   ++  M++     +   +           IN+
Sbjct: 632 LVRIMESDGTIVPPGKFLPMIADTHLYTRLSRHMIKNTIGYMADKQS-------PFSINL 684

Query: 801 ASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           + +DLL ++  E ++  IS     P+R+ L   ES  + +  R   +    R +G  + +
Sbjct: 685 SPQDLLSDKTLEVLETAISGMN-DPTRLGLEVLESDQIKDYGRMIEVCDHFRSLGARIIV 743

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDI 918
           DDFG+  S +  +  +    +K +GSL+    +   +  I   ++ + +      +A+ +
Sbjct: 744 DDFGSGYSNIDEIIKLEPQIIKLDGSLIRNIDKDQKQRNIASQLVRLCQVFNAKTVAEFV 803

Query: 919 YGEIDIKELTRMGCDYIQDSHVASP 943
           + +   +   +MG DY+Q  +   P
Sbjct: 804 HNQQVCEIAEQMGVDYLQGYYFGEP 828


>gi|283851478|ref|ZP_06368759.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. FW1012B]
 gi|283573216|gb|EFC21195.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio sp. FW1012B]
          Length = 348

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 131/322 (40%), Gaps = 7/322 (2%)

Query: 371 LVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR--- 427
           L   L ++   +     QH        Q +    ER    +    D V+   +       
Sbjct: 11  LAAELAVLSRRVAELEEQHR-ECLETEQALRQSEERYRRLLESVTDYVYTVTVRDGVPVA 69

Query: 428 VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRA 487
            +  P+   + G  +G        WL  +   DR       +  +         E R+  
Sbjct: 70  TSHGPNCVAVTGYTAGEYAENPLLWLTMVPDEDRGAVLAHAEKVLCGEAAPF--EHRIIH 127

Query: 488 ADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSF 547
            D    ++        +++G ++ Y GI NDITE++++ E I   +  D LTG+PNR  +
Sbjct: 128 KDGSIRYVRNTPVVHRDASGALVAYDGIINDITERRRAEELITRMSLHDGLTGLPNRALY 187

Query: 548 LDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPD 607
           +DRL   L L+      R  V  ID+D++K +ND  G   GD VL    RR+   ++  D
Sbjct: 188 MDRLRQTLSLAER-QGERVAVYFIDLDRFKGVNDDYGHEAGDKVLAEAARRLVACVRRSD 246

Query: 608 ILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSK 667
            +AR+ G+ F  +     +       A  M  ++  P  +L     + AS+G A +    
Sbjct: 247 TVARIGGDEFVALTPGVGDPANAEAIAGKMVAAMREPFTVLGHICQLGASVGLALFPEDA 306

Query: 668 ITSSEMLKNAELAMYHAKHRGG 689
                +L+ A+ AMY AK  GG
Sbjct: 307 GRGGLLLRLADAAMYAAKKAGG 328


>gi|288554784|ref|YP_003426719.1| PAS:GGDEF domain-containing protein [Bacillus pseudofirmus OF4]
 gi|288545944|gb|ADC49827.1| PAS:GGDEF domain protein [Bacillus pseudofirmus OF4]
          Length = 389

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 158/374 (42%), Gaps = 11/374 (2%)

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
           G + A++     ILI +  +      T  L +  +   L G +    + +    I+    
Sbjct: 5   GRKTALIFTVITILITLSLLSYTWTATVVLLSIPVVWWLGGIIDDASLKMEQLEIK-TET 63

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG--LASGSMHGPIR 450
               ++      E     +      ++ + +  + +  +  +  + G       +    +
Sbjct: 64  LEAANEKFQEKKEEYETLLDSLEGAIFQFSLSSNEMYVSEGMKELYGPDYTPERL----K 119

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
           +W   I  + +          +     ++++E  +   +    W++    P+++++G++ 
Sbjct: 120 DWKASILPDYQLKVEEHEQRLLAGESSKVEFE--IVHPEQGRKWIMQIATPIADNDGEVT 177

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           + IG   DIT +K     +   AF D LT +PNR+S    +   L  S    +   ++M 
Sbjct: 178 KIIGQMLDITSRKTLENELKQMAFYDELTDLPNRKSLYRHIEKALARSKRHQHT-FSLMF 236

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K +ND +G   GD +L  +  R+ E ++  D+++R+ G+ F ++   E    +I
Sbjct: 237 IDLDDFKIVNDTMGHDAGDMLLKEVVSRLNESIREEDLISRIGGDEFIVLFE-ETCKEEI 295

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A  + + +AMP  + E+E  ++ SIG + +         ++++A+ AMY AK  G N
Sbjct: 296 ESIAERILERVAMPYKINEKEANISLSIGVSMYPDDGEDKDTLIEHADQAMYFAKFNGKN 355

Query: 691 HVESFRVSSFRSDR 704
             + +       + 
Sbjct: 356 SYKLYTPDLSDMEY 369


>gi|54297380|ref|YP_123749.1| hypothetical protein lpp1425 [Legionella pneumophila str. Paris]
 gi|53751165|emb|CAH12576.1| hypothetical protein lpp1425 [Legionella pneumophila str. Paris]
          Length = 532

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  + LA++N E Y VY P+    +E   G+E L++W++     I    F+  AE   
Sbjct: 279 SLQGAIKLAIKNEEFYPVYQPLFDCDEERFTGVEVLLRWENEDSQIIMPDFFIAEAEATG 338

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I L ++E   ++  S  ++ +     +  NI++    D+        LI K   SP
Sbjct: 339 LIVPITLQIIEIAFKEFRSLLEERSY--FHLAFNISALHFTDSIFFNQFHKLIEKYNISP 396

Query: 826 SRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +I    +E  ++  N       +  LR+ G SL +DD+GT  + +SYL + PF+ +K +
Sbjct: 397 HQIIFEITERELLDKNDTTFINKMQELRQAGFSLAVDDYGTGHASISYLQHFPFNYLKID 456

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +          ++  +II MAK +    IA+ +  +     L   G    Q  + + 
Sbjct: 457 KLFVQAIGSNDIIESLNDAIIQMAKGLNLVTIAEGVETKDQANYLANNGVRLQQGWYYSK 516

Query: 943 PLGFNSILKLLK 954
            L    +  LLK
Sbjct: 517 GLSIAELTALLK 528


>gi|307946780|ref|ZP_07662115.1| cyclic di-GMP phosphodiesterase YahA [Roseibium sp. TrichSKD4]
 gi|307770444|gb|EFO29670.1| cyclic di-GMP phosphodiesterase YahA [Roseibium sp. TrichSKD4]
          Length = 521

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 4/248 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +   AV N E    Y P++ + +  + G E L++W  P    IS  +FM  AE    I  
Sbjct: 246 EFNKAVRNGEFVPFYQPVMDIENGTLRGCEVLMRWQRPTGEIISPGQFMAYAEANGHIFE 305

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++ + A ++     Q   P + + IN+ +    D ++   ++    K+  S  ++ 
Sbjct: 306 MTRQLMLKTAEEMGELYSQ--NPDLKLSINLFAGHFHDRQVVADLKKAYEKSDISFQQVV 363

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E   + + + +R ++  L+ +GI + LDD GT    ++YL  +  D +K +   + 
Sbjct: 364 VEVTERYPLEDMDLARKIISELQALGIRVALDDVGTGHGGMAYLQKLGVDIIKIDKMFID 423

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             GS E    I+ S++ +A N+   IIA+ +  E  I  L  +G    Q  + A P+   
Sbjct: 424 PLGSDENSTTIVDSMVELADNLGMGIIAEGVEEEDQIDRLLELGVTAAQGYYFAKPMNAE 483

Query: 948 SILKLLKE 955
             +   K+
Sbjct: 484 DYIAFAKK 491


>gi|322614624|gb|EFY11553.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620143|gb|EFY17015.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623437|gb|EFY20276.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322629265|gb|EFY26044.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322631985|gb|EFY28739.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322637277|gb|EFY33979.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322642161|gb|EFY38770.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322646273|gb|EFY42787.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322652459|gb|EFY48813.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322653378|gb|EFY49711.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660473|gb|EFY56709.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322664625|gb|EFY60818.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669322|gb|EFY65472.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322670868|gb|EFY67001.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678894|gb|EFY74949.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322681922|gb|EFY77947.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322688048|gb|EFY84014.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194403|gb|EFZ79598.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323197061|gb|EFZ82203.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323203386|gb|EFZ88411.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323206869|gb|EFZ91822.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323210361|gb|EFZ95253.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323214603|gb|EFZ99354.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323223160|gb|EGA07503.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224869|gb|EGA09132.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323230073|gb|EGA14193.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323233811|gb|EGA17900.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323238495|gb|EGA22553.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244183|gb|EGA28192.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323246343|gb|EGA30326.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323251969|gb|EGA35832.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257966|gb|EGA41645.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323259938|gb|EGA43569.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265049|gb|EGA48548.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272612|gb|EGA56019.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 516

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|204927318|ref|ZP_03218520.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323983|gb|EDZ09178.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 524

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 129/275 (46%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 243 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKYGSCGGVEALMRWPQPDGRFI 302

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 303 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 359

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  + +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 360 DIE--VLRTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 417

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 418 LQQLPVDYLKIDRTFIDTIDTSSNDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 477

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 478 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 512


>gi|320108511|ref|YP_004184101.1| diguanylate phosphodiesterase [Terriglobus saanensis SP1PR4]
 gi|319927032|gb|ADV84107.1| diguanylate phosphodiesterase [Terriglobus saanensis SP1PR4]
          Length = 689

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 10/258 (3%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            D   A+   E    Y P++ L   E+   E L +W+HP  G I  +EF+ +AE    I 
Sbjct: 21  TDAQRALALGEFVPYYQPVVVLRSGEVDRFEVLARWNHPTMGMIMPNEFISVAERDGWIG 80

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +L +      +        P+ + +NI+   L D  L   + ++   T +S S++
Sbjct: 81  DLMHSVLGQAFTAAAAQP-----VPVRLAVNISPVQLHDLRLPRQIASIAESTRFSLSQL 135

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +   ES +  N E +  +   L ++G  L+LDDFGT  S L +L  +PFD +K + S +
Sbjct: 136 TIEVIESALTDNIEHALTIANELHEMGCKLSLDDFGTGYSSLLHLQSLPFDELKVDRSFV 195

Query: 889 TGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T   +   I+ +++ + +++  T +A+ +      + L  +GCD+ Q      P+  
Sbjct: 196 GSMTVRRESRKIVAAVVGLGQSLGLTTVAEGVETCEQDEMLLWLGCDHGQGWLYGKPVIS 255

Query: 947 NSILKLLKE---RFPLVK 961
           +++   L     R PL++
Sbjct: 256 DNLALALAGEHVRQPLLQ 273



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 8/158 (5%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
             Q +       Q      +     V  +  + +  D     +  +   A + G+     
Sbjct: 402 AAQDITDLKKSIQARQESEDHFRYMVELNPQVPFIVDPEGRALQVSHGWAGLTGMQGEEW 461

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
            G    WL  +H  D +  R  L          +  ++RVRA    + WM  R +   + 
Sbjct: 462 RG--YGWLDALHPEDVERTRETLLQGYAT-GAPMDTQYRVRAPGGLWRWMRARSQARLDE 518

Query: 506 NGDILRYIGIANDITEQKKSLE-----GILCNAFQDNL 538
           NG IL + G   DI +QK + +          A  D +
Sbjct: 519 NGKILCWYGGVEDIHDQKDAEDALRKCEAQLQAIFDAV 556



 Score = 49.9 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 9/188 (4%)

Query: 347 IFIWFI---GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGI-FS 402
           + +W     G      K + +D +  AL G  V   +L      + V       +G+   
Sbjct: 235 MLLWLGCDHGQGWLYGKPVISDNLALALAGEHVRQPLLQALNPWRQVFRGR--EEGLPAQ 292

Query: 403 DGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRD 462
              +      GS   +   D     V      A I G+      G     L         
Sbjct: 293 RLAQLQAVFDGSPVALAFLDKNSRCVNLNQKFADIDGIPVEEHFGKTVKELF---PELYP 349

Query: 463 NFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQ 522
             R  ++  +           R          +++  +P  +  G+++     A DIT+ 
Sbjct: 350 IVRDPIERALRGESIPNVEVVRPAPGGEGEITLMVSYQPAHDEAGEVIGVSIAAQDITDL 409

Query: 523 KKSLEGIL 530
           KKS++   
Sbjct: 410 KKSIQARQ 417


>gi|145297888|ref|YP_001140729.1| EAL domain-containing protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850660|gb|ABO88981.1| EAL domain protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 493

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 3/249 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ++L  A+   E      P++   D    G E L++W HP+ G IS   F+ +AE+  +I 
Sbjct: 246 QELRRALAQREFIPYLQPVVTGDDGHWCGCEVLMRWQHPRQGMISPDRFIPLAEDSGLIV 305

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++ ++       +            NI +    D  L E  +  I     +P ++
Sbjct: 306 PMTRLLMAQVRDQFAG-KAHTLPRGFHFGFNICASHCKDLSLVEDCRDFIDGFKANPIKL 364

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   E +  L   L ++G+ + +DDFGT  S L+YL     D +K + S +
Sbjct: 365 VLELTERELIVADEVTDRLFAELHQLGVFIAIDDFGTGHSSLTYLQQFQVDFLKIDQSFV 424

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ ++I +A  +   ++A+ +  E+    L      ++Q      P+  
Sbjct: 425 GMIGSDALSSHIVENVIDLATRLGLMLVAEGVENEVQAAYLRARQVTFLQGYFYGRPMPM 484

Query: 947 NSILKLLKE 955
               K L  
Sbjct: 485 KEFAKQLAA 493


>gi|207724745|ref|YP_002255142.1| signal transduction protein eal domain [Ralstonia solanacearum
           MolK2]
 gi|206589968|emb|CAQ36929.1| signal transduction protein eal domain [Ralstonia solanacearum
           MolK2]
          Length = 534

 Score =  255 bits (652), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 109/251 (43%), Gaps = 7/251 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+E   +   +  ++ L D  + G E L +W     G +  + F+ +AE   +I 
Sbjct: 10  ERLLDALERDAIEPAFQCLVDLRDHGLKGFEVLSRWTEADLGEVPPAVFIPVAERHGLID 69

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + + +L +  +   +W         F+  N++   L +  L   ++       +  +R+
Sbjct: 70  RLLVRVLSKACQAAAAW-----GGDFFLAFNLSPLQLQNTALFSLIREAAESGRFPLARL 124

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ESV++G+   +  L+G L++ GI + LDDFG   S L  L    FD +K + S +
Sbjct: 125 QMEITESVLVGDLGAAASLVGELKRAGIRIALDDFGIGFSNLERLQAFAFDKIKIDASFV 184

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ SII + +++   ++A+ +        L  +GC   Q      P+  
Sbjct: 185 QHMEGDSDSRKIVASIIGLGQSLGVDVVAEGVETRAQADILRGLGCGMGQGWLFGHPVPA 244

Query: 947 NSILKLLKERF 957
                 L+ RF
Sbjct: 245 PDAAATLQRRF 255



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  V       + I    E    A   S DI W            P       ++    
Sbjct: 378 IMIDVTDQRRAERAIRESEEHFRRASDLSPDIAWAARPDGTVNYMGPTFGAARNMSVED- 436

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              I  W   +H  DR   R    +++   +   + +FR++  D  +HW+  R RP   +
Sbjct: 437 --RIEAWYGIMHPEDRVRVRREWLAWLPCGQ-PFETDFRIQWPDGTWHWVNSRARPHYGA 493

Query: 506 NGDILRYIGIANDITEQKKSLEGILCN 532
           +G I R+ G+  DIT ++     I   
Sbjct: 494 DGTIDRWYGLIVDITGRRALERRIAVL 520


>gi|207722538|ref|YP_002252974.1| hypothetical transmembrane protein [Ralstonia solanacearum MolK2]
 gi|206587720|emb|CAQ18302.1| hypothetical transmembrane protein [Ralstonia solanacearum MolK2]
          Length = 729

 Score =  255 bits (652), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 119/253 (47%), Gaps = 3/253 (1%)

Query: 703 DRVMIKEDLCLA-VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             + +  DL  A     +++L + P +      + G EAL++W HP  G ++    + +A
Sbjct: 460 MALALASDLEYAIHAEEQIFLEFQPQVDSQTGRVFGAEALLRWQHPVLGRVAPPIVVTLA 519

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +++ +I  + L  L         WRD        I +N++ + L D E    +  ++ + 
Sbjct: 520 DDIDLIDRLGLHTLSLACHQRSLWRDSVP-EDFVIAVNLSPRQLQDREFHRKVIDILHRE 578

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS I+L  +ES ++     +   L RLR+ G+ + LDDFG   + L YL  +P DTV
Sbjct: 579 QLPPSMIELEITESTMLLPDFHAIDNLKRLREAGVKVALDDFGMGHTSLHYLRELPLDTV 638

Query: 882 KFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + SL    +      I+RSI+ +++ +  + + + I     +K L+ +GCD  Q    
Sbjct: 639 KIDRSLADVSAGSVNEHIVRSIVNLSRTLNLSTVVEGIENAQQLKRLSALGCDRFQGYFF 698

Query: 941 ASPLGFNSILKLL 953
           + PL  N  L  +
Sbjct: 699 SRPLAANVCLAFV 711


>gi|46201620|ref|ZP_00208178.1| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 559

 Score =  255 bits (652), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 93/538 (17%), Positives = 204/538 (37%), Gaps = 38/538 (7%)

Query: 416 DIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYR 475
           D++ + D   + +        +LG  + ++ G   +    IH  D       L    G  
Sbjct: 23  DVLVELDSQGNTLFAVGAAMALLGRGAKALTGQPLS--KIIHPGDHTALSQALKQMTGGE 80

Query: 476 RGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           R R     R+   D +   + +      +    ++  +G        K+           
Sbjct: 81  RVR-NAIIRILRPDGKGAEVSLSGYRHPSKPDMLMVALGHPGGFHAHKE----------- 128

Query: 536 DNL--TGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL- 592
           D +  TG+ ++ SF     ++L+ +A DD  + T++     +  KI+ + G A   + L 
Sbjct: 129 DRVGETGLLDKDSFQAMAASLLESAAPDDPYQLTLV-----ELPKIDALSGDAEAQEALN 183

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L  R+  L    D + +L   +FG++  +  ++  I+         +           
Sbjct: 184 TELGNRLRALSVGGDAVGQLDEGKFGVLHSAAVSADSISQSVTQAAAVVLP------DAA 237

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYH----AKHRGGNHVESFRVSSFRSDRVMIK 708
            + A++       + +   E  +     +      A++ G        +    S  V   
Sbjct: 238 PIQATLATLVLDVADVPPEEAARALTYTLNRFALEAENGGNLADLMKDLQPRLSATVKQM 297

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            D+   V   +  L++ PI+ L    +   E L+++        S  E +  AE+  M+ 
Sbjct: 298 NDVRNTVTGGDFDLLFQPIVDLWTGVVHHFECLVRFKGEDNK--SPYETVTFAEDTGMVG 355

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +++ +LER    + S    AN   +   +N++   L D  +   ++ +++ T     R+
Sbjct: 356 MLDMALLERAIAFMRS--SVANNDSLKFAVNLSGYSLSDPTVVRRLKEILTTTTDLRKRL 413

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
               +ES  + + +    ++  +RK G  + LDDFG   +   YL  +  D VK +GS +
Sbjct: 414 VFEMTESAQVRDLKAVNDVIQIIRKQGHEVCLDDFGAGHAAFHYLRALKVDNVKIDGSYI 473

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
             +  + + ++ +++I+ +   +  T  A+ +        L  +   + Q  +   PL
Sbjct: 474 KDAMRSNEDVSFIKAIVGLCTELGVTTTAEYVEDAETANLLKLLKVRFGQGWYFGKPL 531


>gi|254695456|ref|ZP_05157284.1| EAL domain protein [Brucella abortus bv. 3 str. Tulya]
          Length = 594

 Score =  255 bits (652), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEKADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|306840823|ref|ZP_07473570.1| EAL domain-containing protein [Brucella sp. BO2]
 gi|306289218|gb|EFM60467.1| EAL domain-containing protein [Brucella sp. BO2]
          Length = 530

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P++ L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLMELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQCRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|83749156|ref|ZP_00946159.1| Hypothetical Protein RRSL_00812 [Ralstonia solanacearum UW551]
 gi|207739416|ref|YP_002257809.1| signal transduction protein eal domain [Ralstonia solanacearum
           IPO1609]
 gi|83724152|gb|EAP71327.1| Hypothetical Protein RRSL_00812 [Ralstonia solanacearum UW551]
 gi|206592791|emb|CAQ59697.1| signal transduction protein eal domain [Ralstonia solanacearum
           IPO1609]
          Length = 534

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 108/251 (43%), Gaps = 7/251 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+E   +   +  ++ L D  + G E L +W     G +  + F+  AE   +I 
Sbjct: 10  ERLLDALERDAIEPAFQCLVDLRDHGLKGFEVLSRWTEADLGEVPPAVFIPAAERHGLID 69

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + + +L +  +   +W         F+  N++   L +  L   ++       +  +R+
Sbjct: 70  RLLVRVLSKACQAAAAW-----GGDFFLAFNLSPLQLQNTALFSLIREAAESGRFPLARL 124

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ESV++G+   +  L+G L++ GI + LDDFG   S L  L    FD +K + S +
Sbjct: 125 QMEITESVLVGDLGAAASLVGELKRAGIRIALDDFGIGFSNLERLQAFAFDKIKIDASFV 184

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ SII + +++   ++A+ +        L  +GC   Q      P+  
Sbjct: 185 QHMEGDSDSRKIVASIIGLGQSLGVDVVAEGVETRAQADILRGLGCGMGQGWLFGHPVPA 244

Query: 947 NSILKLLKERF 957
                 L+ RF
Sbjct: 245 PDAAATLQRRF 255



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  V       + I    E    A   S DI W            P       ++    
Sbjct: 378 IMIDVTDQRRAERAIRESEEHFRRASDLSPDIAWAARPDGTVNYMGPTFGAARNMSVED- 436

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              I  W   +H  DR   R    +++   +   + +FR++  D  +HW+  R RP   +
Sbjct: 437 --RIEAWYGIMHPEDRVRVRREWLAWLPCGQ-PFETDFRIQWPDGTWHWVNSRARPHYGA 493

Query: 506 NGDILRYIGIANDITEQKKSLEGILCN 532
           +G I R+ G+  DIT ++     I   
Sbjct: 494 DGTIDRWYGLIVDITGRRALERRIAVL 520


>gi|320354616|ref|YP_004195955.1| PAS/PAC sensor-containing diguanylate cyclase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123118|gb|ADW18664.1| diguanylate cyclase with PAS/PAC sensor [Desulfobulbus propionicus
           DSM 2032]
          Length = 447

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 158/387 (40%), Gaps = 17/387 (4%)

Query: 311 ARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIF--IWFIGLWMAITKRLDNDIIQ 368
           A +   ++    T   +    +   R VL      LI        + M    ++   ++ 
Sbjct: 74  ASLPPTALAPVRTLLAVPLHHQELIRGVLFALRSPLIAYPAHTQQMAMLYGGQISAALVN 133

Query: 369 PALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRV 428
             L              V + +       + + +  ER S  +    DI+    +  D  
Sbjct: 134 AHLYQ-----------AVCRELFERMRAEKALRTREERFSALIRSVSDIIAVLSVDGDID 182

Query: 429 TTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
             +P    + G A+ ++ G  R+ L ++H  DR   + +L          L    R+R  
Sbjct: 183 YVSPAAEAMWGCAAATLQG--RSVLDHVHAEDRTIMQGLLVQAGMRPGLTLNGVVRLRQG 240

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFL 548
              + +  + +  + + +  I   +   +D+TE+K     +   AF D LTG+ NR  F+
Sbjct: 241 KGGWRYFEVVLVNLLD-DPAISGMVATYHDVTERKVYESELTKLAFHDPLTGLANRACFM 299

Query: 549 DRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDI 608
           +RL   L  +     L   V   D+D +K+IND LG A GD VL  +  R+   L+  D 
Sbjct: 300 NRLRRALTRADA-QGLSVAVFFFDLDNFKQINDTLGHACGDQVLRLVADRVQGSLRREDT 358

Query: 609 LARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKI 668
            ARL G+ F +++   +   ++   A  +  S+  P +    E+ V  S+G A    +  
Sbjct: 359 AARLGGDEFTVLVEGVSTLEQVLPLAERVLHSLQTPFSHGGHELLVGGSMGVALSVPNVD 418

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESF 695
           ++ ++++ A+LAMY AK+ G      F
Sbjct: 419 SAEDLVRKADLAMYRAKNSGKGKYTVF 445


>gi|302671316|ref|YP_003831276.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395789|gb|ADL34694.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 540

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 118/243 (48%), Gaps = 1/243 (0%)

Query: 714 AVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLF 773
           A+E   + + Y P+IR +  ++ G E+L +W  P  G +S  +F+   E+   I  ++ F
Sbjct: 30  AIEKGWVKVFYQPVIRTLTGQLCGAESLARWVDPVLGFLSPDKFIGPLEDSGQIHKLDSF 89

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           ++E++  DI    ++     +   +N +  D  + ++   ++  ++K       I +  +
Sbjct: 90  IVEKVCSDISERLEKNLDT-VSASVNFSKLDFENADMLRVVENAVAKYNIPRDYIHVEIT 148

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           ES+++ +    + ++   R  G  + +DDFG+  S L++L    FDT+K +   +   T+
Sbjct: 149 ESMIVSDAILMKKVIDGFRNAGFEVWMDDFGSGYSSLNHLKDYEFDTIKMDMEFLASFTD 208

Query: 894 KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
           K  AI+ S I MAK+I    +A+ +  E  ++ L  +GC  +Q  +   P         +
Sbjct: 209 KSKAIMTSAITMAKDIGILTLAEGVENEEQVEFLNSIGCGKLQGYYYGKPQPIEDFFDHI 268

Query: 954 KER 956
            E+
Sbjct: 269 AEK 271


>gi|127511666|ref|YP_001092863.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
 gi|126636961|gb|ABO22604.1| diguanylate cyclase with PAS/PAC sensor [Shewanella loihica PV-4]
          Length = 446

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 138/320 (43%), Gaps = 8/320 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
           ++      Q I  D  R   +   +    WDW +  D +  +  I  I G   G +    
Sbjct: 128 LVRHHNLEQDIRQDIARYHHSQYFAKIGTWDWQVGTDTLYWSDAIFGIFGYKLGEVTPSY 187

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
             +   +H  DRD  +      +         E+R+   D   HW+      + +S+G +
Sbjct: 188 EFFYSRVHPEDRDKVKAGEARCIAT-GENHDEEYRILWPDGSVHWVRETGNLVKDSDGQL 246

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L+ +G+  DIT++K     +   A QD LTG+PNR     RL+  +  ++     R  ++
Sbjct: 247 LKMVGVVRDITQEKALHHKLEKMAHQDPLTGLPNRLQLELRLSEAIREASQSGG-RLGLI 305

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI----SEN 625
            ID++++K IND LG  VGD VL++   R+  L    D++AR+ G+ F ++L        
Sbjct: 306 FIDLNQFKAINDSLGHQVGDRVLMTAATRLQSLKGSEDLVARIGGDEFVMLLPQWPADRP 365

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
              ++A  A A+ +  A P+    R I   ASIGFA +         +L  A+ AMY AK
Sbjct: 366 LEEEVARLAEALFERFAEPVIQTGRGIA--ASIGFAIYPDHAGHMDALLHVADQAMYIAK 423

Query: 686 HRGGNHVESFRVSSFRSDRV 705
            RG N               
Sbjct: 424 GRGDNQYHLGPDHRMDLGHR 443


>gi|322633666|gb|EFY30406.1| RNase II stability modulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
          Length = 243

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 116/241 (48%), Gaps = 5/241 (2%)

Query: 719 ELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
           +L + Y P I     E+  LEAL++W  P+ G I   EF+  AEE  +I  +  +++  +
Sbjct: 1   QLLIHYQPKITWR-GEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDV 59

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            R I  WRD+     + + +N +++ L D  L   ++  +    +    I +  +ES ++
Sbjct: 60  VRQIAKWRDKGIN--LRVAVNFSARQLADQTLFTALKQALYDLNFEYCPIDVELTESCLI 117

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RI 896
            N   +  ++ +  ++G  + LDDFGT  S LS L   P D VK + + +    ++    
Sbjct: 118 ENDTLALSVIQQFSQLGAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQPLSQ 177

Query: 897 AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKER 956
           +++R+I+ +A+ +   +IA+ +    +   LT+ G +  Q    A P+   S  +  K  
Sbjct: 178 SLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYKRY 237

Query: 957 F 957
            
Sbjct: 238 Q 238


>gi|256015127|ref|YP_003105136.1| EAL domain protein [Brucella microti CCM 4915]
 gi|255997787|gb|ACU49474.1| EAL domain protein [Brucella microti CCM 4915]
          Length = 530

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|318606241|emb|CBY27739.1| rtn protein [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 509

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   ++  +G E L++W HP  G I  ++F+ +AE+  +I  +
Sbjct: 264 LKHALENNEFIPYLQPIVSGKEQCWIGCEVLMRWQHPGQGLIQPNQFIPMAEDSELIVPM 323

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 324 TRSIMQQVSAKFAPYVNQLP-EGFHFGFNISANHFRDLSLVDDCRNFIQAFGGNKINITL 382

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++     +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +  
Sbjct: 383 ELTERKLIVADATTDKLFAELHALGVFIAIDDFGTGHSSLTYLQKFKVDFLKIDQSFVGM 442

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  E  ++ L     DY+Q      P+  N 
Sbjct: 443 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENETQMRYLQAHNVDYLQGYMYGRPMPMNE 502

Query: 949 ILKLL 953
             + L
Sbjct: 503 FARYL 507


>gi|225686180|ref|YP_002734152.1| EAL [Brucella melitensis ATCC 23457]
 gi|256059434|ref|ZP_05449636.1| EAL [Brucella neotomae 5K33]
 gi|256262693|ref|ZP_05465225.1| EAL domain-containing protein [Brucella melitensis bv. 2 str. 63/9]
 gi|261323401|ref|ZP_05962598.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|225642285|gb|ACO02198.1| EAL [Brucella melitensis ATCC 23457]
 gi|261299381|gb|EEY02878.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|263092479|gb|EEZ16732.1| EAL domain-containing protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326410520|gb|ADZ67584.1| EAL protein [Brucella melitensis M28]
 gi|326553811|gb|ADZ88450.1| EAL protein [Brucella melitensis M5-90]
          Length = 530

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|306845639|ref|ZP_07478208.1| EAL domain-containing protein [Brucella sp. BO1]
 gi|306273960|gb|EFM55787.1| EAL domain-containing protein [Brucella sp. BO1]
          Length = 530

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 119/260 (45%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A+ DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMAADDLAQCRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK++   I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLNLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|317493049|ref|ZP_07951473.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919171|gb|EFV40506.1| EAL domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 734

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 166/443 (37%), Gaps = 21/443 (4%)

Query: 512 YIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVI 571
            I +A   T Q++        +  D +  +PN +     L           + R  V  +
Sbjct: 308 IILMAAVNTRQRRLYIKTQRASMIDPVIQLPNLRCLHHDLKQ---------HERSVVCFL 358

Query: 572 DIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIA 631
            I     +    G+ +  +    L   + +++   + + +L      + L +++ +  + 
Sbjct: 359 RIANLDTLCRTYGMQLRLEYKQRLASMMKKVMANNEGVYQLPSYDLVLRLNNKSAAETLK 418

Query: 632 DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNH 691
               AM+      +      + +   IG+ +          ++         +   G   
Sbjct: 419 RLNDAMKAF---RLLWNGLPLRLHYGIGYCTVRQPLEHIYTIIGELSSMAERSLITGNAE 475

Query: 692 VESFRVSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
                  + +     +V +   +   ++     L+  PI     +     E L++     
Sbjct: 476 STHLNAQTLQEGIHSKVAMLHHIQNGLDKDRFMLMAQPIEGFRGDR--YYEVLLRLQDEH 533

Query: 749 WGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDN 808
              I  ++F  + +E  +   ++L++L      I   R++   P +   IN+    L   
Sbjct: 534 GNIIMPNDFFPVVQEFGLNYDVDLWVLNNTLAFINENRERL--PAVCFAINLTPSTLARP 591

Query: 809 ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
            L + +  ++++    P +I L  +ES +    E +   L +LR++G  + +DDFGT  +
Sbjct: 592 TLVQDIARILAQYQVEPYQIILEITESNITQTKELTSKTLSQLRQMGCRIAIDDFGTGFA 651

Query: 869 LLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKE 926
               L +I  D +K +GS +     +     I+ ++  +A+  +  ++A+ +  E    +
Sbjct: 652 SYDRLKHIEADILKIDGSFVRQLMDSPIDQQIVSAMCQIARLKKLLVVAEYVEDEAQKFQ 711

Query: 927 LTRMGCDYIQDSHVASPLGFNSI 949
           L  +G DYIQ   +  P   +S+
Sbjct: 712 LKALGVDYIQGYLLGKPQPLSSL 734


>gi|56414494|ref|YP_151569.1| rtn protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197363416|ref|YP_002143053.1| rtn protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|56128751|gb|AAV78257.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094893|emb|CAR60430.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 516

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 130/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGGCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D +K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDYLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 504


>gi|322418606|ref|YP_004197829.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M18]
 gi|320124993|gb|ADW12553.1| diguanylate cyclase/phosphodiesterase with extracellular sensor
           [Geobacter sp. M18]
          Length = 657

 Score =  255 bits (651), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 177/446 (39%), Gaps = 30/446 (6%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ    EG+   A+QD +TG+ NR+ F  ++   L     D++ R  ++++ I   + +N
Sbjct: 225 EQASRAEGLQERAYQDPVTGLGNRRFFESQVNAELGR--QDEDARGLLILLRIHGLEALN 282

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKFPD--ILARLSGNRFGIILISENNSLKIA---DFAI 635
              G+  GD++L  +   +   L       L+RL+G  FGI L + + S       + A 
Sbjct: 283 QKRGLQAGDELLKRVATLLKSSLNAYADTALSRLTGGDFGIFLPNISPSEGGIIGTEIAA 342

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            + +       L +    +  +    S      T + +L  A+LA+  A  +G N  E  
Sbjct: 343 QLGRVAMEKTALDDNIGHLGIASCLGSI-----TLTRLLAEADLALSSALQKGANSWELR 397

Query: 696 RVSSFR----SDRVMIKEDLCLAVENSELYL-VYHPIIRLMDEEIVGLEALIQWDHPKWG 750
            V+         +   K+ L  A+E   + L     +      +++ LE   +       
Sbjct: 398 VVTGDSETLPQGQQHWKDALVKALEERRITLDAQGVVENGPARKVLQLELFARIMQ-DGK 456

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            + ++ FM +AE L ++ AI+  ++E   +    +R  A      + IN++   L D   
Sbjct: 457 PLDAALFMPVAERLKLVSAIDRIVIEEAMKV--DFRSMAVD---RVAINLSPSSLEDGAF 511

Query: 811 CEGMQALISKTLYSPS--RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCS 868
              + + +      P    +   FSE   + + +  R     +R+ G  + LD +G   S
Sbjct: 512 RGWLFSFLK--GLPPEAPHVSFEFSEFAAVQHLQLIRDFGAAVRECGHGIGLDHYGRSFS 569

Query: 869 LLSYLGYIPFDTVKFNGSLMTGST---EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
            L YL  +  + VK + +     +         + S+  +A +I+  ++A+ +  E    
Sbjct: 570 KLGYLQSLRPEYVKIDRAYTGELSGGENDSRFYVASLCSVAHSIDIKVVAEGVESEEQAA 629

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILK 951
            L  +  D +Q      P    S   
Sbjct: 630 VLKELNLDAMQGYFFGRPQPLASYRA 655


>gi|325982532|ref|YP_004294934.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nitrosomonas sp. AL212]
 gi|325532051|gb|ADZ26772.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nitrosomonas sp. AL212]
          Length = 410

 Score =  255 bits (651), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 122/251 (48%), Gaps = 5/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
             D+  A+ + EL   Y P + +   +++G E L++W HPK G I    F+ IAEE  +I
Sbjct: 146 AADIQSALAHHELVNYYQPKVSVATGDVIGAETLVRWHHPKDGIILPDRFIHIAEENNLI 205

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   +L++       W +      + I IN++ ++L   +  + +   ++++   P +
Sbjct: 206 DDLTHQVLQQAITQAKQWHENGLT--LRIGINVSMENLASLDFQDFVVNRVTESGLPPQK 263

Query: 828 IKLSFSESVVMGNPERS-RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           I L  +ES +MG   R    +L RLR     L++DDFGT  S L+ L  IPF+ +K +  
Sbjct: 264 IVLEVTESQLMGTDTRIPLEILTRLRLKRFHLSIDDFGTGHSSLAQLRDIPFNELKIDQG 323

Query: 887 LMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +  + E     AI  + + M K +   I+A+ +    D + L   GCD  Q + ++ PL
Sbjct: 324 FVHRACEDDTLRAIYDASLSMGKQLGMDIVAEGVEDRNDWELLRETGCDMAQGNFISGPL 383

Query: 945 GFNSILKLLKE 955
             +   + + E
Sbjct: 384 LPDDFPRWMNE 394


>gi|200390395|ref|ZP_03217006.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199602840|gb|EDZ01386.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 516

 Score =  255 bits (651), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  + D    G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKDGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVSDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+  N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMEANDFMSWLGKSAQRQNGLLK 504


>gi|168232300|ref|ZP_02657358.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194468483|ref|ZP_03074467.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194454847|gb|EDX43686.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205333500|gb|EDZ20264.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 516

 Score =  255 bits (651), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSNDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|161502433|ref|YP_001569545.1| hypothetical protein SARI_00474 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863780|gb|ABX20403.1| hypothetical protein SARI_00474 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 729

 Score =  255 bits (651), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 149/431 (34%), Gaps = 24/431 (5%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
                    A  + LT +PN ++    L               +V  + ++  + ++   
Sbjct: 317 WLNRQWHSRALTEPLTQLPNLRALEQFLLQ---------GAGQSVCYLRMENLEFLSRHY 367

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +       + R +  LL+  + +  L G+   ++L         A     +      
Sbjct: 368 GMLMRVHCEREVFRALQPLLQEKEKVFHLPGSELLLVLAG---PETEARLQYMINVLNNR 424

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKN----AELAMYHAKHRGGNHVESFRVSS 699
            I      + +     + ++   + T   +L      AE +  H +     H        
Sbjct: 425 KIYWNNTGLEMEYGASWGTFDGRQETLQPLLGQLSWLAEQSCSHRRVLSLTHSIEAASGQ 484

Query: 700 FRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFML 759
                + + + +  A+E   L L   PI     +   G + ++       G +  ++F+ 
Sbjct: 485 TTERVLRL-QKIRQALERGALVLYAQPIRDAQGK---GYDEILTRLRCDEGIMMPNQFIP 540

Query: 760 IAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALIS 819
           +  +  +    ++ ++E + + +               +N+    LL  E    +  L  
Sbjct: 541 LIAQFNLSVRFDMQVVEALLQWLSVHPSA--EQGARFSVNLMPLTLLQKETASRIIQLFK 598

Query: 820 KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFD 879
           +    P+ + +  +E     + E S   + +LRK G+ + +DDFGT  +    L  +  D
Sbjct: 599 RYGVPPASVIIEITEEQAFSHSEISMYNINQLRKFGLKIAIDDFGTGYANYERLKRLKAD 658

Query: 880 TVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            +K +G  +           I++SI  +AK    +++A+ +        L ++G   +Q 
Sbjct: 659 IIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVETPEQRDLLLQLGVHSLQG 718

Query: 938 SHVASPLGFNS 948
             +  P     
Sbjct: 719 YLIGRPRPLGE 729


>gi|114199067|gb|ABI54127.1| LapD [Pseudomonas fluorescens]
          Length = 648

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 174/433 (40%), Gaps = 22/433 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ +  E +   ++QDNLTG+ NR+ F  +L   +       +    ++++ +     +N
Sbjct: 224 EQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQASSGY--LLLLRVKDLAGLN 281

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
             LG    D +L ++  ++    +      +++ R+ G  F ++        +    A  
Sbjct: 282 QRLGGQRTDQLLQAVGEQLLRECERYPETHNLVTRIRGGEFAVLAPGLV-REEALQLAQN 340

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++A        ++   ASIG A +     +   +L+  + A+  A+ +G        
Sbjct: 341 LEAALASLHATGATDVASVASIGLAPFV-HGDSPQAVLQLGDQALAQAESQGEPGWACLD 399

Query: 697 VSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNI 752
            S+      D       L  A+ +    L + P++   D ++V   + L +        I
Sbjct: 400 HSAVASVGDDHHAWHTLLDQALNHQRFELYFQPVVAAQDTQVVLHYKVLSRLLDEHGQTI 459

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+   E       ++  MLE++ R +    +        + +N++S  L D +   
Sbjct: 460 PAGRFLPWLERFGWTARLDRLMLEQVLRQMAGHEES-------LALNLSSATLADPQALN 512

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++       SR+ L   E  +         L  RLR++G SL+L  FG + S++  
Sbjct: 513 KIFEILRAHSNLGSRLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGN 571

Query: 873 LGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +    +K +GS +    +   +   + +I   A +I+  +IA+ +  E ++  +  M
Sbjct: 572 LSRLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELAVIREM 631

Query: 931 GCDYIQDSHVASP 943
           G   +Q   V  P
Sbjct: 632 GLFGVQGQLVGEP 644


>gi|296100688|ref|YP_003610834.1| EAL domain-containing protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055147|gb|ADF59885.1| EAL domain-containing protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 513

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 115/253 (45%), Gaps = 7/253 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+   +L + Y PII + + + VG EAL++W       +S +EF+ +AE+  M +
Sbjct: 265 RLLHRALNKRQLCVHYQPIIDIKNNQCVGAEALLRWPGFNGPVMSPAEFIPLAEKEGMSE 324

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  +++E +  D+  +      P ++I IN+++ D   + L   +            +I
Sbjct: 325 RITDYVVEEVFSDLGHFLAA--HPDLYISINLSATDFHSSRLIAMISDKARHYAVRAQQI 382

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 383 KIEVTERGFI-DVPKTTPVIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDILKIDKSFI 441

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T    +  I   II MA+++    IA+ +     +  L + G  + Q  H A  +  
Sbjct: 442 DTLTTNSTSHLIAEHIIEMAQSLRLKTIAEGVETAEQVSWLLKRGVQFCQGWHFAKAMPP 501

Query: 947 NSILKLLKERFPL 959
              +    ++ PL
Sbjct: 502 QEFMTW--QQQPL 512


>gi|256375444|ref|YP_003099104.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
 gi|255919747|gb|ACU35258.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Actinosynnema mirum DSM 43827]
          Length = 692

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 105/574 (18%), Positives = 231/574 (40%), Gaps = 32/574 (5%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
             +  + A     + +     R   A   S   +   D+    V     +A +L      
Sbjct: 142 VRLALLAARQRVERVLRLSEARFREAFDSSALGIAITDLRGMCVRANDSLARMLDEPKEV 201

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
           + G  R  +   H +D         +    R  + + + R+   D    W+ + +  + +
Sbjct: 202 LVG--RRLVELFHPDDAAPLGAAYRAVAVGRVDQFREQRRLVRVDGDPVWVHLAVSLLRD 259

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
            +G    ++ +A D++E       +      D LTG+ NRQ F  RL  +L  S      
Sbjct: 260 EDGSPAFHVTMAEDVSELHLLRRNLDHQLLHDALTGLSNRQHFTTRLEVMLKASRAG--- 316

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL-KFPDILARLSGNRFGIILIS 623
             T+  +D+D +  +N+ LG A GD VLV +  R+  ++ +   ++AR+ G+ F +++ +
Sbjct: 317 -ITLYQLDLDAFSVVNNGLGHATGDRVLVEVAHRLRGVVEREEALVARIGGDEFALVVDN 375

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              + ++      +  ++A P+      + ++A+IG     +S     ++L+ A+  +  
Sbjct: 376 SPTTPRVPAMVERVNAALAGPLESG---VELSAAIGVVDRPASDWPVVDLLRAADSTVRR 432

Query: 684 AKHRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
           AK  G      +  +     R ++     L  A+   E+ + Y P++ L   E  GL A 
Sbjct: 433 AKSLGTRQWLPYDRAEEARSRELLGRAARLPRALAADEVEVEYQPVVDLATGERTGLLAR 492

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++WD      +   E   +AE      A+ L+ LER AR+  +W        + + + ++
Sbjct: 493 VRWDG-----LGHEECAELAEVGGSSPALGLWALERAAREAATWA-----GSVPLHVELS 542

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSF-SESVVMGNPERSRLLLGRLRKIGISLTL 860
                D +L   +  ++++T  +P  ++L   + + ++   + +      LR  G++  L
Sbjct: 543 PALTTDPDLVASVSRVLAETGLAPGGLRLRLHTRAALVAEDDNA----QVLRDNGVTTGL 598

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMA---KNIETTIIA 915
             F    + LS +  +  D + F  ++    + + +   + R++  +A   ++    I+A
Sbjct: 599 WAFNGGQAELSLVDALEVDALVFEPAVARRLSGQAVEGLLHRAMDGLAAVVRSAGVEIVA 658

Query: 916 KDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
             +    D+      G           P+  + +
Sbjct: 659 PCVDSAQDLAWWRGAGATSGFGEQFGGPVAGHEL 692


>gi|83643845|ref|YP_432280.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631888|gb|ABC27855.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 402

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 4/250 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L   + +  L L Y P + +  E +VG+EAL +W HP+ G +    F+ +AEE  ++ 
Sbjct: 150 SELRQGLNDGHLTLFYQPQVDMKTEAVVGVEALARWKHPQHGLLGPGAFVPLAEESNLVG 209

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
                ++ +    +  W+ +     + + INI+S  +   +L   ++          SRI
Sbjct: 210 DFTTAVIAQAIDQMQKWKQK--QLNLQVAINISSSSISILDLPHLLEHYCQHHKVEASRI 267

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E+ V  +      +L R++  G+ L++DDFGT  S L  L  IPFD +K +GS +
Sbjct: 268 TLEITETQVGQDMVTMLEVLTRIKLKGLCLSIDDFGTGYSSLERLQRIPFDELKIDGSFV 327

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            GS   +   AI  S   + K +  +I+A+ +  + D     ++GCD  Q   +A P+  
Sbjct: 328 HGSYRDQAARAIFDSSAALGKQLGMSIVAEGVENQDDWDYAAKLGCDIAQGFFIAQPMAP 387

Query: 947 NSILKLLKER 956
                 L+ R
Sbjct: 388 EDFESWLQRR 397


>gi|311281389|ref|YP_003943620.1| EAL domain-containing protein [Enterobacter cloacae SCF1]
 gi|308750584|gb|ADO50336.1| EAL domain protein [Enterobacter cloacae SCF1]
          Length = 528

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+   +L L Y PII +   + VG EAL++W       +S +EF+ +AE+   I+
Sbjct: 273 RLLMRALTRRQLCLHYQPIIDIKSNQCVGAEALLRWPGFDGPVMSPAEFIPLAEKEGFIE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  +++E +  D+  +    N P ++I IN+++ D   + L   +     +      +I
Sbjct: 333 QITDYVVECVFTDLGFFLQ--NNPQLYISINLSASDFHSSRLISLISEKARQYRVRAQQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 391 KIEVTERGFI-DVPKTTPVIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDILKIDKSFV 449

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T    +  I+  II MA++++   IA+ +        L + G  Y Q  + A  +  
Sbjct: 450 DTLTTNSTSHLIVEHIIEMAQSLQLKAIAEGVETHEQAAWLLKRGVQYCQGWYFARAMPP 509

Query: 947 NSILKLLKE 955
            + ++ L+ 
Sbjct: 510 QAFIQWLQR 518


>gi|300691467|ref|YP_003752462.1| hypothetical protein RPSI07_1818 [Ralstonia solanacearum PSI07]
 gi|299078527|emb|CBJ51182.1| conserved membrane protein of unknown function, EAL domain
           [Ralstonia solanacearum PSI07]
          Length = 736

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/265 (25%), Positives = 126/265 (47%), Gaps = 5/265 (1%)

Query: 703 DRVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             V +  DL  A++   +++L + P +      + G EAL++W H   G ++    + +A
Sbjct: 460 MAVALASDLEDALKTEGQIFLEFQPQVDCQTGRVFGAEALLRWQHSVLGRVAPPIIVTLA 519

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +++  I  + L +L        +WRD        I +N++ + LLD E    +  ++ + 
Sbjct: 520 DDIDQIDRLGLHILSLACHQRSAWRDVLPD-DFVIAVNLSPRQLLDREFHRKVIDILHRE 578

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              PS ++L  +ES V+     +   L RLR+IG+ + LDDFG   + L YL  +P D V
Sbjct: 579 HLPPSVLELEITESTVLRPDVNAIDNLKRLREIGVKIALDDFGMGHTSLHYLRELPLDKV 638

Query: 882 KFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + SL   G       I+RSI  +++++  +++ + +  E  +  L  +GCD  Q    
Sbjct: 639 KIDRSLADVGPGSVNEHIVRSIANLSRSLNLSMVVEGVENEQQLGRLWALGCDRFQGYFF 698

Query: 941 ASPLGFNSILKLL--KERFPLVKNT 963
           + PL  N  L+ +    R    + +
Sbjct: 699 SRPLAANVCLEFVLDANRGAGFRRS 723


>gi|117924807|ref|YP_865424.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Magnetococcus sp. MC-1]
 gi|117608563|gb|ABK44018.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Magnetococcus sp. MC-1]
          Length = 571

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 124/297 (41%), Gaps = 9/297 (3%)

Query: 401 FSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYI 456
               ER  LA      S + +   D  R  V   P  + I G     + G     L    
Sbjct: 269 REKEERLKLAAKIFNHSQEGLVVLDAERIIVDVNPAFSYITGYTREEVIGRSPELLRSQR 328

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
           H  D   +++I         G  Q E   R  + +     + +  +   N  I  YIG+ 
Sbjct: 329 H--DAAFYQSIWQQAENQ--GNWQGEIWRRRKNGEEFPEWLSLSIIRGENQQISHYIGLF 384

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
           +DIT +K + E +   A  D LTG+PNR    DRL   +  +   +  +  V+ ID+D +
Sbjct: 385 SDITTRKIAEEKLKHQAHHDPLTGLPNRSLLEDRLQQAVSKARRYEG-KIAVLYIDLDHF 443

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K +ND  G   GD VL  ++ RI   L+  D  AR+ G+ F  +L        +   A  
Sbjct: 444 KPVNDNYGHEAGDAVLREISARIRYELRQSDTAARVGGDEFVAVLTEIREEHLVMGVAQK 503

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVE 693
           +  +I  P+N       V  SIG + +     + +++LK+A+ AMY AK  G N   
Sbjct: 504 LIHAIQKPVNFGNESFQVGCSIGISLYPIHGNSITKLLKSADTAMYRAKQEGRNRFC 560



 Score = 60.7 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              ++ ++      Q + S  +R        G+ +   D  +  +   P    +L  +  
Sbjct: 128 LARLRSIIKLERAMQQVRSSEKRLRDLTASLGEGLLSVDNAQRIIFLNPAGEKLLEYSES 187

Query: 444 SMHGPIRNWLPYIH----INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
           ++H    N     H    ++D+ +   +L + +     ++  E   R    +   +    
Sbjct: 188 ALHLTTLNEQLIPHTCGSLHDQQSADHML-AALRGETEQISGETLFRTRTGKLIPISFNA 246

Query: 500 RPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
            P+ + +  +   +    DI +Q++  E +   A
Sbjct: 247 APILDGH-FLSGGVLSFRDIRDQREKEERLKLAA 279


>gi|168261240|ref|ZP_02683213.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205349715|gb|EDZ36346.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 516

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 130/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+  N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMEANDFMSWLGKSAQRQNGLLK 504


>gi|119944258|ref|YP_941938.1| cyclic-di-GMP regulatory protein [Psychromonas ingrahamii 37]
 gi|119862862|gb|ABM02339.1| regulatory protein for cyclic-di-GMP, EAL domain [Psychromonas
           ingrahamii 37]
          Length = 406

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 117/248 (47%), Gaps = 4/248 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            +D+  A+ N +L   Y P + + + +++G+E L++W HP+ G +   +F+ +AE+  +I
Sbjct: 146 ADDVRAAIVNHQLVNYYQPKVDVANGKVMGVETLVRWRHPQDGLVFPDQFIGVAEDNGLI 205

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   ++         W D      + + +N++ ++L   E  + +    +     P  
Sbjct: 206 NDLTREVISDAFSQTKIWLDAG--LSLRVAVNLSMENLDSLEFTDYVTTAAATAGIIPDD 263

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           I L  +ES ++ +      +L RLR     L++DDFGT  S L  L  +PF+ +K +   
Sbjct: 264 IVLEVTESRLIKSLTTPMEVLTRLRLKRFHLSIDDFGTGHSSLMQLLDLPFNELKVDQGF 323

Query: 888 MTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G+       +I  + + +A+ +    +A+ +  + D   +   GCD  Q  ++A P+ 
Sbjct: 324 VHGAASNEKLCSIYNASLSLAQQLGMKSVAEGVEDQADWDFIRSSGCDLAQGYYIAKPMP 383

Query: 946 FNSILKLL 953
            + I   +
Sbjct: 384 ADEIHDWI 391


>gi|312128690|ref|YP_003993564.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778709|gb|ADQ08195.1| diguanylate cyclase/phosphodiesterase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 551

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 192/436 (44%), Gaps = 23/436 (5%)

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK---YKKINDVLGIAVGD 589
           A+ D +TG+PN+         +     +  N    V+V+DI+    ++ +N     ++ +
Sbjct: 120 AYFDMITGLPNKLQLEIFFDKLRKDVPSHFN-EIAVVVVDIENLSEFEMVNF---YSLSN 175

Query: 590 DVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLE 649
            +L  +  ++   L     +A++  N+F I+         +  +   + + I     L+ 
Sbjct: 176 VILKDIGYKLKNGLPEKSFVAKIEENKFAILFYDYGCRDLLLQYIKVIEEIIDGRWYLVG 235

Query: 650 REITVTASIGFASWTSSKITSSEMLKNAELAMYHAK--HRGGNHVESFRVSSFRSDRVMI 707
            E+ + + +G A + +   +  E+LK+A  A+  A+       H  S   +S  S  + +
Sbjct: 236 EELELKSIVGVAFYPNDGNSIHEVLKSATKALEQARIRDDKKVHFTSEEENSKFSFCISV 295

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            ++L  AV      LVY P++ L   ++ G E  ++W +P+ G IS+ EF+ IA++  MI
Sbjct: 296 SKELKKAVLKKNFLLVYQPLVDLKKHKVAGAEVFLRWINPQKGIISAKEFISIAQKEGMI 355

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA-----LISKTL 822
             I  ++L+ +A+D+  + ++      FI +N++    LD+ + E + +        K  
Sbjct: 356 PEIEEWVLDTVAQDMEDF-EKTCTEDFFISLNVS---FLDSYVVERIFSNKVFTYCDKYN 411

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
                +    S+  +  N      +   +++ G  + +DD+ +    +  + Y P D VK
Sbjct: 412 ---DMMVFEISQQDIDANLSECLKVAEEVKQKGFRIIVDDWCSDNIAIDTIRYFPVDAVK 468

Query: 883 FNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            +   +  +   +    I++ ++ +A  ++  +IA+ +      K    +GCD  Q    
Sbjct: 469 VDNKCIESAVFDKSIGTIVKGVVDIAHALKIKVIAEGVETPFHYKIAKDLGCDLAQGFLF 528

Query: 941 ASPLGFNSILKLLKER 956
           + PL  +  L+  +  
Sbjct: 529 SKPLFRSEFLEFYRRH 544


>gi|300694067|ref|YP_003750040.1| signal transduction protein eal domain [Ralstonia solanacearum
           PSI07]
 gi|299076104|emb|CBJ35415.1| conserved hypothethical protein, putative signal transduction
           protein eal domain [Ralstonia solanacearum PSI07]
          Length = 531

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 7/251 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+    +   +  ++ L D  + G E L +W     G +  + F+  AE   +I 
Sbjct: 10  ERLLDALARDAIEPAFQCLVDLRDHGLKGFEVLSRWTEADLGEVPPTVFIPAAERHGLID 69

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + + +L +  R   +W         F+  N++   L +  L   ++A      +   R+
Sbjct: 70  TLLVRVLSKACRAAATW-----GGDFFLAFNLSPLQLQNAALFSLIRAAAESGRFPLERL 124

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES ++G+   +  L+G L++ GI + LDDFG   S L  L    FD +K + S +
Sbjct: 125 QMEITESALVGDMGAAASLVGELKRAGIRIALDDFGIGFSNLERLHAFAFDKIKIDASFV 184

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ SII + +++   ++A+ +        L  +GC   Q      P+  
Sbjct: 185 QNMEDDSDSRKIVASIIGLGQSLGVDVVAEGVETRAQADILRGLGCGLGQGWLFGHPVPA 244

Query: 947 NSILKLLKERF 957
                 L+ RF
Sbjct: 245 LDAAATLQRRF 255



 Score = 91.9 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 4/147 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  V       + I    E    A   S DI W            P       ++    
Sbjct: 378 IMIDVTEQRRAERAIRESEEHFRRASDLSPDIAWAARPDGTVNYMGPTFGAARNMSVED- 436

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              I  W   +H +DR   R    +++       +  FR++  D  +HW+  R RP   +
Sbjct: 437 --RIEAWYGIVHPDDRVRVRQEWLAWLP-SGQPFETNFRIKWPDGSWHWVNSRARPHYGA 493

Query: 506 NGDILRYIGIANDITEQKKSLEGILCN 532
           +G I R+ G+  DIT ++     I   
Sbjct: 494 DGAIDRWYGLIVDITGRRALERRIAVL 520


>gi|168465417|ref|ZP_02699299.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195631698|gb|EDX50218.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 516

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|261856752|ref|YP_003264035.1| diguanylate cyclase/phosphodiesterase [Halothiobacillus
           neapolitanus c2]
 gi|261837221|gb|ACX96988.1| diguanylate cyclase/phosphodiesterase [Halothiobacillus
           neapolitanus c2]
          Length = 875

 Score =  254 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 170/458 (37%), Gaps = 29/458 (6%)

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L  +G    I   +K  E +   A +D LT + N++ F   L   +D +         + 
Sbjct: 414 LNVVGSVRAI---EKHTEDLEFYATRDPLTQMYNQRMFWSLLDYEMDRAQRH-GYSFGLF 469

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
           VIDID +K +ND  G   GD  L  ++  + + L+  DILAR  G+ F  IL        
Sbjct: 470 VIDIDDFKVVNDSYGHTFGDTFLCKVSECLHDALRTGDILARYGGDEFTAILPEAGEKEC 529

Query: 630 IADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
           I      + +   + +       + V+ SIG     +   ++  +   A+  MY AK  G
Sbjct: 530 IMVADRLLARIRNLSMKTPDGHSVGVSLSIGIGIGPTHTDSARGLFSIADAQMYRAKLAG 589

Query: 689 GNHVESFRVSS--FRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEI--------- 735
            N                  I++   L    E     +++ PI  + D  +         
Sbjct: 590 KNQFALPNPDEPLADLHDKPIEDQDILEALTEEQPPRILFQPIFAIGDASVEPLENLLLE 649

Query: 736 -VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER-IARDIISWRDQANMPP 793
            VG+E L Q +      + + +F+ + E     +  +  +++  I   + +  +      
Sbjct: 650 RVGMEVLAQLNIGDR-WVMARDFLGMVERRGQAENFDRQLMKALICTQVATHCNGL---- 704

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
             I +NI+ + +        +  L+     + SR+    +E   + +       +  L  
Sbjct: 705 --IFVNISPRTVRAKSFLADIAHLMDTVGMARSRLVFELNERESLADLNLFDRFIEELHG 762

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIET 911
                 +D       +  +L     D VK N   +T  ++  +  A +  ++ +A+ +  
Sbjct: 763 FDFKFAIDQTTPGHWIFQHLRRHTVDYVKINVDWLTNRSQIARDRAFIDCLLGLARALSV 822

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI 949
           TIIA++I     +      G  ++Q +  A  +    +
Sbjct: 823 TIIAQEIETAEQLSAARAAGISWVQGALFAEEMPLAEL 860


>gi|52841699|ref|YP_095498.1| hypothetical protein lpg1469 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628810|gb|AAU27551.1| Rtn protein [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 532

 Score =  254 bits (650), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  + LA++N E Y VY P+    +E   G+E L++W++     I    F+  AE   
Sbjct: 279 SLQGAIKLAIKNEEFYPVYQPLFDCDEERFTGVEVLLRWENEDSQIIMPDFFIAEAEATG 338

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I L ++E   ++  S  ++ +     +  NI++    D+        LI K   SP
Sbjct: 339 LIVPITLQIIEIAFKEFRSLLEERSY--FHLAFNISALHFTDSVFFNQFHKLIEKYNISP 396

Query: 826 SRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +I    +E  ++  N       +  LR+ G SL +DD+GT  + +SYL + PF+ +K +
Sbjct: 397 HQIIFEITERELLDKNDTTFINKMQELRQTGFSLAVDDYGTGHASISYLQHFPFNYLKID 456

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +          ++  +II MAK +    IA+ +  +     L   G    Q  + + 
Sbjct: 457 KLFVQAIGSNDIIESLNDAIIQMAKGLNLVTIAEGVETKDQANYLANNGVRLQQGWYYSK 516

Query: 943 PLGFNSILKLLK 954
            L    +  LLK
Sbjct: 517 GLSIAELTALLK 528


>gi|116328665|ref|YP_798385.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330678|ref|YP_800396.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121409|gb|ABJ79452.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124367|gb|ABJ75638.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 404

 Score =  254 bits (650), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 114/250 (45%), Gaps = 5/250 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL-CMI 767
           E++  A+   +  L Y P I      + G E+L++W HP+ G I    F+ I E    ++
Sbjct: 154 EEIEQAIREDQFLLYYQPKIDFKTGNVSGFESLVRWFHPERGLIFPDSFIPILESYPSLM 213

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++ +       W  Q     I + +N++   +    L E +  +I       S+
Sbjct: 214 DAMTEKLILQALSQCSVWNKQFPG--IAVAVNVSPVSMNKLILPETISKMIESFGLKNSQ 271

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +E+ ++ N   +  +L R+R  GI L++DDFG   S L  +   PF  +K + S 
Sbjct: 272 LIVEVTETQLLENITSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRYPFTELKIDRSF 331

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++ +   + A  I ++ I +   +  T++A+ I   +  + + + GCD  Q    + P+ 
Sbjct: 332 VSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAVVGELMKKHGCDKGQGYFYSKPMP 391

Query: 946 FNSILKLLKE 955
            ++ L  L  
Sbjct: 392 ADATLPFLSS 401


>gi|307610171|emb|CBW99722.1| hypothetical protein LPW_14901 [Legionella pneumophila 130b]
          Length = 532

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 5/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  + LA++N E Y VY P+    +E   G+E L++W++     I    F+  AE   
Sbjct: 279 SLQGAIKLAIKNEEFYPVYQPLFDCDEERFTGVEVLLRWENEDSQIIMPDFFIAEAEATG 338

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I L ++E   ++  S  ++ +     +  NI++    D+        LI K   SP
Sbjct: 339 LIVPITLQIIEIAFKEFRSLLEERSY--FHLAFNISALHFTDSVFFNQFHKLIEKYNISP 396

Query: 826 SRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +I    +E  ++  N       +  LR+ G SL +DD+GT  + +SYL + PF+ +K +
Sbjct: 397 HQIIFEITERELLDKNDTTFINKMQELRQAGFSLAVDDYGTGHASISYLQHFPFNYLKID 456

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +          ++  +II MAK +    IA+ +  +     L   G    Q  + + 
Sbjct: 457 KLFVQAIGSNDIIESLNDAIIQMAKGLNLVTIAEGVETKDQANYLANNGVRLQQGWYYSK 516

Query: 943 PLGFNSILKLLK 954
            L    +  LLK
Sbjct: 517 GLSIAELTVLLK 528


>gi|205351660|ref|YP_002225461.1| rtn protein [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207855825|ref|YP_002242476.1| rtn protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205271441|emb|CAR36255.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|206707628|emb|CAR31912.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|326626691|gb|EGE33034.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 524

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 243 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 302

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 303 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 359

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 360 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 417

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 418 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 477

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 478 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 512


>gi|284048622|ref|YP_003398961.1| diguanylate phosphodiesterase [Acidaminococcus fermentans DSM
           20731]
 gi|283952843|gb|ADB47646.1| diguanylate phosphodiesterase [Acidaminococcus fermentans DSM
           20731]
          Length = 558

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 121/247 (48%), Gaps = 3/247 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  +  A+E   + L Y P++R +   + G EAL +W  P  G IS + F+   EE+  
Sbjct: 25  IQTHIDEALEKGWIRLYYQPVVRALSRTLAGYEALARWQDPVRGLISPAAFIPALEEIHA 84

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I  ++L+M+++I   +   R+    P + I  N++  D  D ++   +   + +      
Sbjct: 85  IHKLDLYMVDQICS-LYGPRNDLGFPTVPISFNLSRLDFFDCDIHAEISRRVDRAGVPHG 143

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + +  +ESV + +      +L + R+ G SL +DDFG+  S L+ L    FDT+K +  
Sbjct: 144 NLAIEITESVFVQDMSVIAPILDQFRQDGYSLWMDDFGSGYSSLNVLKDYAFDTIKLDMG 203

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP--L 944
            +   +++   I+ S+I MAK++    +A+ +  E   + L  +GC  +Q    + P  +
Sbjct: 204 FLRRFSDRARVIVESVIRMAKDLNIQTLAEGVETEAQAEFLRNIGCSLLQGFLFSKPFEM 263

Query: 945 GFNSILK 951
               +++
Sbjct: 264 TREKVVQ 270


>gi|189425976|ref|YP_001953153.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189422235|gb|ACD96633.1| diguanylate cyclase with PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 461

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 7/316 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLA- 441
           G T+    L      +   +   + S AV  S   +   +         P  + + G + 
Sbjct: 139 GHTMRASTLRDVTARRAKEAQLRKLSAAVEHSPASIVITNRDGAIEYVNPAFSRLTGYSM 198

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
             ++    R           + +R +    +  R    + EF  +  D    W +  I P
Sbjct: 199 QEALGQNPRILKAGDQPE--EFYRELWAVLL--RGEEWRGEFHNKRKDGSLFWEMASISP 254

Query: 502 MSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATD 561
           + N+ G+I+ ++ +  +ITE+K+  + +   A  D LTG+PNR+ FLDRL+  + ++   
Sbjct: 255 ILNNKGEIISFVAVKENITERKELRDRLEQMAQFDMLTGLPNRRMFLDRLSQTVAIAQRT 314

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
           +  R  ++ +D+D +K+IND  G   GD VL ++  R+   ++  D + R+ G+ F IIL
Sbjct: 315 EQ-RFALLFVDLDGFKRINDSYGHEAGDRVLKTVAARLAACIRMSDTVGRMGGDEFTIIL 373

Query: 622 ISENNSLKIADFAIAMRKSIAMPINL-LEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            +  +       A  +  +++ PI L   ++ TV +SIG + +         +L  A+ A
Sbjct: 374 STLAHYEDAGQVADKILDALSRPITLPDGQQDTVGSSIGISVFPEDAQDGDGLLATADDA 433

Query: 681 MYHAKHRGGNHVESFR 696
           MY  K  G N    + 
Sbjct: 434 MYKVKRNGKNSYCFYH 449



 Score = 48.4 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 9/169 (5%)

Query: 365 DIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIV 424
           + +  A +    ++++L+   ++  ++   +  + +    E        S + +      
Sbjct: 5   NALYQAYMQQCGVVLLLVCGALLAVMIWYLHARRRLCMSEEHFRNLAEASFEGIILSRNG 64

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                +    + + G +   +    R+    I           +            YE  
Sbjct: 65  GVICDSNERASEMSGFSRQELL--ERSLYCLIAPEYHTLVHRAIADGFDGP-----YEIE 117

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
              AD   + + +R +    S G  +R      D+T ++     +   +
Sbjct: 118 GVRADGSRYLLEVRGKT-FQSGGHTMRA-STLRDVTARRAKEAQLRKLS 164


>gi|270262259|ref|ZP_06190531.1| EAL domain-containing protein [Serratia odorifera 4Rx13]
 gi|270044135|gb|EFA17227.1| EAL domain-containing protein [Serratia odorifera 4Rx13]
          Length = 538

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 116/262 (44%), Gaps = 10/262 (3%)

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
           +R+ +   +  A+ + E  +   PII       +G+E L++W + + G IS   F+ +AE
Sbjct: 266 NRMSLSYHIGHAITHREFRVYCQPIINAETGRCIGVETLLRWKNKRQGWISPDVFIPLAE 325

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL-ISKT 821
           +  +I A+  +++  +  ++  +      P  +I IN+A++      L + ++ + +   
Sbjct: 326 QHGLIIALTRYLMGTVVENLQLFP---PRPSFYISINVAAEHFNAVTLIDDIRRIWLPAQ 382

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E   +   +     +  L+++GI L +DDFGT  S LSYL  +  D +
Sbjct: 383 PMP--SLMLELTERTALSEIQY--EQIKTLKEMGIMLAIDDFGTGHSSLSYLKKLSPDVL 438

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +               +  +II +A  ++  ++A+ +  E     L     + +Q  +
Sbjct: 439 KIDRGFTAAIGTDAINATVTDTIITLAHKLKLKLVAEGVETEEQADYLRSHDVNALQGFY 498

Query: 940 VASPLGFNSILKLLKERFPLVK 961
            A P+  N     L++    ++
Sbjct: 499 FAKPMPINVFPLWLQQYESKLR 520


>gi|144899870|emb|CAM76734.1| PAS/PAC domain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 639

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 399 GIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGP-IRNWLP 454
            + +  E+  L    V  + + V   +   +     P    I    +  + G     W  
Sbjct: 344 AMKAAEEKLKLTAKVVESASEAVVITNAYNEIEYVNPAFTAITEYTAEEVLGQNPALWRS 403

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
             H  D + ++++  +      GR + E   R    +F+   + I  + +  G +  YI 
Sbjct: 404 GRH--DAEFYQSMWAAL--NDVGRWRGEIWNRRKSGEFYAEWLSIVAIKDDAGVVSHYIA 459

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           I +DIT +K+  E +   A  D LTG+PNR  F+DRL+  +  S  D   +  +  ID+D
Sbjct: 460 IFSDITHRKEDEERVWRQANFDALTGLPNRALFVDRLSQAIRQSKRDGK-KFALFFIDLD 518

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K++ND LG A GD +L    +R+ + ++  D +ARL+G+ F  I+   ++S   +  A
Sbjct: 519 GFKQVNDSLGHAAGDLLLQQTAQRLVDCVRSSDTVARLAGDEFTCIVQGVHDSTDTSMVA 578

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             + + +A P +L  +   V  S+G A +       +E+LK A+ AMY  K RG N  E 
Sbjct: 579 RKILERLAAPFDLDGKPAHVQGSVGIALYPDDGADGAELLKMADEAMYRVKRRGKNSFEF 638


>gi|256032701|pdb|3HVB|A Chain A, Crystal Structure Of The Dual-Domain Ggdef-Eal Module Of
           Fimx From Pseudomonas Aeruginosa
 gi|256032702|pdb|3HVB|B Chain B, Crystal Structure Of The Dual-Domain Ggdef-Eal Module Of
           Fimx From Pseudomonas Aeruginosa
          Length = 437

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 165/422 (39%), Gaps = 7/422 (1%)

Query: 526 LEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGI 585
            E +   + QD +TG+ NR  FLD +   +  + T      T+  I ++ Y  +    G+
Sbjct: 6   EEKLREVSSQDPVTGLYNRSHFLDLMDAAVQQAVTARKPS-TLAYIHLNGYPSLQADHGL 64

Query: 586 AVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPI 645
           +  D +L  L   + E       LAR   + F  +   +      A     ++K      
Sbjct: 65  SGIDLLLGQLAGLMREQFGEEADLARFGDSIFAALFKGKTPEQAQAALQRLLKKVENHLF 124

Query: 646 NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRV 705
            L  R    T SIG A        + +++  A      A  +GG+ ++ +  +   +   
Sbjct: 125 ELNGRSAQATLSIGVAGLDEKTAKAQDVMNRAHRCADDAARKGGSQIKQYNPAEELAAAA 184

Query: 706 M---IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +   L  A+E +   L++ P+I L  +     E L++  +P+   +  +EF+  A+
Sbjct: 185 QRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAK 244

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
           E  + + I+ +++    + +   R + +   +F+   ++S  L D  L   +   +    
Sbjct: 245 EAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVH--LSSASLQDPGLLPWLGVALKAAR 302

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
             P  +    SE+      ++++ L   L  +     +  FG   +  + L ++    +K
Sbjct: 303 LPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIK 362

Query: 883 FNGSLMTGSTE-KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            +GS +    + +   IL+ +I      +   I   +     +  L + G  YIQ  ++ 
Sbjct: 363 IDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQ 422

Query: 942 SP 943
            P
Sbjct: 423 GP 424


>gi|218660499|ref|ZP_03516429.1| putative sensory box/GGDEF family protein [Rhizobium etli IE4771]
          Length = 335

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 150/336 (44%), Gaps = 15/336 (4%)

Query: 633 FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHV 692
               +++ +   I   +  +   ASIG +           +L  +++A+YHAK  G N +
Sbjct: 1   IIEDVQRRLRKKIRYGQEMLQSGASIGVSWS--GDRRVRNLLAESDVALYHAKQLGRNRI 58

Query: 693 ESFRVSSFR--SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWG 750
           E F          +  + E+L L +E  E+   Y   +     +++G EAL +W HP  G
Sbjct: 59  EFFTRQLQEDLRSKRRLVEELKLGLERGEIIPYYQVQLSARTRQVIGFEALARWKHPDKG 118

Query: 751 NISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNEL 810
            ++   F+ IA+E  +   I+  +L+R+  D   W+ +    P  I +NI++  L D  L
Sbjct: 119 VLAPGVFLKIADEHGLAAEIDAAILKRVLEDRQFWQLRGLAVP-RIAVNISASRLADPAL 177

Query: 811 CEGMQALISKTLYSPSRIKLSFSESVVMGNPER-SRLLLGRLRKIGISLTLDDFGTKCSL 869
              ++ L       P  I     E++ + + E      +  ++++GI + +DDFG+  + 
Sbjct: 178 LRKLKTL----DIPPGAIVFELVETIFLDDSEETLLDHVDDIKRLGIDIEIDDFGSGHAS 233

Query: 870 LSYLGYIPFDTVKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
           L  L  +    +K +  L+    S++++  ++ SI+ +AK ++  +IA+ I  E     L
Sbjct: 234 LIGLVKLRPKRLKIDRQLVAEVVSSQEQRRVIGSIVEIAKALDVEVIAEGIETESHATVL 293

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKNT 963
            ++GCD +Q      P       +L     PL    
Sbjct: 294 AQLGCDGLQGYAFGYPAPAAETERLFS---PLTSGA 326


>gi|157371051|ref|YP_001479040.1| EAL domain-containing protein [Serratia proteamaculans 568]
 gi|157322815|gb|ABV41912.1| EAL domain protein [Serratia proteamaculans 568]
          Length = 538

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 125/293 (42%), Gaps = 10/293 (3%)

Query: 672 EMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
            ML  A L  +       + + ++ V    ++R+ +   +  A+   E  +   PII   
Sbjct: 235 SMLALAALPRHIPLSLLISLLAAYVVYLLTANRMSLSYHIGHAISRREFRVYCQPIINAE 294

Query: 732 DEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANM 791
               VG+E L++W + + G IS   F+ +AE+  +I A+  +++  +  ++  +      
Sbjct: 295 TGRCVGVEMLLRWKNKRQGWISPDVFIPLAEQHGLIIALTRYLMSTVVENLQLFP---PR 351

Query: 792 PPIFILINIASKDLLDNELCEGMQAL-ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
           P  +I IN+A++      + + ++ L +         + L  +E   +   +     +  
Sbjct: 352 PSFYISINVAAEHFNGVTIIDDIRRLWLPAHPMP--SLMLELTERTALSEIQY--EQIKT 407

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKN 908
           L+++GI L +DDFGT  S LSYL  +  D +K +               +  +II +A  
Sbjct: 408 LKEMGIMLAIDDFGTGHSSLSYLKKLSPDVLKIDRGFTAAIGTDAINATVTDTIITLAHR 467

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVK 961
           ++  ++A+ +        L     + +Q  + A P+  N     L++    ++
Sbjct: 468 LKLKLVAEGVETAEQADYLRSRDVNALQGFYFAKPMPINVFPLWLQQYESRLR 520


>gi|163800425|ref|ZP_02194326.1| Rtn protein [Vibrio sp. AND4]
 gi|159175868|gb|EDP60662.1| Rtn protein [Vibrio sp. AND4]
          Length = 506

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 3/254 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                   +  ++  A+EN+E      PI+  +  EI G+E L++W HP  G +    F+
Sbjct: 248 WLSRRPSNLYLEIERAMENNEFVPYAQPILNSISREIQGIEILLRWQHPVQGVVGPDLFI 307

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
             AE+  +I  I   ++ + A++I  W+D+    P  + INI+ +      L    Q  I
Sbjct: 308 PKAEQSGLIIPITHQLMRQAAQEISLWKDKLPK-PFHVGINISPQHCSKQTLVSVCQEFI 366

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
                    + L  +E   +   + +  +  +L+ IG  + +DDFGT  S L  L  +  
Sbjct: 367 DIVDSEDVNLVLELTEREALNYCDLTDEIFTQLKNIGCKIAIDDFGTGHSSLVNLRKVDL 426

Query: 879 DTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D +K + + +       I   +L+++I ++ N+   ++A+ +  E     L   G  Y+Q
Sbjct: 427 DYLKIDQTFVRDIGVDTITGHLLQNMITLSHNLSLDVVAEGVETESQADYLRDKGVSYLQ 486

Query: 937 DSHVASPLGFNSIL 950
               A P+  N  L
Sbjct: 487 GFLFAKPMLLNDFL 500


>gi|221633786|ref|YP_002523012.1| putative sensory box protein [Thermomicrobium roseum DSM 5159]
 gi|221155589|gb|ACM04716.1| putative sensory box protein [Thermomicrobium roseum DSM 5159]
          Length = 1056

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 108/578 (18%), Positives = 221/578 (38%), Gaps = 53/578 (9%)

Query: 382 IGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATI--LG 439
           +   +   +       + +     R  + +     +VW  D  RD V T+ + A +  LG
Sbjct: 456 LSAELRDEIDERRTIERLLAEREARLQVLLRQLPAVVWTVD--RDLVFTSSEGAGLAHLG 513

Query: 440 LASGSMHG-PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
           L  G + G  +  +L     +            +       ++ +             +R
Sbjct: 514 LRPGQVVGQTLFEYLGTSDPD--HLVIRAHRLALAGEPQEYEFSW-------HDRCFRVR 564

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLS 558
           + P+ + +G I   IGIA D T++ ++ E +   A  D LTGI NR S L  L  +    
Sbjct: 565 LEPLRDPDGRITGVIGIAFDSTDEVRTREQLERLATTDELTGIANRASLLAHLDHV---- 620

Query: 559 ATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFG 618
                     ++ID+D +K +ND  G  VGD +L  + +R+   ++  D++ RL G+ F 
Sbjct: 621 -ARAGEPFAALLIDLDGFKAVNDTFGHLVGDALLREVAQRLRRSVRQDDLVGRLGGDEF- 678

Query: 619 IILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAE 678
           ++L    ++    + A  +  ++  P  +  + I +  S+G A        ++E+L+ A+
Sbjct: 679 LVLARVQDTEGARELANRILVALTHPFRIDGQTIHLGGSVGIAFCDGRPCDTTEILRAAD 738

Query: 679 LAMYHAKHRGGNHVESFRVS--SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV 736
           LA+Y AK RG   V  F        +  V++ E L  A E   +      +I L    + 
Sbjct: 739 LALYEAKRRGKGRVVLFSPELAEETTQLVILSEALRTACETGSIRFAAQAVIHLRTGRVA 798

Query: 737 GLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFI 796
           G+E + +W  P+ G     E   +AE   + + + L  ++        W  +     + +
Sbjct: 799 GVELVPEWSDPQHGTYRGEELAALAERTGVAELLALRGIQECL----DWLREMPKRSLVV 854

Query: 797 LINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGI 856
            +    + LL +E+ + ++  + +      R+ L    + ++  P   R  L  +   G+
Sbjct: 855 -LRFPQRALLADEVVKILREPLDELARDQKRLWLDLP-TSLLRMPRD-RQALQAVSSEGV 911

Query: 857 SLTLDDFGTKCSLLSY-----------LGYIPFDTVKFNGSLMTG--STEKRIAILRSII 903
            +           L             +  +P   ++     +       +   +  +++
Sbjct: 912 GI-----------LVRDPVLTPEGIEPVLSLPRAGIRIPRGFVRSFFVDPRAAVLTHALL 960

Query: 904 PMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
            + +++    +A D+        L R GC Y       
Sbjct: 961 RVTEDLSLLSLADDVDEFAVFVALARSGCTYGVGPLFG 998


>gi|330806878|ref|YP_004351340.1| diguanylate cyclase/phosphodiesterase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374986|gb|AEA66336.1| Putative diguanylate cyclase/phosphodiesterase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 648

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 172/433 (39%), Gaps = 22/433 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ +  E +   ++QDNLTG+ NR+ F  +L   +       +    ++++ +     +N
Sbjct: 224 EQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQASSGY--LLLLRVKDLAGLN 281

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
             LG    D +L ++  ++           +++ R+ G  F ++        +    A  
Sbjct: 282 QRLGGQRTDQLLQAVGEQLLRECARYPETHNLVTRIRGGEFAVLAPGLV-REEALQLAQN 340

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++A        ++   ASIG A +     +   +L+  + A+  A+ +G        
Sbjct: 341 LEAALASLHATGATDVASVASIGLAPFV-HGDSPQAVLQLGDQALAQAESQGEPGWACLD 399

Query: 697 VSSFR---SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQWDHPKWGNI 752
            S+      D       L  A+ +    L + P++   D ++V   + L +        I
Sbjct: 400 HSAVASVGDDHHAWHTLLDQALNHQRFELYFQPVVAAQDTQVVLHYKVLSRLLDEHGQTI 459

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+   E       ++  MLE++ R +             + +N++S  L D +   
Sbjct: 460 PAGRFLPWLERFGWTARLDRLMLEQVLRQMAGHEQS-------LALNLSSATLADPQALN 512

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  ++       SR+ L   E  +         L  RLR++G SL+L  FG + S++  
Sbjct: 513 KIFEILRAHSNLGSRLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGN 571

Query: 873 LGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +    +K +GS +    +   +   + +I   A +I+  +IA+ +  E ++  +  M
Sbjct: 572 LSRLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELAVIREM 631

Query: 931 GCDYIQDSHVASP 943
           G   +Q   V  P
Sbjct: 632 GLFGVQGQLVGEP 644


>gi|89094728|ref|ZP_01167663.1| hypothetical protein MED92_17269 [Oceanospirillum sp. MED92]
 gi|89080982|gb|EAR60219.1| hypothetical protein MED92_17269 [Oceanospirillum sp. MED92]
          Length = 711

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 103/590 (17%), Positives = 219/590 (37%), Gaps = 30/590 (5%)

Query: 367 IQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRD 426
           + P     LVLI I      + +          +  + +R    +  S + +        
Sbjct: 128 VVPLDEKELVLISIRRELDHLDYRRRLRKAEASLAEETKRSQQLMDSSRNAIGCCH-DGK 186

Query: 427 RVTTTPDIATILGLA--SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                     + G+     ++   +  +  Y    DR  F   L          L  +  
Sbjct: 187 LSYVNESFCELFGIENKDKALGKNLAEFFTY---EDRHEFIEQLQLIERQESNDLLVQLT 243

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
            + +D       + + P+   +   L    I   + E   S          D ++G+ N+
Sbjct: 244 AQRSDRSEFAANLELAPIEIKD--ALGVRAIFR-VDEHNVSHLLSEDL---DFVSGLFNK 297

Query: 545 QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                +L   +   A       +++ I++D+  +I    G    D ++  ++  + + + 
Sbjct: 298 DHLQKQLEQ-ITQKALRGGHDCSLIYIELDQLDQIKAKFGHEGSDQLIRDVSALLQKKVN 356

Query: 605 FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM-PINLLEREITVTASIGFASW 663
              +L   + N F I+     N      F+  + K IA    +    E+  T SIG A  
Sbjct: 357 KAHLLTHPTENAFVIVFKD-PNIQTAQSFSENLCKVIAKNRSSAAGVEVQSTCSIGIAVI 415

Query: 664 TSSKITSSEMLKNAELA---MYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSEL 720
             +    +E+L+ A  A   +     +G   +     S          E +  ++EN+E 
Sbjct: 416 NDNTPPPTELLQRATTAIANLREESPQGDGVLLHIPESLSNECEDDEFECIRNSIENNEF 475

Query: 721 YLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERI 778
            L++ PI+     D+     EAL++  + + G +S +EFM    +      ++ +++E+ 
Sbjct: 476 KLLFQPIVNLTAEDQTAHHYEALLRLKNDEQGELSPNEFMSAIGDSETAIKVDRWVIEQG 535

Query: 779 ARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVM 838
            + +    +Q +   +F  IN+++  L D +L   +  ++ K      R+    SES + 
Sbjct: 536 LKHLKRSLNQEHKNVLF--INVSAHALGDKKLLTWLSGVLRKNNIPADRLVFQISESDIS 593

Query: 839 GNPERSRLLLGRLRKIGISLTLDDFGT--KCSLLSYLGYIPFDTVKFNGSLMTGSTEK-- 894
            +P ++++   +L KI   + +  FG+      +  L  I  D VK +GS ++   +   
Sbjct: 594 ISPRQAQIFAEKLNKIHCRVCVKHFGSVPNYDNM--LTSIHSDFVKLDGSFISDLGKDPE 651

Query: 895 -RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                +     + K++    IA  +     +  L + G DY+Q  ++  P
Sbjct: 652 QDEQFMSMAAQL-KSLNKVTIAPMVEQTKTMAHLWKAGIDYVQGYYLQPP 700


>gi|119898170|ref|YP_933383.1| putative signaling protein [Azoarcus sp. BH72]
 gi|119670583|emb|CAL94496.1| conserved hypothetical signaling protein [Azoarcus sp. BH72]
          Length = 690

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 98/435 (22%), Positives = 184/435 (42%), Gaps = 19/435 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
           ++ E +   A  D LTG+PNR++F   L   +  S    +    +  ID+D++K +ND  
Sbjct: 263 EATELLAHQALHDPLTGLPNRRAFEQALEDAVTASRRAGD-SGVLCFIDLDRFKIVNDTC 321

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G A GD++L  + R I + ++  D++ R+ G+ F +IL            A  +R+++A 
Sbjct: 322 GHAAGDELLRRIARLIRQRVRAEDLICRIGGDEFALILHGCG-PEDAHRIAENIREAVAA 380

Query: 644 -PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSF-- 700
                  R  +V ASIG      S  T+S++L  A+LA Y AK  G N V          
Sbjct: 381 FRFTWEGRRFSVGASIGLVRIDGSLATASDVLVAADLACYAAKKSGRNRVVEHDDGPVGG 440

Query: 701 --RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGL-EALIQWDHPKWGNISSSEF 757
              S    ++     A+   +L L    ++ + D       E L++   P     S+S+ 
Sbjct: 441 AGDSGDAAVQAVQPAAIPYDQLLLYTQAVVPVGDAATESWSEILLRVVGPTGEVGSASDL 500

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKD-LLDNELCEGMQA 816
           +   E    +  ++ ++  ++   +   R  A  P   + +N++    L        ++ 
Sbjct: 501 LARLEPGRHLIELDEWVAAQVCAVLA--RGAAGAPLQRVSLNLSRSAVLASGRYVAHLET 558

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD--DFGTKCSLLSYLG 874
            + +    P  + L F  S+V   PE SR L    R++G  + L+  D G     ++ L 
Sbjct: 559 QLKRHTLDPDLVVLEFPASMVEQAPEESRHLAREARRVGCRIALERMDGGA----VALLK 614

Query: 875 YIPFDTVKFN-GSLMTGST-EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
            +  D VK +   L+     E    + +++  MA  +    +A ++  ++    L   G 
Sbjct: 615 TLHPDYVKISLKQLVETYGLEAGCNLAQALCGMAAALSIRSVASEVEDDLLRDSLRDFGF 674

Query: 933 DYIQDSHVASPLGFN 947
           D+ Q + +A+     
Sbjct: 675 DFAQGALIAATTPLE 689


>gi|120554724|ref|YP_959075.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
 gi|120324573|gb|ABM18888.1| diguanylate cyclase with PAS/PAC sensor [Marinobacter aquaeolei
           VT8]
          Length = 574

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 9/313 (2%)

Query: 390 VLATGYFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMH 446
             A     Q +        LA   +  S + +   D         P    + G  +  + 
Sbjct: 262 REALEQRDQALAKSRRTLQLAERVIESSFEGIMVTDKDVCIEFVNPAFTQMTGYTAEEVI 321

Query: 447 GPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           G   + L    H  D + +R + +S   +  G  + E   R    + +  ++ I  +++ 
Sbjct: 322 GRSPDLLSSGRH--DSEFYRRMWNSLETH--GYWRGEIWNRRKTGELYLELLTITAITDD 377

Query: 506 NGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLR 565
           +G+   Y G+  DIT+ +K+ E I   A+ D LTG+PNR+   DRL   +  +   + + 
Sbjct: 378 DGNTTHYAGLFTDITQNRKNEEQIRQLAYYDALTGVPNRRLLEDRLDHAIRHAHRKE-ML 436

Query: 566 PTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISEN 625
             VM +D+D++K++ND LG AVGDD+L+  T R+ + L+  D LARL G+ F ++L    
Sbjct: 437 LAVMFMDLDRFKEVNDTLGHAVGDDLLLQFTARVKDCLREDDTLARLGGDEFIVLLPEME 496

Query: 626 NSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
               +   A  + +    P  +    I V +SIG + +     T  E++  A++AMY AK
Sbjct: 497 QLSDVFAVADRLIEVNKRPYQINGNHINVGSSIGISLYPEDGTTVQELINGADIAMYRAK 556

Query: 686 HRGGNHVESFRVS 698
             G N  + F  +
Sbjct: 557 RDGRNRYKLFAPN 569


>gi|257094134|ref|YP_003167775.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046658|gb|ACV35846.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 439

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/344 (23%), Positives = 144/344 (41%), Gaps = 6/344 (1%)

Query: 355 WMAITKRLDNDIIQPALVGGLV--LIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
            + +T R D+ + + AL  G    L+        +   +      Q + S       A+ 
Sbjct: 90  IIVLTGRDDHQLAEAALRAGAQDYLVKGQFEHDALGRAIRHALVRQRLESRLRLFEAALN 149

Query: 413 GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            + + +   D+        P    + G       G     +      D   ++ +  + +
Sbjct: 150 SAANGIVITDVNAAIEWANPAFTAMTGRTLAEAVGRTPGEVLKSGRQDAAFYQRMWATIL 209

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             +      E   R  D   +   + I P+++ NG I  ++ I  DI+E+K + E +   
Sbjct: 210 AGQ--VWSGELVNRRKDGSVYDEALTISPVTDMNGRIQHFVAIKQDISERKVTEERVQHL 267

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
           A  D LT +PNR    DRL   +  +  D      +M +D+D++K +ND LG  VGD +L
Sbjct: 268 AHHDQLTDLPNRALLSDRLAQAVAQARRDRGT-LALMFLDLDQFKPVNDTLGHDVGDLLL 326

Query: 593 VSLTRRIGELLK-FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLERE 651
             +  R+   +    D ++RL G+ F I+L   + +      A  +  ++  P  +   E
Sbjct: 327 KEVALRLQSCVPRESDTVSRLGGDEFVILLAQMDKAADAVVVAGKILAALQRPFAIGPHE 386

Query: 652 ITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
           I ++AS+G A +       + +LKNA+ AMYHAK  G N    F
Sbjct: 387 IGISASLGIAVYPQHGEDVNRLLKNADTAMYHAKKAGRNCYRFF 430


>gi|190573983|ref|YP_001971828.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011905|emb|CAQ45526.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 689

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 91/565 (16%), Positives = 200/565 (35%), Gaps = 16/565 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHG 447
                    +    + ER+  A++ S      +      +        + G      + G
Sbjct: 128 QARRGLRRIEAQMRETERRCDALIASSRDPIAYVHEGMHIRANDAYLEMFGYEQFDDIEG 187

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              + L  +     + F+ +L           QY+   R  D       +     +   G
Sbjct: 188 --ISLLDMVAAQHVEGFKQLLKGLSRGEAPPPQYQLDARHEDGSTFAATMEFTA-ATYEG 244

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +    + +   +    +    +     +D +TG+ NR +F+ +L + +  +   +  +  
Sbjct: 245 ESCLQVVLRRRMEFDPELAREVEDLRQRDQVTGLLNRPTFMLQLESAVAQAGRSEG-QFG 303

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +++I+ D Y ++   +G+A  D ++ +L   + E++     LAR   + F ++       
Sbjct: 304 LLLIEPDHYARLLPDIGLASADALIGALAGLLAEVVGEDAQLARFGEHNFAVLQAGP--Y 361

Query: 628 LKIADFAIAMRKS-IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            +    A  +R++  A   ++  R  TVT SIG         +  ++L  A    + A  
Sbjct: 362 AQTVALAERIREAYAAHVFSIGARSATVTVSIGGVQVGEKIASIGQVLARASECTHAAAE 421

Query: 687 RGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G                   +     +  A+      L Y P++ L  E +   EA ++
Sbjct: 422 LGNTCRIFDPAAADRVEEERVLRWVTRIREALAGDGFQLHYQPVLNLQGEPLELYEAYLR 481

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            +H     +S + F+ IAEE  ++  IN +++ +    +     Q +   + + +    +
Sbjct: 482 LEH-NGELLSPTAFLGIAEEYGLLAEINRWVVSQAIAVLGQRARQGHATQVLVKV--TPE 538

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D E+   ++  +        R+ L   E+ V  +   ++  L  +  +G  + L+ F
Sbjct: 539 SFDDPEMIATLRRELQAQGVPGERLWLHAPEAKVFTHLRSAQQFLAEVAPLGCRIGLEQF 598

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGE 921
           G+       L +     +K +    +     R  I  +  I   A+      IA+ +   
Sbjct: 599 GSGLDSFQLLAHFQPQFLKLDRGFTSDLAATRENIDRISQITARAQEAGIRTIAEFVSDA 658

Query: 922 IDIKELTRMGCDYIQDSHVASPLGF 946
             +  L   G DY+Q   V   L  
Sbjct: 659 NSMTLLFSAGVDYVQGDFVGPALPE 683


>gi|197250980|ref|YP_002145321.1| cyclic diguanylate phosphodiesterase (EAL) domain-containing
           protein [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197214683|gb|ACH52080.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 516

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I+  
Sbjct: 238 FYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFITPD 297

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   + ++
Sbjct: 298 IFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQDIE 354

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSYL  
Sbjct: 355 AL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSYLQQ 412

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   G  
Sbjct: 413 LPVDSLKIDRTFIDTIDTSSNDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSHGVG 472

Query: 934 YIQDSHVASPLGFNSILKLL----KERFPLVK 961
           ++Q    A P+G N  +  L    + +  L+K
Sbjct: 473 FVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|161615485|ref|YP_001589450.1| hypothetical protein SPAB_03256 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364849|gb|ABX68617.1| hypothetical protein SPAB_03256 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 384

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 103 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 162

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 163 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 219

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 220 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 277

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 278 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 337

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 338 GVGFVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 372


>gi|325276412|ref|ZP_08142184.1| diguanylate phosphodiesterase [Pseudomonas sp. TJI-51]
 gi|324098441|gb|EGB96515.1| diguanylate phosphodiesterase [Pseudomonas sp. TJI-51]
          Length = 528

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 8/269 (2%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                     + +L  A+E  E    + P++R  D    G+E L++W+HP+ G +    F
Sbjct: 252 HWQVRRANSPRAELRRALEADEFLPYFQPVVRKGDYRWAGVEVLMRWNHPQEGLVRPDLF 311

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE    I A+   ++   A+ +  +          + INI +    D  L E  +  
Sbjct: 312 IPYAEHSGQIVAMTRALMMHTAQALAPY-ATLLEDGFHVGINITADHCRDLTLLEDCRTF 370

Query: 818 ISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           +      P R  + L  +E  ++     +  L  +L  +G+ + LDDFGT  S L+YL  
Sbjct: 371 LQHF--PPGRVVLTLELTERKLIEPTPVALELFEKLDAMGVKIALDDFGTGQSSLNYLLQ 428

Query: 876 IPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
              D +K +   +         + IL +II ++  +   I+A+ +  E     L   G D
Sbjct: 429 FKVDYLKIDQRFVAMIGADALSVHILETIIELSAKLGLGIVAEGVETETQRDYLASHGVD 488

Query: 934 YIQDSHVASPLGFNSILKLLKERFPLVKN 962
           Y Q    A P+     L+ L  R P    
Sbjct: 489 YQQGYLFARPMPAQQFLEALATR-PGASR 516


>gi|239627138|ref|ZP_04670169.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517284|gb|EEQ57150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 745

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 140/337 (41%), Gaps = 5/337 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F +   +       + +    E   + +  S DI+++W+++ D ++ +P+     G A  
Sbjct: 129 FCIFLDLTEVRDAQEKLRLSLEHLEIIMNQSSDIIFEWNLIEDAISFSPNWLGKFGYAPS 188

Query: 444 -SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                     L + + +D      +++         L  + R+R    Q+ W  +R    
Sbjct: 189 YDSRLQKEEILRHFYPDDIGPMAALMEDVKRGVSNSL-LDVRIRNTKGQYIWCRLRAATQ 247

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +++G  LR +G  +DI E+K+ +E +   A  D LTG+ N      R    L       
Sbjct: 248 YDADGRPLRAVGTISDIDEEKRMVEELRRRAELDALTGLYNHAEMEHRAEQYLS---GRP 304

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                + +ID+D +K +ND  G   GD VL  L   + +L +  D++ R+ G+ F + L 
Sbjct: 305 ETVCAMFIIDVDNFKLVNDRQGHLFGDAVLAELAAGMKKLTRKSDVIGRIGGDEFAMFLK 364

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              ++      A  +           ++ + VT SIG A +         +   A+LA+Y
Sbjct: 365 DIPSTQIAEQKAGKLLAMFQQLFQGEKQPVEVTCSIGLAIYPWDGTDYQTLYHCADLALY 424

Query: 683 HAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
            AK +G N    + V+S  +   +    L  A+++ +
Sbjct: 425 QAKSQGKNQYARYDVNSLEAVDRIGYSSLGAAIDSDQ 461



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 430 TTPDIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAA 488
                 +I G     +    +N +L  IH  DR NF   +   +  +  +L   +RV   
Sbjct: 48  VNDGFLSIFGFTREELERLFQNQFLTMIHPLDRQNFLGEVGRQL-NKGNQLSLSYRVLCK 106

Query: 489 DNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQ 535
           D  + W     +   +   +  R+  I  D+TE + + E +  +   
Sbjct: 107 DGSYKWTASSAQLFGDEQEE--RFFCIFLDLTEVRDAQEKLRLSLEH 151


>gi|86148177|ref|ZP_01066475.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85834024|gb|EAQ52184.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 826

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 164/425 (38%), Gaps = 34/425 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+PNR    ++L+ +   S         ++ + +  + +IN+  G  VGD +L  L
Sbjct: 417 DRRTGLPNRSVLREKLSKMSTDSH--------LLALKVTTFGQINEKYGYRVGDKLLHDL 468

Query: 596 TRRIGELLK----FPDILARLSGNRFGIILISENNSLKIAD----FAIAMRKSIAMPINL 647
           +    + L         L  +    + ++  S      I      FA         P  L
Sbjct: 469 SEYFQKALWQFFDEGCQLYSIGIGEWAVVFDSWVGQEHIHQRFSEFADQTEHVNFEPTGL 528

Query: 648 LEREITVTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFR 701
            + +  ++ SI     +       +  ++L  A  A   A  +  +        ++   R
Sbjct: 529 PDID-YLSVSICAGIASRRDFPTTSIDDLLLKAIDARRSAVSQNKHLVSAKTLIQLEKHR 587

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++     +  AV N  +     PI+     ++   E L++ +      I+  +F+ I 
Sbjct: 588 QEQLGWLSCVSRAVLNQNIVACSQPIVSAHSHQVESYECLVRIE-EDGQLIAPGKFLPII 646

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +   ++  M+ R    +    D          IN+A +D  + +    ++  I K 
Sbjct: 647 EGTHLYTRLSRQMITRTFDFMSQRTDSF-------SINLAPQDFSNEKTILHLEQAIKKI 699

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L   E+  + +  R   +    R +G+++ +DDFG+  S +  +  +    +
Sbjct: 700 S-HPQRIGLEVLETEQIQDYGRLIEVCNHFRDLGVNIIVDDFGSGYSNIDEILKLEPQVI 758

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +GSL+    + +    I + ++ + + +    +A+ ++ E   +    MG DY+Q  +
Sbjct: 759 KLDGSLIRNIDKDKKQRKIAQQLVSLCQILNAKTVAEFVHNEQVCRIAEDMGIDYLQGYY 818

Query: 940 VASPL 944
              P 
Sbjct: 819 FGQPQ 823


>gi|300717031|ref|YP_003741834.1| cyclic diguanylate phosphodiesterase [Erwinia billingiae Eb661]
 gi|299062867|emb|CAX59987.1| Putative cyclic diguanylate phosphodiesterase [Erwinia billingiae
           Eb661]
          Length = 520

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 10/265 (3%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           + V    ++R+ +   +   +   E  +   P+I     +  G+E L++W +P+ G I  
Sbjct: 257 YIVWLATANRMSLSWQISYGITAREFMVYCQPLINSKTGDCDGIELLLRWHNPRQGWIPP 316

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I  +  F+L  I R +       N P   I IN+A+    + E+ + +
Sbjct: 317 DVFIPMAERQNLIAPLTRFVLREIVRHL---PQMPNCPTFHIAINVAASHFHNREIIDDL 373

Query: 815 QALIS-KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           Q+L          ++ +  +E   +   ++   ++  L KIG+ L +DDFGT  S LSYL
Sbjct: 374 QSLWWPANPVP--QLVVELTERDSLPEMDQ--RVVSHLHKIGVKLAIDDFGTGHSSLSYL 429

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +               +   +I +A+ +  +++A+ +      + L   G
Sbjct: 430 KTLSPDVLKIDKVFTAAIGTDAINATVTDMVISLAQRLNISLVAEGVETAEQAEYLREKG 489

Query: 932 CDYIQDSHVASPLGFNSILKLLKER 956
            D +Q    A P+      + L + 
Sbjct: 490 VDVLQGYFYARPMPLGDFPEWLSQH 514


>gi|15608497|ref|NP_215873.1| hypothetical protein Rv1357c [Mycobacterium tuberculosis H37Rv]
 gi|15840812|ref|NP_335849.1| hypothetical protein MT1400 [Mycobacterium tuberculosis CDC1551]
 gi|31792553|ref|NP_855046.1| hypothetical protein Mb1392c [Mycobacterium bovis AF2122/97]
 gi|148661146|ref|YP_001282669.1| hypothetical protein MRA_1365 [Mycobacterium tuberculosis H37Ra]
 gi|148822578|ref|YP_001287332.1| hypothetical protein TBFG_11387 [Mycobacterium tuberculosis F11]
 gi|167969106|ref|ZP_02551383.1| hypothetical protein MtubH3_14178 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403204|ref|ZP_03415385.1| hypothetical protein Mtub0_05801 [Mycobacterium tuberculosis
           02_1987]
 gi|215411001|ref|ZP_03419809.1| hypothetical protein Mtub9_06638 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426684|ref|ZP_03424603.1| hypothetical protein MtubT9_09943 [Mycobacterium tuberculosis T92]
 gi|215430242|ref|ZP_03428161.1| hypothetical protein MtubE_06109 [Mycobacterium tuberculosis
           EAS054]
 gi|215445538|ref|ZP_03432290.1| hypothetical protein MtubT_06192 [Mycobacterium tuberculosis T85]
 gi|218753066|ref|ZP_03531862.1| hypothetical protein MtubG1_06314 [Mycobacterium tuberculosis GM
           1503]
 gi|253799595|ref|YP_003032596.1| hypothetical protein TBMG_02621 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231607|ref|ZP_04924934.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364249|ref|ZP_04980295.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550369|ref|ZP_05140816.1| hypothetical protein Mtube_07900 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260186295|ref|ZP_05763769.1| hypothetical protein MtubCP_09737 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200412|ref|ZP_05767903.1| hypothetical protein MtubT4_09858 [Mycobacterium tuberculosis T46]
 gi|260204617|ref|ZP_05772108.1| hypothetical protein MtubK8_09971 [Mycobacterium tuberculosis K85]
 gi|289442800|ref|ZP_06432544.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289446952|ref|ZP_06436696.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554851|ref|ZP_06444061.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289574023|ref|ZP_06454250.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745109|ref|ZP_06504487.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749913|ref|ZP_06509291.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289753439|ref|ZP_06512817.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757462|ref|ZP_06516840.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761518|ref|ZP_06520896.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994914|ref|ZP_06800605.1| hypothetical protein Mtub2_10495 [Mycobacterium tuberculosis 210]
 gi|297633909|ref|ZP_06951689.1| hypothetical protein MtubK4_07295 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730897|ref|ZP_06960015.1| hypothetical protein MtubKR_07390 [Mycobacterium tuberculosis KZN
           R506]
 gi|298524864|ref|ZP_07012273.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313658230|ref|ZP_07815110.1| hypothetical protein MtubKV_07410 [Mycobacterium tuberculosis KZN
           V2475]
 gi|54040150|sp|P64830|Y1392_MYCBO RecName: Full=Uncharacterized protein Mb1392c
 gi|54042521|sp|P64829|Y1357_MYCTU RecName: Full=Uncharacterized protein Rv1357c/MT1400
 gi|1419060|emb|CAA99962.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13881008|gb|AAK45663.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31618142|emb|CAD94253.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|124600666|gb|EAY59676.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134149763|gb|EBA41808.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505298|gb|ABQ73107.1| hypothetical protein MRA_1365 [Mycobacterium tuberculosis H37Ra]
 gi|148721105|gb|ABR05730.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253321098|gb|ACT25701.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289415719|gb|EFD12959.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289419910|gb|EFD17111.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289439483|gb|EFD21976.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289538454|gb|EFD43032.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289685637|gb|EFD53125.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690500|gb|EFD57929.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289694026|gb|EFD61455.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709024|gb|EFD73040.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713026|gb|EFD77038.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494658|gb|EFI29952.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|323720174|gb|EGB29277.1| hypothetical protein TMMG_02058 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902979|gb|EGE49912.1| hypothetical protein TBPG_00837 [Mycobacterium tuberculosis W-148]
 gi|328459341|gb|AEB04764.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 307

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
              A   +  I   EM + A  A   A     +           + R  +   + +A++ 
Sbjct: 11  FACALRPTKLIDYEEMFRGAMQA--RAMVANPDQWAD-SDRDQVNTRHYLSTSMRVALDR 67

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E +LVY PIIRL D  I+G EAL++W+HP  G +    F+  AE   ++  +  F+LE+
Sbjct: 68  GEFFLVYQPIIRLADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPLTAFVLEQ 127

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R + SWRD +  P  F+ +N+++  + D      ++ ++ +T      ++L  +E   
Sbjct: 128 ACRHVRSWRDHSTDPQPFVSVNVSASTICDPGFLVLVEGVLGETGLPAHALQLELAEDAR 187

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--- 894
           +   E++   L  L  +G+ + +DDFG   S L+YL  +P D VK  G  +         
Sbjct: 188 LSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIECLDGDIQA 247

Query: 895 ---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 I R++I +   +  T+ AK +        L   GC   Q  H A  L  +
Sbjct: 248 RLANEQITRAMIDLGDKLGITVTAKLVETPSQAARLRAFGCKAAQGWHFAKALPVD 303


>gi|168240148|ref|ZP_02665080.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194448601|ref|YP_002044372.1| cyclic diguanylate phosphodiesterase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406905|gb|ACF67124.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205339967|gb|EDZ26731.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 516

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 132/275 (48%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  + D    G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVEDGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVSDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGANDFMSWLGKSAQRQNGLLK 504


>gi|261341469|ref|ZP_05969327.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316263|gb|EFC55201.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Enterobacter cancerogenus ATCC 35316]
          Length = 521

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 7/253 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+   +L + Y PII + + + VG EAL++W       +S +EF+ +AE+  MI+
Sbjct: 273 RLLHRALNKRQLCVHYQPIIDIKNNQCVGAEALLRWPGFNGQVMSPAEFIPLAEKEGMIE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  +++E +  D+  +    N P ++I IN+++ D   + L   +            +I
Sbjct: 333 RITDYVVEEVFSDLGHYLA--NHPQLYISINLSASDFHSSRLIAMISDKARYFAVRAQQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 391 KIEVTERGFI-DVPKTTPVIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDILKIDKSFI 449

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                   +  I   II MA+++    IA+ +     +  L + G  Y Q  H A  +  
Sbjct: 450 DTLATNSTSHLIAEHIIEMAQSLRLKTIAEGVETAEQVSWLLKRGVQYCQGWHFAKAMPP 509

Query: 947 NSILKLLKERFPL 959
              +    ++ PL
Sbjct: 510 QEFISW--QQQPL 520


>gi|152968842|ref|YP_001333951.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953691|gb|ABR75721.1| putative Diguanylate cyclase/phosphodiesterase domain 1 [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 503

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 119/262 (45%), Gaps = 7/262 (2%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
              +   R+ +  ++   ++N++  + Y P+  +      G+EAL++W  P    I+   
Sbjct: 230 YRHWSKMRMSMAREIIRGMKNAQFTVHYQPVFNVNRGNCGGVEALMRWPLPDGRFITPDI 289

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE   MI  ++  + + IA D+  W+        +I +NI+ + L+     E ++ 
Sbjct: 290 FITAAENEGMIVPLSRHLFKLIAEDVERWQVAEG---FYISVNISPEHLVHESFIEDVE- 345

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
            + +      R+ L  +E  ++  P      L RLR+ GI + +DDFGT    LSYL  +
Sbjct: 346 -LLQARLGNLRLMLELTERSLIVQPALVSDKLIRLREKGILIAIDDFGTGYCSLSYLQQL 404

Query: 877 PFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
           P D +K + + +         + IL +II +++ +   I+A+ +  E  +  +      +
Sbjct: 405 PVDYLKIDRTFVDTIDTSGSDVPILDTIIMLSRKLGLNIVAEGVSSEHQLSYILDHNVGF 464

Query: 935 IQDSHVASPLGFNSILKLLKER 956
           IQ    A P+  +   + L  R
Sbjct: 465 IQGYLYAKPMCSSDFTRWLDTR 486


>gi|86148176|ref|ZP_01066474.1| GGDEF family protein [Vibrio sp. MED222]
 gi|85834023|gb|EAQ52183.1| GGDEF family protein [Vibrio sp. MED222]
          Length = 832

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 171/440 (38%), Gaps = 36/440 (8%)

Query: 524 KSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 L  +++ D+ TG+PNR    +RL TIL            ++ + +  + ++N+ 
Sbjct: 405 HQQARRLTESYRIDSRTGLPNRIVLKERLNTILFNEH--------LLTLKLTNFHQVNEK 456

Query: 583 LGIAVGDDVLVSLTR----RIGELLKFPDIL----ARLSGNRFGIILISENN----SLKI 630
            G  VGD +L+ L+     R+   +     +      +    + II  +  +      + 
Sbjct: 457 YGYQVGDQLLLDLSNHFVNRLHLSVATESKVKVELFSIGVGEWAIIFNASVDSVKIEQRF 516

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRG 688
            +FA  +      P  L + +    +  G  +        +  E+L  A  A  +     
Sbjct: 517 VEFADGIEHINFEPYGLTDIDYLSVSLCGGFASRCDFLADSGDEILLKAIEARRYGVRNN 576

Query: 689 GNH---VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            +             R +++     +  A+ +  +     PI+     E++G E L++  
Sbjct: 577 THITNAKNIQVSEEDRKEQLGWLSCVSRAILDQNIITYSQPIVASGTHEMIGQECLVRIM 636

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 +   +F+ I  +  +   ++  M+      + + +           IN++ +DL
Sbjct: 637 ESDGTIVLPGKFLPIIADTHLYTRLSRHMIRNTIGYMANKQSSF-------SINLSPQDL 689

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           L ++  E +++ IS     P+R+ L   ES  + +  R   +    R +G  + +DDFG+
Sbjct: 690 LSDKTLEVLESAISGMN-DPTRLGLEVLESEQIKDYGRMIEVCDHFRALGARIIVDDFGS 748

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S +  +  +    +K +GSL+       K+  I   ++ + +      +A+ ++ +  
Sbjct: 749 GYSNIDEIIKLEPQIIKLDGSLIRNIDKDPKQRNIASQLVRLCQVFNAKTVAEFVHNQQV 808

Query: 924 IKELTRMGCDYIQDSHVASP 943
            +   +MG DY+Q  +   P
Sbjct: 809 CEIAEQMGVDYLQGYYFGEP 828


>gi|148978765|ref|ZP_01815145.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
 gi|145962186|gb|EDK27470.1| GGDEF family protein [Vibrionales bacterium SWAT-3]
          Length = 826

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 168/424 (39%), Gaps = 34/424 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+PNR    ++L+ +   S         ++ + +  + +IN+  G  VGD +L  L
Sbjct: 417 DRRTGLPNRSVLREKLSKMTIDSH--------LLALKVTTFGQINEKYGYRVGDKLLHDL 468

Query: 596 TRRIGELLKF----PDILARLSGNRFGIILISENNSLKIAD----FAIAMRKSIAMPINL 647
           +    + L         L  +    + ++  S  +   I      F+         P  L
Sbjct: 469 SDYFQKALWQFFDKGCQLYSIGIGEWAVVFDSWASQEHIHQRFSEFSDQTEHVNFEPSGL 528

Query: 648 LEREITVTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFR 701
            + +  ++ SI     +       +  ++L  A  A   A  +  +        ++   R
Sbjct: 529 PDID-YLSVSICAGIASRRDFPTTSIDDLLLKAIDARRSAVSQNKHLVSAKTLIQLEKHR 587

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++     +  AV N  +     PI+   D ++   E L++ +  +   I+  +F+ I 
Sbjct: 588 QEQLGWLSCVSRAVLNQNIVACAQPIVSAHDHQVESYECLVRIE-EEGQLIAPGKFLPII 646

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +   ++  M+ R    +    D          IN+A +D  + +    ++  I K 
Sbjct: 647 EGTHLYTRLSRQMITRTFDFMSQRTDSF-------SINLAPQDFNNEKTILHLEQAIKKI 699

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L   E+  + +  R   +    R +G+++ +DDFG+  S +  +  +    +
Sbjct: 700 S-PPQRIGLEVLETEQIQDYGRLIEVCNHFRDLGVNIIVDDFGSGYSNIDEILKLEPQVI 758

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           KF+GSL+    + R    I + ++ + + +    +A+ ++ E   +    MG DY+Q  +
Sbjct: 759 KFDGSLIRNIDQDRKQRKIAQQLVSLCQILNAKTVAEFVHNEQICRIAEDMGVDYLQGYY 818

Query: 940 VASP 943
              P
Sbjct: 819 FGEP 822


>gi|325294724|ref|YP_004281238.1| diguanylate cyclase/phosphodiesterase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065172|gb|ADY73179.1| diguanylate cyclase/phosphodiesterase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 407

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 166/420 (39%), Gaps = 29/420 (6%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D +TG+ +R++F D L        ++DN    +++ DID +K +N   G  VGD +L + 
Sbjct: 3   DEITGLFSRKAFFDLLGK-----KSNDNREIIIVIFDIDDFKFVNLSYGYDVGDSILKAC 57

Query: 596 TRRIGELL---KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             RI E+         +AR   N F I L  +   ++I +          M        I
Sbjct: 58  GNRIKEVFQTYFSEIFIARTDSNEFSIALFDDIPLIRIKEIFYK--HINRMLFKKRNELI 115

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVM--IKED 710
            +T S G +          E+   AE +++ AK  G N +     S  R  + M  I++ 
Sbjct: 116 AITVSAGTSK----GKHPLEVFSKAENSLFLAKESGKNTIFIDEKSRIRDFQKMKDIRKK 171

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+ ++ +   + PI+ L   EI G E L +  +     +       IA+   +   I
Sbjct: 172 LIEAIRDNSVKPYFQPIVSLRTGEIFGYEVLARIFYKN-ELLKGDYVFSIADTFSLTPEI 230

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
           +  +  +  + +             +  NI+ K  +       +  +      +   I L
Sbjct: 231 DKQLFLKAIKYL--------NKEYKLFFNISMKYFVKE--LNNIFQIAKTYSINLENITL 280

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +ES  +   E ++ +    ++  + + +DDFG   S   YL   P D +K +G  +  
Sbjct: 281 EITESQKLIQEEVAKSIFRMFKEFHVGIAVDDFGAGYSNFVYLKKFPVDVLKVDGDFIKN 340

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
           +    K +AI++SI+ + +      +A+ I  E   + +  +G    Q   +  P     
Sbjct: 341 AKKDVKDLAIVKSIVDIGRIFRIRTLAEFIEDEETYRIMKDIGVSLGQGWFIGKPAPEPQ 400


>gi|291455728|ref|ZP_06595118.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Bifidobacterium breve DSM 20213]
 gi|291382656|gb|EFE90174.1| putative cyclic diguanylate phosphodiesterase domain protein
           [Bifidobacterium breve DSM 20213]
          Length = 752

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ED+  A+EN E      P        IVG EAL++W+HPK+G I    F+ + E    I 
Sbjct: 20  EDIDHALENGEFCCYLQPKCNAETGTIVGAEALVRWNHPKYGVIPPGWFVPVLERAGRIC 79

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +++F+   +A  +  W  +     + + +N++  D+   ++ + +  L+++       +
Sbjct: 80  HVDVFVWRFVAEMLGRWEHEGRNL-VPVSVNVSMMDINQMDVADVIGGLLNEYNIDARLL 138

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES V  N    +  + +L   GI + +DDFG+  S L+ L  I  D +K +   +
Sbjct: 139 QVEITESAVAKNLPVVKDTIRKLHARGIVVLMDDFGSAYSSLNMLKDINVDVIKLDTKFI 198

Query: 889 TGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             S E     + I++S+I MAK +   IIA+    +  +  L  +GC YIQ  +   PL 
Sbjct: 199 ELSDENAGKGMKIIQSMIVMAKKLHLMIIAEGAQTKEQVDWLKAIGCGYIQGYYFYPPLP 258

Query: 946 FNSILKLLKER 956
              +  LL ER
Sbjct: 259 VKRMETLLAER 269



 Score = 96.9 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 17/190 (8%)

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
            +D+LTG+ NR ++ D L  I        +   TV+ +D+    +IN+ LG A GD  L 
Sbjct: 437 RRDSLTGLLNRNAYDDDLEYI----QATHDQPLTVVYVDMIGLHEINNHLGHAKGDSALC 492

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            L   +       D + R+ G+ F I+  +   S  +   A   R  +    ++      
Sbjct: 493 ELADAMRACF-DDDRIYRVGGDEFVIVSCNHTVSQSMRRMARMRRDFLEGDWDI------ 545

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCL 713
              S+G A          +++  AE+ M   K +   +V        R     ++  L  
Sbjct: 546 ---SVGMAES-DDGGDLPDLINQAEIRMREDKKQ--YYVNGGGKRQLRMLNNRLENILVR 599

Query: 714 AVENSELYLV 723
             +   L   
Sbjct: 600 NDDMKMLLEY 609


>gi|187926071|ref|YP_001892416.1| PTS system, lactose/cellobiose family IIC subunit [Ralstonia
           pickettii 12J]
 gi|241665559|ref|YP_002983918.1| PTS system, lactose/cellobiose family IIC subunit [Ralstonia
           pickettii 12D]
 gi|187727825|gb|ACD28989.1| PTS system, lactose/cellobiose family IIC subunit [Ralstonia
           pickettii 12J]
 gi|240867586|gb|ACS65246.1| PTS system, lactose/cellobiose family IIC subunit [Ralstonia
           pickettii 12D]
          Length = 723

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 136/286 (47%), Gaps = 7/286 (2%)

Query: 670 SSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN-SELYLVYHPII 728
            + +L+ AE A    K R                 V +  DL  A++   +++L + P +
Sbjct: 431 LASLLQIAESAEVSLKGR----RCLDLPGDEGRMAVALASDLEDAIKREGQIFLEFQPQV 486

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
                 + G EAL++W HP  G ++S   + +A+++  I  + L +L    +   +WRD 
Sbjct: 487 DCSTGRVFGAEALLRWQHPVLGRVASPIVVALADDIGQIDQLGLRILSLACQQRAAWRDV 546

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
                  + +N++ + LLD  L   +  ++ +   SP++++L  +ES ++     +   L
Sbjct: 547 LPD-DFVVAVNLSPRQLLDCRLYRNVLDILHREGLSPTQLELEITESTMLLPDITAIGNL 605

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT-GSTEKRIAILRSIIPMAK 907
            +LR+ G+ + LDDFG   + L YL  +P DTVK + SL    +      I+RSI  +++
Sbjct: 606 KQLREAGVKVALDDFGMGHTSLHYLRELPLDTVKIDRSLADVSAGSVNEHIVRSIASLSR 665

Query: 908 NIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLL 953
            +  + + + +  E  ++ L+ +GC+  Q    + PL  +   + +
Sbjct: 666 TLNLSTVVEGVETEQQLERLSALGCERFQGYFFSRPLAPSVCQQFV 711


>gi|330860169|emb|CBX70490.1| hypothetical protein YEW_AT04090 [Yersinia enterocolitica W22703]
          Length = 431

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   ++  +G E L++W HP  G I  ++F+ +AE+  +I  +
Sbjct: 186 LKHALENNEFIPYLQPIVSGKEQCWIGCEVLMRWQHPGQGLIQPNQFIPMAEDSELIVPM 245

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 246 TRSIMQQVSAKFAPYVNQLP-EGFHFGFNISANHCRDLSLVDDCRNFIQAFGGNKINITL 304

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++     +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +  
Sbjct: 305 ELTERKLIVADATTDKLFAELHALGVFIAIDDFGTGHSSLTYLQKFKVDFLKIDQSFVGM 364

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  E  ++ L     DY+Q      P+  N 
Sbjct: 365 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENETQMRYLQAHNVDYLQGYMYGRPMPMNE 424

Query: 949 ILKLL 953
             + L
Sbjct: 425 FARYL 429


>gi|167746404|ref|ZP_02418531.1| hypothetical protein ANACAC_01113 [Anaerostipes caccae DSM 14662]
 gi|167654397|gb|EDR98526.1| hypothetical protein ANACAC_01113 [Anaerostipes caccae DSM 14662]
          Length = 1272

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 4/316 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F  + ++  +    + +    ER  + +  S D++++WD+ +D++  + +     G    
Sbjct: 644 FRTLINITQSKQAQEELRLTLERHRIIMEQSNDVIFEWDMKKDKMLYSSNWEKKFGYIPV 703

Query: 444 SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                 R     +IH  D +    +L    G      Q EFR+   D  + W  ++    
Sbjct: 704 MEEASERLLTQSHIHPEDLEVVEELLRDM-GGSMPYGQAEFRLADRDGCYRWYKVKATAQ 762

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G   + +GI  DI ++K++ + +   A +D LTG+ NR++    +   L+    D 
Sbjct: 763 FDRAGKPFKAVGIMADIDDEKRASQALEEKASRDELTGLYNRKTARKEIEYYLER--RDP 820

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +M+ID+D +K IND  G   GD VL  ++  +  +L+  D+++R+ G+ F I + 
Sbjct: 821 KEMAAMMLIDVDDFKLINDRYGHMFGDAVLQEISSVLTRVLRKEDVISRIGGDEFLIFMK 880

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +   A  +R+S              + SIG A          ++ ++++LA+Y
Sbjct: 881 DIRRVDILKSRAEKIRESFQSMFRQNMTSCEFSTSIGIACCPQDGTRFEDLFRHSDLALY 940

Query: 683 HAKHRGGNHVESFRVS 698
            AK RG N    +  S
Sbjct: 941 DAKSRGKNGYSLYEHS 956



 Score = 68.8 bits (167), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            +     +  +LG  +  +    R ++L  I+  DR+         +      ++ E+RV
Sbjct: 559 MLQINEGLENLLGYEAWEIKEKFRGHYLEVIYPPDREEVLAQTKKQLS-SGNVIELEYRV 617

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            A D Q  W++ +   ++ ++G          +IT+ K++ E + 
Sbjct: 618 VARDGQIIWVLDKGNLVTGTDGK-EHIFRTLINITQSKQAQEELR 661


>gi|70730754|ref|YP_260495.1| rtn protein [Pseudomonas fluorescens Pf-5]
 gi|68345053|gb|AAY92659.1| rtn protein [Pseudomonas fluorescens Pf-5]
          Length = 512

 Score =  254 bits (648), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 7/252 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            +L  A+   E    + P++R       G+E L++W HPK G +    F+  AE   +I 
Sbjct: 264 HELQRALGAQEFIPYFQPVVRGDTLAWAGIEVLMRWQHPKEGLVRPDLFIPFAEHSGLIV 323

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR- 827
            +   ++++  + +             I INI +    D +L E  +  ++   + P + 
Sbjct: 324 PMTRSLMQQTQQALAPHAAHFTD-GFHIGINITASHCHDLQLLEDCREFLA--GFPPGKV 380

Query: 828 -IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + L  +E  ++     +  L   L ++G+ + +DDFGT  S L YL     D +K + S
Sbjct: 381 ILVLELTERELIEPTATTHQLFAALHELGVMIAIDDFGTGHSSLGYLRQFNVDYLKIDQS 440

Query: 887 LMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +         + IL SII ++  ++  I+A+ I        L   G D++Q      P+
Sbjct: 441 FVAMIGADALSLHILDSIIELSAKLDLGIVAEGIETAEQRDYLAAKGVDFLQGYLFGRPM 500

Query: 945 GFNSILKLLKER 956
                +  L   
Sbjct: 501 PSAEFVAALARH 512


>gi|288940465|ref|YP_003442705.1| response regulator receiver modulated diguanylate phosphodiesterase
            [Allochromatium vinosum DSM 180]
 gi|288895837|gb|ADC61673.1| response regulator receiver modulated diguanylate phosphodiesterase
            [Allochromatium vinosum DSM 180]
          Length = 1188

 Score =  254 bits (648), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 120/255 (47%), Gaps = 5/255 (1%)

Query: 709  EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
            ED+   +++ E  L + P +       VGLEAL +W   +   +    F+  AE   +I 
Sbjct: 937  EDIIQGLQHDEFSLHFQPKVSANSLRAVGLEALARWQR-QGRPVRPDRFIDAAERHGLIV 995

Query: 769  AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
             ++  +L++               P+ I  N+++  L D EL E ++  +     +P  +
Sbjct: 996  PLSQRLLDKALSASAMLIAAGF--PLPIAFNLSADWLTDIELPETIEQRLMSAGLAPEHL 1053

Query: 829  KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
             L  +ES +M +   S  +L RLR  G  L++DDFGT  S +  L  IPF  +K + S +
Sbjct: 1054 ILEITESRLMSDLSVSLDVLTRLRLKGFKLSIDDFGTGYSSMDQLQRIPFSELKIDRSFV 1113

Query: 889  TGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
             G+ E  K  AIL S + MA+ +  T +A+ +  + ++  +  +GCD +Q   +A  +  
Sbjct: 1114 QGAAEQSKSRAILSSSLDMARKLGLTSVAEGVETQTELDLVRGLGCDLVQGWLIARAMPI 1173

Query: 947  NSILKLLKERFPLVK 961
              ++  L+      +
Sbjct: 1174 ADLIDWLRLHETTPR 1188



 Score = 73.8 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRL 479
            D     +        I G +   + G     +    H          L + +   R   
Sbjct: 144 TDADGAILEANDKFIEISGYSREELIGRNHRLIKSGHHP---PALFDELWATISGGR-IW 199

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
           Q E + R  + + +W+   I P+ +  G   RY+ I  DITE K+ L      
Sbjct: 200 QGELQNRRKNGRPYWVRATIAPILDEQGRPERYVSIRTDITEHKQLLAQREHQ 252


>gi|332162187|ref|YP_004298764.1| hypothetical protein YE105_C2565 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666417|gb|ADZ43061.1| hypothetical protein YE105_C2565 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 509

 Score =  254 bits (648), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   ++  +G E L++W HP  G I  ++F+ +AE+  +I  +
Sbjct: 264 LKHALENNEFIPYLQPIVSGKEQCWIGCEVLMRWQHPGQGLIQPNQFIPMAEDSELIVPM 323

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 324 TRSIMQQVSAKFAPYVNQLP-EGFHFGFNISANHCRDLSLVDDCRNFIQAFGGNKINITL 382

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++     +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +  
Sbjct: 383 ELTERKLIVADATTDKLFAELHALGVFIAIDDFGTGHSSLTYLQKFKVDFLKIDQSFVGM 442

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  E  ++ L     DY+Q      P+  N 
Sbjct: 443 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENETQMRYLQAHNVDYLQGYMYGRPMPMNE 502

Query: 949 ILKLL 953
             + L
Sbjct: 503 FARYL 507


>gi|254431577|ref|ZP_05045280.1| diguanylate cyclase/phosphodiesterase, putative [Cyanobium sp. PCC
           7001]
 gi|197626030|gb|EDY38589.1| diguanylate cyclase/phosphodiesterase, putative [Cyanobium sp. PCC
           7001]
          Length = 617

 Score =  254 bits (648), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 160/423 (37%), Gaps = 13/423 (3%)

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+  R+  L +L   +  +A        ++   +  +++IN   G AV +  L   +RR+
Sbjct: 186 GLLGREEILRQLERKVAQAAGHP---FALVRCRLRDHERINAAFGAAVAEACLAEASRRL 242

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
             +L     +  +      ++        ++      +  +++    + +  + +  ++G
Sbjct: 243 LAVLPPGGAIGGIGEGDLLVLWPDPPPPERLDALGQRLTTAVSQLHRVGDVSVGMAMAVG 302

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSD--RVMIKEDLCLAVEN 717
            A       +S  +L +  LA+  A    G         S  +         +   A++ 
Sbjct: 303 IAVARGHGESSQALLADGGLALQRACTIQGCAWHGLDAQSRSATLGGFRFASEFHTALDE 362

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            +L   + PI+       +G EAL +W H +   +  + F+  A +  +   ++L MLE+
Sbjct: 363 RDLAPSFQPIVDPASGRPLGFEALARWQH-QGQLLPPARFLPEARDAGLTGEVDLLMLEK 421

Query: 778 IARDIISWRDQANMPP---IFILINIASKDLLDNELCEGMQALISKTLYSPSR-IKLSFS 833
               +    +     P   + + +N++S  L D  L   +   +          +++   
Sbjct: 422 ALAALPQLAEAPGGQPAAPMLMSVNLSSGVLSDPSLGARLLERLEAATLPAGWTLQVELL 481

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
           E     +       L RL  + +S+ +DDFGT  S L+ L  +P   VK + S +     
Sbjct: 482 EEAFHASSAAVDAFLQRLAALQVSVAIDDFGTGYSSLARLISLPIQRVKLDRSFIAQLDS 541

Query: 894 KRIA---ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSIL 950
              +   +L  ++ M ++++  I A+ +   +    L   G    Q    A PL  +  +
Sbjct: 542 GSRSPRTLLSRMVLMLRDLDLAITAEGVDSAVQRAWLLEQGIRSAQGYLFAPPLLLHEAV 601

Query: 951 KLL 953
             L
Sbjct: 602 AWL 604


>gi|152965949|ref|YP_001361733.1| diguanylate phosphodiesterase [Kineococcus radiotolerans SRS30216]
 gi|151360466|gb|ABS03469.1| diguanylate phosphodiesterase [Kineococcus radiotolerans SRS30216]
          Length = 444

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 117/244 (47%), Gaps = 3/244 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L   +E  EL + Y P++ L     VG+EAL++WDHP  G +    FM +AE   ++ 
Sbjct: 192 RRLRAGIEAGELVVHYQPVVDLTTGRRVGVEALVRWDHPDRGLLPPDAFMPLAEASGLVV 251

Query: 769 AINLFMLERIARDIISWRDQANM-PPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            +   +L +    +  WR +      + + +N++ + L + ++ E +   ++ +   P  
Sbjct: 252 PLGRRVLVQACAQVARWRREVPGAGDLRVAVNVSGRQLSEPDVHEVVAEALTLSGLPPQA 311

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +E+ + G      + L R+R +G+ L+LDDFGT  +  +YL     DTVK +   
Sbjct: 312 LLVELTETCLAGPGVEVDITLQRIRSLGVHLSLDDFGTGYASFAYLQRFQPDTVKIDRCF 371

Query: 888 MT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +   G +E+   + RS++ +A  +   ++A+ +        LTR+G  + Q    ++   
Sbjct: 372 VAALGRSERDDLLTRSLVELALRLGCDVVAEGVERREQAVALTRLGVRHAQGLLFSAARS 431

Query: 946 FNSI 949
              +
Sbjct: 432 GGDL 435


>gi|218508806|ref|ZP_03506684.1| two-component sensor histidine kinase protein [Rhizobium etli
           Brasil 5]
          Length = 231

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AEE  +I  +  ++L                PP  I IN++ K      L + +  +
Sbjct: 1   IGVAEETGLIIYLGRWVLHEACCTAAVMNADGL-PPHKIAINLSPKQFQCPRLSQTVADV 59

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + +T      I++  +ES+++ N E     L +L   GIS+++DDFGT  S LSYL   P
Sbjct: 60  LQETGCRAEWIEVEITESLLLHNCEGVSTTLSQLHASGISISIDDFGTGYSSLSYLANFP 119

Query: 878 FDTVKFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQD 937
            DT+K + S +  S ++   ++++I+ +A+ +   ++A+ +      K L   GC   Q 
Sbjct: 120 IDTLKIDRSFINRSDKRSRELVKAILSIARCLGQNVLAEGVETVYQEKFLAESGCAVAQG 179

Query: 938 SHVASPLGFNSILK 951
            + + P+  + +L 
Sbjct: 180 FYYSKPIPKSELLA 193


>gi|85712180|ref|ZP_01043232.1| response regulator [Idiomarina baltica OS145]
 gi|85693988|gb|EAQ31934.1| response regulator [Idiomarina baltica OS145]
          Length = 683

 Score =  253 bits (647), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 2/254 (0%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           D+   + + E + VY P + L   E  G+E L++W HP    I  SEF+  AE   +I  
Sbjct: 145 DVLKGIRDHEFFCVYQPKVGLPTHEPEGVEVLLRWQHPILDAIPPSEFITFAEREGLIDD 204

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +  F +            +  +  + I INI++     + L + + A   +    P RI 
Sbjct: 205 LTQFAIAESLTWFSEIIQRVALNSLSIAINISALVFSKDWLLDFLMATCQQNAVPPQRII 264

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +ES V+ +          LR  G   +LDDFGT  S L  L  +P   +K + S + 
Sbjct: 265 LEITESAVLDDQADVLKRALDLRLRGFRFSLDDFGTGYSSLKQLVRLPLSELKIDKSFVL 324

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
               +++   I+R+ + +A+++    +A+ +  E     L ++GCD +Q    A PL  +
Sbjct: 325 SYEDSDESKQIMRATVELAQSLGLKTVAEGVECEETATYLRQIGCDTLQGYLFAKPLEGS 384

Query: 948 SILKLLKERFPLVK 961
                L ++     
Sbjct: 385 RAEAWLMKQAAATS 398


>gi|167033505|ref|YP_001668736.1| diguanylate phosphodiesterase [Pseudomonas putida GB-1]
 gi|166859993|gb|ABY98400.1| diguanylate phosphodiesterase [Pseudomonas putida GB-1]
          Length = 528

 Score =  253 bits (647), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 7/264 (2%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                      + +L  A++  E    + P++R  D    G E L++W+HP+ G +    
Sbjct: 251 CRWQIRRVTSPRAELDRALQADEFLPYFQPVVRKGDYRWAGAEVLMRWNHPREGLVRPDL 310

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE    I A+   ++   A+ +  +          + INI +    D  L +  + 
Sbjct: 311 FIPYAEHSGQIVAMTRALMTHTAQSLAPY-AGLMEDGFHVGINITADHCRDLRLLDDCRT 369

Query: 817 LISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +      P R  + L  +E  ++     +  L  +L  +G+ + LDDFGT  S L+YL 
Sbjct: 370 FLQHF--PPGRVVLTLELTERKLIEPTPVALELFEKLHAMGVMIALDDFGTGQSSLNYLR 427

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +K + S +         + IL SII ++  +   I+A+ +  +I    L   G 
Sbjct: 428 QFKVDYLKIDQSFVAMIGADALSVHILESIIELSAKLGLGIVAEGVETDIQRDYLAEHGV 487

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D+ Q    A P+     L+ L  R
Sbjct: 488 DFQQGYLFARPMPAAQFLEALATR 511


>gi|170724221|ref|YP_001751909.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
 gi|169762224|gb|ACA75540.1| diguanylate cyclase/phosphodiesterase [Pseudomonas putida W619]
          Length = 648

 Score =  253 bits (647), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 175/435 (40%), Gaps = 22/435 (5%)

Query: 521 EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKIN 580
           EQ +  E +   ++QD+LTG+ NR+ F  +L T +  S  ++     ++++ +     +N
Sbjct: 224 EQAERSERLRTESYQDSLTGLSNRRYFEMQLNTRV--SNLEEARAGYLLLLRVQDLTGLN 281

Query: 581 DVLGIAVGDDVLVSLTRRIGELLKF----PDILARLSGNRFGIILISENNSLKIADFAIA 636
             LG    D +L ++  ++           D+++R  G  F ++     +   +   A A
Sbjct: 282 ARLGGQRTDQLLQAVGVQLQRTCAKFPETKDLISRSRGGEFAVLAPGMVHEEAV-QLAQA 340

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR---GGNHVE 693
           +  ++         ++   A IG A ++        +LK A+ A+  A+++   G   +E
Sbjct: 341 LEATLQSLHETGATDVDPVACIGLAPFSP-GDAPQALLKLADEALARAENQPTPGWVCLE 399

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMD-EEIVGLEALIQWDHPKWGNI 752
               +            L  A    +  L + P++   D + ++  + + +    +   +
Sbjct: 400 QGAAAVAGDSHHAWHTRLEQAFVKGQFELFFQPVVECKDVQRVLHYKVISRLHDDEGEAV 459

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
            +  F+   E    +  +++ +LE++   + S           + +N+++  L D    +
Sbjct: 460 PAGRFLPWLERFGWMTRLDVLVLEKVLAHLRS-------HDQVLALNLSAATLADPNALQ 512

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L+ +      R+ L   E   +        L  RL  +G  L L  FG + S++  
Sbjct: 513 RVYDLLGQYTALGPRLVLEIGE-EQLPAQAVLEQLTRRLHGLGFGLALQRFGGRFSMIGN 571

Query: 873 LGYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L ++    +K +GS +     +  +   + +I   A +I+  +IA+ +  E + + L  M
Sbjct: 572 LAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRAAHSIDLPLIAERVETEGERQVLLEM 631

Query: 931 GCDYIQDSHVASPLG 945
               IQ   V  P  
Sbjct: 632 EVKGIQGQLVGEPAP 646


>gi|254506002|ref|ZP_05118147.1| sensory box protein/ggdef domain/eal domain [Vibrio
           parahaemolyticus 16]
 gi|219551225|gb|EED28205.1| sensory box protein/ggdef domain/eal domain [Vibrio
           parahaemolyticus 16]
          Length = 532

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 124/263 (47%), Gaps = 6/263 (2%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
            +      +  ++  L  A+   ++ L   PI+ +   ++VG EAL++W+HP  G IS  
Sbjct: 253 MIRYQTLVKRSVEYSLVNAIHQEQIELYLQPIVDIHSRKVVGSEALVRWNHPVQGQISPE 312

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
           +F+ +AE+L +I  +  +    + R +    D       +I INI+   ++  E  E + 
Sbjct: 313 QFIPLAEKLGIIDRVTEYAFREVTRFLKRNPDYCEHN--YISINISRYQIVKPEFVEYLT 370

Query: 816 ALISKTLYSPSRIKLSFSESVVM--GNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
               +     SRI L  +E+V +     + +   L +++ +G  + +DDFGT  S L+ +
Sbjct: 371 NYAKRHPKLVSRILLELTENVDLTSEQLDLALTHLTQIQSLGFEIAIDDFGTGYSGLNLI 430

Query: 874 GYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             + FD VK +   +           +L+S+I +A ++   +IA+ +  E  I++L ++G
Sbjct: 431 RQMKFDVVKIDQVFIKSLHSDSNIKPVLKSMIQLATDLGMRVIAEGVETEYQIEQLEQLG 490

Query: 932 CDYIQDSHVASPLGFNSILKLLK 954
             YIQ  + A P+         +
Sbjct: 491 VKYIQGFYYARPIKPEDFAVFYQ 513


>gi|317470811|ref|ZP_07930193.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901710|gb|EFV23642.1| GGDEF domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1239

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 4/316 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F  + ++  +    + +    ER  + +  S D++++WD+ +D++  + +     G    
Sbjct: 627 FRTLINITQSKQAQEELRLTLERHRIIMEQSNDVIFEWDMKKDKMLYSSNWEKKFGYIPV 686

Query: 444 SMHGPIRNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
                 R     +IH  D +    +L    G      Q EFR+   D  + W  ++    
Sbjct: 687 MEEASERLLTQSHIHPEDLEVVEELLRDM-GGSMPYGQAEFRLADRDGCYRWYKVKATAQ 745

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G   + +GI  DI ++K++ + +   A +D LTG+ NR++    +   L+    D 
Sbjct: 746 FDRAGKPFKAVGIMADIDDEKRASQALEEKASRDELTGLYNRKTARKEIEYYLER--RDP 803

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                +M+ID+D +K IND  G   GD VL  ++  +  +L+  D+++R+ G+ F I + 
Sbjct: 804 KEMAAMMLIDVDDFKLINDRYGHMFGDAVLQEISSVLTRVLRKEDVISRIGGDEFLIFMK 863

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
                  +   A  +R+S              + SIG A          ++ ++++LA+Y
Sbjct: 864 DIRRVDILKSRAEKIRESFQSMFRQNMTSCEFSTSIGIACCPQDGTRFEDLFRHSDLALY 923

Query: 683 HAKHRGGNHVESFRVS 698
            AK RG N    +  S
Sbjct: 924 DAKSRGKNGYSLYEHS 939



 Score = 68.4 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 427 RVTTTPDIATILGLASGSMHGPIR-NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRV 485
            +     +  +LG  +  +    R ++L  I+  DR+         +      ++ E+RV
Sbjct: 542 MLQINEGLENLLGYEAWEIKEKFRGHYLEVIYPPDREEVLAQTKKQLS-SGNVIELEYRV 600

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
            A D Q  W++ +   ++ ++G          +IT+ K++ E + 
Sbjct: 601 VARDGQIIWVLDKGNLVTGTDGK-EHIFRTLINITQSKQAQEELR 644


>gi|302879572|ref|YP_003848136.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
            capsiferriformans ES-2]
 gi|302582361|gb|ADL56372.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
            capsiferriformans ES-2]
          Length = 1009

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 145/356 (40%), Gaps = 20/356 (5%)

Query: 353  GLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVL 412
              W  +   +  +     ++   VLI  ++ F  I          + +    +R      
Sbjct: 656  VFWHRLGVPIPVEYWSRPIINDGVLIGCIVTFIDIS---ERKEAEEKLRYSEQRFHDVSD 712

Query: 413  GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
             +G+ +W+ D        +     + G     + G   + + ++   D +N   I++  +
Sbjct: 713  AAGEYLWELDANMIYTYVSTRAIDVKGYTPEELLGK--SPMAFMPEEDIENVGNIINRAI 770

Query: 473  GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              R G  + E R         W  +   P+ + NG+++   G   +I+E+K+  E +   
Sbjct: 771  TSR-GPFKLEHRDITKSGALVWEEVNGLPIYDKNGEVIGLRGTGLNISERKEMEERVHQL 829

Query: 533  AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
            AF D LT +PNR+   DRL+  +  +     L   +M +D+D +K +ND  G  VGD +L
Sbjct: 830  AFYDPLTSLPNRRLLNDRLSQAMS-AGERSGLYGALMFLDLDNFKPLNDTHGHGVGDLLL 888

Query: 593  VSLTRRIGELLKFPDILARLSGNRFGIILISENNSL-----KIADFAIAMRKSIAMPI-- 645
            +    R+ + ++  D +AR  G+ F ++L   +        +    A  +  +++ P   
Sbjct: 889  IEAASRLKKCVRGMDTVARFGGDEFVVMLSELDAGKSDATVQARLVAEKILAALSEPYVL 948

Query: 646  ------NLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
                       E   TASIG   + +      ++LK A+ AMY AK  G N +   
Sbjct: 949  KISTSDEFSSVEHHCTASIGVTVFLNHVTRQDDILKQADDAMYVAKGAGRNSIRFH 1004



 Score = 64.6 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 9/152 (5%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSMHGPIR 450
                   + +  ++ +L +    +  +  D   + +        ILG  +   + G   
Sbjct: 560 ERKQVETALQNSNQQLNLLLDSMAEGTYGVDTNENCIFVNHSFLKILGYQSQDEVVGKNI 619

Query: 451 NWLPYIHINDRDNFRTILDSF----VGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSN 506
           + L +    D   +           +         E            +    RP+ N +
Sbjct: 620 HELIHHSHADGTPYPASECRIYASNLRNENLHCDDEV-FWHRLGVPIPVEYWSRPIIN-D 677

Query: 507 GDILRYIGIANDITEQKKSLEGILC--NAFQD 536
           G ++  I    DI+E+K++ E +      F D
Sbjct: 678 GVLIGCIVTFIDISERKEAEEKLRYSEQRFHD 709



 Score = 55.7 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 56/179 (31%), Gaps = 17/179 (9%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +    I   L       +++  +   +  +        +    +  +  +  +   ++  
Sbjct: 279 ISRSDILLYLTPVFAFFLLMAIYVYYRRKVEREMAGAALAEAKKLLATIIDTAPIRIFWK 338

Query: 422 DIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDS--------FVG 473
           D     +      +   G           +    I  +D         +         + 
Sbjct: 339 DKHLKYLGCNAIFSKDAG---------AESPNEVIGKDDYQMVWRAQAAEYRQDDLAVIA 389

Query: 474 YRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
             + +L YE +      +  W+     P+ NS+G+I+  +G+  DITE+K + E +   
Sbjct: 390 SGQTKLFYEEQQTTPAGEVIWLHTSKVPLKNSSGEIIGILGVYEDITEKKHTEEQMQFL 448



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 66/221 (29%), Gaps = 26/221 (11%)

Query: 395 YFSQGIFSDGERQSLAVLGS----GDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPI 449
             ++   ++ + Q L +        D+V    +    +T   P    +LG   G ++G  
Sbjct: 434 DITEKKHTEEQMQFLLLEQKAMLENDLVGIVRVQDRVITWANPSFEHMLGYGKGELNGKP 493

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                       D       +    +  R Q E      D +  W+ I    ++ + G+ 
Sbjct: 494 TRICYINDKAYHDLGEAAYPALKSGKVYRTQLEH--ACKDGRVIWVDISGTTLNATTGES 551

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           L       DITE+K+              T + N    L+ L   +       +     +
Sbjct: 552 LWA---FLDITERKQVE------------TALQNSNQQLNLLLDSMAEGTYGVDTNENCI 596

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILA 610
            ++    K    +LG    D+V+      +           
Sbjct: 597 FVNHSFLK----ILGYQSQDEVVGKNIHELIHHSHADGTPY 633


>gi|254415498|ref|ZP_05029258.1| cyclic diguanylate phosphodiesterase (EAL) domain, putative
           [Microcoleus chthonoplastes PCC 7420]
 gi|196177679|gb|EDX72683.1| cyclic diguanylate phosphodiesterase (EAL) domain, putative
           [Microcoleus chthonoplastes PCC 7420]
          Length = 267

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 12/261 (4%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIR--LMDEEIVGLEALIQWDHPKWGNISS 754
           +          ++ L  A+      L + PI      DE  V  E LI+        I  
Sbjct: 1   MQQNLCQESTSRQALQTALIEDRFCLYFQPIFPLLQGDEGHVHKEILIRMVGQDGRIIPP 60

Query: 755 SEFMLIAEELCMIKAINLFMLERIA-------RDIISWRDQANMPPIFILINIASKDLLD 807
           + F+  AEE  ++ +I+ ++LE          + +  W        I I  N++   + D
Sbjct: 61  NYFLPCAEESGLMPSIDRWVLESFFNGIYHPSKCMGCWARDYYCGCI-IAFNLSGSSVND 119

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
           +   + ++  +      PS +    +E+V + N +++R  + RL+ +G    LDDFGT  
Sbjct: 120 DSFLDFLENAVINHPVPPSSLVFEITETVALINIDKTRQFIQRLQNLGCQFALDDFGTGM 179

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S L+YL  +P D VK +G  +          AI+ +I+ MAK  +   IA+ +     ++
Sbjct: 180 SSLAYLKELPLDFVKIDGMFVRDVVQNPISEAIVSAIVQMAKAKQIKTIAEYVENVAILE 239

Query: 926 ELTRMGCDYIQDSHVASPLGF 946
            L  +G DY Q  ++  P   
Sbjct: 240 RLQALGVDYAQGFYLGKPTPI 260


>gi|218885315|ref|YP_002434636.1| EAL domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756269|gb|ACL07168.1| EAL domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 762

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 3/240 (1%)

Query: 716 ENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFML 775
            N E++L Y P IR+ D    G EAL++W HP +G I+    + +AE+  +I  + +F+L
Sbjct: 505 RNGEVFLEYQPQIRM-DGRAHGAEALLRWHHPAYGRIAPPITVALAEDTGIIDRLGMFVL 563

Query: 776 ERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSES 835
            R     ++W  +       + +N+A + L +      + A++++T  +P  ++L  +ES
Sbjct: 564 HRACARRVAWTGEVPD-GFVMSVNVAPRQLQNPRFDRDVLAVLARTGLAPHLLELELTES 622

Query: 836 VVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK- 894
            V+    R+   L RLR  G+ + +DDFG   + L YL   P DTVK + SL   S    
Sbjct: 623 TVLLPDARTVAALRRLRAAGVRVAIDDFGMGHASLRYLRDFPVDTVKIDRSLTEASHGDV 682

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              I+RSI+ +A++++ T + + +      +    +GC   Q    + P+     L+++ 
Sbjct: 683 NEHIVRSIVELARSLDITTLVEGVERREQFERFVELGCLVFQGYLFSRPVRAVQCLEVVS 742


>gi|148358999|ref|YP_001250206.1| hypothetical protein LPC_0884 [Legionella pneumophila str. Corby]
 gi|296107048|ref|YP_003618748.1| Rtn protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148280772|gb|ABQ54860.1| conserved hypothetical protein; DUF2 [Legionella pneumophila str.
           Corby]
 gi|295648949|gb|ADG24796.1| Rtn protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 532

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 5/252 (1%)

Query: 706 MIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELC 765
            ++  + LA++N E Y VY P+    +E   G E L++W++     I    F+  AE   
Sbjct: 279 SLQGAIKLAIKNEEFYPVYQPLFDCDEERFTGAEVLLRWENEDSQIIMPDFFIAEAEATG 338

Query: 766 MIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           +I  I L ++E   ++  S  ++ +     +  NI++    D+        LI K   SP
Sbjct: 339 LIVPITLQIIEIAFKEFRSLFEERSY--FHLAFNISALHFTDSVFFNHFHKLIEKYSISP 396

Query: 826 SRIKLSFSESVVMG-NPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFN 884
            +I    +E  ++  N       +  LR+ G SL +DD+GT  + +SYL + PF+ +K +
Sbjct: 397 HQIIFEITERELLDKNDTTFINKMQELRQAGFSLAVDDYGTGHASISYLQHFPFNYLKID 456

Query: 885 GSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVAS 942
              +          ++  +II MAK +    IA+ +  +     L   G    Q  + + 
Sbjct: 457 KLFVQAIGSNDIIESLNDAIIQMAKGLNLVTIAEGVETKDQANYLANNGVRLQQGWYYSK 516

Query: 943 PLGFNSILKLLK 954
            L    +  LLK
Sbjct: 517 GLSIAELTALLK 528


>gi|289625595|ref|ZP_06458549.1| GGDEF domain/EAL domain-containing protein [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
          Length = 218

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 104/209 (49%), Gaps = 3/209 (1%)

Query: 750 GNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNE 809
           G +  SEF+ +AE+  +I  +  +++ R  RD+ + R+Q    P+ + IN++ +   D++
Sbjct: 1   GLLPPSEFVPLAEQSGLIVPLGYWVIFRALRDMQALREQ-GFAPLHMAINLSFRQFQDSQ 59

Query: 810 LCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSL 869
           L   +  LI +       ++   +E+ VM   ++    +  +R++G+  +LDDFGT  S 
Sbjct: 60  LLPTLSRLIEELSVDAHWLEFELTETAVMRRSDQVLQTMDAMRRLGVRFSLDDFGTGYSS 119

Query: 870 LSYLGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKEL 927
             +L  +P   +K +   +      E+   ++ ++I +A N+   ++A+ +     ++ L
Sbjct: 120 FMHLNSLPIALLKIDMGFVGQMELREENRKLVNAMIKLAHNLNLEVVAEGVETAGQLELL 179

Query: 928 TRMGCDYIQDSHVASPLGFNSILKLLKER 956
              GCD +Q   ++ PL    ++  L+  
Sbjct: 180 RDFGCDQVQGYLISRPLPIADLVAYLRSE 208


>gi|170769921|ref|ZP_02904374.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia albertii TW07627]
 gi|170121215|gb|EDS90146.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia albertii TW07627]
          Length = 528

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+E  +L L Y PII +  E+ +G EAL++W   +   ++ +EF+ +AE+  MI+
Sbjct: 273 RKLQRALEKRQLCLYYQPIIDIKTEKCIGAEALLRWPGNQGQVMNPAEFIPLAEKEGMIE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  ++++ +  ++ ++         +I IN+++ D   + +         +    P +I
Sbjct: 333 QVTDYVIDNVFSELGAYLATYADR--YISINLSASDFHTSRVIARTNQKTEQYAVRPQQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K   +E V + +  +   ++   R+ G  + +DDFG   S L  L  +  D +K + S +
Sbjct: 391 KFEVTEHVFL-DVTKMTPIIQAFRQAGYEVAIDDFGIGYSNLHNLKSLNIDILKIDKSFV 449

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T  + +  I   II +A  +    IA+ +  E  +  L + G  Y Q    A  +  
Sbjct: 450 ETLTTHKTSHLIAEHIIELAHTLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPP 509

Query: 947 NSILKLLKE 955
              +   ++
Sbjct: 510 QVFMAWAEQ 518


>gi|237747664|ref|ZP_04578144.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229379026|gb|EEO29117.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 661

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 177/442 (40%), Gaps = 21/442 (4%)

Query: 514 GIANDI-TEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVID 572
           G   DI +EQ+ SLE I   A+ D+ TG+ NR  F  RL  +++  +  D     +M I+
Sbjct: 217 GKIRDIFSEQEASLERIRNAAYTDSTTGLANRTYFNMRLRHMIE--SGTDFEHGVLMFIE 274

Query: 573 IDKYKKINDVLGIAVGDDVLVSLTR----RIGELLKFPDILARLSGNRFGIILISENNSL 628
           I    ++N   G   GD +L  +++    RI        +L+RLSG  F + +       
Sbjct: 275 ISHLIELNKQSGHLAGDTLLKGVSQLIKDRISTFPANEILLSRLSGATFAVAISGIPEKQ 334

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              +FA ++   ++          T    IG A    +     E+L  A++A+  A+ +G
Sbjct: 335 -AEEFANSLASDLSGLHEKGLTPFTDVGHIGLAF--HTSQNLPELLSEADMALRAAQIKG 391

Query: 689 GNHVESFRVS----SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIV-GLEALIQ 743
            N V   R +                L   ++     L+   ++   D  ++   E L++
Sbjct: 392 PNAVHYHRNNIAGDFDSLTATQWISLLNKVIDEKRFTLLLQSVMMAEDPAVIRQQEVLLR 451

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
             + +   I +S F+ +     + +A++  ++  +   +    + A      + +N+   
Sbjct: 452 IANDENKLIPASIFIPMIHHHGLTRALDKMIVTAVLEQLAKQENLAGN----VSVNLMPA 507

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            + D E    + + +       +R+     +  +  N   +  L   +   G  + +D F
Sbjct: 508 SIQDPEFVTWLSSTLLSRPKLANRLLFELDDYGISQNLYAALNLQQAIASTGAGIGIDHF 567

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTE--KRIAILRSIIPMAKNIETTIIAKDIYGE 921
           G   + LS LG +    +K +GS +            +  ++ MA   +  +IA+ I  +
Sbjct: 568 GRNITALSSLGALKPAYLKIDGSFIRNIDTNRDNQQFVELLVTMAHAQDILVIAESIEND 627

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
            +++ + ++  D +Q   +  P
Sbjct: 628 NEMEMVRKLRVDGLQGYALHRP 649


>gi|126668634|ref|ZP_01739586.1| sensory box protein [Marinobacter sp. ELB17]
 gi|126626893|gb|EAZ97538.1| sensory box protein [Marinobacter sp. ELB17]
          Length = 400

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 143/305 (46%), Gaps = 11/305 (3%)

Query: 400 IFSDGERQSLAV---LGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
           +     +  LA      + D V   D+    ++  P    I G       G        +
Sbjct: 102 LKEVEAKLKLAACVFDNTLDGVLITDVNGVILSVNPGFVEITGYTLEESVGQTP---RIL 158

Query: 457 HIN--DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           H +  D+  + ++ +      +GR   E   R  D + +   + I  + +  G+ +RY+ 
Sbjct: 159 HSDRHDQAFYESMWEEI--NAKGRWHGEIWNRRKDGELYLQRMTISMVLDDAGEPMRYVS 216

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           + +DIT   +  E I   AF D LT +PNR   +DR+   +  +  +++    +M +D+D
Sbjct: 217 VFSDITALWQKDEHIRHLAFHDALTDLPNRTLLMDRINQQILHANREES-HFALMFLDLD 275

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
            +K +ND LG   GDD+L  + +R+  L++  D +AR+ G+ F  +L +     +I + A
Sbjct: 276 GFKLVNDQLGHKFGDDLLKDVAKRLLALVRSSDTIARVGGDEFIFLLNNPRGRDEITEVA 335

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +  SI  PI +L   + +  S+G A++ +   +SS+++ NA+ AMY AK  G N++  
Sbjct: 336 NRIVASINEPIEILGVVVQIGVSLGIATFPADGDSSSDLIINADSAMYAAKSVGKNNIRF 395

Query: 695 FRVSS 699
           F    
Sbjct: 396 FSAEH 400



 Score = 42.2 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 421 WDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQ 480
           WD            +   G+    + G    +   +           + + +     R +
Sbjct: 5   WDRDLRCRYANNAFSEWFGMPPEDVIG--IRFQDLVSEQLYAMNEPHIRAVLAGEPQRFE 62

Query: 481 YEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
               +  AD     +I    P   ++G +  +   A++IT  K+    +   A
Sbjct: 63  RT--LNKADGSVGHIIGNYIPDFEADGTVQGFSIQASEITVLKEVEAKLKLAA 113


>gi|90410537|ref|ZP_01218553.1| hypothetical protein P3TCK_21300 [Photobacterium profundum 3TCK]
 gi|90328778|gb|EAS45062.1| hypothetical protein P3TCK_21300 [Photobacterium profundum 3TCK]
          Length = 507

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 4/281 (1%)

Query: 674 LKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDE 733
           L  A++    A       +    +   +     +KE + L ++N E    Y PII    +
Sbjct: 216 LIKADVIFVQAILCIILLLICLLLGLLKGQNSTLKELIYLGLKNKEFIPFYQPIIDSSSK 275

Query: 734 EIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPP 793
           ++VG E L++W       IS + F+ IAE    I  +   +L +++ DI  +      P 
Sbjct: 276 QVVGCEILVRWIKKNGEIISPNLFIPIAEYNGQIFELTYDLLNQVSADIGKF--ALKHPD 333

Query: 794 IFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRK 853
            ++ +N+  + L D+   E +  ++       + I    +E     N +++  ++ +L+ 
Sbjct: 334 FYVSLNVVPEQLEDDNFAENVFKILKNHNIEANHIAFEVTERTPFTNLKKAERVINQLKN 393

Query: 854 IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIET 911
             I + LDD GT     SYL  +P DT+K +   +           IL SII   KN   
Sbjct: 394 QKIDIKLDDAGTGYGGFSYLQELPIDTLKIDKMFVETIGTNDVKSKILSSIILFGKNAGL 453

Query: 912 TIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKL 952
            +IA+ +  +  +  L   G   +Q  + A P+ F    + 
Sbjct: 454 KMIAEGVESQEQVDYLNLKGITLMQGYYYAKPMPFEEFTRY 494


>gi|153953046|ref|YP_001393811.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853701|ref|YP_002470823.1| hypothetical protein CKR_0358 [Clostridium kluyveri NBRC 12016]
 gi|146345927|gb|EDK32463.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567425|dbj|BAH05409.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 126/249 (50%), Gaps = 4/249 (1%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           +  DL  A++N+++ L Y P +     +I G+EAL++W H  +G I     + +A E  +
Sbjct: 95  LTADLEYALKNNKVMLFYQPQVDYK-GDIFGVEALLRWKHDIYGYIYPPLVIALASEGHL 153

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           +  ++ ++L R+  D+           I + IN++   L ++     +Q  I K   +  
Sbjct: 154 MDKLSYWILNRVCSDLNKMNKLGFR-NIIVSINMSVAQLENDYFVNNLQKSIKKHKIAQD 212

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
           ++++  +E + + + +  R  +  ++K+G+ L +DDFG   S L YL    FDT+K +GS
Sbjct: 213 KLEIEITEQIALRSSKDIRDRIMAMKKLGVRLAMDDFGIGHSSLMYLKEYEFDTIKLDGS 272

Query: 887 LMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
           L+           I++SI+ + K++  ++IA+ +  E     L  +GC   Q    + PL
Sbjct: 273 LVREILYNNNCRDIIQSIVSLGKSLNYSVIAEYVEEEEQRDILYELGCHRYQGYLYSKPL 332

Query: 945 GFNSILKLL 953
            ++ +++ L
Sbjct: 333 NYDELIEYL 341


>gi|313112944|ref|ZP_07798588.1| diguanylate cyclase domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624709|gb|EFQ08020.1| diguanylate cyclase domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 771

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 120/279 (43%), Gaps = 20/279 (7%)

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           GG H  +  + S    +  +  +L  A++N E      P    M   IVG+EAL++W+HP
Sbjct: 32  GGMHRFTPAMLSRLKKQRQLLSELEHALKNHEFCFFLQPKCNSMTRAIVGMEALVRWNHP 91

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
             G +  SEFM + E   ++  ++ ++ E + + +  W++  +        N+    +  
Sbjct: 92  TRGCVPPSEFMPLLESTGLVTQLDQYIWESVCKTLHKWQESGS--------NLVPVSVNV 143

Query: 808 N-------ELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTL 860
           +       ++ +    L+ K    P  +    +E+++  N       +  L + G S+ +
Sbjct: 144 SVVDIVNLDVPQIFSNLVEKYQLEPKLLLAEITETMLAENASLVENTIQGLHRKGFSVMM 203

Query: 861 DDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA----ILRSIIPMAKNIETTIIAK 916
           DDFG+  S L+ L     D +K +  L+    ++  +    I+ S++ MA  +   IIA+
Sbjct: 204 DDFGSGYSSLNMLKDTNVDAIKLDMKLI-DMNQQNRSKGVQIVESVVDMAHRLNLPIIAE 262

Query: 917 DIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            +     +  L    C Y Q  +   P+   +   LL +
Sbjct: 263 GVETPEQVSMLQAADCLYTQGYYFYKPMPVENAEALLAQ 301



 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 98/317 (30%), Gaps = 30/317 (9%)

Query: 454 PYIHINDRDNF-----RTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
             IH +D + F        L S V   +    Y FR +    QF W+ +   P  N    
Sbjct: 392 KVIHPDDAEMFTDQTDLEALRSAVFSTQQPEAYRFR-KNVSGQFVWITMEFLPCRNCCAQ 450

Query: 509 ILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTV 568
                 +  +  +     E +  +   D LTG+ NR  F   L T+       +      
Sbjct: 451 NPWATVVVREDAQANHLSEELDFSYSHDTLTGLLNRSLFETDLRTL----QASEYDSMVC 506

Query: 569 MVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSL 628
             ID+    +IN+ LG   GD +L  +     +       + R+ G+ F  IL       
Sbjct: 507 TYIDVVGLHEINNHLGHRSGDAMLCFIANAARKFFVSS-RIYRIGGDEFV-ILTPNQPPY 564

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
            +      MR  +       E EI+V         T+      + +  AE AM   K   
Sbjct: 565 SVWVAVDKMRAFLRA----KEYEISVGI-----QSTNDLHRLDDAMNQAEAAMRQDKQA- 614

Query: 689 GNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPK 748
             +  + +    R     +++ L    +      V  P           +  +       
Sbjct: 615 -YYARNGQERQLRGLNEKLEQTLTEKRDAEHFLRVLAPKY-------KSVFVVDLKTDRM 666

Query: 749 WGNISSSEFMLIAEELC 765
            G I    F  I +   
Sbjct: 667 RGVIVPDYFQKILDTSG 683


>gi|291614820|ref|YP_003524977.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
 gi|291584932|gb|ADE12590.1| diguanylate cyclase with PAS/PAC sensor and hemerythrin-like
           metal-binding domain [Sideroxydans lithotrophicus ES-1]
          Length = 784

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 135/365 (36%), Gaps = 15/365 (4%)

Query: 344 WILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSD 403
           W+   ++     +                         +       +             
Sbjct: 305 WLAGLLFLFTSGLIAAWFRQWRR-------------RDLAEAEAAILKERVRADALKMEG 351

Query: 404 GERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDN 463
            +R   A   +   +    +  + +        + G +   +     +W    + +D + 
Sbjct: 352 EKRFRTAFEHTALPMVRNSLTGEFIEVNDAWCNMFGYSRDEVSSKHLDWQQVTYPDDMEP 411

Query: 464 FRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQK 523
             T++   +       + E R    D +  W  ++++ + +  G     I    DITE+K
Sbjct: 412 GATLVKQMLAGEISDFKIEKRYLQKDGKVLWGSVQVKLVRDEQGVPEFVISAIQDITERK 471

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
            + + I   A+ D LTG+PNR    DRL   +  +  D      ++  D+D +K +ND+ 
Sbjct: 472 LTEKTINFMAYHDKLTGLPNRALLFDRLAQAMSQAKRDAKY-VALLFADLDGFKAVNDLY 530

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G   GD+VL    +R    ++  D +AR  G+ F IIL + ++ L+    A  + ++ A 
Sbjct: 531 GHEAGDNVLKMAAQRFLACVRAVDTVARFGGDEFAIILGNLDDPLQAKGVAEKIVQAFAQ 590

Query: 644 PINL-LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS 702
            I L   RE TV AS+G + +         ++  A+ AMY +K  G N    +R  S   
Sbjct: 591 SITLSDGRECTVGASVGISIYPDHGSAMDNLMTAADQAMYESKRHGKNTYTFYRGKSSLG 650

Query: 703 DRVMI 707
                
Sbjct: 651 SESQW 655


>gi|237799879|ref|ZP_04588340.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022734|gb|EGI02791.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 190

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 774 MLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFS 833
           +L+R+   I  W          + +N++ + + ++ L   ++  +++    P  +++  +
Sbjct: 2   VLDRVCAQIAQWHRSGLGL-FQVAVNVSGQQISNSSLVADIRLALTRHQVEPQWLEVELT 60

Query: 834 ESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--S 891
           ES +M N   +   L  LR  G+S+++DDFGT  S L+YL   P D +K + + +    S
Sbjct: 61  ESSLMENTSHTIATLETLRASGVSISIDDFGTGYSSLAYLRRFPIDKLKIDIAFIREVTS 120

Query: 892 TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILK 951
             +  AI ++II +A ++   +IA+ +     +  L    CD IQ   ++ PL    +  
Sbjct: 121 NPQDAAIAKAIIELAHSLALKVIAEGVETPEQLTFLRENRCDQIQGYLISKPLPLAELEA 180

Query: 952 LLKE 955
            L  
Sbjct: 181 FLSR 184


>gi|238795870|ref|ZP_04639383.1| hypothetical protein ymoll0001_25420 [Yersinia mollaretii ATCC
           43969]
 gi|238720333|gb|EEQ12136.1| hypothetical protein ymoll0001_25420 [Yersinia mollaretii ATCC
           43969]
          Length = 490

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A++N E      PI+   ++  +G E L++W HP  G I  + F+ +AE+  +I  +
Sbjct: 245 LKQALDNGEFIPYMQPIVTGKEKYWIGCEVLMRWQHPGQGMIQPNHFIPMAEDSELIVPM 304

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 305 TRSIMQQVSAKFAPYVNQLP-EGFHFGFNISANHCRDLSLLDDCRHFIQAFGGNKINITL 363

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++   E +  L   L  +G+ + +DDFGT  S LSYL     D +K + S +  
Sbjct: 364 ELTERKLIVADEMTDRLFAELHALGVFIAIDDFGTGHSSLSYLQQFKVDFLKIDQSFVGM 423

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  +  ++ L     DY+Q      P+  + 
Sbjct: 424 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENDTQMRYLQAHNVDYLQGYMFGRPMPMSE 483

Query: 949 ILKLL 953
             K +
Sbjct: 484 FAKYM 488


>gi|332529868|ref|ZP_08405820.1| EAL domain protein [Hylemonella gracilis ATCC 19624]
 gi|332040662|gb|EGI77036.1| EAL domain protein [Hylemonella gracilis ATCC 19624]
          Length = 529

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 114/257 (44%), Gaps = 5/257 (1%)

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R+ +  ++ L ++  E +L Y P++ L     +G EAL++W  P+   +S   F+  A
Sbjct: 263 HRRLSLPGEIRLGLKRREFHLHYQPVVDLRTGRCIGAEALLRWRRPEGLPMSPDLFIPAA 322

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   MI+AI   +++   RD+ +       P   + IN +++DL  +     +   +   
Sbjct: 323 ERSGMIRAITAHVIDNALRDLPALLAL--QPDFHLGINFSAQDLEADGSITQLLRGLRAM 380

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + +  +E   + + + +   + RL   G+ + +DDFGT  S LS L  +  D +
Sbjct: 381 KAPAGSLVVEITERN-VTDAKAAAKQIARLHDHGVQVAVDDFGTGHSSLSVLAGLELDIL 439

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + S +     +  A  +L  II MAK +   +IA+ +  E     L   G    Q   
Sbjct: 440 KIDKSFVDAIDAQAAASMVLPHIIDMAKALSLFMIAEGVETETQADYLRERGVQLAQGWL 499

Query: 940 VASPLGFNSILKLLKER 956
              P+    +L LL+ +
Sbjct: 500 YGKPMPLEDLLDLLRTQ 516


>gi|218710940|ref|YP_002418561.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218323959|emb|CAV20321.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 850

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 170/440 (38%), Gaps = 36/440 (8%)

Query: 524 KSLEGILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDV 582
                 L  +++ D+ TG+PNR    +RL TIL            ++ + +  + ++N+ 
Sbjct: 423 HQQARRLTESYRIDSRTGLPNRIVLKERLNTILFNEH--------LLTLKLTNFHQVNEK 474

Query: 583 LGIAVGDDVLVSLT----RRIGELLKFPDIL----ARLSGNRFGIILISENN----SLKI 630
            G  VGD +L+ L+     R+   +     +      +    + II  +  +      + 
Sbjct: 475 YGYQVGDQLLLDLSNHFVDRLHLSVAKESKVKVELFSIGVGEWAIIFNASVDSVKIEQRF 534

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSS--KITSSEMLKNAELAMYHAKHRG 688
            +FA  +      P  L + +    +  G  +        +  E+L  A  A  +     
Sbjct: 535 VEFADGIEHINFEPYGLTDIDYLSVSLCGGFASRCDFLADSGDEILLKAIEARRYGVRNN 594

Query: 689 GNH---VESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWD 745
            +             R +++     +  A+ +  +     PI+     E++G E L++  
Sbjct: 595 THITNAKNIQVSEEDRKEQLGWLSCVSRAILDQNIITYSQPIVASGTHEMIGQECLVRIM 654

Query: 746 HPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDL 805
                 +   +F+ I  +  +   ++  M+      + +             IN++ +DL
Sbjct: 655 ESDGTIVLPGKFLPIIADTHLYTRLSRHMIRNTIGYMANKESSF-------SINLSPQDL 707

Query: 806 LDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGT 865
           L ++  E +++ IS     P+R+ L   ES  + +  R   +    R +G  + +DDFG+
Sbjct: 708 LSDKTLEVLESAISGMN-DPTRLGLEVLESEQIKDYGRMIEVCDHFRALGARIIVDDFGS 766

Query: 866 KCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEID 923
             S +  +  +    +K +GSL+       K+  I   ++ + +      +A+ ++ +  
Sbjct: 767 GYSNIDEIIKLEPQIIKLDGSLIRNIDKDPKQRNIASQLVRLCQVFNAKTVAEFVHNQQV 826

Query: 924 IKELTRMGCDYIQDSHVASP 943
            +   +MG DY+Q  +   P
Sbjct: 827 CEIAEQMGVDYLQGYYFGEP 846


>gi|326338524|gb|EGD62351.1| Rtn-like protein [Escherichia coli O157:H7 str. 1125]
          Length = 504

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 244 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 303

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 304 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 360

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L+ 
Sbjct: 361 VLHI--KNAISDKFNIVLEITERNLVEDTDHALQKINELRSHGCEFAVDDFGTGYCSLAL 418

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 419 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTSHQAEYLIHN 478

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 479 NVTLVQGYLYAKPMKATEFYQWYVNR 504


>gi|283784283|ref|YP_003364148.1| signal transduction protein [Citrobacter rodentium ICC168]
 gi|282947737|emb|CBG87292.1| putative signal transduction protein [Citrobacter rodentium ICC168]
          Length = 516

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+ N  + + Y P++ L   ++VG EAL +W  P    +S   F+ +AE+  + +
Sbjct: 273 HRLRDAIHNRNIKVHYQPVVSLASGKVVGAEALARWPQPDGCYLSPDFFIPLAEQTGLTE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   ++E +  ++  W  Q       I INI S+DL   +L   +  L+++   +PS+I
Sbjct: 333 PLTRLIIETVFEEMGKWLRQHPEQ--HISINIESEDLASEKLPALLSTLLNRHQIAPSQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R RK G ++ +DDFGT  S LSYL  +  D +K + S +
Sbjct: 391 ALELTEREF-ADPKTSSPIVARYRKAGHAVYIDDFGTGYSSLSYLQNLEVDILKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  +IA+ I      + L + G  Y Q    +  L    
Sbjct: 450 DALEYKN--VTPHIIEMAKALKLKMIAEGIETAKQEEWLRQHGVHYGQGWLYSKALPKAE 507

Query: 949 ILKLLKERF 957
            +   ++R 
Sbjct: 508 FILWAEKRL 516


>gi|291543520|emb|CBL16629.1| diguanylate cyclase (GGDEF) domain [Ruminococcus sp. 18P13]
          Length = 906

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/547 (14%), Positives = 190/547 (34%), Gaps = 55/547 (10%)

Query: 425 RDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFR 484
                   +   IL +     +G +            D F  ++         R    ++
Sbjct: 36  TREAYLDDNTFRILHIQKEHANGLLS----------HDRFTQVMQDITRNPVARQNQVYQ 85

Query: 485 VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA-FQDNLTGIPN 543
                      +       ++      ++G   DIT        +  +A   D LT + +
Sbjct: 86  Y--NVGSEQLQLRLSFVERDAQ----SWMGFVQDITHYNDGFCPMYQDAGEYDPLTHLYH 139

Query: 544 RQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELL 603
           R +F+ R    +            + ++ +   ++I    G +  D  ++++++ +    
Sbjct: 140 RSAFIRRTEQCMRECPGAG----YLAILHVHGIEQIAQQYGYSQNDRCVIAISQALRSFS 195

Query: 604 KFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLER--------EITVT 655
               I+   S   F ++ +  + + +       MR +I+  +   +            +T
Sbjct: 196 SPQVIIGMRSYKEF-MVYVGGSAAEQAGTIFQRMRAAISGCVITDDFGEVLKIDASDALT 254

Query: 656 ASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDL-CLA 714
            S+G++  T+       ++ +A  +++ A +   +     +           +  L    
Sbjct: 255 ISLGYSVRTAGSHDLDALINHANFSVFEAMNERKDICAFNKARYEADKTQFRELQLFRRL 314

Query: 715 VENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFM 774
           V ++     + PI+     EI   E L++        +++++ + IAE+   + A+    
Sbjct: 315 VSDNAFTYHFQPIVSAKTGEIFAFEILMR---AGDLPLTATQILRIAEQNKRLYAVEHAT 371

Query: 775 LERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSE 834
           L          ++  +   +F  IN     LL     + +             I +  +E
Sbjct: 372 LFNAMHAFTEHQEALSDKKLF--INGIPDHLLTETDFDLLHTT---YGELLENIVIEVTE 426

Query: 835 SVVMGNPERSRLLLGRLRK----IGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              +        L+  L+     +G    +DD+G   S  S L  +  D VK + +L++G
Sbjct: 427 QSDVD-----SDLVDTLKARCTTLGCQFAIDDYGAGYSNTSGLLLMMPDYVKIDRALISG 481

Query: 891 S--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K+  ++  II  A     ++IA+ +    +++ + ++G D IQ  + + P     
Sbjct: 482 IENDSKKQRLVSDIISFAHENGISVIAECVETRQELRTVIQLGADLIQGFYTSRPKPV-- 539

Query: 949 ILKLLKE 955
              LL++
Sbjct: 540 ---LLRQ 543


>gi|262045514|ref|ZP_06018536.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037207|gb|EEW38456.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 480

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 5/261 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            S  R      +  L  A+   +L L Y PII + +   VG EAL++W       ++ +E
Sbjct: 207 WSRTRRQYHSPRNMLQRALSCRQLRLHYQPIIDIKNNRCVGAEALLRWLGFDGPVMNPAE 266

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  +  ++++ +  ++  +      P ++I IN+++ D     L   +  
Sbjct: 267 FIPLAENEGMIAQVTDYVVDELFYEMGEFLAS--HPQLYIAINLSASDFHSARLISQISE 324

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                     +IK+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +
Sbjct: 325 KAHSYAVCIGQIKIEVTERGFI-DVPKTTPVIQAFREAGYEIAIDDFGTGYSNLHNLHAL 383

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + + +   T    +  I   II MA+ +    IA+ +     +  L + G  Y
Sbjct: 384 NVDILKIDKTFVDTLTTNNTSHLIAEHIIEMARGLRLKTIAEGVETPEQVSWLYKRGVQY 443

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A  +     ++ L  
Sbjct: 444 CQGWLFAKAMPAREFMQWLAN 464


>gi|167551715|ref|ZP_02345468.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205323420|gb|EDZ11259.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 516

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A++N E+ + Y PI+ L   +IVG EAL +W       +S   F+ +AE+  + +
Sbjct: 273 HRLQDAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLTE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +++ +  D+ SW          I IN+ + DL    L   +  L++++  SPS+I
Sbjct: 333 PLTRLIIDTVFEDMGSWLKSHPEQ--HISINLEASDLASETLPRLLSTLLNRSQISPSQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R  G S+ +DDFGT  S LSYL  +  D +K + S +
Sbjct: 391 ALELTEREF-ADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    + PL   +
Sbjct: 450 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETTRQEQWLRQHGVHYGQGWLYSKPLPATA 507

Query: 949 ILKLLKERF 957
            +   ++R 
Sbjct: 508 FILWAEQRL 516


>gi|15830526|ref|NP_309299.1| rtn-like protein [Escherichia coli O157:H7 str. Sakai]
 gi|13360732|dbj|BAB34695.1| Rtn-like protein [Escherichia coli O157:H7 str. Sakai]
          Length = 510

 Score =  252 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 250 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 309

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 310 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 366

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L  
Sbjct: 367 VLHI--KNAISDKFNIVLEITERNLVEDTDHALQKINELRSHGCEFAVDDFGTGYCSLGL 424

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 425 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTSHQAEYLIHN 484

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 485 NVTLVQGYLYAKPMKATEFYQWYVNR 510


>gi|259910133|ref|YP_002650489.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Erwinia
           pyrifoliae Ep1/96]
 gi|224965755|emb|CAX57287.1| cyclic diguanylate phosphodiesterase (EAL) domain protein [Erwinia
           pyrifoliae Ep1/96]
 gi|283480233|emb|CAY76149.1| Uncharacterized protein yjcC [Erwinia pyrifoliae DSM 12163]
          Length = 517

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 7/251 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++   +   E  + Y P+  L   ++ G+E L++W       +    F+  AE   MI +
Sbjct: 270 EIRRGMALGEFSVHYQPVCNLESGQLAGVECLMRWQRSDGSWVRPDIFVSAAENEGMIVS 329

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK-TLYSPSRI 828
           +   +L+ I +D  SW+         I +N+A+  L  ++    ++          P+  
Sbjct: 330 LTRHLLQLIEKDCASWQ---VPVGFHIGVNVAADHLQHDDFVNDIRKFSQGIAHLQPT-F 385

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   E+    L  LR  GI + +DDFGT    LSYL   P D +K +   +
Sbjct: 386 TLELTERSLISEGEQVAHKLAELRSEGIRVAIDDFGTGHCSLSYLQTFPLDYLKIDKGFV 445

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +L  II +A  +   ++A+ +   + ++ L   G  ++Q  + A P+  
Sbjct: 446 KAIESADGETPVLDIIIQLAHKLALQVVAEGVETPLQLEYLRNHGVVFMQGYYYARPMSS 505

Query: 947 NSILKLLKERF 957
            ++++ ++++ 
Sbjct: 506 AALMQWIEQQN 516


>gi|167551858|ref|ZP_02345611.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205323410|gb|EDZ11249.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 516

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 504


>gi|213025016|ref|ZP_03339463.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 350

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I+  
Sbjct: 72  FYRRWYLKRLSLAREISRGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFITPD 131

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   + ++
Sbjct: 132 IFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQDIE 188

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSYL  
Sbjct: 189 AL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSYLQQ 246

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   G  
Sbjct: 247 LPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSHGVG 306

Query: 934 YIQDSHVASPLGFNSILKLL----KERFPLVK 961
           ++Q    A P+G N  +  L    + +  L+K
Sbjct: 307 FVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 338


>gi|219668141|ref|YP_002458576.1| PTS system, lactose/cellobiose family IIC subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|219538401|gb|ACL20140.1| PTS system, lactose/cellobiose family IIC subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 718

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 4/276 (1%)

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             ++     H    R     S    + EDL   +E  +L L Y P +     ++   EAL
Sbjct: 442 KKSERSNKRHSLLERQDMLGSLAKALAEDLKYDIETKKLTLFYQPQVDYE-GKVFCAEAL 500

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+H  +G I     + +AEE  +I  + L ++++    I           + + +NI 
Sbjct: 501 LRWNHVHYGTIYPPLVIALAEEYQLIDELGLEIIDQACSTIKIM-AALGFTEMAVSVNIT 559

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L + +    ++ LI K   SP  +K+  +E V + N +  +  L  L+++GI L +D
Sbjct: 560 ASQLENQDFPGKLRQLIEKHQISPKALKIEITEQVALENNKWIKDTLNALKEMGIELEMD 619

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S L YL    FDTVK +GSL+   +       I+ SII +++++   ++A+ + 
Sbjct: 620 DFGMGHSSLMYLKEYNFDTVKLDGSLVREISTNMNCRDIISSIIYLSRSMNYAVLAEFVE 679

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E   + L  +GCD  Q    +  +    +L  ++ 
Sbjct: 680 TEEQRQILHELGCDLYQGYLYSPAIPLADLLVYIRR 715


>gi|260599539|ref|YP_003212110.1| hypothetical protein CTU_37470 [Cronobacter turicensis z3032]
 gi|260218716|emb|CBA34064.1| Uncharacterized protein yjcC [Cronobacter turicensis z3032]
          Length = 536

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A++   L L Y PI+ +     VG EAL++W       +S +EF+ +AE+  MI 
Sbjct: 272 RQLQRALQKRALRLHYQPIMDIKHGMCVGAEALLRWPGYNGQVMSPAEFIPLAEKTGMIA 331

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++E +  D+  +      P I+I IN+++ D   + L   ++   S+      +I
Sbjct: 332 QVTDYVVEELFNDLGHFLAT--HPQIYISINLSASDFHSSRLIALIEGKNSQHGVRAQQI 389

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  R+  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 390 KIEVTERGFI-DVPRTTPVIQAFRQSGFEIAIDDFGTGYSNLHNLYSLNVDILKIDKSFI 448

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T    +  I   II MA+++   IIA+ +     +  L + G  Y Q  H +  L  
Sbjct: 449 DTLTTNSTSHLIAEHIIDMAQSLRLKIIAEGVETAEQVGWLLKRGVQYCQGWHFSKALPR 508

Query: 947 NSILKLLKE 955
              +  L++
Sbjct: 509 QEFVAWLQQ 517


>gi|308187094|ref|YP_003931225.1| hypothetical protein Pvag_1588 [Pantoea vagans C9-1]
 gi|308057604|gb|ADO09776.1| Uncharacterized protein yoaD [Pantoea vagans C9-1]
          Length = 520

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 114/271 (42%), Gaps = 10/271 (3%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           + +    ++R+ +   +   +   E  +   P+I     E  G+E L++W + + G I+ 
Sbjct: 257 YIIWLATANRMSLSWQISYGITAREFMVYCQPLINSKSGECDGIELLLRWHNARQGWIAP 316

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +IK +  F+L  + R +    D    P   I IN+A+    D  + + +
Sbjct: 317 DVFIPLAERQNLIKPLTRFVLNEVVRKLPQLPD---DPAFHIAINVAATHFRDRAILDDL 373

Query: 815 QALIS-KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           Q L    +     ++ +  +E   +   ++   ++ +L  IG+ L +DDFGT  S LSYL
Sbjct: 374 QNLWWPASPVP--QLVVELTERDALPVVDQ--SVIAQLHDIGVRLAIDDFGTGHSSLSYL 429

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +               +   +I +A+ +  +++A+ +        L   G
Sbjct: 430 KDLQPDVLKIDKIFTAAIGTDAINATVTDMVISLAQRLNISLVAEGVETAEQADYLRERG 489

Query: 932 CDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            D++Q  + A P+        L       + 
Sbjct: 490 VDHLQGYYFARPMSLEDFPAWLTLHQADARR 520


>gi|218135001|ref|ZP_03463805.1| hypothetical protein BACPEC_02906 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990386|gb|EEC56397.1| hypothetical protein BACPEC_02906 [Bacteroides pectinophilus ATCC
           43243]
          Length = 533

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 177/479 (36%), Gaps = 24/479 (5%)

Query: 486 RAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQ 545
           R+       +      +       +  +  ++ I      +         D  +G+ N  
Sbjct: 67  RSKAITIWMIFWIASAVVQFFHREILIVSFSSCIGILILFIMLETPLTNIDRTSGLFNYN 126

Query: 546 SFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKF 605
           + +  +         D     +V+ + ++ ++     L  +V  D+  S+ R   ++   
Sbjct: 127 ALVQYMQQY----YNDGRQFASVVFVRLNSFQN---NLTPSVARDINYSIVRFFSDI--P 177

Query: 606 PDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTS 665
             +  +   ++  ++    +++   +D    +++ I          +     I     T 
Sbjct: 178 GAVTFKSGEDKVTMMF---DDANAASDAFELVQEKIRTGWGTNSDIVIPAGIICIPDSTI 234

Query: 666 SKITSSEML--KNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
           +   +  +     A          G   V+   ++    D   I++ +  +++N  + + 
Sbjct: 235 AGNAAEMLYLTSYARQRNREFLENGLVFVDINVLN-EMKDAQRIEQLVKDSIDNDTIAVY 293

Query: 724 YHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDII 783
           Y PI           EAL++        +  ++F+ IAE+   I  +   + E + R I 
Sbjct: 294 YQPIYSTKTGRFSSAEALVRIKDEDGNILPPAKFIDIAEKNSSIIKLGELIFEHVCRFIK 353

Query: 784 SWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPER 843
               +      +I +N+++      +L E    ++ K   +P  I L  +ES  +G    
Sbjct: 354 KHDLRQYGID-YIEVNLSAVQCSYEQLAERYINILKKYDVAPDMINLEITESASIGARNA 412

Query: 844 SRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS-----LMTGSTEKRIAI 898
               +  L   G+  +LDDFGT  S L+Y+  +P D +KF+ S         +  K   I
Sbjct: 413 LINNMHALLDYGVHFSLDDFGTGQSNLNYIIDMPVDIIKFDRSMSMSYF---NNSKGKYI 469

Query: 899 LRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERF 957
           + + I M  +++  I+++ I      + +  +G  YIQ  + + PL     ++ LKE  
Sbjct: 470 MNASINMIHDLQLEIVSEGIETAEQFEAMNALGVSYIQGYYFSKPLCCRDFIEFLKEHN 528


>gi|315181945|gb|ADT88858.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii NCTC
           11218]
          Length = 315

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 130/312 (41%), Gaps = 6/312 (1%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASG 443
            + Q        ++      E+ + A+ G+G  +W+  +   R+     +   +LG    
Sbjct: 5   RITQLEQQVAQLTRDKQRLEEKLNAALDGTGLCLWEQHVPTGRLRIFNMEWGKMLGFQPN 64

Query: 444 SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM- 502
            +   +  W   +H +D D     L+  +  R    Q   R+   D    W+  R R + 
Sbjct: 65  ELEANVETWKSKLHPDDYDLAVGALEDHLQGRADTYQVVHRMLHKDGSHSWVSDRGRIVE 124

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
              +G  LR +G   DIT +K+  + +   A QD LT + NR++        ++ + +D 
Sbjct: 125 YAEDGSPLRIMGTHIDITNEKRYEQELSRLARQDPLTNLLNRKALHSEFNR-INHAKSDS 183

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                ++ IDID +K +ND LG   GD VLV +   + +      ++ARL G+ F ++  
Sbjct: 184 --LAAMVFIDIDNFKTVNDHLGHKAGDAVLVVVAEWLKQFAPPQSVIARLGGDEFVLLCE 241

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
            E  +  +      +   +A P+ L   +  +  SIG   +   +     + + A+ AMY
Sbjct: 242 QE-ETQALNTLTDQLLTQVADPVVLENGKAQIGLSIGVCEFAPGQHEFDTLYERADEAMY 300

Query: 683 HAKHRGGNHVES 694
             K  G N V  
Sbjct: 301 QVKRSGKNGVRW 312


>gi|320192469|gb|EFW67111.1| Rtn-like protein [Escherichia coli O157:H7 str. EC1212]
          Length = 504

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 244 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 303

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 304 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 360

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L  
Sbjct: 361 VLHI--KNAISDKFNIVLEITERNLVEDTDHALQKINELRSHGCEFAVDDFGTGYCSLGL 418

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 419 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTSHQAEYLIHN 478

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 479 NVTLVQGYLYAKPMKATEFYQWYVNR 504


>gi|238792380|ref|ZP_04636014.1| hypothetical protein yinte0001_13080 [Yersinia intermedia ATCC
           29909]
 gi|238728306|gb|EEQ19826.1| hypothetical protein yinte0001_13080 [Yersinia intermedia ATCC
           29909]
          Length = 490

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   ++  VG E L++W HP  G I  ++F+ +AE+   I  +
Sbjct: 245 LRQALENNEFVAYMQPIVSGKEQCWVGCEVLMRWQHPVNGLIQPNKFIPMAEDSEFIVPM 304

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  ++ I     +   I L
Sbjct: 305 TRAIMQQVSATFAPYVNQLP-EGFHFGFNISANHCRDLSLVDDCRSFIQAFGGNKINITL 363

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++   E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +  
Sbjct: 364 ELTERKLIVADEITDRLFAELHALGVFIAIDDFGTGHSSLTYLQNFKVDFLKIDQSFVGM 423

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  E  ++ L     DY+Q      P+  + 
Sbjct: 424 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENETQVRYLQAHNVDYLQGYMYGRPMPMSE 483

Query: 949 ILKLL 953
             K +
Sbjct: 484 FAKYM 488


>gi|311104430|ref|YP_003977283.1| EAL domain-containing protein 1 [Achromobacter xylosoxidans A8]
 gi|310759119|gb|ADP14568.1| EAL domain protein 1 [Achromobacter xylosoxidans A8]
          Length = 528

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 110/259 (42%), Gaps = 5/259 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ I  +L   +   E  + Y PII L     +G EAL++W       +    F+
Sbjct: 257 WLSRRRLSIAGELAAGIRRREFAVHYQPIIDLRTGRCIGAEALVRWTRRCGNTLRPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE+  ++  I   +   + RD+             I +N+++ DL D      +Q ++
Sbjct: 317 SIAEDNGLMTRITEEVFRLVIRDMEDL--LGEDRGAHISVNLSASDLKDGRALRVLQRML 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T   P +I L  +E   M + +++  ++ + R  G ++ +DDFGT  S LSYL  +P 
Sbjct: 375 EGTAIDPRQIWLEATERGFM-DVDKACSVIEQARAQGHAVAIDDFGTGYSSLSYLQRLPL 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           D++K + S +           +   II MAK++    +A+ I  +     L     D+ Q
Sbjct: 434 DSLKIDKSFVDTIGTDSATHKVTDHIIDMAKSLNLLTVAEGIERQEQEDHLKAREVDFGQ 493

Query: 937 DSHVASPLGFNSILKLLKE 955
                 P+     +   K+
Sbjct: 494 GWLYGKPMPAPEFIAYYKK 512


>gi|153833160|ref|ZP_01985827.1| FOG: EAL domain protein [Vibrio harveyi HY01]
 gi|148870590|gb|EDL69498.1| FOG: EAL domain protein [Vibrio harveyi HY01]
          Length = 661

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 155/433 (35%), Gaps = 36/433 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID-KYKKINDVLGIAVGDDVLVS 594
           D+ TG+ N     + +               TV+ ID++    K+N  LG      ++  
Sbjct: 252 DSFTGLYNLAQLKEDVAK---------QANATVIYIDLEPTLSKLNG-LGHQGRAQLMKQ 301

Query: 595 LTRRIGELLKFPDILARLSGNRFG----IILISENNSLKIADFAIAMRKSIAMPINLLER 650
           L++ +       + L R     F      I     +     +  IA+           ++
Sbjct: 302 LSQYLASN---TEHLKRAYLPPFASGLLCIAPRLPDMDAELETLIALLDRFY--FYFDDK 356

Query: 651 EITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKED 710
            I++       +      +   ++      +   +      V        + + +     
Sbjct: 357 AISLVKRTIQCASVYGDKSLDPLISK----LCEQQGHEHRCVNWITQDQEQKNTLDQLSF 412

Query: 711 LCLAVENSELYLVYHPIIR-LMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +      +E  L   P        +    E L++    K   +S  EF  +  E  +   
Sbjct: 413 IQQCFRKNEFELYCQPYRALSEANQAANFEILLRLRPSKDTLMSPGEFFPLINEFGLELE 472

Query: 770 INLFMLERIA----RDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSP 825
           ++ +++E         I  WR           IN+ +K L    L E +Q   +      
Sbjct: 473 LDNWVIEHTFLSLKAQIHDWRSVG-----RCSINLTAKALNSEGLAEQIQTKAALHEIPM 527

Query: 826 SRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNG 885
           +++    +ES  + N   +   L  LRK G ++ LDDFGT  +   YL  +P D +K +G
Sbjct: 528 NKLCFEITESDALCNEPIAIQNLNLLRKAGSTIALDDFGTGYASFDYLRRLPLDVLKVDG 587

Query: 886 SLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
           S +     +E    I+++I  +A+++    +A+ +  E  I+ L  +   + Q   V+ P
Sbjct: 588 SFVKDIVASENDRIIVQAISQVARSMNLVTVAEFVESEAHIETLRALNIQFAQGFGVSKP 647

Query: 944 LGFNSILKLLKER 956
           +  +  L +L  +
Sbjct: 648 IPLSEHLTMLSNK 660


>gi|260769414|ref|ZP_05878347.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii CIP
           102972]
 gi|260614752|gb|EEX39938.1| sensory box/GGDEF domain/EAL domain protein [Vibrio furnissii CIP
           102972]
          Length = 315

 Score =  252 bits (645), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 128/305 (41%), Gaps = 6/305 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIR 450
                ++      E+ + A+ G+G  +W+  +   R+     +   +LG     +   + 
Sbjct: 12  QVAQLTRDKQRLEEKLNAALDGTGLCLWEQHVPTGRLRIFNMEWGKMLGFQPNELEANVE 71

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDI 509
            W   +H +D D     L+  +  R    Q   R+   D    W+  R R +    +G  
Sbjct: 72  TWKSKLHPDDYDLAVGALEDHLQGRADTYQVVHRMLHKDGSHSWVSDRGRIVEYAEDGSP 131

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR +G   DIT +K+  + +   A QD LT + NR++        ++ + ++      ++
Sbjct: 132 LRIMGTHIDITNEKRYEQELSRLARQDPLTNLLNRKALHSEFNR-INHAKSES--LAAMV 188

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            IDID +K +ND LG   GD VLV +   + +      ++ARL G+ F ++   E  +  
Sbjct: 189 FIDIDNFKTVNDHLGHKAGDAVLVVVAEWLKQFAPPQSVIARLGGDEFVLLCEQE-ETQA 247

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           +      +   +A P+ L   +  +  SIG   +   +     + + A+ AMY  K  G 
Sbjct: 248 LNTLTDQLLTQVAEPVVLENGKAQIGLSIGVCEFAPGQHDFDTLYERADEAMYQVKRSGK 307

Query: 690 NHVES 694
           N V  
Sbjct: 308 NGVRW 312


>gi|123441871|ref|YP_001005854.1| hypothetical protein YE1560 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088832|emb|CAL11638.1| putative exported protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 509

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   ++  +G E L++W HP  G I  ++F+ +AE+  +I  +
Sbjct: 264 LKHALENNEFIPYLQPIVSGKEQCWIGCEVLMRWQHPGQGLIQPNQFIPMAEDSELIVPM 323

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 324 TRSIMQQVSAKFAPYVNQLP-EGFHFGFNISANHCRDLSLVDDCRNFIQAFGGNKINITL 382

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++     +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +  
Sbjct: 383 ELTERKLIVADATTDKLFAELHALGVFIAIDDFGTGHSSLTYLQKFKVDFLKIDQSFVGM 442

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  E  ++ L     DY+Q      P+  N 
Sbjct: 443 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENETQMRYLQAHKVDYLQGYMYGRPMPMNE 502

Query: 949 ILKLL 953
             K L
Sbjct: 503 FAKYL 507


>gi|89893766|ref|YP_517253.1| hypothetical protein DSY1020 [Desulfitobacterium hafniense Y51]
 gi|89333214|dbj|BAE82809.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 699

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/276 (25%), Positives = 127/276 (46%), Gaps = 4/276 (1%)

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEAL 741
             ++     H    R     S    + EDL   +E  +L L Y P +     ++   EAL
Sbjct: 423 KKSERSNKRHSLLERQDMLGSLAKALAEDLKYDIETKKLTLFYQPQVDYE-GKVFCAEAL 481

Query: 742 IQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIA 801
           ++W+H  +G I     + +AEE  +I  + L ++++    I           + + +NI 
Sbjct: 482 LRWNHVHYGTIYPPLVIALAEEYQLIDELGLEIIDQACSTIKIM-AALGFTEMAVSVNIT 540

Query: 802 SKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLD 861
           +  L + +    ++ LI K   SP  +K+  +E V + N +  +  L  L+++GI L +D
Sbjct: 541 ASQLENQDFSGKLRQLIEKHQISPKALKIEITEQVALENNKWIKDTLNALKEMGIELEMD 600

Query: 862 DFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIY 919
           DFG   S L YL    FDTVK +GSL+   +       I+ SII +++++   ++A+ + 
Sbjct: 601 DFGMGHSSLMYLKEYNFDTVKLDGSLVREISTNMNCRDIISSIIYLSRSMNYAVLAEFVE 660

Query: 920 GEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKE 955
            E   + L  +GCD  Q    +  +    +L  ++ 
Sbjct: 661 TEEQRQILHELGCDLYQGYLYSPAIPLADLLAYIRR 696


>gi|88858528|ref|ZP_01133170.1| putative orphan protein; putative EAL domain [Pseudoalteromonas
           tunicata D2]
 gi|88820145|gb|EAR29958.1| putative orphan protein; putative EAL domain [Pseudoalteromonas
           tunicata D2]
          Length = 629

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 167/415 (40%), Gaps = 29/415 (6%)

Query: 535 QDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVS 594
            D+ TG PN  +  + L        ++  L   + +I ++  + IN   G  +GD V+  
Sbjct: 221 TDSATGFPNHIALENEL-------RSNKQLHLVMAIIWVNDLEDINSFYGSPIGDRVMKR 273

Query: 595 LTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITV 654
           L  R+ EL +    + RLS N+  +I     +  ++          +  P+ L +  I V
Sbjct: 274 LMTRLAELSQNQYKIYRLSTNKIALIGNQLEHVDQLEALITQFN--LNTPV-LKDPFIYV 330

Query: 655 TASIGFASWTSSKITSSEMLKNAELAMYHAKHRG----GNHVESFRVSSFRSDRVMIKED 710
           T   G A     +     +++NA +A   AK              +V S     V I ++
Sbjct: 331 TLCSGIA-----QGNKELLVENAHIAAAQAKQSRDCIVRYSDSMHKVKSQYLHNVKIAKE 385

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A  N  L   + P++ L++ ++   E L +        +  ++F+ +     M   +
Sbjct: 386 VREAFSNQLLVPYFQPVMCLINNKVSQYECLARIKSFNNTILEPNDFLTVVNRSRMDGQL 445

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              M  + A      +       I   IN+ ++D+LD  L   ++  + +   +PS I  
Sbjct: 446 TRLMFSQCAELFRRTQ-------IHWSINLTAQDMLDPSLACYLEDELKRYP-NPSHITF 497

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
              E+  + N    +  +  +R  G+ + +DDFGT  S +S +  +  D +K +GSL+  
Sbjct: 498 ELLETEAIANFSEVKAFIDLVRAKGVKVIIDDFGTGYSNISNILKLNVDGIKLDGSLVKQ 557

Query: 891 STEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASP 943
                     +  I    K +   +IA+ +  ++ +  L + G   +Q  + A P
Sbjct: 558 IATDHDVFLFIEHIASFTKQVNLQLIAEAVENKMILDTLVKAGVRLVQGYYFAEP 612


>gi|332530041|ref|ZP_08405991.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
 gi|332040514|gb|EGI76890.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Hylemonella gracilis ATCC 19624]
          Length = 650

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 135/363 (37%), Gaps = 6/363 (1%)

Query: 339 LLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVIQHVLATGYFS 397
               A   + +     + +              + G V    +L    ++  +      +
Sbjct: 270 FRTMADYPLMVTVGTAFKSELAPSQARRHGYLWLAGGVSAGLMLFTVLLMLALSRQRAAA 329

Query: 398 QGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
           + + +           +   +         +        +LG     +    R       
Sbjct: 330 EALQTSEALFRATFHQAAMGIVHLSPEGRILLANEKFRAMLGYDMAEL--RERTIFEIGD 387

Query: 458 INDRDNFRTILDSFVGYRRGR--LQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
              +   R  L   +         + E      D    W+   +  + +  G   R + +
Sbjct: 388 PQRQLEARLYLRKRLSLDSADALPEMEKTYLRKDGAVLWVCEALGVVQDRQGRPERVVAV 447

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
             DIT +K     +  +A  D LTG+PNR  F DRL  +L+ +     L   V+ +D+D 
Sbjct: 448 VQDITARKALEARLSHDALHDTLTGLPNRMMFHDRLCQVLESARRRQGL-AAVLFLDLDG 506

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
           +K++ND LG A GD++L  +  R+ E ++  D +AR+ G+ FG++L S          A 
Sbjct: 507 FKEVNDTLGHAAGDELLKQVALRLEECMRAEDTVARIGGDEFGVVLASVAQEGDCEQVAT 566

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
            +  +++ P  L ++E+ ++AS+G A +     +   +L  A+  MY AKH G       
Sbjct: 567 KILDALSQPFMLGQQEVRISASVGGALFPLHGQSMDSLLARADTGMYAAKHEGKGRFCWE 626

Query: 696 RVS 698
              
Sbjct: 627 DKE 629


>gi|320659636|gb|EFX27199.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 504

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 244 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 303

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 304 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 360

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L  
Sbjct: 361 VLHI--KNAISDKFNIVLEITERNLVEDTDHALQKINELRSHGCEFAVDDFGTGYCSLGL 418

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 419 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTSHQAEYLIHN 478

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 479 NVTLVQGYLYAKPMKATEFYQWYVNR 504


>gi|167992177|ref|ZP_02573275.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263761|ref|ZP_03163835.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197242016|gb|EDY24636.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205329532|gb|EDZ16296.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|321225058|gb|EFX50119.1| Putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 516

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 235 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 294

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 295 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 351

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 352 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 409

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 410 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 469

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 470 GVGFVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 504


>gi|227871827|ref|ZP_03990229.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227842328|gb|EEJ52556.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 564

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 1/242 (0%)

Query: 707 IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCM 766
           I+  +  A+E   + +     IR + + + G EAL +W  P +G IS  EF+ + E+   
Sbjct: 15  IESHIEEAIEKEWIQVYLQTNIRGLSKRVCGAEALSRWIDPVYGMISPGEFIPVLEKKRK 74

Query: 767 IKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS 826
           I+ ++ +++E I R+ +  R +     + I +N +  D     L + M+ ++ K     +
Sbjct: 75  IQLLDRYVMETICRE-LGERRRRGQFIVPISMNFSRLDFDVPTLLQEMEEIMEKNSLPRN 133

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + +  +ES VM N    +  +  L  +G  + +DDFG+  S L+ L    FDT K +  
Sbjct: 134 YVHIEITESAVMENEAYMKDTVRELHTLGYKVWMDDFGSGYSSLNLLKEFEFDTFKIDMR 193

Query: 887 LMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
            ++   +K + I+ SI+ MAK I    +A+ +  E   + L   GC+ +Q  + A P   
Sbjct: 194 FLSDMGKKSLIIISSILYMAKEIGIHTVAEGVETEEQYRFLKVAGCERMQGYYFARPEPM 253

Query: 947 NS 948
             
Sbjct: 254 KE 255


>gi|310765719|gb|ADP10669.1| hypothetical protein EJP617_09880 [Erwinia sp. Ejp617]
          Length = 517

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 110/251 (43%), Gaps = 7/251 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           ++   +   E  + Y P+  L   ++ G+E L++W       +    F+  AE   MI +
Sbjct: 270 EIRRGMALGEFSVHYQPVCNLESGQLAGVECLMRWQRSDGSWVRPDIFVSAAENEGMIVS 329

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK-TLYSPSRI 828
           +   +L+ I +D  SW+         I +N+A+  L  ++    ++          P+  
Sbjct: 330 LTRHLLQLIEKDCASWQ---VPVGFHIGVNVAADHLQHDDFVNDIRKFSQGIAHLQPT-F 385

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++   E+    L  LR  GI + +DDFGT    LSYL   P D +K +   +
Sbjct: 386 TLELTERSLISEGEQVAHKLAELRSEGIRVAIDDFGTGHCSLSYLQTFPLDYLKIDKGFV 445

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      +L  II +A  +   ++A+ +   + ++ L   G  ++Q  + A P+  
Sbjct: 446 KAIESADGETPVLDIIIQLAHKLALQVVAEGVETPLQLEYLRNHGVVFMQGYYYARPMSS 505

Query: 947 NSILKLLKERF 957
            ++++ ++++ 
Sbjct: 506 AALMQWIEQQN 516


>gi|146310747|ref|YP_001175821.1| diguanylate phosphodiesterase [Enterobacter sp. 638]
 gi|145317623|gb|ABP59770.1| diguanylate phosphodiesterase [Enterobacter sp. 638]
          Length = 512

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 117/249 (46%), Gaps = 5/249 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
           +E L  A+  +E+   Y PI+   +  + G+E L +W HP+ G IS + F+ +AE+  +I
Sbjct: 250 EESLRRAIFRNEIVPFYQPIVNGKEGTLRGVEVLARWKHPQGGYISPASFIPVAEKTGLI 309

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPS- 826
             +   ++ +++  + +   +       + IN ++  +      E        +   P  
Sbjct: 310 VPLTQSLMAQVSAHMNAIASKLP-EGFHVGINFSASHIAAPSFVEECLKY-KDSFIRPDL 367

Query: 827 RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGS 886
            + +  +E   +   E     L  L + G ++ LDDFGT  S +SYL  +  D +K + S
Sbjct: 368 NLVIEVTEREPLDVDEHLVQTLNTLHENGFAIALDDFGTGYSGISYLYDLNIDYIKIDRS 427

Query: 887 LMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPL 944
            +    + E    IL S++ +A+ ++ +I+A+ +  +  ++ L R    ++Q  +   P+
Sbjct: 428 FVGRVNAHEDSTRILDSVLDLARKLKISIVAEGVETQEQLEYLNRNNIAFMQGFYFFKPV 487

Query: 945 GFNSILKLL 953
            F  ++ +L
Sbjct: 488 PFTELIMIL 496


>gi|16763723|ref|NP_459338.1| hypothetical protein STM0343 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16418843|gb|AAL19297.1| putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261245626|emb|CBG23422.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992035|gb|ACY86920.1| hypothetical protein STM14_0400 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156955|emb|CBW16438.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|323128656|gb|ADX16086.1| Putative diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987291|gb|AEF06274.1| hypothetical protein STMUK_0349 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 524

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 131/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 243 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 302

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   +
Sbjct: 303 TPDIFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 359

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 360 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 417

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 418 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 477

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 478 GVGFVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 512


>gi|46203103|ref|ZP_00052074.2| COG2199: FOG: GGDEF domain [Magnetospirillum magnetotacticum MS-1]
          Length = 463

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 148/369 (40%), Gaps = 5/369 (1%)

Query: 340 LIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQG 399
                +   +             +  I   A+  G   +V L+G  +I          Q 
Sbjct: 98  FPNGSVRGAVGVSVPMEPFLAVQNQSIRVQAISHGAFWLVGLLGIALIGRRSVRRLTEQA 157

Query: 400 IFSDGERQS-LAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
           +  +  R +      + +     D     +   P    + G     + G     +   H 
Sbjct: 158 VADEENRLAAHVFSNALEATIITDPKGRILRVNPMFTELTGYGEDEVLGRNPRVIRSNHH 217

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
           +    F   +   + YR GR Q E   R  D Q       I  + +  G I  +IGI  D
Sbjct: 218 D--AEFYAEIWQSI-YRDGRWQGEIWNRRKDGQVFVAWESIVAVHDDAGAIRYFIGIFRD 274

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           ITEQ ++   IL  A  D LT +PNR  F DRL   +  +   D L    + +D+D +KK
Sbjct: 275 ITEQVEAQRHILRLAHYDVLTDLPNRVLFQDRLERAVVHALRHDRLAAL-LFLDLDGFKK 333

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
           +ND +G   GDD+L  +  R+   ++  D +ARL G+ F +IL   +++   A  A  + 
Sbjct: 334 VNDTMGHRAGDDLLKEVANRLRTCVRMTDTIARLGGDEFTVILDEISSAGDAAVVADKIL 393

Query: 639 KSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVS 698
            S+  PI +  RE+ +  SIG + +  +  T   +LK+A+ AMY AK  G      +   
Sbjct: 394 ASLQAPITIDGREVFIGTSIGISLFPENGTTGDVLLKHADTAMYQAKAAGKGCFNFYSAE 453

Query: 699 SFRSDRVMI 707
             +     +
Sbjct: 454 MTKRQEHRL 462


>gi|313202318|ref|YP_004040976.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Methylovorus sp. MP688]
 gi|312441634|gb|ADQ85740.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylovorus sp. MP688]
          Length = 435

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 145/319 (45%), Gaps = 13/319 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +++VL    F + +  +  R  +A+    D V   D+            ++ G +  
Sbjct: 120 IQTVENVLQRSVFERFMQQEKVRAEIALNSISDAVICTDMQGQVNYLNIAAESLTGWSRQ 179

Query: 444 SMHG-------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             +G        + N +  +H  D++    +L   +      L  +  +   D     + 
Sbjct: 180 EANGLPIVKVFQLINGVTRLH--DQNPVHRVLTQDITQG---LNPDTILIRRDGSEVAIE 234

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             I P+ + +G +   + + +D++  +     +   A  D LT +PNR    DRL+  + 
Sbjct: 235 DSISPIHDGSGKLTGAVIVFHDVSAARAMASKMAHLAQHDYLTNLPNRMLLNDRLSQAIT 294

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
           L+      +  V+ +D+D +K+IND LG  VGD +L S+ +R+ EL++  D ++R  G+ 
Sbjct: 295 LAER-GTSQLAVLFMDLDNFKQINDTLGHVVGDAILQSVAKRLIELVRKSDTVSRQGGDE 353

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +++    +    A  A  + +++  P  +  +E+ +TASIG + +      +  ++ +
Sbjct: 354 FLMLVDESKHGEDAALIASKILRALEKPHAIGGKELHLTASIGISLYPHDGRDAETLINH 413

Query: 677 AELAMYHAKHRGGNHVESF 695
           A+ AMY AK +G N+ + F
Sbjct: 414 ADSAMYEAKKQGRNNFKFF 432


>gi|326318254|ref|YP_004235926.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375090|gb|ADX47359.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 410

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 4/251 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              L  A+    +   + P        + G+EAL +W+HP  G +   EF+ +AE   +I
Sbjct: 152 AAMLEQAIREGGITPHFQPKADTRTGMLRGVEALARWNHPVLGMVPPDEFIPLAESAGLI 211

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+ L M+ER      +W+ +     + + IN++ + L   ++   + A   +   +PS+
Sbjct: 212 HALTLSMMERSFLQCAAWQSRG--MRLTLSINLSPQLLALPDIVNEICARQLRYGLAPSQ 269

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E  ++     +   L RLR  G  L++DD+GT  S L  L  IPF  +K + S 
Sbjct: 270 LMLEVTEGSMVETSSAAHSALVRLRLKGFGLSIDDYGTGFSSLQQLSRIPFSELKIDRSF 329

Query: 888 MTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           + G+  ++    IL S + +A+ +  + +A+ +    D + L   GC   Q   +A  + 
Sbjct: 330 VHGAHRRKSLRVILESALDLARRLNLSTVAEGVEHLEDWRLLQDFGCTSAQGWLIAKAMP 389

Query: 946 FNSILKLLKER 956
              +    +  
Sbjct: 390 GEDLPTWNRTH 400


>gi|46202114|ref|ZP_00053736.2| COG2200: FOG: EAL domain [Magnetospirillum magnetotacticum MS-1]
          Length = 588

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/563 (15%), Positives = 189/563 (33%), Gaps = 38/563 (6%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
               G    G+    E        + D++ + D     +       +++G  +  +    
Sbjct: 19  RRRKGKGGSGLGQPQEAYVAFAFAAADLLMEADHSGRIIFAIGASMSLVGRPARLLA--S 76

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
                 I   D+   +  L       R R      V         + +   P  +  G +
Sbjct: 77  MTLPDLIRPEDQSRAKNALKRMSKGDRVRHVL-LHVHLPAGGSTPVALSGYPHPDHQGRL 135

Query: 510 LRYI---GIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRP 566
           L  +   G     T + K              TG+  R+ F      ++  SA D +   
Sbjct: 136 LLVLTHSGTLMSPTVRHKE-------------TGLLGREGFEALAGDLIKESAKDGDESY 182

Query: 567 TVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENN 626
            + ++D+ +  ++   +G     D +   T  + +        A L G+++G+I   E +
Sbjct: 183 RMTLLDLPELAELRSKVGAEATADFIARFTDYLKQCSVGGGAAADLGGSKYGLIHGPEVS 242

Query: 627 SLKIA-DFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAK 685
           + +I    +   ++ +  P+N     + +             I++ E        +    
Sbjct: 243 ASEIEGAISGLAQQVMGSPLNSGSTSVAI---------DGGGISAQEATSALIYTLNRFT 293

Query: 686 HRGGNHVESFRVSSFRSDRVMI--KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
                 +      +  +    +    ++   +   E  L + PI+ L    +   E L++
Sbjct: 294 TDSNATIHELSAMARPTLSQTVSKMREVKETIGKGEFQLYFQPIVDLWSNAVHHFECLVR 353

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
           +        S+  F   AE+  ++  ++L +  R    +         P +   +N++ +
Sbjct: 354 FGDSGNSPYSTVVF---AEDTGLVGELDLAICARAIAFMRE--GVGAEPSLRFAVNLSGR 408

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
            L    +   +  LI        R+    +ES  + +   +  ++  +R  G  + +DDF
Sbjct: 409 SLSSPSMAARLLQLIHGAADLRGRLLFELTESSAISDLVAANAVIQEIRGRGHPVGIDDF 468

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGE 921
           G   +   YL  +  D VK +GS +  +  K  +   LR+I  + + +    IA+ I  E
Sbjct: 469 GAGAAAFHYLRGLKVDHVKIDGSYVRDAAGKGESLPFLRAITQLCRELRVATIAEHIEDE 528

Query: 922 IDIKELTRMGCDYIQDSHVASPL 944
                L      Y Q  +   P+
Sbjct: 529 ATANLLRVYNVRYGQGYYFGKPM 551


>gi|291614684|ref|YP_003524841.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus
            ES-1]
 gi|291584796|gb|ADE12454.1| diguanylate cyclase with PAS/PAC sensor [Sideroxydans lithotrophicus
            ES-1]
          Length = 1080

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 16/339 (4%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            F    ++       Q +     R + A   + + +   D   + +        I G    
Sbjct: 752  FVFSHNITQRKQAEQAL-----RIAAAAFETHEAILITDAQVNIIRVNKAFTDITGYTPE 806

Query: 444  SMHGPIRNWLP-YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
               G    ++    H  DR+ +  +    +    G    E   R    + +   + I  +
Sbjct: 807  EAMGKNPRFMSSGRH--DREYYAAMWQQILE--TGTWAGEIWDRRKSGEIYPKWMNITVV 862

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             N  G+  +Y+ I +DITE+KK+ + I   AF D LT +PNR+ FL+R  T L  SA   
Sbjct: 863  KNDRGETTQYVSIFSDITERKKAEDEIRNLAFYDPLTLLPNRRLFLERFHTALAASARYG 922

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
            +   +++ +D+D++K +ND  G   GD +LV +  RI   ++  D +AR  G+ F ++L 
Sbjct: 923  DF-GSILFLDLDRFKLLNDKFGHDYGDLLLVEVASRIKACVREIDTVARFGGDEFVVLLE 981

Query: 623  SENNSLKIAD-----FAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            S ++  + A       A  +R +++ P  L E E   + SIG + +  +  +   +LK A
Sbjct: 982  SISSDREEAAHKSGVVAEKIRDALSRPYRLKELEYRCSPSIGISLYHGNDDSMDVLLKYA 1041

Query: 678  ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVE 716
            + AMY AK  G N+V  +           + E      E
Sbjct: 1042 DAAMYQAKDAGRNNVRFYDPEMQSHWESELMEQSHEGNE 1080



 Score = 58.4 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 399 GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHI 458
            + S   R  L +  + D  W  D              + G     + G   + L     
Sbjct: 646 KLLSVYRRYMLVLETAMDGFWMADANGFLEDANEAYVKMSGYTMKELVGMHISELEA--N 703

Query: 459 NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAND 518
              +  +  ++  +    GR   E R R  D +   + + +  +     +  ++   +++
Sbjct: 704 ESEEAVKAHMEKLMAQGYGRF--ETRHRRKDGRVIDVEVAVTFLV----ETGKFFVFSHN 757

Query: 519 ITEQKKSLEGILCNA 533
           IT++K++ + +   A
Sbjct: 758 ITQRKQAEQALRIAA 772



 Score = 53.4 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 18/151 (11%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
           +++     I         S+ +    E     +  S + +   D+  + +        +L
Sbjct: 511 ILVGLGLDISKQREDSRLSEAMLRRNEAL---MRNSMEGIHVMDVDGNLLEANEAFCNML 567

Query: 439 GLASGSMHGPIRNWLPYIHINDRDNFRTI--LDSFVGYRRGRLQ-YEFRVRAADNQFHWM 495
           G A   M         ++H+ D +   +   L S +  R G+ + +E   +  D     +
Sbjct: 568 GYAREEMM--------HLHVTDWNKQFSAGELRSRMQSRIGKSETFETVHQRKDGTLLDV 619

Query: 496 IIRIRPM-SNSNGDILRYIGIANDITEQKKS 525
            I    +  +  G        + DITE+KK 
Sbjct: 620 EICATGVEIDGKG---YMFASSRDITERKKL 647


>gi|251789257|ref|YP_003003978.1| diguanylate phosphodiesterase [Dickeya zeae Ech1591]
 gi|247537878|gb|ACT06499.1| diguanylate phosphodiesterase [Dickeya zeae Ech1591]
          Length = 501

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 115/250 (46%), Gaps = 5/250 (2%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           +  A+EN E+   Y P+I  +  EI G+E L +W HPK G IS   F+ + E+  +I  +
Sbjct: 253 IRRAIENQEVLPYYQPVISTVSREIYGVEVLARWHHPKSGFISPDIFIPLCEQSGLIIPM 312

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++  + RD+    +      + I INI+++    ++     Q  I+        + +
Sbjct: 313 TRSLMSSVVRDLTPHLNTLPD-NLHIAINISAQHCQSDDFITDCQNFIAAFGDKNVHLMI 371

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E   +     +     +L   G+ + LDDFGT  S   YL  +  + +K + S ++ 
Sbjct: 372 EITEREKVDITPETIGFFKKLSDAGVLIALDDFGTGYSNFDYLRKLHVNVIKIDQSFVSM 431

Query: 891 STEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             E       ++  +I +A+ ++   IA+ +  E   + L+R   +++Q    + PL F+
Sbjct: 432 IDENDPQSSTLVNCVIDLAQQMKLMTIAEGVETEFQTEFLSRKHINFMQGYFFSRPLPFD 491

Query: 948 SILK-LLKER 956
            + +  L +R
Sbjct: 492 ELAQTWLNKR 501


>gi|168747350|ref|ZP_02772372.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4113]
 gi|168754354|ref|ZP_02779361.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4401]
 gi|168781049|ref|ZP_02806056.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4076]
 gi|168799157|ref|ZP_02824164.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC508]
 gi|195935284|ref|ZP_03080666.1| rtn-like protein [Escherichia coli O157:H7 str. EC4024]
 gi|208808820|ref|ZP_03251157.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815769|ref|ZP_03256948.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4045]
 gi|208822084|ref|ZP_03262403.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4042]
 gi|209399126|ref|YP_002269753.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4115]
 gi|217328518|ref|ZP_03444600.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. TW14588]
 gi|261227121|ref|ZP_05941402.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255763|ref|ZP_05948296.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. FRIK966]
 gi|188018001|gb|EDU56123.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4113]
 gi|189001303|gb|EDU70289.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358182|gb|EDU76601.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4401]
 gi|189378355|gb|EDU96771.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC508]
 gi|208728621|gb|EDZ78222.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4206]
 gi|208732417|gb|EDZ81105.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4045]
 gi|208737569|gb|EDZ85252.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160526|gb|ACI37959.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. EC4115]
 gi|217318945|gb|EEC27371.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. TW14588]
 gi|320637457|gb|EFX07257.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H7 str. G5101]
 gi|320643018|gb|EFX12219.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320648476|gb|EFX17131.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O157:H- str. H 2687]
 gi|320653793|gb|EFX21867.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|326345576|gb|EGD69316.1| Rtn-like protein [Escherichia coli O157:H7 str. 1044]
          Length = 504

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 244 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 303

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 304 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 360

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L  
Sbjct: 361 VLHI--KNAISDKFNIVLEITERNLVEDTDHALQKINELRSHGCEFAVDDFGTGYCSLGL 418

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 419 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTSHQAEYLIHN 478

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 479 NVTLVQGYLYAKPMKATEFYQWYVNR 504


>gi|308231816|ref|ZP_07413873.2| hypothetical protein TMAG_03504 [Mycobacterium tuberculosis
           SUMu001]
 gi|308369776|ref|ZP_07419022.2| hypothetical protein TMBG_01187 [Mycobacterium tuberculosis
           SUMu002]
 gi|308370698|ref|ZP_07422408.2| hypothetical protein TMCG_00992 [Mycobacterium tuberculosis
           SUMu003]
 gi|308371944|ref|ZP_07426769.2| hypothetical protein TMDG_01239 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373118|ref|ZP_07431078.2| hypothetical protein TMEG_01259 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374291|ref|ZP_07435481.2| hypothetical protein TMFG_02551 [Mycobacterium tuberculosis
           SUMu006]
 gi|308375439|ref|ZP_07443920.2| hypothetical protein TMGG_01925 [Mycobacterium tuberculosis
           SUMu007]
 gi|308376700|ref|ZP_07439727.2| hypothetical protein TMHG_00544 [Mycobacterium tuberculosis
           SUMu008]
 gi|308377701|ref|ZP_07480111.2| hypothetical protein TMIG_03037 [Mycobacterium tuberculosis
           SUMu009]
 gi|308378916|ref|ZP_07484304.2| hypothetical protein TMJG_03745 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380052|ref|ZP_07488525.2| hypothetical protein TMKG_01860 [Mycobacterium tuberculosis
           SUMu011]
 gi|308399412|ref|ZP_07493033.2| hypothetical protein TMLG_03449 [Mycobacterium tuberculosis
           SUMu012]
 gi|308215964|gb|EFO75363.1| hypothetical protein TMAG_03504 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326514|gb|EFP15365.1| hypothetical protein TMBG_01187 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331156|gb|EFP20007.1| hypothetical protein TMCG_00992 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334996|gb|EFP23847.1| hypothetical protein TMDG_01239 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338803|gb|EFP27654.1| hypothetical protein TMEG_01259 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342442|gb|EFP31293.1| hypothetical protein TMFG_02551 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346356|gb|EFP35207.1| hypothetical protein TMGG_01925 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350278|gb|EFP39129.1| hypothetical protein TMHG_00544 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354927|gb|EFP43778.1| hypothetical protein TMIG_03037 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358871|gb|EFP47722.1| hypothetical protein TMJG_03745 [Mycobacterium tuberculosis
           SUMu010]
 gi|308362808|gb|EFP51659.1| hypothetical protein TMKG_01860 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366455|gb|EFP55306.1| hypothetical protein TMLG_03449 [Mycobacterium tuberculosis
           SUMu012]
          Length = 288

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 127/285 (44%), Gaps = 9/285 (3%)

Query: 669 TSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPII 728
              EM + A  A   A     +           + R  +   + +A++  E +LVY PII
Sbjct: 3   DYEEMFRGAMQA--RAMVANPDQWAD-SDRDQVNTRHYLSTSMRVALDRGEFFLVYQPII 59

Query: 729 RLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQ 788
           RL D  I+G EAL++W+HP  G +    F+  AE   ++  +  F+LE+  R + SWRD 
Sbjct: 60  RLADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPLTAFVLEQACRHVRSWRDH 119

Query: 789 ANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLL 848
           +  P  F+ +N+++  + D      ++ ++ +T      ++L  +E   +   E++   L
Sbjct: 120 STDPQPFVSVNVSASTICDPGFLVLVEGVLGETGLPAHALQLELAEDARLSRDEKAVTRL 179

Query: 849 GRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK------RIAILRSI 902
             L  +G+ + +DDFG   S L+YL  +P D VK  G  +               I R++
Sbjct: 180 QELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIECLDGDIQARLANEQITRAM 239

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
           I +   +  T+ AK +        L   GC   Q  H A  L  +
Sbjct: 240 IDLGDKLGITVTAKLVETPSQAARLRAFGCKAAQGWHFAKALPVD 284


>gi|256372297|ref|YP_003110121.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
            DSM 10331]
 gi|256008881|gb|ACU54448.1| diguanylate cyclase/phosphodiesterase [Acidimicrobium ferrooxidans
            DSM 10331]
          Length = 1167

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 186/444 (41%), Gaps = 31/444 (6%)

Query: 516  ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
              D  +++++L+     A  D LTG+ NR +F  RL  ++            V  +D+D 
Sbjct: 652  LRDRLDRERALQQR--LAQTDTLTGLMNRSAFEVRLNALVAQ------EPVAVGFLDLDG 703

Query: 576  YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
            +K +ND LG   GD++L +L R +  L      +ARL G+ F + L+             
Sbjct: 704  FKDVNDSLGHTKGDELLAALGRALARLAAPDVFVARLGGDEFAVALVG-----SARHRLD 758

Query: 636  AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESF 695
             + + I++ +  + +   +T SIG+A       T+ E+L  A+ A+Y AK  G      +
Sbjct: 759  QIAERISVMVRTIGQRWRITGSIGWALAPDDVRTTRELLMAADEALYAAKAAGKARWVRY 818

Query: 696  RVSSFRSDRVMIKED--LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
                 +  +   +    L  A+ +        P +      +VG+E L++W         
Sbjct: 819  GGDVSQRVQRRRRVRDGLVDALASGAATFACQPKVDARLGTVVGVELLLRW--------P 870

Query: 754  SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
                + +  EL     +   +     R    + ++ N  P  + +NI     L  E  + 
Sbjct: 871  EIATVDVVAELRAAPELARSLGRAALRTGADYSERLNGVP--VAVNITPSHFLHGEFLDD 928

Query: 814  MQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
            +  L+ +     S + +  +E V + + E +   +  +R   I+++LDDFGT  S LS L
Sbjct: 929  LDELVPR----GSLLVVEITEDVALEDLELAAAQVAAVRARRIAVSLDDFGTAASSLSAL 984

Query: 874  GYIPFDTVKFNGSLMTGSTEKRIAI-LRSIIPMAKNIE-TTIIAKDIYGEIDIKELTRMG 931
              +  D VK + S +  + E   A  + + +   +     +++A+ +  + +I    R+G
Sbjct: 985  ARLQVDEVKVDRSFVQRAREDHHAFSVLAALATLEETGSVSVVAEGVEVDEEIGLWLRLG 1044

Query: 932  CDYIQDSHVASPLGFNSILKLLKE 955
               +Q    A P    S+  L++ 
Sbjct: 1045 GSCVQGYRYARPGSLASVQALIQS 1068


>gi|118590159|ref|ZP_01547562.1| hypothetical protein SIAM614_11613 [Stappia aggregata IAM 12614]
 gi|118437131|gb|EAV43769.1| hypothetical protein SIAM614_11613 [Stappia aggregata IAM 12614]
          Length = 548

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 115/248 (46%), Gaps = 4/248 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +   A+ N E    Y P++ +    + G E L++W  P    +S  +FM  AE    I  
Sbjct: 270 EFIAAIRNGEFIPYYQPVMDIESGRLRGCEILMRWRRPNGMIVSPGQFMAYAENNGHIFD 329

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   ++   + +I       + P + + IN+ +   LD E+   ++++  K+  S  +I 
Sbjct: 330 MTRHIMRVSSEEIGDLY--GDNPDLKLSINLFAGHFLDREVISDIRSIFEKSRISFQQIV 387

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           +  +E   + + E +R ++  L+ +G+ + LDD GT    ++YL  +  D +K +   + 
Sbjct: 388 VEVTERHPLEDMELARKIIAELQALGVRVALDDVGTGHGGMAYLQKLGVDIIKIDKMFID 447

Query: 890 --GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
             GS +    I+ S++ +A N+   IIA+ +  E  I  L  +G    Q  + A+P+  +
Sbjct: 448 TIGSDDNSTTIVDSMVELADNLGMGIIAEGVEMEEQIDRLLELGVTAAQGYYFAAPMPAD 507

Query: 948 SILKLLKE 955
             +   + 
Sbjct: 508 EFIAFAER 515


>gi|296454655|ref|YP_003661798.1| diguanylate cyclase/phosphodiesterase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296184086|gb|ADH00968.1| diguanylate cyclase/phosphodiesterase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 725

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           ED+  A+EN E      P        IVG EAL +W+HPK+G IS   F+ + E    I 
Sbjct: 23  EDIDHALENGEFCCYLQPKCNAETGTIVGAEALARWNHPKYGVISPEWFVPVLERAGRIC 82

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            ++LF+   +A  +  W  +     + + +N++  D+   ++ + +  L+++       +
Sbjct: 83  HVDLFVWRFVAEMLGRWEREGRNL-VPVSVNVSMMDINQMDVADVLGGLLNEYNVDARLL 141

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES V  N    +  + +L   GI + +DDFG+  S L+ L  I  D +K +   +
Sbjct: 142 RVEITESAVAKNLSMVKDTICKLHARGIVVLMDDFGSAYSSLNMLKDINVDVIKLDAKFI 201

Query: 889 TGSTEKR---IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
             S E     + I++S+I MAK +   +IA+    +  +  L  +GC YIQ  +   PL 
Sbjct: 202 ELSDENAGKGMKIIQSMIVMAKKLHLMVIAEGAQTKEQVDWLEAVGCGYIQGYYFYPPLP 261

Query: 946 FNSILKLLKER 956
              +  +L ER
Sbjct: 262 VKRMETMLAER 272



 Score =  104 bits (260), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 97/282 (34%), Gaps = 38/282 (13%)

Query: 454 PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN--------- 504
             +H +D   F   L+  +   R RL   +R       +   ++    +           
Sbjct: 357 RVVHPDDVGRFLADLN--LSSIRERL---YRQETMLGIYRSEVLAKTGVVTFAVIPTHAC 411

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNA---FQDNLTGIPNRQSFLDRLTTILDLSATD 561
           S  +    + +  ++            +A    +D+LTG+ NR ++ D L          
Sbjct: 412 SPSNPWAVVLVGRNL----PIGLLACGDADNYRRDSLTGLLNRNAYDDDLE----CIQAT 463

Query: 562 DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIIL 621
            +   TV+ +D++   +IN+ LG A GD VL  L   +       D + R+ G+ F II 
Sbjct: 464 HDKPLTVVYVDMNGLHEINNHLGHAKGDSVLRCLADAMRACF-GDDRIYRIGGDEFVIIS 522

Query: 622 ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAM 681
            +   S  +   A   R  +    ++         S+G A          +++  AE+ M
Sbjct: 523 CNHTVSQSMRRMARMRRDFLKGDWDI---------SVGMAES-DDGGDLPDLINQAEIRM 572

Query: 682 YHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLV 723
              K +   +V        R     ++  L    +   L   
Sbjct: 573 RQDKKQ--YYVNGGGKCQLRMLNKQLENILVRNEDARILLEH 612


>gi|295095426|emb|CBK84516.1| Predicted signal transduction protein containing sensor and EAL
           domains [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 521

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 117/253 (46%), Gaps = 7/253 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+   +L + Y PII + + + VG EAL++W       +S +EF+ +AE+  MI+
Sbjct: 273 RLLHRALNKRQLCVHYQPIIDIKNNQCVGAEALLRWPGFNGQVMSPAEFIPLAEKEGMIE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I  +++E +  D+  +      P +++ IN+++ D   + L   +            +I
Sbjct: 333 RITDYVVEEVFSDLGHFLAA--HPDLYVSINLSASDFHSSRLIALISDKARFYSVRAQQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 391 KIEVTERGFI-DVPKTTPVIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDILKIDKSFI 449

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T    +  I   II MA+++    IA+ +     +  L + G  Y Q  H A  +  
Sbjct: 450 DTLTTNSTSHLIAEHIIEMAQSLRLKTIAEGVETGEQVSWLLKRGVQYCQGWHFAKAMPP 509

Query: 947 NSILKLLKERFPL 959
            + +    ++ PL
Sbjct: 510 QAFMAW--QQQPL 520


>gi|62178956|ref|YP_215373.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62126589|gb|AAX64292.1| putative Diguanylate cyclase/phosphodiesterase domain 1 [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713412|gb|EFZ04983.1| diguanylate cyclase/phosphodiesterase domain-containing protein
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 524

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 130/275 (47%), Gaps = 11/275 (4%)

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                  +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I
Sbjct: 243 MMLFYRRWYLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFI 302

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           +   F+  AE   MI  ++  + E I  D+I+W         +I +NI+   L+D+   +
Sbjct: 303 TPDIFITAAENEGMIIPLSRHLFELIVHDVINW---TVPDDFYISVNISPAHLMDDGFIQ 359

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSY
Sbjct: 360 DIEAL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSY 417

Query: 873 LGYIPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   
Sbjct: 418 LQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSH 477

Query: 931 GCDYIQDSHVASPLGFNSILKLL----KERFPLVK 961
           G  ++Q    A P+G N  +  L    + +  L+K
Sbjct: 478 GVGFVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 512


>gi|121637288|ref|YP_977511.1| hypothetical protein BCG_1419c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989762|ref|YP_002644449.1| hypothetical protein JTY_1393 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|121492935|emb|CAL71406.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772875|dbj|BAH25681.1| hypothetical protein JTY_1393 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 307

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 9/296 (3%)

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVEN 717
              A   +  I   EM + A  A   A     +           + R  +   + +A++ 
Sbjct: 11  FACALRPTKLIDYEEMFRGAMQA--RAMVANPDQWAD-SDRDQVNTRHYLSTSMRVALDR 67

Query: 718 SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLER 777
            E +LVY PIIRL D  I+G EAL++W+HP  G +    F+  AE   ++  +  F+LE+
Sbjct: 68  GEFFLVYQPIIRLADNRIIGAEALLRWEHPTLGTLLPGRFIDRAENNGLMVPLTAFVLEQ 127

Query: 778 IARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVV 837
             R + SWRD +  P  F+ +N+++  + D      ++ ++ +T      ++L  +E   
Sbjct: 128 ACRHVRSWRDHSTDPQPFVSVNVSASTICDPGFLVLVEGVLGETGLPAHALQLELAEDAR 187

Query: 838 MGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEK--- 894
           +   E++   L  L  +G+ + +DDFG   S L+YL  +P D VK  G  +         
Sbjct: 188 LSRDEKAVTRLQELSALGVGIAIDDFGIGFSSLAYLPRLPVDVVKLGGKFIECLDGDIQA 247

Query: 895 ---RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                 I R++I +   +  T+ AK +        L   GC   Q  H A  L  +
Sbjct: 248 RLANEQITRAMIDLGDKLGITVTAKLVESPSQAARLRAFGCKAAQGWHFAKALPVD 303


>gi|330900293|gb|EGH31712.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 213

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AE+  +I  I  ++L+   R +  W  Q       I +N+++     + L   +   +++
Sbjct: 1   AEKTGLIIQIGEWVLDEACRQMREWYTQ-GYSHWRIAVNLSALQFCHSGLVTAVADTLAR 59

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                + + L  +E+  M + + S  +L RL ++G+ L++DDFGT  S L YL  +P + 
Sbjct: 60  HQLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANE 119

Query: 881 VKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   +          AI+ +I+ + + +   I+A+ +   +  + LT +GC  +Q  
Sbjct: 120 IKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTHLGCHSLQGF 179

Query: 939 HVASPLGFNSILKLLK 954
            +  PL     L+ ++
Sbjct: 180 LLGYPLPAQQFLEEIR 195


>gi|256420362|ref|YP_003121015.1| hypothetical protein Cpin_1316 [Chitinophaga pinensis DSM 2588]
 gi|256035270|gb|ACU58814.1| Diverse 7TM receptor transmembrane region [Chitinophaga pinensis
           DSM 2588]
          Length = 708

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 127/398 (31%), Gaps = 6/398 (1%)

Query: 15  FLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAADIDGISRR 74
           F+ L L  +       A  PI   ++  +  +     IY ++     +   +        
Sbjct: 4   FIALWLLAILGYQQMQAATPIVYHNNMPLTRIGKNLEIYTDKTNALDINAVSKKTFSFPD 63

Query: 75  IEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPDLGSRRIISVTPSE 134
             V    I     W  F + N SD   E ++ V +  +     F          +     
Sbjct: 64  ENVPNLQITPHTHWVRFTVTNESD-LREIMLEVEYPTIDDITLFELRPDGTYDSTRLGEF 122

Query: 135 GFSLDRIPNSDSDVFRITINPGAVVTFIMEIST--PNLPQIYLWEPNFYKDTVNSFTLYR 192
               +R  +  + +F + I       + + +         + +   +   +  +   L  
Sbjct: 123 TSYHNRPVDHQNYIFPLYIATHTTRQYYLRVIAGEQVQLPMSIGTRDQVSEKNDYRDLIF 182

Query: 193 GIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFLSKLVNLPSGEL-L 251
           G+ IGV   ++ +    Y+  + +  +   +    V    +   G+  + +   S  +  
Sbjct: 183 GLYIGVMLAMSFYNLFLYLSTKDNSYLTYVSYNVFVALTQATLQGYSFRFLYPDSPWMAQ 242

Query: 252 IWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIA 311
                  I    + ++F+  +L   +++ K   +    +      F  +     + A I 
Sbjct: 243 HATVLVPILNGLTALVFIQQFLLTKQFYKKGHRLINILLILYMGCFIPALLNKYIIAQIW 302

Query: 312 -RITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDND-IIQP 369
            ++ + +  +   Y  +   MKGY  A   + AW +  +  +   +     L  +     
Sbjct: 303 VQMVVGAAAVSVFYISLRMSMKGYSSARFFLLAWSIFLLSVLVFVLRNANVLPYNEFTYY 362

Query: 370 ALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQ 407
           AL  G  +  +L+ F +   +      +     + ER 
Sbjct: 363 ALQIGSGMEALLLSFALAYKINLFKAEALHASQENERL 400


>gi|161620414|ref|YP_001594300.1| EAL [Brucella canis ATCC 23365]
 gi|254702743|ref|ZP_05164571.1| EAL [Brucella suis bv. 3 str. 686]
 gi|260568350|ref|ZP_05838819.1| EAL domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261753336|ref|ZP_05997045.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|161337225|gb|ABX63529.1| EAL [Brucella canis ATCC 23365]
 gi|260155015|gb|EEW90096.1| EAL domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261743089|gb|EEY31015.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 530

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/260 (27%), Positives = 119/260 (45%), Gaps = 5/260 (1%)

Query: 699 SFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFM 758
                R+ ++ +L +A+   E  +VY P+I L     VG EAL++W  P    +    F+
Sbjct: 257 WLSRRRLSLRGELAIAIRRREFTVVYQPLIELKTGICVGAEALVRWRRPDGAMVMPDLFI 316

Query: 759 LIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALI 818
            IAE   MI  I   ++    RD+           + + IN+A  DL    +   +Q  I
Sbjct: 317 PIAENSKMISQITEQVVANTVRDLGDVLAA--DEALHVAINMADDDLAQGRILTVVQRAI 374

Query: 819 SKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPF 878
             T     +I L  +E   M +P+ +R ++ + R++G S+ +DDFGT  S L YL  +P 
Sbjct: 375 RGTGIRTEQIWLEATERGFM-DPKSTRTIIEKARELGHSIAIDDFGTGYSSLHYLQELPV 433

Query: 879 DTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQ 936
           DT+K + S ++          I   II MAK+++  I+A+ I  +     L   G  + Q
Sbjct: 434 DTLKIDKSFISTLGTDSATSPIAAHIIAMAKSLDLIIVAEGIERQEQADYLIAHGVQFGQ 493

Query: 937 DSHVASPLGFNSILKLLKER 956
               + PL     ++  K +
Sbjct: 494 GWLYSPPLPAQEFIEFYKAQ 513


>gi|156932338|ref|YP_001436254.1| hypothetical protein ESA_00113 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530592|gb|ABU75418.1| hypothetical protein ESA_00113 [Cronobacter sakazakii ATCC BAA-894]
          Length = 535

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+    L L Y PI+ +     VG EAL++W       +S +EF+ +AE+  MI 
Sbjct: 271 RQLQRALHKRALRLHYQPIMDIKHGMCVGAEALLRWPGYNGQVMSPAEFIPLAEKTGMIA 330

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++E +  D+  +      P I+I IN+++ D   + L   ++   ++      +I
Sbjct: 331 QVTDYVVEELFNDLGHFLAT--HPQIYISINLSASDFHSSRLIALIEGKNNQHGVRAQQI 388

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           K+  +E   + +  R+  ++   R+ G  + +DDFGT  S L  L  +  D +K + S +
Sbjct: 389 KIEVTERGFI-DVPRTTPVIQAFRQSGFEIAIDDFGTGYSNLHNLYSLNVDILKIDKSFI 447

Query: 889 TGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              T    +  I   II MA+++   IIA+ +     +  L + G  Y Q  H +  L  
Sbjct: 448 DTLTTNSTSHLIAEHIIDMAQSLRLKIIAEGVETAEQVGWLLKRGVQYCQGWHFSKALPR 507

Query: 947 NSILKLLKE 955
              +  L++
Sbjct: 508 QEFVAWLQQ 516


>gi|254733613|ref|ZP_05191331.1| sensory box/GGDEF family protein [Bacillus anthracis str. Western
           North America USA6153]
          Length = 385

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 152/340 (44%), Gaps = 8/340 (2%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLP 454
             +  +    +R         D V+  ++      +     ++    +        + L 
Sbjct: 43  EGASALSKSEQRYKSLFEDHPDAVFSLNMYGIFQQSNTACESLF--TAYYCEVESYSLLH 100

Query: 455 YIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIG 514
           +I   D D  +  L   +         E R +  +  ++++ I + P    N +++   G
Sbjct: 101 FIDPKDHDLLQKALQ--LTKEGSPQTLEVRTKEKEGYYYYLHITLIPTF-INKEVVGMFG 157

Query: 515 IANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDID 574
           IA DIT   +  + +   AF D LTG+PNR+ F   L  IL+ +    N    VM +D+D
Sbjct: 158 IARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASAN-DVAVMFLDLD 216

Query: 575 KYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFA 634
           ++KKIND LG  +GD +L+ + +R+   L+  D++AR  G+ F I+L    +    A  A
Sbjct: 217 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 276

Query: 635 IAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
             +   +  P  + + E+++T SIG A +       +E++KNA++AMY AK  G N    
Sbjct: 277 EQILNILNKPFFIKDEELSITPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFVF 336

Query: 695 FRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMD 732
           F      +      ++ +L  A++ +E +L Y P +    
Sbjct: 337 FSKEMSIAQNESNFLEGELSKALQQNEFFLEYQPQVGTKT 376


>gi|289826846|ref|ZP_06545756.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 359

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I+  
Sbjct: 81  FYRRWYLKRLSLAREISRGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFITPD 140

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   + ++
Sbjct: 141 IFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQDIE 197

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSYL  
Sbjct: 198 AL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSYLQQ 255

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   G  
Sbjct: 256 LPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSHGVG 315

Query: 934 YIQDSHVASPLGFNSILKLL----KERFPLVK 961
           ++Q    A P+G N  +  L    + +  L+K
Sbjct: 316 FVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 347


>gi|331014946|gb|EGH95002.1| sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 696

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/368 (26%), Positives = 175/368 (47%), Gaps = 9/368 (2%)

Query: 397 SQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYI 456
            +   +       AV  S +     +         P    I   +S  + G     L  +
Sbjct: 336 RRAATNALHLFQRAVEQSANAFLLVNCNGVVEYVNPSFTAITQYSSEEVSGNK---LSEL 392

Query: 457 HINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIA 516
              +  N   +  +         Q EF+ R  + + +W  + I  +   N ++  YIGI 
Sbjct: 393 PALENLNQLLLEANSSLTSSNSWQGEFKSRRKNLEPYWGQLSISKVYGDNRELTHYIGIY 452

Query: 517 NDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKY 576
            DIT+ K + + I   A+ DNLT + NR +F+  L       A D +   +++++DID +
Sbjct: 453 EDITQSKLAQQRIERLAYTDNLTNLGNRPAFIRNLDE---RFARDTDTPMSLLLVDIDNF 509

Query: 577 KKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIA 636
           K+IND LG   GD +L+SL RR+   L   D+LAR + N F ++L +          A  
Sbjct: 510 KRINDSLGHQTGDKLLISLARRLRNTLSPTDVLARFASNEFAVLLDN-TGQEAGQATASQ 568

Query: 637 MRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           +  ++  P+ +  + I+VT S+G A           ++KNA LA++ AK  G + V+ F 
Sbjct: 569 VLATLDKPMFVDNQLISVTGSVGLACAPLHGRDPQTLMKNAGLALHKAKANGKHQVQVFT 628

Query: 697 V--SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
              ++  S ++ ++ +L  A+  +EL + Y P + L+   ++G+EAL++W+HP+ G I  
Sbjct: 629 EALNAEASYKLFVENNLRRALTQNELEVFYQPKLCLLTGRLLGMEALLRWNHPEKGMIRP 688

Query: 755 SEFMLIAE 762
            +F+ +AE
Sbjct: 689 DQFISVAE 696


>gi|104779397|ref|YP_605895.1| signal transduction protein [Pseudomonas entomophila L48]
 gi|95108384|emb|CAK13078.1| putative signal transduction protein; EAL domain protein
           [Pseudomonas entomophila L48]
          Length = 542

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 119/256 (46%), Gaps = 5/256 (1%)

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             R  +  +L  A+   EL ++Y PI  L     VG EAL++W  P     S   F+ +A
Sbjct: 277 QQRRSMSSELQQALRRGELQVLYQPIFELDSRRCVGAEALVRWRRPDGSLTSPELFIPLA 336

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E    I+ I  F+L+R+   +           ++I +N+A+ D+++  +    Q L+++ 
Sbjct: 337 ENTGQIREITDFVLQRVLEQLGQLLRA--NSWLYISVNLAACDVMEPRIGRVAQRLLAQH 394

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             + S+I    +E  ++ +   +R  L  LR +G  + +DDFGT    L+YL  +P D +
Sbjct: 395 RVAASQIAFEVTERGLI-DVVVARDNLQTLRAVGHQVLIDDFGTGYCSLAYLQTLPVDCL 453

Query: 882 KFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + + +        +  +   II MA ++   +IA+ I  E   + L   G +Y Q   
Sbjct: 454 KIDKAFIDALGHDAASSGVAPHIIRMAHDLHLRVIAEGIESEDQAELLNSEGVNYGQGWL 513

Query: 940 VASPLGFNSILKLLKE 955
            A PL     ++L+  
Sbjct: 514 FAHPLNARQFVELITR 529


>gi|302671359|ref|YP_003831319.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395832|gb|ADL34737.1| EAL domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 651

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 165/423 (39%), Gaps = 14/423 (3%)

Query: 547 FLDRLTTILDLSATD--------DNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRR 598
           F+DR +     +A               T+  I ID+           +  ++L  +T  
Sbjct: 230 FVDRFSGAATRNALHFSILTNLLQKKEFTLYGIHIDRLSAAVGEKSPELSAELLSQMTDY 289

Query: 599 IGELLKFPDILARLSGNRFGIILISEN-NSLKIADFAIAMRKSIAMPINLLEREITVTAS 657
           +   L    I+     + F I+      +   I   +  +R+       + + E+    +
Sbjct: 290 LKG-LSPDGIVYYPYMDDFIILFPGVTADESIIEKTSDQVRRRFKDIWKVGDEELKFFET 348

Query: 658 IGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS-DRVMIKEDLCLAVE 716
               S+     +     +   +       +  + V    ++         +   +  A+E
Sbjct: 349 PYVLSFPEEIDSLERYQEVKVVLDKVLVKQARDIVHFSDINLKVIEHDKKVDSIVKHALE 408

Query: 717 NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLE 776
           +  L + Y PI   +  +    EAL++   P+ G IS + FM IAE    I  I+ F+L 
Sbjct: 409 DGLLEVYYQPIYSPVTGKFSSCEALLRLKDPQLGFISPAIFMPIAERNGTILEIDRFVLN 468

Query: 777 RIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESV 836
            +   I +   +         +N++  D +   L + +   + K     S I    +E+ 
Sbjct: 469 NVCDMIANADVRKYGLEYTE-VNLSVVDCIQTNLADNVMGTLDKYGVDTSEINFEITETY 527

Query: 837 VMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG--STEK 894
             G        +  LR  GI+ ++DDFGT  S +  +  +P +  K + S++     +EK
Sbjct: 528 EQGITAVMDENITGLRDKGITFSMDDFGTGYSNIVRIATMPVEIFKLDKSIIQSAFDSEK 587

Query: 895 RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
              ++ ++I + K++   I+A+ +      ++L ++GCD+IQ    A P+  +  ++ LK
Sbjct: 588 SYMVMLNLIRIIKSLGKEIVAEGVETGEQARQLIKLGCDHIQGFFYARPMPKDQFVQFLK 647

Query: 955 ERF 957
           E  
Sbjct: 648 EHN 650


>gi|330009075|ref|ZP_08306367.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
 gi|328534986|gb|EGF61515.1| cyclic diguanylate phosphodiesterase domain protein [Klebsiella sp.
           MS 92-3]
          Length = 534

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 5/261 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            S  R      +  L  A+   +L L Y PII + +   VG EAL++W       ++ +E
Sbjct: 261 WSRTRRQYHSPRNMLQRALSCRQLRLHYQPIIDIKNNRCVGAEALLRWPGFDGPVMNPAE 320

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  +  ++++ +  ++  +      P ++I IN+++ D     L   +  
Sbjct: 321 FIPLAENEGMIAQVTDYVVDELFYEMGEFLAS--HPQLYIAINLSASDFHSARLISQISE 378

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                     +IK+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +
Sbjct: 379 KAHSYAVCIGQIKIEVTERGFI-DVPKTTPVIQAFREAGYEIAIDDFGTGYSNLHNLHAL 437

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + + +   T    +  I   II MA+ +    IA+ +     +  L + G  Y
Sbjct: 438 NVDILKIDKTFVDTLTTNNTSHLIAEHIIEMARGLRLKTIAEGVETPEQVSWLYKRGVQY 497

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A  +     ++ L  
Sbjct: 498 CQGWLFAKAMPAREFMQWLAN 518


>gi|309779134|ref|ZP_07673899.1| diguanylate cyclase/phosphodiesterase [Ralstonia sp. 5_7_47FAA]
 gi|308922095|gb|EFP67727.1| diguanylate cyclase/phosphodiesterase [Ralstonia sp. 5_7_47FAA]
          Length = 723

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 125/253 (49%), Gaps = 3/253 (1%)

Query: 703 DRVMIKEDLCLAVE-NSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
             V +  DL  A++ + +++L + P +      + G EAL++W HP  G ++    + +A
Sbjct: 460 MAVALASDLESAIKKDGQIFLEFQPQVDCSTGRVFGAEALLRWQHPVLGRVAPPIVVALA 519

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           +++  I  + L +L    +   +WR         + +N++ + LLD  L   +  ++ + 
Sbjct: 520 DDIGQIDQLGLRILSLACQQRAAWRGVLPD-DFVVAVNLSPRQLLDCRLYRNVLDILRRE 578

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             SP++++L  +ES ++     +   L +LR+ G+ + LDDFG   + L YL  +P DTV
Sbjct: 579 GLSPTQLELEITESTMLLPDITAIGNLKQLREAGVKVALDDFGMGHTSLHYLRELPLDTV 638

Query: 882 KFNGSLMT-GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
           K + SL    +      I+RSI  +++ +  + + + +     ++ L+ +GCD  Q    
Sbjct: 639 KIDRSLADVSAGSVNEHIVRSIASLSRTLNLSTVVEGVETAQQLQRLSALGCDRFQGYFF 698

Query: 941 ASPLGFNSILKLL 953
           + PL  +   + +
Sbjct: 699 SRPLAPSVCQQFV 711


>gi|218710939|ref|YP_002418560.1| GGDEF family protein [Vibrio splendidus LGP32]
 gi|218323958|emb|CAV20320.1| GGDEF family protein [Vibrio splendidus LGP32]
          Length = 828

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 163/425 (38%), Gaps = 34/425 (8%)

Query: 536 DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSL 595
           D  TG+PNR    ++L+ +   S         ++ + +  + +IN+  G  VGD +L  L
Sbjct: 419 DRRTGLPNRSVLREKLSKMSTDSH--------LLALKVTTFGQINEKYGYRVGDKLLHDL 470

Query: 596 TRRIGELLK----FPDILARLSGNRFGIILISENNSLKIAD----FAIAMRKSIAMPINL 647
           +    + L         L  +    + ++  S      I      FA         P  L
Sbjct: 471 SEYFQKALWQFFDEGCQLYSIGIGEWAVVFDSWVGQEHIHQRFSEFADQTEHVNFEPTGL 530

Query: 648 LEREITVTASIGFASWTSSK---ITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSFR 701
            + +  ++ SI     +       +  ++L  A  A   A  +  +        ++   R
Sbjct: 531 PDID-YLSVSICAGIASRRDFPTTSIDDLLLKAIDARRSAVSQNKHLVSAKTLIQLEKHR 589

Query: 702 SDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIA 761
            +++     +  AV N  +      I+     ++   E L++ +      I+  +F+ I 
Sbjct: 590 QEQLGWLSCVSRAVLNQNIVACSQLIVSAHSHQVESYECLVRIE-EDGQLIAPGKFLPII 648

Query: 762 EELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKT 821
           E   +   ++  M+ R    +    D          IN+A +D  + +    ++  I K 
Sbjct: 649 EGTHLYTRLSRQMITRTFDFMSQRTDSF-------SINLAPQDFSNEKTILHLEQAIKKI 701

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
              P RI L   E+  + +  R   +    R +G+++ +DDFG+  S +  +  +    +
Sbjct: 702 S-HPQRIGLEVLETEQIQDYGRLIEVCNHFRDLGVNIIVDDFGSGYSNIDEILKLEPQVI 760

Query: 882 KFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K +GSL+    + +    I + ++ + + +    +A+ ++ E   +    MG DY+Q  +
Sbjct: 761 KLDGSLIRNIDKDKKQRKIAQQLVSLCQILNAKTVAEFVHNEQVCRIAEDMGVDYLQGYY 820

Query: 940 VASPL 944
              P 
Sbjct: 821 FGQPQ 825


>gi|220934221|ref|YP_002513120.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995531|gb|ACL72133.1| putative diguanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 559

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 146/362 (40%), Gaps = 3/362 (0%)

Query: 329 HGMKGYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIV-ILIGFTVI 387
                 +     +   ++  +    + + +T R+                   L+  T  
Sbjct: 192 LAQTREQTRRTFLLTAMVATLLIFIIALNVTGRIQRQQEDLLSEVEARRRTEALLRETQE 251

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG 447
               +    +  +     R   A   +G   WDWDI R R+  +  I  + GL       
Sbjct: 252 GLERSVAERTAALRETTARLEDAQRIAGVGHWDWDIERGRLHWSDSIYQLFGLPRQGELA 311

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              +++  +H +DR   +  +D  +       Q + R+   D +   +        +S G
Sbjct: 312 SYEHFMAAVHPDDRQILQQAVDRALAGD-APYQVDHRIVRPDGEIRHVREEAEVTRDSTG 370

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
             +R +G   DIT      + +   A  D L+ +PNR  F   L   L+ ++     +  
Sbjct: 371 QPVRMLGTVRDITADIAIQQQLWHLAHHDPLSALPNRNLFRALLDQALERTSRSGK-KLA 429

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           VM+ D+D +K IND  G A GD V++   RR+   ++  D+ ARL+G+ F ++L   N++
Sbjct: 430 VMLCDLDGFKAINDRHGHATGDQVIIHTARRLKGAIRRSDVAARLAGDEFVVLLEDLNDA 489

Query: 628 LKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHR 687
            +    A  + K I  PI L   E++V  SIG A       T+  ++  A+ AMY AK  
Sbjct: 490 EEAVAVAGKLLKDINAPIALAAAEVSVGISIGIAVSPEHGETAETLMAGADAAMYAAKAA 549

Query: 688 GG 689
           G 
Sbjct: 550 GK 551


>gi|146312569|ref|YP_001177643.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
 gi|145319445|gb|ABP61592.1| diguanylate cyclase/phosphodiesterase [Enterobacter sp. 638]
          Length = 731

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 149/433 (34%), Gaps = 21/433 (4%)

Query: 524 KSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVL 583
              +G    A  D LTG+PN ++    L           +    V  + I   + ++   
Sbjct: 315 WLKQGWQERALTDPLTGLPNMRALEAFLEK---------HPHSHVCCLRIANQEFLSRHY 365

Query: 584 GIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAM 643
           G+ +  +    +T  +   L   + L +L G+   ++L     + ++      +      
Sbjct: 366 GMMMRVNCKREVTSALQPFLLTDEKLFQLPGSELVLVLNGTETAARLQHMVDHLNNRRIY 425

Query: 644 PINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN---HVESFRVSSF 700
             N    ++   AS G +           +L         +               VS  
Sbjct: 426 WNNTA-LDVEFGASWG-SLSDEWGENLHHVLGQLSWLSEQSCANQTVLALTHSMATVSDQ 483

Query: 701 RSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLI 760
            ++RV +   +  A+    L L   PI         G   ++         I   +F+ +
Sbjct: 484 TTERVFLLSRIKRALSEGGLRLYVQPIQNAAGG---GYHEILTRLESDGELIFPDQFIPL 540

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
             +  + +  +L ++E +   +       +       +N+    L+  E    +  L  +
Sbjct: 541 IAQFNLSRRFDLSVVEAMVIWLADHP--VSHHSARFSVNLMPLTLMQKETASDIITLFER 598

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
              S + + +  +E       E S L + RLR+ G  + +DDFGT  +    L  +  D 
Sbjct: 599 HGVSSAVVIIEVTEEQAFSESESSILNIQRLREFGFKIAIDDFGTGYANYERLKRLEADI 658

Query: 881 VKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +G  +           I++SI  +AK    +++A+ +  +   + L   G DY+Q  
Sbjct: 659 IKIDGCFIKDICADDMDAMIVKSICNLAKTKSLSVVAEYVETQEQRQMLLAFGVDYLQGY 718

Query: 939 HVASPLGFNSILK 951
            +  P     +  
Sbjct: 719 LIGKPHPIEELQA 731


>gi|152972937|ref|YP_001338083.1| hypothetical protein KPN_04461 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892551|ref|YP_002917285.1| hypothetical protein KP1_0324 [Klebsiella pneumoniae NTUH-K2044]
 gi|150957786|gb|ABR79816.1| hypothetical protein KPN_04461 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544867|dbj|BAH61218.1| hypothetical protein KP1_0324 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 534

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 111/261 (42%), Gaps = 5/261 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            S  R      +  L  A+   +L L Y PII + +   VG EAL++W       ++ +E
Sbjct: 261 WSRTRRQYHSPRNMLQRALSCRQLRLHYQPIIDIKNNRCVGAEALLRWPGFDGPVMNPAE 320

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  +  ++++ +  ++  +      P ++I IN+++ D     L   +  
Sbjct: 321 FIPLAENEGMIAQVTDYVVDELFYEMGEFLAS--HPQLYIAINLSASDFHSARLISQISE 378

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                     +IK+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +
Sbjct: 379 KAHSYAVCIGQIKIEVTERGFI-DVPKTTPVIQAFREAGYEIAIDDFGTGYSNLHNLHAL 437

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + + +   T    +  I   II MA+ +    IA+ +     +  L + G  Y
Sbjct: 438 NVDILKIDKTFVDTLTTNNTSHLIAEHIIEMARGLRLKTIAEGVETPEQVSWLYKRGVQY 497

Query: 935 IQDSHVASPLGFNSILKLLKE 955
            Q    A  +     ++ L  
Sbjct: 498 CQGWLFAKAMPAREFMQWLAN 518


>gi|266621650|ref|ZP_06114585.1| response regulator/phosphatase [Clostridium hathewayi DSM 13479]
 gi|288866685|gb|EFC98983.1| response regulator/phosphatase [Clostridium hathewayi DSM 13479]
          Length = 1261

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 153/342 (44%), Gaps = 5/342 (1%)

Query: 379 VILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATIL 438
            +   +T++  +  +    +G+    ER  + +  + D++++W++  D ++ + +     
Sbjct: 624 GMEYIYTLLVDITQSRKAMEGLQESVERHKIILNQTKDVIFEWNVTTDEISYSSNWECKY 683

Query: 439 GLASG-SMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMII 497
           G             +  +I+ +D  +     +  +  R+   + EFR+  A+ ++ W  +
Sbjct: 684 GYQPIIEGIRRRLPYASHINPDDIPDVMKFTNDMMTGRQLG-EVEFRLANAEGRYCWCRV 742

Query: 498 RIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
           R     +  G+  + IGI  DI ++K+  E ++  A +D LT + N+++   ++   L+L
Sbjct: 743 RATAQFDPAGNTDKVIGIIEDIDDEKRETEKLIDRAERDVLTKLYNKRAARHKINRFLEL 802

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           S   +     +++ID+D +K +ND  G   GD VL  L  RI    +  DI++R+ G+ F
Sbjct: 803 SQGREGS--AMLIIDVDNFKMVNDRYGHMFGDAVLTELAARITSHFRDSDIISRIGGDEF 860

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
            + +    N   + + A  +  S+        +++  + SIG A           + +N+
Sbjct: 861 MVFMPGTVNHEMVTERAGRLMASLQTMFKNNMKDVPFSCSIGIAYSPEDGSDFQSLFQNS 920

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSE 719
           + A+Y AK  G N    +      +  + +KE+     E  E
Sbjct: 921 DAALYQAKLEGKNRWMQY-RRPAVNAALELKEEADRPEEMRE 961



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 433 DIATILGLASGSMHGPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
            +  + G     +     N +   I+  DRD     L S +       + E+R+   D +
Sbjct: 550 GLHGLTGCTEQVIRDKYHNRYKEVIYPADRDLVSQGLVSQM-GEGRIAELEYRLVTEDGR 608

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLE 527
             W++ R   ++  +G +     +  DIT+ +K++E
Sbjct: 609 LIWVMDRSILVTEEDG-MEYIYTLLVDITQSRKAME 643


>gi|330828563|ref|YP_004391515.1| Cyclic di-GMP phosphodiesterase YahA [Aeromonas veronii B565]
 gi|328803699|gb|AEB48898.1| Cyclic di-GMP phosphodiesterase YahA [Aeromonas veronii B565]
          Length = 493

 Score =  251 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 3/248 (1%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
            E+L  A+   E      P++   DE+  G E L++W HPK G IS   F+ +AE+  +I
Sbjct: 245 AEELKRALIEEEFIPYLQPVVSGEDEQWRGCEVLMRWQHPKQGMISPDRFIPLAEDSGLI 304

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   ++ ++      +  +          NI++K   D +L    +A +     +P  
Sbjct: 305 VPMTSLLMAQVRDHFSPYARKLPA-KFHFCFNISAKHFQDLDLLADCKAFLDAFKDNPVD 363

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + L  +E  ++   E +  +   LRK+G+ +++DDFGT  S L+YL     D +K + S 
Sbjct: 364 LGLELTERELLVADETTAQMFAELRKLGVLISIDDFGTGHSSLTYLQQFQVDALKIDRSF 423

Query: 888 MTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +           I+ ++I +AK +E  +IA+ +  +     L     DY+Q    + P+ 
Sbjct: 424 VEMIGTDALSSHIVENVIDLAKRLELILIAEGVEKQSQADYLRARHVDYLQGYRYSRPIP 483

Query: 946 FNSILKLL 953
                K L
Sbjct: 484 MKQFCKTL 491


>gi|254505926|ref|ZP_05118071.1| diguanylate cyclase with PAS/PAC sensor [Vibrio parahaemolyticus
           16]
 gi|219551149|gb|EED28129.1| diguanylate cyclase with PAS/PAC sensor [Vibrio parahaemolyticus
           16]
          Length = 317

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 125/310 (40%), Gaps = 6/310 (1%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLA 441
             T+ +         +      E+ + A+ G+G  +W+  +   ++     +   +LG  
Sbjct: 5   ETTIAKLKDRIAELEENNRRLEEKLNAALDGTGLCLWEQHVPTGQLRIFNMEWGKMLGYQ 64

Query: 442 SGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP 501
              +   +  W   +H +D D      ++ +       Q   R+   D    W+  R R 
Sbjct: 65  PHELEATVEVWKSKLHPDDYDLAVGAFEAHLRGEADAYQVVHRMLHKDGTHSWVSDRGRI 124

Query: 502 M-SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           +  + NG  LR +G   DIT +K+  E +   A +D LTG+ NRQ+           +  
Sbjct: 125 VEYDDNGSPLRIMGTHIDITNEKRYEEELARLASEDPLTGLFNRQALTSHFADY---AKR 181

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
             +    ++ ID+D +K +ND LG   GD VL+ ++  + +       +ARL G+ F  +
Sbjct: 182 YPHRPSALIFIDLDDFKTVNDNLGHKAGDLVLMQISAWLKDFAPKDAFIARLGGDEFV-L 240

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L  E++   I  F   +      PI L      V  SIG   +T        +   ++ A
Sbjct: 241 LCHEDSPQSIDRFTDDLLSQSQQPIQLDNGSAKVGFSIGICHFTPQSYDFEALYVASDQA 300

Query: 681 MYHAKHRGGN 690
           MY  K  G N
Sbjct: 301 MYSIKQNGKN 310


>gi|242280532|ref|YP_002992661.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
 gi|242123426|gb|ACS81122.1| diguanylate cyclase with PAS/PAC sensor [Desulfovibrio salexigens
           DSM 2638]
          Length = 763

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 139/311 (44%), Gaps = 8/311 (2%)

Query: 387 IQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGL-ASGSM 445
           I  V       + +    E  S  V  +   ++        ++    +A   G  +S S 
Sbjct: 458 IIDVTDRKKEEKALKQAEENYSALVTTAPLGIFQTTPQGKFISANNQMAAYYGYNSSESF 517

Query: 446 HGPIRNWLPYIH--INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMS 503
              I +     +    +RD   TILD F         +E R +  D    W    I  + 
Sbjct: 518 LAEITDIARDCYEQPEERDRLMTILDKF----GRTSNFEARQKRRDGSTFWASETIMAIE 573

Query: 504 NSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDN 563
           + +G+I+R  G   DI+E+K+  E +   A  DNLTG+PNR  F DRL   L  +  +  
Sbjct: 574 DEDGNIIRMDGFLMDISERKEHEETMRRLAMFDNLTGLPNRVLFDDRLKQALSHANRN-R 632

Query: 564 LRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILIS 623
           ++  ++  D+D +K++ND LG   GD VL  +  R  + L+  D L+R+ G+ F  IL  
Sbjct: 633 MKVAILYADLDNFKQVNDELGHMAGDTVLKEVAGRFSDCLRTSDTLSRIGGDEFIFILQD 692

Query: 624 ENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYH 683
              S +I   A  +  S+  P  + E+   + ASIG + +  +     ++++ A+ AMY 
Sbjct: 693 VGTSTEIEVVAQRIIDSMRAPFYVGEKVYRIGASIGISVFPDNGEEKEKLIRIADEAMYK 752

Query: 684 AKHRGGNHVES 694
           AK++G N    
Sbjct: 753 AKNKGKNGYSF 763



 Score = 71.9 bits (175), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 73/218 (33%), Gaps = 19/218 (8%)

Query: 329 HGMKGYERAVLLIPAWILIFIW--FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTV 386
             +K  +     + AW  +      + + ++  +      +         + V L     
Sbjct: 263 FTVKRNKHVERKLVAWHSVRFGEMKLVVALSAPETDATSSLASIQAVRAAMFVFLSLLFF 322

Query: 387 IQHVLATGYFSQGI--FSDGER------QSLAVLGSGDIVWDWDIVR--DRVTTTPDIAT 436
                   + SQ +    + E              +  I++  +I +  +    +  I  
Sbjct: 323 AVVFFFYYHRSQQLLLRQNKELKSKDNVFGAIAKNAPGIIYKCEISQPFEMHYISSKIRK 382

Query: 437 ILGLASGS-MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWM 495
           + G    + + G    +   +H  DR   + ++ + +   +   ++E+R+  +D    W+
Sbjct: 383 VTGFDPDNFLKGGKSMYYDLVHPEDRAGLKNVISNSLSNNK-SFEHEYRIIRSDGNHRWV 441

Query: 496 IIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             +   +   N      +G   D+T++KK  E  L  A
Sbjct: 442 YEKGTILLEEN----SMVGFIIDVTDRKK-EEKALKQA 474


>gi|119899002|ref|YP_934215.1| GGDEF/PAS/PAC-domain-containing protein [Azoarcus sp. BH72]
 gi|119671415|emb|CAL95328.1| GGDEF/PAS/PAC-domain containing protein [Azoarcus sp. BH72]
          Length = 1255

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 7/297 (2%)

Query: 401  FSDGERQSLAVL---GSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIH 457
                 +  LA      + + +   D  R  V   P    I G +     G     L    
Sbjct: 937  RDSEAQLRLAATVFTHAHEGIAICDAERRIVDVNPTFCEITGYSRQEAIGASLALLNSG- 995

Query: 458  INDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIAN 517
              DR      +   V  RRG  + E      D   +   + I  + ++ G    YIG  +
Sbjct: 996  -EDRQALSPDMWQTVA-RRGHWEGELWNLRKDGTEYAQRLTISAVYDAGGTPTHYIGTFS 1053

Query: 518  DITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYK 577
            DIT  K+  E +   A  D LTG+PNR    DRL   L  +  +++    V  +D+D +K
Sbjct: 1054 DITFVKRQQEQLEHLAHYDPLTGLPNRSLLADRLQLALAQARREESA-VAVCYLDLDGFK 1112

Query: 578  KINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAM 637
             +ND LG   GD +LV + RR+ + ++  D +ARL G+ F ++L+      +       +
Sbjct: 1113 AVNDELGHQAGDLLLVEIGRRLKDCVRAGDTVARLGGDEFVLLLLDVAGQEECIQAVSRV 1172

Query: 638  RKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVES 694
              +IA P+ +     +V+ASIG A +         +L++A+ AMY AK RG N  + 
Sbjct: 1173 LAAIARPVTIAGEYRSVSASIGIALFPDDDDEPEVLLRHADQAMYLAKQRGKNCYQW 1229



 Score = 55.3 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 45/146 (30%), Gaps = 5/146 (3%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
            +      + + +   R    +    + V         +        +  + + S+    
Sbjct: 807 AIEADRSRRQLAASEARLQTIIDTEPECVSLRTPDGRVLEMNAAGLAL--VEADSVEALN 864

Query: 450 RNWL-PYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGD 508
              L   +    R+ F  +           L++E           W+      + +++G+
Sbjct: 865 AVGLPQLVAPAYREAFAALGRRVSAGESATLEFEIVGLR--GSRRWIDAHATALRDASGE 922

Query: 509 ILRYIGIANDITEQKKSLEGILCNAF 534
           +   + +A D+T+++ S   +   A 
Sbjct: 923 VTAILSVARDVTQRRDSEAQLRLAAT 948



 Score = 55.3 bits (132), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 11/159 (6%)

Query: 373 GGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTP 432
            G V     +    I H +     ++    +  +       + D     D          
Sbjct: 387 AGPVGSGADLRIYAIVHDITERNIAE---QELRKFKFFNDNASDAYILIDEDARIHYVNR 443

Query: 433 DIATILGLASGSMHGPIRNWLPYIHIN-DRDNFRTILDSFVGYRRGRLQYEFRVRAADNQ 491
               +LG     +       +P I  + D    R   +S    R    + E   +  D  
Sbjct: 444 ATCDLLGYTEAELLQLT---IPDIDPHYDVARVRAHFNSAKQGRVPPFESEH--QRRDGS 498

Query: 492 FHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
              + +    +   +G  + +   A DIT +K+    + 
Sbjct: 499 RFPVEVTSTALQ-VDGRWMAFTA-ARDITLRKRVENELR 535



 Score = 52.6 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 18/187 (9%)

Query: 390 VLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPI 449
                   + + ++  +       + D  +  +     +         LG +   +    
Sbjct: 520 AARDITLRKRVENELRKFRFISDNANDANFLLNPDGRFLYVNALACERLGYSEAELLQMS 579

Query: 450 RNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDI 509
              +P I                G R    +   R R  D +   + I +  +    G+ 
Sbjct: 580 ---VPDIDPTYGTPCSRPWTQRPGDRPAPFETLHRCR--DGRTIPVEITLTSV-EFQGER 633

Query: 510 LRYIGIANDITEQKK----SLEGILCNAFQD---NLTGIPNRQSFLDRLTTILDLSATDD 562
           LR+   A DIT++K+            A  +    L+ +P      ++L   L + A   
Sbjct: 634 LRF-ATARDITDRKRIEAAERRQRESLARLNEVSALSHLP----LEEQLRRALAIVAAQL 688

Query: 563 NLRPTVM 569
            L   ++
Sbjct: 689 ELPCGIV 695



 Score = 40.3 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 85/318 (26%), Gaps = 21/318 (6%)

Query: 216 SMLIPTFAMAWVVLGYISIDFGFLSKLVN---LPSGELLIWRACSEIALSSSLIIFLFMY 272
             L         V     I   +L+ +V    +P+  L  W   +  AL   + +     
Sbjct: 117 RYLAVGVLGGMAVNATNGITQLWLADIVPGNAVPAAWLTWWLGDAMGALVLGIPLLTARR 176

Query: 273 LHWNRWHAKVGYITFSGIACIAILFCMSFYYPMVTASIARITLASIVLYYTYFIIYHGMK 332
            +W +                  L   +  +           L    L   +  I     
Sbjct: 177 GNW-QPLFSGRRRVELLSVLGLTLTAGAVVFEGNAIHSTTPLLYLPFLLLCWLAIRGSAG 235

Query: 333 GYERAVLLIPAWILIFIWFIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLA 392
               A LL+ A  +            +    +       +    +I +LI   +I    A
Sbjct: 236 LASTAALLLSAEAVWATAQGIGPFQASDLHQSLATLWGYMATATIITVLITV-LIGETSA 294

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNW 452
                + IF       L V                V      +   G +   +     + 
Sbjct: 295 NERRLRQIFETNHAIKLIVRPG---------DHRIVDANEAASAFYGHSLARLRTLRIDD 345

Query: 453 LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRY 512
           +      +   F   + + +    G      R R A  +   + +   P+   +G  LR 
Sbjct: 346 IAT----EPQPFGADVLARLESESG-WHLRTRHRLASGEVRDVEVYAGPV--GSGADLRI 398

Query: 513 IGIANDITEQKKSLEGIL 530
             I +DITE+  + + + 
Sbjct: 399 YAIVHDITERNIAEQELR 416


>gi|241766258|ref|ZP_04764154.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
 gi|241363647|gb|EER59045.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
           2AN]
          Length = 758

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/315 (21%), Positives = 127/315 (40%), Gaps = 5/315 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           F  +  +       + +F + ER  L +   GD V   D         P    + G    
Sbjct: 425 FVQVIDISERKRIEEALFEEKERMRLTLRAIGDAVVCTDAQGVITYLNPVAERMTGWQGF 484

Query: 444 SMHGP-IRNWLPYIHINDRDNFRTILDSFVGYRR--GRLQYEFRVRAADNQFHWMIIRIR 500
              G  +   +            + L   +  ++     +   R R +  +   +     
Sbjct: 485 DAAGRNVDEVIGLRGEGGVAPQPSPLRLALERQKPVEPTRGVLRHRTS-GESFDVEESAS 543

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+++ +G +   + +  D+TE       +   A  D LT +PNR    DR    L  +  
Sbjct: 544 PITDRHGQVTGAVAVLRDVTESVAMAARMEHLAQYDPLTDLPNRVLLQDRARQALAQALR 603

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
           D+ +   VM ID+D +K++ND LG  VGD++LV L  R+  +++  D + R  G+ F ++
Sbjct: 604 DERM-VAVMYIDLDGFKQVNDTLGHDVGDELLVQLAGRLKAVMRVSDTVCRQGGDEFVVM 662

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L   +++ +    A  +  +   P  L  + + V  S G + +        E+ +NA+ A
Sbjct: 663 LPGIDSAEQACSVARKIMAACEAPYVLQSQTLPVGLSGGISLFPVHGENFEELSRNADAA 722

Query: 681 MYHAKHRGGNHVESF 695
           MY AKH G      +
Sbjct: 723 MYAAKHAGRRQFRLY 737



 Score = 51.5 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 52/181 (28%), Gaps = 9/181 (4%)

Query: 351 FIGLWMAITKRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGER---- 406
            + +  ++   L +      ++GG  L++++    +           Q I    E+    
Sbjct: 264 VVNVAQSVDVVLASWHRSAWVLGGFALVLMVSCVGLAWLFARELRRRQEISGQLEQVEHD 323

Query: 407 QSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRT 466
               +     +V  WD                G++   + G   +    +          
Sbjct: 324 LRTILNNLPSMVGYWDRDLHNRFANHAYLEWYGMSPEELRGK--HVRELLGEALYAKNLP 381

Query: 467 ILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
            L+  +  +    +    +     Q    +    P  +  G +        DI+E+K+  
Sbjct: 382 YLEGALKGQAQLFERT--IVDPQGQSRHTLASYVPDLDG-GQVRGIFVQVIDISERKRIE 438

Query: 527 E 527
           E
Sbjct: 439 E 439


>gi|238920472|ref|YP_002933987.1| cyclic diguanylate phosphodiesterase (EAL) [Edwardsiella ictaluri
           93-146]
 gi|238870041|gb|ACR69752.1| cyclic diguanylate phosphodiesterase (EAL) [Edwardsiella ictaluri
           93-146]
          Length = 514

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 4/248 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+   +      P++   DE + G E L++W HP+ G I  + F+ +AE+  +I A+
Sbjct: 266 LREALRQRQFIPYIQPVVDGADESLSGCEILMRWQHPQMGLIPPNNFIPLAEDSGLIVAM 325

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++ +++                   NI++    D  L E  +  I     +P R+ L
Sbjct: 326 TRDIMRQVSDYFAPRCRSLP-THFHFGFNISASHFNDLSLVEECRRFIDAFEANPIRLVL 384

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E   + + E +  +  +LR +G+ L LDDFGT  S L+YL    FD +K + S +  
Sbjct: 385 ELTERQRVPDGELTEQIFHKLRGLGVLLALDDFGTGHSSLAYLQRYHFDIIKIDRSFVRM 444

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +AK ++   +A+ +     ++ L     DY+Q      P     
Sbjct: 445 IGSDMLSGHIVDTVIALAKRLDMITLAEGVESGEQLQHLRGYRLDYLQGYLFGCPQPLPD 504

Query: 949 ILK-LLKE 955
             +  LK 
Sbjct: 505 FTREWLKS 512


>gi|238785822|ref|ZP_04629792.1| hypothetical protein yberc0001_25540 [Yersinia bercovieri ATCC
           43970]
 gi|238713275|gb|EEQ05317.1| hypothetical protein yberc0001_25540 [Yersinia bercovieri ATCC
           43970]
          Length = 490

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   ++  +G E L++W HP  G I  + F+ +AE+  +I  +
Sbjct: 245 LKQALENNEFIPYMQPIVSGKEKYWIGCEVLMRWQHPGQGMIQPNHFIPMAEDSELIVPM 304

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++++++     + +Q          NI++    D  L +  +  I     +   I L
Sbjct: 305 TRSIMQQVSARFAPYVNQLP-EGFHFGFNISANHCRDLSLLDDCRNFIQAFGGNKINITL 363

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++   E +  L   L  +G+ + +DDFGT  S LSYL     D +K + S +  
Sbjct: 364 ELTERKLIVADEMTDRLFAELHALGVFIAIDDFGTGHSSLSYLQKFKVDFLKIDQSFVGM 423

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  +  ++ L     DY+Q      P+  + 
Sbjct: 424 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENDTQMRYLQAHNVDYLQGYMFGRPMPMSE 483

Query: 949 ILKLL 953
             K +
Sbjct: 484 FAKYM 488


>gi|94314195|ref|YP_587404.1| putative signal transduction protein [Cupriavidus metallidurans
           CH34]
 gi|93358047|gb|ABF12135.1| putative signal transduction protein (EAL domain) [Cupriavidus
           metallidurans CH34]
          Length = 529

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 6/263 (2%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
               + R  ++ +L  AV   E+ + Y PI  L D   VG+EAL++W       +  + F
Sbjct: 267 WRRATRRFSLEGELRSAVRRHEMAVHYQPIASLADNHWVGVEALVRWRR-NGRLVRPNLF 325

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + +AE   +I+ I   +L+ I  ++ +   +   P  ++ IN+  +DL        + A 
Sbjct: 326 IPMAENAGLIQQITDQVLDIILSELGTLLRRF--PSFYVSINVGVEDLKSRRFLSVLNAR 383

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           +  +  +P +I++  +E   +  P+ +R  +   R  G  + +DDFGT  S LSYL    
Sbjct: 384 LRGSGIAPQQIRIEATERGFLE-PDVARDTIQAFRDAGHPVYIDDFGTGYSSLSYLQSFK 442

Query: 878 FDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K + S +    ++  +  +   II MA+++   +IA+ I  ++    L   G DY 
Sbjct: 443 VDALKIDKSFVDTIGQEAASSTVAPHIIAMAQSLGLQVIAEGIEDKMQADFLREQGVDYG 502

Query: 936 QDSHVASPLGFNSILKLLKERFP 958
           Q      P+    + +L+    P
Sbjct: 503 QGWLFGRPMPAVELAQLMTRATP 525


>gi|261823681|ref|YP_003261787.1| EAL domain protein [Pectobacterium wasabiae WPP163]
 gi|261607694|gb|ACX90180.1| EAL domain protein [Pectobacterium wasabiae WPP163]
          Length = 534

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 5/261 (1%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             ++  +++ +++L   + N E  + Y PI     +   G+E L++W       I    F
Sbjct: 259 WYWQKRKLLFRDELRKGIANGEFSVYYQPIYDAESQSCTGVETLLRWRRSNGQWIRPDIF 318

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE   MI  I   + + +A DI SW+ +       + +N+A++ L        +   
Sbjct: 319 ISAAEAESMIIPITRHLFDLVAVDIASWQVKNG---FHLSLNVAAEHLHHPSFVSDVHRF 375

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K       I L  +E  ++ N       L +LR+ G  + +DDFGT    LSYL   P
Sbjct: 376 AEKVASHSLNITLELTERNLISNGPEIIQRLHQLREDGFLIAIDDFGTGHCSLSYLQNFP 435

Query: 878 FDTVKFNGSLMTGS-TEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   ++   +    A IL +II ++  I+   IA+ +     +  L + G  YI
Sbjct: 436 LDCLKIDQGFVSAISSPDEEAPILDAIINLSHRIKLQSIAEGVETTQQLMYLQQHGVKYI 495

Query: 936 QDSHVASPLGFNSILKLLKER 956
           Q    A P+   S+L  L   
Sbjct: 496 QGFLYAKPMNNESLLVWLHYH 516


>gi|194443540|ref|YP_002039711.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402203|gb|ACF62425.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 516

 Score =  251 bits (642), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A++N E+ + Y PI+ L   +IVG EAL +W       +S   F+ +AE+  + +
Sbjct: 273 HRLQDAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLTE 332

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +   +++ +  D+ SW          I IN+ + DL    L   +  L++++  SPS+I
Sbjct: 333 PLTRLIIDTVFEDMGSWLKSHPEQ--HISINLEASDLASETLPTLLSMLLNRSQISPSQI 390

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R  G S+ +DDFGT  S LSYL  +  D +K + S +
Sbjct: 391 ALELTEREF-ADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFV 449

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    + PL   +
Sbjct: 450 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETTRQEQWLRQHGVHYGQGWLYSKPLPATA 507

Query: 949 ILKLLKERF 957
            +   ++R 
Sbjct: 508 FILWAEQRL 516


>gi|254508807|ref|ZP_05120918.1| FOG: EAL domain protein [Vibrio parahaemolyticus 16]
 gi|219548264|gb|EED25278.1| FOG: EAL domain protein [Vibrio parahaemolyticus 16]
          Length = 825

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 180/442 (40%), Gaps = 36/442 (8%)

Query: 521 EQKKSLE-GILCNAFQ-DNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
           E+K + +   L N+++ D  TG+ NR +    L   L + A D++    V+ + +  + +
Sbjct: 397 ERKLAAQTEKLINSYRLDKRTGLKNRVA----LQEALKVVAPDEH----VITLKLSNFHQ 448

Query: 579 INDVLGIAVGDDVLVSLTR----RIGELLKFPDI--LARLSGNRFGIILISENNSL---- 628
           +N+  G  V D+++  L+     R+        +  L  +    + I+  S+  S     
Sbjct: 449 VNEKYGYQVADELISDLSDHFVDRLSSRHGSEMVKSLYYIGTAEWAIVFHSQQPSDLIKQ 508

Query: 629 KIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITS--SEMLKNAELAMYHAKH 686
           + + FA  +      P  L + +    + IG  +  +        E+L  A  A    K 
Sbjct: 509 EFSQFADQIEHINFEPYGLPDVDYLSVSIIGGIASVADFPDVTGDELLLKAIDARRRGKE 568

Query: 687 RGGNHVESFRV---SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
           R  + + +           DR+ +   +  A+ N  +     PI      E +  E L++
Sbjct: 569 RNTHFMNARDCGTTMEEHQDRLGLMGSVSRAILNQRIITYSQPIFAAYSREQISQECLVR 628

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            +      IS   F+ I E   +   ++ +M+      +   ++          IN++ +
Sbjct: 629 IED-DGEIISPGRFLPIIEGTHLYTRLSRYMMTSTLDFMADKQESF-------SINLSPQ 680

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
           D+L +     ++  + K    PSR+ +   ES  + +  R   + G  +K+G+ + +DDF
Sbjct: 681 DMLSDRTLSILEQAVRKLN-DPSRLGIEVLESEQIKDFARMAEVCGHFKKMGVRILVDDF 739

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGE 921
           G+  S +  +  +  D +K +GSL+           I   ++ + + +    +A+ ++  
Sbjct: 740 GSGYSNIDEIIRLEPDVIKLDGSLIKTIDVDNKQRQITGQLVQLCQVLNAKTVAEFVHNP 799

Query: 922 IDIKELTRMGCDYIQDSHVASP 943
              +    +G DY+Q  H+A P
Sbjct: 800 KVCQIAEDLGVDYLQGFHLAEP 821


>gi|309390294|gb|ADO78174.1| diguanylate cyclase with PAS/PAC sensor [Halanaerobium praevalens
           DSM 2228]
          Length = 410

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 127/302 (42%), Gaps = 6/302 (1%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           +I  +       + +    ER  LAV G+   +WDW++  + V    + A +LG     +
Sbjct: 111 LINDITENEKRKRELKEVKERLELAVDGAKIGIWDWNVKTNAVHYNHNWAQMLGYQLSEL 170

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SN 504
              I  WL  +H  D       ++     +      ++R+      + W+    + +  +
Sbjct: 171 EKNINTWLKLLHSEDEARIFEKMNDHFQGKTAIYSSQYRLLTKSGSWKWIRDIGKVIERD 230

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G + R +G+  DI +QK++ + I   +  D LTG+ NR+ F  RL  +          
Sbjct: 231 NTGAVKRIVGVHIDIDQQKRAAKEIEYLSIHDELTGLYNRRYFNKRLAEL----RNSYQY 286

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
             ++++ DID  K IND  G ++GD  +      + + L+  DI+AR+ G+ F IIL   
Sbjct: 287 PISLIIGDIDNLKIINDNYGHSMGDHYIKKTAAALEKSLREDDIVARIGGDEFAIILAR- 345

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
            +          + ++I +     E    +T ++G  + T       +    A+  MY  
Sbjct: 346 TDQNLAQTVISRIERNIKIENQKGELPEPLTIALGSETVTEQVADLEKCFNQADQKMYQQ 405

Query: 685 KH 686
           K 
Sbjct: 406 KK 407


>gi|293414304|ref|ZP_06656953.1| rtn-like protein [Escherichia coli B185]
 gi|291434362|gb|EFF07335.1| rtn-like protein [Escherichia coli B185]
          Length = 510

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 250 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 309

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 310 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 366

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L  
Sbjct: 367 VLHI--KNAISDKFNIVLEITERNLVEDTDLALQKINELRIHGCEFAVDDFGTGYCSLGL 424

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 425 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTPHQAEYLINN 484

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 485 NVTLVQGYLYAKPMKATEFYQWYVNR 510


>gi|213163001|ref|ZP_03348711.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213425156|ref|ZP_03357906.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213581968|ref|ZP_03363794.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213649973|ref|ZP_03380026.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213852823|ref|ZP_03382355.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 516

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I+  
Sbjct: 238 FYRRWYLKRLSLAREISRGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFITPD 297

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   + ++
Sbjct: 298 IFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQDIE 354

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSYL  
Sbjct: 355 AL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSYLQQ 412

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   G  
Sbjct: 413 LPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSHGVG 472

Query: 934 YIQDSHVASPLGFNSILKLL----KERFPLVK 961
           ++Q    A P+G N  +  L    + +  L+K
Sbjct: 473 FVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 504


>gi|288937629|ref|YP_003441688.1| EAL domain protein [Klebsiella variicola At-22]
 gi|288892338|gb|ADC60656.1| EAL domain protein [Klebsiella variicola At-22]
          Length = 534

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 112/268 (41%), Gaps = 5/268 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +  R      +  L  A+   +L L Y PII + +   VG EAL++W       ++ +E
Sbjct: 261 WTRTRRQYHSPRNMLQRALSCRQLRLHYQPIIDIKNNRCVGAEALLRWPGFDGPVMNPAE 320

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  I  ++++ +  ++  +      P +++ IN+++ D     L   +  
Sbjct: 321 FIPLAENEGMIAQITDYVVDELFYEMGEFLAS--HPQLYVAINLSASDFHSARLISQISE 378

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                     +IK+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +
Sbjct: 379 KAHSYAVCIGQIKIEVTERGFI-DVAKTTPVIQAFREAGYEIAIDDFGTGYSNLHNLHAL 437

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + + +   T    +  I   II MA+ +    IA+ +     +  L + G  +
Sbjct: 438 NVDILKIDKTFVDTLTTNNTSHLIAEHIIEMARGLRLKTIAEGVETPEQVSWLYKRGVQF 497

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
            Q    A  +     ++ L      +  
Sbjct: 498 CQGWLFAKAMPAREFMQWLANAPTPISR 525


>gi|218463693|ref|ZP_03503784.1| putative sensory box/GGDEF family protein [Rhizobium etli Kim 5]
          Length = 199

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           AEE   I  +  ++L++  ++   W D     P+ I +N++    +   LCE ++A++ +
Sbjct: 1   AEESGSIVQLGEWVLQQACKEAARWPD-----PLRIAVNVSPVQFMLPNLCERIEAILKE 55

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
           T  +P R+++  +E+ ++ + +R    L RLR +G+ + +DDFGT  S LS L   PFD 
Sbjct: 56  TGLAPGRLEIEITEAALIRDRDRVMATLQRLRSLGVHIVMDDFGTGFSSLSNLRTFPFDK 115

Query: 881 VKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K + S          A  I+R+II +  ++   ++ + +  E   + +   GC  +Q  
Sbjct: 116 IKVDRSFTGMLDHDAAARSIVRAIIGLGHSLGMPVVTEGVETETQRQIVVEEGCAQVQGF 175

Query: 939 HVASP 943
            +  P
Sbjct: 176 LLGRP 180


>gi|117619094|ref|YP_855452.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560501|gb|ABK37449.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 395

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/278 (26%), Positives = 135/278 (48%), Gaps = 8/278 (2%)

Query: 688 GGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHP 747
           G    +  R       R+ + ++L LA+E  +L   Y P +     + VG+EAL +W HP
Sbjct: 118 GAWRPQQERAQEEDGHRLTL-DELSLALEQDQLLPWYQPKVSFGSGQWVGMEALARWQHP 176

Query: 748 KWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLD 807
           ++G IS + F+ +AE   +I  +   ++ +  RD   W        + + +N+++  L++
Sbjct: 177 EYGLISPARFIPLAEHNGLIDQLTEVIISKSLRDGHLWEQTG--LSLNLSMNLSTTSLIE 234

Query: 808 NELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKC 867
            +LC  +     +   +P  I L  +ES  + +  +S  +L RLR  G  L++DDFGT  
Sbjct: 235 GDLCNTLINQCQRWSINPELITLEVTESSFVKDLGKSLEVLTRLRMHGFGLSIDDFGTGY 294

Query: 868 SLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
           S +  L  +PF  +K + S +        R+AI+ S I +A+ +    +A+ +  E+  +
Sbjct: 295 SSMQQLALLPFTELKLDRSFVDRCFEDPSRLAIIESSIELARKLGLKSVAEGVEDELTWR 354

Query: 926 ELTRMGCDYIQDSHVASPLGFNSILKL---LKERFPLV 960
            L R+GCD  Q    A P+    +L      +ER P +
Sbjct: 355 LLARLGCDVCQGFFSARPMPREELLGWHDSWRERLPAL 392


>gi|317048452|ref|YP_004116100.1| EAL domain-containing protein [Pantoea sp. At-9b]
 gi|316950069|gb|ADU69544.1| EAL domain protein [Pantoea sp. At-9b]
          Length = 520

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 117/266 (43%), Gaps = 10/266 (3%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           + V    ++R+ +   +   +  +E  +   P+I     E  G+E L++W +P+ G I+ 
Sbjct: 257 YIVWLATANRMSLSWQISYGITANEFMVYCQPLINAKSGECDGIELLLRWHNPRQGWIAP 316

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ +AE   +I  +  F++ ++  ++    +  + P   I IN+A+    D  + E +
Sbjct: 317 DVFIPLAERQNLIAPLTRFVIAKVVDEL---PNLPHCPSFHIAINVAASHFHDRAIVEDL 373

Query: 815 QALIS-KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           Q +          ++ +  +E   +   +++  ++ +L +IG+ L +DDFGT  S L+YL
Sbjct: 374 QRIWWPANPLP--KLVVELTERDALPVIDQA--VVAQLHEIGVRLAIDDFGTGHSSLAYL 429

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +               +   +I +A+ +   ++A+ +        L   G
Sbjct: 430 KDLKPDVLKIDKIFTAAIGTDAINATVTDMVISLAQRLNIALVAEGVETAEQAHYLRERG 489

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
            D++Q    A P+        L++  
Sbjct: 490 VDHLQGYFYARPMPIEDFPAWLEQHQ 515


>gi|311696562|gb|ADP99435.1| sensory box/GGDEF family protein [marine bacterium HP15]
          Length = 645

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 173/446 (38%), Gaps = 24/446 (5%)

Query: 528 GILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAV 587
            I   +  D LTG+PN              +    + R  V+V  I     +    G   
Sbjct: 205 HIRRQSRTDPLTGLPNSNYL---------QTINSVDPRKNVIVCQIRDLGLVIAEYGNET 255

Query: 588 GDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINL 647
            ++V+ +  R++ + L   D L ++S   F +++ +  N       A    ++      +
Sbjct: 256 ANEVVQAFARKLAKGLGGGDELIQISQGEFLLLVKNHKNESS-ESLAARFIEATTFEWRI 314

Query: 648 LEREITVTASIGFASWTSSKITSSEM-LKNAELAMYHA-KHRGGNHVESFRVSSFRSDRV 705
            E  I +    G       +  +  +  + A  A+  A   R   ++ +  +     D  
Sbjct: 315 FETVIPIQGVFGVTVAGKDQSPAWGVRYQEAYRALAMAQMEREQLYISNENLEKRLRDER 374

Query: 706 MIKEDLCLAVENS----ELYLVYHPIIRLMDEE-IVGLEALIQWDHPKWGNISSSEFMLI 760
           +I   L   +        L +VY PI+   ++  I+G E L++      G +  +  + +
Sbjct: 375 IILNGLVRFLSGEPSSLSLSVVYQPIVNAGNKNFIIGAEVLLRCRDRVLGFVPPNVVVDL 434

Query: 761 AEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISK 820
           +E   +   +  ++  ++A++              + IN+    L D  L   +Q L+  
Sbjct: 435 SERHGLGADLGKWLFRQVAKETSQLYRDLGFRG-SLSINLNPAMLSD-SLVSDVQGLLVN 492

Query: 821 TLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDT 880
                S + +  +E     + ER   L+  L  +G++  LDDFGT  S L Y+  +  D 
Sbjct: 493 EGIPASALCMEITEDNAALDFERINELINELHTLGVTFALDDFGTGHSSLEYVRELKVDR 552

Query: 881 VKFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDS 938
           +K +   + G   +E ++  L SI+ MA+ +    + + +  +     + ++G   IQ  
Sbjct: 553 LKVDRCFVNGVEHSEDKLRFLGSIVAMAEQVYMKTVIEGVENQAQWDLIEKLGDVLIQGY 612

Query: 939 HVASPLGFNSILKLL---KERFPLVK 961
               P+ FN  + +L     R+P  +
Sbjct: 613 FAHKPMPFNEFMAVLMDSASRYPTTR 638


>gi|16759326|ref|NP_454943.1| rtn protein [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29142902|ref|NP_806244.1| rtn protein [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|25323366|pir||AI0544 probable rtn protein STY0376 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501617|emb|CAD08801.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138534|gb|AAO70104.1| putative rtn protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 524

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 696 RVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSS 755
               +   R+ +  ++   + ++E  + Y P+  +      G+EAL++W  P    I+  
Sbjct: 246 FYRRWYLKRLSLAREISRGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGRFITPD 305

Query: 756 EFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQ 815
            F+  AE   MI  ++  + E IA D+I+W         +I +NI+   L+D+   + ++
Sbjct: 306 IFITAAENEGMIIPLSRHLFELIAHDVINW---TVPDDFYISVNISPAHLMDDGFIQDIE 362

Query: 816 ALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGY 875
           AL  +T      + L  +E  ++  P +    L  LR+ G+ + +DDFGT    LSYL  
Sbjct: 363 AL--RTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKGVLIAIDDFGTGYCSLSYLQQ 420

Query: 876 IPFDTVKFNGSLMT--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
           +P D++K + + +    ++   + +L +II +++ +   ++A+ +  +  ++ +   G  
Sbjct: 421 LPVDSLKIDRTFIDTIDTSSDDVPVLDTIITLSQRLGLNVVAEGVSTQHQLRYILSHGVG 480

Query: 934 YIQDSHVASPLGFNSILKLL----KERFPLVK 961
           ++Q    A P+G N  +  L    + +  L+K
Sbjct: 481 FVQGFLYARPMGTNDFMSWLGKSAQRQNGLLK 512


>gi|134292602|ref|YP_001116338.1| diguanylate phosphodiesterase [Burkholderia vietnamiensis G4]
 gi|134135759|gb|ABO56873.1| diguanylate phosphodiesterase [Burkholderia vietnamiensis G4]
          Length = 548

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 6/250 (2%)

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R ++ + +  A++  EL++VY PI+ +     VG+EAL++W HPKWG I  + F+   E
Sbjct: 297 PRRLLLKAVRHALKRGELHVVYQPIVDVETRRTVGVEALLRWQHPKWGAIGPAAFVPEVE 356

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++  I  F+L     ++    D A   P+ I INIA +DL        +   I +  
Sbjct: 357 SSSILPKITEFVLRTAVSELA---DLAPSTPLRIAINIAPQDLERPRFVALVAEAIRR-- 411

Query: 823 YSPSR-IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
             P   + L  +E V++    R+  +   LR  G    +DDFGT  S L  L   PFD V
Sbjct: 412 LPPGCTLVLEVTERVLLEKNARTTEMFAALRATGAKFAIDDFGTHHSNLDLLSRFPFDYV 471

Query: 882 KFNGSLMTGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVA 941
           K +   ++  T     ++  I  +A++ + T+IA+ +  E   + L  +G  Y Q     
Sbjct: 472 KIDRQFISQLTTGNARLIEGIAALARHYDVTVIAEGVETEEQHRALRAVGVQYAQGFLYH 531

Query: 942 SPLGFNSILK 951
            P G  ++ +
Sbjct: 532 RPQGPENLKR 541


>gi|313899073|ref|ZP_07832600.1| PTS system, lactose/cellobiose family IIC component [Clostridium
           sp. HGF2]
 gi|312956272|gb|EFR37913.1| PTS system, lactose/cellobiose family IIC component [Clostridium
           sp. HGF2]
          Length = 696

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/295 (21%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 665 SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
                    ++  E  M   +  G           +      +  DL  A++ +++++ Y
Sbjct: 403 QQSEEFETAVRTMETDMAEGEANGALPDFLDDHYLYHFPAKTLAMDLKNAMQRNQIHMHY 462

Query: 725 HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIIS 784
                  +  I G EAL++W+HP  G ISS   + +AEE   +  + L++++   +D   
Sbjct: 463 QIQRDNAEH-IHGAEALLRWEHPVAGRISSPLMVKLAEEESFLDELGLYIIKEACKDAQK 521

Query: 785 WRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERS 844
            + +    P+ I +NI+ K L        ++ ++ +      ++ L  +E  ++    R 
Sbjct: 522 LQKEG--TPLSISVNISPKQLESAVFVREVRRILQEVDLHDIQLILEVTERSLLSTSGRI 579

Query: 845 RLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSI 902
              +  L+++GI +++DDFG   S + YL    FD VK +GSL+      E+   I+R I
Sbjct: 580 LERIRELKQLGIQMSMDDFGMGHSSMMYLQENAFDEVKLDGSLVRQILENERSRDIVRGI 639

Query: 903 IPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSI-LKLLKER 956
             +A +++  ++A+ +     ++ L  + CD  Q  +   P   +   +K LK+ 
Sbjct: 640 TRLAASMQFHVVAEFVETREQMELLKALHCDIYQGYYYGKPCSCDEFIIKYLKQE 694


>gi|300697690|ref|YP_003748351.1| hypothetical protein RCFBP_mp20538 [Ralstonia solanacearum
           CFBP2957]
 gi|299074414|emb|CBJ53964.1| conserved protein of unknown function, putative signal transduction
           protein eal domain [Ralstonia solanacearum CFBP2957]
          Length = 534

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 7/251 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           E L  A+E   +   +  ++ L D  + G E L +W     G +  + F+  AE   +I 
Sbjct: 10  ERLLDALERDAIEPAFQCLVDLRDHGLKGFEVLSRWTEADLGEVPPAVFIPAAERHGLID 69

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + + +L +  +   +W         F+  N++   L +  L   ++       +  +R+
Sbjct: 70  RLLVRVLSKACQAAAAW-----GGDFFLAFNLSPLQLQNTALFSLIRGAAESGRFPLARL 124

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
           ++  +ES ++G+   +  L+G L++ GI + LDDFG   S L  L    FD +K + S +
Sbjct: 125 QMEITESALVGDMGAAASLVGELQRAGIRIALDDFGIGFSNLERLQAFAFDKIKIDASFV 184

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                      I+ SII + +++   ++A+ +        L  +GC   Q      P+  
Sbjct: 185 QHMEGDSDSRKIVASIIGLGQSLGVDVVAEGVETRAQADILRGLGCGMGQGWLFGHPVPA 244

Query: 947 NSILKLLKERF 957
                 L+ RF
Sbjct: 245 PDAAATLQHRF 255



 Score = 90.8 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 386 VIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSM 445
           ++  V       + I    E    A   S DI W            P       ++    
Sbjct: 378 IMIDVTDQRRAERAIRESEEHFRRASDLSPDIAWAARPDGTVNYMGPTFGAARNMSVED- 436

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
              I  W   +H  DR   R    +++   +   + +FR++  D  +HW+  R RP   +
Sbjct: 437 --RIEAWYGIMHPEDRVRVRREWLAWLPCGQ-PFETDFRIQWPDGSWHWVNSRARPHYGA 493

Query: 506 NGDILRYIGIANDITEQKKSLEGILCN 532
           +G I R+ G+  DIT ++     I   
Sbjct: 494 DGTIDRWYGLIVDITGRRALERRIAVL 520


>gi|254000362|ref|YP_003052425.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Methylovorus sp. SIP3-4]
 gi|253987041|gb|ACT51898.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Methylovorus sp. SIP3-4]
          Length = 435

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 146/319 (45%), Gaps = 13/319 (4%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +++VL    F + +  +  R  +A+    D V   D+  +         ++ G +  
Sbjct: 120 IQTVENVLQRSVFERFMQQEKVRAEIALNSISDAVICTDMQGEVNYLNLAAESLTGWSRQ 179

Query: 444 SMHG-------PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
             +G        + N +  +H  D++    +L   +      L  +  +   D     + 
Sbjct: 180 EANGLPIVKVFQLINGVTRLH--DQNPVHRVLTQDITQG---LNPDTILIRRDGSEVAIE 234

Query: 497 IRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILD 556
             I P+ + +G +   + + +D++  +     +   A  D LT +PNR    DRL+  + 
Sbjct: 235 DSISPIHDGSGKLTGAVIVFHDVSAARAMASKMAHLAQHDYLTNLPNRMLLNDRLSQAIT 294

Query: 557 LSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNR 616
           L+      +  V+ +D+D +K+IND LG  VGD +L S+ +R+ EL++  D ++R  G+ 
Sbjct: 295 LAER-GTSQLAVLFMDLDNFKQINDTLGHVVGDAILQSVAKRLIELVRKSDTVSRQGGDE 353

Query: 617 FGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKN 676
           F +++    +    A  A  + +++  P  +  +E+ +TASIG + +      +  ++ +
Sbjct: 354 FLMLVDESKHGEDAALIASKILRALEKPHAIGGKELHLTASIGISLYPHDGRDAQTLINH 413

Query: 677 AELAMYHAKHRGGNHVESF 695
           A+ AMY AK +G N+ + F
Sbjct: 414 ADSAMYEAKKQGRNNFKFF 432


>gi|73541366|ref|YP_295886.1| EAL [Ralstonia eutropha JMP134]
 gi|72118779|gb|AAZ61042.1| EAL [Ralstonia eutropha JMP134]
          Length = 523

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 114/259 (44%), Gaps = 6/259 (2%)

Query: 703 DRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
            R  ++  L  AV+  ++ + + PII L D   VG EAL++W H     +S    + +A 
Sbjct: 265 HRFSLEWALRNAVKRRQISVHFQPIIALADPRCVGAEALLRWQH-NGEMVSPELLLSVAG 323

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTL 822
              ++  I   +L+ + +D+  W      P  ++ +N+  +DL      + + A +  T 
Sbjct: 324 RAGLMAQITDQVLDNVLQDLGDWLRS--HPDFYVSVNVDVQDLKARRFLDVLSARLPGTG 381

Query: 823 YSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVK 882
               +I++  +E   +   E +R ++   R  G  + +DDFGT  S LSYL     D +K
Sbjct: 382 IGARQIRIEITEHAFLE-AEAARGIIQAFRDAGHPVYIDDFGTGYSSLSYLQNFKVDALK 440

Query: 883 FNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHV 940
            + S          +  +   II MA  +   ++A+ +  E   + L   G  Y Q    
Sbjct: 441 IDKSFTDTIGRDAASSTVAPHIISMAHELGFEVVAEGVEHEAQARYLKEHGAQYAQGWLY 500

Query: 941 ASPLGFNSILKLLKERFPL 959
           +  L  ++++  L+   P+
Sbjct: 501 SRALPADALVGFLERWHPV 519


>gi|24215527|ref|NP_713008.1| signal transduction protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657087|ref|YP_001173.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24196668|gb|AAN50026.1| signal transduction protein containing REC and EAL domains
           [Leptospira interrogans serovar Lai str. 56601]
 gi|45600324|gb|AAS69810.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 404

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE-ELCMI 767
           E++   +  ++  L Y P I      + G E+L++W HP+ G I    F+   E    ++
Sbjct: 154 EEIEQGIRENQFVLFYQPKIDFKTGTVSGFESLVRWSHPERGLIFPDAFIPTLELYPSLM 213

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
            A+   ++ +       W  Q     I + +N++   +    L E +  +I       ++
Sbjct: 214 DAMTEKLILQALSQCSIWNKQFPG--IAVAVNVSPVSMNKLILPETIAKMIENFGLKNNQ 271

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +E+ ++ N   +  +L R+R  GI L++DDFG   S L  +   PF  +K + S 
Sbjct: 272 LIVEVTETQLLENMTSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRYPFTELKIDRSF 331

Query: 888 MTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           ++ +   + A  I ++ I +   +  T++A+ I      + + + GCD  Q    + P+ 
Sbjct: 332 VSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAEVGELMKQQGCDKGQGYFYSKPMP 391

Query: 946 FNSILKLLK 954
            NS L+ L 
Sbjct: 392 ANSTLQFLA 400


>gi|322433238|ref|YP_004210459.1| diguanylate phosphodiesterase [Acidobacterium sp. MP5ACTX9]
 gi|321165630|gb|ADW71332.1| diguanylate phosphodiesterase [Acidobacterium sp. MP5ACTX9]
          Length = 543

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 7/258 (2%)

Query: 708 KEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMI 767
              +   ++  EL   + P+  L    +   E L +W HP  G I  S  + +AE   ++
Sbjct: 5   ASTVEEILDKDELVPCFQPLRELRTGRLTSFEVLARWAHPTRGLILPSNLIEVAEREGLL 64

Query: 768 KAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR 827
             +   +L +      +       P I + IN++ + L D  L   +  +  ++ +S  R
Sbjct: 65  TRLTKQLLHKAFDTTKTL-----SPSITLAINVSPQQLRDVTLANQIAEIARRSEFSLDR 119

Query: 828 IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSL 887
           + +  +E  ++ N   ++ +   L+ +G  L LDDFGT  S L +L  + FD +K +   
Sbjct: 120 LTIEITEDALIDNQRLAKTITQELKGLGCQLVLDDFGTGYSSLRHLHTLRFDGLKIDRCF 179

Query: 888 MTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLG 945
           +  +  + +   I+ ++I + +++  T +A+ I  E     L  +GCD  Q      P  
Sbjct: 180 IVDALESRESRKIVAAMIGLGQSLNMTTVAEGIESEEQASLLLYLGCDVGQGWLYGKPAP 239

Query: 946 FNSILKLLKERFPLVKNT 963
             SI +++  +    K +
Sbjct: 240 AISIPQVVASKPTPPKPS 257



 Score = 84.2 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 381 LIGFTVIQHVLATGYFSQ-GIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILG 439
           +IG  +    +     SQ  +    ER  + V  +    +  D              + G
Sbjct: 381 VIGICMAALDITDRQRSQVALQESEERFRMIVDLNPQAPFIMDPDGCITDFGVAFEELTG 440

Query: 440 LASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRI 499
            +   + G  R +L  +H +D      ++   +      +  E+R +  +    W+  R 
Sbjct: 441 FSREEIMG--RGFLEVVHPDDVARVSLVIAETISCGAA-MDVEWRAQRHNGYHLWLRSRA 497

Query: 500 RPMSNSNGDILRYIGIANDITEQKKS 525
            P+ +  G ++ Y G   +I   K  
Sbjct: 498 TPVFSLAGKLIHYCGSTENINHLKLL 523



 Score = 41.1 bits (95), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 42/145 (28%), Gaps = 4/145 (2%)

Query: 383 GFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS 442
            + +                   +      GS   +         V+     A + G  +
Sbjct: 257 SWALAADSADPRSLEMLPMQRVAQLQAIYDGSPIGLCFLSRDLRYVSVNRQFAVMNGTTA 316

Query: 443 GSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRR-GRLQYEFRVRAADNQFHWMIIRIRP 501
            ++ G     +  ++      +   L   +      ++      R  +     + I   P
Sbjct: 317 CALIGLT---VASVYPEWYPLYEPYLKRALAGEVLSKITVTRPARNTNEIAQDIEISYAP 373

Query: 502 MSNSNGDILRYIGIANDITEQKKSL 526
             +  G+++     A DIT++++S 
Sbjct: 374 ARDEGGEVIGICMAALDITDRQRSQ 398


>gi|15801017|ref|NP_287033.1| hypothetical protein Z1528 [Escherichia coli O157:H7 EDL933]
 gi|254792284|ref|YP_003077121.1| hypothetical protein ECSP_1197 [Escherichia coli O157:H7 str.
           TW14359]
 gi|291282023|ref|YP_003498841.1| Rtn-like protein [Escherichia coli O55:H7 str. CB9615]
 gi|12514391|gb|AAG55644.1|AE005302_7 hypothetical protein Z1528 [Escherichia coli O157:H7 str. EDL933]
 gi|254591684|gb|ACT71045.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|290761896|gb|ADD55857.1| Rtn-like protein [Escherichia coli O55:H7 str. CB9615]
          Length = 536

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 694 SFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNIS 753
            F    + S ++ + E++   + + E  + Y P+     +  +G+EAL++W      NIS
Sbjct: 276 YFLWQRWISRKMSLAEEIKKGMSSGEFSVHYQPVCDTTTKACLGVEALMRWQREDGKNIS 335

Query: 754 SSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEG 813
              F+  AEE  +I  +   + E I +D+ SW+      P  + INIA++ L   +    
Sbjct: 336 PVVFIRAAEEENLIIPLTKHLFELIIQDVQSWK---VKKPFHLGINIAAEHLAHPDFVAD 392

Query: 814 MQALISKTLY-SPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
           +  +  K        I L  +E  ++ + + +   +  LR  G    +DDFGT    L  
Sbjct: 393 VLHI--KNAISDKFNIVLEITERNLVEDTDHALQKINELRSHGCEFAVDDFGTGYCSLGL 450

Query: 873 LGYIPFDTVKFNGSLMTGST--EKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D +K + S +   T  E    +L  II ++  +    IA+ +      + L   
Sbjct: 451 LQKLSVDYLKIDKSFIDTLTTAEDETPVLDIIIKLSNRLNLITIAEGVSTSHQAEYLIHN 510

Query: 931 GCDYIQDSHVASPLGFNSILKLLKER 956
               +Q    A P+      +    R
Sbjct: 511 NVTLVQGYLYAKPMKATEFYQWYVNR 536


>gi|302878922|ref|YP_003847486.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
 gi|302581711|gb|ADL55722.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
           capsiferriformans ES-2]
          Length = 564

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/312 (27%), Positives = 142/312 (45%), Gaps = 11/312 (3%)

Query: 395 YFSQGIFSDGERQSLA---VLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHG-PIR 450
             S+ +++  +   LA      + D +   D     V   P    I G     + G   R
Sbjct: 258 QMSESLYNSEKSMRLASSIYQSNADAIVVTDENNLIVDVNPAFTRITGYTLDEVRGKNPR 317

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDIL 510
                 H  D   +R +  + +    G  Q E   +  D   +   + I  + + +G I 
Sbjct: 318 LMQSGQH--DIQFYRKMWRAIIDQ--GHWQGEIWDKRRDGGLYAKSVNIIALRHQDGSIY 373

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R++   +DITE+K+  E I   A  D LT +PNR+ F DRL   + L+   + L   +  
Sbjct: 374 RFVAQFSDITEKKQKDELIHWQANYDPLTNLPNRRLFQDRLNQAIKLAHRTE-LPLALFF 432

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K+IND LG A GD +L+ + RRI   ++  D +ARL G+ F +IL   +++ +I
Sbjct: 433 IDLDYFKEINDTLGHANGDVLLMEVARRISSCVREADTVARLGGDEFTVILPELSDATQI 492

Query: 631 ADFAIAMRKSIAMPINL--LEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRG 688
              A  +   ++ P      E    V+ASIG A++    + +  ++K A+ AMY AK  G
Sbjct: 493 LRVAKNIVDKLSQPFFFVNDETGYHVSASIGIANYPQDAMDTKGLIKCADKAMYAAKSEG 552

Query: 689 GNHVESFRVSSF 700
            N    F  S  
Sbjct: 553 RNRFVYFSNSGQ 564


>gi|254283047|ref|ZP_04958015.1| EAL domain protein [gamma proteobacterium NOR51-B]
 gi|219679250|gb|EED35599.1| EAL domain protein [gamma proteobacterium NOR51-B]
          Length = 528

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 116/259 (44%), Gaps = 5/259 (1%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
                  + +  +L  A+++  +  VY PI+ L     VG E L +W+      I    F
Sbjct: 270 KHLSKRHLSLTAELRSAIDHDGIDAVYQPIVDLNTGRCVGAEILARWERSDGEMIRPDLF 329

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           + IAE+  +I  I   +  R   D+     +     + I +N++  DL DN + + ++  
Sbjct: 330 VAIAEQQGIIGGITHNVFRRAIGDLGKLLRK--QSDLRINLNLSPLDLEDNAIADLLETE 387

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
           + K     +  KL  +E  ++ + E +R L+  LR+ G  + +DDFGT  S LSYL    
Sbjct: 388 LRKARLPAATFKLEITERGLI-DSEEARALISALRQRGHQIAIDDFGTGYSSLSYLESFE 446

Query: 878 FDTVKFNGSLMTGSTEKR--IAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            DT+K + + +     +    +++  +I MA+++E  ++A+ I  E   + L   G    
Sbjct: 447 LDTLKLDKAFVDAIETRAVTSSVIPHVIEMARSLELDMVAEGIESEHQAQWLREQGVQMG 506

Query: 936 QDSHVASPLGFNSILKLLK 954
           Q    + PL        LK
Sbjct: 507 QGYLYSKPLSAADFKAYLK 525


>gi|239625938|ref|ZP_04668969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520168|gb|EEQ60034.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1254

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/318 (23%), Positives = 142/318 (44%), Gaps = 4/318 (1%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
           ++V+  +  T +  + +    ER  + +  + DI ++WD+  D V  + +  T  G    
Sbjct: 624 YSVVIDINQTKHAQEELRLGLERYKIVMEQTNDIFFEWDVETDTVAYSSNWKTKFGYDPI 683

Query: 444 SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
           S     R   + ++H  D   F   +      RR   + EF+V  +  ++ W  +R    
Sbjct: 684 STRASERIPKISHLHPEDMAPFGAFIKEMRSGRRYG-ELEFKVSDSRGRYQWCKLRATMQ 742

Query: 503 SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
            +  G   + IGI  DI ++K + + +   A +D LT + N+ S   R+  +L     ++
Sbjct: 743 FDDQGRPCKAIGIVIDINDEKMAAQELKARAERDTLTKLYNKASARQRIEYML--VNREE 800

Query: 563 NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                + +IDID +K +ND+ G   GD VL  +  ++  L +  DI++R+ G+ F  +L 
Sbjct: 801 GEGLALFIIDIDNFKLVNDMYGHMFGDAVLTKIAAQLSRLFRSSDIVSRIGGDEFMALLQ 860

Query: 623 SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
              N  ++   A  + +     +  L +E ++T S G A           + + A++A+Y
Sbjct: 861 GVLNGDQVRVVADRILECFDRVLEELPKECSITCSTGIAVCPEDGEDFQTLFQKADVALY 920

Query: 683 HAKHRGGNHVESFRVSSF 700
           HAK  G    + +  S  
Sbjct: 921 HAKACGKKQYQIYEQSME 938



 Score = 66.1 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 423 IVRDRVTTTPDIATIL-------GLASGSMHGPI-RNWLPYIHINDRDNFRTILDSFVGY 474
           +            TIL       G    ++       +L  IH  DR   +  L   +  
Sbjct: 528 LKGISRYRNDQWFTILDIDDGFMGYGRDAIRSKFNDRYLEIIHPEDRGRVKKELLDQL-N 586

Query: 475 RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGIL 530
           R    + E RV  AD   +W++ +   M++ +G       +  DI + K + E + 
Sbjct: 587 RGSEFELEHRVIDADGCINWVLTKGCLMTDRSGQ-EYLYSVVIDINQTKHAQEELR 641


>gi|188535408|ref|YP_001909205.1| Putative rtn protein, unknown function [Erwinia tasmaniensis
           Et1/99]
 gi|188030450|emb|CAO98344.1| Putative rtn protein, unknown function [Erwinia tasmaniensis
           Et1/99]
          Length = 523

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L   +   E  + Y P+  L++ ++ G+EAL++W       +    F+  AE   MI  
Sbjct: 270 ELRRGMAFGEFSVHYQPVCNLVNGQLAGVEALMRWQRSDGSWVRPDIFIAAAEAEGMIVQ 329

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIK 829
           +   +L+ IA+D  SW+         I IN+A+  L   +  + ++       +    I 
Sbjct: 330 LTRHLLQLIAKDCASWK---VPAGFHIGINVAADHLQHEDFVKDIRGFSQNIAHLLPTIT 386

Query: 830 LSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMT 889
           L  +E  ++   +     L  LR  GI + +DDFGT    L+YL   P D +K + S + 
Sbjct: 387 LELTERSLISEGDLVAHRLAELRSEGIRVAIDDFGTGHCSLTYLQTFPLDYLKIDKSFVN 446

Query: 890 GSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFN 947
                     IL +II +A  +   ++A+ I   + ++ L   G  +IQ  + A PL   
Sbjct: 447 AIESADGETPILDTIIQLAHRLALQVVAEGIETPLQMEYLKNHGVVFIQGFYYARPLSSA 506

Query: 948 SILKLLKERFPLVKN 962
           +++  +++  P   +
Sbjct: 507 ALMVWIEQNPPPDTS 521


>gi|206579497|ref|YP_002240979.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|290512367|ref|ZP_06551734.1| yjcC [Klebsiella sp. 1_1_55]
 gi|206568555|gb|ACI10331.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Klebsiella pneumoniae 342]
 gi|289775362|gb|EFD83363.1| yjcC [Klebsiella sp. 1_1_55]
          Length = 534

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 112/268 (41%), Gaps = 5/268 (1%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
            +  R      +  L  A+   +L L Y PII + +   VG EAL++W       ++ +E
Sbjct: 261 WTRTRRQYHSPRNMLQRALSCRQLRLHYQPIIDIKNNRCVGAEALLRWPGFDGPVMNPAE 320

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+ +AE   MI  I  ++++ +  ++  +      P +++ IN+++ D     L   +  
Sbjct: 321 FIPLAENEGMIAQITDYVVDELFYEMGEFLAS--HPQLYVAINLSASDFHSARLISQISE 378

Query: 817 LISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYI 876
                     +IK+  +E   + +  ++  ++   R+ G  + +DDFGT  S L  L  +
Sbjct: 379 KAHSYAVCIGQIKIEVTERGFI-DVAKTTPVIQAFREAGYEIAIDDFGTGYSNLHNLHAL 437

Query: 877 PFDTVKFNGSLMTGSTEKRIA--ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDY 934
             D +K + + +   T    +  I   II MA+ +    IA+ +     +  L + G  +
Sbjct: 438 NVDILKIDKTFVDTLTTNNTSHLIAEHIIEMARGLRLKTIAEGVETPEQVSWLYKRGVQF 497

Query: 935 IQDSHVASPLGFNSILKLLKERFPLVKN 962
            Q    A  +     ++ L      +  
Sbjct: 498 CQGWLFAKAMPAREFMQWLANAPTPISR 525


>gi|331676130|ref|ZP_08376842.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H591]
 gi|331076188|gb|EGI47470.1| putative cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Escherichia coli H591]
          Length = 518

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+EN ++ + Y PI+ L + +IVG EAL +W       +S   F+ +A++  + +
Sbjct: 275 HRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSE 334

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + L ++  +  D+  W  Q       I IN+    L   ++ + ++ +I+    +P +I
Sbjct: 335 PLTLLIIRSVFEDMGDWLRQHPQQ--HISINLEPTVLTSEKIPQLLREMINHYQVNPRQI 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R+ G  + LDDFGT  S LSYL  +  D +K + S +
Sbjct: 393 ALELTEREF-ADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFV 451

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    +  L    
Sbjct: 452 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKED 509

Query: 949 ILKLLKERF 957
            L+  ++  
Sbjct: 510 FLRWAEQHL 518


>gi|330830443|ref|YP_004393395.1| PAS:GGDEF domain-containing protein [Aeromonas veronii B565]
 gi|328805579|gb|AEB50778.1| PAS:GGDEF domain protein [Aeromonas veronii B565]
          Length = 804

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 142/356 (39%), Gaps = 16/356 (4%)

Query: 362 LDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDW 421
           +   ++    +  L+ I + +   + Q        ++ +    +        S D++W  
Sbjct: 321 VAVAMLITFTLMTLLGIFLHLYLRLRQEARDRQRLTRELAQSEQHYRFVAENSADVIWTM 380

Query: 422 DIVR-DRVTTTPDIATILGLASGSMHGPIRNWLPYIHIND-----RDNFRTILDSFVGYR 475
           D         +P I  + G  +  +       L  +  +      R+     L+++    
Sbjct: 381 DAASLRFRYVSPAITPLSGYEAPELFALP---LKQLLPDASRQLLREEISATLEAWQRGE 437

Query: 476 RGRLQYEFR--VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNA 533
             + +   R  +R  D              N N      +G+  DITE+    E +   A
Sbjct: 438 HDQTRRVIRTQLRHKDGHLVATETITTLHGNHNAQPEAILGVTRDITERAAREEMMRRLA 497

Query: 534 FQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLV 593
           F D LTG+PNR+    RL  +++           +M ID+D +K IND  G   GD +L 
Sbjct: 498 FYDPLTGLPNRRLLQQRLKELMEQETPRP---LALMFIDLDHFKPINDTFGHETGDILLN 554

Query: 594 SLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREIT 653
            +  R+   ++  D++ARL G+ F I+L    +   +   A  + + +  P  L  +E+ 
Sbjct: 555 MVAERMSHCVRKQDLVARLGGDEFVILLPDSGDE--VLAVADKLHQQLRHPFQLEGQELL 612

Query: 654 VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKE 709
           +++SIG A +      +  ++ +A+ AMY AK+RG   V  +          ++ +
Sbjct: 613 ISSSIGLALYPEHGEDAKTLMHHADQAMYQAKNRGRGRVCLYTEGLDPEQGALLWQ 668


>gi|320176483|gb|EFW51532.1| Heme-regulated cyclic AMP phosphodiesterase [Shigella dysenteriae
           CDC 74-1112]
          Length = 744

 Score =  251 bits (641), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 181/424 (42%), Gaps = 36/424 (8%)

Query: 446 HGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
           +G   +W    H  +  N      + +  R G      +++ +                 
Sbjct: 311 NGMPIHWASSSHGAEVQNA-QSWSATIRQRDGAPAGILQIKTSSGA-------------- 355

Query: 506 NGDILRYIGIANDIT--------EQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDL 557
             +   +I    DI+        EQ+KS + I      D +TG+PNR +  + L  ++D 
Sbjct: 356 --ETSAFIERVADISQHMATLALEQEKSRQHIEQLIQFDPMTGLPNRNNLHNYLDDLVDK 413

Query: 558 SATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRF 617
           +     + P V +I +D  + + D LG A  D  L+ +  R    LK    L R+ G +F
Sbjct: 414 A-----VSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRIEGTQF 468

Query: 618 GIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNA 677
             ++  EN+   I   A  +R  ++ PI + ++   +T SIG +           +L  A
Sbjct: 469 V-LVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISY--DVGKNRDYLLSTA 525

Query: 678 ELAMYHAKHRGGNHVESFRVSSFRSDRVMIK--EDLCLAVENSELYLVYHPIIRLMDEEI 735
             A+ + +  GGN  + F  +     +  +     L  A+ N++L LVY P I     E+
Sbjct: 526 HNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIFAETGEL 585

Query: 736 VGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIF 795
            G+EAL +W  P+ G++  S F+ +AEE+  I+ I  +++    R +  WR Q    P  
Sbjct: 586 YGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPA- 644

Query: 796 ILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIG 855
           + +N+++     N+L   +   +        ++ +  +ES++M +       +  LR +G
Sbjct: 645 LSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMG 704

Query: 856 ISLT 859
           + L+
Sbjct: 705 VGLS 708



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 389 HVLATGYFSQGIFSDGERQSL--AVLGSGDIVWDWDIVRDRVTTTPDIATILGL------ 440
           ++      S  +    + + L  AV      V   D  R  V        + G       
Sbjct: 126 YLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQCNRAFTEMFGYCMFGYC 185

Query: 441 --ASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIR 498
              +  M       +P    ++R   + +L      +  R Q EF +     +  W+   
Sbjct: 186 ISEASGMQPDTLLNIPEFPADNRIRLQQLLW-----KTARDQDEFLLLTRTGEKIWIKAS 240

Query: 499 IRPMSNSNGDILRYIGIANDITEQKKSLE 527
           I P+ +    +   +   +DITE+++  +
Sbjct: 241 ISPVYDVLAHLQNLVMTFSDITEERQIRQ 269



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 410 AVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILD 469
           A+  +       +   + +   P    + G     + G   + L  I  + R      + 
Sbjct: 25  ALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML--IPRDLRPAHPEYIR 82

Query: 470 SFVGYRRGRLQY---EFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSL 526
                 + R++    E ++   D    W    +  + ++ G +  Y+ +  D + +    
Sbjct: 83  HNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQK 140

Query: 527 EGILCN 532
           E     
Sbjct: 141 EQTRQL 146


>gi|330828071|ref|YP_004391023.1| EAL domain-containing protein [Aeromonas veronii B565]
 gi|328803207|gb|AEB48406.1| EAL domain protein [Aeromonas veronii B565]
          Length = 528

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 112/251 (44%), Gaps = 6/251 (2%)

Query: 710 DLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKA 769
           +L  A+   E      P+I   D +++G E L++W+H   G I    F+  AEE  +I  
Sbjct: 264 ELRRALRAREFVPYLQPLIASHDGKMMGAEVLMRWEHVNEGVIRPDLFIPQAEESGLIVP 323

Query: 770 INLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSR-I 828
           +   +++++A  +   ++Q       I  NI++    D  L    +A +          +
Sbjct: 324 MTTHIMKQVATRLNRSQEQLPD-GFHISFNISAAHCHDFALLAECRAFLGHF-LPGKVVL 381

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E  ++ +  ++  L  +L ++G+ L +DDFGT  S L+YL     D +K + S +
Sbjct: 382 VLELTERELLMSDPQTLSLFRQLDEMGVKLAIDDFGTGHSSLAYLQQFHVDYLKIDKSFI 441

Query: 889 TGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                +     I+ ++I +A  +   ++A+ +  E     L   G DY+Q    A P+  
Sbjct: 442 ARIGTESLSEHIVDNVIDLATRLGLALVAEGVESERQADYLRAKGVDYLQGYLFARPMPL 501

Query: 947 NSI-LKLLKER 956
                +LL E 
Sbjct: 502 RQFCEELLPEE 512


>gi|218509499|ref|ZP_03507377.1| putative signal-transducer protein [Rhizobium etli Brasil 5]
          Length = 231

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 731 MDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQAN 790
             ++I G EALI+W+HP  G +S  +F+ +AEE+ +I  I  ++L +   D   W +   
Sbjct: 1   SKQQICGFEALIRWNHPIRGRVSPIDFIPLAEEVGLIVGIGRWVLRQACSDAAQWPE--- 57

Query: 791 MPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGR 850
              I + +N+++     ++L + +   ++     PSR++L  +ESV+M N      +L  
Sbjct: 58  --GIKVAVNVSAIQFSGSDLMQDVSDALAAAALLPSRLELEITESVLMENLSEVLPILHA 115

Query: 851 LRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKN 908
           L++ GI +++DDFGT  S LSYL   PFD +K + S +      ++  AI+ +II +   
Sbjct: 116 LKERGIRISMDDFGTGYSSLSYLSSFPFDKIKIDKSFVNDIVDNKEAHAIMHAIILLGDA 175

Query: 909 IETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLK 954
           +   +  + +     +  L    CD IQ  H++ P     +  LL 
Sbjct: 176 LGMRVTVEGVETAAQLALLECEECDEIQGYHISPPRPVRDVQHLLS 221


>gi|206602313|gb|EDZ38794.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Leptospirillum sp. Group II '5-way CG']
          Length = 1449

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 96/582 (16%), Positives = 211/582 (36%), Gaps = 41/582 (7%)

Query: 368  QPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR 427
              A     +   +L     +   LA  +  +        Q +A       ++        
Sbjct: 731  ISAFSETALDSTLLSLMEDLSDKLAIAFLHESEQRQIRLQKIATEAVDTPLFIAGPGGTF 790

Query: 428  VTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV---GYRRGRLQYEFR 484
                       G +   +      +        +      L++ +            E+ 
Sbjct: 791  EWANKAYLDSKGCSFEEIPDFPGYYFSR-----QTGRTFSLENPLWKTLRAGETYIQEYT 845

Query: 485  VRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNR 544
                  + + + IRI P+   + ++L  + I  +++++K+  E +   A+ D LT + NR
Sbjct: 846  SLRKGGESYPVEIRISPVFGEDRELLHMVCIEKNLSDRKQEEEELRKKAYFDPLTHLANR 905

Query: 545  QSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLK 604
                  L+  ++++  + N+   V+ +D+D +K++ND  G   GD +LV +  R+ +L++
Sbjct: 906  HLMEGELSRSIEVARRN-NMSMAVLFLDLDGFKEVNDNHGHEFGDKLLVHVAGRLEKLIR 964

Query: 605  FPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWT 664
              D+++RL G+ F +IL +  N  ++   A  +   I  P  +  + + +  SIG + + 
Sbjct: 965  HGDLVSRLGGDEFVVILNNIRNPAEVRAAAGRILAGIQAPYLIDGQTMIIGTSIGISVYP 1024

Query: 665  SSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDRVMIKEDLCLAVENSELYLVY 724
            +     S +L+ A+ AMY AK+RG N+   +   S   +               E     
Sbjct: 1025 NEDKDPSSLLREADQAMYLAKNRGKNNFVLYTPPSEEINDGQTGIPKESFPSLPERLFTL 1084

Query: 725  HPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAINL--FMLERIARDI 782
             P+  L   EI G  +L      +             E+   I          E      
Sbjct: 1085 APVRSLNSGEIAGF-SLSTAQSERQTLYG--------EDAGRILPYEEKKRFFEHARNVW 1135

Query: 783  ISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPE 842
             + +       + I   +++  +++ +       ++        R       S+      
Sbjct: 1136 ENIQHTYPGAFLKIS--LSAHQVMEADFFSVFSLVLGDLG-PEER-------SLFFIGLH 1185

Query: 843  RSRLL---------LGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTE 893
             +            + RL + G ++  +  G + + L  L Y+P   ++ +G+L+     
Sbjct: 1186 GNIPFPGTYGQDNSISRLTEEGFAIGTERVGDQGNTLFQLRYLPVRFLEVSGTLIRDMAH 1245

Query: 894  --KRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCD 933
                +A+L SI  +  +++  +I   +        L R+G D
Sbjct: 1246 EANDLAVLGSIFLLGSSLDKKLIVPGVEDIETALILKRLGFD 1287



 Score = 49.2 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 8/152 (5%)

Query: 384 FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
              +          Q +          V   G+ V + D   + ++       +LG  S 
Sbjct: 322 VATLDDRTEESRLRQDLEFSRNHLHTLVRHLGEGVMEIDPQGNVLSLNATGERLLGFRSE 381

Query: 444 SMHGPIRNWLPYIHI-------NDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMI 496
            + G   + L             + D   + + + +            ++  D       
Sbjct: 382 DLSGSAAHPLFVKAPSVFGDPGEESDFLHSRIRASLVSSEPVETESCFLKKRDGSLLACS 441

Query: 497 IRIRPMS-NSNGDILRYIGIANDITEQKKSLE 527
           +   P+  +S G++   + I  DI  +++  +
Sbjct: 442 LLFTPIYTSSGGNLKELVVIFRDIGPRRRLQK 473


>gi|239908877|ref|YP_002955619.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
 gi|239798744|dbj|BAH77733.1| GGDEF domain protein [Desulfovibrio magneticus RS-1]
          Length = 340

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 119/309 (38%), Gaps = 5/309 (1%)

Query: 388 QHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTT---PDIATILGLASGS 444
                     + +    ER    +    D V+   +   R   T   P+   + G  +  
Sbjct: 24  AERDRLQETERVLRQGEERYRRLLESVTDYVYTVTVQGGRAVATDHGPNCEAVTGYTADE 83

Query: 445 MHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSN 504
                  WL      DR          +        +E R+   D     +        +
Sbjct: 84  YRANPMLWLDMAPPEDRPLVLENAARLLAGEDTG-PFEHRIIHKDGTVRHVRNTPVLRFD 142

Query: 505 SNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNL 564
           + G ++ Y GI NDITE+K++ E     +  D LTG+P R  ++DRL   +  +   +  
Sbjct: 143 AAGQLVAYDGIINDITERKRAEELFTRLSLHDGLTGLPGRALYMDRLRQAIGQAERREE- 201

Query: 565 RPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISE 624
           R  V  ID+D++K++ND  G  VGD VL    +RI   ++  D +ARL G+ F  +    
Sbjct: 202 RVAVYFIDLDRFKEVNDAHGHEVGDVVLAMAAKRIAGCVRRSDTVARLGGDEFVAVTPGI 261

Query: 625 NNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHA 684
                    A  M  ++A P         +  S+G A +        E+L+ A+ AMY A
Sbjct: 262 GEPDNATAIAAKMVSALAEPFEARGAVCRLGGSVGVAFYPDDATRGGELLRLADAAMYAA 321

Query: 685 KHRGGNHVE 693
           K  G N   
Sbjct: 322 KKAGRNGWR 330


>gi|315616601|gb|EFU97218.1| EAL domain protein [Escherichia coli 3431]
          Length = 498

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+EN ++ + Y PI+ L + +IVG EAL +W       +S   F+ +A++  + +
Sbjct: 255 HRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSE 314

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + L ++  +  D+  W  Q       I IN+ S  L   ++ + ++ +I+    +P +I
Sbjct: 315 PLTLLIIRSVFEDMGDWLRQHPQQ--HISINLESPVLTSEKIPQLLRDMINHYQVNPRQI 372

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R+ G  + LDDFGT  S LSYL  +  D +K + S +
Sbjct: 373 ALELTEREF-ADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFV 431

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    +  L    
Sbjct: 432 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKED 489

Query: 949 ILKLLKERF 957
            L+  ++  
Sbjct: 490 FLRWAEQHL 498


>gi|82542947|ref|YP_406894.1| hypothetical protein SBO_0353 [Shigella boydii Sb227]
 gi|81244358|gb|ABB65066.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320182780|gb|EFW57661.1| hypothetical protein ylaB [Shigella flexneri CDC 796-83]
 gi|332098687|gb|EGJ03653.1| EAL domain protein [Shigella boydii 3594-74]
          Length = 498

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+EN ++ + Y PI+ L + +IVG EAL +W       +S   F+ +A++  + +
Sbjct: 255 HRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSE 314

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + L ++  +  D+  W  Q       I IN+ S  L   ++ + ++ +I+    +P +I
Sbjct: 315 PLTLLIIRSVFEDMGDWLRQHPQQ--HISINLESTVLTSEKIPQLLREMINHYQVNPRQI 372

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R+ G  + LDDFGT  S LSYL  +  D +K + S +
Sbjct: 373 ALELTEREF-ADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFV 431

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    +  L    
Sbjct: 432 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKED 489

Query: 949 ILKLLKERF 957
            L+  ++  
Sbjct: 490 FLRWAEQHL 498


>gi|77747503|ref|NP_297760.2| hypothetical protein XF0470 [Xylella fastidiosa 9a5c]
          Length = 522

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A++  E ++ Y PI+ L D   VG EAL++W       I   +F+ +AE   +I 
Sbjct: 269 TRLRQAIQRCEFFVCYQPIVSLSDGRCVGAEALVRWRQQDGTLILPDQFIPLAERSGLIL 328

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            I   ++    R++           + I IN++ KD+    L + +   +  T     ++
Sbjct: 329 PITDQVIAASMRELGPL--LVADRSLHIAINVSVKDIESGRLLDVLALALQDTGLYRKQL 386

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E   M +   +R  + RLR+ G ++ +DDFGT  S L YL  +P D +K + S +
Sbjct: 387 WIEATERSFM-DARAAREHIVRLREAGYAVVIDDFGTGYSNLQYLQQLPLDALKIDKSFI 445

Query: 889 T--GSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
              G      A+   II +AK +    IA+ +  E  +  L   G D  Q    +SPL  
Sbjct: 446 DTVGRDVTNTAVASHIIDIAKELGMRTIAEGVEREEQLTYLRARGVDMAQGWLFSSPLSA 505

Query: 947 NSILKLLKE 955
              +  L  
Sbjct: 506 AEFVDYLAR 514


>gi|254447257|ref|ZP_05060724.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [gamma proteobacterium HTCC5015]
 gi|198263396|gb|EDY87674.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor, putative
           [gamma proteobacterium HTCC5015]
          Length = 689

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/560 (18%), Positives = 201/560 (35%), Gaps = 29/560 (5%)

Query: 402 SDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHGPIRNWLPYIHIND 460
              ER +  +  S D +  +      V          G  S   + G     +     ++
Sbjct: 133 ESEERNASLLDSSRDAI-AYVHEGMHVYANRSYLEQFGYESFDDLEGLPIMDMVV---DE 188

Query: 461 RDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHW--MIIRIRPMSNSNGDILRYIGIAND 518
           + N        +      + Y   +  AD              + +     +      ++
Sbjct: 189 KQNDLKNFLRTLDTEDHAVHYNTDIVLADGSVMDSDFEFSSASIDDEPCTQIIIRKQESN 248

Query: 519 ITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKK 578
               K+    +   A  D  TG+ NR  F++ L  +L     D         I ID + K
Sbjct: 249 ANA-KELEAQLSKMARIDPNTGLLNRNVFVEELENVLASIG-DSGQEYAYFHISIDNFDK 306

Query: 579 INDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMR 638
             + LG+   D ++  +   I E L    +  R  G  F  ++  ++ +  I   A A+ 
Sbjct: 307 YTEELGVVGSDKIIQGVASGIKETLGDSAVACRYDGQIFSHLISLKDRASDIKQRAEALL 366

Query: 639 KSIAM-PINLLEREIT-VTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFR 696
           K++    +   ++E   ++ SIG +      + S+E++     A+  A   GGN  E +R
Sbjct: 367 KAVKNLTLEAGDKEWNELSLSIGVSLIDDPSLRSTEVINRGSKAVKTAAEAGGNRYEVYR 426

Query: 697 VSSFRSDRVMIKEDLC----LAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
                     +++        A++ +  YL Y P+++L   E+   E L++       ++
Sbjct: 427 PKEGEMTEKQMEKAWREKIDHAIKENRFYLAYQPMVKLDGGELERYEVLLRMRDEHGTDV 486

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S  EF+  AE     K I+ +++    +D++    + +   + I   ++   L D EL  
Sbjct: 487 SPGEFLSAAESTGQAKDIDRWVITNAFKDLVEQFKKGHKTILLIK--LSDTSLKDKELFP 544

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            ++  +  +    + +     E  V  N  ++R     +  IG    +DDFG     LS 
Sbjct: 545 WIKDRVRASGLPKNCLIFEVKEESVQENLTQARAFAAGMEAIGCGFAIDDFG-----LSS 599

Query: 873 -----LGYIPFDTVKFNGSLMTGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIK 925
                L  IP   +KF+  L       +     L  +   A       I + +     + 
Sbjct: 600 NPQKVLNDIPAQFIKFHAELTKDLFNNQDNQNKLTELSNAAHEKGRQTIIQHVEDPTTLS 659

Query: 926 ELTRMGCDYIQDSHVASPLG 945
            +  +G D+IQ   ++ PL 
Sbjct: 660 VIWTIGSDFIQGHFISPPLD 679


>gi|146313041|ref|YP_001178115.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
 gi|145319917|gb|ABP62064.1| diguanylate cyclase with PAS/PAC sensor [Enterobacter sp. 638]
          Length = 327

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 9/300 (3%)

Query: 393 TGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDR-VTTTPDIATILGLASGSMHGPIRN 451
               ++       + S A+ G+G  +W  DI   + +       ++LG     ++     
Sbjct: 17  NARLARLARDARSKLSAALDGTGLCLWQLDIPSGKLIIYNRRWGSMLGYQPKELNAQFDV 76

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRP-MSNSNGDIL 510
           W  ++H +DR          +  +    +   R++  +    W++ R R    + +G+ L
Sbjct: 77  WREHLHPDDRQMVLDAFYDHLNGKTPFYEALHRMQHKNGTISWVLDRGRVSEWDEHGNPL 136

Query: 511 RYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMV 570
           R  G   D+T++K+  E +   A  D LTG+ NR + +     +       D     V  
Sbjct: 137 RVTGTHIDMTKEKQYEEQLALLANHDPLTGLANRHALVKHFAQL------KDQGPLCVAF 190

Query: 571 IDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKI 630
           ID+D +K +ND  G   GD++L+ L++R+GE      I+ RL G+ F ++L    +SL +
Sbjct: 191 IDLDDFKSVNDTFGHRSGDELLIQLSKRLGETCPEGSIVGRLGGDEFVLLLPFTLSSLWV 250

Query: 631 ADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGN 690
              A    ++   P  L   +  V ASIG       +      L+ A+ +MY  KH G N
Sbjct: 251 NSTAHKCLQAALTPFELDNGQARVGASIGIDEVQP-EDDFINALRRADQSMYQIKHTGKN 309


>gi|291539932|emb|CBL13043.1| FOG: EAL domain [Roseburia intestinalis XB6B4]
          Length = 637

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/436 (18%), Positives = 169/436 (38%), Gaps = 15/436 (3%)

Query: 525 SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLG 584
            +     +A+ D+ TG  + Q+FL ++  + + S           V+ I +   I  +LG
Sbjct: 201 YMAMQNPSAYIDSETGTSDEQAFLIQMKNVTEQSGKK-----VFFVVHIRQMHHIEMLLG 255

Query: 585 IAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMP 644
                 +L  +   +   L     + R + + F I+L    +  K       ++K     
Sbjct: 256 YENSRRLLAEVGHYLTA-LCGKFCVFRNAEDTFTILL----DEGKEEHIKGQIKKRFEQD 310

Query: 645 INLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRSDR 704
            ++    I++   +    +     + +E        +  A++ G         +  +   
Sbjct: 311 FHVSGNSISLNEVMITLHYPRDFCSLAEYRALYGYLLEAAQNSGKQVFFEVDEAVKKDYY 370

Query: 705 VM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAE 762
               +++ +  A+  +   + Y PI  L ++ +V LEAL++ +  K G I   EF+ +AE
Sbjct: 371 RRNKVEQAVDRAITENRFEVYYQPIYSLKEKCVVSLEALVRLEDEKLGAIPPDEFIPLAE 430

Query: 763 ELCMIKAINLFMLERIARDIISWRDQANMPPIF-ILINIASKDLLDNELCEGMQALISKT 821
           +   I  I+  +LE   R +           I  I +NIA+   L+  L E +  ++ + 
Sbjct: 431 QNGTIIQISEIVLEECCRFLAKHVLPNPSLGIRTIHVNIAAALCLNRNLKESILPVLERY 490

Query: 822 LYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 I L  +E   +  P+     +    KIG+   +DD+G   S  SYL   PF  +
Sbjct: 491 YVPAHMITLELTERTAVEAPKLMLWHMQEFGKIGMGFAMDDYGNGNSNCSYLIRFPFREI 550

Query: 882 KFNGSLMTG--STEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + ++            ++ + I   + +   +I + +  +     L  +G D IQ  +
Sbjct: 551 KIDKNMTWSYFENPTAKIVIENEIKTIQKLGLPLIMEGVEKKEQSDALEALGVDMIQGYY 610

Query: 940 VASPLGFNSILKLLKE 955
              P+     L+ ++ 
Sbjct: 611 YGKPMPETECLRYIRR 626


>gi|324016743|gb|EGB85962.1| cyclic diguanylate phosphodiesterase domain protein [Escherichia
           coli MS 117-3]
          Length = 518

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+EN ++ + Y PI+ L + +IVG EAL +W       +S   F+ +A++  + +
Sbjct: 275 HRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSE 334

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + L ++     D+  W  Q       I IN+ S  L   ++ + ++ +I+    +P +I
Sbjct: 335 PLTLLIIRSAFEDMGDWLRQHPQQ--HISINLESTVLTSEKIPQLLREMINHYQVNPRQI 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R+ G  + LDDFGT  S LSYL  +  D +K + S +
Sbjct: 393 ALELTEREF-ADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFV 451

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    +  L    
Sbjct: 452 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKED 509

Query: 949 ILKLLKERF 957
            L+  ++  
Sbjct: 510 FLRWAEQHL 518


>gi|160940509|ref|ZP_02087853.1| hypothetical protein CLOBOL_05402 [Clostridium bolteae ATCC BAA-613]
 gi|158436469|gb|EDP14236.1| hypothetical protein CLOBOL_05402 [Clostridium bolteae ATCC BAA-613]
          Length = 1254

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 164/386 (42%), Gaps = 15/386 (3%)

Query: 384  FTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASG 443
            ++VI  +  T +  + +    ER  + +  + DI ++WDI  D V  + +     G    
Sbjct: 624  YSVIIDIDQTKHAQEELRLGLERYKIVMEQTNDIFFEWDIGSDTVVYSINWKAKFGYDPI 683

Query: 444  SMHGPIRNW-LPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM 502
            S    +R   + +++  D   F  +++     RR   + EFRV  +  ++ W  +R    
Sbjct: 684  SEQASVRIPKISHLYPEDMAPFGHLIEEIRDGRRYG-ELEFRVSDSKGRYQWCKLRATTQ 742

Query: 503  SNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDD 562
             +  G   + +GI  DI ++K + + +   A +D LT + N++S   R+  +L     ++
Sbjct: 743  FDDQGQPCKAVGIVIDINDEKLAAQELKARAERDTLTRLYNKESARQRIEHLL--VNREE 800

Query: 563  NLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILI 622
                 + VIDID +K +ND  G   GD VL  +  ++  L +  DI++R+ G+ F  +L 
Sbjct: 801  GEGAALFVIDIDNFKMVNDQYGHMFGDAVLTKIAGQLSRLFRSSDIVSRIGGDEFMALLQ 860

Query: 623  SENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMY 682
               N  ++   A  + +     +  L ++  +T SIG A           + + A++A+Y
Sbjct: 861  GVVNEQRVKSVAGRLIECFERVLEELPKDCCITCSIGIAVCPRDGENFQTLFRRADVALY 920

Query: 683  HAKHRGGNHVESFRVSSF-----------RSDRVMIKEDLCLAVENSELYLVYHPIIRLM 731
             AK  G    + +  S              +    I+ +    +  ++L      I+   
Sbjct: 921  QAKACGKKQYQIYDQSMEDKAFGQGAGRKATVNTTIESEQNGDMMLNDLLPRAFNILSKS 980

Query: 732  DEEIVGLEALIQWDHPKWGNISSSEF 757
            ++    +E++++    +     +  F
Sbjct: 981  EKMDKAVESVLELLGERLQVSRAYVF 1006



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 17/145 (11%)

Query: 395 YFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATI-------LGLASGSMH 446
              Q    D  R         D     +I++  +        T+       LG     + 
Sbjct: 505 RAHQEADLDENRLR------EDRRVLHNILKGILRCRNDRWFTMMDVDDGFLGYTREEIK 558

Query: 447 GPIRN-WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNS 505
               N ++  I  +DR+  R  L   +  R G  + E+RV     +  WM+ + R M ++
Sbjct: 559 ERFNNCYIEMIRPDDRERMRRELTEQI-NRGGEYEVEYRVEDRSGRSIWMLDKGRLMYDN 617

Query: 506 NGDILRYIGIANDITEQKKSLEGIL 530
            G    Y  +  DI + K + E + 
Sbjct: 618 EGREYFY-SVIIDIDQTKHAQEELR 641


>gi|50119008|ref|YP_048175.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609534|emb|CAG72967.1| putative signaling membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 535

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 5/258 (1%)

Query: 698 SSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEF 757
             ++  +++ ++++   + N E  + Y PI         G+E L++W       I    F
Sbjct: 260 WYWQKRKLLFRDEIRKGIANGEFSVYYQPIYDADSRSCTGVETLLRWRRSNGQWIRPDIF 319

Query: 758 MLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQAL 817
           +  AE   MI  I   + + +A DI SW+     P   + +N+A++ L        +   
Sbjct: 320 ISAAEAESMIIPITRHLFDLVASDIASWQ---VKPGFHLGLNVAAEHLHHPSFVPDVHRF 376

Query: 818 ISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIP 877
             K       I L  +E  ++ N       L +LR+ G  + +DDFGT    LSYL   P
Sbjct: 377 AEKVASHSLSITLELTERNLISNGPEIIQRLHQLREDGFMIAIDDFGTGHCSLSYLQNFP 436

Query: 878 FDTVKFNGSLMTGS-TEKRIA-ILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYI 935
            D +K +   ++   +    A IL +II ++  I+   IA+ +  E  +  L R G  YI
Sbjct: 437 LDCLKIDQGFVSAISSPDEEAPILDAIISLSHRIKLQSIAEGVETEQQLMYLQRRGVKYI 496

Query: 936 QDSHVASPLGFNSILKLL 953
           Q    A P+   S+   L
Sbjct: 497 QGFLYAKPMDNESLRVWL 514


>gi|148547549|ref|YP_001267651.1| diguanylate phosphodiesterase [Pseudomonas putida F1]
 gi|148511607|gb|ABQ78467.1| diguanylate phosphodiesterase [Pseudomonas putida F1]
          Length = 528

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 7/264 (2%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                      + +L  A++  E    + P++R  D    G E L++W HP+ G +    
Sbjct: 251 CRWQIRRATSPRAELDRALQADEFLPYFQPVVRKGDYRWAGAEVLMRWHHPREGLVRPDL 310

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE    I A+   +L   A+ +  +          I +NI +    D  L +  + 
Sbjct: 311 FIPYAEHSGQIVAMTRALLTHTAQSLAPY-AGLLEDGFHIGVNITADHCRDLSLLDDCRT 369

Query: 817 LISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +      P R  + L  +E  ++     +  L  +L  +G+ + LDDFGT  S L+YL 
Sbjct: 370 FLQHF--PPGRVVLTLELTERKLIEPTPVTLELFEKLHAMGVMIALDDFGTGQSSLNYLR 427

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +K + S +         + IL SII ++  ++  I+A+ +  ++    L + G 
Sbjct: 428 QFKVDYLKIDQSFVAMIGADALSVHILESIIELSGKLDLGIVAEGVETDLQRDYLAKHGV 487

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D+ Q    A P+     L  L  R
Sbjct: 488 DFQQGYLFARPMPAAQFLAALATR 511


>gi|322833591|ref|YP_004213618.1| diguanylate phosphodiesterase [Rahnella sp. Y9602]
 gi|321168792|gb|ADW74491.1| diguanylate phosphodiesterase [Rahnella sp. Y9602]
          Length = 530

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 116/263 (44%), Gaps = 14/263 (5%)

Query: 705 VMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEEL 764
           + +   +   + + E  +   PII   D   +G+E L++W + +   +S   F+ +AE+ 
Sbjct: 267 ISLAYPISHGISHREFKVYCQPIINSTDGRCIGVETLMRWKNRRQEWVSPDVFIPLAEQH 326

Query: 765 CMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYS 824
            +I A+  ++++ +A ++  +      P  ++ IN+A++   + E+ + ++ L       
Sbjct: 327 GLIIALTRYLIQTVAENLSVFPAT---PGFYVSINVAAQHFNNMEIVDDIRKLW----LP 379

Query: 825 PS---RIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTV 881
                 + L  +E   +     +   + +L+++GI L +DDFGT  S LSYL  +  D +
Sbjct: 380 AQPSVSLMLELTERTRLQELRAAE--ISQLKEMGILLAIDDFGTGHSSLSYLKTLNPDVL 437

Query: 882 KFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSH 939
           K + +             +  +II +A+ +   +IA+ +     +  L     D +Q  +
Sbjct: 438 KIDQAFTASIGTDAINATVTDTIITLAQRLNLKLIAEGVETREQVDYLRERRVDSLQGYY 497

Query: 940 VASPLGFNSILKLLKERFPLVKN 962
            A P+        L+      +N
Sbjct: 498 FARPMPIEVFPIWLERYKKTTQN 520


>gi|291525995|emb|CBK91582.1| FOG: EAL domain [Eubacterium rectale DSM 17629]
          Length = 547

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/547 (14%), Positives = 189/547 (34%), Gaps = 28/547 (5%)

Query: 415 GDIV--WDWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFV 472
            D +     D+  D        A   G  +G            ++  D   ++  +   +
Sbjct: 18  SDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSCVNDVDLPEYKQEIRYRL 77

Query: 473 GYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCN 532
              +    +  R+     + + M       +  +G     + + N+ T            
Sbjct: 78  NGEKPDDIFYVRM-GKHTKEYMMGFYSDIFTGDDGHRYHVLVLRNENT-----------L 125

Query: 533 AFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVL 592
              D  T +  +  F   +   +      +N    ++ ++I    + N + G      + 
Sbjct: 126 PDIDPYTYLYGQSKFERDINGYI-----MENRSVAIIEVEIGHIDEFNILYGSNFNTAIQ 180

Query: 593 VSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREI 652
             L  +  +++        ++  +F  ++  E +      F   +  +I         + 
Sbjct: 181 RELALKFIDMMDGSTATYYMNNCKFVFVV-KEADRALAKAFYQKIADTIKSMYFFKCFKF 239

Query: 653 TVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSSFRS--DRVMIKED 710
                            +S ++   E  +  AK      +  F      +    + I + 
Sbjct: 240 EFDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSPDLLFFNDMVRFNGSSHIDIMKI 299

Query: 711 LCLAVEN--SELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
           +  +V N     ++ + PI++  + EI+G EAL++W    +G +    F+   E+   + 
Sbjct: 300 IHQSVINSCDGFFVEFQPIVKACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMY 359

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            +  +++         +      P  FI +N +S+ L      +   A++ +  + PS++
Sbjct: 360 ELGNYIMRTAISSASEF--AKIKPGFFINVNASSEQLEKENFVKDTLAILKEYDFPPSQL 417

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            +  +E          +  +   R+ GI +T+DD+GT  S    +  +P + +K +   +
Sbjct: 418 WIEITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFV 477

Query: 889 TGS--TEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGF 946
                 +K+ A++  +I  A   +  I  + I  +     L +      Q  H + P+  
Sbjct: 478 KDILEEKKKQALVIGMINFANAADLRICIEGIENDSLESYLRQFDVTCFQGYHYSRPICQ 537

Query: 947 NSILKLL 953
           + ++KLL
Sbjct: 538 DELMKLL 544


>gi|254502444|ref|ZP_05114595.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222438515|gb|EEE45194.1| cyclic diguanylate phosphodiesterase domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 640

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 186/468 (39%), Gaps = 48/468 (10%)

Query: 521 EQKK---SLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDI---- 573
           E+K+   +L         D  TG+  ++  ++++  +   S   D+    V+ +D+    
Sbjct: 192 ERKRDGFNLARATAEMRHDPATGLMTQKVLIEKIEEM--QSKRRDDQDLVVLYLDLVMPW 249

Query: 574 ---------DKYKKINDVLGIAVGDDVLVSLTRRIGELLK---FPDILARLSGNRFGIIL 621
                    D              + +L ++  RI   +        L R S + F + +
Sbjct: 250 TGSGSASETDH-------------NAILAAIAERIQHQINLGTETACLGRASSSGFFVAM 296

Query: 622 -ISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
            + + +     +    +R  I  P+ +      V +  G A     +      L+NA LA
Sbjct: 297 KMDQESETTALEVTNRLRDHIHRPVAIRSGIYPVNSIAGIAYIDQEERDPGAGLQNALLA 356

Query: 681 MYHAKHRGGNHVESFRVSSFRSDRVM--IKEDLCLAVENSELYLVYHPIIRLMDEEIVGL 738
           +      G  HV +++            I   L  A+E  +    + P   +   +IVG+
Sbjct: 357 VSEEIRTGRRHVGTYKPPMRAVAERQSGISRALLQALEQEDCLPHFQPQFNIKTGQIVGI 416

Query: 739 EALIQWDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILI 798
           EAL +W HP  G I+ +E + IAE+  +I  +   ++E     +     Q     + + +
Sbjct: 417 EALARWYHPHLGWIAPAEVIPIAEQNGLIIPLERKIIETACAQV-----QLLPGDVDLAV 471

Query: 799 NIASKDLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISL 858
           N++   +L  ++   ++  ++ T  S  R+K+  +   ++   +R    L  LR +G++L
Sbjct: 472 NLSVPHMLHGDVAPMIEDCLNSTGLSAERLKVEVAAGRLLNTFDRVHGCLEDLRALGVTL 531

Query: 859 TLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAILRSIIPMA----KNIETTII 914
           +LD+FGT  S LS +    +D VK + SL     +        +I MA    K +E+T +
Sbjct: 532 SLDNFGTPASALSGILQYKWDEVKIDTSLTKILRDGDAG--HGLIAMALTMVKTLESTAL 589

Query: 915 AKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNSILKLLKERFPLVKN 962
            + I        LT +GC+  Q      P+  + +  L     P +  
Sbjct: 590 IEGIETIEQRDMLTALGCELGQGYLFGGPMAIDDLNALFFSDQPNLAR 637


>gi|327394120|dbj|BAK11542.1| diguanylate cyclase/phosphodiesterase YoaD [Pantoea ananatis
           AJ13355]
          Length = 520

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 116/266 (43%), Gaps = 10/266 (3%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           + V    ++R+ +   +   +   E  +   P+I     E  G+E L++W +P+ G I  
Sbjct: 257 YVVWLATANRMSLSWQISYGITAREFMVYCQPLINARTSECEGIELLLRWHNPRQGWIPP 316

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ + E   +IK +  F+L R+   +    D  + P   I IN+A+    D  + E +
Sbjct: 317 DVFIPLVERQNLIKPLTRFVLNRVVEAL---PDLPHSPHFHIAINVAASHFRDRAILEDL 373

Query: 815 QALIS-KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           Q L           + +  +E   +   +++  ++ +L  IG+ L +DDFGT  S LSYL
Sbjct: 374 QTLWWPAEPVPT--LVVELTERDALPVVDQA--VISQLHDIGVRLAIDDFGTGHSSLSYL 429

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +               +   +I +A+ +  +++A+ +  E     L   G
Sbjct: 430 KDLQPDVLKLDKIFTASIGTDAINAIVTDMVISLAQRLNISLVAEGVETEEQAHYLRDRG 489

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
            +++Q  + A P+      + L++  
Sbjct: 490 VEHLQGYYFARPMPLEDFPEWLRQHQ 515


>gi|262395365|ref|YP_003287218.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio sp. Ex25]
 gi|262338959|gb|ACY52753.1| diguanylate cyclase/phosphodiesterase domain 2 [Vibrio sp. Ex25]
          Length = 320

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 130/301 (43%), Gaps = 6/301 (1%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTT-TPDIATILGLASGSMHGPIR 450
                 +      E+ + A+  +G  +W+  I    +T        +LG     +   + 
Sbjct: 17  ENEELKRKNARLQEKLNAALDSNGLCLWEQHIPSGTLTIFNMQWGKMLGYQPHELTATVE 76

Query: 451 NWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPM-SNSNGDI 509
            W   +H  D D      +  +  +    +   R+   D    W+  R R +   S+G+ 
Sbjct: 77  TWKNNLHPEDYDLAVGAFEDHLAGKTDLYEVVHRMIHKDGSDSWVYDRGRVVEYGSDGEP 136

Query: 510 LRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVM 569
           LR +G   DIT++K+  + +   A  D LTG+ NR++  +          T  + +  ++
Sbjct: 137 LRMMGTHIDITKEKRYEQQLAKLASSDPLTGLLNRKAIEENFNH---QPQTKPSQQSALV 193

Query: 570 VIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLK 629
            +DID +K +ND LG   GD +L+++   + EL      + R+ G+ F  +L S +N  +
Sbjct: 194 FVDIDNFKAVNDQLGHHTGDTLLINIANSLTELAPSKSQVGRIGGDEFV-VLSSYSNQEE 252

Query: 630 IADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKHRGG 689
           I+     +  SI   IN    ++T+  SIG   +   K   +E+ + A+ AMY  K  G 
Sbjct: 253 ISQLCDRLLSSIIPAINQDLNKVTIGMSIGVCLFDKGKQQFNEVYQKADHAMYEIKKNGK 312

Query: 690 N 690
           N
Sbjct: 313 N 313


>gi|238789297|ref|ZP_04633084.1| hypothetical protein yfred0001_41060 [Yersinia frederiksenii ATCC
           33641]
 gi|238722629|gb|EEQ14282.1| hypothetical protein yfred0001_41060 [Yersinia frederiksenii ATCC
           33641]
          Length = 484

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 3/245 (1%)

Query: 711 LCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIKAI 770
           L  A+EN+E      PI+   D+  VG E L++W HP  G I  ++F+ +AE+  +I  +
Sbjct: 239 LRHALENNEFIPYMQPIVSGKDQCWVGCEVLMRWQHPGHGLIQPNKFIPMAEDSELIVPM 298

Query: 771 NLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRIKL 830
              ++ ++      + +Q          NI++    D  L +  ++ I     +   I L
Sbjct: 299 TCSIMRQVREKFAPYVNQLP-EGFHFGFNISANHCRDLSLVDDCRSFIEAFGGNKINITL 357

Query: 831 SFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLMTG 890
             +E  ++   E +  L   L  +G+ + +DDFGT  S L+YL     D +K + S +  
Sbjct: 358 ELTERQLIVADETTDRLFAELNALGVFIAIDDFGTGHSSLTYLQKFKVDFIKIDQSFVGM 417

Query: 891 STEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                    I+ ++I +A  +    IA+ +  +  ++ L     DY+Q      P+    
Sbjct: 418 IGSDALSSHIVGNVIDLATRLGLQTIAEGVENDTQMRYLQAHKVDYLQGYMYGRPMPMAE 477

Query: 949 ILKLL 953
             K +
Sbjct: 478 FAKYM 482


>gi|291617696|ref|YP_003520438.1| YoaD [Pantoea ananatis LMG 20103]
 gi|291152726|gb|ADD77310.1| YoaD [Pantoea ananatis LMG 20103]
          Length = 521

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 116/266 (43%), Gaps = 10/266 (3%)

Query: 695 FRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISS 754
           + V    ++R+ +   +   +   E  +   P+I     E  G+E L++W +P+ G I  
Sbjct: 258 YVVWLATANRMSLSWQISYGITAREFMVYCQPLINARTSECEGIELLLRWHNPRQGWIPP 317

Query: 755 SEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGM 814
             F+ + E   +IK +  F+L R+   +    D  + P   I IN+A+    D  + E +
Sbjct: 318 DVFIPLVERQNLIKPLTRFVLNRVVEAL---PDLPHSPHFHIAINVAASHFRDRAILEDL 374

Query: 815 QALIS-KTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYL 873
           Q L           + +  +E   +   +++  ++ +L  IG+ L +DDFGT  S LSYL
Sbjct: 375 QTLWWPAEPVPT--LVVELTERDALPVVDQA--VISQLHDIGVRLAIDDFGTGHSSLSYL 430

Query: 874 GYIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMG 931
             +  D +K +               +   +I +A+ +  +++A+ +  E     L   G
Sbjct: 431 KDLQPDVLKLDKIFTASIGTDAINAIVTDMVISLAQRLNISLVAEGVETEEQAHYLRDRG 490

Query: 932 CDYIQDSHVASPLGFNSILKLLKERF 957
            +++Q  + A P+      + L++  
Sbjct: 491 VEHLQGYYFARPMPLEDFPEWLRQHQ 516


>gi|288940901|ref|YP_003443141.1| PAS/PAC sensor-containing diguanylate cyclase [Allochromatium
           vinosum DSM 180]
 gi|288896273|gb|ADC62109.1| diguanylate cyclase with PAS/PAC sensor [Allochromatium vinosum DSM
           180]
          Length = 502

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 135/314 (42%), Gaps = 9/314 (2%)

Query: 385 TVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGS 444
            ++  + A     Q +    ER       +    W+W+   D V   PD           
Sbjct: 187 VILVDITARKRVEQALRDSQERLRRVTEIADVSCWEWEPRTDHVLFPPDWH----WPPRE 242

Query: 445 MHG----PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIR 500
                   + +W  ++HI DR      L  FV +     + ++R+R  D  + W + R+ 
Sbjct: 243 AQDIRPTCLVDWSDWLHIEDRVRILARLAEFVAHPTDACEIQYRLRRGDGHYDWFLTRLM 302

Query: 501 PMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSAT 560
           P+ ++ G + R + +  D+T +K+S E  +  A  D LTG+P R + LD+L   +     
Sbjct: 303 PIRDTQGTLERVLLVDQDVTRRKESEEQAIRLAQHDPLTGLPTR-ALLDQLAQHMLAGTR 361

Query: 561 DDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGII 620
                  V+  D+D +K +ND  G AVGD +L ++ +R+    +  D++ARL G+ F ++
Sbjct: 362 RAGTLLAVLFFDLDGFKSVNDQYGHAVGDQLLRAVAQRLRTAFRAEDLVARLGGDEFVVV 421

Query: 621 LISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELA 680
           L +  +  +    A      +     L   E+   +S+G + +     +   +L+ A+LA
Sbjct: 422 LANVRDIEQARRMARHAIDILTPAYRLDGLELECVSSLGVSLFPRDGDSIQTLLQQADLA 481

Query: 681 MYHAKHRGGNHVES 694
           +Y AK         
Sbjct: 482 LYQAKRSNPGGYWF 495



 Score = 48.8 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 10/148 (6%)

Query: 392 ATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLASGSMHGPIRN 451
                   +     R       +                    AT+LG+    +    + 
Sbjct: 66  ELHRTQDELELLHARYFDLYELAPAGYLTLSETGVIQEANLAAATLLGVERRLL--TQQR 123

Query: 452 WLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQF-HWMIIRIRPMSNSNGDIL 510
              +IH +D+D            R+ +  YE R+R    +   W+ + +  +  S     
Sbjct: 124 LTRFIHPDDQDTHYQAQRRLRSTRKPQ-SYELRLRREQPRPACWVSLEVCLVPESQPPPA 182

Query: 511 R-YIGIANDITEQKKSLEGILCNAFQDN 537
                I  DIT +K+        A +D+
Sbjct: 183 GSCRVILVDITARKRVE-----QALRDS 205


>gi|121609900|ref|YP_997707.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
 gi|121554540|gb|ABM58689.1| diguanylate cyclase [Verminephrobacter eiseniae EF01-2]
          Length = 612

 Score =  250 bits (639), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 106/700 (15%), Positives = 212/700 (30%), Gaps = 96/700 (13%)

Query: 7   LRSHFEKAFLILVLFLLWMVSPSFAIEPINISSSDRVLDLTSITRIYVNQGEDFQVFTAA 66
           +   +    L+L     +  S + A   + +       DL ++  +  +     ++    
Sbjct: 1   MGKRWWWVALVL-ALCPFWTSQAGAGL-VRLVPGQGSYDLGAMADVLEDVPGRLRLDDVL 58

Query: 67  D-----IDGISRRIEVSASSIRHRGDWAVFALANTSDSQLERLIVVPHYRLVGSHFFSPD 121
                     S    +S+        W    + N + +  + L+V+    L    +F PD
Sbjct: 59  AGGSAASAFSSHTGRLSSFGFTRSTFWFRVEIDNPAPAPSDMLLVLRTPWLDSVRWFRPD 118

Query: 122 LGSRRIISVTPSEGFSLDRIPNSDSDVFRITINPGAVVTFIMEISTPNLP--QIYLWEPN 179
                +  +         R   +   +  + + PG   ++ + +++       I LW   
Sbjct: 119 GQGGYVERLLGDHLPFKARSYATPQFLIDVPVLPG-KHSYYLRLASAGAFMTPIELWSRQ 177

Query: 180 FYKDTVNSFTLYRGIIIGVASLLAIFLTIFYMVNRSSMLIPTFAMAWVVLGYISIDFGFL 239
            + D    +  Y G+  G+  ++ ++    +   R            V         GF 
Sbjct: 178 AFHDNDRLWAAYYGMFYGILCIMVLYNGCIWASTRDRSYFVYCLYLAVFFLMNFSYNGFA 237

Query: 240 SKLVNLPSGELLIWRACSEIALSSSLIIFLFMYLHWNRWHAKVGYITFSGIACIAILFCM 299
            +                                   RW              +A+LF M
Sbjct: 238 FQYFWP----------------------------ESPRWSNWSQTHWIFAFQGLAVLFTM 269

Query: 300 SFYYPMVTASIARITLASIVLYYTYFIIYHGMKGYERAVLLIPAWILIFIWFIGLWMAIT 359
           +F             L + ++      I   + G   A   +P  I        L +   
Sbjct: 270 NFLESKTRLPRMHRVLQAFLVVLVGSWIAVTVSGDIVAYHAVP--IYFIFGCAPLIL--- 324

Query: 360 KRLDNDIIQPALVGGLVLIVILIGFTVIQHVLATGYFSQGIFSDGERQSLAVLGSGDIVW 419
                  +            +L     I     T     G+       + A   +     
Sbjct: 325 ---AAGFLALRPGYRAARFFVLAFVASITGSFFTALTVSGLIP----YTFANFHAS---- 373

Query: 420 DWDIVRDRVTTTPDIATILGLASGSMHGPIRNWLPYIHINDRDNFRTILDSFVGYRRGRL 479
           ++ ++ D V  +  +A                        DR    +        R    
Sbjct: 374 EFGLLADMVLLSQALA------------------------DRVKLLSEQRDAAELR---- 405

Query: 480 QYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGIANDITEQKKSLEGILCNAFQDNLT 539
           + E ++                +  +N D+ R +      +E  ++ +     A  D LT
Sbjct: 406 EIEQKI-----------ATTALLKQANEDLERMV--LERTSELARARDEAEHFARIDMLT 452

Query: 540 GIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDKYKKINDVLGIAVGDDVLVSLTRRI 599
           G+ NR+ F +  T     +        +V++IDID +K++ND  G A GD V+ ++ R  
Sbjct: 453 GVANRRYFEEVATMEFARTQRGQQA-LSVILIDIDLFKQVNDRYGHAAGDAVIRAVARLA 511

Query: 600 GELLKFPDILARLSGNRFGIILISENNSLKIADFAIAMRKSIAMPINLLEREITVTASIG 659
            E ++  D +AR+ G  F ++L     +   A       +  A  +      +  TAS G
Sbjct: 512 KESVRESDFVARIGGEEFSVLLPGIGQAPAFATAERLRERIAACVVEHDGHSLGFTASFG 571

Query: 660 FASWTSSKITSSEMLKNAELAMYHAKHRGGNHVESFRVSS 699
            +   +     S +L+ A+ A+Y AK  G N V    +  
Sbjct: 572 VSEQVADDPGFSSLLRRADQALYAAKQAGRNQVVVQALEW 611


>gi|26990148|ref|NP_745573.1| diguanylate phosphodiesterase [Pseudomonas putida KT2440]
 gi|24985084|gb|AAN69037.1|AE016536_5 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 528

 Score =  250 bits (639), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 7/264 (2%)

Query: 697 VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSE 756
                      + +L  A++  E    + P++R  D    G E L++W HP+ G +    
Sbjct: 251 CRWQIRRATSPRAELDRALQADEFLPYFQPVVRKGDYRWAGAEVLMRWHHPREGLVRPDL 310

Query: 757 FMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQA 816
           F+  AE    I A+   +L   A+ +  +          I +NI +    D  L +  + 
Sbjct: 311 FIPYAEHSGQIVAMTRALLTHTAQSLAPY-AGLLEDGFHIGVNITADHCRDLSLLDDCRT 369

Query: 817 LISKTLYSPSR--IKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLG 874
            +      P R  + L  +E  ++     +  L  +L  +G+ + LDDFGT  S L+YL 
Sbjct: 370 FLQHF--PPGRVVLTLELTERKLIEPTPVTLELFEKLHAMGVMIALDDFGTGQSSLNYLR 427

Query: 875 YIPFDTVKFNGSLMTGSTEK--RIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGC 932
               D +K + S +         + IL +II ++  ++  I+A+ +  ++    L   G 
Sbjct: 428 QFKVDYLKIDQSFVAMIGADALSVHILETIIELSGKLDLGIVAEGVETDLQRDYLAAHGV 487

Query: 933 DYIQDSHVASPLGFNSILKLLKER 956
           D+ Q    A P+     L+ L  R
Sbjct: 488 DFQQGYLFARPMPAAQFLEALATR 511


>gi|331672002|ref|ZP_08372798.1| putative diguanylate phosphodiesterase [Escherichia coli TA280]
 gi|331070991|gb|EGI42350.1| putative diguanylate phosphodiesterase [Escherichia coli TA280]
          Length = 518

 Score =  250 bits (639), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 5/249 (2%)

Query: 709 EDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNISSSEFMLIAEELCMIK 768
             L  A+EN ++ + Y PI+ L + +IVG EAL +W       +S   F+ +A++  + +
Sbjct: 275 HRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSE 334

Query: 769 AINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCEGMQALISKTLYSPSRI 828
            + L ++  +  D+  W  Q       I IN+ S  L   ++ + ++ +I+    +P +I
Sbjct: 335 PLTLLIIRSVFEDMGDWLRQHPQQ--HISINLESTVLTSEKIPQLLREMINHYQVNPRQI 392

Query: 829 KLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSYLGYIPFDTVKFNGSLM 888
            L  +E     +P+ S  ++ R R+ G  + LDDFGT  S LSYL  +  D +K + S +
Sbjct: 393 ALELTEREF-ADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFV 451

Query: 889 TGSTEKRIAILRSIIPMAKNIETTIIAKDIYGEIDIKELTRMGCDYIQDSHVASPLGFNS 948
                K   +   II MAK ++  ++A+ I      + L + G  Y Q    +  L    
Sbjct: 452 DALEYKN--VTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKED 509

Query: 949 ILKLLKERF 957
            L+  ++  
Sbjct: 510 FLRWAEQHL 518


>gi|194365398|ref|YP_002028008.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Stenotrophomonas
           maltophilia R551-3]
 gi|194348202|gb|ACF51325.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Stenotrophomonas maltophilia R551-3]
          Length = 689

 Score =  250 bits (639), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 89/563 (15%), Positives = 200/563 (35%), Gaps = 16/563 (2%)

Query: 389 HVLATGYFSQGIFSDGERQSLAVLGSGDIVWDWDIVRDRVTTTPDIATILGLAS-GSMHG 447
                    +    + ER+  A++ S      +      +        + G      + G
Sbjct: 128 QARRGLRRIEAQMRETERRCDALIASSRDPIAYVHEGMHIRANDAYLEMFGYEHFDDIEG 187

Query: 448 PIRNWLPYIHINDRDNFRTILDSFVGYRRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNG 507
              + L  +     + F+ +L           QY+   R  D       +     +   G
Sbjct: 188 --ISLLDMVAAQHVEGFKQLLKGLSRGEAPPPQYQLDARHEDGSAFPATMEFTA-ATYEG 244

Query: 508 DILRYIGIANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPT 567
           +    + +   +    +    +     +D +TG+ NR +F+ +L + +  +   +  +  
Sbjct: 245 ESCLQVVLRRRMEFDPELAREVEDLRQRDQVTGLLNRPTFMLQLESAVAQAGRSEG-QFG 303

Query: 568 VMVIDIDKYKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNS 627
           +++I+ D Y ++   +G+A  D ++ +L   + E++     LAR   + F ++       
Sbjct: 304 LLLIEPDHYARLLPDIGLASADTLIGALAGLLAEVVGEDAQLARFGEHNFAVLQAGP--Y 361

Query: 628 LKIADFAIAMRKS-IAMPINLLEREITVTASIGFASWTSSKITSSEMLKNAELAMYHAKH 686
            +    A  +R++  A   ++  R  TVT SIG         +  ++L  A    + A  
Sbjct: 362 AQTVALAERIREAYAAHVFSIGARSATVTVSIGGVQVGEKIASIGQVLARASECTHAAAE 421

Query: 687 RGGNHVESFR---VSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQ 743
            G                   +     +  A+      L Y P++ L  E +   EA ++
Sbjct: 422 LGNTCRIFDPAAADRVEEERVLRWVARIREALAGDGFQLHYQPVLNLQGESLELYEAYLR 481

Query: 744 WDHPKWGNISSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASK 803
            +H     +S + F+ IAEE  ++  IN +++ +    +     + +   + + +    +
Sbjct: 482 LEH-NGELLSPTAFLGIAEEHGLLADINRWVVSQAIAVLGQRAREGHATQMLVKV--TPE 538

Query: 804 DLLDNELCEGMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDF 863
              D ++   ++  +        R+ L   E+ V  +   ++  L  +  +G  + L+ F
Sbjct: 539 SFDDPQMIATLRRELQAQGVPGERLWLHAPEAKVFTHLRSAQQFLAEVAPLGCRIGLEQF 598

Query: 864 GTKCSLLSYLGYIPFDTVKFNGSLMTGSTEKRIAI--LRSIIPMAKNIETTIIAKDIYGE 921
           G+       L +     +K +    +     R  I  +  I   A+      IA+ +   
Sbjct: 599 GSGLDSFQLLAHFQPQFLKLDRGFTSDLAATRENIDRISQITARAQEAGIRTIAEFVSDA 658

Query: 922 IDIKELTRMGCDYIQDSHVASPL 944
             +  L   G DY+Q   V   L
Sbjct: 659 NSMTLLFSAGVDYVQGDFVGPAL 681


>gi|16125338|ref|NP_419902.1| sensory box protein [Caulobacter crescentus CB15]
 gi|221234077|ref|YP_002516513.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000]
 gi|13422390|gb|AAK23070.1| sensory box protein [Caulobacter crescentus CB15]
 gi|220963249|gb|ACL94605.1| sensory box/GGDEF family protein [Caulobacter crescentus NA1000]
          Length = 547

 Score =  250 bits (639), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 86/553 (15%), Positives = 206/553 (37%), Gaps = 52/553 (9%)

Query: 399 GIFSDGERQSLAVL-GSGDIVWDWDIVRDRVTTT-PDIATILGLASGSMHGPIRNWLPYI 456
            + S   R+ L +   S D++ +  +   RV         ++G +  ++ G    W    
Sbjct: 11  AVLSLDPRRLLGLAFASADLLVE--LQNGRVRLALGAAQKVMGASEAALAGK--AWAELF 66

Query: 457 HINDRDNFRTILDSFVGY-RRGRLQYEFRVRAADNQFHWMIIRIRPMSNSNGDILRYIGI 515
           H +DR     +L       RRG +     +R A+     + + +R +  + G I   +  
Sbjct: 67  HADDRALMEAMLSCADDGVRRGPVV----LRLAEPADKHIRVVLRALPENQGRISAAV-- 120

Query: 516 ANDITEQKKSLEGILCNAFQDNLTGIPNRQSFLDRLTTILDLSATDDNLRPTVMVIDIDK 575
               T  + +   +  ++       +  R+SF D +   L  +A    +   + +++   
Sbjct: 121 ----TAAQPAGPPLSASS-------LQPRESFDD-IAQGLFEAARVTGIELELAMVEFAG 168

Query: 576 YKKINDVLGIAVGDDVLVSLTRRIGELLKFPDILARLSGNRFGIILISENNSLKIADFAI 635
              + + L       + V +   +           +LS +RF ++   ++    +     
Sbjct: 169 LGDMREALSPDEAVALDVRVASALRAEAHGGAAATKLSDDRFALLRQRDDRPENMIKRLT 228

Query: 636 AMRKSIAMPINLLEREITVTASIGFASWTSSKITSSEM--LKNA-ELAMYHAKHRGGNHV 692
            M              ++  AS       +   +S  +  L+ A +  +           
Sbjct: 229 KM--------------VSAEASAHVVPLENGGGSSRALRALRYALDDFLREGLKETPPMT 274

Query: 693 ESFRVSSFRSDRVMIKEDLCLAVENSELYLVYHPIIRLMDEEIVGLEALIQWDHPKWGNI 752
            S  ++      +     L +AV      L + P++ L        E L++++       
Sbjct: 275 LSEAMNRSVKRTLARAGALGVAVSQRRFNLAFQPVVSLSTGLAHHHEVLVRFEDGG---- 330

Query: 753 SSSEFMLIAEELCMIKAINLFMLERIARDIISWRDQANMPPIFILINIASKDLLDNELCE 812
           S    + +AEE  +I+ ++  ++E+  + + +     +   + + +N++ + + +    E
Sbjct: 331 SPFALIRMAEEFDLIEELDHAIVEQAVKKLAN----DSERKLKLAVNVSGQTIGNETFVE 386

Query: 813 GMQALISKTLYSPSRIKLSFSESVVMGNPERSRLLLGRLRKIGISLTLDDFGTKCSLLSY 872
            +  L++K   +  R+    +E+  + N   +   +  LR +G  + LDDFG   S  SY
Sbjct: 387 HVGRLLAKFNEAKGRLIFEITETRAIDNLATANQHIQSLRSMGSLVCLDDFGAGSSSFSY 446

Query: 873 LGYIPFDTVKFNGSLMTGSTEKRI--AILRSIIPMAKNIETTIIAKDIYGEIDIKELTRM 930
           L  +  D VK +G  +    +     A++R ++ + ++++   +A+ +        +  +
Sbjct: 447 LQQLALDIVKIDGRYVRELADNSRDGALVRRLVELCRDLKVRTVAEMVETSEVEDVIRSV 506

Query: 931 GCDYIQDSHVASP 943
           G D+ Q      P
Sbjct: 507 GVDFAQGWLYGKP 519


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.145    0.399 

Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,034,520,689
Number of Sequences: 14124377
Number of extensions: 459587006
Number of successful extensions: 2450889
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 40686
Number of HSP's successfully gapped in prelim test: 30753
Number of HSP's that attempted gapping in prelim test: 2228405
Number of HSP's gapped (non-prelim): 122477
length of query: 963
length of database: 4,842,793,630
effective HSP length: 149
effective length of query: 814
effective length of database: 2,738,261,457
effective search space: 2228944825998
effective search space used: 2228944825998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 87 (38.0 bits)